5317 174 22 8 chr11 31 255 -148783217 - MER4-int LTR ERV1 -1716 5821 5602 242 56 28 0 chr11 255 291 -148783181 + (TA)n Simple_repeat Simple_repeat 1 37 0 5317 174 22 8 chr11 291 1126 -148782346 - MER4-int LTR ERV1 -1935 5602 4747 878 93 34 118 chr11 1128 1259 -148782213 - LTR8 LTR ERV1 -504 187 77 2031 118 10 10 chr11 1259 1556 -148781916 + AluSq SINE Alu 1 297 -16 878 93 34 118 chr11 1556 1628 -148781844 - LTR8 LTR ERV1 -614 77 1 364 210 34 125 chr11 1644 1885 -148781587 - MER4-int LTR ERV1 -3658 1982 1091 278 233 50 53 chr11 1895 2100 -148781372 - MER34C LTR ERV1 -172 413 154 2238 95 0 0 chr11 2180 2476 -148780996 + AluY SINE Alu 1 296 -15 353 191 12 12 chr11 2687 2771 -148780701 - MER4-int LTR ERV1 -6697 840 757 1304 152 56 106 chr11 2790 2876 -148780596 - AluJo SINE Alu -6 306 217 4277 71 5 23 chr11 2876 3440 -148780032 - MER41A LTR ERV1 0 554 1 1304 152 56 106 chr11 3440 3675 -148779797 - AluJo SINE Alu -95 217 1 3458 204 10 31 chr11 3675 4458 -148779014 - MER4-int LTR ERV1 -6770 767 1 1966 99 4 4 chr11 4476 4748 -148778724 + AluSx SINE Alu 1 272 -40 669 225 3 0 chr11 4863 5153 -148778319 + (TCCA)n Simple_repeat Simple_repeat 1 291 0 735 238 4 0 chr11 5182 5886 -148777586 + (TCCA)n Simple_repeat Simple_repeat 1 707 0 287 289 20 130 chr11 7217 7463 -148776009 - L3 LINE CR1 -437 1140 922 189 0 0 0 chr11 14182 14203 -148769269 + (CAGA)n Simple_repeat Simple_repeat 1 21 0 293 275 0 14 chr11 15166 15235 -148768237 + MIR3 SINE MIR 104 171 -37 2298 86 3 3 chr11 19161 19464 -148764008 - AluSp SINE Alu -10 303 1 187 270 25 82 chr11 22918 23077 -148760395 - L2 LINE L2 -190 3082 2933 189 147 0 52 chr11 24421 24537 -148758935 + (CCTG)n Simple_repeat Simple_repeat 2 111 0 299 204 0 56 chr11 24547 24709 -148758763 + CT-rich Low_complexity Low_complexity 2 154 0 576 174 31 6 chr11 24866 25027 -148758445 + CT-rich Low_complexity Low_complexity 2 166 0 211 204 0 0 chr11 25419 25463 -148758009 + CT-rich Low_complexity Low_complexity 2 45 0 235 291 63 13 chr11 28243 28322 -148755150 + MIR SINE MIR 108 190 -72 196 305 52 31 chr11 28439 28572 -148754900 - MIR SINE MIR -52 156 51 269 356 6 23 chr11 29025 29199 -148754273 + CT-rich Low_complexity Low_complexity 1 171 0 204 97 0 0 chr11 31152 31183 -148752289 + (TG)n Simple_repeat Simple_repeat 1 31 0 188 163 0 20 chr11 33880 33929 -148749543 + CT-rich Low_complexity Low_complexity 3 50 0 300 111 0 0 chr11 34026 34071 -148749401 + (TCCC)n Simple_repeat Simple_repeat 2 46 0 209 284 21 11 chr11 34326 34421 -148749051 + CT-rich Low_complexity Low_complexity 2 97 0 315 191 0 0 chr11 34421 34484 -148748988 + C-rich Low_complexity Low_complexity 1 63 0 220 323 32 0 chr11 35000 35093 -148748379 - MIR SINE MIR -74 134 39 276 217 300 17 chr11 36065 36185 -148747287 + L3 LINE CR1 1349 1502 -75 587 200 0 7 chr11 36306 36446 -148747026 + (TCCA)n Simple_repeat Simple_repeat 4 142 0 237 224 0 0 chr11 36582 36631 -148746841 + Alu SINE Alu 237 285 -17 227 217 0 0 chr11 36639 36685 -148746787 + Alu SINE Alu 237 282 -20 227 217 0 0 chr11 36704 36750 -148746722 + Alu SINE Alu 237 282 -20 263 184 0 0 chr11 36765 36814 -148746658 + Alu SINE Alu 237 285 -17 227 217 0 0 chr11 36879 36925 -148746547 + Alu SINE Alu 237 282 -20 227 217 0 0 chr11 36940 36986 -148746486 + Alu SINE Alu 237 282 -20 195 69 0 0 chr11 36993 37022 -148746450 + (CA)n Simple_repeat Simple_repeat 1 29 0 231 61 0 0 chr11 37052 37085 -148746387 + (CA)n Simple_repeat Simple_repeat 1 33 0 210 91 0 0 chr11 37119 37152 -148746320 + (CA)n Simple_repeat Simple_repeat 1 33 0 231 61 0 0 chr11 37182 37215 -148746257 + (CA)n Simple_repeat Simple_repeat 1 33 0 252 204 0 0 chr11 37253 37302 -148746170 + AluJ/monomer SINE Alu 237 285 -17 249 57 0 0 chr11 37384 37419 -148746053 + (CA)n Simple_repeat Simple_repeat 1 35 0 253 83 0 0 chr11 37419 37455 -148746017 + Alu SINE Alu 250 285 -17 339 111 25 12 chr11 37501 37582 -148745890 + (CA)n Simple_repeat Simple_repeat 2 83 0 235 132 0 0 chr11 37595 37633 -148745839 + Alu SINE Alu 247 284 -18 204 40 0 0 chr11 37633 37658 -148745814 + (CA)n Simple_repeat Simple_repeat 2 26 0 258 32 0 0 chr11 37688 37719 -148745753 + (CA)n Simple_repeat Simple_repeat 2 32 0 270 0 0 0 chr11 37801 37831 -148745641 + (CA)n Simple_repeat Simple_repeat 1 30 0 1907 162 10 36 chr11 38177 38528 -148744944 - MLT1B LTR MaLR -5 385 43 2175 86 17 0 chr11 38528 38818 -148744654 - AluSx SINE Alu -17 295 1 1907 162 10 36 chr11 38818 38854 -148744618 - MLT1B LTR MaLR -347 43 8 999 135 6 6 chr11 38922 39078 -148744394 - AluJb SINE Alu -156 156 1 341 318 26 0 chr11 39703 39854 -148743618 + (TCTA)n Simple_repeat Simple_repeat 4 158 0 265 229 8 8 chr11 39856 39978 -148743494 + (TCCA)n Simple_repeat Simple_repeat 3 124 0 377 328 8 0 chr11 40140 40262 -148743210 + (TCCA)n Simple_repeat Simple_repeat 4 126 0 731 162 12 12 chr11 40315 40488 -148742984 + (TCCA)n Simple_repeat Simple_repeat 4 176 0 266 319 45 70 chr11 42552 42675 -148740797 + MIR SINE MIR 89 209 -53 2090 117 0 3 chr11 42675 42973 -148740499 + AluSx SINE Alu 1 297 -15 266 319 45 70 chr11 42973 43006 -148740466 + MIR SINE MIR 209 241 -21 195 250 54 18 chr11 43020 43076 -148740396 - MIR SINE MIR -58 150 93 322 172 17 103 chr11 49297 49372 -148734100 - MER45A DNA AcHobo -1405 176 113 2296 100 0 0 chr11 49372 49681 -148733791 + AluSx SINE Alu 1 309 -3 322 172 17 103 chr11 49681 49721 -148733751 - MER45A DNA AcHobo -1468 113 71 833 228 103 70 chr11 49864 50052 -148733420 + MLT1C LTR MaLR 9 189 -278 2294 88 0 25 chr11 50052 50369 -148733103 + AluY SINE Alu 1 309 -2 833 228 103 70 chr11 50369 50539 -148732933 + MLT1C LTR MaLR 189 379 -88 234 0 0 0 chr11 51152 51178 -148732294 + (TG)n Simple_repeat Simple_repeat 1 26 0 1720 165 0 14 chr11 51190 51475 -148731997 - AluJb SINE Alu -29 283 3 816 157 8 15 chr11 52554 52688 -148730784 - FLAM_C SINE Alu 0 133 1 1501 145 47 63 chr11 52697 53014 -148730458 - AluJb SINE Alu 0 312 1 351 327 60 36 chr11 53830 54215 -148729257 - L2 LINE L2 -66 3206 2813 246 62 0 0 chr11 54870 54902 -148728570 + (CCCTAA)n Simple_repeat Simple_repeat 1 32 0 300 296 84 56 chr11 55144 55286 -148728186 - L1MC4 LINE L1 -10 8032 7887 392 354 86 48 chr11 55295 55852 -148727620 - L1M4c LINE L1 -4896 1488 911 463 266 36 0 chr11 55996 56186 -148727286 - L1MC4 LINE L1 -993 6900 6616 215 175 35 18 chr11 59756 59813 -148723659 + (CCCG)n Simple_repeat Simple_repeat 3 60 0 280 231 66 0 chr11 64341 64432 -148719040 + (CAGCC)n Simple_repeat Simple_repeat 4 100 0 486 49 0 0 chr11 66870 66931 -148716541 + (CA)n Simple_repeat Simple_repeat 2 62 0 811 190 74 0 chr11 67240 67403 -148716069 + MER45A DNA AcHobo 1 175 -3 211 189 0 0 chr11 67769 67806 -148715666 + (CGTG)n Simple_repeat Simple_repeat 3 39 0 262 260 10 30 chr11 76287 76387 -148707085 + (CACG)n Simple_repeat Simple_repeat 2 99 0 690 130 10 0 chr11 78574 78674 -148704798 - AluY SINE Alu -108 203 103 227 183 14 0 chr11 78919 78990 -148704482 - L1MDb LINE L1 -5202 1207 1136 813 193 175 9 chr11 79111 79334 -148704138 - Tigger7 DNA MER2_type -16 2571 2312 564 211 0 68 chr11 79341 79410 -148704062 - Tigger7 DNA MER2_type -562 171 115 2018 121 7 0 chr11 79410 79734 -148703738 + AluSx SINE Alu 1 326 0 564 211 0 68 chr11 79734 79810 -148703662 - Tigger7 DNA MER2_type -618 115 35 1399 210 20 37 chr11 79835 80092 -148703380 - MLT1B LTR MaLR -48 342 91 1485 112 0 31 chr11 80092 80316 -148703156 + AluSg/x SINE Alu 84 300 -10 1399 210 20 37 chr11 80316 80406 -148703066 - MLT1B LTR MaLR -299 91 1 2067 127 0 0 chr11 81989 82288 -148701184 + AluSx SINE Alu 1 299 -13 2176 125 0 3 chr11 82530 82834 -148700638 + AluSx SINE Alu 1 303 -9 1132 190 73 6 chr11 82849 83137 -148700335 + L1MB3 LINE L1 5875 6182 -1 768 293 6 45 chr11 83152 83486 -148699986 + L1MC4 LINE L1 6703 7023 -1019 1389 218 199 31 chr11 83536 84049 -148699423 + MLT1E1 LTR MaLR 56 654 0 384 185 152 26 chr11 84114 84265 -148699207 + L1MC5 LINE L1 7036 7205 -756 566 188 228 0 chr11 84266 84415 -148699057 + MER20 DNA MER1_type 1 183 -36 1869 213 158 4 chr11 84421 84928 -148698544 + MLT1E LTR MaLR 7 591 -2 889 257 139 46 chr11 85055 85581 -148697891 - MLT1E2 LTR MaLR 0 626 52 594 238 0 21 chr11 85642 85785 -148697687 - MER58A DNA MER1_type 0 140 1 400 314 78 26 chr11 86053 86359 -148697113 + L1MC5 LINE L1 7400 7721 -240 215 200 0 0 chr11 87098 87133 -148696339 + polypurine Low_complexity Low_complexity 1 35 0 1122 166 0 3 chr11 87147 87458 -148696014 + (TGGA)n Simple_repeat Simple_repeat 1 311 0 1629 137 4 15 chr11 87559 87830 -148695642 - AluJo SINE Alu -40 272 5 1178 253 102 119 chr11 87835 88426 -148695046 - L1ME1 LINE L1 -223 6012 5413 2275 97 0 0 chr11 88426 88724 -148694748 - AluSq SINE Alu -8 305 8 1178 253 102 119 chr11 88724 89149 -148694323 - L1ME1 LINE L1 -822 5413 4982 899 183 0 12 chr11 89149 89313 -148694159 + AluJb SINE Alu 128 289 -23 1178 253 102 119 chr11 89313 90178 -148693294 - L1ME1 LINE L1 -1253 4982 3978 2089 193 33 0 chr11 90179 90568 -148692904 - MER57A LTR ERV1 0 403 2 940 198 45 0 chr11 90577 90779 -148692693 - MER57A-int LTR ERV1 -47 7490 7280 588 145 23 30 chr11 90779 90910 -148692562 - LTR54B LTR ERV1 -366 132 3 2130 205 13 26 chr11 90910 91378 -148692094 - MER57A-int LTR ERV1 -391 7146 6685 1710 154 48 3 chr11 91692 91984 -148691488 - AluJo SINE Alu -7 305 1 2139 129 3 0 chr11 92209 92518 -148690954 - AluSx SINE Alu -2 310 1 364 320 31 2 chr11 92736 92921 -148690551 - L1M4 LINE L1 -783 5363 5175 1353 111 5 0 chr11 92965 93154 -148690318 - AluY SINE Alu -19 292 103 2188 100 3 3 chr11 93537 93836 -148689636 - AluSx SINE Alu -13 299 1 1937 134 0 49 chr11 93836 94164 -148689308 - AluJb SINE Alu 0 312 1 943 219 24 39 chr11 94166 94234 -148689238 - L1ME1 LINE L1 -4038 2358 2291 1560 166 7 36 chr11 94234 94536 -148688936 - AluJo SINE Alu -19 293 1 943 219 24 39 chr11 94536 94805 -148688667 - L1ME1 LINE L1 -4105 2291 2026 1677 263 69 73 chr11 94815 95658 -148687814 - L1ME1 LINE L1 -5523 873 35 2070 111 0 7 chr11 95826 96124 -148687348 - AluSx SINE Alu -16 296 1 350 276 31 34 chr11 96387 96546 -148686926 + MIR SINE MIR 31 187 -68 450 415 36 36 chr11 96741 97131 -148686341 - L1M4 LINE L1 -1525 4621 4232 304 298 31 19 chr11 97141 97302 -148686170 - L1M4 LINE L1 -1948 4198 4036 890 148 225 11 chr11 97513 97629 -148685843 + AluJo SINE Alu 1 155 -157 1449 158 90 23 chr11 97629 98193 -148685279 + AluJb SINE Alu 3 286 -26 314 98 98 33 chr11 97695 97740 -148685732 + AluJo SINE Alu 87 128 -486 2348 77 7 0 chr11 97740 98039 -148685433 + AluSc SINE Alu 1 301 -8 314 98 98 33 chr11 98039 98219 -148685253 + AluJo SINE Alu 128 614 0 1594 74 5 0 chr11 98667 98870 -148684602 - AluSg/x SINE Alu -20 290 87 2042 62 13 65 chr11 98977 99286 -148684186 - AluY SINE Alu -18 293 1 424 337 58 0 chr11 99286 99458 -148684014 - L1M4 LINE L1 -3109 3037 2856 201 261 25 25 chr11 100062 100181 -148683291 + (TG)n Simple_repeat Simple_repeat 2 120 0 221 240 31 31 chr11 100215 100344 -148683128 + (TG)n Simple_repeat Simple_repeat 2 130 0 243 0 0 0 chr11 100423 100450 -148683022 + (TG)n Simple_repeat Simple_repeat 2 28 0 243 0 0 0 chr11 100694 100721 -148682751 + (TG)n Simple_repeat Simple_repeat 2 28 0 261 294 20 20 chr11 100753 100906 -148682566 + (TG)n Simple_repeat Simple_repeat 2 154 0 243 0 0 0 chr11 100980 101007 -148682465 + (TG)n Simple_repeat Simple_repeat 2 28 0 189 74 0 0 chr11 101228 101255 -148682217 + (TG)n Simple_repeat Simple_repeat 2 28 0 371 193 48 24 chr11 101366 101532 -148681940 + (TG)n Simple_repeat Simple_repeat 1 170 0 369 182 18 18 chr11 107806 107916 -148675556 + (TGGA)n Simple_repeat Simple_repeat 3 112 0 616 242 4 4 chr11 107955 108192 -148675280 + (TGGG)n Simple_repeat Simple_repeat 1 237 0 735 192 0 0 chr11 108193 108370 -148675102 + (TGGA)n Simple_repeat Simple_repeat 1 177 0 205 171 0 0 chr11 108393 108428 -148675044 + (TGGA)n Simple_repeat Simple_repeat 1 35 0 327 330 70 70 chr11 109228 109573 -148673899 + L1ME4a LINE L1 5016 5360 -786 1211 288 76 43 chr11 109625 110306 -148673166 + L1ME4a LINE L1 5418 6121 0 205 156 47 47 chr11 116924 117061 -148666411 + (CAGAGA)n Simple_repeat Simple_repeat 1 137 0 207 100 0 0 chr11 118097 118127 -148665345 + (GA)n Simple_repeat Simple_repeat 2 31 0 207 100 0 0 chr11 118637 118667 -148664805 + (GA)n Simple_repeat Simple_repeat 2 31 0 191 133 22 0 chr11 118823 118868 -148664604 + GA-rich Low_complexity Low_complexity 2 47 0 316 265 31 20 chr11 119073 119171 -148664301 - L3 LINE CR1 -12 1565 1467 766 224 12 9 chr11 125700 126022 -148657450 + (TCCA)n Simple_repeat Simple_repeat 1 323 0 332 263 0 0 chr11 126052 126189 -148657283 + (TCCA)n Simple_repeat Simple_repeat 2 138 0 1652 145 106 0 chr11 127692 127974 -148655498 + AluSx SINE Alu 1 312 0 309 385 70 45 chr11 127994 128306 -148655166 + L1MEd LINE L1 841 1160 -4959 365 328 87 45 chr11 128928 129263 -148654209 + L1MEd LINE L1 758 1106 -5013 195 300 0 43 chr11 129796 129866 -148653606 - L2 LINE L2 -20 3293 3227 2569 42 0 3 chr11 130340 130650 -148652822 - AluY SINE Alu -2 309 1 246 240 0 0 chr11 144843 144893 -148638579 + MIR3 SINE MIR 109 158 -50 289 225 8 4 chr11 147491 147738 -148635734 + (CA)n Simple_repeat Simple_repeat 1 248 0 471 285 26 47 chr11 148541 148734 -148634738 + MER53 DNA DNA 1 189 0 189 167 0 0 chr11 150016 150070 -148633402 + (CACAC)n Simple_repeat Simple_repeat 5 58 0 553 235 92 31 chr11 150793 150989 -148632483 - MER63A DNA MER1_type -2 208 1 2186 103 0 13 chr11 151011 151321 -148632151 - AluSp SINE Alu -7 306 1 21 0 0 0 chr11 156490 156511 -148626961 + AT_rich Low_complexity Low_complexity 1 21 0 396 40 0 0 chr11 156601 156651 -148626821 + (GGA)n Simple_repeat Simple_repeat 1 50 0 944 242 60 4 chr11 158075 158356 -148625116 - MLT1B LTR MaLR -93 297 1 233 202 40 40 chr11 159783 159882 -148623590 - MLT1J2 LTR MaLR -88 362 264 221 234 0 0 chr11 161122 161169 -148622303 - L2 LINE L2 -1 3312 3266 180 0 0 0 chr11 161845 161865 -148621607 + (GA)n Simple_repeat Simple_repeat 1 20 0 331 312 70 28 chr11 162828 163322 -148620150 - MLT1H1 LTR MaLR -15 540 28 555 321 29 7 chr11 163508 163782 -148619690 - MLT2F LTR ERVL -4 659 380 789 297 50 28 chr11 163896 164293 -148619179 + MLT1C LTR MaLR 53 458 -9 1099 210 20 0 chr11 164531 164783 -148618689 - MLT1B LTR MaLR -6 384 128 728 276 107 48 chr11 165111 165531 -148617941 + MLT1C LTR MaLR 17 461 -6 2302 73 20 0 chr11 166381 166683 -148616789 + AluY SINE Alu 2 309 -2 3699 140 42 74 chr11 166934 167610 -148615862 - LTR8 LTR ERV1 -2 689 36 2207 119 0 0 chr11 167610 167920 -148615552 - AluSq SINE Alu -3 310 1 3699 140 42 74 chr11 167920 167955 -148615517 - LTR8 LTR ERV1 -655 36 1 387 0 0 0 chr11 179842 179885 -148603587 + (TG)n Simple_repeat Simple_repeat 1 43 0 211 308 15 0 chr11 180034 180099 -148603373 + C-rich Low_complexity Low_complexity 1 66 0 453 147 0 0 chr11 183900 183995 -148599477 + (CAGCC)n Simple_repeat Simple_repeat 4 98 0 891 129 0 0 chr11 183995 184173 -148599299 + (CCCTG)n Simple_repeat Simple_repeat 3 180 0 264 77 0 0 chr11 184172 184211 -148599261 + (CAGCC)n Simple_repeat Simple_repeat 1 39 0 * 1841 168 27 0 chr11 185089 185386 -148598086 + AluJo SINE Alu 1 305 -7 390 292 28 35 chr11 185922 186066 -148597406 - MIR SINE MIR -118 144 2 2183 103 7 0 chr11 192659 192961 -148590511 - AluSp SINE Alu -7 306 3 376 219 10 0 chr11 193728 193824 -148589648 - L1MB3 LINE L1 -58 6125 6029 1970 125 54 0 chr11 204931 205227 -148578245 - AluSx SINE Alu 0 312 1 1257 280 104 10 chr11 209633 210122 -148573350 + L1MB7 LINE L1 5650 6184 0 321 250 104 0 chr11 218995 219091 -148564381 + MIR SINE MIR 23 128 -134 23 68 0 0 chr11 223468 223512 -148559960 + GC_rich Low_complexity Low_complexity 1 44 0 220 173 29 72 chr11 223980 224119 -148559353 + (CCGCG)n Simple_repeat Simple_repeat 2 134 0 * 380 228 31 19 chr11 224034 224196 -148559276 + (CCCCG)n Simple_repeat Simple_repeat 3 166 0 219 254 16 70 chr11 224226 224411 -148559061 + C-rich Low_complexity Low_complexity 4 178 0 302 100 67 0 chr11 225985 226045 -148557427 - MER53 DNA DNA -1 188 125 2255 100 0 19 chr11 226049 226360 -148557112 - AluSc SINE Alu -4 305 1 210 37 0 0 chr11 226361 226388 -148557084 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1856 146 14 0 chr11 226388 226675 -148556797 - AluSx SINE Alu -21 291 1 794 187 74 20 chr11 226691 226894 -148556578 - L1MC2 LINE L1 -11 6333 6120 * 2247 242 23 0 chr11 226893 227468 -148556004 - L1MC1 LINE L1 -248 6085 5498 180 77 0 0 chr11 227959 227985 -148555487 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 180 125 0 0 chr11 228004 228036 -148555436 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 189 154 0 0 chr11 228164 228203 -148555269 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 384 22 0 0 chr11 228806 228851 -148554621 + (TG)n Simple_repeat Simple_repeat 2 46 0 315 156 21 104 chr11 228851 228936 -148554536 - FRAM SINE Alu -152 150 72 1994 138 3 3 chr11 279176 279459 -148504013 - AluSx SINE Alu -29 283 1 774 124 0 83 chr11 279478 279623 -148503849 - FLAM_C SINE Alu 0 133 1 874 280 94 9 chr11 279630 280052 -148503420 - L1MC1 LINE L1 -864 5282 4785 664 250 30 0 chr11 280052 280220 -148503252 - MER20 DNA MER1_type 0 219 47 467 207 0 0 chr11 280236 280323 -148503149 - MLT1B LTR MaLR -15 375 289 866 217 0 17 chr11 280323 280503 -148502969 - AluSx SINE Alu -133 179 3 1347 256 37 53 chr11 280587 281207 -148502265 - L1MC1 LINE L1 -2508 3638 3029 617 225 0 0 chr11 281214 281334 -148502138 - AluJb SINE Alu -8 304 185 2185 104 24 0 chr11 281875 282163 -148501309 - AluSx SINE Alu -16 296 2 243 292 44 9 chr11 282784 282897 -148500575 - L1M4 LINE L1 -2587 3559 3443 1014 121 0 7 chr11 282944 283084 -148500388 - AluSg/x SINE Alu -10 302 164 414 84 0 92 chr11 283288 283430 -148500042 + (TCTCC)n Simple_repeat Simple_repeat 5 133 0 1829 160 43 62 chr11 283787 284205 -148499267 - MLT2D LTR ERVL 0 414 5 207 230 150 40 chr11 284617 284717 -148498755 + L2 LINE L2 3161 3271 -1 460 117 0 0 chr11 285633 285693 -148497779 + Alu SINE Alu 234 293 -19 1045 208 0 0 chr11 285711 285894 -148497578 - AluJb SINE Alu -5 307 125 1899 116 3 47 chr11 285921 286222 -148497250 - AluSx SINE Alu -24 288 1 327 303 101 8 chr11 286268 286387 -148497085 - L1M4 LINE L1 -3352 2794 2665 2152 116 0 13 chr11 287730 288032 -148495440 + AluSx SINE Alu 1 298 -14 1971 250 82 27 chr11 288105 288746 -148494726 - L1ME1 LINE L1 -141 6094 5413 315 0 0 0 chr11 288746 288781 -148494691 + (TA)n Simple_repeat Simple_repeat 1 35 0 1971 250 82 27 chr11 288781 288807 -148494665 - L1ME1 LINE L1 -822 5413 5390 2103 120 3 42 chr11 288807 289116 -148494356 - AluSx SINE Alu -15 297 1 3832 136 3 8 chr11 289132 289742 -148493730 + L1PB3 LINE L1 5546 6152 -2 22 35 0 0 chr11 289742 289771 -148493701 + AT_rich Low_complexity Low_complexity 1 29 0 308 211 13 40 chr11 289771 289817 -148493655 - L1ME1 LINE L1 -2449 5405 5360 1367 240 3 6 chr11 289817 290130 -148493342 - AluSx SINE Alu 0 312 1 308 211 13 40 chr11 290130 290159 -148493313 - L1ME1 LINE L1 -2494 5360 5332 21 0 0 0 chr11 290159 290180 -148493292 + AT_rich Low_complexity Low_complexity 1 21 0 1328 218 12 65 chr11 290308 290614 -148492858 - L1ME1 LINE L1 -2008 4207 3927 2505 65 0 34 chr11 290614 290936 -148492536 - AluY SINE Alu 0 311 1 1328 218 12 65 chr11 290936 291041 -148492431 - L1ME1 LINE L1 -2288 3927 3818 786 270 40 30 chr11 291043 291339 -148492133 - L1M4 LINE L1 -761 5385 5087 999 204 0 0 chr11 291344 291511 -148491961 + FRAM SINE Alu 1 163 -13 1416 217 72 21 chr11 291512 291940 -148491532 - L1M4 LINE L1 -1059 5087 4638 692 208 8 0 chr11 291942 292067 -148491405 + FLAM_C SINE Alu 2 127 -16 892 267 24 3 chr11 292094 292390 -148491082 - L1M4 LINE L1 -1503 4643 4342 2406 114 0 0 chr11 292396 292703 -148490769 - AluSx SINE Alu -5 307 1 1657 230 41 47 chr11 292710 293201 -148490271 - L1ME1 LINE L1 -4008 2388 1899 2247 117 0 0 chr11 293201 293499 -148489973 + AluSx SINE Alu 1 298 -14 1657 230 41 47 chr11 293499 293563 -148489909 - L1ME1 LINE L1 -4497 1899 1836 195 42 0 0 chr11 293970 293994 -148489478 + (A)n Simple_repeat Simple_repeat 1 24 0 1216 263 51 57 chr11 293996 294643 -148488829 - L1ME1 LINE L1 -4599 1797 1155 2503 88 3 0 chr11 294644 294952 -148488520 - AluY SINE Alu 0 311 3 846 105 0 0 chr11 294952 295057 -148488415 - AluSg/x SINE Alu -14 296 192 320 89 13 0 chr11 295158 295209 -148488263 - Alu SINE Alu -259 41 1 2073 223 58 81 chr11 295233 296014 -148487458 - L1ME1 LINE L1 -5300 1096 334 1720 105 42 0 chr11 296019 296258 -148487214 - AluSx SINE Alu -12 300 52 2045 78 0 0 chr11 296451 296706 -148486766 - AluY SINE Alu 0 311 57 183 42 0 0 chr11 296981 297005 -148486467 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 2017 98 49 0 chr11 297005 297271 -148486201 - AluSx SINE Alu -33 279 1 707 301 105 18 chr11 297952 298145 -148485327 - L2 LINE L2 -756 2558 2383 2306 80 6 16 chr11 298145 298456 -148485016 - AluSx SINE Alu 0 312 5 707 301 105 18 chr11 298456 298654 -148484818 - L2 LINE L2 -931 2383 2133 298 263 50 0 chr11 298838 298937 -148484535 + MIR SINE MIR 2 105 -157 2275 106 0 13 chr11 298982 299283 -148484189 - AluSx SINE Alu -15 297 1 404 301 76 42 chr11 299356 299618 -148483854 + L1M4 LINE L1 5063 5333 -813 373 300 28 22 chr11 299751 300095 -148483377 - L1M3 LINE L1 -728 5452 5106 403 256 23 16 chr11 300154 300283 -148483189 + L1ME3A LINE L1 6011 6140 -30 855 240 413 7 chr11 300740 301178 -148482294 + L1MC4 LINE L1 6469 7084 -958 964 216 90 50 chr11 301276 301424 -148482048 + L1MC4 LINE L1 7322 7463 -579 1292 194 107 38 chr11 301424 301769 -148481703 + MLT1A2 LTR MaLR 2 370 -4 964 216 90 50 chr11 301769 301898 -148481574 + L1MC4 LINE L1 7463 7610 -432 341 248 67 89 chr11 301916 302186 -148481286 - L1M4 LINE L1 -926 5289 5026 342 321 17 46 chr11 302615 302855 -148480617 - L1M4 LINE L1 -1193 5022 4789 1703 271 79 61 chr11 302856 303377 -148480095 - L1MEc LINE L1 -2734 3481 2971 2510 47 0 14 chr11 303377 303674 -148479798 - AluY SINE Alu -17 294 2 1703 271 79 61 chr11 303674 303697 -148479775 - L1MEc LINE L1 -3244 2971 2950 2061 108 34 14 chr11 303697 303993 -148479479 - AluSx SINE Alu -10 302 1 1703 271 79 61 chr11 303993 304595 -148478877 - L1MEc LINE L1 -3265 2950 2360 1608 98 0 0 chr11 304595 304798 -148478674 - AluSg/x SINE Alu -24 286 84 1862 151 0 30 chr11 304800 305104 -148478368 - AluJo SINE Alu -17 295 1 1703 271 79 61 chr11 305104 305300 -148478172 - L1MEc LINE L1 -3855 2360 2169 2008 119 7 4 chr11 305300 305598 -148477874 - AluSg SINE Alu 0 299 1 1703 271 79 61 chr11 305598 306195 -148477277 - L1MEc LINE L1 -4046 2169 1512 233 278 9 56 chr11 306424 306532 -148476940 - MER103 DNA DNA -45 121 19 418 292 96 41 chr11 306678 306897 -148476575 - L1MEc LINE L1 -5162 1043 813 368 36 0 18 chr11 307437 307493 -148475979 - AluY SINE Alu 0 301 247 226 184 41 0 chr11 307471 307520 -148475952 - Alu SINE Alu -250 51 1 * 850 101 0 0 chr11 307546 307655 -148475817 + AluSq/x SINE Alu 3 111 -201 1934 64 4 0 chr11 307655 307889 -148475583 - AluY SINE Alu -76 235 1 1430 112 5 0 chr11 308360 308548 -148474924 + AluSx SINE Alu 1 189 -123 636 181 206 0 chr11 308649 308804 -148474668 - MER34 LTR ERV1 -316 226 40 2091 89 62 3 chr11 308815 309107 -148474365 - AluSc SINE Alu 0 309 1 529 238 177 40 chr11 309188 309663 -148473809 - L1M4 LINE L1 -2848 3298 2759 585 281 14 36 chr11 309664 309764 -148473708 - L1M4 LINE L1 -2479 3667 3566 2234 124 0 6 chr11 309764 310079 -148473393 - AluSq SINE Alu 0 313 1 585 281 14 36 chr11 310079 310199 -148473273 - L1M4 LINE L1 -2580 3566 3452 390 316 109 41 chr11 310496 310889 -148472583 - L1MEc LINE L1 -5611 594 175 457 297 44 27 chr11 311025 311298 -148472174 + L1ME1 LINE L1 2719 3001 -3145 1493 226 30 6 chr11 311298 311634 -148471838 + MER2 DNA MER2_type 1 344 0 457 297 44 27 chr11 311634 311727 -148471745 + L1ME1 LINE L1 3001 3091 -3055 189 139 0 0 chr11 313175 313218 -148470254 + (T)n Simple_repeat Simple_repeat 1 43 0 2393 80 0 22 chr11 313609 313921 -148469551 - AluY SINE Alu -6 305 1 669 317 24 66 chr11 314098 314521 -148468951 + L1ME1 LINE L1 3056 3460 -2686 301 338 60 0 chr11 314649 314782 -148468690 + L1ME1 LINE L1 3623 3763 -2383 1915 53 4 15 chr11 315011 315277 -148468195 + L1PA4 LINE L1 5889 6151 -4 2343 101 7 7 chr11 315392 315700 -148467772 - AluSq SINE Alu -5 308 1 454 250 50 55 chr11 315701 315921 -148467551 - L1M4 LINE L1 -2059 4087 3869 735 223 52 24 chr11 316212 316423 -148467049 + L1ME1 LINE L1 4915 5131 -1015 2380 91 3 0 chr11 316428 316725 -148466747 + AluSx SINE Alu 1 298 -14 889 248 40 0 chr11 316730 316952 -148466520 + L1ME1 LINE L1 5601 5831 -335 1762 196 49 61 chr11 316952 317463 -148466009 + MLT1D LTR MaLR 1 505 0 575 253 17 36 chr11 317505 317722 -148465750 + L1ME1 LINE L1 5820 6024 -154 985 208 81 0 chr11 317850 318071 -148465401 - Tigger3(Golem) DNA MER2_type -1 3028 2790 375 311 0 0 chr11 318084 318187 -148465285 - Tigger3(Golem) DNA MER2_type -2894 135 33 1971 167 0 16 chr11 318209 318526 -148464946 + AluJo SINE Alu 1 312 0 1861 160 82 3 chr11 319222 319578 -148463894 + MLT1B LTR MaLR 1 384 -6 1439 242 111 15 chr11 320715 321174 -148462298 - MLT1D LTR MaLR 0 505 3 270 226 0 59 chr11 323840 323942 -148459530 + L2 LINE L2 3139 3234 -38 187 237 68 0 chr11 324748 324807 -148458665 - MIR SINE MIR -92 170 108 294 247 67 11 chr11 324873 324962 -148458510 - MIR SINE MIR -92 170 77 207 272 19 76 chr11 326066 326224 -148457248 + (CACCC)n Simple_repeat Simple_repeat 1 149 0 222 287 52 9 chr11 326455 326570 -148456902 + (CAGCC)n Simple_repeat Simple_repeat 1 120 0 1598 234 58 11 chr11 326877 327326 -148456146 + MLT1D LTR MaLR 2 471 -34 321 68 0 0 chr11 328137 328181 -148455291 + (CA)n Simple_repeat Simple_repeat 2 45 0 4948 172 31 14 chr11 328183 328567 -148454905 - L1MC2 LINE L1 -114 6230 5854 1732 170 7 3 chr11 328567 328867 -148454605 - AluJb SINE Alu -11 301 1 4948 172 31 14 chr11 328867 329509 -148453963 - L1MC2 LINE L1 -490 5854 5188 232 158 0 0 chr11 329730 329768 -148453704 - L1MC2 LINE L1 -1355 4791 4754 1097 245 129 52 chr11 329779 330022 -148453450 + L2 LINE L2 1824 2047 -1267 2181 119 20 0 chr11 330022 330324 -148453148 - AluSx SINE Alu -4 308 1 1097 245 129 52 chr11 330324 330709 -148452763 + L2 LINE L2 2047 2500 -814 4682 90 21 33 chr11 330709 330880 -148452592 - LTR8 LTR ERV1 0 691 520 351 0 0 0 chr11 330880 330919 -148452553 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 676 36 0 0 chr11 330920 331003 -148452469 - L1PA5 LINE L1 -12 6142 6060 4682 90 21 33 chr11 331003 331527 -148451945 - LTR8 LTR ERV1 -170 521 2 265 246 14 0 chr11 331531 331600 -148451872 + L2 LINE L2 2497 2566 -748 2141 113 3 0 chr11 331740 332031 -148451441 + AluSq SINE Alu 2 293 -20 193 346 13 13 chr11 332235 332313 -148451159 + L2 LINE L2 3234 3311 -2 295 246 0 0 chr11 333157 333222 -148450250 - L2 LINE L2 -3 3310 3246 220 292 0 0 chr11 334117 334165 -148449307 + L2 LINE L2 3003 3050 -263 844 87 46 9 chr11 335130 335350 -148448122 + (TCCA)n Simple_repeat Simple_repeat 1 228 0 922 103 50 0 chr11 335368 335826 -148447646 + (TCCA)n Simple_repeat Simple_repeat 1 480 0 202 231 0 0 chr11 336298 336337 -148447135 + T-rich Low_complexity Low_complexity 2 40 0 1239 227 94 6 chr11 336592 336922 -148446550 - MLT1A1 LTR MaLR -6 359 1 1433 286 91 20 chr11 337354 337517 -148445955 + L2 LINE L2 2036 2186 -1128 1819 140 81 69 chr11 337517 337939 -148445533 - MSTA LTR MaLR -1 427 1 1433 286 91 20 chr11 337939 338352 -148445120 + L2 LINE L2 2186 2667 -647 2453 107 0 0 chr11 338352 338660 -148444812 - AluSg SINE Alu -2 308 1 1433 286 91 20 chr11 338660 338739 -148444733 + L2 LINE L2 2667 2739 -575 642 282 78 103 chr11 338784 339281 -148444191 + L2 LINE L2 2827 3311 -2 520 274 73 6 chr11 339559 339596 -148443876 + L2 LINE L2 2422 2455 -859 2331 72 23 7 chr11 339596 339901 -148443571 - AluSg SINE Alu 0 310 1 520 274 73 6 chr11 339901 340027 -148443445 + L2 LINE L2 2455 2596 -718 398 215 0 0 chr11 340246 340325 -148443147 + Tigger5 DNA MER2_type 1 79 -2244 314 274 0 0 chr11 340380 340453 -148443019 + Tigger5 DNA MER2_type 2248 2320 -3 768 291 34 17 chr11 341057 341291 -148442181 - MIR SINE MIR -24 238 1 457 337 65 42 chr11 341314 341623 -148441849 + L1M4 LINE L1 4254 4569 -1577 658 107 76 0 chr11 341822 342158 -148441314 + (CACTC)n Simple_repeat Simple_repeat 1 361 0 254 323 10 0 chr11 342244 342343 -148441129 + (TCCA)n Simple_repeat Simple_repeat 1 100 0 601 271 60 35 chr11 342872 343156 -148440316 - L1MC4 LINE L1 -1 8041 7751 309 320 58 41 chr11 344244 344416 -148439056 + MIR SINE MIR 80 254 -8 218 273 0 0 chr11 346216 346271 -148437201 + L2 LINE L2 3259 3313 0 980 162 0 0 chr11 346442 346596 -148436876 + AluJb SINE Alu 147 300 -12 513 188 12 6 chr11 346642 346807 -148436665 + (TG)n Simple_repeat Simple_repeat 1 166 0 242 221 0 44 chr11 346811 346879 -148436593 + (TATG)n Simple_repeat Simple_repeat 4 68 0 346 240 17 17 chr11 346902 347081 -148436391 + (TG)n Simple_repeat Simple_repeat 2 180 0 461 225 17 6 chr11 347121 347299 -148436173 + (TG)n Simple_repeat Simple_repeat 1 180 0 562 183 25 18 chr11 347317 347760 -148435712 + (TG)n Simple_repeat Simple_repeat 1 446 0 288 279 66 20 chr11 348316 348513 -148434959 + L1MEc LINE L1 1277 1482 -4914 728 142 15 0 chr11 348755 348889 -148434583 - MER4D LTR ERV1 -13 890 755 773 197 0 15 chr11 348894 349031 -148434441 - AluJo SINE Alu -177 135 1 949 146 32 5 chr11 349031 349216 -148434256 - MER4D LTR ERV1 -133 739 550 989 51 0 0 chr11 349223 349340 -148434132 + AluSx SINE Alu 16 132 -180 383 277 0 43 chr11 349351 349445 -148434027 + L1MC4 LINE L1 6614 6703 -1339 * 386 240 0 62 chr11 349385 349481 -148433991 - L1MC4 LINE L1 -1339 6703 6614 * 423 251 4 24 chr11 349460 349586 -148433886 - L1MCa LINE L1 -1339 6983 1995 239 255 0 0 chr11 349590 349637 -148433835 + (TATATG)n Simple_repeat Simple_repeat 4 50 0 1394 93 0 0 chr11 349637 349819 -148433653 + AluSx SINE Alu 123 304 -6 920 170 6 11 chr11 349846 350028 -148433444 - MER4D LTR ERV1 -463 409 229 428 221 71 0 chr11 350073 350213 -148433259 - MER4D LTR ERV1 -753 150 1 21 0 0 0 chr11 350495 350516 -148432956 + GC_rich Low_complexity Low_complexity 1 21 0 212 182 0 18 chr11 350536 350591 -148432881 + (CCCCG)n Simple_repeat Simple_repeat 5 58 0 312 296 29 48 chr11 352835 353041 -148430431 - L2 LINE L2 -822 2492 2291 301 189 0 95 chr11 359801 359970 -148423502 + CT-rich Low_complexity Low_complexity 3 155 0 312 163 0 56 chr11 359997 360157 -148423315 + (TCCA)n Simple_repeat Simple_repeat 2 152 0 234 0 0 0 chr11 360580 360606 -148422866 + (CTGGGG)n Simple_repeat Simple_repeat 3 28 0 22 70 0 0 chr11 365378 365421 -148418051 + GC_rich Low_complexity Low_complexity 1 43 0 399 333 6 6 chr11 368073 368238 -148415234 + (TG)n Simple_repeat Simple_repeat 2 166 0 276 275 18 0 chr11 368257 368428 -148415044 + (TG)n Simple_repeat Simple_repeat 1 174 0 374 326 17 11 chr11 368509 368687 -148414785 + (TG)n Simple_repeat Simple_repeat 2 180 0 268 278 17 6 chr11 368719 369084 -148414388 + (TG)n Simple_repeat Simple_repeat 1 369 0 224 280 222 0 chr11 369687 369777 -148413695 + MIR SINE MIR 29 137 -71 183 129 0 0 chr11 369888 369919 -148413553 + (TCCA)n Simple_repeat Simple_repeat 2 32 0 692 146 0 0 chr11 370609 370719 -148412753 + AluSg/x SINE Alu 200 309 -1 334 162 34 179 chr11 370719 370836 -148412636 + L1MD1 LINE L1 3185 3284 -2862 803 75 37 0 chr11 370845 370952 -148412520 - AluSq/x SINE Alu -201 111 1 1055 269 0 7 chr11 370954 371236 -148412236 + L1MC1 LINE L1 6039 6318 -15 1159 247 36 50 chr11 371257 371531 -148411941 + L1MD1 LINE L1 4397 4662 -1484 4829 35 0 9 chr11 371531 372102 -148411370 + L1PA5 LINE L1 5589 6154 0 1159 247 36 50 chr11 372102 372329 -148411143 + L1MD1 LINE L1 4662 4891 -1255 764 287 81 12 chr11 372335 372656 -148410816 - MLT1A1 LTR MaLR -17 348 6 515 246 16 26 chr11 372662 372853 -148410619 + L1MD1 LINE L1 4889 5077 -1069 778 227 68 0 chr11 373203 373410 -148410062 + L1M4b LINE L1 94 314 -6545 1557 197 34 151 chr11 373410 374081 -148409391 - LTR8A LTR ERV1 0 727 135 3059 188 85 26 chr11 374087 374955 -148408517 + LTR28 LTR ERV1 1 1020 0 392 232 0 42 chr11 374955 375049 -148408423 - LTR8 LTR ERV1 -572 119 30 2250 265 53 19 chr11 375063 375817 -148407655 + L1M4b LINE L1 311 1090 -5769 1164 220 39 16 chr11 375928 376237 -148407235 + L1MD1 LINE L1 5672 5987 -255 942 189 31 15 chr11 376244 376440 -148407032 + L1MD1 LINE L1 6044 6242 0 1309 303 69 9 chr11 376446 377023 -148406449 + L1MEc LINE L1 31 642 -5754 1183 22 0 0 chr11 377079 377213 -148406259 + AluY SINE Alu 1 134 -177 2494 58 0 0 chr11 377213 377521 -148405951 + AluY SINE Alu 1 308 -3 1082 247 164 0 chr11 377524 377897 -148405575 + L1MEc LINE L1 2673 3106 -3109 1017 199 11 5 chr11 377904 378090 -148405382 + AluJo SINE Alu 1 187 -125 973 305 74 41 chr11 378250 378316 -148405156 - L1MCc LINE L1 -4889 1534 1472 2216 117 0 0 chr11 378316 378624 -148404848 - AluSg SINE Alu -2 308 1 973 305 74 41 chr11 378624 379001 -148404471 - L1MCc LINE L1 -4951 1472 1067 2133 113 0 7 chr11 379001 379302 -148404170 - AluSg SINE Alu -11 299 1 973 305 74 41 chr11 379302 379398 -148404074 - L1MCc LINE L1 -5356 1067 976 273 214 0 18 chr11 379399 379455 -148404017 - L2 LINE L2 -1 3312 3258 21 0 0 0 chr11 379911 379932 -148403540 + AT_rich Low_complexity Low_complexity 1 21 0 2055 135 0 3 chr11 379945 380248 -148403224 + AluSq SINE Alu 1 302 -11 251 282 96 5 chr11 380261 380449 -148403023 + L1M4 LINE L1 4490 4694 -1452 314 340 105 0 chr11 380466 380628 -148402844 + L1M4 LINE L1 4640 4818 -1328 403 356 104 13 chr11 380913 381143 -148402329 + L1M4 LINE L1 5091 5341 -805 287 96 0 58 chr11 381503 381555 -148401917 - AluSp SINE Alu -134 169 121 845 145 8 0 chr11 381579 381703 -148401769 - AluSq/x SINE Alu -187 125 1 340 336 109 51 chr11 381823 381840 -148401632 - L1M4 LINE L1 -1949 4197 4182 2127 129 3 0 chr11 381840 382150 -148401322 - AluSx SINE Alu -1 311 1 340 336 109 51 chr11 382150 382444 -148401028 - L1M4 LINE L1 -1964 4182 3868 254 306 19 28 chr11 384223 384331 -148399141 - LTR16C LTR ERVL 0 491 385 510 226 30 0 chr11 384696 384829 -148398643 + GA-rich Low_complexity Low_complexity 2 138 0 504 168 0 0 chr11 384831 384932 -148398540 + (CAGAGA)n Simple_repeat Simple_repeat 2 102 0 1202 183 9 5 chr11 384944 385168 -148398304 - LTR55 LTR ERV -322 226 2 253 250 37 56 chr11 386989 387097 -148396375 + MLT1A1 LTR MaLR 51 156 -209 547 281 0 0 chr11 387109 387244 -148396228 - MLT-int LTR MaLR -1315 420 286 778 100 9 0 chr11 387245 387355 -148396117 + AluJb SINE Alu 1 111 -201 982 163 6 0 chr11 387440 387600 -148395872 + AluJb SINE Alu 135 295 -17 1030 202 59 29 chr11 387600 387872 -148395600 - MLT-int LTR MaLR -1440 295 16 617 234 24 0 chr11 387929 388096 -148395376 + MLT1A1 LTR MaLR 186 356 -9 1157 206 45 86 chr11 388611 388970 -148394502 + MLT2D LTR ERVL 21 364 -50 322 358 86 55 chr11 388999 389256 -148394216 - L1MC4 LINE L1 -1339 6703 6439 * 327 300 25 69 chr11 389099 389259 -148394213 + L1MCa LINE L1 1915 2067 -4359 25 23 0 23 chr11 389264 389283 -148394189 + AT_rich Low_complexity Low_complexity 1 19 -23 2091 117 3 0 chr11 389283 389573 -148393899 - AluSx SINE Alu -21 291 1 25 23 0 23 chr11 389573 389596 -148393876 + AT_rich Low_complexity Low_complexity 19 42 0 2225 56 40 10 chr11 391048 391403 -148392069 - AluY SINE Alu 0 364 1 207 0 0 0 chr11 391588 391611 -148391861 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 373 187 107 0 chr11 391751 391901 -148391571 + (CACAC)n Simple_repeat Simple_repeat 5 170 0 290 133 107 0 chr11 391913 392063 -148391409 + (CACAC)n Simple_repeat Simple_repeat 5 170 0 229 144 106 0 chr11 392111 392243 -148391229 + (CACAC)n Simple_repeat Simple_repeat 5 150 0 247 151 107 0 chr11 392255 392414 -148391058 + (CACAC)n Simple_repeat Simple_repeat 5 180 0 338 186 16 81 chr11 392442 392566 -148390906 + MLT2D LTR ERVL 293 408 -6 479 143 0 20 chr11 393640 393738 -148389734 + LTR52 LTR ERVL 1 96 -325 381 248 48 0 chr11 393864 393989 -148389483 + LTR52 LTR ERVL 288 418 -3 2124 117 0 0 chr11 393997 394325 -148389147 - AluSx SINE Alu 0 312 1 21 57 0 0 chr11 396074 396109 -148387363 + GC_rich Low_complexity Low_complexity 1 35 0 572 167 0 16 chr11 398325 398451 -148385021 + CT-rich Low_complexity Low_complexity 4 127 0 1335 293 47 11 chr11 398469 398911 -148384561 - L1MB3 LINE L1 -28 6155 5688 1474 221 168 20 chr11 398911 399309 -148384163 - MSTB2 LTR MaLR 0 457 1 1335 293 47 11 chr11 399309 399415 -148384057 - L1MB3 LINE L1 -495 5688 5587 295 329 16 36 chr11 399448 399700 -148383772 + MLT1J LTR MaLR 232 478 -33 181 291 87 19 chr11 402886 402989 -148380483 + L2 LINE L2 3161 3270 -2 26 0 0 0 chr11 404484 404510 -148378962 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr11 404670 404692 -148378780 + GC_rich Low_complexity Low_complexity 1 22 0 256 348 39 0 chr11 405716 405855 -148377617 - MIR SINE MIR -60 148 43 286 293 69 0 chr11 406132 406248 -148377224 + MER45A DNA AcHobo 55 178 0 269 55 16 142 chr11 407018 407201 -148376271 + (TCCTG)n Simple_repeat Simple_repeat 5 164 0 201 75 0 149 chr11 407256 407457 -148376015 + (TCCTG)n Simple_repeat Simple_repeat 1 171 0 284 85 0 144 chr11 407493 407611 -148375861 + (TCCTG)n Simple_repeat Simple_repeat 1 101 0 1177 227 70 23 chr11 407829 408217 -148375255 + MLT1C LTR MaLR 61 466 -1 210 37 0 0 chr11 409451 409478 -148373994 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3374 98 31 2 chr11 409478 409955 -148373517 - L1PA13 LINE L1 -13 6150 5660 1226 169 0 49 chr11 409955 410144 -148373328 + L1P LINE L1 3758 3932 -2214 2179 93 0 35 chr11 410144 410338 -148373134 - AluSx SINE Alu -11 301 121 2435 66 0 10 chr11 410338 410641 -148372831 - AluY SINE Alu -10 301 2 2179 93 0 35 chr11 410641 410758 -148372714 - AluSx SINE Alu -191 121 1 1226 169 0 49 chr11 410758 410834 -148372638 + L1P LINE L1 3932 4010 -2136 201 353 88 24 chr11 411005 411175 -148372297 - MIR SINE MIR -68 194 14 784 282 60 19 chr11 412071 412387 -148371085 - L1ME3A LINE L1 -6 6164 5836 347 328 33 61 chr11 412454 412634 -148370838 + L1MEd LINE L1 649 823 -5707 629 323 37 21 chr11 412650 413025 -148370447 + L1MEd LINE L1 780 1160 -5370 347 306 153 0 chr11 413179 413323 -148370149 + L1MEd LINE L1 2077 2242 -4298 981 278 65 10 chr11 413411 413796 -148369676 + L1MEd LINE L1 3563 3968 -2572 332 239 0 0 chr11 413847 413914 -148369558 + L1M4 LINE L1 3130 3196 -2950 8097 68 12 4 chr11 415457 416456 -148367016 - LTR13 LTR ERVK 0 1007 1 232 105 0 58 chr11 417773 417859 -148365613 + (GGGTG)n Simple_repeat Simple_repeat 5 85 0 380 156 0 39 chr11 417892 418071 -148365401 + (GGGTG)n Simple_repeat Simple_repeat 1 172 0 301 304 65 0 chr11 418218 418356 -148365116 + MER90 LTR ERV1 103 249 -326 227 264 214 0 chr11 418401 418583 -148364889 + MER90 LTR ERV1 344 564 -11 369 313 23 23 chr11 419620 419751 -148363721 - L2 LINE L2 -3 3310 3180 1901 133 59 0 chr11 420738 421024 -148362448 - AluSq SINE Alu -10 303 1 1802 200 99 16 chr11 421274 421310 -148362162 - MER45R DNA AcHobo -39 1542 1510 1980 157 0 0 chr11 421310 421615 -148361857 + AluSg SINE Alu 1 305 -5 1802 200 99 16 chr11 421615 422142 -148361330 - MER45R DNA AcHobo -71 1510 932 1976 223 80 62 chr11 422142 422271 -148361201 - L1MC3 LINE L1 -21 7764 7639 1986 116 4 0 chr11 422271 422548 -148360924 + AluSx SINE Alu 1 278 -34 207 0 0 0 chr11 422554 422577 -148360895 + (CTAAA)n Simple_repeat Simple_repeat 3 25 0 1976 223 80 62 chr11 422577 422588 -148360884 - L1MC3 LINE L1 -150 7635 7626 2177 127 0 0 chr11 422588 422896 -148360576 + AluSx SINE Alu 1 308 -4 1976 223 80 62 chr11 422896 423459 -148360013 - L1MC3 LINE L1 -159 7626 7040 808 153 0 0 chr11 423459 423583 -148359889 - AluSg/x SINE Alu 0 310 187 947 175 24 101 chr11 423583 423921 -148359551 - L1MC3 LINE L1 -742 7043 6732 2824 148 18 4 chr11 423964 424478 -148358994 + LTR43 LTR ERV1 1 521 -81 723 119 90 0 chr11 424468 424602 -148358870 + MER51B LTR ERV1 229 374 -3 * 947 217 83 0 chr11 425235 425475 -148357997 - MLT1C LTR MaLR 0 467 208 2619 153 12 12 chr11 425475 425892 -148357580 + L1PA15 LINE L1 5744 6160 -5 244 204 0 0 chr11 428255 428304 -148355168 - MER53 DNA DNA 0 189 141 24 32 0 0 chr11 429463 429494 -148353978 + AT_rich Low_complexity Low_complexity 1 31 0 216 86 0 0 chr11 430062 430097 -148353375 + (TC)n Simple_repeat Simple_repeat 1 35 0 423 239 193 6 chr11 430097 430273 -148353199 + MLT1F LTR MaLR 170 378 -164 2073 142 0 3 chr11 430329 430640 -148352832 + AluJo SINE Alu 1 310 -2 245 392 0 0 chr11 430757 430877 -148352595 + L1M4 LINE L1 3797 3916 -2230 383 323 63 67 chr11 431137 431360 -148352112 + L1MC5 LINE L1 2176 2397 -4029 1673 151 33 27 chr11 431463 431800 -148351672 - MER1B DNA MER1_type 0 339 1 642 371 80 42 chr11 431988 432602 -148350870 - HAL1b LINE L1 -656 692 56 2103 129 0 3 chr11 432750 433061 -148350411 + AluSx SINE Alu 1 310 -2 2554 42 0 10 chr11 433772 434085 -148349387 - AluY SINE Alu -1 310 1 2452 70 0 0 chr11 434296 434596 -148348876 - AluY SINE Alu -11 300 1 225 197 128 0 chr11 435339 435456 -148348016 + (CTGGGG)n Simple_repeat Simple_repeat 5 136 0 1786 58 0 22 chr11 436406 436629 -148346843 - AluY SINE Alu -9 302 85 714 210 98 28 chr11 437039 437349 -148346123 + L1MC5 LINE L1 3176 7483 -758 642 279 19 20 chr11 437474 437794 -148345678 + MLT1I LTR MaLR 53 405 -4 2485 77 0 22 chr11 438173 438485 -148344987 - AluY SINE Alu -6 305 1 1474 81 0 41 chr11 439513 439710 -148343762 + AluY SINE Alu 106 294 -17 1737 177 0 4 chr11 439726 440024 -148343448 + AluJo SINE Alu 13 309 0 844 126 0 63 chr11 440057 440200 -148343272 - FLAM_A SINE Alu -1 141 8 390 235 71 10 chr11 440373 440471 -148343001 + MLT2B1 LTR ERVL 383 486 -34 354 188 0 0 chr11 440504 440605 -148342867 + (TATG)n Simple_repeat Simple_repeat 2 102 0 675 174 0 0 chr11 440633 440811 -148342661 + (TATG)n Simple_repeat Simple_repeat 3 180 0 216 0 0 0 chr11 440812 440836 -148342636 + (TCTA)n Simple_repeat Simple_repeat 4 27 0 766 257 200 57 chr11 440865 441340 -148342132 + L2 LINE L2 2038 2580 -734 3236 197 76 54 chr11 441427 442431 -148341041 - L1MD1 LINE L1 0 6242 5221 1658 205 20 0 chr11 442449 442752 -148340720 - AluJb SINE Alu 0 312 4 349 177 0 0 chr11 442901 442963 -148340509 + MLT1I LTR MaLR 347 408 -1 314 162 0 29 chr11 443037 443081 -148340391 - MLT2B1 LTR ERVL 0 520 477 182 88 0 29 chr11 443081 443115 -148340357 + (TAGA)n Simple_repeat Simple_repeat 1 33 0 314 162 0 29 chr11 443115 443138 -148340334 - MLT2B1 LTR ERVL -43 477 455 702 148 17 0 chr11 443149 443545 -148339927 + (TAGA)n Simple_repeat Simple_repeat 1 402 0 1706 189 126 2 chr11 443549 443977 -148339495 - MLT2B1 LTR ERVL -39 481 1 1014 276 107 33 chr11 444404 444679 -148338793 + L1ME2 LINE L1 4607 4860 -1286 216 0 0 0 chr11 444679 444703 -148338769 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2045 117 4 0 chr11 444708 444989 -148338483 - AluSx SINE Alu -30 282 1 1014 276 107 33 chr11 444989 445305 -148338167 + L1ME2 LINE L1 4863 5248 -898 256 174 14 14 chr11 445305 445374 -148338098 + (TA)n Simple_repeat Simple_repeat 2 70 0 1146 277 55 23 chr11 445398 445929 -148337543 + L1ME2 LINE L1 5254 5801 -363 1992 172 86 21 chr11 445945 446376 -148337096 + LTR2B LTR ERV1 32 490 0 1220 104 21 16 chr11 446394 446587 -148336885 + AluJb SINE Alu 117 310 -2 425 258 172 18 chr11 446621 446842 -148336630 + L1ME2 LINE L1 5873 6127 -37 670 109 0 0 chr11 446842 446943 -148336529 + FRAM SINE Alu 66 166 -10 2155 106 18 0 chr11 446949 447232 -148336240 + AluSx SINE Alu 3 290 -22 25 40 0 20 chr11 447260 447280 -148336192 + AT_rich Low_complexity Low_complexity 1 20 -29 2219 115 0 7 chr11 447280 447575 -148335897 + AluSq SINE Alu 1 293 -20 25 40 0 20 chr11 447575 447604 -148335868 + AT_rich Low_complexity Low_complexity 20 49 0 205 186 0 0 chr11 447951 447994 -148335478 + T-rich Low_complexity Low_complexity 2 44 0 202 361 0 0 chr11 448919 449088 -148334384 + (CTG)n Simple_repeat Simple_repeat 3 171 0 1238 125 0 0 chr11 449818 449986 -148333486 - AluSg SINE Alu -142 168 1 2657 58 0 0 chr11 450290 450601 -148332871 + AluY SINE Alu 1 311 0 2304 99 0 10 chr11 450944 451257 -148332215 + AluY SINE Alu 1 310 -1 276 186 12 23 chr11 452285 452371 -148331101 + GA-rich Low_complexity Low_complexity 2 86 0 235 333 14 0 chr11 452569 452641 -148330831 - LTR40c LTR ERVL 0 465 393 334 270 107 6 chr11 454653 454812 -148328660 + L1MD2 LINE L1 4597 4771 -1375 765 154 8 15 chr11 454824 454954 -148328518 + FLAM_C SINE Alu 5 133 0 22 0 0 0 chr11 454954 454976 -148328496 + AT_rich Low_complexity Low_complexity 1 22 0 2314 113 3 0 chr11 455193 455504 -148327968 + AluSx SINE Alu 1 312 0 1119 144 0 28 chr11 455504 455684 -148327788 + AluSg/x SINE Alu 132 306 -4 2283 268 83 5 chr11 455686 456903 -148326569 + L1MD2 LINE L1 4982 6349 -10 233 287 87 9 chr11 456926 457041 -148326431 + L1MC4a LINE L1 5895 6018 -1790 23 33 0 0 chr11 457090 457120 -148326352 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr11 457791 457826 -148325646 + GC_rich Low_complexity Low_complexity 1 35 0 409 218 26 13 chr11 460254 460410 -148323062 + CT-rich Low_complexity Low_complexity 2 159 0 354 305 142 4 chr11 460519 460758 -148322714 - L1M4 LINE L1 -1559 4587 4316 * 2790 236 61 37 chr11 460753 461622 -148321850 - L1MB8 LINE L1 -1 6177 5288 2113 301 104 4 chr11 461621 461761 -148321711 - L1M4 LINE L1 -1818 4328 4203 * 189 0 0 0 chr11 461761 461782 -148321690 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2113 301 104 4 chr11 461782 462660 -148320812 - L1M4 LINE L1 -1943 4203 3208 189 0 0 0 chr11 463005 463026 -148320446 + (CA)n Simple_repeat Simple_repeat 2 22 0 301 212 158 68 chr11 463417 463563 -148319909 + L1M2 LINE L1 2744 2902 -3947 347 301 68 37 chr11 463699 463862 -148319610 + L1M2 LINE L1 3462 3629 -3219 1742 257 61 75 chr11 463960 465091 -148318381 - L1M4 LINE L1 -800 5346 4232 405 346 25 18 chr11 465062 465345 -148318127 - L1MEc LINE L1 -5007 1389 1105 * 571 113 0 0 chr11 465435 465515 -148317957 - AluJ/FRAM SINE Alu -17 295 216 3987 252 32 7 chr11 465617 466758 -148316714 + L1M2 LINE L1 3924 5093 -1755 24 53 0 0 chr11 466891 466929 -148316543 + AT_rich Low_complexity Low_complexity 1 38 0 1596 156 81 0 chr11 466975 467282 -148316190 - MER44D DNA MER2_type -3 606 5 23 33 0 0 chr11 467283 467313 -148316159 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr11 467451 467479 -148315993 + AT_rich Low_complexity Low_complexity 1 28 0 2226 99 0 3 chr11 467724 468008 -148315464 + AluSc SINE Alu 1 283 -26 342 0 0 0 chr11 468016 468054 -148315418 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 1774 141 24 24 chr11 468307 468480 -148314992 - L1MC/D LINE L1 -772 5587 5412 2738 204 55 67 chr11 468480 469207 -148314265 - MER72 LTR ERV1 0 722 5 1774 141 24 24 chr11 469207 469367 -148314105 - L1MC/D LINE L1 -946 5413 5254 1875 264 43 17 chr11 469819 470523 -148312949 + L1M4 LINE L1 2685 3406 -2740 2573 124 142 0 chr11 470626 471071 -148312401 + Tigger3(Golem) DNA MER2_type 2520 3027 -2 197 304 69 0 chr11 472045 472147 -148311325 + MIR SINE MIR 27 135 -127 2047 120 10 20 chr11 473098 473399 -148310073 - AluJb SINE Alu -14 298 1 2377 106 0 0 chr11 473716 474017 -148309455 - AluY SINE Alu -10 301 1 968 152 21 21 chr11 474594 474785 -148308687 + L1MB4 LINE L1 5984 6174 -6 612 230 0 24 chr11 474807 474933 -148308539 + FLAM_C SINE Alu 1 123 -10 2405 71 3 0 chr11 474942 475236 -148308236 + AluY SINE Alu 1 295 -16 21 36 0 0 chr11 476945 476973 -148306499 + AT_rich Low_complexity Low_complexity 1 28 0 2217 122 3 0 chr11 477007 477301 -148306171 - AluSx SINE Alu -15 297 3 1004 125 0 0 chr11 477302 477438 -148306034 - AluSq/x SINE Alu -176 136 1 2479 135 37 23 chr11 478316 478752 -148304720 + MER83 LTR ERV1 1 442 -6 307 296 99 0 chr11 478752 478894 -148304578 + L1MC/D LINE L1 5443 5598 -2210 1898 234 23 41 chr11 479569 479673 -148303799 - L1MA9 LINE L1 -37 6275 6171 180 0 0 0 chr11 479673 479693 -148303779 + (TC)n Simple_repeat Simple_repeat 2 21 0 1898 234 23 41 chr11 479693 480100 -148303372 - L1MA9 LINE L1 -141 6171 5773 292 217 0 0 chr11 480097 480157 -148303315 + L1MA9 LINE L1 5933 5992 -320 * 2509 70 0 3 chr11 480379 480691 -148302781 - AluY SINE Alu 0 311 1 454 220 46 0 chr11 480691 480800 -148302672 + MLT1A2 LTR MaLR 260 373 -1 369 0 0 0 chr11 481022 481063 -148302409 + (TG)n Simple_repeat Simple_repeat 1 41 0 2088 132 0 3 chr11 483296 483600 -148299872 + AluSx SINE Alu 7 309 -3 608 38 0 12 chr11 483603 483683 -148299789 + (GGAA)n Simple_repeat Simple_repeat 3 81 0 310 194 74 19 chr11 483687 483795 -148299677 - MLT1C LTR MaLR -52 415 302 249 59 0 0 chr11 483821 483855 -148299617 - MLT1C LTR MaLR -327 140 107 549 333 102 36 chr11 483982 484436 -148299036 - L1M4 LINE L1 -3921 2733 2310 1981 157 3 6 chr11 484436 484748 -148298724 - AluJo SINE Alu -1 311 1 549 333 102 36 chr11 484748 484782 -148298690 - L1M4 LINE L1 -4344 2310 1203 945 166 0 13 chr11 485108 485265 -148298207 - FRAM SINE Alu -22 154 1 221 344 16 33 chr11 485766 485888 -148297584 - MIR3 SINE MIR -84 124 5 1797 154 71 6 chr11 488770 489121 -148294351 - MSTB LTR MaLR 0 426 53 3766 137 4 46 chr11 489121 489973 -148293499 + L1PA16 LINE L1 5372 6161 -2 404 248 6 31 chr11 489969 490130 -148293342 - L1M4 LINE L1 -864 5282 5126 * 348 307 0 0 chr11 491422 491572 -148291900 + (CA)n Simple_repeat Simple_repeat 2 151 0 21 89 0 0 chr11 493636 493692 -148289780 + GC_rich Low_complexity Low_complexity 1 56 0 25 31 0 0 chr11 493798 493830 -148289642 + GC_rich Low_complexity Low_complexity 1 32 0 37 97 0 0 chr11 493876 493990 -148289482 + GC_rich Low_complexity Low_complexity 1 114 0 207 139 0 0 chr11 493990 494026 -148289446 + (CCG)n Simple_repeat Simple_repeat 3 38 0 27 96 0 0 chr11 494040 494123 -148289349 + GC_rich Low_complexity Low_complexity 1 83 0 216 0 0 0 chr11 496764 496788 -148286684 + (CTGGGG)n Simple_repeat Simple_repeat 6 29 0 245 323 114 0 chr11 497249 497390 -148286082 + MER5A DNA MER1_type 1 167 -22 193 279 136 61 chr11 497274 497421 -148286051 - MER5A DNA MER1_type -27 162 5 * 183 339 31 0 chr11 497471 497536 -148285936 - MIR SINE MIR -124 84 18 226 344 98 8 chr11 498138 498260 -148285212 - L2 LINE L2 -223 3049 2917 827 193 13 13 chr11 498913 499063 -148284409 + AluJb SINE Alu 140 289 -23 309 348 11 0 chr11 499066 499155 -148284317 - L1MC4 LINE L1 -1339 6703 6614 * 348 293 38 0 chr11 499098 499204 -148284268 + L1MC4 LINE L1 1959 2068 -4358 * 432 223 10 26 chr11 499183 499286 -148284186 + L1MC4 LINE L1 1995 6983 -1339 302 241 17 0 chr11 499246 499304 -148284168 - L1MCa LINE L1 -4362 2064 2006 * 2123 113 0 0 chr11 499308 499591 -148283881 - AluSx SINE Alu -29 283 1 21 36 0 0 chr11 500139 500167 -148283305 + GC_rich Low_complexity Low_complexity 1 28 0 2096 80 21 11 chr11 501858 502145 -148281327 + AluSq SINE Alu 8 297 -16 781 187 42 37 chr11 502152 502366 -148281106 + L1MB3 LINE L1 5967 6181 -2 183 80 0 0 chr11 502916 502941 -148280531 + (CCGAG)n Simple_repeat Simple_repeat 5 29 0 21 89 0 0 chr11 504887 504943 -148278529 + GC_rich Low_complexity Low_complexity 1 56 0 341 236 7 0 chr11 505124 505272 -148278200 + (CA)n Simple_repeat Simple_repeat 1 149 0 366 252 78 9 chr11 505277 505392 -148278080 + L1MA9 LINE L1 6152 6274 -38 285 263 93 85 chr11 506073 506320 -148277152 + SN5 Other centromeric 1 249 -206 367 74 19 0 chr11 506617 506671 -148276801 + L1MC1 LINE L1 6276 6330 -3 404 340 28 49 chr11 506695 506942 -148276530 - L3 LINE CR1 -541 1036 795 1363 97 5 0 chr11 507135 507364 -148276108 - AluSg/x SINE Alu 0 326 97 279 277 29 36 chr11 507618 507755 -148275717 + MLT1A2 LTR MaLR 239 374 0 787 198 74 33 chr11 507961 508204 -148275268 + MLT1B LTR MaLR 8 260 -130 381 246 131 0 chr11 508433 508563 -148274909 - LTR67 LTR ERVL -1 556 410 234 355 0 0 chr11 508882 508975 -148274497 + MLT1J LTR MaLR 342 434 -77 243 0 0 0 chr11 509140 509167 -148274305 + (CTG)n Simple_repeat Simple_repeat 2 28 0 658 109 0 0 chr11 509688 509780 -148273692 + AluSp/q SINE Alu 210 301 -12 325 282 30 0 chr11 510195 510297 -148273175 + MIR SINE MIR 50 157 -63 2040 116 41 0 chr11 510710 511003 -148272469 + AluSx SINE Alu 1 305 -7 2023 122 28 0 chr11 511003 511291 -148272181 + AluSq SINE Alu 1 296 -17 224 224 0 20 chr11 511459 511508 -148271964 + CT-rich Low_complexity Low_complexity 4 51 0 506 236 202 55 chr11 511509 511801 -148271671 + MLT1J LTR MaLR 36 370 -141 1211 190 5 0 chr11 512230 512441 -148271031 + AluJo SINE Alu 1 212 -100 255 61 0 0 chr11 513442 513475 -148269997 + (GGGA)n Simple_repeat Simple_repeat 4 36 0 671 276 24 68 chr11 513577 513791 -148269681 + L1M4 LINE L1 3106 3309 -2837 2144 139 0 0 chr11 513791 514101 -148269371 + AluSx SINE Alu 1 310 -2 671 276 24 68 chr11 514101 514136 -148269336 + L1M4 LINE L1 3309 3344 -2802 782 156 57 28 chr11 514199 514340 -148269132 + FAM SINE Alu 24 168 -17 941 101 7 0 chr11 514410 514549 -148268923 + AluSg/x SINE Alu 170 309 -1 1964 100 47 0 chr11 514567 514846 -148268626 + AluSg SINE Alu 1 292 -18 1741 128 0 0 chr11 514896 515139 -148268333 + AluSx SINE Alu 1 243 -69 1214 127 0 0 chr11 519038 519211 -148264261 + AluSp SINE Alu 130 302 -11 246 319 104 21 chr11 519522 519666 -148263806 - L1MEc LINE L1 -1892 5049 4894 688 261 55 25 chr11 520128 520475 -148262997 - L1MEc LINE L1 -3597 3344 2984 2226 120 0 3 chr11 520475 520783 -148262689 - AluSx SINE Alu -5 307 1 688 261 55 25 chr11 520783 520799 -148262673 - L1MEc LINE L1 -3957 2984 2970 484 330 35 40 chr11 520818 520856 -148262616 - L1MEc LINE L1 -4313 2809 2772 1817 185 0 0 chr11 520856 521153 -148262319 - AluJb SINE Alu -11 301 5 484 330 35 40 chr11 521153 521314 -148262158 - L1MEc LINE L1 -4350 2772 2611 2004 126 0 32 chr11 521318 521487 -148261985 - AluSg SINE Alu -10 300 144 2200 96 10 3 chr11 521487 521789 -148261683 - AluSq SINE Alu -9 304 1 2004 126 0 32 chr11 521789 521929 -148261543 - AluSg SINE Alu -166 144 1 1102 79 0 0 chr11 521932 522071 -148261401 - AluSq/x SINE Alu -174 139 1 238 305 30 8 chr11 522072 522203 -148261269 - L1MEc LINE L1 -4969 1454 1321 27 49 0 0 chr11 528128 528169 -148255303 + GC_rich Low_complexity Low_complexity 1 41 0 22 70 0 0 chr11 528288 528331 -148255141 + GC_rich Low_complexity Low_complexity 1 43 0 43 47 0 0 chr11 528415 528479 -148254993 + GC_rich Low_complexity Low_complexity 1 64 0 26 64 0 0 chr11 528545 528592 -148254880 + GC_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr11 528696 528717 -148254755 + GC_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr11 530647 530689 -148252783 + AT_rich Low_complexity Low_complexity 1 42 0 2179 116 0 3 chr11 531849 532151 -148251321 - AluSx SINE Alu -11 301 1 1718 259 44 16 chr11 732718 733424 -148050048 + L1ME1 LINE L1 3181 3906 -2240 725 241 97 17 chr11 733432 733473 -148049999 - MLT2D LTR ERVL 0 414 378 312 27 0 0 chr11 733473 733510 -148049962 + (TG)n Simple_repeat Simple_repeat 1 37 0 725 241 97 17 chr11 733510 733705 -148049767 - MLT2D LTR ERVL -36 378 159 1517 118 41 0 chr11 733710 733931 -148049541 - MER30 DNA MER1_type 0 230 1 1035 167 88 26 chr11 733931 734262 -148049210 + MSTB1 LTR MaLR 8 457 0 683 270 23 0 chr11 734262 734426 -148049046 - MLT2D LTR ERVL -246 168 1 977 245 121 13 chr11 734432 734746 -148048726 + L1ME1 LINE L1 3912 4259 -1887 2978 233 42 50 chr11 734750 736509 -148046963 + L1ME1 LINE L1 4344 6096 -70 2169 112 3 6 chr11 736509 736822 -148046650 + AluSx SINE Alu 1 312 0 2978 233 42 50 chr11 736822 736888 -148046584 + L1ME1 LINE L1 6096 6161 -5 497 302 40 31 chr11 736890 737112 -148046360 + ERVL LTR ERVL 2313 2536 -3228 1196 303 27 13 chr11 737136 737509 -148045963 + ERVL LTR ERVL 2492 2869 -2127 773 371 59 19 chr11 737522 738195 -148045277 + ERVL LTR ERVL 3134 3833 -1821 425 297 148 5 chr11 738751 738953 -148044519 + LTR16A1 LTR ERVL 2 232 -225 259 232 18 0 chr11 738996 739052 -148044420 + LTR16A1 LTR ERVL 399 455 -2 606 290 90 33 chr11 740076 740441 -148043031 + L1MCc LINE L1 24 409 -6014 3008 264 52 47 chr11 740712 741169 -148042303 + L1MCc LINE L1 865 1318 -5623 2201 67 3 3 chr11 741169 741495 -148041977 + AluSc SINE Alu 1 326 0 3008 264 52 47 chr11 741495 741536 -148041936 + L1MCc LINE L1 1318 1357 -5584 1671 176 3 22 chr11 741536 741849 -148041623 + AluJo SINE Alu 1 307 -5 3008 264 52 47 chr11 741849 742371 -148041101 + L1MCc LINE L1 1357 1875 -5066 2032 89 64 0 chr11 742371 742652 -148040820 - AluSq SINE Alu -14 299 1 3008 264 52 47 chr11 742652 743496 -148039976 + L1MCc LINE L1 1875 2937 -4004 916 205 0 6 chr11 743496 743657 -148039815 + FRAM SINE Alu 1 160 -6 3008 264 52 47 chr11 743657 744021 -148039451 + L1MCc LINE L1 2937 3297 -3644 2705 234 66 57 chr11 744005 744205 -148039267 + L1MB7 LINE L1 3910 4107 -2039 * 2361 44 14 14 chr11 744205 744502 -148038970 - AluY SINE Alu -12 299 3 2705 234 66 57 chr11 744502 745458 -148038014 + L1MB7 LINE L1 4107 5076 -1070 424 196 55 8 chr11 745463 745632 -148037840 - MER20 DNA MER1_type 0 219 7 987 212 31 16 chr11 745639 745975 -148037497 + L1MB7 LINE L1 5089 5425 -746 242 274 78 0 chr11 746080 746182 -148037290 + L1MB7 LINE L1 5461 5570 -774 397 240 6 6 chr11 746349 746520 -148036952 + (TG)n Simple_repeat Simple_repeat 2 172 0 2588 36 0 0 chr11 747263 747571 -148035901 + AluY SINE Alu 1 308 -3 303 179 0 45 chr11 747863 747930 -148035542 - L1PA11 LINE L1 -2 6172 6109 334 320 53 53 chr11 748438 748682 -148034790 + L1ME3 LINE L1 5887 6130 -32 250 253 81 20 chr11 750047 750146 -148033326 + MIR SINE MIR 44 148 -114 1144 180 70 22 chr11 751800 752080 -148031392 + MLT1B LTR MaLR 60 370 -4 2740 231 66 71 chr11 753838 753940 -148029532 + MER45B DNA AcHobo 25 126 -1455 834 139 8 0 chr11 753940 754069 -148029403 - FLAM_C SINE Alu -3 130 1 2740 231 66 71 chr11 754069 754904 -148028568 + MER45B DNA AcHobo 126 957 -83 1230 101 62 0 chr11 755209 755388 -148028084 + MER107 DNA MER1_type 8 197 0 592 309 98 21 chr11 755616 755901 -148027571 - LTR16B LTR ERVL -14 450 144 281 338 157 12 chr11 755984 756404 -148027068 + L1MC5 LINE L1 7351 7831 -130 27 49 0 0 chr11 758712 758753 -148024719 + GC_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr11 758847 758868 -148024604 + GC_rich Low_complexity Low_complexity 1 21 0 207 325 0 0 chr11 760180 760263 -148023209 + C-rich Low_complexity Low_complexity 6 88 0 242 241 89 13 chr11 762207 762286 -148021186 - MLT1H1 LTR MaLR -5 550 466 1411 232 135 18 chr11 762891 763327 -148020145 + L1MB7 LINE L1 5689 6175 -9 453 262 152 5 chr11 763433 763624 -148019848 - MER58B DNA MER1_type 0 341 123 3430 209 20 7 chr11 763629 764326 -148019146 - L1MB3 LINE L1 -2 6181 5476 1307 162 5 0 chr11 764328 764550 -148018922 - AluSg/x SINE Alu -5 307 85 483 241 0 19 chr11 764591 764699 -148018773 - MER58B DNA MER1_type -230 111 6 182 163 70 0 chr11 765106 765149 -148018323 + L2 LINE L2 3016 3061 -211 905 202 37 24 chr11 765738 766008 -148017464 - MER33 DNA MER1_type -38 325 2 2064 197 84 12 chr11 766043 766555 -148016917 + MER74A LTR ERVL 8 556 -2 251 301 29 19 chr11 766574 766677 -148016795 - MIR SINE MIR -62 146 43 189 248 99 30 chr11 766872 766973 -148016499 + MIR3 SINE MIR 83 190 -18 2319 277 67 26 chr11 767375 768299 -148015173 + L1MEc LINE L1 22 983 -5413 3105 243 45 52 chr11 768550 768923 -148014549 + L1MEc LINE L1 1031 1405 -4991 1993 125 3 0 chr11 768923 769211 -148014261 - AluSp SINE Alu -3 310 22 3105 243 45 52 chr11 769211 769247 -148014225 + L1MEc LINE L1 1405 1440 -4956 207 100 0 0 chr11 769247 769277 -148014195 + (TAAAA)n Simple_repeat Simple_repeat 1 30 0 3105 243 45 52 chr11 769277 769333 -148014139 + L1MEc LINE L1 1440 1495 -4901 2810 155 73 2 chr11 769333 769837 -148013635 + L1MB3 LINE L1 5643 6182 -1 3105 243 45 52 chr11 769837 770742 -148012730 + L1MEc LINE L1 1495 2394 -4002 1101 161 8 42 chr11 770792 771028 -148012444 - MER96B DNA MER1_type? 0 417 190 629 219 29 7 chr11 771029 771166 -148012306 + MLT1F1 LTR MaLR 419 558 -9 6439 249 80 12 chr11 771180 773389 -148010083 + L1MEc LINE L1 2364 4722 -1493 274 107 53 13 chr11 773561 773636 -148009836 + (TA)n Simple_repeat Simple_repeat 2 79 0 817 194 0 48 chr11 773652 773817 -148009655 - AluJo SINE Alu -30 282 126 333 350 38 25 chr11 773828 773988 -148009484 - L1 LINE L1 -1300 4846 4685 239 327 36 42 chr11 774088 774253 -148009219 + L1M4 LINE L1 4531 4694 -1452 287 347 150 16 chr11 774293 774679 -148008793 - HAL1 LINE L1 -843 1664 1227 1476 184 32 0 chr11 774936 775214 -148008258 - AluJo SINE Alu -25 287 1 8298 58 2 5 chr11 775433 776442 -148007030 - LTR13 LTR ERVK 0 1007 2 747 233 142 0 chr11 776546 776786 -148006686 + L1MC4a LINE L1 7035 7308 -500 268 298 26 0 chr11 776986 777100 -148006372 + L1MEc LINE L1 268 384 -6012 504 209 17 0 chr11 777133 777305 -148006167 + GA-rich Low_complexity Low_complexity 2 176 0 399 264 41 8 chr11 777307 777428 -148006044 + L1MEc LINE L1 357 481 -5915 739 341 41 0 chr11 777471 777840 -148005632 + L1MEc LINE L1 559 942 -5454 401 252 49 0 chr11 777872 777995 -148005477 + L1MC4 LINE L1 7914 8042 0 258 288 7 14 chr11 778443 778589 -148004883 + (CA)n Simple_repeat Simple_repeat 1 145 0 2340 68 0 0 chr11 778609 778902 -148004570 - AluY SINE Alu -18 293 1 226 291 58 0 chr11 779043 779129 -148004343 - L2 LINE L2 -609 2705 2615 1629 181 22 16 chr11 779198 779518 -148003954 + L1MB3 LINE L1 5862 6183 0 599 155 10 0 chr11 780473 780576 -148002896 - L1MB7 LINE L1 -11 6173 6070 481 188 52 155 chr11 781630 781843 -148001629 - L1MB7 LINE L1 -75 6103 5913 275 302 32 8 chr11 781865 781991 -148001481 - ERVL LTR ERVL -46 5718 5590 21 0 0 0 chr11 782020 782041 -148001431 + AT_rich Low_complexity Low_complexity 1 21 0 2275 95 20 0 chr11 782108 782414 -148001058 - AluSx SINE Alu 0 312 1 2449 298 70 18 chr11 782414 783416 -148000056 - ERVL LTR ERVL -195 5569 4516 1335 252 32 28 chr11 783631 784064 -147999408 - ERVL LTR ERVL -1535 4229 3795 * 1801 248 71 8 chr11 784048 784540 -147998932 - ERVL LTR ERVL -2176 3588 3066 1702 169 66 3 chr11 784595 784974 -147998498 + L1MC2 LINE L1 5928 6330 -14 2487 263 58 8 chr11 784984 785710 -147997762 - ERVL LTR ERVL -3180 2584 1823 228 67 0 0 chr11 786760 786790 -147996682 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 1414 204 33 84 chr11 786798 787191 -147996281 - MLT1A2 LTR MaLR 0 374 2 206 222 99 0 chr11 788868 788949 -147994523 + (CATG)n Simple_repeat Simple_repeat 1 89 0 257 254 0 65 chr11 789140 789325 -147994147 + G-rich Low_complexity Low_complexity 4 176 0 * 488 231 29 0 chr11 789191 789432 -147994040 + (GGGTG)n Simple_repeat Simple_repeat 1 247 0 240 111 0 0 chr11 791172 791208 -147992264 + (GGGGA)n Simple_repeat Simple_repeat 2 37 0 423 165 0 0 chr11 795052 795137 -147988335 + (TG)n Simple_repeat Simple_repeat 2 86 0 288 77 0 0 chr11 795610 795649 -147987823 + (GA)n Simple_repeat Simple_repeat 1 39 0 466 209 11 33 chr11 795786 795968 -147987504 + G-rich Low_complexity Low_complexity 1 178 0 * 549 164 0 53 chr11 795950 796139 -147987333 + GA-rich Low_complexity Low_complexity 1 179 0 323 179 0 0 chr11 799703 799759 -147983713 + MIR SINE MIR 90 145 -63 307 128 58 0 chr11 801068 801154 -147982318 + (CAGGG)n Simple_repeat Simple_repeat 4 94 0 206 269 64 13 chr11 801970 802048 -147981424 - L2 LINE L2 -210 3062 2981 318 265 128 0 chr11 803001 803103 -147980369 - MER45A DNA AcHobo 0 178 64 902 114 0 50 chr11 803103 803243 -147980229 + FLAM_C SINE Alu 1 133 0 211 273 0 0 chr11 804222 804277 -147979195 + C-rich Low_complexity Low_complexity 5 59 0 833 270 34 0 chr11 806851 807114 -147976358 - MLT1E2 LTR MaLR 0 626 355 2067 157 23 0 chr11 807166 807509 -147975963 - L1MB3 LINE L1 -7 6176 5826 1732 142 4 25 chr11 807837 808118 -147975354 + AluJo SINE Alu 22 296 -16 2065 111 0 20 chr11 808120 808449 -147975023 + AluSq SINE Alu 1 313 0 1159 128 0 0 chr11 808449 808613 -147974859 + AluSg/x SINE Alu 134 297 -15 315 0 0 0 chr11 808617 808632 -147974840 + (TG)n Simple_repeat Simple_repeat 1 50 0 315 0 0 0 chr11 808632 808667 -147974805 + (TG)n Simple_repeat Simple_repeat 2 36 0 201 40 0 100 chr11 808690 808740 -147974732 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 767 100 0 27 chr11 810783 810893 -147972579 + U6 snRNA snRNA 1 107 0 7763 116 10 9 chr11 810893 813060 -147970412 + L1PA11 LINE L1 3979 6153 -21 2596 165 66 23 chr11 813066 813506 -147969966 - Tigger3b DNA MER2_type -2440 588 117 2944 88 0 3 chr11 813506 813882 -147969590 + THE1C LTR MaLR 1 375 0 2596 165 66 23 chr11 813882 814005 -147969467 - Tigger3b DNA MER2_type -2911 117 1 7050 180 66 19 chr11 814005 815100 -147968372 + ERVL LTR ERVL 2185 3371 -2393 2157 132 50 19 chr11 815100 815464 -147968008 - THE1C LTR MaLR 0 375 1 7050 180 66 19 chr11 815464 815865 -147967607 + ERVL LTR ERVL 3371 3752 -2012 3851 246 77 44 chr11 815865 816686 -147966786 - THE1C-int LTR MaLR -205 1446 554 1579 57 0 0 chr11 816686 816880 -147966592 - L1PA4 LINE L1 0 6155 5962 3851 246 77 44 chr11 816880 817454 -147966018 - THE1C-int LTR MaLR -1097 554 1 1294 200 134 45 chr11 817454 817789 -147965683 - MLT1A1 LTR MaLR 0 365 1 240 234 16 31 chr11 818281 818345 -147965127 + MLT1I LTR MaLR 347 409 0 470 208 42 76 chr11 818734 818878 -147964594 + MLT1J2 LTR MaLR 20 158 -292 665 224 61 0 chr11 819024 819171 -147964301 + MER5A DNA MER1_type 8 163 -26 289 136 0 0 chr11 819182 819226 -147964246 + AluSx SINE Alu 1 44 -256 246 217 0 0 chr11 819234 819280 -147964192 - MSTD LTR MaLR -127 269 224 1812 137 0 0 chr11 819284 819546 -147963926 + AluSx SINE Alu 41 302 -10 224 311 0 0 chr11 819564 819638 -147963834 - L2 LINE L2 -2241 1073 1000 993 229 121 36 chr11 820030 820310 -147963162 - MLT2B1 LTR ERVL -1 519 205 2092 161 83 14 chr11 820310 820731 -147962741 - LTR7 LTR ERV1 0 450 1 993 229 121 36 chr11 820731 820782 -147962690 - MLT2B1 LTR ERVL -315 205 160 387 41 0 0 chr11 820803 820852 -147962620 + (TCTCCC)n Simple_repeat Simple_repeat 1 49 0 6346 62 16 73 chr11 820852 822560 -147960912 + SVA Other Other 57 1386 0 2074 112 3 0 chr11 823354 823663 -147959809 - AluSg SINE Alu 0 310 1 924 292 111 37 chr11 823664 824096 -147959376 - L1M4 LINE L1 -1275 4871 4408 511 73 0 12 chr11 824109 824191 -147959281 + LTR10E LTR ERV1 4 84 -549 2310 107 153 20 chr11 824852 825310 -147958162 + LTR10E LTR ERV1 72 590 -43 999 234 55 64 chr11 825328 825861 -147957611 + HERVI LTR ERV1 3 314 -6335 1219 165 93 8 chr11 826079 826519 -147956953 + HERVI LTR ERV1 840 2694 -3955 723 260 0 6 chr11 826510 826691 -147956781 + HERVI LTR ERV1 3138 3317 -4468 * 3378 172 46 54 chr11 826672 827581 -147955891 + HERVI LTR ERV1 953 4388 -3397 4141 51 7 28 chr11 827581 827838 -147955634 + LTR10C LTR ERV1 1 262 -329 1368 199 102 60 chr11 827838 828270 -147955202 - LTR7 LTR ERV1 0 450 1 4141 51 7 28 chr11 828270 828388 -147955084 + LTR10C LTR ERV1 262 381 -210 3514 57 2 13 chr11 828388 828841 -147954631 + LTR7 LTR ERV1 1 448 -2 4141 51 7 28 chr11 828841 829068 -147954404 + LTR10C LTR ERV1 381 591 0 981 35 0 7 chr11 829069 829212 -147954260 + Harlequin LTR ERV1 1587 1728 -5168 277 244 39 13 chr11 829212 829290 -147954182 - LTR8 LTR ERV1 -456 235 156 4449 128 33 27 chr11 829294 830114 -147953358 + Harlequin LTR ERV1 2160 2984 -3912 2816 247 9 9 chr11 830176 830935 -147952537 + Harlequin LTR ERV1 3345 5911 -738 2823 94 163 16 chr11 831091 831643 -147951829 + LTR10E LTR ERV1 1 633 0 593 185 86 0 chr11 831644 831795 -147951677 - MLT2B2 LTR ERVL -351 164 1 1275 181 39 11 chr11 832143 832425 -147951047 - MLT1B LTR MaLR -3 387 98 1123 158 0 0 chr11 832427 832592 -147950880 - FRAM SINE Alu 0 166 2 854 106 194 12 chr11 832593 832763 -147950709 - MSTA LTR MaLR 0 428 228 953 152 25 15 chr11 832764 832959 -147950513 + THE1C LTR MaLR 178 375 0 1671 285 93 17 chr11 833016 833137 -147950335 + HERVL LTR ERVL 1585 1695 -3301 2297 156 34 3 chr11 833137 833515 -147949957 + MLT1B LTR MaLR 1 390 0 1671 285 93 17 chr11 833515 834115 -147949357 + HERVL LTR ERVL 1695 2357 -2639 1026 213 17 0 chr11 834154 834382 -147949090 + MLT2B1 LTR ERVL 1 232 -288 2138 141 39 0 chr11 834382 834766 -147948706 - MSTB1 LTR MaLR 0 432 34 618 217 22 7 chr11 834815 834953 -147948519 + MLT2B1 LTR ERVL 331 470 -50 459 383 27 6 chr11 835158 835495 -147947977 + HERVL LTR ERVL 3926 4269 -1385 275 367 44 39 chr11 835904 836473 -147946999 + HERVL LTR ERVL 4741 5312 -342 2453 161 14 45 chr11 836528 837043 -147946429 - MLT2B3 LTR ERVL -1 553 55 548 92 0 0 chr11 837044 837128 -147946344 + MLT2B3 LTR ERVL 1 84 -470 1314 130 80 58 chr11 837128 837504 -147945968 + MSTA LTR MaLR 1 401 -27 1635 168 47 0 chr11 837504 837857 -147945615 - AluSx SINE Alu 0 367 1 10023 169 10 9 chr11 837898 839547 -147943925 + MSTB-int LTR MaLR 1 1651 0 2170 153 112 5 chr11 839547 839932 -147943540 + MSTB LTR MaLR 1 426 0 326 137 0 0 chr11 839932 839983 -147943489 + MLT2B3 LTR ERVL 80 130 -424 986 211 133 58 chr11 839983 840381 -147943091 - MSTC LTR MaLR 0 428 1 5513 236 63 44 chr11 840381 841867 -147941605 - MSTC-int LTR MaLR 0 1735 212 2417 57 0 0 chr11 841867 842163 -147941309 - AluY SINE Alu -15 296 1 5513 236 63 44 chr11 842163 842360 -147941112 - MSTC-int LTR MaLR -1523 212 20 482 249 29 23 chr11 842379 842552 -147940920 - MLT1A1 LTR MaLR 0 365 192 584 204 8 54 chr11 842593 842754 -147940718 - MLT1A1 LTR MaLR -183 182 30 1894 114 48 14 chr11 842754 843044 -147940428 + AluSx SINE Alu 1 300 -12 584 204 8 54 chr11 843044 843073 -147940399 - MLT1A1 LTR MaLR -335 30 1 * 1583 186 32 74 chr11 843073 843476 -147939996 + MLT2B3 LTR ERVL 130 515 -39 2308 86 0 3 chr11 843503 843805 -147939667 - AluSc SINE Alu -8 301 1 225 163 0 0 chr11 843811 843854 -147939618 + MLT2B3 LTR ERVL 471 513 -7 23866 202 44 31 chr11 843859 845152 -147938320 + ERVL-B3-B3 LTR ERVL 3 1278 -4486 3638 133 9 6 chr11 845152 845677 -147937795 + MER1A DNA MER1_type 1 527 0 23866 202 44 31 chr11 845677 847632 -147935840 + ERVL-B3-B3 LTR ERVL 1278 3207 -2557 2061 111 3 0 chr11 847632 847921 -147935551 + AluSx SINE Alu 23 312 0 23866 202 44 31 chr11 847921 849777 -147933695 + ERVL-B3-B3 LTR ERVL 3207 5189 -575 2478 58 0 3 chr11 849777 850088 -147933384 + AluY SINE Alu 1 310 -1 23866 202 44 31 chr11 850088 850665 -147932807 + ERVL-B3-B3 LTR ERVL 5189 5757 -7 2340 160 59 30 chr11 850665 851159 -147932313 + MLT2B3 LTR ERVL 1 508 -46 447 52 0 0 chr11 851161 851219 -147932253 + (TCCA)n Simple_repeat Simple_repeat 3 60 0 1014 126 0 0 chr11 851222 851338 -147932134 + (TCTG)n Simple_repeat Simple_repeat 1 283 0 1014 126 0 0 chr11 851338 851505 -147931967 + (TCTG)n Simple_repeat Simple_repeat 2 168 0 534 295 68 31 chr11 851662 851987 -147931485 + LTR16A LTR ERVL 87 423 -27 1304 221 67 38 chr11 852360 852780 -147930692 - MLT1C LTR MaLR 0 467 36 609 209 54 106 chr11 853392 853534 -147929938 - MER39 LTR ERV1 -6 682 534 2002 110 4 4 chr11 853534 853815 -147929657 + AluSx SINE Alu 30 310 -2 609 209 54 106 chr11 853815 853917 -147929555 - MER39 LTR ERV1 -154 534 450 2552 124 72 10 chr11 853917 854320 -147929152 - MSTA LTR MaLR 0 428 1 609 209 54 106 chr11 854320 854358 -147929114 - MER39 LTR ERV1 -238 450 412 764 262 161 0 chr11 854363 854611 -147928861 - MSTD LTR MaLR -1 395 108 330 270 78 26 chr11 855179 855294 -147928178 - L2 LINE L2 -2 3311 3191 246 308 132 0 chr11 858425 858607 -147924865 + L2 LINE L2 2556 2761 -553 245 279 0 0 chr11 859064 859125 -147924347 + MER89 LTR ERV1 2 62 -497 342 271 92 28 chr11 859133 859351 -147924121 + MER89 LTR ERV1 182 413 -146 2250 87 0 3 chr11 859378 859678 -147923794 - AluY SINE Alu -12 299 1 5689 203 27 33 chr11 859693 860157 -147923315 - L1MB7 LINE L1 -11 6173 5708 1988 130 0 3 chr11 860157 860470 -147923002 + AluSx SINE Alu 1 312 0 5689 203 27 33 chr11 860470 860536 -147922936 - L1MB7 LINE L1 -476 5708 5643 414 0 0 0 chr11 860536 860582 -147922890 + (CA)n Simple_repeat Simple_repeat 2 47 0 5689 203 27 33 chr11 860582 861196 -147922276 - L1MB7 LINE L1 -541 5643 5027 2353 103 0 0 chr11 861196 861508 -147921964 - AluSx SINE Alu 0 312 1 5689 203 27 33 chr11 861508 861707 -147921765 - L1MB7 LINE L1 -1157 5027 4828 872 80 0 0 chr11 861707 861819 -147921653 + HY1 scRNA scRNA 1 112 0 5689 203 27 33 chr11 861819 862452 -147921020 - L1MB7 LINE L1 -1356 4828 4211 1936 178 36 22 chr11 862452 862812 -147920660 - MLT1A1 LTR MaLR 0 365 1 5689 203 27 33 chr11 862812 863192 -147920280 - L1MB7 LINE L1 -1973 4211 3830 576 219 41 0 chr11 863215 863361 -147920111 + MER89 LTR ERV1 407 558 -1 417 280 57 96 chr11 864371 864703 -147918769 + L2 LINE L2 2953 3271 -1 662 286 130 0 chr11 865170 865355 -147918117 - MER3 DNA MER1_type 0 209 1 198 152 136 91 chr11 865954 866020 -147917452 + L2 LINE L2 3027 3095 -177 204 183 50 0 chr11 866278 866338 -147917134 + G-rich Low_complexity Low_complexity 2 64 0 22 70 0 0 chr11 866445 866488 -147916984 + GC_rich Low_complexity Low_complexity 1 43 0 233 174 26 70 chr11 866508 866623 -147916849 + (CCCG)n Simple_repeat Simple_repeat 3 112 0 283 261 7 25 chr11 868277 868556 -147914916 + G-rich Low_complexity Low_complexity 1 273 0 243 213 0 0 chr11 869463 869538 -147913934 + (CA)n Simple_repeat Simple_repeat 1 75 0 185 333 14 0 chr11 869790 869859 -147913613 + MIR SINE MIR 84 153 -109 295 168 15 128 chr11 873421 873617 -147909855 + (GGGTG)n Simple_repeat Simple_repeat 3 176 0 509 213 19 0 chr11 874265 874373 -147909099 - L1MA10 LINE L1 -2 6332 6223 1266 269 43 38 chr11 874777 875377 -147908095 - L1ME2 LINE L1 -311 5853 5254 350 232 6 39 chr11 926336 926674 -147856798 + G-rich Low_complexity Low_complexity 1 326 0 206 337 6 33 chr11 926683 926864 -147856608 + (GGGTG)n Simple_repeat Simple_repeat 4 179 0 * 370 333 0 32 chr11 926738 926924 -147856548 + G-rich Low_complexity Low_complexity 1 180 0 1973 123 10 3 chr11 927352 927644 -147855828 - AluSq SINE Alu -19 294 1 298 239 77 58 chr11 927688 927843 -147855629 - L1MC5 LINE L1 -927 7034 6877 387 0 0 0 chr11 928032 928075 -147855397 + (CA)n Simple_repeat Simple_repeat 2 44 0 529 343 26 22 chr11 929094 929362 -147854110 - L1MC4 LINE L1 -16 8026 7758 2640 102 5 30 chr11 929475 929848 -147853624 + THE1B LTR MaLR 1 364 0 4562 125 38 2 chr11 929848 930649 -147852823 + THE1B-int LTR MaLR 1 829 -751 2846 283 28 45 chr11 931164 931760 -147851712 - L1MC4a LINE L1 -288 7520 6948 2111 119 10 3 chr11 931760 932071 -147851401 - AluSq SINE Alu 0 313 1 2846 283 28 45 chr11 932071 932536 -147850936 - L1MC4a LINE L1 -860 6948 6477 280 264 27 0 chr11 934039 934128 -147849344 + MIR3 SINE MIR 63 157 -51 243 246 35 0 chr11 934765 934822 -147848650 + MIR SINE MIR 64 122 -86 689 148 9 0 chr11 935068 935176 -147848296 + FRAM SINE Alu 62 170 -6 34 65 0 0 chr11 935948 936010 -147847462 + AT_rich Low_complexity Low_complexity 1 62 0 186 43 0 0 chr11 936708 936731 -147846741 + (CCCCAG)n Simple_repeat Simple_repeat 6 28 0 401 353 107 43 chr11 937723 938191 -147845281 - HAL1 LINE L1 -1206 1301 880 245 346 0 32 chr11 938386 938571 -147844901 + GA-rich Low_complexity Low_complexity 1 179 0 379 335 12 12 chr11 939799 939969 -147843503 + (TCCA)n Simple_repeat Simple_repeat 2 171 0 225 65 0 0 chr11 941183 941214 -147842258 + (GGGA)n Simple_repeat Simple_repeat 4 34 0 856 298 79 74 chr11 942774 943002 -147840470 - L1MC5 LINE L1 -397 7564 7339 231 61 0 0 chr11 943002 943035 -147840437 + (TCCA)n Simple_repeat Simple_repeat 1 33 0 856 298 79 74 chr11 943035 943797 -147839675 - L1MC5 LINE L1 -622 7339 6555 1412 241 33 9 chr11 943874 944301 -147839171 - L1PA16 LINE L1 -5 6161 5725 227 213 0 29 chr11 948215 948351 -147835121 + G-rich Low_complexity Low_complexity 1 132 0 222 227 0 0 chr11 949316 949391 -147834081 + (CA)n Simple_repeat Simple_repeat 1 75 0 185 333 14 0 chr11 949643 949712 -147833760 + MIR SINE MIR 84 153 -109 264 252 9 28 chr11 955526 955633 -147827839 + (CACCC)n Simple_repeat Simple_repeat 2 106 0 567 139 0 0 chr11 956828 956929 -147826543 + (TG)n Simple_repeat Simple_repeat 2 102 0 222 211 35 0 chr11 957381 957622 -147825850 + (GGGTG)n Simple_repeat Simple_repeat 1 249 0 240 111 0 0 chr11 959357 959393 -147824079 + (GGGGA)n Simple_repeat Simple_repeat 2 37 0 208 135 0 27 chr11 961121 961158 -147822314 + (GGGA)n Simple_repeat Simple_repeat 4 39 0 318 250 0 40 chr11 962133 962209 -147821263 + L1M4 LINE L1 4581 4653 -1493 274 107 53 13 chr11 962381 962456 -147821016 + (TA)n Simple_repeat Simple_repeat 2 79 0 824 194 0 48 chr11 962472 962637 -147820835 - AluJo SINE Alu -30 282 126 364 350 38 25 chr11 962648 962808 -147820664 - L1 LINE L1 -1300 4846 4685 353 365 65 34 chr11 962810 963073 -147820399 + L1M4 LINE L1 4424 4694 -1452 * 680 364 114 15 chr11 963066 963660 -147819812 - L1MEd LINE L1 -843 1647 954 1518 184 32 0 chr11 963756 964034 -147819438 - AluJo SINE Alu -25 287 1 8315 58 2 5 chr11 964252 965261 -147818211 - LTR13 LTR ERVK 0 1007 2 677 233 142 0 chr11 965365 965605 -147817867 + L1MC4a LINE L1 7035 7308 -500 250 253 24 0 chr11 965805 965888 -147817584 + L1MEc LINE L1 268 352 -6044 526 213 13 0 chr11 965895 966125 -147817347 + GA-rich Low_complexity Low_complexity 1 233 0 863 322 80 14 chr11 966127 966677 -147816795 + L1MEc LINE L1 357 942 -5454 419 236 49 0 chr11 966709 966832 -147816640 + L1MC4 LINE L1 7914 8042 0 294 293 6 12 chr11 967280 967444 -147816028 + (CA)n Simple_repeat Simple_repeat 1 163 0 2398 61 0 0 chr11 967464 967757 -147815715 - AluY SINE Alu -18 293 1 238 291 58 0 chr11 967898 967984 -147815488 - L2 LINE L2 -609 2705 2615 1647 181 22 16 chr11 968053 968373 -147815099 + L1MB3 LINE L1 5862 6183 0 569 165 10 0 chr11 969328 969431 -147814041 - L1MB7 LINE L1 -11 6173 6070 445 244 71 0 chr11 971049 971176 -147812296 - L1MB7 LINE L1 -136 6048 5913 250 302 32 8 chr11 971198 971324 -147812148 - ERVL LTR ERVL -46 5718 5590 2204 98 20 0 chr11 971441 971736 -147811736 - AluSx SINE Alu -11 301 1 2190 298 70 18 chr11 971736 972735 -147810737 - ERVL LTR ERVL -195 5569 4519 1325 254 32 28 chr11 972953 973386 -147810086 - ERVL LTR ERVL -1535 4229 3795 * 1801 248 71 8 chr11 973370 973862 -147809610 - ERVL LTR ERVL -2176 3588 3066 1937 165 80 3 chr11 973917 974304 -147809168 + L1MC2 LINE L1 5928 6344 0 2487 263 58 8 chr11 974306 975032 -147808440 - ERVL LTR ERVL -3180 2584 1823 228 67 0 0 chr11 976079 976109 -147807363 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 1405 204 33 84 chr11 976117 976509 -147806963 - MLT1A2 LTR MaLR 0 374 3 236 200 36 18 chr11 979088 979143 -147804329 + MIR SINE MIR 90 145 -63 307 128 58 0 chr11 980449 980535 -147802937 + (CAGGG)n Simple_repeat Simple_repeat 4 94 0 206 269 64 13 chr11 981348 981426 -147802046 - L2 LINE L2 -210 3062 2981 318 265 128 0 chr11 982381 982483 -147800989 - MER45A DNA AcHobo 0 178 64 902 114 0 50 chr11 982483 982623 -147800849 + FLAM_C SINE Alu 1 133 0 525 218 18 0 chr11 983567 983677 -147799795 - MLT1E2 LTR MaLR -160 466 355 2067 157 23 0 chr11 983729 984072 -147799400 - L1MB3 LINE L1 -7 6176 5826 1803 142 4 25 chr11 984400 984681 -147798791 + AluJo SINE Alu 22 296 -16 2060 108 0 25 chr11 984695 984969 -147798503 + AluSq SINE Alu 14 282 -31 207 31 0 31 chr11 984969 985001 -147798471 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 2060 108 0 25 chr11 985001 985012 -147798460 + AluSq SINE Alu 282 292 -21 1232 117 0 0 chr11 985012 985174 -147798298 + AluSg/x SINE Alu 134 295 -17 351 0 0 0 chr11 985178 985191 -147798281 + (TG)n Simple_repeat Simple_repeat 1 52 0 351 0 0 0 chr11 985191 985230 -147798242 + (TG)n Simple_repeat Simple_repeat 2 40 0 201 40 0 100 chr11 985253 985303 -147798169 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 381 22 0 0 chr11 985425 985471 -147798001 + (TCCA)n Simple_repeat Simple_repeat 2 47 0 876 129 0 0 chr11 985473 985601 -147797871 + (TCTG)n Simple_repeat Simple_repeat 1 275 0 876 129 0 0 chr11 985601 985748 -147797724 + (TCTG)n Simple_repeat Simple_repeat 2 148 0 584 295 68 31 chr11 985905 986230 -147797242 + LTR16A LTR ERVL 87 423 -27 1368 221 67 38 chr11 986603 987023 -147796449 - MLT1C LTR MaLR 0 467 36 664 202 70 105 chr11 987633 987775 -147795697 - MER39 LTR ERV1 -6 682 537 2109 109 3 3 chr11 987775 988058 -147795414 + AluSx SINE Alu 30 312 0 664 202 70 105 chr11 988058 988160 -147795312 - MER39 LTR ERV1 -151 537 454 2122 136 66 24 chr11 988160 988571 -147794901 - MSTA LTR MaLR 0 428 1 664 202 70 105 chr11 988571 988613 -147794859 - MER39 LTR ERV1 -234 454 412 810 210 194 32 chr11 988614 988862 -147794610 - MSTD LTR MaLR -1 395 108 295 278 78 26 chr11 989430 989545 -147793927 - L2 LINE L2 -2 3311 3191 768 126 92 14 chr11 990334 990492 -147792980 - LTR7 LTR ERV1 -232 218 1 2699 35 12 23 chr11 990493 990610 -147792862 + LTR10C LTR ERV1 251 368 -223 3279 57 2 13 chr11 990610 991063 -147792409 + LTR7 LTR ERV1 1 448 -2 2699 35 12 23 chr11 991063 991290 -147792182 + LTR10C LTR ERV1 368 591 0 1010 23 0 8 chr11 991291 991424 -147792048 + Harlequin LTR ERV1 1587 1718 -5178 301 261 159 0 chr11 991424 991512 -147791960 - LTR8 LTR ERV1 -434 257 156 4732 127 33 27 chr11 991516 992336 -147791136 + Harlequin LTR ERV1 2160 2984 -3912 2885 254 9 9 chr11 992398 993157 -147790315 + Harlequin LTR ERV1 3345 5911 -738 255 208 14 14 chr11 993241 993313 -147790159 + Harlequin LTR ERV1 6578 6649 0 3000 100 163 16 chr11 993313 993865 -147789607 + LTR10E LTR ERV1 1 633 0 627 185 86 0 chr11 993866 994017 -147789455 - MLT2B2 LTR ERVL -351 164 1 1327 170 46 18 chr11 994364 994646 -147788826 - MLT1B LTR MaLR -3 387 98 1054 158 0 0 chr11 994648 994813 -147788659 - FRAM SINE Alu 0 166 2 922 106 194 12 chr11 994814 994984 -147788488 - MSTA LTR MaLR 0 428 228 1013 133 46 87 chr11 994985 995180 -147788292 + THE1C LTR MaLR 178 375 0 1871 293 87 15 chr11 995237 995358 -147788114 + HERV16 LTR ERVL 1585 1696 -3300 2081 159 34 3 chr11 995358 995736 -147787736 + MLT1B LTR MaLR 1 390 0 1871 293 87 15 chr11 995736 996335 -147787137 + HERV16 LTR ERVL 1696 2357 -2639 1091 213 17 0 chr11 996374 996602 -147786870 + MLT2B1 LTR ERVL 1 232 -288 1232 119 5 5 chr11 996602 996787 -147786685 - MSTB1 LTR MaLR 0 432 248 704 109 0 27 chr11 998984 999094 -147784378 + U6 snRNA snRNA 1 107 0 8323 116 10 9 chr11 999094 1001261 -147782211 + L1PA11 LINE L1 3979 6153 -21 2920 150 75 25 chr11 1001267 1001703 -147781769 - Tigger3b DNA MER2_type -2440 588 116 2750 99 0 0 chr11 1001703 1002078 -147781394 + THE1C LTR MaLR 1 375 0 2920 150 75 25 chr11 1002078 1002201 -147781271 - Tigger3b DNA MER2_type -2912 116 1 7226 180 69 20 chr11 1002201 1003296 -147780176 + HERV16 LTR ERVL 2185 3372 -2392 1966 135 50 19 chr11 1003296 1003660 -147779812 - THE1C LTR MaLR 0 375 1 7226 180 69 20 chr11 1003660 1004033 -147779439 + HERV16 LTR ERVL 3372 3725 -2039 247 279 0 0 chr11 1004635 1004696 -147778776 + MER89 LTR ERV1 2 62 -497 353 271 92 28 chr11 1004704 1004922 -147778550 + MER89 LTR ERV1 182 413 -146 2383 83 0 3 chr11 1004949 1005249 -147778223 - AluY SINE Alu -12 299 1 5990 201 28 33 chr11 1005268 1005728 -147777744 - L1MB7 LINE L1 -15 6169 5708 2108 126 0 3 chr11 1005728 1006041 -147777431 + AluSx SINE Alu 1 312 0 5990 201 28 33 chr11 1006041 1006107 -147777365 - L1MB7 LINE L1 -476 5708 5643 342 0 0 0 chr11 1006107 1006145 -147777327 + (CA)n Simple_repeat Simple_repeat 2 39 0 5990 201 28 33 chr11 1006145 1006759 -147776713 - L1MB7 LINE L1 -541 5643 5027 2436 106 0 0 chr11 1006759 1007071 -147776401 - AluSx SINE Alu 0 312 1 5990 201 28 33 chr11 1007071 1007270 -147776202 - L1MB7 LINE L1 -1157 5027 4828 812 80 0 0 chr11 1007270 1007382 -147776090 + HY1 scRNA scRNA 1 112 0 5990 201 28 33 chr11 1007382 1008015 -147775457 - L1MB7 LINE L1 -1356 4828 4211 1751 178 36 22 chr11 1008015 1008375 -147775097 - MLT1A1 LTR MaLR 0 365 1 5990 201 28 33 chr11 1008375 1008755 -147774717 - L1MB7 LINE L1 -1973 4211 3830 606 219 41 0 chr11 1008778 1008924 -147774548 + MER89 LTR ERV1 407 558 -1 343 280 64 0 chr11 1010140 1010265 -147773207 + L2 LINE L2 3180 3312 -1 539 286 130 0 chr11 1010731 1010916 -147772556 - MER3 DNA MER1_type 0 209 1 259 143 24 0 chr11 1011835 1011877 -147771595 + LTR7 LTR ERV1 408 450 0 1863 71 0 4 chr11 1011877 1012132 -147771340 - LTR10C LTR ERV1 -337 254 1 3610 167 47 59 chr11 1012132 1013044 -147770428 - LTR10E-int LTR ERV1 -3397 4388 953 1327 197 115 18 chr11 1013025 1013637 -147769835 - LTR10E-int LTR ERV1 -4468 3317 840 * 259 174 22 0 chr11 1013691 1013737 -147769735 - LTR10E-int LTR ERV1 -5628 1021 975 1068 227 56 65 chr11 1013848 1014385 -147769087 - LTR10E-int LTR ERV1 -6335 314 3 2145 111 28 20 chr11 1014403 1014861 -147768611 - LTR10E LTR ERV1 -43 590 72 543 73 0 12 chr11 1015523 1015605 -147767867 - LTR10E LTR ERV1 -549 84 4 244 285 118 44 chr11 1015618 1016050 -147767422 + L1M4 LINE L1 4408 4871 -1275 2178 112 3 0 chr11 1016051 1016360 -147767112 + AluSg SINE Alu 1 310 0 6566 56 17 98 chr11 1017151 1018897 -147764575 - SVA Other Other -683 1386 57 387 41 0 0 chr11 1018897 1018946 -147764526 + (GGGAGA)n Simple_repeat Simple_repeat 1 49 0 1096 223 121 36 chr11 1018967 1019018 -147764454 + MLT2B1 LTR ERVL 160 205 -315 1880 152 95 24 chr11 1019018 1019438 -147764034 + LTR7 LTR ERV1 1 450 0 1096 223 121 36 chr11 1019438 1019718 -147763754 + MLT2B1 LTR ERVL 205 519 -1 198 311 0 0 chr11 1020110 1020184 -147763288 + L2 LINE L2 1000 1073 -2241 1894 137 0 0 chr11 1020202 1020464 -147763008 - AluSx SINE Alu -10 302 41 265 217 0 0 chr11 1020468 1020514 -147762958 + MSTD LTR MaLR 224 269 -127 332 114 0 0 chr11 1020522 1020566 -147762906 - AluSx SINE Alu -259 44 1 634 224 61 0 chr11 1020577 1020724 -147762748 - MER5A DNA MER1_type -26 163 8 454 222 42 76 chr11 1020870 1021014 -147762458 - MLT1J2 LTR MaLR -292 158 20 251 234 16 31 chr11 1021403 1021467 -147762005 - MLT1I LTR MaLR 0 409 347 1021 207 138 45 chr11 1021959 1022293 -147761179 + MLT1A1 LTR MaLR 1 365 0 4127 244 62 37 chr11 1022293 1022867 -147760605 + MLT1A1-int LTR MaLR 1 559 -1176 1502 57 0 0 chr11 1022867 1023061 -147760411 + L1PA3 LINE L1 5962 6155 0 4127 244 62 37 chr11 1023061 1023685 -147759787 + MLT1A1-int LTR MaLR 559 1229 -506 524 236 0 0 chr11 1023840 1023946 -147759526 + MLT2B1 LTR ERVL 365 470 -50 465 371 36 15 chr11 1024151 1024488 -147758984 + HERVL LTR ERVL 3926 4269 -1385 2613 165 14 45 chr11 1025521 1026036 -147757436 - MLT2B3 LTR ERVL -1 553 55 612 81 0 0 chr11 1026037 1026121 -147757351 + MLT2B3 LTR ERVL 1 84 -470 1418 130 80 58 chr11 1026121 1026497 -147756975 + MSTA LTR MaLR 1 401 -27 1704 168 47 0 chr11 1026497 1026880 -147756592 - AluSx SINE Alu 0 397 1 235 175 0 0 chr11 1026881 1026921 -147756551 + MSTA LTR MaLR 389 428 0 9404 169 11 9 chr11 1026921 1028563 -147754909 + MSTB-int LTR MaLR 1 1645 -6 1990 153 112 5 chr11 1028568 1028953 -147754519 + MSTB LTR MaLR 1 426 0 344 137 0 0 chr11 1028953 1029004 -147754468 + MLT2B3 LTR ERVL 80 130 -424 791 209 133 58 chr11 1029004 1029402 -147754070 - MSTC LTR MaLR 0 428 1 6025 231 65 45 chr11 1029402 1030887 -147752585 - MSTC-int LTR MaLR 0 1735 212 2534 57 0 0 chr11 1030887 1031183 -147752289 - AluY SINE Alu -15 296 1 6025 231 65 45 chr11 1031183 1031380 -147752092 - MSTC-int LTR MaLR -1523 212 20 532 250 57 21 chr11 1031399 1031591 -147751881 - MLT1A1 LTR MaLR 0 365 167 644 197 7 82 chr11 1031594 1031774 -147751698 - MLT1A1 LTR MaLR -171 194 31 2002 113 48 14 chr11 1031774 1032065 -147751407 + AluSx SINE Alu 1 301 -11 644 197 7 82 chr11 1032065 1032094 -147751378 - MLT1A1 LTR MaLR -334 31 1 * 1720 186 32 74 chr11 1032094 1032497 -147750975 + MLT2B3 LTR ERVL 130 515 -39 2475 84 0 3 chr11 1032524 1032833 -147750639 - AluSc SINE Alu -1 308 1 18483 197 41 34 chr11 1032887 1034199 -147749273 + ERVL LTR ERVL 3 1304 -4460 3413 131 9 6 chr11 1034199 1034724 -147748748 + MER1A DNA MER1_type 1 527 0 18483 197 41 34 chr11 1034724 1036681 -147746791 + ERVL LTR ERVL 1304 3245 -2519 2061 111 3 0 chr11 1036681 1036970 -147746502 + AluSx SINE Alu 23 312 0 18483 197 41 34 chr11 1036970 1038813 -147744659 + ERVL LTR ERVL 3245 5181 -583 2470 58 0 3 chr11 1038813 1039121 -147744351 + AluY SINE Alu 1 307 -4 18483 197 41 34 chr11 1039121 1039703 -147743769 + ERVL LTR ERVL 5181 5757 -7 1065 128 20 10 chr11 1039703 1039898 -147743574 + MLT2B3 LTR ERVL 1 197 -357 269 217 0 26 chr11 1039998 1040113 -147743359 + G-rich Low_complexity Low_complexity 1 112 0 509 213 19 0 chr11 1043816 1043924 -147739548 - L1MA10 LINE L1 -2 6332 6223 1266 269 43 38 chr11 1044328 1044928 -147738544 - L1ME2 LINE L1 -311 5853 5254 303 316 26 8 chr11 1045814 1045931 -147737541 - MIR SINE MIR -98 164 46 1092 132 0 0 chr11 1046676 1046835 -147736637 - FRAM SINE Alu -17 159 1 181 264 38 0 chr11 1047934 1047987 -147735485 - L2 LINE L2 -29 3243 3189 537 256 62 17 chr11 1048609 1048785 -147734687 + MER53 DNA DNA 6 189 0 210 125 16 31 chr11 1049691 1049755 -147733717 + GA-rich Low_complexity Low_complexity 3 65 0 3844 147 165 23 chr11 1056164 1056778 -147726694 - MER4D LTR ERV1 0 903 151 1666 140 57 18 chr11 1056778 1057057 -147726415 - AluSq SINE Alu -18 295 6 3844 147 165 23 chr11 1057057 1057231 -147726241 - MER4D LTR ERV1 -752 151 3 277 250 75 67 chr11 1059908 1060028 -147723444 + MIR SINE MIR 23 143 -65 234 237 17 0 chr11 1066657 1066716 -147716756 - MER81 DNA DNA -2 112 53 180 219 49 0 chr11 1068923 1068964 -147714508 - L2 LINE L2 -2 3311 3269 205 241 24 48 chr11 1070420 1070503 -147712969 - MIR SINE MIR -86 122 42 957 177 6 0 chr11 1070522 1070686 -147712786 - AluJb SINE Alu -8 304 140 25 31 0 0 chr11 1073299 1073331 -147710141 + GC_rich Low_complexity Low_complexity 1 32 0 922 253 139 21 chr11 1075464 1075796 -147707676 + L1MB7 LINE L1 5748 6118 -66 2238 87 0 13 chr11 1075800 1076109 -147707363 + AluY SINE Alu 7 311 0 2003 114 0 48 chr11 1077950 1078265 -147705207 + AluSx SINE Alu 1 300 -12 182 228 101 51 chr11 1079962 1080041 -147703431 - MIR SINE MIR -74 134 52 213 281 56 0 chr11 1081182 1081271 -147702201 + MIR3 SINE MIR 62 155 -53 799 216 104 78 chr11 1083034 1083418 -147700054 + MLT1C LTR MaLR 35 428 -39 657 271 140 17 chr11 1083790 1084148 -147699324 - MLT1C LTR MaLR -7 460 59 294 303 67 0 chr11 1085265 1085384 -147698088 + MIR SINE MIR 23 149 -59 209 307 183 7 chr11 1086688 1086841 -147696631 + MIR SINE MIR 13 192 -70 537 230 0 0 chr11 1087063 1087215 -147696257 + (TGG)n Simple_repeat Simple_repeat 2 153 0 278 244 0 26 chr11 1087251 1087366 -147696106 + (ATGGTG)n Simple_repeat Simple_repeat 2 113 0 605 216 0 6 chr11 1087383 1087564 -147695908 + (TGG)n Simple_repeat Simple_repeat 1 180 0 300 296 12 0 chr11 1087564 1087645 -147695827 + (ATGGTG)n Simple_repeat Simple_repeat 5 86 0 757 180 6 6 chr11 1087646 1087824 -147695648 + (TGG)n Simple_repeat Simple_repeat 3 180 0 498 192 6 34 chr11 1087870 1088208 -147695264 + (ATGGTG)n Simple_repeat Simple_repeat 1 328 0 375 169 0 56 chr11 1088235 1088377 -147695095 + (ATGGTG)n Simple_repeat Simple_repeat 1 134 0 946 130 120 29 chr11 1088388 1088596 -147694876 + THE1C LTR MaLR 1 227 -148 237 311 27 54 chr11 1088720 1088868 -147694604 + L2 LINE L2 2711 2854 -460 744 127 19 45 chr11 1088902 1089064 -147694408 + THE1C LTR MaLR 195 435 -22 906 173 0 6 chr11 1089075 1089576 -147693896 + (TGG)n Simple_repeat Simple_repeat 1 497 0 438 350 147 3 chr11 1090260 1090600 -147692872 + L2 LINE L2 2925 3313 0 370 212 6 71 chr11 1092365 1092896 -147690576 + (TG)n Simple_repeat Simple_repeat 1 496 0 199 187 0 27 chr11 1092960 1093035 -147690437 + (TG)n Simple_repeat Simple_repeat 2 74 0 323 194 0 58 chr11 1093068 1093259 -147690213 + (TG)n Simple_repeat Simple_repeat 1 180 0 202 56 19 93 chr11 1093314 1093368 -147690104 + (TG)n Simple_repeat Simple_repeat 1 50 0 762 176 7 22 chr11 1093588 1093724 -147689748 - AluJo SINE Alu -178 134 1 271 182 55 0 chr11 1093729 1093784 -147689688 - L2 LINE L2 -15 3257 3200 223 220 0 37 chr11 1093978 1094087 -147689385 + (CCCA)n Simple_repeat Simple_repeat 2 106 0 882 206 0 0 chr11 1094114 1094430 -147689042 + (TCCA)n Simple_repeat Simple_repeat 1 316 0 1773 185 15 10 chr11 1096534 1096929 -147686543 + L1 LINE L1 3709 4105 -2041 5638 120 21 15 chr11 1096932 1097007 -147686465 + L1PA16 LINE L1 4404 4477 -1689 1897 157 0 7 chr11 1097007 1097300 -147686172 + AluJb SINE Alu 1 291 -21 5638 120 21 15 chr11 1097300 1098954 -147684518 + L1PA16 LINE L1 4477 6150 -16 214 274 32 0 chr11 1099307 1099369 -147684103 + L2 LINE L2 3195 3258 -14 198 71 0 0 chr11 1099372 1099400 -147684072 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 184 232 36 0 chr11 1100249 1100305 -147683167 - L3 LINE CR1 -932 645 588 2157 109 3 0 chr11 1100320 1100613 -147682859 - AluSq SINE Alu -19 294 1 265 232 66 60 chr11 1100661 1100812 -147682660 - L1MC5 LINE L1 -933 7028 6877 405 0 0 0 chr11 1101001 1101046 -147682426 + (CA)n Simple_repeat Simple_repeat 2 46 0 487 289 58 0 chr11 1101091 1101299 -147682173 - L1MC5 LINE L1 -2004 5804 5585 826 261 46 25 chr11 1101303 1101587 -147681885 - L1MC5 LINE L1 -2264 5544 5255 589 327 121 32 chr11 1101588 1101934 -147681538 - L1MC5 LINE L1 -893 5253 4877 284 333 23 11 chr11 1103132 1103306 -147680166 + (CGGGG)n Simple_repeat Simple_repeat 2 177 0 327 85 0 0 chr11 1103341 1103388 -147680084 + (CGGGGG)n Simple_repeat Simple_repeat 4 50 0 218 260 16 31 chr11 1103405 1103532 -147679940 + (CGGGG)n Simple_repeat Simple_repeat 5 129 0 34 55 0 0 chr11 1103571 1103626 -147679846 + GC_rich Low_complexity Low_complexity 1 55 0 33 94 0 0 chr11 1103849 1103945 -147679527 + GC_rich Low_complexity Low_complexity 1 96 0 1721 149 30 7 chr11 1109766 1110062 -147673410 - MER1B DNA MER1_type 0 339 37 391 395 60 10 chr11 1111310 1111620 -147671852 + L1MC4a LINE L1 4711 5043 -1103 2347 81 3 0 chr11 1111717 1112014 -147671458 + AluSp SINE Alu 1 298 -15 353 351 162 16 chr11 1112073 1112264 -147671208 + L1MC4a LINE L1 5255 5473 -2335 546 295 153 3 chr11 1112272 1112560 -147670912 + L1MC4a LINE L1 5532 5862 -1946 739 209 0 0 chr11 1112560 1112694 -147670778 - FLAM_C SINE Alu -8 135 2 463 320 112 44 chr11 1112698 1113082 -147670390 + L1MC4a LINE L1 5858 6267 -1541 5169 181 42 39 chr11 1113258 1113726 -147669746 + L1PA16 LINE L1 3850 4315 -1851 2326 71 3 3 chr11 1113726 1114022 -147669450 - AluY SINE Alu -15 296 1 5169 181 42 39 chr11 1114022 1114683 -147668789 + L1PA16 LINE L1 4315 4972 -1194 1671 116 167 0 chr11 1114683 1114941 -147668531 + AluSq SINE Alu 1 301 -2 5169 181 42 39 chr11 1114941 1115265 -147668207 + L1PA16 LINE L1 4972 5293 -873 2414 49 0 55 chr11 1115265 1115591 -147667881 + AluY SINE Alu 1 308 -3 5169 181 42 39 chr11 1115591 1116419 -147667053 + L1PA16 LINE L1 5293 6161 -5 824 300 79 75 chr11 1116496 1117259 -147666213 + L1MC5 LINE L1 6555 7339 -622 483 33 0 0 chr11 1117259 1117320 -147666152 + (TGGA)n Simple_repeat Simple_repeat 1 61 0 824 300 79 75 chr11 1117320 1117548 -147665924 + L1MC5 LINE L1 7339 7564 -397 258 32 0 0 chr11 1119109 1119140 -147664332 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 379 335 12 12 chr11 1120353 1120523 -147662949 + (TGGA)n Simple_repeat Simple_repeat 2 171 0 186 43 0 0 chr11 1122223 1122246 -147661226 + (CTGGGG)n Simple_repeat Simple_repeat 6 28 0 32 67 0 0 chr11 1122944 1123004 -147660468 + AT_rich Low_complexity Low_complexity 1 60 0 689 148 9 0 chr11 1123779 1123887 -147659585 - FRAM SINE Alu -6 170 62 243 246 35 0 chr11 1124133 1124190 -147659282 - MIR SINE MIR -86 122 64 301 250 27 0 chr11 1124827 1124916 -147658556 - MIR3 SINE MIR -51 157 63 265 284 27 0 chr11 1125393 1125467 -147658005 + MIR SINE MIR 96 171 -91 234 258 65 0 chr11 1126624 1126686 -147656786 + MIR SINE MIR 111 176 -86 1940 131 0 3 chr11 1126772 1127055 -147656417 - AluJo SINE Alu -13 299 18 1245 278 120 48 chr11 1127076 1127889 -147655583 - L1ME1 LINE L1 -5 6161 5276 2043 111 3 19 chr11 1127889 1128196 -147655276 - AluSg SINE Alu -8 302 1 1245 278 120 48 chr11 1128196 1128295 -147655177 - L1ME1 LINE L1 -890 5276 5186 2254 56 45 0 chr11 1128299 1128585 -147654887 - AluY SINE Alu -12 299 1 1091 174 10 0 chr11 1128597 1128793 -147654679 - AluJo SINE Alu -21 291 94 2515 172 61 33 chr11 1128793 1129368 -147654104 - LTR59 LTR ERV1 -6 591 1 309 155 0 0 chr11 1129368 1129426 -147654046 - AluJo SINE Alu -205 97 40 778 252 91 7 chr11 1129426 1129712 -147653760 - L1ME1 LINE L1 -952 5194 4885 495 269 0 0 chr11 1130186 1130506 -147652966 + (TG)n Simple_repeat Simple_repeat 1 320 0 384 283 3 0 chr11 1130553 1130873 -147652599 + (TG)n Simple_repeat Simple_repeat 1 321 0 446 247 6 0 chr11 1130888 1131066 -147652406 + (TG)n Simple_repeat Simple_repeat 1 179 0 181 367 20 10 chr11 1132104 1132202 -147651270 + L2 LINE L2 3150 3248 -24 239 186 314 0 chr11 1133504 1133590 -147649882 - MIR SINE MIR -119 143 31 1072 290 51 0 chr11 1133619 1133991 -147649481 - L1MB7 LINE L1 -18 6166 5776 307 318 99 13 chr11 1134020 1134171 -147649301 + L1MEc LINE L1 2270 2433 -3963 2059 131 68 37 chr11 1134275 1134627 -147648845 + THE1B LTR MaLR 1 363 -1 403 362 69 20 chr11 1134701 1134947 -147648525 + L1MEc LINE L1 2659 2916 -3299 1913 150 0 7 chr11 1135314 1135614 -147647858 - AluSx SINE Alu -14 298 1 318 228 79 50 chr11 1136137 1136238 -147647234 + L1MEc LINE L1 3754 3857 -2358 785 142 45 52 chr11 1136242 1136376 -147647096 + FLAM_C SINE Alu 1 133 0 242 269 84 34 chr11 1136398 1136517 -147646955 + L1MC4 LINE L1 7006 7130 -912 1001 286 74 70 chr11 1136580 1136951 -147646521 + L1MC4 LINE L1 7269 7637 -405 2288 126 5 27 chr11 1136951 1137323 -147646149 - THE1B LTR MaLR 0 364 1 11502 86 5 0 chr11 1137323 1138896 -147644576 - THE1B-int LTR MaLR 0 1580 1 2471 102 5 30 chr11 1138896 1139269 -147644203 - THE1B LTR MaLR 0 364 1 1001 286 74 70 chr11 1139269 1139650 -147643822 + L1MC4 LINE L1 7636 8026 -16 309 250 188 0 chr11 1139842 1139970 -147643502 - L1ME4a LINE L1 -3 6118 5967 3576 126 2 0 chr11 1140117 1140641 -147642831 + MER1A DNA MER1_type 1 525 -2 369 259 12 0 chr11 1140666 1140751 -147642721 + MIR SINE MIR 112 197 -65 225 94 0 0 chr11 1140812 1140844 -147642628 + (TG)n Simple_repeat Simple_repeat 1 32 0 481 331 68 11 chr11 1140975 1141241 -147642231 - L1ME4a LINE L1 -303 5818 5538 367 351 4 30 chr11 1141671 1141902 -147641570 - L2 LINE L2 -280 3033 2809 4363 279 58 40 chr11 1141923 1142779 -147640693 - L1MC2 LINE L1 -1 7807 6967 2243 122 6 3 chr11 1142779 1143090 -147640382 - AluSx SINE Alu 0 312 1 4363 279 58 40 chr11 1143090 1144142 -147639330 - L1MC2 LINE L1 -841 6967 5885 * 9452 193 39 17 chr11 1144138 1145173 -147638299 - L1MB2 LINE L1 -2 6169 5158 2093 135 133 3 chr11 1145173 1145550 -147637922 - MSTB LTR MaLR 0 426 1 9452 193 39 17 chr11 1145550 1147603 -147635869 - L1MB2 LINE L1 -1013 5158 3013 * 18143 128 79 12 chr11 1147599 1149309 -147634163 + L1MA3 LINE L1 10 1604 -5961 2248 108 30 0 chr11 1149309 1149483 -147633989 - AluSp SINE Alu -8 305 117 243 0 0 0 chr11 1149483 1149510 -147633962 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2248 108 30 0 chr11 1149510 1149631 -147633841 - AluSp SINE Alu -196 117 1 18143 128 79 12 chr11 1149631 1150988 -147632484 + L1MA3 LINE L1 1604 3283 -4282 * 28604 110 15 23 chr11 1150977 1154779 -147628693 - L1PA8 LINE L1 -7 6480 2739 2395 97 0 3 chr11 1154779 1155088 -147628384 + AluY SINE Alu 1 308 -3 28604 110 15 23 chr11 1155088 1157799 -147625673 - L1PA8 LINE L1 -3748 2739 6 2136 170 150 33 chr11 1157802 1158786 -147624686 + L1MA3 LINE L1 3258 4395 -3170 343 71 18 0 chr11 1158784 1158840 -147624632 - L1P LINE L1 -1642 4504 4448 * 6284 52 1 1 chr11 1158836 1159639 -147623833 + L1PA7 LINE L1 5330 6132 -22 * 12269 152 20 11 chr11 1159630 1162019 -147621453 + L1MA3 LINE L1 4371 6737 -987 2518 26 0 3 chr11 1162019 1162329 -147621143 + L1PA4 LINE L1 5847 6155 0 12269 152 20 11 chr11 1162329 1163099 -147620373 + L1MA3 LINE L1 6737 7567 -157 1890 163 7 3 chr11 1163099 1163399 -147620073 + AluSx SINE Alu 1 301 -11 12269 152 20 11 chr11 1163399 1163559 -147619913 + L1MA3 LINE L1 7567 7724 0 2039 257 38 36 chr11 1163576 1163682 -147619790 - L1M4 LINE L1 -3137 3009 2905 1082 130 12 0 chr11 1163682 1163851 -147619621 - L1PA10 LINE L1 0 6168 5998 2039 257 38 36 chr11 1163851 1164612 -147618860 - L1M4 LINE L1 -3241 2905 2140 561 202 0 28 chr11 1164595 1164741 -147618731 + L1M1 LINE L1 5588 5724 -499 * 599 237 149 0 chr11 1164738 1164932 -147618540 - L1M4 LINE L1 -1029 5117 4895 843 274 68 12 chr11 1164949 1165584 -147617888 - L1MC4a LINE L1 -585 5657 5261 290 353 35 0 chr11 1165603 1165864 -147617608 - L1MC4a LINE L1 -914 5232 4963 333 279 141 25 chr11 1166086 1166369 -147617103 - L2 LINE L2 -789 2525 2210 1904 149 0 44 chr11 1168616 1168937 -147614535 + AluJo SINE Alu 4 310 -2 1801 160 3 30 chr11 1168945 1169245 -147614227 + AluJo SINE Alu 5 296 -16 223 298 11 11 chr11 1169499 1169593 -147613879 + L2 LINE L2 2911 3004 -309 277 356 40 6 chr11 1171037 1171211 -147612261 + MLT1J LTR MaLR 22 201 -310 2422 40 18 0 chr11 1173179 1173456 -147610016 + AluY SINE Alu 5 286 -25 1275 214 50 15 chr11 1173652 1174000 -147609472 - L1PA16 LINE L1 -1 6165 5808 297 269 66 7 chr11 1174790 1174930 -147608542 + MIR SINE MIR 39 188 -68 307 163 0 0 chr11 1175313 1175362 -147608110 + MER58A DNA MER1_type 40 88 -19 977 198 0 0 chr11 1178099 1178289 -147605183 + AluJb SINE Alu 137 312 0 308 253 147 7 chr11 1178423 1178573 -147604899 + MLT1D LTR MaLR 45 215 -290 829 193 86 6 chr11 1179675 1179881 -147603591 - L1MB3 LINE L1 0 6183 5974 2254 90 0 37 chr11 1181802 1182125 -147601347 - AluSx SINE Alu -1 311 1 180 0 0 0 chr11 1182377 1182397 -147601075 + (T)n Simple_repeat Simple_repeat 1 20 0 644 262 63 9 chr11 1182597 1182818 -147600654 + MLT1D LTR MaLR 8 240 -265 608 303 127 17 chr11 1186028 1186431 -147597041 - L1MB7 LINE L1 0 6184 5738 384 390 47 36 chr11 1187667 1188029 -147595443 - L1MB7 LINE L1 -1167 4979 4614 304 272 76 0 chr11 1188605 1188697 -147594775 - L1MB7 LINE L1 -2322 3824 3726 255 347 8 8 chr11 1189148 1189269 -147594203 + (TG)n Simple_repeat Simple_repeat 1 121 0 365 331 11 22 chr11 1189319 1189500 -147593972 + (TG)n Simple_repeat Simple_repeat 2 180 0 188 326 264 4 chr11 1190425 1190686 -147592786 + L2 LINE L2 2635 2963 -351 356 354 17 17 chr11 1192098 1192276 -147591196 + (CGTG)n Simple_repeat Simple_repeat 1 178 0 268 226 0 0 chr11 1193433 1193486 -147589986 - L2 LINE L2 0 3313 3261 1029 213 16 56 chr11 1195375 1195774 -147587698 - MLT1C LTR MaLR -15 375 18 594 266 85 0 chr11 1195774 1195973 -147587499 + MER58A DNA MER1_type 1 216 -8 1751 174 9 22 chr11 1196326 1196642 -147586830 - AluJb SINE Alu 0 312 1 237 304 22 0 chr11 1196649 1196741 -147586731 - L1MC4 LINE L1 -141 7901 7808 199 205 0 0 chr11 1198906 1198945 -147584527 + L2 LINE L2 2748 2786 -528 220 399 14 14 chr11 1199603 1199746 -147583726 + (CACG)n Simple_repeat Simple_repeat 3 145 0 302 300 0 11 chr11 1200763 1200853 -147582619 + MIR SINE MIR 96 184 -78 2256 268 75 58 chr11 1201088 1201910 -147581562 - L1ME1 LINE L1 -5 6161 5354 1741 165 7 3 chr11 1201910 1202207 -147581265 - AluJo SINE Alu -14 298 1 2256 268 75 58 chr11 1202207 1204078 -147579394 - L1ME1 LINE L1 -812 5354 3452 2710 232 83 60 chr11 1204306 1205283 -147578189 - L1ME1 LINE L1 -2671 3475 2497 399 100 11 89 chr11 1205283 1205373 -147578099 - L1MA5 LINE L1 -1 6299 6217 2710 232 83 60 chr11 1205373 1205733 -147577739 - L1ME1 LINE L1 -3649 2497 2147 1966 134 0 13 chr11 1205837 1206143 -147577329 - AluSx SINE Alu -10 302 1 387 304 144 22 chr11 1206360 1206772 -147576700 - L2 LINE L2 -204 3109 2634 3415 226 49 115 chr11 1209720 1212280 -147571192 - L1ME1 LINE L1 -5 6161 3434 207 0 0 0 chr11 1212280 1212303 -147571169 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 3415 226 49 115 chr11 1212303 1212318 -147571154 - L1ME1 LINE L1 -2732 3434 3420 2252 94 0 13 chr11 1212318 1212625 -147570847 - AluSq SINE Alu -10 303 1 3415 226 49 115 chr11 1212625 1212999 -147570473 - L1ME1 LINE L1 -2746 3420 3398 1184 192 108 26 chr11 1214633 1214977 -147568495 - MLT1C LTR MaLR -88 379 8 866 247 49 45 chr11 1215013 1215236 -147568236 + MER58A DNA MER1_type 1 224 0 392 352 102 22 chr11 1215708 1216023 -147567449 + L1M4 LINE L1 2267 2606 -3540 395 308 35 0 chr11 1216082 1216225 -147567247 - MLT1G1 LTR MaLR 0 595 448 254 298 61 35 chr11 1216508 1216706 -147566766 + L1M4 LINE L1 2704 2906 -3240 2401 41 7 3 chr11 1219544 1219839 -147563633 + AluY SINE Alu 16 311 0 364 295 27 0 chr11 1220113 1220225 -147563247 - MIR SINE MIR -71 191 77 205 156 0 0 chr11 1220818 1220850 -147562622 + G-rich Low_complexity Low_complexity 2 33 0 530 205 12 187 chr11 1222698 1222864 -147560608 - L1MB5 LINE L1 -16 6155 6019 2201 239 79 14 chr11 1222893 1222921 -147560551 - L1MB3 LINE L1 0 6183 6158 2161 101 3 7 chr11 1222921 1223218 -147560254 + AluSx SINE Alu 1 296 -16 2201 239 79 14 chr11 1223218 1223751 -147559721 - L1MB3 LINE L1 -25 6158 5570 402 86 35 0 chr11 1223751 1223809 -147559663 - L1MC1 LINE L1 -2 6331 6272 2201 239 79 14 chr11 1223809 1223907 -147559565 - L1MB3 LINE L1 -613 5570 5480 272 323 114 30 chr11 1224306 1224473 -147558999 + L2 LINE L2 3119 3299 -14 822 287 42 51 chr11 1224699 1225148 -147558324 + L1M4 LINE L1 3661 4105 -2041 560 224 8 0 chr11 1225240 1225374 -147558098 - Charlie1 DNA MER1_type -4 2757 2623 * 620 218 198 0 chr11 1225358 1225560 -147557912 - Charlie1 DNA MER1_type -2519 242 1 369 369 88 17 chr11 1225654 1226460 -147557012 + L1M4 LINE L1 4308 5170 -976 275 186 29 14 chr11 1226481 1226551 -147556921 + Charlie1 DNA MER1_type 68 138 -2623 383 328 90 16 chr11 1226678 1226934 -147556538 + L1M4 LINE L1 5370 5644 -534 370 316 208 17 chr11 1227429 1227922 -147555550 + L2 LINE L2 2718 3306 -7 927 227 58 5 chr11 1228032 1228239 -147555233 - MER20 DNA MER1_type 0 219 2 200 391 40 59 chr11 1229743 1229996 -147553476 - L2 LINE L2 0 3272 3025 425 317 218 20 chr11 1230075 1230677 -147552795 - L2 LINE L2 -559 2755 2035 281 302 123 34 chr11 1232220 1232399 -147551073 - MIR SINE MIR -66 196 2 183 244 0 24 chr11 1239669 1239710 -147543762 + MIR SINE MIR 111 150 -58 360 0 0 0 chr11 1240041 1240081 -147543391 + (CTCA)n Simple_repeat Simple_repeat 2 41 0 251 317 85 75 chr11 1240083 1240389 -147543083 - L2 LINE L2 -14 3258 2950 310 316 147 11 chr11 1240440 1240617 -147542855 + MIR SINE MIR 62 262 0 2066 167 30 8 chr11 1241663 1242065 -147541407 + L1MD1 LINE L1 5832 6242 0 24 0 0 0 chr11 1242330 1242354 -147541118 + AT_rich Low_complexity Low_complexity 1 24 0 2014 138 7 0 chr11 1242364 1242669 -147540803 + AluSx SINE Alu 1 307 -5 788 265 103 0 chr11 1243063 1243267 -147540205 - MIR SINE MIR -27 235 11 629 359 84 15 chr11 1243977 1244454 -147539018 + L1MC4a LINE L1 4742 5251 -895 659 263 115 7 chr11 1244496 1244766 -147538706 + L1MC4a LINE L1 5326 5624 -2184 264 271 119 25 chr11 1245512 1245630 -147537842 + L1MC4a LINE L1 5738 5866 -1942 269 222 0 0 chr11 1246384 1246438 -147537034 + L1MC4a LINE L1 5879 5932 -1876 243 0 0 0 chr11 1247696 1247723 -147535749 + (T)n Simple_repeat Simple_repeat 1 27 0 210 244 0 0 chr11 1248130 1248171 -147535301 + (CACG)n Simple_repeat Simple_repeat 3 43 0 329 267 60 26 chr11 1249806 1249922 -147533550 + MIR SINE MIR 16 135 -73 330 263 135 23 chr11 1251943 1252076 -147531396 + MIR3 SINE MIR 33 180 -28 198 290 40 81 chr11 1252046 1252170 -147531302 + L2 LINE L2 3146 3264 -8 * 270 259 129 0 chr11 1252864 1252949 -147530523 - MIR SINE MIR -80 182 87 226 297 62 28 chr11 1253043 1253188 -147530284 + L1ME3A LINE L1 4416 4565 -1581 1058 311 30 20 chr11 1253317 1253821 -147529651 + L1ME3A LINE L1 4725 5233 -913 1825 279 100 17 chr11 1253876 1254715 -147528757 + L1ME3A LINE L1 5260 6168 -2 199 356 22 30 chr11 1255299 1255434 -147528038 - MIR3 SINE MIR -72 136 3 256 271 143 97 chr11 1261701 1262073 -147521399 - L1MC/D LINE L1 -746 5400 5209 2146 234 94 11 chr11 1262329 1263278 -147520194 + L1MB5 LINE L1 4975 5996 -178 * 6918 188 166 74 chr11 1262671 1264398 -147519074 + L1MD3 LINE L1 5367 7491 -504 562 178 16 47 chr11 1264398 1264527 -147518945 + MLT1F1 LTR MaLR 1 125 -442 6918 188 166 74 chr11 1264527 1265052 -147518420 + L1MD3 LINE L1 7491 7966 -29 1324 257 138 37 chr11 1265065 1266030 -147517442 + L1ME LINE L1 4370 5432 -730 206 227 186 72 chr11 1266232 1266329 -147517143 - MIR SINE MIR -108 154 47 21 0 0 0 chr11 1267434 1267455 -147516017 + AT_rich Low_complexity Low_complexity 1 21 0 304 162 212 50 chr11 1267459 1267558 -147515914 + L1ME4a LINE L1 5961 6075 -46 853 253 98 105 chr11 1268573 1269154 -147514318 + MLT1K LTR MaLR 2 578 -10 187 261 250 0 chr11 1270917 1271005 -147512467 - L2 LINE L2 -10 3262 3153 331 288 140 39 chr11 1271009 1271238 -147512234 + LTR16C LTR ERVL 42 293 -198 589 316 90 17 chr11 1271333 1271621 -147511851 - L2 LINE L2 -555 2759 2451 9329 184 65 40 chr11 1271953 1274331 -147509141 + L1MA5 LINE L1 1418 3734 -3114 1410 169 48 11 chr11 1274331 1274603 -147508869 - AluJb SINE Alu -30 282 1 9329 184 65 40 chr11 1274603 1275723 -147507749 + L1MA5 LINE L1 3734 5026 -1822 1431 191 38 0 chr11 1275723 1275990 -147507482 + AluJb SINE Alu 5 281 -31 9329 184 65 40 chr11 1275990 1276283 -147507189 + L1MA5 LINE L1 5026 5310 -1538 * 12252 206 40 13 chr11 1276282 1280053 -147503419 + L1MA4A LINE L1 1 4045 -2803 5270 153 72 9 chr11 1280049 1281967 -147501505 + L1MA4A LINE L1 4959 7005 0 * 1097 202 0 0 chr11 1281976 1282179 -147501293 + AluJo SINE Alu 27 229 -83 43056 54 4 9 chr11 1282180 1288361 -147495111 + L1PA5 LINE L1 2 6149 -5 664 175 0 14 chr11 1288396 1288539 -147494933 + L1MA5 LINE L1 5302 5442 -1406 1036 257 13 13 chr11 1288539 1288765 -147494707 - MER8 DNA MER2_type 0 239 14 3267 164 83 6 chr11 1288765 1289851 -147493621 + L1MA5 LINE L1 5449 6602 -400 937 127 24 24 chr11 1289851 1290012 -147493460 + L1MA5 LINE L1 6838 7002 0 1192 197 86 37 chr11 1290012 1290328 -147493144 + L1MB3 LINE L1 3980 4324 -1822 2434 85 0 3 chr11 1290328 1290635 -147492837 - AluY SINE Alu -5 306 1 1192 197 86 37 chr11 1290635 1290705 -147492767 + L1MB3 LINE L1 4324 4389 -1757 307 333 16 32 chr11 1290723 1290849 -147492623 + L1MA9 LINE L1 2154 2277 -5289 2782 267 42 24 chr11 1290851 1292055 -147491417 + L1MA9 LINE L1 2096 3404 -4162 5038 186 53 67 chr11 1292063 1294490 -147488982 + L1MA9 LINE L1 5006 7149 -582 1699 179 3 7 chr11 1294490 1294786 -147488686 + AluJo SINE Alu 6 300 -12 5038 186 53 67 chr11 1294786 1295361 -147488111 + L1MA9 LINE L1 7149 7731 0 3055 193 46 102 chr11 1295357 1295709 -147487763 + L1MB3 LINE L1 4389 4759 -1421 * 1517 221 10 0 chr11 1295709 1296003 -147487469 + AluJb SINE Alu 1 297 -15 3055 193 46 102 chr11 1296003 1296668 -147486804 + L1MB3 LINE L1 4759 5329 -851 2285 79 24 0 chr11 1296668 1296958 -147486514 + AluY SINE Alu 1 297 -14 3055 193 46 102 chr11 1296958 1297093 -147486379 + L1MB3 LINE L1 5329 5470 -710 809 225 6 50 chr11 1297093 1297275 -147486197 + AluJb SINE Alu 116 289 -23 3803 168 23 12 chr11 1297283 1297975 -147485497 + L1MB3 LINE L1 5480 6179 -4 2022 185 14 24 chr11 1297995 1298690 -147484782 + L1M1 LINE L1 5029 5677 -625 4470 142 13 38 chr11 1298697 1299210 -147484262 + L1MC1 LINE L1 5586 6075 -258 2034 110 190 19 chr11 1299210 1299574 -147483898 - MSTA LTR MaLR -2 426 1 4470 142 13 38 chr11 1299574 1299826 -147483646 + L1MC1 LINE L1 6075 6332 -1 1272 226 51 17 chr11 1299831 1300410 -147483062 + L1MC4a LINE L1 2213 2810 -3572 * 9286 193 68 30 chr11 1300408 1300986 -147482486 + L1MA9 LINE L1 3127 3681 -2867 5611 115 21 53 chr11 1300986 1301259 -147482213 + L1PA16 LINE L1 5151 5431 -735 2212 121 0 3 chr11 1301259 1301613 -147481859 + AluSx SINE Alu 1 312 0 5611 115 21 53 chr11 1301613 1302021 -147481451 + L1PA16 LINE L1 5431 5791 -375 2400 86 3 0 chr11 1302021 1302325 -147481147 + AluSp SINE Alu 1 305 -8 5611 115 21 53 chr11 1302325 1302684 -147480788 + L1PA16 LINE L1 5791 6160 -6 9286 193 68 30 chr11 1302684 1304117 -147479355 + L1MA9 LINE L1 3681 5058 -1490 1332 118 81 5 chr11 1304117 1304328 -147479144 - MER30 DNA MER1_type -3 227 1 9286 193 68 30 chr11 1304328 1305527 -147477945 + L1MA9 LINE L1 5058 6466 -82 26 0 0 0 chr11 1305547 1305573 -147477899 + AT_rich Low_complexity Low_complexity 1 26 0 7908 219 53 47 chr11 1305589 1308115 -147475357 + L1MC4a LINE L1 2811 5351 -1031 363 132 0 0 chr11 1308110 1308163 -147475309 + L1MB5 LINE L1 6084 6136 -38 * 1207 251 126 10 chr11 1308444 1308858 -147474614 + L1MC4a LINE L1 5964 6425 -1619 2133 230 61 96 chr11 1309249 1310137 -147473335 + L1M4 LINE L1 649 1505 -5037 1957 134 124 0 chr11 1310142 1310441 -147473031 - MER1B DNA MER1_type -1 336 1 1287 216 37 67 chr11 1310671 1311025 -147472447 + L1M4 LINE L1 2529 2814 -3830 2051 141 27 0 chr11 1311025 1311324 -147472148 + AluSx SINE Alu 1 307 -5 1287 216 37 67 chr11 1311324 1311539 -147471933 + L1M4 LINE L1 2814 3034 -3610 299 177 0 51 chr11 1311566 1311645 -147471827 - L1M4 LINE L1 -3549 2597 2523 7395 236 40 98 chr11 1311712 1313748 -147469724 + L1MB8 LINE L1 1503 3656 -2591 1339 172 51 99 chr11 1313748 1314062 -147469410 + AluJo SINE Alu 1 299 -3 7395 236 40 98 chr11 1314062 1314827 -147468645 + L1MB8 LINE L1 3656 4464 -1783 2225 156 28 8 chr11 1314827 1315185 -147468287 - MLT1A1 LTR MaLR 0 365 1 7395 236 40 98 chr11 1315185 1315334 -147468138 + L1MB8 LINE L1 4464 4620 -1627 2526 77 0 3 chr11 1315334 1315644 -147467828 + AluY SINE Alu 1 309 -2 7395 236 40 98 chr11 1315644 1315833 -147467639 + L1MB8 LINE L1 4620 4818 -1429 2517 151 57 5 chr11 1315833 1316237 -147467235 - MSTB LTR MaLR 0 426 2 7395 236 40 98 chr11 1316237 1316421 -147467051 + L1MB8 LINE L1 4818 5011 -1236 445 167 52 0 chr11 1316421 1316517 -147466955 + L1MB3 LINE L1 6083 6183 0 7395 236 40 98 chr11 1316517 1317689 -147465783 + L1MB8 LINE L1 5011 5670 -577 2154 101 3 3 chr11 1317695 1317991 -147465481 + AluSg SINE Alu 1 296 -14 1237 172 33 25 chr11 1318004 1318248 -147465224 + L1MB8 LINE L1 5923 6168 -79 747 179 22 8 chr11 1318253 1318387 -147465085 + Tigger1 DNA MER2_type 22 157 -2261 * 1427 105 29 5 chr11 1318376 1318586 -147464886 + Tigger1 DNA MER2_type 2202 2416 -2 551 131 0 0 chr11 1318586 1318670 -147464802 + L1MB8 LINE L1 6164 6247 0 4197 222 43 20 chr11 1318675 1319326 -147464146 + L1MD1 LINE L1 5050 5746 -496 2326 163 65 45 chr11 1319326 1319817 -147463655 - MLT1D LTR MaLR 0 505 5 4197 222 43 20 chr11 1319817 1320318 -147463154 + L1MD1 LINE L1 5746 6234 -8 696 150 55 8 chr11 1320333 1320460 -147463012 + L1M4 LINE L1 5320 5452 -732 1782 265 85 38 chr11 1320595 1321356 -147462116 + L1MC4 LINE L1 7244 8040 -2 876 200 184 0 chr11 1321402 1321587 -147461885 + MER20 DNA MER1_type 1 219 0 2148 160 12 54 chr11 1321736 1322143 -147461329 + MLT1B LTR MaLR 1 390 0 628 273 41 5 chr11 1322780 1322974 -147460498 - MIR SINE MIR -49 213 13 876 294 130 48 chr11 1323212 1324058 -147459414 + L1M4 LINE L1 2703 3617 -2529 967 280 76 16 chr11 1324230 1324662 -147458810 - L1MC/D LINE L1 -2039 5769 5312 30 27 0 0 chr11 1324782 1324819 -147458653 + AT_rich Low_complexity Low_complexity 1 37 0 2575 232 32 44 chr11 1324822 1325599 -147457873 - L1ME1 LINE L1 -4 6162 5395 4502 114 25 7 chr11 1325599 1326316 -147457156 - Tigger1 DNA MER2_type -656 1762 1 726 243 11 0 chr11 1326325 1326502 -147456970 - L1ME1 LINE L1 -1778 4368 4190 1343 302 85 28 chr11 1326505 1327545 -147455927 + L1MEd LINE L1 447 1588 -4722 189 204 143 0 chr11 1328729 1328778 -147454694 - L2 LINE L2 -339 2975 2920 285 222 56 0 chr11 1333337 1333409 -147450063 - L2 LINE L2 -307 3006 2931 449 96 0 101 chr11 1336981 1337179 -147446293 + (CA)n Simple_repeat Simple_repeat 2 179 0 282 232 0 0 chr11 1337193 1337357 -147446115 + (CA)n Simple_repeat Simple_repeat 2 165 0 394 237 39 19 chr11 1337447 1337614 -147445858 + (CATA)n Simple_repeat Simple_repeat 2 153 0 231 152 30 15 chr11 1337642 1337708 -147445764 + (CA)n Simple_repeat Simple_repeat 2 68 0 367 221 182 0 chr11 1341148 1341302 -147442170 + Charlie1 DNA MER1_type 2436 2617 -144 27 0 0 0 chr11 1341617 1341644 -147441828 + AT_rich Low_complexity Low_complexity 1 27 0 189 383 11 11 chr11 1343412 1343506 -147439966 + MIR SINE MIR 77 170 -92 274 155 52 0 chr11 1344285 1344343 -147439129 + L2 LINE L2 3006 3066 -206 217 333 0 0 chr11 1344669 1344729 -147438743 - MIR SINE MIR -109 153 94 351 247 137 93 chr11 1345505 1345869 -147437603 + MLT1B LTR MaLR 1 380 -10 340 291 10 0 chr11 1348191 1348294 -147435178 - MER45C DNA AcHobo -129 824 721 544 289 0 6 chr11 1348376 1348535 -147434937 - MER45C DNA AcHobo -738 215 58 197 217 66 57 chr11 1349966 1350072 -147433400 - MIR SINE MIR -62 146 40 242 236 79 71 chr11 1351841 1351968 -147431504 + MIR SINE MIR 113 240 -22 2252 92 0 16 chr11 1352501 1352816 -147430656 + AluSg SINE Alu 1 310 0 279 351 36 0 chr11 1352926 1353037 -147430435 + L2 LINE L2 3199 3313 0 2194 81 0 39 chr11 1353359 1353698 -147429774 - AluSx SINE Alu 0 312 1 206 296 0 0 chr11 1355197 1355251 -147428221 - MIR SINE MIR -114 148 95 851 199 0 5 chr11 1356185 1356377 -147427095 + L1M3 LINE L1 5281 5467 -698 190 329 41 0 chr11 1357934 1358007 -147425465 - L2 LINE L2 -18 3295 3220 309 346 31 25 chr11 1360117 1360276 -147423196 + L2 LINE L2 3113 3272 0 4687 173 34 12 chr11 1361273 1363005 -147420467 + L1MB7 LINE L1 4424 6175 -9 308 286 93 39 chr11 1364637 1364819 -147418653 + MIR SINE MIR 3 194 -14 2251 215 122 8 chr11 1365870 1366377 -147417095 - MLT1F1 LTR MaLR -2 565 1 190 322 46 35 chr11 1366534 1366621 -147416851 + L2 LINE L2 3214 3301 -12 492 297 92 20 chr11 1367740 1367989 -147415483 + L2 LINE L2 2551 2817 -497 230 358 43 12 chr11 1369013 1369175 -147414297 - MIR3 SINE MIR -8 200 34 195 260 80 0 chr11 1370221 1370271 -147413201 + L2 LINE L2 3180 3233 -80 796 295 70 17 chr11 1370672 1370974 -147412498 - MER45C DNA AcHobo -616 337 20 25 51 0 0 chr11 1371702 1371741 -147411731 + GC_rich Low_complexity Low_complexity 1 39 0 272 323 114 30 chr11 1374223 1374390 -147409082 + L2 LINE L2 3119 3299 -14 822 287 42 51 chr11 1374616 1375065 -147408407 + L1M4 LINE L1 3661 4105 -2041 560 224 8 0 chr11 1375157 1375291 -147408181 - Charlie1 DNA MER1_type -4 2757 2623 * 620 218 198 0 chr11 1375275 1375477 -147407995 - Charlie1 DNA MER1_type -2519 242 1 369 369 88 17 chr11 1375571 1376377 -147407095 + L1M4 LINE L1 4308 5170 -976 275 186 29 14 chr11 1376398 1376468 -147407004 + Charlie1 DNA MER1_type 68 138 -2623 383 328 90 16 chr11 1376595 1376851 -147406621 + L1M4 LINE L1 5370 5644 -534 370 316 208 17 chr11 1377346 1377839 -147405633 + L2 LINE L2 2718 3306 -7 927 227 58 5 chr11 1377949 1378156 -147405316 - MER20 DNA MER1_type 0 219 2 200 391 40 59 chr11 1379660 1379913 -147403559 - L2 LINE L2 0 3272 3025 425 317 218 20 chr11 1379992 1380594 -147402878 - L2 LINE L2 -559 2755 2035 281 302 123 34 chr11 1382137 1382316 -147401156 - MIR SINE MIR -66 196 2 360 0 0 0 chr11 1389952 1389992 -147393480 + (CTCA)n Simple_repeat Simple_repeat 2 41 0 229 356 69 59 chr11 1389994 1390314 -147393158 - L2 LINE L2 -14 3258 2936 288 339 136 0 chr11 1390351 1390528 -147392944 + MIR SINE MIR 62 262 0 2156 167 30 8 chr11 1391574 1391976 -147391496 + L1MD1 LINE L1 5832 6242 0 317 332 52 57 chr11 1392011 1392240 -147391232 + L1MC4a LINE L1 4407 4634 -1512 24 0 0 0 chr11 1392241 1392265 -147391207 + AT_rich Low_complexity Low_complexity 1 24 0 2039 138 7 0 chr11 1392275 1392580 -147390892 + AluSx SINE Alu 1 307 -5 728 265 103 0 chr11 1392974 1393178 -147390294 - MIR SINE MIR -27 235 11 725 371 80 11 chr11 1393888 1394365 -147389107 + L1MC4a LINE L1 4742 5251 -895 621 263 115 7 chr11 1394407 1394677 -147388795 + L1MC4a LINE L1 5326 5624 -2184 259 271 119 25 chr11 1395423 1395541 -147387931 + L1MC4a LINE L1 5738 5866 -1942 404 308 36 56 chr11 1396295 1396490 -147386982 + L1MC4a LINE L1 5879 6069 -1739 243 0 0 0 chr11 1397603 1397630 -147385842 + (T)n Simple_repeat Simple_repeat 1 27 0 210 244 0 0 chr11 1398037 1398078 -147385394 + (CACG)n Simple_repeat Simple_repeat 3 43 0 316 284 52 17 chr11 1399713 1399829 -147383643 + MIR SINE MIR 16 135 -73 328 308 23 30 chr11 1401849 1401982 -147381490 + MIR3 SINE MIR 49 180 -28 183 375 31 10 chr11 1401980 1402076 -147381396 + L2 LINE L2 3167 3264 -8 * 265 342 114 6 chr11 1402697 1402855 -147380617 - MIR SINE MIR -1 261 87 1935 314 78 18 chr11 1402949 1404620 -147378852 + L1ME3A LINE L1 4416 6168 -2 216 356 22 30 chr11 1405204 1405339 -147378133 - MIR3 SINE MIR -72 136 3 272 285 135 89 chr11 1411605 1411977 -147371495 - L1MC/D LINE L1 -746 5400 5209 6497 209 135 53 chr11 1412233 1414301 -147369171 + L1MD3 LINE L1 4975 7486 -509 538 178 16 47 chr11 1414301 1414430 -147369042 + MLT1F1 LTR MaLR 1 125 -442 6497 209 135 53 chr11 1414430 1414955 -147368517 + L1MD3 LINE L1 7486 7966 -29 1357 272 129 29 chr11 1414968 1415932 -147367540 + L1M4 LINE L1 4370 5429 -733 181 227 186 72 chr11 1416135 1416232 -147367240 - MIR SINE MIR -108 154 47 21 0 0 0 chr11 1417336 1417357 -147366115 + AT_rich Low_complexity Low_complexity 1 21 0 274 161 169 97 chr11 1417361 1417485 -147365987 + L1ME4a LINE L1 5961 6093 -28 896 267 91 98 chr11 1418475 1419056 -147364416 + MLT1K LTR MaLR 2 578 -10 342 301 131 31 chr11 1420912 1421141 -147362331 + LTR16C LTR ERVL 42 293 -198 521 333 87 14 chr11 1421236 1421524 -147361948 - L2 LINE L2 -555 2759 2451 5414 197 70 27 chr11 1421856 1424235 -147359237 + L1M2 LINE L1 1418 3943 -2905 1441 169 48 11 chr11 1424235 1424507 -147358965 - AluJb SINE Alu -30 282 1 5414 197 70 27 chr11 1424507 1424960 -147358512 + L1M2 LINE L1 3943 4375 -2473 405 239 23 14 chr11 1425077 1425216 -147358256 - MLT1H LTR MaLR -406 143 1 189 358 47 34 chr11 1426162 1426310 -147357162 - MIR3 SINE MIR -25 183 34 258 81 0 0 chr11 1429455 1429492 -147353980 + (GA)n Simple_repeat Simple_repeat 2 38 0 188 151 170 19 chr11 1438752 1438805 -147344667 + MIR3 SINE MIR 96 156 -52 436 228 31 6 chr11 1438856 1439011 -147344461 - MIR SINE MIR -43 219 61 1521 283 63 67 chr11 1440000 1441241 -147342231 - L1M4 LINE L1 -2353 3793 2558 5672 200 41 28 chr11 1441244 1443117 -147340355 - L1ME LINE L1 -549 5600 3706 511 320 95 54 chr11 1443159 1443557 -147339915 - L1MEd LINE L1 -2811 3318 1878 1190 308 91 37 chr11 1443697 1445192 -147338280 - L1MEd LINE L1 -4573 1737 113 1354 186 48 11 chr11 1445195 1445549 -147337923 - Charlie5 DNA MER1_type -11 2601 2235 29 0 0 0 chr11 1445553 1445582 -147337890 + AT_rich Low_complexity Low_complexity 1 29 0 308 381 14 36 chr11 1446892 1447031 -147336441 + L1MC/D LINE L1 5467 5602 -2206 235 208 94 62 chr11 1448276 1448372 -147335100 + MIR SINE MIR 31 129 -133 195 350 36 44 chr11 1448473 1448610 -147334862 + MIR3 SINE MIR 2 137 -71 318 295 74 20 chr11 1450266 1450415 -147333057 - L2 LINE L2 -309 3004 2848 466 145 0 0 chr11 1451030 1451099 -147332373 + AluJ/FLAM SINE Alu 1 69 -243 1016 183 0 0 chr11 1451099 1451263 -147332209 + AluJo/FRAM SINE Alu 137 300 -12 247 279 0 15 chr11 1456502 1456570 -147326902 + G-rich Low_complexity Low_complexity 2 68 0 420 320 90 8 chr11 1456627 1456861 -147326611 - L2 LINE L2 -254 3059 2807 262 0 53 0 chr11 1456997 1457035 -147326437 + (TG)n Simple_repeat Simple_repeat 2 41 0 276 152 63 13 chr11 1457059 1457217 -147326255 + (TG)n Simple_repeat Simple_repeat 2 167 0 224 295 71 36 chr11 1457562 1457674 -147325798 - MIR SINE MIR -62 146 31 321 290 73 17 chr11 1458220 1458367 -147325105 + MIR SINE MIR 5 148 -62 1046 261 46 4 chr11 1458993 1459326 -147324146 - MLT1A2 LTR MaLR -23 444 1 320 267 103 0 chr11 1461913 1462029 -147321443 - MIR SINE MIR -120 142 15 226 333 0 0 chr11 1462429 1462486 -147320986 - MIR SINE MIR -93 169 113 821 251 5 5 chr11 1463120 1463319 -147320153 + MER58A DNA MER1_type 26 224 0 407 324 91 16 chr11 1463403 1463656 -147319816 + L1ME LINE L1 5539 5810 -311 201 132 0 0 chr11 1463921 1463959 -147319513 + (GGGA)n Simple_repeat Simple_repeat 1 38 0 214 319 0 30 chr11 1465283 1465418 -147318054 + C-rich Low_complexity Low_complexity 2 132 0 208 410 35 0 chr11 1465549 1465693 -147317779 + MIR SINE MIR 91 239 -23 207 69 0 0 chr11 1466206 1466235 -147317237 + (ATTG)n Simple_repeat Simple_repeat 3 31 0 530 229 6 0 chr11 1466488 1466667 -147316805 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 228 67 0 0 chr11 1466668 1466698 -147316774 + (TGGG)n Simple_repeat Simple_repeat 2 31 0 482 144 19 0 chr11 1466828 1466932 -147316540 - HAL1b LINE L1 -278 1070 965 417 352 20 52 chr11 1467047 1467297 -147316175 - HAL1b LINE L1 -534 814 573 1128 341 85 1 chr11 1467492 1468236 -147315236 - HAL1 LINE L1 -725 1782 977 322 188 35 0 chr11 1469888 1469973 -147313499 + CT-rich Low_complexity Low_complexity 4 91 0 325 299 75 21 chr11 1470209 1470450 -147313022 + L2 LINE L2 2634 2887 -427 190 372 35 26 chr11 1470654 1470767 -147312705 + L2 LINE L2 3180 3293 -20 254 235 10 0 chr11 1471503 1471605 -147311867 + (TGGA)n Simple_repeat Simple_repeat 2 104 0 698 208 12 0 chr11 1471621 1472054 -147311418 + (TGGA)n Simple_repeat Simple_repeat 1 438 0 389 239 17 6 chr11 1472065 1472241 -147311231 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 342 159 0 0 chr11 1472230 1472299 -147311173 + GA-rich Low_complexity Low_complexity 1 69 0 * 192 333 200 0 chr11 1472664 1472769 -147310703 - MIR SINE MIR -2 260 135 271 253 12 0 chr11 1474293 1474376 -147309096 + L2 LINE L2 2891 2974 -339 351 167 51 0 chr11 1475523 1475601 -147307871 - MER103 DNA DNA -67 99 18 234 62 0 0 chr11 1476716 1476748 -147306724 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 227 326 63 0 chr11 1476753 1476848 -147306624 - L2 LINE L2 -36 3236 3136 366 333 165 12 chr11 1477099 1477354 -147306118 - L1 LINE L1 -2310 3836 3543 297 313 144 16 chr11 1477410 1478040 -147305432 - L1 LINE L1 -2665 3481 2771 264 30 0 0 chr11 1478181 1478214 -147305258 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1514 194 110 22 chr11 1479498 1479942 -147303530 + MLT1D LTR MaLR 23 505 0 196 313 119 99 chr11 1479949 1480351 -147303121 - L2 LINE L2 -46 3226 2817 352 288 59 13 chr11 1480466 1480702 -147302770 + HAL1 LINE L1 1017 1263 -1244 697 247 142 78 chr11 1480713 1481264 -147302208 + HAL1 LINE L1 1337 1922 -585 281 233 0 22 chr11 1481690 1481780 -147301692 + (CA)n Simple_repeat Simple_repeat 1 88 0 267 289 198 0 chr11 1483179 1483300 -147300172 - L2 LINE L2 -9 3263 3119 184 268 0 0 chr11 1484364 1484405 -147299067 - L2 LINE L2 -31 3241 3201 571 340 41 16 chr11 1484927 1485242 -147298230 - MLT1J LTR MaLR -148 363 41 237 384 133 17 chr11 1485304 1485778 -147297694 - L2 LINE L2 -769 2545 2017 406 275 42 75 chr11 1485908 1486148 -147297324 + HAL1 LINE L1 6 237 -2270 395 311 40 31 chr11 1486197 1486419 -147297053 + HAL1 LINE L1 391 614 -1893 2346 237 77 46 chr11 1486426 1487420 -147296052 + HAL1 LINE L1 1392 2415 -92 330 104 0 78 chr11 1487545 1487660 -147295812 + (GGA)n Simple_repeat Simple_repeat 1 106 0 213 261 0 0 chr11 1488459 1488505 -147294967 + MIR3 SINE MIR 109 154 -54 225 441 11 0 chr11 1488596 1488775 -147294697 + MIR SINE MIR 36 216 -46 194 336 58 73 chr11 1489030 1489167 -147294305 + L2 LINE L2 3022 3156 -116 224 202 8 40 chr11 1489212 1489336 -147294136 + C-rich Low_complexity Low_complexity 1 120 0 251 210 7 91 chr11 1491727 1491870 -147291602 + (ACGTG)n Simple_repeat Simple_repeat 5 135 0 303 28 0 0 chr11 1493007 1493043 -147290429 + (CA)n Simple_repeat Simple_repeat 1 36 0 294 304 174 66 chr11 1493125 1493549 -147289923 - L2 LINE L2 -6 3307 2838 217 259 103 52 chr11 1493755 1493929 -147289543 - L2 LINE L2 -2678 636 454 205 299 73 15 chr11 1495270 1495407 -147288065 - L2 LINE L2 -213 3059 2915 1902 147 180 11 chr11 1497590 1497957 -147285515 - Tigger2a DNA MER2_type -2 432 4 210 372 75 21 chr11 1498540 1498728 -147284744 - L2 LINE L2 -14 3299 3102 245 327 154 29 chr11 1498861 1499069 -147284403 - L2 LINE L2 -509 2805 2572 689 321 11 0 chr11 1500398 1500585 -147282887 - MIR SINE MIR -28 234 46 230 238 32 16 chr11 1509238 1509301 -147274171 + L2 LINE L2 3209 3272 0 2321 51 27 10 chr11 1509710 1510004 -147273468 - AluY SINE Alu -12 299 1 198 207 0 0 chr11 1511852 1511910 -147271562 + (CA)n Simple_repeat Simple_repeat 2 59 0 317 247 6 0 chr11 1511926 1512092 -147271380 + (CA)n Simple_repeat Simple_repeat 1 167 0 239 333 21 0 chr11 1513524 1513620 -147269852 + MIR SINE MIR 84 181 -81 1771 145 35 10 chr11 1513758 1514047 -147269425 - AluJo SINE Alu -16 296 1 235 302 93 0 chr11 1515246 1515375 -147268097 + LTR48 LTR ERV1 579 719 -68 191 356 11 11 chr11 1517388 1517475 -147265997 + L2 LINE L2 2965 3051 -221 182 236 91 0 chr11 1519559 1519614 -147263858 - L2 LINE L2 -1375 1939 1880 259 121 45 15 chr11 1519904 1519970 -147263502 + (CCCGG)n Simple_repeat Simple_repeat 3 70 0 30 27 0 0 chr11 1520009 1520046 -147263426 + GC_rich Low_complexity Low_complexity 1 37 0 23 68 0 0 chr11 1520361 1520405 -147263067 + GC_rich Low_complexity Low_complexity 1 44 0 43 20 0 0 chr11 1520495 1520545 -147262927 + GC_rich Low_complexity Low_complexity 1 50 0 304 345 90 55 chr11 1521043 1521134 -147262338 + HAL1 LINE L1 1004 1090 -1417 1495 177 75 17 chr11 1521134 1521428 -147262044 + AluJb SINE Alu 2 312 0 304 345 90 55 chr11 1521428 1521626 -147261846 + HAL1 LINE L1 1090 1303 -1204 764 186 0 0 chr11 1522878 1523002 -147260470 + FLAM_A SINE Alu 1 124 -9 1758 140 0 29 chr11 1523018 1523296 -147260176 + AluJo SINE Alu 19 288 -24 24 0 0 0 chr11 1523296 1523320 -147260152 + AT_rich Low_complexity Low_complexity 1 24 0 398 304 33 76 chr11 1523334 1523518 -147259954 + L1ME4a LINE L1 5944 6119 -2 196 354 13 0 chr11 1523954 1524033 -147259439 - MIR SINE MIR -84 124 45 1976 176 43 5 chr11 1524646 1525022 -147258450 + MLT1B LTR MaLR 1 390 0 214 200 0 18 chr11 1525679 1525734 -147257738 + A-rich Low_complexity Low_complexity 2 55 0 258 105 0 0 chr11 1526294 1526332 -147257140 + (TTCA)n Simple_repeat Simple_repeat 2 39 0 218 265 15 0 chr11 1527261 1527329 -147256143 + (CGGA)n Simple_repeat Simple_repeat 2 70 0 2141 102 0 57 chr11 1529917 1530249 -147253223 - AluSq SINE Alu 0 313 1 251 170 21 0 chr11 1530440 1530487 -147252985 - MLT1A1 LTR MaLR 0 457 410 2123 109 3 0 chr11 1530488 1530814 -147252658 - AluSp SINE Alu 0 327 1 582 91 0 0 chr11 1530816 1530893 -147252579 - AluSp SINE Alu -181 132 56 954 187 88 75 chr11 1530894 1531130 -147252342 - MLT1A1 LTR MaLR -38 327 96 2050 126 3 19 chr11 1531130 1531447 -147252025 - AluSx SINE Alu 0 312 1 1513 173 47 20 chr11 1531448 1531749 -147251723 - AluJo SINE Alu -3 309 1 954 187 88 75 chr11 1531749 1531815 -147251657 - MLT1A1 LTR MaLR -268 97 19 252 294 59 12 chr11 1532186 1532271 -147251201 - MIR3 SINE MIR -11 197 109 859 175 0 0 chr11 1533229 1533372 -147250100 - FLAM_C SINE Alu 0 143 1 313 289 66 33 chr11 1533373 1533525 -147249947 + L1MC5 LINE L1 7760 7916 -45 296 283 42 17 chr11 1533615 1533735 -147249737 + (CATATA)n Simple_repeat Simple_repeat 2 124 0 1849 151 3 10 chr11 1533992 1534283 -147249189 - AluJb SINE Alu -3 309 21 576 299 97 30 chr11 1534393 1534790 -147248682 + MLT1G1 LTR MaLR 12 535 -60 2254 87 3 10 chr11 1534790 1535100 -147248372 - AluY SINE Alu -3 308 1 576 299 97 30 chr11 1535100 1535166 -147248306 + MLT1G1 LTR MaLR 535 595 0 2188 104 0 0 chr11 1535542 1535839 -147247633 - AluY SINE Alu -14 297 1 1762 157 0 41 chr11 1535841 1536159 -147247313 - AluJb SINE Alu -7 305 1 400 341 97 19 chr11 1536576 1536896 -147246576 - MLT1I LTR MaLR -23 386 42 3131 162 34 24 chr11 1537161 1537783 -147245689 + L1MC1 LINE L1 5540 6167 -166 239 302 52 10 chr11 1537963 1538059 -147245413 + L2 LINE L2 3174 3273 -40 260 326 132 21 chr11 1538572 1538716 -147244756 + MIR SINE MIR 1 160 -102 233 235 176 29 chr11 1539016 1539118 -147244354 - MIR3 SINE MIR -7 201 85 261 119 0 0 chr11 1541208 1541250 -147242222 + (T)n Simple_repeat Simple_repeat 1 42 0 39 92 0 0 chr11 1541755 1541864 -147241608 + GC_rich Low_complexity Low_complexity 1 109 0 23 0 0 0 chr11 1541941 1541964 -147241508 + GC_rich Low_complexity Low_complexity 1 23 0 31 44 0 0 chr11 1541988 1542033 -147241439 + GC_rich Low_complexity Low_complexity 1 45 0 223 179 45 15 chr11 1542238 1542305 -147241167 + (CCGGG)n Simple_repeat Simple_repeat 3 71 0 447 278 0 0 chr11 1542488 1542664 -147240808 + (CTGGGG)n Simple_repeat Simple_repeat 3 178 0 233 170 0 38 chr11 1543159 1543212 -147240260 + GA-rich Low_complexity Low_complexity 2 52 0 25 51 0 0 chr11 1543445 1543484 -147239988 + GC_rich Low_complexity Low_complexity 1 39 0 213 125 62 0 chr11 1543535 1543583 -147239889 + (CCCCG)n Simple_repeat Simple_repeat 3 53 0 226 217 9 47 chr11 1543604 1543710 -147239762 + G-rich Low_complexity Low_complexity 1 102 0 206 266 0 0 chr11 1543748 1543812 -147239660 + C-rich Low_complexity Low_complexity 1 64 0 236 212 26 62 chr11 1543837 1543950 -147239522 + (CCCGG)n Simple_repeat Simple_repeat 2 110 0 306 73 0 0 chr11 1544486 1544527 -147238945 + (CA)n Simple_repeat Simple_repeat 1 41 0 191 295 39 26 chr11 1545799 1545877 -147237595 + L3 LINE CR1 1279 1357 -220 256 275 75 0 chr11 1546038 1546158 -147237314 + MLT1J2 LTR MaLR 34 162 -288 1792 163 3 7 chr11 1546455 1546756 -147236716 + AluJb SINE Alu 13 312 0 233 304 48 32 chr11 1546939 1547064 -147236408 - MIR SINE MIR -77 185 59 416 323 38 0 chr11 1547767 1547925 -147235547 - MIR SINE MIR -14 248 85 380 250 0 0 chr11 1549408 1549492 -147233980 - MIR SINE MIR -57 151 68 181 237 51 0 chr11 1549950 1550009 -147233463 + MIR SINE MIR 86 147 -61 247 215 0 32 chr11 1550209 1550302 -147233170 + CT-rich Low_complexity Low_complexity 3 92 0 459 95 0 0 chr11 1550823 1550897 -147232575 + MIR SINE MIR 66 139 -123 2263 92 10 0 chr11 1551162 1551457 -147232015 - AluSg SINE Alu -12 298 1 521 308 66 31 chr11 1551648 1551875 -147231597 - MIR SINE MIR -7 255 21 1858 142 6 31 chr11 1552047 1552364 -147231108 - AluSx SINE Alu -3 309 1 1522 177 65 31 chr11 1553218 1553512 -147229960 + AluJo SINE Alu 1 304 -8 234 255 0 0 chr11 1553801 1553848 -147229624 + (CA)n Simple_repeat Simple_repeat 1 47 0 372 241 25 0 chr11 1554146 1554225 -147229247 - MER81 DNA DNA -17 97 17 254 300 348 12 chr11 1555681 1556504 -147226968 + L2 LINE L2 1692 2790 -524 245 329 37 0 chr11 1556601 1556683 -147226789 + L2 LINE L2 3224 3308 -5 363 326 105 44 chr11 1556856 1557200 -147226272 + L2 LINE L2 2815 3179 -93 2903 159 24 39 chr11 1557927 1558051 -147225421 - MER39B LTR ERV1 -39 614 490 2519 35 3 7 chr11 1558051 1558361 -147225111 + AluY SINE Alu 1 309 -2 2903 159 24 39 chr11 1558361 1558859 -147224613 - MER39B LTR ERV1 -163 490 1 342 254 8 31 chr11 1559488 1559618 -147223854 + C-rich Low_complexity Low_complexity 1 127 0 292 236 100 18 chr11 1562126 1562236 -147221236 + MIR SINE MIR 117 235 -27 303 251 228 40 chr11 1562564 1562990 -147220482 - L2 LINE L2 -735 2579 2074 1610 53 18 0 chr11 1563079 1563306 -147220166 - L1PA5 LINE L1 -253 5901 5671 187 223 97 39 chr11 1563568 1563671 -147219801 - L2 LINE L2 -1688 1626 1518 6772 45 6 0 chr11 1563707 1564523 -147218949 + L1PA6 LINE L1 5334 6154 0 1464 205 166 27 chr11 1564878 1565288 -147218184 - MLT1C LTR MaLR 0 467 1 209 348 211 3 chr11 1568265 1568564 -147214908 - L2 LINE L2 -670 2644 2284 211 243 27 40 chr11 1571717 1571791 -147211681 - MIR SINE MIR -116 92 20 208 244 0 0 chr11 1572908 1572953 -147210519 + (TG)n Simple_repeat Simple_repeat 1 45 0 1538 150 58 0 chr11 1576365 1576625 -147206847 - AluJb SINE Alu -21 291 17 350 256 87 23 chr11 1576705 1576877 -147206595 - MLT1K LTR MaLR -243 345 163 289 324 133 6 chr11 1577261 1577434 -147206038 + MIR SINE MIR 27 221 -41 2349 48 0 32 chr11 1578587 1578897 -147204575 + AluY SINE Alu 1 300 -11 281 156 47 55 chr11 1580217 1580345 -147203127 + (GGGTG)n Simple_repeat Simple_repeat 3 129 0 2286 76 0 20 chr11 1583107 1583408 -147200064 + AluSc SINE Alu 1 295 -14 1918 183 40 0 chr11 1584082 1584405 -147199067 - MER1B DNA MER1_type 0 337 2 261 75 0 0 chr11 1586998 1587038 -147196434 + (CCCCG)n Simple_repeat Simple_repeat 5 44 0 236 217 0 0 chr11 1587600 1587646 -147195826 + MIR SINE MIR 107 152 -110 369 216 11 0 chr11 1588149 1588237 -147195235 - MER45A DNA AcHobo -21 157 69 267 217 17 0 chr11 1590121 1590181 -147193291 - MIR SINE MIR -62 146 86 181 171 98 0 chr11 1590628 1590669 -147192803 - MIR SINE MIR -92 116 72 1888 144 0 20 chr11 1591847 1592145 -147191327 + AluJo SINE Alu 1 292 -20 668 204 0 29 chr11 1592735 1592872 -147190600 + FLAM_C SINE Alu 1 133 0 2323 64 43 0 chr11 1592882 1593163 -147190309 + AluY SINE Alu 3 295 -16 2286 92 0 78 chr11 1593237 1593572 -147189900 + AluSq SINE Alu 2 310 -3 1259 202 47 0 chr11 1593572 1593849 -147189623 + L1MB3 LINE L1 5819 6108 -75 309 211 44 22 chr11 1595418 1595508 -147187964 + L1MB3 LINE L1 6090 6181 -2 1851 171 3 3 chr11 1595877 1596206 -147187266 + AluSx SINE Alu 9 337 0 422 232 84 80 chr11 1596362 1596599 -147186873 + MLT1D LTR MaLR 8 245 -260 234 278 0 0 chr11 1596970 1597024 -147186448 - MIR SINE MIR -113 149 96 210 71 0 0 chr11 1597122 1597150 -147186322 + (GGCTG)n Simple_repeat Simple_repeat 1 28 0 2263 108 3 0 chr11 1598494 1598789 -147184683 + AluSx SINE Alu 1 296 -16 352 250 23 0 chr11 1598800 1598888 -147184584 - L1ME2 LINE L1 -9 6155 6066 327 175 333 8 chr11 1603596 1603722 -147179750 + MER46A DNA MER2_type 1 167 -69 349 281 276 5 chr11 1609444 1609643 -147173829 - MIR SINE MIR -8 254 2 675 205 119 11 chr11 1609818 1610003 -147173469 - MER3 DNA MER1_type -4 205 1 1286 178 91 56 chr11 1611540 1611678 -147171794 - AluJo SINE Alu -6 296 164 1955 137 10 33 chr11 1611678 1611985 -147171487 - AluSx SINE Alu -12 300 1 1286 178 91 56 chr11 1611985 1612132 -147171340 - AluJo SINE Alu -138 164 1 301 234 16 70 chr11 1613425 1613553 -147169919 - L1MB8 LINE L1 -3 6175 6055 25 0 0 0 chr11 1614211 1614236 -147169236 + AT_rich Low_complexity Low_complexity 1 25 0 276 302 39 34 chr11 1617146 1617325 -147166147 + L1ME LINE L1 5556 5735 -386 451 300 137 13 chr11 1617346 1617573 -147165899 + MIR SINE MIR 5 259 -3 927 128 0 0 chr11 1618180 1618313 -147165159 - FLAM_C SINE Alu 0 133 1 238 158 0 53 chr11 1618533 1618590 -147164882 + AluSp SINE Alu 118 171 -132 313 308 8 53 chr11 1618603 1618736 -147164736 + L1ME LINE L1 5596 5722 -399 308 319 28 14 chr11 1619204 1619301 -147164171 + L1MCa LINE L1 2232 2333 -4093 2599 78 0 0 chr11 1619301 1619610 -147163862 + AluSc SINE Alu 1 309 0 308 319 28 14 chr11 1619610 1619656 -147163816 + L1MCa LINE L1 2333 2377 -4049 1422 184 141 3 chr11 1621699 1622004 -147161468 - MER7A DNA MER2_type -1 345 1 2224 58 68 4 chr11 1622033 1622311 -147161161 - AluY SINE Alu -15 296 1 1314 171 122 49 chr11 1622660 1623045 -147160427 - L1MA5 LINE L1 -5 6295 5883 638 247 97 0 chr11 1623616 1623770 -147159702 + FAM SINE Alu 1 169 -6 2513 57 6 22 chr11 1623824 1624140 -147159332 + AluY SINE Alu 1 311 0 189 206 0 0 chr11 1624794 1624828 -147158644 - MER5B DNA MER1_type -125 53 20 1791 150 61 10 chr11 1625479 1625772 -147157700 - AluJb SINE Alu -4 308 1 1513 210 93 0 chr11 1628238 1628572 -147154900 + MER47A DNA MER2_type 2 366 0 21 0 0 0 chr11 1628802 1628823 -147154649 + AT_rich Low_complexity Low_complexity 1 21 0 246 233 194 61 chr11 1628838 1629183 -147154289 + L1ME LINE L1 5256 5652 -469 1846 156 17 13 chr11 1629186 1629487 -147153985 + AluJo SINE Alu 1 302 -10 1801 174 3 0 chr11 1630277 1630564 -147152908 - AluJb SINE Alu -24 288 1 902 35 18 0 chr11 1630629 1630742 -147152730 - L1PA4 LINE L1 0 6155 6041 1890 105 81 48 chr11 1631110 1631239 -147152233 + AluSx SINE Alu 1 124 -188 212 0 36 0 chr11 1631239 1631267 -147152205 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 568 130 0 0 chr11 1631273 1631365 -147152107 + L1PA8 LINE L1 6076 6167 -5 1890 105 81 48 chr11 1631365 1631523 -147151949 + AluSx SINE Alu 128 305 -7 919 199 23 0 chr11 1631654 1631825 -147151647 + AluJo SINE Alu 120 294 -18 572 237 18 0 chr11 1631950 1632064 -147151408 + FLAM_A SINE Alu 1 116 -17 23 0 0 0 chr11 1632775 1632798 -147150674 + AT_rich Low_complexity Low_complexity 1 23 0 503 304 154 27 chr11 1633675 1634189 -147149283 + L1MC4 LINE L1 7213 7791 -251 323 250 68 104 chr11 1634298 1634386 -147149086 + L1MC5 LINE L1 7733 7823 -138 710 214 8 0 chr11 1634386 1634517 -147148955 + FLAM_A SINE Alu 1 132 -1 323 250 68 104 chr11 1634517 1634620 -147148852 + L1MC5 LINE L1 7823 7917 -44 720 218 84 6 chr11 1635804 1635983 -147147489 + L1ME2 LINE L1 5972 6164 0 2205 96 4 0 chr11 1635990 1636298 -147147174 + AluSq SINE Alu 1 309 0 1838 148 25 3 chr11 1636701 1636985 -147146487 - AluJo SINE Alu -22 290 1 1816 152 7 29 chr11 1637449 1637759 -147145713 + AluSx SINE Alu 4 306 -6 960 115 0 55 chr11 1637783 1637948 -147145524 + FRAM SINE Alu 21 176 0 2326 85 7 0 chr11 1638054 1638349 -147145123 + AluSp SINE Alu 1 297 -16 236 189 151 0 chr11 1638709 1638762 -147144710 - L1ME LINE L1 -485 5636 5576 317 261 81 27 chr11 1639029 1639140 -147144332 - MIR SINE MIR -72 190 74 2240 106 3 0 chr11 1639248 1639550 -147143922 + AluSg SINE Alu 1 303 -7 238 209 209 0 chr11 1639678 1639745 -147143727 + L2 LINE L2 3232 3312 -1 814 198 0 32 chr11 1639866 1640023 -147143449 - FRAM SINE Alu -24 152 1 1470 134 20 35 chr11 1640261 1640515 -147142957 + AluSx SINE Alu 57 306 -6 908 178 0 46 chr11 1640519 1640693 -147142779 + FRAM SINE Alu 1 166 -10 2398 86 7 0 chr11 1640794 1641096 -147142376 + AluSp SINE Alu 1 304 -9 183 290 75 32 chr11 1641206 1641299 -147142173 + MIR SINE MIR 105 201 -61 2062 132 87 3 chr11 1641408 1641741 -147141731 - MER46B DNA MER2_type 0 236 1 812 161 111 5 chr11 1641995 1642202 -147141270 + L1MA8 LINE L1 6057 6289 -2 2164 129 0 0 chr11 1642592 1642903 -147140569 + AluSx SINE Alu 1 311 -1 2068 87 30 33 chr11 1643121 1643421 -147140051 - AluSq SINE Alu -12 301 3 609 177 0 71 chr11 1643806 1643947 -147139525 - FLAM_C SINE Alu -2 131 1 2287 79 3 7 chr11 1643974 1644277 -147139195 + AluSx SINE Alu 1 302 -10 295 309 32 16 chr11 1644292 1644415 -147139057 + L2 LINE L2 3180 3304 -9 341 272 258 14 chr11 1644809 1645026 -147138446 + L2 LINE L2 3026 3295 -18 495 256 34 59 chr11 1647144 1647343 -147136129 + MIR SINE MIR 37 234 -28 216 200 0 91 chr11 1648524 1648634 -147134838 + C-rich Low_complexity Low_complexity 3 102 0 40 49 0 0 chr11 1648649 1648710 -147134762 + GC_rich Low_complexity Low_complexity 1 61 0 587 151 0 0 chr11 1649980 1650066 -147133406 + AluJb SINE Alu 40 125 -187 1248 180 85 35 chr11 1650072 1650355 -147133117 + AluJb SINE Alu 2 298 -4 2433 39 3 10 chr11 1650355 1650661 -147132811 + AluY SINE Alu 1 304 -7 228 175 0 0 chr11 1651138 1651178 -147132294 + MLT1C LTR MaLR 74 113 -354 1438 161 12 24 chr11 1651179 1651433 -147132039 + AluJo SINE Alu 43 293 -19 204 256 0 0 chr11 1651434 1651477 -147131995 - MER5B DNA MER1_type -135 43 1 200 299 90 0 chr11 1651696 1651763 -147131709 + L2 LINE L2 3170 3242 -30 300 256 80 73 chr11 1652173 1652310 -147131162 + HAL1b LINE L1 1204 1341 -7 244 330 75 41 chr11 1653120 1653193 -147130279 - L1MC5 LINE L1 -283 7678 7609 2255 71 30 7 chr11 1653193 1653490 -147129982 - AluSp SINE Alu -9 304 1 244 330 75 41 chr11 1653490 1653761 -147129711 - L1MC5 LINE L1 -352 7609 7322 231 236 28 28 chr11 1653777 1653849 -147129623 + MER5A DNA MER1_type 29 100 -89 316 312 63 35 chr11 1653957 1654290 -147129182 - L1MC4 LINE L1 -673 7369 7032 1182 173 13 9 chr11 1654401 1654627 -147128845 - AluJo SINE Alu -1 311 85 305 195 5 0 chr11 1654628 1654688 -147128784 - L1MC4 LINE L1 -1032 7010 6856 695 281 57 24 chr11 1654718 1655084 -147128388 - L1MD2 LINE L1 -92 6267 5835 432 310 144 16 chr11 1655094 1655413 -147128059 - L1MC4a LINE L1 -945 6863 6504 2046 94 0 0 chr11 1655434 1655700 -147127772 + AluSx SINE Alu 1 266 -46 511 308 113 44 chr11 1655964 1656399 -147127073 + MLT1G LTR MaLR 56 549 0 25 0 0 0 chr11 1656441 1656466 -147127006 + AT_rich Low_complexity Low_complexity 1 25 0 310 303 49 43 chr11 1656489 1656651 -147126821 - L1MD2 LINE L1 -1963 5845 5683 359 299 98 40 chr11 1659674 1659848 -147123624 - L2 LINE L2 -839 2475 2292 280 289 67 19 chr11 1659866 1659970 -147123502 - L2 LINE L2 -925 2389 2281 2268 92 0 7 chr11 1661315 1661618 -147121854 + AluSg SINE Alu 1 301 -9 216 0 0 0 chr11 1661985 1662009 -147121463 + (CCCTG)n Simple_repeat Simple_repeat 3 26 0 1768 119 83 4 chr11 1662120 1662397 -147121075 - AluSx SINE Alu -12 300 2 927 180 0 0 chr11 1662493 1662654 -147120818 + L1MA4 LINE L1 6134 6294 -6 2048 103 43 10 chr11 1662664 1662966 -147120506 + AluSx SINE Alu 1 312 0 2154 111 0 0 chr11 1664826 1665123 -147118349 + AluSc SINE Alu 1 297 -12 1591 214 38 3 chr11 1665693 1666062 -147117410 + L1MB3 LINE L1 5759 6140 -43 180 382 67 0 chr11 1667539 1667628 -147115844 + MIR SINE MIR 158 252 -10 2233 45 0 28 chr11 1667811 1668119 -147115353 + AluY SINE Alu 1 300 0 366 294 52 0 chr11 1668468 1668621 -147114851 + MER20 DNA MER1_type 57 217 -2 2048 99 0 0 chr11 1669365 1669638 -147113834 - AluSc SINE Alu 0 309 37 2222 77 11 0 chr11 1669647 1669932 -147113540 - AluSp SINE Alu -19 294 7 1762 101 4 19 chr11 1670055 1670312 -147113160 + AluSg SINE Alu 1 253 -57 270 176 0 0 chr11 1670405 1670456 -147113016 + AluSg SINE Alu 257 307 -1 2331 84 0 10 chr11 1672698 1673008 -147110464 - AluY SINE Alu -3 308 2 1429 197 24 7 chr11 1673103 1673398 -147110074 - AluJb SINE Alu -12 300 1 2303 82 3 3 chr11 1673847 1674153 -147109319 + AluSp SINE Alu 1 306 -7 215 299 39 13 chr11 1675380 1675457 -147108015 - MIR SINE MIR -166 96 18 2081 87 3 48 chr11 1675900 1676210 -147107262 + AluSg SINE Alu 1 296 -14 247 344 41 16 chr11 1676412 1676534 -147106938 - MIR3 SINE MIR -7 201 77 239 238 119 16 chr11 1678065 1678191 -147105281 - L1ME4a LINE L1 -9 6112 5974 1583 238 65 19 chr11 1678525 1679054 -147104418 + LTR26E LTR ERV1 1 622 0 243 103 0 0 chr11 1679868 1679907 -147103565 + (CATA)n Simple_repeat Simple_repeat 4 42 0 1556 176 11 0 chr11 1679907 1680168 -147103304 - AluJb SINE Alu -36 276 13 277 295 124 30 chr11 1680171 1680376 -147103096 - L1M4 LINE L1 -2849 3297 3113 2360 80 0 0 chr11 1680376 1680676 -147102796 - AluSg SINE Alu -9 301 2 277 295 124 30 chr11 1680676 1680907 -147102565 - L1M4 LINE L1 -3033 3113 2820 1971 147 0 0 chr11 1680935 1681234 -147102238 - AluJo SINE Alu -13 299 1 2192 113 0 0 chr11 1681708 1682009 -147101463 - AluSx SINE Alu -6 306 6 2540 174 36 11 chr11 1682496 1682972 -147100500 + L1MA4 LINE L1 5810 6297 -3 8751 41 2 1 chr11 1683932 1684938 -147098534 + LTR13 LTR ERVK 1 1007 0 410 323 65 46 chr11 1687034 1687821 -147095651 + L1MEd LINE L1 939 1762 -4845 2652 169 27 4 chr11 1687987 1688466 -147095006 + L1MEd LINE L1 7 496 -5930 546 91 0 0 chr11 1688471 1688548 -147094924 + (TTCC)n Simple_repeat Simple_repeat 3 79 0 1987 112 0 0 chr11 1688548 1688825 -147094647 - AluSc SINE Alu -32 277 1 945 221 4 65 chr11 1688826 1689057 -147094415 + MER21B LTR ERV1 575 791 -72 1802 181 75 14 chr11 1689099 1689514 -147093958 + L1MC1 LINE L1 5889 6328 -5 841 305 98 82 chr11 1689520 1690248 -147093224 + L1MEd LINE L1 2769 3507 -2919 26 0 0 0 chr11 1690377 1690403 -147093069 + AT_rich Low_complexity Low_complexity 1 26 0 801 193 0 0 chr11 1690403 1690538 -147092934 - AluJo SINE Alu -177 135 1 201 200 20 0 chr11 1690610 1690660 -147092812 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 2269 93 7 0 chr11 1690664 1690974 -147092498 - AluSx SINE Alu 0 312 1 2044 114 0 20 chr11 1690988 1691287 -147092185 - AluSc SINE Alu -16 293 1 2008 129 88 16 chr11 1691287 1691651 -147091821 - MSTC LTR MaLR -38 390 1 2405 257 45 14 chr11 1691742 1691938 -147091534 + L1MB5 LINE L1 5351 5539 -644 1781 176 0 7 chr11 1691938 1692239 -147091233 - AluJo SINE Alu -13 299 1 2405 257 45 14 chr11 1692239 1692264 -147091208 + L1MB5 LINE L1 5539 5562 -621 932 278 141 43 chr11 1692264 1692774 -147090698 + MER68 LTR ERV1 1 560 -2 2405 257 45 14 chr11 1692774 1693387 -147090085 + L1MB5 LINE L1 5562 5901 -282 382 102 0 0 chr11 1693411 1693470 -147090002 + L1MB2 LINE L1 6113 6171 0 413 245 93 16 chr11 1694785 1694953 -147088519 + MIR SINE MIR 8 184 -37 2247 161 68 12 chr11 1696432 1696841 -147086631 + Tigger2a DNA MER2_type 2 433 -1 379 263 177 7 chr11 1697744 1697949 -147085523 - MIR SINE MIR 0 262 23 696 150 0 9 chr11 1698883 1698996 -147084476 - AluY SINE Alu -16 295 184 1896 123 50 0 chr11 1700877 1701154 -147082318 - AluSg SINE Alu -19 291 1 2177 75 0 0 chr11 1701742 1702023 -147081449 - AluY SINE Alu -30 281 1 2496 57 0 0 chr11 1703455 1703756 -147079716 + AluY SINE Alu 1 301 -10 617 209 199 31 chr11 1704587 1704783 -147078689 + L1MB5 LINE L1 5928 6156 -18 1060 174 0 0 chr11 1704820 1704981 -147078491 - U1 snRNA snRNA -4 161 1 516 280 131 27 chr11 1705129 1705546 -147077926 + MER67B LTR ERV1 34 533 -128 978 176 0 0 chr11 1705546 1705742 -147077730 - FRAM SINE Alu 0 176 1 457 267 15 0 chr11 1705742 1705877 -147077595 + MER67B LTR ERV1 525 661 0 252 276 115 0 chr11 1708486 1708573 -147074899 + L1ME4a LINE L1 6022 6118 -3 210 321 94 19 chr11 1708725 1708831 -147074641 + MIR SINE MIR 124 237 -25 33 25 0 0 chr11 1708946 1708986 -147074486 + AT_rich Low_complexity Low_complexity 1 40 0 2253 72 3 0 chr11 1709665 1709993 -147073479 - AluSx SINE Alu 0 312 1 341 277 36 0 chr11 1710093 1710205 -147073267 + MER5A DNA MER1_type 36 151 -38 708 290 43 24 chr11 1711036 1711291 -147072181 + MIR SINE MIR 2 261 -1 2012 55 76 7 chr11 1711627 1711902 -147071570 - AluY SINE Alu -17 294 1 290 288 39 10 chr11 1712262 1712439 -147071033 - MIR SINE MIR -21 241 6 979 188 0 0 chr11 1714520 1714690 -147068782 + FRAM SINE Alu 1 166 -10 2367 90 0 0 chr11 1714741 1715051 -147068421 + AluSx SINE Alu 1 310 -2 850 158 0 0 chr11 1715535 1715668 -147067804 + AluSq/x SINE Alu 1 133 -179 811 118 77 29 chr11 1715872 1716042 -147067430 + MLT1C LTR MaLR 1 178 -289 836 175 7 13 chr11 1716042 1716223 -147067249 + FRAM SINE Alu 1 173 0 26 0 0 27 chr11 1716226 1716249 -147067223 + AT_rich Low_complexity Low_complexity 1 24 -12 2172 84 7 0 chr11 1716249 1716536 -147066936 - AluSp SINE Alu -24 289 1 26 0 0 27 chr11 1716536 1716549 -147066923 + AT_rich Low_complexity Low_complexity 24 36 0 1342 174 89 0 chr11 1716552 1716823 -147066649 + MLT1C LTR MaLR 170 388 -2 1338 215 95 31 chr11 1717357 1717436 -147066036 + MLT1C LTR MaLR 1 74 -393 1999 147 0 3 chr11 1717436 1717749 -147065723 - AluJb SINE Alu 0 312 1 1338 215 95 31 chr11 1717749 1718059 -147065413 + MLT1C LTR MaLR 74 415 -52 2027 116 0 38 chr11 1718117 1718437 -147065035 - AluSx SINE Alu -4 308 1 410 113 16 0 chr11 1719649 1719711 -147063761 + AluJb SINE Alu 167 229 -83 3518 79 2 4 chr11 1719714 1720183 -147063289 + THE1A-int LTR MaLR 1113 1580 0 1440 126 13 4 chr11 1720183 1720413 -147063059 + THE1A LTR MaLR 1 232 -123 5073 94 35 0 chr11 1720413 1721136 -147062336 - THE1A-int LTR MaLR -830 750 3 1012 70 0 0 chr11 1721137 1721265 -147062207 - THE1A LTR MaLR 0 355 228 683 66 0 0 chr11 1721265 1721356 -147062116 - AluSp/q SINE Alu -8 305 215 1350 132 21 13 chr11 1721356 1721591 -147061881 - THE1A LTR MaLR -118 237 1 4207 181 21 38 chr11 1721591 1721670 -147061802 - L1P LINE L1 -744 5402 5323 2049 118 7 0 chr11 1721670 1721958 -147061514 - AluSc SINE Alu -19 290 1 4207 181 21 38 chr11 1721958 1722674 -147060798 - L1P LINE L1 -823 5323 4597 1757 155 9 25 chr11 1722674 1722990 -147060482 - AluJb SINE Alu -1 311 1 4207 181 21 38 chr11 1722990 1723066 -147060406 - L1P LINE L1 -1549 4597 4521 2131 103 0 0 chr11 1723066 1723373 -147060099 + AluSp SINE Alu 1 307 0 4207 181 21 38 chr11 1723373 1723520 -147059952 - L1P LINE L1 -1625 4521 4398 186 43 0 0 chr11 1723522 1723545 -147059927 + (T)n Simple_repeat Simple_repeat 1 23 0 1030 169 34 0 chr11 1723582 1723759 -147059713 - AluSg/x SINE Alu -1 311 129 1666 68 0 0 chr11 1723759 1723964 -147059508 - AluSq SINE Alu -108 205 1 248 333 0 0 chr11 1724716 1724827 -147058645 - L1M4 LINE L1 -3600 2546 2436 765 234 234 0 chr11 1724837 1725058 -147058414 - MER82 DNA MER2_type -1 652 368 228 35 0 0 chr11 1725058 1725087 -147058385 + (TG)n Simple_repeat Simple_repeat 1 29 0 765 234 234 0 chr11 1725087 1725109 -147058363 - MER82 DNA MER2_type -285 368 352 762 185 31 25 chr11 1725112 1725274 -147058198 + FRAM SINE Alu 1 162 -14 2073 94 14 0 chr11 1725297 1725583 -147057889 + AluSp SINE Alu 1 290 -23 1591 163 61 3 chr11 1725591 1725885 -147057587 + AluSx SINE Alu 2 312 0 3174 214 22 27 chr11 1726012 1727045 -147056427 + L1P3 LINE L1 981 2000 -4461 6033 85 2 0 chr11 1727145 1728001 -147055471 - L1P LINE L1 -1542 4604 3747 2436 11 0 0 chr11 1728000 1728419 -147055053 + L1P1 LINE L1 5133 5551 -604 * 412 172 188 39 chr11 1729409 1729537 -147053935 - L2 LINE L2 0 3313 3167 395 209 17 52 chr11 1729821 1729936 -147053536 - L1MD3 LINE L1 -43 7952 7842 573 211 17 18 chr11 1729936 1730066 -147053406 - MER20 DNA MER1_type -57 162 48 435 289 106 83 chr11 1730658 1731120 -147052352 + L1MC/D LINE L1 4948 5431 -767 286 330 59 77 chr11 1731141 1731414 -147052058 - MLT1I LTR MaLR -13 396 129 2487 229 107 27 chr11 1731568 1731926 -147051546 - L1 LINE L1 -3739 3826 3498 366 91 0 0 chr11 1731926 1731981 -147051491 + (TG)n Simple_repeat Simple_repeat 2 56 0 2487 229 107 27 chr11 1731981 1732786 -147050686 - L1 LINE L1 -4067 3498 2582 1073 62 0 0 chr11 1732897 1733041 -147050431 + AluY SINE Alu 156 299 -12 271 188 39 47 chr11 1734404 1734532 -147048940 + (GGGTG)n Simple_repeat Simple_repeat 3 129 0 2263 76 0 20 chr11 1737354 1737655 -147045817 + AluSc SINE Alu 1 295 -14 1892 183 40 0 chr11 1738330 1738653 -147044819 - MER1B DNA MER1_type 0 337 2 261 75 0 0 chr11 1741246 1741286 -147042186 + (CCCCG)n Simple_repeat Simple_repeat 5 44 0 22 0 0 0 chr11 1741584 1741606 -147041866 + GC_rich Low_complexity Low_complexity 1 22 0 236 217 0 0 chr11 1741848 1741894 -147041578 + MIR SINE MIR 107 152 -110 369 216 11 0 chr11 1742397 1742485 -147040987 - MER45A DNA AcHobo -21 157 69 267 217 17 0 chr11 1744369 1744429 -147039043 - MIR SINE MIR -62 146 86 260 185 0 0 chr11 1745127 1745181 -147038291 - L2 LINE L2 -265 3048 2995 225 363 26 0 chr11 1745319 1745432 -147038040 - L2 LINE L2 -670 2644 2529 191 355 26 0 chr11 1745542 1745618 -147037854 - L2 LINE L2 -953 2361 2284 211 243 27 40 chr11 1748773 1748847 -147034625 - MIR SINE MIR -116 92 20 208 244 0 0 chr11 1749963 1750008 -147033464 + (TG)n Simple_repeat Simple_repeat 1 45 0 1547 149 58 0 chr11 1753420 1753681 -147029791 - AluJb SINE Alu -20 292 17 350 256 87 23 chr11 1753761 1753933 -147029539 - MLT1K LTR MaLR -243 345 163 289 324 133 6 chr11 1754317 1754490 -147028982 + MIR SINE MIR 27 221 -41 1099 81 0 69 chr11 1755641 1755814 -147027658 + AluY SINE Alu 1 161 -150 256 198 10 10 chr11 1755829 1755925 -147027547 + (CA)n Simple_repeat Simple_repeat 2 97 0 239 333 21 0 chr11 1757323 1757419 -147026053 + MIR SINE MIR 84 181 -81 1771 145 35 10 chr11 1757557 1757846 -147025626 - AluJo SINE Alu -16 296 1 235 302 93 0 chr11 1759045 1759174 -147024298 + LTR48 LTR ERV1 579 719 -68 191 356 11 11 chr11 1761187 1761274 -147022198 + L2 LINE L2 2965 3051 -221 182 236 91 0 chr11 1763357 1763412 -147020060 - L2 LINE L2 -1375 1939 1880 259 121 45 15 chr11 1763702 1763768 -147019704 + (CCCGG)n Simple_repeat Simple_repeat 3 70 0 30 27 0 0 chr11 1763807 1763844 -147019628 + GC_rich Low_complexity Low_complexity 1 37 0 23 68 0 0 chr11 1764159 1764203 -147019269 + GC_rich Low_complexity Low_complexity 1 44 0 43 20 0 0 chr11 1764293 1764343 -147019129 + GC_rich Low_complexity Low_complexity 1 50 0 376 354 112 29 chr11 1764841 1764932 -147018540 + HAL1 LINE L1 1004 1086 -1421 1498 177 75 17 chr11 1764932 1765226 -147018246 + AluJb SINE Alu 2 312 0 376 354 112 29 chr11 1765226 1765411 -147018061 + HAL1 LINE L1 1086 1303 -1204 398 318 41 72 chr11 1766578 1766662 -147016810 + L1ME4a LINE L1 1040 1125 -4996 764 186 0 0 chr11 1766662 1766786 -147016686 + FLAM_A SINE Alu 1 124 -9 398 318 41 72 chr11 1766786 1766802 -147016670 + L1ME4a LINE L1 1125 1140 -4981 1758 140 0 29 chr11 1766802 1767080 -147016392 + AluJo SINE Alu 19 288 -24 398 318 41 72 chr11 1767080 1767302 -147016170 + L1ME4a LINE L1 1140 6119 -2 196 354 13 0 chr11 1767738 1767817 -147015655 - MIR SINE MIR -84 124 45 202 259 37 0 chr11 1767926 1767980 -147015492 + GA-rich Low_complexity Low_complexity 1 56 0 1976 176 43 5 chr11 1768430 1768806 -147014666 + MLT1B LTR MaLR 1 390 0 214 200 0 18 chr11 1769464 1769519 -147013953 + A-rich Low_complexity Low_complexity 2 55 0 258 105 0 0 chr11 1770079 1770117 -147013355 + (TTCA)n Simple_repeat Simple_repeat 2 39 0 218 265 15 0 chr11 1771046 1771114 -147012358 + (CGGA)n Simple_repeat Simple_repeat 2 70 0 2141 102 0 57 chr11 1773700 1774032 -147009440 - AluSq SINE Alu 0 313 1 251 170 21 0 chr11 1774223 1774270 -147009202 - MLT1A1 LTR MaLR 0 457 410 2123 109 3 0 chr11 1774271 1774597 -147008875 - AluSp SINE Alu 0 327 1 582 91 0 0 chr11 1774599 1774676 -147008796 - AluSp SINE Alu -181 132 56 674 150 33 0 chr11 1774677 1774797 -147008675 - MLT1A1 LTR MaLR -38 327 204 300 231 51 0 chr11 1774908 1774986 -147008486 + AluJ/FRAM SINE Alu 217 298 -4 2127 127 3 0 chr11 1774991 1775298 -147008174 + AluSp SINE Alu 2 309 -4 231 62 0 62 chr11 1775298 1775346 -147008126 - L1MC/D LINE L1 -478 5855 5811 262 305 169 17 chr11 1775373 1775668 -147007804 - L1MEd LINE L1 -4880 1239 900 2304 88 0 22 chr11 1775689 1776009 -147007463 - AluSq SINE Alu 0 313 1 227 277 72 0 chr11 1776131 1776214 -147007258 + L2 LINE L2 3225 3313 0 285 348 85 20 chr11 1776317 1776622 -147006850 - L1MEd LINE L1 -5581 538 214 240 195 11 46 chr11 1776631 1776718 -147006754 + CT-rich Low_complexity Low_complexity 3 86 0 943 183 9 163 chr11 1776841 1777190 -147006282 - MER82 DNA MER2_type -314 339 45 2244 97 0 25 chr11 1777299 1777618 -147005854 - AluSx SINE Alu -1 311 1 426 396 56 8 chr11 1777620 1777991 -147005481 - L1MEc LINE L1 -2946 3269 2100 1716 186 0 7 chr11 1778015 1778322 -147005150 + AluJb SINE Alu 1 305 -7 1707 119 43 61 chr11 1778358 1778703 -147004769 + THE1C LTR MaLR 1 339 -36 465 133 0 0 chr11 1778703 1778778 -147004694 + (TCCC)n Simple_repeat Simple_repeat 3 77 0 263 313 0 30 chr11 1779693 1779792 -147003680 + CT-rich Low_complexity Low_complexity 4 99 0 210 250 9 18 chr11 1779792 1779904 -147003568 + C-rich Low_complexity Low_complexity 2 112 0 990 176 0 0 chr11 1780281 1780610 -147002862 + (ATG)n Simple_repeat Simple_repeat 1 329 0 383 146 0 0 chr11 1780610 1780665 -147002807 + (TGG)n Simple_repeat Simple_repeat 3 57 0 816 196 0 0 chr11 1780665 1780844 -147002628 + (ATG)n Simple_repeat Simple_repeat 1 179 0 187 294 59 0 chr11 1780949 1781000 -147002472 + L2 LINE L2 2653 2706 -608 304 246 100 9 chr11 1781662 1781772 -147001700 + MIR SINE MIR 31 150 -58 2877 89 91 0 chr11 1781899 1782316 -147001156 + L1PA13 LINE L1 5708 6162 -1 385 181 0 36 chr11 1782351 1782434 -147001038 - L1M3 LINE L1 -469 5714 5635 1097 110 7 0 chr11 1782585 1782740 -147000732 - AluSq SINE Alu -157 156 1 282 136 153 0 chr11 1782740 1782799 -147000673 - L1MA8 LINE L1 -185 6106 6039 245 167 0 0 chr11 1782800 1782854 -147000618 - L1M3 LINE L1 -537 5646 5593 933 72 8 0 chr11 1782895 1783020 -147000452 + AluSp/q SINE Alu 188 313 0 4915 155 38 21 chr11 1783025 1783205 -147000267 - L1MA8 LINE L1 -10 6281 6105 1954 109 38 0 chr11 1783205 1783498 -146999974 - AluSx SINE Alu -4 308 5 4915 155 38 21 chr11 1783498 1784481 -146998991 - L1MA8 LINE L1 -186 6105 5106 990 146 41 120 chr11 1784474 1784709 -146998763 - L1M3 LINE L1 -576 5607 5402 * 832 156 7 22 chr11 1784709 1784844 -146998628 - FLAM_C SINE Alu 0 133 1 990 146 41 120 chr11 1784844 1784924 -146998548 - L1M3 LINE L1 -781 5402 5317 1633 141 20 0 chr11 1785663 1785918 -146997554 - AluJo SINE Alu -35 277 18 213 218 18 0 chr11 1788236 1788291 -146995181 + (CAGCC)n Simple_repeat Simple_repeat 2 57 0 756 134 0 0 chr11 1791401 1791535 -146991937 + (TGGA)n Simple_repeat Simple_repeat 1 134 0 977 134 6 0 chr11 1791550 1791722 -146991750 + (TGGA)n Simple_repeat Simple_repeat 2 174 0 287 283 0 7 chr11 1793800 1793945 -146989527 + (CA)n Simple_repeat Simple_repeat 1 144 0 198 333 42 21 chr11 1794548 1794644 -146988828 + MIR SINE MIR 47 144 -64 904 224 97 21 chr11 1794820 1795212 -146988260 + MLT1C LTR MaLR 7 466 -1 464 293 67 67 chr11 1795889 1796264 -146987208 - MER113 DNA MER1_type? -83 438 64 660 264 42 10 chr11 1796975 1797186 -146986286 + MIR SINE MIR 42 261 -1 1523 150 24 53 chr11 1798568 1798671 -146984801 + MLT1B LTR MaLR 2 106 -284 995 9 0 0 chr11 1798671 1798802 -146984670 + L1PA5 LINE L1 6028 6158 0 1523 150 24 53 chr11 1798802 1799038 -146984434 + MLT1B LTR MaLR 106 332 -58 2334 94 7 0 chr11 1800431 1800739 -146982733 + AluSg SINE Alu 1 310 0 1694 163 34 3 chr11 1801428 1801722 -146981750 + AluJo SINE Alu 1 303 -9 913 223 35 1 chr11 1804316 1804654 -146978818 + MLT1B LTR MaLR 2 379 -11 244 276 134 39 chr11 1804913 1805040 -146978432 - MIR SINE MIR -103 159 21 229 301 11 21 chr11 1807978 1808071 -146975401 + G-rich Low_complexity Low_complexity 2 93 0 287 268 143 0 chr11 1808846 1808958 -146974514 - L3 LINE CR1 -108 1469 1342 245 316 22 22 chr11 1810767 1810906 -146972566 + L1MC5 LINE L1 5723 5861 -1947 771 111 0 0 chr11 1810926 1811034 -146972438 + AluSg/x SINE Alu 203 310 0 1177 272 68 53 chr11 1811057 1811730 -146971742 + L1MC5 LINE L1 6694 7376 -585 2222 113 7 0 chr11 1812028 1812338 -146971134 + AluSx SINE Alu 1 312 0 287 252 10 29 chr11 1812350 1812453 -146971019 + L1MC5 LINE L1 7701 7801 -160 296 206 17 39 chr11 1812604 1812784 -146970688 + GA-rich Low_complexity Low_complexity 3 178 0 900 205 65 0 chr11 1813526 1813741 -146969731 + L1MC2 LINE L1 6106 6334 -10 415 360 79 9 chr11 1813742 1813970 -146969502 + L1MCa LINE L1 1402 1645 -4781 1468 51 6 0 chr11 1813976 1814152 -146969320 + AluSp SINE Alu 1 177 -136 568 40 0 0 chr11 1814152 1814227 -146969245 + AluSp SINE Alu 228 302 -11 283 191 103 0 chr11 1814554 1814622 -146968850 + MIR SINE MIR 67 141 -121 2386 99 0 0 chr11 1815152 1815464 -146968008 - AluSx SINE Alu 0 312 1 320 308 50 33 chr11 1816811 1816931 -146966541 + MIR3 SINE MIR 58 179 -29 484 276 62 50 chr11 1819466 1819824 -146963648 + MER90 LTR ERV1 227 588 -26 198 0 0 0 chr11 1820271 1820293 -146963179 + (CAGC)n Simple_repeat Simple_repeat 3 24 0 2243 98 3 0 chr11 1821983 1822279 -146961193 - AluSp SINE Alu -16 297 1 1824 115 51 10 chr11 1822289 1822585 -146960887 - AluSx SINE Alu -2 310 3 269 133 0 0 chr11 1823703 1823748 -146959724 + MIR SINE MIR 113 157 -105 496 134 41 21 chr11 1823774 1823871 -146959601 + MER4A LTR ERV1 1 99 -565 1628 125 36 20 chr11 1823871 1824208 -146959264 + MER4A LTR ERV1 262 662 -2 3508 132 173 140 chr11 1824215 1825605 -146957867 + MER4A-int LTR ERV1 1 1435 -5163 193 279 54 78 chr11 1827552 1827681 -146955791 + L2 LINE L2 3123 3248 -24 399 254 78 14 chr11 1828775 1828917 -146954555 + MLT1D LTR MaLR 1 151 -354 188 294 71 12 chr11 1829480 1829565 -146953907 + L2 LINE L2 3100 3189 -83 593 325 41 26 chr11 1830074 1830415 -146953057 - L1MB7 LINE L1 -195 5989 5644 386 174 45 39 chr11 1830536 1830691 -146952781 + (CCCTG)n Simple_repeat Simple_repeat 5 160 0 214 257 29 57 chr11 1831081 1831151 -146952321 + MIR SINE MIR 82 149 -59 216 228 52 57 chr11 1831348 1831452 -146952020 + MIR SINE MIR 25 102 -106 2181 102 0 19 chr11 1831452 1831767 -146951705 + AluSx SINE Alu 1 309 -3 216 228 52 57 chr11 1831767 1831790 -146951682 + MIR SINE MIR 102 124 -84 265 302 125 0 chr11 1833418 1833514 -146949958 - L3 LINE CR1 -489 1088 981 1045 181 0 11 chr11 1834578 1834760 -146948712 - AluJo SINE Alu -132 180 1 2145 122 0 0 chr11 1834794 1835089 -146948383 + AluSx SINE Alu 1 295 -17 1877 113 11 11 chr11 1835090 1835364 -146948108 + AluY SINE Alu 2 275 -36 915 100 0 0 chr11 1835364 1835494 -146947978 + AluY SINE Alu 173 302 -9 2396 146 15 34 chr11 1835671 1835701 -146947771 - MER57A LTR ERV1 0 403 374 186 71 0 0 chr11 1835701 1835729 -146947743 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1941 110 7 11 chr11 1835733 1836014 -146947458 - AluSq SINE Alu -33 280 1 2396 146 15 34 chr11 1836014 1836389 -146947083 - MER57A LTR ERV1 -32 371 1 2238 99 3 6 chr11 1837183 1837497 -146945975 + AluSp SINE Alu 1 313 0 2088 97 3 14 chr11 1837678 1837966 -146945506 + AluSp SINE Alu 1 285 -28 228 67 0 0 chr11 1837966 1837996 -146945476 + (TA)n Simple_repeat Simple_repeat 2 31 0 2098 115 3 13 chr11 1838071 1838376 -146945096 - AluSq SINE Alu -11 302 1 507 65 0 13 chr11 1838376 1838453 -146945019 - MER4E LTR ERV1 -676 90 15 302 225 0 0 chr11 1839415 1839486 -146943986 - MER81 DNA DNA -6 108 38 332 253 75 71 chr11 1839509 1839784 -146943688 - MLT1C LTR MaLR -12 378 110 1814 147 0 14 chr11 1839799 1839961 -146943511 - AluJb SINE Alu -19 293 135 2305 108 0 0 chr11 1839961 1840266 -146943206 - AluSq SINE Alu -8 305 1 1814 147 0 14 chr11 1840266 1840396 -146943076 - AluJb SINE Alu -177 135 5 2122 121 0 10 chr11 1840547 1840853 -146942619 + AluSq SINE Alu 1 303 -10 2344 68 7 0 chr11 1841376 1841672 -146941800 - AluSc SINE Alu -11 298 1 1288 160 88 40 chr11 1841714 1841964 -146941508 + AluJb SINE Alu 39 300 -12 2146 102 0 7 chr11 1841964 1842251 -146941221 + AluSx SINE Alu 1 287 -25 244 0 0 0 chr11 1842251 1842278 -146941194 + (CAAA)n Simple_repeat Simple_repeat 2 84 0 1111 224 154 16 chr11 1842293 1842677 -146940795 - L1MC4 LINE L1 -444 7598 7162 6127 77 48 6 chr11 1842852 1843779 -146939693 + MER4A-int LTR ERV1 1479 2450 -4148 1991 102 4 4 chr11 1843779 1844054 -146939418 + AluSg SINE Alu 19 293 -17 6127 77 48 6 chr11 1844054 1844102 -146939370 + MER4A-int LTR ERV1 2450 2495 -4103 1300 152 84 0 chr11 1844102 1844339 -146939133 - LTR8 LTR ERV1 -434 257 1 3539 133 83 52 chr11 1844342 1844979 -146938493 + MER4A-int LTR ERV1 2741 3416 -3182 2419 61 0 13 chr11 1844979 1845290 -146938182 - AluY SINE Alu -4 307 1 3539 133 83 52 chr11 1845290 1845570 -146937902 + MER4A-int LTR ERV1 3416 3686 -2912 * 16402 93 47 20 chr11 1845563 1846964 -146936508 + MER4A-int LTR ERV1 3836 5198 -1400 2394 88 0 0 chr11 1846964 1847272 -146936200 + AluSx SINE Alu 2 309 -3 16402 93 47 20 chr11 1847272 1848561 -146934911 + MER4A-int LTR ERV1 5198 6598 0 531 131 20 20 chr11 1848562 1848661 -146934811 + MER4A LTR ERV1 1 99 -565 1855 113 6 57 chr11 1848661 1848966 -146934506 + MER4A LTR ERV1 262 606 -58 2192 100 10 0 chr11 1848966 1849265 -146934207 - AluSx SINE Alu -10 302 1 1855 113 6 57 chr11 1849265 1849322 -146934150 + MER4A LTR ERV1 606 664 0 2142 116 0 3 chr11 1849407 1849708 -146933764 - AluSq SINE Alu -13 300 1 531 309 17 6 chr11 1850281 1850462 -146933010 + MER53 DNA DNA 1 183 -6 2239 80 17 3 chr11 1851451 1851750 -146931722 - AluSq SINE Alu -10 303 1 304 204 68 0 chr11 1851750 1851838 -146931634 + MER69 DNA AcHobo 2361 2454 -72 592 228 62 11 chr11 1852107 1852341 -146931131 + MLT1C LTR MaLR 72 373 -17 1132 265 73 0 chr11 1853655 1853968 -146929504 + MER58B DNA MER1_type 3 338 -3 285 307 39 39 chr11 1854139 1854266 -146929206 - MIR SINE MIR -33 229 103 631 236 56 15 chr11 1854453 1854648 -146928824 - MIR SINE MIR -45 217 15 194 239 65 76 chr11 1854841 1854933 -146928539 + L2 LINE L2 2883 2973 -299 414 57 0 0 chr11 1855185 1855238 -146928234 + (TGGA)n Simple_repeat Simple_repeat 4 56 0 1101 216 17 0 chr11 1855652 1855912 -146927560 + L1M4 LINE L1 5207 5470 -704 1276 86 0 56 chr11 1855912 1855937 -146927535 + AluY SINE Alu 118 143 -168 2366 41 3 7 chr11 1855937 1856232 -146927240 + AluY SINE Alu 17 310 -1 1276 86 0 56 chr11 1856232 1856403 -146927069 + AluY SINE Alu 143 303 -8 1170 179 20 99 chr11 1856407 1856709 -146926763 + L1M4 LINE L1 5479 5756 -418 423 261 131 8 chr11 1858991 1859121 -146924351 - MIR SINE MIR -100 162 17 187 262 0 0 chr11 1860539 1860581 -146922891 - MIR SINE MIR -63 145 104 217 325 25 0 chr11 1861020 1861100 -146922372 - MIR SINE MIR -119 143 62 830 145 6 23 chr11 1861704 1862014 -146921458 + (TCCA)n Simple_repeat Simple_repeat 1 305 0 196 318 66 60 chr11 1863727 1863878 -146919594 + MIR SINE MIR 77 228 -34 215 160 80 0 chr11 1864762 1864812 -146918660 - L2 LINE L2 -191 3081 3028 186 293 121 32 chr11 1864914 1865071 -146918401 - L2 LINE L2 -168 3104 2934 504 315 63 10 chr11 1866745 1866965 -146916507 + MIR SINE MIR 1 234 -28 524 281 65 0 chr11 1869559 1869712 -146913760 - MLT1C LTR MaLR 0 467 305 371 234 32 11 chr11 1870476 1870570 -146912902 - MIR SINE MIR -72 190 95 194 280 32 11 chr11 1872936 1873029 -146910443 - L2 LINE L2 -182 3090 2996 2428 152 67 0 chr11 1873330 1873731 -146909741 - MSTA LTR MaLR 0 428 1 2198 75 0 7 chr11 1873990 1874283 -146909189 - AluY SINE Alu -20 291 1 1144 218 36 88 chr11 1874728 1875113 -146908359 + MLT1A1 LTR MaLR 1 365 0 181 274 78 0 chr11 1875137 1875188 -146908284 - L3 LINE CR1 -12 1565 1511 272 182 55 0 chr11 1875264 1875319 -146908153 - MER117 DNA MER1_type -82 115 58 377 382 66 5 chr11 1875360 1875572 -146907900 - L3 LINE CR1 -374 1203 979 201 331 60 8 chr11 1875827 1875949 -146907523 + MIR SINE MIR 18 150 -69 1574 145 3 74 chr11 1876411 1876735 -146906737 + AluJb SINE Alu 6 306 -6 2291 65 14 0 chr11 1877066 1877357 -146906115 - AluSx SINE Alu -17 295 1 3257 227 17 26 chr11 1877528 1878468 -146905004 - L1M3 LINE L1 -704 5479 4547 3622 141 16 18 chr11 1878552 1879182 -146904290 + L1PA16 LINE L1 5460 6088 -78 398 213 0 0 chr11 1879447 1879527 -146903945 + L1PA16 LINE L1 6079 6158 -8 1091 77 6 16 chr11 1879553 1879775 -146903697 + L1HS LINE L1 5988 6180 0 313 209 58 23 chr11 1879842 1879928 -146903544 - MLT1I LTR MaLR -40 369 281 1174 228 41 59 chr11 1880091 1880360 -146903112 + MLT1A2 LTR MaLR 1 264 -110 2290 109 124 16 chr11 1880360 1880746 -146902726 + MSTA LTR MaLR 1 428 0 1174 228 41 59 chr11 1880746 1880814 -146902658 + MLT1A2 LTR MaLR 264 332 -42 1188 152 0 15 chr11 1880856 1881054 -146902418 - AluJo SINE Alu -37 275 81 2121 128 0 0 chr11 1881107 1881404 -146902068 - AluSx SINE Alu -15 297 1 528 292 87 5 chr11 1881431 1881616 -146901856 - MER3 DNA MER1_type 0 209 10 784 213 96 0 chr11 1882121 1882309 -146901163 + MSTB1 LTR MaLR 6 211 -246 1419 166 7 50 chr11 1882324 1882626 -146900846 + AluJo SINE Alu 24 312 0 883 174 63 19 chr11 1882640 1882847 -146900625 + MSTB1 LTR MaLR 217 432 0 1631 209 29 24 chr11 1883754 1884132 -146899340 + Ricksha_c DNA DNA 70 449 -1597 5026 155 34 19 chr11 1884309 1885204 -146898268 + Ricksha_c DNA DNA 454 1361 -685 2730 62 6 3 chr11 1885207 1885561 -146897911 + THE1A LTR MaLR 1 355 0 3132 161 34 58 chr11 1885561 1885925 -146897547 + Ricksha_c DNA DNA 1353 1724 -1522 1887 149 0 10 chr11 1885925 1886221 -146897251 - AluSx SINE Alu -19 293 1 3132 161 34 58 chr11 1886221 1886405 -146897067 + Ricksha_c DNA DNA 1724 1883 -1363 1821 132 39 0 chr11 1886405 1886686 -146896786 + AluSx SINE Alu 1 292 -20 3132 161 34 58 chr11 1886686 1886839 -146896633 + Ricksha_c DNA DNA 1883 2038 0 4925 220 128 20 chr11 1886841 1887966 -146895506 - L1ME1 LINE L1 -21 6145 5142 219 69 0 0 chr11 1887966 1887995 -146895477 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 4925 220 128 20 chr11 1887995 1889089 -146894383 - L1ME1 LINE L1 -1024 5142 3694 216 270 283 4 chr11 1889224 1889396 -146894076 - MIR SINE MIR -21 187 16 634 309 104 24 chr11 1889587 1890136 -146893336 + L2 LINE L2 2714 3299 -14 186 225 25 0 chr11 1890466 1890506 -146892966 + L2 LINE L2 3211 3251 -21 410 264 71 14 chr11 1890634 1890774 -146892698 + MIR SINE MIR 96 243 -19 233 255 10 0 chr11 1890807 1890905 -146892567 + (ATGGTG)n Simple_repeat Simple_repeat 6 104 0 * 865 162 6 6 chr11 1890890 1891069 -146892403 + (ATG)n Simple_repeat Simple_repeat 1 179 0 785 189 0 6 chr11 1891113 1891293 -146892179 + (ATG)n Simple_repeat Simple_repeat 1 179 0 519 189 13 26 chr11 1891306 1891459 -146892013 + (ATGGTG)n Simple_repeat Simple_repeat 2 152 0 2048 200 51 25 chr11 1891599 1892089 -146891383 - Charlie1b DNA MER1_type -4 519 17 2448 59 0 0 chr11 1892146 1892449 -146891023 + AluSx SINE Alu 1 303 -9 1589 188 27 60 chr11 1893336 1893782 -146889690 + MLT1C LTR MaLR 37 467 0 180 103 29 59 chr11 1895282 1895350 -146888122 + (CAGAGA)n Simple_repeat Simple_repeat 1 66 0 325 325 65 56 chr11 1895710 1895941 -146887531 + MIR SINE MIR 21 253 -9 240 233 0 111 chr11 1896233 1896297 -146887175 + MIR SINE MIR 117 170 -92 2330 91 0 0 chr11 1896297 1896605 -146886867 + AluSg SINE Alu 1 308 -2 240 233 0 111 chr11 1896605 1896630 -146886842 + MIR SINE MIR 170 196 -66 436 276 17 17 chr11 1896947 1897088 -146886384 + MIR SINE MIR 104 243 -19 678 259 38 28 chr11 1897252 1897464 -146886008 - MER20 DNA MER1_type 0 219 6 282 333 16 40 chr11 1897655 1897781 -146885691 - MIR SINE MIR -51 211 89 228 367 28 0 chr11 1897893 1898002 -146885470 - MIR SINE MIR -102 160 49 25 0 0 0 chr11 1900000 1900025 -146883447 + GC_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr11 1900058 1900092 -146883380 + GC_rich Low_complexity Low_complexity 1 34 0 383 312 75 48 chr11 1902890 1903488 -146879984 + L2 LINE L2 2451 3073 -240 191 274 14 68 chr11 1905347 1905420 -146878052 + MIR3 SINE MIR 99 167 -41 248 217 50 0 chr11 1908335 1908395 -146875077 + MIR SINE MIR 82 144 -118 13294 78 3 22 chr11 2009584 2011334 -146772138 - L1P3 LINE L1 -4738 1723 8 358 179 60 12 chr11 2011341 2011425 -146772047 - MLT1B LTR MaLR -210 180 93 2367 34 41 0 chr11 2012091 2012385 -146771087 - AluY SINE Alu -5 306 1 40 21 0 0 chr11 2012390 2012437 -146771035 + AT_rich Low_complexity Low_complexity 1 47 0 259 268 63 39 chr11 2013193 2013320 -146770152 - HERVL LTR ERVL -3194 2460 2331 271 293 47 67 chr11 2014652 2014802 -146768670 + MIR SINE MIR 70 216 -46 1532 181 57 89 chr11 2015310 2015511 -146767961 + MER57A LTR ERV1 13 196 -207 1953 129 10 0 chr11 2015511 2015806 -146767666 + AluSx SINE Alu 1 298 -14 1532 181 57 89 chr11 2015806 2016008 -146767464 + MER57A LTR ERV1 196 403 0 206 289 36 12 chr11 2016013 2016096 -146767376 - MIR SINE MIR -130 132 48 2029 116 34 0 chr11 2016152 2016445 -146767027 - AluSx SINE Alu -9 303 1 253 310 177 0 chr11 2018555 2018668 -146764804 - MIR SINE MIR -51 211 79 1068 170 28 161 chr11 2019291 2019721 -146763751 + MER93b LTR ERV1 1 373 0 4903 86 7 18 chr11 2019763 2020316 -146763156 - L1PA11 LINE L1 -128 6046 5500 1972 91 62 0 chr11 2020316 2020592 -146762880 - AluSg SINE Alu -17 293 1 4903 86 7 18 chr11 2020592 2020712 -146762760 - L1PA11 LINE L1 -674 5500 5380 394 240 39 0 chr11 2020798 2020902 -146762570 + MER5A DNA MER1_type 76 183 -6 241 174 58 116 chr11 2021411 2021497 -146761975 + LTR48 LTR ERV1 703 783 -4 765 184 23 21 chr11 2021906 2022108 -146761364 + L1MA8 LINE L1 5966 6181 -124 188 303 28 46 chr11 2022371 2022480 -146760992 + MIR SINE MIR 35 141 -67 378 289 16 31 chr11 2022548 2022676 -146760796 - L2 LINE L2 -10 3262 3137 189 0 0 0 chr11 2022893 2022914 -146760558 + (CAGA)n Simple_repeat Simple_repeat 2 22 0 322 319 89 32 chr11 2022914 2023071 -146760401 + MIR SINE MIR 49 214 -48 3522 105 8 12 chr11 2023642 2024157 -146759315 + LTR10D LTR ERV1 1 513 0 1981 138 3 0 chr11 2025040 2025345 -146758127 + AluSx SINE Alu 1 306 -6 302 289 26 46 chr11 2025852 2026004 -146757468 - MLT2F LTR ERVL -5 658 510 1206 258 141 37 chr11 2026022 2026473 -146756999 + MLT1E LTR MaLR 23 530 -63 2117 117 0 0 chr11 2026473 2026771 -146756701 - AluSx SINE Alu -14 298 1 1206 258 141 37 chr11 2026771 2026808 -146756664 + MLT1E LTR MaLR 530 562 -31 2312 84 0 3 chr11 2026858 2027168 -146756304 - AluY SINE Alu -2 309 1 2887 157 10 29 chr11 2027473 2027996 -146755476 - L1MA8 LINE L1 -159 6132 5620 2324 108 129 5 chr11 2028194 2028573 -146754899 - MSTA LTR MaLR -2 426 1 232 372 0 13 chr11 2028867 2028945 -146754527 + MIR3 SINE MIR 89 165 -43 435 139 13 0 chr11 2029084 2029163 -146754309 - MADE1 DNA Mariner 0 80 1 258 263 92 20 chr11 2031075 2031227 -146752245 - L1ME3 LINE L1 -91 6071 5909 1425 196 0 27 chr11 2032745 2033046 -146750426 + AluJb SINE Alu 1 293 -19 261 296 65 54 chr11 2034878 2035075 -146748397 - MIR SINE MIR -44 218 16 1410 154 32 0 chr11 2036814 2037035 -146746437 + MER30 DNA MER1_type 1 228 -2 578 280 118 26 chr11 2037524 2037828 -146745644 + L1ME2 LINE L1 5811 6142 -22 213 209 0 0 chr11 2037949 2037992 -146745480 + (TGGA)n Simple_repeat Simple_repeat 3 45 0 493 282 99 41 chr11 2038355 2038699 -146744773 + L1ME1 LINE L1 5762 6125 -41 23 33 0 0 chr11 2038897 2038927 -146744545 + AT_rich Low_complexity Low_complexity 1 30 0 1508 165 15 4 chr11 2040589 2040862 -146742610 - AluJo SINE Alu -22 290 15 240 207 35 0 chr11 2041038 2041096 -146742376 + G-rich Low_complexity Low_complexity 5 64 0 231 114 0 0 chr11 2041105 2041140 -146742332 + (GGGGA)n Simple_repeat Simple_repeat 1 35 0 572 211 26 0 chr11 2041503 2041617 -146741855 + AluJo SINE Alu 90 206 -106 3370 203 85 34 chr11 2041641 2043382 -146740090 + L1MA8 LINE L1 4474 6291 0 1781 138 0 4 chr11 2043513 2043781 -146739691 - AluSx SINE Alu -45 267 1 2286 98 0 7 chr11 2044227 2044524 -146738948 - AluSx SINE Alu -13 299 5 28 0 0 0 chr11 2045524 2045552 -146737920 + AT_rich Low_complexity Low_complexity 1 28 0 1771 187 3 16 chr11 2045962 2046277 -146737195 - AluJo SINE Alu -1 311 1 3536 71 0 0 chr11 2046786 2047224 -146736248 - LTR21B LTR ERV1 0 438 1 1806 243 19 63 chr11 2047224 2047846 -146735626 - HERVFH21 LTR ERV1 0 6529 5935 20686 137 30 21 chr11 2047847 2051959 -146731513 - HERVFH21 LTR ERV1 -1791 4738 539 1794 200 60 25 chr11 2051953 2052498 -146730974 - HERVFH21 LTR ERV1 -5951 578 1 * 3478 58 11 0 chr11 2052499 2052932 -146730540 - LTR21B LTR ERV1 0 438 1 226 310 58 7 chr11 2055945 2056100 -146727372 + L1M4c LINE L1 1951 2113 -4917 764 261 67 71 chr11 2056135 2056386 -146727086 + L1M4c LINE L1 2013 2264 -4842 1790 181 0 10 chr11 2056386 2056678 -146726794 + AluJb SINE Alu 1 289 -23 764 261 67 71 chr11 2056678 2058148 -146725324 + L1M4c LINE L1 2264 3837 -3269 987 275 22 16 chr11 2058159 2058479 -146724993 + L1 LINE L1 4519 4840 -1306 237 363 6 0 chr11 2058512 2058669 -146724803 + L1M3 LINE L1 1684 1841 -5009 * 400 248 14 35 chr11 2058648 2058789 -146724683 + L1M3 LINE L1 2464 2601 -4248 567 208 32 8 chr11 2058796 2058921 -146724551 + FLAM_C SINE Alu 6 133 -10 897 265 123 33 chr11 2059115 2060107 -146723365 + L1M3 LINE L1 2493 3569 -3279 1847 230 111 36 chr11 2060152 2060587 -146722885 + L1M3 LINE L1 5246 5647 -1226 2594 51 0 22 chr11 2060587 2060902 -146722570 + AluY SINE Alu 1 308 -3 1847 230 111 36 chr11 2060902 2061408 -146722064 + L1M3 LINE L1 5647 6311 -562 1753 170 0 0 chr11 2061408 2061691 -146721781 + AluJb SINE Alu 15 297 -15 1847 230 111 36 chr11 2061691 2061918 -146721554 + L1M3 LINE L1 6311 6520 -353 2188 91 7 21 chr11 2062402 2062712 -146720760 + AluSp SINE Alu 2 307 0 269 271 21 21 chr11 2062834 2062930 -146720542 + L1MA9 LINE L1 3 98 -5857 485 275 8 0 chr11 2062940 2063060 -146720412 + FLAM_C SINE Alu 4 124 -19 259 297 0 0 chr11 2063060 2063124 -146720348 + L1MA9 LINE L1 92 155 -5800 * 1735 264 44 15 chr11 2063121 2063709 -146719763 + L1MA9 LINE L1 4463 5067 -967 310 240 53 0 chr11 2063772 2063847 -146719625 + MADE1 DNA Mariner 1 79 -1 2829 228 44 22 chr11 2063848 2064624 -146718848 + L1MA9 LINE L1 5378 6170 -30 434 165 1 3 chr11 2064674 2064780 -146718692 + L1MA4 LINE L1 5745 5849 -314 226 143 54 0 chr11 2064812 2064868 -146718604 - L1MCa LINE L1 -4362 2064 2006 254 364 0 0 chr11 2066680 2066779 -146716693 - MER5A DNA MER1_type -80 109 11 500 254 113 24 chr11 2066935 2067148 -146716324 + L1MC4 LINE L1 7278 7509 -533 1995 138 0 7 chr11 2067355 2067652 -146715820 - AluSx SINE Alu -16 296 2 246 300 100 27 chr11 2068631 2068781 -146714691 + MER5B DNA MER1_type 17 177 -1 1162 78 203 5 chr11 2070882 2071074 -146712398 + MER30 DNA MER1_type 1 230 0 2446 59 0 0 chr11 2072647 2072934 -146710538 + AluSx SINE Alu 1 287 -25 1179 280 19 24 chr11 2072938 2073310 -146710162 + MER93a LTR ERV1 7 376 -26 28 0 0 0 chr11 2073496 2073524 -146709948 + GC_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr11 2074048 2074072 -146709400 + AT_rich Low_complexity Low_complexity 1 24 0 819 263 103 0 chr11 2074196 2074477 -146708995 - MER33 DNA MER1_type -14 310 1 1368 234 119 66 chr11 2075022 2075384 -146708088 - MLT1H LTR MaLR 0 549 151 2640 98 0 3 chr11 2075384 2075740 -146707732 + THE1A LTR MaLR 1 355 0 1368 234 119 66 chr11 2075740 2075891 -146707581 - MLT1H LTR MaLR -398 151 9 237 269 37 37 chr11 2075935 2076043 -146707429 - MIR SINE MIR -97 111 4 413 269 46 29 chr11 2076576 2076751 -146706721 + MER5B DNA MER1_type 1 178 0 646 101 37 9 chr11 2076756 2076865 -146706607 - L1PA13 LINE L1 0 6163 6052 232 306 14 0 chr11 2076865 2076937 -146706535 + L2 LINE L2 3232 3304 -9 564 296 11 11 chr11 2077766 2077945 -146705527 - MIR SINE MIR -62 200 22 250 222 19 0 chr11 2077941 2077995 -146705477 - L2 LINE L2 0 3272 3218 * 266 299 28 75 chr11 2078168 2078224 -146705248 - MIR SINE MIR -49 213 156 2505 63 0 10 chr11 2078224 2078527 -146704945 + AluY SINE Alu 1 300 -11 266 299 28 75 chr11 2078527 2078684 -146704788 - MIR SINE MIR -106 156 10 297 278 85 46 chr11 2079739 2080020 -146703452 - HAL1 LINE L1 -1124 1383 1092 1160 186 11 76 chr11 2080046 2080321 -146703151 - L1MC1 LINE L1 0 6333 6077 329 280 119 0 chr11 2080624 2080767 -146702705 + L1P LINE L1 3725 3884 -2262 902 192 41 0 chr11 2081236 2081408 -146702064 - MSTD LTR MaLR 0 396 218 567 244 95 75 chr11 2081534 2081773 -146701699 + SATR1 Satellite Satellite 4 237 -687 2523 51 0 0 chr11 2081773 2082068 -146701404 + AluY SINE Alu 1 295 -16 567 244 95 75 chr11 2082068 2082389 -146701083 + SATR1 Satellite Satellite 237 778 -146 954 236 316 6 chr11 2082430 2083557 -146699915 + SATR1 Satellite Satellite 1 1476 -2 1063 218 187 53 chr11 2083581 2085365 -146698107 + SATR1 Satellite Satellite 1 2022 -404 2045 128 0 3 chr11 2087069 2087373 -146696099 + AluY SINE Alu 1 303 -8 195 250 81 81 chr11 2087431 2087567 -146695905 - L2 LINE L2 0 3272 3137 2093 120 0 19 chr11 2087929 2088245 -146695227 - AluSg SINE Alu 0 310 1 3391 208 17 63 chr11 2089177 2090193 -146693279 - LTR5 LTR ERVK 0 969 1 31 0 0 0 chr11 2090649 2090680 -146692792 + AT_rich Low_complexity Low_complexity 1 31 0 1244 225 15 44 chr11 2090700 2090953 -146692519 - L1MB3 LINE L1 -30 6153 5911 1962 153 0 7 chr11 2090953 2091247 -146692225 - AluSx SINE Alu -18 294 3 1244 225 15 44 chr11 2091247 2091335 -146692137 - L1MB3 LINE L1 -272 5911 5822 272 83 21 0 chr11 2091336 2091384 -146692088 + (TTTTG)n Simple_repeat Simple_repeat 1 49 0 8091 92 72 71 chr11 2091386 2092719 -146690753 + SVA Other Other 53 1386 0 709 228 41 15 chr11 2092737 2092957 -146690515 + MLT1C LTR MaLR 238 363 -2 2716 81 100 5 chr11 2093413 2093822 -146689650 + LTR7 LTR ERV1 1 448 -2 246 282 77 0 chr11 2094511 2094589 -146688883 + MLT1J2 LTR MaLR 252 335 -115 2009 133 3 0 chr11 2094969 2095278 -146688194 + AluSx SINE Alu 1 310 -2 1017 196 72 0 chr11 2096586 2096795 -146686677 + MER58A DNA MER1_type 1 224 0 231 353 0 0 chr11 2096992 2097060 -146686412 + L2 LINE L2 3153 3220 -52 1902 123 35 0 chr11 2097890 2098175 -146685297 + AluSx SINE Alu 5 299 -13 1974 128 24 0 chr11 2098556 2098852 -146684620 - AluSx SINE Alu -9 303 1 1779 119 32 11 chr11 2100125 2100410 -146683062 - AluSx SINE Alu -21 291 1 1899 101 4 14 chr11 2100488 2100797 -146682675 - AluSq SINE Alu 0 313 16 625 133 0 0 chr11 2100798 2100913 -146682559 + AluSg/x SINE Alu 198 309 0 431 73 176 0 chr11 2101448 2101516 -146681956 - MADE1 DNA Mariner 0 80 1 825 245 40 0 chr11 2102749 2102949 -146680523 - MER58A DNA MER1_type -16 208 1 2170 96 3 13 chr11 2105417 2105719 -146677753 + AluSx SINE Alu 1 299 -13 378 0 0 0 chr11 2105720 2105762 -146677710 + (CA)n Simple_repeat Simple_repeat 1 42 0 1028 147 58 0 chr11 2105823 2106013 -146677459 - AluJo SINE Alu -6 306 106 1839 124 13 52 chr11 2106051 2106357 -146677115 - AluSx SINE Alu -11 301 8 1184 110 12 0 chr11 2106495 2106668 -146676804 + MER30 DNA MER1_type 1 175 -55 1317 151 5 0 chr11 2106786 2107005 -146676467 - AluJo SINE Alu -92 220 1 275 280 144 8 chr11 2107278 2107410 -146676062 + MIR SINE MIR 81 230 -32 247 254 15 15 chr11 2107568 2107635 -146675837 - MIR SINE MIR -115 147 81 628 314 74 0 chr11 2109402 2109631 -146673841 + L1MD2 LINE L1 5763 6008 -351 1782 128 45 14 chr11 2109688 2109844 -146673628 - AluSg SINE Alu -11 299 128 2198 104 3 0 chr11 2109844 2110143 -146673329 - AluSq SINE Alu -13 300 1 1782 128 45 14 chr11 2110143 2110274 -146673198 - AluSg SINE Alu -182 128 3 301 290 73 67 chr11 2110353 2110494 -146672978 - MIR SINE MIR -68 140 43 709 153 51 8 chr11 2110796 2110914 -146672558 + FLAM_A SINE Alu 4 126 -7 2050 132 3 0 chr11 2111413 2111717 -146671755 + AluSx SINE Alu 1 305 -7 510 275 194 14 chr11 2111729 2112096 -146671376 - LTR33A LTR ERVL -16 507 75 1990 141 0 0 chr11 2112991 2113288 -146670184 - AluSx SINE Alu -15 297 1 841 262 88 31 chr11 2114743 2115228 -146668244 + L2 LINE L2 2777 3312 -1 865 247 64 0 chr11 2115228 2115463 -146668009 - MIR SINE MIR 0 262 13 180 136 45 68 chr11 2115488 2115532 -146667940 + MIR SINE MIR 135 177 -85 413 253 88 50 chr11 2117732 2117914 -146665558 - L2 LINE L2 -3 3310 3122 2235 90 3 7 chr11 2118960 2119270 -146664202 - AluSq SINE Alu -4 309 1 1885 107 32 0 chr11 2119364 2119645 -146663827 - AluSc SINE Alu -19 290 1 1510 178 28 14 chr11 2120302 2120588 -146662884 + AluJo SINE Alu 1 290 -22 1442 192 27 72 chr11 2120608 2120761 -146662711 + MLT1C LTR MaLR 41 199 -268 1959 124 3 7 chr11 2120761 2121059 -146662413 + AluSx SINE Alu 1 297 -15 1442 192 27 72 chr11 2121059 2121306 -146662166 + MLT1C LTR MaLR 199 423 -44 2100 121 3 0 chr11 2121330 2121636 -146661836 - AluSq SINE Alu -6 307 1 1470 170 58 7 chr11 2121642 2121919 -146661553 - AluJo SINE Alu -21 291 1 538 164 95 9 chr11 2121920 2122036 -146661436 - MER45A DNA AcHobo -52 126 1 1454 176 127 0 chr11 2122816 2123083 -146660389 - AluJo SINE Alu -1 301 1 555 251 91 23 chr11 2124194 2124413 -146659059 - MIR SINE MIR 0 262 29 1331 185 46 73 chr11 2124575 2124877 -146658595 - AluJo SINE Alu -18 294 1 2016 126 7 10 chr11 2125075 2125385 -146658087 + AluSx SINE Alu 2 310 -2 2162 107 0 7 chr11 2126006 2126316 -146657156 - AluSx SINE Alu -4 308 1 1556 182 3 43 chr11 2126418 2126606 -146656866 - AluJb SINE Alu -1 311 140 1771 113 65 28 chr11 2126606 2126897 -146656575 - AluSx SINE Alu -10 302 1 1556 182 3 43 chr11 2126897 2127032 -146656440 - AluJb SINE Alu -172 140 1 1956 182 23 88 chr11 2127043 2127113 -146656359 - L1MB7 LINE L1 0 6184 6111 1774 157 3 10 chr11 2127113 2127413 -146656059 + AluJb SINE Alu 1 298 -14 1956 182 23 88 chr11 2127413 2127913 -146655559 - L1MB7 LINE L1 -73 6111 5651 4287 115 130 125 chr11 2128126 2129492 -146653980 - pTR5 LTR ERV1 0 2438 742 2349 156 46 11 chr11 2129492 2129929 -146653543 - MER66B LTR ERV1 -34 452 1 1453 172 0 16 chr11 2129929 2130179 -146653293 - AluJb SINE Alu -66 246 1 297 339 46 8 chr11 2130199 2130329 -146653143 + MIR SINE MIR 96 230 -32 1785 173 0 22 chr11 2130351 2130669 -146652803 - AluJo SINE Alu -1 311 1 183 167 0 0 chr11 2130808 2130850 -146652622 + (TTATA)n Simple_repeat Simple_repeat 1 42 0 2196 103 0 0 chr11 2130850 2131140 -146652332 - AluSx SINE Alu -22 290 1 550 286 14 0 chr11 2132017 2132164 -146651308 - MER104 DNA Tc2 -4 176 28 385 296 16 40 chr11 2132200 2132325 -146651147 + L1MC4 LINE L1 6582 6703 -1339 1402 157 0 67 chr11 2132339 2132450 -146651022 - AluJo SINE Alu -63 249 132 1910 161 0 0 chr11 2132450 2132748 -146650724 - AluSx SINE Alu -14 298 1 1402 157 0 67 chr11 2132748 2132903 -146650569 - AluJo SINE Alu -180 132 1 1086 101 0 0 chr11 2132998 2133146 -146650326 - AluSp/q SINE Alu -5 308 161 424 288 17 45 chr11 2133341 2133518 -146649954 + MLT1K LTR MaLR 98 269 -319 544 152 0 0 chr11 2133706 2133785 -146649687 + Alu SINE Alu 216 294 -17 1420 156 67 25 chr11 2133795 2134077 -146649395 + AluJo SINE Alu 1 294 -18 382 257 176 0 chr11 2134083 2134219 -146649253 + MIR SINE MIR 31 190 -72 965 217 69 0 chr11 2134857 2135074 -146648398 + LTR16A1 LTR ERVL 226 457 0 371 268 68 63 chr11 2135198 2135388 -146648084 + L2 LINE L2 3120 3310 -3 1966 155 0 3 chr11 2135446 2135756 -146647716 - AluSg SINE Alu -1 309 1 255 79 0 0 chr11 2136329 2136367 -146647105 + (CA)n Simple_repeat Simple_repeat 1 38 0 240 161 0 0 chr11 2137564 2137626 -146645846 + GA-rich Low_complexity Low_complexity 1 62 0 739 266 99 9 chr11 2138449 2138682 -146644790 + MIR SINE MIR 3 256 -6 755 181 23 84 chr11 2138831 2138899 -146644573 - MER3 DNA MER1_type 0 209 138 2028 126 3 0 chr11 2138899 2139192 -146644280 + AluSx SINE Alu 1 294 -18 755 181 23 84 chr11 2139192 2139338 -146644134 - MER3 DNA MER1_type -71 138 8 3325 139 50 2 chr11 2139358 2139861 -146643611 - MER1A DNA MER1_type 0 527 1 2172 108 0 0 chr11 2139948 2140245 -146643227 - AluSq SINE Alu -16 297 1 575 314 24 24 chr11 2140269 2140479 -146642993 - MIR SINE MIR -45 217 8 337 284 74 0 chr11 2140829 2140924 -146642548 - L2 LINE L2 -12 3260 3159 458 275 8 15 chr11 2140978 2141109 -146642363 - MIR SINE MIR -54 208 79 2682 221 28 58 chr11 2141427 2142290 -146641182 - LTR5 LTR ERVK 0 969 133 9857 93 0 28 chr11 2242367 2243784 -146539688 + HERVH LTR ERV1 1537 2914 -4799 1374 94 5 15 chr11 2243884 2244087 -146539385 + AluY SINE Alu 104 304 -7 1665 154 20 24 chr11 2244174 2244472 -146539000 - AluJb SINE Alu -15 297 1 2030 141 0 10 chr11 2244476 2244788 -146538684 - AluSx SINE Alu -3 309 1 2316 73 0 3 chr11 2244795 2245095 -146538377 - AluY SINE Alu -12 299 1 496 212 66 15 chr11 2245145 2245282 -146538190 + L1ME2 LINE L1 5429 5572 -592 356 223 143 34 chr11 2245283 2245458 -146538014 + L1ME2 LINE L1 5695 5888 -276 1769 155 10 3 chr11 2245830 2246133 -146537339 + AluSx SINE Alu 6 310 -2 248 302 190 17 chr11 2246154 2246270 -146537202 + L3 LINE CR1 1286 1421 -156 2081 93 10 0 chr11 2246587 2246876 -146536596 - AluSx SINE Alu -20 292 1 22 35 0 0 chr11 2246973 2247002 -146536470 + AT_rich Low_complexity Low_complexity 1 29 0 870 171 158 10 chr11 2247141 2247438 -146536034 + Tigger2a DNA MER2_type 1 443 -1 1721 131 0 22 chr11 2247558 2247833 -146535639 + AluSx SINE Alu 1 269 -43 377 278 105 105 chr11 2247939 2248252 -146535220 - L2 LINE L2 -87 3185 2873 28 0 0 0 chr11 2248375 2248403 -146535069 + AT_rich Low_complexity Low_complexity 1 28 0 933 78 0 0 chr11 2248403 2248519 -146534953 - AluJb SINE Alu -194 118 3 252 278 213 9 chr11 2249625 2249733 -146533739 + MIR3 SINE MIR 51 180 -28 517 128 13 0 chr11 2250120 2250198 -146533274 - AluS SINE Alu -233 80 2 2021 252 26 6 chr11 2250198 2251193 -146532279 - L1MB3 LINE L1 -351 5832 4818 2084 97 3 3 chr11 2251238 2251538 -146531934 + AluSp SINE Alu 1 300 -13 1254 225 3 72 chr11 2251622 2251824 -146531648 - L1MA4 LINE L1 -175 6125 5961 1593 167 0 4 chr11 2251824 2252105 -146531367 - AluSx SINE Alu -32 280 1 1254 225 3 72 chr11 2252105 2252288 -146531184 - L1MA4 LINE L1 -339 5961 5767 278 259 105 35 chr11 2252326 2252469 -146531003 + HsTC2 DNA Tc2 1631 1783 -115 245 86 0 0 chr11 2252474 2252509 -146530963 + Alu SINE Alu 1 35 -266 1501 147 10 48 chr11 2252638 2252931 -146530541 - AluJo SINE Alu -8 304 23 360 299 215 49 chr11 2254363 2254688 -146528784 - L2 LINE L2 -2 3311 2933 4091 156 61 20 chr11 2255054 2255079 -146528393 + L1MB7 LINE L1 5142 5165 -1019 2350 88 0 0 chr11 2255079 2255386 -146528086 + AluSp SINE Alu 1 307 -6 4091 156 61 20 chr11 2255386 2256211 -146527261 + L1MB7 LINE L1 5165 6027 -157 2141 116 3 0 chr11 2256211 2256522 -146526950 - AluSx SINE Alu 0 312 1 4091 156 61 20 chr11 2256522 2256600 -146526872 + L1MB7 LINE L1 6027 6100 -84 1328 108 0 5 chr11 2256754 2256939 -146526533 - AluSx SINE Alu -128 184 1 625 230 103 118 chr11 2256941 2257280 -146526192 - L2 LINE L2 -12 3260 2927 1969 135 3 3 chr11 2258229 2258541 -146524931 - AluSx SINE Alu 0 312 1 785 189 0 0 chr11 2258543 2258675 -146524797 - FLAM_A SINE Alu -1 132 1 249 200 71 12 chr11 2259548 2259633 -146523839 - MIR SINE MIR -79 183 94 206 270 30 50 chr11 2259632 2259732 -146523740 + L2 LINE L2 2311 2408 -906 * 195 298 39 10 chr11 2259984 2260088 -146523384 + L2 LINE L2 2888 2994 -278 265 244 39 13 chr11 2260099 2260177 -146523295 + L2 LINE L2 3229 3308 -5 355 313 52 82 chr11 2260222 2260490 -146522982 + MIR SINE MIR 3 262 0 200 258 153 48 chr11 2261241 2261365 -146522107 - MIR3 SINE MIR -31 177 41 2330 62 3 7 chr11 2262018 2262323 -146521149 - AluY SINE Alu -7 304 1 1797 106 8 0 chr11 2262634 2262888 -146520584 + AluSq SINE Alu 52 307 -6 722 157 17 0 chr11 2262888 2263003 -146520469 - AluJo/FLAM SINE Alu -194 118 2 362 267 46 36 chr11 2263067 2263234 -146520238 + MIR SINE MIR 21 183 -62 221 333 50 17 chr11 2263566 2263686 -146519786 + L2 LINE L2 2930 3053 -219 320 273 13 0 chr11 2266106 2266183 -146517289 - MIR3 SINE MIR -5 203 126 182 270 32 16 chr11 2266492 2266555 -146516917 + MIR SINE MIR 108 171 -91 191 364 26 0 chr11 2267861 2267938 -146515534 + MIR SINE MIR 34 112 -150 1018 136 21 21 chr11 2268026 2268043 -146515429 + AluSg/x SINE Alu 118 134 -176 2145 112 16 0 chr11 2268043 2268348 -146515124 + AluSq SINE Alu 1 310 -3 1018 136 21 21 chr11 2268348 2268521 -146514951 + AluSg/x SINE Alu 133 308 -2 329 193 148 34 chr11 2268522 2268610 -146514862 - L1MC4 LINE L1 -1339 6703 6606 441 141 39 0 chr11 2268611 2268689 -146514783 - L1MB7 LINE L1 -84 6100 6020 940 439 90 4 chr11 2268689 2268967 -146514505 + AluJb SINE Alu 1 302 0 358 239 97 9 chr11 2269164 2269277 -146514195 + MER5B DNA MER1_type 50 172 -6 744 218 46 0 chr11 2269382 2269579 -146513893 - MER6B DNA MER2_type 0 210 5 1278 128 27 14 chr11 2271472 2271691 -146511781 + AluSq SINE Alu 1 222 -91 838 231 280 3 chr11 2271695 2272024 -146511448 + SATR1 Satellite Satellite 48 467 -3 2037 181 99 24 chr11 2272054 2272861 -146510611 + SATR1 Satellite Satellite 1 866 -93 2922 104 12 2 chr11 2272890 2273314 -146510158 - Tigger1 DNA MER2_type -1404 1014 587 1245 165 5 5 chr11 2273314 2273532 -146509940 + AluJo SINE Alu 1 218 -94 522 176 11 11 chr11 2273532 2273623 -146509849 + AluJb SINE Alu 84 174 -138 448 195 46 0 chr11 2273637 2273724 -146509748 + Tigger1 DNA MER2_type 501 591 -1827 424 115 33 0 chr11 2273724 2273785 -146509687 - Alu SINE Alu -16 296 234 583 68 0 0 chr11 2273791 2273864 -146509608 + AluSg/x SINE Alu 176 248 -62 1121 177 9 19 chr11 2273864 2273915 -146509557 + AluJo SINE Alu 85 135 -177 2343 86 0 6 chr11 2273915 2274228 -146509244 + AluY SINE Alu 1 311 0 1121 177 9 19 chr11 2274228 2274391 -146509081 + AluJo SINE Alu 135 297 -15 478 220 0 0 chr11 2274392 2274483 -146508989 - Tigger1 DNA MER2_type -1827 591 501 1251 143 37 0 chr11 2274600 2274789 -146508683 - Tigger1 DNA MER2_type -1944 474 279 1083 177 80 17 chr11 2274816 2275053 -146508419 + AluJo SINE Alu 44 295 -17 1542 153 38 11 chr11 2275053 2275314 -146508158 - Tigger1 DNA MER2_type -2127 291 24 301 284 183 24 chr11 2275514 2275683 -146507789 - MIR3 SINE MIR -10 198 3 399 308 17 17 chr11 2276153 2276273 -146507199 + L2 LINE L2 3192 3311 -2 351 230 14 0 chr11 2276295 2276369 -146507103 + MER94 DNA DNA 1 75 -59 237 335 7 20 chr11 2277263 2277415 -146506057 + CT-rich Low_complexity Low_complexity 2 151 0 410 289 59 48 chr11 2278059 2278246 -146505226 + MIR SINE MIR 59 247 -15 223 339 99 6 chr11 2278362 2278533 -146504939 + L2 LINE L2 2168 2354 -960 1140 148 31 10 chr11 2278601 2278797 -146504675 - AluJo SINE Alu -112 200 1 2121 67 34 17 chr11 2279218 2279515 -146503957 + AluY SINE Alu 1 302 -9 1589 173 7 0 chr11 2279613 2279884 -146503588 - AluJo SINE Alu -39 273 1 191 293 43 0 chr11 2280001 2280055 -146503417 - MIR SINE MIR -104 104 48 216 237 46 118 chr11 2280235 2280387 -146503085 - MIR SINE MIR -69 193 53 28 29 0 0 chr11 2280740 2280775 -146502697 + AT_rich Low_complexity Low_complexity 1 35 0 264 325 18 61 chr11 2282562 2282676 -146500796 - MIR SINE MIR -81 127 19 295 269 181 40 chr11 2282833 2282982 -146500490 - L2 LINE L2 -184 3088 2919 670 149 116 25 chr11 2283069 2283190 -146500282 - FLAM_C SINE Alu 0 133 2 316 352 56 16 chr11 2283270 2283395 -146500077 + L2 LINE L2 3139 3268 -4 278 208 19 0 chr11 2283471 2283524 -146499948 - L2 LINE L2 -11 3261 3208 1422 103 43 47 chr11 2283576 2283810 -146499662 + AluSg SINE Alu 64 296 -14 309 321 73 73 chr11 2283811 2284029 -146499443 - MIR SINE MIR -22 240 23 1867 150 0 7 chr11 2284441 2284741 -146498731 + AluSx SINE Alu 7 304 -8 10374 149 61 65 chr11 2285434 2286140 -146497332 - Tigger1 DNA MER2_type 0 2418 1711 1606 166 17 20 chr11 2286140 2286442 -146497030 - AluJb SINE Alu -9 303 3 10374 149 61 65 chr11 2286442 2286655 -146496817 - Tigger1 DNA MER2_type -707 1711 1499 1671 156 3 7 chr11 2286655 2286937 -146496535 - AluJb SINE Alu -31 281 1 10374 149 61 65 chr11 2286937 2288442 -146495030 - Tigger1 DNA MER2_type -919 1499 1 23 0 0 0 chr11 2288541 2288564 -146494908 + AT_rich Low_complexity Low_complexity 1 23 0 2015 116 10 0 chr11 2289142 2289434 -146494038 - AluSp SINE Alu -18 295 1 299 73 0 0 chr11 2290832 2290873 -146492599 - Alu SINE Alu -5 297 257 418 238 0 10 chr11 2290910 2291011 -146492461 - L1MA10 LINE L1 -30 6304 6205 1651 142 33 11 chr11 2291017 2291292 -146492180 + AluSx SINE Alu 6 286 -26 1152 191 9 26 chr11 2291314 2291544 -146491928 - AluJb SINE Alu -86 226 1 1316 196 19 16 chr11 2291544 2291861 -146491611 - L1M4 LINE L1 -842 5304 4987 512 251 23 51 chr11 2291865 2292080 -146491392 + L1M4 LINE L1 3170 3378 -2768 802 61 0 0 chr11 2292090 2292188 -146491284 + AluY SINE Alu 1 98 -220 539 122 71 0 chr11 2292219 2292317 -146491155 + L1MB3 LINE L1 5338 5442 -728 * 695 117 39 36 chr11 2292314 2292433 -146491039 + L1MB3 LINE L1 6027 6135 -45 2145 71 29 35 chr11 2292433 2292743 -146490729 + AluY SINE Alu 1 308 -3 695 117 39 36 chr11 2292743 2292789 -146490683 + L1MB3 LINE L1 6135 6179 -1 1816 109 0 0 chr11 2292823 2293070 -146490402 + AluSx SINE Alu 1 247 -65 2138 81 3 11 chr11 2293177 2293481 -146489991 + AluSx SINE Alu 2 303 0 213 232 0 0 chr11 2293813 2293882 -146489590 + (TTCA)n Simple_repeat Simple_repeat 3 71 0 592 239 149 12 chr11 2293894 2294149 -146489323 - L1MC4 LINE L1 0 8042 7753 235 155 86 0 chr11 2294157 2294215 -146489257 - L1MCa LINE L1 -4358 2068 2006 317 315 0 22 chr11 2294221 2294310 -146489162 + L1MC4 LINE L1 6617 6703 -1339 * 339 310 23 0 chr11 2294282 2294369 -146489103 - L1MC4 LINE L1 -1339 6703 6615 2083 98 3 0 chr11 2294369 2294664 -146488808 - AluSg SINE Alu -14 296 1 1489 249 179 15 chr11 2294666 2295250 -146488222 - L1MC4 LINE L1 -282 7760 7047 2229 113 0 0 chr11 2295250 2295560 -146487912 - AluSx SINE Alu -2 310 1 1489 249 179 15 chr11 2295560 2295655 -146487817 - L1MC4 LINE L1 -995 7047 6969 2113 111 7 0 chr11 2295705 2296003 -146487469 - AluSx SINE Alu -12 300 1 1830 155 4 4 chr11 2296023 2296301 -146487171 - AluJb SINE Alu -12 300 23 262 326 165 25 chr11 2296575 2296811 -146486661 - L2 LINE L2 -185 3087 2819 1699 154 82 4 chr11 2297229 2297509 -146485963 - AluJb SINE Alu -8 304 3 422 276 96 82 chr11 2297866 2297921 -146485551 + L2 LINE L2 2569 2622 -650 2034 148 0 3 chr11 2297921 2298212 -146485260 - AluSx SINE Alu -22 290 1 422 276 96 82 chr11 2298212 2298633 -146484839 + L2 LINE L2 2622 3070 -202 849 135 0 64 chr11 2298685 2298826 -146484646 - FLAM_C SINE Alu -11 132 1 376 254 118 0 chr11 2298880 2298990 -146484482 + L2 LINE L2 3191 3313 0 263 280 0 13 chr11 2301346 2301421 -146482051 + (CTCA)n Simple_repeat Simple_repeat 2 75 0 2478 66 0 7 chr11 2302975 2303278 -146480194 - AluY SINE Alu -10 301 1 1131 142 12 0 chr11 2305443 2305612 -146477860 - AluSg/x SINE Alu -8 302 132 2353 100 0 3 chr11 2305612 2305912 -146477560 - AluSx SINE Alu -7 305 7 307 288 0 0 chr11 2305915 2305988 -146477484 + MIR SINE MIR 51 123 -139 261 275 14 0 chr11 2306070 2306139 -146477333 + L3 LINE CR1 1494 1563 -14 1873 104 107 4 chr11 2308142 2308422 -146475050 + AluSg1 SINE Alu 1 309 0 2537 59 0 0 chr11 2308779 2309068 -146474404 + AluSc SINE Alu 1 289 -20 1655 205 109 17 chr11 2309399 2309819 -146473653 - LTR2B LTR ERV1 0 490 32 415 315 129 4 chr11 2310550 2310791 -146472681 - L2 LINE L2 -83 3189 2919 193 370 59 0 chr11 2311036 2311155 -146472317 - L2 LINE L2 -565 2749 2624 236 200 0 0 chr11 2311696 2311741 -146471731 - L2 LINE L2 -2 3270 3226 1161 145 31 110 chr11 2311754 2311881 -146471591 + L1MA10 LINE L1 6042 6177 -157 195 42 0 0 chr11 2311881 2311905 -146471567 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2117 100 14 11 chr11 2311914 2312224 -146471248 + AluSp SINE Alu 1 311 0 2028 143 6 16 chr11 2312229 2312544 -146470928 + AluSx SINE Alu 1 312 0 1161 145 31 110 chr11 2312544 2312717 -146470755 + L1MA10 LINE L1 6189 6334 0 2288 66 5 2 chr11 2312824 2313182 -146470290 + LTR7 LTR ERV1 1 448 -2 10108 95 3 10 chr11 2313184 2314657 -146468815 + HERVH LTR ERV1 1 1462 -6251 717 36 0 0 chr11 2314757 2314841 -146468631 + LTR7 LTR ERV1 365 448 -2 269 367 9 0 chr11 2314883 2314992 -146468480 + L2 LINE L2 2420 2529 -785 643 282 68 19 chr11 2316551 2316914 -146466558 - LTR16C LTR ERVL -2 489 52 325 286 91 26 chr11 2317018 2317172 -146466300 - MLT1K LTR MaLR -326 262 99 2432 92 0 3 chr11 2317259 2317564 -146465908 - AluSq SINE Alu -9 304 1 1309 138 0 96 chr11 2317579 2317686 -146465786 - AluJo SINE Alu -77 235 119 306 0 0 0 chr11 2317686 2317720 -146465752 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1989 96 4 0 chr11 2317726 2317977 -146465495 - AluSx SINE Alu -25 287 36 1309 138 0 96 chr11 2317977 2318122 -146465350 - AluJo SINE Alu -198 114 1 204 164 0 55 chr11 2318206 2318261 -146465211 - L2 LINE L2 -930 2384 2333 2146 131 0 0 chr11 2318623 2318920 -146464552 + AluJo SINE Alu 1 297 -15 402 282 74 31 chr11 2318922 2319382 -146464090 + L1ME4a LINE L1 5437 5905 -216 2290 108 3 16 chr11 2319382 2319698 -146463774 + AluSx SINE Alu 1 312 0 292 205 16 0 chr11 2320471 2320544 -146462928 - MIR SINE MIR -66 142 80 2514 68 0 10 chr11 2322821 2323128 -146460344 - AluSq SINE Alu -9 304 1 420 254 79 0 chr11 2323477 2323607 -146459865 + MIR3 SINE MIR 28 168 -40 282 264 104 110 chr11 2323811 2323893 -146459579 - MIR SINE MIR -75 187 106 2417 64 4 0 chr11 2323893 2324209 -146459263 + AluSp SINE Alu 1 317 0 282 264 104 110 chr11 2324209 2324307 -146459165 - MIR SINE MIR -156 106 7 1162 0 50 6 chr11 2324333 2324492 -146458980 + (CATCT)n Simple_repeat Simple_repeat 5 170 0 355 254 67 8 chr11 2324534 2324655 -146458817 - MIR SINE MIR -82 126 21 1444 146 0 0 chr11 2324929 2325135 -146458337 - AluJo SINE Alu -21 291 86 609 118 0 11 chr11 2325148 2325241 -146458231 - HY4 scRNA scRNA 0 93 2 334 274 45 57 chr11 2325901 2326058 -146457414 + L2 LINE L2 3031 3185 -87 1025 167 0 0 chr11 2326334 2326484 -146456988 - AluJo SINE Alu -76 236 87 555 140 0 11 chr11 2326496 2326589 -146456883 - HY4 scRNA scRNA 0 93 2 1156 178 130 0 chr11 2326590 2326837 -146456635 + MLT2B3 LTR ERVL 43 321 -233 513 243 15 7 chr11 2328198 2328334 -146455138 + MIR SINE MIR 126 262 0 261 233 48 101 chr11 2329412 2329562 -146453910 + MER34B LTR ERV1 322 462 -103 2438 74 0 0 chr11 2329562 2329858 -146453614 + AluY SINE Alu 1 296 -15 261 233 48 101 chr11 2329858 2329896 -146453576 + MER34B LTR ERV1 462 500 -65 207 302 223 0 chr11 2330821 2330960 -146452512 + MIR SINE MIR 77 246 -16 292 284 67 37 chr11 2331808 2331942 -146451530 + L1ME1 LINE L1 6000 6137 -29 2245 123 0 0 chr11 2332349 2332649 -146450823 - AluSx SINE Alu -12 300 1 602 206 30 0 chr11 2332703 2332834 -146450638 + FLAM_C SINE Alu 1 135 -8 595 101 20 20 chr11 2332842 2332941 -146450531 + U13 snRNA snRNA 6 104 0 828 155 101 54 chr11 2332972 2333140 -146450332 + FRAM SINE Alu 1 170 -6 1844 98 117 4 chr11 2333143 2333408 -146450064 + AluSg1 SINE Alu 3 297 -12 566 228 0 0 chr11 2334372 2334486 -146448986 - FLAM_C SINE Alu -27 116 3 1091 83 0 0 chr11 2334744 2334877 -146448595 + AluSq/x SINE Alu 1 133 -179 2267 114 7 0 chr11 2334886 2335194 -146448278 + AluSq SINE Alu 1 310 -3 2410 100 0 0 chr11 2335255 2335556 -146447916 + AluY SINE Alu 1 301 -10 611 202 0 17 chr11 2335568 2335687 -146447785 + AluJ SINE Alu 6 122 -190 997 193 0 0 chr11 2335805 2335966 -146447506 + AluJ SINE Alu 129 289 -23 2060 147 3 0 chr11 2336706 2337006 -146446466 + AluSq SINE Alu 1 301 -12 1957 158 0 0 chr11 2337018 2337297 -146446175 + AluSx SINE Alu 3 281 -31 2224 119 6 3 chr11 2337323 2337634 -146445838 + AluSx SINE Alu 1 312 0 878 135 14 21 chr11 2337927 2338068 -146445404 + FLAM_C SINE Alu 1 140 -3 2095 119 3 34 chr11 2338325 2338645 -146444827 + AluSq SINE Alu 1 310 -3 375 286 140 76 chr11 2338851 2339207 -146444265 + L1ME4a LINE L1 5743 6121 0 2497 80 10 0 chr11 2339246 2339548 -146443924 + AluSq SINE Alu 1 305 -8 805 122 0 43 chr11 2339687 2339796 -146443676 + AluJo/FLAM SINE Alu 1 104 -198 2371 87 0 0 chr11 2339796 2340084 -146443388 - AluSc SINE Alu -20 289 2 805 122 0 43 chr11 2340084 2340113 -146443359 + AluJo/FLAM SINE Alu 104 133 -169 215 255 0 0 chr11 2340114 2340165 -146443307 - MIR SINE MIR -65 143 93 315 228 206 15 chr11 2340709 2340845 -146442627 + MIR SINE MIR 1 162 -100 1653 88 5 0 chr11 2340847 2341051 -146442421 + AluSx SINE Alu 9 213 -99 815 174 158 10 chr11 2341295 2341592 -146441880 + Tigger2a DNA MER2_type 1 443 -1 2098 128 0 20 chr11 2341712 2342017 -146441455 + AluSx SINE Alu 1 299 -13 27 0 0 0 chr11 2342281 2342308 -146441164 + AT_rich Low_complexity Low_complexity 1 27 0 2032 138 0 10 chr11 2342308 2342605 -146440867 - AluSx SINE Alu -18 294 1 1058 164 6 0 chr11 2342887 2343052 -146440420 + AluSg/x SINE Alu 124 289 -20 1648 176 68 56 chr11 2343091 2343218 -146440254 - Charlie1 DNA MER1_type -349 2412 2288 2081 112 30 3 chr11 2343218 2343513 -146439959 - AluSx SINE Alu -9 303 1 1648 176 68 56 chr11 2343513 2343696 -146439776 - Charlie1 DNA MER1_type -473 2288 2093 1941 137 0 11 chr11 2343696 2344009 -146439463 - AluSx SINE Alu 0 312 14 1648 176 68 56 chr11 2344009 2344141 -146439331 - Charlie1 DNA MER1_type -668 2093 1964 2501 87 0 0 chr11 2344141 2344452 -146439020 - AluY SINE Alu 0 311 1 2253 114 3 0 chr11 2344490 2344787 -146438685 - AluSg SINE Alu -12 298 1 1202 141 5 5 chr11 2344787 2344985 -146438487 - AluYa5 SINE Alu -1 310 113 218 204 0 0 chr11 2345219 2345263 -146438209 + L2 LINE L2 3270 3313 0 344 98 33 0 chr11 2345341 2345402 -146438070 + (TTTAA)n Simple_repeat Simple_repeat 4 66 0 2386 88 0 7 chr11 2345412 2345718 -146437754 + AluSg SINE Alu 1 304 -6 2298 112 0 6 chr11 2345734 2346048 -146437424 + AluSq SINE Alu 2 313 0 734 216 6 28 chr11 2346053 2346229 -146437243 + MIR SINE MIR 91 262 0 2629 50 0 0 chr11 2346243 2346543 -146436929 + AluY SINE Alu 1 300 -11 2064 109 3 21 chr11 2346547 2346832 -146436640 + AluSx SINE Alu 3 310 0 253 0 0 0 chr11 2346832 2346860 -146436612 + (TAAA)n Simple_repeat Simple_repeat 1 128 0 228 163 0 0 chr11 2346929 2346972 -146436500 + T-rich Low_complexity Low_complexity 1 43 0 280 291 103 8 chr11 2347563 2347680 -146435792 + MIR SINE MIR 18 145 -63 2464 61 3 13 chr11 2347699 2347875 -146435597 - AluY SINE Alu -3 308 135 2335 84 10 3 chr11 2347875 2348173 -146435299 - AluSx SINE Alu -12 300 1 2464 61 3 13 chr11 2348173 2348307 -146435165 - AluY SINE Alu -176 135 1 2098 137 0 0 chr11 2348308 2348608 -146434864 - AluSx SINE Alu -12 300 1 2047 140 0 0 chr11 2348678 2348971 -146434501 - AluSx SINE Alu -19 293 1 2255 104 0 16 chr11 2349565 2349881 -146433591 - AluSx SINE Alu -1 311 1 208 221 233 0 chr11 2350050 2350136 -146433336 - MIR SINE MIR -1 261 156 1204 172 9 9 chr11 2350136 2350357 -146433115 - AluSg/x SINE Alu -7 305 85 680 384 0 0 chr11 2350457 2350608 -146432864 + C-rich Low_complexity Low_complexity 1 151 0 455 237 12 12 chr11 2350647 2350816 -146432656 + C-rich Low_complexity Low_complexity 1 169 0 24 32 0 0 chr11 2351343 2351374 -146432098 + AT_rich Low_complexity Low_complexity 1 31 0 306 79 0 4 chr11 2352522 2352737 -146430735 + AluSc SINE Alu 1 302 0 2111 109 44 7 chr11 2353704 2353997 -146429475 - AluSx SINE Alu -8 304 1 2423 86 0 6 chr11 2354122 2354435 -146429037 - AluY SINE Alu 0 311 1 2834 155 65 6 chr11 2354436 2354946 -146428526 - L1MB2 LINE L1 -41 6130 5591 373 264 51 34 chr11 2355225 2355363 -146428109 + MER102b DNA MER1_type 12 151 -190 1751 154 13 33 chr11 2355370 2355675 -146427797 - AluJo SINE Alu -13 299 1 528 316 123 35 chr11 2355924 2356329 -146427143 - L2 LINE L2 0 3272 2832 306 84 0 4 chr11 2358094 2358309 -146425163 + AluSc SINE Alu 1 301 0 2095 110 45 7 chr11 2359277 2359568 -146423904 - AluSx SINE Alu -10 302 1 2247 89 0 7 chr11 2359693 2359985 -146423487 - AluY SINE Alu 0 311 22 929 188 218 4 chr11 2360028 2360262 -146423210 + AluSg1 SINE Alu 1 284 -25 324 0 0 0 chr11 2360300 2360336 -146423136 + (CA)n Simple_repeat Simple_repeat 2 37 0 216 0 0 0 chr11 2360335 2360359 -146423113 + (TC)n Simple_repeat Simple_repeat 2 25 0 * 494 262 81 62 chr11 2361146 2361206 -146422266 - MIR SINE MIR -30 232 175 2247 104 3 7 chr11 2361206 2361505 -146421967 - AluSg SINE Alu -12 298 1 494 262 81 62 chr11 2361505 2361654 -146421818 - MIR SINE MIR -87 175 19 29 28 0 0 chr11 2361805 2361841 -146421631 + AT_rich Low_complexity Low_complexity 1 36 0 776 182 0 0 chr11 2361856 2361977 -146421495 - FLAM_C SINE Alu -22 121 1 1444 196 17 24 chr11 2362714 2363010 -146420462 + AluJo SINE Alu 2 295 -17 269 336 73 0 chr11 2363488 2363598 -146419874 + L2 LINE L2 3145 3262 -10 1823 127 0 68 chr11 2363857 2364181 -146419291 + AluSx SINE Alu 1 302 -10 1531 118 111 80 chr11 2365455 2365744 -146417728 + AluSx SINE Alu 1 298 -14 2146 137 3 3 chr11 2365808 2366114 -146417358 + AluSp SINE Alu 1 306 -7 37 0 0 0 chr11 2366272 2366309 -146417163 + AT_rich Low_complexity Low_complexity 1 37 0 183 200 100 0 chr11 2366799 2366849 -146416623 + MER5B DNA MER1_type 1 55 -123 849 223 46 65 chr11 2366858 2367118 -146416354 + AluJo SINE Alu 1 255 -57 218 382 18 0 chr11 2367134 2367244 -146416228 + MER5B DNA MER1_type 50 161 -17 2302 103 0 3 chr11 2367246 2367558 -146415914 + AluSx SINE Alu 1 311 -1 532 269 46 64 chr11 2367595 2367814 -146415658 + MER102b DNA MER1_type 127 341 0 1964 163 0 0 chr11 2367868 2368168 -146415304 + AluSx SINE Alu 1 300 -12 597 172 114 41 chr11 2368377 2368585 -146414887 - MIR SINE MIR -10 252 42 1940 125 35 3 chr11 2369690 2369979 -146413493 + AluSx SINE Alu 1 298 -14 2322 86 0 0 chr11 2370102 2370394 -146413078 + AluSc SINE Alu 1 292 -17 1859 103 52 7 chr11 2370711 2370982 -146412490 + AluSq SINE Alu 1 283 -30 180 0 0 0 chr11 2370985 2371005 -146412467 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2041 125 3 7 chr11 2371054 2371359 -146412113 + AluSp SINE Alu 1 304 -9 22 35 0 0 chr11 2371403 2371432 -146412040 + AT_rich Low_complexity Low_complexity 1 29 0 279 280 112 0 chr11 2371433 2371540 -146411932 + MIR SINE MIR 65 183 -79 1106 154 8 9 chr11 2371892 2372158 -146411314 - AluJb SINE Alu 0 312 2 1849 121 11 21 chr11 2372160 2372473 -146410999 - AluSc SINE Alu 0 310 1 1796 226 49 23 chr11 2372814 2373287 -146410185 + Charlie1a DNA MER1_type 2 486 -969 2432 71 0 0 chr11 2373289 2373585 -146409887 - AluY SINE Alu -15 296 1 1199 164 110 82 chr11 2373725 2374017 -146409455 + AluSx SINE Alu 13 312 0 2113 136 7 3 chr11 2374088 2374389 -146409083 + AluSx SINE Alu 1 302 -10 183 369 0 15 chr11 2374463 2374528 -146408944 + L2 LINE L2 3189 3252 -20 850 138 32 0 chr11 2375530 2375653 -146407819 + FLAM_C SINE Alu 1 127 -16 1079 192 14 23 chr11 2375691 2375910 -146407562 + AluJo SINE Alu 1 217 -95 1419 69 0 6 chr11 2376066 2376241 -146407231 + L1PA3 LINE L1 5974 6147 -8 245 330 0 31 chr11 2376337 2376434 -146407038 + MER5B DNA MER1_type 4 97 -81 1523 164 34 27 chr11 2377219 2377512 -146405960 + AluSx SINE Alu 1 295 -17 28 48 0 0 chr11 2377830 2377872 -146405600 + AT_rich Low_complexity Low_complexity 1 42 0 1612 191 0 4 chr11 2379697 2379974 -146403498 + AluJo SINE Alu 1 276 -36 5020 190 86 90 chr11 2380819 2381033 -146402439 - L1MB3 LINE L1 -174 6009 5796 480 104 15 0 chr11 2381033 2381100 -146402372 - U6 snRNA snRNA 0 107 40 5020 190 86 90 chr11 2381100 2381414 -146402058 - L1MB3 LINE L1 -387 5796 5482 1774 146 43 0 chr11 2381414 2381694 -146401778 - AluSg SINE Alu -18 292 1 5020 190 86 90 chr11 2381694 2381852 -146401620 - L1MB3 LINE L1 -701 5482 5325 1258 164 48 106 chr11 2381852 2382164 -146401308 - AluJo SINE Alu -14 298 5 5020 190 86 90 chr11 2382164 2382685 -146400787 - L1MB3 LINE L1 -858 5325 4804 1678 183 3 10 chr11 2382685 2382974 -146400498 + AluJb SINE Alu 1 287 -25 5020 190 86 90 chr11 2382974 2383272 -146400200 - L1MB3 LINE L1 -1379 4804 4507 1898 118 35 14 chr11 2383272 2383559 -146399913 - AluSx SINE Alu -19 293 1 5020 190 86 90 chr11 2383559 2384506 -146398966 - L1MB3 LINE L1 -1676 4507 3474 2232 129 3 0 chr11 2384515 2384825 -146398647 + AluSq SINE Alu 1 311 -2 190 130 0 43 chr11 2384829 2384875 -146398597 + (GGAAA)n Simple_repeat Simple_repeat 5 48 0 300 154 0 0 chr11 2384878 2384930 -146398542 - L1MB3 LINE L1 -2679 3467 3416 2301 102 0 0 chr11 2385099 2385439 -146398033 + AluSq SINE Alu 1 340 0 1549 177 53 14 chr11 2385541 2385824 -146397648 - AluJo SINE Alu -16 296 3 21 0 0 0 chr11 2385883 2385904 -146397568 + AT_rich Low_complexity Low_complexity 1 21 0 1538 169 59 0 chr11 2385969 2386266 -146397206 + AluJb SINE Alu 1 313 0 374 267 23 46 chr11 2386932 2387063 -146396409 - MIR SINE MIR -1 261 134 27 0 0 0 chr11 2387163 2387190 -146396282 + AT_rich Low_complexity Low_complexity 1 27 0 284 79 0 0 chr11 2387273 2387311 -146396161 - MER4E LTR ERV1 -75 691 654 295 247 105 57 chr11 2387315 2387562 -146395910 + L1ME4a LINE L1 5688 5946 -175 2034 132 6 19 chr11 2387574 2387885 -146395587 + AluSq SINE Alu 1 307 -6 1873 130 41 3 chr11 2387934 2388226 -146395246 + AluSx SINE Alu 1 303 -9 1024 167 36 50 chr11 2389235 2389456 -146394016 - AluJb SINE Alu -13 299 82 426 228 44 9 chr11 2389472 2389586 -146393886 + L1M4 LINE L1 2653 2770 -3376 718 270 48 89 chr11 2389691 2390202 -146393270 + L1M4 LINE L1 3085 3567 -2579 1291 177 106 39 chr11 2390202 2390485 -146392987 - AluJo SINE Alu -8 304 3 718 270 48 89 chr11 2390485 2390603 -146392869 + L1M4 LINE L1 3567 3688 -2458 360 207 94 47 chr11 2390603 2390730 -146392742 + FLAM_A SINE Alu 15 131 -2 392 296 8 8 chr11 2390834 2390966 -146392506 + L1MC4 LINE L1 6898 7029 -1013 703 195 9 0 chr11 2391010 2391123 -146392349 + FLAM_C SINE Alu 6 119 -24 1649 178 14 3 chr11 2391166 2391458 -146392014 + AluJo SINE Alu 1 295 -17 3400 259 59 18 chr11 2391466 2391877 -146391595 - L2 LINE L2 -248 3065 2672 2264 99 0 13 chr11 2391877 2392190 -146391282 + AluY SINE Alu 1 309 -2 3400 259 59 18 chr11 2392190 2392846 -146390626 - L2 LINE L2 -641 2672 1950 1584 154 46 39 chr11 2392859 2393165 -146390307 + AluJo SINE Alu 1 308 -4 2000 127 38 0 chr11 2393383 2393674 -146389798 + AluSx SINE Alu 1 302 -10 2020 124 3 26 chr11 2393781 2394087 -146389385 - AluSx SINE Alu -13 299 1 617 174 9 28 chr11 2394137 2394246 -146389226 + AluJb SINE Alu 195 301 -11 261 130 143 26 chr11 2394316 2394393 -146389079 + L1ME4a LINE L1 5994 6079 -42 2108 127 10 0 chr11 2394408 2394708 -146388764 + AluSx SINE Alu 1 303 -9 26 64 0 0 chr11 2394725 2394772 -146388700 + AT_rich Low_complexity Low_complexity 1 47 0 1386 138 51 0 chr11 2395169 2395386 -146388086 - MER46A DNA MER2_type 0 236 9 1119 114 0 6 chr11 2395521 2395679 -146387793 + AluSg/x SINE Alu 132 288 -22 1711 188 65 48 chr11 2396462 2396733 -146386739 - L1MB7 LINE L1 -18 6166 5884 2099 134 0 0 chr11 2396733 2397031 -146386441 - AluSq SINE Alu -11 302 5 1711 188 65 48 chr11 2397031 2397175 -146386297 - L1MB7 LINE L1 -300 5884 5744 198 200 73 55 chr11 2397267 2397322 -146386150 + L2 LINE L2 3222 3277 -36 2232 101 10 0 chr11 2397458 2397755 -146385717 - AluSq SINE Alu -12 301 2 305 308 149 34 chr11 2397836 2398044 -146385428 - MIR SINE MIR -21 241 10 304 322 49 0 chr11 2398101 2398207 -146385265 + MIR SINE MIR 34 148 -63 665 148 157 0 chr11 2398208 2398323 -146385149 + FLAM_C SINE Alu 1 133 0 32 43 0 0 chr11 2398749 2398795 -146384677 + AT_rich Low_complexity Low_complexity 1 46 0 353 276 35 55 chr11 2398903 2399102 -146384370 + L1ME LINE L1 5290 5484 -758 378 0 0 0 chr11 2399172 2399214 -146384258 + (TG)n Simple_repeat Simple_repeat 2 43 0 198 103 0 0 chr11 2399257 2399286 -146384186 + (TG)n Simple_repeat Simple_repeat 2 30 0 1410 182 4 30 chr11 2399364 2399500 -146383972 - AluJb SINE Alu -50 262 135 207 0 0 0 chr11 2399500 2399523 -146383949 + (TG)n Simple_repeat Simple_repeat 2 24 0 1410 182 4 30 chr11 2399523 2399655 -146383817 - AluJb SINE Alu -177 135 1 277 239 62 54 chr11 2399727 2399799 -146383673 + L1ME LINE L1 5698 5773 -348 1644 130 115 4 chr11 2399799 2400069 -146383403 + AluSx SINE Alu 1 300 -12 277 239 62 54 chr11 2400069 2400126 -146383346 + L1ME LINE L1 5773 5828 -293 180 0 0 0 chr11 2400745 2400765 -146382707 + (A)n Simple_repeat Simple_repeat 1 20 0 2307 98 0 7 chr11 2400767 2401073 -146382399 + AluY SINE Alu 1 304 -7 180 0 0 0 chr11 2401511 2401531 -146381941 + (A)n Simple_repeat Simple_repeat 1 20 0 1868 157 10 3 chr11 2401925 2402230 -146381242 + AluSx SINE Alu 6 312 0 235 312 185 25 chr11 2402248 2402405 -146381067 + L3 LINE CR1 1286 1467 -110 2091 111 10 0 chr11 2402681 2402970 -146380502 - AluSx SINE Alu -20 292 1 2564 244 149 13 chr11 2402971 2403917 -146379555 - L1M4 LINE L1 -1598 4548 3474 2232 129 3 0 chr11 2403926 2404236 -146379236 + AluSq SINE Alu 1 311 -2 190 130 0 43 chr11 2404240 2404286 -146379186 + (GGAAA)n Simple_repeat Simple_repeat 5 48 0 300 154 0 0 chr11 2404289 2404341 -146379131 - L1M4 LINE L1 -2679 3467 3416 2301 102 0 0 chr11 2404510 2404850 -146378622 + AluSq SINE Alu 1 340 0 240 35 0 0 chr11 2405426 2405455 -146378017 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1507 204 18 4 chr11 2405459 2405733 -146377739 - AluJb SINE Alu -34 278 1 546 187 19 0 chr11 2406093 2406200 -146377272 + FLAM_A SINE Alu 33 141 -1 207 69 0 0 chr11 2406505 2406534 -146376938 + (A)n Simple_repeat Simple_repeat 1 29 0 336 24 0 0 chr11 2406640 2406681 -146376791 + (TG)n Simple_repeat Simple_repeat 1 41 0 1891 136 0 7 chr11 2407088 2407367 -146376105 + AluSq SINE Alu 1 277 -36 258 156 0 0 chr11 2407367 2407412 -146376060 + GA-rich Low_complexity Low_complexity 1 45 0 1551 96 0 5 chr11 2407726 2407925 -146375547 + AluY SINE Alu 104 301 -10 261 172 23 58 chr11 2407939 2408026 -146375446 - MER113 DNA MER1_type? -435 86 3 2156 123 0 23 chr11 2408030 2408339 -146375133 + AluSg SINE Alu 1 302 -8 327 295 86 49 chr11 2408422 2408666 -146374806 + HAL1 LINE L1 2236 2488 -19 349 325 49 18 chr11 2409088 2409251 -146374221 + MIR SINE MIR 88 255 -7 367 273 136 8 chr11 2409251 2409383 -146374089 - MIR SINE MIR -100 162 14 23 33 0 0 chr11 2409414 2409444 -146374028 + AT_rich Low_complexity Low_complexity 1 30 0 617 204 74 0 chr11 2409902 2410010 -146373462 - FLAM_A SINE Alu -17 116 1 2583 68 3 0 chr11 2410246 2410553 -146372919 + AluSp SINE Alu 1 308 -5 2261 101 3 3 chr11 2410889 2411197 -146372275 + AluSx SINE Alu 1 308 -4 315 312 96 25 chr11 2411217 2411374 -146372098 + MIR3 SINE MIR 27 194 -14 1892 147 7 3 chr11 2411487 2411773 -146371699 + AluJb SINE Alu 14 300 -12 205 250 0 31 chr11 2411945 2412009 -146371463 - MIR SINE MIR -41 221 160 2301 91 10 0 chr11 2412083 2412379 -146371093 + AluSx SINE Alu 4 302 -10 1226 157 114 0 chr11 2412385 2412621 -146370851 + Tigger7 DNA MER2_type 2224 2486 -1 271 116 23 0 chr11 2412624 2412667 -146370805 - MIR SINE MIR -63 145 102 719 173 0 0 chr11 2412904 2413008 -146370464 - AluJb SINE Alu -13 299 196 956 179 0 6 chr11 2413031 2413219 -146370253 - FRAM SINE Alu 0 176 1 305 336 104 8 chr11 2413236 2413361 -146370111 + L2 LINE L2 3136 3272 0 363 23 0 0 chr11 2413807 2413851 -146369621 + (TG)n Simple_repeat Simple_repeat 2 45 0 659 224 195 9 chr11 2413981 2414191 -146369281 + MIR SINE MIR 14 262 0 586 211 0 24 chr11 2414550 2414673 -146368799 - L2 LINE L2 -2 3311 3192 188 33 0 33 chr11 2414779 2414809 -146368663 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1991 126 3 21 chr11 2414822 2415107 -146368365 - AluSx SINE Alu -32 280 1 350 163 128 0 chr11 2415109 2415195 -146368277 + MIR SINE MIR 112 208 -54 243 264 0 0 chr11 2415234 2415287 -146368185 - MIR SINE MIR -155 107 55 2381 100 3 0 chr11 2415579 2415890 -146367582 + AluSx SINE Alu 1 312 0 2020 138 7 3 chr11 2416042 2416346 -146367126 + AluSq SINE Alu 1 305 -8 2084 97 38 3 chr11 2416346 2416634 -146366838 + AluSx SINE Alu 1 298 -14 241 290 123 22 chr11 2417040 2417141 -146366331 - MIR SINE MIR -5 257 137 1788 186 3 3 chr11 2417141 2417452 -146366020 - AluJo SINE Alu -1 311 1 241 290 123 22 chr11 2417452 2417488 -146365984 - MIR SINE MIR -125 137 106 691 246 0 0 chr11 2417521 2417647 -146365825 - FLAM_A SINE Alu -7 126 1 214 338 196 0 chr11 2417653 2417786 -146365686 + L2 LINE L2 3106 3264 -8 239 261 185 25 chr11 2418255 2418374 -146365098 - L2 LINE L2 -14 3258 3121 281 309 132 0 chr11 2418469 2418605 -146364867 - MIR3 SINE MIR -10 198 45 2384 105 0 0 chr11 2418613 2418919 -146364553 - AluSc SINE Alu -3 306 1 788 183 15 8 chr11 2419367 2419498 -146363974 + FLAM_A SINE Alu 1 132 -1 195 281 67 11 chr11 2419731 2419820 -146363652 - L2 LINE L2 -160 3112 3019 1143 153 35 83 chr11 2419884 2420075 -146363397 + MER33 DNA MER1_type 13 185 -2400 2363 95 3 0 chr11 2420075 2420381 -146363091 + AluSg SINE Alu 1 307 -3 1143 153 35 83 chr11 2420381 2420502 -146362970 + MER33 DNA MER1_type 185 310 -14 1890 138 0 0 chr11 2420517 2420792 -146362680 + AluSx SINE Alu 1 275 -37 243 289 106 10 chr11 2420939 2421043 -146362429 - MIR SINE MIR -56 206 93 276 273 64 55 chr11 2421068 2421178 -146362294 + L2 LINE L2 3160 3270 -2 314 286 114 71 chr11 2421375 2421630 -146361842 + L1M2 LINE L1 834 1099 -5750 1589 119 171 4 chr11 2422653 2422904 -146360568 + AluSg1 SINE Alu 1 293 -16 751 104 0 0 chr11 2422932 2423028 -146360444 + AluSq/x SINE Alu 41 136 -177 2819 19 0 0 chr11 2423396 2423706 -146359766 + AluYb8 SINE Alu 1 310 -8 1892 107 21 11 chr11 2423712 2424012 -146359460 + AluSq SINE Alu 1 303 0 308 287 151 12 chr11 2424214 2424465 -146359007 + L1ME LINE L1 5501 5786 -335 1106 191 109 4 chr11 2424535 2424765 -146358707 - AluJb SINE Alu -58 254 1 486 263 116 13 chr11 2424868 2424993 -146358479 + MER112 DNA MER1_type 1 112 -148 1343 221 13 39 chr11 2424993 2425305 -146358167 - AluJo SINE Alu -8 304 1 486 263 116 13 chr11 2425305 2425411 -146358061 + MER112 DNA MER1_type 112 256 -4 2251 94 3 0 chr11 2425446 2425744 -146357728 + AluSp SINE Alu 1 299 -14 1577 199 0 0 chr11 2425946 2426237 -146357235 + AluJo SINE Alu 1 291 -21 1853 108 123 0 chr11 2426265 2426525 -146356947 + AluSg SINE Alu 1 292 -8 1996 132 4 0 chr11 2426605 2426923 -146356549 + AluSx SINE Alu 1 319 0 1959 121 3 70 chr11 2428002 2428333 -146355139 + AluSx SINE Alu 1 309 -3 2081 131 13 0 chr11 2428514 2428820 -146354652 + AluSg SINE Alu 1 310 0 2004 154 0 0 chr11 2429027 2429333 -146354139 + AluSx SINE Alu 1 306 -6 1843 141 3 36 chr11 2429544 2429850 -146353622 + AluSx SINE Alu 3 298 -14 2134 113 0 3 chr11 2430052 2430344 -146353128 + AluSg1 SINE Alu 1 291 -18 1804 105 0 0 chr11 2430864 2431092 -146352380 - AluSx SINE Alu -84 228 1 308 302 224 34 chr11 2431498 2431766 -146351706 - HAL1 LINE L1 -766 1741 1423 1839 138 22 0 chr11 2432028 2432304 -146351168 + AluJb SINE Alu 1 282 -30 212 0 36 0 chr11 2432309 2432337 -146351135 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2373 100 0 0 chr11 2432339 2432639 -146350833 + AluSq SINE Alu 2 301 -12 721 201 13 13 chr11 2432706 2432855 -146350617 + MER106A DNA MER1_type 33 181 -55 2283 92 0 13 chr11 2432857 2433172 -146350300 + AluY SINE Alu 1 311 0 1907 113 0 0 chr11 2433328 2433584 -146349888 + AluSq SINE Alu 5 260 -53 287 61 41 0 chr11 2433595 2433644 -146349828 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 1981 115 14 21 chr11 2434136 2434445 -146349027 + AluSx SINE Alu 1 307 0 240 128 0 0 chr11 2434521 2434560 -146348912 + L1ME4a LINE L1 6060 6098 -23 900 220 36 0 chr11 2434661 2434829 -146348643 - FAM SINE Alu -1 174 1 403 151 0 0 chr11 2434858 2434911 -146348561 + Alu SINE Alu 2 54 -255 200 106 15 61 chr11 2434933 2434999 -146348473 + (CAAAAA)n Simple_repeat Simple_repeat 1 63 0 1474 200 79 10 chr11 2435818 2436153 -146347319 + L1MB7 LINE L1 5817 6177 -7 1756 139 18 14 chr11 2436166 2436299 -146347173 + AluSx SINE Alu 1 132 -181 2140 74 7 11 chr11 2436299 2436619 -146346853 + AluSg SINE Alu 1 319 0 1756 139 18 14 chr11 2436619 2436796 -146346676 + AluSx SINE Alu 132 313 0 2231 97 0 39 chr11 2436935 2437243 -146346229 - AluSq SINE Alu -17 296 1 288 301 192 13 chr11 2437956 2438112 -146345360 - MIR SINE MIR -30 232 49 1810 122 70 0 chr11 2438390 2438660 -146344812 - AluSx SINE Alu -23 289 1 3503 176 113 47 chr11 2438800 2439406 -146344066 - L1MB7 LINE L1 0 6184 5619 2188 99 10 3 chr11 2439406 2439700 -146343772 - AluSg SINE Alu -14 296 1 3503 176 113 47 chr11 2439700 2440018 -146343454 - L1MB7 LINE L1 -565 5619 5323 936 213 6 6 chr11 2440018 2440187 -146343285 - FAM SINE Alu -6 169 1 3503 176 113 47 chr11 2440187 2440340 -146343132 - L1MB7 LINE L1 -861 5323 5182 2193 122 0 7 chr11 2440340 2440643 -146342829 + AluSx SINE Alu 1 301 -11 3503 176 113 47 chr11 2440643 2440915 -146342557 - L1MB7 LINE L1 -1002 5182 4929 1665 173 10 10 chr11 2440915 2441216 -146342256 + AluJb SINE Alu 1 301 -11 3503 176 113 47 chr11 2441216 2441230 -146342242 - L1MB7 LINE L1 -1255 4929 4917 2169 126 3 3 chr11 2441230 2441540 -146341932 + AluSx SINE Alu 1 310 -2 3503 176 113 47 chr11 2441540 2441599 -146341873 - L1MB7 LINE L1 -1267 4917 4663 715 214 81 39 chr11 2441592 2441782 -146341690 - L1MB7 LINE L1 -2162 3984 3781 * 2105 120 7 0 chr11 2441782 2442083 -146341389 - AluSg SINE Alu -7 303 1 715 214 81 39 chr11 2442083 2442126 -146341346 - L1MB7 LINE L1 -2365 3781 3741 1853 143 37 14 chr11 2442149 2442443 -146341029 - AluSx SINE Alu -11 301 1 242 286 13 91 chr11 2442817 2442962 -146340510 - MIR3 SINE MIR -52 156 22 2429 77 0 0 chr11 2442962 2443260 -146340212 + AluY SINE Alu 1 298 -13 222 128 0 0 chr11 2443575 2443614 -146339858 + (A)n Simple_repeat Simple_repeat 1 39 0 1421 196 3 35 chr11 2443965 2444276 -146339196 + AluJo SINE Alu 1 301 -11 816 151 0 0 chr11 2444301 2444420 -146339052 + FRAM SINE Alu 50 168 -8 1028 174 117 68 chr11 2444466 2444585 -146338887 + AluJb SINE Alu 1 113 -199 2089 119 3 7 chr11 2444585 2444879 -146338593 + AluSg1 SINE Alu 1 293 -16 1028 174 117 68 chr11 2444879 2444890 -146338582 + AluJb SINE Alu 113 122 -190 1825 117 80 4 chr11 2444890 2445164 -146338308 + AluSq SINE Alu 6 300 -13 1028 174 117 68 chr11 2445164 2445296 -146338176 + AluJb SINE Alu 122 277 -35 243 0 0 0 chr11 2445309 2445336 -146338136 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 258 32 0 0 chr11 2445370 2445401 -146338071 + (TG)n Simple_repeat Simple_repeat 2 32 0 635 262 116 66 chr11 2445586 2445678 -146337794 + L2 LINE L2 2458 2544 -769 2087 150 7 0 chr11 2445678 2445985 -146337487 - AluSx SINE Alu -3 309 1 635 262 116 66 chr11 2445985 2446568 -146336904 + L2 LINE L2 2544 3222 -91 190 0 32 32 chr11 2447055 2447086 -146336386 + (TAAAAA)n Simple_repeat Simple_repeat 1 31 0 324 158 174 31 chr11 2447251 2447358 -146336114 + L1ME3A LINE L1 5790 5910 -260 1880 152 14 0 chr11 2447360 2447650 -146335822 + AluSg SINE Alu 3 296 -14 1059 162 6 6 chr11 2447650 2447829 -146335643 + AluSg/x SINE Alu 134 312 0 1508 184 60 14 chr11 2447942 2448224 -146335248 + AluJb SINE Alu 1 295 -17 2254 105 0 43 chr11 2448940 2449263 -146334209 + AluSg SINE Alu 1 309 -1 2034 100 64 0 chr11 2449265 2449546 -146333926 + AluSx SINE Alu 1 299 -13 2254 114 0 19 chr11 2450070 2450387 -146333085 + AluSq SINE Alu 1 311 -2 2111 136 0 10 chr11 2450944 2451246 -146332226 - AluJb SINE Alu -10 302 4 2340 81 0 29 chr11 2451307 2451616 -146331856 - AluY SINE Alu -11 300 1 2476 82 0 0 chr11 2452167 2452470 -146331002 + AluSg SINE Alu 2 304 -6 2548 74 0 3 chr11 2452742 2453054 -146330418 + AluY SINE Alu 1 311 0 319 308 63 57 chr11 2453128 2453287 -146330185 + MER117 DNA MER1_type 38 197 0 21 0 0 0 chr11 2454156 2454177 -146329295 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr11 2454329 2454354 -146329118 + (A)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr11 2454633 2454654 -146328818 + AT_rich Low_complexity Low_complexity 1 21 0 1523 115 115 63 chr11 2455405 2455692 -146327780 - AluSg SINE Alu -8 302 1 1539 191 13 7 chr11 2455943 2456241 -146327231 + AluJb SINE Alu 1 300 -12 2427 77 3 0 chr11 2456252 2456550 -146326922 + AluSp SINE Alu 1 299 -14 1107 86 0 14 chr11 2456738 2456877 -146326595 + AluSq/x SINE Alu 1 137 -175 356 266 69 58 chr11 2456901 2457074 -146326398 - MER5B DNA MER1_type -1 177 3 2148 100 0 39 chr11 2457154 2457464 -146326008 + AluY SINE Alu 14 311 0 1605 196 0 50 chr11 2457546 2457690 -146325782 + AluJb SINE Alu 1 151 -161 1796 123 0 0 chr11 2457690 2457925 -146325547 + AluSx SINE Alu 1 235 -77 1605 196 0 50 chr11 2457925 2458102 -146325370 + AluJb SINE Alu 151 306 -6 259 262 0 0 chr11 2458197 2458258 -146325214 + L1MC5 LINE L1 7830 7890 -71 198 0 0 0 chr11 2458643 2458665 -146324807 + (TTCTC)n Simple_repeat Simple_repeat 3 24 0 210 37 0 0 chr11 2459852 2459879 -146323593 + (T)n Simple_repeat Simple_repeat 1 27 0 1228 186 97 14 chr11 2460001 2460280 -146323192 - AluJo SINE Alu -6 306 5 815 119 9 0 chr11 2461303 2461412 -146322060 - AluSg SINE Alu -200 110 1 2168 109 7 0 chr11 2461516 2461821 -146321651 + AluSq SINE Alu 1 307 0 650 257 39 6 chr11 2461857 2462036 -146321436 + MER20 DNA MER1_type 34 218 -1 2126 119 7 19 chr11 2462140 2462450 -146321022 - AluSx SINE Alu -1 311 6 1498 224 14 0 chr11 2462455 2462741 -146320731 - AluJb SINE Alu -22 290 1 1990 146 3 19 chr11 2462987 2463295 -146320177 + AluJb SINE Alu 1 303 -9 233 157 0 59 chr11 2463409 2463460 -146320012 - L2 LINE L2 -1 3271 3224 259 197 0 145 chr11 2464561 2464637 -146318835 + MIR3 SINE MIR 112 176 -32 216 171 0 24 chr11 2465311 2465352 -146318120 + (CCG)n Simple_repeat Simple_repeat 3 42 0 206 171 0 105 chr11 2465514 2465590 -146317882 + G-rich Low_complexity Low_complexity 5 72 0 2367 93 0 3 chr11 2466153 2466455 -146317017 - AluSx SINE Alu -7 305 5 2199 85 7 29 chr11 2466464 2466770 -146316702 - AluSx SINE Alu -13 299 1 1749 133 4 12 chr11 2467084 2467340 -146316132 + AluSq SINE Alu 1 254 -59 1557 192 17 10 chr11 2467515 2467807 -146315665 + AluJb SINE Alu 1 294 -18 2416 64 14 0 chr11 2468071 2468367 -146315105 - AluSq SINE Alu -13 300 1 222 238 155 0 chr11 2468367 2468451 -146315021 + MIR SINE MIR 163 259 -3 21 0 0 0 chr11 2469299 2469320 -146314152 + GC_rich Low_complexity Low_complexity 1 21 0 789 247 22 35 chr11 2469700 2469927 -146313545 + MIR SINE MIR 33 256 -6 417 190 46 51 chr11 2470074 2470205 -146313267 - MIR3 SINE MIR -14 194 60 832 222 6 6 chr11 2472933 2473095 -146310377 + FRAM SINE Alu 1 158 -18 269 350 80 25 chr11 2473652 2473852 -146309620 + L2 LINE L2 2977 3187 -85 1001 175 0 18 chr11 2473870 2474041 -146309431 - AluJo SINE Alu -13 299 132 1845 160 3 3 chr11 2474056 2474338 -146309134 - AluJb SINE Alu -30 282 1 313 291 12 0 chr11 2474784 2474870 -146308602 - L3 LINE CR1 -84 1493 1407 2299 119 0 0 chr11 2474899 2475211 -146308261 - AluSx SINE Alu 0 312 1 790 154 0 22 chr11 2475231 2475367 -146308105 - AluJo SINE Alu -169 133 1 1133 77 11 17 chr11 2475374 2475555 -146307917 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1529 145 0 4 chr11 2475581 2475808 -146307664 - AluSg/x SINE Alu -1 311 86 1868 97 4 8 chr11 2475959 2476207 -146307265 - AluSx SINE Alu -8 304 58 541 312 49 30 chr11 2476207 2476473 -146306999 - L3 LINE CR1 -379 1198 928 255 189 19 0 chr11 2477603 2477656 -146305816 + MIR SINE MIR 112 165 -97 1882 162 10 10 chr11 2478421 2478729 -146304743 + AluJb SINE Alu 4 311 -1 1892 93 0 16 chr11 2478734 2478981 -146304491 + AluSx SINE Alu 1 243 -69 204 214 29 57 chr11 2479501 2479571 -146303901 - L2 LINE L2 -182 3090 3023 188 289 0 0 chr11 2479659 2479704 -146303768 - L2 LINE L2 -569 2745 2701 1219 149 9 33 chr11 2479708 2479923 -146303549 - AluJb SINE Alu -18 294 85 248 321 102 27 chr11 2479924 2480111 -146303361 - L2 LINE L2 -601 2713 2513 234 128 0 0 chr11 2480480 2480519 -146302953 + (TG)n Simple_repeat Simple_repeat 2 40 0 2068 107 68 0 chr11 2481050 2481331 -146302141 + AluSq SINE Alu 1 300 -13 1077 160 24 0 chr11 2481331 2481500 -146301972 + AluSg/x SINE Alu 134 306 -6 626 209 31 0 chr11 2481501 2481630 -146301842 - MIR SINE MIR -82 180 48 2174 102 7 3 chr11 2482130 2482423 -146301049 + AluSx SINE Alu 2 295 -17 1609 159 53 40 chr11 2482433 2482734 -146300738 + AluJb SINE Alu 1 305 -7 2681 40 0 0 chr11 2482735 2483032 -146300440 + AluY SINE Alu 1 297 -14 1517 157 132 18 chr11 2483041 2483321 -146300151 + AluJb SINE Alu 1 312 0 2184 126 7 0 chr11 2483677 2483987 -146299485 - AluSx SINE Alu 0 312 1 283 301 8 38 chr11 2486592 2486725 -146296747 + MIR3 SINE MIR 53 181 -27 976 266 40 4 chr11 2489040 2489275 -146294197 + MIR SINE MIR 2 248 -14 2577 54 10 0 chr11 2489275 2489572 -146293900 - AluY SINE Alu -11 300 1 976 266 40 4 chr11 2489572 2489588 -146293884 + MIR SINE MIR 248 262 0 2320 113 7 0 chr11 2489902 2490203 -146293269 - AluSx SINE Alu -9 303 1 2444 81 0 7 chr11 2490403 2490699 -146292773 - AluSg SINE Alu -16 294 1 633 244 42 63 chr11 2490856 2491025 -146292447 + MIR SINE MIR 18 182 -80 2113 139 0 3 chr11 2491025 2491327 -146292145 + AluJo SINE Alu 1 301 -11 633 244 42 63 chr11 2491327 2491395 -146292077 + MIR SINE MIR 182 250 -12 200 216 0 0 chr11 2492066 2492103 -146291369 + (TG)n Simple_repeat Simple_repeat 1 37 0 396 301 48 2 chr11 2492188 2492320 -146291152 + MIR SINE MIR 21 156 -74 465 244 125 24 chr11 2492846 2493014 -146290458 - MIR SINE MIR -57 205 21 367 202 19 77 chr11 2493041 2493145 -146290327 + MIR SINE MIR 68 165 -97 662 147 123 68 chr11 2493558 2493721 -146289751 + FAM SINE Alu 1 172 -3 1873 138 12 63 chr11 2493752 2494071 -146289401 - AluJb SINE Alu -9 303 1 601 245 18 31 chr11 2494201 2494364 -146289108 + MIR SINE MIR 41 201 -61 200 331 107 8 chr11 2494437 2494558 -146288914 + L2 LINE L2 2898 3030 -242 1978 130 0 0 chr11 2494608 2494870 -146288602 - AluSx SINE Alu -46 266 5 185 240 140 40 chr11 2496047 2496147 -146287325 + L2 LINE L2 2932 3041 -231 180 0 0 0 chr11 2496633 2496653 -146286819 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2370 99 0 13 chr11 2496868 2497180 -146286292 + AluSx SINE Alu 3 310 -2 2360 105 0 13 chr11 2497412 2497727 -146285745 + AluSx SINE Alu 1 311 -1 369 117 0 0 chr11 2500258 2500318 -146283154 + (CA)n Simple_repeat Simple_repeat 1 60 0 297 51 0 0 chr11 2500384 2500423 -146283049 + (CA)n Simple_repeat Simple_repeat 2 40 0 30 0 0 0 chr11 2501522 2501552 -146281920 + GC_rich Low_complexity Low_complexity 1 30 0 203 95 48 0 chr11 2501776 2501818 -146281654 + (CGGGG)n Simple_repeat Simple_repeat 5 48 0 1486 201 8 0 chr11 2552811 2553079 -146230393 + AluJo SINE Alu 5 274 -38 338 304 199 0 chr11 2553320 2553481 -146229991 - MIR SINE MIR -9 253 61 216 267 93 23 chr11 2554092 2554178 -146229294 + L2 LINE L2 3169 3260 -12 23 0 0 0 chr11 2554283 2554306 -146229166 + AT_rich Low_complexity Low_complexity 1 23 0 188 268 18 0 chr11 2554315 2554371 -146229101 - MIR SINE MIR -21 241 185 21 0 0 0 chr11 2554375 2554396 -146229076 + AT_rich Low_complexity Low_complexity 1 21 0 466 274 43 0 chr11 2554422 2554539 -146228933 + L2 LINE L2 3187 3308 -5 363 239 197 28 chr11 2554569 2554711 -146228761 - MIR SINE MIR -84 178 13 13439 24 1 2 chr11 2554834 2556387 -146227085 - L1P LINE L1 -1043 5103 3553 1863 88 4 0 chr11 2556383 2556632 -146226840 - L1P LINE L1 -5671 475 226 * 1002 171 64 0 chr11 2556758 2556945 -146226527 + L1MB5 LINE L1 5968 6166 -8 1726 193 7 0 chr11 2557096 2557392 -146226080 + AluJb SINE Alu 3 300 -12 731 278 179 34 chr11 2557425 2557871 -146225601 - MLT1J LTR MaLR 0 511 1 2214 112 3 3 chr11 2557916 2558210 -146225262 + AluSq SINE Alu 1 294 -19 206 227 0 23 chr11 2558277 2558321 -146225151 + GA-rich Low_complexity Low_complexity 4 46 0 759 258 32 24 chr11 2558893 2559141 -146224331 - MIR SINE MIR -1 261 12 430 293 50 14 chr11 2559409 2559549 -146223923 + MIR SINE MIR 3 147 -115 2595 68 0 0 chr11 2559685 2560071 -146223401 + AluY SINE Alu 1 386 0 201 147 0 0 chr11 2560419 2560453 -146223019 + (CA)n Simple_repeat Simple_repeat 1 34 0 2261 114 0 3 chr11 2560520 2560819 -146222653 + AluSx SINE Alu 1 298 -14 274 269 0 13 chr11 2560949 2561027 -146222445 - L2 LINE L2 0 3272 3196 419 223 79 114 chr11 2561146 2561348 -146222124 - LTR67 LTR ERVL -9 548 354 786 257 31 9 chr11 2561928 2562150 -146221322 - MIR SINE MIR -2 260 34 185 232 152 18 chr11 2562613 2562725 -146220747 + L2 LINE L2 2842 2968 -304 313 264 79 36 chr11 2563542 2563682 -146219790 - MIR3 SINE MIR -42 166 21 237 235 98 10 chr11 2564199 2564301 -146219171 - MIR SINE MIR -4 258 148 12806 95 6 8 chr11 2564413 2566209 -146217263 - L1P LINE L1 -4355 1791 1 1023 207 14 33 chr11 2566414 2566463 -146217009 + MER58A DNA MER1_type 4 52 -2368 1628 158 62 11 chr11 2566463 2566735 -146216737 - AluJo SINE Alu -26 286 1 1023 207 14 33 chr11 2566735 2566898 -146216574 + MER58A DNA MER1_type 52 212 -12 199 409 36 0 chr11 2566900 2567010 -146216462 + L2 LINE L2 2868 2981 -291 438 243 181 33 chr11 2567472 2567682 -146215790 + MIR SINE MIR 2 242 -20 491 60 0 0 chr11 2568607 2568674 -146214798 - AluY SINE Alu -4 305 239 1737 77 0 0 chr11 2568674 2568882 -146214590 - AluY SINE Alu -103 208 1 2419 82 0 0 chr11 2569800 2570094 -146213378 - AluY SINE Alu -17 294 1 269 274 69 20 chr11 2570104 2570206 -146213266 + MIR SINE MIR 124 230 -32 1799 257 75 17 chr11 2570227 2571003 -146212469 - L2 LINE L2 -1 3312 2488 520 264 54 0 chr11 2571007 2571155 -146212317 - L2 LINE L2 -968 2346 2191 3237 110 15 25 chr11 2571372 2571892 -146211580 + L1MA6 LINE L1 5768 6282 -18 301 115 0 0 chr11 2571915 2571967 -146211505 - AluJo SINE Alu 0 302 251 1200 175 0 5 chr11 2571967 2572167 -146211305 - AluJo SINE Alu -113 199 1 46 33 0 0 chr11 2572196 2572256 -146211216 + AT_rich Low_complexity Low_complexity 1 60 0 1418 273 21 40 chr11 2572642 2572894 -146210578 - L2 LINE L2 -275 3038 2783 2198 102 3 38 chr11 2572894 2573072 -146210400 - AluSp SINE Alu -11 302 138 2951 6 0 9 chr11 2573072 2573391 -146210081 - AluYb8 SINE Alu -2 316 1 2198 102 3 38 chr11 2573391 2573525 -146209947 - AluSp SINE Alu -175 138 1 1418 273 21 40 chr11 2573525 2573798 -146209674 - L2 LINE L2 -530 2783 2524 1388 129 19 5 chr11 2574355 2574564 -146208908 + L1P3 LINE L1 10 221 -6240 327 267 199 17 chr11 2574963 2575172 -146208300 + MIR SINE MIR 10 247 -15 1693 133 13 63 chr11 2575559 2575780 -146207692 - MLT1A1 LTR MaLR 0 365 161 2396 100 0 0 chr11 2575780 2576091 -146207381 - AluY SINE Alu 0 311 1 1693 133 13 63 chr11 2576091 2576170 -146207302 - MLT1A1 LTR MaLR -204 161 80 999 136 7 7 chr11 2576176 2576331 -146207141 - LTR32 LTR ERVL 0 471 317 1879 182 32 15 chr11 2576410 2576751 -146206721 - LTR32 LTR ERVL -110 361 15 541 152 0 0 chr11 2576751 2576830 -146206642 - MLT1A1 LTR MaLR -295 79 1 272 277 54 36 chr11 2577059 2577171 -146206301 + L2 LINE L2 3158 3271 -1 542 283 61 100 chr11 2577204 2577565 -146205907 + L2 LINE L2 2924 3270 -2 487 250 123 26 chr11 2578113 2578315 -146205157 + MIR SINE MIR 38 262 0 2129 111 35 0 chr11 2579240 2579528 -146203944 + AluSx SINE Alu 1 298 -14 223 313 76 8 chr11 2579868 2579999 -146203473 - MIR SINE MIR -11 251 112 1876 154 0 39 chr11 2580093 2580399 -146203073 - AluJb SINE Alu -18 294 1 2398 126 3 15 chr11 2580699 2581040 -146202432 - MER1B DNA MER1_type 0 337 1 850 250 9 4 chr11 2581328 2581612 -146201860 - MIR SINE MIR -13 249 1 2422 94 3 0 chr11 2582248 2582555 -146200917 + AluSg SINE Alu 1 308 -2 263 340 108 30 chr11 2582683 2583015 -146200457 - L2 LINE L2 -395 2919 2562 481 306 128 37 chr11 2583131 2583726 -146199746 - L2 LINE L2 -979 2335 1687 271 349 0 0 chr11 2584594 2584680 -146198792 + L2 LINE L2 3186 3271 -1 351 0 0 0 chr11 2584789 2584828 -146198644 + (CA)n Simple_repeat Simple_repeat 2 40 0 235 167 0 62 chr11 2585287 2585335 -146198137 + MER58B DNA MER1_type 47 91 -250 1348 176 43 4 chr11 2586589 2586844 -146196628 + MER58B DNA MER1_type 76 340 -1 4290 154 18 72 chr11 2586868 2587778 -146195694 - L1MB8 LINE L1 -6 6172 5313 1812 174 31 3 chr11 2587796 2588123 -146195349 - L1PA16 LINE L1 -9 6157 5822 767 156 0 0 chr11 2588143 2588271 -146195201 - FRAM SINE Alu 0 40 1 355 316 151 34 chr11 2588642 2588993 -146194479 + L3 LINE CR1 948 1339 -238 1638 176 56 0 chr11 2589109 2589405 -146194067 + AluJb SINE Alu 1 311 0 2313 92 3 13 chr11 2590019 2590323 -146193149 - AluSq SINE Alu -12 301 1 2041 126 11 0 chr11 2590651 2590937 -146192535 + AluSx SINE Alu 1 289 -23 247 167 0 0 chr11 2591340 2591382 -146192090 + L3 LINE CR1 1533 1574 -3 264 231 0 46 chr11 2591702 2591767 -146191705 - MIR SINE MIR -64 144 83 429 221 65 26 chr11 2592528 2592682 -146190790 + MIR SINE MIR 79 238 -24 843 194 159 9 chr11 2593009 2593236 -146190236 + MIR SINE MIR 2 262 0 254 254 0 0 chr11 2593766 2593829 -146189643 - L1M4 LINE L1 -875 5271 5209 2487 53 3 10 chr11 2594130 2594433 -146189039 + AluY SINE Alu 1 301 -10 1314 223 70 76 chr11 2594436 2594640 -146188832 - L1M4 LINE L1 -1059 5087 4883 2182 134 0 0 chr11 2594640 2594939 -146188533 + AluSx SINE Alu 1 299 -13 1314 223 70 76 chr11 2594939 2595297 -146188175 - L1M4 LINE L1 -1263 4883 4525 227 30 0 30 chr11 2595297 2595330 -146188142 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 524 137 253 0 chr11 2595336 2595431 -146188041 - FLAM_C SINE Alu -14 119 1 1314 223 70 76 chr11 2595431 2595502 -146187970 - L1M4 LINE L1 -1626 4520 4450 2548 78 0 0 chr11 2595502 2595811 -146187661 - AluY SINE Alu -2 309 1 1314 223 70 76 chr11 2595811 2595882 -146187590 - L1M4 LINE L1 -1696 4450 4378 1994 234 81 47 chr11 2595882 2596428 -146187044 - Charlie7 DNA MER1_type -1125 1487 903 2209 100 0 0 chr11 2596428 2596736 -146186736 + AluSc SINE Alu 1 308 0 1994 234 81 47 chr11 2596736 2596978 -146186494 - Charlie7 DNA MER1_type -1709 903 671 586 197 87 104 chr11 2596995 2597178 -146186294 + MER58A DNA MER1_type 45 224 0 1185 268 138 53 chr11 2597181 2597804 -146185668 - Charlie7 DNA MER1_type -1936 676 1 1228 42 24 0 chr11 2598274 2598439 -146185033 + (GAAA)n Simple_repeat Simple_repeat 3 171 0 211 318 16 0 chr11 2598463 2598526 -146184946 + MIR SINE MIR 76 139 -69 2304 95 0 32 chr11 2598984 2599299 -146184173 + AluSx SINE Alu 1 305 -7 1022 166 37 0 chr11 2599958 2600121 -146183351 + AluJo SINE Alu 1 169 -143 1451 85 0 40 chr11 2600181 2600380 -146183092 + AluSg/x SINE Alu 105 295 -15 214 191 107 71 chr11 2600721 2600805 -146182667 - L2 LINE L2 0 3272 3186 718 178 0 0 chr11 2600985 2601092 -146182380 + FLAM_C SINE Alu 24 130 -13 192 47 47 23 chr11 2601839 2601882 -146181590 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 201 264 0 19 chr11 2601971 2602024 -146181448 - L2 LINE L2 -8 3264 3213 924 201 126 10 chr11 2602025 2602224 -146181248 + MER58A DNA MER1_type 2 223 -1 462 183 139 17 chr11 2602233 2602348 -146181124 + L1ME3 LINE L1 6027 6155 -7 2018 125 27 10 chr11 2602453 2602748 -146180724 + AluSx SINE Alu 7 306 -6 23 33 0 0 chr11 2602748 2602778 -146180694 + AT_rich Low_complexity Low_complexity 1 30 0 1254 100 0 0 chr11 2603310 2603470 -146180002 - AluSg/x SINE Alu -16 294 135 253 291 35 0 chr11 2603808 2603894 -146179578 - MIR SINE MIR -107 155 67 279 213 17 43 chr11 2604531 2604620 -146178852 - HERV16 LTR ERVL -2848 2148 2082 1222 131 159 19 chr11 2604655 2604901 -146178571 + L1MB7 LINE L1 5839 6118 -66 776 214 0 0 chr11 2604902 2605033 -146178439 + FLAM_C SINE Alu 2 132 -11 1539 188 3 14 chr11 2605071 2605358 -146178114 - AluJo SINE Alu -20 292 9 2373 76 3 0 chr11 2605657 2605946 -146177526 + AluSq SINE Alu 1 290 -23 1232 255 79 44 chr11 2606412 2606598 -146176874 + MLT1K LTR MaLR 3 181 -295 1775 140 12 64 chr11 2606598 2606927 -146176545 - AluJb SINE Alu 0 312 1 1232 255 79 44 chr11 2606927 2607195 -146176277 + MLT1K LTR MaLR 181 473 -3 2033 155 3 0 chr11 2607428 2607732 -146175740 + AluJb SINE Alu 1 305 -7 2200 87 13 23 chr11 2608274 2608410 -146175062 + AluSx SINE Alu 1 137 -175 2305 93 7 3 chr11 2608410 2608711 -146174761 + AluSq SINE Alu 1 302 -11 2200 87 13 23 chr11 2608711 2608874 -146174598 + AluSx SINE Alu 137 297 -15 4234 162 50 72 chr11 2608923 2609069 -146174403 + L1MB5 LINE L1 4967 5115 -1065 188 83 0 28 chr11 2609069 2609105 -146174367 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1785 144 4 11 chr11 2609111 2609381 -146174091 - AluSx SINE Alu -38 274 7 4234 162 50 72 chr11 2609381 2609464 -146174008 + L1MB5 LINE L1 5120 5203 -977 2524 56 0 7 chr11 2609464 2609767 -146173705 + AluY SINE Alu 1 301 -10 753 216 0 8 chr11 2609770 2609904 -146173568 + FLAM_C SINE Alu 1 133 0 4234 162 50 72 chr11 2609904 2610421 -146173051 + L1MB5 LINE L1 5205 5547 -633 2199 109 3 0 chr11 2610421 2610715 -146172757 + AluSc SINE Alu 1 295 -14 4234 162 50 72 chr11 2610715 2611335 -146172137 + L1MB5 LINE L1 5547 6180 0 36261 85 12 18 chr11 2611466 2614441 -146169031 + L1PA6 LINE L1 240 3163 -2991 2430 76 0 10 chr11 2614441 2614755 -146168717 + AluY SINE Alu 1 311 0 36261 85 12 18 chr11 2614755 2617730 -146165742 + L1PA6 LINE L1 3163 6154 0 468 137 86 26 chr11 2617760 2617877 -146165595 + MIR SINE MIR 69 192 -70 236 177 89 137 chr11 2617910 2617977 -146165495 + Charlie8 DNA MER1_type 36 96 -2321 2036 148 0 0 chr11 2617977 2618275 -146165197 + AluSx SINE Alu 1 298 -14 236 177 89 137 chr11 2618275 2618331 -146165141 + Charlie8 DNA MER1_type 96 153 -2264 1652 192 0 7 chr11 2618333 2618604 -146164868 + AluJb SINE Alu 1 269 -43 903 143 8 0 chr11 2618823 2618949 -146164523 - FLAM_A SINE Alu -2 131 5 254 309 52 10 chr11 2618981 2619078 -146164394 + L2 LINE L2 3122 3222 -50 3319 256 63 23 chr11 2619503 2620404 -146163068 + L1M4b LINE L1 11 947 -5912 1285 167 0 39 chr11 2620404 2620465 -146163007 + AluJo SINE Alu 84 146 -166 301 93 37 0 chr11 2620465 2620519 -146162953 + L1PA8 LINE L1 6117 6172 0 1285 167 0 39 chr11 2620519 2620690 -146162782 + AluJo SINE Alu 146 307 -5 2873 204 84 44 chr11 2620691 2621075 -146162397 + L1M4b LINE L1 945 1312 -5647 224 30 30 0 chr11 2621075 2621108 -146162364 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 2873 204 84 44 chr11 2621108 2621604 -146161868 + L1M4b LINE L1 1312 1787 -5172 1748 148 7 4 chr11 2621604 2621874 -146161598 + AluSx SINE Alu 37 307 -5 2873 204 84 44 chr11 2621874 2622352 -146161120 + L1M4b LINE L1 1787 2369 -4590 1227 259 100 92 chr11 2622352 2622667 -146160805 - L2 LINE L2 -31 3282 2971 2187 108 3 0 chr11 2622667 2622954 -146160518 - AluSx SINE Alu -24 288 1 1227 259 100 92 chr11 2622954 2623581 -146159891 - L2 LINE L2 -342 2971 2327 1509 186 13 16 chr11 2623581 2623888 -146159584 + L1M4 LINE L1 5027 5332 -814 1736 167 20 26 chr11 2623888 2624194 -146159278 - AluSx SINE Alu -6 306 3 24 32 0 0 chr11 2624202 2624233 -146159239 + AT_rich Low_complexity Low_complexity 1 31 0 1752 110 13 77 chr11 2624233 2624348 -146159124 + L1P4 LINE L1 5476 5597 -569 2602 57 3 6 chr11 2624348 2624662 -146158810 - AluSp SINE Alu 0 313 1 1752 110 13 77 chr11 2624662 2624846 -146158626 + L1P4 LINE L1 5597 5756 -410 1000 105 0 26 chr11 2624858 2625011 -146158461 + AluJo SINE Alu 1 149 -163 21 0 0 0 chr11 2625133 2625154 -146158318 + AT_rich Low_complexity Low_complexity 1 21 0 1599 173 26 4 chr11 2625412 2625683 -146157789 - AluJo SINE Alu -30 282 6 311 216 137 20 chr11 2626111 2626213 -146157259 - MIR SINE MIR -27 235 122 827 160 30 15 chr11 2626445 2626576 -146156896 + FLAM_A SINE Alu 1 133 0 212 0 36 0 chr11 2626603 2626631 -146156841 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1211 128 35 66 chr11 2626690 2626916 -146156556 - MER20 DNA MER1_type 0 219 1 804 123 0 0 chr11 2626957 2627071 -146156401 - AluSg SINE Alu -23 289 176 803 114 0 0 chr11 2627071 2627176 -146156296 - AluSg SINE Alu -205 105 1 2053 149 0 9 chr11 2627963 2628278 -146155194 - AluJo SINE Alu 0 312 1 261 367 43 7 chr11 2628278 2628417 -146155055 + MIR SINE MIR 92 235 -27 252 336 35 9 chr11 2628454 2628570 -146154902 - MIR SINE MIR -27 235 117 567 161 108 0 chr11 2628625 2628755 -146154717 + L1MB7 LINE L1 6041 6184 0 1957 144 0 13 chr11 2628877 2629182 -146154290 - AluSx SINE Alu -11 301 1 220 246 0 0 chr11 2629766 2629811 -146153661 + CT-rich Low_complexity Low_complexity 5 52 -9 2222 112 7 0 chr11 2629811 2630114 -146153358 - AluSq SINE Alu -8 305 1 220 246 0 0 chr11 2630114 2630125 -146153347 + CT-rich Low_complexity Low_complexity 51 61 0 352 296 148 0 chr11 2630639 2630754 -146152718 + MIR SINE MIR 23 154 -108 287 333 8 0 chr11 2631236 2631368 -146152104 + (TG)n Simple_repeat Simple_repeat 2 134 0 452 308 39 19 chr11 2632491 2632699 -146150773 - L2 LINE L2 -196 3076 2865 30345 30 4 1 chr11 2632854 2637188 -146146284 + L1PA3 LINE L1 1811 6155 0 2602 119 45 31 chr11 2637467 2637847 -146145625 + MSTA LTR MaLR 1 389 -39 1954 144 10 13 chr11 2637847 2638159 -146145313 - AluSx SINE Alu -1 311 1 2602 119 45 31 chr11 2638159 2638197 -146145275 + MSTA LTR MaLR 389 425 -3 1771 135 114 3 chr11 2639500 2639797 -146143675 + MER7A DNA MER2_type 2 329 -17 3565 139 11 20 chr11 2639803 2640363 -146143109 - MER6A DNA MER2_type -50 555 1 2299 74 7 13 chr11 2640454 2640752 -146142720 + AluY SINE Alu 1 296 -15 2148 108 17 3 chr11 2640775 2641097 -146142375 + AluSx SINE Alu 1 312 0 190 246 53 18 chr11 2641473 2641530 -146141942 + L2 LINE L2 3004 3062 -210 858 140 22 0 chr11 2641938 2642074 -146141398 + AluJb SINE Alu 1 139 -173 233 318 149 0 chr11 2642278 2642385 -146141087 + L2 LINE L2 3191 3313 0 350 303 114 18 chr11 2642892 2643091 -146140381 + MIR3 SINE MIR 2 220 -42 1124 231 12 16 chr11 2643366 2643609 -146139863 + MIR SINE MIR 12 253 -9 1997 97 6 74 chr11 2643613 2643924 -146139548 + AluSx SINE Alu 1 290 -22 314 295 66 41 chr11 2643962 2644039 -146139433 + L2 LINE L2 3142 3225 -47 2423 155 77 10 chr11 2644039 2644440 -146139032 - MSTA LTR MaLR 0 428 1 314 295 66 41 chr11 2644440 2644484 -146138988 + L2 LINE L2 3225 3266 -6 418 302 26 0 chr11 2644520 2644636 -146138836 + MIR SINE MIR 75 193 -69 449 267 17 33 chr11 2645119 2645287 -146138185 + MIR3 SINE MIR 23 186 -22 305 283 0 33 chr11 2645287 2645379 -146138093 + MIR3 SINE MIR 83 171 -37 375 302 142 12 chr11 2645632 2645801 -146137671 + MIR3 SINE MIR 1 191 -17 512 299 92 5 chr11 2646073 2646257 -146137215 + MIR SINE MIR 29 228 -34 201 301 14 14 chr11 2646797 2646870 -146136602 - MIR SINE MIR -98 164 92 216 176 0 0 chr11 2647158 2647192 -146136280 - L2 LINE L2 -14 3299 3266 798 186 37 12 chr11 2647275 2647436 -146136036 - MIR SINE MIR -17 245 81 622 301 37 50 chr11 2647423 2647722 -146135750 - L2 LINE L2 -149 3123 2829 * 2347 172 161 47 chr11 2647987 2648452 -146135020 - L1MD2 LINE L1 -1 6358 5805 2428 84 0 0 chr11 2648452 2648749 -146134723 - AluSg SINE Alu -13 297 1 2347 172 161 47 chr11 2648749 2648898 -146134574 - L1MD2 LINE L1 -554 5805 5674 311 339 42 52 chr11 2648899 2648944 -146134528 - L2 LINE L2 -563 2751 2707 1934 156 7 13 chr11 2648944 2649245 -146134227 - AluJo SINE Alu -13 299 1 311 339 42 52 chr11 2649245 2649391 -146134081 - L2 LINE L2 -607 2707 2562 1738 134 76 0 chr11 2650445 2650728 -146132744 + AluJb SINE Alu 1 303 0 201 312 43 35 chr11 2651857 2651998 -146131474 + MIR3 SINE MIR 50 191 -17 1884 176 23 0 chr11 2652087 2652388 -146131084 - AluJb SINE Alu -4 308 1 517 267 74 57 chr11 2652663 2652959 -146130513 - L2 LINE L2 -1 3312 3012 2924 190 58 18 chr11 2653071 2653697 -146129775 + L1ME2 LINE L1 5504 6154 -10 660 201 44 87 chr11 2653711 2653953 -146129519 + L1ME3 LINE L1 5915 6154 -12 648 158 17 0 chr11 2654010 2654130 -146129342 - MER5B DNA MER1_type -56 122 1 47 0 0 0 chr11 2654205 2654252 -146129220 + AT_rich Low_complexity Low_complexity 1 47 0 337 157 0 0 chr11 2654252 2654303 -146129169 - MER66A LTR ERV1 -140 338 288 363 323 16 0 chr11 2654361 2654485 -146128987 - L2 LINE L2 -468 2846 2721 222 284 203 42 chr11 2654630 2654940 -146128532 - L2 LINE L2 -800 2514 2155 1016 184 6 6 chr11 2654990 2655164 -146128308 + AluJb SINE Alu 138 311 -1 737 193 42 31 chr11 2655211 2655403 -146128069 - L2 LINE L2 0 3313 3120 2063 115 0 7 chr11 2655566 2655869 -146127603 - AluSg SINE Alu 0 301 1 1429 199 10 34 chr11 2655886 2656177 -146127295 - AluJo SINE Alu -28 284 1 2339 93 0 0 chr11 2656187 2656476 -146126996 - AluSc SINE Alu -20 289 1 748 185 15 0 chr11 2656540 2656670 -146126802 + FLAM_A SINE Alu 1 132 -1 1965 86 90 21 chr11 2657000 2657279 -146126193 + AluSq SINE Alu 1 298 -15 182 105 26 0 chr11 2657730 2657768 -146125704 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 5676 187 70 8 chr11 2658032 2659265 -146124207 + Charlie1a DNA MER1_type 1 1309 -146 1736 149 76 4 chr11 2659322 2659597 -146123875 - AluJo SINE Alu -17 295 1 1724 180 20 10 chr11 2659768 2660063 -146123409 - AluJb SINE Alu -14 298 1 474 263 26 0 chr11 2660164 2660278 -146123194 + L2 LINE L2 3192 3308 -5 216 0 0 0 chr11 2660604 2660628 -146122844 + (TTA)n Simple_repeat Simple_repeat 2 25 0 682 208 21 0 chr11 2661630 2661774 -146121698 - MIR SINE MIR -48 214 68 381 286 43 19 chr11 2661832 2661993 -146121479 - MIR SINE MIR -90 172 8 239 344 43 0 chr11 2662031 2662124 -146121348 + L2 LINE L2 3206 3302 -11 2406 72 3 3 chr11 2662323 2662615 -146120857 - AluSx SINE Alu -19 293 2 245 313 63 46 chr11 2662932 2663083 -146120389 - MIR SINE MIR -78 184 33 234 302 47 35 chr11 2663446 2663532 -146119940 + MIR SINE MIR 37 123 -139 23 0 0 0 chr11 2664446 2664469 -146119003 + AT_rich Low_complexity Low_complexity 1 23 0 3841 143 46 113 chr11 2664470 2664724 -146118748 - L1MB5 LINE L1 -16 6158 5889 2255 101 0 3 chr11 2664724 2665031 -146118441 - AluY SINE Alu -5 306 1 2052 118 40 0 chr11 2665036 2665332 -146118140 - AluSx SINE Alu -4 308 1 3841 143 46 113 chr11 2665332 2665453 -146118019 - L1MB5 LINE L1 -289 5885 5757 2593 65 3 0 chr11 2665453 2665759 -146117713 - AluSp SINE Alu -6 307 1 3841 143 46 113 chr11 2665759 2665898 -146117574 - L1MB5 LINE L1 -417 5757 5610 507 80 13 0 chr11 2665898 2665973 -146117499 + L1PA10 LINE L1 6093 6168 0 3841 143 46 113 chr11 2665973 2666450 -146117022 - L1MB5 LINE L1 -564 5610 5221 503 331 90 53 chr11 2666488 2666704 -146116768 + L2 LINE L2 2899 3135 -137 2348 100 10 0 chr11 2666704 2667013 -146116459 - AluSq SINE Alu -1 312 1 503 331 90 53 chr11 2667013 2667152 -146116320 + L2 LINE L2 3135 3267 -5 499 257 169 8 chr11 2667237 2667474 -146115998 - L2 LINE L2 0 3313 3039 350 289 75 43 chr11 2667501 2667688 -146115784 + MIR SINE MIR 20 212 -50 530 167 0 0 chr11 2668062 2668146 -146115326 + AluSg/x SINE Alu 201 284 -26 2157 151 39 5 chr11 2668146 2668531 -146114941 + L1MB7 LINE L1 5769 6166 -18 1822 149 17 40 chr11 2668544 2668846 -146114626 - AluJb SINE Alu -17 295 1 1617 196 0 11 chr11 2668971 2669298 -146114174 - AluJo SINE Alu 0 324 1 2484 79 0 0 chr11 2669767 2670072 -146113400 + AluY SINE Alu 1 305 -6 2287 91 3 7 chr11 2670082 2670380 -146113092 + AluSc SINE Alu 1 297 -12 2330 93 0 7 chr11 2671047 2671348 -146112124 + AluY SINE Alu 1 299 -12 1925 121 0 54 chr11 2671900 2672213 -146111259 - AluSx SINE Alu -16 296 1 210 59 0 29 chr11 2672460 2672494 -146110978 - MIR SINE MIR -14 248 216 283 238 0 16 chr11 2672664 2672727 -146110745 - MIR SINE MIR -6 256 195 1346 122 0 0 chr11 2672730 2672910 -146110562 - AluSg/x SINE Alu -13 297 118 2292 93 0 3 chr11 2673077 2673368 -146110104 - AluSg SINE Alu -20 290 1 3280 144 69 29 chr11 2673639 2674006 -146109466 - L1PB4 LINE L1 -3 6153 5747 279 0 0 0 chr11 2674006 2674037 -146109435 + (TG)n Simple_repeat Simple_repeat 2 32 0 3280 144 69 29 chr11 2674037 2674322 -146109150 - L1PB4 LINE L1 -409 5747 5475 21 57 0 0 chr11 2674447 2674482 -146108990 + AT_rich Low_complexity Low_complexity 1 35 0 2562 88 3 3 chr11 2674648 2675001 -146108471 - L1PA13 LINE L1 -7 6156 5804 305 179 253 0 chr11 2675003 2675098 -146108374 + Charlie1 DNA MER1_type 2638 2756 -5 263 241 205 9 chr11 2675186 2675298 -146108174 - L2 LINE L2 0 3272 3139 324 333 109 10 chr11 2675562 2675763 -146107709 - MIR SINE MIR -36 226 6 1932 146 7 10 chr11 2676276 2676584 -146106888 - AluJb SINE Alu -5 307 1 1232 204 9 0 chr11 2676648 2676864 -146106608 + MER58A DNA MER1_type 1 218 -6 2190 105 0 3 chr11 2677283 2677604 -146105868 + AluSx SINE Alu 1 320 0 214 290 97 21 chr11 2677734 2677827 -146105645 + MIR SINE MIR 30 129 -79 288 317 120 7 chr11 2678183 2678325 -146105147 - MIR3 SINE MIR -8 200 43 315 327 72 33 chr11 2678689 2678842 -146104630 - L1ME LINE L1 -634 5487 5329 181 274 116 11 chr11 2679596 2679691 -146103781 - L2 LINE L2 -38 3275 3171 416 309 79 26 chr11 2679860 2680125 -146103347 + L3 LINE CR1 894 1172 -405 440 219 57 32 chr11 2680135 2680258 -146103214 - L2 LINE L2 -7 3306 3181 230 196 39 0 chr11 2680258 2680309 -146103163 + L3 LINE CR1 1206 1258 -319 372 262 248 10 chr11 2680376 2680578 -146102894 - MIR SINE MIR -12 250 1 362 281 39 46 chr11 2680591 2680744 -146102728 + L3 LINE CR1 1312 1463 -114 1907 144 11 0 chr11 2680764 2681070 -146102402 + AluJo SINE Alu 3 311 0 667 166 28 108 chr11 2682123 2682406 -146101066 - MER31-int LTR ERV1 -3250 1686 1313 927 126 0 53 chr11 2682653 2682804 -146100668 + FLAM_C SINE Alu 1 143 0 2433 57 0 0 chr11 2682807 2683125 -146100347 + AluY SINE Alu 1 318 0 2135 128 10 0 chr11 2684959 2685256 -146098216 - AluJb SINE Alu -12 300 1 1041 184 0 0 chr11 2685275 2685443 -146098029 - AluJ SINE Alu -14 298 131 21 0 0 0 chr11 2685448 2685469 -146098003 + AT_rich Low_complexity Low_complexity 1 21 0 889 133 0 15 chr11 2685953 2686088 -146097384 + FLAM_C SINE Alu 1 133 0 517 244 16 0 chr11 2686544 2686667 -146096805 - L2 LINE L2 0 3313 3189 202 241 38 25 chr11 2686748 2686827 -146096645 + MIR SINE MIR 113 192 -70 2077 134 3 16 chr11 2686891 2687204 -146096268 + AluSx SINE Alu 1 309 -3 3270 194 37 80 chr11 2687213 2688111 -146095361 + L1ME1 LINE L1 5290 6148 -18 838 148 16 0 chr11 2688225 2688353 -146095119 - AluJ SINE Alu -182 130 1 2117 134 0 0 chr11 2688362 2688654 -146094818 - AluSx SINE Alu -20 292 1 256 333 34 8 chr11 2688684 2688801 -146094671 + L2 LINE L2 3151 3270 -2 722 246 81 21 chr11 2688963 2689199 -146094273 + MIR SINE MIR 3 252 -10 448 309 152 10 chr11 2689216 2689420 -146094052 + MIR SINE MIR 20 252 -10 4703 130 241 44 chr11 2689678 2689694 -146093778 - L1 LINE L1 -761 5385 5373 1702 180 0 44 chr11 2689694 2690011 -146093461 - AluJb SINE Alu -9 303 1 4703 130 241 44 chr11 2690011 2690242 -146093230 - L1 LINE L1 -773 5373 5189 198 0 0 0 chr11 2690242 2690264 -146093208 + (TGG)n Simple_repeat Simple_repeat 1 22 0 4703 130 241 44 chr11 2690264 2690284 -146093188 - L1 LINE L1 -957 5189 5174 1898 124 0 0 chr11 2690284 2690534 -146092938 - AluSx SINE Alu -62 250 1 4703 130 241 44 chr11 2690534 2691158 -146092314 - L1 LINE L1 -972 5174 4674 1934 156 0 13 chr11 2691158 2691472 -146092000 + AluJb SINE Alu 1 310 -2 4703 130 241 44 chr11 2691472 2691766 -146091706 - L1 LINE L1 -1472 4674 3963 1022 261 81 32 chr11 2691774 2692146 -146091326 - MLT1G LTR MaLR -191 399 10 1864 146 14 4 chr11 2692157 2692471 -146091001 + AluSx SINE Alu 1 317 0 220 324 101 14 chr11 2692503 2692651 -146090821 + MIR SINE MIR 84 244 -18 240 300 0 22 chr11 2693359 2693449 -146090023 - L3 LINE CR1 -90 1487 1400 513 335 133 6 chr11 2693576 2693892 -146089580 - L3 LINE CR1 -343 1234 879 432 170 38 28 chr11 2695487 2695593 -146087879 - MIR SINE MIR -10 252 146 1258 296 38 81 chr11 2695596 2696310 -146087162 - MER21B LTR ERV1 -176 687 5 2346 93 0 16 chr11 2696411 2696722 -146086750 - AluSc SINE Alu -1 308 3 652 193 51 57 chr11 2747192 2747234 -146036238 - MER5B DNA MER1_type -2 176 135 1864 152 10 10 chr11 2747234 2747412 -146036060 - AluJb SINE Alu -9 303 123 261 0 0 0 chr11 2747412 2747441 -146036031 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1864 152 10 10 chr11 2747441 2747565 -146035907 - AluJb SINE Alu -188 124 1 652 193 51 57 chr11 2747565 2747698 -146035774 - MER5B DNA MER1_type -43 135 2 2332 98 0 13 chr11 2747907 2748214 -146035258 - AluSx SINE Alu -9 303 1 748 50 0 20 chr11 2748214 2748314 -146035158 - AluY SINE Alu -35 276 179 349 263 46 46 chr11 2748472 2748517 -146034955 + MLT1K LTR MaLR 384 428 -160 1978 155 0 13 chr11 2748517 2748821 -146034651 + AluJb SINE Alu 1 300 -12 349 263 46 46 chr11 2748821 2748950 -146034522 + MLT1K LTR MaLR 427 558 -30 35 0 0 22 chr11 2749095 2749112 -146034360 + AT_rich Low_complexity Low_complexity 1 17 -28 2395 89 0 0 chr11 2749112 2749404 -146034068 + AluSx SINE Alu 1 292 -20 35 0 0 22 chr11 2749404 2749432 -146034040 + AT_rich Low_complexity Low_complexity 17 45 0 23 33 0 0 chr11 2749813 2749843 -146033629 + AT_rich Low_complexity Low_complexity 1 30 0 1221 189 62 72 chr11 2750030 2750142 -146033330 + Tigger3(Golem) DNA MER2_type 2530 2642 -387 2267 102 14 0 chr11 2750142 2750437 -146033035 - AluSq SINE Alu -14 299 1 1221 189 62 72 chr11 2750437 2750546 -146032926 + Tigger3(Golem) DNA MER2_type 2642 2751 -278 2098 135 0 25 chr11 2750546 2750864 -146032608 - AluSx SINE Alu -2 310 1 1221 189 62 72 chr11 2750864 2751042 -146032430 + Tigger3(Golem) DNA MER2_type 2751 2926 -103 1865 99 56 49 chr11 2751800 2752104 -146031368 + AluSx SINE Alu 1 306 -6 667 280 59 57 chr11 2752224 2752596 -146030876 + L2 LINE L2 2941 3313 0 186 364 34 23 chr11 2752667 2752755 -146030717 + L2 LINE L2 3136 3224 -48 207 146 0 0 chr11 2752802 2752843 -146030629 + (GGAA)n Simple_repeat Simple_repeat 2 42 0 2123 110 0 0 chr11 2752990 2753263 -146030209 + AluSx SINE Alu 24 296 -16 282 246 0 0 chr11 2753442 2753499 -146029973 - MER8 DNA MER2_type -2 237 181 2859 117 27 27 chr11 2753514 2753960 -146029512 + Tigger2 DNA MER2_type 2273 2718 0 727 359 23 11 chr11 2754250 2754512 -146028960 + MLT1K LTR MaLR 17 281 -307 180 152 0 0 chr11 2754563 2754596 -146028876 + (TAA)n Simple_repeat Simple_repeat 3 35 0 872 253 21 17 chr11 2754598 2754839 -146028633 - MIR SINE MIR 0 262 21 441 0 0 0 chr11 2754844 2754893 -146028579 + (TG)n Simple_repeat Simple_repeat 2 50 0 8558 47 9 0 chr11 2755109 2756937 -146026535 + L1PA5 LINE L1 4300 6154 0 814 171 8 0 chr11 2756978 2757101 -146026371 - FLAM_C SINE Alu -19 124 1 1186 118 49 25 chr11 2757120 2757324 -146026148 + MER3 DNA MER1_type 1 209 0 1521 150 0 0 chr11 2757585 2757798 -146025674 + MER1B DNA MER1_type 1 213 -84 315 209 60 0 chr11 2757902 2757969 -146025503 + MER5B DNA MER1_type 108 178 0 1621 172 0 40 chr11 2758003 2758300 -146025172 - MLT1D LTR MaLR 0 505 221 274 167 91 91 chr11 2758297 2758363 -146025109 - MLT1D LTR MaLR -439 66 1 * 563 287 35 0 chr11 2758783 2758985 -146024487 - LTR33 LTR ERVL -7 514 306 458 281 97 42 chr11 2759033 2759250 -146024222 - LTR33 LTR ERVL -292 229 1 1166 162 15 0 chr11 2759279 2759477 -146023995 + L1MB1 LINE L1 5596 5796 -372 3570 111 4 132 chr11 2759477 2760018 -146023454 + MER4D LTR ERV1 1 427 -445 7775 28 17 0 chr11 2760018 2761010 -146022462 - L1PA3 LINE L1 0 6155 5160 3570 111 4 132 chr11 2761010 2761198 -146022274 + MER4D LTR ERV1 427 637 -235 658 175 0 0 chr11 2761349 2761463 -146022009 + AluSg/x SINE Alu 197 310 0 2013 131 37 6 chr11 2761463 2761791 -146021681 + L1MB1 LINE L1 5803 6140 -28 2261 85 0 7 chr11 2761791 2762074 -146021398 - AluSc SINE Alu -15 294 14 348 176 0 44 chr11 2763263 2763331 -146020141 - MER4D LTR ERV1 -455 417 353 4408 156 47 56 chr11 2763387 2764729 -146018743 + L1MB7 LINE L1 4860 6184 0 294 295 67 40 chr11 2764783 2765007 -146018465 - L2 LINE L2 -945 2369 2140 1236 208 0 21 chr11 2766008 2766248 -146017224 - AluJo SINE Alu -77 235 1 247 309 15 0 chr11 2766871 2766939 -146016533 + L2 LINE L2 3231 3299 -14 619 239 46 10 chr11 2767008 2767205 -146016267 + L1MEc LINE L1 1972 2175 -4221 195 42 0 0 chr11 2767385 2767409 -146016063 + (CA)n Simple_repeat Simple_repeat 1 24 0 2436 89 0 19 chr11 2767731 2768044 -146015428 + AluSx SINE Alu 1 307 -5 252 267 9 57 chr11 2768443 2768548 -146014924 + MIR SINE MIR 58 157 -105 876 206 85 45 chr11 2768557 2768685 -146014787 - MER2 DNA MER2_type -4 341 220 2532 57 0 0 chr11 2768685 2768982 -146014490 + AluY SINE Alu 1 297 -14 876 206 85 45 chr11 2768982 2769100 -146014372 - MER2 DNA MER2_type -125 220 85 4282 124 53 49 chr11 2769105 2769765 -146013707 - L1MA5A LINE L1 -4 6293 5628 1963 156 0 16 chr11 2769765 2770079 -146013393 - AluJo SINE Alu -3 309 1 4282 124 53 49 chr11 2770079 2770211 -146013261 - L1MA5A LINE L1 -669 5628 5498 1125 278 87 4 chr11 2770311 2770872 -146012600 - L1MEc LINE L1 -2597 3618 3011 1056 226 62 21 chr11 2771112 2771448 -146012024 - L1MEc LINE L1 -3183 3032 2683 6380 93 5 0 chr11 2771451 2772398 -146011074 - L1PA11 LINE L1 0 6174 5208 937 155 31 0 chr11 2772398 2772559 -146010913 + L1PA11 LINE L1 5060 5225 -921 1500 205 79 79 chr11 2772623 2772641 -146010831 - L1MEc LINE L1 -3539 2676 2659 2205 128 16 0 chr11 2772641 2772947 -146010525 - AluSx SINE Alu -1 311 1 1500 205 79 79 chr11 2772947 2773635 -146009837 - L1MEc LINE L1 -3556 2659 1972 2102 145 0 0 chr11 2773635 2773931 -146009541 - AluSx SINE Alu -16 296 1 1500 205 79 79 chr11 2773931 2773950 -146009522 - L1MEc LINE L1 -4243 1972 1983 356 104 117 13 chr11 2773950 2774027 -146009445 + L1PA4 LINE L1 6071 6155 0 1500 205 79 79 chr11 2774027 2774070 -146009402 - L1MEc LINE L1 -4231 1984 1942 884 227 38 55 chr11 2774066 2774304 -146009168 - L1MEc LINE L1 -6126 270 37 * 738 226 77 18 chr11 2774735 2774903 -146008569 + AluJo SINE Alu 120 297 -15 2275 103 3 0 chr11 2774903 2775194 -146008278 + AluSg SINE Alu 1 292 -18 2285 106 6 6 chr11 2776871 2777183 -146006289 + AluSx SINE Alu 1 312 0 16668 177 66 37 chr11 2777235 2779398 -146004074 - ERVL LTR ERVL -1994 3770 1472 2311 115 0 0 chr11 2779398 2779694 -146003778 - AluSx SINE Alu -16 296 1 16668 177 66 37 chr11 2779694 2780896 -146002576 - ERVL LTR ERVL -4292 1472 307 282 270 56 0 chr11 2780925 2781014 -146002458 + L1M4 LINE L1 842 935 -5607 1756 191 3 3 chr11 2781016 2781325 -146002147 + AluSx SINE Alu 1 309 -3 1735 199 57 14 chr11 2781326 2781814 -146001658 + L1M4 LINE L1 1094 1602 -4940 2091 109 0 4 chr11 2781916 2782191 -146001281 - AluSx SINE Alu -38 274 1 253 217 0 0 chr11 2782327 2782373 -146001099 - L2 LINE L2 -15 3257 3212 208 274 158 18 chr11 2783344 2783508 -145999964 + L2 LINE L2 3127 3313 0 526 267 11 59 chr11 2783571 2783727 -145999745 - MIR SINE MIR -80 182 35 1574 170 60 3 chr11 2783727 2784010 -145999462 - AluJo SINE Alu -13 299 1 526 267 11 59 chr11 2784010 2784040 -145999432 - MIR SINE MIR -227 35 5 1059 235 71 18 chr11 2784340 2784680 -145998792 + L2 LINE L2 2944 3301 -12 199 318 63 0 chr11 2784981 2785044 -145998428 - MIR SINE MIR -46 216 150 * 297 232 134 36 chr11 2785041 2785153 -145998319 + L2 LINE L2 3191 3313 0 295 266 128 9 chr11 2785153 2785262 -145998210 - MIR SINE MIR -66 142 21 340 222 136 25 chr11 2785694 2785856 -145997616 + Charlie7 DNA MER1_type 2427 2606 -6 2441 84 3 0 chr11 2785857 2786153 -145997319 + AluSc SINE Alu 1 297 -12 872 203 122 10 chr11 2786952 2787149 -145996323 + MER20 DNA MER1_type 1 219 0 1667 187 3 10 chr11 2787576 2787870 -145995602 - AluJb SINE Alu -16 296 5 2314 87 0 13 chr11 2787882 2788182 -145995290 - AluSx SINE Alu -6 306 11 1209 94 12 0 chr11 2788182 2788342 -145995130 - AluSg/x SINE Alu -5 305 144 1914 163 3 13 chr11 2788762 2789075 -145994397 - AluJo SINE Alu -2 310 1 593 194 0 0 chr11 2789322 2789430 -145994042 + FLAM_C SINE Alu 3 110 -33 2680 126 12 7 chr11 2789530 2789936 -145993536 - L1PA15 LINE L1 -267 5898 5488 1669 144 88 11 chr11 2789936 2790221 -145993251 - AluJo SINE Alu -5 307 1 331 335 33 42 chr11 2790336 2790551 -145992921 - L1M4 LINE L1 -2574 3572 3360 345 340 205 0 chr11 2791550 2791765 -145991707 - L2 LINE L2 0 3272 3014 331 257 108 12 chr11 2792813 2792962 -145990510 - MIR3 SINE MIR -63 145 3 796 231 74 10 chr11 2793705 2793908 -145989564 - MLT1C LTR MaLR 0 467 252 611 263 58 26 chr11 2793936 2794126 -145989346 - MLT1C LTR MaLR -309 196 1 183 287 69 30 chr11 2795170 2795271 -145988201 + L2 LINE L2 2949 3053 -219 28 0 0 0 chr11 2795753 2795781 -145987691 + AT_rich Low_complexity Low_complexity 1 28 0 2120 132 0 0 chr11 2795784 2796072 -145987400 + AluSx SINE Alu 1 288 -24 1289 131 62 4 chr11 2796075 2796319 -145987153 - L1MA4A LINE L1 -3 6300 6043 189 254 79 0 chr11 2797617 2797680 -145985792 - MIR3 SINE MIR -31 177 110 533 224 209 25 chr11 2797834 2798030 -145985442 + MIR SINE MIR 27 258 -4 402 257 58 134 chr11 2798049 2798310 -145985162 - L2 LINE L2 -2 3270 3030 358 322 115 0 chr11 2798331 2798514 -145984958 - MIR SINE MIR -39 223 20 554 215 76 0 chr11 2798662 2798806 -145984666 + MIR SINE MIR 2 156 -106 479 184 78 0 chr11 2798907 2799010 -145984462 + MIR SINE MIR 152 262 0 414 206 97 45 chr11 2799262 2799417 -145984055 + MER103 DNA DNA 2 164 -2 849 143 8 0 chr11 2799473 2799599 -145983873 + FLAM_C SINE Alu 1 127 -16 394 247 95 47 chr11 2799634 2799824 -145983648 + MIR SINE MIR 63 261 -1 189 74 0 0 chr11 2800293 2800320 -145983152 + (CGG)n Simple_repeat Simple_repeat 3 29 0 885 119 24 54 chr11 2801366 2801534 -145981938 - MLT1A2 LTR MaLR -208 166 4 252 301 75 11 chr11 2802567 2802660 -145980812 + MIR3 SINE MIR 12 110 -98 1114 222 15 11 chr11 2805132 2805402 -145978070 - L1ME1 LINE L1 -5 6161 5891 726 230 125 30 chr11 2805869 2806097 -145977375 - MIR SINE MIR -2 260 16 539 231 66 16 chr11 2806404 2806525 -145976947 - L2 LINE L2 0 3272 3146 513 264 129 11 chr11 2806778 2806956 -145976516 - MIR SINE MIR -51 211 13 289 347 50 8 chr11 2807015 2807136 -145976336 - L2 LINE L2 -5 3267 3142 752 247 36 46 chr11 2807494 2807596 -145975876 + MIR SINE MIR 40 141 -121 2508 56 0 0 chr11 2807596 2807898 -145975574 + AluY SINE Alu 1 302 -9 752 247 36 46 chr11 2807898 2808014 -145975458 + MIR SINE MIR 141 256 -6 322 294 52 59 chr11 2808174 2808310 -145975162 - MIR3 SINE MIR -40 168 34 268 413 0 14 chr11 2809736 2809874 -145973598 - L2 LINE L2 -218 3054 2919 205 182 23 0 chr11 2810670 2810714 -145972758 - L2 LINE L2 -1 3271 3227 235 303 61 0 chr11 2810876 2810942 -145972530 - L2 LINE L2 -215 3057 2988 3626 173 25 23 chr11 2811451 2812178 -145971294 + L1MB5 LINE L1 5447 6174 0 2292 158 88 40 chr11 2812178 2812348 -145971124 + L1MB7 LINE L1 5110 5270 -914 1987 137 0 7 chr11 2812348 2812654 -145970818 + AluSx SINE Alu 2 305 -7 2292 158 88 40 chr11 2812654 2813303 -145970169 + L1MB7 LINE L1 5270 6167 -17 907 139 7 13 chr11 2813313 2813464 -145970008 + Tigger1 DNA MER2_type 1 150 -2268 1340 124 14 5 chr11 2813467 2813676 -145969796 + Tigger1 DNA MER2_type 2208 2418 0 351 234 175 0 chr11 2813750 2813887 -145969585 + MIR3 SINE MIR 41 201 -7 207 285 118 4 chr11 2813981 2814095 -145969377 + MIR SINE MIR 65 192 -16 327 243 0 0 chr11 2814992 2815062 -145968410 + MIR SINE MIR 61 130 -132 320 303 34 25 chr11 2816442 2816561 -145966911 - L2 LINE L2 -20 3252 3133 825 145 23 8 chr11 2816575 2816706 -145966766 + FLAM_C SINE Alu 1 133 0 181 384 36 27 chr11 2817001 2817113 -145966359 + L2 LINE L2 2224 2336 -978 328 270 120 0 chr11 2817185 2817285 -145966187 - MIR SINE MIR -65 143 32 355 271 47 0 chr11 2817639 2817746 -145965726 + MIR SINE MIR 95 206 -56 484 316 199 3 chr11 2817941 2818223 -145965249 + L3 LINE CR1 342 678 -899 391 275 14 84 chr11 2820650 2820792 -145962680 + MIR3 SINE MIR 72 203 -5 187 303 0 30 chr11 2821272 2821338 -145962134 - L2 LINE L2 -665 2649 2586 180 0 0 0 chr11 2821357 2821377 -145962095 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1528 147 45 4 chr11 2821385 2821650 -145961822 - AluJo SINE Alu -36 276 1 307 270 141 38 chr11 2821705 2821890 -145961582 - MIR SINE MIR -25 237 34 198 0 0 0 chr11 2823059 2823081 -145960391 + (T)n Simple_repeat Simple_repeat 1 22 0 411 244 122 28 chr11 2823442 2823622 -145959850 + L2 LINE L2 3117 3313 0 2248 108 0 9 chr11 2824867 2825183 -145958289 + AluSq SINE Alu 1 313 0 2877 216 105 29 chr11 2825257 2826215 -145957257 - L1ME3 LINE L1 -2 6955 5894 1881 157 0 3 chr11 2826215 2826528 -145956944 + AluSx SINE Alu 1 312 0 2877 216 105 29 chr11 2826528 2826679 -145956793 - L1ME3 LINE L1 -1063 5894 5756 632 270 19 5 chr11 2826740 2826951 -145956521 - L1ME3 LINE L1 -3195 3746 3533 621 248 63 46 chr11 2826962 2827602 -145955870 + L1MEc LINE L1 2160 2694 -3452 * 821 260 99 40 chr11 2827596 2828129 -145955343 - L1ME3 LINE L1 -4887 1536 1279 1867 151 3 0 chr11 2828686 2828984 -145954488 - AluJo SINE Alu -13 299 1 417 310 89 47 chr11 2829707 2829920 -145953552 - L3 LINE CR1 0 1577 1356 332 263 58 12 chr11 2829908 2830023 -145953449 - MIR3 SINE MIR -111 97 1 * 226 296 102 0 chr11 2830186 2830284 -145953188 + MIR SINE MIR 57 164 -98 202 291 0 35 chr11 2830579 2830665 -145952807 + CT-rich Low_complexity Low_complexity 1 83 0 252 278 10 41 chr11 2830888 2830985 -145952487 + CT-rich Low_complexity Low_complexity 5 98 0 200 284 0 40 chr11 2833317 2833391 -145950081 + CT-rich Low_complexity Low_complexity 2 72 0 258 304 189 20 chr11 2833876 2834077 -145949395 - MIR SINE MIR -23 239 5 304 318 93 9 chr11 2834242 2834349 -145949123 - L1ME LINE L1 -370 5751 5636 333 100 0 0 chr11 2834907 2834957 -145948515 + (CCA)n Simple_repeat Simple_repeat 2 51 0 503 308 175 45 chr11 2835379 2835966 -145947506 - L2 LINE L2 -1 3271 2585 210 267 17 0 chr11 2836005 2836065 -145947407 - L2 LINE L2 -829 2485 2425 321 321 46 0 chr11 2836143 2836274 -145947198 - MIR SINE MIR -65 143 30 1695 134 52 14 chr11 2837167 2837458 -145946014 + AluJb SINE Alu 1 302 -10 303 296 91 61 chr11 2838406 2838538 -145944934 - MIR SINE MIR -46 216 81 244 313 6 47 chr11 2839112 2839446 -145944026 + CT-rich Low_complexity Low_complexity 1 320 0 483 173 67 0 chr11 2841546 2841650 -145941822 - MER53 DNA DNA 0 189 79 2052 116 0 0 chr11 2841740 2842042 -145941430 - AluSg SINE Alu -2 308 7 698 155 9 0 chr11 2842046 2842162 -145941310 - AluJo SINE Alu -175 137 21 214 205 179 0 chr11 2843529 2843607 -145939865 - MIR SINE MIR -51 211 120 189 262 143 12 chr11 2843934 2844018 -145939454 - L2 LINE L2 -9 3263 3169 1467 181 0 11 chr11 2844228 2844499 -145938973 - AluJo SINE Alu -24 288 21 22 56 0 0 chr11 2844827 2844863 -145938609 + AT_rich Low_complexity Low_complexity 1 36 0 822 106 8 15 chr11 2844863 2844995 -145938477 - FLAM_C SINE Alu -12 131 1 2040 117 23 3 chr11 2845192 2845491 -145937981 + AluSx SINE Alu 1 305 -7 21 82 0 0 chr11 2845648 2845697 -145937775 + AT_rich Low_complexity Low_complexity 1 49 0 1104 157 0 5 chr11 2845780 2845965 -145937507 - AluSg/x SINE Alu -12 300 117 840 181 0 0 chr11 2846458 2846629 -145936843 + CT-rich Low_complexity Low_complexity 4 174 0 277 345 48 21 chr11 2846661 2846806 -145936666 - L2 LINE L2 -34 3279 3131 824 277 59 57 chr11 2846831 2847203 -145936269 - L2 LINE L2 0 3313 2941 1843 104 49 46 chr11 2847323 2847630 -145935842 - AluSx SINE Alu -4 308 1 202 280 133 0 chr11 2848400 2848475 -145934997 - L2 LINE L2 0 3272 3188 1553 140 0 4 chr11 2848523 2848759 -145934713 - MER46A DNA MER2_type 0 236 2 216 250 0 0 chr11 2848815 2848855 -145934617 - MIR SINE MIR -7 255 216 361 257 12 70 chr11 2849223 2849394 -145934078 - L2 LINE L2 -151 3162 3002 380 299 39 74 chr11 2849396 2849503 -145933969 - L2 LINE L2 -415 2899 2790 2016 110 0 42 chr11 2849503 2849813 -145933659 - AluSq SINE Alu -16 297 1 380 299 39 74 chr11 2849813 2849936 -145933536 - L2 LINE L2 -524 2790 2677 2340 55 20 0 chr11 2850564 2850856 -145932616 + AluSx SINE Alu 1 298 -14 387 276 178 18 chr11 2851517 2851680 -145931792 - MIR3 SINE MIR -6 202 14 645 135 31 0 chr11 2851757 2851853 -145931619 + AluJb SINE Alu 10 108 -204 1387 160 30 38 chr11 2851854 2852117 -145931355 - AluSx SINE Alu -51 261 1 1006 178 35 41 chr11 2852119 2852316 -145931156 + AluJb SINE Alu 106 301 -11 333 214 101 11 chr11 2852786 2852875 -145930597 + MIR SINE MIR 84 180 -82 1584 191 0 20 chr11 2853422 2853720 -145929752 - AluJo SINE Alu -20 292 1 1521 142 108 54 chr11 2853758 2854054 -145929418 - AluJo SINE Alu 0 312 1 410 265 12 0 chr11 2854069 2854152 -145929320 - FLAM_A SINE Alu -58 84 1 704 185 0 0 chr11 2854506 2854625 -145928847 + AluJb SINE Alu 1 119 -193 813 114 44 38 chr11 2854765 2854923 -145928549 - AluY SINE Alu -152 159 1 195 160 40 80 chr11 2855001 2855051 -145928421 - L2 LINE L2 -4 3309 3262 437 310 90 29 chr11 2855540 2855850 -145927622 - L1MC4a LINE L1 -1923 5885 5557 2480 72 0 0 chr11 2856048 2856353 -145927119 + AluY SINE Alu 1 305 -6 28 29 0 0 chr11 2856936 2856971 -145926501 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr11 2857323 2857352 -145926120 + AT_rich Low_complexity Low_complexity 1 29 0 420 269 169 8 chr11 2857728 2857858 -145925614 + MIR SINE MIR 1 151 -111 508 157 0 0 chr11 2857892 2857981 -145925491 - AluSg/x SINE Alu -20 290 202 414 56 0 0 chr11 2858035 2858089 -145925383 + Alu SINE Alu 248 301 -10 227 229 84 36 chr11 2858103 2858186 -145925286 - MIR SINE MIR -36 226 140 213 308 0 39 chr11 2858180 2858284 -145925188 + MIR SINE MIR 162 261 -1 * 495 157 0 12 chr11 2858389 2858472 -145925000 + FLAM SINE Alu 42 123 -20 1670 79 0 19 chr11 2858511 2858727 -145924745 + AluY SINE Alu 85 296 -15 528 116 21 73 chr11 2859549 2859665 -145923807 + L1MB8 LINE L1 6049 6150 -34 2003 128 7 10 chr11 2859665 2859961 -145923511 - AluSx SINE Alu -15 297 3 528 116 21 73 chr11 2859961 2859995 -145923477 + L1MB8 LINE L1 6150 6184 0 240 413 9 0 chr11 2859996 2860105 -145923367 - L2 LINE L2 -661 2653 2544 730 238 0 7 chr11 2860120 2860263 -145923209 + FRAM SINE Alu 1 142 -34 234 271 28 28 chr11 2860408 2860515 -145922957 + L1ME LINE L1 3765 3871 -2275 447 298 88 0 chr11 2860631 2860846 -145922626 + L1ME LINE L1 4111 4344 -1802 2057 148 29 18 chr11 2860871 2861145 -145922327 - Tigger3(Golem) DNA MER2_type 0 3028 2747 2187 116 0 25 chr11 2861145 2861463 -145922009 + AluSx SINE Alu 1 310 -2 2057 148 29 18 chr11 2861463 2861572 -145921900 - Tigger3(Golem) DNA MER2_type -281 2747 2641 599 231 15 0 chr11 2861573 2861703 -145921769 + FLAM_A SINE Alu 1 132 -1 369 105 35 0 chr11 2861703 2861760 -145921712 + AluSq SINE Alu 134 192 -111 1885 153 0 7 chr11 2862116 2862403 -145921069 - AluSx SINE Alu -25 287 3 237 289 0 0 chr11 2862471 2862547 -145920925 + L1ME LINE L1 4534 4609 -1537 805 227 135 40 chr11 2862567 2862897 -145920575 + MLT1D LTR MaLR 1 363 -142 2282 92 0 0 chr11 2862957 2863249 -145920223 - AluSq SINE Alu -21 292 1 1892 129 4 11 chr11 2863736 2864015 -145919457 + AluSx SINE Alu 35 311 -1 928 275 75 8 chr11 2864067 2864080 -145919392 + L1ME LINE L1 5291 5302 -864 1839 175 13 0 chr11 2864080 2864388 -145919084 + AluJo SINE Alu 1 312 0 928 275 75 8 chr11 2864388 2864859 -145918613 + L1ME LINE L1 5302 5822 -344 199 311 39 19 chr11 2865154 2865257 -145918215 - L2 LINE L2 -1680 1634 1530 429 312 81 29 chr11 2865917 2866090 -145917382 + MIR3 SINE MIR 20 201 -7 398 230 50 0 chr11 2866121 2866221 -145917251 - MIR SINE MIR -12 250 146 437 273 62 8 chr11 2866238 2866366 -145917106 - MIR SINE MIR -74 188 54 326 296 35 52 chr11 2866425 2866540 -145916932 + MIR SINE MIR 34 146 -62 682 150 8 132 chr11 2867446 2867671 -145915801 - L1ME2 LINE L1 -12 6152 5955 1659 177 27 10 chr11 2867759 2868058 -145915414 - AluJo SINE Alu -8 304 1 1585 186 0 43 chr11 2868116 2868439 -145915033 + AluJb SINE Alu 1 309 -3 2322 125 0 0 chr11 2869983 2870287 -145913185 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr11 2870540 2870562 -145912910 + AT_rich Low_complexity Low_complexity 1 22 0 653 164 0 0 chr11 2871116 2871226 -145912246 + AluJb SINE Alu 199 308 -4 189 330 152 36 chr11 2871844 2871956 -145911516 - L2 LINE L2 -14 3258 3134 349 304 0 0 chr11 2871992 2872084 -145911388 + L2 LINE L2 2679 2770 -544 1394 113 34 119 chr11 2872187 2872299 -145911173 - L1MB7 LINE L1 -45 6139 6019 2505 76 0 0 chr11 2872299 2872602 -145910870 - AluSc SINE Alu -4 305 3 1394 113 34 119 chr11 2872602 2872843 -145910629 - L1MB7 LINE L1 -165 6019 5816 789 270 54 32 chr11 2872847 2873209 -145910263 + L2 LINE L2 2776 3138 -175 229 328 121 17 chr11 2873380 2873496 -145909976 - L2 LINE L2 -4 3268 3141 493 126 223 0 chr11 2873634 2873737 -145909735 + MER3 DNA MER1_type 83 208 -1 25 0 0 0 chr11 2873960 2873985 -145909487 + AT_rich Low_complexity Low_complexity 1 25 0 1020 243 100 43 chr11 2874692 2875133 -145908339 + MLT1C LTR MaLR 1 466 -1 703 216 115 16 chr11 2875235 2875538 -145907934 - MLT1E1 LTR MaLR -44 610 210 766 156 8 8 chr11 2875558 2875686 -145907786 - AluSx SINE Alu -12 298 171 923 124 0 0 chr11 2875686 2875807 -145907665 - AluSx SINE Alu -191 122 2 884 190 82 0 chr11 2875808 2876003 -145907469 - MLT1E1 LTR MaLR -437 217 7 196 271 50 86 chr11 2876643 2876783 -145906689 + MIR SINE MIR 128 262 0 250 256 96 45 chr11 2877268 2877424 -145906048 - L1ME4a LINE L1 -18 6103 5940 192 40 0 0 chr11 2877458 2877483 -145905989 + (TA)n Simple_repeat Simple_repeat 1 25 0 2040 143 14 0 chr11 2877810 2878096 -145905376 + AluSx SINE Alu 1 290 -22 208 338 62 12 chr11 2878270 2878350 -145905122 - MIR SINE MIR -119 143 60 22 35 0 0 chr11 2878366 2878395 -145905077 + AT_rich Low_complexity Low_complexity 1 29 0 2217 129 30 3 chr11 2878416 2878780 -145904692 - THE1C LTR MaLR 0 375 2 188 195 0 24 chr11 2879475 2879516 -145903956 + L2 LINE L2 3274 3313 0 312 230 0 48 chr11 2879659 2879773 -145903699 + MER5B DNA MER1_type 1 174 -4 462 178 9 19 chr11 2879945 2880052 -145903420 - L1MA9 LINE L1 0 6312 6207 1114 113 0 19 chr11 2880078 2880237 -145903235 - AluSg/x SINE Alu -25 285 130 577 253 29 58 chr11 2880756 2880869 -145902603 + MER5B DNA MER1_type 2 110 -68 2166 89 52 0 chr11 2880869 2881160 -145902312 - AluSx SINE Alu -6 306 1 577 253 29 58 chr11 2881160 2881220 -145902252 + MER5B DNA MER1_type 110 170 -8 248 283 181 65 chr11 2882749 2882887 -145900585 - L2 LINE L2 -16 3256 3103 1961 151 7 0 chr11 2883123 2883407 -145900065 - AluSx SINE Alu -26 286 1 951 59 7 13 chr11 2883516 2883668 -145899804 - SVA Other Other -520 866 716 2992 154 75 6 chr11 2884547 2884892 -145898580 - L1MB4 LINE L1 -8 6172 5852 1723 151 37 40 chr11 2884892 2885191 -145898281 - AluSx SINE Alu -12 300 3 2992 154 75 6 chr11 2885191 2885488 -145897984 - L1MB4 LINE L1 -328 5852 5486 735 166 36 67 chr11 2885493 2885686 -145897786 - AluJo SINE Alu -9 303 117 2398 190 54 41 chr11 2885705 2886476 -145896996 - L1M4c LINE L1 -4839 1703 930 1726 186 3 3 chr11 2886476 2886771 -145896701 - AluSx SINE Alu -17 295 1 2398 190 54 41 chr11 2886771 2886862 -145896610 - L1M4c LINE L1 -5612 930 842 358 218 0 0 chr11 2886891 2886969 -145896503 + ERVL LTR ERVL 307 384 -5380 250 256 96 45 chr11 2887477 2887633 -145895839 - L1ME4a LINE L1 -18 6103 5940 192 40 0 0 chr11 2887668 2887693 -145895779 + (TA)n Simple_repeat Simple_repeat 1 25 0 2040 143 14 0 chr11 2888019 2888305 -145895167 + AluSx SINE Alu 1 290 -22 208 319 57 22 chr11 2888479 2888569 -145894903 - MIR SINE MIR -66 142 52 22 35 0 0 chr11 2888576 2888605 -145894867 + AT_rich Low_complexity Low_complexity 1 29 0 2379 113 30 0 chr11 2888626 2888989 -145894483 - THE1C LTR MaLR 0 375 2 580 230 46 75 chr11 2890422 2890535 -145892937 + MER5B DNA MER1_type 2 110 -68 2166 89 52 0 chr11 2890535 2890826 -145892646 - AluSx SINE Alu -6 306 1 580 230 46 75 chr11 2890826 2890886 -145892586 + MER5B DNA MER1_type 110 170 -8 248 283 181 65 chr11 2892416 2892554 -145890918 - L2 LINE L2 -16 3256 3103 1961 151 7 0 chr11 2892790 2893074 -145890398 - AluSx SINE Alu -26 286 1 220 48 48 24 chr11 2893081 2893123 -145890349 + (TTTTA)n Simple_repeat Simple_repeat 5 47 0 618 167 87 80 chr11 2893125 2893275 -145890197 - AluSg/x SINE Alu -25 285 135 210 37 0 0 chr11 2893285 2893312 -145890160 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 6370 73 37 43 chr11 2893326 2894500 -145888972 - SVA Other Other -518 1383 432 951 59 7 13 chr11 2894517 2894669 -145888803 - SVA Other Other -520 866 716 3160 149 21 21 chr11 2895591 2896242 -145887230 - L1MA4A LINE L1 -348 7017 6367 * 40091 32 24 2 chr11 2896236 2902260 -145881212 - L1PA3 LINE L1 -10 6145 2 4237 196 16 22 chr11 2902261 2903042 -145880430 - L1MA4A LINE L1 -815 6393 5618 2261 104 13 13 chr11 2903042 2903351 -145880121 - AluSx SINE Alu -3 309 1 4237 196 16 22 chr11 2903351 2903512 -145879960 - L1MA4A LINE L1 -1590 5618 5457 387 173 0 0 chr11 2903521 2903596 -145879876 - L1MA5A LINE L1 0 6297 6223 4603 196 24 8 chr11 2903601 2904142 -145879330 - L1MA4A LINE L1 -3024 4184 3618 1463 118 50 5 chr11 2904142 2904362 -145879110 + MER30 DNA MER1_type 1 230 0 4603 196 24 8 chr11 2904362 2904837 -145878635 - L1MA4A LINE L1 -3590 3618 3152 1989 210 95 24 chr11 2904834 2905530 -145877942 - L1MA4A LINE L1 -5737 1472 741 * 227 275 11 44 chr11 2905505 2905596 -145877876 - L1M2b LINE L1 -6064 1145 1058 * 274 269 190 5 chr11 2905970 2906128 -145877344 - MIR SINE MIR -50 212 34 1904 156 73 43 chr11 2906389 2906760 -145876712 + MSTD LTR MaLR 6 387 -9 458 275 53 5 chr11 2907273 2907462 -145876010 - MIR SINE MIR -12 250 53 291 246 133 0 chr11 2908451 2908566 -145874906 + MIR SINE MIR 37 165 -63 202 184 0 0 chr11 2908577 2908615 -145874857 - L2 LINE L2 0 3313 3276 214 326 0 20 chr11 2908651 2908749 -145874723 + MIR SINE MIR 162 257 -5 * 468 241 150 9 chr11 2908681 2908901 -145874571 - MIR SINE MIR 0 262 16 405 165 156 55 chr11 2911381 2911490 -145871982 - FRAM SINE Alu -11 165 46 6203 205 55 59 chr11 2912151 2913076 -145870396 - L1MC4 LINE L1 -1 8041 7114 543 101 0 0 chr11 2913076 2913155 -145870317 + (TCCA)n Simple_repeat Simple_repeat 3 81 0 6203 205 55 59 chr11 2913155 2913584 -145869888 - L1MC4 LINE L1 -928 7114 6685 207 100 0 0 chr11 2913584 2913614 -145869858 + (CCTA)n Simple_repeat Simple_repeat 2 31 0 6203 205 55 59 chr11 2913614 2914170 -145869302 - L1MC4 LINE L1 -1357 6685 6041 3106 231 32 14 chr11 2914714 2915495 -145867977 - L1MC4a LINE L1 -1759 6049 5255 2283 107 0 0 chr11 2915555 2915854 -145867618 - AluSx SINE Alu -13 299 1 68 42 0 0 chr11 2915871 2915967 -145867505 + AT_rich Low_complexity Low_complexity 1 96 0 24 0 0 0 chr11 2916683 2916707 -145866765 + AT_rich Low_complexity Low_complexity 1 24 0 2296 119 28 0 chr11 2916717 2917070 -145866402 - L1PB1 LINE L1 -7 6144 5782 186 125 0 54 chr11 2917070 2917126 -145866346 + (TA)n Simple_repeat Simple_repeat 2 54 0 4293 155 33 1 chr11 2917126 2918471 -145865001 - L1PB1 LINE L1 -359 5792 4400 323 315 15 39 chr11 2918672 2918802 -145864670 + MER89-int LTR ERV1 3794 3920 -2881 2295 128 6 0 chr11 2918897 2919242 -145864230 - L1PA13 LINE L1 -5 6158 5812 1998 304 88 28 chr11 2919261 2920200 -145863272 + MER89-int LTR ERV1 1969 2964 -1683 271 357 27 37 chr11 2920854 2921338 -145862134 - L1MC4 LINE L1 -265 5856 5378 2163 88 35 7 chr11 2922715 2922998 -145860474 + AluY SINE Alu 1 291 -20 1796 75 13 0 chr11 2923231 2923458 -145860014 + AluSq SINE Alu 74 303 -10 248 284 131 34 chr11 2923821 2923997 -145859475 + MIR SINE MIR 19 211 -51 2313 81 0 60 chr11 2924736 2925068 -145858404 + AluSx SINE Alu 1 312 0 195 42 0 0 chr11 2925561 2925585 -145857887 + (T)n Simple_repeat Simple_repeat 1 24 0 327 25 0 0 chr11 2926700 2926740 -145856732 + (CA)n Simple_repeat Simple_repeat 1 40 0 205 180 16 33 chr11 2928714 2928775 -145854697 + T-rich Low_complexity Low_complexity 5 64 0 662 159 38 30 chr11 2930375 2930507 -145852965 - AluJb SINE Alu -178 134 2 22 70 0 0 chr11 2930832 2930875 -145852597 + AT_rich Low_complexity Low_complexity 1 43 0 405 0 0 0 chr11 2932433 2932478 -145850994 + (CA)n Simple_repeat Simple_repeat 2 46 0 252 358 142 11 chr11 2933007 2933281 -145850191 + L2 LINE L2 2553 2862 -452 251 255 60 81 chr11 2933320 2933469 -145850003 + L2 LINE L2 2916 3061 -211 2369 83 0 0 chr11 2934027 2934316 -145849156 - AluSx SINE Alu -23 289 1 2040 82 7 0 chr11 2935886 2936156 -145847316 + L1PA6 LINE L1 5879 6150 -4 2940 92 29 22 chr11 2936946 2937391 -145846081 - LTR7 LTR ERV1 -2 448 1 2332 95 68 14 chr11 2937391 2937761 -145845711 - HERVH LTR ERV1 0 7713 7324 1416 99 20 0 chr11 2937761 2937962 -145845510 - HERVH LTR ERV1 -1894 5819 5615 3133 124 0 2 chr11 2937997 2938611 -145844861 - HERVH LTR ERV1 -2564 5149 4489 9326 180 66 54 chr11 2938614 2942518 -145840954 - HERVH LTR ERV1 -3720 3993 1 2976 87 27 22 chr11 2942521 2942967 -145840505 - LTR7 LTR ERV1 -2 448 1 242 306 51 0 chr11 2943285 2943383 -145840089 + L2 LINE L2 2580 2682 -632 1398 180 48 0 chr11 2943522 2943772 -145839700 + AluJo SINE Alu 37 298 -14 310 326 85 14 chr11 2944042 2944183 -145839289 - L2 LINE L2 -11 3261 3111 1234 226 39 33 chr11 2944291 2944653 -145838819 + L1ME LINE L1 5296 5659 -503 2583 191 52 93 chr11 2944950 2945706 -145837766 - MER50 LTR ERV1 0 734 10 687 215 99 40 chr11 2946171 2946394 -145837078 + MER106A DNA MER1_type 1 236 0 294 296 64 55 chr11 2946417 2946637 -145836835 + HAL1b LINE L1 302 523 -825 370 286 0 36 chr11 2947350 2947462 -145836010 - MER5B DNA MER1_type -70 108 1 180 283 0 0 chr11 2948330 2948376 -145835096 - MER5B DNA MER1_type -126 52 7 489 225 131 25 chr11 2948392 2948552 -145834920 - MER5A DNA MER1_type -6 183 7 4349 168 72 2 chr11 2948582 2949367 -145834105 - MER6 DNA MER2_type 0 865 21 1873 170 0 10 chr11 2949367 2949673 -145833799 + AluJb SINE Alu 1 303 -9 4349 168 72 2 chr11 2949673 2949696 -145833776 - MER6 DNA MER2_type -844 21 1 684 99 0 0 chr11 2949809 2949910 -145833562 - MER6 DNA MER2_type -189 676 576 601 260 99 55 chr11 2950145 2950561 -145832911 - MER20B DNA MER1_type -166 617 184 341 303 26 62 chr11 2951702 2951897 -145831575 - MIR SINE MIR -7 255 68 29 0 0 0 chr11 2951948 2951977 -145831495 + AT_rich Low_complexity Low_complexity 1 29 0 338 293 70 37 chr11 2952541 2952814 -145830658 - MER65A LTR ERV1 -3 442 161 227 214 36 0 chr11 2953007 2953063 -145830409 - L1MC3 LINE L1 -551 7628 7571 264 273 10 30 chr11 2953065 2953164 -145830308 - MLT1F1 LTR MaLR -456 111 15 1146 239 53 67 chr11 2953170 2953894 -145829578 - L1MC3 LINE L1 -720 7459 1421 988 180 5 37 chr11 2953950 2954139 -145829333 + AluJo SINE Alu 1 183 -129 569 274 59 0 chr11 2954150 2954303 -145829169 - L1MC/D LINE L1 -2194 5614 5453 226 275 0 33 chr11 2954372 2954463 -145829009 + MLT1H LTR MaLR 84 171 -378 1256 120 0 22 chr11 2954595 2954778 -145828694 + AluSg/x SINE Alu 122 300 -12 234 0 0 0 chr11 2954783 2954809 -145828663 + (TCTCCC)n Simple_repeat Simple_repeat 6 31 0 4068 170 82 11 chr11 2954951 2954963 -145828509 - MER6 DNA MER2_type -29 836 826 1898 103 14 21 chr11 2954963 2955244 -145828228 - AluSq SINE Alu -30 283 5 4068 170 82 11 chr11 2955244 2955989 -145827483 - MER6 DNA MER2_type -39 826 20 2085 129 0 22 chr11 2955989 2956300 -145827172 + AluJb SINE Alu 1 304 -8 4068 170 82 11 chr11 2956300 2956322 -145827150 - MER6 DNA MER2_type -845 20 1 674 86 0 38 chr11 2956435 2956498 -145826974 - MER6 DNA MER2_type -189 676 617 1936 144 10 3 chr11 2956498 2956789 -145826683 + AluSx SINE Alu 1 293 -19 674 86 0 38 chr11 2956789 2956830 -145826642 - MER6 DNA MER2_type -248 617 576 376 268 98 49 chr11 2957063 2957369 -145826103 - MER20B DNA MER1_type -195 588 268 313 313 26 62 chr11 2958585 2958780 -145824692 - MIR SINE MIR -7 255 68 27 0 0 0 chr11 2958831 2958858 -145824614 + AT_rich Low_complexity Low_complexity 1 27 0 22 56 0 0 chr11 2959266 2959302 -145824170 + AT_rich Low_complexity Low_complexity 1 36 0 361 290 67 60 chr11 2959610 2959893 -145823579 - MER65A LTR ERV1 0 445 161 281 301 52 15 chr11 2960000 2960136 -145823336 - MER65B LTR ERV1 -390 141 1 189 322 43 52 chr11 2960404 2960519 -145822953 - L2 LINE L2 -1834 1480 1367 240 283 167 43 chr11 2960736 2961150 -145822322 - L2 LINE L2 -2211 1103 639 9704 65 16 82 chr11 2961865 2963348 -145820124 - SVA Other Other 0 1386 1 1256 120 0 22 chr11 2963353 2963536 -145819936 - AluSg/x SINE Alu -12 298 120 267 255 0 32 chr11 2963668 2963762 -145819710 - MLT1H LTR MaLR -378 171 81 502 301 59 0 chr11 2963831 2963984 -145819488 + L1MC3 LINE L1 5453 5614 -2194 959 185 5 37 chr11 2963995 2964184 -145819288 - AluJo SINE Alu -129 183 1 443 278 53 47 chr11 2964240 2964578 -145818894 + L1MDa LINE L1 1421 1760 -4780 * 1978 205 58 42 chr11 2964577 2965124 -145818348 + L1MC3 LINE L1 6675 7230 -555 256 261 45 23 chr11 2965126 2965214 -145818258 + MER65B LTR ERV1 52 141 -390 366 291 65 38 chr11 2965334 2965595 -145817877 + MER65A LTR ERV1 175 442 -3 26 0 0 0 chr11 2966159 2966185 -145817287 + AT_rich Low_complexity Low_complexity 1 26 0 326 308 26 62 chr11 2966236 2966431 -145817041 + MIR SINE MIR 68 255 -7 1855 130 16 16 chr11 2966899 2967221 -145816251 - L1 LINE L1 -908 5238 4917 595 196 0 0 chr11 2967221 2967313 -145816159 - MER2 DNA MER2_type -252 93 2 355 292 10 0 chr11 2967321 2967417 -145816055 + MIR SINE MIR 163 259 -3 670 171 137 0 chr11 2967450 2967567 -145815905 + FLAM_C SINE Alu 1 133 0 4876 146 58 16 chr11 2969125 2970061 -145813411 + L1MA8 LINE L1 5315 6289 -2 366 345 77 5 chr11 2973045 2973254 -145810218 - MIR SINE MIR -5 257 34 636 250 48 30 chr11 2974879 2975222 -145808250 - L1MDa LINE L1 -4811 1571 1173 740 256 26 42 chr11 2975229 2975431 -145808041 - L1MC/D LINE L1 -605 5561 5443 523 273 125 30 chr11 2975445 2975709 -145807763 + MLT1H LTR MaLR 17 305 -244 273 283 81 30 chr11 2975746 2975845 -145807627 + L2 LINE L2 3205 3308 -5 2293 83 7 0 chr11 2976072 2976361 -145807111 + AluSq SINE Alu 1 291 -22 3807 164 45 10 chr11 2976684 2977402 -145806070 - L1MA8 LINE L1 -3 6288 5546 21 0 0 0 chr11 2977681 2977702 -145805770 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr11 2977814 2977846 -145805626 + AT_rich Low_complexity Low_complexity 1 32 0 239 246 27 27 chr11 2977946 2978056 -145805416 + L1ME LINE L1 5677 5786 -376 199 194 83 69 chr11 2978084 2978156 -145805316 - L2 LINE L2 -5 3308 3236 596 228 10 56 chr11 2978176 2978373 -145805099 + L1MA9 LINE L1 6095 6282 -30 212 333 69 0 chr11 2979466 2979553 -145803919 + MIR SINE MIR 30 122 -86 255 176 39 0 chr11 2979588 2979639 -145803833 - MER58A DNA MER1_type -1 223 171 656 238 0 0 chr11 2979652 2979774 -145803698 - MER58A DNA MER1_type 0 122 1 234 0 0 0 chr11 2980206 2980232 -145803240 + (TG)n Simple_repeat Simple_repeat 2 27 0 217 254 90 15 chr11 2980241 2980308 -145803164 - MIR SINE MIR -190 72 1 251 250 204 0 chr11 2980437 2980545 -145802927 + MIR SINE MIR 69 198 -64 207 339 43 0 chr11 2980865 2980980 -145802492 - L2 LINE L2 -1668 1646 1527 354 307 66 48 chr11 2981174 2981340 -145802132 + MIR SINE MIR 55 223 -39 218 342 34 68 chr11 2981340 2981606 -145801866 + L2 LINE L2 2624 2880 -434 200 368 28 28 chr11 2982098 2982204 -145801268 - MIR SINE MIR -67 141 36 342 0 0 0 chr11 2983345 2983383 -145800089 + (T)n Simple_repeat Simple_repeat 1 38 0 330 235 76 50 chr11 2983480 2983599 -145799873 + MIR SINE MIR 8 129 -133 1505 194 48 50 chr11 2985006 2985402 -145798070 - MLT2C1 LTR ERVL -2 395 1 338 185 15 0 chr11 2985426 2985491 -145797981 - L1 LINE L1 -1092 5054 4989 30 27 0 0 chr11 2985628 2985665 -145797807 + AT_rich Low_complexity Low_complexity 1 37 0 825 180 24 120 chr11 2986225 2986475 -145796997 - LTR8A LTR ERV1 -468 259 34 1849 125 42 0 chr11 2986487 2986774 -145796698 - L1PA16 LINE L1 -5 6161 5863 767 288 132 20 chr11 2986832 2987235 -145796237 - L1ME4a LINE L1 -217 5904 5457 27 0 0 0 chr11 2988970 2988997 -145794475 + AT_rich Low_complexity Low_complexity 1 27 0 1759 110 98 0 chr11 2991645 2991927 -145791545 + AluSp SINE Alu 4 310 0 245 220 20 0 chr11 2992054 2992104 -145791368 - MIR3 SINE MIR -7 201 151 258 270 16 0 chr11 2992106 2992169 -145791303 - MER113 DNA MER1_type? -4 517 454 297 128 0 0 chr11 2992717 2992764 -145790708 + (CA)n Simple_repeat Simple_repeat 2 48 0 7011 124 20 8 chr11 2994589 2996290 -145787182 + L1MA3 LINE L1 4583 6305 0 231 132 0 57 chr11 2996298 2996351 -145787121 + (TAAAAA)n Simple_repeat Simple_repeat 2 51 0 2234 102 0 0 chr11 2996353 2996658 -145786814 + AluSx SINE Alu 1 305 0 180 152 0 0 chr11 2997053 2997086 -145786386 + (TATG)n Simple_repeat Simple_repeat 2 34 0 224 235 0 44 chr11 2997773 2997841 -145785631 + G-rich Low_complexity Low_complexity 6 70 0 22 0 0 0 chr11 2998353 2998375 -145785097 + AT_rich Low_complexity Low_complexity 1 22 0 6518 114 26 48 chr11 2998412 2999758 -145783714 - L1MA3 LINE L1 0 6305 4987 * 7209 54 13 1 chr11 2999732 3000856 -145782616 - L1PA5 LINE L1 -2 6152 5018 367 0 0 0 chr11 3000856 3000897 -145782575 + L1P LINE L1 1264 1304 -4842 * 17633 111 13 19 chr11 3000894 3004802 -145778670 + L1PA7 LINE L1 252 4182 -2279 616 122 0 0 chr11 3004803 3004901 -145778571 - L1P LINE L1 -2793 3353 3256 * 42872 53 8 1 chr11 3004895 3011013 -145772459 - L1PA4 LINE L1 -4 6151 1 517 146 39 0 chr11 3011020 3011123 -145772349 - L1P LINE L1 -2889 3257 3151 11397 78 29 16 chr11 3011123 3013390 -145770082 + L1PA7 LINE L1 4185 6465 -4 227 316 13 0 chr11 3013462 3013541 -145769931 - MIR SINE MIR -110 152 73 1985 181 16 8 chr11 3014599 3014969 -145768503 + L1MD3 LINE L1 7623 7995 0 2520 78 0 0 chr11 3015662 3015970 -145767502 - AluY SINE Alu -3 308 1 575 315 50 0 chr11 3016907 3017088 -145766384 - MIR SINE MIR -65 197 8 231 167 0 0 chr11 3017358 3017400 -145766072 + (TCTA)n Simple_repeat Simple_repeat 3 44 0 357 186 36 14 chr11 3018417 3018557 -145764915 + (TCTA)n Simple_repeat Simple_repeat 2 144 0 3282 237 60 10 chr11 3019399 3020261 -145763211 + L1ME3A LINE L1 5258 6162 -8 318 322 67 52 chr11 3021391 3021658 -145761814 + MARNA DNA Mariner 280 550 -36 527 242 8 8 chr11 3023752 3023876 -145759596 + L2 LINE L2 3187 3310 -3 556 251 70 20 chr11 3025525 3025697 -145757775 + MIR SINE MIR 41 217 -45 1647 85 55 4 chr11 3026777 3027013 -145756459 - L1MA1 LINE L1 0 6302 6055 557 283 108 14 chr11 3027063 3027209 -145756263 + L2 LINE L2 1783 1914 -1400 2301 156 27 16 chr11 3027209 3027580 -145755892 - THE1C LTR MaLR 0 375 1 557 283 108 14 chr11 3027580 3027719 -145755753 + L2 LINE L2 1914 2095 -1219 844 162 45 28 chr11 3027939 3028249 -145755223 + THE1C LTR MaLR 1 375 0 1496 224 55 33 chr11 3028289 3028655 -145754817 - MLT1A2 LTR MaLR 0 374 1 280 275 83 33 chr11 3028935 3029055 -145754417 + LTR16A1 LTR ERVL 330 455 -2 1992 242 92 70 chr11 3029732 3030469 -145753003 + L1MB8 LINE L1 3059 3779 -2367 2020 125 0 0 chr11 3030469 3030750 -145752722 + AluSx SINE Alu 32 312 0 1992 242 92 70 chr11 3030750 3030981 -145752491 + L1MB8 LINE L1 3779 4004 -2142 465 148 34 23 chr11 3030981 3031069 -145752403 + L1MA10 LINE L1 6238 6326 -8 1992 242 92 70 chr11 3031069 3031080 -145752392 + L1MB8 LINE L1 4004 4013 -2133 3396 185 28 17 chr11 3031080 3031771 -145751701 + L1MB8 LINE L1 5481 6178 0 1992 242 92 70 chr11 3031771 3031855 -145751617 + L1MB8 LINE L1 4013 4147 -1999 525 280 63 5 chr11 3031863 3032052 -145751420 + L1ME2 LINE L1 4579 4778 -1368 1314 237 188 26 chr11 3032069 3032332 -145751140 + L1ME2 LINE L1 4856 5075 -1089 1614 151 3 69 chr11 3032332 3032651 -145750821 + AluJb SINE Alu 1 298 -14 1314 237 188 26 chr11 3032651 3033397 -145750075 + L1ME2 LINE L1 5075 6087 -77 1670 137 78 18 chr11 3033397 3033681 -145749791 - AluJo SINE Alu -11 301 1 1314 237 188 26 chr11 3033681 3033774 -145749698 + L1ME2 LINE L1 6087 6164 0 236 288 17 0 chr11 3034090 3034149 -145749323 + L2 LINE L2 3196 3255 -17 1098 219 44 9 chr11 3034446 3034674 -145748798 - MER8 DNA MER2_type -3 236 1 23 33 0 0 chr11 3036757 3036787 -145746685 + AT_rich Low_complexity Low_complexity 1 30 0 425 250 43 43 chr11 3039089 3039253 -145744219 + MIR SINE MIR 23 186 -76 928 122 122 0 chr11 3039948 3040104 -145743368 - MER30 DNA MER1_type -55 175 1 264 315 0 0 chr11 3040177 3040269 -145743203 + MIR SINE MIR 167 258 -4 371 323 65 26 chr11 3040282 3040437 -145743035 - L2 LINE L2 -8 3264 3104 237 304 244 7 chr11 3040753 3040888 -145742584 + MIR SINE MIR 83 249 -13 421 277 62 28 chr11 3041515 3041692 -145741780 - L2 LINE L2 -8 3305 3123 1254 161 70 21 chr11 3041693 3041935 -145741537 + L1M2 LINE L1 5459 5712 -579 4361 144 57 32 chr11 3041947 3042280 -145741192 + L1MA8 LINE L1 5458 5781 -510 216 0 0 0 chr11 3042280 3042304 -145741168 + (CA)n Simple_repeat Simple_repeat 1 24 0 4361 144 57 32 chr11 3042304 3042783 -145740689 + L1MA8 LINE L1 5781 6290 -1 1154 304 82 25 chr11 3042789 3043588 -145739884 - L2 LINE L2 -179 3134 2292 7156 46 17 2 chr11 3043593 3044489 -145738983 - L1PA5 LINE L1 -1027 5119 4211 7803 46 3 1 chr11 3044489 3045507 -145737965 + L1PA5 LINE L1 5136 6152 -2 253 157 229 29 chr11 3045507 3045577 -145737895 - MER5A DNA MER1_type -97 92 9 192 77 0 0 chr11 3045617 3045643 -145737829 + (A)n Simple_repeat Simple_repeat 1 26 0 394 259 299 11 chr11 3045645 3045919 -145737553 - L2 LINE L2 -1028 2286 1934 1222 134 24 14 chr11 3045923 3046132 -145737340 + L1PB1 LINE L1 5941 6151 0 1959 190 61 10 chr11 3046146 3046831 -145736641 + L1M3 LINE L1 4898 5614 -566 228 220 125 56 chr11 3047323 3047485 -145735987 - MIR SINE MIR -70 192 17 570 147 0 40 chr11 3047646 3047796 -145735676 + (AGGGGG)n Simple_repeat Simple_repeat 5 148 0 1400 166 14 0 chr11 3048984 3049207 -145734265 + MER1B DNA MER1_type 1 226 -71 1072 124 16 32 chr11 3050161 3050346 -145733126 + L1PA13 LINE L1 5982 6163 0 600 63 13 0 chr11 3050822 3050901 -145732571 - MADE1 DNA Mariner 0 80 1 1056 294 95 27 chr11 3051116 3051717 -145731755 - L2 LINE L2 -422 2892 2251 205 191 16 48 chr11 3051777 3051840 -145731632 + GA-rich Low_complexity Low_complexity 5 65 0 314 329 72 6 chr11 3051851 3052018 -145731454 - L2 LINE L2 -1424 1890 1713 291 397 49 0 chr11 3054872 3055056 -145728416 - L3 LINE CR1 -61 1516 1324 3591 166 68 7 chr11 3055774 3056493 -145726979 - L1MA4 LINE L1 -11 6289 5527 3839 122 28 18 chr11 3056493 3057100 -145726372 + MER50-int LTR ERV1 6591 7203 -2 2533 185 41 126 chr11 3057100 3057717 -145725755 + MER50 LTR ERV1 10 549 -185 2029 152 3 0 chr11 3057717 3058026 -145725446 - AluSx SINE Alu 0 312 3 2533 185 41 126 chr11 3058026 3058187 -145725285 + MER50 LTR ERV1 549 722 -12 1374 174 123 119 chr11 3058227 3058772 -145724700 + LTR10B LTR ERV1 1 547 0 7321 250 41 28 chr11 3058772 3063614 -145719858 + LTR10B-int LTR ERV1 5 3922 -2727 803 174 48 48 chr11 3063623 3063790 -145719682 - LTR5 LTR ERVK -14 955 789 598 174 0 109 chr11 3063834 3063972 -145719500 - HERVKC4 LTR ERVK -4526 736 614 * 4039 172 20 6 chr11 3063942 3064644 -145718828 - HERVKC4 LTR ERVK -6531 712 1 3623 204 21 63 chr11 3064656 3065649 -145717823 - LTR5 LTR ERVK -14 955 5 3898 277 13 17 chr11 3065651 3066719 -145716753 + LTR10B-int LTR ERV1 4941 6004 -1781 6404 239 21 27 chr11 3066832 3068424 -145715048 + LTR10B-int LTR ERV1 5068 6649 0 338 153 68 126 chr11 3068478 3068668 -145714804 + LTR10B LTR ERV1 107 285 -262 1319 174 41 16 chr11 3068727 3068969 -145714503 + LTR10B LTR ERV1 300 547 0 4234 236 117 92 chr11 3068970 3069557 -145713915 + MSTC-int LTR MaLR 76 647 -1088 3743 158 49 29 chr11 3069557 3070215 -145713257 + LTR51 LTR ERV1 1 671 0 4234 236 117 92 chr11 3070215 3071245 -145712227 + MSTC-int LTR MaLR 647 1733 -2 2224 146 72 46 chr11 3071252 3071669 -145711803 + MSTC LTR MaLR 1 428 0 184 333 36 12 chr11 3073552 3073636 -145709836 - L2 LINE L2 -36 3277 3192 447 327 146 16 chr11 3074004 3074374 -145709098 - L2 LINE L2 -640 2674 2257 1581 294 153 59 chr11 3074473 3075739 -145707733 + L2 LINE L2 1614 2987 -285 289 297 156 23 chr11 3076596 3076852 -145706620 - L2 LINE L2 -1160 2154 1865 2138 91 0 0 chr11 3077089 3077376 -145706096 + AluY SINE Alu 1 287 -24 202 193 91 57 chr11 3077433 3077521 -145705951 - MIR SINE MIR -78 184 94 543 222 0 128 chr11 3078234 3078468 -145705004 + MER3 DNA MER1_type 1 204 -5 359 323 63 26 chr11 3080352 3080541 -145702931 - L3 LINE CR1 -59 1518 1323 2043 189 27 5 chr11 3080966 3081341 -145702131 + MLT1B LTR MaLR 3 385 -5 2717 182 107 23 chr11 3081344 3081860 -145701612 + MLT1B-int LTR MaLR 5 678 -693 2186 157 18 32 chr11 3081860 3082294 -145701178 + L1MA5 LINE L1 5868 6295 -5 2717 182 107 23 chr11 3082294 3082465 -145701007 + MLT1B-int LTR MaLR 678 833 -538 1469 212 119 11 chr11 3082755 3083109 -145700363 + MLT1B-int LTR MaLR 978 1369 -2 1746 153 150 23 chr11 3083111 3083457 -145700015 + MLT1B LTR MaLR 1 390 0 674 273 73 78 chr11 3084348 3084706 -145698766 + L2 LINE L2 2433 2790 -524 1256 144 158 78 chr11 3084706 3085053 -145698419 + THE1C LTR MaLR 1 375 0 674 273 73 78 chr11 3085053 3085078 -145698394 + L2 LINE L2 2790 2814 -500 346 306 51 25 chr11 3085306 3085502 -145697970 + L1MEc LINE L1 1620 1820 -4576 194 313 50 0 chr11 3087286 3087366 -145696106 - L2 LINE L2 -679 2635 2552 584 297 71 53 chr11 3088402 3088813 -145694659 - L2 LINE L2 -635 2679 2262 2086 301 154 32 chr11 3088915 3089006 -145694466 + L2 LINE L2 1601 1680 -1634 372 22 0 0 chr11 3089006 3089051 -145694421 + (CA)n Simple_repeat Simple_repeat 2 46 0 2086 301 154 32 chr11 3089051 3090186 -145693286 + L2 LINE L2 1680 2977 -337 308 336 107 24 chr11 3091076 3091412 -145692060 - L2 LINE L2 -1240 2074 1711 187 304 83 48 chr11 3091489 3091657 -145691815 - MIR SINE MIR -38 224 51 222 322 33 0 chr11 3091904 3091994 -145691478 - MIR SINE MIR -18 244 152 30 69 0 0 chr11 3091994 3092052 -145691420 + AT_rich Low_complexity Low_complexity 1 58 0 506 246 222 0 chr11 3092380 3092551 -145690921 + MER3 DNA MER1_type 1 209 0 1719 164 134 3 chr11 3094845 3094937 -145688535 + MER7A DNA MER2_type 3 82 -2956 776 98 98 8 chr11 3094937 3095060 -145688412 - L1PA13 LINE L1 -5 6158 6025 1719 164 134 3 chr11 3095060 3095272 -145688200 + MER7A DNA MER2_type 82 345 -1 338 264 74 31 chr11 3095291 3095454 -145688018 + MLT1I LTR MaLR 1 170 -239 4118 148 26 6 chr11 3095454 3096117 -145687355 + L1PA13 LINE L1 5482 6157 -6 767 119 0 9 chr11 3096210 3096319 -145687153 + L1PA13 LINE L1 5777 5884 -279 235 257 14 57 chr11 3096319 3096389 -145687083 + MLT1I LTR MaLR 177 243 -166 21 36 0 0 chr11 3096453 3096481 -145686991 + AT_rich Low_complexity Low_complexity 1 28 0 392 237 44 51 chr11 3096577 3096705 -145686767 + MLT1I LTR MaLR 278 439 -11 6939 117 26 16 chr11 3096923 3097920 -145685552 - LTR13 LTR ERVK 0 1007 1 10469 230 16 11 chr11 3097920 3100213 -145683259 - HERVK13 LTR ERVK 0 8116 5812 3715 231 126 12 chr11 3100207 3101172 -145682300 - HERVK13 LTR ERVK -2473 5643 4569 * 555 289 6 0 chr11 3101162 3101321 -145682151 - HERVK13 LTR ERVK -3990 4126 3967 * 1150 208 73 118 chr11 3101326 3101943 -145681529 - HERVK13 LTR ERVK -6814 1302 714 926 119 15 0 chr11 3101956 3102090 -145681382 - HERVK13 LTR ERVK -7907 209 74 906 179 0 6 chr11 3102318 3102480 -145680992 - L1P LINE L1 -1132 5014 4854 2223 162 65 25 chr11 3102487 3102931 -145680541 - L1MA8 LINE L1 -345 6967 6506 * 8671 220 112 28 chr11 3102908 3103128 -145680344 - L1MA8 LINE L1 -1431 5736 5536 2230 78 7 46 chr11 3103128 3103434 -145680038 - AluY SINE Alu -17 294 1 8671 220 112 28 chr11 3103434 3103920 -145679552 - L1MA8 LINE L1 -1631 5536 5093 1805 143 7 7 chr11 3103920 3104206 -145679266 - AluJb SINE Alu -15 297 12 8671 220 112 28 chr11 3104206 3107579 -145675893 - L1MA8 LINE L1 -2074 5093 1622 285 185 87 0 chr11 3108586 3108678 -145674794 + Charlie2 DNA MER1_type 2690 2789 -73 2254 198 105 7 chr11 3109719 3110149 -145673323 + MER70A LTR ERVL 1 472 0 1041 140 91 0 chr11 3110468 3110654 -145672818 - L1PA12 LINE L1 -2093 4053 3851 * 5228 151 51 7 chr11 3110651 3111243 -145672229 + L1PA12 LINE L1 4032 4681 -1465 507 175 0 0 chr11 3111243 3111323 -145672149 + MADE1 DNA Mariner 1 80 0 5228 151 51 7 chr11 3111323 3111656 -145671816 + L1PA12 LINE L1 4681 4998 -1148 2014 43 4 0 chr11 3111656 3111875 -145671597 + L1PA5 LINE L1 5919 6149 -5 5981 92 68 2 chr11 3111899 3112981 -145670491 + L1PA12 LINE L1 5020 6164 -4 1191 293 82 25 chr11 3113548 3114105 -145669367 - MLT2F LTR ERVL 0 628 7 217 306 197 0 chr11 3116142 3116325 -145667147 - MIR SINE MIR -30 232 14 946 110 0 0 chr11 3118670 3118797 -145664675 + L1PA14 LINE L1 6023 6149 -12 1767 113 13 0 chr11 3120752 3120991 -145662481 - AluSc SINE Alu -16 293 52 233 277 0 15 chr11 3122049 3122114 -145661358 + MIR SINE MIR 88 151 -111 423 0 0 0 chr11 3122521 3122568 -145660904 + (TG)n Simple_repeat Simple_repeat 2 48 0 190 250 73 15 chr11 3122801 3122869 -145660603 + MIR SINE MIR 123 194 -68 1505 113 50 4 chr11 3124039 3124299 -145659173 - L1PA8A LINE L1 -465 5666 5469 2657 112 32 10 chr11 3124320 3124723 -145658749 - L1PA8 LINE L1 -7 6165 5754 1092 242 125 50 chr11 3124723 3125140 -145658332 + MLT2B1 LTR ERVL 72 519 -1 312 182 91 0 chr11 3126022 3126088 -145657384 + L1MEc LINE L1 2312 2383 -4013 14761 178 103 47 chr11 3126150 3127800 -145655672 + L1MA1 LINE L1 16 1572 -5993 559 153 41 0 chr11 3127800 3127898 -145655574 + AluSg/x SINE Alu 211 312 0 14761 178 103 47 chr11 3127898 3129246 -145654226 + L1MA1 LINE L1 1572 2843 -4722 2495 117 45 17 chr11 3129246 3129598 -145653874 + THE1B LTR MaLR 1 362 -2 14761 178 103 47 chr11 3129598 3129774 -145653698 + L1MA1 LINE L1 2843 3008 -4557 2016 132 10 3 chr11 3129774 3130070 -145653402 + AluSx SINE Alu 1 298 -14 14761 178 103 47 chr11 3130070 3130760 -145652712 + L1MA1 LINE L1 3008 3658 -3907 1786 236 126 37 chr11 3130760 3131269 -145652203 + MLT2B3 LTR ERVL 1 554 0 14761 178 103 47 chr11 3131269 3131575 -145651897 + L1MA1 LINE L1 3658 4517 -3048 1423 129 62 17 chr11 3131544 3131934 -145651538 + L1MA1 LINE L1 6673 7044 -677 * 1843 153 81 36 chr11 3131934 3132293 -145651179 + THE1C LTR MaLR 1 375 0 1423 129 62 17 chr11 3132293 3132848 -145650624 + L1MA1 LINE L1 7044 7721 0 714 251 100 39 chr11 3132855 3133265 -145650207 + L1MEc LINE L1 2380 2814 -3401 256 188 50 38 chr11 3133282 3133362 -145650110 - L1 LINE L1 -2635 3511 3431 2088 263 91 12 chr11 3133368 3134189 -145649283 - L1P LINE L1 -2762 3384 2499 949 201 51 55 chr11 3134195 3134252 -145649220 + L1MA9 LINE L1 5512 5568 -744 1305 179 236 23 chr11 3134252 3134603 -145648869 - MSTA LTR MaLR -2 426 1 949 201 51 55 chr11 3134603 3134819 -145648653 + L1MA9 LINE L1 5568 5784 -528 949 228 166 13 chr11 3134823 3135209 -145648263 + L1MA9 LINE L1 5825 6269 -43 36372 93 21 17 chr11 3135295 3138569 -145644903 + L1PA6 LINE L1 2 3315 -2839 2392 90 0 3 chr11 3138569 3138880 -145644592 + AluY SINE Alu 2 311 0 36372 93 21 17 chr11 3138880 3141728 -145641744 + L1PA6 LINE L1 3315 6150 -4 239 325 136 31 chr11 3141884 3142075 -145641397 - L2 LINE L2 -2728 586 376 205 337 51 10 chr11 3142229 3142327 -145641145 + MIR SINE MIR 66 167 -95 828 191 82 0 chr11 3142328 3142475 -145640997 + FRAM SINE Alu 1 151 -25 2792 157 29 15 chr11 3142529 3143008 -145640464 + L1PB2 LINE L1 5663 6148 -3 289 300 20 30 chr11 3144546 3144646 -145638826 - MIR SINE MIR -140 122 24 23 0 0 0 chr11 3145604 3145627 -145637845 + AT_rich Low_complexity Low_complexity 1 23 0 182 376 116 29 chr11 3145640 3145986 -145637486 - L2 LINE L2 -41 3231 2856 692 266 71 38 chr11 3147101 3147531 -145635941 - LTR33 LTR ERVL -40 481 10 386 287 64 44 chr11 3150935 3151157 -145632315 - MIR SINE MIR -15 247 15 534 299 117 28 chr11 3152150 3152508 -145630964 + LTR16B LTR ERVL 15 404 -60 7513 28 14 29 chr11 3152545 3153903 -145629569 - L1PA4 LINE L1 -3 6152 4789 257 339 112 13 chr11 3153927 3154160 -145629312 + HERV16 LTR ERVL 313 568 -4428 305 252 73 24 chr11 3154259 3154382 -145629090 + HERV16 LTR ERVL 719 847 -4149 1906 140 107 6 chr11 3154414 3154742 -145628730 + LTR1B LTR ERV1 44 404 -422 1023 224 38 0 chr11 3154739 3154949 -145628523 + LTR1B LTR ERV1 599 816 -10 * 2460 216 67 34 chr11 3154951 3155507 -145627965 + HUERS-P2 LTR ERV1 2 575 -2513 * 13333 146 55 49 chr11 3155504 3157878 -145625594 + HUERS-P2 LTR ERV1 701 3088 0 4476 152 58 14 chr11 3157878 3158661 -145624811 + LTR1B LTR ERV1 1 817 -9 334 364 94 19 chr11 3158840 3159148 -145624324 + HERV16 LTR ERVL 1246 1576 -3420 396 303 98 0 chr11 3159319 3159451 -145624021 + HERV16 LTR ERVL 1854 1998 -2998 1294 319 91 20 chr11 3159680 3160715 -145622757 + HERV16 LTR ERVL 2543 3654 -2000 503 349 53 11 chr11 3160734 3161015 -145622457 + HERV16 LTR ERVL 3400 3692 -1304 692 319 85 54 chr11 3161033 3161864 -145621608 + HERV16 LTR ERVL 4017 4906 -612 348 283 87 91 chr11 3161919 3162413 -145621059 + HERV16 LTR ERVL 4505 4996 0 739 307 101 4 chr11 3162413 3162690 -145620782 + LTR16B LTR ERVL 1 304 -160 27312 126 40 61 chr11 3162988 3169305 -145614167 + L1PA8 LINE L1 1 6169 -3 412 195 62 70 chr11 3170076 3170204 -145613268 + MER34B LTR ERV1 5 131 -434 370 177 177 10 chr11 3170437 3170533 -145612939 + MER34B LTR ERV1 450 561 -4 1815 120 106 0 chr11 3171305 3171580 -145611892 - AluSp SINE Alu -9 304 1 3380 137 131 17 chr11 3171955 3172648 -145610824 - MER4E LTR ERV1 -7 772 1 1205 128 11 6 chr11 3172822 3173002 -145610470 + LTR1B LTR ERV1 1 181 -645 2762 120 84 50 chr11 3173357 3173882 -145609590 + LTR1B LTR ERV1 282 824 -2 1029 276 138 58 chr11 3174622 3175353 -145608119 + HERV16 LTR ERVL 1841 2630 -2366 338 215 25 13 chr11 3175390 3175469 -145608003 + MER3 DNA MER1_type 29 108 -101 1162 244 95 15 chr11 3176337 3176738 -145606734 - L1 LINE L1 -3389 2757 2325 586 217 151 7 chr11 3176905 3177057 -145606415 + MLT1A1 LTR MaLR 1 174 -191 713 162 184 11 chr11 3177614 3177793 -145605679 - L1PB4 LINE L1 -4 6152 5943 1003 159 19 0 chr11 3178323 3178480 -145604992 - AluSp SINE Alu -17 296 137 2165 117 7 3 chr11 3178480 3178779 -145604693 - AluSc SINE Alu -9 300 1 220 216 0 0 chr11 3179339 3179390 -145604082 + A-rich Low_complexity Low_complexity 1 51 0 1834 131 3 11 chr11 3179391 3179673 -145603799 - AluSp SINE Alu -33 280 1 847 329 54 19 chr11 3180840 3181250 -145602222 - LTR16A LTR ERVL 0 450 27 3557 147 65 7 chr11 3181321 3181901 -145601571 - LTR18B LTR ERVL 0 614 1 180 77 0 0 chr11 3182638 3182664 -145600808 + (CA)n Simple_repeat Simple_repeat 1 26 0 362 312 24 0 chr11 3183266 3183391 -145600081 - MLT1F1 LTR MaLR -372 195 68 218 322 91 16 chr11 3185128 3185249 -145598223 + MIR SINE MIR 105 234 -28 22 0 0 0 chr11 3186269 3186291 -145597181 + AT_rich Low_complexity Low_complexity 1 22 0 2023 131 23 7 chr11 3186291 3186597 -145596875 - AluSx SINE Alu -1 311 1 278 225 45 81 chr11 3186764 3186875 -145596597 + L1ME3 LINE L1 6048 6154 -8 259 182 45 34 chr11 3187033 3187121 -145596351 + L1M4 LINE L1 3174 3262 -2884 581 326 38 4 chr11 3188826 3189065 -145594407 - MIR SINE MIR -14 248 2 294 310 39 26 chr11 3192694 3192849 -145590623 + MIR SINE MIR 105 261 -1 240 277 0 96 chr11 3193974 3194068 -145589404 + L1ME3 LINE L1 6046 6130 -32 612 304 78 4 chr11 3196030 3196260 -145587212 - MIR SINE MIR -14 248 2 22 35 0 0 chr11 3197208 3197237 -145586235 + AT_rich Low_complexity Low_complexity 1 29 0 3766 34 0 2 chr11 3199846 3200290 -145583182 + L1PA4 LINE L1 5713 6155 0 233 297 47 0 chr11 3201921 3201985 -145581487 - L2 LINE L2 -51 3221 3155 2357 78 0 3 chr11 3203078 3203373 -145580099 + AluY SINE Alu 1 294 -17 215 330 106 11 chr11 3206913 3207007 -145576465 - MIR SINE MIR -75 133 31 534 204 10 19 chr11 3207540 3207643 -145575829 + MER5A DNA MER1_type 9 110 -79 470 287 139 3 chr11 3207804 3208001 -145575471 - MIR SINE MIR -27 235 15 192 238 71 0 chr11 3208478 3208520 -145574952 + MIR SINE MIR 105 149 -59 367 259 89 30 chr11 3210255 3210390 -145573082 + L2 LINE L2 3129 3271 -1 505 203 62 23 chr11 3210468 3210596 -145572876 - MIR SINE MIR 0 262 130 396 204 29 48 chr11 3211075 3211178 -145572294 + L2 LINE L2 3169 3269 -44 320 244 150 33 chr11 3211406 3211619 -145571853 + HAL1 LINE L1 2270 2507 0 261 0 0 0 chr11 3212578 3212607 -145570865 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 228 349 66 9 chr11 3213204 3213310 -145570162 - L2 LINE L2 -15 3257 3146 252 0 0 0 chr11 3214620 3214648 -145568824 + (TG)n Simple_repeat Simple_repeat 1 28 0 24 0 0 0 chr11 3214953 3214977 -145568495 + AT_rich Low_complexity Low_complexity 1 24 0 231 227 34 11 chr11 3215113 3215201 -145568271 + T-rich Low_complexity Low_complexity 5 94 0 342 337 59 19 chr11 3215676 3216030 -145567442 - LTR67 LTR ERVL -19 538 137 456 323 45 45 chr11 3216157 3216423 -145567049 + MLT1I LTR MaLR 98 363 -46 275 297 42 34 chr11 3216458 3216576 -145566896 - LTR67 LTR ERVL -437 120 2 1076 48 0 0 chr11 3216867 3216993 -145566479 + L1PA4 LINE L1 6027 6152 -3 22 35 0 0 chr11 3216993 3217022 -145566450 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 3217069 3217090 -145566382 + AT_rich Low_complexity Low_complexity 1 21 0 1362 203 22 120 chr11 3217287 3217687 -145565785 - MLT1A1 LTR MaLR 0 365 5 195 375 71 5 chr11 3219302 3219486 -145563986 - L2 LINE L2 -1647 1667 1472 746 284 50 0 chr11 3219620 3219821 -145563651 + LTR16C LTR ERVL 150 360 -131 346 277 134 9 chr11 3219814 3219926 -145563546 + LTR16C LTR ERVL 237 362 -129 * 816 74 0 40 chr11 3219927 3220076 -145563396 + (TCCCC)n Simple_repeat Simple_repeat 3 145 0 14453 104 40 17 chr11 3220178 3222473 -145560999 - L1P LINE L1 -1882 4264 1917 5613 111 15 1 chr11 3222475 3223686 -145559786 + L1PA11 LINE L1 4801 6024 -150 303 190 0 147 chr11 3223689 3223805 -145559667 - LTR57-int LTR ERVL -4211 1132 1034 * 309 187 0 138 chr11 3223706 3223829 -145559643 - MER4-int LTR ERV1 -7021 1099 994 * 506 203 25 131 chr11 3223819 3224055 -145559417 - MER4-int LTR ERV1 -4554 2044 1834 876 236 69 29 chr11 3224055 3224301 -145559171 - MER34C LTR ERV1 -172 413 158 539 231 7 21 chr11 3224301 3224444 -145559028 - MER4-int LTR ERV1 -4132 991 851 2178 164 36 68 chr11 3224561 3225062 -145558410 - MER4-int LTR ERV1 -6705 832 348 2687 127 65 59 chr11 3225068 3225617 -145557855 + LTR9 LTR ERV1 1 766 -28 895 186 5 69 chr11 3225617 3225805 -145557667 + HUERS-P3b LTR ERV1 358 533 -6885 3116 161 63 14 chr11 3225839 3226409 -145557063 + HUERS-P3b LTR ERV1 742 1339 -7580 * 3594 121 0 4 chr11 3226401 3226896 -145556576 + HUERS-P3b LTR ERV1 1532 2024 -5394 1410 48 0 0 chr11 3226893 3227059 -145556413 + HUERS-P3b LTR ERV1 2477 2642 -4776 * 1612 155 49 0 chr11 3227059 3227323 -145556149 - LTR8 LTR ERV1 -250 441 165 376 272 24 0 chr11 3227445 3227570 -145555902 + LTR16C LTR ERVL 364 491 0 270 0 0 0 chr11 3227663 3227693 -145555779 + (T)n Simple_repeat Simple_repeat 1 30 0 2440 130 107 18 chr11 3228203 3228594 -145554878 - MSTA LTR MaLR -2 426 1 366 241 28 35 chr11 3228632 3228773 -145554699 + (CATATA)n Simple_repeat Simple_repeat 6 145 0 200 244 73 49 chr11 3228895 3228977 -145554495 + MIR SINE MIR 95 178 -84 291 304 13 0 chr11 3229188 3229267 -145554205 + L2 LINE L2 3187 3266 -6 1493 109 100 9 chr11 3230302 3230531 -145552941 + L1PB1 LINE L1 5900 6149 -2 801 168 35 0 chr11 3230681 3230824 -145552648 + MER57A LTR ERV1 1 148 -255 9366 24 0 0 chr11 3231179 3232260 -145551212 - L1P LINE L1 -867 5279 4199 3557 21 2 0 chr11 3232255 3232826 -145550646 + L1PA2 LINE L1 5406 6155 0 * 1218 202 32 4 chr11 3233071 3233318 -145550154 + MER57A LTR ERV1 150 403 0 1384 262 17 26 chr11 3233318 3233665 -145549807 + MER57A-int LTR ERV1 1 344 -7193 1114 157 6 0 chr11 3233666 3233838 -145549634 - LTR9 LTR ERV1 0 612 440 9908 104 24 11 chr11 3233860 3234650 -145548822 - HUERS-P3b LTR ERV1 -1733 5685 4867 2130 130 3 10 chr11 3234650 3234957 -145548515 - AluSx SINE Alu -7 305 1 9908 104 24 11 chr11 3234957 3235648 -145547824 - HUERS-P3b LTR ERV1 -2551 4867 4186 3318 78 32 34 chr11 3235646 3236118 -145547354 - HUERS-P3b LTR ERV1 -3875 3543 3073 * 2534 177 30 2 chr11 3236118 3236547 -145546925 + LTR8 LTR ERV1 1 441 -250 1410 48 0 0 chr11 3236547 3236713 -145546759 - HUERS-P3b LTR ERV1 -4776 2642 2477 * 3594 121 0 4 chr11 3236710 3237205 -145546267 - HUERS-P3b LTR ERV1 -5394 2024 1532 3116 161 63 14 chr11 3237197 3237767 -145545705 - HUERS-P3b LTR ERV1 -7580 1339 742 * 895 186 5 69 chr11 3237801 3237989 -145545483 - HUERS-P3b LTR ERV1 -6885 533 358 2687 127 65 59 chr11 3237989 3238538 -145544934 - LTR9 LTR ERV1 -28 766 1 2178 164 36 68 chr11 3238544 3239045 -145544427 + LOR1-int LTR ERV1 348 832 -6705 514 225 14 21 chr11 3239162 3239304 -145544168 + LOR1-int LTR ERV1 851 991 -4132 876 236 69 29 chr11 3239304 3239550 -145543922 + MER34C LTR ERV1 158 413 -172 506 203 25 131 chr11 3239550 3239786 -145543686 + LOR1-int LTR ERV1 1834 2044 -4554 309 187 0 138 chr11 3239776 3239899 -145543573 + LOR1-int LTR ERV1 994 1099 -7021 * 303 190 0 147 chr11 3239800 3239916 -145543556 + LTR57-int LTR ERVL 1034 1132 -4211 * 5613 111 15 1 chr11 3239919 3241130 -145542342 - L1PA11 LINE L1 -150 6024 4801 5844 92 18 23 chr11 3241132 3241988 -145541484 + L1P LINE L1 1917 2767 -3379 3128 94 0 9 chr11 3241989 3242413 -145541059 + L1P LINE L1 3823 4242 -1904 225 0 0 0 chr11 3242450 3242475 -145540997 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 216 97 0 0 chr11 3242508 3242539 -145540933 + (A)n Simple_repeat Simple_repeat 1 31 0 8626 95 17 0 chr11 3242547 3244466 -145539006 + L1PA8 LINE L1 4233 6168 -4 526 200 20 10 chr11 3244466 3244559 -145538913 - L1MC/D LINE L1 -654 5657 5561 565 238 8 8 chr11 3244705 3244827 -145538645 + L2 LINE L2 3191 3312 -1 1608 274 89 21 chr11 3244833 3245724 -145537748 - L1MC/D LINE L1 -1052 5163 4213 24 0 0 0 chr11 3246411 3246435 -145537037 + AT_rich Low_complexity Low_complexity 1 24 0 470 348 41 88 chr11 3246764 3247526 -145535946 - L2 LINE L2 -340 2974 2249 257 306 184 10 chr11 3247730 3248018 -145535454 + L2 LINE L2 1732 2069 -1245 228 163 0 0 chr11 3249120 3249163 -145534309 + (TG)n Simple_repeat Simple_repeat 2 44 0 2054 130 0 3 chr11 3250119 3250426 -145533046 - AluSg SINE Alu -3 307 2 183 333 111 26 chr11 3250440 3250557 -145532915 - MER5B DNA MER1_type -45 133 7 1530 92 0 0 chr11 3253719 3253914 -145529558 + AluSc SINE Alu 106 300 -9 318 265 39 10 chr11 3253980 3254082 -145529390 - L1MC/D LINE L1 -6135 261 157 248 310 28 14 chr11 3255678 3255820 -145527652 + (CTGGGG)n Simple_repeat Simple_repeat 3 146 0 547 298 104 26 chr11 3256065 3256581 -145526891 + L2 LINE L2 2684 3252 -61 209 133 0 0 chr11 3256696 3256726 -145526746 + L2 LINE L2 3019 3048 -265 228 260 52 0 chr11 3257842 3257919 -145525553 + MIR SINE MIR 118 198 -64 375 348 51 6 chr11 3258188 3258346 -145525126 + MIR SINE MIR 20 184 -78 240 345 73 18 chr11 3260750 3260915 -145522557 - L2 LINE L2 -375 2939 2766 763 275 37 20 chr11 3261125 3261369 -145522103 - MIR SINE MIR -13 249 2 1408 150 18 4 chr11 3262113 3262340 -145521132 + MER46A DNA MER2_type 1 230 -6 1592 235 28 43 chr11 3262596 3263056 -145520416 - LTR16A1 LTR ERVL -2 455 3 293 279 0 106 chr11 3265387 3265548 -145517924 - MIR SINE MIR -41 221 78 273 286 61 68 chr11 3265773 3265920 -145517552 - MER5B DNA MER1_type -30 148 3 202 255 28 166 chr11 3266315 3266460 -145517012 + L2 LINE L2 3123 3247 -25 667 287 135 45 chr11 3266465 3266820 -145516652 + MLT1J1 LTR MaLR 8 394 -52 964 348 91 55 chr11 3267109 3267747 -145515725 + L2 LINE L2 1556 2170 -1143 348 24 0 0 chr11 3267747 3267788 -145515684 + (CA)n Simple_repeat Simple_repeat 1 41 0 964 348 91 55 chr11 3267788 3268611 -145514861 + L2 LINE L2 2170 3062 -251 2175 117 0 3 chr11 3268656 3268964 -145514508 - AluSx SINE Alu -5 307 1 1675 246 96 25 chr11 3269017 3269589 -145513883 + MLT1E2 LTR MaLR 11 623 -3 213 329 13 40 chr11 3269637 3269713 -145513759 - L2 LINE L2 -58 3255 3182 494 213 89 78 chr11 3270083 3270507 -145512965 - LTR4 LTR ERV1 0 596 112 198 286 63 0 chr11 3271080 3271143 -145512329 - L2 LINE L2 -9 3263 3197 223 314 95 0 chr11 3271475 3271580 -145511892 + L2 LINE L2 2770 2884 -430 801 171 35 6 chr11 3273427 3273597 -145509875 - L1MA8 LINE L1 -2 6289 6115 198 0 0 0 chr11 3273599 3273621 -145509851 + (TCCC)n Simple_repeat Simple_repeat 3 24 0 228 182 0 0 chr11 3273627 3273671 -145509801 + CT-rich Low_complexity Low_complexity 2 45 0 1791 174 0 28 chr11 3273681 3274002 -145509470 - AluJo SINE Alu 0 312 1 184 250 16 31 chr11 3274230 3274294 -145509178 - MIR SINE MIR -40 222 160 2123 122 6 10 chr11 3274407 3274719 -145508753 + AluSp SINE Alu 1 311 -2 426 20 0 0 chr11 3274753 3274804 -145508668 + (TG)n Simple_repeat Simple_repeat 2 52 0 26 30 0 0 chr11 3275504 3275537 -145507935 + AT_rich Low_complexity Low_complexity 1 33 0 4923 148 52 9 chr11 3278289 3278688 -145504784 + L1MA9 LINE L1 5370 5751 -561 375 78 0 0 chr11 3278688 3278739 -145504733 + (CA)n Simple_repeat Simple_repeat 1 51 0 4923 148 52 9 chr11 3278739 3279188 -145504284 + L1MA9 LINE L1 5751 6254 -58 1392 165 0 0 chr11 3279190 3279414 -145504058 + L1PA16 LINE L1 5943 6166 0 421 171 0 0 chr11 3279416 3279492 -145503980 + L1MA9 LINE L1 6237 6312 0 894 205 72 0 chr11 3279501 3279696 -145503776 - L1MD1 LINE L1 -112 6524 6316 567 233 7 7 chr11 3279689 3279839 -145503633 - L1MD1 LINE L1 -873 5667 5518 * 3406 252 99 20 chr11 3279868 3280358 -145503114 - L1MD1 LINE L1 -1873 4667 4217 3507 153 53 14 chr11 3280358 3280394 -145503078 - L1MB2 LINE L1 -16 6155 6122 2391 86 7 3 chr11 3280394 3280698 -145502774 - AluSg SINE Alu -5 305 1 3507 153 53 14 chr11 3280698 3281288 -145502184 - L1MB2 LINE L1 -49 6122 5505 3406 252 99 20 chr11 3281288 3282205 -145501267 - L1MD1 LINE L1 -2323 4217 3149 2735 189 48 93 chr11 3282294 3283061 -145500411 - L1MD1 LINE L1 -5807 733 1 186 298 18 0 chr11 3283656 3283713 -145499759 + L2 LINE L2 3002 3059 -254 564 142 16 8 chr11 3284770 3284897 -145498575 + GA-rich Low_complexity Low_complexity 1 128 0 335 353 33 7 chr11 3285056 3285206 -145498266 - MIR SINE MIR 0 262 109 255 287 110 55 chr11 3285524 3285688 -145497784 - MIR3 SINE MIR -16 192 20 1192 174 0 94 chr11 3285815 3286103 -145497369 + L1MA10 LINE L1 6074 6334 0 264 260 144 33 chr11 3286453 3286586 -145496886 + MIR SINE MIR 18 168 -94 2379 75 0 28 chr11 3286586 3286904 -145496568 - AluSc SINE Alu 0 309 1 264 260 144 33 chr11 3286904 3286934 -145496538 + MIR SINE MIR 168 193 -69 489 302 53 11 chr11 3287324 3287513 -145495959 + LTR16C LTR ERVL 291 487 -4 2435 37 37 3 chr11 3287570 3287866 -145495606 + AluY SINE Alu 1 306 -5 293 246 84 53 chr11 3287897 3288077 -145495395 - LTR65 LTR ERV1 -6 663 292 2064 103 0 4 chr11 3288199 3288471 -145495001 + AluSq SINE Alu 1 271 -42 198 0 0 0 chr11 3288491 3288513 -145494959 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 1720 203 28 52 chr11 3288687 3288727 -145494745 - MLT2D LTR ERVL 0 414 375 225 108 0 0 chr11 3288727 3288764 -145494708 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 1720 203 28 52 chr11 3288764 3289147 -145494325 - MLT2D LTR ERVL -39 375 1 569 167 11 0 chr11 3289613 3289703 -145493769 - AluJ/FLAM SINE Alu -220 92 2 289 134 176 17 chr11 3289705 3289824 -145493648 - Charlie5 DNA MER1_type -49 2563 2426 3170 119 33 6 chr11 3289828 3290317 -145493155 - L1MB4 LINE L1 -1 6179 5678 2109 132 3 3 chr11 3290323 3290627 -145492845 - AluSx SINE Alu -8 304 1 217 278 69 0 chr11 3291399 3291471 -145492001 + L3 LINE CR1 1500 1576 -1 27 0 0 0 chr11 3291502 3291529 -145491943 + AT_rich Low_complexity Low_complexity 1 27 0 373 337 85 24 chr11 3291849 3292095 -145491377 + MIR SINE MIR 2 262 0 899 194 0 0 chr11 3292220 3292364 -145491108 - FRAM SINE Alu -27 149 6 2234 99 0 7 chr11 3292401 3292695 -145490777 + AluSc SINE Alu 1 292 -17 197 333 108 17 chr11 3294527 3294647 -145488825 - L2 LINE L2 -197 3075 2945 239 307 86 64 chr11 3296897 3297037 -145486435 - MIR SINE MIR -83 179 37 345 272 53 26 chr11 3297392 3297506 -145485966 - L2 LINE L2 0 3272 3156 205 269 87 91 chr11 3298937 3299179 -145484293 - L2 LINE L2 -1 3271 3031 2038 295 83 39 chr11 3299377 3300536 -145482936 - L2 LINE L2 -33 3280 2071 22 0 0 0 chr11 3301228 3301250 -145482222 + AT_rich Low_complexity Low_complexity 1 22 0 192 200 44 0 chr11 3301291 3301426 -145482046 + (TA)n Simple_repeat Simple_repeat 1 141 0 563 255 111 51 chr11 3301435 3301670 -145481802 + MIR SINE MIR 2 250 -12 271 344 8 16 chr11 3301861 3301983 -145481489 + MIR3 SINE MIR 87 207 -1 1160 136 35 0 chr11 3304384 3304583 -145478889 + L1MA6 LINE L1 6093 6298 -2 2478 65 0 3 chr11 3304771 3305078 -145478394 + AluY SINE Alu 1 306 -5 303 299 23 0 chr11 3305820 3305907 -145477565 + L1MC4 LINE L1 6615 6703 -1339 225 0 0 0 chr11 3305907 3305932 -145477540 + (CA)n Simple_repeat Simple_repeat 2 26 0 252 347 89 45 chr11 3306916 3307296 -145476176 + L2 LINE L2 1845 2241 -1073 207 240 0 20 chr11 3308219 3308269 -145475203 + MIR SINE MIR 42 90 -172 485 342 27 46 chr11 3308302 3308565 -145474907 - MIR SINE MIR -3 259 2 251 224 0 0 chr11 3308572 3308621 -145474851 + MIR SINE MIR 96 144 -118 193 282 0 64 chr11 3308843 3308921 -145474551 - L3b LINE CR1 -143 1440 1368 841 154 0 34 chr11 3309309 3309484 -145473988 - L1MB8 LINE L1 -3 6175 6007 636 335 33 5 chr11 3310256 3310471 -145473001 + L2 LINE L2 2451 2671 -643 1792 191 82 14 chr11 3310603 3311017 -145472455 + MLT1D LTR MaLR 1 442 -63 244 286 26 13 chr11 3311077 3311154 -145472318 - MIR SINE MIR -150 112 35 322 292 131 13 chr11 3312043 3312279 -145471193 + L1ME LINE L1 5561 5824 -297 964 200 117 38 chr11 3312511 3312857 -145470615 + MSTC LTR MaLR 1 428 0 271 411 6 13 chr11 3313167 3313325 -145470147 - L2 LINE L2 0 3272 3116 268 270 135 0 chr11 3313379 3313453 -145470019 + MER5A DNA MER1_type 26 109 -80 34 24 0 0 chr11 3313851 3313892 -145469580 + AT_rich Low_complexity Low_complexity 1 41 0 204 347 0 11 chr11 3313952 3314047 -145469425 - L2 LINE L2 -319 2953 2860 202 209 30 15 chr11 3314258 3314325 -145469147 + (TAA)n Simple_repeat Simple_repeat 2 69 0 308 291 163 20 chr11 3314339 3314535 -145468937 - MIR SINE MIR -2 260 37 252 366 27 9 chr11 3316636 3316748 -145466724 + MIR SINE MIR 22 135 -73 1724 100 58 4 chr11 3317039 3317279 -145466193 + AluSc SINE Alu 1 253 -56 180 0 0 0 chr11 3317304 3317324 -145466148 + (TGG)n Simple_repeat Simple_repeat 2 21 0 1839 134 3 58 chr11 3317626 3317939 -145465533 + AluJb SINE Alu 17 312 0 2277 174 76 8 chr11 3317954 3318789 -145464683 - L1MB1 LINE L1 -13 6155 5226 191 380 28 28 chr11 3319212 3319354 -145464118 + L2 LINE L2 2031 2172 -1142 793 291 14 9 chr11 3420189 3420677 -145362795 - L1MC/D LINE L1 -769 5590 5101 33 25 0 0 chr11 3425572 3425612 -145357860 + AT_rich Low_complexity Low_complexity 1 40 0 265 106 21 21 chr11 3428503 3428550 -145354922 + AluSp SINE Alu 136 182 -121 241 284 34 0 chr11 3429177 3429265 -145354207 - L1MA5 LINE L1 -369 5931 5841 414 0 0 0 chr11 3429709 3429755 -145353717 + (GGA)n Simple_repeat Simple_repeat 3 48 0 312 27 0 0 chr11 3430902 3430939 -145352533 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 265 106 21 21 chr11 3431681 3431728 -145351744 - AluSp SINE Alu -121 182 136 275 265 8 45 chr11 3432799 3432931 -145350541 + HERVK LTR ERVK 2515 2641 -3275 23 0 0 0 chr11 3432947 3432970 -145350502 + AT_rich Low_complexity Low_complexity 1 23 0 348 265 10 13 chr11 3432992 3433153 -145350319 + HERVK LTR ERVK 2976 3747 -3496 22 35 0 0 chr11 3433442 3433471 -145350001 + AT_rich Low_complexity Low_complexity 1 29 0 4245 275 21 6 chr11 3433587 3435202 -145348270 + L1 LINE L1 2624 4262 -1884 222 37 0 0 chr11 3435607 3435634 -145347838 + (CTTG)n Simple_repeat Simple_repeat 1 27 0 262 231 107 33 chr11 3436254 3436375 -145347097 + FRAM SINE Alu 37 166 0 380 83 33 0 chr11 3436552 3436612 -145346860 + (GAGAA)n Simple_repeat Simple_repeat 4 65 0 1363 320 14 15 chr11 3437768 3438958 -145344514 - L1MA5A LINE L1 -366 5931 4743 218 254 0 0 chr11 3439112 3439167 -145344305 + T-rich Low_complexity Low_complexity 4 58 0 6130 267 5 5 chr11 3439832 3442360 -145341112 - L1MA9 LINE L1 -381 5931 3402 204 40 0 0 chr11 3442604 3442629 -145340843 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 282 192 29 29 chr11 3442742 3442846 -145340626 - L1P LINE L1 -2347 3799 3696 524 293 45 28 chr11 3443874 3444345 -145339127 + L1 LINE L1 3108 3586 -2560 225 209 15 0 chr11 3444585 3444652 -145338820 - MLT2A1 LTR ERVL 0 444 377 1419 300 34 60 chr11 3445202 3446427 -145337045 + L1 LINE L1 3856 5048 -1098 342 153 0 0 chr11 3449571 3449630 -145333842 + (TA)n Simple_repeat Simple_repeat 2 60 0 240 221 0 26 chr11 3450786 3450863 -145332609 + (CAGAGA)n Simple_repeat Simple_repeat 6 80 0 183 80 0 0 chr11 3451092 3451117 -145332355 + (T)n Simple_repeat Simple_repeat 1 25 0 201 39 0 0 chr11 3451946 3451972 -145331500 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 284 204 116 14 chr11 3452947 3453085 -145330387 + AluS SINE Alu 3 95 -208 429 176 65 131 chr11 3453176 3453329 -145330143 + FLAM_C SINE Alu 1 143 0 323 259 95 20 chr11 3458615 3458794 -145324678 + AluSq/x SINE Alu 2 113 -189 22 80 0 0 chr11 3460584 3460634 -145322838 + AT_rich Low_complexity Low_complexity 1 50 0 243 0 0 0 chr11 3461149 3461176 -145322296 + (GTTTG)n Simple_repeat Simple_repeat 3 29 0 195 42 0 0 chr11 3461187 3461211 -145322261 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 333 211 105 11 chr11 3461261 3461356 -145322116 - AluSq/x SINE Alu -197 105 2 21 0 0 0 chr11 3461699 3461720 -145321752 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr11 3461873 3461914 -145321558 + AT_rich Low_complexity Low_complexity 1 41 0 501 319 51 24 chr11 3462975 3463458 -145320014 - L1M4 LINE L1 -959 5187 4719 336 24 0 0 chr11 3463458 3463499 -145319973 + (TTG)n Simple_repeat Simple_repeat 2 42 0 501 319 51 24 chr11 3463499 3463521 -145319951 - L1M4 LINE L1 -1427 4719 4699 189 0 0 0 chr11 3463521 3463542 -145319930 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 501 319 51 24 chr11 3463542 3463655 -145319817 - L1M4 LINE L1 -1447 4699 4552 286 260 73 57 chr11 3463855 3464032 -145319440 + AluJo SINE Alu 123 302 0 36 23 0 0 chr11 3466069 3466112 -145317360 + AT_rich Low_complexity Low_complexity 1 43 0 679 320 16 16 chr11 3467091 3467531 -145315941 + L1 LINE L1 4882 5321 -825 190 333 0 0 chr11 3467554 3467614 -145315858 + MIR SINE MIR 6 65 -197 28 29 0 0 chr11 3467697 3467732 -145315740 + AT_rich Low_complexity Low_complexity 1 35 0 295 228 109 0 chr11 3467952 3468044 -145315428 + FLAM_C SINE Alu 5 106 -27 1155 114 0 0 chr11 3468083 3468258 -145315214 + (GAGAA)n Simple_repeat Simple_repeat 4 178 0 279 0 0 0 chr11 3468258 3468289 -145315183 + (GGGGA)n Simple_repeat Simple_repeat 2 32 0 599 175 8 0 chr11 3468289 3468409 -145315063 + GA-rich Low_complexity Low_complexity 1 121 0 343 216 98 0 chr11 3468793 3468895 -145314577 + FLAM_C SINE Alu 2 113 -20 23 0 0 0 chr11 3470490 3470513 -145312959 + AT_rich Low_complexity Low_complexity 1 23 0 183 80 0 0 chr11 3470939 3470964 -145312508 + (CTTG)n Simple_repeat Simple_repeat 2 26 0 239 120 0 40 chr11 3471779 3471829 -145311643 + (GAAA)n Simple_repeat Simple_repeat 4 51 0 602 174 90 30 chr11 3473753 3473920 -145309552 - FRAM SINE Alu 0 176 1 23 33 0 0 chr11 3476936 3476966 -145306506 + AT_rich Low_complexity Low_complexity 1 30 0 1939 254 25 28 chr11 3477633 3478493 -145304979 - L1MA4 LINE L1 -375 5925 5066 2819 262 10 6 chr11 3478503 3479392 -145304080 + L1 LINE L1 3987 4879 -1267 823 308 42 35 chr11 3480144 3480924 -145302548 - L1M4 LINE L1 -960 5186 4395 405 0 0 0 chr11 3480924 3480969 -145302503 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 823 308 42 35 chr11 3480969 3481163 -145302309 - L1M4 LINE L1 -1751 4395 4204 333 0 0 0 chr11 3481263 3481300 -145302172 + (T)n Simple_repeat Simple_repeat 1 37 0 189 107 0 0 chr11 3481404 3481432 -145302040 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 188 317 0 0 chr11 3481525 3481585 -145301887 - MIR SINE MIR -197 65 6 643 221 14 27 chr11 3481638 3481843 -145301629 - L1MA7 LINE L1 -324 5976 5769 26 30 0 0 chr11 3481843 3481876 -145301596 + AT_rich Low_complexity Low_complexity 1 33 0 240 203 0 17 chr11 3481962 3482021 -145301451 - tRNA-Lys-AAA tRNA tRNA -13 63 6 203 59 0 29 chr11 3483056 3483090 -145300382 + (CAAAA)n Simple_repeat Simple_repeat 4 36 0 21 0 0 0 chr11 3483897 3483918 -145299554 + AT_rich Low_complexity Low_complexity 1 21 0 572 80 0 11 chr11 3485237 3485325 -145298147 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 482 178 121 45 chr11 3486595 3486752 -145296720 + FRAM SINE Alu 1 168 -8 225 0 0 0 chr11 3489324 3489349 -145294123 + (A)n Simple_repeat Simple_repeat 1 25 0 212 305 0 0 chr11 3489468 3489550 -145293922 + A-rich Low_complexity Low_complexity 1 82 0 270 116 0 0 chr11 3489665 3489708 -145293764 + (GAAAA)n Simple_repeat Simple_repeat 2 44 0 470 210 96 25 chr11 3492669 3492896 -145290576 + FRAM SINE Alu 2 239 0 600 53 0 0 chr11 3492896 3492972 -145290500 + (GGA)n Simple_repeat Simple_repeat 3 78 0 254 284 95 0 chr11 3493974 3494069 -145289403 + FLAM_C SINE Alu 3 106 -27 788 88 7 0 chr11 3494149 3494285 -145289187 + (CA)n Simple_repeat Simple_repeat 2 138 0 27 49 0 0 chr11 3495480 3495521 -145287951 + AT_rich Low_complexity Low_complexity 1 41 0 1125 226 4 0 chr11 3496107 3496373 -145287099 - L1MA7 LINE L1 -523 5657 5391 27 0 0 0 chr11 3496947 3496974 -145286498 + AT_rich Low_complexity Low_complexity 1 27 0 252 131 0 66 chr11 3497498 3497559 -145285913 + (CAAAAA)n Simple_repeat Simple_repeat 2 58 0 416 184 125 53 chr11 3497710 3497862 -145285610 + FRAM SINE Alu 1 162 -14 296 231 0 0 chr11 3497945 3498010 -145285462 - tRNA-Ala-GCG tRNA tRNA -10 65 1 202 206 15 44 chr11 3498047 3498115 -145285357 + MIR3 SINE MIR 1 66 -142 243 224 0 0 chr11 3498359 3498435 -145285037 + CT-rich Low_complexity Low_complexity 2 77 0 207 0 0 0 chr11 3500277 3500300 -145283172 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 552 249 10 24 chr11 3501301 3501510 -145281962 + L1 LINE L1 2155 2360 -3786 431 216 111 58 chr11 3503403 3503574 -145279898 + AluJo SINE Alu 120 299 -13 215 214 0 0 chr11 3504789 3504831 -145278641 + GA-rich Low_complexity Low_complexity 3 44 0 769 277 49 33 chr11 3506631 3507130 -145276342 + HERVK14 LTR ERVK 2666 3648 -2860 323 239 0 23 chr11 3507323 3507411 -145276061 + HERVK14 LTR ERVK 3565 3650 -3767 21 0 0 0 chr11 3507722 3507743 -145275729 + AT_rich Low_complexity Low_complexity 1 21 0 250 296 15 15 chr11 3507857 3507989 -145275483 + HERVK14 LTR ERVK 4655 4786 -3330 239 311 0 0 chr11 3508388 3508462 -145275010 + L1 LINE L1 4072 4145 -2001 21 0 0 0 chr11 3509262 3509283 -145274189 + AT_rich Low_complexity Low_complexity 1 21 0 267 31 0 0 chr11 3510762 3510794 -145272678 + (T)n Simple_repeat Simple_repeat 1 32 0 185 327 55 45 chr11 3512468 3512578 -145270894 - L2 LINE L2 -6 3266 3156 556 175 150 12 chr11 3514989 3515149 -145268323 - AluJo SINE Alu -10 302 121 225 154 0 0 chr11 3515667 3515706 -145267766 + (TA)n Simple_repeat Simple_repeat 1 39 0 256 208 0 26 chr11 3517236 3517313 -145266159 + (CAGAGA)n Simple_repeat Simple_repeat 6 80 0 560 129 10 0 chr11 3517975 3518076 -145265396 + (TTCC)n Simple_repeat Simple_repeat 3 104 0 2068 115 3 10 chr11 3518585 3518873 -145264599 - AluSx SINE Alu -26 286 1 33 25 0 0 chr11 3518986 3519026 -145264446 + AT_rich Low_complexity Low_complexity 1 40 0 194 309 0 29 chr11 3519052 3519120 -145264352 - MIR3 SINE MIR -142 66 1 639 39 0 0 chr11 3519484 3519562 -145263910 + (TTTC)n Simple_repeat Simple_repeat 2 79 0 8935 274 12 11 chr11 3520975 3525545 -145257927 + L1MA9 LINE L1 1991 6647 -381 231 308 0 0 chr11 3527861 3527926 -145255546 + C-rich Low_complexity Low_complexity 4 68 0 946 274 22 37 chr11 3528078 3528483 -145254989 - L1PA8 LINE L1 -296 5876 5478 832 250 142 36 chr11 3528129 3528545 -145254927 - L1ME3 LINE L1 -337 5825 5366 * 428 127 60 217 chr11 3528779 3528965 -145254507 + FLAM_C SINE Alu 3 162 0 569 144 117 64 chr11 3531562 3531750 -145251722 + AluJo SINE Alu 115 312 0 24 32 0 0 chr11 3532812 3532843 -145250629 + AT_rich Low_complexity Low_complexity 1 31 0 500 139 146 49 chr11 3533556 3533700 -145249772 + FRAM SINE Alu 1 157 -19 23 33 0 0 chr11 3534239 3534269 -145249203 + AT_rich Low_complexity Low_complexity 1 30 0 1178 34 7 0 chr11 3536603 3536750 -145246722 + (GAAAA)n Simple_repeat Simple_repeat 2 149 0 297 0 0 0 chr11 3536889 3536922 -145246550 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 348 24 0 0 chr11 3537183 3537224 -145246248 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 276 30 0 0 chr11 3537240 3537273 -145246199 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 409 179 105 11 chr11 3537320 3537415 -145246057 - AluSq/x SINE Alu -207 105 2 405 310 36 70 chr11 3539768 3540184 -145243288 + L1M2 LINE L1 1818 2219 -4630 372 203 14 142 chr11 3540480 3540628 -145242844 + FLAM_C SINE Alu 2 130 -3 21 36 0 0 chr11 3540628 3540656 -145242816 + AT_rich Low_complexity Low_complexity 1 28 0 2139 281 14 10 chr11 3542961 3543996 -145239476 - L1MA4 LINE L1 -370 5930 4892 7413 280 11 13 chr11 3544254 3547726 -145235746 - L1MA4 LINE L1 -1241 4905 1432 450 153 127 60 chr11 3548645 3548823 -145234649 - AluJo SINE Alu 0 320 130 183 42 0 0 chr11 3548823 3548847 -145234625 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 513 242 81 6 chr11 3550123 3550284 -145233188 - FRAM SINE Alu -3 173 1 25 31 0 0 chr11 3554177 3554209 -145229263 + AT_rich Low_complexity Low_complexity 1 32 0 198 0 0 0 chr11 3554370 3554392 -145229080 + (T)n Simple_repeat Simple_repeat 1 22 0 362 197 101 30 chr11 3554394 3554552 -145228920 - AluSq/x SINE Alu -197 105 2 449 181 85 0 chr11 3556058 3556152 -145227320 - AluSg SINE Alu -207 103 2 26 64 0 0 chr11 3556668 3556715 -145226757 + AT_rich Low_complexity Low_complexity 1 47 0 29 28 0 0 chr11 3558219 3558255 -145225217 + AT_rich Low_complexity Low_complexity 1 36 0 316 194 65 93 chr11 3560600 3560739 -145222733 - AluSp SINE Alu -168 135 1 197 160 0 40 chr11 3564767 3564817 -145218655 + (TATG)n Simple_repeat Simple_repeat 1 48 0 21 36 0 0 chr11 3565275 3565303 -145218169 + AT_rich Low_complexity Low_complexity 1 28 0 388 298 8 0 chr11 3566638 3566769 -145216703 + HERVK22 LTR ERVK 3617 3748 -3495 230 274 0 0 chr11 3567055 3567117 -145216355 + (CAGG)n Simple_repeat Simple_repeat 2 63 0 251 250 95 17 chr11 3567122 3567238 -145216234 + FRAM SINE Alu 42 166 0 2167 267 31 20 chr11 3567257 3568317 -145215155 + L1PA16 LINE L1 4861 5930 -236 428 210 115 25 chr11 3570044 3570231 -145213241 + AluJo SINE Alu 118 318 0 25 31 0 0 chr11 3570247 3570279 -145213193 + AT_rich Low_complexity Low_complexity 1 32 0 206 186 23 0 chr11 3570354 3570397 -145213075 + A-rich Low_complexity Low_complexity 6 49 0 657 0 0 0 chr11 3570622 3570695 -145212777 + (GGGA)n Simple_repeat Simple_repeat 1 73 0 307 187 22 22 chr11 3571303 3571394 -145212078 + (TCTG)n Simple_repeat Simple_repeat 1 91 0 251 155 35 35 chr11 3571742 3571800 -145211672 + tRNA-Lys-AAA tRNA tRNA 6 63 -13 250 244 13 64 chr11 3575397 3575475 -145207997 + HERVK22 LTR ERVK 3156 3229 -4887 1018 288 67 54 chr11 3575520 3576436 -145207036 + HERVK22 LTR ERVK 2483 3887 -2548 574 253 84 103 chr11 3577126 3578049 -145205423 + HERVK22 LTR ERVK 4261 4998 -947 207 0 0 0 chr11 3580741 3580764 -145202708 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 182 103 0 26 chr11 3580774 3580813 -145202659 + (CAAT)n Simple_repeat Simple_repeat 2 39 0 425 204 114 60 chr11 3582452 3582619 -145200853 - FRAM SINE Alu -1 175 1 1281 260 64 23 chr11 3584237 3584672 -145198800 - HERVR LTR ERV1 -2180 5212 4760 521 273 139 85 chr11 3584864 3585781 -145197691 - HERVR LTR ERV1 -3326 5652 3252 259 316 0 0 chr11 3585784 3585863 -145197609 - HERVR LTR ERV1 -3796 3596 3518 269 231 22 55 chr11 3586027 3586118 -145197354 - HERVR LTR ERV1 -5870 1522 1435 437 311 0 0 chr11 3587170 3587347 -145196125 - HERVR LTR ERV1 -6787 605 429 277 123 25 19 chr11 3589017 3589090 -145194382 - MLT2A1 LTR ERVL 0 444 380 380 0 0 98 chr11 3589607 3589668 -145193804 + (T)n Simple_repeat Simple_repeat 1 55 0 770 112 0 8 chr11 3590010 3590135 -145193337 + (TTTC)n Simple_repeat Simple_repeat 2 125 0 415 193 91 0 chr11 3590174 3590262 -145193210 - AluSg SINE Alu -213 97 2 26 0 0 0 chr11 3592734 3592760 -145190712 + AT_rich Low_complexity Low_complexity 1 26 0 186 217 50 50 chr11 3592843 3592903 -145190569 - MIR SINE MIR -197 65 6 249 292 81 19 chr11 3594269 3594430 -145189042 + Tigger1 DNA MER2_type 1960 2130 -288 22 0 0 0 chr11 3596080 3596102 -145187370 + AT_rich Low_complexity Low_complexity 1 22 0 861 120 0 0 chr11 3596116 3596249 -145187223 + (TTCC)n Simple_repeat Simple_repeat 1 133 0 1386 184 115 46 chr11 3696763 3697493 -145085979 - L1ME LINE L1 -552 5610 4837 24 53 0 0 chr11 3697543 3697581 -145085891 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr11 3697643 3697664 -145085808 + AT_rich Low_complexity Low_complexity 1 21 0 579 252 26 26 chr11 3698009 3698164 -145085308 - MIR SINE MIR -102 160 6 1081 153 0 0 chr11 3700852 3701028 -145082444 - L1MA2 LINE L1 -40 6264 6089 294 311 97 104 chr11 3701271 3701560 -145081912 + L2 LINE L2 2980 3266 -6 15740 154 36 5 chr11 3701742 3704043 -145079429 + L1MA1 LINE L1 609 3008 -4557 2133 116 0 0 chr11 3704043 3704327 -145079145 + AluSp SINE Alu 3 286 -27 15740 154 36 5 chr11 3704327 3704703 -145078769 + L1MA1 LINE L1 3008 3371 -4194 1776 159 184 11 chr11 3704703 3705068 -145078404 - MSTA LTR MaLR 0 428 1 6826 163 5 12 chr11 3705068 3706230 -145077242 - MSTA-int LTR MaLR 0 1580 427 7480 160 134 7 chr11 3706290 3709098 -145074374 + L1MA1 LINE L1 4534 7721 0 24 0 0 0 chr11 3709842 3709866 -145073606 + AT_rich Low_complexity Low_complexity 1 24 0 770 114 93 0 chr11 3709866 3710006 -145073466 - L1MA5A LINE L1 0 6297 6145 1631 113 4 4 chr11 3712236 3712501 -145070971 - L1MA4A LINE L1 -1 6302 6038 209 338 0 0 chr11 3712534 3712611 -145070861 + L2 LINE L2 2175 2251 -1063 21 0 0 0 chr11 3712861 3712882 -145070590 + AT_rich Low_complexity Low_complexity 1 21 0 31 26 0 0 chr11 3713092 3713130 -145070342 + AT_rich Low_complexity Low_complexity 1 38 0 31 26 0 0 chr11 3713282 3713320 -145070152 + AT_rich Low_complexity Low_complexity 1 38 0 1044 263 121 52 chr11 3713828 3714887 -145068585 + L1MEc LINE L1 1737 2859 -3356 3962 167 27 36 chr11 3714956 3715784 -145067688 + L1MA9 LINE L1 5491 6310 -2 1077 268 75 18 chr11 3715831 3716483 -145066989 + L1MEc LINE L1 3282 4034 -2181 * 38872 74 5 3 chr11 3716482 3721667 -145061805 + L1P LINE L1 6 5198 -948 224 383 14 46 chr11 3723572 3723789 -145059683 + L2 LINE L2 2733 2942 -372 296 359 0 10 chr11 3726782 3726885 -145056587 + L2 LINE L2 1121 1222 -2092 26 0 0 0 chr11 3726887 3726913 -145056559 + AT_rich Low_complexity Low_complexity 1 26 0 233 164 0 18 chr11 3727301 3727356 -145056116 + CT-rich Low_complexity Low_complexity 1 54 0 221 167 0 0 chr11 3727360 3727402 -145056070 + (TAG)n Simple_repeat Simple_repeat 2 43 0 378 304 65 42 chr11 3727994 3728162 -145055310 + L1M4b LINE L1 1238 1409 -5450 5187 133 5 10 chr11 3728170 3729114 -145054358 + L1PA11 LINE L1 4501 5435 -739 2239 120 7 0 chr11 3729114 3729415 -145054057 - AluSg SINE Alu -7 303 1 5187 133 5 10 chr11 3729415 3729970 -145053502 + L1PA11 LINE L1 5435 5992 -182 9511 56 0 4 chr11 3729970 3731961 -145051511 + L1PA5 LINE L1 4166 6154 0 339 289 57 54 chr11 3731961 3732311 -145051161 + L1M4b LINE L1 2518 2868 -4270 1045 334 93 35 chr11 3732336 3733100 -145050372 - L2 LINE L2 -806 2508 1701 558 269 27 32 chr11 3733742 3733928 -145049544 + MIR SINE MIR 78 262 0 22 0 0 0 chr11 3735284 3735306 -145048166 + AT_rich Low_complexity Low_complexity 1 22 0 562 236 55 18 chr11 3735435 3735600 -145047872 - MIR SINE MIR -14 248 78 218 203 31 31 chr11 3735655 3735719 -145047753 + (CAGAGA)n Simple_repeat Simple_repeat 4 67 0 737 249 53 0 chr11 3735832 3736021 -145047451 + MER3 DNA MER1_type 9 207 -2 275 85 21 0 chr11 3736268 3736315 -145047157 + (TG)n Simple_repeat Simple_repeat 1 48 0 1662 230 38 38 chr11 3737059 3737563 -145045909 - MLT1D LTR MaLR -1 504 1 772 239 29 34 chr11 3739287 3739496 -145043976 + MER3 DNA MER1_type 1 208 -1 1185 221 46 57 chr11 3739611 3739978 -145043494 - L1ME1 LINE L1 -19 6147 5785 22 0 0 0 chr11 3740091 3740113 -145043359 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 3740147 3740168 -145043304 + AT_rich Low_complexity Low_complexity 1 21 0 218 301 88 44 chr11 3740290 3740403 -145043069 + L2 LINE L2 3195 3312 -1 2041 128 0 0 chr11 3740680 3740962 -145042510 + AluSg SINE Alu 1 282 -28 447 245 128 41 chr11 3741251 3741447 -145042025 + MIR SINE MIR 49 261 -1 225 341 101 8 chr11 3743396 3743525 -145039947 + MIR SINE MIR 26 166 -96 21 0 0 0 chr11 3744761 3744782 -145038690 + AT_rich Low_complexity Low_complexity 1 21 0 339 260 91 67 chr11 3746432 3746640 -145036832 + MER46C DNA MER2_type 1 213 -125 1501 167 70 56 chr11 3747051 3747393 -145036079 + MER7A DNA MER2_type 2 346 0 21 0 0 0 chr11 3747991 3748012 -145035460 + AT_rich Low_complexity Low_complexity 1 21 0 438 361 17 22 chr11 3748056 3748286 -145035186 + MIR SINE MIR 12 240 -22 189 380 67 36 chr11 3749543 3749738 -145033734 - L2 LINE L2 -33 3239 3039 1535 181 78 6 chr11 3750968 3751288 -145032184 + MER2 DNA MER2_type 2 344 0 423 0 0 0 chr11 3752782 3752829 -145030643 + (TAA)n Simple_repeat Simple_repeat 2 48 0 1983 198 70 5 chr11 3752941 3753341 -145030131 - MSTB LTR MaLR 0 426 1 31 68 0 0 chr11 3755112 3755171 -145028301 + AT_rich Low_complexity Low_complexity 1 59 0 318 311 228 14 chr11 3755514 3755733 -145027739 + L2 LINE L2 2872 3137 -176 678 158 7 82 chr11 3755938 3756084 -145027388 + FLAM_C SINE Alu 6 140 -3 332 257 178 0 chr11 3756321 3756422 -145027050 - MIR SINE MIR -40 222 104 21 0 0 0 chr11 3756519 3756540 -145026932 + AT_rich Low_complexity Low_complexity 1 21 0 1373 175 51 25 chr11 3757768 3758042 -145025430 + AluJo SINE Alu 1 281 -31 691 280 86 76 chr11 3758916 3759226 -145024246 - L1MEc LINE L1 -3586 2629 2323 291 28 0 0 chr11 3759226 3759262 -145024210 + (CA)n Simple_repeat Simple_repeat 2 37 0 2178 118 3 0 chr11 3759267 3759564 -145023908 - AluSc SINE Alu -11 298 1 691 280 86 76 chr11 3759564 3760547 -145022925 - L1MEc LINE L1 -3895 2320 1366 315 0 0 0 chr11 3760954 3760989 -145022483 + (TG)n Simple_repeat Simple_repeat 2 36 0 527 361 51 16 chr11 3761001 3761256 -145022216 - LTR16A LTR ERVL -84 366 103 327 338 20 35 chr11 3761700 3761898 -145021574 - ERVL LTR ERVL -609 5155 4961 37 0 0 0 chr11 3761898 3761935 -145021537 + AT_rich Low_complexity Low_complexity 1 37 0 520 405 57 17 chr11 3762341 3763202 -145020270 - ERVL LTR ERVL -1195 4459 3565 2357 73 0 7 chr11 3763262 3763562 -145019910 - AluY SINE Alu -13 298 1 369 304 22 44 chr11 3764010 3764191 -145019281 - ERVL LTR ERVL -2429 2567 2391 1258 142 28 5 chr11 3764447 3764659 -145018813 - L1PA16 LINE L1 -234 5932 5716 236 121 61 15 chr11 3764658 3764724 -145018748 - L1M LINE L1 -2455 5330 5262 * 33 56 0 0 chr11 3765012 3765066 -145018406 + AT_rich Low_complexity Low_complexity 1 54 0 25 0 0 0 chr11 3765211 3765236 -145018236 + AT_rich Low_complexity Low_complexity 1 25 0 369 273 117 0 chr11 3766292 3766420 -145017052 - MIR SINE MIR -80 182 40 272 319 122 30 chr11 3766490 3766785 -145016687 + L2 LINE L2 1979 2300 -1014 189 415 12 0 chr11 3766918 3767000 -145016472 - L2 LINE L2 -3 3269 3187 36 40 0 0 chr11 3767737 3767787 -145015685 + AT_rich Low_complexity Low_complexity 1 50 0 245 211 141 0 chr11 3768593 3768664 -145014808 + MIR SINE MIR 124 204 -58 2211 103 3 19 chr11 3768911 3769221 -145014251 + AluSq SINE Alu 1 305 -8 229 303 0 13 chr11 3769247 3769323 -145014149 - L1ME LINE L1 -466 5655 5581 192 282 12 82 chr11 3770630 3770715 -145012757 - L2 LINE L2 -213 3059 2981 1626 272 22 20 chr11 3772085 3772589 -145010883 - MLT1D LTR MaLR 0 505 1 273 215 78 112 chr11 3772698 3772903 -145010569 + L2 LINE L2 3105 3302 -11 228 241 138 0 chr11 3773477 3773535 -145009937 + L2 LINE L2 3145 3210 -62 790 297 114 25 chr11 3773640 3774044 -145009428 + L2 LINE L2 2862 3301 -12 287 313 73 13 chr11 3774257 3774407 -145009065 - MIR SINE MIR -34 228 70 2466 183 122 7 chr11 3774733 3775301 -145008171 + LTR24C LTR ERV1 1 633 -2 226 298 37 106 chr11 3775848 3776036 -145007436 + L2 LINE L2 2898 3072 -200 781 291 65 58 chr11 3776205 3776634 -145006838 - MLT1G1 LTR MaLR -163 432 1 1022 86 50 0 chr11 3778141 3778280 -145005192 + AluY SINE Alu 1 146 -165 401 228 134 13 chr11 3778298 3778447 -145005025 + LTR33 LTR ERVL 205 371 -150 268 283 11 0 chr11 3778564 3778656 -145004816 + T-rich Low_complexity Low_complexity 4 96 0 352 298 50 16 chr11 3779157 3779278 -145004194 + L2 LINE L2 3148 3272 0 236 376 30 0 chr11 3779317 3779450 -145004022 - MIR SINE MIR -74 188 52 443 314 15 7 chr11 3780084 3780221 -145003251 - MIR SINE MIR -102 160 23 309 89 0 0 chr11 3783356 3783401 -145000071 + (TAAAA)n Simple_repeat Simple_repeat 5 49 0 23 33 0 0 chr11 3783792 3783822 -144999650 + AT_rich Low_complexity Low_complexity 1 30 0 1674 145 25 7 chr11 3783839 3784122 -144999350 - L1PB4 LINE L1 -7 6149 5862 490 347 44 28 chr11 3785414 3785662 -144997810 + MIR SINE MIR 5 256 -6 2314 84 7 0 chr11 3787482 3787780 -144995692 + AluSc SINE Alu 1 300 -9 231 328 138 45 chr11 3787805 3788202 -144995270 - L2 LINE L2 -1330 1984 1551 979 265 177 38 chr11 3790038 3790491 -144992981 + MLT1E LTR MaLR 1 516 -77 6717 132 2 1 chr11 3790548 3792395 -144991077 - L1PA10 LINE L1 -4 6164 4304 1334 135 0 34 chr11 3792444 3792681 -144990791 - MSTB1 LTR MaLR 0 432 204 207 100 0 0 chr11 3792681 3792711 -144990761 + (GA)n Simple_repeat Simple_repeat 2 31 0 4214 173 9 9 chr11 3792718 3793461 -144990011 - L1PB4 LINE L1 -4 6152 5407 1800 179 124 16 chr11 3793461 3793847 -144989625 + MSTA LTR MaLR 1 428 0 4214 173 9 9 chr11 3793847 3793862 -144989610 - L1PB4 LINE L1 -748 5408 5394 301 320 33 33 chr11 3793956 3794106 -144989366 + MIR SINE MIR 18 167 -95 184 400 0 0 chr11 3794187 3794267 -144989205 - MIR SINE MIR -135 127 48 1837 270 65 42 chr11 3794389 3795226 -144988246 - L1ME3A LINE L1 -9 6161 5306 1104 283 164 50 chr11 3795264 3796584 -144986888 - L1ME3A LINE L1 -1202 4944 3475 1322 302 65 20 chr11 3796763 3797451 -144986021 - L1ME3A LINE L1 -160 6010 5292 721 211 108 18 chr11 3797499 3797722 -144985750 + L1ME1 LINE L1 5502 5744 -422 310 271 0 0 chr11 3797743 3797850 -144985622 + (TA)n Simple_repeat Simple_repeat 1 107 0 1078 234 97 9 chr11 3797852 3798202 -144985270 + L1ME1 LINE L1 5781 6161 -5 25 31 0 0 chr11 3798232 3798264 -144985208 + AT_rich Low_complexity Low_complexity 1 32 0 943 284 105 20 chr11 3798267 3798301 -144985171 - MLT1G1 LTR MaLR -2 593 563 2114 126 24 48 chr11 3798301 3798674 -144984798 + THE1B LTR MaLR 1 364 0 11325 106 6 1 chr11 3798674 3800246 -144983226 + THE1B-int LTR MaLR 1 1580 0 2092 122 30 43 chr11 3800246 3800614 -144982858 + THE1B LTR MaLR 1 363 -1 943 284 105 20 chr11 3800614 3800919 -144982553 - MLT1G1 LTR MaLR -31 564 223 913 269 170 14 chr11 3800956 3801391 -144982081 + MLT1D LTR MaLR 3 505 0 487 184 0 0 chr11 3801417 3801515 -144981957 - L1MA6 LINE L1 0 6300 6203 285 189 0 0 chr11 3801520 3801573 -144981899 + L1MA6 LINE L1 6108 6160 -140 613 259 29 0 chr11 3801592 3801731 -144981741 - MLT1G1 LTR MaLR -451 144 2 348 265 122 0 chr11 3801745 3801843 -144981629 - MER81 DNA DNA 0 114 5 234 0 0 0 chr11 3803102 3803128 -144980344 + (T)n Simple_repeat Simple_repeat 1 26 0 190 358 119 50 chr11 3804417 3804635 -144978837 - MIR SINE MIR -10 252 20 2131 93 0 30 chr11 3805954 3806256 -144977216 + AluSg SINE Alu 10 302 -8 260 304 74 30 chr11 3806947 3807082 -144976390 - L2 LINE L2 -6 3307 3167 516 283 40 29 chr11 3807869 3808042 -144975430 + MIR SINE MIR 46 220 -42 414 57 0 0 chr11 3811966 3812019 -144971453 + (GA)n Simple_repeat Simple_repeat 2 54 0 196 356 77 66 chr11 3812326 3812691 -144970781 + L2 LINE L2 2889 3257 -15 277 282 70 49 chr11 3813203 3813345 -144970127 - L2 LINE L2 0 3313 3169 25 0 0 0 chr11 3813845 3813870 -144969602 + AT_rich Low_complexity Low_complexity 1 25 0 2198 153 52 41 chr11 3815299 3815718 -144967754 - MSTB LTR MaLR -2 424 1 7659 179 13 55 chr11 3815723 3817439 -144966033 - MSTB-int LTR MaLR -6 1645 1 2256 144 47 43 chr11 3817441 3817668 -144965804 - MSTB LTR MaLR -2 424 192 1907 119 7 7 chr11 3817668 3817988 -144965484 - AluSc SINE Alu 0 322 3 2256 144 47 43 chr11 3817988 3818181 -144965291 - MSTB LTR MaLR -234 192 1 245 313 25 0 chr11 3818414 3818494 -144964978 + L2 LINE L2 3224 3305 -8 31 88 0 0 chr11 3818747 3818827 -144964645 + AT_rich Low_complexity Low_complexity 1 80 0 1915 164 7 3 chr11 3820814 3820943 -144962529 + AluSx SINE Alu 1 128 -184 192 40 0 0 chr11 3820943 3820968 -144962504 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1915 164 7 3 chr11 3820968 3821137 -144962335 + AluSx SINE Alu 128 300 -12 21 0 0 0 chr11 3821429 3821450 -144962022 + AT_rich Low_complexity Low_complexity 1 21 0 721 274 18 18 chr11 3821475 3821698 -144961774 - MER58A DNA MER1_type -1 223 1 186 255 78 20 chr11 3821743 3821794 -144961678 + L2 LINE L2 3244 3297 -16 4188 54 0 0 chr11 3822257 3822814 -144960658 - L1P LINE L1 -3379 2767 2211 33 25 0 0 chr11 3823202 3823242 -144960230 + AT_rich Low_complexity Low_complexity 1 40 0 1624 66 0 0 chr11 3823278 3823491 -144959981 - L1PA6 LINE L1 -451 5703 5491 3516 57 0 2 chr11 3823491 3823918 -144959554 + L1PA6 LINE L1 5705 6141 -13 1760 202 0 3 chr11 3823954 3824256 -144959216 - AluJo SINE Alu -11 301 1 242 267 39 17 chr11 3824293 3824424 -144959048 - MIR SINE MIR -62 146 16 2082 140 6 17 chr11 3827350 3827699 -144955773 - L1PA15 LINE L1 -4 6161 5817 252 333 0 0 chr11 3828161 3828242 -144955230 - L2 LINE L2 -2035 1279 1199 300 106 0 45 chr11 3828370 3828436 -144955036 + (TATATG)n Simple_repeat Simple_repeat 5 67 0 863 188 30 99 chr11 3828505 3829103 -144954369 - MER4C LTR ERV1 -10 455 5 248 162 0 59 chr11 3829116 3829184 -144954288 + (TATATG)n Simple_repeat Simple_repeat 1 64 0 561 138 0 0 chr11 3829233 3829313 -144954159 - AluSq SINE Alu -91 222 143 775 130 7 43 chr11 3829519 3829677 -144953795 - FLAM_C SINE Alu 0 133 1 585 286 65 21 chr11 3829680 3830065 -144953407 + L1ME3 LINE L1 4850 5251 -895 525 297 0 47 chr11 3830080 3830336 -144953136 + L1ME3 LINE L1 5294 5537 -627 629 251 67 17 chr11 3830344 3830583 -144952889 + L1ME3 LINE L1 5583 5833 -329 4155 90 17 80 chr11 3830988 3831697 -144951775 - MER4A LTR ERV1 0 664 1 223 245 20 0 chr11 3831988 3832037 -144951435 + MER5A DNA MER1_type 57 106 -83 2232 202 47 2 chr11 3832121 3832650 -144950822 - L1 LINE L1 -3094 3052 2500 2124 78 0 25 chr11 3832846 3833127 -144950345 - AluY SINE Alu -3 308 35 34 0 0 0 chr11 3833218 3833252 -144950220 + AT_rich Low_complexity Low_complexity 1 34 0 315 327 31 38 chr11 3833275 3833434 -144950038 + HAL1b LINE L1 731 888 -460 1580 213 10 19 chr11 3833453 3833763 -144949709 + AluJb SINE Alu 1 307 -5 23 54 0 0 chr11 3833799 3833836 -144949636 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr11 3834974 3834995 -144948477 + AT_rich Low_complexity Low_complexity 1 21 0 196 349 63 68 chr11 3835022 3835659 -144947813 - L2 LINE L2 -688 2626 1993 1916 167 6 6 chr11 3835718 3836029 -144947443 - AluJb SINE Alu -1 311 1 397 344 84 26 chr11 3836318 3836545 -144946927 + MIR SINE MIR 22 261 -1 212 228 0 35 chr11 3836628 3836801 -144946671 + CT-rich Low_complexity Low_complexity 1 166 0 270 305 172 0 chr11 3836881 3837032 -144946440 + MIR SINE MIR 86 262 0 485 363 73 23 chr11 3839189 3839848 -144943624 - HERVL LTR ERVL -1467 4187 3496 319 363 31 44 chr11 3839905 3840359 -144943113 - HERVL LTR ERVL -3479 2175 1728 581 196 35 85 chr11 3842035 3842234 -144941238 - LTR41 LTR ERVL -7 766 578 533 220 66 70 chr11 3842671 3842930 -144940542 - LTR41 LTR ERVL -491 282 25 23 33 0 0 chr11 3843772 3843802 -144939670 + AT_rich Low_complexity Low_complexity 1 30 0 300 377 41 8 chr11 3844501 3844623 -144938849 + L2 LINE L2 3147 3272 0 330 286 70 60 chr11 3847574 3847773 -144935699 - MER58C DNA MER1_type -14 201 1 432 291 152 19 chr11 3849695 3849853 -144933619 + MER5A DNA MER1_type 10 188 -1 305 288 69 32 chr11 3850791 3850982 -144932490 + MIR3 SINE MIR 14 212 -50 21 71 0 0 chr11 3851047 3851089 -144932383 + AT_rich Low_complexity Low_complexity 1 42 0 215 158 26 0 chr11 3851315 3851353 -144932119 + CT-rich Low_complexity Low_complexity 2 40 0 357 24 0 0 chr11 3851354 3851396 -144932076 + (CA)n Simple_repeat Simple_repeat 2 43 0 268 365 63 16 chr11 3851789 3851978 -144931494 + MIR3 SINE MIR 10 207 -1 24 32 0 0 chr11 3852126 3852157 -144931315 + AT_rich Low_complexity Low_complexity 1 31 0 266 187 66 11 chr11 3852532 3852623 -144930849 + (TA)n Simple_repeat Simple_repeat 1 96 0 2145 80 60 30 chr11 3852804 3853103 -144930369 - AluSx SINE Alu -4 308 1 21 0 0 0 chr11 3853272 3853293 -144930179 + AT_rich Low_complexity Low_complexity 1 21 0 446 139 13 0 chr11 3853591 3853670 -144929802 + MADE1 DNA Mariner 1 80 0 1204 246 14 14 chr11 3853672 3853957 -144929515 - AluJo SINE Alu -17 295 11 333 294 56 21 chr11 3853968 3854111 -144929361 + L1MC/D LINE L1 5297 5444 -740 21 82 0 0 chr11 3854119 3854168 -144929304 + AT_rich Low_complexity Low_complexity 1 49 0 43 56 0 0 chr11 3854351 3854422 -144929050 + AT_rich Low_complexity Low_complexity 1 71 0 2364 100 3 3 chr11 3854491 3854802 -144928670 + AluY SINE Alu 1 311 0 300 328 17 0 chr11 3854954 3855073 -144928399 + L1MC/D LINE L1 5684 5804 -2004 1511 234 37 85 chr11 3855181 3855778 -144927694 + L1M1 LINE L1 8 575 -6990 3904 77 12 2 chr11 3855927 3856514 -144926958 - L1P LINE L1 -2286 3860 3268 218 200 0 0 chr11 3858509 3858554 -144924918 + A-rich Low_complexity Low_complexity 2 46 0 267 375 86 36 chr11 3858874 3859178 -144924294 - L3 LINE CR1 -5 1572 1254 255 341 72 7 chr11 3859183 3859321 -144924151 + L2 LINE L2 3158 3304 -9 31 0 0 0 chr11 3860117 3860148 -144923324 + AT_rich Low_complexity Low_complexity 1 31 0 256 274 48 25 chr11 3860999 3861202 -144922270 - L1M LINE L1 -766 5380 5188 417 267 185 20 chr11 3861543 3861689 -144921783 - MER5A DNA MER1_type -2 187 18 2338 89 0 22 chr11 3861863 3862178 -144921294 + AluSc SINE Alu 2 309 0 194 91 30 0 chr11 3862352 3862385 -144921087 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 304 337 56 59 chr11 3862429 3862735 -144920737 - L1M4 LINE L1 -1973 4173 3869 984 201 23 27 chr11 3863563 3863782 -144919690 - MER20 DNA MER1_type -1 218 1 287 281 61 35 chr11 3864346 3864460 -144919012 + MIR SINE MIR 33 149 -113 213 287 60 60 chr11 3865006 3865222 -144918250 - L2 LINE L2 0 3313 3098 417 198 0 23 chr11 3865680 3865766 -144917706 + L1PA16 LINE L1 5978 6061 -105 21 0 0 0 chr11 3868407 3868428 -144915044 + AT_rich Low_complexity Low_complexity 1 21 0 240 371 29 0 chr11 3868435 3868540 -144914932 - MIR SINE MIR -108 154 47 239 176 139 46 chr11 3868922 3869030 -144914442 + LTR38B LTR ERV1 1 118 -492 1826 111 19 8 chr11 3869143 3869404 -144914068 - AluSx SINE Alu -9 303 40 300 292 40 86 chr11 3869544 3869865 -144913607 + LTR38 LTR ERV1 291 556 0 317 89 40 40 chr11 3869986 3870087 -144913385 + (TCTA)n Simple_repeat Simple_repeat 2 102 0 2600 46 0 0 chr11 3870420 3870725 -144912747 + AluY SINE Alu 1 305 -6 6756 165 29 26 chr11 3872066 3873310 -144910162 - Ricksha_b DNA DNA -7 1247 1 210 71 95 0 chr11 3873486 3873528 -144909944 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 3862 83 2 0 chr11 3874533 3875065 -144908407 + L1P LINE L1 4329 4861 -1285 269 192 0 0 chr11 3875084 3875136 -144908336 + LTR49-int LTR ERV1 4994 5045 -1286 3524 123 18 5 chr11 3875136 3875957 -144907515 - L1PA11 LINE L1 -579 5595 4769 4105 118 2 5 chr11 3875957 3876552 -144906920 + L1PA11 LINE L1 5565 6163 -11 938 285 30 65 chr11 3876559 3877053 -144906419 + LTR49-int LTR ERV1 3764 4240 -696 1338 218 38 50 chr11 3877066 3877484 -144905988 + LTR37A LTR ERV1 4 416 -10 1401 214 13 105 chr11 3877552 3878076 -144905396 - MER31A LTR ERV1 -9 476 1 1350 210 68 87 chr11 3878199 3878670 -144904802 - MER31A-int LTR ERV1 -100 4836 4375 3270 205 53 13 chr11 3878746 3879540 -144903932 - MER31A-int LTR ERV1 -727 4209 3384 1296 226 57 17 chr11 3879541 3879943 -144903529 - MER31A-int LTR ERV1 -1763 3173 2756 3071 214 56 77 chr11 3880041 3882010 -144901462 - MER31A-int LTR ERV1 -2372 2564 654 337 313 57 60 chr11 3882013 3882348 -144901124 - L1M2b LINE L1 -5414 1795 1462 653 321 5 5 chr11 3882402 3882598 -144900874 - MER31A-int LTR ERV1 -4524 412 217 412 170 85 32 chr11 3882605 3882699 -144900773 - MER31A-int LTR ERV1 -4670 266 168 604 209 102 53 chr11 3882887 3883107 -144900365 - MER31A LTR ERV1 -2 483 253 1940 180 43 38 chr11 3883107 3883529 -144899943 - MSTB1 LTR MaLR 0 432 9 682 237 73 78 chr11 3883535 3883780 -144899692 - MER31B LTR ERV1 -222 244 1 22 0 0 0 chr11 3883894 3883916 -144899556 + AT_rich Low_complexity Low_complexity 1 22 0 2946 66 5 0 chr11 3886206 3886586 -144896886 + L1PA10 LINE L1 5776 6157 -11 884 339 37 15 chr11 3888635 3889036 -144894436 - LTR16A LTR ERVL 0 450 41 1875 164 24 34 chr11 3889357 3889736 -144893736 + THE1C LTR MaLR 1 375 0 847 324 39 6 chr11 3890260 3890596 -144892876 + HERV16 LTR ERVL 736 1082 -3914 326 314 80 5 chr11 3890597 3890785 -144892687 + HERV16 LTR ERVL 1602 1803 -3193 395 330 38 28 chr11 3890830 3891442 -144892030 + HERV16 LTR ERVL 1906 2677 -2319 23 54 0 0 chr11 3891961 3891998 -144891474 + AT_rich Low_complexity Low_complexity 1 37 0 411 287 8 59 chr11 3892451 3892688 -144890784 + HAL1 LINE L1 2277 2501 -6 4770 149 107 70 chr11 3892723 3893907 -144889565 - Tigger3b DNA MER2_type -2 1229 2 236 316 13 13 chr11 3893948 3894027 -144889445 + MIR SINE MIR 63 141 -121 24 0 0 0 chr11 3894371 3894395 -144889077 + AT_rich Low_complexity Low_complexity 1 24 0 604 219 50 60 chr11 3894481 3894682 -144888790 - MIR SINE MIR -1 261 63 249 330 29 0 chr11 3896457 3896560 -144886912 - MIR SINE MIR -10 252 147 216 0 0 0 chr11 3896951 3896975 -144886497 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 204 193 60 133 chr11 3897965 3898048 -144885424 + L2 LINE L2 3237 3313 0 263 247 123 25 chr11 3898555 3898636 -144884836 - MIR SINE MIR -92 116 28 262 254 41 75 chr11 3899186 3899325 -144884147 + MIR SINE MIR 9 151 -57 23 0 0 0 chr11 3899792 3899815 -144883657 + AT_rich Low_complexity Low_complexity 1 23 0 335 0 0 41 chr11 3900321 3900370 -144883102 - L1PA3 LINE L1 0 6155 6109 251 379 110 9 chr11 3901407 3901734 -144881738 + LTR16A LTR ERVL 1 360 -90 24 0 0 0 chr11 3901999 3902023 -144881449 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr11 3902075 3902103 -144881369 + AT_rich Low_complexity Low_complexity 1 28 0 28 71 0 0 chr11 3902679 3902735 -144880737 + AT_rich Low_complexity Low_complexity 1 56 0 183 245 122 61 chr11 3903085 3903183 -144880289 - L3 LINE CR1 -1390 187 84 564 278 192 30 chr11 3903412 3903887 -144879585 + MLT1G LTR MaLR 22 573 -17 239 333 70 0 chr11 3904413 3904527 -144878945 - L2 LINE L2 0 3313 3192 279 53 70 0 chr11 3904670 3904727 -144878745 + T-rich Low_complexity Low_complexity 2 62 0 18886 29 0 0 chr11 3904730 3907753 -144875719 - L1PA2 LINE L1 -2 6153 3131 460 125 11 11 chr11 3908728 3908816 -144874656 + (TTCC)n Simple_repeat Simple_repeat 1 88 0 197 128 0 26 chr11 3908920 3908959 -144874513 + (GAAA)n Simple_repeat Simple_repeat 4 41 0 23 0 0 0 chr11 3910242 3910265 -144873207 + AT_rich Low_complexity Low_complexity 1 23 0 489 255 163 0 chr11 3910353 3910506 -144872966 + MER5A DNA MER1_type 12 189 0 276 224 250 0 chr11 3910869 3910985 -144872487 + MIR SINE MIR 117 261 -1 271 180 0 0 chr11 3911268 3911329 -144872143 - L1MA8 LINE L1 -4 6287 6227 22 0 0 0 chr11 3914469 3914491 -144868981 + AT_rich Low_complexity Low_complexity 1 22 0 423 83 0 0 chr11 3916830 3916890 -144866582 + (TG)n Simple_repeat Simple_repeat 1 60 0 1284 226 51 0 chr11 3918454 3918729 -144864743 + AluJo SINE Alu 10 298 -14 381 122 0 37 chr11 3918729 3918811 -144864661 + (GGA)n Simple_repeat Simple_repeat 1 79 0 25 31 0 0 chr11 3919004 3919036 -144864436 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr11 3919141 3919164 -144864308 + AT_rich Low_complexity Low_complexity 1 23 0 1381 170 49 61 chr11 3919249 3919578 -144863894 - MER44D DNA MER2_type 0 609 15 21 36 0 0 chr11 3919691 3919719 -144863753 + AT_rich Low_complexity Low_complexity 1 28 0 566 290 82 34 chr11 3919800 3920412 -144863060 + L1M4 LINE L1 4408 5047 -1099 * 3354 181 40 14 chr11 3920406 3921101 -144862371 + L1MA7 LINE L1 5491 6203 -88 409 141 76 0 chr11 3921204 3921296 -144862176 + L1MA7 LINE L1 6186 6284 -7 280 295 147 8 chr11 3921321 3921450 -144862022 - MIR SINE MIR -31 231 85 546 260 39 0 chr11 3921626 3921780 -144861692 + L1MCb LINE L1 570 729 -5316 1508 164 75 4 chr11 3921799 3922079 -144861393 - MER7A DNA MER2_type -1 345 48 1712 99 0 0 chr11 3922092 3922325 -144861147 - L1PA10 LINE L1 -168 6000 5768 1309 163 9 70 chr11 3922425 3922769 -144860703 + Ricksha DNA DNA 2922 3244 -7 2606 49 0 0 chr11 3924110 3924418 -144859054 - AluY SINE Alu -3 308 1 317 89 40 40 chr11 3924751 3924852 -144858620 + (TAGA)n Simple_repeat Simple_repeat 2 102 0 300 292 40 86 chr11 3924973 3925294 -144858178 - LTR38 LTR ERV1 0 564 291 1826 111 19 8 chr11 3925432 3925693 -144857779 + AluSx SINE Alu 40 303 -9 239 176 139 46 chr11 3925806 3925914 -144857558 - LTR38B LTR ERV1 -492 118 1 240 371 29 0 chr11 3926296 3926401 -144857071 + MIR SINE MIR 47 154 -108 21 0 0 0 chr11 3926408 3926429 -144857043 + AT_rich Low_complexity Low_complexity 1 21 0 362 205 0 12 chr11 3929073 3929156 -144854316 - L1PA16 LINE L1 -105 6061 5980 2166 110 0 7 chr11 3929311 3929603 -144853869 - AluSx SINE Alu -22 290 1 232 385 111 26 chr11 3929627 3930095 -144853377 + L2 LINE L2 2804 3311 -2 299 259 132 63 chr11 3930562 3930751 -144852721 - MIR SINE MIR -28 234 33 21 36 0 0 chr11 3931165 3931193 -144852279 + AT_rich Low_complexity Low_complexity 1 28 0 1020 194 17 0 chr11 3931806 3931986 -144851486 - AluJb SINE Alu -1 311 129 2433 86 0 6 chr11 3931988 3932302 -144851170 - AluSx SINE Alu 0 312 1 648 70 0 0 chr11 3932372 3932458 -144851014 + (TC)n Simple_repeat Simple_repeat 2 87 0 294 29 0 0 chr11 3932459 3932494 -144850978 - AluSp/q SINE Alu -21 282 248 1094 121 6 6 chr11 3932494 3932651 -144850821 - AluSx SINE Alu -155 157 1 204 182 0 0 chr11 3932697 3932741 -144850731 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 2562 45 3 0 chr11 3932877 3933186 -144850286 - AluY SINE Alu -1 310 1 724 146 48 24 chr11 3933855 3934020 -144849452 + ORSL DNA AcHobo 91 259 -16 23 0 0 0 chr11 3935746 3935769 -144847703 + AT_rich Low_complexity Low_complexity 1 23 0 400 279 79 57 chr11 3938293 3938558 -144844914 + L1M4 LINE L1 3198 3468 -2678 1331 297 66 30 chr11 3938716 3939773 -144843699 + L1M4 LINE L1 3588 4682 -1464 559 203 63 13 chr11 3941365 3941523 -144841949 + L1MA9 LINE L1 5939 6104 -208 341 161 0 0 chr11 3941651 3941707 -144841765 + L1MA9 LINE L1 6104 6159 -153 228 111 0 0 chr11 3941763 3941799 -144841673 + (TATATG)n Simple_repeat Simple_repeat 5 40 0 186 209 0 0 chr11 3942125 3942168 -144841304 + T-rich Low_complexity Low_complexity 1 43 0 485 71 14 0 chr11 3942171 3942241 -144841231 + (TTCC)n Simple_repeat Simple_repeat 2 72 0 224 130 22 0 chr11 3942244 3942290 -144841182 + CT-rich Low_complexity Low_complexity 2 48 0 456 77 0 0 chr11 3943658 3943723 -144839749 + (CA)n Simple_repeat Simple_repeat 1 65 0 30 27 0 0 chr11 3943907 3943944 -144839528 + AT_rich Low_complexity Low_complexity 1 37 0 333 279 90 23 chr11 3945865 3946115 -144837357 - LTR36 LTR ERV1 0 611 345 2113 131 0 0 chr11 3946199 3946504 -144836968 - AluSx SINE Alu -7 305 1 242 188 14 14 chr11 3946578 3946647 -144836825 - LTR36 LTR ERV1 -472 139 71 728 283 61 5 chr11 3947403 3947601 -144835871 - MER63A DNA MER1_type -1 209 1 1017 301 71 31 chr11 3947747 3948169 -144835303 + LTR16A LTR ERVL 1 439 -11 2354 201 126 24 chr11 3948248 3948906 -144834566 - MER50 LTR ERV1 0 734 10 310 204 121 25 chr11 3949083 3949240 -144834232 - L1M4 LINE L1 -897 5137 4966 316 172 60 48 chr11 3949243 3949370 -144834102 - LTR41 LTR ERVL -2 793 650 522 258 26 13 chr11 3949895 3950050 -144833422 - LTR41 LTR ERVL -616 157 1 2009 140 66 3 chr11 3950285 3950649 -144832823 + LTR34 LTR ERV1 313 699 0 336 223 39 31 chr11 3950718 3950848 -144832624 - L1M4 LINE L1 -1302 4732 4602 2171 137 5 39 chr11 3950896 3951284 -144832188 + THE1C LTR MaLR 1 375 0 2274 124 3 17 chr11 3951309 3951655 -144831817 + THE1C-int LTR MaLR 1240 1580 0 1745 162 90 9 chr11 3951657 3952002 -144831470 + THE1C LTR MaLR 3 375 0 330 303 60 0 chr11 3952096 3952281 -144831191 - L1M4 LINE L1 -1594 4440 4245 4023 137 32 33 chr11 3952548 3953276 -144830196 - LTR8A LTR ERV1 0 727 1 186 71 0 0 chr11 3953494 3953522 -144829950 + (CA)n Simple_repeat Simple_repeat 1 28 0 509 332 26 5 chr11 3954214 3954407 -144829065 - MIR SINE MIR -46 216 20 2419 84 0 3 chr11 3954412 3954723 -144828749 - AluSg SINE Alu 0 310 1 796 246 47 9 chr11 3954844 3955055 -144828417 - MER20 DNA MER1_type 0 219 1 218 336 199 0 chr11 3957501 3957647 -144825825 - MIR SINE MIR -21 241 67 235 370 71 28 chr11 3958627 3958838 -144824634 + L2 LINE L2 2460 2679 -635 225 345 48 12 chr11 3959141 3959225 -144824247 + L2 LINE L2 2998 3084 -188 763 165 0 0 chr11 3959392 3959507 -144823965 + FLAM_A SINE Alu 9 123 -19 1829 144 0 0 chr11 3959511 3959795 -144823677 + AluSc SINE Alu 22 305 0 262 356 20 45 chr11 3961834 3962036 -144821436 + L2 LINE L2 1767 1963 -1351 2904 201 86 24 chr11 3962044 3962834 -144820638 - L1MC3 LINE L1 0 7785 6947 2209 235 95 74 chr11 3962845 3963753 -144819719 - L1MEc LINE L1 -2646 3736 2789 1536 181 3 45 chr11 3963753 3964077 -144819395 + AluJo SINE Alu 3 314 0 2209 235 95 74 chr11 3964077 3964434 -144819038 - L1MEc LINE L1 -3593 2789 2441 4021 206 40 6 chr11 3964670 3964733 -144818739 - L1MA9 LINE L1 -75 6237 6178 230 0 33 0 chr11 3964733 3964763 -144818709 + (TG)n Simple_repeat Simple_repeat 2 32 0 4021 206 40 6 chr11 3964763 3965568 -144817904 - L1MA9 LINE L1 -134 6178 5339 2772 296 22 10 chr11 3965561 3967455 -144816017 - L1M4 LINE L1 -4401 1634 12 * 323 253 90 24 chr11 3967478 3967773 -144815699 - L1MEc LINE L1 -3953 2471 2110 5052 164 35 9 chr11 3967776 3968719 -144814753 - Tigger1 DNA MER2_type -6 2412 1446 8614 244 24 27 chr11 3968719 3974380 -144809092 + L1PA12 LINE L1 1 5113 -2471 2008 148 0 0 chr11 3974380 3974670 -144808802 + AluSx SINE Alu 1 290 -22 566 299 87 71 chr11 3974830 3975083 -144808389 - L1M4 LINE L1 -1505 4641 4394 3160 143 12 0 chr11 3975083 3975594 -144807878 - L1PA15 LINE L1 -4 6161 5645 3060 178 18 5 chr11 3975594 3976167 -144807305 + LTR22 LTR ERVK 1 580 0 566 299 87 71 chr11 3976167 3976616 -144806856 - L1M4 LINE L1 -1752 4394 3911 1429 113 102 4 chr11 3976616 3976891 -144806581 + L1MA3 LINE L1 6003 6304 -1 566 299 87 71 chr11 3976891 3977277 -144806195 - L1M4 LINE L1 -2235 3911 3533 235 296 45 34 chr11 3978110 3978198 -144805274 + MER5B DNA MER1_type 8 96 -82 1029 275 53 6 chr11 3978210 3978552 -144804920 - L1ME LINE L1 -391 5771 5414 1643 180 42 19 chr11 3978663 3979024 -144804448 - L1MA7 LINE L1 -129 6162 5794 341 316 137 0 chr11 3979113 3979325 -144804147 - L1ME LINE L1 -1058 5088 4848 256 281 0 47 chr11 3979326 3979390 -144804082 - MER5B DNA MER1_type -110 68 8 324 260 91 25 chr11 3979523 3979808 -144803664 - L1ME LINE L1 -2872 3274 2971 261 185 46 62 chr11 3980180 3980245 -144803227 - L2 LINE L2 0 3313 3250 252 309 52 16 chr11 3980904 3981030 -144802442 + MIR SINE MIR 45 176 -62 411 198 0 23 chr11 3983664 3983750 -144799722 - L1PA16 LINE L1 -105 6061 5978 199 319 85 32 chr11 3984330 3984424 -144799048 + L2 LINE L2 3174 3272 0 276 278 52 35 chr11 3984970 3985085 -144798387 - MIR SINE MIR -113 149 33 967 206 23 27 chr11 3985649 3985868 -144797604 + MER20 DNA MER1_type 1 218 -1 310 337 56 59 chr11 3986696 3987002 -144796470 + L1MB1 LINE L1 3869 4173 -1973 22 0 0 0 chr11 3987044 3987066 -144796406 + AT_rich Low_complexity Low_complexity 1 22 0 2223 95 0 23 chr11 3987242 3987548 -144795924 - AluSc SINE Alu -9 300 2 426 267 185 20 chr11 3987716 3987862 -144795610 + MER5A DNA MER1_type 18 187 -2 250 284 58 23 chr11 3988203 3988400 -144795072 + L1MB1 LINE L1 5188 5384 -747 31 0 0 0 chr11 3989257 3989288 -144794184 + AT_rich Low_complexity Low_complexity 1 31 0 264 364 40 7 chr11 3990084 3990235 -144793237 - L2 LINE L2 -9 3304 3149 * 284 359 92 43 chr11 3990227 3990531 -144792941 + L3 LINE CR1 1254 1572 -5 218 200 0 0 chr11 3990851 3990896 -144792576 + T-rich Low_complexity Low_complexity 2 46 0 1415 206 120 5 chr11 3992987 3993355 -144790117 + L1MB1 LINE L1 5768 6177 -12 27 0 0 0 chr11 3993364 3993391 -144790081 + AT_rich Low_complexity Low_complexity 1 27 0 416 202 0 12 chr11 3993395 3993479 -144789993 - MLT1C LTR MaLR -384 83 1 411 335 45 15 chr11 3993489 3993689 -144789783 + HAL1 LINE L1 1599 1804 -703 32 95 0 0 chr11 3994530 3994625 -144788847 + AT_rich Low_complexity Low_complexity 1 95 0 565 343 44 0 chr11 3994632 3994836 -144788636 - MIR SINE MIR -17 245 33 21 36 0 0 chr11 3995684 3995712 -144787760 + AT_rich Low_complexity Low_complexity 1 28 0 267 189 0 0 chr11 3998715 3998768 -144784704 + CT-rich Low_complexity Low_complexity 4 56 0 423 273 66 0 chr11 4000034 4000155 -144783317 - FLAM_A SINE Alu -4 129 1 22 0 0 0 chr11 4000283 4000305 -144783167 + AT_rich Low_complexity Low_complexity 1 22 0 387 0 0 0 chr11 4000383 4000426 -144783046 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 21 95 0 0 chr11 4000604 4000667 -144782805 + AT_rich Low_complexity Low_complexity 1 63 0 414 335 52 47 chr11 4000788 4001272 -144782200 - L1MEd LINE L1 -856 1634 1050 9838 155 42 16 chr11 4001338 4002277 -144781195 + Tigger1 DNA MER2_type 304 1217 -1201 1990 95 23 36 chr11 4002277 4002582 -144780890 - AluSc SINE Alu -8 301 1 9838 155 42 16 chr11 4002582 4003549 -144779923 + Tigger1 DNA MER2_type 1217 2323 -95 2017 170 100 0 chr11 4003549 4003938 -144779534 - MSTC LTR MaLR 0 428 1 9838 155 42 16 chr11 4003938 4004037 -144779435 + Tigger1 DNA MER2_type 2323 2418 0 462 332 14 36 chr11 4004488 4004711 -144778761 - MIR SINE MIR -34 228 11 21 0 0 0 chr11 4005027 4005048 -144778424 + AT_rich Low_complexity Low_complexity 1 21 0 180 200 0 0 chr11 4005639 4005684 -144777788 + CT-rich Low_complexity Low_complexity 2 46 0 24 0 0 0 chr11 4005709 4005733 -144777739 + AT_rich Low_complexity Low_complexity 1 24 0 266 164 0 16 chr11 4008243 4008304 -144775168 + CT-rich Low_complexity Low_complexity 3 62 0 22 80 0 0 chr11 4009232 4009282 -144774190 + AT_rich Low_complexity Low_complexity 1 50 0 22 70 0 0 chr11 4009739 4009782 -144773690 + AT_rich Low_complexity Low_complexity 1 43 0 2539 182 11 17 chr11 4009783 4010304 -144773168 - L1PA16 LINE L1 -4 6162 5645 656 97 0 19 chr11 4010701 4010804 -144772668 + L1MA2 LINE L1 6197 6297 -7 22 0 0 0 chr11 4010824 4010846 -144772626 + AT_rich Low_complexity Low_complexity 1 22 0 356 322 24 10 chr11 4010874 4011079 -144772393 + L1MD1 LINE L1 4657 4864 -1282 1708 252 56 12 chr11 4011575 4012091 -144771381 - L1MB8 LINE L1 -42 6136 5598 * 2718 204 105 24 chr11 4012086 4012827 -144770645 + L1MD1 LINE L1 5404 6204 -38 23 0 0 0 chr11 4012844 4012867 -144770605 + AT_rich Low_complexity Low_complexity 1 23 0 504 284 36 13 chr11 4012886 4013111 -144770361 - L1MEc LINE L1 -3457 2758 2529 776 302 101 21 chr11 4013132 4013645 -144769827 - L1MEc LINE L1 -3918 2478 1925 261 276 0 0 chr11 4013711 4013769 -144769703 + Tigger3(Golem) DNA MER2_type 1 58 -2971 2908 147 8 25 chr11 4013774 4014283 -144769189 + Tigger3(Golem) DNA MER2_type 2529 3028 -1 389 264 31 109 chr11 4014366 4014559 -144768913 + MER58A DNA MER1_type 27 204 -20 610 125 62 0 chr11 4014787 4014883 -144768589 - AluSq/x SINE Alu -206 107 6 2245 75 0 0 chr11 4014897 4015209 -144768263 - AluY SINE Alu 0 312 1 459 289 30 6 chr11 4015235 4015401 -144768071 - L1M4 LINE L1 -1795 5770 5601 4461 54 0 14 chr11 4015408 4015986 -144767486 - L1PA8 LINE L1 -5 6167 5598 1245 72 0 0 chr11 4015986 4016153 -144767319 + L1PA8 LINE L1 5416 5582 -590 714 268 44 12 chr11 4016158 4016408 -144767064 - L1M4 LINE L1 -1988 5577 5320 26 50 0 0 chr11 4016463 4016503 -144766969 + AT_rich Low_complexity Low_complexity 1 40 0 1155 226 7 14 chr11 4018514 4018801 -144764671 - L1MC3 LINE L1 0 7785 7501 1383 131 5 5 chr11 4019154 4019360 -144764112 + AluSg/x SINE Alu 95 300 -12 1890 154 0 3 chr11 4021651 4021943 -144761529 - AluSx SINE Alu -19 293 3 1047 224 94 31 chr11 4022948 4023328 -144760144 - L1MCc LINE L1 -4157 3409 2785 364 20 0 0 chr11 4023465 4023514 -144759958 + L1PA15 LINE L1 6110 6158 -7 252 265 105 50 chr11 4023670 4023851 -144759621 + L2 LINE L2 1813 2003 -1311 325 298 0 8 chr11 4023854 4023975 -144759497 + (TA)n Simple_repeat Simple_repeat 1 120 0 257 275 0 0 chr11 4023982 4024062 -144759410 + L1MC4 LINE L1 6624 6703 -1339 259 51 26 0 chr11 4024309 4024348 -144759124 + L1PA13 LINE L1 6111 6150 -13 324 209 26 26 chr11 4024354 4024469 -144759003 + (TA)n Simple_repeat Simple_repeat 2 116 0 447 356 108 53 chr11 4024473 4025184 -144758288 + L2 LINE L2 2031 2780 -534 21 57 0 0 chr11 4026586 4026621 -144756851 + AT_rich Low_complexity Low_complexity 1 35 0 674 262 69 57 chr11 4027182 4027453 -144756019 + MLT1D LTR MaLR 88 354 -151 36 23 0 0 chr11 4027795 4027838 -144755634 + AT_rich Low_complexity Low_complexity 1 43 0 186 428 11 0 chr11 4028935 4029034 -144754438 - MIR SINE MIR -61 147 50 339 25 0 0 chr11 4029386 4029426 -144754046 + (CA)n Simple_repeat Simple_repeat 2 41 0 315 258 0 43 chr11 4032833 4032926 -144750546 - L1MCc LINE L1 -5517 1530 1442 532 305 147 31 chr11 4033017 4033466 -144750006 - L1MCc LINE L1 -5850 1197 697 215 317 143 19 chr11 4033618 4033779 -144749693 + MER5A DNA MER1_type 4 184 -5 195 100 0 0 chr11 4033920 4033950 -144749522 + (CA)n Simple_repeat Simple_repeat 2 31 0 665 333 24 4 chr11 4034038 4034290 -144749182 + MIR SINE MIR 5 261 -1 213 289 0 0 chr11 4035292 4035337 -144748135 - MER5B DNA MER1_type -8 170 126 322 235 43 43 chr11 4035353 4035468 -144748004 - L1ME1 LINE L1 -210 5956 5842 366 307 51 31 chr11 4035480 4035869 -144747603 + L1MEc LINE L1 1580 1880 -4502 329 107 0 18 chr11 4035892 4035948 -144747524 + (TTC)n Simple_repeat Simple_repeat 2 56 0 345 282 301 0 chr11 4036423 4036586 -144746886 - MIR SINE MIR -23 239 28 2317 222 58 30 chr11 4037499 4038816 -144744656 + L1M2 LINE L1 2295 3652 -3196 550 290 68 17 chr11 4039031 4039324 -144744148 + L1M2 LINE L1 3635 3942 -2906 873 199 10 10 chr11 4039324 4039520 -144743952 + L1M2 LINE L1 4451 4646 -2202 * 4001 203 19 8 chr11 4039519 4040526 -144742946 + L1M2 LINE L1 5164 6178 -743 894 184 6 17 chr11 4041271 4041445 -144742027 + FRAM SINE Alu 1 167 -9 245 387 73 0 chr11 4042149 4042286 -144741186 - MIR SINE MIR -99 163 17 25 65 0 0 chr11 4043170 4043216 -144740256 + AT_rich Low_complexity Low_complexity 1 46 0 1288 223 38 3 chr11 4043342 4043633 -144739839 - MER82 DNA MER2_type -154 499 199 1432 186 108 41 chr11 4043737 4044106 -144739366 + LTR54B LTR ERV1 1 409 -89 1711 155 55 0 chr11 4044106 4044397 -144739075 - AluSx SINE Alu -4 308 2 1432 186 108 41 chr11 4044397 4044490 -144738982 + LTR54B LTR ERV1 409 494 -4 595 253 52 26 chr11 4044921 4045075 -144738397 - MER82 DNA MER2_type -451 202 45 1071 216 132 70 chr11 4045090 4045589 -144737883 - MER61E LTR ERV1 -39 530 1 369 0 0 0 chr11 4045637 4045678 -144737794 + (TG)n Simple_repeat Simple_repeat 2 42 0 1841 258 36 37 chr11 4045716 4046517 -144736955 - L1MA8 LINE L1 0 6355 8 279 150 17 0 chr11 4046795 4046855 -144736617 - LTR54B LTR ERV1 -13 485 425 343 247 12 12 chr11 4047365 4047446 -144736026 - MIR SINE MIR -110 152 72 187 323 31 15 chr11 4047486 4047551 -144735921 - MIR SINE MIR -196 66 1 228 35 0 0 chr11 4048172 4048201 -144735271 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2302 72 0 0 chr11 4048203 4048493 -144734979 - AluY SINE Alu -21 290 1 21 0 0 0 chr11 4048998 4049019 -144734453 + AT_rich Low_complexity Low_complexity 1 21 0 2439 149 4 30 chr11 4049577 4050039 -144733433 + L1MA4 LINE L1 5844 6293 -7 21 0 0 0 chr11 4052497 4052518 -144730954 + AT_rich Low_complexity Low_complexity 1 21 0 2030 109 0 3 chr11 4053193 4053512 -144729960 - AluSx SINE Alu 0 318 1 277 343 0 0 chr11 4054495 4054597 -144728875 - MLT1L LTR MaLR -372 243 142 2207 105 3 0 chr11 4054808 4055114 -144728358 + AluSp SINE Alu 1 307 -6 42 82 0 0 chr11 4055416 4055514 -144727958 + AT_rich Low_complexity Low_complexity 1 98 0 393 197 13 0 chr11 4055534 4055610 -144727862 + Charlie3 DNA MER1_type 1 77 -2633 23 0 0 0 chr11 4056440 4056463 -144727009 + AT_rich Low_complexity Low_complexity 1 23 0 495 301 31 35 chr11 4057010 4057190 -144726282 - L1ME LINE L1 -362 5800 5620 1915 152 27 24 chr11 4057190 4057564 -144725908 + THE1C LTR MaLR 1 375 0 495 301 31 35 chr11 4057564 4057612 -144725860 - L1ME LINE L1 -542 5620 5573 381 268 70 23 chr11 4057615 4057856 -144725616 - L1ME LINE L1 -649 5517 5268 209 60 100 0 chr11 4057886 4057936 -144725536 + (TA)n Simple_repeat Simple_repeat 1 55 0 1021 103 0 0 chr11 4058185 4058321 -144725151 - AluSc SINE Alu -13 296 161 285 286 0 0 chr11 4060160 4060244 -144723228 - L1MC4 LINE L1 -1344 6698 6615 * 290 215 51 0 chr11 4060169 4060248 -144723224 + L1MC4 LINE L1 6614 6696 -1346 21 0 0 0 chr11 4060353 4060374 -144723098 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr11 4060529 4060559 -144722913 + AT_rich Low_complexity Low_complexity 1 30 0 8054 68 0 8 chr11 4261238 4262370 -144521102 + L1P LINE L1 978 2100 -4046 22 0 0 0 chr11 4262470 4262492 -144520980 + GC_rich Low_complexity Low_complexity 1 22 0 649 222 8 0 chr11 4264010 4264136 -144519336 - Tigger1 DNA MER2_type -2290 128 2 2028 188 91 99 chr11 4264209 4264933 -144518539 + LTR8A LTR ERV1 1 718 -9 346 314 0 8 chr11 4265662 4265783 -144517689 + MER94 DNA DNA 15 134 0 23 0 0 0 chr11 4268915 4268938 -144514534 + AT_rich Low_complexity Low_complexity 1 23 0 34340 38 3 3 chr11 4269066 4274313 -144509159 + L1PA4 LINE L1 912 6153 -2 315 0 0 0 chr11 4276402 4276437 -144507035 + (CA)n Simple_repeat Simple_repeat 1 35 0 245 200 17 0 chr11 4276592 4276652 -144506820 + (CA)n Simple_repeat Simple_repeat 2 62 0 219 250 0 44 chr11 4277292 4277360 -144506112 + L2 LINE L2 3249 3313 0 24 67 0 0 chr11 4277639 4277684 -144505788 + AT_rich Low_complexity Low_complexity 1 45 0 201 357 133 0 chr11 4278516 4278614 -144504858 + L2 LINE L2 3156 3266 -6 1834 110 0 19 chr11 4279110 4279374 -144504098 + AluSq SINE Alu 14 272 -41 349 222 37 0 chr11 4279377 4279512 -144503960 + GA-rich Low_complexity Low_complexity 2 141 0 3870 96 7 4 chr11 4279994 4280544 -144502928 - MER41A LTR ERV1 -2 552 1 655 332 22 0 chr11 4281018 4281241 -144502231 + MIR SINE MIR 35 262 0 192 77 0 0 chr11 4281935 4281961 -144501511 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 24 0 0 0 chr11 4282339 4282363 -144501109 + AT_rich Low_complexity Low_complexity 1 24 0 216 143 0 0 chr11 4283284 4283326 -144500146 + (TTTC)n Simple_repeat Simple_repeat 4 45 0 285 338 152 22 chr11 4283407 4283676 -144499796 - L2 LINE L2 -18 3295 2992 3531 174 52 57 chr11 4284436 4285567 -144497905 - L1MA9 LINE L1 -73 6239 5109 1991 206 30 4 chr11 4285578 4286038 -144497434 + L1MA9 LINE L1 4628 5099 -1047 7592 76 0 6 chr11 4286116 4287164 -144496308 + L1PA3 LINE L1 8 1049 -5097 22977 40 2 0 chr11 4287265 4290946 -144492526 + L1PA3 LINE L1 2493 6182 0 310 321 126 14 chr11 4290995 4291272 -144492200 - L1MCa LINE L1 -4915 1511 1204 495 229 61 79 chr11 4291276 4291490 -144491982 + MSTB1 LTR MaLR 212 421 -11 237 128 0 0 chr11 4292576 4292623 -144490849 + (TC)n Simple_repeat Simple_repeat 1 47 0 722 258 19 0 chr11 4295619 4295774 -144487698 - FRAM SINE Alu -9 167 10 206 264 92 35 chr11 4295785 4295872 -144487600 + MIR3 SINE MIR 113 204 -4 196 223 11 11 chr11 4297156 4297250 -144486222 + (TA)n Simple_repeat Simple_repeat 1 94 0 380 256 30 6 chr11 4297264 4297432 -144486040 + (TA)n Simple_repeat Simple_repeat 1 172 0 234 411 61 17 chr11 4297488 4297668 -144485804 - L2 LINE L2 -188 3084 2897 298 373 128 33 chr11 4298001 4298912 -144484560 - L2 LINE L2 -534 2780 1783 731 323 86 10 chr11 4298919 4299375 -144484097 + L2 LINE L2 2685 3185 -128 554 68 0 0 chr11 4299410 4299483 -144483989 - MADE1 DNA Mariner -7 73 1 25 31 0 0 chr11 4299604 4299636 -144483836 + AT_rich Low_complexity Low_complexity 1 32 0 307 385 24 61 chr11 4299699 4299946 -144483526 - L2 LINE L2 -82 3190 2953 213 382 55 30 chr11 4300214 4300413 -144483059 - L2 LINE L2 -690 2624 2421 255 337 61 32 chr11 4300430 4300676 -144482796 - L2 LINE L2 -1034 2280 2028 262 335 101 59 chr11 4302695 4302982 -144480490 + L2 LINE L2 3012 3310 -3 531 157 22 0 chr11 4303193 4303282 -144480190 + AluJ/FLAM SINE Alu 1 91 -221 1428 199 32 0 chr11 4303283 4303534 -144479938 + AluJo SINE Alu 50 308 -4 2534 59 0 0 chr11 4304078 4304382 -144479090 + AluY SINE Alu 1 304 -7 374 319 59 0 chr11 4304384 4304553 -144478919 + L1ME LINE L1 5485 5663 -458 186 287 202 0 chr11 4304565 4304659 -144478813 + L2 LINE L2 3192 3304 -9 217 224 0 0 chr11 4305032 4305081 -144478391 + (ATG)n Simple_repeat Simple_repeat 3 51 0 462 256 103 39 chr11 4305134 4305337 -144478135 - MIR SINE MIR -44 218 3 240 191 63 0 chr11 4305520 4305583 -144477889 - L1MC1 LINE L1 -1 6332 6266 600 226 40 22 chr11 4305607 4305788 -144477684 - MIR SINE MIR -14 248 63 213 308 0 0 chr11 4306073 4306125 -144477347 + L2 LINE L2 2914 2965 -307 184 353 0 0 chr11 4307168 4307219 -144476253 - MIR SINE MIR -131 131 81 338 325 113 0 chr11 4307432 4307583 -144475889 - MIR SINE MIR -93 169 2 10649 34 9 1 chr11 4307607 4309658 -144473814 + L1PA4 LINE L1 4079 6148 -7 2135 139 35 16 chr11 4310021 4310389 -144473083 + THE1C LTR MaLR 1 375 0 186 346 79 10 chr11 4310847 4310948 -144472524 - MIR SINE MIR -72 190 83 180 200 0 0 chr11 4311211 4311256 -144472216 + A-rich Low_complexity Low_complexity 1 45 0 366 333 18 9 chr11 4312029 4312140 -144471332 + L2 LINE L2 2981 3092 -180 513 230 11 11 chr11 4313348 4313522 -144469950 + CT-rich Low_complexity Low_complexity 1 174 0 1636 195 30 10 chr11 4313558 4313861 -144469611 - AluJb SINE Alu 0 312 4 3069 83 106 176 chr11 4315667 4316592 -144466880 + LTR12 LTR ERV1 1 2428 -10 363 332 93 10 chr11 4316730 4316923 -144466549 - MIR SINE MIR -48 214 6 361 248 28 28 chr11 4316964 4317073 -144466399 - L2 LINE L2 -6 3307 3199 358 357 41 26 chr11 4318430 4318699 -144464773 + L1M4 LINE L1 2466 2738 -3408 299 263 18 9 chr11 4318699 4318813 -144464659 + L1ME3A LINE L1 6049 6163 -7 312 322 59 59 chr11 4318865 4319104 -144464368 - HAL1 LINE L1 -2151 356 118 463 125 0 23 chr11 4319879 4319967 -144463505 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 1523 247 146 0 chr11 4320061 4320576 -144462896 + MER90 LTR ERV1 3 592 -22 349 286 79 62 chr11 4320910 4321151 -144462321 + L1ME LINE L1 1075 1319 -5097 563 290 106 24 chr11 4321159 4321761 -144461711 + L1ME LINE L1 1152 2013 -4594 514 186 21 0 chr11 4322010 4322107 -144461365 + Tigger3b DNA MER2_type 1 99 -1132 * 5153 145 42 4 chr11 4322079 4323035 -144460437 + Tigger3b DNA MER2_type 240 1231 0 1419 227 36 74 chr11 4323117 4323642 -144459830 + MLT1D LTR MaLR 1 505 0 41609 40 7 0 chr11 4323854 4330012 -144453460 + L1PA3 LINE L1 3 6198 0 3077 90 2 0 chr11 4330020 4330441 -144453031 + L1PA7 LINE L1 5733 6154 0 1423 210 49 9 chr11 4330927 4331255 -144452217 - MER2 DNA MER2_type 0 344 4 317 335 62 11 chr11 4331261 4331440 -144452032 + MIR SINE MIR 53 240 -22 23 54 0 0 chr11 4332079 4332116 -144451356 + AT_rich Low_complexity Low_complexity 1 37 0 225 267 40 13 chr11 4332959 4333034 -144450438 + MIR SINE MIR 175 251 -11 264 337 192 4 chr11 4333235 4333490 -144449982 - L2 LINE L2 -1210 2104 1802 2502 146 9 16 chr11 4335759 4335891 -144447581 - MER61B LTR ERV1 0 425 294 287 25 25 0 chr11 4335891 4335931 -144447541 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 2502 146 9 16 chr11 4335931 4336222 -144447250 - MER61B LTR ERV1 -131 294 5 2196 66 7 10 chr11 4336249 4336550 -144446922 + AluY SINE Alu 1 300 -11 3619 206 36 33 chr11 4337493 4338178 -144445294 + L1MC3 LINE L1 5726 6416 -1369 2953 203 122 6 chr11 4338178 4338883 -144444589 + LTR48 LTR ERV1 1 787 0 3619 206 36 33 chr11 4338883 4339176 -144444296 + L1MC3 LINE L1 6416 6707 -1078 743 243 57 29 chr11 4339379 4339761 -144443711 + Charlie2 DNA MER1_type 2413 2805 -57 991 167 69 0 chr11 4339761 4339965 -144443507 - Tigger1 DNA MER2_type -1 2417 2200 2156 150 26 3 chr11 4340076 4340463 -144443009 - L1MA4A LINE L1 -6 6297 5902 306 267 35 69 chr11 4340486 4340602 -144442870 + MIR SINE MIR 1 112 -150 243 272 37 0 chr11 4340794 4340875 -144442597 + MIR SINE MIR 119 202 -60 239 133 22 0 chr11 4341474 4341519 -144441953 + (TATAA)n Simple_repeat Simple_repeat 5 50 0 22 35 0 0 chr11 4341520 4341549 -144441923 + AT_rich Low_complexity Low_complexity 1 29 0 1330 169 13 30 chr11 4341804 4342041 -144441431 + AluJo SINE Alu 71 303 -9 763 198 93 0 chr11 4342235 4342397 -144441075 + MER5B DNA MER1_type 1 177 -1 270 288 99 11 chr11 4342968 4343059 -144440413 - MIR SINE MIR -102 106 20 347 327 101 12 chr11 4343322 4343490 -144439982 - L3 LINE CR1 -48 1529 1347 359 294 24 76 chr11 4343571 4343782 -144439690 + L2 LINE L2 3114 3313 0 201 403 57 8 chr11 4344092 4344216 -144439256 + L2 LINE L2 3141 3270 -2 240 379 148 6 chr11 4344220 4344389 -144439083 + L3 LINE CR1 1046 1238 -339 370 291 191 24 chr11 4344421 4344631 -144438841 + L3 LINE CR1 1331 1575 -2 198 284 222 37 chr11 4345702 4345864 -144437608 + MIR SINE MIR 1 192 -70 255 103 0 0 chr11 4347269 4347308 -144436164 + (TC)n Simple_repeat Simple_repeat 2 40 0 652 333 6 6 chr11 4347712 4347895 -144435577 - MER5A DNA MER1_type -5 184 2 368 314 9 0 chr11 4348036 4348141 -144435331 - MER5A DNA MER1_type -83 106 1 302 320 66 40 chr11 4350750 4351022 -144432450 + L2 LINE L2 1819 2097 -1217 2805 44 3 0 chr11 4353937 4354279 -144429193 + L1PA5 LINE L1 5804 6146 -8 239 215 38 0 chr11 4354365 4354444 -144429028 + L1MC4 LINE L1 7960 8041 -1 189 359 26 13 chr11 4354751 4354829 -144428643 - L2 LINE L2 -87 3185 3107 479 272 92 29 chr11 4355315 4355562 -144427910 + LTR33A LTR ERVL 161 462 -61 892 281 141 23 chr11 4355576 4356256 -144427216 + LTR50 LTR ERVL 1 791 -4 214 335 53 21 chr11 4357527 4357649 -144425823 + MIR3 SINE MIR 14 138 -103 2130 127 0 0 chr11 4358129 4358420 -144425052 + AluSx SINE Alu 3 293 -19 184 346 103 9 chr11 4358454 4358561 -144424911 - MIR3 SINE MIR -87 121 5 938 50 0 0 chr11 4358800 4358920 -144424552 - L1PA8A LINE L1 -187 5944 5825 373 74 0 0 chr11 4358920 4358970 -144424502 + L1PA8 LINE L1 6117 6170 -2 236 296 54 18 chr11 4359041 4359152 -144424320 + MIR SINE MIR 106 256 -6 2367 63 6 31 chr11 4360243 4360562 -144422910 + AluY SINE Alu 1 311 0 215 324 43 2 chr11 4362746 4362932 -144420540 - MIR SINE MIR -1 261 24 510 181 0 0 chr11 4363552 4363657 -144419815 + GA-rich Low_complexity Low_complexity 2 106 0 729 136 42 8 chr11 4364554 4364672 -144418800 - L1PA15 LINE L1 0 6165 6044 2004 168 23 15 chr11 4364678 4365037 -144418435 + MSTA LTR MaLR 19 355 0 7742 199 20 7 chr11 4365037 4367432 -144416040 - L1PA16 LINE L1 -118 6699 4279 5545 114 25 28 chr11 4367470 4368356 -144415116 + L1PA13 LINE L1 5280 6162 -1 565 256 63 0 chr11 4368352 4368543 -144414929 - L1PA16 LINE L1 -4817 1970 1768 * 1772 257 60 14 chr11 4368859 4369412 -144414060 - L1PA16 LINE L1 -4986 1801 1224 2002 300 43 34 chr11 4369545 4370288 -144413184 - L1PA16 LINE L1 -6037 750 1 6960 21 4 16 chr11 4372589 4373220 -144410252 - L1PA2 LINE L1 -6 6149 5529 2798 16 0 0 chr11 4373220 4373526 -144409946 + AluYa5 SINE Alu 1 306 -5 6960 21 4 16 chr11 4373526 4373712 -144409760 - L1PA2 LINE L1 -626 5529 5342 6122 29 7 0 chr11 4373710 4374440 -144409032 + L1PA2 LINE L1 4598 5332 -814 * 43344 36 24 1 chr11 4377118 4382841 -144400631 - L1PA3 LINE L1 -298 5857 1 1316 204 23 4 chr11 4383163 4383428 -144400044 - L1MA10 LINE L1 -68 6266 5997 494 309 7 20 chr11 4383510 4383662 -144399810 - MIR SINE MIR -85 177 28 303 296 191 16 chr11 4383955 4384144 -144399328 + MIR SINE MIR 41 262 0 936 28 37 0 chr11 4384590 4384729 -144398743 + L1PA2 LINE L1 6030 6172 0 252 221 15 15 chr11 4384746 4384814 -144398658 + A-rich Low_complexity Low_complexity 5 72 0 319 256 163 47 chr11 4385813 4385942 -144397530 - MIR SINE MIR -59 203 60 1236 245 96 22 chr11 4386713 4386988 -144396484 + L2 LINE L2 2752 3005 -308 2069 160 28 50 chr11 4386988 4387387 -144396085 + MLT1B LTR MaLR 1 390 0 1236 245 96 22 chr11 4387387 4387622 -144395850 + L2 LINE L2 3005 3302 -11 281 384 16 0 chr11 4388267 4388392 -144395080 + MIR3 SINE MIR 11 137 -71 223 295 54 36 chr11 4388536 4388648 -144394824 - MIR SINE MIR -83 179 66 300 288 27 63 chr11 4388682 4388793 -144394679 - MIR SINE MIR -81 127 21 759 246 121 0 chr11 4391246 4391461 -144392011 + MIR SINE MIR 10 250 -12 22 0 0 0 chr11 4392090 4392112 -144391360 + AT_rich Low_complexity Low_complexity 1 22 0 244 158 26 0 chr11 4392358 4392396 -144391076 + L2 LINE L2 3213 3251 -21 21 36 0 0 chr11 4393615 4393643 -144389829 + AT_rich Low_complexity Low_complexity 1 28 0 1902 136 8 0 chr11 4393858 4394122 -144389350 - AluSq SINE Alu -47 266 1 210 308 0 96 chr11 4394249 4394353 -144389119 + MIR3 SINE MIR 10 103 -105 435 289 123 24 chr11 4395795 4396006 -144387466 + MIR SINE MIR 28 259 -3 708 281 0 6 chr11 4396188 4396359 -144387113 + L1M3c LINE L1 1357 1526 -5970 * 1821 234 79 24 chr11 4396354 4397116 -144386356 + L1M3c LINE L1 2943 3752 -3813 2029 194 29 22 chr11 4397125 4397538 -144385934 - MER88 LTR ERVL -2 462 47 207 0 0 0 chr11 4398230 4398253 -144385219 + (A)n Simple_repeat Simple_repeat 1 23 0 1426 92 67 0 chr11 4398416 4398611 -144384861 + AluSg/x SINE Alu 87 294 -18 1162 203 14 5 chr11 4398912 4399134 -144384338 + HERVL74 LTR ERVL 1869 2092 -3593 4558 206 11 38 chr11 4399137 4400083 -144383389 + HERVL74 LTR ERVL 2421 3340 -2345 983 177 0 12 chr11 4400065 4400229 -144383243 + HERVL74 LTR ERVL 3479 3640 -2045 * 548 324 131 35 chr11 4400533 4401043 -144382429 + L2 LINE L2 2133 2691 -623 584 254 97 91 chr11 4401612 4402132 -144381340 + MER65B LTR ERV1 1 445 0 312 346 40 25 chr11 4402615 4402817 -144380655 + L2 LINE L2 2751 2955 -359 1862 52 9 4 chr11 4402958 4403188 -144380284 - L1PA6 LINE L1 -7 6147 5917 513 309 85 50 chr11 4403188 4403719 -144379753 + L2 LINE L2 2465 3094 -219 671 266 34 34 chr11 4403789 4403996 -144379476 + MIR SINE MIR 20 226 -36 368 341 24 8 chr11 4404032 4404155 -144379317 + L2 LINE L2 3139 3263 -9 273 255 108 0 chr11 4404172 4404274 -144379198 + L1ME4a LINE L1 5840 5952 -169 706 284 87 18 chr11 4405053 4405282 -144378190 + MIR SINE MIR 13 257 -5 2453 103 39 25 chr11 4406669 4407028 -144376444 - THE1B LTR MaLR 0 364 1 275 360 55 55 chr11 4407597 4407978 -144375494 + L2 LINE L2 2910 3290 -23 2122 286 143 52 chr11 4411464 4412610 -144370862 - L2 LINE L2 -767 2547 1507 3534 77 41 0 chr11 4412610 4413052 -144370420 - LTR46 LTR ERV1 0 460 1 2122 286 143 52 chr11 4413052 4413076 -144370396 - L2 LINE L2 -1807 1507 1487 845 227 32 16 chr11 4413076 4413261 -144370211 + MER5A DNA MER1_type 2 189 0 2122 286 143 52 chr11 4413261 4413423 -144370049 - L2 LINE L2 -1827 1487 1092 587 351 108 6 chr11 4413467 4413820 -144369652 - L2 LINE L2 -2810 504 116 402 235 73 29 chr11 4414020 4414156 -144369316 + L2 LINE L2 2507 2648 -666 511 246 81 0 chr11 4420134 4420273 -144363199 - MIR SINE MIR -49 213 63 357 257 140 29 chr11 4420989 4421160 -144362312 - MIR SINE MIR -44 218 29 2151 130 0 3 chr11 4421989 4422289 -144361183 + AluSx SINE Alu 1 299 -13 198 0 0 0 chr11 4422723 4422745 -144360727 + (TA)n Simple_repeat Simple_repeat 2 23 0 2266 127 0 0 chr11 4422745 4423052 -144360420 - AluSx SINE Alu -5 307 1 329 294 29 52 chr11 4424391 4424527 -144358945 - MIR SINE MIR -109 153 21 577 233 109 57 chr11 4424725 4424885 -144358587 + MIR SINE MIR 25 198 -64 560 14 14 0 chr11 4424885 4424954 -144358518 + (TAGA)n Simple_repeat Simple_repeat 3 72 0 577 233 109 57 chr11 4424954 4424986 -144358486 + MIR SINE MIR 198 227 -35 475 344 54 13 chr11 4429086 4429310 -144354162 - MIR SINE MIR -10 252 20 1366 77 33 0 chr11 4429826 4430008 -144353464 + L1PA13 LINE L1 5975 6162 -1 2353 87 0 22 chr11 4430486 4430797 -144352675 + AluSg SINE Alu 1 304 -6 193 308 0 15 chr11 4431616 4431681 -144351791 - MIR3 SINE MIR -139 69 6 3586 80 14 12 chr11 4431708 4432193 -144351279 - LTR15 LTR ERV1 -7 486 1 858 249 12 70 chr11 4432858 4433115 -144350357 + MIR SINE MIR 21 262 0 2190 128 3 0 chr11 4433209 4433513 -144349959 - AluSx SINE Alu -7 305 1 228 322 96 17 chr11 4434700 4434815 -144348657 + MIR SINE MIR 90 213 -49 27 29 0 0 chr11 4436160 4436194 -144347278 + AT_rich Low_complexity Low_complexity 1 34 0 2253 119 3 0 chr11 4436351 4436662 -144346810 + AluSx SINE Alu 1 312 0 28 0 0 0 chr11 4436777 4436805 -144346667 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr11 4436924 4436956 -144346516 + AT_rich Low_complexity Low_complexity 1 32 0 8866 221 23 13 chr11 4437330 4438288 -144345184 - L1P4 LINE L1 -735 5431 4485 2382 76 0 22 chr11 4438288 4438603 -144344869 - AluY SINE Alu -3 308 1 8866 221 23 13 chr11 4438603 4438656 -144344816 - L1P4 LINE L1 -1681 4485 4434 324 70 0 0 chr11 4438656 4438699 -144344773 + (TG)n Simple_repeat Simple_repeat 1 43 0 8866 221 23 13 chr11 4438699 4439915 -144343557 - L1P4 LINE L1 -1732 4434 3178 1950 68 0 4 chr11 4439985 4440220 -144343252 + AluY SINE Alu 67 300 -11 1281 179 74 21 chr11 4440849 4441134 -144342338 - L1 LINE L1 -2147 3999 3700 * 2868 185 12 0 chr11 4441129 4441691 -144341781 + L1 LINE L1 3985 4553 -1593 612 149 0 0 chr11 4441693 4441787 -144341685 + L1PB4 LINE L1 6063 6156 0 1863 168 35 23 chr11 4442315 4442709 -144340763 + L1MA7 LINE L1 5889 6287 -4 388 272 24 16 chr11 4442852 4442977 -144340495 + MIR SINE MIR 20 145 -63 345 257 40 20 chr11 4442995 4443147 -144340325 + L2 LINE L2 2804 2958 -314 28 29 0 0 chr11 4443188 4443223 -144340249 + AT_rich Low_complexity Low_complexity 1 35 0 337 264 132 35 chr11 4443232 4443376 -144340096 + L2 LINE L2 3156 3313 0 5426 78 4 13 chr11 4443378 4444083 -144339389 - L1PA13 LINE L1 0 6163 5465 300 287 25 25 chr11 4446381 4446503 -144336969 + MER94 DNA DNA 1 122 -12 253 243 36 110 chr11 4447560 4447717 -144335755 + L1MC5 LINE L1 7402 7526 -435 2398 76 0 0 chr11 4447717 4448018 -144335454 - AluSx SINE Alu -11 301 1 253 243 36 110 chr11 4448018 4448169 -144335303 + L1MC5 LINE L1 7526 7687 -274 435 278 29 107 chr11 4448197 4448416 -144335056 + MIR SINE MIR 1 195 -67 2225 96 3 7 chr11 4448416 4448707 -144334765 - AluSg SINE Alu -20 290 1 435 278 29 107 chr11 4448707 4448768 -144334704 + MIR SINE MIR 195 259 -3 275 286 206 0 chr11 4449583 4449709 -144333763 + MIR SINE MIR 47 198 -64 1446 172 0 0 chr11 4449834 4450061 -144333411 - L1PB3 LINE L1 -7 6147 5921 209 203 0 68 chr11 4450742 4450803 -144332669 + T-rich Low_complexity Low_complexity 4 61 -11 1462 195 120 0 chr11 4450803 4451111 -144332361 + MER7A DNA MER2_type 3 345 -1 209 203 0 68 chr11 4451111 4451123 -144332349 + T-rich Low_complexity Low_complexity 61 72 0 237 300 9 91 chr11 4451924 4452034 -144331438 - L2 LINE L2 0 3313 3213 315 267 182 40 chr11 4453749 4453925 -144329547 - MIR SINE MIR -4 258 58 486 270 122 0 chr11 4454430 4454578 -144328894 - MIR SINE MIR -69 193 28 274 372 78 52 chr11 4455015 4455359 -144328113 - L2 LINE L2 -1 3271 2919 247 330 57 0 chr11 4455450 4455538 -144327934 - L2 LINE L2 -44 3228 3136 25 31 0 0 chr11 4455699 4455731 -144327741 + AT_rich Low_complexity Low_complexity 1 32 0 365 300 62 31 chr11 4455785 4455945 -144327527 - MIR SINE MIR -97 165 1 207 383 12 0 chr11 4455952 4456033 -144327439 - L2 LINE L2 -285 2987 2906 198 0 0 0 chr11 4456063 4456085 -144327387 + (TGG)n Simple_repeat Simple_repeat 1 22 0 389 167 13 0 chr11 4456131 4456209 -144327263 + GA-rich Low_complexity Low_complexity 2 80 0 501 47 0 0 chr11 4456210 4456274 -144327198 + (GGAA)n Simple_repeat Simple_repeat 2 65 0 440 297 59 18 chr11 4456489 4456711 -144326761 + MIR SINE MIR 1 231 -31 322 361 12 0 chr11 4458271 4458440 -144325032 + MER5B DNA MER1_type 5 175 -3 522 317 119 39 chr11 4458685 4459205 -144324267 + L2 LINE L2 2232 2793 -521 181 242 48 48 chr11 4459461 4459523 -144323949 + MIR3 SINE MIR 3 64 -144 2275 112 0 0 chr11 4459546 4459842 -144323630 + AluSg SINE Alu 1 296 -14 212 340 128 0 chr11 4459954 4460048 -144323424 + MIR SINE MIR 48 153 -109 184 283 250 0 chr11 4461383 4461475 -144321997 - MIR SINE MIR -60 148 34 418 266 55 9 chr11 4461583 4461692 -144321780 - MER81 DNA DNA 0 114 1 248 346 40 0 chr11 4461694 4461795 -144321677 + MIR SINE MIR 38 142 -120 240 86 0 0 chr11 4462536 4462571 -144320901 + (TG)n Simple_repeat Simple_repeat 1 35 0 252 327 107 0 chr11 4462778 4462928 -144320544 - MIR SINE MIR -3 259 94 448 261 12 8 chr11 4464004 4464135 -144319337 + L2 LINE L2 2840 2976 -298 24 0 0 0 chr11 4464185 4464209 -144319263 + AT_rich Low_complexity Low_complexity 1 24 0 226 347 32 32 chr11 4464343 4464467 -144319005 + L2 LINE L2 3175 3298 -15 1280 187 129 16 chr11 4466407 4466717 -144316755 + MER7A DNA MER2_type 3 345 -1 1119 219 59 22 chr11 4467279 4467599 -144315873 - L1M4c LINE L1 -4892 1492 1161 * 2456 94 1 80 chr11 4467595 4467876 -144315596 - L1M1 LINE L1 -398 5756 5495 702 60 0 0 chr11 4467876 4467960 -144315512 - AluSg/x SINE Alu -12 297 214 2456 94 1 80 chr11 4467960 4468116 -144315356 - L1M1 LINE L1 -659 5495 5328 2923 104 0 0 chr11 4468123 4468508 -144314964 - L1P3 LINE L1 -6055 406 22 748 69 0 10 chr11 4468764 4468865 -144314607 - AluSg/x SINE Alu -1 311 212 2279 86 0 10 chr11 4469565 4469857 -144313615 + AluSc SINE Alu 1 289 -20 360 89 143 0 chr11 4470082 4470138 -144313334 - AluSg/x SINE Alu -20 280 217 193 313 83 10 chr11 4470658 4470754 -144312718 - L2 LINE L2 -18 3295 3193 284 274 167 43 chr11 4470809 4470995 -144312477 + L2 LINE L2 2151 2359 -955 2442 48 0 7 chr11 4471557 4471852 -144311620 - AluY SINE Alu -18 293 1 1120 174 24 14 chr11 4472708 4472920 -144310552 + MER20 DNA MER1_type 1 214 -5 217 178 0 44 chr11 4473629 4473674 -144309798 + C-rich Low_complexity Low_complexity 2 44 0 727 265 38 9 chr11 4474202 4474413 -144309059 + MIR SINE MIR 14 230 -32 278 264 19 55 chr11 4474976 4475066 -144308406 - MER5A DNA MER1_type 0 189 90 1132 186 115 0 chr11 4475556 4475835 -144307637 - MER33 DNA MER1_type -13 311 1 1290 235 81 40 chr11 4475902 4476332 -144307140 - L1ME1 LINE L1 -5 6161 5714 2222 75 7 0 chr11 4476478 4476801 -144306671 - AluY SINE Alu 0 325 1 276 304 0 0 chr11 4476801 4476893 -144306579 - L1M4 LINE L1 -1904 4242 4151 284 243 14 0 chr11 4476895 4476969 -144306503 - L1M4 LINE L1 -2120 4026 3952 * 792 236 12 13 chr11 4476954 4477174 -144306298 - L1M2 LINE L1 -4324 2059 1471 2136 88 3 11 chr11 4477221 4477505 -144305967 + AluSp SINE Alu 22 303 -10 209 401 6 0 chr11 4478173 4478340 -144305132 + (TGG)n Simple_repeat Simple_repeat 1 168 0 282 184 158 53 chr11 4478993 4479069 -144304403 + MER96 DNA MER1_type? 1 84 -91 296 294 76 21 chr11 4480446 4480684 -144302788 - L1ME4a LINE L1 -17 6104 5854 4609 108 75 11 chr11 4480777 4481506 -144301966 - L1PA13 LINE L1 0 6163 5388 2182 54 65 7 chr11 4481702 4481980 -144301492 + AluY SINE Alu 2 295 -16 559 221 67 36 chr11 4482472 4482667 -144300805 + LTR37A LTR ERV1 226 426 0 2787 161 13 23 chr11 4482723 4483332 -144300140 + pTR5 LTR ERV1 743 1345 -1093 3225 128 234 53 chr11 4483347 4484043 -144299429 + LTR12 LTR ERV1 5 826 0 2535 127 148 7 chr11 4484276 4484392 -144299080 - LTR45B LTR ERV1 0 489 391 2315 81 3 3 chr11 4484392 4484689 -144298783 + AluSp SINE Alu 1 297 -16 2535 127 148 7 chr11 4484689 4484999 -144298473 - LTR45B LTR ERV1 -98 391 3 950 251 64 20 chr11 4485303 4485554 -144297918 - MIR SINE MIR 0 262 1 308 300 0 47 chr11 4485591 4485660 -144297812 + GA-rich Low_complexity Low_complexity 2 73 -71 1945 175 7 0 chr11 4485660 4485968 -144297504 + AluJo SINE Alu 1 310 -2 308 300 0 47 chr11 4485968 4486048 -144297424 + GA-rich Low_complexity Low_complexity 73 144 0 1011 196 44 22 chr11 4486941 4487170 -144296302 - L1ME4a LINE L1 -347 5819 5586 1529 182 23 20 chr11 4487428 4487730 -144295742 - AluJb SINE Alu -7 305 3 1942 68 129 0 chr11 4488845 4489108 -144294364 - AluSc SINE Alu -12 297 1 1624 117 0 35 chr11 4489740 4490022 -144293450 - AluY SINE Alu -39 272 1 224 359 165 0 chr11 4490493 4490699 -144292773 + MIR SINE MIR 19 258 -4 185 258 81 16 chr11 4491603 4491665 -144291807 + MIR SINE MIR 49 114 -148 2380 87 0 0 chr11 4491795 4492093 -144291379 + AluSx SINE Alu 1 298 -14 617 319 178 9 chr11 4492321 4492478 -144290994 - L2 LINE L2 -2 3311 3182 2175 82 0 11 chr11 4492478 4492757 -144290715 + AluY SINE Alu 1 276 -35 617 319 178 9 chr11 4492757 4492947 -144290525 - L2 LINE L2 -131 3182 2905 2233 127 0 0 chr11 4492993 4493293 -144290179 + AluSx SINE Alu 3 302 -10 1842 119 37 0 chr11 4494325 4494482 -144288990 - AluSx SINE Alu -22 290 117 240 35 0 0 chr11 4494482 4494511 -144288961 + (TG)n Simple_repeat Simple_repeat 2 30 0 1842 119 37 0 chr11 4494511 4494622 -144288850 - AluSx SINE Alu -195 117 12 22 70 0 0 chr11 4495621 4495664 -144287808 + AT_rich Low_complexity Low_complexity 1 43 0 2262 117 0 0 chr11 4498049 4498356 -144285116 + AluSx SINE Alu 1 307 -5 471 279 80 40 chr11 4499010 4499236 -144284236 - LTR68 LTR ERV1 -505 235 1 440 269 119 36 chr11 4499631 4499824 -144283648 + MER63A DNA MER1_type 1 209 -1 3116 197 66 8 chr11 4500036 4500690 -144282782 - L1MB5 LINE L1 -8 6166 5475 204 89 0 54 chr11 4500690 4500746 -144282726 + (TA)n Simple_repeat Simple_repeat 2 54 0 35 63 0 0 chr11 4501155 4501218 -144282254 + AT_rich Low_complexity Low_complexity 1 63 0 196 393 60 0 chr11 4501291 4501474 -144281998 - L2 LINE L2 -928 2386 2193 245 203 31 16 chr11 4501586 4501650 -144281822 - LTR54 LTR ERV1 -47 463 399 3630 220 40 21 chr11 4503749 4504780 -144278692 + L1MB7 LINE L1 5115 6168 -16 253 123 18 18 chr11 4507727 4507784 -144275688 + GA-rich Low_complexity Low_complexity 2 58 0 234 0 0 0 chr11 4507784 4507810 -144275662 + (TG)n Simple_repeat Simple_repeat 2 27 0 190 210 0 49 chr11 4508529 4508610 -144274862 + (TATG)n Simple_repeat Simple_repeat 3 79 0 1985 113 0 15 chr11 4509005 4509279 -144274193 + AluSx SINE Alu 27 296 -16 724 201 152 0 chr11 4509540 4509704 -144273768 - MER5A DNA MER1_type 0 189 1 337 269 30 82 chr11 4509842 4509865 -144273607 - MIR SINE MIR -63 145 122 2541 40 0 3 chr11 4509865 4510163 -144273309 + AluY SINE Alu 15 311 0 337 269 30 82 chr11 4510163 4510273 -144273199 - MIR SINE MIR -86 122 19 2424 78 0 0 chr11 4510597 4510891 -144272581 - AluSx SINE Alu -18 294 1 656 28 0 0 chr11 4510892 4510963 -144272509 - AluSg/x SINE Alu -170 140 70 21 57 0 0 chr11 4512974 4513009 -144270463 + AT_rich Low_complexity Low_complexity 1 35 0 567 248 75 37 chr11 4513854 4513936 -144269536 + MIR SINE MIR 41 118 -144 1753 190 3 0 chr11 4513936 4514241 -144269231 - AluSx SINE Alu -5 307 2 567 248 75 37 chr11 4514241 4514372 -144269100 + MIR SINE MIR 118 262 0 24 32 0 0 chr11 4514611 4514642 -144268830 + AT_rich Low_complexity Low_complexity 1 31 0 3979 49 0 0 chr11 4514642 4515131 -144268341 - L1PA5 LINE L1 0 6154 5666 359 406 32 5 chr11 4515157 4515376 -144268096 + L2 LINE L2 2869 3093 -220 746 269 103 17 chr11 4515502 4515886 -144267586 + L1MC/D LINE L1 5317 5744 -625 382 233 39 39 chr11 4516029 4516158 -144267314 + MIR SINE MIR 77 205 -57 291 233 69 74 chr11 4516175 4516364 -144267108 - L1ME LINE L1 -364 5757 5570 26 74 0 0 chr11 4516537 4516591 -144266881 + AT_rich Low_complexity Low_complexity 1 54 0 22 35 0 0 chr11 4516823 4516852 -144266620 + AT_rich Low_complexity Low_complexity 1 29 0 1165 201 107 105 chr11 4517185 4517736 -144265736 - MER34B LTR ERV1 -2 563 12 1943 184 5 29 chr11 4517741 4518115 -144265357 - MLT1A1 LTR MaLR 0 365 1 2131 119 0 3 chr11 4518163 4518466 -144265006 - AluSq SINE Alu -11 302 1 823 93 0 0 chr11 4518548 4518656 -144264816 - AluSg/x SINE Alu -2 307 200 27 62 0 0 chr11 4568657 4568705 -144214767 + AT_rich Low_complexity Low_complexity 1 48 0 6953 53 9 30 chr11 4568705 4569522 -144213950 - L1PA7 LINE L1 -4 6150 5349 2213 111 7 3 chr11 4569522 4569820 -144213652 + AluSp SINE Alu 1 299 -14 6953 53 9 30 chr11 4569820 4570182 -144213290 - L1PA7 LINE L1 -805 5349 4981 947 241 38 70 chr11 4571119 4571630 -144211842 - PABL_B LTR ERV1 -21 646 10 3052 232 34 53 chr11 4571842 4572864 -144210608 + L1MB5 LINE L1 3156 4157 -1989 1362 124 16 31 chr11 4572864 4573121 -144210351 + L1MA3 LINE L1 6050 6302 -3 3052 232 34 53 chr11 4573121 4573198 -144210274 + L1MB5 LINE L1 4157 4234 -1912 2345 107 0 0 chr11 4573247 4573556 -144209916 - AluY SINE Alu -2 309 1 1806 213 45 28 chr11 4574015 4574523 -144208949 - L1PB4 LINE L1 -95 6061 5545 23 33 0 0 chr11 4575308 4575338 -144208134 + AT_rich Low_complexity Low_complexity 1 30 0 267 191 52 26 chr11 4577129 4577244 -144206228 + (TATAA)n Simple_repeat Simple_repeat 3 120 0 22 56 0 0 chr11 4577511 4577547 -144205925 + AT_rich Low_complexity Low_complexity 1 36 0 286 317 24 43 chr11 4578103 4578267 -144205205 + L2 LINE L2 1873 2033 -1281 278 276 0 13 chr11 4578310 4578386 -144205086 + L2 LINE L2 2164 2238 -1076 3313 234 23 26 chr11 4578813 4579810 -144203662 + L1MB5 LINE L1 4308 5301 -845 293 256 95 31 chr11 4579893 4580131 -144203341 + L1MC/D LINE L1 5525 5793 -377 1206 269 25 47 chr11 4580172 4580485 -144202987 + L1M4 LINE L1 2521 2839 -3307 220 20 59 39 chr11 4580485 4580536 -144202936 + (TA)n Simple_repeat Simple_repeat 1 52 0 1206 269 25 47 chr11 4580536 4580650 -144202822 + L1M4 LINE L1 2839 2954 -3192 1872 127 13 43 chr11 4580650 4580949 -144202523 + AluSx SINE Alu 2 291 -21 1206 269 25 47 chr11 4580949 4581249 -144202223 + L1M4 LINE L1 2954 3233 -2913 466 336 34 10 chr11 4581335 4581543 -144201929 + MIR SINE MIR 50 262 0 189 0 0 0 chr11 4582106 4582127 -144201345 + (A)n Simple_repeat Simple_repeat 1 21 0 613 174 16 5 chr11 4583787 4583973 -144199499 + L1MA4 LINE L1 6033 6297 -3 24 32 0 0 chr11 4584027 4584058 -144199414 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr11 4584408 4584436 -144199036 + AT_rich Low_complexity Low_complexity 1 28 0 2139 104 3 7 chr11 4584550 4584839 -144198633 - AluSc SINE Alu -21 288 1 192 187 165 44 chr11 4584937 4585028 -144198444 - L2 LINE L2 -4 3309 3208 21 0 0 0 chr11 4585281 4585302 -144198170 + AT_rich Low_complexity Low_complexity 1 21 0 203 321 71 9 chr11 4586097 4586209 -144197263 + MIR SINE MIR 137 255 -7 297 243 14 0 chr11 4587540 4587614 -144195858 - L1M4 LINE L1 -1983 4399 4325 * 308 229 16 16 chr11 4587612 4587734 -144195738 - L1M4 LINE L1 -3951 2433 2312 890 217 46 132 chr11 4587739 4588216 -144195256 + L1MB5 LINE L1 5326 5753 -431 2362 172 36 5 chr11 4588216 4588659 -144194813 - MSTB2 LTR MaLR 0 457 1 890 217 46 132 chr11 4588659 4588721 -144194751 + L1MB5 LINE L1 5753 5819 -365 558 220 16 44 chr11 4588955 4589137 -144194335 + L1MB5 LINE L1 5815 5991 -183 2403 82 7 0 chr11 4589315 4589620 -144193852 + AluSp SINE Alu 1 307 -6 2178 104 17 0 chr11 4589948 4590245 -144193227 + AluSq SINE Alu 1 302 -11 1105 176 13 63 chr11 4590387 4590626 -144192846 - AluJo SINE Alu 0 312 86 1931 129 26 26 chr11 4591197 4591507 -144191965 + AluSg SINE Alu 1 310 0 180 0 0 0 chr11 4592276 4592296 -144191176 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 296 282 46 8 chr11 4592356 4592497 -144190975 - MIR SINE MIR -64 144 13 21 0 0 0 chr11 4592588 4592609 -144190863 + AT_rich Low_complexity Low_complexity 1 21 0 255 352 37 0 chr11 4594355 4594463 -144189009 + MIR SINE MIR 18 129 -133 2354 103 3 0 chr11 4594464 4594776 -144188696 - AluSq SINE Alu 0 313 1 1548 111 0 8 chr11 4594823 4595067 -144188405 + L1MA6 LINE L1 6059 6300 0 28 29 0 0 chr11 4595407 4595442 -144188030 + AT_rich Low_complexity Low_complexity 1 35 0 1715 155 22 4 chr11 4595535 4595848 -144187624 - AluJb SINE Alu 0 318 1 381 22 0 0 chr11 4597608 4597654 -144185818 + (T)n Simple_repeat Simple_repeat 1 46 0 34 24 0 0 chr11 4597658 4597699 -144185773 + GC_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr11 4597933 4597954 -144185518 + AT_rich Low_complexity Low_complexity 1 21 0 865 180 15 34 chr11 4598083 4598289 -144185183 + L1MB3 LINE L1 5918 6119 -64 2315 66 3 0 chr11 4598734 4599023 -144184449 - AluY SINE Alu -21 290 1 822 295 102 24 chr11 4599264 4599509 -144183963 + L1ME LINE L1 48 273 -5797 2325 89 0 0 chr11 4599509 4599802 -144183670 + AluSg SINE Alu 1 293 -17 822 295 102 24 chr11 4599802 4600058 -144183414 + L1ME LINE L1 273 588 -5482 1081 159 15 5 chr11 4600431 4600626 -144182846 - LTR1 LTR ERV1 0 785 589 2542 124 90 5 chr11 4600626 4601071 -144182401 - L1PA8 LINE L1 -4 6168 5686 359 245 14 35 chr11 4601101 4601244 -144182228 + L1ME LINE L1 49 188 -5882 2353 181 66 34 chr11 4601246 4601803 -144181669 - LTR1 LTR ERV1 -203 582 8 2246 102 3 16 chr11 4603346 4603660 -144179812 - AluSx SINE Alu 0 312 3 502 271 82 47 chr11 4603707 4604132 -144179340 - L1M4 LINE L1 -2042 4104 3665 1347 186 42 0 chr11 4604643 4604950 -144178522 + MER33 DNA MER1_type 5 324 0 2065 206 93 8 chr11 4606814 4607479 -144175993 - L1M4 LINE L1 -3108 3038 2317 2301 95 3 13 chr11 4607487 4607802 -144175670 - AluSx SINE Alu 0 312 1 2477 25 0 59 chr11 4607837 4608160 -144175312 - AluY SINE Alu -7 304 1 379 152 3 2 chr11 4608175 4608244 -144175228 + AluSp/q SINE Alu 236 296 -7 24 0 0 0 chr11 4608337 4608361 -144175111 + AT_rich Low_complexity Low_complexity 1 24 0 2214 110 10 0 chr11 4608647 4608946 -144174526 - AluSq SINE Alu -11 302 1 24 0 0 0 chr11 4608946 4608970 -144174502 + AT_rich Low_complexity Low_complexity 1 24 0 566 330 13 51 chr11 4609344 4609396 -144174076 - MIR SINE MIR -23 239 187 2314 96 0 3 chr11 4609396 4609699 -144173773 - AluSq SINE Alu -11 302 1 566 330 13 51 chr11 4609699 4609882 -144173590 - MIR SINE MIR -75 187 13 658 254 30 6 chr11 4609914 4610079 -144173393 + MER58A DNA MER1_type 24 192 -32 1689 74 0 0 chr11 4610079 4610304 -144173168 + AluSg/x SINE Alu 83 307 0 969 237 47 122 chr11 4610959 4611264 -144172208 - L1MCa LINE L1 -5571 651 325 2361 85 16 0 chr11 4611264 4611571 -144171901 - AluSx SINE Alu 0 312 1 969 237 47 122 chr11 4611571 4611739 -144171733 - L1MCa LINE L1 -5897 325 140 2149 87 0 75 chr11 4611739 4612072 -144171400 - AluSg SINE Alu -2 308 1 969 237 47 122 chr11 4612072 4612164 -144171308 - L1MCa LINE L1 -6082 140 43 621 131 0 10 chr11 4613185 4613284 -144170188 + MER4A LTR ERV1 1 98 -566 1597 150 12 22 chr11 4613284 4613631 -144169841 + MER4A LTR ERV1 261 662 -2 1156 126 26 21 chr11 4613718 4613735 -144169737 + AluSp SINE Alu 120 135 -178 2322 100 0 0 chr11 4613735 4614044 -144169428 + AluY SINE Alu 1 309 -2 1156 126 26 21 chr11 4614044 4614217 -144169255 + AluSp SINE Alu 135 311 -2 1396 110 71 21 chr11 4614344 4614669 -144168803 - MER4A LTR ERV1 0 651 252 682 117 8 16 chr11 4614691 4614819 -144168653 - MER4A LTR ERV1 -537 127 1 393 69 0 235 chr11 4614874 4614927 -144168545 + MADE1 DNA Mariner 1 20 -60 2303 84 0 43 chr11 4614927 4615250 -144168222 - AluSg SINE Alu -1 309 1 289 117 14 0 chr11 4615250 4615300 -144168172 + MADE1 DNA Mariner 37 80 0 393 69 0 235 chr11 4615250 4615298 -144168174 + MADE1 DNA Mariner 20 78 -2 220 292 0 0 chr11 4615750 4615798 -144167674 + MER5B DNA MER1_type 2 49 -129 235 263 0 0 chr11 4615800 4615813 -144167659 - L1MA10 LINE L1 -2 6332 6320 443 254 124 6 chr11 4615813 4615990 -144167482 - L1ME1 LINE L1 -6 6160 5963 1017 190 46 32 chr11 4616165 4616381 -144167091 - MER20 DNA MER1_type 0 219 1 195 42 0 0 chr11 4616947 4616971 -144166501 + (TC)n Simple_repeat Simple_repeat 1 24 0 351 259 86 91 chr11 4618119 4618170 -144165302 - L2 LINE L2 -412 2902 2852 2110 121 0 7 chr11 4618170 4618468 -144165004 + AluSq SINE Alu 3 298 -15 351 259 86 91 chr11 4618468 4618670 -144164802 - L2 LINE L2 -462 2852 2649 2180 93 7 14 chr11 4618670 4618960 -144164512 + AluSq SINE Alu 5 292 -21 351 259 86 91 chr11 4618960 4619056 -144164416 - L2 LINE L2 -665 2649 2554 1635 225 29 44 chr11 4620256 4620565 -144162907 - MLT1C LTR MaLR 0 467 164 2386 98 0 0 chr11 4620565 4620862 -144162610 + AluSx SINE Alu 1 297 -15 1635 225 29 44 chr11 4620862 4620961 -144162511 - MLT1C LTR MaLR -303 164 65 2427 62 3 0 chr11 4621272 4621576 -144161896 - AluY SINE Alu -6 305 1 373 337 143 10 chr11 4623367 4623667 -144159805 - L2 LINE L2 -50 3263 2924 718 130 35 0 chr11 4624294 4624409 -144159063 - AluSg1 SINE Alu -189 120 2 494 62 0 16 chr11 4624437 4624501 -144158971 - LTR7 LTR ERV1 -42 408 346 351 0 0 0 chr11 4625722 4625764 -144157708 + (CA)n Simple_repeat Simple_repeat 1 81 0 351 0 0 0 chr11 4625764 4625803 -144157669 + (CA)n Simple_repeat Simple_repeat 2 40 0 2328 80 3 7 chr11 4626526 4626827 -144156645 - AluY SINE Alu -11 300 1 1581 223 41 8 chr11 4627110 4627478 -144155994 + L1MB7 LINE L1 5447 5826 -358 7723 24 0 76 chr11 4627582 4629242 -144154230 + L1PA3 LINE L1 4573 6155 0 1858 216 31 52 chr11 4629336 4629879 -144153593 - L1MA9 LINE L1 -30 6282 5751 39 22 0 0 chr11 4630654 4630700 -144152772 + AT_rich Low_complexity Low_complexity 1 46 0 207 114 0 0 chr11 4632337 4632372 -144151100 + (TG)n Simple_repeat Simple_repeat 2 36 0 22 0 0 0 chr11 4632622 4632644 -144150828 + AT_rich Low_complexity Low_complexity 1 22 0 210 37 0 0 chr11 4633431 4633458 -144150014 + (TTTTTA)n Simple_repeat Simple_repeat 4 30 0 2982 41 0 3 chr11 4633459 4633797 -144149675 - L1PA3 LINE L1 -3 6152 5816 615 251 53 112 chr11 4634358 4634732 -144148740 - MLT2C1 LTR ERVL -2 395 44 * 621 196 67 45 chr11 4634568 4634747 -144148725 - MLT1E3 LTR MaLR -393 231 49 428 316 22 7 chr11 4634752 4634891 -144148581 - MLT2F LTR ERVL -522 141 1 617 324 16 5 chr11 4635215 4635400 -144148072 + MER5A DNA MER1_type 3 189 0 228 200 0 0 chr11 4637760 4637820 -144145652 + (TATG)n Simple_repeat Simple_repeat 2 61 0 304 237 69 92 chr11 4637891 4638022 -144145450 - MIR SINE MIR -13 249 122 1738 60 9 0 chr11 4640552 4640768 -144142704 - L1PA5 LINE L1 -5 6149 5932 2383 81 7 3 chr11 4640774 4641081 -144142391 - AluY SINE Alu -3 308 1 2499 70 0 0 chr11 4641851 4642151 -144141321 - AluY SINE Alu -11 300 1 456 111 0 14 chr11 4643302 4643374 -144140098 - L1P LINE L1 -1268 4878 4808 2299 85 3 10 chr11 4643985 4644290 -144139182 - AluSq SINE Alu -10 303 1 3932 213 24 41 chr11 4644577 4645408 -144138064 + L1M2 LINE L1 1290 2101 -4748 2344 103 0 3 chr11 4645408 4645719 -144137753 + AluSg SINE Alu 1 310 0 3932 213 24 41 chr11 4645719 4645925 -144137547 + L1M2 LINE L1 2101 2309 -4540 1713 151 5 21 chr11 4645921 4646047 -144137425 + L1PA15 LINE L1 4366 4492 -1673 * 2466 90 0 3 chr11 4646047 4646358 -144137114 + AluY SINE Alu 1 310 -1 1713 151 5 21 chr11 4646358 4647949 -144135523 + L1PA15 LINE L1 4492 6158 -7 4648 234 55 7 chr11 4647952 4648956 -144134516 + ERVL LTR ERVL 2877 3928 -1836 * 5333 204 22 2 chr11 4648954 4649936 -144133536 + ERVL LTR ERVL 4325 5326 -438 2366 63 0 0 chr11 4650656 4650972 -144132500 - AluY SINE Alu 0 316 1 2214 118 0 0 chr11 4651376 4651663 -144131809 + AluSg SINE Alu 1 287 -23 288 303 58 10 chr11 4652304 4652458 -144131014 - MIR SINE MIR -64 144 13 330 161 42 8 chr11 4653081 4653199 -144130273 + (TA)n Simple_repeat Simple_repeat 1 122 0 301 175 10 136 chr11 4653211 4653314 -144130158 - L1MC4 LINE L1 -1339 6703 6614 2092 100 0 0 chr11 4653788 4654059 -144129413 - AluSq SINE Alu -12 301 31 1298 168 45 4 chr11 4654185 4654429 -144129043 - MSTB LTR MaLR -172 254 1 671 220 42 37 chr11 4654431 4654622 -144128850 + L1MA9 LINE L1 6083 6274 -38 199 362 116 15 chr11 4654825 4655024 -144128448 - MIR SINE MIR -26 236 18 23 54 0 0 chr11 4656061 4656098 -144127374 + AT_rich Low_complexity Low_complexity 1 37 0 267 326 71 14 chr11 4656913 4657054 -144126418 + MIR3 SINE MIR 7 155 -53 253 272 229 68 chr11 4658167 4658310 -144125162 - MLT1K LTR MaLR 0 588 469 1740 149 83 0 chr11 4658310 4658586 -144124886 + AluSx SINE Alu 1 299 -13 253 272 229 68 chr11 4658586 4658765 -144124707 - MLT1K LTR MaLR -119 469 214 2318 60 53 27 chr11 4658765 4659064 -144124408 - AluY SINE Alu -4 307 1 1476 191 67 0 chr11 4659559 4659826 -144123646 + AluJb SINE Alu 1 285 -27 2470 262 67 72 chr11 4659860 4660802 -144122670 + L1M4c LINE L1 818 1763 -4619 2070 137 3 0 chr11 4660802 4661102 -144122370 - AluSx SINE Alu -3 309 9 2470 262 67 72 chr11 4661102 4662793 -144120679 + L1M4c LINE L1 1763 3544 -2838 1701 251 33 17 chr11 4662835 4663294 -144120178 + L1M3e LINE L1 1 466 -6564 267 104 292 0 chr11 4663312 4663360 -144120112 + L1M4 LINE L1 4914 4975 -1171 * 1085 195 37 18 chr11 4663359 4663631 -144119841 + L1MA8 LINE L1 5858 6134 -157 1446 79 0 0 chr11 4663631 4663809 -144119663 - AluY SINE Alu -15 296 119 634 180 0 0 chr11 4663816 4663916 -144119556 - MER45A DNA AcHobo -16 162 63 466 301 138 22 chr11 4663985 4664261 -144119211 - LTR16C LTR ERVL -25 466 159 201 162 0 0 chr11 4664261 4664298 -144119174 + T-rich Low_complexity Low_complexity 1 37 0 5064 16 2 0 chr11 4664298 4664842 -144118630 - L1PA2 LINE L1 0 6155 5611 9398 27 3 0 chr11 4664842 4666163 -144117309 + L1PA2 LINE L1 4280 5604 -551 818 62 0 174 chr11 4666164 4666325 -144117147 - AluSq/x SINE Alu -179 133 2 328 315 28 9 chr11 4666325 4666432 -144117040 + L1M4c LINE L1 3771 3879 -2503 332 355 123 0 chr11 4669195 4669333 -144114139 + L2 LINE L2 2909 3063 -250 4043 68 20 31 chr11 4669818 4670397 -144113075 - PABL_A LTR ERV1 0 660 87 2219 108 0 0 chr11 4670397 4670693 -144112779 - AluSg SINE Alu -14 296 1 4043 68 20 31 chr11 4670693 4670719 -144112753 - PABL_A LTR ERV1 -573 87 62 1215 133 12 0 chr11 4670721 4670894 -144112578 + AluSq SINE Alu 4 178 -135 5062 110 207 102 chr11 4671358 4672765 -144110707 + pTR5 LTR ERV1 741 2295 -143 2333 54 48 0 chr11 4674187 4674302 -144109170 + AluY SINE Alu 1 109 -202 288 0 0 0 chr11 4674302 4674334 -144109138 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 2333 54 48 0 chr11 4674334 4674513 -144108959 + AluY SINE Alu 109 309 -2 327 310 85 99 chr11 4675159 4675280 -144108192 + L2 LINE L2 1626 1747 -1567 1477 156 35 44 chr11 4675280 4675619 -144107853 - L1MA7 LINE L1 0 6291 5956 327 310 85 99 chr11 4675619 4676348 -144107124 + L2 LINE L2 1747 2464 -850 323 325 62 58 chr11 4676838 4677130 -144106342 + L2 LINE L2 3016 3308 -5 514 147 68 0 chr11 4679181 4679311 -144104161 + L1MB1 LINE L1 6008 6161 -28 183 139 0 0 chr11 4681155 4681191 -144102281 + (CA)n Simple_repeat Simple_repeat 1 36 0 492 317 87 48 chr11 4681461 4681944 -144101528 + LTR33 LTR ERVL 16 517 -4 1963 152 0 41 chr11 4682637 4682953 -144100519 + AluJo SINE Alu 1 303 -9 22 0 0 0 chr11 4683033 4683055 -144100417 + AT_rich Low_complexity Low_complexity 1 22 0 1031 329 24 12 chr11 4683089 4683515 -144099957 + LTR16B LTR ERVL 34 464 0 1613 167 9 43 chr11 4683897 4684220 -144099252 + AluJb SINE Alu 1 312 0 1321 309 51 21 chr11 4684649 4685261 -144098211 + HERV16 LTR ERVL 947 1576 -3420 10072 225 23 53 chr11 4685325 4688005 -144095467 + L1P5 LINE L1 1973 4424 -2435 2184 118 0 25 chr11 4688005 4688319 -144095153 + AluSx SINE Alu 1 306 -6 10072 225 23 53 chr11 4688319 4690324 -144093148 + L1P5 LINE L1 4424 6488 -371 870 145 15 0 chr11 4690324 4690455 -144093017 + AluSq/x SINE Alu 1 133 -179 189 0 0 0 chr11 4690455 4690476 -144092996 + (A)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr11 4690671 4690694 -144092778 + AT_rich Low_complexity Low_complexity 1 23 0 375 257 0 0 chr11 4690903 4691016 -144092456 + L1P5 LINE L1 5668 5780 -376 574 214 5 102 chr11 4691021 4691227 -144092245 + AluJb SINE Alu 1 186 -126 350 242 0 40 chr11 4691277 4691404 -144092068 + FLAM_A SINE Alu 25 147 0 827 176 53 88 chr11 4691407 4691669 -144091803 + L1MA8 LINE L1 6035 6287 -4 22 0 0 0 chr11 4691897 4691919 -144091553 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr11 4692465 4692488 -144090984 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr11 4692629 4692653 -144090819 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr11 4692749 4692774 -144090698 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chr11 4693825 4693848 -144089624 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr11 4695324 4695345 -144088127 + AT_rich Low_complexity Low_complexity 1 21 0 549 89 13 0 chr11 4695563 4695642 -144087830 + MADE1 DNA Mariner 1 80 0 21 36 0 0 chr11 4695652 4695680 -144087792 + AT_rich Low_complexity Low_complexity 1 28 0 186 167 0 0 chr11 4695696 4695732 -144087740 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 224 349 82 41 chr11 4696166 4696312 -144087160 + L2 LINE L2 2962 3113 -159 853 270 89 32 chr11 4696757 4697387 -144086085 - L1ME3A LINE L1 -58 6112 5451 1154 99 22 63 chr11 4697681 4697776 -144085696 - L1MA3 LINE L1 0 6305 6208 2153 118 17 0 chr11 4697776 4698064 -144085408 + AluSx SINE Alu 1 293 -19 1154 99 22 63 chr11 4698064 4698190 -144085282 - L1MA3 LINE L1 -97 6208 6093 320 232 19 39 chr11 4700896 4701034 -144082438 + (TAA)n Simple_repeat Simple_repeat 3 139 -15 1736 184 0 0 chr11 4701034 4701338 -144082134 + AluSx SINE Alu 9 312 0 320 232 19 39 chr11 4701338 4701354 -144082118 + (TAA)n Simple_repeat Simple_repeat 139 154 0 2812 19 0 0 chr11 4701557 4701867 -144081605 + AluYb8 SINE Alu 1 310 -8 771 284 23 31 chr11 4702403 4702660 -144080812 - MLT2D LTR ERVL 0 414 160 1726 159 0 45 chr11 4702919 4703228 -144080244 - AluJb SINE Alu -9 303 9 26 0 0 0 chr11 4703654 4703680 -144079792 + AT_rich Low_complexity Low_complexity 1 26 0 2903 157 14 6 chr11 4704506 4705015 -144078457 - LTR10D LTR ERV1 0 513 1 1911 180 91 28 chr11 4705466 4705927 -144077545 - LTR2B LTR ERV1 0 490 1 207 0 0 0 chr11 4706345 4706368 -144077104 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 703 146 0 90 chr11 4706996 4707140 -144076332 + FLAM_C SINE Alu 1 131 -2 1984 119 10 35 chr11 4707209 4707519 -144075953 - AluSx SINE Alu -10 302 1 21 36 0 0 chr11 4707522 4707550 -144075922 + AT_rich Low_complexity Low_complexity 1 28 0 2305 50 16 10 chr11 4707769 4708072 -144075400 + AluY SINE Alu 1 305 -6 1698 191 91 14 chr11 4708098 4708518 -144074954 - MLT1C LTR MaLR 0 467 16 530 331 134 9 chr11 4709340 4709684 -144073788 - L2 LINE L2 -1 3312 2926 389 229 131 56 chr11 4709746 4710051 -144073421 + L1MB7 LINE L1 5850 6177 -1 256 409 0 0 chr11 4710065 4710158 -144073314 - L2 LINE L2 -319 2994 2902 2210 95 0 7 chr11 4712024 4712335 -144071137 - AluSc SINE Alu 0 309 1 1623 259 35 52 chr11 4713133 4713575 -144069897 - L1MB7 LINE L1 -104 6080 5653 2945 6 0 0 chr11 4713575 4713893 -144069579 + AluYb8 SINE Alu 1 318 0 1623 259 35 52 chr11 4713893 4714160 -144069312 - L1MB7 LINE L1 -531 5653 5383 1187 221 20 57 chr11 4714204 4714440 -144069032 - L1MB7 LINE L1 -1741 4405 4189 1748 157 40 13 chr11 4714440 4714740 -144068732 - AluSx SINE Alu -4 308 1 1187 221 20 57 chr11 4714740 4714906 -144068566 - L1MB7 LINE L1 -1957 4189 4018 270 0 0 0 chr11 4714910 4714940 -144068532 + (T)n Simple_repeat Simple_repeat 1 30 0 1577 112 65 4 chr11 4714971 4715203 -144068269 - AluSx SINE Alu -14 298 53 1628 225 27 9 chr11 4715206 4715651 -144067821 - L1MB7 LINE L1 -2156 3990 3538 433 296 27 0 chr11 4715716 4715902 -144067570 - L1MB7 LINE L1 -3317 2829 2639 315 224 10 31 chr11 4715952 4716050 -144067422 - MLT1D LTR MaLR -8 497 402 760 190 95 28 chr11 4716055 4716234 -144067238 + MLT1C LTR MaLR 276 466 -1 379 157 26 85 chr11 4716236 4716389 -144067083 - L1MCa LINE L1 -4030 2185 2042 189 153 76 7 chr11 4716459 4716603 -144066869 + (TA)n Simple_repeat Simple_repeat 1 154 0 22 48 0 48 chr11 4716620 4716682 -144066790 + AT_rich Low_complexity Low_complexity 1 59 0 284 202 31 23 chr11 4716698 4716827 -144066645 + (TA)n Simple_repeat Simple_repeat 1 130 0 825 207 103 16 chr11 4716831 4717175 -144066297 - L1MCa LINE L1 -4199 2016 1706 229 220 20 90 chr11 4717276 4717376 -144066096 - L1M4 LINE L1 -1858 4288 4196 2775 120 21 14 chr11 4717389 4717709 -144065763 - L1PA16 LINE L1 -12 6154 5829 2422 84 0 0 chr11 4717709 4718017 -144065455 - AluY SINE Alu -1 310 3 2775 120 21 14 chr11 4718017 4718128 -144065344 - L1PA16 LINE L1 -337 5829 5720 2485 112 8 3 chr11 4718128 4718512 -144064960 + L1P4 LINE L1 5292 5677 -489 729 252 14 28 chr11 4718546 4718828 -144064644 - L1M4 LINE L1 -1948 4198 3921 * 780 235 63 48 chr11 4718814 4719146 -144064326 - L1M4 LINE L1 -847 5299 4963 226 362 60 60 chr11 4719315 4719616 -144063856 + MLT1K LTR MaLR 4 304 -284 602 192 57 6 chr11 4720718 4720895 -144062577 - MER53 DNA DNA -3 186 1 2078 119 0 7 chr11 4721862 4722178 -144061294 + AluSx SINE Alu 1 314 0 21 57 0 0 chr11 4722181 4722216 -144061256 + AT_rich Low_complexity Low_complexity 1 35 0 1356 109 0 0 chr11 4723052 4723235 -144060237 - AluSp SINE Alu -11 302 120 1328 226 147 22 chr11 4724112 4724527 -144058945 - MLT1C LTR MaLR 0 467 1 21 0 0 0 chr11 4724597 4724618 -144058854 + AT_rich Low_complexity Low_complexity 1 21 0 246 355 23 17 chr11 4724780 4724952 -144058520 + MIR SINE MIR 40 212 -50 25 0 0 0 chr11 4724959 4724984 -144058488 + AT_rich Low_complexity Low_complexity 1 25 0 1455 194 126 55 chr11 4725371 4725793 -144057679 - MLT2B1 LTR ERVL 0 520 69 361 214 90 0 chr11 4725810 4725899 -144057573 - MLT2B1 LTR ERVL -416 99 3 214 205 26 0 chr11 4726006 4726084 -144057388 + (TA)n Simple_repeat Simple_repeat 2 81 0 2132 86 0 83 chr11 4726143 4726469 -144057003 - AluSq SINE Alu -14 299 1 1068 255 28 61 chr11 4727235 4727777 -144055695 - MLT1E1 LTR MaLR 0 593 23 3616 35 0 0 chr11 4728454 4728915 -144054557 - L1P LINE L1 -2802 3344 2884 * 10161 42 1 0 chr11 4728914 4730159 -144053313 + L1P LINE L1 3335 4580 -1566 3832 87 14 40 chr11 4730414 4731033 -144052439 - L1MA2 LINE L1 0 6304 5702 322 318 19 0 chr11 4731231 4731338 -144052134 + L1MC4 LINE L1 6608 6716 -1326 1440 254 42 26 chr11 4731479 4731909 -144051563 + L1MB5 LINE L1 5690 6126 -48 2829 104 42 82 chr11 4731920 4732496 -144050976 - L1MA1 LINE L1 0 6302 5750 786 50 0 20 chr11 4732498 4732599 -144050873 + L1MA1 LINE L1 5651 5749 -553 261 186 0 14 chr11 4732599 4732669 -144050803 + L1MB3 LINE L1 6115 6183 0 459 324 7 0 chr11 4732794 4732933 -144050539 - Charlie1 DNA MER1_type -2621 140 1 2328 107 0 3 chr11 4733361 4733669 -144049803 - AluSq SINE Alu -6 307 1 236 210 16 0 chr11 4734586 4734648 -144048824 + (TGAA)n Simple_repeat Simple_repeat 3 65 0 1156 155 117 29 chr11 4734974 4735213 -144048259 - L1MA4 LINE L1 -388 5912 5653 2062 159 26 5 chr11 4735214 4735603 -144047869 + L1MA4 LINE L1 5899 6295 -5 236 372 53 21 chr11 4737111 4737299 -144046173 - MIR SINE MIR -13 249 56 282 287 70 17 chr11 4737468 4737583 -144045889 + MIR SINE MIR 53 173 -89 953 202 33 24 chr11 4738730 4739061 -144044411 + L1MA9 LINE L1 3125 3458 -2688 * 1161 166 5 0 chr11 4739036 4739247 -144044225 + L1MA9 LINE L1 4803 5014 -1132 27 0 0 0 chr11 4740525 4740552 -144042920 + AT_rich Low_complexity Low_complexity 1 27 0 2019 118 14 0 chr11 4742860 4743157 -144040315 + AluSx SINE Alu 1 301 -11 1699 199 37 20 chr11 4743352 4743754 -144039718 + L1MA9 LINE L1 5743 6151 -161 34 24 0 0 chr11 4743920 4743961 -144039511 + AT_rich Low_complexity Low_complexity 1 41 0 2070 89 40 6 chr11 4743965 4744290 -144039182 - L1MA1 LINE L1 0 6302 5967 1069 292 18 12 chr11 4745179 4745511 -144037961 + L1M4 LINE L1 361 694 -5848 1374 214 37 29 chr11 4745659 4746010 -144037462 + L1M4 LINE L1 4477 4830 -1814 1312 274 19 7 chr11 4746015 4746445 -144037027 + L1M4 LINE L1 4965 5399 -1245 264 108 0 0 chr11 4746457 4746494 -144036978 + L1MA7 LINE L1 6072 6108 -183 * 7392 258 18 6 chr11 4746479 4748578 -144034894 - L1 LINE L1 -1810 4336 2213 2785 206 186 12 chr11 4748577 4749467 -144034005 + L1 LINE L1 4307 5351 -795 * 661 44 2 1 chr11 4749567 4749657 -144033815 - L1MC/D LINE L1 -356 5799 5707 392 245 27 27 chr11 4750191 4750338 -144033134 - L1ME LINE L1 -381 5789 5643 23 0 0 0 chr11 4752357 4752380 -144031092 + AT_rich Low_complexity Low_complexity 1 23 0 1143 176 42 0 chr11 4753600 4753866 -144029606 - L1ME LINE L1 -743 5403 5164 1110 86 0 6 chr11 4753873 4754035 -144029437 + L1PA12 LINE L1 6008 6168 0 301 289 74 33 chr11 4754667 4754909 -144028563 - L1ME LINE L1 -1818 4328 4077 25 0 0 0 chr11 4755049 4755074 -144028398 + AT_rich Low_complexity Low_complexity 1 25 0 289 269 53 30 chr11 4755074 4755138 -144028334 + L1M4 LINE L1 4323 4384 -1762 5745 25 1 6 chr11 4755138 4755860 -144027612 + L1PA4 LINE L1 5463 6181 0 289 269 53 30 chr11 4755860 4756058 -144027414 + L1M4 LINE L1 4384 4592 -1554 310 356 56 0 chr11 4756150 4756310 -144027162 + L1M4 LINE L1 4698 4866 -1280 474 259 0 0 chr11 4756447 4756555 -144026917 + L1M2a LINE L1 8 115 -7053 3837 184 45 21 chr11 4756564 4757654 -144025818 + L1M2a LINE L1 1524 2655 -4513 382 378 22 6 chr11 4757728 4757908 -144025564 - L2 LINE L2 -2926 388 206 216 211 19 0 chr11 4759809 4759861 -144023611 + CT-rich Low_complexity Low_complexity 2 54 0 259 283 106 35 chr11 4760601 4760799 -144022673 - MIR SINE MIR 0 262 51 268 141 14 14 chr11 4761824 4761895 -144021577 + CT-rich Low_complexity Low_complexity 2 72 0 859 245 102 32 chr11 4762634 4763079 -144020393 - Charlie1b DNA MER1_type -44 479 6 3189 68 13 44 chr11 4764949 4765353 -144018119 + MLT2A1 LTR ERVL 1 391 -53 225 0 0 0 chr11 4765353 4765378 -144018094 + (CA)n Simple_repeat Simple_repeat 2 26 0 3189 68 13 44 chr11 4765378 4765431 -144018041 + MLT2A1 LTR ERVL 391 444 0 206 363 55 11 chr11 4766165 4766256 -144017216 - MIR3 SINE MIR -3 205 111 2874 149 114 5 chr11 4766997 4767568 -144015904 - LTR24C LTR ERV1 0 635 3 1125 240 10 13 chr11 4768019 4768306 -144015166 - L1P3 LINE L1 -561 5611 5322 260 260 39 13 chr11 4768471 4768548 -144014924 + Tigger5 DNA MER2_type 1 79 -2244 1409 67 0 10 chr11 4768878 4769072 -144014400 + L1M1 LINE L1 5625 5816 -486 371 180 0 0 chr11 4769072 4769133 -144014339 + Tigger5 DNA MER2_type 2262 2322 -1 27 49 0 0 chr11 4770560 4770601 -144012871 + AT_rich Low_complexity Low_complexity 1 41 0 1294 112 28 28 chr11 4770605 4770702 -144012770 - L1PA16 LINE L1 -9 6157 6061 1661 143 62 54 chr11 4770702 4771074 -144012398 + THE1C LTR MaLR 1 375 0 1294 112 28 28 chr11 4771074 4771190 -144012282 - L1PA16 LINE L1 -104 6062 5944 199 309 15 15 chr11 4771703 4771771 -144011701 - MIR SINE MIR -63 145 78 580 306 53 51 chr11 4772807 4773202 -144010270 + LTR16A1 LTR ERVL 62 457 0 932 211 22 0 chr11 4773353 4773538 -144009934 - MER5A DNA MER1_type 0 189 1 1001 246 0 5 chr11 4773898 4774113 -144009359 - MER58A DNA MER1_type 0 224 11 1871 151 47 0 chr11 4774927 4775225 -144008247 + AluSx SINE Alu 1 312 0 1895 81 0 67 chr11 4775302 4775585 -144007887 + AluY SINE Alu 36 299 -12 265 252 87 26 chr11 4775972 4776087 -144007385 + MIR SINE MIR 113 234 -28 4489 184 27 30 chr11 4776282 4777022 -144006450 - L1PA16 LINE L1 -16 6150 5409 1725 180 14 0 chr11 4777022 4777305 -144006167 - AluJb SINE Alu -25 287 1 4489 184 27 30 chr11 4777305 4778442 -144005030 - L1PA16 LINE L1 -757 5409 4285 25 0 0 0 chr11 4779351 4779376 -144004096 + AT_rich Low_complexity Low_complexity 1 25 0 252 0 0 0 chr11 4779522 4779550 -144003922 + (CA)n Simple_repeat Simple_repeat 2 29 0 3548 212 14 16 chr11 4781419 4782715 -144000757 + L1MB3 LINE L1 4498 5787 -396 322 173 12 25 chr11 4782717 4782798 -144000674 + (TATG)n Simple_repeat Simple_repeat 3 82 0 2078 162 15 8 chr11 4782802 4783197 -144000275 + L1MB3 LINE L1 5786 6183 0 1623 152 82 0 chr11 4783382 4783652 -143999820 - AluSg SINE Alu -18 292 1 406 293 75 40 chr11 4784543 4785065 -143998407 + L1ME4a LINE L1 5582 6121 0 300 164 119 0 chr11 4788225 4788292 -143995180 + L1PA15 LINE L1 6089 6163 -2 267 255 39 20 chr11 4788568 4788670 -143994802 - Charlie8 DNA MER1_type -2220 197 94 765 250 59 0 chr11 4788758 4788962 -143994510 + L1PA16 LINE L1 5951 6166 0 22 0 0 0 chr11 4789034 4789056 -143994416 + AT_rich Low_complexity Low_complexity 1 22 0 305 339 35 29 chr11 4789359 4789530 -143993942 + MIR SINE MIR 91 262 0 1849 171 3 7 chr11 4789640 4789944 -143993528 - AluSx SINE Alu -9 303 1 197 348 22 11 chr11 4790398 4790487 -143992985 - L2 LINE L2 -449 2865 2776 324 48 0 0 chr11 4790804 4790846 -143992626 + (CA)n Simple_repeat Simple_repeat 1 42 0 684 220 28 98 chr11 4790920 4791134 -143992338 - MIR SINE MIR -62 200 2 2277 91 109 0 chr11 4791288 4791628 -143991844 + MER51B LTR ERV1 1 377 0 26 0 0 0 chr11 4791933 4791959 -143991513 + AT_rich Low_complexity Low_complexity 1 26 0 1847 145 19 26 chr11 4792016 4792181 -143991291 + AluSx SINE Alu 1 166 -146 2263 142 28 14 chr11 4792181 4792540 -143990932 + THE1B LTR MaLR 1 364 0 11646 87 10 3 chr11 4792540 4794108 -143989364 + THE1B-int LTR MaLR 1 1580 0 2315 124 42 14 chr11 4794108 4794462 -143989010 + THE1B LTR MaLR 1 364 0 1847 145 19 26 chr11 4794462 4794604 -143988868 + AluSx SINE Alu 163 308 -4 200 400 0 0 chr11 4794746 4794826 -143988646 - L2 LINE L2 -246 3067 2988 2362 172 24 11 chr11 4794917 4795382 -143988090 - L1MA8 LINE L1 -347 5944 5474 209 192 39 0 chr11 4795923 4795975 -143987497 + A-rich Low_complexity Low_complexity 5 58 0 4840 31 0 3 chr11 4796363 4796941 -143986531 + L1PA4 LINE L1 5580 6155 0 412 75 0 0 chr11 4796942 4796995 -143986477 + L1PA10 LINE L1 5818 5870 -298 22 0 0 0 chr11 4796995 4797017 -143986455 + AT_rich Low_complexity Low_complexity 1 22 0 783 117 0 66 chr11 4797281 4797418 -143986054 - MER1B DNA MER1_type 0 339 212 3618 107 15 0 chr11 4797428 4798035 -143985437 - L1PBa LINE L1 -5015 1848 1085 3926 148 96 3 chr11 4798052 4798796 -143984676 - L1PBa LINE L1 -5739 1124 160 3726 191 19 0 chr11 4798796 4799551 -143983921 + L1MA7 LINE L1 5523 6291 0 1194 187 0 35 chr11 4799716 4799946 -143983526 - AluJb SINE Alu -12 300 79 267 404 40 27 chr11 4799984 4800268 -143983204 - L2 LINE L2 -285 2987 2702 507 232 63 7 chr11 4800555 4800697 -143982775 - L1MA10 LINE L1 -10 6324 6175 31 44 0 0 chr11 4800700 4800745 -143982727 + AT_rich Low_complexity Low_complexity 1 45 0 478 265 15 22 chr11 4800751 4800887 -143982585 + MLT1F1 LTR MaLR 1 135 -407 1312 285 9 6 chr11 4800887 4801210 -143982262 + L1M3c LINE L1 7 330 -5811 493 248 9 0 chr11 4801208 4801317 -143982155 - L1M3c LINE L1 -5695 446 337 * 1627 148 45 7 chr11 4801318 4801481 -143981991 + L1MA9 LINE L1 5987 6142 -170 180 77 0 0 chr11 4801481 4801507 -143981965 + (CA)n Simple_repeat Simple_repeat 2 27 0 1627 148 45 7 chr11 4801507 4801653 -143981819 + L1MA9 LINE L1 6142 6308 -4 786 287 31 11 chr11 4801825 4802086 -143981386 + MLT1F1 LTR MaLR 302 567 0 3488 38 2 29 chr11 4802248 4802701 -143980771 - L1PA6 LINE L1 -6 6148 5708 1403 69 0 0 chr11 4802701 4802876 -143980596 + L1PA6 LINE L1 5544 5718 -436 * 6348 199 9 4 chr11 4802860 4804140 -143979332 - L1PA15-16 LINE L1 -1586 5263 3977 3789 246 16 19 chr11 4804137 4805399 -143978073 - L1PA15-16 LINE L1 -3684 3165 1895 * 480 18 0 0 chr11 4805402 4805459 -143978013 + (TCTA)n Simple_repeat Simple_repeat 2 58 0 2220 153 42 83 chr11 4805549 4805645 -143977827 + L1MA4 LINE L1 5762 5860 -440 1895 122 46 20 chr11 4805645 4805949 -143977523 + AluSx SINE Alu 1 312 0 2220 153 42 83 chr11 4805949 4806406 -143977066 + L1MA4 LINE L1 5860 6292 -8 216 97 0 0 chr11 4806766 4806797 -143976675 + (CA)n Simple_repeat Simple_repeat 1 31 0 21 0 0 0 chr11 4807512 4807533 -143975939 + AT_rich Low_complexity Low_complexity 1 21 0 3171 90 0 0 chr11 4809167 4809599 -143973873 - L1PA7 LINE L1 0 6154 5723 325 55 68 0 chr11 4810842 4810915 -143972557 + (TA)n Simple_repeat Simple_repeat 2 79 0 23 0 0 0 chr11 4810921 4810944 -143972528 + AT_rich Low_complexity Low_complexity 1 23 0 324 133 36 0 chr11 4812320 4812403 -143971069 + CT-rich Low_complexity Low_complexity 2 87 0 801 357 65 15 chr11 4812601 4813077 -143970395 + L2 LINE L2 2814 3313 0 310 315 79 43 chr11 4813370 4813675 -143969797 + L1M4 LINE L1 2963 3278 -2868 2118 20 0 0 chr11 4813686 4813932 -143969540 - L1PA4 LINE L1 -5 6150 5905 242 237 151 0 chr11 4814240 4814333 -143969139 - MLT1E LTR MaLR -167 400 294 198 0 0 0 chr11 4814347 4814369 -143969103 + (T)n Simple_repeat Simple_repeat 1 22 0 231 94 0 0 chr11 4814452 4814484 -143968988 - L1P LINE L1 -728 5426 5395 2915 62 20 20 chr11 4814484 4814888 -143968584 + L1PA8 LINE L1 5769 6172 0 506 285 13 7 chr11 4814925 4815076 -143968396 - MLT1E LTR MaLR -439 154 3 471 274 85 33 chr11 4815077 4815347 -143968125 + L1ME3A LINE L1 5721 6004 -166 1017 241 133 22 chr11 4815379 4815703 -143967769 - MLT2B1 LTR ERVL -158 362 3 301 322 41 16 chr11 4815707 4815828 -143967644 + L1ME3A LINE L1 6043 6166 -4 218 175 48 0 chr11 4816123 4816186 -143967286 + (AATAG)n Simple_repeat Simple_repeat 4 69 0 5049 179 18 12 chr11 4817017 4818834 -143964638 - L1PB4 LINE L1 -8 6148 4315 21 36 0 0 chr11 4818839 4818867 -143964605 + AT_rich Low_complexity Low_complexity 1 28 0 2716 159 11 0 chr11 4818902 4819360 -143964112 - L1PA16 LINE L1 -105 6061 5599 * 3978 193 30 68 chr11 4819356 4820842 -143962630 + L1PA16 LINE L1 4186 5600 -566 2269 218 19 0 chr11 4820839 4821353 -143962119 - L1PB4 LINE L1 -1818 4328 3805 * 202 395 35 0 chr11 4823069 4823183 -143960289 + MIR SINE MIR 67 184 -78 189 0 0 0 chr11 4825903 4825924 -143957548 + (GA)n Simple_repeat Simple_repeat 2 22 0 2712 140 39 16 chr11 4827065 4827552 -143955920 + L1PA16 LINE L1 5660 6157 -9 278 54 0 0 chr11 4827554 4827591 -143955881 + L1MA6 LINE L1 6112 6148 -152 12353 33 0 0 chr11 4827601 4829839 -143953633 - L1PA4 LINE L1 -3 6152 3914 683 170 14 0 chr11 4829839 4829978 -143953494 + L1MA6 LINE L1 6154 6296 -4 3704 195 38 55 chr11 4829987 4830049 -143953423 + L1MB5 LINE L1 4900 4962 -1212 2129 122 3 3 chr11 4830049 4830343 -143953129 + AluSc SINE Alu 6 299 -10 3704 195 38 55 chr11 4830343 4831036 -143952436 + L1MB5 LINE L1 4962 5627 -547 2176 96 6 16 chr11 4831036 4831350 -143952122 + AluY SINE Alu 1 311 0 3704 195 38 55 chr11 4831350 4831873 -143951599 + L1MB5 LINE L1 5627 6157 -17 1322 237 95 94 chr11 4832397 4832942 -143950530 + MER77 LTR ERV1 54 599 -6 273 313 102 0 chr11 4833192 4833358 -143950114 - L1M4 LINE L1 -1307 4839 4657 421 321 57 24 chr11 4833462 4833671 -143949801 + MIR SINE MIR 47 262 0 182 219 16 0 chr11 4835080 4835144 -143948328 + (TA)n Simple_repeat Simple_repeat 1 65 0 243 139 25 13 chr11 4835667 4835746 -143947726 + C-rich Low_complexity Low_complexity 4 83 0 646 126 0 0 chr11 4835847 4835950 -143947522 - L1 LINE L1 -1565 4581 4479 520 265 36 14 chr11 4835984 4836207 -143947265 - L1M4 LINE L1 -1349 4797 4570 12106 148 45 10 chr11 4836207 4836921 -143946551 + Tigger1 DNA MER2_type 252 939 -1479 333 0 0 0 chr11 4836921 4836958 -143946514 + (TC)n Simple_repeat Simple_repeat 2 38 0 297 109 0 0 chr11 4836957 4837012 -143946460 + (TA)n Simple_repeat Simple_repeat 2 56 0 * 12106 148 45 10 chr11 4836958 4837012 -143946460 + Tigger1 DNA MER2_type 939 990 -1428 2014 129 3 3 chr11 4837012 4837298 -143946174 - AluSq SINE Alu -27 286 1 12106 148 45 10 chr11 4837298 4838675 -143944797 + Tigger1 DNA MER2_type 990 2418 0 218 326 123 36 chr11 4840183 4840321 -143943151 + L3 LINE CR1 1304 1453 -124 1068 108 30 0 chr11 4840338 4840504 -143942968 + L1PA13 LINE L1 5993 6163 0 398 397 39 0 chr11 4840974 4841231 -143942241 - L2 LINE L2 -339 2975 2709 351 0 0 0 chr11 4841560 4841599 -143941873 + (CA)n Simple_repeat Simple_repeat 2 40 0 186 43 0 0 chr11 4841598 4841621 -143941851 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 210 143 0 0 chr11 4841765 4841800 -143941672 + (GAAA)n Simple_repeat Simple_repeat 4 38 0 444 182 26 0 chr11 4844502 4844579 -143938893 - MER2 DNA MER2_type 0 345 267 1125 173 20 10 chr11 4844605 4844807 -143938665 - MER2 DNA MER2_type -135 210 7 207 358 32 0 chr11 4845376 4845471 -143938001 - MIR SINE MIR -51 211 114 354 186 44 9 chr11 4845848 4845961 -143937511 + (CAGAGA)n Simple_repeat Simple_repeat 2 118 0 1306 228 140 33 chr11 4846635 4847137 -143936335 - LTR10B LTR ERV1 -3 544 1 5640 263 9 7 chr11 4847141 4848510 -143934962 - HERVI LTR ERV1 -2 7783 6412 1604 219 19 17 chr11 4848858 4849219 -143934253 - HERVI LTR ERV1 -3737 3159 2798 622 198 9 0 chr11 4849190 4849306 -143934166 - HERVI LTR ERV1 -2164 4485 4369 * 299 211 33 78 chr11 4849326 4849416 -143934056 - HERVI LTR ERV1 -2369 5416 5331 * 337 237 31 41 chr11 4849385 4849482 -143933990 - HERVI LTR ERV1 -2858 4927 4832 951 177 74 5 chr11 4849512 4849778 -143933694 - HERVI LTR ERV1 -3146 4639 4325 464 276 55 7 chr11 4849840 4849985 -143933487 - HERVI LTR ERV1 -3485 3164 3013 2594 197 50 68 chr11 4850568 4851644 -143931828 - HERVI LTR ERV1 -6786 999 3 947 194 172 95 chr11 4851666 4852171 -143931301 - LTR10B LTR ERV1 -3 544 1 817 102 8 0 chr11 4852295 4852413 -143931059 - L1P LINE L1 -3161 2985 2867 42 20 0 0 chr11 4853571 4853620 -143929852 + AT_rich Low_complexity Low_complexity 1 49 0 5880 221 94 44 chr11 4853664 4854493 -143928979 + L1MDa LINE L1 2937 3724 -3841 1780 88 0 24 chr11 4854493 4854742 -143928730 + L1PA8A LINE L1 5882 6124 -7 2495 62 0 3 chr11 4854743 4855047 -143928425 + AluY SINE Alu 1 303 -8 5880 221 94 44 chr11 4855047 4856953 -143926519 + L1MDa LINE L1 3723 5839 -1726 23 54 0 0 chr11 4857876 4857913 -143925559 + AT_rich Low_complexity Low_complexity 1 37 0 229 250 25 0 chr11 4859336 4859416 -143924056 + L1MC4 LINE L1 6620 6701 -1341 14080 159 45 8 chr11 4859430 4863845 -143919627 - L1PB1 LINE L1 0 6867 2619 204 67 0 0 chr11 4863845 4863875 -143919597 + (TTAG)n Simple_repeat Simple_repeat 3 32 0 1797 141 30 0 chr11 4863875 4864144 -143919328 - AluSx SINE Alu -35 277 1 14080 159 45 8 chr11 4864144 4865752 -143917720 - L1PB1 LINE L1 -4247 2620 620 803 169 14 0 chr11 4865732 4865880 -143917592 - L1PB1 LINE L1 -6663 200 51 * 452 225 50 6 chr11 4865987 4866169 -143917303 - L1M4 LINE L1 -2929 3217 3028 761 203 0 0 chr11 4866192 4866335 -143917137 - MSTD-int LTR MaLR -1589 146 4 1977 155 58 56 chr11 4866337 4866730 -143916742 - MSTD LTR MaLR -2 394 1 1131 44 0 0 chr11 4867275 4867412 -143916060 + L1PA3 LINE L1 6016 6152 -3 498 322 52 17 chr11 4868182 4868415 -143915057 - MIR SINE MIR -10 252 12 384 245 19 10 chr11 4868523 4868636 -143914836 - LTR67 LTR ERVL -4 553 440 31100 54 37 3 chr11 4869324 4873280 -143910192 + L1P LINE L1 13 4103 -2043 401 230 11 0 chr11 4873286 4873373 -143910099 + LTR26 LTR ERV1 516 603 0 684 314 14 35 chr11 4873395 4873682 -143909790 + L1ME LINE L1 188 468 -5602 606 94 24 0 chr11 4873685 4873770 -143909702 + L1P LINE L1 12 98 -6048 * 6745 66 2 19 chr11 4873764 4874652 -143908820 + L1P LINE L1 617 1489 -4657 10917 24 0 1 chr11 4874652 4876689 -143906783 + L1PA4 LINE L1 4114 6153 -2 1071 304 24 28 chr11 4876695 4877235 -143906237 + L1ME LINE L1 456 993 -5077 * 13786 162 75 26 chr11 4877224 4879786 -143903686 + L1M1 LINE L1 27 2713 -4852 5091 123 7 8 chr11 4880249 4881463 -143902009 + L1PA11 LINE L1 4745 5954 -220 1411 231 119 22 chr11 4882428 4882974 -143900498 - Zaphod DNA AcHobo -241 3790 3192 298 268 55 88 chr11 4884236 4884508 -143898964 + HERVFH21 LTR ERV1 1366 1628 -6629 937 283 57 56 chr11 4884694 4885721 -143897751 + HERVFH21 LTR ERV1 885 1923 -4731 2308 293 60 62 chr11 4885758 4888228 -143895244 + HERVFH21 LTR ERV1 1765 4940 -2348 335 126 27 35 chr11 4888677 4888750 -143894722 + HERVFH21 LTR ERV1 4614 4783 -1746 206 179 51 64 chr11 4888760 4888838 -143894634 + L2 LINE L2 2997 3073 -199 1042 80 7 7 chr11 4888870 4889007 -143894465 + AluSp SINE Alu 1 137 -176 9524 51 121 14 chr11 4889010 4890256 -143893216 + SVA Other Other 7 1386 0 702 285 63 59 chr11 4890257 4890782 -143892690 + HERVFH21 LTR ERV1 4686 5322 -1207 451 234 49 40 chr11 4892450 4892637 -143890835 + HERVFH21 LTR ERV1 4202 7147 -245 291 208 39 0 chr11 4892861 4892938 -143890534 + HERVFH21 LTR ERV1 6446 6525 -4 488 270 56 113 chr11 4895025 4895539 -143887933 - MLT1G LTR MaLR -42 548 64 1687 285 31 34 chr11 4895650 4896233 -143887239 + L1MEc LINE L1 39 619 -5777 577 227 78 17 chr11 4898611 4898790 -143884682 + L1P LINE L1 4254 4441 -1705 2266 99 0 29 chr11 4900299 4900612 -143882860 + AluSc SINE Alu 1 304 -5 293 97 16 97 chr11 4900902 4900964 -143882508 - U2 snRNA snRNA -131 57 1 203 167 0 21 chr11 4903823 4903871 -143879601 + CT-rich Low_complexity Low_complexity 2 48 0 202 200 0 0 chr11 4904415 4904455 -143879017 + (CA)n Simple_repeat Simple_repeat 1 40 0 1331 201 23 10 chr11 4905574 4905884 -143877588 - MER33 DNA MER1_type -22 302 1 183 100 0 0 chr11 4906580 4906610 -143876862 + (TTTTTA)n Simple_repeat Simple_repeat 3 32 0 206 206 44 0 chr11 4906619 4906687 -143876785 + (TTAA)n Simple_repeat Simple_repeat 1 71 0 * 215 187 53 41 chr11 4906651 4906822 -143876650 + (TATAA)n Simple_repeat Simple_repeat 1 173 0 505 94 9 113 chr11 4910355 4910461 -143873011 + LTR7 LTR ERV1 354 448 -2 14947 80 8 115 chr11 4910463 4913034 -143870438 + HERVH LTR ERV1 1 2297 -5416 1454 214 30 12 chr11 4913138 4913564 -143869908 - L1M4 LINE L1 -2976 3170 2737 552 263 234 24 chr11 4917339 4917719 -143865753 - LTR50 LTR ERVL -335 460 1 206 333 74 19 chr11 4920236 4920344 -143863128 - MIR SINE MIR -109 153 40 26 0 0 0 chr11 4920905 4920931 -143862541 + AT_rich Low_complexity Low_complexity 1 26 0 327 26 0 0 chr11 4921973 4922012 -143861460 - L1PA16 LINE L1 -5 6161 6123 5015 154 11 4 chr11 4922136 4922948 -143860524 - L1PA16 LINE L1 -41 6125 5308 22 56 0 0 chr11 4923233 4923269 -143860203 + AT_rich Low_complexity Low_complexity 1 36 0 218 347 54 27 chr11 4923349 4923496 -143859976 - L2 LINE L2 0 3272 3122 244 298 64 86 chr11 4924351 4924817 -143858655 + L1MEc LINE L1 333 788 -5608 2024 156 3 6 chr11 4924825 4925153 -143858319 - MER50 LTR ERV1 -24 710 384 349 73 91 0 chr11 4925266 4925321 -143858151 + L1PA15 LINE L1 6106 6165 0 21 0 0 0 chr11 4926169 4926190 -143857282 + AT_rich Low_complexity Low_complexity 1 21 0 761 124 16 47 chr11 4926326 4926455 -143857017 + LTR8 LTR ERV1 567 691 0 8397 101 15 52 chr11 4926455 4927752 -143855720 + HUERS-P1 LTR ERV1 1 1250 -5013 8874 123 25 56 chr11 4927795 4929341 -143854131 + HUERS-P1 LTR ERV1 1215 2711 -3552 295 319 30 21 chr11 4929341 4929576 -143853896 - L1M4 LINE L1 -2461 3685 3449 1418 262 42 39 chr11 4929780 4930212 -143853260 - L1MEc LINE L1 -5928 468 36 2187 124 0 0 chr11 4930342 4930641 -143852831 + AluSp SINE Alu 1 299 -14 1990 128 59 0 chr11 4931733 4932022 -143851450 - AluSg SINE Alu -4 306 1 215 340 71 29 chr11 4932962 4933200 -143850272 - L2 LINE L2 -1035 2279 2032 241 259 62 25 chr11 4933227 4933308 -143850164 - L2 LINE L2 -1363 1951 1868 2138 135 0 3 chr11 4933737 4934033 -143849439 - AluSx SINE Alu -17 295 1 1328 131 0 15 chr11 4934934 4935133 -143848339 - AluSq SINE Alu -117 196 1 267 333 16 24 chr11 4935243 4935366 -143848106 - L2 LINE L2 -2 3311 3190 229 390 39 0 chr11 4935456 4935533 -143847939 + L2 LINE L2 3149 3228 -44 292 350 42 8 chr11 4935668 4935788 -143847684 - L2 LINE L2 -2068 1246 1123 854 288 141 30 chr11 4935791 4936260 -143847212 + LTR33 LTR ERVL 1 521 0 803 228 25 30 chr11 4936477 4936679 -143846793 + MIR SINE MIR 41 241 -21 228 241 0 0 chr11 4937163 4937221 -143846251 + GA-rich Low_complexity Low_complexity 3 60 0 253 271 14 14 chr11 4937225 4937295 -143846177 + L1MEd LINE L1 460 529 -5590 202 273 131 10 chr11 4939790 4939889 -143843583 + L3b LINE CR1 1268 1378 -205 384 357 151 24 chr11 4940054 4940797 -143842675 + L2 LINE L2 1938 2774 -540 23 54 0 0 chr11 4941357 4941394 -143842078 + AT_rich Low_complexity Low_complexity 1 37 0 379 96 0 0 chr11 4941509 4941561 -143841911 - MADE1 DNA Mariner 0 80 29 5950 130 19 9 chr11 4942320 4943885 -143839587 - L1MA1 LINE L1 -127 6175 4589 2417 163 25 83 chr11 4944422 4944672 -143838800 - MER66B LTR ERV1 0 486 280 2125 128 0 7 chr11 4944672 4944976 -143838496 - AluSx SINE Alu -10 302 1 2417 163 25 83 chr11 4944976 4945241 -143838231 - MER66B LTR ERV1 -206 280 1 300 152 0 0 chr11 4946075 4946121 -143837351 + HERVK11 LTR ERVK 6722 6767 -1186 * 453 167 10 31 chr11 4946112 4946208 -143837264 + HERVK11 LTR ERVK 6963 7056 -897 * 2772 63 0 0 chr11 4946165 4946497 -143836975 - HERVK11 LTR ERVK -4731 3222 2891 * 3158 87 52 0 chr11 4946483 4946909 -143836563 - HERVK11 LTR ERVK -6341 1612 1165 2323 118 24 9 chr11 4946884 4947479 -143835993 - HERVK11 LTR ERVK -7081 872 206 * 2372 113 3 0 chr11 4947474 4947794 -143835678 - HERVK11 LTR ERVK -7632 321 1 5640 153 40 53 chr11 4947794 4948880 -143834592 - MER11C LTR ERVK 0 1071 1 2033 56 4 8 chr11 4949050 4949316 -143834156 + LTR7 LTR ERV1 1 265 -185 1860 111 15 19 chr11 4949714 4949976 -143833496 + AluSg SINE Alu 37 297 -13 22 56 0 0 chr11 4950174 4950210 -143833262 + AT_rich Low_complexity Low_complexity 1 36 0 217 328 86 9 chr11 4950680 4950796 -143832676 + MIR SINE MIR 57 181 -81 1771 219 19 32 chr11 4951171 4951541 -143831931 - MLT1A1 LTR MaLR 0 365 1 1813 200 42 12 chr11 4952774 4953188 -143830284 + L1MA9 LINE L1 5856 6282 -30 193 151 38 19 chr11 4953195 4953248 -143830224 + GA-rich Low_complexity Low_complexity 3 56 0 408 269 43 14 chr11 4954147 4954288 -143829184 + MIR SINE MIR 45 189 -73 238 311 59 0 chr11 4954481 4954616 -143828856 - MIR SINE MIR -1 261 119 573 157 38 22 chr11 4954623 4954740 -143828732 + MLT1C LTR MaLR 1 106 -361 463 251 165 75 chr11 4955353 4955898 -143827574 - L1MEd LINE L1 -4862 1257 664 1394 233 24 68 chr11 4955927 4956309 -143827163 + MLT1A1 LTR MaLR 1 365 0 246 136 0 0 chr11 4956425 4956469 -143827003 + (TG)n Simple_repeat Simple_repeat 1 44 0 376 106 30 15 chr11 4956583 4956649 -143826823 + Tigger3(Golem) DNA MER2_type 2431 2497 -532 198 103 0 0 chr11 4956804 4956833 -143826639 + (TA)n Simple_repeat Simple_repeat 2 30 0 5305 186 154 107 chr11 4957195 4958865 -143824607 - MER52A LTR ERV1 0 1755 7 1823 290 56 23 chr11 4959193 4959837 -143823635 + L1M2b LINE L1 1163 1827 -5382 1820 205 44 0 chr11 4959838 4960180 -143823292 + MSTA LTR MaLR 1 357 -71 608 355 12 0 chr11 4960180 4960425 -143823047 + MSTA-int LTR MaLR 8 255 -1396 3821 193 44 31 chr11 4960525 4961322 -143822150 + MLT1A1-int LTR MaLR 49 855 -796 3271 174 61 2 chr11 4961320 4961894 -143821578 + MLT1A1-int LTR MaLR 1044 1651 0 * 2583 157 36 2 chr11 4961894 4962307 -143821165 + MSTA LTR MaLR 1 427 -1 4980 161 11 41 chr11 4962310 4962910 -143820562 + L1M2 LINE L1 1478 2036 -4813 913 128 0 0 chr11 4962910 4963027 -143820445 + 5S rRNA rRNA 1 117 -4 4980 161 11 41 chr11 4963027 4963460 -143820012 + L1M2 LINE L1 2036 2480 -4369 748 100 10 0 chr11 4963460 4963560 -143819912 - MSTA LTR MaLR -319 109 9 6893 203 47 16 chr11 4963560 4965304 -143818168 + L1M2 LINE L1 2767 4565 -2283 1541 157 7 54 chr11 4965304 4965598 -143817874 - THE1B LTR MaLR 0 364 85 241 296 61 41 chr11 4966239 4966337 -143817135 + L2 LINE L2 3169 3268 -4 21 0 0 0 chr11 4966351 4966372 -143817100 + AT_rich Low_complexity Low_complexity 1 21 0 753 333 40 50 chr11 4968281 4968684 -143814788 + LTR16A LTR ERVL 52 450 0 22 56 0 0 chr11 4969017 4969053 -143814419 + AT_rich Low_complexity Low_complexity 1 36 0 182 253 287 0 chr11 4969424 4969511 -143813961 - L2 LINE L2 -493 2821 2710 378 337 139 34 chr11 4969613 4969881 -143813591 - L2 LINE L2 -2503 811 490 180 111 0 0 chr11 4969881 4969908 -143813564 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 378 337 139 34 chr11 4969908 4970019 -143813453 - L2 LINE L2 -2824 490 392 209 252 34 101 chr11 4970036 4970155 -143813317 + MIR SINE MIR 136 246 -16 210 279 118 0 chr11 4970566 4970634 -143812838 - L2 LINE L2 0 3313 3238 32 26 0 0 chr11 4970679 4970718 -143812754 + AT_rich Low_complexity Low_complexity 1 39 0 205 282 59 24 chr11 4973004 4973089 -143810383 + MIR SINE MIR 17 104 -104 256 376 43 0 chr11 4973692 4973809 -143809663 - MIR3 SINE MIR -53 155 34 416 303 32 27 chr11 4974362 4974534 -143808938 + MIR SINE MIR 34 206 -56 3484 60 0 9 chr11 4974780 4975232 -143808240 - LTR7 LTR ERV1 -2 448 1 2261 88 48 13 chr11 4975232 4975607 -143807865 - HERVH LTR ERV1 0 7713 7326 1343 120 18 5 chr11 4975609 4975826 -143807646 - HERVH LTR ERV1 -1894 5819 5600 4001 153 1 1 chr11 4975827 4976489 -143806983 - HERVH LTR ERV1 -2564 5149 4488 2774 124 7 2 chr11 4976491 4976950 -143806522 - HERVH LTR ERV1 -3720 3993 3533 271 352 62 14 chr11 4977057 4977202 -143806270 + MIR SINE MIR 100 251 -11 5542 37 0 4 chr11 4979732 4980407 -143803065 - L1PA4 LINE L1 0 6155 5484 210 143 0 0 chr11 4984112 4984147 -143799325 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 694 110 22 52 chr11 4984147 4984283 -143799189 - L1MA8 LINE L1 -507 5793 5662 1974 174 28 24 chr11 4984295 4984755 -143798717 + L1MA8 LINE L1 5825 6286 -5 555 249 52 29 chr11 4984977 4985150 -143798322 + MER33 DNA MER1_type 5 181 -143 505 179 62 0 chr11 4986551 4986696 -143796776 + MER33 DNA MER1_type 160 313 -11 282 329 174 18 chr11 4986956 4987175 -143796297 + L2 LINE L2 2595 2847 -467 626 369 47 8 chr11 4987809 4988172 -143795300 - LTR16A LTR ERVL -22 428 52 205 327 59 40 chr11 4990138 4990239 -143793233 - L2 LINE L2 -1 3271 3169 930 142 7 13 chr11 4990589 4990744 -143792728 - L1PB3 LINE L1 -17 6137 5984 22 35 0 0 chr11 4991191 4991220 -143792252 + AT_rich Low_complexity Low_complexity 1 29 0 328 353 107 0 chr11 4991243 4991430 -143792042 - MIR SINE MIR -55 207 1 382 335 110 40 chr11 4991836 4992389 -143791083 - L2 LINE L2 -540 2774 2183 226 294 71 53 chr11 4992775 4992945 -143790527 + L2 LINE L2 1868 2040 -1274 363 380 89 17 chr11 4993566 4994082 -143789390 - L2 LINE L2 -1618 1696 1144 395 224 174 12 chr11 4997212 4997373 -143786099 + MLT1J LTR MaLR 283 469 -42 711 183 57 22 chr11 4998275 4998505 -143784967 + L1M4 LINE L1 2789 3026 -3120 2478 283 44 37 chr11 4998617 4999529 -143783943 + L1PA15 LINE L1 1 918 -5869 7238 242 28 5 chr11 4999537 5002572 -143780900 + L1PA15 LINE L1 1277 4396 -2401 6473 212 11 3 chr11 5002992 5005366 -143778106 + L1PA15 LINE L1 4431 6812 -4 470 233 39 22 chr11 5005369 5005601 -143777871 + L1M4 LINE L1 3140 3375 -2771 310 269 0 58 chr11 5005705 5005809 -143777663 + CT-rich Low_complexity Low_complexity 3 100 0 2786 143 9 2 chr11 5005909 5006371 -143777101 + MER75 DNA T2_type 14 478 -36 2031 126 23 0 chr11 5006883 5007184 -143776288 + AluSq SINE Alu 1 308 -5 258 344 80 16 chr11 5007806 5007931 -143775541 + L3 LINE CR1 1434 1566 -11 232 362 43 29 chr11 5008217 5008355 -143775117 - L2 LINE L2 -2667 647 508 4422 171 24 45 chr11 5008511 5010231 -143773241 - L1MA8 LINE L1 -17 7693 6019 9658 58 7 110 chr11 5010231 5011774 -143771698 + SVA Other Other 4 1386 0 4422 171 24 45 chr11 5011774 5011835 -143771637 - L1MA8 LINE L1 -1691 6019 5958 * 4828 200 36 15 chr11 5011831 5012529 -143770943 - L1MA8 LINE L1 -1923 5642 4905 2621 22 0 38 chr11 5012529 5012843 -143770629 - AluYb8 SINE Alu -7 311 10 4828 200 36 15 chr11 5012843 5013374 -143770098 - L1MA8 LINE L1 -2660 4905 4387 2564 234 16 61 chr11 5013370 5014448 -143769024 - L1MA8 LINE L1 -4594 2971 2008 * 1312 229 32 12 chr11 5014649 5015063 -143768409 - L1MA8 LINE L1 -6685 804 84 184 388 17 17 chr11 5015756 5015872 -143767600 - L2 LINE L2 -184 3088 2973 1845 158 0 34 chr11 5016103 5016426 -143767046 + AluJb SINE Alu 1 312 0 351 0 0 0 chr11 5016908 5016947 -143766525 + (CA)n Simple_repeat Simple_repeat 2 40 0 322 342 146 45 chr11 5019385 5020051 -143763421 + L2 LINE L2 2026 2758 -556 195 287 20 99 chr11 5020086 5020187 -143763285 + L2 LINE L2 3145 3237 -35 287 115 39 0 chr11 5020206 5020258 -143763214 + GA-rich Low_complexity Low_complexity 3 56 0 180 318 47 9 chr11 5020264 5020371 -143763101 + L2 LINE L2 2798 2908 -406 184 337 54 43 chr11 5020717 5020809 -143762663 - L2 LINE L2 -166 3106 3014 494 337 168 28 chr11 5021072 5021917 -143761555 - L2 LINE L2 -553 2761 1799 287 374 133 29 chr11 5023136 5023550 -143759922 + L3 LINE CR1 935 1391 -186 21 0 0 0 chr11 5024248 5024269 -143759203 + AT_rich Low_complexity Low_complexity 1 21 0 554 250 47 26 chr11 5024570 5024762 -143758710 + MLT1J LTR MaLR 316 511 0 293 369 108 0 chr11 5024998 5025212 -143758260 - L2 LINE L2 -654 2660 2424 339 340 46 92 chr11 5025242 5025548 -143757924 - L2 LINE L2 -2042 1272 981 5288 128 16 16 chr11 5025824 5026871 -143756601 + L1PA15 LINE L1 5119 6165 0 480 280 25 30 chr11 5027088 5027288 -143756184 - L1PA12 LINE L1 -5198 2383 2185 1318 313 19 30 chr11 5027745 5028339 -143755133 - L1PA12 LINE L1 -6200 1374 788 192 152 0 0 chr11 5028538 5028571 -143754901 + T-rich Low_complexity Low_complexity 1 33 0 1409 227 35 28 chr11 5028575 5029362 -143754110 + L1ME LINE L1 4866 5662 -504 6180 30 0 0 chr11 5029417 5030178 -143753294 - L1PA4 LINE L1 0 6155 5395 3442 25 0 9 chr11 5030177 5030626 -143752846 + L1PA4 LINE L1 4953 5397 -749 * 355 270 40 69 chr11 5030631 5030957 -143752515 - L1M4 LINE L1 -1037 5109 4797 8750 121 8 7 chr11 5030960 5032246 -143751226 + HSMAR1 DNA Mariner 1 1287 0 15841 179 19 9 chr11 5032247 5036499 -143746973 - L1PA14 LINE L1 -1 6160 1890 7508 137 4 2 chr11 5036686 5037985 -143745487 + L1P LINE L1 2786 4086 -2060 664 80 44 0 chr11 5037981 5038043 -143745429 + L1PA2 LINE L1 5319 5377 -797 * 17200 30 1 0 chr11 5038043 5039457 -143744015 + L1PA2 LINE L1 3305 4716 -1439 2825 7 0 0 chr11 5039457 5039764 -143743708 + AluYb8 SINE Alu 1 307 -11 17200 30 1 0 chr11 5039764 5041211 -143742261 + L1PA2 LINE L1 4716 6155 0 664 80 44 0 chr11 5041211 5041261 -143742211 + L1PA2 LINE L1 5377 5436 -738 290 342 0 9 chr11 5041569 5041680 -143741792 - ERVL LTR ERVL -664 5100 4991 366 324 106 32 chr11 5042508 5042943 -143740529 - L2 LINE L2 -1277 2037 1571 407 311 52 46 chr11 5043630 5043958 -143739514 + L1M4 LINE L1 4028 4357 -1789 329 326 0 0 chr11 5044369 5044458 -143739014 - L2 LINE L2 -16 3297 3209 5879 223 37 23 chr11 5044514 5048599 -143734873 + L1PBa LINE L1 3 3194 -3668 270 208 75 50 chr11 5048641 5048761 -143734711 + L1MA9 LINE L1 6150 6272 -40 432 55 0 0 chr11 5048778 5048833 -143734639 + (CA)n Simple_repeat Simple_repeat 2 56 0 742 314 147 0 chr11 5048847 5049166 -143734306 - LTR33 LTR ERVL -153 368 3 21 0 0 0 chr11 5050714 5050735 -143732737 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr11 5050846 5050870 -143732602 + AT_rich Low_complexity Low_complexity 1 24 0 33 0 0 0 chr11 5050991 5051024 -143732448 + AT_rich Low_complexity Low_complexity 1 33 0 2030 103 9 59 chr11 5051061 5051382 -143732090 + AluSc SINE Alu 1 305 -4 2048 138 13 3 chr11 5051469 5051767 -143731705 + AluJb SINE Alu 1 301 -11 742 89 45 0 chr11 5053141 5053253 -143730219 - L1PB1 LINE L1 -6 6145 6029 37 23 0 0 chr11 5053439 5053483 -143729989 + AT_rich Low_complexity Low_complexity 1 44 0 313 289 63 11 chr11 5053631 5053821 -143729651 + L1ME LINE L1 5556 5755 -366 4994 112 29 115 chr11 5054008 5054114 -143729358 + L1MA4 LINE L1 5211 5324 -976 2013 80 109 0 chr11 5054114 5054388 -143729084 + AluY SINE Alu 1 304 -7 4994 112 29 115 chr11 5054388 5055101 -143728371 + L1MA4 LINE L1 5324 5901 -399 1979 60 0 0 chr11 5055101 5055333 -143728139 + AluSx SINE Alu 1 232 -80 4994 112 29 115 chr11 5055333 5055702 -143727770 + L1MA4 LINE L1 5901 6300 0 207 0 0 0 chr11 5055860 5055883 -143727589 + (TA)n Simple_repeat Simple_repeat 2 24 0 31 44 0 0 chr11 5056042 5056087 -143727385 + AT_rich Low_complexity Low_complexity 1 45 0 184 205 0 0 chr11 5056462 5056501 -143726971 - L2 LINE L2 -981 2333 2295 1944 172 3 0 chr11 5056646 5056949 -143726523 - AluSx SINE Alu -8 304 1 360 292 77 0 chr11 5058230 5058425 -143725047 + L1ME LINE L1 5520 5729 -392 22 70 0 0 chr11 5058480 5058523 -143724949 + AT_rich Low_complexity Low_complexity 1 43 0 674 305 14 9 chr11 5058573 5058796 -143724676 - MIR SINE MIR -2 260 37 217 276 26 97 chr11 5058824 5058981 -143724491 + MIR SINE MIR 58 202 -60 180 294 119 55 chr11 5059120 5059229 -143724243 + L2 LINE L2 3175 3290 -23 228 285 106 80 chr11 5059746 5059897 -143723575 - MIR SINE MIR -71 191 37 243 88 0 0 chr11 5059963 5059997 -143723475 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1276 255 96 43 chr11 5060783 5061365 -143722107 + MLT1G LTR MaLR 17 590 0 1214 227 148 43 chr11 5061560 5062027 -143721445 - LTR41 LTR ERVL -1 772 257 674 309 114 32 chr11 5062083 5062584 -143720888 + L1M4 LINE L1 8 549 -5993 950 185 50 37 chr11 5062591 5062889 -143720583 + L1M4 LINE L1 1029 1330 -5212 410 212 51 0 chr11 5062903 5063021 -143720451 + L1M4 LINE L1 1627 1750 -4896 1135 236 19 33 chr11 5063030 5063390 -143720082 + L1M4 LINE L1 1706 2060 -4586 309 214 71 8 chr11 5063408 5063534 -143719938 + L1M4 LINE L1 2242 2375 -4271 358 227 0 0 chr11 5063535 5063601 -143719871 - MER2 DNA MER2_type 0 345 280 648 208 66 9 chr11 5063647 5063891 -143719581 + L1M4 LINE L1 2567 2823 -3821 1277 214 18 25 chr11 5063927 5064203 -143719269 + Tigger7 DNA MER2_type 1 274 -459 383 224 0 47 chr11 5064203 5064288 -143719184 + Tigger7 DNA MER2_type 2395 2475 -12 713 204 28 21 chr11 5064294 5064633 -143718839 + L1M4 LINE L1 2828 3275 -3369 8399 215 18 31 chr11 5064633 5067604 -143715868 + L1P3 LINE L1 2 3083 -3378 3978 13 0 0 chr11 5067707 5068155 -143715317 + L1PA2 LINE L1 5698 6145 -10 709 295 85 9 chr11 5069240 5069464 -143714008 + MIR SINE MIR 9 249 -13 382 302 140 4 chr11 5069500 5069735 -143713737 + L1ME LINE L1 5027 5293 -853 680 276 19 31 chr11 5069880 5070137 -143713335 + L1ME LINE L1 5477 5730 -432 1530 202 3 40 chr11 5070741 5071112 -143712360 - MLT1A2 LTR MaLR -4 370 14 615 247 82 0 chr11 5073163 5073321 -143710151 + MIR SINE MIR 12 182 -80 303 259 62 0 chr11 5073514 5073595 -143709877 + L2 LINE L2 3147 3232 -40 1860 163 3 7 chr11 5073907 5074201 -143709271 - AluJo SINE Alu -19 293 1 266 324 0 0 chr11 5074473 5074547 -143708925 - L2 LINE L2 -11 3302 3229 195 258 161 39 chr11 5075458 5075613 -143707859 - MIR3 SINE MIR -21 187 14 450 94 47 0 chr11 5078564 5078628 -143704844 + AluJ/FRAM SINE Alu 221 287 -25 24 32 0 0 chr11 5078696 5078727 -143704745 + AT_rich Low_complexity Low_complexity 1 31 0 993 238 82 13 chr11 5079091 5079394 -143704078 + MER46C DNA MER2_type 2 325 -13 336 213 0 0 chr11 5079946 5080021 -143703451 - L1PB4 LINE L1 0 6156 6082 2250 116 3 0 chr11 5080154 5080457 -143703015 + AluSx SINE Alu 1 304 -8 274 284 9 17 chr11 5080549 5080665 -143702807 + L1M4 LINE L1 4491 4605 -1541 26 30 0 0 chr11 5080775 5080808 -143702664 + AT_rich Low_complexity Low_complexity 1 33 0 246 303 67 6 chr11 5081738 5081916 -143701556 + HAL1b LINE L1 433 621 -727 245 257 29 29 chr11 5083854 5083924 -143699548 + MIR SINE MIR 12 81 -127 799 238 72 25 chr11 5083969 5084201 -143699271 - MIR SINE MIR -31 231 2 2273 108 10 0 chr11 5084528 5084835 -143698637 + AluSx SINE Alu 1 310 -2 1958 138 3 3 chr11 5085383 5085707 -143697765 + AluSx SINE Alu 1 312 0 1986 91 14 11 chr11 5085791 5086066 -143697406 + AluSq SINE Alu 2 277 -36 879 71 58 0 chr11 5086066 5086221 -143697251 + GA-rich Low_complexity Low_complexity 2 165 0 285 300 22 0 chr11 5086409 5086499 -143696973 - L2 LINE L2 -1609 1705 1614 1247 155 18 10 chr11 5086645 5087067 -143696405 - LTR54 LTR ERV1 0 510 2 1720 239 68 42 chr11 5087068 5087320 -143696152 - LTR49-int LTR ERV1 -393 7144 6900 2327 138 23 0 chr11 5087320 5087674 -143695798 + THE1B LTR MaLR 1 362 -2 1720 239 68 42 chr11 5087674 5087939 -143695533 - LTR49-int LTR ERV1 -637 6900 6614 4396 229 52 62 chr11 5088032 5088240 -143695232 - LTR49-int LTR ERV1 -697 4174 3965 1648 214 0 14 chr11 5088240 5088535 -143694937 + AluJo SINE Alu 1 291 -21 4396 229 52 62 chr11 5088535 5090025 -143693447 - LTR49-int LTR ERV1 -906 3965 2493 393 261 82 31 chr11 5090028 5090360 -143693112 - LTR49-int LTR ERV1 -2129 4202 2455 2583 66 0 41 chr11 5090397 5090761 -143692711 + L1PA6 LINE L1 5805 6153 -1 2051 197 15 6 chr11 5090864 5091641 -143691831 + L1M2 LINE L1 4877 5660 -652 7458 161 31 27 chr11 5091642 5093184 -143690288 + L1M4c LINE L1 175 1722 -4662 1694 136 12 37 chr11 5093182 5093506 -143689966 + L1 LINE L1 3524 3839 -2307 * 1523 100 56 0 chr11 5093508 5093739 -143689733 + L1PA16 LINE L1 5915 6158 -8 24 0 0 0 chr11 5093749 5093773 -143689699 + AT_rich Low_complexity Low_complexity 1 24 0 1102 135 0 2 chr11 5094057 5094324 -143689148 + AluSx SINE Alu 1 311 -1 1191 234 80 13 chr11 5094324 5094854 -143688618 + L1M1 LINE L1 3530 4151 -3414 385 254 64 0 chr11 5094878 5094988 -143688484 + L1M1 LINE L1 4525 4641 -2924 24 0 0 0 chr11 5094994 5095018 -143688454 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr11 5095107 5095128 -143688344 + AT_rich Low_complexity Low_complexity 1 21 0 241 341 99 0 chr11 5095352 5095443 -143688029 - L2 LINE L2 -51 3221 3122 1885 160 10 3 chr11 5096216 5096509 -143686963 - AluSx SINE Alu -17 295 1 371 273 87 17 chr11 5097278 5097486 -143685986 - MLT1I LTR MaLR -123 327 93 40466 35 24 1 chr11 5097920 5103717 -143679755 + L1PA3 LINE L1 13 5942 -213 291 306 162 20 chr11 5103874 5104171 -143679301 + MLT1J2 LTR MaLR 67 405 -45 544 269 7 13 chr11 5104217 5104366 -143679106 - L2 LINE L2 -967 2347 2200 2276 119 3 0 chr11 5104602 5104912 -143678560 - AluSx SINE Alu -1 311 1 1897 152 0 30 chr11 5105025 5105322 -143678150 - AluSx SINE Alu -14 298 11 429 328 83 23 chr11 5105550 5105795 -143677677 - MIR SINE MIR 0 262 8 280 335 68 58 chr11 5107010 5107303 -143676169 + L2 LINE L2 2535 2830 -484 232 313 167 30 chr11 5107505 5107703 -143675769 + MIR SINE MIR 35 259 -3 330 312 25 33 chr11 5107709 5107956 -143675516 + L1M3 LINE L1 4793 5039 -1107 247 254 54 23 chr11 5108194 5108324 -143675148 + L1M3 LINE L1 5314 5447 -724 259 319 48 18 chr11 5108366 5108532 -143674940 + L1ME LINE L1 5530 5700 -421 2049 129 4 0 chr11 5108643 5108969 -143674503 - AluSx SINE Alu 0 329 3 808 194 37 42 chr11 5109223 5109439 -143674033 - MER96B DNA MER1_type? -1 416 202 38 66 0 28 chr11 5109471 5109577 -143673895 + AT_rich Low_complexity Low_complexity 1 103 0 281 317 110 0 chr11 5110419 5110501 -143672971 - L2 LINE L2 -36 3236 3146 615 290 60 10 chr11 5110603 5110803 -143672669 + MIR SINE MIR 50 259 -3 9354 161 117 17 chr11 5110803 5112585 -143670887 + L1MA3 LINE L1 13 1972 -5593 648 116 24 109 chr11 5112614 5112693 -143670779 - MER41A-int LTR ERV1 -3691 2255 2171 2171 115 0 13 chr11 5112693 5112997 -143670475 - AluSx SINE Alu -12 300 1 648 116 24 109 chr11 5112997 5113113 -143670359 - MER41A-int LTR ERV1 -3775 2171 1740 * 714 111 133 7 chr11 5113109 5113244 -143670228 - MER41A-int LTR ERV1 -3929 2017 1866 * 1932 175 59 10 chr11 5113243 5113631 -143669841 - MER41A-int LTR ERV1 -5166 2371 1965 * 4754 136 53 30 chr11 5113630 5114837 -143668635 - MER41A-int LTR ERV1 -4627 1319 1 277 104 338 13 chr11 5114846 5114923 -143668549 - MER41A-int LTR ERV1 -5844 102 1 4193 70 3 26 chr11 5115007 5115574 -143667898 - MER41A LTR ERV1 0 554 1 1258 128 68 16 chr11 5115574 5115823 -143667649 + L1MA3 LINE L1 2828 3089 -4476 1612 160 36 14 chr11 5115832 5116169 -143667303 - MER4A LTR ERV1 -1 663 261 501 163 10 10 chr11 5116169 5116267 -143667205 - MER4A LTR ERV1 -566 98 1 14205 150 39 18 chr11 5116269 5116501 -143666971 + L1MA3 LINE L1 3096 3322 -4401 2150 116 0 3 chr11 5116501 5116821 -143666651 - AluSx SINE Alu 0 319 1 14205 150 39 18 chr11 5116821 5120967 -143662505 + L1MA3 LINE L1 3322 7571 -152 1965 147 7 3 chr11 5120967 5121267 -143662205 + AluSx SINE Alu 1 301 -11 14205 150 39 18 chr11 5121267 5121312 -143662160 + L1MA3 LINE L1 7571 7614 -109 24 0 0 0 chr11 5121312 5121336 -143662136 + AT_rich Low_complexity Low_complexity 1 24 0 415 343 32 32 chr11 5122010 5122226 -143661246 - MIR SINE MIR -28 234 19 276 372 16 0 chr11 5122396 5122517 -143660955 - L2 LINE L2 -995 2319 2197 294 291 45 18 chr11 5122904 5123014 -143660458 - L2 LINE L2 -33 3280 3168 21 0 0 0 chr11 5123298 5123319 -143660153 + AT_rich Low_complexity Low_complexity 1 21 0 210 330 0 11 chr11 5123471 5123559 -143659913 + GA-rich Low_complexity Low_complexity 3 89 0 1807 143 3 18 chr11 5126038 5126324 -143657148 + AluJo SINE Alu 1 282 -30 235 293 93 7 chr11 5126329 5126469 -143657003 + L1MC4 LINE L1 6613 6764 -1278 500 239 35 0 chr11 5127113 5127226 -143656246 + MIR SINE MIR 32 148 -114 1408 6 0 0 chr11 5127229 5127385 -143656087 + L1HS LINE L1 6000 6155 0 189 94 0 0 chr11 5127387 5127419 -143656053 + (A)n Simple_repeat Simple_repeat 1 32 0 189 0 0 0 chr11 5127434 5127455 -143656017 + (A)n Simple_repeat Simple_repeat 1 21 0 24 32 0 0 chr11 5127880 5127911 -143655561 + AT_rich Low_complexity Low_complexity 1 31 0 5996 30 1 1 chr11 5127925 5128588 -143654884 + L1PA4 LINE L1 5474 6136 -19 882 271 18 5 chr11 5128900 5129118 -143654354 - MIR SINE MIR -1 261 41 2252 108 0 0 chr11 5129410 5129705 -143653767 + AluSg SINE Alu 2 296 -14 830 268 91 40 chr11 5129705 5130101 -143653371 - LTR33 LTR ERVL -59 462 47 374 238 133 9 chr11 5130140 5130245 -143653227 + L2 LINE L2 1121 1238 -2076 261 348 52 9 chr11 5130352 5130467 -143653005 - L2 LINE L2 -4 3309 3190 26 0 0 0 chr11 5130635 5130661 -143652811 + AT_rich Low_complexity Low_complexity 1 26 0 493 108 15 0 chr11 5130921 5130986 -143652486 + AluJ/FLAM SINE Alu 2 67 -245 836 112 0 0 chr11 5130988 5131104 -143652368 + AluSq SINE Alu 102 217 -96 820 169 0 0 chr11 5131371 5131525 -143651947 + L1HS LINE L1 6000 6153 -2 40 0 0 0 chr11 5131525 5131565 -143651907 + AT_rich Low_complexity Low_complexity 1 40 0 198 0 0 0 chr11 5131575 5131597 -143651875 + (A)n Simple_repeat Simple_repeat 1 22 0 190 260 91 0 chr11 5131597 5131674 -143651798 + MIR SINE MIR 137 220 -42 186 43 0 0 chr11 5131694 5131717 -143651755 + (CAT)n Simple_repeat Simple_repeat 2 24 0 1723 147 38 12 chr11 5132915 5133234 -143650238 - L1MA8 LINE L1 -4 6287 5961 234 167 0 0 chr11 5133458 5133518 -143649954 + A-rich Low_complexity Low_complexity 1 60 0 235 265 0 0 chr11 5133601 5133650 -143649822 + L2 LINE L2 3210 3258 -14 647 242 0 18 chr11 5134566 5134731 -143648741 - MIR SINE MIR 0 262 101 4220 173 18 31 chr11 5134945 5135762 -143647710 + L1MB3 LINE L1 5375 6181 -2 1581 219 39 8 chr11 5135909 5136342 -143647130 + L1ME2 LINE L1 5628 6086 -76 673 265 196 3 chr11 5136350 5136656 -143646816 + L1MD1 LINE L1 2034 2398 -4142 1928 141 7 10 chr11 5136660 5136964 -143646508 + MER1B DNA MER1_type 37 339 0 1192 217 38 9 chr11 5136964 5137506 -143645966 + L1MD1 LINE L1 2391 2943 -3597 9623 88 19 1 chr11 5137562 5138850 -143644622 + L1P LINE L1 11 1321 -4825 7948 36 0 2 chr11 5138850 5140371 -143643101 + L1PA5 LINE L1 4632 6150 -4 4232 230 83 15 chr11 5140424 5141755 -143641717 + L1MD1 LINE L1 3157 4578 -1962 2912 187 64 40 chr11 5141754 5141803 -143641669 + L1MD1 LINE L1 5928 5974 -662 * 2036 163 54 11 chr11 5141803 5142153 -143641319 - MLT1A1 LTR MaLR 0 365 1 2912 187 64 40 chr11 5142153 5142386 -143641086 + L1MD1 LINE L1 5974 6200 -436 2230 101 7 3 chr11 5142386 5142684 -143640788 + AluSq SINE Alu 1 299 -14 2912 187 64 40 chr11 5142684 5143083 -143640389 + L1MD1 LINE L1 6200 6627 -9 1934 191 55 0 chr11 5143103 5143433 -143640039 + MER7A DNA MER2_type 1 346 0 182 255 78 0 chr11 5143501 5143552 -143639920 + L2 LINE L2 3258 3312 -1 31 76 0 0 chr11 5143564 5143630 -143639842 + AT_rich Low_complexity Low_complexity 1 66 0 43264 38 26 2 chr11 5143761 5149013 -143634459 + L1P LINE L1 5 5382 -764 213 247 136 25 chr11 5151182 5151263 -143632209 + L2 LINE L2 2969 3058 -214 274 106 0 21 chr11 5151391 5151438 -143632034 + MIR SINE MIR 217 262 0 203 133 0 0 chr11 5151854 5151884 -143631588 + (TG)n Simple_repeat Simple_repeat 2 31 0 2199 126 35 20 chr11 5152024 5152366 -143631106 + MER7A DNA MER2_type 1 345 -1 931 180 22 28 chr11 5152397 5152575 -143630897 - MER5B DNA MER1_type 0 178 2 454 287 61 29 chr11 5153287 5153507 -143629965 - MIR SINE MIR 0 262 38 382 184 0 26 chr11 5153990 5154066 -143629406 + L1PB4 LINE L1 6083 6156 0 1974 144 3 3 chr11 5154537 5154835 -143628637 - AluSx SINE Alu -14 298 1 407 271 53 33 chr11 5154845 5154996 -143628476 - MIR SINE MIR -43 219 66 1987 128 0 0 chr11 5155057 5155339 -143628133 + AluSx SINE Alu 5 286 -26 32 0 0 0 chr11 5155339 5155371 -143628101 + AT_rich Low_complexity Low_complexity 1 32 0 3839 48 119 8 chr11 5155811 5156313 -143627159 + LTR6B LTR ERV1 1 558 0 473 310 39 0 chr11 5156365 5156520 -143626952 - L2 LINE L2 -312 3001 2841 542 167 0 0 chr11 5156522 5156600 -143626872 + AluS SINE Alu 2 79 -233 1256 348 67 33 chr11 5156765 5157492 -143625980 + L2 LINE L2 1947 2698 -616 345 47 0 0 chr11 5157766 5157809 -143625663 + (TG)n Simple_repeat Simple_repeat 2 44 0 32 0 0 0 chr11 5157809 5157841 -143625631 + AT_rich Low_complexity Low_complexity 1 32 0 504 263 89 93 chr11 5157891 5158138 -143625334 + L2 LINE L2 3027 3272 0 211 318 196 8 chr11 5158263 5158508 -143624964 + L2 LINE L2 2940 3230 -42 2051 136 3 3 chr11 5159214 5159508 -143623964 + AluSx SINE Alu 19 312 0 1752 194 115 3 chr11 5159746 5160102 -143623370 + MSTD LTR MaLR 1 396 0 223 244 0 0 chr11 5160411 5160456 -143623016 + G-rich Low_complexity Low_complexity 2 46 0 2215 128 0 10 chr11 5161141 5161454 -143622018 - AluSx SINE Alu -2 310 1 2298 30 0 0 chr11 5161683 5161948 -143621524 - AluY SINE Alu -46 265 1 225 132 0 0 chr11 5162134 5162172 -143621300 + (CTTTG)n Simple_repeat Simple_repeat 2 39 0 417 158 142 17 chr11 5162527 5162647 -143620825 + LTR37A LTR ERV1 13 147 -279 466 88 38 0 chr11 5164292 5164372 -143619100 + CT-rich Low_complexity Low_complexity 2 84 0 648 229 24 24 chr11 5165033 5165199 -143618273 + MER31-int LTR ERV1 3817 3982 -954 757 152 0 0 chr11 5165199 5165304 -143618168 + AluSq/x SINE Alu 2 106 -207 867 223 48 65 chr11 5165323 5165615 -143617857 + MER31-int LTR ERV1 3973 4259 -677 1686 201 84 15 chr11 5165615 5166009 -143617463 + LTR37A LTR ERV1 4 424 -2 1887 92 0 8 chr11 5167728 5167977 -143615495 - AluSq SINE Alu -66 247 1 401 283 8 17 chr11 5168307 5168427 -143615045 + L2 LINE L2 2587 2705 -609 253 255 28 78 chr11 5168469 5168610 -143614862 + L1MEd LINE L1 88 221 -5984 658 236 112 43 chr11 5168789 5169042 -143614430 + MLT1E LTR MaLR 54 319 -248 3831 86 67 8 chr11 5169063 5169586 -143613886 + MER41A LTR ERV1 1 554 0 4940 124 46 10 chr11 5169586 5170481 -143612991 + MER41A-int LTR ERV1 1 1481 -5241 1118 126 0 6 chr11 5170463 5170630 -143612842 + MER41A-int LTR ERV1 929 1094 -4852 * 306 0 0 0 chr11 5170633 5170667 -143612805 + (TG)n Simple_repeat Simple_repeat 1 34 0 12460 101 28 28 chr11 5170667 5173618 -143609854 + MER41A-int LTR ERV1 1360 5942 -4 4339 81 0 4 chr11 5173620 5174176 -143609296 + MER41A LTR ERV1 1 554 0 248 272 64 0 chr11 5174178 5174303 -143609169 + L1MEd LINE L1 1363 1495 -4901 310 282 0 0 chr11 5174332 5174402 -143609070 - MER5A DNA MER1_type -80 105 29 649 140 0 10 chr11 5175311 5175411 -143608061 - MER4A LTR ERV1 -564 100 2 224 274 181 61 chr11 5175411 5175754 -143607718 + L2 LINE L2 2918 3301 -12 551 312 132 0 chr11 5175872 5176077 -143607395 + MIR SINE MIR 31 262 0 309 169 0 99 chr11 5176179 5176250 -143607222 - L1MC4 LINE L1 -1339 6703 6640 * 315 203 99 2 chr11 5176246 5176333 -143607139 + L1M LINE L1 5266 5346 -828 397 246 205 0 chr11 5177138 5177260 -143606212 + MER5A DNA MER1_type 43 189 0 305 243 27 14 chr11 5177994 5178068 -143605404 + MIR SINE MIR 2 76 -186 12386 141 42 28 chr11 5178080 5178683 -143604789 - L1MA3 LINE L1 0 6305 5712 2318 84 7 0 chr11 5178683 5178993 -143604479 - AluSx SINE Alu 0 312 1 12386 141 42 28 chr11 5178993 5181227 -143602245 - L1MA3 LINE L1 -593 5712 3413 2308 102 0 0 chr11 5181227 5181540 -143601932 - AluSp SINE Alu 0 313 1 12386 141 42 28 chr11 5181540 5182165 -143601307 - L1MA3 LINE L1 -2892 3413 2798 442 298 88 18 chr11 5182363 5182534 -143600938 - MIR SINE MIR -27 235 53 358 378 82 0 chr11 5182549 5182745 -143600727 + MIR SINE MIR 2 213 -49 787 181 11 80 chr11 5183497 5183685 -143599787 + MER69A DNA AcHobo 2 176 -1 338 208 0 52 chr11 5183751 5183828 -143599644 + MIR SINE MIR 74 146 -62 323 325 138 8 chr11 5187217 5187463 -143596009 + L2 LINE L2 1727 2004 -1310 397 249 112 81 chr11 5187933 5188130 -143595342 - L2 LINE L2 0 3272 3070 1536 165 38 48 chr11 5188435 5188514 -143594958 + Tigger3(Golem) DNA MER2_type 1 79 -1152 1750 177 3 10 chr11 5188514 5188824 -143594648 + AluJo SINE Alu 1 308 -4 1536 165 38 48 chr11 5188824 5189035 -143594437 + Tigger3(Golem) DNA MER2_type 79 288 -943 251 264 27 55 chr11 5189199 5189290 -143594182 - MIR SINE MIR -109 99 16 2185 100 10 0 chr11 5189344 5189653 -143593819 - AluSp SINE Alu -1 312 1 496 342 25 20 chr11 5189685 5189884 -143593588 + L2 LINE L2 3069 3268 -4 1839 121 78 14 chr11 5190735 5191081 -143592391 + L1MC2 LINE L1 5977 6344 0 183 80 0 0 chr11 5191111 5191136 -143592336 + (TG)n Simple_repeat Simple_repeat 2 26 0 1733 168 7 7 chr11 5192089 5192386 -143591086 + AluJb SINE Alu 1 297 -15 237 278 24 32 chr11 5192863 5192989 -143590483 + C-rich Low_complexity Low_complexity 3 127 0 375 23 0 0 chr11 5193153 5193197 -143590275 + (GA)n Simple_repeat Simple_repeat 1 44 0 1849 284 2 2 chr11 5194781 5195200 -143588272 + LTR16A LTR ERVL 24 442 -8 311 374 168 3 chr11 5195204 5195514 -143587958 + L2 LINE L2 2482 2842 -472 288 154 0 0 chr11 5195601 5195653 -143587819 + T-rich Low_complexity Low_complexity 1 52 0 258 305 102 17 chr11 5195675 5195793 -143587679 + L2 LINE L2 2931 3058 -214 1497 214 123 106 chr11 5195801 5196441 -143587031 + MLT1E2 LTR MaLR 4 626 0 498 267 58 49 chr11 5196539 5196764 -143586708 - L2 LINE L2 -645 2669 2443 650 237 38 38 chr11 5196799 5197010 -143586462 - MIR SINE MIR -44 218 8 233 304 82 38 chr11 5197028 5197129 -143586343 + L2 LINE L2 1266 1361 -1953 267 54 0 0 chr11 5197129 5197166 -143586306 + (CA)n Simple_repeat Simple_repeat 2 38 0 233 304 82 38 chr11 5197166 5197248 -143586224 + L2 LINE L2 1361 1457 -1857 912 291 188 9 chr11 5197248 5197816 -143585656 - L2 LINE L2 -956 2358 1689 308 82 0 20 chr11 5197826 5197875 -143585597 + (TTTC)n Simple_repeat Simple_repeat 2 49 0 218 368 69 10 chr11 5197877 5198081 -143585391 - L2 LINE L2 -1637 1677 1462 669 294 117 35 chr11 5198082 5198477 -143584995 + MLT1J LTR MaLR 85 511 0 344 348 176 27 chr11 5198484 5198560 -143584912 - L2 LINE L2 -1855 1459 1396 207 69 0 0 chr11 5198560 5198589 -143584883 + (TG)n Simple_repeat Simple_repeat 1 29 0 344 348 176 27 chr11 5198589 5198848 -143584624 - L2 LINE L2 -1918 1396 1074 1135 162 65 148 chr11 5198926 5199278 -143584194 + MLT1B LTR MaLR 68 390 0 213 189 57 38 chr11 5199874 5199927 -143583545 - MER5A DNA MER1_type -78 111 58 2625 17 0 0 chr11 5201703 5202003 -143581469 - AluYa5 SINE Alu -11 300 1 463 250 159 6 chr11 5202794 5202970 -143580502 + MIR SINE MIR 47 249 -13 319 220 28 73 chr11 5202991 5203028 -143580444 + MIR SINE MIR 109 146 -116 188 86 29 0 chr11 5203028 5203063 -143580409 + (CAT)n Simple_repeat Simple_repeat 1 36 0 319 220 28 73 chr11 5203063 5203134 -143580338 + MIR SINE MIR 146 212 -50 4067 71 28 33 chr11 5203244 5203604 -143579868 - L1PB2 LINE L1 -5 6146 5789 2019 137 0 3 chr11 5203604 5203917 -143579555 - AluSx SINE Alu 0 312 1 4067 71 28 33 chr11 5203917 5204135 -143579337 - L1PB2 LINE L1 -362 5789 5571 1309 209 65 69 chr11 5204523 5205001 -143578471 + MLT1E2 LTR MaLR 105 606 -20 273 29 0 0 chr11 5205001 5205035 -143578437 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1309 209 65 69 chr11 5205035 5205056 -143578416 + MLT1E2 LTR MaLR 606 626 0 1138 193 0 5 chr11 5205226 5205428 -143578044 + AluJb SINE Alu 1 201 -111 2104 86 17 0 chr11 5205534 5205825 -143577647 - AluY SINE Alu -15 296 1 346 292 77 15 chr11 5206588 5206718 -143576754 - L2 LINE L2 -10 3303 3166 405 0 0 0 chr11 5207962 5208007 -143575465 + (TG)n Simple_repeat Simple_repeat 2 46 0 2287 158 70 2 chr11 5209002 5209402 -143574070 + MSTA LTR MaLR 2 428 0 284 383 101 15 chr11 5209446 5209772 -143573700 - L2 LINE L2 -337 2977 2624 599 296 40 6 chr11 5209792 5209968 -143573504 - MIR SINE MIR -6 256 75 814 233 33 6 chr11 5210331 5210511 -143572961 + MIR SINE MIR 78 262 0 213 351 13 0 chr11 5213826 5213903 -143569569 - L2 LINE L2 0 3272 3195 550 339 60 45 chr11 5214257 5214790 -143568682 - L2 LINE L2 -35 3237 2702 302 358 61 14 chr11 5215136 5215284 -143568188 + L2 LINE L2 2252 2406 -908 1564 209 126 26 chr11 5215400 5215830 -143567642 + MLT1G LTR MaLR 118 590 0 1106 188 27 5 chr11 5215830 5216053 -143567419 - L1ME3A LINE L1 -23 6147 5920 285 360 96 13 chr11 5216064 5216453 -143567019 + L2 LINE L2 2461 2966 -348 750 179 31 0 chr11 5216462 5216624 -143566848 - L1MD3 LINE L1 0 7995 7829 2481 65 0 0 chr11 5216624 5216934 -143566538 - AluSg SINE Alu 0 310 1 219 411 65 0 chr11 5216959 5217083 -143566389 + L2 LINE L2 2952 3083 -189 22 70 0 0 chr11 5217912 5217955 -143565517 + GC_rich Low_complexity Low_complexity 1 43 0 184 239 0 43 chr11 5218584 5218630 -143564842 - L2 LINE L2 -95 3218 3175 362 269 30 2 chr11 5219010 5219128 -143564344 - L1ME1 LINE L1 -44 6122 5992 24 0 0 0 chr11 5219773 5219797 -143563675 + AT_rich Low_complexity Low_complexity 1 24 0 194 231 292 11 chr11 5219983 5220075 -143563397 - MIR SINE MIR -61 147 30 244 274 0 0 chr11 5220532 5220583 -143562889 - L2 LINE L2 -15 3257 3207 258 255 74 47 chr11 5220595 5220744 -143562728 - L2 LINE L2 -1 3312 3160 1455 154 36 121 chr11 5220791 5221121 -143562351 + AluSx SINE Alu 1 302 0 338 335 182 36 chr11 5221130 5221850 -143561622 + L2 LINE L2 2210 3035 -237 510 261 60 22 chr11 5223292 5223426 -143560046 - MIR SINE MIR -123 139 1 626 217 43 14 chr11 5223508 5223646 -143559826 - LTR33 LTR ERVL -4 517 376 2179 98 3 10 chr11 5224232 5224528 -143558944 - AluSp SINE Alu -19 294 1 676 348 65 19 chr11 5224644 5225121 -143558351 + L2 LINE L2 1931 2429 -885 698 249 105 5 chr11 5225212 5225421 -143558051 + MIR SINE MIR 32 261 -1 211 357 101 40 chr11 5225665 5226250 -143557222 + L2 LINE L2 2608 3232 -40 207 100 0 0 chr11 5226935 5226965 -143556507 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 913 259 250 26 chr11 5226974 5227842 -143555630 - L2 LINE L2 0 3313 2245 24 32 0 0 chr11 5229301 5229332 -143554140 + AT_rich Low_complexity Low_complexity 1 31 0 889 286 186 12 chr11 5230635 5231100 -143552372 - L2 LINE L2 -2 3311 2770 255 294 64 97 chr11 5231445 5231634 -143551838 + MER5A DNA MER1_type 1 189 0 877 261 111 59 chr11 5232096 5232572 -143550900 - MLT1E2 LTR MaLR 0 626 5 227 263 0 38 chr11 5234805 5234885 -143548587 + G-rich Low_complexity Low_complexity 6 82 0 560 249 159 5 chr11 5237246 5237435 -143546037 - MIR SINE MIR -17 245 28 257 293 13 0 chr11 5238453 5238528 -143544944 - L2 LINE L2 -228 3044 2969 261 0 0 0 chr11 5238530 5238559 -143544913 + (T)n Simple_repeat Simple_repeat 1 29 0 268 388 50 16 chr11 5238972 5239093 -143544379 - L2 LINE L2 -5 3267 3143 220 280 105 21 chr11 5243267 5243410 -143540062 - L2 LINE L2 -463 2851 2697 198 0 0 0 chr11 5243414 5243436 -143540036 + (T)n Simple_repeat Simple_repeat 1 22 0 10560 25 15 1 chr11 5293502 5294764 -143488708 + L1P LINE L1 3529 4808 -1338 1031 113 11 13 chr11 5294868 5296343 -143487129 + HSATII Satellite Satellite 1 1471 -1 785 100 0 21 chr11 5296366 5296506 -143486966 + HSATII Satellite Satellite 17 153 -17 911 121 23 14 chr11 5296522 5297010 -143486462 + HSATII Satellite Satellite 1 492 0 980 112 10 12 chr11 5297033 5298238 -143485234 + HSATII Satellite Satellite 1 1202 -27 998 108 8 14 chr11 5298265 5300399 -143483073 + HSATII Satellite Satellite 1 2120 -16 965 129 22 9 chr11 5300414 5300703 -143482769 + HSATII Satellite Satellite 1 292 -1 926 123 10 16 chr11 5300726 5302167 -143481305 + HSATII Satellite Satellite 1 1432 -1 1064 110 11 12 chr11 5302197 5306731 -143476741 + HSATII Satellite Satellite 1 4528 -23 941 120 15 14 chr11 5306746 5307377 -143476095 + HSATII Satellite Satellite 1 631 -137 935 113 6 12 chr11 5307390 5307884 -143475588 + HSATII Satellite Satellite 1 491 -99 977 99 9 16 chr11 5307913 5308487 -143474985 + HSATII Satellite Satellite 1 570 -16 998 104 8 18 chr11 5308525 5309023 -143474449 + HSATII Satellite Satellite 1 493 -23 974 132 12 13 chr11 5309038 5309489 -143473983 + HSATII Satellite Satellite 1 450 -1 959 110 13 12 chr11 5309519 5311271 -143472201 + HSATII Satellite Satellite 1 1754 -17 818 111 21 0 chr11 5311287 5311431 -143472041 + HSATII Satellite Satellite 1 147 -23 965 113 9 13 chr11 5311446 5311899 -143471573 + HSATII Satellite Satellite 1 451 -23 953 125 16 17 chr11 5311921 5313127 -143470345 + HSATII Satellite Satellite 1 1204 -1 998 110 17 12 chr11 5313157 5314890 -143468582 + HSATII Satellite Satellite 1 1741 -4 779 136 4 18 chr11 5314917 5315197 -143468275 + HSATII Satellite Satellite 1 276 -86 941 125 7 18 chr11 5315356 5316181 -143467291 + HSATII Satellite Satellite 1 816 0 998 117 9 14 chr11 5316204 5317933 -143465539 + HSATII Satellite Satellite 1 1720 -1 998 122 12 16 chr11 5317952 5318871 -143464601 + HSATII Satellite Satellite 1 915 -2 1031 115 19 12 chr11 5318902 5320618 -143462854 + HSATII Satellite Satellite 1 1727 -1 980 105 12 12 chr11 5320648 5321927 -143461545 + HSATII Satellite Satellite 1 1279 -23 953 122 21 18 chr11 5321949 5323155 -143460317 + HSATII Satellite Satellite 1 1209 -1 980 113 13 12 chr11 5323185 5324878 -143458594 + HSATII Satellite Satellite 1 1694 -51 932 109 7 15 chr11 5324912 5325505 -143457967 + HSATII Satellite Satellite 1 588 -11 694 149 18 18 chr11 5325538 5325761 -143457711 + HSATII Satellite Satellite 1 223 -94 986 113 10 16 chr11 5325889 5327427 -143456045 + HSATII Satellite Satellite 1 1529 -9 781 129 18 18 chr11 5327458 5327628 -143455844 + HSATII Satellite Satellite 1 170 0 928 96 13 19 chr11 5327653 5327967 -143455505 + HSATII Satellite Satellite 1 312 -31 998 111 5 0 chr11 5327980 5328192 -143455280 + HSATII Satellite Satellite 1 213 -1 932 127 11 19 chr11 5328215 5328816 -143454656 + HSATII Satellite Satellite 1 596 -1 980 103 12 12 chr11 5328846 5330122 -143453350 + HSATII Satellite Satellite 1 1276 -26 965 137 14 19 chr11 5330147 5330592 -143452880 + HSATII Satellite Satellite 1 442 -1 982 114 12 12 chr11 5330622 5331906 -143451566 + HSATII Satellite Satellite 1 1285 -17 965 108 23 14 chr11 5331922 5332410 -143451062 + HSATII Satellite Satellite 1 492 0 944 121 9 15 chr11 5332433 5334016 -143449456 + HSATII Satellite Satellite 1 1573 -1 989 109 13 8 chr11 5334046 5335161 -143448311 + HSATII Satellite Satellite 1 1120 -8 965 103 7 19 chr11 5335172 5335793 -143447679 + HSATII Satellite Satellite 1 613 -23 932 143 14 19 chr11 5335815 5336260 -143447212 + HSATII Satellite Satellite 1 442 -1 1031 106 10 12 chr11 5336290 5339342 -143444130 + HSATII Satellite Satellite 1 3047 -23 980 117 10 16 chr11 5339355 5342425 -143441047 + HSATII Satellite Satellite 1 3051 -1 977 107 12 11 chr11 5342455 5344684 -143438788 + HSATII Satellite Satellite 1 2229 -27 980 112 14 13 chr11 5344700 5347466 -143436006 + HSATII Satellite Satellite 1 2766 0 965 119 9 17 chr11 5347497 5348333 -143435139 + HSATII Satellite Satellite 1 829 -1 998 114 13 14 chr11 5348363 5350724 -143432748 + HSATII Satellite Satellite 1 2358 0 980 98 6 14 chr11 5350844 5351491 -143431981 + HSATII Satellite Satellite 1 642 -26 977 121 11 16 chr11 5351516 5353737 -143429735 + HSATII Satellite Satellite 1 2210 -1 965 104 12 12 chr11 5353767 5355046 -143428426 + HSATII Satellite Satellite 1 1279 -23 932 117 18 20 chr11 5355068 5355803 -143427669 + HSATII Satellite Satellite 1 733 -1 887 140 9 20 chr11 5355829 5356274 -143427198 + HSATII Satellite Satellite 1 440 -1 980 107 12 12 chr11 5356304 5357580 -143425892 + HSATII Satellite Satellite 1 1276 -26 974 118 18 20 chr11 5357605 5358197 -143425275 + HSATII Satellite Satellite 1 590 0 1012 104 9 13 chr11 5358220 5359359 -143424113 + HSATII Satellite Satellite 1 1134 -23 1019 115 12 12 chr11 5359381 5361445 -143422027 + HSATII Satellite Satellite 1 2063 -1 1031 114 9 15 chr11 5361468 5367133 -143416339 + HSATII Satellite Satellite 1 5633 -23 998 115 11 16 chr11 5367148 5372006 -143411466 + HSATII Satellite Satellite 1 4833 -9 670 147 18 18 chr11 5372037 5372207 -143411265 + HSATII Satellite Satellite 1 170 0 907 123 12 13 chr11 5372232 5373394 -143410078 + HSATII Satellite Satellite 1 1161 -1 998 113 12 12 chr11 5373424 5377796 -143405676 + HSATII Satellite Satellite 1 4370 -8 1031 98 2 15 chr11 5377807 5378425 -143405047 + HSATII Satellite Satellite 1 610 -23 956 119 10 17 chr11 5378449 5379458 -143404014 + HSATII Satellite Satellite 1 1001 -19 980 111 11 11 chr11 5379477 5382317 -143401155 + HSATII Satellite Satellite 1 2840 -23 980 114 14 13 chr11 5382339 5384093 -143399379 + HSATII Satellite Satellite 1 1755 -23 1031 113 10 12 chr11 5384115 5389897 -143393575 + HSATII Satellite Satellite 1 5770 -15 998 118 13 14 chr11 5389911 5392851 -143390621 + HSATII Satellite Satellite 1 2936 -92 1805 93 12 157 chr11 5492872 5492918 -143290554 + MER4E LTR ERV1 421 472 -307 2126 108 7 3 chr11 5492918 5493213 -143290259 - AluSq SINE Alu -6 307 12 1805 93 12 157 chr11 5493213 5493586 -143289886 + MER4E LTR ERV1 472 779 0 3152 165 23 92 chr11 5493595 5493750 -143289722 + LTR8 LTR ERV1 2 166 -525 2235 78 32 7 chr11 5493750 5494031 -143289441 - AluSq SINE Alu -19 294 7 3152 165 23 92 chr11 5494031 5494616 -143288856 + LTR8 LTR ERV1 166 691 0 804 295 28 0 chr11 5494681 5494898 -143288574 + LTR16A LTR ERVL 215 437 -13 2645 59 0 0 chr11 5495032 5495338 -143288134 + AluY SINE Alu 1 306 -5 277 207 34 45 chr11 5495723 5495902 -143287570 + (GTGTG)n Simple_repeat Simple_repeat 4 180 0 330 139 0 0 chr11 5495902 5495974 -143287498 + (G)n Simple_repeat Simple_repeat 1 72 0 200 211 19 0 chr11 5495986 5496038 -143287434 + G-rich Low_complexity Low_complexity 4 56 0 204 40 0 0 chr11 5496052 5496077 -143287395 + (GGAA)n Simple_repeat Simple_repeat 4 28 0 2245 110 47 69 chr11 5496355 5496634 -143286838 + LTR23 LTR ERV1 1 285 -152 4664 103 24 88 chr11 5496634 5496986 -143286486 - MER4E LTR ERV1 0 779 406 2205 118 0 3 chr11 5496986 5497282 -143286190 + AluSc SINE Alu 1 295 -14 4664 103 24 88 chr11 5497282 5497510 -143285962 - MER4E LTR ERV1 -373 406 165 2320 91 6 16 chr11 5497510 5497828 -143285644 + AluYb8 SINE Alu 1 315 -3 4664 103 24 88 chr11 5497828 5497869 -143285603 - MER4E LTR ERV1 -614 165 123 270 0 0 0 chr11 5497869 5497899 -143285573 + (TA)n Simple_repeat Simple_repeat 2 31 0 4664 103 24 88 chr11 5497899 5498107 -143285365 - MER4E LTR ERV1 -656 123 1 2245 110 47 69 chr11 5498107 5498274 -143285198 + LTR23 LTR ERV1 285 437 0 977 79 0 7 chr11 5498432 5498571 -143284901 + MER4C LTR ERV1 1 138 -327 1397 92 0 5 chr11 5498573 5498757 -143284715 + AluSp SINE Alu 130 312 -1 1917 85 115 3 chr11 5498757 5499062 -143284410 + MER4C LTR ERV1 127 465 0 557 223 121 25 chr11 5499064 5499221 -143284251 + MIR SINE MIR 53 224 -38 946 191 126 65 chr11 5499223 5499605 -143283867 - LTR56 LTR ERV1 -21 424 20 180 0 0 0 chr11 5499607 5499627 -143283845 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 292 98 98 0 chr11 5499819 5499870 -143283602 + MIR SINE MIR 102 157 -105 744 176 53 18 chr11 5499872 5500042 -143283430 - LTR49 LTR ERV1 0 595 420 451 174 214 8 chr11 5500040 5500339 -143283133 - LTR29 LTR ERV1 -198 424 1 * 344 269 28 9 chr11 5500339 5500447 -143283025 + MIR SINE MIR 153 262 0 888 170 0 0 chr11 5502920 5503061 -143280411 - FLAM_C SINE Alu -2 141 1 2334 99 13 3 chr11 5503066 5503369 -143280103 - AluSc SINE Alu -3 306 1 695 227 133 10 chr11 5507219 5507422 -143276050 - MIR SINE MIR -20 242 15 289 347 137 16 chr11 5508131 5508379 -143275093 + L2 LINE L2 2951 3228 -44 684 294 38 13 chr11 5508759 5508994 -143274478 + L2 LINE L2 3073 3313 0 456 226 175 32 chr11 5509293 5509602 -143273870 - L1ME4a LINE L1 -2 6119 5767 2230 103 3 20 chr11 5509733 5510034 -143273438 - AluSq SINE Alu -9 304 9 4416 92 17 73 chr11 5510617 5511379 -143272093 - L1PB1 LINE L1 0 6151 5433 21 0 0 0 chr11 5511641 5511662 -143271810 + AT_rich Low_complexity Low_complexity 1 21 0 2052 148 17 0 chr11 5512718 5513015 -143270457 + AluSx SINE Alu 1 302 -10 1050 196 117 58 chr11 5513289 5513511 -143269961 - MLT1A1 LTR MaLR -3 362 112 2612 124 31 49 chr11 5513511 5513690 -143269782 + MER65A LTR ERV1 1 182 -263 2418 86 7 0 chr11 5513690 5513991 -143269481 + AluSp SINE Alu 1 303 -10 2612 124 31 49 chr11 5513991 5514264 -143269208 + MER65A LTR ERV1 182 445 0 1050 196 117 58 chr11 5514264 5514383 -143269089 - MLT1A1 LTR MaLR -253 112 1 1758 185 7 17 chr11 5515934 5516236 -143267236 - AluJo SINE Alu -13 299 1 357 221 40 185 chr11 5517082 5517307 -143266165 + L2 LINE L2 3058 3231 -82 1807 171 30 10 chr11 5517307 5517612 -143265860 - AluSx SINE Alu 0 312 2 357 221 40 185 chr11 5517612 5517684 -143265788 + L2 LINE L2 3231 3312 -1 344 277 84 0 chr11 5517707 5517826 -143265646 - MIR SINE MIR -15 247 119 193 333 42 0 chr11 5518036 5518108 -143265364 + L2 LINE L2 3192 3266 -6 1930 186 0 0 chr11 5518172 5518483 -143264989 - AluJb SINE Alu -1 311 1 275 300 70 20 chr11 5518537 5518637 -143264835 - L2 LINE L2 -26 3287 3183 516 309 24 63 chr11 5518704 5518956 -143264516 - L2 LINE L2 -357 2957 2716 306 154 39 0 chr11 5519198 5519250 -143264222 + L2 LINE L2 3255 3308 -5 195 69 0 0 chr11 5519535 5519564 -143263908 + (CAA)n Simple_repeat Simple_repeat 3 31 0 2179 119 0 3 chr11 5522311 5522621 -143260851 + AluSx SINE Alu 1 309 -3 2359 95 0 0 chr11 5523716 5524011 -143259461 - AluSg SINE Alu -14 296 2 2092 177 36 120 chr11 5524041 5524709 -143258763 - LTR9 LTR ERV1 0 612 1 1372 210 105 18 chr11 5525025 5525358 -143258114 - MER93b LTR ERV1 0 373 12 2250 114 3 0 chr11 5525407 5525704 -143257768 + AluSp SINE Alu 1 298 -15 1644 177 100 84 chr11 5525786 5526168 -143257304 + MLT1C LTR MaLR 8 400 -67 2054 130 0 17 chr11 5526168 5526460 -143257012 - AluSq SINE Alu -25 288 2 1644 177 100 84 chr11 5526460 5526528 -143256944 + MLT1C LTR MaLR 400 465 -2 253 333 9 9 chr11 5527549 5527657 -143255815 + ERVL LTR ERVL 3252 3359 -2405 1155 219 109 27 chr11 5528255 5528621 -143254851 - MSTD LTR MaLR 0 396 1 1351 251 92 14 chr11 5528621 5529043 -143254429 + MLT1C LTR MaLR 13 467 0 197 143 48 0 chr11 5530727 5530769 -143252703 + GA-rich Low_complexity Low_complexity 3 46 0 210 143 0 0 chr11 5530797 5530832 -143252640 + (GAAAA)n Simple_repeat Simple_repeat 5 39 0 1327 157 126 28 chr11 5531296 5531574 -143251898 - Charlie5 DNA MER1_type 0 2624 2302 2851 133 9 0 chr11 5531574 5532004 -143251468 - MER57B LTR ERV1 0 434 1 1327 157 126 28 chr11 5532004 5532081 -143251391 - Charlie5 DNA MER1_type -322 2302 2234 2241 125 3 0 chr11 5532296 5532607 -143250865 + AluSx SINE Alu 1 312 0 3008 222 15 15 chr11 5532906 5533558 -143249914 - MER82 DNA MER2_type 0 653 2 421 141 28 0 chr11 5533738 5533809 -143249663 + AluJ/FRAM SINE Alu 224 296 -16 180 125 0 0 chr11 5533847 5533879 -143249593 + (A)n Simple_repeat Simple_repeat 1 32 0 684 242 43 0 chr11 5533954 5534140 -143249332 - MIR SINE MIR -34 228 35 641 198 87 12 chr11 5534629 5534801 -143248671 + MER53 DNA DNA 5 189 0 25 0 0 0 chr11 5535277 5535302 -143248170 + AT_rich Low_complexity Low_complexity 1 25 0 202 234 0 96 chr11 5535407 5535501 -143247971 + MIR SINE MIR 48 132 -130 267 79 0 0 chr11 5535864 5535902 -143247570 + (TTGG)n Simple_repeat Simple_repeat 2 39 0 2004 144 3 0 chr11 5535905 5536190 -143247282 - AluJb SINE Alu -26 286 1 918 151 6 38 chr11 5536466 5536625 -143246847 - MER3 DNA MER1_type 0 209 56 2640 86 13 5 chr11 5536946 5537320 -143246152 - L1PA13 LINE L1 -2 6161 5785 657 25 0 0 chr11 5537747 5537826 -143245646 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 1345 191 67 21 chr11 5537925 5538207 -143245265 - AluJb SINE Alu -12 300 6 2337 98 3 0 chr11 5538249 5538546 -143244926 - AluSx SINE Alu -14 298 1 316 331 25 32 chr11 5538552 5538709 -143244763 - ERVL LTR ERVL -469 5295 5140 1849 173 31 45 chr11 5540066 5540692 -143242780 - LTR8 LTR ERV1 0 691 1 227 161 18 0 chr11 5540913 5540969 -143242503 + (TA)n Simple_repeat Simple_repeat 2 58 0 876 127 0 0 chr11 5540969 5541087 -143242385 - FLAM_C SINE Alu -19 124 7 2105 133 76 129 chr11 5541277 5541403 -143242069 + MER39B LTR ERV1 1 132 -521 2344 92 3 13 chr11 5541403 5541717 -143241755 + AluSx SINE Alu 1 311 -1 2105 133 76 129 chr11 5541717 5541741 -143241731 + MER39B LTR ERV1 132 156 -497 2201 116 10 0 chr11 5541741 5542044 -143241428 + AluSx SINE Alu 1 306 -6 2105 133 76 129 chr11 5542044 5542176 -143241296 + MER39B LTR ERV1 156 293 -360 1922 164 0 16 chr11 5542176 5542493 -143240979 + AluJo SINE Alu 1 312 0 2105 133 76 129 chr11 5542493 5542735 -143240737 + MER39B LTR ERV1 293 499 -154 899 177 20 0 chr11 5542736 5542910 -143240562 + FRAM SINE Alu 1 173 0 967 158 6 6 chr11 5542911 5543082 -143240390 + MER39 LTR ERV1 537 707 0 2434 95 0 0 chr11 5543572 5543876 -143239596 - AluSq SINE Alu -9 304 1 2282 98 10 0 chr11 5544161 5544457 -143239015 + AluSx SINE Alu 1 299 -13 387 172 46 0 chr11 5544625 5544712 -143238760 + L1MC5 LINE L1 7805 7895 -66 2472 63 3 0 chr11 5544932 5545231 -143238241 + AluY SINE Alu 1 300 -11 312 185 370 0 chr11 5545531 5545612 -143237860 + MER81 DNA DNA 1 111 -3 225 196 0 0 chr11 5546206 5546257 -143237215 + CT-rich Low_complexity Low_complexity 1 51 0 1738 174 119 31 chr11 5546871 5547290 -143236182 + LTR2B LTR ERV1 32 487 -3 2184 109 20 0 chr11 5547626 5547920 -143235552 + AluSx SINE Alu 3 302 -10 2397 135 49 91 chr11 5548646 5548858 -143234614 + L1MA8 LINE L1 5762 5981 -310 2722 36 0 0 chr11 5548858 5549166 -143234306 + AluY SINE Alu 1 308 -3 2397 135 49 91 chr11 5549166 5549502 -143233970 + L1MA8 LINE L1 5981 6287 -4 205 26 26 51 chr11 5549653 5549692 -143233780 + (TTTTTG)n Simple_repeat Simple_repeat 3 40 0 1642 223 72 31 chr11 5549989 5550433 -143233039 - MLT1C LTR MaLR 0 467 6 1059 83 0 0 chr11 5550551 5550683 -143232789 + AluY SINE Alu 1 132 -179 1746 85 0 13 chr11 5550683 5550918 -143232554 + AluY SINE Alu 66 297 -14 1106 228 154 23 chr11 5550936 5551365 -143232107 + MLT1H LTR MaLR 35 555 0 819 354 13 10 chr11 5551387 5551783 -143231689 - HERVL LTR ERVL -1195 4459 4063 671 215 45 40 chr11 5552005 5552182 -143231290 + AluJo SINE Alu 119 296 -16 322 260 39 0 chr11 5552381 5552458 -143231014 - HERVL LTR ERVL -2031 3733 3654 239 167 0 69 chr11 5552497 5552569 -143230903 - L1M4 LINE L1 -303 5818 5759 321 311 0 66 chr11 5552758 5552909 -143230563 - L2 LINE L2 -199 3073 2933 427 245 29 36 chr11 5553287 5553426 -143230046 + MIR SINE MIR 76 213 -49 216 328 95 39 chr11 5553593 5553825 -143229647 + L2 LINE L2 2627 2871 -443 26 30 0 0 chr11 5554106 5554139 -143229333 + AT_rich Low_complexity Low_complexity 1 33 0 322 38 19 19 chr11 5556278 5556331 -143227141 + (TTCA)n Simple_repeat Simple_repeat 2 54 0 253 320 13 0 chr11 5556336 5556411 -143227061 - L2 LINE L2 -13 3300 3225 2031 96 0 4 chr11 5556414 5556674 -143226798 + AluSg1 SINE Alu 32 290 -19 324 77 46 0 chr11 5556674 5556739 -143226733 + (TA)n Simple_repeat Simple_repeat 1 68 0 2188 114 0 25 chr11 5556832 5557147 -143226325 + AluSx SINE Alu 1 307 -5 219 325 100 0 chr11 5557591 5557671 -143225801 - L2 LINE L2 0 3313 3226 2274 102 0 3 chr11 5559627 5559920 -143223552 + AluSq SINE Alu 1 292 -21 1496 161 50 47 chr11 5559939 5560237 -143223235 - AluJo SINE Alu -13 299 1 372 333 33 0 chr11 5560423 5560543 -143222929 - L2 LINE L2 -2 3270 3147 186 290 76 23 chr11 5560838 5560969 -143222503 - MIR SINE MIR -20 242 105 1494 123 0 60 chr11 5561237 5561396 -143222076 + MER50 LTR ERV1 499 639 -95 2359 116 0 0 chr11 5561396 5561707 -143221765 - AluSp SINE Alu -2 311 1 1494 123 0 60 chr11 5561707 5561798 -143221674 + MER50 LTR ERV1 639 734 0 612 191 0 9 chr11 5561800 5561910 -143221562 + MER50-int LTR ERV1 4 112 -7093 267 31 0 0 chr11 5561910 5561942 -143221530 + (A)n Simple_repeat Simple_repeat 1 32 0 672 206 39 7 chr11 5562259 5562414 -143221058 + MER5C DNA MER1_type 1 160 -164 1604 153 11 0 chr11 5562416 5562678 -143220794 + L1MD3 LINE L1 7726 7990 -5 499 167 80 60 chr11 5562686 5562713 -143220759 + MER5C DNA MER1_type 172 197 -127 2389 103 0 0 chr11 5562713 5563024 -143220448 - AluSq SINE Alu -2 311 1 499 167 80 60 chr11 5563024 5563146 -143220326 + MER5C DNA MER1_type 197 324 0 219 262 186 38 chr11 5565265 5565475 -143217997 - L2 LINE L2 -220 3052 2812 189 355 0 0 chr11 5565626 5565702 -143217770 - L2 LINE L2 -611 2703 2628 1241 217 137 35 chr11 5565737 5566161 -143217311 + MLT1C LTR MaLR 1 467 0 249 310 28 0 chr11 5566169 5566240 -143217232 - L2 LINE L2 -42 3271 3199 468 259 91 14 chr11 5566259 5566402 -143217070 - L2 LINE L2 0 3313 3160 332 194 32 0 chr11 5566402 5566526 -143216946 + (AATAG)n Simple_repeat Simple_repeat 1 128 0 255 256 171 82 chr11 5566588 5566857 -143216615 + LTR33A LTR ERVL 13 305 -218 2761 70 99 5 chr11 5566880 5567283 -143216189 + LTR7 LTR ERV1 1 441 -9 14939 110 10 22 chr11 5567293 5570075 -143213397 + HERVH LTR ERV1 1 2995 -4718 5692 105 19 5 chr11 5570054 5570903 -143212569 + HERVH LTR ERV1 3140 4000 -3713 * 3001 132 5 2 chr11 5570898 5571509 -143211963 + HERVH LTR ERV1 4489 5149 -2564 * 1514 127 0 0 chr11 5571510 5571730 -143211742 + HERVH LTR ERV1 5600 5819 -1894 2446 81 65 14 chr11 5571730 5572101 -143211371 + HERVH LTR ERV1 7324 7713 0 2639 86 106 5 chr11 5572101 5572508 -143210964 + LTR7 LTR ERV1 1 448 -2 686 225 41 6 chr11 5572510 5572679 -143210793 + LTR33A LTR ERVL 339 513 -10 359 256 105 47 chr11 5572686 5572877 -143210595 - L2 LINE L2 -224 3089 2888 952 222 135 94 chr11 5572964 5573215 -143210257 + L2 LINE L2 2780 3019 -294 1377 264 3 115 chr11 5573215 5573545 -143209927 - AluSg SINE Alu -7 293 1 952 222 135 94 chr11 5573545 5573807 -143209665 + L2 LINE L2 3019 3313 0 556 296 36 105 chr11 5573806 5574085 -143209387 - L2 LINE L2 -575 2739 2501 * 829 168 0 0 chr11 5574085 5574216 -143209256 + FLAM_A SINE Alu 1 131 -2 556 296 36 105 chr11 5574216 5574382 -143209090 - L2 LINE L2 -813 2501 2325 1867 152 0 34 chr11 5574582 5574905 -143208567 + AluJb SINE Alu 1 312 0 2302 90 3 3 chr11 5574916 5575215 -143208257 + AluSp SINE Alu 1 299 -14 1992 172 0 6 chr11 5575448 5575762 -143207710 + AluSx SINE Alu 1 312 0 417 299 81 11 chr11 5575770 5575944 -143207528 + L1M4 LINE L1 5040 5225 -921 2923 106 5 23 chr11 5575973 5576157 -143207315 - MER57B LTR ERV1 0 434 248 2447 67 0 7 chr11 5576157 5576454 -143207018 + AluY SINE Alu 8 302 -9 2923 106 5 23 chr11 5576454 5576711 -143206761 - MER57B LTR ERV1 -186 248 1 437 292 156 29 chr11 5576716 5577024 -143206448 - L2 LINE L2 -1268 2046 1700 1362 274 114 9 chr11 5577117 5577574 -143205898 + MLT1J LTR MaLR 1 505 -6 2403 102 3 0 chr11 5577581 5577885 -143205587 + AluSx SINE Alu 1 305 -7 449 202 11 21 chr11 5577991 5578085 -143205387 + MIR SINE MIR 63 155 -107 * 636 368 40 35 chr11 5578079 5578381 -143205091 - L2 LINE L2 -1808 1506 1198 2635 61 0 0 chr11 5578381 5578692 -143204780 - AluY SINE Alu 0 311 1 636 368 40 35 chr11 5578692 5578984 -143204488 - L2 LINE L2 -2116 1198 909 435 271 97 13 chr11 5580038 5580193 -143203279 - MIR SINE MIR -63 199 32 2429 91 13 0 chr11 5580436 5580745 -143202727 - AluSp SINE Alu 0 313 1 1116 369 54 15 chr11 5581184 5581972 -143201500 + ERVL LTR ERVL 4484 5346 -418 909 189 26 5 chr11 5582183 5582374 -143201098 + MER4B LTR ERV1 1 195 -415 2428 81 3 0 chr11 5582374 5582671 -143200801 + AluSg SINE Alu 1 298 -12 21 0 0 0 chr11 5582673 5582694 -143200778 + AT_rich Low_complexity Low_complexity 1 21 0 729 154 147 13 chr11 5582696 5582852 -143200620 + MER4D LTR ERV1 357 533 -370 183 339 17 0 chr11 5583319 5583378 -143200094 + MIR SINE MIR 41 100 -162 1294 324 78 26 chr11 5583385 5584228 -143199244 + L2 LINE L2 1931 2817 -497 334 338 152 21 chr11 5584264 5584646 -143198826 + L2 LINE L2 2881 3312 -1 2241 109 3 3 chr11 5584700 5585002 -143198470 + AluSx SINE Alu 1 302 -10 229 204 0 0 chr11 5588503 5588547 -143194925 + GA-rich Low_complexity Low_complexity 1 44 0 417 340 66 33 chr11 5590788 5591123 -143192349 + L2 LINE L2 2550 2895 -419 220 322 91 16 chr11 5591314 5591435 -143192037 + L2 LINE L2 3162 3291 -22 184 135 19 19 chr11 5591447 5591499 -143191973 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 445 290 76 58 chr11 5591910 5592134 -143191338 + Charlie8 DNA MER1_type 12 239 -2178 701 177 38 144 chr11 5592142 5592214 -143191258 + L1MC5 LINE L1 7203 7281 -680 2569 26 16 7 chr11 5592214 5592518 -143190954 - AluYb8 SINE Alu -11 307 1 701 177 38 144 chr11 5592518 5592812 -143190660 + L1MC5 LINE L1 7281 7530 -431 702 193 0 0 chr11 5592813 5592932 -143190540 + AluJo/FLAM SINE Alu 2 120 -192 2398 109 3 0 chr11 5592932 5593243 -143190229 - AluSq SINE Alu -1 312 1 860 181 0 0 chr11 5593243 5593376 -143190096 - AluJb SINE Alu -177 135 3 607 197 67 84 chr11 5593401 5593513 -143189959 + L1MC5 LINE L1 7629 7741 -220 1518 219 0 17 chr11 5593513 5593814 -143189658 - AluJb SINE Alu -16 296 1 607 197 67 84 chr11 5593814 5593985 -143189487 + L1MC5 LINE L1 7741 7907 -54 307 68 0 0 chr11 5594491 5594535 -143188937 + AluSc SINE Alu 250 293 -6 576 299 73 17 chr11 5594589 5594823 -143188649 + MIR SINE MIR 2 248 -14 264 189 0 0 chr11 5595272 5595346 -143188126 + CT-rich Low_complexity Low_complexity 2 75 0 2356 101 6 16 chr11 5596574 5596890 -143186582 - AluSq SINE Alu 0 313 1 884 267 50 23 chr11 5596894 5597194 -143186278 + L2 LINE L2 3006 3313 0 1720 56 112 72 chr11 5597959 5598210 -143185262 - AluSq SINE Alu -52 261 1 331 366 50 24 chr11 5598412 5598775 -143184697 + L2 LINE L2 2684 3059 -213 401 329 36 0 chr11 5599774 5599914 -143183558 - L2 LINE L2 -24 3248 3104 241 158 105 66 chr11 5599893 5599969 -143183503 + L2 LINE L2 3231 3309 -4 * 1195 317 113 29 chr11 5600188 5601157 -143182315 + L2 LINE L2 1527 2577 -737 2157 96 4 7 chr11 5601185 5601465 -143182007 - AluSx SINE Alu -16 296 18 668 290 90 30 chr11 5601482 5601987 -143181485 + L2 LINE L2 2772 3313 0 1583 281 152 29 chr11 5601999 5602868 -143180604 - L2 LINE L2 -609 2705 1730 29 47 0 0 chr11 5603518 5603561 -143179911 + GC_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr11 5603856 5603877 -143179595 + GC_rich Low_complexity Low_complexity 1 21 0 529 289 65 9 chr11 5603967 5604178 -143179294 - MIR SINE MIR 0 262 39 1473 157 73 4 chr11 5604487 5604761 -143178711 - AluJo SINE Alu -19 293 1 403 208 33 25 chr11 5604973 5605093 -143178379 - L1MC5 LINE L1 -21 7940 7820 233 250 0 18 chr11 5605196 5605252 -143178220 - L2 LINE L2 -232 3040 2986 189 0 0 0 chr11 5605268 5605289 -143178183 + (TTCA)n Simple_repeat Simple_repeat 3 23 0 774 339 65 20 chr11 5605289 5605618 -143177854 - L2 LINE L2 -5 3267 2954 2152 161 44 53 chr11 5605618 5605799 -143177673 + MSTA LTR MaLR 1 182 -246 2092 112 3 11 chr11 5605799 5606109 -143177363 + AluSq SINE Alu 1 308 0 2152 161 44 53 chr11 5606109 5606284 -143177188 + MSTA LTR MaLR 182 356 -72 2517 87 0 0 chr11 5606284 5606594 -143176878 - AluY SINE Alu -1 310 1 2152 161 44 53 chr11 5606594 5606665 -143176807 + MSTA LTR MaLR 356 426 -2 774 339 65 20 chr11 5606665 5607097 -143176375 - L2 LINE L2 -318 2954 2425 662 203 0 7 chr11 5607949 5608087 -143175385 - FLAM_C SINE Alu -4 139 3 653 319 62 53 chr11 5608119 5608568 -143174904 - L2 LINE L2 -1142 2172 1720 3858 132 18 26 chr11 5608611 5609330 -143174142 + L1MA7 LINE L1 5576 6288 -3 2253 93 0 27 chr11 5609686 5609986 -143173486 - AluSg SINE Alu -18 292 1 1187 284 105 59 chr11 5610079 5610588 -143172884 + MLT1K LTR MaLR 3 540 -48 2020 134 3 3 chr11 5610588 5610880 -143172592 - AluSx SINE Alu -15 297 6 1187 284 105 59 chr11 5610880 5610915 -143172557 + MLT1K LTR MaLR 540 572 -16 276 216 86 60 chr11 5610950 5611066 -143172406 + LTR50 LTR ERVL 17 135 -660 428 258 102 21 chr11 5611244 5611430 -143172042 + LTR33A LTR ERVL 323 523 0 24 0 0 0 chr11 5611679 5611703 -143171769 + AT_rich Low_complexity Low_complexity 1 24 0 1738 171 11 7 chr11 5611703 5611984 -143171488 - AluJo SINE Alu -30 282 1 659 335 47 35 chr11 5612646 5613076 -143170396 + L2 LINE L2 2466 2900 -414 1708 209 8 11 chr11 5613458 5613821 -143169651 + MLT1A1 LTR MaLR 4 365 0 2448 286 114 32 chr11 5617267 5617989 -143165483 + L2 LINE L2 1738 2399 -914 2195 104 10 3 chr11 5617989 5618278 -143165194 - AluSq SINE Alu -22 291 1 2448 286 114 32 chr11 5618278 5618997 -143164475 + L2 LINE L2 2399 3309 -4 2019 161 0 3 chr11 5619121 5619432 -143164040 - AluJb SINE Alu -2 310 1 1213 59 0 0 chr11 5619748 5619884 -143163588 + AluSx SINE Alu 1 136 -177 1298 110 0 0 chr11 5619914 5620100 -143163372 + AluSx SINE Alu 121 306 0 1697 153 67 27 chr11 5620254 5620554 -143162918 - AluJb SINE Alu 0 312 1 193 403 131 14 chr11 5622454 5622873 -143160599 - L2 LINE L2 -1 3271 2804 230 191 0 32 chr11 5623058 5623121 -143160351 + (CCA)n Simple_repeat Simple_repeat 3 63 0 279 114 0 0 chr11 5623625 5623669 -143159803 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 666 345 74 30 chr11 5623671 5624103 -143159369 - L2 LINE L2 -15 3257 2807 289 331 222 3 chr11 5624148 5624459 -143159013 - L2 LINE L2 -897 2417 2039 580 252 60 13 chr11 5624483 5624634 -143158838 - MER91A DNA MER1_type -16 180 23 180 315 18 36 chr11 5624663 5624774 -143158698 - L2 LINE L2 -1287 2027 1919 216 0 0 0 chr11 5625364 5625388 -143158084 + (A)n Simple_repeat Simple_repeat 1 24 0 426 284 226 8 chr11 5626737 5626980 -143156492 + L2 LINE L2 3017 3312 -1 1251 182 13 98 chr11 5629211 5629607 -143153865 + MLT1A1 LTR MaLR 1 362 -3 397 295 85 0 chr11 5629607 5629736 -143153736 - MIR SINE MIR -104 158 19 2096 169 61 2 chr11 5629758 5630167 -143153305 + MER63B DNA MER1_type 2 434 -2 334 322 11 0 chr11 5630192 5630279 -143153193 + L2 LINE L2 3210 3297 -16 2383 95 3 3 chr11 5630488 5630793 -143152679 - AluY SINE Alu -6 305 1 760 309 96 13 chr11 5630955 5631482 -143151990 + L2 LINE L2 2737 3313 0 2508 94 0 0 chr11 5632193 5632500 -143150972 - AluSq SINE Alu -6 307 1 194 338 42 0 chr11 5632724 5632795 -143150677 - L2 LINE L2 -7 3265 3192 537 328 179 33 chr11 5634464 5635370 -143148102 + L2 LINE L2 2233 3272 0 181 107 0 0 chr11 5636462 5636490 -143146982 - L2 LINE L2 0 3272 3245 649 272 96 43 chr11 5636568 5637114 -143146358 - L2 LINE L2 -213 3059 2428 202 368 35 18 chr11 5637736 5637850 -143145622 + L2 LINE L2 2931 3046 -226 431 298 111 17 chr11 5637920 5638101 -143145371 + L2 LINE L2 3111 3308 -5 279 211 293 0 chr11 5638126 5638259 -143145213 + L2 LINE L2 2297 2468 -846 254 178 0 0 chr11 5638374 5638419 -143145053 - L2 LINE L2 -94 3178 3134 203 100 0 25 chr11 5638419 5638459 -143145013 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1999 134 13 39 chr11 5639015 5639321 -143144151 + AluJb SINE Alu 1 298 -14 563 247 147 0 chr11 5640124 5640294 -143143178 - MIR SINE MIR -62 200 6 559 234 60 6 chr11 5691414 5691581 -143091891 + MER104 DNA MER2_type 3 178 -2 473 198 279 10 chr11 5692291 5692488 -143090984 - L1ME4a LINE L1 -15 6106 5857 12397 106 35 51 chr11 5695535 5697524 -143085948 - Tigger1 DNA MER2_type -462 1956 1 544 292 146 13 chr11 5698500 5698980 -143084492 + L2 LINE L2 2683 3220 -93 287 240 55 110 chr11 5698998 5699079 -143084393 + MIR SINE MIR 11 82 -180 1933 155 0 19 chr11 5699079 5699395 -143084077 - AluJb SINE Alu -2 310 1 287 240 55 110 chr11 5699395 5699459 -143084013 + MIR SINE MIR 82 148 -114 867 153 0 8 chr11 5699460 5699591 -143083881 + FLAM_A SINE Alu 2 131 -2 2401 97 0 0 chr11 5699608 5699918 -143083554 + AluSg SINE Alu 1 310 0 27 62 0 0 chr11 5699920 5699968 -143083504 + AT_rich Low_complexity Low_complexity 1 48 0 318 268 134 0 chr11 5699968 5700080 -143083392 + MIR SINE MIR 136 262 0 232 268 24 0 chr11 5700626 5700708 -143082764 - L2 LINE L2 -2914 400 317 661 270 68 89 chr11 5700809 5701275 -143082197 + L2 LINE L2 2736 3210 -103 613 114 19 19 chr11 5701275 5701380 -143082092 + L1MA4A LINE L1 6188 6292 -11 661 270 68 89 chr11 5701380 5701395 -143082077 + L2 LINE L2 3210 3224 -89 2232 103 3 3 chr11 5701395 5701696 -143081776 + AluSx SINE Alu 7 307 -5 661 270 68 89 chr11 5701696 5701804 -143081668 + L2 LINE L2 3224 3313 0 609 233 31 146 chr11 5702214 5702500 -143080972 - MER102a DNA MER1_type -1087 330 83 2298 101 0 7 chr11 5702500 5702796 -143080676 - AluSq SINE Alu -19 294 1 609 233 31 146 chr11 5702796 5702831 -143080641 - MER102a DNA MER1_type -1334 83 46 198 305 92 28 chr11 5703011 5703152 -143080320 + MIR SINE MIR 112 261 -1 2447 50 0 7 chr11 5704645 5704928 -143078544 - AluY SINE Alu -30 281 1 349 310 25 49 chr11 5705034 5705237 -143078235 + L2 LINE L2 3062 3259 -54 1167 268 29 20 chr11 5705617 5705960 -143077512 - L1ME3 LINE L1 0 6162 5817 491 252 37 7 chr11 5706332 5706467 -143077005 + MIR SINE MIR 15 153 -109 579 313 89 11 chr11 5706721 5707002 -143076470 + L2 LINE L2 2553 2855 -459 454 306 16 107 chr11 5707037 5707422 -143076050 + L2 LINE L2 2888 3237 -35 1000 295 212 33 chr11 5707454 5707916 -143075556 - L2 LINE L2 -8 3305 2927 1806 166 3 14 chr11 5707916 5708212 -143075260 + AluJo SINE Alu 1 293 -19 1000 295 212 33 chr11 5708212 5708434 -143075038 - L2 LINE L2 -386 2927 2746 853 165 0 0 chr11 5708434 5708567 -143074905 + FLAM_C SINE Alu 1 133 0 1000 295 212 33 chr11 5708567 5709199 -143074273 - L2 LINE L2 -567 2746 1747 378 0 0 0 chr11 5709287 5709329 -143074143 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 510 104 13 0 chr11 5709534 5709611 -143073861 + L1PA15 LINE L1 6082 6159 -6 1795 152 7 11 chr11 5710683 5710952 -143072520 + AluJo SINE Alu 1 268 -44 213 39 0 0 chr11 5711845 5711871 -143071601 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 306 198 74 12 chr11 5711871 5711952 -143071520 - MLT1L LTR MaLR -93 522 437 451 292 38 52 chr11 5712048 5712297 -143071175 - MLT1L LTR MaLR -199 416 109 241 222 0 37 chr11 5712399 5712453 -143071019 - MLT1K LTR MaLR -200 388 337 308 324 105 32 chr11 5712502 5713129 -143070343 - HAL1b LINE L1 -614 734 62 2195 113 7 0 chr11 5713335 5713627 -143069845 - AluSq SINE Alu -19 294 1 13746 160 13 4 chr11 5713627 5715822 -143067650 - L1M1 LINE L1 -5106 2459 245 1994 218 59 49 chr11 5715826 5715946 -143067526 + L1M4 LINE L1 2933 3050 -3096 2374 83 0 32 chr11 5715946 5716260 -143067212 + AluSx SINE Alu 1 304 -8 1994 218 59 49 chr11 5716260 5716711 -143066761 + L1M4 LINE L1 3050 3515 -2631 414 0 0 0 chr11 5716711 5716757 -143066715 + (CA)n Simple_repeat Simple_repeat 1 46 0 1994 218 59 49 chr11 5716757 5716877 -143066595 + L1M4 LINE L1 3515 3632 -2514 294 95 0 0 chr11 5716878 5716920 -143066552 + (TCCC)n Simple_repeat Simple_repeat 4 45 0 1416 199 0 31 chr11 5716944 5717230 -143066242 - AluJo SINE Alu 0 312 36 326 361 57 0 chr11 5717254 5717412 -143066060 - L1M4 LINE L1 -529 5655 5489 703 182 42 0 chr11 5717436 5717579 -143065893 + MIR SINE MIR 21 169 -93 987 118 0 0 chr11 5718177 5718312 -143065160 - AluSq/x SINE Alu -174 139 5 365 313 68 11 chr11 5718316 5718492 -143064980 + L2 LINE L2 3128 3313 0 943 176 140 0 chr11 5718671 5718864 -143064608 - MLT1A1 LTR MaLR 0 365 146 729 137 11 0 chr11 5718866 5719047 -143064425 - L1MA9 LINE L1 -17 6295 6017 * 2012 116 9 19 chr11 5719046 5719365 -143064107 + L1MA9 LINE L1 5604 5919 -393 835 176 0 13 chr11 5719381 5719534 -143063938 - MLT1A1 LTR MaLR -214 151 1 462 254 9 0 chr11 5719653 5719767 -143063705 - HAL1 LINE L1 -815 1692 1578 1833 137 29 11 chr11 5719785 5720062 -143063410 - AluJb SINE Alu -26 286 5 301 339 39 8 chr11 5720223 5720350 -143063122 - L2 LINE L2 0 3272 3142 273 315 83 0 chr11 5722834 5722942 -143060530 + MIR SINE MIR 120 236 -26 400 271 44 35 chr11 5723169 5723372 -143060100 + L1MC4 LINE L1 7820 8024 -18 1708 182 55 0 chr11 5723430 5723721 -143059751 - AluJo SINE Alu -5 307 1 988 60 0 0 chr11 5723767 5723900 -143059572 - L1P4 LINE L1 -729 5432 5300 585 168 36 15 chr11 5724011 5724148 -143059324 - L1MA3 LINE L1 -255 6050 5911 4654 201 127 13 chr11 5724149 5725569 -143057903 - MER52A LTR ERV1 0 1755 1 13546 159 17 18 chr11 5725569 5726189 -143057283 - L1MA3 LINE L1 -392 5913 5294 2035 129 13 29 chr11 5726189 5726500 -143056972 - AluSx SINE Alu -6 306 1 2111 125 0 42 chr11 5726504 5726815 -143056657 - AluSq SINE Alu -15 298 1 13546 159 17 18 chr11 5726815 5729739 -143053733 - L1MA3 LINE L1 -1014 5291 2316 588 284 48 52 chr11 5732447 5732697 -143050775 + MIR SINE MIR 6 254 -8 211 301 108 52 chr11 5732783 5732996 -143050476 - L2 LINE L2 -220 3052 2828 197 222 122 56 chr11 5733223 5733313 -143050159 - MIR SINE MIR -148 114 19 * 735 361 138 7 chr11 5733297 5734017 -143049455 - L2 LINE L2 -681 2633 1820 221 320 0 13 chr11 5734429 5734507 -143048965 + L2 LINE L2 290 366 -2948 346 135 0 0 chr11 5734511 5734563 -143048909 - MIR SINE MIR -28 234 183 2423 96 0 19 chr11 5734582 5734896 -143048576 - AluSx SINE Alu -2 310 3 462 298 186 34 chr11 5734922 5735368 -143048104 + L2 LINE L2 386 899 -2415 294 243 68 0 chr11 5735437 5735511 -143047961 + L2 LINE L2 2605 2683 -631 567 275 39 45 chr11 5735651 5735985 -143047487 + L1ME4a LINE L1 5518 5849 -272 5357 232 47 32 chr11 5736066 5736659 -143046813 - L1M4 LINE L1 -1278 4868 4285 2221 110 0 7 chr11 5736659 5736960 -143046512 - AluSc SINE Alu -10 299 1 5357 232 47 32 chr11 5736960 5738157 -143045315 - L1M4 LINE L1 -1861 4285 3051 483 171 0 0 chr11 5738161 5738237 -143045235 - FLAM SINE Alu -16 127 52 859 272 90 63 chr11 5738250 5738885 -143044587 - L1MEc LINE L1 -4337 2059 1408 612 262 42 6 chr11 5738905 5739073 -143044399 - MLT1J2 LTR MaLR -276 174 1 1970 122 37 17 chr11 5739489 5739785 -143043687 - AluSg SINE Alu -8 302 1 253 204 54 21 chr11 5740141 5740234 -143043238 + L1ME LINE L1 5756 5851 -313 226 213 126 63 chr11 5740305 5740432 -143043040 + LTR50 LTR ERVL 23 157 -638 541 293 40 5 chr11 5740711 5740933 -143042539 + LTR33A LTR ERVL 292 521 -2 210 87 65 0 chr11 5742162 5742208 -143041264 + (TA)n Simple_repeat Simple_repeat 2 50 0 927 206 25 0 chr11 5742209 5742369 -143041103 - FRAM SINE Alu -2 164 1 582 287 141 23 chr11 5742939 5743329 -143040143 - MLT1J2 LTR MaLR -14 436 1 915 278 72 31 chr11 5743380 5743729 -143039743 - L2 LINE L2 -337 2977 2615 385 205 0 24 chr11 5744460 5744543 -143038929 + L2 LINE L2 1354 1434 -1880 247 233 96 14 chr11 5745222 5745295 -143038177 - L2 LINE L2 -45 3227 3149 205 284 49 107 chr11 5745536 5745761 -143037711 - L2 LINE L2 -458 2856 2645 875 239 0 0 chr11 5745970 5746146 -143037326 - FRAM SINE Alu -2 174 1 967 303 130 23 chr11 5746146 5746661 -143036811 - L2 LINE L2 -954 2360 1791 431 279 38 94 chr11 5747104 5747391 -143036081 - L2 LINE L2 -7 3265 2995 224 0 0 61 chr11 5747545 5747578 -143035894 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 200 400 24 0 chr11 5747579 5747704 -143035768 + L2 LINE L2 2415 2542 -772 266 271 132 78 chr11 5747712 5747841 -143035631 + MIR3 SINE MIR 38 173 -35 278 300 0 0 chr11 5748168 5748238 -143035234 + L2 LINE L2 3197 3266 -6 257 283 261 7 chr11 5748294 5748432 -143035040 + L3 LINE CR1 1314 1486 -91 214 120 20 60 chr11 5748935 5748985 -143034487 + G-rich Low_complexity Low_complexity 3 50 0 26 82 0 0 chr11 5749444 5749505 -143033967 + GC_rich Low_complexity Low_complexity 1 61 0 213 237 0 41 chr11 5749585 5749682 -143033790 + C-rich Low_complexity Low_complexity 2 94 0 404 203 175 68 chr11 5750226 5750403 -143033069 - MIR SINE MIR -17 245 50 783 284 50 67 chr11 5751102 5751256 -143032216 + L2 LINE L2 2864 3019 -253 2391 58 0 32 chr11 5751256 5751565 -143031907 - AluY SINE Alu -12 299 1 783 284 50 67 chr11 5751565 5751826 -143031646 + L2 LINE L2 3019 3272 0 474 248 67 0 chr11 5756278 5756383 -143027089 - L2 LINE L2 -3 3310 3199 256 313 36 18 chr11 5758133 5758245 -143025227 - MIR SINE MIR -40 222 109 296 351 90 45 chr11 5759037 5759325 -143024147 + L2 LINE L2 1138 1438 -1876 206 300 58 4 chr11 5759405 5759476 -143023996 - MIR SINE MIR -133 75 3 296 286 101 8 chr11 5759485 5759604 -143023868 - MIR SINE MIR -10 252 123 2425 73 0 17 chr11 5759666 5759968 -143023504 - AluSg SINE Alu -13 297 1 188 329 14 14 chr11 5760280 5760350 -143023122 - MIR SINE MIR -173 89 20 1700 302 220 45 chr11 5760829 5762859 -143020613 + L2 LINE L2 665 3061 -211 2164 119 47 39 chr11 5763954 5764315 -143019157 - THE1B LTR MaLR 0 364 1 451 260 67 0 chr11 5765068 5765172 -143018300 + L2 LINE L2 3197 3307 -6 1793 134 28 14 chr11 5765503 5765794 -143017678 - AluSq SINE Alu -14 299 5 30 0 0 0 chr11 5765867 5765897 -143017575 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr11 5766016 5766037 -143017435 + (A)n Simple_repeat Simple_repeat 1 21 0 2266 99 3 7 chr11 5766041 5766345 -143017127 + AluSx SINE Alu 1 303 -9 359 279 108 29 chr11 5766348 5766588 -143016884 + L2 LINE L2 2033 2291 -1023 463 298 159 5 chr11 5767704 5767912 -143015560 - MIR SINE MIR -14 248 9 189 121 0 0 chr11 5770242 5770275 -143013197 + (CA)n Simple_repeat Simple_repeat 2 34 0 321 282 17 43 chr11 5770998 5771115 -143012357 - L2 LINE L2 -569 2745 2632 294 309 178 25 chr11 5771368 5771715 -143011757 + L2 LINE L2 2649 3057 -215 34 24 0 0 chr11 5772175 5772216 -143011256 + GC_rich Low_complexity Low_complexity 1 41 0 1119 288 168 42 chr11 5772917 5773940 -143009532 - L2 LINE L2 -209 3063 1916 1229 129 5 5 chr11 5773951 5774145 -143009327 - L1PA13 LINE L1 -14 6149 5956 2484 73 3 0 chr11 5774328 5774629 -143008843 + AluSg SINE Alu 1 302 -8 234 296 144 8 chr11 5776272 5776404 -143007068 - L2 LINE L2 -1003 2311 2162 206 290 194 11 chr11 5779454 5779547 -143003925 + MIR SINE MIR 20 129 -79 38 61 0 0 chr11 5780541 5780607 -143002865 + GC_rich Low_complexity Low_complexity 1 66 0 221 393 76 7 chr11 5781211 5781356 -143002116 - L2 LINE L2 -12 3260 3106 294 357 104 0 chr11 5781412 5781594 -143001878 - MIR SINE MIR -10 252 52 209 373 59 0 chr11 5781989 5782091 -143001381 - L2 LINE L2 -709 2605 2498 185 332 82 29 chr11 5782094 5782302 -143001170 - L2 LINE L2 -775 2539 2321 202 370 28 19 chr11 5786971 5787079 -142996393 - MIR SINE MIR -140 122 14 289 273 45 36 chr11 5788110 5788220 -142995252 + MIR SINE MIR 73 183 -79 286 343 82 40 chr11 5788673 5789151 -142994321 + L2 LINE L2 479 976 -2338 1432 233 110 21 chr11 5796278 5796812 -142986660 + Charlie1 DNA MER1_type 15 2761 0 487 261 0 49 chr11 5797478 5797620 -142985852 + MIR3 SINE MIR 9 143 -65 2578 179 31 17 chr11 5802894 5803414 -142980058 + MER82 DNA MER2_type 98 624 -29 239 267 0 0 chr11 5803672 5803732 -142979740 + L2 LINE L2 3254 3313 0 323 318 189 43 chr11 5804611 5804627 -142978845 + L2 LINE L2 1992 2004 -1310 1847 158 13 0 chr11 5804627 5804930 -142978542 - AluJo SINE Alu -5 307 1 792 167 8 0 chr11 5804930 5805056 -142978416 - FLAM_A SINE Alu -3 130 4 323 318 189 43 chr11 5805056 5805595 -142977877 + L2 LINE L2 2003 2629 -685 1194 174 38 9 chr11 5805630 5805843 -142977629 - MER20 DNA MER1_type 0 219 1 540 362 111 15 chr11 5805924 5806330 -142977142 + L2 LINE L2 2827 3271 -1 318 287 119 21 chr11 5806676 5806819 -142976653 + L2 LINE L2 2617 2773 -541 305 341 125 0 chr11 5807024 5807200 -142976272 + L2 LINE L2 3075 3272 0 1708 76 9 0 chr11 5807324 5807547 -142975925 + AluY SINE Alu 74 298 -13 240 111 0 0 chr11 5809933 5809969 -142973503 + (CAG)n Simple_repeat Simple_repeat 1 36 0 675 306 90 73 chr11 5810668 5811499 -142971973 - L2 LINE L2 -5 3267 2407 586 336 147 38 chr11 5811726 5812612 -142970860 + L2 LINE L2 1799 2780 -534 282 318 114 15 chr11 5812991 5813123 -142970349 + L2 LINE L2 3125 3269 -3 205 306 56 0 chr11 5813440 5813512 -142969960 + MIR SINE MIR 113 188 -74 281 305 13 7 chr11 5814431 5814585 -142968887 + (CA)n Simple_repeat Simple_repeat 2 156 0 511 298 61 15 chr11 5815967 5816170 -142967302 - MIR SINE MIR -13 249 40 631 321 154 16 chr11 5816503 5816952 -142966520 - L2 LINE L2 -981 2333 1823 772 226 179 0 chr11 5817054 5817266 -142966206 + MIR SINE MIR 2 251 -11 674 275 72 13 chr11 5817281 5817517 -142965955 + MIR SINE MIR 7 256 -6 207 135 0 27 chr11 5817562 5817599 -142965873 - MIR SINE MIR -64 144 109 407 312 18 0 chr11 5817986 5818095 -142965377 - L2 LINE L2 -6 3307 3197 245 288 50 0 chr11 5818394 5818474 -142964998 - MIR SINE MIR -77 185 102 212 83 0 28 chr11 5818529 5818565 -142964907 + (TTTC)n Simple_repeat Simple_repeat 4 38 0 1243 332 112 49 chr11 5819483 5821215 -142962257 - L2 LINE L2 -41 3231 1376 767 314 134 21 chr11 5821174 5821934 -142961538 + L2 LINE L2 2427 3272 0 * 192 335 109 48 chr11 5822129 5822523 -142960949 - L2 LINE L2 -2227 1087 670 212 98 0 24 chr11 5823925 5823966 -142959506 + (CGGG)n Simple_repeat Simple_repeat 3 42 0 1334 162 37 26 chr11 5824255 5824643 -142958829 - L1M2 LINE L1 -743 5548 5160 1047 220 0 8 chr11 5824640 5824876 -142958596 - L1M2 LINE L1 -2267 3879 3646 * 5023 61 2 0 chr11 5824947 5825566 -142957906 - L1PA6 LINE L1 0 6154 5535 23 54 0 0 chr11 5825715 5825752 -142957720 + AT_rich Low_complexity Low_complexity 1 37 0 498 204 32 83 chr11 5826091 5826248 -142957224 - L1ME3A LINE L1 -3 6167 6019 870 215 158 13 chr11 5826435 5826663 -142956809 - MIR SINE MIR 0 262 2 220 272 150 45 chr11 5826828 5827074 -142956398 + L2 LINE L2 2219 2490 -824 309 316 12 37 chr11 5827582 5827976 -142955496 + GA-rich Low_complexity Low_complexity 1 384 0 * 326 300 18 41 chr11 5827848 5828018 -142955454 + G-rich Low_complexity Low_complexity 3 168 0 3285 70 2 4 chr11 5828123 5828596 -142954876 - L1P LINE L1 -987 5159 4688 720 324 71 32 chr11 5828606 5828846 -142954626 - LTR16C LTR ERVL 0 491 227 2054 162 75 15 chr11 5828846 5829248 -142954224 - MSTB LTR MaLR 0 426 1 720 324 71 32 chr11 5829248 5829414 -142954058 - LTR16C LTR ERVL -264 227 69 6587 64 26 0 chr11 5830096 5831651 -142951821 + L1PA7 LINE L1 4562 6148 -6 958 251 16 4 chr11 5831658 5831905 -142951567 + L1ME3A LINE L1 5574 5823 -347 1665 124 16 8 chr11 5831910 5832159 -142951313 + AluSg SINE Alu 1 251 -59 550 51 0 0 chr11 5832173 5832251 -142951221 + L1P LINE L1 4735 4812 -1334 235 122 82 0 chr11 5832256 5832305 -142951167 + AluSg SINE Alu 248 300 -2 887 254 46 37 chr11 5832305 5832655 -142950817 + L1ME3A LINE L1 5814 6166 -4 2139 186 60 4 chr11 5832733 5833200 -142950272 + MLT1D LTR MaLR 13 505 0 207 240 100 0 chr11 5833225 5833275 -142950197 + L2 LINE L2 3217 3271 -1 225 0 0 0 chr11 5835042 5835067 -142948405 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 870 95 44 0 chr11 5835092 5835229 -142948243 - L1MA3 LINE L1 -18 6287 6145 348 279 130 39 chr11 5835363 5835747 -142947725 + L1ME4a LINE L1 5672 6090 -31 974 181 46 3 chr11 5835893 5836096 -142947376 + MER20 DNA MER1_type 2 214 -5 838 201 11 11 chr11 5836861 5837040 -142946432 + MER66B LTR ERV1 1 179 -307 284 219 7 117 chr11 5837038 5837175 -142946297 + MER66B LTR ERV1 294 415 -71 * 8365 251 44 24 chr11 5837213 5840422 -142943050 + MER66-int LTR ERV1 1210 4225 -3531 1050 81 0 0 chr11 5840422 5840571 -142942901 - THE1B-int LTR MaLR -1431 149 1 2159 140 19 25 chr11 5840572 5840937 -142942535 - THE1B LTR MaLR -1 363 1 2340 93 0 3 chr11 5840988 5841289 -142942183 - AluY SINE Alu -11 300 1 21 0 0 0 chr11 5842521 5842542 -142940930 + AT_rich Low_complexity Low_complexity 1 21 0 185 265 88 39 chr11 5844350 5844452 -142939020 + MIR SINE MIR 37 143 -119 793 275 16 0 chr11 5844497 5844685 -142938787 - MLT1E LTR MaLR -4 589 399 502 268 30 45 chr11 5844685 5844883 -142938589 + MLT1A1 LTR MaLR 2 196 -169 2166 227 85 5 chr11 5845491 5846067 -142937405 - MER92B LTR ERV1 0 636 15 209 330 137 30 chr11 5846124 5846357 -142937115 - L2 LINE L2 -189 3083 2826 410 318 81 38 chr11 5846957 5847218 -142936254 + L2 LINE L2 3029 3300 -13 2073 101 35 0 chr11 5847221 5847507 -142935965 + AluSq SINE Alu 1 296 -17 977 264 49 0 chr11 5848477 5848806 -142934666 - L1ME3A LINE L1 -208 5962 5618 4971 110 10 0 chr11 5848893 5849577 -142933895 - LTR8 LTR ERV1 0 691 1 244 178 56 22 chr11 5849855 5849945 -142933527 + (TTATA)n Simple_repeat Simple_repeat 2 94 0 269 256 41 72 chr11 5850140 5850335 -142933137 - HAL1 LINE L1 -1166 1341 1153 2390 100 0 0 chr11 5850573 5850884 -142932588 - AluSx SINE Alu -1 311 1 250 227 120 0 chr11 5851000 5851075 -142932397 + MER5B DNA MER1_type 90 173 -5 2220 130 0 3 chr11 5852121 5852428 -142931044 + AluSq SINE Alu 1 306 -7 2128 114 0 3 chr11 5853540 5853837 -142929635 - AluSx SINE Alu -15 297 2 210 321 0 0 chr11 5854294 5854350 -142929122 - MIR SINE MIR -3 259 204 1717 212 62 58 chr11 5854441 5854960 -142928512 + MLT1E3 LTR MaLR 102 622 -2 1254 261 136 8 chr11 5854962 5855446 -142928026 + MLT1E-int LTR MaLR 1 602 -769 338 313 60 6 chr11 5855644 5855826 -142927646 + MLT1E-int LTR MaLR 696 887 -484 402 260 40 121 chr11 5856178 5856442 -142927030 + MLT1E-int LTR MaLR 1074 1309 -62 2006 138 65 6 chr11 5856442 5856796 -142926676 - THE1C LTR MaLR 0 375 1 402 260 40 121 chr11 5856796 5856854 -142926618 + MLT1E-int LTR MaLR 1309 1370 -1 1825 247 50 60 chr11 5856855 5857262 -142926210 + MLT1E LTR MaLR 1 402 -191 1130 219 75 64 chr11 5857262 5857623 -142925849 - MLT1A1 LTR MaLR 0 365 1 1825 247 50 60 chr11 5857623 5857814 -142925658 + MLT1E LTR MaLR 402 593 0 186 313 50 12 chr11 5857885 5857965 -142925507 - MIR SINE MIR -92 116 34 20611 30 3 0 chr11 5858361 5861619 -142921853 - L1PA4 LINE L1 -1 6154 2890 2283 120 0 0 chr11 5861894 5862203 -142921269 - AluSx SINE Alu -3 309 1 196 333 67 50 chr11 5863039 5863159 -142920313 - L2 LINE L2 -41 3231 3110 642 216 93 86 chr11 5863159 5863483 -142919989 + MER63B DNA MER1_type 6 331 -105 311 194 0 0 chr11 5863556 5863623 -142919849 + L1M4 LINE L1 5007 5073 -1073 5807 218 37 35 chr11 5863638 5864366 -142919106 - L1 LINE L1 -2977 3351 2626 2237 167 44 12 chr11 5864366 5864779 -142918693 + MSTB LTR MaLR 1 426 0 5807 218 37 35 chr11 5864779 5866119 -142917353 - L1 LINE L1 -3702 2626 1308 1709 183 3 7 chr11 5866119 5866414 -142917058 - AluJo SINE Alu -14 298 5 5807 218 37 35 chr11 5866414 5867723 -142915749 - L1 LINE L1 -5020 1308 2 266 303 48 7 chr11 5867729 5867874 -142915598 - L1MEc LINE L1 -4734 1662 1512 861 217 135 70 chr11 5868307 5868648 -142914824 - MLT1A1 LTR MaLR 0 365 3 22 0 0 0 chr11 5869254 5869276 -142914196 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr11 5876728 5876750 -142906722 + AT_rich Low_complexity Low_complexity 1 22 0 1532 126 40 0 chr11 5876873 5877095 -142906377 - AluSx SINE Alu -81 231 1 2129 126 3 0 chr11 5877600 5877902 -142905570 + AluSx SINE Alu 1 303 -9 7729 58 7 3 chr11 5878597 5879541 -142903931 - LTR13 LTR ERVK 0 1007 60 691 93 39 62 chr11 5879523 5879652 -142903820 - LTR13 LTR ERVK -881 126 1 * 2349 127 9 76 chr11 5879726 5879767 -142903705 + L1MA5 LINE L1 5876 5918 -382 2180 121 0 10 chr11 5879767 5880074 -142903398 + AluSx SINE Alu 1 304 -8 2349 127 9 76 chr11 5880074 5880422 -142903050 + L1MA5 LINE L1 5918 6234 -66 2193 99 26 118 chr11 5880422 5880835 -142902637 + L1PA12 LINE L1 5784 6161 -7 2349 127 9 76 chr11 5880835 5880892 -142902580 + L1MA5 LINE L1 6234 6293 -7 2418 71 0 10 chr11 5881328 5881623 -142901849 - AluSg SINE Alu -18 292 1 413 109 29 196 chr11 5882023 5882080 -142901392 + L1MA7 LINE L1 5917 5939 -352 2079 130 7 0 chr11 5882080 5882388 -142901084 + AluSx SINE Alu 1 310 -2 413 109 29 196 chr11 5882388 5882468 -142901004 + L1MA7 LINE L1 5939 6031 -260 402 262 179 24 chr11 5882555 5882723 -142900749 + MIR SINE MIR 37 230 -32 2219 103 20 3 chr11 5882905 5883206 -142900266 - AluSx SINE Alu -6 306 1 1003 305 89 10 chr11 5883599 5884015 -142899457 + LTR16A LTR ERVL 1 449 -1 966 214 68 19 chr11 5884971 5885177 -142898295 - MER20 DNA MER1_type -3 216 1 379 216 166 0 chr11 5885257 5885396 -142898076 - HAL1b LINE L1 -1 1347 1186 2383 89 0 0 chr11 5885497 5885790 -142897682 - AluSx SINE Alu -19 293 1 1474 77 6 0 chr11 5885971 5886152 -142897320 + AluSg/x SINE Alu 108 289 -21 921 147 96 189 chr11 5886299 5886632 -142896840 + AluSq SINE Alu 2 303 0 186 322 122 0 chr11 5886639 5886754 -142896718 + L2 LINE L2 3139 3267 -5 230 322 0 0 chr11 5888149 5888208 -142895264 - L2 LINE L2 -3 3269 3211 2059 165 75 71 chr11 5888222 5888713 -142894759 - MLT1D LTR MaLR 0 505 13 2805 245 65 26 chr11 5888783 5889684 -142893788 - L1ME3A LINE L1 0 6170 5238 548 229 41 46 chr11 5889749 5889967 -142893505 - Charlie2 DNA MER1_type -489 2373 2157 * 2296 269 60 95 chr11 5889961 5890391 -142893081 - Charlie2b DNA MER1_type -1512 1270 826 2152 125 0 13 chr11 5890391 5890703 -142892769 + AluSx SINE Alu 1 308 -4 2296 269 60 95 chr11 5890703 5891582 -142891890 - Charlie2b DNA MER1_type -1956 826 7 200 204 0 23 chr11 5891590 5891634 -142891838 + L2 LINE L2 3191 3233 -80 1974 95 12 0 chr11 5891640 5891892 -142891580 - AluSg SINE Alu -55 255 1 670 250 133 0 chr11 5891912 5892100 -142891372 + LTR33 LTR ERVL 1 213 -308 429 259 19 14 chr11 5892154 5892314 -142891158 + LTR33 LTR ERVL 319 513 -8 319 273 55 27 chr11 5892363 5892473 -142890999 + L2 LINE L2 2585 2697 -617 1770 118 0 0 chr11 5892474 5892720 -142890752 - Tigger3(Golem) DNA MER2_type -1 3028 2783 189 0 0 0 chr11 5892720 5892741 -142890731 + (T)n Simple_repeat Simple_repeat 1 21 0 1165 174 0 54 chr11 5892753 5892977 -142890495 - AluJo SINE Alu -100 212 1 540 332 78 27 chr11 5893061 5893436 -142890036 + L2 LINE L2 2699 3080 -192 2346 103 3 6 chr11 5893626 5893938 -142889534 + AluSq SINE Alu 1 311 -2 676 188 38 0 chr11 5894108 5894241 -142889231 + Charlie4 DNA MER1_type 17 154 -1807 540 202 118 45 chr11 5894260 5894438 -142889034 + Charlie4 DNA MER1_type 1770 1960 -1 1993 157 0 0 chr11 5894862 5895156 -142888316 + AluJo SINE Alu 1 294 -18 1365 211 33 15 chr11 5896336 5896673 -142886799 + MER97b DNA MER1_type? 1 343 -710 258 105 0 0 chr11 5896695 5896733 -142886739 + (T)n Simple_repeat Simple_repeat 1 38 0 4245 96 5 17 chr11 5896734 5897327 -142886145 - LTR8 LTR ERV1 -105 586 1 34778 103 86 73 chr11 5897327 5897789 -142885683 - HUERS-P1 LTR ERV1 0 6263 5808 1101 15 8 8 chr11 5897789 5897923 -142885549 - AluY SINE Alu -4 307 174 34778 103 86 73 chr11 5897923 5900073 -142883399 - HUERS-P1 LTR ERV1 -455 5808 3687 2903 16 0 0 chr11 5900073 5900414 -142883058 + SVA Other Other 1061 1401 0 34778 103 86 73 chr11 5900414 5900886 -142882586 - HUERS-P1 LTR ERV1 -2576 3687 3222 2342 100 0 0 chr11 5900886 5901186 -142882286 - AluY SINE Alu -11 300 1 34778 103 86 73 chr11 5901186 5902923 -142880549 - HUERS-P1 LTR ERV1 -3041 3222 1210 405 102 0 0 chr11 5902923 5902982 -142880490 + (CA)n Simple_repeat Simple_repeat 2 60 0 34778 103 86 73 chr11 5902982 5904208 -142879264 - HUERS-P1 LTR ERV1 -5053 1210 1 990 95 0 0 chr11 5904208 5904334 -142879138 - LTR8 LTR ERV1 0 691 566 551 195 18 26 chr11 5904348 5904461 -142879011 + MER97a DNA MER1_type? 393 504 -390 2395 68 0 10 chr11 5905502 5905795 -142877677 + AluSq SINE Alu 1 290 -23 1034 242 25 39 chr11 5906125 5906410 -142877062 - MLT1C LTR MaLR 0 467 187 2466 70 3 0 chr11 5906459 5906760 -142876712 - AluSx SINE Alu -10 302 1 209 200 0 0 chr11 5906760 5906800 -142876672 + (TATG)n Simple_repeat Simple_repeat 3 42 0 896 111 11 99 chr11 5906808 5906989 -142876483 - MLT1C LTR MaLR -302 165 1 335 272 183 27 chr11 5907044 5907268 -142876204 + MER97c DNA MER1_type? 767 1025 -65 27 29 0 0 chr11 5909082 5909116 -142874356 + AT_rich Low_complexity Low_complexity 1 34 0 2411 79 0 0 chr11 5910725 5911017 -142872455 + AluY SINE Alu 2 293 -18 187 208 113 0 chr11 5911368 5911421 -142872051 + L2 LINE L2 2584 2642 -672 2625 18 0 0 chr11 5912007 5912292 -142871180 + L1PA2 LINE L1 5871 6155 0 681 264 77 4 chr11 5912457 5912692 -142870780 + MER112 DNA MER1_type 2 253 -7 323 353 131 31 chr11 5912707 5913181 -142870291 + L2 LINE L2 2743 3266 -6 4551 160 43 46 chr11 5913584 5914779 -142868693 - L1MA9 LINE L1 -233 6079 4882 1704 175 7 14 chr11 5914779 5915076 -142868396 + AluJb SINE Alu 5 299 -13 4551 160 43 46 chr11 5915076 5915507 -142867965 - L1MA9 LINE L1 -1430 4882 4477 573 27 55 0 chr11 5915507 5915580 -142867892 - L1PA4 LINE L1 -1 6154 6078 4551 160 43 46 chr11 5915580 5915703 -142867769 - L1MA9 LINE L1 -1835 4477 4355 221 345 97 0 chr11 5915767 5915880 -142867592 + L2 LINE L2 3149 3272 0 1573 101 0 0 chr11 5916144 5916343 -142867129 - AluSq SINE Alu -114 199 1 207 114 0 0 chr11 5916512 5916547 -142866925 + (CA)n Simple_repeat Simple_repeat 2 36 0 261 314 89 8 chr11 5916837 5917013 -142866459 - L2 LINE L2 -939 2375 2146 498 355 80 60 chr11 5917424 5918314 -142865158 - L2 LINE L2 -341 2973 2066 186 300 40 0 chr11 5918399 5918449 -142865023 + L2 LINE L2 3123 3174 -98 213 39 0 0 chr11 5919061 5919087 -142864385 + (A)n Simple_repeat Simple_repeat 1 26 0 2201 122 26 0 chr11 5919976 5920157 -142863315 - AluSx SINE Alu 0 312 118 282 29 0 0 chr11 5920157 5920192 -142863280 + (TG)n Simple_repeat Simple_repeat 2 36 0 2201 122 26 0 chr11 5920192 5920314 -142863158 - AluSx SINE Alu -194 118 1 3118 208 43 43 chr11 5920914 5921732 -142861740 + L1M4 LINE L1 3617 4434 -1712 271 238 105 29 chr11 5921935 5922040 -142861432 - MIR SINE MIR -114 148 36 218 333 14 14 chr11 5922096 5922168 -142861304 + L2 LINE L2 352 423 -2891 383 245 128 0 chr11 5922451 5922553 -142860919 - L2 LINE L2 0 3313 3199 227 356 52 17 chr11 5922557 5922672 -142860800 - L2 LINE L2 -15 3257 3139 800 216 167 39 chr11 5922848 5923130 -142860342 - L2 LINE L2 0 3313 2996 445 147 13 0 chr11 5924123 5924198 -142859274 - LTR33A LTR ERVL -1 522 447 2030 135 6 25 chr11 5924219 5924537 -142858935 + AluSx SINE Alu 1 312 0 430 219 76 90 chr11 5924537 5924641 -142858831 - LTR50 LTR ERVL -184 611 507 1762 178 7 0 chr11 5924641 5924945 -142858527 + AluJo SINE Alu 1 306 -6 430 219 76 90 chr11 5924945 5925020 -142858452 - LTR50 LTR ERVL -288 507 349 2235 120 3 0 chr11 5925023 5925323 -142858149 + AluSp SINE Alu 1 301 -12 737 266 145 0 chr11 5925326 5925567 -142857905 - LTR50 LTR ERVL -517 278 3 674 289 69 24 chr11 5925690 5925936 -142857536 + MIR SINE MIR 4 260 -2 1595 178 45 20 chr11 5925995 5926287 -142857185 + AluJb SINE Alu 1 299 -13 336 291 58 0 chr11 5926345 5926448 -142857024 + L3 LINE CR1 1270 1378 -199 309 298 0 43 chr11 5926647 5926788 -142856684 + GA-rich Low_complexity Low_complexity 1 135 0 2292 114 7 3 chr11 5927211 5927519 -142855953 - AluSx SINE Alu -3 309 1 731 309 73 36 chr11 5929302 5929632 -142853840 + L2 LINE L2 2542 2883 -431 369 331 59 52 chr11 5930430 5930720 -142852752 + L2 LINE L2 2932 3223 -49 222 37 0 0 chr11 5932050 5932077 -142851395 + (CAGCC)n Simple_repeat Simple_repeat 2 28 0 1082 284 39 70 chr11 5933048 5933253 -142850219 + L2 LINE L2 2834 3044 -269 2213 96 0 0 chr11 5933253 5933546 -142849926 - AluSg SINE Alu -17 293 1 1082 284 39 70 chr11 5933546 5933822 -142849650 + L2 LINE L2 3044 3300 -13 246 62 0 0 chr11 5933822 5933854 -142849618 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 21 36 0 0 chr11 5934025 5934053 -142849419 + AT_rich Low_complexity Low_complexity 1 28 0 3480 211 78 75 chr11 5934634 5935926 -142847546 - L1MC4 LINE L1 -89 7953 6658 1694 156 44 0 chr11 5936150 5936420 -142847052 + AluJb SINE Alu 1 282 -30 330 326 29 36 chr11 5938326 5938464 -142845008 - L2 LINE L2 -32 3240 3104 564 217 28 21 chr11 5938875 5939018 -142844454 - MER104 DNA Tc2 -2 178 35 224 224 105 13 chr11 5939066 5939142 -142844330 - MIR SINE MIR -16 246 164 258 32 0 0 chr11 5939539 5939570 -142843902 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 244 272 48 40 chr11 5939694 5939819 -142843653 - L2 LINE L2 -746 2568 2443 432 315 105 6 chr11 5939975 5940156 -142843316 - MIR SINE MIR -16 246 48 288 0 0 0 chr11 5942657 5942689 -142840783 + (CA)n Simple_repeat Simple_repeat 2 33 0 295 293 57 36 chr11 5942765 5942905 -142840567 - LTR67 LTR ERVL -2 555 413 309 279 75 54 chr11 5942979 5943126 -142840346 - LTR67 LTR ERVL -311 246 97 802 218 53 0 chr11 5943356 5943544 -142839928 + L2 LINE L2 2146 2343 -971 1174 305 160 33 chr11 5943846 5944705 -142838767 + L2 LINE L2 2340 3308 -5 961 279 205 42 chr11 5947216 5947711 -142835761 + L2 LINE L2 2199 2831 -483 2221 86 3 0 chr11 5947711 5948001 -142835471 - AluY SINE Alu -20 291 1 961 279 205 42 chr11 5948001 5948169 -142835303 + L2 LINE L2 2831 2970 -344 331 368 0 0 chr11 5951327 5951463 -142832009 + CT-rich Low_complexity Low_complexity 1 136 0 880 199 42 0 chr11 5951617 5951783 -142831689 + MIR SINE MIR 88 260 -2 476 204 52 64 chr11 5951823 5951995 -142831477 - MLT1D LTR MaLR -275 230 61 188 321 24 12 chr11 5954374 5954458 -142829014 - L3 LINE CR1 -541 1036 952 1258 302 132 29 chr11 5954499 5955499 -142827973 + L2 LINE L2 1944 3038 -234 182 262 48 0 chr11 5955670 5955712 -142827760 + L2 LINE L2 3176 3219 -94 1727 174 27 0 chr11 5955752 5956050 -142827422 - AluJb SINE Alu -6 306 1 436 179 74 0 chr11 5956062 5956157 -142827315 - MIR SINE MIR 0 262 161 345 214 39 68 chr11 5956156 5956248 -142827224 + MIR SINE MIR 91 181 -81 * 197 65 32 0 chr11 5956248 5956279 -142827193 + (TCTA)n Simple_repeat Simple_repeat 1 32 0 189 0 0 0 chr11 5959800 5959821 -142823651 + (TCC)n Simple_repeat Simple_repeat 2 22 0 734 159 18 0 chr11 5960939 5961052 -142822420 + FLAM_C SINE Alu 9 123 -20 3071 226 74 43 chr11 5961163 5961230 -142822242 - L1MEc LINE L1 -2683 3463 3400 1436 155 79 94 chr11 5961230 5961538 -142821934 + THE1C LTR MaLR 1 303 -72 2148 107 0 0 chr11 5961538 5961827 -142821645 - AluSq SINE Alu -24 289 1 1436 155 79 94 chr11 5961827 5961899 -142821573 + THE1C LTR MaLR 303 375 0 3071 226 74 43 chr11 5961899 5961982 -142821490 - L1MEc LINE L1 -2746 3400 3321 726 147 16 39 chr11 5961982 5962111 -142821361 - FLAM_A SINE Alu -7 126 1 2156 92 0 3 chr11 5962116 5962408 -142821064 - AluSc SINE Alu -18 291 1 3071 226 74 43 chr11 5962408 5963469 -142820003 - L1MEc LINE L1 -2828 3318 2234 549 286 95 29 chr11 5963748 5963989 -142819483 + MIR SINE MIR 6 262 0 393 338 186 29 chr11 5964239 5964550 -142818922 - L2 LINE L2 -9 3263 2904 533 307 161 8 chr11 5964653 5965031 -142818441 - L2 LINE L2 -752 2562 2127 2218 176 76 44 chr11 5966352 5966860 -142816612 + L1MB8 LINE L1 4757 5288 -858 2018 134 0 7 chr11 5966860 5967166 -142816306 + AluSx SINE Alu 1 304 -8 2218 176 76 44 chr11 5967166 5967248 -142816224 + L1MB8 LINE L1 5288 5366 -780 3882 174 18 45 chr11 5967275 5968414 -142815058 + L1MCb LINE L1 335 1438 -4849 716 186 20 17 chr11 5968415 5968699 -142814773 + GA-rich Low_complexity Low_complexity 1 284 0 734 175 134 31 chr11 5968701 5968924 -142814548 + L1MCb LINE L1 1405 1650 -4914 * 3670 155 23 84 chr11 5968906 5968951 -142814521 + L1MB8 LINE L1 5354 5400 -778 2062 132 3 7 chr11 5968951 5969261 -142814211 + AluSx SINE Alu 2 310 -2 3670 155 23 84 chr11 5969261 5970088 -142813384 + L1MB8 LINE L1 5400 6173 -5 31 0 0 0 chr11 5970305 5970336 -142813136 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr11 5971128 5971152 -142812320 + AT_rich Low_complexity Low_complexity 1 24 0 280 310 122 109 chr11 5972461 5972790 -142810682 - L2 LINE L2 -3 3269 2937 339 198 99 20 chr11 5972971 5973072 -142810400 + L1MC3 LINE L1 6988 7096 -689 405 171 89 24 chr11 5973100 5973184 -142810288 + MLT1F1 LTR MaLR 45 133 -442 1963 169 92 10 chr11 5973185 5973576 -142809896 + L1MD3 LINE L1 7416 7838 -157 756 168 0 23 chr11 5973583 5973714 -142809758 + AluJo SINE Alu 7 134 -178 1324 173 7 83 chr11 5973723 5974023 -142809449 + AluJb SINE Alu 1 277 -35 925 214 0 0 chr11 5974030 5974220 -142809252 + AluJo SINE Alu 127 316 0 390 196 39 10 chr11 5974229 5974331 -142809141 + L1MD2 LINE L1 6255 6359 0 302 297 123 13 chr11 5974374 5974529 -142808943 + MLT1K LTR MaLR 398 569 -19 632 339 121 40 chr11 5974603 5974768 -142808704 + L2 LINE L2 1859 2009 -1305 2106 97 10 3 chr11 5974768 5975057 -142808415 - AluSg SINE Alu -13 297 7 632 339 121 40 chr11 5975057 5975771 -142807701 + L2 LINE L2 2009 2881 -433 335 324 125 37 chr11 5975836 5976163 -142807309 + L2 LINE L2 2916 3271 -1 783 271 59 65 chr11 5976190 5976729 -142806743 + L2 LINE L2 1685 2220 -1094 269 289 115 78 chr11 5978170 5978751 -142804721 + L2 LINE L2 1479 2081 -1233 469 268 74 21 chr11 5978785 5978975 -142804497 + L2 LINE L2 3114 3313 0 2145 122 0 3 chr11 5979444 5979738 -142803734 + AluSx SINE Alu 5 297 -15 2361 108 0 0 chr11 5979838 5980148 -142803324 + AluSg SINE Alu 1 307 -3 2624 42 0 7 chr11 5982892 5983199 -142800273 + AluY SINE Alu 1 305 -6 1888 213 60 112 chr11 5983225 5983981 -142799491 + L2 LINE L2 2247 2962 -352 808 159 15 0 chr11 5984017 5984149 -142799323 - FLAM_C SINE Alu -9 134 1 1767 164 49 4 chr11 5984149 5984501 -142798971 + MLT2B1 LTR ERVL 2 418 -97 233 154 0 0 chr11 5984495 5984534 -142798938 + MLT2B1 LTR ERVL 372 410 -4 * 2071 204 49 62 chr11 5984540 5985156 -142798316 - MLT1E2 LTR MaLR -6 620 23 3941 107 27 4 chr11 5985156 5985671 -142797801 - MER1A DNA MER1_type 0 527 1 2071 204 49 62 chr11 5985671 5985694 -142797778 - MLT1E2 LTR MaLR -603 23 1 864 264 204 39 chr11 5985702 5986108 -142797364 - MLT1J LTR MaLR -30 481 9 781 261 116 10 chr11 5986135 5986445 -142797027 + L2 LINE L2 2962 3304 -9 761 254 142 5 chr11 5986477 5986682 -142796790 + MIR SINE MIR 14 246 -16 924 181 12 12 chr11 5986852 5987018 -142796454 + AluJb SINE Alu 140 305 -7 330 324 97 0 chr11 5987052 5987228 -142796244 + L2 LINE L2 1219 1411 -1903 2182 121 41 89 chr11 5987240 5987419 -142796053 - MLT2C1 LTR ERVL -2 395 209 862 191 56 31 chr11 5987419 5987581 -142795891 - FRAM SINE Alu 0 166 1 2182 121 41 89 chr11 5987581 5987816 -142795656 - MLT2C1 LTR ERVL -188 209 1 792 242 34 86 chr11 5987982 5988135 -142795337 - L2 LINE L2 -6 3307 3178 2130 85 0 4 chr11 5988135 5988407 -142795065 + AluY SINE Alu 35 305 -6 792 242 34 86 chr11 5988407 5988580 -142794892 - L2 LINE L2 -135 3178 2998 311 333 44 90 chr11 5988585 5988608 -142794864 + L2 LINE L2 2967 2990 -282 1930 136 0 36 chr11 5988608 5988917 -142794555 - AluJo SINE Alu -14 298 1 311 333 44 90 chr11 5988917 5989214 -142794258 + L2 LINE L2 2990 3272 0 2063 122 3 10 chr11 5989650 5989981 -142793491 - AluSx SINE Alu 0 312 1 25 0 0 0 chr11 5991957 5991982 -142791490 + AT_rich Low_complexity Low_complexity 1 25 0 299 241 0 0 chr11 5992752 5992810 -142790662 - L2 LINE L2 -1 3271 3214 28 29 0 0 chr11 5995570 5995605 -142787867 + AT_rich Low_complexity Low_complexity 1 35 0 263 257 109 17 chr11 5995612 5995778 -142787694 + L1ME LINE L1 5658 5845 -325 2063 236 52 29 chr11 5996003 5996525 -142786947 - MER87 LTR ERV1 -7 534 1 5595 221 29 43 chr11 5997021 5997514 -142785958 - L1MA8 LINE L1 -5 6286 5788 225 0 0 0 chr11 5997514 5997539 -142785933 + (TG)n Simple_repeat Simple_repeat 2 26 0 5595 221 29 43 chr11 5997539 5997555 -142785917 - L1MA8 LINE L1 -503 5788 5773 225 0 0 0 chr11 5997555 5997580 -142785892 + (CA)n Simple_repeat Simple_repeat 2 26 0 5595 221 29 43 chr11 5997580 5998043 -142785429 - L1MA8 LINE L1 -518 5773 5305 2434 77 3 0 chr11 5998043 5998343 -142785129 - AluY SINE Alu -10 301 1 5595 221 29 43 chr11 5998343 6000125 -142783347 - L1MA8 LINE L1 -986 5305 3581 225 130 0 22 chr11 6000136 6000182 -142783290 - L1MA8 LINE L1 -2699 3447 3403 388 321 88 38 chr11 6000289 6000551 -142782921 - L1ME LINE L1 -454 5667 5393 23 0 0 0 chr11 6000902 6000925 -142782547 + AT_rich Low_complexity Low_complexity 1 23 0 293 278 19 9 chr11 6001103 6001211 -142782261 - L1ME LINE L1 -1525 4621 4513 696 301 141 19 chr11 6001231 6001770 -142781702 + L2 LINE L2 1330 1934 -1380 243 88 0 0 chr11 6001770 6001804 -142781668 + (TA)n Simple_repeat Simple_repeat 2 35 0 1030 17 8 0 chr11 6001807 6001926 -142781546 - L1PA5 LINE L1 0 6154 6035 494 263 97 14 chr11 6002554 6002771 -142780701 - Charlie7 DNA MER1_type -575 2037 1803 2635 184 82 24 chr11 6002776 6003239 -142780233 - L1MD1 LINE L1 -179 6063 5553 978 103 314 0 chr11 6003239 6003414 -142780058 - MER30 DNA MER1_type 0 230 1 2635 184 82 24 chr11 6003414 6003575 -142779897 - L1MD1 LINE L1 -689 5553 5403 195 42 0 0 chr11 6003614 6003638 -142779834 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 282 315 22 16 chr11 6004137 6004321 -142779151 - AluJb SINE Alu -10 292 108 845 211 77 35 chr11 6004616 6004690 -142778782 - L1MB7 LINE L1 -304 5880 5811 1786 180 0 0 chr11 6004690 6005005 -142778467 - AluSx SINE Alu 0 315 1 845 211 77 35 chr11 6005005 6005189 -142778283 - L1MB7 LINE L1 -373 5811 5610 1409 199 15 7 chr11 6005193 6005544 -142777928 - L1MB7 LINE L1 -714 5470 5118 466 294 121 9 chr11 6007581 6007812 -142775660 - MIR SINE MIR -1 261 5 1404 201 33 23 chr11 6008124 6008237 -142775235 + AluJo SINE Alu 2 112 -200 405 0 0 0 chr11 6008237 6008282 -142775190 + (CA)n Simple_repeat Simple_repeat 2 46 0 1404 201 33 23 chr11 6008282 6008467 -142775005 + AluJo SINE Alu 112 303 -9 596 258 62 49 chr11 6009281 6009617 -142773855 - L1M1 LINE L1 -563 5741 5406 1136 124 0 0 chr11 6009622 6009783 -142773689 - AluSq SINE Alu -24 289 129 563 314 86 37 chr11 6009814 6010323 -142773149 - L2 LINE L2 -1076 2238 1705 673 133 0 0 chr11 6010325 6010462 -142773010 - AluSg/x SINE Alu 0 327 191 235 333 135 0 chr11 6010467 6010593 -142772879 - L2 LINE L2 -1814 1500 1358 556 240 23 0 chr11 6011823 6011952 -142771520 - FLAM_C SINE Alu -10 133 2 289 306 50 91 chr11 6011993 6012278 -142771194 - L2 LINE L2 -410 2904 2632 2525 143 105 16 chr11 6012278 6012726 -142770746 + LTR45B LTR ERV1 2 489 0 289 306 50 91 chr11 6012726 6012760 -142770712 - L2 LINE L2 -682 2632 2598 237 113 57 19 chr11 6013162 6013215 -142770257 - MIR3 SINE MIR -7 201 147 432 0 0 0 chr11 6013824 6013872 -142769600 + (TG)n Simple_repeat Simple_repeat 2 49 0 1525 151 0 99 chr11 6013873 6014185 -142769287 - AluJb SINE Alu -27 285 5 254 303 61 24 chr11 6014333 6014498 -142768974 - MIR SINE MIR -73 189 19 184 352 11 11 chr11 6019323 6019411 -142764061 + L2 LINE L2 2228 2315 -999 2377 93 0 0 chr11 6020060 6020361 -142763111 - AluY SINE Alu -10 301 1 23 0 0 0 chr11 6020576 6020599 -142762873 + AT_rich Low_complexity Low_complexity 1 23 0 184 264 69 69 chr11 6020617 6020704 -142762768 - MIR SINE MIR -158 104 18 200 136 0 68 chr11 6020938 6020982 -142762490 + MIR SINE MIR 222 262 0 3443 70 5 0 chr11 6021498 6021938 -142761534 - THE1B-int LTR MaLR -1138 442 1 1124 131 15 50 chr11 6021938 6022136 -142761336 - THE1B LTR MaLR 0 364 174 775 33 0 0 chr11 6022136 6022227 -142761245 - AluYb8 SINE Alu -2 316 226 5344 145 10 6 chr11 6022421 6023348 -142760124 + L1PA12 LINE L1 5166 6098 -70 2190 113 0 0 chr11 6023403 6023686 -142759786 + AluSc SINE Alu 1 283 -26 383 322 27 14 chr11 6024010 6024156 -142759316 + L2 LINE L2 3154 3301 -12 310 316 42 53 chr11 6024181 6024371 -142759101 - MIR SINE MIR -67 195 8 198 0 0 0 chr11 6024847 6024869 -142758603 + (T)n Simple_repeat Simple_repeat 1 22 0 1556 106 55 0 chr11 6025344 6025562 -142757910 - MER30 DNA MER1_type 0 230 1 196 305 103 46 chr11 6026102 6026276 -142757196 - L2 LINE L2 -251 3021 2838 283 91 0 45 chr11 6026578 6026622 -142756850 - THE1C LTR MaLR -333 42 1 2116 75 33 23 chr11 6026632 6026939 -142756533 - THE1C-int LTR MaLR -11 1569 1260 875 170 61 31 chr11 6026948 6027162 -142756310 - THE1C LTR MaLR -191 184 1 2399 75 7 0 chr11 6027222 6027515 -142755957 + AluY SINE Alu 1 295 -16 265 347 155 19 chr11 6027521 6027792 -142755680 - L2 LINE L2 -626 2688 2381 13771 72 7 1 chr11 6027954 6029716 -142753756 + PABL_A-int LTR ERV1 3243 5015 0 4884 68 39 45 chr11 6029716 6029975 -142753497 + PABL_A LTR ERV1 1 260 -400 348 0 0 23 chr11 6029975 6030019 -142753453 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 1942 129 0 18 chr11 6030019 6030306 -142753166 - AluY SINE Alu -30 281 1 4884 68 39 45 chr11 6030306 6030708 -142752764 + PABL_A LTR ERV1 258 660 0 312 349 85 25 chr11 6030709 6030944 -142752528 - L2 LINE L2 -468 2846 2598 197 195 0 0 chr11 6031460 6031501 -142751971 + MIR3 SINE MIR 161 201 -7 321 297 45 74 chr11 6031889 6032158 -142751314 + L2 LINE L2 2598 2858 -456 206 333 143 9 chr11 6032269 6032374 -142751098 + MIR SINE MIR 27 145 -63 431 345 110 44 chr11 6033155 6033474 -142749998 + L2 LINE L2 2933 3272 0 6376 79 15 30 chr11 6033990 6034925 -142748547 - THE1B-int LTR MaLR -659 921 1 2107 121 53 31 chr11 6034925 6035281 -142748191 - THE1B LTR MaLR 0 364 1 2331 173 32 12 chr11 6035281 6035777 -142747695 - L1MC3 LINE L1 -575 7210 6705 5107 137 9 6 chr11 6035925 6036853 -142746619 + L1PA12 LINE L1 5166 6098 -70 2326 102 0 0 chr11 6036909 6037203 -142746269 + AluSc SINE Alu 1 294 -15 371 329 27 14 chr11 6037519 6037665 -142745807 + L2 LINE L2 3154 3301 -12 329 316 42 53 chr11 6037690 6037880 -142745592 - MIR SINE MIR -67 195 8 234 0 0 0 chr11 6038351 6038377 -142745095 + (T)n Simple_repeat Simple_repeat 1 26 0 1428 110 55 0 chr11 6038853 6039071 -142744401 - MER30 DNA MER1_type 0 230 1 196 305 103 46 chr11 6039611 6039785 -142743687 - L2 LINE L2 -251 3021 2838 22 0 0 0 chr11 6039834 6039856 -142743616 + AT_rich Low_complexity Low_complexity 1 22 0 348 179 26 0 chr11 6039909 6040026 -142743446 + (TA)n Simple_repeat Simple_repeat 1 120 0 200 175 29 10 chr11 6040055 6040158 -142743314 + (TA)n Simple_repeat Simple_repeat 2 106 0 345 209 146 32 chr11 6040167 6040325 -142743147 - L1ME4a LINE L1 -23 6098 5923 622 256 93 15 chr11 6040515 6040847 -142742625 - Charlie7 DNA MER1_type -452 2160 1803 2355 190 81 26 chr11 6040852 6041315 -142742157 - L1MD1 LINE L1 -179 6063 5543 905 97 314 0 chr11 6041315 6041490 -142741982 - MER30 DNA MER1_type 0 230 1 2355 190 81 26 chr11 6041490 6041682 -142741790 - L1MD1 LINE L1 -699 5543 5363 195 42 0 0 chr11 6041690 6041714 -142741758 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 302 306 79 104 chr11 6041719 6042160 -142741312 - HAL1 LINE L1 -1046 1461 1032 1965 139 0 0 chr11 6042203 6042504 -142740968 - AluSx SINE Alu 0 301 1 1929 166 0 6 chr11 6042728 6043042 -142740430 - AluJb SINE Alu 0 312 1 305 291 92 28 chr11 6043136 6043277 -142740195 - HAL1b LINE L1 -869 479 330 255 282 86 61 chr11 6043383 6043546 -142739926 + L2 LINE L2 2621 2787 -527 31 26 0 0 chr11 6043642 6043680 -142739792 + AT_rich Low_complexity Low_complexity 1 38 0 188 241 35 0 chr11 6044097 6044155 -142739317 + MIR SINE MIR 99 158 -104 2537 40 3 7 chr11 6045936 6046239 -142737233 - AluY SINE Alu -9 302 1 551 327 19 34 chr11 6046782 6047103 -142736369 - L1ME4a LINE L1 -2077 5731 5416 1623 177 14 31 chr11 6047478 6047772 -142735700 - AluJo SINE Alu -15 297 9 1667 154 56 36 chr11 6047797 6048103 -142735369 - AluSx SINE Alu 0 312 1 201 344 135 50 chr11 6048504 6049059 -142734413 - L2 LINE L2 -348 2966 2365 219 293 187 0 chr11 6049234 6049357 -142734115 - L2 LINE L2 0 3313 3168 627 281 24 0 chr11 6049605 6049772 -142733700 + MIR SINE MIR 92 262 0 440 293 117 59 chr11 6049886 6050070 -142733402 + L2 LINE L2 2949 3121 -192 189 0 0 0 chr11 6050070 6050091 -142733381 + (TTAA)n Simple_repeat Simple_repeat 3 23 0 2105 99 7 0 chr11 6050091 6050375 -142733097 - AluSp SINE Alu -27 286 1 440 293 117 59 chr11 6050375 6050530 -142732942 + L2 LINE L2 3120 3309 -4 183 371 0 0 chr11 6050630 6050692 -142732780 - MIR SINE MIR -1 261 200 7254 36 1 21 chr11 6052761 6054203 -142729269 + L1PA5 LINE L1 4722 6145 -9 22 0 0 0 chr11 6054486 6054508 -142728964 + AT_rich Low_complexity Low_complexity 1 22 0 467 292 15 22 chr11 6054581 6054718 -142728754 - L2 LINE L2 -9 3304 3169 2150 210 12 37 chr11 6055498 6056013 -142727459 + MLT1D LTR MaLR 4 505 0 438 301 180 49 chr11 6056102 6056418 -142727054 + L2 LINE L2 1390 1663 -1651 771 120 40 13 chr11 6056418 6056568 -142726904 - L1MB8 LINE L1 -11 6167 6014 438 301 180 49 chr11 6056568 6056863 -142726609 + L2 LINE L2 1663 2081 -1233 506 148 31 39 chr11 6056954 6057082 -142726390 - L1MA10 LINE L1 -1 6333 6207 345 244 24 85 chr11 6057105 6057269 -142726203 + L2 LINE L2 2255 2408 -906 6425 176 14 11 chr11 6057700 6059066 -142724406 - MSTB-int LTR MaLR -219 1361 1 748 164 22 0 chr11 6059066 6059200 -142724272 - MSTB LTR MaLR -2 424 288 23 54 0 0 chr11 6061926 6061963 -142721509 + AT_rich Low_complexity Low_complexity 1 37 0 1827 168 10 0 chr11 6063878 6064170 -142719302 - AluSx SINE Alu -17 295 1 917 132 0 22 chr11 6064277 6064413 -142719059 + FLAM_C SINE Alu 1 133 0 356 371 65 12 chr11 6064995 6065316 -142718156 + HAL1b LINE L1 95 432 -916 2318 87 3 0 chr11 6066130 6066430 -142717042 + AluY SINE Alu 1 301 -10 532 313 102 23 chr11 6066768 6067110 -142716362 + L1MB1 LINE L1 3590 3958 -2188 2117 128 0 19 chr11 6067466 6067778 -142715694 + AluSx SINE Alu 2 307 -5 25 65 0 0 chr11 6068060 6068106 -142715366 + AT_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr11 6068163 6068192 -142715280 + AT_rich Low_complexity Low_complexity 1 29 0 206 227 0 0 chr11 6068498 6068542 -142714930 + A-rich Low_complexity Low_complexity 4 47 0 34 65 0 0 chr11 6068553 6068615 -142714857 + AT_rich Low_complexity Low_complexity 1 62 0 4250 176 27 31 chr11 6068685 6068935 -142714537 + L1MB1 LINE L1 4778 5028 -1140 1830 149 4 0 chr11 6068935 6069210 -142714262 + AluSp SINE Alu 30 305 -8 4250 176 27 31 chr11 6069210 6070349 -142713123 + L1MB1 LINE L1 5028 6161 -7 22 0 0 0 chr11 6070757 6070779 -142712693 + AT_rich Low_complexity Low_complexity 1 22 0 192 308 6 141 chr11 6070855 6071011 -142712461 - MIR SINE MIR -79 183 49 462 195 11 0 chr11 6071198 6071285 -142712187 - MER58B DNA MER1_type 0 341 254 180 0 0 0 chr11 6071312 6071332 -142712140 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 708 237 59 23 chr11 6071391 6071610 -142711862 - MER58B DNA MER1_type -114 227 1 2154 107 4 0 chr11 6071999 6072309 -142711163 + AluSx SINE Alu 1 311 0 246 292 63 69 chr11 6073536 6073709 -142709763 + MIR SINE MIR 11 183 -79 566 320 63 5 chr11 6073814 6074036 -142709436 - L2 LINE L2 -1 3312 3078 236 167 17 33 chr11 6074276 6074336 -142709136 + L1MC/D LINE L1 5711 5769 -2039 302 307 76 43 chr11 6074889 6075469 -142708003 - LTR57-int LTR ERVL -2560 2783 2225 1602 194 32 55 chr11 6075580 6076014 -142707458 - LTR47B LTR ERVL -19 424 1 448 303 98 57 chr11 6076549 6076916 -142706556 + L2 LINE L2 2877 3258 -55 205 349 46 46 chr11 6076939 6077091 -142706381 - L2 LINE L2 -654 2660 2509 2281 101 0 0 chr11 6077099 6077387 -142706085 + AluSx SINE Alu 13 300 -12 2461 80 0 0 chr11 6077963 6078264 -142705208 + AluY SINE Alu 1 301 -10 181 331 57 38 chr11 6078913 6079070 -142704402 - L2 LINE L2 -999 2315 2156 194 182 0 68 chr11 6079269 6079313 -142704159 - MIR SINE MIR 0 262 222 188 287 58 58 chr11 6079547 6079634 -142703838 + MIR SINE MIR 18 104 -158 23 0 0 0 chr11 6079652 6079675 -142703797 + AT_rich Low_complexity Low_complexity 1 23 0 2395 89 0 3 chr11 6079890 6080192 -142703280 + AluSg SINE Alu 1 301 -9 208 173 40 40 chr11 6080226 6080301 -142703171 + (TTATA)n Simple_repeat Simple_repeat 1 75 0 1617 165 6 84 chr11 6080460 6080794 -142702678 - AluJo SINE Alu -4 308 1 391 300 47 88 chr11 6080834 6081119 -142702353 - L2 LINE L2 -410 2904 2632 2341 145 102 16 chr11 6081119 6081568 -142701904 + LTR45B LTR ERV1 2 489 0 391 300 47 88 chr11 6081568 6081602 -142701870 - L2 LINE L2 -682 2632 2598 211 340 112 15 chr11 6081650 6081847 -142701625 - L2 LINE L2 -1105 2209 1994 236 113 57 19 chr11 6082004 6082057 -142701415 - MIR3 SINE MIR -7 201 147 423 0 0 0 chr11 6082668 6082715 -142700757 + (TG)n Simple_repeat Simple_repeat 2 48 0 1534 154 0 99 chr11 6082716 6083028 -142700444 - AluJb SINE Alu -27 285 5 570 281 51 6 chr11 6083175 6083353 -142700119 - MIR SINE MIR -73 189 4 476 325 102 11 chr11 6083780 6084054 -142699418 + L2 LINE L2 2570 2868 -446 1599 232 30 48 chr11 6084068 6084733 -142698739 - L1M4 LINE L1 -2468 4176 3524 4537 180 49 5 chr11 6084757 6085232 -142698240 - L1MA7 LINE L1 -22 6269 5817 1806 171 44 21 chr11 6085232 6085572 -142697900 - MER7A DNA MER2_type 0 346 1 4537 180 49 5 chr11 6085572 6086699 -142696773 - L1MA7 LINE L1 -474 5817 4590 1186 198 90 0 chr11 6086699 6086967 -142696505 - MSTB1 LTR MaLR -140 292 1 1821 160 57 19 chr11 6086967 6087386 -142696086 - L1MA7 LINE L1 -1707 4439 4005 2422 173 6 35 chr11 6087389 6087870 -142695602 - MER52A LTR ERV1 0 1755 1289 4004 167 118 156 chr11 6088117 6088782 -142694690 - L1 LINE L1 -863 5283 4594 912 207 119 0 chr11 6088782 6089043 -142694429 - MSTB1 LTR MaLR -140 292 1 4004 167 118 156 chr11 6089043 6089466 -142694006 - L1 LINE L1 -1552 4594 4157 8214 165 112 23 chr11 6089466 6091078 -142692394 - MER52A LTR ERV1 0 1755 1 4004 167 118 156 chr11 6091078 6091605 -142691867 - L1 LINE L1 -1989 4157 3478 839 244 32 8 chr11 6091782 6092032 -142691440 - L1M4 LINE L1 -6256 286 31 367 311 73 23 chr11 6092202 6092421 -142691051 + MIR SINE MIR 33 262 0 2626 40 0 3 chr11 6092590 6092893 -142690579 - AluY SINE Alu -9 302 1 1194 151 8 40 chr11 6093159 6093231 -142690241 + L1MA8 LINE L1 6032 6105 -186 1947 172 52 41 chr11 6093231 6093650 -142689822 - MSTB LTR MaLR 0 426 3 1194 151 8 40 chr11 6093650 6093828 -142689644 + L1MA8 LINE L1 6105 6274 -17 2282 101 0 16 chr11 6093852 6094158 -142689314 + AluSg SINE Alu 1 301 -9 552 122 0 11 chr11 6094158 6094248 -142689224 + L1MB3 LINE L1 6055 6143 -40 290 177 32 0 chr11 6094254 6094316 -142689156 + L1 LINE L1 3816 3879 -2267 332 238 148 8 chr11 6094370 6094492 -142688980 + LTR37B LTR ERV1 330 468 0 21 0 0 0 chr11 6094544 6094565 -142688907 + AT_rich Low_complexity Low_complexity 1 21 0 2293 232 35 3 chr11 6095004 6095608 -142687864 + L1ME1 LINE L1 5539 6161 -5 22 35 0 0 chr11 6095741 6095770 -142687702 + AT_rich Low_complexity Low_complexity 1 29 0 370 346 54 19 chr11 6095906 6096111 -142687361 - HAL1 LINE L1 -869 1638 1427 420 249 30 117 chr11 6101132 6101329 -142682143 + MIR SINE MIR 70 249 -13 441 66 0 0 chr11 6101449 6101510 -142681962 + (TG)n Simple_repeat Simple_repeat 1 61 0 231 283 22 36 chr11 6101545 6101683 -142681789 - L1ME LINE L1 -510 5656 5521 224 341 135 0 chr11 6102481 6102607 -142680865 + L2 LINE L2 1358 1500 -1814 639 133 0 0 chr11 6102612 6102753 -142680719 + AluSg/x SINE Alu 194 334 0 723 312 84 37 chr11 6102755 6103265 -142680207 + L2 LINE L2 1705 2238 -1076 1192 107 0 18 chr11 6103296 6103454 -142680018 + AluSq SINE Alu 129 288 -25 224 30 30 0 chr11 6103454 6103487 -142679985 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 3742 185 19 28 chr11 6103488 6104370 -142679102 + L1MA9 LINE L1 5439 6312 0 736 259 38 46 chr11 6105553 6105900 -142677572 - L1MD3 LINE L1 0 7995 7652 557 284 24 47 chr11 6106406 6106617 -142676855 + L3 LINE CR1 765 970 -607 279 354 71 0 chr11 6107872 6107999 -142675473 - L2 LINE L2 0 3272 3137 426 331 41 6 chr11 6109971 6110143 -142673329 - MIR SINE MIR -26 236 59 191 284 178 58 chr11 6111390 6111598 -142671874 + L2 LINE L2 2620 2852 -462 469 261 127 13 chr11 6113827 6113984 -142669488 + MIR SINE MIR 73 247 -15 8023 161 24 8 chr11 6114325 6115641 -142667831 - MSTA-int LTR MaLR -221 1430 89 2725 95 92 5 chr11 6115641 6116053 -142667419 + LTR7 LTR ERV1 1 448 -2 8023 161 24 8 chr11 6116053 6116144 -142667328 - MSTA-int LTR MaLR -1562 89 1 1905 161 39 14 chr11 6116144 6116499 -142666973 - MSTA LTR MaLR 0 428 65 1681 132 68 37 chr11 6116511 6116836 -142666636 - LTR10A LTR ERV1 -61 548 214 273 253 126 0 chr11 6116858 6116945 -142666527 - LTR10A LTR ERV1 -511 98 1 432 149 0 0 chr11 6116947 6117014 -142666458 - MSTA LTR MaLR -361 67 1 554 292 116 4 chr11 6117840 6118073 -142665399 - MIR SINE MIR 0 262 4 1442 195 47 30 chr11 6118384 6118497 -142664975 + AluJo SINE Alu 2 112 -200 387 0 0 0 chr11 6118497 6118540 -142664932 + (CA)n Simple_repeat Simple_repeat 2 44 0 1442 195 47 30 chr11 6118540 6118723 -142664749 + AluJo SINE Alu 112 303 -9 11503 223 38 30 chr11 6120081 6121790 -142661682 - L1PA16 LINE L1 0 6223 4528 333 82 0 0 chr11 6121790 6121839 -142661633 + (TG)n Simple_repeat Simple_repeat 2 50 0 11503 223 38 30 chr11 6121839 6123806 -142659666 - L1PA16 LINE L1 -1695 4528 2577 2393 89 0 13 chr11 6123806 6124119 -142659353 - AluSg1 SINE Alu 0 309 1 11503 223 38 30 chr11 6124119 6124228 -142659244 - L1PA16 LINE L1 -3646 2577 2470 909 183 0 0 chr11 6124228 6124397 -142659075 + ALR/Alpha Satellite centromeric 3 171 0 11503 223 38 30 chr11 6124397 6124952 -142658520 - L1PA16 LINE L1 -3753 2470 1921 387 0 0 0 chr11 6124952 6124995 -142658477 + (TA)n Simple_repeat Simple_repeat 1 43 0 2552 42 3 16 chr11 6124995 6125306 -142658166 - AluY SINE Alu -4 307 1 11503 223 38 30 chr11 6125306 6126612 -142656860 - L1PA16 LINE L1 -4301 1922 363 419 299 58 48 chr11 6126732 6127043 -142656429 - L1PA16 LINE L1 -5838 366 53 658 424 44 18 chr11 6127252 6127754 -142655718 - L1M2 LINE L1 -6320 529 15 603 214 13 7 chr11 6127773 6127927 -142655545 - ERVL LTR ERVL -1739 4025 3871 614 178 0 0 chr11 6127944 6128062 -142655410 + L1ME1 LINE L1 5813 5930 -236 886 283 84 27 chr11 6128215 6128956 -142654516 - L1PBb LINE L1 -4965 1883 1008 429 296 58 48 chr11 6129076 6129387 -142654085 - L1PBb LINE L1 -5838 1011 698 658 424 44 18 chr11 6129596 6130098 -142653374 - L1PBb LINE L1 -6320 529 15 603 214 13 7 chr11 6130117 6130271 -142653201 - ERVL LTR ERVL -1739 4025 3871 1006 226 4 4 chr11 6130288 6130527 -142652945 + L1ME1 LINE L1 5813 6051 -115 1985 105 25 11 chr11 6130533 6130818 -142652654 + AluSg SINE Alu 1 289 -21 462 226 8 15 chr11 6131265 6131398 -142652074 - L1MA7 LINE L1 -4 6287 6156 289 188 29 51 chr11 6131434 6131572 -142651900 - Charlie5 DNA MER1_type -126 2486 2352 2178 149 32 5 chr11 6131570 6131946 -142651526 - L1PA16 LINE L1 0 6166 5781 473 103 16 159 chr11 6131952 6132078 -142651394 - MER50 LTR ERV1 -130 604 497 1659 194 51 15 chr11 6134149 6134561 -142648911 - Charlie4a DNA MER1_type -33 475 49 1321 198 15 10 chr11 6135495 6135847 -142647625 + L1MB8 LINE L1 5118 5470 -714 2320 188 42 21 chr11 6135851 6136035 -142647437 + L1MB8 LINE L1 5610 5789 -389 1797 180 0 0 chr11 6136035 6136350 -142647122 + AluSx SINE Alu 1 315 0 2320 188 42 21 chr11 6136350 6136692 -142646780 + L1MB8 LINE L1 5789 6148 -30 415 263 22 118 chr11 6137042 6137270 -142646202 - L1ME LINE L1 -339 5782 5577 274 219 27 41 chr11 6137604 6137677 -142645795 - L2 LINE L2 -8 3305 3234 221 356 0 0 chr11 6137721 6137794 -142645678 + L2 LINE L2 3237 3309 -4 204 209 0 0 chr11 6138369 6138412 -142645060 + (CA)n Simple_repeat Simple_repeat 2 44 0 194 367 75 17 chr11 6138497 6138617 -142644855 + L2 LINE L2 3137 3263 -9 419 251 94 6 chr11 6140672 6140843 -142642629 - L1MC4 LINE L1 0 8042 7857 * 1071 263 67 25 chr11 6140841 6141420 -142642052 + L1ME3A LINE L1 5261 5889 -281 277 273 82 49 chr11 6141404 6141854 -142641618 + L1ME3 LINE L1 4754 5232 -914 * 282 334 77 15 chr11 6141882 6142206 -142641266 + L1ME3 LINE L1 5254 5591 -574 399 295 71 22 chr11 6142360 6142543 -142640929 + L1ME3 LINE L1 5752 5943 -219 563 296 70 50 chr11 6143322 6143739 -142639733 + L1ME LINE L1 5310 5738 -383 1978 158 103 8 chr11 6143739 6144126 -142639346 - MSTB LTR MaLR -2 424 1 563 296 70 50 chr11 6144126 6144150 -142639322 + L1ME LINE L1 5738 5760 -361 3237 142 45 6 chr11 6144461 6144968 -142638504 - MER1A DNA MER1_type 0 527 1 42240 39 3 0 chr11 6145213 6150356 -142633116 + L1P LINE L1 1 5161 -985 4646 11 0 0 chr11 6150495 6151019 -142632453 + L1PA3 LINE L1 5628 6151 -4 216 0 0 0 chr11 6151054 6151078 -142632394 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 918 214 31 5 chr11 6151078 6151274 -142632198 + THE1C LTR MaLR 175 375 0 255 388 53 24 chr11 6151284 6151490 -142631982 + L2 LINE L2 2765 2976 -338 6268 26 3 1 chr11 6154535 6155275 -142628197 - L1PA4 LINE L1 -3 6152 5412 1419 324 53 19 chr11 6155709 6156345 -142627127 + L2 LINE L2 2184 2841 -473 193 250 100 33 chr11 6156384 6156444 -142627028 - MER5B DNA MER1_type 0 178 115 237 225 75 0 chr11 6156508 6156588 -142626884 + L1ME LINE L1 197 282 -5923 268 271 88 0 chr11 6157476 6157646 -142625826 + L1M3d LINE L1 1025 1209 -4682 347 231 0 33 chr11 6157859 6157950 -142625522 + L1ME LINE L1 1532 1619 -4777 * 652 246 11 29 chr11 6157928 6158103 -142625369 + L1MEc LINE L1 36 207 -6189 3204 269 61 32 chr11 6158107 6159458 -142624014 + L1MEc LINE L1 353 1751 -4645 2111 121 0 10 chr11 6159458 6159756 -142623716 + AluSx SINE Alu 1 295 -17 3204 269 61 32 chr11 6159756 6159858 -142623614 + L1MEc LINE L1 1751 1849 -4547 248 226 0 0 chr11 6159870 6159974 -142623498 + L1MEc LINE L1 2463 2627 -3588 351 0 0 0 chr11 6159982 6160021 -142623451 + (CA)n Simple_repeat Simple_repeat 2 40 0 6703 59 9 22 chr11 6160023 6160968 -142622504 - L1PA7 LINE L1 -21 6133 5201 5420 101 33 12 chr11 6160968 6161778 -142621694 + L1PA15 LINE L1 5337 6163 -2 521 303 76 32 chr11 6162179 6162364 -142621108 + LTR33 LTR ERVL 18 210 -311 321 237 51 85 chr11 6162420 6162538 -142620934 + LTR33 LTR ERVL 304 417 -104 192 77 0 0 chr11 6162894 6162920 -142620552 + (CA)n Simple_repeat Simple_repeat 2 27 0 231 254 28 14 chr11 6162929 6163000 -142620472 - L1ME LINE L1 -204 5986 5915 489 283 81 12 chr11 6163132 6163305 -142620167 - MIR SINE MIR -73 189 5 530 286 83 43 chr11 6163305 6163822 -142619650 - L1ME LINE L1 -312 5878 5341 384 320 73 77 chr11 6164020 6164595 -142618877 - L1ME LINE L1 -1016 5199 4627 338 287 81 46 chr11 6164595 6164769 -142618703 + MER5A DNA MER1_type 7 186 -3 664 302 116 67 chr11 6164778 6164931 -142618541 - L1ME LINE L1 -1586 4629 4485 1907 140 32 0 chr11 6164931 6165210 -142618262 - AluSg SINE Alu -22 288 1 664 302 116 67 chr11 6165210 6165800 -142617672 - L1ME LINE L1 -1730 4485 3850 2022 234 123 31 chr11 6165989 6166730 -142616742 - L1MEc LINE L1 -3193 3022 2227 2347 86 0 19 chr11 6166730 6167045 -142616427 - AluY SINE Alu -2 309 1 2022 234 123 31 chr11 6167045 6167269 -142616203 - L1MEc LINE L1 -3988 2227 2025 659 300 106 29 chr11 6167407 6167784 -142615688 - L1MEc LINE L1 -5936 460 55 323 214 0 67 chr11 6167912 6168001 -142615471 - L1ME4a LINE L1 -71 6050 5968 874 171 0 0 chr11 6168197 6168343 -142615129 + FRAM SINE Alu 30 175 -1 271 205 39 26 chr11 6168675 6168753 -142614719 - L1ME4a LINE L1 -495 5626 5548 512 290 54 27 chr11 6168821 6169007 -142614465 + MIR SINE MIR 72 262 0 311 222 20 46 chr11 6169046 6169230 -142614242 - L1ME4a LINE L1 -897 5405 5256 737 173 167 0 chr11 6169231 6169393 -142614079 - L1P LINE L1 -1947 4199 4011 4258 149 15 8 chr11 6169394 6170118 -142613354 + L1PA16 LINE L1 5438 6166 0 28 29 0 0 chr11 6170740 6170775 -142612697 + AT_rich Low_complexity Low_complexity 1 35 0 457 393 85 22 chr11 6172426 6172874 -142610598 - L3 LINE CR1 -5 1572 1097 693 237 78 41 chr11 6173689 6173908 -142609564 + L2 LINE L2 600 826 -2488 374 246 53 18 chr11 6173908 6174022 -142609450 + MLT1G LTR MaLR 473 590 0 330 75 94 19 chr11 6174193 6174246 -142609226 - LTR67 LTR ERVL -1 556 500 245 279 99 70 chr11 6174279 6174451 -142609021 - LTR67 LTR ERVL -134 423 247 1856 178 43 0 chr11 6174470 6174818 -142608654 + L1MC3 LINE L1 7227 7589 -196 1197 139 21 72 chr11 6174844 6175081 -142608391 + AluJb SINE Alu 84 308 -4 417 30 45 15 chr11 6175094 6175161 -142608311 + (GAAA)n Simple_repeat Simple_repeat 4 72 0 576 178 36 115 chr11 6175162 6175415 -142608057 + L1MC3 LINE L1 7553 7785 0 490 306 60 50 chr11 6175591 6175989 -142607483 + L2 LINE L2 1957 2358 -956 5194 168 93 59 chr11 6179122 6179695 -142603777 - L1MC3 LINE L1 -35 7750 7198 250 163 0 0 chr11 6179695 6179738 -142603734 - MLT1F1 LTR MaLR -478 89 47 5194 168 93 59 chr11 6179738 6180397 -142603075 - L1MC3 LINE L1 -587 7198 6432 387 292 158 15 chr11 6180560 6180762 -142602710 - MIR SINE MIR -13 249 19 850 234 73 5 chr11 6180780 6180985 -142602487 - MER20 DNA MER1_type 0 219 1 225 313 49 86 chr11 6182610 6182773 -142600699 - L2 LINE L2 -473 2841 2685 917 192 106 0 chr11 6182785 6182983 -142600489 + MER58A DNA MER1_type 1 219 -5 2478 42 0 26 chr11 6183375 6183683 -142599789 + AluY SINE Alu 1 300 -11 408 206 49 0 chr11 6183686 6183788 -142599684 + L1MC5 LINE L1 7335 7441 -520 1026 247 113 43 chr11 6184249 6184719 -142598753 - MLT1D LTR MaLR 0 505 3 1433 231 130 47 chr11 6184846 6185421 -142598051 + L1MB5 LINE L1 347 969 -5573 5067 202 105 23 chr11 6185424 6188779 -142594693 + L1MB5 LINE L1 2965 6660 -12 250 356 89 53 chr11 6188792 6189185 -142594287 - L2 LINE L2 -2288 1026 620 183 217 87 0 chr11 6189255 6189301 -142594171 + L2 LINE L2 3223 3272 0 1589 166 10 41 chr11 6189823 6190118 -142593354 + AluJo SINE Alu 14 299 -13 1568 194 3 16 chr11 6190174 6190478 -142592994 - AluJo SINE Alu -12 300 1 295 333 97 14 chr11 6191211 6191355 -142592117 + MER5B DNA MER1_type 1 156 -22 180 341 61 8 chr11 6191829 6191961 -142591511 - L2 LINE L2 -1208 2106 1968 460 278 159 30 chr11 6192222 6192492 -142590980 - L2 LINE L2 -4 3309 3005 2876 129 27 43 chr11 6193963 6194476 -142588996 - LTR10B LTR ERV1 0 505 1 482 184 62 9 chr11 6194496 6194630 -142588842 + MER21B LTR ERV1 614 808 -123 287 257 27 0 chr11 6194703 6194777 -142588695 - MER77 LTR ERV1 -4 601 526 3068 165 96 33 chr11 6194781 6195090 -142588382 - LTR62 LTR ERVK -2 717 429 2385 121 32 69 chr11 6195090 6195594 -142587878 - LTR19A LTR ERV1 -1 485 1 3068 165 96 33 chr11 6195594 6195958 -142587514 - LTR62 LTR ERVK -290 429 1 1419 244 14 92 chr11 6195973 6196464 -142587008 - MER21B LTR ERV1 -396 467 15 2487 182 24 21 chr11 6196735 6197268 -142586204 - MER21B-int LTR ERV1 -61 4130 3596 4697 56 8 0 chr11 6197368 6197989 -142585483 - L1P LINE L1 -5514 632 7 21 0 0 0 chr11 6197996 6198017 -142585455 + AT_rich Low_complexity Low_complexity 1 21 0 2843 169 74 11 chr11 6200284 6200852 -142582620 + MER6A DNA MER2_type 2 605 0 1972 162 66 33 chr11 6201677 6202204 -142581268 - MLT2A2 LTR ERVL 0 554 1 195 219 55 55 chr11 6202429 6202502 -142580970 - L2 LINE L2 -469 2845 2773 205 167 0 30 chr11 6203050 6203116 -142580356 + (TA)n Simple_repeat Simple_repeat 2 65 0 287 237 37 52 chr11 6203252 6203387 -142580085 + L1ME LINE L1 5473 5605 -516 250 207 61 24 chr11 6204529 6204611 -142578861 - ERVL LTR ERVL -5062 702 618 493 273 105 40 chr11 6205116 6205542 -142577930 - LTR33 LTR ERVL -8 513 3 640 200 91 11 chr11 6205752 6205927 -142577545 + MER5A DNA MER1_type 1 189 0 7555 184 33 17 chr11 6206811 6209489 -142573983 + L1PA16 LINE L1 3456 6166 0 2254 92 20 0 chr11 6210826 6211120 -142572352 + AluSg SINE Alu 5 304 -6 331 92 154 0 chr11 6211124 6211189 -142572283 - MADE1 DNA Mariner 0 80 6 301 169 0 0 chr11 6211232 6211291 -142572181 + MER92B LTR ERV1 431 489 -147 1016 287 72 18 chr11 6211299 6211689 -142571783 + ERVL LTR ERVL 3282 3692 -2072 1335 134 45 0 chr11 6211705 6211928 -142571544 + LTR45B LTR ERV1 3 235 -254 384 244 134 46 chr11 6212316 6212704 -142570768 + MLT1E LTR MaLR 26 495 -54 2846 187 33 2 chr11 6213205 6213745 -142569727 + MER41D LTR ERV1 1 557 0 563 238 86 30 chr11 6213788 6214091 -142569381 - HAL1 LINE L1 -135 2372 2053 1063 191 10 5 chr11 6214131 6214330 -142569142 - MER82 DNA MER2_type 0 653 454 614 167 89 89 chr11 6214600 6214743 -142568729 + MIR SINE MIR 71 216 -46 2180 49 8 4 chr11 6214743 6215009 -142568463 + AluY SINE Alu 1 267 -44 614 167 89 89 chr11 6215009 6215045 -142568427 + MIR SINE MIR 215 250 -12 519 161 0 11 chr11 6215173 6215260 -142568212 - FLAM_A SINE Alu -15 127 42 349 216 123 56 chr11 6215565 6215727 -142567745 - L1ME4a LINE L1 -224 5897 5725 417 267 50 6 chr11 6215731 6215911 -142567561 - L1ME4a LINE L1 -450 5671 5484 1140 335 149 22 chr11 6216018 6217160 -142566312 + L2 LINE L2 1608 2894 -420 238 250 14 56 chr11 6217172 6217244 -142566228 - L2 LINE L2 -11 3302 3234 316 354 95 55 chr11 6217263 6217588 -142565884 + L2 LINE L2 2885 3222 -50 1217 197 94 0 chr11 6218072 6218316 -142565156 + AluJo SINE Alu 46 312 0 902 274 138 9 chr11 6218434 6218891 -142564581 - MLT1G1 LTR MaLR -7 588 73 292 276 39 31 chr11 6218919 6219046 -142564426 - MLT1G1-int LTR MaLR -1 1370 1243 214 206 111 0 chr11 6219291 6219354 -142564118 - L2 LINE L2 -944 2370 2301 22 0 0 0 chr11 6219480 6219502 -142563970 + AT_rich Low_complexity Low_complexity 1 22 0 35583 38 8 0 chr11 6219502 6224849 -142558623 - L1PA3 LINE L1 -3 6152 782 2011 90 77 64 chr11 6224949 6225360 -142558112 + LTR14B LTR ERVK 1 608 0 270 282 24 24 chr11 6225403 6225573 -142557899 + L1ME3A LINE L1 3776 3945 -2201 534 266 108 22 chr11 6225836 6226159 -142557313 + L1ME3A LINE L1 5618 5968 -202 1008 126 0 0 chr11 6226294 6226437 -142557035 + FLAM_C SINE Alu 1 143 0 478 159 34 0 chr11 6226444 6226532 -142556940 + AluSg/x SINE Alu 201 291 -18 689 76 0 0 chr11 6226699 6226791 -142556681 - AluY SINE Alu -10 301 210 2025 122 3 11 chr11 6226905 6227220 -142556252 + AluSx SINE Alu 1 313 0 390 304 87 38 chr11 6227391 6227657 -142555815 + L1M4 LINE L1 4681 4959 -1187 509 322 90 25 chr11 6227727 6227972 -142555500 - MIR SINE MIR 0 262 2 301 272 159 88 chr11 6228156 6228620 -142554852 + L1ME4a LINE L1 4736 5232 -914 305 306 45 37 chr11 6228675 6228809 -142554663 + L1ME4a LINE L1 5297 5431 -690 1671 127 0 12 chr11 6229099 6229358 -142554114 + AluSx SINE Alu 40 295 -17 341 224 121 0 chr11 6229364 6229480 -142553992 + L1ME4a LINE L1 5767 5896 -225 264 314 0 0 chr11 6229658 6229728 -142553744 - L2 LINE L2 0 3313 3244 227 329 0 0 chr11 6229784 6229869 -142553603 + (TA)n Simple_repeat Simple_repeat 2 86 0 2372 98 0 0 chr11 6230272 6230577 -142552895 - AluSx SINE Alu -6 306 2 5091 94 10 1 chr11 6231406 6232204 -142551268 - L1P LINE L1 -860 5286 4482 1897 168 0 0 chr11 6232333 6232624 -142550848 + AluJb SINE Alu 3 293 -19 1970 129 3 3 chr11 6233533 6233828 -142549644 - AluSx SINE Alu -17 295 1 1271 254 97 28 chr11 6233842 6234453 -142549019 + L1MC5 LINE L1 7261 7913 -48 590 295 58 45 chr11 6234536 6234933 -142548539 + MLT1J1 LTR MaLR 43 444 -2 291 242 30 0 chr11 6234942 6235008 -142548464 + L2 LINE L2 3188 3255 -17 311 266 125 23 chr11 6235164 6235292 -142548180 + L2 LINE L2 3170 3310 -3 22 35 0 0 chr11 6235880 6235909 -142547563 + AT_rich Low_complexity Low_complexity 1 29 0 835 226 78 46 chr11 6235912 6236129 -142547343 - MER58A DNA MER1_type 0 224 1 12922 38 4 1 chr11 6236650 6239001 -142544471 - L1PA5 LINE L1 0 6154 3791 6441 99 56 0 chr11 6239001 6239972 -142543500 - L1MA1 LINE L1 -7 6295 5271 826 214 124 19 chr11 6240555 6240809 -142542663 - MLT1D LTR MaLR -2 503 199 457 133 27 0 chr11 6240813 6240888 -142542584 + MLT1B LTR MaLR 1 77 -313 1318 164 96 40 chr11 6240888 6241138 -142542334 + Tigger7 DNA MER2_type 1 264 -469 590 167 0 10 chr11 6241143 6241239 -142542233 + Tigger7 DNA MER2_type 2392 2486 -1 * 1399 183 46 3 chr11 6241239 6241520 -142541952 + MLT1B LTR MaLR 75 367 -23 823 201 22 22 chr11 6241518 6241697 -142541775 - MSTD LTR MaLR -217 179 1 * 1077 192 43 33 chr11 6241901 6242177 -142541295 + L1ME2 LINE L1 5738 6016 -148 719 214 0 0 chr11 6242382 6242513 -142540959 + FLAM_C SINE Alu 1 131 -2 249 265 15 0 chr11 6242881 6242949 -142540523 + LTR50 LTR ERVL 1 69 -726 235 309 27 36 chr11 6242979 6243089 -142540383 + L1MC4 LINE L1 6912 7020 -1022 27 29 0 0 chr11 6243446 6243480 -142539992 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr11 6243547 6243568 -142539904 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr11 6243642 6243677 -142539795 + AT_rich Low_complexity Low_complexity 1 35 0 31 26 0 0 chr11 6244000 6244038 -142539434 + AT_rich Low_complexity Low_complexity 1 38 0 7675 22 2 0 chr11 6244359 6245967 -142537505 - L1PA3 LINE L1 -5 6150 4541 7122 21 0 0 chr11 6245967 6246825 -142536647 + L1P LINE L1 2453 3310 -2836 200 299 71 24 chr11 6246954 6247081 -142536391 + MIR SINE MIR 89 221 -41 295 279 36 73 chr11 6247158 6247323 -142536149 - MIR3 SINE MIR -40 168 10 181 216 0 0 chr11 6247713 6247750 -142535722 - MIR SINE MIR -223 39 3 195 292 92 77 chr11 6247764 6247894 -142535578 + L2 LINE L2 2941 3072 -200 1066 271 175 7 chr11 6248198 6248616 -142534856 + L2 LINE L2 2528 3012 -301 416 298 88 6 chr11 6248715 6248886 -142534586 - L1ME LINE L1 -460 5661 5477 650 152 95 25 chr11 6250344 6250502 -142532970 + MER53 DNA DNA 3 171 -18 230 224 0 35 chr11 6250615 6250673 -142532799 - HAL1b LINE L1 -628 720 665 239 254 82 30 chr11 6250793 6250927 -142532545 - HAL1 LINE L1 -944 1563 1423 243 245 98 37 chr11 6250974 6251137 -142532335 - HAL1 LINE L1 -1183 1324 1152 230 175 0 18 chr11 6254362 6254419 -142529053 + (TTCA)n Simple_repeat Simple_repeat 2 57 0 299 207 49 0 chr11 6254979 6255061 -142528411 + MLT1H LTR MaLR 464 549 0 267 256 64 48 chr11 6255726 6255851 -142527621 - MIR SINE MIR -48 214 88 277 345 101 0 chr11 6256125 6256264 -142527208 - MIR SINE MIR -62 200 48 39 80 0 0 chr11 6256529 6256617 -142526855 + AT_rich Low_complexity Low_complexity 1 88 0 22 56 0 0 chr11 6256751 6256787 -142526685 + AT_rich Low_complexity Low_complexity 1 36 0 326 283 44 28 chr11 6257007 6257082 -142526390 - L1MC4a LINE L1 -1913 5895 5823 2381 194 83 21 chr11 6257082 6257614 -142525858 + MLT1F1 LTR MaLR 1 565 -2 326 283 44 28 chr11 6257614 6257718 -142525754 - L1MC4a LINE L1 -1985 5823 5713 837 226 18 128 chr11 6258385 6258930 -142524542 - L1MC5 LINE L1 -738 7223 6739 45 0 0 0 chr11 6259963 6260008 -142523464 + AT_rich Low_complexity Low_complexity 1 45 0 975 294 97 53 chr11 6260024 6260800 -142522672 + L1MC/D LINE L1 2199 2939 -3207 1735 174 0 3 chr11 6260800 6261102 -142522370 + AluJb SINE Alu 1 301 0 6688 174 21 6 chr11 6261108 6263231 -142520241 + L1PA15 LINE L1 4015 6159 -6 975 294 97 53 chr11 6263231 6264463 -142519009 + L1MC/D LINE L1 2943 4304 -1842 356 276 39 64 chr11 6264792 6265075 -142518397 + L1P LINE L1 4759 5034 -1112 1209 272 96 38 chr11 6265468 6265967 -142517505 - MLT1F LTR MaLR -10 532 52 2560 42 0 0 chr11 6266067 6266378 -142517094 + L1P LINE L1 3474 3784 -2362 267 363 46 43 chr11 6266608 6266937 -142516535 + L1MC/D LINE L1 5254 5586 -2222 2104 112 7 3 chr11 6266937 6267232 -142516240 - AluSq SINE Alu -17 296 1 267 363 46 43 chr11 6267232 6267293 -142516179 + L1MC/D LINE L1 5586 5645 -2163 3943 66 10 2 chr11 6267422 6267937 -142515535 + L1PA7 LINE L1 5633 6151 -3 1150 245 75 39 chr11 6268050 6268245 -142515227 + L1MC4 LINE L1 3211 3398 -2748 1984 136 88 14 chr11 6268245 6268598 -142514874 - L1PA15 LINE L1 0 6165 5787 1150 245 75 39 chr11 6268598 6268884 -142514588 + L1MC4 LINE L1 3398 3709 -2437 752 245 97 7 chr11 6269078 6269368 -142514104 + L1MC4 LINE L1 4268 4583 -1563 1383 213 80 24 chr11 6270042 6270502 -142512970 + L1MC4 LINE L1 4572 5057 -1089 1550 209 98 106 chr11 6270506 6270851 -142512621 + L1MC4 LINE L1 5090 4705 -1441 379 271 122 27 chr11 6270851 6271039 -142512433 + MER63A DNA MER1_type 2 207 -3 1550 209 98 106 chr11 6271039 6271728 -142511744 + L1MC4 LINE L1 4704 5397 -749 268 255 50 93 chr11 6272176 6272295 -142511177 + MIR SINE MIR 33 147 -61 478 288 126 28 chr11 6273700 6273915 -142509557 + MIR SINE MIR 7 242 -20 335 269 127 30 chr11 6274548 6274682 -142508790 - L1PA15-16 LINE L1 -5559 1290 1144 228 260 95 47 chr11 6275122 6275291 -142508181 + L1MCc LINE L1 1183 1359 -5064 27 62 0 0 chr11 6275388 6275436 -142508036 + AT_rich Low_complexity Low_complexity 1 48 0 72 96 0 0 chr11 6275533 6275752 -142507720 + AT_rich Low_complexity Low_complexity 1 219 0 208 187 41 0 chr11 6275752 6275875 -142507597 + (TA)n Simple_repeat Simple_repeat 1 128 0 1936 169 82 17 chr11 6275929 6276331 -142507141 - MSTA LTR MaLR 0 428 1 259 246 88 18 chr11 6276355 6276469 -142507003 + L1MCc LINE L1 1952 2073 -5049 523 322 93 58 chr11 6277168 6277565 -142505907 + HAL1 LINE L1 1124 1534 -973 328 313 36 7 chr11 6277752 6277955 -142505517 + L1MCc LINE L1 2831 3037 -3904 4665 33 0 0 chr11 6278388 6279279 -142504193 + L1PA3 LINE L1 5070 6155 0 413 164 277 66 chr11 6279280 6279536 -142503936 + L2 LINE L2 1405 1714 -1600 1196 198 50 4 chr11 6279544 6279782 -142503690 - MLT1A1 LTR MaLR 0 365 117 3028 248 85 58 chr11 6279882 6281042 -142502430 + L2 LINE L2 1723 2914 -400 992 281 82 54 chr11 6282632 6283020 -142500452 + L2 LINE L2 2894 3292 -21 344 250 93 47 chr11 6285107 6285279 -142498193 - L1ME3 LINE L1 -2 6160 5981 603 288 68 10 chr11 6285311 6285603 -142497869 - L1ME3 LINE L1 -268 5902 5594 403 219 172 0 chr11 6285638 6285789 -142497683 - L1MD3 LINE L1 -61 7934 7758 2719 188 102 24 chr11 6286030 6286779 -142496693 - L1MC3 LINE L1 -273 7512 6706 1799 130 7 40 chr11 6287290 6287427 -142496045 + AluSx SINE Alu 1 141 -171 279 0 0 0 chr11 6287427 6287458 -142496014 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1799 130 7 40 chr11 6287458 6287620 -142495852 + AluSx SINE Alu 141 290 -22 842 214 24 29 chr11 6287662 6287872 -142495600 + MER20 DNA MER1_type 7 215 -4 254 250 158 0 chr11 6288236 6288356 -142495116 + MIR SINE MIR 69 207 -55 290 268 134 0 chr11 6288860 6288942 -142494530 - MIR SINE MIR -58 204 112 * 406 333 159 17 chr11 6288940 6289349 -142494123 - L2 LINE L2 -1381 1933 1467 228 350 50 0 chr11 6289752 6289832 -142493640 + MIR SINE MIR 20 103 -159 194 333 133 54 chr11 6289843 6290341 -142493131 - L2 LINE L2 -2238 1076 540 307 322 82 12 chr11 6290451 6290622 -142492850 - MIR SINE MIR -21 241 59 195 42 0 0 chr11 6291645 6291669 -142491803 + (TA)n Simple_repeat Simple_repeat 1 24 0 1633 144 35 75 chr11 6292499 6292846 -142490626 + MER1B DNA MER1_type 1 333 -6 274 229 0 0 chr11 6293382 6293443 -142490029 - L1M4 LINE L1 -1363 4783 4723 239 235 0 0 chr11 6293627 6293678 -142489794 - L1ME4a LINE L1 -87 6034 5984 196 307 67 0 chr11 6293856 6293931 -142489541 - L2 LINE L2 0 3272 3193 31 0 0 0 chr11 6294505 6294536 -142488936 + AT_rich Low_complexity Low_complexity 1 31 0 455 269 66 48 chr11 6296363 6296590 -142486882 - LTR16A LTR ERVL -189 261 31 459 312 88 6 chr11 6297166 6297336 -142486136 - MIR SINE MIR 0 262 79 250 265 103 0 chr11 6297777 6297845 -142485627 + L2 LINE L2 3149 3223 -49 187 79 53 0 chr11 6298023 6298061 -142485411 + (TA)n Simple_repeat Simple_repeat 1 40 0 534 319 58 9 chr11 6298079 6298305 -142485167 - MIR SINE MIR -20 242 6 314 313 10 30 chr11 6298451 6298550 -142484922 - MIR SINE MIR -115 147 51 227 380 78 7 chr11 6298580 6298722 -142484750 - L3 LINE CR1 -234 1343 1192 2295 82 0 23 chr11 6301336 6301641 -142481831 - AluSc SINE Alu -11 298 1 2089 123 7 10 chr11 6302071 6302372 -142481100 + AluSx SINE Alu 1 300 -12 36 53 0 0 chr11 6303098 6303155 -142480317 + AT_rich Low_complexity Low_complexity 1 57 0 6299 127 20 14 chr11 6303314 6304791 -142478681 - L1MA3 LINE L1 0 6305 4823 525 43 0 0 chr11 6306350 6306419 -142477053 + L1M1 LINE L1 5723 5791 -513 322 338 94 57 chr11 6308243 6308471 -142475001 - MIR SINE MIR -2 260 23 275 318 141 5 chr11 6308526 6308724 -142474748 - L1ME LINE L1 -453 5668 5444 33 73 0 0 chr11 6308822 6308890 -142474582 + AT_rich Low_complexity Low_complexity 1 68 0 21 0 0 0 chr11 6312462 6312483 -142470989 + AT_rich Low_complexity Low_complexity 1 21 0 1468 181 148 48 chr11 6312834 6313253 -142470219 - LTR40c LTR ERVL 0 465 5 3605 236 67 40 chr11 6313257 6314346 -142469126 - HERVL40 LTR ERVL 0 5530 4413 412 297 115 50 chr11 6314531 6315312 -142468160 - L1ME LINE L1 -1274 4872 4041 7371 130 43 5 chr11 6315366 6317195 -142466277 - L1PA6 LINE L1 0 6154 4255 943 276 140 23 chr11 6317199 6318198 -142465274 - L1ME LINE L1 -2280 3866 2751 1250 206 39 31 chr11 6318267 6318553 -142464919 - AluJo SINE Alu -22 290 3 308 300 93 0 chr11 6318633 6318773 -142464699 - L1ME LINE L1 -3576 2570 2418 2247 129 0 0 chr11 6319217 6319528 -142463944 - AluSx SINE Alu -1 311 1 778 265 57 33 chr11 6320219 6320464 -142463008 + MIR SINE MIR 1 251 -11 207 167 0 0 chr11 6321244 6321280 -142462192 + (CATA)n Simple_repeat Simple_repeat 2 37 0 483 361 17 11 chr11 6321611 6321791 -142461681 + MER5A DNA MER1_type 8 188 -1 1117 221 32 4 chr11 6321970 6322223 -142461249 - MLT1H1 LTR MaLR 0 555 296 1546 252 143 26 chr11 6322238 6322852 -142460620 - MER50 LTR ERV1 -23 711 26 344 278 87 17 chr11 6322852 6322967 -142460505 - MER50 LTR ERV1 -611 123 1 403 303 98 15 chr11 6322998 6323200 -142460272 - MLT1H1 LTR MaLR -348 219 1 3099 207 59 23 chr11 6323307 6324050 -142459422 - MER21B LTR ERV1 -62 801 32 2965 146 49 12 chr11 6324574 6325144 -142458328 - LTR59 LTR ERV1 -6 591 1 344 303 112 6 chr11 6325163 6325391 -142458081 + L1M4 LINE L1 3691 3949 -2197 568 209 115 0 chr11 6326015 6326163 -142457309 + MER96B DNA MER1_type? 253 417 0 363 285 124 0 chr11 6326230 6326416 -142457056 - L1M4 LINE L1 -2938 3208 3000 562 289 93 50 chr11 6326416 6326780 -142456692 + L2 LINE L2 2934 3313 0 2153 131 73 14 chr11 6327445 6327789 -142455683 - THE1B LTR MaLR 0 364 1 1171 102 71 31 chr11 6327801 6328026 -142455446 + L1MB2 LINE L1 5938 6171 0 196 148 33 33 chr11 6328026 6328061 -142455411 + (TTAAA)n Simple_repeat Simple_repeat 2 39 -23 2497 84 0 0 chr11 6328061 6328372 -142455100 + AluY SINE Alu 1 311 0 196 148 33 33 chr11 6328372 6328397 -142455075 + (TTAAA)n Simple_repeat Simple_repeat 38 62 0 1402 94 11 0 chr11 6328412 6328593 -142454879 + AluSq SINE Alu 1 183 -130 1707 161 42 7 chr11 6328699 6328985 -142454487 - AluJo SINE Alu -16 296 1 659 204 28 99 chr11 6329016 6329134 -142454338 - L1ME2 LINE L1 -169 5995 5870 2350 98 10 0 chr11 6329134 6329439 -142454033 - AluSx SINE Alu -4 308 1 659 204 28 99 chr11 6329439 6329604 -142453868 - L1ME2 LINE L1 -294 5870 5732 314 240 104 48 chr11 6381225 6381350 -142402122 + HAL1 LINE L1 1 132 -2375 1455 150 29 60 chr11 6381831 6381913 -142401559 - MLT1F1 LTR MaLR 0 595 512 2397 93 3 0 chr11 6381913 6382223 -142401249 - AluSp SINE Alu -2 311 1 1455 150 29 60 chr11 6382223 6382423 -142401049 - MLT1F1 LTR MaLR -83 512 294 416 270 18 49 chr11 6382687 6382850 -142400622 - Charlie8 DNA MER1_type -2201 216 59 332 339 48 16 chr11 6382894 6383018 -142400454 + HAL1 LINE L1 754 881 -1626 80 63 0 0 chr11 6383496 6383639 -142399833 + AT_rich Low_complexity Low_complexity 1 143 0 328 164 60 0 chr11 6384169 6384236 -142399236 + MIR SINE MIR 24 94 -168 229 355 21 0 chr11 6385304 6385493 -142397979 - L1M4 LINE L1 -3549 2597 2405 312 286 9 0 chr11 6385504 6385616 -142397856 + L1ME3A LINE L1 5802 5914 -250 309 266 29 86 chr11 6385694 6385833 -142397639 + L1ME3A LINE L1 5963 6093 -77 538 275 68 68 chr11 6386225 6386476 -142396996 - MIR SINE MIR 0 262 12 189 0 0 0 chr11 6386884 6386905 -142396567 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 214 203 0 109 chr11 6387091 6387155 -142396317 + L2 LINE L2 3255 3311 -2 575 190 78 0 chr11 6387366 6387482 -142395990 + MLT2B1 LTR ERVL 2 126 -394 915 258 154 20 chr11 6387761 6388059 -142395413 + MLT2B1 LTR ERVL 129 466 -54 238 50 50 0 chr11 6388148 6388188 -142395284 + (TA)n Simple_repeat Simple_repeat 2 43 0 315 0 0 0 chr11 6388191 6388226 -142395246 + (CA)n Simple_repeat Simple_repeat 2 36 0 1599 163 8 127 chr11 6388237 6388630 -142394842 + MER7A DNA MER2_type 1 344 -2 386 61 0 0 chr11 6388640 6388689 -142394783 + MLT2B1 LTR ERVL 472 520 0 242 319 52 43 chr11 6389429 6389545 -142393927 - L2 LINE L2 -6 3266 3150 1116 286 79 44 chr11 6389863 6390021 -142393451 - L2 LINE L2 0 3313 3162 353 32 63 0 chr11 6390021 6390084 -142393388 + (TA)n Simple_repeat Simple_repeat 2 68 0 1116 286 79 44 chr11 6390084 6390665 -142392807 - L2 LINE L2 -151 3162 2472 6132 96 4 30 chr11 6392295 6393225 -142390247 - L1P LINE L1 -3504 2642 1737 * 10599 77 11 1 chr11 6393221 6395126 -142388346 + L1P3 LINE L1 3899 5819 -335 423 217 275 7 chr11 6396159 6396297 -142387175 + MER5A DNA MER1_type 9 183 -6 297 0 0 0 chr11 6396383 6396416 -142387056 + (TA)n Simple_repeat Simple_repeat 1 33 0 592 374 65 39 chr11 6396730 6397037 -142386435 + L2 LINE L2 2013 2311 -1003 1499 230 19 17 chr11 6397037 6397398 -142386074 + MLT1A1 LTR MaLR 2 363 -2 592 374 65 39 chr11 6397398 6397817 -142385655 + L2 LINE L2 2311 2758 -556 5073 217 65 41 chr11 6398354 6398493 -142384979 + L1MC4 LINE L1 6490 6624 -1418 201 39 0 0 chr11 6398493 6398519 -142384953 + (CA)n Simple_repeat Simple_repeat 2 27 0 5073 217 65 41 chr11 6398519 6399895 -142383577 + L1MC4 LINE L1 6624 8041 -1 664 296 79 38 chr11 6400029 6400269 -142383203 + MIR SINE MIR 3 252 -10 552 288 64 38 chr11 6400878 6401114 -142382358 + MIR SINE MIR 1 242 -20 28 71 0 0 chr11 6401243 6401299 -142382173 + AT_rich Low_complexity Low_complexity 1 56 0 988 173 9 33 chr11 6401352 6401566 -142381906 - L1MD1 LINE L1 -248 6388 6180 1945 145 3 0 chr11 6401675 6401978 -142381494 - AluSx SINE Alu -8 304 1 8512 210 64 40 chr11 6401979 6405857 -142377615 - L1MD1 LINE L1 -455 6181 2399 414 0 0 0 chr11 6405857 6405903 -142377569 + (TA)n Simple_repeat Simple_repeat 1 46 0 8582 38 0 20 chr11 6405904 6407760 -142375712 - L1PA5 LINE L1 -7 6147 4313 8512 210 64 40 chr11 6407760 6408543 -142374929 - L1MD1 LINE L1 -4236 2400 1391 22 56 0 0 chr11 6409145 6409181 -142374291 + AT_rich Low_complexity Low_complexity 1 36 0 2139 116 3 17 chr11 6409733 6410034 -142373438 + AluSx SINE Alu 1 297 -15 207 318 118 0 chr11 6410192 6410277 -142373195 + L2 LINE L2 2764 2858 -456 450 367 91 39 chr11 6410520 6411085 -142372387 - L2 LINE L2 -213 3059 2469 229 323 16 0 chr11 6411231 6411293 -142372179 + L2 LINE L2 3186 3248 -24 280 206 16 63 chr11 6412007 6412070 -142371402 + MLT1F LTR MaLR 1 60 -482 1762 180 0 3 chr11 6412087 6412370 -142371102 - AluJo SINE Alu -30 282 1 560 294 0 12 chr11 6412373 6412536 -142370936 + MLT1F LTR MaLR 49 209 -333 1130 65 13 0 chr11 6412639 6412792 -142370680 + L1PA7 LINE L1 5929 6083 -71 1001 176 38 0 chr11 6412832 6413042 -142370430 - L1MD3 LINE L1 -1 7994 7777 506 269 59 0 chr11 6413581 6413700 -142369772 - MER5A DNA MER1_type -62 127 2 431 235 18 71 chr11 6413701 6413871 -142369601 - L1MC5 LINE L1 -876 7085 6925 * 771 255 0 59 chr11 6413867 6414106 -142369366 - L1MC4 LINE L1 -866 7002 6718 614 297 76 10 chr11 6414348 6414651 -142368821 - L1ME4a LINE L1 -269 5852 5530 2460 37 0 10 chr11 6415199 6415493 -142367979 - AluY SINE Alu -20 291 1 665 310 162 18 chr11 6415706 6416093 -142367379 + L2 LINE L2 2687 3127 -186 402 298 121 24 chr11 6416228 6416352 -142367120 + L2 LINE L2 3177 3312 -1 443 215 75 0 chr11 6416487 6416594 -142366878 - MIR SINE MIR -50 212 98 527 231 52 29 chr11 6417534 6417707 -142365765 + L2 LINE L2 2173 2349 -965 508 270 166 43 chr11 6417702 6417980 -142365492 - L2 LINE L2 0 3313 3002 * 433 308 160 0 chr11 6418344 6418500 -142364972 - MER5A DNA MER1_type 0 189 9 270 291 100 18 chr11 6418751 6418861 -142364611 - MIR SINE MIR -108 154 36 187 352 110 11 chr11 6419212 6419303 -142364169 + L2 LINE L2 3169 3268 -4 2086 115 3 0 chr11 6419529 6419816 -142363656 - AluSg SINE Alu -22 288 1 318 306 58 16 chr11 6419906 6420027 -142363445 + MIR SINE MIR 76 201 -61 685 265 85 36 chr11 6420873 6421281 -142362191 + MLT1H LTR MaLR 13 549 0 2607 55 0 0 chr11 6421988 6422295 -142361177 + AluY SINE Alu 1 307 -4 180 0 0 0 chr11 6422295 6422315 -142361157 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 274 376 11 0 chr11 6422965 6423058 -142360414 + LTR67 LTR ERVL 97 190 -367 289 164 36 0 chr11 6423329 6423384 -142360088 + LTR33A LTR ERVL 444 500 -23 201 226 32 0 chr11 6423773 6423835 -142359637 + (TA)n Simple_repeat Simple_repeat 2 65 0 7956 169 53 51 chr11 6424431 6426245 -142357227 + L1MC3 LINE L1 5968 7785 0 1458 64 0 16 chr11 6426391 6426602 -142356870 + AluSq SINE Alu 112 313 0 838 217 87 129 chr11 6426602 6427504 -142355968 + L1MC5 LINE L1 7049 7912 -49 348 218 0 0 chr11 6427537 6427624 -142355848 + (TA)n Simple_repeat Simple_repeat 1 87 0 1434 249 78 11 chr11 6427631 6428005 -142355467 - LTR16A LTR ERVL 0 450 52 1812 169 60 69 chr11 6429178 6429648 -142353824 - MER31B LTR ERV1 0 661 1 584 316 65 71 chr11 6429922 6430371 -142353101 + L2 LINE L2 2827 3272 0 21 0 0 31 chr11 6431185 6431196 -142352276 + AT_rich Low_complexity Low_complexity 1 11 -20 2072 58 11 0 chr11 6431196 6431470 -142352002 - L1PA8 LINE L1 -10 6162 5886 21 0 0 31 chr11 6431470 6431490 -142351982 + AT_rich Low_complexity Low_complexity 11 31 0 892 315 86 47 chr11 6431516 6432307 -142351165 - HAL1 LINE L1 -1590 917 96 1514 257 79 82 chr11 6432401 6432717 -142350755 - L1MC4 LINE L1 0 8042 7727 2414 88 0 7 chr11 6432717 6433023 -142350449 + AluSg SINE Alu 3 306 -4 1514 257 79 82 chr11 6433023 6433618 -142349854 - L1MC4 LINE L1 -315 7727 7132 4879 91 13 4 chr11 6433618 6434308 -142349164 - L1PA16 LINE L1 -11 6155 5460 1514 257 79 82 chr11 6434308 6435611 -142347861 - L1MC4 LINE L1 -910 7132 5842 2071 114 17 3 chr11 6435611 6435925 -142347547 + AluSx SINE Alu 1 312 0 1514 257 79 82 chr11 6435925 6436207 -142347265 - L1MC4 LINE L1 -2200 5842 5561 4657 51 20 3 chr11 6436295 6436883 -142346589 + L1PA7 LINE L1 5556 6153 -1 1480 226 86 47 chr11 6438792 6439278 -142344194 + L1M1 LINE L1 12 516 -7049 * 5131 31 0 6 chr11 6439243 6439878 -142343594 - L1PA3 LINE L1 -3279 2867 2237 21276 26 9 0 chr11 6439878 6443181 -142340291 + L1PA3 LINE L1 2841 6152 -3 337 154 0 0 chr11 6443195 6443260 -142340212 + L1PA5 LINE L1 6084 6148 -6 17745 148 34 12 chr11 6443287 6446241 -142337231 + L1M1 LINE L1 502 3521 -4044 2128 85 0 22 chr11 6446253 6446571 -142336901 + L1MA1 LINE L1 5888 6198 -104 22 0 0 0 chr11 6447801 6447823 -142335649 + AT_rich Low_complexity Low_complexity 1 22 0 1350 153 138 89 chr11 6447968 6448142 -142335330 - Charlie1b DNA MER1_type -2238 523 359 4463 136 20 8 chr11 6448142 6448908 -142334564 - L1MA5 LINE L1 -2 6298 5524 1350 153 138 89 chr11 6448908 6449183 -142334289 - Charlie1b DNA MER1_type -2402 359 52 212 336 143 0 chr11 6449269 6449388 -142334084 + MIR SINE MIR 127 262 0 30 34 0 34 chr11 6450029 6450065 -142333407 + AT_rich Low_complexity Low_complexity 1 36 -21 2874 0 0 0 chr11 6450065 6450372 -142333100 - AluY SINE Alu -4 307 1 30 34 0 34 chr11 6450372 6450394 -142333078 + AT_rich Low_complexity Low_complexity 36 57 0 2185 106 61 35 chr11 6450394 6450771 -142332701 - L1PA16 LINE L1 -6 6160 5774 2100 109 12 34 chr11 6450865 6451185 -142332287 + AluSq SINE Alu 1 313 0 278 250 42 65 chr11 6451318 6451486 -142331986 + L1MEc LINE L1 1399 1562 -4834 22 35 0 0 chr11 6452011 6452040 -142331432 + AT_rich Low_complexity Low_complexity 1 29 0 2210 118 6 13 chr11 6452259 6452573 -142330899 + AluSx SINE Alu 1 312 0 1356 191 93 17 chr11 6452587 6452932 -142330540 + L1M4 LINE L1 4101 4471 -1675 * 1518 227 41 49 chr11 6452917 6453449 -142330023 + L1M4 LINE L1 4747 5274 -872 341 343 7 7 chr11 6453563 6453709 -142329763 + L1M4 LINE L1 4557 4702 -1444 21 0 0 0 chr11 6453840 6453861 -142329611 + AT_rich Low_complexity Low_complexity 1 21 0 3989 164 44 16 chr11 6454237 6454684 -142328788 - L1MA9 LINE L1 -59 6253 5771 2065 112 0 26 chr11 6454684 6454987 -142328485 - AluSx SINE Alu -17 295 1 3989 164 44 16 chr11 6454987 6455354 -142328118 - L1MA9 LINE L1 -541 5771 5416 5141 70 14 0 chr11 6455540 6456207 -142327265 + L1PA8 LINE L1 5488 6163 -9 1189 274 34 62 chr11 6456853 6457383 -142326089 + MER69 DNA AcHobo 697 1211 -1315 1092 202 56 50 chr11 6457386 6457567 -142325905 + MER69 DNA AcHobo 2128 2307 -219 1376 163 48 0 chr11 6457567 6457819 -142325653 + L1PA16 LINE L1 5893 6156 -10 1092 202 56 50 chr11 6457819 6458033 -142325439 + MER69 DNA AcHobo 2307 2525 -1 262 339 51 0 chr11 6458877 6458995 -142324477 - L3 LINE CR1 -17 1560 1437 361 272 120 13 chr11 6459099 6459257 -142324215 + L1M4 LINE L1 4922 5096 -1050 453 337 32 40 chr11 6459274 6459526 -142323946 - MIR SINE MIR -6 256 7 261 239 113 7 chr11 6459529 6459671 -142323801 + L1M4 LINE L1 5104 5260 -886 374 378 54 14 chr11 6459775 6459997 -142323475 + L2 LINE L2 2868 3098 -215 549 264 147 78 chr11 6460251 6460687 -142322785 + MLT1J LTR MaLR 9 474 -37 569 297 109 32 chr11 6460884 6461295 -142322177 - L1ME LINE L1 -367 5797 5355 21 36 0 0 chr11 6461312 6461340 -142322132 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr11 6461491 6461527 -142321945 + AT_rich Low_complexity Low_complexity 1 36 0 487 288 161 35 chr11 6461752 6462175 -142321297 + L1MC4 LINE L1 4226 4701 -1445 22 0 0 0 chr11 6462230 6462252 -142321220 + AT_rich Low_complexity Low_complexity 1 22 0 455 291 200 15 chr11 6462676 6463151 -142320321 + L1MC4 LINE L1 5255 5817 -1991 2145 132 0 0 chr11 6463450 6463745 -142319727 - AluSx SINE Alu -15 297 3 1671 240 52 75 chr11 6463859 6464491 -142318981 - L1ME3A LINE L1 -9 6161 5547 1881 164 106 13 chr11 6464491 6464870 -142318602 + MLT2D LTR ERVL 1 414 0 1671 240 52 75 chr11 6464870 6464970 -142318502 - L1ME3A LINE L1 -623 5547 5446 447 286 117 34 chr11 6465000 6465527 -142317945 - L1M3 LINE L1 -329 5839 5255 582 311 53 19 chr11 6465583 6465789 -142317683 + MIR SINE MIR 2 214 -48 389 326 117 25 chr11 6465829 6466231 -142317241 - L1M3 LINE L1 -941 5205 4767 301 279 0 0 chr11 6466547 6466608 -142316864 + MER91B DNA MER1_type 1 61 -129 517 277 32 0 chr11 6466896 6467051 -142316421 + MLT1J1 LTR MaLR 1 160 -286 407 234 28 19 chr11 6467087 6467194 -142316278 + MER21B LTR ERV1 1 108 -755 1237 204 29 32 chr11 6467294 6467573 -142315899 + MER21B LTR ERV1 475 752 -111 495 285 140 10 chr11 6467601 6467801 -142315671 + MLT1J2 LTR MaLR 196 421 -29 241 405 72 27 chr11 6468302 6468675 -142314797 + L2 LINE L2 2850 3239 -33 188 271 0 0 chr11 6468816 6468864 -142314608 + L2 LINE L2 3263 3310 -3 747 245 164 2 chr11 6469316 6469751 -142313721 + L1MC4 LINE L1 6468 7072 -970 1066 278 16 0 chr11 6469753 6470066 -142313406 + L1MC4 LINE L1 7239 7556 -486 1797 140 52 3 chr11 6470066 6470352 -142313120 - AluJb SINE Alu -12 300 1 21 57 0 0 chr11 6470872 6470907 -142312565 + AT_rich Low_complexity Low_complexity 1 35 0 526 12 60 0 chr11 6471695 6471778 -142311694 + (TA)n Simple_repeat Simple_repeat 2 89 0 183 42 0 0 chr11 6472529 6472553 -142310919 + (CA)n Simple_repeat Simple_repeat 1 24 0 393 260 122 8 chr11 6473324 6473447 -142310025 + MIR SINE MIR 53 189 -73 3827 271 97 36 chr11 6473453 6475084 -142308388 - L2 LINE L2 0 3313 1551 783 254 15 5 chr11 6475084 6475289 -142308183 - MER63A DNA MER1_type -3 207 1 3827 271 97 36 chr11 6475289 6475402 -142308070 - L2 LINE L2 -1762 1551 1446 25 75 0 0 chr11 6475699 6475752 -142307720 + AT_rich Low_complexity Low_complexity 1 53 0 398 323 124 33 chr11 6475952 6476553 -142306919 + L2 LINE L2 1921 2665 -649 444 280 35 30 chr11 6476609 6476809 -142306663 + L1ME4a LINE L1 5635 5835 -286 350 254 88 18 chr11 6477881 6477995 -142305477 + L2 LINE L2 3151 3272 0 330 270 204 26 chr11 6478305 6478457 -142305015 + L2 LINE L2 2236 2414 -900 623 272 94 6 chr11 6478691 6478741 -142304731 - MIR SINE MIR -1 261 217 184 59 59 0 chr11 6478741 6478775 -142304697 + (TA)n Simple_repeat Simple_repeat 1 36 0 623 272 94 6 chr11 6478775 6478904 -142304568 - MIR SINE MIR -45 217 66 522 325 101 18 chr11 6479138 6479699 -142303773 - HAL1b LINE L1 -682 1686 361 698 365 100 9 chr11 6480948 6481509 -142301963 - L2 LINE L2 -338 2976 2365 920 346 64 10 chr11 6482331 6482739 -142300733 + LTR16A LTR ERVL 16 445 -5 29 28 0 0 chr11 6483266 6483302 -142300170 + AT_rich Low_complexity Low_complexity 1 36 0 291 270 92 46 chr11 6485685 6485859 -142297613 + MLT1K LTR MaLR 174 355 -233 507 194 0 43 chr11 6485965 6486151 -142297321 + GA-rich Low_complexity Low_complexity 1 178 0 182 130 39 26 chr11 6487122 6487199 -142296273 + (TTATA)n Simple_repeat Simple_repeat 3 80 0 487 341 59 15 chr11 6487226 6487634 -142295838 - L1ME LINE L1 -475 5687 5262 1569 92 8 0 chr11 6487716 6487955 -142295517 - L1MA5 LINE L1 -2 6298 6058 2423 45 0 3 chr11 6488024 6488316 -142295156 - AluY SINE Alu -20 291 1 184 298 85 0 chr11 6488686 6488733 -142294739 + L2 LINE L2 3168 3218 -54 667 62 21 0 chr11 6489086 6489183 -142294289 + AluY SINE Alu 213 311 0 300 313 45 18 chr11 6489518 6489630 -142293842 + L2 LINE L2 3152 3266 -6 32 57 0 0 chr11 6489692 6489745 -142293727 + AT_rich Low_complexity Low_complexity 1 53 0 985 145 0 13 chr11 6490120 6490279 -142293193 - FRAM SINE Alu -9 167 11 1427 328 76 57 chr11 6490457 6492157 -142291315 - L1ME LINE L1 -722 5442 3699 319 302 24 40 chr11 6492256 6492382 -142291090 + L2 LINE L2 3190 3313 0 451 354 62 11 chr11 6492522 6492796 -142290676 - HAL1b LINE L1 -759 589 302 1637 264 16 75 chr11 6493820 6494450 -142289022 + MLT1E LTR MaLR 1 593 0 213 39 0 0 chr11 6494809 6494835 -142288637 + (T)n Simple_repeat Simple_repeat 1 26 0 6530 16 10 1 chr11 6494871 6495667 -142287805 - L1HS LINE L1 0 6155 5353 349 23 0 0 chr11 6495664 6495707 -142287765 + L1P LINE L1 1945 1987 -4159 * 876 238 63 0 chr11 6496179 6496385 -142287087 + MIR SINE MIR 1 219 -43 207 0 0 0 chr11 6496922 6496945 -142286527 + (CAAAAA)n Simple_repeat Simple_repeat 1 23 0 231 315 94 31 chr11 6497574 6497701 -142285771 - L2 LINE L2 -2 3270 3136 180 0 0 0 chr11 6498460 6498480 -142284992 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 637 292 31 122 chr11 6498668 6499434 -142284038 - L2 LINE L2 -1 3312 2616 227 229 38 84 chr11 6499632 6499763 -142283709 + LTR67 LTR ERVL 6 130 -427 * 1679 239 69 58 chr11 6499707 6500227 -142283245 + MLT1F LTR MaLR 7 532 -10 391 334 89 38 chr11 6500263 6500577 -142282895 + LTR67 LTR ERVL 117 446 -111 264 255 28 9 chr11 6500656 6500762 -142282710 - MLT1L LTR MaLR -16 599 492 586 296 11 0 chr11 6500885 6501064 -142282408 - MLT1L LTR MaLR -345 270 90 1036 309 146 6 chr11 6501143 6501664 -142281808 - L2 LINE L2 -683 2631 2038 189 0 0 0 chr11 6501898 6501919 -142281553 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 324 48 0 0 chr11 6502705 6502747 -142280725 + (CA)n Simple_repeat Simple_repeat 2 43 0 552 309 41 37 chr11 6503367 6503613 -142279859 + MIR SINE MIR 5 251 -11 709 261 77 18 chr11 6503833 6504055 -142279417 + MIR SINE MIR 14 248 -14 1973 142 3 0 chr11 6504262 6504568 -142278904 + AluSq SINE Alu 1 307 0 243 246 0 33 chr11 6504951 6505012 -142278460 + CT-rich Low_complexity Low_complexity 3 61 0 354 294 55 0 chr11 6506081 6506190 -142277282 + L3 LINE CR1 272 386 -1191 310 359 41 7 chr11 6506436 6506581 -142276891 + L3 LINE CR1 1067 1216 -361 431 253 116 50 chr11 6506596 6506837 -142276635 + MIR SINE MIR 2 258 -4 237 163 0 0 chr11 6506900 6506949 -142276523 + T-rich Low_complexity Low_complexity 1 49 0 1131 210 213 9 chr11 6507044 6507373 -142276099 - MSTD LTR MaLR 0 396 1 221 348 0 14 chr11 6508068 6508137 -142275335 + MIR SINE MIR 20 87 -175 459 252 122 22 chr11 6508139 6508361 -142275111 - MLT1H LTR MaLR 0 555 312 1030 196 14 9 chr11 6508375 6508594 -142274878 - MLT1A2 LTR MaLR 0 374 155 2457 122 3 0 chr11 6508603 6508972 -142274500 - L1PB1 LINE L1 -1 6150 5781 309 183 0 0 chr11 6508972 6509032 -142274440 + (TA)n Simple_repeat Simple_repeat 2 61 0 324 283 0 22 chr11 6509032 6509124 -142274348 + L1MC4 LINE L1 6614 6703 -1339 * 327 311 0 0 chr11 6509044 6509134 -142274338 - L1MC4 LINE L1 -1339 6703 6614 276 149 0 0 chr11 6509141 6509188 -142274284 + (TA)n Simple_repeat Simple_repeat 2 48 0 3613 131 6 4 chr11 6509188 6510092 -142273380 - L1P5 LINE L1 -360 5791 4888 2191 191 0 0 chr11 6510092 6510548 -142272924 + L1P5 LINE L1 4403 4858 -1288 517 164 207 7 chr11 6510553 6510693 -142272779 - MLT1A2 LTR MaLR -218 156 1 698 256 57 9 chr11 6510774 6510985 -142272487 - MLT1H LTR MaLR -326 223 3 288 293 50 0 chr11 6510988 6511087 -142272385 + MIR SINE MIR 86 189 -73 404 280 96 0 chr11 6511142 6511299 -142272173 - MIR SINE MIR -3 259 88 263 418 7 7 chr11 6511718 6511859 -142271613 + L2 LINE L2 2509 2649 -665 186 122 41 20 chr11 6512383 6512432 -142271040 + GA-rich Low_complexity Low_complexity 3 52 0 385 240 34 75 chr11 6512451 6512597 -142270875 + MIR SINE MIR 82 221 -41 306 0 0 0 chr11 6512597 6512631 -142270841 + (CA)n Simple_repeat Simple_repeat 2 35 0 243 169 68 34 chr11 6512682 6512741 -142270731 + L3 LINE CR1 1514 1574 -3 406 296 152 73 chr11 6513348 6514215 -142269257 - L1M2 LINE L1 -5538 1311 550 1852 243 109 46 chr11 6516697 6517323 -142266149 - L2 LINE L2 -339 2975 2311 408 342 32 11 chr11 6517437 6517624 -142265848 - L3 LINE CR1 -176 1401 1211 416 222 193 22 chr11 6517789 6517924 -142265548 + MER5A DNA MER1_type 29 186 -3 258 279 51 13 chr11 6517941 6518020 -142265452 - MIR SINE MIR -70 138 57 * 560 316 113 42 chr11 6518015 6518428 -142265044 - L3 LINE CR1 -588 989 547 563 162 19 195 chr11 6518428 6518638 -142264834 + MER5B DNA MER1_type 4 176 -2 334 224 241 9 chr11 6520084 6520200 -142263272 + MIR SINE MIR 2 144 -118 408 161 69 0 chr11 6520392 6520479 -142262993 + MIR SINE MIR 68 160 -102 606 154 173 0 chr11 6520493 6520649 -142262823 - MER53 DNA DNA -6 183 1 197 333 118 0 chr11 6520650 6520752 -142262720 + MIR SINE MIR 149 262 0 219 410 38 0 chr11 6521593 6521698 -142261774 - L2 LINE L2 -8 3264 3156 4373 273 66 29 chr11 6522876 6524541 -142258931 - L2 LINE L2 -2 3311 1586 213 271 0 17 chr11 6524582 6524641 -142258831 - L2 LINE L2 -1075 2239 2182 1873 157 68 6 chr11 6524641 6524979 -142258493 - MLT1A1 LTR MaLR 0 365 7 4279 244 136 21 chr11 6524986 6526490 -142256982 - L2 LINE L2 -1129 2185 510 381 293 126 18 chr11 6526603 6526825 -142256647 - L2 LINE L2 -826 2488 2243 270 377 66 0 chr11 6526882 6526988 -142256484 + MER5B DNA MER1_type 2 114 -64 389 309 50 53 chr11 6529063 6529442 -142254030 + L1 LINE L1 2970 3347 -2799 280 209 110 11 chr11 6529751 6529842 -142253630 - L1ME LINE L1 -477 5644 5545 281 219 14 17 chr11 6529865 6529953 -142253519 + L1 LINE L1 3604 3690 -2456 23 0 0 0 chr11 6530123 6530146 -142253326 + AT_rich Low_complexity Low_complexity 1 23 0 1726 216 43 11 chr11 6530225 6530669 -142252803 - L1MB8 LINE L1 -7 6171 5714 670 284 67 69 chr11 6530894 6531370 -142252102 - MLT1J LTR MaLR -31 480 6 25 0 0 0 chr11 6531682 6531707 -142251765 + AT_rich Low_complexity Low_complexity 1 25 0 390 21 0 0 chr11 6532326 6532373 -142251099 + (CA)n Simple_repeat Simple_repeat 2 48 0 28 29 0 0 chr11 6532659 6532694 -142250778 + AT_rich Low_complexity Low_complexity 1 35 0 2212 102 0 0 chr11 6533067 6533374 -142250098 - AluY SINE Alu 0 307 1 512 280 63 21 chr11 6533544 6533687 -142249785 + MIR SINE MIR 23 171 -91 203 361 0 15 chr11 6533818 6533948 -142249524 + CT-rich Low_complexity Low_complexity 4 131 0 703 291 60 98 chr11 6534031 6534512 -142248960 - L2 LINE L2 -4 3268 2806 204 156 22 0 chr11 6534822 6534867 -142248605 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 2476 40 0 0 chr11 6535287 6535583 -142247889 + L1PA8 LINE L1 5874 6169 -3 2228 103 10 3 chr11 6535823 6536123 -142247349 - AluSx SINE Alu -10 302 1 568 317 204 24 chr11 6536716 6537293 -142246179 + L2 LINE L2 1709 2389 -925 490 209 243 46 chr11 6537266 6537529 -142245943 + L2 LINE L2 2932 3246 -67 * 507 353 55 36 chr11 6537625 6537988 -142245484 + L2 LINE L2 2417 2786 -528 311 313 139 72 chr11 6538087 6538271 -142245201 + L2 LINE L2 2918 3088 -184 2049 110 0 28 chr11 6538271 6538594 -142244878 + AluSg SINE Alu 1 315 0 311 313 139 72 chr11 6538594 6538740 -142244732 + L2 LINE L2 3088 3271 -1 2182 115 17 136 chr11 6539434 6539913 -142243559 - MSTC LTR MaLR -6 422 1 326 325 156 12 chr11 6540643 6540803 -142242669 + L3 LINE CR1 206 388 -1189 193 246 145 29 chr11 6541108 6541177 -142242295 - MER5A DNA MER1_type -67 122 46 * 325 323 0 11 chr11 6541118 6541211 -142242261 + MER5A DNA MER1_type 98 189 0 2591 203 44 32 chr11 6541559 6542235 -142241237 + MER63C DNA MER1_type 1 684 -246 763 197 19 110 chr11 6542313 6542577 -142240895 + MER63C DNA MER1_type 691 930 0 26 0 0 0 chr11 6544363 6544389 -142239083 + AT_rich Low_complexity Low_complexity 1 26 0 294 29 0 0 chr11 6544415 6544450 -142239022 + (CA)n Simple_repeat Simple_repeat 2 36 0 210 128 0 0 chr11 6544459 6544498 -142238974 + (GA)n Simple_repeat Simple_repeat 1 39 0 306 210 101 67 chr11 6544523 6544642 -142238830 - HAL1 LINE L1 -106 2401 2279 310 195 12 49 chr11 6544654 6544736 -142238736 - L1MC4 LINE L1 -1339 6703 6625 26 30 0 0 chr11 6545072 6545105 -142238367 + AT_rich Low_complexity Low_complexity 1 33 0 255 271 14 0 chr11 6545209 6545279 -142238193 + MIR SINE MIR 85 155 -107 776 271 121 16 chr11 6545841 6546294 -142237178 - HAL1 LINE L1 -761 1746 1246 2555 102 19 11 chr11 6546673 6547045 -142236427 - THE1C LTR MaLR 0 375 1 10050 114 52 5 chr11 6547045 6548553 -142234919 - THE1C-int LTR MaLR 0 1580 1 2537 87 11 8 chr11 6548558 6548927 -142234545 - THE1C LTR MaLR -5 370 1 1039 153 58 36 chr11 6550784 6551007 -142232465 + L1MB3 LINE L1 5949 6176 -7 779 303 25 8 chr11 6552342 6552779 -142230693 - LTR33 LTR ERVL 0 521 14 187 225 167 25 chr11 6553935 6554055 -142229417 - MIR3 SINE MIR -61 147 11 1150 175 0 11 chr11 6555460 6555779 -142227693 - MLT1A1 LTR MaLR 0 365 1 2302 173 23 17 chr11 6555779 6556247 -142227225 - MLT1A1-int LTR MaLR 0 1735 1214 3209 173 14 53 chr11 6556537 6557230 -142226242 - MLT1A1-int LTR MaLR -1069 666 1 244 282 167 0 chr11 6557348 6557426 -142226046 + L2 LINE L2 3201 3291 -22 301 355 161 0 chr11 6557655 6557810 -142225662 - MIR SINE MIR -77 185 6 183 205 0 0 chr11 6558048 6558087 -142225385 + CT-rich Low_complexity Low_complexity 4 42 0 226 122 0 0 chr11 6558106 6558155 -142225317 - L1MC1 LINE L1 -2 6331 6283 243 0 0 0 chr11 6558565 6558592 -142224880 + (TG)n Simple_repeat Simple_repeat 1 27 0 * 345 24 0 0 chr11 6558591 6558633 -142224839 + (GA)n Simple_repeat Simple_repeat 1 42 0 441 194 241 36 chr11 6558750 6559003 -142224469 - L1MC5 LINE L1 -32 7929 7625 894 244 148 46 chr11 6559067 6559784 -142223688 - HAL1 LINE L1 -628 1879 1090 594 196 98 25 chr11 6560959 6561122 -142222350 - MER91B DNA MER1_type -2 188 14 303 326 42 0 chr11 6561172 6561267 -142222205 - L2 LINE L2 -18 3254 3156 478 267 0 8 chr11 6561483 6561614 -142221858 - MER94 DNA DNA 0 134 5 236 324 0 0 chr11 6561872 6561940 -142221532 - MLT1I LTR MaLR -244 165 98 484 336 8 0 chr11 6563090 6563218 -142220254 + L2 LINE L2 3141 3269 -3 875 290 126 9 chr11 6563504 6563939 -142219533 + LTR16C LTR ERVL 1 486 -5 459 318 76 21 chr11 6565079 6565315 -142218157 - MIR SINE MIR 0 262 14 470 304 154 0 chr11 6565522 6565749 -142217723 + MIR SINE MIR 1 262 0 197 328 0 16 chr11 6567726 6567790 -142215682 - L3 LINE CR1 -3 1574 1512 741 319 57 15 chr11 6568033 6568437 -142215035 + L2 LINE L2 2862 3282 -31 2172 132 0 10 chr11 6571635 6571939 -142211533 - AluSx SINE Alu -11 301 1 2407 86 0 0 chr11 6571950 6572251 -142211221 - AluY SINE Alu -10 301 1 832 167 7 7 chr11 6572501 6572651 -142210821 + AluSp/q SINE Alu 161 310 -3 26 50 0 0 chr11 6574338 6574378 -142209094 + AT_rich Low_complexity Low_complexity 1 40 0 23 68 0 0 chr11 6577442 6577486 -142205986 + AT_rich Low_complexity Low_complexity 1 44 0 300 230 24 103 chr11 6577524 6577650 -142205822 - L1ME3 LINE L1 -93 6138 6023 401 277 115 49 chr11 6577807 6578258 -142205214 - L1ME3 LINE L1 -346 5885 5405 555 265 34 20 chr11 6578316 6578614 -142204858 - L1ME3 LINE L1 -884 5331 5030 1672 182 32 46 chr11 6578625 6578998 -142204474 - MLT1A2 LTR MaLR -6 368 1 557 262 89 52 chr11 6579102 6579583 -142203889 - L1ME3 LINE L1 -1315 4900 4402 2085 120 10 0 chr11 6579643 6579934 -142203538 - AluSq SINE Alu -19 294 1 616 275 27 8 chr11 6580054 6580312 -142203160 - L1ME3 LINE L1 -2259 3956 3694 291 62 0 0 chr11 6580480 6580563 -142202909 - Alu SINE Alu 0 336 254 268 233 31 70 chr11 6580618 6580747 -142202725 - L1ME3 LINE L1 -4738 1658 1535 309 349 120 5 chr11 6581094 6581286 -142202186 - L1ME3 LINE L1 -5840 365 152 311 384 90 35 chr11 6581608 6581897 -142201575 + L2 LINE L2 2967 3271 -1 1366 171 65 92 chr11 6582843 6583310 -142200162 - MER66A LTR ERV1 0 478 97 783 196 4 92 chr11 6583371 6583600 -142199872 + MER63A DNA MER1_type 1 209 -1 583 281 40 37 chr11 6584219 6584547 -142198925 - L1ME3A LINE L1 -221 5932 5604 1130 298 107 40 chr11 6584655 6585115 -142198357 - L1ME3A LINE L1 -1874 4255 3827 183 80 0 0 chr11 6585115 6585140 -142198332 + (TG)n Simple_repeat Simple_repeat 2 26 0 1130 298 107 40 chr11 6585140 6586171 -142197301 - L1ME3A LINE L1 -2302 3827 2664 11407 32 1 1 chr11 6586432 6587874 -142195598 - L1PA2 LINE L1 -1493 4653 3212 7915 8 0 4 chr11 6587874 6589432 -142194040 + L1PA2 LINE L1 4624 6155 0 261 308 22 11 chr11 6589454 6589636 -142193836 - L1ME3A LINE L1 -3853 2276 2093 21 36 0 0 chr11 6589644 6589672 -142193800 + AT_rich Low_complexity Low_complexity 1 28 0 628 273 90 17 chr11 6590308 6590689 -142192783 - L1MEd LINE L1 -4862 1257 908 1287 189 56 50 chr11 6591356 6591751 -142191721 + L1ME1 LINE L1 5644 6028 -138 186 396 36 0 chr11 6591913 6592024 -142191448 - L2 LINE L2 -1683 1631 1517 1849 94 0 0 chr11 6592025 6592258 -142191214 - AluSq SINE Alu -21 292 60 1255 100 6 0 chr11 6592258 6592418 -142191054 - AluSq SINE Alu -152 161 1 234 357 14 14 chr11 6592530 6592673 -142190799 + MER117 DNA MER1_type 2 144 -53 1350 143 0 63 chr11 6592815 6593053 -142190419 + AluJb SINE Alu 68 290 -22 1310 264 33 24 chr11 6593345 6593796 -142189676 - LTR16A1 LTR ERVL -2 455 1 589 307 126 69 chr11 6595103 6595686 -142187786 - L2 LINE L2 -6 3266 2656 2883 213 37 43 chr11 6595778 6596664 -142186808 - L1ME1 LINE L1 -4 6162 5282 * 18096 189 10 16 chr11 6596633 6601800 -142181672 - L1PA13 LINE L1 -5 7596 2471 2123 319 6 9 chr11 6601872 6602552 -142180920 - L1PA13 LINE L1 -5936 1645 968 2528 124 8 3 chr11 6602618 6602980 -142180492 + THE1B LTR MaLR 1 364 0 1929 164 40 11 chr11 6603124 6603478 -142179994 - THE1B LTR MaLR 0 364 1 11519 95 8 4 chr11 6603478 6605052 -142178420 - THE1B-int LTR MaLR 0 1580 1 2237 105 44 36 chr11 6605052 6605413 -142178059 - THE1B LTR MaLR 0 364 1 2474 209 63 37 chr11 6605545 6606251 -142177221 - L1M4 LINE L1 -803 5343 4610 306 0 0 0 chr11 6606251 6606285 -142177187 + (CA)n Simple_repeat Simple_repeat 2 35 0 2474 209 63 37 chr11 6606285 6606438 -142177034 - L1M4 LINE L1 -1536 4610 4462 1066 259 41 12 chr11 6606441 6606785 -142176687 - L1MEc LINE L1 -5999 397 44 1518 307 87 60 chr11 6606785 6607896 -142175576 - L2 LINE L2 -809 2505 1365 227 210 16 32 chr11 6608119 6608181 -142175291 - L1ME4a LINE L1 -82 6039 5979 2127 124 0 10 chr11 6608555 6608853 -142174619 - AluSq SINE Alu -18 295 1 261 0 0 0 chr11 6610007 6610036 -142173436 + (T)n Simple_repeat Simple_repeat 1 29 0 1072 129 72 5 chr11 6610501 6610694 -142172778 + L1MB4 LINE L1 5975 6180 0 237 33 0 0 chr11 6610697 6610727 -142172745 + (CA)n Simple_repeat Simple_repeat 2 31 0 405 285 136 56 chr11 6610977 6611191 -142172281 - MIR SINE MIR -29 233 3 282 167 15 30 chr11 6614191 6614257 -142169215 + Charlie7 DNA MER1_type 41 105 -2507 1822 230 127 44 chr11 6614379 6615087 -142168385 + LTR41 LTR ERVL 1 767 -6 382 147 100 73 chr11 6615097 6615247 -142168225 - Charlie7 DNA MER1_type -28 2584 2431 276 202 73 65 chr11 6615268 6615392 -142168080 - Charlie7 DNA MER1_type -1891 721 597 21 0 0 0 chr11 6615452 6615473 -142167999 + AT_rich Low_complexity Low_complexity 1 21 0 291 271 110 8 chr11 6615530 6615648 -142167824 + L2 LINE L2 2630 2759 -555 236 241 203 45 chr11 6616244 6616377 -142167095 + MIR SINE MIR 109 262 0 218 286 0 0 chr11 6616770 6616840 -142166632 + L2 LINE L2 2994 3063 -209 228 258 90 22 chr11 6617017 6617106 -142166366 - MIR3 SINE MIR -28 180 86 228 232 85 24 chr11 6617229 6617311 -142166161 + L2 LINE L2 3182 3268 -4 281 347 146 22 chr11 6618130 6618398 -142165074 - L2 LINE L2 0 3313 3013 271 367 31 56 chr11 6618411 6618607 -142164865 - L2 LINE L2 -458 2856 2666 341 295 37 29 chr11 6619028 6619272 -142164200 - L1MDa LINE L1 -1435 5105 4860 308 304 88 35 chr11 6619272 6619499 -142163973 - L2 LINE L2 -23 3290 3052 778 277 126 47 chr11 6619579 6620172 -142163300 - L1MDa LINE L1 -1776 4764 4066 8505 35 0 0 chr11 6620172 6621967 -142161505 - L1PA3 LINE L1 0 6155 4357 778 277 126 47 chr11 6621967 6622326 -142161146 - L1MDa LINE L1 -2474 4066 3737 435 314 61 10 chr11 6622574 6622982 -142160490 - L1MDa LINE L1 -3208 3332 2904 2008 139 33 0 chr11 6623403 6623752 -142159720 - AluSx SINE Alu 0 359 1 251 242 95 32 chr11 6624001 6624256 -142159216 - L1MDa LINE L1 -3827 2713 2446 252 0 0 0 chr11 6624267 6624295 -142159177 + (T)n Simple_repeat Simple_repeat 1 28 0 265 394 0 15 chr11 6624426 6624558 -142158914 + L2 LINE L2 2562 2691 -623 921 342 138 35 chr11 6624647 6625684 -142157788 - L2 LINE L2 -839 2475 1332 319 277 77 108 chr11 6625772 6625902 -142157570 - MIR SINE MIR -105 157 32 268 278 48 63 chr11 6626817 6626943 -142156529 + L2 LINE L2 3149 3272 0 308 306 7 35 chr11 6627624 6627768 -142155704 - L1ME4a LINE L1 -112 6009 5870 237 287 105 27 chr11 6627917 6628213 -142155259 - L1ME4a LINE L1 -320 5801 5483 21 0 0 0 chr11 6628225 6628246 -142155226 + AT_rich Low_complexity Low_complexity 1 21 0 2365 32 39 39 chr11 6628390 6628698 -142154774 - AluY SINE Alu -3 308 1 282 270 37 42 chr11 6628809 6629024 -142154448 - L1ME4a LINE L1 -2341 5467 5254 820 222 74 17 chr11 6629181 6629411 -142154061 - MIR SINE MIR -2 260 18 3861 56 4 0 chr11 6629677 6630163 -142153309 - L1PA8 LINE L1 -11 6161 5674 3660 82 15 6 chr11 6630170 6631027 -142152445 - L1P3 LINE L1 -368 5786 4920 381 22 0 0 chr11 6631096 6631142 -142152330 + (CA)n Simple_repeat Simple_repeat 1 46 0 1926 145 0 6 chr11 6631222 6631539 -142151933 - L1PB1 LINE L1 -3 6148 5834 761 232 46 12 chr11 6631702 6631943 -142151529 + L1MB7 LINE L1 5935 6183 -1 257 333 25 0 chr11 6631998 6632160 -142151312 + Tigger8 DNA MER2_type 290 455 -211 311 322 80 36 chr11 6632361 6632662 -142150810 - L1ME4a LINE L1 -1325 4821 4508 2559 186 111 43 chr11 6632833 6633619 -142149853 - L1ME2 LINE L1 -9 6155 5317 1057 240 5 0 chr11 6633640 6633848 -142149624 - AluJb SINE Alu -20 292 84 358 162 0 15 chr11 6633863 6633931 -142149541 - FLAM SINE Alu -10 123 57 361 273 96 20 chr11 6634261 6634510 -142148962 - L1ME2 LINE L1 -2191 3955 3688 317 194 14 0 chr11 6634972 6635044 -142148428 + MER116 DNA Mariner 2 74 -6 8298 79 6 0 chr11 6635241 6637150 -142146322 - L1PA7 LINE L1 0 6154 4236 876 256 176 36 chr11 6637150 6637541 -142145931 + L2 LINE L2 2867 3312 -1 494 157 12 11 chr11 6637568 6637726 -142145746 + CT-rich Low_complexity Low_complexity 1 158 0 241 323 65 0 chr11 6638127 6638220 -142145252 + MIR SINE MIR 18 116 -92 246 255 0 0 chr11 6638496 6638547 -142144925 - L2 LINE L2 -23 3290 3240 259 275 66 22 chr11 6638565 6638656 -142144816 - MIR SINE MIR -30 232 138 451 237 61 9 chr11 6639136 6639250 -142144222 + MIR SINE MIR 24 143 -119 191 325 24 0 chr11 6639629 6639712 -142143760 - L2 LINE L2 -527 2787 2703 284 355 107 25 chr11 6640846 6641043 -142142429 - L3 LINE CR1 -227 1350 1138 5568 84 24 16 chr11 6641087 6641906 -142141566 + L1MA1 LINE L1 5473 6298 -4 22 56 0 0 chr11 6641938 6641974 -142141498 + AT_rich Low_complexity Low_complexity 1 36 0 990 328 177 16 chr11 6642020 6642709 -142140763 - L3 LINE CR1 -550 1027 228 687 268 97 68 chr11 6643548 6643973 -142139499 - L2 LINE L2 -695 2619 2183 246 325 44 100 chr11 6644986 6645146 -142138326 - MIR SINE MIR -70 192 42 483 221 177 12 chr11 6645211 6645379 -142138093 - HAL1 LINE L1 -93 2414 2275 285 51 0 0 chr11 6645379 6645418 -142138054 + (CA)n Simple_repeat Simple_repeat 1 39 0 483 221 177 12 chr11 6645418 6645571 -142137901 - HAL1 LINE L1 -232 2275 2040 2000 260 70 55 chr11 6645571 6646625 -142136847 + L2 LINE L2 2241 3313 0 330 26 0 0 chr11 6646657 6646696 -142136776 + (TG)n Simple_repeat Simple_repeat 2 40 0 755 154 18 35 chr11 6646813 6646982 -142136490 + L1PA13 LINE L1 5995 6160 -3 1772 274 90 64 chr11 6647003 6647505 -142135967 - L1M4 LINE L1 -1302 4844 4357 7292 40 0 11 chr11 6647505 6648637 -142134835 + L1PA4 LINE L1 5033 6154 -1 1772 274 90 64 chr11 6648637 6650134 -142133338 - L1M4 LINE L1 -1789 4357 2793 653 225 46 0 chr11 6650336 6650487 -142132985 + MER77 LTR ERV1 1 158 -447 601 158 0 0 chr11 6650494 6650589 -142132883 + MER77 LTR ERV1 511 605 0 1825 123 40 7 chr11 6652452 6652753 -142130719 - L1PA6 LINE L1 -58 6096 5786 4359 169 42 28 chr11 6653228 6654029 -142129443 - L1PA16 LINE L1 -1 6165 5334 1571 185 0 50 chr11 6654029 6654332 -142129140 + AluJb SINE Alu 1 288 -24 4359 169 42 28 chr11 6654332 6654566 -142128906 - L1PA16 LINE L1 -832 5334 5105 10552 219 30 18 chr11 6654709 6656672 -142126800 - L1PA15-16 LINE L1 -869 5980 4042 4938 32 0 0 chr11 6656672 6657256 -142126216 - L1PA4 LINE L1 0 6155 5572 10552 219 30 18 chr11 6657256 6657733 -142125739 - L1PA15-16 LINE L1 -2807 4042 3572 1092 117 0 0 chr11 6657733 6657895 -142125577 - L1PB1 LINE L1 -2 6149 5988 10552 219 30 18 chr11 6657895 6658771 -142124701 - L1PA15-16 LINE L1 -3277 3572 2627 1677 224 91 83 chr11 6658791 6659527 -142123945 - L1ME1 LINE L1 -5 6230 5489 4461 257 84 27 chr11 6659542 6661114 -142122358 - L1ME1 LINE L1 -806 5409 3928 1873 78 0 4 chr11 6661114 6661346 -142122126 - AluY SINE Alu -5 306 76 4461 257 84 27 chr11 6661346 6661406 -142122066 - L1ME1 LINE L1 -2287 3928 3873 15456 137 29 33 chr11 6661406 6664147 -142119325 + Tigger4(Zombi) DNA MER2_type 1 2731 0 4461 257 84 27 chr11 6664147 6664857 -142118615 - L1ME1 LINE L1 -2342 3873 2909 1083 246 71 16 chr11 6664962 6665549 -142117923 - L1ME1 LINE L1 -3594 2621 2031 2152 228 49 72 chr11 6665551 6665813 -142117659 - L1MEc LINE L1 -3009 3206 2940 1828 157 35 7 chr11 6665813 6666099 -142117373 + AluJo SINE Alu 1 294 -18 2152 228 49 72 chr11 6666099 6667121 -142116351 - L1MEc LINE L1 -3275 2940 1970 319 286 11 0 chr11 6667194 6667285 -142116187 - MLT1K LTR MaLR -330 258 167 1032 186 83 10 chr11 6667732 6667936 -142115536 - MER20 DNA MER1_type 0 219 1 222 150 0 0 chr11 6668175 6668215 -142115257 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 352 180 90 60 chr11 6668465 6668565 -142114907 - L2 LINE L2 -17 3296 3194 12249 182 54 28 chr11 6668566 6669068 -142114404 - L1MA4A LINE L1 -7 6998 6510 297 0 0 0 chr11 6669068 6669101 -142114371 + (TA)n Simple_repeat Simple_repeat 2 34 0 12249 182 54 28 chr11 6669101 6669894 -142113578 - L1MA4A LINE L1 -495 6510 5739 2928 6 0 0 chr11 6669894 6670212 -142113260 - AluYb8 SINE Alu 0 318 1 12249 182 54 28 chr11 6670212 6670656 -142112816 - L1MA4A LINE L1 -1266 5739 5308 2218 89 7 0 chr11 6670656 6670960 -142112512 - AluSp SINE Alu 0 306 1 12249 182 54 28 chr11 6670960 6673388 -142110084 - L1MA4A LINE L1 -1697 5308 2944 2290 114 0 0 chr11 6673388 6673687 -142109785 - AluSq SINE Alu -14 299 1 12249 182 54 28 chr11 6673687 6676266 -142107206 - L1MA4A LINE L1 -4061 2944 43 741 211 0 0 chr11 6676296 6676429 -142107043 - FLAM_A SINE Alu 0 133 1 235 235 102 31 chr11 6676649 6676747 -142106725 + L2 LINE L2 3164 3268 -4 938 258 67 0 chr11 6678760 6679000 -142104472 + MIR SINE MIR 7 262 0 1524 191 86 3 chr11 6679007 6679322 -142104150 - MER2 DNA MER2_type 0 344 4 2218 116 3 0 chr11 6682147 6682441 -142101031 + AluSx SINE Alu 1 295 -17 207 0 0 0 chr11 6682918 6682941 -142100531 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 227 258 90 17 chr11 6683501 6683589 -142099883 + MIR SINE MIR 9 101 -107 534 367 25 108 chr11 6683591 6684139 -142099333 - MLT1J LTR MaLR -7 504 2 240 301 29 19 chr11 6684146 6684249 -142099223 + (CTCA)n Simple_repeat Simple_repeat 1 104 0 185 378 61 0 chr11 6684293 6684375 -142099097 - L2 LINE L2 -49 3223 3137 305 258 0 0 chr11 6685553 6685615 -142097857 + MLT1J2 LTR MaLR 389 450 0 584 308 94 26 chr11 6685946 6686180 -142097292 + MIR SINE MIR 9 258 -4 724 300 38 9 chr11 6889430 6889664 -141893808 + MIR SINE MIR 22 262 0 8119 22 0 1 chr11 6889796 6891348 -141892124 - L1PA3 LINE L1 -223 5932 4383 284 300 24 24 chr11 6891630 6891800 -141891672 + (CGAGG)n Simple_repeat Simple_repeat 2 171 0 1199 149 5 36 chr11 6893367 6893588 -141889884 - AluJo SINE Alu -98 214 1 1513 116 0 35 chr11 6893704 6893936 -141889536 - L1PA8A LINE L1 0 6131 5908 281 317 8 8 chr11 6894403 6894526 -141888946 + GA-rich Low_complexity Low_complexity 5 127 0 259 155 24 32 chr11 6895203 6895333 -141888139 + C-rich Low_complexity Low_complexity 1 128 0 750 317 75 36 chr11 6896305 6896693 -141886779 + L2 LINE L2 2870 3272 0 304 235 54 5 chr11 6897135 6897231 -141886241 - MIR SINE MIR -62 146 49 1463 138 94 0 chr11 6897258 6897482 -141885990 - AluJo SINE Alu -57 255 11 481 298 137 6 chr11 6898089 6898250 -141885222 + MIR SINE MIR 46 227 -35 1668 238 96 38 chr11 6898982 6899688 -141883784 + L1M1 LINE L1 2286 3032 -4533 1428 109 5 0 chr11 6899720 6899904 -141883568 + AluSx SINE Alu 1 185 -127 4892 136 31 31 chr11 6899904 6901269 -141882203 + L1M2 LINE L1 4453 5813 -478 345 257 7 44 chr11 6902903 6903039 -141880433 + GA-rich Low_complexity Low_complexity 4 134 0 528 293 47 60 chr11 6903101 6903316 -141880156 + MIR SINE MIR 2 213 -49 327 219 124 52 chr11 6903623 6903762 -141879710 - MIR SINE MIR -52 156 2 328 219 105 79 chr11 6904306 6904420 -141879052 - L2 LINE L2 -34 3238 3122 298 192 128 0 chr11 6904523 6904601 -141878871 - MIR3 SINE MIR -37 171 84 1700 102 9 0 chr11 6904798 6905023 -141878449 - AluSq SINE Alu -86 227 1 309 320 19 39 chr11 6905054 6905260 -141878212 - L1ME LINE L1 -306 5815 5614 602 238 56 14 chr11 6905324 6905467 -141878005 + MIR SINE MIR 44 192 -70 194 345 0 0 chr11 6906610 6906668 -141876804 + MIR SINE MIR 201 258 -4 202 298 41 135 chr11 6907073 6907489 -141875983 + L2 LINE L2 2596 2972 -342 207 233 0 0 chr11 6907500 6907543 -141875929 + L2 LINE L2 3214 3256 -16 1308 111 79 14 chr11 6907974 6908190 -141875282 + MER4E LTR ERV1 536 765 -1 318 336 47 63 chr11 6908434 6908815 -141874657 - L1ME LINE L1 -297 5867 5493 189 121 0 0 chr11 6909480 6909513 -141873959 + (T)n Simple_repeat Simple_repeat 1 33 0 1744 29 10 0 chr11 6909515 6909723 -141873749 - L1PA2 LINE L1 -4 6151 5942 1624 161 4 11 chr11 6909829 6910090 -141873382 - AluJo SINE Alu -53 259 1 353 302 158 7 chr11 6911448 6911587 -141871885 + MIR3 SINE MIR 49 208 0 348 251 99 34 chr11 6911711 6911881 -141871591 + MIR SINE MIR 16 192 -70 238 257 204 0 chr11 6911961 6912074 -141871398 - MIR SINE MIR -12 250 115 1331 74 21 11 chr11 6912975 6913164 -141870308 + AluY SINE Alu 106 296 -15 380 368 61 0 chr11 6913184 6913347 -141870125 - L1M4 LINE L1 -2610 4496 4324 231 61 0 0 chr11 6913481 6913514 -141869958 + (GA)n Simple_repeat Simple_repeat 1 33 0 292 299 49 28 chr11 6915949 6916093 -141867379 - MIR SINE MIR -72 190 44 584 95 12 0 chr11 6916322 6916406 -141867066 - PABL_B LTR ERV1 0 667 583 1098 109 0 44 chr11 6916510 6916693 -141866779 - MER4E LTR ERV1 -244 522 348 1783 113 164 80 chr11 6916767 6917140 -141866332 + MER4A LTR ERV1 261 664 0 1688 154 19 70 chr11 6917140 6917471 -141866001 - MER4E LTR ERV1 -415 351 39 2305 90 3 0 chr11 6917471 6917759 -141865713 - AluSc SINE Alu -9 300 12 1688 154 19 70 chr11 6917759 6917797 -141865675 - MER4E LTR ERV1 -727 39 1 21 0 0 0 chr11 6918286 6918307 -141865165 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr11 6918539 6918560 -141864912 + (CAG)n Simple_repeat Simple_repeat 1 21 0 1104 70 0 0 chr11 6918644 6918773 -141864699 + AluY SINE Alu 1 129 -182 2835 202 97 68 chr11 6918906 6919047 -141864425 - L1M4 LINE L1 -4877 2160 2025 2321 121 0 6 chr11 6919047 6919362 -141864110 - AluSq SINE Alu 0 313 1 2835 202 97 68 chr11 6919362 6920361 -141863111 - L1M4 LINE L1 -5012 2025 978 969 274 62 22 chr11 6920636 6921037 -141862435 + L1ME4a LINE L1 5492 5908 -213 2207 97 0 17 chr11 6921146 6921458 -141862014 - AluSx SINE Alu 0 307 1 301 215 0 15 chr11 6921458 6921523 -141861949 + MLT1H1 LTR MaLR 487 550 -5 385 259 46 30 chr11 6921908 6922039 -141861433 - MER5B DNA MER1_type -11 167 35 2473 73 0 3 chr11 6922128 6922431 -141861041 - AluY SINE Alu -9 302 1 480 204 250 66 chr11 6922513 6922575 -141860897 - MIR SINE MIR -12 250 201 2106 113 10 32 chr11 6922575 6922884 -141860588 - AluSx SINE Alu -10 302 1 480 204 250 66 chr11 6922884 6923017 -141860455 - MIR SINE MIR -61 201 19 339 224 168 19 chr11 6923115 6923222 -141860250 + L2 LINE L2 3150 3272 0 181 292 42 33 chr11 6924038 6924158 -141859314 + MIR SINE MIR 44 164 -98 215 357 188 0 chr11 6924478 6924590 -141858882 - MIR SINE MIR -73 189 57 866 287 12 16 chr11 6925105 6925352 -141858120 - MIR SINE MIR -1 261 16 459 157 0 0 chr11 6925382 6925471 -141858001 + (CA)n Simple_repeat Simple_repeat 1 89 0 256 340 0 0 chr11 6926166 6926269 -141857203 + (TG)n Simple_repeat Simple_repeat 1 103 0 1045 225 113 24 chr11 6927405 6927863 -141855609 - L1MEc LINE L1 -2624 3591 3093 1401 240 94 36 chr11 6927878 6928494 -141854978 - L1MEc LINE L1 -5122 1274 623 515 223 33 0 chr11 6928490 6928611 -141854861 - L1ME LINE L1 -368 5798 5674 * 2589 133 45 63 chr11 6928611 6929101 -141854371 + L1MD1 LINE L1 5693 6173 -69 584 170 116 27 chr11 6929101 6929213 -141854259 - FLAM_A SINE Alu -11 122 1 2589 133 45 63 chr11 6929213 6929277 -141854195 + L1MD1 LINE L1 6173 6237 -5 336 294 87 49 chr11 6929287 6929424 -141854048 + L1M4 LINE L1 5109 5256 -890 1871 166 0 13 chr11 6929424 6929725 -141853747 - AluSx SINE Alu -13 299 3 336 294 87 49 chr11 6929725 6929771 -141853701 + L1M4 LINE L1 5256 5299 -847 329 271 10 52 chr11 6929783 6929879 -141853593 + L1M LINE L1 5333 5424 -2384 295 301 77 11 chr11 6930206 6930389 -141853083 - HAL1 LINE L1 -855 1652 1458 21 0 0 0 chr11 6930440 6930461 -141853011 + AT_rich Low_complexity Low_complexity 1 21 0 5979 63 20 1 chr11 6930473 6931267 -141852205 - L1PA6 LINE L1 -2 6152 5344 4282 49 0 0 chr11 6931437 6931992 -141851480 - L1PA6 LINE L1 -887 5259 4705 463 287 16 31 chr11 6932051 6932309 -141851163 - HAL1 LINE L1 -1132 1375 1122 2164 132 0 10 chr11 6932361 6932665 -141850807 - AluSx SINE Alu -11 301 1 261 0 0 0 chr11 6932695 6932724 -141850748 + (T)n Simple_repeat Simple_repeat 1 29 0 2394 80 0 10 chr11 6933008 6933310 -141850162 - AluY SINE Alu -12 299 1 2355 149 79 11 chr11 6933426 6933883 -141849589 - L1MA8 LINE L1 -2 6289 5802 1176 141 28 0 chr11 6933883 6934060 -141849412 + AluJb SINE Alu 2 183 -129 360 311 44 22 chr11 6934408 6934543 -141848929 + MIR3 SINE MIR 34 171 -37 207 217 22 0 chr11 6934870 6934916 -141848556 + MIR SINE MIR 173 219 -43 389 276 35 28 chr11 6934957 6935102 -141848370 + L2 LINE L2 2644 2789 -525 549 329 100 42 chr11 6935390 6935770 -141847702 + L1M4 LINE L1 4233 4634 -1512 212 186 34 17 chr11 6936214 6936273 -141847199 + A-rich Low_complexity Low_complexity 3 62 0 419 301 66 46 chr11 6936719 6936915 -141846557 + MIR3 SINE MIR 7 206 -2 213 315 54 95 chr11 6937029 6937324 -141846148 - L2 LINE L2 -22 3250 2968 331 269 19 46 chr11 6938784 6938892 -141844580 + MER91A DNA MER1_type 22 126 -70 247 163 61 0 chr11 6941493 6941542 -141841930 + L3 LINE CR1 1525 1576 -1 1698 160 0 42 chr11 6943147 6943435 -141840037 + AluJb SINE Alu 1 276 -36 242 203 0 29 chr11 6943441 6943510 -141839962 + GA-rich Low_complexity Low_complexity 4 70 0 1007 244 111 32 chr11 6943709 6944053 -141839419 - L2 LINE L2 -15 3298 2928 231 310 71 35 chr11 6944479 6944592 -141838880 + L3 LINE CR1 1291 1407 -170 406 302 191 41 chr11 6945701 6946218 -141837254 + L2 LINE L2 2378 2972 -342 247 401 139 22 chr11 6946336 6946752 -141836720 - L2 LINE L2 -1 3271 2807 389 284 97 37 chr11 6946767 6946901 -141836571 + HAL1 LINE L1 2 143 -2364 540 131 85 0 chr11 6946932 6947062 -141836410 - Charlie5 DNA MER1_type -27 2585 2445 214 321 98 18 chr11 6949219 6949331 -141834141 - L3 LINE CR1 -926 651 531 275 260 0 0 chr11 6949471 6949544 -141833928 + (TCCA)n Simple_repeat Simple_repeat 1 73 0 279 253 26 148 chr11 6949582 6949811 -141833661 - L2 LINE L2 -74 3198 2998 1405 177 56 16 chr11 6950081 6950330 -141833142 + AluJo SINE Alu 1 259 -53 442 270 163 23 chr11 6951269 6951484 -141831988 + MLT1L LTR MaLR 371 615 0 210 200 0 0 chr11 6952050 6952085 -141831387 - MIR SINE MIR -63 145 111 411 208 171 20 chr11 6952330 6952479 -141830993 - MIR SINE MIR -48 214 50 669 295 47 0 chr11 6954066 6954300 -141829172 + L1ME LINE L1 5527 5771 -350 384 259 128 35 chr11 6955072 6955239 -141828233 - MER5A DNA MER1_type 0 189 1 240 35 0 0 chr11 6955343 6955372 -141828100 + (CA)n Simple_repeat Simple_repeat 2 30 0 612 221 12 81 chr11 6957301 6957473 -141825999 - MIR3 SINE MIR -39 169 10 256 344 33 25 chr11 6958518 6958640 -141824832 + L2 LINE L2 3101 3223 -49 3077 210 80 8 chr11 6958870 6959617 -141823855 + MER63C DNA MER1_type 21 821 -109 2010 117 0 7 chr11 6959621 6959902 -141823570 - AluJb SINE Alu -3 309 31 4237 64 0 9 chr11 6959902 6960452 -141823020 + PABL_A LTR ERV1 1 545 -115 646 266 117 38 chr11 6960956 6961272 -141822200 + MER102b DNA MER1_type 1 341 0 250 279 198 18 chr11 6961336 6961447 -141822025 - L2 LINE L2 -6 3266 3136 1897 202 157 4 chr11 6962120 6962580 -141820892 + MLT1G LTR MaLR 14 543 -47 2039 124 56 31 chr11 6964088 6964377 -141819095 + MLT1A1 LTR MaLR 1 302 -63 2294 87 0 10 chr11 6964377 6964666 -141818806 - AluSq SINE Alu -9 304 19 2039 124 56 31 chr11 6964666 6964732 -141818740 + MLT1A1 LTR MaLR 302 365 0 26 30 0 0 chr11 6965490 6965523 -141817949 + AT_rich Low_complexity Low_complexity 1 33 0 2519 76 3 0 chr11 6965543 6965847 -141817625 - AluSp SINE Alu -8 305 1 592 222 9 0 chr11 6966578 6966686 -141816786 - MER68 LTR ERV1 -1 561 453 1495 224 60 58 chr11 6966688 6967189 -141816283 - MER77 LTR ERV1 0 605 104 453 268 12 47 chr11 6967395 6967528 -141815944 + LTR16A1 LTR ERVL 290 382 -75 650 233 41 82 chr11 6967528 6967747 -141815725 - MER63A DNA MER1_type 0 210 1 453 268 12 47 chr11 6967747 6967819 -141815653 + LTR16A1 LTR ERVL 382 455 -2 406 299 30 12 chr11 6968072 6968236 -141815236 + HERVL LTR ERVL 3230 3396 -2258 906 232 28 13 chr11 6968718 6968989 -141814483 - MLT1H LTR MaLR -229 320 3 279 393 19 10 chr11 6969067 6969273 -141814199 + L2 LINE L2 2151 2358 -956 342 313 20 7 chr11 6970214 6970361 -141813111 - L1ME LINE L1 -350 5771 5623 327 340 115 13 chr11 6970492 6970648 -141812824 + MIR SINE MIR 1 172 -90 1218 247 53 51 chr11 6970651 6971084 -141812388 - L2 LINE L2 -1 3312 2879 2977 215 77 23 chr11 6971100 6972714 -141810758 - L1ME1 LINE L1 -135 6031 4333 3750 169 51 63 chr11 6972726 6973143 -141810329 - L1MB4 LINE L1 0 6180 5760 2052 119 0 3 chr11 6973143 6973436 -141810036 - AluSx SINE Alu -8 304 13 3750 169 51 63 chr11 6973436 6974358 -141809114 - L1MB4 LINE L1 -420 5760 4863 1829 192 3 6 chr11 6974358 6974670 -141808802 + AluJb SINE Alu 1 311 -1 3750 169 51 63 chr11 6974670 6974724 -141808748 - L1MB4 LINE L1 -1317 4863 4810 2282 125 0 0 chr11 6975007 6975319 -141808153 - AluSx SINE Alu 0 312 1 346 196 43 22 chr11 6978087 6978179 -141805293 + MER58A DNA MER1_type 42 135 0 379 318 135 6 chr11 6979734 6979904 -141803568 + MIR3 SINE MIR 15 206 -2 1200 275 108 44 chr11 6982214 6983089 -141800383 + L2 LINE L2 2303 3299 -14 185 261 43 0 chr11 6983212 6983258 -141800214 - MIR SINE MIR -60 148 101 294 219 168 66 chr11 6983272 6983409 -141800063 + MIR SINE MIR 58 208 -54 264 297 91 29 chr11 6983929 6984104 -141799368 + L3 LINE CR1 1171 1356 -221 309 36 55 0 chr11 6990003 6990058 -141793414 + (TA)n Simple_repeat Simple_repeat 1 58 0 276 266 13 0 chr11 6990794 6990873 -141792599 - MIR3 SINE MIR -52 156 77 194 261 142 52 chr11 6991592 6991726 -141791746 + MIR3 SINE MIR 48 193 -15 211 224 0 35 chr11 6993775 6993833 -141789639 + CT-rich Low_complexity Low_complexity 4 59 0 1813 155 11 14 chr11 6993952 6994236 -141789236 + AluJo SINE Alu 14 296 -16 847 217 17 23 chr11 6994547 6994722 -141788750 - MER5A DNA MER1_type -7 182 9 566 211 8 0 chr11 6996583 6996706 -141786766 + L1MA8 LINE L1 6166 6289 -2 256 260 208 19 chr11 6996767 6996921 -141786551 - L3 LINE CR1 -102 1475 1293 490 291 150 30 chr11 6996934 6997034 -141786438 - MIR SINE MIR 0 262 175 2010 106 0 72 chr11 6997034 6997355 -141786117 - AluY SINE Alu -13 298 1 490 291 150 30 chr11 6997355 6997488 -141785984 - MIR SINE MIR -87 175 1 303 327 53 7 chr11 6997502 6997710 -141785762 - L3 LINE CR1 -344 1233 964 257 303 56 0 chr11 6998055 6998144 -141785328 - MIR3 SINE MIR -33 175 82 227 267 43 60 chr11 6998511 6998627 -141784845 + MIR SINE MIR 27 140 -68 778 154 0 0 chr11 6998755 6998872 -141784600 - FRAM SINE Alu -39 137 21 288 65 78 0 chr11 6999034 6999111 -141784361 + (TA)n Simple_repeat Simple_repeat 1 83 0 2803 20 0 0 chr11 6999209 6999514 -141783958 + AluY SINE Alu 1 305 -6 587 243 76 43 chr11 6999850 6999901 -141783571 - MIR SINE MIR -12 250 202 402 205 0 0 chr11 6999901 6999979 -141783493 - MER116 DNA Mariner -2 78 1 587 243 76 43 chr11 6999979 7000112 -141783360 - MIR SINE MIR -60 202 60 23 0 0 0 chr11 7000982 7001005 -141782467 + AT_rich Low_complexity Low_complexity 1 23 0 222 319 94 43 chr11 7001643 7001840 -141781632 - MIR SINE MIR -29 233 30 312 185 0 0 chr11 7002075 7002129 -141781343 - L2 LINE L2 -2 3270 3217 944 237 98 109 chr11 7004117 7004665 -141778807 + MLT1H LTR MaLR 8 549 0 547 253 39 52 chr11 7004765 7004919 -141778553 - MER91A DNA MER1_type -41 155 4 189 290 177 8 chr11 7005935 7006059 -141777413 - MIR3 SINE MIR -22 186 42 484 313 33 0 chr11 7006616 7006766 -141776706 - MIR SINE MIR -87 175 21 262 233 27 48 chr11 7007586 7007732 -141775740 + (GGGTG)n Simple_repeat Simple_repeat 3 145 0 223 171 0 0 chr11 7008000 7008041 -141775431 + (TG)n Simple_repeat Simple_repeat 2 42 0 322 312 101 0 chr11 7010521 7010659 -141772813 - MIR SINE MIR -21 241 90 403 244 130 0 chr11 7011050 7011165 -141772307 - MER94 DNA DNA -2 132 3 266 348 101 18 chr11 7012032 7012259 -141771213 - MIR SINE MIR -4 258 13 182 239 87 0 chr11 7012339 7012385 -141771087 + L2 LINE L2 3223 3272 0 315 154 67 67 chr11 7015700 7015804 -141767668 - L1ME4a LINE L1 -3 6118 6015 1574 79 4 35 chr11 7015864 7016091 -141767381 - AluSg/x SINE Alu -2 308 89 469 125 45 23 chr11 7016195 7016283 -141767189 + AluJ/FRAM SINE Alu 223 312 0 306 0 0 0 chr11 7016297 7016331 -141767141 + (CAAG)n Simple_repeat Simple_repeat 2 35 0 688 236 40 5 chr11 7016331 7016521 -141766951 + L1ME1 LINE L1 3516 3715 -2431 * 3616 209 67 14 chr11 7016520 7017159 -141766313 + L1ME1 LINE L1 4434 5038 -1296 2404 92 0 16 chr11 7017159 7017475 -141765997 + AluY SINE Alu 1 311 0 3616 209 67 14 chr11 7017475 7017936 -141765536 + L1ME1 LINE L1 5038 5473 -861 2022 119 17 30 chr11 7017936 7018238 -141765234 + AluSx SINE Alu 1 298 -14 3616 209 67 14 chr11 7018238 7018787 -141764685 + L1ME1 LINE L1 5473 6332 -2 573 292 50 12 chr11 7019137 7019298 -141764174 - MIR3 SINE MIR -22 186 20 281 291 97 48 chr11 7019493 7019658 -141763814 - MIR3 SINE MIR -10 198 26 359 372 78 37 chr11 7020852 7020938 -141762534 + L2 LINE L2 1805 1886 -1428 2640 36 7 0 chr11 7020938 7021241 -141762231 - AluY SINE Alu -6 305 1 359 372 78 37 chr11 7021241 7021692 -141761780 + L2 LINE L2 1886 2364 -950 300 300 89 48 chr11 7021979 7022272 -141761200 + L2 LINE L2 2179 2483 -831 533 262 41 35 chr11 7022298 7022470 -141761002 + MLT1K LTR MaLR 69 241 -347 229 198 48 111 chr11 7022615 7022741 -141760731 + LTR67 LTR ERVL 432 549 -8 218 309 62 0 chr11 7022851 7022932 -141760540 + L2 LINE L2 2662 2747 -567 498 286 90 108 chr11 7022956 7023283 -141760189 - L2 LINE L2 -337 2977 2646 306 73 0 0 chr11 7023283 7023324 -141760148 + (CTCA)n Simple_repeat Simple_repeat 2 42 0 498 286 90 108 chr11 7023324 7023730 -141759742 - L2 LINE L2 -668 2646 2257 2095 98 4 4 chr11 7023797 7024072 -141759400 + AluSx SINE Alu 1 275 -37 342 266 65 43 chr11 7024230 7024369 -141759103 + HAL1 LINE L1 231 372 -2135 1499 147 4 25 chr11 7024371 7024616 -141758856 + AluJo SINE Alu 1 240 -72 321 87 0 0 chr11 7024682 7024728 -141758744 + AluJo SINE Alu 247 292 -10 618 299 43 9 chr11 7024869 7025080 -141758392 - MIR SINE MIR -44 218 1 605 263 81 84 chr11 7025143 7025478 -141757994 - L2 LINE L2 -809 2505 2172 983 318 84 44 chr11 7025527 7025685 -141757787 - L2 LINE L2 -2620 694 544 1748 108 43 49 chr11 7025685 7026020 -141757452 - AluY SINE Alu 0 311 1 983 318 84 44 chr11 7026020 7026206 -141757266 - L2 LINE L2 -2770 544 367 2430 95 3 0 chr11 7026206 7026512 -141756960 + AluSc SINE Alu 1 307 -2 983 318 84 44 chr11 7026512 7026785 -141756687 - L2 LINE L2 -2947 367 51 2221 123 0 3 chr11 7027018 7027319 -141756153 + AluSx SINE Alu 1 300 -12 387 273 21 103 chr11 7028079 7028273 -141755199 - MIR3 SINE MIR -30 178 1 2338 86 3 17 chr11 7028524 7028825 -141754647 - AluSc SINE Alu -12 297 1 1754 223 14 6 chr11 7029843 7030206 -141753266 + MLT2D LTR ERVL 1 366 -48 331 324 89 51 chr11 7030500 7030870 -141752602 + LTR67 LTR ERVL 36 419 -138 202 167 0 0 chr11 7030875 7030905 -141752567 + MIR SINE MIR 117 146 -116 899 309 112 11 chr11 7032192 7032568 -141750904 + LTR16C LTR ERVL 78 491 0 390 194 10 51 chr11 7032742 7032840 -141750632 + MLT1K LTR MaLR 479 572 -16 855 207 66 10 chr11 7033284 7033482 -141749990 + ORSL DNA AcHobo 1 209 -66 1334 280 74 11 chr11 7034482 7034942 -141748530 + L2 LINE L2 2824 3312 -1 238 49 0 0 chr11 7035091 7035132 -141748340 + Alu SINE Alu 262 302 0 237 206 315 22 chr11 7035150 7035242 -141748230 - L2 LINE L2 -4 3309 3191 198 250 71 0 chr11 7035546 7035602 -141747870 + L2 LINE L2 2688 2747 -567 1864 197 28 23 chr11 7036174 7036564 -141746908 + MSTD LTR MaLR 1 392 -4 21 0 0 0 chr11 7037195 7037216 -141746256 + AT_rich Low_complexity Low_complexity 1 21 0 8293 40 16 0 chr11 7037216 7038943 -141744529 - L1PA5 LINE L1 -7 6147 4405 241 292 0 0 chr11 7039139 7039211 -141744261 + MIR SINE MIR 191 262 0 2194 125 3 0 chr11 7040232 7040536 -141742936 - AluSq SINE Alu -8 305 1 4813 57 24 3 chr11 7041760 7042339 -141741133 + LTR10C LTR ERV1 1 591 0 198 0 0 0 chr11 7042848 7042870 -141740602 + (T)n Simple_repeat Simple_repeat 1 22 0 255 304 38 25 chr11 7042899 7042978 -141740494 + MIR SINE MIR 27 106 -102 1583 237 37 37 chr11 7043579 7044010 -141739462 + MLT1J1 LTR MaLR 16 446 0 22241 32 2 0 chr11 7044022 7046665 -141736807 + L1P LINE L1 1770 4418 -1728 22 0 0 0 chr11 7047067 7047089 -141736383 + AT_rich Low_complexity Low_complexity 1 22 0 6314 125 8 11 chr11 7047485 7048851 -141734621 - L1PA15 LINE L1 -4 6161 4795 3378 210 82 19 chr11 7049246 7050126 -141733346 - L1ME1 LINE L1 -17 6149 5183 1982 146 0 3 chr11 7050126 7050427 -141733045 - AluJb SINE Alu -12 300 1 3378 210 82 19 chr11 7050427 7050651 -141732821 - L1ME1 LINE L1 -983 5183 4975 301 262 37 19 chr11 7050756 7050863 -141732609 - HAL1b LINE L1 -49 1299 1191 699 83 4 78 chr11 7050967 7051234 -141732238 + AluSc SINE Alu 1 309 0 21 0 0 0 chr11 7051299 7051320 -141732152 + AT_rich Low_complexity Low_complexity 1 21 0 373 283 117 33 chr11 7052101 7052605 -141730867 - L1ME1 LINE L1 -1227 4919 4368 405 293 40 30 chr11 7052710 7052908 -141730564 - L1ME1 LINE L1 -1924 4222 4023 313 344 83 6 chr11 7052931 7053088 -141730384 - L1ME1 LINE L1 -2275 3871 3703 931 133 7 0 chr11 7053091 7053226 -141730246 + AluJb SINE Alu 6 141 -171 43 20 0 0 chr11 7053248 7053298 -141730174 + AT_rich Low_complexity Low_complexity 1 50 0 232 222 0 28 chr11 7053342 7053414 -141730058 + (TA)n Simple_repeat Simple_repeat 2 71 0 1741 99 4 0 chr11 7053503 7053736 -141729736 - L1PA11 LINE L1 -2 6172 5939 26 0 0 0 chr11 7054021 7054047 -141729425 + AT_rich Low_complexity Low_complexity 1 26 0 489 195 0 0 chr11 7054113 7054195 -141729277 + Tigger4(Zombi) DNA MER2_type 1 82 -2649 3728 94 16 0 chr11 7054200 7054709 -141728763 + Tigger4(Zombi) DNA MER2_type 2212 2728 -3 28 0 0 0 chr11 7054777 7054805 -141728667 + AT_rich Low_complexity Low_complexity 1 28 0 684 228 115 48 chr11 7054927 7055264 -141728208 + MLT1I LTR MaLR 50 435 -11 242 250 17 0 chr11 7055282 7055342 -141728130 - L1ME1 LINE L1 -3129 3017 2957 300 204 0 112 chr11 7055374 7055472 -141728000 - L1MC4 LINE L1 -1339 6703 6617 * 301 202 0 101 chr11 7055384 7055483 -141727989 + L1MC4 LINE L1 6614 6702 -1340 218 182 39 13 chr11 7055490 7055567 -141727905 + (TA)n Simple_repeat Simple_repeat 1 79 0 423 159 47 29 chr11 7055591 7055761 -141727711 + (TATATG)n Simple_repeat Simple_repeat 4 176 0 455 33 16 0 chr11 7055945 7056006 -141727466 + (TG)n Simple_repeat Simple_repeat 2 63 0 305 219 47 0 chr11 7057045 7057109 -141726363 + MIR3 SINE MIR 112 178 -30 268 241 23 69 chr11 7057163 7057225 -141726247 + MIR3 SINE MIR 111 169 -39 2429 135 25 3 chr11 7057225 7057581 -141725891 + THE1B LTR MaLR 1 364 0 268 241 23 69 chr11 7057581 7057605 -141725867 + MIR3 SINE MIR 169 193 -15 216 182 0 0 chr11 7057655 7057699 -141725773 + (CA)n Simple_repeat Simple_repeat 2 45 0 320 345 16 51 chr11 7058235 7058490 -141724982 + L1ME4a LINE L1 3733 3978 -2168 469 285 92 88 chr11 7058520 7058770 -141724702 + L1ME4a LINE L1 4114 4362 -1784 2430 71 0 19 chr11 7058770 7059079 -141724393 + AluY SINE Alu 1 303 -8 469 285 92 88 chr11 7059079 7059745 -141723727 + L1ME4a LINE L1 4362 5033 -1113 877 280 106 16 chr11 7059899 7060285 -141723187 + L1ME4a LINE L1 5495 5915 -206 2813 229 52 22 chr11 7060958 7061723 -141721749 + L1ME3A LINE L1 5383 6170 0 452 229 34 8 chr11 7061721 7061839 -141721633 + L1ME4a LINE L1 5977 6097 -24 * 22 35 0 0 chr11 7061865 7061894 -141721578 + AT_rich Low_complexity Low_complexity 1 29 0 366 85 0 0 chr11 7061939 7061998 -141721474 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 527 276 30 0 chr11 7062107 7062241 -141721231 - MER5A DNA MER1_type 0 189 52 350 315 117 19 chr11 7062457 7062670 -141720802 + MIR SINE MIR 3 236 -26 1594 201 0 28 chr11 7062855 7063174 -141720298 + AluJo SINE Alu 1 310 -2 201 74 0 0 chr11 7063228 7063255 -141720217 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 796 247 38 0 chr11 7063278 7063464 -141720008 + MIR SINE MIR 70 262 0 450 218 53 53 chr11 7063462 7063595 -141719877 - L2 LINE L2 -2 3311 3179 * 592 337 128 36 chr11 7064062 7064524 -141718948 - L2 LINE L2 0 3272 2854 1496 129 44 22 chr11 7064524 7064749 -141718723 - MER30 DNA MER1_type 0 230 1 592 337 128 36 chr11 7064749 7065193 -141718279 - L2 LINE L2 -418 2854 2286 2017 262 100 20 chr11 7065204 7065831 -141717641 + L1MEc LINE L1 22 726 -5670 1384 127 103 0 chr11 7065831 7066044 -141717428 - MER46A DNA MER2_type -1 235 1 2017 262 100 20 chr11 7066044 7066205 -141717267 + L1MEc LINE L1 726 873 -5523 3056 224 49 60 chr11 7066221 7067031 -141716441 + MER21B LTR ERV1 12 812 -51 1012 276 116 10 chr11 7067051 7067570 -141715902 + L1MEc LINE L1 894 1467 -4929 5450 171 58 13 chr11 7067613 7069582 -141713890 + L1MB8 LINE L1 4109 6165 -13 384 271 146 7 chr11 7070548 7070699 -141712773 + MIR3 SINE MIR 18 189 -19 227 329 163 45 chr11 7073279 7073525 -141709947 - L3 LINE CR1 -9 1568 1294 190 313 94 10 chr11 7073544 7073640 -141709832 - MIR SINE MIR -51 211 108 189 0 0 0 chr11 7073849 7073870 -141709602 + (CAGG)n Simple_repeat Simple_repeat 3 23 0 445 241 135 0 chr11 7076370 7076503 -141706969 - MER96B DNA MER1_type? -2 415 265 744 215 41 6 chr11 7076559 7076731 -141706741 - MER96B DNA MER1_type? -239 178 1 231 232 36 0 chr11 7077008 7077064 -141706408 + G-rich Low_complexity Low_complexity 5 62 0 197 318 11 57 chr11 7079364 7079452 -141704020 - L3 LINE CR1 -257 1320 1237 * 207 338 48 48 chr11 7079428 7079573 -141703899 - L2 LINE L2 -6 3266 3122 1385 189 18 49 chr11 7079701 7079986 -141703486 + AluJo SINE Alu 3 278 -34 195 69 0 0 chr11 7079990 7080019 -141703453 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4745 167 48 57 chr11 7080068 7080978 -141702494 - L1MB8 LINE L1 0 6178 5261 1818 176 0 19 chr11 7080978 7081290 -141702182 - AluJo SINE Alu -5 307 2 4745 167 48 57 chr11 7081290 7082683 -141700789 - L1MB8 LINE L1 -917 5261 3804 447 19 0 0 chr11 7082714 7082766 -141700706 + (TG)n Simple_repeat Simple_repeat 2 53 0 2312 122 0 0 chr11 7082839 7083151 -141700321 + AluSx SINE Alu 1 312 0 411 306 95 12 chr11 7083183 7083425 -141700047 - L2 LINE L2 -459 2855 2594 354 287 70 60 chr11 7083457 7083757 -141699715 - MLT1K LTR MaLR -6 582 280 433 149 0 0 chr11 7083974 7084041 -141699431 - AluJ/FLAM SINE Alu -223 89 23 3424 57 94 0 chr11 7084444 7084869 -141698603 + MER4C LTR ERV1 1 465 0 371 327 148 30 chr11 7084892 7085391 -141698081 - L3 LINE CR1 -320 1257 700 1276 182 36 61 chr11 7085391 7085720 -141697752 - L1MC5 LINE L1 -30 7931 7611 1895 126 0 11 chr11 7085815 7086078 -141697394 - AluSq SINE Alu -53 260 1 1164 246 98 37 chr11 7086236 7086756 -141696716 + L2 LINE L2 2632 3213 -100 2410 88 3 0 chr11 7086756 7087063 -141696409 + AluSg SINE Alu 1 308 -2 1164 246 98 37 chr11 7087063 7087170 -141696302 + L2 LINE L2 3213 3312 -1 319 243 81 0 chr11 7087264 7087375 -141696097 + L1ME4a LINE L1 5764 5883 -238 1692 41 15 0 chr11 7087412 7087608 -141695864 + L1PA5 LINE L1 5956 6154 0 339 248 128 8 chr11 7087617 7087734 -141695738 + L1ME4a LINE L1 5990 6120 -1 2118 122 26 0 chr11 7088479 7088783 -141694689 + AluSx SINE Alu 1 312 0 338 183 0 12 chr11 7089309 7089391 -141694081 + (CATATA)n Simple_repeat Simple_repeat 2 82 0 3530 174 17 2 chr11 7089949 7090548 -141692924 - MER90 LTR ERV1 -6 608 1 388 292 124 52 chr11 7091006 7091239 -141692233 - MIR SINE MIR -6 256 7 228 284 0 54 chr11 7091276 7091350 -141692122 - L2 LINE L2 -559 2755 2686 2361 94 7 0 chr11 7091920 7092219 -141691253 - AluSx SINE Alu -11 301 1 1667 168 11 11 chr11 7092272 7092552 -141690920 - AluJo SINE Alu -7 305 26 492 308 0 0 chr11 7092800 7092946 -141690526 + L1ME3A LINE L1 5713 5858 -312 520 123 0 105 chr11 7093015 7093129 -141690343 - L1MB3 LINE L1 -18 6165 6064 248 318 182 20 chr11 7093628 7094024 -141689448 - L2 LINE L2 -862 2452 1993 290 311 38 57 chr11 7094175 7094281 -141689191 + L2 LINE L2 3155 3258 -14 311 274 77 17 chr11 7094584 7094701 -141688771 + L3 LINE CR1 1358 1481 -96 4630 158 38 42 chr11 7094754 7095581 -141687891 - L1MB8 LINE L1 -6 6172 5343 2203 113 0 10 chr11 7095581 7095883 -141687589 - AluSx SINE Alu -13 299 1 4630 158 38 42 chr11 7095883 7095915 -141687557 - L1MB8 LINE L1 -835 5343 5312 2708 26 3 3 chr11 7095915 7096224 -141687248 - AluY SINE Alu -2 309 1 4630 158 38 42 chr11 7096224 7096629 -141686843 - L1MB8 LINE L1 -866 5312 4897 201 296 0 0 chr11 7096630 7096674 -141686798 + L3 LINE CR1 1531 1574 -3 4162 145 90 9 chr11 7097221 7097885 -141685587 - MER72 LTR ERV1 0 722 5 1498 155 7 58 chr11 7098304 7098614 -141684858 - AluY SINE Alu -1 310 17 1152 242 37 0 chr11 7148624 7148897 -141634575 - L1ME LINE L1 -362 5808 5526 * 5111 138 9 1 chr11 7148896 7149692 -141633780 + L1PA16 LINE L1 5364 6165 -1 261 180 0 0 chr11 7149691 7149741 -141633731 - L1ME LINE L1 -625 5539 5487 * 1241 238 53 3 chr11 7149866 7150169 -141633303 - L1ME2 LINE L1 -268 6691 6374 835 191 0 7 chr11 7150181 7150328 -141633144 + FRAM SINE Alu 6 151 -25 271 191 0 0 chr11 7150341 7150388 -141633084 - L1ME2 LINE L1 -595 6364 6318 1627 214 28 87 chr11 7150427 7150993 -141632479 + MER34 LTR ERV1 10 542 0 1498 134 46 21 chr11 7151773 7152056 -141631416 - MER4-int LTR ERV1 -1455 5143 4854 * 8300 112 53 42 chr11 7152048 7152606 -141630866 + LTR8A-int LTR ERV1 5120 5670 -928 3877 164 51 19 chr11 7152606 7153308 -141630164 + LTR8A LTR ERV1 1 725 -2 8300 112 53 42 chr11 7153308 7154210 -141629262 + LTR8A-int LTR ERV1 5670 6596 -2 3776 114 23 46 chr11 7154218 7154832 -141628640 + MER4A LTR ERV1 1 600 0 440 342 55 29 chr11 7155927 7156415 -141627057 + L2 LINE L2 1334 1834 -1480 697 245 185 79 chr11 7156427 7157071 -141626401 - HAL1 LINE L1 0 2507 1780 2196 145 0 0 chr11 7157071 7157382 -141626090 - AluSx SINE Alu -1 311 1 697 245 185 79 chr11 7157382 7157446 -141626026 - HAL1 LINE L1 -727 1780 1724 2035 142 0 0 chr11 7159068 7159371 -141624101 + AluSx SINE Alu 1 303 -9 221 215 0 13 chr11 7159436 7159515 -141623957 + GA-rich Low_complexity Low_complexity 1 78 0 2640 42 0 3 chr11 7160754 7161061 -141622411 + AluY SINE Alu 1 306 -5 2536 174 22 0 chr11 7161071 7161484 -141621988 - MSTB LTR MaLR -4 422 1 243 291 0 23 chr11 7161729 7161815 -141621657 + (CA)n Simple_repeat Simple_repeat 1 84 0 6078 168 40 27 chr11 7163627 7164479 -141618993 + L1MC2 LINE L1 4407 5247 -1097 2011 92 0 0 chr11 7164479 7164730 -141618742 + AluSc SINE Alu 40 290 -19 6078 168 40 27 chr11 7164730 7165693 -141617779 + L1MC2 LINE L1 5247 6261 -83 1252 147 20 33 chr11 7165693 7165938 -141617534 - L1MA10 LINE L1 -7 6327 6086 6078 168 40 27 chr11 7165938 7166002 -141617470 + L1MC2 LINE L1 6261 6323 -21 315 80 0 0 chr11 7165993 7166043 -141617429 + L1MC3 LINE L1 7575 7624 -161 * 1752 266 103 22 chr11 7166075 7167108 -141616364 - L1ME2 LINE L1 -877 6064 4949 2309 93 0 3 chr11 7167170 7167461 -141616011 - AluSq SINE Alu -21 292 3 511 263 158 7 chr11 7168178 7168330 -141615142 + MER5A DNA MER1_type 9 183 -6 2606 59 0 0 chr11 7168362 7168667 -141614805 - AluY SINE Alu -6 305 1 443 333 31 26 chr11 7168704 7168896 -141614576 - L1ME2 LINE L1 -5408 1015 823 41 72 0 0 chr11 7169044 7169127 -141614345 + AT_rich Low_complexity Low_complexity 1 83 0 417 117 130 0 chr11 7169127 7169204 -141614268 - L1MB2 LINE L1 -7 6164 6078 3147 198 40 60 chr11 7169211 7169270 -141614202 - L1MC4a LINE L1 0 7808 7749 761 227 0 0 chr11 7169270 7169402 -141614070 + FLAM_A SINE Alu 2 133 0 3147 198 40 60 chr11 7169402 7170146 -141613326 - L1MC4a LINE L1 -59 7749 7021 867 252 31 24 chr11 7170152 7170406 -141613066 - L1ME3A LINE L1 -5 6165 5910 260 277 264 34 chr11 7170635 7170783 -141612689 - L1ME3A LINE L1 -2073 5735 5554 184 333 46 11 chr11 7171918 7172005 -141611467 - MIR3 SINE MIR -5 203 114 542 264 149 27 chr11 7172187 7172532 -141610940 - LTR16A LTR ERVL -4 446 21 264 75 0 0 chr11 7172933 7172973 -141610499 - L1MA9 LINE L1 -3 6309 6270 300 269 239 13 chr11 7172974 7173208 -141610264 + L2 LINE L2 2275 2561 -753 26 0 0 0 chr11 7173770 7173796 -141609676 + AT_rich Low_complexity Low_complexity 1 26 0 10047 167 15 98 chr11 7173802 7176984 -141606488 + L1M2a LINE L1 6 2930 -4238 277 326 30 52 chr11 7178015 7178248 -141605224 + MLT1K LTR MaLR 316 543 -45 261 243 68 14 chr11 7179220 7179294 -141604178 - MIR SINE MIR -78 130 53 197 273 189 35 chr11 7180553 7180696 -141602776 - MIR3 SINE MIR -18 190 26 413 209 51 10 chr11 7180696 7180851 -141602621 - LTR36 LTR ERV1 -1 610 395 256 287 34 72 chr11 7182216 7182333 -141601139 - L1MC/D LINE L1 -1972 5836 5716 2350 90 10 0 chr11 7182333 7182633 -141600839 - AluSp SINE Alu -10 303 1 256 287 34 72 chr11 7182633 7182808 -141600664 - L1MC/D LINE L1 -2092 5716 5555 665 155 14 27 chr11 7183159 7183307 -141600165 + MER4C LTR ERV1 1 146 -319 327 290 25 49 chr11 7183727 7183889 -141599583 - HERVL LTR ERVL -1460 4194 4037 742 321 36 24 chr11 7184261 7184597 -141598875 - HERVL LTR ERVL -4335 661 322 1969 178 23 25 chr11 7184631 7185024 -141598448 - MSTB1 LTR MaLR 0 432 41 6606 68 0 0 chr11 7185024 7186054 -141597418 - L1PA5 LINE L1 -1 6153 5101 10090 81 9 1 chr11 7186054 7187492 -141595980 + L1PA5 LINE L1 3651 5100 -1046 30 0 0 0 chr11 7187701 7187731 -141595741 + AT_rich Low_complexity Low_complexity 1 30 0 325 306 47 80 chr11 7187849 7188124 -141595348 - L1M4 LINE L1 -3366 2780 2515 254 259 63 28 chr11 7188200 7188343 -141595129 - L1ME3A LINE L1 0 6170 6023 364 264 47 39 chr11 7190538 7190667 -141592805 - L2 LINE L2 0 3313 3184 291 114 0 0 chr11 7190670 7190714 -141592758 + (TA)n Simple_repeat Simple_repeat 1 44 0 237 173 53 0 chr11 7190727 7190802 -141592670 + (TA)n Simple_repeat Simple_repeat 2 80 0 363 167 0 0 chr11 7190884 7190950 -141592522 + (TA)n Simple_repeat Simple_repeat 1 66 0 477 331 94 20 chr11 7193081 7193380 -141590092 - L1ME3A LINE L1 -253 5868 5548 2525 178 9 38 chr11 7194277 7194829 -141588643 - LTR27 LTR ERV1 -98 538 3 441 289 41 84 chr11 7195661 7196077 -141587395 + MLT1J LTR MaLR 109 506 -5 24 0 0 0 chr11 7196087 7196111 -141587361 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr11 7196235 7196259 -141587213 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr11 7196324 7196347 -141587125 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr11 7196949 7196972 -141586500 + AT_rich Low_complexity Low_complexity 1 23 0 22952 35 0 0 chr11 7196974 7200551 -141582921 + L1PA2 LINE L1 2572 6154 -1 334 267 9 0 chr11 7200616 7200721 -141582751 - L1ME LINE L1 -461 5660 5555 32 91 0 0 chr11 7200846 7200934 -141582538 + AT_rich Low_complexity Low_complexity 1 88 0 1789 155 3 32 chr11 7201377 7201687 -141581785 + AluJb SINE Alu 1 301 -11 4747 142 55 16 chr11 7201715 7202582 -141580890 - MER4D LTR ERV1 0 903 3 606 215 35 14 chr11 7202712 7202856 -141580616 + MER93b LTR ERV1 1 147 -226 3270 59 25 7 chr11 7202908 7203348 -141580124 + LTR7 LTR ERV1 1 448 -2 18732 99 69 14 chr11 7203350 7206468 -141577004 + HERVH LTR ERV1 1 3290 -4423 3084 124 8 6 chr11 7206458 7206959 -141576513 + HERVH LTR ERV1 3492 3993 -3720 * 4121 139 1 3 chr11 7206961 7207624 -141575848 + HERVH LTR ERV1 4488 5149 -2564 1325 124 18 9 chr11 7207625 7207843 -141575629 + HERVH LTR ERV1 5600 5819 -1894 2393 75 48 3 chr11 7207843 7208216 -141575256 + HERVH LTR ERV1 7324 7713 0 3480 58 0 7 chr11 7208216 7208667 -141574805 + LTR7 LTR ERV1 1 448 -2 453 215 15 15 chr11 7208667 7208797 -141574675 + MER93b LTR ERV1 244 373 0 770 198 80 0 chr11 7209334 7209496 -141573976 - MER5A DNA MER1_type -2 187 13 312 192 0 90 chr11 7209539 7209617 -141573855 + MIR SINE MIR 183 253 -9 486 136 62 0 chr11 7210056 7210137 -141573335 + LTR54B LTR ERV1 1 86 -412 3145 121 0 0 chr11 7210137 7210615 -141572857 + MER41B LTR ERV1 1 478 -157 1264 188 88 40 chr11 7210612 7211181 -141572291 - LTR48B LTR ERV1 -21 614 1 * 324 192 0 0 chr11 7211181 7211252 -141572220 + MER57A LTR ERV1 331 401 -2 2141 129 7 0 chr11 7211334 7211644 -141571828 + AluSq SINE Alu 1 312 -1 2401 130 35 21 chr11 7212129 7212560 -141570912 - LTR23 LTR ERV1 0 437 1 5328 164 31 22 chr11 7212657 7214043 -141569429 - LTR23-int LTR ERV1 -101 5699 4415 2887 43 13 5 chr11 7214210 7214586 -141568886 + LTR10C LTR ERV1 1 379 -212 2133 143 35 20 chr11 7214589 7214995 -141568477 + LTR3 LTR ERVK 5 416 -16 23955 132 20 13 chr11 7215057 7219311 -141564161 + HERVK3 LTR ERVK 2 4226 -1719 1506 130 41 0 chr11 7219311 7219557 -141563915 + L1PA15 LINE L1 5910 6165 0 23955 132 20 13 chr11 7219557 7219579 -141563893 + HERVK3 LTR ERVK 4226 4246 -1699 216 0 0 0 chr11 7219579 7219603 -141563869 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 23955 132 20 13 chr11 7219603 7220292 -141563180 + HERVK3 LTR ERVK 4246 5238 -707 2311 84 0 3 chr11 7220292 7220588 -141562884 - AluY SINE Alu -16 295 1 23955 132 20 13 chr11 7220588 7220957 -141562515 + HERVK3 LTR ERVK 5238 5603 -342 653 106 0 0 chr11 7220953 7221047 -141562425 + HERVK3 LTR ERVK 7150 7243 0 * 2137 165 14 17 chr11 7221051 7221464 -141562008 + LTR3 LTR ERVK 5 416 -16 1688 65 9 0 chr11 7221486 7221703 -141561769 + LTR10C LTR ERV1 373 591 0 1189 175 37 20 chr11 7221742 7221988 -141561484 + MLT1B LTR MaLR 3 252 -138 521 195 65 0 chr11 7221983 7222106 -141561366 + LTR23 LTR ERV1 11 141 -296 * 2500 72 0 3 chr11 7222200 7222505 -141560967 - AluY SINE Alu -7 304 1 668 209 36 0 chr11 7223147 7223343 -141560129 - L1ME3A LINE L1 -219 5951 5749 799 114 15 0 chr11 7223438 7223569 -141559903 + LTR23 LTR ERV1 167 299 -138 749 189 0 0 chr11 7223577 7223704 -141559768 + FLAM_C SINE Alu 2 128 -5 614 196 0 29 chr11 7223721 7223859 -141559613 + LTR23 LTR ERV1 293 426 -11 632 193 21 21 chr11 7223965 7224105 -141559367 + LTR23 LTR ERV1 298 437 0 793 161 35 0 chr11 7224105 7224248 -141559224 + MLT1B LTR MaLR 240 387 -3 1845 171 34 0 chr11 7224410 7224703 -141558769 - AluJo SINE Alu -9 303 1 1019 189 137 107 chr11 7224962 7225458 -141558014 + MER67D LTR ERV1 1 511 -3 681 224 63 40 chr11 7225510 7225733 -141557739 + MER110A LTR ERV1 17 244 -224 261 318 56 19 chr11 7226060 7226167 -141557305 - MLT-int LTR MaLR -1219 516 406 345 47 0 0 chr11 7226503 7226546 -141556926 + (TG)n Simple_repeat Simple_repeat 2 44 0 476 280 109 71 chr11 7226628 7227237 -141556235 - L2 LINE L2 -5 3308 2653 861 125 0 0 chr11 7227762 7227882 -141555590 + FLAM_C SINE Alu 6 125 -18 439 282 213 23 chr11 7227882 7228098 -141555374 - MIR SINE MIR -5 257 1 1911 194 94 2 chr11 7228924 7229393 -141554079 + Charlie1b DNA MER1_type 6 517 -6 504 276 115 21 chr11 7230604 7230820 -141552652 - MIR SINE MIR -4 258 30 320 351 98 65 chr11 7230863 7231056 -141552416 - L2 LINE L2 -5 3267 3057 470 46 15 0 chr11 7231056 7231121 -141552351 + (TCTA)n Simple_repeat Simple_repeat 2 67 0 320 351 98 65 chr11 7231121 7231252 -141552220 - L2 LINE L2 -215 3057 2932 460 86 57 0 chr11 7231353 7231423 -141552049 + U6 snRNA snRNA 1 74 -33 354 356 86 29 chr11 7231682 7231960 -141551512 - L2 LINE L2 -565 2749 2456 24 100 0 0 chr11 7232083 7232163 -141551309 + AT_rich Low_complexity Low_complexity 1 80 0 2277 128 0 0 chr11 7232213 7232525 -141550947 + AluSx SINE Alu 1 312 0 29 70 0 0 chr11 7232697 7232754 -141550718 + AT_rich Low_complexity Low_complexity 1 57 0 2032 167 0 0 chr11 7232805 7233117 -141550355 + AluSx SINE Alu 1 312 0 1562 109 0 0 chr11 7233395 7233605 -141549867 - AluY SINE Alu 0 311 102 453 331 61 32 chr11 7233609 7234137 -141549335 - HAL1 LINE L1 -823 1684 1142 1755 154 37 20 chr11 7234387 7234686 -141548786 - AluJb SINE Alu -5 307 4 22 0 0 0 chr11 7234852 7234874 -141548598 + AT_rich Low_complexity Low_complexity 1 22 0 518 318 92 32 chr11 7235611 7236196 -141547276 - L1M4 LINE L1 -2846 3300 2681 180 158 0 0 chr11 7236219 7236257 -141547215 + (CA)n Simple_repeat Simple_repeat 1 38 0 3876 138 150 118 chr11 7236539 7237771 -141545701 + MER52C LTR ERV1 8 1278 0 750 274 82 50 chr11 7238288 7238704 -141544768 - LTR33 LTR ERVL -4 517 89 218 105 26 0 chr11 7238704 7238742 -141544730 + (TG)n Simple_repeat Simple_repeat 1 39 0 1594 168 14 25 chr11 7239117 7239431 -141544041 - AluJo SINE Alu 0 311 1 549 293 134 41 chr11 7239842 7240485 -141542987 - L1ME4a LINE L1 -46 6075 5376 182 89 54 18 chr11 7240528 7240584 -141542888 + (TA)n Simple_repeat Simple_repeat 2 59 0 308 301 78 39 chr11 7240842 7241048 -141542424 - L1ME4a LINE L1 -1164 4982 4769 2729 125 14 14 chr11 7241877 7242301 -141541171 + MSTA LTR MaLR 4 427 -1 249 102 82 0 chr11 7243153 7243202 -141540270 + L1MB8 LINE L1 5890 5942 -236 * 1865 165 31 21 chr11 7243199 7243618 -141539854 - L1MB7 LINE L1 -203 6792 6370 * 2581 213 48 4 chr11 7243608 7244340 -141539132 - L1MB7 LINE L1 -3152 3805 3042 705 152 10 76 chr11 7244380 7244578 -141538894 + L1MB7 LINE L1 5267 5451 -733 1078 167 19 0 chr11 7244607 7244823 -141538649 + L1MB7 LINE L1 5648 5867 -317 503 256 5 46 chr11 7244840 7245059 -141538413 - L1MB7 LINE L1 -3897 3062 2853 1754 249 54 33 chr11 7245059 7245574 -141537898 - L1MB7 LINE L1 -6333 526 1 * 1982 173 32 42 chr11 7245559 7246108 -141537364 - L1M4 LINE L1 -733 5451 4902 1379 285 106 29 chr11 7246354 7247427 -141536045 - HAL1 LINE L1 -1 2506 1351 238 197 98 0 chr11 7247740 7247801 -141535671 + L1ME LINE L1 5581 5647 -474 250 169 31 0 chr11 7248283 7248348 -141535124 + (TA)n Simple_repeat Simple_repeat 2 68 0 305 317 48 27 chr11 7248938 7249124 -141534348 - L1 LINE L1 -2334 3812 3623 2573 70 0 3 chr11 7250245 7250557 -141532915 + AluY SINE Alu 1 311 0 426 337 75 33 chr11 7250707 7251039 -141532433 + HAL1 LINE L1 1108 1453 -1054 2049 151 0 0 chr11 7252111 7252410 -141531062 - AluSx SINE Alu -13 299 1 755 157 8 0 chr11 7252616 7252737 -141530735 + AluJ SINE Alu 1 122 -180 1474 74 0 16 chr11 7252875 7253064 -141530408 - AluY SINE Alu -125 186 1 990 163 52 0 chr11 7253074 7253227 -141530245 + AluJ SINE Alu 130 290 -22 2251 89 10 3 chr11 7253571 7253874 -141529598 + AluSc SINE Alu 1 305 -4 386 358 72 21 chr11 7253883 7254162 -141529310 + L2 LINE L2 2564 2856 -458 40613 35 21 2 chr11 7254176 7260212 -141523260 - L1PA2 LINE L1 0 6155 1 199 258 0 45 chr11 7260261 7260327 -141523145 + L2 LINE L2 2911 2973 -340 21 57 0 0 chr11 7260713 7260748 -141522724 + AT_rich Low_complexity Low_complexity 1 35 0 2732 46 6 6 chr11 7260924 7261272 -141522200 - L1PA8 LINE L1 -7 6165 5818 2315 54 6 9 chr11 7261272 7261587 -141521885 + L1P3 LINE L1 5402 5715 -457 260 157 100 14 chr11 7262495 7262565 -141520907 - L1MA9 LINE L1 -22 6290 6215 436 333 59 34 chr11 7262664 7262868 -141520604 + MIR SINE MIR 44 252 -10 272 274 147 10 chr11 7263171 7263273 -141520199 - MIR3 SINE MIR -90 118 3 211 237 68 0 chr11 7263358 7263417 -141520055 - L2 LINE L2 0 3272 3210 518 305 147 13 chr11 7263896 7264371 -141519101 - L1ME4a LINE L1 -253 5868 5330 25 65 0 0 chr11 7264441 7264487 -141518985 + AT_rich Low_complexity Low_complexity 1 46 0 228 163 0 0 chr11 7265119 7265162 -141518310 + GA-rich Low_complexity Low_complexity 1 43 0 216 0 0 0 chr11 7265262 7265286 -141518186 + (GA)n Simple_repeat Simple_repeat 1 24 0 257 301 96 0 chr11 7266329 7266412 -141517060 - MIR SINE MIR -88 174 84 33 25 0 0 chr11 7267633 7267673 -141515799 + AT_rich Low_complexity Low_complexity 1 40 0 335 280 51 34 chr11 7269632 7269750 -141513722 - L2 LINE L2 -4 3268 3149 2299 95 13 0 chr11 7270293 7270599 -141512873 + AluSg SINE Alu 1 310 0 413 391 66 0 chr11 7273124 7273321 -141510151 - L2 LINE L2 -2 3270 3061 1788 58 4 0 chr11 7273648 7273874 -141509598 + L1PA12 LINE L1 5938 6164 -4 449 271 87 64 chr11 7273921 7274055 -141509417 - L1MC/D LINE L1 -747 5399 5269 2026 130 0 35 chr11 7274055 7274371 -141509101 + AluSc SINE Alu 1 305 -4 449 271 87 64 chr11 7274371 7274885 -141508587 - L1MC/D LINE L1 -877 5269 5120 24 0 0 0 chr11 7274925 7274949 -141508523 + AT_rich Low_complexity Low_complexity 1 24 0 2179 141 20 0 chr11 7275051 7275392 -141508080 - MER7A DNA MER2_type 0 346 1 409 305 65 45 chr11 7275621 7276237 -141507235 - L1MC/D LINE L1 -1457 4689 4062 254 293 40 30 chr11 7276264 7276363 -141507109 - L2 LINE L2 -305 2967 2868 886 269 63 12 chr11 7276375 7276758 -141506714 - MER115 DNA AcHobo 0 693 238 2753 173 26 116 chr11 7276777 7277151 -141506321 - L1PA14 LINE L1 -26 6135 5864 7079 47 27 0 chr11 7277151 7278295 -141505177 - L1PA6 LINE L1 -4 6150 4984 2753 173 26 116 chr11 7278295 7278688 -141504784 - L1PA14 LINE L1 -297 5864 5437 490 114 13 0 chr11 7278686 7278765 -141504707 + L1 LINE L1 4740 4819 -1327 * 4577 154 29 25 chr11 7278766 7280045 -141503427 + L1PA16 LINE L1 4868 6154 -12 456 245 35 14 chr11 7280120 7280263 -141503209 + L1M4 LINE L1 2382 2527 -3619 547 226 132 0 chr11 7280310 7280500 -141502972 + L1ME3A LINE L1 5736 5950 -220 786 300 45 16 chr11 7281335 7281582 -141501890 + LTR16A LTR ERVL 179 432 -18 * 1265 214 33 63 chr11 7281581 7281775 -141501697 - MLT1A2 LTR MaLR -20 354 175 363 23 0 0 chr11 7281775 7281819 -141501653 + (GA)n Simple_repeat Simple_repeat 1 44 0 1265 214 33 63 chr11 7281819 7281989 -141501483 - MLT1A2 LTR MaLR -199 175 1 1468 304 55 16 chr11 7282008 7282573 -141500899 + HERV16 LTR ERVL 38 624 -4372 1535 303 35 0 chr11 7282802 7283258 -141500214 + HERV16 LTR ERVL 927 1398 -3598 2072 269 87 56 chr11 7283287 7284220 -141499252 + HERV16 LTR ERVL 1613 2574 -2422 560 121 30 0 chr11 7284232 7284364 -141499108 + (TA)n Simple_repeat Simple_repeat 1 136 0 2273 101 0 0 chr11 7284729 7285026 -141498446 + AluSg SINE Alu 1 297 -13 279 316 44 53 chr11 7285038 7285152 -141498320 + MIR SINE MIR 17 129 -133 210 204 20 0 chr11 7285190 7285239 -141498233 + (TA)n Simple_repeat Simple_repeat 2 51 0 726 239 34 29 chr11 7285314 7285519 -141497953 + L2 LINE L2 3108 3313 0 705 249 29 0 chr11 7285807 7285980 -141497492 + MER5B DNA MER1_type 1 178 0 344 182 0 0 chr11 7285985 7286040 -141497432 - MER5A DNA MER1_type -2 187 133 205 240 13 27 chr11 7286442 7286517 -141496955 + A-rich Low_complexity Low_complexity 2 75 0 430 310 60 8 chr11 7286731 7287036 -141496436 - L1P2 LINE L1 -319 5835 5509 360 216 74 99 chr11 7287199 7287361 -141496111 + L2 LINE L2 3156 3313 0 1869 195 82 47 chr11 7287422 7287910 -141495562 - MLT1D LTR MaLR 0 505 1 1492 232 40 96 chr11 7287910 7288410 -141495062 - MLT1D-int LTR MaLR 0 1371 900 528 283 29 0 chr11 7288553 7288691 -141494781 - MLT1D-int LTR MaLR -484 887 746 957 225 22 5 chr11 7288701 7288923 -141494549 - MLT1D-int LTR MaLR -855 516 291 674 251 9 48 chr11 7288926 7289020 -141494452 + L1M4 LINE L1 2192 2288 -3858 2219 119 0 10 chr11 7289020 7289331 -141494141 + AluSg SINE Alu 1 308 -2 674 251 9 48 chr11 7289331 7289460 -141494012 + L1M4 LINE L1 2288 2408 -3738 1562 189 3 19 chr11 7289460 7289783 -141493689 + L1MD1 LINE L1 5925 6242 0 1595 182 3 55 chr11 7290001 7290308 -141493164 - AluJo SINE Alu -20 292 2 239 338 104 24 chr11 7290587 7290829 -141492643 - MIR SINE MIR -3 259 2 203 88 29 0 chr11 7291110 7291144 -141492328 + (TG)n Simple_repeat Simple_repeat 1 35 0 204 288 0 0 chr11 7291822 7291881 -141491591 - L3 LINE CR1 -158 1419 1361 2392 304 58 27 chr11 7292983 7293906 -141489566 + L2 LINE L2 221 1172 -2142 25 31 0 0 chr11 7296317 7296349 -141487123 + AT_rich Low_complexity Low_complexity 1 32 0 29 0 0 0 chr11 7296475 7296504 -141486968 + AT_rich Low_complexity Low_complexity 1 29 0 2003 119 0 10 chr11 7297299 7297593 -141485879 + AluSq SINE Alu 1 291 -22 21 0 0 0 chr11 7297593 7297614 -141485858 + AT_rich Low_complexity Low_complexity 1 21 0 2062 271 29 13 chr11 7297967 7298766 -141484706 + L1M4 LINE L1 1 1280 -5929 7261 121 9 6 chr11 7298866 7300222 -141483250 - L1P2 LINE L1 -571 5583 4226 5802 153 34 26 chr11 7300322 7301452 -141482020 - HERVH LTR ERV1 -6156 1557 420 6875 59 10 10 chr11 7302673 7303114 -141480358 + L1PA7 LINE L1 5039 5479 -675 2422 82 0 0 chr11 7303114 7303417 -141480055 + AluY SINE Alu 1 303 -8 6875 59 10 10 chr11 7303417 7304077 -141479395 + L1PA7 LINE L1 5478 6140 -14 403 240 70 63 chr11 7304211 7304419 -141479053 + L1M4 LINE L1 5099 5307 -1901 8681 143 17 9 chr11 7304509 7307097 -141476375 - L1MA2 LINE L1 0 7723 5122 6769 140 33 8 chr11 7307098 7308561 -141474911 - L1MA2 LINE L1 -3594 3971 2469 9771 55 9 2 chr11 7308620 7310643 -141472829 - L1PA6 LINE L1 0 6154 4117 20723 37 0 0 chr11 7310643 7313182 -141470290 + L1PA6 LINE L1 1575 4114 -2032 471 63 0 0 chr11 7313188 7313251 -141470221 - L1P4 LINE L1 -349 5819 5757 4856 116 69 42 chr11 7313253 7314389 -141469083 + MER11A LTR ERVK 1 1266 0 5599 173 50 10 chr11 7314390 7316208 -141467264 - L1P4 LINE L1 -406 5759 3868 2539 84 21 32 chr11 7316263 7316642 -141466830 + THE1C LTR MaLR 1 375 0 372 280 0 10 chr11 7316868 7316968 -141466504 + MER72 LTR ERV1 278 376 -346 8849 206 85 2 chr11 7316977 7318938 -141464534 - L1M2 LINE L1 -4722 2127 4 335 269 130 22 chr11 7319274 7319698 -141463774 + L1ME LINE L1 1332 1820 -5127 271 229 0 12 chr11 7319711 7319794 -141463678 - L1M LINE L1 -822 5344 5263 640 256 58 0 chr11 7319798 7319970 -141463502 - MER58A DNA MER1_type 0 224 43 338 216 144 0 chr11 7320001 7320112 -141463360 - L1M4 LINE L1 -880 5266 5140 727 218 74 10 chr11 7320112 7320389 -141463083 - MLT1A2 LTR MaLR 0 390 2 922 271 44 5 chr11 7320411 7320847 -141462625 - L1M4 LINE L1 -1021 5125 4673 255 125 0 0 chr11 7321027 7321067 -141462405 + (TA)n Simple_repeat Simple_repeat 1 40 0 2112 142 0 3 chr11 7321067 7321369 -141462103 - AluSx SINE Alu -11 301 1 6722 171 33 5 chr11 7321379 7321808 -141461664 - L1PA14 LINE L1 -4 6157 5742 2355 111 16 32 chr11 7321808 7322178 -141461294 - THE1B LTR MaLR 0 364 1 6722 171 33 5 chr11 7322178 7322265 -141461207 - L1PA14 LINE L1 -419 5742 5659 2334 145 6 11 chr11 7322265 7322631 -141460841 - THE1B LTR MaLR 0 364 1 6722 171 33 5 chr11 7322631 7324254 -141459218 - L1PA14 LINE L1 -502 5659 3988 880 219 0 9 chr11 7324256 7324466 -141459006 - L1PA14 LINE L1 -2675 3471 3264 2179 105 10 0 chr11 7324889 7325185 -141458287 - AluSg SINE Alu -11 299 1 1929 138 4 4 chr11 7325523 7325799 -141457673 - AluSx SINE Alu -36 276 1 1726 192 39 0 chr11 7325807 7326088 -141457384 - AluJb SINE Alu -20 292 1 563 250 87 23 chr11 7326731 7326903 -141456569 + MIR SINE MIR 6 188 -74 22 70 0 0 chr11 7326916 7326959 -141456513 + AT_rich Low_complexity Low_complexity 1 43 0 269 306 34 41 chr11 7328939 7329086 -141454386 - MIR SINE MIR -17 245 100 660 307 21 56 chr11 7329366 7329744 -141453728 + L1MDa LINE L1 38 402 -6138 4287 156 32 32 chr11 7329769 7330552 -141452920 - LTR39 LTR ERV1 0 783 1 2294 215 70 25 chr11 7331043 7331839 -141451633 + L1MDa LINE L1 1017 1848 -4692 2151 203 30 59 chr11 7331857 7332004 -141451468 - L1MA9 LINE L1 -34 6278 6128 2073 125 6 6 chr11 7332004 7332339 -141451133 + L1MA3 LINE L1 5971 6305 0 2151 203 30 59 chr11 7332339 7332808 -141450664 - L1MA9 LINE L1 -184 6128 5647 186 71 0 0 chr11 7332808 7332836 -141450636 + (CA)n Simple_repeat Simple_repeat 2 29 0 2151 203 30 59 chr11 7332836 7333163 -141450309 - L1MA9 LINE L1 -665 5647 5312 16118 49 0 1 chr11 7333163 7335942 -141447530 - L1PA5 LINE L1 0 6154 3375 2151 203 30 59 chr11 7335942 7336547 -141446925 - L1MA9 LINE L1 -1000 5312 4794 438 114 34 0 chr11 7336571 7336659 -141446813 - L1MB2 LINE L1 -3 6168 6078 1177 126 16 16 chr11 7336659 7336833 -141446639 + AluSp SINE Alu 136 312 -1 3075 147 16 96 chr11 7336833 7337574 -141445898 - L1MB3 LINE L1 -86 6097 5416 593 210 13 49 chr11 7337565 7337798 -141445674 - L1MA9 LINE L1 -1338 4808 4425 * 1947 159 7 7 chr11 7337798 7338099 -141445373 + AluSx SINE Alu 1 301 -11 593 210 13 49 chr11 7338099 7338167 -141445305 - L1MA9 LINE L1 -1721 4425 4356 642 222 31 43 chr11 7338171 7338420 -141445052 - L1MA4 LINE L1 -5 6295 6060 2271 123 0 0 chr11 7338420 7338730 -141444742 - AluSg SINE Alu 0 310 1 1994 138 17 3 chr11 7338733 7339023 -141444449 - AluSg SINE Alu -11 299 6 2102 202 259 18 chr11 7339051 7339896 -141443576 - L1MA9 LINE L1 -1774 4372 3324 9987 200 11 11 chr11 7340698 7343014 -141440458 - L1PA12 LINE L1 -2814 4770 2454 234 0 0 0 chr11 7343019 7343045 -141440427 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 5406 203 5 5 chr11 7343048 7344133 -141439339 - L1PA12 LINE L1 -5874 1707 610 332 316 107 25 chr11 7344531 7344727 -141438745 - MIR SINE MIR -30 232 21 319 325 114 42 chr11 7344753 7344990 -141438482 + L3 LINE CR1 1006 1259 -318 21 0 0 0 chr11 7345274 7345295 -141438177 + AT_rich Low_complexity Low_complexity 1 21 0 2434 240 47 6 chr11 7346404 7347124 -141436348 - L1ME1 LINE L1 0 6166 5417 259 159 32 0 chr11 7347193 7347256 -141436216 - L1MDa LINE L1 -3988 2552 2488 37 81 0 0 chr11 7347256 7347342 -141436130 + AT_rich Low_complexity Low_complexity 1 86 0 543 139 16 16 chr11 7347372 7347501 -141435971 - L1MDa LINE L1 -3988 2552 2424 * 1375 221 56 20 chr11 7347500 7347998 -141435474 - L1ME1 LINE L1 -772 5374 4859 361 60 20 0 chr11 7347999 7348049 -141435423 - LTR57 LTR ERVL -360 51 1 4792 160 10 29 chr11 7348051 7348914 -141434558 - LTR57-int LTR ERVL -2 5341 4495 231 153 68 0 chr11 7348914 7348973 -141434499 + L1MA7 LINE L1 6229 6291 0 25 31 0 0 chr11 7349139 7349171 -141434301 + AT_rich Low_complexity Low_complexity 1 32 0 295 280 90 70 chr11 7349451 7349651 -141433821 - L2 LINE L2 -143 3129 2926 23 0 0 0 chr11 7351566 7351589 -141431883 + AT_rich Low_complexity Low_complexity 1 23 0 195 293 17 0 chr11 7351710 7351768 -141431704 - L2 LINE L2 -1 3271 3213 * 788 282 28 5 chr11 7351739 7351952 -141431520 - MIR SINE MIR -25 237 20 252 306 217 0 chr11 7351955 7352112 -141431360 - MIR SINE MIR -71 191 1 1565 68 10 14 chr11 7352428 7352635 -141430837 - AluY SINE Alu 0 311 106 7010 42 36 1 chr11 7353003 7353843 -141429629 - L1PA5 LINE L1 -5 6149 5340 200 59 29 0 chr11 7353843 7353877 -141429595 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 7010 42 36 1 chr11 7353877 7354646 -141428826 - L1PA5 LINE L1 -814 5340 4510 345 24 0 0 chr11 7354647 7354689 -141428783 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 7677 20 0 4 chr11 7354689 7355704 -141427768 - L1PA3 LINE L1 -13 6142 5129 31422 60 2 12 chr11 7355704 7360007 -141423465 - L1PA5 LINE L1 -1629 4517 258 505 342 58 38 chr11 7360943 7361531 -141421941 - L2 LINE L2 0 3313 2665 1305 307 50 12 chr11 7361531 7362013 -141421459 - MLT1H1 LTR MaLR -55 500 1 3321 218 32 5 chr11 7362657 7363409 -141420063 + L1MB8 LINE L1 5406 6177 -1 2331 78 14 0 chr11 7363551 7363675 -141419797 + AluY SINE Alu 1 122 -189 333 0 0 0 chr11 7363675 7363712 -141419760 + (CA)n Simple_repeat Simple_repeat 2 38 0 2331 78 14 0 chr11 7363712 7363882 -141419590 + AluY SINE Alu 122 299 -12 241 336 0 9 chr11 7364182 7364295 -141419177 - MLT1-int LTR MaLR -862 509 398 382 341 54 48 chr11 7364410 7364489 -141418983 - L2 LINE L2 -1023 2291 2214 1151 200 82 53 chr11 7364489 7364844 -141418628 + MLT1A1 LTR MaLR 1 365 0 382 341 54 48 chr11 7364844 7365095 -141418377 - L2 LINE L2 -1100 2214 1959 793 123 142 112 chr11 7365491 7365514 -141417958 - Tigger3(Golem) DNA MER2_type -357 2672 2651 1041 123 0 0 chr11 7365514 7365693 -141417779 + (TA)n Simple_repeat Simple_repeat 2 180 0 793 123 142 112 chr11 7365693 7365841 -141417631 - Tigger3(Golem) DNA MER2_type -378 2651 2488 1768 164 0 11 chr11 7365841 7366115 -141417357 - AluJb SINE Alu -39 273 3 793 123 142 112 chr11 7366115 7366210 -141417262 - Tigger3(Golem) DNA MER2_type -541 2488 2397 183 100 0 0 chr11 7366210 7366240 -141417232 + (TA)n Simple_repeat Simple_repeat 2 31 0 40 101 0 0 chr11 7366313 7366451 -141417021 + AT_rich Low_complexity Low_complexity 1 138 0 999 278 165 5 chr11 7366518 7366949 -141416523 - LTR33 LTR ERVL -21 500 1 5785 135 113 5 chr11 7367914 7368409 -141415063 - Tigger3b DNA MER2_type -1797 1231 791 1670 168 7 11 chr11 7368409 7368683 -141414789 - AluJb SINE Alu -39 273 1 5785 135 113 5 chr11 7368683 7369298 -141414174 - Tigger3b DNA MER2_type -2237 791 1 2092 99 34 0 chr11 7369668 7369961 -141413511 - AluY SINE Alu -8 303 1 389 257 159 1 chr11 7370568 7370728 -141412744 + MER20B DNA MER1_type 31 215 -4 4319 71 0 17 chr11 7370775 7371352 -141412120 - L1PA8 LINE L1 -3 6169 5603 318 224 0 0 chr11 7371494 7371552 -141411920 - L2 LINE L2 -12 3301 3244 233 333 0 0 chr11 7371635 7371695 -141411777 + L2 LINE L2 2997 3056 -257 266 261 87 29 chr11 7372513 7372944 -141410528 + L1MEd LINE L1 865 1396 -4914 7075 36 21 0 chr11 7372967 7373835 -141409637 - L1P LINE L1 -1541 4605 3720 2117 170 28 19 chr11 7373835 7374339 -141409133 - MLT2A2 LTR ERVL -46 508 1 2383 172 11 5 chr11 7374480 7374893 -141408579 - MLT1C LTR MaLR -57 405 1 2014 134 3 19 chr11 7376963 7377270 -141406202 + AluSx SINE Alu 1 302 -10 2114 104 3 13 chr11 7378731 7379029 -141404443 + AluSx SINE Alu 3 297 -15 203 331 71 47 chr11 7379032 7379159 -141404313 + L2 LINE L2 2356 2485 -829 412 309 65 29 chr11 7380016 7380251 -141403221 + MIR SINE MIR 3 245 -17 7211 204 71 32 chr11 7381223 7382300 -141401172 - L1 LINE L1 -1181 4965 3932 1731 174 10 10 chr11 7382300 7382610 -141400862 - AluJo SINE Alu -2 310 1 7211 204 71 32 chr11 7382610 7382726 -141400746 - L1 LINE L1 -2214 3932 3822 2318 109 0 0 chr11 7382726 7383028 -141400444 - AluSq SINE Alu -11 302 1 7211 204 71 32 chr11 7383028 7383880 -141399592 - L1 LINE L1 -2324 3822 2839 41922 32 30 2 chr11 7383892 7389875 -141393597 - L1PA2 LINE L1 -1 6154 1 1265 269 97 6 chr11 7389876 7390371 -141393101 - L1 LINE L1 -3292 2854 2315 5125 179 29 13 chr11 7390387 7392317 -141391155 - L1PB4 LINE L1 -5 6151 4193 3800 232 57 41 chr11 7392333 7393049 -141390423 + L1M4 LINE L1 4012 4716 -1462 2033 130 11 0 chr11 7393049 7393333 -141390139 + AluSx SINE Alu 1 287 -25 3800 232 57 41 chr11 7393333 7394048 -141389424 + L1M4 LINE L1 4716 5461 -717 400 279 53 37 chr11 7394373 7394563 -141388909 - L1M4 LINE L1 -2697 3449 3257 504 176 0 0 chr11 7394599 7394701 -141388771 + CT-rich Low_complexity Low_complexity 3 104 0 216 135 0 0 chr11 7394808 7394845 -141388627 + (CA)n Simple_repeat Simple_repeat 2 38 0 254 360 75 6 chr11 7397285 7397446 -141386026 - MIR SINE MIR -5 257 86 252 361 23 23 chr11 7397582 7397712 -141385760 - L2 LINE L2 -263 3050 2921 187 359 34 60 chr11 7397826 7398060 -141385412 + L2 LINE L2 2185 2412 -902 328 264 27 18 chr11 7398399 7398509 -141384963 - MIR SINE MIR -78 184 74 843 300 38 54 chr11 7401298 7401744 -141381728 + LTR16A1 LTR ERVL 19 457 0 224 30 30 0 chr11 7401841 7401874 -141381598 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 2263 225 52 2 chr11 7402201 7402810 -141380662 + L1 LINE L1 959 1598 -4543 1312 199 4 0 chr11 7402808 7403075 -141380397 + L1 LINE L1 5021 5288 -922 * 2033 117 25 0 chr11 7403075 7403378 -141380094 + AluSx SINE Alu 1 310 0 5782 185 52 84 chr11 7403398 7404139 -141379333 - L1P LINE L1 -1116 5030 4267 7785 16 1 1 chr11 7404139 7405217 -141378255 + L1PA3 LINE L1 5078 6155 0 5782 185 52 84 chr11 7405217 7406560 -141376912 - L1P LINE L1 -1879 4267 3013 638 188 57 17 chr11 7406570 7406746 -141376726 + L1 LINE L1 4427 4609 -1537 1040 167 0 32 chr11 7406750 7406936 -141376536 - MER46A DNA MER2_type -56 180 1 1130 237 87 11 chr11 7406936 7407294 -141376178 + L1MDa LINE L1 1503 1887 -4653 1366 194 26 23 chr11 7614990 7615340 -141168132 + L1M4 LINE L1 4635 4985 -1161 1568 177 0 18 chr11 7615440 7615717 -141167755 + AluJb SINE Alu 27 298 -14 236 303 91 40 chr11 7615865 7616040 -141167432 + MIR3 SINE MIR 21 204 -4 279 281 125 0 chr11 7618484 7618580 -141164892 - MIR SINE MIR -131 131 24 253 266 121 57 chr11 7618759 7618883 -141164589 - L2 LINE L2 0 3272 3141 578 201 175 36 chr11 7619418 7619612 -141163860 - L2 LINE L2 -1119 2195 1975 442 279 21 14 chr11 7619679 7619819 -141163653 + L2 LINE L2 1524 1664 -1650 1419 175 46 4 chr11 7619832 7620095 -141163377 + AluJo SINE Alu 6 279 -33 348 194 0 37 chr11 7620104 7620212 -141163260 + GA-rich Low_complexity Low_complexity 1 104 0 791 231 57 5 chr11 7620215 7620427 -141163045 + L2 LINE L2 1699 1921 -1393 1758 153 3 3 chr11 7622179 7622474 -141160998 + AluJo SINE Alu 15 309 -3 1336 137 32 40 chr11 7622638 7622887 -141160585 - AluJo SINE Alu 0 312 66 246 305 156 24 chr11 7622895 7623062 -141160410 + L2 LINE L2 2715 2903 -411 945 153 68 40 chr11 7623247 7623424 -141160048 + MER58A DNA MER1_type 43 224 0 265 358 96 3 chr11 7623545 7623809 -141159663 - L2 LINE L2 -241 3031 2738 298 364 71 7 chr11 7624386 7624540 -141158932 + MIR3 SINE MIR 22 185 -23 1424 163 77 52 chr11 7626073 7626398 -141157074 - MER44D DNA MER2_type 0 609 7 271 290 130 23 chr11 7626512 7626643 -141156829 - MER5A DNA MER1_type -22 167 23 263 356 19 0 chr11 7628741 7628845 -141154627 + MIR3 SINE MIR 81 186 -22 469 265 94 18 chr11 7629517 7629687 -141153785 + MER63A DNA MER1_type 27 209 -1 676 261 19 12 chr11 7630024 7630185 -141153287 - MIR SINE MIR -49 213 52 685 197 24 8 chr11 7631181 7631308 -141152164 - L2 LINE L2 -1 3312 3184 204 217 33 17 chr11 7631873 7631933 -141151539 - L2 LINE L2 -75 3238 3178 436 281 66 37 chr11 7632141 7632284 -141151188 + MIR3 SINE MIR 19 165 -97 2111 97 7 16 chr11 7632284 7632594 -141150878 + AluSq SINE Alu 1 307 -6 436 281 66 37 chr11 7632594 7632667 -141150805 + MIR3 SINE MIR 165 234 -28 1091 267 80 48 chr11 7632810 7633289 -141150183 + MLT1H LTR MaLR 14 549 0 211 222 37 19 chr11 7633971 7634025 -141149447 - L2 LINE L2 -1 3312 3258 695 146 0 85 chr11 7634025 7634155 -141149317 + AluJb SINE Alu 179 297 -15 1247 283 103 39 chr11 7634155 7634928 -141148544 - L2 LINE L2 -65 3248 2419 615 244 100 44 chr11 7634928 7635157 -141148315 - L2 LINE L2 -1058 2256 2015 1563 108 0 0 chr11 7635345 7635557 -141147915 + AluSg/x SINE Alu 89 300 -12 673 254 66 31 chr11 7636257 7636485 -141146987 + MIR SINE MIR 21 256 -6 525 307 0 13 chr11 7636536 7636689 -141146783 + MIR3 SINE MIR 16 166 -42 2118 103 0 0 chr11 7636709 7636999 -141146473 - AluSx SINE Alu -22 290 1 798 262 78 25 chr11 7637505 7637749 -141145723 + MIR SINE MIR 6 262 0 2043 123 7 0 chr11 7637790 7638083 -141145389 - AluSx SINE Alu -17 295 1 1586 166 51 10 chr11 7638084 7638380 -141145092 - AluJb SINE Alu -4 308 1 1954 143 7 3 chr11 7638397 7638705 -141144767 - AluSx SINE Alu -2 310 2 1647 164 11 28 chr11 7639842 7640129 -141143343 + AluJo SINE Alu 1 282 -30 450 0 0 0 chr11 7640132 7640182 -141143290 + (TAA)n Simple_repeat Simple_repeat 2 51 0 1087 128 0 0 chr11 7640375 7640539 -141142933 + FAM SINE Alu 1 45 -4 2053 113 20 0 chr11 7640979 7641272 -141142200 + AluSq SINE Alu 1 299 -14 194 310 42 0 chr11 7641658 7641729 -141141743 + L2 LINE L2 2119 2192 -1122 926 314 75 26 chr11 7641808 7642261 -141141211 - L2 LINE L2 0 3313 2839 734 231 44 0 chr11 7642355 7642515 -141140957 + FRAM SINE Alu 5 171 -5 353 326 22 7 chr11 7642534 7642669 -141140803 + GA-rich Low_complexity Low_complexity 3 139 0 186 253 67 53 chr11 7643847 7643922 -141139550 + L2 LINE L2 2865 2940 -374 231 185 192 39 chr11 7644322 7644452 -141139020 + L2 LINE L2 1325 1474 -1840 898 238 27 38 chr11 7644457 7644718 -141138754 + L2 LINE L2 2717 2974 -340 2288 76 3 0 chr11 7644930 7645221 -141138251 + AluSp SINE Alu 1 292 -21 3036 231 77 7 chr11 7645229 7646214 -141137258 + L1ME3A LINE L1 5120 6168 -2 2193 101 13 0 chr11 7646293 7646601 -141136871 + AluSx SINE Alu 1 312 0 536 274 46 46 chr11 7646723 7646898 -141136574 - MIR SINE MIR -29 233 59 2076 75 85 0 chr11 7647038 7647320 -141136152 + AluSg SINE Alu 1 306 -4 2213 189 79 38 chr11 7647665 7648115 -141135357 + MER119 DNA MER1_type 1 480 -103 1820 132 35 3 chr11 7648115 7648403 -141135069 + AluSx SINE Alu 1 297 -15 2213 189 79 38 chr11 7648403 7648512 -141134960 + MER119 DNA MER1_type 480 583 0 697 296 64 27 chr11 7649500 7649797 -141133675 + L3 LINE CR1 1075 1382 -195 327 273 130 0 chr11 7649810 7649964 -141133508 + L2 LINE L2 3139 3312 -1 213 286 0 0 chr11 7650122 7650178 -141133294 + L3 LINE CR1 1519 1574 -3 1511 184 27 7 chr11 7650603 7650902 -141132570 - AluJo SINE Alu -7 305 1 255 211 19 0 chr11 7650911 7650963 -141132509 - MARNA DNA Mariner -372 214 162 1957 108 0 71 chr11 7651596 7651919 -141131553 - AluSx SINE Alu -12 300 1 831 187 0 0 chr11 7652209 7652348 -141131124 + FLAM_C SINE Alu 2 140 -3 480 280 13 38 chr11 7652573 7652730 -141130742 - MIR SINE MIR -50 212 60 440 229 76 0 chr11 7652766 7652871 -141130601 + MIR SINE MIR 150 262 0 867 151 17 62 chr11 7653030 7653209 -141130263 - FRAM SINE Alu 0 176 6 213 154 0 0 chr11 7653746 7653785 -141129687 + (TG)n Simple_repeat Simple_repeat 2 40 0 271 207 73 24 chr11 7653869 7653889 -141129583 + MER21B LTR ERV1 5 23 -840 342 0 0 0 chr11 7653889 7653927 -141129545 + (GA)n Simple_repeat Simple_repeat 2 39 0 271 207 73 24 chr11 7653927 7653988 -141129484 + MER21B LTR ERV1 23 90 -773 1179 208 69 38 chr11 7654036 7654369 -141129103 - MSTD LTR MaLR -49 379 1 810 216 61 22 chr11 7654369 7654488 -141128984 + MER21B LTR ERV1 280 410 -453 288 0 0 0 chr11 7654488 7654520 -141128952 + (CA)n Simple_repeat Simple_repeat 2 33 0 810 216 61 22 chr11 7654520 7654579 -141128893 + MER21B LTR ERV1 410 465 -398 186 229 0 0 chr11 7654719 7654754 -141128718 + MIR SINE MIR 216 250 -12 242 286 66 33 chr11 7654836 7654927 -141128545 - L2 LINE L2 -2 3270 3177 381 308 115 0 chr11 7655599 7655729 -141127743 + L2 LINE L2 3111 3255 -17 2300 59 28 0 chr11 7655813 7656100 -141127372 + AluY SINE Alu 1 295 -16 2295 95 0 6 chr11 7656192 7656507 -141126965 + AluSq SINE Alu 1 313 0 677 258 17 77 chr11 7656663 7656896 -141126576 - MIR SINE MIR -25 237 19 1734 107 14 43 chr11 7656965 7657245 -141126227 - AluSx SINE Alu -30 282 11 1600 178 15 15 chr11 7657339 7657677 -141125795 + L1M4 LINE L1 4993 5330 -816 * 4754 142 19 11 chr11 7657673 7658455 -141125017 - L1MB3 LINE L1 -142 6041 5254 668 264 84 71 chr11 7658550 7658713 -141124759 - MLT1G1 LTR MaLR -157 398 238 2307 74 3 3 chr11 7658713 7659023 -141124449 - AluSx SINE Alu -2 310 1 668 264 84 71 chr11 7659023 7659219 -141124253 - MLT1G1 LTR MaLR -317 238 10 2082 111 3 0 chr11 7659499 7659787 -141123685 + AluSx SINE Alu 1 289 -23 1600 108 0 136 chr11 7659986 7660139 -141123333 - L1PA15 LINE L1 -1 6164 6074 2089 100 7 0 chr11 7660139 7660430 -141123042 - AluSx SINE Alu -2 310 18 1600 108 0 136 chr11 7660430 7660592 -141122880 - L1PA15 LINE L1 -91 6074 5892 21 36 0 0 chr11 7660717 7660745 -141122727 + AT_rich Low_complexity Low_complexity 1 28 0 287 100 25 0 chr11 7661140 7661180 -141122292 + Alu SINE Alu 1 41 -262 194 311 170 19 chr11 7661338 7661444 -141122028 - L2 LINE L2 -5 3267 3146 280 245 75 47 chr11 7662637 7662743 -141120729 - MIR SINE MIR -126 136 28 1917 122 6 39 chr11 7662749 7663060 -141120412 - AluJb SINE Alu -11 301 1 2209 55 45 7 chr11 7663067 7663357 -141120115 - AluY SINE Alu -10 301 1 5172 164 87 88 chr11 7664248 7664495 -141118977 - Charlie1a DNA MER1_type -1306 1455 1209 1549 169 17 33 chr11 7664495 7664815 -141118657 - AluJo SINE Alu 0 312 1 5172 164 87 88 chr11 7664815 7665520 -141117952 - Charlie1a DNA MER1_type -1552 1209 505 2043 124 3 0 chr11 7665520 7665811 -141117661 - AluSp SINE Alu -21 292 1 5172 164 87 88 chr11 7665811 7665849 -141117623 - Charlie1a DNA MER1_type -2256 505 468 1980 83 34 0 chr11 7665849 7666151 -141117321 - AluSc SINE Alu 0 319 9 5172 164 87 88 chr11 7666151 7666614 -141116858 - Charlie1a DNA MER1_type -2293 468 1 249 211 77 0 chr11 7666948 7667000 -141116472 - Charlie8 DNA MER1_type -993 1424 1369 24 77 0 0 chr11 7667058 7667110 -141116362 + AT_rich Low_complexity Low_complexity 1 52 0 334 237 128 51 chr11 7667373 7667529 -141115943 + L2 LINE L2 3146 3313 0 747 183 15 0 chr11 7667627 7667758 -141115714 + FLAM_C SINE Alu 1 133 0 603 270 48 58 chr11 7668108 7668566 -141114906 + L1ME4a LINE L1 5472 5925 -196 372 325 6 44 chr11 7669956 7670120 -141113352 + MIR SINE MIR 6 160 -62 371 338 181 32 chr11 7670187 7671252 -141112220 - L2 LINE L2 -345 2969 1746 2524 40 0 0 chr11 7671264 7671562 -141111910 - AluY SINE Alu -13 298 1 801 109 39 8 chr11 7672063 7672191 -141111281 - FLAM_C SINE Alu -11 132 1 25 0 0 0 chr11 7673080 7673105 -141110367 + GC_rich Low_complexity Low_complexity 1 25 0 880 199 96 58 chr11 7673728 7673989 -141109483 + MER21B LTR ERV1 542 812 -51 441 128 32 85 chr11 7675238 7675332 -141108140 + L1MC3 LINE L1 7697 7785 0 539 289 58 0 chr11 7675385 7675541 -141107931 + MIR SINE MIR 49 213 -49 2046 123 0 16 chr11 7676284 7676601 -141106871 - AluSx SINE Alu 0 312 1 200 323 15 0 chr11 7677225 7677290 -141106182 + MIR SINE MIR 197 262 0 300 236 0 0 chr11 7677517 7677606 -141105866 + (CA)n Simple_repeat Simple_repeat 1 89 0 281 233 56 11 chr11 7677788 7677878 -141105594 - L2 LINE L2 -3 3269 3176 2138 102 6 10 chr11 7680917 7681231 -141102241 - AluSp SINE Alu 0 313 1 304 330 82 79 chr11 7681553 7682159 -141101313 - L2 LINE L2 0 3313 2694 236 312 50 64 chr11 7682519 7682660 -141100812 - L2 LINE L2 -2548 766 628 318 345 35 9 chr11 7682758 7682874 -141100598 - L2 LINE L2 -2878 436 318 394 313 22 8 chr11 7682898 7683032 -141100440 + L1ME LINE L1 5449 5584 -537 243 0 0 0 chr11 7683032 7683059 -141100413 + (CA)n Simple_repeat Simple_repeat 2 28 0 500 251 126 13 chr11 7683083 7683488 -141099984 + L1ME4a LINE L1 5191 5641 -525 2334 73 0 3 chr11 7684021 7684323 -141099149 + AluY SINE Alu 1 301 -10 1367 174 8 30 chr11 7684463 7684727 -141098745 - AluJo SINE Alu -10 302 45 605 227 128 34 chr11 7684746 7685099 -141098373 + L1ME4a LINE L1 5733 6118 -3 412 164 0 125 chr11 7685635 7685739 -141097733 + AluJo SINE Alu 87 177 -125 2151 97 3 7 chr11 7686000 7686300 -141097172 + AluSx SINE Alu 6 304 -8 1784 145 6 25 chr11 7687969 7688287 -141095185 + AluJo SINE Alu 1 312 0 575 265 160 10 chr11 7688389 7688589 -141094883 - MIR SINE MIR -27 235 6 741 164 8 15 chr11 7688781 7688915 -141094557 - FLAM_A SINE Alu 0 133 1 419 191 23 183 chr11 7690536 7690798 -141092674 + L1MC5 LINE L1 7710 7929 -32 571 250 99 16 chr11 7690843 7691035 -141092437 + L1MC4 LINE L1 7288 7495 -547 356 297 0 0 chr11 7691019 7691137 -141092335 + L1MC5 LINE L1 7311 7428 -533 * 614 99 0 141 chr11 7691180 7691301 -141092171 + AluJo SINE Alu 85 188 -124 260 130 0 0 chr11 7691363 7691409 -141092063 + MLT1G1 LTR MaLR 532 577 -18 180 375 16 16 chr11 7691557 7691685 -141091787 + L2 LINE L2 2932 3059 -213 1544 182 3 24 chr11 7691926 7692223 -141091249 + AluJb SINE Alu 1 291 -21 206 209 0 23 chr11 7692403 7692446 -141091026 + L2 LINE L2 3256 3297 -16 1930 119 7 7 chr11 7692923 7693216 -141090256 + AluSx SINE Alu 1 293 -19 2049 103 3 3 chr11 7693363 7693645 -141089827 + AluSx SINE Alu 2 283 -29 1126 279 45 45 chr11 7694159 7694711 -141088761 + L1ME LINE L1 5267 5818 -303 3174 169 59 45 chr11 7694791 7695488 -141087984 - L1MB4 LINE L1 0 6180 5474 182 61 0 30 chr11 7695574 7695607 -141087865 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 197 239 22 0 chr11 7695842 7695888 -141087584 + MIR SINE MIR 28 74 -134 551 199 252 0 chr11 7696978 7697129 -141086343 + MER5A DNA MER1_type 1 189 0 1871 118 28 0 chr11 7697863 7698152 -141085320 + AluSx SINE Alu 1 297 -15 857 223 84 44 chr11 7698428 7698679 -141084793 - MIR SINE MIR 0 262 2 306 0 0 0 chr11 7700085 7700119 -141083353 + (CA)n Simple_repeat Simple_repeat 2 35 0 183 80 0 0 chr11 7700388 7700413 -141083059 + (T)n Simple_repeat Simple_repeat 1 25 0 320 299 99 30 chr11 7702187 7702388 -141081084 - MIR SINE MIR -44 218 4 381 102 0 0 chr11 7704260 7704319 -141079153 + (TC)n Simple_repeat Simple_repeat 1 59 0 1730 147 0 18 chr11 7705221 7705500 -141077972 - AluJo SINE Alu -21 291 18 303 324 76 44 chr11 7705501 7705659 -141077813 - MIR SINE MIR -65 143 2 211 325 18 65 chr11 7705859 7706028 -141077444 - MIR SINE MIR -30 232 72 272 250 120 10 chr11 7706077 7706177 -141077295 + MIR3 SINE MIR 4 114 -94 764 183 0 0 chr11 7706424 7706560 -141076912 - FLAM_A SINE Alu 0 136 1 265 204 0 0 chr11 7707082 7707126 -141076346 - MIR SINE MIR -10 252 209 767 277 124 38 chr11 7707521 7707947 -141075525 + L2 LINE L2 2442 2904 -410 485 282 48 27 chr11 7708102 7708290 -141075182 + L2 LINE L2 3117 3308 -5 332 308 36 86 chr11 7708902 7709262 -141074210 + L2 LINE L2 2830 3171 -101 1809 108 20 17 chr11 7709942 7710239 -141073233 - AluSx SINE Alu -14 298 1 2018 97 28 0 chr11 7712497 7712787 -141070685 - AluSq SINE Alu -15 298 1 1355 103 41 0 chr11 7713453 7713648 -141069824 + AluSp SINE Alu 79 281 -32 2279 62 28 0 chr11 7713888 7714177 -141069295 - AluY SINE Alu -14 297 1 407 262 99 0 chr11 7714886 7715027 -141068445 - Charlie2a DNA MER1_type -1199 1663 1509 1869 151 87 53 chr11 7716163 7716579 -141066893 + MSTB1 LTR MaLR 1 430 -2 1485 206 133 50 chr11 7716884 7716940 -141066532 + MER20B DNA MER1_type 8 58 -725 874 129 0 50 chr11 7716940 7717080 -141066392 - FLAM_C SINE Alu 0 133 1 1485 206 133 50 chr11 7717080 7717675 -141065797 + MER20B DNA MER1_type 58 783 0 705 141 107 25 chr11 7718008 7718129 -141065343 + FLAM_C SINE Alu 2 132 -11 2060 78 14 17 chr11 7718269 7718564 -141064908 - AluSg SINE Alu -16 294 1 182 282 183 0 chr11 7719339 7719410 -141064062 + L3 LINE CR1 1436 1519 -58 258 304 59 20 chr11 7720526 7720628 -141062844 + MIR SINE MIR 35 140 -68 1964 149 9 15 chr11 7720879 7721033 -141062439 - MER2 DNA MER2_type -10 335 182 1614 177 7 7 chr11 7721033 7721349 -141062123 + AluJo SINE Alu 1 316 0 1964 149 9 15 chr11 7721349 7721529 -141061943 - MER2 DNA MER2_type -163 182 2 2020 85 66 0 chr11 7723047 7723319 -141060153 - AluSq SINE Alu -23 290 1 651 228 82 5 chr11 7723916 7724100 -141059372 - MIR SINE MIR 0 262 65 1698 131 22 47 chr11 7724100 7724420 -141059052 + AluJo SINE Alu 1 312 0 608 114 48 6 chr11 7726613 7726851 -141056621 - AluSc SINE Alu -23 286 6 3592 115 22 28 chr11 7726851 7727432 -141056040 + LTR9B LTR ERV1 67 644 0 205 301 171 5 chr11 7727513 7727712 -141055760 + L2 LINE L2 718 949 -2365 257 271 281 55 chr11 7730315 7730475 -141052997 + L2 LINE L2 1235 1357 -1957 2023 102 3 24 chr11 7730475 7730770 -141052702 - AluSx SINE Alu -23 289 1 257 271 281 55 chr11 7730770 7731085 -141052387 + L2 LINE L2 1357 1818 -1496 415 291 52 107 chr11 7731369 7731771 -141051701 + L2 LINE L2 2933 3312 -1 370 267 69 0 chr11 7733341 7733457 -141050015 - MIR SINE MIR -80 182 59 2291 84 3 3 chr11 7733597 7733896 -141049576 + AluSp SINE Alu 1 299 -14 303 263 105 0 chr11 7734616 7734711 -141048761 + MIR SINE MIR 81 185 -77 369 0 0 0 chr11 7735681 7735722 -141047750 + (CA)n Simple_repeat Simple_repeat 1 41 0 516 290 135 65 chr11 7736319 7736511 -141046961 - L2 LINE L2 0 3313 3136 2274 79 3 3 chr11 7736511 7736816 -141046656 + AluSp SINE Alu 1 305 -8 516 290 135 65 chr11 7736816 7737054 -141046418 - L2 LINE L2 -177 3136 2853 862 157 42 6 chr11 7737063 7737229 -141046243 + L1MB8 LINE L1 5984 6155 -23 2269 72 0 7 chr11 7738312 7738604 -141044868 - AluSg SINE Alu -20 290 1 2105 109 17 0 chr11 7741683 7741977 -141041495 - AluSx SINE Alu -13 299 1 363 23 0 0 chr11 7742611 7742654 -141040818 - 5S rRNA rRNA -78 43 1 227 297 77 0 chr11 7743498 7743589 -141039883 + L2 LINE L2 3210 3307 -6 752 201 81 11 chr11 7744957 7745131 -141038341 - MER20 DNA MER1_type -2 217 32 248 104 42 0 chr11 7745138 7745186 -141038286 + GA-rich Low_complexity Low_complexity 3 52 0 203 149 0 21 chr11 7745292 7745339 -141038133 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 2250 70 0 3 chr11 7749069 7749355 -141034117 + AluY SINE Alu 13 297 -14 2016 237 33 10 chr11 7749698 7750165 -141033307 + LTR40a LTR ERVL 1 478 -41 992 169 142 9 chr11 7750165 7750384 -141033088 + MLT1A1 LTR MaLR 1 248 -117 199 216 6 210 chr11 7750385 7750419 -141033053 - MIR3 SINE MIR -48 160 121 2061 82 64 3 chr11 7750419 7750701 -141032771 - AluSq SINE Alu -14 299 1 199 216 6 210 chr11 7750701 7750842 -141032630 - MIR3 SINE MIR -87 121 50 241 283 83 32 chr11 7751481 7751675 -141031797 - MIR SINE MIR -1 261 11 524 338 57 11 chr11 7752410 7752691 -141030781 + L2 LINE L2 1964 2257 -1057 423 38 0 0 chr11 7753002 7753055 -141030417 + (CA)n Simple_repeat Simple_repeat 2 54 0 1683 164 11 3 chr11 7753057 7753344 -141030128 - AluJo SINE Alu -21 291 3 28 29 0 0 chr11 7753349 7753384 -141030088 + AT_rich Low_complexity Low_complexity 1 35 0 487 319 61 67 chr11 7753630 7753943 -141029529 + L2 LINE L2 2961 3271 -1 795 120 0 0 chr11 7756631 7756739 -141026733 + FLAM_C SINE Alu 6 113 -30 1895 162 3 13 chr11 7757226 7757541 -141025931 + AluJb SINE Alu 1 312 0 1286 221 111 48 chr11 7758868 7759210 -141024262 + MLT1G3 LTR MaLR 1 320 -235 1132 163 4 40 chr11 7759210 7759437 -141024035 - AluJo SINE Alu -8 304 86 1740 145 3 29 chr11 7759212 7759522 -141023950 - AluJo SINE Alu -10 302 1 1286 221 111 48 chr11 7759522 7759693 -141023779 + MLT1G3 LTR MaLR 405 555 0 457 276 112 23 chr11 7759777 7759991 -141023481 + MLT1G1-int LTR MaLR 309 541 -830 2242 89 7 0 chr11 7760105 7760407 -141023065 + AluSp SINE Alu 1 304 -9 311 160 170 0 chr11 7760416 7760439 -141023033 + L1MA10 LINE L1 6218 6236 -98 207 69 0 0 chr11 7760439 7760468 -141023004 + (TG)n Simple_repeat Simple_repeat 1 29 0 311 160 170 0 chr11 7760468 7760544 -141022928 + L1MA10 LINE L1 6236 6334 0 2155 116 0 0 chr11 7760589 7760882 -141022590 + AluSx SINE Alu 1 293 -19 1658 150 37 20 chr11 7761075 7761369 -141022103 - AluJb SINE Alu -13 299 1 2366 76 0 0 chr11 7761453 7761754 -141021718 - AluSp SINE Alu -12 301 1 333 229 21 100 chr11 7762034 7762174 -141021298 + MLT1G1-int LTR MaLR 1055 1183 -188 1514 176 20 14 chr11 7762245 7762540 -141020932 - AluJb SINE Alu -15 297 1 923 118 0 0 chr11 7762540 7762675 -141020797 - AluJb SINE Alu -177 135 1 306 271 71 43 chr11 7762677 7762817 -141020655 + MLT1G1-int LTR MaLR 1221 1364 -7 2246 243 78 5 chr11 7762817 7763369 -141020103 + MLT1G1 LTR MaLR 4 595 0 311 258 22 22 chr11 7763681 7763770 -141019702 + MIR3 SINE MIR 106 194 -14 196 317 49 12 chr11 7764004 7764086 -141019386 - L2 LINE L2 -458 2856 2772 444 254 35 4 chr11 7764197 7764326 -141019146 + MIR3 SINE MIR 65 197 -11 368 212 121 0 chr11 7764452 7764551 -141018921 - L2 LINE L2 -10 3303 3193 265 250 0 48 chr11 7765931 7766015 -141017457 + GA-rich Low_complexity Low_complexity 3 82 0 574 249 93 72 chr11 7767290 7767527 -141015945 - MIR SINE MIR -10 252 11 3419 76 0 18 chr11 7768255 7768713 -141014759 + pTR5 LTR ERV1 1572 2021 -417 381 192 52 26 chr11 7768714 7768826 -141014646 + LTR30 LTR ERV1 375 642 -80 1649 97 9 4 chr11 7768826 7769064 -141014408 + pTR5 LTR ERV1 136 396 -2042 327 188 42 21 chr11 7769113 7769209 -141014263 + MER113 DNA MER1_type? 2 99 -422 705 193 64 138 chr11 7769273 7769490 -141013982 - L2 LINE L2 -4 3309 3122 2193 102 3 0 chr11 7769490 7769793 -141013679 + AluSx SINE Alu 1 304 -8 705 193 64 138 chr11 7769793 7769901 -141013571 - L2 LINE L2 -191 3122 3008 4984 172 35 16 chr11 7770120 7770274 -141013198 + L1MB7 LINE L1 4176 4326 -1858 1959 154 0 0 chr11 7770274 7770572 -141012900 + AluSx SINE Alu 1 298 -14 4984 172 35 16 chr11 7770572 7771349 -141012123 + L1MB7 LINE L1 4326 5087 -1097 306 0 0 0 chr11 7771349 7771383 -141012089 + (CA)n Simple_repeat Simple_repeat 1 34 0 4984 172 35 16 chr11 7771383 7772107 -141011365 + L1MB7 LINE L1 5087 6157 -27 1231 195 39 12 chr11 7772107 7772361 -141011111 + L1MB7 LINE L1 5912 6175 -9 4984 172 35 16 chr11 7772361 7772381 -141011091 + L1MB7 LINE L1 6157 6175 -9 966 126 0 0 chr11 7772964 7773107 -141010365 - AluJb SINE Alu -169 143 1 204 40 0 0 chr11 7773144 7773169 -141010303 + (ATG)n Simple_repeat Simple_repeat 2 26 0 201 158 0 53 chr11 7773228 7773266 -141010206 + L2 LINE L2 3200 3235 -37 219 298 81 24 chr11 7774440 7774564 -141008908 + MIR SINE MIR 44 174 -88 367 154 231 0 chr11 7774684 7774788 -141008684 - L2 LINE L2 -6 3266 3139 682 223 37 53 chr11 7774948 7775136 -141008336 - MIR SINE MIR -45 217 33 2279 99 3 3 chr11 7825211 7825503 -140957969 - AluSg SINE Alu -18 292 1 2441 79 0 7 chr11 7825503 7825808 -140957664 - AluSp SINE Alu -10 303 1 1549 117 44 0 chr11 7825816 7826065 -140957407 - L1MA5A LINE L1 -5 6292 6033 372 154 0 10 chr11 7826461 7826536 -140956936 - L1M4 LINE L1 -2303 3843 3772 1735 186 0 7 chr11 7828813 7829119 -140954353 - AluJo SINE Alu -8 304 1 348 213 0 0 chr11 7829768 7829829 -140953643 - AluJ/FLAM SINE Alu -222 80 20 1846 170 0 16 chr11 7830247 7830559 -140952913 + AluJb SINE Alu 1 307 -5 35 54 0 0 chr11 7830634 7830690 -140952782 + AT_rich Low_complexity Low_complexity 1 56 0 4232 134 42 8 chr11 7830702 7830828 -140952644 - L1PB3 LINE L1 -10 6144 6024 186 43 0 0 chr11 7830828 7830851 -140952621 + (TCCC)n Simple_repeat Simple_repeat 1 23 0 4232 134 42 8 chr11 7830851 7831435 -140952037 - L1PB3 LINE L1 -130 6024 5410 2112 139 0 3 chr11 7831871 7832172 -140951300 + AluSx SINE Alu 1 300 -12 664 221 62 87 chr11 7832190 7832512 -140950960 + HAL1 LINE L1 46 359 -2148 198 103 0 0 chr11 7832542 7832571 -140950901 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 1604 119 0 0 chr11 7832670 7832889 -140950583 - AluJb SINE Alu -19 293 75 1187 188 0 0 chr11 7832991 7833198 -140950274 - MER47A DNA MER2_type -159 207 1 739 178 0 8 chr11 7833823 7833952 -140949520 + FLAM_C SINE Alu 1 128 -5 21 0 0 0 chr11 7833964 7833985 -140949487 + AT_rich Low_complexity Low_complexity 1 21 0 1787 185 8 3 chr11 7833985 7834337 -140949135 - L1MB3 LINE L1 -16 6167 5814 7279 52 2 1 chr11 7834345 7835237 -140948235 - L1PA5 LINE L1 -8 6146 5254 2411 66 0 3 chr11 7835886 7836175 -140947297 - AluY SINE Alu -23 288 1 1860 164 7 3 chr11 7836710 7837009 -140946463 - AluJo SINE Alu -12 300 1 1549 198 128 6 chr11 7838024 7838382 -140945090 + L1ME1 LINE L1 5425 5826 -340 1897 130 4 7 chr11 7839838 7840115 -140943357 - AluSx SINE Alu -26 286 11 350 203 25 0 chr11 7840462 7840541 -140942931 - L1MEc LINE L1 -3751 2464 2384 649 178 0 0 chr11 7840553 7840660 -140942812 - MLT1D LTR MaLR -44 461 355 636 234 77 28 chr11 7840660 7840866 -140942606 - L1MEc LINE L1 -3816 2399 2219 2008 94 0 0 chr11 7840866 7841110 -140942362 - AluSc SINE Alu -65 244 1 636 234 77 28 chr11 7841110 7841151 -140942321 - L1MEc LINE L1 -3996 2219 2181 1423 126 9 23 chr11 7841166 7841381 -140942091 + AluSg/x SINE Alu 85 296 -16 1292 246 94 24 chr11 7841390 7841605 -140941867 + L1 LINE L1 3224 3422 -2724 1568 145 0 38 chr11 7841605 7841867 -140941605 + AluJb SINE Alu 56 307 -5 1292 246 94 24 chr11 7841867 7842160 -140941312 + L1 LINE L1 3422 3768 -2378 301 306 35 0 chr11 7842163 7842248 -140941224 + L1 LINE L1 3821 3908 -2238 23 0 0 0 chr11 7843251 7843274 -140940198 + AT_rich Low_complexity Low_complexity 1 23 0 2626 36 3 3 chr11 7843274 7843578 -140939894 + AluSp SINE Alu 1 304 -9 327 226 165 9 chr11 7844059 7844174 -140939298 - L2 LINE L2 -4 3309 3177 192 97 0 0 chr11 7844218 7844249 -140939223 + (T)n Simple_repeat Simple_repeat 1 31 0 9597 39 2 2 chr11 7844349 7845497 -140937975 + L1P LINE L1 3413 4560 -1586 557 258 36 6 chr11 7845663 7845830 -140937642 - MIR3 SINE MIR -21 187 16 228 297 109 32 chr11 7845883 7846202 -140937270 - L2 LINE L2 -325 2947 2606 1975 157 10 0 chr11 7846491 7846796 -140936676 + AluJo SINE Alu 1 308 -4 233 273 0 78 chr11 7847278 7847355 -140936117 - L2 LINE L2 -2 3311 3241 1702 194 0 7 chr11 7848455 7848764 -140934708 - AluJb SINE Alu -5 307 1 1217 47 0 0 chr11 7850149 7850298 -140933174 - AluY SINE Alu 0 311 163 1627 95 5 0 chr11 7850398 7850609 -140932863 - AluY SINE Alu -99 212 1 2217 91 20 7 chr11 7851821 7852117 -140931355 - AluSc SINE Alu -9 300 1 1198 229 138 52 chr11 7852208 7852365 -140931107 - MER113 DNA MER1_type? -41 480 338 1826 168 3 7 chr11 7852365 7852674 -140930798 - AluJb SINE Alu -4 308 1 1198 229 138 52 chr11 7852674 7852810 -140930662 - MER113 DNA MER1_type? -183 338 215 2327 88 0 7 chr11 7852810 7853107 -140930365 - AluSg SINE Alu -15 295 1 1198 229 138 52 chr11 7853107 7853254 -140930218 - MER113 DNA MER1_type? -306 215 1 32 26 0 0 chr11 7853525 7853564 -140929908 + AT_rich Low_complexity Low_complexity 1 39 0 1543 178 4 26 chr11 7853710 7853979 -140929493 + AluJo SINE Alu 30 292 -20 1678 158 12 59 chr11 7854760 7855082 -140928390 - AluJo SINE Alu -5 307 1 1145 142 0 0 chr11 7855369 7855531 -140927941 + FRAM SINE Alu 2 163 -13 2266 80 0 27 chr11 7856211 7856510 -140926962 - AluY SINE Alu -20 291 1 25 0 0 0 chr11 7856527 7856552 -140926920 + AT_rich Low_complexity Low_complexity 1 25 0 931 146 14 0 chr11 7857942 7858086 -140925386 + FAM SINE Alu 27 172 -13 352 161 0 0 chr11 7858089 7858145 -140925327 + FLAM_A SINE Alu 75 130 -3 2329 70 0 0 chr11 7859338 7859622 -140923850 - AluY SINE Alu -27 284 1 1623 180 3 18 chr11 7859731 7860015 -140923457 - AluJo SINE Alu -22 290 11 379 328 0 0 chr11 7860884 7861000 -140922472 - L2 LINE L2 0 3313 3198 2278 94 7 3 chr11 7862151 7862458 -140921014 - AluSx SINE Alu -4 308 1 2220 126 0 13 chr11 7864297 7864606 -140918866 - AluJb SINE Alu -7 305 1 267 250 94 113 chr11 7865237 7865397 -140918075 + MIR SINE MIR 32 188 -74 1286 114 95 5 chr11 7865611 7865822 -140917650 - MER30 DNA MER1_type 0 230 1 2182 96 24 0 chr11 7866106 7866399 -140917073 + AluSx SINE Alu 3 302 -10 21 0 0 0 chr11 7866399 7866420 -140917052 + AT_rich Low_complexity Low_complexity 1 21 0 263 71 24 0 chr11 7867206 7867248 -140916224 + (TG)n Simple_repeat Simple_repeat 1 43 0 23 0 0 0 chr11 7867441 7867464 -140916008 + GC_rich Low_complexity Low_complexity 1 23 0 2858 237 65 38 chr11 7867946 7869081 -140914391 - L1M4c LINE L1 -4471 2667 1363 821 239 114 0 chr11 7869081 7869282 -140914190 - MER58A DNA MER1_type 0 224 1 2858 237 65 38 chr11 7869282 7869444 -140914028 - L1M4c LINE L1 -5775 1363 1207 264 59 0 0 chr11 7869467 7869501 -140913971 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 595 223 0 0 chr11 7869505 7869617 -140913855 - FLAM_A SINE Alu -18 115 4 391 268 24 16 chr11 7869669 7869792 -140913680 - L1M4c LINE L1 -5667 1188 1065 1211 250 54 11 chr11 7869804 7870084 -140913388 + AluJo SINE Alu 13 304 -8 339 357 75 12 chr11 7870087 7870339 -140913133 - L1M4c LINE L1 -5792 1063 796 255 254 29 133 chr11 7870458 7870599 -140912873 - L1M4c LINE L1 -6613 246 125 1994 103 3 64 chr11 7870599 7870911 -140912561 - AluSx SINE Alu -19 293 1 255 254 29 133 chr11 7870911 7870942 -140912530 - L1M4c LINE L1 -6734 125 92 1634 114 8 0 chr11 7870954 7871190 -140912282 - Tigger5 DNA MER2_type 0 2323 2086 245 177 48 0 chr11 7871451 7871513 -140911959 + CT-rich Low_complexity Low_complexity 1 65 0 1483 206 3 55 chr11 7871513 7871715 -140911757 - AluJb SINE Alu -1 311 131 1709 150 4 0 chr11 7871715 7871968 -140911504 + AluSx SINE Alu 41 294 -18 1483 206 3 55 chr11 7871968 7872091 -140911381 - AluJb SINE Alu -181 131 3 2117 131 0 0 chr11 7872185 7872496 -140910976 + AluSx SINE Alu 1 311 0 1906 157 0 20 chr11 7872520 7872825 -140910647 + AluJo SINE Alu 1 299 -13 335 219 116 43 chr11 7872852 7873016 -140910456 - L1ME4a LINE L1 -73 6048 5873 1379 222 75 28 chr11 7873085 7873281 -140910191 - MLT1A1 LTR MaLR -1 364 146 2386 84 3 7 chr11 7873281 7873591 -140909881 - AluSq SINE Alu -4 309 1 1379 222 75 28 chr11 7873591 7873714 -140909758 - MLT1A1 LTR MaLR -219 146 30 678 266 53 7 chr11 7873965 7874176 -140909296 - L1ME3 LINE L1 -1 6161 5935 659 168 50 17 chr11 7874199 7874318 -140909154 - FLAM_C SINE Alu -19 124 2 330 181 234 0 chr11 7874746 7874840 -140908632 - L1ME4a LINE L1 -12 6109 5994 816 219 96 86 chr11 7874916 7875322 -140908150 - L1ME3 LINE L1 -357 5764 5355 340 83 42 14 chr11 7875343 7875415 -140908057 - L1MA7 LINE L1 0 6291 6218 1232 216 29 19 chr11 7875519 7875834 -140907638 + L1MB7 LINE L1 5852 6169 -15 2358 86 20 0 chr11 7875839 7876140 -140907332 - AluY SINE Alu -4 307 1 26 64 0 0 chr11 7877126 7877173 -140906299 + AT_rich Low_complexity Low_complexity 1 47 0 1765 161 0 21 chr11 7877344 7877635 -140905837 - AluJo SINE Alu -19 293 9 242 298 133 40 chr11 7877698 7877849 -140905623 - L2 LINE L2 -9 3263 3099 470 211 28 18 chr11 7878064 7878173 -140905299 - MIR SINE MIR 0 262 153 309 263 21 0 chr11 7878528 7878623 -140904849 - MIR SINE MIR 0 262 166 184 342 50 33 chr11 7878621 7878741 -140904731 - L2 LINE L2 0 3272 3151 * 280 235 20 29 chr11 7878743 7878845 -140904627 - MIR SINE MIR -97 165 65 694 144 5 40 chr11 7878845 7879047 -140904425 + AluJ SINE Alu 87 312 0 377 121 0 15 chr11 7879049 7879115 -140904357 + (GGAGAA)n Simple_repeat Simple_repeat 3 67 0 1091 148 19 19 chr11 7880047 7880256 -140903216 - AluSg/x SINE Alu -20 292 84 432 0 0 0 chr11 7880355 7880403 -140903069 + (TG)n Simple_repeat Simple_repeat 2 49 0 453 71 14 71 chr11 7880685 7880755 -140902717 + Charlie3 DNA MER1_type 2631 2696 -14 2360 100 0 3 chr11 7880855 7881155 -140902317 - AluSg SINE Alu -11 299 1 300 197 61 0 chr11 7882897 7882963 -140900509 + FAM SINE Alu 89 158 -17 1544 137 9 4 chr11 7883019 7883246 -140900226 - AluJo SINE Alu 0 312 85 2063 111 13 46 chr11 7883309 7883479 -140899993 - AluSx SINE Alu -15 297 140 2308 94 10 0 chr11 7883479 7883787 -140899685 - AluY SINE Alu 0 311 1 2063 111 13 46 chr11 7883787 7883923 -140899549 - AluSx SINE Alu -172 140 1 273 289 164 19 chr11 7884652 7884756 -140898716 - MIR SINE MIR -119 143 25 2388 94 3 0 chr11 7886701 7887008 -140896464 - AluSg SINE Alu -2 308 1 2068 132 0 3 chr11 7887010 7887305 -140896167 - AluJb SINE Alu -18 294 1 2264 108 0 0 chr11 7887640 7887935 -140895537 - AluSg SINE Alu -15 295 1 266 248 28 50 chr11 7889016 7889157 -140894315 + L1M4 LINE L1 4989 5126 -1020 1005 198 86 5 chr11 7890722 7890919 -140892553 - AluJo SINE Alu -99 213 1 384 263 68 8 chr11 7891182 7891315 -140892157 + MIR SINE MIR 51 191 -71 1649 220 6 9 chr11 7891323 7891668 -140891804 - MER2 DNA MER2_type 0 344 1 393 22 0 0 chr11 7891985 7892031 -140891441 + (CA)n Simple_repeat Simple_repeat 2 47 0 324 228 331 7 chr11 7893317 7893462 -140890010 - MIR3 SINE MIR -2 206 15 322 165 141 47 chr11 7894045 7894130 -140889342 - HY4 scRNA scRNA 0 93 1 21 0 0 0 chr11 7894185 7894206 -140889266 + AT_rich Low_complexity Low_complexity 1 21 0 1158 164 200 0 chr11 7894227 7894452 -140889020 - AluJb SINE Alu -22 290 21 2128 115 14 0 chr11 7894474 7894761 -140888711 - AluSx SINE Alu -21 291 1 5913 140 56 15 chr11 7894764 7895182 -140888290 - L1MC1 LINE L1 -11 6322 5922 2538 66 0 22 chr11 7895182 7895500 -140887972 - AluY SINE Alu 0 311 1 5913 140 56 15 chr11 7895500 7896126 -140887346 - L1MC1 LINE L1 -411 5922 5237 663 191 35 0 chr11 7896140 7896281 -140887191 - L1MC1 LINE L1 -1083 5063 4918 26575 67 1 1 chr11 7896381 7899755 -140883717 - L1P LINE L1 -2763 3383 11 3317 162 19 14 chr11 7899764 7900643 -140882829 - L1MB2 LINE L1 -346 6061 5180 2186 138 59 0 chr11 7900644 7901000 -140882472 - L1MB2 LINE L1 -5972 412 36 961 163 35 23 chr11 7901642 7901814 -140881658 + FRAM SINE Alu 3 176 0 185 189 0 0 chr11 7901911 7901948 -140881524 + MIR SINE MIR 220 256 -6 32 0 0 0 chr11 7903103 7903135 -140880337 + AT_rich Low_complexity Low_complexity 1 32 0 1821 180 0 0 chr11 7903141 7903425 -140880047 - AluJo SINE Alu -28 284 1 220 239 0 0 chr11 7903798 7903844 -140879628 - L2 LINE L2 -215 3057 3012 333 307 122 22 chr11 7903934 7904204 -140879268 - L2 LINE L2 -970 2344 2048 1082 213 110 46 chr11 7904235 7904286 -140879186 + HAL1 LINE L1 1012 1058 -1449 2036 119 6 29 chr11 7904286 7904597 -140878875 + AluSx SINE Alu 1 304 -8 1082 213 110 46 chr11 7904597 7904962 -140878510 + HAL1 LINE L1 1058 1455 -1052 1917 127 26 39 chr11 7905731 7906038 -140877434 - AluJb SINE Alu -9 303 1 2270 84 3 39 chr11 7906624 7906933 -140876539 - AluSp SINE Alu -15 298 1 534 219 8 0 chr11 7907365 7907488 -140875984 + HAL1 LINE L1 1658 1781 -726 394 243 72 0 chr11 7907777 7907888 -140875584 - FRAM SINE Alu -1 165 47 387 0 0 0 chr11 7908112 7908155 -140875317 + (CA)n Simple_repeat Simple_repeat 2 44 0 207 250 13 66 chr11 7908744 7908820 -140874652 - MER5B DNA MER1_type -78 100 29 689 229 78 69 chr11 7909063 7909385 -140874087 - MLT1I LTR MaLR 0 409 74 3027 153 86 29 chr11 7909438 7909820 -140873652 - L1MB5 LINE L1 0 6174 5742 2199 103 31 0 chr11 7909820 7910110 -140873362 + AluSx SINE Alu 1 299 -13 3027 153 86 29 chr11 7910110 7910341 -140873131 - L1MB5 LINE L1 -432 5742 5526 771 89 0 0 chr11 7910982 7911083 -140872389 + HY3 scRNA scRNA 1 101 0 2280 50 0 7 chr11 7911096 7911416 -140872056 + AluY SINE Alu 1 318 0 276 216 103 69 chr11 7911655 7911771 -140871701 + L2 LINE L2 2119 2238 -1076 * 644 292 65 0 chr11 7911737 7911922 -140871550 - MIR SINE MIR -7 255 59 228 283 62 53 chr11 7911927 7912040 -140871432 + L2 LINE L2 2579 2692 -622 712 282 183 6 chr11 7912163 7912496 -140870976 + L2 LINE L2 2920 3311 -2 1794 153 7 3 chr11 7914642 7914942 -140868530 - AluJb SINE Alu -11 301 1 2587 43 0 0 chr11 7916213 7916516 -140866956 + AluY SINE Alu 1 303 -8 2314 73 3 0 chr11 7916530 7916831 -140866641 + AluSp SINE Alu 1 302 -11 206 320 13 26 chr11 7917026 7917104 -140866368 + MIR SINE MIR 31 107 -155 2276 90 0 0 chr11 7917118 7917418 -140866054 + AluSq SINE Alu 1 300 -13 327 272 184 8 chr11 7919977 7920102 -140863370 - MIR3 SINE MIR -32 176 30 2463 62 3 0 chr11 7921524 7921831 -140861641 - AluY SINE Alu -3 308 1 379 297 189 0 chr11 7922573 7922721 -140860751 + MIR SINE MIR 68 243 -19 1847 131 25 32 chr11 7922798 7923112 -140860360 + AluJo SINE Alu 1 312 0 197 175 0 25 chr11 7923377 7923417 -140860055 - MIR SINE MIR -137 125 87 426 20 0 0 chr11 7923451 7923502 -140859970 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 5621 66 44 44 chr11 7923502 7924558 -140858914 - SVA Other Other -551 1367 433 1863 145 7 0 chr11 7924717 7925013 -140858459 - AluJb SINE Alu -14 298 1 33 0 0 0 chr11 7926595 7926628 -140856844 + AT_rich Low_complexity Low_complexity 1 33 0 2212 99 0 3 chr11 7927502 7927806 -140855666 - AluSc SINE Alu -6 303 1 29 28 0 0 chr11 7928200 7928236 -140855236 + AT_rich Low_complexity Low_complexity 1 36 0 716 177 0 31 chr11 7928257 7928387 -140855085 - AluJo SINE Alu -176 136 11 376 270 54 0 chr11 7930130 7930241 -140853231 - MIR3 SINE MIR -33 175 59 471 127 56 7 chr11 7930757 7930899 -140852573 + (CA)n Simple_repeat Simple_repeat 1 149 0 2174 79 31 0 chr11 7931970 7932262 -140851210 - AluSx SINE Alu -11 301 1 233 353 49 11 chr11 7932670 7932854 -140850618 + L2 LINE L2 2864 3054 -218 305 175 193 9 chr11 7932952 7933066 -140850406 - Charlie2 DNA MER1_type -32 2830 2696 1702 170 7 0 chr11 7933072 7933360 -140850112 + AluJb SINE Alu 1 290 -22 1251 193 161 85 chr11 7933378 7933675 -140849797 - Charlie2 DNA MER1_type -145 2717 2444 1748 170 0 22 chr11 7933675 7933992 -140849480 - AluJo SINE Alu 0 312 3 1251 193 161 85 chr11 7933992 7934496 -140848976 - Charlie2 DNA MER1_type -418 2444 1855 673 269 97 4 chr11 7934486 7934713 -140848759 - Charlie2 DNA MER1_type -2452 330 83 * 260 234 16 0 chr11 7934811 7934875 -140848597 + L1MC/D LINE L1 5712 5776 -2032 21 36 0 0 chr11 7937322 7937350 -140846122 + AT_rich Low_complexity Low_complexity 1 28 0 313 194 90 52 chr11 7937444 7937599 -140845873 + L1MC5 LINE L1 7603 7763 -198 187 345 18 0 chr11 7937769 7937824 -140845648 - MIR SINE MIR -6 256 201 847 191 39 17 chr11 7937890 7938068 -140845404 - Charlie4 DNA MER1_type -1763 198 17 282 282 26 0 chr11 7938080 7938158 -140845314 - L2 LINE L2 -7 3306 3227 2104 113 7 0 chr11 7938163 7938465 -140845007 + AluSx SINE Alu 1 304 -8 2094 126 3 0 chr11 7938493 7938795 -140844677 + AluSx SINE Alu 1 303 -9 1827 146 0 0 chr11 7938804 7939084 -140844388 + AluJb SINE Alu 1 280 -32 2446 109 73 5 chr11 7939267 7939662 -140843810 + L1M2 LINE L1 5254 5675 -616 310 146 0 0 chr11 7939763 7939811 -140843661 + FRAM SINE Alu 72 119 -47 2084 132 3 0 chr11 7940530 7940841 -140842631 - AluSx SINE Alu 0 312 1 2306 66 0 10 chr11 7941081 7941384 -140842088 - AluSx SINE Alu -12 300 1 309 348 49 54 chr11 7943396 7943580 -140839892 - L2 LINE L2 -8 3264 3082 310 221 47 35 chr11 7945711 7945797 -140837675 + MIR3 SINE MIR 70 156 -52 2073 52 0 94 chr11 7945845 7946173 -140837299 - AluY SINE Alu -14 297 1 896 130 139 9 chr11 7946726 7946949 -140836523 + MER33 DNA MER1_type 25 276 -48 188 288 34 0 chr11 7947117 7947176 -140836296 + L3 LINE CR1 955 1015 -562 233 189 19 57 chr11 7947359 7947412 -140836060 + L2 LINE L2 3185 3235 -78 1954 94 0 0 chr11 7948540 7948795 -140834677 + AluSq SINE Alu 1 255 -58 2185 93 3 10 chr11 7948795 7949107 -140834365 + AluSq SINE Alu 3 312 -1 695 256 94 33 chr11 7949169 7949529 -140833943 - HAL1 LINE L1 0 2507 2126 561 256 67 50 chr11 7949562 7949800 -140833672 - HAL1 LINE L1 -443 2064 1823 281 215 156 15 chr11 7949791 7949926 -140833546 - HAL1 LINE L1 -1303 1204 1051 * 30 27 0 0 chr11 7949935 7949972 -140833500 + AT_rich Low_complexity Low_complexity 1 37 0 1969 149 88 24 chr11 7949974 7950383 -140833089 - L1MA7 LINE L1 -1 6290 5856 542 236 177 23 chr11 7950410 7950630 -140832842 - HAL1 LINE L1 -1469 1038 785 1882 94 67 0 chr11 7950642 7950909 -140832563 + AluSx SINE Alu 11 295 -17 433 220 84 96 chr11 7950953 7951203 -140832269 - MER112 DNA MER1_type -6 254 8 2068 89 61 3 chr11 7951281 7951574 -140831898 + AluSg SINE Alu 1 310 0 458 214 262 19 chr11 7951644 7951953 -140831519 - L2 LINE L2 0 3313 1304 718 228 72 2 chr11 7951960 7952233 -140831239 + MER58B DNA MER1_type 8 341 0 1673 256 188 11 chr11 7952233 7952851 -140830621 - L2 LINE L2 -2003 1311 585 323 300 67 25 chr11 7953269 7953389 -140830083 + L2 LINE L2 3137 3261 -11 1788 153 8 67 chr11 7953598 7953957 -140829515 + LTR64 LTR ERVK 1 338 -220 2229 88 3 0 chr11 7954133 7954438 -140829034 - AluY SINE Alu -5 306 1 502 286 134 52 chr11 7954545 7954698 -140828774 - MLT1K LTR MaLR -3 585 446 571 207 83 0 chr11 7954698 7954819 -140828653 + FLAM_A SINE Alu 1 131 -2 502 286 134 52 chr11 7954819 7955112 -140828360 - MLT1K LTR MaLR -142 446 102 1933 119 6 41 chr11 7956936 7957076 -140826396 + AluSx SINE Alu 1 144 -168 2092 98 0 14 chr11 7957076 7957372 -140826100 + AluSg1 SINE Alu 1 292 -17 1933 119 6 41 chr11 7957372 7957551 -140825921 + AluSx SINE Alu 144 309 -3 730 142 7 71 chr11 7957875 7958016 -140825456 + MER52A LTR ERV1 554 685 -1070 2320 80 3 0 chr11 7958314 7958616 -140824856 - AluSc SINE Alu -6 303 1 1807 152 3 3 chr11 7958626 7958915 -140824557 - AluSx SINE Alu -12 300 12 2283 177 66 2 chr11 7959543 7959962 -140823510 - MLT1C LTR MaLR 0 467 22 1459 151 84 0 chr11 7959962 7960200 -140823272 + AluJo SINE Alu 1 258 -54 2035 145 7 0 chr11 7960555 7960852 -140822620 + AluSq SINE Alu 1 299 -14 971 102 58 0 chr11 7962450 7962587 -140820885 + AluJb SINE Alu 168 312 0 29 0 0 0 chr11 8012884 8012913 -140770559 + GC_rich Low_complexity Low_complexity 1 29 0 26 114 0 0 chr11 8013330 8013461 -140770011 + GC_rich Low_complexity Low_complexity 1 131 0 317 271 55 64 chr11 8014544 8014762 -140768710 + L1 LINE L1 3130 3345 -2801 241 106 0 85 chr11 8014821 8014868 -140768604 + tRNA-Ile-ATT tRNA tRNA 7 49 -28 2367 87 0 0 chr11 8014921 8015230 -140768242 - AluSg SINE Alu -1 309 1 348 227 10 41 chr11 8015390 8015487 -140767985 - MIR SINE MIR -102 160 67 226 383 12 0 chr11 8015577 8015658 -140767814 - L2 LINE L2 -87 3185 3104 586 283 69 43 chr11 8015752 8015985 -140767487 - L2 LINE L2 0 3313 3075 336 288 45 20 chr11 8016003 8016201 -140767271 - AluSp SINE Alu 0 303 101 23 0 0 0 chr11 8016286 8016309 -140767163 + GC_rich Low_complexity Low_complexity 1 23 0 1209 101 43 14 chr11 8016690 8016897 -140766575 - AluSp SINE Alu -100 213 1 427 189 42 32 chr11 8017301 8017396 -140766076 + MER21B LTR ERV1 1 96 -767 2193 101 0 0 chr11 8017478 8017774 -140765698 - AluSx SINE Alu -16 296 1 21 0 0 0 chr11 8018118 8018139 -140765333 + AT_rich Low_complexity Low_complexity 1 21 0 423 98 114 167 chr11 8018239 8018282 -140765190 - MER4D LTR ERV1 -639 264 220 1637 150 24 3 chr11 8018282 8018576 -140764896 - AluJb SINE Alu -12 300 1 423 98 114 167 chr11 8018576 8018664 -140764808 - MER4D LTR ERV1 -683 220 140 264 229 0 0 chr11 8018644 8018692 -140764780 + MER4D LTR ERV1 97 144 -759 * 1190 178 4 17 chr11 8018702 8018933 -140764539 + AluJb SINE Alu 41 268 -44 658 176 61 8 chr11 8018934 8019065 -140764407 - MER49 LTR ERV1 -785 138 1 2166 60 35 3 chr11 8019249 8019532 -140763940 + AluY SINE Alu 1 292 -19 1905 123 0 7 chr11 8019636 8019921 -140763551 - AluSx SINE Alu -15 297 15 822 189 6 0 chr11 8019927 8020086 -140763386 + AluJb SINE Alu 146 305 -7 2282 96 3 0 chr11 8020088 8020400 -140763072 + AluSp SINE Alu 1 313 0 576 197 118 8 chr11 8020409 8020536 -140762936 - MLT1A1 LTR MaLR -224 141 1 2422 169 11 20 chr11 8020619 8020857 -140762615 - Tigger2a DNA MER2_type -2274 434 200 2123 109 0 0 chr11 8020857 8021151 -140762321 - AluSg SINE Alu -16 294 1 2422 169 11 20 chr11 8021151 8021350 -140762122 - Tigger2a DNA MER2_type -2508 200 1 1988 108 3 3 chr11 8021512 8021800 -140761672 - AluSx SINE Alu -12 300 13 3620 181 33 41 chr11 8021904 8022206 -140761266 + LTR39 LTR ERV1 1 304 -479 2080 110 0 7 chr11 8022206 8022507 -140760965 + AluSc SINE Alu 1 299 -10 3620 181 33 41 chr11 8022507 8022824 -140760648 + LTR39 LTR ERV1 304 615 -168 2452 40 3 3 chr11 8022824 8023123 -140760349 + AluY SINE Alu 1 299 -12 3620 181 33 41 chr11 8023123 8023291 -140760181 + LTR39 LTR ERV1 615 783 0 531 221 82 0 chr11 8023441 8023563 -140759909 - MER4D LTR ERV1 -8 895 764 1438 143 44 8 chr11 8023576 8023827 -140759645 - MER4D LTR ERV1 -385 518 259 2184 103 0 0 chr11 8023974 8024274 -140759198 - AluSx SINE Alu -10 302 3 2488 131 144 51 chr11 8024299 8024528 -140758944 + MLT2B1 LTR ERVL 4 210 -310 2228 104 13 0 chr11 8024528 8024836 -140758636 - AluSx SINE Alu 0 312 1 2488 131 144 51 chr11 8024836 8025079 -140758393 + MLT2B1 LTR ERVL 210 520 0 357 344 114 30 chr11 8025079 8025209 -140758263 - L1MC4a LINE L1 -1649 6159 6041 2007 100 48 0 chr11 8025209 8025499 -140757973 - AluSg SINE Alu -3 307 4 357 344 114 30 chr11 8025499 8025630 -140757842 - L1MC4a LINE L1 -1767 6041 5876 370 240 10 10 chr11 8025635 8025735 -140757737 - L1MC4a LINE L1 -1984 5824 5725 216 0 0 0 chr11 8025735 8025759 -140757713 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2015 81 26 0 chr11 8025766 8026038 -140757434 - AluSg SINE Alu -31 279 1 219 178 20 69 chr11 8026660 8026761 -140756711 + (CCCCG)n Simple_repeat Simple_repeat 2 97 0 396 297 73 50 chr11 8027053 8027356 -140756116 - L3 LINE CR1 -458 1119 810 1760 149 7 10 chr11 8027524 8027813 -140755659 + AluSx SINE Alu 1 288 -24 1640 171 18 0 chr11 8027848 8028129 -140755343 + AluJo SINE Alu 1 286 -26 351 65 0 0 chr11 8028129 8028175 -140755297 + (CAT)n Simple_repeat Simple_repeat 2 47 0 207 0 0 0 chr11 8028543 8028566 -140754906 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2025 109 3 0 chr11 8028932 8029257 -140754215 + AluSp SINE Alu 1 326 0 743 150 39 8 chr11 8029722 8029849 -140753623 + FLAM_C SINE Alu 1 131 -2 2040 91 10 29 chr11 8029870 8030178 -140753294 + AluSg SINE Alu 1 302 -8 538 248 26 0 chr11 8030180 8030293 -140753179 + MER21B LTR ERV1 18 133 -730 2402 201 34 45 chr11 8030331 8030512 -140752960 + MER21B LTR ERV1 136 317 -546 1717 109 113 8 chr11 8030512 8030778 -140752694 + AluSg SINE Alu 1 294 -16 2402 201 34 45 chr11 8030778 8031256 -140752216 + MER21B LTR ERV1 317 755 -108 255 150 25 0 chr11 8031258 8031298 -140752174 - Alu SINE Alu -267 41 1 874 182 96 0 chr11 8031385 8031572 -140751900 + MER39 LTR ERV1 1 205 -502 2080 265 77 34 chr11 8032442 8032790 -140750682 + L1MC4a LINE L1 5255 5587 -2221 2257 88 3 0 chr11 8032790 8033084 -140750388 + AluSx SINE Alu 1 295 -17 2080 265 77 34 chr11 8033084 8033559 -140749913 + L1MC4a LINE L1 5587 6113 -1695 216 67 0 0 chr11 8033591 8033621 -140749851 + (GGA)n Simple_repeat Simple_repeat 2 31 0 351 0 0 0 chr11 8033943 8033982 -140749490 + (CA)n Simple_repeat Simple_repeat 1 39 0 2104 107 0 0 chr11 8034038 8034329 -140749143 + AluSg SINE Alu 1 291 -19 203 122 0 49 chr11 8034540 8034581 -140748891 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 2193 109 64 19 chr11 8034588 8034947 -140748525 + THE1C LTR MaLR 1 375 0 271 146 0 0 chr11 8035077 8035125 -140748347 + L1ME4a LINE L1 6073 6120 -1 1358 156 28 86 chr11 8035125 8035451 -140748021 + AluJo SINE Alu 1 307 -5 665 278 45 31 chr11 8035471 8035694 -140747778 + MIR SINE MIR 23 248 -14 237 299 104 0 chr11 8036176 8036243 -140747229 + MIR SINE MIR 40 113 -149 265 345 58 0 chr11 8036393 8036480 -140746992 - LTR67 LTR ERVL -367 190 99 345 338 88 44 chr11 8036758 8037054 -140746418 + MLT1K LTR MaLR 122 430 -158 531 296 11 49 chr11 8037137 8037404 -140746068 + L1MEd LINE L1 1001 1257 -4862 4152 166 67 44 chr11 8037529 8037551 -140745921 - L1M4 LINE L1 -998 5148 5128 1301 171 114 11 chr11 8037551 8037831 -140745641 - AluJo SINE Alu -3 309 1 4152 166 67 44 chr11 8037831 8038645 -140744827 - L1M4 LINE L1 -1018 5128 4283 612 254 0 0 chr11 8038645 8038786 -140744686 - FLAM_A SINE Alu 0 141 1 4152 166 67 44 chr11 8038786 8038940 -140744532 - L1M4 LINE L1 -1863 4283 4134 186 300 117 50 chr11 8039003 8039123 -140744349 - MIR SINE MIR -63 145 18 298 341 225 0 chr11 8040202 8040504 -140742968 + L2 LINE L2 2459 2828 -486 753 320 119 0 chr11 8040507 8040785 -140742687 - HERV16 LTR ERVL -2146 2850 2540 1429 320 79 9 chr11 8040785 8041356 -140742116 + ERVL LTR ERVL 2895 3505 -2259 3103 296 67 48 chr11 8041358 8043025 -140740447 + ERVL LTR ERVL 3357 5383 -381 905 281 139 19 chr11 8043189 8043563 -140739909 + LTR16B LTR ERVL 44 462 -2 1597 101 9 4 chr11 8043617 8043845 -140739627 + AluSc SINE Alu 1 229 -80 1966 125 10 3 chr11 8043880 8044168 -140739304 + AluJb SINE Alu 1 290 -22 1292 67 0 22 chr11 8044505 8044685 -140738787 + AluY SINE Alu 118 293 -18 219 121 0 0 chr11 8044754 8044787 -140738685 + MIR SINE MIR 190 222 -40 * 610 207 67 7 chr11 8044772 8044922 -140738550 + L2 LINE L2 2671 2829 -485 522 297 71 65 chr11 8044952 8045262 -140738210 - MLT1I LTR MaLR -27 382 71 381 223 204 0 chr11 8045345 8045502 -140737970 + L2 LINE L2 2839 3027 -286 263 266 219 41 chr11 8045517 8045686 -140737786 - MIR SINE MIR -12 250 52 1975 104 11 0 chr11 8045695 8045973 -140737499 + AluSx SINE Alu 17 297 -15 1990 103 10 13 chr11 8045984 8046296 -140737176 + AluY SINE Alu 1 311 0 1376 61 17 0 chr11 8046296 8046477 -140736995 + AluSg/x SINE Alu 129 312 0 193 311 97 19 chr11 8046746 8046849 -140736623 + L2 LINE L2 2656 2766 -548 607 174 22 58 chr11 8046896 8047034 -140736438 - AluJo SINE Alu -178 134 2 323 310 71 56 chr11 8047159 8047356 -140736116 + L2 LINE L2 2890 3089 -183 1911 116 34 0 chr11 8047362 8047654 -140735818 - AluSc SINE Alu -6 303 2 270 0 0 0 chr11 8047655 8047685 -140735787 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 1789 153 4 0 chr11 8047685 8047966 -140735506 - AluSx SINE Alu -30 282 1 1971 101 14 3 chr11 8048336 8048623 -140734849 + AluSq SINE Alu 5 294 -19 436 273 232 0 chr11 8048628 8048826 -140734646 - MIR SINE MIR -10 252 9 393 240 51 52 chr11 8049090 8049247 -140734225 + MIR3 SINE MIR 1 159 -61 2574 231 67 87 chr11 8049690 8049940 -140733532 + L1ME3A LINE L1 4585 4838 -1332 2131 128 0 0 chr11 8049940 8050244 -140733228 - AluSx SINE Alu -8 304 1 2574 231 67 87 chr11 8050244 8051268 -140732204 + L1ME3A LINE L1 4838 5881 -289 1735 139 52 14 chr11 8051268 8051555 -140731917 + AluJb SINE Alu 1 298 -14 2574 231 67 87 chr11 8051555 8051664 -140731808 + L1ME3A LINE L1 5881 5991 -179 988 161 15 65 chr11 8051664 8051740 -140731732 + MER5A DNA MER1_type 1 79 -110 2130 112 7 3 chr11 8051740 8052045 -140731427 + AluSg SINE Alu 1 306 -4 988 161 15 65 chr11 8052045 8052167 -140731305 + MER5A DNA MER1_type 79 189 0 2574 231 67 87 chr11 8052167 8052406 -140731066 + L1ME3A LINE L1 5991 6169 -1 517 238 82 41 chr11 8052400 8052644 -140730828 + HAL1 LINE L1 1092 1345 -1162 * 722 114 19 0 chr11 8052645 8052750 -140730722 - AluSp SINE Alu -205 108 2 500 236 103 10 chr11 8052925 8053128 -140730344 + L1ME4a LINE L1 5841 6062 -59 620 241 161 6 chr11 8054264 8054438 -140729034 + MIR SINE MIR 61 261 -1 4519 139 31 62 chr11 8054803 8055076 -140728396 + L1M1 LINE L1 4442 4722 -1581 1799 161 0 16 chr11 8055076 8055380 -140728092 + AluJb SINE Alu 1 299 -13 4519 139 31 62 chr11 8055380 8056110 -140727362 + L1M1 LINE L1 4722 5387 -916 461 63 0 0 chr11 8056110 8056173 -140727299 + L1PA6 LINE L1 6090 6152 -2 4519 139 31 62 chr11 8056173 8056425 -140727047 + L1M1 LINE L1 5387 5645 -658 765 134 164 0 chr11 8056426 8056560 -140726912 + MLT1A2 LTR MaLR 219 374 0 384 239 103 49 chr11 8056561 8056745 -140726727 + MARNA DNA Mariner 319 512 -74 1158 106 0 0 chr11 8057405 8057566 -140725906 + AluSg/x SINE Alu 133 293 -17 421 232 29 31 chr11 8057676 8057838 -140725634 - MLT2E LTR ERVL -87 576 201 500 216 0 0 chr11 8058208 8058296 -140725176 - MER81 DNA DNA 0 114 27 4083 177 99 17 chr11 8058379 8058420 -140725052 - L1MB7 LINE L1 0 6184 6148 2044 116 0 0 chr11 8058420 8058728 -140724744 + AluSx SINE Alu 1 308 0 4083 177 99 17 chr11 8058728 8059683 -140723789 - L1MB7 LINE L1 -36 6148 5106 4452 155 44 4 chr11 8059703 8060887 -140722585 + L1PB1 LINE L1 4852 6148 -3 250 224 294 0 chr11 8060995 8061080 -140722392 + L2 LINE L2 3203 3312 -1 525 258 155 7 chr11 8061723 8061878 -140721594 - MER5B DNA MER1_type 0 178 1 1433 222 28 25 chr11 8064116 8064472 -140719000 + L1MC4a LINE L1 5598 5954 -1854 3063 186 35 47 chr11 8064487 8064957 -140718515 + L1MB7 LINE L1 4616 5090 -1094 1557 153 22 7 chr11 8064957 8065232 -140718240 + AluJo SINE Alu 34 312 0 3063 186 35 47 chr11 8065232 8065749 -140717723 + L1MB7 LINE L1 5090 5587 -597 3034 176 12 40 chr11 8065768 8066111 -140717361 - L1MB3 LINE L1 -56 6127 5776 658 154 0 19 chr11 8066111 8066246 -140717226 + FLAM_A SINE Alu 20 142 0 3034 176 12 40 chr11 8066246 8066959 -140716513 - L1MB3 LINE L1 -407 5776 5084 2732 191 33 5 chr11 8066963 8067543 -140715929 + L1MB7 LINE L1 5580 6175 -9 5649 192 87 69 chr11 8067562 8068110 -140715362 + L1MC4a LINE L1 5938 6475 -1333 2166 70 46 0 chr11 8068110 8068394 -140715078 - AluSg SINE Alu -13 297 1 5649 192 87 69 chr11 8068394 8069307 -140714165 + L1MC4a LINE L1 6475 7440 -368 1464 151 78 4 chr11 8069307 8069459 -140714013 - AluJo SINE Alu -21 291 152 216 0 0 0 chr11 8069459 8069483 -140713989 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1464 151 78 4 chr11 8069483 8069601 -140713871 - AluJo SINE Alu -160 152 1 5649 192 87 69 chr11 8069601 8069977 -140713495 + L1MC4a LINE L1 7440 7808 0 2208 99 0 6 chr11 8069999 8070311 -140713161 + AluY SINE Alu 1 310 -1 1855 133 3 14 chr11 8070382 8070676 -140712796 - AluJo SINE Alu -9 303 13 2409 82 0 0 chr11 8071125 8071428 -140712044 + AluSx SINE Alu 1 303 -9 243 286 67 0 chr11 8071526 8071645 -140711827 + HAL1b LINE L1 1222 1348 0 195 42 0 0 chr11 8072080 8072104 -140711368 + (GA)n Simple_repeat Simple_repeat 2 25 0 244 219 31 78 chr11 8072558 8072622 -140710850 - L2 LINE L2 -2 3311 3251 1967 101 0 44 chr11 8072763 8073061 -140710411 + AluSq SINE Alu 5 289 -24 328 267 106 37 chr11 8073408 8073569 -140709903 + MIR3 SINE MIR 28 199 -9 382 300 124 26 chr11 8074416 8074831 -140708641 + L2 LINE L2 2795 3250 -22 1397 102 40 31 chr11 8074922 8075148 -140708324 - MER30 DNA MER1_type 0 230 3 1360 190 34 24 chr11 8076227 8076383 -140707089 - AluJb SINE Alu -14 298 145 219 103 0 0 chr11 8076383 8076422 -140707050 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 2207 80 3 7 chr11 8076422 8076709 -140706763 - AluSq SINE Alu -27 286 1 1360 190 34 24 chr11 8076709 8076846 -140706626 - AluJb SINE Alu -166 146 1 33 0 0 0 chr11 8076888 8076921 -140706551 + AT_rich Low_complexity Low_complexity 1 33 0 217 299 75 0 chr11 8077435 8077502 -140705970 + MIR SINE MIR 41 112 -96 245 215 154 0 chr11 8077581 8077646 -140705826 + MIR3 SINE MIR 131 205 -3 2246 96 3 3 chr11 8077711 8078024 -140705448 + AluSq SINE Alu 1 313 0 2301 80 0 0 chr11 8078567 8078869 -140704603 + AluY SINE Alu 1 302 -9 2180 90 7 3 chr11 8078877 8079177 -140704295 + AluSc SINE Alu 1 301 -8 1997 128 10 0 chr11 8079226 8079524 -140703948 + AluSx SINE Alu 1 301 -11 1559 183 0 10 chr11 8079712 8080012 -140703460 - AluJo SINE Alu -15 297 1 650 203 24 8 chr11 8080341 8080464 -140703008 + FLAM_C SINE Alu 2 126 -7 1420 175 144 0 chr11 8080481 8080738 -140702734 + AluJb SINE Alu 2 295 -7 2357 73 7 0 chr11 8080739 8081039 -140702433 + AluSp SINE Alu 5 306 -7 645 178 6 118 chr11 8081039 8081208 -140702264 + AluJo/FRAM SINE Alu 137 286 -16 2039 119 0 0 chr11 8081650 8081936 -140701536 + AluSg SINE Alu 1 286 -24 215 31 31 0 chr11 8081940 8081972 -140701500 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 867 155 83 28 chr11 8081986 8082167 -140701305 + L1MB8 LINE L1 5415 5605 -579 815 138 36 7 chr11 8082169 8082307 -140701165 + AluJb SINE Alu 2 143 -169 1989 120 3 13 chr11 8082307 8082446 -140701026 + AluSq SINE Alu 1 140 -173 2091 110 0 3 chr11 8082446 8082737 -140700735 + AluSg SINE Alu 6 295 -15 1989 120 3 13 chr11 8082737 8082898 -140700574 + AluSq SINE Alu 140 298 -15 2511 194 54 42 chr11 8082899 8083037 -140700435 + L1MB8 LINE L1 5598 5733 -445 2254 102 7 0 chr11 8083037 8083341 -140700131 + AluSq SINE Alu 1 306 -7 2511 194 54 42 chr11 8083341 8083879 -140699593 + L1MB8 LINE L1 5733 6132 -46 1771 113 84 0 chr11 8083879 8084153 -140699319 - AluSg SINE Alu -13 297 1 2511 194 54 42 chr11 8084153 8084195 -140699277 + L1MB8 LINE L1 6132 6172 -6 703 107 0 19 chr11 8084207 8084310 -140699162 + AluJb SINE Alu 202 302 -10 2358 66 0 3 chr11 8084337 8084639 -140698833 - AluY SINE Alu -10 301 1 2178 117 0 0 chr11 8084652 8084950 -140698522 - AluSx SINE Alu -14 298 1 3209 77 9 14 chr11 8084979 8085419 -140698053 - L1PA7 LINE L1 0 6154 5717 357 222 111 0 chr11 8085619 8085709 -140697763 + MIR3 SINE MIR 102 201 -7 607 191 7 95 chr11 8085801 8085836 -140697636 - AluJo SINE Alu -176 136 99 2192 95 3 0 chr11 8085836 8086132 -140697340 + AluSq SINE Alu 1 297 -16 2089 69 0 31 chr11 8086134 8086457 -140697015 + AluY SINE Alu 1 314 0 607 191 7 95 chr11 8086457 8086564 -140696908 - AluJo SINE Alu -214 98 3 1970 141 3 0 chr11 8086604 8086908 -140696564 + AluSx SINE Alu 1 305 -7 1716 174 0 28 chr11 8087679 8088000 -140695472 - AluJo SINE Alu 0 312 1 1999 117 10 10 chr11 8088347 8088646 -140694826 + AluSx SINE Alu 3 301 -11 272 263 90 43 chr11 8088989 8089121 -140694351 - MIR SINE MIR -42 166 35 2317 30 3 30 chr11 8089590 8089891 -140693581 - AluY SINE Alu -18 293 1 795 132 47 0 chr11 8089900 8090029 -140693443 - AluJb SINE Alu -176 136 2 2215 86 3 0 chr11 8090156 8090447 -140693025 - AluSp SINE Alu -21 292 1 711 287 28 64 chr11 8090447 8090739 -140692733 - L2 LINE L2 -232 3081 2801 950 184 50 6 chr11 8090739 8090918 -140692554 + MER5A DNA MER1_type 1 187 -2 711 287 28 64 chr11 8090918 8090950 -140692522 - L2 LINE L2 -512 2801 2769 1626 177 0 0 chr11 8091453 8091752 -140691720 - AluJb SINE Alu -13 299 1 1991 99 48 7 chr11 8091760 8092054 -140691418 - AluSq SINE Alu -7 306 1 1436 138 0 0 chr11 8092418 8092548 -140690924 + AluJo SINE Alu 1 133 -179 1772 166 17 0 chr11 8092548 8092844 -140690628 + AluJo SINE Alu 1 301 -11 1436 138 0 0 chr11 8092844 8092931 -140690541 + AluJo SINE Alu 132 218 -94 216 0 0 0 chr11 8092966 8092990 -140690482 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2164 110 0 3 chr11 8093048 8093357 -140690115 + AluSq SINE Alu 1 308 -5 2059 80 28 0 chr11 8093466 8093752 -140689720 + AluY SINE Alu 1 294 -17 266 206 0 98 chr11 8093753 8093855 -140689617 - L1ME3 LINE L1 -16 6146 6055 337 200 143 19 chr11 8093867 8093972 -140689500 - L1ME3 LINE L1 -151 5970 5853 563 285 65 40 chr11 8094194 8094287 -140689185 - L1ME3 LINE L1 -747 5399 5310 1965 107 14 7 chr11 8094287 8094576 -140688896 - AluSx SINE Alu -21 291 1 563 285 65 40 chr11 8094576 8094745 -140688727 - L1ME3 LINE L1 -836 5310 5417 1985 101 3 17 chr11 8094745 8095042 -140688430 - AluSq SINE Alu -20 293 1 563 285 65 40 chr11 8095042 8095248 -140688224 - L1ME3 LINE L1 -728 5418 5219 21 0 0 0 chr11 8095324 8095345 -140688127 + AT_rich Low_complexity Low_complexity 1 21 0 208 241 19 0 chr11 8095380 8095434 -140688038 + CT-rich Low_complexity Low_complexity 4 58 0 723 163 0 8 chr11 8095434 8095557 -140687915 - FLAM_A SINE Alu 0 142 21 2105 127 3 0 chr11 8095619 8095926 -140687546 - AluSq SINE Alu -4 309 2 1722 142 62 0 chr11 8095930 8096218 -140687254 - AluJb SINE Alu -6 306 1 2973 164 30 87 chr11 8096218 8096496 -140686976 - L1MB5 LINE L1 -41 6133 5841 2209 109 3 0 chr11 8096496 8096800 -140686672 - AluSx SINE Alu -7 305 1 2973 164 30 87 chr11 8096800 8097160 -140686312 - L1MB5 LINE L1 -333 5841 5534 3522 125 2 4 chr11 8097160 8097672 -140685800 - MER9 LTR ERVK 0 511 1 2973 164 30 87 chr11 8097672 8097722 -140685750 - L1MB5 LINE L1 -640 5534 5483 2263 84 0 3 chr11 8097983 8098281 -140685191 - AluSx SINE Alu -15 297 1 1399 234 77 36 chr11 8098281 8098725 -140684747 - MLT1C LTR MaLR 0 467 6 2255 99 0 0 chr11 8098755 8099058 -140684414 - AluSg SINE Alu -7 303 1 2605 230 61 20 chr11 8099096 8100080 -140683392 - L1ME3A LINE L1 -161 6009 4983 2330 74 3 0 chr11 8100444 8100743 -140682729 - AluSp SINE Alu -13 300 1 464 245 0 110 chr11 8101054 8101168 -140682304 - MIR SINE MIR -6 256 162 1513 171 40 3 chr11 8101168 8101466 -140682006 - AluJb SINE Alu -3 309 1 464 245 0 110 chr11 8101466 8101506 -140681966 - MIR SINE MIR -100 162 119 2174 127 97 76 chr11 8101539 8101639 -140681833 - MER39 LTR ERV1 -1 706 610 1667 169 19 7 chr11 8101639 8101946 -140681526 + AluJo SINE Alu 1 311 -1 2174 127 97 76 chr11 8101946 8101968 -140681504 - MER39 LTR ERV1 -97 610 590 2394 58 6 16 chr11 8101968 8102281 -140681191 + AluY SINE Alu 1 310 -1 2174 127 97 76 chr11 8102281 8102683 -140680789 - MER39 LTR ERV1 -117 590 170 255 103 0 0 chr11 8102842 8102881 -140680591 + (CAG)n Simple_repeat Simple_repeat 3 41 0 31 26 0 0 chr11 8103022 8103060 -140680412 + GC_rich Low_complexity Low_complexity 1 38 0 259 293 0 0 chr11 8104064 8104122 -140679350 + (CA)n Simple_repeat Simple_repeat 2 59 0 187 293 104 67 chr11 8105425 8105753 -140677719 + L2 LINE L2 1935 2274 -1040 22 35 0 0 chr11 8107531 8107560 -140675912 + AT_rich Low_complexity Low_complexity 1 29 0 301 325 107 19 chr11 8107597 8107803 -140675669 + L2 LINE L2 2350 2573 -741 432 238 99 61 chr11 8107855 8108144 -140675328 + MLT1K LTR MaLR 41 358 -230 241 245 147 29 chr11 8108222 8108324 -140675148 + L2 LINE L2 2615 2728 -586 1821 228 43 83 chr11 8108356 8108695 -140674777 + L1ME3 LINE L1 5555 5906 -256 5115 96 38 12 chr11 8108695 8109454 -140674018 + LTR17 LTR ERV1 1 779 -1 1821 228 43 83 chr11 8109454 8109489 -140673983 + L1ME3 LINE L1 5906 5941 -221 1513 180 0 43 chr11 8109489 8109623 -140673849 + AluJo SINE Alu 12 150 -162 1898 141 0 10 chr11 8109623 8109928 -140673544 + AluSx SINE Alu 1 302 -10 1513 180 0 43 chr11 8109928 8110093 -140673379 + AluJo SINE Alu 150 298 -14 1821 228 43 83 chr11 8110093 8110343 -140673129 + L1ME3 LINE L1 5941 6155 -7 250 300 34 45 chr11 8110360 8110534 -140672938 + L2 LINE L2 2793 2963 -309 1964 112 4 0 chr11 8110683 8110814 -140672658 + AluSg SINE Alu 1 130 -185 216 0 0 0 chr11 8110814 8110838 -140672634 + (TAA)n Simple_repeat Simple_repeat 2 25 0 1964 112 4 0 chr11 8110838 8111020 -140672452 + AluSg SINE Alu 130 315 0 251 242 148 66 chr11 8111175 8111357 -140672115 + MLT1L LTR MaLR 16 212 -403 * 298 277 122 27 chr11 8111326 8111474 -140671998 + MLT1K LTR MaLR 197 358 -230 235 232 14 14 chr11 8111519 8111588 -140671884 + MLT1L LTR MaLR 489 557 -58 4074 161 47 27 chr11 8111609 8111733 -140671739 - L1MB3 LINE L1 -2 6181 6061 2038 94 29 49 chr11 8111733 8112041 -140671431 - AluSx SINE Alu -10 302 1 4074 161 47 27 chr11 8112041 8112668 -140670804 - L1MB3 LINE L1 -122 6061 5415 21 0 0 0 chr11 8112784 8112805 -140670667 + AT_rich Low_complexity Low_complexity 1 21 0 394 265 66 73 chr11 8112909 8112938 -140670534 - L2 LINE L2 -4 3268 3240 642 300 107 0 chr11 8112938 8113171 -140670301 - MIR SINE MIR -1 261 4 394 265 66 73 chr11 8113171 8113277 -140670195 - L2 LINE L2 -32 3240 3134 6226 188 85 56 chr11 8113390 8113627 -140669845 - MER45R DNA AcHobo 0 1581 1352 1897 154 3 0 chr11 8113627 8113919 -140669553 + AluJo SINE Alu 1 293 -19 6226 188 85 56 chr11 8113919 8114615 -140668857 - MER45R DNA AcHobo -229 1352 584 1498 179 144 4 chr11 8114615 8114878 -140668594 + AluJo SINE Alu 1 300 -2 6226 188 85 56 chr11 8114878 8115477 -140667995 - MER45R DNA AcHobo -997 584 4 2162 101 39 0 chr11 8115516 8115802 -140667670 - AluSq SINE Alu -16 297 1 452 289 100 92 chr11 8115892 8116252 -140667220 + L2 LINE L2 2910 3272 0 2362 89 0 16 chr11 8116346 8116660 -140666812 + AluSc SINE Alu 1 309 0 1409 294 90 41 chr11 8116836 8118215 -140665257 + L1M4 LINE L1 3502 4948 -1198 433 258 70 48 chr11 8118482 8118711 -140664761 + L1MEc LINE L1 1397 1630 -4766 30 59 0 0 chr11 8118892 8118943 -140664529 + AT_rich Low_complexity Low_complexity 1 51 0 183 80 0 0 chr11 8118953 8118978 -140664494 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 189 0 0 0 chr11 8118977 8118998 -140664474 + (GA)n Simple_repeat Simple_repeat 2 22 0 359 376 59 0 chr11 8119001 8119203 -140664269 + L1MEc LINE L1 1918 2131 -4265 254 186 0 43 chr11 8119341 8119411 -140664061 + L1M4 LINE L1 3875 3941 -2205 1762 103 53 14 chr11 8119411 8119693 -140663779 + AluY SINE Alu 1 293 -18 13319 123 45 11 chr11 8120179 8122240 -140661232 - Tigger1 DNA MER2_type -287 2131 1 714 289 107 35 chr11 8122300 8122618 -140660854 + MLT1I LTR MaLR 69 409 0 532 253 42 57 chr11 8122639 8122696 -140660776 + L1M4 LINE L1 4316 4372 -1774 1658 153 37 48 chr11 8122696 8122991 -140660481 - AluJo SINE Alu -20 292 1 532 253 42 57 chr11 8122991 8123198 -140660274 + L1M4 LINE L1 4372 4576 -1570 259 268 8 55 chr11 8123281 8123408 -140660064 + C-rich Low_complexity Low_complexity 2 122 0 180 0 0 0 chr11 8123511 8123531 -140659941 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1240 103 0 29 chr11 8123610 8123785 -140659687 + AluSx SINE Alu 1 170 -142 2312 105 0 13 chr11 8123812 8124127 -140659345 - AluSx SINE Alu -1 311 1 957 182 0 16 chr11 8124163 8124350 -140659122 - AluJb SINE Alu -2 310 127 2166 116 0 3 chr11 8124372 8124666 -140658806 - AluSx SINE Alu -19 293 1 2246 102 3 0 chr11 8124698 8125010 -140658462 - AluSp SINE Alu 0 313 1 2425 199 59 109 chr11 8125562 8126236 -140657236 - HAL1 LINE L1 -634 1873 1167 2167 103 3 0 chr11 8126236 8126551 -140656921 - AluSq SINE Alu 0 316 1 1476 153 111 0 chr11 8126558 8126820 -140656652 - AluJb SINE Alu -21 291 1 2425 199 59 109 chr11 8126820 8126995 -140656477 - HAL1 LINE L1 -1346 1161 1063 1690 138 40 20 chr11 8126995 8127293 -140656179 - AluJo SINE Alu -8 304 1 2425 199 59 109 chr11 8127293 8127370 -140656102 - HAL1 LINE L1 -1444 1063 984 1763 187 76 22 chr11 8127502 8127739 -140655733 - L1MB8 LINE L1 0 6178 5955 180 0 0 0 chr11 8127739 8127759 -140655713 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2105 98 3 7 chr11 8127759 8128044 -140655428 - AluSq SINE Alu -29 284 1 1763 187 76 22 chr11 8128044 8128212 -140655260 - L1MB8 LINE L1 -222 5956 5750 1157 174 11 114 chr11 8128230 8128511 -140654961 - AluJo SINE Alu -19 293 42 568 196 116 0 chr11 8128529 8128641 -140654831 - FLAM_C SINE Alu -8 125 1 512 254 103 46 chr11 8128644 8128963 -140654509 - HAL1 LINE L1 -2137 370 2 473 317 18 18 chr11 8129007 8129171 -140654301 - MIR3 SINE MIR -9 199 36 2195 103 7 10 chr11 8129426 8129727 -140653745 + AluSx SINE Alu 1 300 -12 2106 128 0 10 chr11 8130253 8130557 -140652915 + AluSx SINE Alu 6 306 -6 1969 148 3 0 chr11 8131444 8131749 -140651723 - AluSx SINE Alu -6 306 1 1670 180 27 38 chr11 8131848 8131988 -140651484 - L1MD1 LINE L1 0 6242 6102 1457 163 17 21 chr11 8131988 8132276 -140651196 + AluSq SINE Alu 16 302 -11 1670 180 27 38 chr11 8132276 8132508 -140650964 - L1MD1 LINE L1 -140 6102 5874 1292 201 74 72 chr11 8132514 8133017 -140650455 - L1MDa LINE L1 -4561 1519 1016 802 171 0 29 chr11 8133035 8133175 -140650297 - AluJo SINE Alu -176 136 1 265 250 37 9 chr11 8133176 8133313 -140650159 - L1MDa LINE L1 -5064 1019 879 2184 101 13 7 chr11 8133328 8133626 -140649846 - AluSg SINE Alu -10 300 1 1533 238 146 33 chr11 8133635 8133834 -140649638 - L1MDa LINE L1 -5292 778 603 194 62 31 0 chr11 8133834 8133866 -140649606 + (TTA)n Simple_repeat Simple_repeat 1 33 0 1533 238 146 33 chr11 8133866 8134267 -140649205 - L1MDa LINE L1 -5467 603 110 1381 177 90 7 chr11 8134459 8134736 -140648736 + AluJo SINE Alu 3 302 -10 2180 129 0 3 chr11 8135152 8135454 -140648018 - AluSx SINE Alu -11 301 1 274 139 0 23 chr11 8136003 8136046 -140647426 - 5S rRNA rRNA -79 42 1 593 204 38 81 chr11 8137396 8137607 -140645865 - MER112 DNA MER1_type -58 202 1 826 262 16 60 chr11 8139092 8139344 -140644128 - MIR SINE MIR -6 256 16 1628 178 0 24 chr11 8139374 8139667 -140643805 - AluJo SINE Alu -26 286 1 251 173 53 93 chr11 8139712 8139787 -140643685 - MIR SINE MIR -70 192 121 189 386 112 12 chr11 8140209 8140411 -140643061 + L2 LINE L2 2805 3036 -236 1894 140 14 0 chr11 8140411 8140697 -140642775 - AluSx SINE Alu -22 290 1 189 386 112 12 chr11 8140697 8140735 -140642737 + L2 LINE L2 3036 3069 -203 1223 263 94 4 chr11 8142173 8142662 -140640810 - L2 LINE L2 0 3313 2766 2483 179 137 62 chr11 8142706 8143466 -140640006 - L1MC4 LINE L1 0 8042 7226 282 225 14 0 chr11 8143510 8143581 -140639891 - L1MC4 LINE L1 -805 7237 7166 1779 151 37 0 chr11 8143581 8143879 -140639593 - AluJo SINE Alu -3 309 1 1151 178 0 53 chr11 8143885 8144110 -140639362 - AluJo SINE Alu -15 297 85 707 140 156 1 chr11 8144113 8144289 -140639183 - L1MC4 LINE L1 -715 7143 6882 443 228 53 0 chr11 8144294 8144408 -140639064 + L2 LINE L2 3194 3313 0 * 726 273 5 20 chr11 8144407 8144605 -140638867 - L2 LINE L2 -600 2714 2520 937 265 79 0 chr11 8144608 8144861 -140638611 - Charlie8 DNA MER1_type -2143 274 2 1860 170 3 3 chr11 8145773 8146062 -140637410 - AluJb SINE Alu -23 289 1 2113 103 52 0 chr11 8146199 8146489 -140636983 - AluSq SINE Alu -8 305 1 2320 97 7 0 chr11 8146645 8146945 -140636527 - AluSc SINE Alu -7 302 1 1944 156 3 0 chr11 8147575 8147864 -140635608 - AluSx SINE Alu -22 290 1 2305 80 3 0 chr11 8147965 8148251 -140635221 - AluSg SINE Alu -22 288 2 246 245 0 0 chr11 8148466 8148515 -140634957 - MIR SINE MIR -70 138 90 2338 92 3 7 chr11 8148617 8148921 -140634551 - AluSx SINE Alu -9 303 1 1432 152 32 95 chr11 8149107 8149284 -140634188 - AluJo SINE Alu -16 296 146 2006 116 0 40 chr11 8149284 8149585 -140633887 - AluSx SINE Alu -23 289 1 1432 152 32 95 chr11 8149585 8149723 -140633749 - AluJo SINE Alu -166 146 1 950 182 82 29 chr11 8150412 8150692 -140632780 + L1MC5 LINE L1 7589 7883 -78 2232 116 0 0 chr11 8150775 8151068 -140632404 + AluY SINE Alu 2 294 -17 1341 73 11 28 chr11 8151176 8151355 -140632117 - AluSx SINE Alu -136 176 1 1884 153 3 16 chr11 8152386 8152694 -140630778 - AluJo SINE Alu -8 304 1 23 0 0 0 chr11 8152769 8152792 -140630680 + AT_rich Low_complexity Low_complexity 1 23 0 2463 84 0 3 chr11 8152979 8153290 -140630182 - AluSg SINE Alu 0 310 1 2074 87 3 93 chr11 8154097 8154430 -140629042 + AluSx SINE Alu 1 303 -9 267 241 0 0 chr11 8154971 8155025 -140628447 - L1ME4a LINE L1 -95 6026 5973 2493 110 48 20 chr11 8155071 8155425 -140628047 - THE1B LTR MaLR 0 364 1 11706 88 8 27 chr11 8155430 8155801 -140627671 - THE1B-int LTR MaLR -6 1574 1197 2057 125 3 28 chr11 8155801 8156122 -140627350 + AluSp SINE Alu 1 313 0 11706 88 8 27 chr11 8156122 8157356 -140626116 - THE1B-int LTR MaLR -383 1197 1 2324 104 75 23 chr11 8157356 8157701 -140625771 - THE1B LTR MaLR 0 364 2 2217 114 3 10 chr11 8158637 8158945 -140624527 - AluSx SINE Alu -6 306 1 188 115 0 0 chr11 8159639 8159665 -140623807 + L2 LINE L2 3241 3266 -6 268 228 28 4 chr11 8159780 8160043 -140623429 + (CA)n Simple_repeat Simple_repeat 1 269 0 1176 64 0 7 chr11 8160069 8160210 -140623262 - L1PA7 LINE L1 -15 6139 6000 739 299 104 31 chr11 8160370 8160541 -140622931 + L1ME3A LINE L1 4981 5138 -1024 2138 106 3 7 chr11 8160541 8160834 -140622638 - AluSx SINE Alu -20 292 1 739 299 104 31 chr11 8160834 8161374 -140622098 + L1ME3A LINE L1 5138 5652 -510 2429 70 0 3 chr11 8161374 8161673 -140621799 - AluY SINE Alu -13 298 1 1155 114 0 0 chr11 8161681 8161839 -140621633 - AluSp SINE Alu -19 294 137 626 232 52 21 chr11 8161839 8162033 -140621439 + L1ME3A LINE L1 5740 5939 -231 1524 152 119 15 chr11 8162035 8162304 -140621168 + AluJo SINE Alu 1 297 -15 427 228 56 1 chr11 8162370 8162509 -140620963 - MIR SINE MIR 0 262 115 2777 146 30 32 chr11 8162680 8163187 -140620285 - L1MA5 LINE L1 -4 6296 5791 561 193 30 37 chr11 8163244 8163379 -140620093 + MIR SINE MIR 15 148 -114 2095 130 13 0 chr11 8163407 8163706 -140619766 - AluSx SINE Alu -9 303 1 272 410 17 11 chr11 8163784 8163962 -140619510 - MIR3 SINE MIR -17 191 13 1846 158 0 16 chr11 8163988 8164292 -140619180 - AluJb SINE Alu -13 299 1 513 283 40 31 chr11 8164299 8164522 -140618950 - MIR SINE MIR -10 252 28 1777 164 10 7 chr11 8165280 8165572 -140617900 - AluJo SINE Alu -19 293 1 371 326 21 7 chr11 8165597 8165743 -140617729 - MIR SINE MIR -67 141 34 2446 70 3 0 chr11 8165945 8166243 -140617229 + AluSp SINE Alu 1 299 -14 197 308 26 26 chr11 8167670 8167787 -140615685 + L2 LINE L2 2894 3010 -262 366 298 69 23 chr11 8167791 8168009 -140615463 - MLT1L LTR MaLR -2 613 386 1530 200 10 23 chr11 8168074 8168374 -140615098 - AluJo SINE Alu -16 296 1 1818 181 13 3 chr11 8168460 8168769 -140614703 - AluJo SINE Alu 0 312 1 274 287 69 18 chr11 8168781 8168996 -140614476 - MLT1L LTR MaLR -310 201 1 207 303 10 71 chr11 8169370 8169469 -140614003 + L2 LINE L2 3221 3313 0 3924 180 127 77 chr11 8169747 8171018 -140612454 - L1M4 LINE L1 -964 5182 3849 760 249 5 22 chr11 8171019 8171204 -140612268 - AluJo SINE Alu -11 301 120 3733 197 52 47 chr11 8171226 8171613 -140611859 - L1MEc LINE L1 -3887 2509 2126 2403 62 13 10 chr11 8171613 8171919 -140611553 - AluY SINE Alu -4 307 1 3733 197 52 47 chr11 8171919 8172088 -140611384 - L1MEc LINE L1 -4270 2126 1959 573 273 8 0 chr11 8172088 8172220 -140611252 + FLAM_A SINE Alu 1 133 0 3733 197 52 47 chr11 8172220 8172615 -140610857 - L1MEc LINE L1 -4437 1959 1552 1041 98 0 0 chr11 8172615 8172748 -140610724 + AluSq/x SINE Alu 1 133 -180 2360 116 8 25 chr11 8172850 8173203 -140610269 - THE1B LTR MaLR -17 347 1 1550 158 32 80 chr11 8173524 8173835 -140609637 - AluJb SINE Alu -16 296 1 219 69 0 0 chr11 8173836 8173865 -140609607 + (T)n Simple_repeat Simple_repeat 1 29 0 824 234 5 16 chr11 8174438 8174630 -140608842 + AluSc SINE Alu 114 303 -6 1935 130 76 25 chr11 8174658 8175012 -140608460 - THE1C LTR MaLR -3 372 1 1009 281 35 31 chr11 8175014 8175526 -140607946 - L1MEc LINE L1 -4856 1540 1027 2744 231 103 15 chr11 8175534 8175563 -140607909 - L1MEc LINE L1 -5553 843 818 1412 228 10 7 chr11 8175563 8175857 -140607615 - AluJo SINE Alu -13 299 5 2744 231 103 15 chr11 8175857 8176568 -140606904 - L1MEc LINE L1 -5578 818 38 312 70 0 0 chr11 8176607 8176650 -140606822 + (TG)n Simple_repeat Simple_repeat 2 44 0 348 24 0 0 chr11 8177910 8177951 -140605521 + (TG)n Simple_repeat Simple_repeat 2 42 0 2125 128 3 7 chr11 8177969 8178275 -140605197 - AluSq SINE Alu -8 305 1 2040 113 7 3 chr11 8178831 8179114 -140604358 + AluSc SINE Alu 26 309 0 1834 168 21 0 chr11 8179449 8179735 -140603737 + AluJo SINE Alu 1 292 -20 2432 74 0 7 chr11 8179883 8180181 -140603291 + AluSg SINE Alu 1 296 -14 669 175 0 0 chr11 8180217 8180320 -140603152 - FLAM_A SINE Alu -20 122 20 223 167 0 0 chr11 8180464 8180500 -140602972 - L2 LINE L2 -12 3260 3225 1287 140 154 89 chr11 8180830 8181123 -140602349 + AluJb SINE Alu 1 312 0 21 36 0 0 chr11 8181384 8181412 -140602060 + GC_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr11 8181828 8181852 -140601620 + GC_rich Low_complexity Low_complexity 1 24 0 333 0 0 0 chr11 8182298 8182335 -140601137 + (A)n Simple_repeat Simple_repeat 1 37 0 279 0 0 0 chr11 8182440 8182471 -140601001 + (A)n Simple_repeat Simple_repeat 1 31 0 282 178 47 122 chr11 8182566 8182673 -140600799 - HsTC2 DNA Tc2 -275 1623 1525 2201 122 3 7 chr11 8182705 8183008 -140600464 - AluSx SINE Alu -10 302 1 297 243 14 0 chr11 8183080 8183154 -140600318 - HsTC2 DNA Tc2 -1823 75 1 994 231 163 36 chr11 8183173 8183536 -140599936 + L1ME4a LINE L1 5494 5902 -268 1161 208 25 36 chr11 8183539 8183813 -140599659 + AluJb SINE Alu 15 285 -27 2556 68 3 3 chr11 8183990 8184298 -140599174 + AluSp SINE Alu 1 308 -5 291 211 53 72 chr11 8184329 8184481 -140598991 + L1ME4a LINE L1 5932 6080 -41 200 320 0 26 chr11 8184505 8184583 -140598889 + MIR SINE MIR 24 99 -109 24 0 0 0 chr11 8184583 8184607 -140598865 + AT_rich Low_complexity Low_complexity 1 24 0 420 209 115 22 chr11 8184721 8184860 -140598612 + MIR SINE MIR 111 262 0 2356 85 0 3 chr11 8185168 8185463 -140598009 - AluY SINE Alu -17 294 1 418 192 58 19 chr11 8186456 8186560 -140596912 - L2 LINE L2 -18 3295 3188 3930 136 47 44 chr11 8186653 8186911 -140596561 + L1MB7 LINE L1 5430 5686 -498 2367 102 10 0 chr11 8186911 8187216 -140596256 + AluSq SINE Alu 1 308 -5 3930 136 47 44 chr11 8187216 8187710 -140595762 + L1MB7 LINE L1 5686 6184 0 550 247 54 40 chr11 8187871 8188008 -140595464 + MIR SINE MIR 1 135 -127 221 73 0 24 chr11 8188008 8188049 -140595423 + (TTTAA)n Simple_repeat Simple_repeat 3 42 0 1498 185 11 21 chr11 8188049 8188336 -140595136 - AluJb SINE Alu -28 284 1 550 247 54 40 chr11 8188336 8188420 -140595052 + MIR SINE MIR 134 226 -36 456 235 87 0 chr11 8188452 8188567 -140594905 - L1ME4a LINE L1 -293 5828 5704 228 317 119 20 chr11 8188619 8188720 -140594752 + MIR3 SINE MIR 6 116 -92 3453 126 4 0 chr11 8188768 8189270 -140594202 + L1PA15 LINE L1 5656 6159 -6 545 158 18 0 chr11 8189687 8189801 -140593671 + CT-rich Low_complexity Low_complexity 2 117 0 918 154 0 7 chr11 8189803 8189946 -140593526 - AluSc SINE Alu -36 273 132 1696 93 0 9 chr11 8189946 8190172 -140593300 - AluSg/x SINE Alu -4 308 85 258 241 35 0 chr11 8191350 8191408 -140592064 - L1ME4a LINE L1 -470 5651 5592 2078 133 3 0 chr11 8191437 8191730 -140591742 - AluSx SINE Alu -18 294 1 31 26 0 0 chr11 8191737 8191775 -140591697 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr11 8191909 8191939 -140591533 + AT_rich Low_complexity Low_complexity 1 30 0 664 302 21 25 chr11 8192228 8192470 -140591002 + MIR SINE MIR 4 244 -18 236 302 48 56 chr11 8192953 8193079 -140590393 - MIR SINE MIR -86 176 52 1853 121 15 95 chr11 8193224 8193562 -140589910 - AluSx SINE Alu -1 311 1 2244 109 20 0 chr11 8193572 8193876 -140589596 - AluSx SINE Alu -2 310 1 451 290 37 19 chr11 8194706 8194868 -140588604 - MIR3 SINE MIR -15 193 29 409 259 83 62 chr11 8195464 8195657 -140587815 + MIR SINE MIR 10 206 -56 199 337 146 7 chr11 8196776 8197070 -140586402 + L2 LINE L2 1941 2275 -1039 187 294 0 0 chr11 8197235 8197286 -140586186 + L2 LINE L2 2447 2497 -817 245 308 81 38 chr11 8199268 8199453 -140584019 + MIR3 SINE MIR 16 208 0 2221 117 7 0 chr11 8201048 8201356 -140582116 - AluSx SINE Alu -2 310 1 303 236 14 0 chr11 8202825 8202897 -140580575 - L2 LINE L2 0 3272 3200 1523 113 42 0 chr11 8204849 8205062 -140578410 - AluSg/x SINE Alu -9 301 80 832 182 44 0 chr11 8205740 8205899 -140577573 + MER7A DNA MER2_type 6 169 -177 845 179 103 0 chr11 8205983 8206139 -140577333 + MER7A DNA MER2_type 174 345 -1 2300 85 3 0 chr11 8206342 8206653 -140576819 - AluSp SINE Alu 0 312 1 843 226 11 27 chr11 8207083 8207269 -140576203 + MIR SINE MIR 7 189 -73 284 306 92 51 chr11 8209211 8209505 -140573967 + L2 LINE L2 2915 3220 -52 3213 196 50 53 chr11 8210349 8211333 -140572139 - L1MC5 LINE L1 -430 7531 6633 1200 162 60 0 chr11 8211473 8211689 -140571783 - MSTB1 LTR MaLR 0 432 204 688 159 0 0 chr11 8211689 8211796 -140571676 + AluSq/x SINE Alu 2 108 -205 3615 80 31 0 chr11 8411857 8412333 -140371139 - L1P LINE L1 -5649 497 7 1550 133 0 0 chr11 8412504 8412715 -140370757 + AluSq SINE Alu 79 289 -24 11619 83 10 1 chr11 8413018 8414647 -140368825 - L1P LINE L1 -1485 4661 3018 1066 68 25 0 chr11 8414640 8414802 -140368670 + L1P LINE L1 4675 4840 -1306 * 270 0 0 0 chr11 8414902 8414932 -140368540 + (TC)n Simple_repeat Simple_repeat 2 31 0 * 297 0 0 0 chr11 8414931 8414964 -140368508 + (TG)n Simple_repeat Simple_repeat 2 34 0 5352 110 15 23 chr11 8415691 8416591 -140366881 + L1MA4A LINE L1 5231 6122 -181 292 185 0 62 chr11 8416595 8416676 -140366796 + L1MA4A LINE L1 6188 6263 -40 7530 27 5 0 chr11 8416778 8417939 -140365533 + L1PA4 LINE L1 4980 6144 -11 1751 281 117 37 chr11 8417948 8418796 -140364676 + L1M4 LINE L1 2354 3133 -3013 1759 165 0 52 chr11 8418796 8419123 -140364349 + AluJo SINE Alu 1 310 -2 1751 281 117 37 chr11 8419123 8419801 -140363671 + L1M4 LINE L1 3133 4001 -2145 13233 41 1 3 chr11 8419916 8421566 -140361906 + L1P LINE L1 1422 3067 -3079 1324 209 38 48 chr11 8421666 8421744 -140361728 - L1M4 LINE L1 -1798 4348 4271 180 0 0 0 chr11 8421744 8421764 -140361708 + (TG)n Simple_repeat Simple_repeat 2 21 0 1324 209 38 48 chr11 8421764 8422024 -140361448 - L1M4 LINE L1 -1875 4271 4012 7388 71 22 2 chr11 8422024 8423838 -140359634 - L1PA7 LINE L1 -3 6151 4316 1324 209 38 48 chr11 8423838 8423871 -140359601 - L1M4 LINE L1 -2134 4012 3980 14747 27 5 0 chr11 8424017 8426484 -140356988 - L1PA4 LINE L1 -57 6098 3625 2254 102 7 3 chr11 8426595 8426900 -140356572 + AluSp SINE Alu 1 306 -7 7178 154 17 2 chr11 8427276 8429554 -140353918 - L1PB2 LINE L1 -1 6150 3837 377 171 199 74 chr11 8429724 8429837 -140353635 - MER112 DNA MER1_type -15 245 147 1807 169 3 10 chr11 8429837 8430144 -140353328 + AluJo SINE Alu 1 305 -7 377 171 199 74 chr11 8430144 8430206 -140353266 - MER112 DNA MER1_type -112 148 48 2132 123 0 0 chr11 8430217 8430534 -140352938 + AluSx SINE Alu 1 317 0 772 269 60 0 chr11 8430936 8431137 -140352335 - MIR SINE MIR -9 253 41 216 283 0 0 chr11 8431521 8431574 -140351898 + (TATATG)n Simple_repeat Simple_repeat 6 58 0 1139 156 12 38 chr11 8431652 8432052 -140351420 + MLT1D LTR MaLR 1 505 0 461 268 196 22 chr11 8432123 8432347 -140351125 + L3 LINE CR1 1191 1453 -124 421 269 35 47 chr11 8432391 8432562 -140350910 - MIR SINE MIR -40 222 54 242 379 73 8 chr11 8432626 8432750 -140350722 - L2 LINE L2 0 3272 3141 1383 292 108 15 chr11 8433115 8434008 -140349464 + L1M4 LINE L1 4247 5222 -924 1569 144 72 22 chr11 8434092 8434369 -140349103 - AluJo SINE Alu -19 293 3 855 133 47 0 chr11 8434978 8435106 -140348366 + AluJo SINE Alu 1 134 -178 2508 172 0 0 chr11 8435347 8435782 -140347690 + L1P LINE L1 4497 4931 -1215 2159 116 0 54 chr11 8436031 8436384 -140347088 + MER1B DNA MER1_type 4 337 0 363 163 0 0 chr11 8436910 8436990 -140346482 + CT-rich Low_complexity Low_complexity 1 80 0 459 224 0 0 chr11 8437060 8437167 -140346305 + (TA)n Simple_repeat Simple_repeat 2 108 0 785 270 0 38 chr11 8438346 8438557 -140344915 + MIR SINE MIR 6 208 -54 267 286 20 31 chr11 8438765 8438863 -140344609 + L3 LINE CR1 1480 1576 -1 1862 205 63 14 chr11 8439044 8439348 -140344124 + MER63B DNA MER1_type 1 332 -730 1829 140 16 45 chr11 8439348 8439662 -140343810 - AluJo SINE Alu -7 305 1 1862 205 63 14 chr11 8439662 8439771 -140343701 + MER63B DNA MER1_type 332 434 -2 6045 96 27 8 chr11 8440542 8441950 -140341522 - L1PA15 LINE L1 -8 6157 4722 3924 154 70 35 chr11 8442005 8443567 -140339905 - L1MB7 LINE L1 -19 6165 4556 5740 139 28 16 chr11 8443773 8445117 -140338355 + L1PA14 LINE L1 4803 6161 0 675 269 137 15 chr11 8445171 8445506 -140337966 - L1MC/D LINE L1 -2059 5749 5374 206 234 31 47 chr11 8445683 8445747 -140337725 - L2 LINE L2 0 3313 3251 1611 187 49 6 chr11 8446600 8446948 -140336524 - Tigger6a DNA MER2_type -1 1082 720 1695 166 47 1 chr11 8446950 8447390 -140336082 - Tigger6a DNA MER2_type -576 507 2 503 247 91 0 chr11 8447665 8447819 -140335653 - L1 LINE L1 -1037 5109 4942 39359 70 7 25 chr11 8447828 8453924 -140329548 - L1PA6 LINE L1 -168 5986 1 3547 174 434 9 chr11 8453923 8455145 -140328327 - L1 LINE L1 -1189 4957 3217 * 603 277 148 57 chr11 8455150 8455645 -140327827 - L1MEd LINE L1 -5028 1091 552 3782 92 24 16 chr11 8456047 8456622 -140326850 + L1MA3 LINE L1 5726 6305 0 1708 82 10 33 chr11 8458519 8458822 -140324650 + Tigger3(Golem) DNA MER2_type 2248 2543 -486 852 323 46 32 chr11 8458822 8459323 -140324149 + L1M3b LINE L1 5 512 -5769 687 289 0 5 chr11 8459588 8459799 -140323673 + L1M3b LINE L1 1096 1305 -4976 2080 156 0 0 chr11 8459799 8460094 -140323378 + AluSx SINE Alu 1 295 -17 767 137 75 27 chr11 8460133 8460279 -140323193 + THE1B LTR MaLR 197 349 -15 3216 89 16 10 chr11 8460290 8460784 -140322688 + THE1B-int LTR MaLR 1 497 -1083 720 122 0 0 chr11 8460784 8460882 -140322590 + AluSg SINE Alu 1 98 -212 331 138 11 23 chr11 8460882 8460969 -140322503 + L1MA4 LINE L1 3109 3194 -2952 5814 178 51 31 chr11 8461287 8463054 -140320418 + L1MA4 LINE L1 3177 4907 -1393 3164 32 0 0 chr11 8463054 8463427 -140320045 - L1PA5 LINE L1 0 6154 5782 5814 178 51 31 chr11 8463427 8463715 -140319757 + L1MA4 LINE L1 4907 5188 -1112 2345 100 3 0 chr11 8463715 8464026 -140319446 + AluSq SINE Alu 1 312 -1 5814 178 51 31 chr11 8464026 8464920 -140318552 + L1MA4 LINE L1 5188 6289 -11 2722 131 49 10 chr11 8464920 8465410 -140318062 + Tigger3(Golem) DNA MER2_type 2521 3029 0 399 147 0 0 chr11 8465410 8465478 -140317994 - L1 LINE L1 -1406 4740 4673 268 341 23 8 chr11 8465516 8465645 -140317827 + L2 LINE L2 3179 3309 -4 334 136 25 0 chr11 8466850 8466931 -140316541 + (TA)n Simple_repeat Simple_repeat 1 83 0 1883 46 0 13 chr11 8466984 8467222 -140316250 + L1PA7 LINE L1 5920 6154 0 3084 91 24 4 chr11 8467335 8467797 -140315675 - L1MA1 LINE L1 0 6302 5832 1812 129 43 7 chr11 8468223 8468502 -140314970 + AluJb SINE Alu 3 291 -21 1058 180 43 5 chr11 8468606 8468817 -140314655 - MER20 DNA MER1_type 0 219 1 22 35 0 0 chr11 8470054 8470083 -140313389 + AT_rich Low_complexity Low_complexity 1 29 0 2538 210 28 58 chr11 8470180 8470235 -140313237 - L1MA9 LINE L1 -39 6273 6218 261 0 0 0 chr11 8470235 8470264 -140313208 + (GA)n Simple_repeat Simple_repeat 2 30 0 2538 210 28 58 chr11 8470264 8470720 -140312752 - L1MA9 LINE L1 -94 6218 5790 1496 208 26 29 chr11 8470720 8471032 -140312440 - AluJo SINE Alu -1 311 1 2538 210 28 58 chr11 8471032 8471295 -140312177 - L1MA9 LINE L1 -522 5790 5521 199 161 0 0 chr11 8472481 8472512 -140310960 - L2 LINE L2 -1 3271 3241 1094 220 46 9 chr11 8472778 8472996 -140310476 + MIR SINE MIR 6 231 -31 1623 184 13 7 chr11 8473016 8473325 -140310147 - AluJb SINE Alu -1 311 1 744 97 0 18 chr11 8473389 8473503 -140309969 - AluSg SINE Alu 0 310 199 688 113 21 0 chr11 8473508 8473605 -140309867 - AluSg SINE Alu -210 100 2 1132 181 10 42 chr11 8473654 8473841 -140309631 + L1MDa LINE L1 1065 1256 -5205 1637 155 44 73 chr11 8473841 8473952 -140309520 + AluJo SINE Alu 1 114 -198 2362 98 3 0 chr11 8473952 8474258 -140309214 + AluSx SINE Alu 2 308 -4 1637 155 44 73 chr11 8474258 8474463 -140309009 + AluJo SINE Alu 114 308 -4 1132 181 10 42 chr11 8474463 8474593 -140308879 + L1MDa LINE L1 1256 1668 -4793 330 325 13 53 chr11 8474597 8474791 -140308681 - L1MC4 LINE L1 -393 7467 7227 2418 71 0 0 chr11 8475010 8475306 -140308166 - AluSq SINE Alu -16 297 2 425 291 24 0 chr11 8476516 8476643 -140306829 - MER117 DNA MER1_type 0 197 68 1245 210 0 0 chr11 8476821 8477045 -140306427 - MER58A DNA MER1_type 0 224 1 494 341 39 0 chr11 8477053 8477235 -140306237 + MER5A DNA MER1_type 1 189 0 357 319 69 5 chr11 8477256 8477444 -140306028 - L1M4 LINE L1 -2577 3569 3370 1220 236 143 31 chr11 8477446 8477962 -140305510 + MLT1G LTR MaLR 1 574 -16 575 296 73 45 chr11 8477989 8478309 -140305163 - L1M4 LINE L1 -2793 3353 3013 2114 132 0 3 chr11 8478309 8478619 -140304853 + AluSx SINE Alu 1 309 -3 575 296 73 45 chr11 8478619 8478788 -140304684 - L1M4 LINE L1 -3133 3013 2850 1622 212 102 36 chr11 8479342 8479814 -140303658 - MLT1D LTR MaLR 0 505 3 664 228 24 134 chr11 8480167 8480421 -140303051 + MIR SINE MIR 6 231 -31 1366 125 76 163 chr11 8480736 8481209 -140302263 - LTR23 LTR ERV1 -5 432 1 22 35 0 0 chr11 8481367 8481396 -140302076 + AT_rich Low_complexity Low_complexity 1 29 0 446 225 43 7 chr11 8481831 8481969 -140301503 - L1ME3A LINE L1 -6 6164 6022 1749 138 35 48 chr11 8482025 8482336 -140301136 + AluSq SINE Alu 1 307 -6 248 195 67 65 chr11 8482389 8482532 -140300940 - L1ME3A LINE L1 -211 5955 5811 1651 261 52 24 chr11 8482630 8482893 -140300579 - L1M3 LINE L1 -361 6308 6054 1994 117 21 3 chr11 8482893 8483183 -140300289 - AluSc SINE Alu -14 295 1 1651 261 52 24 chr11 8483183 8484261 -140299211 - L1M3 LINE L1 -615 6054 4914 787 237 28 0 chr11 8484272 8484429 -140299043 - L1MA10 LINE L1 -7 6327 6161 186 43 0 0 chr11 8484429 8484452 -140299020 + (TTA)n Simple_repeat Simple_repeat 2 24 0 787 237 28 0 chr11 8484452 8484505 -140298967 - L1MA10 LINE L1 -173 6161 6111 965 127 5 89 chr11 8484506 8484719 -140298753 - MER6 DNA MER2_type 0 865 671 851 185 11 0 chr11 8484725 8484959 -140298513 - L1M2 LINE L1 -743 5403 5211 22 0 0 0 chr11 8484959 8484981 -140298491 + AT_rich Low_complexity Low_complexity 1 22 0 6153 77 17 7 chr11 8484984 8486501 -140296971 - SVA Other Other -760 1369 32 213 39 0 0 chr11 8486521 8486547 -140296925 + (GGGAGA)n Simple_repeat Simple_repeat 4 29 0 824 219 25 21 chr11 8486709 8486947 -140296525 - L1M3 LINE L1 -2269 4375 4137 1449 189 32 74 chr11 8486956 8487043 -140296429 - L1M3 LINE L1 -4732 1914 1825 2066 129 30 3 chr11 8487043 8487338 -140296134 + AluJb SINE Alu 1 303 -9 1449 189 32 74 chr11 8487338 8487721 -140295751 - L1M3 LINE L1 -4821 1825 1464 2514 61 0 0 chr11 8487931 8488226 -140295246 + AluY SINE Alu 1 295 -16 23 0 0 0 chr11 8488243 8488266 -140295206 + AT_rich Low_complexity Low_complexity 1 23 0 225 214 0 0 chr11 8488650 8488692 -140294780 + T-rich Low_complexity Low_complexity 1 42 0 36570 83 4 7 chr11 8488701 8494854 -140288618 - L1PA6 LINE L1 -7 6147 11 5387 211 26 44 chr11 8494872 8495054 -140288418 - L1M3 LINE L1 -5070 1472 1288 1648 201 55 26 chr11 8495054 8495437 -140288035 + MSTD LTR MaLR 3 396 0 5387 211 26 44 chr11 8495437 8495518 -140287954 - L1M3 LINE L1 -5254 1288 1207 1828 187 10 3 chr11 8495518 8495828 -140287644 - AluJo SINE Alu 0 312 1 5387 211 26 44 chr11 8495828 8497054 -140286418 - L1M3 LINE L1 -5335 1207 8 760 326 112 58 chr11 8497086 8497362 -140286110 + L2 LINE L2 1932 2192 -1122 1950 144 13 0 chr11 8497362 8497661 -140285811 - AluJo SINE Alu -9 303 1 760 326 112 58 chr11 8497661 8498142 -140285330 + L2 LINE L2 2192 2730 -584 1041 321 67 29 chr11 8498151 8498876 -140284596 - L2 LINE L2 -69 3203 2464 392 331 16 8 chr11 8501532 8501656 -140281816 + L2 LINE L2 2927 3051 -221 299 277 8 108 chr11 8501688 8501772 -140281700 - MIR SINE MIR -27 235 167 2353 68 0 7 chr11 8501772 8502098 -140281374 + AluY SINE Alu 1 311 0 299 277 8 108 chr11 8502098 8502143 -140281329 - MIR SINE MIR -95 167 119 227 270 16 16 chr11 8503384 8503447 -140280025 - L2 LINE L2 -60 3212 3150 22 0 0 0 chr11 8503470 8503492 -140279980 + AT_rich Low_complexity Low_complexity 1 22 0 435 242 245 49 chr11 8504466 8504792 -140278680 - L3 LINE CR1 -7 1570 1181 181 241 19 74 chr11 8504855 8504909 -140278563 - L2 LINE L2 -7 3265 3215 2225 128 0 0 chr11 8504937 8505242 -140278230 - AluSx SINE Alu -7 305 1 2183 70 10 73 chr11 8505356 8505670 -140277802 - AluSc SINE Alu -15 294 1 366 23 0 0 chr11 8507620 8507663 -140275809 + (TG)n Simple_repeat Simple_repeat 2 44 0 736 272 111 0 chr11 8508085 8508387 -140275085 - L2 LINE L2 -175 3138 2793 334 239 36 56 chr11 8508547 8508723 -140274749 - MLT1L LTR MaLR -308 161 7 520 196 142 88 chr11 8509346 8509586 -140273886 + MER112 DNA MER1_type 8 260 0 2013 132 0 7 chr11 8510614 8510903 -140272569 - AluSp SINE Alu -17 296 10 1094 210 39 11 chr11 8511155 8511441 -140272031 - AluSq SINE Alu -9 294 1 24 0 0 0 chr11 8512023 8512047 -140271425 + AT_rich Low_complexity Low_complexity 1 24 0 25 75 0 0 chr11 8512613 8512666 -140270806 + AT_rich Low_complexity Low_complexity 1 53 0 1474 166 70 0 chr11 8512726 8512985 -140270487 + Tigger1 DNA MER2_type 230 506 -1912 1668 186 3 14 chr11 8513103 8513394 -140270078 + AluJo SINE Alu 1 288 -24 24 0 0 0 chr11 8513397 8513421 -140270051 + AT_rich Low_complexity Low_complexity 1 24 0 325 300 8 8 chr11 8513683 8513813 -140269659 - HAL1b LINE L1 -10 1338 1209 13779 130 61 3 chr11 8514249 8516532 -140266940 + Tigger1 DNA MER2_type 2 2418 0 2245 121 28 25 chr11 8516953 8517316 -140266156 + THE1B LTR MaLR 1 364 0 11707 88 14 6 chr11 8517316 8517375 -140266097 + THE1B-int LTR MaLR 1 58 -1522 2179 127 0 0 chr11 8517375 8517667 -140265805 - AluSc SINE Alu -17 292 1 11707 88 14 6 chr11 8517667 8519175 -140264297 + THE1B-int LTR MaLR 58 1580 0 2209 137 19 25 chr11 8519175 8519541 -140263931 + THE1B LTR MaLR 1 364 0 565 264 104 14 chr11 8521919 8522283 -140261189 - L1MEc LINE L1 -4943 1453 1057 23 33 0 0 chr11 8522285 8522315 -140261157 + AT_rich Low_complexity Low_complexity 1 30 0 3813 229 47 9 chr11 8522341 8523239 -140260233 - L1MEc LINE L1 -5430 966 35 207 322 20 72 chr11 8523875 8524027 -140259445 + L3 LINE CR1 843 986 -591 998 238 116 47 chr11 8524200 8524519 -140258953 + MER58B DNA MER1_type 1 341 0 345 343 98 59 chr11 8524600 8525108 -140258364 + L2 LINE L2 2732 3272 0 1483 127 139 11 chr11 8525688 8525955 -140257517 - L1MC1 LINE L1 -8 6325 6025 317 200 167 22 chr11 8526064 8526154 -140257318 - MIR SINE MIR -57 151 49 2210 90 0 10 chr11 8526306 8526596 -140256876 - AluY SINE Alu -24 287 1 448 262 93 0 chr11 8528060 8528167 -140255305 + L2 LINE L2 3197 3313 0 22 0 0 0 chr11 8528719 8528741 -140254731 + AT_rich Low_complexity Low_complexity 1 22 0 1529 164 13 34 chr11 8529324 8529622 -140253850 - AluJb SINE Alu -20 292 1 2070 128 7 0 chr11 8529909 8530199 -140253273 - AluSx SINE Alu -20 292 1 3123 189 22 84 chr11 8530310 8531245 -140252227 - L1ME1 LINE L1 -2 6176 5318 427 255 204 4 chr11 8531233 8531464 -140252008 - L1ME1 LINE L1 -2232 3914 3638 * 6821 69 20 9 chr11 8531555 8532330 -140251142 - L1PA7 LINE L1 -2 6152 5361 15285 30 4 0 chr11 8532330 8534923 -140248549 - L1PA4 LINE L1 -1 6154 3550 6821 69 20 9 chr11 8534923 8535582 -140247890 - L1PA7 LINE L1 -793 5361 4711 432 127 0 14 chr11 8535687 8535758 -140247714 + L1P LINE L1 4602 4671 -1475 237 308 28 22 chr11 8535848 8536030 -140247442 - L1ME1 LINE L1 -2664 3482 3300 579 269 0 7 chr11 8536095 8536236 -140247236 - L2 LINE L2 -2 3311 3172 299 268 37 0 chr11 8536313 8536395 -140247077 + MIR SINE MIR 149 233 -29 538 289 98 100 chr11 8536495 8536605 -140246867 - L1ME1 LINE L1 -2931 3215 3106 1480 187 20 47 chr11 8536605 8536905 -140246567 - AluJo SINE Alu -13 299 8 538 289 98 100 chr11 8536905 8537375 -140246097 - L1ME1 LINE L1 -3040 3106 2636 1438 151 94 51 chr11 8537506 8537857 -140245615 - L1ME2 LINE L1 0 6164 5799 357 93 0 0 chr11 8538560 8538614 -140244858 + (TG)n Simple_repeat Simple_repeat 2 55 0 335 250 30 50 chr11 8538677 8538777 -140244695 + MIR SINE MIR 79 176 -86 1677 184 3 20 chr11 8538972 8539271 -140244201 + AluJo SINE Alu 1 294 -18 23 33 0 0 chr11 8540018 8540048 -140243424 + AT_rich Low_complexity Low_complexity 1 30 0 336 360 75 18 chr11 8540443 8540721 -140242751 + L2 LINE L2 2451 2744 -570 245 116 58 0 chr11 8540744 8540813 -140242659 + (TA)n Simple_repeat Simple_repeat 1 73 0 204 40 0 0 chr11 8540834 8540859 -140242613 + (GCATG)n Simple_repeat Simple_repeat 3 27 0 250 325 133 21 chr11 8541262 8541450 -140242022 + L2 LINE L2 3104 3312 -1 2175 123 0 0 chr11 8543633 8543934 -140239538 + AluSx SINE Alu 1 301 -11 27 0 0 0 chr11 8544441 8544468 -140239004 + AT_rich Low_complexity Low_complexity 1 27 0 270 304 87 9 chr11 8545572 8545687 -140237785 + L2 LINE L2 3163 3286 -27 907 260 115 11 chr11 8545821 8546090 -140237382 + MLT1J LTR MaLR 156 452 -59 215 281 62 0 chr11 8546255 8546319 -140237153 - L2 LINE L2 -4 3309 3242 2011 92 18 95 chr11 8546361 8546688 -140236784 - AluSc SINE Alu -7 302 1 1596 298 63 21 chr11 8546692 8547266 -140236206 - L2 LINE L2 -606 2708 2111 238 309 0 15 chr11 8548356 8548424 -140235048 + MER5A DNA MER1_type 123 189 0 248 294 59 73 chr11 8548497 8548633 -140234839 - L2 LINE L2 0 3272 3139 2389 87 0 0 chr11 8549466 8549764 -140233708 + AluSg SINE Alu 1 298 -12 293 319 142 35 chr11 8549832 8549973 -140233499 - L2 LINE L2 0 3272 3117 1086 94 29 12 chr11 8550063 8550233 -140233239 - MER30 DNA MER1_type -57 173 1 1600 202 84 33 chr11 8551475 8552080 -140231392 - Charlie2 DNA MER1_type -225 2637 2002 639 313 45 38 chr11 8552778 8553485 -140229987 + HAL1 LINE L1 958 1669 -838 257 313 88 0 chr11 8553842 8554059 -140229413 + L1ME2 LINE L1 3038 3273 -2873 429 136 0 0 chr11 8554060 8554119 -140229353 + AluS SINE Alu 2 60 -258 2088 127 64 11 chr11 8554119 8554496 -140228976 + LTR1 LTR ERV1 34 430 -355 1072 176 20 20 chr11 8556574 8556773 -140226699 - MER58A DNA MER1_type 0 224 26 244 187 0 44 chr11 8557662 8557753 -140225719 + (CATATA)n Simple_repeat Simple_repeat 5 91 0 524 286 32 68 chr11 8558046 8558298 -140225174 + L3 LINE CR1 1330 1572 -5 183 80 0 0 chr11 8558383 8558408 -140225064 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 2291 125 0 0 chr11 8559089 8559401 -140224071 + AluSx SINE Alu 1 312 0 605 264 181 0 chr11 8559862 8560078 -140223394 + MIR SINE MIR 6 260 -2 394 320 76 20 chr11 8560338 8560535 -140222937 + MLT1H LTR MaLR 50 257 -292 2420 169 37 13 chr11 8560709 8561216 -140222256 + MER68 LTR ERV1 1 562 0 530 234 58 21 chr11 8561645 8561833 -140221639 - L1MEc LINE L1 -4432 2289 2095 1124 255 91 0 chr11 8561854 8562238 -140221234 - L1MEc LINE L1 -4727 1813 1395 5795 224 68 43 chr11 8562247 8563692 -140219780 + L1ME2 LINE L1 3365 4773 -1391 2679 39 0 3 chr11 8563692 8564001 -140219471 - AluY SINE Alu -3 308 1 5795 224 68 43 chr11 8564001 8564708 -140218764 + L1ME2 LINE L1 4773 5461 -703 2106 113 14 0 chr11 8564708 8564999 -140218473 - AluY SINE Alu -16 295 1 5795 224 68 43 chr11 8564999 8565581 -140217891 + L1ME2 LINE L1 5461 6164 0 1053 244 76 21 chr11 8566451 8566779 -140216693 + L1MC4a LINE L1 5595 5940 -1868 2665 90 28 3 chr11 8566797 8567152 -140216320 - THE1B LTR MaLR 0 364 1 324 161 0 16 chr11 8567157 8567219 -140216253 + MER116 DNA Mariner 1 61 -19 22 0 0 0 chr11 8571695 8571717 -140211755 + AT_rich Low_complexity Low_complexity 1 22 0 660 259 74 26 chr11 8572278 8572548 -140210924 + LTR33 LTR ERVL 1 283 -238 663 225 34 98 chr11 8574180 8574416 -140209056 - MIR SINE MIR -9 253 33 2552 44 3 0 chr11 8575694 8575987 -140207485 + AluY SINE Alu 1 294 -17 427 212 18 26 chr11 8576009 8576122 -140207350 - L2 LINE L2 -2 3311 3200 662 285 163 30 chr11 8576361 8576787 -140206685 - L2 LINE L2 -467 2847 2341 4368 171 55 39 chr11 8576787 8577726 -140205746 - LTR13 LTR ERVK 0 954 1 662 285 163 30 chr11 8577726 8577808 -140205664 - L2 LINE L2 -973 2341 2271 383 289 161 12 chr11 8578256 8578598 -140204874 - L3 LINE CR1 -42 1535 1143 2375 115 42 0 chr11 8580497 8580854 -140202618 - L1PB3 LINE L1 0 6154 5783 542 299 43 9 chr11 8581153 8581364 -140202108 + MIR SINE MIR 1 218 -44 338 87 0 0 chr11 8581506 8581552 -140201920 - AluJo SINE Alu -10 292 247 1542 151 0 20 chr11 8581618 8581863 -140201609 - AluJo SINE Alu -72 240 1 371 266 65 43 chr11 8581865 8582004 -140201468 - HAL1 LINE L1 -2135 372 231 30 27 0 0 chr11 8582113 8582150 -140201322 + AT_rich Low_complexity Low_complexity 1 37 0 1214 8 0 0 chr11 8582306 8582438 -140201034 - AluYb8 SINE Alu -8 310 179 267 317 35 95 chr11 8582438 8582551 -140200921 - L1MEd LINE L1 -5549 570 452 2193 111 7 13 chr11 8582551 8582849 -140200623 - AluSp SINE Alu -17 296 1 267 317 35 95 chr11 8582849 8583082 -140200390 - L1MEd LINE L1 -5667 452 245 339 319 89 51 chr11 8583748 8584118 -140199354 - LTR67 LTR ERVL -138 419 36 1794 218 14 6 chr11 8584412 8584775 -140198697 - MLT2D LTR ERVL -48 366 1 496 267 247 28 chr11 8585359 8585971 -140197501 - L2 LINE L2 -248 3065 2325 2230 164 3 8 chr11 8586239 8586604 -140196868 + MLT1A1 LTR MaLR 3 365 0 22 0 0 0 chr11 8587368 8587390 -140196082 + AT_rich Low_complexity Low_complexity 1 22 0 1230 285 72 4 chr11 8587656 8588115 -140195357 - L2 LINE L2 0 3313 2824 201 305 0 0 chr11 8589832 8589891 -140193581 - MIR SINE MIR -63 145 87 225 336 74 13 chr11 8589978 8590127 -140193345 - L2 LINE L2 -210 3062 2905 2581 59 0 0 chr11 8590685 8590988 -140192484 - AluY SINE Alu -8 303 1 2212 168 12 22 chr11 8591261 8591661 -140191811 + MSTD LTR MaLR 1 396 0 241 298 116 46 chr11 8592437 8592850 -140190622 - L2 LINE L2 -495 2819 2378 2133 109 7 0 chr11 8594357 8594669 -140188803 - AluSx SINE Alu 0 314 1 198 333 70 0 chr11 8595211 8595325 -140188147 + MIR SINE MIR 22 143 -65 3700 176 66 18 chr11 8595391 8596103 -140187369 - LTR39 LTR ERV1 0 783 38 796 215 25 0 chr11 8596106 8596269 -140187203 - MIR SINE MIR -23 239 73 1560 211 82 26 chr11 8597239 8597692 -140185780 - L1ME LINE L1 -480 5686 5185 2000 146 0 3 chr11 8597692 8597993 -140185479 - AluJb SINE Alu -12 300 1 1560 211 82 26 chr11 8597993 8598217 -140185255 - L1ME LINE L1 -981 5185 4975 296 262 37 19 chr11 8598322 8598429 -140185043 - HAL1b LINE L1 -49 1299 1191 670 83 4 78 chr11 8598533 8598800 -140184672 + AluSc SINE Alu 1 309 0 21 0 0 0 chr11 8598865 8598886 -140184586 + AT_rich Low_complexity Low_complexity 1 21 0 325 287 86 17 chr11 8599667 8599841 -140183631 - L1ME LINE L1 -1227 4919 4734 480 310 139 24 chr11 8599931 8600218 -140183254 - L1ME LINE L1 -1515 4631 4312 345 293 40 30 chr11 8600276 8600474 -140182998 - L1ME LINE L1 -1924 4222 4023 376 338 88 7 chr11 8600497 8600645 -140182827 - L1ME LINE L1 -2275 3871 3712 455 33 16 0 chr11 8601242 8601303 -140182169 + (CA)n Simple_repeat Simple_repeat 2 63 0 312 275 83 25 chr11 8601480 8601600 -140181872 - L1MC4 LINE L1 -1335 6707 6581 265 191 33 40 chr11 8601609 8601761 -140181711 + (CATATA)n Simple_repeat Simple_repeat 2 152 0 358 202 0 101 chr11 8601764 8601863 -140181609 - L1MC4 LINE L1 -1340 6702 6614 353 204 0 112 chr11 8601775 8601873 -140181599 + L1MC4 LINE L1 6617 6703 -1339 * 250 233 17 0 chr11 8601905 8601965 -140181507 + L1M4 LINE L1 2957 3017 -3129 591 222 83 44 chr11 8601970 8602293 -140181179 - MLT1I LTR MaLR -2 407 82 28 0 0 0 chr11 8602441 8602469 -140181003 + AT_rich Low_complexity Low_complexity 1 28 0 3545 96 14 0 chr11 8602537 8603047 -140180425 - Tigger4(Zombi) DNA MER2_type -3 2728 2212 461 195 0 0 chr11 8603052 8603134 -140180338 - Tigger4(Zombi) DNA MER2_type -2649 82 1 26 0 0 0 chr11 8603200 8603226 -140180246 + AT_rich Low_complexity Low_complexity 1 26 0 1671 99 4 0 chr11 8603511 8603744 -140179728 + L1PA11 LINE L1 5939 6172 -2 232 222 0 28 chr11 8603833 8603905 -140179567 + (TA)n Simple_repeat Simple_repeat 2 71 0 43 20 0 0 chr11 8603949 8603999 -140179473 + AT_rich Low_complexity Low_complexity 1 50 0 808 279 150 19 chr11 8605742 8606278 -140177194 + L2 LINE L2 2685 3313 0 207 362 103 0 chr11 8606399 8606515 -140176957 - L2 LINE L2 -6 3266 3139 258 227 61 0 chr11 8606600 8606666 -140176806 - L2 LINE L2 -86 3227 3158 284 315 18 45 chr11 8606678 8606789 -140176683 + MIR SINE MIR 71 178 -84 * 389 274 44 15 chr11 8606774 8606909 -140176563 - MIR3 SINE MIR -38 170 32 480 252 42 8 chr11 8607289 8607408 -140176064 - L2 LINE L2 -11 3302 3180 577 178 68 0 chr11 8607684 8607830 -140175642 + L1MB8 LINE L1 6017 6172 -6 335 254 36 7 chr11 8607830 8607968 -140175504 + L1MC4a LINE L1 4904 5045 -1101 729 312 96 35 chr11 8608135 8608740 -140174732 + L1MC4a LINE L1 5256 5897 -1911 903 176 0 48 chr11 8608893 8609058 -140174414 + FRAM SINE Alu 1 156 -20 502 286 121 57 chr11 8609160 8609598 -140173874 + L2 LINE L2 2567 3029 -243 182 37 37 0 chr11 8610730 8610757 -140172715 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 290 252 99 46 chr11 8611085 8611236 -140172236 + MLT1J2 LTR MaLR 1 159 -291 2137 142 0 3 chr11 8612985 8613294 -140170178 + AluSx SINE Alu 1 308 -4 229 241 102 77 chr11 8613494 8613768 -140169704 + L2 LINE L2 2472 2752 -562 * 630 283 23 39 chr11 8613758 8614020 -140169452 - MIR SINE MIR 0 262 6 1446 260 94 15 chr11 8614055 8614563 -140168909 + L2 LINE L2 2780 3312 -1 238 328 39 8 chr11 8614569 8614697 -140168775 + L2 LINE L2 2919 3050 -222 388 325 33 8 chr11 8615133 8615253 -140168219 - MER91C DNA MER1_type 0 140 18 548 291 35 35 chr11 8615864 8616063 -140167409 - MIR SINE MIR -56 206 8 884 270 103 71 chr11 8617177 8617486 -140165986 - L2 LINE L2 -297 3016 2675 2297 113 7 0 chr11 8617486 8617796 -140165676 + AluSx SINE Alu 1 312 0 884 270 103 71 chr11 8617796 8617973 -140165499 - L2 LINE L2 -638 2675 2505 229 237 158 0 chr11 8618156 8618232 -140165240 - MIR SINE MIR -167 95 8 421 274 103 0 chr11 8618699 8618816 -140164656 - MIR SINE MIR -106 156 28 213 256 122 24 chr11 8618907 8618989 -140164483 + L2 LINE L2 3142 3231 -41 937 227 77 57 chr11 8618996 8619243 -140164229 - MIR SINE MIR -10 252 1 541 311 99 77 chr11 8619280 8619734 -140163738 - L2 LINE L2 -4 3268 2805 441 54 0 0 chr11 8619743 8619799 -140163673 + (CA)n Simple_repeat Simple_repeat 2 57 0 266 210 0 16 chr11 8620584 8620646 -140162826 + C-rich Low_complexity Low_complexity 3 63 0 228 67 0 0 chr11 8620676 8620706 -140162766 + (CTGGGG)n Simple_repeat Simple_repeat 4 33 0 180 111 0 0 chr11 8622004 8622031 -140161441 + (TCCA)n Simple_repeat Simple_repeat 4 30 0 210 329 13 0 chr11 8622055 8622134 -140161338 + (TCCA)n Simple_repeat Simple_repeat 3 82 0 224 264 11 0 chr11 8622145 8622232 -140161240 + (TCCA)n Simple_repeat Simple_repeat 4 91 0 220 213 21 0 chr11 8622335 8622382 -140161090 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 235 140 0 0 chr11 8622457 8622507 -140160965 + LTR66 LTR ERVL 394 443 -167 603 27 0 0 chr11 8625205 8625278 -140158194 + (CA)n Simple_repeat Simple_repeat 2 74 0 385 228 185 0 chr11 8625391 8625483 -140157989 - MER91A DNA MER1_type -86 110 2 237 279 38 0 chr11 8627085 8627164 -140156308 - MER94 DNA DNA -26 108 27 519 281 0 0 chr11 8627292 8627438 -140156034 + L1ME3 LINE L1 5969 6114 -48 181 184 0 53 chr11 8627460 8627498 -140155974 - L2 LINE L2 -68 3204 3169 415 238 48 0 chr11 8627509 8627614 -140155858 + MIR SINE MIR 56 165 -97 186 323 62 0 chr11 8627612 8627677 -140155795 + L2 LINE L2 3141 3209 -63 * 328 327 93 0 chr11 8629531 8629681 -140153791 + MIR SINE MIR 74 237 -25 233 308 191 48 chr11 8630437 8630752 -140152720 + L2 LINE L2 2602 2961 -353 292 311 14 54 chr11 8630829 8630977 -140152495 + MLT1K LTR MaLR 145 286 -302 314 241 0 25 chr11 8631320 8631399 -140152073 + L1ME3A LINE L1 5886 5962 -208 1392 131 9 9 chr11 8631476 8631697 -140151775 - MER1B DNA MER1_type -76 221 1 366 241 82 132 chr11 8631700 8631801 -140151671 + L1ME3A LINE L1 5962 6048 -122 2292 84 0 32 chr11 8631801 8632111 -140151361 - AluY SINE Alu -11 300 1 366 241 82 132 chr11 8632111 8632229 -140151243 + L1ME3A LINE L1 6048 6170 0 1046 147 0 0 chr11 8632368 8632545 -140150927 - AluSg/x SINE Alu 0 310 134 2297 101 3 0 chr11 8632545 8632842 -140150630 - AluSp SINE Alu -14 299 2 312 283 38 0 chr11 8632934 8633040 -140150432 - L1MEd LINE L1 -3563 2566 2457 425 323 44 34 chr11 8633400 8633563 -140149909 - L1MEd LINE L1 -4887 1232 1072 360 64 0 0 chr11 8633563 8633610 -140149862 + (TG)n Simple_repeat Simple_repeat 2 48 0 425 323 44 34 chr11 8633610 8633830 -140149642 - L1MEd LINE L1 -5047 1072 845 205 197 30 15 chr11 8634021 8634087 -140149385 + CT-rich Low_complexity Low_complexity 6 72 0 246 81 0 0 chr11 8637027 8637064 -140146408 + (TGGA)n Simple_repeat Simple_repeat 1 37 0 240 310 121 14 chr11 8637314 8637473 -140145999 + MIR SINE MIR 19 205 -3 210 344 16 24 chr11 8638229 8638354 -140145118 + L2 LINE L2 2248 2371 -943 2252 117 0 0 chr11 8638714 8639013 -140144459 - AluSx SINE Alu -13 299 1 439 229 31 0 chr11 8639609 8639726 -140143746 + MIR SINE MIR 46 164 -54 1946 127 0 0 chr11 8640011 8640270 -140143202 - AluSq SINE Alu -54 259 1 6190 187 21 14 chr11 8640270 8640286 -140143186 - L1P5 LINE L1 -679 5475 5461 4485 101 0 9 chr11 8640286 8640929 -140142543 + L1PA13 LINE L1 5523 6159 -4 6190 187 21 14 chr11 8640929 8641834 -140141638 - L1P5 LINE L1 -693 5461 4537 2543 114 2 53 chr11 8641834 8642003 -140141469 + THE1C LTR MaLR 1 177 -198 2221 82 4 0 chr11 8642003 8642295 -140141177 - AluSp SINE Alu 0 309 17 2543 114 2 53 chr11 8642295 8642519 -140140953 + THE1C LTR MaLR 177 375 0 6190 187 21 14 chr11 8642519 8643225 -140140247 - L1P5 LINE L1 -1617 4537 3837 2251 110 3 3 chr11 8643707 8644007 -140139465 + AluSc SINE Alu 1 300 -9 1459 137 26 72 chr11 8644601 8644908 -140138564 - THE1C LTR MaLR 0 375 83 1169 219 19 107 chr11 8645799 8646209 -140137263 + MLT1A2 LTR MaLR 1 374 0 1100 220 49 20 chr11 8647190 8647494 -140135978 + MLT1H LTR MaLR 51 363 -186 1818 126 61 0 chr11 8648379 8648673 -140134799 + AluJo SINE Alu 1 312 0 830 148 15 11 chr11 8648673 8648943 -140134529 + GA-rich Low_complexity Low_complexity 1 271 0 454 312 158 44 chr11 8648954 8648995 -140134477 - L3 LINE CR1 -203 1374 1339 1564 208 80 49 chr11 8648995 8649447 -140134025 - MLT1C LTR MaLR 0 467 2 454 312 158 44 chr11 8649447 8649950 -140133522 - L3 LINE CR1 -238 1339 768 1737 167 3 7 chr11 8650050 8650344 -140133128 + AluJo SINE Alu 1 293 -19 333 0 0 0 chr11 8651214 8651251 -140132221 + (CA)n Simple_repeat Simple_repeat 2 38 0 441 312 108 52 chr11 8651256 8651487 -140131985 - L1ME4a LINE L1 -40 6081 5838 213 263 9 53 chr11 8652634 8652748 -140130724 + (TG)n Simple_repeat Simple_repeat 2 110 0 722 247 30 12 chr11 8652748 8652914 -140130558 + MIR SINE MIR 52 220 -42 195 269 0 103 chr11 8652938 8653016 -140130456 + L2 LINE L2 2956 3025 -247 212 235 39 69 chr11 8653948 8654050 -140129422 - MIR SINE MIR -71 137 39 352 322 91 77 chr11 8654293 8654579 -140128893 + L2 LINE L2 2982 3271 -1 234 128 0 0 chr11 8654588 8654627 -140128845 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 198 167 167 69 chr11 8655392 8655464 -140128008 + MIR SINE MIR 75 153 -55 753 189 51 0 chr11 8655656 8655831 -140127641 + L1ME3 LINE L1 5647 5830 -332 3747 199 33 21 chr11 8655837 8656695 -140126777 + Tigger6a DNA MER2_type 2 869 -214 1687 167 16 16 chr11 8657302 8657432 -140126040 + AluJo SINE Alu 1 130 -182 288 0 0 0 chr11 8657432 8657464 -140126008 + (CA)n Simple_repeat Simple_repeat 2 33 0 1687 167 16 16 chr11 8657464 8657645 -140125827 + AluJo SINE Alu 129 312 0 905 231 52 0 chr11 8657645 8657870 -140125602 - MIR SINE MIR -6 256 17 319 317 106 0 chr11 8658638 8658761 -140124711 - L2 LINE L2 -1 3271 3136 304 283 151 52 chr11 8658866 8659138 -140124334 - L2 LINE L2 -491 2823 2525 191 414 29 10 chr11 8659142 8659246 -140124226 - MIR SINE MIR 0 262 157 652 271 9 32 chr11 8659248 8659469 -140124003 - LTR33 LTR ERVL -2 519 304 1154 267 41 26 chr11 8660595 8660984 -140122488 - MLT1I LTR MaLR 0 409 15 2632 107 5 29 chr11 8661451 8661835 -140121637 - THE1C LTR MaLR 0 375 1 197 200 0 0 chr11 8662175 8662210 -140121262 + MIR SINE MIR 75 109 -153 557 278 116 6 chr11 8662357 8662530 -140120942 + MIR SINE MIR 70 261 -1 464 210 63 145 chr11 8662857 8663184 -140120288 + LTR16A1 LTR ERVL 169 457 0 438 368 69 26 chr11 8663239 8663470 -140120002 - MIR SINE MIR -14 248 8 22 35 0 0 chr11 8666010 8666039 -140117433 + AT_rich Low_complexity Low_complexity 1 29 0 387 0 0 0 chr11 8667704 8667747 -140115725 + (CA)n Simple_repeat Simple_repeat 1 43 0 423 207 162 0 chr11 8668539 8668650 -140114822 + MER3 DNA MER1_type 77 205 -4 829 290 68 16 chr11 8668838 8669086 -140114386 + MIR SINE MIR 2 262 0 231 36 0 0 chr11 8669090 8669118 -140114354 + (CACCAT)n Simple_repeat Simple_repeat 6 33 0 1592 242 301 11 chr11 8671884 8672631 -140110841 + L1MC4 LINE L1 6948 7911 -131 2499 184 98 45 chr11 8673686 8674279 -140109193 - MLT1E3 LTR MaLR 0 624 1 565 179 8 15 chr11 8676042 8676176 -140107296 + CT-rich Low_complexity Low_complexity 4 136 0 1107 220 43 28 chr11 8676527 8676854 -140106618 - L1ME3 LINE L1 0 6162 5831 521 222 28 49 chr11 8676854 8676998 -140106474 - Tigger6 DNA MER2_type -3 1594 1454 196 254 85 0 chr11 8677723 8677782 -140105690 + MIR SINE MIR 84 147 -61 295 297 70 62 chr11 8677905 8678033 -140105439 + MIR SINE MIR 28 147 -61 347 257 55 9 chr11 8678112 8678221 -140105251 - L2 LINE L2 -1 3312 3199 231 103 0 0 chr11 8679599 8679638 -140103834 + (CAGT)n Simple_repeat Simple_repeat 4 42 0 238 321 37 55 chr11 8679763 8679872 -140103600 - MIR3 SINE MIR -12 196 90 1144 306 50 21 chr11 8680380 8680861 -140102611 - L2 LINE L2 -2 3311 2817 24 0 0 0 chr11 8680893 8680917 -140102555 + GC_rich Low_complexity Low_complexity 1 24 0 194 304 194 44 chr11 8682067 8682294 -140101178 + L2 LINE L2 2985 3245 -27 195 313 104 17 chr11 8682485 8682600 -140100872 + MIR SINE MIR 16 140 -68 1145 172 66 66 chr11 8682616 8682935 -140100537 + MER33 DNA MER1_type 6 324 0 223 271 188 24 chr11 8684573 8684658 -140098814 + MIR SINE MIR 44 142 -66 230 297 0 0 chr11 8686107 8686181 -140097291 - MIR SINE MIR -67 141 68 901 264 17 13 chr11 8687056 8687287 -140096185 - MIR SINE MIR 0 262 31 639 313 42 32 chr11 8687583 8687800 -140095672 - MIR SINE MIR -19 243 25 212 241 0 19 chr11 8687813 8687867 -140095605 + GA-rich Low_complexity Low_complexity 4 56 0 182 65 65 0 chr11 8688000 8688031 -140095441 + GA-rich Low_complexity Low_complexity 3 35 0 205 74 0 0 chr11 8691223 8691250 -140092222 - L2 LINE L2 -15 3257 3231 342 123 0 0 chr11 8691990 8692047 -140091425 + (CA)n Simple_repeat Simple_repeat 2 58 0 388 250 107 0 chr11 8692091 8692203 -140091269 + MER63 DNA MER1_type 1 750 -86 254 274 27 0 chr11 8692530 8692603 -140090869 + L3 LINE CR1 1415 1489 -88 21 36 0 0 chr11 8693093 8693121 -140090351 + AT_rich Low_complexity Low_complexity 1 28 0 1807 157 30 10 chr11 8693121 8693426 -140090046 + AluJo SINE Alu 1 311 -1 828 281 49 20 chr11 8693484 8693730 -140089742 + MIR SINE MIR 2 254 -8 596 254 24 24 chr11 8693756 8693921 -140089551 - MIR SINE MIR -48 214 50 242 208 38 0 chr11 8694531 8694584 -140088888 - MER45 DNA AcHobo 0 1581 1527 * 1290 259 76 81 chr11 8694579 8695170 -140088302 - MER45C DNA AcHobo -320 633 46 230 309 93 32 chr11 8695341 8695587 -140087885 + L2 LINE L2 2823 3083 -189 195 69 0 0 chr11 8695815 8695844 -140087628 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 187 257 17 149 chr11 8695950 8696125 -140087347 - L2 LINE L2 -437 2877 2726 2169 133 9 35 chr11 8696156 8696502 -140086970 - MER1B DNA MER1_type 0 337 1 482 326 100 48 chr11 8697735 8698604 -140084868 + L2 LINE L2 2027 2940 -374 440 310 111 10 chr11 8698613 8699089 -140084383 - L2 LINE L2 -18 3254 2380 501 330 85 13 chr11 8699139 8699375 -140084097 - MIR SINE MIR -5 257 5 23 33 0 0 chr11 8700309 8700339 -140083133 + AT_rich Low_complexity Low_complexity 1 30 0 816 302 65 40 chr11 8700450 8701034 -140082438 - L1M4 LINE L1 -2027 4119 3551 3568 136 14 2 chr11 8701034 8701586 -140081886 - L1MB2 LINE L1 0 6171 5613 816 302 65 40 chr11 8701586 8702249 -140081223 - L1M4 LINE L1 -2595 3551 2841 409 344 21 4 chr11 8702241 8702482 -140080990 - L1M4 LINE L1 -3771 2375 2131 * 351 337 26 0 chr11 8703272 8703462 -140080010 - L1M4 LINE L1 -3782 2364 2170 523 292 54 6 chr11 8703748 8703916 -140079556 - MER91A DNA MER1_type 0 196 21 297 100 0 0 chr11 8705138 8705188 -140078284 + (CA)n Simple_repeat Simple_repeat 2 51 0 23 0 0 0 chr11 8705652 8705675 -140077797 + GC_rich Low_complexity Low_complexity 1 23 0 631 194 82 47 chr11 8706455 8706625 -140076847 + MER69A DNA AcHobo 2 177 0 483 248 9 9 chr11 8706864 8706973 -140076499 - MER81 DNA DNA 0 114 6 507 294 39 10 chr11 8708907 8709111 -140074361 - MIR SINE MIR -33 229 20 2181 113 0 3 chr11 8709275 8709585 -140073887 + AluSg SINE Alu 1 309 -1 521 142 25 67 chr11 8709729 8709849 -140073623 + L2 LINE L2 3193 3307 -6 186 133 0 0 chr11 8710572 8710602 -140072870 + (TCTCCC)n Simple_repeat Simple_repeat 4 33 0 29 47 0 0 chr11 8710983 8711026 -140072446 + GC_rich Low_complexity Low_complexity 1 43 0 24 53 0 0 chr11 8711086 8711124 -140072348 + GC_rich Low_complexity Low_complexity 1 38 0 192 167 0 0 chr11 8712108 8712138 -140071334 - MIR SINE MIR -152 110 81 201 355 32 21 chr11 8716157 8716250 -140067222 + MIR SINE MIR 111 204 -58 957 222 53 0 chr11 8717010 8717199 -140066273 - MER63A DNA MER1_type -11 199 1 286 141 306 0 chr11 8717795 8717880 -140065592 + MIR SINE MIR 37 147 -61 2625 26 0 0 chr11 8718070 8718373 -140065099 + AluY SINE Alu 1 303 -8 1653 241 109 47 chr11 8718395 8718680 -140064792 - MLT1H LTR MaLR 0 549 283 1707 167 21 0 chr11 8718680 8718961 -140064511 - AluJb SINE Alu -19 293 7 1653 241 109 47 chr11 8718961 8719190 -140064282 - MLT1H LTR MaLR -266 283 3 820 274 15 0 chr11 8719190 8719391 -140064081 - MIR SINE MIR -51 211 8 1579 224 151 48 chr11 8721248 8721784 -140061688 - MLT1E LTR MaLR 0 593 3 315 283 29 27 chr11 8721903 8722048 -140061424 - MIR SINE MIR -62 146 54 697 166 0 11 chr11 8722148 8722329 -140061143 + (CA)n Simple_repeat Simple_repeat 2 180 0 466 251 17 11 chr11 8722340 8722519 -140060953 + (CA)n Simple_repeat Simple_repeat 1 180 0 449 259 0 9 chr11 8722866 8722982 -140060490 + MIR SINE MIR 24 138 -70 188 280 20 0 chr11 8723320 8723370 -140060102 - MIR SINE MIR -104 158 108 452 119 0 83 chr11 8724562 8724646 -140058826 - L1PA16 LINE L1 -33 6133 6057 289 27 0 0 chr11 8724647 8724684 -140058788 - L1PA16 LINE L1 -185 5981 5945 271 391 8 16 chr11 8724685 8724813 -140058659 - L2 LINE L2 -556 2758 2632 308 252 36 54 chr11 8726026 8726137 -140057335 + MIR SINE MIR 16 124 -138 3361 151 23 11 chr11 8727469 8728011 -140055461 - L1MB7 LINE L1 -8 6176 5625 2755 122 39 0 chr11 8728011 8728421 -140055051 + MSTB LTR MaLR 1 426 0 3361 151 23 11 chr11 8728421 8728447 -140055025 - L1MB7 LINE L1 -559 5625 5601 188 280 43 43 chr11 8728584 8728677 -140054795 + MIR SINE MIR 88 180 -82 515 314 42 11 chr11 8728712 8728903 -140054569 - MIR SINE MIR -50 212 16 457 376 44 0 chr11 8729005 8729186 -140054286 + MIR SINE MIR 70 258 -4 323 354 23 8 chr11 8730505 8730635 -140052837 - L3 LINE CR1 -505 1072 941 521 294 213 41 chr11 8732277 8733105 -140050367 - L2 LINE L2 -59 3254 2311 2365 154 3 8 chr11 8733362 8733726 -140049746 + MLT1A1 LTR MaLR 4 365 0 194 139 0 28 chr11 8734246 8734282 -140049190 + L2 LINE L2 3217 3251 -21 674 277 55 17 chr11 8735015 8735253 -140048219 + MIR SINE MIR 15 261 -1 2050 209 45 54 chr11 8735299 8735489 -140047983 - L1ME3 LINE L1 0 6162 5972 2478 60 0 0 chr11 8735489 8735791 -140047681 - AluY SINE Alu -5 306 5 2050 209 45 54 chr11 8735791 8736156 -140047316 - L1ME3 LINE L1 -190 5972 5612 377 308 258 0 chr11 8736188 8736370 -140047102 - MIR SINE MIR -27 235 7 366 194 74 74 chr11 8737361 8737469 -140046003 - L2 LINE L2 -5 3308 3201 194 368 0 0 chr11 8737628 8737704 -140045768 + MIR SINE MIR 2 77 -185 1578 143 3 52 chr11 8737704 8737991 -140045481 + AluJb SINE Alu 26 298 -14 246 328 128 8 chr11 8738328 8738453 -140045019 - MIR SINE MIR -45 217 78 2054 196 54 41 chr11 8738454 8738989 -140044483 + L1MC4 LINE L1 7501 8042 0 255 350 55 21 chr11 8739076 8739295 -140044177 - MIR SINE MIR -29 233 6 205 313 0 10 chr11 8740421 8740517 -140042955 + GA-rich Low_complexity Low_complexity 1 95 0 381 260 142 18 chr11 8742103 8742272 -140041200 + MIR3 SINE MIR 12 201 -7 185 293 85 0 chr11 8744445 8744527 -140038945 + MIR SINE MIR 76 164 -98 1857 149 7 7 chr11 8744996 8745292 -140038180 + AluJb SINE Alu 1 296 -16 219 300 0 0 chr11 8745928 8745998 -140037474 + L3 LINE CR1 1399 1468 -109 236 274 110 48 chr11 8746030 8746176 -140037296 - MIR SINE MIR -32 230 76 838 125 8 23 chr11 8746220 8746348 -140037124 + AluSq/x SINE Alu 6 131 -182 2250 86 0 17 chr11 8746969 8747271 -140036201 + AluSc SINE Alu 1 297 -12 350 294 10 93 chr11 8747522 8747716 -140035756 + MIR3 SINE MIR 1 178 -30 2133 123 0 0 chr11 8748476 8748776 -140034696 - AluSx SINE Alu -12 300 1 780 339 62 21 chr11 8749032 8749285 -140034187 + L2 LINE L2 78 358 -2956 2299 97 3 0 chr11 8749285 8749593 -140033879 - AluSc SINE Alu 0 309 1 780 339 62 21 chr11 8749593 8749775 -140033697 + L2 LINE L2 358 531 -2783 405 89 18 0 chr11 8749779 8749835 -140033637 + Alu SINE Alu 2 58 -260 584 199 60 12 chr11 8749977 8750143 -140033329 + MIR SINE MIR 84 257 -5 365 276 31 0 chr11 8750174 8750272 -140033200 - MIR SINE MIR -82 180 80 288 287 17 40 chr11 8751047 8751206 -140032266 + (TATATG)n Simple_repeat Simple_repeat 1 157 -13 1978 85 6 82 chr11 8751206 8751523 -140031949 - AluSx SINE Alu -19 293 1 288 287 17 40 chr11 8751523 8751537 -140031935 + (TATATG)n Simple_repeat Simple_repeat 157 170 0 2160 90 30 10 chr11 8752303 8752604 -140030868 - AluSg1 SINE Alu -2 307 1 215 231 0 19 chr11 8753141 8753193 -140030279 + (CCTG)n Simple_repeat Simple_repeat 3 53 0 188 214 0 54 chr11 8754045 8754101 -140029371 - L2 LINE L2 -66 3206 3154 234 277 53 21 chr11 8754421 8754515 -140028957 + L2 LINE L2 3137 3233 -39 210 35 0 105 chr11 8754649 8754706 -140028766 + (CCCCAG)n Simple_repeat Simple_repeat 1 51 0 231 36 0 0 chr11 8754761 8754789 -140028683 + (GGCTG)n Simple_repeat Simple_repeat 5 32 0 345 257 7 44 chr11 8757409 8757545 -140025927 + GA-rich Low_complexity Low_complexity 4 134 0 520 312 28 42 chr11 8757607 8757822 -140025650 + MIR SINE MIR 2 213 -49 302 264 85 12 chr11 8758128 8758267 -140025205 - MIR SINE MIR -52 156 2 310 310 38 32 chr11 8758813 8758971 -140024501 - L2 LINE L2 -35 3278 3120 300 258 153 0 chr11 8759029 8759153 -140024319 - MIR3 SINE MIR -37 171 29 524 314 0 0 chr11 8759724 8759899 -140023573 + (CGAGG)n Simple_repeat Simple_repeat 5 179 0 189 355 187 16 chr11 8763321 8763572 -140019900 - L3 LINE CR1 -926 651 358 275 260 0 0 chr11 8763573 8763646 -140019826 + (TCCA)n Simple_repeat Simple_repeat 1 73 0 229 253 26 148 chr11 8763684 8763913 -140019559 - L2 LINE L2 -74 3198 2998 1306 177 56 16 chr11 8764183 8764432 -140019040 + AluJo SINE Alu 1 259 -53 480 292 153 19 chr11 8765371 8765587 -140017885 + MLT1L LTR MaLR 371 615 0 281 317 8 8 chr11 8766387 8766510 -140016962 + CT-rich Low_complexity Low_complexity 5 127 0 1555 110 0 31 chr11 8766982 8767209 -140016263 + L1PA8A LINE L1 5912 6131 0 1700 155 0 14 chr11 8767325 8767602 -140015870 + AluJo SINE Alu 1 273 -39 207 0 0 0 chr11 8767682 8767689 -140015783 + (TC)n Simple_repeat Simple_repeat 1 30 0 207 0 0 0 chr11 8767689 8767712 -140015760 + (TC)n Simple_repeat Simple_repeat 2 24 0 215 267 43 60 chr11 8767734 8767850 -140015622 - MIR SINE MIR -68 140 27 241 303 56 0 chr11 8768215 8768304 -140015168 + MIR3 SINE MIR 82 175 -33 293 341 48 3 chr11 8768651 8768859 -140014613 + L3 LINE CR1 964 1233 -344 473 299 141 21 chr11 8768873 8769006 -140014466 + MIR SINE MIR 1 117 -145 1889 106 0 72 chr11 8769006 8769327 -140014145 + AluY SINE Alu 1 298 -13 473 299 141 21 chr11 8769327 8769427 -140014045 + MIR SINE MIR 117 262 0 235 260 208 19 chr11 8769440 8769594 -140013878 + L3 LINE CR1 1293 1475 -102 611 211 8 0 chr11 8769655 8769778 -140013694 - L1MA8 LINE L1 -2 6289 6166 775 228 17 22 chr11 8771628 8771808 -140011664 + MER5A DNA MER1_type 4 182 -7 1690 155 11 14 chr11 8772123 8772407 -140011065 - AluJo SINE Alu -16 296 14 211 224 0 35 chr11 8772526 8772584 -140010888 + GA-rich Low_complexity Low_complexity 4 59 0 271 266 13 0 chr11 8775485 8775564 -140007908 + MIR3 SINE MIR 77 156 -52 374 264 119 13 chr11 8776287 8776446 -140007026 - L1MCa LINE L1 -4333 2093 1918 28 29 0 0 chr11 8776446 8776481 -140006991 + AT_rich Low_complexity Low_complexity 1 35 0 2672 20 0 0 chr11 8776577 8776882 -140006590 + AluY SINE Alu 1 305 -6 538 243 76 43 chr11 8777218 8777269 -140006203 - MIR SINE MIR -12 250 202 426 205 0 0 chr11 8777269 8777347 -140006125 - MER116 DNA Mariner -2 78 1 538 243 76 43 chr11 8777347 8777480 -140005992 - MIR SINE MIR -60 202 60 23 0 0 0 chr11 8778353 8778376 -140005096 + AT_rich Low_complexity Low_complexity 1 23 0 199 319 94 43 chr11 8779015 8779212 -140004260 - MIR SINE MIR -29 233 30 295 185 0 0 chr11 8779447 8779501 -140003971 - L2 LINE L2 -2 3270 3217 1060 261 62 73 chr11 8781490 8782038 -140001434 + MLT1H LTR MaLR 8 549 0 506 252 20 54 chr11 8782138 8782285 -140001187 - MER91A DNA MER1_type -41 155 14 468 313 33 0 chr11 8783989 8784139 -139999333 - MIR SINE MIR -87 175 21 219 167 0 0 chr11 8785505 8785547 -139997925 + (TG)n Simple_repeat Simple_repeat 2 43 0 264 241 23 69 chr11 8785597 8785621 -139997851 - MIR3 SINE MIR -15 193 169 2278 124 34 8 chr11 8785621 8785976 -139997496 - THE1B LTR MaLR 0 364 1 264 241 23 69 chr11 8785976 8786038 -139997434 - MIR3 SINE MIR -39 169 111 296 219 47 0 chr11 8786092 8786156 -139997316 - MIR3 SINE MIR -30 178 112 506 143 0 12 chr11 8986338 8986422 -139797050 - AluJ/FLAM SINE Alu -228 84 2 2185 93 0 4 chr11 8986486 8986766 -139796706 + AluSx SINE Alu 20 298 -14 21 36 0 0 chr11 8988500 8988528 -139794944 + AT_rich Low_complexity Low_complexity 1 28 0 1115 126 0 13 chr11 8988599 8988758 -139794714 + AluJo SINE Alu 125 281 -31 33 0 8 0 chr11 8988758 8988836 -139794636 + AT_rich Low_complexity Low_complexity 1 33 0 26 30 0 0 chr11 8988965 8988998 -139794474 + AT_rich Low_complexity Low_complexity 1 33 0 1885 149 13 3 chr11 8989531 8989832 -139793640 + AluJb SINE Alu 1 304 -8 333 282 110 23 chr11 8990851 8991086 -139792386 - L1MC/D LINE L1 -456 5665 5504 280 344 0 0 chr11 8991601 8991694 -139791778 + MER5B DNA MER1_type 24 116 -62 1784 136 63 14 chr11 8991711 8991997 -139791475 - AluSx SINE Alu -12 300 1 1739 165 7 34 chr11 8992346 8992643 -139790829 + AluJo SINE Alu 1 289 -23 2264 107 0 3 chr11 8992646 8992944 -139790528 + AluSx SINE Alu 1 297 -15 261 0 0 0 chr11 8992945 8992974 -139790498 + (TA)n Simple_repeat Simple_repeat 1 29 0 2286 95 0 0 chr11 8993273 8993584 -139789888 + AluSx SINE Alu 1 311 0 1269 113 0 11 chr11 8993588 8993774 -139789698 + AluSg/x SINE Alu 129 312 0 2258 74 14 7 chr11 8994656 8994941 -139788531 + AluSq SINE Alu 1 287 -26 240 35 0 0 chr11 8994944 8994973 -139788499 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 2077 152 0 0 chr11 8995063 8995366 -139788106 - AluSx SINE Alu -9 303 1 1999 132 16 13 chr11 8995743 8996054 -139787418 + AluSq SINE Alu 1 312 -1 318 50 0 0 chr11 8996189 8996229 -139787243 + (TG)n Simple_repeat Simple_repeat 1 40 0 299 328 51 69 chr11 8997279 8997611 -139785861 + L2 LINE L2 2925 3250 -22 1768 150 27 14 chr11 8997788 8998081 -139785391 + AluJb SINE Alu 11 307 -5 1985 149 0 0 chr11 8998266 8998570 -139784902 + AluJo SINE Alu 1 304 0 2269 107 0 0 chr11 8998636 8998925 -139784547 - AluSg SINE Alu -21 289 1 3060 141 29 72 chr11 8999333 8999382 -139784090 + MER41D LTR ERV1 1 51 -506 2127 97 19 55 chr11 8999382 8999692 -139783780 - AluSx SINE Alu -13 299 1 3060 141 29 72 chr11 8999692 8999870 -139783602 + MER41D LTR ERV1 51 235 -322 1993 138 13 7 chr11 8999870 9000175 -139783297 + AluJo SINE Alu 1 307 -5 3060 141 29 72 chr11 9000175 9000402 -139783070 + MER41D LTR ERV1 235 428 -129 2222 112 3 3 chr11 9000402 9000698 -139782774 - AluSx SINE Alu -16 296 1 3060 141 29 72 chr11 9000698 9000823 -139782649 + MER41D LTR ERV1 428 557 0 412 224 213 11 chr11 9000874 9001048 -139782424 - MLT1K LTR MaLR 0 588 380 189 0 0 0 chr11 9001295 9001316 -139782156 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1328 154 33 9 chr11 9001330 9001544 -139781928 - AluJb SINE Alu -30 282 64 2291 89 3 3 chr11 9001544 9001836 -139781636 - AluSp SINE Alu -21 292 1 1914 124 4 0 chr11 9002075 9002334 -139781138 - AluSq SINE Alu -53 260 1 237 277 128 69 chr11 9002599 9002787 -139780685 + MIR SINE MIR 37 235 -27 1823 163 3 3 chr11 9002806 9003112 -139780360 + AluJb SINE Alu 1 306 0 214 304 132 25 chr11 9003134 9003460 -139780012 + L2 LINE L2 1728 2088 -1226 3356 142 2 31 chr11 9003481 9004022 -139779450 + MER1A DNA MER1_type 1 525 -2 218 341 57 0 chr11 9004089 9004177 -139779295 + MIR SINE MIR 48 140 -122 2234 116 0 6 chr11 9004238 9004549 -139778923 + AluSg SINE Alu 1 309 -1 2436 84 3 0 chr11 9005528 9005838 -139777634 - AluSp SINE Alu 0 313 3 2334 106 0 0 chr11 9005839 9006140 -139777332 - AluSg1 SINE Alu -8 301 1 384 77 0 0 chr11 9007267 9007319 -139776153 + (TG)n Simple_repeat Simple_repeat 1 52 0 2180 98 10 3 chr11 9007440 9007736 -139775736 - AluSx SINE Alu -13 299 2 2271 111 3 0 chr11 9007739 9008036 -139775436 - AluSg SINE Alu -12 298 1 2275 108 3 3 chr11 9008206 9008511 -139774961 + AluSg SINE Alu 2 306 -4 350 262 62 0 chr11 9008652 9008797 -139774675 + L1MC5 LINE L1 7311 7464 -497 272 237 113 41 chr11 9008830 9008927 -139774545 + L1MC4 LINE L1 7634 7737 -305 874 211 18 0 chr11 9009023 9009194 -139774278 + AluSg/x SINE Alu 113 286 -24 1588 190 6 25 chr11 9009828 9010154 -139773318 - 7SLRNA srpRNA srpRNA 0 320 1 1008 238 114 65 chr11 9010207 9010304 -139773168 - L1MC4a LINE L1 -1944 5864 5773 2149 105 23 10 chr11 9010304 9010609 -139772863 + AluSg SINE Alu 1 309 -1 1008 238 114 65 chr11 9010609 9010800 -139772672 - L1MC4a LINE L1 -2035 5773 5593 306 0 0 0 chr11 9010800 9010834 -139772638 + (CA)n Simple_repeat Simple_repeat 2 35 0 1008 238 114 65 chr11 9010834 9010990 -139772482 - L1MC4a LINE L1 -2215 5593 5397 1989 86 4 0 chr11 9011898 9012190 -139771282 + AluSg SINE Alu 37 329 0 562 192 0 0 chr11 9012940 9013039 -139770433 - U13 snRNA snRNA -2 102 4 191 261 11 57 chr11 9014766 9014854 -139768618 - L3 LINE CR1 -852 725 642 36 53 0 0 chr11 9016496 9016553 -139766919 + GC_rich Low_complexity Low_complexity 1 57 0 21 0 0 0 chr11 9016653 9016674 -139766798 + GC_rich Low_complexity Low_complexity 1 21 0 35 78 0 0 chr11 9016872 9016949 -139766523 + GC_rich Low_complexity Low_complexity 1 77 0 237 65 0 0 chr11 9017004 9017035 -139766437 + (TCC)n Simple_repeat Simple_repeat 2 32 0 24 32 0 0 chr11 9017080 9017111 -139766361 + GC_rich Low_complexity Low_complexity 1 31 0 33 0 0 0 chr11 9017603 9017636 -139765836 + GC_rich Low_complexity Low_complexity 1 33 0 2266 98 3 22 chr11 9018359 9018675 -139764797 - AluSx SINE Alu -2 310 1 1933 92 32 51 chr11 9018730 9019044 -139764428 - AluSx SINE Alu -4 308 1 1737 139 7 36 chr11 9019655 9019956 -139763516 - AluJb SINE Alu -10 302 11 1875 167 3 10 chr11 9020497 9020796 -139762676 + AluJb SINE Alu 4 300 -12 2035 153 3 0 chr11 9021197 9021498 -139761974 - AluJb SINE Alu -10 302 1 304 293 151 46 chr11 9021525 9021764 -139761708 + L2 LINE L2 3009 3272 0 2579 53 0 0 chr11 9022914 9023217 -139760255 - AluY SINE Alu -8 303 1 1885 147 17 3 chr11 9023293 9023586 -139759886 + AluJb SINE Alu 1 297 -15 21 0 0 0 chr11 9023822 9023843 -139759629 + AT_rich Low_complexity Low_complexity 1 21 0 309 0 0 0 chr11 9024473 9024509 -139758963 - MER11C LTR ERVK -1035 36 1 378 254 152 0 chr11 9025250 9025388 -139758084 - MIR SINE MIR -10 252 94 35 0 0 0 chr11 9025438 9025473 -139757999 + AT_rich Low_complexity Low_complexity 1 35 0 1748 146 46 30 chr11 9025501 9025803 -139757669 - AluJo SINE Alu -5 307 1 414 271 33 33 chr11 9026120 9026271 -139757201 - L2 LINE L2 -193 3120 2970 2077 148 0 0 chr11 9026425 9026723 -139756749 + AluSx SINE Alu 1 298 -14 2069 120 7 13 chr11 9026842 9027141 -139756331 + AluSx SINE Alu 1 297 -15 9501 125 38 66 chr11 9027159 9028274 -139755198 + L1M1 LINE L1 22 1167 -6398 1924 168 13 0 chr11 9028274 9028577 -139754895 + AluSx SINE Alu 1 307 -5 9501 125 38 66 chr11 9028577 9029877 -139753595 + L1M1 LINE L1 1167 3044 -4521 1305 173 35 35 chr11 9029877 9030137 -139753335 + AluJo SINE Alu 45 304 -8 9621 146 23 39 chr11 9030137 9030283 -139753189 + L1M1 LINE L1 3038 3185 -4380 2190 113 0 0 chr11 9030283 9030607 -139752865 + AluSg SINE Alu 1 324 0 9621 146 23 39 chr11 9030607 9031213 -139752259 + L1M1 LINE L1 3185 3800 -3765 2430 93 0 0 chr11 9031213 9031513 -139751959 + AluSx SINE Alu 1 300 -12 9621 146 23 39 chr11 9031513 9032176 -139751296 + L1M1 LINE L1 3800 4473 -3092 1782 164 4 11 chr11 9032176 9032486 -139750986 + AluSx SINE Alu 3 310 0 9621 146 23 39 chr11 9032486 9032659 -139750813 + L1M1 LINE L1 4473 4647 -2918 2321 70 40 7 chr11 9032659 9032960 -139750512 + AluY SINE Alu 1 311 0 9621 146 23 39 chr11 9032960 9033518 -139749954 + L1M1 LINE L1 4647 5213 -2352 9412 96 8 21 chr11 9033518 9034821 -139748651 - HSMAR1 DNA Mariner 0 1287 3 9621 146 23 39 chr11 9034821 9035077 -139748395 + L1M1 LINE L1 5213 5472 -2093 2287 108 0 7 chr11 9035077 9035382 -139748090 + AluSq SINE Alu 1 303 -10 9621 146 23 39 chr11 9035382 9035716 -139747756 + L1M1 LINE L1 5472 5742 -1823 2260 119 0 0 chr11 9035800 9036094 -139747378 + AluSg SINE Alu 1 294 -16 1183 110 0 0 chr11 9036094 9036258 -139747214 + L1MA2 LINE L1 6141 6304 0 21 36 0 0 chr11 9036258 9036286 -139747186 + AT_rich Low_complexity Low_complexity 1 28 0 2296 109 3 0 chr11 9036868 9037172 -139746300 - AluSx SINE Alu -7 305 1 2432 46 0 3 chr11 9037417 9037733 -139745739 - AluY SINE Alu 0 315 1 359 210 76 59 chr11 9037818 9037937 -139745535 - L1M4 LINE L1 -1964 4182 4062 2205 87 17 3 chr11 9037958 9038247 -139745225 + AluSx SINE Alu 1 293 -19 4207 139 70 3 chr11 9038248 9038922 -139744550 - Tigger1 DNA MER2_type -1655 763 45 2046 155 0 3 chr11 9038922 9039231 -139744241 + AluSx SINE Alu 1 308 -4 327 154 0 0 chr11 9039270 9039322 -139744150 + Tigger7 DNA MER2_type 5 56 -283 296 164 36 0 chr11 9039343 9039398 -139744074 - Tigger1 DNA MER2_type -2361 57 1 32 44 0 29 chr11 9039419 9039470 -139744002 + AT_rich Low_complexity Low_complexity 1 51 -15 2237 104 3 0 chr11 9039470 9039757 -139743715 - AluSx SINE Alu -24 288 1 32 44 0 29 chr11 9039757 9039773 -139743699 + AT_rich Low_complexity Low_complexity 51 66 0 266 254 62 110 chr11 9040050 9040324 -139743148 - L1P LINE L1 -2705 3441 3155 2519 64 3 0 chr11 9040324 9040620 -139742852 - AluSg SINE Alu -13 297 1 1713 190 7 0 chr11 9040627 9040917 -139742555 - AluJo SINE Alu -20 292 1 266 254 62 110 chr11 9040917 9041134 -139742338 - L1P LINE L1 -2997 3149 2966 907 217 211 29 chr11 9041174 9041290 -139742182 - L1ME3A LINE L1 0 6170 6076 634 201 107 53 chr11 9041290 9041370 -139742102 - MER45A DNA AcHobo -1403 178 104 2441 71 0 0 chr11 9041370 9041674 -139741798 + AluSx SINE Alu 1 304 0 634 201 107 53 chr11 9041674 9041761 -139741711 - MER45A DNA AcHobo -1477 104 1 907 217 211 29 chr11 9041761 9041957 -139741515 - L1ME3A LINE L1 -94 6076 5801 1934 165 0 0 chr11 9041969 9042266 -139741206 + AluSx SINE Alu 1 297 -15 44036 33 21 1 chr11 9042329 9048359 -139735113 + L1PA3 LINE L1 3 6155 0 292 47 0 0 chr11 9048923 9048966 -139734506 + AluY SINE Alu 259 301 0 22 56 0 0 chr11 9049146 9049182 -139734290 + AT_rich Low_complexity Low_complexity 1 36 0 1883 154 11 0 chr11 9049197 9049482 -139733990 + AluJb SINE Alu 1 288 -24 1378 136 0 0 chr11 9049482 9049680 -139733792 + AluSg/x SINE Alu 107 304 -6 878 178 6 30 chr11 9049683 9049852 -139733620 + AluJo/FRAM SINE Alu 137 301 -1 408 141 0 16 chr11 9049856 9049920 -139733552 - MLT1D LTR MaLR -442 63 1 260 179 179 15 chr11 9050001 9050068 -139733404 - L1ME3A LINE L1 -2029 5779 5702 1572 161 3 49 chr11 9050143 9050447 -139733025 + AluJb SINE Alu 1 290 -22 1566 150 135 0 chr11 9050460 9050726 -139732746 + AluSx SINE Alu 1 302 0 781 226 52 0 chr11 9050743 9050898 -139732574 + FRAM SINE Alu 4 166 0 272 309 49 0 chr11 9050901 9050982 -139732490 - L1ME3A LINE L1 -2289 5519 5435 2606 67 0 3 chr11 9050988 9051300 -139732172 - AluY SINE Alu 0 311 1 353 196 20 20 chr11 9051334 9051436 -139732036 - L1ME3A LINE L1 -2360 5448 5347 1986 116 0 0 chr11 9051490 9051748 -139731724 + AluSx SINE Alu 1 258 -54 195 42 0 0 chr11 9051807 9051831 -139731641 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 2452 78 3 3 chr11 9052396 9052704 -139730768 + AluSq SINE Alu 1 308 -5 2235 104 0 3 chr11 9052704 9053001 -139730471 + AluSx SINE Alu 1 296 -16 180 0 0 0 chr11 9053810 9053830 -139729642 + (T)n Simple_repeat Simple_repeat 1 20 0 1140 188 76 144 chr11 9054083 9054240 -139729232 - MER4C LTR ERV1 0 465 299 2692 88 119 12 chr11 9054240 9054660 -139728812 - MER4C LTR ERV1 0 465 1 1140 188 76 144 chr11 9054660 9055001 -139728471 - MER4C LTR ERV1 -166 299 1 496 194 39 10 chr11 9055383 9055486 -139727986 - MER45B DNA AcHobo 0 1040 935 1163 108 84 25 chr11 9055486 9055559 -139727913 + L1MB3 LINE L1 5887 5954 -229 2014 100 0 81 chr11 9055559 9055900 -139727572 + AluSx SINE Alu 1 316 0 1163 108 84 25 chr11 9055900 9056028 -139727444 + L1MB3 LINE L1 5954 6101 -82 1107 162 0 0 chr11 9056028 9056201 -139727271 + MER2 DNA MER2_type 1 173 -172 915 132 0 0 chr11 9056296 9056425 -139727047 - FLAM_C SINE Alu -9 134 6 450 138 0 0 chr11 9056429 9056494 -139726978 + MER2 DNA MER2_type 271 335 -10 292 124 106 4 chr11 9056515 9056587 -139726885 + L1MB3 LINE L1 6100 6180 0 999 176 50 31 chr11 9056597 9056681 -139726791 - MER45B DNA AcHobo -643 938 857 2289 100 3 3 chr11 9056681 9056981 -139726491 + AluSx SINE Alu 1 300 -12 999 176 50 31 chr11 9056981 9057118 -139726354 - MER45B DNA AcHobo -724 857 713 1098 265 87 47 chr11 9057308 9057748 -139725724 - MER45C DNA AcHobo -347 606 101 1860 148 45 0 chr11 9057748 9058039 -139725433 + AluJb SINE Alu 1 304 -8 1098 265 87 47 chr11 9058039 9058145 -139725327 - MER45C DNA AcHobo -852 101 1 393 270 35 47 chr11 9059843 9060043 -139723429 + MIR SINE MIR 17 213 -49 23 54 0 0 chr11 9060148 9060185 -139723287 + AT_rich Low_complexity Low_complexity 1 37 0 1048 141 0 40 chr11 9061422 9061561 -139721911 + AluJo SINE Alu 1 133 -179 2262 70 3 33 chr11 9061561 9061863 -139721609 + AluY SINE Alu 1 293 -18 1048 141 0 40 chr11 9061863 9061900 -139721572 + AluJo SINE Alu 133 170 -142 823 138 0 0 chr11 9061954 9062070 -139721402 + FLAM_C SINE Alu 3 118 -15 26 50 0 0 chr11 9062070 9062110 -139721362 + AT_rich Low_complexity Low_complexity 1 40 0 1567 114 5 0 chr11 9062330 9062541 -139720931 - AluJb SINE Alu -20 292 81 1690 166 7 14 chr11 9062544 9062834 -139720638 - AluJb SINE Alu -24 288 1 634 246 66 44 chr11 9064269 9064497 -139718975 + L1ME LINE L1 1 233 -5837 255 327 18 0 chr11 9064517 9064627 -139718845 + L1ME LINE L1 290 401 -5669 2336 93 7 0 chr11 9064628 9064929 -139718543 - AluSx SINE Alu -9 303 1 24 0 0 0 chr11 9064931 9064955 -139718517 + AT_rich Low_complexity Low_complexity 1 24 0 2565 31 0 3 chr11 9064955 9065243 -139718229 - AluY SINE Alu -24 287 1 431 272 0 0 chr11 9065505 9065619 -139717853 + L1ME LINE L1 526 639 -5431 1488 88 0 34 chr11 9065626 9065830 -139717642 + AluSq SINE Alu 1 197 -116 2381 89 3 0 chr11 9065901 9066204 -139717268 + AluSq SINE Alu 1 304 -9 21 0 0 0 chr11 9066283 9066304 -139717168 + AT_rich Low_complexity Low_complexity 1 21 0 469 217 0 0 chr11 9066306 9066398 -139717074 + FLAM_A SINE Alu 2 93 -49 413 125 0 0 chr11 9066415 9066471 -139717001 - AluS SINE Alu -260 58 3 360 205 197 0 chr11 9066474 9066601 -139716871 - L1M4 LINE L1 -3016 3130 2979 2143 123 3 3 chr11 9066610 9066912 -139716560 - AluSx SINE Alu -10 302 1 1030 244 32 86 chr11 9066914 9067096 -139716376 + L1M4 LINE L1 3314 3504 -2642 180 0 0 0 chr11 9067096 9067116 -139716356 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1030 244 32 86 chr11 9067116 9067399 -139716073 + L1M4 LINE L1 3504 3750 -2396 1659 158 25 19 chr11 9067399 9067715 -139715757 + L1MC1 LINE L1 6016 6333 0 1030 244 32 86 chr11 9067715 9067773 -139715699 + L1M4 LINE L1 3750 3810 -2336 446 168 69 20 chr11 9067784 9067885 -139715587 + L1ME2 LINE L1 5419 5524 -638 469 110 27 0 chr11 9067885 9067958 -139715514 - AluSg SINE Alu -6 306 232 1061 198 37 8 chr11 9068066 9068309 -139715163 - AluSg SINE Alu -60 250 1 1320 176 18 116 chr11 9068311 9068513 -139714959 - AluJo SINE Alu -5 297 138 2182 89 3 0 chr11 9068513 9068795 -139714677 + AluSx SINE Alu 30 312 0 1320 176 18 116 chr11 9068795 9068921 -139714551 - AluJo SINE Alu -164 138 1 2004 205 45 2 chr11 9068959 9069379 -139714093 + L1ME2 LINE L1 5513 5950 -214 596 87 0 12 chr11 9069379 9069609 -139713863 + AluSx SINE Alu 1 296 -16 908 191 70 23 chr11 9069610 9069825 -139713647 + L1ME2 LINE L1 5940 6164 0 2372 76 0 13 chr11 9070089 9070393 -139713079 - AluSq SINE Alu -13 300 1 430 86 0 0 chr11 9070393 9070451 -139713021 - L1M LINE L1 -755 5423 5366 * 435 173 21 21 chr11 9070427 9070522 -139712950 - L1ME LINE L1 -589 5575 5481 763 217 50 75 chr11 9070556 9071075 -139712397 - L1ME LINE L1 -663 5501 5000 1367 213 167 35 chr11 9071148 9071603 -139711869 + L1MC4a LINE L1 5384 5898 -1910 1398 108 159 47 chr11 9071634 9071866 -139711606 + AluJb SINE Alu 1 258 -54 434 281 65 7 chr11 9072182 9072335 -139711137 - MIR SINE MIR -3 259 98 1710 184 0 16 chr11 9072809 9073125 -139710347 - AluJo SINE Alu 0 312 2 2401 89 0 16 chr11 9073140 9073455 -139710017 - AluY SINE Alu 0 311 2 2366 80 14 0 chr11 9073689 9073977 -139709495 - AluSp SINE Alu -21 292 1 328 204 0 25 chr11 9074636 9074859 -139708613 + AluJo SINE Alu 11 285 -17 1706 174 28 0 chr11 9074920 9075208 -139708264 - AluSx SINE Alu -14 298 3 2561 60 0 0 chr11 9076773 9077073 -139706399 + AluY SINE Alu 1 300 -11 2232 92 0 49 chr11 9077082 9077222 -139706250 + AluSp SINE Alu 1 146 -167 2378 82 3 22 chr11 9077222 9077538 -139705934 + AluY SINE Alu 1 310 -1 2232 92 0 49 chr11 9077538 9077724 -139705748 + AluSp SINE Alu 146 311 -2 25 31 0 0 chr11 9078339 9078371 -139705101 + AT_rich Low_complexity Low_complexity 1 32 0 2628 59 0 0 chr11 9078400 9078706 -139704766 + AluY SINE Alu 1 306 -5 748 85 85 0 chr11 9078865 9078983 -139704489 - L1MA7 LINE L1 -161 6130 6003 651 204 151 42 chr11 9080846 9081111 -139702361 - L1MC5 LINE L1 -50 7911 7618 974 211 43 100 chr11 9081130 9081590 -139701882 + L1MC4a LINE L1 6194 6627 -1181 195 129 0 0 chr11 9081994 9082025 -139701447 + (A)n Simple_repeat Simple_repeat 1 31 0 492 237 50 14 chr11 9082205 9082344 -139701128 + MER5B DNA MER1_type 35 178 0 2095 117 0 17 chr11 9082474 9082773 -139700699 - AluSx SINE Alu -13 299 6 2064 130 13 7 chr11 9082920 9083221 -139700251 - AluSx SINE Alu -9 303 1 1825 109 4 4 chr11 9083294 9083541 -139699931 + AluSx SINE Alu 45 291 -21 2341 95 0 3 chr11 9083548 9083843 -139699629 + AluSc SINE Alu 1 294 -15 2458 90 0 3 chr11 9083845 9084155 -139699317 + AluSc SINE Alu 1 309 0 21 57 0 0 chr11 9084204 9084239 -139699233 + AT_rich Low_complexity Low_complexity 1 35 0 4147 139 40 83 chr11 9084314 9084560 -139698912 + L1MB7 LINE L1 5148 5403 -781 2130 133 3 3 chr11 9084560 9084868 -139698604 + AluSg SINE Alu 1 308 -2 2176 104 0 36 chr11 9084868 9085177 -139698295 + AluSx SINE Alu 1 298 -14 4147 139 40 83 chr11 9085177 9085689 -139697783 + L1MB7 LINE L1 5402 5934 -250 2117 71 0 4 chr11 9085689 9085942 -139697530 + AluY SINE Alu 1 252 -59 4147 139 40 83 chr11 9085942 9086196 -139697276 + L1MB7 LINE L1 5934 6115 -69 2362 82 7 0 chr11 9086196 9086489 -139696983 - AluY SINE Alu -16 295 1 4147 139 40 83 chr11 9086489 9086547 -139696925 + L1MB7 LINE L1 6115 6174 -10 231 36 0 0 chr11 9086551 9086579 -139696893 + (A)n Simple_repeat Simple_repeat 1 28 0 2481 84 3 0 chr11 9086582 9086893 -139696579 + AluSp SINE Alu 1 312 -1 233 156 89 0 chr11 9087339 9087384 -139696088 + L2 LINE L2 3224 3272 0 1651 98 0 5 chr11 9088163 9088378 -139695094 + AluSg/x SINE Alu 83 296 -16 1794 171 0 13 chr11 9088568 9088867 -139694605 + AluJb SINE Alu 1 295 -17 1031 146 6 0 chr11 9089092 9089256 -139694216 - FAM SINE Alu -10 165 1 277 102 20 20 chr11 9089450 9089499 -139693973 + MIR3 SINE MIR 150 198 -10 245 264 19 0 chr11 9090380 9090433 -139693039 + MIR SINE MIR 48 101 -107 2662 50 0 0 chr11 9090685 9090987 -139692485 + AluY SINE Alu 1 302 -9 2139 120 3 3 chr11 9091285 9091584 -139691888 + AluSx SINE Alu 1 299 -13 2253 116 6 3 chr11 9091918 9092229 -139691243 + AluSx SINE Alu 1 312 0 431 274 65 6 chr11 9092840 9093008 -139690464 + MIR SINE MIR 16 193 -69 637 245 45 35 chr11 9093015 9093215 -139690257 - MIR SINE MIR -1 261 60 2248 79 14 0 chr11 9093355 9093654 -139689818 - AluSq SINE Alu 0 303 1 328 290 60 0 chr11 9093782 9093882 -139689590 - L2 LINE L2 -14 3258 3153 1508 164 11 35 chr11 9094205 9094492 -139688980 + AluJb SINE Alu 1 280 -32 189 0 0 0 chr11 9094492 9094513 -139688959 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 2364 84 0 7 chr11 9095446 9095744 -139687728 + AluSc SINE Alu 1 296 -13 395 195 34 34 chr11 9096145 9096263 -139687209 + L1MB8 LINE L1 6031 6148 -30 1954 116 29 14 chr11 9096270 9096403 -139687069 + AluSq SINE Alu 2 132 -176 2093 133 0 7 chr11 9096403 9096711 -139686761 + AluSx SINE Alu 1 306 -6 1954 116 29 14 chr11 9096711 9096880 -139686592 + AluSq SINE Alu 132 308 0 1538 185 11 11 chr11 9096887 9097168 -139686304 + AluJb SINE Alu 1 281 -31 2296 75 3 10 chr11 9097168 9097462 -139686010 - AluY SINE Alu -18 293 1 673 207 7 22 chr11 9097578 9097713 -139685759 - FLAM_A SINE Alu 0 133 1 1789 178 3 3 chr11 9097785 9098072 -139685400 + AluJb SINE Alu 1 287 -25 1821 136 39 32 chr11 9098233 9098541 -139684931 + AluJo SINE Alu 3 312 0 343 207 82 52 chr11 9098554 9098612 -139684860 - L1ME4a LINE L1 -92 6029 5974 1717 160 23 39 chr11 9098612 9098919 -139684553 - AluJo SINE Alu -10 302 1 343 207 82 52 chr11 9098919 9098995 -139684477 - L1ME4a LINE L1 -147 5974 5891 24 0 0 0 chr11 9100033 9100057 -139683415 + AT_rich Low_complexity Low_complexity 1 24 0 895 211 0 0 chr11 9100560 9100716 -139682756 - AluSg/x SINE Alu -22 290 135 2278 86 10 3 chr11 9101161 9101462 -139682010 + AluY SINE Alu 1 303 -8 190 296 0 0 chr11 9101466 9101510 -139681962 + MIR SINE MIR 57 100 -108 2455 87 0 0 chr11 9101551 9101850 -139681622 + AluSq SINE Alu 1 299 -14 2341 105 0 0 chr11 9101851 9102155 -139681317 + AluY SINE Alu 1 304 -7 35 0 0 0 chr11 9102349 9102384 -139681088 + AT_rich Low_complexity Low_complexity 1 35 0 469 264 110 40 chr11 9102484 9102711 -139680761 - MIR SINE MIR -5 257 15 2051 126 38 0 chr11 9103077 9103370 -139680102 + AluSx SINE Alu 1 304 -8 2642 49 0 0 chr11 9103621 9103925 -139679547 + AluY SINE Alu 1 304 -7 959 173 0 63 chr11 9103928 9104119 -139679353 + AluSg/x SINE Alu 134 312 0 1806 142 0 65 chr11 9104210 9104535 -139678937 + AluSx SINE Alu 1 304 -8 2251 117 0 0 chr11 9104677 9104977 -139678495 + AluSc SINE Alu 1 300 -9 483 215 188 14 chr11 9104982 9105126 -139678346 + AluSg/x SINE Alu 135 303 -7 2150 124 7 3 chr11 9105130 9105436 -139678036 + AluSg SINE Alu 1 307 -3 1984 153 0 0 chr11 9105436 9105717 -139677755 + AluSx SINE Alu 6 286 -26 27 0 0 0 chr11 9105720 9105747 -139677725 + AT_rich Low_complexity Low_complexity 1 27 0 1386 100 116 4 chr11 9105750 9106000 -139677472 - MER33 DNA MER1_type -46 278 1 2420 68 0 0 chr11 9106153 9106446 -139677026 + AluY SINE Alu 1 293 -18 2479 71 0 0 chr11 9106453 9106749 -139676723 + AluY SINE Alu 1 296 -15 2295 112 7 0 chr11 9106821 9107117 -139676355 - AluSx SINE Alu -14 298 1 1646 179 15 4 chr11 9107341 9107614 -139675858 - AluJo SINE Alu -33 279 4 2424 93 7 3 chr11 9107810 9108120 -139675352 - AluSq SINE Alu -2 311 1 815 122 0 95 chr11 9109419 9109566 -139673906 + FLAM_C SINE Alu 1 133 0 450 119 0 30 chr11 9109950 9110017 -139673455 - AluJ/FLAM SINE Alu -242 70 6 451 304 47 0 chr11 9110418 9110566 -139672906 - MIR SINE MIR -14 248 94 2159 102 0 13 chr11 9110598 9110911 -139672561 + AluSg SINE Alu 1 309 -1 2219 97 3 7 chr11 9111177 9111467 -139672005 + AluSc SINE Alu 9 297 -12 686 35 0 76 chr11 9111467 9111612 -139671860 + (GGAA)n Simple_repeat Simple_repeat 1 134 0 34 42 0 0 chr11 9111639 9111687 -139671785 + AT_rich Low_complexity Low_complexity 1 48 0 2173 69 0 11 chr11 9111701 9111977 -139671495 + AluY SINE Alu 38 310 -1 2221 93 14 0 chr11 9112052 9112341 -139671131 + AluSx SINE Alu 1 293 -19 27 0 0 0 chr11 9112341 9112368 -139671104 + AT_rich Low_complexity Low_complexity 1 27 0 804 229 65 22 chr11 9112380 9112611 -139670861 - MIR SINE MIR 0 262 22 441 0 0 0 chr11 9112768 9112817 -139670655 + (CA)n Simple_repeat Simple_repeat 2 50 0 1969 122 14 37 chr11 9112825 9113121 -139670351 - AluSx SINE Alu -21 291 3 1347 211 26 68 chr11 9113151 9113459 -139670013 + AluJo SINE Alu 1 295 -7 1667 149 54 17 chr11 9113559 9113855 -139669617 + AluJo SINE Alu 1 307 -5 281 231 0 0 chr11 9113917 9113982 -139669490 - L3 LINE CR1 -175 1402 1338 2384 83 3 3 chr11 9115324 9115624 -139667848 - AluSp SINE Alu -13 300 1 25 31 0 0 chr11 9115794 9115826 -139667646 + AT_rich Low_complexity Low_complexity 1 32 0 2264 101 0 3 chr11 9116181 9116478 -139666994 + AluSg SINE Alu 1 296 -14 2024 158 3 0 chr11 9116504 9116815 -139666657 + AluJb SINE Alu 1 312 0 2238 100 3 17 chr11 9116880 9117180 -139666292 + AluSq SINE Alu 1 296 -17 1365 270 99 17 chr11 9117753 9118514 -139664958 + L2 LINE L2 2488 3313 0 1111 138 0 13 chr11 9118877 9119036 -139664436 + AluSx SINE Alu 1 157 -155 2202 105 0 32 chr11 9119193 9119507 -139663965 + AluSq SINE Alu 1 304 -9 2186 117 7 0 chr11 9119579 9119869 -139663603 - AluSx SINE Alu -18 294 3 724 171 85 0 chr11 9119892 9120021 -139663451 - FRAM SINE Alu -36 140 1 2090 122 10 7 chr11 9120856 9121152 -139662320 - AluSg SINE Alu -8 302 6 1959 139 10 7 chr11 9121191 9121485 -139661987 + AluSq SINE Alu 5 299 -14 2304 80 6 6 chr11 9121530 9121841 -139661631 + AluY SINE Alu 1 311 0 1484 171 6 70 chr11 9121982 9122128 -139661344 + AluJb SINE Alu 1 155 -168 2455 91 0 0 chr11 9122128 9122437 -139661035 + AluSq SINE Alu 2 310 -3 2130 111 35 0 chr11 9122440 9122728 -139660744 + AluSq SINE Alu 1 298 -15 1484 171 6 70 chr11 9122728 9122920 -139660552 + AluJb SINE Alu 157 323 0 22 35 0 0 chr11 9122945 9122974 -139660498 + AT_rich Low_complexity Low_complexity 1 29 0 1574 77 115 51 chr11 9122977 9123235 -139660237 + AluY SINE Alu 37 309 0 2396 92 3 0 chr11 9123241 9123546 -139659926 + AluSg SINE Alu 1 306 -4 2193 82 0 11 chr11 9123792 9124071 -139659401 - AluSg SINE Alu -20 290 15 225 0 0 0 chr11 9124101 9124126 -139659346 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2207 104 0 0 chr11 9124126 9124406 -139659066 - AluSx SINE Alu -32 280 1 1075 130 12 12 chr11 9124421 9124583 -139658889 + AluJb SINE Alu 129 290 -22 378 74 0 0 chr11 9124601 9124655 -139658817 + (CA)n Simple_repeat Simple_repeat 2 55 0 271 183 103 63 chr11 9124656 9124782 -139658690 + L1MC4a LINE L1 5781 5911 -1897 21 0 0 0 chr11 9124895 9124916 -139658556 + AT_rich Low_complexity Low_complexity 1 21 0 3369 196 86 10 chr11 9125026 9125837 -139657635 + L1MB5 LINE L1 5227 6106 -68 2407 76 0 3 chr11 9125844 9126135 -139657337 - AluSq SINE Alu -21 292 3 892 179 48 43 chr11 9126158 9126365 -139657107 - AluJo SINE Alu -17 295 88 358 104 30 30 chr11 9126367 9126434 -139657038 + L1MB8 LINE L1 6112 6178 0 2340 92 0 3 chr11 9129186 9129492 -139653980 - AluSg SINE Alu -5 305 1 1247 60 0 0 chr11 9129603 9129754 -139653718 + AluY SINE Alu 159 309 -2 306 71 24 48 chr11 9130541 9130625 -139652847 + (TA)n Simple_repeat Simple_repeat 1 82 0 2109 86 46 0 chr11 9130669 9130949 -139652523 + AluSg SINE Alu 1 293 -17 2085 143 3 13 chr11 9130949 9131085 -139652387 + AluSq SINE Alu 2 138 -165 2095 99 0 65 chr11 9131085 9131219 -139652253 + AluY SINE Alu 1 142 -169 2339 107 0 0 chr11 9131219 9131528 -139651944 + AluSx SINE Alu 1 309 -3 2095 99 0 65 chr11 9131528 9131715 -139651757 + AluY SINE Alu 142 301 -10 2085 143 3 13 chr11 9131715 9131879 -139651593 + AluSq SINE Alu 138 298 -5 2255 64 10 14 chr11 9131886 9132228 -139651244 + AluY SINE Alu 2 296 -15 3771 184 75 33 chr11 9132234 9132855 -139650617 - L1MB7 LINE L1 -5 6179 5586 2341 50 11 0 chr11 9132855 9133132 -139650340 - AluY SINE Alu -12 299 20 3771 184 75 33 chr11 9133132 9133172 -139650300 - L1MB7 LINE L1 -598 5586 5549 1698 153 32 7 chr11 9133172 9133453 -139650019 - AluSx SINE Alu -24 288 1 3771 184 75 33 chr11 9133453 9133742 -139649730 - L1MB7 LINE L1 -635 5549 5274 2126 132 0 16 chr11 9133742 9133874 -139649598 + AluSx SINE Alu 5 138 -174 2156 121 3 0 chr11 9133874 9134172 -139649300 + AluSx SINE Alu 1 299 -13 2126 132 0 16 chr11 9134172 9134341 -139649131 + AluSx SINE Alu 138 301 -11 2109 99 0 33 chr11 9134341 9134476 -139648996 + AluSc SINE Alu 1 139 -170 3771 184 75 33 chr11 9134342 9134476 -139648996 - L1MB7 LINE L1 -910 5274 5147 2427 89 3 0 chr11 9134476 9134780 -139648692 + AluSp SINE Alu 1 305 -8 3771 184 75 33 chr11 9134780 9135068 -139648404 - L1MB7 LINE L1 -1037 5147 5039 2109 99 0 33 chr11 9134780 9134946 -139648526 + AluSc SINE Alu 139 292 -17 1689 165 21 10 chr11 9135068 9135359 -139648113 - AluJb SINE Alu -18 294 1 3771 184 75 33 chr11 9135359 9135622 -139647850 - L1MB7 LINE L1 -1145 5039 4789 2034 120 0 24 chr11 9135623 9135845 -139647627 - AluSx SINE Alu 0 311 97 4750 170 71 48 chr11 9135845 9136892 -139646580 + MER11C LTR ERVK 1 1071 0 2034 120 0 24 chr11 9136892 9136987 -139646485 - AluSx SINE Alu -214 97 1 2028 214 133 24 chr11 9137038 9137315 -139646157 - L1MB7 LINE L1 -1446 4700 4455 2023 100 23 27 chr11 9137315 9137616 -139645856 - AluSc SINE Alu -9 300 1 2028 214 133 24 chr11 9137616 9137675 -139645797 - L1MB7 LINE L1 -1691 4455 4404 2096 105 17 7 chr11 9137675 9137970 -139645502 - AluSq SINE Alu -15 298 1 2028 214 133 24 chr11 9137970 9138023 -139645449 - L1MB7 LINE L1 -1742 4404 4358 1869 113 94 0 chr11 9138023 9138298 -139645174 - AluSx SINE Alu -11 301 1 2028 214 133 24 chr11 9138298 9138574 -139644898 - L1MB7 LINE L1 -1788 4358 3960 2221 117 0 0 chr11 9138623 9138923 -139644549 + AluSp SINE Alu 1 300 -13 2228 112 3 0 chr11 9139000 9139295 -139644177 - AluSx SINE Alu -16 296 1 840 156 8 0 chr11 9139303 9139425 -139644047 - FLAM_C SINE Alu -10 123 1 2165 120 3 0 chr11 9139481 9139781 -139643691 + AluSg SINE Alu 1 301 -9 248 355 40 0 chr11 9139892 9140016 -139643456 + MLT1J LTR MaLR 92 220 -291 21 0 0 0 chr11 9140625 9140646 -139642826 + AT_rich Low_complexity Low_complexity 1 21 0 1823 101 0 16 chr11 9143770 9144027 -139639445 - AluSx SINE Alu -11 301 49 298 191 15 29 chr11 9144027 9144095 -139639377 + AluSg SINE Alu 63 129 -171 304 233 11 40 chr11 9144146 9144322 -139639150 + C-rich Low_complexity Low_complexity 4 174 0 1462 106 5 10 chr11 9144565 9144763 -139638709 + AluSg/x SINE Alu 68 264 -46 37 0 0 0 chr11 9144775 9144812 -139638660 + AT_rich Low_complexity Low_complexity 1 37 0 2243 112 0 10 chr11 9144862 9145174 -139638298 - AluSx SINE Alu -3 309 1 1787 175 11 0 chr11 9145261 9145546 -139637926 - AluJb SINE Alu -24 288 1 2484 60 7 0 chr11 9145557 9145856 -139637616 - AluSp SINE Alu -12 301 1 1089 141 6 0 chr11 9145947 9146110 -139637362 - AluSp SINE Alu -14 299 136 1999 154 3 3 chr11 9146121 9146426 -139637046 - AluSx SINE Alu -7 305 1 2219 107 0 0 chr11 9146454 9146772 -139636700 + AluY SINE Alu 1 311 0 22 70 0 0 chr11 9146879 9146922 -139636550 + AT_rich Low_complexity Low_complexity 1 43 0 2302 87 10 13 chr11 9149295 9149604 -139633868 + AluSc SINE Alu 2 309 0 202 211 88 0 chr11 9149669 9149726 -139633746 - MIR SINE MIR -27 235 174 2253 113 0 10 chr11 9149751 9150062 -139633410 + AluSq SINE Alu 1 308 -5 649 188 0 0 chr11 9150064 9150165 -139633307 - FLAM_A SINE Alu -32 110 10 192 284 30 15 chr11 9150349 9150416 -139633056 - L2 LINE L2 -12 3301 3234 2226 105 0 7 chr11 9150528 9150822 -139632650 - AluSg SINE Alu -18 292 1 198 91 0 0 chr11 9150886 9150919 -139632553 + (CAT)n Simple_repeat Simple_repeat 3 35 0 2484 57 10 19 chr11 9151598 9151912 -139631560 + AluY SINE Alu 1 311 0 2086 125 3 6 chr11 9151965 9152278 -139631194 + AluSx SINE Alu 1 312 0 834 161 73 0 chr11 9152293 9152430 -139631042 + AluSg/x SINE Alu 130 276 -36 224 39 39 39 chr11 9152437 9152489 -139630983 + (CAAA)n Simple_repeat Simple_repeat 2 53 0 24 0 0 0 chr11 9153481 9153505 -139629967 + AT_rich Low_complexity Low_complexity 1 24 0 1371 197 37 54 chr11 9154322 9154617 -139628855 - AluJo SINE Alu -12 290 1 2456 77 3 0 chr11 9154914 9155212 -139628260 + AluSp SINE Alu 1 299 -14 2388 76 13 3 chr11 9155850 9156152 -139627320 + AluSq SINE Alu 1 305 -8 2187 109 3 0 chr11 9156646 9156940 -139626532 + AluSx SINE Alu 6 300 -12 2326 97 0 3 chr11 9157142 9157450 -139626022 - AluSx SINE Alu -5 307 1 423 109 0 0 chr11 9157621 9157676 -139625796 + Alu SINE Alu 238 292 -17 621 172 62 0 chr11 9157714 9157842 -139625630 + L1MB3 LINE L1 6041 6176 -7 224 308 175 17 chr11 9158433 9158553 -139624919 + MIR SINE MIR 75 213 -49 202 296 217 9 chr11 9158718 9158833 -139624639 + MIR SINE MIR 12 150 -112 1123 152 173 12 chr11 9158928 9159215 -139624257 + MER1B DNA MER1_type 1 338 -1 28 0 0 0 chr11 9159610 9159638 -139623834 + AT_rich Low_complexity Low_complexity 1 28 0 1432 181 55 15 chr11 9159638 9159909 -139623563 - AluJo SINE Alu -30 282 1 833 115 0 0 chr11 9161002 9161115 -139622357 - AluSg/x SINE Alu -10 299 187 832 237 10 5 chr11 9161246 9161444 -139622028 + L1MD3 LINE L1 7719 7917 -78 2147 130 3 0 chr11 9161582 9161883 -139621589 + AluSx SINE Alu 1 302 -10 363 82 16 0 chr11 9161930 9161991 -139621481 + L1MB8 LINE L1 5268 5329 -817 1543 106 128 0 chr11 9161992 9162218 -139621254 + AluSq SINE Alu 1 255 -58 929 142 43 6 chr11 9162229 9162391 -139621081 + AluSg/x SINE Alu 138 305 -5 2300 192 143 14 chr11 9162408 9163066 -139620406 + L1MB8 LINE L1 5324 6135 -49 2139 99 13 35 chr11 9163069 9163245 -139620227 - AluSx SINE Alu -6 306 139 2417 76 0 13 chr11 9163245 9163547 -139619925 - AluY SINE Alu -12 299 2 2139 99 13 35 chr11 9163547 9163683 -139619789 - AluSx SINE Alu -173 139 1 811 165 0 15 chr11 9163685 9163818 -139619654 - FLAM_C SINE Alu -12 131 1 2097 116 7 3 chr11 9164387 9164681 -139618791 - AluSx SINE Alu -17 295 1 867 153 0 29 chr11 9166339 9166476 -139616996 - FLAM_C SINE Alu 0 133 1 545 211 57 171 chr11 9166628 9166844 -139616628 + Charlie1a DNA MER1_type 11 250 -2511 330 26 0 0 chr11 9166844 9166883 -139616589 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 545 211 57 171 chr11 9166883 9166899 -139616573 + Charlie1a DNA MER1_type 250 266 -2495 1899 98 4 0 chr11 9166899 9167144 -139616328 - AluSp SINE Alu -67 246 1 545 211 57 171 chr11 9167144 9167185 -139616287 + Charlie1a DNA MER1_type 266 252 -2509 2259 95 0 0 chr11 9167185 9167479 -139615993 - AluY SINE Alu -17 294 1 545 211 57 171 chr11 9167479 9167502 -139615970 + Charlie1a DNA MER1_type 251 275 -1180 2275 70 0 0 chr11 9167502 9167773 -139615699 - AluSg SINE Alu -18 292 22 510 232 18 0 chr11 9167776 9167881 -139615591 + Charlie1a DNA MER1_type 547 656 -2105 2047 101 4 11 chr11 9167881 9168157 -139615315 + AluSp SINE Alu 1 274 -39 598 217 145 6 chr11 9168164 9168330 -139615142 + Charlie1a DNA MER1_type 1264 1452 -3 1820 80 121 15 chr11 9168836 9169100 -139614372 - AluY SINE Alu -19 292 1 338 306 83 6 chr11 9169328 9169508 -139613964 + L1ME LINE L1 5625 5818 -303 216 0 0 0 chr11 9169554 9169578 -139613894 + (TA)n Simple_repeat Simple_repeat 2 25 0 2458 77 0 0 chr11 9169578 9169876 -139613596 - AluSc SINE Alu -11 298 1 1632 219 215 4 chr11 9169911 9170428 -139613044 + L1ME2 LINE L1 5502 6127 -37 2161 106 0 3 chr11 9170775 9171079 -139612393 + AluSg1 SINE Alu 1 303 0 2435 94 0 0 chr11 9171131 9171440 -139612032 + AluSq SINE Alu 1 309 -4 23 0 0 0 chr11 9171453 9171476 -139611996 + AT_rich Low_complexity Low_complexity 1 23 0 473 174 43 0 chr11 9171499 9171591 -139611881 + L1MB7 LINE L1 6080 6175 -9 676 248 44 60 chr11 9172235 9172550 -139610922 - L1M4 LINE L1 -2040 4106 3797 613 153 194 69 chr11 9172955 9173099 -139610373 - FRAM SINE Alu -4 162 1 2583 64 0 0 chr11 9173276 9173587 -139609885 - AluY SINE Alu 0 311 1 2131 113 0 13 chr11 9173806 9174108 -139609364 - AluSp SINE Alu -15 298 1 2173 70 11 0 chr11 9174313 9174586 -139608886 + AluSg SINE Alu 31 306 -4 440 259 133 14 chr11 9175173 9175316 -139608156 - MIR SINE MIR -102 160 1 292 225 28 14 chr11 9175549 9175620 -139607852 - MIR SINE MIR -114 148 77 39 22 0 0 chr11 9175674 9175720 -139607752 + AT_rich Low_complexity Low_complexity 1 46 0 478 114 29 0 chr11 9175931 9176001 -139607471 + AluS SINE Alu 225 296 -15 2368 52 42 0 chr11 9176024 9176313 -139607159 + AluY SINE Alu 1 301 -10 1788 138 10 52 chr11 9176362 9176667 -139606805 - AluJb SINE Alu -20 292 1 1216 218 45 8 chr11 9379151 9379417 -139404055 - AluJo SINE Alu -36 276 1 2450 53 3 17 chr11 9379448 9379749 -139403723 - AluY SINE Alu -14 297 1 1381 183 122 0 chr11 9379751 9380013 -139403459 - AluJo SINE Alu -7 295 2 646 93 131 19 chr11 9380124 9380231 -139403241 + MER21A LTR ERV1 15 133 -798 2088 123 0 3 chr11 9380231 9380515 -139402957 + AluSx SINE Alu 1 283 -29 495 227 7 27 chr11 9380611 9380761 -139402711 + MER39 LTR ERV1 219 365 -342 189 0 0 0 chr11 9381183 9381204 -139402268 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 1328 154 33 9 chr11 9381218 9381432 -139402040 - AluJb SINE Alu -30 282 64 2291 89 3 3 chr11 9381432 9381724 -139401748 - AluSp SINE Alu -21 292 1 1914 124 4 0 chr11 9381963 9382222 -139401250 - AluSq SINE Alu -53 260 1 1785 170 3 14 chr11 9382419 9382713 -139400759 + AluJo SINE Alu 9 299 -13 534 98 0 0 chr11 9382733 9382815 -139400657 + (GGGA)n Simple_repeat Simple_repeat 1 82 0 200 224 15 0 chr11 9383474 9383541 -139399931 + CT-rich Low_complexity Low_complexity 1 68 0 237 277 128 69 chr11 9383789 9383977 -139399495 + MIR SINE MIR 37 235 -27 1823 163 3 3 chr11 9383996 9384302 -139399170 + AluJb SINE Alu 1 306 0 214 304 132 25 chr11 9384324 9384650 -139398822 + L2 LINE L2 1728 2088 -1226 3270 146 2 28 chr11 9384671 9385205 -139398267 + MER1A DNA MER1_type 1 520 -9 2348 93 30 0 chr11 9385332 9385634 -139397838 + AluSx SINE Alu 1 311 -1 671 254 98 23 chr11 9386026 9386290 -139397182 + L2 LINE L2 2915 3198 -115 493 49 0 0 chr11 9386389 9386450 -139397022 + AluY SINE Alu 2 62 -256 1315 109 0 6 chr11 9386450 9386624 -139396848 + AluSg/x SINE Alu 95 267 -43 626 170 0 0 chr11 9386627 9386721 -139396751 + AluSg/x SINE Alu 72 165 -145 314 327 19 19 chr11 9387115 9387222 -139396250 - MLT1B-int LTR MaLR -509 862 756 1704 147 25 39 chr11 9387243 9387529 -139395943 - AluJo SINE Alu -30 282 1 783 186 0 0 chr11 9387710 9387839 -139395633 - FLAM_C SINE Alu -4 129 1 673 183 8 0 chr11 9388174 9388300 -139395172 - FLAM_A SINE Alu -5 137 11 225 333 0 0 chr11 9388314 9388392 -139395080 - MLT1B-int LTR MaLR -961 410 333 457 111 0 0 chr11 9388394 9388457 -139395015 - MLT1B LTR MaLR 0 390 328 1779 165 0 20 chr11 9388759 9389056 -139394416 - AluJo SINE Alu -21 291 1 357 312 16 24 chr11 9389224 9389349 -139394123 - L2 LINE L2 -1 3271 3148 2091 133 0 13 chr11 9390061 9390398 -139393074 - AluSx SINE Alu 0 312 1 612 144 17 0 chr11 9391007 9391180 -139392292 + (TA)n Simple_repeat Simple_repeat 1 176 0 383 154 51 29 chr11 9391181 9391356 -139392116 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 31 0 0 0 chr11 9391356 9391387 -139392085 + AT_rich Low_complexity Low_complexity 1 31 0 198 103 23 58 chr11 9391387 9391474 -139391998 + (TATAA)n Simple_repeat Simple_repeat 2 85 0 373 192 92 67 chr11 9391477 9391597 -139391875 + L1MCa LINE L1 1952 2074 -4352 1604 174 30 33 chr11 9391722 9392021 -139391451 - AluJo SINE Alu -14 298 1 3229 157 33 117 chr11 9392288 9393052 -139390420 - MER21A LTR ERV1 -19 912 213 2436 84 3 0 chr11 9394004 9394314 -139389158 - AluSp SINE Alu 0 313 3 2334 106 0 0 chr11 9394315 9394616 -139388856 - AluSg1 SINE Alu -8 301 1 1997 150 0 0 chr11 9395490 9395776 -139387696 - AluJo SINE Alu -26 286 1 1664 164 27 14 chr11 9395961 9396254 -139387218 - AluJb SINE Alu -5 307 11 299 328 51 69 chr11 9396431 9396763 -139386709 - L2 LINE L2 -22 3250 2925 318 50 0 0 chr11 9397813 9397853 -139385619 + (CA)n Simple_repeat Simple_repeat 1 40 0 1958 132 16 13 chr11 9397988 9398291 -139385181 - AluSq SINE Alu -1 312 9 442 257 9 0 chr11 9398486 9398591 -139384881 - L2 LINE L2 -507 2807 2702 1017 147 0 85 chr11 9398628 9398805 -139384667 - AluJo SINE Alu -148 164 3 1355 144 5 0 chr11 9398825 9399026 -139384446 + AluSg/x SINE Alu 87 288 -24 342 98 0 0 chr11 9399027 9399078 -139384394 + (TG)n Simple_repeat Simple_repeat 1 51 0 445 295 58 31 chr11 9399221 9399546 -139383926 - L1MEd LINE L1 -4908 1211 878 488 290 141 19 chr11 9400382 9400644 -139382828 + L2 LINE L2 1832 2125 -1189 716 169 0 0 chr11 9400652 9400770 -139382702 + FLAM_C SINE Alu 7 124 -19 24 0 0 0 chr11 9400772 9400796 -139382676 + AT_rich Low_complexity Low_complexity 1 24 0 829 254 33 12 chr11 9400824 9401064 -139382408 + L2 LINE L2 2159 2403 -911 607 120 11 0 chr11 9401401 9401493 -139381979 - AluS SINE Alu -216 97 5 862 154 0 0 chr11 9401550 9401673 -139381799 + FLAM_C SINE Alu 3 125 -18 2293 219 70 10 chr11 9401728 9402239 -139381233 - MLT1F LTR MaLR 0 542 1 182 162 27 0 chr11 9402295 9402332 -139381140 + MIR SINE MIR 117 154 -108 216 111 0 0 chr11 9402347 9402383 -139381089 + (T)n Simple_repeat Simple_repeat 1 36 0 2209 105 7 3 chr11 9402948 9403244 -139380228 - AluSg SINE Alu -13 297 1 22 0 0 0 chr11 9403246 9403268 -139380204 + AT_rich Low_complexity Low_complexity 1 22 0 1127 288 65 47 chr11 9403381 9404104 -139379368 + MLT2F LTR ERVL 10 626 -2 1617 49 0 0 chr11 9404150 9404333 -139379139 + AluY SINE Alu 1 183 -128 1343 184 39 12 chr11 9404434 9404690 -139378782 - AluJo SINE Alu -49 263 1 2308 81 0 3 chr11 9404918 9405201 -139378271 - AluSx SINE Alu -30 282 1 207 0 0 0 chr11 9407852 9407875 -139375597 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2409 100 3 0 chr11 9408127 9408437 -139375035 - AluSx SINE Alu -1 311 1 1570 108 0 5 chr11 9408608 9408820 -139374652 + AluSg/x SINE Alu 88 298 -14 21 36 0 0 chr11 9410554 9410582 -139372890 + AT_rich Low_complexity Low_complexity 1 28 0 1115 126 0 13 chr11 9410653 9410812 -139372660 + AluJo SINE Alu 125 281 -31 33 0 8 0 chr11 9410812 9410890 -139372582 + AT_rich Low_complexity Low_complexity 1 33 0 26 30 0 0 chr11 9411019 9411052 -139372420 + AT_rich Low_complexity Low_complexity 1 33 0 1885 149 13 3 chr11 9411585 9411886 -139371586 + AluJb SINE Alu 1 304 -8 333 282 110 23 chr11 9412907 9413142 -139370330 - L1MC/D LINE L1 -456 5665 5504 280 344 0 0 chr11 9413657 9413750 -139369722 + MER5B DNA MER1_type 24 116 -62 1778 129 65 14 chr11 9413767 9414045 -139369427 - AluSx SINE Alu -12 300 9 2275 108 3 3 chr11 9414190 9414495 -139368977 + AluSg SINE Alu 2 306 -4 350 262 62 0 chr11 9414636 9414781 -139368691 + L1MC5 LINE L1 7311 7464 -497 272 237 113 41 chr11 9414814 9414911 -139368561 + L1MC4 LINE L1 7634 7737 -305 874 211 18 0 chr11 9415007 9415178 -139368294 + AluSg/x SINE Alu 113 286 -24 577 151 0 0 chr11 9415885 9415971 -139367501 - AluJ/FLAM SINE Alu -225 87 2 3956 171 4 19 chr11 9416071 9416101 -139367371 + L1M4 LINE L1 3239 3268 -2878 1702 167 14 3 chr11 9416101 9416395 -139367077 + AluJb SINE Alu 3 299 -13 3956 171 4 19 chr11 9416395 9417099 -139366373 + L1M4 LINE L1 3268 3962 -2184 300 247 74 39 chr11 9417506 9417737 -139365735 + L1MEc LINE L1 1428 1666 -4730 22 70 0 0 chr11 9417925 9417968 -139365504 + AT_rich Low_complexity Low_complexity 1 43 0 427 305 60 54 chr11 9418017 9418847 -139364625 + L1M4 LINE L1 4335 5169 -977 873 136 0 0 chr11 9418868 9418986 -139364486 + FLAM_C SINE Alu 1 118 -25 30 0 0 0 chr11 9418986 9419016 -139364456 + AT_rich Low_complexity Low_complexity 1 30 0 2156 125 3 0 chr11 9419147 9419451 -139364021 + AluSx SINE Alu 3 307 -5 2368 115 0 0 chr11 9419554 9419858 -139363614 + AluSx SINE Alu 1 304 -8 2168 123 0 3 chr11 9420269 9420562 -139362910 - AluSg SINE Alu -18 292 1 1285 127 0 11 chr11 9420573 9420762 -139362710 - AluSx SINE Alu -14 298 112 650 234 135 35 chr11 9421127 9421209 -139362263 - L2 LINE L2 -266 3047 2975 1697 193 0 16 chr11 9421209 9421520 -139361952 - AluJb SINE Alu -6 306 1 650 234 135 35 chr11 9421520 9421838 -139361634 - L2 LINE L2 -338 2975 2596 2210 110 3 0 chr11 9421897 9422197 -139361275 - AluSp SINE Alu -12 301 1 1036 76 15 0 chr11 9422197 9422328 -139361144 - AluSx SINE Alu -175 137 5 595 242 124 60 chr11 9422341 9422655 -139360817 - L2 LINE L2 -797 2517 2184 * 1995 235 113 32 chr11 9422653 9423161 -139360311 + L2 LINE L2 2247 2826 -487 2375 94 7 3 chr11 9423161 9423469 -139360003 + AluSc SINE Alu 1 309 0 1995 235 113 32 chr11 9423469 9423677 -139359795 + L2 LINE L2 2826 3016 -297 195 139 0 0 chr11 9423817 9423853 -139359619 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 2178 107 31 0 chr11 9423944 9424234 -139359238 + AluSx SINE Alu 1 299 -13 1755 180 27 3 chr11 9425093 9425393 -139358079 - AluJb SINE Alu -5 307 1 336 203 16 0 chr11 9425507 9425571 -139357901 + MER58 DNA MER1_type 2356 2420 0 510 280 56 36 chr11 9425874 9426225 -139357247 + L2 LINE L2 2889 3306 -7 977 311 107 28 chr11 9426416 9427088 -139356384 - L2 LINE L2 -1480 1834 1080 893 200 16 5 chr11 9427088 9427273 -139356199 + MER5A DNA MER1_type 1 187 -2 977 311 107 28 chr11 9427273 9427447 -139356025 - L2 LINE L2 -2234 1080 921 1715 221 21 18 chr11 9427454 9427834 -139355638 - MLT1E2 LTR MaLR 0 626 246 889 141 0 28 chr11 9427836 9427978 -139355494 - FLAM_C SINE Alu -5 138 1 1031 227 8 25 chr11 9428027 9428269 -139355203 - MLT1E2 LTR MaLR -388 238 1 387 293 64 16 chr11 9428340 9428528 -139354944 - L2 LINE L2 -2498 816 620 199 310 0 0 chr11 9428552 9428623 -139354849 + MER5A DNA MER1_type 36 106 -83 24 53 0 0 chr11 9428828 9428866 -139354606 + AT_rich Low_complexity Low_complexity 1 38 0 845 156 0 0 chr11 9428866 9428988 -139354484 - FLAM_C SINE Alu -16 127 6 4315 121 15 126 chr11 9429066 9430619 -139352853 + pTR5 LTR ERV1 741 2606 0 836 222 233 15 chr11 9430619 9431022 -139352450 + Charlie2b DNA MER1_type 176 666 -2116 811 208 49 70 chr11 9431112 9431279 -139352193 + Charlie2a DNA MER1_type 1528 1688 -1174 830 176 0 0 chr11 9431279 9431410 -139352062 + FLAM_C SINE Alu 3 133 0 811 208 49 70 chr11 9431410 9431526 -139351946 + Charlie2a DNA MER1_type 1688 1805 -1057 455 69 0 0 chr11 9431526 9431584 -139351888 - Alu SINE Alu -14 295 238 493 232 24 65 chr11 9431688 9431802 -139351670 + L2 LINE L2 2233 2339 -975 1507 177 10 20 chr11 9431802 9432096 -139351376 + AluJb SINE Alu 1 291 -21 493 232 24 65 chr11 9432096 9432149 -139351323 + L2 LINE L2 2339 2393 -921 2058 137 0 0 chr11 9432188 9432495 -139350977 - AluSx SINE Alu -5 307 1 1516 232 60 64 chr11 9432497 9432831 -139350641 + L2 LINE L2 2784 3116 -197 1436 179 32 21 chr11 9432831 9433116 -139350356 - AluJo SINE Alu -24 288 1 1516 232 60 64 chr11 9433116 9433312 -139350160 + L2 LINE L2 3116 3311 -2 488 172 0 50 chr11 9433747 9433846 -139349626 + FLAM SINE Alu 38 131 -12 22 0 0 0 chr11 9433846 9433868 -139349604 + AT_rich Low_complexity Low_complexity 1 22 0 2187 95 3 0 chr11 9433875 9434179 -139349293 + AluSp SINE Alu 1 305 -8 261 269 192 10 chr11 9434377 9434481 -139348991 - MLT1K LTR MaLR -355 233 111 240 266 203 28 chr11 9434937 9435080 -139348392 + L2 LINE L2 331 498 -2816 503 305 40 34 chr11 9435107 9435432 -139348040 + L2 LINE L2 603 929 -2385 509 386 92 16 chr11 9436050 9436560 -139346912 + L2 LINE L2 1831 2379 -935 2184 89 23 3 chr11 9436584 9436887 -139346585 + AluSx SINE Alu 1 309 -3 21 36 0 0 chr11 9437013 9437041 -139346431 + AT_rich Low_complexity Low_complexity 1 28 0 2157 95 0 0 chr11 9437262 9437573 -139345899 + AluSx SINE Alu 1 311 0 1200 113 0 11 chr11 9437577 9437763 -139345709 + AluSg/x SINE Alu 129 312 0 2131 74 14 7 chr11 9438645 9438930 -139344542 + AluSq SINE Alu 1 287 -26 240 35 0 0 chr11 9438933 9438962 -139344510 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 317 173 0 0 chr11 9439100 9439152 -139344320 - Tigger2a DNA MER2_type -67 377 326 729 138 9 0 chr11 9439156 9439272 -139344200 + L1 LINE L1 4699 4815 -1331 1669 112 84 21 chr11 9439282 9439568 -139343904 - Tigger2a DNA MER2_type -130 304 1 4514 179 32 34 chr11 9439810 9441338 -139342134 - L1MB2 LINE L1 -1 6170 4640 1866 117 29 0 chr11 9441338 9441611 -139341861 - AluSq SINE Alu -31 282 2 4514 179 32 34 chr11 9441611 9441765 -139341707 - L1MB2 LINE L1 -1531 4640 4501 2337 93 3 0 chr11 9441765 9442076 -139341396 - AluSp SINE Alu -1 312 1 4514 179 32 34 chr11 9442076 9442180 -139341292 - L1MB2 LINE L1 -1670 4501 4398 593 194 0 9 chr11 9442199 9442307 -139341165 - FLAM_C SINE Alu -12 131 25 2146 162 25 10 chr11 9442318 9442725 -139340747 - L1MB2 LINE L1 -1735 4411 3999 2309 82 3 0 chr11 9442852 9443155 -139340317 - AluSg SINE Alu -6 304 1 190 250 0 0 chr11 9443673 9443713 -139339759 - MIR SINE MIR -64 198 159 370 282 117 28 chr11 9444117 9444330 -139339142 + L2 LINE L2 2829 3060 -212 342 0 0 0 chr11 9444707 9444745 -139338727 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 940 236 64 130 chr11 9444881 9444939 -139338533 - MLT1G LTR MaLR -7 583 523 2175 101 0 0 chr11 9444939 9445237 -139338235 - AluSg1 SINE Alu -11 298 1 940 236 64 130 chr11 9445237 9445741 -139337731 - MLT1G LTR MaLR -67 523 58 626 207 52 0 chr11 9445934 9446050 -139337422 - MER68 LTR ERV1 0 562 441 1735 150 11 0 chr11 9446050 9446324 -139337148 + AluSx SINE Alu 1 277 -35 363 23 0 0 chr11 9446355 9446399 -139337073 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1033 171 0 0 chr11 9446420 9446590 -139336882 - AluJo/FRAM SINE Alu -8 304 135 1504 193 24 0 chr11 9446591 9446887 -139336585 - AluJb SINE Alu -9 303 1 358 85 34 34 chr11 9446888 9446947 -139336525 - MER68 LTR ERV1 -503 59 1 2194 106 3 3 chr11 9447021 9447332 -139336140 + AluSx SINE Alu 1 311 -1 946 132 7 13 chr11 9447346 9447498 -139335974 + AluSq/x SINE Alu 1 151 -161 956 158 0 0 chr11 9447599 9447751 -139335721 + AluJb SINE Alu 157 308 -4 2097 86 7 13 chr11 9448102 9448403 -139335069 - AluSg SINE Alu -11 299 1 757 132 0 47 chr11 9448441 9448570 -139334902 - FRAM SINE Alu -22 154 32 203 313 31 21 chr11 9448596 9448692 -139334780 + L2 LINE L2 2988 3084 -188 993 285 115 26 chr11 9448876 9449381 -139334091 - MLT1K LTR MaLR -12 576 27 1610 131 7 53 chr11 9449484 9449766 -139333706 + AluJo SINE Alu 31 299 -13 2242 113 0 0 chr11 9450567 9450878 -139332594 - AluSx SINE Alu -1 311 1 1914 140 7 0 chr11 9451748 9452041 -139331431 - AluSx SINE Alu -13 299 5 464 289 134 30 chr11 9452041 9452242 -139331230 + MIR SINE MIR 30 251 -11 306 378 30 22 chr11 9452321 9452456 -139331016 - L3b LINE CR1 -108 1475 1340 2219 90 0 29 chr11 9452491 9452802 -139330670 + AluSx SINE Alu 1 302 -10 195 232 12 98 chr11 9452906 9452988 -139330484 - L2 LINE L2 -11 3261 3187 889 260 64 35 chr11 9453422 9453734 -139329738 + MER102b DNA MER1_type 21 341 0 2130 103 0 0 chr11 9453986 9454276 -139329196 - AluSx SINE Alu -22 290 1 2011 128 27 0 chr11 9454440 9454737 -139328735 - AluSx SINE Alu -7 305 1 256 200 0 18 chr11 9454796 9454851 -139328621 - MLT1L LTR MaLR -16 599 546 1072 169 0 76 chr11 9454851 9455087 -139328385 - AluJb SINE Alu -9 303 86 302 146 0 0 chr11 9455087 9455135 -139328337 - MLT1L LTR MaLR -65 550 503 608 213 47 0 chr11 9455316 9455443 -139328029 - MLT1L LTR MaLR -341 274 142 1388 154 33 18 chr11 9455903 9456176 -139327296 - L1MB8 LINE L1 -2 6176 5900 1473 87 0 0 chr11 9456288 9456484 -139326988 + AluSg/x SINE Alu 117 312 0 225 178 0 0 chr11 9456657 9456702 -139326770 + T-rich Low_complexity Low_complexity 1 45 0 342 283 10 10 chr11 9457228 9457327 -139326145 - MIR3 SINE MIR -10 198 100 2460 50 3 0 chr11 9457377 9457675 -139325797 - AluSp SINE Alu -14 299 1 181 143 232 18 chr11 9459667 9459723 -139323749 - MIR3 SINE MIR -5 203 136 1417 238 88 7 chr11 9459736 9460143 -139323329 - L1ME1 LINE L1 -19 6147 5708 1529 213 47 14 chr11 9460143 9460410 -139323062 - L1MDa LINE L1 -3847 2693 2436 1959 145 0 0 chr11 9460410 9460713 -139322759 - AluSx SINE Alu -9 303 1 1529 213 47 14 chr11 9460713 9461035 -139322437 - L1MDa LINE L1 -4104 2436 2082 2080 121 0 0 chr11 9461052 9461350 -139322122 - AluSg SINE Alu -12 298 1 736 172 0 8 chr11 9461362 9461484 -139321988 - AluSq/x SINE Alu -184 129 9 193 292 97 0 chr11 9461496 9461568 -139321904 - MIR SINE MIR -103 105 27 216 0 0 0 chr11 9461577 9461601 -139321871 + (GA)n Simple_repeat Simple_repeat 1 24 0 1381 188 7 7 chr11 9461601 9461877 -139321595 - AluJb SINE Alu -34 278 3 1626 181 14 0 chr11 9461891 9462184 -139321288 - AluJb SINE Alu -11 301 5 2180 112 0 0 chr11 9462220 9462516 -139320956 - AluSx SINE Alu -16 296 1 204 207 35 52 chr11 9462899 9462957 -139320515 - L2 LINE L2 0 3272 3216 1761 130 67 0 chr11 9463587 9463857 -139319615 - AluSx SINE Alu -24 288 1 1043 140 0 0 chr11 9464174 9464324 -139319148 + AluSq/x SINE Alu 2 151 -162 404 170 53 23 chr11 9464425 9464522 -139318950 - AluSc SINE Alu -91 208 119 982 238 114 65 chr11 9464557 9464654 -139318818 - L1MC4a LINE L1 -1944 5864 5773 2028 105 23 10 chr11 9464654 9464959 -139318513 + AluSg SINE Alu 1 309 -1 982 238 114 65 chr11 9464959 9465150 -139318322 - L1MC4a LINE L1 -2035 5773 5593 306 0 0 0 chr11 9465150 9465184 -139318288 + (CA)n Simple_repeat Simple_repeat 2 35 0 982 238 114 65 chr11 9465184 9465340 -139318132 - L1MC4a LINE L1 -2215 5593 5397 1877 86 4 0 chr11 9466248 9466540 -139316932 + AluSg SINE Alu 37 329 0 559 192 0 0 chr11 9467290 9467389 -139316083 - U13 snRNA snRNA -2 102 4 227 261 11 57 chr11 9469116 9469204 -139314268 - L3 LINE CR1 -852 725 642 36 53 0 0 chr11 9470847 9470904 -139312568 + GC_rich Low_complexity Low_complexity 1 57 0 24 67 0 0 chr11 9470981 9471026 -139312446 + GC_rich Low_complexity Low_complexity 1 45 0 35 78 0 0 chr11 9471224 9471301 -139312171 + GC_rich Low_complexity Low_complexity 1 77 0 237 65 0 0 chr11 9471356 9471387 -139312085 + (TCC)n Simple_repeat Simple_repeat 2 32 0 24 32 0 0 chr11 9471432 9471463 -139312009 + GC_rich Low_complexity Low_complexity 1 31 0 33 0 0 0 chr11 9471957 9471990 -139311482 + GC_rich Low_complexity Low_complexity 1 33 0 2138 98 3 22 chr11 9472713 9473029 -139310443 - AluSx SINE Alu -2 310 1 311 282 264 17 chr11 9473031 9473084 -139310388 - L1ME LINE L1 -386 5735 5696 1817 92 32 51 chr11 9473084 9473398 -139310074 - AluSx SINE Alu -4 308 1 311 282 264 17 chr11 9473398 9473518 -139309954 - L1ME LINE L1 -425 5696 5519 1576 179 41 0 chr11 9474063 9474354 -139309118 - AluSx SINE Alu -4 308 6 24 53 0 0 chr11 9474368 9474406 -139309066 + AT_rich Low_complexity Low_complexity 1 38 0 184 303 106 0 chr11 9474462 9474528 -139308944 - L3 LINE CR1 -1261 316 244 * 396 277 91 22 chr11 9474494 9474677 -139308795 - MIR SINE MIR -60 202 3 485 277 92 8 chr11 9476510 9476658 -139306814 - MIR3 SINE MIR -36 172 30 233 278 144 0 chr11 9477569 9477659 -139305813 + L1ME4a LINE L1 5353 5455 -2353 445 184 10 78 chr11 9477738 9477841 -139305631 - MER20 DNA MER1_type -5 214 119 322 276 71 63 chr11 9477844 9478010 -139305462 + L1ME4a LINE L1 5724 5895 -226 1610 153 44 0 chr11 9478010 9478323 -139305149 + AluJb SINE Alu 1 325 0 322 276 71 63 chr11 9478323 9478394 -139305078 + L1ME4a LINE L1 5895 5964 -157 36 23 0 0 chr11 9478586 9478629 -139304843 + AT_rich Low_complexity Low_complexity 1 43 0 1747 185 14 71 chr11 9478644 9478725 -139304747 + MLT1A1 LTR MaLR 1 85 -280 2030 94 0 30 chr11 9478725 9479022 -139304450 + AluSc SINE Alu 2 289 -20 1747 185 14 71 chr11 9479022 9479307 -139304165 + MLT1A1 LTR MaLR 85 346 -19 555 128 12 0 chr11 9479459 9479545 -139303927 + AluSg/x SINE Alu 212 298 -11 1770 172 7 0 chr11 9480279 9480570 -139302902 + AluJo SINE Alu 1 293 -19 31 0 0 0 chr11 9480624 9480655 -139302817 + AT_rich Low_complexity Low_complexity 1 31 0 233 304 108 39 chr11 9480873 9480975 -139302497 + LTR16B LTR ERVL 119 227 -237 1832 147 6 55 chr11 9481215 9481541 -139301931 - AluJb SINE Alu -2 310 1 1987 144 7 3 chr11 9481847 9482153 -139301319 + AluSx SINE Alu 1 307 -5 28 61 0 0 chr11 9482186 9482235 -139301237 + AT_rich Low_complexity Low_complexity 1 49 0 423 214 151 31 chr11 9482754 9482913 -139300559 - MIR3 SINE MIR -25 183 6 386 286 26 94 chr11 9483000 9483192 -139300280 + L2 LINE L2 3021 3199 -73 936 115 0 183 chr11 9483662 9483897 -139299575 - 7SK RNA RNA 0 193 2 872 211 100 21 chr11 9483983 9484125 -139299347 - MER33 DNA MER1_type -2273 312 183 2086 117 0 0 chr11 9484125 9484406 -139299066 + AluSq SINE Alu 19 299 -14 872 211 100 21 chr11 9484406 9484552 -139298920 - MER33 DNA MER1_type -2402 183 1 2187 106 0 3 chr11 9484854 9485176 -139298296 + AluY SINE Alu 1 321 0 189 0 0 0 chr11 9486259 9486280 -139297192 + (A)n Simple_repeat Simple_repeat 1 21 0 313 101 0 117 chr11 9486500 9486577 -139296895 + Alu SINE Alu 1 47 -255 947 195 5 70 chr11 9487740 9487955 -139295517 - AluJo SINE Alu -27 285 85 1495 205 10 27 chr11 9487956 9488253 -139295219 - AluJo SINE Alu -15 297 6 195 340 0 0 chr11 9488260 9488307 -139295165 + MIR SINE MIR 46 92 -170 2277 113 2 59 chr11 9488332 9488360 -139295112 - Tigger2a DNA MER2_type -2316 392 364 1387 155 143 19 chr11 9488360 9488618 -139294854 - AluSg SINE Alu -20 290 1 2277 113 2 59 chr11 9488618 9488998 -139294474 - Tigger2a DNA MER2_type -2344 364 7 309 296 144 8 chr11 9488999 9489124 -139294348 + MIR SINE MIR 103 244 -18 192 40 0 0 chr11 9489163 9489188 -139294284 + (CTG)n Simple_repeat Simple_repeat 2 26 0 30 27 0 0 chr11 9489482 9489519 -139293953 + AT_rich Low_complexity Low_complexity 1 37 0 1597 187 3 47 chr11 9489519 9489819 -139293653 - AluJb SINE Alu -25 287 1 311 318 99 26 chr11 9490250 9490401 -139293071 + MIR3 SINE MIR 20 181 -27 198 0 0 0 chr11 9490819 9490841 -139292631 + (TA)n Simple_repeat Simple_repeat 2 23 0 403 225 181 0 chr11 9491002 9491162 -139292310 - L1MC4a LINE L1 -1860 5948 5760 24 32 0 0 chr11 9491336 9491367 -139292105 + AT_rich Low_complexity Low_complexity 1 31 0 287 246 43 14 chr11 9492227 9492296 -139291176 - MIR3 SINE MIR -51 157 87 195 324 14 28 chr11 9492481 9492552 -139290920 + L2 LINE L2 3239 3308 -5 6258 51 14 14 chr11 9493183 9493610 -139289862 + L1PA8A LINE L1 5254 5683 -448 2151 120 0 17 chr11 9493610 9493911 -139289561 + AluSq SINE Alu 3 298 -15 6258 51 14 14 chr11 9493911 9494332 -139289140 + L1PA8A LINE L1 5682 6102 -29 198 91 0 0 chr11 9494333 9494366 -139289106 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 1161 142 25 15 chr11 9494409 9494613 -139288859 - AluJb SINE Alu -22 290 85 21 0 0 0 chr11 9494909 9494930 -139288542 + AT_rich Low_complexity Low_complexity 1 21 0 234 174 0 0 chr11 9495093 9495139 -139288333 + (CA)n Simple_repeat Simple_repeat 2 47 0 759 199 23 0 chr11 9495531 9495662 -139287810 + AluJo SINE Alu 1 134 -178 30 27 0 0 chr11 9495745 9495782 -139287690 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr11 9495822 9495843 -139287629 + AT_rich Low_complexity Low_complexity 1 21 0 2094 120 29 13 chr11 9495876 9496184 -139287288 - AluSq SINE Alu 0 313 1 1676 189 0 17 chr11 9496386 9496687 -139286785 - AluJo SINE Alu -16 296 1 2121 137 0 0 chr11 9496695 9497002 -139286470 - AluSx SINE Alu -5 307 1 1932 147 0 23 chr11 9497006 9497306 -139286166 - AluSx SINE Alu -19 293 1 1015 142 73 0 chr11 9497387 9497591 -139285881 - L1MA8 LINE L1 -3 6288 6070 1378 163 38 0 chr11 9497665 9497929 -139285543 + L1MB7 LINE L1 5895 6168 -16 1681 163 4 8 chr11 9498174 9498425 -139285047 + AluJo SINE Alu 1 250 -62 324 316 175 12 chr11 9499116 9499287 -139284185 - MIR SINE MIR -58 204 6 288 102 20 0 chr11 9499773 9499822 -139283650 - AluSp/q SINE Alu -7 296 247 2744 138 8 6 chr11 9499923 9500415 -139283057 + L1MB1 LINE L1 5298 5790 -378 698 139 8 23 chr11 9500415 9500537 -139282935 + L1PB2 LINE L1 6025 6151 0 1723 168 28 31 chr11 9500556 9500568 -139282904 + L1MB1 LINE L1 5769 5780 -388 2290 119 0 0 chr11 9500568 9500880 -139282592 + AluSx SINE Alu 1 312 0 1723 168 28 31 chr11 9500880 9501259 -139282213 + L1MB1 LINE L1 5780 6159 -9 22 56 0 0 chr11 9501973 9502009 -139281463 + AT_rich Low_complexity Low_complexity 1 36 0 186 385 68 17 chr11 9502818 9502935 -139280537 - L2 LINE L2 -14 3258 3136 1996 146 13 0 chr11 9502983 9503291 -139280181 + AluSx SINE Alu 1 312 0 438 234 0 0 chr11 9503560 9503667 -139279805 + L1MB7 LINE L1 6059 6165 -19 729 319 53 83 chr11 9503900 9504311 -139279161 - L2 LINE L2 0 3272 2874 1988 153 51 33 chr11 9504315 9504765 -139278707 + L1MB7 LINE L1 5727 6184 0 1790 160 16 44 chr11 9504955 9505274 -139278198 + AluJb SINE Alu 1 310 -2 192 40 0 0 chr11 9505988 9506013 -139277459 + (CTG)n Simple_repeat Simple_repeat 2 26 0 1642 168 3 52 chr11 9506312 9506640 -139276832 - AluJo SINE Alu 0 312 1 313 117 39 0 chr11 9506651 9506728 -139276744 + (TTTA)n Simple_repeat Simple_repeat 1 80 0 23 0 0 0 chr11 9506735 9506758 -139276714 + AT_rich Low_complexity Low_complexity 1 23 0 670 205 0 0 chr11 9506758 9506870 -139276602 - FLAM_C SINE Alu -25 118 7 198 91 0 0 chr11 9507048 9507081 -139276391 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 328 238 95 106 chr11 9507081 9507270 -139276202 + LTR67 LTR ERVL 32 218 -339 318 219 15 133 chr11 9507329 9507525 -139275947 + LTR67 LTR ERVL 363 535 -22 362 347 55 36 chr11 9507567 9507786 -139275686 + L2 LINE L2 2869 3091 -181 207 383 74 0 chr11 9507992 9508073 -139275399 + L2 LINE L2 3125 3211 -61 581 178 0 0 chr11 9508094 9508184 -139275288 + FLAM_C SINE Alu 29 118 -25 29 60 0 0 chr11 9508184 9508234 -139275238 + AT_rich Low_complexity Low_complexity 1 50 0 1744 88 161 4 chr11 9508390 9508651 -139274821 - AluSx SINE Alu 0 302 1 437 262 117 0 chr11 9509955 9510100 -139273372 + MIR SINE MIR 86 247 -15 430 299 7 0 chr11 9510113 9510257 -139273215 - L1ME LINE L1 -426 5695 5551 1064 137 37 0 chr11 9510462 9510623 -139272849 - AluSq SINE Alu -8 305 139 1825 153 13 32 chr11 9510625 9510933 -139272539 - AluJb SINE Alu -10 302 1 513 283 127 67 chr11 9510935 9511144 -139272328 - LTR67 LTR ERVL -60 497 302 2348 102 76 15 chr11 9511144 9511487 -139271985 - THE1B LTR MaLR 0 364 1 513 283 127 67 chr11 9511487 9511743 -139271729 - LTR67 LTR ERVL -255 302 4 928 245 69 4 chr11 9512056 9512289 -139271183 + MIR SINE MIR 1 248 -14 599 334 63 12 chr11 9512456 9512788 -139270684 - L2 LINE L2 -1108 2206 1858 1778 135 0 80 chr11 9513006 9513332 -139270140 + AluJb SINE Alu 1 300 -12 22 0 0 0 chr11 9514260 9514282 -139269190 + AT_rich Low_complexity Low_complexity 1 22 0 1832 147 45 0 chr11 9514479 9514765 -139268707 + AluJb SINE Alu 1 299 -13 1402 154 123 11 chr11 9514777 9515037 -139268435 + AluSg SINE Alu 1 289 -21 1055 114 81 0 chr11 9515053 9515202 -139268270 + AluSg/x SINE Alu 134 294 -18 21 0 0 0 chr11 9515585 9515606 -139267866 + AT_rich Low_complexity Low_complexity 1 21 0 258 302 12 36 chr11 9516434 9516467 -139267005 + T-rich Low_complexity Low_complexity 4 36 -206 2222 119 0 0 chr11 9516467 9516769 -139266703 - AluSx SINE Alu -9 303 2 258 302 12 36 chr11 9516769 9516897 -139266575 + T-rich Low_complexity Low_complexity 36 242 0 1734 194 16 10 chr11 9517112 9517422 -139266050 - AluJo SINE Alu 0 312 1 460 266 94 0 chr11 9517765 9517893 -139265579 - MIR SINE MIR -6 256 117 403 266 165 19 chr11 9518107 9518265 -139265207 - MER5A DNA MER1_type 0 189 9 735 211 108 5 chr11 9518420 9518614 -139264858 + MER58C DNA MER1_type 2 215 0 279 274 142 25 chr11 9518654 9518858 -139264614 - L2 LINE L2 -464 2850 2623 270 190 138 0 chr11 9519060 9519118 -139264354 + MER112 DNA MER1_type 178 243 -17 186 303 40 50 chr11 9519218 9519317 -139264155 - L2 LINE L2 -887 2427 2330 2057 129 10 10 chr11 9519418 9519728 -139263744 - AluSx SINE Alu -2 310 1 1821 121 86 0 chr11 9520652 9520932 -139262540 - AluSx SINE Alu -8 304 1 22 0 0 0 chr11 9521034 9521056 -139262416 + AT_rich Low_complexity Low_complexity 1 22 0 720 151 8 0 chr11 9521056 9521175 -139262297 + AluSq/x SINE Alu 1 120 -193 360 0 0 0 chr11 9521186 9521226 -139262246 + (TA)n Simple_repeat Simple_repeat 2 41 0 2204 120 0 3 chr11 9521226 9521526 -139261946 - AluSc SINE Alu -10 299 1 289 228 65 16 chr11 9521689 9521812 -139261660 + L1ME4a LINE L1 5989 6117 -4 7698 61 10 6 chr11 9522043 9523403 -139260069 - L1P2 LINE L1 -529 5625 4264 625 183 7 10 chr11 9523513 9523648 -139259824 - LTR27 LTR ERV1 -213 423 299 926 147 11 17 chr11 9523715 9523892 -139259580 - LTR28 LTR ERV1 -844 176 1 202 354 0 0 chr11 9523916 9523981 -139259491 - L2 LINE L2 -940 2374 2310 581 306 83 20 chr11 9523996 9524073 -139259399 + L2 LINE L2 2084 2155 -1159 2218 158 85 5 chr11 9524073 9524460 -139259012 + MER47B DNA MER2_type 1 418 0 581 306 83 20 chr11 9524460 9524634 -139258838 + L2 LINE L2 2155 2351 -963 1620 119 0 4 chr11 9524964 9525191 -139258281 - AluSc SINE Alu -83 226 1 346 204 64 14 chr11 9525339 9525493 -139257979 + L1ME4a LINE L1 1196 6118 0 2142 97 14 10 chr11 9526444 9526732 -139256740 + AluSg SINE Alu 1 289 -21 892 123 0 0 chr11 9526732 9526849 -139256623 - AluJo/FLAM SINE Alu -183 129 13 679 206 85 11 chr11 9526927 9527116 -139256356 - L1MC5 LINE L1 -68 7893 7691 21 82 0 0 chr11 9528613 9528662 -139254810 + AT_rich Low_complexity Low_complexity 1 49 0 2091 107 24 7 chr11 9528848 9529139 -139254333 - AluSg SINE Alu -14 296 1 1188 142 9 0 chr11 9529359 9529570 -139253902 - L1PA16 LINE L1 -153 6013 5801 300 207 187 20 chr11 9529731 9529881 -139253591 + MIR SINE MIR 14 188 -74 318 277 0 0 chr11 9529926 9530009 -139253463 + L1MC/D LINE L1 5725 5807 -2001 25 0 0 0 chr11 9530417 9530442 -139253030 + AT_rich Low_complexity Low_complexity 1 25 0 366 210 59 183 chr11 9530680 9530899 -139252573 - MIR3 SINE MIR -13 195 4 28 0 0 0 chr11 9532262 9532290 -139251182 + AT_rich Low_complexity Low_complexity 1 28 0 1231 119 0 97 chr11 9532392 9532619 -139250853 - MER46A DNA MER2_type 0 236 32 773 162 14 0 chr11 9532637 9532785 -139250687 - L1MD3 LINE L1 -1999 5996 5847 1533 161 61 7 chr11 9533081 9533360 -139250112 - AluJo SINE Alu -18 294 1 23 101 0 0 chr11 9533460 9533539 -139249933 + AT_rich Low_complexity Low_complexity 1 79 0 1091 253 30 33 chr11 9533626 9533993 -139249479 - L1MC4a LINE L1 -1833 5975 5610 4065 183 51 20 chr11 9534152 9535368 -139248104 - L1M4c LINE L1 -4831 2024 872 654 119 50 10 chr11 9535374 9535475 -139247997 + FLAM_C SINE Alu 9 113 -30 287 193 0 0 chr11 9535505 9535562 -139247910 - L1M4c LINE L1 -5978 881 825 * 1746 216 48 20 chr11 9535561 9535960 -139247512 - L1M4c LINE L1 -6439 420 11 2159 90 0 0 chr11 9536051 9536353 -139247119 + AluSc SINE Alu 1 302 0 298 297 143 0 chr11 9536904 9536995 -139246477 - L2 LINE L2 -1 3271 3168 1739 135 50 30 chr11 9537020 9537317 -139246155 + AluJo SINE Alu 1 303 -9 551 211 92 0 chr11 9537346 9537455 -139246017 - MER94 DNA DNA 0 134 16 25 75 0 0 chr11 9539727 9539780 -139243692 + AT_rich Low_complexity Low_complexity 1 53 0 188 198 62 123 chr11 9540206 9540287 -139243185 - MER5A DNA MER1_type 0 189 114 934 185 121 24 chr11 9540291 9540540 -139242932 + AluSg SINE Alu 35 307 -3 28 48 0 0 chr11 9540690 9540732 -139242740 + AT_rich Low_complexity Low_complexity 1 42 0 1970 110 10 14 chr11 9540780 9541071 -139242401 - AluSc SINE Alu -19 290 1 7580 25 0 0 chr11 9541338 9542211 -139241261 - L1PA3 LINE L1 -3 6152 5280 328 264 365 6 chr11 9542497 9542664 -139240808 + MIR SINE MIR 16 242 -20 585 254 258 10 chr11 9542687 9542982 -139240490 + L3 LINE CR1 685 1052 -525 407 279 39 16 chr11 9542991 9543120 -139240352 - MIR SINE MIR -21 241 110 501 293 86 82 chr11 9543141 9543690 -139239782 - LTR67 LTR ERVL -4 553 3 289 279 89 0 chr11 9543738 9543817 -139239655 + L2 LINE L2 3228 3313 0 948 269 142 24 chr11 9543819 9544242 -139239230 + L3 LINE CR1 1042 1514 -63 317 251 280 23 chr11 9544493 9544668 -139238804 + MIR SINE MIR 30 249 -13 631 279 71 5 chr11 9544783 9544980 -139238492 + MIR SINE MIR 53 262 0 191 303 61 15 chr11 9545052 9545118 -139238354 + MIR3 SINE MIR 109 177 -31 815 207 52 123 chr11 9545569 9545878 -139237594 - LTR41 LTR ERVL -17 756 470 659 186 124 12 chr11 9545965 9546126 -139237346 - LTR41 LTR ERVL -594 179 1 754 204 137 31 chr11 9546159 9546385 -139237087 + MIR SINE MIR 11 260 -2 2312 73 0 19 chr11 9546572 9546889 -139236583 - AluY SINE Alu 0 311 1 2119 84 0 11 chr11 9547435 9547749 -139235723 + AluSx SINE Alu 1 311 0 21 36 0 0 chr11 9550262 9550290 -139233182 + AT_rich Low_complexity Low_complexity 1 28 0 2053 47 0 4 chr11 9550830 9551086 -139232386 + AluY SINE Alu 47 301 -10 1352 133 38 0 chr11 9551103 9551314 -139232158 + MER20 DNA MER1_type 1 219 0 1391 227 174 10 chr11 9551983 9552467 -139231005 + L1ME3 LINE L1 5580 6142 -20 1823 118 35 0 chr11 9552507 9552795 -139230677 - AluSx SINE Alu -14 298 1 207 286 91 13 chr11 9553898 9553975 -139229497 + MIR SINE MIR 20 102 -160 282 93 0 0 chr11 9555221 9555264 -139228208 + MADE1 DNA Mariner 38 80 0 351 241 120 8 chr11 9555854 9555987 -139227485 - MIR SINE MIR -68 194 47 250 132 0 57 chr11 9557452 9557505 -139225967 + L2 LINE L2 3223 3272 0 427 358 53 24 chr11 9558105 9558351 -139225121 + L2 LINE L2 2578 2830 -484 296 266 22 43 chr11 9558374 9558500 -139224972 + (TGGA)n Simple_repeat Simple_repeat 1 123 -57 2261 97 10 0 chr11 9558500 9558808 -139224664 + AluSq SINE Alu 1 311 -2 296 266 22 43 chr11 9558808 9558865 -139224607 + (TGGA)n Simple_repeat Simple_repeat 123 180 0 1931 240 48 26 chr11 9559156 9559966 -139223506 - L2 LINE L2 0 3313 2482 264 219 25 50 chr11 9560394 9560513 -139222959 + (TA)n Simple_repeat Simple_repeat 1 116 0 915 221 13 24 chr11 9560815 9561038 -139222434 + MLT1A1 LTR MaLR 173 365 0 909 239 6 0 chr11 9561165 9561332 -139222140 - MER5A DNA MER1_type -21 168 1 1382 323 113 23 chr11 9561804 9562798 -139220674 + L2 LINE L2 1606 2688 -626 205 219 62 16 chr11 9563353 9563417 -139220055 - MIR3 SINE MIR -33 175 109 412 264 33 30 chr11 9563862 9564008 -139219464 + MIR SINE MIR 1 149 -59 236 258 18 126 chr11 9564488 9564655 -139218817 + L2 LINE L2 2966 3114 -158 2942 67 14 3 chr11 9565093 9565464 -139218008 + THE1C LTR MaLR 1 375 0 2110 147 68 66 chr11 9565817 9566315 -139217157 - MLT1D LTR MaLR -2 503 5 239 259 36 9 chr11 9566450 9566562 -139216910 + LTR16B LTR ERVL 291 405 -59 940 284 46 18 chr11 9566569 9566851 -139216621 + ERVL LTR ERVL 1739 2028 -2968 840 314 20 4 chr11 9566891 9567146 -139216326 + ERVL LTR ERVL 4254 4512 -1252 303 311 42 36 chr11 9567171 9567364 -139216108 + ERVL LTR ERVL 4935 5128 -636 351 308 23 0 chr11 9567476 9567609 -139215863 + ERVL LTR ERVL 5191 5326 -328 2203 218 78 53 chr11 9567754 9567804 -139215668 - MER65A-int LTR ERV1 -3972 899 852 1781 159 7 0 chr11 9567804 9568099 -139215373 - AluSx SINE Alu -8 304 8 2203 218 78 53 chr11 9568099 9568150 -139215322 - MER65A-int LTR ERV1 -4019 852 804 1893 139 0 0 chr11 9568150 9568476 -139214996 - AluJb SINE Alu 0 326 1 2203 218 78 53 chr11 9568476 9568870 -139214602 - MER65A-int LTR ERV1 -4067 804 376 3793 41 5 2 chr11 9568870 9569311 -139214161 - MLT2A1 LTR ERVL -2 442 1 2203 218 78 53 chr11 9569311 9569513 -139213959 - MER65A-int LTR ERV1 -4495 376 181 2883 152 46 67 chr11 9569513 9570126 -139213346 + LTR9 LTR ERV1 1 600 -12 288 287 16 25 chr11 9570153 9570275 -139213197 - MER65A-int LTR ERV1 -4703 168 48 2712 111 27 36 chr11 9570319 9570377 -139213095 - MER65A LTR ERV1 0 445 388 2353 122 71 29 chr11 9570377 9570417 -139213055 - MSTA LTR MaLR 0 428 391 2840 6 0 0 chr11 9570417 9570733 -139212739 + AluYb8 SINE Alu 1 316 -2 2353 122 71 29 chr11 9570733 9570745 -139212727 - MSTA LTR MaLR -37 391 381 1777 160 24 0 chr11 9570745 9571038 -139212434 + AluJo SINE Alu 2 301 -11 2353 122 71 29 chr11 9571038 9571395 -139212077 - MSTA LTR MaLR -47 381 1 2712 111 27 36 chr11 9571395 9571744 -139211728 - MER65A LTR ERV1 -57 388 40 252 59 0 0 chr11 9571744 9571778 -139211694 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2712 111 27 36 chr11 9571778 9571818 -139211654 - MER65A LTR ERV1 -405 40 1 1309 267 55 0 chr11 9571825 9572155 -139211317 + LTR16B LTR ERVL 9 356 -108 450 161 354 15 chr11 9572250 9572380 -139211092 + MER5A DNA MER1_type 16 189 0 331 301 116 7 chr11 9572473 9572619 -139210853 - MIR3 SINE MIR -43 165 4 361 291 0 0 chr11 9572684 9572770 -139210702 + MER21B LTR ERV1 1 86 -777 1267 215 109 15 chr11 9572842 9573400 -139210072 + MER21B LTR ERV1 98 754 -109 561 172 203 44 chr11 9573453 9573680 -139209792 + MER33 DNA MER1_type 62 324 0 4606 147 62 25 chr11 9574125 9575003 -139208469 - MER4D LTR ERV1 0 872 1 2084 55 0 36 chr11 9575459 9575734 -139207738 + AluY SINE Alu 38 302 -9 21 0 0 0 chr11 9576574 9576595 -139206877 + AT_rich Low_complexity Low_complexity 1 21 0 1837 133 30 10 chr11 9579278 9579578 -139203894 + AluJb SINE Alu 1 306 -6 494 274 116 3 chr11 9579580 9579933 -139203539 + L1ME4a LINE L1 5203 5597 -743 2273 94 3 0 chr11 9579966 9580274 -139203198 + AluSx SINE Alu 1 309 -3 227 343 0 0 chr11 9581212 9581279 -139202193 + L2 LINE L2 3206 3272 0 268 204 148 37 chr11 9582040 9582148 -139201324 + L1ME4a LINE L1 6000 6119 -2 294 273 230 21 chr11 9582394 9582581 -139200891 + MIR SINE MIR 32 257 -5 2361 66 0 14 chr11 9582650 9582937 -139200535 - AluSc SINE Alu -23 286 4 2247 82 0 50 chr11 9584337 9584656 -139198816 - AluY SINE Alu -8 303 1 1903 264 107 35 chr11 9585154 9585801 -139197671 - MER115 DNA AcHobo 0 693 1 703 209 68 12 chr11 9587288 9587451 -139196021 + MER5B DNA MER1_type 1 172 -6 2108 104 7 0 chr11 9587906 9588194 -139195278 + AluSx SINE Alu 6 295 -17 192 143 89 54 chr11 9588437 9588493 -139194979 + MIR3 SINE MIR 143 200 -8 1725 137 0 83 chr11 9588517 9588830 -139194642 - AluJb SINE Alu -25 287 1 394 259 118 22 chr11 9588911 9589046 -139194426 - MIR SINE MIR -30 232 85 941 170 0 82 chr11 9589088 9589135 -139194337 - MER5B DNA MER1_type 0 178 129 2118 140 0 3 chr11 9589135 9589443 -139194029 - AluSx SINE Alu -5 307 1 941 170 0 82 chr11 9589443 9589589 -139193883 - MER5B DNA MER1_type -49 129 1 1043 179 10 0 chr11 9589739 9589957 -139193515 + AluJb SINE Alu 87 306 0 1956 124 32 38 chr11 9590145 9590459 -139193013 + AluSx SINE Alu 1 312 0 597 249 24 83 chr11 9590984 9591237 -139192235 - MIR SINE MIR -8 254 17 503 281 59 59 chr11 9591863 9592119 -139191353 - MIR SINE MIR -6 256 1 1902 112 11 21 chr11 9593444 9593729 -139189743 + AluJo SINE Alu 1 282 -30 258 32 0 0 chr11 9593729 9593760 -139189712 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 2493 69 0 19 chr11 9594415 9594732 -139188740 + AluY SINE Alu 1 311 0 809 185 94 22 chr11 9595590 9595706 -139187766 - L1MC/D LINE L1 -743 5403 5297 1865 179 3 0 chr11 9595706 9596002 -139187470 + AluSx SINE Alu 1 297 -15 809 185 94 22 chr11 9596002 9596141 -139187331 - L1MC/D LINE L1 -849 5297 5167 27 0 0 0 chr11 9596141 9596168 -139187304 + AT_rich Low_complexity Low_complexity 1 27 0 2429 59 0 3 chr11 9596168 9596457 -139187015 - AluY SINE Alu -23 288 1 831 158 24 0 chr11 9596467 9596594 -139186878 - FLAM_C SINE Alu -1 132 3 644 209 44 0 chr11 9596601 9596759 -139186713 - L1MC/D LINE L1 -2811 3335 3171 30 27 0 0 chr11 9598755 9598792 -139184680 + AT_rich Low_complexity Low_complexity 1 37 0 625 281 98 72 chr11 9599496 9599884 -139183588 + HAL1 LINE L1 73 482 -2025 183 42 0 0 chr11 9599884 9599908 -139183564 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 625 281 98 72 chr11 9599908 9600102 -139183370 + HAL1 LINE L1 482 670 -1837 1777 233 24 9 chr11 9600191 9600616 -139182856 - L1ME1 LINE L1 -5 6161 5731 1108 201 97 37 chr11 9600617 9600712 -139182760 - L1MD2 LINE L1 -315 6044 5956 1967 164 0 3 chr11 9600712 9601010 -139182462 + AluSx SINE Alu 1 297 -15 1108 201 97 37 chr11 9601010 9601213 -139182259 - L1MD2 LINE L1 -403 5956 5728 2108 101 3 7 chr11 9601373 9601670 -139181802 - AluSc SINE Alu -13 296 1 232 337 50 40 chr11 9601798 9601899 -139181573 - L2 LINE L2 -48 3224 3123 349 191 24 36 chr11 9601993 9602077 -139181395 + MIR SINE MIR 180 262 0 858 193 99 9 chr11 9602443 9602666 -139180806 + L1MB8 LINE L1 5931 6173 -5 1263 124 0 0 chr11 9603090 9603281 -139180191 - L1PA16 LINE L1 -194 5957 5767 22 35 0 0 chr11 9604607 9604636 -139178836 + AT_rich Low_complexity Low_complexity 1 29 0 776 206 0 0 chr11 9604935 9605066 -139178406 + AluSq/x SINE Alu 3 133 -180 2171 115 3 3 chr11 9605294 9605589 -139177883 - AluSx SINE Alu -12 300 6 528 194 0 40 chr11 9605611 9605735 -139177737 + L1MB7 LINE L1 6051 6169 -15 2106 133 3 3 chr11 9605743 9606044 -139177428 + AluJb SINE Alu 1 301 -11 22 0 0 0 chr11 9606202 9606224 -139177248 + AT_rich Low_complexity Low_complexity 1 22 0 5033 95 37 1 chr11 9606431 9607107 -139176365 + L1PA15 LINE L1 5463 6162 -3 719 141 0 0 chr11 9607584 9607683 -139175789 + AluJ/FLAM SINE Alu 2 100 -212 262 225 142 33 chr11 9608958 9609078 -139174394 - L1ME4a LINE L1 -1 6120 5988 2151 102 10 7 chr11 9609080 9609373 -139174099 - AluSc SINE Alu -15 294 1 2089 134 0 7 chr11 9609407 9609713 -139173759 + AluSx SINE Alu 1 304 -8 630 158 17 25 chr11 9610040 9610160 -139173312 + L1MB2 LINE L1 6038 6156 -15 255 196 0 20 chr11 9610168 9610219 -139173253 + L1ME LINE L1 5615 5664 -457 1677 127 13 71 chr11 9610908 9611216 -139172256 + AluSc SINE Alu 3 292 -17 211 300 0 17 chr11 9611236 9611296 -139172176 + GA-rich Low_complexity Low_complexity 3 61 0 228 246 0 0 chr11 9612377 9612438 -139171034 + (TA)n Simple_repeat Simple_repeat 1 61 0 1286 179 71 40 chr11 9613374 9613671 -139169801 + AluJb SINE Alu 5 310 -2 2407 87 3 0 chr11 9613693 9613992 -139169480 - AluSp SINE Alu -13 300 1 2405 76 0 0 chr11 9614479 9614769 -139168703 - AluSp SINE Alu -23 290 1 21 0 0 0 chr11 9615380 9615401 -139168071 + AT_rich Low_complexity Low_complexity 1 21 0 394 335 158 28 chr11 9616326 9616522 -139166950 + L2 LINE L2 2942 3188 -84 2430 96 207 5 chr11 9616522 9616909 -139166563 + MER4C LTR ERV1 1 465 0 394 335 158 28 chr11 9616909 9616996 -139166476 + L2 LINE L2 3188 3262 -10 492 211 48 80 chr11 9617366 9617658 -139165814 - MER112 DNA MER1_type -8 252 1 518 276 99 5 chr11 9617795 9617987 -139165485 - MIR SINE MIR 0 262 53 2673 33 0 0 chr11 9618006 9618307 -139165165 - AluY SINE Alu -10 301 1 204 309 29 15 chr11 9618533 9618601 -139164871 + L2 LINE L2 3187 3255 -17 323 221 15 0 chr11 9618633 9618701 -139164771 + MIR SINE MIR 54 122 -86 221 269 0 30 chr11 9619212 9619279 -139164193 + GA-rich Low_complexity Low_complexity 2 66 0 2392 89 0 19 chr11 9620025 9620340 -139163132 + AluSc SINE Alu 1 309 0 2845 110 106 9 chr11 9620805 9621231 -139162241 + MLT1C LTR MaLR 1 467 0 820 311 196 36 chr11 9621589 9622452 -139161020 + L3 LINE CR1 480 1480 -97 332 164 15 0 chr11 9622453 9622520 -139160952 + (TG)n Simple_repeat Simple_repeat 2 69 0 1941 83 0 149 chr11 9622538 9622888 -139160584 - AluSq SINE Alu -15 298 1 1791 148 16 26 chr11 9622998 9623302 -139160170 + AluJo SINE Alu 1 301 -11 899 125 0 0 chr11 9624758 9624886 -139158586 + FLAM_C SINE Alu 16 143 0 294 29 0 0 chr11 9625303 9625338 -139158134 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 411 143 12 168 chr11 9626041 9626202 -139157270 - MER104 DNA Tc2 -3 177 42 2468 90 0 0 chr11 9626208 9626520 -139156952 + AluSx SINE Alu 1 312 0 1887 153 7 7 chr11 9626749 9627049 -139156423 - AluJb SINE Alu -12 300 1 261 264 11 22 chr11 9628183 9628274 -139155198 + GA-rich Low_complexity Low_complexity 5 94 0 891 161 0 0 chr11 9628361 9628491 -139154981 - FLAM_C SINE Alu -3 130 1 2502 64 0 16 chr11 9629159 9629470 -139154002 - AluY SINE Alu -5 306 1 595 104 26 149 chr11 9629482 9629525 -139153947 - L1MB4 LINE L1 -6 6174 6127 2340 75 17 0 chr11 9629525 9629819 -139153653 - AluSp SINE Alu -14 299 1 595 104 26 149 chr11 9629819 9629830 -139153642 - L1MB4 LINE L1 -53 6127 6116 2203 94 3 0 chr11 9629830 9630116 -139153356 - AluSp SINE Alu 0 313 27 595 104 26 149 chr11 9630116 9630214 -139153258 - L1MB4 LINE L1 -64 6116 6040 1613 224 52 72 chr11 9630986 9631088 -139152384 - L1ME3A LINE L1 -99 6140 6037 1726 145 10 52 chr11 9631088 9631398 -139152074 + AluJo SINE Alu 2 298 -14 1613 224 52 72 chr11 9631398 9631834 -139151638 - L1ME3A LINE L1 -202 6037 5613 * 1934 246 108 62 chr11 9631833 9632940 -139150532 - L1ME3A LINE L1 -945 5270 4113 360 286 0 0 chr11 9633201 9633299 -139150173 - L1ME3A LINE L1 -2262 3953 3856 589 258 52 34 chr11 9633353 9633497 -139149975 - L1ME3A LINE L1 -3921 2475 2335 2264 93 0 0 chr11 9633497 9633786 -139149686 - AluSc SINE Alu -20 289 1 589 258 52 34 chr11 9633786 9633990 -139149482 - L1ME3A LINE L1 -4061 2335 2121 578 220 64 7 chr11 9634762 9634903 -139148569 + MER58B DNA MER1_type 191 339 -2 2185 88 6 50 chr11 9635513 9635830 -139147642 + AluSg SINE Alu 1 303 -7 21 0 0 0 chr11 9636663 9636684 -139146788 + AT_rich Low_complexity Low_complexity 1 21 0 2109 120 3 10 chr11 9637090 9637391 -139146081 - AluSx SINE Alu -13 299 1 22 0 0 0 chr11 9639350 9639372 -139144100 + AT_rich Low_complexity Low_complexity 1 22 0 416 102 17 0 chr11 9639374 9639433 -139144039 - U7 snRNA snRNA -2 61 2 949 209 51 105 chr11 9640117 9640307 -139143165 + L1MC4 LINE L1 7620 7819 -223 1282 69 0 17 chr11 9640307 9640482 -139142990 + L1PA8 LINE L1 6001 6172 0 949 209 51 105 chr11 9640482 9640721 -139142751 + L1MC4 LINE L1 7819 8026 -16 28 0 0 0 chr11 9641430 9641458 -139142014 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 9643271 9643292 -139140180 + AT_rich Low_complexity Low_complexity 1 21 0 460 236 73 73 chr11 9644617 9644795 -139138677 - MER5B DNA MER1_type 0 178 1 297 254 70 0 chr11 9644811 9644882 -139138590 - MIR3 SINE MIR -52 156 81 282 56 0 0 chr11 9645790 9645826 -139137646 + (ATTG)n Simple_repeat Simple_repeat 2 37 0 1843 158 0 7 chr11 9645826 9646104 -139137368 - AluJo SINE Alu -26 286 11 362 327 12 48 chr11 9646326 9646410 -139137062 + L1MC4a LINE L1 5777 5854 -1954 2349 102 0 6 chr11 9646410 9646724 -139136748 + AluSx SINE Alu 1 312 0 362 327 12 48 chr11 9646724 9646807 -139136665 + L1MC4a LINE L1 5854 5938 -1870 1798 150 3 18 chr11 9647321 9647633 -139135839 - AluJb SINE Alu 0 308 1 387 272 35 26 chr11 9647719 9647833 -139135639 - MER5A DNA MER1_type -30 159 45 300 324 42 35 chr11 9647720 9647862 -139135610 + MER5A DNA MER1_type 43 185 -4 * 2543 153 84 19 chr11 9648396 9648964 -139134508 + L1MB4 LINE L1 5575 6179 -1 1648 149 38 60 chr11 9650133 9650449 -139133023 - AluJo SINE Alu -3 309 1 834 248 220 28 chr11 9651134 9651633 -139131839 - L2 LINE L2 -2 3311 2716 2629 43 0 0 chr11 9652343 9652643 -139130829 - AluY SINE Alu -11 300 1 351 294 203 0 chr11 9653074 9653227 -139130245 - MIR SINE MIR -8 254 71 27 49 0 0 chr11 9653286 9653327 -139130145 + AT_rich Low_complexity Low_complexity 1 41 0 1270 109 5 65 chr11 9655818 9656019 -139127453 - AluJb SINE Alu -11 301 113 231 108 0 0 chr11 9656022 9656059 -139127413 + Alu SINE Alu 198 234 -65 875 145 0 0 chr11 9656063 9656187 -139127285 - AluJb SINE Alu -188 124 1 1134 180 88 0 chr11 9656574 9656760 -139126712 - MER46A DNA MER2_type -2495 236 27 1517 173 40 40 chr11 9656760 9656938 -139126534 - AluJo SINE Alu -12 300 120 2365 109 0 0 chr11 9656938 9657240 -139126232 + AluSx SINE Alu 1 302 -10 1517 173 40 40 chr11 9657240 9657361 -139126111 - AluJo SINE Alu -191 121 1 1134 180 88 0 chr11 9657361 9657391 -139126081 - MER46A DNA MER2_type -2704 27 1 39 38 0 0 chr11 9658278 9658331 -139125141 + AT_rich Low_complexity Low_complexity 1 53 0 1876 163 0 0 chr11 9659951 9660240 -139123232 - AluJb SINE Alu -21 291 3 1264 165 5 27 chr11 9660463 9660687 -139122785 - AluJb SINE Alu -9 303 85 21 36 0 0 chr11 9660804 9660832 -139122640 + AT_rich Low_complexity Low_complexity 1 28 0 199 285 123 62 chr11 9660832 9660962 -139122510 - MIR SINE MIR -1 261 124 1648 186 33 3 chr11 9660965 9661266 -139122206 + AluSx SINE Alu 3 312 0 478 171 51 68 chr11 9661291 9661408 -139122064 - MIR SINE MIR -135 127 13 296 259 73 0 chr11 9661414 9661542 -139121930 - L1ME LINE L1 -345 5817 5682 3925 148 24 6 chr11 9661774 9662579 -139120893 + L1MA4 LINE L1 4634 5443 -743 1819 55 47 8 chr11 9662579 9662832 -139120640 + L1MA2 LINE L1 6037 6301 -3 4802 123 56 2 chr11 9662878 9663701 -139119771 + L1MA4 LINE L1 5428 6294 -6 247 67 67 0 chr11 9663701 9663746 -139119726 - L1MC5 LINE L1 -311 7650 7603 2043 55 3 86 chr11 9663770 9664060 -139119412 + AluY SINE Alu 5 270 -41 189 74 0 0 chr11 9664065 9664092 -139119380 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1578 210 72 71 chr11 9664157 9664808 -139118664 - L1MC5 LINE L1 -392 7569 6918 1662 113 0 0 chr11 9664871 9665093 -139118379 - AluSg/x SINE Alu -11 301 80 6864 139 11 9 chr11 9665093 9666247 -139117225 + L1P LINE L1 3828 4986 -1160 2302 91 0 3 chr11 9666247 9666544 -139116928 + AluSc SINE Alu 1 296 -13 6864 139 11 9 chr11 9666544 9666608 -139116864 + L1P LINE L1 4986 5048 -1098 880 97 28 28 chr11 9666739 9666883 -139116589 + AluY SINE Alu 168 311 0 7928 84 22 2 chr11 9666883 9668102 -139115370 + L1PA11 LINE L1 3294 4536 -1610 4587 111 44 0 chr11 9668402 9669090 -139114382 + L1PA11 LINE L1 5455 6172 -2 951 194 87 0 chr11 9669098 9669340 -139114132 + L1ME LINE L1 5310 5572 -594 546 181 0 0 chr11 9669351 9669434 -139114038 + AluS SINE Alu 1 83 -230 1906 92 0 0 chr11 9669600 9669849 -139113623 + AluY SINE Alu 59 307 -4 2283 76 0 33 chr11 9670384 9670688 -139112784 + AluSq SINE Alu 1 294 -19 180 419 73 0 chr11 9672555 9672679 -139110793 - MIR3 SINE MIR -24 184 52 229 388 54 0 chr11 9672810 9672939 -139110533 + L2 LINE L2 2917 3052 -220 880 187 113 127 chr11 9672963 9673342 -139110130 + MLT1A2 LTR MaLR 1 374 0 2140 124 3 0 chr11 9673358 9673656 -139109816 - AluSx SINE Alu -13 299 1 7108 53 11 0 chr11 9674018 9675137 -139108335 - L1PA6 LINE L1 -7 6147 5028 271 284 30 0 chr11 9676159 9676226 -139107246 + L2 LINE L2 3150 3218 -54 349 317 156 27 chr11 9676275 9676419 -139107053 - MIR SINE MIR -6 256 132 2195 139 3 0 chr11 9676419 9676729 -139106743 + AluSx SINE Alu 1 311 -1 349 317 156 27 chr11 9676729 9676808 -139106664 - MIR SINE MIR -130 132 4 406 279 79 19 chr11 9676875 9677090 -139106382 + Charlie8 DNA MER1_type 27 254 -2163 360 288 153 0 chr11 9677429 9677540 -139105932 + L3 LINE CR1 568 695 -882 1308 164 0 23 chr11 9678403 9678622 -139104850 + AluJo SINE Alu 87 300 -12 2174 92 41 3 chr11 9679143 9679437 -139104035 + AluSg SINE Alu 1 305 -5 1238 198 8 21 chr11 9679642 9679934 -139103538 - L1M1 LINE L1 -398 5785 5494 2444 62 10 0 chr11 9680006 9680298 -139103174 - AluSx SINE Alu -17 295 1 387 150 168 9 chr11 9680312 9680425 -139103047 - HsTC2 DNA Tc2 -49 1849 1 460 246 231 10 chr11 9681055 9681258 -139102214 + L2 LINE L2 3064 3311 -2 323 119 51 0 chr11 9681735 9681794 -139101678 - LTR50 LTR ERVL 0 795 734 2140 137 0 6 chr11 9681794 9682109 -139101363 - AluSq SINE Alu 0 313 1 1879 156 0 20 chr11 9682111 9682273 -139101199 - AluJb SINE Alu -17 295 140 2260 108 0 3 chr11 9682273 9682570 -139100902 - AluSc SINE Alu -12 297 2 1879 156 0 20 chr11 9682570 9682708 -139100764 - AluJb SINE Alu -172 140 1 857 163 0 7 chr11 9682709 9682844 -139100628 - AluJb SINE Alu -178 134 1 616 156 50 124 chr11 9682846 9683064 -139100408 - LTR41 LTR ERVL -54 719 518 610 265 6 11 chr11 9683289 9683470 -139100002 - LTR41 LTR ERVL -586 187 8 22 56 0 0 chr11 9683710 9683746 -139099726 + AT_rich Low_complexity Low_complexity 1 36 0 190 250 96 67 chr11 9683752 9683856 -139099616 - L2 LINE L2 -12 3301 3195 2231 100 3 0 chr11 9683951 9684242 -139099230 + AluSp SINE Alu 3 294 -19 21 0 0 0 chr11 9684242 9684263 -139099209 + AT_rich Low_complexity Low_complexity 1 21 0 1816 115 0 0 chr11 9684443 9684687 -139098785 + AluSx SINE Alu 55 298 -14 2345 90 0 7 chr11 9685657 9685956 -139097516 - AluSq SINE Alu -16 297 1 1251 170 54 81 chr11 9686443 9686570 -139096902 - L1MB7 LINE L1 -17 6167 6038 255 61 0 0 chr11 9686570 9686603 -139096869 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 2153 141 0 3 chr11 9686603 9686916 -139096556 + AluSx SINE Alu 1 312 0 1251 170 54 81 chr11 9686916 9687122 -139096350 - L1MB7 LINE L1 -144 6040 5842 222 317 142 17 chr11 9687919 9688039 -139095433 - MIR SINE MIR -113 149 15 1635 186 7 29 chr11 9688285 9688592 -139094880 - AluJb SINE Alu -12 300 1 45 45 0 0 chr11 9689546 9689612 -139093860 + AT_rich Low_complexity Low_complexity 1 66 0 260 87 239 0 chr11 9690161 9690207 -139093265 + AluSc SINE Alu 232 288 -11 26 30 0 0 chr11 9691406 9691439 -139092033 + AT_rich Low_complexity Low_complexity 1 33 0 2311 123 0 0 chr11 9691532 9691840 -139091632 - AluSx SINE Alu -4 308 1 466 250 57 14 chr11 9692648 9692788 -139090684 + MER5B DNA MER1_type 4 149 -29 216 292 42 31 chr11 9693205 9693301 -139090171 - MIR SINE MIR 0 262 166 1989 131 3 7 chr11 9693947 9694237 -139089235 + AluSx SINE Alu 1 289 -23 205 167 0 0 chr11 9694602 9694638 -139088834 + A-rich Low_complexity Low_complexity 3 38 0 1680 191 7 33 chr11 9694770 9695074 -139088398 + AluJo SINE Alu 1 296 -16 27 0 0 0 chr11 9695588 9695615 -139087857 + AT_rich Low_complexity Low_complexity 1 27 0 1803 181 148 19 chr11 9695782 9696267 -139087205 + LTR10A LTR ERV1 1 548 -61 1709 159 41 21 chr11 9696299 9696589 -139086883 - AluJo SINE Alu -16 296 1 304 326 91 21 chr11 9696616 9696803 -139086669 + L1MEd LINE L1 2 201 -5918 1234 151 139 4 chr11 9696922 9697173 -139086299 + MER49 LTR ERV1 1 285 -638 * 2904 152 96 46 chr11 9697157 9697203 -139086269 + MER4D LTR ERV1 50 92 -811 1673 158 18 14 chr11 9697203 9697488 -139085984 - AluJb SINE Alu -10 302 17 2904 152 96 46 chr11 9697488 9698151 -139085321 + MER4D LTR ERV1 92 893 -10 224 331 0 22 chr11 9698495 9698598 -139084874 + A-rich Low_complexity Low_complexity 1 102 -31 2437 70 0 3 chr11 9698598 9698900 -139084572 + AluY SINE Alu 1 301 -10 224 331 0 22 chr11 9698900 9698932 -139084540 + A-rich Low_complexity Low_complexity 102 133 0 1998 218 110 28 chr11 9698988 9699658 -139083814 - MER50 LTR ERV1 0 734 10 1344 245 24 63 chr11 9699683 9700301 -139083171 + L1MEd LINE L1 2137 2726 -3403 1633 201 10 7 chr11 9700301 9700604 -139082868 + AluJo SINE Alu 1 304 -8 1344 245 24 63 chr11 9700604 9700684 -139082788 + L1MEd LINE L1 2726 2808 -3321 312 231 15 0 chr11 9700684 9700749 -139082723 + MIR SINE MIR 197 262 0 353 93 0 37 chr11 9701010 9701064 -139082408 - L2 LINE L2 -1 3312 3261 900 293 8 16 chr11 9703318 9703567 -139079905 - MIR SINE MIR 0 262 16 2536 37 0 7 chr11 9703902 9704196 -139079276 + AluY SINE Alu 1 292 -19 186 43 0 0 chr11 9704244 9704267 -139079205 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1645 167 48 11 chr11 9704275 9704545 -139078927 - AluJb SINE Alu -32 280 1 2598 40 0 7 chr11 9704946 9705247 -139078225 + AluY SINE Alu 1 299 -12 411 328 162 18 chr11 9705452 9705681 -139077791 + L1ME LINE L1 4869 5130 -1016 6411 120 27 64 chr11 9705698 9706325 -139077147 + Tigger3b DNA MER2_type 2 651 -2377 2092 111 6 44 chr11 9706325 9706641 -139076831 + AluSc SINE Alu 1 304 -5 2114 96 0 61 chr11 9706644 9706957 -139076515 + AluSg1 SINE Alu 1 294 -15 6411 120 27 64 chr11 9706957 9707479 -139075993 + Tigger3b DNA MER2_type 653 1193 -1835 1172 107 45 102 chr11 9707479 9707594 -139075878 - MER30 DNA MER1_type 0 230 110 1958 93 12 0 chr11 9707594 9707842 -139075630 + AluSg SINE Alu 1 251 -59 1172 107 45 102 chr11 9707842 9707864 -139075608 - MER30 DNA MER1_type -120 110 88 2206 100 10 3 chr11 9707864 9708154 -139075318 + AluSg SINE Alu 1 292 -18 1172 107 45 102 chr11 9708154 9708259 -139075213 - MER30 DNA MER1_type -142 88 1 6411 120 27 64 chr11 9708259 9708367 -139075105 + Tigger3b DNA MER2_type 1193 1217 -14 1028 233 82 35 chr11 9708458 9708565 -139074907 + L1ME LINE L1 5258 5358 -804 1714 174 41 0 chr11 9708565 9708858 -139074614 + AluJb SINE Alu 2 306 -6 1028 233 82 35 chr11 9708858 9709203 -139074269 + L1ME LINE L1 5358 5624 -538 369 0 0 0 chr11 9709203 9709244 -139074228 + (TAAAA)n Simple_repeat Simple_repeat 2 42 0 1028 233 82 35 chr11 9709244 9709274 -139074198 + L1ME LINE L1 5624 5651 -511 649 176 8 15 chr11 9709285 9709417 -139074055 + L1MCb LINE L1 579 923 -5373 717 148 0 25 chr11 9709442 9709564 -139073908 - FLAM_C SINE Alu -24 119 1 2214 124 8 3 chr11 9709564 9709927 -139073545 + L1MCb LINE L1 907 1271 -5293 1383 271 5 0 chr11 9709924 9710350 -139073122 + L1M4 LINE L1 4816 5246 -900 * 1315 166 0 4 chr11 9710350 9710579 -139072893 + L1MC1 LINE L1 6105 6332 -1 236 366 30 0 chr11 9710595 9710726 -139072746 - L2 LINE L2 -1190 2124 1990 2409 93 0 0 chr11 9710726 9711028 -139072444 + AluSc SINE Alu 1 302 -7 2216 128 0 3 chr11 9711340 9711645 -139071827 + AluSx SINE Alu 1 304 -8 1818 171 47 0 chr11 9712145 9712443 -139071029 - AluJo SINE Alu 0 312 1 26 30 0 0 chr11 9712780 9712813 -139070659 + AT_rich Low_complexity Low_complexity 1 33 0 2302 108 0 0 chr11 9712885 9713191 -139070281 - AluSx SINE Alu -6 306 1 333 260 125 82 chr11 9713327 9713535 -139069937 + L2 LINE L2 2237 2453 -861 531 259 89 57 chr11 9713798 9713907 -139069565 - HAL1 LINE L1 -2222 285 181 1852 152 3 59 chr11 9713907 9714230 -139069242 - AluJb SINE Alu -7 305 1 531 259 89 57 chr11 9714230 9714305 -139069167 - HAL1 LINE L1 -2326 181 110 2364 71 0 14 chr11 9714305 9714601 -139068871 - AluY SINE Alu -19 292 1 531 259 89 57 chr11 9714601 9714662 -139068810 - HAL1 LINE L1 -2397 110 31 504 139 0 0 chr11 9714812 9714898 -139068574 - AluSp SINE Alu 0 313 228 1906 170 68 32 chr11 9714898 9715339 -139068133 - LTR2B LTR ERV1 0 490 34 1669 112 4 9 chr11 9715361 9715593 -139067879 - AluSp SINE Alu -82 231 1 226 170 0 0 chr11 9715755 9715802 -139067670 + LTR66 LTR ERVL 394 440 -170 835 197 16 42 chr11 9716569 9716623 -139066849 + MER5A DNA MER1_type 2 56 -133 2287 101 3 0 chr11 9716623 9716931 -139066541 - AluSp SINE Alu -4 309 1 835 197 16 42 chr11 9716931 9717069 -139066403 + MER5A DNA MER1_type 56 189 0 1807 178 3 16 chr11 9717525 9717840 -139065632 + AluJo SINE Alu 1 311 -1 3879 140 18 2 chr11 9718258 9718859 -139064613 + LTR36 LTR ERV1 1 611 0 234 0 0 0 chr11 9718870 9718896 -139064576 + (CAA)n Simple_repeat Simple_repeat 2 27 0 832 192 31 104 chr11 9719669 9719690 -139063782 - MER33 DNA MER1_type -2261 324 303 2245 132 0 52 chr11 9719690 9719986 -139063486 + MER47A DNA MER2_type 1 311 -2012 2183 99 0 0 chr11 9719986 9720292 -139063180 - AluSx SINE Alu 0 306 1 1918 175 0 6 chr11 9720295 9720609 -139062863 - AluJb SINE Alu 0 312 1 2245 132 0 52 chr11 9720609 9720693 -139062779 + MER47A DNA MER2_type 313 366 0 832 192 31 104 chr11 9720693 9720861 -139062611 - MER33 DNA MER1_type -2282 303 165 1988 91 51 7 chr11 9720861 9721136 -139062336 - AluSp SINE Alu -26 287 1 832 192 31 104 chr11 9721136 9721263 -139062209 - MER33 DNA MER1_type -2420 165 30 569 254 47 22 chr11 9722012 9723015 -139060457 + L1ME1 LINE L1 2676 3786 -2360 430 235 130 9 chr11 9723015 9723130 -139060342 + FLAM_C SINE Alu 3 131 -2 569 254 47 22 chr11 9723130 9723392 -139060080 + L1ME1 LINE L1 3786 4040 -2106 1935 225 31 11 chr11 9723437 9724286 -139059186 + L1ME1 LINE L1 4906 5767 -399 7953 104 20 16 chr11 9724286 9725494 -139057978 + HSMAR1 DNA Mariner 11 1223 -64 1460 88 18 14 chr11 9725509 9725726 -139057746 + L1PA10 LINE L1 5950 6167 -1 537 79 0 0 chr11 9725742 9725818 -139057654 + HSMAR1 DNA Mariner 1212 1287 0 639 238 58 56 chr11 9725818 9726171 -139057301 + L1ME1 LINE L1 5781 6005 -161 34944 85 6 34 chr11 9726193 9729529 -139053943 + L1PA6 LINE L1 12 3196 -2958 744 112 26 0 chr11 9729529 9729645 -139053827 + AluY SINE Alu 168 286 -25 34944 85 6 34 chr11 9729645 9732452 -139051020 + L1PA6 LINE L1 3196 6082 -72 447 232 10 0 chr11 9732520 9732619 -139050853 - MSTD LTR MaLR -294 102 3 590 237 29 29 chr11 9732679 9732852 -139050620 + HAL1 LINE L1 1292 1464 -1043 300 311 73 24 chr11 9732872 9733464 -139050008 + L1ME LINE L1 3813 4433 -1713 2259 82 3 7 chr11 9733570 9733875 -139049597 + AluY SINE Alu 1 304 -7 386 348 40 6 chr11 9734369 9734547 -139048925 + L1ME LINE L1 4769 4952 -1194 2049 96 7 7 chr11 9734914 9735233 -139048239 - AluSg SINE Alu 0 319 1 360 259 24 0 chr11 9735328 9735413 -139048059 - L2 LINE L2 0 3313 3227 313 302 42 0 chr11 9735487 9735583 -139047889 + L1ME LINE L1 5494 5593 -528 1718 251 24 57 chr11 9735709 9735959 -139047513 + MER119 DNA MER1_type 6 263 -320 2448 51 0 7 chr11 9735959 9736251 -139047221 + AluY SINE Alu 1 290 -21 1718 251 24 57 chr11 9736251 9736597 -139046875 + MER119 DNA MER1_type 263 582 -1 426 261 96 56 chr11 9736795 9736870 -139046602 + L1ME3A LINE L1 3419 3490 -2656 1702 141 19 58 chr11 9736870 9737183 -139046289 + AluJo SINE Alu 1 301 -11 426 261 96 56 chr11 9737183 9737356 -139046116 + L1ME3A LINE L1 3490 3677 -2469 295 262 47 13 chr11 9737415 9737564 -139045908 + L1ME3A LINE L1 3904 4057 -2089 698 278 98 36 chr11 9737622 9737920 -139045552 + L1ME3A LINE L1 4154 4432 -1714 1557 167 71 0 chr11 9737920 9738189 -139045283 - AluJb SINE Alu -24 288 1 698 278 98 36 chr11 9738189 9738473 -139044999 + L1ME3A LINE L1 4432 4772 -1374 1244 143 0 43 chr11 9738474 9738859 -139044613 + AluJb SINE Alu 91 466 0 1330 285 49 18 chr11 9738878 9739998 -139043474 + L1ME3A LINE L1 4795 5954 -216 3869 170 31 13 chr11 9740397 9740661 -139042811 + L1PA16 LINE L1 4395 4653 -1513 1839 167 3 3 chr11 9740661 9740954 -139042518 + AluJo SINE Alu 2 294 -18 3869 170 31 13 chr11 9740954 9742152 -139041320 + L1PA16 LINE L1 4653 5874 -292 349 207 12 0 chr11 9742154 9742236 -139041236 + L1PA16 LINE L1 6082 6164 -2 2280 109 3 3 chr11 9742276 9742589 -139040883 - AluSp SINE Alu 0 313 1 269 302 55 76 chr11 9743049 9743340 -139040132 + ERVL LTR ERVL 306 590 -5174 503 265 168 5 chr11 9743340 9743525 -139039947 + MLT2F LTR ERVL 1 215 -448 4457 145 48 4 chr11 9743526 9744284 -139039188 + L1MB3 LINE L1 5386 6176 -7 1564 232 50 13 chr11 9744310 9744763 -139038709 - L1MC4 LINE L1 -1122 6920 6431 210 191 0 0 chr11 9744887 9744929 -139038543 + GA-rich Low_complexity Low_complexity 3 44 0 319 324 9 0 chr11 9744997 9745108 -139038364 - L1 LINE L1 -1780 4366 4255 620 316 129 2 chr11 9745204 9745600 -139037872 - L1 LINE L1 -2049 4097 3652 405 108 40 0 chr11 9745767 9745841 -139037631 + L1MA8 LINE L1 6211 6287 -4 485 321 38 11 chr11 9746010 9746194 -139037278 - L3 LINE CR1 -6 1571 1383 223 290 39 29 chr11 9746157 9746262 -139037210 + MER5A DNA MER1_type 19 130 -53 * 206 378 0 14 chr11 9746298 9746372 -139037100 - MER5B DNA MER1_type 0 178 106 218 224 0 0 chr11 9746710 9746759 -139036713 - L2 LINE L2 0 3313 3265 319 321 44 0 chr11 9746859 9746996 -139036476 - L2 LINE L2 -182 3090 2948 193 327 40 59 chr11 9747121 9747323 -139036149 - L2 LINE L2 -560 2754 2557 2148 272 80 25 chr11 9747763 9748077 -139035395 - HAL1 LINE L1 -1716 791 496 330 67 0 0 chr11 9748077 9748122 -139035350 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 2148 272 80 25 chr11 9748122 9748556 -139034916 - HAL1 LINE L1 -2011 496 2 2968 79 48 33 chr11 9748656 9749003 -139034469 + L1PB1 LINE L1 5420 5777 -374 2257 106 20 0 chr11 9749003 9749304 -139034168 + AluSg1 SINE Alu 1 307 -2 2968 79 48 33 chr11 9749304 9749410 -139034062 + L1PB1 LINE L1 5777 5880 -271 27 0 0 0 chr11 9749747 9749774 -139033698 + AT_rich Low_complexity Low_complexity 1 27 0 216 0 0 0 chr11 9750520 9750544 -139032928 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 386 256 76 40 chr11 9751104 9751381 -139032091 - L1ME4a LINE L1 -122 5999 5713 1035 282 72 52 chr11 9751875 9752389 -139031083 - L1ME3A LINE L1 -278 5892 5369 21 0 0 0 chr11 9752859 9752880 -139030592 + AT_rich Low_complexity Low_complexity 1 21 0 2224 118 0 0 chr11 9753294 9753598 -139029874 - AluY SINE Alu -7 304 1 2490 24 7 3 chr11 9754193 9754483 -139028989 - AluY SINE Alu -6 305 15 980 199 12 0 chr11 9755827 9755998 -139027474 - FAM SINE Alu -2 173 1 1086 252 84 61 chr11 9756027 9756516 -139026956 - L1ME3A LINE L1 -925 5221 4708 2192 105 0 0 chr11 9756516 9756802 -139026670 - AluSg SINE Alu -24 286 1 1086 252 84 61 chr11 9756802 9757047 -139026425 - L1ME3A LINE L1 -1438 4708 4470 2088 146 0 0 chr11 9759022 9759330 -139024142 + AluSx SINE Alu 1 308 -4 1666 161 11 0 chr11 9759808 9760087 -139023385 + AluJo SINE Alu 1 282 -30 24 32 0 0 chr11 9760588 9760619 -139022853 + AT_rich Low_complexity Low_complexity 1 31 0 1539 139 0 8 chr11 9760712 9760957 -139022515 - L1PB4 LINE L1 -2 6154 5912 2217 83 48 0 chr11 9761137 9761427 -139022045 - AluSp SINE Alu -9 304 1 578 248 45 20 chr11 9761427 9761620 -139021852 - L1MD3 LINE L1 -7 7988 7788 2189 117 0 16 chr11 9761914 9762230 -139021242 - AluSx SINE Alu -1 311 1 365 245 91 7 chr11 9762310 9762453 -139021019 + L1M4 LINE L1 2448 2602 -3544 * 687 159 165 0 chr11 9762451 9762627 -139020845 + L1MB7 LINE L1 5199 5403 -743 3083 163 21 44 chr11 9762648 9762930 -139020542 + L1MB7 LINE L1 5544 5831 -353 2267 69 0 13 chr11 9762930 9763235 -139020237 + AluY SINE Alu 1 301 -10 3083 163 21 44 chr11 9763235 9763478 -139019994 + L1MB7 LINE L1 5831 6078 -106 2174 98 4 0 chr11 9763478 9763753 -139019719 + AluSp SINE Alu 2 277 -36 366 85 0 0 chr11 9763755 9763814 -139019658 + (TCTG)n Simple_repeat Simple_repeat 2 60 0 233 29 29 0 chr11 9763815 9763849 -139019623 + (TA)n Simple_repeat Simple_repeat 1 35 0 3083 163 21 44 chr11 9763849 9763973 -139019499 + L1MB7 LINE L1 6078 6184 0 338 265 143 0 chr11 9764022 9764120 -139019352 + L1ME3A LINE L1 6006 6117 -53 2261 262 173 22 chr11 9764530 9765722 -139017750 + L2 LINE L2 1930 3287 -26 367 358 51 11 chr11 9765858 9766034 -139017438 - L3b LINE CR1 -70 1513 1331 2046 71 4 0 chr11 9766054 9766309 -139017163 - AluY SINE Alu -16 295 40 181 333 72 14 chr11 9766490 9766559 -139016913 + MIR SINE MIR 39 111 -97 281 374 81 17 chr11 9766736 9766910 -139016562 - L3 LINE CR1 -1292 285 101 21 36 0 0 chr11 9767016 9767044 -139016428 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr11 9767067 9767092 -139016380 + AT_rich Low_complexity Low_complexity 1 25 0 1808 183 3 10 chr11 9767238 9767550 -139015922 + AluJb SINE Alu 1 310 -2 515 291 58 28 chr11 9767562 9767889 -139015583 + L1M4 LINE L1 4589 4925 -1221 693 253 16 31 chr11 9767902 9768096 -139015376 + MIR SINE MIR 25 215 -47 183 42 0 0 chr11 9768096 9768120 -139015352 + (CA)n Simple_repeat Simple_repeat 2 25 0 2250 108 0 7 chr11 9768318 9768624 -139014848 - AluSg SINE Alu -6 304 1 29 0 0 0 chr11 9771332 9771361 -139012111 + AT_rich Low_complexity Low_complexity 1 29 0 1600 194 11 0 chr11 9771818 9772102 -139011370 - AluJo SINE Alu -25 287 1 465 118 24 0 chr11 9772136 9772221 -139011251 + L1MB4 LINE L1 6094 6180 0 274 319 0 0 chr11 9772359 9772431 -139011041 + L2 LINE L2 2552 2623 -691 1113 298 32 34 chr11 9772431 9772898 -139010574 + L2 LINE L2 2848 3313 0 23 0 0 0 chr11 9773539 9773562 -139009910 + AT_rich Low_complexity Low_complexity 1 23 0 243 0 0 0 chr11 9773726 9773753 -139009719 + (CA)n Simple_repeat Simple_repeat 2 28 0 1804 78 0 41 chr11 9775091 9775336 -139008136 - AluY SINE Alu -76 235 1 6746 69 6 2 chr11 9775336 9776487 -139006985 + L1PA6 LINE L1 5001 6154 0 458 279 46 9 chr11 9776627 9776794 -139006678 - MIR3 SINE MIR -28 180 3 227 176 28 190 chr11 9778303 9778445 -139005027 + MIR SINE MIR 114 232 -30 29 60 0 0 chr11 9778915 9778965 -139004507 + AT_rich Low_complexity Low_complexity 1 50 0 2268 261 69 65 chr11 9779729 9780998 -139002474 + L1MC4 LINE L1 6768 8042 0 1890 225 33 18 chr11 9783478 9783641 -138999831 + L1M4 LINE L1 2710 2869 -3277 1706 197 7 3 chr11 9783641 9783936 -138999536 - AluJo SINE Alu -16 296 1 1890 225 33 18 chr11 9783936 9784372 -138999100 + L1M4 LINE L1 2869 3318 -2828 1588 81 88 59 chr11 9784372 9784644 -138998828 - LTR66 LTR ERVL 0 610 331 253 0 0 57 chr11 9784645 9784673 -138998799 - LTR66 LTR ERVL -210 400 375 244 253 123 12 chr11 9784673 9784816 -138998656 + LTR10B LTR ERV1 1 250 -297 607 189 30 30 chr11 9784886 9785018 -138998454 + LTR10B LTR ERV1 416 547 0 2834 86 0 18 chr11 9785018 9785229 -138998243 - LTR66 LTR ERVL -234 376 174 2200 107 7 0 chr11 9785229 9785529 -138997943 - AluSx SINE Alu -10 302 1 2834 86 0 18 chr11 9785529 9785700 -138997772 - LTR66 LTR ERVL -436 174 1 5095 240 34 20 chr11 9785704 9785959 -138997513 + L1M4 LINE L1 3315 3565 -2581 1431 194 81 6 chr11 9785959 9786279 -138997193 - MER2 DNA MER2_type 0 344 1 5095 240 34 20 chr11 9786279 9787547 -138995925 + L1M4 LINE L1 3565 4859 -1287 234 258 15 15 chr11 9787551 9787617 -138995855 + MIR SINE MIR 196 261 -1 603 258 0 8 chr11 9788145 9788277 -138995195 + MER8 DNA MER2_type 6 136 -103 278 222 16 0 chr11 9788378 9788441 -138995031 + Charlie1 DNA MER1_type 58 121 -2640 * 807 211 26 0 chr11 9788438 9788594 -138994878 + Charlie1 DNA MER1_type 1460 1619 -1142 3379 181 88 25 chr11 9788610 9789387 -138994085 + Charlie1 DNA MER1_type 1809 2652 -109 1981 145 3 3 chr11 9789387 9789683 -138993789 + AluSq SINE Alu 1 296 -17 3379 181 88 25 chr11 9789683 9789800 -138993672 + Charlie1 DNA MER1_type 2652 2760 -1 1890 128 38 85 chr11 9790390 9790788 -138992684 - Tigger7 DNA MER2_type -4 2583 2205 1414 171 75 4 chr11 9790774 9791026 -138992446 - Tigger7 DNA MER2_type -461 272 3 * 302 283 133 18 chr11 9792809 9792922 -138990550 - MIR SINE MIR -63 145 20 207 100 0 0 chr11 9793066 9793096 -138990376 + (TATG)n Simple_repeat Simple_repeat 4 33 0 570 243 79 26 chr11 9793105 9793372 -138990100 - L1ME4a LINE L1 -196 5925 5645 1327 169 3 112 chr11 9793673 9794004 -138989468 + AluJb SINE Alu 1 295 -7 5048 132 24 40 chr11 9794565 9794965 -138988507 + L1PB3 LINE L1 5083 5488 -666 2021 130 33 0 chr11 9794965 9795265 -138988207 - AluSx SINE Alu 0 312 3 5048 132 24 40 chr11 9795265 9795590 -138987882 + L1PB3 LINE L1 5488 5817 -337 432 0 0 0 chr11 9795590 9795638 -138987834 + (CA)n Simple_repeat Simple_repeat 2 49 0 5048 132 24 40 chr11 9795638 9796005 -138987467 + L1PB3 LINE L1 5817 6154 0 2670 201 0 0 chr11 9796171 9796699 -138986773 - L1P LINE L1 -1358 4788 4261 * 10785 119 19 6 chr11 9796697 9798247 -138985225 + L1PA12 LINE L1 1013 2582 -4999 1728 222 98 18 chr11 9798370 9798888 -138984584 + L1ME1 LINE L1 5608 6324 -10 2083 133 3 3 chr11 9799301 9799609 -138983863 - AluSg SINE Alu -2 308 1 1036 175 0 0 chr11 9799692 9799863 -138983609 + FAM SINE Alu 5 175 0 409 100 0 43 chr11 9800005 9800075 -138983397 - AluYb8 SINE Alu -1 307 241 236 202 12 95 chr11 9800023 9800107 -138983365 + AluJo/FRAM SINE Alu 183 259 -43 * 1535 123 54 0 chr11 9800833 9801094 -138982378 + L1MA8 LINE L1 6013 6287 -4 1564 192 3 27 chr11 9801312 9801609 -138981863 - AluJo SINE Alu -22 290 1 256 268 18 0 chr11 9801894 9801950 -138981522 + MER20B DNA MER1_type 84 140 -643 1989 138 0 3 chr11 9802159 9802463 -138981009 + AluSx SINE Alu 3 305 -7 389 353 40 20 chr11 9802834 9803086 -138980386 + L1MEd LINE L1 594 850 -5269 549 309 57 45 chr11 9803108 9803501 -138979971 + L1M3d LINE L1 1 1552 -5475 1344 217 77 68 chr11 9803629 9804173 -138979299 + L1ME2 LINE L1 5500 6102 -62 2575 191 18 0 chr11 9804182 9804678 -138978794 + L1MB7 LINE L1 5652 6156 -28 861 222 199 73 chr11 9804690 9805308 -138978164 + L1MC5 LINE L1 6837 7532 -429 297 211 119 108 chr11 9805416 9805601 -138977871 + L1ME3A LINE L1 5977 6163 -7 252 252 0 87 chr11 9805678 9805781 -138977691 - MLT1J LTR MaLR -58 453 360 232 263 100 25 chr11 9805849 9805929 -138977543 + L2 LINE L2 3186 3271 -1 21 0 0 0 chr11 9806028 9806049 -138977423 + AT_rich Low_complexity Low_complexity 1 21 0 4277 152 10 15 chr11 9807363 9808078 -138975394 - MER50 LTR ERV1 -23 711 1 416 198 0 85 chr11 9808423 9808529 -138974943 + MER34B LTR ERV1 467 583 -2 344 347 41 0 chr11 9808878 9808999 -138974473 - L2 LINE L2 -9 3263 3138 23 0 0 0 chr11 9809232 9809255 -138974217 + AT_rich Low_complexity Low_complexity 1 23 0 223 389 14 0 chr11 9809712 9809784 -138973688 + L2 LINE L2 3101 3173 -99 310 216 227 0 chr11 9810530 9810618 -138972854 + L2 LINE L2 3204 3311 -2 2341 71 0 0 chr11 9811273 9811580 -138971892 + AluY SINE Alu 2 308 0 1763 106 102 0 chr11 9811981 9812246 -138971226 + AluSx SINE Alu 1 292 -20 578 146 50 19 chr11 9812567 9812730 -138970742 + MLT1D LTR MaLR 236 505 0 289 262 61 55 chr11 9812752 9812893 -138970579 - L1MD3 LINE L1 -11 7984 7839 1840 145 0 28 chr11 9812893 9813210 -138970262 - AluJb SINE Alu 0 309 1 289 262 61 55 chr11 9813210 9813231 -138970241 - L1MD3 LINE L1 -156 7839 7820 2052 249 90 84 chr11 9813231 9814151 -138969321 + L1MC4 LINE L1 6084 7093 -808 189 0 0 0 chr11 9814151 9814172 -138969300 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 2052 249 90 84 chr11 9814172 9814482 -138968990 + L1MC4 LINE L1 7093 7400 -501 406 301 65 56 chr11 9814458 9814764 -138968708 + L1M4 LINE L1 22 624 -6231 * 1552 277 65 52 chr11 9814960 9815616 -138967856 + L1M4 LINE L1 1004 1650 -5309 1724 176 13 10 chr11 9815616 9815918 -138967554 + AluJo SINE Alu 1 303 -9 1552 277 65 52 chr11 9815918 9816539 -138966933 + L1M4 LINE L1 1650 2312 -4647 1741 182 30 3 chr11 9816539 9816841 -138966631 + AluJb SINE Alu 1 310 -2 1552 277 65 52 chr11 9816841 9816932 -138966540 + L1M4 LINE L1 2312 2400 -4559 7168 95 20 2 chr11 9816989 9818795 -138964677 + L1PA7 LINE L1 4319 6149 -5 13103 158 31 17 chr11 9818991 9822347 -138961125 - MER50-int LTR ERV1 -1323 3894 1 4374 148 14 15 chr11 9822383 9823106 -138960366 - MER50 LTR ERV1 -12 722 1 1969 117 139 115 chr11 9823107 9823603 -138959869 - MER4A LTR ERV1 -156 508 1 220 416 0 0 chr11 9823870 9823971 -138959501 - L2 LINE L2 -619 2695 2595 1935 112 11 0 chr11 9824392 9824669 -138958803 + AluY SINE Alu 1 280 -31 284 221 0 0 chr11 9824744 9824821 -138958651 + L1M4 LINE L1 2982 3058 -4080 383 175 24 22 chr11 9824831 9824922 -138958550 + Tigger5 DNA MER2_type 4 2323 0 297 221 53 0 chr11 9824945 9825040 -138958432 + L1M4 LINE L1 3073 3172 -3785 506 214 87 53 chr11 9825776 9825982 -138957490 + L1MC5 LINE L1 7638 7850 -111 22 0 0 30 chr11 9826214 9826231 -138957241 + AT_rich Low_complexity Low_complexity 1 18 -14 2283 81 0 7 chr11 9826231 9826528 -138956944 + AluY SINE Alu 1 295 -16 22 0 0 30 chr11 9826528 9826543 -138956929 + AT_rich Low_complexity Low_complexity 18 32 0 23 0 0 0 chr11 9827343 9827366 -138956106 + AT_rich Low_complexity Low_complexity 1 23 0 1058 320 139 25 chr11 9827522 9828132 -138955340 + L3 LINE CR1 895 1574 -3 21 36 0 0 chr11 9828209 9828237 -138955235 + AT_rich Low_complexity Low_complexity 1 28 0 2103 112 7 3 chr11 9828436 9828721 -138954751 + AluSx SINE Alu 1 286 -26 480 18 0 0 chr11 9828721 9828778 -138954694 + (CATA)n Simple_repeat Simple_repeat 2 58 0 386 292 93 62 chr11 9829164 9829517 -138953955 - MLT1J LTR MaLR -43 468 105 2544 44 0 0 chr11 9830268 9830561 -138952911 - AluY SINE Alu -18 293 1 216 328 109 17 chr11 9831047 9831166 -138952306 + MIR3 SINE MIR 9 138 -70 27 29 0 0 chr11 9831256 9831290 -138952182 + AT_rich Low_complexity Low_complexity 1 34 0 2398 75 0 3 chr11 9831369 9831676 -138951796 + AluSg SINE Alu 1 306 -4 415 217 0 0 chr11 9831691 9831783 -138951689 - MER113 DNA MER1_type? -415 106 15 2150 109 3 31 chr11 9832101 9832421 -138951051 + AluSq SINE Alu 3 313 0 2199 115 0 13 chr11 9832999 9833304 -138950168 - AluSx SINE Alu -11 301 1 2669 33 0 3 chr11 9833561 9833866 -138949606 - AluY SINE Alu -7 304 1 229 313 52 10 chr11 9834676 9834772 -138948700 + MIR3 SINE MIR 103 202 -6 670 130 0 0 chr11 9835887 9835987 -138947485 + L1PB3 LINE L1 6041 6140 -14 25 83 0 0 chr11 9835990 9836050 -138947422 + AT_rich Low_complexity Low_complexity 1 60 0 247 283 0 0 chr11 9836947 9837007 -138946465 + MIR3 SINE MIR 146 205 -3 584 248 50 0 chr11 9837969 9838110 -138945362 - MIR3 SINE MIR -23 185 38 14257 197 58 10 chr11 9838605 9842437 -138941035 - L1PB1 LINE L1 0 6867 2602 2058 133 0 10 chr11 9842437 9842755 -138940717 + AluSx SINE Alu 1 312 0 14257 197 58 10 chr11 9842755 9845485 -138937987 - L1PB1 LINE L1 -4265 2602 6 1149 163 32 0 chr11 9846596 9846817 -138936655 - L1PA16 LINE L1 -9 6157 5930 2070 76 73 0 chr11 9847195 9847470 -138936002 + AluY SINE Alu 2 296 -15 1697 139 12 111 chr11 9847624 9847780 -138935692 + AluJo SINE Alu 1 108 -204 2303 102 7 0 chr11 9847780 9848074 -138935398 + AluSx SINE Alu 1 296 -16 1697 139 12 111 chr11 9848074 9848249 -138935223 + AluJo SINE Alu 108 299 -13 22 0 0 0 chr11 9848654 9848676 -138934796 + AT_rich Low_complexity Low_complexity 1 22 0 375 198 57 47 chr11 9848773 9848879 -138934593 - MIR SINE MIR -20 242 136 1771 117 0 12 chr11 9849045 9849302 -138934170 - AluJb SINE Alu -14 298 45 594 174 8 25 chr11 9849303 9849424 -138934048 + AluJb SINE Alu 189 307 -5 201 222 32 63 chr11 9849595 9849658 -138933814 - L2 LINE L2 -1 3312 3252 1914 162 0 19 chr11 9850549 9850858 -138932614 - AluJo SINE Alu -9 303 1 8609 108 35 3 chr11 9951208 9952726 -138830746 + MER57-int LTR ERV1 5546 7148 -389 600 123 44 0 chr11 9952726 9952840 -138830632 + LTR54B LTR ERV1 3 121 -377 198 0 0 0 chr11 9953593 9953615 -138829857 + (TA)n Simple_repeat Simple_repeat 2 23 0 341 335 74 7 chr11 9953701 9954076 -138829396 + LTR16B LTR ERVL 18 455 -8 195 235 0 0 chr11 9954764 9954798 -138828674 + L2 LINE L2 3008 3041 -272 985 105 42 0 chr11 9955298 9955441 -138828031 + AluSp SINE Alu 1 149 -164 6956 157 49 34 chr11 9955544 9956250 -138827222 - MER51-int LTR ERV1 -2478 5338 4644 2324 85 0 3 chr11 9956250 9956555 -138826917 - AluY SINE Alu -7 304 1 6956 157 49 34 chr11 9956555 9957421 -138826051 - MER51-int LTR ERV1 -3172 4644 2410 1266 150 19 0 chr11 9957421 9957634 -138825838 - L1M1 LINE L1 -7333 232 16 2068 115 0 50 chr11 9957648 9957971 -138825501 - AluSx SINE Alu -5 307 1 593 246 85 71 chr11 9957998 9958282 -138825190 - L1M4 LINE L1 -2283 3863 3570 1462 193 27 48 chr11 9958282 9958577 -138824895 - AluJo SINE Alu -23 289 1 593 246 85 71 chr11 9958577 9958715 -138824757 - L1M4 LINE L1 -2576 3570 3435 2226 117 7 0 chr11 9958789 9959098 -138824374 + AluSq SINE Alu 3 313 0 3560 227 26 62 chr11 9959100 9960003 -138823469 - L1MA10 LINE L1 -44 6992 6058 724 236 6 13 chr11 9960003 9960160 -138823312 - FAM SINE Alu -19 156 1 3560 227 26 62 chr11 9960160 9960269 -138823203 - L1MA10 LINE L1 -978 6058 6031 1815 168 7 0 chr11 9960269 9960567 -138822905 - AluJb SINE Alu -12 300 1 3560 227 26 62 chr11 9960567 9960752 -138822720 - L1MA10 LINE L1 -1005 6031 5841 2350 196 35 2 chr11 9960748 9961268 -138822204 + L1 LINE L1 4595 5131 -1015 * 5136 238 60 10 chr11 9961268 9963238 -138820234 - L1MA10 LINE L1 -2289 4559 2493 303 321 63 79 chr11 9963283 9963473 -138819999 - L1MA10 LINE L1 -5454 1395 1209 606 249 143 19 chr11 9963684 9964052 -138819420 - L1M4 LINE L1 -2689 3457 3030 2037 128 7 10 chr11 9964052 9964349 -138819123 - AluSx SINE Alu -16 296 1 606 249 143 19 chr11 9964349 9964398 -138819074 - L1M4 LINE L1 -3116 3030 2988 599 220 0 0 chr11 9964498 9964618 -138818854 + AluJb SINE Alu 182 301 0 1360 216 7 38 chr11 9964698 9964989 -138818483 + AluJo SINE Alu 1 282 -30 2240 87 0 20 chr11 9964989 9965289 -138818183 - AluSc SINE Alu -13 296 3 1855 151 0 0 chr11 9965628 9965906 -138817566 + AluSx SINE Alu 35 312 0 513 230 8 50 chr11 9966129 9966394 -138817078 - L1MA10 LINE L1 -5 6297 5916 575 250 0 0 chr11 9966423 9966555 -138816917 - L1ME LINE L1 -370 5796 5665 296 134 41 103 chr11 9966621 9966655 -138816817 + L1M4 LINE L1 2271 2306 -3840 1790 184 0 7 chr11 9966655 9966960 -138816512 + AluJb SINE Alu 1 303 -9 296 134 41 103 chr11 9966960 9967022 -138816450 + L1M4 LINE L1 2306 2361 -3785 227 263 59 48 chr11 9967023 9967160 -138816312 + L1M4 LINE L1 2390 2531 -3615 2198 138 0 0 chr11 9967160 9967472 -138816000 + AluSx SINE Alu 1 312 0 227 263 59 48 chr11 9967472 9967520 -138815952 + L1M4 LINE L1 2531 2577 -3569 332 248 8 0 chr11 9967568 9967685 -138815787 + (TATATG)n Simple_repeat Simple_repeat 3 120 0 714 276 27 0 chr11 9967697 9967998 -138815474 + L1M4 LINE L1 2670 2978 -3168 909 35 0 0 chr11 9969447 9969560 -138813912 - L1P LINE L1 -6033 113 1 11434 156 33 19 chr11 9969565 9969739 -138813733 + L1MA3 LINE L1 2746 2916 -3389 2105 130 0 3 chr11 9969739 9970040 -138813432 + AluSx SINE Alu 1 300 -12 11434 156 33 19 chr11 9970040 9970054 -138813418 + L1MA3 LINE L1 2916 2928 -3377 2244 89 3 3 chr11 9970054 9970347 -138813125 + AluSx SINE Alu 1 293 -19 11434 156 33 19 chr11 9970347 9973662 -138809810 + L1MA3 LINE L1 2928 6305 0 597 260 40 35 chr11 9974448 9974648 -138808824 - L2 LINE L2 -4 3309 3109 2218 122 0 0 chr11 9974673 9974976 -138808496 - AluSx SINE Alu -9 303 1 231 36 0 0 chr11 9975115 9975143 -138808329 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1095 199 5 23 chr11 9975145 9975361 -138808111 - AluJb SINE Alu -31 281 70 252 0 0 0 chr11 9975724 9975752 -138807720 + (TG)n Simple_repeat Simple_repeat 1 28 0 1917 154 4 0 chr11 9975753 9976033 -138807439 - AluSx SINE Alu -31 281 1 214 358 0 81 chr11 9976413 9976536 -138806936 - L3 LINE CR1 -7 1570 1458 383 297 18 27 chr11 9976555 9976666 -138806806 - L2 LINE L2 -4 3268 3159 324 319 183 0 chr11 9978356 9978547 -138804925 + L3 LINE CR1 766 991 -586 504 273 36 7 chr11 9978788 9978927 -138804545 + MIR SINE MIR 7 149 -113 1925 256 109 24 chr11 9979250 9980140 -138803332 + L1M4 LINE L1 2654 3467 -2679 252 0 0 0 chr11 9980140 9980168 -138803304 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2097 91 29 4 chr11 9980171 9980446 -138803026 - AluSx SINE Alu -30 282 1 1925 256 109 24 chr11 9980446 9980518 -138802954 + L1M4 LINE L1 3468 3702 -2444 2695 234 36 9 chr11 9980524 9981319 -138802153 + L1M4 LINE L1 3904 4720 -1426 590 269 145 28 chr11 9981371 9981620 -138801852 - MER21B LTR ERV1 -57 806 529 655 244 134 38 chr11 9981660 9981870 -138801602 - MER21B LTR ERV1 -553 310 122 2199 127 30 43 chr11 9981870 9982239 -138801233 + THE1B LTR MaLR 1 364 0 11691 94 4 1 chr11 9982240 9983814 -138799658 + THE1B-int LTR MaLR 2 1580 0 2378 116 30 25 chr11 9983814 9984176 -138799296 + THE1B LTR MaLR 1 364 0 655 244 134 38 chr11 9984176 9984200 -138799272 - MER21B LTR ERV1 -740 123 50 306 276 13 0 chr11 9984204 9984280 -138799192 - MER21B LTR ERV1 -768 95 19 4330 118 15 126 chr11 9984301 9985852 -138797620 + pTR5 LTR ERV1 743 2606 0 360 240 13 0 chr11 9985857 9985932 -138797540 - MER21B LTR ERV1 -773 90 15 956 221 49 49 chr11 9985955 9986304 -138797168 + L1M4 LINE L1 4796 5144 -1002 257 360 54 27 chr11 9986797 9986944 -138796528 - MIR3 SINE MIR -57 151 1 6606 104 77 14 chr11 9987293 9988431 -138795041 + L1M1 LINE L1 2337 3546 -4019 1303 213 39 3 chr11 9988434 9988716 -138794756 + L1M1 LINE L1 3870 4161 -3404 300 62 31 31 chr11 9988725 9988790 -138794682 + (TTTTTG)n Simple_repeat Simple_repeat 2 66 0 41814 35 21 2 chr11 9988793 9994722 -138788750 - L1PA3 LINE L1 -4 6151 103 270 174 0 0 chr11 9994822 9994868 -138788604 + Alu SINE Alu 250 295 -7 791 230 97 18 chr11 9994880 9995106 -138788366 - L1ME LINE L1 -640 5526 5283 1848 140 9 43 chr11 9995142 9995154 -138788318 - AluJo SINE Alu 0 312 301 204 40 0 0 chr11 9995154 9995179 -138788293 + (TCCC)n Simple_repeat Simple_repeat 1 25 0 1848 140 9 43 chr11 9995179 9995355 -138788117 - AluJo SINE Alu -11 301 137 2341 59 45 0 chr11 9995355 9995641 -138787831 - AluY SINE Alu -12 299 1 1848 140 9 43 chr11 9995641 9995773 -138787699 - AluJo SINE Alu -175 137 2 23 0 0 0 chr11 9995930 9995953 -138787519 + AT_rich Low_complexity Low_complexity 1 23 0 31 44 0 0 chr11 9996254 9996299 -138787173 + AT_rich Low_complexity Low_complexity 1 45 0 508 261 151 23 chr11 9996663 9996881 -138786591 - MIR SINE MIR 0 262 17 1613 191 7 17 chr11 9997667 9997966 -138785506 + AluJo SINE Alu 1 296 -16 231 36 0 0 chr11 9997966 9997994 -138785478 + (TG)n Simple_repeat Simple_repeat 2 29 0 294 279 38 0 chr11 9998001 9998080 -138785392 - MER103 DNA DNA -47 119 38 1324 154 154 8 chr11 9998084 9998351 -138785121 - AluSg1 SINE Alu -3 306 1 1498 188 32 29 chr11 9998375 9998684 -138784788 - AluJb SINE Alu -2 310 1 491 295 26 3 chr11 9998858 9999058 -138784414 + MIR SINE MIR 1 260 -2 226 309 93 21 chr11 10000209 10000306 -138783166 + MIR SINE MIR 36 139 -69 4830 153 32 13 chr11 10000689 10001127 -138782345 - L1MA8 LINE L1 0 6291 5863 2005 130 27 10 chr11 10001127 10001426 -138782046 - AluSx SINE Alu -4 308 5 4830 153 32 13 chr11 10001426 10001652 -138781820 - L1MA8 LINE L1 -428 5863 5643 1828 131 44 34 chr11 10001652 10001950 -138781522 - AluJb SINE Alu -8 304 4 4830 153 32 13 chr11 10001950 10002190 -138781282 - L1MA8 LINE L1 -648 5643 5369 230 206 26 153 chr11 10002759 10002948 -138780524 - HAL1 LINE L1 0 2507 2343 2761 117 7 32 chr11 10002994 10003206 -138780266 - MER57B LTR ERV1 -10 424 227 2495 60 0 22 chr11 10003206 10003523 -138779949 - AluY SINE Alu -1 310 1 2761 117 7 32 chr11 10003523 10003745 -138779727 - MER57B LTR ERV1 -207 227 1 588 90 0 22 chr11 10003869 10003958 -138779514 + AluJb SINE Alu 213 299 -13 2664 223 132 18 chr11 10003962 10004771 -138778701 + L1HS LINE L1 5465 7992 -3 2261 99 0 0 chr11 10004810 10005103 -138778369 - AluY SINE Alu -17 294 2 1283 194 55 22 chr11 10005146 10005324 -138778148 - AluJo SINE Alu -6 306 114 189 0 0 0 chr11 10005324 10005345 -138778127 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1283 194 55 22 chr11 10005345 10005439 -138778033 - AluJo SINE Alu -198 114 25 857 231 9 0 chr11 10005447 10005663 -138777809 + Charlie2a DNA MER1_type 1755 1972 -890 2240 103 13 0 chr11 10005782 10006083 -138777389 + AluSx SINE Alu 1 305 -7 257 308 28 75 chr11 10006881 10006988 -138776484 - L2 LINE L2 -49 3223 3122 427 227 177 14 chr11 10007142 10007283 -138776189 - MIR SINE MIR -8 254 91 216 216 52 113 chr11 10007409 10007506 -138775966 - L2 LINE L2 -46 3267 3177 2741 198 12 14 chr11 10007960 10008551 -138774921 - L1MB3 LINE L1 0 6183 5594 22 35 0 0 chr11 10008554 10008583 -138774889 + AT_rich Low_complexity Low_complexity 1 29 0 346 301 135 31 chr11 10008798 10009124 -138774348 + L1MC/D LINE L1 3127 3486 -2660 2384 182 44 14 chr11 10009136 10009637 -138773835 + L1MD3 LINE L1 7455 7970 -25 361 343 83 6 chr11 10009861 10010030 -138773442 + L1MC/D LINE L1 3718 3899 -2247 2442 72 0 10 chr11 10010057 10010364 -138773108 - AluSq SINE Alu -9 304 1 21 36 0 0 chr11 10010398 10010426 -138773046 + AT_rich Low_complexity Low_complexity 1 28 0 1022 194 24 65 chr11 10010533 10010873 -138772599 - LTR37B LTR ERV1 -11 457 132 330 284 140 53 chr11 10010976 10011240 -138772232 + L1MC/D LINE L1 5273 5559 -2249 366 221 10 0 chr11 10011527 10011611 -138771861 - MER31B LTR ERV1 -89 377 293 26 50 0 0 chr11 10011642 10011682 -138771790 + AT_rich Low_complexity Low_complexity 1 40 0 505 223 0 0 chr11 10012095 10012198 -138771274 + MER3 DNA MER1_type 1 103 -106 489 175 10 52 chr11 10012788 10012885 -138770587 + MER21B LTR ERV1 1 93 -770 2843 248 63 11 chr11 10012904 10013649 -138769823 + MER21B LTR ERV1 19 802 -61 1929 98 4 4 chr11 10015929 10016185 -138767287 - AluSp SINE Alu -18 295 40 418 230 30 30 chr11 10016325 10016460 -138767012 + L1M4 LINE L1 4500 4634 -1512 2409 69 0 7 chr11 10016465 10016771 -138766701 - AluY SINE Alu -7 304 1 1771 170 3 3 chr11 10016958 10017263 -138766209 + AluJb SINE Alu 1 305 0 1794 277 69 5 chr11 10017727 10018280 -138765192 - MLT1G LTR MaLR -2 588 1 6201 147 15 5 chr11 10018527 10020399 -138763073 + L1PA13 LINE L1 4191 6072 -91 985 142 0 35 chr11 10020514 10020683 -138762789 + FRAM SINE Alu 14 176 0 43787 39 6 1 chr11 10020773 10026896 -138756576 + L1PA4 LINE L1 2 6152 -3 231 275 11 22 chr11 10027226 10027317 -138756155 - L1ME LINE L1 -455 5735 5646 818 312 152 21 chr11 10028260 10028938 -138754534 - L2 LINE L2 -5 3308 2535 320 229 0 0 chr11 10028938 10028999 -138754473 + Tigger2 DNA MER2_type 2 62 -2656 283 321 38 31 chr11 10029129 10029288 -138754184 + MIR SINE MIR 97 256 -6 276 208 119 40 chr11 10029579 10029680 -138753792 - MLT1J2 LTR MaLR -305 145 37 669 292 165 23 chr11 10030940 10031334 -138752138 - MLT1J2 LTR MaLR 0 450 1 28 0 0 0 chr11 10031727 10031755 -138751717 + AT_rich Low_complexity Low_complexity 1 28 0 2407 87 3 0 chr11 10033498 10033810 -138749662 + AluSp SINE Alu 1 313 0 1294 258 65 4 chr11 10034501 10034990 -138748482 + L1M4 LINE L1 2714 3232 -2914 1177 219 43 41 chr11 10035017 10035409 -138748063 - L1ME LINE L1 -1109 5106 4714 279 277 57 14 chr11 10035412 10035553 -138747919 - L1ME LINE L1 -1787 4428 4282 260 287 47 15 chr11 10035555 10035756 -138747716 - L1ME LINE L1 -5040 1165 956 386 329 36 15 chr11 10035798 10035935 -138747537 - L1ME LINE L1 -5474 922 783 2179 175 103 119 chr11 10037105 10037868 -138745604 + MER52A LTR ERV1 1 853 -688 5060 173 7 1 chr11 10037868 10038819 -138744653 + L1P LINE L1 4359 5315 -831 1754 98 0 4 chr11 10038823 10039058 -138744414 + Charlie3 DNA MER1_type 2469 2702 -8 4208 205 166 15 chr11 10039058 10040329 -138743143 + L1 LINE L1 2621 4166 -1980 5120 75 20 20 chr11 10040329 10040852 -138742620 + LTR8 LTR ERV1 1 526 -165 2197 82 43 0 chr11 10040852 10041132 -138742340 + AluY SINE Alu 1 292 -19 5120 75 20 20 chr11 10041132 10041299 -138742173 + LTR8 LTR ERV1 525 691 0 4208 205 166 15 chr11 10041299 10041450 -138742022 + L1 LINE L1 4166 4293 -1853 288 250 0 0 chr11 10041672 10041732 -138741740 + GA-rich Low_complexity Low_complexity 3 62 0 436 174 46 28 chr11 10041741 10041850 -138741622 + L1ME4a LINE L1 5962 6072 -49 281 331 45 6 chr11 10041970 10042127 -138741345 + L2 LINE L2 2886 3048 -224 2139 117 7 0 chr11 10042149 10042439 -138741033 + AluSx SINE Alu 14 305 -7 369 282 33 98 chr11 10042736 10042934 -138740538 + MLT1J LTR MaLR 1 221 -289 1258 179 68 64 chr11 10042939 10043235 -138740237 + AluJo SINE Alu 5 301 -11 228 313 17 108 chr11 10043343 10043519 -138739953 + MLT1J LTR MaLR 342 501 -10 21 0 0 0 chr11 10043817 10043838 -138739634 + AT_rich Low_complexity Low_complexity 1 21 0 306 224 0 0 chr11 10044749 10044807 -138738665 - MIR SINE MIR -24 238 181 2402 90 0 3 chr11 10045027 10045328 -138738144 - AluSq SINE Alu -13 300 1 742 176 55 48 chr11 10045332 10045497 -138737975 - FRAM SINE Alu 0 166 1 2295 94 0 13 chr11 10045649 10045958 -138737514 - AluSq SINE Alu -8 305 1 1268 250 89 39 chr11 10046482 10046922 -138736550 - MLT1C LTR MaLR -5 462 1 622 137 21 0 chr11 10047189 10047311 -138736161 - FLAM_C SINE Alu 0 144 21 499 70 0 0 chr11 10047312 10047383 -138736089 - Alu SINE Alu -8 304 234 749 168 0 0 chr11 10047392 10047517 -138735955 - FLAM_C SINE Alu -18 125 1 24 0 0 0 chr11 10048828 10048852 -138734620 + AT_rich Low_complexity Low_complexity 1 24 0 2326 91 0 0 chr11 10049691 10049987 -138733485 - AluSx SINE Alu -5 307 12 303 28 0 0 chr11 10051352 10051388 -138732084 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2123 107 4 0 chr11 10051393 10051673 -138731799 - AluSx SINE Alu -30 282 2 1429 174 97 0 chr11 10051676 10051958 -138731514 - AluJb SINE Alu 0 307 1 23 33 0 0 chr11 10051961 10051991 -138731481 + AT_rich Low_complexity Low_complexity 1 30 0 293 244 24 24 chr11 10052203 10052285 -138731187 - L1M4 LINE L1 -688 5496 5415 2456 62 3 10 chr11 10052338 10052647 -138730825 - AluY SINE Alu -1 310 4 2362 143 33 21 chr11 10052754 10053182 -138730290 + Tigger2a DNA MER2_type 1 433 -1 29 78 0 0 chr11 10053205 10053269 -138730203 + AT_rich Low_complexity Low_complexity 1 64 0 225 279 0 0 chr11 10053278 10053339 -138730133 - L1P2 LINE L1 -397 5758 5698 850 227 0 0 chr11 10053436 10053590 -138729882 + FRAM SINE Alu 1 154 -12 891 231 40 27 chr11 10053590 10053807 -138729665 + MIR SINE MIR 15 236 -26 303 332 48 48 chr11 10053975 10054225 -138729247 + MLT1K LTR MaLR 230 479 -109 377 276 10 0 chr11 10054228 10054326 -138729146 - L1ME LINE L1 -511 5610 5512 182 351 152 12 chr11 10055819 10055990 -138727482 + L2 LINE L2 2426 2620 -694 369 259 114 11 chr11 10055997 10056226 -138727246 - MLT1J LTR MaLR -4 507 211 321 47 0 0 chr11 10056226 10056269 -138727203 + (TTTAA)n Simple_repeat Simple_repeat 3 45 0 1930 130 7 18 chr11 10056269 10056553 -138726919 - AluSx SINE Alu -29 283 3 225 94 0 0 chr11 10056657 10056689 -138726783 + (CAT)n Simple_repeat Simple_repeat 2 33 0 443 256 55 91 chr11 10057090 10057289 -138726183 + MIR SINE MIR 7 198 -64 1580 149 0 102 chr11 10057343 10057665 -138725807 + AluJb SINE Alu 2 290 -22 6505 69 8 3 chr11 10057907 10058762 -138724710 + L1PA7 LINE L1 5285 6143 -11 28 29 0 0 chr11 10058762 10058797 -138724675 + AT_rich Low_complexity Low_complexity 1 35 0 275 333 75 0 chr11 10058797 10058890 -138724582 + L2 LINE L2 3169 3268 -4 23 0 0 0 chr11 10060349 10060372 -138723100 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr11 10060713 10060736 -138722736 + AT_rich Low_complexity Low_complexity 1 23 0 2187 204 30 22 chr11 10061358 10061857 -138721615 - L1ME2 LINE L1 -146 6018 5516 3917 166 51 10 chr11 10062718 10063419 -138720053 - MER44D DNA MER2_type -3 602 1 555 146 0 10 chr11 10063955 10064058 -138719414 + L1MB2 LINE L1 5394 5495 -676 1018 116 0 7 chr11 10064061 10064207 -138719265 + AluSq/x SINE Alu 1 145 -167 2366 84 3 6 chr11 10064207 10064518 -138718954 + AluSg SINE Alu 1 310 0 3350 174 34 25 chr11 10064520 10065194 -138718278 + L1MB2 LINE L1 5491 6170 -1 408 276 39 31 chr11 10065197 10065324 -138718148 - MER5B DNA MER1_type -50 128 1 181 87 22 43 chr11 10066177 10066223 -138717249 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 22 70 0 0 chr11 10066538 10066581 -138716891 + AT_rich Low_complexity Low_complexity 1 43 0 2305 106 0 0 chr11 10067665 10067968 -138715504 - AluSx SINE Alu -9 303 1 227 371 24 67 chr11 10068410 10068620 -138714852 - L2 LINE L2 -420 2894 2694 2485 59 0 10 chr11 10068935 10069242 -138714230 - AluY SINE Alu -7 304 1 238 254 48 0 chr11 10069328 10069391 -138714081 - HsTC2 DNA Tc2 -1816 82 17 269 259 73 88 chr11 10070106 10070380 -138713092 + L1MEd LINE L1 569 838 -5281 453 276 32 40 chr11 10070604 10070854 -138712618 + L1MEd LINE L1 1010 1257 -4862 815 230 55 32 chr11 10070878 10071095 -138712377 - MIR SINE MIR 0 262 41 372 375 7 28 chr11 10071463 10071607 -138711865 + L2 LINE L2 3132 3272 0 28 0 0 0 chr11 10071720 10071748 -138711724 + AT_rich Low_complexity Low_complexity 1 28 0 1894 164 0 0 chr11 10071834 10072139 -138711333 + AluJo SINE Alu 1 305 -7 2416 122 8 19 chr11 10072541 10072909 -138710563 - THE1B LTR MaLR 0 364 1 2180 117 0 3 chr11 10073234 10073534 -138709938 - AluSx SINE Alu -13 299 1 23 33 0 0 chr11 10073921 10073951 -138709521 + AT_rich Low_complexity Low_complexity 1 30 0 2793 13 0 0 chr11 10076304 10076611 -138706861 + AluY SINE Alu 1 307 -4 2558 230 56 42 chr11 10077046 10077223 -138706249 - L1ME1 LINE L1 -47 6119 5946 1436 226 81 25 chr11 10077223 10077665 -138705807 + MLT1C LTR MaLR 1 467 0 2558 230 56 42 chr11 10077665 10078478 -138704994 - L1ME1 LINE L1 -220 5946 5114 2037 104 3 16 chr11 10078478 10078785 -138704687 - AluSx SINE Alu -9 303 1 2558 230 56 42 chr11 10078785 10078860 -138704612 - L1ME1 LINE L1 -1052 5114 5042 333 217 41 152 chr11 10078887 10078927 -138704545 - L1ME1 LINE L1 -10 6156 6113 1032 144 0 0 chr11 10078927 10079087 -138704385 + L1PA16 LINE L1 5988 6147 -19 333 217 41 152 chr11 10079087 10079336 -138704136 - L1ME1 LINE L1 -53 6113 5899 302 326 39 54 chr11 10079395 10079524 -138703948 - LTR67 LTR ERVL -386 171 45 964 258 32 0 chr11 10079979 10080227 -138703245 + L1M4 LINE L1 3584 3839 -2307 443 156 0 0 chr11 10080288 10080365 -138703107 + L1M4b LINE L1 95 171 -6688 2621 182 53 0 chr11 10080366 10080838 -138702634 + L1M4b LINE L1 595 1091 -5868 586 259 35 6 chr11 10080840 10081014 -138702458 + L1 LINE L1 2685 2863 -3283 1506 197 3 23 chr11 10081025 10081330 -138702142 - AluJo SINE Alu -13 299 1 10133 108 29 25 chr11 10081337 10083091 -138700381 - HUERS-P1 LTR ERV1 -1327 5271 3060 10107 101 13 67 chr11 10083078 10083436 -138700036 - HUERS-P1 LTR ERV1 -4659 1604 1228 * 297 0 0 0 chr11 10083436 10083469 -138700003 + (CA)n Simple_repeat Simple_repeat 2 34 0 10107 101 13 67 chr11 10083469 10084806 -138698666 - HUERS-P1 LTR ERV1 -5035 1228 1 448 162 0 0 chr11 10084806 10084874 -138698598 - LTR8 LTR ERV1 0 691 624 648 125 0 0 chr11 10084976 10085072 -138698400 + Tigger2 DNA MER2_type 649 744 -1974 1079 156 147 0 chr11 10085137 10085208 -138698264 + Tigger2 DNA MER2_type 2462 2521 -197 450 0 0 0 chr11 10085208 10085258 -138698214 + (TA)n Simple_repeat Simple_repeat 1 50 0 1079 156 147 0 chr11 10085258 10085410 -138698062 + Tigger2 DNA MER2_type 2521 2718 0 182 355 0 0 chr11 10085410 10085472 -138698000 - L2 LINE L2 -777 2537 2476 24 32 0 0 chr11 10085690 10085721 -138697751 + AT_rich Low_complexity Low_complexity 1 31 0 852 85 78 0 chr11 10085776 10085905 -138697567 - MER85 DNA T2_type 0 139 1 3031 248 42 45 chr11 10086034 10087065 -138696407 - L1ME LINE L1 -5041 1029 2 2145 115 20 7 chr11 10087240 10087536 -138695936 + AluSx SINE Alu 1 300 -12 402 302 65 103 chr11 10087536 10088250 -138695222 - L2 LINE L2 -107 3165 2456 2458 109 3 35 chr11 10088253 10088628 -138694844 + THE1B LTR MaLR 2 364 0 10527 98 32 38 chr11 10088628 10090218 -138693254 + THE1B-int LTR MaLR 1 1580 0 2400 98 0 70 chr11 10090221 10090458 -138693014 + THE1B LTR MaLR 4 205 -159 2075 121 10 14 chr11 10090458 10090755 -138692717 + AluSx SINE Alu 1 296 -16 2400 98 0 70 chr11 10090755 10090905 -138692567 + THE1B LTR MaLR 205 364 0 244 287 57 25 chr11 10091417 10091539 -138691933 - HAL1b LINE L1 -438 910 785 238 305 0 0 chr11 10091592 10091651 -138691821 - HAL1b LINE L1 -447 901 843 2185 105 0 0 chr11 10091785 10092071 -138691401 - AluSx SINE Alu -26 286 1 296 269 93 83 chr11 10092202 10092395 -138691077 + L3 LINE CR1 1219 1413 -164 322 258 206 7 chr11 10092810 10092965 -138690507 - L2 LINE L2 -542 2772 2587 807 129 0 0 chr11 10093019 10093135 -138690337 - AluJb SINE Alu -12 300 185 2293 97 0 0 chr11 10094009 10094318 -138689154 - AluY SINE Alu -2 309 1 1097 162 65 51 chr11 10094354 10094570 -138688902 + MER20 DNA MER1_type 1 219 0 466 347 50 8 chr11 10094986 10095343 -138688129 + ERVL LTR ERVL 869 1240 -4524 2340 86 3 0 chr11 10095598 10095890 -138687582 - AluSc SINE Alu -16 293 1 1750 321 83 48 chr11 10096108 10097365 -138686107 + ERVL LTR ERVL 1800 3099 -2665 2306 102 0 3 chr11 10097624 10097929 -138685543 - AluSq SINE Alu -9 304 1 743 261 74 110 chr11 10098066 10098317 -138685155 + MLT1J LTR MaLR 3 227 -284 1846 156 0 31 chr11 10098317 10098637 -138684835 - AluJb SINE Alu -2 310 1 743 261 74 110 chr11 10098637 10098913 -138684559 + MLT1J LTR MaLR 227 511 0 192 380 8 25 chr11 10098913 10099034 -138684438 - L2 LINE L2 -873 2441 2323 453 265 184 14 chr11 10100457 10100604 -138682868 - MIR3 SINE MIR -16 192 21 3227 199 88 53 chr11 10101270 10102739 -138680733 - L1MDb LINE L1 -4487 1919 407 2321 275 39 2 chr11 10102712 10103334 -138680138 - L1MDb LINE L1 -5753 656 12 * 628 111 10 0 chr11 10103352 10103451 -138680021 - L1MB7 LINE L1 -15 6169 6070 204 40 0 0 chr11 10103451 10103476 -138679996 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1629 123 0 8 chr11 10103485 10103737 -138679735 - L1PA10 LINE L1 -11 6157 5908 1372 144 35 42 chr11 10103738 10103990 -138679482 - L1MB7 LINE L1 -106 6078 5827 2081 89 3 73 chr11 10103990 10104305 -138679167 - AluY SINE Alu -18 293 1 1372 144 35 42 chr11 10104305 10104364 -138679108 - L1MB7 LINE L1 -357 5827 5769 623 241 85 66 chr11 10104355 10105837 -138677635 - L1MEc LINE L1 -4760 1636 36 * 2373 57 0 10 chr11 10105860 10106156 -138677316 - AluY SINE Alu -18 293 1 292 355 33 44 chr11 10106168 10106441 -138677031 - L2 LINE L2 -540 2774 2505 243 132 0 0 chr11 10106775 10106813 -138676659 - Alu SINE Alu -9 299 262 1064 42 0 0 chr11 10106816 10106934 -138676538 - AluSq/x SINE Alu -182 130 13 310 328 178 35 chr11 10107990 10108328 -138675144 + L3 LINE CR1 726 1111 -466 550 256 83 22 chr11 10108352 10108532 -138674940 - MIR SINE MIR -56 206 16 343 296 0 0 chr11 10108593 10108674 -138674798 - FRAM/FAM SINE Alu -88 78 1 840 116 6 110 chr11 10108675 10108848 -138674624 - L1M3 LINE L1 -500 5671 5517 855 173 105 0 chr11 10108851 10109013 -138674459 - AluJo SINE Alu -133 179 1 13143 129 59 19 chr11 10109058 10111382 -138672090 + Tigger1 DNA MER2_type 1 2418 0 334 284 45 0 chr11 10111619 10111707 -138671765 + L1ME LINE L1 5666 5757 -364 183 42 0 0 chr11 10111797 10111821 -138671651 + (TA)n Simple_repeat Simple_repeat 2 25 0 383 157 148 17 chr11 10111849 10111964 -138671508 + L1ME4a LINE L1 5989 6118 -3 1883 151 11 0 chr11 10111977 10112262 -138671210 + AluJb SINE Alu 1 288 -24 201 205 0 121 chr11 10112430 10112513 -138670959 - L2 LINE L2 -4 3268 3196 345 333 42 0 chr11 10112600 10112696 -138670776 + L2 LINE L2 3121 3220 -52 855 202 5 31 chr11 10113370 10113563 -138669909 + MER20 DNA MER1_type 32 219 0 2157 128 0 0 chr11 10113845 10114135 -138669337 + AluSx SINE Alu 1 290 -22 1322 201 58 15 chr11 10114172 10114501 -138668971 + MER2 DNA MER2_type 2 344 0 2463 60 7 0 chr11 10115004 10115304 -138668168 + AluY SINE Alu 1 302 -9 771 262 62 9 chr11 10115874 10116084 -138667388 + MIR SINE MIR 4 224 -38 376 349 0 0 chr11 10117620 10117729 -138665743 - MIR SINE MIR -68 140 32 2232 102 3 3 chr11 10118490 10118785 -138664687 - AluSp SINE Alu -18 295 1 274 341 16 0 chr11 10119344 10119470 -138664002 + L3 LINE CR1 735 862 -715 357 256 7 66 chr11 10120817 10120954 -138662518 - MLT1J1 LTR MaLR 0 446 318 688 238 150 35 chr11 10120976 10121262 -138662210 - LTR36 LTR ERV1 0 611 293 338 75 60 0 chr11 10121327 10121394 -138662078 + GA-rich Low_complexity Low_complexity 2 72 0 596 269 56 15 chr11 10121483 10121680 -138661792 - MLT1J2 LTR MaLR -245 205 1 1398 230 104 47 chr11 10121764 10122097 -138661375 + MER21B LTR ERV1 1 370 -493 1539 185 20 30 chr11 10122097 10122399 -138661073 - AluJo SINE Alu -13 299 1 1398 230 104 47 chr11 10122399 10122535 -138660937 + MER21B LTR ERV1 370 497 -366 306 263 0 42 chr11 10122805 10122923 -138660549 + L1MC/D LINE L1 5720 5832 -1976 2216 153 8 99 chr11 10122923 10123037 -138660435 + L1MB2 LINE L1 5375 5498 -685 773 213 7 13 chr11 10123037 10123192 -138660280 + FRAM SINE Alu 1 154 -12 2216 153 8 99 chr11 10123192 10123600 -138659872 + L1MB2 LINE L1 5498 5849 -334 1654 140 12 43 chr11 10123638 10123700 -138659772 + L1MB2 LINE L1 5849 5911 -260 1838 91 0 0 chr11 10123700 10123941 -138659531 + AluY SINE Alu 71 311 0 1654 140 12 43 chr11 10123941 10124206 -138659266 + L1MB2 LINE L1 5911 6166 -5 652 210 57 17 chr11 10124279 10124455 -138659017 + L1M4 LINE L1 4676 4858 -1288 2088 165 21 35 chr11 10124518 10124942 -138658530 - L1MA5 LINE L1 0 6300 5883 855 196 80 9 chr11 10124953 10125178 -138658294 + L1M4 LINE L1 4856 5096 -1050 1258 146 0 101 chr11 10125532 10125585 -138657887 + AluJb SINE Alu 83 140 -172 2357 69 3 0 chr11 10125585 10125874 -138657598 + AluSc SINE Alu 1 290 -19 241 25 0 50 chr11 10125880 10125920 -138657552 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1258 146 0 101 chr11 10125920 10126106 -138657366 + AluJb SINE Alu 145 304 -8 210 259 0 0 chr11 10126239 10126297 -138657175 + (TA)n Simple_repeat Simple_repeat 1 58 0 487 264 136 13 chr11 10227491 10227646 -138555826 - MIR SINE MIR -72 190 17 481 206 112 9 chr11 10227869 10227976 -138555496 + L2 LINE L2 3196 3313 0 4476 200 30 8 chr11 10228278 10229225 -138554247 - L1P LINE L1 -5169 977 11 322 282 111 8 chr11 10229905 10230022 -138553450 + L2 LINE L2 3138 3266 -6 998 305 191 22 chr11 10231349 10231567 -138551905 + L2 LINE L2 2204 2384 -930 8554 53 1 0 chr11 10231567 10232535 -138550937 + LTR5 LTR ERVK 1 969 0 998 305 191 22 chr11 10232535 10232948 -138550524 + L2 LINE L2 2384 2942 -372 23 0 0 0 chr11 10233127 10233150 -138550322 + AT_rich Low_complexity Low_complexity 1 23 0 567 331 50 35 chr11 10233352 10233692 -138549780 - L1ME3 LINE L1 -332 5830 5480 2936 149 13 63 chr11 10233692 10234234 -138549238 + MLT2B2 LTR ERVL 1 515 0 567 331 50 35 chr11 10234234 10234352 -138549120 - L1ME3 LINE L1 -682 5480 5365 359 248 27 67 chr11 10234376 10234525 -138548947 - L1ME4a LINE L1 -190 5931 5789 360 0 0 0 chr11 10234613 10234653 -138548819 + (TG)n Simple_repeat Simple_repeat 2 41 0 1411 158 18 4 chr11 10234654 10234882 -138548590 - AluJo SINE Alu -39 273 43 607 153 0 9 chr11 10234982 10235093 -138548379 + LTR5 LTR ERVK 858 967 -2 405 348 128 19 chr11 10235244 10235722 -138547750 + L2 LINE L2 2638 3183 -130 360 64 0 0 chr11 10235914 10235961 -138547511 + (TGGA)n Simple_repeat Simple_repeat 1 47 0 274 139 125 14 chr11 10237689 10237761 -138545711 + MIR3 SINE MIR 5 84 -124 265 336 66 0 chr11 10239317 10239439 -138544033 - L2 LINE L2 -1 3271 3142 1679 155 8 4 chr11 10239634 10239892 -138543580 - AluJo SINE Alu -27 285 27 7784 42 3 0 chr11 10240854 10241925 -138541547 - L1PA4 LINE L1 -4 6151 5082 26 0 0 0 chr11 10241995 10242021 -138541451 + AT_rich Low_complexity Low_complexity 1 26 0 1031 92 8 0 chr11 10242091 10242222 -138541250 + AluSp SINE Alu 39 170 -143 234 0 0 0 chr11 10242557 10242583 -138540889 + (T)n Simple_repeat Simple_repeat 1 26 0 242 261 38 76 chr11 10242693 10242850 -138540622 - MIR SINE MIR -40 222 72 647 210 59 41 chr11 10242909 10243106 -138540366 + MIR SINE MIR 64 262 0 1840 122 59 0 chr11 10243113 10243383 -138540089 - AluSg SINE Alu -24 286 1 1626 214 40 81 chr11 10243821 10244036 -138539436 + HAL1b LINE L1 794 1016 -332 1787 190 0 0 chr11 10244036 10244336 -138539136 + AluJb SINE Alu 1 300 -12 1626 214 40 81 chr11 10244336 10244699 -138538773 + HAL1b LINE L1 1016 1348 0 21 36 0 0 chr11 10245512 10245540 -138537932 + AT_rich Low_complexity Low_complexity 1 28 0 1755 207 36 66 chr11 10246877 10247132 -138536340 - LTR16C LTR ERVL -2 489 253 2345 104 0 0 chr11 10247132 10247429 -138536043 - AluSx SINE Alu -15 297 1 1755 207 36 66 chr11 10247429 10247642 -138535830 - LTR16C LTR ERVL -238 253 35 1982 146 3 19 chr11 10247771 10248079 -138535393 - AluJb SINE Alu -9 303 1 689 264 31 22 chr11 10248354 10248581 -138534891 + L1M4 LINE L1 4616 4844 -1302 251 118 0 0 chr11 10248612 10248646 -138534826 - U2 snRNA snRNA -154 34 1 244 279 54 58 chr11 10248720 10248996 -138534476 + L1M4 LINE L1 4931 5205 -941 2273 112 0 3 chr11 10249586 10249890 -138533582 + AluSx SINE Alu 1 303 -9 2375 84 3 0 chr11 10250103 10250400 -138533072 + AluSx SINE Alu 1 298 -14 1274 125 22 5 chr11 10250620 10250804 -138532668 + AluSg/x SINE Alu 111 297 -15 1665 169 54 30 chr11 10250810 10251142 -138532330 - THE1C LTR MaLR -35 340 1 306 176 20 0 chr11 10251142 10251190 -138532282 - AluSp SINE Alu -121 182 134 426 137 0 68 chr11 10251198 10251249 -138532223 - MLT1B LTR MaLR -318 72 26 1868 153 85 23 chr11 10251249 10251602 -138531870 + THE1C LTR MaLR 1 375 0 426 137 0 68 chr11 10251602 10251623 -138531849 - MLT1B LTR MaLR -364 26 5 297 75 0 0 chr11 10251679 10251719 -138531753 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 2385 226 48 35 chr11 10251865 10252444 -138531028 - MLT1E LTR MaLR -2 591 5 256 353 58 14 chr11 10252848 10252987 -138530485 + L2 LINE L2 3169 3313 0 1875 177 3 0 chr11 10252989 10253289 -138530183 + AluJo SINE Alu 1 301 -11 288 224 15 30 chr11 10253688 10253755 -138529717 - L2 LINE L2 0 3272 3207 1988 167 0 0 chr11 10253874 10254180 -138529292 + AluJb SINE Alu 1 306 -6 288 0 0 0 chr11 10254180 10254212 -138529260 + (TA)n Simple_repeat Simple_repeat 2 33 0 1554 171 0 32 chr11 10254245 10254526 -138528946 - AluJo SINE Alu -40 272 1 958 231 192 34 chr11 10254526 10254937 -138528535 + L3 LINE CR1 636 1111 -466 380 332 82 26 chr11 10256031 10256263 -138527209 - MLT1L LTR MaLR 0 615 371 2570 51 0 0 chr11 10261397 10261693 -138521779 + AluY SINE Alu 1 296 -15 724 164 0 64 chr11 10261765 10261905 -138521567 - FLAM_C SINE Alu 0 133 3 670 254 86 35 chr11 10263259 10263491 -138519981 - MIR SINE MIR -12 250 7 363 96 0 0 chr11 10263894 10263946 -138519526 + (TG)n Simple_repeat Simple_repeat 1 52 0 182 377 0 14 chr11 10264410 10264479 -138518993 + L2 LINE L2 2557 2624 -690 215 236 0 83 chr11 10264485 10264557 -138518915 + L2 LINE L2 3248 3313 0 1781 179 101 31 chr11 10264700 10265058 -138518414 - MLT1B LTR MaLR -3 387 5 326 273 8 83 chr11 10265519 10265640 -138517832 - MER5B DNA MER1_type -66 112 1 433 286 70 36 chr11 10266764 10267065 -138516407 + L1MC5 LINE L1 7451 7761 -200 235 127 32 48 chr11 10267099 10267162 -138516310 + A-rich Low_complexity Low_complexity 4 65 0 370 254 0 25 chr11 10267209 10267327 -138516145 + L1MC5 LINE L1 7806 7920 -41 23 54 0 0 chr11 10267394 10267431 -138516041 + AT_rich Low_complexity Low_complexity 1 37 0 331 315 98 74 chr11 10267709 10267803 -138515669 + L1ME LINE L1 4915 5005 -1141 1577 129 0 0 chr11 10267803 10268020 -138515452 + AluJb SINE Alu 87 303 -9 331 315 98 74 chr11 10268020 10268344 -138515128 + L1ME LINE L1 5005 5343 -803 1746 148 16 0 chr11 10268389 10268645 -138514827 + AluJo SINE Alu 22 281 -31 215 59 0 29 chr11 10268651 10268685 -138514787 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 2146 169 5 63 chr11 10268794 10269220 -138514252 + MER57A LTR ERV1 1 401 -2 712 252 191 36 chr11 10269228 10269537 -138513935 + L1MEd LINE L1 3 359 -5760 814 253 77 37 chr11 10269554 10269851 -138513621 + L1MEd LINE L1 515 823 -5296 384 259 79 79 chr11 10269945 10269989 -138513483 + L1ME LINE L1 5477 5520 -601 2326 104 0 3 chr11 10269989 10270288 -138513184 - AluSq SINE Alu -15 298 1 384 259 79 79 chr11 10270288 10270432 -138513040 + L1ME LINE L1 5519 5665 -456 1304 254 105 32 chr11 10270550 10271141 -138512331 + L1MEd LINE L1 966 1599 -4530 780 174 0 42 chr11 10271164 10271308 -138512164 - AluJo SINE Alu -174 138 1 870 236 117 34 chr11 10271325 10271770 -138511702 + L1MEd LINE L1 1647 2128 -4182 900 108 31 8 chr11 10271771 10271901 -138511571 + AluSq/x SINE Alu 1 133 -180 2189 128 0 16 chr11 10271913 10272225 -138511247 + AluSg SINE Alu 1 307 -3 210 37 0 0 chr11 10272228 10272255 -138511217 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3290 221 43 66 chr11 10272255 10272429 -138511043 + L1MEd LINE L1 2104 2280 -3849 1892 155 0 32 chr11 10272429 10272745 -138510727 + AluJb SINE Alu 1 306 -6 3290 221 43 66 chr11 10272745 10273439 -138510033 + L1MEd LINE L1 2280 2988 -3141 2005 129 4 0 chr11 10273439 10273756 -138509716 + AluSx SINE Alu 1 318 0 3290 221 43 66 chr11 10273756 10274483 -138508989 + L1MEd LINE L1 2988 3825 -2304 23 0 0 0 chr11 10274860 10274883 -138508589 + AT_rich Low_complexity Low_complexity 1 23 0 1253 273 44 9 chr11 10274939 10275394 -138508078 - L1MC4a LINE L1 -1788 6020 5550 1985 219 67 39 chr11 10275427 10276145 -138507327 + MER21B LTR ERV1 15 809 -54 270 273 68 23 chr11 10276187 10276319 -138507153 - L1MC4a LINE L1 -2267 5541 5404 * 486 317 128 29 chr11 10276308 10276884 -138506588 - L1MC4a LINE L1 -1825 4321 3669 537 16 0 0 chr11 10276884 10276946 -138506526 + (TG)n Simple_repeat Simple_repeat 1 62 0 486 317 128 29 chr11 10276946 10277026 -138506446 - L1MC4a LINE L1 -2477 3669 3598 704 285 65 5 chr11 10277959 10278173 -138505299 + MIR SINE MIR 29 255 -7 2751 111 3 6 chr11 10278173 10278535 -138504937 + THE1B LTR MaLR 1 361 -3 258 303 91 24 chr11 10278700 10278865 -138504607 + L2 LINE L2 2919 3094 -178 2301 117 0 0 chr11 10279035 10279344 -138504128 - AluSx SINE Alu -3 309 1 816 272 128 13 chr11 10280325 10280638 -138502834 + MLT1I LTR MaLR 7 355 -54 1098 215 173 16 chr11 10280953 10281365 -138502107 + MLT1F LTR MaLR 1 541 -1 1420 120 93 31 chr11 10282068 10282248 -138501224 + L1MA8 LINE L1 5976 6182 -109 9348 108 16 4 chr11 10282248 10283530 -138499942 - HSMAR2 DNA Mariner -4 1298 1 1420 120 93 31 chr11 10283530 10283640 -138499832 + L1MA8 LINE L1 6182 6284 -7 258 221 180 49 chr11 10283784 10283906 -138499566 - MIR SINE MIR -65 197 60 667 124 18 44 chr11 10284292 10284405 -138499067 + L1MB2 LINE L1 6060 6169 -2 260 282 65 0 chr11 10284743 10284866 -138498606 - L1MC4 LINE L1 -1139 6646 6544 246 303 0 22 chr11 10284844 10284933 -138498539 + L1MC4 LINE L1 6617 6703 -1339 * 395 309 99 4 chr11 10286127 10286286 -138497186 - MIR3 SINE MIR -22 186 17 225 0 0 0 chr11 10286661 10286686 -138496786 + (T)n Simple_repeat Simple_repeat 1 25 0 647 210 59 41 chr11 10287012 10287209 -138496263 + MIR SINE MIR 64 262 0 974 149 0 0 chr11 10287216 10287364 -138496108 - AluSg/x SINE Alu -24 288 141 1779 127 16 65 chr11 10287488 10287811 -138495661 + MLT1B LTR MaLR 84 390 0 412 337 45 22 chr11 10288748 10288926 -138494546 - L2 LINE L2 -220 3052 2871 2254 135 32 46 chr11 10289034 10289197 -138494275 - L1MC3 LINE L1 0 7785 7621 1859 183 0 0 chr11 10289197 10289497 -138493975 - AluJb SINE Alu -12 300 1 2254 135 32 46 chr11 10289497 10289771 -138493701 - L1MC3 LINE L1 -164 7621 7354 309 291 41 76 chr11 10289855 10290027 -138493445 + L2 LINE L2 2708 2873 -441 1195 176 0 82 chr11 10290045 10290323 -138493149 - AluJo SINE Alu -4 308 54 846 138 8 0 chr11 10290323 10290446 -138493026 + AluJb SINE Alu 1 124 -188 5590 37 0 0 chr11 10290449 10291462 -138492010 - L1PA4 LINE L1 -410 5745 4733 3331 33 10 0 chr11 10291462 10291850 -138491622 + L1PA4 LINE L1 5756 6150 -5 885 210 34 0 chr11 10291855 10292031 -138491441 + AluJb SINE Alu 131 312 0 385 176 47 3 chr11 10292032 10292113 -138491359 - AluJ/FLAM SINE Alu -240 62 1 529 309 72 8 chr11 10292171 10292436 -138491036 - L2 LINE L2 -776 2538 2257 848 200 19 0 chr11 10292862 10293017 -138490455 - FRAM SINE Alu -13 163 6 1660 177 20 23 chr11 10293063 10293362 -138490110 - AluJb SINE Alu -14 298 1 33449 97 12 14 chr11 10293616 10298415 -138485057 + L1P LINE L1 11 4797 -1349 232 169 0 31 chr11 10298402 10298467 -138485005 + L1MC4 LINE L1 6640 6702 -1340 * 333 207 98 0 chr11 10298476 10298558 -138484914 + L1MC4 LINE L1 6614 6703 -1339 216 97 0 0 chr11 10298558 10298589 -138484883 + (TATG)n Simple_repeat Simple_repeat 1 31 0 878 172 53 13 chr11 10298589 10298719 -138484753 + L1PA6 LINE L1 4794 4917 -1229 360 64 0 0 chr11 10298719 10298766 -138484706 + (TATG)n Simple_repeat Simple_repeat 2 48 0 6719 59 29 5 chr11 10298768 10300093 -138483379 + L1PA6 LINE L1 4799 6145 -9 878 172 53 13 chr11 10300093 10300206 -138483266 + L1PA6 LINE L1 4917 5061 -1085 374 277 63 20 chr11 10300230 10300423 -138483049 + MLT1L LTR MaLR 232 531 -84 1076 169 0 0 chr11 10300440 10300606 -138482866 - AluJ SINE Alu -13 299 134 388 304 8 24 chr11 10300634 10300759 -138482713 + MER5B DNA MER1_type 2 124 -54 774 242 0 0 chr11 10300760 10300909 -138482563 - AluJo SINE Alu -27 285 137 277 239 0 0 chr11 10300909 10300976 -138482496 + MER5B DNA MER1_type 112 178 0 745 248 129 0 chr11 10301917 10302127 -138481345 + MIR SINE MIR 26 262 0 4906 254 41 11 chr11 10302163 10303546 -138479926 + HERVL LTR ERVL 3563 5086 -678 22 35 0 0 chr11 10304139 10304168 -138479304 + AT_rich Low_complexity Low_complexity 1 29 0 433 264 136 13 chr11 10304292 10304447 -138479025 - MIR SINE MIR -72 190 17 441 206 112 9 chr11 10304670 10304777 -138478695 + L2 LINE L2 3196 3313 0 246 105 0 0 chr11 10304927 10304965 -138478507 + (GA)n Simple_repeat Simple_repeat 2 39 0 1521 85 27 0 chr11 10305063 10305286 -138478186 - L1MA8 LINE L1 -7 6284 6056 258 323 19 77 chr11 10306182 10306337 -138477135 + L2 LINE L2 3127 3272 0 24 0 0 0 chr11 10306684 10306708 -138476764 + AT_rich Low_complexity Low_complexity 1 24 0 640 152 125 0 chr11 10306708 10306820 -138476652 - AluJo SINE Alu -185 127 2 1847 176 0 22 chr11 10307198 10307671 -138475801 - AluJb SINE Alu 0 466 1 1953 154 17 0 chr11 10307750 10308042 -138475430 - AluJb SINE Alu -15 297 1 929 251 103 48 chr11 10309527 10309765 -138473707 + MLT1G LTR MaLR 4 262 -333 1698 236 137 42 chr11 10309765 10310307 -138473165 - MLT1E LTR MaLR 0 593 1 929 251 103 48 chr11 10310307 10310359 -138473113 + MLT1G LTR MaLR 262 310 -285 1081 234 5 5 chr11 10310368 10310573 -138472899 + MLT1G LTR MaLR 346 550 -40 206 323 20 20 chr11 10312179 10312278 -138471194 + MIR SINE MIR 43 141 -67 276 211 0 0 chr11 10313025 10313077 -138470395 + L2 LINE L2 3219 3270 -2 562 281 80 28 chr11 10313282 10313570 -138469902 + L1ME4a LINE L1 5600 5905 -216 449 51 0 0 chr11 10313678 10313737 -138469735 + Alu SINE Alu 243 301 -10 1027 288 94 15 chr11 10314715 10315253 -138468219 + L2 LINE L2 2725 3313 0 328 111 0 0 chr11 10315619 10315664 -138467808 - MLT2C1 LTR ERVL -2 518 474 221 180 80 0 chr11 10315722 10315772 -138467700 + GA-rich Low_complexity Low_complexity 2 55 0 1720 171 48 12 chr11 10315772 10316106 -138467366 - MLT2C1 LTR ERVL -48 349 4 1187 280 138 6 chr11 10316418 10317240 -138466232 - L2 LINE L2 -81 3232 2302 2570 111 8 13 chr11 10317647 10318024 -138465448 - THE1C LTR MaLR 0 375 1 182 361 55 6 chr11 10318408 10318591 -138464881 - L2 LINE L2 -499 2815 2624 1008 198 5 40 chr11 10319507 10319709 -138463763 - MER21B LTR ERV1 -373 490 296 203 213 43 0 chr11 10319843 10319890 -138463582 + (TATG)n Simple_repeat Simple_repeat 3 51 0 3136 176 55 105 chr11 10319939 10320864 -138462608 - L1MA10 LINE L1 -99 6235 5357 219 253 165 0 chr11 10321251 10321330 -138462142 + MIR SINE MIR 64 155 -107 553 225 9 0 chr11 10321652 10321763 -138461709 - L2 LINE L2 -2 3311 3200 275 289 10 10 chr11 10322351 10322448 -138461024 + MIR SINE MIR 41 137 -71 991 271 86 21 chr11 10323078 10323461 -138460011 + MLT1K LTR MaLR 181 588 0 1897 172 30 9 chr11 10324109 10324259 -138459213 + MER2 DNA MER2_type 1 146 -199 7221 114 46 35 chr11 10324259 10325476 -138457996 + Tigger3b DNA MER2_type 1 1231 0 1897 172 30 9 chr11 10325476 10325662 -138457810 + MER2 DNA MER2_type 146 344 -1 2347 112 0 0 chr11 10325683 10325988 -138457484 + AluSq SINE Alu 1 305 -8 30 93 0 0 chr11 10327027 10327113 -138456359 + AT_rich Low_complexity Low_complexity 1 86 0 796 100 0 17 chr11 10327245 10327365 -138456107 - L1PB4 LINE L1 -2 6154 6037 1463 192 12 51 chr11 10327823 10328156 -138455316 + L1ME2 LINE L1 5842 6161 -3 1332 198 23 0 chr11 10328887 10329145 -138454327 - MER58B DNA MER1_type 0 341 78 1550 108 0 0 chr11 10329147 10329341 -138454131 - AluSg/x SINE Alu -14 298 105 232 330 34 0 chr11 10329370 10329458 -138454014 - MER58B DNA MER1_type -250 91 1 238 291 27 63 chr11 10330780 10330898 -138452574 - MIR SINE MIR -66 142 37 329 290 97 43 chr11 10331053 10331239 -138452233 + MIR3 SINE MIR 3 198 -10 902 284 81 50 chr11 10331707 10332310 -138451162 - HAL1 LINE L1 -1885 622 1 2211 288 83 38 chr11 10332331 10333248 -138450224 + L2 LINE L2 1853 2727 -586 1096 217 159 0 chr11 10333248 10333506 -138449966 - AluJo SINE Alu -3 299 1 2211 288 83 38 chr11 10333506 10333759 -138449713 + L2 LINE L2 2727 2967 -346 1899 89 58 122 chr11 10333759 10334119 -138449353 - MER1B DNA MER1_type 0 337 1 2211 288 83 38 chr11 10334119 10334343 -138449129 + L2 LINE L2 2967 3313 0 2374 96 0 0 chr11 10335470 10335773 -138447699 - AluSc SINE Alu -6 303 1 1775 100 93 7 chr11 10336493 10336762 -138446710 + AluSx SINE Alu 1 292 -20 1544 186 24 17 chr11 10336851 10337142 -138446330 - AluJo SINE Alu -19 293 1 2147 92 43 0 chr11 10338427 10338709 -138444763 - AluSc SINE Alu -15 294 1 273 254 59 67 chr11 10338978 10339287 -138444185 - Charlie1 DNA MER1_type -1027 1734 1378 31565 105 25 55 chr11 10340720 10347043 -138436429 - L1PA7 LINE L1 -14 6140 12 267 281 45 0 chr11 10347056 10347145 -138436327 + MER112 DNA MER1_type 164 256 -4 499 207 121 35 chr11 10347636 10347810 -138435662 - ORSL DNA AcHobo -76 199 11 693 283 105 41 chr11 10348039 10348428 -138435044 - MLT1K LTR MaLR -10 578 165 192 194 129 16 chr11 10348696 10348758 -138434714 - MIR SINE MIR -69 193 125 180 308 0 0 chr11 10348767 10348819 -138434653 - MIR SINE MIR -15 247 196 237 268 7 80 chr11 10348846 10348984 -138434488 - LTR67 LTR ERVL -4 553 426 282 184 0 0 chr11 10349111 10349160 -138434312 - MLT1K LTR MaLR -339 249 201 1549 238 118 9 chr11 10349307 10349749 -138433723 - LTR33 LTR ERVL -31 490 1 466 314 7 7 chr11 10349760 10349900 -138433572 - MIR SINE MIR -118 144 5 778 280 71 4 chr11 10350496 10350735 -138432737 - MIR SINE MIR 0 262 8 396 194 71 51 chr11 10351087 10351185 -138432287 + MLT1J2 LTR MaLR 307 406 -44 3627 119 22 8 chr11 10351209 10351795 -138431677 - L1MA3 LINE L1 -2 6303 5710 8014 215 36 28 chr11 10352139 10354313 -138429159 + L1M4 LINE L1 2183 4374 -1772 7129 193 23 20 chr11 10354521 10356971 -138426501 + L1MB7 LINE L1 3709 6165 -19 1856 174 3 7 chr11 10357160 10357459 -138426013 + AluJb SINE Alu 15 312 0 2628 118 3 3 chr11 10358037 10358401 -138425071 - THE1B LTR MaLR 0 364 1 1210 228 55 78 chr11 10358676 10359317 -138424155 - L1M4 LINE L1 -2447 3699 3074 830 147 0 23 chr11 10359363 10359492 -138423980 - FLAM_C SINE Alu -17 126 1 325 195 0 122 chr11 10359493 10359535 -138423937 - L1M4 LINE L1 -3059 3087 3041 2227 113 3 0 chr11 10359535 10359837 -138423635 - AluSq SINE Alu -10 303 1 325 195 0 122 chr11 10359837 10359917 -138423555 - L1M4 LINE L1 -3105 3041 2980 254 257 119 0 chr11 10360736 10360837 -138422635 - L1ME4a LINE L1 -195 5926 5814 517 279 40 35 chr11 10361804 10362005 -138421467 + LTR33 LTR ERVL 320 521 0 298 265 111 8 chr11 10363045 10363162 -138420310 + L2 LINE L2 3138 3266 -6 243 295 0 0 chr11 10363797 10363858 -138419614 + MLT1J LTR MaLR 229 289 -222 2810 3 0 16 chr11 10363867 10364176 -138419296 - AluYb8 SINE Alu -14 304 1 430 214 152 45 chr11 10364240 10364418 -138419054 + MLT1J LTR MaLR 304 500 -11 481 202 40 8 chr11 10365062 10365186 -138418286 - L1MB4 LINE L1 0 6180 6053 23 33 0 0 chr11 10365192 10365222 -138418250 + AT_rich Low_complexity Low_complexity 1 30 0 521 98 24 0 chr11 10365222 10365304 -138418168 - L1PA16 LINE L1 -4 6162 6079 204 206 48 16 chr11 10367404 10367467 -138416005 + G-rich Low_complexity Low_complexity 3 67 0 2597 236 143 39 chr11 10367547 10368277 -138415195 + Charlie7 DNA MER1_type 32 931 -1681 2337 89 0 16 chr11 10368277 10368581 -138414891 + AluSx SINE Alu 1 299 -13 2597 236 143 39 chr11 10368581 10369018 -138414454 + Charlie7 DNA MER1_type 931 1321 -1291 677 296 126 22 chr11 10369096 10369454 -138414018 - Charlie7 DNA MER1_type -2217 395 1 2363 227 115 50 chr11 10369649 10369986 -138413486 + Charlie7 DNA MER1_type 1345 1659 -953 414 57 0 0 chr11 10369986 10370039 -138413433 + (CA)n Simple_repeat Simple_repeat 2 54 0 2363 227 115 50 chr11 10370039 10370818 -138412654 + Charlie7 DNA MER1_type 1659 2533 -79 207 291 97 63 chr11 10370975 10371563 -138411909 - L2 LINE L2 -828 2486 1879 432 0 0 0 chr11 10371608 10371656 -138411816 + (TG)n Simple_repeat Simple_repeat 2 49 0 324 0 0 0 chr11 10371710 10371746 -138411726 + (TG)n Simple_repeat Simple_repeat 2 37 0 27 73 0 0 chr11 10372250 10372305 -138411167 + GC_rich Low_complexity Low_complexity 1 55 0 197 211 35 0 chr11 10373959 10374016 -138409456 + L2 LINE L2 3255 3313 0 712 279 68 13 chr11 10374107 10374312 -138409160 - MIR SINE MIR -10 252 31 2334 104 0 3 chr11 10374312 10374621 -138408851 - AluSx SINE Alu -4 308 1 712 279 68 13 chr11 10374621 10374652 -138408820 - MIR SINE MIR -231 31 3 336 248 178 0 chr11 10374722 10374823 -138408649 - L2 LINE L2 0 3313 3195 2192 118 3 19 chr11 10374943 10375257 -138408215 - AluSc SINE Alu 0 309 1 578 156 91 65 chr11 10375819 10375973 -138407499 + MER103 DNA DNA 1 158 -8 1761 175 13 13 chr11 10378340 10378648 -138404824 - AluJb SINE Alu -4 308 1 1881 140 18 0 chr11 10378989 10379261 -138404211 + AluJb SINE Alu 6 282 -30 390 235 0 12 chr11 10379522 10379607 -138403865 - FLAM_A SINE Alu -27 106 23 312 178 0 96 chr11 10379595 10379668 -138403804 + AluJb SINE Alu 88 153 -149 * 372 224 84 19 chr11 10380755 10380862 -138402610 - MIR3 SINE MIR -6 202 89 191 250 17 0 chr11 10381145 10381205 -138402267 + MIR SINE MIR 2 62 -200 372 233 60 21 chr11 10381208 10381354 -138402118 + MIR SINE MIR 12 160 -63 363 81 70 0 chr11 10381384 10381470 -138402002 + (TA)n Simple_repeat Simple_repeat 1 92 0 1880 161 0 17 chr11 10381470 10381769 -138401703 - AluJb SINE Alu -18 294 1 2187 124 0 7 chr11 10381780 10382079 -138401393 - AluSx SINE Alu -15 297 1 247 196 0 0 chr11 10382114 10382165 -138401307 + GA-rich Low_complexity Low_complexity 2 52 0 537 278 124 51 chr11 10383458 10383590 -138399882 - L2 LINE L2 -30 3283 3162 1132 236 167 5 chr11 10383590 10384039 -138399433 - LTR33A LTR ERVL 0 523 2 537 278 124 51 chr11 10384039 10384405 -138399067 - L2 LINE L2 -151 3162 2749 608 213 46 51 chr11 10385355 10385552 -138397920 + MIR SINE MIR 64 259 -3 627 328 25 4 chr11 10385599 10385834 -138397638 - MIR SINE MIR -17 245 6 646 281 74 0 chr11 10386307 10386510 -138396962 + MIR SINE MIR 9 226 -36 29446 94 17 50 chr11 10386795 10387350 -138396122 + L1PA7 LINE L1 12 584 -5570 2302 101 3 0 chr11 10387350 10387648 -138395824 + AluSq SINE Alu 1 299 -14 29446 94 17 50 chr11 10387648 10391128 -138392344 + L1PA7 LINE L1 584 3676 -2478 2817 3 0 3 chr11 10391128 10391428 -138392044 + AluYa5 SINE Alu 1 299 -12 29446 94 17 50 chr11 10391428 10393826 -138389646 + L1PA7 LINE L1 3676 6154 0 1889 146 0 0 chr11 10394092 10394386 -138389086 + AluSx SINE Alu 1 294 -18 1639 164 0 0 chr11 10394396 10394665 -138388807 + AluSx SINE Alu 39 307 -5 197 284 62 119 chr11 10395425 10395601 -138387871 + L2 LINE L2 3057 3222 -50 190 313 24 12 chr11 10396237 10396320 -138387152 + L3 LINE CR1 1305 1388 -189 2345 141 58 22 chr11 10396373 10396785 -138386687 - MSTA LTR MaLR 0 428 2 2210 229 86 11 chr11 10396909 10397482 -138385990 + MLT1E2 LTR MaLR 11 626 0 233 168 0 178 chr11 10398140 10398247 -138385225 - L2 LINE L2 -588 2726 2639 613 291 171 0 chr11 10398403 10398613 -138384859 - MIR SINE MIR -15 247 2 732 261 52 36 chr11 10401644 10401950 -138381522 - L1MC4a LINE L1 -1763 6045 5735 325 229 219 0 chr11 10403096 10403192 -138380280 + MIR SINE MIR 28 144 -118 3140 161 51 4 chr11 10403566 10404100 -138379372 - MER68 LTR ERV1 0 562 4 1854 137 3 44 chr11 10404565 10404880 -138378592 - AluJb SINE Alu -10 302 1 764 252 56 39 chr11 10404980 10405214 -138378258 + MIR SINE MIR 20 257 -5 264 283 164 45 chr11 10406076 10406253 -138377219 - MIR SINE MIR 0 262 65 674 237 97 43 chr11 10406539 10406818 -138376654 - L2 LINE L2 -1 3312 3019 1706 155 14 7 chr11 10407309 10407599 -138375873 - AluSx SINE Alu -20 292 1 287 259 98 27 chr11 10408179 10408291 -138375181 + L3 LINE CR1 1450 1569 -8 899 76 18 1 chr11 10409784 10409917 -138373555 - L1PA10 LINE L1 -196 5972 5855 897 80 0 43 chr11 10409917 10410052 -138373420 + L1PA11 LINE L1 6043 6174 0 2098 122 0 0 chr11 10411740 10412035 -138371437 - AluSq SINE Alu -18 295 1 287 264 36 2 chr11 10412394 10412514 -138370958 + MER117 DNA MER1_type 2 159 -38 1579 316 60 17 chr11 10413501 10414153 -138369319 - L2 LINE L2 -588 2726 2047 317 289 148 0 chr11 10414639 10414767 -138368705 - L2 LINE L2 -1 3312 3166 196 295 156 49 chr11 10414925 10415335 -138368137 - L2 LINE L2 -337 2977 2524 316 313 84 8 chr11 10415783 10415916 -138367556 + MIR SINE MIR 19 160 -65 3500 158 16 6 chr11 10415949 10416570 -138366902 + L1MB4 LINE L1 5554 6180 0 2212 97 0 3 chr11 10417971 10418269 -138365203 - AluSg1 SINE Alu -12 297 1 1960 115 33 13 chr11 10419593 10419897 -138363575 - AluSg SINE Alu 0 310 1 378 254 52 37 chr11 10419908 10420042 -138363430 + MIR SINE MIR 90 225 -37 206 274 32 0 chr11 10420653 10420715 -138362757 + (CATG)n Simple_repeat Simple_repeat 1 64 0 313 297 55 0 chr11 10421054 10421145 -138362327 - L2 LINE L2 -5 3308 3213 413 340 53 5 chr11 10421368 10421556 -138361916 + MIR3 SINE MIR 1 197 -11 436 325 143 51 chr11 10422097 10422525 -138360947 - L1ME4a LINE L1 0 6121 5655 218 283 0 0 chr11 10423021 10423067 -138360405 + polypyrimidine Low_complexity Low_complexity 4 49 0 386 239 107 50 chr11 10423518 10423677 -138359795 + MIR SINE MIR 65 232 -30 1292 190 145 21 chr11 10423870 10424243 -138359229 - Charlie1 DNA MER1_type 0 2761 2343 253 310 17 0 chr11 10424243 10424301 -138359171 - Charlie1 DNA MER1_type -2702 59 1 488 16 16 0 chr11 10424498 10424559 -138358913 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 244 250 29 0 chr11 10425086 10425154 -138358318 - L2 LINE L2 -30 3242 3173 865 235 171 7 chr11 10425201 10425482 -138357990 + L2 LINE L2 2986 3312 -1 257 227 182 11 chr11 10426852 10426940 -138356532 + MIR3 SINE MIR 99 201 -7 232 229 62 0 chr11 10427077 10427125 -138356347 + MIR3 SINE MIR 152 202 -6 * 262 328 117 8 chr11 10427123 10427251 -138356221 - MIR3 SINE MIR -51 157 16 189 0 0 0 chr11 10427278 10427299 -138356173 + (TG)n Simple_repeat Simple_repeat 2 22 0 272 235 0 0 chr11 10427460 10427511 -138355961 + L2 LINE L2 3263 3313 0 2250 129 6 24 chr11 10431529 10431870 -138351602 + MER1B DNA MER1_type 2 336 -1 224 217 0 22 chr11 10433016 10433062 -138350410 - L3b LINE CR1 -10 1573 1529 30 0 0 0 chr11 10433134 10433164 -138350308 + AT_rich Low_complexity Low_complexity 1 30 0 183 288 75 12 chr11 10433417 10433497 -138349975 - MIR SINE MIR -118 144 60 2027 113 14 0 chr11 10434060 10434352 -138349120 - AluSx SINE Alu -10 302 7 348 207 83 33 chr11 10435503 10435624 -138347848 - HAL1 LINE L1 0 2507 2381 475 261 78 22 chr11 10435713 10435905 -138347567 - L1MC4a LINE L1 -325 5796 5682 4954 233 65 27 chr11 10436622 10438161 -138345311 + L1ME4a LINE L1 37 1634 -4762 1215 204 83 6 chr11 10438175 10438513 -138344959 + L1ME4a LINE L1 4302 4665 -1550 * 1722 220 28 8 chr11 10438508 10438908 -138344564 + L1ME4a LINE L1 5595 6002 -231 275 232 29 0 chr11 10438913 10438990 -138344482 + L1MA10 LINE L1 6074 6148 -14 219 292 31 0 chr11 10439016 10439081 -138344391 + MIR3 SINE MIR 133 199 -9 2555 129 5 15 chr11 10439876 10440258 -138343214 - Tigger3b DNA MER2_type -14 1217 840 1367 97 88 23 chr11 10440258 10440474 -138342998 + MER30 DNA MER1_type 1 230 0 * 4720 102 80 26 chr11 10440474 10441276 -138342196 - Tigger3b DNA MER2_type -384 847 3 192 229 82 49 chr11 10441396 10441457 -138342015 - L2 LINE L2 -51 3221 3159 375 231 0 22 chr11 10441763 10441854 -138341618 + L1ME4a LINE L1 6101 6189 -1 216 318 15 0 chr11 10442389 10442455 -138341017 - L2 LINE L2 -653 2661 2595 716 293 104 41 chr11 10442780 10443118 -138340354 + L3 LINE CR1 988 1346 -231 654 242 108 36 chr11 10443125 10443348 -138340124 - MIR SINE MIR 0 262 24 236 356 0 11 chr11 10443397 10443484 -138339988 + L3 LINE CR1 1371 1456 -121 390 266 85 0 chr11 10443538 10443632 -138339840 + MER5A DNA MER1_type 10 111 -78 457 302 117 9 chr11 10443664 10443886 -138339586 + MIR SINE MIR 6 251 -11 2218 53 49 11 chr11 10444411 10444696 -138338776 + AluY SINE Alu 1 296 -15 2312 94 3 0 chr11 10446521 10446819 -138336653 + AluY SINE Alu 1 299 -12 1581 240 94 72 chr11 10447135 10448011 -138335461 - L2 LINE L2 -4 3309 2419 455 236 43 36 chr11 10448774 10448914 -138334558 - L2 LINE L2 -5 3308 3168 578 276 105 0 chr11 10449070 10449298 -138334174 + MLT1L LTR MaLR 1 252 -363 232 325 8 32 chr11 10449284 10449410 -138334062 + MLT1L LTR MaLR 466 588 -27 * 215 408 33 0 chr11 10449611 10449731 -138333741 - L2 LINE L2 -560 2754 2631 184 224 271 35 chr11 10449771 10449856 -138333616 + L2 LINE L2 3163 3267 -5 23 54 0 0 chr11 10450792 10450829 -138332643 + AT_rich Low_complexity Low_complexity 1 37 0 2384 78 3 0 chr11 10451115 10451408 -138332064 + AluSg SINE Alu 1 294 -16 378 0 0 0 chr11 10452516 10452558 -138330914 + (CA)n Simple_repeat Simple_repeat 2 43 0 230 298 0 0 chr11 10452994 10453051 -138330421 + L2 LINE L2 3208 3264 -8 240 35 0 0 chr11 10454497 10454526 -138328946 + (CA)n Simple_repeat Simple_repeat 2 30 0 597 318 80 29 chr11 10454580 10454819 -138328653 - MIR SINE MIR -10 252 2 26 0 0 0 chr11 10454889 10454915 -138328557 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr11 10455235 10455257 -138328215 + AT_rich Low_complexity Low_complexity 1 22 0 187 330 171 0 chr11 10455518 10455606 -138327866 + L3 LINE CR1 505 607 -970 481 312 42 89 chr11 10455979 10456383 -138327089 - L2 LINE L2 -37 3235 2851 347 293 249 9 chr11 10456406 10456635 -138326837 + L3 LINE CR1 636 919 -658 748 126 21 98 chr11 10456637 10456780 -138326692 - FLAM_C SINE Alu -10 133 2 630 310 191 40 chr11 10456798 10457327 -138326145 + L3 LINE CR1 934 1542 -35 2390 220 21 14 chr11 10457531 10458044 -138325428 - MER34 LTR ERV1 0 542 26 224 204 0 23 chr11 10458627 10458671 -138324801 + L2 LINE L2 3227 3269 -3 215 289 0 0 chr11 10461800 10461838 -138321634 - L2 LINE L2 -25 3247 3210 228 312 87 33 chr11 10461857 10461949 -138321523 - MIR SINE MIR -102 106 12 830 286 57 0 chr11 10462039 10462284 -138321188 - MIR SINE MIR -2 260 2 206 369 10 19 chr11 10462297 10462400 -138321072 + L2 LINE L2 3198 3299 -14 4708 201 43 43 chr11 10462541 10462900 -138320572 + L1ME1 LINE L1 4106 4464 -1702 2656 130 70 2 chr11 10462900 10463314 -138320158 + L1PA16 LINE L1 5718 6159 -7 4708 201 43 43 chr11 10463314 10463814 -138319658 + L1ME1 LINE L1 4464 4963 -1203 8982 170 117 11 chr11 10463814 10465401 -138318071 - MER52A LTR ERV1 0 1755 1 4708 201 43 43 chr11 10465401 10466606 -138316866 + L1ME1 LINE L1 4963 6161 -5 25 51 0 0 chr11 10466780 10466819 -138316653 + AT_rich Low_complexity Low_complexity 1 39 0 2221 96 0 10 chr11 10467286 10467606 -138315866 - AluSc SINE Alu 0 309 1 604 303 23 27 chr11 10467752 10467947 -138315525 - MIR3 SINE MIR -11 197 2 2561 60 0 0 chr11 10470061 10470361 -138313111 - AluY SINE Alu -11 300 1 1442 247 72 49 chr11 10471151 10471708 -138311764 + MLT1F1 LTR MaLR 1 567 0 1467 189 4 19 chr11 10472113 10472373 -138311099 - LTR26B LTR ERV1 0 531 276 3061 147 157 136 chr11 10472375 10472760 -138310712 + L1MC3 LINE L1 6740 7115 -670 229 323 21 10 chr11 10472760 10472856 -138310616 + MLT1F1 LTR MaLR 35 131 -436 3061 147 157 136 chr11 10472856 10473399 -138310073 + L1MC3 LINE L1 7115 7785 0 859 214 80 5 chr11 10473835 10474036 -138309436 + MIR SINE MIR 23 238 -24 365 310 239 6 chr11 10474360 10474695 -138308777 + L3 LINE CR1 1052 1464 -113 2153 116 0 0 chr11 10474703 10474988 -138308484 + AluSx SINE Alu 3 287 -25 364 204 65 21 chr11 10475005 10475098 -138308374 - MER5A DNA MER1_type -55 134 38 222 174 0 0 chr11 10475409 10475455 -138308017 + (TG)n Simple_repeat Simple_repeat 1 46 0 317 306 46 10 chr11 10477063 10477259 -138306213 - L1ME LINE L1 -383 5738 5536 21 0 0 0 chr11 10477355 10477376 -138306096 + AT_rich Low_complexity Low_complexity 1 21 0 424 302 0 0 chr11 10477464 10477580 -138305892 + MIR SINE MIR 75 190 -72 597 296 136 51 chr11 10478223 10478863 -138304609 + L2 LINE L2 2579 3271 -1 444 311 119 49 chr11 10479012 10479619 -138303853 - L2 LINE L2 -314 2999 2336 247 329 47 12 chr11 10479650 10479735 -138303737 + MIR SINE MIR 45 132 -76 340 220 159 15 chr11 10479765 10479897 -138303575 + HAL1b LINE L1 987 1137 -211 191 324 29 0 chr11 10480054 10480122 -138303350 - L2 LINE L2 -999 2315 2246 248 189 27 14 chr11 10480399 10480473 -138302999 - HAL1b LINE L1 0 1348 1274 308 228 234 18 chr11 10480532 10480699 -138302773 - HAL1b LINE L1 -211 1137 935 201 158 0 0 chr11 10480710 10480748 -138302724 + T-rich Low_complexity Low_complexity 1 38 0 251 238 42 83 chr11 10480770 10480938 -138302534 - L1ME4a LINE L1 -12 6109 5949 1984 89 48 10 chr11 10480950 10481241 -138302231 - AluY SINE Alu -9 302 1 404 330 22 60 chr11 10481513 10481695 -138301777 + MIR3 SINE MIR 5 179 -29 305 272 133 63 chr11 10482113 10482216 -138301256 + MIR SINE MIR 3 122 -140 2598 56 13 0 chr11 10482216 10482522 -138300950 - AluY SINE Alu -1 310 1 305 272 133 63 chr11 10482522 10482576 -138300896 + MIR SINE MIR 122 171 -91 1466 183 103 3 chr11 10482576 10482876 -138300596 - MER2 DNA MER2_type -15 330 1 674 286 34 49 chr11 10484217 10484470 -138299002 + MIR SINE MIR 2 249 -13 758 165 8 16 chr11 10484936 10485063 -138298409 - FLAM_A SINE Alu -5 137 12 876 185 14 28 chr11 10485086 10485302 -138298170 - AluSp SINE Alu -12 301 89 1251 84 60 0 chr11 10485404 10485571 -138297901 - L1PA7 LINE L1 -14 6140 5964 21 0 0 0 chr11 10485606 10485627 -138297845 + AT_rich Low_complexity Low_complexity 1 21 0 480 194 0 11 chr11 10485631 10485724 -138297748 + MIR SINE MIR 63 154 -108 202 188 0 0 chr11 10485956 10485988 -138297484 + polypyrimidine Low_complexity Low_complexity 5 36 0 574 322 180 7 chr11 10485988 10486542 -138296930 - L2 LINE L2 -8 3264 2613 229 217 0 0 chr11 10487015 10487061 -138296411 - MIR3 SINE MIR -3 205 160 286 273 0 0 chr11 10489113 10489168 -138294304 - L2 LINE L2 -8 3264 3210 758 301 38 15 chr11 10489904 10490166 -138293306 + Charlie8 DNA MER1_type 18 285 -2132 276 203 14 14 chr11 10490225 10490294 -138293178 + Charlie8 DNA MER1_type 2340 2408 -9 486 0 0 0 chr11 10490618 10490672 -138292800 + (GGAA)n Simple_repeat Simple_repeat 1 54 0 447 246 96 62 chr11 10490684 10490907 -138292565 - MIR SINE MIR -13 249 19 196 307 221 6 chr11 10491146 10491309 -138292163 - MIR3 SINE MIR -3 205 8 1095 46 0 0 chr11 10491908 10492038 -138291434 - L1PA5 LINE L1 -429 5726 5597 3699 46 5 0 chr11 10492038 10492467 -138291005 + L1PA5 LINE L1 5719 6151 -3 5033 125 67 57 chr11 10492512 10493296 -138290176 - MER21A LTR ERV1 0 931 135 2256 113 0 3 chr11 10493296 10493597 -138289875 + AluSx SINE Alu 1 300 -12 5033 125 67 57 chr11 10493597 10493718 -138289754 - MER21A LTR ERV1 -796 135 17 1354 142 8 25 chr11 10493870 10494110 -138289362 - AluSp SINE Alu -77 236 1 2188 124 0 0 chr11 10494111 10494410 -138289062 - AluSx SINE Alu -13 299 1 239 240 128 8 chr11 10494768 10494893 -138288579 + MIR SINE MIR 120 259 -3 249 355 0 11 chr11 10495045 10495138 -138288334 + MIR SINE MIR 19 110 -152 502 275 116 9 chr11 10495233 10495466 -138288006 + MARNA DNA Mariner 261 518 -68 801 169 0 0 chr11 10496020 10496144 -138287328 + FLAM_C SINE Alu 3 126 -17 1980 190 87 3 chr11 10498035 10498414 -138285058 - MLT1E2 LTR MaLR 0 626 216 469 136 57 23 chr11 10498438 10498526 -138284946 - AluJb SINE Alu -24 288 198 2553 59 7 0 chr11 10498538 10498841 -138284631 - AluY SINE Alu -5 306 2 486 169 124 90 chr11 10498842 10499019 -138284453 - MLT1E2 LTR MaLR -348 157 1 3238 127 91 2 chr11 10499251 10499842 -138283630 - L1MA5A LINE L1 0 6297 5654 404 291 40 29 chr11 10500490 10500754 -138282718 - MLT1J2 LTR MaLR 0 450 155 215 344 117 23 chr11 10502347 10502475 -138280997 - L2 LINE L2 -16 3256 3117 678 244 27 45 chr11 10502803 10503024 -138280448 + MIR SINE MIR 21 237 -25 249 296 112 65 chr11 10504678 10504847 -138278625 + MER5B DNA MER1_type 1 177 -1 325 324 14 14 chr11 10505259 10505404 -138278068 + CT-rich Low_complexity Low_complexity 2 146 0 201 306 16 0 chr11 10508993 10509055 -138274417 + L2 LINE L2 3209 3271 -1 382 319 84 51 chr11 10510370 10510676 -138272796 - L2 LINE L2 -14 3299 2974 2226 99 14 0 chr11 10510676 10510960 -138272512 + AluSx SINE Alu 1 288 -24 382 319 84 51 chr11 10510960 10511067 -138272405 - L2 LINE L2 -339 2974 2872 * 1224 301 163 18 chr11 10511061 10512097 -138271375 - L2 LINE L2 -951 2363 1178 342 0 0 0 chr11 10512551 10512589 -138270883 + (TA)n Simple_repeat Simple_repeat 2 39 0 372 274 210 14 chr11 10512675 10512894 -138270578 + MIR SINE MIR 1 262 0 195 327 0 0 chr11 10513552 10513604 -138269868 - MIR SINE MIR -171 91 40 292 258 113 0 chr11 10513656 10513753 -138269719 - MIR SINE MIR -63 145 38 186 277 0 0 chr11 10514213 10514260 -138269212 + L2 LINE L2 3006 3052 -220 2372 103 0 0 chr11 10514305 10514606 -138268866 - AluSx SINE Alu -11 301 1 780 227 22 16 chr11 10515770 10515955 -138267517 + MIR SINE MIR 64 249 -13 1872 140 7 26 chr11 10516230 10516537 -138266935 - AluJb SINE Alu -11 301 1 216 365 24 0 chr11 10516655 10516740 -138266732 + L2 LINE L2 3088 3174 -98 189 0 0 0 chr11 10517309 10517330 -138266142 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 980 88 8 0 chr11 10517330 10517455 -138266017 - AluSg1 SINE Alu -183 126 1 692 249 116 37 chr11 10518666 10519020 -138264452 + MLT1L LTR MaLR 6 387 -228 390 194 187 52 chr11 10520036 10520191 -138263281 - MER5B DNA MER1_type -1 177 2 360 302 99 39 chr11 10520600 10520832 -138262640 - L1ME4a LINE L1 -2 6119 5874 342 271 52 0 chr11 10520869 10520965 -138262507 - L1ME4a LINE L1 -324 5797 5697 2018 146 7 0 chr11 10523008 10523302 -138260170 - AluSx SINE Alu -16 296 1 3037 128 15 2 chr11 10523776 10524253 -138259219 - L1PA13 LINE L1 -3 6160 5678 1373 283 59 50 chr11 10524257 10524869 -138258603 - L1MEd LINE L1 -4653 1657 1052 856 255 60 82 chr11 10524869 10525284 -138258188 - MLT1I LTR MaLR -3 406 1 1373 283 59 50 chr11 10525284 10525409 -138258063 - L1MEd LINE L1 -5258 1052 930 1567 150 6 104 chr11 10525409 10525735 -138257737 - AluJo SINE Alu -18 294 1 1373 283 59 50 chr11 10525735 10525995 -138257477 - L1MEd LINE L1 -5380 930 578 873 304 88 23 chr11 10526073 10526504 -138256968 - L1MEd LINE L1 -5655 464 6 252 275 110 0 chr11 10526517 10526626 -138256846 + L1P LINE L1 5269 5389 -762 338 288 108 36 chr11 10526630 10526880 -138256592 + L1ME LINE L1 5411 5678 -443 239 317 117 0 chr11 10527287 10527407 -138256065 + L2 LINE L2 3139 3272 0 332 282 71 18 chr11 10527856 10528026 -138255446 + L2 LINE L2 2580 2758 -556 281 325 41 35 chr11 10528144 10528313 -138255159 + L2 LINE L2 2921 3090 -182 343 326 39 48 chr11 10528423 10528653 -138254819 + L2 LINE L2 2575 2802 -512 252 321 19 28 chr11 10529555 10529661 -138253811 + MER94 DNA DNA 17 121 -13 325 308 14 14 chr11 10530426 10530569 -138252903 - MIR SINE MIR -85 177 35 497 236 61 14 chr11 10530856 10531004 -138252468 + MER103 DNA DNA 10 164 -2 1874 146 43 15 chr11 10531389 10531717 -138251755 - MER1B DNA MER1_type 0 337 1 1530 194 36 47 chr11 10531719 10532079 -138251393 + MLT1A1 LTR MaLR 10 365 0 624 282 107 0 chr11 10533531 10533747 -138249725 - MIR SINE MIR -15 247 9 948 173 6 45 chr11 10535123 10535302 -138248170 - AluJb SINE Alu -138 174 3 2052 166 80 13 chr11 10535480 10535957 -138247515 - L1M4 LINE L1 -751 5395 4887 638 174 0 35 chr11 10536169 10536284 -138247188 + AluJo SINE Alu 37 147 -165 217 238 95 0 chr11 10536284 10536347 -138247125 - MIR3 SINE MIR -130 78 10 377 303 62 28 chr11 10536800 10537016 -138246456 - MIR SINE MIR -18 244 16 314 293 185 48 chr11 10537309 10537827 -138245645 - L3 LINE CR1 -235 1342 754 329 319 28 7 chr11 10538013 10538157 -138245315 + L3 LINE CR1 1422 1568 -9 1226 282 142 29 chr11 10539901 10540650 -138242822 + HAL1b LINE L1 66 898 -450 2006 234 45 19 chr11 10540664 10541198 -138242274 + MER74B LTR ERVL 65 612 -10 2421 93 6 3 chr11 10541244 10541587 -138241885 + L1P LINE L1 4571 4914 -1232 184 133 0 0 chr11 10541689 10541719 -138241753 + MIR SINE MIR 112 141 -67 1789 164 27 3 chr11 10541846 10542175 -138241297 + L1MB3 LINE L1 5845 6181 -2 1715 137 22 30 chr11 10542550 10542821 -138240651 - AluJb SINE Alu -22 290 22 275 219 16 0 chr11 10542856 10542920 -138240552 - L2 LINE L2 0 3313 3249 234 0 0 0 chr11 10542920 10542946 -138240526 + (CA)n Simple_repeat Simple_repeat 2 27 0 506 291 112 6 chr11 10542975 10543154 -138240318 - MIR SINE MIR -1 261 64 314 223 165 39 chr11 10548248 10548351 -138235121 - MIR SINE MIR -126 136 21 1052 71 0 0 chr11 10550412 10550539 -138232933 - AluSg/x SINE Alu -8 304 178 1153 226 167 15 chr11 10550904 10551306 -138232166 + MLT1K LTR MaLR 126 588 0 336 300 80 89 chr11 10551370 10551607 -138231865 + L2 LINE L2 2945 3179 -93 2313 118 7 0 chr11 10552180 10552530 -138230942 - AluSx SINE Alu 0 352 1 718 165 83 0 chr11 10552605 10552738 -138230734 + MER5A DNA MER1_type 46 189 0 231 197 105 0 chr11 10552740 10552816 -138230656 + LTR37B LTR ERV1 115 198 -270 * 776 256 47 24 chr11 10552790 10553107 -138230365 + LTR37B LTR ERV1 88 452 -16 2659 51 0 3 chr11 10553107 10553419 -138230053 - AluY SINE Alu 0 311 1 776 256 47 24 chr11 10553419 10553433 -138230039 + LTR37B LTR ERV1 452 464 -4 2782 105 50 121 chr11 10554256 10554798 -138228674 - L1MA9 LINE L1 -5 6307 5817 297 0 0 0 chr11 10554798 10554831 -138228641 + (TG)n Simple_repeat Simple_repeat 2 34 0 2782 105 50 121 chr11 10554831 10554935 -138228537 - L1MA9 LINE L1 -495 5817 5707 379 206 235 42 chr11 10556053 10556203 -138227269 + MIR SINE MIR 16 188 -74 24 0 0 0 chr11 10556237 10556261 -138227211 + AT_rich Low_complexity Low_complexity 1 24 0 1415 183 12 20 chr11 10556269 10556521 -138226951 - AluJo SINE Alu -62 250 1 338 282 91 92 chr11 10556604 10557109 -138226363 - L2 LINE L2 -6 3266 2741 404 301 120 0 chr11 10558178 10558361 -138225111 + Charlie8 DNA MER1_type 1 205 -2212 2240 124 7 0 chr11 10558957 10559264 -138224208 - AluSx SINE Alu -3 309 1 351 266 13 0 chr11 10559968 10560047 -138223425 - L2 LINE L2 -1 3271 3192 563 234 174 12 chr11 10560809 10560976 -138222496 + MIR SINE MIR 7 200 -62 387 167 65 37 chr11 10560982 10561090 -138222382 - MER53 DNA DNA 0 189 79 564 194 97 0 chr11 10561105 10561208 -138222264 - FLAM_A SINE Alu -29 113 1 183 311 256 0 chr11 10561853 10561943 -138221529 - MIR SINE MIR -107 155 43 271 252 63 54 chr11 10562644 10562755 -138220717 + MIR SINE MIR 81 192 -70 2478 47 3 44 chr11 10562927 10563244 -138220228 + AluY SINE Alu 1 304 -7 195 146 0 0 chr11 10563757 10563798 -138219674 + (TCCA)n Simple_repeat Simple_repeat 2 42 0 199 313 54 54 chr11 10563798 10563910 -138219562 - L2 LINE L2 -24 3248 3137 421 273 41 8 chr11 10564230 10564351 -138219121 + MIR SINE MIR 47 171 -91 31 26 0 0 chr11 10564408 10564446 -138219026 + AT_rich Low_complexity Low_complexity 1 38 0 428 250 116 0 chr11 10564582 10564694 -138218778 + MIR SINE MIR 116 240 -22 183 296 0 0 chr11 10565117 10565161 -138218311 + L2 LINE L2 3187 3230 -83 190 80 0 0 chr11 10565235 10565260 -138218212 - L2 LINE L2 -17 3296 3272 451 299 22 15 chr11 10565386 10565520 -138217952 + MIR SINE MIR 56 190 -72 218 289 0 0 chr11 10565716 10565768 -138217704 - MIR SINE MIR -17 245 194 773 260 54 27 chr11 10565778 10566001 -138217471 + MIR SINE MIR 34 262 0 239 325 0 26 chr11 10566002 10566079 -138217393 - MIR SINE MIR -100 162 88 200 281 0 0 chr11 10566394 10566451 -138217021 + CT-rich Low_complexity Low_complexity 3 59 0 686 287 96 9 chr11 10568575 10568805 -138214667 - MIR SINE MIR -12 250 1 564 299 111 27 chr11 10569090 10569461 -138214011 + MLT1K LTR MaLR 170 571 -17 525 287 81 6 chr11 10569606 10569780 -138213692 + MIR SINE MIR 2 188 -74 209 261 0 0 chr11 10570094 10570140 -138213332 - L2 LINE L2 -18 3254 3209 254 228 202 35 chr11 10570577 10570691 -138212781 - L2 LINE L2 0 3313 3181 593 373 159 7 chr11 10571229 10571650 -138211822 + L3 LINE CR1 986 1470 -107 230 197 115 16 chr11 10572416 10572477 -138210995 - MIR SINE MIR -118 144 78 661 296 30 15 chr11 10572657 10572881 -138210591 - MIR SINE MIR -23 239 5 459 166 80 160 chr11 10573208 10573395 -138210077 - MIR SINE MIR -56 206 35 270 281 33 52 chr11 10573858 10574011 -138209461 - MIR3 SINE MIR -30 178 29 495 225 159 0 chr11 10574355 10574493 -138208979 + MIR SINE MIR 52 211 -51 273 196 0 95 chr11 10574828 10574996 -138208476 + (CTGTG)n Simple_repeat Simple_repeat 4 155 0 1991 181 65 14 chr11 10576209 10576623 -138206849 - MER63B DNA MER1_type -1 435 1 468 307 132 60 chr11 10576719 10577441 -138206031 + L2 LINE L2 2275 3097 -175 2555 168 19 41 chr11 10577441 10577953 -138205519 - MLT1D LTR MaLR 0 505 5 468 307 132 60 chr11 10577953 10578143 -138205329 + L2 LINE L2 3097 3272 0 1065 122 0 0 chr11 10578188 10578327 -138205145 + AluSq/x SINE Alu 1 139 -174 334 254 0 0 chr11 10579526 10579593 -138203879 - L2 LINE L2 0 3313 3247 258 172 62 16 chr11 10579607 10579671 -138203801 + L2 LINE L2 3019 3085 -187 469 235 83 0 chr11 10579907 10580029 -138203443 - MIR SINE MIR -65 143 41 239 282 82 24 chr11 10580529 10580614 -138202858 + MIR3 SINE MIR 68 157 -51 690 302 108 23 chr11 10580713 10581110 -138202362 + MLT1K LTR MaLR 158 588 0 243 0 0 0 chr11 10581190 10581217 -138202255 + (CCCTAA)n Simple_repeat Simple_repeat 2 28 0 663 326 89 8 chr11 10582260 10582496 -138200976 - MIR SINE MIR -6 256 2 404 352 6 17 chr11 10583795 10583971 -138199501 + MER5B DNA MER1_type 4 177 -1 898 248 33 0 chr11 10584493 10584707 -138198765 + MER58A DNA MER1_type 1 221 -3 266 258 70 15 chr11 10585345 10585488 -138197984 + MIR SINE MIR 76 228 -34 2173 149 17 61 chr11 10586644 10587052 -138196420 + MLT1B LTR MaLR 1 390 0 4337 205 60 28 chr11 10587247 10587494 -138195978 + L1MB7 LINE L1 4186 4424 -1760 2067 133 0 0 chr11 10587494 10587821 -138195651 + AluSx SINE Alu 1 327 0 4337 205 60 28 chr11 10587821 10589065 -138194407 + L1MB7 LINE L1 4424 5803 -381 2275 107 0 3 chr11 10589065 10589356 -138194116 + AluSx SINE Alu 1 290 -22 4337 205 60 28 chr11 10589356 10589741 -138193731 + L1MB7 LINE L1 5803 6174 -10 291 241 24 12 chr11 10589810 10589893 -138193579 + MIR3 SINE MIR 108 191 -17 324 263 143 30 chr11 10590125 10590258 -138193214 - L2 LINE L2 -1 3312 3165 607 308 155 24 chr11 10592476 10592902 -138190570 + MLT1K LTR MaLR 106 587 -1 2984 145 34 6 chr11 10593711 10594058 -138189414 - L1MB5 LINE L1 -36 6138 5767 395 68 17 0 chr11 10594058 10594117 -138189355 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 2984 145 34 6 chr11 10594117 10594325 -138189147 - L1MB5 LINE L1 -407 5767 5566 389 236 130 26 chr11 10594484 10594672 -138188800 - MIR SINE MIR -47 215 9 1062 156 6 0 chr11 10595292 10595465 -138188007 - L1MB5 LINE L1 -43 6131 5958 482 271 90 30 chr11 10595465 10595660 -138187812 - MIR SINE MIR -52 210 10 564 172 35 17 chr11 10595892 10596008 -138187464 + MER103 DNA DNA 48 165 -1 1895 142 17 0 chr11 10596056 10596352 -138187120 + AluSq SINE Alu 1 301 -12 910 156 17 8 chr11 10596367 10596605 -138186867 + GA-rich Low_complexity Low_complexity 1 240 0 674 220 226 0 chr11 10596696 10596873 -138186599 + MIR SINE MIR 8 224 -38 350 307 0 10 chr11 10597671 10597772 -138185700 - MIR SINE MIR -68 140 41 681 291 58 0 chr11 10598084 10598273 -138185199 + MIR SINE MIR 60 259 -3 515 328 75 33 chr11 10599143 10599475 -138183997 + Charlie7 DNA MER1_type 108 453 -2159 381 276 162 42 chr11 10599574 10599882 -138183590 + LTR33 LTR ERVL 1 345 -176 544 180 69 65 chr11 10599918 10600163 -138183309 + Charlie7 DNA MER1_type 2366 2611 -1 4148 37 0 0 chr11 10600185 10600712 -138182760 + L1PA3 LINE L1 5657 6183 0 1611 135 113 14 chr11 10601225 10601507 -138181965 + AluSx SINE Alu 1 310 -2 1421 170 0 45 chr11 10601519 10601807 -138181665 + AluJb SINE Alu 25 299 -13 267 240 240 0 chr11 10602253 10602353 -138181119 - MIR SINE MIR -32 176 52 205 261 141 22 chr11 10602850 10602942 -138180530 + MIR SINE MIR 154 256 -6 345 300 140 33 chr11 10603957 10603984 -138179488 - MIR SINE MIR -89 173 150 1292 150 12 38 chr11 10603984 10604224 -138179248 + MER46A DNA MER2_type 1 234 -2 345 300 140 33 chr11 10604224 10604346 -138179126 - MIR SINE MIR -112 150 8 231 288 0 0 chr11 10604809 10604882 -138178590 + MER113 DNA MER1_type? 21 93 -428 1026 258 9 0 chr11 10604898 10605123 -138178349 + MIR SINE MIR 36 262 0 518 212 112 39 chr11 10605132 10605315 -138178157 + MER113 DNA MER1_type? 127 295 -226 355 236 85 19 chr11 10605315 10605421 -138178051 - MER81 DNA DNA -1 113 1 518 212 112 39 chr11 10605421 10605573 -138177899 + MER113 DNA MER1_type? 295 519 -2 332 222 111 87 chr11 10605681 10606050 -138177422 + L1ME4a LINE L1 5742 6119 -2 1844 112 65 0 chr11 10606172 10606449 -138177023 + AluSx SINE Alu 1 295 -17 209 175 0 0 chr11 10606861 10606901 -138176571 + L2 LINE L2 3256 3295 -18 270 265 60 86 chr11 10607286 10607403 -138176069 - L2 LINE L2 -1 3271 3158 329 331 63 35 chr11 10607930 10608072 -138175400 + MIR SINE MIR 92 237 -25 280 229 83 104 chr11 10608388 10608532 -138174940 + MIR SINE MIR 13 153 -55 311 270 22 0 chr11 10609047 10609136 -138174336 + (CAGAGA)n Simple_repeat Simple_repeat 3 93 0 453 286 34 20 chr11 10610223 10610370 -138173102 + MIR SINE MIR 103 251 -11 440 157 36 3 chr11 10610547 10610689 -138172783 - MER53 DNA DNA -2 187 1 421 339 83 12 chr11 10611190 10611358 -138172114 - MER5A DNA MER1_type -3 186 7 324 0 0 0 chr11 10611448 10611484 -138171988 + (TG)n Simple_repeat Simple_repeat 1 36 0 509 301 125 23 chr11 10611519 10611735 -138171737 - MIR SINE MIR -16 246 9 998 251 150 6 chr11 10611925 10612282 -138171190 + L1MC4a LINE L1 5530 5761 -403 242 281 0 0 chr11 10612282 10612367 -138171105 + (CATA)n Simple_repeat Simple_repeat 1 85 0 660 243 17 17 chr11 10612669 10612850 -138170622 - L1MD3 LINE L1 -11 7984 7804 294 320 72 16 chr11 10612888 10613013 -138170459 - L2 LINE L2 0 3272 3141 240 305 86 23 chr11 10613680 10613808 -138169664 - MIR SINE MIR -33 229 94 311 261 62 50 chr11 10613884 10614045 -138169427 + HAL1 LINE L1 26 188 -2319 1004 225 67 11 chr11 10614216 10614500 -138168972 + L1MC4a LINE L1 6272 6571 -1237 642 49 0 0 chr11 10614521 10614603 -138168869 + (TAGA)n Simple_repeat Simple_repeat 1 82 0 1232 90 0 24 chr11 10614621 10614788 -138168684 + THE1B LTR MaLR 200 362 -2 11719 86 24 5 chr11 10614790 10616341 -138167131 + THE1B-int LTR MaLR 1 1580 0 2314 121 3 62 chr11 10616341 10616508 -138166964 + THE1B LTR MaLR 1 176 -188 2678 16 0 7 chr11 10616508 10616817 -138166655 + AluYb8 SINE Alu 1 307 -11 2314 121 3 62 chr11 10616817 10617036 -138166436 + THE1B LTR MaLR 176 364 0 1069 216 127 27 chr11 10617037 10617402 -138166070 + L1MC4 LINE L1 7460 7934 -61 2075 116 3 13 chr11 10617402 10617705 -138165767 - AluSx SINE Alu -12 300 1 1069 216 127 27 chr11 10617705 10617761 -138165711 + L1MC4 LINE L1 7934 7983 -12 211 222 0 0 chr11 10618085 10618121 -138165351 + MER5B DNA MER1_type 1 36 -142 * 236 264 0 56 chr11 10618120 10618192 -138165280 - MER5B DNA MER1_type -85 93 26 248 157 17 209 chr11 10618216 10618271 -138165201 - MER5B DNA MER1_type -5 173 109 1865 107 29 0 chr11 10618271 10618543 -138164929 + AluSx SINE Alu 1 280 -32 261 0 0 0 chr11 10618543 10618572 -138164900 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 248 157 17 209 chr11 10618572 10618630 -138164842 - MER5B DNA MER1_type -67 111 81 270 267 116 27 chr11 10618693 10618839 -138164633 + HAL1 LINE L1 745 903 -1604 1302 263 25 50 chr11 10618842 10619242 -138164230 + L2 LINE L2 2921 3310 -3 687 265 130 41 chr11 10619242 10619759 -138163713 + HAL1 LINE L1 896 1458 -1049 1916 154 0 0 chr11 10620018 10620324 -138163148 + AluSx SINE Alu 1 306 -6 43 0 0 0 chr11 10620436 10620479 -138162993 + AT_rich Low_complexity Low_complexity 1 43 0 317 288 54 9 chr11 10620634 10620745 -138162727 - L2 LINE L2 -3 3269 3154 250 313 22 22 chr11 10621133 10621267 -138162205 - L2 LINE L2 -495 2819 2686 212 226 19 0 chr11 10621345 10621398 -138162074 + MIR SINE MIR 88 141 -121 460 259 90 55 chr11 10621740 10621941 -138161531 - L2 LINE L2 -832 2482 2275 237 237 26 26 chr11 10622315 10622410 -138161062 + GA-rich Low_complexity Low_complexity 2 152 0 216 0 0 0 chr11 10623075 10623099 -138160373 + (TTA)n Simple_repeat Simple_repeat 2 25 0 183 326 0 0 chr11 10623138 10623181 -138160291 + L2 LINE L2 3137 3179 -93 734 284 19 45 chr11 10623218 10623486 -138159986 - MIR SINE MIR 0 262 2 296 186 0 34 chr11 10624161 10624220 -138159252 - LTR67 LTR ERVL -9 548 492 303 122 0 0 chr11 10624431 10624480 -138158992 + (TCC)n Simple_repeat Simple_repeat 1 49 0 647 285 105 6 chr11 10624757 10624987 -138158485 - MIR SINE MIR -12 250 1 516 309 157 47 chr11 10625304 10625750 -138157722 - L3 LINE CR1 -193 1384 890 1620 257 90 23 chr11 10626283 10626805 -138156667 + L2 LINE L2 2094 2650 -664 1162 137 26 6 chr11 10626821 10627053 -138156419 - AluJb SINE Alu -6 306 26 1186 223 156 35 chr11 10627064 10627113 -138156359 + L2 LINE L2 2692 2734 -579 2031 126 7 3 chr11 10627113 10627415 -138156057 - AluSx SINE Alu -9 303 1 1186 223 156 35 chr11 10627415 10627921 -138155551 + L2 LINE L2 2734 3311 -2 182 308 0 0 chr11 10627954 10628006 -138155466 - MIR SINE MIR -101 161 110 443 252 71 24 chr11 10628709 10628836 -138154636 - L2 LINE L2 0 3272 3140 206 62 31 0 chr11 10628836 10628868 -138154604 + (CACCAT)n Simple_repeat Simple_repeat 1 33 0 883 268 68 8 chr11 10628870 10629105 -138154367 - MIR SINE MIR -5 257 9 273 306 97 73 chr11 10629351 10629557 -138153915 - MIR SINE MIR -6 256 46 581 136 64 129 chr11 10630259 10630312 -138153160 - AluJ SINE Alu -171 131 76 2247 64 40 0 chr11 10630312 10630608 -138152864 - AluY SINE Alu -3 308 1 581 136 64 129 chr11 10630608 10630694 -138152778 - AluJ SINE Alu -226 76 1 252 299 65 0 chr11 10631421 10631498 -138151974 + L2 LINE L2 2624 2705 -609 187 275 208 20 chr11 10632347 10632496 -138150976 - MER5B DNA MER1_type -1 177 1 465 310 75 16 chr11 10632959 10633343 -138150129 + MLT1L LTR MaLR 121 584 -31 378 331 93 65 chr11 10635062 10635719 -138147753 + L2 LINE L2 2596 3264 -8 2013 151 0 0 chr11 10636041 10636345 -138147127 + AluSx SINE Alu 1 304 -8 1724 144 56 105 chr11 10637109 10637519 -138145953 + MLT1B LTR MaLR 1 390 0 382 253 69 120 chr11 10637532 10637759 -138145713 - MIR SINE MIR -53 209 3 1900 167 0 0 chr11 10638854 10639166 -138144306 + AluSx SINE Alu 1 312 0 547 248 35 14 chr11 10639227 10639368 -138144104 + MER117 DNA MER1_type 1 144 -53 2229 94 3 3 chr11 10639465 10639774 -138143698 - AluSp SINE Alu -2 311 3 418 154 0 0 chr11 10641031 10641123 -138142349 - AluJo SINE Alu 0 311 220 1134 164 0 0 chr11 10641123 10641300 -138142172 - AluJo SINE Alu -135 177 1 1586 144 55 74 chr11 10641712 10641965 -138141507 - MLT1F1 LTR MaLR -261 306 59 713 110 0 0 chr11 10641965 10642065 -138141407 + HY3 scRNA scRNA 1 100 -1 1586 144 55 74 chr11 10642065 10642123 -138141349 - MLT1F1 LTR MaLR -508 59 1 301 332 135 52 chr11 10642137 10642366 -138141106 - L2 LINE L2 -45 3227 2980 1879 125 14 0 chr11 10642781 10643061 -138140411 + AluSx SINE Alu 24 307 -5 189 305 17 0 chr11 10644256 10644315 -138139157 - L2 LINE L2 -91 3222 3163 247 313 30 0 chr11 10645061 10645160 -138138312 - LTR67 LTR ERVL -17 540 439 232 257 86 38 chr11 10645374 10645479 -138137993 - LTR67 LTR ERVL -349 208 99 201 319 124 9 chr11 10645626 10645739 -138137733 - MIR SINE MIR -34 228 103 2019 169 0 3 chr11 10645752 10646065 -138137407 - AluJb SINE Alu 0 312 1 2124 101 10 42 chr11 10646813 10647121 -138136351 + AluSq SINE Alu 1 298 -15 4486 125 5 65 chr11 10647245 10647980 -138135492 + LTR8 LTR ERV1 1 691 0 333 0 0 0 chr11 10648004 10648041 -138135431 + (TG)n Simple_repeat Simple_repeat 2 38 0 392 196 54 71 chr11 10648042 10648154 -138135318 + MLT1F1 LTR MaLR 88 197 -370 210 71 0 0 chr11 10648154 10648182 -138135290 + (TC)n Simple_repeat Simple_repeat 2 29 0 589 247 80 7 chr11 10648187 10648337 -138135135 + MER96 DNA MER1_type? 12 172 -3 391 297 16 104 chr11 10648848 10649097 -138134375 - MIR SINE MIR -34 228 2 1967 122 18 0 chr11 10649181 10649467 -138134005 + AluSx SINE Alu 2 292 -20 366 249 127 24 chr11 10649666 10649831 -138133641 + MIR SINE MIR 25 206 -56 32 57 0 0 chr11 10649831 10649884 -138133588 + AT_rich Low_complexity Low_complexity 1 53 0 938 161 0 0 chr11 10650277 10650414 -138133058 + FRAM SINE Alu 1 137 -39 210 71 0 0 chr11 10650417 10650445 -138133027 + (GGAA)n Simple_repeat Simple_repeat 3 30 0 287 254 40 111 chr11 10650673 10650860 -138132612 - MLT1L LTR MaLR -360 228 87 203 139 38 13 chr11 10650905 10650984 -138132488 + (TG)n Simple_repeat Simple_repeat 1 81 0 207 250 26 13 chr11 10650994 10651070 -138132402 + (TATG)n Simple_repeat Simple_repeat 2 78 0 216 0 0 0 chr11 10651122 10651146 -138132326 + (TTTTA)n Simple_repeat Simple_repeat 3 26 0 1183 106 10 60 chr11 10651146 10651345 -138132127 - L1PB2 LINE L1 -11 6140 5952 197 278 67 44 chr11 10652221 10652311 -138131161 + MIR SINE MIR 110 201 -61 * 336 219 105 44 chr11 10652305 10652419 -138131053 - L2 LINE L2 0 3313 3193 1986 109 24 10 chr11 10652751 10653044 -138130428 + AluSx SINE Alu 9 305 -7 2102 131 0 13 chr11 10653044 10653357 -138130115 + AluSg SINE Alu 1 309 -1 451 257 128 57 chr11 10653369 10653735 -138129737 + L2 LINE L2 2024 2415 -899 723 218 0 0 chr11 10653811 10653935 -138129537 - FLAM_C SINE Alu -18 125 2 633 317 71 44 chr11 10653953 10654386 -138129086 + L2 LINE L2 2645 3088 -184 240 280 106 26 chr11 10654389 10654578 -138128894 + L1MC4a LINE L1 4726 4929 -1217 628 126 39 19 chr11 10654864 10654967 -138128505 + FLAM_C SINE Alu 29 133 -10 686 289 117 57 chr11 10655051 10655544 -138127928 + L1MC4a LINE L1 5297 5830 -1978 1299 189 12 114 chr11 10655544 10655690 -138127782 + AluSp SINE Alu 1 96 -217 1937 130 7 4 chr11 10655690 10655967 -138127505 + AluSx SINE Alu 1 278 -34 1299 189 12 114 chr11 10655967 10656154 -138127318 + AluSp SINE Alu 96 300 -13 686 289 117 57 chr11 10656154 10656224 -138127248 + L1MC4a LINE L1 5830 5894 -1914 496 239 43 43 chr11 10656477 10656640 -138126832 + LTR41 LTR ERVL 10 172 -601 1894 126 20 7 chr11 10657112 10657406 -138126066 + L1PA13 LINE L1 5866 6163 0 710 209 0 20 chr11 10657429 10657582 -138125890 + MIR SINE MIR 104 253 -9 222 327 62 18 chr11 10657574 10657622 -138125850 + L3 LINE CR1 1165 1209 -368 * 2205 134 0 0 chr11 10657622 10657921 -138125551 + AluSx SINE Alu 1 299 -13 222 327 62 18 chr11 10657921 10657985 -138125487 + L3 LINE CR1 1209 1282 -295 438 235 17 59 chr11 10658057 10658176 -138125296 - MER81 DNA DNA 0 114 1 190 345 35 17 chr11 10658203 10658319 -138125153 + L3 LINE CR1 1425 1542 -35 676 287 56 3 chr11 10658342 10658564 -138124908 + MIR SINE MIR 20 249 -13 819 225 22 6 chr11 10658609 10658791 -138124681 + MER5A DNA MER1_type 5 189 0 1971 158 19 3 chr11 10659608 10659931 -138123541 + LTR32 LTR ERVL 15 342 -129 1007 128 0 6 chr11 10659990 10660146 -138123326 + LTR32 LTR ERVL 317 471 0 817 180 0 0 chr11 10660717 10660839 -138122633 + FLAM_C SINE Alu 2 123 -20 278 188 165 24 chr11 10661148 10661233 -138122239 + MIR SINE MIR 164 260 -2 639 261 117 51 chr11 10661296 10661553 -138121919 - L1MEd LINE L1 -5509 610 337 334 191 43 21 chr11 10661683 10661714 -138121758 - L1MEd LINE L1 -6001 118 89 333 0 0 0 chr11 10661714 10661751 -138121721 + (TG)n Simple_repeat Simple_repeat 2 38 0 334 191 43 21 chr11 10661751 10661813 -138121659 - L1MEd LINE L1 -6030 89 23 2464 112 6 6 chr11 10662140 10662480 -138120992 + L1PB1 LINE L1 5803 6142 -9 2420 157 8 18 chr11 10662546 10662940 -138120532 + MLT1B LTR MaLR 1 390 0 865 180 0 7 chr11 10663056 10663206 -138120266 + AluJb SINE Alu 140 288 -24 563 77 70 4 chr11 10663206 10663499 -138119973 + (TA)n Simple_repeat Simple_repeat 1 312 0 914 198 6 0 chr11 10663569 10663726 -138119746 + FRAM SINE Alu 1 158 -18 1214 300 31 80 chr11 10664134 10664821 -138118651 + L2 LINE L2 2054 2706 -608 1975 132 7 20 chr11 10664824 10665127 -138118345 - AluSx SINE Alu -13 299 1 403 292 146 10 chr11 10665701 10665893 -138117579 + L2 LINE L2 2836 3053 -219 1095 167 82 26 chr11 10666114 10666459 -138117013 + Charlie5 DNA MER1_type 5 2530 -82 2164 100 7 0 chr11 10666459 10666760 -138116712 - AluSx SINE Alu -9 303 1 426 182 52 0 chr11 10668181 10668258 -138115214 - L1MB7 LINE L1 -56 6128 6048 205 29 59 0 chr11 10669735 10669769 -138113703 + (TA)n Simple_repeat Simple_repeat 2 37 0 561 309 100 9 chr11 10669892 10670112 -138113360 + MIR SINE MIR 20 259 -3 622 228 18 0 chr11 10670117 10670231 -138113241 - FLAM_A SINE Alu -16 117 2 245 277 60 24 chr11 10670259 10670342 -138113130 - MIR SINE MIR -81 127 42 2259 209 8 31 chr11 10670473 10670989 -138112483 - L1ME1 LINE L1 -4 6162 5659 812 144 0 0 chr11 10672104 10672215 -138111257 + AluJ SINE Alu 17 127 -185 2248 67 14 0 chr11 10672315 10672598 -138110874 - L1PA13 LINE L1 -4 6159 5873 1855 170 10 0 chr11 10673068 10673362 -138110110 + AluJb SINE Alu 1 297 -15 1502 173 46 11 chr11 10673369 10673653 -138109819 + AluJo SINE Alu 1 294 -18 4254 260 103 22 chr11 10673713 10674666 -138108806 - L2 LINE L2 -2 3311 2436 2349 184 70 11 chr11 10674666 10675107 -138108365 + LTR24 LTR ERV1 1 467 0 4254 260 103 22 chr11 10675107 10675792 -138107680 - L2 LINE L2 -877 2436 1526 752 218 151 67 chr11 10676425 10676737 -138106735 - MER46C DNA MER2_type 0 338 1 422 252 96 69 chr11 10676883 10677101 -138106371 - MLT1L LTR MaLR -175 440 217 976 164 31 6 chr11 10677112 10677271 -138106201 - MER20 DNA MER1_type -2 217 55 345 255 48 75 chr11 10677296 10677484 -138105988 - MLT1L LTR MaLR -432 183 1 851 226 0 0 chr11 10677526 10677685 -138105787 + AluJ SINE Alu 137 295 -17 240 338 103 15 chr11 10678283 10678419 -138105053 - L2 LINE L2 0 3272 3125 1887 161 0 13 chr11 10678786 10679084 -138104388 + AluJb SINE Alu 3 296 -16 379 209 136 0 chr11 10679086 10679196 -138104276 - MIR SINE MIR -52 210 86 762 157 50 0 chr11 10679337 10679477 -138103995 + L1MB4 LINE L1 6034 6180 0 234 285 87 23 chr11 10679665 10679837 -138103635 - L1ME LINE L1 -292 5829 5647 21 0 0 0 chr11 10680109 10680130 -138103342 + AT_rich Low_complexity Low_complexity 1 21 0 1326 130 10 0 chr11 10680224 10680424 -138103048 + MER68 LTR ERV1 17 218 -344 1266 215 97 35 chr11 10681976 10682316 -138101156 - MLT1A1 LTR MaLR 0 365 5 408 281 54 18 chr11 10682631 10682798 -138100674 - L1ME3A LINE L1 -314 5856 5684 515 276 49 49 chr11 10682802 10683045 -138100427 - L1ME3A LINE L1 -2035 4111 3869 266 327 10 29 chr11 10683075 10683179 -138100293 + LTR16C LTR ERVL 75 176 -315 211 234 0 31 chr11 10684374 10684438 -138099034 + CT-rich Low_complexity Low_complexity 2 63 0 347 149 172 0 chr11 10684995 10685082 -138098390 - L1MC2 LINE L1 -5 6339 6238 245 211 18 0 chr11 10685727 10685784 -138097688 + tRNA-Thr-ACT tRNA tRNA 8 65 -12 231 289 13 26 chr11 10691093 10691169 -138092303 + tRNA-Ala-GCG tRNA tRNA 1 75 0 540 265 141 103 chr11 10692286 10692684 -138090788 + L2 LINE L2 2590 3029 -284 2615 55 0 0 chr11 10692684 10692993 -138090479 - AluY SINE Alu -2 309 1 540 265 141 103 chr11 10692993 10693280 -138090192 + L2 LINE L2 3029 3304 -9 268 167 0 0 chr11 10693468 10693516 -138089956 + FLAM_A SINE Alu 86 133 0 1425 142 36 113 chr11 10693531 10693868 -138089604 + AluJo SINE Alu 2 312 0 193 284 148 23 chr11 10693879 10693967 -138089505 + MIR SINE MIR 153 251 -11 34 0 0 22 chr11 10695921 10695943 -138087529 + AT_rich Low_complexity Low_complexity 1 22 -22 725 180 0 33 chr11 10695943 10696065 -138087407 + FLAM_C SINE Alu 1 118 -15 34 0 0 22 chr11 10696065 10696087 -138087385 + AT_rich Low_complexity Low_complexity 22 44 0 189 0 74 0 chr11 10696198 10696225 -138087247 + (TTTTG)n Simple_repeat Simple_repeat 2 180 0 2048 131 0 0 chr11 10696225 10696507 -138086965 - AluSx SINE Alu -1 309 2 736 219 65 69 chr11 10697635 10697881 -138085591 + MER112 DNA MER1_type 12 256 -4 197 62 0 31 chr11 10698405 10698437 -138085035 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 493 253 136 32 chr11 10699373 10699594 -138083878 + MIR SINE MIR 11 254 -8 2236 104 0 31 chr11 10699678 10699996 -138083476 + AluSg SINE Alu 1 308 -2 21 0 0 56 chr11 10702801 10702820 -138080652 + AT_rich Low_complexity Low_complexity 1 19 -15 2191 111 7 7 chr11 10702820 10703126 -138080346 + AluSp SINE Alu 1 306 -7 21 0 0 56 chr11 10703126 10703142 -138080330 + AT_rich Low_complexity Low_complexity 19 34 0 2217 109 0 23 chr11 10703485 10703789 -138079683 + AluSx SINE Alu 2 298 -14 2118 131 13 3 chr11 10704352 10704650 -138078822 + AluSx SINE Alu 1 301 -11 220 258 45 0 chr11 10704827 10704916 -138078556 + GA-rich Low_complexity Low_complexity 2 94 0 257 211 195 44 chr11 10705182 10705357 -138078115 + MIR SINE MIR 22 217 -45 1556 70 15 10 chr11 10706805 10707037 -138076435 - AluSp SINE Alu 0 313 95 280 217 121 0 chr11 10707286 10707369 -138076103 - L2 LINE L2 0 3272 3180 2124 134 3 0 chr11 10707437 10707743 -138075729 + AluSx SINE Alu 1 307 -5 791 131 0 0 chr11 10707997 10708104 -138075368 + FLAM_C SINE Alu 2 108 -35 249 231 58 0 chr11 10709281 10709333 -138074139 - L1ME3A LINE L1 -75 6095 6041 360 273 70 31 chr11 10711034 10711050 -138072422 + MIR3 SINE MIR 3 17 -191 1686 163 0 11 chr11 10711050 10711326 -138072146 + AluJo SINE Alu 1 273 -39 360 273 70 31 chr11 10711326 10711437 -138072035 + MIR3 SINE MIR 17 135 -73 23 0 0 0 chr11 10711567 10711590 -138071882 + AT_rich Low_complexity Low_complexity 1 23 0 261 241 193 0 chr11 10712334 10712417 -138071055 + MIR SINE MIR 48 146 -62 1943 130 0 3 chr11 10712460 10712776 -138070696 - AluSx SINE Alu 0 315 1 878 147 0 22 chr11 10712917 10713048 -138070424 + AluJo/FLAM SINE Alu 1 129 -169 2399 72 3 0 chr11 10713048 10713340 -138070132 - AluSp SINE Alu -19 294 2 2267 111 7 0 chr11 10713403 10713729 -138069743 - AluSx SINE Alu 0 332 5 2260 113 7 0 chr11 10714209 10714511 -138068961 + AluSx SINE Alu 1 304 -8 235 303 131 16 chr11 10714908 10715030 -138068442 + L2 LINE L2 3137 3272 0 211 363 81 0 chr11 10716121 10716245 -138067227 - L2 LINE L2 -1739 1575 1442 425 229 93 34 chr11 10716378 10716496 -138066976 - MER5A DNA MER1_type -56 133 9 657 278 18 39 chr11 10716812 10717093 -138066379 - L2 LINE L2 -2900 414 140 2322 99 3 3 chr11 10717461 10717765 -138065707 - AluSx SINE Alu -8 304 1 1579 195 7 0 chr11 10718279 10718571 -138064901 - AluJb SINE Alu -16 296 3 457 193 30 66 chr11 10718852 10718958 -138064514 + L1M4 LINE L1 4395 4494 -1652 2191 122 3 3 chr11 10718958 10719262 -138064210 + AluJb SINE Alu 1 304 -8 457 193 30 66 chr11 10719262 10719321 -138064151 + L1M4 LINE L1 4494 4554 -1592 1697 155 37 0 chr11 10719410 10719713 -138063759 + AluJb SINE Alu 1 313 0 353 349 67 7 chr11 10719805 10719954 -138063518 + MIR SINE MIR 27 184 -78 892 173 28 56 chr11 10720145 10720324 -138063148 + MER69A DNA AcHobo 2 175 -2 2370 77 13 7 chr11 10720357 10720667 -138062805 + AluSx SINE Alu 1 312 0 2103 163 94 25 chr11 10721006 10721443 -138062029 - MLT1C LTR MaLR 0 467 1 192 324 27 0 chr11 10721634 10721708 -138061764 + MIR SINE MIR 15 90 -172 2030 138 26 64 chr11 10721730 10722120 -138061352 + THE1C LTR MaLR 1 375 0 339 268 35 81 chr11 10722140 10722338 -138061134 + MIR SINE MIR 69 257 -5 636 263 129 32 chr11 10722432 10722931 -138060541 + L2 LINE L2 2738 3299 -14 331 307 222 15 chr11 10723664 10723934 -138059538 - L2 LINE L2 -924 2390 2065 338 235 292 25 chr11 10724132 10724375 -138059097 - L2 LINE L2 -1267 2047 1740 1964 107 21 17 chr11 10724674 10724965 -138058507 - AluSp SINE Alu -21 292 1 330 207 200 64 chr11 10727111 10727251 -138056221 + MER5A DNA MER1_type 1 159 -30 1736 132 59 24 chr11 10727368 10727655 -138055817 - AluJb SINE Alu -15 297 1 195 42 0 0 chr11 10728089 10728113 -138055359 + (A)n Simple_repeat Simple_repeat 1 24 0 1968 130 10 10 chr11 10731557 10731858 -138051614 + AluSx SINE Alu 1 301 -11 24 32 0 0 chr11 10732102 10732133 -138051339 + AT_rich Low_complexity Low_complexity 1 31 0 2265 88 3 7 chr11 10734430 10734725 -138048747 - AluSx SINE Alu -18 294 1 771 201 107 12 chr11 10735151 10735320 -138048152 - MER5A DNA MER1_type -1 188 4 825 141 8 31 chr11 10735323 10735451 -138048021 - FLAM_C SINE Alu -7 126 2 243 71 0 143 chr11 10735925 10735981 -138047491 - Alu SINE Alu -170 132 85 235 179 0 75 chr11 10737734 10737801 -138045671 + GA-rich Low_complexity Low_complexity 1 62 0 23 68 0 0 chr11 10739709 10739753 -138043719 + AT_rich Low_complexity Low_complexity 1 44 0 2094 135 0 0 chr11 10740001 10740290 -138043182 - AluSx SINE Alu -21 291 3 21 36 0 0 chr11 10740292 10740320 -138043152 + AT_rich Low_complexity Low_complexity 1 28 0 1482 171 19 15 chr11 10740482 10740745 -138042727 + AluJo SINE Alu 32 295 -17 1771 161 14 0 chr11 10740746 10741026 -138042446 + AluJb SINE Alu 2 285 -27 216 242 0 55 chr11 10741246 10741337 -138042135 + L2 LINE L2 2211 2296 -1018 632 283 115 4 chr11 10741367 10741611 -138041861 + MER102a DNA MER1_type 44 314 -16 604 264 66 0 chr11 10741684 10741851 -138041621 + MIR SINE MIR 37 214 -48 214 387 52 11 chr11 10741962 10742153 -138041319 + L2 LINE L2 2442 2640 -674 2313 108 0 3 chr11 10742213 10742519 -138040953 + AluSg SINE Alu 1 305 -5 1134 174 0 6 chr11 10742585 10742763 -138040709 + MER5B DNA MER1_type 2 178 0 195 337 59 0 chr11 10743136 10743237 -138040235 + L2 LINE L2 2728 2834 -480 518 239 220 62 chr11 10743318 10743577 -138039895 - L2 LINE L2 -775 2539 2240 256 247 21 86 chr11 10743936 10743984 -138039488 - L2 LINE L2 -607 2707 2666 1969 154 7 3 chr11 10743984 10744289 -138039183 + AluJb SINE Alu 5 310 -2 256 247 21 86 chr11 10744289 10744333 -138039139 - L2 LINE L2 -648 2666 2621 2139 278 89 51 chr11 10744494 10745683 -138037789 + L2 LINE L2 2035 3252 -61 1909 168 0 3 chr11 10745709 10746013 -138037459 + AluSx SINE Alu 1 303 -9 274 226 16 0 chr11 10746086 10746148 -138037324 + L2 LINE L2 3251 3313 0 209 293 83 53 chr11 10746146 10746279 -138037193 - MIR SINE MIR -59 203 67 * 1357 173 108 138 chr11 10746384 10746905 -138036567 - MLT1D LTR MaLR 0 505 1 341 259 25 0 chr11 10747041 10747122 -138036350 - L2 LINE L2 0 3272 3190 465 244 0 0 chr11 10747142 10747232 -138036240 + MER94 DNA DNA 45 134 0 2138 117 35 132 chr11 10747556 10747817 -138035655 + Tigger2a DNA MER2_type 1 285 -2423 1963 141 0 54 chr11 10747817 10748130 -138035342 + AluJb SINE Alu 1 296 -16 882 147 0 22 chr11 10748133 10748269 -138035203 - AluJo/FLAM SINE Alu -169 133 1 2138 117 35 132 chr11 10748269 10748482 -138034990 + Tigger2a DNA MER2_type 287 433 -1 189 0 0 0 chr11 10748711 10748732 -138034740 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1920 138 0 7 chr11 10748732 10749014 -138034458 - AluSx SINE Alu -32 280 1 23 101 0 0 chr11 10749016 10749095 -138034377 + AT_rich Low_complexity Low_complexity 1 79 0 1678 107 99 12 chr11 10749101 10749383 -138034089 + AluSx SINE Alu 11 314 0 1694 158 59 33 chr11 10749669 10749973 -138033499 - AluJo SINE Alu 0 312 1 1934 169 36 2 chr11 10750050 10750464 -138033008 + L1 LINE L1 3140 3567 -2579 2460 166 98 35 chr11 10750482 10750972 -138032500 - L1 LINE L1 -2647 3499 3042 432 0 0 0 chr11 10750972 10751020 -138032452 + (TG)n Simple_repeat Simple_repeat 1 48 0 2003 114 4 4 chr11 10751027 10751299 -138032173 - AluSq SINE Alu -41 272 1 2460 166 98 35 chr11 10751299 10751461 -138032011 - L1 LINE L1 -3109 3037 2797 1236 128 190 0 chr11 10751500 10751711 -138031761 + MER21A LTR ERV1 13 263 -668 2702 146 56 79 chr11 10751717 10752286 -138031186 + MER21A LTR ERV1 376 931 0 581 198 63 0 chr11 10752967 10753078 -138030394 + FLAM_C SINE Alu 2 119 -24 842 168 0 0 chr11 10753390 10753515 -138029957 - FLAM_C SINE Alu -8 125 1 221 311 54 14 chr11 10753602 10753676 -138029796 + L2 LINE L2 3229 3305 -8 454 249 305 5 chr11 10753732 10753929 -138029543 - MIR SINE MIR -4 258 3 207 345 64 36 chr11 10754134 10754244 -138029228 - MER91A DNA MER1_type -62 134 22 863 227 0 0 chr11 10754529 10754701 -138028771 - FRAM SINE Alu -1 175 4 198 128 0 0 chr11 10754719 10754758 -138028714 + (A)n Simple_repeat Simple_repeat 1 39 0 1843 211 3 37 chr11 10754766 10755025 -138028447 + MLT1A1 LTR MaLR 1 245 -120 2189 103 10 10 chr11 10755025 10755326 -138028146 - AluSx SINE Alu -11 301 1 1843 211 3 37 chr11 10755326 10755440 -138028032 + MLT1A1 LTR MaLR 245 361 -4 22 0 0 0 chr11 10755521 10755543 -138027929 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chr11 10755732 10755759 -138027713 + (A)n Simple_repeat Simple_repeat 1 27 0 26 0 0 0 chr11 10755935 10755961 -138027511 + AT_rich Low_complexity Low_complexity 1 26 0 605 241 0 35 chr11 10756151 10756292 -138027180 - L2 LINE L2 0 3272 3137 2312 135 21 26 chr11 10757081 10757458 -138026014 - THE1C LTR MaLR 0 375 1 10449 119 26 38 chr11 10757458 10758577 -138024895 - THE1C-int LTR MaLR 0 1580 484 2043 131 0 13 chr11 10758577 10758875 -138024597 - AluSx SINE Alu -18 294 1 10449 119 26 38 chr11 10758875 10759354 -138024118 - THE1C-int LTR MaLR -1096 484 1 2236 135 18 61 chr11 10759354 10759397 -138024075 - THE1C LTR MaLR 0 375 332 2373 82 3 0 chr11 10759397 10759702 -138023770 + AluY SINE Alu 1 306 -5 2236 135 18 61 chr11 10759702 10760050 -138023422 - THE1C LTR MaLR -43 332 1 205 291 81 12 chr11 10760330 10760416 -138023056 + MIR3 SINE MIR 104 195 -13 506 302 132 19 chr11 10760453 10760665 -138022807 - MIR SINE MIR -21 241 6 2583 54 0 0 chr11 10760841 10761139 -138022333 + AluY SINE Alu 1 298 -13 1648 194 14 0 chr11 10761625 10761919 -138021553 - AluJb SINE Alu -8 304 7 1938 125 44 0 chr11 10762221 10762518 -138020954 + AluSq SINE Alu 1 309 0 1606 193 3 10 chr11 10762583 10762717 -138020755 + AluJo SINE Alu 1 134 -178 2186 137 0 0 chr11 10762717 10763017 -138020455 + AluSx SINE Alu 1 300 -12 1606 193 3 10 chr11 10763017 10763187 -138020285 + AluJo SINE Alu 134 303 -9 345 345 79 23 chr11 10763266 10763570 -138019902 + ERVL LTR ERVL 299 619 -5145 2252 96 93 31 chr11 10763655 10764008 -138019464 - THE1C LTR MaLR 0 375 1 2174 200 107 14 chr11 10764030 10764515 -138018957 + MLT1F LTR MaLR 5 534 -8 3395 106 22 22 chr11 10764626 10765119 -138018353 + MER1A DNA MER1_type 37 529 0 343 358 0 6 chr11 10765150 10765323 -138018149 + ERVL LTR ERVL 960 1131 -4633 2024 138 14 0 chr11 10765427 10765723 -138017749 - AluSx SINE Alu -11 301 2 3863 107 24 0 chr11 10765734 10766266 -138017206 - L1PA14 LINE L1 -1 6160 5616 892 188 6 12 chr11 10766339 10766499 -138016973 - FRAM SINE Alu -17 159 1 260 268 134 31 chr11 10767093 10767220 -138016252 + ERVL LTR ERVL 1852 1991 -3663 422 224 31 10 chr11 10767222 10767320 -138016152 + ERVL LTR ERVL 4565 4664 -1100 2625 120 26 0 chr11 10767327 10767711 -138015761 - L1PA14 LINE L1 -91 6070 5677 619 243 78 34 chr11 10767763 10767969 -138015503 + MER58C DNA MER1_type 1 215 0 467 317 65 9 chr11 10767979 10768209 -138015263 + ERVL LTR ERVL 4721 4963 -801 629 154 95 53 chr11 10768401 10768538 -138014934 + L1MD3 LINE L1 7812 7959 -36 2096 109 53 0 chr11 10768538 10768822 -138014650 - AluSx SINE Alu -13 299 1 629 154 95 53 chr11 10768822 10768853 -138014619 + L1MD3 LINE L1 7959 7987 -8 654 183 17 35 chr11 10768854 10768969 -138014503 + FLAM_C SINE Alu 2 114 -29 22 35 0 0 chr11 10768987 10769016 -138014456 + AT_rich Low_complexity Low_complexity 1 29 0 23 68 0 0 chr11 10769184 10769228 -138014244 + AT_rich Low_complexity Low_complexity 1 44 0 869 147 0 0 chr11 10769228 10769344 -138014128 - FLAM_C SINE Alu -15 118 3 23 0 0 0 chr11 10769569 10769592 -138013880 + AT_rich Low_complexity Low_complexity 1 23 0 1906 152 3 0 chr11 10769595 10769891 -138013581 - AluJb SINE Alu -10 302 6 192 200 0 0 chr11 10770001 10770036 -138013436 + MIR SINE MIR 195 229 -33 1586 171 36 43 chr11 10770708 10771013 -138012459 + AluJo SINE Alu 1 303 -9 2170 108 7 0 chr11 10771463 10771749 -138011723 - AluSg SINE Alu -22 288 1 1801 195 142 33 chr11 10771967 10772310 -138011162 + MLT1F1 LTR MaLR 1 411 -156 2519 61 0 0 chr11 10772310 10772607 -138010865 - AluY SINE Alu -14 297 1 1801 195 142 33 chr11 10772607 10772784 -138010688 + MLT1F1 LTR MaLR 411 567 0 384 204 159 0 chr11 10772786 10772899 -138010573 + MIR SINE MIR 117 247 -15 373 250 52 46 chr11 10773023 10773204 -138010268 - MIR SINE MIR -49 213 34 445 276 29 0 chr11 10773224 10773329 -138010143 - L2 LINE L2 -12 3301 3194 24 0 0 0 chr11 10774622 10774646 -138008826 + AT_rich Low_complexity Low_complexity 1 24 0 555 282 219 15 chr11 10775278 10775692 -138007780 + L2 LINE L2 2726 3244 -69 318 341 133 9 chr11 10776066 10776292 -138007180 - MER112 DNA MER1_type -4 256 3 1762 181 7 0 chr11 10776700 10776999 -138006473 - AluJo SINE Alu -11 301 1 1409 192 130 11 chr11 10777008 10777269 -138006203 - AluJo SINE Alu -10 292 1 376 174 257 28 chr11 10777270 10777379 -138006093 - MIR3 SINE MIR -41 167 34 1466 173 36 11 chr11 10777584 10777861 -138005611 + AluJo SINE Alu 11 294 -18 929 190 0 6 chr11 10777934 10778092 -138005380 - AluJb SINE Alu -155 157 1 195 215 65 129 chr11 10779560 10779622 -138003850 + MIR SINE MIR 161 217 -45 2140 113 0 44 chr11 10779622 10779758 -138003714 + AluSx SINE Alu 1 141 -171 1654 125 0 62 chr11 10779758 10780030 -138003442 + AluSx SINE Alu 1 255 -57 2140 113 0 44 chr11 10780030 10780212 -138003260 + AluSx SINE Alu 141 305 -7 195 215 65 129 chr11 10780212 10780242 -138003230 + MIR SINE MIR 217 247 -15 289 329 58 15 chr11 10780410 10780547 -138002925 - MIR SINE MIR -6 256 114 231 328 15 76 chr11 10781443 10781574 -138001898 - L2 LINE L2 -337 2935 2813 1869 310 52 47 chr11 10781817 10783588 -137999884 - Charlie1 DNA MER1_type -236 2525 746 814 165 0 15 chr11 10784330 10784463 -137999009 - MER58A DNA MER1_type 0 167 37 371 296 186 20 chr11 10785664 10785863 -137997609 - MIR SINE MIR -19 243 12 289 259 76 61 chr11 10787247 10787378 -137996094 - MER5A DNA MER1_type 0 189 57 23 33 0 0 chr11 10788381 10788411 -137995061 + AT_rich Low_complexity Low_complexity 1 30 0 2063 61 34 4 chr11 10788611 10788875 -137994597 - L1PA5 LINE L1 -2 6152 5881 1601 162 80 52 chr11 10788997 10789362 -137994110 + THE1C LTR MaLR 1 375 0 777 107 214 0 chr11 10789482 10789613 -137993859 + AluSp SINE Alu 153 311 -2 829 301 44 72 chr11 10789613 10790293 -137993179 + ERVL LTR ERVL 785 1445 -4319 2025 142 7 20 chr11 10791326 10791628 -137991844 - AluJb SINE Alu -14 298 1 796 176 0 0 chr11 10791712 10791843 -137991629 - FLAM_C SINE Alu 0 143 13 226 246 0 0 chr11 10792049 10792114 -137991358 - HAL1 LINE L1 0 2507 2443 341 152 3 5 chr11 10792173 10792247 -137991225 + FLAM SINE Alu 72 131 -2 2732 124 13 52 chr11 10792265 10792726 -137990746 + MER65A LTR ERV1 1 443 -2 1177 132 11 11 chr11 10792950 10793124 -137990348 + AluSg/x SINE Alu 123 296 -14 2338 101 0 0 chr11 10793124 10793420 -137990052 + AluSx SINE Alu 1 296 -16 26 0 0 0 chr11 10793753 10793779 -137989693 + AT_rich Low_complexity Low_complexity 1 26 0 1862 152 0 3 chr11 10793779 10794069 -137989403 - AluSx SINE Alu -23 289 1 203 183 67 50 chr11 10794155 10794215 -137989257 - MIR SINE MIR -98 164 104 181 248 191 57 chr11 10794680 10794821 -137988651 + MIR SINE MIR 56 215 -47 28 61 0 0 chr11 10795172 10795221 -137988251 + AT_rich Low_complexity Low_complexity 1 49 0 671 168 55 45 chr11 10795331 10795363 -137988109 + L1 LINE L1 4614 4644 -1502 2378 100 0 0 chr11 10795363 10795663 -137987809 + AluSc SINE Alu 1 300 -9 671 168 55 45 chr11 10795663 10795962 -137987510 + L1 LINE L1 4644 5202 -944 1404 173 79 11 chr11 10795965 10796231 -137987241 + AluJo SINE Alu 16 299 -13 5231 155 19 28 chr11 10796231 10796890 -137986582 + L1MD1 LINE L1 5279 5928 -314 1650 121 55 8 chr11 10796890 10797146 -137986326 - AluSx SINE Alu -44 268 1 5231 155 19 28 chr11 10797146 10797443 -137986029 + L1MD1 LINE L1 5928 6226 -16 409 201 87 27 chr11 10797502 10797651 -137985821 + L1MC5 LINE L1 7783 7940 -21 22 0 0 0 chr11 10797665 10797687 -137985785 + AT_rich Low_complexity Low_complexity 1 22 0 355 308 100 51 chr11 10797864 10798355 -137985117 + L1M4 LINE L1 4492 5006 -1140 1923 177 99 48 chr11 10798526 10799023 -137984449 + LTR64 LTR ERVK 20 541 -17 1045 171 0 0 chr11 10799068 10799232 -137984240 - AluJb SINE Alu -13 299 136 1035 121 54 0 chr11 10799342 10799491 -137983981 - LTR47A LTR ERVL -295 157 1 495 234 39 19 chr11 10799491 10799645 -137983827 + L1 LINE L1 2771 2927 -3219 539 283 67 87 chr11 10799743 10800132 -137983340 - MLT1I LTR MaLR -13 396 16 510 176 0 0 chr11 10801745 10801830 -137981642 + Charlie1a DNA MER1_type 57 141 -1314 4941 169 60 57 chr11 10801830 10802894 -137980578 + MER11C LTR ERVK 1 1067 -4 593 241 147 75 chr11 10802947 10803267 -137980205 - MLT1A1 LTR MaLR -22 343 1 * 6294 164 52 15 chr11 10803267 10804484 -137978988 + Charlie1a DNA MER1_type 193 1455 0 924 229 233 7 chr11 10805094 10805395 -137978077 + MLT1K LTR MaLR 218 586 -2 2362 89 0 16 chr11 10805666 10805979 -137977493 - AluSc SINE Alu -1 308 1 237 146 0 0 chr11 10806299 10806347 -137977125 + (TG)n Simple_repeat Simple_repeat 2 49 0 555 253 129 0 chr11 10806570 10806740 -137976732 + MIR SINE MIR 1 192 -70 543 239 100 32 chr11 10807032 10807283 -137976189 + L1ME4a LINE L1 5617 5884 -237 1664 169 14 27 chr11 10807288 10807583 -137975889 + AluJo SINE Alu 1 291 -21 25 51 0 0 chr11 10807915 10807954 -137975518 + AT_rich Low_complexity Low_complexity 1 39 0 200 339 0 0 chr11 10807988 10808053 -137975419 + MIR SINE MIR 186 250 -12 526 321 75 0 chr11 10808070 10808282 -137975190 - MIR SINE MIR -22 240 13 333 47 0 0 chr11 10810349 10810392 -137973080 + (TG)n Simple_repeat Simple_repeat 2 44 0 302 301 0 12 chr11 10811223 10811306 -137972166 - MLT1K LTR MaLR -437 151 70 189 80 0 0 chr11 10812501 10812526 -137970946 + MIR SINE MIR 83 107 -101 36 23 0 0 chr11 10812594 10812637 -137970835 + AT_rich Low_complexity Low_complexity 1 43 0 464 281 118 0 chr11 10812754 10812889 -137970583 + MER117 DNA MER1_type 10 160 -37 588 269 70 70 chr11 10812978 10813320 -137970152 - MLT1I LTR MaLR -26 383 42 961 107 5 131 chr11 10813470 10813676 -137969796 + MER4B LTR ERV1 3 182 -428 246 354 15 54 chr11 10813761 10813891 -137969581 - L2 LINE L2 -12 3260 3136 * 501 242 92 172 chr11 10813888 10814617 -137968855 + L2 LINE L2 1226 1881 -1433 6964 73 45 0 chr11 10814617 10815575 -137967897 - L1PA13 LINE L1 -3 6160 5195 501 242 92 172 chr11 10815575 10815688 -137967784 + L2 LINE L2 1881 2001 -1313 204 40 0 0 chr11 10815778 10815803 -137967669 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 5001 91 9 36 chr11 10815819 10816519 -137966953 + LTR8 LTR ERV1 1 681 -10 690 304 185 5 chr11 10816593 10817004 -137966468 + L2 LINE L2 2445 2929 -385 1699 210 8 20 chr11 10817130 10817530 -137965942 + L1M4 LINE L1 2380 2774 -3372 1044 131 98 61 chr11 10817531 10817625 -137965847 - LTR47A LTR ERVL 0 452 363 1844 166 3 3 chr11 10817625 10817926 -137965546 - AluJo SINE Alu -11 301 1 1044 131 98 61 chr11 10817926 10818045 -137965427 - LTR47A LTR ERVL -89 363 231 1269 171 72 24 chr11 10818163 10818219 -137965253 - L1M2c LINE L1 -4760 2089 2037 2161 136 0 0 chr11 10818219 10818514 -137964958 - AluSx SINE Alu -17 295 1 1269 171 72 24 chr11 10818514 10818609 -137964863 - L1M2c LINE L1 -4812 2037 1948 2520 48 0 13 chr11 10818609 10818921 -137964551 - AluY SINE Alu -3 308 1 1269 171 72 24 chr11 10818921 10819127 -137964345 - L1M2c LINE L1 -4901 1948 1688 1160 193 60 0 chr11 10819144 10819362 -137964110 - AluJo SINE Alu -27 285 55 1921 137 33 10 chr11 10819400 10819699 -137963773 - AluSx SINE Alu -6 306 1 304 215 93 47 chr11 10819699 10819806 -137963666 - L1ME LINE L1 -5956 114 3 8785 175 29 11 chr11 10819834 10820619 -137962853 - L1PB2 LINE L1 0 6151 5382 1687 166 53 3 chr11 10820619 10820902 -137962570 - AluJb SINE Alu -15 297 1 8785 175 29 11 chr11 10820902 10822850 -137960622 - L1PB2 LINE L1 -769 5382 3374 693 283 109 32 chr11 10822878 10823426 -137960046 - L1M4 LINE L1 -1926 4220 3641 273 180 0 33 chr11 10823500 10823561 -137959911 - MIR SINE MIR -94 168 110 838 146 0 36 chr11 10823861 10823998 -137959474 - FLAM_C SINE Alu -1 132 1 737 237 104 73 chr11 10824063 10824623 -137958849 + LTR50 LTR ERVL 1 462 -61 255 213 20 27 chr11 10824742 10824892 -137958580 + CT-rich Low_complexity Low_complexity 1 149 0 383 307 17 28 chr11 10825153 10825332 -137958140 + CT-rich Low_complexity Low_complexity 1 177 0 363 255 137 116 chr11 10825416 10825978 -137957494 + L1M2 LINE L1 791 1382 -5467 377 245 109 71 chr11 10826316 10826500 -137956972 - MIR SINE MIR -42 220 30 2029 107 4 0 chr11 10826789 10827061 -137956411 + AluSx SINE Alu 1 273 -39 1222 153 149 89 chr11 10827170 10827451 -137956021 - AluJo SINE Alu -4 298 1 213 381 53 59 chr11 10827871 10828228 -137955244 + L2 LINE L2 2866 3220 -52 529 291 27 85 chr11 10828306 10828443 -137955029 + MIR SINE MIR 20 137 -125 1881 108 52 4 chr11 10828443 10828712 -137954760 + AluSq SINE Alu 5 286 -27 529 291 27 85 chr11 10828712 10828832 -137954640 + MIR SINE MIR 137 262 0 207 334 117 20 chr11 10829141 10829304 -137954168 - MIR3 SINE MIR -14 194 2 2071 123 0 7 chr11 10830522 10830815 -137952657 + AluSx SINE Alu 1 291 -21 884 238 33 9 chr11 10830837 10831051 -137952421 - MIR SINE MIR -12 250 32 266 277 117 0 chr11 10831197 10831291 -137952181 - L2 LINE L2 -1 3312 3208 2105 125 3 13 chr11 10832021 10832325 -137951147 + AluSx SINE Alu 1 301 -11 323 137 0 0 chr11 10832473 10832524 -137950948 + Alu SINE Alu 248 298 -2 2746 141 54 21 chr11 10832769 10833181 -137950291 + L1MA9 LINE L1 5815 6247 -65 2177 123 3 0 chr11 10833181 10833483 -137949989 + AluSc SINE Alu 1 303 -6 2746 141 54 21 chr11 10833483 10833552 -137949920 + L1MA9 LINE L1 6247 6312 0 912 313 43 54 chr11 10833584 10834044 -137949428 + MLT1K LTR MaLR 132 586 -2 446 196 9 45 chr11 10834228 10834340 -137949132 + MIR SINE MIR 148 255 -7 277 204 6 204 chr11 10834804 10834895 -137948577 + MIR SINE MIR 20 62 -200 1627 156 52 7 chr11 10834895 10835188 -137948284 - AluJb SINE Alu 0 308 4 277 204 6 204 chr11 10835188 10835271 -137948201 + MIR SINE MIR 62 160 -102 821 267 112 21 chr11 10835295 10835670 -137947802 + MLT1I LTR MaLR 1 409 0 281 347 14 4 chr11 10835816 10835957 -137947515 + L1ME4a LINE L1 5455 5596 -617 581 250 96 35 chr11 10835985 10836377 -137947095 + L1ME4a LINE L1 5689 6119 -2 214 170 43 0 chr11 10836408 10836471 -137947001 + (CAGAGA)n Simple_repeat Simple_repeat 1 65 0 1465 208 36 0 chr11 10836727 10837035 -137946437 + MER33 DNA MER1_type 6 324 0 2598 132 54 12 chr11 10837815 10838224 -137945248 + MSTB LTR MaLR 1 426 0 10065 178 21 2 chr11 10838224 10839844 -137943628 + MSTB-int LTR MaLR 1 1651 0 2302 136 39 13 chr11 10839844 10840233 -137943239 + MSTB LTR MaLR 1 399 -27 1286 161 28 0 chr11 10840259 10840470 -137943002 - AluJo SINE Alu -11 301 85 247 105 79 0 chr11 10840471 10840509 -137942963 + MSTB LTR MaLR 386 426 0 2261 107 10 0 chr11 10840565 10840864 -137942608 + AluSx SINE Alu 1 302 -10 232 171 0 100 chr11 10840871 10840941 -137942531 + L1ME4a LINE L1 5369 5431 -690 877 266 119 16 chr11 10841057 10841436 -137942036 + L1ME4a LINE L1 5493 5910 -211 1935 173 73 67 chr11 10841617 10842033 -137941439 + MLT1D LTR MaLR 24 445 -60 1983 149 10 10 chr11 10842033 10842328 -137941144 + AluJb SINE Alu 1 295 -17 1935 173 73 67 chr11 10842328 10842390 -137941082 + MLT1D LTR MaLR 445 505 0 453 19 0 0 chr11 10843031 10843085 -137940387 + (CA)n Simple_repeat Simple_repeat 1 54 0 230 267 0 12 chr11 10843264 10843350 -137940122 + GA-rich Low_complexity Low_complexity 4 88 0 2454 232 65 65 chr11 10844105 10844880 -137938592 - MER21B LTR ERV1 -70 793 19 448 194 9 83 chr11 10844878 10844986 -137938486 - MER21B LTR ERV1 -757 106 7 * 201 74 0 0 chr11 10845086 10845113 -137938359 + (TC)n Simple_repeat Simple_repeat 1 27 0 279 200 31 15 chr11 10845233 10845298 -137938174 - MLT1K LTR MaLR -342 246 181 945 254 88 3 chr11 10845411 10845694 -137937778 - MER46C DNA MER2_type -22 316 10 590 209 23 25 chr11 10845755 10845902 -137937570 + MER5A DNA MER1_type 4 133 -45 2431 89 0 0 chr11 10846260 10846564 -137936908 + AluSq SINE Alu 1 304 -9 2324 164 42 22 chr11 10847483 10847831 -137935641 + MLT1C LTR MaLR 1 362 -105 3193 122 106 76 chr11 10847831 10848447 -137935025 - MER51A LTR ERV1 0 634 1 2324 164 42 22 chr11 10848447 10848556 -137934916 + MLT1C LTR MaLR 362 467 0 422 329 122 18 chr11 10848861 10849189 -137934283 + L2 LINE L2 2373 2734 -580 253 345 12 12 chr11 10849489 10849573 -137933899 - L2 LINE L2 -22 3291 3208 * 443 308 207 53 chr11 10849560 10849826 -137933646 + L2 LINE L2 2965 3271 -1 729 281 60 50 chr11 10850631 10851194 -137932278 + L1MC4 LINE L1 7317 8016 -26 880 185 11 34 chr11 10851237 10851415 -137932057 + FRAM SINE Alu 1 173 -3 2407 41 45 0 chr11 10852590 10852880 -137930592 + AluY SINE Alu 1 303 -8 2135 132 3 0 chr11 10853508 10853811 -137929661 - AluSg SINE Alu -6 304 1 333 71 0 0 chr11 10854004 10854046 -137929426 + 5S rRNA rRNA 2 43 -78 1886 142 30 48 chr11 10854240 10854538 -137928934 + L1MB3 LINE L1 5846 6139 -32 4229 102 29 46 chr11 10854538 10854895 -137928577 + L1MA5A LINE L1 5616 5964 -333 2414 68 0 40 chr11 10854895 10855219 -137928253 + AluY SINE Alu 1 311 0 4229 102 29 46 chr11 10855219 10855543 -137927929 + L1MA5A LINE L1 5964 6292 -5 1886 142 30 48 chr11 10855543 10855576 -137927896 + L1MB3 LINE L1 6139 6171 0 401 258 67 8 chr11 10856066 10856186 -137927286 - MIR3 SINE MIR -72 136 10 284 244 24 55 chr11 10856420 10856547 -137926925 + GA-rich Low_complexity Low_complexity 3 125 0 217 273 45 0 chr11 10856610 10856676 -137926796 - L2 LINE L2 -4 3309 3241 1711 195 17 0 chr11 10856744 10857046 -137926426 + AluJo SINE Alu 1 307 -5 308 271 0 0 chr11 10857079 10857164 -137926308 + MIR SINE MIR 92 176 -86 486 282 14 21 chr11 10857415 10857557 -137925915 + MER5A DNA MER1_type 28 168 -21 252 247 84 84 chr11 10857580 10857758 -137925714 + L2 LINE L2 2913 3090 -182 842 161 36 12 chr11 10858844 10859012 -137924460 - MER5A DNA MER1_type 0 189 18 2220 169 111 31 chr11 10859612 10859795 -137923677 - MLT1D LTR MaLR 0 505 338 1668 164 45 14 chr11 10859795 10860081 -137923391 - AluJo SINE Alu -17 295 1 2220 169 111 31 chr11 10860081 10860346 -137923126 - MLT1D LTR MaLR -167 338 21 510 280 78 10 chr11 10860587 10860780 -137922692 - L1ME LINE L1 -301 5820 5615 345 179 36 0 chr11 10860830 10860886 -137922586 - MLT1D LTR MaLR -447 58 1 186 274 51 68 chr11 10860887 10861004 -137922468 + MIR SINE MIR 117 231 -31 204 40 0 0 chr11 10861114 10861139 -137922333 + (TG)n Simple_repeat Simple_repeat 1 25 0 458 312 29 29 chr11 10861234 10861404 -137922068 - MER5B DNA MER1_type -2 176 7 387 0 0 0 chr11 10862239 10862282 -137921190 + (CA)n Simple_repeat Simple_repeat 1 43 0 737 301 7 1 chr11 10862294 10862499 -137920973 - MIR SINE MIR -56 206 2 406 211 24 0 chr11 10862830 10862953 -137920519 + CT-rich Low_complexity Low_complexity 2 127 0 244 122 0 61 chr11 10863734 10863783 -137919689 - MIR SINE MIR -57 151 106 1803 214 52 33 chr11 10864097 10864555 -137918917 + MLT1C LTR MaLR 1 467 0 498 311 80 64 chr11 10865151 10865541 -137917931 + MLT1L LTR MaLR 159 586 -29 3123 190 25 11 chr11 10865541 10866099 -137917373 + MLT1F1 LTR MaLR 1 566 -1 498 311 80 64 chr11 10866099 10866122 -137917350 + MLT1L LTR MaLR 586 607 -8 474 115 26 0 chr11 10866661 10866739 -137916733 - L1MA5 LINE L1 -5 6295 6216 274 339 197 0 chr11 10867434 10867561 -137915911 + L2 LINE L2 3112 3263 -9 639 259 7 0 chr11 10869214 10869361 -137914111 + MER5B DNA MER1_type 1 148 -30 234 235 71 35 chr11 10869302 10869387 -137914085 - MER5A DNA MER1_type -90 99 12 * 1448 230 54 48 chr11 10870102 10870580 -137912892 - HAL1 LINE L1 -6 2501 2021 33641 98 15 58 chr11 10870595 10876953 -137906519 - L1PA7 LINE L1 -67 6087 12 801 264 129 25 chr11 10876968 10877331 -137906141 - HAL1 LINE L1 -475 2032 1632 1053 275 62 10 chr11 10877343 10877634 -137905838 - MER45C DNA AcHobo -647 306 1 372 274 119 79 chr11 10877718 10877992 -137905480 + L1M2 LINE L1 4972 5233 -1079 1890 157 7 3 chr11 10877992 10878279 -137905193 + AluJo SINE Alu 1 288 -24 372 274 119 79 chr11 10878279 10878826 -137904646 + L1M2 LINE L1 5233 5825 -487 2017 132 184 11 chr11 10878843 10879207 -137904265 + MSTA LTR MaLR 1 427 -1 2685 121 2 48 chr11 10879210 10879647 -137903825 + MSTA-int LTR MaLR 3 419 -1161 1007 185 0 0 chr11 10879673 10879830 -137903642 + FRAM SINE Alu 1 153 -23 249 246 109 9 chr11 10879836 10879946 -137903526 + L1M4 LINE L1 5249 5369 -777 6945 145 21 29 chr11 10879975 10881138 -137902334 + MSTA-int LTR MaLR 427 1580 0 2092 128 177 11 chr11 10881138 10881505 -137901967 + MSTA LTR MaLR 1 428 0 5419 247 80 26 chr11 10882326 10883922 -137899550 + L1M3c LINE L1 1359 2968 -4528 * 8661 230 85 13 chr11 10883906 10886601 -137896871 + L1M3c LINE L1 2871 5369 -2196 2221 105 0 13 chr11 10886601 10886905 -137896567 + AluSq SINE Alu 1 300 -13 8661 230 85 13 chr11 10886905 10887092 -137896380 + L1M3c LINE L1 5369 5541 -2024 1801 181 0 25 chr11 10887092 10887406 -137896066 + AluJb SINE Alu 1 306 -6 8661 230 85 13 chr11 10887406 10887681 -137895791 + L1M3c LINE L1 5541 5795 -1770 180 0 0 0 chr11 10887681 10887701 -137895771 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 8661 230 85 13 chr11 10887701 10887835 -137895637 + L1M3c LINE L1 5795 6591 -974 354 45 0 0 chr11 10888681 10888725 -137894747 + (GA)n Simple_repeat Simple_repeat 1 44 0 1020 210 48 24 chr11 10889389 10889637 -137893835 - MIR SINE MIR -7 255 2 324 250 169 29 chr11 10889644 10889780 -137893692 - MIR3 SINE MIR -31 177 23 517 304 78 11 chr11 10890359 10890550 -137892922 - MIR SINE MIR -10 252 49 225 280 0 0 chr11 10890678 10890728 -137892744 + (CATA)n Simple_repeat Simple_repeat 3 52 0 526 339 38 29 chr11 10890750 10890989 -137892483 - MIR SINE MIR 0 262 22 287 354 23 0 chr11 10891099 10891229 -137892243 + L2 LINE L2 2921 3053 -219 482 185 0 0 chr11 10891371 10891452 -137892020 - LTR40a LTR ERVL -7 512 432 180 338 0 0 chr11 10891474 10891542 -137891930 + L2 LINE L2 3203 3270 -2 613 243 37 0 chr11 10891764 10891900 -137891572 + FLAM_A SINE Alu 1 141 -1 256 250 0 44 chr11 10891903 10891971 -137891501 + G-rich Low_complexity Low_complexity 4 68 0 303 229 98 16 chr11 10892017 10892139 -137891333 - FRAM SINE Alu -29 137 6 26 50 0 0 chr11 10892399 10892439 -137891033 + AT_rich Low_complexity Low_complexity 1 40 0 546 281 25 12 chr11 10892629 10892789 -137890683 - MER20B DNA MER1_type -621 162 1 1837 33 0 24 chr11 10892793 10893006 -137890466 + L1PA3 LINE L1 5948 6155 0 3263 190 52 50 chr11 10893142 10893946 -137889526 - L1MD2 LINE L1 -1 6358 5553 2459 68 0 3 chr11 10893971 10894280 -137889192 - AluY SINE Alu -3 308 1 1402 174 39 12 chr11 10894281 10894539 -137888933 - L1MC/D LINE L1 -425 5817 5553 614 234 30 41 chr11 10894556 10894753 -137888719 - L1MC/D LINE L1 -816 5330 5136 25429 87 8 21 chr11 10894853 10898437 -137885035 - L1P LINE L1 -2004 4142 606 460 209 48 0 chr11 10898438 10898543 -137884929 - L1 LINE L1 -813 5333 5224 270 316 13 0 chr11 10898839 10898918 -137884554 - L2 LINE L2 -217 3055 2976 186 256 0 0 chr11 10899053 10899096 -137884376 + L3 LINE CR1 1112 1154 -423 597 245 92 22 chr11 10899667 10899851 -137883621 + Charlie8 DNA MER1_type 306 502 -1915 27 29 0 0 chr11 10900755 10900789 -137882683 + AT_rich Low_complexity Low_complexity 1 34 0 623 252 124 18 chr11 10902540 10902766 -137880706 + MIR SINE MIR 13 262 0 1945 236 35 27 chr11 10904270 10904757 -137878715 + MLT1D LTR MaLR 1 491 -14 3363 195 75 10 chr11 10905401 10906189 -137877283 - L1MC4 LINE L1 0 8042 7204 1308 159 49 4 chr11 10906190 10906598 -137876874 - LTR54 LTR ERV1 0 510 2 1449 209 62 57 chr11 10906599 10906779 -137876693 - L1MC4 LINE L1 -838 7204 7026 2357 99 10 0 chr11 10906779 10907081 -137876391 - AluSq SINE Alu -8 305 1 1449 209 62 57 chr11 10907081 10907324 -137876148 - L1MC4 LINE L1 -1016 7026 6703 1068 153 45 0 chr11 10907326 10907503 -137875969 + AluJo SINE Alu 1 185 -127 518 88 0 0 chr11 10907509 10907577 -137875895 + AluS SINE Alu 23 90 -222 3183 202 39 14 chr11 10907583 10908281 -137875191 - L1MC4a LINE L1 -1779 6029 5315 619 230 0 43 chr11 10908289 10908428 -137875044 - FLAM_A SINE Alu 0 133 1 2304 82 3 7 chr11 10908477 10908771 -137874701 - AluY SINE Alu -18 293 1 219 279 96 39 chr11 10909514 10909618 -137873854 + L2 LINE L2 3150 3259 -13 583 298 47 62 chr11 10909631 10910052 -137873420 - L2 LINE L2 -40 3232 2806 430 302 95 0 chr11 10910052 10910231 -137873241 + MER91A DNA MER1_type 1 196 0 583 298 47 62 chr11 10910231 10910276 -137873196 - L2 LINE L2 -466 2806 2770 844 185 26 32 chr11 10910276 10910465 -137873007 - MER5A DNA MER1_type 0 189 2 583 298 47 62 chr11 10910465 10910498 -137872974 - L2 LINE L2 -502 2770 2738 198 0 0 0 chr11 10910944 10910966 -137872506 + (TG)n Simple_repeat Simple_repeat 2 23 0 964 85 0 14 chr11 10911226 10911367 -137872105 - MER85 DNA T2_type 0 139 1 250 197 79 13 chr11 10912572 10912648 -137870824 + MIR SINE MIR 105 185 -77 700 232 40 15 chr11 10913344 10913542 -137869930 + L1ME3A LINE L1 3 205 -5914 342 0 0 0 chr11 10913545 10913583 -137869889 + (TG)n Simple_repeat Simple_repeat 2 39 0 383 288 37 42 chr11 10913686 10913877 -137869595 + L1ME3A LINE L1 682 871 -5248 1739 107 37 0 chr11 10914002 10914245 -137869227 - AluSc SINE Alu -57 252 1 530 210 64 13 chr11 10914247 10914404 -137869068 + L1ME3A LINE L1 903 1067 -5052 204 97 0 0 chr11 10914407 10914438 -137869034 + (TG)n Simple_repeat Simple_repeat 2 32 0 216 271 0 0 chr11 10914482 10914530 -137868942 + (TG)n Simple_repeat Simple_repeat 1 48 0 650 311 102 44 chr11 10914538 10915505 -137867967 + L1ME3A LINE L1 1131 1746 -744 2386 94 0 3 chr11 10915512 10915819 -137867653 + AluSx SINE Alu 1 306 -6 1010 276 104 42 chr11 10915914 10916872 -137866600 + L1ME3A LINE L1 2237 3254 -2875 1187 268 136 35 chr11 10917023 10917479 -137865993 - REP3 LTR ERV -47 515 14 1029 140 6 0 chr11 10917479 10917650 -137865822 - L1P LINE L1 -1733 4413 4242 226 174 0 0 chr11 10917647 10917693 -137865779 + L1P LINE L1 4803 4848 -1298 * 538 279 124 21 chr11 10917781 10918201 -137865271 + L1ME3A LINE L1 4742 5204 -925 292 272 95 17 chr11 10918226 10918501 -137864971 + L1ME3A LINE L1 5240 5592 -543 1398 218 122 26 chr11 10918504 10918971 -137864501 - LTR33 LTR ERVL 0 521 10 584 299 26 29 chr11 10918995 10919303 -137864169 + L1ME3A LINE L1 5606 5912 -241 22 0 0 0 chr11 10919442 10919464 -137864008 + AT_rich Low_complexity Low_complexity 1 22 0 239 252 36 18 chr11 10919473 10919584 -137863888 + L1MC4 LINE L1 7929 8041 -1 810 244 119 5 chr11 10919672 10919873 -137863599 - MER58A DNA MER1_type 0 224 1 2275 103 0 31 chr11 10919926 10920247 -137863225 - AluSx SINE Alu -1 311 1 230 211 35 18 chr11 10920707 10920764 -137862708 - MLT1G1 LTR MaLR 0 595 538 222 200 0 20 chr11 10921062 10921112 -137862360 + MIR SINE MIR 192 240 -22 439 200 0 12 chr11 10921151 10921231 -137862241 + AluJ/FLAM SINE Alu 4 82 -230 266 158 73 37 chr11 10921679 10921761 -137861711 + (CTGGGG)n Simple_repeat Simple_repeat 5 89 0 931 218 49 0 chr11 10921942 10922167 -137861305 - MIR SINE MIR -11 251 16 387 252 149 7 chr11 10922194 10922346 -137861126 - MIR3 SINE MIR -31 177 4 880 289 42 60 chr11 10923125 10923627 -137859845 + L3 LINE CR1 822 1314 -263 221 312 38 37 chr11 10923629 10923777 -137859695 + MIR SINE MIR 4 153 -83 1867 232 131 77 chr11 10925139 10926458 -137857014 - L1MC5 LINE L1 -398 7957 6525 598 283 48 54 chr11 10926579 10926915 -137856557 - LTR16C LTR ERVL 0 491 158 1646 266 42 24 chr11 10927175 10927724 -137855748 - L1MC5 LINE L1 -1871 6331 5773 595 276 39 6 chr11 10928013 10928194 -137855278 - MIR SINE MIR -71 191 5 230 335 116 6 chr11 10928772 10928945 -137854527 + MIR SINE MIR 56 247 -15 2791 133 22 27 chr11 10930506 10931105 -137852367 - MER4E LTR ERV1 0 766 1 331 280 75 94 chr11 10931371 10931785 -137851687 - L2 LINE L2 -38 3234 2829 965 203 112 0 chr11 10931950 10932147 -137851325 + MER58A DNA MER1_type 1 219 -5 288 297 102 0 chr11 10932887 10933005 -137850467 - L3 LINE CR1 -268 1309 1180 8330 213 47 38 chr11 10933645 10936133 -137847339 - L1MC5 LINE L1 -1147 5393 2929 2363 92 3 0 chr11 10936133 10936436 -137847036 - AluSq SINE Alu -9 304 1 8330 213 47 38 chr11 10936436 10937311 -137846161 - L1MC5 LINE L1 -3611 2929 2063 798 167 8 0 chr11 10937311 10937443 -137846029 + FLAM_C SINE Alu 1 133 0 8330 213 47 38 chr11 10937443 10937853 -137845619 - L1MC5 LINE L1 -4477 2063 1658 2404 95 0 7 chr11 10937853 10938158 -137845314 - AluY SINE Alu -8 303 1 8330 213 47 38 chr11 10938158 10939069 -137844403 - L1MC5 LINE L1 -4882 1658 664 2507 167 142 2 chr11 10939089 10939539 -137843933 + MLT2B2 LTR ERVL 1 513 -2 2196 209 12 39 chr11 10939540 10940027 -137843445 - L1MC5 LINE L1 -6059 481 8 13639 113 56 37 chr11 10941003 10942123 -137841349 + Tigger1 DNA MER2_type 6 1103 -1315 1786 136 73 3 chr11 10942123 10942453 -137841019 + L1MA5 LINE L1 5948 6300 0 13639 113 56 37 chr11 10942453 10942751 -137840721 + Tigger1 DNA MER2_type 1103 1394 -1024 1522 107 236 8 chr11 10942751 10942993 -137840479 - AluSp SINE Alu -14 299 3 13639 113 56 37 chr11 10942993 10943777 -137839695 + Tigger1 DNA MER2_type 1394 2251 -167 981 182 12 0 chr11 10943814 10943979 -137839493 - FRAM SINE Alu -12 164 1 1288 152 0 5 chr11 10943980 10944177 -137839295 + Tigger1 DNA MER2_type 2221 2416 -2 314 224 95 43 chr11 10944422 10944538 -137838934 + MLT2F LTR ERVL 39 160 -503 1630 180 131 13 chr11 10944888 10945101 -137838371 - MLT1C LTR MaLR -34 415 228 213 108 0 0 chr11 10945101 10945138 -137838334 + (TG)n Simple_repeat Simple_repeat 2 38 0 1630 180 131 13 chr11 10945138 10945312 -137838160 - MLT1C LTR MaLR -221 228 1 199 304 167 11 chr11 10945312 10945588 -137837884 - L2 LINE L2 -988 2326 2008 474 237 106 85 chr11 10947081 10947364 -137836108 - LTR16A LTR ERVL -99 351 63 1317 197 66 71 chr11 10947387 10947767 -137835705 + MLT1B LTR MaLR 2 379 -11 393 39 0 0 chr11 10947857 10947908 -137835564 + (TC)n Simple_repeat Simple_repeat 1 51 0 281 340 10 0 chr11 10948017 10948120 -137835352 - MLT1K LTR MaLR -324 264 161 1782 173 0 23 chr11 10948248 10948549 -137834923 + AluJo SINE Alu 1 294 -18 372 261 147 25 chr11 10948557 10948714 -137834758 + MIR SINE MIR 73 248 -14 279 228 38 0 chr11 10948870 10948949 -137834523 - MIR SINE MIR -120 142 61 229 364 70 7 chr11 10949804 10949947 -137833525 + MIR SINE MIR 18 169 -93 1037 241 24 16 chr11 10950173 10950493 -137832979 + L1ME3 LINE L1 5851 6183 -1 207 245 19 0 chr11 10950530 10950583 -137832889 + (TTA)n Simple_repeat Simple_repeat 1 54 0 1233 153 39 39 chr11 10950732 10950961 -137832511 - MER2 DNA MER2_type -113 232 4 360 0 0 0 chr11 10950964 10951004 -137832468 + (TG)n Simple_repeat Simple_repeat 1 40 0 1296 234 124 30 chr11 10951035 10951509 -137831963 + MLT1F1 LTR MaLR 49 567 0 252 247 118 21 chr11 10951509 10951602 -137831870 + MLT1F-int LTR MaLR 1 102 -1269 6773 151 35 42 chr11 10951633 10952884 -137830588 - Ricksha_b DNA DNA 0 1254 13 806 259 17 44 chr11 10952911 10952983 -137830489 + MLT1F-int LTR MaLR 293 365 -1006 1417 209 23 67 chr11 10952983 10953198 -137830274 - MLT1A2 LTR MaLR -4 370 178 2114 136 13 3 chr11 10953198 10953506 -137829966 - AluJb SINE Alu -1 311 1 1417 209 23 67 chr11 10953506 10953677 -137829795 - MLT1A2 LTR MaLR -196 178 1 806 259 17 44 chr11 10953677 10953898 -137829574 + MLT1F-int LTR MaLR 365 578 -793 713 124 0 0 chr11 10954343 10954448 -137829024 + AluSp/q SINE Alu 207 311 -2 596 282 30 101 chr11 10954559 10954995 -137828477 + MLT1F-int LTR MaLR 961 1365 -6 2237 176 79 30 chr11 10955011 10955506 -137827966 + MLT1F LTR MaLR 24 542 0 2246 90 3 30 chr11 10955994 10956294 -137827178 + AluSg SINE Alu 1 292 -18 236 255 53 21 chr11 10956507 10956601 -137826871 + MIR3 SINE MIR 109 205 -3 2366 167 64 52 chr11 10957112 10957626 -137825846 - MLT2B1 LTR ERVL 0 520 1 235 267 171 0 chr11 10959597 10959702 -137823770 + MIR3 SINE MIR 14 136 -72 32 0 0 0 chr11 10959811 10959843 -137823629 + AT_rich Low_complexity Low_complexity 1 32 0 5114 128 16 37 chr11 10960017 10960114 -137823358 + L1MA9 LINE L1 5428 5526 -786 2079 130 0 17 chr11 10960114 10960413 -137823059 - AluSx SINE Alu -18 294 1 5114 128 16 37 chr11 10960413 10960684 -137822788 + L1MA9 LINE L1 5526 5801 -511 7295 123 38 22 chr11 10960684 10961602 -137821870 - Tigger3b DNA MER2_type -1797 1231 288 2376 96 0 6 chr11 10961602 10961915 -137821557 + AluSx SINE Alu 1 311 -1 7295 123 38 22 chr11 10961915 10962208 -137821264 - Tigger3b DNA MER2_type -2740 288 1 186 103 0 0 chr11 10962211 10962240 -137821232 + (CA)n Simple_repeat Simple_repeat 2 30 0 5114 128 16 37 chr11 10962240 10962486 -137820986 + L1MA9 LINE L1 5803 6053 -259 2506 69 3 0 chr11 10962486 10962790 -137820682 - AluSc SINE Alu -4 305 1 5114 128 16 37 chr11 10962790 10963064 -137820408 + L1MA9 LINE L1 6053 6303 -9 802 287 146 21 chr11 10963149 10963739 -137819733 - L1ME4a LINE L1 -6 6115 5447 305 318 26 20 chr11 10963891 10964042 -137819430 - MIR SINE MIR -51 211 60 306 299 37 9 chr11 10964216 10964323 -137819149 + MIR SINE MIR 19 128 -80 617 211 7 35 chr11 10965386 10965528 -137817944 - L2 LINE L2 -3 3310 3173 458 232 138 0 chr11 10965764 10965902 -137817570 - MIR SINE MIR -29 233 77 288 309 62 31 chr11 10966756 10966950 -137816522 - MIR SINE MIR -56 206 7 2335 161 108 68 chr11 10967211 10967756 -137815716 - MLT1F1 LTR MaLR 0 567 1 192 208 21 0 chr11 10969301 10969349 -137814123 + L2 LINE L2 3265 3313 0 496 160 26 0 chr11 10969506 10969663 -137813809 + CT-rich Low_complexity Low_complexity 1 161 0 5917 120 11 6 chr11 10969712 10971482 -137811990 + L1PA14 LINE L1 4411 6161 0 5687 243 156 24 chr11 10971491 10972810 -137810662 - HAL1 LINE L1 -5 2502 1359 2281 58 24 7 chr11 10972810 10973104 -137810368 - AluY SINE Alu -12 299 1 5687 243 156 24 chr11 10973104 10973899 -137809573 - HAL1 LINE L1 -1148 1359 108 389 280 101 32 chr11 10974295 10974484 -137808988 + MIR SINE MIR 5 206 -56 696 229 124 14 chr11 10974503 10974713 -137808759 + MIR SINE MIR 1 233 -29 684 238 99 0 chr11 10974737 10974939 -137808533 + MIR SINE MIR 3 224 -38 272 246 15 23 chr11 10974977 10975107 -137808365 + CT-rich Low_complexity Low_complexity 2 130 0 314 180 0 0 chr11 10975107 10975157 -137808315 - MER66B LTR ERV1 -142 344 295 221 264 0 0 chr11 10976319 10976371 -137807101 + MIR SINE MIR 100 152 -56 321 286 80 9 chr11 10976698 10976810 -137806662 - L2 LINE L2 -39 3233 3114 479 259 62 16 chr11 10976927 10977129 -137806343 + MLT1J LTR MaLR 62 285 -165 287 141 16 0 chr11 10977460 10977524 -137805948 + (TG)n Simple_repeat Simple_repeat 1 65 0 193 361 64 48 chr11 10977533 10977890 -137805582 - L2 LINE L2 -415 2899 2537 592 142 94 9 chr11 10978012 10978149 -137805323 + FLAM_A SINE Alu 4 149 0 791 241 62 18 chr11 10978201 10978425 -137805047 - MIR SINE MIR -21 241 8 272 314 35 12 chr11 10978755 10978841 -137804631 - MIR SINE MIR -162 100 13 222 111 16 32 chr11 10979376 10979439 -137804033 + (TTTTG)n Simple_repeat Simple_repeat 2 63 0 2169 124 15 21 chr11 10979648 10979987 -137803485 + MER1B DNA MER1_type 1 337 0 984 267 65 49 chr11 10980238 10980763 -137802709 + L2 LINE L2 2789 3313 0 367 314 59 8 chr11 10981874 10981992 -137801480 - MIR SINE MIR -133 129 6 1519 190 100 67 chr11 10982251 10982672 -137800800 - LTR41 LTR ERVL -2 771 337 493 175 0 105 chr11 10982748 10982862 -137800610 - LTR41 LTR ERVL -594 179 78 489 162 0 0 chr11 10982880 10982954 -137800518 - AluJ/FLAM SINE Alu -237 75 2 269 148 74 19 chr11 10982998 10983052 -137800420 - LTR41 LTR ERVL -716 57 1 1722 290 87 52 chr11 10983186 10983268 -137800204 - L1MEd LINE L1 -4862 1257 1179 1928 164 7 7 chr11 10983268 10983573 -137799899 - AluSx SINE Alu -7 305 1 1722 290 87 52 chr11 10983573 10983591 -137799881 - L1MEd LINE L1 -4940 1179 1163 2154 101 40 0 chr11 10983591 10983888 -137799584 - AluSp SINE Alu -4 309 1 1722 290 87 52 chr11 10983888 10985108 -137798364 - L1MEd LINE L1 -4956 1163 1 242 289 0 93 chr11 10985194 10985291 -137798181 - MIR3 SINE MIR -116 92 5 1138 223 113 11 chr11 10985389 10985663 -137797809 + AluJo SINE Alu 1 302 0 3676 55 9 0 chr11 10985666 10986123 -137797349 + L1PA7 LINE L1 5693 6153 -1 183 156 0 0 chr11 10986446 10986478 -137796994 + CT-rich Low_complexity Low_complexity 2 33 0 546 286 27 32 chr11 10986902 10987087 -137796385 + MIR SINE MIR 49 232 -30 242 226 0 0 chr11 10987953 10988006 -137795466 - HAL1 LINE L1 -1050 1457 1405 1302 210 5 0 chr11 10988035 10988259 -137795213 - MSTB LTR MaLR 0 426 202 1234 168 36 9 chr11 10988298 10988518 -137794954 - MSTB LTR MaLR -198 228 3 1467 245 33 37 chr11 10988527 10989069 -137794403 - HAL1 LINE L1 -1133 1374 835 689 113 0 75 chr11 10989118 10989222 -137794250 + Charlie5 DNA MER1_type 1 94 -2530 2298 96 0 3 chr11 10989222 10989513 -137793959 + AluSg SINE Alu 1 290 -20 689 113 0 75 chr11 10989513 10989541 -137793931 + Charlie5 DNA MER1_type 94 123 -2501 1598 150 105 3 chr11 10989544 10989897 -137793575 + Charlie5 DNA MER1_type 2236 2624 0 616 286 69 36 chr11 10990003 10990279 -137793193 - HAL1 LINE L1 -2222 285 1 211 361 47 30 chr11 10990398 10990567 -137792905 + L2 LINE L2 2686 2857 -457 242 279 3 0 chr11 10990789 10990864 -137792608 - MIR SINE MIR -62 146 74 385 257 7 73 chr11 10990946 10991082 -137792390 + L2 LINE L2 3137 3263 -9 578 275 79 31 chr11 10992124 10992353 -137791119 + MIR SINE MIR 2 241 -21 759 321 125 15 chr11 10994157 10994630 -137788842 - L3 LINE CR1 -7 1570 1046 221 310 76 33 chr11 10996325 10996509 -137786963 + L3 LINE CR1 1037 1228 -349 305 316 76 6 chr11 10997083 10997241 -137786231 - L2 LINE L2 -256 3057 2889 602 307 117 22 chr11 10997287 10997655 -137785817 + L2 LINE L2 2911 3313 0 264 180 20 0 chr11 10998434 10998484 -137784988 - MLT2F LTR ERVL 0 663 613 232 130 65 32 chr11 10998484 10998607 -137784865 + (TCTA)n Simple_repeat Simple_repeat 1 127 0 1361 286 125 8 chr11 10998629 10999157 -137784315 - MLT2F LTR ERVL -44 619 30 227 240 0 13 chr11 11001708 11001783 -137781689 - L1MCa LINE L1 -4347 2079 2006 225 0 0 0 chr11 11001786 11001811 -137781661 + (CA)n Simple_repeat Simple_repeat 2 26 0 216 0 0 0 chr11 11001810 11001834 -137781638 + (TA)n Simple_repeat Simple_repeat 2 25 0 * 259 293 67 125 chr11 11001986 11002175 -137781297 + L2 LINE L2 2824 3022 -250 1722 146 44 14 chr11 11002175 11002469 -137781003 - AluJo SINE Alu -1 311 9 259 293 67 125 chr11 11002469 11002744 -137780728 + L2 LINE L2 3022 3261 -11 557 274 70 75 chr11 11003514 11003872 -137779600 + L2 LINE L2 2958 3313 0 338 324 84 0 chr11 11004975 11005117 -137778355 + MIR SINE MIR 40 193 -69 278 362 13 34 chr11 11005582 11005731 -137777741 + MER5A DNA MER1_type 44 189 0 203 161 0 0 chr11 11006196 11006227 -137777245 + (CA)n Simple_repeat Simple_repeat 2 32 0 222 200 0 0 chr11 11006277 11006312 -137777160 + L2 LINE L2 3222 3256 -16 334 292 174 0 chr11 11007052 11007196 -137776276 - L3 LINE CR1 -177 1400 1232 1450 209 165 8 chr11 11007198 11007567 -137775905 + MLT1C LTR MaLR 4 430 -37 569 320 221 27 chr11 11007591 11008138 -137775334 - L3 LINE CR1 -357 1220 568 407 298 61 0 chr11 11008140 11008254 -137775218 - L2 LINE L2 0 3272 3152 644 254 26 24 chr11 11009081 11009378 -137774094 + MER93b LTR ERV1 3 353 -20 275 343 71 91 chr11 11009945 11010254 -137773218 + L2 LINE L2 2969 3271 -1 424 232 261 0 chr11 11010277 11010419 -137773053 - MIR SINE MIR -10 252 74 23 68 0 0 chr11 11010495 11010539 -137772933 + AT_rich Low_complexity Low_complexity 1 44 0 1040 232 84 66 chr11 11010641 11011068 -137772404 - LTR37B LTR ERV1 -5 463 29 348 201 96 113 chr11 11011412 11011651 -137771821 - L1MC5 LINE L1 -145 7816 7582 314 349 9 0 chr11 11011661 11011770 -137771702 - L2 LINE L2 -16 3297 3188 706 309 51 0 chr11 11012203 11012420 -137771052 - L3 LINE CR1 -745 832 605 279 0 0 0 chr11 11012503 11012534 -137770938 + (TG)n Simple_repeat Simple_repeat 1 31 0 464 398 36 4 chr11 11012765 11013044 -137770428 - L3 LINE CR1 -1001 576 289 356 300 27 47 chr11 11013494 11013644 -137769828 - MIR3 SINE MIR -23 185 39 264 77 0 0 chr11 11013875 11013914 -137769558 + (CATCC)n Simple_repeat Simple_repeat 5 43 0 859 217 10 44 chr11 11013996 11014077 -137769395 + MER58A DNA MER1_type 29 111 -2309 2918 68 6 0 chr11 11014077 11014429 -137769043 + THE1A LTR MaLR 1 354 -1 859 217 10 44 chr11 11014429 11014550 -137768922 + MER58A DNA MER1_type 111 224 0 2652 105 32 32 chr11 11015553 11015886 -137767586 + LTR23 LTR ERV1 1 336 -101 2095 168 111 137 chr11 11015886 11016632 -137766840 + LTR8A LTR ERV1 1 727 0 2652 105 32 32 chr11 11016632 11016735 -137766737 + LTR23 LTR ERV1 335 437 0 376 232 21 32 chr11 11016743 11016838 -137766634 - MIR SINE MIR 0 262 169 203 138 0 0 chr11 11017310 11017339 -137766133 + (CA)n Simple_repeat Simple_repeat 1 29 0 414 347 16 0 chr11 11017392 11017513 -137765959 - L2 LINE L2 -4 3268 3146 1778 84 0 4 chr11 11017624 11017851 -137765621 + AluY SINE Alu 86 311 0 2246 89 0 25 chr11 11017862 11018177 -137765295 + AluSc SINE Alu 1 307 -2 1339 157 62 7 chr11 11018205 11018479 -137764993 - MER33 DNA MER1_type -27 297 9 394 234 194 34 chr11 11018490 11018786 -137764686 - L2 LINE L2 -207 3065 2736 314 291 68 8 chr11 11019509 11019626 -137763846 + L3 LINE CR1 1312 1435 -142 487 223 66 0 chr11 11020936 11021057 -137762415 - MER103 DNA DNA -17 149 21 610 276 168 0 chr11 11021758 11021954 -137761518 + MIR SINE MIR 33 261 -1 1984 159 51 38 chr11 11021957 11022327 -137761145 - THE1C LTR MaLR 0 375 1 259 296 10 20 chr11 11022556 11022654 -137760818 + MIR SINE MIR 156 252 -10 2489 139 28 14 chr11 11022815 11023174 -137760298 - THE1B LTR MaLR 0 364 1 23 0 0 0 chr11 11023178 11023201 -137760271 + AT_rich Low_complexity Low_complexity 1 23 0 632 246 27 44 chr11 11023777 11023960 -137759512 - MER117 DNA MER1_type 0 197 18 2239 170 88 55 chr11 11024165 11024727 -137758745 - LTR49 LTR ERV1 -15 638 2 14558 154 43 70 chr11 11024735 11027999 -137755473 - LTR49-int LTR ERV1 -3 6328 3154 472 139 139 90 chr11 11028008 11028152 -137755320 - LTR49-int LTR ERV1 -2317 4014 3864 3030 163 27 48 chr11 11028193 11028863 -137754609 - LTR49-int LTR ERV1 -3188 3143 1259 573 157 58 16 chr11 11028863 11028984 -137754488 - LTR49 LTR ERV1 -469 126 1 942 427 19 33 chr11 11029136 11029499 -137753973 + MLT1A2 LTR MaLR 1 358 -16 518 220 60 48 chr11 11029641 11029809 -137753663 + MIR SINE MIR 72 241 -21 184 370 113 35 chr11 11029893 11030096 -137753376 - L2 LINE L2 -236 3036 2818 1986 209 21 24 chr11 11030364 11030785 -137752687 + MER66B LTR ERV1 1 420 -66 24 0 0 0 chr11 11030885 11030909 -137752563 + AT_rich Low_complexity Low_complexity 1 24 0 603 118 0 0 chr11 11030995 11031088 -137752384 + AluSg/x SINE Alu 218 310 0 2376 112 0 0 chr11 11032314 11032626 -137750846 - AluSx SINE Alu 0 312 1 207 0 0 0 chr11 11033821 11033844 -137749628 + (T)n Simple_repeat Simple_repeat 1 23 0 307 73 0 0 chr11 11033894 11033935 -137749537 + L1PBa LINE L1 1741 1781 -5082 551 247 174 26 chr11 11034238 11034623 -137748849 - L1MEc LINE L1 -2884 3331 2890 322 211 33 11 chr11 11034735 11034825 -137748647 + MER66B LTR ERV1 395 486 0 2741 198 19 101 chr11 11034869 11035622 -137747850 + LTR8 LTR ERV1 1 691 0 5321 97 3 20 chr11 11035752 11036455 -137747017 + LTR8 LTR ERV1 1 691 0 586 204 167 19 chr11 11036739 11036901 -137746571 - MER5A DNA MER1_type 0 189 4 5187 161 42 8 chr11 11037715 11038850 -137744622 - L1MB2 LINE L1 -2 6169 4994 703 303 25 29 chr11 11039144 11039388 -137744084 + MIR SINE MIR 19 261 -1 319 230 27 0 chr11 11039408 11039482 -137743990 - MLT1E LTR MaLR 0 593 518 6607 197 29 20 chr11 11039482 11040992 -137742480 + L1M4 LINE L1 3841 5362 -784 485 76 30 0 chr11 11040988 11041054 -137742418 + L1MB8 LINE L1 6070 6137 -41 * 189 0 0 0 chr11 11041075 11041096 -137742376 + (CA)n Simple_repeat Simple_repeat 2 22 0 775 243 123 22 chr11 11041096 11041491 -137741981 - MLT1E LTR MaLR -64 529 1 408 256 48 24 chr11 11041721 11041846 -137741626 - MIR SINE MIR -130 132 5 184 380 14 0 chr11 11041950 11042021 -137741451 - L2 LINE L2 -18 3254 3183 824 251 104 25 chr11 11042064 11042448 -137741024 - L1MEc LINE L1 -3655 2560 2168 1973 142 130 24 chr11 11042448 11042787 -137740685 + THE1C LTR MaLR 1 375 0 824 251 104 25 chr11 11042787 11042876 -137740596 - L1MEc LINE L1 -4047 2168 2087 1729 192 29 35 chr11 11043121 11043465 -137740007 + MER2 DNA MER2_type 2 343 -1 351 235 152 23 chr11 11043471 11043688 -137739784 - L1MEc LINE L1 -5112 1093 849 2543 54 0 0 chr11 11043691 11043989 -137739483 - AluY SINE Alu -13 298 1 322 109 0 0 chr11 11044015 11044061 -137739411 - L1MA9 LINE L1 -38 6274 6229 1848 133 20 51 chr11 11044061 11044415 -137739057 + THE1B LTR MaLR 1 343 -21 327 273 23 53 chr11 11047934 11048066 -137735406 + MER103 DNA DNA 38 165 -1 1047 318 75 20 chr11 11048153 11048797 -137734675 + L2 LINE L2 1835 3232 -40 2768 144 36 0 chr11 11048825 11049242 -137734230 - MSTB1 LTR MaLR 0 432 1 608 180 29 22 chr11 11049480 11049619 -137733853 + LTR41 LTR ERVL 1 140 -633 311 308 0 0 chr11 11049742 11049833 -137733639 + L2 LINE L2 2593 2683 -631 561 307 49 32 chr11 11050088 11050560 -137732912 - L1M4 LINE L1 -1567 4636 4157 3139 223 51 35 chr11 11050575 11051693 -137731779 + L1ME1 LINE L1 4930 6080 -86 210 231 0 0 chr11 11051798 11051863 -137731609 + (TTTA)n Simple_repeat Simple_repeat 1 65 0 339 339 48 32 chr11 11051898 11052022 -137731450 - L2 LINE L2 0 3272 3147 194 167 83 21 chr11 11054908 11054956 -137728516 + MER5B DNA MER1_type 2 52 -126 1303 300 103 25 chr11 11056003 11056797 -137726675 + HAL1b LINE L1 56 911 -437 190 222 0 22 chr11 11057043 11057088 -137726384 + MIR SINE MIR 200 243 -19 1834 141 4 7 chr11 11057090 11057360 -137726112 - AluSx SINE Alu -43 269 1 221 261 6 78 chr11 11057692 11057872 -137725600 + T-rich Low_complexity Low_complexity 2 168 0 769 83 0 0 chr11 11058558 11058654 -137724818 + L1PA3 LINE L1 2 97 -6049 * 32752 40 0 6 chr11 11058653 11059899 -137723573 + L1PA3 LINE L1 600 1851 -4295 8103 27 0 4 chr11 11059899 11061254 -137722218 + L1PA3 LINE L1 4806 6152 -3 32752 40 0 6 chr11 11061254 11063956 -137719516 + L1PA3 LINE L1 1851 4526 -1620 5757 183 50 16 chr11 11064056 11066491 -137716981 - L1PBb LINE L1 -3025 3178 658 308 300 106 33 chr11 11066629 11066809 -137716663 + MIR SINE MIR 68 260 -2 268 256 11 44 chr11 11067030 11067120 -137716352 + MER102b DNA MER1_type 232 318 -23 1101 286 66 40 chr11 11067199 11068113 -137715359 + L1MC4a LINE L1 747 1715 -4595 4879 264 81 46 chr11 11068393 11068990 -137714482 + L1MC4a LINE L1 4499 5074 -2717 2417 52 35 0 chr11 11068990 11069276 -137714196 - AluY SINE Alu -14 297 2 4879 264 81 46 chr11 11069276 11071059 -137712413 + L1MC4a LINE L1 5074 6980 -811 203 88 29 0 chr11 11071059 11071093 -137712379 + (TAGA)n Simple_repeat Simple_repeat 3 37 0 4879 264 81 46 chr11 11071093 11071322 -137712150 + L1MC4a LINE L1 6980 7200 -591 1119 240 78 35 chr11 11071449 11071933 -137711539 + L1MEd LINE L1 2231 2735 -3394 192 200 0 0 chr11 11072878 11072918 -137710554 + (TG)n Simple_repeat Simple_repeat 2 41 0 385 236 236 56 chr11 11073583 11073778 -137709694 - L2 LINE L2 -337 2977 2748 1510 150 4 4 chr11 11073904 11074130 -137709342 - AluSx SINE Alu -86 226 1 377 325 8 16 chr11 11074130 11074256 -137709216 - L2 LINE L2 -249 3023 2899 378 283 33 25 chr11 11075650 11075770 -137707702 + L2 LINE L2 3193 3313 0 1048 239 147 21 chr11 11075815 11076196 -137707276 - LTR33 LTR ERVL -3 518 90 970 177 111 5 chr11 11076331 11076529 -137706943 + MER20 DNA MER1_type 1 219 0 304 276 69 26 chr11 11077154 11077270 -137706202 - MIR SINE MIR -77 185 65 196 222 44 0 chr11 11077515 11077560 -137705912 - L2 LINE L2 -3 3310 3264 540 232 139 0 chr11 11077662 11077813 -137705659 - MIR SINE MIR -12 250 79 1476 167 63 20 chr11 11077827 11078127 -137705345 + L1MB3 LINE L1 5828 6140 -43 2260 80 14 0 chr11 11078130 11078419 -137705053 + AluY SINE Alu 1 293 -18 550 30 0 0 chr11 11078491 11078557 -137704915 - L1PA4 LINE L1 -3 6152 6087 288 258 45 22 chr11 11078618 11078707 -137704765 + L2 LINE L2 3180 3270 -2 287 91 0 0 chr11 11078747 11078791 -137704681 + L1MB4 LINE L1 6136 6179 -1 1992 203 17 17 chr11 11078889 11079303 -137704169 - MLT2D LTR ERVL 0 414 1 2160 110 3 13 chr11 11079889 11080189 -137703283 + AluSx SINE Alu 1 297 -15 284 326 160 22 chr11 11081355 11081536 -137701936 - MIR SINE MIR -23 239 34 314 304 36 9 chr11 11082458 11082570 -137700902 + MIR SINE MIR 26 140 -122 764 187 122 75 chr11 11082894 11082986 -137700486 - MER58A DNA MER1_type -2196 224 138 2267 151 14 38 chr11 11082986 11083356 -137700116 - MLT1A1 LTR MaLR -4 361 1 764 187 122 75 chr11 11083356 11083477 -137699995 - MER58A DNA MER1_type -2282 138 1 381 173 12 12 chr11 11083618 11083699 -137699773 - L1ME3 LINE L1 -215 5947 5867 586 275 20 64 chr11 11083721 11083972 -137699500 - L1ME3 LINE L1 -403 5767 5528 1212 209 63 54 chr11 11083978 11084478 -137698994 - MER34B LTR ERV1 -6 559 5 759 265 34 32 chr11 11084488 11084955 -137698517 - L1ME3 LINE L1 -634 5528 5056 2415 165 17 40 chr11 11085663 11086068 -137697404 - MSTD LTR MaLR 0 396 1 810 249 46 10 chr11 11086714 11086911 -137696561 + MIR SINE MIR 29 232 -30 392 352 57 0 chr11 11087227 11087386 -137696086 + MIR SINE MIR 47 214 -48 954 222 236 33 chr11 11087419 11087784 -137695688 - MLT1E LTR MaLR -154 439 1 401 287 8 25 chr11 11088601 11088723 -137694749 - MIR3 SINE MIR -85 123 4 1609 188 32 0 chr11 11088747 11089029 -137694443 - AluJb SINE Alu -21 291 1 860 281 39 17 chr11 11089636 11089995 -137693477 + LTR16A LTR ERVL 84 450 0 21 36 0 0 chr11 11091854 11091882 -137691590 + AT_rich Low_complexity Low_complexity 1 28 0 32 0 0 0 chr11 11092222 11092254 -137691218 + AT_rich Low_complexity Low_complexity 1 32 0 213 94 0 0 chr11 11092990 11093022 -137690450 + (TG)n Simple_repeat Simple_repeat 1 32 0 2028 163 98 21 chr11 11093355 11093773 -137689699 - MLT1D LTR MaLR 0 505 56 893 188 0 18 chr11 11093773 11093943 -137689529 + LTR28 LTR ERV1 1 167 -853 272 105 0 0 chr11 11093929 11093967 -137689505 + MER61B LTR ERV1 102 139 -286 * 298 203 16 0 chr11 11093980 11094044 -137689428 + LTR1 LTR ERV1 121 185 -600 * 1427 240 21 24 chr11 11094018 11094356 -137689116 + LTR27 LTR ERV1 299 635 -1 11052 171 11 9 chr11 11094543 11097214 -137686258 + L1PB3 LINE L1 3146 5823 -331 2091 125 0 0 chr11 11097214 11097518 -137685954 + AluSc SINE Alu 1 304 0 11052 171 11 9 chr11 11097518 11097849 -137685623 + L1PB3 LINE L1 5823 6152 -2 812 121 14 57 chr11 11099126 11099266 -137684206 + L1MA9 LINE L1 6179 6312 0 3898 132 32 10 chr11 11100152 11100737 -137682735 - MER7C DNA MER2_type 0 602 5 210 71 0 0 chr11 11101213 11101241 -137682231 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 699 204 25 46 chr11 11101340 11101536 -137681936 + LTR33 LTR ERVL 330 521 0 780 189 18 92 chr11 11101875 11102103 -137681369 + L1MD3 LINE L1 7777 7987 -8 711 292 89 57 chr11 11102413 11102852 -137680620 + MLT1L LTR MaLR 2 454 -161 282 73 0 0 chr11 11103893 11103934 -137679538 + (CAT)n Simple_repeat Simple_repeat 1 41 0 201 294 0 0 chr11 11103988 11104039 -137679433 - MIR SINE MIR -32 230 180 193 291 164 9 chr11 11104188 11104298 -137679174 - MIR SINE MIR -75 187 61 609 253 123 113 chr11 11105030 11105559 -137677913 - LTR67 LTR ERVL 0 557 24 739 295 32 14 chr11 11105598 11105883 -137677589 - L1M4 LINE L1 -2169 3977 3688 192 227 45 0 chr11 11106089 11106133 -137677339 - L2 LINE L2 -6 3266 3221 219 69 0 0 chr11 11106380 11106409 -137677063 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 269 240 272 0 chr11 11106614 11106739 -137676733 + MIR SINE MIR 3 161 -101 200 302 32 0 chr11 11106772 11106835 -137676637 - L2 LINE L2 -18 3254 3190 294 279 0 0 chr11 11107525 11107593 -137675879 + MIR SINE MIR 68 135 -73 364 303 53 0 chr11 11108232 11108364 -137675108 - MIR3 SINE MIR -27 181 43 233 365 31 50 chr11 11108879 11109101 -137674371 - L2 LINE L2 -56 3216 2999 512 241 131 76 chr11 11109105 11109342 -137674130 - MIR SINE MIR -1 261 12 671 327 38 44 chr11 11109401 11109924 -137673548 - L2 LINE L2 -411 2903 2384 460 255 167 14 chr11 11110576 11110907 -137672565 + LTR16A LTR ERVL 23 450 0 359 269 67 15 chr11 11110908 11111042 -137672430 + MLT2F LTR ERVL 1 141 -522 1118 171 136 17 chr11 11111101 11111388 -137672084 + MLT2F LTR ERVL 303 623 -40 1406 220 83 40 chr11 11112695 11113156 -137670316 + MLT1D LTR MaLR 21 387 -3 253 366 66 11 chr11 11113372 11113555 -137669917 + MIR SINE MIR 49 241 -21 946 185 21 85 chr11 11113834 11114023 -137669449 - MER45A DNA AcHobo 0 178 2 196 254 30 45 chr11 11114194 11114261 -137669211 - MIR SINE MIR -2 260 195 346 266 18 18 chr11 11114375 11114488 -137668984 - MIR SINE MIR -56 206 94 348 267 118 25 chr11 11114582 11114743 -137668729 - MIR SINE MIR -48 214 39 400 286 202 0 chr11 11115055 11115233 -137668239 + MIR SINE MIR 40 253 -9 353 350 16 0 chr11 11115532 11115655 -137667817 + MIR3 SINE MIR 32 156 -52 2238 115 0 3 chr11 11115658 11115954 -137667518 - AluSg SINE Alu -15 295 1 7995 30 2 0 chr11 11116130 11117609 -137665863 + L1PA4 LINE L1 4672 6152 -3 190 143 0 0 chr11 11118094 11118129 -137665343 + L2 LINE L2 3270 3304 -9 14806 191 26 7 chr11 11118223 11118663 -137664809 - L1P LINE L1 -1291 4855 4425 2040 142 0 16 chr11 11118663 11118980 -137664492 - AluSx SINE Alu 0 312 1 14806 191 26 7 chr11 11118980 11121543 -137661929 - L1P LINE L1 -1721 4425 1795 650 226 14 14 chr11 11121543 11121689 -137661783 - MER58 DNA MER1_type -2274 146 1 1237 145 181 68 chr11 11122623 11122948 -137660524 + THE1B LTR MaLR 1 362 -2 604 232 85 12 chr11 11123329 11123493 -137659979 + MER5B DNA MER1_type 3 178 0 2918 257 64 31 chr11 11124959 11126319 -137657153 - L1ME3A LINE L1 0 6170 4755 1209 209 93 11 chr11 11126342 11126697 -137656775 - L1ME3A LINE L1 -1505 4641 4258 1498 198 112 34 chr11 11126698 11127081 -137656391 - MLT1D LTR MaLR 0 505 93 1597 171 21 21 chr11 11127081 11127367 -137656105 + LTR32 LTR ERVL 15 300 -171 234 259 120 28 chr11 11127371 11127479 -137655993 - L1M4 LINE L1 -1228 4918 4801 497 229 97 21 chr11 11127603 11127747 -137655725 + LTR32 LTR ERVL 317 471 0 267 212 26 142 chr11 11127747 11127857 -137655615 - MLT1D LTR MaLR -408 97 1 232 265 44 0 chr11 11127858 11127926 -137655546 - L1ME3A LINE L1 -1890 4256 4186 309 310 69 48 chr11 11127934 11128079 -137655393 - MIR SINE MIR -113 149 2 369 238 38 29 chr11 11128281 11128386 -137655086 + MIR SINE MIR 40 145 -63 335 236 154 8 chr11 11128680 11128803 -137654669 - L2 LINE L2 -214 3058 2918 269 280 20 30 chr11 11129476 11129576 -137653896 + L3 LINE CR1 1277 1375 -202 336 164 66 0 chr11 11130781 11130842 -137652630 - L2 LINE L2 -12 3301 3237 * 521 347 16 5 chr11 11130830 11131020 -137652452 + L3 LINE CR1 1379 1570 -7 208 305 12 49 chr11 11131146 11131228 -137652244 - MIR SINE MIR -93 115 37 692 228 175 16 chr11 11131379 11131625 -137651847 + MER45C DNA AcHobo 1 285 -668 465 303 88 44 chr11 11131774 11132048 -137651424 + MER45C DNA AcHobo 487 772 -181 1733 162 62 3 chr11 11132179 11132487 -137650985 + MER45B DNA AcHobo 715 1040 0 454 217 17 35 chr11 11233627 11233742 -137549730 - L1ME2 LINE L1 0 6164 6052 243 281 0 0 chr11 11234240 11234304 -137549168 - MLT1D LTR MaLR -438 67 4 2297 83 0 22 chr11 11234452 11234764 -137548708 + AluSg SINE Alu 1 305 -5 352 315 94 10 chr11 11234878 11235081 -137548391 + MIR SINE MIR 41 260 -2 519 266 189 0 chr11 11235398 11235567 -137547905 + MIR SINE MIR 6 206 -56 1379 179 0 5 chr11 11238921 11239145 -137544327 + MLT1A1 LTR MaLR 143 365 0 240 233 0 0 chr11 11239145 11239188 -137544284 + Charlie8 DNA MER1_type 218 260 -2157 932 214 64 30 chr11 11239257 11239702 -137543770 - MLT1F1 LTR MaLR 0 567 1 239 276 0 26 chr11 11239705 11239781 -137543691 + MIR SINE MIR 183 256 -6 548 286 87 12 chr11 11239788 11240029 -137543443 - MIR SINE MIR -2 260 2 1307 193 78 43 chr11 11240284 11240606 -137542866 - MLT1A1 LTR MaLR -12 353 21 191 304 29 53 chr11 11240638 11240809 -137542663 + L2 LINE L2 2814 2980 -292 545 124 21 21 chr11 11241679 11241776 -137541696 + MER103 DNA DNA 25 121 -45 465 306 23 23 chr11 11242352 11242525 -137540947 - MIR SINE MIR -31 231 59 219 69 0 0 chr11 11242542 11242571 -137540901 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 3531 59 9 0 chr11 11243068 11243511 -137539961 - L1PA8 LINE L1 -19 6153 5707 224 222 100 33 chr11 11243688 11243778 -137539694 + L2 LINE L2 3168 3263 -9 377 255 20 31 chr11 11245677 11245775 -137537697 + MIR SINE MIR 36 132 -76 203 341 24 0 chr11 11245978 11246060 -137537412 - L2 LINE L2 -6 3307 3224 645 231 75 0 chr11 11246227 11246413 -137537059 - L1ME3A LINE L1 -7 6163 5964 1671 241 59 16 chr11 11247393 11247887 -137535585 + HAL1 LINE L1 1420 1934 -573 1234 226 81 59 chr11 11247994 11248499 -137534973 + LTR33A LTR ERVL 2 517 -6 446 269 102 44 chr11 11248504 11248779 -137534693 + HAL1 LINE L1 2079 2369 -138 563 268 162 0 chr11 11248884 11249063 -137534409 + MIR SINE MIR 34 241 -21 369 264 64 9 chr11 11249390 11249500 -137533972 - MIR SINE MIR -128 134 19 261 325 0 0 chr11 11250004 11250081 -137533391 - L2 LINE L2 -339 2974 2898 242 366 15 15 chr11 11251079 11251213 -137532259 + MIR SINE MIR 20 153 -109 722 257 31 62 chr11 11251227 11251453 -137532019 + MIR SINE MIR 40 258 -4 184 233 0 0 chr11 11251498 11251541 -137531931 + L2 LINE L2 3271 3313 0 729 217 32 6 chr11 11251691 11251848 -137531624 - MER63 DNA MER1_type -272 789 629 184 203 106 114 chr11 11252525 11252648 -137530824 - MER5B DNA MER1_type -56 122 1 552 196 101 34 chr11 11253299 11253447 -137530025 + MER5A DNA MER1_type 13 170 -19 609 306 107 10 chr11 11253473 11253679 -137529793 + MIR SINE MIR 5 230 -32 864 265 60 36 chr11 11253883 11254136 -137529336 - LTR16C LTR ERVL 0 491 227 2339 177 64 11 chr11 11254136 11254576 -137528896 - MLT1C LTR MaLR 0 467 5 864 265 60 36 chr11 11254576 11254658 -137528814 - LTR16C LTR ERVL -264 227 148 2680 127 16 45 chr11 11254665 11254723 -137528749 + MSTB1 LTR MaLR 1 59 -373 2564 61 0 0 chr11 11254723 11255019 -137528453 + AluY SINE Alu 1 296 -15 2680 127 16 45 chr11 11255019 11255401 -137528071 + MSTB1 LTR MaLR 59 428 -4 1421 153 39 49 chr11 11255473 11255716 -137527756 - MLT1A1 LTR MaLR 0 365 124 903 224 124 59 chr11 11255716 11256055 -137527417 + MLT1A1 LTR MaLR 1 361 -4 1421 153 39 49 chr11 11256055 11256119 -137527353 - MLT1A1 LTR MaLR -241 124 61 204 245 0 0 chr11 11256365 11256414 -137527058 + A-rich Low_complexity Low_complexity 1 49 0 199 345 12 12 chr11 11258246 11258330 -137525142 - MIR SINE MIR -133 129 46 986 336 117 26 chr11 11258721 11259364 -137524108 - L3 LINE CR1 -22 1555 855 823 263 96 82 chr11 11259630 11260233 -137523239 + L2 LINE L2 2536 3152 -161 486 0 0 0 chr11 11260233 11260287 -137523185 + (CA)n Simple_repeat Simple_repeat 2 55 0 823 263 96 82 chr11 11260287 11260452 -137523020 + L2 LINE L2 3152 3313 0 212 210 0 16 chr11 11260645 11260707 -137522765 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 29 0 0 0 chr11 11260866 11260895 -137522577 + AT_rich Low_complexity Low_complexity 1 29 0 2149 131 3 3 chr11 11261442 11261747 -137521725 + AluSx SINE Alu 1 305 -7 487 291 35 8 chr11 11263220 11263377 -137520095 + MIR SINE MIR 32 194 -65 535 189 11 105 chr11 11263399 11263589 -137519883 + MER20 DNA MER1_type 47 218 -1 251 320 90 0 chr11 11266619 11266719 -137516753 - L2 LINE L2 -4 3268 3160 227 172 299 11 chr11 11266733 11266820 -137516652 - MER81 DNA DNA -2 112 1 386 338 36 0 chr11 11266924 11267063 -137516409 - MIR3 SINE MIR -30 178 35 534 200 44 37 chr11 11267540 11267675 -137515797 - L2 LINE L2 -5 3308 3173 725 285 91 30 chr11 11268562 11268860 -137514612 + L2 LINE L2 2986 3301 -12 251 408 8 0 chr11 11269696 11269821 -137513651 + MIR SINE MIR 20 145 -63 204 328 0 0 chr11 11270112 11270173 -137513299 - L2 LINE L2 -2 3270 3210 267 214 0 0 chr11 11270990 11271060 -137512412 + (TGG)n Simple_repeat Simple_repeat 3 72 0 238 348 144 0 chr11 11271849 11271967 -137511505 + L2 LINE L2 3138 3272 0 1484 94 29 1 chr11 11272411 11272766 -137510706 - L1P4 LINE L1 -685 5481 5115 417 240 13 87 chr11 11272876 11273026 -137510446 + MIR3 SINE MIR 32 170 -38 260 292 46 31 chr11 11273047 11273177 -137510295 + MLT1J2 LTR MaLR 47 178 -231 2090 169 91 5 chr11 11273212 11273632 -137509840 + MLT1C LTR MaLR 6 461 -6 1329 232 16 27 chr11 11273738 11274104 -137509368 + LTR37B LTR ERV1 6 367 -101 384 151 161 0 chr11 11274388 11274481 -137508991 + MLT1C LTR MaLR 152 259 -208 224 382 34 0 chr11 11274513 11274602 -137508870 - L3 LINE CR1 -3 1574 1483 245 315 74 19 chr11 11274710 11274818 -137508654 - L3 LINE CR1 -321 1256 1143 673 191 85 163 chr11 11274824 11275107 -137508365 - MIR SINE MIR 0 262 2 278 269 0 0 chr11 11275254 11275306 -137508166 + MER91 DNA MER1_type 87 138 -2 458 279 125 5 chr11 11276161 11276369 -137507103 + L1ME3 LINE L1 5927 6159 -3 2296 112 0 7 chr11 11276539 11276842 -137506630 - AluSx SINE Alu -11 301 1 811 253 51 39 chr11 11277008 11277265 -137506207 - MIR SINE MIR -2 260 1 992 212 5 0 chr11 11277453 11277678 -137505794 + L1ME3A LINE L1 5356 5589 -567 1357 209 66 50 chr11 11277679 11278043 -137505429 - MLT1A2 LTR MaLR -4 370 1 2040 211 31 20 chr11 11278043 11278527 -137504945 - MLT-int LTR MaLR 0 1735 1140 359 169 45 22 chr11 11278512 11278601 -137504871 - MLT-int LTR MaLR -966 769 679 * 531 242 43 30 chr11 11278665 11278893 -137504579 - MLT1-int LTR MaLR -489 882 561 1153 196 29 57 chr11 11278893 11279174 -137504298 + MLT1A2 LTR MaLR 98 370 -4 1212 250 7 0 chr11 11279178 11279470 -137504002 + L1ME3A LINE L1 5582 5875 -295 * 1760 89 30 11 chr11 11279467 11279820 -137503652 - L1PB2 LINE L1 -619 5532 5169 4668 76 2 22 chr11 11279821 11280463 -137503009 + L1PB2 LINE L1 5521 6149 -2 23 0 0 0 chr11 11280463 11280486 -137502986 + AT_rich Low_complexity Low_complexity 1 23 0 228 299 13 0 chr11 11280486 11280563 -137502909 + L1ME3A LINE L1 5877 5954 -210 317 242 33 0 chr11 11280575 11280666 -137502806 + L1ME3A LINE L1 6077 6170 0 2533 73 0 0 chr11 11280979 11281280 -137502192 - AluY SINE Alu -10 301 1 957 215 5 20 chr11 11284293 11284493 -137498979 - MIR SINE MIR -64 198 2 207 173 0 0 chr11 11285961 11286013 -137497459 + (TG)n Simple_repeat Simple_repeat 1 52 0 340 307 102 15 chr11 11286507 11286595 -137496877 - MIR3 SINE MIR -6 202 96 2093 118 0 50 chr11 11286595 11286918 -137496554 + AluSx SINE Alu 1 307 -5 340 307 102 15 chr11 11286918 11286966 -137496506 - MIR3 SINE MIR -112 96 54 720 230 18 6 chr11 11286986 11287151 -137496321 + MER5A DNA MER1_type 5 171 -18 394 148 12 49 chr11 11288244 11288325 -137495147 - MSTB2 LTR MaLR 0 457 351 2071 193 33 51 chr11 11288919 11289433 -137494039 + MLT1D LTR MaLR 1 505 0 727 265 73 32 chr11 11290050 11290269 -137493203 + MIR SINE MIR 35 262 0 329 304 82 15 chr11 11290305 11290440 -137493032 - MIR SINE MIR -6 256 113 255 338 136 43 chr11 11290471 11290773 -137492699 + L2 LINE L2 2943 3272 0 245 212 12 82 chr11 11290954 11291039 -137492433 - MIR SINE MIR -152 110 32 394 290 131 15 chr11 11293044 11293200 -137490272 - MIR SINE MIR -61 147 3 584 245 52 62 chr11 11294391 11294583 -137488889 - MIR SINE MIR -56 206 17 2425 79 0 3 chr11 11295285 11295588 -137487884 + AluY SINE Alu 1 302 -9 243 296 56 24 chr11 11295796 11295921 -137487551 + L2 LINE L2 3143 3271 -1 297 328 156 46 chr11 11297071 11297373 -137486099 - L2 LINE L2 -25 3247 2913 2164 124 0 13 chr11 11297617 11297931 -137485541 - AluSg SINE Alu 0 310 1 410 316 128 5 chr11 11298258 11298454 -137485018 - MIR SINE MIR -10 252 33 235 259 276 0 chr11 11299656 11299772 -137483700 - MIR SINE MIR -18 244 97 812 352 54 31 chr11 11300409 11300986 -137482486 + L2 LINE L2 2247 2836 -478 241 320 67 52 chr11 11303846 11304040 -137479432 - MIR SINE MIR -18 244 48 1473 256 60 14 chr11 11304412 11304858 -137478614 + MLT1C LTR MaLR 1 467 0 873 278 40 86 chr11 11305193 11306080 -137477392 + L1MEd LINE L1 660 1545 -4765 311 253 11 11 chr11 11307854 11307949 -137475523 - LTR67 LTR ERVL -5 552 458 5453 76 10 0 chr11 11308407 11309116 -137474356 + L1PA8A LINE L1 5416 6131 0 3793 214 73 66 chr11 11309163 11310445 -137473027 - L1MC5 LINE L1 -60 7901 6591 186 43 0 0 chr11 11310445 11310468 -137473004 + (TTA)n Simple_repeat Simple_repeat 3 25 0 3793 214 73 66 chr11 11310468 11310786 -137472686 - L1MC5 LINE L1 -1370 6591 6277 25 75 0 0 chr11 11310843 11310896 -137472576 + AT_rich Low_complexity Low_complexity 1 53 0 1932 268 83 26 chr11 11311054 11311752 -137471720 - L1MC5 LINE L1 -747 5399 5154 189 0 0 0 chr11 11311752 11311773 -137471699 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1932 268 83 26 chr11 11311773 11312215 -137471257 - L1MC5 LINE L1 -992 5154 4738 285 316 158 5 chr11 11312402 11312592 -137470880 + L3 LINE CR1 1244 1462 -115 1004 260 13 13 chr11 11312641 11312876 -137470596 - MIR SINE MIR -2 260 26 194 292 0 0 chr11 11312906 11312954 -137470518 + L3 LINE CR1 433 480 -1097 187 273 0 0 chr11 11313025 11313069 -137470403 - L2 LINE L2 -90 3182 3139 215 315 11 11 chr11 11313820 11313909 -137469563 - L2 LINE L2 -188 3084 2996 290 350 139 0 chr11 11314159 11314339 -137469133 - MIR SINE MIR -57 205 1 351 44 0 0 chr11 11315265 11315310 -137468162 + (TG)n Simple_repeat Simple_repeat 2 46 0 606 163 31 148 chr11 11316194 11316390 -137467082 + MER5B DNA MER1_type 6 178 0 356 232 0 80 chr11 11316400 11316512 -137466960 - MER5A DNA MER1_type -1 188 86 188 310 85 85 chr11 11317986 11318244 -137465228 + L2 LINE L2 3006 3263 -9 224 297 249 12 chr11 11319685 11319850 -137463622 + L2 LINE L2 3068 3271 -1 203 333 0 0 chr11 11320228 11320300 -137463172 - MIR SINE MIR -133 129 58 318 336 32 8 chr11 11321235 11321360 -137462112 - MIR SINE MIR -28 234 107 1000 181 0 0 chr11 11321382 11321548 -137461924 + FRAM SINE Alu 1 166 0 2030 134 3 0 chr11 11322319 11322624 -137460848 + AluSx SINE Alu 1 306 -6 576 341 182 0 chr11 11322710 11323190 -137460282 - L2 LINE L2 -225 3088 2508 722 208 104 20 chr11 11323765 11323967 -137459505 + MIR SINE MIR 7 225 -37 630 290 86 14 chr11 11324128 11324349 -137459123 + MIR SINE MIR 20 256 -6 1881 117 7 23 chr11 11324585 11324884 -137458588 + AluSq SINE Alu 1 294 -19 315 229 43 43 chr11 11326846 11326938 -137456534 + MIR SINE MIR 112 232 -30 278 306 54 108 chr11 11327938 11328419 -137455053 + L2 LINE L2 2818 3272 0 213 132 0 0 chr11 11328912 11328950 -137454522 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 195 328 16 0 chr11 11329461 11329525 -137453947 + MIR SINE MIR 79 143 -65 27 0 0 0 chr11 11329537 11329564 -137453908 + AT_rich Low_complexity Low_complexity 1 27 0 2072 96 3 0 chr11 11329716 11329998 -137453474 - AluSp SINE Alu -10 303 21 306 229 209 9 chr11 11330126 11330231 -137453241 - L2 LINE L2 0 3272 3147 603 275 68 25 chr11 11330440 11330676 -137452796 + LTR16C LTR ERVL 2 247 -244 190 275 0 72 chr11 11330678 11330747 -137452725 + MIR SINE MIR 117 180 -82 486 206 22 37 chr11 11330998 11331131 -137452341 - L2 LINE L2 -383 2931 2801 781 178 25 18 chr11 11331131 11331294 -137452178 + MER5B DNA MER1_type 3 166 -12 1002 259 64 0 chr11 11331307 11331573 -137451899 - L2 LINE L2 -508 2806 2524 307 247 71 11 chr11 11331979 11332080 -137451392 - MIR SINE MIR -73 135 44 733 252 80 25 chr11 11332762 11333000 -137450472 - MIR SINE MIR -10 252 2 263 292 0 28 chr11 11333653 11333725 -137449747 - L2 LINE L2 0 3272 3203 462 125 0 0 chr11 11334132 11334196 -137449276 + MLT1D LTR MaLR 4 67 -438 508 200 17 35 chr11 11334694 11334809 -137448663 + L1ME2 LINE L1 6052 6164 0 1662 234 52 41 chr11 11335714 11336198 -137447274 + MLT1D LTR MaLR 4 492 -13 728 212 14 20 chr11 11336231 11336377 -137447095 + MER45A DNA AcHobo 34 178 0 527 300 48 36 chr11 11336480 11336712 -137446760 - MIR SINE MIR -23 239 3 555 347 63 0 chr11 11336845 11337084 -137446388 + L3 LINE CR1 826 1079 -498 487 294 206 0 chr11 11337177 11337391 -137446081 + MIR SINE MIR 5 262 0 245 298 48 0 chr11 11337396 11337480 -137445992 + L3 LINE CR1 1197 1284 -293 356 353 43 0 chr11 11338475 11338591 -137444881 - L2 LINE L2 -18 3254 3134 342 263 21 81 chr11 11339574 11339760 -137443712 + MIR SINE MIR 88 262 0 188 355 16 16 chr11 11340471 11340533 -137442939 - L3 LINE CR1 -1304 273 212 330 153 0 0 chr11 11341047 11341106 -137442366 + CT-rich Low_complexity Low_complexity 4 62 0 1239 246 107 41 chr11 11342143 11342603 -137440869 - LTR16C LTR ERVL -1 490 1 283 234 26 13 chr11 11342642 11342719 -137440753 + L2 LINE L2 3203 3280 -33 218 322 66 66 chr11 11342734 11342917 -137440555 + L2 LINE L2 3004 3186 -86 549 252 155 7 chr11 11343690 11343845 -137439627 + MER5A DNA MER1_type 6 183 -6 337 284 155 21 chr11 11343929 11344168 -137439304 + L2 LINE L2 2843 3113 -159 399 270 97 65 chr11 11344845 11345030 -137438442 - MIR SINE MIR -21 241 51 2232 94 3 3 chr11 11345136 11345443 -137438029 + AluSp SINE Alu 1 307 -6 240 224 0 92 chr11 11345782 11345858 -137437614 + MIR SINE MIR 57 125 -83 1736 162 109 6 chr11 11345996 11346317 -137437155 - MER21B LTR ERV1 -107 756 403 320 193 18 0 chr11 11346329 11346386 -137437086 - MER21B LTR ERV1 -805 58 1 1324 117 5 15 chr11 11348042 11348247 -137435225 + L1PB1 LINE L1 5948 6150 -1 24 32 0 0 chr11 11348249 11348280 -137435192 + AT_rich Low_complexity Low_complexity 1 31 0 353 298 232 15 chr11 11348796 11348932 -137434540 + MIR SINE MIR 14 119 -143 1760 201 100 21 chr11 11348932 11349400 -137434072 - MLT1D LTR MaLR 0 505 1 353 298 232 15 chr11 11349400 11349461 -137434011 + MIR SINE MIR 119 254 -8 287 351 27 0 chr11 11349941 11350052 -137433420 - MIR SINE MIR -3 259 146 358 267 103 0 chr11 11350395 11350511 -137432961 + MIR SINE MIR 17 144 -64 870 220 42 35 chr11 11350521 11350780 -137432692 - MIR SINE MIR 0 262 2 1412 191 62 74 chr11 11350794 11351028 -137432444 + MSTD LTR MaLR 1 236 -160 261 0 0 0 chr11 11351028 11351057 -137432415 + (TC)n Simple_repeat Simple_repeat 2 30 0 270 0 0 0 chr11 11351058 11351088 -137432384 + (CA)n Simple_repeat Simple_repeat 2 31 0 1412 191 62 74 chr11 11351088 11351187 -137432285 + MSTD LTR MaLR 235 332 -64 340 373 19 28 chr11 11351287 11351499 -137431973 - L2 LINE L2 -198 3074 2865 617 324 105 30 chr11 11352558 11352919 -137430553 - L3 LINE CR1 -25 1552 1165 180 262 24 0 chr11 11355552 11355594 -137427878 - MIR SINE MIR 0 262 220 2080 117 13 10 chr11 11357460 11357759 -137425713 + AluSx SINE Alu 1 300 -12 445 265 29 18 chr11 11359564 11359734 -137423738 + LTR33 LTR ERVL 341 512 -9 1683 159 11 8 chr11 11360399 11360663 -137422809 + AluJo SINE Alu 1 265 -47 250 226 16 0 chr11 11360881 11360943 -137422529 - MER81 DNA DNA 0 114 52 895 253 60 65 chr11 11361034 11361480 -137421992 - LTR16A1 LTR ERVL -13 444 1 1301 246 72 3 chr11 11362215 11362549 -137420923 + LTR16C LTR ERVL 122 478 -13 1454 293 110 27 chr11 11363223 11364137 -137419335 + L2 LINE L2 2278 3282 -31 2240 213 72 40 chr11 11364137 11364738 -137418734 - MLT1E3 LTR MaLR 0 624 5 1454 293 110 27 chr11 11364738 11364773 -137418699 + L2 LINE L2 3282 3313 0 283 345 55 0 chr11 11364924 11365034 -137418438 + MIR SINE MIR 30 145 -63 189 121 0 0 chr11 11365101 11365134 -137418338 + (TCCA)n Simple_repeat Simple_repeat 3 35 0 610 258 67 53 chr11 11367111 11367320 -137416152 + MIR SINE MIR 3 214 -48 305 271 262 8 chr11 11367639 11367761 -137415711 + MIR SINE MIR 97 249 -13 427 312 58 98 chr11 11367843 11368138 -137415334 + L2 LINE L2 2990 3272 0 * 457 279 87 12 chr11 11368126 11368287 -137415185 + MIR3 SINE MIR 7 179 -29 2441 108 0 0 chr11 11368683 11368989 -137414483 + AluSx SINE Alu 1 306 -6 198 236 236 0 chr11 11369277 11369366 -137414106 + L2 LINE L2 3204 3313 0 323 268 106 78 chr11 11371183 11371325 -137412147 - MER91A DNA MER1_type -16 180 35 203 184 0 0 chr11 11371969 11372007 -137411465 + T-rich Low_complexity Low_complexity 1 38 0 194 143 20 0 chr11 11372465 11372514 -137410958 + (CA)n Simple_repeat Simple_repeat 1 50 0 283 307 37 31 chr11 11372521 11372747 -137410725 + (CATG)n Simple_repeat Simple_repeat 1 227 0 425 244 224 50 chr11 11373111 11373312 -137410160 + MIR SINE MIR 12 247 -15 411 268 23 90 chr11 11373704 11373876 -137409596 + MIR SINE MIR 7 165 -48 188 326 61 20 chr11 11373893 11373991 -137409481 - L2 LINE L2 0 3272 3171 227 240 52 31 chr11 11374367 11374463 -137409009 + MIR SINE MIR 34 131 -77 203 200 0 0 chr11 11375084 11375119 -137408353 - L2 LINE L2 -17 3255 3221 191 272 148 0 chr11 11375788 11375869 -137407603 - MER5A DNA MER1_type 0 189 97 * 274 253 40 0 chr11 11375801 11375876 -137407596 + MER5A DNA MER1_type 34 111 -78 * 1023 252 40 89 chr11 11375871 11376299 -137407173 - L2 LINE L2 0 3313 2907 24 32 0 0 chr11 11376306 11376337 -137407135 + AT_rich Low_complexity Low_complexity 1 31 0 839 136 0 0 chr11 11376337 11376455 -137407017 - FLAM_C SINE Alu -15 118 1 483 251 90 6 chr11 11376917 11377084 -137406388 - MIR SINE MIR -62 200 20 311 282 48 40 chr11 11378003 11378127 -137405345 - MER5B DNA MER1_type -51 127 3 466 214 13 82 chr11 11378168 11378327 -137405145 - MER112 DNA MER1_type -82 178 31 286 301 55 68 chr11 11378989 11379135 -137404337 - MIR SINE MIR -110 152 9 1800 167 33 3 chr11 11379231 11379530 -137403942 + AluJo SINE Alu 1 308 -4 198 349 0 16 chr11 11379531 11379594 -137403878 + MER5B DNA MER1_type 44 105 -73 930 241 76 17 chr11 11379604 11379895 -137403577 - L1MD2 LINE L1 0 6359 6052 192 306 108 45 chr11 11379976 11380244 -137403228 + L2 LINE L2 2386 2670 -644 441 127 25 0 chr11 11381281 11381360 -137402112 + L1MB7 LINE L1 6103 6183 -1 1775 168 35 0 chr11 11383588 11383874 -137399598 - AluJb SINE Alu -14 298 3 211 349 96 64 chr11 11384268 11384517 -137398955 + L2 LINE L2 3014 3270 -2 209 191 24 0 chr11 11385192 11385234 -137398238 + CT-rich Low_complexity Low_complexity 4 46 0 633 269 282 4 chr11 11385624 11385777 -137397695 - L2 LINE L2 0 3313 3204 2647 110 6 3 chr11 11385777 11386140 -137397332 - THE1B LTR MaLR 0 364 1 633 269 282 4 chr11 11386140 11386448 -137397024 - L2 LINE L2 -109 3204 2703 874 219 85 18 chr11 11387250 11387474 -137395998 - MIR SINE MIR -9 253 15 756 199 139 35 chr11 11387581 11387782 -137395690 - MER58A DNA MER1_type -2 222 1 196 324 130 28 chr11 11387792 11387900 -137395572 + MIR SINE MIR 20 138 -124 238 288 54 9 chr11 11387934 11388045 -137395427 - L2 LINE L2 -15 3298 3183 843 239 73 28 chr11 11388743 11388990 -137394482 + MIR SINE MIR 4 261 -1 523 322 29 37 chr11 11389759 11390004 -137393468 - MIR SINE MIR -1 261 19 231 262 79 56 chr11 11390996 11391122 -137392350 + MIR3 SINE MIR 5 133 -75 724 209 34 75 chr11 11391762 11391805 -137391667 - L2 LINE L2 -19 3294 3251 2432 91 50 19 chr11 11391805 11392169 -137391303 + THE1C LTR MaLR 1 375 0 724 209 34 75 chr11 11392169 11392364 -137391108 - L2 LINE L2 -62 3251 3066 490 297 34 0 chr11 11393229 11393347 -137390125 - L2 LINE L2 -3 3310 3189 * 562 230 38 61 chr11 11393337 11393539 -137389933 - MIR SINE MIR -44 218 23 408 156 0 21 chr11 11394523 11394619 -137388853 + L1MC4 LINE L1 7689 7782 -260 28 29 0 0 chr11 11395537 11395572 -137387900 + AT_rich Low_complexity Low_complexity 1 35 0 567 214 34 0 chr11 11395572 11395689 -137387783 + MER94 DNA DNA 14 134 0 410 162 40 50 chr11 11395711 11395810 -137387662 - MLT1A2 LTR MaLR -274 100 3 429 242 17 33 chr11 11395834 11395954 -137387518 + L2 LINE L2 3195 3312 -1 * 1076 285 71 18 chr11 11395950 11396403 -137387069 - L2 LINE L2 -576 2738 2262 690 336 8 8 chr11 11396486 11396739 -137386733 - MIR SINE MIR 0 262 10 212 278 167 0 chr11 11396806 11396878 -137386594 + MIR3 SINE MIR 112 195 -13 270 267 82 52 chr11 11400233 11400368 -137383104 - MLT1J2 LTR MaLR -90 360 222 915 266 136 57 chr11 11401506 11402190 -137381282 + L1ME3A LINE L1 5324 6066 -104 2520 88 0 0 chr11 11402722 11403030 -137380442 - AluSq SINE Alu -5 308 1 491 297 7 7 chr11 11403598 11403753 -137379719 - MER117 DNA MER1_type -42 155 1 333 271 0 12 chr11 11403911 11403996 -137379476 - MIR3 SINE MIR -7 201 118 190 222 44 0 chr11 11404211 11404256 -137379216 - MIR SINE MIR -166 96 50 463 291 233 18 chr11 11404800 11405143 -137378329 - L2 LINE L2 0 3313 2897 26 30 0 0 chr11 11406116 11406149 -137377323 + AT_rich Low_complexity Low_complexity 1 33 0 334 260 57 37 chr11 11406415 11406554 -137376918 - MIR SINE MIR -58 150 7 418 305 42 37 chr11 11407009 11407199 -137376273 - L2 LINE L2 -585 2729 2539 277 259 71 80 chr11 11407705 11407739 -137375733 + MIR SINE MIR 75 108 -154 2068 127 0 40 chr11 11407739 11408063 -137375409 - AluJb SINE Alu 0 312 2 277 259 71 80 chr11 11408063 11408140 -137375332 + MIR SINE MIR 108 185 -77 860 263 46 39 chr11 11408157 11408416 -137375056 - MIR SINE MIR 0 262 2 254 241 0 35 chr11 11408419 11408477 -137374995 + L2 LINE L2 3205 3260 -12 247 293 106 123 chr11 11408905 11409165 -137374307 - L2 LINE L2 0 3272 3020 917 124 0 0 chr11 11409165 11409286 -137374186 - FLAM_C SINE Alu -12 121 1 247 293 106 123 chr11 11409286 11409449 -137374023 - L2 LINE L2 -252 3020 2856 262 264 55 0 chr11 11410537 11410628 -137372844 + MIR3 SINE MIR 110 205 -3 927 300 171 19 chr11 11412058 11412857 -137370615 + L2 LINE L2 1829 2749 -565 2345 95 7 13 chr11 11412858 11413164 -137370308 + AluSx SINE Alu 1 304 -8 215 288 64 116 chr11 11413263 11413513 -137369959 + L2 LINE L2 2819 3055 -217 190 268 0 0 chr11 11413609 11413650 -137369822 + MER5B DNA MER1_type 1 41 -137 * 266 203 51 63 chr11 11413646 11413725 -137369747 - MER5B DNA MER1_type -64 114 37 230 336 78 78 chr11 11413740 11413868 -137369604 + L2 LINE L2 3145 3272 0 300 255 156 50 chr11 11413905 11414046 -137369426 + MER5A DNA MER1_type 2 157 -32 * 340 256 146 36 chr11 11413939 11414076 -137369396 - MER5B DNA MER1_type -24 154 3 236 298 92 50 chr11 11414265 11414406 -137369066 + L2 LINE L2 3124 3270 -2 408 239 84 52 chr11 11414518 11414673 -137368799 + MIR SINE MIR 102 261 -1 774 213 120 0 chr11 11415118 11415301 -137368171 - MLT1D LTR MaLR 0 505 301 7047 49 3 4 chr11 11515309 11516803 -137266669 - L1PA6 LINE L1 -166 5988 4495 230 352 111 28 chr11 11516819 11516927 -137266545 + L2 LINE L2 3145 3261 -11 344 167 14 14 chr11 11517480 11517552 -137265920 + MLT1C LTR MaLR 269 340 -127 29 28 0 0 chr11 11517676 11517712 -137265760 + AT_rich Low_complexity Low_complexity 1 36 0 2231 160 34 3 chr11 11517712 11518069 -137265403 + MLT1C LTR MaLR 100 467 0 849 270 38 5 chr11 11518358 11518569 -137264903 - MIR SINE MIR -14 248 31 193 324 169 7 chr11 11518684 11518820 -137264652 + L2 LINE L2 2232 2389 -925 1771 73 5 0 chr11 11519447 11519667 -137263805 - L1PA5 LINE L1 0 6154 5934 576 300 58 61 chr11 11519997 11520106 -137263366 + L2 LINE L2 2516 2624 -690 1005 216 0 0 chr11 11520106 11520273 -137263199 + FAM SINE Alu 1 167 -8 576 300 58 61 chr11 11520273 11520493 -137262979 + L2 LINE L2 2624 2844 -470 1659 173 3 18 chr11 11520505 11520789 -137262683 - AluJb SINE Alu -20 292 13 233 259 0 0 chr11 11520791 11520849 -137262623 + L2 LINE L2 2912 2969 -303 1466 195 62 0 chr11 11520914 11521186 -137262286 - AluJo SINE Alu -23 289 1 381 22 0 0 chr11 11521595 11521641 -137261831 + (CA)n Simple_repeat Simple_repeat 2 47 0 4291 191 43 69 chr11 11522585 11524133 -137259339 - L1MD3 LINE L1 -743 5403 4442 378 0 0 0 chr11 11524133 11524175 -137259297 + (TA)n Simple_repeat Simple_repeat 2 43 0 4291 191 43 69 chr11 11524175 11524278 -137259194 - L1MD3 LINE L1 -1704 4442 4338 637 231 14 0 chr11 11524273 11524420 -137259052 + L1MD3 LINE L1 7842 7990 -5 * 355 227 182 9 chr11 11524637 11524747 -137258725 + MIR SINE MIR 29 157 -105 581 277 36 36 chr11 11524876 11525042 -137258430 + MIR SINE MIR 13 178 -84 1911 124 10 27 chr11 11525100 11525398 -137258074 + AluSq SINE Alu 1 293 -20 1838 140 14 3 chr11 11525415 11525708 -137257764 + AluJb SINE Alu 4 299 -13 1017 78 35 0 chr11 11525750 11525891 -137257581 - AluSg/x SINE Alu -10 300 155 1465 50 0 28 chr11 11525991 11526172 -137257300 - AluY SINE Alu -135 176 1 5282 144 27 47 chr11 11526172 11527011 -137256461 - L1MA7 LINE L1 -136 6155 5314 1742 155 3 24 chr11 11527011 11527307 -137256165 + AluJo SINE Alu 1 290 -22 5282 144 27 47 chr11 11527307 11527621 -137255851 - L1MA7 LINE L1 -977 5314 4995 610 290 56 52 chr11 11527699 11527752 -137255720 - MIR SINE MIR -3 259 208 2394 87 7 0 chr11 11527752 11528050 -137255422 - AluY SINE Alu -11 300 1 610 290 56 52 chr11 11528050 11528248 -137255224 - MIR SINE MIR -54 208 7 488 48 71 36 chr11 11529561 11529645 -137253827 + L1MA4 LINE L1 6213 6299 -1 892 118 0 52 chr11 11529691 11529826 -137253646 + FLAM_C SINE Alu 1 128 -15 213 180 40 20 chr11 11529983 11530033 -137253439 + MIR3 SINE MIR 109 159 -49 443 191 0 75 chr11 11530670 11530764 -137252708 + MER21B LTR ERV1 1 87 -776 3458 197 78 30 chr11 11530788 11531560 -137251912 + MER21B LTR ERV1 19 827 -36 312 295 72 0 chr11 11532607 11532746 -137250726 - MIR SINE MIR -13 249 101 189 0 0 0 chr11 11535167 11535188 -137248284 + (CTG)n Simple_repeat Simple_repeat 3 23 0 188 295 16 16 chr11 11535251 11535312 -137248160 - L2 LINE L2 -4 3309 3249 317 288 24 0 chr11 11535841 11535966 -137247506 + L1MEc LINE L1 1545 1672 -4724 4891 221 78 41 chr11 11535972 11536227 -137247245 + L1M4 LINE L1 2901 3145 -3001 2791 52 41 9 chr11 11536227 11536570 -137246902 + L1PA7 LINE L1 5801 6154 0 4891 221 78 41 chr11 11536570 11536675 -137246797 + L1M4 LINE L1 3145 3245 -2901 1930 151 10 13 chr11 11536675 11536987 -137246485 + AluJb SINE Alu 1 311 -1 4891 221 78 41 chr11 11536987 11538552 -137244920 + L1M4 LINE L1 3245 4953 -1193 792 160 6 12 chr11 11538552 11538721 -137244751 + GA-rich Low_complexity Low_complexity 2 169 0 510 141 101 0 chr11 11538731 11538830 -137244642 + L1M4 LINE L1 4964 5072 -1074 561 254 6 48 chr11 11538885 11539050 -137244422 - MLT2F LTR ERVL -505 158 1 692 291 4 16 chr11 11539051 11539302 -137244170 + L1ME3A LINE L1 4932 5179 -967 1042 219 89 11 chr11 11539404 11539732 -137243740 + L1ME3A LINE L1 5258 5637 -533 1255 147 87 19 chr11 11539812 11540194 -137243278 - MLT2A2 LTR ERVL 0 453 146 390 58 0 0 chr11 11540188 11540240 -137243232 + MADE1 DNA Mariner 29 80 0 * 913 230 72 57 chr11 11540246 11540564 -137242908 + L1ME3A LINE L1 5840 6162 -8 230 203 31 0 chr11 11543309 11543373 -137240099 + MLT1H LTR MaLR 21 86 -463 1044 224 120 87 chr11 11543409 11543834 -137239638 - MER41B LTR ERV1 -35 600 162 1123 69 0 2 chr11 11545830 11546078 -137237394 + AluY SINE Alu 1 301 -10 263 286 133 0 chr11 11547435 11547540 -137235932 - MIR SINE MIR -65 197 79 757 296 98 24 chr11 11548897 11549502 -137233970 + L1MC4a LINE L1 5176 5849 -355 747 133 59 0 chr11 11549501 11549636 -137233836 + L1MD3 LINE L1 7729 7871 -124 * 265 231 0 0 chr11 11549638 11549690 -137233782 + LTR30 LTR ERV1 1 52 -670 1554 53 126 0 chr11 11549690 11549897 -137233575 + LTR12 LTR ERV1 53 285 -429 269 239 28 0 chr11 11549897 11549968 -137233504 + LTR30 LTR ERV1 552 624 -98 734 180 25 0 chr11 11549968 11550090 -137233382 + LTR12 LTR ERV1 359 483 -231 305 130 0 0 chr11 11550112 11550166 -137233306 + L1MD3 LINE L1 7942 7995 0 2399 103 0 0 chr11 11550427 11550739 -137232733 - AluSx SINE Alu 0 312 1 826 234 20 70 chr11 11550940 11551184 -137232288 - MIR SINE MIR -2 260 29 2453 82 3 0 chr11 11551537 11551842 -137231630 - AluSp SINE Alu -7 306 1 24 0 0 0 chr11 11552351 11552375 -137231097 + AT_rich Low_complexity Low_complexity 1 24 0 244 330 89 18 chr11 11552609 11552721 -137230751 - L2 LINE L2 -4 3268 3149 385 345 17 0 chr11 11552757 11552873 -137230599 - MER91A DNA MER1_type -77 119 2 22 35 0 0 chr11 11553479 11553508 -137229964 + AT_rich Low_complexity Low_complexity 1 29 0 698 230 35 74 chr11 11553519 11553589 -137229883 - Charlie7 DNA MER1_type -1920 692 621 1432 185 31 28 chr11 11553589 11553876 -137229596 + AluJo SINE Alu 1 288 -24 698 230 35 74 chr11 11553876 11554062 -137229410 - Charlie7 DNA MER1_type -1991 621 446 840 278 68 0 chr11 11554064 11554298 -137229174 + MIR SINE MIR 2 251 -11 2193 189 7 36 chr11 11554298 11554743 -137228729 - Tigger2a DNA MER2_type -1 433 2 344 231 16 58 chr11 11554777 11554898 -137228574 - Charlie7 DNA MER1_type -2170 442 327 288 263 53 21 chr11 11554992 11555087 -137228385 - Charlie7 DNA MER1_type -2428 184 87 222 233 0 0 chr11 11555090 11555150 -137228322 + (TA)n Simple_repeat Simple_repeat 1 60 0 754 163 27 54 chr11 11555150 11555297 -137228175 - MER7A DNA MER2_type 0 346 204 2585 94 20 8 chr11 11555298 11555649 -137227823 + THE1A LTR MaLR 1 355 0 10419 103 3 8 chr11 11555649 11557233 -137226239 + THE1A-int LTR MaLR 1 1580 0 2627 98 8 14 chr11 11557233 11557590 -137225882 + THE1A LTR MaLR 1 355 0 1387 145 10 0 chr11 11557590 11557797 -137225675 - MER7A DNA MER2_type -139 207 1 460 219 21 25 chr11 11557805 11558050 -137225422 + (TATG)n Simple_repeat Simple_repeat 1 244 0 346 255 0 59 chr11 11558051 11558153 -137225319 - Charlie7 DNA MER1_type -2512 100 5 198 315 27 27 chr11 11558417 11558490 -137224982 - L2 LINE L2 -4 3268 3196 23 54 0 0 chr11 11558574 11558611 -137224861 + AT_rich Low_complexity Low_complexity 1 37 0 429 20 0 0 chr11 11558721 11558771 -137224701 + (TG)n Simple_repeat Simple_repeat 2 51 0 1960 123 3 11 chr11 11558772 11559056 -137224416 - AluSx SINE Alu -30 282 1 324 266 48 48 chr11 11559148 11559272 -137224200 + L2 LINE L2 3189 3312 -1 415 301 74 40 chr11 11559320 11559413 -137224059 - MIR3 SINE MIR -8 200 112 1564 212 98 22 chr11 11559413 11559781 -137223691 + MSTD LTR MaLR 1 396 0 415 301 74 40 chr11 11559781 11559863 -137223609 - MIR3 SINE MIR -96 112 19 2181 90 11 0 chr11 11560292 11560596 -137222876 + AluSq SINE Alu 3 309 0 1545 205 7 3 chr11 11560617 11560915 -137222557 - L1MD3 LINE L1 -127 7868 7570 348 247 13 0 chr11 11561023 11561100 -137222372 - L2 LINE L2 -5 3308 3231 1148 334 87 23 chr11 11561104 11561888 -137221584 - L2 LINE L2 -245 3068 2236 760 250 102 12 chr11 11562104 11562478 -137220994 + Charlie7 DNA MER1_type 57 509 -2103 385 160 53 0 chr11 11562527 11562600 -137220872 + Charlie7 DNA MER1_type 1817 1893 -719 792 168 15 86 chr11 11562600 11562797 -137220675 - MER96B DNA MER1_type? 0 417 235 1774 179 145 81 chr11 11562801 11563471 -137220001 + Charlie7 DNA MER1_type 1898 2610 -2 192 125 0 0 chr11 11564493 11564525 -137218947 + (CGG)n Simple_repeat Simple_repeat 2 33 0 180 0 0 0 chr11 11565356 11565376 -137218096 + (T)n Simple_repeat Simple_repeat 1 20 0 598 292 23 12 chr11 11566913 11567084 -137216388 - MIR3 SINE MIR -6 202 30 1083 189 137 8 chr11 11567433 11567681 -137215791 + MER58 DNA MER1_type 1 280 -61 186 340 0 0 chr11 11568136 11568186 -137215286 + L2 LINE L2 3213 3262 -10 276 325 207 32 chr11 11568194 11568600 -137214872 - L3 LINE CR1 -18 1559 1083 412 219 52 10 chr11 11569110 11569206 -137214266 - MIR SINE MIR 0 262 163 512 315 158 20 chr11 11569830 11570322 -137213150 + L2 LINE L2 2148 2707 -607 518 216 74 27 chr11 11570407 11570555 -137212917 - MIR SINE MIR -30 232 78 567 192 110 107 chr11 11570628 11570699 -137212773 - HAL1 LINE L1 0 2507 2438 1766 157 109 3 chr11 11570699 11571012 -137212460 - MER7A DNA MER2_type -1 345 2 567 192 110 107 chr11 11571012 11571123 -137212349 - HAL1 LINE L1 -69 2438 2329 2398 77 0 7 chr11 11571123 11571422 -137212050 - AluSc SINE Alu -12 297 1 567 192 110 107 chr11 11571422 11571566 -137211906 - HAL1 LINE L1 -178 2329 2179 832 179 0 8 chr11 11571592 11571715 -137211757 - FLAM_C SINE Alu -20 123 2 1741 250 103 29 chr11 11571774 11571836 -137211636 - HAL1 LINE L1 -456 2051 1995 928 182 101 57 chr11 11571836 11572045 -137211427 + MER20 DNA MER1_type 2 219 0 1741 250 103 29 chr11 11572045 11572742 -137210730 - HAL1 LINE L1 -512 1995 1236 196 319 62 0 chr11 11572920 11573033 -137210439 + L2 LINE L2 2519 2638 -676 * 462 219 38 9 chr11 11573032 11573137 -137210335 - L2 LINE L2 -2 3311 3204 246 340 46 26 chr11 11573179 11573373 -137210099 + L2 LINE L2 2662 2859 -455 414 348 63 63 chr11 11573960 11574354 -137209118 + L2 LINE L2 2870 3263 -9 643 268 168 24 chr11 11574374 11574714 -137208758 + L2 LINE L2 2908 3296 -17 426 85 0 0 chr11 11574721 11574780 -137208692 + (GGGA)n Simple_repeat Simple_repeat 4 62 0 596 278 17 6 chr11 11575297 11575473 -137207999 - MER5B DNA MER1_type 0 178 1 327 384 141 0 chr11 11576042 11576339 -137207133 - L2 LINE L2 -2 3270 2932 723 243 53 70 chr11 11576440 11576683 -137206789 - MIR SINE MIR -4 258 20 2278 106 10 10 chr11 11576689 11577000 -137206472 - AluSx SINE Alu 0 312 2 208 351 236 3 chr11 11577171 11577464 -137206008 - L2 LINE L2 -670 2644 2284 947 128 54 0 chr11 11578613 11578762 -137204710 - AluSg/x SINE Alu -4 308 152 293 324 120 21 chr11 11578913 11579055 -137204417 + L2 LINE L2 3111 3266 -6 344 338 47 27 chr11 11579348 11579496 -137203976 - MIR SINE MIR -76 186 36 363 327 111 35 chr11 11580393 11580592 -137202880 + MIR SINE MIR 49 262 0 329 0 0 24 chr11 11580637 11580679 -137202793 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 20119 39 1 0 chr11 11580679 11583745 -137199727 - L1PA4 LINE L1 -11 6144 3071 2193 91 30 7 chr11 11584060 11584356 -137199116 - AluSx SINE Alu -9 303 1 470 283 43 8 chr11 11584869 11585021 -137198451 - MIR SINE MIR -67 141 36 596 267 27 14 chr11 11585217 11585363 -137198109 - MIR SINE MIR -34 228 81 868 245 65 86 chr11 11585386 11585769 -137197703 + MLT1I LTR MaLR 35 409 0 290 348 0 0 chr11 11585769 11585858 -137197614 - MIR SINE MIR -169 93 5 25 0 0 0 chr11 11585969 11585994 -137197478 + AT_rich Low_complexity Low_complexity 1 25 0 26 30 0 0 chr11 11586311 11586344 -137197128 + AT_rich Low_complexity Low_complexity 1 33 0 1426 204 50 66 chr11 11586897 11587293 -137196179 - MLT1B LTR MaLR 0 390 1 1967 144 0 22 chr11 11587662 11587974 -137195498 - AluSx SINE Alu -7 305 1 2049 94 7 21 chr11 11588954 11589267 -137194205 - AluSx SINE Alu 0 309 1 1507 207 78 21 chr11 11589553 11589925 -137193547 - L1ME1 LINE L1 -8 6158 5766 2415 48 21 0 chr11 11589941 11590230 -137193242 - AluY SINE Alu -16 295 1 243 265 294 0 chr11 11590246 11590348 -137193124 + MIR SINE MIR 104 235 -27 216 0 0 0 chr11 11591816 11591840 -137191632 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 3343 22 16 0 chr11 11591840 11592211 -137191261 - L1PA2 LINE L1 0 6155 5779 25 0 0 0 chr11 11592294 11592319 -137191153 + AT_rich Low_complexity Low_complexity 1 25 0 216 0 0 0 chr11 11592390 11592414 -137191058 + (CAA)n Simple_repeat Simple_repeat 3 26 0 821 339 93 13 chr11 11592498 11592958 -137190514 + L3 LINE CR1 1056 1552 -25 346 187 68 13 chr11 11594129 11594237 -137189235 + FRAM/FAM SINE Alu 11 73 -102 884 199 18 58 chr11 11596416 11596642 -137186830 - L1MA10 LINE L1 0 6334 6118 1194 136 57 0 chr11 11596652 11596948 -137186524 - L1P LINE L1 -730 5426 5106 3438 190 3 0 chr11 11597037 11597699 -137185773 - L1 LINE L1 -919 5227 4564 3598 108 124 47 chr11 11597709 11598387 -137185085 + L1PB4 LINE L1 5427 6156 0 1913 198 44 5 chr11 11598386 11598770 -137184702 - L1MA9 LINE L1 -188 6124 5726 * 1988 146 10 0 chr11 11598894 11599188 -137184284 + AluSx SINE Alu 1 297 -15 2064 111 7 30 chr11 11599322 11599619 -137183853 + AluSc SINE Alu 1 290 -19 221 106 0 85 chr11 11599704 11599751 -137183721 - L2 LINE L2 0 3313 3271 183 102 0 184 chr11 11599724 11599773 -137183699 - MIR SINE MIR -10 252 213 * 220 335 100 39 chr11 11600389 11600699 -137182773 + L2 LINE L2 858 1186 -2128 2293 285 191 13 chr11 11600847 11602064 -137181408 + L2 LINE L2 1808 3255 -58 447 257 142 0 chr11 11602246 11602394 -137181078 + L2 LINE L2 2587 2755 -559 754 183 14 0 chr11 11602562 11602704 -137180768 + L1MA8 LINE L1 6145 6288 -3 187 256 0 0 chr11 11604756 11604795 -137178677 + L2 LINE L2 3226 3264 -8 307 204 45 57 chr11 11606159 11606247 -137177225 - LTR33A LTR ERVL 0 523 437 241 280 140 64 chr11 11606374 11606531 -137176941 - MLT2E LTR ERVL -420 208 40 654 236 13 25 chr11 11606769 11606926 -137176546 - L2 LINE L2 0 3313 3159 1266 196 19 11 chr11 11606939 11607205 -137176267 - L1MB8 LINE L1 0 6178 5911 415 305 47 0 chr11 11607861 11607989 -137175483 + MIR SINE MIR 113 246 -16 738 214 107 28 chr11 11609005 11609220 -137174252 + MIR SINE MIR 18 249 -13 458 319 27 21 chr11 11609302 11609489 -137173983 + MIR SINE MIR 30 216 -46 461 249 112 6 chr11 11609837 11610006 -137173466 + MIR SINE MIR 73 259 -3 329 282 194 70 chr11 11610321 11610707 -137172765 - L2 LINE L2 -22 3250 2817 190 324 40 40 chr11 11610824 11610972 -137172500 - L2 LINE L2 -840 2474 2327 210 405 32 14 chr11 11612829 11613049 -137170423 - L2 LINE L2 -208 3064 2841 331 395 34 8 chr11 11613367 11613486 -137169986 + L2 LINE L2 3111 3232 -40 2094 118 3 23 chr11 11614314 11614619 -137168853 + AluSx SINE Alu 1 299 -13 885 253 54 8 chr11 11614975 11615216 -137168256 - MIR SINE MIR -10 252 1 2040 149 12 18 chr11 11615234 11615569 -137167903 + L1MB5 LINE L1 5842 6174 0 564 260 38 53 chr11 11617417 11617777 -137165695 - L1MC4a LINE L1 -85 6036 5684 188 245 20 0 chr11 11619157 11619206 -137164266 - L2 LINE L2 0 3313 3264 598 255 139 23 chr11 11619406 11619622 -137163850 - MIR SINE MIR 0 262 22 2385 81 0 19 chr11 11619622 11619930 -137163542 - AluSc SINE Alu -7 302 1 745 224 51 41 chr11 11620338 11620534 -137162938 + MIR SINE MIR 20 217 -45 366 127 18 0 chr11 11620710 11620765 -137162707 - MLT1B LTR MaLR 0 467 412 2090 110 3 32 chr11 11620803 11620833 -137162639 + MER1A DNA MER1_type 230 259 -2443 2177 115 0 3 chr11 11620833 11621128 -137162344 + AluSc SINE Alu 1 294 -15 2090 110 3 32 chr11 11621128 11621406 -137162066 + MER1A DNA MER1_type 259 529 0 1594 164 16 85 chr11 11621406 11621775 -137161697 - MLT1B LTR MaLR -47 343 1 332 309 36 27 chr11 11621875 11621985 -137161487 - MIR SINE MIR -131 131 21 402 272 24 0 chr11 11622103 11622228 -137161244 - MIR3 SINE MIR -4 204 77 433 311 40 6 chr11 11622905 11623082 -137160390 + MIR SINE MIR 62 244 -18 22 0 0 0 chr11 11623083 11623105 -137160367 + AT_rich Low_complexity Low_complexity 1 22 0 684 246 66 66 chr11 11623540 11623796 -137159676 + Charlie8 DNA MER1_type 31 286 -2131 181 246 0 66 chr11 11623965 11624026 -137159446 - MIR SINE MIR -2 260 204 1863 138 0 0 chr11 11624330 11624599 -137158873 + AluJb SINE Alu 26 294 -18 1038 295 107 44 chr11 11625122 11626794 -137156678 - L1P4 LINE L1 -529 5636 3838 1800 158 11 0 chr11 11626794 11627099 -137156373 + AluSx SINE Alu 1 308 0 1038 295 107 44 chr11 11627099 11627224 -137156248 - L1P4 LINE L1 -2327 3838 3722 198 0 0 0 chr11 11628945 11628967 -137154505 + (TTAAA)n Simple_repeat Simple_repeat 3 24 0 21 0 0 0 chr11 11629247 11629268 -137154204 + AT_rich Low_complexity Low_complexity 1 21 0 1158 273 129 19 chr11 11629451 11629979 -137153493 - L1ME3A LINE L1 -202 5968 5383 239 312 81 43 chr11 11630145 11630331 -137153141 + L2 LINE L2 2687 2879 -435 21 36 0 0 chr11 11631045 11631073 -137152399 + AT_rich Low_complexity Low_complexity 1 28 0 393 180 19 50 chr11 11631082 11631203 -137152269 - MIR SINE MIR -93 115 25 358 156 78 0 chr11 11632353 11632417 -137151055 + MER3 DNA MER1_type 40 108 -101 1873 121 71 4 chr11 11632646 11632927 -137150545 - L1MB7 LINE L1 -2 6182 5883 393 347 41 0 chr11 11633043 11633191 -137150281 - MIR SINE MIR -65 143 38 583 333 51 81 chr11 11634249 11634718 -137148754 + L2 LINE L2 2817 3271 -1 620 317 75 33 chr11 11635176 11635627 -137147845 + MLT1L LTR MaLR 142 611 -4 252 59 0 0 chr11 11636159 11636193 -137147279 + (TTA)n Simple_repeat Simple_repeat 1 34 0 243 255 96 0 chr11 11636206 11636300 -137147172 - L1ME3 LINE L1 -20 6142 6040 848 240 47 108 chr11 11636545 11636907 -137146565 + MER102b DNA MER1_type 2 341 0 258 321 252 0 chr11 11637064 11637195 -137146277 + MIR SINE MIR 86 249 -13 646 318 37 30 chr11 11637759 11638055 -137145417 + L2 LINE L2 2644 2941 -373 345 361 28 14 chr11 11638334 11638478 -137144994 + L2 LINE L2 3127 3272 0 195 302 0 19 chr11 11639850 11639903 -137143569 + MIR SINE MIR 35 86 -176 575 315 34 17 chr11 11640311 11640549 -137142923 + L2 LINE L2 2508 2749 -565 508 196 10 20 chr11 11640636 11640738 -137142734 - L2 LINE L2 0 3313 3213 1670 183 75 51 chr11 11642882 11642938 -137140534 - MLT2B1 LTR ERVL 0 414 361 477 0 0 0 chr11 11642938 11642991 -137140481 + (CA)n Simple_repeat Simple_repeat 2 54 0 1670 183 75 51 chr11 11642991 11643370 -137140102 - MLT2B1 LTR ERVL -53 361 3 561 217 78 0 chr11 11644124 11644253 -137139219 - L2 LINE L2 0 3313 3175 276 272 12 12 chr11 11644401 11644482 -137138990 - MLT1K LTR MaLR 0 588 508 232 210 48 16 chr11 11644742 11644804 -137138668 - MLT1K LTR MaLR -343 245 182 272 193 24 60 chr11 11645054 11645137 -137138335 + MIR SINE MIR 183 262 0 24 32 0 0 chr11 11645653 11645684 -137137788 + AT_rich Low_complexity Low_complexity 1 31 0 747 181 222 6 chr11 11645948 11646119 -137137353 + MER3 DNA MER1_type 1 208 -1 244 284 202 0 chr11 11646259 11646368 -137137104 - L2 LINE L2 -1 3271 3141 380 364 12 24 chr11 11646815 11646980 -137136492 - L2 LINE L2 -528 2786 2624 2382 94 0 0 chr11 11647303 11647601 -137135871 - AluY SINE Alu -13 298 1 376 368 118 0 chr11 11647972 11648176 -137135296 + L3 LINE CR1 1302 1529 -48 302 208 0 0 chr11 11648455 11648508 -137134964 + MER20 DNA MER1_type 167 219 0 265 310 155 8 chr11 11649288 11649417 -137134055 + MIR SINE MIR 22 169 -93 186 286 24 0 chr11 11649427 11649469 -137134003 + L2 LINE L2 3259 3301 -12 855 201 84 80 chr11 11649485 11649837 -137133635 - L1MA9 LINE L1 -25 6275 5928 811 203 7 0 chr11 11650209 11650362 -137133110 - FRAM SINE Alu -14 162 9 2411 66 3 13 chr11 11650379 11650682 -137132790 - AluY SINE Alu -11 300 1 1768 156 25 3 chr11 11651881 11652163 -137131309 + AluJb SINE Alu 1 288 -24 1714 201 27 70 chr11 11652248 11652662 -137130810 + MSTD LTR MaLR 1 396 0 2115 133 0 0 chr11 11652695 11652989 -137130483 + AluSx SINE Alu 1 294 -18 239 146 0 0 chr11 11653001 11653042 -137130430 + L1MC4 LINE L1 6663 6703 -1339 200 132 94 19 chr11 11653042 11653063 -137130409 + (CATA)n Simple_repeat Simple_repeat 4 22 -38 2458 190 68 6 chr11 11653063 11653536 -137129936 + MLT1D LTR MaLR 3 504 -1 200 132 94 19 chr11 11653536 11653567 -137129905 + (CATA)n Simple_repeat Simple_repeat 22 60 0 918 161 57 16 chr11 11653671 11653863 -137129609 + MIR SINE MIR 41 240 -22 357 252 173 22 chr11 11653855 11653994 -137129478 - MIR SINE MIR -100 162 3 * 37 23 0 0 chr11 11654132 11654176 -137129296 + AT_rich Low_complexity Low_complexity 1 44 0 852 292 67 29 chr11 11654358 11655050 -137128422 - L1MC4a LINE L1 -367 5795 5273 989 209 0 31 chr11 11655139 11655335 -137128137 + MER58A DNA MER1_type 27 216 -8 464 281 41 51 chr11 11655339 11655535 -137127937 - L1M4 LINE L1 -330 5791 5598 688 328 42 4 chr11 11655618 11655856 -137127616 - MIR SINE MIR -15 247 1 248 231 0 0 chr11 11656181 11656233 -137127239 + MIR SINE MIR 80 131 -131 18692 61 2 1 chr11 11656574 11659630 -137123842 + L1P LINE L1 11 3069 -3077 214 247 27 0 chr11 11759807 11759880 -137023592 + G-rich Low_complexity Low_complexity 3 77 0 21 71 0 0 chr11 11759919 11759961 -137023511 + GC_rich Low_complexity Low_complexity 1 42 0 191 59 0 59 chr11 11760521 11760555 -137022917 + (CGGGG)n Simple_repeat Simple_repeat 3 34 0 360 210 25 0 chr11 11761464 11761545 -137021927 + MIR SINE MIR 47 129 -133 663 284 43 43 chr11 11764375 11764629 -137018843 - MIR SINE MIR -1 261 8 194 427 68 0 chr11 11764910 11765027 -137018445 - MER5B DNA MER1_type -26 152 28 26 0 0 0 chr11 11765414 11765440 -137018032 + AT_rich Low_complexity Low_complexity 1 26 0 934 292 101 11 chr11 11765947 11766314 -137017158 - LTR16C LTR ERVL -16 475 76 648 301 44 40 chr11 11766393 11766619 -137016853 + MIR SINE MIR 35 261 -1 315 351 97 0 chr11 11768069 11768223 -137015249 + MIR SINE MIR 38 206 -56 2075 115 16 45 chr11 11768350 11768662 -137014810 + AluSx SINE Alu 1 303 -9 2294 83 0 7 chr11 11768662 11768989 -137014483 + AluSx SINE Alu 1 325 0 236 314 122 58 chr11 11769324 11769480 -137013992 - MIR3 SINE MIR -7 201 36 1446 122 19 14 chr11 11769492 11769730 -137013742 - AluSg/x SINE Alu 0 310 87 348 316 8 8 chr11 11770075 11770192 -137013280 - MIR SINE MIR -3 259 143 1800 152 17 26 chr11 11773780 11774082 -137009390 + AluJo SINE Alu 1 299 -13 268 326 42 0 chr11 11774809 11774904 -137008568 + MIR SINE MIR 109 207 -55 24 32 0 0 chr11 11775798 11775829 -137007643 + AT_rich Low_complexity Low_complexity 1 31 0 550 288 87 6 chr11 11776008 11776271 -137007201 - L1MC/D LINE L1 -480 5641 5401 621 134 31 0 chr11 11776292 11776389 -137007083 - MSTB1 LTR MaLR -13 419 320 729 272 35 17 chr11 11776770 11777002 -137006470 + MIR SINE MIR 14 249 -13 319 175 53 0 chr11 11777290 11777347 -137006125 + LTR40a LTR ERVL 3 62 -457 918 196 91 5 chr11 11777347 11777556 -137005916 - MSTB1 LTR MaLR -2 430 204 917 170 0 0 chr11 11777586 11777727 -137005745 - FLAM_C SINE Alu -2 141 1 875 183 118 0 chr11 11777727 11777896 -137005576 - MSTB1 LTR MaLR -236 190 2 1642 215 27 9 chr11 11777899 11778287 -137005185 + LTR40a LTR ERVL 58 519 0 189 269 51 115 chr11 11778287 11778521 -137004951 - L2 LINE L2 -227 3045 2827 397 323 87 0 chr11 11779183 11779344 -137004128 - MIR SINE MIR -35 227 53 3025 158 32 62 chr11 11779423 11780082 -137003390 - L1MB2 LINE L1 -7 6164 5526 419 318 13 7 chr11 11781510 11781661 -137001811 - MER117 DNA MER1_type -3 194 43 213 333 53 0 chr11 11781699 11781774 -137001698 - MIR3 SINE MIR -49 159 81 199 288 81 54 chr11 11782010 11782121 -137001351 + L2 LINE L2 3199 3312 -1 455 278 123 11 chr11 11782265 11782452 -137001020 - MIR SINE MIR -7 255 48 345 297 100 65 chr11 11783358 11783587 -136999885 - MIR SINE MIR -6 256 20 384 291 44 16 chr11 11783637 11783822 -136999650 - MIR SINE MIR -7 255 61 208 254 0 0 chr11 11784453 11784508 -136998964 + T-rich Low_complexity Low_complexity 1 55 0 1399 257 66 0 chr11 11784632 11785056 -136998416 + Charlie4a DNA MER1_type 56 507 -1 767 232 49 40 chr11 11789387 11789611 -136993861 + MIR SINE MIR 36 261 -1 748 148 0 37 chr11 11789686 11789821 -136993651 + FLAM_C SINE Alu 3 132 -1 799 110 0 15 chr11 11789840 11789976 -136993496 + (GAA)n Simple_repeat Simple_repeat 2 135 0 618 210 114 0 chr11 11790250 11790417 -136993055 - MER53 DNA DNA 0 189 4 333 173 102 87 chr11 11791784 11791911 -136991561 + MIR SINE MIR 18 146 -62 435 239 190 7 chr11 11792340 11792482 -136990990 - MIR SINE MIR -48 214 47 875 159 26 7 chr11 11793186 11793337 -136990135 - MLT1C LTR MaLR 0 467 314 1047 165 16 31 chr11 11793434 11793628 -136989844 - AluSg/x SINE Alu -4 306 116 1681 185 87 6 chr11 11793680 11794026 -136989446 + MSTD LTR MaLR 21 394 -2 278 202 83 36 chr11 11795076 11795160 -136988312 + MIR SINE MIR 62 149 -113 256 246 0 0 chr11 11796212 11796269 -136987203 - MIR SINE MIR -150 112 56 285 234 0 0 chr11 11796875 11796939 -136986533 - L2 LINE L2 -1 3312 3249 427 291 85 83 chr11 11797044 11797398 -136986074 - L1MC4a LINE L1 -297 5824 5495 1475 193 99 68 chr11 11797398 11797884 -136985588 - MLT1D LTR MaLR -2 503 3 427 291 85 83 chr11 11797884 11798109 -136985363 - L1MC4a LINE L1 -626 5495 5272 205 248 168 56 chr11 11798409 11798534 -136984938 + MIR SINE MIR 90 228 -34 456 145 12 12 chr11 11800247 11800330 -136983142 + AluJ/FLAM SINE Alu 2 84 -228 205 272 72 16 chr11 11802079 11802204 -136981268 + L2 LINE L2 2926 3057 -215 247 310 128 38 chr11 11802625 11802938 -136980534 - L2 LINE L2 -927 2387 2047 855 128 0 0 chr11 11803112 11803229 -136980243 + FLAM_C SINE Alu 7 123 -20 268 314 112 18 chr11 11804436 11804659 -136978813 - MIR SINE MIR -15 247 4 357 331 100 0 chr11 11805596 11805726 -136977746 - MIR SINE MIR -16 246 104 370 338 105 32 chr11 11805854 11806262 -136977210 - L2 LINE L2 -6 3266 2829 1097 215 67 38 chr11 11806785 11807104 -136976368 - MLT1D LTR MaLR -100 374 57 526 160 47 9 chr11 11807095 11807201 -136976271 - MLT1D LTR MaLR -361 144 35 * 335 290 105 0 chr11 11812585 11812709 -136970763 - MIR SINE MIR 0 262 126 1535 156 44 16 chr11 11812782 11813097 -136970375 + MER33 DNA MER1_type 1 324 0 233 160 20 20 chr11 11813805 11813855 -136969617 - L1MC/D LINE L1 -2048 5760 5711 317 82 41 0 chr11 11813879 11813928 -136969544 + AluY SINE Alu 85 135 -166 231 326 87 23 chr11 11814071 11814243 -136969229 - L1MC/D LINE L1 -529 5592 5410 385 279 101 73 chr11 11814270 11814696 -136968776 - L1MC/D LINE L1 -824 5322 4885 30 0 0 0 chr11 11815032 11815062 -136968410 + AT_rich Low_complexity Low_complexity 1 30 0 226 303 151 0 chr11 11815817 11815936 -136967536 + L2 LINE L2 3128 3264 -8 2033 158 74 12 chr11 11816584 11816988 -136966484 + MLT1C LTR MaLR 1 429 -38 859 43 29 22 chr11 11818588 11818726 -136964746 + (GAAA)n Simple_repeat Simple_repeat 1 139 0 431 311 64 38 chr11 11819269 11819594 -136963878 + L1ME2 LINE L1 5621 5953 -246 3205 164 36 93 chr11 11820067 11820903 -136962569 + L1PA16 LINE L1 4710 5593 -573 2500 112 16 19 chr11 11820903 11821279 -136962193 + THE1C LTR MaLR 1 375 0 9736 112 40 52 chr11 11821279 11822878 -136960594 + THE1B-int LTR MaLR 1 1580 0 2790 97 0 0 chr11 11822878 11823239 -136960233 + THE1B LTR MaLR 1 361 -3 3205 164 36 93 chr11 11823239 11823887 -136959585 + L1PA16 LINE L1 5590 6107 -59 186 71 0 0 chr11 11823896 11823924 -136959548 + (TAA)n Simple_repeat Simple_repeat 3 30 0 351 282 0 51 chr11 11825717 11825834 -136957638 - MER5B DNA MER1_type -1 177 67 1357 223 64 9 chr11 11826348 11826693 -136956779 + L1ME1 LINE L1 5803 6166 0 187 378 25 17 chr11 11826873 11826992 -136956480 + MIR SINE MIR 16 135 -73 549 294 23 14 chr11 11827083 11827297 -136956175 + MIR SINE MIR 47 262 0 396 250 214 14 chr11 11827996 11828136 -136955336 - MER5A DNA MER1_type -9 180 13 1618 116 102 69 chr11 11828573 11828897 -136954575 + THE1C LTR MaLR 1 340 -35 2200 93 41 0 chr11 11828897 11829188 -136954284 - AluY SINE Alu -7 304 2 1618 116 102 69 chr11 11829188 11829226 -136954246 + THE1C LTR MaLR 340 375 0 517 306 88 10 chr11 11829448 11829742 -136953730 - L2 LINE L2 0 3313 2997 1897 122 16 7 chr11 11829761 11830052 -136953420 + L1MB5 LINE L1 5254 5550 -624 2541 113 13 5 chr11 11830052 11830424 -136953048 + THE1C LTR MaLR 1 375 0 9604 130 37 40 chr11 11830424 11832004 -136951468 + THE1C-int LTR MaLR 1 1575 -5 2290 150 16 11 chr11 11832007 11832380 -136951092 + THE1C LTR MaLR 1 375 0 2886 179 69 14 chr11 11832381 11832973 -136950499 + L1MB5 LINE L1 5542 6166 -8 21 0 0 0 chr11 11833170 11833191 -136950281 + AT_rich Low_complexity Low_complexity 1 21 0 309 332 83 5 chr11 11833200 11833405 -136950067 + MIR SINE MIR 30 250 -12 3065 223 55 64 chr11 11833427 11834229 -136949243 - MER21B LTR ERV1 -60 803 9 3083 121 47 25 chr11 11834394 11834880 -136948592 - LOR1a LTR ERV1 0 497 1 3479 174 20 0 chr11 11835286 11835879 -136947593 - LTR31 LTR ERV1 0 619 15 1242 238 20 16 chr11 11836679 11836982 -136946490 + MER31B LTR ERV1 1 304 -162 2553 123 65 5 chr11 11836983 11837398 -136946074 + MER83 LTR ERV1 1 440 -8 923 195 11 16 chr11 11837399 11837589 -136945883 + MER31A LTR ERV1 297 485 0 2489 115 69 20 chr11 11838493 11838901 -136944571 + MSTA LTR MaLR 1 428 0 189 0 0 0 chr11 11838965 11838986 -136944486 + (TG)n Simple_repeat Simple_repeat 2 22 0 195 371 41 0 chr11 11839079 11839176 -136944296 - MER5B DNA MER1_type 0 178 78 1188 164 93 22 chr11 11840502 11840771 -136942701 - MER33 DNA MER1_type -36 288 1 255 294 37 0 chr11 11840841 11840950 -136942522 + L1ME LINE L1 5593 5705 -2103 383 314 114 11 chr11 11840960 11841135 -136942337 + MIR SINE MIR 20 212 -50 228 268 0 0 chr11 11841191 11841247 -136942225 + L1ME LINE L1 5736 5791 -330 218 340 87 0 chr11 11841252 11841355 -136942117 + L2 LINE L2 3199 3310 -3 12809 216 36 14 chr11 11841409 11845093 -136938379 + L1PA13 LINE L1 1085 4841 -1956 1216 214 33 17 chr11 11845068 11845367 -136938105 + L1PA15 LINE L1 3891 4194 -2603 * 6325 101 11 12 chr11 11845374 11847352 -136936120 + L1PA15 LINE L1 4830 6808 -8 473 179 28 28 chr11 11847360 11847466 -136936006 + L1M3 LINE L1 5406 5511 -660 2209 137 27 36 chr11 11847469 11847834 -136935638 - THE1B LTR MaLR -2 362 1 11254 98 13 12 chr11 11847837 11848864 -136934608 - THE1B-int LTR MaLR -28 1552 521 2035 135 37 0 chr11 11848864 11849161 -136934311 + AluSg SINE Alu 1 308 -2 11254 98 13 12 chr11 11849161 11849677 -136933795 - THE1B-int LTR MaLR -1059 521 7 2092 148 36 41 chr11 11849688 11850052 -136933420 - THE1B LTR MaLR 0 364 3 537 190 0 0 chr11 11850054 11850154 -136933318 + L1M3 LINE L1 5507 5606 -565 182 320 20 46 chr11 11851213 11851366 -136932106 + MIR SINE MIR 68 216 -46 361 244 13 0 chr11 11851535 11851613 -136931859 + MIR3 SINE MIR 83 161 -47 450 104 0 0 chr11 11851768 11851835 -136931637 - MER41A LTR ERV1 -86 468 402 1692 192 7 7 chr11 11852990 11853292 -136930180 + AluJo SINE Alu 1 302 -10 2066 141 6 13 chr11 11853292 11853605 -136929867 + AluJo SINE Alu 1 311 -1 888 128 32 166 chr11 11853610 11853883 -136929589 - MER33 DNA MER1_type -89 274 1 692 159 7 0 chr11 11853905 11854043 -136929429 + (CA)n Simple_repeat Simple_repeat 1 139 0 1769 139 157 16 chr11 11854099 11854474 -136928998 + MSTA LTR MaLR 1 428 0 200 306 81 18 chr11 11854477 11854588 -136928884 - L2 LINE L2 -190 3082 2965 382 289 0 0 chr11 11854649 11854732 -136928740 + MER58 DNA MER1_type 4 86 -255 620 202 0 0 chr11 11854732 11854846 -136928626 - AluJb SINE Alu -22 290 177 922 152 64 59 chr11 11855846 11855924 -136927548 - MER3 DNA MER1_type -2 207 131 1744 163 27 7 chr11 11855924 11856225 -136927247 + AluJb SINE Alu 5 311 -1 922 152 64 59 chr11 11856225 11856350 -136927122 - MER3 DNA MER1_type -78 131 3 427 260 10 0 chr11 11856523 11856627 -136926845 - MER8 DNA MER2_type -134 105 1 395 280 73 13 chr11 11856628 11856778 -136926694 + MIR SINE MIR 76 234 -28 2234 85 48 3 chr11 11857749 11858044 -136925428 + AluSg SINE Alu 1 308 -2 263 279 0 13 chr11 11858117 11858196 -136925276 + (CA)n Simple_repeat Simple_repeat 1 78 0 880 209 51 5 chr11 11859367 11859581 -136923891 + MIR SINE MIR 40 261 -1 1557 166 53 28 chr11 11859594 11859878 -136923594 - AluJo SINE Alu -21 291 1 578 210 76 32 chr11 11859920 11860005 -136923467 - L2 LINE L2 -4 3309 3229 2039 178 53 59 chr11 11860005 11860512 -136922960 + MLT1D LTR MaLR 1 504 -1 578 210 76 32 chr11 11860512 11860583 -136922889 - L2 LINE L2 -84 3229 3146 318 222 0 0 chr11 11861703 11861757 -136921715 + MER91 DNA MER1_type 127 180 -10 287 282 99 28 chr11 11862052 11862194 -136921278 + L1ME LINE L1 5600 5751 -370 2492 116 7 52 chr11 11862377 11862815 -136920657 - L1MA9 LINE L1 -3 6309 5892 1107 144 134 119 chr11 11862815 11862963 -136920509 + MER2 DNA MER2_type 16 160 -185 2094 132 0 0 chr11 11862963 11863273 -136920199 - AluSx SINE Alu -2 310 1 1107 144 134 119 chr11 11863273 11863444 -136920028 + MER2 DNA MER2_type 160 340 -5 573 92 0 0 chr11 11863452 11863528 -136919944 - L1MA9 LINE L1 -389 5902 5827 462 295 0 7 chr11 11863575 11863714 -136919758 - LTR16C LTR ERVL 0 491 354 826 178 7 0 chr11 11863718 11863864 -136919608 + FRAM SINE Alu 1 142 -34 519 254 146 9 chr11 11864085 11864298 -136919174 - Tigger8 DNA MER2_type -174 492 251 757 172 8 0 chr11 11864300 11864422 -136919050 + FLAM_A SINE Alu 1 123 -10 763 238 81 0 chr11 11864519 11864679 -136918793 - MIR SINE MIR -75 187 15 350 321 46 0 chr11 11864695 11864804 -136918668 - Tigger8 DNA MER2_type -518 148 35 2154 148 97 8 chr11 11865080 11865471 -136918001 + MSTA LTR MaLR 3 428 0 302 176 44 29 chr11 11865852 11865920 -136917552 - MLT1G LTR MaLR 0 590 522 802 156 38 59 chr11 11866020 11866206 -136917266 - MER53 DNA DNA -7 182 1 666 285 65 43 chr11 11866356 11866633 -136916839 - MLT1H1 LTR MaLR -272 283 1 31 26 0 0 chr11 11866892 11866930 -136916542 + AT_rich Low_complexity Low_complexity 1 38 0 1511 133 17 4 chr11 11867077 11867310 -136916162 - AluSx SINE Alu -75 237 2 1502 179 78 38 chr11 11867446 11867598 -136915874 + MLT1A1 LTR MaLR 5 149 -216 1893 146 3 3 chr11 11867598 11867899 -136915573 + AluJb SINE Alu 1 301 -11 1502 179 78 38 chr11 11867899 11868027 -136915445 + MLT1A1 LTR MaLR 149 304 -61 2067 119 0 0 chr11 11868027 11868321 -136915151 + AluSx SINE Alu 1 294 -18 1502 179 78 38 chr11 11868321 11868386 -136915086 + MLT1A1 LTR MaLR 304 365 0 351 286 124 0 chr11 11868422 11868527 -136914945 - L2 LINE L2 -13 3300 3183 418 214 0 0 chr11 11869148 11869232 -136914240 + MER103 DNA DNA 75 158 -8 1719 206 79 12 chr11 11869246 11869677 -136913795 + MLT1C LTR MaLR 6 465 -2 327 277 40 33 chr11 11869731 11869894 -136913578 - MIR SINE MIR -62 146 9 869 220 165 20 chr11 11870358 11870613 -136912859 + AluSg SINE Alu 1 292 -8 1576 167 7 7 chr11 11870622 11870909 -136912563 - AluJb SINE Alu -25 287 1 296 290 72 83 chr11 11871153 11871429 -136912043 - L1ME4a LINE L1 -244 5877 5605 1850 158 0 13 chr11 11871432 11871730 -136911742 - AluJb SINE Alu -18 294 1 2862 168 33 58 chr11 11871741 11872646 -136910826 - L1MB8 LINE L1 -2 6176 5217 1918 135 13 7 chr11 11872646 11872950 -136910522 - AluSx SINE Alu -6 306 1 2862 168 33 58 chr11 11872950 11873168 -136910304 - L1MB8 LINE L1 -961 5217 4995 1148 168 0 5 chr11 11873185 11873201 -136910271 + AluJb SINE Alu 118 133 -179 1597 132 48 44 chr11 11873201 11873496 -136909976 + AluSg SINE Alu 5 300 -10 1148 168 0 5 chr11 11873496 11873675 -136909797 + AluJb SINE Alu 133 312 0 1791 246 118 33 chr11 11873760 11874304 -136909168 - MLT1F1 LTR MaLR -2 565 2 287 199 80 119 chr11 11874359 11874510 -136908962 + MER5B DNA MER1_type 33 177 -1 198 0 0 0 chr11 11875329 11875351 -136908121 + (T)n Simple_repeat Simple_repeat 1 22 0 211 361 0 14 chr11 11875413 11875485 -136907987 + L2 LINE L2 3123 3193 -79 180 344 185 13 chr11 11875719 11876027 -136907445 - L3 LINE CR1 -114 1463 1103 2332 88 0 0 chr11 11876456 11876763 -136906709 + AluSg SINE Alu 1 307 -3 232 189 38 5 chr11 11878221 11878282 -136905190 + MIR SINE MIR 106 167 -41 510 313 53 31 chr11 11878677 11878904 -136904568 + MIR SINE MIR 19 250 -12 2128 102 7 10 chr11 11879990 11880293 -136903179 - AluSc SINE Alu -7 302 1 415 309 196 21 chr11 11880324 11880615 -136902857 - MLT1J2 LTR MaLR 0 450 109 2104 179 116 15 chr11 11880765 11881223 -136902249 + MLT1D LTR MaLR 1 504 -1 240 267 0 78 chr11 11881636 11881726 -136901746 + MIR SINE MIR 6 88 -174 1031 254 124 54 chr11 11881732 11882051 -136901421 - MLT1G1 LTR MaLR -1 578 219 774 162 0 22 chr11 11882051 11882187 -136901285 + FLAM_C SINE Alu 1 133 0 1031 254 124 54 chr11 11882187 11882423 -136901049 - MLT1G1 LTR MaLR -360 219 1 216 291 201 0 chr11 11882423 11882557 -136900915 + MIR SINE MIR 91 251 -11 203 321 0 37 chr11 11882550 11882631 -136900841 + L2 LINE L2 3199 3276 -37 * 1015 218 137 79 chr11 11882665 11883184 -136900288 - MLT1H LTR MaLR 0 549 1 305 279 89 32 chr11 11883329 11883487 -136899985 - MLT1L LTR MaLR -52 563 397 257 266 0 0 chr11 11883548 11883612 -136899860 - MLT1L LTR MaLR -343 272 209 1866 186 55 50 chr11 11883641 11884097 -136899375 - MLT1C LTR MaLR -5 462 5 183 129 0 0 chr11 11884173 11884204 -136899268 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 210 256 97 120 chr11 11885440 11885536 -136897936 + L2 LINE L2 2626 2723 -549 942 220 204 27 chr11 11885536 11885977 -136897495 + LTR33 LTR ERVL 3 521 0 210 256 97 120 chr11 11885977 11886032 -136897440 + L2 LINE L2 2723 2778 -494 1934 127 0 13 chr11 11886032 11886332 -136897140 + AluSq SINE Alu 1 296 -17 210 256 97 120 chr11 11886332 11886546 -136896926 + L2 LINE L2 2778 2981 -291 5915 101 7 1 chr11 11886566 11887396 -136896076 - L1PA10 LINE L1 -2 6166 5332 1655 132 18 0 chr11 11887395 11887676 -136895796 + L1PA10 LINE L1 5055 5340 -806 * 222 91 0 0 chr11 11887762 11887795 -136895677 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 13765 28 2 0 chr11 11888614 11890993 -136892479 - L1PA4 LINE L1 0 6155 3773 304 272 68 20 chr11 11891572 11891719 -136891753 + MLT1K LTR MaLR 402 555 -33 1424 237 27 29 chr11 11892090 11892503 -136890969 + L1ME3A LINE L1 5545 5956 -214 233 290 57 80 chr11 11892576 11892639 -136890833 + L1ME3A LINE L1 5988 6051 -119 2216 91 0 7 chr11 11892639 11892936 -136890536 - AluSx SINE Alu -17 295 1 233 290 57 80 chr11 11892936 11893048 -136890424 + L1ME3A LINE L1 6051 6159 -11 192 294 0 0 chr11 11893604 11893655 -136889817 + L2 LINE L2 3201 3251 -21 265 351 61 7 chr11 11895123 11895271 -136888201 + MIR3 SINE MIR 3 158 -50 988 156 18 6 chr11 11895671 11895838 -136887634 - FRAM SINE Alu -8 168 1 1652 200 74 56 chr11 11895870 11896330 -136887142 + MLT1H LTR MaLR 1 531 -24 1048 222 151 67 chr11 11896332 11896881 -136886591 - MLT1G1 LTR MaLR 0 595 1 236 203 0 81 chr11 11897067 11897141 -136886331 + MER117 DNA MER1_type 96 163 -34 1904 94 23 0 chr11 11897546 11897802 -136885670 + L1PA10 LINE L1 5905 6166 -2 650 119 0 10 chr11 11898461 11898562 -136884910 + AluSg/x SINE Alu 202 301 -9 1610 168 0 4 chr11 11898947 11899209 -136884263 - AluSx SINE Alu -49 263 3 267 312 0 11 chr11 11899614 11899707 -136883765 + CT-rich Low_complexity Low_complexity 5 96 0 206 125 0 25 chr11 11899709 11899749 -136883723 + (TTCC)n Simple_repeat Simple_repeat 3 41 0 299 243 28 103 chr11 11899800 11899907 -136883565 + MIR SINE MIR 49 146 -62 300 298 81 0 chr11 11900508 11900632 -136882840 + MER117 DNA MER1_type 9 142 -55 342 318 109 22 chr11 11900844 11901165 -136882307 + L1M4 LINE L1 4504 4852 -1294 909 150 0 0 chr11 11901502 11901635 -136881837 + FLAM_C SINE Alu 1 133 0 935 90 0 0 chr11 11902232 11902354 -136881118 + AluSg SINE Alu 1 122 -188 303 109 87 0 chr11 11902378 11902516 -136880956 + (TA)n Simple_repeat Simple_repeat 1 150 0 1165 140 5 0 chr11 11902521 11902707 -136880765 + AluSq SINE Alu 127 313 0 602 289 7 0 chr11 11903789 11903941 -136879531 - MIR SINE MIR -25 237 85 237 273 203 75 chr11 11904059 11904246 -136879226 - L2 LINE L2 0 3272 3062 592 222 105 6 chr11 11904252 11904414 -136879058 - MER5B DNA MER1_type 0 178 1 2888 123 27 7 chr11 11904504 11904953 -136878519 - LTR32 LTR ERVL 0 471 14 566 295 134 42 chr11 11904969 11905372 -136878100 - MLT1K LTR MaLR -61 527 88 183 260 82 41 chr11 11905454 11905527 -136877945 - L2 LINE L2 -568 2746 2671 1723 151 7 7 chr11 11905537 11905829 -136877643 - AluSx SINE Alu -7 305 14 324 194 58 87 chr11 11905858 11905961 -136877511 + AluJ/FLAM SINE Alu 1 61 -241 890 164 7 7 chr11 11906077 11906229 -136877243 + FRAM SINE Alu 1 146 -30 270 339 194 25 chr11 11906234 11906749 -136876723 - L2 LINE L2 -685 2629 2202 1620 161 33 13 chr11 11906749 11907054 -136876418 + AluJb SINE Alu 1 311 -1 270 339 194 25 chr11 11907054 11907282 -136876190 - L2 LINE L2 -1112 2202 1761 741 129 26 0 chr11 11907444 11907560 -136875912 + L1MB5 LINE L1 5948 6066 -108 355 90 62 0 chr11 11907583 11907641 -136875831 + L1MB5 LINE L1 6042 6103 -71 1723 144 41 0 chr11 11907644 11907935 -136875537 - AluSx SINE Alu 0 302 1 389 311 135 7 chr11 11907937 11908085 -136875387 - MIR SINE MIR -80 182 16 426 268 143 12 chr11 11909288 11909456 -136874016 + MIR SINE MIR 13 202 -60 1423 280 101 21 chr11 11909501 11909995 -136873477 - MLT2F LTR ERVL 0 663 109 2164 116 0 0 chr11 11909995 11910297 -136873175 + AluSx SINE Alu 1 302 -10 1423 280 101 21 chr11 11910297 11910416 -136873056 - MLT2F LTR ERVL -554 109 1 256 253 11 66 chr11 11911091 11911182 -136872290 - L2 LINE L2 -1 3271 3186 1223 269 68 37 chr11 11911234 11911662 -136871810 - LTR16C LTR ERVL 0 491 51 585 311 145 12 chr11 11911701 11912039 -136871433 + MLT1K LTR MaLR 32 414 -174 348 291 0 0 chr11 11912456 11912542 -136870930 + L2 LINE L2 3227 3312 -1 350 308 64 19 chr11 11912752 11912908 -136870564 + MIR SINE MIR 2 164 -98 586 237 79 0 chr11 11913097 11913236 -136870236 - MIR SINE MIR -107 155 6 2398 115 0 0 chr11 11914836 11915173 -136868299 - AluSq SINE Alu 0 337 1 315 122 0 0 chr11 11915216 11915265 -136868207 + (TCCC)n Simple_repeat Simple_repeat 3 51 0 2296 124 3 10 chr11 11915267 11915581 -136867891 - AluSx SINE Alu 0 312 1 240 163 0 0 chr11 11916238 11916281 -136867191 + CT-rich Low_complexity Low_complexity 2 44 0 1403 132 5 10 chr11 11916297 11916501 -136866971 - AluSx SINE Alu -107 205 3 601 251 86 11 chr11 11916926 11917113 -136866359 + MIR SINE MIR 10 210 -52 252 278 82 0 chr11 11917527 11917624 -136865848 - L2 LINE L2 -9 3263 3159 405 253 163 25 chr11 11919785 11919987 -136863485 - MIR SINE MIR -13 249 20 264 167 11 133 chr11 11921031 11921082 -136862390 - MIR SINE MIR -113 149 112 649 174 7 43 chr11 11921082 11921220 -136862252 + FLAM_C SINE Alu 1 133 0 264 167 11 133 chr11 11921220 11921258 -136862214 - MIR SINE MIR -150 112 71 1520 144 86 16 chr11 11921355 11921668 -136861804 + MER44D DNA MER2_type 3 607 -2 314 285 62 73 chr11 11921880 11922248 -136861224 - L1MC5 LINE L1 -41 7920 7557 855 188 8 0 chr11 11923303 11923436 -136860036 - AluJo SINE Alu -178 134 1 2303 96 13 7 chr11 11923792 11924095 -136859377 - AluY SINE Alu -6 305 1 234 0 0 0 chr11 11924169 11924195 -136859277 + (T)n Simple_repeat Simple_repeat 1 26 0 230 287 185 13 chr11 11926524 11926681 -136856791 + MIR SINE MIR 79 262 0 220 242 51 56 chr11 11927588 11927761 -136855711 - MIR3 SINE MIR 0 208 60 479 286 26 26 chr11 11929934 11930088 -136853384 + MIR SINE MIR 81 234 -28 2176 118 10 3 chr11 11930230 11930526 -136852946 - AluSx SINE Alu -14 298 1 335 310 0 10 chr11 11930761 11930861 -136852611 - L3 LINE CR1 -224 1353 1255 2217 234 96 10 chr11 11930868 11931548 -136851924 - HsTC2a DNA Tc2 -5 739 2 794 312 199 13 chr11 11931549 11932158 -136851314 - L3 LINE CR1 -319 1258 537 2307 80 0 7 chr11 11933081 11933370 -136850102 - AluSg SINE Alu -22 288 2 316 352 83 10 chr11 11933429 11933622 -136849850 + L1MC4a LINE L1 5870 6076 -1732 274 197 79 40 chr11 11934389 11934465 -136849007 - L2 LINE L2 -7 3265 3187 21 0 0 0 chr11 11934522 11934543 -136848929 + AT_rich Low_complexity Low_complexity 1 21 0 666 226 52 87 chr11 11935126 11935414 -136848058 - L2 LINE L2 0 3313 3036 510 259 20 27 chr11 11935691 11935838 -136847634 + MIR SINE MIR 108 253 -9 487 263 143 0 chr11 11936118 11936293 -136847179 - MIR SINE MIR -14 248 49 647 224 154 20 chr11 11936568 11936769 -136846703 + MIR SINE MIR 35 262 0 22 35 0 0 chr11 11936782 11936811 -136846661 + AT_rich Low_complexity Low_complexity 1 29 0 363 250 29 19 chr11 11937153 11937257 -136846215 - MIR SINE MIR -67 195 91 210 143 0 0 chr11 11937439 11937474 -136845998 + (T)n Simple_repeat Simple_repeat 1 35 0 1894 145 0 17 chr11 11937533 11937829 -136845643 - AluJo SINE Alu -19 293 3 2957 13 0 0 chr11 11938830 11939143 -136844329 + AluYb8 SINE Alu 1 313 -5 569 275 47 28 chr11 11939554 11939765 -136843707 + MIR SINE MIR 48 262 0 387 331 98 11 chr11 11939730 11939914 -136843558 - MIR SINE MIR -16 246 47 * 2264 114 13 0 chr11 11940892 11941200 -136842272 - AluSx SINE Alu 0 312 1 411 263 41 53 chr11 11941862 11942033 -136841439 + MIR SINE MIR 76 244 -18 316 217 0 0 chr11 11942465 11942534 -136840938 - MLT1K LTR MaLR -2 586 518 580 208 33 0 chr11 11942538 11942658 -136840814 + AluJo SINE Alu 13 136 -176 782 180 180 5 chr11 11943059 11943270 -136840202 - MIR SINE MIR -1 261 14 750 292 16 24 chr11 11943284 11943534 -136839938 - MIR SINE MIR -1 261 14 304 185 31 0 chr11 11943777 11943842 -136839630 - L2 LINE L2 0 3272 3206 398 301 76 59 chr11 11944069 11944305 -136839167 + MIR SINE MIR 3 242 -20 246 213 0 113 chr11 11944368 11944448 -136839024 - MIR3 SINE MIR -25 183 113 210 37 0 0 chr11 11945415 11945442 -136838030 + (TG)n Simple_repeat Simple_repeat 1 27 0 202 291 38 113 chr11 11946424 11946637 -136836835 + L2 LINE L2 3076 3272 0 233 336 52 15 chr11 11946878 11947012 -136836460 - MIR3 SINE MIR -41 167 29 336 282 118 20 chr11 11948042 11948237 -136835235 - MIR3 SINE MIR -46 216 3 223 220 0 0 chr11 11948258 11948308 -136835164 + L2 LINE L2 3263 3312 -1 326 323 27 48 chr11 11948997 11949183 -136834289 + MIR3 SINE MIR 5 186 -22 551 264 73 28 chr11 11949741 11949919 -136833553 - MIR3 SINE MIR -6 202 17 460 301 150 10 chr11 11950481 11950674 -136832798 - MIR SINE MIR -20 242 23 334 351 140 30 chr11 11950751 11951087 -136832385 - L2 LINE L2 -14 3258 2886 237 65 0 0 chr11 11951750 11951781 -136831691 + (GA)n Simple_repeat Simple_repeat 1 31 0 7060 45 7 0 chr11 11953829 11955042 -136828430 + L1PA5 LINE L1 4936 6154 0 289 216 81 0 chr11 11955142 11955216 -136828256 - L2 LINE L2 0 3272 3193 255 247 91 0 chr11 11955521 11955598 -136827874 + L2 LINE L2 3188 3271 -1 243 361 82 25 chr11 11955611 11955769 -136827703 - MER5B DNA MER1_type -1 177 11 631 253 19 0 chr11 11956710 11956868 -136826604 - MIR SINE MIR -74 188 28 485 337 93 51 chr11 11956907 11957686 -136825786 - L2 LINE L2 -257 3015 2205 279 319 58 5 chr11 11957777 11957965 -136825507 - L2 LINE L2 -1366 1948 1751 628 162 43 0 chr11 11958156 11958273 -136825199 + AluJb SINE Alu 188 309 -3 783 315 72 17 chr11 11959286 11959635 -136823837 - MLT1J2 LTR MaLR 0 450 83 2186 118 3 31 chr11 11959825 11960147 -136823325 + AluSq SINE Alu 1 313 0 1031 143 54 93 chr11 11960804 11960846 -136822626 - L1MB3 LINE L1 -9 6174 6132 1890 151 3 32 chr11 11960846 11961158 -136822314 - AluJo SINE Alu -9 303 1 1031 143 54 93 chr11 11961158 11961266 -136822206 - L1MB3 LINE L1 -51 6132 6036 1803 106 0 0 chr11 11961266 11961492 -136821980 - AluSg SINE Alu -21 289 64 1031 143 54 93 chr11 11961492 11961598 -136821874 - L1MB3 LINE L1 -147 6036 5927 787 260 104 12 chr11 11962258 11962596 -136820876 - L1ME4a LINE L1 -10 6111 5743 247 361 62 8 chr11 11962716 11962846 -136820626 + MIR SINE MIR 16 154 -54 21 57 0 0 chr11 11963071 11963106 -136820366 + AT_rich Low_complexity Low_complexity 1 35 0 231 232 0 0 chr11 11963116 11963172 -136820300 + (CA)n Simple_repeat Simple_repeat 1 56 0 214 254 0 34 chr11 11963175 11963234 -136820238 + (CATATA)n Simple_repeat Simple_repeat 5 61 0 570 196 12 24 chr11 11963237 11963405 -136820067 + (CATA)n Simple_repeat Simple_repeat 2 167 0 299 305 195 11 chr11 11965664 11965838 -136817634 - MIR SINE MIR -36 226 21 1238 152 39 17 chr11 11965854 11966085 -136817387 + MER46A DNA MER2_type 1 236 0 1114 171 5 14 chr11 11966475 11966686 -136816786 + AluSx SINE Alu 3 211 -101 219 186 0 0 chr11 11966695 11966738 -136816734 + GA-rich Low_complexity Low_complexity 2 44 0 533 190 0 10 chr11 11967397 11967497 -136815975 + AluJb SINE Alu 2 100 -212 279 290 83 59 chr11 11968601 11968770 -136814702 - MIR SINE MIR -12 250 78 1027 285 72 42 chr11 11968999 11969427 -136814045 + LTR16C LTR ERVL 51 491 0 218 275 11 66 chr11 11969479 11969570 -136813902 + L2 LINE L2 3186 3271 -1 520 252 87 0 chr11 11972117 11972244 -136811228 + MIR SINE MIR 18 155 -107 374 308 64 19 chr11 11972433 11972589 -136810883 - MIR SINE MIR -98 164 2 306 309 0 0 chr11 11972799 11972883 -136810589 - L2 LINE L2 -1 3312 3229 237 65 0 0 chr11 11973656 11973687 -136809785 + (GA)n Simple_repeat Simple_repeat 1 31 0 683 295 68 0 chr11 11974177 11974384 -136809088 + L2 LINE L2 3093 3313 0 277 339 161 0 chr11 11974588 11974718 -136808754 + L2 LINE L2 3105 3255 -17 2058 111 3 46 chr11 11975856 11976180 -136807292 + AluSq SINE Alu 1 310 -3 513 272 12 58 chr11 11976336 11976509 -136806963 + MIR SINE MIR 42 206 -56 1107 181 5 0 chr11 11976643 11976853 -136806619 + AluJb SINE Alu 92 302 -10 369 265 58 155 chr11 11977018 11977309 -136806163 + L2 LINE L2 2985 3247 -25 540 205 26 8 chr11 11978222 11978339 -136805133 + L1MB5 LINE L1 5948 6066 -108 259 157 59 0 chr11 11978367 11978418 -136805054 + L1MB7 LINE L1 6049 6102 -82 1313 176 40 15 chr11 11978423 11978716 -136804756 - AluSx SINE Alu 0 302 3 404 309 128 7 chr11 11978720 11978869 -136804603 - MIR SINE MIR -80 182 16 384 312 32 25 chr11 11980223 11980380 -136803092 + MIR SINE MIR 81 238 -24 336 206 41 14 chr11 11980530 11980603 -136802869 - AluSg/x SINE Alu -15 287 213 360 115 0 33 chr11 11980704 11980765 -136802707 + Alu SINE Alu 242 300 0 243 242 32 89 chr11 11981212 11981336 -136802136 + MLT1K LTR MaLR 411 527 -61 2336 183 27 7 chr11 11981352 11981801 -136801671 + LTR32 LTR ERVL 14 471 0 344 286 110 13 chr11 11981898 11982052 -136801420 + MER5B DNA MER1_type 8 176 -2 1191 197 32 12 chr11 11982181 11982430 -136801042 + MER61B LTR ERV1 172 425 0 243 273 124 8 chr11 11982558 11982679 -136800793 + LTR16A LTR ERVL 316 450 0 414 242 11 11 chr11 11982685 11982780 -136800692 - L2 LINE L2 -33 3280 3186 356 187 51 23 chr11 11982840 11982927 -136800545 + MLT1J LTR MaLR 239 411 -195 1140 197 87 3 chr11 11982927 11983226 -136800246 + MER33 DNA MER1_type 1 324 0 230 310 164 14 chr11 11983976 11984189 -136799283 - L1MC4a LINE L1 -1694 6114 5870 2103 87 0 7 chr11 11984248 11984537 -136798935 + AluSg SINE Alu 2 288 -22 1791 141 0 10 chr11 11985749 11986046 -136797426 + AluSx SINE Alu 2 295 -17 1315 249 27 29 chr11 11986182 11986595 -136796877 - L1ME3A LINE L1 -214 5956 5545 254 279 54 41 chr11 11986969 11987116 -136796356 - MLT1K LTR MaLR -38 550 402 771 304 77 23 chr11 11988109 11988458 -136795014 - MLT1J2 LTR MaLR 0 450 83 2083 112 3 31 chr11 11988648 11988970 -136794502 + AluSq SINE Alu 1 313 0 549 161 0 85 chr11 11989627 11989669 -136793803 - L1MB3 LINE L1 -9 6174 6130 1415 189 3 32 chr11 11989669 11989981 -136793491 - AluJo SINE Alu -9 303 1 549 161 0 85 chr11 11989981 11990068 -136793404 - L1MB3 LINE L1 -53 6130 6056 1333 140 0 18 chr11 11990089 11990318 -136793154 - AluSg/x SINE Alu -21 289 65 519 211 0 0 chr11 11990321 11990425 -136793047 - L1MB3 LINE L1 -153 6030 5927 1469 190 0 0 chr11 11990977 11991251 -136792221 + AluSx SINE Alu 3 276 -36 329 314 120 23 chr11 11992267 11992442 -136791030 + MIR SINE MIR 47 238 -24 * 496 284 53 21 chr11 11992437 11992627 -136790845 - MIR SINE MIR -19 243 48 2498 45 0 0 chr11 11993040 11993349 -136790123 - AluYb8 SINE Alu -7 311 3 524 304 179 9 chr11 11994560 11994784 -136788688 - MIR SINE MIR 0 262 1 287 281 0 0 chr11 11995140 11995197 -136788275 - L2 LINE L2 -16 3297 3241 205 205 26 0 chr11 11995990 11996029 -136787443 + L2 LINE L2 3255 3294 -19 587 304 78 0 chr11 11996677 11996881 -136786591 - MIR SINE MIR -14 248 29 914 240 86 5 chr11 11996933 11997154 -136786318 + MER8 DNA MER2_type 1 239 0 185 322 192 7 chr11 11999235 11999381 -136784091 + MIR SINE MIR 79 251 -11 520 257 22 22 chr11 11999906 12000042 -136783430 + MIR SINE MIR 16 151 -111 1522 157 39 0 chr11 12000042 12000297 -136783175 + MER2 DNA MER2_type 1 265 -80 381 271 119 46 chr11 12000435 12000586 -136782886 - MIR SINE MIR -34 228 67 1035 250 135 20 chr11 12000805 12001244 -136782228 + L2 LINE L2 2649 3036 -277 188 29 0 88 chr11 12001244 12001278 -136782194 + (CA)n Simple_repeat Simple_repeat 2 32 0 1035 250 135 20 chr11 12001278 12001302 -136782170 + L2 LINE L2 3036 3056 -257 195 42 0 0 chr11 12001302 12001326 -136782146 + (TC)n Simple_repeat Simple_repeat 1 24 0 1035 250 135 20 chr11 12001326 12001360 -136782112 + L2 LINE L2 3056 3085 -228 2151 120 0 0 chr11 12001360 12001668 -136781804 - AluSx SINE Alu -2 310 3 1035 250 135 20 chr11 12001668 12001730 -136781742 + L2 LINE L2 3085 3138 -175 1538 193 3 7 chr11 12001730 12002025 -136781447 - AluJb SINE Alu -18 294 1 1035 250 135 20 chr11 12002025 12002051 -136781421 + L2 LINE L2 3138 3313 0 2657 184 62 17 chr11 12002100 12002683 -136780789 + L1MB3 LINE L1 5568 6176 -7 644 177 14 14 chr11 12002701 12002842 -136780630 + Charlie5 DNA MER1_type 2238 2378 -234 1359 206 0 4 chr11 12003205 12003467 -136780005 + AluSx SINE Alu 3 263 -49 661 117 0 10 chr11 12003852 12003955 -136779517 - AluSg/x SINE Alu -9 301 200 1676 132 19 4 chr11 12004613 12004871 -136778601 - L1PA10 LINE L1 -2 6166 5905 236 203 0 81 chr11 12005278 12005352 -136778120 - MER117 DNA MER1_type -34 163 96 842 244 147 65 chr11 12005538 12006088 -136777384 + MLT1G1 LTR MaLR 1 595 0 804 184 81 10 chr11 12006316 12006541 -136776931 - MER61B LTR ERV1 -97 328 1 26 74 0 0 chr11 12006663 12006717 -136776755 + AT_rich Low_complexity Low_complexity 1 54 0 1461 226 33 19 chr11 12007170 12007532 -136775940 - L1MB4 LINE L1 -1 6179 5813 1399 134 61 4 chr11 12007535 12007812 -136775660 - Charlie5 DNA MER1_type -82 2530 2238 2674 174 58 28 chr11 12007818 12008416 -136775056 - L1MB3 LINE L1 0 6183 5568 248 157 135 90 chr11 12008465 12008491 -136774981 - L2 LINE L2 0 3313 3290 1242 235 3 3 chr11 12008491 12008785 -136774687 + AluJb SINE Alu 1 294 -18 248 157 135 90 chr11 12008785 12008847 -136774625 - L2 LINE L2 -23 3290 3221 1695 140 0 4 chr11 12008847 12009111 -136774361 + AluSq SINE Alu 3 265 -48 1049 131 0 0 chr11 12009313 12009473 -136773999 + FRAM SINE Alu 1 40 0 426 249 186 70 chr11 12009738 12009875 -136773597 - L1MC4a LINE L1 -1906 5902 5782 2050 112 0 0 chr11 12009875 12010175 -136773297 - AluSg SINE Alu 0 305 6 426 249 186 70 chr11 12010175 12010381 -136773091 - L1MC4a LINE L1 -2026 5782 5518 1695 157 3 0 chr11 12010679 12010965 -136772507 + AluJb SINE Alu 16 302 -10 435 253 58 154 chr11 12011130 12011422 -136772050 + L2 LINE L2 2985 3248 -24 1281 174 87 3 chr11 12012270 12012569 -136770903 - MER33 DNA MER1_type 0 324 1 356 187 51 23 chr11 12012569 12012656 -136770816 - MLT1J LTR MaLR -195 316 239 442 232 11 11 chr11 12012715 12012810 -136770662 + L2 LINE L2 3186 3280 -33 261 273 116 0 chr11 12012816 12012937 -136770535 - LTR16A LTR ERVL 0 450 316 696 159 8 8 chr11 12013065 12013191 -136770281 - MER61A LTR ERV1 0 343 218 942 235 25 42 chr11 12013812 12013972 -136769500 - MIR SINE MIR -25 237 81 1879 151 10 7 chr11 12013972 12014264 -136769208 + AluJb SINE Alu 6 298 -14 942 235 25 42 chr11 12014264 12014341 -136769131 - MIR SINE MIR -181 81 4 271 301 160 0 chr11 12015583 12015711 -136767761 - MIR SINE MIR -67 141 2 426 245 10 0 chr11 12015783 12015885 -136767587 - Charlie4a DNA MER1_type 0 508 406 927 188 35 99 chr11 12015910 12016192 -136767280 - Charlie4a DNA MER1_type -206 302 39 2208 111 3 49 chr11 12016803 12017128 -136766344 + AluSq SINE Alu 1 310 -3 512 272 12 58 chr11 12017285 12017458 -136766014 + MIR SINE MIR 42 206 -56 267 367 85 19 chr11 12017819 12018078 -136765394 - L2 LINE L2 -1303 2011 1736 1061 107 0 0 chr11 12019181 12019321 -136764151 + AluJb SINE Alu 156 295 -17 2560 107 43 36 chr11 12019340 12019779 -136763693 + MER4D LTR ERV1 457 898 -5 946 192 93 10 chr11 12019797 12020127 -136763345 - MER21B LTR ERV1 -467 396 3 209 228 0 35 chr11 12020140 12020197 -136763275 - L2 LINE L2 -1034 2280 2226 4385 157 27 29 chr11 12020357 12021558 -136761914 + L1MB3 LINE L1 4958 6157 -26 327 270 35 61 chr11 12021621 12021736 -136761736 - MIR SINE MIR -34 228 117 356 204 86 0 chr11 12022033 12022126 -136761346 + L2 LINE L2 2693 2793 -521 498 181 0 0 chr11 12022265 12022370 -136761102 + (TGGA)n Simple_repeat Simple_repeat 4 108 0 192 250 0 0 chr11 12022379 12022415 -136761057 - L2 LINE L2 -46 3267 3232 183 80 0 0 chr11 12023358 12023383 -136760089 + (T)n Simple_repeat Simple_repeat 1 25 0 22 35 0 0 chr11 12023636 12023665 -136759807 + AT_rich Low_complexity Low_complexity 1 29 0 226 214 0 0 chr11 12023725 12023767 -136759705 + MIR SINE MIR 110 151 -111 241 268 12 24 chr11 12024218 12024300 -136759172 + CT-rich Low_complexity Low_complexity 2 82 0 1336 167 53 17 chr11 12025164 12025463 -136758009 + MER33 DNA MER1_type 5 314 -10 1015 195 14 32 chr11 12025463 12025684 -136757788 + MER20 DNA MER1_type 1 217 -2 544 238 107 42 chr11 12025810 12025978 -136757494 + MIR SINE MIR 84 262 0 221 0 35 0 chr11 12026401 12026430 -136757042 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 248 356 70 0 chr11 12026430 12026545 -136756927 + L2 LINE L2 3150 3272 0 440 302 68 29 chr11 12027835 12028040 -136755432 + MIR SINE MIR 12 224 -38 180 0 0 0 chr11 12028104 12028124 -136755348 + (ATTTG)n Simple_repeat Simple_repeat 3 22 0 677 291 73 45 chr11 12028129 12028287 -136755185 - L2 LINE L2 -4 3309 3157 2284 108 0 23 chr11 12028287 12028592 -136754880 + AluSx SINE Alu 1 298 -14 677 291 73 45 chr11 12028592 12028605 -136754867 - L2 LINE L2 -156 3157 3146 2079 126 0 11 chr11 12028605 12028891 -136754581 + AluJb SINE Alu 20 302 -10 677 291 73 45 chr11 12028891 12029076 -136754396 - L2 LINE L2 -167 3146 2942 191 35 0 35 chr11 12029141 12029170 -136754302 + (CCCCCA)n Simple_repeat Simple_repeat 4 31 0 303 143 36 0 chr11 12029226 12029282 -136754190 + MER58 DNA MER1_type 2348 2405 -15 2260 105 0 14 chr11 12029601 12029897 -136753575 + AluSx SINE Alu 6 297 -15 490 291 33 39 chr11 12029943 12030125 -136753347 - MIR SINE MIR -8 254 74 189 319 51 0 chr11 12030724 12030802 -136752670 + MIR SINE MIR 17 99 -109 454 315 199 19 chr11 12030802 12031018 -136752454 + MIR SINE MIR 4 258 -4 329 255 101 60 chr11 12031011 12031160 -136752312 + MIR SINE MIR 92 246 -16 * 857 242 13 17 chr11 12031389 12031620 -136751852 + AluSg SINE Alu 56 285 -25 21 0 0 0 chr11 12031620 12031641 -136751831 + AT_rich Low_complexity Low_complexity 1 21 0 323 288 73 101 chr11 12031654 12031942 -136751530 + L1MC4a LINE L1 5775 6054 -1754 1127 131 0 0 chr11 12032041 12032201 -136751271 - FRAM SINE Alu 0 40 1 366 263 0 0 chr11 12032365 12032479 -136750993 + (TA)n Simple_repeat Simple_repeat 1 114 0 696 173 27 11 chr11 12032479 12032869 -136750603 + (TG)n Simple_repeat Simple_repeat 1 396 0 745 203 0 0 chr11 12032869 12032997 -136750475 - FLAM_C SINE Alu -14 129 2 752 255 10 25 chr11 12034301 12034497 -136748975 - MIR SINE MIR -1 261 69 269 250 0 0 chr11 12034496 12034552 -136748920 + L2 LINE L2 3256 3311 -2 * 257 303 20 10 chr11 12034752 12034851 -136748621 + MIR3 SINE MIR 96 195 -13 194 271 21 0 chr11 12035329 12035377 -136748095 + L2 LINE L2 3217 3265 -7 2411 98 0 13 chr11 12035849 12036165 -136747307 - AluSx SINE Alu 0 312 1 274 268 303 7 chr11 12038159 12038301 -136745171 + MIR SINE MIR 77 260 -2 21 0 0 0 chr11 12041449 12041470 -136742002 + AT_rich Low_complexity Low_complexity 1 21 0 1651 151 56 40 chr11 12041930 12042234 -136741238 + AluJo SINE Alu 1 309 -3 328 259 100 118 chr11 12042263 12042483 -136740989 + L1MC4 LINE L1 7826 8041 -1 1981 279 132 9 chr11 12042702 12043543 -136739929 - L2 LINE L2 -338 2976 2033 188 132 0 26 chr11 12043741 12043779 -136739693 + (TC)n Simple_repeat Simple_repeat 1 37 0 403 328 54 12 chr11 12044163 12044387 -136739085 + MIR SINE MIR 30 262 0 201 171 0 0 chr11 12044388 12044423 -136739049 + (TTA)n Simple_repeat Simple_repeat 2 36 0 557 269 130 23 chr11 12045086 12045302 -136738170 + MIR SINE MIR 14 252 -10 329 292 10 10 chr11 12045995 12046091 -136737381 + MIR SINE MIR 19 114 -148 617 230 93 0 chr11 12046117 12046256 -136737216 + MIR SINE MIR 89 240 -22 223 333 13 0 chr11 12047018 12047096 -136736376 - L2 LINE L2 -9 3304 3226 2351 91 0 10 chr11 12048787 12049085 -136734387 + AluSp SINE Alu 1 295 -18 931 254 45 0 chr11 12049273 12049493 -136733979 + MIR SINE MIR 28 257 -5 239 376 32 38 chr11 12049513 12049670 -136733802 + L2 LINE L2 3031 3186 -86 4227 166 62 8 chr11 12049736 12050823 -136732649 - L1MB7 LINE L1 0 6184 5034 195 258 146 30 chr11 12050831 12050966 -136732506 - MIR3 SINE MIR -75 133 2 211 325 0 36 chr11 12050972 12051055 -136732417 + L2 LINE L2 3193 3272 0 534 290 0 8 chr11 12051588 12051719 -136731753 + L2 LINE L2 3143 3272 0 196 236 18 18 chr11 12051929 12051984 -136731488 - L2 LINE L2 -557 2757 2703 1265 191 86 0 chr11 12052268 12052488 -136730984 - MER8 DNA MER2_type 0 239 1 648 294 78 0 chr11 12052540 12052744 -136730728 + MIR SINE MIR 29 248 -14 205 205 26 0 chr11 12053393 12053432 -136730040 - L2 LINE L2 -19 3294 3255 241 150 0 0 chr11 12054713 12054753 -136728719 - L2 LINE L2 -2 3270 3231 609 326 26 0 chr11 12055863 12056053 -136727419 - MIR SINE MIR -34 228 34 271 226 108 29 chr11 12056858 12056960 -136726512 - MIR SINE MIR -144 118 9 926 209 22 6 chr11 12057190 12057372 -136726100 + MER5A DNA MER1_type 5 189 0 216 0 0 0 chr11 12057949 12057973 -136725499 + (TG)n Simple_repeat Simple_repeat 1 24 0 796 228 179 8 chr11 12057975 12058243 -136725229 - MER58B DNA MER1_type -27 314 1 735 280 68 0 chr11 12058617 12058824 -136724648 + L2 LINE L2 3093 3313 0 257 323 141 0 chr11 12059058 12059157 -136724315 + L2 LINE L2 3143 3255 -17 996 97 18 24 chr11 12060052 12060217 -136723255 + MLT1C LTR MaLR 28 191 -276 216 0 0 0 chr11 12060295 12060319 -136723153 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1071 174 9 43 chr11 12060321 12060551 -136722921 - AluJb SINE Alu -31 281 60 1957 152 30 3 chr11 12060603 12060933 -136722539 + LTR32 LTR ERVL 14 352 -119 804 166 26 7 chr11 12060978 12061129 -136722343 + LTR32 LTR ERVL 318 471 0 2399 97 0 3 chr11 12061388 12061699 -136721773 - AluSx SINE Alu -2 310 1 831 239 44 5 chr11 12061797 12062002 -136721470 + MER20 DNA MER1_type 7 219 0 181 282 26 51 chr11 12062792 12062870 -136720602 + MIR SINE MIR 184 259 -3 269 263 33 25 chr11 12062894 12063012 -136720460 - MIR SINE MIR -50 212 94 257 188 0 0 chr11 12164996 12165044 -136618428 - Alu SINE Alu -252 48 1 2379 87 17 7 chr11 12165633 12165932 -136617540 - AluSq SINE Alu -11 302 1 719 196 94 86 chr11 12166195 12166440 -136617032 + MIR SINE MIR 2 248 -14 203 204 19 19 chr11 12166440 12166494 -136616978 + (CATAC)n Simple_repeat Simple_repeat 5 58 0 2078 134 0 0 chr11 12167206 12167513 -136615959 - AluSx SINE Alu 0 307 1 618 85 0 0 chr11 12170095 12170189 -136613283 + (TC)n Simple_repeat Simple_repeat 1 94 0 213 39 0 0 chr11 12171086 12171112 -136612360 + (T)n Simple_repeat Simple_repeat 1 26 0 421 318 62 26 chr11 12171261 12171456 -136612016 - MIR SINE MIR -14 248 47 353 336 7 0 chr11 12171827 12171964 -136611508 - MIR SINE MIR -13 249 112 697 133 0 0 chr11 12172065 12172170 -136611302 - AluSq/x SINE Alu -207 106 2 434 265 10 10 chr11 12172171 12172269 -136611203 - MER2 DNA MER2_type -247 98 1 * 581 191 0 0 chr11 12172269 12172383 -136611089 + MER2 DNA MER2_type 97 210 -135 24 32 0 0 chr11 12172393 12172424 -136611048 + AT_rich Low_complexity Low_complexity 1 31 0 261 318 12 35 chr11 12172537 12172622 -136610850 - L2 LINE L2 0 3313 3231 200 313 127 55 chr11 12173217 12173492 -136609980 - L2 LINE L2 -13 3259 2965 314 290 235 5 chr11 12173553 12173753 -136609719 + MIR SINE MIR 5 250 -12 819 316 178 27 chr11 12173770 12174890 -136608582 - L3 LINE CR1 -5 1572 284 2315 67 6 35 chr11 12174896 12175211 -136608261 - AluY SINE Alu 0 311 6 18891 67 13 1 chr11 12175311 12177947 -136605525 - L1P2 LINE L1 -608 5546 2882 306 194 0 30 chr11 12178048 12178115 -136605357 - Tigger7 DNA MER2_type -668 65 1 1988 148 7 0 chr11 12178160 12178463 -136605009 - AluSx SINE Alu -6 306 2 323 288 55 43 chr11 12178485 12178648 -136604824 + MIR SINE MIR 48 212 -50 286 329 30 18 chr11 12178770 12178934 -136604538 - MIR SINE MIR -3 259 94 434 271 33 0 chr11 12179259 12179381 -136604091 + L2 LINE L2 3188 3313 0 22267 39 3 0 chr11 12181154 12183833 -136599639 - L1P LINE L1 -2836 3310 623 756 56 0 0 chr11 12183833 12183922 -136599550 - L1P LINE L1 -6050 96 8 416 222 0 0 chr11 12183926 12183998 -136599474 + MER2 DNA MER2_type 274 345 0 1307 282 75 26 chr11 12183998 12184691 -136598781 + L1ME3 LINE L1 5225 5954 -208 416 39 0 0 chr11 12185467 12185518 -136597954 - L1P LINE L1 -2352 3794 3744 2298 110 0 0 chr11 12185647 12185946 -136597526 + AluSg SINE Alu 1 299 -11 18185 128 19 16 chr11 12185956 12188257 -136595215 + L1PA4 LINE L1 13 2324 -3822 216 0 0 0 chr11 12188257 12188281 -136595191 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 18185 128 19 16 chr11 12188281 12188841 -136594631 + L1PA4 LINE L1 2324 2881 -3265 16981 36 3 4 chr11 12188941 12191722 -136591750 + L1PA4 LINE L1 3370 6152 -3 1783 171 3 0 chr11 12191738 12192025 -136591447 - MER2 DNA MER2_type -57 288 1 356 299 17 0 chr11 12192099 12192237 -136591235 - L1M4 LINE L1 -1100 5046 4906 1201 254 64 34 chr11 12192351 12192917 -136590555 - L1M4 LINE L1 -1704 4442 3860 622 260 54 31 chr11 12193388 12193657 -136589815 + LTR40c LTR ERVL 154 464 -55 407 275 133 33 chr11 12194337 12194548 -136588924 - MIR SINE MIR -10 252 21 339 270 70 0 chr11 12195905 12196005 -136587467 + MIR SINE MIR 49 155 -107 2074 126 10 7 chr11 12196196 12196490 -136586982 - AluSx SINE Alu -17 295 1 2403 74 3 16 chr11 12197346 12197658 -136585814 - AluY SINE Alu -3 308 1 201 182 23 0 chr11 12198260 12198304 -136585168 - L2 LINE L2 0 3313 3269 764 167 0 22 chr11 12198401 12198539 -136584933 - MER119 DNA MER1_type -1 582 448 397 218 178 0 chr11 12198544 12198645 -136584827 - MER119 DNA MER1_type -462 121 3 2304 90 3 3 chr11 12198760 12199050 -136584422 + AluSq SINE Alu 9 298 -15 238 150 17 17 chr11 12200931 12200991 -136582481 + GA-rich Low_complexity Low_complexity 1 60 0 424 302 161 0 chr11 12202107 12202299 -136581173 + MIR SINE MIR 28 250 -12 22 0 0 0 chr11 12202909 12202931 -136580541 + AT_rich Low_complexity Low_complexity 1 22 0 284 332 65 32 chr11 12202953 12203200 -136580272 - MIR SINE MIR -7 255 1 889 179 25 46 chr11 12203766 12203962 -136579510 - MER3 DNA MER1_type -4 205 14 2222 129 0 0 chr11 12205221 12205530 -136577942 - AluSx SINE Alu -3 309 1 1879 142 43 58 chr11 12205557 12205951 -136577521 - MLT1B LTR MaLR 0 390 3 267 114 0 0 chr11 12207544 12207579 -136575893 + U2 snRNA snRNA 1 35 -153 315 266 32 40 chr11 12207784 12207908 -136575564 + MIR SINE MIR 59 181 -81 449 278 31 41 chr11 12208031 12208225 -136575247 + MIR SINE MIR 59 250 -12 397 308 57 106 chr11 12208258 12208625 -136574847 - L2 LINE L2 -8 3264 2916 257 247 181 24 chr11 12210885 12211051 -136572421 + MIR SINE MIR 71 262 0 2243 112 3 0 chr11 12211350 12211645 -136571827 - AluSx SINE Alu -16 296 1 1472 266 54 37 chr11 12211696 12212889 -136570583 + L1MEc LINE L1 46 4627 -1588 * 1897 222 49 86 chr11 12212875 12213698 -136569774 + L1M4 LINE L1 2132 2923 -3223 273 114 0 0 chr11 12213705 12213740 -136569732 - Alu SINE Alu -15 285 251 573 241 64 15 chr11 12213740 12213943 -136569529 + L1M4 LINE L1 2908 3120 -3026 * 1421 264 55 77 chr11 12213915 12214370 -136569102 + L1MEc LINE L1 1479 1943 -4272 2431 63 0 26 chr11 12214370 12214673 -136568799 + AluY SINE Alu 1 295 -16 1421 264 55 77 chr11 12214673 12215172 -136568300 + L1MEc LINE L1 1943 2368 -3847 198 0 0 0 chr11 12215172 12215194 -136568278 + (A)n Simple_repeat Simple_repeat 1 22 0 1421 264 55 77 chr11 12215194 12215709 -136567763 + L1MEc LINE L1 2368 2893 -3322 3411 138 28 32 chr11 12215730 12215967 -136567505 + MER39B LTR ERV1 48 284 -369 2374 66 3 10 chr11 12215967 12216271 -136567201 - AluY SINE Alu -9 302 1 3411 138 28 32 chr11 12216271 12216633 -136566839 + MER39B LTR ERV1 284 645 -8 1583 257 82 51 chr11 12216641 12217450 -136566022 + L1MEc LINE L1 2929 3773 -2442 1802 116 31 57 chr11 12217450 12217726 -136565746 + AluSg SINE Alu 1 269 -41 252 0 0 0 chr11 12217726 12217754 -136565718 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 1802 116 31 57 chr11 12217754 12217795 -136565677 + AluSg SINE Alu 269 310 0 1583 257 82 51 chr11 12217795 12217942 -136565530 + L1MEc LINE L1 3773 3914 -2301 * 7050 137 21 20 chr11 12217924 12219867 -136563605 + L1MA4 LINE L1 4179 6120 -249 1575 273 71 50 chr11 12219967 12222028 -136561444 - L1MC/D LINE L1 -748 5398 3694 23 33 0 0 chr11 12222512 12222542 -136560930 + AT_rich Low_complexity Low_complexity 1 30 0 1585 230 24 60 chr11 12222727 12222995 -136560477 - L1ME3 LINE L1 -2 6160 5884 2404 175 80 95 chr11 12222995 12223072 -136560400 + MLT1E1 LTR MaLR 1 78 -576 2044 139 3 0 chr11 12223072 12223366 -136560106 + AluSq SINE Alu 1 295 -18 2404 175 80 95 chr11 12223366 12223952 -136559520 + MLT1E1 LTR MaLR 78 654 0 1585 230 24 60 chr11 12223952 12223994 -136559478 - L1ME3 LINE L1 -278 5884 5842 2958 68 3 3 chr11 12223994 12224349 -136559123 - THE1A LTR MaLR 0 355 1 1585 230 24 60 chr11 12224349 12224571 -136558901 - L1ME3 LINE L1 -320 5842 5646 3238 188 6 30 chr11 12224571 12225204 -136558268 - MER67B LTR ERV1 0 661 44 477 167 48 0 chr11 12225238 12225322 -136558150 - MER67A LTR ERV1 -446 97 10 1367 218 30 52 chr11 12225327 12225732 -136557740 - L1ME3 LINE L1 -513 5649 5237 666 206 110 19 chr11 12225732 12225887 -136557585 - FAM SINE Alu -6 169 1 1367 218 30 52 chr11 12225887 12225930 -136557542 - L1ME3 LINE L1 -925 5237 5195 2020 137 70 20 chr11 12225930 12226287 -136557185 - THE1C LTR MaLR 0 375 1 1367 218 30 52 chr11 12226287 12226363 -136557109 - L1ME3 LINE L1 -967 5195 5054 1037 105 105 6 chr11 12226378 12226559 -136556913 + Charlie5 DNA MER1_type 1 199 -2413 523 222 0 0 chr11 12226558 12226666 -136556806 + Charlie5 DNA MER1_type 2352 2459 -153 * 582 200 77 7 chr11 12226692 12226847 -136556625 - L1M4 LINE L1 -743 5403 5238 1228 203 34 0 chr11 12226847 12227113 -136556359 + AluJo SINE Alu 33 307 -5 571 113 99 28 chr11 12227113 12227255 -136556217 + Charlie5 DNA MER1_type 2473 2624 0 1202 245 70 45 chr11 12227259 12227408 -136556064 - L1M4 LINE L1 -1107 5039 4895 2262 90 0 14 chr11 12227408 12227697 -136555775 + AluSp SINE Alu 1 285 -28 513 0 0 0 chr11 12227697 12227754 -136555718 + (CA)n Simple_repeat Simple_repeat 2 58 0 1202 245 70 45 chr11 12227754 12228089 -136555383 - L1M4 LINE L1 -1250 4896 4542 1762 153 55 15 chr11 12228089 12228162 -136555310 - MER44D DNA MER2_type -1882 609 540 1937 147 50 68 chr11 12228162 12228544 -136554928 - THE1C LTR MaLR 0 375 1 1762 153 55 15 chr11 12228544 12228796 -136554676 - MER44D DNA MER2_type -1951 540 1 374 222 99 19 chr11 12228800 12228962 -136554510 - L1M4 LINE L1 -1607 4539 4365 241 286 12 0 chr11 12228974 12229058 -136554414 - L1ME3 LINE L1 -1588 4558 4474 436 183 147 84 chr11 12229128 12229319 -136554153 - L1ME3A LINE L1 -20 6150 5948 271 294 49 35 chr11 12229332 12229475 -136553997 - L1ME3A LINE L1 -289 5881 5737 4867 212 52 26 chr11 12229512 12230937 -136552535 - L1ME1 LINE L1 -2 6164 4664 1936 147 10 32 chr11 12230937 12231249 -136552223 - AluJo SINE Alu -7 305 1 4867 212 52 26 chr11 12231249 12232051 -136551421 - L1ME1 LINE L1 -1502 4664 3884 1546 204 87 45 chr11 12233571 12234017 -136549455 - MLT1C LTR MaLR -2 465 1 1217 173 27 32 chr11 12234108 12234328 -136549144 + MER20 DNA MER1_type 1 219 0 2243 111 10 0 chr11 12234587 12234884 -136548588 - AluSx SINE Alu -12 300 1 310 345 110 45 chr11 12235049 12235249 -136548223 - L2 LINE L2 -15 3257 3045 930 268 59 13 chr11 12235446 12235752 -136547720 - LTR16B LTR ERVL -4 460 141 203 334 149 20 chr11 12236039 12236395 -136547077 + L2 LINE L2 1914 2315 -999 2181 99 20 0 chr11 12236991 12237285 -136546187 + AluSq SINE Alu 1 300 -13 995 141 53 12 chr11 12237285 12237455 -136546017 + AluSg/x SINE Alu 134 310 -2 264 236 66 75 chr11 12238479 12238585 -136544887 - MIR SINE MIR -63 145 41 2241 109 0 3 chr11 12240353 12240657 -136542815 + AluSg SINE Alu 1 303 -7 206 237 0 0 chr11 12242877 12242915 -136540557 + polypyrimidine Low_complexity Low_complexity 2 39 0 1709 144 3 80 chr11 12244845 12245158 -136538314 - AluJb SINE Alu -23 289 1 1728 218 73 18 chr11 12245163 12245691 -136537781 - L1ME3A LINE L1 -8 6162 5582 332 313 80 18 chr11 12245695 12245807 -136537665 - MIR SINE MIR -62 146 28 811 195 133 17 chr11 12246250 12246433 -136537039 - MER5C DNA MER1_type -55 269 50 4156 83 0 12 chr11 12246433 12246950 -136536522 + MER9 LTR ERVK 1 511 0 811 195 133 17 chr11 12246950 12247007 -136536465 - MER5C DNA MER1_type -274 50 1 1267 202 132 60 chr11 12247117 12247588 -136535884 + MER110A LTR ERV1 11 491 0 487 273 60 33 chr11 12247853 12248003 -136535469 + MER5A DNA MER1_type 36 189 0 337 253 13 13 chr11 12248010 12248085 -136535387 - MIR SINE MIR -55 153 79 21 0 0 0 chr11 12248327 12248348 -136535124 + AT_rich Low_complexity Low_complexity 1 21 0 210 91 0 0 chr11 12249691 12249724 -136533748 + (GGGA)n Simple_repeat Simple_repeat 3 35 0 316 275 88 114 chr11 12250084 12250426 -136533046 + L1M2 LINE L1 776 1108 -5741 186 43 0 0 chr11 12250793 12250816 -136532656 + (T)n Simple_repeat Simple_repeat 1 23 0 970 189 87 33 chr11 12250969 12251054 -136532418 - L1MA4 LINE L1 -5 6295 6216 4427 78 5 7 chr11 12251054 12251605 -136531867 - MER41A LTR ERV1 -4 550 1 970 189 87 33 chr11 12251605 12251794 -136531678 - L1MA4 LINE L1 -84 6216 6006 937 282 95 37 chr11 12252280 12252383 -136531089 - L3 LINE CR1 -323 1254 1158 1225 262 84 25 chr11 12252383 12252872 -136530600 - LTR33 LTR ERVL -1 520 3 937 282 95 37 chr11 12252872 12253233 -136530239 - L3 LINE CR1 -419 1158 763 1446 146 75 4 chr11 12253736 12253976 -136529496 - Tigger2 DNA MER2_type -1 2717 2461 4515 139 23 18 chr11 12254021 12254760 -136528712 - Tigger2 DNA MER2_type -1974 744 2 668 284 57 9 chr11 12254911 12255122 -136528350 + MIR SINE MIR 16 236 -26 367 158 0 0 chr11 12255892 12255949 -136527523 - FLAM SINE Alu -8 125 69 * 829 186 18 6 chr11 12255946 12256113 -136527359 - Tigger2 DNA MER2_type -2545 173 5 1415 277 40 55 chr11 12256557 12257276 -136526196 - L2 LINE L2 -1 3312 2610 1872 149 27 0 chr11 12257276 12257571 -136525901 + AluJo SINE Alu 1 303 -9 1415 277 40 55 chr11 12257571 12257787 -136525685 - L2 LINE L2 -703 2610 2392 1273 204 59 65 chr11 12257790 12258128 -136525344 - MER58B DNA MER1_type -2 339 4 511 360 40 26 chr11 12258445 12258748 -136524724 + L2 LINE L2 2818 3124 -148 453 298 38 0 chr11 12258877 12259008 -136524464 + MIR3 SINE MIR 64 199 -9 214 333 0 14 chr11 12259586 12259655 -136523817 + L2 LINE L2 3202 3269 -3 195 42 0 0 chr11 12259776 12259800 -136523672 + (TG)n Simple_repeat Simple_repeat 2 25 0 252 270 70 20 chr11 12261369 12261469 -136522003 - L2 LINE L2 0 3313 3209 219 193 333 0 chr11 12261563 12261620 -136521852 - L2 LINE L2 -17 3296 3221 347 251 31 68 chr11 12261678 12261841 -136521631 - MER103 DNA DNA -3 163 7 2145 128 14 0 chr11 12262409 12262706 -136520766 + AluSx SINE Alu 1 301 -11 395 292 0 17 chr11 12262792 12262912 -136520560 + L1ME LINE L1 5547 5664 -457 1021 238 135 29 chr11 12263815 12264180 -136519292 + L2 LINE L2 2287 2709 -605 1776 149 66 0 chr11 12264180 12264468 -136519004 - AluSx SINE Alu -5 307 1 1021 238 135 29 chr11 12264468 12264547 -136518925 + L2 LINE L2 2709 2778 -536 438 228 55 39 chr11 12264520 12264647 -136518825 + L2 LINE L2 3182 3310 -3 * 2328 66 3 26 chr11 12265285 12265594 -136517878 + AluY SINE Alu 1 297 -14 470 238 94 44 chr11 12266832 12267246 -136516226 + LTR33A LTR ERVL 1 515 -8 351 292 0 0 chr11 12267316 12267412 -136516060 + MIR SINE MIR 63 158 -104 240 314 58 64 chr11 12268916 12269072 -136514400 + L2 LINE L2 3076 3230 -42 283 289 91 56 chr11 12269328 12269636 -136513836 - MLT1H LTR MaLR -112 297 19 610 295 16 0 chr11 12269713 12269915 -136513557 + MIR SINE MIR 56 262 0 480 284 77 45 chr11 12270427 12270740 -136512732 - L2 LINE L2 -1389 1925 1603 3489 257 51 32 chr11 12270874 12272272 -136511200 - L2 LINE L2 -4 3309 1877 639 227 33 0 chr11 12272839 12272989 -136510483 + MIR SINE MIR 108 262 0 309 288 63 9 chr11 12273185 12273296 -136510176 + MER5A DNA MER1_type 4 120 -69 267 340 124 29 chr11 12273296 12273537 -136509935 - L2 LINE L2 -10 3303 3040 979 246 153 61 chr11 12273560 12274051 -136509421 - MLT1H LTR MaLR -13 536 1 243 338 114 1 chr11 12274051 12274301 -136509171 - L2 LINE L2 -228 3044 2762 3623 126 55 7 chr11 12274304 12274924 -136508548 - Tigger3(Golem) DNA MER2_type 0 3029 2380 924 229 14 9 chr11 12274915 12275125 -136508347 - Tigger3(Golem) DNA MER2_type -2818 211 1 * 216 322 42 42 chr11 12275138 12275256 -136508216 - L2 LINE L2 -575 2739 2622 1215 269 142 40 chr11 12275289 12275963 -136507509 - L2 LINE L2 -801 2513 1771 243 250 0 16 chr11 12276006 12276070 -136507402 - MIR SINE MIR -65 143 81 471 284 0 14 chr11 12276095 12276236 -136507236 - MLT1K LTR MaLR -5 583 445 2073 166 17 64 chr11 12276952 12277361 -136506111 - MLT1B LTR MaLR 0 390 1 190 312 176 8 chr11 12278180 12278305 -136505167 - MIR SINE MIR 0 262 117 991 203 22 0 chr11 12279921 12280163 -136503309 + L1MB3 LINE L1 5652 5902 -269 674 148 12 86 chr11 12280167 12280329 -136503143 + L1MB3 LINE L1 6034 6183 0 197 297 54 68 chr11 12280449 12280597 -136502875 + MER5A DNA MER1_type 22 167 -22 * 344 288 22 29 chr11 12280483 12280622 -136502850 - MER5A DNA MER1_type -44 145 8 4295 120 14 72 chr11 12281475 12282209 -136501263 - LTR8 LTR ERV1 0 691 1 294 277 0 24 chr11 12282987 12283070 -136500402 + (TATG)n Simple_repeat Simple_repeat 3 83 0 1654 140 0 23 chr11 12283164 12283428 -136500044 + AluJb SINE Alu 2 259 -53 225 346 0 58 chr11 12283974 12284078 -136499394 - MIR3 SINE MIR 0 208 111 411 155 0 0 chr11 12284152 12284236 -136499236 + (CA)n Simple_repeat Simple_repeat 2 85 0 296 284 55 9 chr11 12285159 12285268 -136498204 + L2 LINE L2 3200 3313 0 2111 144 0 0 chr11 12286132 12286444 -136497028 - AluSx SINE Alu 0 312 1 307 286 125 0 chr11 12286460 12286572 -136496900 - MIR SINE MIR -66 196 71 196 128 21 21 chr11 12287887 12287934 -136495538 + GA-rich Low_complexity Low_complexity 2 48 0 257 277 0 0 chr11 12288762 12288827 -136494645 + CT-rich Low_complexity Low_complexity 4 68 0 309 330 28 0 chr11 12289316 12289425 -136494047 - L2 LINE L2 0 3313 3202 396 0 0 0 chr11 12291373 12291417 -136492055 + (TCC)n Simple_repeat Simple_repeat 3 46 0 2120 141 0 0 chr11 12291711 12292015 -136491457 - AluSx SINE Alu -8 304 1 644 140 9 26 chr11 12292015 12292129 -136491343 - AluJo SINE Alu -2 310 199 885 175 7 0 chr11 12292129 12292272 -136491200 - AluJo SINE Alu -168 144 1 313 332 76 58 chr11 12292275 12292498 -136490974 - L1ME4a LINE L1 -222 5899 5673 26 50 0 0 chr11 12292579 12292619 -136490853 + AT_rich Low_complexity Low_complexity 1 40 0 1095 287 74 13 chr11 12297350 12297879 -136485593 + L1ME4a LINE L1 5559 6119 -2 603 151 0 59 chr11 12298781 12298900 -136484572 + MER21B LTR ERV1 356 467 -396 978 280 16 0 chr11 12299195 12299452 -136484020 - MIR SINE MIR 0 262 2 1096 162 126 41 chr11 12301543 12301764 -136481708 + L1MB3 LINE L1 5889 6139 -44 2267 105 3 0 chr11 12301764 12302070 -136481402 + AluSp SINE Alu 1 307 -6 1096 162 126 41 chr11 12302070 12302119 -136481353 + L1MB3 LINE L1 6139 6182 -1 268 353 26 0 chr11 12302222 12302338 -136481134 - MIR SINE MIR -60 148 30 318 322 82 13 chr11 12302573 12302755 -136480717 + MIR SINE MIR 41 241 -21 395 242 0 32 chr11 12302780 12302875 -136480597 + MER21B LTR ERV1 1 92 -771 1953 231 58 9 chr11 12302875 12303320 -136480152 + MER21B LTR ERV1 43 509 -354 308 232 0 3 chr11 12303316 12303388 -136480084 - MER21B LTR ERV1 -298 633 497 * 22 0 0 0 chr11 12305377 12305399 -136478073 + AT_rich Low_complexity Low_complexity 1 22 0 346 248 73 0 chr11 12305705 12305814 -136477658 - MER5C DNA MER1_type 0 324 208 206 244 0 0 chr11 12305880 12305925 -136477547 - MER5C DNA MER1_type -279 45 1 260 327 9 0 chr11 12306376 12306462 -136477010 + MIR SINE MIR 86 151 -57 1059 62 0 0 chr11 12306537 12306666 -136476806 + L1MA1 LINE L1 6174 6302 0 326 276 123 18 chr11 12307560 12307723 -136475749 - MIR SINE MIR -33 229 50 419 349 20 0 chr11 12307831 12307977 -136475495 - MIR SINE MIR -44 218 70 278 53 0 0 chr11 12309434 12309472 -136474000 - MIR SINE MIR -135 127 90 487 274 40 67 chr11 12309888 12310187 -136473285 + L2 LINE L2 3017 3307 -6 875 168 0 37 chr11 12310189 12310350 -136473122 + FRAM SINE Alu 8 162 -14 229 250 92 0 chr11 12311236 12311312 -136472160 - MIR SINE MIR -67 141 59 259 286 14 0 chr11 12312558 12312628 -136470844 + L2 LINE L2 3200 3270 -2 236 330 0 10 chr11 12314875 12314975 -136468497 + MER5A DNA MER1_type 13 111 -78 563 203 35 35 chr11 12314982 12315125 -136468347 - MER5B DNA MER1_type -3 175 33 1134 155 58 10 chr11 12317030 12317237 -136466235 + MER58A DNA MER1_type 8 224 0 423 290 124 0 chr11 12317722 12317891 -136465581 + MIR SINE MIR 29 218 -44 2484 187 69 4 chr11 12318067 12318576 -136464896 - L1MD3 LINE L1 0 7995 7454 417 226 20 0 chr11 12319134 12319236 -136464236 - MER5A DNA MER1_type -77 112 9 217 220 85 0 chr11 12320507 12320566 -136462906 - MIR SINE MIR -149 113 50 448 254 7 63 chr11 12321416 12321558 -136461914 - MER94 DNA DNA 0 134 1 370 340 38 6 chr11 12323639 12323798 -136459674 + MIR SINE MIR 49 212 -50 534 206 0 0 chr11 12323819 12323916 -136459556 - Tigger7 DNA MER2_type 0 2491 2395 392 179 30 0 chr11 12323914 12323981 -136459491 - Tigger7 DNA MER2_type -284 266 198 * 228 250 0 0 chr11 12326849 12326913 -136456559 + L2 LINE L2 2219 2282 -1032 1361 130 77 38 chr11 12327082 12327343 -136456129 - L1MB8 LINE L1 0 6178 5908 1357 144 52 45 chr11 12327386 12327498 -136455974 - L1MB8 LINE L1 -252 5926 5816 2378 94 0 0 chr11 12327498 12327796 -136455676 - AluSx SINE Alu -10 302 5 1357 144 52 45 chr11 12327796 12327974 -136455498 - L1MB8 LINE L1 -362 5816 5634 282 56 0 0 chr11 12328276 12328312 -136455160 + (A)n Simple_repeat Simple_repeat 1 36 0 616 238 23 35 chr11 12328432 12328604 -136454868 - MIR SINE MIR -7 255 86 1312 255 115 15 chr11 12328611 12329003 -136454469 - MLT1J2 LTR MaLR 0 450 20 300 182 30 0 chr11 12329017 12329083 -136454389 - MIR SINE MIR -177 85 18 752 271 19 5 chr11 12329238 12329445 -136454027 - MIR SINE MIR 0 262 53 1057 214 36 62 chr11 12329554 12329921 -136453551 + L1MC5 LINE L1 7555 7913 -48 1187 209 4 59 chr11 12329921 12330041 -136453431 + MER8 DNA MER2_type 1 101 -138 2229 114 3 0 chr11 12330041 12330347 -136453125 + AluSq SINE Alu 1 307 -6 1187 209 4 59 chr11 12330347 12330479 -136452993 + MER8 DNA MER2_type 101 239 0 1057 214 36 62 chr11 12330479 12330499 -136452973 + L1MC5 LINE L1 7913 7932 -29 598 244 114 15 chr11 12331266 12331467 -136452005 - MIR SINE MIR -31 231 11 668 263 83 0 chr11 12331663 12331868 -136451604 + MIR SINE MIR 28 249 -13 260 112 101 0 chr11 12332122 12332211 -136451261 + CT-rich Low_complexity Low_complexity 2 99 0 462 315 79 5 chr11 12332433 12332462 -136451010 - L1MC/D LINE L1 -2031 5777 5752 756 199 0 0 chr11 12332462 12332593 -136450879 - FLAM_A SINE Alu -2 131 1 462 315 79 5 chr11 12332593 12332766 -136450706 - L1MC/D LINE L1 -2056 5752 5560 284 192 0 0 chr11 12333340 12333397 -136450075 + L1MD3 LINE L1 7345 7488 -507 198 0 0 0 chr11 12333542 12333564 -136449908 + (T)n Simple_repeat Simple_repeat 1 22 0 2338 100 0 0 chr11 12334132 12334432 -136449040 - AluSx SINE Alu -12 300 1 355 143 0 0 chr11 12334569 12334618 -136448854 + Charlie3 DNA MER1_type 2658 2706 -4 * 884 103 63 0 chr11 12334616 12334742 -136448730 - MSTC LTR MaLR -294 134 1 4633 156 46 7 chr11 12334742 12335573 -136447899 + L1MC3 LINE L1 6122 6984 -801 225 108 15 154 chr11 12335587 12335652 -136447820 + L1MD3 LINE L1 6986 7041 -954 2003 130 20 3 chr11 12335784 12336076 -136447396 + AluJb SINE Alu 1 297 -15 397 188 0 0 chr11 12336294 12336363 -136447109 - MIR SINE MIR 0 262 194 310 352 34 17 chr11 12336387 12336620 -136446852 - L2 LINE L2 -471 2843 2607 749 340 53 34 chr11 12336944 12337415 -136446057 + L2 LINE L2 2377 2856 -458 307 316 123 0 chr11 12337386 12337541 -136445931 + L2 LINE L2 3077 3250 -63 * 922 235 5 14 chr11 12337550 12337784 -136445688 + MIR SINE MIR 21 249 -13 188 316 0 0 chr11 12337804 12337861 -136445611 + L2 LINE L2 3255 3311 -2 5964 171 33 13 chr11 12338869 12340493 -136442979 + L1MA9 LINE L1 4653 6312 0 380 305 86 25 chr11 12341150 12341347 -136442125 + MIR SINE MIR 9 217 -45 993 261 149 0 chr11 12341351 12341707 -136441765 - LTR33 LTR ERVL 0 521 113 458 206 48 74 chr11 12341819 12342008 -136441464 + MIR SINE MIR 68 251 -11 604 315 8 25 chr11 12342551 12342711 -136440761 - MIR SINE MIR -18 244 88 2499 85 8 30 chr11 12342711 12343074 -136440398 - THE1A LTR MaLR 0 355 1 604 315 8 25 chr11 12343074 12343154 -136440318 - MIR SINE MIR -174 88 8 688 148 35 0 chr11 12344394 12344509 -136438963 - Tigger1 DNA MER2_type 0 2418 2300 1136 205 5 0 chr11 12344520 12344720 -136438752 + AluJo SINE Alu 15 215 -97 371 293 24 0 chr11 12344825 12344948 -136438524 - L1ME LINE L1 -320 5801 5676 246 263 38 0 chr11 12345029 12345109 -136438363 + MARNA DNA Mariner 480 562 -24 797 158 8 15 chr11 12345157 12345290 -136438182 + FLAM_C SINE Alu 2 133 0 384 319 99 9 chr11 12346302 12346534 -136436938 - MIR SINE MIR -8 254 2 2103 198 90 67 chr11 12347391 12348002 -136435470 + MLT1E2 LTR MaLR 2 626 0 1050 296 69 36 chr11 12348286 12348780 -136434692 - L2 LINE L2 0 3313 2804 2090 107 53 7 chr11 12349868 12350167 -136433305 + AluSq SINE Alu 1 313 0 2097 114 105 12 chr11 12350257 12350325 -136433147 - THE1B LTR MaLR 0 364 304 2406 90 0 3 chr11 12350325 12350625 -136432847 + AluSg SINE Alu 1 299 -11 2097 114 105 12 chr11 12350625 12350889 -136432583 - THE1B LTR MaLR -60 304 1 649 321 50 34 chr11 12351246 12351664 -136431808 - LTR16C LTR ERVL -2 489 65 427 226 12 0 chr11 12351810 12351894 -136431578 - MLT1D LTR MaLR -420 85 1 595 259 196 49 chr11 12352065 12352572 -136430900 + L2 LINE L2 2709 3307 -6 809 153 33 0 chr11 12354136 12354286 -136429186 - MER63 DNA MER1_type -905 156 2 1780 159 24 10 chr11 12354385 12354681 -136428791 + AluJo SINE Alu 1 300 -12 183 366 0 0 chr11 12355051 12355122 -136428350 - MIR SINE MIR -1 261 191 212 244 0 0 chr11 12355303 12355344 -136428128 + polypyrimidine Low_complexity Low_complexity 1 41 0 21 0 0 0 chr11 12356515 12356536 -136426936 + AT_rich Low_complexity Low_complexity 1 21 0 345 231 140 21 chr11 12356745 12356888 -136426584 + L2 LINE L2 2539 2698 -616 447 235 27 91 chr11 12356908 12357129 -136426343 + MIR SINE MIR 21 227 -35 568 244 47 47 chr11 12357236 12357470 -136426002 + L2 LINE L2 2836 3069 -203 915 206 5 0 chr11 12357670 12357859 -136425613 - AluJb SINE Alu 0 312 123 323 271 28 9 chr11 12358174 12358281 -136425191 - MIR SINE MIR -98 164 56 311 365 87 5 chr11 12360920 12361139 -136422333 - L2 LINE L2 -6 3266 3030 2226 177 9 21 chr11 12361519 12361916 -136421556 + L1MC3 LINE L1 7367 7760 -25 515 105 53 0 chr11 12361916 12361992 -136421480 - MADE1 DNA Mariner 0 80 1 2226 177 9 21 chr11 12361992 12362018 -136421454 + L1MC3 LINE L1 7760 7785 0 739 239 81 34 chr11 12362110 12362344 -136421128 - MIR SINE MIR 0 262 18 1289 179 79 4 chr11 12363365 12363605 -136419867 - MLT1D LTR MaLR -1 504 247 1208 288 120 23 chr11 12363794 12364353 -136419119 + MLT1L LTR MaLR 1 613 -2 269 283 54 91 chr11 12364565 12364841 -136418631 - L2 LINE L2 0 3272 3007 2317 212 67 41 chr11 12365393 12366123 -136417349 + L1ME LINE L1 4015 4763 -1383 609 229 62 10 chr11 12366108 12366300 -136417172 + L1ME LINE L1 4974 5175 -971 * 607 98 0 0 chr11 12366301 12366383 -136417089 + AluSg SINE Alu 2 83 -227 662 278 199 19 chr11 12366942 12367370 -136416102 + LTR33 LTR ERVL 17 521 0 1350 156 70 12 chr11 12367816 12368072 -136415400 + AluJo SINE Alu 39 309 -3 2235 92 3 3 chr11 12369036 12369339 -136414133 + AluSc SINE Alu 1 303 -6 2306 68 3 0 chr11 12369346 12369638 -136413834 + AluY SINE Alu 2 294 -17 278 307 150 0 chr11 12370138 12370265 -136413207 - MIR SINE MIR -25 237 92 227 306 28 62 chr11 12370350 12370494 -136412978 + L3 LINE CR1 1436 1574 -3 294 314 75 17 chr11 12371001 12371240 -136412232 + L1ME LINE L1 5414 5666 -500 301 264 96 16 chr11 12372604 12372729 -136410743 + MIR SINE MIR 109 243 -19 252 0 0 0 chr11 12373842 12373870 -136409602 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1725 133 17 20 chr11 12373873 12374174 -136409298 - AluSx SINE Alu -11 301 2 1214 141 8 73 chr11 12374348 12374582 -136408890 + MER20 DNA MER1_type 1 219 0 525 180 71 156 chr11 12374669 12374882 -136408590 - MIR SINE MIR -7 255 57 300 340 19 9 chr11 12374932 12375038 -136408434 - MIR SINE MIR -50 212 106 216 325 33 50 chr11 12375074 12375194 -136408278 + L2 LINE L2 3134 3251 -21 1863 160 44 58 chr11 12375238 12375781 -136407691 - MLT2A2 LTR ERVL 0 554 1 27 81 0 0 chr11 12377657 12377719 -136405753 + AT_rich Low_complexity Low_complexity 1 62 0 2037 120 7 0 chr11 12377740 12378048 -136405424 - AluSx SINE Alu -2 310 1 1395 167 14 44 chr11 12378077 12378352 -136405120 - AluJb SINE Alu -12 300 34 225 239 106 14 chr11 12378466 12378608 -136404864 - L1M4 LINE L1 -1089 5057 4903 459 322 115 51 chr11 12378671 12379340 -136404132 - L1M4 LINE L1 -1299 4847 4006 801 182 32 82 chr11 12379340 12379560 -136403912 - MER3 DNA MER1_type 0 209 1 459 322 115 51 chr11 12379560 12379894 -136403578 - L1M4 LINE L1 -2140 4006 3695 202 314 29 49 chr11 12380125 12380227 -136403245 - L2 LINE L2 -5 3267 3168 584 226 109 105 chr11 12381776 12382015 -136401457 - MIR SINE MIR -2 260 21 458 267 42 8 chr11 12382165 12382285 -136401187 - L2 LINE L2 -1 3312 3189 271 157 39 0 chr11 12382625 12382676 -136400796 - MIR SINE MIR -92 170 118 1249 181 91 15 chr11 12382996 12383261 -136400211 - AluJo SINE Alu -14 298 14 241 272 111 0 chr11 12384449 12384530 -136398942 + MIR SINE MIR 32 121 -141 312 209 93 0 chr11 12384810 12384896 -136398576 - MER117 DNA MER1_type 0 197 104 261 266 56 18 chr11 12385200 12385323 -136398149 - MIR SINE MIR -51 157 33 314 272 99 91 chr11 12385796 12386138 -136397334 + LTR16A LTR ERVL 91 435 -15 247 215 114 13 chr11 12386235 12386314 -136397158 - MIR SINE MIR -92 116 30 572 257 37 37 chr11 12386363 12386550 -136396922 - MIR SINE MIR -56 206 20 1829 186 136 35 chr11 12387178 12387641 -136395831 + MER63 DNA MER1_type 548 1057 -4 206 81 27 0 chr11 12390714 12390751 -136392721 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 199 196 0 43 chr11 12390858 12390904 -136392568 - L3 LINE CR1 -2 1575 1532 292 300 119 31 chr11 12392902 12393010 -136390462 + MIR SINE MIR 13 141 -121 2047 100 0 23 chr11 12393010 12393347 -136390125 - AluY SINE Alu 0 311 1 292 300 119 31 chr11 12393347 12393398 -136390074 + MIR SINE MIR 141 186 -76 1507 79 5 5 chr11 12393789 12393991 -136389481 - AluY SINE Alu -109 202 1 1546 178 4 0 chr11 12394355 12394624 -136388848 - AluJo SINE Alu -37 275 6 387 259 80 18 chr11 12394791 12394903 -136388569 + L2 LINE L2 3149 3267 -5 964 243 162 65 chr11 12395042 12395553 -136387919 + MLT1L LTR MaLR 6 566 -49 378 237 134 0 chr11 12395626 12395723 -136387749 + L3 LINE CR1 1467 1576 -1 509 216 88 14 chr11 12395813 12395961 -136387511 + MIR SINE MIR 34 192 -70 198 281 124 51 chr11 12396541 12396699 -136386773 - MIR SINE MIR -55 207 23 2254 191 62 48 chr11 12398220 12398764 -136384708 - MLT2B3 LTR ERVL -2 552 1 1950 132 7 0 chr11 12398894 12399190 -136384282 - AluSx SINE Alu -14 298 1 226 266 215 27 chr11 12399223 12399369 -136384103 - MIR3 SINE MIR -77 185 13 403 289 20 60 chr11 12399901 12400050 -136383422 - MIR SINE MIR -73 189 47 1300 244 124 10 chr11 12400395 12400813 -136382659 + LTR33 LTR ERVL 14 479 -42 239 302 0 0 chr11 12400857 12400920 -136382552 - MIR SINE MIR -102 106 44 428 81 203 0 chr11 12402071 12402145 -136381327 + L1PA12 LINE L1 5863 5951 -217 753 216 105 0 chr11 12402158 12402320 -136381152 + MER3 DNA MER1_type 29 207 -2 1553 103 36 9 chr11 12402616 12402840 -136380632 + MER30 DNA MER1_type 1 230 0 514 261 38 13 chr11 12403514 12403671 -136379801 - MIR3 SINE MIR 0 208 48 265 351 92 17 chr11 12404725 12404899 -136378573 - MIR SINE MIR -24 238 52 762 148 0 22 chr11 12405060 12405195 -136378277 + AluJb SINE Alu 16 147 -165 574 139 178 0 chr11 12405186 12405287 -136378185 + AluSx SINE Alu 51 169 -143 * 1131 120 80 0 chr11 12405288 12405463 -136378009 + AluSg/x SINE Alu 110 298 -14 454 330 17 0 chr11 12405898 12406016 -136377456 + L2 LINE L2 3137 3256 -16 926 161 87 0 chr11 12406843 12407004 -136376468 + FAM SINE Alu 1 175 0 624 253 147 13 chr11 12407367 12407592 -136375880 + L1ME1 LINE L1 5864 6118 -48 2133 112 3 0 chr11 12407595 12407890 -136375582 - AluSx SINE Alu -16 296 1 691 219 0 0 chr11 12408097 12408225 -136375247 + FLAM_A SINE Alu 1 128 -5 2159 132 0 0 chr11 12408971 12409275 -136374197 + AluSx SINE Alu 1 304 -8 2282 248 69 23 chr11 12409667 12410321 -136373151 - MER21B LTR ERV1 -57 806 123 287 292 29 7 chr11 12410746 12410883 -136372589 - MER117 DNA MER1_type -49 148 9 520 211 41 14 chr11 12411557 12411704 -136371768 - HsTC2 DNA Tc2 -18 1880 1730 701 231 59 6 chr11 12411707 12411876 -136371596 - HsTC2 DNA Tc2 -1719 179 2 187 314 69 49 chr11 12412824 12412926 -136370546 - MIR SINE MIR -139 123 20 29 47 0 0 chr11 12413042 12413085 -136370387 + AT_rich Low_complexity Low_complexity 1 43 0 22 70 0 0 chr11 12413224 12413267 -136370205 + AT_rich Low_complexity Low_complexity 1 43 0 1931 113 10 10 chr11 12414123 12414415 -136369057 - AluSx SINE Alu -20 292 1 2120 113 10 0 chr11 12414651 12414951 -136368521 - AluSx SINE Alu -9 303 1 229 251 82 82 chr11 12415043 12415250 -136368222 - L1MC/D LINE L1 -1991 5817 5611 532 286 39 0 chr11 12415598 12415752 -136367720 - MIR SINE MIR -5 257 98 280 82 82 20 chr11 12415749 12415798 -136367674 + L2 LINE L2 3190 3241 -72 * 764 243 127 64 chr11 12415798 12416254 -136367218 - L1ME4a LINE L1 -101 6020 5536 2209 106 0 3 chr11 12416587 12416899 -136366573 + AluSx SINE Alu 1 311 -1 2057 130 7 0 chr11 12416906 12417202 -136366270 + AluSx SINE Alu 1 295 -17 377 241 8 0 chr11 12417285 12417418 -136366054 + (TA)n Simple_repeat Simple_repeat 1 134 0 292 256 12 109 chr11 12418800 12418982 -136364490 - MIR SINE MIR -61 147 18 1082 143 0 12 chr11 12419551 12419712 -136363760 + FRAM SINE Alu 1 159 -17 2039 165 104 20 chr11 12419797 12420190 -136363282 - MSTB LTR MaLR 0 426 1 204 111 0 0 chr11 12420732 12420768 -136362704 + (TG)n Simple_repeat Simple_repeat 2 37 0 1457 164 0 44 chr11 12421874 12422149 -136361323 + L1MC1 LINE L1 6066 6328 -5 453 221 96 0 chr11 12423657 12423761 -136359711 + MER94 DNA DNA 2 115 -19 249 287 56 28 chr11 12423781 12423889 -136359583 + L2 LINE L2 3141 3251 -21 255 125 0 0 chr11 12423929 12423969 -136359503 + (TGGA)n Simple_repeat Simple_repeat 1 40 0 258 56 0 0 chr11 12424064 12424100 -136359372 + (A)n Simple_repeat Simple_repeat 1 36 0 23 33 0 0 chr11 12425039 12425069 -136358403 + AT_rich Low_complexity Low_complexity 1 30 0 324 252 104 9 chr11 12425266 12425381 -136358091 + MIR SINE MIR 8 133 -129 2103 151 0 3 chr11 12425826 12426131 -136357341 - AluJb SINE Alu -8 304 1 1539 202 76 16 chr11 12426340 12426721 -136356751 + L1MC3 LINE L1 6698 7101 -684 292 224 71 24 chr11 12426726 12426811 -136356661 + MLT1F1 LTR MaLR 45 133 -434 1590 195 117 21 chr11 12426829 12427264 -136356208 + L1MC3 LINE L1 7308 7784 -1 2356 107 3 0 chr11 12427269 12427578 -136355894 + AluSp SINE Alu 1 310 -3 2172 142 0 0 chr11 12427581 12427890 -136355582 + AluSx SINE Alu 1 309 -3 702 254 83 0 chr11 12428441 12428634 -136354838 - MER3 DNA MER1_type 0 209 1 22 35 0 0 chr11 12428742 12428771 -136354701 + AT_rich Low_complexity Low_complexity 1 29 0 1901 265 70 80 chr11 12429272 12430060 -136353412 + L1MEd LINE L1 3 797 -5513 863 154 0 22 chr11 12430060 12430196 -136353276 + FLAM_C SINE Alu 1 133 0 1901 265 70 80 chr11 12430196 12430952 -136352520 + L1MEd LINE L1 797 1559 -4751 2461 81 0 0 chr11 12430952 12431250 -136352222 + AluY SINE Alu 1 298 -13 2125 125 26 3 chr11 12431259 12431562 -136351910 + AluSx SINE Alu 1 310 -2 1901 265 70 80 chr11 12431562 12431658 -136351814 + L1MEd LINE L1 1567 1657 -4653 323 302 70 51 chr11 12432130 12432184 -136351288 + L1MEd LINE L1 2172 2223 -3906 1829 159 0 20 chr11 12432184 12432486 -136350986 - AluJo SINE Alu -16 296 1 323 302 70 51 chr11 12432486 12432802 -136350670 + L1MEd LINE L1 2223 2549 -3580 280 254 162 51 chr11 12432803 12433000 -136350472 + L1MEd LINE L1 2571 2789 -3340 215 59 0 29 chr11 12435187 12435221 -136348251 + (GGAA)n Simple_repeat Simple_repeat 4 36 0 271 254 0 18 chr11 12435277 12435391 -136348081 + GA-rich Low_complexity Low_complexity 3 114 0 714 264 138 20 chr11 12435733 12436183 -136347289 + L1ME4a LINE L1 5617 6119 -2 237 268 20 22 chr11 12437212 12437324 -136346148 + MIR SINE MIR 33 142 -66 626 253 30 0 chr11 12437433 12437599 -136345873 - MIR SINE MIR -2 260 90 3998 158 27 4 chr11 12437700 12438401 -136345071 - L1MB2 LINE L1 -7 6164 5448 1034 242 25 0 chr11 12439240 12439480 -136343992 - MIR SINE MIR 0 262 17 1023 234 87 18 chr11 12440232 12440518 -136342954 - MLT1D LTR MaLR -195 310 5 192 321 0 0 chr11 12441591 12441644 -136341828 + L2 LINE L2 3247 3299 -14 981 171 25 10 chr11 12442261 12442460 -136341012 - MIR SINE MIR -56 206 5 255 148 19 0 chr11 12442806 12442860 -136340612 - L1ME4a LINE L1 0 6121 6067 294 284 153 11 chr11 12442933 12443116 -136340356 - L1ME4a LINE L1 -188 5933 5725 1766 155 86 10 chr11 12443260 12443550 -136339922 - AluJb SINE Alu 0 312 1 256 303 70 14 chr11 12443700 12443842 -136339630 - LTR16C LTR ERVL -66 425 276 204 222 0 0 chr11 12444634 12444670 -136338802 - L2 LINE L2 -23 3290 3255 278 226 200 26 chr11 12444909 12445024 -136338448 + L2 LINE L2 3138 3272 0 246 261 49 63 chr11 12445868 12446010 -136337462 - L2 LINE L2 -157 3115 2976 220 320 55 23 chr11 12446356 12446484 -136336988 + MIR SINE MIR 125 256 -6 1972 174 166 76 chr11 12446959 12447681 -136335791 + L1MC5 LINE L1 6688 7474 -487 671 191 93 118 chr11 12447685 12448084 -136335388 + L1MC5 LINE L1 7525 7913 -48 486 242 67 19 chr11 12449191 12449396 -136334076 - L1PA8A LINE L1 -630 5501 5291 253 302 47 33 chr11 12449570 12449768 -136333704 - L1M4 LINE L1 -991 5155 4950 2611 194 115 14 chr11 12449768 12450361 -136333111 - MER82 DNA MER2_type 0 653 1 253 302 47 33 chr11 12450361 12450437 -136333035 - L1M4 LINE L1 -1196 4950 4877 1473 155 41 4 chr11 12450456 12450701 -136332771 + AluJo SINE Alu 47 300 -12 354 309 95 8 chr11 12450703 12450946 -136332526 - L1M4 LINE L1 -1408 4738 4475 692 233 88 33 chr11 12451237 12451477 -136331995 - MIR SINE MIR -8 254 2 5040 161 28 4 chr11 12451509 12452353 -136331119 + MER6 DNA MER2_type 1 865 0 306 311 59 22 chr11 12453463 12453733 -136329739 + L1ME LINE L1 5290 5569 -593 646 266 57 9 chr11 12453800 12454029 -136329443 + MIR SINE MIR 8 247 -15 282 265 15 0 chr11 12454211 12454279 -136329193 - L2 LINE L2 -20 3293 3225 268 250 0 0 chr11 12454454 12454506 -136328966 + HsTC2 DNA Tc2 34 85 -1813 238 186 0 0 chr11 12454482 12454525 -136328947 + HsTC2 DNA Tc2 1853 1895 -3 * 245 271 14 14 chr11 12454845 12454915 -136328557 - MLT1K LTR MaLR 0 588 519 255 260 47 55 chr11 12457022 12457149 -136326323 - MARNA DNA Mariner -13 573 448 324 229 0 0 chr11 12457311 12457381 -136326091 - MIR SINE MIR -105 157 88 321 249 139 11 chr11 12457922 12458094 -136325378 - MIR3 SINE MIR -65 143 1 315 224 106 0 chr11 12459462 12459547 -136323925 - L1MC4 LINE L1 -32 8010 7917 441 218 50 0 chr11 12459548 12459649 -136323823 - L1MC4 LINE L1 -190 7852 7747 389 154 0 77 chr11 12459655 12459692 -136323780 + MER116 DNA Mariner 1 31 -49 2308 97 10 3 chr11 12459692 12460002 -136323470 - AluSq SINE Alu -1 312 1 389 154 0 77 chr11 12460002 12460042 -136323430 + MER116 DNA Mariner 31 72 -8 1225 242 81 28 chr11 12460044 12460441 -136323031 - L1MC4 LINE L1 -355 7687 7270 1957 146 0 10 chr11 12461060 12461355 -136322117 - AluJb SINE Alu -20 292 1 777 262 34 42 chr11 12461910 12462173 -136321299 - MIR SINE MIR 0 262 2 1769 157 53 10 chr11 12465883 12466182 -136317290 + AluJb SINE Alu 1 312 0 304 250 141 0 chr11 12466555 12466647 -136316825 + L1ME3 LINE L1 5465 5569 -2426 1623 177 58 131 chr11 12466781 12467300 -136316172 + MLT1D LTR MaLR 25 505 0 302 233 256 35 chr11 12467305 12467477 -136315995 + L1ME3 LINE L1 5619 5828 -334 2424 76 20 0 chr11 12467630 12467934 -136315538 - AluSq SINE Alu -3 310 1 416 268 155 44 chr11 12468006 12468323 -136315149 + L1ME3 LINE L1 5811 6162 0 22 0 0 0 chr11 12468311 12468333 -136315139 + AT_rich Low_complexity Low_complexity 1 22 0 * 299 183 83 17 chr11 12469339 12469399 -136314073 - MER91B DNA MER1_type -126 64 1 340 233 111 0 chr11 12469480 12469570 -136313902 - MIR SINE MIR -111 151 52 297 289 150 57 chr11 12470012 12470441 -136313031 - L2 LINE L2 -94 3219 2755 391 275 7 120 chr11 12470442 12470584 -136312888 - MER91C DNA MER1_type -11 129 4 982 169 10 34 chr11 12471234 12471441 -136312031 + L1PB3 LINE L1 5952 6153 -1 541 252 37 70 chr11 12471707 12471949 -136311523 - L1ME3A LINE L1 -10 6160 5927 333 207 0 0 chr11 12472484 12472571 -136310901 + GA-rich Low_complexity Low_complexity 2 88 0 500 280 48 36 chr11 12473489 12473657 -136309815 - MIR SINE MIR -5 257 88 275 111 111 0 chr11 12473694 12473748 -136309724 - L1ME3 LINE L1 -169 5993 5934 1806 152 93 60 chr11 12478759 12479121 -136304351 - Tigger2a DNA MER2_type -2274 434 54 2009 116 0 3 chr11 12479121 12479429 -136304043 + AluSg SINE Alu 1 307 0 1806 152 93 60 chr11 12479429 12479485 -136303987 - Tigger2a DNA MER2_type -2654 54 1 279 274 0 24 chr11 12581518 12581602 -136201870 - MIR SINE MIR -169 93 12 220 243 100 0 chr11 12582292 12582362 -136201110 - L2 LINE L2 -1 3312 3236 180 0 0 0 chr11 12582429 12582449 -136201023 + (A)n Simple_repeat Simple_repeat 1 20 0 2423 88 0 19 chr11 12583302 12583610 -136199862 + AluSq SINE Alu 1 302 -11 255 209 22 22 chr11 12583640 12583731 -136199741 + CT-rich Low_complexity Low_complexity 2 92 0 933 198 17 17 chr11 12583732 12583909 -136199563 - AluJb SINE Alu -18 294 118 252 326 0 0 chr11 12584534 12584631 -136198841 - MER5B DNA MER1_type 0 178 92 191 291 197 8 chr11 12584573 12584690 -136198782 + MER5A DNA MER1_type 50 188 -1 * 603 296 99 17 chr11 12584869 12585224 -136198248 + L2 LINE L2 2266 2649 -665 187 207 58 81 chr11 12585388 12585475 -136197997 + L2 LINE L2 2897 2981 -291 2017 111 25 0 chr11 12586847 12587152 -136196320 + AluSq SINE Alu 1 312 0 34 0 0 0 chr11 12587301 12587335 -136196137 + AT_rich Low_complexity Low_complexity 1 34 0 430 265 44 0 chr11 12588577 12588713 -136194759 + MIR SINE MIR 56 197 -65 478 298 69 23 chr11 12588808 12589026 -136194446 - MIR SINE MIR -27 235 8 379 161 23 35 chr11 12589086 12589173 -136194299 - L2 LINE L2 -27 3245 3160 1610 107 49 23 chr11 12589615 12589878 -136193594 - L1PA13 LINE L1 -3 6160 5891 3900 165 33 27 chr11 12590696 12591777 -136191695 + L1MD2 LINE L1 4992 5997 -245 612 277 15 15 chr11 12591900 12592102 -136191370 + MIR SINE MIR 42 243 -19 205 170 43 0 chr11 12592734 12592781 -136190691 - L2 LINE L2 -3 3269 3221 4522 218 78 26 chr11 12593612 12593873 -136189599 + L1MB8 LINE L1 4058 4304 -1880 2342 104 0 0 chr11 12593873 12594172 -136189300 - AluSq SINE Alu -11 302 4 4522 218 78 26 chr11 12594172 12595468 -136188004 + L1MB8 LINE L1 4304 5691 -493 710 157 0 0 chr11 12595488 12595634 -136187838 + FLAM_C SINE Alu 29 174 0 272 315 21 72 chr11 12595774 12596203 -136187269 + L1MB8 LINE L1 5679 6085 -93 2093 121 17 3 chr11 12597045 12597334 -136186138 - AluSx SINE Alu -19 293 1 605 211 50 39 chr11 12599098 12599278 -136184194 + MER53 DNA DNA 8 189 0 609 303 84 32 chr11 12600793 12601140 -136182332 - L3 LINE CR1 -467 1110 746 1706 143 110 10 chr11 12601730 12602038 -136181434 + MER7A DNA MER2_type 1 337 -9 1720 154 3 66 chr11 12602710 12603028 -136180444 - AluJb SINE Alu -14 298 1 315 0 0 0 chr11 12603218 12603253 -136180219 + (CA)n Simple_repeat Simple_repeat 2 36 0 2069 133 3 17 chr11 12604870 12605171 -136178301 - AluJb SINE Alu -15 297 1 192 216 0 0 chr11 12607409 12607446 -136176026 + MIR SINE MIR 118 154 -108 198 153 51 17 chr11 12607691 12607750 -136175722 + CT-rich Low_complexity Low_complexity 6 66 0 953 303 125 56 chr11 12609992 12610431 -136173041 + L1M4 LINE L1 2865 3272 -2874 342 0 0 0 chr11 12610431 12610469 -136173003 + (CA)n Simple_repeat Simple_repeat 2 39 0 953 303 125 56 chr11 12610469 12610635 -136172837 + L1M4 LINE L1 3272 3425 -2721 1528 135 39 4 chr11 12610635 12610895 -136172577 + L1MA8 LINE L1 6018 6286 -5 953 303 125 56 chr11 12610895 12611067 -136172405 + L1M4 LINE L1 3425 3584 -2562 1732 159 48 10 chr11 12611067 12611362 -136172110 + AluJb SINE Alu 5 310 -2 953 303 125 56 chr11 12611362 12611731 -136171741 + L1M4 LINE L1 3584 4093 -2053 317 295 106 39 chr11 12611859 12612350 -136171122 + L1M4 LINE L1 4402 4925 -1221 1850 153 7 19 chr11 12612497 12612804 -136170668 + AluJo SINE Alu 1 303 -9 183 42 0 0 chr11 12614084 12614108 -136169364 + (CCA)n Simple_repeat Simple_repeat 3 26 0 182 234 64 0 chr11 12614217 12614264 -136169208 + L2 LINE L2 3004 3053 -219 2451 94 0 0 chr11 12614645 12614952 -136168520 + AluSx SINE Alu 1 307 -5 2167 102 20 20 chr11 12615577 12615881 -136167591 - AluSx SINE Alu -8 304 1 1059 225 96 47 chr11 12615887 12616274 -136167198 - L1MA9 LINE L1 -25 6287 5882 476 248 50 21 chr11 12616751 12616892 -136166580 + MIR SINE MIR 42 186 -76 1996 125 3 3 chr11 12616951 12617239 -136166233 - AluSp SINE Alu -25 288 1 22 0 0 0 chr11 12617920 12617942 -136165530 + AT_rich Low_complexity Low_complexity 1 22 0 2433 84 0 0 chr11 12618574 12618873 -136164599 + AluSx SINE Alu 1 299 -13 804 291 79 88 chr11 12619194 12619957 -136163515 - HsTC2 DNA Tc2 -1025 873 121 2519 80 3 6 chr11 12619957 12620295 -136163177 - L1PA8A LINE L1 -1 6130 5794 804 291 79 88 chr11 12620295 12620415 -136163057 - HsTC2 DNA Tc2 -1777 121 1 368 139 38 6 chr11 12620662 12620737 -136162735 + Alu SINE Alu 235 295 -7 294 200 71 12 chr11 12621097 12621182 -136162290 + MER88 LTR ERVL 79 168 -296 * 1264 268 46 52 chr11 12621109 12621587 -136161885 - MER74B LTR ERVL -74 548 74 313 305 186 11 chr11 12621779 12621956 -136161516 + MIR SINE MIR 20 227 -35 215 330 153 8 chr11 12624357 12624475 -136158997 - MIR SINE MIR -108 154 20 261 246 73 64 chr11 12627359 12627469 -136156003 - MIR SINE MIR -66 142 32 425 235 11 158 chr11 12627903 12628163 -136155309 - MIR SINE MIR -28 234 13 944 262 141 93 chr11 12628770 12629572 -136153900 - HAL1 LINE L1 -68 2439 1600 260 293 80 0 chr11 12629862 12629937 -136153535 + L2 LINE L2 3197 3277 -36 407 269 35 55 chr11 12630949 12631094 -136152378 + MIR3 SINE MIR 3 144 -64 2295 95 3 0 chr11 12631460 12631755 -136151717 - AluSx SINE Alu -16 296 1 264 297 55 47 chr11 12631757 12631885 -136151587 - MIR SINE MIR -16 246 118 304 306 16 25 chr11 12633064 12633133 -136150339 + MER103 DNA DNA 2 71 -95 1511 197 14 21 chr11 12633133 12633422 -136150050 - AluJo SINE Alu -25 287 1 304 306 16 25 chr11 12633422 12633473 -136149999 + MER103 DNA DNA 71 121 -45 237 284 0 30 chr11 12633556 12633623 -136149849 - MIR SINE MIR -70 192 128 516 251 72 6 chr11 12634055 12634222 -136149250 - MER5B DNA MER1_type 0 178 1 281 209 45 0 chr11 12636137 12636204 -136147268 - MIR SINE MIR -14 248 179 1942 152 10 0 chr11 12636596 12636886 -136146586 + AluJb SINE Alu 3 295 -17 870 243 42 11 chr11 12637050 12637239 -136146233 + Charlie1a DNA MER1_type 3 197 -1258 911 193 61 10 chr11 12637309 12637506 -136145966 + Charlie1a DNA MER1_type 553 759 -696 832 174 0 19 chr11 12637506 12637661 -136145811 + Charlie1a DNA MER1_type 879 1030 -425 746 164 106 34 chr11 12637664 12637872 -136145600 + Charlie1a DNA MER1_type 1186 1408 -47 387 86 0 35 chr11 12638009 12638067 -136145405 + Charlie1a DNA MER1_type 1399 1454 -1 276 221 17 0 chr11 12638827 12638906 -136144566 + MLT1D LTR MaLR 421 626 0 21 0 0 0 chr11 12638941 12638962 -136144510 + AT_rich Low_complexity Low_complexity 1 21 0 401 123 0 0 chr11 12638962 12639019 -136144453 - FLAM_A SINE Alu -25 117 61 206 220 0 0 chr11 12639732 12639791 -136143681 + (TA)n Simple_repeat Simple_repeat 2 60 0 1660 228 102 27 chr11 12640032 12640554 -136142918 + L1ME3A LINE L1 5607 6167 -3 573 226 5 35 chr11 12640713 12640911 -136142561 + MER97a DNA MER1_type? 2 230 -823 1721 145 17 47 chr11 12640911 12641208 -136142264 - AluJo SINE Alu -10 302 15 573 226 5 35 chr11 12641208 12641233 -136142239 + MER97a DNA MER1_type? 230 254 -799 619 260 56 20 chr11 12641354 12641550 -136141922 + MER97b DNA MER1_type? 423 625 -428 309 215 165 0 chr11 12641550 12641629 -136141843 + MER97c DNA MER1_type? 999 1090 0 728 181 17 0 chr11 12641941 12642057 -136141415 - FLAM_A SINE Alu -15 118 1 245 298 48 0 chr11 12642256 12642340 -136141132 + L1ME LINE L1 5732 5819 -302 2317 90 7 10 chr11 12642678 12642979 -136140493 + AluSp SINE Alu 2 301 -12 2566 11 0 0 chr11 12643610 12643885 -136139587 - AluYa5 SINE Alu -3 308 34 1839 157 17 0 chr11 12644078 12644372 -136139100 + AluSx SINE Alu 10 308 -4 226 279 38 13 chr11 12644416 12644495 -136138977 + L2 LINE L2 2550 2630 -684 242 356 25 8 chr11 12644875 12644993 -136138479 + L2 LINE L2 3139 3258 -14 776 120 30 30 chr11 12645019 12645152 -136138320 - MSTD LTR MaLR 0 396 264 530 221 15 8 chr11 12645205 12645336 -136138136 - MSTD LTR MaLR -264 132 1 200 135 0 0 chr11 12645796 12645833 -136137639 + L2 LINE L2 3274 3310 -3 1350 142 125 83 chr11 12646586 12646946 -136136526 - THE1C LTR MaLR 0 375 1 189 296 12 37 chr11 12647979 12648060 -136135412 - L2 LINE L2 -1015 2299 2221 198 281 61 12 chr11 12649799 12649881 -136133591 + L2 LINE L2 3026 3111 -161 233 209 47 0 chr11 12650531 12650574 -136132898 + tRNA-Pro-CCT tRNA tRNA 20 64 -11 21 0 0 0 chr11 12651988 12652009 -136131463 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 12652360 12652388 -136131084 + AT_rich Low_complexity Low_complexity 1 28 0 324 127 0 0 chr11 12652588 12652643 -136130829 + (CA)n Simple_repeat Simple_repeat 2 56 0 387 0 0 0 chr11 12653064 12653107 -136130365 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 189 0 0 0 chr11 12655718 12655739 -136127733 + (A)n Simple_repeat Simple_repeat 1 21 0 2306 82 4 0 chr11 12655739 12656020 -136127452 - AluSp SINE Alu -31 282 1 291 352 9 9 chr11 12656783 12656891 -136126581 + L2 LINE L2 2989 3096 -176 254 227 61 0 chr11 12657012 12657078 -136126394 + L2 LINE L2 3168 3237 -35 226 274 155 12 chr11 12657424 12657592 -136125880 - L3 LINE CR1 -156 1421 1230 378 234 0 27 chr11 12658880 12658997 -136124475 + MIR SINE MIR 25 136 -72 2156 109 6 16 chr11 12659342 12659655 -136123817 - AluSx SINE Alu -2 310 1 193 294 29 15 chr11 12660279 12660347 -136123125 + MIR SINE MIR 52 120 -142 2101 147 0 0 chr11 12660949 12661235 -136122237 + AluSx SINE Alu 1 286 -26 383 131 82 0 chr11 12661589 12661650 -136121822 - Charlie3 DNA MER1_type -4 2706 2641 2099 142 0 7 chr11 12661992 12662301 -136121171 + AluJb SINE Alu 1 307 -5 236 278 31 31 chr11 12663146 12663253 -136120219 + MIR SINE MIR 1 108 -100 2237 117 0 0 chr11 12663497 12663787 -136119685 - AluSq SINE Alu -23 290 1 180 232 111 20 chr11 12663873 12663972 -136119500 + MIR SINE MIR 127 234 -28 2549 64 3 6 chr11 12664619 12664931 -136118541 + AluY SINE Alu 1 311 0 768 181 0 0 chr11 12665222 12665349 -136118123 + FLAM_A SINE Alu 4 130 -3 723 258 26 5 chr11 12665368 12665558 -136117914 + L2 LINE L2 3116 3309 -4 326 323 84 47 chr11 12665873 12666170 -136117302 + L2 LINE L2 2958 3265 -7 2497 57 0 7 chr11 12666479 12666779 -136116693 + AluY SINE Alu 3 300 -11 330 171 110 0 chr11 12666871 12666953 -136116519 + MIR SINE MIR 81 171 -91 206 338 21 7 chr11 12667195 12667337 -136116135 - L3b LINE CR1 -295 1288 1145 2212 70 63 3 chr11 12667998 12668282 -136115190 - AluSc SINE Alu -8 301 1 559 295 95 17 chr11 12668352 12668593 -136114879 + MIR SINE MIR 3 262 0 26 0 0 0 chr11 12669596 12669622 -136113850 + GC_rich Low_complexity Low_complexity 1 26 0 369 0 0 0 chr11 12669703 12669744 -136113728 + (A)n Simple_repeat Simple_repeat 1 41 0 782 188 0 0 chr11 12669744 12669882 -136113590 + AluSc SINE Alu 119 256 -53 2488 164 14 53 chr11 12669898 12670411 -136113061 + L1MB8 LINE L1 5681 6173 -5 324 0 0 0 chr11 12670855 12670891 -136112581 + (TG)n Simple_repeat Simple_repeat 1 36 0 207 0 0 0 chr11 12670948 12670971 -136112501 + (T)n Simple_repeat Simple_repeat 1 23 0 193 281 0 83 chr11 12671356 12671452 -136112020 - MIR SINE MIR -167 95 8 261 155 84 14 chr11 12672998 12673069 -136110403 - MIR3 SINE MIR -22 186 111 480 252 76 0 chr11 12673209 12673328 -136110144 + MER94 DNA DNA 6 133 -1 521 200 0 0 chr11 12674207 12674302 -136109170 + MER53 DNA DNA 1 95 -94 729 270 242 10 chr11 12674388 12674912 -136108560 - L2 LINE L2 -2 3311 2655 277 105 0 0 chr11 12675683 12675721 -136107751 + U5 snRNA snRNA 1 38 -78 1116 147 0 18 chr11 12675721 12675891 -136107581 - AluSq SINE Alu -13 300 134 2215 90 23 3 chr11 12675891 12676190 -136107282 - AluSx SINE Alu -7 305 1 760 158 0 0 chr11 12676688 12676808 -136106664 - FLAM_C SINE Alu -13 120 1 273 244 84 25 chr11 12676961 12677080 -136106392 + MIR SINE MIR 128 253 -9 26 0 0 0 chr11 12677106 12677132 -136106340 + AT_rich Low_complexity Low_complexity 1 26 0 206 222 63 0 chr11 12678058 12678121 -136105351 + MIR SINE MIR 65 131 -77 1900 166 73 5 chr11 12678449 12678824 -136104648 + L1M4 LINE L1 5332 5714 -464 242 237 0 53 chr11 12680059 12680135 -136103337 + A-rich Low_complexity Low_complexity 5 76 0 208 282 164 9 chr11 12680374 12680484 -136102988 + MIR SINE MIR 82 208 -54 1584 173 16 38 chr11 12680533 12680846 -136102626 + AluJo SINE Alu 1 306 -6 26 0 0 0 chr11 12680880 12680906 -136102566 + AT_rich Low_complexity Low_complexity 1 26 0 328 285 163 31 chr11 12680908 12681227 -136102245 - L1MC/D LINE L1 -2036 5772 5412 1541 239 51 20 chr11 12682746 12683198 -136100274 - MLT1C LTR MaLR 0 467 2 256 296 41 10 chr11 12683221 12683319 -136100153 - MIR SINE MIR -142 120 20 207 170 132 0 chr11 12683325 12683378 -136100094 - MER5A DNA MER1_type -11 178 119 384 190 0 60 chr11 12683392 12683492 -136099980 + MER5A DNA MER1_type 4 97 -92 215 148 19 37 chr11 12683489 12683543 -136099929 - MER5B DNA MER1_type -123 55 3 * 353 260 50 83 chr11 12683560 12683741 -136099731 + MER5B DNA MER1_type 4 178 0 276 196 0 0 chr11 12684203 12684249 -136099223 + Alu SINE Alu 1 46 -257 2158 112 13 10 chr11 12684514 12684818 -136098654 + AluSx SINE Alu 2 306 -6 405 277 77 32 chr11 12684869 12684886 -136098586 - MIR SINE MIR -32 230 215 1829 177 0 13 chr11 12684886 12685196 -136098276 - AluJo SINE Alu -6 306 1 405 277 77 32 chr11 12685196 12685398 -136098074 - MIR SINE MIR -47 215 1 255 281 66 33 chr11 12685578 12685699 -136097773 - L2 LINE L2 -7 3306 3182 763 167 8 0 chr11 12686038 12686170 -136097302 + FLAM_C SINE Alu 1 133 0 265 240 53 40 chr11 12686781 12686856 -136096616 - L2 LINE L2 -44 3228 3153 2198 99 13 7 chr11 12688598 12688900 -136094572 + AluSg1 SINE Alu 1 304 -5 234 0 0 0 chr11 12691767 12691793 -136091679 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 182 250 47 16 chr11 12691991 12692055 -136091417 + MIR SINE MIR 66 131 -131 2651 58 0 0 chr11 12693586 12693894 -136089578 - AluY SINE Alu -3 308 1 180 343 9 29 chr11 12693915 12694020 -136089452 + L2 LINE L2 2623 2725 -589 2190 139 0 0 chr11 12694421 12694731 -136088741 - AluSx SINE Alu -2 310 1 224 341 8 16 chr11 12695073 12695196 -136088276 - MIR3 SINE MIR -2 206 85 2076 102 33 13 chr11 12695763 12696068 -136087404 + AluSq SINE Alu 1 311 -2 465 138 8 41 chr11 12696068 12696191 -136087281 + GA-rich Low_complexity Low_complexity 4 122 0 1122 159 30 52 chr11 12696191 12696423 -136087049 + MLT1B LTR MaLR 164 390 0 24 0 0 0 chr11 12696565 12696589 -136086883 + AT_rich Low_complexity Low_complexity 1 24 0 400 226 0 0 chr11 12697165 12697249 -136086223 + L1MA9 LINE L1 6044 6127 -185 2456 74 0 0 chr11 12697423 12697721 -136085751 - AluY SINE Alu -13 298 1 1585 153 59 7 chr11 12697739 12698027 -136085445 - L1MA7 LINE L1 0 6291 5989 1481 113 132 39 chr11 12698242 12698499 -136084973 + AluSx SINE Alu 3 283 -29 180 0 0 0 chr11 12698499 12698519 -136084953 + (CCAA)n Simple_repeat Simple_repeat 2 21 0 906 162 116 95 chr11 12698964 12699248 -136084224 + AluJo SINE Alu 23 312 0 475 320 82 18 chr11 12699272 12699491 -136083981 - MIR SINE MIR -12 250 18 1207 193 0 19 chr11 12702062 12702275 -136081197 - AluSc SINE Alu -14 295 87 222 208 0 0 chr11 12703068 12703116 -136080356 + (TG)n Simple_repeat Simple_repeat 1 48 0 208 148 37 19 chr11 12703139 12703193 -136080279 + (TA)n Simple_repeat Simple_repeat 1 55 0 388 266 13 65 chr11 12705665 12705819 -136077653 - MIR SINE MIR -33 229 84 210 272 139 44 chr11 12706050 12706230 -136077242 - MIR SINE MIR -46 216 20 181 279 81 23 chr11 12706751 12706837 -136076635 + MIR SINE MIR 36 126 -136 283 273 61 20 chr11 12706866 12706965 -136076507 - L2 LINE L2 -34 3238 3136 236 271 29 0 chr11 12707403 12707473 -136075999 + L2 LINE L2 3242 3313 0 433 325 121 5 chr11 12707951 12708157 -136075315 - MIR SINE MIR -14 248 19 211 348 65 13 chr11 12710181 12710336 -136073136 - MIR SINE MIR -12 250 88 259 346 112 39 chr11 12710820 12710999 -136072473 + L3 LINE CR1 326 517 -1060 209 262 82 0 chr11 12711233 12711294 -136072178 - L2 LINE L2 -33 3280 3215 270 256 165 33 chr11 12711498 12711619 -136071853 + L3 LINE CR1 1345 1481 -96 1006 298 59 15 chr11 12712514 12713111 -136070361 - MER115 DNA AcHobo 0 693 3 676 248 86 22 chr11 12713891 12714113 -136069359 + MIR SINE MIR 25 260 -2 358 221 74 0 chr11 12715306 12715401 -136068071 + MIR SINE MIR 104 205 -57 2258 119 0 0 chr11 12716461 12716764 -136066708 - AluSg SINE Alu -3 307 5 225 232 0 36 chr11 12717884 12717940 -136065532 + MLT1K LTR MaLR 490 543 -45 213 39 0 0 chr11 12718335 12718361 -136065111 + (TGGGGG)n Simple_repeat Simple_repeat 4 29 0 184 250 45 0 chr11 12720103 12720147 -136063325 + MIR SINE MIR 79 124 -138 580 75 0 38 chr11 12721267 12721373 -136062099 + (TG)n Simple_repeat Simple_repeat 1 102 0 276 200 0 0 chr11 12721729 12721789 -136061683 + CT-rich Low_complexity Low_complexity 1 60 0 236 364 53 23 chr11 12723202 12723334 -136060138 - L2 LINE L2 -19 3253 3118 2489 57 3 10 chr11 12725939 12726240 -136057232 - AluY SINE Alu -12 299 1 184 365 0 0 chr11 12727766 12727829 -136055643 + MIR SINE MIR 32 94 -114 210 257 9 73 chr11 12728334 12728443 -136055029 + CT-rich Low_complexity Low_complexity 2 103 0 2480 64 3 0 chr11 12728445 12728742 -136054730 - AluY SINE Alu -4 307 10 21 0 0 0 chr11 12729445 12729466 -136054006 + AT_rich Low_complexity Low_complexity 1 21 0 291 203 43 0 chr11 12729754 12729823 -136053649 + MIR SINE MIR 71 142 -120 2996 212 130 42 chr11 12731667 12732631 -136050841 + L1M4 LINE L1 4067 5114 -1032 564 296 28 24 chr11 12733045 12733258 -136050214 + MIR SINE MIR 23 236 -26 354 237 32 121 chr11 12733900 12734090 -136049382 - MIR SINE MIR -62 200 28 255 172 195 35 chr11 12836421 12836508 -135946964 - MER103 DNA DNA -50 116 16 1336 249 23 20 chr11 12836681 12837023 -135946449 + L1MDa LINE L1 3 345 -6195 728 235 10 73 chr11 12837026 12837230 -135946242 - AluJb SINE Alu -13 299 109 1791 165 0 14 chr11 12837487 12837784 -135945688 + AluJb SINE Alu 3 295 -17 24 0 0 0 chr11 12837784 12837808 -135945664 + AT_rich Low_complexity Low_complexity 1 24 0 294 236 104 42 chr11 12837950 12838094 -135945378 - L1ME4a LINE L1 -1 6120 5968 2063 34 0 0 chr11 12838492 12838726 -135944746 - L1PA2 LINE L1 0 6155 5922 1928 154 0 3 chr11 12839081 12839379 -135944093 - AluSx SINE Alu -15 297 1 329 289 8 31 chr11 12839581 12839709 -135943763 + (TATATG)n Simple_repeat Simple_repeat 2 126 0 421 326 168 24 chr11 12840813 12841724 -135941748 - L2 LINE L2 -212 3060 1992 440 261 24 101 chr11 12841968 12842175 -135941297 + MIR SINE MIR 48 238 -24 511 251 30 36 chr11 12842199 12842366 -135941106 - MIR SINE MIR -37 225 60 321 197 53 0 chr11 12842376 12842452 -135941020 + MIR SINE MIR 126 205 -57 2118 90 3 3 chr11 12842554 12842864 -135940608 + L1P LINE L1 3126 3435 -2711 1748 278 66 30 chr11 12843005 12843827 -135939645 - L2 LINE L2 -90 3223 2375 1164 286 35 21 chr11 12843880 12844254 -135939218 + LTR16C LTR ERVL 24 402 -89 426 268 95 12 chr11 12844493 12844661 -135938811 - LTR16C LTR ERVL -3 488 307 2251 85 3 3 chr11 12844720 12845002 -135938470 + AluSg SINE Alu 6 287 -23 325 220 110 10 chr11 12845016 12845116 -135938356 + L1MC4 LINE L1 7933 8042 0 2005 143 0 0 chr11 12845130 12845410 -135938062 + AluSx SINE Alu 1 280 -32 351 0 0 0 chr11 12845412 12845451 -135938021 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 956 271 43 15 chr11 12845461 12845789 -135937683 + L1PBa LINE L1 6 342 -6521 3818 144 14 29 chr11 12845929 12846741 -135936731 - L1MA9 LINE L1 -387 5925 5126 375 216 129 9 chr11 12846996 12847112 -135936360 - MIR SINE MIR -12 250 121 182 274 168 0 chr11 12847315 12847428 -135936044 + L2 LINE L2 3136 3267 -5 254 301 163 24 chr11 12848073 12848196 -135935276 + MIR SINE MIR 13 152 -110 917 197 77 19 chr11 12848418 12848626 -135934846 + MIR SINE MIR 2 221 -41 481 284 105 12 chr11 12849884 12850046 -135933426 + MIR SINE MIR 3 179 -83 627 262 62 8 chr11 12851021 12851211 -135932261 + MIR SINE MIR 38 238 -24 23 0 0 0 chr11 12851480 12851503 -135931969 + AT_rich Low_complexity Low_complexity 1 23 0 344 305 123 32 chr11 12851648 12851835 -135931637 + MIR SINE MIR 53 256 -6 8624 129 23 3 chr11 12851863 12853133 -135930339 - HSMAR2 DNA Mariner -3 1299 5 483 268 16 0 chr11 12853250 12853287 -135930185 - L1MA10 LINE L1 -44 6290 6254 257 319 45 38 chr11 12853287 12853444 -135930028 - L1MD2 LINE L1 -246 6113 5956 508 192 39 0 chr11 12853453 12853557 -135929915 - L1M4 LINE L1 -835 5311 5204 * 2231 243 88 26 chr11 12853556 12853704 -135929768 - L1MC3 LINE L1 -380 7405 7268 2022 209 8 3 chr11 12853704 12854067 -135929405 - MLT1A1 LTR MaLR 0 365 1 2231 243 88 26 chr11 12854067 12854269 -135929203 - L1MC3 LINE L1 -517 7268 7080 189 107 0 0 chr11 12854269 12854297 -135929175 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 2231 243 88 26 chr11 12854297 12854637 -135928835 - L1MC3 LINE L1 -705 7080 6671 268 188 13 0 chr11 12854723 12854782 -135928690 + MER5A DNA MER1_type 2 61 -128 287 212 158 6 chr11 12854982 12855147 -135928325 + L1MC/D LINE L1 5386 5576 -594 1963 174 68 3 chr11 12855311 12855650 -135927822 + MLT1A1 LTR MaLR 1 361 -4 248 307 68 28 chr11 12855734 12855910 -135927562 + L1M4 LINE L1 4525 4707 -1439 303 180 0 0 chr11 12855933 12855983 -135927489 + (CCCTAA)n Simple_repeat Simple_repeat 3 52 0 242 247 32 54 chr11 12856035 12856128 -135927344 + L1M4 LINE L1 4910 5000 -1146 1470 157 92 29 chr11 12856164 12856445 -135927027 - AluJb SINE Alu -9 303 5 1628 197 0 0 chr11 12857753 12858037 -135925435 - AluJb SINE Alu -8 304 21 1758 172 3 27 chr11 12858690 12858987 -135924485 + AluJo SINE Alu 1 290 -22 418 313 28 17 chr11 12860519 12860713 -135922759 - MER5B DNA MER1_type 0 178 1 228 323 53 41 chr11 12861453 12861575 -135921897 - MIR SINE MIR -68 140 43 246 176 0 88 chr11 12862004 12862095 -135921377 + CT-rich Low_complexity Low_complexity 5 87 0 237 162 0 0 chr11 12863831 12863868 -135919604 - LTR16C LTR ERVL -2 489 453 602 281 90 34 chr11 12863927 12864194 -135919278 - LTR16C LTR ERVL -167 324 43 562 198 60 126 chr11 12866689 12866871 -135916601 + MER5B DNA MER1_type 3 172 -6 552 152 107 9 chr11 12867009 12867121 -135916351 - L2 LINE L2 0 3313 3191 303 248 0 0 chr11 12867491 12867596 -135915876 + (ATG)n Simple_repeat Simple_repeat 2 106 0 22230 65 9 5 chr11 12869906 12873602 -135909870 + L1PA7 LINE L1 2447 6148 -6 1188 203 63 3 chr11 12873611 12873914 -135909558 - MER33 DNA MER1_type -14 310 1 659 277 69 36 chr11 12873927 12874230 -135909242 - L1ME LINE L1 -330 5791 5479 617 273 105 72 chr11 12874249 12874310 -135909162 + HAL1 LINE L1 790 848 -1659 1684 276 33 14 chr11 12874310 12874821 -135908651 + LTR33 LTR ERVL 1 521 0 617 273 105 72 chr11 12874821 12875480 -135907992 + HAL1 LINE L1 848 1534 -973 348 375 46 18 chr11 12875481 12875886 -135907586 + L2 LINE L2 2652 3074 -198 193 320 195 8 chr11 12875934 12876062 -135907410 - L2 LINE L2 -15 3257 3106 351 65 0 0 chr11 12876716 12876762 -135906710 + (T)n Simple_repeat Simple_repeat 1 46 0 4604 223 34 20 chr11 12876875 12877505 -135905967 + L1M4 LINE L1 3797 4453 -1693 2011 145 0 10 chr11 12877505 12877816 -135905656 + AluSq SINE Alu 1 308 -5 4604 223 34 20 chr11 12877816 12878355 -135905117 + L1M4 LINE L1 4453 4983 -1163 569 269 20 30 chr11 12878545 12878742 -135904730 + MIR SINE MIR 43 237 -25 220 68 23 23 chr11 12879659 12879703 -135903769 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 1129 103 0 0 chr11 12879703 12879849 -135903623 - AluSg/x SINE Alu -32 280 135 306 87 0 0 chr11 12881401 12881447 -135902025 + (GA)n Simple_repeat Simple_repeat 1 46 0 3100 163 11 15 chr11 12881956 12882489 -135900983 + LTR26B LTR ERV1 1 531 0 204 40 0 0 chr11 12882634 12882659 -135900813 + (CAGT)n Simple_repeat Simple_repeat 4 28 0 345 330 0 0 chr11 12882662 12882765 -135900707 - L2 LINE L2 -10 3303 3201 488 348 48 48 chr11 12882816 12883345 -135900127 - L2 LINE L2 -267 3005 2467 965 188 6 11 chr11 12883410 12883586 -135899886 - MLT1C LTR MaLR 0 467 293 206 335 5 61 chr11 12883640 12883837 -135899635 - L2 LINE L2 -912 2402 2217 2882 3 0 0 chr11 12885423 12885725 -135897747 - AluYa5 SINE Alu -7 304 3 2235 119 0 0 chr11 12886310 12886605 -135896867 - AluSq SINE Alu -18 295 1 1531 165 98 32 chr11 12887098 12887305 -135896167 - MLT1C LTR MaLR -10 616 424 180 97 0 0 chr11 12887305 12887336 -135896136 + (TG)n Simple_repeat Simple_repeat 2 32 0 1531 165 98 32 chr11 12887336 12887514 -135895958 - MLT1C LTR MaLR -202 424 2 277 114 0 23 chr11 12887610 12887654 -135895818 + MER39 LTR ERV1 1 43 -664 * 974 164 0 6 chr11 12887646 12887805 -135895667 + MER39 LTR ERV1 549 706 -1 9989 102 5 6 chr11 12888554 12889952 -135893520 - Tigger1 DNA MER2_type -320 2098 703 371 155 0 0 chr11 12890236 12890294 -135893178 - L1MA9 LINE L1 -5 6307 6250 331 244 24 41 chr11 12890535 12890658 -135892814 + MIR3 SINE MIR 36 156 -52 281 272 116 10 chr11 12891499 12891691 -135891781 + MIR SINE MIR 11 225 -37 203 184 0 0 chr11 12891719 12891757 -135891715 + (TTA)n Simple_repeat Simple_repeat 2 39 0 1225 177 20 19 chr11 12891892 12892827 -135890645 - L1MB8 LINE L1 0 6178 5092 328 239 15 30 chr11 12893314 12893448 -135890024 + L2 LINE L2 2930 3061 -211 453 211 112 33 chr11 12894673 12894825 -135888647 - L2 LINE L2 -42 3271 3108 201 299 117 22 chr11 12894971 12895108 -135888364 - L2 LINE L2 -224 3089 2940 183 273 0 0 chr11 12895801 12895856 -135887616 + L2 LINE L2 3210 3264 -8 591 241 143 16 chr11 12895978 12896223 -135887249 - L1ME4a LINE L1 -26 6095 5820 318 318 128 10 chr11 12896246 12896535 -135886937 - L2 LINE L2 -629 2685 2363 740 255 75 36 chr11 12896813 12897091 -135886381 - L2 LINE L2 -6 3307 3019 319 252 86 60 chr11 12897096 12897247 -135886225 - L2 LINE L2 -3135 179 25 22 0 0 0 chr11 12897889 12897911 -135885561 + AT_rich Low_complexity Low_complexity 1 22 0 810 217 122 30 chr11 12898139 12898369 -135885103 + MER112 DNA MER1_type 8 258 -2 265 345 18 9 chr11 12898476 12898586 -135884886 + L2 LINE L2 3197 3307 -6 488 250 55 6 chr11 12898990 12899009 -135884463 - L1MA10 LINE L1 0 6334 6316 1514 238 133 66 chr11 12899009 12899648 -135883824 - L1ME2 LINE L1 -11 6153 5447 1913 145 16 10 chr11 12899648 12899952 -135883520 - AluSx SINE Alu -6 306 1 1514 238 133 66 chr11 12899952 12900127 -135883345 - L1ME2 LINE L1 -717 5447 5285 489 174 29 6 chr11 12900183 12900355 -135883117 + (TA)n Simple_repeat Simple_repeat 2 177 0 350 74 19 0 chr11 12900355 12900409 -135883063 - L1ME2 LINE L1 -904 5242 5188 1437 29 0 6 chr11 12900415 12900586 -135882886 - L1PA5 LINE L1 0 6154 5985 1739 177 0 32 chr11 12900767 12901107 -135882365 + AluJb SINE Alu 1 330 0 204 284 49 20 chr11 12901224 12901326 -135882146 - MIR SINE MIR -6 256 152 1640 125 24 52 chr11 12901401 12901729 -135881743 + MER33 DNA MER1_type 6 324 0 1168 254 98 33 chr11 12901875 12902361 -135881111 + MLT1H LTR MaLR 18 545 -4 2847 13 0 3 chr11 12902493 12902805 -135880667 + AluYa5 SINE Alu 1 311 0 264 137 0 0 chr11 12903978 12904029 -135879443 + (A)n Simple_repeat Simple_repeat 1 51 0 395 229 137 0 chr11 12904182 12904313 -135879159 - MIR SINE MIR -37 225 77 254 246 8 102 chr11 12904373 12904491 -135878981 + MER34 LTR ERV1 41 147 -395 1576 193 20 7 chr11 12904806 12905107 -135878365 + AluJb SINE Alu 1 305 -7 240 170 75 0 chr11 12905117 12905170 -135878302 + Alu SINE Alu 246 302 0 854 119 33 12 chr11 12905175 12905431 -135878041 + GA-rich Low_complexity Low_complexity 1 261 0 380 292 50 0 chr11 12906865 12906985 -135876487 - L2 LINE L2 0 3272 3147 411 290 51 18 chr11 12907229 12907446 -135876026 - L2 LINE L2 -501 2813 2590 362 253 11 11 chr11 12907924 12908011 -135875461 + MIR SINE MIR 21 107 -155 336 317 41 24 chr11 12908151 12908274 -135875198 + L2 LINE L2 3144 3268 -4 986 323 100 29 chr11 12908477 12909567 -135873905 + L2 LINE L2 2147 3309 -4 2112 215 16 49 chr11 12909914 12910520 -135872952 + LTR27 LTR ERV1 3 1232 -141 2223 124 0 7 chr11 12911134 12911441 -135872031 + AluSx SINE Alu 1 305 -7 378 290 143 51 chr11 12911460 12911677 -135871795 - MIR SINE MIR -20 242 6 696 220 77 0 chr11 12911747 12911915 -135871557 - L1MD2 LINE L1 -18 6341 6161 5709 36 7 0 chr11 12912087 12912790 -135870682 - L1PA5 LINE L1 -226 5928 5222 1519 174 70 86 chr11 12913239 12913612 -135869860 + MLT1B LTR MaLR 1 367 -23 242 145 53 26 chr11 12913612 12913688 -135869784 + (TTATA)n Simple_repeat Simple_repeat 3 80 0 192 152 0 0 chr11 12913716 12913749 -135869723 + MIR SINE MIR 78 110 -152 543 273 82 8 chr11 12913811 12914120 -135869352 + MLT1I LTR MaLR 1 370 -39 1524 199 0 33 chr11 12914754 12915056 -135868416 + AluJo SINE Alu 4 295 -17 274 182 36 0 chr11 12915127 12915182 -135868290 + L2 LINE L2 3254 3310 -3 241 252 90 27 chr11 12915193 12915304 -135868168 + MIR SINE MIR 25 142 -120 318 243 45 90 chr11 12916274 12916451 -135867021 + L2 LINE L2 2336 2504 -810 303 299 111 8 chr11 12918528 12918645 -135864827 + L2 LINE L2 3183 3311 -2 614 267 74 0 chr11 12919186 12919362 -135864110 + MIR SINE MIR 74 262 0 1289 258 109 28 chr11 12919671 12920066 -135863406 - LTR16A LTR ERVL -6 444 18 2388 200 114 137 chr11 12920909 12921771 -135861701 + L1MC4 LINE L1 6356 7236 -806 232 31 0 0 chr11 12921771 12921803 -135861669 + MADE1 DNA Mariner 1 32 -48 1898 70 8 0 chr11 12921803 12922070 -135861402 + L1PA8 LINE L1 5912 6180 0 455 84 0 56 chr11 12922075 12922146 -135861326 - MADE1 DNA Mariner -12 68 2 2388 200 114 137 chr11 12922146 12922447 -135861025 + L1MC4 LINE L1 7239 7599 -443 3160 178 24 43 chr11 12922455 12922541 -135860931 + L1MB7 LINE L1 5478 5564 -620 2256 82 26 10 chr11 12922541 12922844 -135860628 + AluSg SINE Alu 1 308 -2 3160 178 24 43 chr11 12922844 12923477 -135859995 + L1MB7 LINE L1 5564 6183 -1 719 313 108 33 chr11 12923591 12924074 -135859398 - L2 LINE L2 -1391 1923 1405 1916 249 69 68 chr11 12924075 12924781 -135858691 - MER72 LTR ERV1 -10 712 6 427 255 108 19 chr11 12924858 12925015 -135858457 + MIR SINE MIR 86 256 -6 264 304 35 61 chr11 12925071 12925186 -135858286 + L2 LINE L2 3190 3301 -12 282 346 28 22 chr11 12925210 12925389 -135858083 - MIR SINE MIR -14 248 69 2017 134 3 0 chr11 12925860 12926175 -135857297 - AluSq SINE Alu 0 316 1 439 59 15 15 chr11 12926525 12926593 -135856879 + (TTCC)n Simple_repeat Simple_repeat 3 70 0 568 257 80 33 chr11 12926606 12926906 -135856566 - L1MC5 LINE L1 -387 7574 7261 220 299 75 19 chr11 12927095 12927202 -135856270 - L2 LINE L2 -1 3271 3159 222 303 103 49 chr11 12929013 12929198 -135854274 + MIR SINE MIR 61 255 -7 698 293 108 13 chr11 12929251 12929483 -135853989 + MIR SINE MIR 8 261 -1 202 256 0 0 chr11 12929962 12930005 -135853467 + A-rich Low_complexity Low_complexity 1 43 0 2554 38 0 0 chr11 12930501 12930793 -135852679 - AluY SINE Alu -19 292 1 326 170 2 31 chr11 12931231 12931307 -135852165 + L1M2 LINE L1 5767 5841 -339 279 0 0 0 chr11 12931395 12931426 -135852046 + (CA)n Simple_repeat Simple_repeat 1 31 0 408 284 149 37 chr11 12931433 12931754 -135851718 + L2 LINE L2 2231 2587 -727 8091 127 19 3 chr11 12931935 12933144 -135850328 + Tigger3b DNA MER2_type 4 1231 0 276 306 101 44 chr11 12933229 12933592 -135849880 + L2 LINE L2 2683 3061 -211 8036 136 11 11 chr11 12933621 12933953 -135849519 - HSMAR2 DNA Mariner -68 1234 903 13107 81 0 0 chr11 12933953 12936389 -135847083 + L1PA7 LINE L1 3709 6149 -5 8036 136 11 11 chr11 12936389 12937289 -135846183 - HSMAR2 DNA Mariner -399 903 3 287 262 24 24 chr11 12937485 12937569 -135845903 - HAL1b LINE L1 -437 911 828 22 88 0 0 chr11 12938224 12938281 -135845191 + AT_rich Low_complexity Low_complexity 1 57 0 245 316 55 33 chr11 12938289 12938564 -135844908 - L1M4 LINE L1 -2988 3158 2878 22 56 0 0 chr11 12938601 12938637 -135844835 + AT_rich Low_complexity Low_complexity 1 36 0 1093 243 98 3 chr11 12938866 12939183 -135844289 + L2 LINE L2 2403 2749 -565 346 148 56 0 chr11 12939183 12939237 -135844235 - Tigger3(Golem) DNA MER2_type -1 3028 2972 * 1863 93 7 7 chr11 12939236 12939505 -135843967 - Tigger3(Golem) DNA MER2_type -226 2803 2535 481 296 147 75 chr11 12940696 12941353 -135842119 + L2 LINE L2 2571 3270 -2 2299 93 0 7 chr11 12941457 12941757 -135841715 + AluSg SINE Alu 1 298 -12 322 285 75 92 chr11 12942317 12942675 -135840797 - L2 LINE L2 -4 3268 2917 420 228 119 0 chr11 12942738 12942839 -135840633 + MER94 DNA DNA 1 113 -21 1677 158 63 36 chr11 12943042 12943084 -135840388 - THE1C LTR MaLR 0 428 389 2303 108 0 0 chr11 12943084 12943405 -135840067 + AluSq SINE Alu 1 313 0 1677 158 63 36 chr11 12943405 12943454 -135840018 - THE1C LTR MaLR -39 389 343 4444 92 37 2 chr11 12943454 12944051 -135839421 - L1PA10 LINE L1 -5 6163 5546 1677 158 63 36 chr11 12944051 12944377 -135839095 - THE1C LTR MaLR -85 343 1 234 268 0 122 chr11 12944416 12944539 -135838933 + L2 LINE L2 3150 3257 -15 585 255 112 48 chr11 12944547 12944798 -135838674 + L2 LINE L2 3042 3308 -5 287 291 201 0 chr11 12946272 12946406 -135837066 - L2 LINE L2 0 3272 3112 190 261 0 0 chr11 12947445 12947491 -135835981 - MIR SINE MIR -65 143 98 242 279 109 24 chr11 12947780 12947945 -135835527 + MIR3 SINE MIR 9 187 -21 1518 252 94 29 chr11 12948692 12948738 -135834734 - MLT2B1 LTR ERVL 0 520 478 306 0 0 0 chr11 12948738 12948772 -135834700 + (TG)n Simple_repeat Simple_repeat 2 35 0 1518 252 94 29 chr11 12948772 12948959 -135834513 - MLT2B1 LTR ERVL -42 478 305 297 0 0 0 chr11 12948959 12948992 -135834480 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1518 252 94 29 chr11 12948992 12949245 -135834227 - MLT2B1 LTR ERVL -215 305 1 249 283 43 11 chr11 12950174 12950266 -135833206 - LTR67 LTR ERVL -75 482 388 1882 154 51 0 chr11 12950849 12951141 -135832331 - AluJb SINE Alu -5 307 1 181 282 24 89 chr11 12951166 12951290 -135832182 - L2 LINE L2 0 3272 3157 460 321 23 0 chr11 12951355 12951486 -135831986 + MER94 DNA DNA 1 134 0 1923 153 3 16 chr11 12951540 12951848 -135831624 - AluSx SINE Alu -8 304 1 695 257 77 80 chr11 12951950 12952154 -135831318 - MLT1K LTR MaLR -19 569 365 2351 153 80 5 chr11 12952154 12952552 -135830920 - MSTA LTR MaLR 0 428 1 695 257 77 80 chr11 12952552 12952736 -135830736 - MLT1K LTR MaLR -223 365 182 726 242 76 114 chr11 12952806 12953307 -135830165 + LTR38 LTR ERV1 50 541 -15 1336 183 71 11 chr11 12953750 12954018 -135829454 - AluJo SINE Alu -18 294 11 323 329 63 0 chr11 12954026 12954169 -135829303 + MIR SINE MIR 70 221 -41 2097 133 3 0 chr11 12954205 12954499 -135828973 - AluSq SINE Alu -18 295 1 436 234 95 7 chr11 12954785 12954922 -135828550 + MIR SINE MIR 85 233 -29 1772 169 13 13 chr11 12955608 12955916 -135827556 - AluJb SINE Alu -3 309 2 597 283 25 29 chr11 12955916 12956156 -135827316 - LTR16A1 LTR ERVL -6 451 213 212 255 20 0 chr11 12956387 12956438 -135827034 - L3 LINE CR1 -204 1373 1322 190 339 18 0 chr11 12956459 12956515 -135826957 - L2 LINE L2 -8 3264 3208 332 344 16 0 chr11 12956515 12956640 -135826832 - L3 LINE CR1 -829 748 622 2003 125 3 56 chr11 12956964 12957284 -135826188 + AluSx SINE Alu 1 303 -9 28 91 0 0 chr11 12957310 12957387 -135826085 + AT_rich Low_complexity Low_complexity 1 77 0 236 279 0 0 chr11 12958060 12958121 -135825351 + L1M4 LINE L1 3881 3941 -2205 409 264 0 98 chr11 12958199 12958362 -135825110 - MIR SINE MIR -21 241 95 631 251 81 51 chr11 12958670 12958767 -135824705 + MIR SINE MIR 14 107 -155 9254 161 22 2 chr11 12958767 12959498 -135823974 - L1PA13 LINE L1 0 6163 5448 1534 186 33 20 chr11 12959498 12959799 -135823673 - AluJb SINE Alu -7 305 1 9254 161 22 2 chr11 12959799 12961414 -135822058 - L1PA13 LINE L1 -715 5448 3793 631 251 81 51 chr11 12961414 12961551 -135821921 + MIR SINE MIR 107 255 -7 570 212 114 8 chr11 12961625 12961757 -135821715 + MER5A DNA MER1_type 1 146 -43 1836 253 48 23 chr11 12961757 12962235 -135821237 + MLT1F LTR MaLR 1 490 -52 7061 43 1 1 chr11 12962248 12963088 -135820384 - L1PA5 LINE L1 -4 6150 5311 426 138 0 0 chr11 12963103 12963168 -135820304 + MLT1F LTR MaLR 501 565 -2 262 235 0 0 chr11 12963170 12963221 -135820251 + MER5A DNA MER1_type 139 189 0 2214 108 3 13 chr11 12963304 12963620 -135819852 + AluSq SINE Alu 1 313 0 197 294 24 24 chr11 12963689 12963774 -135819698 + L3 LINE CR1 1065 1149 -428 1035 242 58 31 chr11 12965788 12966239 -135817233 - Charlie2 DNA MER1_type -1 2861 2399 * 2177 277 70 45 chr11 12966234 12967062 -135816410 - Charlie2b DNA MER1_type -1741 1041 193 216 196 0 0 chr11 12967082 12967128 -135816344 + A-rich Low_complexity Low_complexity 1 46 0 273 292 28 0 chr11 12967221 12967293 -135816179 - LTR67 LTR ERVL -370 187 114 215 336 167 9 chr11 12967495 12967819 -135815653 + L2 LINE L2 2353 2727 -587 826 208 60 0 chr11 12967842 12968010 -135815462 + MER5B DNA MER1_type 1 178 0 308 263 70 32 chr11 12968051 12968207 -135815265 + L2 LINE L2 2845 3006 -266 2817 3 0 7 chr11 12968296 12968601 -135814871 + AluYa5 SINE Alu 1 303 -8 189 121 0 0 chr11 12968724 12968757 -135814715 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 210 171 0 0 chr11 12969022 12969057 -135814415 + (TTA)n Simple_repeat Simple_repeat 1 35 0 802 268 77 45 chr11 12969701 12970260 -135813212 - L1ME4a LINE L1 -41 6080 5504 252 301 36 0 chr11 12971277 12971360 -135812112 - MER117 DNA MER1_type 0 197 112 186 318 106 0 chr11 12971422 12971488 -135811984 + L2 LINE L2 3199 3271 -1 215 316 88 52 chr11 12971869 12972062 -135811410 - MIR SINE MIR -41 221 22 395 134 0 56 chr11 12972202 12972344 -135811128 + (CAGAGA)n Simple_repeat Simple_repeat 5 138 0 202 244 0 0 chr11 12972478 12972523 -135810949 + T-rich Low_complexity Low_complexity 1 45 0 1653 183 30 21 chr11 12973603 12973937 -135809535 + L1MA9 LINE L1 5972 6308 -4 2109 132 3 10 chr11 12974971 12975282 -135808190 + AluSx SINE Alu 1 309 -3 466 240 78 0 chr11 12975451 12975605 -135807867 + HAL1 LINE L1 2237 2402 -105 378 297 93 0 chr11 12975812 12975930 -135807542 + L2 LINE L2 3136 3264 -8 343 262 223 53 chr11 12976360 12976566 -135806906 - MIR SINE MIR 0 262 22 349 269 11 0 chr11 12976806 12976899 -135806573 - MIR SINE MIR -2 260 167 2125 111 0 0 chr11 12976943 12977251 -135806221 + AluSg SINE Alu 1 308 0 610 200 9 0 chr11 12977265 12977375 -135806097 + MER58A DNA MER1_type 5 115 0 320 64 0 21 chr11 12977376 12977423 -135806049 - AluSc SINE Alu -172 127 82 559 77 13 0 chr11 12977523 12977601 -135805871 - AluY SINE Alu -232 79 1 363 204 158 0 chr11 12977601 12977753 -135805719 + L1MD1 LINE L1 4318 4493 -1653 4942 174 40 14 chr11 12977764 12979195 -135804277 + L1MD1 LINE L1 4769 6235 -7 26 30 0 0 chr11 12979360 12979393 -135804079 + AT_rich Low_complexity Low_complexity 1 33 0 403 255 45 41 chr11 12979461 12979642 -135803830 - MIR SINE MIR -67 141 11 645 314 75 9 chr11 12979650 12979876 -135803596 + MIR SINE MIR 8 248 -14 938 197 86 4 chr11 12981068 12981301 -135802171 + Charlie1 DNA MER1_type 1721 1972 -789 258 291 203 11 chr11 12981328 12981510 -135801962 - L2 LINE L2 -1094 2220 2004 532 210 168 0 chr11 12982131 12982298 -135801174 - MER5C DNA MER1_type -2 322 128 767 173 60 0 chr11 12982860 12983010 -135800462 - FRAM SINE Alu -18 158 1 210 71 0 0 chr11 12983803 12983831 -135799641 + (A)n Simple_repeat Simple_repeat 1 28 0 1948 148 3 3 chr11 12983879 12984170 -135799302 + AluSx SINE Alu 3 293 -19 2084 143 0 3 chr11 12984354 12984655 -135798817 - AluSx SINE Alu -12 300 1 6520 57 5 8 chr11 12984863 12985712 -135797760 + L1PA6 LINE L1 5308 6153 -1 25 31 0 0 chr11 12985713 12985745 -135797727 + AT_rich Low_complexity Low_complexity 1 32 0 258 179 0 90 chr11 12986418 12986459 -135797013 - MER5C DNA MER1_type -200 124 92 2099 122 7 3 chr11 12986459 12986746 -135796726 - AluSg SINE Alu -22 288 1 258 179 0 90 chr11 12986746 12986782 -135796690 - MER5C DNA MER1_type -232 92 54 339 85 0 0 chr11 12987060 12987107 -135796365 + (TG)n Simple_repeat Simple_repeat 2 48 0 26 88 0 0 chr11 12987366 12987434 -135796038 + AT_rich Low_complexity Low_complexity 1 68 0 344 295 93 51 chr11 12987611 12987848 -135795624 + L1MC/D LINE L1 5313 5559 -2249 464 308 49 45 chr11 12988486 12988733 -135794739 - MIR SINE MIR -13 249 2 3316 72 28 0 chr11 12990087 12990517 -135792955 + MLT2A1 LTR ERVL 1 442 -2 1069 264 108 24 chr11 12990517 12990963 -135792509 - LTR33 LTR ERVL -14 507 21 1453 165 12 5 chr11 12991269 12991607 -135791865 + MSTB LTR MaLR 1 426 0 2681 151 15 0 chr11 12991607 12992072 -135791400 + MSTB-int LTR MaLR 1 472 -1179 611 261 72 57 chr11 12992084 12992559 -135790913 - L1MEd LINE L1 -3220 3721 3240 232 211 0 53 chr11 12992880 12992956 -135790516 - HAL1 LINE L1 -904 1603 1532 330 274 86 43 chr11 12993138 12993393 -135790079 - L1MEd LINE L1 -4908 2023 1758 235 230 62 45 chr11 12993485 12993663 -135789809 - L1MEd LINE L1 -4961 1462 1282 2354 75 34 0 chr11 12993663 12993957 -135789515 + AluY SINE Alu 1 304 -7 210 139 0 0 chr11 12994133 12994169 -135789303 + (TTTC)n Simple_repeat Simple_repeat 2 37 0 760 152 46 53 chr11 12994488 12994639 -135788833 - MER5B DNA MER1_type -28 150 1 594 242 45 93 chr11 12994696 12994965 -135788507 + MER102b DNA MER1_type 54 309 -32 297 0 0 0 chr11 12995417 12995450 -135788022 + (TG)n Simple_repeat Simple_repeat 1 33 0 972 134 0 0 chr11 12995450 12995607 -135787865 + (TA)n Simple_repeat Simple_repeat 1 157 0 5069 211 19 16 chr11 12996206 12997555 -135785917 + L1 LINE L1 2798 4151 -1995 1021 184 40 5 chr11 12997557 12997758 -135785714 - MSTA LTR MaLR 0 428 221 264 219 0 0 chr11 12997774 12997838 -135785634 + L1M4 LINE L1 3179 3242 -2904 932 121 57 0 chr11 12997840 12997997 -135785475 + MSTA LTR MaLR 42 207 -221 527 71 24 0 chr11 12997985 12998069 -135785403 - MSTA LTR MaLR -342 86 1 * 1507 91 45 0 chr11 12998085 12998283 -135785189 + AluSx SINE Alu 1 207 -105 4438 64 0 2 chr11 12998386 12998949 -135784523 + L1PA6 LINE L1 5593 6154 0 347 285 41 49 chr11 12999229 12999352 -135784120 - MIR SINE MIR -67 141 20 209 341 32 16 chr11 12999575 12999701 -135783771 + L2 LINE L2 2599 2726 -588 274 267 103 26 chr11 12999751 12999867 -135783605 + MIR3 SINE MIR 70 194 -14 311 154 0 0 chr11 12999893 12999945 -135783527 + A-rich Low_complexity Low_complexity 1 52 0 224 240 40 0 chr11 13000032 13000082 -135783390 + MIR SINE MIR 53 104 -158 212 261 101 0 chr11 13000408 13000477 -135782995 + L2 LINE L2 3238 3313 0 804 249 173 25 chr11 13000908 13001266 -135782206 - L2 LINE L2 -30 3283 2873 35 24 0 0 chr11 13001384 13001426 -135782046 + AT_rich Low_complexity Low_complexity 1 42 0 387 241 29 95 chr11 13001967 13002104 -135781368 + MIR3 SINE MIR 15 142 -66 308 253 13 13 chr11 13003058 13003137 -135780335 + L2 LINE L2 3223 3301 -12 486 236 57 48 chr11 13003355 13003669 -135779803 - L1M4 LINE L1 -2736 3410 3094 1819 180 0 10 chr11 13003697 13004002 -135779470 - AluJo SINE Alu -2 310 9 5532 194 65 3 chr11 13004070 13005186 -135778286 + MSTB-int LTR MaLR 466 1651 0 2390 183 9 12 chr11 13005186 13005613 -135777859 + MSTB LTR MaLR 1 426 0 726 211 106 0 chr11 13005695 13005875 -135777597 - L2 LINE L2 0 3313 3115 181 301 39 68 chr11 13005981 13006084 -135777388 + L3 LINE CR1 60 159 -1418 270 258 97 32 chr11 13006181 13006274 -135777198 - MLT2E LTR ERVL -473 155 57 21 57 0 0 chr11 13006367 13006402 -135777070 + AT_rich Low_complexity Low_complexity 1 35 0 1138 256 77 59 chr11 13006412 13007040 -135776432 + L1ME LINE L1 4416 5062 -1084 2191 107 17 0 chr11 13007040 13007330 -135776142 - AluSg SINE Alu -15 295 1 1138 256 77 59 chr11 13007330 13007494 -135775978 + L1ME LINE L1 5062 5222 -924 321 209 114 19 chr11 13007496 13007601 -135775871 + MLT1H LTR MaLR 1 115 -434 258 152 0 0 chr11 13007747 13007793 -135775679 + MLT1G LTR MaLR 540 585 -5 1187 226 40 13 chr11 13007815 13008192 -135775280 + L1ME LINE L1 5317 5703 -467 639 223 22 44 chr11 13008172 13008401 -135775071 + L1ME LINE L1 4973 5196 -950 * 4865 148 3 5 chr11 13008395 13009159 -135774313 + L1PA15-16 LINE L1 12 773 -6076 2369 62 12 0 chr11 13009164 13009501 -135773971 + L1PA15-16 LINE L1 1757 2097 -4752 416 79 13 13 chr11 13009514 13009590 -135773882 - L1PA15-16 LINE L1 -4663 2186 2111 * 3091 252 23 8 chr11 13009581 13010504 -135772968 + L1PA15-16 LINE L1 2525 3461 -3388 545 299 89 82 chr11 13010611 13011096 -135772376 + L2 LINE L2 2806 3293 -20 215 290 127 68 chr11 13011121 13011624 -135771848 - L2 LINE L2 -1242 2072 1540 454 340 24 15 chr11 13011672 13011878 -135771594 - MIR SINE MIR -54 208 1 224 298 57 50 chr11 13012358 13012499 -135770973 - L2 LINE L2 -2570 744 603 572 258 129 58 chr11 13012941 13013075 -135770397 + MIR SINE MIR 6 129 -133 1636 163 33 39 chr11 13013075 13013382 -135770090 + AluJb SINE Alu 1 305 -7 572 258 129 58 chr11 13013382 13013487 -135769985 + MIR SINE MIR 129 262 0 1349 146 13 4 chr11 13013799 13014038 -135769434 + L1MB3 LINE L1 5935 6175 -8 248 269 45 45 chr11 13014257 13014391 -135769081 + L1ME LINE L1 5518 5651 -470 1782 161 4 4 chr11 13014393 13014673 -135768799 + AluSx SINE Alu 1 280 -32 1301 92 58 0 chr11 13014673 13014846 -135768626 + AluY SINE Alu 97 279 -32 261 0 0 0 chr11 13014861 13014890 -135768582 + (TA)n Simple_repeat Simple_repeat 2 30 0 28 48 0 0 chr11 13015778 13015820 -135767652 + AT_rich Low_complexity Low_complexity 1 42 0 618 150 30 8 chr11 13015925 13016058 -135767414 + L1MB2 LINE L1 5935 6070 -101 238 292 104 58 chr11 13016080 13016234 -135767238 - L2 LINE L2 -236 3036 2876 191 250 12 0 chr11 13016470 13016554 -135766918 + GA-rich Low_complexity Low_complexity 2 86 0 399 296 75 80 chr11 13016837 13017402 -135766070 - L2 LINE L2 -85 3187 2635 338 261 140 7 chr11 13019158 13019338 -135764134 + MIR SINE MIR 63 262 0 252 301 92 6 chr11 13019578 13019741 -135763731 + L2 LINE L2 2703 2879 -435 266 369 51 41 chr11 13019768 13019963 -135763509 + L2 LINE L2 2982 3178 -94 332 123 0 31 chr11 13020046 13020111 -135763361 + (GGAA)n Simple_repeat Simple_repeat 2 64 0 404 245 176 15 chr11 13020899 13021103 -135762369 + MIR SINE MIR 20 256 -6 430 258 0 41 chr11 13021238 13021335 -135762137 - L2 LINE L2 0 3272 3180 994 182 16 31 chr11 13021400 13021592 -135761880 - MER5A DNA MER1_type 0 189 1 436 335 81 0 chr11 13022215 13022400 -135761072 + MIR SINE MIR 49 248 -14 209 348 127 17 chr11 13022589 13022770 -135760702 - L2 LINE L2 -1335 1979 1779 2177 98 3 0 chr11 13022802 13023089 -135760383 + AluSp SINE Alu 1 288 -25 213 39 0 0 chr11 13023859 13023885 -135759587 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2008 131 3 10 chr11 13024158 13024456 -135759016 - AluSq SINE Alu -17 296 1 470 270 40 81 chr11 13024599 13024773 -135758699 + MIR SINE MIR 16 182 -80 871 257 40 32 chr11 13024775 13025028 -135758444 + MIR SINE MIR 8 262 0 186 143 0 0 chr11 13025093 13025128 -135758344 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 27 0 0 0 chr11 13026397 13026424 -135757048 + AT_rich Low_complexity Low_complexity 1 27 0 240 111 0 0 chr11 13027034 13027079 -135756393 + (ATTG)n Simple_repeat Simple_repeat 4 48 0 498 313 128 4 chr11 13027082 13027325 -135756147 - L2 LINE L2 -20 3293 3021 237 197 71 79 chr11 13027611 13027738 -135755734 - L2 LINE L2 -211 3061 2936 670 113 35 21 chr11 13027738 13027880 -135755592 + CT-rich Low_complexity Low_complexity 3 146 0 558 192 10 0 chr11 13028494 13028598 -135754874 - Tigger5 DNA MER2_type 0 2323 2219 246 245 0 0 chr11 13028593 13028646 -135754826 - Tigger5 DNA MER2_type -2270 53 1 * 397 294 125 19 chr11 13028646 13028850 -135754622 + L1ME4a LINE L1 5715 5896 -225 776 188 16 0 chr11 13028850 13028978 -135754494 + FLAM_A SINE Alu 1 130 -3 397 294 125 19 chr11 13028978 13029141 -135754331 + L1ME4a LINE L1 5896 6121 0 507 298 50 22 chr11 13029671 13029993 -135753479 - L1M4 LINE L1 -1083 5063 4733 320 310 0 0 chr11 13030596 13030683 -135752789 + MER5B DNA MER1_type 68 154 -24 210 294 44 0 chr11 13030731 13030799 -135752673 + MIR SINE MIR 111 181 -81 * 856 241 5 0 chr11 13030797 13030988 -135752484 - MIR SINE MIR 0 262 71 191 247 178 0 chr11 13031011 13031084 -135752388 + MIR SINE MIR 167 252 -10 1128 302 186 8 chr11 13031450 13032192 -135751280 - L3 LINE CR1 -100 1477 604 695 228 56 0 chr11 13032243 13032423 -135751049 + MIR SINE MIR 52 241 -21 578 262 87 0 chr11 13032445 13032594 -135750878 - L3 LINE CR1 -982 595 434 23 33 0 0 chr11 13034055 13034085 -135749387 + GC_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr11 13034208 13034236 -135749236 + GC_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr11 13034311 13034346 -135749126 + GC_rich Low_complexity Low_complexity 1 35 0 342 333 21 36 chr11 13036222 13036414 -135747058 + MIR3 SINE MIR 17 205 -3 295 265 191 5 chr11 13037231 13037420 -135746052 + MIR SINE MIR 15 238 -24 1746 166 28 0 chr11 13037840 13038129 -135745343 - AluJb SINE Alu -15 297 1 681 278 43 17 chr11 13038489 13038723 -135744749 + MIR SINE MIR 14 253 -9 200 127 309 0 chr11 13039609 13039664 -135743808 + MIR SINE MIR 82 153 -109 570 225 151 23 chr11 13039673 13039891 -135743581 - MIR SINE MIR 0 262 17 3801 103 14 4 chr11 13040021 13040574 -135742898 + L1PA16 LINE L1 5599 6157 -9 3786 181 23 74 chr11 13040583 13041155 -135742317 + L1MB5 LINE L1 5114 5714 -620 1667 180 0 46 chr11 13041155 13041461 -135742011 + AluJo SINE Alu 1 292 -20 3786 181 23 74 chr11 13041461 13042016 -135741456 + L1MB5 LINE L1 5714 6334 0 380 200 139 9 chr11 13042014 13042129 -135741343 + L1MB4 LINE L1 6049 6178 -2 * 1072 274 80 38 chr11 13042138 13042565 -135740907 + L1ME3A LINE L1 5691 6135 -35 1857 149 3 3 chr11 13042852 13043134 -135740338 - AluJb SINE Alu -30 282 1 691 249 81 23 chr11 13043685 13043906 -135739566 + MLT1J2 LTR MaLR 5 238 -212 473 285 86 19 chr11 13044314 13044581 -135738891 + L1ME4a LINE L1 5619 5903 -218 606 152 72 58 chr11 13045054 13045192 -135738280 + AluJb SINE Alu 173 312 0 234 270 171 0 chr11 13045929 13046040 -135737432 + L2 LINE L2 3184 3313 0 379 283 136 11 chr11 13046441 13046632 -135736840 - MIR SINE MIR -34 228 14 337 267 115 30 chr11 13047032 13047197 -135736275 + MIR SINE MIR 8 186 -76 310 263 53 0 chr11 13047295 13047390 -135736082 + L1MC4a LINE L1 5542 5641 -480 356 237 112 26 chr11 13047422 13047574 -135735898 + L1MC4a LINE L1 5723 5887 -1921 282 29 0 0 chr11 13047575 13047610 -135735862 + (CA)n Simple_repeat Simple_repeat 1 35 0 286 359 75 35 chr11 13047698 13048016 -135735456 + L2 LINE L2 2887 3217 -55 364 270 47 62 chr11 13049107 13049318 -135734154 - L2 LINE L2 -8 3305 3098 1562 337 84 24 chr11 13049567 13050818 -135732654 - L2 LINE L2 -199 3073 1747 242 258 210 44 chr11 13050940 13051169 -135732303 - L2 LINE L2 -2808 506 240 2112 99 21 7 chr11 13051173 13051482 -135731990 + AluSc SINE Alu 1 309 0 259 311 92 8 chr11 13052537 13052656 -135730816 - L2 LINE L2 -229 3043 2915 258 286 57 19 chr11 13052785 13052890 -135730582 - L2 LINE L2 -490 2824 2716 385 249 40 79 chr11 13053389 13053516 -135729956 + MIR SINE MIR 37 157 -105 2267 101 0 3 chr11 13053516 13053812 -135729660 + AluSq SINE Alu 3 297 -16 385 249 40 79 chr11 13053812 13053861 -135729611 + MIR SINE MIR 157 206 -56 264 282 13 13 chr11 13055465 13055543 -135727929 + CT-rich Low_complexity Low_complexity 3 80 0 418 242 46 134 chr11 13055796 13055930 -135727542 + MIR SINE MIR 21 134 -128 1778 178 20 0 chr11 13055930 13056222 -135727250 + AluJb SINE Alu 1 298 -14 418 242 46 134 chr11 13056222 13056281 -135727191 + MIR SINE MIR 134 197 -65 4295 64 2 6 chr11 13056543 13057089 -135726383 + L1PA8 LINE L1 5629 6172 0 25 0 0 0 chr11 13057118 13057143 -135726329 + AT_rich Low_complexity Low_complexity 1 25 0 1932 128 69 3 chr11 13058585 13058874 -135724598 - AluJo SINE Alu -4 308 1 297 0 0 0 chr11 13059068 13059101 -135724371 + (TG)n Simple_repeat Simple_repeat 2 34 0 2307 81 3 0 chr11 13059123 13059407 -135724065 - AluSp SINE Alu -28 285 1 228 182 0 0 chr11 13061677 13061721 -135721751 + (CA)n Simple_repeat Simple_repeat 2 45 0 344 119 17 0 chr11 13061729 13061788 -135721684 + (TA)n Simple_repeat Simple_repeat 1 60 0 1015 258 133 28 chr11 13061946 13062722 -135720750 + L2 LINE L2 2451 3313 0 376 307 40 7 chr11 13063324 13063474 -135719998 - MER117 DNA MER1_type -37 160 6 251 208 0 0 chr11 13064957 13065010 -135718462 - L2 LINE L2 -3 3269 3217 499 253 114 6 chr11 13065096 13065262 -135718210 + MIR SINE MIR 15 198 -64 516 279 137 24 chr11 13065965 13066302 -135717170 + L1MC4 LINE L1 7656 8030 -12 383 282 25 43 chr11 13066546 13066713 -135716759 - MIR SINE MIR -57 205 42 1314 272 21 3 chr11 13066748 13067083 -135716389 - LTR16C LTR ERVL 0 491 151 638 310 40 35 chr11 13068384 13068610 -135714862 - MIR SINE MIR -15 247 21 2010 161 62 5 chr11 13068659 13068892 -135714580 - L1MB4 LINE L1 -1 6179 5961 2163 123 7 0 chr11 13068892 13069194 -135714278 + AluSq SINE Alu 1 304 -9 2010 161 62 5 chr11 13069194 13069383 -135714089 - L1MB4 LINE L1 -219 5961 5733 393 247 142 12 chr11 13069823 13069985 -135713487 - MIR SINE MIR -7 255 73 484 307 80 13 chr11 13069991 13070229 -135713243 - L1ME LINE L1 -308 5813 5560 183 100 0 0 chr11 13070334 13070364 -135713108 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 403 225 80 152 chr11 13070628 13071068 -135712404 + L1ME4a LINE L1 5641 6048 -73 872 252 20 20 chr11 13071750 13071996 -135711476 + MIR SINE MIR 7 252 -10 438 202 20 10 chr11 13072286 13072385 -135711087 - MIR SINE MIR -69 193 94 1796 159 33 0 chr11 13073027 13073298 -135710174 + AluJb SINE Alu 5 284 -28 405 0 0 0 chr11 13073298 13073343 -135710129 + (CA)n Simple_repeat Simple_repeat 2 46 0 2360 109 0 0 chr11 13073967 13074271 -135709201 - AluSx SINE Alu -8 304 1 561 203 0 0 chr11 13074313 13074420 -135709052 - MER5A DNA MER1_type -79 110 4 214 312 0 0 chr11 13074592 13074669 -135708803 + MIR SINE MIR 175 251 -11 519 260 8 16 chr11 13075175 13075302 -135708170 + L2 LINE L2 3188 3313 0 393 208 30 56 chr11 13075336 13075473 -135707999 + MIR SINE MIR 17 146 -62 435 278 75 75 chr11 13076134 13076361 -135707111 - MIR SINE MIR -2 260 34 234 258 99 60 chr11 13076559 13076710 -135706762 - MIR SINE MIR -30 232 76 367 286 101 73 chr11 13077115 13077363 -135706109 - MIR SINE MIR 0 262 8 222 200 100 14 chr11 13077493 13077563 -135705909 - MIR SINE MIR -62 200 125 1421 127 0 0 chr11 13077915 13078112 -135705360 + AluSg/x SINE Alu 84 280 -32 204 40 0 0 chr11 13078112 13078137 -135705335 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 22 35 0 0 chr11 13078447 13078476 -135704996 + AT_rich Low_complexity Low_complexity 1 29 0 914 155 0 0 chr11 13078674 13078816 -135704656 - FLAM_C SINE Alu -1 142 1 1142 194 138 3 chr11 13078961 13079244 -135704228 + MER33 DNA MER1_type 3 323 -1 784 180 112 0 chr11 13079517 13079678 -135703794 + MIR SINE MIR 36 214 -48 334 302 35 53 chr11 13079727 13079898 -135703574 - L1ME LINE L1 -690 5432 5267 259 340 0 30 chr11 13080344 13080444 -135703028 + MIR SINE MIR 34 130 -132 266 254 40 54 chr11 13080732 13080904 -135702568 - MIR SINE MIR -79 129 19 705 279 29 33 chr11 13080950 13081194 -135702278 + MIR SINE MIR 2 244 -18 2037 142 6 3 chr11 13081963 13082274 -135701198 - AluSx SINE Alu 0 312 1 762 274 48 36 chr11 13082593 13082841 -135700631 - MIR SINE MIR 0 262 12 264 315 14 0 chr11 13083045 13083118 -135700354 - L2 LINE L2 -30 3283 3210 21 0 0 0 chr11 13083945 13083966 -135699506 + AT_rich Low_complexity Low_complexity 1 21 0 701 205 0 0 chr11 13083966 13084083 -135699389 - FLAM_C SINE Alu -24 119 3 265 274 41 0 chr11 13084403 13084476 -135698996 + L2 LINE L2 3196 3271 -1 541 321 47 22 chr11 13084854 13085107 -135698365 - MIR SINE MIR -10 252 1 279 264 46 92 chr11 13085298 13085472 -135698000 + L2 LINE L2 2943 3108 -164 436 295 22 22 chr11 13086213 13086352 -135697120 + MIR SINE MIR 14 152 -110 431 185 37 0 chr11 13086357 13086438 -135697034 + Tigger3(Golem) DNA MER2_type 3 86 -2943 4340 116 52 13 chr11 13086523 13087240 -135696232 + Tigger3(Golem) DNA MER2_type 2278 3022 -7 460 237 51 17 chr11 13087290 13087408 -135696064 - MIR SINE MIR -105 157 36 903 222 143 17 chr11 13087440 13087670 -135695802 + MIR SINE MIR 2 260 -2 419 284 182 33 chr11 13087772 13087914 -135695558 - L3 LINE CR1 -307 1270 1151 1119 169 42 33 chr11 13087914 13088127 -135695345 - MER20 DNA MER1_type -1 218 4 419 284 182 33 chr11 13088127 13088319 -135695153 - L3 LINE CR1 -426 1151 886 183 366 158 12 chr11 13088478 13088642 -135694830 + L2 LINE L2 2993 3180 -92 268 290 30 20 chr11 13089108 13089208 -135694264 + MIR SINE MIR 37 137 -125 1969 196 62 3 chr11 13089220 13089588 -135693884 - MSTD LTR MaLR -4 392 3 249 353 39 0 chr11 13089602 13089704 -135693768 + MIR SINE MIR 155 260 -2 499 350 101 53 chr11 13089868 13090305 -135693167 - L2 LINE L2 0 3272 2815 871 249 145 39 chr11 13090574 13090645 -135692827 + L2 LINE L2 2651 2713 -600 2553 137 77 20 chr11 13090645 13091048 -135692424 - MSTC LTR MaLR 0 428 3 871 249 145 39 chr11 13091048 13091524 -135691948 + L2 LINE L2 2713 3251 -62 315 0 0 0 chr11 13091858 13091893 -135691579 + (TTA)n Simple_repeat Simple_repeat 1 35 0 552 296 91 14 chr11 13091909 13092129 -135691343 - MIR SINE MIR -18 244 8 201 244 0 0 chr11 13092544 13092589 -135690883 - MIR SINE MIR -56 206 162 232 339 86 0 chr11 13092815 13092937 -135690535 - MIR SINE MIR -63 145 14 2467 52 3 13 chr11 13093570 13093875 -135689597 + AluY SINE Alu 10 311 0 335 268 167 26 chr11 13093942 13094306 -135689166 - MLT1J LTR MaLR 0 511 39 331 259 100 62 chr11 13094570 13094746 -135688726 + MIR3 SINE MIR 5 181 -81 397 258 98 8 chr11 13095605 13095737 -135687735 + L1ME4a LINE L1 5975 6118 -3 255 314 67 0 chr11 13096499 13096604 -135686868 - L2 LINE L2 -19 3294 3183 216 191 0 0 chr11 13096605 13096647 -135686825 + GA-rich Low_complexity Low_complexity 1 42 0 182 246 35 18 chr11 13096738 13096795 -135686677 - MIR SINE MIR -133 75 18 21 36 0 0 chr11 13098399 13098427 -135685045 + AT_rich Low_complexity Low_complexity 1 28 0 286 299 106 29 chr11 13098668 13098875 -135684597 - L2 LINE L2 -556 2758 2536 204 346 0 29 chr11 13098949 13099053 -135684419 + L2 LINE L2 2890 2990 -282 * 334 265 77 8 chr11 13099034 13099151 -135684321 + MIR SINE MIR 60 184 -78 587 224 148 19 chr11 13099173 13099383 -135684089 + L2 LINE L2 2614 2850 -464 216 299 179 60 chr11 13099384 13099501 -135683971 + MER91C DNA MER1_type 1 131 -9 1204 234 158 31 chr11 13099504 13099802 -135683670 + L2 LINE L2 2842 3210 -103 208 27 54 27 chr11 13099802 13099839 -135683633 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1204 234 158 31 chr11 13099839 13099959 -135683513 + L2 LINE L2 3210 3313 0 191 313 47 116 chr11 13100053 13100328 -135683144 + L2 LINE L2 3006 3261 -11 244 317 58 8 chr11 13101471 13101591 -135681881 - L1ME LINE L1 -307 5814 5689 2072 125 4 0 chr11 13102227 13102533 -135680939 - AluSc SINE Alu 0 307 1 918 215 77 13 chr11 13103037 13103270 -135680202 - MIR SINE MIR -14 248 1 709 294 34 8 chr11 13104293 13104528 -135678944 - MIR SINE MIR 0 262 22 562 296 115 12 chr11 13104533 13104786 -135678686 - L2 LINE L2 0 3313 3035 1141 234 96 32 chr11 13104806 13105182 -135678290 - MLT1J2 LTR MaLR -29 421 22 1017 243 161 24 chr11 13105204 13105704 -135677768 - L2 LINE L2 -303 3010 2440 212 337 61 10 chr11 13106489 13106587 -135676885 - L2 LINE L2 -15 3257 3155 1524 246 12 10 chr11 13106635 13107046 -135676426 - L1M4 LINE L1 -1732 4414 4003 1496 231 90 38 chr11 13107044 13107443 -135676029 - L1MDa LINE L1 -6102 438 19 * 185 318 0 56 chr11 13107934 13108041 -135675431 - L2 LINE L2 -327 2986 2886 427 228 118 84 chr11 13108141 13108404 -135675068 - MLT1K LTR MaLR -176 412 141 190 316 89 32 chr11 13108536 13108694 -135674778 - L2 LINE L2 -568 2746 2580 1797 213 197 56 chr11 13109194 13109945 -135673527 - L2 LINE L2 -557 2757 1901 216 179 0 0 chr11 13110145 13110184 -135673288 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 1196 168 5 5 chr11 13110198 13110407 -135673065 + L1MB3 LINE L1 5973 6181 -2 350 272 48 40 chr11 13110886 13111011 -135672461 - L2 LINE L2 -1 3312 3187 1413 171 0 0 chr11 13111824 13112041 -135671431 - MER58A DNA MER1_type -6 218 2 347 292 120 19 chr11 13114124 13114333 -135669139 - MIR SINE MIR -13 249 20 1098 147 9 76 chr11 13114610 13114835 -135668637 - MER20 DNA MER1_type 0 219 10 237 286 31 31 chr11 13114935 13115033 -135668439 - MIR SINE MIR -90 172 75 432 296 67 64 chr11 13115036 13115307 -135668165 + L2 LINE L2 2782 3073 -240 820 248 48 32 chr11 13115560 13115810 -135667662 - MIR SINE MIR -4 258 5 823 183 0 21 chr11 13116764 13116906 -135666566 + FRAM SINE Alu 23 161 -15 533 157 49 0 chr11 13116910 13117012 -135666460 + L1ME1 LINE L1 5189 5295 -851 2540 215 48 45 chr11 13117026 13117737 -135665735 + L1ME1 LINE L1 5355 6067 -99 283 274 69 29 chr11 13117679 13117753 -135665719 + L1MA10 LINE L1 6170 6251 -83 * 276 30 0 0 chr11 13117753 13117786 -135665686 + (CA)n Simple_repeat Simple_repeat 2 34 0 283 274 69 29 chr11 13117786 13117813 -135665659 + L1MA10 LINE L1 6251 6275 -59 320 86 0 121 chr11 13118446 13118504 -135664968 + U2 snRNA snRNA 1 51 -137 1136 190 30 9 chr11 13118761 13118993 -135664479 + L1MD2 LINE L1 5760 5996 -363 361 275 0 0 chr11 13119126 13119206 -135664266 + L2 LINE L2 3234 3313 0 1975 89 0 0 chr11 13119294 13119540 -135663932 + AluSc SINE Alu 32 277 -32 254 143 20 0 chr11 13119540 13119589 -135663883 + (CAGA)n Simple_repeat Simple_repeat 2 51 0 826 179 0 0 chr11 13120710 13120833 -135662639 - FLAM_C SINE Alu -19 124 2 1962 152 0 19 chr11 13120948 13121263 -135662209 + AluJb SINE Alu 1 309 -3 1939 128 0 41 chr11 13121577 13121897 -135661575 + AluJo SINE Alu 6 312 0 473 299 109 65 chr11 13123721 13124106 -135659366 - L3 LINE CR1 -460 1117 716 324 274 26 21 chr11 13124124 13124237 -135659235 + MIR SINE MIR 32 147 -67 26 0 0 0 chr11 13125661 13125687 -135657785 + AT_rich Low_complexity Low_complexity 1 26 0 204 360 43 43 chr11 13126885 13127046 -135656426 - MIR3 SINE MIR -27 181 21 1768 213 81 88 chr11 13127159 13127951 -135655521 - L1MEc LINE L1 -1323 4892 4107 379 250 94 0 chr11 13127956 13128052 -135655420 - L1M4 LINE L1 -2368 3778 3674 371 219 17 17 chr11 13128052 13128171 -135655301 - L1M4 LINE L1 -3195 2951 2833 * 1165 253 102 0 chr11 13128170 13128574 -135654898 - L1MEc LINE L1 -2482 3733 3289 2562 223 50 51 chr11 13128575 13129394 -135654078 - L1MEc LINE L1 -3083 3132 2335 1623 119 0 4 chr11 13129394 13129641 -135653831 - AluJb SINE Alu 0 304 59 2562 223 50 51 chr11 13129641 13130350 -135653122 - L1MEc LINE L1 -3880 2335 1627 2978 263 64 21 chr11 13130481 13130748 -135652724 - L1MEc LINE L1 -4916 1299 1045 1102 132 22 44 chr11 13130748 13130975 -135652497 - L1MA5 LINE L1 -2 6298 6077 2978 263 64 21 chr11 13130975 13131952 -135651520 - L1MEc LINE L1 -5170 1045 40 774 184 178 0 chr11 13133588 13133751 -135649721 - MER58A DNA MER1_type -15 209 18 217 310 182 0 chr11 13134088 13134250 -135649222 - MIR SINE MIR -6 202 1 336 103 0 0 chr11 13134732 13134790 -135648682 + (GA)n Simple_repeat Simple_repeat 1 58 0 309 26 0 0 chr11 13134792 13134830 -135648642 + (TG)n Simple_repeat Simple_repeat 2 39 0 208 178 56 22 chr11 13134929 13135019 -135648453 + (TATAA)n Simple_repeat Simple_repeat 1 93 0 1004 322 157 17 chr11 13135026 13135657 -135647815 + L2 LINE L2 1723 2441 -873 216 217 50 67 chr11 13135663 13135723 -135647749 + L2 LINE L2 3214 3272 0 1621 243 101 20 chr11 13135840 13136369 -135647103 + MLT1G LTR MaLR 32 583 -7 344 341 8 15 chr11 13136379 13136511 -135646961 + L2 LINE L2 2560 2690 -624 1953 216 145 98 chr11 13136635 13137662 -135645810 + L2 LINE L2 2205 3313 0 535 332 103 38 chr11 13137662 13138032 -135645440 + L2 LINE L2 2812 3205 -67 1161 141 15 5 chr11 13138124 13138330 -135645142 + L1PB2 LINE L1 5941 6148 -3 758 168 16 0 chr11 13138583 13138708 -135644764 - FLAM_C SINE Alu -4 129 3 262 233 189 11 chr11 13139305 13139395 -135644077 - L2 LINE L2 0 3313 3208 1593 137 4 0 chr11 13140082 13140339 -135643133 + AluSx SINE Alu 55 312 0 308 388 39 17 chr11 13141623 13141801 -135641671 - MIR3 SINE MIR -8 200 19 2242 100 6 10 chr11 13142228 13142539 -135640933 + AluY SINE Alu 1 310 -1 1383 112 0 0 chr11 13142539 13142726 -135640746 + AluSg/x SINE Alu 126 312 0 739 180 14 0 chr11 13142964 13143103 -135640369 - AluSg/x SINE Alu -6 306 166 317 106 0 0 chr11 13143103 13143150 -135640322 + LTR3b LTR ERVK 7 53 -384 387 216 27 63 chr11 13143352 13143463 -135640009 + L2 LINE L2 3155 3261 -11 232 273 61 15 chr11 13143506 13143572 -135639900 - L2 LINE L2 -43 3270 3202 387 0 0 0 chr11 13144901 13144944 -135638528 + (CA)n Simple_repeat Simple_repeat 1 43 0 330 308 13 32 chr11 13145887 13146043 -135637429 + L2 LINE L2 2930 3082 -190 189 345 21 49 chr11 13146062 13146204 -135637268 - MIR SINE MIR -8 254 117 185 289 149 61 chr11 13146663 13146891 -135636581 + L2 LINE L2 2927 3174 -98 482 309 92 23 chr11 13147572 13147789 -135635683 + MIR SINE MIR 27 258 -4 939 248 75 16 chr11 13148529 13148851 -135634621 + MER102b DNA MER1_type 1 341 0 1620 152 0 0 chr11 13149100 13149330 -135634142 - AluSx SINE Alu -81 231 2 24 53 0 0 chr11 13150267 13150305 -135633167 + AT_rich Low_complexity Low_complexity 1 38 0 353 279 116 7 chr11 13151313 13151460 -135632012 - MIR SINE MIR -32 230 68 197 152 0 0 chr11 13151625 13151658 -135631814 - MIR SINE MIR -146 62 30 250 178 0 41 chr11 13152558 13152631 -135630841 + CT-rich Low_complexity Low_complexity 4 73 0 516 158 0 0 chr11 13152631 13152713 -135630759 - AluJ/FLAM SINE Alu -230 82 1 874 178 0 0 chr11 13152714 13152849 -135630623 - FRAM SINE Alu -22 154 20 244 320 148 33 chr11 13153536 13153658 -135629814 - L2 LINE L2 -1 3271 3136 272 266 109 47 chr11 13153933 13154061 -135629411 + L2 LINE L2 2387 2522 -792 189 0 0 0 chr11 13154677 13154698 -135628774 + (CAAAA)n Simple_repeat Simple_repeat 4 24 0 216 250 160 20 chr11 13154746 13154846 -135628626 - MIR SINE MIR -45 217 104 1811 210 20 13 chr11 13155038 13155429 -135628043 - MSTD LTR MaLR -2 394 1 349 300 66 30 chr11 13156252 13156594 -135626878 + L1ME LINE L1 49 410 -5660 189 132 38 19 chr11 13157106 13157159 -135626313 + (TA)n Simple_repeat Simple_repeat 1 54 0 291 271 79 41 chr11 13157247 13157534 -135625938 - L1MC4 LINE L1 -169 7678 7322 42552 37 2 1 chr11 13157578 13163728 -135619744 + L1PA4 LINE L1 1 6155 0 1358 162 179 23 chr11 13163731 13164077 -135619395 - MSTA LTR MaLR -27 401 2 348 259 38 35 chr11 13164122 13164332 -135619140 - L1MC4 LINE L1 -743 7218 7086 333 339 39 8 chr11 13164333 13164460 -135619012 - MIR SINE MIR -107 155 25 42 36 0 0 chr11 13164470 13164526 -135618946 + AT_rich Low_complexity Low_complexity 1 56 0 216 0 0 0 chr11 13165416 13165440 -135618032 + (T)n Simple_repeat Simple_repeat 1 24 0 26 0 0 0 chr11 13165671 13165697 -135617775 + AT_rich Low_complexity Low_complexity 1 26 0 508 306 43 17 chr11 13165934 13166335 -135617137 - L1MC4 LINE L1 -364 5757 5532 703 272 61 29 chr11 13167279 13167525 -135615947 + MIR SINE MIR 2 255 -7 312 316 111 46 chr11 13168169 13168400 -135615072 - MIR SINE MIR -7 255 13 296 357 20 0 chr11 13168718 13168816 -135614656 + MIR SINE MIR 22 121 -87 332 307 57 7 chr11 13168933 13169073 -135614399 + MIR SINE MIR 46 192 -70 263 262 116 113 chr11 13169418 13169649 -135613823 - L2 LINE L2 -18 3254 3020 2041 138 3 25 chr11 13169649 13169967 -135613505 - AluJo SINE Alu -1 311 1 263 262 116 113 chr11 13169967 13170063 -135613409 - L2 LINE L2 -252 3020 2926 955 273 104 75 chr11 13170146 13170495 -135612977 + L2 LINE L2 2214 2551 -762 2172 120 0 0 chr11 13170495 13170787 -135612685 - AluSx SINE Alu -20 292 1 750 125 0 0 chr11 13170793 13170913 -135612559 - L1MA5A LINE L1 -1 6296 6177 955 273 104 75 chr11 13170913 13171622 -135611850 + L2 LINE L2 2555 3287 -26 269 355 57 16 chr11 13171683 13171928 -135611544 - L2 LINE L2 -529 2785 2531 228 111 0 0 chr11 13172302 13172338 -135611134 + (T)n Simple_repeat Simple_repeat 1 36 0 342 0 0 0 chr11 13172528 13172566 -135610906 + (TG)n Simple_repeat Simple_repeat 1 38 0 31 26 0 0 chr11 13172706 13172744 -135610728 + AT_rich Low_complexity Low_complexity 1 38 0 333 22 0 0 chr11 13172747 13172793 -135610679 - HY1 scRNA scRNA -4 108 63 2257 99 0 3 chr11 13172793 13173086 -135610386 + AluSc SINE Alu 1 292 -17 677 238 112 27 chr11 13173199 13173493 -135609979 - MER20B DNA MER1_type -461 322 4 370 296 7 37 chr11 13173644 13173779 -135609693 - MIR SINE MIR -34 228 98 878 280 24 16 chr11 13174650 13174900 -135608572 + MIR SINE MIR 1 252 -10 443 292 78 88 chr11 13174926 13175337 -135608135 + L3 LINE CR1 1168 1574 -3 2314 105 0 0 chr11 13175634 13175938 -135607534 + AluSx SINE Alu 1 304 -8 271 271 37 58 chr11 13177789 13177977 -135605495 + MIR3 SINE MIR 14 197 -11 426 294 0 8 chr11 13179770 13179896 -135603576 + L2 LINE L2 3180 3304 -9 385 289 51 19 chr11 13179931 13180087 -135603385 - MIR SINE MIR -57 205 45 533 121 166 108 chr11 13181158 13181315 -135602157 + MER21A LTR ERV1 14 179 -752 * 756 198 31 25 chr11 13181286 13181448 -135602024 + MER39 LTR ERV1 219 381 -326 1272 177 27 9 chr11 13181695 13181915 -135601557 + MER58A DNA MER1_type 1 224 0 1798 266 77 34 chr11 13182374 13183255 -135600217 - L2 LINE L2 -168 3145 2209 292 226 0 0 chr11 13183365 13183427 -135600045 - L2 LINE L2 -2 3311 3250 25 0 0 0 chr11 13183484 13183509 -135599963 + AT_rich Low_complexity Low_complexity 1 25 0 2177 81 4 4 chr11 13183619 13183892 -135599580 - AluSg SINE Alu -37 273 1 326 305 76 36 chr11 13184134 13184357 -135599115 - L3 LINE CR1 -1 1576 1345 798 194 72 22 chr11 13184372 13184552 -135598920 - MER20 DNA MER1_type -30 189 1 340 311 82 8 chr11 13184645 13184767 -135598705 - MIR SINE MIR -115 147 17 2121 133 0 3 chr11 13184884 13185184 -135598288 - AluSx SINE Alu -13 299 1 250 329 0 0 chr11 13185358 13185443 -135598029 - L3 LINE CR1 -612 965 881 301 321 130 12 chr11 13185658 13185820 -135597652 - L3 LINE CR1 -1066 511 331 367 302 112 39 chr11 13186565 13186896 -135596576 + L1ME4a LINE L1 5760 6114 -7 663 146 92 0 chr11 13189395 13189525 -135593947 + L1MA5A LINE L1 6146 6287 -10 26 30 0 0 chr11 13189569 13189602 -135593870 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr11 13189704 13189732 -135593740 + AT_rich Low_complexity Low_complexity 1 28 0 440 263 85 71 chr11 13189938 13190162 -135593310 + MLT1J LTR MaLR 92 318 -193 387 233 68 30 chr11 13190320 13190453 -135593019 + L1MC5 LINE L1 7771 7908 -53 311 258 103 10 chr11 13190510 13190607 -135592865 + MIR SINE MIR 57 162 -100 879 190 17 35 chr11 13191197 13191371 -135592101 + AluSc SINE Alu 130 300 -9 413 260 62 23 chr11 13192636 13192813 -135590659 - L1ME4a LINE L1 -6 6115 5932 345 241 231 5 chr11 13192798 13193001 -135590471 - L1ME4a LINE L1 -11 6110 5862 * 289 279 122 45 chr11 13193160 13193447 -135590025 - L1ME4a LINE L1 -581 5581 5273 336 272 0 22 chr11 13193488 13193580 -135589892 + MIR SINE MIR 25 114 -148 469 301 84 10 chr11 13194307 13194510 -135588962 + MIR SINE MIR 33 250 -12 189 214 0 36 chr11 13194594 13194650 -135588822 + L2 LINE L2 2309 2362 -952 212 250 83 0 chr11 13194781 13194853 -135588619 + L2 LINE L2 2482 2559 -755 657 270 216 12 chr11 13194906 13195070 -135588402 + L2 LINE L2 2477 2606 -707 243 0 0 0 chr11 13195070 13195097 -135588375 + (CA)n Simple_repeat Simple_repeat 2 28 0 657 270 216 12 chr11 13195097 13195612 -135587860 + L2 LINE L2 2606 3303 -10 453 250 33 41 chr11 13196503 13196708 -135586764 - MIR SINE MIR -48 214 7 272 183 113 0 chr11 13198207 13198278 -135585194 - MER103 DNA DNA -79 87 9 462 263 34 34 chr11 13198425 13198604 -135584868 + MIR SINE MIR 9 187 -75 636 264 51 32 chr11 13198611 13198827 -135584645 - MIR SINE MIR -1 261 42 404 296 7 14 chr11 13199925 13200067 -135583405 - MER91B DNA MER1_type -42 148 8 413 310 76 5 chr11 13201256 13201440 -135582032 + MIR SINE MIR 10 206 -56 630 148 46 0 chr11 13201562 13201670 -135581802 + MER81 DNA DNA 1 113 -1 403 248 101 19 chr11 13201671 13201894 -135581578 - MLT1I LTR MaLR -33 376 93 1896 151 42 0 chr11 13202751 13203036 -135580436 + AluJo SINE Alu 1 297 -15 1772 170 7 10 chr11 13203205 13203494 -135579978 + AluJb SINE Alu 1 288 -24 643 263 26 0 chr11 13205047 13205237 -135578235 + MIR SINE MIR 67 261 -1 301 247 54 0 chr11 13206137 13206230 -135577242 + L1 LINE L1 4733 4830 -1316 26 74 0 0 chr11 13206377 13206431 -135577041 + AT_rich Low_complexity Low_complexity 1 54 0 419 324 96 18 chr11 13206566 13206838 -135576634 - L2 LINE L2 0 3313 3021 1867 256 205 12 chr11 13206887 13208019 -135575453 - L2 LINE L2 -781 2533 1139 455 302 49 24 chr11 13208168 13208373 -135575099 + L1ME LINE L1 5536 5745 -376 218 235 0 0 chr11 13208439 13208490 -135574982 - MIR SINE MIR -58 150 100 1877 129 52 0 chr11 13214909 13215180 -135568292 + AluSx SINE Alu 12 296 -16 271 278 150 32 chr11 13215690 13215877 -135567595 - MLT1L LTR MaLR -6 609 401 234 248 105 38 chr11 13215972 13216077 -135567395 - MLT1J LTR MaLR -302 209 98 349 325 160 37 chr11 13216200 13216581 -135566891 - L3 LINE CR1 -469 1108 681 205 241 17 0 chr11 13216560 13216618 -135566854 - L2 LINE L2 0 3313 3255 * 844 133 167 7 chr11 13216834 13216984 -135566488 + MER45A DNA AcHobo 5 178 0 198 276 17 0 chr11 13217055 13217113 -135566359 - L2 LINE L2 0 3313 3255 366 23 0 0 chr11 13217190 13217233 -135566239 + (TA)n Simple_repeat Simple_repeat 1 43 0 204 281 116 33 chr11 13217670 13217791 -135565681 - L3 LINE CR1 -1269 308 178 222 172 32 151 chr11 13218941 13219034 -135564438 + MER5B DNA MER1_type 2 83 -95 248 187 80 13 chr11 13219089 13219164 -135564308 + L3 LINE CR1 1429 1508 -69 351 0 0 0 chr11 13219345 13219384 -135564088 + (CA)n Simple_repeat Simple_repeat 2 40 0 218 358 58 7 chr11 13220291 13220428 -135563044 - MIR SINE MIR -70 192 49 2166 138 0 13 chr11 13221481 13221793 -135561679 + AluSx SINE Alu 1 308 -4 918 165 82 0 chr11 13221807 13221989 -135561483 + MIR SINE MIR 41 237 -25 207 298 99 28 chr11 13222332 13222473 -135560999 - L2 LINE L2 -220 3052 2902 263 188 101 0 chr11 13222757 13222826 -135560646 - MER5B DNA MER1_type -20 158 83 963 144 51 20 chr11 13222932 13223128 -135560344 - MER33 DNA MER1_type -262 62 1 633 284 255 28 chr11 13224113 13224874 -135558598 + L2 LINE L2 1862 2795 -519 409 300 77 0 chr11 13225117 13225247 -135558225 + L2 LINE L2 3121 3260 -12 302 362 60 39 chr11 13225254 13225903 -135557569 + L2 LINE L2 2315 2977 -337 2016 147 0 3 chr11 13226576 13226876 -135556596 + AluJb SINE Alu 1 299 -13 402 143 0 0 chr11 13227157 13227213 -135556259 - MER3 DNA MER1_type -153 56 1 364 313 26 0 chr11 13227213 13227328 -135556144 - MIR3 SINE MIR -48 160 43 1667 184 3 20 chr11 13227563 13227857 -135555615 - AluJb SINE Alu -23 289 1 317 317 159 48 chr11 13228508 13229069 -135554403 + L2 LINE L2 2334 2956 -358 268 248 229 9 chr11 13229134 13229239 -135554233 + L2 LINE L2 3143 3270 -2 567 309 180 25 chr11 13231181 13232096 -135551376 + L2 LINE L2 2133 3188 -84 950 176 96 5 chr11 13233161 13233348 -135550124 + MER58A DNA MER1_type 20 223 -1 341 261 219 0 chr11 13234561 13234680 -135548792 + MIR SINE MIR 12 156 -106 5478 159 81 49 chr11 13235599 13235852 -135547620 + Charlie1a DNA MER1_type 34 278 -2483 1617 177 7 18 chr11 13235852 13236135 -135547337 + AluJo SINE Alu 1 280 -32 5478 159 81 49 chr11 13236135 13237248 -135546224 + Charlie1a DNA MER1_type 278 1443 -12 1926 135 21 0 chr11 13241719 13242007 -135541465 - AluSx SINE Alu -18 294 1 784 211 28 64 chr11 13242485 13242631 -135540841 - MER58A DNA MER1_type -2198 222 85 2026 117 38 0 chr11 13242631 13242921 -135540551 - AluSx SINE Alu -11 301 1 784 211 28 64 chr11 13242921 13242992 -135540480 - MER58A DNA MER1_type -2335 85 13 18166 28 0 1 chr11 13243324 13246270 -135537202 - L1PA2 LINE L1 -109 6046 3102 1075 234 30 0 chr11 13246498 13246733 -135536739 + MIR SINE MIR 1 242 -20 323 261 34 0 chr11 13247355 13247443 -135536029 + MLT1J1 LTR MaLR 92 182 -264 1985 110 55 14 chr11 13247572 13247862 -135535610 - AluSx SINE Alu -10 302 1 282 200 35 24 chr11 13247871 13247956 -135535516 + MLT1J1 LTR MaLR 353 438 -8 243 218 0 0 chr11 13248266 13248321 -135535151 + (CATATA)n Simple_repeat Simple_repeat 1 55 0 241 188 25 25 chr11 13248334 13248414 -135535058 + (TA)n Simple_repeat Simple_repeat 1 80 0 469 306 66 31 chr11 13248842 13249419 -135534053 + L1M4 LINE L1 4061 4656 -1490 438 231 6 99 chr11 13249540 13249722 -135533750 + L1M3e LINE L1 1 165 -6865 23 0 0 0 chr11 13251130 13251153 -135532319 + AT_rich Low_complexity Low_complexity 1 23 0 26265 92 7 14 chr11 13251360 13255285 -135528187 + L1PA5 LINE L1 11 3907 -2239 6805 64 3 12 chr11 13255285 13256586 -135526886 + L1PA5 LINE L1 4653 5945 -209 4079 80 267 20 chr11 13256586 13257245 -135526227 + LTR12 LTR ERV1 1 822 -4 6805 64 3 12 chr11 13257245 13257451 -135526021 + L1PA5 LINE L1 5945 6151 -3 343 264 23 16 chr11 13257474 13257603 -135525869 + L1M4 LINE L1 5030 5159 -987 5037 89 22 0 chr11 13257981 13258809 -135524663 - pTR5 LTR ERV1 0 2468 1520 1346 134 26 35 chr11 13258895 13259127 -135524345 - MER30 DNA MER1_type 0 230 1 199 323 217 25 chr11 13259253 13259659 -135523813 - L2 LINE L2 -1 3312 2829 289 299 0 0 chr11 13260511 13260588 -135522884 - L1MA10 LINE L1 -68 6266 6190 1865 166 3 10 chr11 13260982 13261283 -135522189 + AluJb SINE Alu 1 299 -13 353 216 173 15 chr11 13261319 13261579 -135521893 + L1M2 LINE L1 5263 5553 -747 259 389 37 9 chr11 13262361 13262469 -135521003 + L2 LINE L2 3110 3220 -52 298 340 10 0 chr11 13262474 13262574 -135520898 + L2 LINE L2 2909 3009 -263 58 0 0 0 chr11 13262649 13262707 -135520765 + AT_rich Low_complexity Low_complexity 1 58 0 557 162 118 7 chr11 13262734 13262870 -135520602 - MER3 DNA MER1_type -58 151 1 504 301 7 22 chr11 13262964 13263100 -135520372 + L2 LINE L2 3180 3313 0 497 144 123 55 chr11 13264114 13264260 -135519212 - MER53 DNA DNA -33 156 1 260 231 0 19 chr11 13264267 13264319 -135519153 - MIR SINE MIR -142 66 16 355 349 72 25 chr11 13264691 13264926 -135518546 - MIR SINE MIR -15 247 2 989 180 19 167 chr11 13266022 13266333 -135517139 + AluJo SINE Alu 1 265 -47 213 39 0 0 chr11 13266336 13266362 -135517110 + (TAA)n Simple_repeat Simple_repeat 1 26 0 1920 149 0 0 chr11 13267158 13267447 -135516025 + AluJb SINE Alu 1 289 -23 1340 142 77 8 chr11 13267540 13267801 -135515671 + L1MA10 LINE L1 6049 6327 -7 1917 167 0 13 chr11 13268479 13268779 -135514693 - AluJo SINE Alu -11 301 6 203 267 83 0 chr11 13269034 13269094 -135514378 + L2 LINE L2 3249 3313 0 4475 120 49 0 chr11 13269346 13270356 -135513116 + L1PA12 LINE L1 4937 5993 -175 1402 204 60 11 chr11 13270490 13270774 -135512698 + AluJo SINE Alu 1 298 -14 1017 329 148 19 chr11 13270882 13271414 -135512058 - L3 LINE CR1 -9 1568 968 335 204 118 112 chr11 13271876 13272028 -135511444 + MIR SINE MIR 109 261 -1 30 27 0 0 chr11 13272042 13272079 -135511393 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr11 13273076 13273104 -135510368 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 13274806 13274828 -135508644 + AT_rich Low_complexity Low_complexity 1 22 0 290 24 48 0 chr11 13275519 13275561 -135507911 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 23 0 0 0 chr11 13275737 13275760 -135507712 + AT_rich Low_complexity Low_complexity 1 23 0 899 235 75 112 chr11 13276200 13276974 -135506498 + L1ME LINE L1 305 1049 -5021 929 224 76 32 chr11 13276975 13277319 -135506153 + L1ME1 LINE L1 5808 6166 0 250 258 162 12 chr11 13277914 13278081 -135505391 + L1MC/D LINE L1 5703 5894 -1914 201 167 0 0 chr11 13278111 13278147 -135505325 + A-rich Low_complexity Low_complexity 1 36 0 294 314 98 0 chr11 13278498 13278600 -135504872 + L2 LINE L2 3145 3256 -16 2349 107 0 0 chr11 13278620 13278929 -135504543 + AluSg SINE Alu 1 309 -1 726 200 0 21 chr11 13279419 13279564 -135503908 + FLAM_A SINE Alu 1 142 0 37 23 0 0 chr11 13279564 13279608 -135503864 + AT_rich Low_complexity Low_complexity 1 44 0 220 345 62 9 chr11 13279608 13279721 -135503751 - L2 LINE L2 0 3313 3195 2170 104 3 10 chr11 13279735 13280061 -135503411 - AluSq SINE Alu 0 324 1 234 143 0 0 chr11 13280858 13280893 -135502579 + MER3 DNA MER1_type 24 58 -151 365 310 22 15 chr11 13281068 13281336 -135502136 + L1MC4a LINE L1 4777 5046 -1100 296 173 92 75 chr11 13281465 13281638 -135501834 + L1MC4a LINE L1 5254 5429 -2379 709 253 161 82 chr11 13281642 13281727 -135501745 + L1MC4a LINE L1 5476 5553 -2255 2160 131 0 16 chr11 13281727 13282052 -135501420 + AluJb SINE Alu 1 312 0 709 253 161 82 chr11 13282052 13282610 -135500862 + L1MC4a LINE L1 5553 6170 -1638 824 203 0 0 chr11 13282869 13283002 -135500470 + FLAM_A SINE Alu 1 133 0 243 234 63 9 chr11 13283137 13283248 -135500224 - Charlie7 DNA MER1_type -69 2543 2427 185 277 68 95 chr11 13283352 13283500 -135499972 + MIR3 SINE MIR 38 181 -27 2539 11 0 7 chr11 13283874 13284206 -135499266 - AluYa5 SINE Alu 0 330 1 335 315 76 22 chr11 13286094 13286278 -135497194 + Charlie8 DNA MER1_type 52 245 -2172 298 316 77 47 chr11 13288696 13288930 -135494542 - L2 LINE L2 -86 3186 2946 1355 144 166 15 chr11 13289660 13289986 -135493486 + MSTA LTR MaLR 1 375 -53 2283 92 0 0 chr11 13290293 13290587 -135492885 + AluY SINE Alu 1 294 -17 686 108 100 25 chr11 13291058 13291178 -135492294 + FLAM_C SINE Alu 2 130 -3 2333 86 0 7 chr11 13291314 13291615 -135491857 - AluSx SINE Alu -11 301 3 231 88 0 0 chr11 13291630 13291664 -135491808 + (T)n Simple_repeat Simple_repeat 1 34 0 723 182 34 140 chr11 13291988 13292314 -135491158 - MER65-int LTR ERV1 -1922 2958 2009 21 36 0 0 chr11 13292314 13292342 -135491130 + AT_rich Low_complexity Low_complexity 1 28 0 264 197 0 0 chr11 13292453 13292514 -135490958 - MER65-int LTR ERV1 -2378 2493 2433 791 143 13 164 chr11 13292624 13292855 -135490617 - MER65-int LTR ERV1 -2872 3459 3264 1966 167 3 0 chr11 13292986 13293285 -135490187 + AluJo SINE Alu 13 312 0 754 211 0 0 chr11 13293325 13293458 -135490014 - FLAM_C SINE Alu 0 133 1 1163 160 19 61 chr11 13293471 13293734 -135489738 - MER65-int LTR ERV1 -3116 3215 2964 1201 194 87 85 chr11 13293734 13294240 -135489232 + MER84 LTR ERV1 1 507 0 26784 92 19 21 chr11 13294246 13295552 -135487920 + MER84-int LTR ERV1 11 1318 -3636 7294 50 9 0 chr11 13295552 13296493 -135486979 + L1PA8 LINE L1 5221 6169 -3 26784 92 19 21 chr11 13296493 13299864 -135483608 + MER84-int LTR ERV1 1318 4793 -161 2087 146 24 3 chr11 13299901 13300237 -135483235 - MER61A LTR ERV1 0 343 1 752 189 78 28 chr11 13300242 13300490 -135482982 + L1M4 LINE L1 5222 5480 -704 282 93 0 0 chr11 13300494 13300537 -135482935 + Alu SINE Alu 1 43 -258 4076 18 0 0 chr11 13300637 13301128 -135482344 + L1PA2 LINE L1 5661 6151 -4 2082 135 48 28 chr11 13301153 13301546 -135481926 - MSTA LTR MaLR -27 401 1 3202 203 41 22 chr11 13301546 13302426 -135481046 + L1 LINE L1 3791 4687 -1459 387 0 0 0 chr11 13302434 13302477 -135480995 + (TTTTA)n Simple_repeat Simple_repeat 1 43 0 8046 170 26 5 chr11 13302482 13305094 -135478378 - L1PA16 LINE L1 -32 6134 3490 868 224 50 12 chr11 13305093 13305114 -135478358 + L1MC4a LINE L1 4679 4698 -1448 * 3284 21 0 3 chr11 13305114 13305533 -135477939 + L1PA2 LINE L1 5769 6155 0 868 224 50 12 chr11 13305533 13305770 -135477702 + L1MC4a LINE L1 4698 4947 -1199 1352 244 19 27 chr11 13306751 13307120 -135476352 - MLT1F LTR MaLR 0 542 217 4375 173 43 25 chr11 13307148 13308014 -135475458 - L1MB8 LINE L1 0 6178 5282 2003 113 18 0 chr11 13308014 13308324 -135475148 - AluSx SINE Alu 0 316 2 4375 173 43 25 chr11 13308324 13308654 -135474818 - L1MB8 LINE L1 -896 5282 4959 322 288 92 16 chr11 13308660 13308850 -135474622 - MLT1G1 LTR MaLR -393 137 1 222 322 0 23 chr11 13308983 13309070 -135474402 + MIR SINE MIR 149 233 -29 1656 241 89 45 chr11 13309075 13309091 -135474381 + L1MC4a LINE L1 5321 5335 -965 2579 117 5 5 chr11 13309091 13309466 -135474006 + THE1C LTR MaLR 1 375 0 1656 241 89 45 chr11 13309466 13309765 -135473707 + L1MC4a LINE L1 5335 5107 -1193 2317 127 28 19 chr11 13309765 13310126 -135473346 + THE1B LTR MaLR 1 364 0 1656 241 89 45 chr11 13310126 13310492 -135472980 + L1MC4a LINE L1 5106 5454 -846 * 6041 89 3 12 chr11 13310490 13311687 -135471785 + L1PA8A LINE L1 4942 6128 -3 384 284 66 51 chr11 13311763 13312020 -135471452 + L1MC5 LINE L1 7668 7928 -33 331 68 0 0 chr11 13312117 13312161 -135471311 + MLT2D LTR ERVL 371 414 0 2338 74 0 46 chr11 13312244 13312570 -135470902 - AluY SINE Alu 0 311 1 511 298 59 41 chr11 13313572 13313911 -135469561 - L2 LINE L2 -4 3309 2965 621 269 41 101 chr11 13313948 13314264 -135469208 - L2 LINE L2 -454 2860 2564 288 272 179 5 chr11 13314640 13314824 -135468648 - MARNA DNA Mariner -205 381 166 352 289 66 25 chr11 13315027 13315148 -135468324 + L2 LINE L2 3116 3241 -31 1102 234 46 3 chr11 13315454 13315736 -135467736 + LTR16A1 LTR ERVL 160 453 -4 229 214 18 0 chr11 13315938 13315994 -135467478 + MLT1K LTR MaLR 525 581 -7 180 111 0 0 chr11 13316293 13316320 -135467152 + (A)n Simple_repeat Simple_repeat 1 27 0 2145 135 0 7 chr11 13316632 13316929 -135466543 - AluSx SINE Alu -16 296 2 671 361 121 29 chr11 13317468 13317749 -135465723 + L2 LINE L2 2245 2499 -814 759 175 7 36 chr11 13317749 13317886 -135465586 - FLAM_A SINE Alu 0 133 1 671 361 121 29 chr11 13317886 13318577 -135464895 + L2 LINE L2 2499 3313 0 225 279 99 13 chr11 13318732 13318853 -135464619 + MIR SINE MIR 16 152 -61 192 315 0 101 chr11 13318834 13318854 -135464618 + L2 LINE L2 3166 3186 -86 * 1914 154 3 10 chr11 13318854 13319165 -135464307 + AluJo SINE Alu 1 309 -3 192 315 0 101 chr11 13319165 13319233 -135464239 + L2 LINE L2 3186 3245 -27 281 128 13 39 chr11 13319321 13319399 -135464073 + (TA)n Simple_repeat Simple_repeat 2 77 0 528 215 25 0 chr11 13319484 13319605 -135463867 + L1M4 LINE L1 4680 4803 -1343 * 29176 112 17 68 chr11 13319600 13326013 -135457459 - L1PA8 LINE L1 -99 6073 1 237 116 70 0 chr11 13326030 13326073 -135457399 + L1ME LINE L1 5722 5767 -399 1052 70 0 0 chr11 13326119 13326247 -135457225 + AluY SINE Alu 176 303 -8 220 319 106 0 chr11 13326336 13326449 -135457023 - MIR SINE MIR -63 145 21 193 240 29 19 chr11 13327194 13327266 -135456206 - MIR SINE MIR -94 168 97 2656 109 3 8 chr11 13327463 13327840 -135455632 + THE1C LTR MaLR 1 375 0 6758 178 36 91 chr11 13327842 13328263 -135455209 + THE1C-int LTR MaLR 3 445 -1206 2311 107 0 19 chr11 13328263 13328580 -135454892 + AluY SINE Alu 1 311 0 6758 178 36 91 chr11 13328580 13329905 -135453567 + THE1C-int LTR MaLR 445 1651 0 2253 110 84 35 chr11 13329905 13330250 -135453222 + THE1B LTR MaLR 1 362 -2 550 167 10 29 chr11 13330250 13330352 -135453120 + THE1C LTR MaLR 46 145 -230 14663 169 19 8 chr11 13330773 13334555 -135448917 - L1PB2 LINE L1 -3 6205 2381 1305 136 0 5 chr11 13334555 13334739 -135448733 + AluJb SINE Alu 1 183 -129 2244 139 124 2 chr11 13334769 13335255 -135448217 + L1PBa LINE L1 2499 3043 -3819 862 147 0 8 chr11 13335260 13335389 -135448083 - AluSp/q SINE Alu -22 291 164 411 103 0 0 chr11 13335389 13335447 -135448025 - THE1B LTR MaLR -306 58 1 1942 95 62 7 chr11 13335449 13335754 -135447718 + L1PBa LINE L1 2120 2441 -4422 1058 159 0 0 chr11 13335755 13335906 -135447566 - AluSq/x SINE Alu -161 151 1 5963 140 43 24 chr11 13336013 13336319 -135447153 - L1PB2 LINE L1 -4423 1781 1482 2215 149 33 30 chr11 13336319 13336682 -135446790 + THE1B LTR MaLR 1 364 0 12472 103 1 0 chr11 13336682 13338260 -135445212 + THE1B-int LTR MaLR 1 1580 0 2238 138 33 33 chr11 13338262 13338624 -135444848 + THE1B LTR MaLR 3 364 0 5963 140 43 24 chr11 13338624 13340052 -135443420 - L1PB2 LINE L1 -4722 1482 8 * 7977 211 12 7 chr11 13340023 13341652 -135441820 - L1PBa LINE L1 -5223 1640 4 762 262 30 10 chr11 13341991 13342193 -135441279 + MIR SINE MIR 2 207 -55 1823 256 34 15 chr11 13342221 13342749 -135440723 - MER74B LTR ERVL -10 612 75 1536 167 84 14 chr11 13344297 13344572 -135438900 + AluJb SINE Alu 1 294 -18 201 74 0 0 chr11 13344579 13344606 -135438866 + (GGAGAA)n Simple_repeat Simple_repeat 5 31 0 2367 233 41 24 chr11 13344963 13345422 -135438050 + L1M4 LINE L1 4603 5078 -1068 2390 125 48 14 chr11 13345422 13345774 -135437698 - THE1B LTR MaLR 0 364 1 2367 233 41 24 chr11 13345774 13345979 -135437493 + L1M4 LINE L1 5078 5278 -868 43215 38 22 1 chr11 13346001 13352019 -135431453 - L1PA3 LINE L1 0 6155 13 397 173 37 0 chr11 13352018 13352099 -135431373 + L1M LINE L1 5269 5352 -832 * 227 383 39 7 chr11 13352682 13352836 -135430636 + LTR16C LTR ERVL 226 384 -107 3001 112 75 17 chr11 13354130 13354612 -135428860 - MER9 LTR ERVK -1 510 1 1977 68 11 0 chr11 13354867 13355129 -135428343 + L1P2 LINE L1 5493 5726 -428 423 286 30 14 chr11 13355245 13355391 -135428081 - MER5A DNA MER1_type -39 139 4 215 334 24 10 chr11 13355581 13355751 -135427721 + MIR SINE MIR 30 243 -19 324 331 66 18 chr11 13355805 13355971 -135427501 + MIR3 SINE MIR 14 187 -21 2509 84 0 0 chr11 13356970 13357278 -135426194 - AluSc SINE Alu 0 309 2 1796 168 10 3 chr11 13357611 13357914 -135425558 - AluJo SINE Alu -7 305 1 235 174 0 0 chr11 13357916 13357962 -135425510 - L1M4 LINE L1 -3009 3137 3092 258 258 113 13 chr11 13358482 13358633 -135424839 + L1ME4a LINE L1 5952 6117 -4 693 263 134 0 chr11 13358639 13358833 -135424639 - MIR SINE MIR -3 259 40 2006 174 0 0 chr11 13358833 13359138 -135424334 - AluJb SINE Alu -7 305 1 3621 154 73 24 chr11 13360118 13360799 -135422673 + L1MB2 LINE L1 5449 6163 -8 19475 61 3 0 chr11 13360893 13363761 -135419711 + L1PA6 LINE L1 11 2870 -3284 19475 67 4 2 chr11 13363761 13366964 -135416508 + L1PA6 LINE L1 2945 6154 0 19475 61 3 0 chr11 13366964 13367005 -135416467 + L1PA6 LINE L1 2870 6154 0 321 306 92 43 chr11 13367439 13367785 -135415687 - L2 LINE L2 -1201 2113 1751 914 279 93 64 chr11 13367843 13368737 -135414735 - L1MC4a LINE L1 -1635 6173 5254 353 348 40 54 chr11 13369085 13369381 -135414091 - L2 LINE L2 -1898 1416 1125 22219 147 28 4 chr11 13369508 13373026 -135410446 + L1MA3 LINE L1 8 3610 -3955 26877 165 20 20 chr11 13373031 13374731 -135408741 + L1PA10 LINE L1 10 1709 -4774 2836 19 0 3 chr11 13374731 13375044 -135408428 + AluYb8 SINE Alu 1 312 -6 26877 165 20 20 chr11 13375044 13379778 -135403694 + L1PA10 LINE L1 1709 6470 -13 8395 174 48 19 chr11 13380113 13381636 -135401836 + L1MA3 LINE L1 3565 5042 -2682 2046 128 7 7 chr11 13381636 13381940 -135401532 - AluSx SINE Alu -8 304 1 8395 174 48 19 chr11 13381940 13381995 -135401477 + L1MA3 LINE L1 5042 5094 -2630 2308 91 0 14 chr11 13381995 13382292 -135401180 + AluY SINE Alu 1 293 -18 8395 174 48 19 chr11 13382292 13384634 -135398838 + L1MA3 LINE L1 5094 7724 0 757 303 49 67 chr11 13384756 13385311 -135398161 - L2 LINE L2 -2401 913 369 713 252 9 52 chr11 13385701 13385911 -135397561 - MIR SINE MIR -47 215 15 1792 153 0 3 chr11 13386755 13387037 -135396435 + AluJb SINE Alu 5 285 -27 2264 110 7 3 chr11 13388842 13389150 -135394322 + AluSx SINE Alu 1 309 -3 255 79 0 0 chr11 13389515 13389553 -135393919 + (GA)n Simple_repeat Simple_repeat 1 38 0 274 371 81 8 chr11 13389582 13389841 -135393631 - LTR16C LTR ERVL -14 477 200 2407 235 37 14 chr11 13390402 13391134 -135392338 - L1M4 LINE L1 -794 5352 4604 1413 197 95 0 chr11 13391487 13391818 -135391654 - AluSg SINE Alu 0 357 1 271 352 97 22 chr11 13392066 13392333 -135391139 + L2 LINE L2 1859 2145 -1169 1999 149 0 0 chr11 13392591 13392901 -135390571 + AluSx SINE Alu 1 310 0 971 417 44 14 chr11 13393691 13394120 -135389352 + MER74B LTR ERVL 75 516 -106 734 287 31 14 chr11 13394217 13394440 -135389032 - MIR SINE MIR -35 227 1 312 276 301 4 chr11 13395305 13395544 -135387928 + L2 LINE L2 1318 1627 -1687 783 264 9 35 chr11 13395571 13395798 -135387674 + L2 LINE L2 2260 2480 -834 6928 113 20 19 chr11 13395811 13397494 -135385978 - L1MA1 LINE L1 -4 6298 4600 1084 297 145 16 chr11 13397495 13398194 -135385278 + L2 LINE L2 2464 3263 -50 354 121 0 0 chr11 13398782 13398840 -135384632 - MER58A DNA MER1_type -6 218 161 384 224 51 0 chr11 13398842 13398940 -135384532 - MER58A DNA MER1_type -4 103 1 258 282 13 0 chr11 13398957 13399035 -135384437 + MLT1J LTR MaLR 69 147 -364 1926 169 20 0 chr11 13399062 13399364 -135384108 - AluJb SINE Alu -4 308 1 233 216 0 20 chr11 13399368 13399419 -135384053 - MER20 DNA MER1_type 0 219 170 2359 143 46 29 chr11 13399427 13399904 -135383568 - L1MB7 LINE L1 -16 6168 5684 1173 160 10 0 chr11 13399906 13400106 -135383366 - L1MB7 LINE L1 -561 5623 5422 346 285 31 0 chr11 13400104 13400234 -135383238 - L1ME LINE L1 -381 5789 5656 * 992 239 44 10 chr11 13400249 13400577 -135382895 - L1ME LINE L1 -595 5569 5232 750 278 112 42 chr11 13401885 13402460 -135381012 - L1ME LINE L1 -1058 5088 4463 2181 114 0 16 chr11 13402460 13402767 -135380705 - AluSx SINE Alu -10 302 1 750 278 112 42 chr11 13402767 13402828 -135380644 - L1ME LINE L1 -1683 4463 4408 758 273 123 0 chr11 13402911 13403131 -135380341 - MIR SINE MIR -1 261 15 216 0 0 0 chr11 13403139 13403163 -135380309 + (TC)n Simple_repeat Simple_repeat 2 25 0 25 0 0 0 chr11 13403960 13403985 -135379487 + AT_rich Low_complexity Low_complexity 1 25 0 237 300 100 20 chr11 13404412 13404485 -135378987 - L2 LINE L2 0 3272 3187 1303 237 111 8 chr11 13404485 13404844 -135378628 - MSTD LTR MaLR 0 396 1 237 300 100 20 chr11 13404844 13404870 -135378602 - L2 LINE L2 -84 3188 3165 12932 209 11 4 chr11 13405303 13409138 -135374334 - L1PA15 LINE L1 0 6816 2998 575 115 11 0 chr11 13409140 13409227 -135374245 + 5S rRNA rRNA 1 88 -33 4390 231 29 35 chr11 13409228 13410485 -135372987 - L1PA15 LINE L1 -3785 3012 1748 2303 100 3 0 chr11 13410485 13410785 -135372687 + AluSg SINE Alu 1 301 -9 4390 231 29 35 chr11 13410785 13411779 -135371693 - L1PA15 LINE L1 -5049 1748 412 1933 259 29 2 chr11 13411886 13412342 -135371130 - L1PA15 LINE L1 -6319 468 1 21 0 0 0 chr11 13412355 13412376 -135371096 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr11 13412582 13412607 -135370865 + (TA)n Simple_repeat Simple_repeat 1 25 0 529 326 81 8 chr11 13412719 13412955 -135370517 - MIR SINE MIR -3 259 7 452 255 149 37 chr11 13413328 13413489 -135369983 - MIR SINE MIR -79 183 5 2201 118 0 0 chr11 13413674 13413971 -135369501 - AluSq SINE Alu -16 297 1 582 134 41 0 chr11 13414106 13414203 -135369269 - AluSx SINE Alu -3 309 209 41290 42 2 13 chr11 13414218 13420432 -135363040 - L1PA4 LINE L1 0 6155 14 1374 166 0 22 chr11 13420432 13420661 -135362811 - AluSx SINE Alu -88 224 1 630 285 115 17 chr11 13420938 13421408 -135362064 - L1ME4a LINE L1 -295 5826 5374 1965 152 7 0 chr11 13421533 13421830 -135361642 - AluJb SINE Alu -13 299 1 2780 157 18 33 chr11 13421833 13422405 -135361067 - L1MB5 LINE L1 0 6174 5612 1203 222 30 22 chr11 13422405 13422770 -135360702 - L1MB5 LINE L1 -1403 4743 4376 1354 149 0 0 chr11 13422770 13422964 -135360508 - AluSx SINE Alu -118 194 1 1210 196 38 33 chr11 13422964 13423332 -135360140 - L1MB5 LINE L1 -2461 3685 3316 1407 248 104 11 chr11 13423337 13423797 -135359675 - L2 LINE L2 -1124 2190 1688 181 194 119 45 chr11 13424071 13424138 -135359334 + MER5A DNA MER1_type 40 111 -78 2566 110 72 5 chr11 13424726 13425127 -135358345 - MSTA LTR MaLR 0 428 1 21 36 0 0 chr11 13426155 13426183 -135357289 + AT_rich Low_complexity Low_complexity 1 28 0 496 247 89 0 chr11 13426791 13426949 -135356523 + MER96 DNA MER1_type 1 172 -3 1284 227 45 108 chr11 13427074 13427650 -135355822 + MER34 LTR ERV1 1 540 -2 3718 153 67 33 chr11 13428830 13429747 -135353725 - L1MB8 LINE L1 -17 6161 5202 960 196 0 0 chr11 13429750 13429908 -135353564 - AluJb SINE Alu -13 299 142 5935 206 77 31 chr11 13429913 13431480 -135351992 - L1MB8 LINE L1 -926 5220 3582 929 243 158 25 chr11 13431790 13432239 -135351233 - HAL1b LINE L1 -605 743 235 602 225 8 47 chr11 13432707 13432836 -135350636 - FLAM_A SINE Alu -8 125 2 557 247 100 6 chr11 13432949 13433119 -135350353 - MLT1L LTR MaLR -2 613 428 823 225 25 50 chr11 13433412 13433612 -135349860 + MLT1A1 LTR MaLR 171 365 0 243 52 17 190 chr11 13433702 13433760 -135349712 - MLT2D LTR ERVL 0 414 367 350 167 0 17 chr11 13433770 13433830 -135349642 + MER8 DNA MER2_type 2 60 -179 850 201 25 10 chr11 13433872 13434071 -135349401 + L1MD3 LINE L1 6904 7105 -890 505 229 0 0 chr11 13434081 13434177 -135349295 + MLT1F1 LTR MaLR 35 130 -437 3200 160 10 27 chr11 13434179 13434766 -135348706 + L1MD3 LINE L1 7410 7986 -9 3745 63 7 2 chr11 13435010 13435452 -135348020 - MLT2A1 LTR ERVL 0 444 1 2300 130 133 5 chr11 13435604 13435981 -135347491 - MSTA LTR MaLR -3 425 1 2139 175 66 31 chr11 13436815 13437238 -135346234 - LTR47A LTR ERVL -14 438 1 1040 203 25 98 chr11 13437239 13437651 -135345821 - MER4B-int LTR ERV1 -258 4865 4636 2148 125 26 0 chr11 13437706 13438011 -135345461 - AluSq SINE Alu 0 313 1 1685 104 16 108 chr11 13438011 13438327 -135345145 - MER4B-int LTR ERV1 -1509 5249 4963 2698 198 43 11 chr11 13438350 13438886 -135344586 - MER4B-int LTR ERV1 -1905 4853 4301 880 166 8 17 chr11 13438883 13439067 -135344405 - MER4B-int LTR ERV1 -2483 4275 1182 * 2099 138 10 3 chr11 13439076 13439381 -135344091 - AluSx SINE Alu -1 311 5 411 227 0 0 chr11 13439583 13439711 -135343761 + G-rich Low_complexity Low_complexity 1 128 0 22 0 0 0 chr11 13440421 13440443 -135343029 + GC_rich Low_complexity Low_complexity 1 22 0 737 211 21 0 chr11 13441579 13441721 -135341751 - FRAM SINE Alu -30 146 2 1894 123 9 28 chr11 13441763 13442081 -135341391 - AluSx SINE Alu 0 312 1 1939 159 94 74 chr11 13442672 13442827 -135340645 - MLT1C LTR MaLR 0 467 317 2405 125 125 10 chr11 13442827 13443211 -135340261 + MSTA LTR MaLR 1 428 0 1939 159 94 74 chr11 13443211 13443513 -135339959 - MLT1C LTR MaLR -150 317 1 26 0 0 0 chr11 13444134 13444160 -135339312 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr11 13444276 13444299 -135339173 + AT_rich Low_complexity Low_complexity 1 23 0 262 308 14 98 chr11 13444542 13444685 -135338787 + MLT1H1 LTR MaLR 9 139 -416 23 0 0 0 chr11 13445195 13445218 -135338254 + AT_rich Low_complexity Low_complexity 1 23 0 2355 88 0 0 chr11 13445260 13445554 -135337918 + AluY SINE Alu 1 294 -17 9345 62 2 14 chr11 13445562 13446742 -135336730 + L1P LINE L1 1 1165 -4981 5982 138 5 26 chr11 13446846 13447021 -135336451 - MER4B-int LTR ERV1 -2728 4030 3853 2443 118 128 8 chr11 13447021 13447403 -135336069 + MSTA LTR MaLR 1 428 0 5982 138 5 26 chr11 13447403 13448197 -135335275 - MER4B-int LTR ERV1 -2905 3853 3081 226 278 0 44 chr11 13448207 13448297 -135335175 - L1MC4 LINE L1 -1342 6700 6615 471 213 21 7 chr11 13448301 13448442 -135335030 + (TATATG)n Simple_repeat Simple_repeat 4 146 0 22 35 0 0 chr11 13448475 13448504 -135334968 + AT_rich Low_complexity Low_complexity 1 29 0 837 185 0 60 chr11 13448514 13448740 -135334732 - AluJb SINE Alu -31 281 2 303 93 0 0 chr11 13448780 13448823 -135334649 + (TCC)n Simple_repeat Simple_repeat 3 45 0 1392 183 11 49 chr11 13448823 13449108 -135334364 - AluJo SINE Alu -38 274 1 1471 205 45 45 chr11 13449120 13449663 -135333809 - LTR49-int LTR ERV1 -1950 2936 2559 37036 97 12 12 chr11 13449722 13455873 -135327599 + L1PA6 LINE L1 11 6154 0 2072 225 96 78 chr11 13455935 13456001 -135327471 - LTR49-int LTR ERV1 -2594 2286 2223 2199 129 76 15 chr11 13456001 13456342 -135327130 - THE1B LTR MaLR 0 364 3 2072 225 96 78 chr11 13456342 13456962 -135326510 - LTR49-int LTR ERV1 -2657 2223 1616 2690 145 41 5 chr11 13456962 13457375 -135326097 + MSTA LTR MaLR 1 428 0 9798 157 40 22 chr11 13457375 13458997 -135324475 + MSTA-int LTR MaLR 1 1651 0 2553 124 70 5 chr11 13458997 13459399 -135324073 + MSTA LTR MaLR 1 428 0 2072 225 96 78 chr11 13459399 13459548 -135323924 - LTR49-int LTR ERV1 -3263 1617 751 1713 163 37 59 chr11 13459923 13460298 -135323174 - LTR47A LTR ERVL -2 450 84 1968 127 0 43 chr11 13460298 13460597 -135322875 - AluSx SINE Alu -6 306 21 205 183 33 67 chr11 13460678 13460738 -135322734 + L2 LINE L2 3210 3267 -5 207 332 106 68 chr11 13461100 13461365 -135322107 + L2 LINE L2 2825 3099 -173 2145 143 0 0 chr11 13461404 13461712 -135321760 - AluSx SINE Alu -4 308 1 1005 170 0 23 chr11 13461769 13461940 -135321532 - FRAM SINE Alu -12 164 1 445 67 22 67 chr11 13461942 13462031 -135321441 - Charlie5 DNA MER1_type -56 2556 2472 2306 98 0 3 chr11 13463482 13463778 -135319694 + AluSg SINE Alu 1 295 -15 2124 110 0 10 chr11 13463785 13464077 -135319395 + AluY SINE Alu 1 289 -22 522 288 27 27 chr11 13464163 13464347 -135319125 + MIR SINE MIR 8 191 -71 196 250 130 60 chr11 13465840 13465940 -135317532 + L2 LINE L2 3153 3259 -13 359 251 56 4 chr11 13466250 13466396 -135317076 - L1ME3 LINE L1 0 6164 6005 195 42 0 0 chr11 13467195 13467219 -135316253 + (CGG)n Simple_repeat Simple_repeat 3 26 0 25 65 0 0 chr11 13467371 13467417 -135316055 + GC_rich Low_complexity Low_complexity 1 46 0 737 211 21 0 chr11 13468555 13468697 -135314775 - FRAM SINE Alu -30 146 2 1916 125 6 28 chr11 13468739 13469058 -135314414 - AluSx SINE Alu 0 312 1 193 333 32 32 chr11 13469615 13469741 -135313731 - L2 LINE L2 -189 3083 2958 579 208 213 11 chr11 13470073 13470256 -135313216 - MIR SINE MIR 0 262 43 315 282 13 0 chr11 13470247 13470325 -135313147 - L2 LINE L2 -6 3266 3188 * 1298 178 45 25 chr11 13470786 13471028 -135312444 + AluJb SINE Alu 52 298 -14 534 254 84 33 chr11 13471770 13471983 -135311489 - MIR SINE MIR -16 246 23 30 45 0 0 chr11 13472370 13472414 -135311058 + AT_rich Low_complexity Low_complexity 1 44 0 2443 71 7 3 chr11 13472497 13472805 -135310667 + AluSg SINE Alu 1 309 -1 579 254 0 16 chr11 13472813 13472935 -135310537 + MIR SINE MIR 30 149 -59 403 226 78 10 chr11 13473419 13473521 -135309951 - L1MC5 LINE L1 -97 7864 7756 266 283 123 38 chr11 13475359 13475465 -135308007 - MIR3 SINE MIR -6 202 88 2289 71 3 0 chr11 13476736 13477019 -135306453 - AluY SINE Alu -16 295 12 21 0 0 0 chr11 13477565 13477586 -135305886 + AT_rich Low_complexity Low_complexity 1 21 0 566 270 0 0 chr11 13478733 13478859 -135304613 - FLAM_A SINE Alu -16 126 1 2439 135 54 47 chr11 13478888 13479317 -135304155 - MSTB1 LTR MaLR 0 432 1 304 71 24 0 chr11 13479520 13479562 -135303910 - MER61C LTR ERV1 0 434 392 1011 223 57 32 chr11 13479822 13480143 -135303329 + MLT1G LTR MaLR 1 284 -306 590 233 0 16 chr11 13480184 13480313 -135303159 + MLT1G LTR MaLR 429 555 0 22 0 0 0 chr11 13480358 13480380 -135303092 + AT_rich Low_complexity Low_complexity 1 22 0 930 215 72 0 chr11 13480827 13481036 -135302436 + MER58A DNA MER1_type 1 224 0 1709 199 0 10 chr11 13481067 13481379 -135302093 - AluJb SINE Alu -3 309 1 2224 117 0 0 chr11 13481578 13481877 -135301595 + AluSx SINE Alu 1 299 -13 772 132 7 37 chr11 13482010 13482146 -135301326 - FLAM_C SINE Alu 0 133 2 282 284 68 80 chr11 13482924 13483086 -135300386 - MIR SINE MIR -75 187 28 290 254 0 0 chr11 13484389 13484452 -135299020 - MIR3 SINE MIR -8 200 138 663 135 39 0 chr11 13485021 13485125 -135298347 - HY1 scRNA scRNA -3 109 2 278 256 81 23 chr11 13485425 13485511 -135297961 - MIR SINE MIR -122 140 50 3095 19 11 0 chr11 13486211 13486576 -135296896 + L1PA4 LINE L1 5784 6152 -3 325 109 0 0 chr11 13487069 13487115 -135296357 + L2 LINE L2 3264 3309 -4 624 152 9 9 chr11 13487288 13487400 -135296072 - FLAM_A SINE Alu -4 138 27 496 204 124 26 chr11 13487495 13487608 -135295864 + MER94 DNA DNA 5 128 -6 2034 224 145 37 chr11 13487638 13488340 -135295132 - L1ME3A LINE L1 -9 6161 5536 2371 79 0 3 chr11 13488340 13488643 -135294829 - AluSx SINE Alu -10 302 1 2034 224 145 37 chr11 13488643 13489393 -135294079 - L1ME3A LINE L1 -634 5536 4431 232 81 27 0 chr11 13489435 13489472 -135294000 - L1MB5 LINE L1 -8 6166 6129 1187 180 41 132 chr11 13489474 13489868 -135293604 - MLT1A1 LTR MaLR -7 358 1 3099 184 42 17 chr11 13489868 13490290 -135293182 - L1MB5 LINE L1 -40 6134 5689 1212 160 48 35 chr11 13490290 13490354 -135293118 + MER46A DNA MER2_type 2 64 -2667 2020 125 10 0 chr11 13490354 13490643 -135292829 + AluSx SINE Alu 3 294 -18 1212 160 48 35 chr11 13490643 13490809 -135292663 + MER46A DNA MER2_type 64 235 -1 3099 184 42 17 chr11 13490809 13491029 -135292443 - L1MB5 LINE L1 -485 5689 5476 226 250 38 0 chr11 13491353 13491433 -135292039 - HAL1 LINE L1 -1600 907 825 1288 80 146 0 chr11 13491562 13491761 -135291711 + MER30 DNA MER1_type 3 230 0 293 212 129 24 chr11 13492912 13492997 -135290475 - MIR3 SINE MIR -26 182 89 216 265 59 73 chr11 13493729 13493865 -135289607 - MIR SINE MIR 0 262 129 25 31 0 0 chr11 13494377 13494409 -135289063 + AT_rich Low_complexity Low_complexity 1 32 0 892 186 149 0 chr11 13495374 13495562 -135287910 - MER20 DNA MER1_type 0 219 4 1954 139 3 7 chr11 13495634 13495936 -135287536 + AluSx SINE Alu 1 301 -11 361 330 31 21 chr11 13496451 13496642 -135286830 + L2 LINE L2 2177 2369 -945 292 252 96 52 chr11 13496685 13496800 -135286672 - L2 LINE L2 0 3313 3194 338 299 75 95 chr11 13496939 13497008 -135286464 + L2 LINE L2 2685 2754 -560 2363 65 3 3 chr11 13497008 13497302 -135286170 + AluY SINE Alu 3 296 -15 338 299 75 95 chr11 13497302 13497526 -135285946 + L2 LINE L2 2754 2972 -342 25 51 0 0 chr11 13497796 13497835 -135285637 + AT_rich Low_complexity Low_complexity 1 39 0 438 258 53 23 chr11 13498478 13498610 -135284862 + MIR SINE MIR 37 172 -90 26 0 0 0 chr11 13499433 13499459 -135284013 + AT_rich Low_complexity Low_complexity 1 26 0 942 165 18 0 chr11 13499716 13499880 -135283592 + L1MA5A LINE L1 6128 6294 -3 358 123 192 27 chr11 13499917 13499990 -135283482 + AluJb SINE Alu 43 127 -175 26 30 0 0 chr11 13499990 13500023 -135283449 + AT_rich Low_complexity Low_complexity 1 33 0 389 343 21 14 chr11 13500305 13500448 -135283024 + MIR SINE MIR 8 151 -111 21 0 0 0 chr11 13500830 13500851 -135282621 + AT_rich Low_complexity Low_complexity 1 21 0 1294 151 0 9 chr11 13501629 13501841 -135281631 - AluJb SINE Alu -3 309 100 2155 122 0 0 chr11 13502219 13502522 -135280950 + AluSq SINE Alu 1 303 -10 278 340 36 62 chr11 13502888 13503082 -135280390 - MER5A DNA MER1_type 0 189 1 208 200 0 83 chr11 13503085 13503145 -135280327 - MER5A DNA MER1_type -26 163 109 324 349 66 20 chr11 13503270 13503422 -135280050 - MER5A DNA MER1_type -22 167 9 234 210 16 16 chr11 13504651 13504713 -135278759 - L1MC/D LINE L1 -516 5817 5756 975 133 99 5 chr11 13504959 13505170 -135278302 - L1MA8 LINE L1 -3 6288 6058 503 250 125 45 chr11 13505237 13505461 -135278011 - MIR SINE MIR -5 257 16 342 269 65 43 chr11 13505540 13505726 -135277746 - L1MC/D LINE L1 -1993 5815 5626 23 54 0 0 chr11 13506104 13506141 -135277331 + AT_rich Low_complexity Low_complexity 1 37 0 1689 112 27 12 chr11 13506581 13506840 -135276632 + AluSg SINE Alu 43 305 -5 285 29 0 0 chr11 13506902 13506936 -135276536 + (CA)n Simple_repeat Simple_repeat 1 34 0 205 286 39 26 chr11 13508358 13508435 -135275037 - MIR3 SINE MIR -14 194 117 777 248 142 23 chr11 13508677 13508979 -135274493 - MER46C DNA MER2_type 0 338 1 687 290 82 48 chr11 13514771 13515205 -135268267 - MLT1G LTR MaLR -13 542 82 1442 63 0 5 chr11 13515261 13515452 -135268020 - L1PA5 LINE L1 -16 6138 5949 266 229 0 0 chr11 13515475 13515523 -135267949 - MLT1G LTR MaLR -547 48 1 1107 230 4 13 chr11 13516096 13516322 -135267150 - MER58A DNA MER1_type 0 224 1 786 226 133 99 chr11 13517095 13517646 -135265826 - MLT1G LTR MaLR -10 580 7 836 229 51 0 chr11 13518125 13518300 -135265172 + MER20 DNA MER1_type 36 219 0 2363 91 3 10 chr11 13520920 13521229 -135262243 - AluSx SINE Alu -4 308 2 236 77 26 0 chr11 13521312 13521351 -135262121 + (TA)n Simple_repeat Simple_repeat 1 40 0 698 286 152 21 chr11 13521448 13521539 -135261933 - L1MEd LINE L1 -4711 1599 1521 1624 173 16 19 chr11 13521539 13521851 -135261621 + AluJo SINE Alu 2 312 0 698 286 152 21 chr11 13521851 13522616 -135260856 - L1MEd LINE L1 -4789 1521 592 1951 128 7 13 chr11 13522720 13523024 -135260448 + AluJb SINE Alu 1 302 -10 733 200 35 25 chr11 13523111 13523311 -135260161 - MER33 DNA MER1_type -97 227 26 654 126 0 10 chr11 13523323 13523426 -135260046 + MSTA LTR MaLR 327 428 0 1270 206 60 31 chr11 13523427 13523868 -135259604 - L1ME3A LINE L1 -164 6006 5415 555 313 83 19 chr11 13523866 13524131 -135259341 + L1ME4a LINE L1 5262 5543 -2265 * 436 243 51 86 chr11 13524133 13524517 -135258955 - L1MEc LINE L1 -3845 2581 2234 265 56 0 0 chr11 13524583 13524619 -135258853 + MADE1 DNA Mariner 1 36 -44 541 326 38 23 chr11 13524702 13525049 -135258423 - L1MEc LINE L1 -4584 2023 1672 339 306 45 57 chr11 13525107 13525264 -135258208 - L1MEc LINE L1 -5058 1368 1214 344 305 76 0 chr11 13526374 13526492 -135256980 - MIR3 SINE MIR -67 141 15 25 51 0 0 chr11 13528835 13528874 -135254598 + AT_rich Low_complexity Low_complexity 1 39 0 24 67 0 0 chr11 13530578 13530623 -135252849 + AT_rich Low_complexity Low_complexity 1 45 0 316 176 162 0 chr11 13531247 13531315 -135252157 + MER116 DNA Mariner 1 79 -1 244 200 67 17 chr11 13531342 13531402 -135252070 + MARNA DNA Mariner 44 106 -480 618 269 211 0 chr11 13531571 13531779 -135251693 - MIR SINE MIR -10 252 1 266 140 80 0 chr11 13531872 13531922 -135251550 - L2 LINE L2 0 3272 3219 4052 93 37 2 chr11 13532399 13532934 -135250538 - MER41A LTR ERV1 0 554 1 1135 151 32 32 chr11 13533109 13533295 -135250177 + MER5A DNA MER1_type 4 189 0 2242 113 3 0 chr11 13533401 13533703 -135249769 + AluSg SINE Alu 2 304 -6 233 225 38 38 chr11 13533703 13533783 -135249689 + L1ME4a LINE L1 5953 6032 -89 199 200 0 0 chr11 13534549 13534584 -135248888 + L2 LINE L2 3264 3298 -15 28 29 0 0 chr11 13536010 13536045 -135247427 + AT_rich Low_complexity Low_complexity 1 35 0 1965 154 10 0 chr11 13536432 13536782 -135246690 - AluSx SINE Alu 0 353 1 191 236 181 42 chr11 13536784 13536856 -135246616 - MER5A DNA MER1_type -72 117 36 31 0 0 0 chr11 13537270 13537301 -135246171 + AT_rich Low_complexity Low_complexity 1 31 0 874 167 83 44 chr11 13537301 13537505 -135245967 + AluJo SINE Alu 84 295 -17 604 217 183 6 chr11 13537560 13537740 -135245732 + MIR SINE MIR 36 247 -15 2175 108 3 7 chr11 13538705 13539000 -135244472 - AluSq SINE Alu -18 295 2 1020 240 78 6 chr11 13539307 13539732 -135243740 + LTR33 LTR ERVL 19 505 -16 2323 82 10 0 chr11 13540138 13540430 -135243042 - AluSx SINE Alu -17 295 1 362 358 98 12 chr11 13540431 13540677 -135242795 + L2 LINE L2 2454 2720 -594 25 75 0 0 chr11 13541019 13541072 -135242400 + AT_rich Low_complexity Low_complexity 1 53 0 362 299 57 67 chr11 13541153 13541347 -135242125 + MER117 DNA MER1_type 1 192 -5 326 315 63 0 chr11 13541448 13541591 -135241881 - L1MEc LINE L1 -2254 3961 3810 * 1552 253 83 98 chr11 13541587 13542714 -135240758 - L1MEc LINE L1 -4355 2041 934 1518 190 48 24 chr11 13542714 13543003 -135240469 + AluJo SINE Alu 1 296 -16 1552 253 83 98 chr11 13543003 13543147 -135240325 - L1MEc LINE L1 -5462 934 789 273 136 0 0 chr11 13543149 13543193 -135240279 - AluJ/FLAM SINE Alu -218 84 41 347 333 31 16 chr11 13543398 13543590 -135239882 - L1MEc LINE L1 -5951 445 251 647 317 117 27 chr11 13544253 13544663 -135238809 - LTR16A LTR ERVL -3 447 1 631 326 164 20 chr11 13545800 13547140 -135236332 + L2 LINE L2 1521 3056 -216 776 263 9 9 chr11 13547680 13547893 -135235579 + L1PB1 LINE L1 4 216 -6647 * 15631 179 19 21 chr11 13547870 13548796 -135234676 + L1PB1 LINE L1 1392 2319 -4548 2221 115 30 0 chr11 13548796 13549092 -135234380 - AluSg SINE Alu -5 305 1 15631 179 19 21 chr11 13549092 13550435 -135233037 + L1PB1 LINE L1 2319 3664 -3203 2144 108 0 19 chr11 13550435 13550742 -135232730 + AluY SINE Alu 1 301 -10 15631 179 19 21 chr11 13550742 13553897 -135229575 + L1PB1 LINE L1 3664 6866 -1 543 78 0 0 chr11 13554129 13554206 -135229266 + (TGGA)n Simple_repeat Simple_repeat 1 77 0 2093 136 0 22 chr11 13554750 13555067 -135228405 + AluSg SINE Alu 1 310 0 1601 149 156 53 chr11 13556989 13557439 -135226033 - LTR54B LTR ERV1 -2 496 1 194 224 0 103 chr11 13557824 13557882 -135225590 - MIR SINE MIR -88 174 123 185 280 0 0 chr11 13557980 13558030 -135225442 - MIR SINE MIR -17 245 196 1276 184 56 23 chr11 13558096 13558401 -135225071 - MER33 DNA MER1_type -9 315 1 492 336 24 64 chr11 13559486 13559781 -135223691 - MLT1K LTR MaLR -3 585 303 24 32 0 0 chr11 13560099 13560130 -135223342 + AT_rich Low_complexity Low_complexity 1 31 0 233 329 0 0 chr11 13560213 13560295 -135223177 - L3 LINE CR1 -1071 506 425 702 195 39 95 chr11 13560325 13560556 -135222916 + LTR33 LTR ERVL 4 221 -300 558 254 34 23 chr11 13560614 13560791 -135222681 + LTR33 LTR ERVL 334 512 -9 416 330 91 17 chr11 13560796 13561026 -135222446 - L3 LINE CR1 -1188 389 143 665 301 23 30 chr11 13561076 13561338 -135222134 - MLT1I LTR MaLR -4 405 146 281 140 120 0 chr11 13561810 13561860 -135221612 + L2 LINE L2 3258 3313 0 262 266 55 55 chr11 13562911 13563020 -135220452 - MIR SINE MIR -104 158 50 582 333 72 7 chr11 13563141 13563432 -135220040 + L2 LINE L2 2366 2675 -639 328 333 78 0 chr11 13564042 13564171 -135219301 + L2 LINE L2 3134 3272 0 191 272 12 0 chr11 13564176 13564257 -135219215 + (TA)n Simple_repeat Simple_repeat 2 83 0 2956 103 67 30 chr11 13564303 13564769 -135218703 - MER31A LTR ERV1 -2 483 1 1998 162 0 0 chr11 13565057 13565354 -135218118 + AluSx SINE Alu 1 297 -15 1774 130 6 101 chr11 13565484 13565822 -135217650 - AluJb SINE Alu -6 306 1 3220 158 112 37 chr11 13566555 13567231 -135216241 - LTR8A LTR ERV1 0 727 1 674 221 79 83 chr11 13567431 13567685 -135215787 + MLT1K LTR MaLR 334 586 -2 464 222 140 97 chr11 13568252 13568531 -135214941 - MER102a DNA MER1_type -4 326 36 767 258 74 68 chr11 13568823 13569296 -135214176 + MLT1K LTR MaLR 1 476 0 2245 103 17 0 chr11 13569929 13570229 -135213243 - AluSx SINE Alu -7 305 1 719 312 36 8 chr11 13571664 13571917 -135211555 - MIR SINE MIR 0 262 3 244 193 0 0 chr11 13572135 13572192 -135211280 - Charlie7 DNA MER1_type -2447 165 109 218 31 0 31 chr11 13572192 13572224 -135211248 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 5769 146 48 6 chr11 13572377 13572959 -135210513 + L1PA16 LINE L1 4675 5231 -935 236 53 26 0 chr11 13572959 13572997 -135210475 + (CAA)n Simple_repeat Simple_repeat 1 39 0 5769 146 48 6 chr11 13572997 13573846 -135209626 + L1PA16 LINE L1 5231 6163 -3 2451 136 62 14 chr11 13574072 13574507 -135208965 - MLT1C LTR MaLR 0 467 12 1180 203 5 5 chr11 13574597 13574814 -135208658 - MER20 DNA MER1_type 0 219 3 2198 179 126 49 chr11 13575205 13575795 -135207677 - L1MA10 LINE L1 -1 6333 5553 2336 75 3 28 chr11 13575795 13576141 -135207331 + LTR7 LTR ERV1 90 410 -40 184 0 0 88 chr11 13576146 13576180 -135207292 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 1496 158 28 47 chr11 13576182 13576630 -135206842 - L1M4 LINE L1 -634 5550 5100 742 229 126 22 chr11 13576805 13577036 -135206436 + MIR SINE MIR 4 258 -4 186 245 0 0 chr11 13577051 13577100 -135206372 + L2 LINE L2 3222 3270 -2 2267 105 3 0 chr11 13577697 13577993 -135205479 - AluSp SINE Alu -14 299 3 1645 164 3 11 chr11 13578583 13578791 -135204681 + L1MB3 LINE L1 5579 5786 -397 1970 176 46 0 chr11 13578791 13579120 -135204352 + MER2 DNA MER2_type 1 344 0 1645 164 3 11 chr11 13579120 13579198 -135204274 + L1MB3 LINE L1 5786 5863 -320 787 165 86 13 chr11 13579895 13580102 -135203370 + MER106B DNA MER1_type 1 1058 -1 27 49 0 0 chr11 13580496 13580537 -135202935 + AT_rich Low_complexity Low_complexity 1 41 0 452 240 82 53 chr11 13580626 13580759 -135202713 - MIR SINE MIR -67 195 54 1336 189 120 63 chr11 13580759 13581125 -135202347 - MLT1B LTR MaLR -2 388 2 452 240 82 53 chr11 13581125 13581162 -135202310 - MIR SINE MIR -208 54 20 502 339 32 29 chr11 13581350 13581774 -135201698 + L2 LINE L2 2560 3059 -213 1616 164 22 50 chr11 13581848 13582008 -135201464 - MLT1A1 LTR MaLR -49 316 168 1993 122 3 10 chr11 13582008 13582304 -135201168 - AluSx SINE Alu -18 294 1 1616 164 22 50 chr11 13582304 13582461 -135201011 - MLT1A1 LTR MaLR -197 168 8 315 326 22 14 chr11 13583693 13583831 -135199641 - L1ME LINE L1 -391 5730 5592 1801 158 11 3 chr11 13583954 13584239 -135199233 + AluJo SINE Alu 1 287 -25 542 232 7 21 chr11 13584613 13584755 -135198717 - MARNA DNA Mariner -124 462 323 1354 244 176 19 chr11 13584844 13585429 -135198043 - LTR50 LTR ERVL -116 679 3 310 303 101 0 chr11 13585433 13585552 -135197920 - MIR SINE MIR -28 234 104 2288 138 24 27 chr11 13585694 13586070 -135197402 + THE1C LTR MaLR 1 375 0 418 315 36 0 chr11 13586386 13586497 -135196975 - MIR SINE MIR -112 150 36 361 283 173 16 chr11 13586562 13586751 -135196721 - MIR SINE MIR -27 235 17 406 195 195 6 chr11 13586751 13586904 -135196568 - MER5A DNA MER1_type 0 189 4 547 199 42 2 chr11 13588117 13588252 -135195220 - L1ME2 LINE L1 -308 5856 5730 628 269 16 33 chr11 13588253 13588435 -135195037 + MLT1H LTR MaLR 134 312 -237 465 212 26 35 chr11 13588425 13588538 -135194934 + MLT1H LTR MaLR 438 549 0 * 192 40 0 0 chr11 13589200 13589225 -135194247 + (TG)n Simple_repeat Simple_repeat 2 26 0 259 178 14 14 chr11 13589329 13589402 -135194070 + (TA)n Simple_repeat Simple_repeat 1 73 0 1338 243 11 0 chr11 13589480 13589747 -135193725 - MER115 DNA AcHobo -6 687 418 1621 198 14 3 chr11 13589788 13590071 -135193401 + MLT1A1 LTR MaLR 80 365 0 828 321 31 42 chr11 13590103 13590390 -135193082 - MER115 DNA AcHobo -338 355 72 336 275 160 42 chr11 13590438 13591158 -135192314 - L1M4 LINE L1 -2334 3812 3008 495 186 58 0 chr11 13591636 13591722 -135191750 - LTR50 LTR ERVL -696 99 9 306 295 116 50 chr11 13591901 13592142 -135191330 + L1ME3A LINE L1 680 936 -5269 205 26 26 51 chr11 13592182 13592221 -135191251 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 38127 36 26 3 chr11 13592221 13597656 -135185816 - L1PA3 LINE L1 -13 6142 578 718 76 0 0 chr11 13597623 13597715 -135185757 - L1PA3 LINE L1 -6048 98 7 * 225 216 189 0 chr11 13597762 13597836 -135185636 + L1ME3A LINE L1 1027 1114 -5091 2352 141 141 65 chr11 13597951 13598300 -135185172 - MLT2B1 LTR ERVL -10 510 114 6810 45 5 22 chr11 13598300 13599105 -135184367 + L1PA5 LINE L1 5361 6151 -3 2352 141 141 65 chr11 13599105 13599229 -135184243 - MLT2B1 LTR ERVL -406 114 1 779 275 112 30 chr11 13599243 13599574 -135183898 + L1ME3A LINE L1 1261 1648 -4748 2273 159 34 0 chr11 13599574 13599926 -135183546 - THE1B LTR MaLR 0 364 1 779 275 112 30 chr11 13599926 13600096 -135183376 + L1ME3A LINE L1 1648 1803 -4593 23 0 0 0 chr11 13600115 13600138 -135183334 + AT_rich Low_complexity Low_complexity 1 23 0 475 290 201 10 chr11 13600340 13600654 -135182818 + L1ME3A LINE L1 2150 2523 -3873 3914 245 98 53 chr11 13600688 13600822 -135182650 + L1ME3A LINE L1 3062 3189 -3042 1862 131 16 32 chr11 13600822 13601135 -135182337 + AluJb SINE Alu 5 312 0 3914 245 98 53 chr11 13601135 13601829 -135181643 + L1ME3A LINE L1 3189 3850 -2381 2226 170 11 22 chr11 13601829 13602194 -135181278 + MLT1A1 LTR MaLR 4 364 -1 3914 245 98 53 chr11 13602194 13602949 -135180523 + L1ME3A LINE L1 3850 4570 -1661 585 112 22 0 chr11 13602949 13603038 -135180434 - L1PA15 LINE L1 -7 6158 6068 3914 245 98 53 chr11 13603038 13603632 -135179840 + L1ME3A LINE L1 4570 5355 -876 330 26 0 0 chr11 13603632 13603671 -135179801 + (TG)n Simple_repeat Simple_repeat 2 40 0 3914 245 98 53 chr11 13603671 13603782 -135179690 + L1ME3A LINE L1 5355 5460 -771 1007 110 41 0 chr11 13603782 13603927 -135179545 + LTR29 LTR ERV1 395 545 -77 422 172 0 0 chr11 13604029 13604093 -135179379 - FLAM SINE Alu -27 116 53 4791 148 42 54 chr11 13604222 13605071 -135178401 + L1MB2 LINE L1 5006 5822 -349 1467 179 13 60 chr11 13605071 13605372 -135178100 + AluJo SINE Alu 11 297 -15 4791 148 42 54 chr11 13605372 13605718 -135177754 + L1MB2 LINE L1 5822 6171 0 1563 247 76 39 chr11 13605737 13606001 -135177471 + L1ME3A LINE L1 5447 5700 -539 1640 217 133 7 chr11 13606001 13606416 -135177056 - MLT1C LTR MaLR 0 467 1 1563 247 76 39 chr11 13606416 13606690 -135176782 + L1ME3A LINE L1 5700 6005 -234 440 303 32 32 chr11 13606769 13606957 -135176515 + L1ME3A LINE L1 6031 6218 -21 242 364 21 50 chr11 13607923 13608063 -135175409 + L2 LINE L2 3137 3272 0 695 266 142 20 chr11 13608228 13608653 -135174819 - L2 LINE L2 -172 3141 2667 849 230 6 0 chr11 13608666 13608844 -135174628 + MER69 DNA AcHobo 525 703 -1823 3687 196 94 26 chr11 13608870 13609714 -135173758 + MER69 DNA AcHobo 1456 2380 -146 1727 166 10 36 chr11 13609714 13610022 -135173450 - AluJo SINE Alu -12 300 1 3687 196 94 26 chr11 13610022 13610175 -135173297 + MER69 DNA AcHobo 2380 2521 -5 374 185 7 141 chr11 13610204 13610258 -135173214 - L2 LINE L2 -1004 2310 2250 2808 91 14 0 chr11 13610258 13610608 -135172864 - THE1A LTR MaLR 0 355 1 12329 97 8 1 chr11 13610608 13612174 -135171298 - THE1A-int LTR MaLR 0 1580 3 2848 75 11 0 chr11 13612178 13612527 -135170945 - THE1A LTR MaLR -2 353 1 374 185 7 141 chr11 13612527 13612601 -135170871 - L2 LINE L2 -1066 2248 2194 445 162 0 14 chr11 13612601 13612675 -135170797 + ORSL DNA AcHobo 1 73 -202 1138 216 52 22 chr11 13612677 13612908 -135170564 + Tigger5 DNA MER2_type 1 238 -2085 * 1219 111 0 0 chr11 13612898 13613069 -135170403 + Tigger5 DNA MER2_type 2085 2255 -68 407 275 50 25 chr11 13613074 13613194 -135170278 - L2 LINE L2 0 3313 3191 228 171 24 0 chr11 13613221 13613262 -135170210 + Tigger5 DNA MER2_type 14 55 -2268 440 141 115 0 chr11 13613272 13613350 -135170122 + Tigger5 DNA MER2_type 2237 2323 0 255 61 0 0 chr11 13613351 13613384 -135170088 + (CA)n Simple_repeat Simple_repeat 2 34 0 679 173 0 0 chr11 13613444 13613548 -135169924 + ORSL DNA AcHobo 169 272 -3 479 274 28 0 chr11 13613548 13613654 -135169818 - L2 LINE L2 -1113 2201 2093 1373 223 177 157 chr11 13613940 13614636 -135168836 - L2 LINE L2 -1223 2091 1173 402 215 48 108 chr11 13614636 13614823 -135168649 + MER69A DNA AcHobo 1 177 0 1373 223 177 157 chr11 13614823 13615242 -135168230 - L2 LINE L2 -2141 1173 764 1321 172 40 73 chr11 13615243 13615485 -135167987 + MER89 LTR ERV1 1 249 -310 2315 111 0 0 chr11 13615485 13615791 -135167681 + AluSg SINE Alu 1 306 -4 1321 172 40 73 chr11 13615791 13615971 -135167501 + MER89 LTR ERV1 249 506 -53 1982 289 34 40 chr11 13615986 13616717 -135166755 - L2 LINE L2 -2548 766 40 225 250 107 0 chr11 13616952 13617008 -135166464 + L2 LINE L2 3207 3268 -4 810 214 26 34 chr11 13617428 13617662 -135165810 - MER93b LTR ERV1 -2 371 140 324 275 198 18 chr11 13617910 13618077 -135165395 - L3 LINE CR1 -27 1550 1354 33132 37 1 0 chr11 13618393 13623148 -135160324 - L1PA4 LINE L1 -3 6152 1393 247 326 155 2 chr11 13623852 13624008 -135159464 + MIR SINE MIR 6 186 -76 566 248 50 134 chr11 13624025 13624384 -135159088 - L2 LINE L2 -2 3311 2983 632 229 392 10 chr11 13624498 13624804 -135158668 - L2 LINE L2 -668 2646 2224 1752 230 100 26 chr11 13625336 13625828 -135157644 - MLT1F1 LTR MaLR -2 565 38 24 0 0 0 chr11 13625914 13625938 -135157534 + AT_rich Low_complexity Low_complexity 1 24 0 219 36 0 0 chr11 13625943 13625971 -135157501 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2392 15 0 0 chr11 13625974 13626243 -135157229 - L1HS LINE L1 -2 6153 5885 * 3663 10 0 0 chr11 13626239 13626638 -135156834 + L1HS LINE L1 5495 5893 -262 890 222 6 0 chr11 13626901 13627072 -135156400 + MER74A LTR ERVL 1 172 -386 1796 184 35 27 chr11 13627284 13627659 -135155813 + MER74A LTR ERVL 177 554 -4 9158 64 3 2 chr11 13628334 13629404 -135154068 - MER11C LTR ERVK 0 1071 1 794 254 113 71 chr11 13630025 13630539 -135152933 - MLT1H LTR MaLR -4 545 12 1453 211 68 9 chr11 13630629 13630965 -135152507 + MLT1A1 LTR MaLR 10 365 0 3262 112 0 23 chr11 13631732 13632206 -135151266 - L1PA13 LINE L1 -5 6158 5696 213 269 135 31 chr11 13632211 13632370 -135151102 - MIR SINE MIR -82 180 1 413 89 0 0 chr11 13634619 13634675 -135148797 + MLT2D LTR ERVL 1 56 -358 313 218 81 0 chr11 13634674 13634761 -135148711 + MLT2D LTR ERVL 317 410 -4 * 400 243 69 28 chr11 13635324 13635468 -135148004 + MIR SINE MIR 77 226 -36 359 314 57 28 chr11 13635565 13635766 -135147706 + MIR SINE MIR 36 240 -22 203 305 0 17 chr11 13636060 13636119 -135147353 + GA-rich Low_complexity Low_complexity 2 59 0 1829 200 108 36 chr11 13637115 13637586 -135145886 - MLT1D LTR MaLR 0 505 1 2099 128 0 7 chr11 13637661 13637959 -135145513 + AluSx SINE Alu 1 296 -16 309 294 116 0 chr11 13639398 13639544 -135143928 + MIR SINE MIR 93 255 -7 241 318 0 0 chr11 13641280 13641343 -135142129 + MLT1J1 LTR MaLR 331 393 -53 370 256 168 48 chr11 13642919 13643191 -135140281 - L1MC4a LINE L1 -188 5933 5620 1413 229 35 50 chr11 13643528 13643926 -135139546 + MLT1I LTR MaLR 18 409 0 2724 23 3 0 chr11 13644667 13644969 -135138503 + AluY SINE Alu 1 303 -8 291 296 102 23 chr11 13645212 13645350 -135138122 - MER112 DNA MER1_type -4 256 130 1595 169 0 25 chr11 13645350 13645634 -135137838 - AluJb SINE Alu 0 312 36 291 296 102 23 chr11 13645634 13645668 -135137804 - MER112 DNA MER1_type -130 130 100 243 0 0 0 chr11 13645668 13645695 -135137777 + (TG)n Simple_repeat Simple_repeat 2 28 0 291 296 102 23 chr11 13645695 13645737 -135137735 - MER112 DNA MER1_type -160 100 24 275 131 16 33 chr11 13647112 13647173 -135136299 - L1MC1 LINE L1 0 6333 6274 1305 114 0 0 chr11 13647264 13647439 -135136033 - AluSg/x SINE Alu 0 310 136 180 0 0 0 chr11 13648498 13648518 -135134954 + (TTA)n Simple_repeat Simple_repeat 2 21 0 211 292 42 10 chr11 13648532 13648628 -135134844 - MIR SINE MIR -132 130 32 188 284 59 49 chr11 13649595 13649697 -135133775 + L2 LINE L2 1164 1266 -2048 340 246 32 32 chr11 13650005 13650131 -135133341 - MIR SINE MIR -12 250 125 554 278 68 45 chr11 13650382 13650648 -135132824 - MLT1K LTR MaLR 0 588 317 711 203 0 7 chr11 13650984 13651127 -135132345 + L1MB7 LINE L1 5981 6122 -62 971 203 0 11 chr11 13651661 13651848 -135131624 + L1MB8 LINE L1 5983 6167 -11 723 208 0 0 chr11 13652029 13652159 -135131313 + FLAM_C SINE Alu 3 132 -11 1481 184 31 27 chr11 13652177 13652471 -135131001 + AluJo SINE Alu 6 300 -12 259 254 17 0 chr11 13652488 13652547 -135130925 + L2 LINE L2 3223 3282 -31 1014 224 72 99 chr11 13652547 13653069 -135130403 + MLT1H LTR MaLR 1 549 0 1999 190 3 6 chr11 13653753 13654101 -135129371 + MLT1A1 LTR MaLR 19 365 0 472 184 122 10 chr11 13654688 13654786 -135128686 - MER81 DNA DNA -1 113 5 303 235 24 12 chr11 13654879 13654964 -135128508 + MIR SINE MIR 128 213 -49 238 348 0 11 chr11 13655505 13655597 -135127875 + MER5A DNA MER1_type 95 185 -4 191 345 53 18 chr11 13655595 13655708 -135127764 + L2 LINE L2 3144 3260 -12 * 257 295 152 9 chr11 13656966 13657071 -135126401 + L2 LINE L2 3151 3270 -2 280 232 49 49 chr11 13657094 13657176 -135126296 - MIR SINE MIR -118 144 63 2469 119 86 0 chr11 13657833 13658227 -135125245 - MSTA LTR MaLR 0 428 1 547 224 22 30 chr11 13658283 13658417 -135125055 - MER117 DNA MER1_type -61 136 4 2243 12 0 0 chr11 13660926 13661178 -135122294 - L1P1 LINE L1 -594 5561 5310 1365 53 29 0 chr11 13661178 13661344 -135122128 + L1PA3 LINE L1 5980 6155 0 603 247 28 22 chr11 13661355 13661533 -135121939 - Charlie8 DNA MER1_type -2141 276 98 2039 137 7 13 chr11 13661728 13662035 -135121437 - AluJo SINE Alu -7 305 1 431 242 85 20 chr11 13662476 13662629 -135120843 - HsTC2 DNA Tc2 -1009 889 727 24 32 0 0 chr11 13662728 13662759 -135120713 + AT_rich Low_complexity Low_complexity 1 31 0 239 316 84 0 chr11 13663178 13663273 -135120199 - MIR SINE MIR -79 183 81 864 194 10 36 chr11 13663506 13663702 -135119770 - L1PB4 LINE L1 -1 6155 5965 2061 155 3 18 chr11 13663754 13664096 -135119376 + MER1B DNA MER1_type 1 337 0 566 256 109 14 chr11 13664546 13664757 -135118715 - L1M4 LINE L1 -2448 3698 3468 21 26 0 26 chr11 13664757 13664776 -135118696 + AT_rich Low_complexity Low_complexity 1 19 -19 12525 27 0 0 chr11 13664776 13666989 -135116483 - L1PA3 LINE L1 0 6155 3943 21 26 0 26 chr11 13666989 13667008 -135116464 + AT_rich Low_complexity Low_complexity 19 38 0 1211 253 35 59 chr11 13667012 13667503 -135115969 + L1M4 LINE L1 3689 4167 -1979 1111 234 31 0 chr11 13667505 13667795 -135115677 + L1MC3 LINE L1 7324 7622 -163 953 169 0 0 chr11 13667924 13668105 -135115367 - FRAM SINE Alu 0 185 5 253 210 16 16 chr11 13668576 13668638 -135114834 - MER103 DNA DNA -92 74 13 22 0 0 0 chr11 13669083 13669105 -135114367 + AT_rich Low_complexity Low_complexity 1 22 0 2530 127 6 3 chr11 13669294 13669657 -135113815 - THE1B LTR MaLR 0 364 1 858 302 109 9 chr11 13669720 13670271 -135113201 - L2 LINE L2 -2 3311 2707 395 350 14 32 chr11 13670743 13670963 -135112509 + L2 LINE L2 2065 2280 -1034 1785 174 3 7 chr11 13670963 13671262 -135112210 - AluSx SINE Alu -10 302 5 190 266 62 62 chr11 13671298 13671411 -135112061 + L2 LINE L2 3200 3312 -1 684 275 153 14 chr11 13671418 13671862 -135111610 + L2 LINE L2 553 1058 -2256 195 284 53 32 chr11 13671876 13671971 -135111501 - L2 LINE L2 -42 3230 3134 261 83 0 0 chr11 13673148 13673184 -135110288 + (TG)n Simple_repeat Simple_repeat 1 36 0 * 360 0 0 0 chr11 13673183 13673223 -135110249 + (GA)n Simple_repeat Simple_repeat 1 40 0 1615 178 16 33 chr11 13673461 13673827 -135109645 - L1MA4 LINE L1 -5 6295 5936 638 170 9 0 chr11 13673841 13673953 -135109519 - FLAM_A SINE Alu -11 131 19 413 317 6 49 chr11 13674349 13674513 -135108959 - MER117 DNA MER1_type 0 197 41 544 293 19 56 chr11 13676085 13676300 -135107172 + MIR SINE MIR 56 262 0 219 293 13 13 chr11 13676397 13676472 -135107000 + CT-rich Low_complexity Low_complexity 4 78 0 1891 102 55 0 chr11 13676686 13676975 -135106497 + AluSg SINE Alu 15 317 0 475 268 118 18 chr11 13677189 13677409 -135106063 - MIR SINE MIR 0 262 21 282 291 34 8 chr11 13677889 13678006 -135105466 + MIR SINE MIR 134 253 -9 200 143 24 24 chr11 13678023 13678065 -135105407 + GA-rich Low_complexity Low_complexity 2 43 0 187 306 139 29 chr11 13680274 13680447 -135103025 - L2 LINE L2 -863 2451 2260 694 289 43 30 chr11 13681109 13681344 -135102128 + MIR SINE MIR 18 255 -7 231 175 12 125 chr11 13682909 13682989 -135100483 + MIR SINE MIR 69 139 -69 394 264 9 0 chr11 13683102 13683208 -135100264 + MER94 DNA DNA 4 110 -24 341 189 54 0 chr11 13683407 13683481 -135099991 - MER53 DNA DNA -2 187 110 266 115 77 39 chr11 13683696 13683748 -135099724 - L1MB7 LINE L1 0 6184 6131 227 394 37 11 chr11 13683975 13684163 -135099309 - L2 LINE L2 -236 3036 2844 201 333 40 30 chr11 13684181 13684280 -135099192 - L2 LINE L2 -855 2459 2360 347 276 10 0 chr11 13684811 13684909 -135098563 - L1ME4a LINE L1 -66 6055 5957 1129 207 5 0 chr11 13685066 13685274 -135098198 - MER3 DNA MER1_type 0 209 1 1325 254 112 74 chr11 13685379 13685991 -135097481 - L1ME3A LINE L1 -13 6157 5569 1956 133 177 11 chr11 13685991 13686173 -135097299 + MSTA LTR MaLR 1 151 -277 189 0 0 0 chr11 13686173 13686194 -135097278 + (TC)n Simple_repeat Simple_repeat 1 21 0 1956 133 177 11 chr11 13686194 13686378 -135097094 + MSTA LTR MaLR 151 428 0 1325 254 112 74 chr11 13686378 13687055 -135096417 - L1ME3A LINE L1 -601 5569 4805 983 207 103 0 chr11 13687055 13687258 -135096214 + MER58A DNA MER1_type 1 224 0 1325 254 112 74 chr11 13687258 13687428 -135096044 - L1ME3A LINE L1 -1365 4805 4643 22 35 0 0 chr11 13687433 13687462 -135096010 + AT_rich Low_complexity Low_complexity 1 29 0 411 255 21 28 chr11 13687468 13687609 -135095863 - L1ME4a LINE L1 -218 5903 5764 347 301 45 0 chr11 13687670 13687803 -135095669 + L1ME LINE L1 5598 5736 -385 240 125 0 25 chr11 13687935 13687975 -135095497 - tRNA-Gly-GGA tRNA tRNA -36 39 1 392 292 10 0 chr11 13688997 13689093 -135094379 + MER5B DNA MER1_type 50 146 -32 550 316 71 15 chr11 13689403 13689599 -135093873 - MIR SINE MIR -30 232 26 280 270 0 0 chr11 13689648 13689711 -135093761 + MIR SINE MIR 197 259 -3 1518 181 26 0 chr11 13691721 13691991 -135091481 - L1MD3 LINE L1 0 7995 7719 854 136 0 0 chr11 13692010 13692128 -135091344 + FLAM_C SINE Alu 1 118 -15 12266 42 2 9 chr11 13692156 13694355 -135089117 - L1PA5 LINE L1 -5 6149 3960 384 181 0 0 chr11 13695515 13695598 -135087874 + (TG)n Simple_repeat Simple_repeat 2 84 0 498 323 20 92 chr11 13695704 13696007 -135087465 - L2 LINE L2 -27 3245 2965 323 233 108 34 chr11 13696015 13696191 -135087281 + LTR33 LTR ERVL 27 215 -306 1081 300 44 50 chr11 13696293 13696857 -135086615 + MER115 DNA AcHobo 133 693 0 314 194 58 48 chr11 13696926 13697029 -135086443 + LTR33 LTR ERVL 415 518 -3 209 69 0 0 chr11 13697035 13697064 -135086408 - L2 LINE L2 -305 2967 2939 261 57 0 0 chr11 13698905 13698940 -135084532 + (GA)n Simple_repeat Simple_repeat 1 35 0 264 271 56 56 chr11 13699237 13699381 -135084091 + HAL1 LINE L1 1464 1607 -900 972 270 124 45 chr11 13699521 13700266 -135083206 - L2 LINE L2 -2 3311 2517 251 307 64 14 chr11 13700278 13700418 -135083054 + HAL1b LINE L1 1187 1333 -15 798 300 108 13 chr11 13700684 13701072 -135082400 - LTR16A LTR ERVL 0 450 1 608 284 130 5 chr11 13701109 13701317 -135082155 + MIR SINE MIR 27 260 -2 2078 129 14 0 chr11 13701373 13701660 -135081812 - AluJo SINE Alu -21 291 1 2732 121 25 39 chr11 13705263 13705701 -135077771 - MSTB1 LTR MaLR 0 432 1 1112 193 10 5 chr11 13705702 13705909 -135077563 - MIR SINE MIR -5 257 50 476 294 69 36 chr11 13706234 13706652 -135076820 + L1ME4a LINE L1 2670 3101 -3045 694 101 0 0 chr11 13706707 13706796 -135076676 - 5S rRNA rRNA -31 90 2 281 325 25 25 chr11 13707185 13707342 -135076130 + MLT1J LTR MaLR 347 503 -8 355 305 51 25 chr11 13707954 13708072 -135075400 - LTR33A LTR ERVL -345 178 58 399 297 42 18 chr11 13708289 13708454 -135075018 - LTR33 LTR ERVL -22 499 331 1529 210 82 2 chr11 13708454 13708897 -135074575 + MLT1F LTR MaLR 1 465 -77 1829 289 75 13 chr11 13708965 13709580 -135073892 - MLT2F LTR ERVL -10 653 1 957 307 52 40 chr11 13709613 13710280 -135073192 + L1ME4a LINE L1 3739 4414 -1732 1630 226 9 0 chr11 13710282 13710623 -135072849 - L1MC4 LINE L1 -467 7575 7232 629 305 93 28 chr11 13710641 13711038 -135072434 + L1ME4a LINE L1 5491 5913 -208 21 82 0 0 chr11 13711157 13711206 -135072266 + AT_rich Low_complexity Low_complexity 1 49 0 2819 106 48 14 chr11 13711651 13712065 -135071407 + MSTA LTR MaLR 1 428 0 282 289 178 22 chr11 13712086 13712221 -135071251 + MIR3 SINE MIR 46 201 -7 224 238 32 16 chr11 13712981 13713044 -135070428 - MIR SINE MIR -128 134 71 442 236 0 0 chr11 13713145 13713234 -135070238 - L2 LINE L2 0 3272 3184 2813 84 6 0 chr11 13713368 13713726 -135069746 - L1PB1 LINE L1 0 6151 5792 642 132 0 0 chr11 13713832 13713923 -135069549 + FRAM SINE Alu 74 164 -12 279 254 17 0 chr11 13713940 13713999 -135069473 + L2 LINE L2 3223 3282 -31 1007 224 72 99 chr11 13713999 13714521 -135068951 + MLT1H LTR MaLR 1 549 0 1999 190 3 6 chr11 13715205 13715553 -135067919 + MLT1A1 LTR MaLR 19 365 0 510 184 122 10 chr11 13716140 13716238 -135067234 - MER81 DNA DNA -1 113 5 326 235 24 12 chr11 13716331 13716416 -135067056 + MIR SINE MIR 128 213 -49 261 348 0 11 chr11 13716957 13717049 -135066423 + MER5A DNA MER1_type 95 185 -4 224 345 53 18 chr11 13717047 13717160 -135066312 + L2 LINE L2 3144 3260 -12 * 291 295 152 9 chr11 13718418 13718523 -135064949 + L2 LINE L2 3151 3270 -2 307 232 49 49 chr11 13718546 13718628 -135064844 - MIR SINE MIR -118 144 63 2611 119 86 0 chr11 13719285 13719679 -135063793 - MSTA LTR MaLR 0 428 1 549 224 22 30 chr11 13719735 13719869 -135063603 - MER117 DNA MER1_type -61 136 4 12570 25 0 0 chr11 13722378 13723997 -135059475 - L1P1 LINE L1 -594 5561 3943 1244 253 35 59 chr11 13724020 13724511 -135058961 + L1M4 LINE L1 3689 4167 -1979 1135 234 31 0 chr11 13724513 13724803 -135058669 + L1MC3 LINE L1 7324 7622 -163 941 169 0 0 chr11 13724932 13725113 -135058359 - FRAM SINE Alu 0 185 5 257 210 16 16 chr11 13725584 13725646 -135057826 - MER103 DNA DNA -92 74 13 22 0 0 0 chr11 13726091 13726113 -135057359 + AT_rich Low_complexity Low_complexity 1 22 0 2668 127 6 3 chr11 13726302 13726665 -135056807 - THE1B LTR MaLR 0 364 1 990 300 109 9 chr11 13726728 13727279 -135056193 - L2 LINE L2 -2 3311 2707 184 368 103 23 chr11 13727397 13727707 -135055765 + L2 LINE L2 183 517 -2797 448 350 14 32 chr11 13727751 13727971 -135055501 + L2 LINE L2 2065 2280 -1034 1774 174 3 7 chr11 13727971 13728270 -135055202 - AluSx SINE Alu -10 302 5 223 266 62 62 chr11 13728306 13728419 -135055053 + L2 LINE L2 3200 3312 -1 243 88 0 0 chr11 13728520 13728554 -135054918 + (TA)n Simple_repeat Simple_repeat 2 35 0 5544 166 7 5 chr11 13728554 13730125 -135053347 - L1P5 LINE L1 -371 5780 4204 442 198 73 0 chr11 13730133 13730229 -135053243 - L1 LINE L1 -2060 4086 3984 443 185 11 22 chr11 13730231 13730323 -135053149 - L2 LINE L2 -967 2347 2257 639 328 189 20 chr11 13730418 13731028 -135052444 - L2 LINE L2 -370 2944 2232 188 67 33 0 chr11 13731064 13731094 -135052378 + (TG)n Simple_repeat Simple_repeat 1 31 0 2043 161 24 59 chr11 13731246 13731945 -135051527 - MER4A LTR ERV1 0 689 1 283 345 59 77 chr11 13733052 13733495 -135049977 - L2 LINE L2 -3 3269 2835 420 306 15 0 chr11 13733863 13733997 -135049475 - MIR SINE MIR -121 141 6 227 31 31 0 chr11 13734530 13734562 -135048910 + (TC)n Simple_repeat Simple_repeat 2 34 0 333 0 0 0 chr11 13735323 13735360 -135048112 + (CA)n Simple_repeat Simple_repeat 1 37 0 2378 200 114 82 chr11 13737046 13737815 -135045657 - MER21B LTR ERV1 -69 794 1 1546 218 19 3 chr11 13738154 13738471 -135045001 + MER110 LTR ERV1 10 331 -160 340 333 63 35 chr11 13738623 13738797 -135044675 + L2 LINE L2 2902 3080 -192 369 309 68 65 chr11 13739804 13740128 -135043344 - L2 LINE L2 -49 3264 2940 1057 98 0 0 chr11 13740304 13740437 -135043035 - AluSq/x SINE Alu -179 133 1 600 269 32 13 chr11 13740583 13740739 -135042733 + MIR SINE MIR 2 160 -102 3070 180 12 23 chr11 13741757 13742318 -135041154 - L1MB8 LINE L1 -5 6173 5619 185 370 0 22 chr11 13742479 13742571 -135040901 - L2 LINE L2 -32 3240 3151 676 217 123 18 chr11 13742575 13742792 -135040680 - MIR SINE MIR -3 259 19 725 277 64 12 chr11 13742796 13743045 -135040427 + MIR SINE MIR 1 262 0 222 156 0 0 chr11 13743139 13743184 -135040288 + A-rich Low_complexity Low_complexity 1 45 0 187 347 13 40 chr11 13744088 13744163 -135039309 + L2 LINE L2 3112 3184 -88 354 296 80 8 chr11 13744263 13744388 -135039084 - MIR SINE MIR -72 190 57 1750 154 37 3 chr11 13744609 13744907 -135038565 + AluJb SINE Alu 1 308 -4 486 283 97 18 chr11 13745910 13746109 -135037363 + MIR SINE MIR 20 230 -32 1739 94 34 0 chr11 13746214 13746449 -135037023 - AluSp SINE Alu -70 243 1 24 0 0 0 chr11 13746636 13746660 -135036812 + AT_rich Low_complexity Low_complexity 1 24 0 2292 94 0 0 chr11 13746661 13746949 -135036523 - AluSx SINE Alu -24 288 1 621 152 0 45 chr11 13747373 13747485 -135035987 - FRAM SINE Alu -1 175 69 1171 239 81 0 chr11 13747597 13747907 -135035565 - L1ME1 LINE L1 -25 6141 5807 711 283 25 10 chr11 13747956 13748154 -135035318 + MIR SINE MIR 59 259 -3 21 0 0 0 chr11 13748154 13748175 -135035297 + AT_rich Low_complexity Low_complexity 1 21 0 539 252 0 0 chr11 13748734 13748849 -135034623 - MIR SINE MIR -118 144 30 964 196 50 10 chr11 13748850 13749049 -135034423 + MER3 DNA MER1_type 3 209 0 250 303 106 38 chr11 13749927 13750059 -135033413 - MIR SINE MIR -15 247 107 190 299 45 30 chr11 13750049 13750116 -135033356 - MIR3 SINE MIR -126 82 15 * 193 262 24 0 chr11 13750933 13750975 -135032497 - L2 LINE L2 -21 3251 3209 4316 248 80 27 chr11 13751273 13752962 -135030510 + L1ME3A LINE L1 3700 5557 -610 180 0 0 0 chr11 13752962 13752982 -135030490 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4316 248 80 27 chr11 13752982 13753626 -135029846 + L1ME3A LINE L1 5557 6165 -2 477 343 28 58 chr11 13753992 13754356 -135029116 - L2 LINE L2 -9 3263 2911 215 269 0 0 chr11 13754490 13754542 -135028930 + MIR SINE MIR 54 105 -157 2458 101 33 19 chr11 13754619 13754987 -135028485 + L1MA1 LINE L1 5930 6302 0 2704 16 0 7 chr11 13754996 13755302 -135028170 + AluY SINE Alu 1 304 -7 943 277 43 0 chr11 13756251 13756486 -135026986 - MIR SINE MIR 0 262 18 180 111 0 0 chr11 13756734 13756761 -135026711 + (T)n Simple_repeat Simple_repeat 1 27 0 225 298 18 0 chr11 13757441 13757498 -135025974 - L2 LINE L2 -16 3256 3199 245 330 110 0 chr11 13757866 13757975 -135025497 - L2 LINE L2 -2 3270 3150 1321 237 61 53 chr11 13757980 13758452 -135025020 + MLT2B3 LTR ERVL 1 547 -7 313 294 98 28 chr11 13759081 13759224 -135024248 - L2 LINE L2 -20 3293 3141 30 45 0 0 chr11 13759260 13759304 -135024168 + AT_rich Low_complexity Low_complexity 1 44 0 411 208 26 0 chr11 13759605 13759682 -135023790 + FRAM/FAM SINE Alu 11 89 -87 277 358 0 11 chr11 13759756 13759851 -135023621 - L2 LINE L2 -207 3065 2972 505 279 132 5 chr11 13760647 13760844 -135022628 - MIR SINE MIR 0 262 41 501 268 52 20 chr11 13760841 13760994 -135022478 - MIR SINE MIR -79 183 26 * 189 0 0 0 chr11 13761258 13761279 -135022193 + (T)n Simple_repeat Simple_repeat 1 21 0 1245 194 8 28 chr11 13766069 13766317 -135017155 + L1MC4 LINE L1 7454 7696 -346 1500 166 26 26 chr11 13766318 13766620 -135016852 + MER33 DNA MER1_type 1 302 -22 1279 172 52 85 chr11 13766652 13767018 -135016454 + L1MC4 LINE L1 7687 8040 -2 301 294 134 0 chr11 13767298 13767417 -135016055 + HAL1 LINE L1 1219 1353 -1154 36 0 0 0 chr11 13767428 13767464 -135016008 + AT_rich Low_complexity Low_complexity 1 36 0 2208 111 0 0 chr11 13767464 13767752 -135015720 - AluSx SINE Alu -24 288 1 282 310 123 15 chr11 13767876 13768079 -135015393 + HAL1 LINE L1 1450 1674 -833 345 308 78 75 chr11 13768716 13768773 -135014699 + L1 LINE L1 2740 2795 -3351 2671 136 44 7 chr11 13768773 13769184 -135014288 + MSTB LTR MaLR 1 426 0 345 308 78 75 chr11 13769184 13769564 -135013908 + L1 LINE L1 2795 3178 -2968 319 193 23 0 chr11 13770126 13770214 -135013258 + CT-rich Low_complexity Low_complexity 2 91 0 259 286 79 57 chr11 13770214 13770354 -135013118 + MIR SINE MIR 44 186 -76 241 344 26 7 chr11 13770435 13770586 -135012886 + L1 LINE L1 3788 3941 -2205 2451 42 0 3 chr11 13770586 13770870 -135012602 + AluY SINE Alu 14 296 -15 884 158 11 84 chr11 13771061 13771251 -135012221 - AluJb SINE Alu -2 310 135 225 244 59 50 chr11 13771344 13771463 -135012009 + L1 LINE L1 4326 4445 -1701 567 241 107 18 chr11 13772030 13772462 -135011010 - LTR33 LTR ERVL -2 519 25 257 269 51 0 chr11 13772554 13772632 -135010840 - HAL1 LINE L1 -2422 85 4 1805 188 152 5 chr11 13773003 13773418 -135010054 + MLT2B1 LTR ERVL 1 486 -34 442 31 15 15 chr11 13773418 13773483 -135009989 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 1805 188 152 5 chr11 13773483 13773509 -135009963 + MLT2B1 LTR ERVL 486 507 -13 389 326 78 8 chr11 13773820 13774065 -135009407 + L2 LINE L2 2427 2688 -626 272 263 40 10 chr11 13774174 13774273 -135009199 - L2 LINE L2 0 3313 3212 404 325 60 40 chr11 13774290 13774588 -135008884 + L1ME LINE L1 5360 5663 -458 2248 118 3 0 chr11 13774642 13774938 -135008534 - AluSx SINE Alu -15 297 1 337 319 72 14 chr11 13775947 13776085 -135007387 + MIR3 SINE MIR 18 163 -45 1034 206 143 20 chr11 13776471 13776723 -135006749 + Charlie1a DNA MER1_type 1 283 -1172 1498 138 0 40 chr11 13776731 13776978 -135006494 + L1PA8 LINE L1 7 243 -6218 4204 142 34 91 chr11 13776978 13778012 -135005460 + pTR5 LTR ERV1 745 2131 -475 183 42 0 0 chr11 13778012 13778036 -135005436 + (G)n Simple_repeat Simple_repeat 1 24 0 4204 142 34 91 chr11 13778036 13778487 -135004985 + pTR5 LTR ERV1 2131 2606 0 30945 112 9 27 chr11 13778487 13784704 -134998768 + L1PA8 LINE L1 253 6460 -27 5840 161 35 44 chr11 13784704 13785931 -134997541 + Charlie1a DNA MER1_type 240 1455 0 189 379 53 0 chr11 13786348 13786443 -134997029 - L2 LINE L2 -56 3216 3117 365 306 9 18 chr11 13787527 13787638 -134995834 + L2 LINE L2 3136 3245 -27 1591 128 68 68 chr11 13787762 13788058 -134995414 - AluJo SINE Alu -16 296 1 2303 106 0 0 chr11 13788331 13788633 -134994839 + AluSx SINE Alu 1 302 -10 695 255 109 21 chr11 13790048 13790287 -134993185 - MIR SINE MIR 0 262 3 272 296 26 17 chr11 13790921 13791036 -134992436 + T-rich Low_complexity Low_complexity 3 118 0 811 98 0 0 chr11 13791074 13791176 -134992296 + AluSx SINE Alu 1 102 -211 1508 103 25 0 chr11 13791231 13791434 -134992038 + AluSx SINE Alu 99 306 -4 646 297 91 13 chr11 13792219 13792451 -134991021 + MIR SINE MIR 13 262 0 213 271 43 29 chr11 13792794 13792864 -134990608 - MIR SINE MIR -171 91 21 418 319 122 18 chr11 13793534 13793763 -134989709 + MIR SINE MIR 8 260 -2 255 289 83 107 chr11 13795007 13795370 -134988102 - L2 LINE L2 -9 3263 2910 823 169 8 0 chr11 13795412 13795542 -134987930 + Tigger4(Zombi) DNA MER2_type 1 131 -2600 2052 118 6 72 chr11 13795545 13795908 -134987564 + Tigger4(Zombi) DNA MER2_type 2393 2731 0 250 314 109 19 chr11 13795908 13796064 -134987408 - L2 LINE L2 -466 2848 2679 186 218 36 55 chr11 13796617 13796672 -134986800 - L2 LINE L2 -18 3254 3201 377 268 0 10 chr11 13796706 13796803 -134986669 - MER46C DNA MER2_type 0 338 243 1946 115 50 4 chr11 13796860 13797138 -134986334 + AluSx SINE Alu 1 291 -21 259 229 0 71 chr11 13798334 13798404 -134985068 + L2 LINE L2 3238 3302 -11 323 324 56 7 chr11 13799147 13799289 -134984183 - L2 LINE L2 -2 3311 3163 629 239 38 19 chr11 13799531 13799690 -134983782 - MIR SINE MIR -13 249 88 760 190 57 0 chr11 13799774 13799932 -134983540 - L1MD2 LINE L1 -10 6349 6183 1675 178 10 13 chr11 13801658 13801961 -134981511 - AluJo SINE Alu -6 306 5 295 305 137 15 chr11 13802854 13802985 -134980487 + L2 LINE L2 3085 3231 -41 261 347 0 0 chr11 13803047 13803145 -134980327 + Charlie4 DNA MER1_type 1860 1957 -4 313 162 14 14 chr11 13805393 13805467 -134978005 + GA-rich Low_complexity Low_complexity 3 76 0 191 203 16 0 chr11 13807458 13807522 -134975950 + (TAGA)n Simple_repeat Simple_repeat 3 67 0 247 327 154 10 chr11 13807628 13807836 -134975636 + MIR SINE MIR 15 252 -10 234 260 52 52 chr11 13807942 13808019 -134975453 + L2 LINE L2 3169 3245 -27 737 271 72 32 chr11 13808077 13808147 -134975325 - MIR SINE MIR 0 262 196 607 252 126 6 chr11 13808147 13808306 -134975166 + MER5B DNA MER1_type 1 178 0 737 271 72 32 chr11 13808306 13808486 -134974986 - MIR SINE MIR -66 196 2 219 255 0 0 chr11 13808668 13808715 -134974757 + MIR SINE MIR 82 128 -80 363 185 15 0 chr11 13809313 13809378 -134974094 + L2 LINE L2 3246 3311 -2 640 242 81 31 chr11 13809923 13810084 -134973388 + MIR SINE MIR 7 175 -87 1688 150 6 70 chr11 13810829 13811143 -134972329 - AluJo SINE Alu -17 295 2 1799 206 194 15 chr11 13811154 13811768 -134971704 - L1MC4 LINE L1 0 8042 7239 206 192 13 51 chr11 13811771 13811849 -134971623 + (TTTA)n Simple_repeat Simple_repeat 1 75 0 2307 66 14 7 chr11 13811958 13812247 -134971225 - AluY SINE Alu -20 291 1 915 259 31 42 chr11 13812570 13812829 -134970643 - MIR SINE MIR 0 262 7 2623 139 10 10 chr11 13815319 13815729 -134967743 + L1MB5 LINE L1 5765 6174 0 377 288 142 34 chr11 13816834 13817039 -134966433 + MIR SINE MIR 2 228 -34 1991 149 10 80 chr11 13817085 13817309 -134966163 - MLT1A1 LTR MaLR 0 365 178 1876 152 0 3 chr11 13817309 13817598 -134965874 - AluJo SINE Alu -16 296 9 1991 149 10 80 chr11 13817598 13817762 -134965710 - MLT1A1 LTR MaLR -187 178 4 355 333 133 27 chr11 13817983 13818277 -134965195 + LTR16C LTR ERVL 157 481 -10 1201 219 23 0 chr11 13818328 13818543 -134964929 - MER58A DNA MER1_type 0 224 5 622 231 90 1 chr11 13818883 13819159 -134964313 - MER46C DNA MER2_type 0 338 3 814 183 157 5 chr11 13819673 13819864 -134963608 + MIR SINE MIR 8 227 -35 2244 105 3 0 chr11 13820607 13820901 -134962571 - AluSq SINE Alu -18 295 1 631 306 108 27 chr11 13821526 13822304 -134961168 + L1MC4a LINE L1 3977 4817 -1329 333 197 13 13 chr11 13822740 13822816 -134960656 + LTR33 LTR ERVL 426 501 -20 392 307 132 18 chr11 13822832 13823112 -134960360 + L1MC4a LINE L1 4967 5278 -868 229 167 48 36 chr11 13823153 13823237 -134960235 + (TA)n Simple_repeat Simple_repeat 1 85 0 21 0 0 0 chr11 13823243 13823264 -134960208 + AT_rich Low_complexity Low_complexity 1 21 0 2085 114 0 26 chr11 13823264 13823571 -134959901 - AluSx SINE Alu -13 299 1 784 294 97 20 chr11 13823653 13824077 -134959395 + L1MC4a LINE L1 5476 5819 -302 2070 154 0 0 chr11 13824223 13824529 -134958943 - AluSx SINE Alu -6 306 1 200 259 35 17 chr11 13824745 13824803 -134958669 + MIR SINE MIR 86 144 -118 257 238 0 109 chr11 13825319 13825420 -134958052 + MER89 LTR ERV1 5 94 -465 * 1583 185 51 46 chr11 13825398 13825749 -134957723 + MER89 LTR ERV1 207 559 0 520 215 52 22 chr11 13826424 13826559 -134956913 + MER103 DNA DNA 26 164 -2 298 179 77 39 chr11 13827444 13827522 -134955950 + L2 LINE L2 3191 3271 -1 251 239 106 62 chr11 13828126 13828239 -134955233 - MIR SINE MIR -10 252 135 753 281 129 33 chr11 13828460 13829313 -134954159 - L1ME3A LINE L1 -273 5897 4943 6284 158 16 40 chr11 13829324 13830364 -134953108 - L1MC1 LINE L1 -6 6327 5264 2036 139 0 10 chr11 13830364 13830675 -134952797 - AluSx SINE Alu 0 308 1 2255 93 21 0 chr11 13830679 13830969 -134952503 - AluSx SINE Alu -16 296 1 6284 158 16 40 chr11 13830969 13831514 -134951958 - L1MC1 LINE L1 -1072 5261 4759 1316 319 148 40 chr11 13831514 13831638 -134951834 + L2 LINE L2 1566 1675 -1639 954 28 0 0 chr11 13831638 13831745 -134951727 + L1PA4 LINE L1 6046 6152 -3 1316 319 148 40 chr11 13831745 13832860 -134950612 + L2 LINE L2 1675 2939 -375 2078 157 3 3 chr11 13832941 13833247 -134950225 + AluJo SINE Alu 1 306 -6 342 284 169 22 chr11 13833399 13833624 -134949848 - MIR SINE MIR 0 262 5 207 200 12 18 chr11 13834084 13834166 -134949306 - MIR SINE MIR -66 142 21 421 189 94 31 chr11 13834556 13834683 -134948789 + L1ME4a LINE L1 5970 6104 -17 749 221 16 0 chr11 13834701 13834828 -134948644 - FLAM_A SINE Alu -4 129 1 490 312 32 37 chr11 13836118 13836307 -134947165 + MIR SINE MIR 11 198 -64 611 303 93 11 chr11 13836501 13836857 -134946615 - L1ME4a LINE L1 -23 6098 5714 4417 147 55 3 chr11 13837540 13838300 -134945172 - L1PA16 LINE L1 -20 6146 5353 514 250 45 13 chr11 13838889 13839045 -134944427 + MIR SINE MIR 70 230 -32 2601 127 42 10 chr11 13839052 13839461 -134944011 + MER61B LTR ERV1 4 425 0 189 0 0 0 chr11 13839713 13839734 -134943738 + (TG)n Simple_repeat Simple_repeat 2 22 0 280 309 66 29 chr11 13839968 13840104 -134943368 + MIR SINE MIR 3 143 -119 1664 141 59 40 chr11 13840354 13840658 -134942814 - AluJo SINE Alu -1 311 2 249 196 107 0 chr11 13840702 13840758 -134942714 - MIR SINE MIR -84 178 117 263 306 116 56 chr11 13841313 13841529 -134941943 - MIR SINE MIR -14 248 20 233 289 96 0 chr11 13843070 13843153 -134940319 + L2 LINE L2 2972 3062 -210 432 318 20 7 chr11 13843248 13843396 -134940076 + MER5B DNA MER1_type 26 175 -3 451 293 0 0 chr11 13843419 13843525 -134939947 + L2 LINE L2 3208 3313 0 516 274 17 0 chr11 13843646 13843763 -134939709 + L2 LINE L2 3193 3311 -2 378 300 100 0 chr11 13843818 13843938 -134939534 + MIR3 SINE MIR 56 187 -21 3714 160 36 46 chr11 13844042 13844818 -134938654 + LTR1 LTR ERV1 1 768 -17 2259 101 0 0 chr11 13844841 13845137 -134938335 - AluSg SINE Alu -14 296 1 909 243 131 16 chr11 13845522 13845835 -134937637 + L2 LINE L2 2614 2962 -352 387 273 59 37 chr11 13846195 13846382 -134937090 - MIR SINE MIR -51 211 21 343 299 87 31 chr11 13847561 13847688 -134935784 - L2 LINE L2 0 3272 3139 687 222 52 26 chr11 13847900 13848094 -134935378 - MIR SINE MIR -32 230 32 593 304 29 58 chr11 13848095 13848408 -134935064 - L1MC4a LINE L1 -1983 5825 5522 733 256 99 67 chr11 13848716 13849282 -134934190 + MLT1L LTR MaLR 2 615 0 237 234 43 0 chr11 13849420 13849514 -134933958 + (TA)n Simple_repeat Simple_repeat 1 98 0 777 235 16 33 chr11 13849526 13849709 -134933763 - MIR SINE MIR -73 189 10 381 286 158 15 chr11 13849707 13849910 -134933562 + L2 LINE L2 2313 2544 -770 * 264 360 79 14 chr11 13850052 13850191 -134933281 + L2 LINE L2 2913 3060 -212 345 248 113 45 chr11 13851185 13851318 -134932154 + MIR SINE MIR 50 191 -71 197 245 0 38 chr11 13851984 13852037 -134931435 + L2 LINE L2 3221 3271 -1 182 203 29 101 chr11 13852589 13852658 -134930814 + MIR SINE MIR 178 241 -21 1818 158 37 79 chr11 13853323 13853703 -134929769 + MLT1A1 LTR MaLR 2 365 0 29 47 0 0 chr11 13854017 13854060 -134929412 + AT_rich Low_complexity Low_complexity 1 43 0 308 206 54 22 chr11 13854278 13854370 -134929102 - MER117 DNA MER1_type -88 109 15 404 227 93 58 chr11 13854371 13854543 -134928929 - MER104 DNA MER2_type 0 180 3 397 283 88 19 chr11 13854979 13855138 -134928334 + MIR SINE MIR 80 249 -13 433 325 60 67 chr11 13855976 13856274 -134927198 - L2 LINE L2 0 3272 2977 556 305 79 5 chr11 13856820 13857010 -134926462 - MIR SINE MIR -34 228 25 248 230 115 23 chr11 13857202 13857289 -134926183 - L2 LINE L2 -497 2817 2723 186 320 81 30 chr11 13858582 13858779 -134924693 + L2 LINE L2 2233 2439 -875 * 490 304 106 94 chr11 13858771 13858879 -134924593 - L2 LINE L2 0 3272 3167 2013 191 22 11 chr11 13858879 13859240 -134924232 + MLT1A1 LTR MaLR 1 365 0 490 304 106 94 chr11 13859240 13859627 -134923845 - L2 LINE L2 -105 3167 2773 439 224 26 35 chr11 13859661 13859777 -134923695 - L2 LINE L2 -9 3304 3190 230 317 128 12 chr11 13859808 13859972 -134923500 - L2 LINE L2 -647 2667 2485 392 350 56 54 chr11 13860049 13860495 -134922977 - L2 LINE L2 -1648 1666 1220 545 173 12 9 chr11 13860534 13860707 -134922765 + MER2 DNA MER2_type 1 211 -134 24 0 0 0 chr11 13860714 13860738 -134922734 + AT_rich Low_complexity Low_complexity 1 24 0 729 213 170 43 chr11 13860796 13861077 -134922395 + MLT1D LTR MaLR 31 347 -158 1959 143 87 15 chr11 13861077 13861173 -134922299 + MER1B DNA MER1_type 1 89 -2623 3290 69 29 40 chr11 13861173 13861622 -134921850 + MLT2A1 LTR ERVL 1 444 0 1959 143 87 15 chr11 13861622 13861846 -134921626 + MER1B DNA MER1_type 89 339 0 985 182 0 6 chr11 13861846 13862008 -134921464 + MLT1D LTR MaLR 340 500 -5 329 323 101 12 chr11 13862022 13862270 -134921202 - L2 LINE L2 -2104 1210 941 219 339 63 42 chr11 13862376 13862565 -134920907 + L2 LINE L2 2588 2780 -534 486 273 162 23 chr11 13862819 13863035 -134920437 - MIR SINE MIR 0 262 17 301 238 135 16 chr11 13863358 13863484 -134919988 - L2 LINE L2 -1064 2250 2110 660 196 153 37 chr11 13863491 13863654 -134919818 + MER20 DNA MER1_type 8 189 -30 635 244 6 6 chr11 13863657 13863833 -134919639 + L1MA9 LINE L1 5029 5204 -942 1321 171 4 13 chr11 13863834 13864062 -134919410 + AluJo SINE Alu 87 312 0 4261 179 38 52 chr11 13864068 13864672 -134918800 + L1MA9 LINE L1 5192 5786 -526 306 50 0 0 chr11 13864672 13864712 -134918760 + (TG)n Simple_repeat Simple_repeat 2 41 0 4261 179 38 52 chr11 13864712 13865188 -134918284 + L1MA9 LINE L1 5786 6267 -45 2896 163 4 6 chr11 13865211 13865677 -134917795 + LTR42 LTR ERVL 1 465 -30 407 284 147 33 chr11 13865688 13865987 -134917485 - L2 LINE L2 -1289 2025 1693 338 311 20 66 chr11 13866439 13866635 -134916837 + MER5A DNA MER1_type 3 189 0 2717 218 55 34 chr11 13866987 13867895 -134915577 - L1MCc LINE L1 -5117 1824 19 246 315 22 11 chr11 13867917 13868006 -134915466 - MIR SINE MIR -108 154 65 873 289 99 12 chr11 13868321 13868663 -134914809 - L2 LINE L2 -18 3295 2924 254 366 28 28 chr11 13868678 13868894 -134914578 + L3 LINE CR1 675 890 -687 2058 103 55 3 chr11 13869150 13869441 -134914031 + AluSq SINE Alu 1 306 -7 336 183 49 24 chr11 13869524 13869606 -134913866 + L2 LINE L2 3192 3275 -38 298 223 71 45 chr11 13870610 13870722 -134912750 + MIR SINE MIR 67 181 -81 329 378 39 0 chr11 13870758 13870885 -134912587 - L2 LINE L2 0 3272 3141 236 281 16 0 chr11 13871344 13871408 -134912064 - MIR SINE MIR -12 250 186 1025 210 62 93 chr11 13871824 13872277 -134911195 + L1ME4a LINE L1 5645 6083 -38 2076 120 63 38 chr11 13873192 13873558 -134909914 + THE1C LTR MaLR 1 375 0 407 231 103 74 chr11 13873634 13873837 -134909635 - L2 LINE L2 0 3313 3105 455 297 30 96 chr11 13874005 13874338 -134909134 - L3 LINE CR1 -553 1024 714 459 288 31 16 chr11 13874432 13874623 -134908849 + L1ME LINE L1 5577 5770 -351 591 281 62 53 chr11 13875050 13875391 -134908081 - L2 LINE L2 -15 3298 2955 33631 102 15 56 chr11 13875837 13882485 -134900987 + L1PA7 LINE L1 2 6154 0 460 221 11 0 chr11 13882719 13882814 -134900658 + L2 LINE L2 3176 3271 -1 414 241 18 112 chr11 13883085 13883255 -134900217 + MIR SINE MIR 90 243 -19 892 269 44 8 chr11 13883288 13883537 -134899935 + MIR SINE MIR 4 261 -1 1195 166 11 5 chr11 13883691 13883878 -134899594 - MER5A DNA MER1_type -1 188 1 232 170 19 19 chr11 13884008 13884061 -134899411 - L2 LINE L2 0 3313 3261 2387 165 28 5 chr11 13884158 13884545 -134898927 + MSTD LTR MaLR 1 396 0 559 198 26 141 chr11 13884558 13884750 -134898722 + MIR SINE MIR 90 259 -3 189 357 21 42 chr11 13885380 13885523 -134897949 - L3b LINE CR1 -324 1259 1120 625 221 35 14 chr11 13886409 13886554 -134896918 + MLT1J2 LTR MaLR 1 148 -302 1048 166 148 42 chr11 13886580 13886656 -134896816 - MER44D DNA MER2_type -1907 584 517 306 0 0 0 chr11 13886656 13886690 -134896782 + (CATA)n Simple_repeat Simple_repeat 3 36 0 1048 166 148 42 chr11 13886690 13886896 -134896576 - MER44D DNA MER2_type -1974 517 2 771 281 100 21 chr11 13886896 13887165 -134896307 + MLT1J2 LTR MaLR 146 436 -14 2468 93 0 0 chr11 13887231 13887542 -134895930 + AluY SINE Alu 1 311 0 341 315 84 14 chr11 13887643 13887786 -134895686 + L2 LINE L2 3111 3263 -9 332 364 8 0 chr11 13887855 13887987 -134895485 - MIR3 SINE MIR -5 203 71 551 53 0 0 chr11 13888239 13888314 -134895158 + L1PA4 LINE L1 6081 6155 0 2178 105 10 3 chr11 13888516 13888810 -134894662 + AluSx SINE Alu 1 296 -16 534 272 31 57 chr11 13889191 13889419 -134894053 + LTR16A1 LTR ERVL 208 429 -28 1932 203 45 7 chr11 13889435 13889853 -134893619 + MLT1C LTR MaLR 34 467 0 250 321 0 0 chr11 13890228 13890312 -134893160 + MIR SINE MIR 131 214 -48 2993 248 42 25 chr11 13890474 13890819 -134892653 + L1ME3A LINE L1 4519 4857 -1313 531 106 0 59 chr11 13890819 13890904 -134892568 + MADE1 DNA Mariner 1 80 0 2993 248 42 25 chr11 13890904 13892167 -134891305 + L1ME3A LINE L1 4857 6163 -7 328 269 244 6 chr11 13892700 13892860 -134890612 + MIR SINE MIR 50 247 -15 296 215 0 11 chr11 13892868 13892961 -134890511 + (ATG)n Simple_repeat Simple_repeat 3 94 0 468 331 20 0 chr11 13893312 13893460 -134890012 + L2 LINE L2 3121 3271 -1 405 307 41 83 chr11 13893576 13893915 -134889557 - L2 LINE L2 -20 3252 2928 199 323 21 37 chr11 13893967 13894156 -134889316 - L2 LINE L2 -452 2862 2677 386 301 67 23 chr11 13894987 13895168 -134888304 + MIR SINE MIR 28 216 -46 22 0 0 0 chr11 13895182 13895204 -134888268 + AT_rich Low_complexity Low_complexity 1 22 0 281 238 83 0 chr11 13895204 13895288 -134888184 + MIR SINE MIR 120 210 -52 383 340 29 29 chr11 13895623 13895829 -134887643 + MLT1K LTR MaLR 216 421 -167 702 237 41 12 chr11 13895902 13896071 -134887401 + MLT1K LTR MaLR 412 585 -3 830 310 172 18 chr11 13896239 13896920 -134886552 + L3 LINE CR1 576 1361 -216 23 0 0 0 chr11 13897307 13897330 -134886142 + AT_rich Low_complexity Low_complexity 1 23 0 708 285 158 12 chr11 13897858 13898275 -134885197 - L2 LINE L2 -9 3304 2827 1657 182 7 23 chr11 13899457 13899759 -134883713 - AluJb SINE Alu -15 297 1 806 298 14 39 chr11 13899878 13900157 -134883315 + MLT1J LTR MaLR 1 272 -239 848 216 129 14 chr11 13900207 13900494 -134882978 - MER33 DNA MER1_type 0 324 5 275 196 18 0 chr11 13900503 13900559 -134882913 + MLT1J LTR MaLR 325 381 -130 191 77 0 77 chr11 13901297 13901336 -134882136 + (T)n Simple_repeat Simple_repeat 1 36 0 563 292 50 10 chr11 13901661 13901863 -134881609 + MIR SINE MIR 15 224 -38 434 291 62 4 chr11 13901914 13902141 -134881331 - MIR SINE MIR -4 258 8 304 209 219 19 chr11 13903869 13903974 -134879498 - MIR SINE MIR -67 141 16 204 97 0 0 chr11 13906115 13906146 -134877326 + (AGCTG)n Simple_repeat Simple_repeat 3 33 0 218 298 28 35 chr11 13906432 13906573 -134876899 - MIR SINE MIR -6 256 117 995 175 134 0 chr11 13906680 13906897 -134876575 - ORSL DNA AcHobo -27 248 3 280 325 75 0 chr11 13907055 13907175 -134876297 + MIR3 SINE MIR 33 161 -47 185 244 59 67 chr11 13907573 13907692 -134875780 + L2 LINE L2 1882 1999 -1315 196 335 70 0 chr11 13907788 13907868 -134875604 - L2 LINE L2 -3 3310 3237 300 120 0 0 chr11 13907868 13907918 -134875554 + (TCCA)n Simple_repeat Simple_repeat 4 53 0 196 335 70 0 chr11 13907918 13908029 -134875443 - L2 LINE L2 -76 3237 3117 418 282 72 72 chr11 13908619 13909043 -134874429 + L2 LINE L2 2555 3061 -211 347 141 16 0 chr11 13909098 13909162 -134874310 + CT-rich Low_complexity Low_complexity 3 67 0 835 176 0 0 chr11 13909182 13909313 -134874159 - FLAM_C SINE Alu -1 132 2 369 308 14 21 chr11 13909377 13909520 -134873952 + L2 LINE L2 3171 3312 -1 276 286 110 0 chr11 13910233 13910324 -134873148 + MER5A DNA MER1_type 2 102 -87 464 197 161 29 chr11 13914762 13914899 -134868573 - MIR SINE MIR -24 238 84 414 183 12 12 chr11 13915634 13915716 -134867756 + L2 LINE L2 3191 3272 0 654 257 10 35 chr11 13915848 13916050 -134867422 + L2 LINE L2 3113 3309 -4 242 260 0 39 chr11 13916111 13916188 -134867284 - L3 LINE CR1 -159 1418 1345 2628 193 99 0 chr11 13916232 13916739 -134866733 + MLT1F1 LTR MaLR 1 557 -10 214 307 40 40 chr11 13916805 13916906 -134866566 - L3 LINE CR1 -403 1174 1074 620 325 27 25 chr11 13917505 13917763 -134865709 + MIR SINE MIR 4 262 0 336 274 203 0 chr11 13917764 13917917 -134865555 - L3 LINE CR1 -789 788 605 241 302 38 19 chr11 13917996 13918102 -134865370 - L3 LINE CR1 -996 581 474 958 66 1 4 chr11 13918103 13918227 -134865245 + L1M4 LINE L1 5646 5767 -398 1326 60 6 0 chr11 13918227 13918391 -134865081 + L1PA5 LINE L1 5986 6153 -1 552 277 74 76 chr11 13918624 13919125 -134864347 + MLT1J LTR MaLR 1 500 -11 2771 160 2 32 chr11 13919358 13919821 -134863651 + MER70A LTR ERVL 24 472 0 221 81 0 27 chr11 13920691 13920728 -134862744 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1193 62 0 0 chr11 13920728 13920873 -134862599 - MER107 DNA MER1_type -52 145 1 1020 261 110 0 chr11 13920877 13921141 -134862331 - MER58B DNA MER1_type -48 293 1 205 410 0 0 chr11 13921693 13921793 -134861679 + L2 LINE L2 3148 3247 -25 777 267 102 39 chr11 13921858 13922191 -134861281 - MLT1L LTR MaLR -115 500 147 1096 156 0 95 chr11 13922194 13922383 -134861089 + MER20 DNA MER1_type 5 170 -49 2349 113 0 3 chr11 13922383 13922693 -134860779 + AluSc SINE Alu 1 309 0 1096 156 0 95 chr11 13922693 13922734 -134860738 + MER20 DNA MER1_type 170 213 -6 379 188 23 188 chr11 13922740 13922916 -134860556 - MLT1L LTR MaLR -461 154 8 240 328 43 0 chr11 13923177 13923293 -134860179 - MIR SINE MIR -31 231 111 489 251 62 34 chr11 13924423 13924638 -134858834 - MLT1H LTR MaLR -2 548 329 1151 177 107 69 chr11 13926079 13926454 -134857018 - MLT1E1 LTR MaLR 0 654 190 1724 179 0 7 chr11 13926454 13926745 -134856727 + AluJo SINE Alu 1 289 -23 1151 177 107 69 chr11 13926745 13926943 -134856529 - MLT1E1 LTR MaLR -464 190 1 2069 117 4 0 chr11 13927108 13927413 -134856059 - AluSq SINE Alu 0 306 1 192 40 0 0 chr11 13927417 13927442 -134856030 + (TTA)n Simple_repeat Simple_repeat 1 25 0 460 276 59 6 chr11 13927603 13927773 -134855699 - MIR SINE MIR -30 232 54 42758 59 3 4 chr11 13929337 13932276 -134851196 + L1P2 LINE L1 1 2930 -3224 2577 68 0 0 chr11 13932276 13932584 -134850888 + AluY SINE Alu 2 309 -2 42758 59 3 4 chr11 13932584 13935412 -134848060 + L1P2 LINE L1 2930 5760 -394 1572 315 93 28 chr11 14135447 14135554 -134647918 + L2 LINE L2 1988 2087 -1227 1345 201 37 0 chr11 14135554 14135853 -134647619 - L1MA6 LINE L1 0 6300 5991 1572 315 93 28 chr11 14135853 14136530 -134646942 + L2 LINE L2 2087 2823 -491 2257 68 0 17 chr11 14136632 14136926 -134646546 - AluY SINE Alu -22 289 1 35 24 0 0 chr11 14137624 14137666 -134645806 + AT_rich Low_complexity Low_complexity 1 42 0 1891 168 0 3 chr11 14137722 14138020 -134645452 - AluSx SINE Alu -15 297 1 2413 81 0 0 chr11 14138226 14138523 -134644949 + AluSx SINE Alu 1 297 -15 925 117 4 18 chr11 14138569 14138817 -134644655 + AluSx SINE Alu 1 301 -11 874 127 0 15 chr11 14139486 14139620 -134643852 - FLAM_C SINE Alu 0 133 2 3223 60 22 44 chr11 14139732 14139944 -134643528 + MLT2A1 LTR ERVL 1 216 -228 2257 103 0 7 chr11 14139944 14140246 -134643226 + AluSq SINE Alu 1 300 -13 3223 60 22 44 chr11 14140246 14140487 -134642985 + MLT2A1 LTR ERVL 216 444 0 2104 106 7 0 chr11 14140922 14141245 -134642227 + AluSp SINE Alu 1 325 0 234 294 193 0 chr11 14141471 14141580 -134641892 - MIR SINE MIR -19 243 114 476 308 73 21 chr11 14141605 14141839 -134641633 + MIR SINE MIR 14 259 -3 1709 151 4 0 chr11 14142366 14142624 -134640848 - AluJb SINE Alu -9 303 45 1491 85 10 10 chr11 14142725 14142924 -134640548 + AluSc SINE Alu 97 295 -14 763 160 24 0 chr11 14142964 14143089 -134640383 - FLAM_C SINE Alu -3 130 3 1330 181 79 29 chr11 14143106 14143383 -134640089 - AluJo SINE Alu -21 291 1 234 0 0 0 chr11 14143435 14143461 -134640011 + (A)n Simple_repeat Simple_repeat 1 26 0 512 231 116 0 chr11 14144068 14144215 -134639257 + MER103 DNA DNA 3 166 0 186 43 0 0 chr11 14144452 14144475 -134638997 + (T)n Simple_repeat Simple_repeat 1 23 0 2470 64 0 0 chr11 14145232 14145528 -134637944 + AluY SINE Alu 1 296 -15 22 35 0 0 chr11 14145723 14145752 -134637720 + AT_rich Low_complexity Low_complexity 1 29 0 22 70 0 0 chr11 14145783 14145826 -134637646 + AT_rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr11 14146163 14146192 -134637280 + AT_rich Low_complexity Low_complexity 1 29 0 1314 109 0 6 chr11 14146346 14146521 -134636951 - AluSg/x SINE Alu -7 305 132 2326 82 7 20 chr11 14147035 14147339 -134636133 - AluSx SINE Alu -12 300 1 427 177 91 0 chr11 14147379 14147480 -134635992 + L1ME1 LINE L1 6065 6182 -2 200 343 19 19 chr11 14147483 14147588 -134635884 + L2 LINE L2 3126 3230 -83 25 65 0 0 chr11 14147650 14147696 -134635776 + AT_rich Low_complexity Low_complexity 1 46 0 2109 138 0 3 chr11 14147889 14148187 -134635285 - AluSx SINE Alu -14 298 2 1852 138 50 0 chr11 14148792 14149075 -134634397 - AluJb SINE Alu -15 297 1 782 263 52 0 chr11 14149709 14149903 -134633569 - MIR SINE MIR -14 248 45 2140 135 15 9 chr11 14150077 14150417 -134633055 + MER2 DNA MER2_type 2 343 -1 2292 107 0 3 chr11 14150495 14150803 -134632669 - AluSg SINE Alu -3 307 1 413 349 198 31 chr11 14150841 14151580 -134631892 + L2 LINE L2 1397 2011 -1303 2122 129 3 10 chr11 14151580 14151891 -134631581 - AluSx SINE Alu -3 309 1 413 349 198 31 chr11 14151891 14152420 -134631052 + L2 LINE L2 2011 2877 -437 363 331 54 24 chr11 14152920 14153086 -134630386 + L2 LINE L2 3102 3272 0 432 0 0 0 chr11 14153334 14153382 -134630090 + (CA)n Simple_repeat Simple_repeat 2 49 0 1127 168 0 11 chr11 14153610 14153801 -134629671 - AluJo SINE Alu -18 294 106 5118 151 32 12 chr11 14155278 14156339 -134627133 + L1MB3 LINE L1 5099 6183 0 22 35 0 0 chr11 14156341 14156370 -134627102 + AT_rich Low_complexity Low_complexity 1 29 0 1753 179 3 7 chr11 14157261 14157562 -134625910 - AluJo SINE Alu -6 306 7 544 265 236 18 chr11 14158167 14158658 -134624814 - L1MC4 LINE L1 -84 7958 7361 255 175 63 32 chr11 14158852 14158915 -134624557 + L1MEc LINE L1 415 479 -5917 1068 272 70 19 chr11 14158959 14159171 -134624301 + L1MEc LINE L1 1254 1454 -4942 414 0 0 0 chr11 14159171 14159217 -134624255 + (CA)n Simple_repeat Simple_repeat 2 47 0 1068 272 70 19 chr11 14159217 14159522 -134623950 + L1MEc LINE L1 1454 1797 -4599 2212 85 0 14 chr11 14159907 14160202 -134623270 + AluSq SINE Alu 1 291 -22 8888 123 40 19 chr11 14160429 14161238 -134622234 - Tigger1 DNA MER2_type -946 1472 620 2094 108 30 3 chr11 14161238 14161533 -134621939 - AluSg SINE Alu -4 306 4 8888 123 40 19 chr11 14161533 14162166 -134621306 - Tigger1 DNA MER2_type -1798 620 1 358 270 176 0 chr11 14162166 14162312 -134621160 + MER2 DNA MER2_type 174 345 0 182 225 0 0 chr11 14162708 14162748 -134620724 + L2 LINE L2 3271 3310 -3 2330 100 7 0 chr11 14163085 14163395 -134620077 + AluSx SINE Alu 1 312 0 445 242 100 0 chr11 14163521 14163641 -134619831 + MIR SINE MIR 117 248 -14 311 258 57 6 chr11 14164363 14164473 -134618999 + MIR SINE MIR 2 143 -65 408 335 21 53 chr11 14164723 14164911 -134618561 - MIR3 SINE MIR -17 191 10 186 43 0 0 chr11 14165031 14165054 -134618418 + (T)n Simple_repeat Simple_repeat 1 23 0 807 61 35 0 chr11 14165389 14165503 -134617969 + AluY SINE Alu 16 133 -178 397 119 17 0 chr11 14165701 14165760 -134617712 + U7 snRNA snRNA 2 61 -2 216 0 0 0 chr11 14165766 14165790 -134617682 + (A)n Simple_repeat Simple_repeat 1 24 0 1582 189 10 17 chr11 14166611 14166912 -134616560 - AluJo SINE Alu -13 299 1 21 71 0 0 chr11 14167507 14167549 -134615923 + AT_rich Low_complexity Low_complexity 1 42 0 298 275 91 42 chr11 14168122 14168406 -134615066 + L1MC4a LINE L1 7315 7636 -172 725 219 269 12 chr11 14168510 14168602 -134614870 - L1MC4 LINE L1 -11 8031 7964 2085 124 3 13 chr11 14168602 14168900 -134614572 - AluSx SINE Alu -17 295 1 725 219 269 12 chr11 14168900 14169127 -134614345 - L1MC4 LINE L1 -78 7964 7630 2365 85 0 3 chr11 14169349 14169644 -134613828 - AluSx SINE Alu -18 294 1 284 0 28 0 chr11 14170032 14170068 -134613404 + (CA)n Simple_repeat Simple_repeat 1 37 0 22 56 0 0 chr11 14170410 14170446 -134613026 + AT_rich Low_complexity Low_complexity 1 36 0 3064 189 71 46 chr11 14170476 14171249 -134612223 + L1MC4a LINE L1 6947 7744 -64 2233 113 0 3 chr11 14171249 14171551 -134611921 + AluSc SINE Alu 4 304 -5 3064 189 71 46 chr11 14171551 14171618 -134611854 + L1MC4a LINE L1 7744 7808 0 1219 163 69 105 chr11 14171823 14172129 -134611343 - AluJo SINE Alu -6 296 2 691 195 0 0 chr11 14172152 14172275 -134611197 - FLAM_C SINE Alu -20 123 1 1977 111 52 85 chr11 14172278 14172373 -134611099 - Tigger2a DNA MER2_type -2334 374 277 2034 123 17 3 chr11 14172373 14172665 -134610807 + AluSx SINE Alu 1 296 -16 1977 111 52 85 chr11 14172665 14172956 -134610516 - Tigger2a DNA MER2_type -2431 277 1 2248 114 3 0 chr11 14174203 14174511 -134608961 + AluSg SINE Alu 1 309 -1 25 31 0 0 chr11 14175180 14175212 -134608260 + AT_rich Low_complexity Low_complexity 1 32 0 3970 166 22 9 chr11 14175964 14176705 -134606767 + L1MB3 LINE L1 5427 6176 -7 23 0 0 0 chr11 14177105 14177128 -134606344 + AT_rich Low_complexity Low_complexity 1 23 0 2140 117 3 3 chr11 14177595 14177894 -134605578 - AluSg SINE Alu -9 301 3 954 115 8 0 chr11 14177897 14178027 -134605445 - AluSc SINE Alu -54 255 125 2253 117 0 0 chr11 14178269 14178577 -134604895 + AluSq SINE Alu 1 308 -5 483 272 10 77 chr11 14178709 14178904 -134604568 - MER102a DNA MER1_type -9 321 140 284 277 121 15 chr11 14179947 14180102 -134603370 + MIR3 SINE MIR 2 176 -32 328 256 0 12 chr11 14180770 14180852 -134602620 + L3 LINE CR1 1317 1397 -180 1009 113 0 0 chr11 14180934 14181067 -134602405 - AluSq/x SINE Alu -177 135 3 24 0 0 0 chr11 14181656 14181680 -134601792 + AT_rich Low_complexity Low_complexity 1 24 0 6871 119 30 7 chr11 14181740 14183722 -134599750 + L1MA2 LINE L1 4277 6303 -1 301 221 92 107 chr11 14184946 14185077 -134598395 + L1MDb LINE L1 597 725 -5684 629 225 127 6 chr11 14185361 14185534 -134597938 + MLT1L LTR MaLR 422 615 0 38956 81 13 7 chr11 14186035 14192149 -134591323 - L1PA6 LINE L1 -1 6153 11 334 327 10 10 chr11 14193012 14193113 -134590359 - MIR SINE MIR -155 107 7 550 240 53 0 chr11 14194917 14195067 -134588405 + Tigger8 DNA MER2_type 335 492 -174 2009 166 130 6 chr11 14196161 14196629 -134586843 - L1MC4a LINE L1 -2 7806 5815 1929 143 14 7 chr11 14197282 14197575 -134585897 - AluJo SINE Alu -17 295 1 2273 80 0 14 chr11 14197990 14198276 -134585196 - AluSx SINE Alu -19 293 12 339 25 0 0 chr11 14198454 14198494 -134584978 + (TG)n Simple_repeat Simple_repeat 1 40 0 183 246 88 0 chr11 14198833 14198890 -134584582 - MIR SINE MIR -93 115 54 2307 48 65 3 chr11 14198990 14199283 -134584189 - AluY SINE Alu 0 311 1 26 0 0 0 chr11 14199293 14199319 -134584153 + AT_rich Low_complexity Low_complexity 1 26 0 2353 89 0 7 chr11 14199319 14199612 -134583860 - AluSp SINE Alu -22 291 1 21 0 0 0 chr11 14200721 14200742 -134582730 + AT_rich Low_complexity Low_complexity 1 21 0 586 144 16 176 chr11 14200742 14200992 -134582480 + Tigger2 DNA MER2_type 1 210 -2508 1696 182 0 19 chr11 14200992 14201300 -134582172 + AluJo SINE Alu 1 302 -10 829 188 40 0 chr11 14201310 14201459 -134582013 + Tigger2 DNA MER2_type 2554 2708 -10 782 218 65 123 chr11 14201962 14202411 -134581061 + MLT1H LTR MaLR 120 542 -7 2372 76 3 3 chr11 14202432 14202735 -134580737 - AluSc SINE Alu -6 303 1 1955 242 166 98 chr11 14203371 14204748 -134578724 + L2 LINE L2 1201 2671 -643 333 102 0 0 chr11 14204764 14204813 -134578659 - AluSx SINE Alu -6 295 247 1196 121 0 0 chr11 14204813 14204970 -134578502 - AluSx SINE Alu -155 157 1 2574 45 0 29 chr11 14204983 14205292 -134578180 - AluY SINE Alu -11 300 1 1035 280 149 23 chr11 14205293 14205887 -134577585 + L2 LINE L2 2664 3311 -2 3011 226 118 11 chr11 14206568 14206654 -134576818 + L1M4 LINE L1 3626 3701 -2445 225 0 0 0 chr11 14206654 14206679 -134576793 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 3011 226 118 11 chr11 14206679 14207362 -134576110 + L1M4 LINE L1 3701 4501 -1645 2367 90 3 0 chr11 14207362 14207663 -134575809 + AluSp SINE Alu 1 302 -11 3011 226 118 11 chr11 14207663 14207767 -134575705 + L1M4 LINE L1 4501 4593 -1553 816 273 125 29 chr11 14207788 14208099 -134575373 + MER68 LTR ERV1 215 555 -7 237 130 87 0 chr11 14208122 14208168 -134575304 - MER103 DNA DNA -114 52 3 181 315 41 27 chr11 14208561 14208634 -134574838 + MER5A DNA MER1_type 76 149 -40 21 0 0 0 chr11 14208711 14208732 -134574740 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr11 14208802 14208822 -134574650 + (A)n Simple_repeat Simple_repeat 1 20 0 23 54 0 0 chr11 14209017 14209054 -134574418 + AT_rich Low_complexity Low_complexity 1 37 0 1006 183 29 14 chr11 14210511 14210719 -134572753 + MER33 DNA MER1_type 6 216 -108 1763 87 0 0 chr11 14210822 14211041 -134572431 - AluSq SINE Alu -12 301 83 21 0 0 0 chr11 14211219 14211240 -134572232 + AT_rich Low_complexity Low_complexity 1 21 0 2372 88 7 0 chr11 14211240 14211535 -134571937 + AluSx SINE Alu 1 297 -15 1781 164 10 3 chr11 14212702 14212995 -134570477 - AluJo SINE Alu -17 295 1 1424 214 55 48 chr11 14213021 14213442 -134570030 - L1MA9 LINE L1 -39 6273 5850 242 301 43 11 chr11 14214339 14214432 -134569040 + MIR3 SINE MIR 85 180 -28 314 23 186 0 chr11 14215442 14215485 -134567987 - MADE1 DNA Mariner -2 78 28 237 289 175 21 chr11 14215571 14215668 -134567804 + L2 LINE L2 3141 3252 -20 1405 171 45 34 chr11 14215772 14215895 -134567577 + AluJo SINE Alu 1 121 -191 210 105 0 0 chr11 14215895 14215933 -134567539 + (TAA)n Simple_repeat Simple_repeat 2 39 0 1405 171 45 34 chr11 14215933 14216101 -134567371 + AluJo SINE Alu 121 295 -17 2243 59 63 0 chr11 14216101 14216386 -134567086 + AluSg SINE Alu 1 304 -6 413 219 63 0 chr11 14216387 14216496 -134566976 - L1ME LINE L1 -539 5583 5470 284 284 25 0 chr11 14216540 14216621 -134566851 + L2 LINE L2 3231 3313 0 902 273 80 36 chr11 14216807 14217330 -134566142 - L1ME4a LINE L1 -296 5825 5280 447 225 0 0 chr11 14217512 14217592 -134565880 + L2 LINE L2 3234 3313 0 1896 164 0 3 chr11 14217875 14218168 -134565304 - AluJo SINE Alu -20 292 1 1944 140 27 0 chr11 14218188 14218480 -134564992 - AluJo SINE Alu -12 300 1 665 188 30 38 chr11 14218591 14218724 -134564748 + AluJo SINE Alu 2 133 -169 189 171 0 0 chr11 14218739 14218774 -134564698 + GA-rich Low_complexity Low_complexity 4 38 0 532 188 0 0 chr11 14218778 14218858 -134564614 + AluJo SINE Alu 130 209 -103 1409 176 113 74 chr11 14218858 14219291 -134564181 + LTR7 LTR ERV1 1 450 0 712 161 35 7 chr11 14219291 14219434 -134564038 + HERVH LTR ERV1 1 147 -7566 * 13922 104 13 8 chr11 14219431 14221470 -134562002 + HERVH LTR ERV1 1945 3993 -3720 6081 122 5 4 chr11 14221453 14222375 -134561097 + HERVH LTR ERV1 3995 5287 -1804 * 281 29 0 0 chr11 14222374 14222408 -134561064 + HERVH LTR ERV1 4882 4915 -2798 * 1507 173 8 0 chr11 14222405 14222671 -134560801 + HERVH LTR ERV1 5749 6016 -1697 * 3522 114 14 23 chr11 14222664 14223226 -134560246 + HERVH LTR ERV1 7157 7713 0 1329 170 119 77 chr11 14223227 14223656 -134559816 + LTR7 LTR ERV1 2 448 -2 472 89 241 0 chr11 14223660 14223739 -134559733 + AluJo SINE Alu 205 302 -10 493 176 40 101 chr11 14224544 14224692 -134558780 + L2 LINE L2 3175 3313 0 2313 110 0 0 chr11 14225219 14225518 -134557954 + AluSg SINE Alu 1 299 -11 597 292 123 9 chr11 14225685 14225732 -134557740 + LTR33 LTR ERVL 1 41 -480 2315 145 47 0 chr11 14225732 14226054 -134557418 - L1PA16 LINE L1 0 6166 5824 1835 175 10 0 chr11 14226054 14226357 -134557115 - AluJb SINE Alu -6 306 1 2315 145 47 0 chr11 14226357 14226393 -134557079 - L1PA16 LINE L1 -342 5824 5791 597 292 123 9 chr11 14226393 14226564 -134556908 + LTR33 LTR ERVL 41 244 -277 416 219 34 50 chr11 14226940 14227059 -134556413 - MLT1L LTR MaLR -325 290 174 227 239 14 42 chr11 14227110 14227181 -134556291 - MLT1L LTR MaLR -542 73 5 441 0 0 0 chr11 14227321 14227370 -134556102 + (TC)n Simple_repeat Simple_repeat 1 49 0 506 302 111 5 chr11 14227727 14227916 -134555556 + MIR SINE MIR 23 231 -31 581 240 52 70 chr11 14227940 14228169 -134555303 - L2 LINE L2 -89 3224 3000 418 260 0 19 chr11 14228195 14228299 -134555173 - L2 LINE L2 -2 3311 3210 2315 83 0 0 chr11 14228299 14228589 -134554883 + AluY SINE Alu 1 290 -21 207 0 0 0 chr11 14228606 14228629 -134554843 + (GA)n Simple_repeat Simple_repeat 2 24 0 3849 144 65 73 chr11 14228713 14230097 -134553375 - pTR5 LTR ERV1 0 2438 66 314 288 96 35 chr11 14230365 14230563 -134552909 + L2 LINE L2 1837 2046 -1268 2549 147 40 7 chr11 14230616 14231066 -134552406 - L1MB3 LINE L1 -2 6181 5717 1323 166 67 107 chr11 14231140 14231513 -134551959 + LTR47B LTR ERVL 1 358 -85 587 207 7 0 chr11 14231520 14231655 -134551817 + (TA)n Simple_repeat Simple_repeat 2 137 0 924 247 96 53 chr11 14231655 14232032 -134551440 - L2 LINE L2 -97 3216 2824 652 302 31 36 chr11 14232061 14232283 -134551189 - L2 LINE L2 -350 2964 2744 273 323 48 118 chr11 14232688 14233044 -134550428 + L2 LINE L2 2941 3271 -1 437 263 225 10 chr11 14233140 14233349 -134550123 - MIR SINE MIR 0 262 9 754 266 109 46 chr11 14233389 14233848 -134549624 - LTR33A LTR ERVL -24 499 12 1864 127 0 4 chr11 14233962 14234229 -134549243 + AluSc SINE Alu 39 304 -5 2194 124 0 0 chr11 14234536 14234834 -134548638 - AluSx SINE Alu -14 298 1 248 288 12 25 chr11 14235024 14235104 -134548368 - MER5B DNA MER1_type -50 128 50 318 161 0 36 chr11 14235110 14235166 -134548306 - MER31A LTR ERV1 -82 403 350 235 245 0 19 chr11 14235170 14235223 -134548249 - MER5B DNA MER1_type -126 52 1 258 56 0 0 chr11 14236456 14236492 -134546980 + (A)n Simple_repeat Simple_repeat 1 36 0 225 221 21 11 chr11 14237734 14237829 -134545643 + GA-rich Low_complexity Low_complexity 1 96 0 2121 117 3 41 chr11 14238153 14238469 -134545003 + AluSx SINE Alu 1 304 -8 197 33 33 0 chr11 14238502 14238532 -134544940 + (TTG)n Simple_repeat Simple_repeat 1 31 0 338 187 120 13 chr11 14238545 14238620 -134544852 + MER69 DNA AcHobo 1 62 -115 477 193 82 7 chr11 14238746 14238881 -134544591 + MER69 DNA AcHobo 2381 2525 -1 851 287 64 38 chr11 14238982 14239355 -134544117 + MLT1K LTR MaLR 206 588 0 524 216 0 61 chr11 14239460 14239608 -134543864 - MIR SINE MIR -41 221 83 507 335 85 46 chr11 14240334 14240907 -134542565 - L2 LINE L2 -1 3271 2675 1106 210 163 70 chr11 14241413 14241842 -134541630 + MLT1D LTR MaLR 18 486 -19 184 233 256 22 chr11 14241945 14242035 -134541437 + MIR SINE MIR 86 196 -66 1921 60 8 4 chr11 14242750 14243001 -134540471 - L1PA7 LINE L1 -1 6153 5902 956 249 19 5 chr11 14243169 14243374 -134540098 + MIR SINE MIR 7 214 -48 384 264 32 19 chr11 14243426 14243581 -134539891 - L2 LINE L2 -2421 893 737 712 227 4 134 chr11 14243582 14243844 -134539628 + MIR SINE MIR 12 238 -24 8495 48 0 21 chr11 14243844 14245718 -134537754 + L1PA5 LINE L1 4293 6148 -6 712 227 4 134 chr11 14245718 14245732 -134537740 + MIR SINE MIR 238 252 -10 2416 102 13 5 chr11 14245748 14246120 -134537352 - THE1C-int LTR MaLR -1205 375 1 2445 115 30 3 chr11 14246120 14246485 -134536987 - THE1C LTR MaLR 0 375 1 3502 184 70 0 chr11 14246485 14247166 -134536306 - MST-int LTR MaLR -690 961 233 29787 82 9 6 chr11 14247166 14249621 -134533851 - L1P LINE L1 -1852 4294 1816 2050 107 0 4 chr11 14249621 14249922 -134533550 + AluY SINE Alu 1 300 0 29787 82 9 6 chr11 14249922 14251745 -134531727 - L1P LINE L1 -4330 1816 1 1962 129 114 9 chr11 14251747 14252088 -134531384 + THE1-int LTR MaLR 361 737 -843 480 273 36 0 chr11 14252370 14252509 -134530963 + MER117 DNA MER1_type 1 144 -53 3198 179 42 14 chr11 14252817 14253452 -134530020 + MER82 DNA MER2_type 1 653 0 1631 245 90 51 chr11 14254542 14255382 -134528090 + L2 LINE L2 2456 3309 -4 1283 234 46 7 chr11 14255451 14255905 -134527567 + L1M4 LINE L1 2997 3468 -2678 1848 154 26 22 chr11 14255905 14256216 -134527256 + AluJb SINE Alu 1 312 0 3856 168 47 10 chr11 14256243 14257012 -134526460 + L1MD1 LINE L1 5445 6241 -1 342 241 105 23 chr11 14257219 14257352 -134526120 + L1ME4a LINE L1 5977 6120 -1 286 270 190 15 chr11 14257365 14257502 -134525970 - L3 LINE CR1 -37 1540 1380 324 334 48 57 chr11 14257908 14258112 -134525360 + L1M4 LINE L1 4456 4657 -1489 1358 107 226 8 chr11 14258112 14258355 -134525117 + AluJb SINE Alu 1 296 -16 324 334 48 57 chr11 14258355 14258464 -134525008 + L1M4 LINE L1 4657 4766 -1380 666 231 48 11 chr11 14258892 14259078 -134524394 + LTR33A LTR ERVL 331 523 0 704 22 33 0 chr11 14259103 14259195 -134524277 + (TTTAG)n Simple_repeat Simple_repeat 1 95 0 359 298 70 48 chr11 14259889 14260117 -134523355 - L1ME4a LINE L1 -4 6117 5885 476 357 13 37 chr11 14260131 14260431 -134523041 + HERVL LTR ERVL 4572 4864 -790 1050 264 107 22 chr11 14260788 14261189 -134522283 + LTR16A LTR ERVL 16 450 0 237 209 0 0 chr11 14261802 14261845 -134521627 + CT-rich Low_complexity Low_complexity 2 44 0 1511 193 10 26 chr11 14262537 14262848 -134520624 - AluJo SINE Alu -1 311 6 635 311 108 10 chr11 14263044 14263349 -134520123 + HAL1 LINE L1 256 590 -1917 317 216 278 12 chr11 14263365 14263442 -134520030 + HAL1 LINE L1 1045 1100 -1407 2417 72 0 34 chr11 14263442 14263762 -134519710 + AluSc SINE Alu 1 309 0 317 216 278 12 chr11 14263762 14263846 -134519626 + HAL1 LINE L1 1100 1249 -1258 1424 186 29 25 chr11 14263849 14264124 -134519348 + AluJo SINE Alu 1 276 -36 655 224 29 0 chr11 14264146 14264316 -134519156 + L1M4 LINE L1 4865 5039 -1107 2285 224 138 51 chr11 14264411 14265508 -134517964 + HAL1 LINE L1 1303 2494 -13 562 185 141 0 chr11 14266093 14266228 -134517244 + MIR SINE MIR 96 249 -13 5116 190 53 21 chr11 14266272 14267827 -134515645 + L1MD2 LINE L1 4747 6347 -12 1913 158 7 10 chr11 14267859 14268163 -134515309 + AluJo SINE Alu 1 303 -9 23 0 0 0 chr11 14269074 14269097 -134514375 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr11 14270197 14270226 -134513246 + AT_rich Low_complexity Low_complexity 1 29 0 2493 74 0 0 chr11 14271265 14271564 -134511908 - AluY SINE Alu -12 299 1 654 248 0 14 chr11 14272331 14272476 -134510996 + MER63A DNA MER1_type 45 187 -23 359 281 8 31 chr11 14272477 14272605 -134510867 + (CATATA)n Simple_repeat Simple_repeat 3 127 0 350 281 34 0 chr11 14272624 14272713 -134510759 + MIR SINE MIR 26 117 -145 207 275 147 0 chr11 14272794 14272903 -134510569 + MIR SINE MIR 138 262 0 212 0 36 0 chr11 14272938 14272966 -134510506 + (TG)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr11 14273874 14273895 -134509577 + AT_rich Low_complexity Low_complexity 1 21 0 2071 129 0 0 chr11 14274248 14274527 -134508945 + AluSg SINE Alu 1 279 -31 222 219 0 0 chr11 14274819 14274860 -134508612 + GA-rich Low_complexity Low_complexity 3 43 0 216 269 19 0 chr11 14274873 14274925 -134508547 + MIR SINE MIR 31 83 -125 1237 134 21 198 chr11 14274966 14275330 -134508142 + Charlie4a DNA MER1_type 17 275 -1686 2414 91 26 3 chr11 14275330 14275672 -134507800 + L1PA10 LINE L1 5814 6163 -5 1237 134 21 198 chr11 14275672 14275793 -134507679 + Charlie4a DNA MER1_type 275 416 -92 499 206 131 6 chr11 14275797 14275957 -134507515 - L1MB7 LINE L1 -10 6174 5995 2928 157 21 28 chr11 14275970 14276650 -134506822 - L1MB7 LINE L1 -351 5833 5160 1846 139 35 14 chr11 14276650 14276938 -134506534 + AluJb SINE Alu 1 294 -18 2928 157 21 28 chr11 14276938 14277021 -134506451 - L1MB7 LINE L1 -1024 5160 5078 453 132 28 66 chr11 14277022 14277099 -134506373 + L1MB8 LINE L1 6071 6144 -34 1062 181 34 10 chr11 14277099 14277304 -134506168 - MER6B DNA MER2_type 0 210 1 453 132 28 66 chr11 14277304 14277332 -134506140 + L1MB8 LINE L1 6144 6172 -6 622 153 15 23 chr11 14277465 14277596 -134505876 + L1MB7 LINE L1 6054 6183 -1 696 218 0 0 chr11 14277643 14277767 -134505705 - FLAM_A SINE Alu -9 124 1 438 211 0 70 chr11 14277817 14277853 -134505619 + Charlie4a DNA MER1_type 403 440 -1521 1771 131 91 0 chr11 14277853 14278128 -134505344 + AluSx SINE Alu 1 300 -12 438 211 0 70 chr11 14278128 14278205 -134505267 + Charlie4a DNA MER1_type 440 508 0 269 275 50 12 chr11 14278227 14278307 -134505165 + MIR3 SINE MIR 104 186 -22 1659 47 0 19 chr11 14279878 14280091 -134503381 - L1PA5 LINE L1 0 6154 5946 2523 55 0 13 chr11 14281109 14281420 -134502052 - AluY SINE Alu -4 307 1 23 0 0 0 chr11 14281653 14281676 -134501796 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr11 14282882 14282905 -134500567 + AT_rich Low_complexity Low_complexity 1 23 0 2178 131 0 0 chr11 14282975 14283272 -134500200 + AluSx SINE Alu 1 297 -15 35 24 0 0 chr11 14283328 14283370 -134500102 + AT_rich Low_complexity Low_complexity 1 42 0 388 307 218 14 chr11 14283740 14284033 -134499439 + L2 LINE L2 2274 2626 -688 21 36 0 0 chr11 14284186 14284214 -134499258 + AT_rich Low_complexity Low_complexity 1 28 0 277 266 0 51 chr11 14284259 14284338 -134499134 + L2 LINE L2 3239 3313 0 2291 79 3 30 chr11 14284475 14284778 -134498694 + AluSx SINE Alu 1 295 -17 201 269 19 0 chr11 14286174 14286226 -134497246 - L2 LINE L2 -213 3059 3007 1625 177 7 45 chr11 14286426 14286736 -134496736 - AluJo SINE Alu -14 298 1 1845 125 63 21 chr11 14286834 14287121 -134496351 + AluJo SINE Alu 1 299 -13 407 218 0 0 chr11 14287417 14287495 -134495977 - MER116 DNA Mariner -2 78 1 373 274 134 26 chr11 14287621 14287829 -134495643 + MIR SINE MIR 3 232 -30 305 282 77 0 chr11 14288411 14288528 -134494944 - L2 LINE L2 -20 3293 3168 1988 150 7 0 chr11 14288991 14289285 -134494187 - AluSx SINE Alu -15 297 2 1666 106 160 4 chr11 14289538 14289794 -134493678 - AluSx SINE Alu -16 296 1 218 200 20 0 chr11 14289808 14289858 -134493614 - MIR SINE MIR -139 123 73 231 199 0 15 chr11 14290172 14290236 -134493236 + MIR SINE MIR 89 148 -65 386 268 146 18 chr11 14291247 14291411 -134492061 - MIR SINE MIR -57 205 21 2352 82 0 7 chr11 14291591 14291884 -134491588 - AluSx SINE Alu -19 293 3 303 326 133 39 chr11 14292127 14292587 -134490885 + L2 LINE L2 531 1033 -2281 207 0 0 0 chr11 14292724 14292747 -134490725 + (T)n Simple_repeat Simple_repeat 1 23 0 2241 94 13 3 chr11 14293258 14293556 -134489916 + AluSq SINE Alu 1 301 -12 665 312 18 113 chr11 14293793 14293946 -134489526 - L2 LINE L2 -4 3268 3102 2654 125 18 66 chr11 14293946 14294178 -134489294 - Tigger2a DNA MER2_type -2274 434 233 2233 129 0 6 chr11 14294178 14294489 -134488983 + AluSx SINE Alu 1 309 -3 2654 125 18 66 chr11 14294489 14294711 -134488761 - Tigger2a DNA MER2_type -2475 233 2 665 312 18 113 chr11 14294711 14294948 -134488524 - L2 LINE L2 -170 3102 2915 236 282 114 30 chr11 14295048 14295179 -134488293 - L2 LINE L2 -562 2752 2611 2426 98 0 0 chr11 14295566 14295871 -134487601 + AluSx SINE Alu 1 305 -7 258 214 0 136 chr11 14296141 14296244 -134487228 + HAL1 LINE L1 1353 1441 -1066 1628 149 50 8 chr11 14296275 14296574 -134486898 + AluJo SINE Alu 19 328 0 791 226 65 0 chr11 14296574 14296773 -134486699 + HAL1 LINE L1 1430 1641 -866 236 339 39 44 chr11 14296794 14296809 -134486663 + HAL1 LINE L1 1756 1770 -737 198 0 0 0 chr11 14296809 14296831 -134486641 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 236 339 39 44 chr11 14296831 14296995 -134486477 + HAL1 LINE L1 1770 1934 -573 * 274 284 37 18 chr11 14296987 14297096 -134486376 + HAL1 LINE L1 1690 1800 -707 2594 127 3 0 chr11 14347942 14348305 -134435167 - THE1B LTR MaLR 0 364 1 628 78 0 0 chr11 14348305 14348395 -134435077 - THE1B-int LTR MaLR 0 1580 1491 356 30 15 164 chr11 14348496 14348563 -134434909 + LTR12 LTR ERV1 357 714 0 742 193 27 13 chr11 14348566 14348716 -134434756 + HERV9 LTR ERV1 2 153 -8246 * 10068 92 4 5 chr11 14348715 14350069 -134433403 + HERV9 LTR ERV1 1283 2635 -5764 390 69 0 0 chr11 14350674 14350732 -134432740 + (TA)n Simple_repeat Simple_repeat 2 59 0 1993 145 0 10 chr11 14350746 14351042 -134432430 - AluSx SINE Alu -19 293 1 2248 129 0 0 chr11 14351052 14351354 -134432118 - AluSg SINE Alu -8 302 1 1881 160 3 22 chr11 14351541 14351859 -134431613 - AluJb SINE Alu 0 312 1 377 125 14 28 chr11 14351863 14351935 -134431537 + HsTC2 DNA Tc2 1823 1893 -5 712 185 8 0 chr11 14352303 14352422 -134431050 + FLAM_A SINE Alu 2 121 -12 811 159 130 0 chr11 14352445 14352633 -134430839 + L1MC4a LINE L1 5218 5426 -744 2247 116 0 0 chr11 14352760 14353053 -134430419 + AluSg SINE Alu 1 293 -17 2436 97 0 0 chr11 14353060 14353370 -134430102 + AluSx SINE Alu 1 310 -2 1415 314 63 21 chr11 14353389 14354183 -134429289 + L1MEc LINE L1 136 962 -5434 496 191 52 43 chr11 14354184 14354299 -134429173 - MER105 DNA DNA 0 204 89 314 230 7 53 chr11 14354403 14354555 -134428917 + L1MEc LINE L1 966 1110 -5286 259 188 0 21 chr11 14354565 14354613 -134428859 + Alu SINE Alu 1 47 -256 1112 195 15 10 chr11 14354727 14354780 -134428692 + AluJb SINE Alu 85 136 -176 2091 112 14 7 chr11 14354780 14355075 -134428397 + AluSx SINE Alu 3 299 -13 1112 195 15 10 chr11 14355075 14355226 -134428246 + AluJb SINE Alu 136 290 -22 272 236 0 0 chr11 14356008 14356063 -134427409 + MLT1K LTR MaLR 532 586 -2 217 186 118 60 chr11 14356536 14356721 -134426751 + MER5C DNA MER1_type 67 320 -4 229 302 93 54 chr11 14357139 14357417 -134426055 + L2 LINE L2 2015 2303 -1011 916 98 28 28 chr11 14357951 14358094 -134425378 - AluSg/x SINE Alu -25 285 143 334 219 167 0 chr11 14358094 14358208 -134425264 - MIR SINE MIR -122 140 8 21 0 0 0 chr11 14358293 14358314 -134425158 + AT_rich Low_complexity Low_complexity 1 21 0 498 256 84 73 chr11 14358412 14358685 -134424787 + L1MC4a LINE L1 5600 5875 -1933 335 279 50 50 chr11 14358897 14359058 -134424414 + MIR3 SINE MIR 38 198 -10 508 276 114 5 chr11 14359377 14359587 -134423885 + MIR SINE MIR 17 249 -13 2147 276 121 11 chr11 14359895 14361121 -134422351 - L2 LINE L2 -3 3310 1947 635 158 117 0 chr11 14361220 14361340 -134422132 + MER94 DNA DNA 1 134 0 870 184 40 17 chr11 14361619 14361793 -134421679 + AluJo SINE Alu 1 178 -134 434 264 87 14 chr11 14362133 14362341 -134421131 + L2 LINE L2 2087 2309 -1005 782 253 67 22 chr11 14362343 14362655 -134420817 + L2 LINE L2 2452 2777 -537 201 167 0 0 chr11 14362706 14362742 -134420730 + (TTAA)n Simple_repeat Simple_repeat 2 37 0 2246 120 13 0 chr11 14362903 14363212 -134420260 - AluSq SINE Alu 0 313 1 1792 243 122 23 chr11 14364404 14364550 -134418922 - L2 LINE L2 -2 3311 3181 1740 179 6 13 chr11 14364550 14364863 -134418609 + AluJo SINE Alu 1 311 -1 1792 243 122 23 chr11 14364863 14365785 -134417687 - L2 LINE L2 -132 3181 2156 2736 175 56 67 chr11 14365930 14366700 -134416772 - L1MB8 LINE L1 -290 5888 5111 2067 144 0 3 chr11 14366700 14366998 -134416474 - AluSx SINE Alu -15 297 1 2736 175 56 67 chr11 14366998 14367055 -134416417 - L1MB8 LINE L1 -1067 5111 5055 2208 125 3 0 chr11 14367055 14367366 -134416106 - AluSx SINE Alu 0 312 1 2736 175 56 67 chr11 14367366 14367461 -134416011 - L1MB8 LINE L1 -1123 5055 4985 2195 118 0 0 chr11 14367771 14368059 -134415413 + AluSx SINE Alu 1 288 -24 1211 219 75 14 chr11 14368630 14368752 -134414720 + AluJo SINE Alu 1 114 -198 429 20 0 0 chr11 14368752 14368802 -134414670 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 1211 219 75 14 chr11 14368802 14368958 -134414514 + AluJo SINE Alu 114 296 -16 2290 99 0 0 chr11 14368961 14369266 -134414206 + AluSg SINE Alu 1 305 0 198 0 0 0 chr11 14369579 14369601 -134413871 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 2096 150 0 0 chr11 14369680 14369980 -134413492 + AluJb SINE Alu 2 301 -11 26 0 0 0 chr11 14370000 14370026 -134413446 + AT_rich Low_complexity Low_complexity 1 26 0 1082 132 6 12 chr11 14370162 14370329 -134413143 + AluY SINE Alu 1 166 -145 251 188 0 16 chr11 14371165 14371229 -134412243 + (TTCA)n Simple_repeat Simple_repeat 1 63 0 531 327 41 5 chr11 14371321 14371541 -134411931 - MIR SINE MIR -15 247 20 188 251 149 59 chr11 14371803 14372058 -134411414 + L2 LINE L2 382 659 -2655 378 291 14 28 chr11 14372509 14372650 -134410822 - MER5A DNA MER1_type -34 155 17 1045 230 14 10 chr11 14372803 14373012 -134410460 + MER63A DNA MER1_type 1 210 0 2197 126 3 0 chr11 14373168 14373462 -134410010 + AluSx SINE Alu 1 295 -17 21 57 0 0 chr11 14373552 14373587 -134409885 + AT_rich Low_complexity Low_complexity 1 35 0 347 259 43 65 chr11 14374170 14374309 -134409163 - L2 LINE L2 0 3272 3137 1992 123 3 23 chr11 14374610 14374965 -134408507 + AluSq SINE Alu 1 313 0 1850 164 3 10 chr11 14374966 14375271 -134408201 + AluJo SINE Alu 1 303 -9 1964 131 13 29 chr11 14375274 14375580 -134407892 + AluSx SINE Alu 1 301 -11 207 202 36 24 chr11 14375594 14375678 -134407794 + GA-rich Low_complexity Low_complexity 5 89 0 589 249 83 76 chr11 14377064 14377341 -134406131 + MLT1L LTR MaLR 46 324 -291 652 233 109 101 chr11 14377368 14377554 -134405918 + MLT1L LTR MaLR 252 435 -180 1825 74 0 0 chr11 14377554 14377784 -134405688 - L1PA8 LINE L1 -4 6168 5939 652 233 109 101 chr11 14377784 14377797 -134405675 + MLT1L LTR MaLR 435 446 -169 2456 89 3 0 chr11 14377797 14378101 -134405371 - AluSp SINE Alu -8 305 1 652 233 109 101 chr11 14378101 14378248 -134405224 + MLT1L LTR MaLR 446 602 -13 180 0 0 0 chr11 14378260 14378280 -134405192 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1755 146 52 4 chr11 14378284 14378552 -134404920 - AluJb SINE Alu -31 281 1 180 233 75 83 chr11 14378577 14378697 -134404775 - L2 LINE L2 -97 3216 3098 643 241 0 0 chr11 14378876 14379009 -134404463 + FLAM_C SINE Alu 1 133 0 492 276 13 39 chr11 14379875 14380031 -134403441 + LTR16C LTR ERVL 340 491 0 308 309 12 0 chr11 14380057 14380141 -134403331 + HAL1 LINE L1 237 321 -2186 2491 208 76 6 chr11 14380271 14380899 -134402573 - L1MC4 LINE L1 -6 8036 7282 290 226 9 49 chr11 14380906 14381014 -134402458 - L1MC4a LINE L1 -562 7291 7147 254 161 36 0 chr11 14380989 14381045 -134402427 - L1MC4 LINE L1 -954 7088 7031 * 312 140 0 18 chr11 14381045 14381102 -134402370 - MLT2B1 LTR ERVL -1 519 464 24 67 0 0 chr11 14381109 14381154 -134402318 + AT_rich Low_complexity Low_complexity 1 45 0 1050 171 0 0 chr11 14381208 14381378 -134402094 - AluJb SINE Alu -9 303 134 2117 132 3 0 chr11 14381378 14381674 -134401798 - AluSx SINE Alu -15 297 1 2288 104 0 10 chr11 14381682 14381989 -134401483 - AluSq SINE Alu -9 304 1 1572 181 84 36 chr11 14381996 14382380 -134401092 - MLT2B1 LTR ERVL -55 359 1 1466 173 0 12 chr11 14382380 14382623 -134400849 - L1MC4 LINE L1 -1008 7034 6795 932 148 0 39 chr11 14382629 14382821 -134400651 - AluSc SINE Alu 0 316 131 411 73 0 0 chr11 14382821 14382876 -134400596 + (TG)n Simple_repeat Simple_repeat 2 56 0 671 116 5 63 chr11 14382876 14383066 -134400406 + (TA)n Simple_repeat Simple_repeat 1 179 0 21 0 0 0 chr11 14383083 14383104 -134400368 + AT_rich Low_complexity Low_complexity 1 21 0 766 107 0 0 chr11 14383104 14383207 -134400265 - AluJb SINE Alu -187 125 23 513 288 6 8 chr11 14383215 14383392 -134400080 - L1MC4a LINE L1 -1040 6745 6570 342 62 0 21 chr11 14383403 14383451 -134400021 - MER50 LTR ERV1 -189 545 499 394 243 111 7 chr11 14383451 14383595 -134399877 - L1MC4 LINE L1 -1379 6663 6505 2531 79 0 0 chr11 14383669 14383972 -134399500 - AluY SINE Alu -8 303 1 26 0 0 0 chr11 14384108 14384134 -134399338 + AT_rich Low_complexity Low_complexity 1 26 0 2130 147 0 0 chr11 14384154 14384454 -134399018 - AluJb SINE Alu -11 301 2 305 282 201 7 chr11 14385240 14385389 -134398083 + MIR SINE MIR 34 211 -51 229 288 125 61 chr11 14385449 14385713 -134397759 - L2 LINE L2 -423 2891 2611 378 179 98 18 chr11 14385983 14386095 -134397377 + L1ME4a LINE L1 5998 6118 -3 22 35 0 0 chr11 14386095 14386124 -134397348 + AT_rich Low_complexity Low_complexity 1 29 0 417 252 62 20 chr11 14386822 14386970 -134396502 - MIR SINE MIR -65 143 38 1638 195 149 16 chr11 14387021 14387390 -134396082 - MER47B DNA MER2_type 0 418 1 1708 199 151 23 chr11 14387453 14387891 -134395581 - MLT1D LTR MaLR -9 496 3 670 213 8 0 chr11 14387897 14388057 -134395415 - FLAM_A SINE Alu 0 161 1 727 218 72 21 chr11 14388370 14388563 -134394909 - MIR SINE MIR -12 250 48 1169 269 76 8 chr11 14389097 14389494 -134393978 - LTR16A LTR ERVL -8 442 19 234 185 19 176 chr11 14389934 14390042 -134393430 - L2 LINE L2 -3 3310 3220 239 273 102 11 chr11 14390361 14390449 -134393023 + L2 LINE L2 3160 3255 -17 255 321 21 71 chr11 14390450 14390590 -134392882 - MIR SINE MIR -67 141 9 471 82 0 0 chr11 14390665 14390738 -134392734 + (TG)n Simple_repeat Simple_repeat 2 74 0 254 194 15 0 chr11 14391477 14391544 -134391928 + CT-rich Low_complexity Low_complexity 1 68 0 1831 137 0 78 chr11 14391554 14391861 -134391611 - AluJo SINE Alu -29 283 1 2362 106 0 0 chr11 14391870 14392181 -134391291 - AluY SINE Alu 0 311 1 330 270 111 75 chr11 14392192 14392499 -134390973 - L1MC4a LINE L1 -1643 6165 5848 216 86 0 0 chr11 14392721 14392756 -134390716 + (TG)n Simple_repeat Simple_repeat 1 35 0 631 253 71 50 chr11 14392883 14393164 -134390308 + L2 LINE L2 3027 3313 0 438 302 112 16 chr11 14393341 14393599 -134389873 + L2 LINE L2 1575 1857 -1457 789 245 343 17 chr11 14393728 14394250 -134389222 + L2 LINE L2 2086 2777 -537 201 167 0 0 chr11 14394301 14394337 -134389135 + (TTAA)n Simple_repeat Simple_repeat 4 39 0 2094 137 13 0 chr11 14394501 14394807 -134388665 - AluSq SINE Alu -3 310 1 1907 116 4 14 chr11 14394965 14395241 -134388231 - AluSq SINE Alu -40 273 1 204 328 39 70 chr11 14395397 14395489 -134387983 - L2 LINE L2 -4 3309 3221 1791 172 7 3 chr11 14395489 14395797 -134387675 - AluJo SINE Alu -3 309 1 204 328 39 70 chr11 14395797 14395832 -134387640 - L2 LINE L2 -92 3221 3186 1447 239 74 29 chr11 14396528 14396975 -134386497 + MLT1C LTR MaLR 1 467 0 2218 94 23 0 chr11 14397760 14398059 -134385413 - AluSx SINE Alu -6 306 1 3567 157 42 18 chr11 14398195 14398820 -134384652 + L1MC3 LINE L1 7130 7769 -16 1651 191 3 10 chr11 14399534 14399822 -134383650 + AluJo SINE Alu 1 286 -26 197 242 95 63 chr11 14399932 14400027 -134383445 - L2 LINE L2 -56 3257 3160 278 227 11 57 chr11 14400045 14400133 -134383339 - HsTC2 DNA Tc2 -1812 86 3 2419 91 0 0 chr11 14400374 14400671 -134382801 + AluSq SINE Alu 1 297 -16 806 247 0 0 chr11 14400861 14401023 -134382449 + FRAM SINE Alu 1 162 -4 1939 139 0 14 chr11 14401293 14401608 -134381864 + AluSx SINE Alu 1 311 0 725 224 139 15 chr11 14401989 14402190 -134381282 - MIR SINE MIR -23 239 14 2882 16 0 0 chr11 14402422 14402734 -134380738 - AluYb8 SINE Alu -6 312 1 2289 88 7 0 chr11 14403975 14404269 -134379203 + AluSx SINE Alu 1 296 -16 1794 153 3 41 chr11 14405227 14405541 -134377931 + AluJb SINE Alu 2 303 -9 918 236 70 87 chr11 14406137 14406242 -134377230 + L1ME1 LINE L1 3342 3447 -2699 1709 178 0 36 chr11 14406242 14406545 -134376927 + AluJb SINE Alu 1 292 -20 918 236 70 87 chr11 14406545 14407063 -134376409 + L1ME1 LINE L1 3447 3955 -2191 350 266 151 85 chr11 14407064 14407666 -134375806 + L1ME1 LINE L1 4012 4653 -1493 390 215 93 19 chr11 14407696 14407803 -134375669 + L2 LINE L2 3195 3309 -4 244 253 70 48 chr11 14407851 14408037 -134375435 + L1ME1 LINE L1 4767 4956 -1190 249 306 97 37 chr11 14408233 14408367 -134375105 + MIR SINE MIR 40 181 -81 2305 52 42 0 chr11 14408388 14408676 -134374796 - AluY SINE Alu -11 300 1 22 0 0 0 chr11 14409462 14409484 -134373988 + AT_rich Low_complexity Low_complexity 1 22 0 2790 13 0 3 chr11 14409856 14410163 -134373309 + AluYa5 SINE Alu 1 306 -5 428 209 19 0 chr11 14411290 14411395 -134372077 + (CATATA)n Simple_repeat Simple_repeat 2 108 0 2093 119 3 14 chr11 14411397 14411691 -134371781 - AluSq SINE Alu -22 291 1 528 222 93 20 chr11 14411710 14411890 -134371582 + MER69 DNA AcHobo 1 2526 0 27 0 0 0 chr11 14411994 14412021 -134371451 + AT_rich Low_complexity Low_complexity 1 27 0 1594 202 0 28 chr11 14412065 14412382 -134371090 + AluJo SINE Alu 1 308 -4 1258 136 17 15 chr11 14412567 14412802 -134370670 + AluJb SINE Alu 1 297 -15 832 219 30 0 chr11 14413189 14413358 -134370114 - FRAM SINE Alu -2 174 1 842 153 15 8 chr11 14413836 14413967 -134369505 + FLAM_A SINE Alu 2 133 0 2144 214 75 11 chr11 14414028 14414630 -134368842 + L1ME1 LINE L1 5192 5830 -334 1082 123 0 7 chr11 14414630 14414784 -134368688 + AluJb SINE Alu 135 287 -25 541 199 15 23 chr11 14414791 14415050 -134368422 + L1ME1 LINE L1 5808 6103 -63 351 308 176 33 chr11 14415371 14415673 -134367799 - L1ME4a LINE L1 -237 5884 5540 368 250 50 0 chr11 14415701 14415821 -134367651 - L1ME4a LINE L1 0 6121 5996 1494 146 73 11 chr11 14415932 14416207 -134367265 - AluJb SINE Alu -20 292 1 239 294 81 38 chr11 14416441 14416601 -134366871 - L1ME4a LINE L1 -570 5551 5385 282 56 0 0 chr11 14416802 14416838 -134366634 + (CA)n Simple_repeat Simple_repeat 1 36 0 240 293 196 36 chr11 14417024 14417713 -134365759 + L2 LINE L2 1562 2360 -954 5515 205 149 17 chr11 14417880 14419369 -134364103 + L1MDa LINE L1 19 1983 -4557 3463 146 91 54 chr11 14419369 14420049 -134363423 + MER44D DNA MER2_type 1 705 0 5515 205 149 17 chr11 14420049 14420492 -134362980 + L1MDa LINE L1 1983 2366 -4174 498 209 98 52 chr11 14420493 14420585 -134362887 - MIR SINE MIR -89 173 70 1883 159 31 25 chr11 14420585 14420944 -134362528 - MER46B DNA MER2_type 0 236 1 498 209 98 52 chr11 14420944 14421004 -134362468 - MIR SINE MIR -192 70 14 1980 191 79 23 chr11 14421182 14421437 -134362035 + LTR54 LTR ERV1 1 240 -270 852 129 15 23 chr11 14421437 14421569 -134361903 + FLAM_C SINE Alu 3 133 0 1980 191 79 23 chr11 14421569 14421796 -134361676 + LTR54 LTR ERV1 240 510 0 444 233 159 41 chr11 14421796 14422109 -134361363 + Charlie4a DNA MER1_type 90 439 -69 700 139 0 0 chr11 14422109 14422210 -134361262 + AluJ/FLAM SINE Alu 2 102 -210 1202 197 34 11 chr11 14422318 14422723 -134360749 - L1M3 LINE L1 -641 5539 5126 1686 168 42 3 chr11 14422735 14423021 -134360451 - AluJo SINE Alu -15 297 1 2333 90 0 0 chr11 14423437 14423736 -134359736 + AluSx SINE Alu 1 299 -13 188 254 17 51 chr11 14423919 14423978 -134359494 + MER5A DNA MER1_type 47 103 -86 700 211 133 6 chr11 14424632 14424798 -134358674 - MER5A DNA MER1_type -1 188 2 758 269 91 123 chr11 14424854 14424904 -134358568 - MLT1K LTR MaLR -6 582 532 1678 144 0 0 chr11 14424904 14425140 -134358332 + MER46A DNA MER2_type 1 236 0 758 269 91 123 chr11 14425140 14425337 -134358135 - MLT1K LTR MaLR -56 532 330 875 183 146 0 chr11 14425337 14425501 -134357971 - MER5A DNA MER1_type 0 189 2 758 269 91 123 chr11 14425501 14425844 -134357628 - MLT1K LTR MaLR -258 330 10 239 323 44 57 chr11 14425985 14426143 -134357329 + MIR SINE MIR 57 212 -50 2105 137 0 0 chr11 14426175 14426468 -134357004 - AluSx SINE Alu -19 293 1 226 290 86 11 chr11 14426548 14426641 -134356831 + L1MC4a LINE L1 5440 5539 -2269 702 243 143 68 chr11 14426705 14427075 -134356397 + LTR16C LTR ERVL 94 491 0 1217 250 62 19 chr11 14427094 14427462 -134356010 + L1MC4a LINE L1 5579 5962 -1846 1349 90 37 0 chr11 14427509 14427697 -134355775 - AluSq SINE Alu -5 308 114 2500 81 0 0 chr11 14427770 14428078 -134355394 - AluY SINE Alu -3 308 1 341 198 167 10 chr11 14428491 14428587 -134354885 - MIR SINE MIR -65 143 33 333 191 0 0 chr11 14428936 14428999 -134354473 + L2 LINE L2 3210 3272 0 384 268 309 6 chr11 14429333 14429501 -134353971 + MIR SINE MIR 32 250 -12 283 205 0 72 chr11 14430087 14430170 -134353302 + (TCTCTG)n Simple_repeat Simple_repeat 4 80 0 234 196 22 0 chr11 14430528 14430574 -134352898 + Alu SINE Alu 147 193 -110 535 108 0 137 chr11 14430580 14430663 -134352809 + FLAM_A SINE Alu 40 108 -203 2495 80 0 0 chr11 14430663 14430963 -134352509 - AluSq SINE Alu -13 300 1 535 108 0 137 chr11 14430963 14430981 -134352491 + FLAM_A SINE Alu 108 127 -184 27 0 0 0 chr11 14431039 14431066 -134352406 + AT_rich Low_complexity Low_complexity 1 27 0 396 224 224 46 chr11 14431131 14431368 -134352104 + L1MC/D LINE L1 5378 5656 -465 279 253 59 106 chr11 14432123 14432396 -134351076 + MLT1J1 LTR MaLR 9 307 -204 227 247 71 0 chr11 14432432 14432517 -134350955 + MLT1L LTR MaLR 503 593 -22 246 192 0 0 chr11 14432571 14432623 -134350849 + (TA)n Simple_repeat Simple_repeat 2 53 0 195 42 0 0 chr11 14432623 14432647 -134350825 + (GA)n Simple_repeat Simple_repeat 2 25 0 349 257 12 15 chr11 14432648 14432767 -134350705 + L1MC/D LINE L1 5696 5813 -308 1851 150 25 0 chr11 14433194 14433480 -134349992 + AluJo SINE Alu 1 293 -19 883 149 0 22 chr11 14433497 14433631 -134349841 + AluJo SINE Alu 6 136 -176 2276 95 0 0 chr11 14433631 14433916 -134349556 + AluSx SINE Alu 1 313 0 192 36 36 0 chr11 14433916 14433944 -134349528 + (TAAAA)n Simple_repeat Simple_repeat 2 175 0 359 134 0 85 chr11 14433947 14434029 -134349443 + AluJ/FRAM SINE Alu 228 302 0 811 285 31 76 chr11 14434567 14434804 -134348668 + L1ME4a LINE L1 5593 5796 -325 2188 119 0 0 chr11 14434804 14435106 -134348366 + AluSx SINE Alu 1 302 -10 811 285 31 76 chr11 14435106 14435381 -134348091 + L1ME4a LINE L1 5796 6082 -39 24 0 0 0 chr11 14435445 14435469 -134348003 + AT_rich Low_complexity Low_complexity 1 24 0 302 299 167 14 chr11 14436215 14436359 -134347113 + MIR SINE MIR 35 200 -62 373 253 73 7 chr11 14436786 14436936 -134346536 + MER113 DNA MER1_type? 6 165 -356 2052 117 78 33 chr11 14437042 14437401 -134346071 - THE1C LTR MaLR 0 375 1 290 274 108 32 chr11 14437498 14437655 -134345817 - MIR3 SINE MIR -10 198 30 232 250 19 0 chr11 14438203 14438255 -134345217 + MER91 DNA MER1_type 135 187 -3 412 207 135 9 chr11 14438580 14438691 -134344781 + MIR3 SINE MIR 11 135 -73 2243 112 0 0 chr11 14438735 14439031 -134344441 + AluSx SINE Alu 1 296 -16 208 228 88 0 chr11 14439173 14439230 -134344242 - MIR SINE MIR -108 100 39 629 296 109 39 chr11 14439430 14439649 -134343823 - L2 LINE L2 -627 2687 2436 2628 141 23 28 chr11 14439649 14440076 -134343396 + MER61B LTR ERV1 1 425 0 629 296 109 39 chr11 14440076 14440187 -134343285 - L2 LINE L2 -878 2436 2334 406 326 39 33 chr11 14440364 14440545 -134342927 + MIR SINE MIR 5 186 -76 2371 132 19 16 chr11 14440643 14441007 -134342465 + MLT1A1 LTR MaLR 1 365 0 533 271 169 4 chr11 14441072 14441297 -134342175 + MIR SINE MIR 1 262 0 198 311 0 0 chr11 14441306 14441351 -134342121 + L2 LINE L2 3217 3261 -11 899 293 87 14 chr11 14442071 14442440 -134341032 - MLT1L LTR MaLR 0 615 220 200 290 58 14 chr11 14442488 14442557 -134340915 - L2 LINE L2 -534 2780 2709 741 192 15 8 chr11 14442569 14442699 -134340773 - FLAM_C SINE Alu -12 131 1 662 305 283 19 chr11 14442701 14443543 -134339929 - L2 LINE L2 -601 2713 1650 2192 114 3 0 chr11 14444014 14444304 -134339168 - AluSx SINE Alu -19 293 3 280 320 0 0 chr11 14446376 14446451 -134337021 + L3 LINE CR1 1501 1575 -2 295 293 95 17 chr11 14446529 14446645 -134336827 + MIR SINE MIR 64 188 -74 852 161 13 13 chr11 14446870 14447025 -134336447 - L1MB3 LINE L1 -13 6170 6016 2334 94 7 3 chr11 14447187 14447494 -134335978 + AluSg SINE Alu 3 310 0 733 274 25 59 chr11 14447825 14448062 -134335410 + MIR SINE MIR 1 228 -34 23 0 0 0 chr11 14448169 14448192 -134335280 + AT_rich Low_complexity Low_complexity 1 23 0 393 275 76 55 chr11 14448765 14449001 -134334471 - L2 LINE L2 -203 3069 2829 5122 241 78 61 chr11 14449489 14450591 -134332881 - L1MDa LINE L1 -1809 4406 3324 838 158 0 34 chr11 14450591 14450737 -134332735 - FLAM_C SINE Alu -2 141 1 5122 241 78 61 chr11 14450737 14452006 -134331466 - L1MDa LINE L1 -2891 3324 2078 829 199 0 0 chr11 14452006 14452137 -134331335 + FLAM_A SINE Alu 1 131 -2 5122 241 78 61 chr11 14452137 14453332 -134330140 - L1MDa LINE L1 -4137 2078 469 2321 115 0 0 chr11 14454328 14454640 -134328832 + AluSx SINE Alu 1 312 0 1659 193 7 10 chr11 14454712 14455017 -134328455 - AluJb SINE Alu -8 304 1 224 232 116 71 chr11 14455671 14455783 -134327689 - L2 LINE L2 0 3313 3197 234 260 233 0 chr11 14456383 14456456 -134327016 + L2 LINE L2 3223 3312 -1 2071 106 7 23 chr11 14456907 14457209 -134326263 + AluSg SINE Alu 1 297 -13 1693 261 217 20 chr11 14457308 14458100 -134325372 - L2 LINE L2 -1177 2137 1190 2322 115 49 14 chr11 14458549 14458898 -134324574 - MER46B DNA MER2_type 0 236 1 2398 74 0 3 chr11 14459563 14459859 -134323613 + AluY SINE Alu 1 295 -16 342 0 0 0 chr11 14459862 14459900 -134323572 + (TA)n Simple_repeat Simple_repeat 2 39 0 2293 105 76 15 chr11 14460183 14460526 -134322946 + THE1B LTR MaLR 1 364 0 22 0 0 0 chr11 14460681 14460703 -134322769 + AT_rich Low_complexity Low_complexity 1 22 0 1600 170 16 35 chr11 14462629 14462941 -134320531 + AluJo SINE Alu 1 306 -6 24 0 0 0 chr11 14462944 14462968 -134320504 + AT_rich Low_complexity Low_complexity 1 24 0 807 168 0 15 chr11 14463650 14463781 -134319691 + AluJb SINE Alu 167 295 -17 1556 182 46 14 chr11 14464230 14464510 -134318962 + AluJo SINE Alu 1 289 -23 24 0 0 0 chr11 14464510 14464534 -134318938 + AT_rich Low_complexity Low_complexity 1 24 0 363 322 133 0 chr11 14465713 14465856 -134317616 + MIR SINE MIR 49 210 -52 518 214 32 40 chr11 14466064 14466190 -134317282 + L1ME3 LINE L1 6028 6152 -10 1181 107 66 66 chr11 14467121 14467317 -134316155 + AluJb SINE Alu 87 282 -30 216 215 87 81 chr11 14468151 14468300 -134315172 + L2 LINE L2 3077 3226 -87 2207 101 7 19 chr11 14468434 14468742 -134314730 + AluSx SINE Alu 1 304 -8 402 21 0 0 chr11 14468802 14468849 -134314623 + (CA)n Simple_repeat Simple_repeat 1 47 0 316 240 40 56 chr11 14469143 14469268 -134314204 + MIR SINE MIR 21 143 -119 480 322 36 30 chr11 14469550 14469786 -134313686 + MIR SINE MIR 9 249 -13 718 194 0 8 chr11 14470193 14470317 -134313155 + FLAM_C SINE Alu 2 124 -19 1098 231 64 16 chr11 14472021 14472332 -134311140 - L2 LINE L2 -1111 2203 1878 182 200 0 0 chr11 14472354 14472389 -134311083 + MIR SINE MIR 114 148 -114 300 302 161 13 chr11 14472895 14473044 -134310428 + MIR SINE MIR 13 183 -79 310 294 149 72 chr11 14473374 14473609 -134309863 + MIR SINE MIR 10 262 0 688 280 60 36 chr11 14474708 14474881 -134308591 - MIR SINE MIR 0 262 80 2056 135 3 0 chr11 14474881 14475178 -134308294 + AluJb SINE Alu 1 298 -14 688 280 60 36 chr11 14475178 14475254 -134308218 - MIR SINE MIR -182 80 7 380 314 99 17 chr11 14475255 14475565 -134307907 + L1ME LINE L1 5445 5725 -396 267 114 0 0 chr11 14475990 14476025 -134307447 - U2 snRNA snRNA -153 35 1 423 0 0 0 chr11 14476027 14476074 -134307398 + (TG)n Simple_repeat Simple_repeat 2 48 0 236 339 94 20 chr11 14479212 14479457 -134304015 + L2 LINE L2 2128 2390 -924 2221 115 3 0 chr11 14479676 14479972 -134303500 + AluSc SINE Alu 1 297 -12 1223 180 5 9 chr11 14479986 14480203 -134303269 + AluJb SINE Alu 85 300 -12 357 191 96 0 chr11 14481732 14481826 -134301646 - MIR SINE MIR -49 213 111 1583 300 120 50 chr11 14482125 14482563 -134300909 - L2 LINE L2 -44 3228 2822 1639 160 44 7 chr11 14482563 14482838 -134300634 + AluJo SINE Alu 1 285 -27 1583 300 120 50 chr11 14482838 14483833 -134299639 - L2 LINE L2 -450 2822 1684 259 275 108 24 chr11 14485213 14485380 -134298092 - MIR SINE MIR -34 228 48 22 35 0 0 chr11 14486247 14486276 -134297196 + AT_rich Low_complexity Low_complexity 1 29 0 323 367 59 34 chr11 14486350 14486587 -134296885 - L2 LINE L2 -2 3270 3028 317 239 174 0 chr11 14487427 14487536 -134295936 - MIR SINE MIR -70 192 65 236 280 54 21 chr11 14488148 14488241 -134295231 - L2 LINE L2 -181 3091 2996 905 183 46 0 chr11 14488248 14488423 -134295049 - MER5A DNA MER1_type -6 183 1 472 263 23 69 chr11 14488761 14488978 -134294494 - MIR SINE MIR -35 227 21 233 317 141 7 chr11 14489137 14489279 -134294193 + MIR SINE MIR 38 198 -64 790 177 0 0 chr11 14489611 14489741 -134293731 + FRAM SINE Alu 40 169 -7 803 289 18 0 chr11 14490558 14490776 -134292696 + MER58A DNA MER1_type 1 222 -2 2273 125 0 0 chr11 14491402 14491707 -134291765 + AluSq SINE Alu 1 305 -8 337 250 12 12 chr11 14491786 14491870 -134291602 + MER117 DNA MER1_type 114 197 0 424 335 45 0 chr11 14492149 14492304 -134291168 + L1ME LINE L1 5533 5694 -427 748 216 126 0 chr11 14492546 14492745 -134290727 + MIR SINE MIR 26 249 -13 327 227 118 18 chr11 14496865 14496975 -134286497 + MIR SINE MIR 77 197 -65 251 246 43 0 chr11 14497260 14497329 -134286143 - MIR SINE MIR -70 192 121 283 234 64 74 chr11 14497915 14498089 -134285383 + MIR SINE MIR 19 192 -66 189 0 0 0 chr11 14498491 14498512 -134284960 + (A)n Simple_repeat Simple_repeat 1 21 0 2355 101 0 7 chr11 14499184 14499492 -134283980 + AluSq SINE Alu 1 306 -7 182 299 145 50 chr11 14499495 14499736 -134283736 - L2 LINE L2 -347 2967 2704 222 191 21 0 chr11 14500048 14500095 -134283377 - L2 LINE L2 -2 3311 3264 825 257 209 23 chr11 14500384 14500790 -134282682 - MLT1H LTR MaLR -13 536 12 187 244 0 0 chr11 14501364 14501405 -134282067 - L3 LINE CR1 -204 1373 1333 21 0 0 0 chr11 14501759 14501780 -134281692 + AT_rich Low_complexity Low_complexity 1 21 0 2226 122 87 44 chr11 14503703 14504139 -134279333 + MSTB2 LTR MaLR 1 455 -2 2320 89 0 3 chr11 14504232 14504524 -134278948 - AluSp SINE Alu -21 292 2 183 42 0 0 chr11 14506141 14506165 -134277307 + (TAAAAA)n Simple_repeat Simple_repeat 3 26 0 343 302 31 0 chr11 14506854 14506950 -134276522 + MIR SINE MIR 54 152 -110 21 36 0 0 chr11 14507813 14507841 -134275631 + AT_rich Low_complexity Low_complexity 1 28 0 1719 140 0 34 chr11 14508093 14508427 -134275045 + AluJb SINE Alu 1 324 0 1763 123 36 18 chr11 14508431 14508708 -134274764 + AluJb SINE Alu 22 303 -9 2197 116 13 0 chr11 14509535 14509837 -134273635 - AluSx SINE Alu -6 306 1 1006 166 52 0 chr11 14511211 14511422 -134272050 + L1MA8 LINE L1 6070 6291 0 1691 178 0 27 chr11 14511424 14511722 -134271750 + AluJo SINE Alu 1 290 -22 24 0 0 0 chr11 14511725 14511749 -134271723 + AT_rich Low_complexity Low_complexity 1 24 0 1508 161 18 25 chr11 14512099 14512378 -134271094 + AluJo SINE Alu 11 287 -25 22 56 0 0 chr11 14512378 14512414 -134271058 + AT_rich Low_complexity Low_complexity 1 36 0 3716 194 89 109 chr11 14512791 14513512 -134269960 - L1MC4a LINE L1 -505 7303 6569 1516 66 0 0 chr11 14513512 14513695 -134269777 - AluY SINE Alu -7 304 122 2201 98 3 35 chr11 14513697 14514013 -134269459 - AluY SINE Alu -5 306 1 3716 194 89 109 chr11 14514013 14514748 -134268724 - L1MC4a LINE L1 -1240 6568 5873 2487 121 28 15 chr11 14514755 14515151 -134268321 + MSTB1 LTR MaLR 7 407 -25 1105 171 69 9 chr11 14515154 14515371 -134268101 + MER30 DNA MER1_type 1 230 0 583 228 232 13 chr11 14515400 14515624 -134267848 - L1MC4a LINE L1 -1937 5871 5599 1135 201 124 35 chr11 14515657 14515995 -134267477 + L1MC4 LINE L1 7445 7812 -230 2323 96 0 10 chr11 14515996 14516297 -134267175 + AluSq SINE Alu 1 298 -15 1380 82 0 0 chr11 14516297 14516467 -134267005 + AluSg/x SINE Alu 134 303 -9 680 176 85 7 chr11 14516474 14516627 -134266845 + L1MC4 LINE L1 7809 7973 -69 23 0 0 0 chr11 14516879 14516902 -134266570 + AT_rich Low_complexity Low_complexity 1 23 0 366 23 0 0 chr11 14517308 14517351 -134266121 + (GA)n Simple_repeat Simple_repeat 2 44 0 2140 108 3 14 chr11 14517353 14517650 -134265822 - AluSx SINE Alu -18 294 1 1662 110 15 46 chr11 14517898 14518161 -134265311 + AluSq SINE Alu 44 298 -15 205 179 0 0 chr11 14518207 14518246 -134265226 + (CA)n Simple_repeat Simple_repeat 2 40 0 2414 104 0 3 chr11 14519220 14519528 -134263944 - AluSx SINE Alu -5 307 1 401 257 62 45 chr11 14519528 14519707 -134263765 - MIR SINE MIR -10 252 71 798 194 59 5 chr11 14520558 14520744 -134262728 - MIR SINE MIR -32 230 35 384 235 8 0 chr11 14521057 14521158 -134262314 - MIR SINE MIR -40 168 64 2284 70 49 0 chr11 14521353 14521637 -134261835 - AluSg SINE Alu -12 298 1 38 103 0 0 chr11 14523169 14523305 -134260167 + GC_rich Low_complexity Low_complexity 1 136 0 22 35 0 0 chr11 14523775 14523804 -134259668 + GC_rich Low_complexity Low_complexity 1 29 0 611 99 0 0 chr11 14524343 14524424 -134259048 - AluJ/FLAM SINE Alu -230 82 2 743 239 85 11 chr11 14524529 14524717 -134258755 + MLT1H1 LTR MaLR 91 292 -263 534 236 66 22 chr11 14524760 14524943 -134258529 + MLT1F LTR MaLR 269 450 -92 1441 168 98 7 chr11 14524955 14525191 -134258281 - AluJo SINE Alu -13 299 33 1784 148 31 3 chr11 14525191 14525482 -134257990 + AluSx SINE Alu 1 299 -13 1441 168 98 7 chr11 14525482 14525519 -134257953 - AluJo SINE Alu -279 33 1 1638 106 38 72 chr11 14525566 14525859 -134257613 + AluSx SINE Alu 12 294 -18 251 162 0 0 chr11 14525860 14525897 -134257575 - Alu SINE Alu -265 37 1 853 172 0 6 chr11 14525941 14526085 -134257387 + AluSg/x SINE Alu 144 288 -24 3614 174 56 10 chr11 14526085 14526796 -134256676 + L1MB7 LINE L1 5428 6171 -13 853 172 0 6 chr11 14526796 14526808 -134256664 + AluSg/x SINE Alu 288 299 -13 378 192 130 41 chr11 14527187 14527333 -134256139 - MIR3 SINE MIR -15 193 35 730 276 44 56 chr11 14527511 14527830 -134255642 + MER102b DNA MER1_type 26 340 -1 22 0 0 0 chr11 14527880 14527902 -134255570 + AT_rich Low_complexity Low_complexity 1 22 0 260 264 25 15 chr11 14527911 14528015 -134255457 + MER5A DNA MER1_type 24 138 -51 2359 90 0 7 chr11 14528038 14528338 -134255134 + AluSx SINE Alu 1 298 -14 2386 90 3 0 chr11 14528340 14528640 -134254832 + AluSp SINE Alu 1 301 -12 329 319 37 6 chr11 14529209 14529372 -134254100 - MIR3 SINE MIR -7 201 34 2203 127 0 0 chr11 14529507 14529807 -134253665 - AluSx SINE Alu -12 300 1 363 233 196 0 chr11 14529807 14529940 -134253532 + L1ME4a LINE L1 5699 5857 -264 1457 198 73 40 chr11 14529951 14530078 -134253394 + MLT1A1 LTR MaLR 1 122 -243 3298 60 0 79 chr11 14530078 14530558 -134252914 - MLT2A1 LTR ERVL -2 442 1 1457 198 73 40 chr11 14530558 14530759 -134252713 + MLT1A1 LTR MaLR 122 340 -25 2486 90 3 0 chr11 14530797 14531109 -134252363 + AluSp SINE Alu 1 313 0 285 214 128 132 chr11 14531180 14531246 -134252226 - MIR SINE MIR -12 250 185 2425 94 0 0 chr11 14531246 14531545 -134251927 + AluY SINE Alu 1 299 -12 285 214 128 132 chr11 14531545 14531721 -134251751 - MIR SINE MIR -77 185 9 3335 187 31 5 chr11 14531827 14532469 -134251003 - L1MB5 LINE L1 -154 6020 5362 469 333 17 8 chr11 14732537 14732774 -134050698 - L1ME3 LINE L1 -1 6161 5923 1029 230 20 17 chr11 14732851 14733147 -134050325 - L1ME3 LINE L1 -263 5899 5603 2507 98 33 0 chr11 14733163 14733531 -134049941 - L1PA10 LINE L1 -5 6163 5784 14178 50 3 5 chr11 14733631 14735496 -134047976 - L1P LINE L1 -4284 1862 2 3535 32 2 0 chr11 14735502 14735942 -134047530 - L1PA10 LINE L1 -373 5782 5342 181 244 0 24 chr11 14735942 14735983 -134047489 - L2 LINE L2 -81 3232 3193 574 174 0 0 chr11 14736208 14736306 -134047166 + AluJ/FLAM SINE Alu 1 98 -214 242 160 20 0 chr11 14736428 14736478 -134046994 + (TA)n Simple_repeat Simple_repeat 1 51 0 1168 166 67 107 chr11 14736485 14736858 -134046614 - LTR47B LTR ERVL -85 358 1 2317 147 40 7 chr11 14736932 14737382 -134046090 + L1MB3 LINE L1 5717 6181 -2 328 283 96 35 chr11 14737435 14737633 -134045839 - L2 LINE L2 -1268 2046 1837 3414 139 72 76 chr11 14737901 14739281 -134044191 + pTR5 LTR ERV1 45 2438 0 207 0 0 0 chr11 14739365 14739388 -134044084 + (TC)n Simple_repeat Simple_repeat 2 24 0 2303 83 0 0 chr11 14739405 14739695 -134043777 - AluY SINE Alu -21 290 1 430 260 0 19 chr11 14739695 14739799 -134043673 + L2 LINE L2 3210 3311 -2 594 240 52 70 chr11 14739825 14740054 -134043418 + L2 LINE L2 3000 3224 -89 466 323 111 5 chr11 14740078 14740267 -134043205 - MIR SINE MIR -31 231 23 27241 32 10 3 chr11 14740472 14744758 -134038714 + L1PA3 LINE L1 1841 6155 0 2980 46 0 0 chr11 14744776 14745172 -134038300 + L1PA4 LINE L1 5770 6165 0 279 203 257 0 chr11 14745179 14745253 -134038219 + L2 LINE L2 3221 3313 0 963 267 92 49 chr11 14746274 14746764 -134036708 - LTR33 LTR ERVL 0 521 11 1950 67 11 11 chr11 14746777 14747045 -134036427 - L1PA5 LINE L1 -6 6148 5881 650 283 102 13 chr11 14747459 14747685 -134035787 + MIR SINE MIR 17 262 0 635 322 75 33 chr11 14747698 14748030 -134035442 + L3 LINE CR1 1232 1577 0 643 240 16 0 chr11 14748186 14748315 -134035157 - FLAM_A SINE Alu -2 131 1 565 231 41 112 chr11 14748317 14748585 -134034887 - L2 LINE L2 -8 3305 3057 25791 42 47 2 chr11 14748686 14752125 -134031347 - L1P LINE L1 -2548 3598 7 605 91 101 0 chr11 14752125 14752224 -134031248 + MER1B DNA MER1_type 231 339 0 828 154 8 0 chr11 14752485 14752608 -134030864 - AluJb SINE Alu -188 124 1 1120 352 99 38 chr11 14754143 14755479 -134027993 + L2 LINE L2 1825 3254 -18 515 239 120 25 chr11 14755955 14756176 -134027296 - MIR SINE MIR 0 262 25 4576 89 33 34 chr11 14756583 14757533 -134025939 - MER11A LTR ERVK -167 1069 1 2335 123 0 0 chr11 14757686 14757995 -134025477 - AluSx SINE Alu -3 309 1 26 30 0 0 chr11 14758401 14758434 -134025038 + AT_rich Low_complexity Low_complexity 1 33 0 2351 100 0 0 chr11 14758943 14759252 -134024220 - AluY SINE Alu -2 309 1 23 33 0 0 chr11 14759256 14759286 -134024186 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr11 14760284 14760315 -134023157 + AT_rich Low_complexity Low_complexity 1 31 0 752 132 8 0 chr11 14760315 14760444 -134023028 + (TC)n Simple_repeat Simple_repeat 1 130 0 2017 127 10 0 chr11 14761003 14761303 -134022169 - AluSx SINE Alu 0 312 10 239 284 9 55 chr11 14761525 14761634 -134021838 - L2 LINE L2 -992 2322 2219 1796 235 127 6 chr11 14761974 14762477 -134020995 + MER69 DNA AcHobo 5 568 -658 1012 175 180 43 chr11 14762475 14762920 -134020552 + MER69 DNA AcHobo 2010 2515 -11 * 879 232 73 31 chr11 14763805 14764064 -134019408 - L2 LINE L2 -1 3312 3043 1915 153 0 20 chr11 14764225 14764519 -134018953 + AluJo SINE Alu 1 288 -24 241 191 0 0 chr11 14764530 14764577 -134018895 + MIR SINE MIR 146 192 -70 14069 123 29 13 chr11 14764653 14767003 -134016469 + Tigger1 DNA MER2_type 31 2418 0 692 292 178 8 chr11 14767306 14767730 -134015742 - L2 LINE L2 -238 3075 2581 1730 180 39 0 chr11 14767792 14768075 -134015397 + AluJo SINE Alu 1 294 -18 318 50 0 0 chr11 14768075 14768115 -134015357 + (TA)n Simple_repeat Simple_repeat 2 41 0 366 253 43 116 chr11 14768683 14768950 -134014522 - MLT1J LTR MaLR -154 296 59 24 0 0 0 chr11 14770964 14770988 -134012484 + AT_rich Low_complexity Low_complexity 1 24 0 2375 203 114 43 chr11 14771431 14772258 -134011214 - L1ME2 LINE L1 -6 6158 5274 2847 116 59 15 chr11 14772261 14772737 -134010735 - MER7C DNA MER2_type 0 602 106 934 220 160 18 chr11 14772763 14773150 -134010322 - L1ME2 LINE L1 -876 5270 4829 2757 254 58 32 chr11 14773569 14773977 -134009495 - L1ME1 LINE L1 0 6166 5770 1786 156 10 24 chr11 14773977 14774272 -134009200 - AluSx SINE Alu -21 291 1 2757 254 58 32 chr11 14774272 14775364 -134008108 - L1ME1 LINE L1 -396 5770 4549 1203 84 0 0 chr11 14775367 14775533 -134007939 + MER51B LTR ERV1 212 377 0 812 154 135 0 chr11 14775533 14775699 -134007773 + MER51B-int LTR ERV1 1 165 -4715 1044 165 0 0 chr11 14775702 14775884 -134007588 + MER51B-int LTR ERV1 419 600 -7216 4434 150 18 31 chr11 14775983 14776831 -134006641 + MER51B-int LTR ERV1 608 1444 -6372 565 220 1 0 chr11 14776842 14776990 -134006482 - L1ME1 LINE L1 -1587 4559 4411 466 126 0 58 chr11 14776990 14777077 -134006395 - Tigger5 DNA MER2_type 0 2323 2242 403 203 0 0 chr11 14777218 14777292 -134006180 + Tigger5 DNA MER2_type 2247 2320 -3 397 188 0 71 chr11 14777292 14777321 -134006151 - Tigger5 DNA MER2_type -340 78 48 1444 133 161 41 chr11 14777321 14777638 -134005834 + THE1A LTR MaLR 1 355 0 397 188 0 71 chr11 14777638 14777692 -134005780 - Tigger5 DNA MER2_type -370 48 1 4269 214 49 60 chr11 14777695 14777873 -134005599 - L1ME1 LINE L1 -1741 4405 4227 2567 129 20 41 chr11 14777873 14778316 -134005156 - Tigger2a DNA MER2_type 0 434 1 4269 214 49 60 chr11 14778316 14778987 -134004485 - L1ME1 LINE L1 -1919 4227 3550 2398 80 0 7 chr11 14778987 14779286 -134004186 - AluSp SINE Alu -16 297 1 4269 214 49 60 chr11 14779286 14780098 -134003374 - L1ME1 LINE L1 -2596 3550 2761 934 96 15 0 chr11 14780226 14780361 -134003111 - MER11A LTR ERVK 0 1266 1130 353 67 0 0 chr11 14780461 14780506 -134002966 + (GA)n Simple_repeat Simple_repeat 1 45 0 387 227 17 42 chr11 14780768 14780887 -134002585 + MLT1L LTR MaLR 174 289 -326 556 225 127 6 chr11 14780930 14781103 -134002369 + MLT1L LTR MaLR 422 615 0 31761 76 11 6 chr11 14781603 14787716 -133995756 - L1PA6 LINE L1 -1 6153 11 342 327 10 10 chr11 14788579 14788680 -133994792 - MIR SINE MIR -155 107 7 495 238 54 0 chr11 14790487 14790634 -133992838 + Tigger8 DNA MER2_type 338 492 -174 1765 118 0 8 chr11 14790966 14791203 -133992269 - AluSx SINE Alu -77 235 1 4873 158 27 36 chr11 14791412 14792230 -133991242 - L1PA16 LINE L1 -8 6158 5345 1997 157 0 10 chr11 14792230 14792530 -133990942 - AluJb SINE Alu -15 297 1 4873 158 27 36 chr11 14792530 14793145 -133990327 - L1PA16 LINE L1 -821 5345 4726 720 167 0 8 chr11 14793164 14793290 -133990182 + AluJb SINE Alu 188 312 0 187 319 176 0 chr11 14793538 14793629 -133989843 + MIR SINE MIR 54 160 -102 1399 258 98 7 chr11 14794410 14794828 -133988644 - LTR16B LTR ERVL 0 464 9 1641 181 11 0 chr11 14794916 14795192 -133988280 + AluJo SINE Alu 4 282 -30 21 0 0 0 chr11 14795192 14795213 -133988259 + AT_rich Low_complexity Low_complexity 1 21 0 1609 50 0 0 chr11 14795213 14795415 -133988057 + L1PA4 LINE L1 5951 6152 -3 320 238 43 6 chr11 14795439 14795603 -133987869 + (TA)n Simple_repeat Simple_repeat 1 170 0 1357 239 118 28 chr11 14796159 14796888 -133986584 - L2 LINE L2 0 3313 2511 191 339 0 0 chr11 14798196 14798258 -133985214 + MIR SINE MIR 200 261 -1 185 234 16 0 chr11 14798581 14798645 -133984827 + CT-rich Low_complexity Low_complexity 4 68 0 21 36 0 0 chr11 14799118 14799146 -133984326 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr11 14799494 14799521 -133983951 + AT_rich Low_complexity Low_complexity 1 27 0 1969 96 3 96 chr11 14800066 14800389 -133983083 - AluSx SINE Alu -19 293 1 185 258 32 32 chr11 14800796 14800858 -133982614 - L2 LINE L2 0 3313 3252 945 362 43 19 chr11 14801276 14802078 -133981394 + L2 LINE L2 2241 3062 -210 1300 270 130 4 chr11 14802100 14802563 -133980909 + LTR33 LTR ERVL 1 521 0 2027 135 10 3 chr11 14803068 14803365 -133980107 - AluSx SINE Alu -10 302 4 1062 239 39 16 chr11 14803467 14803722 -133979750 - MIR SINE MIR 0 262 2 290 348 126 7 chr11 14804211 14804346 -133979126 + L2 LINE L2 3122 3272 0 270 231 0 0 chr11 14804499 14804564 -133978908 + (TATATG)n Simple_repeat Simple_repeat 1 65 0 284 303 67 0 chr11 14804719 14804808 -133978664 + MIR SINE MIR 8 102 -160 208 359 76 0 chr11 14805845 14805937 -133977535 - L2 LINE L2 -2 3270 3172 1607 184 35 0 chr11 14806003 14806285 -133977187 + AluJo SINE Alu 1 292 -20 312 91 0 0 chr11 14806892 14806936 -133976536 + (TG)n Simple_repeat Simple_repeat 2 45 0 186 43 0 0 chr11 14808108 14808131 -133975341 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1518 125 96 48 chr11 14808135 14808407 -133975065 - AluJo SINE Alu -27 285 1 498 174 33 0 chr11 14808715 14808807 -133974665 - MIR SINE MIR -10 252 158 1821 310 26 5 chr11 14808970 14809547 -133973925 + HERV16 LTR ERVL 2433 3021 -1975 217 233 0 0 chr11 14809693 14809736 -133973736 + L2 LINE L2 2247 2289 -1025 * 228 252 0 107 chr11 14809735 14809838 -133973634 - L2 LINE L2 0 3313 3222 1822 313 84 45 chr11 14809847 14811177 -133972295 + HERV16 LTR ERVL 3135 4314 -682 308 270 24 56 chr11 14811245 14811371 -133972101 - HERV16 LTR ERVL -1644 3352 3231 767 275 33 69 chr11 14811412 14812120 -133971352 + HERV16 LTR ERVL 4505 4996 0 2179 131 3 0 chr11 14812150 14812441 -133971031 + AluSq SINE Alu 3 294 -19 1629 258 42 7 chr11 14812443 14812873 -133970599 + LTR16B LTR ERVL 20 464 0 233 280 144 51 chr11 14813542 14813660 -133969812 + MIR3 SINE MIR 10 138 -70 1758 169 55 39 chr11 14813837 14814221 -133969251 - MLT1B LTR MaLR 0 390 1 550 292 16 65 chr11 14814288 14814473 -133968999 + MER5A DNA MER1_type 14 189 0 540 231 91 91 chr11 14814483 14814725 -133968747 + MIR SINE MIR 20 261 -1 1518 129 64 0 chr11 14814915 14815148 -133968324 + MER1B DNA MER1_type 1 248 -91 11674 27 4 0 chr11 14815148 14817304 -133966168 - L1PA2 LINE L1 0 6155 3995 348 328 88 97 chr11 14818429 14818780 -133964692 + L2 LINE L2 2925 3272 0 240 353 27 60 chr11 14819115 14819265 -133964207 + L2 LINE L2 3119 3263 -9 832 163 6 30 chr11 14819725 14819891 -133963581 + L1PA6 LINE L1 5993 6154 0 281 404 26 26 chr11 14820562 14820755 -133962717 - MIR3 SINE MIR -9 199 7 213 121 0 0 chr11 14820787 14820820 -133962652 + (CA)n Simple_repeat Simple_repeat 1 33 0 338 284 113 105 chr11 14822219 14822741 -133960731 - L1M2 LINE L1 -5506 1343 818 362 296 177 15 chr11 14824564 14824767 -133958705 - MIR SINE MIR -15 247 12 190 130 19 37 chr11 14824908 14824962 -133958510 + CT-rich Low_complexity Low_complexity 3 55 0 269 361 46 0 chr11 14825998 14826106 -133957366 + MIR3 SINE MIR 79 191 -17 21 57 0 0 chr11 14826536 14826571 -133956901 + AT_rich Low_complexity Low_complexity 1 35 0 232 346 23 30 chr11 14827286 14827419 -133956053 + L2 LINE L2 2685 2816 -498 375 275 56 79 chr11 14827996 14828174 -133955298 - MIR3 SINE MIR -5 203 30 1452 165 4 23 chr11 14828880 14829141 -133954331 - AluJb SINE Alu -12 300 45 708 162 147 35 chr11 14829141 14829338 -133954134 + MLT1D LTR MaLR 27 245 -260 499 31 0 0 chr11 14829360 14829424 -133954048 + AluYa5/8 SINE Alu 171 234 -76 1060 212 29 23 chr11 14829427 14829677 -133953795 + MLT1D LTR MaLR 251 630 -24 2149 146 88 52 chr11 14829677 14830122 -133953350 - MLT1C LTR MaLR -2 465 5 1060 212 29 23 chr11 14830122 14830144 -133953328 + MLT1D LTR MaLR 630 650 -4 348 283 5 91 chr11 14830159 14830346 -133953126 - L1M4 LINE L1 -604 5580 5410 524 260 52 24 chr11 14830352 14830602 -133952870 - L1M4 LINE L1 -1161 4985 4729 1004 186 20 69 chr11 14830607 14830913 -133952559 - L1M4 LINE L1 -957 5189 4899 2359 197 25 39 chr11 14831046 14831321 -133952151 - L1M4 LINE L1 -1272 4874 4597 1483 141 70 0 chr11 14831321 14831605 -133951867 - L1MB2 LINE L1 -2 6169 5866 2359 197 25 39 chr11 14831605 14831978 -133951494 - L1M4 LINE L1 -1549 4597 4235 433 319 125 43 chr11 14831998 14832230 -133951242 + L1MEd LINE L1 510 760 -5359 998 93 0 0 chr11 14832242 14832382 -133951090 + AluY SINE Alu 172 311 0 1797 170 7 3 chr11 14832504 14832793 -133950679 + AluJb SINE Alu 1 290 -22 390 290 49 40 chr11 14832832 14833309 -133950163 + L1MEd LINE L1 1078 1601 -4709 405 0 0 0 chr11 14833575 14833620 -133949852 + (CA)n Simple_repeat Simple_repeat 2 46 0 346 250 108 0 chr11 14833922 14834042 -133949430 + L1MEd LINE L1 2318 2450 -3679 180 176 0 0 chr11 14834056 14834090 -133949382 + (CATATA)n Simple_repeat Simple_repeat 3 36 0 195 352 157 0 chr11 14834221 14834329 -133949143 - L2 LINE L2 -20 3252 3128 193 341 73 16 chr11 14834845 14834968 -133948504 - L2 LINE L2 -829 2485 2356 749 238 48 61 chr11 14835262 14835493 -133947979 + MIR SINE MIR 34 261 -1 21 0 0 0 chr11 14836497 14836518 -133946954 + AT_rich Low_complexity Low_complexity 1 21 0 2244 79 3 7 chr11 14837090 14837380 -133946092 - AluSg SINE Alu -16 294 6 1404 70 65 0 chr11 14838245 14838446 -133945026 - L1PA13 LINE L1 -11 6152 5939 1294 151 9 18 chr11 14839032 14839251 -133944221 - AluJb SINE Alu -12 300 84 3404 94 16 2 chr11 14839351 14839841 -133943631 - L1P4 LINE L1 -345 5823 5327 3849 209 78 96 chr11 14839841 14840450 -133943022 - L1ME LINE L1 -544 5618 5000 1501 199 7 10 chr11 14840450 14840741 -133942731 - AluJo SINE Alu -22 290 1 3849 209 78 96 chr11 14840741 14842184 -133941288 - L1ME LINE L1 -1162 5000 3591 208 331 99 8 chr11 14842272 14842393 -133941079 - MIR SINE MIR -108 154 23 657 278 124 22 chr11 14844933 14845296 -133938176 - HAL1 LINE L1 -14 2493 2094 826 284 161 14 chr11 14845308 14845893 -133937579 - HAL1 LINE L1 -979 1528 858 619 253 12 19 chr11 14845942 14846103 -133937369 - LTR16C LTR ERVL -56 435 276 591 174 143 31 chr11 14846103 14846264 -133937208 - MER3 DNA MER1_type 0 209 31 227 71 0 0 chr11 14846275 14846303 -133937169 - MER3 DNA MER1_type -154 55 28 441 317 66 38 chr11 14846481 14846800 -133936672 - HAL1 LINE L1 -2003 504 177 593 253 23 36 chr11 14847025 14847246 -133936226 - L1M4 LINE L1 -2378 3768 3551 183 42 0 0 chr11 14847270 14847294 -133936178 + (TG)n Simple_repeat Simple_repeat 1 24 0 318 266 55 0 chr11 14847345 14847454 -133936018 - HAL1 LINE L1 -810 1697 1583 295 211 22 56 chr11 14847763 14847853 -133935619 - MER5B DNA MER1_type -86 92 6 1665 213 153 46 chr11 14847862 14848563 -133934909 + L1ME1 LINE L1 4566 5341 -805 1907 185 127 37 chr11 14848607 14849126 -133934346 + L1ME1 LINE L1 5563 6128 -38 218 215 0 15 chr11 14849609 14849674 -133933798 + CT-rich Low_complexity Low_complexity 3 66 0 22 0 0 0 chr11 14849748 14849770 -133933702 + AT_rich Low_complexity Low_complexity 1 22 0 452 194 284 0 chr11 14849911 14850045 -133933427 + MIR SINE MIR 81 252 -10 591 328 73 49 chr11 14850439 14850906 -133932566 - L2 LINE L2 -21 3292 2815 2407 155 41 9 chr11 14851515 14851934 -133931538 + MSTB1 LTR MaLR 1 432 0 21 36 0 0 chr11 14851946 14851974 -133931498 + AT_rich Low_complexity Low_complexity 1 28 0 1050 246 31 67 chr11 14852023 14852442 -133931030 + L1MC4 LINE L1 7638 8041 -1 423 194 10 39 chr11 14852817 14852920 -133930552 + HsTC2 DNA Tc2 1 100 -1798 405 308 35 50 chr11 14853007 14853205 -133930267 - L1MEd LINE L1 -5509 610 416 306 321 38 6 chr11 14853646 14853805 -133929667 + MIR SINE MIR 99 262 0 403 291 79 65 chr11 14853898 14854190 -133929282 + MLT1K LTR MaLR 126 421 -167 314 280 21 0 chr11 14854310 14854403 -133929069 + MLT1K LTR MaLR 492 586 -2 2387 131 81 0 chr11 14854871 14855267 -133928205 - MSTA LTR MaLR 0 428 1 1863 174 3 0 chr11 14855580 14855885 -133927587 - AluJo SINE Alu -2 310 5 2119 127 3 3 chr11 14855971 14856279 -133927193 - AluSx SINE Alu -4 308 1 777 229 203 62 chr11 14856783 14857200 -133926272 + MLT2B1 LTR ERVL 1 488 -32 342 45 0 0 chr11 14857200 14857244 -133926228 + (CA)n Simple_repeat Simple_repeat 2 45 0 777 229 203 62 chr11 14857244 14857280 -133926192 + MLT2B1 LTR ERVL 488 518 -2 1067 163 6 0 chr11 14857896 14858068 -133925404 + AluJb SINE Alu 134 306 -6 869 215 0 0 chr11 14858189 14858352 -133925120 + MER3 DNA MER1_type 47 209 0 24 53 0 0 chr11 14858429 14858467 -133925005 + AT_rich Low_complexity Low_complexity 1 38 0 5356 30 5 0 chr11 14858684 14859326 -133924146 - L1P LINE L1 -1413 4733 4089 693 46 0 0 chr11 14859324 14859411 -133924061 + L1PA4 LINE L1 5701 5787 -368 * 43121 31 21 1 chr11 14859413 14865443 -133918029 + L1PA2 LINE L1 3 6155 0 3044 34 16 3 chr11 14865444 14865825 -133917647 + L1PA4 LINE L1 5770 6155 0 1280 202 36 4 chr11 14866120 14866367 -133917105 + MLT1F1 LTR MaLR 308 562 -5 290 322 0 0 chr11 14866579 14866666 -133916806 - MIR SINE MIR 0 262 176 253 288 76 30 chr11 14866807 14866939 -133916533 - L2 LINE L2 -55 3258 3121 1826 161 0 26 chr11 14866977 14867282 -133916190 + AluJo SINE Alu 3 299 -13 797 348 98 33 chr11 14867316 14867914 -133915558 - L2 LINE L2 -400 2914 2250 1141 142 42 58 chr11 14867914 14868154 -133915318 + MER46A DNA MER2_type 1 236 0 797 348 98 33 chr11 14868154 14868351 -133915121 - L2 LINE L2 -1064 2250 2067 557 308 25 0 chr11 14868366 14868525 -133914947 - L2 LINE L2 0 3313 3151 299 229 37 83 chr11 14868560 14868669 -133914803 - L2 LINE L2 -902 2412 2309 863 91 40 17 chr11 14868747 14868922 -133914550 + CT-rich Low_complexity Low_complexity 2 180 0 360 293 0 20 chr11 14868923 14869022 -133914450 + C-rich Low_complexity Low_complexity 5 101 0 513 166 7 40 chr11 14869326 14869477 -133913995 + C-rich Low_complexity Low_complexity 5 150 0 1290 271 110 35 chr11 14869478 14870270 -133913202 + L2 LINE L2 2461 3313 0 1129 297 148 10 chr11 14870269 14870781 -133912691 - L2 LINE L2 -1025 2289 1707 * 524 253 137 17 chr11 14871102 14871335 -133912137 - MIR SINE MIR -1 261 1 458 276 125 15 chr11 14872303 14872517 -133910955 - MIR SINE MIR -6 256 19 923 270 83 99 chr11 14873713 14874268 -133909204 - LTR67 LTR ERVL -10 547 2 21 0 0 0 chr11 14874356 14874377 -133909095 + AT_rich Low_complexity Low_complexity 1 21 0 198 318 63 0 chr11 14874637 14874700 -133908772 + MIR SINE MIR 8 74 -188 282 192 0 0 chr11 14874733 14874785 -133908687 - MIR SINE MIR -113 149 98 2472 73 0 0 chr11 14875105 14875407 -133908065 - AluY SINE Alu -9 302 1 1215 294 32 53 chr11 14875609 14876102 -133907370 - L2 LINE L2 0 3313 2831 1096 203 111 9 chr11 14876491 14876708 -133906764 + MER8 DNA MER2_type 1 239 0 22 0 0 0 chr11 14877169 14877191 -133906281 + AT_rich Low_complexity Low_complexity 1 22 0 1743 176 7 3 chr11 14877924 14878220 -133905252 - AluJb SINE Alu -15 297 1 241 291 48 0 chr11 14878399 14878502 -133904970 - L1M4 LINE L1 -2232 3914 3807 266 258 96 48 chr11 14878714 14878881 -133904591 - L1MC4 LINE L1 -267 7775 7601 755 224 83 26 chr11 14879416 14879608 -133903864 - MER3 DNA MER1_type -6 203 1 342 0 0 0 chr11 14879808 14879846 -133903626 + (TG)n Simple_repeat Simple_repeat 1 38 0 415 399 66 7 chr11 14880446 14880719 -133902753 + L3 LINE CR1 31 319 -1258 199 330 64 21 chr11 14880724 14880818 -133902654 + L3 LINE CR1 270 367 -1210 678 310 32 0 chr11 14880824 14881011 -133902461 + MIR SINE MIR 66 258 -4 2260 86 0 17 chr11 14881045 14881347 -133902125 - AluY SINE Alu -14 297 1 279 98 0 0 chr11 14881431 14881472 -133902000 - L1MB5 LINE L1 -6 6168 6128 * 19270 104 11 39 chr11 14881468 14887865 -133895607 - L1PA3 LINE L1 -2 6153 12 1913 217 21 34 chr11 14887873 14888407 -133895065 - L1M4 LINE L1 -1237 4909 4383 997 109 0 0 chr11 14888831 14888969 -133894503 - FLAM_C SINE Alu 0 143 6 335 291 0 50 chr11 14889831 14889972 -133893500 + LTR16A LTR ERVL 21 154 -296 1851 112 35 0 chr11 14889976 14890267 -133893205 + AluSx SINE Alu 16 315 0 425 276 0 19 chr11 14890279 14890384 -133893088 + LTR16A LTR ERVL 147 249 -201 2280 164 34 17 chr11 14890743 14891152 -133892320 - MSTB LTR MaLR -10 416 1 25 51 0 0 chr11 14891573 14891612 -133891860 + AT_rich Low_complexity Low_complexity 1 39 0 1971 150 0 3 chr11 14892726 14893039 -133890433 - AluSx SINE Alu 0 312 1 242 333 76 23 chr11 14893116 14893248 -133890224 - L3 LINE CR1 -22 1555 1417 7280 24 0 0 chr11 14893690 14894537 -133888935 - L1PA3 LINE L1 -3 6152 5306 298 222 16 127 chr11 14894648 14894774 -133888698 - L3 LINE CR1 -295 1282 1171 294 77 0 0 chr11 14894867 14894906 -133888566 - MLT2B1 LTR ERVL -2 462 424 240 135 22 34 chr11 14894939 14895028 -133888444 + (TA)n Simple_repeat Simple_repeat 2 89 0 1134 236 40 53 chr11 14895030 14895422 -133888050 - MLT2B1 LTR ERVL -92 428 1 907 208 104 74 chr11 14895428 14895861 -133887611 + Charlie4a DNA MER1_type 63 508 0 184 324 144 58 chr11 14895869 14896008 -133887464 - L3 LINE CR1 -469 1108 958 185 294 134 50 chr11 14896019 14896138 -133887334 - L3 LINE CR1 -780 797 669 277 294 71 0 chr11 14896141 14896226 -133887246 + MER5B DNA MER1_type 5 95 -83 24 67 0 0 chr11 14896293 14896338 -133887134 + AT_rich Low_complexity Low_complexity 1 45 0 221 292 83 50 chr11 14896479 14896599 -133886873 - L3 LINE CR1 -1137 440 317 638 315 74 61 chr11 14896664 14897055 -133886417 - LTR16C LTR ERVL 0 491 96 201 294 15 29 chr11 14898329 14898397 -133885075 - L2 LINE L2 -9 3304 3238 1946 143 3 25 chr11 14898651 14898965 -133884507 - MER1B DNA MER1_type -16 323 17 352 216 62 0 chr11 14898965 14899062 -133884410 - L1MDa LINE L1 -4527 2013 1911 * 33077 63 15 4 chr11 14899060 14904276 -133879196 - L1PA5 LINE L1 -1 6153 881 1120 220 43 16 chr11 14904377 14904700 -133878772 + L1MDa LINE L1 2213 2544 -3996 353 370 68 22 chr11 14905036 14905314 -133878158 + L1ME LINE L1 5448 5738 -383 608 266 98 29 chr11 14905862 14906106 -133877366 - MIR SINE MIR 0 262 2 23 0 0 0 chr11 14906341 14906364 -133877108 + AT_rich Low_complexity Low_complexity 1 23 0 263 315 56 0 chr11 14907346 14907435 -133876037 - MIR3 SINE MIR -6 202 109 22 56 0 0 chr11 14907889 14907925 -133875547 + AT_rich Low_complexity Low_complexity 1 36 0 962 191 0 27 chr11 14910916 14911104 -133872368 + MER3 DNA MER1_type 1 183 -26 1443 195 104 22 chr11 14911740 14912058 -133871414 + MER2 DNA MER2_type 1 344 -1 216 225 100 38 chr11 14913597 14913677 -133869795 - MIR SINE MIR -49 213 129 773 148 0 22 chr11 14913818 14913953 -133869519 + FLAM_A SINE Alu 1 132 -1 4646 180 58 3 chr11 14914153 14915057 -133868415 + Cheshire DNA MER1_type 1463 2415 -5 181 404 0 47 chr11 14915176 14915347 -133868125 - MIR3 SINE MIR -27 181 19 909 268 54 12 chr11 14915455 14915874 -133867598 - LTR33 LTR ERVL 0 521 6 14843 29 20 1 chr11 14915997 14918566 -133864906 - L1PA2 LINE L1 -1 6154 3550 2231 104 0 0 chr11 14918743 14919041 -133864431 - AluSc SINE Alu -11 298 1 459 312 219 5 chr11 14919243 14919458 -133864014 + MIR SINE MIR 2 262 0 311 274 69 39 chr11 14919528 14919630 -133863842 - L2 LINE L2 -6 3307 3203 1354 124 27 0 chr11 14919987 14920212 -133863260 - L1MA4 LINE L1 -17 6283 6053 800 160 0 0 chr11 14921219 14921338 -133862134 + FLAM_C SINE Alu 1 119 -24 489 196 152 9 chr11 14921349 14921461 -133862011 - FLAM_A SINE Alu -5 128 1 4161 251 106 13 chr11 14921645 14922945 -133860527 - L2 LINE L2 -391 2923 1446 268 238 36 48 chr11 14923021 14923105 -133860367 + MIR SINE MIR 7 89 -173 893 333 40 27 chr11 14923126 14923604 -133859868 - LTR33 LTR ERVL 0 521 38 224 261 226 0 chr11 14923627 14923742 -133859730 + MIR SINE MIR 110 250 -12 483 319 125 14 chr11 14923757 14923973 -133859499 + MIR SINE MIR 5 244 -18 51 31 0 0 chr11 14924997 14925062 -133858410 + AT_rich Low_complexity Low_complexity 1 65 0 30 45 0 0 chr11 14926253 14926297 -133857175 + AT_rich Low_complexity Low_complexity 1 44 0 475 307 60 14 chr11 14926373 14926591 -133856881 + L2 LINE L2 1609 1836 -1478 729 257 59 13 chr11 14926832 14927069 -133856403 - L1ME3A LINE L1 -242 5928 5681 302 236 90 22 chr11 14927070 14927159 -133856313 - MER5C DNA MER1_type -5 319 225 386 138 0 0 chr11 14927168 14927233 -133856239 - MER5C DNA MER1_type -200 124 60 326 114 51 0 chr11 14927983 14928062 -133855410 + (TA)n Simple_repeat Simple_repeat 1 83 0 803 216 10 41 chr11 14928062 14928256 -133855216 - MER106A DNA MER1_type -47 189 2 627 339 184 10 chr11 14928466 14928858 -133854614 + L3 LINE CR1 462 921 -656 643 259 49 0 chr11 14929256 14929418 -133854054 + MER58C DNA MER1_type 4 173 -42 28 0 0 0 chr11 14930540 14930568 -133852904 + AT_rich Low_complexity Low_complexity 1 28 0 892 197 124 32 chr11 14930812 14931061 -133852411 - L1ME3A LINE L1 -5 6165 5894 312 211 105 60 chr11 14931069 14931202 -133852270 - L1ME4a LINE L1 -4 6117 5979 2166 266 42 39 chr11 14931202 14932120 -133851352 - L1M4 LINE L1 -1834 4312 3392 213 266 63 13 chr11 14932662 14932741 -133850731 + MIR SINE MIR 91 173 -89 251 220 17 0 chr11 14932834 14932893 -133850579 - MER58 DNA MER1_type 0 2420 2361 885 264 86 35 chr11 14933125 14933538 -133849934 + L2 LINE L2 2706 3150 -163 186 346 0 0 chr11 14933804 14933856 -133849616 + L2 LINE L2 2995 3046 -226 2260 94 3 0 chr11 14933926 14934223 -133849249 - AluSp SINE Alu -15 298 1 3059 212 71 24 chr11 14934335 14934911 -133848561 + L1MDb LINE L1 43 590 -5816 1019 16 0 8 chr11 14934911 14935027 -133848445 + L1PA2 LINE L1 6032 6148 -7 214 39 0 0 chr11 14935027 14935053 -133848419 + (TAA)n Simple_repeat Simple_repeat 2 180 0 3059 212 71 24 chr11 14935061 14936059 -133847413 + L1MDb LINE L1 590 1790 -4616 * 5129 125 2 18 chr11 14936054 14936887 -133846585 + L1P LINE L1 2 821 -5325 1698 137 147 0 chr11 14937317 14937631 -133845841 - MER46B DNA MER2_type 0 236 2 3694 177 40 71 chr11 14938280 14938324 -133845148 - MER21B LTR ERV1 -53 810 766 291 54 0 0 chr11 14938324 14938361 -133845111 + (CAAG)n Simple_repeat Simple_repeat 3 39 0 3694 177 40 71 chr11 14938361 14938402 -133845070 - MER21B LTR ERV1 -97 766 725 2375 104 10 0 chr11 14938402 14938711 -133844761 - AluSx SINE Alu 0 312 1 3694 177 40 71 chr11 14938711 14939460 -133844012 - MER21B LTR ERV1 -138 725 1 210 167 0 0 chr11 14939822 14939858 -133843614 + T-rich Low_complexity Low_complexity 1 36 0 6836 59 19 6 chr11 14939981 14941342 -133842130 - L1PA7 LINE L1 -8 6146 4771 427 83 0 56 chr11 14941342 14941414 -133842058 + L1P3 LINE L1 1102 1169 -5292 * 25836 114 14 73 chr11 14941413 14944336 -133839136 - L1PA7 LINE L1 -1379 4767 2266 1803 98 0 0 chr11 14944336 14944571 -133838901 + AluSg SINE Alu 55 289 -21 25836 114 14 73 chr11 14944571 14946704 -133836768 - L1PA7 LINE L1 -3880 2266 9 2669 141 134 12 chr11 14946802 14947361 -133836111 - LTR24C LTR ERV1 -8 627 1 768 221 38 0 chr11 14947516 14947674 -133835798 + MER5A DNA MER1_type 1 164 -25 979 222 51 14 chr11 14947688 14947904 -133835568 + MER58A DNA MER1_type 1 224 0 267 295 0 26 chr11 14948311 14948389 -133835083 - L2 LINE L2 -4 3268 3193 365 272 32 0 chr11 14948915 14949073 -133834399 + L1MDb LINE L1 1148 1310 -5099 664 177 57 0 chr11 14949287 14949428 -133834044 + L1MA9 LINE L1 6164 6312 0 510 282 6 6 chr11 14949470 14949640 -133833832 + L1MDb LINE L1 1842 2011 -4576 6300 63 3 22 chr11 14949651 14950007 -133833465 + L1PA7 LINE L1 5315 5676 -478 2141 76 41 28 chr11 14950007 14950297 -133833175 + AluY SINE Alu 1 294 -17 6300 63 3 22 chr11 14950297 14950414 -133833058 + L1PA7 LINE L1 5676 5794 -360 2822 22 0 0 chr11 14950414 14950725 -133832747 + AluYa5 SINE Alu 1 311 0 6300 63 3 22 chr11 14950725 14951106 -133832366 + L1PA7 LINE L1 5794 6154 0 272 303 68 22 chr11 14951121 14951491 -133831981 + L1MDb LINE L1 2068 2454 -4133 274 129 81 16 chr11 14951504 14951566 -133831906 + L1MB8 LINE L1 998 1063 -5479 2190 99 0 45 chr11 14951601 14951915 -133831557 + AluSx SINE Alu 1 300 -12 556 236 42 51 chr11 14952021 14952334 -133831138 + L1MB7 LINE L1 870 1179 -5363 1936 223 108 11 chr11 14952361 14952988 -133830484 + L1MB7 LINE L1 4600 5287 -1357 1807 179 31 5 chr11 14953006 14953397 -133830075 + L1MB7 LINE L1 6074 6474 -208 1676 209 6 6 chr11 14953397 14953737 -133829735 + MLT1A1 LTR MaLR 1 340 -25 9184 23 25 0 chr11 14954003 14955881 -133827591 - L1PA3 LINE L1 0 6155 4251 893 188 28 24 chr11 14955912 14956125 -133827347 + L1MB7 LINE L1 6469 6682 0 644 200 186 27 chr11 14956131 14956426 -133827046 + L1MB8 LINE L1 3279 3620 -3024 458 264 7 0 chr11 14956452 14956592 -133826880 + L1MB8 LINE L1 3927 4067 -2577 2042 129 21 3 chr11 14956676 14957010 -133826462 + MLT1A1 LTR MaLR 26 365 0 1142 189 44 83 chr11 14957010 14957550 -133825922 - MLT1D LTR MaLR -18 487 1 1671 243 76 34 chr11 14957551 14958395 -133825077 + L1MB8 LINE L1 4075 4953 -1691 2104 112 0 32 chr11 14958515 14958828 -133824644 + AluSx SINE Alu 1 303 -9 1010 156 13 0 chr11 14958828 14958982 -133824490 + AluSg/x SINE Alu 137 292 -20 325 259 25 9 chr11 14959027 14959078 -133824394 + L1MB8 LINE L1 5752 5801 -896 1291 260 167 23 chr11 14959078 14959594 -133823878 - MLT1E LTR MaLR -2 591 2 325 259 25 9 chr11 14959594 14959755 -133823717 + L1MB8 LINE L1 5801 5967 -730 294 29 0 0 chr11 14959776 14959811 -133823661 + (CA)n Simple_repeat Simple_repeat 2 36 0 1551 178 58 41 chr11 14959816 14960158 -133823314 - MLT2D LTR ERVL -48 366 19 303 238 123 16 chr11 14960433 14960555 -133822917 + L2 LINE L2 3179 3313 0 5079 56 2 0 chr11 14960658 14961286 -133822186 + L1PA5 LINE L1 5526 6154 0 1575 178 56 7 chr11 14961305 14961591 -133821881 + AluJb SINE Alu 1 300 -12 28 61 0 0 chr11 14961591 14961640 -133821832 + AT_rich Low_complexity Low_complexity 1 49 0 473 206 235 18 chr11 14962281 14962451 -133821021 - MER6B DNA MER2_type -3 207 1 22 0 0 0 chr11 14962577 14962599 -133820873 + AT_rich Low_complexity Low_complexity 1 22 0 303 299 17 51 chr11 14963507 14963624 -133819848 + L1ME LINE L1 14 126 -5944 310 148 0 0 chr11 14963909 14963963 -133819509 - L1MB7 LINE L1 -31 6153 6100 462 48 0 0 chr11 14964006 14964069 -133819403 + L1M4 LINE L1 3573 3635 -2511 1171 196 57 21 chr11 14964084 14964415 -133819057 + L1MB8 LINE L1 6279 6621 -55 1407 188 56 32 chr11 14964416 14964757 -133818715 + MLT1A1 LTR MaLR 6 354 -11 472 208 117 53 chr11 14964818 14965048 -133818424 - MLT1F1 LTR MaLR -52 515 231 * 491 260 153 31 chr11 14965024 14965278 -133818194 - MLT1G1 LTR MaLR -295 300 16 229 273 65 0 chr11 14965591 14965668 -133817804 - MIR SINE MIR -59 203 122 1725 165 37 30 chr11 14965743 14966040 -133817432 - AluJo SINE Alu -13 299 1 18081 185 32 21 chr11 14966138 14973161 -133810311 + L1PA13 LINE L1 2 7601 0 2244 118 58 3 chr11 14973324 14973688 -133809784 + L1PA13 LINE L1 5769 6152 -11 784 255 150 3 chr11 14973699 14974025 -133809447 - L1ME3A LINE L1 -114 6056 5683 29 28 0 0 chr11 14974910 14974946 -133808526 + AT_rich Low_complexity Low_complexity 1 36 0 23 54 0 0 chr11 14975742 14975779 -133807693 + AT_rich Low_complexity Low_complexity 1 37 0 2036 131 0 10 chr11 14976784 14977090 -133806382 - AluSq SINE Alu -10 303 1 349 257 53 66 chr11 14977807 14977959 -133805513 + MIR SINE MIR 110 259 -3 265 341 101 14 chr11 14978149 14978287 -133805185 - MIR SINE MIR -111 151 2 255 330 23 0 chr11 14978322 14978410 -133805062 - MIR SINE MIR -14 248 159 186 167 28 0 chr11 14979049 14979085 -133804387 + L2 LINE L2 3174 3210 -62 25 0 0 0 chr11 14979268 14979293 -133804179 + AT_rich Low_complexity Low_complexity 1 25 0 1459 179 16 20 chr11 14979514 14979765 -133803707 + AluJo SINE Alu 1 250 -62 443 320 90 21 chr11 14980072 14980306 -133803166 - L1MEc LINE L1 -4818 1578 1329 552 159 56 0 chr11 14980310 14980417 -133803055 - MLT1D-int LTR MaLR -1256 115 3 1175 181 78 16 chr11 14980420 14980636 -133802836 - MLT1D LTR MaLR 0 505 271 2012 140 3 16 chr11 14980636 14980951 -133802521 - AluSx SINE Alu -1 311 1 1175 181 78 16 chr11 14980951 14980977 -133802495 - MLT1D LTR MaLR -234 271 248 1689 218 21 19 chr11 14981111 14981542 -133801930 - MLT1-int LTR MaLR -768 603 172 2236 67 0 3 chr11 14981799 14982116 -133801356 - AluY SINE Alu 0 316 1 330 368 30 13 chr11 14982116 14982350 -133801122 + ERVL LTR ERVL 436 673 -5091 275 262 12 0 chr11 14982546 14982630 -133800842 + ERVL LTR ERVL 871 955 -4530 2215 294 50 19 chr11 14982925 14983816 -133799656 + ERVL LTR ERVL 2000 2972 -2565 1088 312 70 29 chr11 14984200 14984796 -133798676 + ERVL LTR ERVL 3378 3998 -1656 1830 213 6 19 chr11 14984796 14985155 -133798317 + MLT2D LTR ERVL 1 449 -71 258 32 0 0 chr11 14985155 14985186 -133798286 + (TC)n Simple_repeat Simple_repeat 2 32 0 1830 213 6 19 chr11 14985186 14985258 -133798214 + MLT2D LTR ERVL 449 520 0 907 126 132 0 chr11 14985400 14985559 -133797913 - MSTA LTR MaLR 0 428 249 753 106 0 0 chr11 14985563 14985667 -133797805 - AluJb SINE Alu -208 104 1 892 102 57 6 chr11 14985667 14985824 -133797648 - L1 LINE L1 -1374 4772 4608 801 211 0 15 chr11 14985819 14986018 -133797454 - L1 LINE L1 -1788 4358 4163 * 24 0 0 0 chr11 14986243 14986267 -133797205 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr11 14986401 14986424 -133797048 + AT_rich Low_complexity Low_complexity 1 23 0 666 211 24 42 chr11 14986431 14986597 -133796875 + FAM SINE Alu 1 163 -12 37726 37 1 2 chr11 14988189 14992974 -133790498 + L1P LINE L1 7 4790 -1356 1890 96 43 28 chr11 14993074 14993356 -133790116 - AluY SINE Alu -25 286 1 234 0 0 0 chr11 14993743 14993769 -133789703 + (TG)n Simple_repeat Simple_repeat 2 27 0 253 333 64 50 chr11 14994043 14994184 -133789288 + MIR3 SINE MIR 8 150 -58 2095 111 7 0 chr11 14994282 14994588 -133788884 - AluSx SINE Alu 0 308 1 757 264 190 39 chr11 14994892 14995013 -133788459 + L2 LINE L2 2616 2717 -596 795 176 8 0 chr11 14995013 14995144 -133788328 + FLAM_C SINE Alu 2 133 0 757 264 190 39 chr11 14995144 14995633 -133787839 + L2 LINE L2 2717 3306 -7 2361 85 3 0 chr11 14996752 14997046 -133786426 - AluSc SINE Alu -12 297 3 447 236 72 48 chr11 14997200 14997714 -133785758 + HAL1 LINE L1 975 1567 -940 431 243 46 59 chr11 14997717 14997869 -133785603 - L2 LINE L2 0 3313 3164 342 151 0 0 chr11 14997881 14997954 -133785518 + GA-rich Low_complexity Low_complexity 2 74 0 413 297 39 11 chr11 14998020 14998202 -133785270 + HAL1 LINE L1 1569 1755 -752 1522 192 38 33 chr11 14998220 14998585 -133784887 + THE1C LTR MaLR 1 367 -8 2245 91 3 3 chr11 14998806 14999103 -133784369 + AluY SINE Alu 1 297 -14 276 191 12 95 chr11 15001038 15001122 -133782350 + MIR SINE MIR 65 141 -121 23 20 0 61 chr11 15001600 15001649 -133781823 + AT_rich Low_complexity Low_complexity 1 46 0 349 131 16 33 chr11 15001980 15002041 -133781431 - L2 LINE L2 0 3313 3254 21 57 0 0 chr11 15002739 15002774 -133780698 + AT_rich Low_complexity Low_complexity 1 35 0 300 291 60 26 chr11 15002792 15002909 -133780563 - MIR SINE MIR -60 202 82 204 179 0 0 chr11 15003136 15003175 -133780297 + (CATATA)n Simple_repeat Simple_repeat 4 42 0 4098 132 48 3 chr11 15003853 15004533 -133778939 - MER50 LTR ERV1 -23 711 1 247 226 0 38 chr11 15004533 15004586 -133778886 + L3 LINE CR1 1520 1570 -7 2299 94 0 0 chr11 15004818 15005105 -133778367 - AluSg SINE Alu -23 287 1 3350 65 10 0 chr11 15005121 15005719 -133777753 - L1PA7 LINE L1 -1 6153 5359 10719 93 9 25 chr11 15005719 15007436 -133776036 + L1P LINE L1 1669 3357 -2789 30 45 0 0 chr11 15007850 15007894 -133775578 + AT_rich Low_complexity Low_complexity 1 44 0 1064 212 62 21 chr11 15008181 15008422 -133775050 + MIR SINE MIR 11 261 -1 349 248 139 15 chr11 15008998 15009135 -133774337 - MIR SINE MIR -34 228 75 1097 155 130 0 chr11 15010030 15010237 -133773235 + MER46A DNA MER2_type 2 235 -1 191 273 0 0 chr11 15010338 15010382 -133773090 - L2 LINE L2 -8 3264 3221 23 54 0 0 chr11 15010998 15011035 -133772437 + AT_rich Low_complexity Low_complexity 1 37 0 1413 80 11 5 chr11 15011079 15011267 -133772205 + AluY SINE Alu 106 294 -17 204 265 44 116 chr11 15011354 15011535 -133771937 + L2 LINE L2 3062 3229 -84 26 30 0 0 chr11 15011546 15011579 -133771893 + AT_rich Low_complexity Low_complexity 1 33 0 257 232 188 0 chr11 15011583 15011652 -133771820 + L2 LINE L2 3232 3313 0 361 314 97 33 chr11 15014556 15014877 -133768595 - L2 LINE L2 -229 3043 2692 1099 172 4 147 chr11 15014889 15015168 -133768304 + MER8 DNA MER2_type 1 239 0 1376 143 174 31 chr11 15015187 15015601 -133767871 + LTR54B LTR ERV1 24 496 -2 394 307 124 51 chr11 15015709 15015966 -133767506 - L2 LINE L2 -826 2488 2213 365 176 24 24 chr11 15015981 15016066 -133767406 + LTR45 LTR ERV1 441 525 0 679 109 10 0 chr11 15016139 15016240 -133767232 + AluJ/FLAM SINE Alu 1 102 -210 508 301 92 58 chr11 15016259 15016672 -133766800 - L1MEc LINE L1 -3623 2592 2202 331 193 126 22 chr11 15016969 15017104 -133766368 - HAL1b LINE L1 -517 831 683 316 281 70 9 chr11 15017995 15018109 -133765363 + MIR3 SINE MIR 82 202 -6 651 174 99 0 chr11 15018468 15018589 -133764883 + FLAM_C SINE Alu 1 133 0 459 223 29 0 chr11 15019377 15019480 -133763992 - MER94 DNA DNA -2 132 27 24 0 0 0 chr11 15019675 15019699 -133763773 + AT_rich Low_complexity Low_complexity 1 24 0 182 281 258 22 chr11 15020969 15021058 -133762414 + MIR SINE MIR 19 128 -80 222 271 278 8 chr11 15022093 15022226 -133761246 + MIR SINE MIR 44 212 -50 21 36 0 0 chr11 15023005 15023033 -133760439 + AT_rich Low_complexity Low_complexity 1 28 0 2062 156 30 30 chr11 15023759 15024157 -133759315 + MSTB LTR MaLR 29 426 0 336 281 37 0 chr11 15024268 15024350 -133759122 + L2 LINE L2 1234 1318 -1996 847 297 238 3 chr11 15024362 15024685 -133758787 - L2 LINE L2 -4 3309 2911 276 312 161 0 chr11 15024748 15024841 -133758631 + MER91A DNA MER1_type 89 196 0 10752 25 6 3 chr11 15024888 15026930 -133756542 + L1PA3 LINE L1 4112 6155 0 376 316 64 15 chr11 15028378 15028570 -133754902 + MIR3 SINE MIR 6 208 0 951 273 38 35 chr11 15029892 15030211 -133753261 + L2 LINE L2 2365 2684 -630 * 1200 268 68 16 chr11 15030207 15030587 -133752885 + L2 LINE L2 2914 3313 0 186 336 76 42 chr11 15030924 15031043 -133752429 + L2 LINE L2 3150 3272 0 2307 73 3 3 chr11 15032080 15032380 -133751092 + AluY SINE Alu 1 300 -11 2590 42 0 10 chr11 15032768 15033080 -133750392 - AluY SINE Alu 0 311 3 214 286 113 15 chr11 15033414 15033547 -133749925 + MIR SINE MIR 95 240 -22 692 237 130 56 chr11 15035340 15035628 -133747844 - L2 LINE L2 0 3313 2993 2173 194 45 47 chr11 15035628 15036134 -133747338 - MLT1D LTR MaLR 0 505 1 692 237 130 56 chr11 15036134 15036200 -133747272 - L2 LINE L2 -320 2993 2933 1073 184 41 5 chr11 15037525 15037743 -133745729 - MER96B DNA MER1_type? -183 234 9 213 167 0 42 chr11 15038140 15038188 -133745284 + (TGG)n Simple_repeat Simple_repeat 1 46 0 289 301 98 14 chr11 15038446 15038589 -133744883 - MIR3 SINE MIR -45 163 9 * 473 236 95 47 chr11 15038576 15038724 -133744748 - L2 LINE L2 -1 3312 3158 474 290 89 30 chr11 15040767 15040936 -133742536 - MIR3 SINE MIR -11 197 19 183 156 0 0 chr11 15040936 15040968 -133742504 + T-rich Low_complexity Low_complexity 1 32 0 2441 233 19 15 chr11 15041074 15041603 -133741869 + LTR31 LTR ERV1 74 604 -15 2378 84 3 3 chr11 15043094 15043403 -133740069 - AluSq SINE Alu -4 309 1 1562 230 16 59 chr11 15043567 15044050 -133739422 + L1ME2 LINE L1 5672 6138 -26 384 233 48 107 chr11 15044097 15044303 -133739169 + L1MC4 LINE L1 7821 8014 -28 25 0 0 0 chr11 15044374 15044399 -133739073 + AT_rich Low_complexity Low_complexity 1 25 0 297 323 65 0 chr11 15044498 15044699 -133738773 + L1ME LINE L1 5559 5772 -349 995 290 63 43 chr11 15045001 15045184 -133738288 + LTR16A LTR ERVL 17 195 -255 1010 236 0 6 chr11 15045184 15045362 -133738110 - MER45A DNA AcHobo 0 178 2 995 290 63 43 chr11 15045362 15045592 -133737880 + LTR16A LTR ERVL 195 438 -12 2516 178 28 8 chr11 15045748 15046248 -133737224 + L1MB4 LINE L1 5634 6143 -37 917 193 19 42 chr11 15046258 15046470 -133737002 + L1MCc LINE L1 19 225 -6198 297 258 34 11 chr11 15046472 15046591 -133736881 + MLT2B2 LTR ERVL 99 221 -294 727 239 39 0 chr11 15046594 15046774 -133736698 + MER96B DNA MER1_type? 230 416 -1 186 133 0 0 chr11 15047979 15048009 -133735463 + (TG)n Simple_repeat Simple_repeat 2 31 0 375 23 0 0 chr11 15048694 15048738 -133734734 + (TG)n Simple_repeat Simple_repeat 2 45 0 195 254 42 14 chr11 15048999 15049070 -133734402 - MIR SINE MIR -76 132 60 523 259 55 17 chr11 15050540 15050743 -133732729 - MIR SINE MIR -14 248 2 3436 260 95 69 chr11 15051141 15052680 -133730792 - L1MEc LINE L1 -2016 4199 2635 2435 93 0 0 chr11 15052680 15052980 -133730492 - AluSp SINE Alu -13 300 1 3436 260 95 69 chr11 15052980 15053495 -133729977 - L1MEc LINE L1 -3580 2635 2135 263 188 78 0 chr11 15053559 15053623 -133729849 + L1ME2 LINE L1 6087 6155 -9 453 360 19 0 chr11 15054870 15055031 -133728441 + L2 LINE L2 2915 3078 -194 1595 202 11 57 chr11 15055117 15055288 -133728184 + MLT2C1 LTR ERVL 3 149 -248 2219 154 21 3 chr11 15055288 15055626 -133727846 + MER2 DNA MER2_type 1 344 0 1595 202 11 57 chr11 15055626 15055826 -133727646 + MLT2C1 LTR ERVL 149 357 -40 246 128 0 0 chr11 15055849 15055888 -133727584 + (TA)n Simple_repeat Simple_repeat 2 40 0 40 59 0 0 chr11 15055906 15055974 -133727498 + AT_rich Low_complexity Low_complexity 1 68 0 217 372 51 0 chr11 15056046 15056124 -133727348 + L2 LINE L2 3141 3222 -50 353 294 110 22 chr11 15056893 15057029 -133726443 + MER5A DNA MER1_type 36 183 -6 252 360 70 0 chr11 15057557 15057657 -133725815 + MIR SINE MIR 40 146 -62 1218 149 115 62 chr11 15057772 15058060 -133725412 + AluJo SINE Alu 1 303 -9 219 69 0 0 chr11 15058060 15058089 -133725383 + (GGAA)n Simple_repeat Simple_repeat 1 29 0 200 114 0 29 chr11 15058093 15058128 -133725344 + (GAAAA)n Simple_repeat Simple_repeat 1 34 0 1602 271 155 19 chr11 15058341 15058865 -133724607 + MLT1G1 LTR MaLR 1 595 0 1647 174 18 92 chr11 15059028 15059418 -133724054 - MLT1A1 LTR MaLR -4 361 1 295 225 151 86 chr11 15059438 15059865 -133723607 + L1ME4a LINE L1 5672 6116 -5 1861 157 3 10 chr11 15060144 15060444 -133723028 + AluJo SINE Alu 3 300 -12 193 336 93 37 chr11 15061139 15061246 -133722226 - L2 LINE L2 0 3272 3160 2639 135 38 21 chr11 15061392 15061813 -133721659 + MSTA LTR MaLR 1 428 0 224 392 0 0 chr11 15061905 15062002 -133721470 - MIR SINE MIR -7 255 159 470 391 13 4 chr11 15062110 15062348 -133721124 + L2 LINE L2 2738 2977 -337 330 324 123 9 chr11 15062529 15062748 -133720724 + L2 LINE L2 2977 3220 -52 195 129 0 0 chr11 15063224 15063255 -133720217 + (TGAG)n Simple_repeat Simple_repeat 1 31 0 828 159 0 108 chr11 15063414 15063590 -133719882 + L1MD3 LINE L1 6724 6880 -1115 2773 161 106 27 chr11 15063593 15064185 -133719287 + L1MD3 LINE L1 7352 7990 -5 416 234 189 17 chr11 15064812 15064987 -133718485 - MIR SINE MIR -10 252 48 1485 156 29 25 chr11 15065036 15065274 -133718198 + MER8 DNA MER2_type 1 239 0 1953 189 103 7 chr11 15065736 15066153 -133717319 - LTR32 LTR ERVL 0 471 15 232 363 15 37 chr11 15066469 15066604 -133716868 + MIR3 SINE MIR 13 144 -64 285 98 0 0 chr11 15066710 15066751 -133716721 + (CAA)n Simple_repeat Simple_repeat 2 42 0 277 206 35 52 chr11 15066765 15066867 -133716605 - MLT1I LTR MaLR -19 576 291 495 280 60 60 chr11 15066905 15067105 -133716367 - MLT1I LTR MaLR -125 284 85 334 242 113 40 chr11 15067225 15067349 -133716123 - MIR SINE MIR -2 260 128 318 256 175 29 chr11 15068117 15068254 -133715218 - L2 LINE L2 -9 3263 3107 1948 163 69 67 chr11 15068492 15068958 -133714514 + MLT1C LTR MaLR 1 467 0 332 286 100 54 chr11 15069129 15069370 -133714102 - MLT1L LTR MaLR -14 601 350 1000 276 58 48 chr11 15069565 15069988 -133713484 - MLT1H LTR MaLR -8 541 64 6166 114 14 3 chr11 15069988 15070478 -133712994 - L1PA16 LINE L1 -9 6157 5673 180 0 0 0 chr11 15070478 15070498 -133712974 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 6166 114 14 3 chr11 15070498 15071046 -133712426 - L1PA16 LINE L1 -493 5673 5105 1000 276 58 48 chr11 15071046 15071109 -133712363 - MLT1H LTR MaLR -485 64 3 225 220 0 60 chr11 15071111 15071161 -133712311 - MLT1K LTR MaLR -438 150 104 439 182 114 53 chr11 15073048 15073180 -133710292 - MER5B DNA MER1_type -5 173 34 211 188 275 0 chr11 15073364 15073433 -133710039 + MIR SINE MIR 66 153 -109 528 114 0 25 chr11 15073560 15073639 -133709833 - Charlie3 DNA MER1_type 0 2712 2636 19948 93 7 3 chr11 15073790 15075436 -133708036 - Charlie3 DNA MER1_type -86 2620 956 2286 131 39 28 chr11 15075436 15075795 -133707677 - THE1B LTR MaLR -1 363 1 19948 93 7 3 chr11 15075795 15076756 -133706716 - Charlie3 DNA MER1_type -1750 956 1 717 97 0 0 chr11 15077247 15077350 -133706122 + (TTCC)n Simple_repeat Simple_repeat 2 104 0 546 133 0 0 chr11 15077768 15077858 -133705614 + (GGGGA)n Simple_repeat Simple_repeat 4 93 0 278 280 30 106 chr11 15078704 15078794 -133704678 + MIR3 SINE MIR 72 152 -56 2049 125 0 14 chr11 15078794 15079120 -133704352 + AluSx SINE Alu 1 322 0 278 280 30 106 chr11 15079120 15079160 -133704312 + MIR3 SINE MIR 152 193 -15 1904 142 151 9 chr11 15080152 15080497 -133702975 - MSTA LTR MaLR -34 394 1 9097 166 28 13 chr11 15080497 15082117 -133701355 - MSTA-int LTR MaLR 0 1651 7 2170 123 0 25 chr11 15082118 15082436 -133701036 - AluSx SINE Alu -2 310 1 1975 157 141 8 chr11 15082444 15082819 -133700653 - MSTA LTR MaLR 0 428 4 * 2226 179 113 5 chr11 15082819 15083247 -133700225 - MLT2B1 LTR ERVL -42 478 3 247 257 86 0 chr11 15083367 15083437 -133700035 - L2 LINE L2 -38 3275 3200 1156 273 230 7 chr11 15083635 15084071 -133699401 + L2 LINE L2 1597 1934 -1380 2971 172 72 72 chr11 15084071 15084798 -133698674 - LTR8A LTR ERV1 0 727 1 1156 273 230 7 chr11 15084798 15084947 -133698525 + L2 LINE L2 1934 2313 -1001 597 232 38 44 chr11 15085410 15085660 -133697812 - L1ME LINE L1 -344 5822 5578 585 194 198 38 chr11 15086388 15086625 -133696847 + ORSL DNA AcHobo 1 275 0 24 53 0 0 chr11 15087463 15087501 -133695971 + AT_rich Low_complexity Low_complexity 1 38 0 592 275 58 79 chr11 15088222 15088479 -133694993 + L1MEd LINE L1 602 863 -5447 1711 207 24 30 chr11 15088479 15088851 -133694621 - MLT1A2 LTR MaLR -4 370 1 592 275 58 79 chr11 15088851 15089060 -133694412 + L1MEd LINE L1 863 1075 -5235 2016 147 7 7 chr11 15089060 15089367 -133694105 + AluSx SINE Alu 1 307 -5 592 275 58 79 chr11 15089367 15089905 -133693567 + L1MEd LINE L1 1075 1626 -4684 4162 193 31 8 chr11 15090818 15091667 -133691805 + MER63C DNA MER1_type 63 930 0 192 339 92 0 chr11 15092138 15092203 -133691269 - MIR SINE MIR -108 100 30 236 319 0 0 chr11 15092217 15092289 -133691183 + (CATA)n Simple_repeat Simple_repeat 3 74 0 423 280 42 98 chr11 15093114 15093316 -133690156 - MIR3 SINE MIR -13 195 2 272 302 93 39 chr11 15094049 15094178 -133689294 - L2 LINE L2 -21 3251 3116 405 221 32 21 chr11 15094233 15094328 -133689144 + MER5A DNA MER1_type 4 99 -90 249 260 68 14 chr11 15094340 15094413 -133689059 - MER5B DNA MER1_type -7 171 95 224 332 119 67 chr11 15094422 15094916 -133688556 - L2 LINE L2 -183 3089 2566 378 149 0 15 chr11 15094916 15094983 -133688489 + MLT1E3 LTR MaLR 559 624 0 703 253 6 6 chr11 15094983 15095149 -133688323 + MLT1E3-int LTR MaLR 1 166 -1205 183 213 106 0 chr11 15095359 15095406 -133688066 - MER5B DNA MER1_type -49 129 78 1060 213 29 14 chr11 15095478 15095685 -133687787 + MER63A DNA MER1_type 1 210 0 381 329 71 37 chr11 15096945 15097218 -133686254 - L2 LINE L2 -255 3058 2778 291 308 136 10 chr11 15097797 15097995 -133685477 + L3 LINE CR1 1344 1566 -11 1674 247 24 3 chr11 15098318 15098694 -133684778 - MLT1F1 LTR MaLR -1 566 183 1941 229 110 51 chr11 15098735 15098891 -133684581 + L1ME2 LINE L1 5255 5400 -764 1767 179 0 20 chr11 15098891 15099188 -133684284 - AluJb SINE Alu -17 295 5 1941 229 110 51 chr11 15099188 15099655 -133683817 + L1ME2 LINE L1 5400 5940 -224 331 55 18 18 chr11 15099655 15099710 -133683762 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 1941 229 110 51 chr11 15099710 15099903 -133683569 + L1ME2 LINE L1 5940 6120 -44 641 318 13 26 chr11 15100037 15100270 -133683202 + MIR SINE MIR 8 237 -25 292 243 69 49 chr11 15100287 15100431 -133683041 + L1M4 LINE L1 3818 3964 -2182 312 221 12 35 chr11 15100481 15100567 -133682905 + L1M4 LINE L1 4084 4167 -1979 22 0 0 0 chr11 15100859 15100881 -133682591 + AT_rich Low_complexity Low_complexity 1 22 0 401 340 65 25 chr11 15101055 15101334 -133682138 - L1M4 LINE L1 -3633 2513 2224 266 276 29 35 chr11 15101857 15102027 -133681445 - L1ME1 LINE L1 -237 5929 5761 524 17 0 0 chr11 15102148 15102208 -133681264 + L1PA6 LINE L1 6093 6152 -2 27 29 0 0 chr11 15102283 15102317 -133681155 + AT_rich Low_complexity Low_complexity 1 34 0 1001 122 9 176 chr11 15102317 15102636 -133680836 - MLT1B LTR MaLR -124 257 1 1040 200 96 40 chr11 15102867 15103236 -133680236 + MSTC LTR MaLR 3 428 0 263 301 12 12 chr11 15103332 15103415 -133680057 - MLT1F1 LTR MaLR -381 168 86 21228 29 0 4 chr11 15104062 15107232 -133676240 + L1PA3 LINE L1 2983 6155 0 865 265 149 25 chr11 15107432 15108039 -133675433 - L2 LINE L2 0 3313 2650 335 244 124 96 chr11 15108033 15108324 -133675148 + L3 LINE CR1 1278 1576 -1 * 705 175 7 44 chr11 15108341 15108478 -133674994 + L2 LINE L2 3182 3313 0 222 351 184 0 chr11 15108480 15108594 -133674878 + MIR3 SINE MIR 66 200 -8 675 265 18 6 chr11 15109439 15109605 -133673867 - MIR SINE MIR -55 207 40 644 179 68 0 chr11 15112543 15112660 -133670812 - MER63 DNA MER1_type 0 1060 936 780 202 75 60 chr11 15112686 15112904 -133670568 - MER63D DNA MER1_type -631 430 217 2285 97 0 0 chr11 15112904 15113193 -133670279 + AluSx SINE Alu 1 289 -23 780 202 75 60 chr11 15113193 15113335 -133670137 - MER63D DNA MER1_type -844 217 3 265 292 0 0 chr11 15114435 15114500 -133668972 + GA-rich Low_complexity Low_complexity 2 66 0 183 80 0 0 chr11 15114556 15114581 -133668891 + (CGG)n Simple_repeat Simple_repeat 2 26 0 402 242 67 56 chr11 15115131 15115291 -133668181 + MIR SINE MIR 22 183 -62 215 219 78 31 chr11 15117395 15117459 -133666013 + L2 LINE L2 3205 3271 -1 2580 170 54 36 chr11 15118502 15118948 -133664524 + L1MA9 LINE L1 5712 6171 -141 198 0 0 0 chr11 15118948 15118970 -133664502 + (CA)n Simple_repeat Simple_repeat 1 22 0 2580 170 54 36 chr11 15118970 15119081 -133664391 + L1MA9 LINE L1 6171 6279 -33 198 342 150 0 chr11 15119310 15119430 -133664042 - MIR SINE MIR -1 261 124 21 57 0 0 chr11 15119746 15119781 -133663691 + AT_rich Low_complexity Low_complexity 1 35 0 417 230 174 43 chr11 15119934 15120095 -133663377 + MIR3 SINE MIR 16 197 -11 2179 164 101 42 chr11 15121600 15122077 -133661395 - MLT1D LTR MaLR 0 505 1 459 315 123 14 chr11 15123579 15123798 -133659674 + MIR SINE MIR 20 262 0 2584 147 41 14 chr11 15125007 15125422 -133658050 - MSTC LTR MaLR 0 428 3 305 77 19 39 chr11 15126504 15126556 -133656916 + L1PA12 LINE L1 10 60 -7521 1391 128 0 15 chr11 15126563 15126767 -133656705 - AluSx SINE Alu -105 207 7 2131 239 31 6 chr11 15126772 15127761 -133655711 - L1MB3 LINE L1 -352 5831 4818 2210 120 7 0 chr11 15127803 15128112 -133655360 + AluSp SINE Alu 1 311 -2 233 260 14 0 chr11 15128141 15128214 -133655258 - LTR50 LTR ERVL -714 81 8 1487 208 5 73 chr11 15128222 15128461 -133655011 - L1MA4 LINE L1 -140 6160 5961 1834 149 30 0 chr11 15128461 15128730 -133654742 - AluSx SINE Alu -35 277 1 1487 208 5 73 chr11 15128730 15128913 -133654559 - L1MA4 LINE L1 -339 5961 5767 471 230 109 12 chr11 15128934 15129099 -133654373 + HsTC2 DNA Tc2 1612 1792 -106 246 298 60 40 chr11 15129229 15129380 -133654092 - MER5B DNA MER1_type -24 154 1 943 214 36 0 chr11 15129485 15129681 -133653791 - MER6B DNA MER2_type -7 203 1 1485 143 5 5 chr11 15131565 15131788 -133651684 + AluSq SINE Alu 2 224 -89 1270 197 227 36 chr11 15131790 15132828 -133650644 + SATR1 Satellite Satellite 1 1235 -46 2269 176 108 24 chr11 15132866 15135800 -133647672 + SATR1 Satellite Satellite 1 3180 -132 24092 85 4 5 chr11 15135800 15140602 -133642870 + L1PA7 LINE L1 1677 6468 -1 330 268 147 13 chr11 15140643 15140800 -133642672 - HAL1b LINE L1 -153 1195 1018 3298 208 68 30 chr11 15141112 15142551 -133640921 - L1ME2 LINE L1 -13 6220 4726 1540 267 40 28 chr11 15142553 15143204 -133640268 - L1ME2 LINE L1 -1864 4351 3693 1653 289 39 55 chr11 15143238 15144288 -133639184 - L1ME2 LINE L1 -5325 1071 39 229 288 60 38 chr11 15144378 15144562 -133638910 - HAL1b LINE L1 -1086 262 75 331 309 71 8 chr11 15145003 15145129 -133638343 + L2 LINE L2 3012 3145 -168 2249 204 118 38 chr11 15146056 15146808 -133636664 + Charlie2 DNA MER1_type 1855 2688 -174 1750 140 0 23 chr11 15146808 15147072 -133636400 + AluSx SINE Alu 39 296 -16 2249 204 118 38 chr11 15147072 15147193 -133636279 + Charlie2 DNA MER1_type 2688 2798 -64 219 282 141 29 chr11 15147210 15147380 -133636092 + MIR SINE MIR 71 259 -3 455 283 181 13 chr11 15147697 15147934 -133635538 + L2 LINE L2 3037 3313 0 268 401 62 0 chr11 15147970 15148132 -133635340 + L3 LINE CR1 471 642 -935 682 182 34 62 chr11 15148671 15148847 -133634625 - MER3 DNA MER1_type -22 187 17 1900 120 0 0 chr11 15149531 15149790 -133633682 + AluSg SINE Alu 35 293 -17 272 299 28 73 chr11 15150209 15150386 -133633086 + L3 LINE CR1 754 922 -655 811 95 103 0 chr11 15150762 15150888 -133632584 - MER85 DNA T2_type 0 139 1 318 167 0 0 chr11 15150981 15151035 -133632437 + MLT1K LTR MaLR 517 570 -18 210 366 54 0 chr11 15151046 15151139 -133632333 + L3 LINE CR1 955 1052 -525 218 303 26 26 chr11 15151170 15151246 -133632226 + L3 LINE CR1 1148 1223 -354 248 317 58 19 chr11 15151301 15151405 -133632067 - L3 LINE CR1 -27 1550 1443 212 326 95 32 chr11 15151415 15151510 -133631962 - L2 LINE L2 -8 3264 3164 2962 164 57 66 chr11 15153905 15154602 -133628870 - LTR8 LTR ERV1 0 691 1 1294 213 84 0 chr11 15154602 15154875 -133628597 - HUERS-P1 LTR ERV1 0 6263 5968 638 219 171 0 chr11 15154977 15155141 -133628331 - LTR49-int LTR ERV1 -57 6274 6083 1814 176 53 48 chr11 15155214 15155629 -133627843 - LTR49-int LTR ERV1 -541 5790 5374 1408 77 0 0 chr11 15155630 15155799 -133627673 - AluYa5 SINE Alu -12 299 131 3734 156 24 74 chr11 15155799 15155994 -133627478 - LTR49-int LTR ERV1 -630 5633 5430 2003 128 14 3 chr11 15155994 15156290 -133627182 - AluY SINE Alu -10 301 3 3734 156 24 74 chr11 15156290 15156904 -133626568 - LTR49-int LTR ERV1 -833 5430 4865 6057 218 19 66 chr11 15156930 15158833 -133624639 + L1P3 LINE L1 1209 3779 -3805 2060 135 62 8 chr11 15158833 15159189 -133624283 + THE1C LTR MaLR 1 375 0 7741 132 175 6 chr11 15159189 15160541 -133622931 + THE1C-int LTR MaLR 1 1580 0 1795 170 62 14 chr11 15160541 15160899 -133622573 + THE1C LTR MaLR 1 375 0 6976 147 5 13 chr11 15160900 15162129 -133621343 + L1P3 LINE L1 3776 4994 -2590 6080 206 14 13 chr11 15212134 15213488 -133569984 - L1 LINE L1 -2343 5222 3868 2855 204 34 55 chr11 15213492 15213720 -133569752 - L1M4 LINE L1 -841 6326 6095 2386 74 3 3 chr11 15213720 15214019 -133569453 + AluY SINE Alu 1 299 -12 2855 204 34 55 chr11 15214019 15214610 -133568862 - L1M4 LINE L1 -1072 6095 5524 * 11049 189 21 57 chr11 15214595 15216675 -133566797 - L1M4 LINE L1 -4975 2193 202 2171 136 0 0 chr11 15216675 15216983 -133566489 - AluSx SINE Alu -4 308 1 11049 189 21 57 chr11 15216983 15217178 -133566294 - L1M4 LINE L1 -6966 202 1 642 118 36 9 chr11 15217224 15217334 -133566138 - L1 LINE L1 -4613 2952 2840 8206 124 7 3 chr11 15217348 15218561 -133564911 - HSMAR2 DNA Mariner -45 1257 41 16735 165 11 33 chr11 15218581 15218599 -133564873 - L1 LINE L1 -4702 2863 2846 3134 127 33 0 chr11 15218599 15219081 -133564391 - L1PA14 LINE L1 0 6161 5664 16735 165 11 33 chr11 15219081 15219584 -133563888 - L1 LINE L1 -4719 2846 2333 1657 26 0 0 chr11 15219584 15219777 -133563695 + L1PA4 LINE L1 5960 6152 -3 16735 165 11 33 chr11 15219777 15222090 -133561382 - L1 LINE L1 -5232 2333 91 277 259 52 35 chr11 15222512 15222628 -133560844 - LTR67 LTR ERVL 0 557 440 * 1104 272 108 46 chr11 15222609 15223046 -133560426 - MLT1F LTR MaLR -78 464 1 1458 196 7 123 chr11 15226178 15226591 -133556881 - MLT1A1 LTR MaLR 0 365 1 305 278 70 32 chr11 15226656 15226843 -133556629 - L1ME4a LINE L1 -260 5861 5668 469 265 117 25 chr11 15226925 15227087 -133556385 - L1ME4a LINE L1 -2167 5641 5465 552 325 24 0 chr11 15227158 15227367 -133556105 + L3 LINE CR1 1330 1543 -34 * 1319 252 52 31 chr11 15227366 15227810 -133555662 + L2 LINE L2 1176 1628 -1686 384 302 44 22 chr11 15227786 15227968 -133555504 + L2 LINE L2 2821 3006 -307 * 694 247 42 25 chr11 15227988 15228271 -133555201 + L1M4 LINE L1 2206 2493 -3653 617 301 177 15 chr11 15229114 15229526 -133553946 + LTR33 LTR ERVL 38 516 -5 192 274 63 32 chr11 15230158 15230253 -133553219 - L2 LINE L2 -86 3227 3130 211 326 118 52 chr11 15230349 15230732 -133552740 - L2 LINE L2 -501 2813 2406 1686 170 14 7 chr11 15231246 15231540 -133551932 + AluJb SINE Alu 2 297 -15 423 234 154 23 chr11 15231610 15231785 -133551687 + MIR SINE MIR 49 246 -16 705 274 5 5 chr11 15232360 15232546 -133550926 - MER5A DNA MER1_type -1 188 3 277 179 0 0 chr11 15233075 15233131 -133550341 + MIR3 SINE MIR 104 159 -49 699 181 5 96 chr11 15233217 15233405 -133550067 + MER63B DNA MER1_type 4 174 -262 326 263 42 0 chr11 15233408 15233503 -133549969 + MER5A DNA MER1_type 91 189 0 1399 187 6 63 chr11 15234127 15234443 -133549029 - AluJo SINE Alu -14 298 1 499 185 0 0 chr11 15234555 15234636 -133548836 + MER5A DNA MER1_type 2 82 -107 321 314 46 20 chr11 15235797 15235950 -133547522 + MIR SINE MIR 73 229 -33 436 209 75 45 chr11 15235965 15236099 -133547373 + MIR SINE MIR 74 211 -51 426 20 0 0 chr11 15236715 15236766 -133546706 + (TG)n Simple_repeat Simple_repeat 2 52 0 2869 50 3 3 chr11 15236961 15237304 -133546168 - HERVK11 LTR ERVK -4699 3254 2912 * 3069 84 40 3 chr11 15237298 15237875 -133545597 - HERVK11 LTR ERVK -5255 2698 1165 * 5036 149 35 57 chr11 15237873 15238871 -133544601 - HERVK11 LTR ERVK -6977 976 1 6986 103 20 24 chr11 15238871 15239957 -133543515 - MER11C LTR ERVK 0 1236 1 2416 102 25 0 chr11 15240545 15240907 -133542565 + L1MA1 LINE L1 5932 6302 0 385 204 21 11 chr11 15242482 15242575 -133540897 - MIR SINE MIR -70 138 45 271 228 22 0 chr11 15245878 15245970 -133537502 + CT-rich Low_complexity Low_complexity 2 95 0 638 216 66 56 chr11 15246510 15246723 -133536749 - MIR SINE MIR -1 261 47 593 233 121 102 chr11 15246852 15247422 -133536050 - L1MC5 LINE L1 -51 7910 7330 230 250 20 50 chr11 15247422 15247522 -133535950 - L2 LINE L2 -447 2867 2771 513 239 398 13 chr11 15247522 15248057 -133535415 - LTR50 LTR ERVL -2 793 53 4460 231 77 18 chr11 15248061 15248532 -133534940 - L1MC4 LINE L1 -743 5403 4961 1044 183 56 103 chr11 15248532 15248941 -133534531 + MLT1B LTR MaLR 1 390 0 4460 231 77 18 chr11 15248941 15250473 -133532999 - L1MC4 LINE L1 -1185 4961 4086 2186 231 76 11 chr11 15250483 15251008 -133532464 + MLT1F1 LTR MaLR 1 559 -8 320 246 34 51 chr11 15251010 15251128 -133532344 - L1MC4 LINE L1 -2093 4053 3938 1642 86 0 0 chr11 15251144 15251354 -133532118 + L1PA12 LINE L1 5927 6136 -32 2112 224 50 34 chr11 15251454 15252268 -133531204 - L1MC4 LINE L1 -2516 3630 2804 51 14 0 14 chr11 15252281 15252312 -133531160 + AT_rich Low_complexity Low_complexity 1 31 -37 1346 114 19 0 chr11 15252312 15252522 -133530950 - L1PB1 LINE L1 -5 6146 5933 51 14 0 14 chr11 15252522 15252559 -133530913 + AT_rich Low_complexity Low_complexity 31 68 0 4672 95 16 22 chr11 15252867 15252892 -133530580 + L1PB1 LINE L1 5464 5488 -663 2427 103 3 0 chr11 15252892 15253202 -133530270 + AluSp SINE Alu 1 311 -2 4672 95 16 22 chr11 15253202 15253868 -133529604 + L1PB1 LINE L1 5488 6151 0 744 228 20 0 chr11 15253869 15254066 -133529406 + L1M4 LINE L1 2320 2520 -3626 6510 190 51 21 chr11 15254091 15255705 -133527767 - L1P5 LINE L1 -674 5477 3814 467 128 37 18 chr11 15257342 15257451 -133526021 + GA-rich Low_complexity Low_complexity 3 113 0 2021 125 4 0 chr11 15258870 15259149 -133524323 - AluSx SINE Alu -32 280 1 401 308 112 9 chr11 15260729 15260943 -133522529 - MIR SINE MIR -1 261 26 243 63 0 0 chr11 15261735 15261770 -133521702 + MIR SINE MIR 112 145 -117 355 331 0 15 chr11 15261889 15262019 -133521453 + MIR SINE MIR 20 147 -61 358 349 51 53 chr11 15262116 15262675 -133520797 - L2 LINE L2 0 3272 2716 221 154 0 0 chr11 15262688 15262727 -133520745 - L2 LINE L2 0 3272 3234 26 64 0 0 chr11 15262868 15262915 -133520557 + AT_rich Low_complexity Low_complexity 1 47 0 3721 224 140 11 chr11 15262941 15264049 -133519423 - L1MC4 LINE L1 -104 7938 6688 239 268 110 0 chr11 15264122 15264204 -133519268 - L2 LINE L2 -222 3091 3001 1429 296 40 43 chr11 15264367 15265338 -133518134 + L2 LINE L2 2308 3272 0 252 328 40 8 chr11 15265343 15265468 -133518004 - L2 LINE L2 -861 2453 2325 210 247 13 26 chr11 15265929 15266006 -133517466 + (CTCA)n Simple_repeat Simple_repeat 1 76 0 790 293 159 11 chr11 15266795 15267437 -133516035 - L2 LINE L2 0 3313 2577 204 333 10 20 chr11 15267784 15267883 -133515589 - L2 LINE L2 -214 3058 2961 254 273 13 13 chr11 15268437 15268514 -133514958 - MIR3 SINE MIR -42 166 90 1500 132 0 0 chr11 15269714 15269927 -133513545 + AluSg/x SINE Alu 95 307 -5 474 288 20 14 chr11 15269927 15270073 -133513399 + MIR3 SINE MIR 48 194 -14 499 224 21 36 chr11 15270316 15270484 -133512988 - MIR SINE MIR -62 146 25 825 266 136 26 chr11 15271123 15271706 -133511766 - L1MEd LINE L1 -1278 4851 4205 2511 264 104 37 chr11 15271929 15273870 -133509602 - L1MEd LINE L1 -1915 4214 2119 21 0 0 0 chr11 15273916 15273937 -133509535 + AT_rich Low_complexity Low_complexity 1 21 0 1781 195 0 3 chr11 15274192 15274494 -133508978 - AluJb SINE Alu -11 301 1 915 279 127 34 chr11 15274553 15275343 -133508129 - L1MEd LINE L1 -4612 1698 689 228 294 0 15 chr11 15275355 15275423 -133508049 - L1MEd LINE L1 -5589 530 464 285 313 50 12 chr11 15275668 15275828 -133507644 - L1MEd LINE L1 -5943 176 11 454 221 123 26 chr11 15275957 15276111 -133507361 + MIR SINE MIR 78 246 -16 553 193 72 66 chr11 15276111 15276277 -133507195 - MER104 DNA Tc2 0 180 14 295 292 204 0 chr11 15276609 15276722 -133506750 - MLT1J2 LTR MaLR -14 436 301 279 0 0 0 chr11 15276736 15276767 -133506705 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 24 32 0 0 chr11 15276859 15276890 -133506582 + AT_rich Low_complexity Low_complexity 1 31 0 252 245 0 0 chr11 15277135 15277184 -133506288 - L2 LINE L2 -16 3256 3208 753 190 16 174 chr11 15277652 15277968 -133505504 - MLT1A1 LTR MaLR -2 363 98 16088 114 23 10 chr11 15277968 15280335 -133503137 - Tigger1 DNA MER2_type 0 2418 21 394 139 38 25 chr11 15280333 15280412 -133503060 - MLT1A1 LTR MaLR -348 80 1 * 267 207 284 9 chr11 15280674 15280790 -133502682 - MIR SINE MIR -65 197 50 397 279 206 20 chr11 15281476 15281680 -133501792 - MIR SINE MIR -6 256 15 1703 179 26 19 chr11 15282484 15282792 -133500680 - AluJo SINE Alu -2 310 1 638 188 87 7 chr11 15282830 15282968 -133500504 + MIR SINE MIR 104 252 -10 196 229 0 0 chr11 15283855 15283903 -133499569 + L2 LINE L2 2712 2759 -555 209 271 60 60 chr11 15284011 15284177 -133499295 + L2 LINE L2 2918 3083 -189 596 26 65 0 chr11 15284730 15284807 -133498665 - L1PA5 LINE L1 -8 6146 6065 502 313 102 24 chr11 15285284 15285667 -133497805 - L2 LINE L2 -337 2977 2565 291 274 27 0 chr11 15285964 15286037 -133497435 - LTR67 LTR ERVL -386 171 97 238 193 121 0 chr11 15286158 15286241 -133497231 - MIR SINE MIR -60 202 110 247 269 183 86 chr11 15287064 15287261 -133496211 - MIR SINE MIR -27 235 20 378 222 0 12 chr11 15287975 15288056 -133495416 + MIR SINE MIR 183 262 0 275 241 135 15 chr11 15289342 15289475 -133493997 - MIR SINE MIR 0 262 114 287 308 154 8 chr11 15289503 15289633 -133493839 - L2 LINE L2 -2 3270 3122 883 284 135 18 chr11 15290099 15290483 -133492989 - MLT1L LTR MaLR -8 607 179 494 170 47 28 chr11 15290634 15290740 -133492732 + MER53 DNA DNA 1 108 -81 408 292 71 13 chr11 15292748 15292902 -133490570 + MIR SINE MIR 13 175 -87 1406 134 124 72 chr11 15293006 15293296 -133490176 + MER1B DNA MER1_type 35 339 0 1047 288 86 10 chr11 15294011 15294268 -133489204 - LTR16A LTR ERVL -1 449 146 1000 216 138 27 chr11 15294268 15294601 -133488871 + MER93b LTR ERV1 1 370 -3 1047 288 86 10 chr11 15294601 15294760 -133488712 - LTR16A LTR ERVL -304 146 1 221 286 43 0 chr11 15294760 15294830 -133488642 - MIR SINE MIR -76 132 60 236 327 0 36 chr11 15294960 15295070 -133488402 - L2 LINE L2 -9 3263 3158 336 238 29 9 chr11 15295643 15295748 -133487724 - MIR3 SINE MIR -3 205 99 198 209 0 0 chr11 15296095 15296138 -133487334 + L2 LINE L2 3271 3313 0 516 228 152 24 chr11 15296502 15296685 -133486787 + MIR3 SINE MIR 2 205 -3 193 377 50 2 chr11 15297050 15297174 -133486298 + L2 LINE L2 2850 2976 -296 267 354 44 0 chr11 15297345 15297458 -133486014 - L2 LINE L2 -3 3310 3193 454 277 183 22 chr11 15298305 15298529 -133484943 + MIR SINE MIR 3 262 0 349 283 10 30 chr11 15298514 15298613 -133484859 + MIR SINE MIR 57 153 -109 * 190 250 161 36 chr11 15299844 15299956 -133483516 + L2 LINE L2 2376 2501 -813 327 257 108 20 chr11 15300316 15300464 -133483008 + L2 LINE L2 2924 3084 -188 500 286 148 0 chr11 15300515 15300704 -133482768 + MIR SINE MIR 11 227 -35 189 0 0 0 chr11 15300766 15300787 -133482685 + (T)n Simple_repeat Simple_repeat 1 21 0 231 279 59 0 chr11 15300805 15300873 -133482599 + L2 LINE L2 3199 3270 -43 775 336 4 0 chr11 15301522 15301781 -133481691 + MIR SINE MIR 2 261 -1 240 287 92 73 chr11 15301971 15302243 -133481229 - L2 LINE L2 -77 3195 2919 240 320 16 8 chr11 15302308 15302430 -133481042 - MIR3 SINE MIR -72 136 14 286 259 265 16 chr11 15302749 15302938 -133480534 + MIR SINE MIR 14 249 -13 1015 289 33 43 chr11 15304072 15304632 -133478840 + L2 LINE L2 2760 3311 -2 232 297 45 0 chr11 15305001 15305112 -133478360 - L1MEc LINE L1 -4739 1657 1542 363 295 80 74 chr11 15305233 15305482 -133477990 - HAL1b LINE L1 -995 353 100 2073 129 16 13 chr11 15305482 15305792 -133477680 - AluY SINE Alu 0 311 1 363 295 80 74 chr11 15305792 15305881 -133477591 - HAL1b LINE L1 -1248 100 13 2071 122 116 3 chr11 15306625 15306952 -133476520 + THE1B LTR MaLR 1 364 0 683 259 5 11 chr11 15307287 15307472 -133476000 - MIR SINE MIR -58 204 21 186 167 0 48 chr11 15307889 15307931 -133475541 + L2 LINE L2 3180 3219 -94 196 243 215 28 chr11 15308600 15308707 -133474765 - L2 LINE L2 -5 3308 3182 397 314 186 0 chr11 15308731 15308941 -133474531 + MIR SINE MIR 14 262 0 21 0 0 0 chr11 15308946 15308967 -133474505 + AT_rich Low_complexity Low_complexity 1 21 0 1660 137 0 80 chr11 15309373 15309687 -133473785 - AluJo SINE Alu -23 289 1 2373 100 15 6 chr11 15310002 15310355 -133473117 - L1PA10 LINE L1 0 6168 5823 467 282 25 6 chr11 15310464 15310627 -133472845 - MIR SINE MIR -6 256 91 836 211 22 26 chr11 15310627 15310855 -133472617 + L1ME3A LINE L1 5944 6170 0 200 250 0 0 chr11 15310871 15310915 -133472557 - MIR SINE MIR -158 104 61 1571 102 4 35 chr11 15311421 15311676 -133471796 - AluSg/x SINE Alu 0 312 78 3221 175 8 19 chr11 15311676 15311837 -133471635 - L1MD3 LINE L1 -27 7968 7807 1491 203 81 9 chr11 15311837 15312158 -133471314 + MER2 DNA MER2_type 1 344 0 3221 175 8 19 chr11 15312158 15312618 -133470854 - L1MD3 LINE L1 -188 7807 7354 278 332 19 42 chr11 15314493 15314707 -133468765 - L2 LINE L2 -228 3044 2836 375 314 66 40 chr11 15314954 15315228 -133468244 + L1MC4a LINE L1 5679 5959 -1849 228 228 0 0 chr11 15315506 15315563 -133467909 + (TATATG)n Simple_repeat Simple_repeat 6 62 0 958 282 41 43 chr11 15315905 15316461 -133467011 + L2 LINE L2 2759 3311 -2 336 230 108 40 chr11 15316942 15317090 -133466382 - L1ME4a LINE L1 -1 6120 5963 553 163 0 0 chr11 15317283 15317369 -133466103 - FLAM SINE Alu -18 125 40 362 211 67 58 chr11 15318135 15318239 -133465233 - MIR SINE MIR -10 252 148 729 258 72 0 chr11 15318253 15318447 -133465025 + MIR SINE MIR 13 220 -42 308 348 22 22 chr11 15318464 15318599 -133464873 - MIR SINE MIR -112 150 16 216 376 0 17 chr11 15319406 15319584 -133463888 + (CA)n Simple_repeat Simple_repeat 2 176 0 467 252 16 0 chr11 15320513 15320640 -133462832 - MIR3 SINE MIR -15 193 65 288 278 123 49 chr11 15320956 15321162 -133462310 + MIR SINE MIR 18 256 -6 2236 84 0 7 chr11 15321879 15322204 -133461268 + AluY SINE Alu 1 323 0 278 227 40 27 chr11 15323202 15323277 -133460195 + L2 LINE L2 3204 3279 -34 3672 222 99 44 chr11 15324709 15325093 -133458379 + Charlie2a DNA MER1_type 1 363 -2499 2324 108 0 19 chr11 15325093 15325409 -133458063 + AluSp SINE Alu 1 310 -3 3672 222 99 44 chr11 15325409 15325462 -133458010 + Charlie2a DNA MER1_type 363 412 -2450 246 62 0 0 chr11 15325462 15325494 -133457978 + (TG)n Simple_repeat Simple_repeat 2 33 0 3672 222 99 44 chr11 15325494 15326418 -133457054 + Charlie2a DNA MER1_type 412 1284 -1578 2298 113 0 0 chr11 15326418 15326719 -133456753 - AluSc SINE Alu -6 303 3 3672 222 99 44 chr11 15326719 15327974 -133455498 + Charlie2a DNA MER1_type 1284 2846 -16 2032 228 41 37 chr11 15328924 15329412 -133454060 - MLT1H1 LTR MaLR -65 490 1 504 241 373 0 chr11 15329966 15330202 -133453270 - LTR16B LTR ERVL -67 397 74 330 184 195 0 chr11 15330464 15330551 -133452921 + MIR3 SINE MIR 86 189 -19 561 207 0 27 chr11 15331391 15331553 -133451919 - FLAM_A SINE Alu 0 166 8 248 157 20 0 chr11 15331561 15331612 -133451860 - MIR SINE MIR -108 154 103 2634 30 3 7 chr11 15333006 15333307 -133450165 - AluY SINE Alu -11 300 1 342 274 98 0 chr11 15334525 15334627 -133448845 + L2 LINE L2 3155 3266 -6 407 291 56 28 chr11 15334977 15335156 -133448316 - MIR SINE MIR -70 192 9 534 220 23 0 chr11 15335158 15335290 -133448182 - MER69 DNA AcHobo -1 2525 2391 4819 38 5 3 chr11 15335323 15335903 -133447569 - L1PA5 LINE L1 -3 6151 5571 536 279 25 12 chr11 15335903 15336064 -133447408 - MER69 DNA AcHobo -844 382 220 340 306 53 41 chr11 15336361 15336531 -133446941 + MER5A DNA MER1_type 17 188 -1 372 284 135 45 chr11 15336620 15336842 -133446630 - MIR SINE MIR -3 259 18 476 228 188 0 chr11 15336906 15337055 -133446417 - MER5B DNA MER1_type 0 178 2 271 312 104 29 chr11 15337740 15337913 -133445559 + MIR3 SINE MIR 8 193 -15 303 298 63 13 chr11 15338240 15338398 -133445074 - MIR SINE MIR -1 261 96 705 283 106 4 chr11 15338725 15338962 -133444510 - MIR SINE MIR 0 262 2 501 306 51 19 chr11 15339039 15339255 -133444217 - MIR SINE MIR -24 238 16 216 111 0 0 chr11 15340680 15340716 -133442756 + (TA)n Simple_repeat Simple_repeat 2 37 0 261 342 171 0 chr11 15341127 15341244 -133442228 + L2 LINE L2 3136 3272 0 275 207 0 35 chr11 15341556 15341614 -133441858 + L2 LINE L2 3231 3286 -27 345 24 0 0 chr11 15342182 15342224 -133441248 + (CA)n Simple_repeat Simple_repeat 1 42 0 202 286 13 39 chr11 15342248 15342325 -133441147 + MIR SINE MIR 84 158 -104 348 302 0 0 chr11 15344103 15344199 -133439273 - MIR SINE MIR -57 151 56 317 345 9 26 chr11 15344292 15344405 -133439067 - MIR SINE MIR -58 150 40 678 269 48 0 chr11 15345009 15345195 -133438277 - MIR SINE MIR -19 243 49 186 261 0 22 chr11 15345392 15345438 -133438034 - MIR SINE MIR -1 261 217 267 254 0 45 chr11 15345578 15345645 -133437827 - MIR SINE MIR -62 146 83 741 191 30 8 chr11 15345652 15345783 -133437689 - L2 LINE L2 0 3313 3180 1526 213 37 19 chr11 15345783 15346107 -133437365 + MER58B DNA MER1_type 10 339 -2 524 274 110 38 chr11 15346149 15346386 -133437086 - MIR SINE MIR 0 262 9 497 246 0 0 chr11 15347149 15347263 -133436209 + FLAM_C SINE Alu 27 140 -3 209 258 142 71 chr11 15347345 15347500 -133435972 + MIR SINE MIR 2 167 -95 289 260 162 9 chr11 15347723 15347849 -133435623 - MIR SINE MIR -56 152 9 361 333 49 7 chr11 15348746 15348890 -133434582 + MIR SINE MIR 93 242 -20 341 261 145 29 chr11 15351235 15351373 -133432099 + MIR SINE MIR 46 199 -63 401 273 53 38 chr11 15351731 15351863 -133431609 - MIR3 SINE MIR -39 169 36 316 313 10 10 chr11 15352197 15352296 -133431176 + MIR SINE MIR 38 136 -72 468 0 0 0 chr11 15352537 15352589 -133430883 + (TG)n Simple_repeat Simple_repeat 1 52 0 2964 243 71 48 chr11 15353260 15354150 -133429322 - L1MC/D LINE L1 -704 5458 4543 1939 83 6 102 chr11 15354150 15354474 -133428998 - AluSx SINE Alu -19 293 1 2964 243 71 48 chr11 15354474 15355000 -133428472 - L1MC/D LINE L1 -1619 4543 4030 201 279 114 0 chr11 15355000 15355079 -133428393 - MIR SINE MIR -106 156 69 256 62 0 0 chr11 15355228 15355260 -133428212 + Alu SINE Alu 30 61 -238 437 92 0 0 chr11 15355260 15355325 -133428147 + Alu SINE Alu 242 306 -6 423 268 32 57 chr11 15355332 15355455 -133428017 + MER5B DNA MER1_type 59 178 0 180 221 235 15 chr11 15355501 15355569 -133427903 - L3 LINE CR1 -1126 451 369 1724 195 65 34 chr11 15356693 15357077 -133426395 + MSTD LTR MaLR 1 396 0 379 272 26 9 chr11 15357539 15357653 -133425819 + MIR SINE MIR 19 134 -74 180 328 15 15 chr11 15357651 15357718 -133425754 - L2 LINE L2 -6 3266 3200 * 226 156 22 0 chr11 15358419 15358464 -133425008 + CT-rich Low_complexity Low_complexity 1 46 0 268 274 41 0 chr11 15358513 15358586 -133424886 + L2 LINE L2 3188 3263 -9 246 284 168 0 chr11 15358938 15359033 -133424439 - MIR SINE MIR -28 234 124 323 281 156 22 chr11 15359035 15359090 -133424382 - MIR SINE MIR -86 176 130 2478 98 59 8 chr11 15359090 15359447 -133424025 - THE1C LTR MaLR 0 375 1 323 281 156 22 chr11 15359447 15359526 -133423946 - MIR SINE MIR -132 130 24 1246 296 54 18 chr11 15359816 15360374 -133423098 + L1ME3A LINE L1 5374 5951 -219 201 74 0 0 chr11 15360604 15360631 -133422841 + (TA)n Simple_repeat Simple_repeat 1 27 0 329 333 45 0 chr11 15361116 15361293 -133422179 - MER5A DNA MER1_type -1 188 4 856 261 39 39 chr11 15362542 15362799 -133420673 + MIR SINE MIR 2 258 -4 329 269 280 5 chr11 15363014 15363200 -133420272 - MIR SINE MIR -6 256 20 255 306 0 0 chr11 15364947 15365009 -133418463 - MIR SINE MIR -66 142 81 485 225 108 96 chr11 15365030 15365279 -133418193 - MER102b DNA MER1_type 0 341 90 486 301 78 31 chr11 15366047 15366240 -133417232 + MIR SINE MIR 20 221 -41 775 336 72 24 chr11 15367107 15367482 -133415990 + L2 LINE L2 2921 3313 0 356 222 114 66 chr11 15367495 15367662 -133415810 + MIR SINE MIR 45 219 -43 196 321 125 18 chr11 15369086 15369198 -133414274 - MIR SINE MIR -86 176 53 412 360 54 9 chr11 15369281 15369503 -133413969 + MIR SINE MIR 31 262 0 608 303 61 14 chr11 15369940 15370175 -133413297 + MIR SINE MIR 8 250 -12 185 143 0 0 chr11 15370251 15370279 -133413193 + MIR SINE MIR 122 149 -113 828 251 28 24 chr11 15371455 15371666 -133411806 + MIR SINE MIR 5 216 -46 2720 137 31 21 chr11 15371799 15371840 -133411632 - MSTA LTR MaLR 0 428 389 1478 186 18 14 chr11 15371840 15371948 -133411524 + AluJb SINE Alu 24 130 -182 654 35 53 0 chr11 15371948 15372062 -133411410 + (TA)n Simple_repeat Simple_repeat 1 120 0 1478 186 18 14 chr11 15372062 15372232 -133411240 + AluJb SINE Alu 130 303 -9 2720 137 31 21 chr11 15372232 15372614 -133410858 - MSTA LTR MaLR -39 389 1 1636 106 18 0 chr11 15373318 15373544 -133409928 + MER30 DNA MER1_type 1 230 0 674 209 0 0 chr11 15374440 15374579 -133408893 - FLAM_A SINE Alu 0 139 1 2262 208 65 9 chr11 15374604 15375065 -133408407 + MLT1D LTR MaLR 19 505 0 274 302 151 0 chr11 15375065 15375171 -133408301 - MIR SINE MIR -139 123 2 337 53 18 35 chr11 15375716 15375773 -133407699 + (TTCC)n Simple_repeat Simple_repeat 4 59 0 27 29 0 0 chr11 15376652 15376686 -133406786 + AT_rich Low_complexity Low_complexity 1 34 0 2256 92 3 0 chr11 15377795 15378100 -133405372 + AluSx SINE Alu 1 306 -6 244 278 45 68 chr11 15378186 15378362 -133405110 - L2 LINE L2 -98 3215 3044 384 273 56 28 chr11 15379122 15379265 -133404207 - L2 LINE L2 -10 3262 3116 661 213 255 5 chr11 15379306 15379494 -133403978 + MIR SINE MIR 7 241 -21 338 240 31 0 chr11 15379516 15379612 -133403860 - LTR33 LTR ERVL -20 501 403 485 254 158 46 chr11 15379715 15379975 -133403497 - MER102a DNA MER1_type -4 326 38 512 310 80 11 chr11 15380510 15380697 -133402775 + MIR SINE MIR 48 247 -15 418 253 11 0 chr11 15381359 15381533 -133401939 + (TTCA)n Simple_repeat Simple_repeat 3 178 0 440 299 42 7 chr11 15381554 15381698 -133401774 - L2 LINE L2 0 3313 3165 241 296 22 82 chr11 15382620 15382755 -133400717 + MIR SINE MIR 80 206 -56 217 317 98 12 chr11 15383441 15383523 -133399949 + MIR SINE MIR 17 105 -103 440 248 9 18 chr11 15383530 15383639 -133399833 - L2 LINE L2 0 3313 3206 1651 207 64 24 chr11 15383671 15384125 -133399347 - Charlie4a DNA MER1_type -7 501 30 268 292 79 0 chr11 15384299 15384388 -133399084 + L3 LINE CR1 1207 1302 -275 257 324 16 22 chr11 15385700 15385876 -133397596 + CT-rich Low_complexity Low_complexity 1 174 0 310 269 115 60 chr11 15385880 15386062 -133397410 - L1MDa LINE L1 -5119 1421 1230 341 324 37 0 chr11 15386630 15386738 -133396734 + MIR SINE MIR 81 192 -70 547 254 42 88 chr11 15387016 15387276 -133396196 - L2 LINE L2 0 3272 3025 277 116 0 0 chr11 15387332 15387375 -133396097 + tRNA-Cys-TGC tRNA tRNA 1 43 -32 824 183 0 144 chr11 15388860 15389068 -133394404 - MER63A DNA MER1_type 0 210 33 419 266 112 51 chr11 15389255 15389469 -133394003 - MIR SINE MIR -31 231 5 243 294 44 66 chr11 15389588 15389724 -133393748 - MIR3 SINE MIR -40 168 36 207 0 0 0 chr11 15389755 15389778 -133393694 + (TA)n Simple_repeat Simple_repeat 1 23 0 3287 195 23 10 chr11 15389778 15390529 -133392943 - Charlie1a DNA MER1_type -652 803 1 211 193 48 96 chr11 15390529 15390612 -133392860 - MIR3 SINE MIR -48 160 82 876 316 99 15 chr11 15390789 15391245 -133392227 - LTR33 LTR ERVL 0 521 28 437 253 21 72 chr11 15392177 15392405 -133391067 + MIR SINE MIR 3 214 -48 216 343 162 24 chr11 15392463 15392673 -133390799 - L3 LINE CR1 -23 1554 1316 495 257 83 0 chr11 15392691 15392737 -133390735 - MLT1F1 LTR MaLR -7 535 494 267 79 0 0 chr11 15392737 15392775 -133390697 + (CAA)n Simple_repeat Simple_repeat 2 39 0 495 257 83 0 chr11 15392775 15392872 -133390600 - MLT1F1 LTR MaLR -48 494 380 1311 223 18 55 chr11 15392883 15393211 -133390261 + L1MB7 LINE L1 14 329 -6213 * 4120 195 48 7 chr11 15393209 15394424 -133389048 + L1MB7 LINE L1 5421 6682 0 1670 234 43 13 chr11 15394427 15394824 -133388648 - MLT1F1 LTR MaLR -158 409 1 21 0 0 0 chr11 15395654 15395675 -133387797 + AT_rich Low_complexity Low_complexity 1 21 0 293 200 184 73 chr11 15396064 15396251 -133387221 - MIR SINE MIR -13 249 38 1089 197 86 4 chr11 15396476 15396710 -133386762 + MIR SINE MIR 5 257 -5 252 341 148 0 chr11 15396799 15396934 -133386538 - MIR3 SINE MIR -6 202 48 545 279 137 18 chr11 15396965 15397184 -133386288 - MIR SINE MIR -14 248 4 354 123 0 0 chr11 15397730 15397787 -133385685 + (TG)n Simple_repeat Simple_repeat 2 58 0 2229 101 10 0 chr11 15398513 15398809 -133384663 - AluSq SINE Alu -14 299 1 2131 172 86 32 chr11 15399524 15399967 -133383505 + MLT1C LTR MaLR 1 467 0 348 364 8 8 chr11 15401700 15401832 -133381640 - MIR SINE MIR -108 154 23 466 297 126 7 chr11 15402431 15402655 -133380817 + MIR SINE MIR 19 262 0 286 296 11 0 chr11 15403008 15403096 -133380376 + MER117 DNA MER1_type 1 89 -108 241 295 223 9 chr11 15403123 15403235 -133380237 + MIR SINE MIR 2 137 -125 260 284 157 10 chr11 15403574 15403676 -133379796 - MIR SINE MIR -123 139 23 975 288 98 61 chr11 15404477 15404677 -133378795 + L1M4 LINE L1 838 1029 -5615 318 26 0 0 chr11 15404677 15404716 -133378756 + (CA)n Simple_repeat Simple_repeat 2 40 0 975 288 98 61 chr11 15404716 15405590 -133377882 + L1M4 LINE L1 1029 1938 -4706 2265 200 48 58 chr11 15405608 15406147 -133377325 - MLT1E2 LTR MaLR -3 623 90 915 201 81 100 chr11 15406162 15406471 -133377001 - MLT1E2 LTR MaLR -234 392 90 1232 180 54 138 chr11 15406486 15406914 -133376558 - MLT1E2 LTR MaLR -234 392 1 326 305 30 18 chr11 15406938 15407102 -133376370 + L1M4 LINE L1 2004 2169 -4475 589 280 113 16 chr11 15407413 15407792 -133375680 - L1MEc LINE L1 -2582 3633 3218 640 279 106 33 chr11 15408991 15409350 -133374122 - L1MEc LINE L1 -4616 1780 1396 1807 228 34 39 chr11 15409351 15409942 -133373530 - L1MEc LINE L1 -5117 1279 692 1348 241 35 22 chr11 15409944 15410313 -133373159 - L1MEc LINE L1 -5995 401 28 758 320 40 17 chr11 15411759 15412059 -133371413 + MLT1I LTR MaLR 72 378 -31 459 278 119 7 chr11 15412263 15412414 -133371058 - MLT1J2 LTR MaLR -19 431 264 466 269 39 32 chr11 15412440 15412596 -133370876 - MLT1J1 LTR MaLR -287 159 3 644 175 0 0 chr11 15412694 15412797 -133370675 - AluSp/q SINE Alu -9 304 202 506 90 0 13 chr11 15413220 15413298 -133370174 + (TCCC)n Simple_repeat Simple_repeat 4 80 0 210 143 0 0 chr11 15413307 15413342 -133370130 + (T)n Simple_repeat Simple_repeat 1 35 0 316 306 86 105 chr11 15413958 15414262 -133369210 + L2 LINE L2 2971 3268 -4 2145 48 0 4 chr11 15414902 15415175 -133368297 - L1P LINE L1 -1015 5131 4860 236 328 0 0 chr11 15415222 15415289 -133368183 + L2 LINE L2 3186 3252 -20 624 282 59 56 chr11 15415332 15415637 -133367835 - L2 LINE L2 0 3313 3008 299 293 0 0 chr11 15415648 15415723 -133367749 - L2 LINE L2 -3 3269 3195 229 267 40 0 chr11 15415805 15415880 -133367592 + GA-rich Low_complexity Low_complexity 2 79 0 2112 196 8 6 chr11 15415886 15416249 -133367223 - MLT1A1 LTR MaLR -1 364 1 3042 196 31 19 chr11 15416249 15416831 -133366641 - MLT1A1-int LTR MaLR 0 1735 1147 2507 78 0 3 chr11 15416973 15417281 -133366191 - AluY SINE Alu -4 307 1 1109 224 0 9 chr11 15417323 15417537 -133365935 - MER20 DNA MER1_type 0 219 8 250 203 141 0 chr11 15417684 15417748 -133365724 + L2 LINE L2 3200 3272 0 611 182 191 120 chr11 15418881 15419090 -133364382 - MER58A DNA MER1_type 0 224 1 240 295 74 49 chr11 15419196 15419318 -133364154 - L2 LINE L2 -6 3266 3142 313 269 92 8 chr11 15420613 15420732 -133362740 - MIR SINE MIR -71 191 63 1128 254 121 33 chr11 15421264 15421752 -133361720 + MLT1H LTR MaLR 7 537 -12 645 233 56 70 chr11 15421817 15422032 -133361440 - MIR SINE MIR -11 251 40 374 263 119 8 chr11 15422256 15422374 -133361098 - MIR SINE MIR -108 154 24 263 292 53 26 chr11 15422481 15422594 -133360878 - L2 LINE L2 -19 3253 3138 644 216 172 30 chr11 15422835 15423131 -133360341 + L1ME4a LINE L1 5485 5822 -299 359 250 118 64 chr11 15423146 15423350 -133360122 + L1ME4a LINE L1 5859 6073 -48 24 0 0 0 chr11 15423421 15423445 -133360027 + AT_rich Low_complexity Low_complexity 1 24 0 434 308 98 13 chr11 15423673 15423897 -133359575 + MIR SINE MIR 20 262 0 565 312 7 7 chr11 15424285 15424439 -133359033 - MER117 DNA MER1_type -43 154 1 225 299 102 48 chr11 15424582 15424769 -133358703 + MER117 DNA MER1_type 1 197 0 243 200 0 0 chr11 15425097 15425142 -133358330 + L2 LINE L2 3265 3309 -4 203 341 35 12 chr11 15425814 15425899 -133357573 - L3 LINE CR1 -3 1574 1488 237 355 76 42 chr11 15426055 15426317 -133357155 - L3 LINE CR1 -222 1355 1085 207 211 0 0 chr11 15426761 15426799 -133356673 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 181 200 200 40 chr11 15426812 15426862 -133356610 - L2 LINE L2 -60 3212 3155 13725 26 3 0 chr11 15428003 15430292 -133353180 - L1PA4 LINE L1 0 6155 3862 476 262 0 34 chr11 15430593 15430742 -133352730 + L2 LINE L2 2386 2529 -785 742 295 30 13 chr11 15431555 15431860 -133351612 + L1ME3A LINE L1 5653 5962 -208 409 295 84 59 chr11 15432098 15432161 -133351311 + MLT1I LTR MaLR 80 140 -269 402 21 0 0 chr11 15432161 15432208 -133351264 + (TG)n Simple_repeat Simple_repeat 2 48 0 409 295 84 59 chr11 15432208 15432466 -133351006 + MLT1I LTR MaLR 140 409 0 218 307 27 0 chr11 15433789 15433864 -133349608 + CT-rich Low_complexity Low_complexity 3 79 0 184 155 17 17 chr11 15434710 15434768 -133348704 + (TCTCTG)n Simple_repeat Simple_repeat 3 60 0 483 230 69 141 chr11 15434790 15435005 -133348467 + L3 LINE CR1 799 1028 -549 968 245 32 12 chr11 15435005 15435258 -133348214 - MIR SINE MIR 0 262 5 483 230 69 141 chr11 15435258 15435547 -133347925 + L3 LINE CR1 1028 1267 -310 440 234 69 21 chr11 15435872 15436017 -133347455 - L1ME4a LINE L1 -15 6106 5955 337 315 124 42 chr11 15436356 15436766 -133346706 - L2 LINE L2 0 3272 2829 1439 221 25 34 chr11 15436769 15437122 -133346350 + L1ME3 LINE L1 5813 6162 0 242 286 0 0 chr11 15437153 15437209 -133346263 + MER5C DNA MER1_type 6 61 -263 190 272 54 54 chr11 15437420 15437456 -133346016 - MIR SINE MIR -122 140 105 1684 202 48 22 chr11 15437456 15437812 -133345660 + MLT1A1 LTR MaLR 1 365 0 190 272 54 54 chr11 15437812 15437867 -133345605 - MIR SINE MIR -156 106 49 348 309 45 28 chr11 15438011 15438189 -133345283 - MIR SINE MIR -1 261 81 260 291 69 80 chr11 15438740 15438915 -133344557 + MIR SINE MIR 23 195 -67 438 20 0 0 chr11 15439079 15439130 -133344342 + (TG)n Simple_repeat Simple_repeat 2 52 0 378 340 72 26 chr11 15440648 15440992 -133342480 - L2 LINE L2 -182 3090 2734 257 261 96 17 chr11 15441032 15441147 -133342325 - L1ME4a LINE L1 -23 6098 5975 205 294 0 15 chr11 15441216 15441284 -133342188 + (CA)n Simple_repeat Simple_repeat 2 68 0 1237 180 0 5 chr11 15441284 15441495 -133341977 + MER2 DNA MER2_type 1 210 -135 22 70 0 0 chr11 15441496 15441539 -133341933 + AT_rich Low_complexity Low_complexity 1 43 0 605 278 81 56 chr11 15441662 15441896 -133341576 - L1P4 LINE L1 -297 5824 5591 214 198 57 113 chr11 15441903 15442009 -133341463 - L2 LINE L2 -569 2745 2646 1827 104 43 43 chr11 15442246 15442575 -133340897 - AluY SINE Alu 0 329 1 254 305 84 0 chr11 15443589 15443684 -133339788 - L2 LINE L2 -16 3256 3154 210 315 50 120 chr11 15445131 15445331 -133338141 - L2 LINE L2 -81 3191 3006 979 219 38 0 chr11 15445332 15445542 -133337930 - MER58A DNA MER1_type -1 223 6 702 260 52 16 chr11 15445636 15445828 -133337644 - MIR SINE MIR -59 203 5 352 301 24 32 chr11 15447142 15447265 -133336207 - MIR SINE MIR -66 142 21 701 261 10 35 chr11 15447870 15448069 -133335403 - MER63A DNA MER1_type -16 194 1 429 319 33 14 chr11 15448069 15448248 -133335224 - MIR SINE MIR -64 144 4 318 354 20 14 chr11 15448349 15448496 -133334976 - MIR SINE MIR -45 217 70 288 319 50 50 chr11 15449243 15449403 -133334069 + MIR SINE MIR 62 221 -41 21 0 0 0 chr11 15449742 15449763 -133333709 + AT_rich Low_complexity Low_complexity 1 21 0 191 349 0 0 chr11 15450094 15450157 -133333315 + MIR SINE MIR 190 252 -10 312 293 103 32 chr11 15451080 15451265 -133332207 + MIR3 SINE MIR 3 191 -69 2520 61 0 23 chr11 15452398 15452708 -133330764 + AluY SINE Alu 1 303 -8 321 203 14 14 chr11 15453577 15453646 -133329826 - MIR SINE MIR -73 135 67 775 252 58 19 chr11 15453647 15453853 -133329619 + MIR SINE MIR 3 216 -46 198 103 0 0 chr11 15453902 15453931 -133329541 + (TCC)n Simple_repeat Simple_repeat 2 30 0 264 255 235 73 chr11 15454523 15454727 -133328745 + L3 LINE CR1 1328 1564 -13 319 278 183 6 chr11 15455007 15455176 -133328296 + MIR SINE MIR 21 219 -43 295 228 76 0 chr11 15455634 15455713 -133327759 + MIR SINE MIR 101 185 -77 21 57 0 0 chr11 15455823 15455858 -133327614 + AT_rich Low_complexity Low_complexity 1 35 0 532 219 0 83 chr11 15556040 15556245 -133227227 + L1MA6 LINE L1 2789 2976 -3170 * 1751 136 9 19 chr11 15556240 15556556 -133226916 + L1MA5 LINE L1 5863 6175 -125 889 170 0 0 chr11 15556556 15556691 -133226781 + AluSx SINE Alu 1 135 -177 2471 89 0 3 chr11 15556692 15557006 -133226466 + AluSq SINE Alu 1 313 0 23 0 0 0 chr11 15557006 15557029 -133226443 + AT_rich Low_complexity Low_complexity 1 23 0 800 176 39 39 chr11 15557339 15557492 -133225980 + AluSx SINE Alu 139 291 -21 818 135 7 0 chr11 15557494 15557635 -133225837 + L1MA5 LINE L1 6159 6300 0 11327 177 27 39 chr11 15557654 15558200 -133225272 + L1MA6 LINE L1 2963 3514 -2786 2398 97 0 3 chr11 15558200 15558511 -133224961 + AluSx SINE Alu 1 310 -2 11327 177 27 39 chr11 15558511 15559134 -133224338 + L1MA6 LINE L1 3514 4143 -2157 246 32 0 0 chr11 15559134 15559165 -133224307 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 11327 177 27 39 chr11 15559165 15561112 -133222360 + L1MA6 LINE L1 4143 6064 -236 312 262 29 0 chr11 15561168 15561271 -133222201 + L1M4 LINE L1 2880 2985 -3161 404 222 163 13 chr11 15561481 15561634 -133221838 + MER5B DNA MER1_type 1 176 -2 180 0 0 0 chr11 15562203 15562223 -133221249 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 789 146 0 23 chr11 15562227 15562357 -133221115 - FLAM_C SINE Alu -6 127 1 321 297 58 14 chr11 15562359 15562497 -133220975 - LTR67 LTR ERVL -40 517 374 361 304 31 70 chr11 15562887 15563114 -133220358 + L2 LINE L2 2443 2660 -654 198 71 0 0 chr11 15563289 15563317 -133220155 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 270 262 19 68 chr11 15563801 15563904 -133219568 + L2 LINE L2 2932 3029 -243 333 284 61 7 chr11 15564376 15564524 -133218948 - L1ME4a LINE L1 -1 6120 5965 506 313 17 0 chr11 15564630 15564806 -133218666 - L1ME4a LINE L1 -347 5774 5596 1673 275 10 5 chr11 15565716 15566112 -133217360 + LTR16C LTR ERVL 68 465 -26 228 399 42 0 chr11 15569102 15569270 -133214202 + MIR SINE MIR 77 251 -11 875 323 43 37 chr11 15570123 15570691 -133212781 + L2 LINE L2 2708 3282 -31 2787 10 0 3 chr11 15571181 15571487 -133211985 - AluY SINE Alu -6 305 1 308 284 10 39 chr11 15572151 15572253 -133211219 + L1ME LINE L1 5481 5579 -542 327 292 62 11 chr11 15572272 15572450 -133211022 - L1P5 LINE L1 -700 5451 5265 361 278 40 88 chr11 15573006 15573553 -133209919 - L1ME4a LINE L1 -1440 4706 4186 2451 60 13 0 chr11 15573686 15573988 -133209484 - AluY SINE Alu -5 306 1 437 123 0 49 chr11 15574176 15574257 -133209215 - AluSq/x SINE Alu -180 133 57 1287 162 0 0 chr11 15574257 15574448 -133209024 - AluSx SINE Alu -121 191 1 2878 248 61 31 chr11 15574556 15574766 -133208706 - L1M2 LINE L1 -4171 2936 2734 182 62 31 0 chr11 15574766 15574798 -133208674 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 2878 248 61 31 chr11 15574798 15576220 -133207252 - L1M2 LINE L1 -4373 2734 1292 1528 186 4 11 chr11 15576224 15576503 -133206969 - L1M2 LINE L1 -6753 277 1 395 286 55 45 chr11 15576580 15576800 -133206672 + L1ME LINE L1 5122 5343 -803 345 308 33 17 chr11 15576844 15577060 -133206412 + L1ME LINE L1 5420 5645 -525 * 348 225 81 9 chr11 15577049 15577160 -133206312 - L1MC3 LINE L1 -1757 6028 5910 323 232 109 17 chr11 15577167 15577299 -133206173 + L1ME LINE L1 5681 5823 -339 189 94 0 0 chr11 15577333 15577365 -133206107 + (A)n Simple_repeat Simple_repeat 1 32 0 26 74 0 0 chr11 15577641 15577695 -133205777 + AT_rich Low_complexity Low_complexity 1 54 0 220 267 67 44 chr11 15577702 15577792 -133205680 + MIR SINE MIR 39 130 -78 241 360 27 9 chr11 15578581 15578692 -133204780 + L3 LINE CR1 1174 1286 -291 788 316 85 36 chr11 15578771 15579315 -133204157 - L2 LINE L2 -17 3296 2729 367 302 23 0 chr11 15579466 15579595 -133203877 + L1ME LINE L1 4713 4844 -1302 251 242 98 72 chr11 15579675 15579828 -133203644 + L1ME LINE L1 5009 5165 -981 5275 171 22 23 chr11 15579831 15581295 -133202177 + L1MA7 LINE L1 4814 6287 -4 616 261 85 6 chr11 15581323 15581621 -133201851 + L1ME LINE L1 5176 5495 -669 202 268 18 18 chr11 15581621 15581677 -133201795 + GA-rich Low_complexity Low_complexity 4 59 0 284 291 131 30 chr11 15581742 15581979 -133201493 - L2 LINE L2 -338 2976 2716 446 204 0 23 chr11 15582283 15582371 -133201101 + MER81 DNA DNA 29 114 0 468 288 51 19 chr11 15582382 15582597 -133200875 + L2 LINE L2 2284 2505 -809 1508 280 138 4 chr11 15582636 15583337 -133200135 - L2 LINE L2 -78 3235 2452 427 321 24 53 chr11 15583354 15583563 -133199909 + L2 LINE L2 2550 2752 -562 297 370 11 0 chr11 15583637 15583729 -133199743 + L2 LINE L2 3180 3272 -41 708 293 4 23 chr11 15583772 15584038 -133199434 + HAL1b LINE L1 521 781 -567 315 303 48 37 chr11 15584243 15584431 -133199041 + L1ME1 LINE L1 50 239 -5880 497 267 31 69 chr11 15585206 15585566 -133197906 + L1ME1 LINE L1 890 1235 -4884 324 0 0 0 chr11 15585591 15585627 -133197845 + (CA)n Simple_repeat Simple_repeat 2 37 0 3355 233 66 18 chr11 15585661 15587368 -133196104 + L1ME1 LINE L1 1433 3181 -2948 1962 218 53 81 chr11 15587361 15588615 -133194857 + L1ME1 LINE L1 4660 5882 -265 * 258 259 50 13 chr11 15588627 15588729 -133194743 + L1ME1 LINE L1 5959 6066 -81 2179 175 3 3 chr11 15588774 15589139 -133194333 - MLT1A1 LTR MaLR 0 365 1 2471 265 32 23 chr11 15589162 15589467 -133194005 + L1ME2 LINE L1 3049 3350 -2796 2119 112 0 10 chr11 15589467 15589761 -133193711 - AluSx SINE Alu -21 291 1 2471 265 32 23 chr11 15589761 15590399 -133193073 + L1ME2 LINE L1 3350 4000 -2146 1863 257 9 61 chr11 15590394 15591081 -133192391 + L1ME2 LINE L1 5504 6154 -10 * 395 231 66 28 chr11 15591091 15591273 -133192199 + L1M4 LINE L1 2316 2504 -3642 810 201 18 12 chr11 15591585 15591749 -133191723 + FAM SINE Alu 10 174 -11 21 0 0 0 chr11 15591851 15591872 -133191600 + AT_rich Low_complexity Low_complexity 1 21 0 243 244 61 0 chr11 15591888 15591970 -133191502 + L1ME LINE L1 5693 5779 -342 2183 38 0 0 chr11 15592878 15593139 -133190333 + L1PA5 LINE L1 5894 6154 0 342 0 0 0 chr11 15593155 15593193 -133190279 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 2410 87 0 13 chr11 15593284 15593595 -133189877 + AluSq SINE Alu 1 307 -6 490 256 29 7 chr11 15594881 15595018 -133188454 - MIR SINE MIR -109 153 14 546 274 91 20 chr11 15595358 15595555 -133187917 + L2 LINE L2 2766 2976 -338 382 276 178 18 chr11 15595698 15595861 -133187611 + L3 LINE CR1 1315 1503 -74 392 101 32 9 chr11 15595876 15595953 -133187519 + L1P4 LINE L1 5651 5726 -429 254 277 24 12 chr11 15596411 15596494 -133186978 + L2 LINE L2 3226 3309 -4 5360 129 38 8 chr11 15596652 15597625 -133185847 + L1PA16 LINE L1 5167 6166 0 221 344 57 25 chr11 15598650 15598772 -133184700 - L2 LINE L2 -212 3060 2935 752 306 70 57 chr11 15598804 15599054 -133184418 + MLT1K LTR MaLR 27 285 -303 441 50 0 0 chr11 15599054 15599114 -133184358 + (TG)n Simple_repeat Simple_repeat 1 60 0 752 306 70 57 chr11 15599114 15599248 -133184224 + MLT1K LTR MaLR 285 416 -172 243 278 67 0 chr11 15599479 15599569 -133183903 - MIR SINE MIR -58 150 55 24 0 0 0 chr11 15599915 15599939 -133183533 + AT_rich Low_complexity Low_complexity 1 24 0 805 291 38 24 chr11 15600991 15601404 -133182068 + LTR33 LTR ERVL 30 500 -21 761 167 0 0 chr11 15602197 15602311 -133181161 + Tigger4(Zombi) DNA MER2_type 7 120 -2611 * 1057 136 47 70 chr11 15602310 15602490 -133180982 + Tigger4(Zombi) DNA MER2_type 2523 2699 -32 1993 113 45 10 chr11 15602490 15602781 -133180691 - AluSx SINE Alu -7 305 5 1057 136 47 70 chr11 15602781 15602813 -133180659 + Tigger4(Zombi) DNA MER2_type 2699 2730 -1 1428 230 65 17 chr11 15602826 15603178 -133180294 - MLT1A2 LTR MaLR -1 373 5 1029 185 25 20 chr11 15603235 15603435 -133180037 - MLT1A1 LTR MaLR -164 201 1 323 301 0 62 chr11 15603532 15603645 -133179827 - L1 LINE L1 -2445 3701 3596 1988 136 11 3 chr11 15603814 15604101 -133179371 - AluSx SINE Alu -23 289 1 2884 152 20 24 chr11 15604102 15604311 -133179161 - L1MC3 LINE L1 -8 8195 7987 1327 194 38 115 chr11 15604311 15604702 -133178770 + MLT1A1 LTR MaLR 1 361 -4 2884 152 20 24 chr11 15604702 15605046 -133178426 - L1MC3 LINE L1 -216 7987 7644 * 5353 183 22 10 chr11 15605028 15606064 -133177408 - L1MC3 LINE L1 -1420 6783 5735 3846 213 56 36 chr11 15606059 15606204 -133177268 - L1MC3 LINE L1 -4732 1832 1691 * 2092 142 7 3 chr11 15606204 15606513 -133176959 - AluSx SINE Alu 0 312 3 3846 213 56 36 chr11 15606513 15608153 -133175319 - L1MC3 LINE L1 -4873 1691 1 433 278 120 59 chr11 15608418 15609216 -133174256 - L1 LINE L1 -2985 3161 2315 26 30 0 0 chr11 15609330 15609363 -133174109 + AT_rich Low_complexity Low_complexity 1 33 0 307 319 13 7 chr11 15609931 15610069 -133173403 - HAL1b LINE L1 -809 1611 397 502 275 93 0 chr11 15610132 15610325 -133173147 - HAL1 LINE L1 -1 2506 2296 * 725 285 71 40 chr11 15610318 15610672 -133172800 - HAL1 LINE L1 -2141 366 2 322 303 78 64 chr11 15610792 15611078 -133172394 - HAL1 LINE L1 -1187 1320 1026 1546 158 24 34 chr11 15611078 15611369 -133172103 - AluJo SINE Alu -19 293 6 322 303 78 64 chr11 15611369 15611455 -133172017 - HAL1 LINE L1 -1481 1026 943 1204 197 47 101 chr11 15611930 15612315 -133171157 + MLT1A1 LTR MaLR 1 364 -1 4184 161 15 3 chr11 15612672 15613384 -133170088 + L1MC1 LINE L1 5596 6316 -17 810 124 22 22 chr11 15613948 15614126 -133169346 + GA-rich Low_complexity Low_complexity 1 178 0 234 225 0 0 chr11 15614126 15614166 -133169306 + polypurine Low_complexity Low_complexity 2 41 0 218 320 90 22 chr11 15615544 15615722 -133167750 - MIR SINE MIR -37 225 36 4693 108 90 61 chr11 15615803 15617187 -133166285 + pTR5 LTR ERV1 742 2295 -143 284 382 164 0 chr11 15617762 15617982 -133165490 - L3 LINE CR1 -1039 538 283 286 303 42 8 chr11 15619332 15619451 -133164021 + MIR3 SINE MIR 85 207 -1 210 91 0 0 chr11 15620769 15620802 -133162670 + (T)n Simple_repeat Simple_repeat 1 33 0 201 88 0 59 chr11 15621575 15621609 -133161863 + (TTCTCC)n Simple_repeat Simple_repeat 4 35 0 217 316 42 11 chr11 15621905 15622000 -133161472 - MIR SINE MIR -74 188 91 331 209 19 19 chr11 15622284 15622389 -133161083 + CT-rich Low_complexity Low_complexity 1 105 0 227 243 0 43 chr11 15622389 15622459 -133161013 - L2 LINE L2 -17 3255 3189 2477 61 0 3 chr11 15622706 15622999 -133160473 - AluY SINE Alu -19 292 1 1687 78 13 26 chr11 15623435 15623667 -133159805 + MER30 DNA MER1_type 2 230 0 445 289 144 0 chr11 15623841 15624042 -133159430 + MIR SINE MIR 3 232 -30 228 227 34 0 chr11 15624067 15624155 -133159317 + (TAG)n Simple_repeat Simple_repeat 1 91 0 216 274 0 0 chr11 15624179 15624230 -133159242 + (TAG)n Simple_repeat Simple_repeat 3 53 0 192 279 23 70 chr11 15624581 15624667 -133158805 + L2 LINE L2 3188 3269 -3 1577 182 179 3 chr11 15625305 15625635 -133157837 + MSTD LTR MaLR 1 388 -8 218 308 20 55 chr11 15626132 15626278 -133157194 - MIR3 SINE MIR -65 143 3 231 36 0 0 chr11 15626479 15626507 -133156965 + (TG)n Simple_repeat Simple_repeat 2 29 0 185 183 17 0 chr11 15626509 15626569 -133156903 + (TA)n Simple_repeat Simple_repeat 2 62 0 21 89 0 0 chr11 15626582 15626638 -133156834 + AT_rich Low_complexity Low_complexity 1 56 0 239 355 51 0 chr11 15626681 15626819 -133156653 + MIR SINE MIR 46 190 -72 249 233 128 60 chr11 15626830 15626963 -133156509 - MLT1L LTR MaLR 0 615 474 319 266 73 94 chr11 15627019 15627211 -133156261 - MLT1J LTR MaLR -216 295 108 2363 113 132 5 chr11 15628035 15628415 -133155057 + MSTA LTR MaLR 1 428 0 199 299 46 11 chr11 15630007 15630094 -133153378 - MIR3 SINE MIR -49 159 70 370 191 36 0 chr11 15630622 15630706 -133152766 - MIR SINE MIR -109 153 67 308 256 38 69 chr11 15631070 15631192 -133152280 + MIR SINE MIR 92 209 -53 2150 123 7 0 chr11 15631192 15631485 -133151987 + AluSx SINE Alu 1 295 -17 308 256 38 69 chr11 15631485 15631522 -133151950 + MIR SINE MIR 209 246 -16 343 261 0 0 chr11 15632506 15632594 -133150878 - MIR SINE MIR -112 150 63 545 224 26 13 chr11 15632929 15633081 -133150391 - MIR SINE MIR -31 231 78 1991 81 19 99 chr11 15633171 15633494 -133149978 - AluSc SINE Alu -12 297 1 239 247 194 0 chr11 15634478 15634571 -133148901 + L2 LINE L2 3203 3313 0 277 343 37 9 chr11 15635260 15635368 -133148104 + MIR3 SINE MIR 45 155 -53 604 315 81 0 chr11 15635475 15635710 -133147762 + MIR SINE MIR 9 262 0 1458 243 102 15 chr11 15635832 15636310 -133147162 - MLT2B1 LTR ERVL 0 520 1 330 132 0 0 chr11 15636422 15636475 -133146997 + (T)n Simple_repeat Simple_repeat 1 53 0 2055 129 0 3 chr11 15636522 15636840 -133146632 + AluSx SINE Alu 1 317 0 431 255 27 40 chr11 15636886 15637035 -133146437 - MIR SINE MIR -110 152 6 225 215 25 51 chr11 15637674 15637753 -133145719 + LTR67 LTR ERVL 481 557 0 534 282 110 5 chr11 15638143 15638352 -133145120 - L2 LINE L2 -541 2773 2543 849 196 18 18 chr11 15640454 15640617 -133142855 - FRAM SINE Alu 0 166 4 317 179 64 0 chr11 15640951 15641029 -133142443 + L2 LINE L2 3190 3272 0 246 32 0 0 chr11 15641035 15641066 -133142406 + (CA)n Simple_repeat Simple_repeat 2 32 0 510 217 40 33 chr11 15641422 15641574 -133141898 + LTR67 LTR ERVL 405 557 0 21 0 0 0 chr11 15642204 15642225 -133141247 + AT_rich Low_complexity Low_complexity 1 21 0 321 316 82 23 chr11 15642559 15642730 -133140742 - MIR SINE MIR -62 200 20 236 326 21 11 chr11 15642751 15642846 -133140626 + MIR3 SINE MIR 81 176 -32 326 266 18 28 chr11 15643294 15643305 -133140167 - MIR SINE MIR -87 175 165 2298 94 3 0 chr11 15643305 15643603 -133139869 + AluY SINE Alu 1 299 -12 326 266 18 28 chr11 15643603 15643700 -133139772 - MIR SINE MIR -97 165 68 588 224 18 30 chr11 15644011 15644176 -133139296 - MIR SINE MIR -13 249 87 289 228 76 0 chr11 15644313 15644392 -133139080 + MIR SINE MIR 108 192 -70 276 296 12 0 chr11 15645387 15645468 -133138004 - L2 LINE L2 -7 3265 3184 747 236 60 0 chr11 15645560 15645742 -133137730 + L2 LINE L2 2759 2951 -363 291 274 20 20 chr11 15647176 15647278 -133136194 + L2 LINE L2 2685 2786 -528 381 218 20 20 chr11 15647360 15647461 -133136011 + MER5B DNA MER1_type 15 115 -63 343 233 68 61 chr11 15647805 15647968 -133135504 - MLT1H LTR MaLR -328 221 58 247 274 49 59 chr11 15648010 15648112 -133135360 + MIR3 SINE MIR 85 185 -23 386 289 112 7 chr11 15649024 15649176 -133134296 - MIR3 SINE MIR -26 182 15 401 228 299 11 chr11 15649188 15649372 -133134100 - LTR16A LTR ERVL -17 433 197 687 224 229 10 chr11 15650092 15650443 -133133029 - MER57B LTR ERV1 -4 399 1 540 0 0 0 chr11 15650910 15650970 -133132502 + (CA)n Simple_repeat Simple_repeat 2 61 0 188 315 10 140 chr11 15651204 15651404 -133132068 - L2 LINE L2 -107 3165 2992 470 284 99 25 chr11 15651491 15651692 -133131780 - MIR SINE MIR -27 235 20 272 270 93 83 chr11 15652175 15652379 -133131093 + MIR SINE MIR 51 256 -6 2170 106 41 0 chr11 15652827 15653119 -133130353 - AluSg SINE Alu -6 304 1 413 296 15 23 chr11 15653449 15653581 -133129891 + MIR SINE MIR 21 151 -111 210 277 48 36 chr11 15653744 15653827 -133129645 + MIR SINE MIR 169 252 -10 183 256 23 0 chr11 15654270 15654313 -133129159 + MIR SINE MIR 32 75 -133 334 287 106 68 chr11 15654539 15654776 -133128696 + L2 LINE L2 3027 3272 0 542 272 41 24 chr11 15655584 15655753 -133127719 + MIR SINE MIR 80 251 -11 368 227 0 2 chr11 15657020 15657099 -133126373 - MIR SINE MIR -93 115 38 252 0 0 0 chr11 15658603 15658631 -133124841 + (T)n Simple_repeat Simple_repeat 1 28 0 350 321 29 29 chr11 15659037 15659177 -133124295 - MIR SINE MIR -110 152 13 374 332 82 38 chr11 15659699 15660039 -133123433 + L2 LINE L2 2910 3264 -49 261 253 232 0 chr11 15660911 15661006 -133122466 + MIR SINE MIR 9 125 -137 764 254 0 0 chr11 15661021 15661194 -133122278 + MER45A DNA AcHobo 5 177 -1 449 259 28 21 chr11 15662684 15662827 -133120645 + MIR3 SINE MIR 2 145 -63 415 293 8 0 chr11 15663372 15663505 -133119967 - MIR SINE MIR -5 257 124 454 193 44 26 chr11 15663711 15663825 -133119647 + MER103 DNA DNA 40 155 -11 34 0 0 0 chr11 15663864 15663898 -133119574 + AT_rich Low_complexity Low_complexity 1 34 0 228 301 68 10 chr11 15663903 15664006 -133119466 - MIR SINE MIR -64 144 36 2532 143 10 14 chr11 15664212 15664625 -133118847 - MLT2D LTR ERVL 0 414 4 486 227 0 0 chr11 15664989 15665086 -133118386 + MER5A DNA MER1_type 9 105 -84 687 304 142 18 chr11 15665677 15666128 -133117344 + L2 LINE L2 2807 3313 0 278 320 64 8 chr11 15666128 15666253 -133117219 + L2 LINE L2 3112 3243 -29 1211 163 5 0 chr11 15666500 15666696 -133116776 + MER2 DNA MER2_type 13 209 -136 27 29 0 0 chr11 15666699 15666733 -133116739 + AT_rich Low_complexity Low_complexity 1 34 0 249 351 13 0 chr11 15669276 15669353 -133114119 - L2 LINE L2 -86 3186 3109 232 289 48 12 chr11 15669815 15669898 -133113574 + MIR SINE MIR 122 207 -55 219 280 167 15 chr11 15670623 15670755 -133112717 + MIR SINE MIR 41 192 -70 338 216 12 154 chr11 15670885 15671047 -133112425 + MIR SINE MIR 124 262 0 234 343 101 18 chr11 15672261 15672430 -133111042 + LTR16C LTR ERVL 299 481 -10 205 312 11 11 chr11 15672996 15673089 -133110383 + MIR SINE MIR 60 152 -110 272 276 92 18 chr11 15673250 15673444 -133110028 - MIR SINE MIR -54 208 2 233 296 49 0 chr11 15674457 15674538 -133108934 + L2 LINE L2 3187 3271 -1 286 246 86 102 chr11 15674861 15675048 -133108424 + MER117 DNA MER1_type 9 192 -5 350 300 63 36 chr11 15675080 15675303 -133108169 + L2 LINE L2 2617 2845 -469 343 343 41 14 chr11 15675546 15675692 -133107780 + L2 LINE L2 3123 3272 0 450 281 163 0 chr11 15676638 15676791 -133106681 - MER5A DNA MER1_type -1 188 11 251 290 20 10 chr11 15677011 15677111 -133106361 - Charlie2a DNA MER1_type 0 2862 2762 292 210 200 40 chr11 15677189 15677289 -133106183 + L2 LINE L2 3189 3304 -9 538 196 30 89 chr11 15677289 15677457 -133106015 - Charlie2a DNA MER1_type -1978 884 727 325 306 11 59 chr11 15679099 15679285 -133104187 - MIR3 SINE MIR -13 195 19 893 245 55 4 chr11 15680088 15680325 -133103147 - MIR SINE MIR 0 262 14 450 315 12 12 chr11 15680384 15680549 -133102923 - MER5A DNA MER1_type -2 187 23 568 185 65 0 chr11 15680752 15680860 -133102612 + MER94 DNA DNA 3 117 -17 1097 272 44 21 chr11 15680937 15681275 -133102197 + LTR16C LTR ERVL 126 471 -20 299 229 133 0 chr11 15681288 15681371 -133102101 + MIR SINE MIR 62 155 -107 189 171 0 0 chr11 15682763 15682798 -133100674 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1405 240 49 49 chr11 15682890 15683469 -133100003 - MLT1D LTR MaLR 0 626 1 236 322 39 15 chr11 15683577 15683782 -133099690 - L1ME3A LINE L1 -230 5940 5731 1191 304 53 15 chr11 15684409 15685086 -133098386 + L2 LINE L2 2511 3299 -14 459 252 150 0 chr11 15685130 15685257 -133098215 + MER5B DNA MER1_type 1 146 -32 227 328 33 25 chr11 15685304 15685426 -133098046 + MLT1K LTR MaLR 227 349 -239 373 173 40 40 chr11 15685610 15685685 -133097787 + MLT1K LTR MaLR 513 587 -1 180 0 0 0 chr11 15687256 15687276 -133096196 + (GGGAA)n Simple_repeat Simple_repeat 3 22 0 307 301 133 0 chr11 15688084 15688197 -133095275 + MLT1H LTR MaLR 404 531 -18 2175 112 3 13 chr11 15689264 15689568 -133093904 - AluSx SINE Alu -11 301 1 550 308 35 13 chr11 15689638 15689865 -133093607 + MIR SINE MIR 20 251 -11 307 365 86 27 chr11 15690212 15690434 -133093038 - MIR SINE MIR -6 256 22 801 264 67 103 chr11 15690527 15690753 -133092719 + MLT1J LTR MaLR 9 242 -269 1758 75 0 0 chr11 15690753 15690965 -133092507 - AluSq SINE Alu -10 303 92 801 264 67 103 chr11 15690965 15691260 -133092212 + MLT1J LTR MaLR 242 511 0 606 293 11 11 chr11 15691270 15691461 -133092011 - MIR SINE MIR -70 192 2 457 271 222 10 chr11 15692515 15692718 -133090754 + MIR SINE MIR 2 247 -15 299 275 14 60 chr11 15692931 15693030 -133090442 + MIR SINE MIR 21 124 -84 2186 137 6 3 chr11 15693079 15693400 -133090072 + MER7A DNA MER2_type 22 341 -5 897 209 47 21 chr11 15693569 15693760 -133089712 - MLT1H LTR MaLR -18 531 336 223 274 24 36 chr11 15694180 15694264 -133089208 + MIR3 SINE MIR 125 207 -1 506 278 46 33 chr11 15694321 15694472 -133089000 + L3 LINE CR1 1328 1480 -97 332 59 20 0 chr11 15694624 15694675 -133088797 + (TA)n Simple_repeat Simple_repeat 2 53 0 304 294 0 0 chr11 15695017 15695102 -133088370 + MIR SINE MIR 177 261 -1 1574 164 84 4 chr11 15695955 15696065 -133087407 + AluJo SINE Alu 1 101 -211 1010 40 40 7 chr11 15696065 15696215 -133087257 + (GAAA)n Simple_repeat Simple_repeat 2 156 0 1574 164 84 4 chr11 15696215 15696378 -133087094 + AluJo SINE Alu 101 296 -16 459 263 119 0 chr11 15697050 15697168 -133086304 + MIR SINE MIR 101 232 -30 183 80 0 0 chr11 15697177 15697202 -133086270 + (TAA)n Simple_repeat Simple_repeat 1 25 0 321 270 33 79 chr11 15697210 15697362 -133086110 + L2 LINE L2 3122 3266 -6 540 278 83 56 chr11 15698591 15698843 -133084629 - MIR SINE MIR -3 259 1 230 211 197 0 chr11 15698896 15698972 -133084500 + MIR SINE MIR 56 146 -116 244 265 0 121 chr11 15699046 15699129 -133084343 + L2 LINE L2 3168 3240 -32 198 301 133 0 chr11 15699299 15699382 -133084090 + MIR SINE MIR 32 125 -83 185 271 34 0 chr11 15700101 15700160 -133083312 - L2 LINE L2 -5 3267 3207 245 314 73 37 chr11 15700166 15700357 -133083115 + MIR SINE MIR 63 260 -2 339 257 134 89 chr11 15700487 15700970 -133082502 + L2 LINE L2 2715 3234 -38 462 263 11 0 chr11 15701167 15701262 -133082210 + MER69 DNA AcHobo 1 96 -1130 865 163 0 0 chr11 15701267 15701402 -133082070 - AluJb SINE Alu -23 289 155 355 253 22 0 chr11 15701404 15701495 -133081977 + MER69 DNA AcHobo 2434 2526 0 201 296 30 15 chr11 15701497 15701564 -133081908 + MER5A DNA MER1_type 111 188 -1 432 233 134 81 chr11 15701569 15701741 -133081731 + MER5A DNA MER1_type 9 189 0 219 299 117 80 chr11 15701759 15702023 -133081449 - L2 LINE L2 -193 3079 2806 341 287 10 0 chr11 15702806 15702907 -133080565 - MIR SINE MIR -113 149 48 360 262 49 8 chr11 15703056 15703178 -133080294 - MIR3 SINE MIR 0 208 82 332 279 0 10 chr11 15703401 15703505 -133079967 + GA-rich Low_complexity Low_complexity 4 106 0 463 116 12 12 chr11 15703505 15703591 -133079881 + (GGAA)n Simple_repeat Simple_repeat 2 87 0 895 261 9 5 chr11 15703591 15703813 -133079659 - MIR SINE MIR -9 253 31 325 304 48 72 chr11 15704049 15704256 -133079216 + MIR SINE MIR 20 221 -41 635 264 5 43 chr11 15704510 15704718 -133078754 - L2 LINE L2 0 3313 3114 256 341 52 2 chr11 15705017 15705152 -133078320 - MIR SINE MIR -63 145 14 * 370 303 167 20 chr11 15705133 15705350 -133078122 + L2 LINE L2 2745 2992 -321 183 80 0 0 chr11 15705403 15705428 -133078044 + (TTA)n Simple_repeat Simple_repeat 1 25 0 1830 155 0 4 chr11 15705435 15705713 -133077759 - AluSx SINE Alu -35 277 1 562 258 107 25 chr11 15705713 15705872 -133077600 - L1ME1 LINE L1 -10 6156 5985 705 203 95 86 chr11 15705920 15706235 -133077237 + L2 LINE L2 2996 3313 0 590 283 4 69 chr11 15706422 15706655 -133076817 - MIR SINE MIR -23 239 22 274 313 30 8 chr11 15707514 15707645 -133075827 - MIR SINE MIR -122 140 7 403 179 53 21 chr11 15708067 15708162 -133075310 - MIR SINE MIR -68 140 43 22 0 0 0 chr11 15708701 15708723 -133074749 + AT_rich Low_complexity Low_complexity 1 22 0 276 100 0 0 chr11 15708877 15708917 -133074555 + (GA)n Simple_repeat Simple_repeat 2 41 0 213 238 0 0 chr11 15709263 15709364 -133074108 + GA-rich Low_complexity Low_complexity 2 102 0 216 0 0 0 chr11 15709567 15709591 -133073881 + (CA)n Simple_repeat Simple_repeat 2 25 0 225 65 0 0 chr11 15709676 15709707 -133073765 + (CA)n Simple_repeat Simple_repeat 2 32 0 38 0 0 0 chr11 15709935 15709973 -133073499 + AT_rich Low_complexity Low_complexity 1 38 0 1797 141 53 3 chr11 15709979 15710263 -133073209 + AluJb SINE Alu 1 298 -14 511 358 4 35 chr11 15710461 15710693 -133072779 - MIR SINE MIR -10 252 28 440 317 100 6 chr11 15710703 15710883 -133072589 + MIR SINE MIR 52 248 -14 346 231 157 8 chr11 15711001 15711122 -133072350 + MIR SINE MIR 117 255 -7 264 274 99 9 chr11 15711620 15711816 -133071656 + MIR3 SINE MIR 9 221 -41 * 544 270 117 6 chr11 15711804 15711967 -133071505 + MIR SINE MIR 5 185 -77 234 270 44 88 chr11 15712141 15712278 -133071194 - L2 LINE L2 -235 3037 2907 2119 149 135 50 chr11 15712286 15712768 -133070704 - MER44D DNA MER2_type 0 605 28 920 189 77 36 chr11 15712768 15713016 -133070456 - MSTD LTR MaLR -138 258 1 468 266 68 23 chr11 15713371 15713548 -133069924 - MIR SINE MIR -72 190 6 384 316 59 20 chr11 15714689 15714841 -133068631 - MIR3 SINE MIR -14 194 37 1070 130 73 53 chr11 15715633 15715879 -133067593 + ORSL DNA AcHobo 12 262 -13 2344 206 106 17 chr11 15716379 15716513 -133066959 + L1ME3A LINE L1 5509 5630 -540 355 218 26 0 chr11 15716513 15716591 -133066881 + MER116 DNA Mariner 1 80 0 2344 206 106 17 chr11 15716591 15717059 -133066413 + L1ME3A LINE L1 5630 6165 -5 257 356 17 39 chr11 15717203 15717383 -133066089 - MIR SINE MIR -66 196 21 510 297 34 0 chr11 15718362 15718510 -133064962 + MIR3 SINE MIR 41 193 -15 225 328 228 18 chr11 15719070 15719412 -133064060 + L2 LINE L2 2564 2977 -337 332 259 98 9 chr11 15719431 15719543 -133063929 + L2 LINE L2 3192 3313 0 222 235 0 59 chr11 15719807 15719875 -133063597 + L2 LINE L2 3208 3271 -1 187 400 49 27 chr11 15719918 15720103 -133063369 + L2 LINE L2 2979 3167 -105 202 216 120 96 chr11 15720820 15720945 -133062527 + MIR SINE MIR 1 129 -79 307 265 0 48 chr11 15721453 15721536 -133061936 - L2 LINE L2 0 3313 3235 356 333 103 12 chr11 15721785 15721950 -133061522 + L3 LINE CR1 1316 1495 -82 456 320 39 26 chr11 15722472 15722625 -133060847 - L2 LINE L2 -2 3270 3116 1825 149 33 0 chr11 15723096 15723408 -133060064 + AluSx SINE Alu 1 321 0 269 254 0 0 chr11 15724561 15724620 -133058852 + MLT1I LTR MaLR 344 402 -7 210 250 0 0 chr11 15724621 15724661 -133058811 - L2 LINE L2 -23 3249 3210 681 281 201 16 chr11 15725081 15725469 -133058003 + L2 LINE L2 2233 2692 -622 263 299 122 41 chr11 15725649 15725870 -133057602 + L2 LINE L2 2952 3190 -123 2363 92 3 0 chr11 15726175 15726479 -133056993 + AluSp SINE Alu 3 307 -6 726 271 89 14 chr11 15726489 15726703 -133056769 - MIR SINE MIR -30 232 3 437 282 20 34 chr11 15726848 15726997 -133056475 + MIR3 SINE MIR 28 174 -34 1616 138 88 77 chr11 15729592 15729955 -133053517 + MLT1B LTR MaLR 5 371 -19 230 328 0 16 chr11 15730004 15730068 -133053404 + L2 LINE L2 3205 3267 -5 273 337 0 0 chr11 15731420 15731518 -133051954 + MER117 DNA MER1_type 67 164 -33 294 301 88 22 chr11 15732114 15732250 -133051222 - MIR SINE MIR -9 253 109 1217 280 47 39 chr11 15732544 15733166 -133050306 + L1ME1 LINE L1 909 1535 -5008 * 9026 252 57 21 chr11 15733162 15736904 -133046568 + L1ME1 LINE L1 1824 5700 -840 2904 244 69 10 chr11 15736953 15737777 -133045695 + L1ME1 LINE L1 5687 6559 -1 6735 245 49 30 chr11 15737777 15740310 -133043162 + L1ME2 LINE L1 3013 5591 -573 1210 226 58 16 chr11 15740308 15740617 -133042855 + L1ME2 LINE L1 5827 6148 -16 * 2580 124 13 5 chr11 15741238 15741610 -133041862 + THE1C LTR MaLR 1 375 0 219 345 56 65 chr11 15741789 15742021 -133041451 - MIR SINE MIR -23 239 10 303 308 189 16 chr11 15742112 15742297 -133041175 - MIR SINE MIR -10 252 36 2186 174 52 12 chr11 15742536 15742752 -133040720 - MSTB LTR MaLR -2 424 218 287 0 0 50 chr11 15742752 15742792 -133040680 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 5036 65 35 0 chr11 15742792 15743419 -133040053 - SVA Other Other -23 1363 715 2186 174 52 12 chr11 15743419 15743608 -133039864 - MSTB LTR MaLR -207 219 2 1922 135 24 0 chr11 15743782 15744071 -133039401 - AluSg SINE Alu -14 296 1 576 288 100 22 chr11 15744209 15744480 -133038992 + L2 LINE L2 3020 3311 -2 747 297 39 3 chr11 15744653 15745058 -133038414 + LTR33 LTR ERVL 34 475 -46 609 191 0 50 chr11 15745827 15745968 -133037504 + MIR SINE MIR 40 173 -89 905 291 95 7 chr11 15746009 15746315 -133037157 + MLT1I LTR MaLR 77 409 0 331 225 45 22 chr11 15746315 15746404 -133037068 + MIR SINE MIR 171 261 -1 2454 132 57 21 chr11 15746437 15746855 -133036617 + Tigger2a DNA MER2_type 2 434 0 1098 318 83 33 chr11 15748006 15748137 -133035335 + ERVL LTR ERVL 4628 4751 -1013 1515 242 88 11 chr11 15748137 15748604 -133034868 - MLT1D LTR MaLR 0 505 3 1098 318 83 33 chr11 15748604 15749135 -133034337 + ERVL LTR ERVL 4751 5323 -441 781 281 98 40 chr11 15749248 15749647 -133033825 + LTR16A LTR ERVL 29 450 0 2341 103 3 0 chr11 15750464 15750774 -133032698 + AluSx SINE Alu 1 311 -1 546 281 44 0 chr11 15751181 15751341 -133032131 - MIR SINE MIR -3 259 93 442 248 23 47 chr11 15751927 15752056 -133031416 - MIR SINE MIR -58 204 79 273 299 102 19 chr11 15752224 15752381 -133031091 - MIR SINE MIR -14 248 79 241 299 52 26 chr11 15752547 15752701 -133030771 - L2 LINE L2 -217 3055 2898 248 309 63 109 chr11 15753235 15753585 -133029887 - L2 LINE L2 -10 3262 2929 500 221 0 0 chr11 15753946 15754050 -133029422 - MIR SINE MIR -2 260 157 410 265 215 45 chr11 15754157 15754380 -133029092 - MIR SINE MIR 0 262 2 215 349 0 15 chr11 15755079 15755211 -133028261 + (CA)n Simple_repeat Simple_repeat 1 130 0 * 285 302 11 28 chr11 15755135 15755314 -133028158 + (CATATA)n Simple_repeat Simple_repeat 2 177 0 426 270 31 25 chr11 15755415 15755574 -133027898 + L3b LINE CR1 1244 1403 -180 22 80 0 0 chr11 15755679 15755729 -133027743 + AT_rich Low_complexity Low_complexity 1 50 0 202 174 0 43 chr11 15755937 15755983 -133027489 + L2 LINE L2 3016 3059 -213 1049 276 41 24 chr11 15756076 15756442 -133027030 + LTR16A LTR ERVL 74 443 -7 1013 269 115 33 chr11 15756482 15757252 -133026220 + L2 LINE L2 2467 3313 0 186 260 20 0 chr11 15757252 15757302 -133026170 + L2 LINE L2 3112 3162 -110 1227 168 0 0 chr11 15757626 15757823 -133025649 + MER2 DNA MER2_type 13 209 -136 27 29 0 0 chr11 15757826 15757860 -133025612 + AT_rich Low_complexity Low_complexity 1 34 0 247 296 61 10 chr11 15760355 15760453 -133023019 + L2 LINE L2 2606 2708 -606 386 238 0 0 chr11 15760504 15760588 -133022884 + MIR SINE MIR 49 132 -130 208 296 19 56 chr11 15761625 15761733 -133021739 + MIR SINE MIR 104 207 -55 529 225 0 50 chr11 15761824 15761944 -133021528 + MER81 DNA DNA 1 114 0 2243 127 22 55 chr11 15761970 15762373 -133021099 + MLT1B LTR MaLR 1 390 0 537 199 20 53 chr11 15762425 15762576 -133020896 - MIR SINE MIR -56 206 61 183 80 0 0 chr11 15762855 15762880 -133020592 + (GGGAA)n Simple_repeat Simple_repeat 3 27 0 2357 141 33 5 chr11 15762883 15763274 -133020198 + MER57A LTR ERV1 1 402 -1 252 255 0 0 chr11 15763378 15763429 -133020043 - Zaphod DNA AcHobo -1 4030 3980 1541 209 57 9 chr11 15763444 15763775 -133019697 + MLT1A1 LTR MaLR 19 365 0 323 303 8 8 chr11 15763792 15763914 -133019558 - MER115 DNA AcHobo -48 645 524 203 352 152 25 chr11 15764307 15764622 -133018850 - L2 LINE L2 -1 3271 2917 189 147 0 0 chr11 15764923 15764957 -133018515 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 1148 258 115 32 chr11 15766015 15766484 -133016988 + MLT1J LTR MaLR 1 508 -3 257 324 81 27 chr11 15766619 15766767 -133016705 - L2 LINE L2 0 3272 3117 299 279 48 10 chr11 15768011 15768115 -133015357 - MIR3 SINE MIR -19 189 82 295 280 19 28 chr11 15768996 15769103 -133014369 - L1M3d LINE L1 -5780 111 6 771 165 0 15 chr11 15769128 15769261 -133014211 + FLAM_C SINE Alu 2 132 -1 2308 98 0 10 chr11 15769404 15769701 -133013771 + AluSx SINE Alu 1 294 -18 1195 159 57 18 chr11 15770000 15770226 -133013246 - MLT1A1 LTR MaLR -5 360 126 1322 190 261 8 chr11 15770226 15770550 -133012922 + MSTB LTR MaLR 1 434 -23 180 0 0 0 chr11 15770668 15770688 -133012784 + (T)n Simple_repeat Simple_repeat 1 20 0 2263 83 17 0 chr11 15770734 15771023 -133012449 - AluY SINE Alu -17 294 1 218 246 16 16 chr11 15771447 15771508 -133011964 - L2 LINE L2 -22 3291 3231 201 346 13 0 chr11 15771935 15772013 -133011459 + MIR SINE MIR 183 261 -1 265 302 62 10 chr11 15772306 15772402 -133011070 - L2 LINE L2 -3 3269 3169 269 324 0 29 chr11 15772708 15772810 -133010662 + MLT1H LTR MaLR 162 260 -289 342 264 169 20 chr11 15775334 15775535 -133007937 - L3 LINE CR1 -4 1573 1343 515 274 53 32 chr11 15776958 15777148 -133006324 - L3 LINE CR1 -61 1516 1323 1079 258 69 52 chr11 15777580 15778239 -133005233 + L2 LINE L2 2649 3313 0 25 0 0 0 chr11 15778408 15778433 -133005039 + AT_rich Low_complexity Low_complexity 1 25 0 363 254 0 84 chr11 15778776 15778805 -133004667 + MIR SINE MIR 108 138 -124 1126 174 92 132 chr11 15778805 15779185 -133004287 - MLT1A1 LTR MaLR 0 365 1 363 254 0 84 chr11 15779185 15779297 -133004175 + MIR SINE MIR 138 237 -25 286 159 16 48 chr11 15779673 15779736 -133003736 + L2 LINE L2 3189 3249 -64 1094 285 117 3 chr11 15779859 15780217 -133003255 - LTR16A LTR ERVL 0 450 52 25 51 0 0 chr11 15780680 15780719 -133002753 + AT_rich Low_complexity Low_complexity 1 39 0 243 191 0 0 chr11 15781337 15781384 -133002088 + MIR SINE MIR 105 151 -111 231 362 91 19 chr11 15781521 15781786 -133001686 - L2 LINE L2 -351 2963 2680 207 246 0 0 chr11 15781868 15781886 -133001586 + (TTAG)n Simple_repeat Simple_repeat 4 21 -39 2242 172 32 3 chr11 15781886 15782263 -133001209 - MLT1B LTR MaLR -2 388 1 207 246 0 0 chr11 15782263 15782301 -133001171 + (TTAG)n Simple_repeat Simple_repeat 20 60 0 228 300 43 0 chr11 15782396 15782466 -133001006 + L2 LINE L2 3196 3268 -4 231 352 72 0 chr11 15782623 15782748 -133000724 - L3 LINE CR1 -53 1524 1391 377 306 55 47 chr11 15782762 15783017 -133000455 - MER102a DNA MER1_type -1 329 73 241 420 46 0 chr11 15783405 15783536 -132999936 + L2 LINE L2 3134 3270 -2 527 301 61 14 chr11 15783546 15783759 -132999713 - L3 LINE CR1 -274 1303 1081 395 312 48 32 chr11 15783821 15784007 -132999465 - MIR SINE MIR -67 195 7 21 0 0 0 chr11 15784430 15784451 -132999021 + AT_rich Low_complexity Low_complexity 1 21 0 373 320 0 0 chr11 15785563 15785691 -132997781 - L2 LINE L2 0 3313 3186 313 342 19 0 chr11 15786109 15786264 -132997208 + MER103 DNA DNA 3 160 -6 258 293 98 8 chr11 15786330 15786453 -132997019 - MIR3 SINE MIR -48 160 27 223 316 89 0 chr11 15786840 15786919 -132996553 - L3 LINE CR1 -98 1479 1394 258 280 140 32 chr11 15787972 15788129 -132995343 - MIR SINE MIR -15 193 20 279 265 12 12 chr11 15788470 15788553 -132994919 - MLT2E LTR ERVL -2 626 544 275 186 0 29 chr11 15789004 15789074 -132994398 + L1MA10 LINE L1 6266 6333 -1 251 254 70 0 chr11 15790313 15790384 -132993088 - LTR16C LTR ERVL -93 398 323 * 588 308 150 16 chr11 15790364 15790750 -132992722 + MLT1K LTR MaLR 144 581 -7 251 253 0 22 chr11 15790901 15790992 -132992480 + (CATATA)n Simple_repeat Simple_repeat 5 93 0 296 404 7 7 chr11 15791958 15792099 -132991373 + L2 LINE L2 3117 3257 -15 279 161 0 0 chr11 15792123 15792179 -132991293 + (TGGA)n Simple_repeat Simple_repeat 3 58 0 336 221 90 17 chr11 15792315 15792449 -132991023 - MIR SINE MIR -68 140 46 312 317 59 0 chr11 15792959 15793060 -132990412 - L3 LINE CR1 -15 1562 1456 317 297 135 32 chr11 15793100 15793285 -132990187 + MIR SINE MIR 52 255 -7 337 338 116 27 chr11 15793285 15793578 -132989894 - L3 LINE CR1 -165 1412 1094 500 310 41 18 chr11 15795355 15795526 -132987946 + MIR SINE MIR 72 246 -16 412 317 100 69 chr11 15796302 15796630 -132986842 + L2 LINE L2 2382 2737 -577 1205 214 21 18 chr11 15796630 15796910 -132986562 - AluJo SINE Alu -31 281 1 412 317 100 69 chr11 15796910 15797159 -132986313 + L2 LINE L2 2737 2977 -337 228 286 0 14 chr11 15797377 15797447 -132986025 + GA-rich Low_complexity Low_complexity 1 69 0 356 73 36 0 chr11 15797479 15797534 -132985938 + (GGGA)n Simple_repeat Simple_repeat 2 58 0 202 222 0 0 chr11 15797542 15797578 -132985894 + T-rich Low_complexity Low_complexity 4 39 0 225 146 0 0 chr11 15797648 15797696 -132985776 + (T)n Simple_repeat Simple_repeat 1 48 0 245 125 0 21 chr11 15798361 15798409 -132985063 + (TG)n Simple_repeat Simple_repeat 1 47 0 21 0 0 0 chr11 15798644 15798665 -132984807 + AT_rich Low_complexity Low_complexity 1 21 0 613 313 31 19 chr11 15799150 15799406 -132984066 + MIR SINE MIR 2 260 -2 478 286 17 40 chr11 15799694 15799869 -132983603 + MLT1J2 LTR MaLR 264 434 -16 216 355 86 20 chr11 15800404 15800556 -132982916 - L2 LINE L2 -160 3112 2951 564 181 118 8 chr11 15801330 15801457 -132982015 + MIR SINE MIR 51 191 -71 790 289 31 13 chr11 15801491 15801719 -132981753 - MIR SINE MIR -28 234 3 2219 129 21 46 chr11 15801826 15801974 -132981498 - THE1B LTR MaLR 0 364 214 1916 127 40 119 chr11 15801974 15802369 -132981103 - THE1B LTR MaLR 0 364 1 2219 129 21 46 chr11 15802369 15802593 -132980879 - THE1B LTR MaLR -150 214 1 1871 233 106 8 chr11 15802649 15803142 -132980330 - MLT1E LTR MaLR -2 591 51 553 221 33 0 chr11 15803173 15803295 -132980177 + MER94 DNA DNA 8 133 -1 874 172 6 45 chr11 15803373 15803530 -132979942 - MER8 DNA MER2_type 0 239 89 2280 173 51 15 chr11 15804331 15804742 -132978730 + MSTB LTR MaLR 1 426 0 478 326 112 48 chr11 15805117 15805627 -132977845 - L2 LINE L2 0 3272 2734 372 286 181 0 chr11 15806198 15806331 -132977141 - MIR SINE MIR -1 261 105 582 263 38 83 chr11 15807037 15807305 -132976167 - MIR SINE MIR -4 258 4 763 137 13 72 chr11 15808972 15809058 -132974414 + Charlie4 DNA MER1_type 1818 1893 -68 882 215 280 64 chr11 15809058 15809462 -132974010 + LTR16C LTR ERVL 1 491 0 763 137 13 72 chr11 15809462 15809528 -132973944 + Charlie4 DNA MER1_type 1893 1961 0 252 208 21 0 chr11 15809553 15809613 -132973859 - MIR SINE MIR -51 157 94 210 71 0 0 chr11 15810239 15810267 -132973205 + (TAA)n Simple_repeat Simple_repeat 1 28 0 321 208 104 40 chr11 15810951 15811076 -132972396 - L1MCa LINE L1 -4203 2223 2091 275 241 52 60 chr11 15811279 15811395 -132972077 - HAL1b LINE L1 -930 418 304 443 274 18 7 chr11 15812767 15813040 -132970432 + CT-rich Low_complexity Low_complexity 1 276 0 327 228 0 38 chr11 15813068 15813310 -132970162 + C-rich Low_complexity Low_complexity 1 232 0 4248 218 58 37 chr11 15813807 15816026 -132967446 - L1MCc LINE L1 -4326 2796 3 565 250 58 31 chr11 15817069 15817293 -132966179 + L2 LINE L2 3081 3310 -3 26 30 0 0 chr11 15817351 15817384 -132966088 + AT_rich Low_complexity Low_complexity 1 33 0 801 285 55 4 chr11 15817397 15817632 -132965840 - MIR SINE MIR -14 248 2 426 273 25 50 chr11 15818426 15818587 -132964885 + MER103 DNA DNA 6 162 -4 313 282 127 42 chr11 15820056 15820269 -132963203 + MIR SINE MIR 22 252 -10 532 309 18 18 chr11 15820304 15820469 -132963003 + MIR SINE MIR 1 165 -97 376 276 20 20 chr11 15820643 15820741 -132962731 + L1MEd LINE L1 434 531 -5588 234 202 0 121 chr11 15821468 15821567 -132961905 - LTR67 LTR ERVL 0 557 471 456 242 126 146 chr11 15821579 15821693 -132961779 + L1MEd LINE L1 104 219 -5986 858 165 0 0 chr11 15821693 15821826 -132961646 - FLAM_A SINE Alu 0 133 1 456 242 126 146 chr11 15821826 15822733 -132960739 + L1MEd LINE L1 219 1105 -5100 856 196 6 6 chr11 15822858 15823021 -132960451 - FRAM SINE Alu -13 163 1 295 308 13 31 chr11 15823023 15823182 -132960290 + L1MEd LINE L1 1554 1709 -4687 2195 123 0 0 chr11 15823186 15823486 -132959986 + AluSx SINE Alu 1 300 -12 295 99 37 25 chr11 15823737 15823818 -132959654 + (TA)n Simple_repeat Simple_repeat 1 82 0 332 263 58 74 chr11 15824723 15825088 -132958384 + L1MEd LINE L1 858 1216 -4903 3464 257 92 44 chr11 15825091 15825532 -132957940 + HAL1 LINE L1 4 422 -2085 817 198 105 6 chr11 15825532 15825704 -132957768 + MER5A DNA MER1_type 1 189 0 3464 257 92 44 chr11 15825704 15825721 -132957751 + HAL1 LINE L1 422 437 -2070 1745 171 4 0 chr11 15825721 15825996 -132957476 - AluSx SINE Alu -15 297 22 3464 257 92 44 chr11 15825996 15827021 -132956451 + HAL1 LINE L1 437 1559 -948 1043 266 91 44 chr11 15827073 15827793 -132955679 + HAL1 LINE L1 1651 2476 -31 378 269 73 59 chr11 15828589 15828875 -132954597 - LTR67 LTR ERVL -77 480 191 291 241 0 0 chr11 15829073 15829127 -132954345 + MIR SINE MIR 15 68 -194 * 710 269 137 74 chr11 15829125 15829519 -132953953 + L2 LINE L2 2895 3313 0 323 242 63 0 chr11 15829526 15829623 -132953849 + MIR SINE MIR 96 192 -63 512 328 65 5 chr11 15830762 15830972 -132952500 - MIR SINE MIR -35 227 7 246 32 0 0 chr11 15831696 15831727 -132951745 + (CA)n Simple_repeat Simple_repeat 2 32 0 813 252 14 14 chr11 15832683 15832893 -132950579 - MIR SINE MIR -1 261 52 320 374 47 26 chr11 15832916 15833106 -132950366 + L2 LINE L2 3073 3266 -6 368 368 12 6 chr11 15833168 15833339 -132950133 - MIR SINE MIR -14 248 77 441 333 80 51 chr11 15833409 15834076 -132949396 - L2 LINE L2 -171 3101 2405 186 71 0 0 chr11 15834317 15834345 -132949127 + (CA)n Simple_repeat Simple_repeat 1 28 0 324 200 0 0 chr11 15836198 15836253 -132947219 - L2 LINE L2 -8 3305 3251 203 297 9 126 chr11 15836289 15836400 -132947072 - L2 LINE L2 -15 3257 3160 515 270 29 1 chr11 15836429 15836578 -132946894 - MIR SINE MIR -65 143 20 514 269 71 39 chr11 15837673 15837855 -132945617 + MIR SINE MIR 24 211 -51 189 175 0 0 chr11 15837987 15838027 -132945445 + (TTA)n Simple_repeat Simple_repeat 2 41 0 182 271 85 0 chr11 15838327 15838386 -132945086 - L2 LINE L2 -1 3271 3208 585 155 0 42 chr11 15838435 15838577 -132944895 + (CATATA)n Simple_repeat Simple_repeat 6 141 0 291 274 36 12 chr11 15839504 15839588 -132943884 - MIR3 SINE MIR -12 196 111 182 333 23 46 chr11 15839616 15839703 -132943769 + L2 LINE L2 3178 3262 -10 376 262 107 16 chr11 15840009 15840131 -132943341 + L2 LINE L2 3181 3313 0 556 262 71 0 chr11 15840155 15840323 -132943149 + MER117 DNA MER1_type 14 193 -4 306 315 91 30 chr11 15841551 15841716 -132941756 + MIR SINE MIR 2 177 -31 210 333 18 45 chr11 15842009 15842120 -132941352 - MIR SINE MIR -68 140 44 561 262 0 20 chr11 15842523 15842672 -132940800 - L2 LINE L2 -1 3312 3167 1298 231 16 80 chr11 15843022 15843460 -132940012 + MLT1C LTR MaLR 1 410 -57 197 229 62 0 chr11 15843475 15843523 -132939949 - L2 LINE L2 -254 3059 3009 454 228 197 21 chr11 15843658 15843851 -132939621 + MIR SINE MIR 35 261 -1 362 263 35 76 chr11 15844529 15844700 -132938772 - L2 LINE L2 0 3313 3150 228 35 0 0 chr11 15845765 15845794 -132937678 + (GA)n Simple_repeat Simple_repeat 1 29 0 299 341 0 0 chr11 15846399 15846481 -132936991 + L3 LINE CR1 1416 1497 -80 216 262 155 12 chr11 15846704 15846788 -132936684 - MIR SINE MIR -77 131 36 642 291 49 45 chr11 15847072 15847203 -132936269 + MIR SINE MIR 18 152 -110 2275 103 3 13 chr11 15847203 15847513 -132935959 + AluSx SINE Alu 1 307 -5 642 291 49 45 chr11 15847513 15847625 -132935847 + MIR SINE MIR 152 262 0 683 290 60 11 chr11 15847779 15848247 -132935225 - LTR33 LTR ERVL -3 518 1 211 261 196 65 chr11 15849678 15849816 -132933656 + MIR SINE MIR 33 188 -74 4318 211 28 68 chr11 15850141 15850461 -132933011 + L1MC4 LINE L1 6750 7081 -961 243 0 0 0 chr11 15850461 15850488 -132932984 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 4318 211 28 68 chr11 15850488 15851485 -132931987 + L1MC4 LINE L1 7081 8015 -27 21 0 0 0 chr11 15851513 15851534 -132931938 + AT_rich Low_complexity Low_complexity 1 21 0 538 301 40 61 chr11 15851930 15852226 -132931246 - MLT1I LTR MaLR 0 409 120 202 336 14 43 chr11 15853914 15854054 -132929418 + L2 LINE L2 2376 2511 -803 1659 199 0 23 chr11 15854196 15854502 -132928970 - AluJo SINE Alu -13 299 1 342 256 137 48 chr11 15854994 15855245 -132928227 + MLT1G LTR MaLR 19 296 -294 333 140 0 0 chr11 15856397 15856454 -132927018 + (A)n Simple_repeat Simple_repeat 1 57 0 1976 144 44 0 chr11 15856985 15857283 -132926189 - AluJo SINE Alu -1 311 1 361 350 7 21 chr11 15857839 15857979 -132925493 - MIR3 SINE MIR -48 160 23 33 0 0 0 chr11 15858780 15858813 -132924659 + AT_rich Low_complexity Low_complexity 1 33 0 316 343 89 18 chr11 15858830 15858999 -132924473 - L2 LINE L2 0 3313 3133 237 305 86 62 chr11 15859106 15859152 -132924320 + MIR SINE MIR 82 125 -137 2408 170 19 12 chr11 15859152 15859575 -132923897 - MSTB LTR MaLR 0 426 1 237 305 86 62 chr11 15859575 15859656 -132923816 + MIR SINE MIR 125 212 -50 228 67 0 0 chr11 15861756 15861786 -132921686 + (CA)n Simple_repeat Simple_repeat 1 30 0 234 267 0 33 chr11 15863043 15863103 -132920369 + L3 LINE CR1 1519 1576 -1 5476 56 10 0 chr11 15863228 15863910 -132919562 - L1PA7 LINE L1 -11 6143 5455 1485 82 0 0 chr11 15863910 15864129 -132919343 + L1P LINE L1 4999 5217 -929 690 341 52 30 chr11 15865252 15865659 -132917813 - L3 LINE CR1 -482 1095 680 184 365 0 0 chr11 15865916 15865979 -132917493 - L3 LINE CR1 -1018 559 497 324 317 59 21 chr11 15866240 15866431 -132917041 - MIR SINE MIR -55 153 11 515 220 70 149 chr11 15867983 15868224 -132915248 - MER58A DNA MER1_type 0 224 3 282 281 86 39 chr11 15868601 15868729 -132914743 + MIR SINE MIR 88 221 -41 306 324 84 25 chr11 15869102 15869232 -132914240 + MIR SINE MIR 31 152 -110 1802 183 22 17 chr11 15869232 15869592 -132913880 + MLT1A1 LTR MaLR 4 365 0 306 324 84 25 chr11 15869592 15869618 -132913854 + MIR SINE MIR 152 175 -87 1688 201 28 8 chr11 15869618 15869976 -132913496 - MLT1A1 LTR MaLR 0 365 1 306 324 84 25 chr11 15869976 15870024 -132913448 + MIR SINE MIR 175 251 -11 385 279 108 0 chr11 15870514 15870625 -132912847 - L3 LINE CR1 -64 1513 1391 350 337 26 16 chr11 15870650 15870840 -132912632 - L3 LINE CR1 -802 775 584 242 317 89 0 chr11 15871300 15871394 -132912078 + MIR SINE MIR 48 146 -62 231 341 83 21 chr11 15872130 15872561 -132910911 - L1MC/D LINE L1 -2059 5749 5292 742 310 112 41 chr11 15872638 15873247 -132910225 - L1MC/D LINE L1 -1011 5135 4484 315 229 159 32 chr11 15873334 15873491 -132909981 - L1 LINE L1 -1793 4353 4177 1812 198 50 50 chr11 15873533 15874038 -132909434 - MLT1D LTR MaLR 0 505 1 341 245 123 9 chr11 15874369 15874475 -132908997 + L2 LINE L2 3192 3309 -4 258 312 25 54 chr11 15874678 15874992 -132908480 - HAL1b LINE L1 -547 801 497 228 241 52 60 chr11 15875020 15875136 -132908336 - HAL1b LINE L1 -930 418 304 249 376 0 0 chr11 15876796 15876905 -132906567 + MIR3 SINE MIR 77 185 -23 802 254 87 33 chr11 15878018 15878317 -132905155 - MLT1J2 LTR MaLR -135 315 1 251 283 181 22 chr11 15879373 15879511 -132903961 - MIR SINE MIR -6 256 97 388 248 71 18 chr11 15879955 15880068 -132903404 + MIR SINE MIR 18 136 -72 442 269 130 51 chr11 15881281 15881632 -132901840 + MLT1I LTR MaLR 68 409 0 409 257 238 20 chr11 15881819 15882021 -132901451 - MIR SINE MIR -6 256 11 557 243 45 45 chr11 15882699 15882901 -132900571 + MIR SINE MIR 48 249 -13 285 315 11 0 chr11 15882913 15883005 -132900467 + L2 LINE L2 3221 3313 0 304 331 58 69 chr11 15884799 15885059 -132898413 - L1MC/D LINE L1 -2232 5576 5320 25 31 0 0 chr11 15885253 15885285 -132898187 + AT_rich Low_complexity Low_complexity 1 32 0 296 322 11 0 chr11 15885547 15885634 -132897838 + MIR3 SINE MIR 115 202 -6 394 254 75 37 chr11 15887305 15887439 -132896033 + MIR SINE MIR 116 254 -8 468 258 39 0 chr11 15888194 15888322 -132895150 + MIR SINE MIR 120 252 -10 283 250 15 0 chr11 15888331 15888399 -132895073 + (CAT)n Simple_repeat Simple_repeat 3 71 0 298 345 112 9 chr11 15889362 15889478 -132893994 + MIR3 SINE MIR 3 130 -78 658 229 14 106 chr11 15889485 15889703 -132893769 + MIR SINE MIR 3 200 -62 426 231 0 0 chr11 15889728 15889806 -132893666 + L2 LINE L2 3191 3268 -45 233 321 44 51 chr11 15890078 15890215 -132893257 + MIR3 SINE MIR 43 178 -30 1885 139 66 0 chr11 15890442 15890730 -132892742 - AluJb SINE Alu -5 307 1 740 257 48 0 chr11 15890906 15891093 -132892379 - MER117 DNA MER1_type -1 196 1 267 321 18 4 chr11 15892084 15892180 -132891292 + MIR3 SINE MIR 94 173 -35 1087 323 45 27 chr11 15892882 15893368 -132890104 + MLT1K LTR MaLR 31 525 -63 1177 129 0 25 chr11 15893369 15893570 -132889902 + L1PB1 LINE L1 5956 6151 0 237 264 0 0 chr11 15893599 15893671 -132889801 + MLT1K LTR MaLR 517 588 0 206 227 0 171 chr11 15894046 15894134 -132889338 + MIR SINE MIR 20 92 -170 203 301 2 0 chr11 15894164 15894222 -132889250 + MIR SINE MIR 90 140 -68 * 429 324 87 49 chr11 15894221 15894507 -132888965 + L2 LINE L2 2588 2862 -410 796 261 92 4 chr11 15894507 15894745 -132888727 - MIR SINE MIR -2 260 2 429 324 87 49 chr11 15894745 15894787 -132888685 + L2 LINE L2 2862 2901 -371 1833 201 111 32 chr11 15894787 15895255 -132888217 + MLT1D LTR MaLR 1 505 0 429 324 87 49 chr11 15895255 15895421 -132888051 + L2 LINE L2 2901 3059 -213 2140 140 0 3 chr11 15895421 15895735 -132887737 - AluSq SINE Alu 0 313 1 429 324 87 49 chr11 15895735 15895915 -132887557 + L2 LINE L2 3059 3272 0 187 247 71 59 chr11 15895926 15896011 -132887461 + MIR SINE MIR 163 248 -14 291 338 54 7 chr11 15897012 15897160 -132886312 + MLT1L LTR MaLR 1 155 -460 306 0 0 0 chr11 15897160 15897194 -132886278 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 940 290 179 22 chr11 15897203 15898082 -132885390 - L2 LINE L2 -23 3290 2257 420 82 0 0 chr11 15898210 15898271 -132885201 + (TGGA)n Simple_repeat Simple_repeat 1 61 0 429 310 25 13 chr11 15898330 15898488 -132884984 + MIR3 SINE MIR 38 197 -11 288 314 57 16 chr11 15898493 15898617 -132884855 + MIR SINE MIR 19 147 -115 252 86 0 0 chr11 15898743 15898778 -132884694 + (CA)n Simple_repeat Simple_repeat 2 36 0 182 271 71 12 chr11 15898983 15899068 -132884404 + MIR SINE MIR 155 244 -18 239 200 73 0 chr11 15899920 15899975 -132883497 - MLT1I LTR MaLR 0 409 351 205 322 17 17 chr11 15900152 15900211 -132883261 + L2 LINE L2 3128 3186 -86 252 270 110 0 chr11 15900561 15900661 -132882811 - L2 LINE L2 -8 3264 3154 667 264 163 22 chr11 15900702 15900929 -132882543 - MIR SINE MIR 0 262 4 333 47 47 16 chr11 15901507 15901571 -132881901 + (TTTTG)n Simple_repeat Simple_repeat 5 70 0 631 263 95 33 chr11 15901837 15902080 -132881392 - MIR SINE MIR 0 262 5 186 118 0 0 chr11 15902286 15902320 -132881152 + (CAGA)n Simple_repeat Simple_repeat 3 36 0 213 290 11 32 chr11 15902814 15902907 -132880565 + GA-rich Low_complexity Low_complexity 2 92 0 289 208 31 62 chr11 15903147 15903243 -132880229 + L2 LINE L2 3020 3112 -160 498 316 10 10 chr11 15903370 15903563 -132879909 + MIR SINE MIR 40 232 -30 243 211 42 56 chr11 15903598 15903669 -132879803 + L2 LINE L2 3244 3313 0 227 154 0 19 chr11 15904446 15904498 -132878974 + (CA)n Simple_repeat Simple_repeat 1 51 0 197 215 31 62 chr11 15905702 15905767 -132877705 - L2 LINE L2 -1 3271 3209 224 215 0 77 chr11 15906712 15906777 -132876695 + MIR SINE MIR 16 75 -187 180 74 0 0 chr11 15906839 15906866 -132876606 + L2 LINE L2 3275 3301 -12 356 286 79 8 chr11 15907036 15907162 -132876310 - L2 LINE L2 -1 3271 3137 2244 92 0 33 chr11 15907198 15907501 -132875971 + AluSg SINE Alu 1 293 -17 339 330 73 18 chr11 15907617 15907835 -132875637 - MIR SINE MIR -13 249 20 215 250 15 0 chr11 15907979 15908047 -132875425 + (TA)n Simple_repeat Simple_repeat 1 69 0 632 271 63 27 chr11 15908121 15908453 -132875019 - L1ME4a LINE L1 -205 5916 5573 506 234 108 13 chr11 15909402 15909560 -132873912 + MIR SINE MIR 77 249 -13 393 294 112 23 chr11 15910006 15910220 -132873252 + MIR SINE MIR 19 251 -11 450 270 96 55 chr11 15910223 15910651 -132872821 - MLT1K LTR MaLR 0 588 165 212 0 0 35 chr11 15911020 15911049 -132872423 + (TTTTTA)n Simple_repeat Simple_repeat 3 30 0 1733 43 0 0 chr11 15911050 15911259 -132872213 - L1PA4 LINE L1 -3 6152 5944 223 300 0 0 chr11 15911396 15911456 -132872016 + CT-rich Low_complexity Low_complexity 3 62 0 222 345 0 27 chr11 15912065 15912175 -132871297 + CT-rich Low_complexity Low_complexity 1 107 0 274 275 46 55 chr11 15912556 15912665 -132870807 - MIR SINE MIR -70 192 85 210 192 8 77 chr11 15913049 15913056 -132870416 + (TA)n Simple_repeat Simple_repeat 2 8 -114 2069 163 21 0 chr11 15913056 15913393 -132870079 + MER2 DNA MER2_type 1 344 0 210 192 8 77 chr11 15913393 15913515 -132869957 + (TA)n Simple_repeat Simple_repeat 8 122 0 1107 185 0 5 chr11 15913656 15913845 -132869627 - MER5A DNA MER1_type -1 188 1 342 277 180 24 chr11 15914125 15914331 -132869141 - MIR SINE MIR -8 254 17 1189 84 0 11 chr11 15914755 15914805 -132868667 + (GGAA)n Simple_repeat Simple_repeat 1 225 0 1189 84 0 11 chr11 15914805 15914983 -132868489 + (GGAA)n Simple_repeat Simple_repeat 4 179 0 1332 219 93 26 chr11 15915440 15915893 -132867579 + HAL1b LINE L1 232 714 -634 215 30 0 30 chr11 15916046 15916079 -132867393 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 1217 257 87 30 chr11 15916132 15916707 -132866765 + HAL1b LINE L1 737 1344 -4 395 214 8 51 chr11 15917141 15917258 -132866214 - MIR SINE MIR -81 127 16 470 295 24 24 chr11 15917618 15917784 -132865688 + MIR3 SINE MIR 34 199 -9 502 200 90 115 chr11 15918691 15918891 -132864581 - MIR SINE MIR -54 208 14 278 49 0 24 chr11 15921189 15921230 -132862242 + (TTCC)n Simple_repeat Simple_repeat 3 42 0 2124 106 3 7 chr11 15921234 15921703 -132861769 - AluSg SINE Alu 0 468 1 302 254 36 45 chr11 15921737 15921847 -132861625 + L2 LINE L2 2945 3053 -219 218 179 0 0 chr11 15922238 15922277 -132861195 + (TATG)n Simple_repeat Simple_repeat 3 41 0 383 298 130 53 chr11 15923003 15923212 -132860260 - L1ME4a LINE L1 -279 5842 5651 2329 88 10 0 chr11 15923212 15923509 -132859963 + AluSq SINE Alu 1 300 -13 383 298 130 53 chr11 15923509 15923938 -132859534 - L1ME4a LINE L1 -470 5651 5383 776 267 42 33 chr11 15923987 15924227 -132859245 + MLT1E LTR MaLR 1 242 -351 301 294 28 9 chr11 15924514 15924623 -132858849 + L2 LINE L2 3154 3264 -8 259 312 89 25 chr11 15925212 15925369 -132858103 - MIR3 SINE MIR -29 179 13 581 228 32 25 chr11 15925771 15925929 -132857543 - MER91B DNA MER1_type -6 184 26 2315 223 82 31 chr11 15927228 15927826 -132855646 + L1ME3 LINE L1 5405 6044 -118 1212 228 4 12 chr11 15927826 15928067 -132855405 + MER8 DNA MER2_type 1 239 0 2315 223 82 31 chr11 15928067 15928149 -132855323 + L1ME3 LINE L1 6044 6120 -42 811 174 120 0 chr11 15928212 15928379 -132855093 + MER5A DNA MER1_type 3 189 0 270 265 31 20 chr11 15928379 15928477 -132854995 - MIR SINE MIR -91 171 73 1752 125 64 3 chr11 15928484 15928778 -132854694 - LTR62 LTR ERVK -1 718 407 2243 150 28 30 chr11 15928778 15929337 -132854135 - MLT2A2 LTR ERVL 0 554 1 2159 196 31 9 chr11 15929337 15929744 -132853728 - LTR62 LTR ERVK -303 416 1 425 263 38 15 chr11 15930121 15930254 -132853218 + L2 LINE L2 3178 3313 0 279 367 11 21 chr11 15930256 15930444 -132853028 - L2 LINE L2 -575 2739 2554 410 219 154 24 chr11 15930453 15930622 -132852850 + MIR SINE MIR 66 256 -6 2068 132 0 19 chr11 15930775 15931093 -132852379 - AluSx SINE Alu 0 312 1 626 264 84 16 chr11 15932712 15932865 -132850607 - MLT1K LTR MaLR 0 588 410 267 31 0 0 chr11 15932865 15932897 -132850575 + (TC)n Simple_repeat Simple_repeat 2 33 0 626 264 84 16 chr11 15932897 15932993 -132850479 - MLT1K LTR MaLR -178 410 322 207 298 117 80 chr11 15933114 15933322 -132850150 + L3 LINE CR1 1142 1341 -236 1140 225 126 18 chr11 15933322 15933656 -132849816 + MLT1A2 LTR MaLR 4 373 -1 207 298 117 80 chr11 15933656 15933833 -132849639 + L3 LINE CR1 1341 1541 -36 916 270 92 49 chr11 15934202 15934650 -132848822 - MLT1C LTR MaLR 0 467 1 2083 102 0 41 chr11 15935561 15935879 -132847593 - AluSx SINE Alu 0 306 1 237 284 0 0 chr11 15935880 15935947 -132847525 - MIR SINE MIR -112 150 84 1577 185 127 28 chr11 15938155 15938549 -132844923 - LTR40b LTR ERVL -27 435 3 206 286 18 0 chr11 15938839 15938895 -132844577 - L2 LINE L2 -2 3311 3255 1160 254 106 18 chr11 15938969 15939418 -132844054 - L2 LINE L2 -42 3271 2781 260 306 41 25 chr11 15939640 15939761 -132843711 - MIR3 SINE MIR -80 128 6 233 274 59 29 chr11 15941708 15941810 -132841662 + MLT1I LTR MaLR 39 143 -266 381 180 0 120 chr11 15941938 15942038 -132841434 + MLT1H LTR MaLR 431 518 -31 212 251 6 132 chr11 15942691 15942858 -132840614 + MIR SINE MIR 86 231 -31 549 295 24 6 chr11 15943022 15943188 -132840284 + MIR SINE MIR 20 188 -74 899 223 149 0 chr11 15945717 15945932 -132837540 - MIR SINE MIR 0 262 16 307 273 0 0 chr11 15945964 15946030 -132837442 - L2 LINE L2 -216 3056 2991 697 223 153 0 chr11 15946256 15946413 -132837059 + MER5A DNA MER1_type 9 189 0 242 236 82 73 chr11 15946436 15946546 -132836926 - MIR3 SINE MIR -89 119 9 481 287 37 7 chr11 15946892 15947028 -132836444 + MIR SINE MIR 29 168 -94 666 270 69 26 chr11 15948015 15948248 -132835224 - MIR SINE MIR -13 249 7 233 371 28 42 chr11 15948346 15948559 -132834913 - L3 LINE CR1 -437 1140 931 24 0 0 0 chr11 15948847 15948871 -132834601 + AT_rich Low_complexity Low_complexity 1 24 0 284 318 12 0 chr11 15949402 15949487 -132833985 - MIR SINE MIR -86 122 37 891 282 109 16 chr11 15949616 15950176 -132833296 - L2 LINE L2 -78 3235 2625 413 243 158 7 chr11 15950179 15950331 -132833141 - MIR SINE MIR -65 197 23 416 233 47 23 chr11 15950462 15950591 -132832881 - MIR SINE MIR -6 256 125 210 304 0 29 chr11 15951378 15951447 -132832025 - L2 LINE L2 -17 3296 3230 519 240 34 67 chr11 15952278 15952457 -132831015 - MER5B DNA MER1_type -4 174 2 386 352 56 5 chr11 15952464 15952660 -132830812 + MIR SINE MIR 36 241 -21 359 276 0 0 chr11 15953677 15953753 -132829719 + MER5C DNA MER1_type 1 76 -248 235 214 214 12 chr11 15954621 15954705 -132828767 + MIR SINE MIR 71 171 -91 201 305 268 11 chr11 15954691 15954881 -132828591 + L3 LINE CR1 1335 1573 -4 * 1225 205 114 40 chr11 15955299 15955694 -132827778 - MLT1C LTR MaLR -8 459 36 1599 186 38 51 chr11 15955749 15956119 -132827353 + MLT1A1 LTR MaLR 1 365 0 216 260 20 0 chr11 15956126 15956176 -132827296 + L2 LINE L2 3258 3308 -5 288 298 114 0 chr11 15956197 15956311 -132827161 - L2 LINE L2 -8 3264 3138 193 256 244 47 chr11 15956325 15956411 -132827061 + MIR SINE MIR 52 154 -108 943 232 55 25 chr11 15957235 15957390 -132826082 + MIR SINE MIR 1 167 -95 2236 125 27 6 chr11 15957390 15957727 -132825745 - MER2 DNA MER2_type 0 344 1 943 232 55 25 chr11 15957727 15957808 -132825664 + MIR SINE MIR 167 244 -18 289 295 67 19 chr11 15957901 15958006 -132825466 + L2 LINE L2 3162 3271 -1 1455 214 147 24 chr11 15958125 15958614 -132824858 + MLT1F1 LTR MaLR 20 567 0 494 281 78 6 chr11 15958764 15958931 -132824541 + MIR SINE MIR 46 224 -38 649 311 82 20 chr11 15959010 15959364 -132824108 - L2 LINE L2 -1 3312 2937 662 208 16 0 chr11 15959365 15959490 -132823982 - L2 LINE L2 -3 3310 3184 644 303 96 13 chr11 15959515 15959972 -132823500 - L2 LINE L2 -252 3061 2553 778 234 42 33 chr11 15960069 15960283 -132823189 + MIR SINE MIR 10 225 -37 188 244 0 0 chr11 15960249 15960290 -132823182 - L2 LINE L2 -368 2945 2905 * 2114 150 18 3 chr11 15960717 15961057 -132822415 + MER7A DNA MER2_type 4 346 0 227 274 137 10 chr11 15961157 15961259 -132822213 + LTR33 LTR ERVL 6 120 -401 277 214 22 45 chr11 15961347 15961436 -132822036 + LTR33 LTR ERVL 358 444 -77 187 324 88 29 chr11 15962175 15962277 -132821195 - L3 LINE CR1 -114 1463 1356 200 239 70 28 chr11 15962507 15962578 -132820894 - L2 LINE L2 -3 3310 3237 2222 160 22 3 chr11 15962775 15963132 -132820340 - THE1B LTR MaLR 0 364 1 320 252 72 27 chr11 15963315 15963426 -132820046 - L3 LINE CR1 -108 1469 1354 393 39 0 0 chr11 15963522 15963573 -132819899 + (TG)n Simple_repeat Simple_repeat 2 52 0 21 0 0 0 chr11 15964258 15964279 -132819193 + AT_rich Low_complexity Low_complexity 1 21 0 759 287 39 88 chr11 15964519 15965055 -132818417 + LTR67 LTR ERVL 23 532 -25 395 320 53 7 chr11 15966831 15966981 -132816491 - MIR SINE MIR -83 179 23 248 133 17 0 chr11 15967299 15967359 -132816113 + (CA)n Simple_repeat Simple_repeat 1 61 0 426 144 11 64 chr11 15967387 15967575 -132815897 + (CA)n Simple_repeat Simple_repeat 2 179 0 250 273 16 16 chr11 15967605 15967726 -132815746 + (CA)n Simple_repeat Simple_repeat 1 121 0 188 67 33 0 chr11 15967737 15967767 -132815705 + (CA)n Simple_repeat Simple_repeat 1 31 0 216 192 35 29 chr11 15967793 15967965 -132815507 + (CA)n Simple_repeat Simple_repeat 1 173 0 494 161 22 7 chr11 15968026 15968163 -132815309 + (CA)n Simple_repeat Simple_repeat 2 140 0 349 93 21 98 chr11 15968184 15968377 -132815095 + (CA)n Simple_repeat Simple_repeat 2 179 0 350 242 92 121 chr11 15968670 15968943 -132814529 - L1ME4a LINE L1 -2 6119 5855 637 290 190 42 chr11 15968947 15969531 -132813941 - L2 LINE L2 0 3313 2628 1819 202 29 69 chr11 15969541 15970060 -132813412 + MLT1D LTR MaLR 8 505 0 181 257 80 107 chr11 15970060 15970247 -132813225 - L2 LINE L2 -686 2628 2447 487 239 43 17 chr11 15970274 15970391 -132813081 + L2 LINE L2 3149 3268 -4 1649 199 100 51 chr11 15972034 15972577 -132810895 + MLT1F1 LTR MaLR 1 567 0 428 300 23 15 chr11 15972649 15972779 -132810693 + MIR3 SINE MIR 39 169 -39 186 297 27 14 chr11 15972754 15972828 -132810644 - L2 LINE L2 -838 2476 2402 * 957 183 99 15 chr11 15973835 15974037 -132809435 - MER20 DNA MER1_type 0 219 1 231 125 0 0 chr11 15974158 15974198 -132809274 + (TC)n Simple_repeat Simple_repeat 2 41 0 267 31 0 0 chr11 15974198 15974230 -132809242 + (CA)n Simple_repeat Simple_repeat 1 32 0 319 246 45 63 chr11 15974253 15974396 -132809076 - MIR3 SINE MIR -85 123 2 1079 167 63 13 chr11 15974971 15975210 -132808262 + MER44D DNA MER2_type 1 521 -88 458 207 0 0 chr11 15975240 15975327 -132808145 - Tigger5 DNA MER2_type -2235 88 2 429 198 12 0 chr11 15975332 15975418 -132808054 + MER44D DNA MER2_type 619 705 0 704 218 153 72 chr11 15975479 15975879 -132807593 - MLT1H LTR MaLR -5 544 113 2361 237 43 34 chr11 15976560 15977006 -132806466 - L1ME1 LINE L1 -5 6161 5704 1831 186 64 3 chr11 15977006 15977350 -132806122 + MLT1A1 LTR MaLR 1 365 0 2361 237 43 34 chr11 15977350 15977642 -132805830 - L1ME1 LINE L1 -462 5704 5416 287 263 25 12 chr11 15977672 15977752 -132805720 + MLT1J LTR MaLR 70 150 -361 530 303 78 76 chr11 15979218 15979653 -132803819 + L2 LINE L2 2836 3271 -1 202 229 42 0 chr11 15979659 15979707 -132803765 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 452 298 58 26 chr11 15979724 15979915 -132803557 + L2 LINE L2 3117 3313 0 444 19 0 0 chr11 15980189 15980242 -132803230 + (TATG)n Simple_repeat Simple_repeat 2 54 0 2173 119 0 0 chr11 15980242 15980528 -132802944 - AluSq SINE Alu -27 286 1 26 0 0 0 chr11 15980528 15980554 -132802918 + AT_rich Low_complexity Low_complexity 1 26 0 209 205 0 0 chr11 15981151 15981190 -132802282 + GA-rich Low_complexity Low_complexity 2 40 0 510 163 0 0 chr11 15981195 15981293 -132802179 + (TGGA)n Simple_repeat Simple_repeat 4 101 0 331 261 80 51 chr11 15981801 15981939 -132801533 - MIR SINE MIR -46 216 75 2463 64 0 3 chr11 15982606 15982902 -132800570 + AluY SINE Alu 1 295 -16 2124 134 3 10 chr11 15983410 15983708 -132799764 + AluSx SINE Alu 1 296 -16 233 293 23 58 chr11 15984440 15984614 -132798858 + L1ME4a LINE L1 5618 5785 -336 559 16 0 0 chr11 15984724 15984788 -132798684 + L1PA5 LINE L1 6078 6141 -13 21 0 0 0 chr11 15984788 15984809 -132798663 + AT_rich Low_complexity Low_complexity 1 21 0 676 286 112 40 chr11 15985623 15985972 -132797500 + MLT1J LTR MaLR 35 408 -103 333 238 168 0 chr11 15986446 15986547 -132796925 + L1ME4a LINE L1 6003 6120 -1 2339 208 35 65 chr11 15986607 15987178 -132796294 + MLT2B3 LTR ERVL 1 554 0 474 317 110 6 chr11 15987278 15987442 -132796030 - MIR SINE MIR -35 227 47 360 225 78 110 chr11 15987539 15987730 -132795742 - MLT1K LTR MaLR -6 582 398 404 296 138 28 chr11 15987777 15988024 -132795448 - MLT1K LTR MaLR -271 317 44 216 266 51 13 chr11 15988449 15988528 -132794944 - L2 LINE L2 -4 3309 3228 1370 204 77 79 chr11 15988585 15989051 -132794421 - MLT1C LTR MaLR -2 465 1 194 333 86 51 chr11 15989488 15989605 -132793867 + L2 LINE L2 3151 3271 -1 252 292 40 75 chr11 15989663 15989819 -132793653 + MIR SINE MIR 18 168 -61 410 348 34 20 chr11 15990742 15990946 -132792526 - L2 LINE L2 -160 3112 2906 302 237 126 22 chr11 15991458 15991593 -132791879 + L1MEd LINE L1 4 152 -5967 517 245 157 67 chr11 15991842 15992376 -132791096 + L1MEd LINE L1 650 1231 -4888 873 286 77 109 chr11 15992379 15992904 -132790568 + L1MEd LINE L1 1293 1777 -4533 2099 160 30 0 chr11 15992904 15993241 -132790231 + MER7A DNA MER2_type 2 346 0 873 286 77 109 chr11 15993241 15993640 -132789832 + L1MEd LINE L1 1777 2187 -4123 513 276 140 17 chr11 15993645 15994174 -132789298 + L1MEd LINE L1 2153 2746 -3383 218 116 23 0 chr11 15994235 15994278 -132789194 + (CCA)n Simple_repeat Simple_repeat 1 44 0 313 254 75 11 chr11 15994593 15994755 -132788717 + L1MEd LINE L1 3602 3767 -2362 210 333 71 30 chr11 15994784 15994883 -132788589 - MIR3 SINE MIR -36 172 70 312 250 53 0 chr11 15995076 15995152 -132788320 - MIR SINE MIR -59 203 124 315 0 0 0 chr11 15995480 15995515 -132787957 + (CA)n Simple_repeat Simple_repeat 1 35 0 203 283 38 0 chr11 15995558 15995611 -132787861 + MIR SINE MIR 21 75 -133 974 258 127 50 chr11 15995824 15996287 -132787185 - MLT1J LTR MaLR -20 465 1 332 268 151 78 chr11 15997025 15997230 -132786242 - MIR SINE MIR -12 250 31 200 286 12 24 chr11 15997497 15997581 -132785891 + L2 LINE L2 3175 3257 -56 453 284 54 45 chr11 15997599 15997821 -132785651 + L2 LINE L2 3090 3313 0 486 337 21 14 chr11 15999437 15999672 -132783800 - MIR SINE MIR -25 237 3 241 256 37 0 chr11 16002266 16002348 -132781124 - MIR SINE MIR -4 258 174 188 274 107 0 chr11 16004249 16004333 -132779139 + L2 LINE L2 2943 3035 -237 612 192 42 0 chr11 16004500 16004620 -132778852 - MER96B DNA MER1_type? -1 416 292 387 194 0 0 chr11 16004642 16004735 -132778737 + (CA)n Simple_repeat Simple_repeat 2 94 0 188 245 245 10 chr11 16004904 16005006 -132778466 - MER5B DNA MER1_type -23 155 30 225 304 106 70 chr11 16005325 16005654 -132777818 - L2 LINE L2 -49 3264 2924 191 173 19 58 chr11 16006322 16006374 -132777098 - L2 LINE L2 -26 3287 3238 255 287 148 9 chr11 16006814 16006929 -132776543 + MIR SINE MIR 23 153 -109 205 357 0 0 chr11 16007180 16007278 -132776194 + L2 LINE L2 2968 3065 -248 2166 245 128 5 chr11 16007291 16008117 -132775355 - L1M4 LINE L1 -2118 4028 3101 362 261 103 24 chr11 16008322 16008487 -132774985 - MER117 DNA MER1_type -4 193 16 971 166 118 0 chr11 16009606 16009793 -132773679 - MER3 DNA MER1_type 0 209 1 181 290 65 0 chr11 16010387 16010449 -132773023 + L2 LINE L2 3248 3313 0 663 204 96 0 chr11 16010736 16010893 -132772579 - MER5A DNA MER1_type -1 188 17 234 306 20 20 chr11 16010897 16010995 -132772477 - MIR SINE MIR -153 109 12 228 322 0 0 chr11 16012053 16012112 -132771360 - L2 LINE L2 -574 2740 2682 2741 244 90 105 chr11 16012592 16013503 -132769969 + HAL1 LINE L1 7 930 -1577 233 56 0 28 chr11 16013503 16013539 -132769933 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 2741 244 90 105 chr11 16013539 16014261 -132769211 + HAL1 LINE L1 930 1661 -846 2650 153 7 16 chr11 16014261 16014691 -132768781 - MSTB LTR MaLR 0 426 1 2741 244 90 105 chr11 16014691 16015184 -132768288 + HAL1 LINE L1 1661 2104 -403 2404 123 25 6 chr11 16015184 16015541 -132767931 + THE1B LTR MaLR 1 364 0 2741 244 90 105 chr11 16015541 16015572 -132767900 + HAL1 LINE L1 2104 2134 -373 380 256 22 122 chr11 16015593 16015863 -132767609 + HAL1 LINE L1 2265 2507 0 758 298 63 44 chr11 16016008 16016608 -132766864 + L2 LINE L2 2665 3313 0 410 219 126 33 chr11 16016620 16016771 -132766701 - MIR SINE MIR -71 191 27 584 201 26 124 chr11 16016856 16017050 -132766422 + MER5B DNA MER1_type 4 178 0 21 57 0 0 chr11 16017369 16017404 -132766068 + AT_rich Low_complexity Low_complexity 1 35 0 875 232 53 29 chr11 16017411 16017459 -132766013 - MER58A DNA MER1_type -2208 212 167 2278 119 121 16 chr11 16017459 16017846 -132765626 - MSTA LTR MaLR 0 428 1 875 232 53 29 chr11 16017846 16018004 -132765468 - MER58A DNA MER1_type -2253 167 1 195 288 144 24 chr11 16018281 16018406 -132765066 - L2 LINE L2 0 3272 3133 964 253 131 17 chr11 16018632 16019094 -132764378 + MLT1K LTR MaLR 23 575 -13 28 79 0 0 chr11 16020259 16020322 -132763150 + AT_rich Low_complexity Low_complexity 1 63 0 1494 102 9 14 chr11 16020716 16020932 -132762540 + AluSg/x SINE Alu 96 310 -2 1229 276 85 39 chr11 16021377 16021942 -132761530 + MLT1G1 LTR MaLR 5 595 0 2100 101 47 7 chr11 16022026 16022322 -132761150 - AluSp SINE Alu -5 308 1 476 185 44 109 chr11 16022333 16022570 -132760902 + MER106B DNA MER1_type 6 1055 -4 302 296 0 0 chr11 16022648 16022729 -132760743 + MIR SINE MIR 73 153 -109 219 111 28 0 chr11 16023125 16023161 -132760311 - MIR SINE MIR -11 251 215 209 343 39 0 chr11 16023262 16023364 -132760108 - L2 LINE L2 -221 3051 2946 201 376 0 0 chr11 16024198 16024283 -132759189 + MIR SINE MIR 37 121 -87 211 250 0 0 chr11 16024427 16024471 -132759001 - MER5A DNA MER1_type -137 52 9 1596 177 14 14 chr11 16025330 16025624 -132757848 - AluSx SINE Alu -18 294 1 245 305 141 0 chr11 16025857 16025985 -132757487 - L2 LINE L2 -6 3307 3162 399 291 138 0 chr11 16026574 16026777 -132756695 - MIR SINE MIR -29 233 3 255 254 17 0 chr11 16030272 16030331 -132753141 + CT-rich Low_complexity Low_complexity 1 60 0 189 0 0 0 chr11 16030346 16030367 -132753105 + (T)n Simple_repeat Simple_repeat 1 21 0 206 286 0 14 chr11 16031705 16031775 -132751697 + GA-rich Low_complexity Low_complexity 3 71 0 246 62 0 0 chr11 16033871 16033903 -132749569 + (CAA)n Simple_repeat Simple_repeat 2 33 0 486 283 70 27 chr11 16035943 16036130 -132747342 - MIR SINE MIR -17 245 51 500 272 83 28 chr11 16036622 16036802 -132746670 + MIR SINE MIR 22 211 -51 5763 249 68 96 chr11 16037126 16040322 -132743150 + L2 LINE L2 194 3309 -4 406 326 19 66 chr11 16040377 16040635 -132742837 + L3 LINE CR1 1215 1460 -117 505 223 16 171 chr11 16042123 16042428 -132741044 - MIR SINE MIR -3 259 2 506 293 68 11 chr11 16042501 16042692 -132740780 + MIR SINE MIR 46 247 -15 1470 141 24 8 chr11 16042752 16043001 -132740471 + MER2 DNA MER2_type 11 263 -82 288 151 245 0 chr11 16043065 16043118 -132740354 + MER2 DNA MER2_type 280 345 0 2797 261 111 51 chr11 16093392 16094891 -132688581 - HAL1 LINE L1 -918 1589 1 209 33 33 0 chr11 16095389 16095419 -132688053 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2204 100 0 17 chr11 16095422 16095722 -132687750 - AluSc SINE Alu -14 295 1 2173 148 9 15 chr11 16095766 16096105 -132687367 - MER1B DNA MER1_type 0 337 1 911 194 0 0 chr11 16096106 16096271 -132687201 + L1MD2 LINE L1 6166 6330 -29 558 309 99 9 chr11 16096336 16096569 -132686903 + MIR SINE MIR 3 256 -6 204 40 0 0 chr11 16096576 16096601 -132686871 + (CAT)n Simple_repeat Simple_repeat 3 27 0 301 286 43 36 chr11 16097067 16097207 -132686265 + MIR3 SINE MIR 20 160 -48 842 179 5 70 chr11 16097208 16097409 -132686063 + MER5A DNA MER1_type 2 189 0 668 217 14 7 chr11 16097429 16097567 -132685905 - MER5A DNA MER1_type -49 140 2 182 305 0 34 chr11 16097567 16097615 -132685857 + L3 LINE CR1 1527 1572 -5 207 253 0 51 chr11 16099038 16099117 -132684355 + GA-rich Low_complexity Low_complexity 1 75 0 182 37 37 0 chr11 16100149 16100176 -132683296 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 643 158 30 0 chr11 16100189 16100354 -132683118 + CT-rich Low_complexity Low_complexity 1 170 0 244 354 9 44 chr11 16101486 16101599 -132681873 - L2 LINE L2 0 3272 3164 275 281 191 0 chr11 16102394 16102483 -132680989 + L2 LINE L2 3208 3313 0 272 225 214 11 chr11 16103869 16103958 -132679514 - L2 LINE L2 0 3313 3207 261 224 0 40 chr11 16103968 16104044 -132679428 + L1MC4 LINE L1 6630 6702 -1340 858 302 27 59 chr11 16104044 16104590 -132678882 - L2 LINE L2 -139 3174 2593 765 0 0 0 chr11 16105499 16105584 -132677888 + (GGAA)n Simple_repeat Simple_repeat 4 88 0 275 173 50 173 chr11 16107926 16108065 -132675407 - MIR3 SINE MIR -6 202 81 238 340 3 3 chr11 16108254 16108362 -132675110 - MIR3 SINE MIR -53 155 47 2118 117 0 22 chr11 16108389 16108705 -132674767 - AluSp SINE Alu -1 312 4 2199 232 44 25 chr11 16109093 16109803 -132673669 + L1ME1 LINE L1 3750 4472 -1674 1062 171 34 0 chr11 16109810 16110015 -132673457 + L1MA9 LINE L1 6067 6278 -34 * 2566 243 82 14 chr11 16109998 16111493 -132671979 + L1ME1 LINE L1 4432 6035 -131 447 290 16 32 chr11 16111601 16111725 -132671747 - MIR SINE MIR -92 170 49 356 138 15 0 chr11 16111768 16111833 -132671639 + GA-rich Low_complexity Low_complexity 2 67 0 484 313 38 33 chr11 16111936 16112147 -132671325 - MIR SINE MIR -5 257 46 682 327 103 27 chr11 16112262 16112629 -132670843 - L3 LINE CR1 -5 1572 1178 22 0 0 0 chr11 16112665 16112687 -132670785 + AT_rich Low_complexity Low_complexity 1 22 0 1758 169 3 7 chr11 16116927 16117256 -132666216 + AluJb SINE Alu 1 312 0 257 313 36 0 chr11 16118222 16118305 -132665167 - MIR SINE MIR 0 262 177 185 296 0 19 chr11 16118304 16118358 -132665114 + MIR SINE MIR 90 142 -120 * 185 339 0 0 chr11 16119428 16119484 -132663988 - L2 LINE L2 -12 3260 3205 217 393 87 0 chr11 16119545 16119718 -132663754 + L2 LINE L2 3116 3303 -10 4471 183 9 2 chr11 16119973 16120879 -132662593 + L1 LINE L1 4323 5234 -912 28 48 0 0 chr11 16121436 16121478 -132661994 + AT_rich Low_complexity Low_complexity 1 42 0 304 302 119 48 chr11 16121598 16121724 -132661748 - MIR3 SINE MIR -23 185 51 414 0 0 0 chr11 16122241 16122287 -132661185 + (TA)n Simple_repeat Simple_repeat 1 46 0 353 270 61 9 chr11 16122447 16122562 -132660910 - MIR SINE MIR -6 256 136 26 0 0 0 chr11 16122596 16122622 -132660850 + AT_rich Low_complexity Low_complexity 1 26 0 5498 171 34 13 chr11 16123186 16125296 -132658176 + L1M1 LINE L1 3617 5807 -497 2726 108 3 5 chr11 16125396 16125784 -132657688 + THE1B-int LTR MaLR 1194 1580 0 2599 101 3 6 chr11 16125784 16126149 -132657323 + THE1B LTR MaLR 1 364 0 1233 101 0 39 chr11 16126149 16126356 -132657116 + L1MA2 LINE L1 6106 6304 0 201 39 0 0 chr11 16126621 16126647 -132656825 + (TAGGG)n Simple_repeat Simple_repeat 5 30 0 382 373 52 12 chr11 16127259 16127511 -132655961 + L2 LINE L2 2995 3256 -16 1186 31 13 0 chr11 16127956 16128115 -132655357 + (GAAA)n Simple_repeat Simple_repeat 1 161 0 2093 101 7 0 chr11 16129269 16129591 -132653881 - AluSg SINE Alu 0 324 1 1172 216 39 12 chr11 16129647 16129901 -132653571 - MIR SINE MIR 0 262 2 2853 138 40 0 chr11 16130045 16130493 -132652979 + Tigger1 DNA MER2_type 1 466 -1952 * 8613 116 37 30 chr11 16130488 16131635 -132651837 + Tigger1 DNA MER2_type 1014 2151 -267 1789 112 0 4 chr11 16131635 16131886 -132651586 - AluSc SINE Alu -21 288 39 8613 116 37 30 chr11 16131886 16132015 -132651457 + Tigger1 DNA MER2_type 2151 2278 -140 1400 177 0 113 chr11 16132015 16132342 -132651130 - AluJo SINE Alu -12 290 1 8613 116 37 30 chr11 16132342 16132458 -132651014 + Tigger1 DNA MER2_type 2278 2417 -1 1716 143 40 4 chr11 16132760 16133067 -132650405 + AluSx SINE Alu 1 317 0 2323 99 47 11 chr11 16133290 16133652 -132649820 + THE1C LTR MaLR 1 375 0 216 293 154 8 chr11 16133842 16133965 -132649507 - MIR SINE MIR -69 193 53 3618 220 114 38 chr11 16134000 16134159 -132649313 - L1MC4 LINE L1 -327 7715 7569 3507 31 0 0 chr11 16134159 16134578 -132648894 - L1PA4 LINE L1 -3 6152 5734 3618 220 114 38 chr11 16134578 16135552 -132647920 - L1MC4 LINE L1 -473 7569 6496 245 29 29 0 chr11 16135552 16135586 -132647886 + (TA)n Simple_repeat Simple_repeat 1 35 0 231 215 101 25 chr11 16135636 16135715 -132647757 - L1MC4 LINE L1 -1340 6702 6618 2288 64 4 0 chr11 16136190 16136503 -132646969 + AluY SINE Alu 1 314 0 471 339 32 29 chr11 16136852 16137200 -132646272 + L1PA15 LINE L1 2 350 -7231 8252 226 18 25 chr11 16138155 16140871 -132642601 + L1PA15 LINE L1 2319 5036 -2548 2756 192 3 37 chr11 16140866 16141491 -132641981 + L1PA15 LINE L1 5767 6370 -1214 * 1398 164 50 47 chr11 16141493 16141667 -132641805 - THE1B LTR MaLR 0 364 192 3306 91 4 0 chr11 16141667 16142119 -132641353 + L1PA6 LINE L1 5686 6139 -15 1398 164 50 47 chr11 16142119 16142366 -132641106 - THE1B LTR MaLR -172 192 1 5220 149 24 12 chr11 16142366 16142833 -132640639 + L1PA15 LINE L1 6368 6828 -775 2265 108 118 40 chr11 16142833 16143053 -132640419 - MSTA LTR MaLR 0 428 227 2878 9 0 0 chr11 16143053 16143371 -132640101 - AluYb8 SINE Alu 0 318 1 2265 108 118 40 chr11 16143371 16143547 -132639925 - MSTA LTR MaLR -201 227 1 5220 149 24 12 chr11 16143547 16144255 -132639217 + L1PA15 LINE L1 6828 7560 -43 906 271 114 36 chr11 16144845 16145347 -132638125 - L2 LINE L2 0 3313 2762 23 54 0 0 chr11 16145841 16145878 -132637594 + AT_rich Low_complexity Low_complexity 1 37 0 6159 207 23 75 chr11 16146066 16146451 -132637021 - L1MB4 LINE L1 0 6180 5776 399 89 0 0 chr11 16146451 16146507 -132636965 + (TA)n Simple_repeat Simple_repeat 1 56 0 6159 207 23 75 chr11 16146507 16148320 -132635152 - L1MB4 LINE L1 -404 5776 4047 910 200 0 0 chr11 16148320 16148465 -132635007 - FRAM SINE Alu -31 145 1 6159 207 23 75 chr11 16148465 16149123 -132634349 - L1MB4 LINE L1 -2133 4047 3356 219 69 0 0 chr11 16149216 16149245 -132634227 + (TG)n Simple_repeat Simple_repeat 2 30 0 219 69 0 0 chr11 16149269 16149298 -132634174 + (TG)n Simple_repeat Simple_repeat 2 30 0 351 297 33 82 chr11 16149301 16149483 -132633989 - MIR SINE MIR -70 192 20 33 25 0 0 chr11 16149868 16149908 -132633564 + AT_rich Low_complexity Low_complexity 1 40 0 7109 162 12 6 chr11 16149917 16152193 -132631279 - L1PB1 LINE L1 -61 6090 3805 250 235 10 51 chr11 16153803 16153901 -132629571 + CT-rich Low_complexity Low_complexity 3 96 0 180 358 28 64 chr11 16155531 16155640 -132627832 - L2 LINE L2 -6 3266 3162 21 57 0 0 chr11 16155713 16155748 -132627724 + AT_rich Low_complexity Low_complexity 1 35 0 285 379 75 0 chr11 16158239 16158400 -132625072 - MIR SINE MIR -68 194 22 216 0 0 0 chr11 16160988 16161012 -132622460 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 257 265 99 43 chr11 16162708 16162870 -132620602 + MIR SINE MIR 34 204 -58 338 245 10 61 chr11 16162987 16163085 -132620387 + L2 LINE L2 3181 3273 -40 2691 126 11 26 chr11 16165219 16165672 -132617800 + L1MC1 LINE L1 5888 6333 0 228 229 16 33 chr11 16165703 16165764 -132617708 - L2 LINE L2 0 3313 3254 541 208 0 0 chr11 16165834 16165940 -132617532 + MER20 DNA MER1_type 113 218 -1 296 245 51 20 chr11 16165951 16166049 -132617423 - L2 LINE L2 -62 3251 3151 207 204 0 0 chr11 16166529 16166573 -132616899 + (TA)n Simple_repeat Simple_repeat 1 44 0 276 306 0 0 chr11 16166638 16166723 -132616749 - MIR SINE MIR -104 158 74 651 232 74 36 chr11 16168922 16169147 -132614325 + MIR SINE MIR 28 251 -11 284 264 0 28 chr11 16169184 16169256 -132614216 - L2 LINE L2 0 3313 3244 208 175 0 25 chr11 16169360 16169400 -132614072 + (TATG)n Simple_repeat Simple_repeat 2 40 0 181 222 0 44 chr11 16169634 16169679 -132613793 - MIR3 SINE MIR -2 206 164 * 197 200 0 0 chr11 16169645 16169680 -132613792 - L3b LINE CR1 -7 1576 1542 * 412 263 165 17 chr11 16169673 16169862 -132613610 + MIR SINE MIR 40 252 -10 * 421 284 24 47 chr11 16169811 16169938 -132613534 - MIR3 SINE MIR -15 193 70 535 340 82 58 chr11 16170280 16170776 -132612696 - L2 LINE L2 -4 3268 2776 21 0 0 0 chr11 16172481 16172502 -132610970 + AT_rich Low_complexity Low_complexity 1 21 0 1060 184 20 30 chr11 16172502 16172703 -132610769 - AluJo SINE Alu -20 292 94 732 192 29 24 chr11 16173078 16173255 -132610217 - MIR SINE MIR -16 246 68 213 231 0 0 chr11 16173299 16173351 -132610121 + T-rich Low_complexity Low_complexity 1 52 0 700 130 55 20 chr11 16173356 16173502 -132609970 - L1MA7 LINE L1 -1 6290 6140 287 25 0 0 chr11 16173502 16173542 -132609930 - L1PA2 LINE L1 -4 6151 6112 998 184 18 0 chr11 16174035 16174203 -132609269 + AluSq SINE Alu 128 298 -15 41831 57 4 0 chr11 16174465 16180587 -132602885 + L1PA5 LINE L1 11 6153 -1 287 53 0 0 chr11 16185936 16185974 -132597498 - AluSx SINE Alu -6 296 259 1308 104 19 66 chr11 16185974 16186040 -132597432 - AluSx SINE Alu -110 202 134 2115 132 0 0 chr11 16186040 16186335 -132597137 - AluSc SINE Alu -12 297 3 1308 104 19 66 chr11 16186335 16186480 -132596992 - AluSx SINE Alu -178 134 1 1127 244 37 0 chr11 16188402 16188644 -132594828 + MIR SINE MIR 2 252 -10 375 269 211 6 chr11 16188654 16188810 -132594662 + MIR SINE MIR 49 236 -26 464 297 21 0 chr11 16189209 16189354 -132594118 + MIR3 SINE MIR 46 193 -15 387 328 162 35 chr11 16189474 16189764 -132593708 + L2 LINE L2 2062 2388 -926 796 251 176 23 chr11 16189774 16190165 -132593307 + L2 LINE L2 2805 3255 -58 240 362 23 23 chr11 16190296 16190470 -132593002 + L2 LINE L2 2489 2662 -652 189 329 131 44 chr11 16190514 16190651 -132592821 + L2 LINE L2 2234 2382 -932 533 340 105 40 chr11 16190739 16191284 -132592188 + L2 LINE L2 2669 3251 -21 308 333 99 0 chr11 16191982 16192038 -132591434 - MIR SINE MIR -55 207 158 327 65 0 0 chr11 16192038 16192084 -132591388 + (TG)n Simple_repeat Simple_repeat 2 47 0 308 333 99 0 chr11 16192084 16192168 -132591304 - MIR SINE MIR -104 158 53 598 338 130 25 chr11 16193250 16193650 -132589822 - LTR16A LTR ERVL 0 450 9 807 188 82 77 chr11 16194201 16194409 -132589063 + MER63A DNA MER1_type 1 209 -1 310 214 11 11 chr11 16194488 16194577 -132588895 + (TA)n Simple_repeat Simple_repeat 2 90 0 2237 142 89 2 chr11 16195532 16195926 -132587546 + MSTA LTR MaLR 1 428 0 205 333 0 29 chr11 16195928 16195997 -132587475 + MIR3 SINE MIR 90 156 -52 278 273 23 40 chr11 16196084 16196260 -132587212 + GA-rich Low_complexity Low_complexity 2 174 0 432 176 42 129 chr11 16196294 16196487 -132586985 - MER112 DNA MER1_type -84 176 1 190 0 0 0 chr11 16197155 16197176 -132586296 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1373 185 75 8 chr11 16197176 16197441 -132586031 - AluJo SINE Alu -29 283 1 2131 97 13 10 chr11 16197714 16198023 -132585449 + AluSg SINE Alu 1 310 0 259 314 57 0 chr11 16198469 16198539 -132584933 + L2 LINE L2 3139 3212 -60 2364 91 0 0 chr11 16198788 16199085 -132584387 + AluSx SINE Alu 1 297 -15 284 238 50 12 chr11 16199105 16199185 -132584287 + MIR SINE MIR 180 262 0 241 363 116 14 chr11 16199667 16199813 -132583659 - L2 LINE L2 -27 3286 3126 1539 274 114 60 chr11 16200151 16201186 -132582286 + L2 LINE L2 2204 3308 -5 26 30 0 0 chr11 16204699 16204732 -132578740 + AT_rich Low_complexity Low_complexity 1 33 0 374 312 74 32 chr11 16205855 16206044 -132577428 - MIR3 SINE MIR -6 202 6 32 43 0 0 chr11 16206982 16207028 -132576444 + AT_rich Low_complexity Low_complexity 1 46 0 935 163 33 0 chr11 16207037 16207190 -132576282 - FRAM SINE Alu -26 150 1 284 259 141 0 chr11 16208526 16208611 -132574861 - MIR SINE MIR -102 160 64 531 82 0 0 chr11 16209211 16209284 -132574188 + (TGGA)n Simple_repeat Simple_repeat 2 74 0 201 39 0 0 chr11 16209283 16209309 -132574163 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 599 266 53 6 chr11 16209376 16209545 -132573927 + MER5B DNA MER1_type 1 177 -1 696 256 164 30 chr11 16210402 16210646 -132572826 + MER113 DNA MER1_type? 31 241 -280 369 43 0 0 chr11 16210646 16210693 -132572779 + (TC)n Simple_repeat Simple_repeat 2 48 0 696 256 164 30 chr11 16210693 16210851 -132572621 + MER113 DNA MER1_type? 241 487 -34 22 35 0 0 chr11 16213656 16213685 -132569787 + AT_rich Low_complexity Low_complexity 1 29 0 521 319 88 0 chr11 16214111 16214315 -132569157 + MIR SINE MIR 31 252 -10 825 217 38 19 chr11 16214797 16215009 -132568463 + MER20 DNA MER1_type 4 219 0 22 35 0 0 chr11 16215790 16215819 -132567653 + AT_rich Low_complexity Low_complexity 1 29 0 231 389 160 0 chr11 16217782 16217926 -132565546 + L2 LINE L2 3106 3272 0 415 230 40 32 chr11 16220689 16220815 -132562657 + MER94 DNA DNA 5 131 -3 227 267 89 22 chr11 16220854 16220944 -132562528 - MIR3 SINE MIR -24 184 89 186 43 0 0 chr11 16221135 16221158 -132562314 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 232 261 62 0 chr11 16221802 16221867 -132561605 + L2 LINE L2 3235 3303 -10 269 383 30 18 chr11 16222838 16223005 -132560467 + L3b LINE CR1 1269 1437 -146 388 368 0 30 chr11 16223122 16223255 -132560217 - L2 LINE L2 -5 3267 3139 1961 149 3 0 chr11 16223255 16223557 -132559915 + AluSx SINE Alu 1 303 -9 396 376 82 46 chr11 16223838 16223879 -132559593 - L2 LINE L2 -342 2972 2934 273 57 0 0 chr11 16223879 16223914 -132559558 + (TG)n Simple_repeat Simple_repeat 2 36 0 396 376 82 46 chr11 16223914 16224175 -132559297 - L2 LINE L2 -380 2934 2659 21 0 0 0 chr11 16224870 16224891 -132558581 + AT_rich Low_complexity Low_complexity 1 21 0 994 154 0 0 chr11 16224917 16225073 -132558399 - MER2 DNA MER2_type -135 210 55 1599 161 20 26 chr11 16225646 16225950 -132557522 + AluJo SINE Alu 1 302 -10 288 77 0 0 chr11 16226316 16226355 -132557117 + (T)n Simple_repeat Simple_repeat 1 39 0 27 49 0 0 chr11 16227214 16227255 -132556217 + AT_rich Low_complexity Low_complexity 1 41 0 871 224 0 0 chr11 16227692 16227866 -132555606 + FRAM SINE Alu 1 167 -9 282 277 129 0 chr11 16229658 16229798 -132553674 - MIR SINE MIR -64 144 26 217 393 35 14 chr11 16230023 16230168 -132553304 - MIR3 SINE MIR -41 167 20 864 259 53 0 chr11 16230579 16230822 -132552650 - MIR SINE MIR 0 262 7 2274 107 0 0 chr11 16231295 16231603 -132551869 - AluSx SINE Alu 0 312 5 1734 88 0 80 chr11 16232499 16232816 -132550656 - AluSq SINE Alu 0 328 34 259 280 15 76 chr11 16233866 16233998 -132549474 - MIR SINE MIR -134 128 5 216 232 29 58 chr11 16235225 16235294 -132548178 + L2 LINE L2 3230 3296 -17 2105 104 3 36 chr11 16235297 16235605 -132547867 + AluSx SINE Alu 1 298 -14 467 235 26 17 chr11 16235637 16235752 -132547720 + MER94 DNA DNA 10 125 -9 225 151 38 0 chr11 16235957 16236010 -132547462 + (TA)n Simple_repeat Simple_repeat 1 55 0 2816 10 0 0 chr11 16236096 16236406 -132547066 - AluYa5 SINE Alu -1 310 1 27 49 0 0 chr11 16236427 16236468 -132547004 + AT_rich Low_complexity Low_complexity 1 41 0 690 124 16 0 chr11 16238480 16238601 -132544871 + L1MA8 LINE L1 6169 6291 0 620 280 42 26 chr11 16239221 16239410 -132544062 - MIR3 SINE MIR -1 207 16 484 294 150 0 chr11 16240249 16240402 -132543070 + MIR3 SINE MIR 8 183 -25 691 256 135 9 chr11 16240932 16241162 -132542310 + MIR SINE MIR 3 261 -1 226 287 90 25 chr11 16241355 16241477 -132541995 + L2 LINE L2 2715 2844 -470 235 280 11 11 chr11 16241669 16241762 -132541710 + L1ME LINE L1 5717 5809 -353 2323 67 27 0 chr11 16241794 16242094 -132541378 + AluY SINE Alu 1 308 -3 329 296 112 0 chr11 16242094 16242192 -132541280 - L2 LINE L2 -1 3312 3204 29 28 0 0 chr11 16242247 16242283 -132541189 + AT_rich Low_complexity Low_complexity 1 36 0 829 183 0 0 chr11 16242811 16242953 -132540519 + Charlie1a DNA MER1_type 72 213 -1242 2389 184 108 19 chr11 16242971 16243812 -132539660 + Charlie1a DNA MER1_type 461 1455 0 1674 169 10 3 chr11 16243947 16244242 -132539230 + AluSx SINE Alu 1 297 -15 328 351 15 22 chr11 16244315 16244449 -132539023 + MIR SINE MIR 48 180 -82 3265 137 21 14 chr11 16244476 16245044 -132538428 + L1MB8 LINE L1 5505 6076 -102 1124 314 66 35 chr11 16245246 16245894 -132537578 - L2 LINE L2 -72 3241 2570 550 289 47 33 chr11 16245894 16246105 -132537367 - LTR33 LTR ERVL -30 491 278 525 327 96 19 chr11 16246131 16246339 -132537133 - LTR33 LTR ERVL -297 224 1 562 271 90 12 chr11 16246341 16246507 -132536965 - L2 LINE L2 -841 2473 2295 21 100 0 0 chr11 16246881 16246951 -132536521 + AT_rich Low_complexity Low_complexity 1 70 0 624 265 176 43 chr11 16246971 16247276 -132536196 - L1ME LINE L1 -367 5754 5413 845 227 30 5 chr11 16248479 16248682 -132534790 + MER3 DNA MER1_type 2 209 0 2248 106 0 0 chr11 16249221 16249522 -132533950 - AluSg SINE Alu -9 301 1 197 95 0 24 chr11 16250318 16250360 -132533112 + (TTTTTG)n Simple_repeat Simple_repeat 4 44 0 521 342 78 8 chr11 16250434 16250677 -132532795 + MIR SINE MIR 3 262 0 209 298 0 0 chr11 16250778 16250835 -132532637 + L2 LINE L2 3255 3311 -2 226 261 14 29 chr11 16250844 16250913 -132532559 + L3 LINE CR1 1497 1564 -13 216 255 35 103 chr11 16255151 16255296 -132528176 - MIR SINE MIR -28 234 100 4767 185 98 38 chr11 16255536 16256736 -132526736 + Charlie1a DNA MER1_type 1 1271 -184 644 202 0 0 chr11 16256739 16256853 -132526619 - AluJo SINE Alu -64 248 135 731 179 0 15 chr11 16256854 16256988 -132526484 - AluJo SINE Alu -170 132 1 447 173 115 32 chr11 16256998 16257154 -132526318 + Charlie1a DNA MER1_type 1282 1450 -5 24 0 0 0 chr11 16257378 16257402 -132526070 + AT_rich Low_complexity Low_complexity 1 24 0 328 366 23 0 chr11 16259321 16259452 -132524020 + MIR3 SINE MIR 75 208 0 28 61 0 0 chr11 16259595 16259644 -132523828 + AT_rich Low_complexity Low_complexity 1 49 0 219 36 0 0 chr11 16260794 16260822 -132522650 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 326 335 77 0 chr11 16261465 16261620 -132521852 + MIR SINE MIR 47 213 -49 228 282 28 14 chr11 16261740 16261811 -132521661 - L3 LINE CR1 -23 1554 1483 180 39 0 0 chr11 16261871 16261897 -132521575 - L2 LINE L2 0 3313 3288 862 191 66 0 chr11 16261915 16262067 -132521405 - AluJb SINE Alu -19 293 132 201 146 24 49 chr11 16262067 16262108 -132521364 - L2 LINE L2 -11 3302 3263 297 331 52 64 chr11 16262270 16262390 -132521082 - L3 LINE CR1 -364 1213 1094 2221 110 0 0 chr11 16262390 16262689 -132520783 + AluSx SINE Alu 1 299 -13 297 331 52 64 chr11 16262689 16262740 -132520732 - L3 LINE CR1 -483 1094 1044 23 78 0 0 chr11 16262766 16262817 -132520655 + AT_rich Low_complexity Low_complexity 1 51 0 1509 199 10 3 chr11 16262959 16263265 -132520207 + L1MA9 LINE L1 5967 6274 -38 21 71 0 0 chr11 16263445 16263487 -132519985 + AT_rich Low_complexity Low_complexity 1 42 0 508 276 115 56 chr11 16263702 16264112 -132519360 + L1ME4a LINE L1 2924 3357 -2789 359 265 103 47 chr11 16264876 16265110 -132518362 + L1ME4a LINE L1 4279 4525 -1621 252 352 51 21 chr11 16265246 16265578 -132517894 + L1ME4a LINE L1 4717 5058 -1088 825 290 109 39 chr11 16265725 16266529 -132516943 + L1ME4a LINE L1 5258 6118 -3 706 206 60 112 chr11 16268049 16268201 -132515271 - MIR SINE MIR 0 262 128 2200 114 3 0 chr11 16268201 16268509 -132514963 + AluSc SINE Alu 1 309 0 706 206 60 112 chr11 16268509 16268623 -132514849 - MIR SINE MIR -134 128 10 23 33 0 0 chr11 16269166 16269196 -132514276 + AT_rich Low_complexity Low_complexity 1 30 0 195 100 0 0 chr11 16270565 16270595 -132512877 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 25 51 0 0 chr11 16272189 16272228 -132511244 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr11 16272597 16272625 -132510847 + AT_rich Low_complexity Low_complexity 1 28 0 207 100 0 0 chr11 16273769 16273799 -132509673 + (TC)n Simple_repeat Simple_repeat 1 30 0 369 0 0 0 chr11 16274745 16274786 -132508686 + (TG)n Simple_repeat Simple_repeat 1 41 0 322 295 50 36 chr11 16275206 16275345 -132508127 - MIR3 SINE MIR -19 189 49 390 248 110 97 chr11 16276175 16276485 -132506987 + MLT1K LTR MaLR 263 576 -12 1851 163 77 6 chr11 16276613 16276938 -132506534 + MER7A DNA MER2_type 1 346 0 231 224 35 94 chr11 16277624 16277709 -132505763 - MIR SINE MIR -3 259 180 190 281 67 79 chr11 16277817 16277906 -132505566 + L2 LINE L2 3158 3245 -27 2867 224 42 33 chr11 16277989 16278783 -132504689 - L1ME2 LINE L1 -9 6224 5424 2098 268 36 8 chr11 16278806 16279217 -132504255 - L1ME2 LINE L1 -890 5325 4886 237 83 0 0 chr11 16279217 16279253 -132504219 + (TG)n Simple_repeat Simple_repeat 2 37 0 2098 268 36 8 chr11 16279253 16279512 -132503960 - L1ME2 LINE L1 -1329 4886 4636 2988 231 74 20 chr11 16279523 16281195 -132502277 - L1ME2 LINE L1 -3116 3099 1370 26 30 0 0 chr11 16281204 16281237 -132502235 + AT_rich Low_complexity Low_complexity 1 33 0 3106 173 28 16 chr11 16281237 16281879 -132501593 - L1MA3 LINE L1 0 6305 5656 2320 112 38 16 chr11 16281879 16282246 -132501226 - THE1C LTR MaLR 0 375 1 10418 111 28 12 chr11 16282246 16283285 -132500187 - THE1C-int LTR MaLR 0 1580 508 2085 116 13 19 chr11 16283285 16283595 -132499877 + AluSc SINE Alu 1 308 -1 10418 111 28 12 chr11 16283595 16284110 -132499362 - THE1C-int LTR MaLR -1072 508 2 548 325 22 4 chr11 16284170 16284398 -132499074 - L1ME2 LINE L1 -6145 251 20 246 150 0 0 chr11 16284529 16284569 -132498903 + Charlie3 DNA MER1_type 1 40 -2670 227 207 46 81 chr11 16284564 16284651 -132498821 - Charlie3 DNA MER1_type -2394 316 233 * 739 189 0 0 chr11 16284580 16284702 -132498770 + Charlie3 DNA MER1_type 134 255 -2455 3039 263 149 17 chr11 16284806 16286642 -132496830 + L1ME3 LINE L1 2187 4238 -1977 * 11045 195 61 28 chr11 16286637 16287535 -132495937 + L1MC1 LINE L1 4 871 -5742 2155 114 0 3 chr11 16287535 16287833 -132495639 + AluSp SINE Alu 1 297 -16 11045 195 61 28 chr11 16287833 16291183 -132492289 + L1MC1 LINE L1 871 4528 -2085 203 0 37 0 chr11 16291183 16291210 -132492262 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 11045 195 61 28 chr11 16291210 16293290 -132490182 + L1MC1 LINE L1 4528 6538 -75 419 224 9 0 chr11 16293292 16293399 -132490073 + (TA)n Simple_repeat Simple_repeat 2 109 0 389 146 37 0 chr11 16293400 16293482 -132489990 + L1MC2 LINE L1 6260 6344 0 996 238 110 23 chr11 16293485 16294158 -132489314 + L1ME3 LINE L1 4248 5990 -243 850 217 16 68 chr11 16294258 16294507 -132488965 + L1ME3 LINE L1 5989 6224 -7 261 0 0 0 chr11 16294517 16294546 -132488926 + (TG)n Simple_repeat Simple_repeat 2 30 0 209 189 0 0 chr11 16294546 16294583 -132488889 + (CATATA)n Simple_repeat Simple_repeat 4 40 0 2156 87 7 3 chr11 16294583 16294869 -132488603 - AluY SINE Alu -22 289 3 618 320 43 68 chr11 16295340 16295850 -132487622 + L2 LINE L2 2756 3271 -1 220 239 0 0 chr11 16297712 16297722 -132485750 + (TAA)n Simple_repeat Simple_repeat 3 12 -36 21 0 0 0 chr11 16297722 16297743 -132485729 + AT_rich Low_complexity Low_complexity 1 21 0 220 239 0 0 chr11 16297743 16297758 -132485714 + (TAA)n Simple_repeat Simple_repeat 11 48 0 378 245 49 0 chr11 16298331 16298433 -132485039 - L1MC4 LINE L1 -14 8028 7922 2701 255 72 20 chr11 16298457 16299374 -132484098 - L1MC4a LINE L1 -1432 6376 5412 5512 229 47 23 chr11 16299385 16302894 -132480578 + L1MA7 LINE L1 44 6349 -11 773 200 27 85 chr11 16302967 16303227 -132480245 + L1MB4 LINE L1 2329 2573 -3573 1183 292 65 56 chr11 16303252 16304615 -132478857 - L1MC4a LINE L1 -751 5395 4020 4284 178 35 20 chr11 16304660 16305210 -132478262 + L1MB4 LINE L1 5239 5808 -372 246 32 0 0 chr11 16305210 16305241 -132478231 + (CA)n Simple_repeat Simple_repeat 2 32 0 4284 178 35 20 chr11 16305241 16305619 -132477853 + L1MB4 LINE L1 5808 6179 -1 461 304 68 32 chr11 16305643 16306629 -132476843 - L1MC4a LINE L1 -2182 3964 2933 1983 243 58 64 chr11 16308226 16309074 -132474398 + HAL1b LINE L1 469 1311 -37 231 267 23 23 chr11 16309595 16309681 -132473791 + L1MC5 LINE L1 7832 7917 -44 1815 75 0 56 chr11 16309769 16310036 -132473436 + AluY SINE Alu 39 290 -21 216 0 0 0 chr11 16310039 16310063 -132473409 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 311 352 9 0 chr11 16310616 16310721 -132472751 - MIR SINE MIR -125 137 32 232 258 0 48 chr11 16310970 16311032 -132472440 + LTR67 LTR ERVL 99 157 -400 * 319 256 30 58 chr11 16310987 16311091 -132472381 + MLT1L LTR MaLR 111 276 -310 237 262 63 19 chr11 16311252 16311366 -132472106 + MLT1J LTR MaLR 384 584 -31 214 315 68 14 chr11 16311481 16311554 -132471918 + MIR SINE MIR 172 248 -14 1604 191 16 55 chr11 16311695 16312078 -132471394 + MLT1A2 LTR MaLR 1 368 -6 564 317 122 5 chr11 16312373 16312594 -132470878 + MIR SINE MIR 5 251 -11 228 122 0 0 chr11 16316539 16316580 -132466892 + (TA)n Simple_repeat Simple_repeat 2 42 0 25 51 0 0 chr11 16316809 16316848 -132466624 + AT_rich Low_complexity Low_complexity 1 39 0 26 50 0 0 chr11 16317230 16317270 -132466202 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr11 16317398 16317419 -132466053 + AT_rich Low_complexity Low_complexity 1 21 0 479 84 42 0 chr11 16317592 16317687 -132465785 + (TA)n Simple_repeat Simple_repeat 1 99 0 32 43 0 0 chr11 16317878 16317924 -132465548 + AT_rich Low_complexity Low_complexity 1 46 0 517 320 13 7 chr11 16319098 16319248 -132464224 - L2 LINE L2 0 3272 3122 21 0 0 0 chr11 16319581 16319602 -132463870 + AT_rich Low_complexity Low_complexity 1 21 0 2095 109 0 3 chr11 16319826 16320110 -132463362 + AluSp SINE Alu 4 286 -27 27 62 0 0 chr11 16320114 16320162 -132463310 + AT_rich Low_complexity Low_complexity 1 48 0 278 281 16 0 chr11 16320183 16320247 -132463225 + L2 LINE L2 3208 3272 0 369 204 0 34 chr11 16321452 16321540 -132461932 + L1MC5 LINE L1 7831 7915 -46 440 18 18 0 chr11 16321815 16321872 -132461600 + (TC)n Simple_repeat Simple_repeat 1 58 0 279 0 0 0 chr11 16321871 16321902 -132461570 + (CA)n Simple_repeat Simple_repeat 1 31 0 * 438 36 0 0 chr11 16325794 16325850 -132457622 + (TA)n Simple_repeat Simple_repeat 1 56 0 378 235 0 0 chr11 16325928 16326030 -132457442 + (TGAA)n Simple_repeat Simple_repeat 3 104 0 22 80 0 0 chr11 16331582 16331632 -132451840 + AT_rich Low_complexity Low_complexity 1 50 0 854 201 69 0 chr11 16335985 16336159 -132447313 - MER5A DNA MER1_type -3 186 1 455 338 187 19 chr11 16336403 16337060 -132446412 + L2 LINE L2 2260 3029 -243 2057 132 3 0 chr11 16337130 16337441 -132446031 - AluSx SINE Alu 0 312 1 909 266 22 62 chr11 16337693 16337912 -132445560 - L1M4 LINE L1 -1554 4592 4366 2029 130 3 3 chr11 16337912 16338227 -132445245 - AluSx SINE Alu 0 315 1 909 266 22 62 chr11 16338227 16338261 -132445211 - L1M4 LINE L1 -1780 4366 4332 1677 178 24 68 chr11 16338261 16338643 -132444829 + MLT1A1 LTR MaLR 1 365 0 909 266 22 62 chr11 16338643 16338739 -132444733 - L1M4 LINE L1 -1814 4332 4256 192 77 0 0 chr11 16338739 16338765 -132444707 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 909 266 22 62 chr11 16338765 16338814 -132444658 - L1M4 LINE L1 -1890 4256 4207 * 4686 209 24 38 chr11 16338810 16340324 -132443148 + L1MD2 LINE L1 4872 6358 -1 2266 110 0 3 chr11 16340625 16340935 -132442537 - AluSc SINE Alu 0 309 1 250 398 24 0 chr11 16342380 16342503 -132440969 - MIR3 SINE MIR -37 171 46 610 257 75 50 chr11 16343161 16343480 -132439992 + L1ME3A LINE L1 5627 5953 -217 240 235 0 0 chr11 16345280 16345331 -132438141 + (TAA)n Simple_repeat Simple_repeat 2 52 0 548 244 55 0 chr11 16345346 16345473 -132437999 - MIR SINE MIR -57 205 72 771 276 45 12 chr11 16345483 16345726 -132437746 - MIR SINE MIR -11 251 1 201 264 0 0 chr11 16346967 16347020 -132436452 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 338 350 90 52 chr11 16347698 16348221 -132435251 + L2 LINE L2 2306 2848 -466 241 346 69 8 chr11 16348273 16348403 -132435069 + L2 LINE L2 2933 3070 -202 1633 200 67 24 chr11 16348622 16348944 -132434528 + Charlie4a DNA MER1_type 24 331 -1630 199 0 0 0 chr11 16348944 16348966 -132434506 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 1892 102 64 4 chr11 16348966 16349230 -132434242 - AluSc SINE Alu -1 301 1 1633 200 67 24 chr11 16349230 16349371 -132434101 + Charlie4a DNA MER1_type 330 508 0 1699 338 40 28 chr11 16349546 16350360 -132433112 - L3 LINE CR1 -78 1499 676 28 29 0 0 chr11 16350378 16350413 -132433059 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr11 16351245 16351287 -132432185 + AT_rich Low_complexity Low_complexity 1 42 0 24 67 0 0 chr11 16352030 16352075 -132431397 + AT_rich Low_complexity Low_complexity 1 45 0 29 0 0 0 chr11 16352770 16352799 -132430673 + AT_rich Low_complexity Low_complexity 1 29 0 3716 40 44 4 chr11 16353374 16353852 -132429620 - L1PA5 LINE L1 0 6154 5658 206 301 0 78 chr11 16354499 16354602 -132428870 + MIR SINE MIR 168 262 0 475 146 0 0 chr11 16354722 16354804 -132428668 + L1MB8 LINE L1 6088 6169 -9 200 267 67 0 chr11 16354837 16354897 -132428575 + L2 LINE L2 3200 3263 -9 2229 115 142 5 chr11 16356173 16356546 -132426926 + MSTA LTR MaLR 1 424 -4 308 274 143 24 chr11 16356636 16356804 -132426668 - MER5A DNA MER1_type -1 188 1 276 339 48 0 chr11 16357520 16357644 -132425828 + L2 LINE L2 2926 3055 -217 1606 195 3 10 chr11 16357914 16358227 -132425245 + AluJo SINE Alu 1 311 -1 330 339 6 12 chr11 16358383 16358551 -132424921 + L1ME4a LINE L1 5708 5874 -247 635 125 8 33 chr11 16358583 16358703 -132424769 - L1MA5 LINE L1 0 6300 6184 1671 159 79 3 chr11 16358704 16359019 -132424453 + L1MA4 LINE L1 5750 6088 -212 287 221 148 27 chr11 16359035 16359184 -132424288 + L1ME4a LINE L1 5955 6121 0 359 284 74 45 chr11 16359252 16359495 -132423977 + L1ME4a LINE L1 5870 6119 -2 680 318 70 37 chr11 16359681 16359744 -132423728 - L3 LINE CR1 -170 1407 1347 1506 135 69 101 chr11 16359744 16360121 -132423351 + MLT1A1 LTR MaLR 1 365 0 680 318 70 37 chr11 16360121 16360431 -132423041 - L3 LINE CR1 -230 1347 1022 854 276 71 77 chr11 16360693 16361225 -132422247 - MLT1F1 LTR MaLR 0 567 39 323 257 129 0 chr11 16361227 16361328 -132422144 + MIR SINE MIR 149 262 0 1379 248 13 6 chr11 16362048 16362362 -132421110 + MER90 LTR ERV1 297 612 -2 310 261 42 8 chr11 16362362 16362468 -132421004 + MER97b DNA MER1_type? 59 168 -885 880 266 23 53 chr11 16363498 16363761 -132419711 + MIR SINE MIR 6 260 -2 781 298 172 25 chr11 16363759 16364155 -132419317 - L3 LINE CR1 -82 1495 1042 * 2070 118 0 10 chr11 16364284 16364590 -132418882 + AluSx SINE Alu 1 303 -9 512 315 67 6 chr11 16364735 16364913 -132418559 - MIR3 SINE MIR -1 207 19 2311 105 0 0 chr11 16368446 16368741 -132414731 - AluSx SINE Alu -17 295 1 1066 294 113 36 chr11 16370385 16371165 -132412307 + L2 LINE L2 2457 3288 -25 189 74 0 0 chr11 16372363 16372390 -132411082 + (CA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr11 16372837 16372859 -132410613 + AT_rich Low_complexity Low_complexity 1 22 0 780 340 84 22 chr11 16373061 16373790 -132409682 + L2 LINE L2 2529 3312 -1 188 196 0 20 chr11 16382026 16382077 -132401395 + GA-rich Low_complexity Low_complexity 3 52 0 22 70 0 0 chr11 16382523 16382566 -132400906 + AT_rich Low_complexity Low_complexity 1 43 0 1983 148 7 0 chr11 16383349 16383654 -132399818 + AluSx SINE Alu 1 307 -5 1099 59 7 7 chr11 16383668 16383821 -132399651 + (GGAA)n Simple_repeat Simple_repeat 2 154 0 484 226 21 0 chr11 16384834 16384927 -132398545 + L2 LINE L2 3197 3291 -22 205 387 45 18 chr11 16385925 16386036 -132397436 + L2 LINE L2 3144 3257 -15 524 121 11 0 chr11 16386271 16386362 -132397110 + (TGGA)n Simple_repeat Simple_repeat 3 94 0 678 269 15 92 chr11 16386386 16386646 -132396826 - MIR SINE MIR -4 258 19 23 54 0 0 chr11 16386667 16386704 -132396768 + AT_rich Low_complexity Low_complexity 1 37 0 403 299 116 6 chr11 16388156 16388320 -132395152 + MIR SINE MIR 71 252 -10 211 136 114 0 chr11 16392791 16392835 -132390637 + MIR SINE MIR 98 146 -62 408 347 89 79 chr11 16392951 16393506 -132389966 - L2 LINE L2 -1 3271 2709 726 252 60 17 chr11 16393859 16394093 -132389379 - MIR SINE MIR -16 246 3 464 369 95 0 chr11 16394104 16394283 -132389189 - MIR SINE MIR -12 250 55 186 306 83 28 chr11 16394336 16394444 -132389028 + L2 LINE L2 2937 3050 -222 207 271 83 52 chr11 16394642 16394738 -132388734 + L2 LINE L2 3168 3266 -6 2341 94 0 0 chr11 16394769 16395077 -132388395 + AluY SINE Alu 1 308 -3 661 255 21 37 chr11 16395138 16395326 -132388146 - MIR SINE MIR -73 189 5 218 318 129 41 chr11 16395966 16396136 -132387336 - MIR SINE MIR -15 247 63 428 211 128 9 chr11 16397052 16397161 -132386311 - L2 LINE L2 0 3313 3192 207 298 0 0 chr11 16397160 16397207 -132386265 + L3 LINE CR1 1520 1566 -11 * 223 227 182 30 chr11 16397260 16397326 -132386146 + L2 LINE L2 3196 3271 -1 1041 165 80 31 chr11 16397340 16397564 -132385908 + MER46A DNA MER2_type 2 236 0 548 320 23 6 chr11 16397858 16398030 -132385442 - MIR3 SINE MIR -31 177 3 456 236 37 47 chr11 16398505 16398670 -132384802 + MIR SINE MIR 2 172 -62 299 297 164 23 chr11 16398838 16398966 -132384506 + MIR SINE MIR 2 147 -115 1801 158 48 6 chr11 16399019 16399335 -132384137 + MER44D DNA MER2_type 11 609 0 336 127 0 0 chr11 16399335 16399390 -132384082 + (TG)n Simple_repeat Simple_repeat 2 56 0 22 56 0 0 chr11 16399401 16399437 -132384035 + AT_rich Low_complexity Low_complexity 1 36 0 241 260 220 20 chr11 16400487 16400637 -132382835 - MIR SINE MIR -70 192 13 911 207 62 0 chr11 16401940 16402133 -132381339 - MER6B DNA MER2_type -4 206 2 1298 175 0 0 chr11 16402332 16402538 -132380934 + AluJb SINE Alu 82 287 -25 1527 184 85 14 chr11 16402560 16403005 -132380467 + L1ME4a LINE L1 4890 5366 -780 689 181 49 7 chr11 16403005 16403149 -132380323 + BC200 scRNA scRNA 1 150 -50 636 161 39 8 chr11 16403151 16403281 -132380191 + L1ME4a LINE L1 5361 5494 -690 522 316 125 8 chr11 16403282 16403538 -132379934 + L2 LINE L2 2970 3255 -58 575 264 119 34 chr11 16403773 16404337 -132379135 + LTR50 LTR ERVL 1 683 -112 2882 234 30 30 chr11 16404646 16405668 -132377804 + L2 LINE L2 2292 3308 -5 789 159 38 0 chr11 16405831 16405963 -132377509 - Tigger4(Zombi) DNA MER2_type -2594 137 1 247 257 0 14 chr11 16405963 16406033 -132377439 + MIR SINE MIR 194 262 0 871 140 0 7 chr11 16407854 16408004 -132375468 + (GGAA)n Simple_repeat Simple_repeat 1 149 0 413 257 0 80 chr11 16409387 16409500 -132373972 - MIR SINE MIR -69 139 36 3924 51 12 0 chr11 16409741 16410233 -132373239 + L1PA7 LINE L1 5649 6146 -8 286 216 20 49 chr11 16410906 16411008 -132372464 + GA-rich Low_complexity Low_complexity 4 102 0 662 266 61 5 chr11 16411969 16412183 -132371289 + L1ME4a LINE L1 5531 5756 -365 336 120 20 0 chr11 16412205 16412255 -132371217 - L2 LINE L2 -3 3269 3219 283 258 7 80 chr11 16412322 16412473 -132370999 + L1ME4a LINE L1 4564 4703 -1443 22 35 0 0 chr11 16412696 16412725 -132370747 + AT_rich Low_complexity Low_complexity 1 29 0 799 234 22 63 chr11 16412963 16413185 -132370287 - MIR SINE MIR -27 235 23 1257 261 77 31 chr11 16413191 16413235 -132370237 + L1ME4a LINE L1 5327 5368 -753 2186 114 3 0 chr11 16413235 16413534 -132369938 + AluSp SINE Alu 1 300 -13 1257 261 77 31 chr11 16413534 16414085 -132369387 + L1ME4a LINE L1 5368 5943 -178 351 264 169 20 chr11 16414266 16414520 -132368952 + L1ME4a LINE L1 5830 6121 0 269 313 38 0 chr11 16414971 16415051 -132368421 + MIR SINE MIR 57 139 -123 318 188 47 0 chr11 16416878 16416942 -132366530 - MIR SINE MIR -182 80 14 687 287 70 3 chr11 16417483 16417683 -132365789 + MIR SINE MIR 42 250 -12 213 304 78 26 chr11 16417698 16417813 -132365659 + MIR SINE MIR 136 256 -6 236 235 24 35 chr11 16418178 16418263 -132365209 + L1ME4a LINE L1 5985 6068 -53 220 336 47 62 chr11 16419136 16419265 -132364207 - MIR SINE MIR -96 112 35 353 362 104 26 chr11 16420408 16420963 -132362509 + L2 LINE L2 2681 3233 -39 628 222 40 45 chr11 16421161 16421337 -132362135 - MER5B DNA MER1_type 0 178 4 25 51 0 0 chr11 16421781 16421820 -132361652 + AT_rich Low_complexity Low_complexity 1 39 0 2795 244 95 5 chr11 16421944 16422818 -132360654 - L1M4 LINE L1 -1945 4201 3249 895 209 97 81 chr11 16422850 16423132 -132360340 - L1MDa LINE L1 -4821 1259 966 1606 174 10 23 chr11 16423132 16423436 -132360036 - AluJo SINE Alu -12 300 1 895 209 97 81 chr11 16423436 16423608 -132359864 - L1MDa LINE L1 -5114 966 798 1304 267 112 41 chr11 16423614 16423738 -132359734 - L1MDa LINE L1 -5408 662 548 2467 67 0 6 chr11 16423738 16424051 -132359421 + AluY SINE Alu 1 311 0 1304 267 112 41 chr11 16424051 16424491 -132358981 - L1MDa LINE L1 -5522 548 58 501 323 113 60 chr11 16424581 16424736 -132358736 + L2 LINE L2 2901 3046 -226 4998 77 6 0 chr11 16424736 16425400 -132358072 + L1PA7 LINE L1 5485 6152 -2 501 323 113 60 chr11 16425400 16425597 -132357875 + L2 LINE L2 3046 3272 0 283 279 184 0 chr11 16426003 16426139 -132357333 + L1MC4a LINE L1 5725 5885 -1923 301 200 0 0 chr11 16426359 16426414 -132357058 - L2 LINE L2 -2 3311 3257 493 352 68 8 chr11 16427041 16427291 -132356181 - L3 LINE CR1 -127 1450 1186 246 253 0 101 chr11 16428062 16428141 -132355331 + MIR SINE MIR 112 182 -80 700 337 97 31 chr11 16429195 16429720 -132353752 - L2 LINE L2 -11 3302 2748 225 203 241 13 chr11 16430235 16430314 -132353158 + MIR SINE MIR 166 262 0 202 194 0 0 chr11 16430444 16430480 -132352992 + (CA)n Simple_repeat Simple_repeat 1 36 0 22 35 0 0 chr11 16431093 16431122 -132352350 + AT_rich Low_complexity Low_complexity 1 29 0 28 29 0 0 chr11 16431275 16431310 -132352162 + AT_rich Low_complexity Low_complexity 1 35 0 212 342 13 13 chr11 16432102 16432181 -132351291 + MER5A DNA MER1_type 7 85 -104 199 203 0 119 chr11 16432181 16432240 -132351232 + MER5A DNA MER1_type 138 189 0 29 60 0 0 chr11 16432934 16432984 -132350488 + AT_rich Low_complexity Low_complexity 1 50 0 500 268 24 71 chr11 16433050 16433276 -132350196 + MIR SINE MIR 6 216 -46 293 45 0 23 chr11 16433384 16433428 -132350044 + (TTTTA)n Simple_repeat Simple_repeat 1 43 0 672 186 0 9 chr11 16433429 16433542 -132349930 - FRAM SINE Alu -30 146 35 844 277 39 32 chr11 16434118 16434428 -132349044 - L2 LINE L2 -7 3306 2995 370 202 172 17 chr11 16434536 16434718 -132348754 + L1ME4a LINE L1 5716 5935 -186 436 293 0 0 chr11 16434721 16434827 -132348645 - L2 LINE L2 -1 3312 3207 339 357 23 0 chr11 16435609 16435738 -132347734 + MIR3 SINE MIR 67 198 -10 190 0 32 32 chr11 16436163 16436194 -132347278 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 33 25 0 0 chr11 16437893 16437933 -132345539 + AT_rich Low_complexity Low_complexity 1 40 0 870 255 213 25 chr11 16440369 16440791 -132342681 - MLT1H LTR MaLR -25 521 32 3814 154 7 28 chr11 16441959 16442339 -132341133 - L1P LINE L1 -809 5337 4978 2795 3 0 0 chr11 16442339 16442643 -132340829 - AluYa5 SINE Alu -7 304 1 3814 154 7 28 chr11 16442643 16442984 -132340488 - L1P LINE L1 -1168 4978 4631 956 203 0 0 chr11 16442990 16443177 -132340295 - AluY SINE Alu 0 311 125 701 176 0 16 chr11 16443519 16443644 -132339828 - FLAM_A SINE Alu -10 132 10 435 254 117 19 chr11 16444289 16444545 -132338927 + L1M4 LINE L1 3632 3912 -2234 900 141 5 49 chr11 16444703 16444888 -132338584 + L1MA7 LINE L1 5877 6053 -238 462 148 67 104 chr11 16444889 16445024 -132338448 + L1MA7 LINE L1 6161 6290 -1 27 0 0 0 chr11 16445060 16445087 -132338385 + AT_rich Low_complexity Low_complexity 1 27 0 1851 171 0 7 chr11 16445287 16445592 -132337880 + AluJb SINE Alu 1 303 -9 183 80 0 0 chr11 16445797 16445822 -132337650 + (A)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr11 16447278 16447301 -132336171 + AT_rich Low_complexity Low_complexity 1 23 0 607 206 8 23 chr11 16447305 16447436 -132336036 + FLAM_A SINE Alu 1 129 -4 879 238 98 7 chr11 16447443 16447751 -132335721 - MLT1K LTR MaLR -48 540 176 2407 78 3 0 chr11 16448326 16448633 -132334839 - AluSq SINE Alu -5 308 1 231 294 105 49 chr11 16448861 16449004 -132334468 - L2 LINE L2 -3 3269 3119 2315 116 20 67 chr11 16450074 16450522 -132332950 + L1MA5 LINE L1 5870 6296 -4 324 157 0 0 chr11 16451521 16451572 -132331900 - L2 LINE L2 -2 3311 3261 23 0 0 0 chr11 16454337 16454360 -132329112 + AT_rich Low_complexity Low_complexity 1 23 0 436 271 83 38 chr11 16457426 16457559 -132325913 + MER91A DNA MER1_type 12 150 -46 1034 309 57 28 chr11 16457663 16458181 -132325291 + L2 LINE L2 2559 3088 -225 186 103 0 0 chr11 16458177 16458206 -132325266 + L2 LINE L2 3285 3313 0 * 357 319 0 11 chr11 16458251 16458345 -132325127 + L2 LINE L2 3221 3313 0 237 371 131 24 chr11 16458364 16459064 -132324408 - L2 LINE L2 -834 2480 1706 253 347 20 0 chr11 16459208 16459306 -132324166 - MIR SINE MIR -66 142 43 258 281 31 16 chr11 16460068 16460132 -132323340 + MIR SINE MIR 14 78 -184 * 514 208 42 0 chr11 16460125 16460221 -132323251 - L2 LINE L2 0 3313 3214 3108 170 7 12 chr11 16460221 16460786 -132322686 + L1PA13 LINE L1 4084 4645 -1501 1516 81 0 5 chr11 16460786 16460983 -132322489 + AluY SINE Alu 1 196 -115 7619 30 10 0 chr11 16461083 16462490 -132320982 - L1PA4 LINE L1 -296 5859 4441 5742 92 16 4 chr11 16462477 16463293 -132320179 + L1PA13 LINE L1 5336 6161 -2 * 487 252 69 8 chr11 16463371 16463502 -132319970 + MIR SINE MIR 64 202 -60 306 327 19 82 chr11 16463525 16463733 -132319739 + L2 LINE L2 2861 3055 -217 206 225 0 0 chr11 16463780 16463820 -132319652 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 955 230 148 89 chr11 16463820 16463867 -132319605 + L2 LINE L2 2584 2627 -686 1951 176 17 6 chr11 16463867 16464226 -132319246 + MLT1A1 LTR MaLR 3 365 0 955 230 148 89 chr11 16464226 16464841 -132318631 + L2 LINE L2 2627 3286 -27 23 33 0 0 chr11 16465914 16465944 -132317528 + AT_rich Low_complexity Low_complexity 1 30 0 402 258 62 16 chr11 16466069 16466197 -132317275 - MER5A DNA MER1_type 0 189 56 26 0 0 0 chr11 16467546 16467572 -132315900 + AT_rich Low_complexity Low_complexity 1 26 0 200 329 55 0 chr11 16467827 16467900 -132315572 - L2 LINE L2 -39 3274 3198 305 288 88 44 chr11 16468037 16468197 -132315275 + L2 LINE L2 3147 3313 0 22 35 0 0 chr11 16468307 16468336 -132315136 + AT_rich Low_complexity Low_complexity 1 29 0 1047 127 34 54 chr11 16468968 16469173 -132314299 + MLT1C LTR MaLR 267 467 0 195 323 121 46 chr11 16469276 16469576 -132313896 + L2 LINE L2 1635 1911 -1403 373 175 29 39 chr11 16469576 16469679 -132313793 + L1PA5 LINE L1 6052 6153 -1 195 323 121 46 chr11 16469679 16469982 -132313490 + L2 LINE L2 1911 2283 -1031 791 302 28 20 chr11 16469989 16470237 -132313235 + MIR SINE MIR 1 250 -12 1209 191 24 65 chr11 16470433 16470727 -132312745 + AluJo SINE Alu 1 282 -30 22 0 0 0 chr11 16470727 16470749 -132312723 + AT_rich Low_complexity Low_complexity 1 22 0 313 316 123 9 chr11 16470851 16470965 -132312507 + L2 LINE L2 3145 3271 -1 339 224 26 0 chr11 16471111 16471187 -132312285 - MIR SINE MIR -6 256 179 * 692 276 14 19 chr11 16471165 16471379 -132312093 + MIR SINE MIR 49 261 -1 258 152 0 0 chr11 16471574 16471620 -132311852 + MER4B-int LTR ERV1 1146 1191 -5567 21 0 0 0 chr11 16471645 16471666 -132311806 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr11 16474717 16474754 -132308718 + AT_rich Low_complexity Low_complexity 1 37 0 33 43 0 0 chr11 16475983 16476030 -132307442 + AT_rich Low_complexity Low_complexity 1 47 0 210 399 63 18 chr11 16476436 16476659 -132306813 + L2 LINE L2 2838 3070 -202 191 222 0 0 chr11 16476810 16476855 -132306617 + L2 LINE L2 3228 3272 0 218 298 18 0 chr11 16476890 16476947 -132306525 - L2 LINE L2 -5 3267 3210 22 56 0 0 chr11 16476993 16477029 -132306443 + AT_rich Low_complexity Low_complexity 1 36 0 698 187 8 0 chr11 16477029 16477163 -132306309 - L1PA16 LINE L1 -4 6162 6028 2373 88 0 0 chr11 16477193 16477490 -132305982 + AluSc SINE Alu 3 299 -10 322 244 42 14 chr11 16479650 16479781 -132303691 + GA-rich Low_complexity Low_complexity 1 134 0 708 189 6 17 chr11 16480330 16480510 -132302962 + CT-rich Low_complexity Low_complexity 3 180 0 27 49 0 0 chr11 16480641 16480682 -132302790 + AT_rich Low_complexity Low_complexity 1 41 0 445 269 113 31 chr11 16480714 16480874 -132302598 + MIR SINE MIR 20 192 -70 318 169 0 0 chr11 16480883 16480948 -132302524 + CT-rich Low_complexity Low_complexity 2 66 0 212 143 0 0 chr11 16480971 16481006 -132302466 + (GA)n Simple_repeat Simple_repeat 2 36 0 1163 233 25 33 chr11 16482260 16482535 -132300937 + AluJo SINE Alu 10 282 -30 2516 55 0 0 chr11 16482782 16483093 -132300379 - AluY SINE Alu 0 311 1 21 0 0 0 chr11 16483101 16483122 -132300350 + AT_rich Low_complexity Low_complexity 1 21 0 1801 158 11 3 chr11 16484455 16484740 -132298732 + AluJb SINE Alu 3 289 -23 373 161 47 29 chr11 16485258 16485516 -132297956 + AluJo SINE Alu 1 314 0 21 36 0 0 chr11 16488601 16488629 -132294843 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 16488643 16488664 -132294808 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr11 16488775 16488801 -132294671 + AT_rich Low_complexity Low_complexity 1 26 0 25 83 0 0 chr11 16488887 16488947 -132294525 + AT_rich Low_complexity Low_complexity 1 60 0 23 0 0 0 chr11 16489664 16489687 -132293785 + AT_rich Low_complexity Low_complexity 1 23 0 237 300 285 15 chr11 16490998 16491198 -132292274 - MIR SINE MIR -6 256 3 249 108 0 0 chr11 16491511 16491548 -132291924 + (ATG)n Simple_repeat Simple_repeat 2 38 0 220 343 250 0 chr11 16491754 16491862 -132291610 - L2 LINE L2 -1 3271 3137 250 87 22 0 chr11 16491908 16491954 -132291518 + L1MA3 LINE L1 6259 6305 0 235 185 54 109 chr11 16492104 16492196 -132291276 - MIR SINE MIR 0 262 176 3856 270 53 38 chr11 16492202 16493778 -132289694 + L1MEc LINE L1 201 1800 -4763 279 325 0 32 chr11 16495456 16495579 -132287893 + L2 LINE L2 3191 3309 -4 621 285 30 53 chr11 16496982 16497245 -132286227 - L2 LINE L2 0 3313 3057 232 235 103 15 chr11 16497228 16497296 -132286176 + MIR SINE MIR 159 232 -30 * 207 216 27 0 chr11 16497269 16497306 -132286166 + L2 LINE L2 3210 3247 -25 * 263 192 82 14 chr11 16498170 16498243 -132285229 + GA-rich Low_complexity Low_complexity 3 80 0 21 82 0 0 chr11 16599476 16599525 -132183947 + AT_rich Low_complexity Low_complexity 1 49 0 22 56 0 0 chr11 16600903 16600939 -132182533 + AT_rich Low_complexity Low_complexity 1 36 0 607 204 72 0 chr11 16601838 16601990 -132181482 + L1MEc LINE L1 2274 2436 -3948 1780 156 3 35 chr11 16602098 16602412 -132181060 + AluJo SINE Alu 1 304 -8 477 0 0 0 chr11 16602412 16602465 -132181007 + (TA)n Simple_repeat Simple_repeat 2 54 0 2142 89 0 4 chr11 16603329 16603633 -132179839 - AluSg SINE Alu 0 303 1 762 215 45 25 chr11 16603820 16604020 -132179452 + L1MB5 LINE L1 5963 6166 -8 208 247 68 68 chr11 16606895 16606968 -132176504 + L2 LINE L2 3237 3309 -4 351 312 145 51 chr11 16607287 16607521 -132175951 - MIR SINE MIR 0 262 7 209 360 54 27 chr11 16607530 16607641 -132175831 - L2 LINE L2 -16 3256 3143 198 372 54 16 chr11 16607948 16608077 -132175395 + L2 LINE L2 2640 2773 -541 180 304 231 23 chr11 16608378 16608724 -132174748 - L2 LINE L2 -924 2390 1973 2373 89 0 3 chr11 16609050 16609354 -132174118 - AluY SINE Alu -8 303 1 7714 95 11 2 chr11 16609359 16611261 -132172211 - L1PA7 LINE L1 0 6154 4235 35829 95 10 32 chr11 16611361 16612956 -132170516 - L1P LINE L1 -802 5344 3715 879 107 0 0 chr11 16612956 16613077 -132170395 - AluY SINE Alu -6 305 185 35829 95 10 32 chr11 16613077 16616815 -132166657 - L1P LINE L1 -2431 3715 12 293 191 0 0 chr11 16616823 16616870 -132166602 + MSTB LTR MaLR 380 426 0 2128 252 112 18 chr11 16616870 16617784 -132165688 + L1MEc LINE L1 3090 4089 -2293 5556 239 73 14 chr11 16617788 16618552 -132164920 + L1M4 LINE L1 2 719 -5823 183 42 0 0 chr11 16618552 16618576 -132164896 + (TTG)n Simple_repeat Simple_repeat 2 25 0 5556 239 73 14 chr11 16618576 16619395 -132164077 + L1M4 LINE L1 719 1679 -4863 3669 59 2 6 chr11 16619506 16619982 -132163490 + L1PA6 LINE L1 5681 6154 0 1998 167 78 0 chr11 16620024 16620395 -132163077 - MSTA LTR MaLR -28 400 1 8342 166 50 31 chr11 16620395 16622015 -132161457 - MSTA-int LTR MaLR 0 1651 1 275 143 0 0 chr11 16622015 16622057 -132161415 - MSTB LTR MaLR 0 426 385 1189 184 16 98 chr11 16622062 16622378 -132161094 + AluJb SINE Alu 12 301 -11 1555 153 88 20 chr11 16622378 16622673 -132160799 - MSTB LTR MaLR -34 392 78 991 99 0 35 chr11 16622677 16622819 -132160653 - AluSq/x SINE Alu -175 137 1 3573 266 74 40 chr11 16622826 16622943 -132160529 - L1MEc LINE L1 -4602 1613 1501 700 195 0 0 chr11 16622943 16623066 -132160406 - FLAM_C SINE Alu -10 123 1 3573 266 74 40 chr11 16623066 16623217 -132160255 - L1MEc LINE L1 -4714 1501 1357 1765 164 32 4 chr11 16623217 16623497 -132159975 - AluJb SINE Alu -22 290 3 3573 266 74 40 chr11 16623497 16624803 -132158669 - L1MEc LINE L1 -4858 1357 38 1812 149 53 0 chr11 16625164 16625446 -132158026 - AluSx SINE Alu -15 297 1 426 263 213 0 chr11 16625940 16626100 -132157372 + MIR SINE MIR 69 262 0 1773 186 3 3 chr11 16626750 16627062 -132156410 + AluJo SINE Alu 1 312 0 336 48 0 0 chr11 16627282 16627324 -132156148 + (TG)n Simple_repeat Simple_repeat 1 42 0 1550 114 122 4 chr11 16627340 16627585 -132155887 - AluSg SINE Alu -36 274 1 271 284 87 0 chr11 16627990 16628117 -132155355 - L1ME4a LINE L1 -195 5926 5789 286 270 0 0 chr11 16628144 16628218 -132155254 - MER116 DNA Mariner -6 74 1 456 272 80 31 chr11 16628218 16628442 -132155030 - L1ME4a LINE L1 -352 5769 5535 1721 187 17 0 chr11 16629481 16629781 -132153691 + AluJo SINE Alu 1 305 -7 2136 152 6 3 chr11 16629998 16630341 -132153131 - MER2 DNA MER2_type 0 344 1 1570 158 9 80 chr11 16630943 16631279 -132152193 + AluSx SINE Alu 1 312 0 425 326 7 54 chr11 16631487 16631634 -132151838 + MIR3 SINE MIR 48 187 -21 207 281 0 62 chr11 16631655 16631690 -132151782 - L2 LINE L2 -4 3268 3237 14899 119 34 16 chr11 16631690 16632587 -132150885 - Tigger1 DNA MER2_type -1 2417 1538 1985 103 88 0 chr11 16632587 16632859 -132150613 + AluSx SINE Alu 1 296 -16 14899 119 34 16 chr11 16632859 16634335 -132149137 - Tigger1 DNA MER2_type -880 1538 1 207 281 0 62 chr11 16634335 16634363 -132149109 - L2 LINE L2 -35 3237 3209 438 299 120 32 chr11 16634384 16634601 -132148871 - MIR SINE MIR -12 250 15 280 256 145 51 chr11 16634653 16634770 -132148702 + MER5A DNA MER1_type 35 162 -27 408 320 89 63 chr11 16635168 16635731 -132147741 - L2 LINE L2 0 3313 2741 1211 264 115 30 chr11 16635733 16636202 -132147270 + LTR33 LTR ERVL 1 509 -12 394 299 140 5 chr11 16636474 16636688 -132146784 + MIR SINE MIR 5 247 -15 1866 54 29 121 chr11 16636871 16637184 -132146288 + AluYb8 SINE Alu 16 299 -19 216 200 0 0 chr11 16638173 16638238 -132145234 + (TA)n Simple_repeat Simple_repeat 1 65 0 21 36 0 0 chr11 16638459 16638487 -132144985 + AT_rich Low_complexity Low_complexity 1 28 0 206 147 0 0 chr11 16639137 16639171 -132144301 + L2 LINE L2 3280 3313 0 247 259 214 18 chr11 16639718 16639830 -132143642 - MIR SINE MIR -12 250 117 * 258 311 0 0 chr11 16639828 16639889 -132143583 + L2 LINE L2 3211 3271 -1 2380 107 0 0 chr11 16640255 16640563 -132142909 + AluSx SINE Alu 1 308 -4 1766 195 0 7 chr11 16640624 16640921 -132142551 + AluJo SINE Alu 3 297 -15 841 232 21 14 chr11 16640922 16641202 -132142270 + L1M4c LINE L1 2017 2298 -4086 22 35 0 0 chr11 16641666 16641695 -132141777 + AT_rich Low_complexity Low_complexity 1 29 0 1986 179 81 0 chr11 16642293 16642467 -132141005 + MSTA LTR MaLR 1 160 -268 1928 159 0 0 chr11 16642467 16642762 -132140710 + AluSx SINE Alu 1 295 -17 1986 179 81 0 chr11 16642762 16642983 -132140489 + MSTA LTR MaLR 160 428 0 485 287 116 6 chr11 16643505 16643669 -132139803 - MIR SINE MIR -30 232 51 1838 306 64 40 chr11 16643674 16644475 -132138997 + L2 LINE L2 1912 2741 -573 1687 163 21 10 chr11 16644475 16644764 -132138708 + AluJb SINE Alu 1 292 -20 1838 306 64 40 chr11 16644764 16644931 -132138541 + L2 LINE L2 2741 2903 -411 5699 97 19 1 chr11 16644952 16645307 -132138165 - L1PB1 LINE L1 0 6151 5804 402 21 0 0 chr11 16645307 16645354 -132138118 + (CA)n Simple_repeat Simple_repeat 1 47 0 5699 97 19 1 chr11 16645354 16645809 -132137663 - L1PB1 LINE L1 -347 5804 5327 603 247 250 44 chr11 16645809 16646153 -132137319 + L2 LINE L2 2898 3312 -1 599 288 46 7 chr11 16646211 16646364 -132137108 - MIR3 SINE MIR -31 177 19 25 31 0 0 chr11 16646717 16646749 -132136723 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr11 16647335 16647358 -132136114 + AT_rich Low_complexity Low_complexity 1 23 0 2598 52 3 0 chr11 16647674 16647981 -132135491 - AluSc SINE Alu -1 308 1 1401 174 54 7 chr11 16648325 16648628 -132134844 + MER33 DNA MER1_type 1 302 -22 1856 162 0 13 chr11 16649183 16649485 -132133987 + AluSg SINE Alu 1 298 -12 720 188 0 15 chr11 16649496 16649629 -132133843 + FLAM_A SINE Alu 3 133 0 1728 216 173 17 chr11 16649756 16650298 -132133174 + L1ME3A LINE L1 5542 6168 -2 232 293 309 0 chr11 16650440 16650563 -132132909 - MIR3 SINE MIR -3 205 45 22 0 0 0 chr11 16651479 16651501 -132131971 + AT_rich Low_complexity Low_complexity 1 22 0 280 264 43 49 chr11 16651820 16651983 -132131489 + L1ME4a LINE L1 5942 6103 -18 794 142 0 57 chr11 16652081 16652222 -132131250 + AluJo SINE Alu 1 133 -169 303 152 42 89 chr11 16652297 16652445 -132131027 - LTR37A LTR ERV1 -2 424 299 1527 172 71 4 chr11 16652873 16653166 -132130306 + AluJo SINE Alu 1 311 0 895 45 0 0 chr11 16653231 16653342 -132130130 + L1P LINE L1 3770 3880 -2266 5247 19 0 0 chr11 16653342 16653938 -132129534 + L1PA3 LINE L1 5560 6155 0 2013 138 25 6 chr11 16654178 16654505 -132128967 + MER41-int LTR ERV1 1 333 -5613 3283 187 118 76 chr11 16654708 16656096 -132127376 - Looper DNA T2_type -64 1494 49 871 202 51 6 chr11 16656237 16656415 -132127057 + MER5A DNA MER1_type 1 186 -3 465 81 0 54 chr11 16657160 16657234 -132126238 + U3 snRNA snRNA 1 70 -147 2339 150 48 0 chr11 16657316 16657729 -132125743 - Tigger2a DNA MER2_type 0 434 2 357 344 122 43 chr11 16657965 16658244 -132125228 - L2 LINE L2 0 3272 2972 431 187 187 66 chr11 16658387 16658569 -132124903 + MER6B DNA MER2_type 4 207 -3 1473 105 76 0 chr11 16658759 16658969 -132124503 - AluSg1 SINE Alu -83 226 1 468 290 85 66 chr11 16659836 16660095 -132123377 + L2 LINE L2 3047 3310 -3 24 0 0 0 chr11 16660289 16660313 -132123159 + AT_rich Low_complexity Low_complexity 1 24 0 964 162 0 42 chr11 16660315 16660482 -132122990 + AluJo SINE Alu 137 296 -6 1712 153 24 30 chr11 16660496 16660791 -132122681 + AluSx SINE Alu 2 294 -18 18186 90 57 6 chr11 16661501 16663252 -132120220 + Charlie3 DNA MER1_type 1 1926 -780 1982 138 7 7 chr11 16663252 16663550 -132119922 + AluSx SINE Alu 1 298 -14 18186 90 57 6 chr11 16663550 16664373 -132119099 + Charlie3 DNA MER1_type 1926 2706 0 1702 124 95 4 chr11 16665129 16665403 -132118069 - AluSx SINE Alu -13 299 1 1882 129 20 7 chr11 16665403 16665697 -132117775 - AluSx SINE Alu -14 298 1 1363 139 180 4 chr11 16665783 16666028 -132117444 - AluJo SINE Alu -14 288 1 1176 160 0 11 chr11 16666365 16666546 -132116926 - AluJo SINE Alu -14 298 120 237 211 0 0 chr11 16666547 16666604 -132116868 + T-rich Low_complexity Low_complexity 1 57 0 765 156 0 57 chr11 16666604 16666745 -132116727 - FLAM_A SINE Alu 0 133 1 195 42 0 0 chr11 16666941 16666965 -132116507 + (ATG)n Simple_repeat Simple_repeat 2 25 0 13754 187 15 9 chr11 16667717 16672704 -132110768 + L1PB1 LINE L1 1789 6866 -1 227 97 0 0 chr11 16672751 16672782 -132110690 - U2 snRNA snRNA -153 35 5 223 195 0 69 chr11 16672802 16672889 -132110583 + (TATAA)n Simple_repeat Simple_repeat 1 81 0 1298 202 4 43 chr11 16673090 16673367 -132110105 - AluJb SINE Alu -18 294 29 693 214 0 0 chr11 16673396 16673513 -132109959 - AluJo SINE Alu -185 117 1 25 31 0 0 chr11 16673575 16673607 -132109865 + AT_rich Low_complexity Low_complexity 1 32 0 234 316 0 0 chr11 16673621 16673697 -132109775 - HAL1 LINE L1 -941 1566 1491 293 282 12 37 chr11 16674512 16674675 -132108797 - L1MEd LINE L1 -4905 1214 1056 1039 113 80 13 chr11 16674758 16674909 -132108563 + FRAM SINE Alu 1 161 -15 2197 108 3 0 chr11 16675011 16675299 -132108173 - AluSc SINE Alu -20 289 1 5252 137 42 41 chr11 16675720 16676788 -132106684 - L1MC2 LINE L1 -8 6336 5268 285 308 0 0 chr11 16676793 16676900 -132106572 - L1MB8 LINE L1 -281 5897 5791 760 259 40 39 chr11 16676986 16677351 -132106121 - L1MB8 LINE L1 -577 5589 5221 2516 51 0 0 chr11 16677351 16677645 -132105827 + AluY SINE Alu 1 294 -17 760 259 40 39 chr11 16677645 16677684 -132105788 - L1MB8 LINE L1 -945 5221 5184 2519 222 41 11 chr11 16677845 16678556 -132104916 - L1M4 LINE L1 -867 5348 4617 4371 262 71 12 chr11 16678559 16679516 -132103956 - L1MEc LINE L1 -2499 3716 2817 1856 163 36 11 chr11 16679516 16679872 -132103600 + MLT1A1 LTR MaLR 1 365 0 4371 262 71 12 chr11 16679872 16680470 -132103002 - L1MEc LINE L1 -3398 2817 2256 1508 210 0 7 chr11 16680470 16680746 -132102726 - AluJo SINE Alu -10 302 29 4371 262 71 12 chr11 16680746 16681392 -132102080 - L1MEc LINE L1 -3959 2256 1414 954 215 66 134 chr11 16681387 16681624 -132101848 + L1M4 LINE L1 3705 3957 -2189 * 1348 192 42 31 chr11 16681624 16681911 -132101561 - AluJo SINE Alu -18 294 5 954 215 66 134 chr11 16681911 16682248 -132101224 + L1M4 LINE L1 3957 4223 -1923 1723 181 27 0 chr11 16682248 16682540 -132100932 - AluJo SINE Alu -12 300 1 954 215 66 134 chr11 16682540 16682679 -132100793 + L1M4 LINE L1 4223 4370 -1776 21805 136 22 24 chr11 16682883 16682918 -132100554 + L1MB7 LINE L1 18 52 -7513 579 191 124 0 chr11 16682918 16683066 -132100406 + FLAM_C SINE Alu 1 161 0 21805 136 22 24 chr11 16683066 16685448 -132098024 + L1MB7 LINE L1 52 2437 -5128 1825 157 35 0 chr11 16685448 16685735 -132097737 + AluSx SINE Alu 1 297 -15 21805 136 22 24 chr11 16685735 16685881 -132097591 + L1MB7 LINE L1 2437 2582 -4983 1364 176 66 70 chr11 16685881 16686182 -132097290 + AluJb SINE Alu 3 302 -10 21805 136 22 24 chr11 16686182 16686901 -132096571 + L1MB7 LINE L1 2582 3301 -4264 180 111 0 0 chr11 16686901 16686928 -132096544 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 21805 136 22 24 chr11 16686928 16687022 -132096450 + L1MB7 LINE L1 3301 3394 -4171 1873 128 14 4 chr11 16687022 16687303 -132096169 + AluSx SINE Alu 7 290 -22 21805 136 22 24 chr11 16687303 16688258 -132095214 + L1MB7 LINE L1 3394 4348 -3217 421 164 0 0 chr11 16688258 16688331 -132095141 + L1PA12 LINE L1 159 231 -7350 8857 219 121 46 chr11 16688333 16691300 -132092172 + L1PA12 LINE L1 694 3436 -4148 2071 149 28 22 chr11 16691300 16691662 -132091810 - THE1B LTR MaLR 0 364 1 8857 219 121 46 chr11 16691662 16691917 -132091555 + L1PA12 LINE L1 3436 3670 -3914 615 148 0 0 chr11 16691917 16692018 -132091454 + AluSg/x SINE Alu 202 302 -8 8857 219 121 46 chr11 16692018 16692832 -132090640 + L1PA12 LINE L1 3670 4421 -3163 2572 56 0 3 chr11 16692832 16693134 -132090338 + AluY SINE Alu 1 301 -10 8857 219 121 46 chr11 16693134 16693510 -132089962 + L1PA12 LINE L1 4421 5614 -1970 509 147 0 0 chr11 16693510 16693585 -132089887 + AluS SINE Alu 1 75 -238 1995 139 0 20 chr11 16693593 16693895 -132089577 + AluSx SINE Alu 1 296 -16 305 159 148 0 chr11 16693897 16693985 -132089487 + L1MB7 LINE L1 5588 5688 -1877 590 198 19 116 chr11 16694086 16694344 -132089128 + MER41-int LTR ERV1 406 638 -5308 960 164 106 14 chr11 16694368 16694575 -132088897 + MSTA LTR MaLR 203 428 0 6112 100 3 21 chr11 16694586 16695110 -132088362 + L1PA14 LINE L1 4797 5329 -832 2088 138 7 0 chr11 16695110 16695400 -132088072 + AluSx SINE Alu 1 292 -20 6112 100 3 21 chr11 16695400 16696236 -132087236 + L1PA14 LINE L1 5329 6161 0 1769 120 101 0 chr11 16696267 16696543 -132086929 + AluSx SINE Alu 1 304 -8 317 154 393 26 chr11 16696992 16697109 -132086363 + MIR SINE MIR 2 161 -101 890 210 28 17 chr11 16697244 16697420 -132086052 + MER5A DNA MER1_type 12 189 0 3260 129 18 27 chr11 16697562 16697982 -132085490 + L1MB7 LINE L1 6866 7281 -322 1633 159 94 4 chr11 16697982 16698258 -132085214 + AluJb SINE Alu 1 301 -11 3260 129 18 27 chr11 16698258 16698435 -132085037 + L1MB7 LINE L1 7281 7458 -145 693 133 12 91 chr11 16698815 16698867 -132084605 + L1MB8 LINE L1 6022 6077 -101 2079 121 7 26 chr11 16698867 16699172 -132084300 + AluSx SINE Alu 1 299 -13 693 133 12 91 chr11 16699172 16699284 -132084188 + L1MB8 LINE L1 6077 6173 -5 309 230 9 35 chr11 16699574 16699687 -132083785 + L1ME4a LINE L1 5967 6076 -45 500 256 19 0 chr11 16700006 16700162 -132083310 - L1MC4a LINE L1 -1900 5908 5750 1769 167 3 29 chr11 16700170 16700476 -132082996 - AluSx SINE Alu -12 300 3 19069 100 11 5 chr11 16700722 16702770 -132080702 + L1P3 LINE L1 700 2787 -3674 182 61 0 30 chr11 16702770 16702803 -132080669 + (TA)n Simple_repeat Simple_repeat 2 33 0 19069 100 11 5 chr11 16702803 16704544 -132078928 + L1P3 LINE L1 2787 4515 -1946 180 0 0 0 chr11 16704656 16704676 -132078796 + (A)n Simple_repeat Simple_repeat 1 20 0 467 231 111 60 chr11 16706296 16706495 -132076977 + MIR SINE MIR 48 256 -6 1612 145 35 35 chr11 16706525 16706807 -132076665 - AluJo SINE Alu -30 282 1 215 300 89 58 chr11 16706997 16707187 -132076285 + L2 LINE L2 1789 1984 -1330 592 224 164 5 chr11 16707228 16707429 -132076043 + Charlie2 DNA MER1_type 91 323 -2539 652 183 162 35 chr11 16707443 16707672 -132075800 + Charlie2 DNA MER1_type 1887 2144 -718 2165 129 0 0 chr11 16707885 16708180 -132075292 - AluSq SINE Alu -18 295 1 637 153 65 40 chr11 16708389 16708513 -132074959 - L2 LINE L2 -14 3299 3173 192 77 0 0 chr11 16708527 16708553 -132074919 + (CA)n Simple_repeat Simple_repeat 2 27 0 309 210 100 40 chr11 16708567 16708667 -132074805 + L1MCa LINE L1 1959 2064 -4362 921 103 0 8 chr11 16708683 16708800 -132074672 - AluSc SINE Alu -187 122 7 197 81 0 27 chr11 16708804 16708841 -132074631 + (TA)n Simple_repeat Simple_repeat 2 37 0 780 271 133 32 chr11 16708887 16709264 -132074208 - L2 LINE L2 -445 2869 2455 1051 180 0 0 chr11 16709264 16709425 -132074047 + FRAM SINE Alu 1 158 -18 2024 99 33 7 chr11 16709430 16709755 -132073717 + AluSc SINE Alu 1 332 0 2010 116 4 14 chr11 16710522 16710797 -132072675 + AluSp SINE Alu 1 272 -41 1017 147 51 0 chr11 16711187 16711364 -132072108 + MER20 DNA MER1_type 33 218 -1 * 1627 224 102 12 chr11 16711364 16711763 -132071709 + Zaphod DNA AcHobo 9 443 -3588 710 197 34 0 chr11 16711848 16711965 -132071507 - FLAM_A SINE Alu -12 121 1 230 284 11 32 chr11 16711974 16712069 -132071403 + L1MEd LINE L1 1165 1257 -4862 1769 163 10 13 chr11 16712101 16712402 -132071070 + AluJo SINE Alu 11 310 -2 1777 159 13 19 chr11 16712539 16712853 -132070619 - AluJb SINE Alu 0 312 1 273 229 0 57 chr11 16712946 16713051 -132070421 + L1M2 LINE L1 2429 2527 -4322 355 354 19 15 chr11 16713068 16713274 -132070198 + L1ME3A LINE L1 156 362 -6034 975 181 0 6 chr11 16713704 16713870 -132069602 + FRAM SINE Alu 1 165 -1 1469 267 61 38 chr11 16713883 16714466 -132069006 + L1ME3A LINE L1 4550 5155 -1060 2219 123 7 0 chr11 16714466 16714767 -132068705 - AluSq SINE Alu -10 303 1 1469 267 61 38 chr11 16714767 16714918 -132068554 + L1ME3A LINE L1 5155 5301 -914 360 262 123 63 chr11 16715153 16715405 -132068067 + LTR16C LTR ERVL 214 480 -11 305 301 80 0 chr11 16715418 16715635 -132067837 + L1ME3A LINE L1 5334 5578 -661 1267 232 94 71 chr11 16715636 16716158 -132067314 - MLT1F LTR MaLR -8 534 1 646 255 29 95 chr11 16716160 16716635 -132066837 + L1ME3A LINE L1 5582 6024 -215 237 274 62 26 chr11 16716790 16716903 -132066569 + L1ME3A LINE L1 6115 6231 -8 2417 92 0 7 chr11 16716911 16717217 -132066255 + AluSx SINE Alu 1 304 -8 424 264 136 7 chr11 16718267 16718407 -132065065 - MIR SINE MIR -10 252 95 399 196 9 89 chr11 16718408 16718520 -132064952 + MIR SINE MIR 160 262 0 609 271 32 7 chr11 16718732 16718887 -132064585 - L2 LINE L2 0 3313 3155 870 214 68 44 chr11 16718939 16719187 -132064285 - MIR SINE MIR -3 259 6 329 286 210 8 chr11 16719948 16720067 -132063405 + MIR SINE MIR 12 154 -108 290 288 46 46 chr11 16720099 16720252 -132063220 - MLT1J2 LTR MaLR -28 422 270 * 310 307 24 48 chr11 16720248 16720414 -132063058 - MLT1I LTR MaLR -169 240 79 185 284 54 40 chr11 16723628 16723702 -132059770 + MER5A DNA MER1_type 55 129 -60 278 26 26 0 chr11 16724159 16724198 -132059274 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 2378 88 3 3 chr11 16725737 16726033 -132057439 + AluSp SINE Alu 1 296 -17 597 304 100 5 chr11 16727600 16727820 -132055652 + MIR SINE MIR 12 252 -10 369 230 23 0 chr11 16728175 16728262 -132055210 + MIR SINE MIR 53 141 -67 591 132 0 0 chr11 16729819 16729933 -132053539 + (CA)n Simple_repeat Simple_repeat 2 115 0 379 297 54 0 chr11 16731674 16731785 -132051687 - MIR SINE MIR -133 129 13 203 315 77 23 chr11 16731846 16731976 -132051496 + L2 LINE L2 2763 2899 -415 193 363 12 12 chr11 16732069 16732149 -132051323 + L2 LINE L2 3193 3272 0 438 192 0 50 chr11 16732536 16732635 -132050837 + L3b LINE CR1 1291 1384 -199 429 274 9 0 chr11 16733172 16733278 -132050194 - L2 LINE L2 -8 3264 3158 296 214 36 89 chr11 16733673 16733785 -132049687 - MIR SINE MIR -76 186 81 748 211 106 10 chr11 16738121 16738320 -132045152 + MIR SINE MIR 24 241 -21 444 256 21 117 chr11 16740130 16740505 -132042967 + L1ME3A LINE L1 5811 6149 -21 1076 147 0 0 chr11 16740526 16740683 -132042789 - FRAM SINE Alu -16 160 4 248 318 91 30 chr11 16740855 16740987 -132042485 - MIR3 SINE MIR -68 140 1 209 347 25 50 chr11 16741651 16741772 -132041700 + MIR SINE MIR 71 188 -74 484 234 0 0 chr11 16741970 16742064 -132041408 + MIR3 SINE MIR 101 194 -14 1248 180 19 45 chr11 16743026 16743258 -132040214 + L1MB2 LINE L1 5902 6128 -43 2041 141 10 0 chr11 16743258 16743557 -132039915 + AluSx SINE Alu 1 302 -10 1248 180 19 45 chr11 16743557 16743591 -132039881 + L1MB2 LINE L1 6128 6161 -10 2378 102 3 13 chr11 16743592 16743907 -132039565 - AluSq SINE Alu -1 312 1 1886 145 25 41 chr11 16744060 16744402 -132039070 + L1MB7 LINE L1 5793 6130 -54 1702 175 10 38 chr11 16744402 16744716 -132038756 - AluJo SINE Alu -7 305 1 1886 145 25 41 chr11 16744716 16744766 -132038706 + L1MB7 LINE L1 6130 6179 -5 27 29 0 0 chr11 16744786 16744820 -132038652 + AT_rich Low_complexity Low_complexity 1 34 0 232 269 0 0 chr11 16745178 16745230 -132038242 + L2 LINE L2 3220 3271 -1 816 270 83 40 chr11 16746277 16746732 -132036740 + L1ME4a LINE L1 5353 5827 -294 692 189 31 6 chr11 16746747 16746906 -132036566 + MER3 DNA MER1_type 3 165 -44 220 274 20 0 chr11 16747843 16747894 -132035578 + L2 LINE L2 3213 3264 -8 388 288 39 33 chr11 16749695 16749848 -132033624 + MIR SINE MIR 43 196 -66 2334 112 0 0 chr11 16750296 16750592 -132032880 - AluSg SINE Alu -12 298 3 2300 101 0 0 chr11 16753259 16753567 -132029905 + AluSg SINE Alu 2 309 -1 326 326 29 40 chr11 16753724 16753899 -132029573 + L2 LINE L2 3100 3272 0 1103 156 0 6 chr11 16755516 16755695 -132027777 - MER5B DNA MER1_type 0 178 1 860 214 44 11 chr11 16755703 16755885 -132027587 - MER5A DNA MER1_type 0 189 2 460 282 46 75 chr11 16755897 16756071 -132027401 + MER5B DNA MER1_type 4 172 -6 382 288 106 24 chr11 16756085 16756255 -132027217 - MER5A DNA MER1_type 0 189 6 415 291 49 39 chr11 16756643 16756846 -132026626 + MIR SINE MIR 51 255 -7 429 285 199 0 chr11 16757427 16757578 -132025894 - L3 LINE CR1 -103 1474 1294 259 307 23 0 chr11 16757891 16757979 -132025493 + MLT1K LTR MaLR 499 588 0 364 304 117 9 chr11 16758040 16758270 -132025202 - L3 LINE CR1 -473 1104 850 345 322 137 0 chr11 16758581 16758764 -132024708 + MIR SINE MIR 28 235 -27 213 260 40 30 chr11 16762343 16762443 -132021029 + MIR SINE MIR 39 139 -69 1718 166 38 0 chr11 16763277 16763567 -132019905 - AluSx SINE Alu -11 301 1 421 193 36 0 chr11 16763756 16763839 -132019633 + MIR SINE MIR 70 155 -107 671 216 70 38 chr11 16764270 16764455 -132019017 + MIR SINE MIR 72 262 0 248 167 0 0 chr11 16765775 16765817 -132017655 - MER96 DNA MER1_type? -32 143 102 587 260 35 1 chr11 16765894 16766062 -132017410 + MIR SINE MIR 16 192 -30 2248 103 0 0 chr11 16766544 16766855 -132016617 - AluY SINE Alu 0 311 1 2089 94 0 0 chr11 16766873 16767150 -132016322 - AluSx SINE Alu -35 277 1 203 289 19 19 chr11 16767240 16767292 -132016180 + MIR SINE MIR 20 71 -191 229 245 0 0 chr11 16767307 16767356 -132016116 - MIR SINE MIR -5 257 209 886 145 10 105 chr11 16767364 16767429 -132016043 + MER5A DNA MER1_type 9 79 -110 2169 121 57 25 chr11 16767429 16767833 -132015639 + L1MA7 LINE L1 5875 6291 0 886 145 10 105 chr11 16767833 16767967 -132015505 + MER5A DNA MER1_type 79 189 0 419 228 59 44 chr11 16767999 16768135 -132015337 + MIR SINE MIR 71 208 -54 234 91 0 0 chr11 16770254 16770287 -132013185 + (A)n Simple_repeat Simple_repeat 1 33 0 635 197 11 112 chr11 16770499 16770677 -132012795 + MER5B DNA MER1_type 5 164 -14 197 277 43 0 chr11 16770680 16770727 -132012745 - MER5B DNA MER1_type 0 178 130 1590 168 10 47 chr11 16770735 16771062 -132012410 - AluJo SINE Alu 0 316 1 417 225 0 22 chr11 16771063 16771152 -132012320 + MER5B DNA MER1_type 35 121 -57 223 287 178 0 chr11 16771188 16771317 -132012155 + L2 LINE L2 2168 2319 -995 373 189 176 40 chr11 16771409 16771557 -132011915 + L2 LINE L2 2285 2452 -862 3248 85 9 0 chr11 16771564 16772010 -132011462 + L1MA3 LINE L1 5696 6145 -160 576 182 68 61 chr11 16772010 16772142 -132011330 + AluJo SINE Alu 2 134 -178 901 115 29 9 chr11 16772142 16772291 -132011181 + L1MA3 LINE L1 6123 6279 -33 448 298 279 13 chr11 16772291 16772603 -132010869 + L2 LINE L2 2447 2841 -473 476 311 81 18 chr11 16773592 16773814 -132009658 + MIR SINE MIR 15 250 -12 593 318 71 62 chr11 16774367 16774773 -132008699 + L2 LINE L2 2863 3272 0 560 302 73 6 chr11 16775053 16775232 -132008240 - MIR SINE MIR -70 192 2 2751 107 3 0 chr11 16775893 16776267 -132007205 + THE1C LTR MaLR 1 375 0 638 244 114 51 chr11 16776418 16776767 -132006705 + MLT1K LTR MaLR 30 520 -68 1415 147 33 62 chr11 16776767 16777073 -132006399 - AluJo SINE Alu -13 299 3 638 244 114 51 chr11 16777073 16777145 -132006327 + MLT1K LTR MaLR 520 586 -2 1720 125 4 0 chr11 16777299 16777547 -132005925 + AluSx SINE Alu 46 294 -18 1583 192 0 13 chr11 16777728 16778036 -132005436 - AluJo SINE Alu -8 304 1 181 323 52 21 chr11 16778437 16778533 -132004939 - L2 LINE L2 -7 3306 3208 791 231 99 24 chr11 16779390 16779602 -132003870 + MIR SINE MIR 24 251 -11 836 292 92 22 chr11 16779610 16780065 -132003407 + MLT1J LTR MaLR 25 511 0 227 308 65 0 chr11 16781524 16781631 -132001841 - MIR SINE MIR -6 256 143 597 103 0 0 chr11 16781650 16781728 -132001744 + AluS SINE Alu 2 79 -233 261 0 0 0 chr11 16781729 16781758 -132001714 + (TA)n Simple_repeat Simple_repeat 2 30 0 2081 121 16 0 chr11 16781760 16782067 -132001405 - AluSx SINE Alu 0 312 1 1894 147 0 3 chr11 16782749 16783042 -132000430 + AluJb SINE Alu 1 292 -20 521 246 171 37 chr11 16783343 16783530 -131999942 - MIR SINE MIR -20 242 31 777 291 85 66 chr11 16783679 16784197 -131999275 + MLT1K LTR MaLR 61 588 0 2181 125 0 0 chr11 16784525 16784887 -131998585 - AluSx SINE Alu 0 362 1 436 288 14 7 chr11 16785112 16785251 -131998221 - MER117 DNA MER1_type -56 141 2 452 273 98 44 chr11 16785908 16785989 -131997483 + L1MC4a LINE L1 5297 5372 -2436 1500 186 0 23 chr11 16785989 16786295 -131997177 + AluJo SINE Alu 1 299 -13 452 273 98 44 chr11 16786295 16786452 -131997020 + L1MC4a LINE L1 5372 5558 -2250 2268 64 34 0 chr11 16786452 16786748 -131996724 - AluY SINE Alu -5 306 1 452 273 98 44 chr11 16786748 16786823 -131996649 + L1MC4a LINE L1 5558 5628 -2180 327 320 50 10 chr11 16786889 16786989 -131996483 + L1MC4a LINE L1 5768 5871 -1937 34 72 0 0 chr11 16787142 16787211 -131996261 + AT_rich Low_complexity Low_complexity 1 69 0 250 178 0 27 chr11 16787224 16787265 -131996207 + (TA)n Simple_repeat Simple_repeat 1 41 -30 1861 124 70 33 chr11 16787265 16787595 -131995877 - MER2 DNA MER2_type -1 343 2 250 178 0 27 chr11 16787595 16787626 -131995846 + (TA)n Simple_repeat Simple_repeat 41 71 0 285 290 270 28 chr11 16787698 16787950 -131995522 + L3 LINE CR1 344 656 -921 245 250 58 0 chr11 16787972 16788024 -131995448 - L2 LINE L2 0 3272 3218 2127 89 7 4 chr11 16788041 16788343 -131995129 + AluSq SINE Alu 1 303 0 1071 85 0 179 chr11 16790017 16790252 -131993220 + 7SK RNA RNA 1 193 0 207 0 0 0 chr11 16790358 16790381 -131993091 + (A)n Simple_repeat Simple_repeat 1 23 0 476 241 102 24 chr11 16790550 16790716 -131992756 - MIR SINE MIR -10 252 74 892 142 51 71 chr11 16790720 16790917 -131992555 + L2 LINE L2 3120 3312 -1 206 208 75 19 chr11 16790905 16790958 -131992514 - MIR SINE MIR -135 73 18 * 1896 139 11 0 chr11 16791424 16791730 -131991742 + AluSx SINE Alu 1 309 0 745 316 157 30 chr11 16792650 16793108 -131990364 - L2 LINE L2 -12 3301 2902 1761 157 4 0 chr11 16793108 16793433 -131990039 - AluJb SINE Alu 0 326 1 745 316 157 30 chr11 16793433 16793767 -131989705 - L2 LINE L2 -411 2902 2395 1975 140 0 0 chr11 16793769 16794077 -131989395 + AluSx SINE Alu 1 308 -4 192 77 0 0 chr11 16794085 16794111 -131989361 + (GAGAA)n Simple_repeat Simple_repeat 5 30 0 789 241 65 49 chr11 16794151 16794396 -131989076 + MIR SINE MIR 8 256 -6 510 273 96 120 chr11 16794692 16794845 -131988627 - L2 LINE L2 -159 3113 2958 2348 56 13 0 chr11 16794845 16795147 -131988325 - AluY SINE Alu -5 306 1 510 273 96 120 chr11 16795147 16795307 -131988165 - L2 LINE L2 -314 2958 2796 2098 106 0 39 chr11 16795307 16795618 -131987854 + AluSq SINE Alu 5 303 -10 510 273 96 120 chr11 16795618 16795751 -131987721 - L2 LINE L2 -476 2796 2624 222 292 0 0 chr11 16795751 16795799 -131987673 - MIR SINE MIR -3 259 212 510 273 96 120 chr11 16795799 16795888 -131987584 - L2 LINE L2 -648 2624 2534 222 398 39 19 chr11 16795980 16796083 -131987389 + L2 LINE L2 3153 3257 -15 1545 214 104 3 chr11 16796142 16796525 -131986947 - Charlie4a DNA MER1_type 0 508 87 279 213 70 98 chr11 16797390 16797543 -131985929 + MIR SINE MIR 42 184 -62 2186 113 3 0 chr11 16799192 16799502 -131983970 - AluSq SINE Alu -2 311 1 22 0 0 0 chr11 16800334 16800356 -131983116 + AT_rich Low_complexity Low_complexity 1 22 0 643 202 0 0 chr11 16800831 16800945 -131982527 + FLAM_C SINE Alu 15 128 -15 219 349 0 0 chr11 16801196 16801262 -131982210 + L2 LINE L2 2994 3059 -213 293 279 131 16 chr11 16801778 16801900 -131981572 + L2 LINE L2 3137 3272 0 312 322 56 56 chr11 16802031 16802245 -131981227 - L2 LINE L2 -788 2526 2313 297 282 47 57 chr11 16803329 16803484 -131979988 + MIR SINE MIR 40 190 -60 2062 106 0 0 chr11 16805452 16805780 -131977692 - AluSx SINE Alu 0 328 1 334 244 76 17 chr11 16805829 16805948 -131977524 - L1ME4a LINE L1 -29 6092 5967 2313 77 3 0 chr11 16806257 16806555 -131976917 - AluSq SINE Alu -14 299 1 476 337 57 29 chr11 16807024 16807374 -131976098 - MARNA DNA Mariner -179 407 48 319 330 26 0 chr11 16807272 16807387 -131976085 + MARNA DNA Mariner 437 554 -32 * 360 292 183 0 chr11 16808296 16808433 -131975039 - MIR SINE MIR -13 249 88 266 323 103 41 chr11 16808558 16808753 -131974719 + MIR SINE MIR 12 218 -44 613 213 47 8 chr11 16809007 16809134 -131974338 + AluSq/x SINE Alu 2 133 -180 1404 172 60 0 chr11 16809144 16809411 -131974061 + AluSx SINE Alu 1 283 -29 314 294 130 14 chr11 16811612 16811758 -131971714 + L3b LINE CR1 1113 1275 -308 1083 194 108 0 chr11 16811878 16812110 -131971362 + MIR SINE MIR 2 258 -4 23 0 0 0 chr11 16812136 16812159 -131971313 + AT_rich Low_complexity Low_complexity 1 23 0 2765 96 6 3 chr11 16812250 16812613 -131970859 + THE1B LTR MaLR 1 364 0 723 272 81 102 chr11 16812619 16813049 -131970423 - L3 LINE CR1 -188 1389 969 1794 145 35 0 chr11 16813205 16813494 -131969978 + AluSx SINE Alu 1 299 -13 534 250 210 55 chr11 16813585 16813618 -131969854 + MLT1I LTR MaLR 4 31 -378 1943 117 28 3 chr11 16813618 16813909 -131969563 - AluSg SINE Alu -12 298 1 534 250 210 55 chr11 16813909 16814090 -131969382 + MLT1I LTR MaLR 31 183 -226 2353 81 0 0 chr11 16814090 16814386 -131969086 + AluSq SINE Alu 1 296 -17 534 250 210 55 chr11 16814386 16814518 -131968954 + MLT1I LTR MaLR 183 405 -4 1097 156 56 0 chr11 16814953 16815132 -131968340 - MER5A DNA MER1_type 0 189 1 305 316 58 7 chr11 16815649 16815788 -131967684 + L2 LINE L2 2425 2570 -744 227 162 0 0 chr11 16816008 16816045 -131967427 + MLT1I LTR MaLR 370 406 -3 363 357 8 0 chr11 16816264 16816390 -131967082 + L2 LINE L2 3184 3310 -3 463 273 169 6 chr11 16817136 16817308 -131966164 + MIR SINE MIR 23 222 -40 599 182 73 21 chr11 16817388 16817580 -131965892 + L1MC5 LINE L1 7729 7930 -31 510 202 9 26 chr11 16818105 16818127 -131965345 - FLAM_A SINE Alu -188 123 102 1919 128 0 42 chr11 16818127 16818440 -131965032 + AluJb SINE Alu 1 300 -12 510 202 9 26 chr11 16818440 16818531 -131964941 - FLAM_A SINE Alu -209 102 12 1917 116 28 0 chr11 16819751 16820036 -131963436 - AluSx SINE Alu -15 297 5 309 271 115 8 chr11 16820176 16820298 -131963174 - L1ME4a LINE L1 -205 5916 5782 1406 165 19 4 chr11 16820306 16820566 -131962906 - AluJo SINE Alu -23 289 26 377 257 114 9 chr11 16820601 16820706 -131962766 - L2 LINE L2 -7 3306 3191 276 305 31 31 chr11 16820772 16820900 -131962572 - L1ME4a LINE L1 -426 5695 5568 2155 114 0 0 chr11 16821440 16821739 -131961733 - AluSx SINE Alu -13 299 1 1850 161 3 0 chr11 16822000 16822298 -131961174 + AluJb SINE Alu 4 302 -10 307 213 0 64 chr11 16822999 16823093 -131960379 - MIR SINE MIR -57 205 118 1792 160 13 3 chr11 16823209 16823516 -131959956 - AluJb SINE Alu -2 310 1 510 281 31 12 chr11 16825564 16825724 -131957748 + MIR SINE MIR 94 256 -6 1413 291 86 27 chr11 16825751 16826376 -131957096 + L2 LINE L2 2316 2977 -337 965 153 0 6 chr11 16826382 16826539 -131956933 - AluSg/x SINE Alu -27 283 128 433 185 22 33 chr11 16827890 16827982 -131955490 + MIR SINE MIR 58 148 -60 389 259 118 22 chr11 16828042 16828177 -131955295 + MIR SINE MIR 36 183 -79 355 250 0 43 chr11 16828600 16828692 -131954780 + MIR3 SINE MIR 121 208 0 522 186 97 0 chr11 16829838 16829951 -131953521 + L2 LINE L2 3189 3312 -1 583 196 7 26 chr11 16830098 16830241 -131953231 + MER69 DNA AcHobo 9 2488 -38 220 226 0 19 chr11 16830593 16830646 -131952826 + (CATATA)n Simple_repeat Simple_repeat 5 56 0 549 311 51 6 chr11 16830689 16830866 -131952606 - MIR SINE MIR -55 207 23 341 265 97 107 chr11 16831671 16831867 -131951605 - L1MC4a LINE L1 -1786 6022 5829 2126 121 0 7 chr11 16832108 16832413 -131951059 + AluSx SINE Alu 1 303 -9 232 250 0 0 chr11 16832674 16832722 -131950750 + Charlie8 DNA MER1_type 2369 2416 -1 1868 140 39 0 chr11 16832801 16833087 -131950385 + AluSx SINE Alu 2 298 -14 1196 138 5 25 chr11 16833119 16833315 -131950157 + AluSq SINE Alu 2 193 -120 2054 108 3 19 chr11 16833452 16833766 -131949706 + AluSx SINE Alu 1 309 -3 2304 90 0 0 chr11 16834170 16834470 -131949002 + AluSx SINE Alu 2 301 -11 227 122 73 0 chr11 16834551 16834592 -131948880 - L2 LINE L2 -1 3312 3269 649 177 103 6 chr11 16834788 16834963 -131948509 + L1M2 LINE L1 1812 2003 -4846 486 151 0 0 chr11 16834963 16835036 -131948436 + AluJ SINE Alu 59 131 -181 248 70 23 0 chr11 16835042 16835085 -131948387 + (TCTCCC)n Simple_repeat Simple_repeat 1 44 0 9660 59 3 86 chr11 16835090 16836599 -131946873 + SVA Other Other 2 1386 0 26 0 0 0 chr11 16836599 16836625 -131946847 + AT_rich Low_complexity Low_complexity 1 26 0 249 74 19 148 chr11 16836655 16836709 -131946763 + AluJb SINE Alu 102 148 -153 1311 183 53 99 chr11 16836711 16837143 -131946329 + LTR7 LTR ERV1 1 412 -38 180 0 0 0 chr11 16837159 16837179 -131946293 + (TA)n Simple_repeat Simple_repeat 2 21 0 804 211 0 12 chr11 16837184 16837355 -131946117 + AluJb SINE Alu 133 301 -11 3417 245 21 4 chr11 16837356 16838278 -131945194 + L1PA15-16 LINE L1 1451 2391 -3755 363 342 26 0 chr11 16838331 16838448 -131945024 - MIR3 SINE MIR -4 204 85 1509 162 35 17 chr11 16838625 16838803 -131944669 - AluJo SINE Alu -7 305 119 252 0 0 0 chr11 16838803 16838831 -131944641 + (CTATT)n Simple_repeat Simple_repeat 5 32 0 1509 162 35 17 chr11 16838831 16838942 -131944530 - AluJo SINE Alu -193 119 11 958 224 138 4 chr11 16839055 16839287 -131944185 + MLT1C LTR MaLR 205 467 0 994 325 88 35 chr11 16839302 16839935 -131943537 + L3 LINE CR1 910 1576 -1 234 0 0 0 chr11 16840144 16840170 -131943302 + (TG)n Simple_repeat Simple_repeat 1 26 0 1419 173 0 82 chr11 16840170 16840508 -131942964 - AluJb SINE Alu 0 313 1 1146 198 25 0 chr11 16840565 16840767 -131942705 - MLT1A1 LTR MaLR -52 313 107 324 231 167 9 chr11 16840848 16840956 -131942516 - MIR SINE MIR -56 206 82 342 272 0 22 chr11 16841106 16841198 -131942274 + MIR3 SINE MIR 104 193 -15 195 314 114 0 chr11 16842281 16842351 -131941121 + MIR SINE MIR 16 93 -115 811 237 45 0 chr11 16842629 16842806 -131940666 - MIR SINE MIR -47 215 31 438 330 20 15 chr11 16843824 16844021 -131939451 + L2 LINE L2 2221 2418 -896 186 312 159 60 chr11 16844173 16844487 -131938985 + L2 LINE L2 2443 2787 -527 253 296 153 35 chr11 16844830 16845001 -131938471 - MIR SINE MIR -70 192 4 514 301 109 5 chr11 16846153 16846346 -131937126 + MIR SINE MIR 35 247 -15 306 294 22 38 chr11 16846443 16846627 -131936845 + L2 LINE L2 2563 2743 -571 499 269 114 5 chr11 16846638 16846857 -131936615 + L1M4 LINE L1 4442 4684 -1462 2243 65 3 7 chr11 16846952 16847245 -131936227 + AluSp SINE Alu 1 292 -21 409 320 76 15 chr11 16847399 16847596 -131935876 - MIR SINE MIR -2 260 52 2216 86 10 7 chr11 16848581 16848884 -131934588 - AluSx SINE Alu -8 304 1 4061 172 35 28 chr11 16849266 16849324 -131934148 - L1MB7 LINE L1 -10 6174 6118 1659 169 7 7 chr11 16849324 16849625 -131933847 + AluJo SINE Alu 1 301 -11 4061 172 35 28 chr11 16849625 16850384 -131933088 - L1MB7 LINE L1 -66 6118 5351 662 272 108 19 chr11 16850412 16850625 -131932847 + MIR SINE MIR 31 262 0 188 284 0 45 chr11 16850965 16851032 -131932440 + L2 LINE L2 3187 3250 -22 278 246 167 37 chr11 16852071 16852286 -131931186 + L1ME4a LINE L1 5692 5934 -187 1704 167 3 11 chr11 16852708 16852995 -131930477 + AluJb SINE Alu 1 285 -27 33 0 0 0 chr11 16852995 16853028 -131930444 + AT_rich Low_complexity Low_complexity 1 33 0 238 269 0 30 chr11 16853595 16853662 -131929810 - MIR SINE MIR -112 150 86 656 162 17 8 chr11 16853841 16853958 -131929514 + MLT1B LTR MaLR 1 118 -272 654 37 0 0 chr11 16853958 16854039 -131929433 + (GGAA)n Simple_repeat Simple_repeat 4 84 0 468 25 113 0 chr11 16854050 16854130 -131929342 + CT-rich Low_complexity Low_complexity 3 91 0 5668 75 21 25 chr11 16854071 16854941 -131928531 + SVA Other Other 1 866 -520 6534 57 11 64 chr11 16854958 16855965 -131927507 + SVA Other Other 433 1386 0 1378 180 50 32 chr11 16855980 16856182 -131927290 + MLT1B LTR MaLR 108 318 -72 2241 102 0 0 chr11 16856182 16856486 -131926986 - AluSx SINE Alu -8 304 1 1378 180 50 32 chr11 16856486 16856561 -131926911 + MLT1B LTR MaLR 318 390 0 456 224 218 42 chr11 16856687 16856852 -131926620 + MIR SINE MIR 50 243 -19 249 242 169 8 chr11 16857261 16857385 -131926087 + MIR3 SINE MIR 22 165 -43 331 263 127 52 chr11 16857838 16858051 -131925421 - MIR SINE MIR -14 248 20 1165 144 39 0 chr11 16858277 16858457 -131925015 + MER20 DNA MER1_type 4 190 -29 310 205 86 51 chr11 16858556 16858673 -131924799 + MIR SINE MIR 30 147 -61 215 345 36 0 chr11 16858690 16858774 -131924698 - MER5A DNA MER1_type -1 188 102 603 224 60 8 chr11 16859863 16859997 -131923475 + MER5B DNA MER1_type 38 178 0 380 266 42 42 chr11 16861233 16861376 -131922096 + L3b LINE CR1 1281 1423 -160 430 274 40 23 chr11 16861655 16861830 -131921642 + L1ME4a LINE L1 5710 5887 -234 289 266 154 14 chr11 16861847 16861990 -131921482 + L1ME4a LINE L1 5955 6117 -4 377 276 12 26 chr11 16862454 16862600 -131920872 - MIR SINE MIR -62 146 12 306 190 174 58 chr11 16862896 16863017 -131920455 - MIR SINE MIR -81 181 47 7901 15 21 0 chr11 16863056 16864041 -131919431 - L1PA3 LINE L1 -4 6151 5162 615 313 61 0 chr11 16864076 16864274 -131919198 + MIR SINE MIR 21 230 -32 2005 135 0 0 chr11 16864627 16864930 -131918542 + AluSx SINE Alu 1 303 -9 279 260 82 0 chr11 16864947 16865020 -131918452 + L2 LINE L2 3180 3258 -55 2389 171 100 7 chr11 16865022 16865484 -131917988 - MLT1D LTR MaLR 0 505 1 196 296 0 0 chr11 16865484 16865528 -131917944 + L2 LINE L2 3215 3258 -14 227 283 47 47 chr11 16866128 16866234 -131917238 + MIR SINE MIR 39 144 -118 2119 114 0 10 chr11 16866619 16866927 -131916545 + AluSq SINE Alu 1 305 -8 388 293 56 50 chr11 16866970 16867087 -131916385 + MIR3 SINE MIR 30 149 -59 1395 181 43 26 chr11 16867087 16867391 -131916081 + AluJo SINE Alu 3 311 -1 388 293 56 50 chr11 16867391 16867436 -131916036 + MIR3 SINE MIR 149 192 -16 443 251 193 11 chr11 16867673 16867860 -131915612 + MIR SINE MIR 42 262 0 346 288 88 24 chr11 16867856 16867981 -131915491 + L2 LINE L2 3104 3236 -36 * 197 232 87 58 chr11 16868327 16868396 -131915076 + MIR SINE MIR 38 108 -100 312 314 124 0 chr11 16869482 16869603 -131913869 - MIR SINE MIR -60 202 67 464 267 144 44 chr11 16869978 16870158 -131913314 - MIR SINE MIR -34 228 31 266 332 21 75 chr11 16874165 16874352 -131909120 - L2 LINE L2 -84 3188 3012 251 352 19 9 chr11 16874593 16874701 -131908771 + MIR SINE MIR 17 125 -83 754 178 51 81 chr11 16874701 16874898 -131908574 + AluJo SINE Alu 112 302 -10 886 243 49 8 chr11 16875373 16875636 -131907836 + L1ME4a LINE L1 5571 5844 -277 882 181 0 12 chr11 16875868 16876028 -131907444 + FRAM SINE Alu 8 165 -11 1636 151 26 26 chr11 16876143 16876454 -131907018 - AluJb SINE Alu -1 311 1 198 0 0 0 chr11 16876603 16876625 -131906847 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 372 226 135 15 chr11 16876630 16876763 -131906709 + L1ME4a LINE L1 5973 6121 0 2389 72 0 3 chr11 16877422 16877729 -131905743 + AluSc SINE Alu 1 306 -3 955 184 0 0 chr11 16877997 16878171 -131905301 + FRAM SINE Alu 1 172 -4 21 0 0 0 chr11 16878517 16878538 -131904934 + AT_rich Low_complexity Low_complexity 1 21 0 409 324 64 6 chr11 16878865 16879038 -131904434 - MER5A DNA MER1_type 0 189 7 1574 153 42 39 chr11 16879140 16879268 -131904204 + AluSx SINE Alu 1 127 -185 219 43 43 22 chr11 16879268 16879314 -131904158 + (CAAAA)n Simple_repeat Simple_repeat 5 51 0 1574 153 42 39 chr11 16879314 16879492 -131903980 + AluSx SINE Alu 127 308 -4 522 272 103 5 chr11 16879773 16879968 -131903504 + MIR SINE MIR 49 262 0 1753 162 0 23 chr11 16879977 16880280 -131903192 - AluJo SINE Alu -12 300 5 489 293 273 5 chr11 16880286 16880801 -131902671 - L2 LINE L2 -6 3307 2648 864 248 62 9 chr11 16880801 16881027 -131902445 - MIR SINE MIR -1 261 24 913 310 47 45 chr11 16881035 16881461 -131902011 - L2 LINE L2 -648 2666 2240 1917 105 47 0 chr11 16882852 16883129 -131900343 + AluSx SINE Alu 1 290 -22 2166 101 0 7 chr11 16883820 16884126 -131899346 + AluSg SINE Alu 2 305 -5 236 217 0 33 chr11 16884648 16884708 -131898764 + MIR SINE MIR 78 135 -73 420 268 131 44 chr11 16884951 16885134 -131898338 - L2 LINE L2 0 3313 3115 2196 103 3 0 chr11 16885304 16885605 -131897867 - AluSp SINE Alu -9 304 3 1793 167 0 10 chr11 16886829 16887140 -131896332 + AluSx SINE Alu 1 308 -4 462 317 8 0 chr11 16887799 16887922 -131895550 + L2 LINE L2 3129 3252 -20 2143 98 7 10 chr11 16887981 16888286 -131895186 - AluSx SINE Alu -8 304 1 287 261 235 39 chr11 16888925 16889078 -131894394 - L3 LINE CR1 -10 1567 1385 709 247 18 58 chr11 16889241 16889464 -131894008 - MIR SINE MIR 0 262 49 313 202 179 0 chr11 16889628 16889712 -131893760 + L2 LINE L2 3215 3313 0 721 269 148 9 chr11 16889712 16889928 -131893544 - MIR SINE MIR -8 254 9 1327 182 77 7 chr11 16890804 16891105 -131892367 - MER33 DNA MER1_type -15 309 1 319 232 61 127 chr11 16891558 16891739 -131891733 - MER5A DNA MER1_type -4 185 17 2179 100 0 0 chr11 16891770 16892061 -131891411 + AluSq SINE Alu 1 291 -22 1155 117 0 0 chr11 16892063 16892225 -131891247 + AluSg/x SINE Alu 134 295 -15 21 0 0 0 chr11 16892240 16892261 -131891211 + AT_rich Low_complexity Low_complexity 1 21 0 331 248 72 59 chr11 16892502 16892655 -131890817 - MIR SINE MIR -2 260 106 1765 134 4 0 chr11 16892672 16892934 -131890538 - AluSx SINE Alu -49 263 1 197 283 94 0 chr11 16893132 16893185 -131890287 + L2 LINE L2 3117 3174 -98 183 156 0 0 chr11 16893224 16893256 -131890216 + (TGGA)n Simple_repeat Simple_repeat 3 34 0 242 275 0 14 chr11 16894689 16894758 -131888714 + MER5A DNA MER1_type 18 85 -104 1144 90 28 11 chr11 16894830 16895007 -131888465 + L1MA8 LINE L1 5430 5609 -682 2125 125 0 0 chr11 16895007 16895318 -131888154 + AluSx SINE Alu 1 311 -1 2143 109 10 10 chr11 16895332 16895644 -131887828 + AluSx SINE Alu 1 312 0 2318 168 67 6 chr11 16895650 16896125 -131887347 + L1MA8 LINE L1 5769 6272 -19 278 299 13 0 chr11 16896258 16896335 -131887137 + (CA)n Simple_repeat Simple_repeat 1 78 0 237 33 0 0 chr11 16896348 16896378 -131887094 + (CA)n Simple_repeat Simple_repeat 2 31 0 422 265 63 63 chr11 16897078 16897267 -131886205 - MER5A DNA MER1_type 0 189 1 196 299 143 41 chr11 16897310 16897457 -131886015 - L2 LINE L2 0 3313 3152 588 267 128 0 chr11 16898740 16898935 -131884537 - MIR SINE MIR -2 260 41 210 71 0 0 chr11 16899048 16899076 -131884396 + (ATG)n Simple_repeat Simple_repeat 3 30 0 223 351 13 0 chr11 16899223 16899300 -131884172 - MIR SINE MIR -171 91 14 973 246 124 75 chr11 16899780 16900248 -131883224 + MLT1J LTR MaLR 21 511 0 1075 199 77 9 chr11 16900307 16900528 -131882944 - MER46A DNA MER2_type 0 236 1 23 0 0 0 chr11 16900614 16900637 -131882835 + AT_rich Low_complexity Low_complexity 1 23 0 283 296 7 59 chr11 16900767 16900902 -131882570 - L2 LINE L2 -213 3059 2932 22 56 0 0 chr11 16901345 16901381 -131882091 + AT_rich Low_complexity Low_complexity 1 36 0 1654 186 20 0 chr11 16901932 16902049 -131881423 + AluJo SINE Alu 1 114 -198 192 40 0 0 chr11 16902049 16902074 -131881398 + (CAA)n Simple_repeat Simple_repeat 3 27 0 1654 186 20 0 chr11 16902074 16902252 -131881220 + AluJo SINE Alu 114 302 -10 2355 70 0 3 chr11 16902389 16902688 -131880784 - AluSg SINE Alu -12 298 1 476 331 69 60 chr11 16902932 16903249 -131880223 + L2 LINE L2 2953 3272 0 563 168 97 0 chr11 16903607 16903720 -131879752 + FLAM_A SINE Alu 13 136 -6 752 212 0 0 chr11 16903884 16904016 -131879456 - FLAM_A SINE Alu -1 132 1 212 333 39 29 chr11 16904131 16904233 -131879239 - MIR SINE MIR -90 118 16 1133 294 44 12 chr11 16904898 16905386 -131878086 + L1MB5 LINE L1 5660 6166 -8 2365 113 0 3 chr11 16905390 16905701 -131877771 - AluSg SINE Alu 0 310 1 1974 175 0 3 chr11 16905732 16906041 -131877431 + AluJb SINE Alu 1 308 -4 402 239 77 65 chr11 16906094 16906341 -131877131 + L1ME4a LINE L1 5872 6121 0 258 281 24 0 chr11 16906415 16906497 -131876975 + L1ME4a LINE L1 5969 6052 -69 1484 95 59 0 chr11 16906779 16907000 -131876472 - L1PA14 LINE L1 0 6161 5928 684 287 79 5 chr11 16909440 16909656 -131873816 + MIR SINE MIR 20 251 -11 550 242 115 45 chr11 16909836 16910085 -131873387 + MIR SINE MIR 2 261 -1 2021 156 3 0 chr11 16910170 16910459 -131873013 - AluSx SINE Alu -22 290 1 183 245 41 0 chr11 16910716 16910765 -131872707 + MIR SINE MIR 99 149 -59 3018 175 30 17 chr11 16911576 16912176 -131871296 - L1MB4 LINE L1 -80 6100 5493 303 273 20 0 chr11 16912484 16912583 -131870889 + Charlie7 DNA MER1_type 1 101 -2511 286 241 241 8 chr11 16912575 16912708 -131870764 + Charlie7 DNA MER1_type 2434 2597 -15 * 1987 136 7 45 chr11 16912725 16913034 -131870438 + AluSx SINE Alu 1 297 -15 469 313 51 42 chr11 16913352 16913569 -131869903 + MIR SINE MIR 13 231 -31 2296 106 0 0 chr11 16913599 16913892 -131869580 + AluSx SINE Alu 1 293 -19 360 64 0 0 chr11 16913979 16914026 -131869446 + (TG)n Simple_repeat Simple_repeat 2 48 0 210 296 209 9 chr11 16916611 16916726 -131866746 - L3b LINE CR1 -195 1388 1251 496 318 201 7 chr11 16916915 16917223 -131866249 + L3 LINE CR1 709 1076 -501 542 269 20 45 chr11 16917414 16917615 -131865857 + MLT1K LTR MaLR 393 588 0 423 294 160 9 chr11 16917616 16917847 -131865625 + L3 LINE CR1 1094 1359 -218 317 272 32 63 chr11 16917909 16918067 -131865405 + MIR SINE MIR 40 192 -70 2034 145 0 25 chr11 16918075 16918392 -131865080 + AluJb SINE Alu 1 309 -3 239 229 176 13 chr11 16918506 16918659 -131864813 + L1ME4a LINE L1 5941 6118 -3 301 305 30 0 chr11 16918986 16919117 -131864355 - L1ME4a LINE L1 -223 5898 5764 185 290 32 16 chr11 16919339 16919401 -131864071 - L2 LINE L2 -1037 2277 2215 29 70 0 0 chr11 16919413 16919470 -131864002 + AT_rich Low_complexity Low_complexity 1 57 0 2079 154 3 0 chr11 16919521 16919820 -131863652 - AluSx SINE Alu -11 301 2 2024 138 3 10 chr11 16919823 16920120 -131863352 - AluJb SINE Alu -17 295 1 1703 168 17 34 chr11 16920121 16920419 -131863053 - AluJo SINE Alu -19 293 1 573 150 71 18 chr11 16921244 16921357 -131862115 - MER5B DNA MER1_type -3 175 57 894 180 0 30 chr11 16921813 16921980 -131861492 + AluJb SINE Alu 136 297 -15 544 16 0 0 chr11 16922119 16922181 -131861291 - U6 snRNA snRNA -1 106 45 731 233 17 47 chr11 16922185 16922447 -131861025 - L1MD2 LINE L1 -51 6115 6020 509 162 0 27 chr11 16922458 16922569 -131860903 - L1MD2 LINE L1 -268 5974 5867 245 253 46 35 chr11 16922648 16922735 -131860737 + L1ME4a LINE L1 5762 5849 -272 446 195 0 0 chr11 16922813 16922890 -131860582 - MER2 DNA MER2_type -262 83 7 568 191 211 0 chr11 16922897 16923096 -131860376 + L1ME4a LINE L1 5864 6104 -17 217 324 49 20 chr11 16923802 16923904 -131859568 + MIR3 SINE MIR 81 185 -23 312 215 140 21 chr11 16924080 16924173 -131859299 + L2 LINE L2 3210 3313 0 216 358 25 0 chr11 16924815 16924896 -131858576 + L2 LINE L2 3171 3253 -19 547 268 51 19 chr11 16925042 16925199 -131858273 + MIR SINE MIR 37 198 -64 471 258 16 41 chr11 16925851 16926045 -131857427 - L1ME LINE L1 -312 5809 5621 2077 96 30 0 chr11 16926301 16926601 -131856871 - AluSg SINE Alu 0 308 1 394 237 140 0 chr11 16926704 16926797 -131856675 - MIR SINE MIR -63 145 40 321 271 365 0 chr11 16927483 16927653 -131855819 - MIR SINE MIR 0 262 31 1735 95 137 0 chr11 16927918 16928180 -131855292 + AluSq SINE Alu 1 298 -5 811 245 139 14 chr11 16928497 16928705 -131854767 - MIR SINE MIR -15 247 14 288 0 0 0 chr11 16930058 16930090 -131853382 + (CA)n Simple_repeat Simple_repeat 2 33 0 303 71 0 0 chr11 16930091 16930133 -131853339 + (GA)n Simple_repeat Simple_repeat 1 42 0 240 342 35 0 chr11 16930202 16930316 -131853156 + L2 LINE L2 2943 3060 -212 533 316 46 15 chr11 16930448 16930644 -131852828 + L3 LINE CR1 1316 1517 -60 1068 153 148 10 chr11 16931163 16931359 -131852113 + AluJo SINE Alu 85 307 -5 196 313 0 0 chr11 16931388 16931436 -131852036 - L2 LINE L2 -12 3260 3213 197 179 26 0 chr11 16931487 16931526 -131851946 - L2 LINE L2 -577 2737 2698 21 95 0 0 chr11 16931550 16931613 -131851859 + AT_rich Low_complexity Low_complexity 1 63 0 1153 214 179 47 chr11 16931617 16932125 -131851347 + L2 LINE L2 2690 3313 0 552 298 0 0 chr11 16932126 16932257 -131851215 - MIR SINE MIR -86 176 46 276 300 71 57 chr11 16932367 16932507 -131850965 + L2 LINE L2 3126 3267 -5 225 143 0 0 chr11 16932623 16932658 -131850814 + U2 snRNA snRNA 2 36 -152 297 268 98 9 chr11 16933081 16933193 -131850279 + L2 LINE L2 3191 3312 -1 444 224 40 40 chr11 16933905 16934030 -131849442 + MIR SINE MIR 16 140 -68 245 246 53 0 chr11 16934834 16934891 -131848581 + MIR SINE MIR 93 152 -56 210 257 88 74 chr11 16934903 16935051 -131848421 + L2 LINE L2 2910 3059 -213 376 250 27 54 chr11 16935400 16935512 -131847960 - MIR SINE MIR -145 117 9 267 79 0 0 chr11 16935683 16935721 -131847751 + (TTCC)n Simple_repeat Simple_repeat 1 38 0 2307 117 7 3 chr11 16935721 16936029 -131847443 - AluSq SINE Alu -4 309 1 972 254 208 12 chr11 16936029 16936438 -131847034 - L3 LINE CR1 -108 1469 981 630 293 29 34 chr11 16936531 16936739 -131846733 + MIR SINE MIR 13 219 -43 223 224 45 75 chr11 16936737 16936804 -131846668 - MIR SINE MIR -152 110 46 * 363 285 152 26 chr11 16936871 16937022 -131846450 + L2 LINE L2 3101 3270 -2 207 88 0 0 chr11 16937451 16937485 -131845987 + (TAAAAA)n Simple_repeat Simple_repeat 2 35 0 662 81 0 0 chr11 16937493 16937580 -131845892 + AluY SINE Alu 218 304 -7 1254 258 138 10 chr11 16938541 16939256 -131844216 - L2 LINE L2 -4 3309 2508 337 240 178 16 chr11 16939623 16939752 -131843720 + MIR SINE MIR 49 198 -64 2268 118 0 3 chr11 16939754 16940058 -131843414 + AluSx SINE Alu 1 303 -9 398 219 89 57 chr11 16940098 16940221 -131843251 + MIR SINE MIR 98 224 -38 234 264 140 83 chr11 16941924 16942238 -131841234 + L2 LINE L2 2886 3217 -55 * 404 172 232 0 chr11 16942222 16942321 -131841151 - L2 LINE L2 -19 3294 3173 * 703 246 134 22 chr11 16942317 16942549 -131840923 - MIR SINE MIR -3 259 2 321 258 0 0 chr11 16942590 16942656 -131840816 + L2 LINE L2 3202 3267 -5 365 284 52 9 chr11 16943377 16943493 -131839979 - MIR SINE MIR -10 252 132 2567 54 0 0 chr11 16943936 16944230 -131839242 + AluY SINE Alu 1 294 -17 766 197 81 73 chr11 16945222 16945469 -131838003 + MIR SINE MIR 12 255 -7 277 354 63 8 chr11 16946972 16947099 -131836373 - MIR SINE MIR -19 243 110 298 247 34 22 chr11 16947099 16947188 -131836284 - MER5A DNA MER1_type -3 186 97 2061 125 0 34 chr11 16947370 16947667 -131835805 - AluSx SINE Alu -13 299 13 590 184 88 41 chr11 16947994 16948141 -131835331 - MIR SINE MIR -99 163 10 255 374 134 0 chr11 16948415 16948586 -131834886 + L2 LINE L2 3079 3272 0 242 320 0 41 chr11 16948589 16948686 -131834786 - L3 LINE CR1 -89 1488 1396 956 209 0 11 chr11 16949540 16949717 -131833755 + FRAM SINE Alu 1 172 -4 318 303 26 92 chr11 16949762 16949914 -131833558 + MIR SINE MIR 24 165 -97 348 264 166 18 chr11 16950104 16950267 -131833205 - L1MC4 LINE L1 -66 7976 7790 2375 99 7 0 chr11 16950275 16950577 -131832895 - AluSp SINE Alu -9 304 1 669 200 132 77 chr11 16950763 16950983 -131832489 - MIR SINE MIR -11 251 20 2310 137 0 0 chr11 16951667 16951980 -131831492 - AluSq SINE Alu 0 313 1 213 344 0 0 chr11 16951983 16952044 -131831428 + MIR SINE MIR 83 143 -65 2247 113 0 7 chr11 16952535 16952835 -131830637 + AluSx SINE Alu 1 298 -14 1639 110 169 0 chr11 16953376 16953631 -131829841 + AluSq SINE Alu 1 298 -15 2224 117 3 0 chr11 16953634 16953933 -131829539 + AluSx SINE Alu 3 302 -10 504 186 41 21 chr11 16954472 16954617 -131828855 + MER45B DNA AcHobo 744 891 -149 1193 110 0 0 chr11 16954617 16954771 -131828701 - AluSp SINE Alu -20 293 140 639 165 25 108 chr11 16954798 16954862 -131828610 + MER45B DNA AcHobo 896 964 -617 1822 167 0 3 chr11 16954862 16955161 -131828311 - AluJb SINE Alu -14 298 1 639 165 25 108 chr11 16955161 16955173 -131828299 + MER45B DNA AcHobo 964 975 -606 538 92 0 0 chr11 16955173 16955249 -131828223 - MADE1 DNA Mariner -4 76 1 639 165 25 108 chr11 16955249 16955329 -131828143 + MER45B DNA AcHobo 975 1040 0 354 278 126 26 chr11 16956463 16956614 -131826858 + MIR SINE MIR 35 200 -62 318 315 85 8 chr11 16956659 16956789 -131826683 + MIR SINE MIR 122 261 -1 225 290 0 0 chr11 16956789 16956851 -131826621 + (TTA)n Simple_repeat Simple_repeat 3 64 0 1398 205 29 0 chr11 16956912 16957218 -131826254 - AluJo SINE Alu 0 314 1 2070 122 6 10 chr11 16957396 16957707 -131825765 + AluSx SINE Alu 1 310 -2 872 185 0 0 chr11 16957756 16957902 -131825570 + FRAM SINE Alu 1 146 -30 1972 283 209 18 chr11 16958564 16960025 -131823447 + L2 LINE L2 1561 3293 -20 314 208 208 16 chr11 16960347 16960472 -131823000 - L2 LINE L2 0 3272 3124 29 47 0 0 chr11 16961375 16961418 -131822054 + GC_rich Low_complexity Low_complexity 1 43 0 202 95 24 48 chr11 16961546 16961588 -131821884 + (CCCCCG)n Simple_repeat Simple_repeat 6 46 0 366 74 0 0 chr11 16961727 16961781 -131821691 + (CGGGGG)n Simple_repeat Simple_repeat 2 55 0 34 42 0 0 chr11 16961987 16962035 -131821437 + GC_rich Low_complexity Low_complexity 1 48 0 347 258 105 24 chr11 16962197 16962321 -131821151 + MIR SINE MIR 117 250 -12 486 284 151 28 chr11 16962547 16962832 -131820640 + L2 LINE L2 2987 3306 -7 1993 90 10 7 chr11 16962837 16963125 -131820347 + AluSq SINE Alu 5 293 -20 369 0 0 0 chr11 16963171 16963212 -131820260 + (CA)n Simple_repeat Simple_repeat 1 41 0 1505 247 74 45 chr11 16963675 16963840 -131819632 + L1MC4a LINE L1 5319 5478 -2330 2162 120 0 0 chr11 16963840 16964141 -131819331 + AluSx SINE Alu 1 301 -11 1505 247 74 45 chr11 16964141 16964512 -131818960 + L1MC4a LINE L1 5478 5877 -1931 1583 188 18 0 chr11 16964512 16964809 -131818663 + AluJo SINE Alu 1 302 0 1505 247 74 45 chr11 16964809 16964850 -131818622 + L1MC4a LINE L1 5877 5915 -1893 3007 188 88 36 chr11 16965129 16965262 -131818210 + L1MD2 LINE L1 5457 5582 -777 2041 136 0 0 chr11 16965262 16965556 -131817916 - AluSx SINE Alu -18 294 1 3007 188 88 36 chr11 16965556 16966036 -131817436 + L1MD2 LINE L1 5582 6130 -229 1718 141 4 11 chr11 16966036 16966346 -131817126 - AluSx SINE Alu 0 314 7 3007 188 88 36 chr11 16966346 16966586 -131816886 + L1MD2 LINE L1 6130 6356 -3 365 261 18 27 chr11 16967024 16967135 -131816337 + MIR SINE MIR 1 110 -152 23 0 0 0 chr11 16967433 16967456 -131816016 + AT_rich Low_complexity Low_complexity 1 23 0 1543 187 11 0 chr11 16967457 16967735 -131815737 - AluJb SINE Alu -24 288 8 24 24 0 24 chr11 16967742 16967765 -131815707 + AT_rich Low_complexity Low_complexity 1 24 -17 2200 90 3 0 chr11 16967765 16968054 -131815418 - AluSp SINE Alu -23 290 1 24 24 0 24 chr11 16968054 16968072 -131815400 + AT_rich Low_complexity Low_complexity 24 41 0 2684 185 36 38 chr11 16968075 16968606 -131814866 + LTR26 LTR ERV1 52 581 -22 818 204 117 128 chr11 16968913 16969241 -131814231 - MLT2C2 LTR ERVL -8 456 133 1683 154 3 31 chr11 16969241 16969534 -131813938 + AluJb SINE Alu 5 289 -23 818 204 117 128 chr11 16969534 16969666 -131813806 - MLT2C2 LTR ERVL -331 133 1 2271 242 38 35 chr11 16970001 16970662 -131812810 - L1MC4 LINE L1 -142 7900 7238 1893 212 103 64 chr11 16970665 16971200 -131812272 - L1MC4 LINE L1 -812 6996 6442 315 0 0 0 chr11 16971552 16971587 -131811885 + (CA)n Simple_repeat Simple_repeat 2 36 0 1689 166 0 35 chr11 16971674 16971993 -131811479 - AluJo SINE Alu -4 308 1 345 47 0 0 chr11 16972380 16972423 -131811049 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 248 217 50 0 chr11 16972653 16972713 -131810759 + MIR SINE MIR 130 192 -70 2015 109 24 3 chr11 16972974 16973268 -131810204 + AluSp SINE Alu 1 300 -13 1877 141 17 0 chr11 16973503 16973854 -131809618 - AluSx SINE Alu 0 356 1 199 325 12 12 chr11 16973880 16973963 -131809509 - MIR SINE MIR -96 112 30 201 233 23 0 chr11 16974431 16974474 -131808998 - MIR SINE MIR -64 144 101 1125 176 19 19 chr11 16974519 16974735 -131808737 + AluJb SINE Alu 73 288 -24 2287 77 0 0 chr11 16974741 16975038 -131808434 - AluY SINE Alu -14 297 1 24 53 0 0 chr11 16975038 16975076 -131808396 + AT_rich Low_complexity Low_complexity 1 38 0 46 83 0 0 chr11 16975087 16975196 -131808276 + AT_rich Low_complexity Low_complexity 1 109 0 1056 182 0 5 chr11 16975347 16975534 -131807938 - AluJo SINE Alu -110 202 17 1930 133 0 0 chr11 16975554 16975856 -131807616 + AluSx SINE Alu 5 306 0 2054 103 17 0 chr11 16975866 16976157 -131807315 + AluSx SINE Alu 1 296 -16 459 266 108 72 chr11 16976762 16976984 -131806488 - L2 LINE L2 -3 3269 3040 1591 231 100 45 chr11 16977045 16977146 -131806326 - MLT1G LTR MaLR 0 590 496 856 149 0 8 chr11 16977146 16977280 -131806192 + FLAM_C SINE Alu 1 133 0 1591 231 100 45 chr11 16977280 16977710 -131805762 - MLT1G LTR MaLR -94 496 30 1205 177 139 4 chr11 16977739 16978005 -131805467 - AluJo SINE Alu -10 302 1 2065 121 0 0 chr11 16978189 16978486 -131804986 - AluSx SINE Alu -1 311 15 444 252 46 8 chr11 16978505 16978636 -131804836 + MIR SINE MIR 63 198 -64 1319 192 69 10 chr11 16978638 16978929 -131804543 - MER44D DNA MER2_type -2 607 30 2127 113 0 0 chr11 16978968 16979261 -131804211 + AluSx SINE Alu 1 293 -19 1526 218 52 0 chr11 16979290 16979616 -131803856 - MER63 DNA MER1_type 0 1061 719 978 208 59 72 chr11 16979616 16979991 -131803481 + HAL1 LINE L1 1208 1577 -930 2293 75 10 3 chr11 16979991 16980296 -131803176 + AluSq SINE Alu 1 307 -6 620 232 53 16 chr11 16980307 16980497 -131802975 - L2 LINE L2 -983 2331 2135 369 243 92 53 chr11 16980497 16980649 -131802823 + HAL1 LINE L1 1679 1836 -671 374 267 140 20 chr11 16980664 16980964 -131802508 + HAL1 LINE L1 1864 2199 -308 2239 151 30 10 chr11 16980994 16981392 -131802080 + L1MB5 LINE L1 5625 6030 -144 579 129 40 20 chr11 16981393 16981494 -131801978 - FLAM_C SINE Alu -15 128 26 813 152 21 7 chr11 16981503 16981648 -131801824 + L1MB5 LINE L1 6022 6168 -6 309 226 67 168 chr11 16981655 16981683 -131801789 + HAL1 LINE L1 2321 2350 -157 2205 97 0 0 chr11 16981683 16981973 -131801499 + AluSg SINE Alu 1 290 -20 309 226 67 168 chr11 16981973 16982102 -131801370 + HAL1 LINE L1 2350 2455 -52 1678 165 7 0 chr11 16982102 16982375 -131801097 + AluSx SINE Alu 1 275 -37 309 226 67 168 chr11 16982375 16982424 -131801048 + HAL1 LINE L1 2455 2507 0 1541 114 12 24 chr11 16982437 16982691 -131800781 + AluSq SINE Alu 56 306 -7 2138 80 0 0 chr11 16982693 16982967 -131800505 + AluY SINE Alu 1 274 -37 1562 122 173 0 chr11 16983143 16983397 -131800075 - AluSx SINE Alu -4 298 1 575 51 26 0 chr11 16983783 16983861 -131799611 - MADE1 DNA Mariner 0 80 1 430 121 33 88 chr11 16984481 16984572 -131798900 - U14 snRNA snRNA -1 86 1 508 191 145 40 chr11 16984686 16984838 -131798634 + MER58A DNA MER1_type 30 197 -27 410 133 33 78 chr11 16985606 16985696 -131797776 - U14 snRNA snRNA -1 86 1 210 260 96 0 chr11 16985738 16985811 -131797661 - MIR SINE MIR -4 258 179 180 239 43 60 chr11 16985789 16985906 -131797566 + L2 LINE L2 3110 3224 -89 * 1999 89 7 14 chr11 16985944 16986226 -131797246 + AluSx SINE Alu 12 291 -21 1250 82 12 0 chr11 16986227 16986398 -131797074 + AluSq SINE Alu 127 299 -14 688 163 49 0 chr11 16986398 16986521 -131796951 - FRAM SINE Alu -30 146 18 227 283 117 0 chr11 16986561 16986621 -131796851 + L2 LINE L2 3242 3308 -5 563 281 16 47 chr11 16986692 16986884 -131796588 + MIR SINE MIR 44 229 -33 2256 68 7 0 chr11 16988298 16988593 -131794879 - AluSp SINE Alu -16 297 1 1075 164 31 9 chr11 16988613 16988839 -131794633 + AluJb SINE Alu 82 312 0 2415 38 0 3 chr11 16989067 16989358 -131794114 + AluY SINE Alu 1 290 -21 656 268 227 51 chr11 16989550 16990400 -131793072 + L2 LINE L2 2293 3312 -1 2176 81 10 3 chr11 16990550 16990848 -131792624 - AluSx SINE Alu -12 300 1 872 159 114 57 chr11 16991139 16991384 -131792088 - L1MB7 LINE L1 -16 6168 5910 2009 78 4 0 chr11 16991385 16991643 -131791829 + AluSg SINE Alu 1 259 -51 229 173 0 120 chr11 16991647 16991722 -131791750 - AluSq/x SINE Alu -152 151 86 973 189 45 5 chr11 16991722 16991923 -131791549 - AluJo SINE Alu -92 220 12 542 122 0 0 chr11 16991940 16992022 -131791450 - L1MB7 LINE L1 -311 5867 5786 270 0 0 0 chr11 16992023 16992053 -131791419 + (T)n Simple_repeat Simple_repeat 1 30 0 1568 74 5 0 chr11 16992060 16992262 -131791210 - AluSp SINE Alu -110 203 1 811 127 63 21 chr11 16992271 16992413 -131791059 - AluSx SINE Alu -11 301 154 317 231 58 29 chr11 16992415 16992519 -131790953 - L1MB7 LINE L1 -54 6130 6024 1090 104 0 37 chr11 16992522 16992686 -131790786 - AluSx SINE Alu -154 158 1 1160 156 55 42 chr11 16992686 16992993 -131790479 - L1MB7 LINE L1 -815 5331 5021 826 192 12 6 chr11 16992994 16993166 -131790306 - FRAM SINE Alu 0 40 1 594 167 45 8 chr11 16993172 16993304 -131790168 - L1MB7 LINE L1 -1120 5026 4890 1797 150 7 29 chr11 16993443 16993750 -131789722 + AluJb SINE Alu 1 300 -12 314 235 31 41 chr11 16993805 16993903 -131789569 + L1MC5 LINE L1 7805 7901 -60 23 98 0 0 chr11 16994241 16994282 -131789190 + AT_rich Low_complexity Low_complexity 1 41 0 532 131 12 0 chr11 16994452 16994536 -131788936 - AluSg1 SINE Alu -223 86 2 2324 67 7 0 chr11 16994570 16994867 -131788605 + AluY SINE Alu 1 299 -12 314 235 31 41 chr11 16994922 16995020 -131788452 + L1MC5 LINE L1 7805 7901 -60 759 84 65 0 chr11 16995405 16995512 -131787960 + AluSx SINE Alu 2 115 -197 1822 201 86 19 chr11 16995536 16995965 -131787507 + LTR2B LTR ERV1 32 489 -1 1251 107 0 6 chr11 16995965 16996143 -131787329 + AluSx SINE Alu 116 292 -18 2265 75 24 0 chr11 16998009 16998302 -131785170 - AluSq SINE Alu -13 300 1 237 108 0 0 chr11 16999411 16999448 -131784024 + (TG)n Simple_repeat Simple_repeat 1 37 0 2027 122 7 0 chr11 16999947 17000243 -131783229 + AluSp SINE Alu 1 298 -15 329 330 20 10 chr11 17000300 17000400 -131783072 + L3 LINE CR1 1446 1546 -31 1847 141 0 30 chr11 17000503 17000807 -131782665 - AluJb SINE Alu -17 295 1 1436 109 23 5 chr11 17000834 17001054 -131782418 + L1PA10 LINE L1 5944 6167 -1 1628 122 79 36 chr11 17002158 17002437 -131781035 + AluSx SINE Alu 1 291 -21 549 100 0 0 chr11 17002554 17002634 -131780838 - MADE1 DNA Mariner 0 80 1 2257 62 10 3 chr11 17003034 17003324 -131780148 - AluY SINE Alu -19 292 1 1647 157 3 33 chr11 17003399 17003698 -131779774 - AluJb SINE Alu -21 291 2 204 372 21 0 chr11 17003828 17003922 -131779550 - L2 LINE L2 0 3272 3177 2032 108 11 0 chr11 17004202 17004488 -131778984 + AluSx SINE Alu 1 289 -23 1541 189 3 57 chr11 17004727 17005044 -131778428 + AluJb SINE Alu 1 300 -12 2234 74 0 51 chr11 17005054 17005350 -131778122 + AluY SINE Alu 1 281 -30 204 79 26 0 chr11 17005350 17005388 -131778084 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 1631 137 22 32 chr11 17005393 17005670 -131777802 + AluSx SINE Alu 3 276 -36 327 78 0 0 chr11 17005680 17005731 -131777741 + (TAAAA)n Simple_repeat Simple_repeat 5 55 0 2222 115 3 0 chr11 17005802 17006097 -131777375 - AluSx SINE Alu -16 296 1 2131 114 6 16 chr11 17007391 17007706 -131775766 + AluSx SINE Alu 1 312 0 1426 211 47 19 chr11 17007956 17008317 -131775155 + MLT1A2 LTR MaLR 3 373 -1 2275 97 3 0 chr11 17008664 17008954 -131774518 - AluSp SINE Alu -22 291 1 1138 130 6 12 chr11 17009155 17009324 -131774148 + AluSg/x SINE Alu 132 299 -13 21 0 0 0 chr11 17009418 17009439 -131774033 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 17010003 17010024 -131773448 + GC_rich Low_complexity Low_complexity 1 21 0 1763 120 0 32 chr11 17010033 17010283 -131773189 - AluSx SINE Alu -70 242 1 1750 167 13 10 chr11 17010293 17010592 -131772880 - L1PB4 LINE L1 -2 6154 5855 667 231 182 11 chr11 17010636 17010900 -131772572 - L1ME3A LINE L1 0 6170 5862 2568 68 0 0 chr11 17011353 17011664 -131771808 - AluY SINE Alu 0 311 1 2513 42 0 3 chr11 17011916 17012205 -131771267 + AluY SINE Alu 1 288 -23 190 0 67 0 chr11 17012214 17012244 -131771228 + (CAA)n Simple_repeat Simple_repeat 2 33 0 587 247 109 10 chr11 17013314 17013362 -131770110 - MIR SINE MIR -1 261 219 216 97 0 0 chr11 17013362 17013393 -131770079 + (TG)n Simple_repeat Simple_repeat 2 32 0 587 247 109 10 chr11 17013393 17013569 -131769903 - MIR SINE MIR -43 219 19 393 231 12 162 chr11 17014049 17014204 -131769268 - MIR SINE MIR -41 221 115 2524 73 0 0 chr11 17014204 17014507 -131768965 + AluY SINE Alu 1 303 -8 393 231 12 162 chr11 17014507 17014598 -131768874 - MIR SINE MIR -147 115 12 2909 58 3 6 chr11 17015145 17015507 -131767965 - L1PA8 LINE L1 -8 6164 5804 2274 106 0 0 chr11 17015589 17015881 -131767591 + AluSx SINE Alu 3 294 -18 1880 171 7 3 chr11 17015889 17016194 -131767278 + AluSx SINE Alu 1 306 -6 1122 132 0 66 chr11 17016317 17016499 -131766973 - AluSq SINE Alu -141 172 3 2456 80 0 0 chr11 17016792 17017093 -131766379 + AluY SINE Alu 2 302 -9 26 64 0 0 chr11 17017403 17017450 -131766022 + AT_rich Low_complexity Low_complexity 1 47 0 2051 136 3 3 chr11 17017629 17017931 -131765541 - AluSx SINE Alu -10 302 1 234 121 0 0 chr11 17017932 17017965 -131765507 - U7 snRNA snRNA -29 34 2 199 283 70 91 chr11 17017967 17018081 -131765391 + L3 LINE CR1 741 851 -726 1381 190 9 58 chr11 17018081 17018407 -131765065 + AluJo SINE Alu 1 310 -2 199 283 70 91 chr11 17018407 17018479 -131764993 + L3 LINE CR1 851 923 -654 524 294 15 44 chr11 17018676 17018880 -131764592 + L3 LINE CR1 1278 1475 -102 1340 199 109 0 chr11 17019337 17019593 -131763879 - AluJo SINE Alu -26 286 3 2023 138 0 7 chr11 17019711 17020002 -131763470 - AluSx SINE Alu -13 299 11 1059 177 64 0 chr11 17020026 17020229 -131763243 + L1MD1 LINE L1 6027 6242 0 553 272 136 31 chr11 17020564 17020821 -131762651 - AluJo SINE Alu -16 286 3 2048 146 0 7 chr11 17020939 17021240 -131762232 - AluSx SINE Alu -13 299 1 1070 106 0 7 chr11 17021619 17021761 -131761711 + AluSx SINE Alu 23 163 -149 180 237 0 0 chr11 17021793 17021831 -131761641 + MIR SINE MIR 90 127 -135 324 87 0 0 chr11 17021831 17021877 -131761595 + L1MB7 LINE L1 6111 6156 -28 2009 120 0 0 chr11 17021877 17022185 -131761287 - AluSx SINE Alu 0 318 11 1059 177 64 0 chr11 17022209 17022412 -131761060 + L1MD1 LINE L1 6027 6242 0 2277 114 3 0 chr11 17022582 17022889 -131760583 + AluSq SINE Alu 1 308 -5 2203 99 0 3 chr11 17023157 17023439 -131760033 + AluSx SINE Alu 1 281 -31 36 0 0 0 chr11 17023439 17023475 -131759997 + AT_rich Low_complexity Low_complexity 1 36 0 1102 171 0 0 chr11 17023765 17023940 -131759532 - FRAM SINE Alu -4 172 1 1365 106 0 0 chr11 17023989 17024169 -131759303 - AluSq SINE Alu -3 310 131 1936 98 0 0 chr11 17024541 17024787 -131758685 + AluSx SINE Alu 55 300 -12 2210 107 7 0 chr11 17024787 17025119 -131758353 + AluSg SINE Alu 1 334 0 503 289 116 34 chr11 17025623 17026011 -131757461 + L1MC/D LINE L1 5318 5737 -2071 896 217 100 23 chr11 17026036 17026255 -131757217 + L1MB5 LINE L1 4538 4788 -1358 1706 185 10 22 chr11 17026255 17026569 -131756903 + AluJb SINE Alu 1 310 -2 896 217 100 23 chr11 17026569 17026649 -131756823 + L1MB5 LINE L1 4788 4860 -1286 739 112 0 0 chr11 17026667 17026765 -131756707 - U6 snRNA snRNA -9 98 1 3602 178 84 20 chr11 17026767 17027593 -131755879 + L1MB5 LINE L1 4846 5768 -406 2548 61 0 0 chr11 17027593 17027890 -131755582 - AluY SINE Alu -14 297 1 3602 178 84 20 chr11 17027890 17028223 -131755249 + L1MB5 LINE L1 5768 6078 -96 2273 86 3 32 chr11 17028710 17029025 -131754447 - AluY SINE Alu -5 306 1 581 172 47 8 chr11 17029164 17029292 -131754180 + L1M4 LINE L1 4890 5022 -1124 737 217 13 7 chr11 17029292 17029444 -131754028 + FRAM SINE Alu 1 146 -30 541 240 89 39 chr11 17029525 17029783 -131753689 + L1M4 LINE L1 5061 5331 -815 2303 81 10 3 chr11 17029783 17030081 -131753391 + AluSx SINE Alu 1 300 -12 221 282 39 13 chr11 17030233 17030311 -131753161 - L2 LINE L2 -1 3312 3233 21 0 0 0 chr11 17031039 17031060 -131752412 + GC_rich Low_complexity Low_complexity 1 21 0 202 231 0 31 chr11 17031131 17031196 -131752276 + (CGGGG)n Simple_repeat Simple_repeat 5 67 0 424 202 13 48 chr11 17031308 17031721 -131751751 + A-rich Low_complexity Low_complexity 1 398 0 256 197 34 51 chr11 17031839 17032017 -131751455 + (CACAA)n Simple_repeat Simple_repeat 1 175 0 555 62 0 0 chr11 17032202 17032282 -131751190 + (A)n Simple_repeat Simple_repeat 1 80 0 42 57 0 0 chr11 17032300 17032370 -131751102 + AT_rich Low_complexity Low_complexity 1 70 0 2100 131 10 0 chr11 17032387 17032693 -131750779 + AluSx SINE Alu 1 309 -3 1070 212 28 5 chr11 17032693 17032905 -131750567 + AluJo SINE Alu 72 288 -24 45233 36 1 2 chr11 17032974 17039138 -131744334 - L1PA2 LINE L1 0 6155 1 1391 217 54 50 chr11 17039138 17039543 -131743929 + L1MC4 LINE L1 7099 7508 -534 2251 129 0 0 chr11 17039543 17039852 -131743620 - AluSx SINE Alu -3 309 1 1391 217 54 50 chr11 17039852 17039889 -131743583 + L1MC4 LINE L1 7508 7543 -499 368 200 35 0 chr11 17039898 17040013 -131743459 + (TA)n Simple_repeat Simple_repeat 1 119 0 2390 98 0 0 chr11 17040017 17040313 -131743159 + AluSg SINE Alu 1 296 -14 21575 138 28 20 chr11 17040328 17042825 -131740647 + L1M1 LINE L1 18 2493 -5072 2312 77 23 3 chr11 17042825 17043124 -131740348 + AluY SINE Alu 1 305 -6 21575 138 28 20 chr11 17043124 17043184 -131740288 + L1M1 LINE L1 2493 2551 -5014 1937 110 58 27 chr11 17043184 17043476 -131739996 + AluSg SINE Alu 1 301 -9 21575 138 28 20 chr11 17043476 17044043 -131739429 + L1M1 LINE L1 2551 3179 -4386 2296 81 16 23 chr11 17044043 17044353 -131739119 + AluSp SINE Alu 1 308 -5 21575 138 28 20 chr11 17044353 17044835 -131738637 + L1M1 LINE L1 3179 3656 -3909 1901 189 121 13 chr11 17044837 17045337 -131738135 - SATR1 Satellite Satellite 0 554 1 2451 164 98 17 chr11 17045364 17048648 -131734824 - SATR1 Satellite Satellite -393 3550 1 844 127 242 0 chr11 17048720 17048885 -131734587 - SATR1 Satellite Satellite -120 350 146 232 204 0 0 chr11 17048909 17048953 -131734519 - AluJ/monomer SINE Alu -259 44 1 3436 226 26 23 chr11 17048993 17049981 -131733491 + L1MB3 LINE L1 4818 5802 -381 1968 121 4 4 chr11 17049981 17050261 -131733211 + AluSx SINE Alu 1 280 -32 222 37 0 0 chr11 17050263 17050290 -131733182 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 3436 226 26 23 chr11 17050290 17050379 -131733093 + L1MB3 LINE L1 5802 5889 -294 2280 117 0 0 chr11 17050379 17050678 -131732794 + AluSx SINE Alu 3 301 -11 3436 226 26 23 chr11 17050678 17050931 -131732541 + L1MB3 LINE L1 5889 6156 -27 34 0 0 0 chr11 17050945 17050979 -131732493 + AT_rich Low_complexity Low_complexity 1 34 0 2339 95 0 3 chr11 17052373 17052669 -131730803 + AluSg SINE Alu 1 295 -15 190 327 44 26 chr11 17053046 17053159 -131730313 + L2 LINE L2 3158 3272 0 2216 94 0 10 chr11 17053221 17053518 -131729954 - AluSc SINE Alu -15 294 1 1300 56 0 0 chr11 17053545 17053706 -131729766 + L1PA5 LINE L1 5994 6154 0 23 0 0 0 chr11 17054042 17054065 -131729407 + AT_rich Low_complexity Low_complexity 1 23 0 6992 77 20 55 chr11 17054065 17056353 -131727119 - SVA Other Other -518 1386 57 570 15 0 0 chr11 17056353 17056420 -131727052 + (GGGAGA)n Simple_repeat Simple_repeat 1 67 0 2572 69 3 0 chr11 17057864 17058169 -131725303 + AluSp SINE Alu 1 306 -7 1260 215 219 25 chr11 17058187 17059146 -131724326 - SATR1 Satellite Satellite -2 1145 1 1397 188 276 28 chr11 17059177 17060274 -131723198 - SATR1 Satellite Satellite -1 1369 1 1016 238 190 42 chr11 17060311 17061161 -131722311 - SATR1 Satellite Satellite -4 975 1 1162 197 277 8 chr11 17061199 17062193 -131721279 - SATR1 Satellite Satellite -3 1260 1 1152 201 248 22 chr11 17062207 17063731 -131719741 - SATR1 Satellite Satellite -10 1868 1 11345 170 32 31 chr11 17063731 17063878 -131719594 + L1 LINE L1 2242 2387 -3759 2192 125 0 6 chr11 17063878 17064190 -131719282 + AluSx SINE Alu 3 312 0 11345 170 32 31 chr11 17064190 17064570 -131718902 + L1 LINE L1 2387 2765 -3381 2234 120 3 0 chr11 17064570 17064871 -131718601 + AluSx SINE Alu 1 302 -10 11345 170 32 31 chr11 17064871 17065396 -131718076 + L1 LINE L1 2765 3288 -2858 2058 158 0 0 chr11 17065396 17065699 -131717773 + AluSx SINE Alu 1 303 -9 11345 170 32 31 chr11 17065699 17067000 -131716472 + L1 LINE L1 3288 4599 -1547 339 221 173 0 chr11 17067038 17067142 -131716330 - MER5A DNA MER1_type 0 189 68 1152 114 0 13 chr11 17067142 17067325 -131716147 - AluJb SINE Alu 0 312 134 2269 103 0 3 chr11 17067484 17067786 -131715686 - AluSg SINE Alu -9 301 1 25 31 0 0 chr11 17067879 17067911 -131715561 + AT_rich Low_complexity Low_complexity 1 32 0 191 296 0 0 chr11 17067944 17067988 -131715484 + L2 LINE L2 3210 3253 -19 399 273 45 0 chr11 17068085 17068195 -131715277 - L2 LINE L2 -10 3303 3189 2231 127 0 16 chr11 17068748 17069063 -131714409 - AluSx SINE Alu -2 310 1 310 298 149 12 chr11 17069223 17069384 -131714088 + MIR3 SINE MIR 20 202 -6 591 126 0 0 chr11 17069498 17069593 -131713879 + (TCTA)n Simple_repeat Simple_repeat 2 96 0 22 0 0 0 chr11 17069624 17069646 -131713826 + AT_rich Low_complexity Low_complexity 1 22 0 2158 117 0 14 chr11 17069648 17069939 -131713533 + AluSx SINE Alu 1 287 -25 1178 144 0 0 chr11 17120657 17120830 -131662642 - AluSx SINE Alu -129 183 11 1000 177 64 0 chr11 17120854 17121057 -131662415 + L1MD1 LINE L1 6027 6242 0 2276 114 3 0 chr11 17121227 17121534 -131661938 + AluSq SINE Alu 1 308 -5 2274 109 0 3 chr11 17121803 17122114 -131661358 + AluSx SINE Alu 1 310 -2 1110 171 0 0 chr11 17122411 17122586 -131660886 - FRAM SINE Alu -4 172 1 1341 111 0 0 chr11 17122635 17122815 -131660657 - AluSq SINE Alu -3 310 131 1886 102 0 0 chr11 17123187 17123433 -131660039 + AluSx SINE Alu 55 300 -12 2192 107 7 0 chr11 17123433 17123761 -131659711 + AluSg SINE Alu 1 330 0 410 263 128 36 chr11 17124326 17124630 -131658842 + L1ME LINE L1 5385 5716 -405 803 218 89 21 chr11 17124698 17124897 -131658575 + L1MB5 LINE L1 4562 4787 -1359 1722 185 10 22 chr11 17124897 17125211 -131658261 + AluJb SINE Alu 1 310 -2 803 218 89 21 chr11 17125211 17125291 -131658181 + L1MB5 LINE L1 4787 4860 -1286 693 112 0 0 chr11 17125309 17125407 -131658065 - U6 snRNA snRNA -9 98 1 3284 179 84 20 chr11 17125409 17126235 -131657237 + L1MB5 LINE L1 4846 5768 -406 2501 61 0 0 chr11 17126235 17126532 -131656940 - AluY SINE Alu -14 297 1 3284 179 84 20 chr11 17126532 17126865 -131656607 + L1MB5 LINE L1 5768 6078 -96 2613 49 3 0 chr11 17127352 17127657 -131655815 - AluY SINE Alu -5 306 1 1896 163 3 7 chr11 17127711 17128017 -131655455 - AluJb SINE Alu -7 305 1 223 188 0 21 chr11 17129861 17129909 -131653563 - L2 LINE L2 -4 3309 3263 222 91 0 0 chr11 17130135 17130168 -131653304 + (CATATA)n Simple_repeat Simple_repeat 1 33 0 247 221 105 12 chr11 17130326 17130412 -131653060 - L1MC4a LINE L1 -1846 5962 5869 1292 86 0 0 chr11 17130448 17130610 -131652862 - AluSg/x SINE Alu -6 304 143 354 173 14 14 chr11 17130611 17130692 -131652780 - Alu SINE Alu -248 51 1 413 289 120 29 chr11 17130701 17130749 -131652723 - L1MC4a LINE L1 -2020 5788 5746 1764 180 3 0 chr11 17130749 17131061 -131652411 - AluJo SINE Alu 0 313 1 413 289 120 29 chr11 17131061 17131461 -131652011 - L1MC4a LINE L1 -2062 5746 5298 24 32 0 0 chr11 17131605 17131636 -131651836 + AT_rich Low_complexity Low_complexity 1 31 0 1574 175 7 41 chr11 17132893 17133204 -131650268 - AluJb SINE Alu 0 301 1 717 229 16 27 chr11 17133236 17133424 -131650048 - MER58A DNA MER1_type -1 223 38 455 151 14 0 chr11 17133704 17133777 -131649695 - FRAM SINE Alu -36 140 67 608 198 71 52 chr11 17133833 17134101 -131649371 - L1MC5 LINE L1 -160 7801 7529 493 78 0 0 chr11 17134103 17134167 -131649305 - Alu SINE Alu -14 296 233 661 201 138 17 chr11 17134256 17134430 -131649042 + MER58A DNA MER1_type 30 224 0 641 188 87 46 chr11 17134437 17134655 -131648817 - L1MC5 LINE L1 -472 7489 7263 311 170 0 110 chr11 17134847 17134869 -131648603 - L1MC5 LINE L1 -741 7220 7197 1215 168 53 0 chr11 17134869 17135077 -131648395 + MER20 DNA MER1_type 1 219 0 311 170 0 110 chr11 17135077 17135154 -131648318 - L1MC5 LINE L1 -764 7197 7132 1785 112 64 19 chr11 17135168 17135435 -131648037 - AluSg SINE Alu -21 289 11 2120 147 3 0 chr11 17135489 17135796 -131647676 + AluSx SINE Alu 2 309 -3 278 265 49 0 chr11 17135797 17135899 -131647573 - L1MC5 LINE L1 -852 7109 7003 601 132 23 62 chr11 17135913 17136042 -131647430 + AluJb SINE Alu 2 125 -187 21 0 0 0 chr11 17136609 17136630 -131646842 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr11 17136920 17136953 -131646519 + AT_rich Low_complexity Low_complexity 1 33 0 2267 117 0 0 chr11 17136956 17137254 -131646218 - AluSx SINE Alu -14 298 1 852 249 36 12 chr11 17137554 17137807 -131645665 + MIR SINE MIR 3 261 -1 1357 167 4 17 chr11 17137951 17138185 -131645287 - AluSx SINE Alu -81 231 1 2172 93 21 3 chr11 17139237 17139528 -131643944 - AluSq SINE Alu -12 301 6 24 67 0 0 chr11 17139598 17139643 -131643829 + AT_rich Low_complexity Low_complexity 1 45 0 223 154 0 26 chr11 17139821 17139860 -131643612 + CT-rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr11 17140035 17140063 -131643409 + AT_rich Low_complexity Low_complexity 1 28 0 2401 105 0 6 chr11 17140169 17140483 -131642989 + AluSx SINE Alu 1 312 0 2287 98 0 3 chr11 17140551 17140848 -131642624 + AluSq SINE Alu 1 296 -17 2501 70 0 0 chr11 17141066 17141366 -131642106 - AluY SINE Alu -11 300 1 2849 13 0 0 chr11 17141961 17142272 -131641200 - AluYb8 SINE Alu -7 311 1 245 240 0 0 chr11 17142877 17142927 -131640545 + (TG)n Simple_repeat Simple_repeat 1 50 0 401 292 58 8 chr11 17142987 17143107 -131640365 + L2 LINE L2 3187 3312 -1 2166 130 0 0 chr11 17143289 17143582 -131639890 + AluSx SINE Alu 1 293 -19 1707 149 23 30 chr11 17143850 17144011 -131639461 - AluJo SINE Alu -12 300 140 2237 105 10 0 chr11 17144011 17144305 -131639167 - AluSp SINE Alu -16 297 1 1707 149 23 30 chr11 17144305 17144445 -131639027 - AluJo SINE Alu -172 140 1 315 0 0 0 chr11 17145322 17145357 -131638115 + (TG)n Simple_repeat Simple_repeat 2 36 0 28 0 0 0 chr11 17146265 17146293 -131637179 + AT_rich Low_complexity Low_complexity 1 28 0 2339 81 20 0 chr11 17147062 17147357 -131636115 - AluSx SINE Alu -11 301 1 457 251 5 82 chr11 17147372 17147567 -131635905 + LTR41 LTR ERVL 2 181 -592 1139 189 9 40 chr11 17148276 17148504 -131634968 - MER58A DNA MER1_type -3 221 1 2308 80 0 17 chr11 17148560 17148860 -131634612 - AluSq SINE Alu -18 295 1 2049 126 14 0 chr11 17148881 17149167 -131634305 - AluSx SINE Alu -18 294 5 713 199 0 22 chr11 17149781 17149917 -131633555 + FLAM_A SINE Alu 1 133 0 1958 222 39 16 chr11 17149965 17150482 -131632990 + L1MB8 LINE L1 5648 6176 -2 459 333 185 4 chr11 17150493 17150848 -131632624 - L2 LINE L2 -214 3099 2691 1102 153 38 0 chr11 17150914 17151097 -131632375 - AluSg/x SINE Alu -1 309 120 784 207 52 17 chr11 17151103 17151382 -131632090 - L1MD3 LINE L1 -8 7987 7488 1829 261 126 36 chr11 17151383 17151633 -131631839 - L2 LINE L2 -632 2682 2456 549 149 44 18 chr11 17151633 17151747 -131631725 + L1MC1 LINE L1 6217 6333 0 1829 261 126 36 chr11 17151747 17152181 -131631291 - L2 LINE L2 -858 2456 1937 424 191 0 5 chr11 17152185 17152365 -131631107 + AluJo SINE Alu 5 279 -33 219 36 0 0 chr11 17152365 17152393 -131631079 + (TCCA)n Simple_repeat Simple_repeat 3 30 0 803 235 86 8 chr11 17152397 17152631 -131630841 - L2 LINE L2 -1374 1940 1689 468 281 231 46 chr11 17152635 17153137 -131630335 + L2 LINE L2 2158 2752 -562 489 217 19 0 chr11 17153141 17153247 -131630225 - MER58B DNA MER1_type 0 341 234 2105 142 7 0 chr11 17153303 17153612 -131629860 + AluSx SINE Alu 1 311 -1 21 0 0 0 chr11 17153630 17153651 -131629821 + AT_rich Low_complexity Low_complexity 1 21 0 282 350 124 62 chr11 17153844 17154135 -131629337 + L2 LINE L2 2963 3271 -1 2191 125 3 3 chr11 17154259 17154570 -131628902 + AluSx SINE Alu 1 311 -1 2229 74 16 3 chr11 17154577 17154887 -131628585 + THE1C-int LTR MaLR 1263 1576 -4 1553 142 86 10 chr11 17154891 17155194 -131628278 + THE1C LTR MaLR 1 326 -49 1857 163 0 26 chr11 17156082 17156388 -131627084 + AluSx SINE Alu 5 302 -10 2104 97 38 0 chr11 17157583 17157871 -131625601 + AluSp SINE Alu 1 299 -14 635 106 0 92 chr11 17158509 17158650 -131624822 - Charlie5 DNA MER1_type 0 2624 2497 1228 140 36 9 chr11 17158650 17158871 -131624601 - MER2 DNA MER2_type 0 345 119 236 79 26 0 chr11 17158871 17158909 -131624563 + L1MA2 LINE L1 6225 6263 -41 308 97 0 32 chr11 17158928 17158990 -131624482 + L1MA3 LINE L1 6246 6305 0 708 181 14 0 chr11 17158996 17159134 -131624338 - MER2 DNA MER2_type -190 155 16 499 159 0 0 chr11 17159297 17159385 -131624087 + AluS SINE Alu 221 308 -4 22 56 0 0 chr11 17159655 17159691 -131623781 + AT_rich Low_complexity Low_complexity 1 36 0 1029 249 5 5 chr11 17161189 17161410 -131622062 + MIR SINE MIR 21 241 -21 349 115 49 0 chr11 17161502 17161563 -131621909 + MSTB1 LTR MaLR 369 432 0 544 110 30 0 chr11 17161789 17161889 -131621583 + L1MB3 LINE L1 6081 6183 0 2156 131 0 13 chr11 17162796 17163101 -131620371 + AluSq SINE Alu 1 301 -12 347 235 25 0 chr11 17163208 17163289 -131620183 - MIR3 SINE MIR 0 208 126 195 42 0 0 chr11 17163723 17163747 -131619725 + (TG)n Simple_repeat Simple_repeat 2 25 0 203 173 27 53 chr11 17164342 17164417 -131619055 + GA-rich Low_complexity Low_complexity 5 77 0 275 308 75 50 chr11 17164586 17164706 -131618766 + MIR SINE MIR 21 143 -65 29 28 0 0 chr11 17165075 17165111 -131618361 + AT_rich Low_complexity Low_complexity 1 36 0 22 70 0 0 chr11 17165384 17165427 -131618045 + AT_rich Low_complexity Low_complexity 1 43 0 1516 183 16 0 chr11 17166032 17166284 -131617188 - AluJb SINE Alu -11 301 46 649 252 0 0 chr11 17166505 17166632 -131616840 + FLAM_A SINE Alu 1 127 -6 2176 93 0 0 chr11 17166858 17167128 -131616344 + AluSx SINE Alu 35 304 -8 39 0 0 20 chr11 17167703 17167714 -131615758 + AT_rich Low_complexity Low_complexity 1 11 -38 2427 62 7 0 chr11 17167714 17168004 -131615468 + AluSp SINE Alu 1 292 -21 39 0 0 20 chr11 17168004 17168042 -131615430 + AT_rich Low_complexity Low_complexity 11 49 0 776 223 69 5 chr11 17168042 17168244 -131615228 - MIR SINE MIR -47 215 1 850 225 57 68 chr11 17169389 17169780 -131613692 - MLT2B1 LTR ERVL -67 397 1 1633 195 19 7 chr11 17170194 17170501 -131612971 + AluJb SINE Alu 1 311 -1 2244 108 0 16 chr11 17171700 17172015 -131611457 + AluSx SINE Alu 1 310 -2 2242 142 26 3 chr11 17172090 17172477 -131610995 + MER57A LTR ERV1 8 403 0 222 259 24 71 chr11 17172513 17172598 -131610874 - L3 LINE CR1 -196 1381 1301 2003 117 3 7 chr11 17172671 17172983 -131610489 + AluSx SINE Alu 1 311 0 1433 172 20 63 chr11 17173054 17173356 -131610116 - AluJo SINE Alu -19 293 5 213 274 0 20 chr11 17173628 17173679 -131609793 - MIR3 SINE MIR -48 160 111 252 303 92 9 chr11 17173684 17173793 -131609679 - L3 LINE CR1 -341 1236 1119 1144 200 0 10 chr11 17173820 17174025 -131609447 + AluJb SINE Alu 104 306 -6 265 302 16 0 chr11 17175059 17175122 -131608350 - L3 LINE CR1 -115 1462 1399 2286 80 10 10 chr11 17175151 17175453 -131608019 + AluSp SINE Alu 11 312 -1 508 179 179 34 chr11 17175549 17175784 -131607688 - L1MC5 LINE L1 -48 7913 7645 358 218 13 13 chr11 17175784 17175862 -131607610 + MIR SINE MIR 104 181 -81 1830 174 0 7 chr11 17176624 17176911 -131606561 - AluJb SINE Alu -21 291 7 2077 119 7 0 chr11 17176985 17177270 -131606202 + AluSp SINE Alu 1 287 -26 2469 78 0 0 chr11 17177944 17178250 -131605222 + AluY SINE Alu 1 306 -5 419 311 122 25 chr11 17180398 17180466 -131603006 + MIR SINE MIR 2 62 -200 2511 60 0 0 chr11 17180466 17180764 -131602708 + AluY SINE Alu 1 298 -13 419 311 122 25 chr11 17180764 17180933 -131602539 + MIR SINE MIR 62 262 0 620 135 108 36 chr11 17181431 17181542 -131601930 - FLAM_C SINE Alu -13 120 2 329 226 38 108 chr11 17181545 17181731 -131601741 + L1MC4 LINE L1 7869 8041 -1 726 260 76 70 chr11 17181766 17182181 -131601291 + MLT1H LTR MaLR 41 471 -78 230 360 0 11 chr11 17182637 17182726 -131600746 + L2 LINE L2 2966 3053 -219 1168 262 70 12 chr11 17182956 17183300 -131600172 + MLT1K LTR MaLR 225 588 0 2088 86 0 76 chr11 17183442 17183770 -131599702 - AluSx SINE Alu 0 305 1 2039 105 7 11 chr11 17183955 17184268 -131599204 + AluSq SINE Alu 8 319 0 2163 116 0 10 chr11 17185333 17185635 -131597837 - AluSx SINE Alu -13 299 1 605 171 106 8 chr11 17185674 17185797 -131597675 + AluJo SINE Alu 1 135 -177 1599 193 13 29 chr11 17185823 17186139 -131597333 + AluJo SINE Alu 1 311 -1 762 249 69 11 chr11 17186233 17186422 -131597050 - MIR SINE MIR -27 235 36 24 53 0 0 chr11 17186513 17186551 -131596921 + AT_rich Low_complexity Low_complexity 1 38 0 520 162 87 53 chr11 17187111 17187135 -131596337 - MER33 DNA MER1_type -2264 360 338 2195 139 0 0 chr11 17187135 17187444 -131596028 + AluSx SINE Alu 1 309 -3 520 162 87 53 chr11 17187444 17187668 -131595804 - MER33 DNA MER1_type -2286 338 23 24 0 0 0 chr11 17187832 17187856 -131595616 + AT_rich Low_complexity Low_complexity 1 24 0 1869 107 89 15 chr11 17187893 17188026 -131595446 - AluSx SINE Alu -22 290 168 2865 16 0 0 chr11 17188026 17188344 -131595128 - AluYb8 SINE Alu 0 318 1 1869 107 89 15 chr11 17188344 17188480 -131594992 - AluSx SINE Alu -144 168 1 1721 188 3 7 chr11 17188490 17188777 -131594695 - AluJo SINE Alu -26 286 1 1457 200 33 7 chr11 17188949 17189224 -131594248 - AluJo SINE Alu -30 282 1 291 324 0 0 chr11 17189400 17189468 -131594004 - L2 LINE L2 0 3313 3246 964 195 62 38 chr11 17189492 17189702 -131593770 + AluJb SINE Alu 87 301 -11 212 0 36 0 chr11 17189811 17189839 -131593633 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1957 118 0 0 chr11 17189854 17190109 -131593363 + AluSx SINE Alu 1 255 -57 433 211 111 65 chr11 17190114 17190313 -131593159 - MER21B LTR ERV1 -225 638 431 1070 207 57 9 chr11 17190313 17190663 -131592809 - MER21B LTR ERV1 -364 499 104 243 226 79 113 chr11 17190685 17190803 -131592669 + L1ME3A LINE L1 5786 5906 -264 678 179 0 17 chr11 17190803 17190920 -131592552 + FLAM_A SINE Alu 5 119 -14 243 226 79 113 chr11 17190920 17190933 -131592539 + L1ME3A LINE L1 5906 5918 -252 525 16 0 0 chr11 17190933 17190995 -131592477 + (CA)n Simple_repeat Simple_repeat 2 63 0 243 226 79 113 chr11 17190995 17191039 -131592433 + L1ME3A LINE L1 5918 5956 -214 2306 100 3 3 chr11 17191097 17191396 -131592076 + AluSp SINE Alu 1 299 -14 393 316 63 11 chr11 17191396 17191561 -131591911 + L1ME3A LINE L1 5966 6142 -28 1686 155 67 7 chr11 17191590 17191874 -131591598 + AluJb SINE Alu 1 301 -11 1895 176 3 13 chr11 17192119 17192431 -131591041 - AluJb SINE Alu -3 309 1 829 166 79 67 chr11 17192474 17192681 -131590791 + MER44D DNA MER2_type 1 204 -2287 2230 94 16 16 chr11 17192681 17192988 -131590484 + AluSx SINE Alu 1 307 -5 829 166 79 67 chr11 17192988 17193032 -131590440 + MER44D DNA MER2_type 204 525 -84 308 250 42 0 chr11 17193032 17193104 -131590368 + Tigger3b DNA MER2_type 2 76 -1155 1425 179 6 79 chr11 17193104 17193422 -131590050 + AluJo SINE Alu 1 295 -17 4681 112 41 88 chr11 17193467 17193941 -131589531 + Tigger3b DNA MER2_type 286 692 -2336 1547 182 17 31 chr11 17193941 17194232 -131589240 + AluJo SINE Alu 1 287 -25 4681 112 41 88 chr11 17194232 17194749 -131588723 + Tigger3b DNA MER2_type 692 1231 0 508 121 0 44 chr11 17194749 17194839 -131588633 + MER44D DNA MER2_type 523 608 -1 1294 245 97 38 chr11 17195002 17195766 -131587706 + L2 LINE L2 2518 3309 -4 1461 134 119 22 chr11 17196081 17196349 -131587123 + AluJb SINE Alu 1 294 -18 1020 131 12 0 chr11 17196653 17196821 -131586651 - L1MB7 LINE L1 -2 6182 6013 2308 105 0 10 chr11 17197344 17197648 -131585824 + AluSx SINE Alu 1 301 -11 1626 129 0 0 chr11 17198622 17198847 -131584625 + AluSx SINE Alu 2 226 -86 546 147 73 0 chr11 17198879 17198988 -131584484 - L1MB7 LINE L1 -77 6107 5991 589 103 0 0 chr11 17199042 17199129 -131584343 + AluSx SINE Alu 222 308 -2 2284 97 7 0 chr11 17199272 17199560 -131583912 + AluSx SINE Alu 1 290 -22 273 189 19 85 chr11 17199567 17199585 -131583887 + L1MCc LINE L1 1437 1455 -4968 2205 88 24 14 chr11 17199585 17199879 -131583593 + AluSx SINE Alu 1 297 -15 273 189 19 85 chr11 17199879 17199966 -131583506 + L1MCc LINE L1 1455 1535 -4888 704 244 63 22 chr11 17199982 17200297 -131583175 + L1MCc LINE L1 1782 2109 -5013 926 274 127 46 chr11 17200507 17200988 -131582484 + MER77 LTR ERV1 80 599 -6 1493 188 3 45 chr11 17201139 17201448 -131582024 + AluJb SINE Alu 1 296 -16 2029 143 10 0 chr11 17201742 17202035 -131581437 - AluSx SINE Alu -16 296 1 1163 158 122 83 chr11 17202142 17202552 -131580920 + MSTC LTR MaLR 3 428 0 2357 90 0 0 chr11 17202854 17203154 -131580318 + AluSc SINE Alu 1 300 -9 986 62 0 7 chr11 17203154 17203298 -131580174 + (GGGGA)n Simple_repeat Simple_repeat 5 147 0 199 82 0 61 chr11 17203308 17203357 -131580115 + (GAAAA)n Simple_repeat Simple_repeat 2 47 0 370 289 54 60 chr11 17203931 17204066 -131579406 + MIR3 SINE MIR 42 177 -31 2191 120 3 0 chr11 17204066 17204367 -131579105 + AluSq SINE Alu 1 302 -11 370 289 54 60 chr11 17204367 17204397 -131579075 + MIR3 SINE MIR 177 206 -2 2228 115 0 0 chr11 17204573 17204868 -131578604 + AluSc SINE Alu 1 295 -14 1822 144 0 72 chr11 17204878 17205197 -131578275 + AluSx SINE Alu 1 296 -16 2312 103 0 0 chr11 17205199 17205509 -131577963 + AluY SINE Alu 1 310 -1 21 36 0 0 chr11 17205640 17205668 -131577804 + AT_rich Low_complexity Low_complexity 1 28 0 524 340 79 14 chr11 17205701 17205916 -131577556 - L2 LINE L2 -544 2770 2542 2331 53 0 33 chr11 17206020 17206319 -131577153 - AluY SINE Alu -21 290 2 456 149 0 0 chr11 17206458 17206532 -131576940 + AluS SINE Alu 1 74 -237 1585 122 9 0 chr11 17206532 17206761 -131576711 - AluJb SINE Alu -81 231 1 2225 100 0 7 chr11 17207554 17207853 -131575619 - AluSx SINE Alu -15 297 1 327 258 153 24 chr11 17207853 17207977 -131575495 + MIR SINE MIR 79 218 -44 799 261 0 0 chr11 17208090 17208243 -131575229 + FAM SINE Alu 2 154 -31 183 42 0 0 chr11 17208245 17208269 -131575203 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2196 125 0 0 chr11 17208280 17208577 -131574895 + AluSx SINE Alu 3 299 -13 2886 163 73 16 chr11 17208590 17209102 -131574370 + L1MB4 LINE L1 5373 5971 -209 1885 92 138 0 chr11 17209102 17209363 -131574109 + AluSc SINE Alu 1 297 -12 2886 163 73 16 chr11 17209363 17209452 -131574020 + L1MB4 LINE L1 5971 6053 -127 1349 92 0 0 chr11 17209464 17209637 -131573835 + AluSg/x SINE Alu 121 293 -19 323 141 22 133 chr11 17209744 17209879 -131573593 + L1MD3 LINE L1 7876 7995 0 1454 155 0 106 chr11 17209890 17210239 -131573233 + L1ME1 LINE L1 5849 6160 -6 2230 117 0 0 chr11 17210361 17210661 -131572811 + AluSx SINE Alu 1 300 -12 2389 104 0 0 chr11 17210684 17210992 -131572480 + AluSc SINE Alu 1 308 -1 2334 100 0 3 chr11 17211403 17211713 -131571759 + AluSx SINE Alu 1 309 -3 1558 189 46 0 chr11 17211739 17212019 -131571453 + AluJb SINE Alu 5 297 -15 196 287 161 34 chr11 17212020 17212146 -131571326 + MIR SINE MIR 23 170 -84 964 118 0 15 chr11 17212641 17212776 -131570696 + FLAM_C SINE Alu 1 133 0 801 97 19 0 chr11 17213117 17213220 -131570252 - AluJo/FRAM SINE Alu -21 291 187 2490 60 0 7 chr11 17213221 17213522 -131569950 + AluY SINE Alu 1 299 -12 237 313 16 0 chr11 17213523 17213587 -131569885 - AluJ/FLAM SINE Alu -237 65 1 693 210 34 0 chr11 17213587 17213733 -131569739 + MER33 DNA MER1_type 1 144 -100 259 294 64 18 chr11 17213810 17213919 -131569553 - MIR SINE MIR -75 133 19 2177 113 10 0 chr11 17214326 17214619 -131568853 + AluSx SINE Alu 1 296 -16 2297 93 0 16 chr11 17214620 17214933 -131568539 + AluSc SINE Alu 1 308 -1 1949 122 31 7 chr11 17215270 17215557 -131567915 + AluSx SINE Alu 2 295 -17 298 135 0 0 chr11 17215983 17216035 -131567437 + Alu SINE Alu 251 302 0 25 31 0 0 chr11 17216931 17216963 -131566509 + GC_rich Low_complexity Low_complexity 1 32 0 257 149 21 0 chr11 17218211 17218258 -131565214 - MIR SINE MIR -112 150 103 565 151 17 8 chr11 17218999 17219118 -131564354 + CT-rich Low_complexity Low_complexity 3 122 0 2201 92 0 3 chr11 17219582 17219865 -131563607 - AluSp SINE Alu -11 302 21 882 238 34 21 chr11 17220007 17220256 -131563216 - MIR SINE MIR -10 252 1 1806 150 59 3 chr11 17220388 17220675 -131562797 - AluSx SINE Alu -5 307 5 557 298 93 36 chr11 17220740 17220948 -131562524 - L2 LINE L2 -215 3057 2862 860 152 8 0 chr11 17220948 17221073 -131562399 - FLAM_C SINE Alu -7 126 1 557 298 93 36 chr11 17221073 17221320 -131562152 - L2 LINE L2 -410 2862 2582 2217 96 3 0 chr11 17221342 17221624 -131561848 + AluSq SINE Alu 12 294 -19 1685 182 86 138 chr11 17221792 17222364 -131561108 - MLT1F1 LTR MaLR 0 567 1 295 289 13 0 chr11 17222427 17222503 -131560969 - L2 LINE L2 -298 2974 2898 700 240 88 59 chr11 17222650 17222696 -131560776 + L1MC4a LINE L1 5670 5713 -408 1943 142 16 128 chr11 17222696 17222817 -131560655 - MLT1B LTR MaLR 0 390 257 2130 123 7 0 chr11 17222817 17223117 -131560355 - AluSx SINE Alu -10 302 1 1943 142 16 128 chr11 17223117 17223431 -131560041 - MLT1B LTR MaLR -133 257 4 1700 256 47 14 chr11 17223431 17223860 -131559612 - LTR47B LTR ERVL 0 443 1 700 240 88 59 chr11 17223860 17224288 -131559184 + L1MC4a LINE L1 5712 5896 -225 838 41 0 0 chr11 17224292 17224389 -131559083 + L1PA8 LINE L1 6073 6169 -3 2339 65 17 3 chr11 17224476 17224766 -131558706 + AluSg SINE Alu 1 294 -16 360 264 11 11 chr11 17224772 17224859 -131558613 + Tigger2 DNA MER2_type 2632 2718 0 1877 273 133 46 chr11 17225020 17225414 -131558058 + L2 LINE L2 1711 2069 -1245 2183 107 0 7 chr11 17225414 17225712 -131557760 - AluSx SINE Alu -16 296 1 1877 273 133 46 chr11 17225712 17226210 -131557262 + L2 LINE L2 2069 2681 -633 1856 139 0 4 chr11 17226247 17226520 -131556952 + AluJo SINE Alu 11 282 -30 1234 193 23 26 chr11 17226573 17226837 -131556635 + AluJo SINE Alu 42 304 -8 1230 266 97 30 chr11 17226839 17227397 -131556075 + L2 LINE L2 2708 3313 0 1887 181 0 0 chr11 17227486 17227785 -131555687 - AluJb SINE Alu -13 299 1 868 208 164 9 chr11 17228107 17228148 -131555324 - MIR SINE MIR 0 262 229 1973 141 0 3 chr11 17228148 17228490 -131554982 - AluJb SINE Alu 0 341 1 868 208 164 9 chr11 17228490 17228673 -131554799 - MIR SINE MIR -33 229 2 2080 184 56 37 chr11 17228806 17229107 -131554365 - Charlie4a DNA MER1_type -1453 508 193 2295 106 0 3 chr11 17229107 17229408 -131554064 + AluSx SINE Alu 1 300 -12 2080 184 56 37 chr11 17229408 17229589 -131553883 - Charlie4a DNA MER1_type -1768 193 17 2067 114 6 25 chr11 17229810 17230127 -131553345 + AluSq SINE Alu 1 311 -2 658 256 0 35 chr11 17230651 17230823 -131552649 - MIR SINE MIR 0 262 97 2144 122 0 7 chr11 17230979 17231282 -131552190 - AluSx SINE Alu -11 301 1 367 163 47 108 chr11 17231301 17231430 -131552042 - MLT1J1 LTR MaLR 0 446 326 516 236 65 0 chr11 17231516 17231639 -131551833 - MLT1J2 LTR MaLR -317 133 3 2563 54 0 0 chr11 17232680 17232977 -131550495 + AluY SINE Alu 1 297 -14 1351 108 0 0 chr11 17233398 17233574 -131549898 - AluSc SINE Alu -2 307 132 2222 100 0 50 chr11 17233574 17233893 -131549579 - AluSg SINE Alu -7 303 1 2446 77 3 0 chr11 17233893 17234189 -131549283 - AluSp SINE Alu -15 298 1 214 274 20 0 chr11 17234532 17234583 -131548889 + L2 LINE L2 3139 3190 -82 518 213 14 78 chr11 17234585 17234636 -131548836 - FLAM_A SINE Alu -170 132 79 2173 123 3 0 chr11 17234636 17234936 -131548536 - AluSg SINE Alu -9 301 1 518 213 14 78 chr11 17234936 17235025 -131548447 - FLAM_A SINE Alu -223 79 1 2272 112 0 0 chr11 17235612 17235916 -131547556 + AluSg SINE Alu 1 304 -6 472 169 0 0 chr11 17236035 17236126 -131547346 - AluJ/FRAM SINE Alu 0 312 226 * 796 195 86 46 chr11 17236122 17236296 -131547176 - AluSx SINE Alu -126 186 6 24 67 0 0 chr11 17236366 17236411 -131547061 + AT_rich Low_complexity Low_complexity 1 45 0 223 154 0 26 chr11 17236589 17236628 -131546844 + CT-rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr11 17236803 17236831 -131546641 + AT_rich Low_complexity Low_complexity 1 28 0 2407 102 0 6 chr11 17236937 17237251 -131546221 + AluSx SINE Alu 1 312 0 2293 98 0 3 chr11 17237319 17237616 -131545856 + AluSq SINE Alu 1 296 -17 2511 70 0 0 chr11 17237834 17238134 -131545338 - AluY SINE Alu -11 300 1 2884 13 0 0 chr11 17238729 17239040 -131544432 - AluYb8 SINE Alu -7 311 1 245 240 0 0 chr11 17239645 17239695 -131543777 + (TG)n Simple_repeat Simple_repeat 1 50 0 392 292 58 8 chr11 17239755 17239875 -131543597 + L2 LINE L2 3187 3312 -1 2153 130 0 0 chr11 17240057 17240350 -131543122 + AluSx SINE Alu 1 293 -19 1692 149 23 30 chr11 17240618 17240779 -131542693 - AluJo SINE Alu -12 300 140 2227 105 10 0 chr11 17240779 17241073 -131542399 - AluSp SINE Alu -16 297 1 1692 149 23 30 chr11 17241073 17241213 -131542259 - AluJo SINE Alu -172 140 1 315 0 0 0 chr11 17242090 17242125 -131541347 + (TG)n Simple_repeat Simple_repeat 2 36 0 28 0 0 0 chr11 17243033 17243061 -131540411 + AT_rich Low_complexity Low_complexity 1 28 0 2347 81 20 0 chr11 17243830 17244125 -131539347 - AluSx SINE Alu -11 301 1 529 251 5 82 chr11 17244140 17244335 -131539137 + LTR41 LTR ERVL 2 181 -592 1236 189 9 40 chr11 17245044 17245272 -131538200 - MER58A DNA MER1_type -3 221 1 2323 80 0 17 chr11 17245328 17245628 -131537844 - AluSq SINE Alu -18 295 1 2046 126 14 0 chr11 17245649 17245935 -131537537 - AluSx SINE Alu -18 294 5 765 199 0 22 chr11 17246549 17246685 -131536787 + FLAM_A SINE Alu 1 133 0 2188 222 39 16 chr11 17246733 17247250 -131536222 + L1MB8 LINE L1 5648 6176 -2 449 333 185 4 chr11 17247261 17247616 -131535856 - L2 LINE L2 -214 3099 2691 1085 153 38 0 chr11 17247682 17247865 -131535607 - AluSg/x SINE Alu -1 309 120 899 206 54 17 chr11 17247867 17248150 -131535322 - L1MD3 LINE L1 -1 7987 7488 1786 254 131 42 chr11 17248151 17248401 -131535071 - L2 LINE L2 -632 2682 2456 606 149 44 18 chr11 17248401 17248515 -131534957 + L1MC1 LINE L1 6217 6333 0 1786 254 131 42 chr11 17248515 17248949 -131534523 - L2 LINE L2 -858 2456 1937 451 191 0 5 chr11 17248953 17249133 -131534339 + AluJo SINE Alu 5 279 -33 219 36 0 0 chr11 17249133 17249161 -131534311 + (TCCA)n Simple_repeat Simple_repeat 3 30 0 800 235 86 8 chr11 17249165 17249399 -131534073 - L2 LINE L2 -1374 1940 1689 425 281 231 46 chr11 17249403 17249905 -131533567 + L2 LINE L2 2158 2752 -562 537 217 19 0 chr11 17249909 17250015 -131533457 - MER58B DNA MER1_type 0 341 234 2090 142 7 0 chr11 17250071 17250380 -131533092 + AluSx SINE Alu 1 311 -1 21 0 0 0 chr11 17250398 17250419 -131533053 + AT_rich Low_complexity Low_complexity 1 21 0 263 337 134 72 chr11 17250612 17250903 -131532569 + L2 LINE L2 2963 3271 -1 2390 92 17 6 chr11 17250999 17251027 -131532445 + THE1C-int LTR MaLR 1263 1289 -291 2174 125 3 3 chr11 17251027 17251338 -131532134 + AluSx SINE Alu 1 311 -1 2390 92 17 6 chr11 17251338 17251655 -131531817 + THE1C-int LTR MaLR 1289 1576 -4 1689 142 86 10 chr11 17251659 17251962 -131531510 + THE1C LTR MaLR 1 326 -49 1839 163 0 26 chr11 17252850 17253156 -131530316 + AluSx SINE Alu 5 302 -10 2110 97 38 0 chr11 17254351 17254639 -131528833 + AluSp SINE Alu 1 299 -14 707 112 0 91 chr11 17255277 17255418 -131528054 - Charlie5 DNA MER1_type -27 2585 2458 1337 149 47 8 chr11 17255418 17255653 -131527819 - MER2 DNA MER2_type 0 345 102 331 97 0 32 chr11 17255696 17255758 -131527714 + L1MA3 LINE L1 6246 6305 0 767 181 14 0 chr11 17255764 17255902 -131527570 - MER2 DNA MER2_type -190 155 16 540 159 0 0 chr11 17256065 17256153 -131527319 + AluS SINE Alu 221 308 -4 22 56 0 0 chr11 17256423 17256459 -131527013 + AT_rich Low_complexity Low_complexity 1 36 0 1029 249 5 5 chr11 17257957 17258178 -131525294 + MIR SINE MIR 21 241 -21 349 115 49 0 chr11 17258270 17258331 -131525141 + MSTB1 LTR MaLR 369 432 0 544 110 30 0 chr11 17258557 17258657 -131524815 + L1MB3 LINE L1 6081 6183 0 2156 131 0 13 chr11 17259564 17259869 -131523603 + AluSq SINE Alu 1 301 -12 347 235 25 0 chr11 17259976 17260057 -131523415 - MIR3 SINE MIR 0 208 126 195 42 0 0 chr11 17260491 17260515 -131522957 + (TG)n Simple_repeat Simple_repeat 2 25 0 203 173 27 53 chr11 17261110 17261185 -131522287 + GA-rich Low_complexity Low_complexity 5 77 0 275 308 75 50 chr11 17261354 17261474 -131521998 + MIR SINE MIR 21 143 -65 29 28 0 0 chr11 17261843 17261879 -131521593 + AT_rich Low_complexity Low_complexity 1 36 0 22 70 0 0 chr11 17262152 17262195 -131521277 + AT_rich Low_complexity Low_complexity 1 43 0 1516 183 16 0 chr11 17262800 17263052 -131520420 - AluJb SINE Alu -11 301 46 649 252 0 0 chr11 17263273 17263400 -131520072 + FLAM_A SINE Alu 1 127 -6 2176 93 0 0 chr11 17263626 17263896 -131519576 + AluSx SINE Alu 35 304 -8 39 0 0 20 chr11 17264471 17264482 -131518990 + AT_rich Low_complexity Low_complexity 1 11 -38 2427 62 7 0 chr11 17264482 17264772 -131518700 + AluSp SINE Alu 1 292 -21 39 0 0 20 chr11 17264772 17264810 -131518662 + AT_rich Low_complexity Low_complexity 11 49 0 776 223 69 5 chr11 17264810 17265012 -131518460 - MIR SINE MIR -47 215 1 850 225 57 68 chr11 17266157 17266548 -131516924 - MLT2B1 LTR ERVL -67 397 1 1633 195 19 7 chr11 17266962 17267269 -131516203 + AluJb SINE Alu 1 311 -1 2244 108 0 16 chr11 17268468 17268783 -131514689 + AluSx SINE Alu 1 310 -2 2242 142 26 3 chr11 17268858 17269245 -131514227 + MER57A LTR ERV1 8 403 0 222 259 24 71 chr11 17269281 17269366 -131514106 - L3 LINE CR1 -196 1381 1301 2003 117 3 7 chr11 17269439 17269751 -131513721 + AluSx SINE Alu 1 311 0 1433 172 20 63 chr11 17269822 17270124 -131513348 - AluJo SINE Alu -19 293 5 213 274 0 20 chr11 17270396 17270447 -131513025 - MIR3 SINE MIR -48 160 111 252 303 92 9 chr11 17270452 17270561 -131512911 - L3 LINE CR1 -341 1236 1119 1144 200 0 10 chr11 17270588 17270793 -131512679 + AluJb SINE Alu 104 306 -6 265 302 16 0 chr11 17271827 17271890 -131511582 - L3 LINE CR1 -115 1462 1399 2286 80 10 10 chr11 17271919 17272221 -131511251 + AluSp SINE Alu 11 312 -1 508 179 179 34 chr11 17272317 17272552 -131510920 - L1MC5 LINE L1 -48 7913 7645 358 218 13 13 chr11 17272552 17272630 -131510842 + MIR SINE MIR 104 181 -81 1830 174 0 7 chr11 17273392 17273679 -131509793 - AluJb SINE Alu -21 291 7 2077 119 7 0 chr11 17273753 17274038 -131509434 + AluSp SINE Alu 1 287 -26 2469 78 0 0 chr11 17274712 17275018 -131508454 + AluY SINE Alu 1 306 -5 419 311 122 25 chr11 17277166 17277234 -131506238 + MIR SINE MIR 2 62 -200 2511 60 0 0 chr11 17277234 17277532 -131505940 + AluY SINE Alu 1 298 -13 419 311 122 25 chr11 17277532 17277701 -131505771 + MIR SINE MIR 62 262 0 620 135 108 36 chr11 17278199 17278310 -131505162 - FLAM_C SINE Alu -13 120 2 329 226 38 108 chr11 17278313 17278499 -131504973 + L1MC4 LINE L1 7869 8041 -1 726 260 76 70 chr11 17278534 17278949 -131504523 + MLT1H LTR MaLR 41 471 -78 239 348 0 11 chr11 17279405 17279494 -131503978 + L2 LINE L2 2966 3053 -219 1168 262 70 12 chr11 17279724 17280068 -131503404 + MLT1K LTR MaLR 225 588 0 2099 82 0 76 chr11 17280210 17280538 -131502934 - AluSx SINE Alu 0 305 1 2682 7 0 23 chr11 17280718 17281027 -131502445 + AluYa5 SINE Alu 1 302 -9 1995 105 11 11 chr11 17281036 17281348 -131502124 + AluSq SINE Alu 8 319 0 2173 116 0 10 chr11 17282415 17282718 -131500754 - AluSx SINE Alu -12 300 1 581 165 102 39 chr11 17282757 17282884 -131500588 + AluJo SINE Alu 1 135 -177 1599 193 13 29 chr11 17282910 17283226 -131500246 + AluJo SINE Alu 1 311 -1 762 249 69 11 chr11 17283320 17283509 -131499963 - MIR SINE MIR -27 235 36 24 53 0 0 chr11 17283600 17283638 -131499834 + AT_rich Low_complexity Low_complexity 1 38 0 520 161 87 55 chr11 17284198 17284222 -131499250 - MER33 DNA MER1_type -2264 321 299 2220 138 0 0 chr11 17284222 17284534 -131498938 + AluSx SINE Alu 1 312 0 520 161 87 55 chr11 17284534 17284759 -131498713 - MER33 DNA MER1_type -2286 299 23 24 0 0 0 chr11 17284923 17284947 -131498525 + AT_rich Low_complexity Low_complexity 1 24 0 1791 101 94 43 chr11 17284984 17285123 -131498349 - AluSx SINE Alu -22 290 159 2891 9 0 0 chr11 17285123 17285438 -131498034 - AluYb8 SINE Alu -3 315 1 1791 101 94 43 chr11 17285438 17285574 -131497898 - AluSx SINE Alu -153 159 1 1743 190 3 7 chr11 17285576 17285871 -131497601 - AluJo SINE Alu -18 294 1 1457 200 33 7 chr11 17286043 17286318 -131497154 - AluJo SINE Alu -30 282 1 291 324 0 0 chr11 17286494 17286562 -131496910 - L2 LINE L2 0 3313 3246 964 195 62 38 chr11 17286586 17286796 -131496676 + AluJb SINE Alu 87 301 -11 212 0 36 0 chr11 17286905 17286933 -131496539 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1957 118 0 0 chr11 17286949 17287204 -131496268 + AluSx SINE Alu 1 255 -57 433 211 111 65 chr11 17287209 17287408 -131496064 - MER21B LTR ERV1 -225 638 431 1070 207 57 9 chr11 17287408 17287758 -131495714 - MER21B LTR ERV1 -364 499 104 437 247 64 144 chr11 17287779 17287897 -131495575 + L1ME3A LINE L1 5786 5912 -258 667 181 0 17 chr11 17287897 17288013 -131495459 + FLAM_A SINE Alu 5 118 -15 513 0 0 0 chr11 17288013 17288070 -131495402 + (TA)n Simple_repeat Simple_repeat 1 57 0 399 21 0 0 chr11 17288069 17288117 -131495355 + (CA)n Simple_repeat Simple_repeat 2 49 0 437 247 64 144 chr11 17288070 17288219 -131495253 + L1ME3A LINE L1 5911 5965 -205 2313 100 3 3 chr11 17288219 17288518 -131494954 + AluSp SINE Alu 1 299 -14 437 247 64 144 chr11 17288518 17288683 -131494789 + L1ME3A LINE L1 5965 6142 -28 1686 155 67 7 chr11 17288712 17288996 -131494476 + AluJb SINE Alu 1 301 -11 1881 179 3 13 chr11 17289241 17289553 -131493919 - AluJb SINE Alu -3 309 1 835 166 79 67 chr11 17289596 17289803 -131493669 + MER44D DNA MER2_type 1 204 -2287 2195 94 16 19 chr11 17289803 17290111 -131493361 + AluSx SINE Alu 1 307 -5 835 166 79 67 chr11 17290111 17290155 -131493317 + MER44D DNA MER2_type 204 525 -84 308 250 42 0 chr11 17290155 17290227 -131493245 + Tigger3b DNA MER2_type 2 76 -1155 1431 180 6 76 chr11 17290227 17290544 -131492928 + AluJo SINE Alu 1 295 -17 4684 113 41 87 chr11 17290589 17291062 -131492410 + Tigger3b DNA MER2_type 286 692 -2336 1547 182 17 31 chr11 17291062 17291353 -131492119 + AluJo SINE Alu 1 287 -25 4684 113 41 87 chr11 17291353 17291870 -131491602 + Tigger3b DNA MER2_type 692 1231 0 467 143 0 44 chr11 17291870 17291960 -131491512 + MER44D DNA MER2_type 619 704 -1 1276 244 99 40 chr11 17292123 17292887 -131490585 + L2 LINE L2 2518 3309 -4 1461 134 119 22 chr11 17293202 17293470 -131490002 + AluJb SINE Alu 1 294 -18 214 346 10 30 chr11 17293470 17293571 -131489901 - L2 LINE L2 -1031 2283 2185 1020 131 12 0 chr11 17293774 17293942 -131489530 - L1MB7 LINE L1 -2 6182 6013 2308 105 0 10 chr11 17294465 17294769 -131488703 + AluSx SINE Alu 1 301 -11 1626 129 0 0 chr11 17295743 17295968 -131487504 + AluSx SINE Alu 2 226 -86 546 147 73 0 chr11 17296000 17296109 -131487363 - L1MB7 LINE L1 -77 6107 5991 570 108 0 0 chr11 17296163 17296246 -131487226 + AluSx SINE Alu 223 305 -6 663 278 52 51 chr11 17296247 17296392 -131487080 + L1MEc LINE L1 793 936 -5460 2284 97 7 0 chr11 17296392 17296680 -131486792 + AluSx SINE Alu 1 290 -22 663 278 52 51 chr11 17296680 17296705 -131486767 + L1MEc LINE L1 936 959 -5437 2225 85 24 14 chr11 17296705 17297000 -131486472 + AluSx SINE Alu 1 298 -14 663 278 52 51 chr11 17297000 17297418 -131486054 + L1MEc LINE L1 959 1383 -5013 926 274 127 46 chr11 17297628 17298109 -131485363 + MER77 LTR ERV1 80 599 -6 1480 191 3 45 chr11 17298260 17298569 -131484903 + AluJb SINE Alu 1 296 -16 1984 144 14 0 chr11 17298863 17299155 -131484317 - AluSx SINE Alu -16 296 1 1163 158 122 83 chr11 17299262 17299672 -131483800 + MSTC LTR MaLR 3 428 0 2208 90 0 0 chr11 17299974 17300329 -131483143 + AluSc SINE Alu 1 355 0 369 299 55 49 chr11 17300901 17301036 -131482436 + MIR3 SINE MIR 42 180 -28 2156 119 3 3 chr11 17301036 17301338 -131482134 + AluSq SINE Alu 1 302 -11 369 299 55 49 chr11 17301338 17301366 -131482106 + MIR3 SINE MIR 180 206 -2 1905 173 0 3 chr11 17301776 17302089 -131481383 - AluSx SINE Alu 0 312 1 2741 168 27 12 chr11 17302091 17302651 -131480821 - L1MB7 LINE L1 -69 6115 5548 2486 82 0 0 chr11 17302745 17303050 -131480422 - AluSq SINE Alu -8 305 1 1996 100 4 7 chr11 17303050 17303319 -131480153 - AluSx SINE Alu -7 305 38 1905 121 11 4 chr11 17303423 17303696 -131479776 + AluSx SINE Alu 21 295 -17 26 0 0 0 chr11 17303752 17303778 -131479694 + AT_rich Low_complexity Low_complexity 1 26 0 2104 128 10 0 chr11 17303864 17304169 -131479303 + AluSx SINE Alu 1 308 -4 207 0 0 0 chr11 17304344 17304367 -131479105 + (A)n Simple_repeat Simple_repeat 1 23 0 1836 145 43 0 chr11 17304450 17304732 -131478740 + AluJo SINE Alu 3 296 -16 2316 95 0 0 chr11 17304814 17305109 -131478363 + AluSg SINE Alu 1 295 -15 1034 211 0 0 chr11 17305123 17305298 -131478174 - FAM SINE Alu 0 175 1 943 268 49 27 chr11 17305818 17306147 -131477325 + MER102b DNA MER1_type 1 336 -5 2663 119 74 43 chr11 17306379 17306430 -131477042 + MER34 LTR ERV1 12 60 -482 261 0 0 0 chr11 17306430 17306459 -131477013 + (TA)n Simple_repeat Simple_repeat 2 30 0 2198 124 0 3 chr11 17306459 17306765 -131476707 - AluSg SINE Alu -5 305 1 2663 119 74 43 chr11 17306765 17307223 -131476249 + MER34 LTR ERV1 59 538 -4 740 199 0 0 chr11 17307372 17307503 -131475969 + FLAM_C SINE Alu 1 131 -12 2284 120 0 0 chr11 17307801 17308110 -131475362 + AluSg SINE Alu 1 309 -1 1436 190 50 0 chr11 17308402 17308681 -131474791 - AluJb SINE Alu -15 297 5 2205 97 3 3 chr11 17308707 17309015 -131474457 - AluSx SINE Alu -4 308 1 2264 107 0 0 chr11 17309433 17309742 -131473730 - AluSc SINE Alu 0 309 1 2115 117 0 0 chr11 17309765 17310065 -131473407 - AluSx SINE Alu -12 300 1 1425 155 0 106 chr11 17310187 17310536 -131472936 - L1ME1 LINE L1 -6 6160 5849 298 156 15 126 chr11 17310549 17310684 -131472788 - L1MC4 LINE L1 0 8019 7876 1318 86 0 0 chr11 17310791 17310965 -131472507 - AluSg/x SINE Alu -18 294 121 2800 162 73 18 chr11 17310977 17311066 -131472406 - L1MB4 LINE L1 -127 6053 5970 1691 92 146 0 chr11 17311066 17311326 -131472146 - AluSc SINE Alu -11 298 1 2800 162 73 18 chr11 17311326 17311839 -131471633 - L1MB4 LINE L1 -210 5970 5373 2084 125 0 0 chr11 17311852 17312149 -131471323 - AluSx SINE Alu -13 299 3 183 42 0 0 chr11 17312162 17312186 -131471286 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 748 255 0 0 chr11 17312188 17312337 -131471135 - FAM SINE Alu -31 154 6 341 266 153 24 chr11 17312454 17312578 -131470894 - MIR SINE MIR -44 218 79 2142 101 0 3 chr11 17312578 17312875 -131470597 + AluSx SINE Alu 1 296 -16 1422 123 18 0 chr11 17313668 17313895 -131469577 + AluJb SINE Alu 1 231 -81 464 151 0 0 chr11 17313895 17313968 -131469504 - AluS SINE Alu -235 74 2 2216 50 3 34 chr11 17314108 17314406 -131469066 + AluY SINE Alu 2 290 -21 513 349 79 14 chr11 17314510 17314725 -131468747 + L2 LINE L2 2542 2770 -544 21 36 0 0 chr11 17314758 17314786 -131468686 + AT_rich Low_complexity Low_complexity 1 28 0 2221 99 0 0 chr11 17314917 17315221 -131468251 - AluY SINE Alu -1 310 7 1713 142 0 72 chr11 17315229 17315547 -131467925 - AluSx SINE Alu -17 295 1 2174 92 3 0 chr11 17315557 17315852 -131467620 - AluSg SINE Alu -14 296 1 485 213 14 78 chr11 17316439 17316528 -131466944 + FLAM_A SINE Alu 1 79 -223 2067 123 3 0 chr11 17316528 17316828 -131466644 + AluSg SINE Alu 1 301 -9 485 213 14 78 chr11 17316828 17316879 -131466593 + FLAM_A SINE Alu 79 132 -170 256 286 172 50 chr11 17316881 17317224 -131466248 - L2 LINE L2 -82 3231 2847 2330 77 3 0 chr11 17317275 17317573 -131465899 + AluSp SINE Alu 1 299 -14 1743 112 18 35 chr11 17317573 17317858 -131465614 + AluSg SINE Alu 1 281 -29 252 296 0 28 chr11 17318306 17318377 -131465095 + L2 LINE L2 3204 3272 0 1306 178 13 0 chr11 17318460 17318691 -131464781 - AluJb SINE Alu -39 273 40 2177 150 16 25 chr11 17318802 17319168 -131464304 + MER44D DNA MER2_type 1 418 -187 1193 138 9 23 chr11 17319168 17319385 -131464087 - AluSq SINE Alu -12 301 88 497 78 0 0 chr11 17319387 17319451 -131464021 - AluSp/q SINE Alu -62 251 188 341 105 35 35 chr11 17319453 17319510 -131463962 + Tigger3b DNA MER2_type 44 100 -1131 240 100 0 0 chr11 17319535 17319575 -131463897 + (TG)n Simple_repeat Simple_repeat 1 40 0 822 191 0 8 chr11 17319575 17319699 -131463773 - FRAM SINE Alu -168 144 20 1123 124 0 0 chr11 17319716 17319877 -131463595 - AluSg/x SINE Alu -18 292 132 2104 120 3 0 chr11 17319877 17320178 -131463294 - AluSg SINE Alu -6 304 3 4364 113 95 29 chr11 17320178 17320217 -131463255 + Tigger3b DNA MER2_type 280 315 -2713 448 74 0 179 chr11 17320217 17320271 -131463201 - MADE1 DNA Mariner -2 78 46 1862 122 10 7 chr11 17320271 17320559 -131462913 + AluSq SINE Alu 4 292 -21 448 74 0 179 chr11 17320559 17320599 -131462873 - MADE1 DNA Mariner -34 46 1 4364 113 95 29 chr11 17320599 17320976 -131462496 + Tigger3b DNA MER2_type 315 665 -2363 2019 110 4 0 chr11 17320976 17321285 -131462187 + AluSx SINE Alu 1 310 0 4364 113 95 29 chr11 17321285 17321674 -131461798 + Tigger3b DNA MER2_type 665 1141 -90 4915 76 11 73 chr11 17321680 17322214 -131461258 + LTR8 LTR ERV1 3 480 -211 2021 107 13 7 chr11 17322214 17322523 -131460949 + AluSx SINE Alu 2 312 0 4915 76 11 73 chr11 17322523 17322723 -131460749 + LTR8 LTR ERV1 480 691 0 466 209 0 0 chr11 17322731 17322817 -131460655 + MER44D DNA MER2_type 618 703 -2 1617 130 63 18 chr11 17322917 17323202 -131460270 - AluSg SINE Alu -12 298 1 827 99 38 15 chr11 17323610 17323741 -131459731 - AluSq/x SINE Alu -177 135 2 2134 102 7 0 chr11 17323743 17324038 -131459434 - AluSx SINE Alu -15 297 1 266 83 0 0 chr11 17324182 17324218 -131459254 - tRNA-His-CAC tRNA tRNA -39 36 1 193 261 43 0 chr11 17324967 17325013 -131458459 - MIR SINE MIR -19 243 196 368 301 0 45 chr11 17325077 17325137 -131458335 + L1MC4a LINE L1 5797 5858 -1950 2120 118 0 3 chr11 17325137 17325434 -131458038 + AluSp SINE Alu 2 297 -16 368 301 0 45 chr11 17325434 17325506 -131457966 + L1MC4a LINE L1 5858 5923 -1885 267 254 0 0 chr11 17325517 17325572 -131457900 + L2 LINE L2 691 745 -2569 1207 237 58 62 chr11 17325588 17325647 -131457825 + L2 LINE L2 1169 1227 -2087 1588 167 37 10 chr11 17325647 17325941 -131457531 + AluJo SINE Alu 1 302 -10 1207 237 58 62 chr11 17325941 17326298 -131457174 + L2 LINE L2 1227 1583 -1731 231 194 39 175 chr11 17326446 17326549 -131456923 + MIR SINE MIR 18 106 -102 828 229 56 104 chr11 17326645 17327020 -131456452 - LTR67 LTR ERVL -3 554 198 790 159 8 15 chr11 17327159 17327291 -131456181 + FLAM_C SINE Alu 6 136 -7 22 0 0 30 chr11 17327291 17327305 -131456167 + AT_rich Low_complexity Low_complexity 1 14 -18 1972 128 0 17 chr11 17327305 17327603 -131455869 + AluSx SINE Alu 1 293 -19 22 0 0 30 chr11 17327603 17327621 -131455851 + AT_rich Low_complexity Low_complexity 14 32 0 1524 121 103 18 chr11 17327723 17327996 -131455476 - AluSx SINE Alu -14 298 3 2238 108 0 0 chr11 17328272 17328579 -131454893 - AluSx SINE Alu -3 309 3 2247 95 0 7 chr11 17328863 17329167 -131454305 - AluSg SINE Alu -8 302 1 415 321 74 37 chr11 17329221 17329411 -131454061 + MIR SINE MIR 65 261 -1 399 256 172 0 chr11 17329409 17329539 -131453933 - MIR SINE MIR -45 163 13 * 1923 114 6 25 chr11 17329801 17330116 -131453356 + AluSx SINE Alu 1 309 -3 1016 212 72 13 chr11 17330181 17330417 -131453055 + MIR SINE MIR 3 252 -10 1733 96 0 0 chr11 17331079 17331309 -131452163 + AluSg/x SINE Alu 81 310 0 295 253 114 0 chr11 17331437 17331516 -131451956 + MIR SINE MIR 33 120 -88 3414 35 0 0 chr11 17331674 17332076 -131451396 - L1PA4 LINE L1 -2 6153 5752 341 62 0 21 chr11 17332076 17332113 -131451359 + L1PA4 LINE L1 5705 5742 -413 191 386 11 0 chr11 17332113 17332201 -131451271 - MIR SINE MIR -63 145 57 1930 128 10 13 chr11 17332777 17333090 -131450382 - AluSx SINE Alu 0 312 1 1100 145 0 11 chr11 17333423 17333602 -131449870 - FRAM SINE Alu -1 175 1 599 258 0 15 chr11 17333958 17334090 -131449382 + FRAM SINE Alu 1 130 -46 670 147 0 53 chr11 17334093 17334283 -131449189 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 411 172 224 82 chr11 17334337 17334399 -131449073 + MER5A DNA MER1_type 9 61 -128 2136 114 0 0 chr11 17334399 17334697 -131448775 + AluSx SINE Alu 1 298 -14 411 172 224 82 chr11 17334697 17334768 -131448704 + MER5A DNA MER1_type 61 161 -28 2082 132 9 107 chr11 17334781 17334953 -131448519 - MLT1B LTR MaLR 0 390 203 1965 146 0 3 chr11 17334953 17335261 -131448211 - AluJb SINE Alu 0 312 6 2082 132 9 107 chr11 17335261 17335520 -131447952 - MLT1B LTR MaLR -187 203 1 1985 121 0 3 chr11 17335976 17336274 -131447198 - AluSx SINE Alu -2 310 14 628 269 94 0 chr11 17336319 17336479 -131446993 - MIR SINE MIR -84 178 4 201 239 0 0 chr11 17336596 17336642 -131446830 + (CAT)n Simple_repeat Simple_repeat 3 48 0 2109 109 0 0 chr11 17337023 17337347 -131446125 + AluSx SINE Alu 1 324 0 1086 138 0 0 chr11 17337532 17337699 -131445773 + AluSg/x SINE Alu 140 306 -6 524 161 0 0 chr11 17337819 17337906 -131445566 - AluJ/FRAM SINE Alu 0 312 226 315 196 0 0 chr11 17337906 17337952 -131445520 - Alu SINE Alu -254 47 2 2053 107 3 3 chr11 17337962 17338262 -131445210 - AluSx SINE Alu -12 300 1 369 280 76 0 chr11 17338324 17338442 -131445030 - L2 LINE L2 -2 3311 3185 234 273 36 0 chr11 17338532 17338587 -131444885 - L2 LINE L2 -16 3256 3200 2201 98 3 7 chr11 17339581 17339886 -131443586 + AluSx SINE Alu 1 304 -8 1191 181 16 20 chr11 17340029 17340283 -131443189 - AluJo SINE Alu -31 281 29 1596 176 7 3 chr11 17340300 17340595 -131442877 - AluJb SINE Alu -16 296 1 210 164 18 36 chr11 17340662 17340717 -131442755 + A-rich Low_complexity Low_complexity 2 55 0 2163 103 7 3 chr11 17340968 17341268 -131442204 + AluSx SINE Alu 1 301 -11 4704 124 12 20 chr11 17341269 17342021 -131441451 - L1MB3 LINE L1 -11 6172 5427 478 219 73 63 chr11 17342024 17342229 -131441243 - HAL1 LINE L1 -1 2506 2300 1978 133 0 0 chr11 17342240 17342526 -131440946 - AluSx SINE Alu -26 286 1 1175 173 0 0 chr11 17342528 17342725 -131440747 - AluSg/x SINE Alu -12 298 102 409 123 0 0 chr11 17342725 17342782 -131440690 - AluS SINE Alu -260 58 2 759 239 163 45 chr11 17342786 17343038 -131440434 - HAL1 LINE L1 -188 2319 2098 2218 112 0 3 chr11 17343038 17343352 -131440120 - AluSq SINE Alu 0 313 1 759 239 163 45 chr11 17343352 17343547 -131439925 - HAL1 LINE L1 -409 2098 1819 602 235 113 89 chr11 17343778 17343923 -131439549 - L1ME4a LINE L1 -29 6092 5952 213 39 0 0 chr11 17343923 17343949 -131439523 + (TG)n Simple_repeat Simple_repeat 2 27 0 602 235 113 89 chr11 17343949 17343987 -131439485 - L1ME4a LINE L1 -169 5952 5916 1845 117 71 0 chr11 17343987 17344270 -131439202 - AluSx SINE Alu -9 303 1 1631 190 0 13 chr11 17344270 17344570 -131438902 - AluJo SINE Alu -16 296 1 602 235 113 89 chr11 17344570 17344783 -131438689 - L1ME4a LINE L1 -205 5916 5710 1703 112 84 3 chr11 17344783 17345068 -131438404 - AluSg SINE Alu -2 308 1 2184 111 0 10 chr11 17345073 17345380 -131438092 - AluSx SINE Alu -8 304 1 602 235 113 89 chr11 17345380 17345477 -131437995 - L1ME4a LINE L1 -414 5707 5578 1671 160 0 40 chr11 17346076 17346401 -131437071 + AluJo SINE Alu 1 312 0 1783 166 0 0 chr11 17346415 17346710 -131436762 + AluJb SINE Alu 1 295 -17 1096 199 89 35 chr11 17346711 17346993 -131436479 - MER63B DNA MER1_type -136 300 4 679 180 96 71 chr11 17347073 17347105 -131436367 - L1MC5 LINE L1 -22 7939 7909 2103 118 0 0 chr11 17347105 17347411 -131436061 + AluY SINE Alu 1 306 -5 679 180 96 71 chr11 17347411 17347617 -131435855 - L1MC5 LINE L1 -52 7909 7695 1879 125 17 3 chr11 17347635 17347931 -131435541 + AluSx SINE Alu 1 300 -12 2345 74 0 3 chr11 17348178 17348477 -131434995 + AluSp SINE Alu 2 299 -14 745 311 139 33 chr11 17348494 17348649 -131434823 - L2 LINE L2 0 3313 3176 297 0 0 0 chr11 17348649 17348682 -131434790 + (CA)n Simple_repeat Simple_repeat 2 34 0 745 311 139 33 chr11 17348682 17349028 -131434444 - L2 LINE L2 -137 3176 2868 2431 78 0 0 chr11 17349028 17349334 -131434138 - AluSg SINE Alu -3 307 2 745 311 139 33 chr11 17349334 17349653 -131433819 - L2 LINE L2 -445 2868 2395 674 312 78 53 chr11 17349662 17350098 -131433374 - LTR16A LTR ERVL -3 447 1 2118 86 4 4 chr11 17350152 17350432 -131433040 + AluSx SINE Alu 1 280 -32 271 274 118 54 chr11 17350471 17350657 -131432815 - L2 LINE L2 -947 2367 2170 484 260 9 60 chr11 17350690 17350853 -131432619 + MER20B DNA MER1_type 43 201 -18 864 281 83 56 chr11 17350879 17351137 -131432335 - L2 LINE L2 -1157 2157 1907 1171 220 13 66 chr11 17351137 17351455 -131432017 + AluJo SINE Alu 2 302 0 864 281 83 56 chr11 17351455 17351479 -131431993 - L2 LINE L2 -1407 1907 1885 2190 92 0 0 chr11 17351479 17351772 -131431700 + AluSg1 SINE Alu 1 293 -16 864 281 83 56 chr11 17351772 17351933 -131431539 - L2 LINE L2 -1429 1885 1701 337 274 154 34 chr11 17352068 17352302 -131431170 - L2 LINE L2 -1611 1703 1442 269 279 138 100 chr11 17352307 17352547 -131430925 + MLT1L LTR MaLR 3 251 -364 1394 114 10 0 chr11 17352726 17352927 -131430545 - AluSq SINE Alu -110 203 1 950 174 23 55 chr11 17352936 17353155 -131430317 - AluJo SINE Alu -6 306 95 794 189 7 34 chr11 17353157 17353305 -131430167 - AluJo SINE Alu -167 145 2 2264 71 3 3 chr11 17353481 17353775 -131429697 - AluY SINE Alu -6 305 12 221 304 0 0 chr11 17353778 17353834 -131429638 + MER5A DNA MER1_type 128 183 -6 669 170 123 137 chr11 17353938 17354150 -131429322 - MER58A DNA MER1_type -15 209 1 198 0 0 0 chr11 17354167 17354189 -131429283 + (CAA)n Simple_repeat Simple_repeat 2 23 0 1915 115 54 0 chr11 17354275 17354554 -131428918 - AluSg SINE Alu -16 294 1 279 0 0 0 chr11 17355015 17355046 -131428426 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2137 110 0 16 chr11 17355058 17355376 -131428096 - AluSq SINE Alu 0 313 1 255 191 202 12 chr11 17355380 17355464 -131428008 - MIR SINE MIR -46 216 117 816 275 47 17 chr11 17355478 17355714 -131427758 - MIR SINE MIR -11 251 9 2033 124 3 7 chr11 17355944 17356266 -131427206 - AluSx SINE Alu 0 321 1 2292 92 0 13 chr11 17356583 17356898 -131426574 - AluSx SINE Alu -1 311 1 4711 99 6 4 chr11 17356918 17357583 -131425889 - L1PB2 LINE L1 -3 6148 5480 2024 128 7 0 chr11 17357583 17357888 -131425584 - AluSx SINE Alu -5 307 1 4711 99 6 4 chr11 17357888 17357900 -131425572 - L1PB2 LINE L1 -671 5480 5470 1223 142 8 56 chr11 17357900 17357964 -131425508 - L1PB2 LINE L1 -1334 4812 4746 2410 71 0 0 chr11 17357964 17358261 -131425211 - AluSq SINE Alu -15 298 2 1223 142 8 56 chr11 17358261 17358464 -131425008 - L1PB2 LINE L1 -1400 4746 4558 2087 254 78 19 chr11 17358483 17359177 -131424295 - L1PBa LINE L1 -6002 861 127 858 144 8 0 chr11 17359220 17359345 -131424127 + FLAM_C SINE Alu 1 126 -7 1003 154 0 35 chr11 17359469 17359613 -131423859 - 7SLRNA srpRNA srpRNA -23 297 158 2653 159 29 35 chr11 17359613 17359882 -131423590 + MER66B LTR ERV1 1 267 -219 2119 152 3 0 chr11 17359882 17360192 -131423280 + AluSx SINE Alu 1 311 -1 2653 159 29 35 chr11 17360192 17360411 -131423061 + MER66B LTR ERV1 267 486 0 1003 154 0 35 chr11 17360411 17360435 -131423037 - 7SLRNA srpRNA srpRNA -162 158 135 260 130 0 0 chr11 17360436 17360490 -131422982 - AluSp/q SINE Alu -1 302 249 1710 174 24 10 chr11 17360579 17360873 -131422599 + AluJb SINE Alu 1 298 -14 252 157 0 78 chr11 17360876 17360927 -131422545 + MIR SINE MIR 31 77 -131 466 281 148 10 chr11 17360933 17361129 -131422343 - MIR SINE MIR -3 259 37 948 173 59 170 chr11 17361196 17361537 -131421935 - AluSx SINE Alu -9 303 1 231 227 144 41 chr11 17361538 17361635 -131421837 - MIR SINE MIR -40 222 116 347 135 0 14 chr11 17361684 17361752 -131421720 + MIR3 SINE MIR 96 161 -47 312 338 161 39 chr11 17362265 17362730 -131420742 - L1M2 LINE L1 -5768 1081 560 201 147 0 0 chr11 17363096 17363130 -131420342 + (GA)n Simple_repeat Simple_repeat 1 34 0 2357 92 0 3 chr11 17363778 17364082 -131419390 - AluSx SINE Alu -7 305 3 2308 100 3 0 chr11 17364518 17364817 -131418655 + AluSq SINE Alu 1 300 -13 200 285 150 46 chr11 17364908 17365039 -131418433 + MIR3 SINE MIR 14 160 -48 680 180 25 0 chr11 17365041 17365163 -131418309 - Tigger7 DNA MER2_type 0 2487 2363 288 156 104 0 chr11 17365151 17365228 -131418244 - Tigger7 DNA MER2_type -168 2419 2335 * 349 172 0 0 chr11 17365223 17365281 -131418191 - Tigger7 DNA MER2_type -281 58 1 2100 129 0 23 chr11 17365387 17365697 -131417775 - AluJo SINE Alu -9 303 1 1859 176 0 3 chr11 17366362 17366669 -131416803 + AluJb SINE Alu 1 306 -6 1813 159 43 10 chr11 17366722 17367024 -131416448 - AluJb SINE Alu 0 312 1 399 282 101 20 chr11 17367113 17367262 -131416210 - MIR SINE MIR -7 255 95 336 64 0 0 chr11 17367815 17367862 -131415610 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 2097 142 0 7 chr11 17367863 17368165 -131415307 - AluSx SINE Alu -12 300 1 29 0 0 0 chr11 17368357 17368386 -131415086 + AT_rich Low_complexity Low_complexity 1 29 0 357 219 112 4 chr11 17368418 17368540 -131414932 + MIR SINE MIR 20 164 -58 498 266 71 63 chr11 17368623 17369040 -131414432 - MLT1J LTR MaLR -36 475 3 195 217 0 22 chr11 17369315 17369361 -131414111 - MIR SINE MIR 0 262 218 1984 125 38 0 chr11 17369635 17369922 -131413550 - AluSx SINE Alu -14 298 1 365 314 74 41 chr11 17370475 17370596 -131412876 + L2 LINE L2 3136 3260 -12 216 0 0 0 chr11 17370624 17370648 -131412824 + (CATA)n Simple_repeat Simple_repeat 2 25 0 2518 47 0 50 chr11 17370751 17370898 -131412574 + AluY SINE Alu 1 125 -186 2295 83 0 17 chr11 17370898 17371200 -131412272 + AluSc SINE Alu 1 297 -12 2518 47 0 50 chr11 17371200 17371372 -131412100 + AluY SINE Alu 125 304 -7 297 0 0 0 chr11 17371540 17371573 -131411899 + (CA)n Simple_repeat Simple_repeat 2 34 0 1852 156 0 10 chr11 17371646 17371941 -131411531 - AluJb SINE Alu -19 293 2 1107 189 9 32 chr11 17372733 17372950 -131410522 + AluJb SINE Alu 84 295 -17 2205 135 0 3 chr11 17372995 17373298 -131410174 + AluSx SINE Alu 1 302 -10 2163 124 7 0 chr11 17373323 17373622 -131409850 + AluSx SINE Alu 1 301 -11 769 248 105 6 chr11 17373634 17373948 -131409524 + HsTC2 DNA Tc2 1536 1880 -18 840 189 0 0 chr11 17373965 17374097 -131409375 - FRAM SINE Alu -44 132 1 2168 118 6 19 chr11 17374132 17374469 -131409003 - AluSx SINE Alu 0 333 1 729 0 0 0 chr11 17374495 17374576 -131408896 + (CA)n Simple_repeat Simple_repeat 2 82 0 2162 124 3 3 chr11 17374584 17374882 -131408590 - AluSx SINE Alu -14 298 1 3396 231 120 24 chr11 17374901 17376050 -131407422 - HsTC2 DNA Tc2 -569 1329 71 839 181 0 0 chr11 17376051 17376184 -131407288 + FLAM_C SINE Alu 1 133 0 331 298 81 0 chr11 17376278 17376402 -131407070 + L1M4 LINE L1 2477 2610 -3536 1384 178 3 21 chr11 17376533 17376820 -131406652 - L1MB7 LINE L1 -19 6165 5884 2408 100 3 0 chr11 17376889 17377200 -131406272 + AluSx SINE Alu 1 312 0 331 326 10 3 chr11 17377806 17377913 -131405559 - MIR SINE MIR -67 141 36 1063 180 11 16 chr11 17378075 17378264 -131405208 - MER5A DNA MER1_type 0 189 2 660 276 89 22 chr11 17378275 17378500 -131404972 + MIR SINE MIR 23 262 0 2387 97 0 0 chr11 17378612 17378912 -131404560 + AluSx SINE Alu 1 300 -12 3420 166 25 5 chr11 17379030 17379700 -131403772 + L1MB7 LINE L1 5485 6168 -16 478 275 105 53 chr11 17379860 17380031 -131403441 - MER5A DNA MER1_type -1 188 9 282 102 85 0 chr11 17380058 17380117 -131403355 + L1MB8 LINE L1 6115 6178 0 198 0 0 0 chr11 17380318 17380340 -131403132 + (A)n Simple_repeat Simple_repeat 1 22 0 2108 99 3 3 chr11 17380404 17380710 -131402762 + AluSp SINE Alu 1 306 0 184 243 0 19 chr11 17381108 17381211 -131402261 + (AAATG)n Simple_repeat Simple_repeat 5 105 0 756 195 0 0 chr11 17381897 17382020 -131401452 - FLAM_A SINE Alu -10 123 1 244 351 135 62 chr11 17382022 17382525 -131400947 - L2 LINE L2 -15 3257 2725 2389 94 0 0 chr11 17383442 17383740 -131399732 + AluSg SINE Alu 3 300 -10 624 183 79 0 chr11 17383744 17383870 -131399602 + AluJo SINE Alu 1 136 -176 23 0 0 0 chr11 17383870 17383893 -131399579 + AT_rich Low_complexity Low_complexity 1 23 0 1785 181 0 20 chr11 17383921 17384225 -131399247 + AluJo SINE Alu 1 298 -14 2146 145 0 0 chr11 17384326 17384636 -131398836 - AluSx SINE Alu -2 310 1 222 330 0 75 chr11 17384729 17384835 -131398637 + L2 LINE L2 1858 1955 -1359 550 214 137 0 chr11 17384867 17384998 -131398474 - MER5A DNA MER1_type -40 149 1 1351 126 0 0 chr11 17385259 17385434 -131398038 + AluJo SINE Alu 1 175 -137 22 35 0 0 chr11 17385563 17385592 -131397880 + AT_rich Low_complexity Low_complexity 1 29 0 1722 178 34 10 chr11 17385850 17386148 -131397324 - AluJo SINE Alu -7 305 1 1339 160 0 73 chr11 17386507 17386694 -131396778 - AluJo SINE Alu -1 311 149 2567 50 3 0 chr11 17386694 17386993 -131396479 - AluY SINE Alu -11 300 1 1339 160 0 73 chr11 17386993 17387080 -131396392 - AluJo SINE Alu -163 149 57 241 318 18 0 chr11 17387284 17387394 -131396078 + L1M4 LINE L1 3776 3887 -2259 2330 106 3 0 chr11 17387559 17387862 -131395610 + AluSx SINE Alu 2 305 -7 360 295 62 20 chr11 17387867 17388111 -131395361 + L1M4 LINE L1 3885 4138 -2008 37 0 0 0 chr11 17388115 17388152 -131395320 + AT_rich Low_complexity Low_complexity 1 37 0 2014 126 3 7 chr11 17388152 17388445 -131395027 - AluSx SINE Alu -17 295 4 489 318 23 37 chr11 17388446 17388927 -131394545 + L1M4 LINE L1 4131 4604 -1542 2300 121 0 0 chr11 17388996 17389301 -131394171 + AluSx SINE Alu 1 305 -7 258 292 28 42 chr11 17389412 17389563 -131393909 + L1P LINE L1 4745 4891 -1255 1753 176 3 19 chr11 17389563 17389876 -131393596 - AluJo SINE Alu 0 312 5 258 292 28 42 chr11 17389876 17390018 -131393454 + L1P LINE L1 4891 5034 -1112 305 217 0 0 chr11 17390096 17390156 -131393316 - L1MC4 LINE L1 -1061 6981 6922 509 264 64 8 chr11 17390218 17390343 -131393129 - MER5A DNA MER1_type -1 188 57 2239 103 20 3 chr11 17390589 17390891 -131392581 + AluSx SINE Alu 1 307 -5 832 143 0 15 chr11 17391025 17391158 -131392314 - FLAM_C SINE Alu -2 131 1 690 157 0 50 chr11 17391292 17391413 -131392059 - FLAM_C SINE Alu -17 116 2 1653 233 119 25 chr11 17391413 17391976 -131391496 - L1MC4 LINE L1 -1819 5989 5374 1342 267 22 11 chr11 17392090 17392547 -131390925 - L1MC4 LINE L1 -1127 6915 6454 1920 157 0 23 chr11 17392986 17393285 -131390187 + AluJb SINE Alu 1 292 -20 895 201 211 4 chr11 17393793 17394072 -131389400 + MER46C DNA MER2_type 1 337 -1 2066 107 10 32 chr11 17394309 17394617 -131388855 + AluSq SINE Alu 2 302 -11 1090 147 9 65 chr11 17396184 17396359 -131387113 - AluJo SINE Alu -8 304 121 2193 90 3 40 chr11 17396359 17396659 -131386813 - AluSx SINE Alu -14 298 10 2257 103 0 13 chr11 17396662 17396964 -131386508 - AluSx SINE Alu -14 298 1 1090 147 9 65 chr11 17396964 17397016 -131386456 - AluJo SINE Alu -193 119 86 301 148 19 0 chr11 17397017 17397071 -131386401 - AluJo SINE Alu -162 140 86 2067 140 0 0 chr11 17397201 17397487 -131385985 + AluSx SINE Alu 1 286 -26 1778 288 172 21 chr11 17397598 17398556 -131384916 + L2 LINE L2 1927 3029 -284 2315 89 0 7 chr11 17399900 17400221 -131383251 - AluSg1 SINE Alu 0 309 1 596 294 43 48 chr11 17400251 17400649 -131382823 - L1ME4a LINE L1 -207 5914 5519 25 31 0 0 chr11 17400733 17400765 -131382707 + AT_rich Low_complexity Low_complexity 1 32 0 446 259 18 9 chr11 17400786 17400898 -131382574 + MER81 DNA DNA 2 114 0 364 177 175 3 chr11 17401052 17401169 -131382303 - L1MC4 LINE L1 -5 9456 9320 188 111 28 0 chr11 17401228 17401264 -131382208 + (TATATG)n Simple_repeat Simple_repeat 3 39 0 793 248 131 0 chr11 17401274 17401556 -131381916 - L1MC4 LINE L1 -124 9337 9019 699 184 86 6 chr11 17401592 17401755 -131381717 - L1MC4a LINE L1 -424 8803 8628 669 143 103 24 chr11 17401788 17401914 -131381558 - FLAM_C SINE Alu -5 138 3 1748 141 0 97 chr11 17401926 17402266 -131381206 - AluSx SINE Alu -3 309 3 253 292 45 39 chr11 17402360 17402538 -131380934 - L1ME LINE L1 -348 5773 5595 916 206 30 0 chr11 17402543 17402742 -131380730 + L1MC4 LINE L1 6870 7074 -968 790 159 48 0 chr11 17402847 17402973 -131380499 + FLAM_A SINE Alu 1 132 -1 19136 163 51 31 chr11 17403019 17403671 -131379801 - L1MA2 LINE L1 -10 7713 7076 3069 93 4 35 chr11 17403671 17404156 -131379316 - L1PA13 LINE L1 -4 6159 5690 19136 163 51 31 chr11 17404156 17404341 -131379131 - L1MA2 LINE L1 -647 7076 6896 2028 113 50 0 chr11 17404341 17404623 -131378849 + AluSx SINE Alu 1 296 -16 19136 163 51 31 chr11 17404623 17408377 -131375095 - L1MA2 LINE L1 -827 6896 3220 2098 146 0 10 chr11 17408377 17408685 -131374787 - AluSx SINE Alu -7 305 1 19136 163 51 31 chr11 17408685 17408719 -131374753 - L1MA2 LINE L1 -4503 3220 3188 331 87 0 0 chr11 17408719 17408765 -131374707 + (TTTA)n Simple_repeat Simple_repeat 2 108 0 2164 105 3 7 chr11 17408765 17409050 -131374422 - AluSx SINE Alu -28 284 1 19136 163 51 31 chr11 17409050 17409933 -131373539 - L1MA2 LINE L1 -4535 3188 2324 2239 121 3 6 chr11 17409933 17410247 -131373225 - AluSp SINE Alu 0 313 1 19136 163 51 31 chr11 17410247 17410259 -131373213 - L1MA2 LINE L1 -5399 2324 2314 2497 81 0 3 chr11 17410259 17410567 -131372905 - AluSp SINE Alu -6 307 1 19136 163 51 31 chr11 17410567 17411026 -131372446 - L1MA2 LINE L1 -5409 2314 1866 1806 180 0 0 chr11 17411026 17411309 -131372163 - AluSx SINE Alu -29 283 1 19136 163 51 31 chr11 17411309 17413772 -131369700 - L1MA2 LINE L1 -5857 1866 66 421 218 23 52 chr11 17413822 17413996 -131369476 - L1MC4a LINE L1 -1758 6050 5882 249 33 0 0 chr11 17414413 17414443 -131369029 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 1679 177 0 0 chr11 17414451 17414717 -131368755 - AluJo SINE Alu -46 266 1 939 231 201 51 chr11 17415960 17416389 -131367083 - MLT1J LTR MaLR -2 509 17 1779 162 18 14 chr11 17416672 17416956 -131366516 - AluJo SINE Alu -23 289 5 594 288 133 39 chr11 17418088 17418494 -131364978 - LTR67 LTR ERVL 0 557 114 236 167 0 0 chr11 17418469 17418505 -131364967 - MLT1J LTR MaLR -377 134 99 * 2262 125 0 0 chr11 17418552 17418849 -131364623 + AluSx SINE Alu 1 297 -15 2288 105 0 0 chr11 17419452 17419747 -131363725 - AluSg SINE Alu -15 295 1 413 127 0 0 chr11 17419953 17420016 -131363456 - MER46A DNA MER2_type -1 235 173 1275 121 0 6 chr11 17420016 17420190 -131363282 - AluSx SINE Alu -139 173 1 605 213 12 31 chr11 17420190 17420350 -131363122 - MER46A DNA MER2_type -79 157 1 2759 7 0 0 chr11 17420438 17420731 -131362741 + AluY SINE Alu 19 311 0 24 32 0 0 chr11 17420847 17420878 -131362594 + AT_rich Low_complexity Low_complexity 1 31 0 1867 181 0 0 chr11 17420888 17421186 -131362286 - AluJo SINE Alu -14 298 1 1959 120 40 7 chr11 17421578 17421880 -131361592 - AluSq SINE Alu 0 311 1 21 0 0 0 chr11 17421942 17421963 -131361509 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 17422209 17422230 -131361242 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr11 17422470 17422504 -131360968 + AT_rich Low_complexity Low_complexity 1 34 0 2341 116 0 0 chr11 17422598 17422909 -131360563 - AluSx SINE Alu -1 311 1 2117 139 0 0 chr11 17422924 17423233 -131360239 - AluSx SINE Alu -3 309 1 26806 26 11 0 chr11 17423301 17427239 -131356233 - L1PA4 LINE L1 -5 6150 2171 2332 82 0 0 chr11 17429372 17429665 -131353807 + AluSg SINE Alu 1 293 -17 21 82 0 0 chr11 17429952 17430001 -131353471 + AT_rich Low_complexity Low_complexity 1 49 0 376 226 174 0 chr11 17430072 17430187 -131353285 - L3 LINE CR1 -3 1574 1440 455 173 8 12 chr11 17430204 17430319 -131353153 - MER5B DNA MER1_type 0 178 1 1028 201 62 25 chr11 17430594 17430838 -131352634 - L1MC4a LINE L1 -8 7800 7548 1788 123 147 72 chr11 17430890 17431264 -131352208 - MER4A LTR ERV1 0 664 263 424 153 94 12 chr11 17431279 17431364 -131352108 - MER4A LTR ERV1 -572 92 1 1499 204 67 15 chr11 17431378 17431784 -131351688 - L1MC4 LINE L1 -108 7934 7508 633 176 157 19 chr11 17431796 17432006 -131351466 + MER5C DNA MER1_type 9 247 -77 186 43 0 0 chr11 17432035 17432058 -131351414 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 506 165 136 0 chr11 17432077 17432180 -131351292 - FLAM_C SINE Alu -25 118 2 1945 159 3 19 chr11 17432267 17432582 -131350890 - AluJb SINE Alu -2 310 1 2408 92 0 3 chr11 17432718 17433022 -131350450 - AluSq SINE Alu -9 304 2 259 287 142 64 chr11 17433022 17433203 -131350269 - L3 LINE CR1 -193 1384 1170 1733 253 62 12 chr11 17433203 17433690 -131349782 - MLT1J LTR MaLR 0 511 1 259 287 142 64 chr11 17433690 17433804 -131349668 - L3 LINE CR1 -407 1170 1066 2466 81 0 25 chr11 17434029 17434349 -131349123 + AluSx SINE Alu 1 312 0 198 342 113 8 chr11 17434906 17435046 -131348426 - MIR SINE MIR -58 150 18 2466 62 16 0 chr11 17436112 17436418 -131347054 - AluY SINE Alu 0 311 1 239 261 54 11 chr11 17436814 17436906 -131346566 + L1MC/D LINE L1 5379 5474 -2311 23 33 0 0 chr11 17437486 17437516 -131345956 + GC_rich Low_complexity Low_complexity 1 30 0 270 81 0 0 chr11 17438480 17438517 -131344955 + (T)n Simple_repeat Simple_repeat 1 37 0 532 196 36 102 chr11 17439025 17439061 -131344411 + L1M4 LINE L1 4338 4375 -1771 1941 153 10 13 chr11 17439061 17439374 -131344098 + AluJo SINE Alu 1 312 0 532 196 36 102 chr11 17439374 17439519 -131343953 + L1M4 LINE L1 4375 4528 -1618 1395 170 43 117 chr11 17439519 17439731 -131343741 - MLT1A1 LTR MaLR 0 365 139 1628 192 0 11 chr11 17439731 17440044 -131343428 - AluJo SINE Alu 0 310 1 1395 170 43 117 chr11 17440044 17440069 -131343403 - MLT1A1 LTR MaLR -226 139 114 2382 103 0 3 chr11 17440069 17440380 -131343092 - AluSg SINE Alu 0 310 1 1395 170 43 117 chr11 17440380 17440534 -131342938 - MLT1A1 LTR MaLR -251 114 1 532 196 36 102 chr11 17440534 17440576 -131342896 + L1M4 LINE L1 4528 4547 -1599 2406 122 37 19 chr11 17441078 17441456 -131342016 - MLT1B LTR MaLR 0 390 6 1606 173 18 0 chr11 17441667 17441944 -131341528 - AluJo SINE Alu -30 282 1 5496 127 123 136 chr11 17441966 17442534 -131340938 - L1MC3 LINE L1 -8 7777 7203 287 235 10 39 chr11 17442534 17442636 -131340836 - MLT1F1 LTR MaLR -443 124 26 5496 127 123 136 chr11 17442636 17443443 -131340029 - L1MC3 LINE L1 -582 7203 6321 2310 110 7 13 chr11 17443443 17443753 -131339719 - AluSx SINE Alu -4 308 1 4265 197 82 107 chr11 17443755 17443893 -131339579 - L1MC/D LINE L1 -755 6186 6046 1473 150 53 9 chr11 17443893 17444119 -131339353 - AluJb SINE Alu -48 264 29 4265 197 82 107 chr11 17444119 17444720 -131338752 - L1MC/D LINE L1 -895 6046 5431 1513 178 4 4 chr11 17444720 17444978 -131338494 - AluJb SINE Alu -54 258 1 4265 197 82 107 chr11 17444978 17445231 -131338241 - L1MC/D LINE L1 -1510 5431 5173 2339 98 10 0 chr11 17445231 17445526 -131337946 - AluSx SINE Alu -14 298 1 4265 197 82 107 chr11 17445526 17445759 -131337713 - L1MC/D LINE L1 -1768 5173 4936 870 148 0 8 chr11 17445759 17445887 -131337585 - FLAM_C SINE Alu -16 127 1 4265 197 82 107 chr11 17445887 17446574 -131336898 - L1MC/D LINE L1 -2005 4936 4287 1189 78 11 6 chr11 17446620 17446626 -131336846 + (TTTC)n Simple_repeat Simple_repeat 1 186 0 1189 78 11 6 chr11 17446626 17446805 -131336667 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 4065 214 78 59 chr11 17446860 17446888 -131336584 - L1MCc LINE L1 -4501 2440 2414 1621 152 14 25 chr11 17446888 17447165 -131336307 - AluJb SINE Alu -38 274 1 4065 214 78 59 chr11 17447165 17447520 -131335952 - L1MCc LINE L1 -4527 2414 2067 1838 176 0 19 chr11 17447520 17447838 -131335634 - AluJb SINE Alu 0 312 1 4065 214 78 59 chr11 17447838 17448133 -131335339 - L1MCc LINE L1 -4874 2067 1779 1802 158 3 17 chr11 17448133 17448430 -131335042 - AluSx SINE Alu -14 298 6 4065 214 78 59 chr11 17448430 17448490 -131334982 - L1MCc LINE L1 -5162 1779 1722 2327 101 3 0 chr11 17448490 17448787 -131334685 - AluSp SINE Alu -15 298 1 4065 214 78 59 chr11 17448787 17450010 -131333462 - L1MCc LINE L1 -5219 1722 58 1166 248 89 64 chr11 17450017 17450489 -131332983 - MLT1J LTR MaLR -27 484 1 2422 84 3 0 chr11 17451763 17452059 -131331413 - AluSp SINE Alu -16 297 1 982 164 1 33 chr11 17452918 17453105 -131330367 + LTR25-int LTR ERV1 103 304 -6692 3495 109 87 17 chr11 17453783 17454315 -131329157 + MER61E LTR ERV1 1 569 0 26907 189 18 9 chr11 17454315 17460322 -131323150 + HUERS-P3 LTR ERV1 3 5912 -3007 14045 104 7 12 chr11 17460323 17461138 -131322334 + HUERS-P3 LTR ERV1 6938 7756 -1163 1858 143 0 35 chr11 17461138 17461452 -131322020 + AluSg SINE Alu 1 303 -7 14045 104 7 12 chr11 17461452 17462629 -131320843 + HUERS-P3 LTR ERV1 7756 8919 0 3946 121 12 23 chr11 17462629 17463200 -131320272 + MER61E LTR ERV1 1 565 -4 623 306 161 28 chr11 17463295 17463586 -131319886 + MLT1H LTR MaLR 10 339 -210 27 73 0 0 chr11 17463667 17463722 -131319750 + AT_rich Low_complexity Low_complexity 1 55 0 693 299 65 67 chr11 17463805 17464078 -131319394 + LTR16B LTR ERVL 1 274 -190 3045 185 38 9 chr11 17464078 17464412 -131319060 + MER6A DNA MER2_type 5 365 -500 1804 160 0 28 chr11 17464412 17464731 -131318741 - AluJo SINE Alu -2 310 1 3045 185 38 9 chr11 17464731 17464980 -131318492 + MER6A DNA MER2_type 365 605 0 693 299 65 67 chr11 17464980 17465171 -131318301 + LTR16B LTR ERVL 274 464 0 431 266 34 41 chr11 17467079 17467183 -131316289 + MIR SINE MIR 3 107 -130 2013 160 86 3 chr11 17467183 17467520 -131315952 + MLT1A1 LTR MaLR 1 365 0 431 266 34 41 chr11 17467520 17467583 -131315889 + MIR SINE MIR 107 169 -68 290 328 123 56 chr11 17468489 17469086 -131314386 - L2 LINE L2 0 3272 2617 1092 176 94 0 chr11 17469241 17469474 -131313998 - MIR SINE MIR -1 261 7 2444 65 0 0 chr11 17472241 17472547 -131310925 + AluSg SINE Alu 1 306 -4 347 211 21 49 chr11 17473037 17473179 -131310293 + C-rich Low_complexity Low_complexity 6 143 0 199 100 0 40 chr11 17473351 17473401 -131310071 + (TCCCC)n Simple_repeat Simple_repeat 2 49 0 270 0 0 0 chr11 17473781 17473811 -131309661 + (A)n Simple_repeat Simple_repeat 1 30 0 265 326 82 37 chr11 17474421 17474666 -131308806 + L3 LINE CR1 1134 1389 -188 193 321 76 15 chr11 17475107 17475238 -131308234 + L2 LINE L2 2717 2855 -459 821 251 71 10 chr11 17475824 17476213 -131307259 + MLT1K LTR MaLR 143 575 -13 1931 163 48 13 chr11 17476321 17476696 -131306776 + MLT1B LTR MaLR 1 388 -2 199 174 0 29 chr11 17477960 17478029 -131305443 + (TG)n Simple_repeat Simple_repeat 2 68 0 310 215 165 0 chr11 17478918 17478997 -131304475 + MIR3 SINE MIR 73 164 -44 218 226 35 43 chr11 17480316 17480431 -131303041 + (CAGAGA)n Simple_repeat Simple_repeat 6 119 0 759 321 165 11 chr11 17482586 17482928 -131300544 + L2 LINE L2 2353 2641 -672 2287 94 0 22 chr11 17482928 17483246 -131300226 + AluSx SINE Alu 1 311 -1 759 321 165 11 chr11 17483246 17483721 -131299751 + L2 LINE L2 2641 3313 0 193 224 20 0 chr11 17484476 17484525 -131298947 + MIR SINE MIR 113 162 -100 721 294 22 1 chr11 17484611 17484833 -131298639 + MIR SINE MIR 22 249 -13 241 345 54 34 chr11 17484826 17484974 -131298498 + L3 LINE CR1 743 893 -684 * 243 340 20 0 chr11 17485166 17485266 -131298206 + L3 LINE CR1 1181 1282 -295 543 323 105 33 chr11 17485812 17486088 -131297384 + L2 LINE L2 2977 3272 0 426 304 29 41 chr11 17486102 17486273 -131297199 + MIR SINE MIR 80 248 -14 495 282 87 15 chr11 17486720 17486915 -131296557 + MIR SINE MIR 17 225 -37 904 237 88 0 chr11 17487597 17487825 -131295647 + MER112 DNA MER1_type 13 260 0 345 292 17 8 chr11 17488124 17488244 -131295228 + L1ME LINE L1 5547 5667 -454 1929 142 10 10 chr11 17488697 17489006 -131294466 - AluSq SINE Alu -4 309 1 200 363 38 0 chr11 17490311 17490391 -131293081 + MIR SINE MIR 158 240 -22 365 281 79 0 chr11 17490426 17490540 -131292932 - MIR SINE MIR -56 206 84 205 290 29 0 chr11 17491138 17491207 -131292265 - MIR SINE MIR -113 149 79 2186 206 45 54 chr11 17491558 17492115 -131291357 + MLT1K LTR MaLR 32 583 -5 1986 121 3 13 chr11 17492892 17493198 -131290274 - AluJb SINE Alu -9 303 1 860 189 25 61 chr11 17493810 17494006 -131289466 - AluJo SINE Alu 0 312 124 379 221 26 0 chr11 17494708 17494785 -131288687 + MIR SINE MIR 74 152 -56 323 288 127 65 chr11 17494976 17495299 -131288173 + L2 LINE L2 2921 3263 -9 214 344 82 82 chr11 17495532 17495811 -131287661 + L2 LINE L2 2962 3240 -32 770 211 76 22 chr11 17495814 17495830 -131287642 + MER117 DNA MER1_type 2 16 -181 2437 56 3 0 chr11 17495830 17496133 -131287339 - AluY SINE Alu -7 304 1 770 211 76 22 chr11 17496133 17496301 -131287171 + MER117 DNA MER1_type 16 196 -1 713 322 51 4 chr11 17497875 17498111 -131285361 + MIR SINE MIR 8 254 -8 688 204 21 0 chr11 17500452 17500594 -131282878 - L1MB7 LINE L1 -82 6102 5958 551 197 87 8 chr11 17500595 17500722 -131282750 - MER106A DNA MER1_type -70 166 30 190 191 24 0 chr11 17501177 17501219 -131282253 - MIR SINE MIR -65 143 101 426 273 119 4 chr11 17501240 17501467 -131282005 - MER112 DNA MER1_type -7 253 1 670 241 116 37 chr11 17501640 17501689 -131281783 - MIR SINE MIR 0 262 218 180 0 0 0 chr11 17501689 17501709 -131281763 + (TC)n Simple_repeat Simple_repeat 1 20 0 1846 110 0 31 chr11 17501709 17501999 -131281473 - AluJo SINE Alu -31 281 1 670 241 116 37 chr11 17501999 17502189 -131281283 - MIR SINE MIR -43 219 3 351 241 186 22 chr11 17502878 17503044 -131280428 - MIR SINE MIR -40 222 32 398 282 30 23 chr11 17503770 17503901 -131279571 + MIR SINE MIR 53 184 -78 424 308 29 23 chr11 17504176 17504348 -131279124 - MIR SINE MIR -55 207 35 225 289 105 0 chr11 17505148 17505224 -131278248 - L2 LINE L2 -73 3199 3116 221 330 22 33 chr11 17505428 17505519 -131277953 - L2 LINE L2 -56 3216 3127 222 231 294 50 chr11 17505579 17505739 -131277733 - MIR SINE MIR -56 206 8 238 326 130 59 chr11 17506707 17506977 -131276495 + L2 LINE L2 2804 3092 -180 2225 99 3 3 chr11 17507018 17507321 -131276151 + AluSg SINE Alu 1 303 -7 183 320 93 0 chr11 17507332 17507407 -131276065 + L2 LINE L2 3187 3268 -4 661 247 107 0 chr11 17507821 17507999 -131275473 + MIR SINE MIR 47 243 -19 2100 63 18 14 chr11 17508001 17508286 -131275186 + L1PA8 LINE L1 5887 6172 0 541 306 31 0 chr11 17508784 17508944 -131274528 + MIR SINE MIR 95 259 -3 6208 41 0 0 chr11 17509631 17510359 -131273113 - L1PA7 LINE L1 -4 6150 5423 574 298 96 9 chr11 17510628 17510846 -131272626 + MIR SINE MIR 25 261 -1 251 261 90 15 chr11 17512819 17512953 -131270519 + (TTAGGG)n Simple_repeat Simple_repeat 3 146 0 319 360 9 0 chr11 17512962 17513073 -131270399 - MIR SINE MIR -3 259 148 394 301 97 23 chr11 17514309 17514485 -131268987 + L3 LINE CR1 1180 1368 -209 633 266 131 8 chr11 17515629 17515881 -131267591 + L1ME4a LINE L1 5834 6116 -5 373 173 67 0 chr11 17516836 17516911 -131266561 + MIR SINE MIR 56 135 -127 185 340 0 0 chr11 17517621 17517668 -131265804 - L2 LINE L2 -87 3185 3139 378 282 40 8 chr11 17518250 17518374 -131265098 + L1ME LINE L1 5538 5665 -456 24 32 0 0 chr11 17518614 17518645 -131264827 + AT_rich Low_complexity Low_complexity 1 31 0 327 85 0 0 chr11 17518913 17518960 -131264512 + (TG)n Simple_repeat Simple_repeat 2 48 0 2645 64 0 6 chr11 17520748 17521060 -131262412 + AluSq SINE Alu 1 310 -3 2158 124 3 10 chr11 17521758 17522064 -131261408 + AluSx SINE Alu 1 304 -8 232 169 200 31 chr11 17522172 17522237 -131261235 + L2 LINE L2 3197 3272 0 195 293 136 50 chr11 17522302 17522442 -131261030 + L2 LINE L2 3100 3251 -21 246 296 23 11 chr11 17522787 17522875 -131260597 + MIR SINE MIR 102 190 -72 185 325 48 63 chr11 17522958 17523084 -131260388 + L2 LINE L2 3180 3303 -10 348 236 55 27 chr11 17525211 17525321 -131258151 + MIR SINE MIR 31 143 -65 254 273 36 36 chr11 17525335 17525445 -131258027 - L1MEd LINE L1 -5068 1051 942 953 219 83 22 chr11 17525462 17525690 -131257782 - ERVL LTR ERVL -3488 2276 2035 2371 105 0 0 chr11 17525741 17526037 -131257435 + AluSg SINE Alu 1 296 -14 519 307 27 0 chr11 17526331 17526481 -131256991 + L2 LINE L2 3160 3313 0 302 259 35 24 chr11 17526958 17527043 -131256429 - MIR SINE MIR -62 146 61 660 248 50 74 chr11 17528663 17528921 -131254551 + MIR SINE MIR 3 254 -8 215 254 0 0 chr11 17529009 17529064 -131254408 + MIR SINE MIR 68 122 -86 822 128 149 32 chr11 17529237 17529425 -131254047 + L1MB7 LINE L1 5964 6173 -11 2302 122 0 0 chr11 17529904 17530207 -131253265 - AluSx SINE Alu -9 303 1 753 161 0 0 chr11 17530401 17530519 -131252953 - FLAM_A SINE Alu -15 118 1 353 273 71 10 chr11 17530956 17531055 -131252417 - MIR SINE MIR -57 205 101 1112 168 21 133 chr11 17531366 17531705 -131251767 - AluJo SINE Alu 0 302 2 300 254 217 25 chr11 17531778 17532018 -131251454 - L1ME4a LINE L1 -23 6098 5813 753 182 0 0 chr11 17532058 17532190 -131251282 - FLAM_C SINE Alu 0 133 2 22 0 0 0 chr11 17532846 17532868 -131250604 + AT_rich Low_complexity Low_complexity 1 22 0 2095 135 7 3 chr11 17532870 17533167 -131250305 - AluSx SINE Alu -14 298 1 1017 72 22 28 chr11 17534175 17534355 -131249117 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 2257 60 0 11 chr11 17534358 17534627 -131248845 - AluY SINE Alu -34 277 12 2369 108 0 0 chr11 17534627 17534924 -131248548 - AluSg SINE Alu -9 301 5 211 264 22 44 chr11 17535115 17535206 -131248266 + L3 LINE CR1 1382 1470 -107 392 175 0 0 chr11 17535376 17535439 -131248033 + MER91B DNA MER1_type 1 63 -127 847 291 124 23 chr11 17535646 17536089 -131247383 + MLT1J LTR MaLR 15 502 -9 2207 108 13 0 chr11 17536295 17536600 -131246872 - MER1B DNA MER1_type 0 339 31 350 227 0 0 chr11 17536718 17536784 -131246688 + MER117 DNA MER1_type 79 144 -53 474 239 18 0 chr11 17538602 17538715 -131244757 - MIR SINE MIR -78 184 70 2195 134 3 3 chr11 17539597 17539904 -131243568 + AluSx SINE Alu 1 307 -5 249 311 57 9 chr11 17540250 17540356 -131243116 - MIR SINE MIR -69 139 29 576 259 175 26 chr11 17540577 17540805 -131242667 + MIR SINE MIR 1 262 0 358 289 207 8 chr11 17540802 17541048 -131242424 - L2 LINE L2 0 3272 2978 * 180 111 0 0 chr11 17541203 17541230 -131242242 + (CA)n Simple_repeat Simple_repeat 2 28 0 195 309 134 0 chr11 17541797 17541894 -131241578 + L3b LINE CR1 1339 1448 -135 295 320 20 0 chr11 17542714 17542814 -131240658 + L2 LINE L2 2982 3083 -189 606 228 24 24 chr11 17542948 17543115 -131240357 + MIR SINE MIR 2 168 -94 223 314 67 0 chr11 17543158 17543263 -131240209 + MIR SINE MIR 151 262 0 260 234 31 0 chr11 17543295 17543359 -131240113 + L2 LINE L2 3203 3268 -4 294 225 234 0 chr11 17544761 17544872 -131238600 - MIR3 SINE MIR -2 206 70 327 263 94 32 chr11 17544985 17545144 -131238328 + MIR SINE MIR 20 186 -57 364 202 29 58 chr11 17545242 17545346 -131238126 + MIR3 SINE MIR 100 200 -8 245 349 16 8 chr11 17545340 17545469 -131238003 + MIR3 SINE MIR 50 179 -29 * 383 253 142 31 chr11 17546107 17546275 -131237197 + MIR SINE MIR 30 212 -50 1055 269 84 17 chr11 17546354 17546770 -131236702 + L1ME4a LINE L1 5491 5934 -187 680 285 54 29 chr11 17547829 17548071 -131235401 - MIR SINE MIR -13 249 2 540 285 30 12 chr11 17548077 17548242 -131235230 - MIR3 SINE MIR -11 197 30 672 302 87 12 chr11 17548315 17548557 -131234915 + MIR SINE MIR 2 261 -1 403 314 16 16 chr11 17549267 17549446 -131234026 - MIR SINE MIR -44 218 41 327 325 17 54 chr11 17549587 17549827 -131233645 + L2 LINE L2 2458 2688 -626 2689 142 31 32 chr11 17549829 17550060 -131233412 + L1MB3 LINE L1 5664 5894 -289 2358 106 0 0 chr11 17550060 17550361 -131233111 + AluSg SINE Alu 1 301 -9 2689 142 31 32 chr11 17550361 17550559 -131232913 + L1MB3 LINE L1 5894 6093 -90 1783 124 0 141 chr11 17550559 17550907 -131232565 - AluJb SINE Alu -13 299 1 2689 142 31 32 chr11 17550907 17550980 -131232492 + L1MB3 LINE L1 6093 6165 -18 396 0 0 0 chr11 17550984 17551028 -131232444 + (CA)n Simple_repeat Simple_repeat 1 44 0 1635 152 12 8 chr11 17551082 17551338 -131232134 + AluSx SINE Alu 5 261 -51 370 303 92 5 chr11 17551366 17551551 -131231921 + L2 LINE L2 2856 3056 -257 789 240 42 18 chr11 17552448 17552665 -131230807 + MIR SINE MIR 41 262 0 334 293 57 21 chr11 17552669 17552809 -131230663 + MIR SINE MIR 104 248 -14 215 263 158 32 chr11 17552890 17552985 -131230487 + L2 LINE L2 2101 2207 -1107 408 125 0 0 chr11 17552988 17553052 -131230420 + (TTCC)n Simple_repeat Simple_repeat 2 65 0 2001 131 0 3 chr11 17553053 17553335 -131230137 - AluSx SINE Alu -31 281 1 304 313 121 4 chr11 17553335 17553591 -131229881 + L2 LINE L2 2192 2477 -837 831 269 182 12 chr11 17553596 17554008 -131229464 + L2 LINE L2 2832 3313 0 730 220 60 6 chr11 17554529 17554697 -131228775 - MIR SINE MIR -1 261 85 273 313 65 65 chr11 17555115 17555332 -131228140 - L2 LINE L2 -93 3179 2963 445 291 265 9 chr11 17555471 17555811 -131227661 + MLT1L LTR MaLR 120 546 -69 366 267 9 9 chr11 17555933 17556049 -131227423 - Charlie2a DNA MER1_type -4 2858 2743 * 964 214 71 7 chr11 17556035 17556316 -131227156 - Charlie2a DNA MER1_type -1837 1025 727 252 286 33 0 chr11 17556325 17556416 -131227056 - Charlie2a DNA MER1_type -2453 409 316 418 254 9 0 chr11 17556909 17557019 -131226453 - Charlie2 DNA MER1_type 0 2862 2752 276 228 41 73 chr11 17557029 17557152 -131226320 - MIR3 SINE MIR -85 123 5 1891 155 3 24 chr11 17559170 17559466 -131224006 - AluJo SINE Alu -22 290 1 263 265 43 8 chr11 17560774 17560891 -131222581 + (CCCCG)n Simple_repeat Simple_repeat 2 122 0 205 239 21 141 chr11 17561401 17561543 -131221929 - MIR3 SINE MIR -54 154 30 328 288 0 0 chr11 17562469 17562542 -131220930 - MIR SINE MIR -58 150 78 422 294 56 8 chr11 17562705 17562831 -131220641 + MIR SINE MIR 50 181 -81 250 251 49 50 chr11 17563046 17563138 -131220334 + MIR SINE MIR 21 114 -94 646 91 0 0 chr11 17563759 17563880 -131219592 + AluJb SINE Alu 194 314 0 677 170 0 71 chr11 17564501 17564642 -131218830 - FLAM_C SINE Alu -1 132 2 196 283 0 0 chr11 17565394 17565440 -131218032 - L2 LINE L2 -5 3308 3263 * 460 282 155 17 chr11 17565427 17565608 -131217864 - MIR SINE MIR -44 218 13 422 229 115 83 chr11 17566246 17566403 -131217069 + MIR SINE MIR 22 183 -79 23 33 0 0 chr11 17566492 17566522 -131216950 + AT_rich Low_complexity Low_complexity 1 30 0 308 328 129 5 chr11 17566522 17566708 -131216764 - MIR SINE MIR -13 249 41 5852 94 24 14 chr11 17566867 17567024 -131216448 - L1MA3 LINE L1 -2 6303 6149 2185 111 3 7 chr11 17567024 17567321 -131216151 - AluSx SINE Alu -16 296 1 5852 94 24 14 chr11 17567321 17568055 -131215417 - L1MA3 LINE L1 -156 6149 5403 1967 182 43 3 chr11 17568126 17568477 -131214995 + MLT1A1 LTR MaLR 1 365 0 204 228 18 0 chr11 17568623 17568680 -131214792 + GA-rich Low_complexity Low_complexity 1 58 0 403 293 93 14 chr11 17569171 17569311 -131214161 - MIR SINE MIR -89 173 23 800 164 99 18 chr11 17569313 17569484 -131213988 + MER5A DNA MER1_type 4 188 -1 219 163 0 70 chr11 17569894 17569937 -131213535 - L2 LINE L2 -2 3270 3231 215 285 36 79 chr11 17569986 17570151 -131213321 + L2 LINE L2 2943 3100 -172 2342 165 127 95 chr11 17570492 17570700 -131212772 - LTR68 LTR ERV1 0 740 540 1623 124 16 4 chr11 17570700 17570958 -131212514 + L1MB3 LINE L1 5916 6176 -7 2342 165 127 95 chr11 17570958 17571097 -131212375 - LTR68 LTR ERV1 -200 540 407 5861 68 12 17 chr11 17571097 17571730 -131211742 - L1MA2 LINE L1 0 6304 5674 2268 103 0 17 chr11 17571730 17572031 -131211441 - AluSc SINE Alu -9 300 5 5861 68 12 17 chr11 17572031 17572215 -131211257 - L1MA2 LINE L1 -630 5674 5491 2342 165 127 95 chr11 17572215 17572583 -131210889 - LTR68 LTR ERV1 -333 407 1 454 237 92 8 chr11 17572852 17572983 -131210489 - MIR SINE MIR -35 227 86 290 321 77 17 chr11 17573331 17573484 -131209988 - L1P2 LINE L1 -343 5811 5641 2718 173 32 10 chr11 17573484 17573976 -131209496 - MLT1D LTR MaLR -2 503 1 290 321 77 17 chr11 17573976 17574028 -131209444 - L1P2 LINE L1 -513 5641 5594 739 209 12 0 chr11 17575031 17575194 -131208278 - L1M4 LINE L1 -3118 3028 2864 195 246 138 85 chr11 17577955 17578085 -131205387 + MIR3 SINE MIR 15 151 -57 287 271 21 90 chr11 17578251 17578439 -131205033 + L2 LINE L2 2948 3122 -191 538 188 23 8 chr11 17578531 17578659 -131204813 + MER69 DNA AcHobo 2382 2511 -15 372 182 300 9 chr11 17578678 17578788 -131204684 + L2 LINE L2 3158 3299 -14 193 350 17 0 chr11 17580168 17580228 -131203244 + MIR SINE MIR 89 149 -113 305 331 0 0 chr11 17580300 17580436 -131203036 + (TG)n Simple_repeat Simple_repeat 2 137 0 332 284 40 0 chr11 17581666 17581775 -131201697 + MIR SINE MIR 45 167 -63 270 294 0 24 chr11 17581770 17581855 -131201617 - L2 LINE L2 -5 3308 3226 * 749 262 136 5 chr11 17582922 17583143 -131200329 + MIR SINE MIR 8 257 -5 273 197 0 0 chr11 17583146 17583212 -131200260 + (CAT)n Simple_repeat Simple_repeat 3 68 0 802 174 5 18 chr11 17583219 17583446 -131200026 + (CACCAT)n Simple_repeat Simple_repeat 1 223 0 271 245 0 29 chr11 17583431 17583570 -131199902 + (CAT)n Simple_repeat Simple_repeat 1 135 0 * 196 268 141 0 chr11 17583573 17583644 -131199828 - MIR SINE MIR -73 189 109 663 120 0 0 chr11 17584174 17584274 -131199198 - AluSg1 SINE Alu -1 309 210 1152 123 0 12 chr11 17584277 17584440 -131199032 - AluSg1 SINE Alu -148 161 1 355 308 145 36 chr11 17585436 17585657 -131197815 + L1MC4a LINE L1 7114 7358 -450 233 304 32 8 chr11 17585689 17585814 -131197658 + L1MC5 LINE L1 7311 7438 -523 295 246 136 53 chr11 17585965 17586229 -131197243 + L1ME4a LINE L1 5833 6118 -3 549 285 74 22 chr11 17586254 17586481 -131196991 - MIR SINE MIR -1 261 24 360 273 38 42 chr11 17588635 17588815 -131194657 - MIR SINE MIR -63 145 3 1121 232 0 5 chr11 17589743 17589967 -131193505 + MER58A DNA MER1_type 1 223 -1 694 216 116 30 chr11 17589977 17590046 -131193426 + MER112 DNA MER1_type 1 63 -197 404 302 113 0 chr11 17590046 17590205 -131193267 + MER5B DNA MER1_type 1 177 -1 694 216 116 30 chr11 17590205 17590367 -131193105 + MER112 DNA MER1_type 63 252 -8 43 35 0 0 chr11 17590838 17590895 -131192577 + AT_rich Low_complexity Low_complexity 1 57 0 348 278 31 10 chr11 17591619 17591716 -131191756 - MIR SINE MIR -69 193 95 418 224 37 0 chr11 17591721 17591828 -131191644 + L1MC4 LINE L1 7804 7914 -128 321 178 178 85 chr11 17591890 17592008 -131191464 + L1MC4 LINE L1 7914 8042 0 656 265 38 0 chr11 17592033 17592218 -131191254 + MLT1J1 LTR MaLR 6 197 -249 274 193 9 0 chr11 17592227 17592291 -131191181 + MLT1J2 LTR MaLR 267 313 -137 231 224 0 35 chr11 17592290 17592348 -131191124 + MLT1J1 LTR MaLR 339 394 -52 * 215 219 68 55 chr11 17592436 17592509 -131190963 + L2 LINE L2 2911 2984 -329 180 357 57 51 chr11 17592554 17592711 -131190761 + L2 LINE L2 3110 3267 -5 291 93 0 0 chr11 17592965 17593008 -131190464 + (ATGGTG)n Simple_repeat Simple_repeat 1 43 0 409 171 14 0 chr11 17593039 17593109 -131190363 + L2 LINE L2 3193 3263 -50 249 33 0 0 chr11 17593251 17593281 -131190191 + (TG)n Simple_repeat Simple_repeat 2 31 0 405 248 25 57 chr11 17593498 17593655 -131189817 + MIR SINE MIR 80 231 -31 519 95 0 0 chr11 17594155 17594229 -131189243 + (TCCA)n Simple_repeat Simple_repeat 3 76 0 301 241 0 0 chr11 17594229 17594283 -131189189 - L2 LINE L2 -8 3264 3211 492 297 66 76 chr11 17594417 17594720 -131188752 + L2 LINE L2 2965 3264 -8 12266 144 33 11 chr11 17594915 17596780 -131186692 + L1MA2 LINE L1 2870 4692 -1612 2303 126 0 0 chr11 17596780 17597089 -131186383 + AluSx SINE Alu 1 309 -3 12266 144 33 11 chr11 17597089 17597664 -131185808 + L1MA2 LINE L1 4692 5253 -1051 9718 154 3 10 chr11 17597664 17600117 -131183355 + L1PA13 LINE L1 3715 6163 0 12266 144 33 11 chr11 17600117 17601024 -131182448 + L1MA2 LINE L1 5253 6304 0 249 320 39 19 chr11 17601117 17601220 -131182252 + MIR3 SINE MIR 82 186 -22 3448 238 71 47 chr11 17601319 17601636 -131181836 + L1ME1 LINE L1 35 343 -6053 183 42 0 0 chr11 17601636 17601660 -131181812 + (GA)n Simple_repeat Simple_repeat 2 25 0 3448 238 71 47 chr11 17601660 17602546 -131180926 + L1ME1 LINE L1 343 1266 -5130 4803 239 64 38 chr11 17602557 17602706 -131180766 + L1ME1 LINE L1 1410 1554 -4681 2922 141 6 4 chr11 17602706 17603182 -131180290 + L1MB5 LINE L1 5698 6174 0 4803 239 64 38 chr11 17603182 17603961 -131179511 + L1ME1 LINE L1 1554 2311 -3924 1736 168 10 30 chr11 17603961 17604259 -131179213 - AluJb SINE Alu -7 305 14 4803 239 64 38 chr11 17604259 17605055 -131178417 + L1ME1 LINE L1 2311 3085 -3150 2296 87 37 0 chr11 17605055 17605353 -131178119 + AluY SINE Alu 1 309 -2 4803 239 64 38 chr11 17605353 17606899 -131176573 + L1ME1 LINE L1 3085 4590 -1645 1900 175 10 0 chr11 17606899 17607202 -131176270 + AluJo SINE Alu 1 306 -6 4803 239 64 38 chr11 17607202 17607318 -131176154 + L1ME1 LINE L1 4590 4702 -1533 2291 83 17 0 chr11 17607318 17607607 -131175865 - AluSp SINE Alu -19 294 1 4803 239 64 38 chr11 17607607 17608814 -131174658 + L1ME1 LINE L1 4702 6227 -8 796 179 125 22 chr11 17609136 17609320 -131174152 + MER69 DNA AcHobo 1 203 -1023 321 14 0 0 chr11 17609856 17609928 -131173544 + (GGAA)n Simple_repeat Simple_repeat 1 72 0 301 289 16 25 chr11 17609948 17610069 -131173403 + L1M4 LINE L1 3073 3192 -2954 228 35 0 0 chr11 17611412 17611441 -131172031 + (CA)n Simple_repeat Simple_repeat 2 30 0 236 318 0 9 chr11 17611494 17611601 -131171871 + (CA)n Simple_repeat Simple_repeat 1 106 0 298 284 165 9 chr11 17613782 17613891 -131169581 + MIR3 SINE MIR 37 162 -46 464 300 8 8 chr11 17615644 17615774 -131167698 - MIR SINE MIR -33 229 100 470 304 137 4 chr11 17616054 17616281 -131167191 - MIR SINE MIR -5 257 1 385 264 58 16 chr11 17617690 17617811 -131165661 - L2 LINE L2 -1 3312 3187 247 295 32 42 chr11 17618400 17618495 -131164977 - MIR SINE MIR -25 237 144 * 594 232 8 8 chr11 17618488 17618613 -131164859 - L2 LINE L2 -1 3312 3188 257 276 187 15 chr11 17618650 17618784 -131164688 - MIR SINE MIR -94 168 12 373 243 47 0 chr11 17618845 17618952 -131164520 + MIR3 SINE MIR 49 160 -48 1039 212 60 24 chr11 17619095 17619345 -131164127 + MIR SINE MIR 2 260 -2 220 300 88 41 chr11 17619443 17619613 -131163859 + L2 LINE L2 2928 3105 -167 229 325 0 0 chr11 17620164 17620241 -131163231 + L2 LINE L2 2726 2802 -512 376 314 202 0 chr11 17620256 17620479 -131162993 + L2 LINE L2 2985 3252 -20 275 191 0 17 chr11 17620479 17620600 -131162872 + GA-rich Low_complexity Low_complexity 1 118 0 325 310 41 60 chr11 17621754 17622022 -131161450 + L2 LINE L2 2837 3099 -173 604 229 145 6 chr11 17622121 17622300 -131161172 + MER63A DNA MER1_type 7 210 0 207 100 0 0 chr11 17622377 17622407 -131161065 + (TGGG)n Simple_repeat Simple_repeat 2 31 0 244 290 14 0 chr11 17623858 17623927 -131159545 + L3 LINE CR1 1273 1342 -235 368 354 32 6 chr11 17624529 17624687 -131158785 + MIR SINE MIR 8 169 -93 1786 191 53 20 chr11 17624693 17625091 -131158381 - MER96B DNA MER1_type? 0 417 7 206 279 131 0 chr11 17625094 17625155 -131158317 + MIR SINE MIR 183 251 -11 509 266 107 17 chr11 17625266 17625443 -131158029 - MIR SINE MIR -39 223 31 24 0 0 0 chr11 17625570 17625594 -131157878 + AT_rich Low_complexity Low_complexity 1 24 0 378 327 47 13 chr11 17625775 17625945 -131157527 - MIR SINE MIR -50 212 39 * 674 264 110 18 chr11 17625941 17626168 -131157304 + MIR SINE MIR 7 254 -8 257 342 79 26 chr11 17626666 17626856 -131156616 + L3b LINE CR1 1194 1393 -190 2758 199 30 34 chr11 17627277 17627870 -131155602 + MLT1E LTR MaLR 3 593 0 662 320 10 0 chr11 17628218 17628412 -131155060 - MER117 DNA MER1_type 0 197 2 328 255 43 11 chr11 17628435 17628529 -131154943 - MIR SINE MIR -92 116 20 200 316 13 0 chr11 17628675 17628751 -131154721 + L2 LINE L2 3005 3081 -191 184 345 35 0 chr11 17630239 17630297 -131153175 + L2 LINE L2 3213 3272 0 244 316 173 12 chr11 17630323 17630729 -131152743 + L1ME2 LINE L1 5494 5972 -149 203 220 0 20 chr11 17630951 17631001 -131152471 + (TTA)n Simple_repeat Simple_repeat 3 51 0 641 282 37 33 chr11 17631163 17631404 -131152068 + MIR SINE MIR 18 259 -3 222 310 138 26 chr11 17631966 17632082 -131151390 - MIR SINE MIR -121 141 13 7253 269 79 17 chr11 17632099 17634680 -131148792 - L2 LINE L2 -3 3310 564 207 355 6 22 chr11 17636026 17636209 -131147263 + (CATA)n Simple_repeat Simple_repeat 1 180 0 * 275 304 5 38 chr11 17636085 17636269 -131147203 + (CATATA)n Simple_repeat Simple_repeat 2 179 0 215 346 0 22 chr11 17636322 17636458 -131147014 + (CATATA)n Simple_repeat Simple_repeat 3 135 0 6205 230 78 41 chr11 17637678 17638430 -131145042 + L1ME3A LINE L1 3076 3799 -2371 1816 173 0 0 chr11 17638430 17638725 -131144747 + AluSx SINE Alu 1 295 -17 6205 230 78 41 chr11 17638725 17639832 -131143640 + L1ME3A LINE L1 3799 4864 -1306 1588 174 44 7 chr11 17639832 17640126 -131143346 + AluJo SINE Alu 1 305 -7 6205 230 78 41 chr11 17640126 17641185 -131142287 + L1ME3A LINE L1 4864 6143 -27 929 243 70 21 chr11 17641196 17641480 -131141992 + L1ME2 LINE L1 5766 6063 -101 551 273 9 10 chr11 17641475 17641655 -131141817 + L1ME2 LINE L1 5997 6170 0 * 561 318 80 52 chr11 17641849 17642387 -131141085 - HAL1 LINE L1 -1954 553 1 322 299 157 0 chr11 17642387 17642521 -131140951 + MIR SINE MIR 102 256 -6 351 232 232 0 chr11 17642905 17643004 -131140468 - MIR SINE MIR -119 143 22 186 343 14 14 chr11 17643363 17643436 -131140036 - MIR SINE MIR -120 88 16 342 217 144 72 chr11 17643747 17643927 -131139545 + MIR SINE MIR 28 220 -42 257 327 10 29 chr11 17644406 17644510 -131138962 - MIR SINE MIR -33 229 128 265 305 85 17 chr11 17645107 17645225 -131138247 - MIR SINE MIR -22 240 115 493 260 24 0 chr11 17645647 17645770 -131137702 - MIR SINE MIR -132 130 5 206 346 0 25 chr11 17647159 17647240 -131136232 - MIR SINE MIR -35 227 149 198 255 0 20 chr11 17647608 17647659 -131135813 - MIR SINE MIR -64 144 95 720 303 75 10 chr11 17647773 17648067 -131135405 + L2 LINE L2 2995 3307 -6 458 218 55 9 chr11 17648604 17648714 -131134758 - MIR SINE MIR -120 142 28 455 273 52 32 chr11 17649118 17649132 -131134340 - MIR3 SINE MIR -42 166 154 794 268 0 6 chr11 17649132 17649311 -131134161 - MER5B DNA MER1_type 0 178 1 455 273 52 32 chr11 17649311 17649450 -131134022 - MIR3 SINE MIR -54 154 10 404 224 12 0 chr11 17649438 17649523 -131133949 - L2 LINE L2 -1 3271 3186 * 330 280 181 11 chr11 17649646 17649928 -131133544 - L2 LINE L2 -720 2594 2265 757 253 92 28 chr11 17650389 17650829 -131132643 - L2 LINE L2 -106 3207 2748 237 327 26 0 chr11 17651265 17651378 -131132094 + (CA)n Simple_repeat Simple_repeat 1 116 0 213 94 0 0 chr11 17651476 17651508 -131131964 + (CA)n Simple_repeat Simple_repeat 1 32 0 389 337 118 0 chr11 17652529 17652698 -131130774 + MER5A DNA MER1_type 1 189 0 237 33 0 0 chr11 17653155 17653185 -131130287 + (CCTG)n Simple_repeat Simple_repeat 3 32 0 404 273 83 49 chr11 17654624 17654829 -131128643 - L2 LINE L2 -2 3311 3100 410 279 12 67 chr11 17654942 17655049 -131128423 - MIR SINE MIR -3 259 162 2275 64 0 0 chr11 17655049 17655362 -131128110 + AluY SINE Alu 1 313 0 410 279 12 67 chr11 17655362 17655418 -131128054 - MIR SINE MIR -100 162 104 329 387 35 25 chr11 17655409 17655608 -131127864 - L2 LINE L2 -237 3035 2835 * 829 154 8 0 chr11 17655612 17655742 -131127730 + FLAM_C SINE Alu 1 131 -2 319 356 37 0 chr11 17656068 17656203 -131127269 + MIR SINE MIR 21 160 -102 2624 162 40 4 chr11 17656281 17656811 -131126661 + L1MC3 LINE L1 6097 6645 -1140 1919 131 9 25 chr11 17656811 17657131 -131126341 - MER2 DNA MER2_type 0 345 31 3241 142 150 141 chr11 17657180 17657641 -131125831 + L1MC3 LINE L1 6644 7099 -686 285 300 82 9 chr11 17657641 17657751 -131125721 + MLT1F1 LTR MaLR 8 125 -442 3241 142 150 141 chr11 17657751 17658312 -131125160 + L1MC3 LINE L1 7099 7785 0 329 340 58 15 chr11 17658383 17658589 -131124883 + MIR SINE MIR 47 261 -1 266 308 35 123 chr11 17658786 17659104 -131124368 + L2 LINE L2 2957 3246 -26 205 289 41 10 chr11 17659113 17659210 -131124262 + L3 LINE CR1 1326 1425 -152 1508 176 7 55 chr11 17659260 17659567 -131123905 + AluJb SINE Alu 1 292 -20 206 211 0 0 chr11 17660150 17660188 -131123284 + L2 LINE L2 3016 3053 -219 278 360 96 22 chr11 17660260 17660438 -131123034 + L2 LINE L2 3080 3270 -2 213 94 0 0 chr11 17660441 17660473 -131122999 + (GGAA)n Simple_repeat Simple_repeat 3 34 0 801 41 0 0 chr11 17660993 17661090 -131122382 - AluY SINE Alu -5 306 210 282 56 0 0 chr11 17661173 17661209 -131122263 + (TA)n Simple_repeat Simple_repeat 2 37 0 979 142 11 0 chr11 17663326 17663502 -131119970 + CT-rich Low_complexity Low_complexity 1 178 0 329 322 0 0 chr11 17664364 17664454 -131119018 + MIR SINE MIR 37 126 -82 457 288 50 0 chr11 17665342 17665481 -131117991 + MIR SINE MIR 76 221 -41 316 254 51 34 chr11 17665676 17665794 -131117678 - MIR SINE MIR -73 189 70 332 273 50 62 chr11 17667604 17667765 -131115707 - MIR3 SINE MIR -48 160 2 252 0 0 0 chr11 17668020 17668048 -131115424 + (CA)n Simple_repeat Simple_repeat 1 28 0 433 232 99 20 chr11 17668311 17668462 -131115010 + MER112 DNA MER1_type 77 239 -21 319 304 128 82 chr11 17668854 17669111 -131114361 - L2 LINE L2 -1 3271 3003 439 341 80 45 chr11 17669173 17669525 -131113947 + L2 LINE L2 2947 3310 -3 302 214 174 10 chr11 17672103 17672201 -131111271 - L2 LINE L2 -34 3279 3166 1807 192 35 19 chr11 17672770 17673233 -131110239 - Charlie4a DNA MER1_type 0 508 39 1742 168 7 3 chr11 17674239 17674537 -131108935 + AluJo SINE Alu 1 299 -13 315 0 0 0 chr11 17674799 17674834 -131108638 + (A)n Simple_repeat Simple_repeat 1 35 0 193 325 36 12 chr11 17676240 17676323 -131107149 - MIR3 SINE MIR -17 191 107 210 118 0 0 chr11 17676733 17676767 -131106705 + (TGG)n Simple_repeat Simple_repeat 1 34 0 285 29 0 0 chr11 17676811 17676845 -131106627 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 231 314 139 0 chr11 17676845 17676931 -131106541 - L2 LINE L2 -13 3259 3162 186 43 0 0 chr11 17677924 17677947 -131105525 + (TTTTG)n Simple_repeat Simple_repeat 4 26 0 2305 62 0 20 chr11 17678200 17678506 -131104966 + AluY SINE Alu 1 300 -11 626 247 27 48 chr11 17681076 17681262 -131102210 + MIR SINE MIR 80 261 -1 351 356 53 0 chr11 17681261 17681393 -131102079 + MIR SINE MIR 32 170 -92 * 1341 258 184 19 chr11 17681852 17682901 -131100571 - L2 LINE L2 0 3313 2063 618 252 0 7 chr11 17682970 17683113 -131100359 + L1MA10 LINE L1 6193 6334 0 2105 138 3 0 chr11 17683121 17683432 -131100040 + AluJo SINE Alu 1 312 0 239 120 0 20 chr11 17683432 17683482 -131099990 + (CAGAGA)n Simple_repeat Simple_repeat 6 54 0 221 250 0 16 chr11 17683493 17683557 -131099915 + GA-rich Low_complexity Low_complexity 3 65 0 384 141 26 127 chr11 17683703 17683881 -131099591 - MIR SINE MIR -5 257 104 204 300 0 50 chr11 17684044 17684144 -131099328 - L2 LINE L2 -185 3087 2993 832 263 189 7 chr11 17684190 17684623 -131098849 - LTR33 LTR ERVL -9 512 1 352 241 11 0 chr11 17684623 17684710 -131098762 - MIR SINE MIR -12 250 163 471 185 65 0 chr11 17685349 17685457 -131098015 + MIR SINE MIR 107 221 -41 184 337 62 45 chr11 17687144 17687322 -131096150 + L3b LINE CR1 1300 1480 -103 563 233 55 7 chr11 17687323 17687469 -131096003 + MIR SINE MIR 7 159 -103 543 291 223 18 chr11 17687626 17688140 -131095332 - L2 LINE L2 -4 3309 2672 2283 97 3 0 chr11 17688360 17688660 -131094812 - AluSx SINE Alu -11 301 1 411 317 41 7 chr11 17690133 17690278 -131093194 - L2 LINE L2 0 3272 3123 264 342 98 40 chr11 17690372 17690653 -131092819 - L2 LINE L2 0 3313 3050 1968 145 0 7 chr11 17690653 17690963 -131092509 + AluJb SINE Alu 1 308 -4 264 342 98 40 chr11 17690963 17691238 -131092234 - L2 LINE L2 -263 3050 2712 810 257 45 14 chr11 17692464 17692686 -131090786 + MIR SINE MIR 4 232 -30 264 231 0 51 chr11 17692829 17692907 -131090565 - MIR3 SINE MIR -126 82 9 500 243 40 46 chr11 17694233 17694385 -131089087 + MIR SINE MIR 47 197 -65 317 244 70 0 chr11 17694764 17694850 -131088622 + MIR SINE MIR 56 147 -61 836 219 113 21 chr11 17695067 17695305 -131088167 - MIR SINE MIR 0 262 3 301 286 151 24 chr11 17695598 17695724 -131087748 + MIR3 SINE MIR 15 156 -52 345 207 0 101 chr11 17696065 17696263 -131087209 + GA-rich Low_complexity Low_complexity 2 179 0 1820 171 0 0 chr11 17697176 17697469 -131086003 - AluJb SINE Alu -19 293 1 235 88 0 0 chr11 17697553 17697587 -131085885 - MIR SINE MIR -63 145 112 682 251 96 0 chr11 17697768 17697967 -131085505 + MIR SINE MIR 45 262 0 681 254 79 0 chr11 17698143 17698308 -131085164 + MER117 DNA MER1_type 4 181 -16 961 139 42 18 chr11 17698381 17698547 -131084925 + FRAM SINE Alu 1 169 -7 665 318 99 0 chr11 17699189 17699400 -131084072 - MIR SINE MIR -18 244 13 512 237 125 0 chr11 17699401 17699553 -131083919 + MIR SINE MIR 89 259 -3 601 278 98 10 chr11 17700888 17701093 -131082379 - MIR SINE MIR -2 260 38 1817 121 21 14 chr11 17701256 17701538 -131081934 + AluSx SINE Alu 1 284 -28 2123 104 3 7 chr11 17704351 17704650 -131078822 - AluSp SINE Alu -15 298 1 273 98 0 0 chr11 17708303 17708344 -131075128 + (CA)n Simple_repeat Simple_repeat 2 42 0 1958 142 0 0 chr11 17708883 17709178 -131074294 + AluSx SINE Alu 15 309 -3 195 286 71 41 chr11 17709324 17709422 -131074050 - L2 LINE L2 -84 3188 3088 207 100 0 0 chr11 17709541 17709571 -131073901 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 241 268 12 37 chr11 17709756 17709838 -131073634 - MARNA DNA Mariner -351 235 156 413 267 10 0 chr11 17710227 17710345 -131073127 + MIR SINE MIR 32 149 -62 209 125 0 62 chr11 17710902 17710950 -131072522 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 477 240 48 20 chr11 17710955 17711101 -131072371 - MIR SINE MIR -42 220 71 191 352 88 11 chr11 17712561 17712652 -131070820 - L3 LINE CR1 -3 1574 1477 498 288 15 8 chr11 17713178 17713310 -131070162 - MER94 DNA DNA -1 133 1 621 300 57 53 chr11 17715624 17715851 -131067621 + MIR SINE MIR 35 262 0 584 287 161 27 chr11 17716418 17716931 -131066541 - L2 LINE L2 0 3272 2692 408 329 121 33 chr11 17717801 17718041 -131065431 - MIR SINE MIR 0 262 2 706 265 39 0 chr11 17719544 17719725 -131063747 - MIR SINE MIR -73 189 2 503 284 55 11 chr11 17719803 17719986 -131063486 + MIR3 SINE MIR 16 206 -2 248 279 112 45 chr11 17722642 17722821 -131060651 - L2 LINE L2 -155 3117 2927 930 223 5 5 chr11 17722906 17723090 -131060382 - MIR SINE MIR -40 222 39 199 280 215 0 chr11 17723622 17723715 -131059757 + MIR SINE MIR 34 146 -62 403 281 39 13 chr11 17724229 17724382 -131059090 - MER103 DNA DNA -9 157 1 849 268 192 21 chr11 17724406 17724791 -131058681 - L2 LINE L2 -1 3312 2862 712 318 195 20 chr11 17725378 17725646 -131057826 + L3 LINE CR1 780 1000 -577 501 293 38 8 chr11 17725646 17725779 -131057693 - MER91C DNA MER1_type 0 140 4 712 318 195 20 chr11 17725779 17726017 -131057455 + L3 LINE CR1 1000 1375 -202 365 287 100 40 chr11 17726184 17726334 -131057138 - MER5A DNA MER1_type -21 168 10 320 296 6 45 chr11 17727163 17727403 -131056069 + CT-rich Low_complexity Low_complexity 1 230 0 829 250 55 51 chr11 17730926 17731182 -131052290 - MIR SINE MIR -1 261 5 211 250 80 45 chr11 17731984 17732072 -131051400 - MIR SINE MIR -55 153 63 754 273 88 9 chr11 17732601 17732828 -131050644 - MIR SINE MIR -16 246 2 337 332 107 5 chr11 17732900 17733105 -131050367 + L2 LINE L2 2804 3029 -243 238 261 243 0 chr11 17733174 17733285 -131050187 - MLT1K LTR MaLR -11 577 440 2027 153 65 5 chr11 17733301 17733687 -131049785 - MLT2D LTR ERVL 0 414 6 964 271 124 6 chr11 17733693 17734032 -131049440 - MLT1K LTR MaLR -177 411 33 613 321 28 36 chr11 17784567 17784816 -130998656 + MIR SINE MIR 2 248 -14 278 280 85 8 chr11 17785055 17785173 -130998299 + MIR3 SINE MIR 33 159 -49 354 232 69 62 chr11 17785670 17785815 -130997657 + MIR SINE MIR 23 171 -71 663 294 112 17 chr11 17785942 17786401 -130997071 - L2 LINE L2 -251 3062 2555 554 262 14 7 chr11 17786452 17786593 -130996879 - MIR SINE MIR 0 262 121 210 37 0 0 chr11 17787202 17787229 -130996243 + (CA)n Simple_repeat Simple_repeat 2 28 0 291 122 0 0 chr11 17788157 17788206 -130995266 + (CA)n Simple_repeat Simple_repeat 2 50 0 207 0 0 0 chr11 17788470 17788493 -130994979 + (CA)n Simple_repeat Simple_repeat 1 23 0 359 231 32 64 chr11 17788787 17788943 -130994529 + MIR3 SINE MIR 4 154 -54 236 286 14 0 chr11 17789668 17789738 -130993734 + MIR SINE MIR 30 100 -108 329 248 48 0 chr11 17790271 17790376 -130993096 - MIR3 SINE MIR -18 190 81 309 269 28 21 chr11 17790928 17791069 -130992403 + (CA)n Simple_repeat Simple_repeat 1 142 0 377 147 27 0 chr11 17792127 17792202 -130991270 + GA-rich Low_complexity Low_complexity 2 78 0 27 29 0 0 chr11 17792535 17792569 -130990903 + GC_rich Low_complexity Low_complexity 1 34 0 229 246 53 9 chr11 17792876 17792990 -130990482 + (CGGGG)n Simple_repeat Simple_repeat 5 123 0 215 132 26 0 chr11 17792985 17793023 -130990449 + (CCG)n Simple_repeat Simple_repeat 2 40 0 * 22 0 0 0 chr11 17793229 17793251 -130990221 + GC_rich Low_complexity Low_complexity 1 22 0 195 170 0 0 chr11 17793568 17793615 -130989857 + (CA)n Simple_repeat Simple_repeat 2 48 0 233 349 48 16 chr11 17794049 17794175 -130989297 - L2 LINE L2 -1 3271 3142 204 163 0 0 chr11 17794782 17794825 -130988647 + (GCCTG)n Simple_repeat Simple_repeat 3 45 0 411 73 0 0 chr11 17794939 17794994 -130988478 + (CA)n Simple_repeat Simple_repeat 2 56 0 364 310 41 60 chr11 17796257 17796525 -130986947 - L2 LINE L2 -173 3099 2837 275 191 0 17 chr11 17797679 17797800 -130985672 + CT-rich Low_complexity Low_complexity 1 118 0 404 314 202 0 chr11 17797800 17798023 -130985449 - L2 LINE L2 -20 3252 2985 250 323 21 10 chr11 17798038 17798134 -130985338 - L2 LINE L2 -512 2802 2706 243 312 77 29 chr11 17798666 17798836 -130984636 - L2 LINE L2 -167 3105 2928 1053 212 60 24 chr11 17798934 17799184 -130984288 - MIR SINE MIR -2 260 2 398 243 47 0 chr11 17799327 17799434 -130984038 - MIR3 SINE MIR -48 160 49 281 276 187 15 chr11 17799495 17799629 -130983843 + MIR SINE MIR 12 168 -94 * 595 297 34 6 chr11 17799616 17799791 -130983681 + L2 LINE L2 3133 3312 -1 260 350 25 33 chr11 17799784 17799904 -130983568 + MIR SINE MIR 144 262 0 * 395 264 58 16 chr11 17800468 17800589 -130982883 + L2 LINE L2 3187 3312 -1 516 313 137 4 chr11 17801998 17802225 -130981247 + MIR SINE MIR 1 257 -5 484 300 8 8 chr11 17802505 17802635 -130980837 + MIR SINE MIR 100 229 -33 314 284 165 9 chr11 17804388 17804497 -130978975 - MIR3 SINE MIR -46 162 37 236 318 0 9 chr11 17806678 17806785 -130976687 + (TG)n Simple_repeat Simple_repeat 1 106 0 228 35 0 0 chr11 17806838 17806867 -130976605 + (TG)n Simple_repeat Simple_repeat 2 30 0 344 290 70 19 chr11 17808169 17808331 -130975141 - L1M4 LINE L1 -1444 3192 880 321 14 0 0 chr11 17808351 17808423 -130975049 + (TTCC)n Simple_repeat Simple_repeat 1 72 0 744 179 125 22 chr11 17808959 17809143 -130974329 - MER69 DNA AcHobo -1023 203 1 3964 241 65 30 chr11 17809465 17810672 -130972800 - L1ME1 LINE L1 -8 6227 5064 2182 83 17 0 chr11 17810672 17810961 -130972511 + AluSp SINE Alu 1 294 -19 3964 241 65 30 chr11 17810961 17811077 -130972395 - L1ME1 LINE L1 -1171 5064 4954 1828 175 10 0 chr11 17811077 17811380 -130972092 - AluJo SINE Alu -6 306 1 3964 241 65 30 chr11 17811380 17812925 -130970547 - L1ME1 LINE L1 -1281 4954 3465 2296 87 37 0 chr11 17812925 17813223 -130970249 - AluY SINE Alu -2 309 1 3964 241 65 30 chr11 17813223 17814019 -130969453 - L1ME1 LINE L1 -2770 3465 2698 1736 168 10 30 chr11 17814019 17814317 -130969155 + AluJb SINE Alu 14 305 -7 3964 241 65 30 chr11 17814317 17815096 -130968376 - L1ME1 LINE L1 -3537 2698 1552 2922 141 6 4 chr11 17815096 17815572 -130967900 - L1MB5 LINE L1 0 6174 5698 3964 241 65 30 chr11 17815572 17815721 -130967751 - L1ME1 LINE L1 -4683 1552 1410 3448 238 71 47 chr11 17815732 17816618 -130966854 - L1ME1 LINE L1 -5130 1266 343 183 42 0 0 chr11 17816618 17816642 -130966830 + (TC)n Simple_repeat Simple_repeat 2 25 0 3448 238 71 47 chr11 17816642 17816959 -130966513 - L1ME1 LINE L1 -6053 343 35 249 320 39 19 chr11 17817058 17817161 -130966311 - MIR3 SINE MIR -22 186 82 12227 145 33 11 chr11 17817254 17818161 -130965311 - L1MA2 LINE L1 0 6304 5419 9718 154 5 7 chr11 17818161 17820614 -130962858 - L1PA13 LINE L1 0 6163 3715 12227 145 33 11 chr11 17820614 17821189 -130962283 - L1MA2 LINE L1 -885 5419 4858 2303 126 0 0 chr11 17821189 17821498 -130961974 - AluSx SINE Alu -3 309 1 12227 145 33 11 chr11 17821498 17823363 -130960109 - L1MA2 LINE L1 -1446 4858 2870 492 297 66 76 chr11 17823558 17823861 -130959611 - L2 LINE L2 -8 3264 2965 301 241 0 0 chr11 17823995 17824049 -130959423 + L2 LINE L2 3211 3264 -8 519 95 0 0 chr11 17824049 17824123 -130959349 + (TGGA)n Simple_repeat Simple_repeat 3 76 0 405 248 25 57 chr11 17824623 17824780 -130958692 - MIR SINE MIR -31 231 80 249 33 0 0 chr11 17824997 17825027 -130958445 + (CA)n Simple_repeat Simple_repeat 2 31 0 409 171 14 0 chr11 17825169 17825239 -130958233 - L2 LINE L2 -50 3263 3193 291 93 0 0 chr11 17825270 17825313 -130958159 + (CACCAT)n Simple_repeat Simple_repeat 1 43 0 180 357 57 51 chr11 17825567 17825724 -130957748 - L2 LINE L2 -5 3267 3110 215 219 68 55 chr11 17825769 17825842 -130957630 - L2 LINE L2 -329 2984 2911 231 224 0 35 chr11 17825930 17825988 -130957484 - MLT1J1 LTR MaLR -52 394 339 * 274 193 9 0 chr11 17825987 17826051 -130957421 - MLT1J2 LTR MaLR -137 367 267 656 265 38 0 chr11 17826060 17826245 -130957227 - MLT1J1 LTR MaLR -249 197 6 321 178 178 85 chr11 17826270 17826388 -130957084 - L1MC4 LINE L1 0 8042 7914 418 224 37 0 chr11 17826450 17826557 -130956915 - L1MC4 LINE L1 -128 7914 7804 348 278 31 10 chr11 17826562 17826659 -130956813 + MIR SINE MIR 95 193 -69 43 35 0 0 chr11 17827383 17827440 -130956032 + AT_rich Low_complexity Low_complexity 1 57 0 694 216 116 30 chr11 17827911 17828073 -130955399 - MER112 DNA MER1_type -8 252 63 404 302 113 0 chr11 17828073 17828232 -130955240 - MER5B DNA MER1_type -1 177 1 694 216 116 30 chr11 17828232 17828301 -130955171 - MER112 DNA MER1_type -197 63 1 1121 232 0 5 chr11 17828311 17828535 -130954937 - MER58A DNA MER1_type -1 223 1 360 273 38 42 chr11 17829463 17829643 -130953829 + MIR SINE MIR 3 181 -63 549 285 74 22 chr11 17831797 17832024 -130951448 + MIR SINE MIR 24 261 -1 295 246 136 53 chr11 17832049 17832313 -130951159 - L1ME4a LINE L1 -3 6118 5833 233 304 32 8 chr11 17832464 17832589 -130950883 - L1MC5 LINE L1 -523 7438 7311 355 308 145 36 chr11 17832621 17832842 -130950630 - L1MC4a LINE L1 -450 7358 7114 663 122 0 9 chr11 17833838 17834104 -130949368 + AluSg1 SINE Alu 1 311 -1 196 268 141 0 chr11 17834634 17834705 -130948767 + MIR SINE MIR 109 189 -73 271 245 0 29 chr11 17834708 17834847 -130948625 + (ATG)n Simple_repeat Simple_repeat 1 135 0 * 802 174 5 18 chr11 17834832 17835059 -130948413 + (ATGGTG)n Simple_repeat Simple_repeat 1 223 0 273 197 0 0 chr11 17835066 17835132 -130948340 + (ATG)n Simple_repeat Simple_repeat 3 68 0 749 262 136 5 chr11 17835135 17835356 -130948116 - MIR SINE MIR -5 257 8 270 294 0 24 chr11 17836423 17836508 -130946964 + L2 LINE L2 3226 3308 -5 * 332 284 40 0 chr11 17836503 17836612 -130946860 - MIR SINE MIR -63 145 45 305 331 0 0 chr11 17837842 17837978 -130945494 + (CA)n Simple_repeat Simple_repeat 2 137 0 193 350 17 0 chr11 17838050 17838110 -130945362 - MIR SINE MIR -113 149 89 372 182 300 9 chr11 17839490 17839600 -130943872 - L2 LINE L2 -14 3299 3158 538 188 23 8 chr11 17839619 17839747 -130943725 - MER69 DNA AcHobo -15 2511 2382 287 271 21 90 chr11 17839839 17840027 -130943445 - L2 LINE L2 -191 3122 2948 195 246 138 85 chr11 17840193 17840323 -130943149 - MIR3 SINE MIR -57 151 15 739 209 12 0 chr11 17843084 17843247 -130940225 + L1M4 LINE L1 2864 3028 -3118 312 309 169 25 chr11 17844258 17844302 -130939170 + L1MC4a LINE L1 5600 5636 -2172 2718 173 32 10 chr11 17844302 17844794 -130938678 + MLT1D LTR MaLR 1 503 -2 312 309 169 25 chr11 17844794 17844992 -130938480 + L1MC4a LINE L1 5636 5877 -1931 300 20 61 0 chr11 17845056 17845105 -130938367 + (CA)n Simple_repeat Simple_repeat 2 53 0 704 234 111 16 chr11 17846141 17846385 -130937087 - MLT1J2 LTR MaLR -139 311 45 211 281 150 31 chr11 17847093 17847253 -130936219 + L2 LINE L2 2873 3051 -221 404 279 83 28 chr11 17847364 17847500 -130935972 - MIR SINE MIR -46 162 22 206 237 35 35 chr11 17848542 17848656 -130934816 + (CGGGG)n Simple_repeat Simple_repeat 5 118 0 * 215 132 26 0 chr11 17848651 17848689 -130934783 + (CCG)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr11 17848895 17848917 -130934555 + GC_rich Low_complexity Low_complexity 1 22 0 396 0 0 0 chr11 17849234 17849278 -130934194 + (CA)n Simple_repeat Simple_repeat 2 45 0 225 349 48 16 chr11 17849710 17849836 -130933636 - L2 LINE L2 -1 3271 3142 183 186 0 0 chr11 17850443 17850486 -130932986 + (GCCTG)n Simple_repeat Simple_repeat 3 45 0 432 55 0 0 chr11 17850600 17850655 -130932817 + (CA)n Simple_repeat Simple_repeat 2 56 0 777 195 13 20 chr11 17851864 17852013 -130931459 + MIR SINE MIR 13 160 -102 1022 166 40 58 chr11 17852693 17852916 -130930556 - MER20 DNA MER1_type 0 219 1 269 277 72 0 chr11 17852924 17853007 -130930465 + MIR SINE MIR 45 133 -75 974 208 29 0 chr11 17853532 17853773 -130929699 - MER69 DNA AcHobo 0 2526 2279 4008 182 48 40 chr11 17854066 17854679 -130928793 + L1MB7 LINE L1 4656 5263 -921 2083 122 35 40 chr11 17854679 17855056 -130928416 - THE1C LTR MaLR 0 375 1 4008 182 48 40 chr11 17855056 17855598 -130927874 + L1MB7 LINE L1 5263 5834 -350 2393 91 7 0 chr11 17855598 17855896 -130927576 + AluSx SINE Alu 1 300 -12 4008 182 48 40 chr11 17855896 17856231 -130927241 + L1MB7 LINE L1 5834 6165 -19 283 338 117 14 chr11 17856394 17856539 -130926933 - MIR3 SINE MIR -1 207 48 2889 189 14 12 chr11 17856928 17857580 -130925892 - MER69 DNA AcHobo -263 2263 1611 786 236 162 11 chr11 17857581 17857852 -130925620 - MER69 DNA AcHobo -2214 312 1 251 254 17 0 chr11 17858177 17858236 -130925236 + MIR SINE MIR 8 67 -195 2189 106 0 4 chr11 17858298 17858573 -130924899 - AluSg SINE Alu -31 279 6 778 244 28 6 chr11 17859020 17859200 -130924272 + MER91A DNA MER1_type 12 195 -1 347 356 15 30 chr11 17859261 17859463 -130924009 + L2 LINE L2 3077 3275 -38 308 295 142 65 chr11 17859435 17860064 -130923408 + L2 LINE L2 2563 3232 -40 * 267 31 0 0 chr11 17860500 17860532 -130922940 + (TG)n Simple_repeat Simple_repeat 1 32 0 298 244 22 44 chr11 17860549 17860639 -130922833 + L2 LINE L2 2997 3084 -188 425 236 0 87 chr11 17861025 17861152 -130922320 + MER5B DNA MER1_type 4 119 -59 22 35 0 0 chr11 17862599 17862628 -130920844 + GC_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chr11 17863186 17863220 -130920252 + GC_rich Low_complexity Low_complexity 1 34 0 257 318 135 27 chr11 17864971 17865119 -130918353 + MIR SINE MIR 21 184 -78 1533 245 211 24 chr11 17865839 17866717 -130916755 - L2 LINE L2 -14 3299 2252 1006 350 99 8 chr11 17866729 17867459 -130916013 + L2 LINE L2 2513 3313 0 318 200 0 57 chr11 17867802 17867872 -130915600 + L2 LINE L2 3248 3313 0 807 253 65 80 chr11 17869649 17869985 -130913487 - L2 LINE L2 -36 3277 2947 255 256 26 13 chr11 17869991 17870069 -130913403 - L2 LINE L2 -21 3251 3173 2157 107 0 29 chr11 17870145 17870453 -130913019 - AluSx SINE Alu -13 299 1 268 296 25 37 chr11 17871250 17871331 -130912141 + L3b LINE CR1 1295 1374 -209 419 336 68 68 chr11 17873816 17874155 -130909317 - L2 LINE L2 -14 3258 2920 369 319 30 0 chr11 17874344 17874479 -130908993 + MIR3 SINE MIR 16 154 -54 472 306 97 9 chr11 17874914 17875130 -130908342 + MIR SINE MIR 28 262 0 292 221 17 30 chr11 17875569 17875687 -130907785 - MIR SINE MIR -79 129 34 591 271 52 18 chr11 17876146 17876375 -130907097 - L1MC5 LINE L1 -48 7913 7677 1229 209 77 75 chr11 17876377 17876749 -130906723 - L1MC5 LINE L1 -191 7770 7394 2263 51 0 11 chr11 17876749 17877050 -130906422 - AluY SINE Alu 0 311 14 1229 209 77 75 chr11 17877050 17877206 -130906266 - L1MC5 LINE L1 -567 7394 7240 1214 346 74 31 chr11 17877226 17878241 -130905231 + L2 LINE L2 1785 2842 -472 193 275 153 42 chr11 17878307 17878496 -130904976 + L2 LINE L2 2932 3141 -131 * 200 186 264 70 chr11 17878462 17878591 -130904881 + MIR SINE MIR 109 262 0 1256 243 53 49 chr11 17878714 17878792 -130904680 + MLT1J LTR MaLR 6 82 -429 1853 191 34 16 chr11 17878792 17879175 -130904297 - MLT1B LTR MaLR 0 390 1 1256 243 53 49 chr11 17879175 17879381 -130904091 + MLT1J LTR MaLR 82 295 -216 2316 182 108 17 chr11 17879381 17879842 -130903630 + MLT1D LTR MaLR 3 505 0 1256 243 53 49 chr11 17879842 17879988 -130903484 + MLT1J LTR MaLR 295 439 -72 487 273 21 105 chr11 17880362 17880509 -130902963 + MIR SINE MIR 28 150 -112 1784 155 14 14 chr11 17880509 17880826 -130902646 + AluJb SINE Alu 1 317 0 487 273 21 105 chr11 17880826 17880915 -130902557 + MIR SINE MIR 150 245 -17 1497 146 9 131 chr11 17880926 17881247 -130902225 + AluJo SINE Alu 1 282 -30 369 0 0 0 chr11 17881265 17881306 -130902166 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 2531 143 16 21 chr11 17881575 17882010 -130901462 + L1MC1 LINE L1 5896 6328 -5 1066 255 164 55 chr11 17882022 17882516 -130900956 - MLT1H LTR MaLR -1 548 1 294 295 62 0 chr11 17882516 17882628 -130900844 + MIR SINE MIR 141 259 -3 513 222 185 0 chr11 17883062 17883197 -130900275 - MIR SINE MIR -74 188 29 328 157 43 14 chr11 17884543 17884613 -130898859 - L2 LINE L2 -3 3310 3239 188 222 192 71 chr11 17885091 17885190 -130898282 - MIR SINE MIR -27 235 125 612 220 99 7 chr11 17885353 17885494 -130897978 - MIR SINE MIR -105 157 4 221 287 33 57 chr11 17885562 17885684 -130897788 - L2 LINE L2 -81 3191 3073 627 317 24 5 chr11 17885696 17885901 -130897571 + MIR SINE MIR 50 258 -4 293 210 290 0 chr11 17886510 17886610 -130896862 - L2 LINE L2 -220 3052 2924 214 330 6 22 chr11 17887481 17887660 -130895812 + C-rich Low_complexity Low_complexity 2 177 0 261 286 0 29 chr11 17888116 17888186 -130895286 + MIR3 SINE MIR 109 176 -32 636 275 90 5 chr11 17888904 17889126 -130894346 + MIR SINE MIR 20 260 -2 255 326 69 21 chr11 17889406 17889550 -130893922 - L3 LINE CR1 -1283 294 144 1442 204 204 15 chr11 17890066 17890522 -130892950 - MLT1F LTR MaLR 0 542 1 313 250 25 25 chr11 17890535 17890615 -130892857 + L2 LINE L2 3193 3272 0 194 323 15 15 chr11 17891182 17891247 -130892225 - L2 LINE L2 -7 3265 3201 1571 226 91 10 chr11 17891461 17891924 -130891548 + MLT1E2 LTR MaLR 137 614 -10 3492 161 35 18 chr11 17891924 17892603 -130890869 - L1MB7 LINE L1 -97 6087 5397 335 172 0 0 chr11 17892609 17892667 -130890805 + MLT1E2 LTR MaLR 594 651 -3 2567 256 44 51 chr11 17893213 17894306 -130889166 - L2 LINE L2 -37 3276 2195 382 274 9 9 chr11 17895871 17895977 -130887495 - MIR SINE MIR -65 143 38 595 295 46 25 chr11 17896271 17896508 -130886964 + MIR SINE MIR 8 249 -13 392 289 19 0 chr11 17897276 17897380 -130886092 - MIR3 SINE MIR -38 170 65 449 289 40 33 chr11 17898255 17898407 -130885065 - MIR SINE MIR -84 178 26 514 281 82 29 chr11 17898770 17899076 -130884396 + LTR16C LTR ERVL 168 489 -2 840 287 85 5 chr11 17900228 17900564 -130882908 + MIR SINE MIR 12 262 0 1991 143 0 7 chr11 17901024 17901317 -130882155 - AluSc SINE Alu -3 306 16 2225 120 3 16 chr11 17901962 17902278 -130881194 - AluSx SINE Alu 0 312 1 1842 139 58 4 chr11 17903876 17904192 -130879280 + AluSx SINE Alu 1 331 0 757 183 40 96 chr11 17904774 17905025 -130878447 - L1ME3A LINE L1 0 6170 5934 * 901 214 21 84 chr11 17905022 17905143 -130878329 - L1MD2 LINE L1 0 6359 6232 2306 106 0 16 chr11 17905143 17905454 -130878018 - AluSx SINE Alu -6 306 1 901 214 21 84 chr11 17905454 17905664 -130877808 - L1MD2 LINE L1 -127 6232 6049 * 917 232 48 53 chr11 17905647 17906082 -130877390 - L1ME3A LINE L1 -196 5966 5239 2425 100 129 5 chr11 17906082 17906463 -130877009 + MSTA LTR MaLR 1 428 0 917 232 48 53 chr11 17906463 17906551 -130876921 - L1ME3A LINE L1 -923 5239 5152 * 6069 165 31 21 chr11 17906518 17908022 -130875450 - L1MC1 LINE L1 -5 6328 4810 312 263 25 59 chr11 17908164 17908282 -130875190 + MIR SINE MIR 77 190 -72 190 332 30 84 chr11 17908587 17908789 -130874683 + MIR3 SINE MIR 16 206 -2 303 291 0 68 chr11 17908929 17909032 -130874440 + L1ME LINE L1 5644 5739 -382 442 287 48 108 chr11 17909160 17909428 -130874044 - L2 LINE L2 0 3272 3021 831 305 153 39 chr11 17909525 17910535 -130872937 - L2 LINE L2 -444 2870 1746 287 259 115 22 chr11 17911643 17911782 -130871690 - MIR3 SINE MIR -8 200 49 491 317 63 31 chr11 17912136 17912512 -130870960 - MLT1L LTR MaLR -10 605 186 480 226 30 17 chr11 17912577 17912727 -130870745 + MER58 DNA MER1_type 63 2420 0 289 279 38 89 chr11 17912727 17912883 -130870589 - MLT1L LTR MaLR -460 155 8 205 301 60 12 chr11 17912948 17913031 -130870441 - L3 LINE CR1 -3 1574 1488 779 263 31 0 chr11 17913174 17913429 -130870043 + L1M4 LINE L1 4198 4460 -1686 208 151 94 19 chr11 18113683 18113736 -130669736 + MIR SINE MIR 44 100 -108 1093 152 0 6 chr11 18114327 18114505 -130668967 - AluSg/x SINE Alu -12 300 124 347 345 95 12 chr11 18114526 18114694 -130668778 - L2 LINE L2 -3 3269 3088 378 320 23 8 chr11 18114831 18114959 -130668513 + MIR3 SINE MIR 3 132 -76 552 306 56 23 chr11 18115680 18115896 -130667576 - MIR SINE MIR -12 250 28 833 319 77 38 chr11 18116185 18116665 -130666807 - MLT1K LTR MaLR -86 502 4 349 91 0 18 chr11 18116665 18116720 -130666752 + L1MA2 LINE L1 6097 6150 -154 318 118 0 0 chr11 18116729 18116780 -130666692 + L1MA2 LINE L1 6098 6148 -156 1467 77 27 45 chr11 18116786 18116842 -130666630 + L1MA2 LINE L1 6088 6143 -161 2199 120 0 7 chr11 18116842 18117141 -130666331 + AluSx SINE Alu 1 297 -15 1467 77 27 45 chr11 18117141 18117305 -130666167 + L1MA2 LINE L1 6143 6304 0 224 245 0 0 chr11 18117465 18117514 -130665958 + L2 LINE L2 3264 3312 -1 8195 22 0 0 chr11 18118273 18119251 -130664221 - L1PA3 LINE L1 0 6155 5177 12332 28 1 25 chr11 18119251 18120755 -130662717 + L1PA3 LINE L1 3714 5180 -966 848 251 150 5 chr11 18120786 18120993 -130662479 - MIR SINE MIR -21 241 5 376 216 65 126 chr11 18121220 18121419 -130662053 + MLT1J2 LTR MaLR 264 450 0 702 236 31 75 chr11 18121781 18122141 -130661331 + L1M4 LINE L1 3656 3999 -2147 517 180 0 34 chr11 18122154 18122243 -130661229 - AluJ/FRAM SINE Alu -13 299 214 213 294 336 20 chr11 18122590 18122736 -130660736 + MIR SINE MIR 31 222 -40 207 273 55 0 chr11 18123627 18123682 -130659790 - L2 LINE L2 -47 3225 3168 301 309 43 11 chr11 18123777 18123871 -130659601 + L2 LINE L2 3138 3234 -38 * 510 275 98 26 chr11 18123865 18124058 -130659414 + MIR SINE MIR 51 257 -5 363 318 181 27 chr11 18124171 18124630 -130658842 - L2 LINE L2 -181 3091 2550 204 298 0 0 chr11 18125346 18125393 -130658079 + polypurine Low_complexity Low_complexity 3 49 0 521 287 74 32 chr11 18125733 18125949 -130657523 + MIR SINE MIR 28 252 -10 262 224 0 0 chr11 18125931 18125980 -130657492 - L2 LINE L2 -4 3309 3261 * 263 316 0 13 chr11 18126735 18126811 -130656661 + L2 LINE L2 3234 3308 -5 544 325 11 26 chr11 18127406 18127597 -130655875 + MIR3 SINE MIR 4 191 -17 412 257 181 21 chr11 18127614 18127758 -130655714 + MER5A DNA MER1_type 23 189 0 394 237 193 0 chr11 18128420 18128534 -130654938 + L2 LINE L2 3137 3272 0 300 220 17 0 chr11 18129516 18129575 -130653897 - L2 LINE L2 0 3272 3213 374 298 218 16 chr11 18129672 18129924 -130653548 + L2 LINE L2 3010 3312 -1 669 269 114 9 chr11 18129964 18130183 -130653289 + MIR SINE MIR 11 252 -10 558 303 29 6 chr11 18130593 18130768 -130652704 + MIR3 SINE MIR 3 181 -27 186 315 83 65 chr11 18131403 18131511 -130651961 - L2 LINE L2 -16 3256 3147 1314 141 11 0 chr11 18131661 18131846 -130651626 + MER5A DNA MER1_type 3 189 0 582 66 13 0 chr11 18132029 18132105 -130651367 + L1PA5 LINE L1 6078 6154 0 551 210 46 22 chr11 18133359 18133519 -130649953 + MIR SINE MIR 20 180 -66 23 68 0 0 chr11 18133993 18134037 -130649435 + AT_rich Low_complexity Low_complexity 1 44 0 225 0 0 0 chr11 18135084 18135109 -130648363 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 984 192 77 34 chr11 18135149 18135383 -130648089 + AluJo SINE Alu 29 272 -40 194 0 0 37 chr11 18135383 18135410 -130648062 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 446 271 99 7 chr11 18135424 18135575 -130647897 - MIR3 SINE MIR 0 208 44 558 253 27 54 chr11 18135618 18135804 -130647668 - L2 LINE L2 0 3313 3133 360 312 0 0 chr11 18136192 18136285 -130647187 + MIR3 SINE MIR 82 174 -34 936 273 71 21 chr11 18136795 18137174 -130646298 + L1ME4a LINE L1 5582 5987 -134 1864 161 6 22 chr11 18137174 18137491 -130645981 + AluSx SINE Alu 1 312 0 936 273 71 21 chr11 18137491 18137547 -130645925 + L1ME4a LINE L1 5987 6039 -82 25 0 0 0 chr11 18137593 18137618 -130645854 + AT_rich Low_complexity Low_complexity 1 25 0 296 167 136 0 chr11 18137654 18137720 -130645752 + L3 LINE CR1 1364 1438 -139 407 239 11 11 chr11 18138328 18138416 -130645056 - MIR SINE MIR -94 114 27 918 152 0 0 chr11 18140525 18140663 -130642809 - FRAM SINE Alu -39 137 1 252 276 40 81 chr11 18140924 18141098 -130642374 - L1MC4 LINE L1 -19 8023 7857 1172 73 6 18 chr11 18141128 18141292 -130642180 - L1MB3 LINE L1 -2 6181 6020 3921 136 16 11 chr11 18141296 18141942 -130641530 - L1MB3 LINE L1 -254 5917 5269 * 5888 233 54 24 chr11 18141930 18143711 -130639761 - L1MB3 LINE L1 -1391 4755 2922 1302 258 74 13 chr11 18143707 18143840 -130639632 - L1MC4 LINE L1 0 8042 7918 * 2290 109 0 0 chr11 18143840 18144151 -130639321 - AluY SINE Alu 0 311 1 1302 258 74 13 chr11 18144151 18144479 -130638993 - L1MC4 LINE L1 -124 7918 7553 695 176 24 0 chr11 18144480 18144605 -130638867 - L1ME LINE L1 -5937 133 6 1132 190 45 0 chr11 18145309 18145509 -130637963 - MER3 DNA MER1_type 0 209 1 794 103 9 0 chr11 18145614 18145721 -130637751 + AluSp SINE Alu 26 133 -180 1267 113 0 11 chr11 18145744 18145930 -130637542 + AluSq SINE Alu 127 310 -3 408 272 0 10 chr11 18146026 18146129 -130637343 - MIR SINE MIR -60 148 47 527 355 50 0 chr11 18146136 18146336 -130637136 + MIR SINE MIR 23 232 -30 251 357 45 9 chr11 18147053 18147165 -130636307 - L2 LINE L2 -1 3271 3156 546 303 63 6 chr11 18147643 18147818 -130635654 + MIR SINE MIR 64 248 -14 1274 173 148 0 chr11 18147872 18148109 -130635363 - AluSg SINE Alu -6 304 33 247 262 2 17 chr11 18148247 18148330 -130635142 - MIR SINE MIR -66 142 73 225 323 152 26 chr11 18149832 18150076 -130633396 - L2 LINE L2 -261 3011 2739 515 231 77 8 chr11 18150086 18150203 -130633269 - L2 LINE L2 0 3272 3148 230 283 38 75 chr11 18150262 18150368 -130633104 + L2 LINE L2 3168 3269 -3 289 374 26 53 chr11 18150384 18150574 -130632898 - L2 LINE L2 -571 2743 2559 224 368 32 0 chr11 18151267 18151362 -130632110 - MIR SINE MIR -65 143 46 348 250 105 17 chr11 18151626 18151766 -130631706 + MIR3 SINE MIR 11 163 -62 244 256 144 0 chr11 18152136 18152226 -130631246 + L2 LINE L2 3211 3313 0 412 333 80 33 chr11 18152365 18152788 -130630684 + L2 LINE L2 1528 1970 -1344 584 302 45 6 chr11 18153570 18153749 -130629723 - L2 LINE L2 0 3313 3128 283 238 21 119 chr11 18154766 18154909 -130628563 + MIR SINE MIR 79 207 -55 231 327 112 74 chr11 18155042 18155354 -130628118 + L2 LINE L2 2942 3265 -7 408 309 75 32 chr11 18156286 18156474 -130626998 + MIR SINE MIR 52 247 -15 311 319 156 22 chr11 18157509 18157785 -130625687 + L1ME LINE L1 5522 5834 -287 2351 93 0 28 chr11 18158774 18159095 -130624377 - AluSx SINE Alu 0 312 1 304 269 120 19 chr11 18159244 18159352 -130624120 + L2 LINE L2 3189 3307 -6 505 216 52 9 chr11 18159716 18159832 -130623640 - MIR SINE MIR -122 140 20 284 350 81 0 chr11 18160853 18160976 -130622496 + L2 LINE L2 2929 3061 -211 303 250 62 12 chr11 18161031 18161111 -130622361 - MIR3 SINE MIR -46 162 79 193 189 113 0 chr11 18161594 18161647 -130621825 - MIR SINE MIR -46 216 158 406 300 79 49 chr11 18161822 18162063 -130621409 - MIR SINE MIR -6 256 2 2406 94 0 0 chr11 18162826 18163133 -130620339 + AluSx SINE Alu 1 307 -5 279 0 0 0 chr11 18163291 18163322 -130620150 + (A)n Simple_repeat Simple_repeat 1 31 0 2029 142 7 0 chr11 18163322 18163610 -130619862 - AluSx SINE Alu -21 291 2 378 198 188 0 chr11 18163731 18163827 -130619645 - MIR SINE MIR -78 184 71 217 336 61 30 chr11 18164462 18164593 -130618879 + L3 LINE CR1 1441 1575 -2 2348 83 61 22 chr11 18164979 18165340 -130618132 + THE1C LTR MaLR 1 375 0 435 268 81 0 chr11 18165549 18165672 -130617800 + L2 LINE L2 3180 3312 -1 283 311 113 0 chr11 18165744 18165850 -130617622 + MIR SINE MIR 67 184 -78 385 289 70 7 chr11 18166282 18166424 -130617048 + MIR3 SINE MIR 56 206 -2 545 214 121 12 chr11 18166779 18166952 -130616520 - MIR SINE MIR -13 249 58 519 265 50 15 chr11 18166994 18167194 -130616278 - MIR SINE MIR -48 214 8 251 299 63 116 chr11 18167834 18168118 -130615354 + L2 LINE L2 2995 3263 -9 651 247 25 43 chr11 18168268 18168357 -130615115 - L2 LINE L2 -8 3305 3216 1476 177 3 63 chr11 18168357 18168657 -130614815 + AluJo SINE Alu 26 307 -5 651 247 25 43 chr11 18168657 18168802 -130614670 - L2 LINE L2 -97 3216 3075 466 274 44 0 chr11 18169492 18169627 -130613845 - MIR3 SINE MIR -52 156 16 455 300 29 29 chr11 18169810 18169980 -130613492 - MIR3 SINE MIR -11 197 28 15146 105 57 19 chr11 18170014 18170839 -130612633 + Tigger1 DNA MER2_type 24 816 -1602 2244 119 0 3 chr11 18170839 18171149 -130612323 + AluSg SINE Alu 1 309 -1 15146 105 57 19 chr11 18171149 18172631 -130610841 + Tigger1 DNA MER2_type 816 2418 0 357 210 76 51 chr11 18174546 18174698 -130608774 + MIR SINE MIR 38 199 -9 295 290 94 29 chr11 18175140 18175278 -130608194 + MIR SINE MIR 109 255 -7 352 264 101 15 chr11 18175935 18176065 -130607407 - MIR SINE MIR -61 147 43 2064 106 3 48 chr11 18176213 18176524 -130606948 - AluSg SINE Alu -13 297 1 240 343 59 0 chr11 18176573 18176675 -130606797 + L3 LINE CR1 163 270 -1307 392 282 213 29 chr11 18177061 18177338 -130606134 - L2 LINE L2 -60 3253 2926 1908 193 28 6 chr11 18177534 18177891 -130605581 + MLT1A1 LTR MaLR 1 365 0 353 337 60 20 chr11 18177974 18178173 -130605299 + MIR SINE MIR 50 256 -6 408 277 14 21 chr11 18178611 18178752 -130604720 + MIR3 SINE MIR 67 206 -2 194 254 151 8 chr11 18179408 18179534 -130603938 + L2 LINE L2 3111 3254 -18 269 333 17 17 chr11 18179664 18179781 -130603691 + MIR3 SINE MIR 83 199 -9 338 294 25 25 chr11 18180131 18180250 -130603222 - MIR3 SINE MIR -54 154 36 664 251 192 18 chr11 18180445 18180784 -130602688 - L1ME4a LINE L1 -74 6047 5650 224 248 89 10 chr11 18180804 18180905 -130602567 - MIR3 SINE MIR -13 195 87 2000 141 0 13 chr11 18181725 18182029 -130601443 - AluJo SINE Alu -12 300 1 595 229 95 34 chr11 18182139 18182318 -130601154 + MIR3 SINE MIR 17 206 -2 247 232 0 18 chr11 18182871 18182927 -130600545 + MIR SINE MIR 98 152 -56 275 261 139 0 chr11 18183406 18183521 -130599951 - MIR SINE MIR -30 232 102 232 320 0 0 chr11 18183554 18183604 -130599868 - L2 LINE L2 -81 3191 3142 577 295 89 58 chr11 18183778 18184099 -130599373 - L2 LINE L2 -282 2990 2656 2596 139 24 2 chr11 18184099 18184516 -130598956 - MSTA LTR MaLR -2 426 1 577 295 89 58 chr11 18184516 18184627 -130598845 - L2 LINE L2 -616 2656 2550 315 330 34 17 chr11 18184606 18184724 -130598748 - MIR SINE MIR -137 125 6 * 541 251 89 22 chr11 18184726 18184905 -130598567 - L2 LINE L2 0 3313 3123 313 246 43 65 chr11 18185198 18185336 -130598136 - MIR SINE MIR -55 207 73 804 180 8 0 chr11 18185776 18185904 -130597568 - MER20 DNA MER1_type 0 219 91 204 333 0 0 chr11 18186811 18186865 -130596607 + L2 LINE L2 3133 3186 -86 236 291 43 77 chr11 18187227 18187344 -130596128 - L2 LINE L2 -49 3223 3111 199 162 0 0 chr11 18188944 18188981 -130594491 - L2 LINE L2 -5 3308 3272 535 211 43 56 chr11 18189235 18189396 -130594076 + MIR3 SINE MIR 1 159 -49 240 188 175 0 chr11 18189412 18189485 -130593987 - MER102b DNA MER1_type -38 303 220 1223 152 57 46 chr11 18189614 18189877 -130593595 + MER33 DNA MER1_type 1 266 -58 246 370 20 0 chr11 18189908 18190008 -130593464 - MIR SINE MIR -73 135 34 429 273 33 66 chr11 18190116 18190299 -130593173 + MIR3 SINE MIR 29 205 -3 1933 108 3 76 chr11 18190698 18191014 -130592458 - AluSx SINE Alu -18 294 2 252 156 0 0 chr11 18191070 18191115 -130592357 + L1MB8 LINE L1 6085 6129 -49 30 83 0 0 chr11 18191136 18191208 -130592264 + AT_rich Low_complexity Low_complexity 1 72 0 217 382 32 0 chr11 18191392 18191515 -130591957 + MIR3 SINE MIR 66 192 -16 357 203 47 23 chr11 18192185 18192313 -130591159 + (TAGA)n Simple_repeat Simple_repeat 2 132 0 242 257 338 0 chr11 18192629 18192765 -130590707 - MIR SINE MIR -56 206 25 936 246 76 38 chr11 18193089 18193377 -130590095 + L1MC4 LINE L1 6451 6749 -1293 2302 54 0 7 chr11 18194148 18194428 -130589044 + AluY SINE Alu 31 308 -3 224 57 0 29 chr11 18195011 18195046 -130588426 + (GA)n Simple_repeat Simple_repeat 1 34 0 447 335 12 12 chr11 18196174 18196344 -130587128 - MIR3 SINE MIR -22 186 17 4728 145 45 50 chr11 18196702 18196875 -130586597 + L1MB3 LINE L1 5154 5326 -857 1581 173 35 0 chr11 18196875 18197135 -130586337 + AluJb SINE Alu 24 292 -20 4728 145 45 50 chr11 18197135 18197985 -130585487 + L1MB3 LINE L1 5326 6183 0 1573 206 0 17 chr11 18198058 18198350 -130585122 + AluJo SINE Alu 1 287 -25 356 243 9 0 chr11 18198353 18198464 -130585008 + (TATATG)n Simple_repeat Simple_repeat 2 113 0 1339 224 20 66 chr11 18198467 18198874 -130584598 + MLT1B LTR MaLR 2 389 -1 2607 147 31 2 chr11 18198874 18199322 -130584150 + L1MD1 LINE L1 5777 6237 -5 425 286 97 19 chr11 18199673 18199879 -130583593 + MIR SINE MIR 20 241 -21 2046 145 0 19 chr11 18200061 18200378 -130583094 + AluJo SINE Alu 1 311 -1 182 216 0 0 chr11 18200676 18200713 -130582759 - L3 LINE CR1 -15 1562 1526 845 203 61 0 chr11 18200713 18200876 -130582596 - MER58B DNA MER1_type 0 341 169 389 223 143 30 chr11 18200898 18201122 -130582350 - L3 LINE CR1 -44 1533 1221 1849 157 213 34 chr11 18201122 18201600 -130581872 + MLT1F1 LTR MaLR 1 564 -3 207 254 105 26 chr11 18201605 18201719 -130581753 - L3 LINE CR1 -354 1223 1101 191 270 87 78 chr11 18201749 18201864 -130581608 + L2 LINE L2 3106 3221 -51 396 293 26 0 chr11 18201869 18201985 -130581487 - L3 LINE CR1 -489 1088 970 211 308 104 92 chr11 18202317 18202730 -130580742 + L2 LINE L2 2855 3272 0 723 239 17 0 chr11 18203276 18203448 -130580024 + MER33 DNA MER1_type 1 165 -99 1265 103 6 0 chr11 18203448 18203622 -130579850 + AluSg/x SINE Alu 132 306 -6 1156 174 88 3 chr11 18203635 18203866 -130579606 + L1MB7 LINE L1 5925 6173 -11 528 120 90 0 chr11 18203866 18203966 -130579506 + MER33 DNA MER1_type 216 324 0 204 354 122 7 chr11 18205880 18206027 -130577445 - L3b LINE CR1 -6 1577 1414 2021 127 0 53 chr11 18206048 18206371 -130577101 - AluSx SINE Alu -6 306 1 612 228 172 14 chr11 18206907 18206962 -130576510 - MIR SINE MIR -9 253 208 826 186 110 68 chr11 18206962 18207226 -130576246 - ORSL DNA AcHobo 0 275 1 612 228 172 14 chr11 18207226 18207385 -130576087 - MIR SINE MIR -54 208 5 359 200 76 90 chr11 18207543 18207688 -130575784 + MIR3 SINE MIR 64 206 -2 21 0 0 0 chr11 18208104 18208125 -130575347 + AT_rich Low_complexity Low_complexity 1 21 0 206 325 39 13 chr11 18209486 18209563 -130573909 + MIR3 SINE MIR 130 208 0 846 195 85 9 chr11 18209642 18209916 -130573556 - MER46C DNA MER2_type -2 336 1 261 57 0 0 chr11 18210073 18210108 -130573364 + (CATA)n Simple_repeat Simple_repeat 2 36 0 456 168 93 0 chr11 18210254 18210361 -130573111 - MIR SINE MIR -62 200 84 556 233 140 26 chr11 18210488 18210716 -130572756 + L2 LINE L2 3057 3310 -3 423 98 0 0 chr11 18211013 18211074 -130572398 + (CA)n Simple_repeat Simple_repeat 1 61 0 2007 148 28 60 chr11 18211098 18211498 -130571974 + MLT1B LTR MaLR 4 390 0 373 280 106 32 chr11 18211992 18212181 -130571291 - L2 LINE L2 -1 3312 3110 23 0 0 0 chr11 18212868 18212891 -130570581 + GC_rich Low_complexity Low_complexity 1 23 0 498 122 0 0 chr11 18215133 18215231 -130568241 + (GA)n Simple_repeat Simple_repeat 1 98 0 1107 136 0 6 chr11 18215753 18215922 -130567550 - AluJb SINE Alu -8 304 137 216 214 71 0 chr11 18215926 18215982 -130567490 - MIR SINE MIR -115 147 88 250 279 60 28 chr11 18215982 18216146 -130567326 + L1ME LINE L1 1 169 -5901 2768 137 99 29 chr11 18216710 18217275 -130566197 + MER4B LTR ERV1 1 779 0 565 113 0 2 chr11 18217855 18218102 -130565370 + AluSx SINE Alu 1 296 -16 2453 68 0 0 chr11 18218294 18218602 -130564870 + AluY SINE Alu 1 308 -3 24 0 0 0 chr11 18220316 18220340 -130563132 + AT_rich Low_complexity Low_complexity 1 24 0 325 319 22 14 chr11 18222087 18222225 -130561247 - MIR3 SINE MIR -2 206 68 483 244 49 0 chr11 18222709 18222834 -130560638 - MIR SINE MIR -45 163 28 264 385 35 7 chr11 18223839 18223982 -130559490 - L2 LINE L2 -4 3268 3122 238 330 0 52 chr11 18225049 18225146 -130558326 + MIR3 SINE MIR 85 176 -32 848 284 141 32 chr11 18227041 18227803 -130555669 + L2 LINE L2 2458 3309 -4 202 258 81 16 chr11 18227814 18227876 -130555596 - MIR SINE MIR -169 93 28 307 337 51 28 chr11 18227961 18228139 -130555333 - L1ME4a LINE L1 -4 6117 5936 1122 151 0 11 chr11 18228210 18228395 -130555077 + AluSg/x SINE Alu 130 312 0 427 244 93 111 chr11 18228666 18229470 -130554002 - L1ME3A LINE L1 -209 5953 5174 830 287 52 52 chr11 18229480 18229975 -130553497 - L1ME LINE L1 -299 5822 5328 1072 229 55 28 chr11 18229983 18230236 -130553236 + MIR SINE MIR 3 262 0 311 267 21 38 chr11 18231016 18231166 -130552306 - MIR SINE MIR -35 227 23 578 227 227 6 chr11 18231186 18231362 -130552110 - MER58C DNA MER1_type 0 215 1 525 250 89 76 chr11 18232514 18232750 -130550722 + MLT1J LTR MaLR 94 332 -179 490 201 106 7 chr11 18232778 18232918 -130550554 - MIR SINE MIR -65 143 33 756 231 173 9 chr11 18232947 18233172 -130550300 - MIR SINE MIR 0 262 1 212 372 74 0 chr11 18234088 18234209 -130549263 - L2 LINE L2 -25 3247 3118 241 254 16 0 chr11 18234225 18234288 -130549184 + L1MC/D LINE L1 5668 5731 -2077 2083 145 78 13 chr11 18234710 18235082 -130548390 + MSTD LTR MaLR 1 396 0 181 250 56 14 chr11 18235329 18235401 -130548071 - L2 LINE L2 -641 2673 2599 1347 259 183 7 chr11 18235443 18236106 -130547366 + L2 LINE L2 2529 3312 -1 217 246 15 15 chr11 18236609 18236674 -130546798 - MIR SINE MIR -56 152 88 263 313 137 28 chr11 18237133 18237344 -130546128 - MIR SINE MIR -6 256 23 226 395 105 3 chr11 18237533 18237829 -130545643 - L3 LINE CR1 -460 1117 792 867 185 22 29 chr11 18238538 18238850 -130544622 - L1MC1 LINE L1 -1 6332 5989 1265 288 121 28 chr11 18238876 18239292 -130544180 - L2 LINE L2 -16 3297 2921 2550 45 0 0 chr11 18239292 18239601 -130543871 + AluY SINE Alu 1 309 -2 1265 288 121 28 chr11 18239601 18240061 -130543411 - L2 LINE L2 -392 2921 2316 1525 217 98 41 chr11 18240862 18241403 -130542069 + L2 LINE L2 2737 3312 -1 273 313 263 6 chr11 18241837 18242016 -130541456 + MIR SINE MIR 32 256 -6 180 77 0 0 chr11 18242857 18242883 -130540589 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 281 292 42 71 chr11 18242948 18243116 -130540356 + MIR SINE MIR 100 262 0 613 276 29 12 chr11 18243554 18243724 -130539748 + MIR3 SINE MIR 30 202 -6 194 405 17 26 chr11 18243910 18244026 -130539446 - MIR SINE MIR -73 135 21 270 292 84 45 chr11 18244078 18244256 -130539216 + MIR SINE MIR 13 146 -62 530 305 82 13 chr11 18244718 18244951 -130538521 - MIR SINE MIR -2 260 12 2794 135 17 7 chr11 18246580 18247002 -130536470 - MSTB LTR MaLR 0 426 1 182 315 65 0 chr11 18247510 18247602 -130535870 - L2 LINE L2 -260 3012 2915 191 277 0 0 chr11 18247888 18247935 -130535537 - MIR SINE MIR -11 251 205 184 276 0 92 chr11 18248733 18248809 -130534663 + L2 LINE L2 2978 3046 -226 272 263 11 42 chr11 18248829 18248924 -130534548 - MIR3 SINE MIR -8 200 109 219 218 127 73 chr11 18249008 18249118 -130534354 + L2 LINE L2 3138 3253 -19 507 349 12 0 chr11 18249495 18249661 -130533811 - MIR3 SINE MIR -24 184 17 193 227 80 57 chr11 18249993 18250081 -130533391 - L2 LINE L2 -4 3268 3179 325 291 0 0 chr11 18250268 18250347 -130533125 + L2 LINE L2 3235 3313 0 195 236 45 56 chr11 18250957 18251046 -130532426 + L2 LINE L2 2960 3047 -225 251 245 11 64 chr11 18251108 18251202 -130532270 + L2 LINE L2 3224 3312 -1 485 265 25 107 chr11 18251435 18251631 -130531841 + MIR SINE MIR 37 216 -46 336 345 80 9 chr11 18251657 18251812 -130531660 - MIR3 SINE MIR -66 142 2 1849 146 191 13 chr11 18252499 18252877 -130530595 + MLT2C2 LTR ERVL 1 445 -19 268 163 0 0 chr11 18252900 18252943 -130530529 + MLT2C2 LTR ERVL 422 464 0 284 232 21 53 chr11 18252956 18253051 -130530421 - MIR SINE MIR -54 208 117 1665 157 0 27 chr11 18253286 18253586 -130529886 + AluJo SINE Alu 11 302 -10 1998 91 0 54 chr11 18253695 18254017 -130529455 + AluSx SINE Alu 1 306 0 2260 88 7 0 chr11 18254020 18254327 -130529145 + AluSc SINE Alu 1 309 0 963 209 4 74 chr11 18255517 18255592 -130527880 - MIR SINE MIR 0 262 183 2332 70 0 13 chr11 18255592 18255894 -130527578 - AluY SINE Alu -13 298 1 963 209 4 74 chr11 18255894 18256062 -130527410 - MIR SINE MIR -79 183 36 382 276 126 0 chr11 18256066 18256193 -130527279 - MIR SINE MIR -71 191 49 319 296 22 52 chr11 18256618 18256753 -130526719 + MIR SINE MIR 65 195 -67 647 285 68 51 chr11 18256768 18257009 -130526463 - MIR SINE MIR -10 252 4 345 325 80 25 chr11 18257038 18257403 -130526069 + L2 LINE L2 2659 3090 -182 412 282 167 0 chr11 18257761 18257972 -130525500 - MIR3 SINE MIR 0 262 3 1752 140 16 32 chr11 18258208 18258522 -130524950 - AluJb SINE Alu -3 309 1 654 249 30 18 chr11 18258808 18258977 -130524495 + MIR SINE MIR 2 172 -90 1131 229 108 39 chr11 18259008 18259340 -130524132 + MLT1D LTR MaLR 1 355 -150 817 203 101 65 chr11 18259392 18259668 -130523804 + MLT1C LTR MaLR 164 449 -18 370 361 16 0 chr11 18259786 18259908 -130523564 + L2 LINE L2 3190 3313 0 499 252 44 31 chr11 18259911 18260070 -130523402 + L2 LINE L2 2891 3051 -221 310 260 83 0 chr11 18261107 18261203 -130522269 - MIR SINE MIR -102 160 57 3244 164 38 23 chr11 18261209 18261817 -130521655 - L1MC3 LINE L1 -8 7777 7161 889 259 92 76 chr11 18262181 18262398 -130521074 + MLT1J LTR MaLR 1 213 -298 2511 37 0 0 chr11 18262398 18262693 -130520779 + AluY SINE Alu 1 295 -16 889 259 92 76 chr11 18262693 18262891 -130520581 + MLT1J LTR MaLR 213 426 -85 1897 164 41 41 chr11 18262891 18263281 -130520191 - MLT1B LTR MaLR 0 390 1 889 259 92 76 chr11 18263281 18263323 -130520149 + MLT1J LTR MaLR 426 466 -45 483 256 43 34 chr11 18263487 18263604 -130519868 - L2 LINE L2 -1 3271 3154 348 208 100 83 chr11 18264308 18264428 -130519044 + MIR SINE MIR 49 170 -92 345 248 109 0 chr11 18264478 18264579 -130518893 - MIR SINE MIR 0 262 151 971 154 17 0 chr11 18264909 18265084 -130518388 + L1MB3 LINE L1 5997 6174 -9 274 232 0 59 chr11 18265310 18265404 -130518068 - MIR SINE MIR -108 100 14 406 284 55 8 chr11 18267487 18267614 -130515858 + MIR SINE MIR 7 139 -123 287 282 218 21 chr11 18267645 18267787 -130515685 - MER5A DNA MER1_type -10 179 10 304 178 27 55 chr11 18268582 18268655 -130514817 + L2 LINE L2 3201 3271 -1 978 203 72 23 chr11 18268741 18268905 -130514567 - MSTD LTR MaLR 0 396 241 1023 117 0 0 chr11 18268905 18269067 -130514405 + (GA)n Simple_repeat Simple_repeat 2 163 0 978 203 72 23 chr11 18269067 18269237 -130514235 - MSTD LTR MaLR -155 241 1 555 264 25 6 chr11 18269492 18269651 -130513821 - MER5A DNA MER1_type -9 180 19 311 236 36 55 chr11 18270399 18270509 -130512963 + MIR SINE MIR 36 143 -65 2145 120 48 34 chr11 18270511 18270869 -130512603 + THE1B LTR MaLR 2 364 0 11520 84 21 16 chr11 18270869 18272435 -130511037 + THE1B-int LTR MaLR 1 1574 -6 2078 129 47 47 chr11 18272440 18272804 -130510668 + THE1B LTR MaLR 1 364 0 227 286 0 0 chr11 18272807 18272856 -130510616 + L3 LINE CR1 1518 1566 -11 292 235 163 0 chr11 18273285 18273383 -130510089 + L2 LINE L2 3156 3269 -3 329 362 32 27 chr11 18273852 18274040 -130509432 + L2 LINE L2 3081 3269 -3 379 269 11 0 chr11 18274459 18274552 -130508920 - L2 LINE L2 -2 3270 3177 271 233 0 0 chr11 18274790 18274850 -130508622 + MER117 DNA MER1_type 74 133 -64 276 292 174 66 chr11 18275004 18275367 -130508105 + L2 LINE L2 2871 3272 0 2401 116 41 46 chr11 18275694 18276034 -130507438 + MSTB1 LTR MaLR 21 360 -72 2231 97 0 26 chr11 18276034 18276343 -130507129 - AluSg SINE Alu -9 301 1 2401 116 41 46 chr11 18276343 18276416 -130507056 + MSTB1 LTR MaLR 360 432 0 436 301 46 0 chr11 18276866 18277019 -130506453 - MIR SINE MIR -6 256 97 336 291 35 14 chr11 18277006 18277147 -130506325 + MIR SINE MIR 93 236 -26 * 200 245 0 0 chr11 18277185 18277234 -130506238 - MIR SINE MIR -156 106 58 287 340 1 47 chr11 18277274 18277444 -130506028 + MIR SINE MIR 40 200 -59 385 260 104 26 chr11 18278162 18278316 -130505156 - MIR SINE MIR -66 196 31 240 236 211 0 chr11 18278380 18278503 -130504969 - L3 LINE CR1 -3 1574 1426 843 305 78 66 chr11 18279610 18280607 -130502865 + L2 LINE L2 2302 3311 -2 369 275 179 34 chr11 18280812 18281019 -130502453 - MIR SINE MIR -11 251 15 547 303 56 17 chr11 18281724 18281958 -130501514 - MIR SINE MIR -18 244 2 322 302 48 24 chr11 18282060 18282186 -130501286 - L2 LINE L2 -5 3267 3139 279 268 71 77 chr11 18282296 18282464 -130501008 - MER5A DNA MER1_type -11 167 1 * 292 273 0 0 chr11 18282464 18282538 -130500934 - MIR3 SINE MIR -53 155 82 32 57 0 0 chr11 18282591 18282644 -130500828 + AT_rich Low_complexity Low_complexity 1 53 0 1015 114 228 0 chr11 18283187 18283277 -130500195 + MER30 DNA MER1_type 1 69 -161 240 43 65 0 chr11 18283277 18283323 -130500149 + A-rich Low_complexity Low_complexity 2 50 0 1015 114 228 0 chr11 18283323 18283416 -130500056 + MER30 DNA MER1_type 69 226 -4 192 333 0 10 chr11 18283716 18283812 -130499660 - L2 LINE L2 -1231 2083 1989 258 284 33 95 chr11 18283816 18284027 -130499445 + MIR3 SINE MIR 4 201 -7 202 235 102 92 chr11 18284096 18284194 -130499278 - MIR3 SINE MIR -1 207 109 234 195 322 0 chr11 18284266 18284353 -130499119 + L2 LINE L2 3158 3272 0 504 321 31 0 chr11 18285052 18285214 -130498258 + MIR SINE MIR 84 250 -12 430 255 115 35 chr11 18285776 18285976 -130497496 + MIR SINE MIR 32 247 -15 427 285 17 6 chr11 18286130 18286302 -130497170 - MER5B DNA MER1_type -4 174 1 184 327 0 0 chr11 18286443 18286498 -130496974 - L2 LINE L2 -14 3299 3245 435 278 28 17 chr11 18287058 18287238 -130496234 - L1ME LINE L1 -377 5744 5563 350 311 37 15 chr11 18287251 18287386 -130496086 - MIR3 SINE MIR -67 141 4 562 302 51 24 chr11 18288005 18288260 -130495212 - MIR SINE MIR 0 262 1 1834 179 93 6 chr11 18288328 18288681 -130494791 - MSTD LTR MaLR -12 384 1 312 319 51 7 chr11 18289298 18289437 -130494035 + MIR SINE MIR 17 146 -62 642 296 38 5 chr11 18289511 18289724 -130493748 - MIR SINE MIR -27 235 16 554 179 0 41 chr11 18290545 18290668 -130492804 - MIR SINE MIR -125 137 20 302 227 184 30 chr11 18291102 18291278 -130492194 - MIR SINE MIR -49 213 7 519 260 72 83 chr11 18291380 18291645 -130491827 + MIR SINE MIR 1 262 0 206 310 0 42 chr11 18291648 18291719 -130491753 + L2 LINE L2 3193 3260 -12 1998 84 9 96 chr11 18292088 18292420 -130491052 + AluSx SINE Alu 1 303 -9 392 278 8 38 chr11 18292978 18293111 -130490361 + MLT2C2 LTR ERVL 336 464 0 237 261 29 14 chr11 18293183 18293252 -130490220 + L1MC/D LINE L1 5470 5539 -2246 372 327 90 0 chr11 18293264 18293420 -130490052 - MIR SINE MIR -37 225 56 1253 206 79 20 chr11 18293798 18294124 -130489348 - Tigger7 DNA MER2_type 0 2491 1 207 344 48 42 chr11 18294148 18294337 -130489135 + MIR3 SINE MIR 16 205 -3 470 212 152 0 chr11 18294996 18295147 -130488325 + MIR SINE MIR 89 262 0 424 255 102 19 chr11 18295578 18295735 -130487737 + MIR3 SINE MIR 36 205 -3 4459 269 99 43 chr11 18296196 18297037 -130486435 + HAL1 LINE L1 2 794 -1713 1171 238 148 30 chr11 18297037 18297503 -130485969 - LTR33 LTR ERVL 0 521 1 4459 269 99 43 chr11 18297503 18299034 -130484438 + HAL1 LINE L1 794 2507 0 343 336 48 0 chr11 18299045 18299170 -130484302 + MIR SINE MIR 18 148 -114 335 283 94 49 chr11 18299603 18299847 -130483625 - MIR SINE MIR -6 256 2 225 321 131 15 chr11 18300330 18300643 -130482829 + L2 LINE L2 2697 3060 -212 411 297 149 0 chr11 18300695 18300843 -130482629 - MIR3 SINE MIR -23 185 16 281 306 28 9 chr11 18301495 18301603 -130481869 + MIR SINE MIR 126 235 -27 261 0 0 0 chr11 18301986 18302015 -130481457 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 457 264 8 8 chr11 18302300 18302421 -130481051 - MIR3 SINE MIR -13 195 75 307 236 0 0 chr11 18303190 18303245 -130480227 + MIR SINE MIR 45 99 -109 322 290 38 15 chr11 18303295 18303426 -130480046 + L1P LINE L1 4902 5035 -1111 5254 112 58 50 chr11 18303453 18304401 -130479071 + Tigger3b DNA MER2_type 13 968 -263 315 218 0 0 chr11 18304566 18304621 -130478851 + MIR SINE MIR 45 99 -109 1366 96 32 0 chr11 18304703 18304890 -130478582 + Tigger3b DNA MER2_type 1017 1209 -22 1883 133 0 41 chr11 18304901 18305089 -130478383 - AluSx SINE Alu -30 282 88 2282 104 67 20 chr11 18305089 18305435 -130478037 - THE1B LTR MaLR -2 362 1 11893 100 5 1 chr11 18305435 18307009 -130476463 - THE1B-int LTR MaLR 0 1580 1 2423 93 48 22 chr11 18307009 18307364 -130476108 - THE1B LTR MaLR 0 364 1 1883 133 0 41 chr11 18307364 18307467 -130476005 - AluSx SINE Alu -221 91 1 328 297 54 54 chr11 18307502 18307786 -130475686 + L1MC4a LINE L1 5039 5325 -821 1659 195 60 14 chr11 18307786 18308135 -130475337 - MLT1A1 LTR MaLR 0 365 1 328 297 54 54 chr11 18308135 18308146 -130475326 + L1MC4a LINE L1 5324 5334 -812 2082 198 33 54 chr11 18308148 18308290 -130475182 + MLT1D LTR MaLR 1 145 -360 2482 108 13 24 chr11 18308290 18308669 -130474803 + THE1C LTR MaLR 1 375 0 2082 198 33 54 chr11 18308669 18309041 -130474431 + MLT1D LTR MaLR 145 504 -1 265 171 0 68 chr11 18309061 18309149 -130474323 + L1MC4a LINE L1 5347 5428 -2380 2793 216 100 64 chr11 18309151 18309618 -130473854 + L1ME3 LINE L1 4678 5127 -1035 2018 58 0 4 chr11 18309618 18309858 -130473614 + AluY SINE Alu 62 300 -11 2793 216 100 64 chr11 18309858 18310796 -130472676 + L1ME3 LINE L1 5127 6161 -1 1983 271 42 12 chr11 18310791 18311437 -130472035 + L1MC4a LINE L1 5412 6076 -1732 * 357 284 35 35 chr11 18311589 18311730 -130471742 + MIR SINE MIR 73 213 -49 315 0 0 0 chr11 18312038 18312073 -130471399 + (GGA)n Simple_repeat Simple_repeat 1 35 0 209 278 41 76 chr11 18312612 18312783 -130470689 - MIR3 SINE MIR -66 142 12 740 239 148 17 chr11 18313317 18313547 -130469925 - MIR SINE MIR 0 262 3 610 213 43 24 chr11 18313785 18313949 -130469523 + LTR45 LTR ERV1 359 525 0 269 264 284 0 chr11 18314867 18315015 -130468457 - MIR SINE MIR -53 209 20 194 321 18 36 chr11 18315468 18315580 -130467892 - L2 LINE L2 -25 3247 3138 388 287 30 0 chr11 18315636 18315737 -130467735 - MIR3 SINE MIR -7 201 98 724 239 118 0 chr11 18315755 18315975 -130467497 - MIR SINE MIR 0 262 19 320 262 64 50 chr11 18316809 18316950 -130466522 + HAL1b LINE L1 1204 1346 -2 528 289 111 64 chr11 18317073 18317495 -130465977 + L2 LINE L2 2831 3272 0 308 290 153 32 chr11 18317772 18317896 -130465576 - MIR3 SINE MIR -14 194 56 812 126 6 88 chr11 18317896 18318055 -130465417 - L1MA6 LINE L1 -323 5977 5832 971 126 84 0 chr11 18318055 18318242 -130465230 + L1MA8 LINE L1 6082 6288 -3 681 196 348 10 chr11 18318738 18319034 -130464438 + L1ME4a LINE L1 5725 6120 -1 592 295 62 21 chr11 18319298 18319539 -130463933 - MIR SINE MIR 0 262 12 320 259 38 76 chr11 18319982 18320167 -130463305 + MIR SINE MIR 20 197 -65 393 281 83 109 chr11 18320204 18320509 -130462963 + L2 LINE L2 2706 3010 -262 2240 112 0 10 chr11 18320509 18320822 -130462650 + AluSx SINE Alu 1 310 -2 393 281 83 109 chr11 18320822 18320911 -130462561 + L2 LINE L2 3010 3100 -172 494 270 55 6 chr11 18321800 18321963 -130461509 - MIR SINE MIR -15 247 77 193 313 78 9 chr11 18323266 18323381 -130460091 - MIR SINE MIR -53 209 87 187 358 68 49 chr11 18323483 18323645 -130459827 + L2 LINE L2 2447 2611 -703 1680 178 7 14 chr11 18323703 18323990 -130459482 - AluJo SINE Alu -18 294 10 497 263 0 66 chr11 18324370 18324522 -130458950 + MIR3 SINE MIR 2 143 -65 230 293 121 76 chr11 18324591 18324703 -130458769 + L3 LINE CR1 232 358 -1219 1578 165 25 38 chr11 18324703 18325019 -130458453 + AluSx SINE Alu 1 312 0 230 293 121 76 chr11 18325019 18325104 -130458368 + L3 LINE CR1 358 438 -1139 234 234 0 117 chr11 18325720 18325814 -130457658 + L3 LINE CR1 423 505 -1072 1127 205 139 0 chr11 18325916 18326218 -130457254 + L1ME3 LINE L1 5466 5809 -353 1929 99 55 126 chr11 18326218 18326583 -130456889 + Charlie3 DNA MER1_type 1 2712 0 4900 229 81 29 chr11 18326667 18327004 -130456468 + L1MC4a LINE L1 6230 6548 -1260 456 19 0 0 chr11 18327004 18327057 -130456415 + (CA)n Simple_repeat Simple_repeat 2 54 0 4900 229 81 29 chr11 18327057 18328220 -130455252 + L1MC4a LINE L1 6548 7808 0 563 207 5 0 chr11 18328301 18328414 -130455058 + L1ME3 LINE L1 6054 6162 0 798 229 75 96 chr11 18328615 18328947 -130454525 + L1MC4 LINE L1 6445 6769 -1273 833 148 0 16 chr11 18328970 18329098 -130454374 - FLAM_C SINE Alu -17 126 1 1486 153 37 11 chr11 18329098 18329366 -130454106 + L1MC4 LINE L1 6776 7050 -992 1542 308 124 31 chr11 18329384 18330196 -130453276 + L3 LINE CR1 582 1469 -108 822 246 182 45 chr11 18330529 18330996 -130452476 + MLT1H LTR MaLR 6 536 -13 600 230 9 0 chr11 18331071 18331184 -130452288 - MER90 LTR ERV1 0 614 501 400 138 35 0 chr11 18331184 18331242 -130452230 + AluSp/q SINE Alu 206 265 -48 1944 108 18 11 chr11 18331253 18331539 -130451933 - MER90 LTR ERV1 -325 289 2 348 260 39 19 chr11 18331549 18331653 -130451819 - MIR SINE MIR -70 192 87 * 420 320 77 10 chr11 18331638 18331832 -130451640 + MIR SINE MIR 46 252 -10 344 233 58 0 chr11 18332737 18332823 -130450649 - MIR SINE MIR -109 153 63 309 221 39 13 chr11 18332956 18333033 -130450439 + L2 LINE L2 3227 3305 -8 21 36 0 0 chr11 18334024 18334052 -130449420 + AT_rich Low_complexity Low_complexity 1 28 0 889 247 173 26 chr11 18334052 18334509 -130448963 - L1ME4a LINE L1 -2 6119 5596 218 342 0 0 chr11 18334519 18334595 -130448877 + L3 LINE CR1 1084 1159 -418 316 309 131 38 chr11 18334614 18334850 -130448622 - MIR SINE MIR 0 262 5 187 290 29 43 chr11 18334851 18334920 -130448552 + L3 LINE CR1 1169 1236 -341 2467 193 38 8 chr11 18335010 18335487 -130447985 + MLT1E2 LTR MaLR 136 626 0 1046 180 0 14 chr11 18335489 18335706 -130447766 + L1ME2 LINE L1 5758 5971 -193 24 0 0 0 chr11 18336101 18336125 -130447347 + AT_rich Low_complexity Low_complexity 1 24 0 212 184 26 0 chr11 18336323 18336361 -130447111 - L2 LINE L2 -676 2638 2600 482 275 42 7 chr11 18336361 18336503 -130446969 + MIR SINE MIR 49 195 -67 2862 132 29 5 chr11 18336802 18337219 -130446253 + MSTA LTR MaLR 1 427 -1 650 260 35 0 chr11 18337329 18337502 -130445970 - MIR SINE MIR -1 261 83 407 202 73 81 chr11 18337644 18337668 -130445804 - L2 LINE L2 -4 3268 3245 1772 152 19 16 chr11 18337668 18337977 -130445495 + AluJo SINE Alu 1 310 -2 407 202 73 81 chr11 18337977 18338076 -130445396 - L2 LINE L2 -27 3245 3146 888 270 60 8 chr11 18338129 18338377 -130445095 + MIR SINE MIR 2 262 0 397 321 80 52 chr11 18339030 18339704 -130443768 + L2 LINE L2 2366 3061 -211 233 318 45 9 chr11 18339885 18339995 -130443477 + MIR SINE MIR 93 206 -56 245 341 47 0 chr11 18341043 18341128 -130442344 + MIR SINE MIR 72 160 -102 230 240 0 150 chr11 18343776 18343822 -130439650 + MIR3 SINE MIR 109 134 -74 207 0 0 0 chr11 18343822 18343845 -130439627 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 230 240 0 150 chr11 18343845 18343898 -130439574 + MIR3 SINE MIR 134 193 -15 209 390 11 0 chr11 18343983 18344078 -130439394 + L2 LINE L2 2968 3063 -209 180 0 0 0 chr11 18345161 18345181 -130438291 + (A)n Simple_repeat Simple_repeat 1 20 0 519 324 93 0 chr11 18345192 18345374 -130438098 + MIR3 SINE MIR 5 203 -5 632 329 90 66 chr11 18345919 18346512 -130436960 + L2 LINE L2 2481 3083 -189 391 277 23 73 chr11 18347076 18347263 -130436209 + MIR SINE MIR 12 192 -63 216 0 0 0 chr11 18348168 18348192 -130435280 + (CA)n Simple_repeat Simple_repeat 2 25 0 192 77 0 0 chr11 18348192 18348218 -130435254 + (TC)n Simple_repeat Simple_repeat 1 26 0 1632 181 17 35 chr11 18348264 18348551 -130434921 - AluJo SINE Alu -30 282 1 204 40 0 0 chr11 18348630 18348655 -130434817 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 270 221 182 13 chr11 18349015 18349092 -130434380 - L2 LINE L2 -3 3269 3180 571 265 191 5 chr11 18349094 18349283 -130434189 - MIR SINE MIR -6 256 33 292 100 62 0 chr11 18349316 18349396 -130434076 + (TA)n Simple_repeat Simple_repeat 1 85 0 308 217 29 0 chr11 18349396 18349465 -130434007 - L1MA10 LINE L1 -32 6302 6232 1833 157 18 0 chr11 18349501 18349781 -130433691 - AluJb SINE Alu -23 289 5 286 250 29 0 chr11 18349785 18349853 -130433619 - L1MA10 LINE L1 -90 6244 6175 680 210 82 36 chr11 18350344 18350539 -130432933 + L1MD3 LINE L1 7784 7987 -8 476 256 71 18 chr11 18350567 18350731 -130432741 - MIR SINE MIR -27 235 65 367 264 0 50 chr11 18350857 18350978 -130432494 + MIR SINE MIR 93 207 -55 497 304 110 22 chr11 18351812 18352262 -130431210 + L2 LINE L2 2553 3055 -217 470 305 0 23 chr11 18352269 18352400 -130431072 - MER5B DNA MER1_type -3 175 48 973 184 6 6 chr11 18352417 18352580 -130430892 - FRAM SINE Alu -3 163 1 189 0 0 0 chr11 18352584 18352605 -130430867 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 204 262 0 0 chr11 18352631 18352673 -130430799 - MER5B DNA MER1_type -136 42 1 600 248 153 0 chr11 18352786 18353008 -130430464 - L2 LINE L2 -20 3293 3038 196 271 29 43 chr11 18353061 18353131 -130430341 + L2 LINE L2 3227 3295 -18 255 103 0 0 chr11 18353143 18353182 -130430290 + (TGAA)n Simple_repeat Simple_repeat 4 42 0 345 281 0 34 chr11 18353182 18353271 -130430201 + L2 LINE L2 3186 3271 -1 442 315 62 11 chr11 18353326 18353504 -130429968 - MIR3 SINE MIR -2 206 20 21 57 0 0 chr11 18354340 18354375 -130429097 + AT_rich Low_complexity Low_complexity 1 35 0 256 179 192 26 chr11 18354475 18354553 -130428919 + MER5A DNA MER1_type 75 165 -24 461 243 37 0 chr11 18354589 18354696 -130428776 + MIR SINE MIR 152 262 0 770 197 9 136 chr11 18354859 18354927 -130428545 + MER5A DNA MER1_type 1 76 -113 4857 99 3 2 chr11 18354927 18355570 -130427902 + L1PB1 LINE L1 5506 6149 -2 770 197 9 136 chr11 18355570 18355714 -130427758 + MER5A DNA MER1_type 76 186 -3 530 210 252 0 chr11 18355734 18355877 -130427595 + MER5A DNA MER1_type 10 188 -1 554 245 168 0 chr11 18355949 18356145 -130427327 - MIR SINE MIR -14 248 20 227 213 66 16 chr11 18356498 18356559 -130426913 - L2 LINE L2 0 3272 3209 216 67 0 0 chr11 18356619 18356649 -130426823 + (CA)n Simple_repeat Simple_repeat 2 31 0 198 103 0 0 chr11 18356649 18356678 -130426794 + (TC)n Simple_repeat Simple_repeat 2 30 0 285 343 90 24 chr11 18356685 18356851 -130426621 - L2 LINE L2 -181 3091 2915 646 276 167 0 chr11 18357615 18357807 -130425665 + L2 LINE L2 2824 3047 -266 994 92 0 0 chr11 18357817 18357947 -130425525 + AluSp/q SINE Alu 169 298 -15 2217 119 0 0 chr11 18357951 18358254 -130425218 + AluY SINE Alu 1 303 -8 465 192 88 93 chr11 18358290 18358483 -130424989 + L2 LINE L2 3103 3294 -19 382 283 8 33 chr11 18358490 18358610 -130424862 - MIR SINE MIR -112 150 34 336 326 0 0 chr11 18359360 18359449 -130424023 + MIR SINE MIR 168 256 -6 213 294 336 20 chr11 18360652 18360798 -130422674 + MIR SINE MIR 31 222 -40 207 273 55 0 chr11 18361689 18361744 -130421728 - L2 LINE L2 -47 3225 3168 301 309 43 11 chr11 18361839 18361933 -130421539 + L2 LINE L2 3138 3234 -38 * 489 280 98 26 chr11 18361927 18362120 -130421352 + MIR SINE MIR 51 257 -5 367 315 184 27 chr11 18362241 18362692 -130420780 - L2 LINE L2 -189 3083 2550 204 298 0 0 chr11 18363329 18363376 -130420096 + polypurine Low_complexity Low_complexity 3 49 0 521 287 74 32 chr11 18363716 18363932 -130419540 + MIR SINE MIR 28 252 -10 262 224 0 0 chr11 18363914 18363963 -130419509 - L2 LINE L2 -4 3309 3261 * 263 316 0 13 chr11 18364718 18364794 -130418678 + L2 LINE L2 3234 3308 -5 544 325 11 26 chr11 18365389 18365580 -130417892 + MIR3 SINE MIR 4 191 -17 412 257 181 21 chr11 18365597 18365741 -130417731 + MER5A DNA MER1_type 23 189 0 394 237 193 0 chr11 18366403 18366517 -130416955 + L2 LINE L2 3137 3272 0 315 237 79 0 chr11 18367499 18367575 -130415897 - L2 LINE L2 0 3313 3232 409 306 218 16 chr11 18367655 18367907 -130415565 + L2 LINE L2 3010 3312 -1 694 265 114 9 chr11 18367947 18368166 -130415306 + MIR SINE MIR 11 252 -10 571 303 29 6 chr11 18368576 18368751 -130414721 + MIR3 SINE MIR 3 181 -27 182 296 83 65 chr11 18369386 18369494 -130413978 - L2 LINE L2 -16 3256 3147 1264 141 11 0 chr11 18369644 18369829 -130413643 + MER5A DNA MER1_type 3 189 0 548 66 13 0 chr11 18370012 18370088 -130413384 + L1PA5 LINE L1 6078 6154 0 557 219 45 22 chr11 18371342 18371514 -130411958 + MIR SINE MIR 20 192 -66 23 68 0 0 chr11 18371976 18372020 -130411452 + AT_rich Low_complexity Low_complexity 1 44 0 225 0 0 0 chr11 18373067 18373092 -130410380 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 1014 192 77 34 chr11 18373132 18373366 -130410106 + AluJo SINE Alu 29 272 -40 194 0 0 37 chr11 18373366 18373393 -130410079 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 443 271 99 7 chr11 18373407 18373558 -130409914 - MIR3 SINE MIR 0 208 44 571 253 27 54 chr11 18373601 18373787 -130409685 - L2 LINE L2 0 3313 3133 362 312 0 0 chr11 18374175 18374268 -130409204 + MIR3 SINE MIR 82 174 -34 796 278 70 20 chr11 18374778 18375157 -130408315 + L1ME4a LINE L1 5582 5988 -133 1918 177 0 16 chr11 18375157 18375474 -130407998 + AluSx SINE Alu 1 312 0 796 278 70 20 chr11 18375474 18375537 -130407935 + L1ME4a LINE L1 5988 6046 -75 25 0 0 0 chr11 18375576 18375601 -130407871 + AT_rich Low_complexity Low_complexity 1 25 0 293 155 84 42 chr11 18375637 18375708 -130407764 + L3 LINE CR1 1364 1437 -140 413 239 11 11 chr11 18376311 18376399 -130407073 - MIR SINE MIR -94 114 27 205 370 17 44 chr11 18378230 18378411 -130405061 + MIR SINE MIR 36 211 -51 938 152 0 0 chr11 18378508 18378646 -130404826 - FRAM SINE Alu -39 137 1 437 290 70 70 chr11 18378907 18379107 -130404365 - L1MC4 LINE L1 -19 8023 7824 1097 85 6 6 chr11 18379111 18379275 -130404197 - L1MB3 LINE L1 0 6183 6020 3683 136 16 11 chr11 18379279 18379925 -130403547 - L1MB3 LINE L1 -254 5917 5269 * 5315 241 52 22 chr11 18379913 18381694 -130401778 - L1MB3 LINE L1 -1391 4755 2922 1184 258 74 13 chr11 18381690 18381823 -130401649 - L1MC4 LINE L1 0 8042 7918 * 2326 113 0 0 chr11 18381823 18382134 -130401338 - AluY SINE Alu 0 311 1 1184 258 74 13 chr11 18382134 18382462 -130401010 - L1MC4 LINE L1 -124 7918 7553 649 176 24 0 chr11 18382463 18382588 -130400884 - L1ME LINE L1 -5937 133 6 1073 190 45 0 chr11 18383292 18383492 -130399980 - MER3 DNA MER1_type 0 209 1 762 103 9 0 chr11 18383597 18383704 -130399768 + AluSp SINE Alu 26 133 -180 1283 120 0 10 chr11 18383721 18383913 -130399559 + AluSq SINE Alu 121 310 -3 416 272 0 10 chr11 18384009 18384112 -130399360 - MIR SINE MIR -60 148 47 553 350 50 0 chr11 18384119 18384319 -130399153 + MIR SINE MIR 23 232 -30 253 357 45 9 chr11 18385036 18385148 -130398324 - L2 LINE L2 -1 3271 3156 559 303 63 6 chr11 18385626 18385801 -130397671 + MIR SINE MIR 64 248 -14 1318 173 148 0 chr11 18385855 18386092 -130397380 - AluSg SINE Alu -6 304 33 252 262 2 17 chr11 18386230 18386313 -130397159 - MIR SINE MIR -66 142 73 223 325 152 26 chr11 18387815 18388059 -130395413 - L2 LINE L2 -261 3011 2739 530 231 77 8 chr11 18388069 18388186 -130395286 - L2 LINE L2 0 3272 3148 224 333 38 38 chr11 18388245 18388350 -130395122 + L2 LINE L2 3168 3272 0 296 374 26 53 chr11 18388367 18388557 -130394915 - L2 LINE L2 -571 2743 2559 225 368 32 0 chr11 18389250 18389345 -130394127 - MIR SINE MIR -65 143 46 361 256 104 16 chr11 18389609 18389734 -130393738 + MIR3 SINE MIR 11 146 -62 251 256 144 0 chr11 18390119 18390209 -130393263 + L2 LINE L2 3211 3313 0 477 333 80 33 chr11 18390348 18390771 -130392701 + L2 LINE L2 1528 1970 -1344 606 302 45 6 chr11 18391553 18391732 -130391740 - L2 LINE L2 0 3313 3128 310 238 21 119 chr11 18392749 18392892 -130390580 + MIR SINE MIR 79 207 -55 220 327 112 74 chr11 18393025 18393337 -130390135 + L2 LINE L2 2942 3265 -7 422 309 75 32 chr11 18394269 18394457 -130389015 + MIR SINE MIR 52 247 -15 630 242 188 4 chr11 18404260 18404500 -130378972 + MLT1J2 LTR MaLR 158 441 -9 428 310 17 0 chr11 18404773 18404889 -130378583 + L3 LINE CR1 1427 1544 -33 295 287 19 19 chr11 18405788 18405896 -130377576 - MIR3 SINE MIR -10 198 91 210 143 0 0 chr11 18405996 18406031 -130377441 + (TTCC)n Simple_repeat Simple_repeat 4 38 0 180 97 0 0 chr11 18406042 18406073 -130377399 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 841 153 0 29 chr11 18406073 18406199 -130377273 - FLAM_C SINE Alu -188 124 1 221 245 0 0 chr11 18406226 18406277 -130377195 + CT-rich Low_complexity Low_complexity 1 51 0 282 282 0 0 chr11 18406310 18406441 -130377031 + CT-rich Low_complexity Low_complexity 1 131 0 223 359 40 48 chr11 18407274 18407577 -130375895 + L2 LINE L2 2751 3064 -208 322 308 75 8 chr11 18408293 18408426 -130375046 - MIR SINE MIR -74 188 47 1185 113 65 0 chr11 18408444 18408612 -130374860 - AluSg/x SINE Alu 0 312 134 1956 74 7 52 chr11 18408612 18408883 -130374589 - AluSx SINE Alu -15 297 39 365 241 37 0 chr11 18410554 18410662 -130372810 + MIR3 SINE MIR 60 171 -37 534 189 29 14 chr11 18411460 18411893 -130371579 + (TG)n Simple_repeat Simple_repeat 1 439 0 240 150 38 0 chr11 18411940 18412020 -130371452 + (TG)n Simple_repeat Simple_repeat 1 83 0 418 204 27 0 chr11 18412035 18412300 -130371172 + (TG)n Simple_repeat Simple_repeat 1 272 0 258 254 105 26 chr11 18413171 18413285 -130370187 + MIR3 SINE MIR 8 130 -78 183 329 47 12 chr11 18413919 18414004 -130369468 - MER5A DNA MER1_type -75 114 27 327 314 97 0 chr11 18414104 18414228 -130369244 + MIR3 SINE MIR 9 144 -64 252 344 84 0 chr11 18414848 18414979 -130368493 - MIR SINE MIR -37 225 84 16913 102 21 6 chr11 18415766 18418148 -130365324 + Tigger1 DNA MER2_type 1 2418 0 510 351 89 29 chr11 18418167 18418483 -130364989 - L3 LINE CR1 -64 1513 1179 560 240 120 26 chr11 18418669 18418861 -130364611 - MIR SINE MIR -50 212 3 348 24 0 0 chr11 18419197 18419238 -130364234 + (TG)n Simple_repeat Simple_repeat 2 42 0 368 278 77 98 chr11 18419319 18419646 -130363826 - L2 LINE L2 -5 3267 2948 3022 268 93 20 chr11 18419657 18420792 -130362680 + L2 LINE L2 1934 3153 -160 192 267 58 35 chr11 18420832 18420918 -130362554 - MIR SINE MIR -128 134 47 252 241 48 12 chr11 18420950 18421033 -130362439 + L2 LINE L2 3127 3212 -101 285 271 30 68 chr11 18422495 18422628 -130360844 + MIR3 SINE MIR 65 192 -16 276 176 0 0 chr11 18422767 18422818 -130360654 - L2 LINE L2 0 3272 3222 706 275 62 25 chr11 18422894 18423134 -130360338 - MIR SINE MIR -6 256 8 421 288 0 31 chr11 18424324 18424484 -130358988 + (TCCA)n Simple_repeat Simple_repeat 4 158 0 190 347 21 42 chr11 18424516 18424611 -130358861 - MIR3 SINE MIR -1 207 115 * 305 279 22 59 chr11 18424594 18424730 -130358742 + MIR SINE MIR 41 171 -91 206 311 53 67 chr11 18424931 18425140 -130358332 - L2 LINE L2 -214 3058 2853 429 286 110 18 chr11 18425528 18425749 -130357723 - MIR SINE MIR -8 254 11 263 350 50 14 chr11 18425857 18425997 -130357475 - MIR SINE MIR -78 184 40 591 228 129 18 chr11 18426521 18426692 -130356780 - MIR SINE MIR -67 195 6 670 227 29 19 chr11 18427150 18427357 -130356115 - L1PB4 LINE L1 0 6156 5948 716 258 253 21 chr11 18427381 18427761 -130355711 + L2 LINE L2 2846 3313 0 284 240 94 0 chr11 18428477 18428573 -130354899 - MIR SINE MIR -71 137 33 748 259 132 0 chr11 18428759 18428971 -130354501 - MIR SINE MIR -3 259 20 244 268 0 28 chr11 18429184 18429255 -130354217 + G-rich Low_complexity Low_complexity 1 69 0 1142 285 160 11 chr11 18429691 18430472 -130353000 - L2 LINE L2 0 3313 2399 485 245 192 0 chr11 18430616 18430767 -130352705 - MER5A DNA MER1_type 0 189 10 460 346 0 0 chr11 18431521 18431651 -130351821 - MIR3 SINE MIR -3 205 76 613 321 28 36 chr11 18432456 18432705 -130350767 + MIR SINE MIR 2 248 -14 278 280 85 8 chr11 18432944 18433062 -130350410 + MIR3 SINE MIR 33 159 -49 354 232 69 62 chr11 18433559 18433704 -130349768 + MIR SINE MIR 23 171 -71 663 294 112 17 chr11 18433831 18434290 -130349182 - L2 LINE L2 -251 3062 2555 554 262 14 7 chr11 18434341 18434482 -130348990 - MIR SINE MIR 0 262 121 210 37 0 0 chr11 18435091 18435118 -130348354 + (CA)n Simple_repeat Simple_repeat 2 28 0 273 128 0 0 chr11 18436046 18436093 -130347379 + (CA)n Simple_repeat Simple_repeat 2 48 0 261 0 0 0 chr11 18436357 18436386 -130347086 + (CA)n Simple_repeat Simple_repeat 1 29 0 359 231 32 64 chr11 18436680 18436836 -130346636 + MIR3 SINE MIR 4 154 -54 236 286 14 0 chr11 18437561 18437631 -130345841 + MIR SINE MIR 30 100 -108 329 248 48 0 chr11 18438164 18438269 -130345203 - MIR3 SINE MIR -18 190 81 309 269 28 21 chr11 18438821 18438962 -130344510 + (CA)n Simple_repeat Simple_repeat 1 142 0 377 147 27 0 chr11 18440020 18440095 -130343377 + GA-rich Low_complexity Low_complexity 2 78 0 27 29 0 0 chr11 18440428 18440462 -130343010 + GC_rich Low_complexity Low_complexity 1 34 0 229 246 53 9 chr11 18440769 18440883 -130342589 + (CGGGG)n Simple_repeat Simple_repeat 5 123 0 215 132 26 0 chr11 18440878 18440916 -130342556 + (CCG)n Simple_repeat Simple_repeat 2 40 0 * 22 0 0 0 chr11 18441122 18441144 -130342328 + GC_rich Low_complexity Low_complexity 1 22 0 432 0 0 0 chr11 18441461 18441509 -130341963 + (CA)n Simple_repeat Simple_repeat 2 49 0 233 349 48 16 chr11 18441941 18442067 -130341405 - L2 LINE L2 -1 3271 3142 183 186 0 0 chr11 18442674 18442717 -130340755 + (GCCTG)n Simple_repeat Simple_repeat 3 45 0 432 55 0 0 chr11 18442831 18442886 -130340586 + (CA)n Simple_repeat Simple_repeat 2 56 0 729 218 13 19 chr11 18444095 18444251 -130339221 + MIR SINE MIR 13 167 -95 1047 170 40 58 chr11 18444924 18445147 -130338325 - MER20 DNA MER1_type 0 219 1 268 281 64 29 chr11 18445148 18445257 -130338215 + MIR SINE MIR 34 144 -64 916 208 29 0 chr11 18445763 18446004 -130337468 - MER69 DNA AcHobo 0 2526 2279 3776 184 47 38 chr11 18446297 18446910 -130336562 + L1MB7 LINE L1 4656 5262 -922 2121 122 35 40 chr11 18446910 18447287 -130336185 - THE1C LTR MaLR 0 375 1 3776 184 47 38 chr11 18447287 18447829 -130335643 + L1MB7 LINE L1 5262 5837 -347 2273 94 7 0 chr11 18447829 18448128 -130335344 + AluSx SINE Alu 1 301 -11 3776 184 47 38 chr11 18448128 18448461 -130335011 + L1MB7 LINE L1 5837 6165 -19 273 323 72 30 chr11 18448606 18448773 -130334699 - MIR3 SINE MIR -1 207 43 2691 189 14 12 chr11 18449158 18449810 -130333662 - MER69 DNA AcHobo -263 2263 1611 735 244 159 7 chr11 18449811 18450082 -130333390 - MER69 DNA AcHobo -2214 312 1 257 254 17 0 chr11 18450407 18450466 -130333006 + MIR SINE MIR 8 67 -195 2098 106 0 4 chr11 18450528 18450803 -130332669 - AluSg SINE Alu -31 279 6 743 244 28 6 chr11 18451250 18451430 -130332042 + MER91A DNA MER1_type 12 195 -1 359 380 18 22 chr11 18451467 18451693 -130331779 + L2 LINE L2 3051 3275 -38 313 337 127 42 chr11 18451686 18452294 -130331178 + L2 LINE L2 2581 3232 -40 * 267 31 0 0 chr11 18452730 18452762 -130330710 + (TG)n Simple_repeat Simple_repeat 1 32 0 280 244 22 44 chr11 18452779 18452869 -130330603 + L2 LINE L2 2997 3084 -188 394 244 0 84 chr11 18453255 18453386 -130330086 + MER5B DNA MER1_type 4 123 -55 22 35 0 0 chr11 18454829 18454858 -130328614 + GC_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chr11 18455416 18455450 -130328022 + GC_rich Low_complexity Low_complexity 1 34 0 264 346 47 16 chr11 18457222 18457349 -130326123 + MIR SINE MIR 54 184 -78 1381 247 211 24 chr11 18458069 18458947 -130324525 - L2 LINE L2 -14 3299 2252 1051 358 98 8 chr11 18458948 18459689 -130323783 + L2 LINE L2 2502 3313 0 297 200 0 57 chr11 18460032 18460102 -130323370 + L2 LINE L2 3248 3313 0 757 274 54 68 chr11 18461879 18462215 -130321257 - L2 LINE L2 -36 3277 2947 249 256 26 13 chr11 18462221 18462299 -130321173 - L2 LINE L2 -21 3251 3173 2069 107 0 29 chr11 18462375 18462683 -130320789 - AluSx SINE Alu -13 299 1 241 297 22 44 chr11 18463480 18463571 -130319901 + L3b LINE CR1 1295 1383 -200 432 344 65 65 chr11 18466046 18466401 -130317071 - L2 LINE L2 -14 3258 2904 394 319 30 0 chr11 18466574 18466709 -130316763 + MIR3 SINE MIR 16 154 -54 495 310 97 9 chr11 18467144 18467360 -130316112 + MIR SINE MIR 28 262 0 287 259 9 30 chr11 18467799 18467915 -130315557 - MIR SINE MIR -79 129 37 569 271 52 18 chr11 18468376 18468605 -130314867 - L1MC5 LINE L1 -48 7913 7677 1312 198 77 75 chr11 18468607 18468979 -130314493 - L1MC5 LINE L1 -191 7770 7400 244 0 0 0 chr11 18468979 18469006 -130314466 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2167 51 0 11 chr11 18469006 18469280 -130314192 - AluY SINE Alu -1 310 14 1312 198 77 75 chr11 18469280 18469436 -130314036 - L1MC5 LINE L1 -560 7401 7240 1170 346 74 31 chr11 18469456 18470471 -130313001 + L2 LINE L2 1785 2842 -472 199 191 86 142 chr11 18470537 18470699 -130312773 + L2 LINE L2 2932 3084 -188 * 210 186 264 70 chr11 18470692 18470821 -130312651 + MIR SINE MIR 109 262 0 1377 243 53 49 chr11 18470944 18471022 -130312450 + MLT1J LTR MaLR 6 82 -429 1820 191 34 16 chr11 18471022 18471405 -130312067 - MLT1B LTR MaLR 0 390 1 1377 243 53 49 chr11 18471405 18471611 -130311861 + MLT1J LTR MaLR 82 295 -216 2268 184 108 17 chr11 18471611 18472072 -130311400 + MLT1D LTR MaLR 3 505 0 1377 243 53 49 chr11 18472072 18472218 -130311254 + MLT1J LTR MaLR 295 439 -72 480 273 21 105 chr11 18472592 18472739 -130310733 + MIR SINE MIR 28 150 -112 1647 155 14 14 chr11 18472739 18473056 -130310416 + AluJb SINE Alu 1 317 0 480 273 21 105 chr11 18473056 18473145 -130310327 + MIR SINE MIR 150 245 -17 1359 146 9 131 chr11 18473156 18473477 -130309995 + AluJo SINE Alu 1 282 -30 369 0 0 0 chr11 18473495 18473536 -130309936 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 2531 140 16 21 chr11 18473805 18474240 -130309232 + L1MC1 LINE L1 5896 6328 -5 1019 253 164 55 chr11 18474252 18474746 -130308726 - MLT1H LTR MaLR -1 548 1 299 295 62 0 chr11 18474746 18474858 -130308614 + MIR SINE MIR 141 259 -3 509 222 185 0 chr11 18475292 18475427 -130308045 - MIR SINE MIR -74 188 29 326 157 43 14 chr11 18476773 18476843 -130306629 - L2 LINE L2 -3 3310 3239 191 222 192 71 chr11 18477321 18477420 -130306052 - MIR SINE MIR -27 235 125 611 220 99 7 chr11 18477583 18477724 -130305748 - MIR SINE MIR -105 157 4 209 287 33 57 chr11 18477792 18477914 -130305558 - L2 LINE L2 -81 3191 3073 620 317 24 5 chr11 18477926 18478131 -130305341 + MIR SINE MIR 50 258 -4 279 210 290 0 chr11 18478740 18478840 -130304632 - L2 LINE L2 -220 3052 2924 214 330 6 22 chr11 18479712 18479891 -130303581 + C-rich Low_complexity Low_complexity 2 177 0 262 286 0 29 chr11 18480347 18480417 -130303055 + MIR3 SINE MIR 109 176 -32 651 284 86 0 chr11 18481135 18481357 -130302115 + MIR SINE MIR 20 260 -2 247 326 69 21 chr11 18481637 18481781 -130301691 - L3 LINE CR1 -1283 294 144 1380 204 204 15 chr11 18482297 18482753 -130300719 - MLT1F LTR MaLR 0 542 1 311 250 25 25 chr11 18482766 18482846 -130300626 + L2 LINE L2 3193 3272 0 191 323 15 15 chr11 18483413 18483478 -130299994 - L2 LINE L2 -7 3265 3201 1729 229 126 10 chr11 18483611 18484118 -130299354 + MLT1E2 LTR MaLR 12 577 -49 3832 163 34 20 chr11 18484118 18484834 -130298638 - L1MB7 LINE L1 -62 6122 5397 350 172 0 0 chr11 18484840 18484898 -130298574 + MLT1E2 LTR MaLR 594 651 -3 2554 256 44 51 chr11 18485444 18486537 -130296935 - L2 LINE L2 -37 3276 2195 378 274 9 9 chr11 18488102 18488208 -130295264 - MIR SINE MIR -65 143 38 597 295 46 25 chr11 18488502 18488739 -130294733 + MIR SINE MIR 8 249 -13 383 289 19 0 chr11 18489507 18489611 -130293861 - MIR3 SINE MIR -38 170 65 450 289 40 33 chr11 18490486 18490638 -130292834 - MIR SINE MIR -84 178 26 609 299 77 35 chr11 18490932 18491307 -130292165 + LTR16C LTR ERVL 99 489 -2 851 287 85 5 chr11 18492455 18492791 -130290681 + MIR SINE MIR 12 262 0 1848 139 0 7 chr11 18493256 18493544 -130289928 - AluSc SINE Alu -8 301 16 2068 120 3 16 chr11 18494189 18494505 -130288967 - AluSx SINE Alu 0 312 1 1723 135 58 4 chr11 18496103 18496419 -130287053 + AluSx SINE Alu 1 331 0 982 227 62 141 chr11 18497001 18497370 -130286102 - L1ME3A LINE L1 0 6170 5773 2136 109 0 16 chr11 18497370 18497681 -130285791 - AluSx SINE Alu -6 306 1 982 227 62 141 chr11 18497681 18498309 -130285163 - L1ME3A LINE L1 -397 5773 5245 2405 100 129 5 chr11 18498309 18498690 -130284782 + MSTA LTR MaLR 1 428 0 982 227 62 141 chr11 18498690 18498778 -130284694 - L1ME3A LINE L1 -925 5245 5152 * 6399 165 31 21 chr11 18498745 18500249 -130283223 - L1MC1 LINE L1 -5 6328 4810 312 263 25 59 chr11 18500391 18500509 -130282963 + MIR SINE MIR 77 190 -72 184 332 30 84 chr11 18500814 18501016 -130282456 + MIR3 SINE MIR 16 206 -2 301 291 0 68 chr11 18501156 18501259 -130282213 + L1ME LINE L1 5644 5739 -382 442 287 48 108 chr11 18501387 18501655 -130281817 - L2 LINE L2 0 3272 3021 769 305 153 39 chr11 18501752 18502762 -130280710 - L2 LINE L2 -444 2870 1746 1776 148 0 42 chr11 18504313 18504449 -130279023 + AluJb SINE Alu 1 141 -171 2217 109 0 3 chr11 18504449 18504761 -130278711 + AluSq SINE Alu 1 311 -2 1776 148 0 42 chr11 18504761 18504934 -130278538 + AluJb SINE Alu 141 297 -15 489 196 16 119 chr11 18505221 18505375 -130278097 - MER69A DNA AcHobo -2350 176 44 857 207 6 6 chr11 18505375 18505549 -130277923 + MER5B DNA MER1_type 4 177 -1 489 196 16 119 chr11 18505549 18505588 -130277884 - MER69A DNA AcHobo -2482 44 3 258 264 0 0 chr11 18505609 18505662 -130277810 - L2 LINE L2 0 3272 3220 * 326 241 0 58 chr11 18505649 18505736 -130277736 + L2 LINE L2 3191 3272 0 1073 140 0 0 chr11 18506349 18506513 -130276959 + AluSg/x SINE Alu 134 297 -15 22 0 0 0 chr11 18506523 18506545 -130276927 + AT_rich Low_complexity Low_complexity 1 22 0 196 282 24 47 chr11 18507342 18507427 -130276045 + L2 LINE L2 3231 3313 0 2191 90 0 13 chr11 18509901 18510201 -130273271 + AluSx SINE Alu 1 296 -16 329 264 73 36 chr11 18510545 18510655 -130272817 - MIR SINE MIR -66 196 83 407 338 145 11 chr11 18511163 18511432 -130272040 + L2 LINE L2 2228 2532 -782 329 227 82 36 chr11 18512008 18512118 -130271354 - MLT1F LTR MaLR -20 522 408 845 185 0 13 chr11 18512138 18512295 -130271177 - FRAM SINE Alu -21 155 1 344 226 43 33 chr11 18512423 18512543 -130270929 - MLT1H LTR MaLR -264 162 57 367 211 92 0 chr11 18512694 18512770 -130270702 + L2 LINE L2 3214 3296 -17 616 303 70 8 chr11 18513035 18513276 -130270196 + MIR SINE MIR 3 258 -4 1672 167 38 7 chr11 18514319 18514441 -130269031 + AluJo SINE Alu 1 118 -184 1905 105 6 94 chr11 18514441 18514579 -130268893 + AluSx SINE Alu 1 150 -162 2227 113 0 0 chr11 18514579 18514889 -130268583 + AluSg SINE Alu 1 310 0 1905 105 6 94 chr11 18514889 18515092 -130268380 + AluSx SINE Alu 150 312 0 1672 167 38 7 chr11 18515092 18515262 -130268210 + AluJo SINE Alu 118 302 0 588 189 33 59 chr11 18515262 18515415 -130268057 - L1MC5 LINE L1 -82 7879 7731 555 186 0 35 chr11 18515471 18515584 -130267888 + FLAM_A SINE Alu 34 142 0 266 0 0 29 chr11 18516188 18516223 -130267249 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2414 55 10 7 chr11 18516800 18517109 -130266363 + AluY SINE Alu 1 310 -1 2252 65 11 0 chr11 18518032 18518334 -130265138 + AluY SINE Alu 1 305 0 1696 138 3 21 chr11 18519223 18519505 -130263967 - L1PA16 LINE L1 -1 6165 5889 369 355 71 54 chr11 18519900 18520366 -130263106 + L2 LINE L2 2373 2847 -467 1946 144 3 0 chr11 18520867 18521151 -130262321 - AluJb SINE Alu -8 304 20 23 54 0 0 chr11 18521673 18521710 -130261762 + AT_rich Low_complexity Low_complexity 1 37 0 242 289 156 22 chr11 18522020 18522200 -130261272 - L2 LINE L2 -5 3308 3105 842 164 0 14 chr11 18522294 18522434 -130261038 + AluJb SINE Alu 1 138 -174 957 248 134 48 chr11 18522441 18522897 -130260575 + L2 LINE L2 2552 3044 -269 244 305 29 99 chr11 18522920 18523027 -130260445 + L1M4 LINE L1 3923 4036 -2110 2007 144 0 0 chr11 18523027 18523305 -130260167 - AluSx SINE Alu -34 278 1 244 305 29 99 chr11 18523305 18523469 -130260003 + L1M4 LINE L1 4036 4175 -1971 836 187 0 0 chr11 18523661 18523795 -130259677 + FRAM SINE Alu 18 151 -25 2144 131 0 6 chr11 18523805 18524118 -130259354 + AluSx SINE Alu 1 311 -1 533 217 112 20 chr11 18524673 18524825 -130258647 - L2 LINE L2 0 3313 3148 383 369 130 42 chr11 18525186 18525571 -130257901 - L2 LINE L2 -9 3263 2845 541 179 94 8 chr11 18525642 18525759 -130257713 - L1PA16 LINE L1 -4 6162 6036 270 365 0 0 chr11 18525869 18525954 -130257518 - L2 LINE L2 -644 2670 2586 189 228 88 0 chr11 18526094 18526151 -130257321 - L2 LINE L2 -899 2415 2354 1588 198 7 3 chr11 18527155 18527443 -130256029 + AluJo SINE Alu 1 289 -23 237 281 96 50 chr11 18527953 18528152 -130255320 - L1ME3A LINE L1 0 6170 5963 21 0 0 0 chr11 18528183 18528204 -130255268 + AT_rich Low_complexity Low_complexity 1 21 0 959 273 56 6 chr11 18528326 18528682 -130254790 - L1ME3A LINE L1 -266 5904 5531 21 57 0 0 chr11 18529587 18529622 -130253850 + AT_rich Low_complexity Low_complexity 1 35 0 2953 155 67 8 chr11 18530358 18530849 -130252623 + Tigger7 DNA MER2_type 3 522 -1965 527 148 45 0 chr11 18530848 18530936 -130252536 + Tigger7 DNA MER2_type 2396 2487 0 * 737 225 140 9 chr11 18531001 18531223 -130252249 - MIR SINE MIR -10 252 2 471 284 11 30 chr11 18531458 18531641 -130251831 + MER5A DNA MER1_type 1 178 0 1251 222 26 4 chr11 18531671 18531905 -130251567 - MER8 DNA MER2_type 0 239 1 586 231 66 0 chr11 18532335 18532456 -130251016 - MER5B DNA MER1_type -14 164 36 491 192 121 115 chr11 18532463 18532645 -130250827 + MER5A DNA MER1_type 7 189 0 296 298 138 0 chr11 18532948 18533042 -130250430 + MIR SINE MIR 3 109 -153 221 358 152 6 chr11 18533540 18533705 -130249767 + MIR3 SINE MIR 19 207 -1 43 0 0 0 chr11 18533705 18533748 -130249724 + AT_rich Low_complexity Low_complexity 1 43 0 1866 143 0 14 chr11 18533756 18534049 -130249423 + AluJb SINE Alu 13 301 -11 2178 110 3 7 chr11 18534401 18534710 -130248762 + AluSx SINE Alu 2 309 -3 1610 139 78 48 chr11 18535005 18535299 -130248173 + AluJb SINE Alu 2 304 -8 1995 138 0 7 chr11 18535309 18535607 -130247865 + AluJb SINE Alu 1 296 -16 22 0 0 0 chr11 18535902 18535924 -130247548 + AT_rich Low_complexity Low_complexity 1 22 0 785 261 51 13 chr11 18536319 18536553 -130246919 - MIR SINE MIR 0 262 20 808 136 13 71 chr11 18536554 18536709 -130246763 - FAM SINE Alu -20 165 20 553 266 124 38 chr11 18536770 18537037 -130246435 - L2 LINE L2 0 3313 3024 300 312 111 30 chr11 18537083 18537282 -130246190 - L2 LINE L2 -159 3113 2899 622 216 213 63 chr11 18537590 18537891 -130245581 + L1ME1 LINE L1 2589 2934 -3212 993 87 0 0 chr11 18537897 18538023 -130245449 + AluJb SINE Alu 4 129 -183 332 231 28 37 chr11 18538049 18538157 -130245315 + L1ME1 LINE L1 2946 3052 -3094 3281 201 36 47 chr11 18538162 18538724 -130244748 + L1ME1 LINE L1 4841 5407 -759 2393 112 27 32 chr11 18538724 18539099 -130244373 + THE1C LTR MaLR 3 375 0 3281 201 36 47 chr11 18539099 18539566 -130243906 + L1ME1 LINE L1 5407 6100 -66 1956 143 14 0 chr11 18539566 18539860 -130243612 + AluSx SINE Alu 1 298 -14 3281 201 36 47 chr11 18539860 18539922 -130243550 + L1ME1 LINE L1 6100 6161 -5 200 360 43 50 chr11 18539946 18540107 -130243365 - L2 LINE L2 -556 2758 2599 385 279 54 9 chr11 18540123 18540234 -130243238 + MIR SINE MIR 97 212 -50 4642 150 47 31 chr11 18540878 18541693 -130241779 + MER6 DNA MER2_type 37 864 -1 413 318 121 20 chr11 18542028 18542409 -130241063 - L2 LINE L2 -213 3059 2627 388 253 18 72 chr11 18542430 18542596 -130240876 - MIR SINE MIR -11 251 95 1830 117 20 30 chr11 18542619 18542918 -130240554 - AluJo SINE Alu -16 296 1 810 81 10 0 chr11 18543836 18543935 -130239537 - AluJ/FLAM SINE Alu -210 102 3 592 215 99 36 chr11 18545093 18545208 -130238264 - MER20B DNA MER1_type -50 733 627 2185 49 7 18 chr11 18545208 18545524 -130237948 - AluY SINE Alu 0 313 1 592 215 99 36 chr11 18545524 18545630 -130237842 - MER20B DNA MER1_type -156 627 497 2093 152 3 20 chr11 18545637 18545992 -130237480 - MER65C LTR ERV1 -1 460 112 787 169 0 16 chr11 18545994 18546118 -130237354 - FLAM_C SINE Alu -21 122 1 213 119 0 0 chr11 18546119 18546161 -130237311 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 1882 61 16 8 chr11 18546162 18546407 -130237065 - AluY SINE Alu -26 285 39 21 57 0 0 chr11 18546536 18546571 -130236901 + AT_rich Low_complexity Low_complexity 1 35 0 1831 143 59 0 chr11 18546594 18546881 -130236591 + AluSx SINE Alu 1 304 -8 1837 159 0 14 chr11 18547231 18547542 -130235930 + AluJb SINE Alu 1 307 0 475 266 120 16 chr11 18548189 18548381 -130235091 + MIR SINE MIR 51 262 0 191 203 16 0 chr11 18549063 18549127 -130234345 + CT-rich Low_complexity Low_complexity 3 67 0 1661 189 54 3 chr11 18549129 18549305 -130234167 - AluJo SINE Alu 0 312 113 199 0 65 0 chr11 18549305 18549336 -130234136 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1661 189 54 3 chr11 18549336 18549456 -130234016 - AluJo SINE Alu -199 113 1 356 277 97 15 chr11 18549493 18549688 -130233784 - L1M4 LINE L1 -2610 3536 3326 301 266 80 62 chr11 18549914 18550027 -130233445 - L2 LINE L2 -8 3264 3150 225 316 71 10 chr11 18551330 18551428 -130232044 + MIR SINE MIR 118 221 -41 426 234 15 109 chr11 18551847 18552048 -130231424 - MER5A DNA MER1_type -1 188 7 207 69 0 0 chr11 18552227 18552256 -130231216 + (TC)n Simple_repeat Simple_repeat 2 30 0 2155 114 0 0 chr11 18552256 18552537 -130230935 - AluSx SINE Alu -31 281 1 310 242 233 41 chr11 18552736 18552831 -130230641 + MIR SINE MIR 2 77 -185 375 41 0 0 chr11 18552831 18552880 -130230592 + (TG)n Simple_repeat Simple_repeat 2 50 0 310 242 233 41 chr11 18552880 18553003 -130230469 + MIR SINE MIR 77 262 0 333 0 0 0 chr11 18553625 18553662 -130229810 + (CA)n Simple_repeat Simple_repeat 2 38 0 2745 143 26 5 chr11 18554317 18554736 -130228736 + MSTA LTR MaLR 1 428 0 1571 178 0 43 chr11 18554768 18555071 -130228401 + AluJo SINE Alu 13 302 -10 291 287 21 0 chr11 18555785 18555879 -130227593 + MIR SINE MIR 159 254 -8 2821 123 59 65 chr11 18556042 18556276 -130227196 + MER41C LTR ERV1 1 235 -319 2191 103 0 20 chr11 18556276 18556577 -130226895 + AluSg SINE Alu 1 295 -15 2821 123 59 65 chr11 18556577 18556622 -130226850 + MER41C LTR ERV1 235 279 -275 2196 126 7 0 chr11 18556622 18556932 -130226540 + AluSq SINE Alu 1 312 -1 2821 123 59 65 chr11 18556932 18557145 -130226327 + MER41C LTR ERV1 279 491 -63 10610 36 18 1 chr11 18607145 18609106 -130174366 + L1PA6 LINE L1 4178 6153 -1 12966 28 1 0 chr11 18609482 18610985 -130172487 + L1P LINE L1 3622 5125 -1021 2838 123 58 65 chr11 18611085 18611300 -130172172 - MER41C LTR ERV1 -61 493 278 2152 126 10 0 chr11 18611300 18611609 -130171863 - AluSq SINE Alu -1 312 1 2838 123 58 65 chr11 18611609 18611654 -130171818 - MER41C LTR ERV1 -276 278 234 2191 103 0 20 chr11 18611654 18611955 -130171517 - AluSg SINE Alu -15 295 1 2838 123 58 65 chr11 18611955 18612189 -130171283 - MER41C LTR ERV1 -320 234 1 279 287 21 0 chr11 18612352 18612446 -130171026 - MIR SINE MIR -8 254 159 1571 178 0 43 chr11 18613160 18613463 -130170009 - AluJo SINE Alu -10 302 13 1537 154 39 4 chr11 18613495 18613755 -130169717 - MSTA LTR MaLR 0 428 160 7898 30 5 5 chr11 18613855 18614869 -130168603 + L1PA4 LINE L1 5132 6147 -8 5945 238 11 24 chr11 18614900 18615272 -130168200 + L1 LINE L1 2254 2629 -3517 2046 132 3 3 chr11 18615272 18615583 -130167889 + AluSx SINE Alu 1 311 -1 5945 238 11 24 chr11 18615583 18616835 -130166637 + L1 LINE L1 2629 3857 -2289 199 305 102 23 chr11 18617628 18617756 -130165716 - MIR3 SINE MIR -62 146 9 330 282 83 26 chr11 18618770 18618926 -130164546 - MIR SINE MIR -70 192 28 194 363 12 0 chr11 18619419 18619499 -130163973 + L2 LINE L2 3179 3259 -54 210 329 42 54 chr11 18619507 18619674 -130163798 - MIR3 SINE MIR -37 171 7 341 325 115 24 chr11 18619739 18619991 -130163481 + MLT1J LTR MaLR 7 281 -230 1215 239 39 24 chr11 18620100 18620430 -130163042 + MER2 DNA MER2_type 2 336 -9 915 310 54 35 chr11 18620726 18620911 -130162561 + LTR33 LTR ERVL 31 211 -310 2650 139 31 10 chr11 18620911 18621329 -130162143 - MSTA LTR MaLR -1 427 1 915 310 54 35 chr11 18621329 18621604 -130161868 + LTR33 LTR ERVL 211 500 -21 2678 111 6 0 chr11 18622679 18623041 -130160431 - L1PB1 LINE L1 -2 6149 5786 532 267 9 8 chr11 18623042 18623233 -130160239 - L1PB1 LINE L1 -480 5694 5500 7400 178 10 11 chr11 18623440 18625226 -130158246 - L1P5 LINE L1 -557 5594 3814 1387 228 23 6 chr11 18626615 18626966 -130156506 + L1MB4 LINE L1 5824 6180 0 239 333 0 0 chr11 18627795 18627861 -130155611 + L2 LINE L2 3121 3186 -86 254 274 145 43 chr11 18629099 18629216 -130154256 - L2 LINE L2 -5 3267 3139 7293 214 18 25 chr11 18630575 18632516 -130150956 + L1M2 LINE L1 2504 4522 -2326 4909 52 12 5 chr11 18632622 18633215 -130150257 - L1PA4 LINE L1 -1 6154 5558 14077 75 4 8 chr11 18633215 18635052 -130148420 - L1P LINE L1 -4316 1830 1 10932 199 14 9 chr11 18635052 18637800 -130145672 + L1PB1 LINE L1 2875 5637 -514 2762 109 3 0 chr11 18637818 18638185 -130145287 + L1PB1 LINE L1 5782 6149 -2 792 287 124 38 chr11 18639247 18639505 -130143967 - LTR33 LTR ERVL -10 511 277 2537 153 36 14 chr11 18639505 18639924 -130143548 + MSTA LTR MaLR 1 428 0 792 287 124 38 chr11 18639924 18640108 -130143364 - LTR33 LTR ERVL -244 277 31 232 331 42 54 chr11 18640730 18640896 -130142576 + MIR3 SINE MIR 8 171 -37 282 388 20 10 chr11 18640908 18641006 -130142466 - L2 LINE L2 -40 3232 3134 306 366 57 0 chr11 18641484 18641659 -130141813 + MIR SINE MIR 15 199 -63 1242 231 35 9 chr11 18644849 18645196 -130138276 + L1MB4 LINE L1 5825 6180 0 2043 114 7 17 chr11 18646500 18646537 -130136935 - AluSc SINE Alu -14 295 259 378 0 0 0 chr11 18646537 18646579 -130136893 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 2043 114 7 17 chr11 18646579 18646839 -130136633 - AluSc SINE Alu -50 259 1 244 263 81 124 chr11 18647661 18647870 -130135602 - L2 LINE L2 -5 3267 3068 214 279 18 90 chr11 18649988 18650042 -130133430 + L2 LINE L2 631 675 -2639 2783 98 14 0 chr11 18650042 18650398 -130133074 - THE1B LTR MaLR -3 361 1 214 279 18 90 chr11 18650398 18650454 -130133018 + L2 LINE L2 675 733 -2581 1954 234 99 79 chr11 18650455 18651416 -130132056 - L1MD2 LINE L1 -1 6358 5324 942 302 129 22 chr11 18651416 18652065 -130131407 + L2 LINE L2 1122 1840 -1474 198 0 0 0 chr11 18652213 18652235 -130131237 + (TA)n Simple_repeat Simple_repeat 2 23 0 201 259 0 0 chr11 18652395 18652453 -130131019 + (TA)n Simple_repeat Simple_repeat 2 59 0 2613 84 6 11 chr11 18652488 18653026 -130130446 - L1PA10 LINE L1 -1 6167 5520 2382 112 71 0 chr11 18653621 18653961 -130129511 - THE1B LTR MaLR 0 364 1 962 310 86 7 chr11 18654288 18654720 -130128752 - LTR33 LTR ERVL -16 505 40 1443 217 35 26 chr11 18655025 18655366 -130128106 - MER2 DNA MER2_type 0 344 1 299 300 0 0 chr11 18655568 18655648 -130127824 - MLT1J2 LTR MaLR -302 148 69 213 389 0 0 chr11 18655858 18655948 -130127524 + MIR3 SINE MIR 82 171 -37 1714 176 82 17 chr11 18655957 18656127 -130127345 - THE1C LTR MaLR 0 375 218 213 39 0 0 chr11 18656127 18656153 -130127319 + (GA)n Simple_repeat Simple_repeat 1 26 0 1714 176 82 17 chr11 18656153 18656334 -130127138 - THE1C LTR MaLR -157 218 1 277 289 24 24 chr11 18656336 18656419 -130127053 - L2 LINE L2 -52 3261 3179 259 302 111 35 chr11 18657045 18657217 -130126255 + MIR SINE MIR 15 199 -63 225 314 29 0 chr11 18657834 18657904 -130125568 - L2 LINE L2 0 3313 3242 2536 189 40 7 chr11 18657922 18658366 -130125106 - MER66B LTR ERV1 -27 459 1 712 163 0 24 chr11 18658367 18658490 -130124982 - MER66B LTR ERV1 -366 120 1 243 303 34 11 chr11 18658861 18658950 -130124522 + MIR SINE MIR 98 188 -74 3909 127 25 11 chr11 18660269 18660906 -130122566 + Tigger3(Golem) DNA MER2_type 2380 3025 -4 29 28 0 0 chr11 18661287 18661323 -130122149 + AT_rich Low_complexity Low_complexity 1 36 0 242 268 86 129 chr11 18661426 18661635 -130121837 - L2 LINE L2 -5 3267 3068 208 238 0 125 chr11 18662020 18662100 -130121372 + MIR3 SINE MIR 4 73 -135 1678 35 5 5 chr11 18662872 18663073 -130120399 - L1PA5 LINE L1 -214 5940 5740 1522 63 11 11 chr11 18663073 18663261 -130120211 + L1PA5 LINE L1 5964 6154 0 32115 124 59 10 chr11 18663528 18668384 -130115088 + L1PB1 LINE L1 3 4622 -1529 189 0 0 0 chr11 18668384 18668405 -130115067 + (TAA)n Simple_repeat Simple_repeat 2 22 0 32115 124 59 10 chr11 18668405 18669044 -130114428 + L1PB1 LINE L1 4622 5229 -922 264 30 0 0 chr11 18669044 18669077 -130114395 + (CA)n Simple_repeat Simple_repeat 1 33 0 32115 124 59 10 chr11 18669077 18669437 -130114035 + L1PB1 LINE L1 5229 6151 0 460 224 0 54 chr11 18669437 18669584 -130113888 - L1MA7 LINE L1 -151 6140 6002 * 2185 249 49 51 chr11 18669582 18670054 -130113418 - L1M4 LINE L1 -2203 3943 3472 1997 94 86 0 chr11 18670054 18670321 -130113151 + AluSx SINE Alu 1 290 -22 2185 249 49 51 chr11 18670321 18670747 -130112725 - L1M4 LINE L1 -2674 3472 3047 910 270 32 47 chr11 18670740 18671158 -130112314 - L1M4 LINE L1 -2572 3574 3162 * 2394 57 0 60 chr11 18671158 18671474 -130111998 - AluY SINE Alu -14 297 1 910 270 32 47 chr11 18671474 18671522 -130111950 - L1M4 LINE L1 -2984 3162 3115 3177 211 53 2 chr11 18671523 18672140 -130111332 - MER44D DNA MER2_type 0 605 85 498 152 8 16 chr11 18672152 18672277 -130111195 - L1 LINE L1 -2918 3228 3105 * 5000 161 22 69 chr11 18672273 18673159 -130110313 + L1MA8 LINE L1 5227 6054 -237 2177 127 7 0 chr11 18673159 18673459 -130110013 - AluSx SINE Alu -10 302 1 5000 161 22 69 chr11 18673459 18673665 -130109807 + L1MA8 LINE L1 6054 6268 -23 1275 241 35 5 chr11 18673688 18674058 -130109414 - L1MC/D LINE L1 -542 5817 5437 1638 141 11 11 chr11 18674060 18674330 -130109142 - MLT1B LTR MaLR -120 270 1 2292 91 0 3 chr11 18675945 18676243 -130107229 + AluSq SINE Alu 1 297 -16 1696 113 12 0 chr11 18676245 18676485 -130106987 + AluSq SINE Alu 51 293 -20 209 196 0 0 chr11 18676684 18676730 -130106742 + T-rich Low_complexity Low_complexity 2 47 0 3000 104 97 30 chr11 18677563 18677604 -130105868 + L1PB1 LINE L1 5656 5693 -458 2214 112 3 0 chr11 18677604 18677899 -130105573 - AluSx SINE Alu -16 296 1 3000 104 97 30 chr11 18677899 18678320 -130105152 + L1PB1 LINE L1 5693 6149 -2 771 303 111 20 chr11 18678846 18679305 -130104167 - LTR33 LTR ERVL -10 511 11 319 291 122 30 chr11 18679576 18679813 -130103659 - MLT1J LTR MaLR -110 401 143 2217 108 3 3 chr11 18679895 18680192 -130103280 + AluSx SINE Alu 1 297 -15 204 239 22 22 chr11 18680479 18680525 -130102947 - L2 LINE L2 -46 3226 3181 349 300 9 0 chr11 18681108 18681218 -130102254 + MIR SINE MIR 82 192 -70 1211 134 0 16 chr11 18681549 18681715 -130101757 - AluSg/x SINE Alu -13 299 135 2055 100 21 14 chr11 18681715 18682006 -130101466 - AluSx SINE Alu -19 293 1 1211 134 0 16 chr11 18682006 18682026 -130101446 - AluSg/x SINE Alu -177 135 116 198 233 0 0 chr11 18682026 18682069 -130101403 - MER5B DNA MER1_type -133 45 3 4653 112 148 93 chr11 18682087 18683501 -130099971 - pTR5 LTR ERV1 0 2438 741 2312 73 0 70 chr11 18683608 18683936 -130099536 + AluSp SINE Alu 1 305 -8 571 293 53 0 chr11 18684386 18684574 -130098898 - MIR SINE MIR -64 198 1 2450 55 0 3 chr11 18685111 18685402 -130098070 - AluY SINE Alu -21 290 1 566 184 0 19 chr11 18685923 18686026 -130097446 - AluJ SINE Alu -13 299 199 920 168 0 7 chr11 18686027 18686176 -130097296 - AluJ SINE Alu -164 148 1 5137 149 25 20 chr11 18686889 18687892 -130095580 + L1MB2 LINE L1 5164 6171 0 1999 119 13 51 chr11 18687924 18688235 -130095237 - AluSq SINE Alu -14 299 1 2201 97 3 24 chr11 18688247 18688545 -130094927 - AluSc SINE Alu -17 292 1 201 244 115 26 chr11 18688669 18688747 -130094725 + MIR3 SINE MIR 118 202 -6 934 116 0 51 chr11 18689268 18689406 -130094066 - FLAM_C SINE Alu 0 133 3 581 311 8 79 chr11 18689454 18689695 -130093777 - L2 LINE L2 -49 3223 3000 2349 112 0 0 chr11 18689838 18690142 -130093330 - AluSx SINE Alu -8 304 1 23 0 0 0 chr11 18690164 18690187 -130093285 + AT_rich Low_complexity Low_complexity 1 23 0 696 252 73 32 chr11 18690194 18690412 -130093060 + MIR SINE MIR 23 249 -13 216 0 0 0 chr11 18690474 18690498 -130092974 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 1004 184 31 5 chr11 18690797 18690993 -130092479 - MER3 DNA MER1_type 0 209 9 362 283 128 16 chr11 18691146 18691333 -130092139 + L2 LINE L2 2447 2654 -660 186 43 0 0 chr11 18691984 18692007 -130091465 + (A)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr11 18692689 18692712 -130090760 + AT_rich Low_complexity Low_complexity 1 23 0 1668 174 26 22 chr11 18693104 18693415 -130090057 + AluJb SINE Alu 1 312 0 262 261 278 0 chr11 18693646 18693761 -130089711 + L1MEd LINE L1 19 165 -5954 195 129 0 0 chr11 18693762 18693793 -130089679 + (GA)n Simple_repeat Simple_repeat 2 32 0 571 198 21 0 chr11 18693810 18693906 -130089566 + FAM SINE Alu 44 141 -44 203 346 22 52 chr11 18694932 18695068 -130088404 - L2 LINE L2 -3 3310 3179 452 207 71 57 chr11 18695326 18695466 -130088006 - MARNA DNA Mariner -222 364 223 550 136 102 0 chr11 18695487 18695575 -130087897 - FRAM SINE Alu -10 166 70 216 0 0 0 chr11 18695576 18695600 -130087872 + (TG)n Simple_repeat Simple_repeat 1 24 0 183 129 0 0 chr11 18695768 18695799 -130087673 + (TG)n Simple_repeat Simple_repeat 2 32 0 239 150 0 83 chr11 18695824 18695884 -130087588 - AluJo SINE Alu -163 139 85 235 298 79 35 chr11 18695897 18696011 -130087461 - MARNA DNA Mariner -392 194 76 907 241 109 53 chr11 18696784 18697196 -130086276 + MLT1J2 LTR MaLR 1 435 -11 459 284 45 0 chr11 18697199 18697333 -130086139 + MIR SINE MIR 107 246 -16 1677 177 10 7 chr11 18697481 18697775 -130085697 + AluJo SINE Alu 1 295 -17 1992 136 34 0 chr11 18697778 18698073 -130085399 + AluSx SINE Alu 1 305 -7 1630 155 86 31 chr11 18699046 18699336 -130084136 - AluJo SINE Alu -6 306 1 857 88 0 9 chr11 18699875 18699988 -130083484 - AluSg/x SINE Alu -23 287 176 2074 109 44 14 chr11 18700008 18700301 -130083171 - AluY SINE Alu -9 302 1 241 223 32 75 chr11 18701249 18701343 -130082129 - MIR SINE MIR -87 121 32 1410 108 61 0 chr11 18701579 18701792 -130081680 + MER30 DNA MER1_type 5 230 0 2367 89 0 16 chr11 18704638 18704951 -130078521 + AluSq SINE Alu 1 308 -5 2049 105 11 11 chr11 18705051 18705337 -130078135 + AluSx SINE Alu 1 286 -26 30 0 0 0 chr11 18705337 18705367 -130078105 + AT_rich Low_complexity Low_complexity 1 30 0 2651 119 26 50 chr11 18706793 18707256 -130076216 + L1MA5A LINE L1 5846 6297 0 2240 84 3 53 chr11 18707365 18707685 -130075787 + AluSx SINE Alu 3 306 -6 2283 106 10 6 chr11 18708138 18708449 -130075023 + AluSx SINE Alu 1 312 0 383 333 56 47 chr11 18708668 18708881 -130074591 - MIR SINE MIR -28 234 20 269 318 0 0 chr11 18708935 18709045 -130074427 + C-rich Low_complexity Low_complexity 1 110 0 280 344 54 11 chr11 18709177 18709363 -130074109 + L2 LINE L2 1859 2052 -1262 1896 112 4 8 chr11 18710795 18711063 -130072409 + AluSx SINE Alu 34 300 -12 501 246 75 40 chr11 18711100 18711299 -130072173 - L2 LINE L2 -6 3307 3102 2226 98 17 0 chr11 18711408 18711704 -130071768 - AluSp SINE Alu -12 301 1 1195 107 51 0 chr11 18712798 18712975 -130070497 - L1MC/D LINE L1 -715 5618 5433 216 0 0 0 chr11 18712976 18713000 -130070472 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2034 102 11 14 chr11 18713003 18713288 -130070184 - AluY SINE Alu -27 284 1 274 370 79 0 chr11 18713768 18713895 -130069577 + MIR3 SINE MIR 51 187 -21 227 128 21 21 chr11 18714118 18714165 -130069307 + MIR SINE MIR 180 226 -36 234 357 105 38 chr11 18714265 18714475 -130068997 + L2 LINE L2 3030 3253 -19 208 139 0 0 chr11 18714986 18715022 -130068450 + (A)n Simple_repeat Simple_repeat 1 36 0 2097 144 0 3 chr11 18715789 18716102 -130067370 + AluJb SINE Alu 1 312 0 269 237 34 0 chr11 18716118 18716177 -130067295 + L3 LINE CR1 1514 1574 -3 881 215 0 0 chr11 18716617 18716766 -130066706 + FRAM SINE Alu 1 146 -30 1852 166 0 7 chr11 18716975 18717277 -130066195 + AluJb SINE Alu 1 300 -12 636 197 8 34 chr11 18718460 18718577 -130064895 + MER81 DNA DNA 1 114 0 2366 90 0 0 chr11 18718768 18719067 -130064405 - AluSx SINE Alu -13 299 1 1670 159 48 3 chr11 18720476 18720766 -130062706 + LTR23 LTR ERV1 2 304 -133 451 179 253 0 chr11 18720766 18720861 -130062611 + FLAM_C SINE Alu 1 119 -14 2352 95 0 0 chr11 18720890 18721184 -130062288 + AluSc SINE Alu 1 294 -15 1390 131 20 121 chr11 18721184 18721490 -130061982 + AluJo SINE Alu 1 275 -37 1028 128 0 0 chr11 18721532 18721673 -130061799 + AluSx SINE Alu 30 170 -142 232 314 29 0 chr11 18722139 18722209 -130061263 - L2 LINE L2 0 3272 3201 241 320 80 16 chr11 18722528 18722653 -130060819 + MIR SINE MIR 21 153 -109 24 0 0 0 chr11 18723122 18723146 -130060326 + AT_rich Low_complexity Low_complexity 1 24 0 2233 117 51 31 chr11 18723919 18724270 -130059202 + THE1B LTR MaLR 1 358 -6 1613 178 7 46 chr11 18724308 18724611 -130058861 + AluJo SINE Alu 1 291 -21 21 0 0 0 chr11 18724611 18724632 -130058840 + AT_rich Low_complexity Low_complexity 1 21 0 997 92 15 0 chr11 18725182 18725313 -130058159 - AluSq/x SINE Alu -179 133 1 190 114 0 29 chr11 18725611 18725646 -130057826 + L2 LINE L2 671 704 -2610 2808 224 43 65 chr11 18725689 18726232 -130057240 - L1MD2 LINE L1 -13 6346 5793 2652 55 0 0 chr11 18726232 18726539 -130056933 - AluY SINE Alu -4 307 1 2808 224 43 65 chr11 18726539 18726662 -130056810 - L1MD2 LINE L1 -566 5793 5669 2358 118 8 30 chr11 18726662 18727034 -130056438 - THE1B LTR MaLR 0 364 1 12356 81 3 1 chr11 18727034 18728610 -130054862 - THE1B-int LTR MaLR 0 1580 1 2388 124 8 24 chr11 18728610 18728980 -130054492 - THE1B LTR MaLR 0 364 1 2808 224 43 65 chr11 18728980 18729240 -130054232 - L1MD2 LINE L1 -687 5672 5437 1389 175 34 8 chr11 18729242 18729505 -130053967 - MLT1B LTR MaLR -120 270 1 27 49 0 0 chr11 18729536 18729577 -130053895 + AT_rich Low_complexity Low_complexity 1 41 0 7326 169 13 171 chr11 18729817 18732276 -130051196 + L1M2 LINE L1 1 2847 -4002 240 35 0 0 chr11 18732276 18732305 -130051167 + (GGGAA)n Simple_repeat Simple_repeat 4 32 0 2108 76 0 0 chr11 18732305 18732569 -130050903 + AluY SINE Alu 44 307 -4 5522 198 45 27 chr11 18732590 18733556 -130049916 + L1M2 LINE L1 2931 3929 -2919 1705 158 10 24 chr11 18733556 18733848 -130049624 + AluJb SINE Alu 3 290 -22 5522 198 45 27 chr11 18733848 18734246 -130049226 + L1M2 LINE L1 3929 4319 -2529 1917 222 77 10 chr11 18734241 18734319 -130049153 + L1M1 LINE L1 15 86 -7479 * 204 40 0 0 chr11 18734319 18734344 -130049128 + (CA)n Simple_repeat Simple_repeat 2 26 0 1917 222 77 10 chr11 18734344 18734747 -130048725 + L1M1 LINE L1 86 528 -7037 2432 148 35 33 chr11 18734747 18735259 -130048213 + MLT2A2 LTR ERVL 1 510 -5 232 253 32 63 chr11 18735622 18735717 -130047755 - MIR3 SINE MIR -14 194 103 24 32 0 0 chr11 18738895 18738926 -130044546 + AT_rich Low_complexity Low_complexity 1 31 0 2491 74 0 0 chr11 18738926 18739225 -130044247 + AluY SINE Alu 1 299 -12 2178 120 13 3 chr11 18739482 18739782 -130043690 + AluSx SINE Alu 1 303 -9 18253 164 16 22 chr11 18741129 18743008 -130040464 + L1M1 LINE L1 524 2413 -5152 1524 183 95 0 chr11 18743008 18743271 -130040201 + AluSx SINE Alu 1 288 -24 18253 164 16 22 chr11 18743271 18743558 -130039914 + L1M1 LINE L1 2413 2700 -4865 1111 209 153 4 chr11 18743558 18743807 -130039665 + AluJb SINE Alu 3 288 -14 18253 164 16 22 chr11 18743807 18744422 -130039050 + L1M1 LINE L1 2700 3317 -4248 185 0 40 0 chr11 18744422 18744447 -130039025 + (TTG)n Simple_repeat Simple_repeat 2 27 0 18253 164 16 22 chr11 18744447 18746845 -130036627 + L1M1 LINE L1 3317 5671 -1894 7332 198 111 18 chr11 18746845 18748425 -130035047 - MER52A LTR ERV1 -29 1726 1 231 307 109 15 chr11 18748427 18748564 -130034908 - L1P3 LINE L1 -523 5649 5500 246 62 0 0 chr11 18748714 18748746 -130034726 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1777 124 37 44 chr11 18748779 18749077 -130034395 + AluJb SINE Alu 3 298 -14 508 118 59 6 chr11 18749388 18749557 -130033915 + (TG)n Simple_repeat Simple_repeat 2 179 0 659 95 63 0 chr11 18749582 18749740 -130033732 + (TG)n Simple_repeat Simple_repeat 2 169 0 234 150 0 0 chr11 18749798 18749838 -130033634 + (GA)n Simple_repeat Simple_repeat 2 41 0 22 56 0 0 chr11 18749840 18749876 -130033596 + AT_rich Low_complexity Low_complexity 1 36 0 284 260 91 87 chr11 18750010 18750264 -130033208 - L1ME4a LINE L1 -25 6096 5842 471 285 8 0 chr11 18750447 18750577 -130032895 + L2 LINE L2 3183 3313 0 3799 190 4 31 chr11 18751314 18751501 -130031971 - L1P3 LINE L1 -973 5173 4982 1865 147 45 3 chr11 18751501 18751793 -130031679 - AluSx SINE Alu -8 304 1 3799 190 4 31 chr11 18751793 18752411 -130031061 - L1P3 LINE L1 -1164 4982 4390 * 5483 111 71 19 chr11 18752403 18752692 -130030780 + L1PA16 LINE L1 5179 5451 -715 1837 183 0 16 chr11 18752692 18753009 -130030463 + AluJo SINE Alu 1 312 0 5483 111 71 19 chr11 18753009 18753653 -130029819 + L1PA16 LINE L1 5451 6156 -10 2123 93 4 4 chr11 18754522 18754840 -130028632 + AluSc SINE Alu 1 318 0 1386 308 88 31 chr11 18754841 18755717 -130027755 - L2 LINE L2 -673 2641 1716 243 288 68 0 chr11 18755750 18755823 -130027649 - L2 LINE L2 -27 3245 3168 294 293 9 52 chr11 18755943 18756059 -130027413 + MIR SINE MIR 25 135 -127 1710 140 80 0 chr11 18756317 18756603 -130026869 + AluSx SINE Alu 1 309 -3 2163 132 3 0 chr11 18756709 18757019 -130026453 + AluSx SINE Alu 1 311 -1 1857 172 3 3 chr11 18757092 18757382 -130026090 - AluJo SINE Alu -22 290 1 236 206 95 16 chr11 18757880 18757943 -130025529 - L2 LINE L2 -4 3268 3201 1946 144 7 7 chr11 18758404 18758709 -130024763 - AluJo SINE Alu -7 305 1 237 330 0 10 chr11 18759784 18759887 -130023585 + MIR SINE MIR 120 221 -41 2372 226 45 44 chr11 18759939 18760049 -130023423 + L1ME3 LINE L1 5434 5542 -620 1765 171 0 13 chr11 18760049 18760354 -130023118 - AluJo SINE Alu -11 301 1 2372 226 45 44 chr11 18760354 18760969 -130022503 + L1ME3 LINE L1 5542 6160 -2 295 321 48 37 chr11 18761378 18761565 -130021907 - MER5A DNA MER1_type 0 189 1 303 66 16 49 chr11 18762356 18762417 -130021055 + (TTTC)n Simple_repeat Simple_repeat 1 59 0 1411 182 72 45 chr11 18762422 18762713 -130020759 - AluJo SINE Alu -8 304 6 1521 257 53 42 chr11 18763714 18764008 -130019464 - L1MC4a LINE L1 -1903 5905 5616 2054 147 0 0 chr11 18764008 18764308 -130019164 - AluSx SINE Alu -12 300 1 1521 257 53 42 chr11 18764308 18764652 -130018820 - L1MC4a LINE L1 -2192 5616 5260 3368 65 11 23 chr11 18764870 18765343 -130018129 - L1MA2 LINE L1 0 6304 5838 270 298 69 53 chr11 18765504 18765692 -130017780 - L1MC4a LINE L1 -1209 4937 4747 535 285 141 9 chr11 18765847 18766187 -130017285 + L2 LINE L2 1820 2204 -1110 1301 249 59 23 chr11 18766266 18766749 -130016723 - LTR48B LTR ERV1 0 644 115 372 288 108 0 chr11 18766721 18766832 -130016640 - MER34 LTR ERV1 -419 123 1 * 5289 146 23 37 chr11 18766862 18768266 -130015206 + L1PB4 LINE L1 4770 6152 -4 1713 195 141 37 chr11 18768447 18768909 -130014563 - MLT2B1 LTR ERVL -2 518 9 1911 171 0 3 chr11 18768919 18769223 -130014249 + AluJb SINE Alu 1 303 -9 698 254 16 5 chr11 18770171 18770356 -130013116 + LTR41 LTR ERVL 1 187 -586 250 290 7 0 chr11 18770545 18770615 -130012857 - MLT1C LTR MaLR -301 73 1 405 162 29 48 chr11 18770872 18770977 -130012495 + LTR41 LTR ERVL 665 767 -6 2034 130 3 3 chr11 18772882 18773174 -130010298 - AluSx SINE Alu -7 305 14 443 253 110 14 chr11 18773174 18773320 -130010152 + MER5B DNA MER1_type 16 175 -3 342 278 105 37 chr11 18773359 18773521 -130009951 + MIR SINE MIR 20 192 -70 733 154 8 0 chr11 18774740 18774857 -130008615 - 5S rRNA rRNA 0 121 4 1451 211 0 10 chr11 18775455 18775754 -130007718 + AluJo SINE Alu 7 302 -10 237 108 0 0 chr11 18776011 18776048 -130007424 + (TTCC)n Simple_repeat Simple_repeat 4 40 0 793 197 8 8 chr11 18776060 18776319 -130007153 + CT-rich Low_complexity Low_complexity 1 259 0 751 96 32 0 chr11 18776440 18776565 -130006907 + C-rich Low_complexity Low_complexity 4 132 0 1436 208 11 4 chr11 18776566 18776845 -130006627 - AluJb SINE Alu -31 281 1 1033 266 77 27 chr11 18776846 18777211 -130006261 - L2 LINE L2 -1880 1434 1052 255 316 9 61 chr11 18777518 18777632 -130005840 + L2 LINE L2 3165 3272 0 1103 301 79 7 chr11 18779435 18779853 -130003619 + L2 LINE L2 2530 2977 -337 315 313 40 13 chr11 18779899 18780049 -130003423 - L2 LINE L2 -2592 722 569 1805 149 10 3 chr11 18780112 18780408 -130003064 + AluJo SINE Alu 1 298 -14 205 241 336 26 chr11 18781486 18781602 -130001870 - MIR3 SINE MIR -54 154 3 21 0 0 0 chr11 18782523 18782544 -130000928 + AT_rich Low_complexity Low_complexity 1 21 0 2529 45 0 3 chr11 18782715 18783026 -130000446 - AluY SINE Alu -1 310 1 1828 91 4 4 chr11 18783439 18783692 -129999780 + AluSq SINE Alu 50 302 -11 601 209 0 8 chr11 18784744 18784878 -129998594 - AluY SINE Alu -13 298 166 583 148 0 30 chr11 18784999 18785110 -129998362 - MER5A DNA MER1_type -79 110 4 343 322 40 7 chr11 18786506 18786655 -129996817 + LTR16C LTR ERVL 336 489 -2 604 159 28 19 chr11 18787028 18787135 -129996337 + ERVL LTR ERVL 4510 4617 -1147 265 311 14 0 chr11 18787180 18787254 -129996218 + MIR SINE MIR 25 99 -163 35 24 0 0 chr11 18787905 18787947 -129995525 + AT_rich Low_complexity Low_complexity 1 42 0 2327 75 3 3 chr11 18789839 18790145 -129993327 - AluSg SINE Alu 0 310 5 411 221 93 76 chr11 18790286 18790311 -129993161 + MER5B DNA MER1_type 1 24 -154 1855 129 3 3 chr11 18790311 18790598 -129992874 - AluSx SINE Alu -12 300 14 411 221 93 76 chr11 18790598 18790744 -129992728 + MER5B DNA MER1_type 24 175 -3 241 237 61 53 chr11 18790783 18790897 -129992575 + MIR SINE MIR 20 134 -128 733 154 8 0 chr11 18792187 18792304 -129991168 - 5S rRNA rRNA 0 121 4 683 202 25 0 chr11 18793459 18793578 -129989894 + FLAM_A SINE Alu 1 122 -11 448 318 11 6 chr11 18793915 18794094 -129989378 + L1M4 LINE L1 3773 3952 -2194 489 271 53 0 chr11 18794162 18794295 -129989177 + Charlie1 DNA MER1_type 1 140 -2621 * 2296 195 55 2 chr11 18794292 18794819 -129988653 + Charlie1 DNA MER1_type 2207 2761 0 1803 156 0 3 chr11 18794895 18795190 -129988282 + AluSx SINE Alu 4 297 -15 413 263 58 49 chr11 18795191 18795441 -129988031 + L1M4 LINE L1 4081 4339 -1807 237 194 14 28 chr11 18795593 18795665 -129987807 + L1M4 LINE L1 4549 4619 -1527 800 172 0 6 chr11 18795682 18795862 -129987610 + CT-rich Low_complexity Low_complexity 1 179 0 1269 207 3 24 chr11 18795862 18796181 -129987291 - AluJb SINE Alu 0 313 1 2120 113 3 0 chr11 18796229 18796529 -129986943 + AluSp SINE Alu 1 301 -12 243 173 0 0 chr11 18796583 18796635 -129986837 + (TA)n Simple_repeat Simple_repeat 2 53 0 2254 78 3 0 chr11 18796636 18796931 -129986541 - AluSq SINE Alu -17 296 1 4704 151 96 21 chr11 18796931 18797779 -129985693 + MER21A LTR ERV1 15 925 -6 2673 202 31 4 chr11 18798566 18799105 -129984367 + MER74A LTR ERVL 1 554 -4 1849 146 0 7 chr11 18799119 18799400 -129984072 - AluJo SINE Alu -31 281 3 375 292 22 0 chr11 18799484 18799573 -129983899 + L1MC4 LINE L1 6614 6704 -1338 885 189 0 6 chr11 18799581 18799750 -129983722 + AluJb SINE Alu 143 310 -2 649 140 0 10 chr11 18800011 18800111 -129983361 + AluY SINE Alu 2 100 -211 1440 215 102 48 chr11 18800555 18800997 -129982475 - MER31B LTR ERV1 0 466 1 261 312 64 6 chr11 18801882 18802039 -129981433 - L1ME LINE L1 -230 5891 5726 1665 154 4 0 chr11 18802842 18803101 -129980371 - AluSx SINE Alu -52 260 1 350 188 23 62 chr11 18803126 18803254 -129980218 - L1MC5 LINE L1 -476 7485 7363 1890 108 4 0 chr11 18803965 18804224 -129979248 - AluSx SINE Alu -52 260 1 1841 101 0 0 chr11 18804329 18804576 -129978896 - AluSx SINE Alu -65 247 1 212 0 36 0 chr11 18804717 18804745 -129978727 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 333 47 0 0 chr11 18804801 18804844 -129978628 + (TG)n Simple_repeat Simple_repeat 2 44 0 211 328 45 0 chr11 18805038 18805105 -129978367 + L2 LINE L2 2985 3054 -218 193 268 152 9 chr11 18805199 18805311 -129978161 + L2 LINE L2 3167 3294 -19 342 145 0 16 chr11 18805622 18805684 -129977788 + FLAM SINE Alu 71 131 -2 189 0 0 0 chr11 18806046 18806067 -129977405 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 811 172 6 50 chr11 18806073 18806253 -129977219 - AluJo SINE Alu -23 289 118 586 194 0 0 chr11 18807000 18807098 -129976374 - FLAM_A SINE Alu -33 109 12 2563 33 0 3 chr11 18807118 18807425 -129976047 + AluY SINE Alu 1 306 -5 225 335 38 16 chr11 18808762 18808947 -129974525 - L1 LINE L1 -1076 5070 4882 257 221 91 13 chr11 18808997 18809074 -129974398 + L1M1 LINE L1 5380 5462 -843 255 210 80 50 chr11 18809074 18809174 -129974298 - L1 LINE L1 -1321 4825 4723 27 29 0 0 chr11 18809630 18809664 -129973808 + AT_rich Low_complexity Low_complexity 1 34 0 827 193 60 0 chr11 18809832 18809982 -129973490 - AluJb SINE Alu -17 295 137 685 259 47 42 chr11 18810017 18810229 -129973243 - MIR SINE MIR -38 224 12 482 211 165 9 chr11 18812080 18812189 -129971283 - L2 LINE L2 0 3313 3188 425 317 150 33 chr11 18812586 18812886 -129970586 - L2 LINE L2 -1198 2116 1782 360 311 185 26 chr11 18812910 18813251 -129970221 - L2 LINE L2 0 3313 2919 2370 43 0 0 chr11 18813378 18813658 -129969814 + LTR5 LTR ERVK 1 280 -689 217 240 192 27 chr11 18814357 18814503 -129968969 + L2 LINE L2 2328 2497 -817 635 165 0 0 chr11 18815001 18815092 -129968380 - AluS SINE Alu -220 92 2 184 240 0 130 chr11 18815377 18815477 -129967995 + MIR SINE MIR 121 207 -55 206 222 111 0 chr11 18815827 18815881 -129967591 + L2 LINE L2 3244 3303 -10 22 0 0 0 chr11 18816325 18816347 -129967125 + AT_rich Low_complexity Low_complexity 1 22 0 248 182 80 147 chr11 18816400 18816625 -129966847 + L1ME4a LINE L1 5812 6021 -100 503 283 36 14 chr11 18817165 18817459 -129966013 + L1MC5 LINE L1 7230 7415 -393 32 0 0 0 chr11 18817515 18817547 -129965925 + AT_rich Low_complexity Low_complexity 1 32 0 286 204 83 46 chr11 18817657 18817765 -129965707 + L1MC4 LINE L1 7911 8022 -20 805 154 23 8 chr11 18818276 18818406 -129965066 - AluJb SINE Alu -179 133 2 2031 126 0 7 chr11 18819783 18820093 -129963379 - AluSx SINE Alu -4 308 1 667 224 20 27 chr11 18820186 18820333 -129963139 - MER45A DNA AcHobo -23 155 10 180 0 0 0 chr11 18822221 18822241 -129961231 + (TG)n Simple_repeat Simple_repeat 2 21 0 670 223 60 49 chr11 18822253 18822437 -129961035 + MER20 DNA MER1_type 4 189 -30 2283 79 3 0 chr11 18822853 18823143 -129960329 - AluSp SINE Alu -21 292 2 1604 162 7 32 chr11 18823173 18823481 -129959991 + AluJb SINE Alu 1 300 -12 3111 116 27 5 chr11 18823824 18824262 -129959210 + MER83 LTR ERV1 1 448 0 556 301 6 0 chr11 18824369 18824545 -129958927 - L1ME2 LINE L1 0 6164 5988 339 282 155 35 chr11 18824718 18824892 -129958580 - MIR SINE MIR -34 228 34 1325 176 57 0 chr11 18825054 18825298 -129958174 + MER58B DNA MER1_type 56 313 -28 200 299 0 0 chr11 18825316 18825383 -129958089 + MER5A DNA MER1_type 4 70 -119 180 371 52 0 chr11 18826584 18826681 -129956791 - MER5A DNA MER1_type -81 108 7 1662 81 0 0 chr11 18827811 18828022 -129955450 - AluSq SINE Alu -15 298 88 1550 108 10 0 chr11 18828511 18828715 -129954757 - AluSq SINE Alu -106 207 2 6232 116 7 60 chr11 18828716 18830712 -129952760 - L1P3 LINE L1 -665 5489 3830 290 153 17 0 chr11 18831700 18831759 -129951713 + (CA)n Simple_repeat Simple_repeat 1 60 0 26 50 0 0 chr11 18832750 18832790 -129950682 + AT_rich Low_complexity Low_complexity 1 40 0 1994 109 3 40 chr11 18832790 18833093 -129950379 - AluSx SINE Alu -20 292 1 358 279 96 29 chr11 18834056 18834264 -129949208 - L1ME4a LINE L1 -102 6019 5798 2183 107 0 10 chr11 18834370 18834684 -129948788 - AluSx SINE Alu 0 312 1 282 335 187 62 chr11 18834986 18835048 -129948424 - L2 LINE L2 -25 3247 3194 1922 139 24 14 chr11 18835048 18835343 -129948129 - AluSx SINE Alu -10 302 5 282 335 187 62 chr11 18835343 18835537 -129947935 - L2 LINE L2 -78 3194 2959 218 196 59 0 chr11 18835962 18836013 -129947459 + L2 LINE L2 3256 3309 -4 31 26 0 0 chr11 18836509 18836547 -129946925 + AT_rich Low_complexity Low_complexity 1 38 0 878 231 6 33 chr11 18836561 18836743 -129946729 + AluJo SINE Alu 2 178 -134 413 181 39 71 chr11 18837509 18837755 -129945717 + MER2 DNA MER2_type 66 345 0 1646 161 9 63 chr11 18837824 18838140 -129945332 - AluSx SINE Alu -13 299 1 2117 126 14 0 chr11 18838236 18838529 -129944943 + AluSx SINE Alu 1 297 -15 2248 67 21 3 chr11 18838967 18839250 -129944222 - AluY SINE Alu -23 288 1 971 147 0 0 chr11 18839252 18839388 -129944084 - AluSq/x SINE Alu -177 136 1 248 328 0 0 chr11 18839493 18839557 -129943915 + L1ME4a LINE L1 5549 5612 -2196 719 186 0 57 chr11 18839559 18839699 -129943773 + FLAM_C SINE Alu 2 133 -10 480 243 32 72 chr11 18839768 18840006 -129943466 + L1ME4a LINE L1 5699 5929 -192 343 253 8 13 chr11 18840756 18840845 -129942627 + MIR SINE MIR 11 103 -105 235 191 38 95 chr11 18841182 18841287 -129942185 - L1MC5 LINE L1 -34 7927 7829 1183 313 108 24 chr11 18841397 18842036 -129941436 + L3 LINE CR1 878 1570 -7 1040 96 0 15 chr11 18893137 18893272 -129890200 + FLAM_C SINE Alu 1 133 0 22 35 0 0 chr11 18893352 18893381 -129890091 + AT_rich Low_complexity Low_complexity 1 29 0 258 32 0 0 chr11 18894885 18894916 -129888556 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 1621 181 18 7 chr11 18894917 18895193 -129888279 - AluJo SINE Alu -33 279 1 748 263 92 24 chr11 18895213 18895548 -129887924 - L1M4 LINE L1 -1984 4162 3805 2371 98 3 0 chr11 18895564 18895869 -129887603 - AluSg SINE Alu -2 308 3 2266 100 7 7 chr11 18895881 18896181 -129887291 - AluSc SINE Alu -9 300 1 22 0 0 0 chr11 18896191 18896213 -129887259 + AT_rich Low_complexity Low_complexity 1 22 0 668 168 37 0 chr11 18896214 18896321 -129887151 + FLAM_C SINE Alu 2 112 -31 2290 91 3 13 chr11 18896470 18896777 -129886695 + AluSg SINE Alu 1 304 -6 1501 164 31 72 chr11 18896780 18897098 -129886374 + AluJb SINE Alu 1 305 -7 2135 99 0 63 chr11 18897117 18897258 -129886214 + AluSx SINE Alu 1 149 -163 2491 46 0 0 chr11 18897258 18897577 -129885895 + AluY SINE Alu 1 319 0 2135 99 0 63 chr11 18897577 18897766 -129885706 + AluSx SINE Alu 149 311 -1 2800 103 78 5 chr11 18898017 18898416 -129885056 + MSTC LTR MaLR 1 428 0 238 325 111 26 chr11 18898417 18898534 -129884938 - L2 LINE L2 -3 3269 3143 214 235 160 50 chr11 18898567 18898686 -129884786 - L3 LINE CR1 -108 1469 1338 307 284 300 21 chr11 18899218 18899335 -129884137 - MIR SINE MIR -17 245 162 2377 104 0 0 chr11 18899335 18899633 -129883839 + AluSp SINE Alu 1 298 -15 307 284 300 21 chr11 18899633 18899705 -129883767 - MIR SINE MIR -100 162 3 531 217 9 35 chr11 18899868 18900029 -129883443 - FLAM_A SINE Alu 0 161 4 1754 148 36 0 chr11 18900040 18900318 -129883154 - AluSx SINE Alu -18 294 7 32 0 0 0 chr11 18900328 18900360 -129883112 + AT_rich Low_complexity Low_complexity 1 32 0 2322 107 37 11 chr11 18900718 18901073 -129882399 - L1PA16 LINE L1 -1 6165 5802 1960 146 7 3 chr11 18901272 18901573 -129881899 + AluJb SINE Alu 1 302 -10 492 271 59 52 chr11 18901738 18902026 -129881446 - L2 LINE L2 -759 2555 2266 501 111 53 213 chr11 18902401 18902478 -129880994 - L1M4 LINE L1 -1383 4763 4675 2147 112 11 0 chr11 18902478 18902765 -129880707 + AluSx SINE Alu 1 290 -22 501 111 53 213 chr11 18902765 18902783 -129880689 - L1M4 LINE L1 -1471 4675 4656 1116 133 0 0 chr11 18902783 18902963 -129880509 + (TA)n Simple_repeat Simple_repeat 1 180 0 501 111 53 213 chr11 18902963 18903073 -129880399 - L1M4 LINE L1 -1490 4656 4590 * 887 235 76 41 chr11 18903053 18903237 -129880235 - L1M4c LINE L1 -4832 1552 1349 2204 118 0 3 chr11 18903237 18903541 -129879931 - AluSx SINE Alu -9 303 1 887 235 76 41 chr11 18903541 18903697 -129879775 - L1M4c LINE L1 -5035 1349 1200 207 0 0 0 chr11 18904733 18904756 -129878716 + (CAAAAA)n Simple_repeat Simple_repeat 3 25 0 2107 118 14 0 chr11 18904832 18905119 -129878353 - AluSx SINE Alu -14 298 8 2356 95 0 0 chr11 18905592 18905888 -129877584 - AluSx SINE Alu -16 296 1 1476 141 0 0 chr11 18906112 18906325 -129877147 - AluSg/x SINE Alu -13 297 85 2122 96 48 21 chr11 18906325 18906660 -129876812 - L1PBa LINE L1 -4336 2527 2184 474 139 0 0 chr11 18906760 18906832 -129876640 + AluSp/q SINE Alu 227 298 -15 643 111 89 0 chr11 18906835 18906925 -129876547 - FLAM_A SINE Alu -26 116 19 2012 139 7 3 chr11 18906987 18907281 -129876191 + AluSx SINE Alu 3 297 -15 2079 119 10 3 chr11 18907417 18907712 -129875760 + AluSx SINE Alu 1 297 -15 1667 161 65 0 chr11 18907851 18908142 -129875330 + AluJb SINE Alu 1 310 -2 1341 116 0 6 chr11 18908186 18908367 -129875105 + AluSx SINE Alu 1 180 -132 426 194 111 21 chr11 18908372 18908516 -129874956 + L1ME3A LINE L1 4496 4652 -1494 1155 269 129 26 chr11 18908681 18909246 -129874226 + L1ME3A LINE L1 4960 5648 -522 2429 74 3 0 chr11 18909246 18909542 -129873930 + AluSg SINE Alu 1 297 -13 1155 269 129 26 chr11 18909542 18909843 -129873629 + L1ME3A LINE L1 5648 5917 -253 2037 99 0 0 chr11 18909870 18910132 -129873340 + AluSx SINE Alu 2 263 -49 2242 94 10 3 chr11 18910273 18910570 -129872902 + AluSx SINE Alu 1 299 -13 1492 174 0 4 chr11 18911390 18911626 -129871846 + AluJo SINE Alu 1 235 -77 2234 122 3 0 chr11 18911680 18911991 -129871481 + AluSx SINE Alu 1 312 0 3408 231 81 43 chr11 18912002 18912300 -129871172 - L2 LINE L2 -36 3277 2992 1639 154 18 28 chr11 18912300 18912586 -129870886 + AluJo SINE Alu 14 296 -16 3408 231 81 43 chr11 18912586 18913504 -129869968 - L2 LINE L2 -321 2992 2110 1688 178 13 16 chr11 18913504 18913813 -129869659 + AluJb SINE Alu 1 308 -4 1935 174 13 0 chr11 18913819 18914124 -129869348 + AluJb SINE Alu 1 309 -3 3408 231 81 43 chr11 18914124 18914299 -129869173 - L2 LINE L2 -1207 2106 1829 248 250 46 56 chr11 18914306 18914414 -129869058 + L1MC5 LINE L1 7200 7306 -655 1614 94 9 0 chr11 18914435 18914648 -129868824 - AluSg/x SINE Alu -12 298 84 2427 77 0 7 chr11 18914758 18915068 -129868404 + AluY SINE Alu 4 311 0 599 200 0 18 chr11 18915159 18915269 -129868203 - FAM SINE Alu -67 118 11 2302 103 0 0 chr11 18915342 18915642 -129867830 + AluSx SINE Alu 1 300 -12 208 258 101 34 chr11 18916065 18916154 -129867318 - MIR SINE MIR -2 260 166 2043 126 0 0 chr11 18916173 18916458 -129867014 + AluSg1 SINE Alu 1 285 -24 730 254 106 30 chr11 18916592 18916891 -129866581 + L1MEd LINE L1 623 898 -5412 1923 144 3 7 chr11 18916891 18917200 -129866272 + AluSx SINE Alu 1 308 0 730 254 106 30 chr11 18917200 18917647 -129865825 + L1MEd LINE L1 898 1555 -4755 459 153 153 0 chr11 18917662 18917747 -129865725 + FLAM_A SINE Alu 43 140 -2 257 291 73 45 chr11 18917755 18917934 -129865538 + L1MEd LINE L1 1555 1738 -4572 2071 122 3 25 chr11 18918117 18918436 -129865036 - AluSx SINE Alu 0 312 1 1079 86 0 0 chr11 18918550 18918689 -129864783 - AluSp SINE Alu -174 139 1 2128 123 0 7 chr11 18918690 18918991 -129864481 - AluSq SINE Alu -10 303 5 229 324 0 0 chr11 18919030 18919104 -129864368 + (TATATG)n Simple_repeat Simple_repeat 6 79 0 1750 179 0 16 chr11 18919313 18919442 -129864030 + AluJo SINE Alu 9 139 -173 2368 75 10 0 chr11 18919442 18919735 -129863737 + AluY SINE Alu 1 296 -15 1750 179 0 16 chr11 18919735 18919912 -129863560 + AluJo SINE Alu 139 310 -2 1661 189 3 7 chr11 18919962 18920258 -129863214 + AluJo SINE Alu 1 295 -17 202 241 0 52 chr11 18920315 18920373 -129863099 - L2 LINE L2 0 3272 3218 308 221 127 44 chr11 18920948 18921106 -129862366 - Charlie7 DNA MER1_type 0 2612 2442 1862 162 7 0 chr11 18921107 18921404 -129862068 + AluJb SINE Alu 1 299 -13 2100 88 0 0 chr11 18921529 18921789 -129861683 - AluSc SINE Alu -49 260 1 581 269 0 29 chr11 18922340 18922359 -129861113 - L1MA10 LINE L1 0 6334 6316 1175 266 51 61 chr11 18922359 18922732 -129860740 - L1ME1 LINE L1 -5 6161 5795 1320 192 3 84 chr11 18922732 18923040 -129860432 - AluSx SINE Alu -29 283 1 1175 266 51 61 chr11 18923040 18923259 -129860213 - L1ME1 LINE L1 -371 5795 5575 751 163 7 20 chr11 18923260 18923530 -129859942 + AluJ SINE Alu 1 312 0 2158 121 3 16 chr11 18923554 18923859 -129859613 + AluSq SINE Alu 1 301 -12 1883 119 14 21 chr11 18924004 18924321 -129859151 - AluSx SINE Alu 0 315 1 7026 167 33 17 chr11 18924323 18925575 -129857897 - L1PBa LINE L1 -2879 3983 2660 2375 107 0 0 chr11 18925575 18925884 -129857588 + AluSx SINE Alu 1 309 -3 7026 167 33 17 chr11 18925884 18926897 -129856575 - L1PBa LINE L1 -4202 2660 1665 1120 144 11 16 chr11 18926897 18927084 -129856388 - AluSx SINE Alu -126 186 1 231 276 49 25 chr11 18927397 18927560 -129855912 - L1ME LINE L1 -3733 2649 2483 984 181 109 23 chr11 18927656 18927688 -129855784 - L1MB7 LINE L1 0 6184 6156 2637 131 46 10 chr11 18927688 18928101 -129855371 + MSTA LTR MaLR 1 428 0 984 181 109 23 chr11 18928101 18928334 -129855138 - L1MB7 LINE L1 -28 6156 5896 1607 164 7 3 chr11 18928953 18929257 -129854215 - AluSp SINE Alu -8 305 1 305 268 68 113 chr11 18929641 18929996 -129853476 - L1ME LINE L1 -5063 1309 971 2398 76 3 0 chr11 18930002 18930306 -129853166 - AluSp SINE Alu -8 305 1 311 316 32 0 chr11 18930587 18930682 -129852790 - L1M4 LINE L1 -4703 1681 1584 389 278 19 108 chr11 18930751 18930946 -129852526 - L1M4 LINE L1 -1008 5138 4927 2165 153 67 48 chr11 18930946 18930991 -129852481 - MSTB LTR MaLR 0 426 383 2460 65 0 0 chr11 18930991 18931298 -129852174 + AluY SINE Alu 1 307 -4 1698 157 49 0 chr11 18931303 18931590 -129851882 + AluSx SINE Alu 1 301 -11 2165 153 67 48 chr11 18931590 18931956 -129851516 - MSTB LTR MaLR -46 380 1 389 278 19 108 chr11 18931956 18931972 -129851500 - L1M4 LINE L1 -1218 4928 4946 801 275 21 21 chr11 18932389 18932625 -129850847 + MIR SINE MIR 8 243 -19 2258 98 0 0 chr11 18932801 18933108 -129850364 + AluSq SINE Alu 1 307 -6 1813 137 3 56 chr11 18933213 18933535 -129849937 + AluSx SINE Alu 1 305 -7 2002 115 3 47 chr11 18933540 18933862 -129849610 + AluSc SINE Alu 1 308 -1 21 36 0 0 chr11 18933966 18933994 -129849478 + AT_rich Low_complexity Low_complexity 1 28 0 656 163 81 0 chr11 18934022 18934145 -129849327 + L1MB3 LINE L1 6020 6152 -31 1483 180 12 43 chr11 18934167 18934489 -129848983 + AluJo SINE Alu 1 312 0 831 239 6 6 chr11 18934492 18934668 -129848804 + AluJo/FRAM SINE Alu 129 304 -8 1896 117 0 0 chr11 18935401 18935667 -129847805 - AluSx SINE Alu -10 302 37 1902 164 0 0 chr11 18936188 18936498 -129846974 - AluSx SINE Alu 0 312 3 405 0 0 0 chr11 18937345 18937390 -129846082 + (TA)n Simple_repeat Simple_repeat 1 45 0 22 0 0 0 chr11 18937608 18937630 -129845842 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 18937740 18937761 -129845711 + AT_rich Low_complexity Low_complexity 1 21 0 1940 125 0 33 chr11 18937933 18938237 -129845235 - AluSg SINE Alu -16 294 1 1590 186 0 19 chr11 18938429 18938746 -129844726 + AluJb SINE Alu 1 311 -1 472 250 0 0 chr11 18939100 18939204 -129844268 - L2 LINE L2 -2 3311 3208 194 338 68 23 chr11 18939172 18939305 -129844167 - L2 LINE L2 -845 2469 2331 * 807 217 97 23 chr11 18939326 18939543 -129843929 - MLT1K LTR MaLR -37 551 319 1993 100 10 20 chr11 18939875 18940176 -129843296 - AluY SINE Alu -13 298 1 1219 134 56 22 chr11 18940821 18941052 -129842420 + AluJo SINE Alu 74 312 0 22 0 0 0 chr11 18941667 18941689 -129841783 + AT_rich Low_complexity Low_complexity 1 22 0 309 133 0 0 chr11 18943166 18943211 -129840261 + Alu SINE Alu 246 290 -12 1296 194 57 0 chr11 18943261 18943540 -129839932 + AluJo SINE Alu 1 295 -17 2165 114 0 0 chr11 18943841 18944139 -129839333 - AluSx SINE Alu -14 298 1 1729 147 10 20 chr11 18944333 18944633 -129838839 - AluJb SINE Alu -15 297 1 347 159 18 159 chr11 18945057 18945170 -129838302 + MER106B DNA MER1_type 27 123 -936 315 0 0 0 chr11 18945200 18945235 -129838237 + (TA)n Simple_repeat Simple_repeat 1 35 0 1214 119 0 0 chr11 18945243 18945420 -129838052 - AluSg/x SINE Alu -4 306 130 1782 102 74 0 chr11 18945422 18945707 -129837765 - AluSx SINE Alu -6 306 1 397 209 11 33 chr11 18945722 18945813 -129837659 + MER106B DNA MER1_type 971 1059 0 3313 98 2 15 chr11 18945841 18946298 -129837174 - MLT2A2 LTR ERVL 0 453 3 2085 75 0 0 chr11 18946398 18946664 -129836808 - AluSx SINE Alu -12 300 35 2058 120 0 7 chr11 18946799 18947098 -129836374 - AluSx SINE Alu -15 297 1 488 180 60 20 chr11 18949317 18949417 -129834055 - FLAM_C SINE Alu -29 114 11 335 90 149 0 chr11 18950577 18950644 -129832828 - L1MC2 LINE L1 -14 6330 6254 2217 152 53 29 chr11 18950663 18951203 -129832269 + MLT2A2 LTR ERVL 1 554 0 2266 168 24 14 chr11 18951210 18951634 -129831838 - L1MC3 LINE L1 -115 7670 7243 1469 164 3 75 chr11 18951754 18951903 -129831569 + AluJo SINE Alu 9 124 -188 2299 79 0 7 chr11 18951903 18952206 -129831266 + AluSq SINE Alu 1 301 -12 1469 164 3 75 chr11 18952206 18952374 -129831098 + AluJo SINE Alu 124 303 -9 322 265 122 10 chr11 18952707 18952819 -129830653 + MIR SINE MIR 30 154 -54 861 110 0 22 chr11 18952917 18953053 -129830419 - MER41B LTR ERV1 0 635 503 1828 147 0 3 chr11 18953058 18953351 -129830121 + AluSx SINE Alu 18 309 -3 3200 144 7 35 chr11 18953353 18953377 -129830095 - MER41B LTR ERV1 -87 548 525 2227 85 7 3 chr11 18953377 18953682 -129829790 + AluSc SINE Alu 3 308 -1 3200 144 7 35 chr11 18953682 18954204 -129829268 - MER41B LTR ERV1 -110 525 17 2266 115 0 0 chr11 18954208 18954521 -129828951 - AluSq SINE Alu 0 313 1 1240 189 18 14 chr11 18954522 18954549 -129828923 - HERVK14 LTR ERVK -157 5788 5761 3388 90 17 21 chr11 18954549 18955025 -129828447 - MER41-int LTR ERV1 0 5946 5473 1837 107 0 4 chr11 18955026 18955288 -129828184 - AluSg SINE Alu -4 306 46 1824 98 4 8 chr11 18955467 18955721 -129827751 - LTR8A LTR ERV1 -474 253 1 251 253 77 22 chr11 18955726 18955817 -129827655 - L2 LINE L2 -56 3257 3162 398 219 104 15 chr11 18956805 18956932 -129826540 - MIR SINE MIR -66 142 33 2071 121 0 0 chr11 18959850 18960148 -129823324 + AluSx SINE Alu 13 310 -2 1552 219 162 29 chr11 18961089 18961577 -129821895 - MLT1H1 LTR MaLR 0 555 3 760 307 187 10 chr11 18961791 18962373 -129821099 - MER115 DNA AcHobo 0 693 1 544 99 44 0 chr11 18962767 18962858 -129820614 - AluSg/x SINE Alu -1 309 215 259 114 0 0 chr11 18962858 18962902 -129820570 + Alu SINE Alu 257 300 -1 2282 83 17 0 chr11 18963174 18963475 -129819997 - AluSg SINE Alu -4 306 1 1746 225 37 83 chr11 18963743 18964311 -129819161 - MLT1F LTR MaLR 0 542 1 2130 108 0 0 chr11 18965553 18965840 -129817632 + AluSx SINE Alu 1 287 -25 286 293 86 26 chr11 18965968 18966084 -129817388 + MER5B DNA MER1_type 1 123 -55 215 224 82 0 chr11 18966124 18966173 -129817299 - MER5B DNA MER1_type -124 54 2 870 167 0 0 chr11 18966176 18966308 -129817164 + FLAM_C SINE Alu 2 133 0 751 173 31 80 chr11 18968073 18968235 -129815237 - LTR8A LTR ERV1 0 727 574 1315 214 24 54 chr11 18968241 18968667 -129814805 - LTR8A LTR ERV1 -275 452 40 690 330 87 19 chr11 18968792 18969113 -129814359 + L3 LINE CR1 1231 1573 -4 311 255 47 77 chr11 18969211 18969405 -129814067 + MIR SINE MIR 18 205 -57 500 227 45 9 chr11 18969407 18969517 -129813955 - L2 LINE L2 0 3313 3200 466 303 62 6 chr11 18969677 18969839 -129813633 - MIR SINE MIR -90 172 2 359 322 119 11 chr11 18969971 18970148 -129813324 + L2 LINE L2 3025 3220 -52 592 279 68 44 chr11 18970159 18970269 -129813203 - L2 LINE L2 0 3313 3207 539 297 135 0 chr11 18970269 18970498 -129812974 + MIR SINE MIR 1 260 -2 592 279 68 44 chr11 18970498 18970638 -129812834 - L2 LINE L2 -106 3207 3057 1016 292 88 59 chr11 18972046 18972419 -129811053 - MER115 DNA AcHobo -271 422 39 477 289 39 9 chr11 18972963 18973151 -129810321 - L2 LINE L2 0 3272 3026 693 275 87 10 chr11 18973730 18973937 -129809535 + MIR SINE MIR 38 260 -2 308 277 45 9 chr11 18974668 18974780 -129808692 + LTR7 LTR ERV1 333 448 -2 2671 153 9 22 chr11 18974784 18975248 -129808224 + HERVH LTR ERV1 2 459 -7254 10357 107 9 34 chr11 18975302 18977560 -129805912 + HERVH LTR ERV1 793 2995 -4718 * 10616 113 30 39 chr11 18977539 18979330 -129804142 + HERVH LTR ERV1 3140 4915 -2798 1349 172 23 0 chr11 18979327 18979589 -129803883 + HERVH LTR ERV1 5749 6016 -1697 * 3559 114 5 11 chr11 18979582 18980142 -129803330 + HERVH LTR ERV1 7157 7713 0 1392 174 111 67 chr11 18980142 18980573 -129802899 + LTR7 LTR ERV1 1 450 0 2386 88 0 0 chr11 18980761 18981057 -129802415 + AluSx SINE Alu 1 296 -16 388 278 37 0 chr11 18981113 18981221 -129802251 + L2 LINE L2 3161 3272 0 187 348 22 22 chr11 18981318 18981407 -129802065 - L2 LINE L2 -1893 1421 1333 365 269 16 32 chr11 18981417 18981602 -129801870 + L1MC/D LINE L1 5613 5801 -441 1624 201 191 73 chr11 18981619 18981775 -129801697 - LTR41 LTR ERVL -6 767 631 2173 109 0 3 chr11 18981775 18982060 -129801412 + AluSx SINE Alu 12 295 -17 1624 201 191 73 chr11 18982060 18982589 -129800883 - LTR41 LTR ERVL -142 631 1 325 294 6 75 chr11 18982597 18982757 -129800715 + L1ME4a LINE L1 5686 5803 -439 1731 193 7 10 chr11 18982823 18983119 -129800353 - AluJo SINE Alu -17 295 1 480 305 106 75 chr11 18983269 18983377 -129800095 + L1ME4a LINE L1 5657 5760 -361 2199 119 6 3 chr11 18983377 18983689 -129799783 - AluSq SINE Alu 0 313 1 480 305 106 75 chr11 18983689 18983854 -129799618 + L1ME4a LINE L1 5760 5946 -175 2112 108 21 3 chr11 18983854 18984142 -129799330 - AluSx SINE Alu -19 293 1 480 305 106 75 chr11 18984142 18984215 -129799257 + L1ME4a LINE L1 5946 6015 -106 254 240 120 56 chr11 18984575 18984700 -129798772 + MIR3 SINE MIR 49 181 -27 208 227 23 0 chr11 18985104 18985148 -129798324 - L2 LINE L2 -2 3270 3226 269 156 91 150 chr11 18985221 18985394 -129798078 + L2 LINE L2 2870 3032 -240 689 239 35 25 chr11 18985483 18985680 -129797792 - MIR SINE MIR -31 231 33 385 360 29 0 chr11 18985715 18985854 -129797618 + L2 LINE L2 3171 3313 0 305 317 59 48 chr11 18985837 18985935 -129797537 + MIR SINE MIR 74 169 -93 * 189 74 0 0 chr11 18985935 18985962 -129797510 + (TA)n Simple_repeat Simple_repeat 1 27 0 2392 95 0 0 chr11 18985962 18986257 -129797215 - AluSx SINE Alu -17 295 1 305 317 59 48 chr11 18986257 18986343 -129797129 + MIR SINE MIR 168 261 -1 475 193 75 53 chr11 18986679 18986826 -129796646 + MIR3 SINE MIR 3 159 -49 2348 99 0 0 chr11 18986914 18987208 -129796264 - AluSx SINE Alu -18 294 1 318 239 135 25 chr11 18987406 18987569 -129795903 + L1ME4a LINE L1 5790 5970 -151 237 156 52 78 chr11 18987593 18987670 -129795802 + MIR SINE MIR 179 253 -9 247 204 0 0 chr11 18987781 18987830 -129795642 - L1MC4 LINE L1 -1339 6703 6655 234 233 0 0 chr11 18988506 18988549 -129794923 - L2 LINE L2 -9 3304 3262 376 165 35 24 chr11 18988568 18988653 -129794819 - L2 LINE L2 -2 3311 3226 203 318 0 45 chr11 18988843 18988909 -129794563 - MIR SINE MIR -72 190 128 333 238 164 16 chr11 18989061 18989183 -129794289 - MIR SINE MIR -121 141 2 570 232 35 0 chr11 18989764 18989906 -129793566 - MIR3 SINE MIR -3 205 59 1141 204 31 9 chr11 18989907 18990133 -129793339 - MIR SINE MIR -18 244 14 540 254 55 30 chr11 18990490 18990655 -129792817 - MIR SINE MIR -74 188 20 267 256 211 0 chr11 18991460 18991550 -129791922 + MIR SINE MIR 19 127 -135 356 284 155 0 chr11 18991550 18991707 -129791765 + MLT1G1 LTR MaLR 1 228 -367 2147 115 7 3 chr11 18991707 18992002 -129791470 + AluSq SINE Alu 3 298 -15 356 284 155 0 chr11 18992002 18992017 -129791455 + MLT1G1 LTR MaLR 228 239 -356 348 250 0 0 chr11 18992020 18992092 -129791380 + MIR SINE MIR 179 250 -12 279 239 14 42 chr11 18992623 18992694 -129790778 - MIR3 SINE MIR -29 179 111 270 281 53 44 chr11 18993044 18993158 -129790314 + MIR3 SINE MIR 73 187 -21 312 271 85 68 chr11 18993172 18993349 -129790123 + L2 LINE L2 2700 2879 -435 243 355 48 30 chr11 18995250 18995416 -129788056 + MER5B DNA MER1_type 3 171 -7 189 259 103 0 chr11 18995793 18995851 -129787621 + L2 LINE L2 3211 3274 -39 487 247 247 0 chr11 18995988 18996150 -129787322 + MIR SINE MIR 49 250 -12 213 65 0 0 chr11 18996922 18996953 -129786519 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 533 259 93 0 chr11 19002951 19003090 -129780382 + MIR3 SINE MIR 39 190 -18 183 42 0 0 chr11 19003705 19003729 -129779743 + (CA)n Simple_repeat Simple_repeat 1 24 0 361 241 43 111 chr11 19003738 19003900 -129779572 + MIR3 SINE MIR 8 158 -50 246 161 36 36 chr11 19003993 19004049 -129779423 + MIR3 SINE MIR 105 160 -48 335 256 12 12 chr11 19004051 19004137 -129779335 + MER5B DNA MER1_type 3 88 -90 458 271 41 47 chr11 19004301 19004471 -129779001 + LTR33 LTR ERVL 3 171 -350 428 204 174 35 chr11 19004535 19004592 -129778880 + LTR33 LTR ERVL 326 374 -147 2312 100 3 0 chr11 19004592 19004892 -129778580 - AluSx SINE Alu -9 303 3 428 204 174 35 chr11 19004892 19005006 -129778466 + LTR33 LTR ERVL 374 521 0 523 306 89 6 chr11 19005312 19005469 -129778003 - L2 LINE L2 0 3272 3103 2139 111 47 3 chr11 19005763 19006061 -129777411 + AluSq SINE Alu 1 311 -2 2507 83 0 0 chr11 19006410 19006710 -129776762 - AluY SINE Alu -11 300 1 795 109 101 13 chr11 19007543 19007701 -129775771 - LTR7 LTR ERV1 -232 218 1 501 151 0 0 chr11 19007858 19007944 -129775528 + CT-rich Low_complexity Low_complexity 2 87 0 1811 174 0 13 chr11 19008001 19008300 -129775172 - AluSx SINE Alu -17 295 1 2074 114 0 49 chr11 19008405 19008729 -129774743 + AluSx SINE Alu 1 308 -4 442 294 96 18 chr11 19008766 19009038 -129774434 + HAL1 LINE L1 1986 2278 -229 791 159 32 0 chr11 19009045 19009171 -129774301 + FRAM SINE Alu 26 155 -21 261 245 21 63 chr11 19009179 19009322 -129774150 + HAL1 LINE L1 2291 2427 -80 2093 125 16 38 chr11 19009381 19009700 -129773772 - AluSx SINE Alu 0 312 1 1935 71 0 84 chr11 19009701 19010011 -129773461 + MER4E LTR ERV1 483 766 0 2371 107 0 0 chr11 19010073 19010382 -129773090 + AluSc SINE Alu 1 309 0 307 239 34 11 chr11 19010387 19010475 -129772997 + ORSL DNA AcHobo 186 275 0 828 275 35 53 chr11 19010689 19011143 -129772329 + L1ME LINE L1 5347 5792 -329 2226 122 3 0 chr11 19011147 19011458 -129772014 + AluSx SINE Alu 1 312 0 1775 164 21 93 chr11 19011583 19011879 -129771593 - MLT1B LTR MaLR 0 390 74 2182 133 0 13 chr11 19011879 19012187 -129771285 - AluSx SINE Alu -8 304 1 1775 164 21 93 chr11 19012187 19012203 -129771269 - MLT1B LTR MaLR -316 74 58 1829 149 49 7 chr11 19012203 19012491 -129770981 - AluSx SINE Alu -12 300 1 1775 164 21 93 chr11 19012491 19012597 -129770875 - MLT1B LTR MaLR -332 58 1 1985 114 4 0 chr11 19013188 19013452 -129770020 - AluSq SINE Alu -48 265 1 344 163 75 0 chr11 19013582 19013662 -129769810 - MER53 DNA DNA 0 189 104 1783 138 10 58 chr11 19013673 19013964 -129769508 + AluJb SINE Alu 1 277 -35 256 103 26 0 chr11 19013964 19014003 -129769469 - MER53 DNA DNA -147 42 3 340 333 145 11 chr11 19014390 19014576 -129768896 + MIR SINE MIR 50 260 -2 184 258 68 104 chr11 19014609 19014830 -129768642 - L2 LINE L2 0 3313 3101 1022 109 63 11 chr11 19014914 19015088 -129768384 - MLT1B LTR MaLR 0 390 208 793 110 152 0 chr11 19015081 19015226 -129768246 - LTR24C LTR ERV1 -457 178 12 * 2832 7 0 0 chr11 19015279 19015579 -129767893 - AluYa5 SINE Alu -11 300 1 422 214 121 29 chr11 19015590 19015774 -129767698 - L1MB8 LINE L1 -2 6176 5975 2239 104 10 0 chr11 19018303 19018592 -129764880 + AluSq SINE Alu 5 296 -17 2063 139 3 23 chr11 19018780 19019083 -129764389 - AluSx SINE Alu -15 297 1 1643 125 79 59 chr11 19019329 19019372 -129764100 - AluSx SINE Alu -2 310 269 186 43 0 0 chr11 19019372 19019395 -129764077 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 1643 125 79 59 chr11 19019395 19019655 -129763817 - AluSx SINE Alu -43 269 1 1186 120 8 68 chr11 19019897 19020026 -129763446 - Tigger2 DNA MER2_type -2482 236 128 2373 119 0 0 chr11 19020026 19020338 -129763134 - AluSx SINE Alu 0 312 1 1186 120 8 68 chr11 19020338 19020458 -129763014 - Tigger2 DNA MER2_type -2590 128 2 510 301 236 0 chr11 19020740 19020939 -129762533 + MIR SINE MIR 7 252 -10 365 229 143 67 chr11 19021072 19021086 -129762386 + L2 LINE L2 3088 3100 -213 1786 152 50 3 chr11 19021086 19021383 -129762089 - AluJb SINE Alu -1 311 1 365 229 143 67 chr11 19021383 19021578 -129761894 + L2 LINE L2 3100 3313 0 2106 92 3 7 chr11 19021605 19021912 -129761560 + AluY SINE Alu 1 306 0 274 246 14 0 chr11 19021912 19021981 -129761491 - MIR SINE MIR -94 114 45 1472 150 25 29 chr11 19022405 19022723 -129760749 + LTR8 LTR ERV1 256 590 -137 252 204 80 105 chr11 19022795 19022883 -129760589 - L1MB8 LINE L1 -2332 5476 5392 2241 121 0 3 chr11 19022883 19023197 -129760275 - AluSq SINE Alu 0 313 1 252 204 80 105 chr11 19023197 19023270 -129760202 - L1MB8 LINE L1 -2416 5392 5319 229 229 0 0 chr11 19023488 19023536 -129759936 + MER53 DNA DNA 1 48 -141 418 164 410 0 chr11 19023539 19023673 -129759799 + MER53 DNA DNA 1 189 0 486 200 214 32 chr11 19023886 19023996 -129759476 - MER113 DNA MER1_type? -261 260 171 2121 83 97 0 chr11 19023996 19024274 -129759198 + AluSg SINE Alu 1 305 -5 486 200 214 32 chr11 19024274 19024383 -129759089 - MER113 DNA MER1_type? -350 171 1 1983 168 96 53 chr11 19024448 19024918 -129758554 - LTR2B LTR ERV1 0 490 1 434 159 0 0 chr11 19025020 19025089 -129758383 - LTR8 LTR ERV1 0 691 623 2069 106 4 4 chr11 19025090 19025365 -129758107 + AluSg SINE Alu 1 275 -35 235 28 0 0 chr11 19025392 19025428 -129758044 + MER41A LTR ERV1 429 464 -90 581 210 0 17 chr11 19025457 19025576 -129757896 - LTR8 LTR ERV1 -54 637 521 192 97 0 0 chr11 19027136 19027167 -129756305 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 39459 60 7 2 chr11 19027169 19033259 -129750213 - L1PA5 LINE L1 -27 6127 11 2838 131 7 86 chr11 19033272 19033845 -129749627 - LTR8 LTR ERV1 -163 528 1 3719 131 46 7 chr11 19033855 19034466 -129749006 + MER41B LTR ERV1 1 635 0 1049 196 18 40 chr11 19034669 19034805 -129748667 + AluJo SINE Alu 1 133 -179 1952 142 0 4 chr11 19034805 19035113 -129748359 + AluSx SINE Alu 3 309 0 1049 196 18 40 chr11 19035113 19035200 -129748272 + AluJo SINE Alu 133 220 -92 322 49 0 0 chr11 19035200 19035241 -129748231 + AluSg/x SINE Alu 84 124 -176 255 156 23 8 chr11 19035341 19035395 -129748077 - Alu SINE Alu -257 43 1 335 213 120 47 chr11 19035406 19035556 -129747916 + L1MC5 LINE L1 7327 7487 -474 1850 137 4 11 chr11 19035628 19035906 -129747566 + AluJo SINE Alu 21 296 -16 1397 162 107 21 chr11 19035906 19036234 -129747238 + L1MB8 LINE L1 5819 6174 -4 414 161 174 7 chr11 19036261 19036410 -129747062 + L1MC5 LINE L1 7521 7694 -267 1716 119 36 46 chr11 19036832 19037134 -129746338 + AluJb SINE Alu 3 301 -11 213 295 0 16 chr11 19037141 19037202 -129746270 - MIR3 SINE MIR -4 204 145 401 233 69 31 chr11 19037253 19037412 -129746060 + MER103 DNA DNA 1 165 -1 190 237 0 0 chr11 19037470 19037508 -129745964 - MIR3 SINE MIR -49 159 122 1537 160 97 3 chr11 19038319 19038619 -129744853 - MER7A DNA MER2_type 0 346 21 1346 172 57 0 chr11 19038863 19039107 -129744365 + AluJb SINE Alu 42 299 -13 270 275 46 0 chr11 19039798 19039907 -129743565 + MIR SINE MIR 149 262 0 356 289 114 13 chr11 19039949 19040098 -129743374 - L3 LINE CR1 -88 1489 1326 223 342 92 8 chr11 19040098 19040218 -129743254 - L2 LINE L2 -20 3252 3123 21 0 0 0 chr11 19040564 19040585 -129742887 + AT_rich Low_complexity Low_complexity 1 21 0 305 337 21 0 chr11 19041154 19041249 -129742223 + L1ME LINE L1 21 117 -5953 1822 144 10 39 chr11 19041358 19041664 -129741808 - AluSq SINE Alu -16 297 1 1739 173 13 23 chr11 19041859 19042159 -129741313 + AluJo SINE Alu 3 299 -13 2074 122 7 13 chr11 19042429 19042733 -129740739 + AluSx SINE Alu 1 302 -10 198 167 0 133 chr11 19043961 19044021 -129739451 + L3b LINE CR1 1432 1483 -100 * 219 346 0 58 chr11 19043971 19044075 -129739397 - MER5A DNA MER1_type -32 157 60 274 308 154 10 chr11 19044439 19044543 -129738929 + L2 LINE L2 3148 3266 -6 821 128 0 0 chr11 19044652 19044769 -129738703 + AluJo/FLAM SINE Alu 1 117 -185 303 130 103 30 chr11 19044769 19044953 -129738519 + AluJ SINE Alu 46 287 -15 2028 136 19 23 chr11 19044964 19045273 -129738199 + AluSx SINE Alu 1 308 -4 1322 68 0 0 chr11 19046208 19046371 -129737101 + AluY SINE Alu 136 298 -13 1557 153 127 4 chr11 19046805 19047073 -129736399 - AluJb SINE Alu -11 301 1 21 0 0 0 chr11 19047109 19047130 -129736342 + AT_rich Low_complexity Low_complexity 1 21 0 2262 68 35 66 chr11 19050751 19050815 -129732657 + THE1A LTR MaLR 1 65 -290 186 43 0 0 chr11 19050815 19050838 -129732634 + (TG)n Simple_repeat Simple_repeat 2 24 0 2262 68 35 66 chr11 19050838 19051007 -129732465 + THE1A LTR MaLR 65 222 -133 2223 100 17 3 chr11 19051007 19051306 -129732166 + AluSq SINE Alu 1 303 -10 2262 68 35 66 chr11 19051306 19051437 -129732035 + THE1A LTR MaLR 222 355 0 1182 64 0 0 chr11 19052730 19052871 -129730601 - AluSg/x SINE Alu -8 302 162 21 36 0 0 chr11 19053389 19053417 -129730055 + AT_rich Low_complexity Low_complexity 1 28 0 777 201 5 22 chr11 19053596 19053780 -129729692 + LTR28 LTR ERV1 1 181 -839 299 194 15 0 chr11 19053799 19053866 -129729606 + LTR1 LTR ERV1 119 186 -599 * 1212 211 20 32 chr11 19053840 19054181 -129729291 + LTR27 LTR ERV1 300 636 0 6741 20 9 1 chr11 19054285 19055070 -129728402 + L1PA4 LINE L1 5364 6154 -1 777 161 31 0 chr11 19055330 19055460 -129728012 - AluJo SINE Alu -177 135 2 2205 85 32 0 chr11 19056639 19056921 -129726551 + AluSc SINE Alu 1 291 -18 896 205 18 6 chr11 19057023 19057194 -129726278 - FAM SINE Alu -2 173 1 1754 221 86 29 chr11 19058977 19059488 -129723984 + MER77 LTR ERV1 58 597 -8 979 76 0 0 chr11 19063615 19063734 -129719738 + AluY SINE Alu 178 296 -15 1762 123 84 0 chr11 19063977 19064306 -129719166 + AluSx SINE Alu 1 351 0 1234 193 157 0 chr11 19064346 19064595 -129718877 + AluJb SINE Alu 1 288 -24 2015 116 26 20 chr11 19064605 19064907 -129718565 + AluSx SINE Alu 2 305 -7 3326 251 151 11 chr11 19065911 19066996 -129716476 - L2 LINE L2 -386 2928 1692 451 159 16 10 chr11 19066996 19067196 -129716276 + (TA)n Simple_repeat Simple_repeat 1 201 0 2336 104 0 7 chr11 19067198 19067506 -129715966 - AluSg SINE Alu -4 306 1 5800 102 54 12 chr11 19067513 19068606 -129714866 - L1MA4A LINE L1 -4 6299 5162 297 91 0 0 chr11 19068606 19068650 -129714822 - AluSx SINE Alu -10 292 249 1985 105 11 25 chr11 19068752 19069029 -129714443 - AluSx SINE Alu -39 273 1 3328 171 27 1 chr11 19069029 19069689 -129713783 - L1MA4A LINE L1 -978 5168 4492 709 296 120 8 chr11 19069716 19069966 -129713506 - L2 LINE L2 -1636 1678 1401 265 171 60 162 chr11 19071030 19071147 -129712325 - L3 LINE CR1 -17 1560 1456 411 296 101 38 chr11 19071235 19071292 -129712180 - L3 LINE CR1 -314 1263 1211 2472 80 0 0 chr11 19071292 19071593 -129711879 - AluY SINE Alu -10 301 1 411 296 101 38 chr11 19071593 19071694 -129711778 - L3 LINE CR1 -366 1211 1095 252 336 251 22 chr11 19071745 19071843 -129711629 - L3 LINE CR1 -823 754 680 1869 163 13 3 chr11 19071843 19072143 -129711329 + AluJb SINE Alu 1 303 -9 252 336 251 22 chr11 19072143 19072630 -129710842 - L3 LINE CR1 -897 680 35 320 302 12 0 chr11 19072853 19072939 -129710533 - L3 LINE CR1 -70 1507 1421 1691 156 15 0 chr11 19073182 19073445 -129710027 - AluJb SINE Alu -16 296 30 2084 102 3 39 chr11 19073745 19074050 -129709422 - AluSx SINE Alu -18 294 1 2120 114 4 0 chr11 19074332 19074640 -129708832 + AluSg SINE Alu 1 309 0 259 192 0 0 chr11 19075349 19075401 -129708071 + Alu SINE Alu 251 302 0 2222 86 14 0 chr11 19075737 19076029 -129707443 + AluSx SINE Alu 1 296 -16 23 33 0 0 chr11 19077445 19077475 -129705997 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr11 19077739 19077768 -129705704 + AT_rich Low_complexity Low_complexity 1 29 0 2047 162 0 0 chr11 19077794 19078096 -129705376 + AluSx SINE Alu 1 302 -10 1223 133 43 179 chr11 19078241 19078588 -129704884 + AluJb SINE Alu 1 300 -2 445 212 106 0 chr11 19078832 19078917 -129704555 - FLAM_A SINE Alu -28 114 21 2039 166 6 3 chr11 19079290 19079633 -129703839 - L1MB7 LINE L1 -21 6163 5820 1427 115 0 5 chr11 19079778 19079969 -129703503 + AluSq SINE Alu 1 190 -123 457 206 0 16 chr11 19079970 19080089 -129703383 - L1MDb LINE L1 -4769 1558 1159 958 65 41 0 chr11 19080427 19080550 -129702922 + AluSg/x SINE Alu 177 304 -8 643 101 20 0 chr11 19082975 19083074 -129700398 - AluSg/x SINE Alu -2 310 210 38 51 0 0 chr11 19083268 19083327 -129700145 + AT_rich Low_complexity Low_complexity 1 59 0 285 29 0 0 chr11 19083327 19083361 -129700111 + (TA)n Simple_repeat Simple_repeat 1 34 0 2251 105 0 3 chr11 19083461 19083755 -129699717 - AluSq SINE Alu -20 293 1 1629 160 4 11 chr11 19083767 19084035 -129699437 - AluJb SINE Alu -45 267 2 684 182 0 25 chr11 19084395 19084516 -129698956 + FLAM_A SINE Alu 16 133 -9 246 370 74 9 chr11 19084985 19085093 -129698379 + L2 LINE L2 3150 3264 -8 1241 139 0 0 chr11 19085615 19085787 -129697685 - AluJo SINE Alu -12 300 129 2505 70 0 0 chr11 19085791 19086089 -129697383 - AluY SINE Alu -13 298 1 435 237 96 22 chr11 19086283 19086418 -129697054 + MIR SINE MIR 118 262 0 1950 102 48 110 chr11 19087967 19088124 -129695348 - L1MA4 LINE L1 -33 6267 6102 978 144 0 0 chr11 19088124 19088256 -129695216 - AluJo SINE Alu -169 133 2 1950 102 48 110 chr11 19088256 19088498 -129694974 - L1MA4 LINE L1 -198 6102 5893 242 118 0 0 chr11 19088586 19088620 -129694852 - L1MA4 LINE L1 -377 5926 5893 1670 108 170 4 chr11 19088757 19089016 -129694456 - AluSx SINE Alu 0 302 1 898 186 90 16 chr11 19089027 19089215 -129694257 - AluJb SINE Alu -26 286 85 869 267 200 14 chr11 19089688 19090179 -129693293 + L1MC4a LINE L1 5329 5910 -1898 648 140 21 0 chr11 19090221 19090314 -129693158 - FLAM_A SINE Alu -14 128 34 305 239 77 54 chr11 19090338 19090468 -129693004 + L1ME4a LINE L1 5986 6118 -3 2025 107 4 0 chr11 19090919 19091191 -129692281 + AluSc SINE Alu 1 273 -36 2143 106 3 20 chr11 19091960 19092262 -129691210 - AluSg SINE Alu -12 298 2 2164 118 16 0 chr11 19092389 19092694 -129690778 - AluSq SINE Alu -3 310 1 1992 137 0 0 chr11 19092717 19093021 -129690451 - AluSx SINE Alu 0 309 6 1551 122 33 116 chr11 19093341 19093676 -129689796 - AluYb8 SINE Alu -11 307 1 489 352 116 0 chr11 19093927 19094181 -129689291 - L2 LINE L2 -201 3071 2785 358 257 0 0 chr11 19094355 19094429 -129689043 - MIR SINE MIR 0 262 189 612 255 84 11 chr11 19094429 19094660 -129688812 + MIR SINE MIR 8 262 0 218 339 54 39 chr11 19095133 19095263 -129688209 + L2 LINE L2 3141 3272 0 318 198 223 8 chr11 19095541 19095662 -129687810 + L1MC4a LINE L1 5757 5903 -1905 243 305 156 7 chr11 19096137 19096291 -129687181 + MIR3 SINE MIR 9 185 -23 21 71 0 0 chr11 19096894 19096936 -129686536 + AT_rich Low_complexity Low_complexity 1 42 0 2360 103 0 3 chr11 19097190 19097500 -129685972 - AluSc SINE Alu 0 309 1 1821 152 17 3 chr11 19098625 19098914 -129684558 - AluJo SINE Alu -19 293 1 22 35 0 0 chr11 19099171 19099200 -129684272 + AT_rich Low_complexity Low_complexity 1 29 0 231 167 0 0 chr11 19099222 19099264 -129684208 + (TA)n Simple_repeat Simple_repeat 1 42 0 289 168 32 84 chr11 19099266 19099361 -129684111 - L1MC4 LINE L1 -1339 6703 6614 2433 71 0 3 chr11 19099384 19099680 -129683792 - AluSc SINE Alu -14 295 1 2187 109 0 0 chr11 19099746 19100054 -129683418 - AluSx SINE Alu 0 308 1 2046 126 13 3 chr11 19100797 19101106 -129682366 - AluSx SINE Alu 0 312 1 1934 128 14 7 chr11 19101553 19101842 -129681630 + AluSx SINE Alu 1 291 -21 22 70 0 0 chr11 19101928 19101971 -129681501 + AT_rich Low_complexity Low_complexity 1 43 0 650 144 0 48 chr11 19102234 19102338 -129681134 - FLAM_A SINE Alu -18 124 26 2321 93 3 3 chr11 19102736 19103036 -129680436 - AluSp SINE Alu -13 300 1 180 200 22 22 chr11 19103104 19103149 -129680323 + L3 LINE CR1 361 405 -1172 763 238 126 10 chr11 19103302 19103508 -129679964 - MIR SINE MIR -30 232 3 230 282 84 0 chr11 19103508 19103578 -129679894 - MIR3 SINE MIR -40 168 93 2286 106 0 7 chr11 19103724 19104027 -129679445 - AluSx SINE Alu -11 301 1 2330 99 0 6 chr11 19104117 19104430 -129679042 - AluSq SINE Alu -2 311 1 749 208 0 0 chr11 19104470 19104595 -129678877 - FLAM_A SINE Alu -8 125 1 218 376 0 35 chr11 19104764 19104849 -129678623 + L2 LINE L2 3154 3235 -37 269 256 169 50 chr11 19105109 19105269 -129678203 + MER5A DNA MER1_type 1 179 -10 2203 106 14 0 chr11 19105455 19105748 -129677724 + AluSg SINE Alu 1 297 -13 343 294 43 0 chr11 19105783 19105875 -129677597 - L2 LINE L2 -8 3264 3169 198 373 13 0 chr11 19105884 19105959 -129677513 + MIR SINE MIR 1 76 -186 2135 108 6 19 chr11 19106571 19106885 -129676587 + AluSx SINE Alu 1 310 -2 2039 131 17 0 chr11 19106888 19107179 -129676293 + AluSx SINE Alu 1 296 -16 2389 86 0 7 chr11 19107182 19107485 -129675987 + AluSc SINE Alu 1 301 -8 1244 134 0 0 chr11 19107485 19107664 -129675808 + AluSg/x SINE Alu 132 310 0 2676 163 92 0 chr11 19107770 19108293 -129675179 + L1MB5 LINE L1 5587 6157 -17 248 29 0 0 chr11 19108402 19108437 -129675035 - Alu SINE Alu -7 296 262 2447 71 3 3 chr11 19108548 19108859 -129674613 - AluY SINE Alu 0 311 1 31 26 0 0 chr11 19108887 19108925 -129674547 + AT_rich Low_complexity Low_complexity 1 38 0 1202 160 0 0 chr11 19108960 19109135 -129674337 - FAM SINE Alu 0 175 1 429 260 93 27 chr11 19109182 19109332 -129674140 - MIR SINE MIR -98 164 5 517 256 0 16 chr11 19109465 19109586 -129673886 + MIR3 SINE MIR 82 200 -8 1245 122 35 0 chr11 19109915 19110087 -129673385 + AluSx SINE Alu 1 178 -134 2041 132 3 3 chr11 19110261 19110550 -129672922 - AluSq SINE Alu -22 291 3 2251 125 0 0 chr11 19110565 19110877 -129672595 - AluSx SINE Alu 0 312 1 694 148 35 26 chr11 19111354 19111469 -129672003 + AluJb SINE Alu 2 117 -195 441 0 0 0 chr11 19111469 19111518 -129671954 + (CA)n Simple_repeat Simple_repeat 2 50 0 334 248 165 15 chr11 19111690 19111823 -129671649 + L1MC/D LINE L1 5407 5559 -2249 471 250 146 28 chr11 19112065 19112107 -129671365 - MER5A DNA MER1_type -18 171 135 1988 133 7 0 chr11 19112107 19112400 -129671072 + AluSx SINE Alu 1 295 -17 471 250 146 28 chr11 19112400 19112501 -129670971 - MER5A DNA MER1_type -54 135 11 618 285 35 12 chr11 19112515 19112687 -129670785 + MIR SINE MIR 21 196 -66 1605 140 4 20 chr11 19112690 19112940 -129670532 + AluSx SINE Alu 1 246 -66 2161 93 38 3 chr11 19112940 19113229 -129670243 + AluSx SINE Alu 1 300 -12 487 83 0 0 chr11 19113231 19113291 -129670181 + AluSx SINE Alu 235 294 -17 227 273 0 0 chr11 19113293 19113348 -129670124 + MIR SINE MIR 202 256 -6 1703 135 23 63 chr11 19113473 19113647 -129669825 - AluJb SINE Alu -21 291 133 2263 103 0 0 chr11 19113647 19113939 -129669533 + AluSx SINE Alu 9 300 -12 1703 135 23 63 chr11 19113939 19114067 -129669405 - AluJb SINE Alu -179 133 1 1600 201 7 0 chr11 19114145 19114443 -129669029 + AluJo SINE Alu 1 300 -12 1765 163 3 3 chr11 19114688 19114982 -129668490 + AluJb SINE Alu 1 294 -18 2315 113 0 0 chr11 19115102 19115404 -129668068 + AluSx SINE Alu 1 302 -10 1844 141 38 0 chr11 19116926 19117216 -129666256 + AluSx SINE Alu 1 301 -11 2316 110 0 0 chr11 19117446 19117754 -129665718 - AluSx SINE Alu -4 308 1 719 207 8 0 chr11 19118099 19118220 -129665252 + FRAM SINE Alu 45 166 -10 1177 164 141 11 chr11 19118477 19118746 -129664726 - L1MC4 LINE L1 0 8042 7739 337 309 65 0 chr11 19118768 19118891 -129664581 + MIR SINE MIR 76 206 -56 292 198 0 172 chr11 19119021 19119137 -129664335 - Charlie8 DNA MER1_type -3 2414 232 195 129 0 0 chr11 19119162 19119193 -129664279 + (CAAAA)n Simple_repeat Simple_repeat 4 34 0 234 245 19 0 chr11 19119262 19119315 -129664157 + MIR3 SINE MIR 151 204 -4 1497 183 11 11 chr11 19119422 19119707 -129663765 + AluJo SINE Alu 5 289 -23 2343 89 0 0 chr11 19120456 19120748 -129662724 - AluY SINE Alu -19 292 1 706 264 114 62 chr11 19120865 19121270 -129662202 + L1ME4a LINE L1 5479 5904 -217 476 245 6 37 chr11 19121254 19121417 -129662055 + L1ME3A LINE L1 5793 5950 -220 * 1828 184 3 0 chr11 19122019 19122329 -129661143 + AluJb SINE Alu 1 311 -1 2003 127 27 3 chr11 19122625 19122924 -129660548 + AluSx SINE Alu 1 306 -6 1169 191 126 9 chr11 19123277 19123507 -129659965 + AluJo SINE Alu 39 295 -17 2422 83 0 0 chr11 19123511 19123813 -129659659 + AluY SINE Alu 3 304 -7 2336 94 3 0 chr11 19124077 19124375 -129659097 + AluSp SINE Alu 1 299 -14 494 217 46 66 chr11 19124386 19124538 -129658934 - MIR SINE MIR 0 262 114 251 129 81 48 chr11 19124915 19124977 -129658495 + CT-rich Low_complexity Low_complexity 2 65 0 2165 109 14 0 chr11 19125707 19125991 -129657481 - AluSx SINE Alu -23 289 2 253 286 129 2 chr11 19126306 19126414 -129657058 + MIR SINE MIR 50 171 -62 197 246 33 0 chr11 19126462 19126523 -129656949 + L2 LINE L2 3162 3224 -48 457 301 60 18 chr11 19127175 19127341 -129656131 + MIR SINE MIR 20 192 -70 1021 114 13 13 chr11 19127403 19127561 -129655911 + HUERS-P1 LTR ERV1 6106 6263 0 3997 106 3 44 chr11 19127561 19127825 -129655647 + LTR8 LTR ERV1 1 274 -417 1813 116 98 11 chr11 19127825 19128084 -129655388 + AluSx SINE Alu 1 311 0 208 0 0 0 chr11 19128084 19128123 -129655349 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 3997 106 3 44 chr11 19128124 19128455 -129655017 + LTR8 LTR ERV1 274 617 -74 2051 121 0 3 chr11 19128455 19128737 -129654735 + AluSx SINE Alu 1 281 -31 192 40 0 0 chr11 19128737 19128762 -129654710 + (CCAA)n Simple_repeat Simple_repeat 1 25 0 3997 106 3 44 chr11 19128762 19128776 -129654696 + LTR8 LTR ERV1 574 587 -104 221 75 25 0 chr11 19128777 19128817 -129654655 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 267 171 0 0 chr11 19129099 19129140 -129654332 + MLT1A1 LTR MaLR 113 153 -212 2451 85 0 7 chr11 19129142 19129449 -129654023 + AluSx SINE Alu 1 305 -7 1940 161 34 131 chr11 19129551 19130110 -129653362 + MLT1D LTR MaLR 1 505 0 2348 82 0 3 chr11 19130429 19130721 -129652751 - AluSg SINE Alu -19 291 1 319 282 38 70 chr11 19130728 19130941 -129652531 - MIR SINE MIR -10 252 47 237 239 98 11 chr11 19131224 19131316 -129652156 + MIR SINE MIR 92 191 -71 1424 188 57 48 chr11 19131343 19131715 -129651757 + L1MB7 LINE L1 4351 4725 -1421 2303 157 32 39 chr11 19131728 19132160 -129651312 + L1MB7 LINE L1 5466 5894 -284 299 139 0 0 chr11 19132161 19132204 -129651268 + MER49 LTR ERV1 789 831 -92 521 229 20 33 chr11 19132228 19132381 -129651091 + L1MB7 LINE L1 5874 6024 -160 2244 91 14 0 chr11 19132435 19132731 -129650741 + AluSq SINE Alu 2 301 -12 2111 118 20 0 chr11 19132952 19133248 -129650224 + AluSx SINE Alu 1 302 -10 506 88 0 0 chr11 19133958 19134026 -129649446 - AluJb SINE Alu -10 302 235 1024 143 6 12 chr11 19134026 19134187 -129649285 - AluJb SINE Alu -152 160 1 2199 124 0 3 chr11 19134478 19134776 -129648696 - AluSx SINE Alu -15 297 1 * 2321 91 14 0 chr11 19134776 19135071 -129648401 - AluSq SINE Alu -14 299 1 2317 98 3 0 chr11 19135210 19135505 -129647967 - AluSp SINE Alu -9 304 9 1692 158 7 30 chr11 19135649 19135952 -129647520 + AluJo SINE Alu 1 296 -16 563 232 9 0 chr11 19136009 19136121 -129647351 + MER3 DNA MER1_type 1 113 -96 454 252 47 59 chr11 19136121 19136180 -129647292 - L1 LINE L1 -777 5369 5311 2190 122 0 0 chr11 19136180 19136483 -129646989 - AluSg SINE Alu -7 303 1 454 252 47 59 chr11 19136483 19136600 -129646872 - L1 LINE L1 -835 5311 5193 725 169 0 70 chr11 19136600 19136742 -129646730 - FLAM_C SINE Alu 0 133 2 454 252 47 59 chr11 19136742 19136802 -129646670 - L1 LINE L1 -953 5193 5134 531 259 163 52 chr11 19136854 19137179 -129646293 - L1 LINE L1 -1098 5048 4760 2140 123 13 3 chr11 19137179 19137487 -129645985 - AluSx SINE Alu -1 311 1 531 259 163 52 chr11 19137487 19137701 -129645771 - L1 LINE L1 -1386 4760 4449 2219 110 0 7 chr11 19137768 19138069 -129645403 - AluSx SINE Alu -13 299 1 836 150 0 0 chr11 19138085 19138218 -129645254 - FRAM SINE Alu -24 152 20 1547 96 0 14 chr11 19138383 19138592 -129644880 + AluSg/x SINE Alu 85 290 -22 2268 98 10 3 chr11 19139073 19139380 -129644092 + AluSx SINE Alu 1 309 -3 807 241 136 66 chr11 19141151 19141578 -129641894 - L2 LINE L2 -3 3310 2915 686 235 33 6 chr11 19141578 19141761 -129641711 + MER5A DNA MER1_type 2 189 0 807 241 136 66 chr11 19141761 19141795 -129641677 - L2 LINE L2 -398 2915 2885 2419 222 59 19 chr11 19141795 19142385 -129641087 - MER90 LTR ERV1 0 614 1 807 241 136 66 chr11 19142385 19142540 -129640932 - L2 LINE L2 -428 2885 2624 357 301 8 0 chr11 19142837 19142960 -129640512 - MIR SINE MIR -21 241 118 208 215 62 15 chr11 19143113 19143178 -129640294 - MIR SINE MIR -97 165 98 1948 141 10 3 chr11 19143285 19143576 -129639896 + AluSx SINE Alu 1 293 -19 204 343 60 0 chr11 19143878 19143945 -129639527 + L2 LINE L2 3154 3224 -48 1655 181 32 0 chr11 19144121 19144403 -129639069 + AluJb SINE Alu 1 291 -21 277 208 104 0 chr11 19144565 19144642 -129638830 + L1ME LINE L1 5615 5699 -422 2302 117 0 0 chr11 19144904 19145202 -129638270 - AluSx SINE Alu -14 298 1 1966 132 3 3 chr11 19145365 19145682 -129637790 - AluSx SINE Alu 0 317 1 2346 114 3 0 chr11 19145738 19146044 -129637428 - AluSx SINE Alu -5 307 1 2268 99 0 16 chr11 19146200 19146503 -129636969 - AluSx SINE Alu -14 298 1 734 228 44 17 chr11 19148187 19148367 -129635105 + LTR41 LTR ERVL 1 185 -588 787 217 54 89 chr11 19148498 19148811 -129634661 + LTR41 LTR ERVL 460 761 -12 1906 157 7 3 chr11 19148885 19149178 -129634294 + AluJo SINE Alu 1 294 -18 1754 277 76 34 chr11 19149183 19149680 -129633792 + L1MEc LINE L1 37 512 -5884 2491 84 3 0 chr11 19149680 19149988 -129633484 + AluSp SINE Alu 2 310 -3 1754 277 76 34 chr11 19149988 19150269 -129633203 + L1MEc LINE L1 512 852 -5544 2487 71 0 0 chr11 19150269 19150564 -129632908 + AluSx SINE Alu 1 295 -17 1754 277 76 34 chr11 19150564 19150588 -129632884 + L1MEc LINE L1 852 874 -5522 189 319 125 31 chr11 19150623 19150783 -129632689 - L2 LINE L2 -1411 1903 1729 362 265 47 65 chr11 19151051 19151221 -129632251 + MIR SINE MIR 12 178 -84 2380 100 3 0 chr11 19151742 19152053 -129631419 - AluSp SINE Alu -1 312 1 2571 68 0 0 chr11 19152063 19152370 -129631102 - AluY SINE Alu -4 307 1 1252 177 158 11 chr11 19152994 19153260 -129630212 - AluJb SINE Alu -7 305 1 353 263 122 68 chr11 19153301 19153506 -129629966 + MIR SINE MIR 33 248 -14 194 271 0 57 chr11 19153984 19154054 -129629418 + MIR SINE MIR 79 144 -118 2634 49 0 0 chr11 19155468 19155774 -129627698 - AluY SINE Alu -4 307 2 1630 117 121 18 chr11 19156141 19156414 -129627058 + AluSx SINE Alu 2 302 -10 245 305 106 21 chr11 19156487 19156628 -129626844 - MIR SINE MIR -76 186 34 2358 104 10 0 chr11 19156727 19157035 -129626437 + AluSx SINE Alu 1 311 -1 1940 123 54 0 chr11 19157468 19157744 -129625728 - AluSx SINE Alu -21 291 1 2266 88 0 7 chr11 19158632 19158929 -129624543 - AluSx SINE Alu -17 295 1 2280 91 0 19 chr11 19162146 19162455 -129621017 + AluSx SINE Alu 1 303 -9 386 284 118 43 chr11 19162660 19162779 -129620693 - MIR SINE MIR -8 254 145 1223 177 108 59 chr11 19162779 19163067 -129620405 + AluJo SINE Alu 1 302 -10 386 284 118 43 chr11 19163067 19163158 -129620314 - MIR SINE MIR -117 145 28 24 32 0 0 chr11 19163641 19163672 -129619800 + AT_rich Low_complexity Low_complexity 1 31 0 2337 76 23 3 chr11 19164524 19164827 -129618645 - AluSp SINE Alu -4 309 1 965 162 131 5 chr11 19165202 19165393 -129618079 - MER20 DNA MER1_type -4 215 1 259 220 0 0 chr11 19165629 19165679 -129617793 + L2 LINE L2 3258 3307 -6 1235 199 153 0 chr11 19165907 19166168 -129617304 + AluJb SINE Alu 2 302 0 270 0 0 0 chr11 19168497 19168527 -129614945 + (CA)n Simple_repeat Simple_repeat 2 31 0 2307 108 0 3 chr11 19169109 19169415 -129614057 + AluSg SINE Alu 1 305 -5 2171 113 0 0 chr11 19169424 19169708 -129613764 + AluSx SINE Alu 1 284 -28 207 0 0 0 chr11 19169720 19169743 -129613729 + (TAAG)n Simple_repeat Simple_repeat 1 23 0 205 268 0 0 chr11 19170814 19170855 -129612617 + polypurine Low_complexity Low_complexity 3 43 0 852 110 7 29 chr11 19171101 19171237 -129612235 + FLAM_C SINE Alu 1 133 0 2205 121 0 0 chr11 19171241 19171539 -129611933 + AluSc SINE Alu 1 298 -11 386 229 0 0 chr11 19171851 19171934 -129611538 + MER113 DNA MER1_type? 1 83 -438 2153 115 0 13 chr11 19171957 19172262 -129611210 + AluSx SINE Alu 1 301 -11 2494 67 0 3 chr11 19172369 19172667 -129610805 + AluY SINE Alu 1 297 -14 25 0 0 0 chr11 19172670 19172695 -129610777 + AT_rich Low_complexity Low_complexity 1 25 0 1943 79 36 4 chr11 19172786 19173038 -129610434 + AluSq SINE Alu 1 260 -53 255 195 0 0 chr11 19173040 19173143 -129610329 + AluSq SINE Alu 243 345 0 1964 167 0 0 chr11 19173569 19173869 -129609603 + AluJo SINE Alu 1 300 -12 1866 156 14 3 chr11 19174012 19174301 -129609171 + AluJo SINE Alu 1 292 -20 349 162 0 0 chr11 19174304 19174372 -129609100 - L1MB8 LINE L1 -16 6162 6095 600 217 62 62 chr11 19174372 19174434 -129609038 - Tigger2 DNA MER2_type 0 2708 2647 2180 102 3 3 chr11 19174434 19174759 -129608713 + AluSq SINE Alu 1 325 0 600 217 62 62 chr11 19174759 19174856 -129608616 - Tigger2 DNA MER2_type -60 2648 2548 * 861 155 119 10 chr11 19174825 19175019 -129608453 - Tigger2 DNA MER2_type -2503 215 1 936 185 36 15 chr11 19175020 19175215 -129608257 - L1MB7 LINE L1 -87 6097 5899 1944 145 123 14 chr11 19175215 19175573 -129607899 + MLT2C1 LTR ERVL 1 397 0 1536 112 48 8 chr11 19175573 19175823 -129607649 - L1MB7 LINE L1 -281 5903 5644 2219 95 7 3 chr11 19176481 19176776 -129606696 + AluSp SINE Alu 1 296 -17 191 303 200 28 chr11 19177138 19177283 -129606189 - MIR3 SINE MIR -2 206 37 1099 152 0 101 chr11 19177316 19177553 -129605919 - AluJo SINE Alu -17 295 83 2225 102 3 16 chr11 19177575 19177879 -129605593 - AluSg SINE Alu -10 300 1 834 173 150 23 chr11 19178322 19178542 -129604930 + MIR SINE MIR 15 262 0 266 175 50 62 chr11 19178809 19178889 -129604583 + LTR24B LTR ERV1 194 272 -304 2033 126 3 58 chr11 19178891 19179216 -129604256 + AluSx SINE Alu 1 307 -5 2098 124 0 17 chr11 19179223 19179357 -129604115 + AluSx SINE Alu 3 138 -174 2377 83 3 3 chr11 19179357 19179658 -129603814 + AluY SINE Alu 1 301 -10 2098 124 0 17 chr11 19179658 19179822 -129603650 + AluSx SINE Alu 138 296 -16 830 216 26 5 chr11 19179834 19180024 -129603448 + LTR24B LTR ERV1 264 457 -119 567 95 0 0 chr11 19180027 19180111 -129603361 - L1M4 LINE L1 -451 5727 5644 408 180 84 11 chr11 19180390 19180490 -129602982 + LTR24 LTR ERV1 370 467 0 280 242 30 0 chr11 19180662 19180728 -129602744 + Charlie8 DNA MER1_type 2342 2409 -8 2204 99 3 10 chr11 19180979 19181273 -129602199 + AluSx SINE Alu 1 292 -20 2348 107 0 0 chr11 19181650 19181950 -129601522 + AluSc SINE Alu 2 301 -8 2354 92 3 0 chr11 19181955 19182249 -129601223 + AluSc SINE Alu 1 295 -14 908 129 0 102 chr11 19182568 19182754 -129600718 - AluSg/x SINE Alu 0 310 144 262 345 0 40 chr11 19182823 19183000 -129600472 + CT-rich Low_complexity Low_complexity 1 170 0 1460 199 60 3 chr11 19183357 19183704 -129599768 - L1ME3A LINE L1 -160 6010 5644 203 61 30 0 chr11 19183711 19183744 -129599728 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 2147 114 0 10 chr11 19183746 19183900 -129599572 - AluSx SINE Alu -25 287 136 2422 86 0 0 chr11 19183900 19184201 -129599271 - AluSx SINE Alu -11 301 1 2147 114 0 10 chr11 19184201 19184336 -129599136 - AluSx SINE Alu -176 136 1 3413 140 37 3 chr11 19184336 19184906 -129598566 + Tigger2 DNA MER2_type 2130 2718 0 1347 193 81 19 chr11 19184906 19185228 -129598244 - MLT1A2 LTR MaLR -32 342 1 280 279 238 7 chr11 19185307 19185454 -129598018 + L3 LINE CR1 796 976 -601 2376 66 42 0 chr11 19185484 19185772 -129597700 - AluSx SINE Alu -12 300 1 2188 99 0 54 chr11 19186107 19186421 -129597051 - AluSq SINE Alu -16 297 1 468 305 58 46 chr11 19186570 19186918 -129596554 + L2 LINE L2 2553 2904 -410 2378 104 0 0 chr11 19186965 19187272 -129596200 - AluSg SINE Alu -3 307 1 2120 133 0 0 chr11 19187522 19187807 -129595665 + AluSx SINE Alu 1 285 -27 457 313 50 16 chr11 19187898 19188080 -129595392 - MER5A DNA MER1_type 0 189 2 187 415 0 0 chr11 19188094 19188159 -129595313 - L3b LINE CR1 -82 1501 1437 2310 112 0 0 chr11 19188165 19188461 -129595011 - AluSc SINE Alu -13 296 1 481 279 56 19 chr11 19188465 19188626 -129594846 - MIR SINE MIR -6 256 90 2054 115 0 83 chr11 19189017 19189355 -129594117 - AluSx SINE Alu -2 310 1 2387 81 3 3 chr11 19189363 19189660 -129593812 - AluSg SINE Alu -13 297 1 691 142 0 0 chr11 19189683 19189789 -129593683 + FLAM_C SINE Alu 2 107 -36 3808 133 33 42 chr11 19189790 19190271 -129593201 + MER50 LTR ERV1 1 477 -257 2080 125 4 0 chr11 19190271 19190572 -129592900 + AluSx SINE Alu 1 302 0 3808 133 33 42 chr11 19190572 19190778 -129592694 + MER50 LTR ERV1 477 683 -51 720 197 0 0 chr11 19190845 19190977 -129592495 + FLAM_C SINE Alu 2 133 0 1962 112 31 7 chr11 19191018 19191305 -129592167 - AluSx SINE Alu -18 294 1 369 0 0 0 chr11 19191434 19191475 -129591997 + (TG)n Simple_repeat Simple_repeat 2 42 0 197 356 122 0 chr11 19191921 19192036 -129591436 + L2 LINE L2 3181 3309 -4 2314 94 7 0 chr11 19192050 19192336 -129591136 - AluSp SINE Alu -25 288 1 3453 130 37 64 chr11 19192954 19193156 -129590316 + MER41B LTR ERV1 1 207 -428 2259 139 0 0 chr11 19193156 19193465 -129590007 + AluSx SINE Alu 1 309 -3 3453 130 37 64 chr11 19193465 19193915 -129589557 + MER41B LTR ERV1 207 635 0 3614 129 49 43 chr11 19193915 19194633 -129588839 + MER41B-int LTR ERV1 1 827 -5119 1068 120 0 115 chr11 19194633 19194833 -129588639 - AluSp SINE Alu 0 313 137 25277 111 33 55 chr11 19194834 19197618 -129585854 + MER41B-int LTR ERV1 817 3660 -2286 2435 97 0 0 chr11 19197618 19197916 -129585556 + AluSq SINE Alu 1 298 -15 25277 111 33 55 chr11 19197916 19198060 -129585412 + MER41B-int LTR ERV1 3660 3806 -2140 2228 112 3 3 chr11 19198060 19198356 -129585116 + AluSx SINE Alu 1 296 -16 2230 118 10 3 chr11 19198361 19198667 -129584805 + AluSg SINE Alu 1 308 -2 25277 111 33 55 chr11 19198667 19199402 -129584070 + MER41B-int LTR ERV1 3810 4375 -1571 2160 126 0 0 chr11 19199402 19199708 -129583764 - AluSx SINE Alu 0 306 1 25277 111 33 55 chr11 19199708 19200520 -129582952 + MER41B-int LTR ERV1 4375 5203 -743 2586 66 0 7 chr11 19200520 19200823 -129582649 + AluY SINE Alu 1 301 -10 1286 118 0 0 chr11 19200823 19200993 -129582479 + AluYa5 SINE Alu 133 302 -9 2175 120 3 3 chr11 19201004 19201305 -129582167 + AluSg SINE Alu 1 301 -9 306 167 33 0 chr11 19201305 19201365 -129582107 + AluSp SINE Alu 134 195 -108 849 108 108 0 chr11 19201448 19201568 -129581904 - AluSq/x SINE Alu -180 133 1 2052 155 0 16 chr11 19201778 19202095 -129581377 + AluJb SINE Alu 1 312 0 2249 96 7 3 chr11 19202160 19202453 -129581019 + AluY SINE Alu 2 295 -16 392 232 89 36 chr11 19202453 19202565 -129580907 + MIR SINE MIR 14 131 -131 682 104 0 19 chr11 19202628 19202734 -129580738 - AluSg/x SINE Alu -4 308 205 560 170 57 0 chr11 19205377 19205483 -129577989 + MER103 DNA DNA 55 166 0 1378 124 9 0 chr11 19205486 19205711 -129577761 - L1PA16 LINE L1 0 6166 5940 419 315 0 8 chr11 19205841 19205971 -129577501 + MIR SINE MIR 18 146 -62 455 197 111 26 chr11 19206906 19207023 -129576449 + MIR SINE MIR 88 214 -48 2362 87 7 0 chr11 19208378 19208678 -129574794 - AluSq SINE Alu -9 304 3 241 316 26 0 chr11 19208930 19209006 -129574466 - L2 LINE L2 -181 3091 3014 181 217 22 0 chr11 19209131 19209177 -129574295 - L2 LINE L2 -1 3312 3266 273 317 0 24 chr11 19209191 19209273 -129574199 - MIR SINE MIR 0 262 183 421 250 83 15 chr11 19209815 19209947 -129573525 - MIR SINE MIR -121 141 1 325 307 33 26 chr11 19210002 19210155 -129573317 + L3 LINE CR1 1410 1563 -14 292 314 197 0 chr11 19210815 19210952 -129572520 - L2 LINE L2 -2 3270 3107 218 299 13 39 chr11 19210999 19211076 -129572396 + L2 LINE L2 3225 3299 -14 734 129 0 24 chr11 19211087 19211211 -129572261 - FLAM_C SINE Alu -20 123 3 357 312 76 57 chr11 19211407 19211583 -129571889 + L2 LINE L2 2597 2781 -533 1530 96 200 20 chr11 19211583 19211833 -129571639 - AluSg1 SINE Alu -14 295 1 357 312 76 57 chr11 19211833 19211919 -129571553 + L2 LINE L2 2781 2864 -450 492 285 93 28 chr11 19212262 19212476 -129570996 - MIR SINE MIR -33 229 2 193 298 35 0 chr11 19212513 19212570 -129570902 - MIR3 SINE MIR -49 159 101 1413 159 14 67 chr11 19212733 19213016 -129570456 + AluJo SINE Alu 1 268 -44 377 294 34 45 chr11 19213178 19213355 -129570117 - MIR SINE MIR -21 241 67 318 341 81 6 chr11 19214200 19214373 -129569099 - MIR SINE MIR -75 187 2 223 286 227 0 chr11 19214434 19214553 -129568919 - MIR SINE MIR -77 185 40 268 141 50 40 chr11 19216039 19216138 -129567334 + (TATATG)n Simple_repeat Simple_repeat 2 101 0 336 240 62 10 chr11 19216153 19216249 -129567223 - L1MC4 LINE L1 -1333 6709 6609 271 361 23 8 chr11 19216275 19216408 -129567064 - L2 LINE L2 -219 3053 2919 229 302 19 66 chr11 19216581 19216619 -129566853 - L2 LINE L2 -536 2778 2740 1611 150 144 6 chr11 19216619 19216939 -129566533 - MLT1A1 LTR MaLR 0 365 2 229 302 19 66 chr11 19216939 19217006 -129566466 - L2 LINE L2 -574 2740 2678 2190 80 18 4 chr11 19220163 19220462 -129563010 + AluSg SINE Alu 1 303 0 252 233 67 0 chr11 19221538 19221598 -129561874 + MIR SINE MIR 82 145 -63 2350 99 0 3 chr11 19221619 19221921 -129561551 + AluSg SINE Alu 1 301 -9 1718 138 0 0 chr11 19221931 19222170 -129561302 + AluSx SINE Alu 1 239 -73 400 240 35 76 chr11 19222219 19222390 -129561082 + L1MC4a LINE L1 5807 5970 -1838 237 274 107 0 chr11 19222669 19222753 -129560719 - L3b LINE CR1 -150 1433 1341 327 217 181 108 chr11 19224041 19224207 -129559265 + MER5B DNA MER1_type 1 178 0 941 256 152 0 chr11 19224208 19224485 -129558987 - MER102b DNA MER1_type -21 320 2 359 307 0 24 chr11 19224528 19224655 -129558817 + MIR SINE MIR 124 247 -15 186 156 0 0 chr11 19226584 19226616 -129556856 - L2 LINE L2 -2 3270 3239 270 295 95 19 chr11 19226641 19226746 -129556726 + L2 LINE L2 3155 3267 -5 214 333 65 0 chr11 19226752 19226860 -129556612 - L2 LINE L2 -41 3231 3117 449 204 83 89 chr11 19227843 19227890 -129555582 + MIR SINE MIR 24 70 -192 2219 98 0 71 chr11 19227890 19228215 -129555257 + AluSx SINE Alu 1 302 -10 449 204 83 89 chr11 19228215 19228324 -129555148 + MIR SINE MIR 70 179 -83 372 323 15 8 chr11 19228876 19229006 -129554466 + MIR3 SINE MIR 46 176 -32 870 186 95 59 chr11 19229628 19229660 -129553812 + MIR SINE MIR 4 33 -229 1214 190 124 29 chr11 19229660 19229934 -129553538 + AluSg SINE Alu 1 300 -10 870 186 95 59 chr11 19229934 19230122 -129553350 + MIR SINE MIR 33 232 -30 201 356 153 17 chr11 19230695 19230813 -129552659 - L2 LINE L2 -6 3266 3133 235 301 39 39 chr11 19231251 19231354 -129552118 - L2 LINE L2 -285 2987 2885 * 440 223 14 72 chr11 19231335 19231474 -129551998 - MIR3 SINE MIR -20 188 58 5151 226 5 11 chr11 19331623 19332960 -129450512 - L1 LINE L1 -1909 4237 2909 222 300 29 0 chr11 19333196 19333266 -129450206 + L2 LINE L2 3242 3313 0 264 366 22 0 chr11 19333887 19334021 -129449451 - MIR SINE MIR -63 199 63 246 341 12 0 chr11 19334613 19334698 -129448774 - MIR3 SINE MIR -38 170 85 3549 93 17 0 chr11 19334978 19335564 -129447908 + L1PB1 LINE L1 5197 5791 -360 344 132 29 0 chr11 19335569 19335637 -129447835 + (TATATG)n Simple_repeat Simple_repeat 5 74 0 2718 83 3 0 chr11 19335652 19336014 -129447458 + L1PB1 LINE L1 5787 6149 -2 660 297 56 43 chr11 19337089 19337369 -129446103 - LTR33 LTR ERVL -21 500 210 2449 138 31 14 chr11 19337369 19337790 -129445682 + MSTA LTR MaLR 1 428 0 660 297 56 43 chr11 19337790 19337973 -129445499 - LTR33 LTR ERVL -311 210 31 919 284 9 24 chr11 19338258 19338596 -129444876 - MER2 DNA MER2_type 0 345 13 291 312 80 16 chr11 19340245 19340370 -129443102 - MIR SINE MIR -109 153 21 240 316 26 0 chr11 19340675 19340751 -129442721 + L2 LINE L2 3236 3313 0 369 299 108 6 chr11 19341372 19341529 -129441943 - MIR SINE MIR -75 187 15 246 296 25 25 chr11 19342018 19342099 -129441373 + L2 LINE L2 3179 3259 -54 239 311 48 19 chr11 19342107 19342215 -129441257 - MIR3 SINE MIR -37 171 58 391 289 32 32 chr11 19342409 19342596 -129440876 + MLT1J LTR MaLR 94 280 -231 1630 194 6 23 chr11 19342701 19343051 -129440421 + MER2 DNA MER2_type 1 344 0 991 316 52 10 chr11 19343324 19343809 -129439663 + LTR33 LTR ERVL 7 511 -10 7389 36 6 0 chr11 19344753 19346261 -129437211 + L1PA4 LINE L1 4641 6153 -2 504 78 0 0 chr11 19347748 19347825 -129435647 - L1PB1 LINE L1 0 6151 6075 3916 88 29 2 chr11 19347907 19348489 -129434983 - L1PB1 LINE L1 -69 6082 5485 26 30 0 0 chr11 19349650 19349683 -129433789 + AT_rich Low_complexity Low_complexity 1 33 0 396 261 60 55 chr11 19349958 19350157 -129433315 - L2 LINE L2 -1481 1833 1634 197 319 50 67 chr11 19350680 19350705 -129432767 - L2 LINE L2 -9 3304 3280 1503 189 107 14 chr11 19350705 19351060 -129432412 + MLT1B LTR MaLR 1 388 -2 197 319 50 67 chr11 19351060 19351153 -129432319 - L2 LINE L2 -33 3280 3188 239 271 62 35 chr11 19351439 19351583 -129431889 - L2 LINE L2 -1348 1966 1819 640 299 81 41 chr11 19352309 19352674 -129430798 + L1MC4a LINE L1 5302 5651 -2157 228 35 0 0 chr11 19352674 19352703 -129430769 + (TA)n Simple_repeat Simple_repeat 2 30 0 640 299 81 41 chr11 19352703 19352852 -129430620 + L1MC4a LINE L1 5651 5844 -1964 1806 186 3 0 chr11 19352852 19353163 -129430309 + AluJo SINE Alu 1 312 0 640 299 81 41 chr11 19353163 19353228 -129430244 + L1MC4a LINE L1 5844 5905 -1903 473 32 16 0 chr11 19353244 19353307 -129430165 + (TA)n Simple_repeat Simple_repeat 1 64 0 53 40 0 0 chr11 19353472 19353546 -129429926 + AT_rich Low_complexity Low_complexity 1 74 0 1031 287 123 38 chr11 19353655 19354320 -129429152 - L2 LINE L2 -1469 1845 1124 2672 242 48 42 chr11 19354323 19355337 -129428135 + L1MD2 LINE L1 5325 6344 -15 307 274 48 0 chr11 19355339 19355423 -129428049 - L2 LINE L2 -2577 737 650 213 39 0 0 chr11 19357494 19357520 -129425952 + (TGAG)n Simple_repeat Simple_repeat 2 27 0 4773 75 11 5 chr11 19357817 19358509 -129424963 - L1PA8 LINE L1 -6 6166 5437 * 5329 106 13 1 chr11 19358502 19359383 -129424089 + L1P LINE L1 4541 5429 -702 183 220 140 0 chr11 19359856 19359906 -129423566 + L2 LINE L2 3216 3272 0 1156 247 23 3 chr11 19361229 19361581 -129421891 - L1MB4 LINE L1 -1 6179 5821 349 289 114 30 chr11 19363616 19363782 -129419690 - MIR SINE MIR -62 200 21 219 314 29 0 chr11 19364102 19364172 -129419300 + L2 LINE L2 3242 3313 0 237 395 12 12 chr11 19364943 19365029 -129418443 + L2 LINE L2 3134 3219 -53 232 367 70 0 chr11 19365036 19365194 -129418278 - MIR3 SINE MIR -37 171 3 331 293 102 59 chr11 19365271 19365527 -129417945 + MLT1J LTR MaLR 7 273 -238 1448 216 6 29 chr11 19365641 19365992 -129417480 + MER2 DNA MER2_type 1 343 -1 889 312 78 19 chr11 19366283 19366745 -129416727 + LTR33 LTR ERVL 31 519 -2 28880 119 13 53 chr11 19367561 19373629 -129409843 - L1PA7 LINE L1 -327 5827 12 20239 106 17 29 chr11 19373642 19375756 -129407716 + L1PA8 LINE L1 1862 3999 -2173 5477 150 27 18 chr11 19375756 19376716 -129406756 + LTR5 LTR ERVK 1 969 0 20239 106 17 29 chr11 19376716 19378051 -129405421 + L1PA8 LINE L1 3999 5268 -904 2292 109 0 7 chr11 19378051 19378354 -129405118 - AluSx SINE Alu -11 301 1 20239 106 17 29 chr11 19378354 19379243 -129404229 + L1PA8 LINE L1 5268 6166 -6 1470 225 42 98 chr11 19379236 19379943 -129403529 + L1MD2 LINE L1 5679 6346 -13 * 248 242 22 33 chr11 19379945 19380036 -129403436 - L2 LINE L2 -2577 737 648 21 0 0 0 chr11 19381063 19381084 -129402388 + AT_rich Low_complexity Low_complexity 1 21 0 2403 70 0 0 chr11 19382027 19382311 -129401161 - AluY SINE Alu -26 285 2 205 275 156 46 chr11 19382503 19382612 -129400860 + L2 LINE L2 3139 3259 -13 242 328 0 15 chr11 19383850 19383917 -129399555 - L2 LINE L2 -86 3186 3121 1301 248 17 0 chr11 19384711 19385062 -129398410 - L1MB4 LINE L1 0 6180 5824 199 359 57 0 chr11 19387092 19387198 -129396274 - MIR SINE MIR -62 200 89 194 286 43 14 chr11 19387585 19387655 -129395817 + L2 LINE L2 3242 3313 0 238 301 49 8 chr11 19388250 19388373 -129395099 - MIR SINE MIR -37 225 98 238 357 70 19 chr11 19389010 19389167 -129394305 - MIR3 SINE MIR -37 171 7 368 309 127 45 chr11 19389227 19389541 -129393931 + MLT1J LTR MaLR 4 343 -168 1237 264 9 23 chr11 19389596 19389944 -129393528 + MER2 DNA MER2_type 2 344 0 970 289 65 40 chr11 19390233 19390418 -129393054 + LTR33 LTR ERVL 31 210 -311 2707 143 29 7 chr11 19390418 19390837 -129392635 - MSTA LTR MaLR 0 428 1 970 289 65 40 chr11 19390837 19391128 -129392344 + LTR33 LTR ERVL 210 519 -2 1002 169 0 6 chr11 19391812 19391978 -129391494 + Tigger1 DNA MER2_type 1913 2077 -341 212 57 0 29 chr11 19391986 19392021 -129391451 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 7711 24 6 4 chr11 19392021 19393186 -129390286 - L1PA3 LINE L1 -24 6131 4965 1365 212 72 0 chr11 19393186 19393493 -129389979 + Tigger1 DNA MER2_type 2089 2417 -1 1733 180 0 0 chr11 19393849 19394138 -129389334 + AluJb SINE Alu 24 312 0 195 129 0 0 chr11 19394142 19394173 -129389299 + (A)n Simple_repeat Simple_repeat 1 31 0 1391 183 95 0 chr11 19394224 19394487 -129388985 + AluSx SINE Alu 1 288 -24 25 0 0 0 chr11 19394487 19394512 -129388960 + AT_rich Low_complexity Low_complexity 1 25 0 1024 289 88 24 chr11 19394588 19395176 -129388296 + L1MC4a LINE L1 5286 5911 -1897 1051 301 103 38 chr11 19395424 19396091 -129387381 - L2 LINE L2 -1482 1832 1122 1018 274 72 3 chr11 19396091 19396438 -129387034 + L1MD2 LINE L1 5324 5694 -665 * 16233 160 12 110 chr11 19396435 19399078 -129384394 + L1PA8 LINE L1 2 2122 -4024 181 0 33 33 chr11 19399078 19399108 -129384364 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 16233 160 12 110 chr11 19399108 19400475 -129382997 + L1PA8 LINE L1 2122 3621 -2525 12641 112 7 3 chr11 19400575 19403139 -129380333 + L1PA8 LINE L1 3595 6165 -7 1761 223 52 100 chr11 19403141 19403849 -129379623 + L1MD2 LINE L1 5685 6358 -1 241 250 26 26 chr11 19403869 19403945 -129379527 - L2 LINE L2 -2605 709 634 199 313 139 17 chr11 19406068 19406183 -129377289 + L2 LINE L2 3140 3268 -4 1028 219 48 10 chr11 19408260 19408552 -129374920 - L1MB4 LINE L1 0 6180 5878 180 372 108 0 chr11 19411628 19411776 -129371696 - MIR SINE MIR -63 199 36 232 414 23 0 chr11 19412275 19412362 -129371110 + L2 LINE L2 3132 3220 -52 215 337 12 0 chr11 19412368 19412454 -129371018 - MIR3 SINE MIR -37 171 85 252 326 82 0 chr11 19412679 19412777 -129370695 + MLT1J2 LTR MaLR 67 172 -278 1203 251 6 26 chr11 19413017 19413328 -129370144 + MER2 DNA MER2_type 41 345 0 898 293 68 41 chr11 19413617 19413801 -129369671 + LTR33 LTR ERVL 31 208 -313 2651 142 39 7 chr11 19413801 19414216 -129369256 - MSTA LTR MaLR 0 428 1 898 293 68 41 chr11 19414216 19414499 -129368973 + LTR33 LTR ERVL 208 511 -10 2497 184 41 6 chr11 19415200 19415688 -129367784 + Tigger1 DNA MER2_type 1913 2417 -1 1596 202 10 0 chr11 19415969 19416261 -129367211 + AluJb SINE Alu 1 295 -17 1905 158 3 0 chr11 19416315 19416606 -129366866 + AluSx SINE Alu 1 292 -20 26 0 0 0 chr11 19416610 19416636 -129366836 + AT_rich Low_complexity Low_complexity 1 26 0 1089 289 84 15 chr11 19416766 19417299 -129366173 + L1MC4a LINE L1 5342 5911 -1897 27 29 0 0 chr11 19417299 19417333 -129366139 + AT_rich Low_complexity Low_complexity 1 34 0 1094 305 113 21 chr11 19417550 19418203 -129365269 - L2 LINE L2 -1480 1834 1122 1018 274 72 3 chr11 19418203 19418550 -129364922 + L1MD2 LINE L1 5324 5694 -665 * 27106 184 45 20 chr11 19418547 19423896 -129359576 + L1P3 LINE L1 2 5487 -667 1170 72 0 0 chr11 19423896 19424034 -129359438 + AluY SINE Alu 1 138 -173 5273 97 0 0 chr11 19424048 19424738 -129358734 + L1PA8 LINE L1 5476 6165 -7 1525 230 46 104 chr11 19424738 19425444 -129358028 + L1MD2 LINE L1 5685 6349 -10 371 270 10 10 chr11 19425448 19425548 -129357924 - L2 LINE L2 -2581 733 634 233 342 120 17 chr11 19427734 19427851 -129355621 + L2 LINE L2 3139 3267 -5 216 328 131 8 chr11 19429022 19429144 -129354328 - L2 LINE L2 -15 3257 3121 1330 224 29 6 chr11 19429958 19430306 -129353166 - L1MB4 LINE L1 0 6180 5825 181 343 67 0 chr11 19432312 19432417 -129351055 - MIR SINE MIR -62 200 89 222 300 29 0 chr11 19432805 19432875 -129350597 + L2 LINE L2 3242 3313 0 268 374 11 11 chr11 19434139 19434230 -129349242 + L2 LINE L2 3129 3219 -53 219 333 42 60 chr11 19434237 19434405 -129349067 - MIR3 SINE MIR -37 171 7 243 348 34 28 chr11 19434533 19434711 -129348761 + MLT1J LTR MaLR 94 272 -239 745 279 7 35 chr11 19434963 19435253 -129348219 + MER2 DNA MER2_type 63 344 -1 731 309 58 32 chr11 19435549 19435728 -129347744 + LTR33 LTR ERVL 37 210 -311 2245 169 26 9 chr11 19435728 19436148 -129347324 - MSTA LTR MaLR -1 427 1 731 309 58 32 chr11 19436148 19436431 -129347041 + LTR33 LTR ERVL 210 511 -10 2399 185 39 2 chr11 19437135 19437622 -129345850 + Tigger1 DNA MER2_type 1913 2417 -1 21 0 0 0 chr11 19437875 19437896 -129345576 + AT_rich Low_complexity Low_complexity 1 21 0 1415 196 0 0 chr11 19437915 19438155 -129345317 + AluJb SINE Alu 11 250 -62 1960 140 3 7 chr11 19438304 19438597 -129344875 + AluSx SINE Alu 1 292 -20 30 0 0 0 chr11 19438597 19438627 -129344845 + AT_rich Low_complexity Low_complexity 1 30 0 888 286 83 22 chr11 19438714 19439294 -129344178 + L1MC4a LINE L1 5297 5911 -1897 27 62 0 0 chr11 19439296 19439344 -129344128 + AT_rich Low_complexity Low_complexity 1 48 0 1169 306 118 16 chr11 19439555 19440193 -129343279 - L2 LINE L2 -1490 1824 1122 2224 234 70 73 chr11 19440193 19441219 -129342253 + L1MD2 LINE L1 5324 6346 -13 263 320 19 10 chr11 19441221 19441324 -129342148 - L2 LINE L2 -2577 737 634 207 0 0 0 chr11 19441889 19441912 -129341560 + (TTA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr11 19441912 19441933 -129341539 + AT_rich Low_complexity Low_complexity 1 21 0 236 275 156 46 chr11 19443525 19443634 -129339838 + L2 LINE L2 3139 3259 -13 184 345 133 26 chr11 19444816 19444929 -129338543 - L2 LINE L2 -15 3257 3133 971 238 41 6 chr11 19445749 19446093 -129337379 - L1MB4 LINE L1 0 6180 5825 2236 215 16 2 chr11 19447786 19448294 -129335178 - L1 LINE L1 -3237 2909 2395 1670 121 15 134 chr11 19448303 19448692 -129334780 + LTR3b LTR ERVK 158 500 0 361 225 139 96 chr11 19449014 19449223 -129334249 + HERVK3 LTR ERVK 55 272 -6971 265 236 0 79 chr11 19449287 19449376 -129334096 + HERVK3 LTR ERVK 586 667 -6576 3909 221 68 8 chr11 19449380 19450312 -129333160 + HERVK3 LTR ERVK 1321 2308 -4935 2443 129 9 46 chr11 19450313 19450833 -129332639 + HERVK3 LTR ERVK 2996 5572 -373 1276 153 9 5 chr11 19450833 19451049 -129332423 + PRIMA41-int LTR ERV1 7540 7756 0 * 1355 87 11 0 chr11 19450866 19451051 -129332421 + HERVK3 LTR ERVK 5575 5761 -184 338 168 0 19 chr11 19451053 19451124 -129332348 + MER41C LTR ERV1 5 61 -493 436 0 0 0 chr11 19451124 19451174 -129332298 + HERVK14 LTR ERVK 5835 5884 -61 1630 153 52 9 chr11 19451196 19451522 -129331950 + LTR3b LTR ERVK 158 497 -3 564 90 0 0 chr11 19451522 19451600 -129331872 + LTR3b LTR ERVK 423 500 0 319 131 54 161 chr11 19451612 19451742 -129331730 - L1 LINE L1 -3756 2390 2275 * 13004 114 62 22 chr11 19451741 19454071 -129329401 - L1PBa LINE L1 -3999 2864 443 1686 135 74 37 chr11 19454084 19454409 -129329063 - LTR10A LTR ERV1 -61 548 212 24 0 0 0 chr11 19455076 19455100 -129328372 + AT_rich Low_complexity Low_complexity 1 24 0 1580 109 8 0 chr11 19455103 19455351 -129328121 - L1MA1 LINE L1 -4 7717 7468 31096 70 15 8 chr11 19455353 19460624 -129322848 - L1PA6 LINE L1 -4 6150 847 618 102 0 0 chr11 19460622 19460710 -129322762 - L1PA6 LINE L1 -6048 98 11 * 4946 113 30 19 chr11 19460720 19461744 -129321728 - L1MA1 LINE L1 -229 7492 6458 * 17121 177 65 12 chr11 19461711 19467369 -129316103 - L1MA1 LINE L1 -1588 5977 13 9963 157 50 4 chr11 19467371 19469246 -129314226 + Tigger1 DNA MER2_type 4 1963 -455 1627 96 50 27 chr11 19469259 19469474 -129313998 - L1PA14 LINE L1 -4 6157 5933 8492 64 5 1 chr11 19469474 19470541 -129312931 - MER11C LTR ERVK 0 1071 1 1627 96 50 27 chr11 19470541 19470586 -129312886 - L1PA14 LINE L1 -228 5933 5891 1811 133 77 9 chr11 19470586 19470904 -129312568 + THE1C LTR MaLR 1 340 -35 1426 138 40 28 chr11 19470904 19471157 -129312315 - THE1B LTR MaLR 0 364 109 1215 149 37 97 chr11 19471147 19471468 -129312004 + THE1C LTR MaLR 74 375 0 * 9809 118 24 37 chr11 19471471 19473069 -129310403 + THE1C-int LTR MaLR 4 1580 0 1626 148 50 78 chr11 19473071 19473455 -129310017 + THE1C LTR MaLR 3 375 0 646 214 0 0 chr11 19473470 19473596 -129309876 + Tigger1 DNA MER2_type 1950 2075 -343 1838 159 11 0 chr11 19473596 19473941 -129309531 - AluJb SINE Alu 0 348 1 1357 154 16 4 chr11 19473942 19474188 -129309284 + Tigger1 DNA MER2_type 2064 2312 -106 13618 195 32 14 chr11 19474206 19479008 -129304464 - L1PB1 LINE L1 -8 6859 1760 2301 112 0 0 chr11 19479008 19479303 -129304169 - AluSc SINE Alu -14 295 1 13618 195 32 14 chr11 19479303 19480319 -129303153 - L1PB1 LINE L1 -5107 1760 765 1166 258 53 43 chr11 19480317 19480848 -129302624 - L1PB1 LINE L1 -6312 551 16 * 875 252 22 6 chr11 19480849 19481171 -129302301 - L1M4 LINE L1 -842 5304 4978 * 3182 228 60 45 chr11 19481166 19481577 -129301895 - L1M4 LINE L1 -2684 3462 3059 840 93 16 0 chr11 19481577 19481706 -129301766 - L1PA13 LINE L1 -5 6158 6028 3182 228 60 45 chr11 19481706 19482525 -129300947 - L1M4 LINE L1 -3087 3059 2213 499 306 35 26 chr11 19482628 19482857 -129300615 - MIR SINE MIR -28 234 4 198 369 0 0 chr11 19483345 19483410 -129300062 - MIR SINE MIR -101 107 43 496 277 19 52 chr11 19484215 19484370 -129299102 + MIR3 SINE MIR 48 197 -11 282 287 58 0 chr11 19485047 19485134 -129298338 + L3 LINE CR1 1402 1493 -84 253 299 165 0 chr11 19485171 19485268 -129298204 - L2 LINE L2 -21 3251 3139 22 35 0 0 chr11 19485343 19485372 -129298100 + AT_rich Low_complexity Low_complexity 1 29 0 259 348 68 0 chr11 19485654 19485772 -129297700 - MIR3 SINE MIR -29 179 54 511 234 16 35 chr11 19486348 19486528 -129296944 + MLT1I LTR MaLR 276 407 -2 324 333 69 23 chr11 19486841 19487015 -129296457 - MER5A DNA MER1_type 0 189 8 1229 285 31 29 chr11 19487098 19487547 -129295925 - LTR16A1 LTR ERVL -2 455 6 2415 186 86 49 chr11 19487631 19488224 -129295248 - L1MB7 LINE L1 -58 6126 5512 917 322 10 3 chr11 19488228 19488517 -129294955 - HERV16 LTR ERVL -2473 3181 2891 1333 314 74 35 chr11 19488527 19489294 -129294178 - HERV16 LTR ERVL -2640 2356 1781 392 218 0 0 chr11 19489324 19489411 -129294061 - L1MC4 LINE L1 0 8042 7956 * 1967 229 98 24 chr11 19489403 19489935 -129293537 - L1MC4 LINE L1 -306 7736 7166 475 281 14 13 chr11 19490368 19490528 -129292944 - L1M4 LINE L1 -5722 924 543 531 252 95 21 chr11 19490814 19491056 -129292416 - L1M4 LINE L1 -6282 260 1 662 143 45 30 chr11 19491107 19491240 -129292232 - L1MA7 LINE L1 -220 6071 5937 937 292 44 49 chr11 19491373 19491804 -129291668 + LTR33 LTR ERVL 93 521 0 2099 161 138 5 chr11 19492724 19493102 -129290370 - MSTA LTR MaLR 0 428 1 904 336 90 4 chr11 19493304 19493792 -129289680 - L2 LINE L2 -2133 1181 652 13687 88 1 0 chr11 19494003 19495836 -129287636 - L1P LINE L1 -925 5221 3388 2709 20 43 0 chr11 19496249 19496554 -129286918 - AluYb8 SINE Alu 0 318 1 258 289 174 0 chr11 19496589 19496710 -129286762 - MIR3 SINE MIR -23 185 44 199 319 28 14 chr11 19496989 19497061 -129286411 - L2 LINE L2 -219 3053 2981 1352 69 126 0 chr11 19497262 19497409 -129286063 + MER107 DNA MER1_type 1 175 -22 262 67 44 0 chr11 19497409 19497454 -129286018 + (CAA)n Simple_repeat Simple_repeat 2 48 0 1352 69 126 0 chr11 19497454 19497481 -129285991 + MER107 DNA MER1_type 175 197 0 288 295 11 21 chr11 19497647 19497742 -129285730 - MIR SINE MIR -50 212 119 1744 218 71 52 chr11 19498043 19498539 -129284933 + MLT1D LTR MaLR 1 505 0 2494 160 67 0 chr11 19498615 19499016 -129284456 - MSTA LTR MaLR 0 428 1 253 182 11 171 chr11 19499884 19499972 -129283500 - MIR3 SINE MIR -24 184 111 432 37 0 0 chr11 19500075 19500129 -129283343 + (CA)n Simple_repeat Simple_repeat 2 55 0 23 86 0 0 chr11 19500437 19500495 -129282977 + AT_rich Low_complexity Low_complexity 1 58 0 2599 168 10 57 chr11 19500926 19501207 -129282265 + MER54A LTR ERVL 1 249 -652 2352 106 0 0 chr11 19501207 19501509 -129281963 - AluSx SINE Alu -10 302 1 2599 168 10 57 chr11 19501509 19501734 -129281738 + MER54A LTR ERVL 249 483 -418 1700 160 50 6 chr11 19501735 19502053 -129281419 + L1MA4 LINE L1 5953 6284 -16 2105 137 28 0 chr11 19503139 19503460 -129280012 - L1PB1 LINE L1 -2 6149 5820 4404 242 67 35 chr11 19503769 19504322 -129279150 + L1MC2 LINE L1 888 1422 -5004 7768 45 6 0 chr11 19504322 19505592 -129277880 - L1PA5 LINE L1 -3 6151 4879 4404 242 67 35 chr11 19505592 19507109 -129276363 + L1MC2 LINE L1 1422 3233 -3193 2264 122 0 0 chr11 19507109 19507420 -129276052 + AluSx SINE Alu 1 311 -1 4404 242 67 35 chr11 19507420 19508182 -129275290 + L1MC2 LINE L1 3233 3969 -2457 934 248 16 16 chr11 19508224 19508478 -129274994 + MER74B LTR ERVL 59 312 -310 3792 212 14 14 chr11 19508479 19509420 -129274052 + L1MC2 LINE L1 5427 6364 -260 8136 104 4 20 chr11 19509524 19510778 -129272694 - L1MEc LINE L1 -2856 3359 2169 342 309 77 50 chr11 19510746 19511164 -129272308 - L1MEd LINE L1 -5244 875 447 * 211 62 0 62 chr11 19511166 19511214 -129272258 + (TTTTTG)n Simple_repeat Simple_repeat 3 47 0 214 299 52 26 chr11 19511621 19511698 -129271774 + MIR SINE MIR 66 144 -118 6054 150 12 32 chr11 19511908 19513269 -129270203 - L1MA5 LINE L1 -38 7283 5933 * 6596 179 26 15 chr11 19513266 19514631 -129268841 - L1MA5 LINE L1 -4710 2458 1056 253 310 52 0 chr11 19514652 19514768 -129268704 + MIR SINE MIR 75 196 -66 365 342 77 15 chr11 19514788 19514984 -129268488 + MIR SINE MIR 42 249 -13 796 186 41 0 chr11 19515505 19515650 -129267822 - FRAM SINE Alu -1 175 25 189 239 68 68 chr11 19515802 19515890 -129267582 + MIR SINE MIR 56 143 -119 195 204 0 0 chr11 19517126 19517170 -129266302 + L2 LINE L2 3182 3225 -88 221 279 0 44 chr11 19517191 19517259 -129266213 - L2 LINE L2 0 3313 3249 241 318 32 48 chr11 19517557 19517683 -129265789 + MIR SINE MIR 25 148 -114 2562 200 31 82 chr11 19517684 19518332 -129265140 + LTR9 LTR ERV1 1 793 -1 894 181 42 0 chr11 19518584 19518750 -129264722 - MIR SINE MIR -21 241 69 2405 97 0 0 chr11 19518770 19519070 -129264402 + AluSx SINE Alu 1 300 -12 809 301 96 22 chr11 19519850 19520216 -129263256 - L2 LINE L2 0 3313 2921 533 256 181 30 chr11 19520277 19520547 -129262925 - L2 LINE L2 -541 2773 2463 432 281 114 62 chr11 19520607 19521009 -129262463 + L2 LINE L2 2815 3237 -76 766 288 37 103 chr11 19522369 19522997 -129260475 - L1MEd LINE L1 -5249 870 285 468 323 95 13 chr11 19523162 19523320 -129260152 - MIR SINE MIR -78 184 14 207 320 134 17 chr11 19523367 19523539 -129259933 + L3 LINE CR1 1264 1455 -122 253 319 9 71 chr11 19524241 19524354 -129259118 - MIR SINE MIR -65 143 38 299 280 191 18 chr11 19524619 19524787 -129258685 + MIR SINE MIR 60 256 -6 519 226 187 22 chr11 19524855 19525065 -129258407 - MIR SINE MIR -9 253 17 477 319 38 5 chr11 19525103 19525288 -129258184 + MIR3 SINE MIR 7 197 -11 1137 243 6 54 chr11 19525705 19526022 -129257450 + AluSx SINE Alu 1 302 0 464 330 46 27 chr11 19526039 19526300 -129257172 + L1M3d LINE L1 6 271 -5620 427 324 88 49 chr11 19526275 19526479 -129256993 + L1M3de LINE L1 572 783 -5870 * 544 316 41 10 chr11 19526489 19526685 -129256787 + L1M3de LINE L1 814 1015 -5638 448 225 11 11 chr11 19526705 19526794 -129256678 + L1MA7 LINE L1 394 482 -6287 295 287 53 21 chr11 19526797 19526891 -129256581 + L1MA7 LINE L1 1035 1131 -5638 349 257 30 30 chr11 19526898 19526999 -129256473 + L1M4c LINE L1 382 482 -6287 432 280 0 20 chr11 19527008 19527108 -129256364 + L1M4c LINE L1 385 482 -6287 4359 229 26 24 chr11 19527146 19528142 -129255330 + L1M4c LINE L1 1076 2073 -4696 979 254 8 12 chr11 19528137 19528385 -129255087 + L1MA7 LINE L1 2350 2596 -4253 * 24504 162 28 26 chr11 19528386 19532349 -129251123 + L1PA10 LINE L1 1 4054 -2429 216 0 0 0 chr11 19532349 19532373 -129251099 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 24504 162 28 26 chr11 19532373 19534810 -129248662 + L1PA10 LINE L1 4054 6483 0 382 278 32 56 chr11 19534863 19535079 -129248393 + L1M4c LINE L1 2260 2470 -4378 715 225 26 45 chr11 19535091 19535403 -129248069 + L1M4c LINE L1 2522 2841 -4007 3081 228 68 10 chr11 19535413 19536323 -129247149 + L1M4c LINE L1 3146 4108 -2740 1427 103 0 0 chr11 19536323 19536508 -129246964 + AluSp SINE Alu 128 312 -1 9782 161 27 20 chr11 19536508 19538299 -129245173 + L1MA7 LINE L1 4097 5873 -1141 1148 149 0 61 chr11 19538299 19538527 -129244945 + L1MA6 LINE L1 6074 6287 -13 9782 161 27 20 chr11 19538527 19539443 -129244029 + L1MA7 LINE L1 5873 6780 -234 6502 103 17 0 chr11 19539443 19541003 -129242469 + L1PA14 LINE L1 4577 6159 -2 2696 112 2 25 chr11 19541003 19541397 -129242075 + L1PA14 LINE L1 5770 6161 0 9782 161 27 20 chr11 19541397 19541423 -129242049 + L1MA7 LINE L1 6780 6804 -210 1785 154 0 31 chr11 19541423 19541716 -129241756 + AluSx SINE Alu 7 290 -22 9782 161 27 20 chr11 19541716 19541731 -129241741 + L1MA7 LINE L1 6804 6817 -197 2116 73 8 0 chr11 19541731 19541992 -129241480 - L1PA10 LINE L1 -9 6159 5897 9782 161 27 20 chr11 19541992 19542137 -129241335 + L1MA7 LINE L1 6817 6981 -33 3479 211 47 18 chr11 19542155 19543099 -129240373 + L1ME2 LINE L1 5191 6163 -1 352 329 70 13 chr11 19545142 19545300 -129238172 - MIR SINE MIR -76 186 20 278 352 56 0 chr11 19545650 19545758 -129237714 + L2 LINE L2 3146 3259 -13 180 97 0 0 chr11 19545769 19545800 -129237672 + (CATG)n Simple_repeat Simple_repeat 1 31 0 681 282 31 5 chr11 19546413 19546608 -129236864 - MIR SINE MIR -48 214 15 2458 56 0 20 chr11 19547096 19547398 -129236074 - AluY SINE Alu -15 296 1 188 372 74 14 chr11 19547509 19547657 -129235815 - MIR3 SINE MIR -37 171 15 252 269 179 14 chr11 19547917 19548062 -129235410 + MLT1J LTR MaLR 227 395 -116 1073 234 79 89 chr11 19548536 19548929 -129234543 + LTR33 LTR ERVL 131 519 -2 249 302 17 35 chr11 19549886 19550002 -129233470 - HAL1b LINE L1 -452 896 783 183 80 0 0 chr11 19550117 19550142 -129233330 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 286 316 105 0 chr11 19550146 19550241 -129233231 - L2 LINE L2 -18 3295 3191 403 290 104 23 chr11 19550579 19550981 -129232491 - L1MEc LINE L1 -797 1693 1202 482 260 73 0 chr11 19551026 19551176 -129232296 + MIR SINE MIR 81 241 -21 728 219 118 32 chr11 19551178 19551457 -129232015 - L1MEc LINE L1 -4924 1195 893 320 291 71 31 chr11 19551818 19551945 -129231527 + L2 LINE L2 3140 3271 -1 1119 278 86 27 chr11 19552833 19553315 -129230157 + MLT1K LTR MaLR 16 586 -2 535 191 24 6 chr11 19553394 19553562 -129229910 + (TCCA)n Simple_repeat Simple_repeat 1 171 0 367 313 80 17 chr11 19554069 19554245 -129229227 - MIR3 SINE MIR -20 188 2 2514 52 0 10 chr11 19554351 19554656 -129228816 - AluY SINE Alu -1 310 9 3040 151 17 4 chr11 19555026 19555497 -129227975 - L1PA16 LINE L1 -1 6165 5689 1690 164 11 4 chr11 19555731 19556012 -129227460 - AluSx SINE Alu -29 283 1 315 261 165 0 chr11 19556219 19556334 -129227138 - L2 LINE L2 0 3313 3180 293 326 35 0 chr11 19556388 19556532 -129226940 - MIR3 SINE MIR 0 208 60 222 333 152 10 chr11 19556801 19556900 -129226572 - MIR SINE MIR -78 130 18 549 260 63 8 chr11 19557053 19557180 -129226292 + MER45A DNA AcHobo 1 134 -44 4292 133 29 2 chr11 19557395 19558013 -129225459 - MER41B LTR ERV1 0 635 1 2848 10 0 0 chr11 19558821 19559127 -129224345 + AluY SINE Alu 1 306 -5 235 280 121 92 chr11 19559129 19559475 -129223997 + L3 LINE CR1 1011 1366 -211 617 301 65 68 chr11 19559702 19560403 -129223069 + L2 LINE L2 2560 3270 -2 3057 187 93 73 chr11 19560853 19561497 -129221975 + L1MD2 LINE L1 4965 5594 -648 504 41 82 0 chr11 19561497 19561570 -129221902 - MADE1 DNA Mariner -1 79 1 3057 187 93 73 chr11 19561570 19562222 -129221250 + L1MD2 LINE L1 5594 6234 -8 257 243 135 0 chr11 19562293 19562367 -129221105 - L2 LINE L2 -1 3312 3229 307 258 21 75 chr11 19562400 19562493 -129220979 - MIR SINE MIR -147 115 28 775 211 0 0 chr11 19562725 19562858 -129220614 + FLAM_A SINE Alu 1 133 0 23 33 0 0 chr11 19562906 19562936 -129220536 + AT_rich Low_complexity Low_complexity 1 30 0 364 228 18 108 chr11 19564503 19564585 -129218887 - L1ME LINE L1 -439 5682 5621 2184 121 0 0 chr11 19564585 19564882 -129218590 + AluSx SINE Alu 2 298 -14 364 228 18 108 chr11 19564882 19564966 -129218506 - L1ME LINE L1 -500 5621 5531 390 275 22 29 chr11 19565204 19565342 -129218130 + MIR3 SINE MIR 4 140 -68 485 289 0 8 chr11 19566265 19566393 -129217079 + MLT1L LTR MaLR 114 240 -375 267 164 119 0 chr11 19566446 19566513 -129216959 + MLT1L LTR MaLR 405 479 -136 649 216 127 6 chr11 19567182 19567363 -129216109 + MIR SINE MIR 18 220 -42 629 299 74 22 chr11 19567579 19567810 -129215662 - MIR SINE MIR 0 262 20 1569 174 43 0 chr11 19567811 19568116 -129215356 - AluYb8 SINE Alu 0 318 1 1590 11 6 0 chr11 19568322 19568500 -129214972 - L1PA4 LINE L1 -220 5935 5757 446 288 139 0 chr11 19568811 19569002 -129214470 + MIR SINE MIR 33 249 -13 2443 48 3 35 chr11 19569006 19569319 -129214153 - AluY SINE Alu -8 303 1 216 250 47 16 chr11 19569509 19569573 -129213899 - L2 LINE L2 0 3272 3207 1369 166 0 0 chr11 19569689 19569900 -129213572 + AluSq SINE Alu 78 288 -25 1487 83 9 46 chr11 19570156 19570373 -129213099 - L1PA8A LINE L1 -1 6130 5922 342 0 0 0 chr11 19570387 19570425 -129213047 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 6449 32 7 1 chr11 19570425 19571150 -129212322 - L1PA4 LINE L1 -16 6139 5411 3140 18 3 8 chr11 19571150 19571536 -129211936 + L1PA4 LINE L1 5020 5403 -743 1735 151 30 0 chr11 19571657 19571950 -129211522 + AluJb SINE Alu 10 310 0 247 222 0 19 chr11 19571960 19572014 -129211458 + MIR3 SINE MIR 155 207 -1 241 286 24 12 chr11 19572269 19572353 -129211119 + MIR3 SINE MIR 115 199 -9 314 183 14 0 chr11 19574615 19574686 -129208786 + GA-rich Low_complexity Low_complexity 2 73 0 240 309 45 18 chr11 19574845 19574955 -129208517 + MIR SINE MIR 100 212 -50 328 233 23 23 chr11 19575486 19575572 -129207900 - MIR SINE MIR -118 144 59 309 242 135 94 chr11 19576180 19576424 -129207048 - MIR SINE MIR -3 259 6 270 327 44 6 chr11 19576601 19576760 -129206712 - L3 LINE CR1 -107 1470 1306 550 239 97 23 chr11 19576852 19577028 -129206444 + MIR SINE MIR 20 208 -54 499 294 31 25 chr11 19577055 19577215 -129206257 + MIR SINE MIR 31 191 -71 884 168 0 11 chr11 19577554 19577733 -129205739 + GA-rich Low_complexity Low_complexity 3 179 0 507 33 0 0 chr11 19577733 19577794 -129205678 + (GGGA)n Simple_repeat Simple_repeat 1 61 0 385 296 68 12 chr11 19577963 19578125 -129205347 - MIR SINE MIR -79 183 13 2150 101 14 0 chr11 19579041 19579342 -129204130 - AluSc SINE Alu 0 305 1 198 0 0 0 chr11 19579615 19579637 -129203835 + (CA)n Simple_repeat Simple_repeat 1 22 0 183 286 89 0 chr11 19580003 19580059 -129203413 + MIR3 SINE MIR 139 199 -9 267 314 18 136 chr11 19580098 19580487 -129202985 + L2 LINE L2 2912 3254 -18 213 39 0 0 chr11 19580492 19580518 -129202954 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 1640 176 7 23 chr11 19580627 19580933 -129202539 - AluJo SINE Alu -11 301 1 1256 128 0 0 chr11 19581488 19581667 -129201805 - AluSg/x SINE Alu -7 303 125 1116 62 0 0 chr11 19581670 19581799 -129201673 + AluSq/x SINE Alu 1 129 -184 22 0 0 0 chr11 19581805 19581827 -129201645 + AT_rich Low_complexity Low_complexity 1 22 0 458 220 40 0 chr11 19582306 19582406 -129201066 + MER5A DNA MER1_type 9 112 -77 188 194 296 31 chr11 19582331 19582429 -129201043 - MER5A DNA MER1_type -23 166 43 * 252 261 75 53 chr11 19582550 19582710 -129200762 - MIR SINE MIR -58 204 49 549 129 12 0 chr11 19583074 19583159 -129200313 + MER5A DNA MER1_type 1 86 -103 450 307 40 3 chr11 19584081 19584243 -129199229 + MIR SINE MIR 19 183 -62 1156 148 16 40 chr11 19584733 19584983 -129198489 - Charlie5 DNA MER1_type 0 2620 2377 282 294 24 12 chr11 19585115 19585200 -129198272 + MIR SINE MIR 20 105 -103 207 0 0 0 chr11 19585214 19585237 -129198235 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 310 308 106 0 chr11 19585239 19585343 -129198129 - L2 LINE L2 -8 3264 3150 354 23 0 0 chr11 19586673 19586716 -129196756 + (CA)n Simple_repeat Simple_repeat 1 43 0 232 259 134 27 chr11 19588212 19588324 -129195148 + MIR3 SINE MIR 8 131 -77 849 187 6 22 chr11 19588743 19588925 -129194547 - MIR SINE MIR -5 257 79 2511 87 55 3 chr11 19591205 19591551 -129191921 - THE1B LTR MaLR 0 364 1 457 240 25 8 chr11 19591851 19591972 -129191500 - FLAM_C SINE Alu -20 123 1 227 245 0 0 chr11 19592141 19592194 -129191278 + MIR3 SINE MIR 151 203 -5 224 271 173 38 chr11 19592652 19592785 -129190687 - MIR3 SINE MIR -32 176 26 935 289 70 13 chr11 19593102 19593649 -129189823 - MLT2E LTR ERVL 0 628 1 1511 87 0 0 chr11 19594059 19594254 -129189218 - MER107 DNA MER1_type -2 195 1 314 288 12 12 chr11 19594610 19594773 -129188699 + (TA)n Simple_repeat Simple_repeat 1 163 0 2203 195 81 53 chr11 19596549 19597119 -129186353 - MLT1E LTR MaLR 0 593 8 203 196 0 20 chr11 19597835 19597886 -129185586 + MIR SINE MIR 76 125 -137 22 35 0 0 chr11 19598572 19598601 -129184871 + AT_rich Low_complexity Low_complexity 1 29 0 234 191 0 0 chr11 19598938 19598985 -129184487 + (TATG)n Simple_repeat Simple_repeat 1 47 0 487 269 35 0 chr11 19600783 19600928 -129182544 + MER103 DNA DNA 8 157 -9 1074 209 23 9 chr11 19601003 19601223 -129182249 + MER58A DNA MER1_type 2 224 0 1840 174 10 0 chr11 19602276 19602570 -129180902 + AluJb SINE Alu 1 297 -15 384 274 38 84 chr11 19605399 19605465 -129178007 - MIR SINE MIR -15 247 179 593 276 17 0 chr11 19605465 19605639 -129177833 + MER104 DNA MER2_type 4 180 0 384 274 38 84 chr11 19605639 19605809 -129177663 - MIR SINE MIR -83 179 22 381 286 71 26 chr11 19605853 19606007 -129177465 - MIR SINE MIR -82 180 20 364 272 39 73 chr11 19606376 19606582 -129176890 + L1MB5 LINE L1 5727 5925 -249 * 1762 70 4 4 chr11 19606410 19606639 -129176833 + L1PA10 LINE L1 5754 5982 -186 21 57 0 0 chr11 19606999 19607034 -129176438 + AT_rich Low_complexity Low_complexity 1 35 0 698 97 0 19 chr11 19608102 19608205 -129175267 - AluSq/x SINE Alu -173 139 39 353 67 0 0 chr11 19608249 19608294 -129175178 + (TG)n Simple_repeat Simple_repeat 2 46 0 2101 150 62 0 chr11 19608362 19608701 -129174771 - MLT1B LTR MaLR -24 366 7 436 295 134 49 chr11 19608707 19609459 -129174013 - HAL1 LINE L1 -872 1635 820 987 218 15 0 chr11 19609990 19610196 -129173276 - MER3 DNA MER1_type 0 209 1 277 282 0 0 chr11 19610546 19610617 -129172855 - MIR SINE MIR -67 195 125 336 276 155 0 chr11 19611631 19611747 -129171725 - MIR SINE MIR -108 154 21 517 348 53 42 chr11 19612205 19612808 -129170664 + L2 LINE L2 2603 3221 -51 383 292 67 34 chr11 19613071 19613221 -129170251 + MIR3 SINE MIR 25 183 -25 2456 38 31 3 chr11 19613221 19613513 -129169959 - AluY SINE Alu -11 300 1 383 292 67 34 chr11 19613513 19613540 -129169932 + MIR3 SINE MIR 183 208 0 2294 100 3 0 chr11 19614152 19614462 -129169010 + AluSp SINE Alu 1 311 -2 6601 150 8 12 chr11 19614463 19615628 -129167844 - L1MC1 LINE L1 -7 6326 5171 234 306 74 93 chr11 19616691 19616907 -129166565 + L3 LINE CR1 1169 1380 -197 1659 246 18 15 chr11 19617219 19617613 -129165859 - L1ME1 LINE L1 -53 6113 5719 856 194 95 47 chr11 19617596 19617647 -129165825 + L1MCa LINE L1 20 67 -6359 * 2111 105 13 13 chr11 19617647 19617951 -129165521 + AluY SINE Alu 1 304 -7 856 194 95 47 chr11 19617951 19618131 -129165341 + L1MCa LINE L1 67 262 -6164 3185 168 20 2 chr11 19618132 19618734 -129164738 + L1MCa LINE L1 783 1395 -5031 1716 204 48 70 chr11 19618742 19619097 -129164375 - L1ME1 LINE L1 -423 5743 5401 2176 111 10 0 chr11 19619097 19619394 -129164078 - AluSc SINE Alu -9 300 1 1716 204 48 70 chr11 19619394 19619539 -129163933 - L1ME1 LINE L1 -765 5401 5254 228 244 24 37 chr11 19619581 19619663 -129163809 - L1MDb LINE L1 -5515 894 814 1721 189 3 10 chr11 19619934 19620225 -129163247 - AluJb SINE Alu -23 289 1 195 250 192 29 chr11 19620226 19620330 -129163142 + MER5A DNA MER1_type 47 167 -22 282 29 0 0 chr11 19620784 19620819 -129162653 + (CAT)n Simple_repeat Simple_repeat 1 35 0 201 74 0 0 chr11 19621558 19621585 -129161887 + (GGA)n Simple_repeat Simple_repeat 1 27 0 410 221 117 3 chr11 19622020 19622149 -129161323 + MIR SINE MIR 22 154 -60 469 268 32 0 chr11 19622351 19622474 -129160998 - MIR SINE MIR -128 134 8 300 297 7 14 chr11 19624557 19624702 -129158770 + (CA)n Simple_repeat Simple_repeat 1 144 0 517 284 83 32 chr11 19625991 19626269 -129157203 - L3 LINE CR1 -20 1557 1266 410 279 142 6 chr11 19627318 19627501 -129155971 + MIR SINE MIR 3 210 -52 348 114 0 77 chr11 19627565 19627659 -129155813 + MLT2C1 LTR ERVL 1 77 -337 270 0 0 0 chr11 19629108 19629138 -129154334 + (A)n Simple_repeat Simple_repeat 1 30 0 267 31 0 0 chr11 19629283 19629315 -129154157 + (TG)n Simple_repeat Simple_repeat 1 32 0 22 56 0 0 chr11 19629355 19629391 -129154081 + AT_rich Low_complexity Low_complexity 1 36 0 404 351 81 0 chr11 19630745 19630956 -129152516 + MIR SINE MIR 25 252 -10 307 328 44 10 chr11 19631194 19631398 -129152074 - L1ME4a LINE L1 -188 5933 5723 369 281 79 0 chr11 19631435 19631549 -129151923 - L2 LINE L2 0 3313 3191 1055 201 40 0 chr11 19631551 19631750 -129151722 + MER3 DNA MER1_type 1 207 -2 291 260 7 93 chr11 19631897 19632047 -129151425 - L1ME3 LINE L1 -2 6160 6024 208 191 0 0 chr11 19632066 19632108 -129151364 - L2 LINE L2 -261 3052 3011 272 326 41 0 chr11 19632933 19633031 -129150441 + L2 LINE L2 2567 2668 -646 204 40 0 0 chr11 19633659 19633684 -129149788 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 198 348 35 43 chr11 19633689 19633804 -129149668 - L2 LINE L2 -20 3252 3139 299 206 118 0 chr11 19634005 19634073 -129149399 + MLT1A2 LTR MaLR 1 76 -298 192 292 123 19 chr11 19634684 19634838 -129148634 + MIR SINE MIR 93 262 0 314 264 0 22 chr11 19636283 19636374 -129147098 + L2 LINE L2 3225 3313 0 2127 183 38 25 chr11 19637380 19637823 -129145649 + MER31B LTR ERV1 1 449 -17 206 234 43 0 chr11 19638133 19638180 -129145292 - L2 LINE L2 -90 3182 3134 312 284 104 30 chr11 19638365 19638499 -129144973 + MIR SINE MIR 88 231 -31 436 114 57 0 chr11 19639305 19639375 -129144097 + MLT2D LTR ERVL 155 228 -186 349 138 35 0 chr11 19639371 19639429 -129144043 + MLT2B1 LTR ERVL 461 520 0 * 365 176 0 12 chr11 19639765 19639850 -129143622 + CT-rich Low_complexity Low_complexity 1 84 0 972 313 98 23 chr11 19641026 19641797 -129141675 - L2 LINE L2 0 3313 2472 226 163 41 0 chr11 19642231 19642280 -129141192 - L2 LINE L2 0 3313 3263 483 201 115 63 chr11 19642849 19643023 -129140449 - MIR SINE MIR -13 249 67 213 281 73 21 chr11 19643167 19643263 -129140209 - L2 LINE L2 -38 3234 3134 208 210 0 65 chr11 19643495 19643557 -129139915 + MIR SINE MIR 86 143 -65 732 299 147 20 chr11 19644124 19644756 -129138716 - L2 LINE L2 -8 3305 2540 993 244 18 0 chr11 19645085 19645310 -129138162 - MIR SINE MIR -23 239 11 263 305 21 11 chr11 19645443 19645538 -129137934 + MIR SINE MIR 39 134 -128 393 136 0 0 chr11 19646131 19646197 -129137275 + (CA)n Simple_repeat Simple_repeat 1 66 0 189 0 0 0 chr11 19646365 19646386 -129137086 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 411 205 51 60 chr11 19646785 19646902 -129136570 - L2 LINE L2 -8 3305 3190 355 302 67 16 chr11 19647006 19647261 -129136211 + L1ME4a LINE L1 5681 5948 -173 286 240 120 30 chr11 19647286 19647386 -129136086 - L2 LINE L2 -5 3308 3200 27 49 0 0 chr11 19647484 19647525 -129135947 + AT_rich Low_complexity Low_complexity 1 41 0 488 237 155 104 chr11 19648381 19648735 -129134737 + LTR33A LTR ERVL 149 520 -3 2415 90 0 0 chr11 19649066 19649357 -129134115 + AluY SINE Alu 3 296 -15 189 0 0 0 chr11 19649357 19649378 -129134094 + (TA)n Simple_repeat Simple_repeat 2 22 0 1752 178 17 3 chr11 19650081 19650197 -129133275 + AluJo SINE Alu 2 115 -197 468 0 0 0 chr11 19650197 19650249 -129133223 + (CA)n Simple_repeat Simple_repeat 1 52 0 1752 178 17 3 chr11 19650249 19650424 -129133048 + AluJo SINE Alu 115 297 -15 567 271 102 25 chr11 19650447 19650683 -129132789 + MIR SINE MIR 1 254 -8 730 247 36 18 chr11 19652506 19652729 -129130743 + L2 LINE L2 2854 3080 -233 200 270 16 16 chr11 19653211 19653274 -129130198 + L2 LINE L2 3158 3220 -52 548 321 23 14 chr11 19653723 19653934 -129129538 - MIR SINE MIR -48 214 11 211 238 32 0 chr11 19654114 19654177 -129129295 + L2 LINE L2 2977 3041 -231 705 210 61 17 chr11 19654243 19654424 -129129048 + MER5A DNA MER1_type 1 189 0 313 353 83 6 chr11 19654728 19654884 -129128588 - L2 LINE L2 -1 3271 3104 591 265 66 20 chr11 19654884 19655080 -129128392 - MIR SINE MIR -56 206 2 280 258 15 0 chr11 19655191 19655257 -129128215 - L2 LINE L2 -217 3055 2989 312 247 14 0 chr11 19655567 19655640 -129127832 - L2 LINE L2 0 3313 3240 7475 177 16 4 chr11 19656162 19658362 -129125110 - L1PA13 LINE L1 0 6163 3924 480 274 153 14 chr11 19658396 19658679 -129124793 + L2 LINE L2 2748 3062 -251 284 152 167 0 chr11 19658825 19658891 -129124581 + MLT1J1 LTR MaLR 245 321 -125 379 296 45 28 chr11 19658987 19659274 -129124198 - L1M4 LINE L1 -816 5330 5039 935 312 32 12 chr11 19659450 19659956 -129123516 - L1M4 LINE L1 -1918 4228 3713 982 66 0 0 chr11 19660634 19660755 -129122717 + L1MA1 LINE L1 6175 6295 -7 458 324 81 34 chr11 19661702 19662353 -129121119 - HAL1 LINE L1 -743 1764 1083 2512 124 30 44 chr11 19663028 19663462 -129120010 - MSTA LTR MaLR 0 428 1 234 250 95 12 chr11 19663586 19663670 -129119802 + L2 LINE L2 3144 3234 -38 498 266 112 19 chr11 19664749 19664963 -129118509 - MIR SINE MIR -12 250 17 25 31 0 0 chr11 19666152 19666184 -129117288 + AT_rich Low_complexity Low_complexity 1 32 0 498 90 0 0 chr11 19666274 19666341 -129117131 + LTR29 LTR ERV1 490 556 -66 361 188 29 0 chr11 19666690 19666759 -129116713 + MIR SINE MIR 82 152 -56 375 199 321 8 chr11 19667648 19667779 -129115693 - MER5B DNA MER1_type -4 174 3 304 309 105 19 chr11 19667885 19668047 -129115425 - L2 LINE L2 -187 3085 2910 2338 4 0 0 chr11 19668166 19668413 -129115059 + AluYa5 SINE Alu 43 289 -22 344 232 11 0 chr11 19668971 19669066 -129114406 + L1ME4a LINE L1 5786 5881 -240 396 296 81 17 chr11 19669113 19669285 -129114187 - L2 LINE L2 -37 3276 3094 834 134 67 34 chr11 19669328 19669477 -129113995 - FRAM SINE Alu -12 154 1 342 288 123 5 chr11 19670260 19670459 -129113013 + MIR SINE MIR 1 229 -33 554 227 0 74 chr11 19671059 19671222 -129112250 - MER117 DNA MER1_type -27 170 20 1335 191 148 13 chr11 19671355 19671658 -129111814 + MER2 DNA MER2_type 1 344 0 635 215 0 51 chr11 19672773 19672931 -129110541 + MIR SINE MIR 73 222 -40 507 225 0 0 chr11 19674283 19674372 -129109100 - MER81 DNA DNA -25 89 1 322 333 80 9 chr11 19675441 19675654 -129107818 + L3 LINE CR1 1347 1574 -3 1630 206 46 3 chr11 19675696 19676022 -129107450 + MER58B DNA MER1_type 2 341 0 2484 67 0 0 chr11 19676256 19676555 -129106917 + AluY SINE Alu 1 299 -12 786 229 20 35 chr11 19676874 19677075 -129106397 + MLT1D LTR MaLR 44 241 -264 436 212 0 0 chr11 19677085 19677170 -129106302 + MLT1D LTR MaLR 404 488 -17 864 250 82 55 chr11 19677562 19677588 -129105884 - L1ME2 LINE L1 -1 6163 6139 2826 127 12 23 chr11 19677588 19678015 -129105457 + MSTB LTR MaLR 5 426 0 864 250 82 55 chr11 19678015 19678485 -129104987 - L1ME2 LINE L1 -25 6139 5565 15565 119 30 9 chr11 19678485 19680852 -129102620 + Tigger1 DNA MER2_type 3 2418 0 864 250 82 55 chr11 19680852 19680965 -129102507 - L1ME2 LINE L1 -599 5565 5456 1631 218 70 14 chr11 19681671 19682084 -129101388 + MER63B DNA MER1_type 1 436 0 553 253 116 27 chr11 19682558 19682783 -129100689 - MIR SINE MIR -11 251 7 550 192 34 20 chr11 19683123 19683269 -129100203 + L1MA10 LINE L1 6180 6327 -7 936 167 83 86 chr11 19683271 19683566 -129099906 + L1ME1 LINE L1 5881 6184 0 340 248 26 26 chr11 19683828 19683941 -129099531 - MIR SINE MIR -130 132 20 2131 207 37 25 chr11 19684106 19684617 -129098855 + L1MD3 LINE L1 7479 7995 0 300 70 0 0 chr11 19685021 19685064 -129098408 + (TG)n Simple_repeat Simple_repeat 1 43 0 330 123 0 0 chr11 19685064 19685121 -129098351 + (GA)n Simple_repeat Simple_repeat 2 58 0 236 163 41 0 chr11 19685122 19685171 -129098301 + (CAGA)n Simple_repeat Simple_repeat 4 54 0 1139 230 325 9 chr11 19685827 19686409 -129097063 - LTR50 LTR ERVL -14 781 16 393 306 92 5 chr11 19686552 19686748 -129096724 - MIR SINE MIR 0 262 50 4844 136 14 37 chr11 19686941 19686966 -129096506 + L1PA15 LINE L1 4618 4642 -1523 1630 179 3 50 chr11 19686966 19687285 -129096187 + AluJo SINE Alu 1 304 -8 4844 136 14 37 chr11 19687285 19687555 -129095917 + L1PA15 LINE L1 4642 4917 -1248 1950 124 88 28 chr11 19687555 19687909 -129095563 + THE1C LTR MaLR 1 375 0 4844 136 14 37 chr11 19687909 19689130 -129094342 + L1PA15 LINE L1 4917 6162 -3 215 317 8 25 chr11 19689285 19689405 -129094067 - MIR SINE MIR 0 262 145 598 263 7 7 chr11 19689480 19689632 -129093840 - MIR SINE MIR -109 153 2 341 237 47 91 chr11 19689648 19689901 -129093571 + L1ME4a LINE L1 5852 6093 -28 25 0 0 0 chr11 19690413 19690438 -129093034 + AT_rich Low_complexity Low_complexity 1 25 0 1198 190 24 9 chr11 19690799 19691010 -129092462 - MER58A DNA MER1_type -10 214 1 510 301 95 35 chr11 19691103 19691502 -129091970 - L2 LINE L2 -6 3307 2885 1000 217 45 20 chr11 19691525 19691769 -129091703 + AluJo SINE Alu 55 304 -8 597 297 34 22 chr11 19692513 19692764 -129090708 + MIR SINE MIR 2 262 0 1926 149 21 0 chr11 19692850 19693138 -129090334 + AluJb SINE Alu 1 294 -18 295 276 92 11 chr11 19693183 19693357 -129090115 + L1ME LINE L1 5611 5798 -323 211 189 0 0 chr11 19693511 19693548 -129089924 + (CA)n Simple_repeat Simple_repeat 2 38 0 222 37 0 0 chr11 19693549 19693576 -129089896 + (GA)n Simple_repeat Simple_repeat 2 28 0 1283 89 0 11 chr11 19693618 19693797 -129089675 - L1PA11 LINE L1 -3 6171 5995 2678 24 0 7 chr11 19694532 19694830 -129088642 - AluY SINE Alu -15 296 1 1413 245 139 44 chr11 19694940 19695513 -129087959 + MLT1G LTR MaLR 1 590 0 419 284 84 21 chr11 19695525 19695715 -129087757 + MIR SINE MIR 28 229 -33 297 220 136 52 chr11 19696356 19696547 -129086925 - MIR SINE MIR 0 262 56 2455 98 0 0 chr11 19696562 19696869 -129086603 - AluSx SINE Alu -5 307 1 189 0 0 0 chr11 19697530 19697551 -129085921 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 419 321 104 8 chr11 19698536 19698776 -129084696 + L3 LINE CR1 1303 1565 -12 1613 225 71 46 chr11 19698912 19698940 -129084532 - MLT1F1 LTR MaLR -2 565 539 1612 189 51 43 chr11 19698940 19699100 -129084372 + MLT1A2 LTR MaLR 1 158 -216 2110 126 0 13 chr11 19699100 19699410 -129084062 + AluSx SINE Alu 1 306 -6 1612 189 51 43 chr11 19699410 19699620 -129083852 + MLT1A2 LTR MaLR 158 374 0 1613 225 71 46 chr11 19699620 19700071 -129083401 - MLT1F1 LTR MaLR -28 539 74 262 277 139 0 chr11 19700160 19700261 -129083211 + L2 LINE L2 3198 3312 -1 1108 86 43 21 chr11 19700336 19700522 -129082950 - L1MA7 LINE L1 0 6291 6102 279 0 0 0 chr11 19700962 19700993 -129082479 + (CTG)n Simple_repeat Simple_repeat 3 33 0 243 88 0 0 chr11 19701253 19701287 -129082185 + (A)n Simple_repeat Simple_repeat 1 34 0 256 247 26 26 chr11 19701726 19701803 -129081669 + GA-rich Low_complexity Low_complexity 4 80 0 250 269 15 0 chr11 19702301 19702368 -129081104 - L2 LINE L2 -8 3305 3238 2495 132 45 26 chr11 19702452 19702876 -129080596 + MSTB1 LTR MaLR 1 432 0 2247 131 33 25 chr11 19703144 19703503 -129079969 - THE1B LTR MaLR -2 362 1 186 43 0 0 chr11 19703548 19703571 -129079901 + (CCCCAG)n Simple_repeat Simple_repeat 2 24 0 790 231 232 16 chr11 19703965 19704378 -129079094 - L2 LINE L2 -28 3285 2776 620 214 184 5 chr11 19705901 19706102 -129077370 - MIR SINE MIR -24 238 2 318 195 142 0 chr11 19706107 19706220 -129077252 + MER113 DNA MER1_type? 82 210 -311 2241 107 7 0 chr11 19707697 19707995 -129075477 - AluSx SINE Alu -9 303 4 18287 91 6 1 chr11 19708221 19711538 -129071934 - L1PA8 LINE L1 0 6172 2839 513 227 147 1 chr11 19712392 19712571 -129070901 + L1ME1 LINE L1 5974 6164 0 236 250 0 89 chr11 19712821 19712933 -129070539 + MIR SINE MIR 90 191 -71 321 331 63 7 chr11 19713634 19713776 -129069696 - L2 LINE L2 0 3272 3123 186 43 0 0 chr11 19713984 19714007 -129069465 + (CA)n Simple_repeat Simple_repeat 1 23 0 2121 125 98 47 chr11 19714076 19714483 -129068989 + MSTA LTR MaLR 1 428 0 2016 93 3 60 chr11 19715195 19715496 -129067976 + AluSg SINE Alu 13 296 -14 328 316 68 0 chr11 19715714 19715847 -129067625 + MIR SINE MIR 64 205 -57 283 258 125 33 chr11 19715883 19716003 -129067469 - MIR3 SINE MIR -76 132 2 814 232 31 35 chr11 19716112 19716366 -129067106 - MIR SINE MIR 0 262 10 2029 139 10 3 chr11 19716708 19717003 -129066469 + AluJb SINE Alu 1 297 -15 3124 208 36 11 chr11 19717158 19717794 -129065678 + MER82 DNA MER2_type 2 653 0 756 229 212 31 chr11 19718159 19718578 -129064894 + L2 LINE L2 2819 3313 0 366 337 62 16 chr11 19718622 19718815 -129064657 - MIR SINE MIR -32 230 29 241 176 0 68 chr11 19718825 19718899 -129064573 - MER5C DNA MER1_type -6 318 250 228 224 75 0 chr11 19718960 19719027 -129064445 - MER5C DNA MER1_type -210 114 43 196 265 106 69 chr11 19719309 19719498 -129063974 + L2 LINE L2 3027 3222 -91 209 323 21 0 chr11 19719558 19719651 -129063821 - MIR SINE MIR -125 137 43 771 176 72 0 chr11 19719919 19720072 -129063400 - MER53 DNA DNA -4 185 22 196 167 0 153 chr11 19720111 19720183 -129063289 - MIR SINE MIR -120 142 82 1099 219 26 87 chr11 19720466 19720845 -129062627 + L1ME3 LINE L1 5776 6131 -31 3399 25 8 0 chr11 19721069 19721464 -129062008 + L1PA5 LINE L1 5757 6154 0 776 255 5 25 chr11 19721534 19721738 -129061734 + MIR SINE MIR 60 259 -3 298 291 18 91 chr11 19721829 19721880 -129061592 + MIR3 SINE MIR 35 88 -120 2545 138 13 0 chr11 19721880 19722265 -129061207 - MLT1B LTR MaLR 0 390 1 298 291 18 91 chr11 19722265 19722378 -129061094 + MIR3 SINE MIR 88 187 -21 376 260 14 68 chr11 19722458 19722604 -129060868 - L2 LINE L2 -1 3271 3134 225 333 128 0 chr11 19723242 19723359 -129060113 - L2 LINE L2 -16 3256 3125 265 302 71 0 chr11 19723518 19723644 -129059828 - MIR3 SINE MIR -62 146 12 210 143 0 0 chr11 19723922 19723957 -129059515 + (TG)n Simple_repeat Simple_repeat 1 35 0 338 313 18 102 chr11 19724254 19724529 -129058943 + L2 LINE L2 3020 3271 -1 239 200 36 18 chr11 19724554 19724609 -129058863 + L2 LINE L2 3201 3256 -16 367 216 108 61 chr11 19725023 19725171 -129058301 + MIR SINE MIR 107 261 -1 281 250 40 0 chr11 19726008 19726084 -129057388 + L2 LINE L2 3229 3307 -6 358 287 29 15 chr11 19726629 19726765 -129056707 + MIR SINE MIR 16 153 -55 1972 131 25 0 chr11 19727511 19727793 -129055679 - AluJo SINE Alu -16 296 8 388 321 103 22 chr11 19727907 19728085 -129055387 - L3 LINE CR1 -13 1564 1402 2582 40 7 7 chr11 19728085 19728388 -129055084 - AluY SINE Alu -8 303 1 388 321 103 22 chr11 19728388 19728576 -129054896 - L3 LINE CR1 -175 1402 1168 206 256 323 15 chr11 19728606 19728739 -129054733 + MIR SINE MIR 35 208 -54 288 256 16 83 chr11 19729277 19729398 -129054074 + MLT1K LTR MaLR 136 248 -340 193 125 0 25 chr11 19729496 19729536 -129053936 - L2 LINE L2 -8 3305 3267 660 265 62 9 chr11 19729541 19729752 -129053720 - LTR33A LTR ERVL -9 514 293 266 283 26 44 chr11 19730159 19730272 -129053200 - L2 LINE L2 -37 3276 3166 903 270 52 11 chr11 19730314 19730419 -129053053 - LTR16A1 LTR ERVL 0 457 358 1740 192 157 17 chr11 19730419 19730826 -129052646 + MLT2C2 LTR ERVL 1 464 0 903 270 52 11 chr11 19730826 19730987 -129052485 - LTR16A1 LTR ERVL -99 358 180 277 281 35 61 chr11 19731491 19731556 -129051916 + MER81 DNA DNA 4 66 -48 1722 149 51 60 chr11 19731556 19731871 -129051601 - AluSx SINE Alu 0 312 1 277 281 35 61 chr11 19731871 19731919 -129051553 + MER81 DNA DNA 66 114 0 2227 119 0 3 chr11 19733679 19733981 -129049491 - AluSx SINE Alu -10 302 2 2424 134 13 10 chr11 19735498 19735887 -129047585 - MLT1B LTR MaLR 0 390 1 323 300 108 96 chr11 19735966 19736363 -129047109 + L2 LINE L2 2870 3271 -1 652 229 150 18 chr11 19736478 19736829 -129046643 + MLT1J2 LTR MaLR 22 450 0 1840 110 0 4 chr11 19737248 19737494 -129045978 - AluSx SINE Alu -13 299 55 226 0 0 0 chr11 19737648 19737673 -129045799 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2095 106 11 0 chr11 19737673 19737955 -129045517 - AluSp SINE Alu -28 285 1 308 288 291 26 chr11 19738147 19738525 -129044947 + L2 LINE L2 2149 2626 -688 773 285 208 6 chr11 19738538 19739089 -129044383 - LTR50 LTR ERVL 0 795 30 777 269 28 43 chr11 19739146 19739399 -129044073 - MIR SINE MIR -2 260 12 200 324 213 0 chr11 19739482 19739590 -129043882 - MER5A DNA MER1_type -1 188 58 207 250 12 88 chr11 19739796 19739876 -129043596 - L2 LINE L2 -4 3309 3236 245 258 30 0 chr11 19739882 19739948 -129043524 + MIR SINE MIR 70 137 -125 297 326 0 0 chr11 19740058 19740147 -129043325 - L2 LINE L2 -508 2806 2718 2681 45 0 6 chr11 19741442 19741753 -129041719 - AluY SINE Alu -2 309 1 1234 187 44 4 chr11 19742496 19742721 -129040751 + Tigger7 DNA MER2_type 2 235 -2252 622 182 0 0 chr11 19742732 19742831 -129040641 + Tigger7 DNA MER2_type 2389 2487 0 184 331 71 43 chr11 19742931 19743115 -129040357 + L2 LINE L2 2897 3085 -187 189 310 80 10 chr11 19744384 19744484 -129038988 + MIR SINE MIR 107 213 -49 2193 85 0 0 chr11 19744489 19744799 -129038673 + AluSg SINE Alu 1 310 0 304 255 38 28 chr11 19744816 19744922 -129038550 - MIR SINE MIR -141 121 15 209 234 0 21 chr11 19745362 19745409 -129038063 + CT-rich Low_complexity Low_complexity 3 48 0 192 77 0 0 chr11 19745410 19745436 -129038036 + (TTA)n Simple_repeat Simple_repeat 2 27 0 519 263 145 7 chr11 19745913 19746065 -129037407 + MIR3 SINE MIR 30 202 -6 311 344 32 16 chr11 19746112 19746237 -129037235 - MIR SINE MIR -62 146 20 198 0 0 0 chr11 19746462 19746484 -129036988 + (A)n Simple_repeat Simple_repeat 1 22 0 413 313 0 0 chr11 19747872 19747984 -129035488 - L3 LINE CR1 -128 1449 1338 1609 173 0 4 chr11 19748779 19749034 -129034438 + AluJb SINE Alu 35 288 -24 32 0 0 0 chr11 19749062 19749094 -129034378 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr11 19749689 19749710 -129033762 + AT_rich Low_complexity Low_complexity 1 21 0 308 302 122 34 chr11 19749801 19750006 -129033466 - L3b LINE CR1 -208 1375 1153 230 295 18 43 chr11 19751373 19751522 -129031950 + MIR SINE MIR 16 175 -87 327 329 140 12 chr11 19752050 19752214 -129031258 + MIR3 SINE MIR 3 187 -21 290 250 0 53 chr11 19754562 19754638 -129028834 - L3 LINE CR1 -208 1369 1298 780 275 183 39 chr11 19754728 19755165 -129028307 - L3 LINE CR1 -296 1281 782 23 54 0 0 chr11 19755388 19755425 -129028047 + AT_rich Low_complexity Low_complexity 1 37 0 382 327 114 15 chr11 19755428 19755630 -129027842 - MIR SINE MIR -11 251 30 255 210 16 97 chr11 19757188 19757312 -129026160 - MER112 DNA MER1_type -13 247 134 202 256 0 0 chr11 19757988 19758031 -129025441 + (TAA)n Simple_repeat Simple_repeat 2 44 0 181 273 18 0 chr11 19758080 19758135 -129025337 - MIR SINE MIR -97 165 110 480 293 246 20 chr11 19759699 19760265 -129023207 - L2 LINE L2 -258 3055 2364 282 226 400 32 chr11 19760269 19760424 -129023048 - MIR SINE MIR -15 247 36 2094 104 0 0 chr11 19761257 19761527 -129021945 - AluSq SINE Alu -9 304 35 460 306 180 13 chr11 19761787 19762176 -129021296 - L2 LINE L2 -910 2404 1951 514 239 103 19 chr11 19762591 19762746 -129020726 - L2 LINE L2 -4 3309 3142 1054 263 344 7 chr11 19762748 19763315 -129020157 - L2 LINE L2 -497 2817 2060 407 375 34 11 chr11 19766401 19766577 -129016895 - L3 LINE CR1 0 1577 1398 272 210 16 0 chr11 19767752 19767814 -129015658 + L3b LINE CR1 1347 1409 -174 2120 104 40 0 chr11 19767878 19768176 -129015296 - AluY SINE Alu -1 310 1 240 147 0 0 chr11 19769129 19769163 -129014309 - Charlie5 DNA MER1_type -2415 197 164 253 140 20 20 chr11 19769790 19769840 -129013632 - MARNA DNA Mariner -342 244 195 692 335 61 31 chr11 19771150 19771609 -129011863 - L2 LINE L2 -300 3013 2543 2170 97 24 0 chr11 19771739 19772027 -129011445 - AluSx SINE Alu -17 295 1 306 0 0 0 chr11 19772394 19772428 -129011044 + (CA)n Simple_repeat Simple_repeat 2 35 0 270 269 126 59 chr11 19773424 19773543 -129009929 - L2 LINE L2 0 3272 3146 814 125 0 0 chr11 19774016 19774128 -129009344 + AluSg/x SINE Alu 191 302 -10 1610 216 92 101 chr11 19774331 19774934 -129008538 + MLT1E LTR MaLR 1 624 0 42794 32 23 2 chr11 19775781 19781800 -129001672 - L1PA3 LINE L1 0 6155 3 1715 153 0 70 chr11 19781819 19781995 -129001477 - AluJo SINE Alu -20 292 146 4002 64 6 2 chr11 19781995 19782510 -129000962 - L1PA7 LINE L1 -4 6150 5634 1715 153 0 70 chr11 19782510 19782647 -129000825 - AluJo SINE Alu -166 146 1 370 258 203 8 chr11 19782700 19782828 -129000644 - MARNA DNA Mariner -38 548 396 207 0 0 0 chr11 19782917 19782940 -129000532 + (TA)n Simple_repeat Simple_repeat 2 24 0 233 254 0 0 chr11 19782984 19783043 -129000429 - L1ME3 LINE L1 -85 6077 6019 1436 262 46 65 chr11 19783157 19783906 -128999566 - L1ME3 LINE L1 -208 5962 5234 1776 288 95 53 chr11 19783924 19784948 -128998524 + L1MEc LINE L1 35 1132 -5264 2074 108 11 0 chr11 19784948 19785225 -128998247 + AluSx SINE Alu 22 301 -11 1776 288 95 53 chr11 19785225 19785573 -128997899 + L1MEc LINE L1 1132 1464 -4932 1880 81 0 4 chr11 19785577 19785847 -128997625 + AluY SINE Alu 35 303 0 1295 104 0 0 chr11 19785847 19786020 -128997452 + AluSg/x SINE Alu 130 302 -8 225 155 17 17 chr11 19786050 19786108 -128997364 + L1MCa LINE L1 1511 1568 -4858 2771 245 57 58 chr11 19786136 19786764 -128996708 + L1M4 LINE L1 2971 3598 -2548 2315 73 14 0 chr11 19786764 19787051 -128996421 - AluY SINE Alu -20 291 1 2771 245 57 58 chr11 19787051 19787713 -128995759 + L1M4 LINE L1 3598 4260 -1886 761 247 0 0 chr11 19787810 19787960 -128995512 - Tigger3(Golem) DNA MER2_type -2 3027 2878 228 298 53 0 chr11 19787961 19788018 -128995454 - Tigger3(Golem) DNA MER2_type -2969 60 1 424 212 113 52 chr11 19788049 19788261 -128995211 + MARNA DNA Mariner 221 445 -141 28 29 0 0 chr11 19788293 19788328 -128995144 + AT_rich Low_complexity Low_complexity 1 35 0 7135 169 23 23 chr11 19788338 19790212 -128993260 + L1PA14 LINE L1 4078 5956 -205 2083 132 3 43 chr11 19790212 19790537 -128992935 + AluSx SINE Alu 1 312 0 7135 169 23 23 chr11 19790537 19790743 -128992729 + L1PA14 LINE L1 5955 6160 -1 3230 198 88 19 chr11 19790829 19791793 -128991679 - L1ME1 LINE L1 -26 6140 5089 24 91 0 0 chr11 19792330 19792396 -128991076 + AT_rich Low_complexity Low_complexity 1 66 0 316 260 152 83 chr11 19792459 19793064 -128990408 - L1ME4a LINE L1 -100 6021 5374 180 0 0 0 chr11 19793064 19793084 -128990388 + (TTG)n Simple_repeat Simple_repeat 2 21 0 316 260 152 83 chr11 19793084 19793150 -128990322 - L1ME4a LINE L1 -747 5374 5314 1375 191 3 67 chr11 19793198 19793513 -128989959 - AluJo SINE Alu -13 299 5 22 80 0 0 chr11 19794061 19794111 -128989361 + AT_rich Low_complexity Low_complexity 1 50 0 890 260 239 24 chr11 19794177 19794432 -128989040 + Charlie7 DNA MER1_type 125 324 -2288 189 0 0 0 chr11 19794432 19794453 -128989019 + (TAA)n Simple_repeat Simple_repeat 1 21 0 890 260 239 24 chr11 19794453 19794658 -128988814 + Charlie7 DNA MER1_type 324 684 -1928 182 396 36 7 chr11 19794954 19795093 -128988379 + MIR3 SINE MIR 60 202 -6 491 269 39 8 chr11 19795366 19795496 -128987976 - L2 LINE L2 0 3313 3180 202 290 136 32 chr11 19795619 19795774 -128987698 + MIR3 SINE MIR 10 180 -28 190 211 0 39 chr11 19795937 19795989 -128987483 + MIR3 SINE MIR 154 203 -5 1306 235 195 10 chr11 19796229 19796727 -128986745 + MLT1G LTR MaLR 1 590 0 204 205 0 0 chr11 19796910 19796949 -128986523 + GA-rich Low_complexity Low_complexity 2 40 0 1088 248 49 54 chr11 19797023 19797457 -128986015 - L2 LINE L2 -1 3312 2843 2186 86 17 3 chr11 19797457 19797747 -128985725 + AluSc SINE Alu 1 294 -15 1088 248 49 54 chr11 19797747 19797787 -128985685 - L2 LINE L2 -470 2843 2804 409 215 75 28 chr11 19797836 19797943 -128985529 + L2 LINE L2 3200 3311 -2 421 282 15 8 chr11 19797947 19798078 -128985394 + MIR SINE MIR 57 188 -74 340 327 9 0 chr11 19798804 19798911 -128984561 - L2 LINE L2 -3 3310 3203 694 286 30 0 chr11 19800003 19800202 -128983270 + MIR SINE MIR 55 259 -3 215 160 20 20 chr11 19800222 19800272 -128983200 + MIR SINE MIR 83 132 -76 28 48 0 0 chr11 19800640 19800682 -128982790 + AT_rich Low_complexity Low_complexity 1 42 0 703 132 8 8 chr11 19801390 19801519 -128981953 + (TAGA)n Simple_repeat Simple_repeat 4 132 0 1549 140 121 34 chr11 19801866 19802130 -128981342 + AluJo SINE Alu 1 287 -25 265 250 155 0 chr11 19802419 19802503 -128980969 + MIR SINE MIR 17 113 -95 2409 93 3 0 chr11 19802621 19802922 -128980550 + AluSp SINE Alu 1 302 -11 819 196 0 0 chr11 19802977 19803115 -128980357 + FAM SINE Alu 26 163 -22 382 288 66 60 chr11 19803159 19803461 -128980011 - L3 LINE CR1 -558 1019 716 236 326 11 11 chr11 19803503 19803592 -128979880 - L2 LINE L2 0 3272 3184 277 203 0 17 chr11 19803701 19803760 -128979712 + MLT1J2 LTR MaLR 27 84 -366 578 268 109 14 chr11 19805601 19805821 -128977651 + MIR SINE MIR 22 262 0 2332 132 8 35 chr11 19806236 19806607 -128976865 + THE1B LTR MaLR 1 361 -3 355 238 149 18 chr11 19807075 19807243 -128976229 + MIR SINE MIR 23 212 -50 188 182 0 23 chr11 19807523 19807567 -128975905 - L2 LINE L2 -1317 1997 1955 324 291 94 0 chr11 19808209 19808326 -128975146 - MIR3 SINE MIR -4 204 77 431 257 9 9 chr11 19808496 19808609 -128974863 - MIR SINE MIR -63 145 33 198 0 0 0 chr11 19808862 19808884 -128974588 + (A)n Simple_repeat Simple_repeat 1 22 0 657 246 55 35 chr11 19809164 19809420 -128974052 - MIR SINE MIR -1 261 1 976 191 0 0 chr11 19809496 19809664 -128973808 + FRAM SINE Alu 1 168 -8 21 36 0 0 chr11 19809761 19809789 -128973683 + AT_rich Low_complexity Low_complexity 1 28 0 11571 184 23 10 chr11 19809807 19813252 -128970220 - L1PA16 LINE L1 -3 6163 2680 2440 87 0 0 chr11 19813369 19813667 -128969805 - AluY SINE Alu -13 298 1 27 0 0 0 chr11 19814428 19814455 -128969017 + AT_rich Low_complexity Low_complexity 1 27 0 432 263 15 23 chr11 19814541 19814674 -128968798 + L2 LINE L2 3182 3313 0 187 323 15 0 chr11 19814755 19814820 -128968652 - L2 LINE L2 -21 3251 3186 283 270 43 17 chr11 19814863 19814978 -128968494 - L2 LINE L2 -1 3271 3154 229 255 47 57 chr11 19815050 19815156 -128968316 + L3 LINE CR1 1416 1520 -57 2178 116 7 0 chr11 19815157 19815458 -128968014 - AluSx SINE Alu -9 303 1 2416 102 0 0 chr11 19815721 19816025 -128967447 + AluSg SINE Alu 1 304 -6 334 226 151 19 chr11 19817387 19817493 -128965979 + MIR SINE MIR 26 145 -63 183 80 0 0 chr11 19819272 19819297 -128964175 + (A)n Simple_repeat Simple_repeat 1 25 0 25 83 0 0 chr11 19819399 19819459 -128964013 + GC_rich Low_complexity Low_complexity 1 60 0 195 42 0 0 chr11 19819766 19819790 -128963682 + (CGG)n Simple_repeat Simple_repeat 2 25 0 27 29 0 0 chr11 19820306 19820340 -128963132 + AT_rich Low_complexity Low_complexity 1 34 0 351 245 0 32 chr11 19821849 19821892 -128961580 + MIR SINE MIR 60 103 -105 583 113 0 0 chr11 19821892 19821972 -128961500 + MADE1 DNA Mariner 1 80 0 351 245 0 32 chr11 19821972 19822022 -128961450 + MIR SINE MIR 103 150 -58 532 138 23 0 chr11 19822287 19822374 -128961098 + L1MD3 LINE L1 7893 7981 -14 984 275 50 45 chr11 19824243 19824665 -128958807 - L2 LINE L2 -8 3305 2882 250 252 55 110 chr11 19825047 19825112 -128958360 + MIR SINE MIR 66 122 -140 2553 52 0 3 chr11 19825112 19825421 -128958051 - AluY SINE Alu -3 308 1 250 252 55 110 chr11 19825421 19825482 -128957990 + MIR SINE MIR 122 185 -77 2053 91 0 0 chr11 19826621 19826884 -128956588 - AluSc SINE Alu -9 300 38 384 250 114 57 chr11 19877006 19877182 -128906290 + L2 LINE L2 2868 3053 -219 226 343 25 16 chr11 19877347 19877503 -128905969 + MIR SINE MIR 35 192 -62 225 261 130 0 chr11 19877542 19877611 -128905861 - MIR SINE MIR 0 262 185 478 209 32 110 chr11 19877611 19877956 -128905516 - L1MD2 LINE L1 -12 6347 5971 8439 128 25 0 chr11 19878060 19879311 -128904161 + Tigger1 DNA MER2_type 1137 2418 0 16028 47 4 1 chr11 19879488 19881440 -128902032 - L1P LINE L1 -786 5360 3403 202 216 0 0 chr11 19881540 19881577 -128901895 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 237 273 141 25 chr11 19881798 19881919 -128901553 - MIR SINE MIR -12 250 116 288 0 0 0 chr11 19882346 19882378 -128901094 + (TG)n Simple_repeat Simple_repeat 1 32 0 465 294 28 56 chr11 19882883 19883097 -128900375 + MIR SINE MIR 7 214 -48 614 262 70 47 chr11 19883498 19883796 -128899676 - L2 LINE L2 -49 3264 2960 398 239 299 0 chr11 19883812 19884023 -128899449 + L2 LINE L2 2761 3025 -288 22761 78 4 4 chr11 19884136 19887106 -128896366 - L1P LINE L1 -3165 2981 11 6537 121 44 3 chr11 19887145 19888197 -128895275 - L1MA5A LINE L1 -6 6291 5202 454 247 5 102 chr11 19888426 19888612 -128894860 + MIR SINE MIR 86 253 -9 204 245 202 32 chr11 19888644 19888738 -128894734 + L2 LINE L2 3188 3297 -16 363 286 106 70 chr11 19888767 19888812 -128894660 + MLT1H LTR MaLR 1 43 -506 327 96 0 0 chr11 19888812 19888864 -128894608 + (CA)n Simple_repeat Simple_repeat 2 53 0 363 286 106 70 chr11 19888864 19889280 -128894192 + MLT1H LTR MaLR 43 549 0 199 105 0 105 chr11 19889628 19889666 -128893806 - MIR SINE MIR -164 98 65 2185 195 32 36 chr11 19889682 19890184 -128893288 - MLT1D LTR MaLR 0 505 6 961 242 0 0 chr11 19891004 19891215 -128892257 + MIR SINE MIR 13 223 -39 239 316 128 8 chr11 19891333 19891450 -128892022 + MIR SINE MIR 16 146 -62 587 170 38 9 chr11 19891457 19891563 -128891909 - MLT1H1 LTR MaLR 0 555 447 539 329 112 8 chr11 19891601 19891850 -128891622 - MLT1H1 LTR MaLR -257 298 24 2485 135 17 6 chr11 19891932 19891961 -128891511 + L1MC/D LINE L1 5129 5156 -1177 4312 148 16 3 chr11 19891961 19892664 -128890808 - L1MC1 LINE L1 0 6333 5622 2485 135 17 6 chr11 19892664 19893130 -128890342 + L1MC1 LINE L1 5156 5625 -708 355 276 0 10 chr11 19893283 19893381 -128890091 + L3 LINE CR1 1390 1486 -91 596 242 42 33 chr11 19893628 19893843 -128889629 - MIR SINE MIR 0 262 46 482 227 120 13 chr11 19895282 19895432 -128888040 + MIR SINE MIR 81 246 -16 1025 203 0 0 chr11 19895650 19895827 -128887645 - MER45A DNA AcHobo 0 178 2 306 258 200 0 chr11 19896343 19896498 -128886974 + MIR SINE MIR 46 231 -31 811 227 114 14 chr11 19896577 19896797 -128886675 - MIR SINE MIR -12 250 9 289 298 11 99 chr11 19897258 19897449 -128886023 + L2 LINE L2 2886 3059 -213 200 200 243 14 chr11 19897578 19897648 -128885824 + L2 LINE L2 3227 3312 -1 207 241 13 89 chr11 19897976 19898055 -128885417 + MIR3 SINE MIR 112 184 -24 212 315 0 0 chr11 19898892 19898946 -128884526 + (TGGA)n Simple_repeat Simple_repeat 1 54 0 212 311 0 0 chr11 19899286 19899347 -128884125 - MIR SINE MIR -55 153 93 662 260 28 0 chr11 19899468 19899649 -128883823 + MIR SINE MIR 9 194 -68 778 243 11 0 chr11 19900298 19900487 -128882985 - MIR SINE MIR -22 240 50 330 286 86 4 chr11 19900534 19900665 -128882807 - MIR SINE MIR -60 148 44 213 43 0 65 chr11 19900734 19900780 -128882692 + (TTTTTG)n Simple_repeat Simple_repeat 2 44 0 2778 188 34 9 chr11 19900857 19901383 -128882089 + MLT1F LTR MaLR 1 539 -3 24 77 0 0 chr11 19901814 19901866 -128881606 + AT_rich Low_complexity Low_complexity 1 52 0 301 275 237 0 chr11 19901887 19902018 -128881454 + L2 LINE L2 3152 3313 0 202 264 35 35 chr11 19902909 19902996 -128880476 + MER5A DNA MER1_type 98 184 -5 237 182 197 0 chr11 19903080 19903146 -128880326 + MIR SINE MIR 112 190 -72 211 291 13 25 chr11 19904374 19904453 -128879019 + GA-rich Low_complexity Low_complexity 1 78 0 384 317 34 29 chr11 19904469 19904677 -128878795 - MIR SINE MIR -21 241 33 261 293 68 20 chr11 19904710 19904857 -128878615 - L1ME LINE L1 -333 5788 5635 613 303 68 8 chr11 19904970 19905204 -128878268 - MLT1J LTR MaLR -84 427 180 5385 131 13 44 chr11 19905253 19906125 -128877347 + Tigger1 DNA MER2_type 3 847 -1571 4129 164 12 3 chr11 19906225 19906962 -128876510 - L1 LINE L1 -1001 5145 4402 476 315 61 0 chr11 19906968 19907133 -128876339 + MIR SINE MIR 18 192 -70 2245 112 0 3 chr11 19907290 19907584 -128875888 + AluSx SINE Alu 1 293 -19 188 250 19 0 chr11 19907907 19907959 -128875513 + MIR3 SINE MIR 109 161 -47 313 303 42 8 chr11 19907982 19908101 -128875371 + MIR SINE MIR 19 141 -67 216 97 0 0 chr11 19908102 19908133 -128875339 + (GAA)n Simple_repeat Simple_repeat 2 32 0 186 103 0 0 chr11 19909664 19909693 -128873779 + (CA)n Simple_repeat Simple_repeat 1 29 0 333 0 0 0 chr11 19909727 19909764 -128873708 + (CA)n Simple_repeat Simple_repeat 2 38 0 292 375 0 8 chr11 19910474 19910594 -128872878 + MIR3 SINE MIR 37 155 -53 1923 143 39 0 chr11 19910789 19911069 -128872403 + AluJb SINE Alu 1 291 -21 306 164 0 0 chr11 19911107 19911162 -128872310 + A-rich Low_complexity Low_complexity 1 55 0 21 36 0 0 chr11 19911201 19911229 -128872243 + AT_rich Low_complexity Low_complexity 1 28 0 2506 56 0 0 chr11 19911293 19911596 -128871876 - L1PA3 LINE L1 -3 6152 5850 238 287 23 11 chr11 19912454 19912541 -128870931 + MIR SINE MIR 95 182 -80 445 212 188 6 chr11 19913012 19913177 -128870295 - MIR SINE MIR -9 253 59 565 244 93 26 chr11 19914005 19914198 -128869274 + MIR SINE MIR 46 251 -11 1578 95 0 0 chr11 19914463 19914674 -128868798 + L1PA14 LINE L1 5934 6144 -17 457 289 65 91 chr11 19914759 19915112 -128868360 - L2 LINE L2 0 3272 2929 370 196 54 0 chr11 19915133 19915225 -128868247 - MLT1J1 LTR MaLR 0 446 350 299 190 17 0 chr11 19915295 19915353 -128868119 - MLT1J2 LTR MaLR -384 66 8 443 375 20 4 chr11 19915356 19915604 -128867868 - L2 LINE L2 -458 2856 2605 1700 180 40 78 chr11 19915604 19916053 -128867419 - MSTB1 LTR MaLR 0 432 1 2324 43 71 0 chr11 19916674 19916954 -128866518 - AluY SINE Alu -11 300 1 2292 152 78 2 chr11 19917655 19918051 -128865421 - MSTB LTR MaLR 0 426 1 207 268 183 0 chr11 19918152 19918234 -128865238 - MIR SINE MIR -12 250 154 428 277 5 79 chr11 19918682 19918884 -128864588 - MIR SINE MIR 0 262 76 2072 109 0 0 chr11 19918932 19919208 -128864264 + AluSg SINE Alu 35 310 0 952 169 27 0 chr11 19919223 19919371 -128864101 + MER68 LTR ERV1 1 152 -410 524 333 153 18 chr11 19919738 19920183 -128863289 + L3 LINE CR1 1072 1576 -1 300 231 15 0 chr11 19920635 19920700 -128862772 - MLT1J1 LTR MaLR 0 446 381 * 419 250 130 39 chr11 19920699 19920907 -128862565 - MLT1J2 LTR MaLR -215 235 9 6644 150 36 23 chr11 19921709 19923838 -128859634 - L1MA7 LINE L1 0 6291 4140 1515 258 77 17 chr11 19924395 19924929 -128858543 - HsTC2 DNA Tc2 -2 1896 1331 320 284 113 21 chr11 19924953 19925094 -128858378 - MIR SINE MIR -50 212 59 1758 230 49 63 chr11 19925226 19925861 -128857611 - MER21B LTR ERV1 -48 815 98 474 206 0 22 chr11 19925914 19926006 -128857466 - MER21B LTR ERV1 -773 90 1 823 78 17 9 chr11 19926031 19926146 -128857326 + L1PA13 LINE L1 5972 6087 -76 364 214 95 0 chr11 19926146 19926230 -128857242 + MLT1D LTR MaLR 115 206 -299 396 36 91 0 chr11 19926235 19926290 -128857182 + L1PA13 LINE L1 6101 6160 -3 210 275 209 0 chr11 19926873 19926964 -128856508 - L2 LINE L2 -27 3245 3136 236 307 0 0 chr11 19927077 19927152 -128856320 - L2 LINE L2 -220 3052 2978 284 313 182 24 chr11 19927888 19928179 -128855293 - L2 LINE L2 -339 2975 2639 375 23 0 0 chr11 19928179 19928223 -128855249 + (CA)n Simple_repeat Simple_repeat 2 45 0 255 246 16 0 chr11 19929420 19929481 -128853991 + MIR SINE MIR 41 102 -106 441 244 66 70 chr11 19930438 19930651 -128852821 + MIR SINE MIR 36 247 -15 2095 98 0 44 chr11 19930664 19930990 -128852482 - AluSc SINE Alu 0 313 1 732 273 178 32 chr11 19931026 19931442 -128852030 + MLT1J1 LTR MaLR 1 446 0 216 45 23 45 chr11 19931462 19931506 -128851966 + (TTA)n Simple_repeat Simple_repeat 3 45 0 278 314 288 0 chr11 19931553 19931744 -128851728 + MIR SINE MIR 12 257 -5 201 154 0 0 chr11 19931772 19931811 -128851661 + (CAT)n Simple_repeat Simple_repeat 1 39 0 444 281 78 18 chr11 19932149 19932316 -128851156 - MIR SINE MIR -33 229 53 180 0 0 0 chr11 19932501 19932521 -128850951 + (T)n Simple_repeat Simple_repeat 1 20 0 486 223 27 47 chr11 19932551 19932699 -128850773 - MIR SINE MIR -26 236 92 216 0 0 0 chr11 19933402 19933426 -128850046 + (CCTG)n Simple_repeat Simple_repeat 3 26 0 391 302 93 5 chr11 19934136 19934341 -128849131 + MIR SINE MIR 16 238 -24 261 274 0 0 chr11 19934800 19934862 -128848610 - L2 LINE L2 -95 3177 3116 563 264 60 6 chr11 19935368 19935535 -128847937 + MIR SINE MIR 75 250 -12 755 74 0 0 chr11 19936066 19936161 -128847311 + Alu SINE Alu 202 296 -15 270 264 36 18 chr11 19936419 19936529 -128846943 + L2 LINE L2 3115 3226 -46 280 247 13 13 chr11 19938200 19938277 -128845195 - L2 LINE L2 -1 3312 3236 242 302 86 45 chr11 19938502 19938724 -128844748 - L2 LINE L2 -344 2970 2740 396 0 0 0 chr11 19938857 19938901 -128844571 + (TG)n Simple_repeat Simple_repeat 2 45 0 187 367 13 0 chr11 19939018 19939097 -128844375 - L2 LINE L2 -14 3258 3179 2036 126 70 6 chr11 19939266 19939608 -128843864 - MER47A DNA MER2_type -2 364 1 671 181 142 71 chr11 19939635 19939861 -128843611 - MIR SINE MIR -4 258 17 312 273 11 23 chr11 19939926 19940014 -128843458 + L2 LINE L2 3209 3295 -18 197 244 0 0 chr11 19941258 19941299 -128842173 + L2 LINE L2 3191 3231 -82 645 294 116 45 chr11 19941304 19941666 -128841806 - L2 LINE L2 -1 3271 2837 886 175 73 6 chr11 19941666 19941843 -128841629 + MER5A DNA MER1_type 1 189 0 645 294 116 45 chr11 19941843 19942079 -128841393 - L2 LINE L2 -435 2837 2619 314 280 40 0 chr11 19942075 19942150 -128841322 + L2 LINE L2 3191 3268 -4 * 288 153 51 17 chr11 19942283 19942342 -128841130 + L2 LINE L2 3210 3270 -2 394 198 164 9 chr11 19942353 19942469 -128841003 - MIR SINE MIR -83 179 46 247 234 78 31 chr11 19943137 19943201 -128840271 - MIR SINE MIR -86 176 110 349 264 78 71 chr11 19943367 19943522 -128839950 - MIR SINE MIR -35 173 16 468 316 15 8 chr11 19943784 19943917 -128839555 - L2 LINE L2 -1 3312 3179 234 81 0 0 chr11 19944044 19944081 -128839391 + (TG)n Simple_repeat Simple_repeat 1 37 0 527 212 9 0 chr11 19945007 19945120 -128838352 - MIR SINE MIR -43 219 106 296 303 141 30 chr11 19945237 19945435 -128838037 - MIR SINE MIR -17 245 26 288 323 48 36 chr11 19945784 19945951 -128837521 - MIR SINE MIR -74 188 20 905 173 10 58 chr11 19946121 19946329 -128837143 + L1MB8 LINE L1 5921 6118 -60 186 265 61 0 chr11 19948293 19948342 -128835130 - L2 LINE L2 -63 3209 3158 1888 181 95 14 chr11 19948415 19948845 -128834627 + MLT1C LTR MaLR 1 465 -2 593 291 57 49 chr11 19949758 19950013 -128833459 + MIR SINE MIR 1 233 -29 261 237 33 6 chr11 19950041 19950116 -128833356 + MIR SINE MIR 92 151 -57 1680 236 22 5 chr11 19950514 19950958 -128832514 - L2 LINE L2 -688 2626 2175 792 178 0 0 chr11 19951711 19951840 -128831632 + FLAM_C SINE Alu 3 131 -2 233 362 65 7 chr11 19952131 19952269 -128831203 + MIR SINE MIR 89 234 -28 216 111 0 0 chr11 19952965 19953001 -128830471 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 1777 193 11 22 chr11 19953550 19953907 -128829565 + MLT1A1 LTR MaLR 1 353 -12 203 238 0 0 chr11 19953910 19953952 -128829520 + (CAA)n Simple_repeat Simple_repeat 2 43 0 207 208 21 42 chr11 19954056 19954104 -128829368 - L2 LINE L2 -65 3207 3161 720 293 50 0 chr11 19954119 19954317 -128829155 - MIR SINE MIR -22 240 33 218 263 58 89 chr11 19955182 19955372 -128828100 + L2 LINE L2 2774 2957 -357 378 236 124 79 chr11 19956407 19956648 -128826824 - MIR SINE MIR 0 262 11 335 329 82 12 chr11 19956724 19956894 -128826578 + MIR SINE MIR 13 194 -68 241 331 53 46 chr11 19957755 19957906 -128825566 - MIR SINE MIR -18 244 93 352 231 168 17 chr11 19958099 19958230 -128825242 + MIR SINE MIR 4 150 -58 655 313 99 45 chr11 19958574 19958999 -128824473 + L2 LINE L2 2825 3272 0 570 240 74 6 chr11 19959917 19960095 -128823377 - MIR3 SINE MIR -3 205 8 2254 127 36 30 chr11 19961852 19962214 -128821258 + THE1B LTR MaLR 1 364 0 315 0 0 0 chr11 19962720 19962755 -128820717 + (CA)n Simple_repeat Simple_repeat 2 36 0 2375 110 0 0 chr11 19963432 19963732 -128819740 + AluSc SINE Alu 1 300 -9 267 321 20 73 chr11 19964201 19964447 -128819025 + L2 LINE L2 3023 3255 -58 486 311 31 42 chr11 19965184 19965375 -128818097 - MIR SINE MIR -44 218 34 591 259 100 27 chr11 19965514 19965734 -128817738 - MIR SINE MIR -21 241 6 475 304 25 39 chr11 19965916 19966120 -128817352 - L2 LINE L2 -48 3265 3065 * 1639 258 67 31 chr11 19966113 19966553 -128816919 - L2 LINE L2 -607 2707 2243 478 216 182 7 chr11 19966553 19966701 -128816771 - MER104 DNA MER2_type -2 178 5 1639 258 67 31 chr11 19966701 19966799 -128816673 - L2 LINE L2 -1071 2243 2150 343 78 0 0 chr11 19966803 19966854 -128816618 - MADE1 DNA Mariner 0 80 30 356 275 0 0 chr11 19967200 19967280 -128816192 + MIR3 SINE MIR 111 190 -18 288 288 159 12 chr11 19967315 19967478 -128815994 - MIR SINE MIR -48 214 28 961 201 10 20 chr11 19967978 19968177 -128815295 - MER20 DNA MER1_type 0 219 23 210 207 17 17 chr11 19968421 19968479 -128814993 + CT-rich Low_complexity Low_complexity 2 59 0 2863 0 0 0 chr11 19968489 19968788 -128814684 - AluYa5 SINE Alu -12 299 1 356 243 18 118 chr11 19969003 19969172 -128814300 + L2 LINE L2 3159 3310 -3 253 248 133 44 chr11 19969164 19969277 -128814195 - L2 LINE L2 -16 3297 3175 * 618 297 110 17 chr11 19969593 19969829 -128813643 + MIR SINE MIR 2 259 -3 235 246 0 16 chr11 19970793 19970854 -128812618 - MIR SINE MIR -82 126 67 433 365 20 29 chr11 19970867 19971111 -128812361 - MIR SINE MIR -13 249 8 450 219 199 27 chr11 19971203 19971349 -128812123 + MER5A DNA MER1_type 16 186 -3 234 263 111 24 chr11 19971375 19971484 -128811988 - MIR SINE MIR -69 193 66 23 33 0 0 chr11 19971980 19972010 -128811462 + AT_rich Low_complexity Low_complexity 1 30 0 646 233 144 19 chr11 19972069 19972289 -128811183 - MIR SINE MIR 0 262 13 253 250 33 0 chr11 19973009 19973069 -128810403 + MIR SINE MIR 189 250 -12 386 308 127 11 chr11 19973183 19973387 -128810085 - MIR SINE MIR -16 246 20 287 283 75 47 chr11 19973681 19973787 -128809685 - MIR3 SINE MIR -32 176 68 864 211 75 160 chr11 19973900 19974508 -128808964 - MLT1E LTR MaLR 0 567 27 236 211 224 0 chr11 19974740 19974816 -128808656 - MIR3 SINE MIR -25 183 91 186 341 119 0 chr11 19975059 19975133 -128808339 - L2 LINE L2 -216 3056 2992 2617 96 19 26 chr11 19975133 19975510 -128807962 - THE1C LTR MaLR -1 374 1 186 341 119 0 chr11 19975510 19975561 -128807911 - L2 LINE L2 -280 2992 2916 197 261 72 130 chr11 19976567 19976705 -128806767 - MIR SINE MIR -13 195 65 382 310 31 16 chr11 19977470 19977599 -128805873 + L3 LINE CR1 1369 1499 -78 300 27 0 0 chr11 19977721 19977758 -128805714 + (TG)n Simple_repeat Simple_repeat 1 37 0 265 304 144 0 chr11 19977930 19978045 -128805427 + MIR SINE MIR 17 145 -63 3447 177 69 11 chr11 19978045 19978713 -128804759 - MER44D DNA MER2_type 0 605 27 274 248 8 101 chr11 19978725 19978854 -128804618 + MIR SINE MIR 146 262 0 481 247 20 53 chr11 19979644 19979794 -128803678 + MIR SINE MIR 114 258 -4 863 289 4 13 chr11 19980194 19980426 -128803046 - MIR SINE MIR -20 242 13 255 255 99 43 chr11 19981424 19981565 -128801907 + MIR3 SINE MIR 2 150 -58 483 209 38 0 chr11 19981633 19981738 -128801734 - MER103 DNA DNA -34 132 24 718 201 15 0 chr11 19981761 19981895 -128801577 - MER58B DNA MER1_type -15 326 191 433 259 154 65 chr11 19982264 19982465 -128801007 + MIR SINE MIR 34 252 -10 410 283 19 44 chr11 19984011 19984170 -128799302 + MIR SINE MIR 53 207 -55 324 221 44 0 chr11 19984281 19984349 -128799123 - MIR SINE MIR -111 151 81 305 293 83 74 chr11 19985579 19985608 -128797864 - Charlie8 DNA MER1_type -2087 330 303 2424 79 0 3 chr11 19985608 19985900 -128797572 + AluSc SINE Alu 1 291 -18 305 293 83 74 chr11 19985900 19986099 -128797373 - Charlie8 DNA MER1_type -2114 303 100 338 312 123 7 chr11 19986903 19987057 -128796415 - MIR SINE MIR -7 255 84 341 314 202 16 chr11 19987459 19987707 -128795765 - L1MC4a LINE L1 -1904 5904 5611 525 306 17 78 chr11 19987887 19988181 -128795291 - LTR16A LTR ERVL -159 291 16 393 281 62 0 chr11 19988212 19988340 -128795132 + MLT1J LTR MaLR 90 225 -286 23 0 0 0 chr11 19988479 19988502 -128794970 + AT_rich Low_complexity Low_complexity 1 23 0 321 237 207 7 chr11 19989191 19989326 -128794146 - MIR SINE MIR -9 253 92 774 282 53 8 chr11 19989406 19989651 -128793821 - MIR SINE MIR -2 260 5 369 308 56 0 chr11 19989694 19989837 -128793635 - MIR3 SINE MIR -10 198 48 372 303 61 61 chr11 19990266 19990464 -128793008 + MIR SINE MIR 62 259 -3 396 302 94 13 chr11 19990479 19990638 -128792834 - MIR SINE MIR -2 260 89 546 238 166 6 chr11 19990856 19991037 -128792435 + LTR33 LTR ERVL 2 211 -310 375 236 16 49 chr11 19991140 19991173 -128792299 + LTR33 LTR ERVL 395 428 -93 1709 201 103 0 chr11 19991173 19991532 -128791940 + MSTD LTR MaLR 1 396 0 375 236 16 49 chr11 19991532 19991621 -128791851 + LTR33 LTR ERVL 428 513 -8 276 204 28 197 chr11 19992792 19992934 -128790538 - MIR SINE MIR -12 250 133 211 224 69 0 chr11 19993011 19993069 -128790403 + MIR SINE MIR 105 166 -96 445 260 126 39 chr11 19993113 19993188 -128790284 - MIR SINE MIR 0 262 195 1852 188 93 36 chr11 19993188 19993630 -128789842 + MLT1C LTR MaLR 1 467 0 445 260 126 39 chr11 19993630 19993785 -128789687 - MIR SINE MIR -67 195 12 399 285 42 18 chr11 19994458 19994623 -128788849 + L1ME LINE L1 5634 5802 -319 339 44 0 0 chr11 19994819 19994864 -128788608 + (TC)n Simple_repeat Simple_repeat 2 46 0 315 0 0 0 chr11 19994863 19994898 -128788574 + (TG)n Simple_repeat Simple_repeat 2 36 0 * 211 219 16 16 chr11 19994898 19994962 -128788510 + GA-rich Low_complexity Low_complexity 2 65 0 22 0 0 0 chr11 19995739 19995761 -128787711 + AT_rich Low_complexity Low_complexity 1 22 0 353 228 25 0 chr11 19996091 19996170 -128787302 + MIR SINE MIR 118 198 -64 30 45 0 0 chr11 19996400 19996444 -128787028 + AT_rich Low_complexity Low_complexity 1 44 0 476 273 9 0 chr11 19997273 19997383 -128786089 - MIR3 SINE MIR -16 192 82 397 289 16 16 chr11 19998376 19998504 -128784968 + MER117 DNA MER1_type 28 155 -42 334 233 204 0 chr11 19998533 19998636 -128784836 + L2 LINE L2 3189 3312 -1 250 319 104 40 chr11 19998640 19998883 -128784589 - MIR SINE MIR -1 261 8 210 321 68 53 chr11 19999107 19999297 -128784175 + MIR3 SINE MIR 15 207 -1 347 277 30 20 chr11 19999423 19999524 -128783948 + MIR SINE MIR 49 150 -112 908 222 16 0 chr11 19999529 19999714 -128783758 + MER5A DNA MER1_type 1 188 -1 690 209 44 95 chr11 19999723 19999774 -128783698 + MER112 DNA MER1_type 1 53 -207 1733 112 0 12 chr11 19999774 20000032 -128783440 + AluSq SINE Alu 1 255 -58 690 209 44 95 chr11 20000032 20000253 -128783219 + MER112 DNA MER1_type 53 259 -1 2209 34 42 0 chr11 20001086 20001351 -128782121 - L1PA5 LINE L1 -4 6150 5875 186 313 0 60 chr11 20001407 20001474 -128781998 - MIR SINE MIR -2 260 198 426 250 56 0 chr11 20001500 20001608 -128781864 - MIR SINE MIR -121 141 28 706 282 94 4 chr11 20001703 20001937 -128781535 - MIR SINE MIR -6 256 2 282 345 28 14 chr11 20001953 20002098 -128781374 + L2 LINE L2 2648 2794 -520 806 279 120 39 chr11 20002370 20002753 -128780719 + MLT1K LTR MaLR 153 566 -22 226 208 57 0 chr11 20002954 20003007 -128780465 - MIR SINE MIR -103 105 50 889 221 150 9 chr11 20003146 20003372 -128780100 + MIR SINE MIR 4 261 -1 253 256 44 44 chr11 20004149 20004239 -128779233 - MIR SINE MIR -87 121 32 191 172 115 126 chr11 20004334 20004421 -128779051 - L3 LINE CR1 -896 681 596 1587 168 0 41 chr11 20004526 20004842 -128778630 - AluJo SINE Alu -7 305 3 419 279 41 34 chr11 20004909 20004922 -128778550 + L2 LINE L2 3156 3167 -146 1018 107 0 19 chr11 20004922 20005081 -128778391 - L1MD1 LINE L1 0 6242 6087 419 279 41 34 chr11 20005081 20005214 -128778258 + L2 LINE L2 3167 3303 -10 700 216 202 5 chr11 20005376 20005584 -128777888 + Charlie2a DNA MER1_type 1 249 -2613 477 238 7 26 chr11 20005585 20005736 -128777736 + Charlie2a DNA MER1_type 869 1016 -1846 350 170 38 57 chr11 20005745 20005851 -128777621 + Charlie2a DNA MER1_type 2759 2862 0 357 276 138 51 chr11 20006552 20006748 -128776724 - MIR SINE MIR 0 262 50 664 256 23 12 chr11 20006938 20007110 -128776362 + AluJb SINE Alu 135 308 -4 309 159 0 0 chr11 20007112 20007175 -128776297 + GA-rich Low_complexity Low_complexity 3 65 0 310 200 46 0 chr11 20007181 20007246 -128776226 - MER103 DNA DNA -87 79 12 406 386 33 0 chr11 20008209 20008419 -128775053 - L3 LINE CR1 -3 1574 1358 * 892 272 27 27 chr11 20008417 20008678 -128774794 - MIR SINE MIR 0 262 2 515 293 113 13 chr11 20008686 20008915 -128774557 - MIR SINE MIR 0 262 11 230 222 103 68 chr11 20008937 20009054 -128774418 - MIR SINE MIR -121 141 21 501 280 21 14 chr11 20009320 20009463 -128774009 + MIR SINE MIR 32 175 -87 384 308 123 20 chr11 20009733 20009928 -128773544 + MIR SINE MIR 2 216 -46 276 156 0 0 chr11 20010269 20010314 -128773158 + MIR SINE MIR 210 254 -8 331 270 38 106 chr11 20010943 20011180 -128772292 + MIR SINE MIR 22 242 -20 1423 77 116 5 chr11 20011861 20012068 -128771404 - MER30 DNA MER1_type 0 230 1 182 208 21 0 chr11 20013939 20013987 -128769485 + (TAA)n Simple_repeat Simple_repeat 3 51 0 354 324 13 1 chr11 20014157 20014280 -128769192 - MIR SINE MIR -68 140 15 501 283 100 35 chr11 20014510 20014740 -128768732 - MIR SINE MIR -10 252 8 2227 71 3 32 chr11 20014777 20015087 -128768385 + AluY SINE Alu 1 301 -10 483 346 24 19 chr11 20016536 20016747 -128766725 - MIR SINE MIR -11 251 40 2576 175 12 24 chr11 20016897 20017389 -128766083 + MER66B LTR ERV1 1 486 0 214 278 83 19 chr11 20017557 20017665 -128765807 - MIR SINE MIR -68 140 26 257 103 10 82 chr11 20018039 20018136 -128765336 + (TCTCC)n Simple_repeat Simple_repeat 2 91 0 472 361 26 9 chr11 20020315 20020545 -128762927 - MIR SINE MIR -6 256 23 242 259 46 76 chr11 20020730 20020861 -128762611 + MIR3 SINE MIR 46 172 -36 1813 34 102 0 chr11 20020909 20021144 -128762328 + AluSp SINE Alu 35 293 -20 21 0 0 0 chr11 20021150 20021171 -128762301 + AT_rich Low_complexity Low_complexity 1 21 0 756 274 156 2 chr11 20021290 20021661 -128761811 - LTR16A LTR ERVL 0 491 16 332 307 136 14 chr11 20022001 20022030 -128761442 - MER91A DNA MER1_type -39 157 133 279 0 0 0 chr11 20022030 20022061 -128761411 + (CCCCAG)n Simple_repeat Simple_repeat 2 32 0 332 307 136 14 chr11 20022061 20022171 -128761301 - MER91A DNA MER1_type -63 133 1 508 275 133 17 chr11 20022302 20022542 -128760930 + L1ME4a LINE L1 5598 5865 -256 1634 229 60 4 chr11 20022663 20023117 -128760355 - Charlie4a DNA MER1_type 0 508 30 503 342 30 15 chr11 20023334 20023533 -128759939 - MIR SINE MIR -49 213 12 353 259 121 20 chr11 20024220 20024377 -128759095 + MIR SINE MIR 2 212 -50 471 203 187 0 chr11 20024377 20024500 -128758972 - MLT1H LTR MaLR -2 593 448 2319 167 16 98 chr11 20024615 20025117 -128758355 - LTR32 LTR ERVL -2 469 9 753 234 98 17 chr11 20025110 20025345 -128758127 - MLT1H LTR MaLR -295 254 1 * 211 250 0 0 chr11 20025346 20025390 -128758082 + MIR SINE MIR 207 250 -12 319 268 36 43 chr11 20025399 20025532 -128757940 - MIR SINE MIR -68 140 11 312 336 16 25 chr11 20025536 20025658 -128757814 + MIR SINE MIR 79 199 -63 596 286 60 0 chr11 20026550 20026718 -128756754 + MIR SINE MIR 29 206 -56 574 182 38 50 chr11 20027058 20027217 -128756255 + MER103 DNA DNA 2 158 -8 266 196 0 0 chr11 20027968 20028019 -128755453 - MIR SINE MIR -140 122 72 188 316 108 38 chr11 20029346 20029504 -128753968 - MIR3 SINE MIR -39 169 1 353 305 115 40 chr11 20029727 20029901 -128753571 + MER5A DNA MER1_type 1 187 -2 756 244 104 5 chr11 20029916 20030117 -128753355 + MIR SINE MIR 32 252 -10 27 49 0 0 chr11 20030140 20030181 -128753291 + AT_rich Low_complexity Low_complexity 1 41 0 308 286 0 0 chr11 20030950 20031027 -128752445 - MIR SINE MIR -65 143 67 1891 118 7 4 chr11 20031043 20031323 -128752149 + AluSx SINE Alu 1 281 -31 1739 145 0 30 chr11 20032222 20032568 -128750904 - AluJb SINE Alu 0 337 1 224 282 68 39 chr11 20032921 20033024 -128750448 - MIR SINE MIR -72 190 85 494 270 0 0 chr11 20033675 20033786 -128749686 - MIR SINE MIR -147 115 5 524 254 71 119 chr11 20033864 20034285 -128749187 + L2 LINE L2 2871 3271 -1 359 252 97 58 chr11 20034759 20034965 -128748507 - MIR SINE MIR -20 242 29 22 0 0 0 chr11 20035299 20035321 -128748151 + AT_rich Low_complexity Low_complexity 1 22 0 559 240 13 45 chr11 20035529 20035683 -128747789 + L2 LINE L2 3165 3313 0 247 164 82 66 chr11 20035805 20035866 -128747606 + L2 LINE L2 3200 3261 -11 333 339 37 2 chr11 20036340 20036515 -128746957 + MIR SINE MIR 7 184 -78 4944 163 30 22 chr11 20036515 20037619 -128745853 + L1MB5 LINE L1 5009 6136 -38 2039 109 17 0 chr11 20037619 20037921 -128745551 + AluSq SINE Alu 1 307 -6 4944 163 30 22 chr11 20037921 20037961 -128745511 + L1MB5 LINE L1 6136 6174 0 272 287 53 21 chr11 20038459 20038553 -128744919 - MIR3 SINE MIR -17 191 95 712 273 10 12 chr11 20038823 20039034 -128744438 + MIR SINE MIR 10 261 -1 994 253 70 55 chr11 20039269 20039668 -128743804 + L2 LINE L2 2909 3313 0 303 288 242 26 chr11 20039733 20039886 -128743586 - MIR SINE MIR -14 248 63 448 302 141 19 chr11 20040279 20040492 -128742980 + MIR SINE MIR 30 262 0 204 86 14 93 chr11 20040511 20040593 -128742879 + MIR SINE MIR 128 256 -6 559 301 102 34 chr11 20040816 20041168 -128742304 - L2 LINE L2 -17 3296 2921 272 327 43 83 chr11 20041745 20042023 -128741449 + L2 LINE L2 2997 3263 -9 * 306 218 51 13 chr11 20041996 20042074 -128741398 - L2 LINE L2 -2 3311 3231 406 269 109 8 chr11 20042195 20042314 -128741158 - MIR3 SINE MIR -70 138 8 518 158 219 0 chr11 20042596 20042710 -128740762 - L1ME4a LINE L1 0 6121 5983 218 325 183 16 chr11 20042923 20043049 -128740423 + L2 LINE L2 3123 3269 -3 231 276 55 39 chr11 20043158 20043285 -128740187 + L2 LINE L2 3183 3311 -2 436 250 101 27 chr11 20043297 20043445 -128740027 - MIR SINE MIR -41 221 63 554 242 23 8 chr11 20044933 20045061 -128738411 + MER58B DNA MER1_type 212 341 0 197 132 0 151 chr11 20045099 20045152 -128738320 - MIR SINE MIR -149 113 69 626 267 41 12 chr11 20045354 20045526 -128737946 + MIR SINE MIR 66 242 -20 605 314 9 65 chr11 20045703 20045932 -128737540 + MIR SINE MIR 47 262 0 1326 126 372 0 chr11 20046534 20046811 -128736661 - MSTC LTR MaLR -48 380 1 249 244 0 0 chr11 20046812 20046857 -128736615 - MIR SINE MIR -8 254 210 645 259 46 23 chr11 20046857 20047073 -128736399 - L1ME LINE L1 -384 5778 5558 256 288 147 5 chr11 20047182 20047373 -128736099 - L1ME LINE L1 -913 5233 5016 * 44065 46 2 2 chr11 20047369 20053517 -128729955 - L1PA4 LINE L1 -2 6153 7 354 301 25 37 chr11 20053749 20053912 -128729560 - MLT1J1 LTR MaLR 0 446 286 355 260 90 0 chr11 20053976 20054076 -128729396 + L2 LINE L2 3205 3313 0 22 0 0 0 chr11 20054285 20054307 -128729165 + AT_rich Low_complexity Low_complexity 1 22 0 317 189 0 0 chr11 20054460 20054513 -128728959 + MER117 DNA MER1_type 109 161 -36 225 151 0 0 chr11 20055218 20055271 -128728201 + (CAAA)n Simple_repeat Simple_repeat 4 56 0 220 256 141 70 chr11 20055411 20055567 -128727905 - L2 LINE L2 -180 3092 2926 287 297 11 0 chr11 20055903 20055992 -128727480 + MIR SINE MIR 41 130 -78 976 268 17 0 chr11 20055992 20056231 -128727241 + MIR SINE MIR 2 244 -18 222 320 103 0 chr11 20057524 20057621 -128725851 - L2 LINE L2 -25 3247 3141 1251 187 16 0 chr11 20058003 20058282 -128725190 - L1MC/D LINE L1 -731 5511 5229 502 185 11 0 chr11 20058284 20058376 -128725096 - MIR SINE MIR -65 197 105 292 290 74 34 chr11 20058833 20058995 -128724477 + MIR SINE MIR 22 189 -61 721 281 25 5 chr11 20059002 20059198 -128724274 + MIR SINE MIR 13 212 -50 783 266 180 37 chr11 20059299 20059705 -128723767 - LTR16C LTR ERVL -27 464 1 716 212 20 7 chr11 20059709 20059860 -128723612 - MIR SINE MIR -47 215 63 1635 154 22 45 chr11 20059864 20060176 -128723296 - AluJb SINE Alu -7 305 1 876 246 12 23 chr11 20060188 20060444 -128723028 + MER112 DNA MER1_type 7 259 -1 316 229 46 37 chr11 20061004 20061113 -128722359 - MIR SINE MIR -84 178 69 590 297 84 5 chr11 20061199 20061401 -128722071 + MIR SINE MIR 32 249 -13 869 239 51 47 chr11 20062647 20062902 -128720570 - MIR SINE MIR -1 261 6 1422 229 45 6 chr11 20064077 20064409 -128719063 - LTR16C LTR ERVL 0 491 147 1166 254 15 8 chr11 20064672 20064932 -128718540 + MIR SINE MIR 1 262 0 386 294 87 8 chr11 20064932 20065058 -128718414 - MIR SINE MIR -121 141 6 311 181 28 28 chr11 20066154 20066226 -128717246 - MLT1K LTR MaLR -327 261 190 2195 113 0 0 chr11 20066305 20066607 -128716865 - AluSg SINE Alu -8 302 1 409 295 94 41 chr11 20066618 20066634 -128716838 - L2 LINE L2 -257 3015 3001 1273 221 103 36 chr11 20066634 20067072 -128716400 - MLT1C LTR MaLR 0 467 1 409 295 94 41 chr11 20067072 20067421 -128716051 - L2 LINE L2 -271 3001 2629 2161 262 46 33 chr11 20067421 20067477 -128715995 - L2 LINE L2 -25 3288 3234 2061 120 0 16 chr11 20067477 20067793 -128715679 + AluY SINE Alu 1 311 0 2161 262 46 33 chr11 20067793 20068693 -128714779 - L2 LINE L2 -79 3234 2319 831 277 29 25 chr11 20068696 20068834 -128714638 - MIR SINE MIR -18 244 103 2235 120 45 25 chr11 20068834 20069191 -128714281 + THE1B LTR MaLR 1 364 0 831 277 29 25 chr11 20069191 20069294 -128714178 - MIR SINE MIR -159 103 2 28 0 0 0 chr11 20069655 20069683 -128713789 + AT_rich Low_complexity Low_complexity 1 28 0 469 304 50 8 chr11 20070386 20070585 -128712887 - MIR SINE MIR -16 246 42 506 232 196 0 chr11 20070977 20071115 -128712357 + MER5A DNA MER1_type 25 189 0 211 269 151 8 chr11 20072067 20072186 -128711286 - MIR SINE MIR -3 259 124 2101 174 102 9 chr11 20072853 20073313 -128710159 - MLT1D LTR MaLR -2 503 1 194 281 31 21 chr11 20073581 20073677 -128709795 - L2 LINE L2 -263 3009 2913 290 271 21 21 chr11 20074048 20074144 -128709328 - MIR SINE MIR -48 214 119 920 150 0 11 chr11 20074814 20074994 -128708478 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 2894 62 6 0 chr11 20075225 20075578 -128707894 - THE1A LTR MaLR 0 355 1 11992 87 10 1 chr11 20075578 20077145 -128706327 - THE1A-int LTR MaLR 0 1580 1 2587 91 3 19 chr11 20077145 20077506 -128705966 - THE1A LTR MaLR 0 355 1 732 221 113 5 chr11 20077955 20078150 -128705322 + MIR SINE MIR 36 251 -11 206 258 30 15 chr11 20078214 20078280 -128705192 - L2 LINE L2 0 3313 3247 189 107 0 0 chr11 20078647 20078675 -128704797 + (TC)n Simple_repeat Simple_repeat 2 29 0 578 200 26 0 chr11 20078681 20078796 -128704676 - L1MC1 LINE L1 -6 6327 6210 413 191 110 44 chr11 20079919 20080055 -128703417 + MER103 DNA DNA 8 152 -14 321 185 33 87 chr11 20080067 20080159 -128703313 - L1MCa LINE L1 -4363 2063 1977 223 360 0 30 chr11 20080662 20080762 -128702710 + L3 LINE CR1 1306 1402 -175 1048 319 100 36 chr11 20080938 20081724 -128701748 + L2 LINE L2 2469 3313 0 295 306 144 58 chr11 20081984 20082157 -128701315 + L3b LINE CR1 1378 1565 -18 6385 28 1 5 chr11 20082833 20083580 -128699892 - L1PA4 LINE L1 0 6155 5412 220 216 0 20 chr11 20083702 20083753 -128699719 + (TG)n Simple_repeat Simple_repeat 1 50 0 253 315 25 68 chr11 20084582 20084663 -128698809 + MER117 DNA MER1_type 42 114 -83 2450 188 26 18 chr11 20084663 20085162 -128698310 - MLT1D LTR MaLR -1 504 2 253 315 25 68 chr11 20085162 20085242 -128698230 + MER117 DNA MER1_type 114 196 -1 228 271 29 0 chr11 20085315 20085385 -128698087 - MIR SINE MIR -6 256 185 199 241 323 0 chr11 20085432 20085565 -128697907 + L2 LINE L2 2970 3145 -168 2070 101 30 0 chr11 20086413 20086710 -128696762 - AluSq SINE Alu -7 306 1 738 272 27 5 chr11 20086835 20087019 -128696453 + MIR SINE MIR 70 257 -5 589 254 21 7 chr11 20087215 20087357 -128696115 - MIR3 SINE MIR -32 176 33 487 236 155 0 chr11 20087459 20087620 -128695852 - MER5A DNA MER1_type 0 189 4 1446 180 3 10 chr11 20087630 20087930 -128695542 - MER33 DNA MER1_type 0 324 27 839 116 0 0 chr11 20088004 20088133 -128695339 - AluY SINE Alu 0 311 183 510 228 97 0 chr11 20089150 20089264 -128694208 - L2 LINE L2 0 3313 3189 255 260 39 0 chr11 20090357 20090434 -128693038 - MER116 DNA Mariner 0 80 1 288 286 110 0 chr11 20090439 20090530 -128692942 - MIR SINE MIR -3 259 159 807 249 112 13 chr11 20090530 20090763 -128692709 - LTR16A1 LTR ERVL 0 457 202 312 277 99 10 chr11 20090950 20091051 -128692421 - MIR SINE MIR -97 165 56 500 280 101 6 chr11 20091679 20091847 -128691625 + MIR SINE MIR 3 186 -76 1936 114 0 0 chr11 20092070 20092333 -128691139 + AluSx SINE Alu 1 263 -49 279 0 0 0 chr11 20092336 20092367 -128691105 + (TAAAA)n Simple_repeat Simple_repeat 4 34 0 22 0 0 0 chr11 20092615 20092637 -128690835 + AT_rich Low_complexity Low_complexity 1 22 0 227 321 38 76 chr11 20093147 20093272 -128690200 - L2 LINE L2 0 3272 3153 312 140 0 35 chr11 20093272 20093329 -128690143 + MER5B DNA MER1_type 1 55 -123 360 260 0 0 chr11 20093352 20093429 -128690043 - MIR SINE MIR -74 188 112 557 201 87 47 chr11 20093546 20093695 -128689777 - MIR SINE MIR -76 186 32 749 262 33 10 chr11 20094412 20094660 -128688812 - MIR SINE MIR 0 262 8 338 395 40 0 chr11 20095224 20095401 -128688071 - MIR SINE MIR -78 184 1 284 318 130 32 chr11 20095582 20095736 -128687736 - MIR SINE MIR -2 260 92 1907 177 59 35 chr11 20095785 20096209 -128687263 - MER63B DNA MER1_type -2 434 1 627 263 170 19 chr11 20096552 20096970 -128686502 - L1ME4a LINE L1 -35 6086 5606 2784 214 41 36 chr11 20097095 20097116 -128686356 + L1ME2 LINE L1 5263 5282 -896 1860 193 25 3 chr11 20097116 20097469 -128686003 - MLT1A1 LTR MaLR 0 365 5 2784 214 41 36 chr11 20097469 20097798 -128685674 + L1ME2 LINE L1 5282 5608 -570 1760 176 54 77 chr11 20097798 20098276 -128685196 + MLT1C LTR MaLR 1 467 0 2784 214 41 36 chr11 20098276 20098780 -128684692 + L1ME2 LINE L1 5608 6170 -8 429 316 44 0 chr11 20099327 20099463 -128684009 + MIR SINE MIR 109 250 -12 527 275 88 5 chr11 20100508 20100701 -128682771 - L1MC4a LINE L1 -1877 5931 5723 413 303 158 23 chr11 20101135 20101356 -128682116 - MIR SINE MIR -6 256 6 720 318 50 4 chr11 20101386 20101625 -128681847 - MIR SINE MIR 0 262 13 10105 35 1 4 chr11 20101679 20103650 -128679822 + L1PA4 LINE L1 4187 6155 0 1232 261 106 109 chr11 20104091 20104996 -128678476 - L2 LINE L2 -345 2969 2068 266 266 0 32 chr11 20105731 20105825 -128677647 - MIR SINE MIR 0 262 172 1038 231 14 5 chr11 20105837 20106053 -128677419 - MIR SINE MIR -43 219 2 621 281 49 49 chr11 20106053 20106259 -128677213 - MIR SINE MIR -56 206 1 557 229 157 74 chr11 20106739 20107076 -128676396 - L2 LINE L2 -495 2819 2455 933 284 5 0 chr11 20107120 20107335 -128676137 + MIR SINE MIR 33 248 -14 246 62 0 0 chr11 20107340 20107372 -128676100 + (TTA)n Simple_repeat Simple_repeat 1 32 0 23 33 0 0 chr11 20108097 20108127 -128675345 + AT_rich Low_complexity Low_complexity 1 30 0 2696 150 2 13 chr11 20108302 20108775 -128674697 - L1MB3 LINE L1 0 6183 5716 412 343 42 19 chr11 20108934 20109150 -128674322 + MIR SINE MIR 39 259 -3 190 333 178 11 chr11 20109213 20109303 -128674169 - MIR SINE MIR -64 144 40 295 272 38 8 chr11 20109346 20109479 -128673993 + MER117 DNA MER1_type 27 197 0 875 303 22 4 chr11 20110662 20110893 -128672579 - MIR SINE MIR -6 256 22 486 323 21 5 chr11 20111274 20111466 -128672006 - MER117 DNA MER1_type 0 197 3 592 293 32 45 chr11 20112197 20112443 -128671029 - MIR SINE MIR -10 252 10 262 217 72 12 chr11 20112907 20112990 -128670482 + MIR SINE MIR 128 215 -47 408 88 0 0 chr11 20113302 20113359 -128670113 + (CAT)n Simple_repeat Simple_repeat 2 58 0 270 333 98 25 chr11 20113385 20113589 -128669883 - MIR SINE MIR -36 226 8 202 158 26 0 chr11 20113635 20113673 -128669799 - MER5A DNA MER1_type -76 113 75 720 268 11 17 chr11 20114164 20114343 -128669129 + MER5B DNA MER1_type 1 178 0 242 363 114 21 chr11 20114360 20114597 -128668875 + L2 LINE L2 3014 3272 0 437 310 56 0 chr11 20114618 20114760 -128668712 - L2 LINE L2 -7 3265 3116 298 244 0 61 chr11 20114943 20115025 -128668447 + L2 LINE L2 3196 3272 0 2060 126 17 0 chr11 20115642 20115943 -128667529 + AluSx SINE Alu 1 306 -6 643 276 60 0 chr11 20116762 20116947 -128666525 + MIR SINE MIR 63 258 -4 372 307 100 51 chr11 20117354 20117835 -128665637 + L2 LINE L2 2762 3267 -5 245 353 43 0 chr11 20118400 20118539 -128664933 + MER117 DNA MER1_type 2 146 -51 1138 187 34 5 chr11 20119020 20119229 -128664243 - MER58C DNA MER1_type 0 215 1 249 339 227 4 chr11 20119238 20119498 -128663974 - L2 LINE L2 -12 3260 2943 402 339 54 6 chr11 20119800 20119968 -128663504 + MIR SINE MIR 46 221 -41 866 270 26 17 chr11 20120660 20120893 -128662579 - MIR SINE MIR -14 248 14 446 278 16 0 chr11 20122266 20122392 -128661080 + MIR SINE MIR 113 240 -22 504 319 96 93 chr11 20122645 20122990 -128660482 + L2 LINE L2 2924 3269 -3 497 209 113 0 chr11 20123261 20123376 -128660096 - MIR SINE MIR -10 252 125 488 276 143 33 chr11 20123636 20123846 -128659626 + MIR SINE MIR 20 252 -10 466 169 12 0 chr11 20124844 20124927 -128658545 - MIR SINE MIR -58 150 67 316 389 0 0 chr11 20124918 20125044 -128658428 - MIR3 SINE MIR -1 207 82 * 1450 154 14 0 chr11 20125093 20125314 -128658158 + MER58A DNA MER1_type 1 224 0 658 312 86 33 chr11 20125592 20125802 -128657670 - MIR SINE MIR -28 234 17 203 256 78 101 chr11 20125881 20126010 -128657462 - L2 LINE L2 -9 3263 3138 2141 114 0 0 chr11 20126533 20126830 -128656642 + AluSx SINE Alu 1 297 -15 547 300 47 97 chr11 20126954 20127274 -128656198 + L2 LINE L2 2963 3266 -6 849 239 84 5 chr11 20127944 20128173 -128655299 + MIR SINE MIR 16 261 -1 859 205 95 24 chr11 20128340 20128550 -128654922 - MIR SINE MIR -3 259 35 347 320 140 11 chr11 20128642 20128820 -128654652 - MIR SINE MIR -15 247 47 338 248 215 0 chr11 20129654 20129775 -128653697 - MIR SINE MIR -24 238 92 515 293 47 14 chr11 20129814 20129889 -128653583 - MIR SINE MIR -31 231 160 2368 126 78 8 chr11 20129889 20130287 -128653185 - MSTB LTR MaLR 0 426 1 515 293 47 14 chr11 20130287 20130425 -128653047 - MIR SINE MIR -102 160 5 210 260 0 106 chr11 20130447 20130551 -128652921 + MIR3 SINE MIR 113 205 -3 187 200 0 91 chr11 20131087 20131142 -128652330 + MIR SINE MIR 63 112 -150 28 0 0 0 chr11 20131244 20131272 -128652200 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 20131360 20131382 -128652090 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr11 20131699 20131727 -128651745 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 20131818 20131839 -128651633 + AT_rich Low_complexity Low_complexity 1 21 0 291 238 30 40 chr11 20131932 20132033 -128651439 + MIR SINE MIR 106 205 -57 268 246 0 31 chr11 20132724 20132789 -128650683 + L2 LINE L2 3198 3260 -12 275 340 50 28 chr11 20133516 20133657 -128649815 + MIR3 SINE MIR 43 186 -22 298 315 63 9 chr11 20133749 20133860 -128649612 + L2 LINE L2 2698 2814 -500 329 259 93 58 chr11 20134533 20134672 -128648800 + MIR3 SINE MIR 20 163 -45 * 858 256 94 13 chr11 20134670 20134904 -128648568 - MIR SINE MIR -1 261 9 623 196 165 0 chr11 20135214 20135372 -128648100 - L1ME3A LINE L1 -2 6168 5985 297 230 0 0 chr11 20135569 20135643 -128647829 + (TG)n Simple_repeat Simple_repeat 1 74 0 552 195 24 32 chr11 20136662 20136785 -128646687 - MER94 DNA DNA -11 123 2 490 323 101 5 chr11 20137357 20137555 -128645917 + MIR SINE MIR 46 262 0 346 269 27 81 chr11 20137603 20137752 -128645720 - MIR3 SINE MIR -32 176 36 189 180 0 0 chr11 20138002 20138052 -128645420 + (TG)n Simple_repeat Simple_repeat 2 51 0 472 237 128 26 chr11 20138379 20138535 -128644937 + MIR SINE MIR 21 192 -70 1025 231 25 33 chr11 20139348 20139590 -128643882 - MIR SINE MIR -21 241 2 380 236 91 18 chr11 20139596 20139706 -128643766 - MIR SINE MIR -74 188 71 291 335 78 22 chr11 20139956 20140135 -128643337 + L2 LINE L2 3125 3313 0 460 255 92 44 chr11 20140184 20140368 -128643104 - MIR SINE MIR -51 157 8 253 275 22 55 chr11 20141605 20141696 -128641776 + L2 LINE L2 3168 3255 -17 1622 165 4 0 chr11 20141714 20142027 -128641445 + AluJb SINE Alu 18 331 0 349 264 79 36 chr11 20142124 20142264 -128641208 - L1ME4a LINE L1 -41 6080 5935 36 23 0 0 chr11 20142306 20142349 -128641123 + AT_rich Low_complexity Low_complexity 1 43 0 498 237 50 29 chr11 20142996 20143135 -128640337 - MER5B DNA MER1_type -33 145 4 200 300 175 0 chr11 20143423 20143543 -128639929 + MIR SINE MIR 68 208 -54 713 286 26 30 chr11 20143635 20143866 -128639606 + MIR SINE MIR 32 261 -1 2485 46 3 0 chr11 20143931 20144238 -128639234 + AluY SINE Alu 1 308 -3 306 0 0 0 chr11 20144289 20144323 -128639149 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 6888 122 65 20 chr11 20145970 20147146 -128636326 - Tigger3b DNA MER2_type 0 1231 2 237 65 0 0 chr11 20148100 20148131 -128635341 + (A)n Simple_repeat Simple_repeat 1 31 0 2368 68 0 16 chr11 20148461 20148770 -128634702 + AluY SINE Alu 1 304 -7 407 108 0 34 chr11 20148789 20149011 -128634461 + AluSp SINE Alu 37 301 -12 318 283 50 17 chr11 20149314 20149434 -128634038 - MER117 DNA MER1_type 0 197 74 558 250 160 0 chr11 20149470 20149626 -128633846 + MER5A DNA MER1_type 3 183 -6 889 156 102 12 chr11 20149673 20149840 -128633632 - MER5A DNA MER1_type -7 182 1 1496 186 39 24 chr11 20150445 20150783 -128632689 - MLT1A1 LTR MaLR -2 363 21 365 238 27 103 chr11 20150942 20151127 -128632345 - MIR SINE MIR 0 262 92 23 33 0 0 chr11 20151811 20151841 -128631631 + GC_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr11 20151979 20152002 -128631470 + GC_rich Low_complexity Low_complexity 1 23 0 26 88 0 0 chr11 20152085 20152153 -128631319 + GC_rich Low_complexity Low_complexity 1 68 0 201 250 0 0 chr11 20152374 20152418 -128631054 + CT-rich Low_complexity Low_complexity 3 46 0 23 0 0 0 chr11 20152977 20153000 -128630472 + GC_rich Low_complexity Low_complexity 1 23 0 186 43 0 0 chr11 20153806 20153829 -128629643 + (TGGGGG)n Simple_repeat Simple_repeat 5 27 0 529 286 126 39 chr11 20155447 20155678 -128627794 + MIR SINE MIR 9 259 -3 718 244 97 8 chr11 20155994 20156232 -128627240 - MIR SINE MIR 0 262 4 281 204 0 0 chr11 20156257 20156306 -128627166 - tRNA-Thr-ACA tRNA tRNA -20 56 8 199 340 68 0 chr11 20156308 20156411 -128627061 - MIR SINE MIR -140 122 13 23 54 0 0 chr11 20157535 20157572 -128625900 + AT_rich Low_complexity Low_complexity 1 37 0 305 283 11 0 chr11 20157988 20158080 -128625392 + (TA)n Simple_repeat Simple_repeat 2 94 0 275 305 66 26 chr11 20158414 20158565 -128624907 - MIR SINE MIR -10 252 96 399 333 47 18 chr11 20158620 20158791 -128624681 + MIR SINE MIR 87 262 0 351 259 27 27 chr11 20159865 20159977 -128623495 - MIR SINE MIR 0 262 151 406 287 32 55 chr11 20160004 20160173 -128623299 + MIR SINE MIR 33 197 -55 269 319 35 26 chr11 20160222 20160335 -128623137 - MIR SINE MIR -131 131 18 1124 231 101 53 chr11 20160683 20161206 -128622266 + L1MC4 LINE L1 7494 8041 -1 32 43 0 0 chr11 20161493 20161539 -128621933 + AT_rich Low_complexity Low_complexity 1 46 0 398 322 148 30 chr11 20161649 20161879 -128621593 + L2 LINE L2 3015 3271 -1 379 223 52 128 chr11 20162439 20162650 -128620822 - MIR SINE MIR -55 207 13 524 313 12 0 chr11 20163268 20163431 -128620041 - MIR3 SINE MIR -6 202 38 877 147 33 0 chr11 20163563 20163713 -128619759 - FRAM SINE Alu -21 155 1 379 237 237 11 chr11 20163842 20164013 -128619459 - MIR SINE MIR -47 215 8 243 276 17 0 chr11 20164090 20164148 -128619324 + L2 LINE L2 3246 3304 -9 804 255 43 38 chr11 20164273 20164508 -128618964 - MIR SINE MIR -13 249 14 238 211 0 18 chr11 20164581 20164638 -128618834 - MIR SINE MIR -137 125 70 563 197 39 16 chr11 20165632 20165759 -128617713 + L2 LINE L2 2925 3054 -259 516 245 185 26 chr11 20165898 20166049 -128617423 + MER5A DNA MER1_type 12 186 -3 180 323 31 42 chr11 20167401 20167497 -128615975 + MIR3 SINE MIR 3 97 -111 267 281 101 0 chr11 20167562 20167651 -128615821 - MER5B DNA MER1_type -73 105 8 557 310 67 17 chr11 20167683 20167922 -128615550 + MIR SINE MIR 2 252 -10 570 319 11 21 chr11 20168172 20168363 -128615109 - MER5A DNA MER1_type 0 189 1 516 245 117 36 chr11 20169115 20169311 -128614161 - MIR SINE MIR -16 246 35 656 146 0 173 chr11 20170066 20170292 -128613180 - MER53 DNA DNA -2 187 1 463 303 42 35 chr11 20170581 20170723 -128612749 - L2 LINE L2 -19 3253 3111 303 291 33 93 chr11 20170843 20171025 -128612447 + MIR SINE MIR 34 204 -58 662 221 126 63 chr11 20171183 20171207 -128612265 + MIR SINE MIR 8 29 -233 1853 93 0 37 chr11 20171207 20171476 -128611996 + AluSx SINE Alu 40 298 -14 662 221 126 63 chr11 20171476 20171673 -128611799 + MIR SINE MIR 29 243 -19 289 255 162 6 chr11 20171710 20171831 -128611641 - MIR SINE MIR -72 136 42 474 320 73 23 chr11 20172411 20172630 -128610842 - MIR SINE MIR -19 243 14 231 215 62 0 chr11 20173015 20173080 -128610392 + (ATGGTG)n Simple_repeat Simple_repeat 3 71 0 708 247 6 6 chr11 20173080 20173238 -128610234 - MIR SINE MIR -2 260 103 636 290 107 13 chr11 20174123 20174347 -128609125 + MIR SINE MIR 7 251 -11 458 269 157 56 chr11 20174644 20174841 -128608631 - MIR SINE MIR -6 256 40 264 279 35 35 chr11 20175838 20175924 -128607548 - MIR SINE MIR -149 113 28 361 303 99 25 chr11 20176504 20176666 -128606806 - L2 LINE L2 -22 3250 3077 536 313 35 23 chr11 20176728 20176984 -128606488 + MIR SINE MIR 4 262 0 1312 158 0 5 chr11 20178183 20178398 -128605074 + AluJb SINE Alu 84 297 -15 493 253 147 11 chr11 20178464 20178654 -128604818 - MIR SINE MIR -12 250 35 261 301 11 11 chr11 20178831 20178924 -128604548 + MER102a DNA MER1_type 237 329 -1 189 293 73 24 chr11 20179392 20179474 -128603998 - L2 LINE L2 -255 3017 2932 2363 50 3 7 chr11 20179481 20179781 -128603691 + SVA Other Other 1088 1386 0 721 245 35 49 chr11 20179904 20180158 -128603314 - MIR SINE MIR 0 262 16 4382 138 22 106 chr11 20180351 20181335 -128602137 - L1MA9 LINE L1 -37 6275 5374 1032 219 26 22 chr11 20181390 20181618 -128601854 + MIR SINE MIR 20 248 -14 249 293 129 10 chr11 20182234 20182401 -128601071 + MIR3 SINE MIR 5 149 -59 552 273 127 10 chr11 20183200 20183405 -128600067 - MIR SINE MIR -14 248 20 326 284 90 40 chr11 20184072 20184273 -128599199 - L1MC/D LINE L1 -2044 5764 5554 624 178 178 6 chr11 20184487 20184650 -128598822 + ORSL DNA AcHobo 84 274 -1 2336 123 9 6 chr11 20184785 20185119 -128598353 - MER1B DNA MER1_type -2 335 1 327 211 11 74 chr11 20185229 20185324 -128598148 - MIR SINE MIR -111 151 63 3478 43 0 2 chr11 20186096 20186513 -128596959 - L1PA4 LINE L1 -3 6152 5737 390 243 112 33 chr11 20186513 20186665 -128596807 - MIR SINE MIR -19 243 80 181 297 47 0 chr11 20187445 20187509 -128595963 - MIR SINE MIR -96 166 100 259 282 224 0 chr11 20187635 20187720 -128595752 + MIR SINE MIR 48 151 -111 465 304 35 0 chr11 20187725 20187840 -128595632 + L2 LINE L2 3154 3272 0 198 279 101 38 chr11 20187845 20187924 -128595548 + MIR SINE MIR 172 255 -7 362 301 49 24 chr11 20188088 20188211 -128595261 - MIR3 SINE MIR -76 132 7 394 320 75 0 chr11 20189816 20189963 -128593509 - MIR3 SINE MIR -9 199 42 820 261 66 33 chr11 20190050 20190171 -128593301 - MIR SINE MIR -12 250 134 959 191 48 52 chr11 20190171 20190381 -128593091 - MER63A DNA MER1_type 0 210 2 820 261 66 33 chr11 20190381 20190500 -128592972 - MIR SINE MIR -128 134 2 812 291 169 0 chr11 20190679 20191023 -128592449 + L2 LINE L2 2863 3264 -49 299 218 23 23 chr11 20191663 20191750 -128591722 - L1ME4a LINE L1 -71 6050 5964 474 288 66 20 chr11 20191765 20191963 -128591509 - L1ME4a LINE L1 -212 5909 5703 1688 197 41 19 chr11 20192041 20192407 -128591065 + MLT1A2 LTR MaLR 1 374 0 276 182 0 0 chr11 20192469 20192524 -128590948 + L2 LINE L2 2920 2974 -298 230 146 0 0 chr11 20192581 20192622 -128590850 + HsTC2 DNA Tc2 26 66 -1832 224 296 63 101 chr11 20192723 20192882 -128590590 + L2 LINE L2 3068 3220 -52 195 269 203 11 chr11 20193547 20193729 -128589743 - L2 LINE L2 -189 3083 2867 356 260 127 27 chr11 20194379 20194529 -128588943 - MIR SINE MIR -57 205 41 1530 204 19 22 chr11 20194622 20194935 -128588537 - MLT1C LTR MaLR 0 467 156 2010 156 26 164 chr11 20194953 20195484 -128587988 - LTR32 LTR ERVL 0 471 14 524 194 97 8 chr11 20195483 20195607 -128587865 - MLT1C LTR MaLR -327 140 6 * 264 59 0 0 chr11 20196196 20196230 -128587242 + (GGCTG)n Simple_repeat Simple_repeat 1 34 0 409 225 0 34 chr11 20196684 20196773 -128586699 + MIR SINE MIR 65 150 -112 813 260 53 13 chr11 20196894 20197145 -128586327 - MIR SINE MIR 0 262 13 218 238 131 24 chr11 20197252 20197336 -128586136 - MIR SINE MIR -64 198 106 418 273 234 22 chr11 20197348 20197703 -128585769 - L2 LINE L2 -20 3293 2864 2122 69 55 3 chr11 20198292 20198583 -128584889 - AluY SINE Alu -4 307 2 199 257 43 29 chr11 20198586 20198656 -128584816 - MIR3 SINE MIR -24 184 114 651 295 33 33 chr11 20198799 20199040 -128584432 + MIR SINE MIR 22 262 0 899 287 124 27 chr11 20200406 20200810 -128582662 - L2 LINE L2 0 3313 2871 593 328 110 58 chr11 20200961 20201162 -128582310 + L2 LINE L2 2469 2658 -655 2010 125 0 3 chr11 20201162 20201466 -128582006 + AluSx SINE Alu 1 303 -9 593 328 110 58 chr11 20201466 20201811 -128581661 + L2 LINE L2 2658 2983 -330 2231 116 0 0 chr11 20201811 20202114 -128581358 - AluSc SINE Alu -6 303 1 593 328 110 58 chr11 20202114 20202364 -128581108 + L2 LINE L2 2983 3312 -1 222 136 0 0 chr11 20202978 20203022 -128580450 + (T)n Simple_repeat Simple_repeat 1 44 0 216 200 11 89 chr11 20203736 20203826 -128579646 + MIR SINE MIR 123 205 -57 1059 277 80 58 chr11 20203935 20204434 -128579038 + L2 LINE L2 2302 2811 -503 308 160 0 0 chr11 20204434 20204484 -128578988 - MER58 DNA MER1_type -1 2419 2370 341 201 7 45 chr11 20204628 20204782 -128578690 + CT-rich Low_complexity Low_complexity 1 148 0 433 232 9 64 chr11 20204787 20204913 -128578559 - MER58 DNA MER1_type -115 100 1 788 287 86 41 chr11 20204915 20205403 -128578069 + L2 LINE L2 2804 3313 0 31 0 0 0 chr11 20205423 20205454 -128578018 + AT_rich Low_complexity Low_complexity 1 31 0 344 277 118 56 chr11 20206644 20206825 -128576647 + MIR SINE MIR 24 212 -50 658 342 30 0 chr11 20206899 20207130 -128576342 - MIR SINE MIR -3 259 22 379 301 139 5 chr11 20207738 20207947 -128575525 + L3 LINE CR1 1083 1319 -258 542 313 57 9 chr11 20207988 20208199 -128575273 + MIR SINE MIR 9 229 -33 331 355 16 16 chr11 20208254 20208378 -128575094 + MIR SINE MIR 22 145 -63 28 29 0 0 chr11 20209553 20209588 -128573884 + AT_rich Low_complexity Low_complexity 1 35 0 301 223 43 53 chr11 20210339 20210433 -128573039 + MIR3 SINE MIR 111 203 -5 181 372 77 0 chr11 20210446 20210524 -128572948 - L2 LINE L2 -40 3232 3149 239 325 7 22 chr11 20210701 20210834 -128572638 - L2 LINE L2 -248 3024 2896 180 0 0 0 chr11 20211122 20211142 -128572330 + (TTCA)n Simple_repeat Simple_repeat 2 21 0 214 311 168 31 chr11 20212276 20212437 -128571035 - MIR3 SINE MIR -15 193 11 193 371 57 17 chr11 20213090 20213265 -128570207 + L2 LINE L2 2558 2739 -575 236 329 0 0 chr11 20213345 20213430 -128570042 + L2 LINE L2 2904 2988 -284 1669 167 4 4 chr11 20213518 20213793 -128569679 - AluJo SINE Alu -37 275 1 23 0 0 0 chr11 20214498 20214521 -128568951 + AT_rich Low_complexity Low_complexity 1 23 0 838 274 160 30 chr11 20214788 20215323 -128568149 - L2 LINE L2 -5 3308 2692 472 111 20 0 chr11 20215894 20215993 -128567479 + (TG)n Simple_repeat Simple_repeat 1 101 0 24 67 0 0 chr11 20216402 20216447 -128567025 + GC_rich Low_complexity Low_complexity 1 45 0 27 49 0 0 chr11 20216601 20216642 -128566830 + GC_rich Low_complexity Low_complexity 1 41 0 313 327 140 0 chr11 20217611 20217761 -128565711 + MIR SINE MIR 92 262 0 304 40 40 0 chr11 20217810 20217860 -128565612 + (CAAAAA)n Simple_repeat Simple_repeat 1 52 0 194 188 0 0 chr11 20218879 20218911 -128564561 + MIR SINE MIR 48 79 -183 319 271 83 36 chr11 20219825 20220073 -128563399 + MIR3 SINE MIR 1 258 -4 315 340 95 0 chr11 20220117 20220192 -128563280 + L1ME4a LINE L1 5960 6026 -95 248 0 31 0 chr11 20220192 20220224 -128563248 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 315 340 95 0 chr11 20220224 20220295 -128563177 + L1ME4a LINE L1 6026 6120 -1 629 246 120 0 chr11 20220322 20220489 -128562983 - MIR SINE MIR -2 260 74 789 139 0 0 chr11 20221093 20221222 -128562250 - L1MA9 LINE L1 -5 6307 6179 668 278 65 37 chr11 20222922 20223167 -128560305 + MIR SINE MIR 11 262 0 266 270 153 31 chr11 20223223 20223419 -128560053 - L2 LINE L2 -52 3261 3042 479 123 0 0 chr11 20223424 20223489 -128559983 + AluS SINE Alu 2 66 -247 781 237 116 5 chr11 20223704 20223911 -128559561 + MIR SINE MIR 19 248 -14 189 0 0 0 chr11 20223914 20223935 -128559537 + (CAT)n Simple_repeat Simple_repeat 3 23 0 252 333 33 25 chr11 20224195 20224315 -128559157 - MIR3 SINE MIR -7 201 81 213 305 17 0 chr11 20225399 20225458 -128558014 + L2 LINE L2 3235 3294 -19 784 177 0 109 chr11 20225879 20226071 -128557401 + FAM SINE Alu 4 174 -1 1543 164 0 77 chr11 20226122 20226446 -128557026 - AluJo SINE Alu -11 301 3 270 302 70 0 chr11 20226578 20226664 -128556808 + MIR SINE MIR 84 175 -87 833 310 162 29 chr11 20227062 20227151 -128556321 + L2 LINE L2 2323 2399 -873 1018 195 37 19 chr11 20227151 20227366 -128556106 - MER20 DNA MER1_type 0 219 1 833 310 162 29 chr11 20227366 20228117 -128555355 + L2 LINE L2 2399 3272 0 243 294 0 47 chr11 20228231 20228316 -128555156 + L2 LINE L2 3233 3313 0 235 263 0 18 chr11 20228531 20228588 -128554884 + L2 LINE L2 3216 3271 -1 432 248 33 33 chr11 20229279 20229400 -128554072 - MIR3 SINE MIR -3 205 85 203 262 0 33 chr11 20229525 20229586 -128553886 + MIR SINE MIR 204 262 0 409 288 135 6 chr11 20229592 20229755 -128553717 + MIR SINE MIR 67 250 -12 911 246 43 17 chr11 20229954 20230208 -128553264 - MIR SINE MIR -10 252 1 2247 103 7 0 chr11 20231959 20232269 -128551203 + AluSx SINE Alu 1 312 0 604 305 124 33 chr11 20232553 20233216 -128550256 + L2 LINE L2 2551 3313 0 210 398 11 0 chr11 20234040 20234128 -128549344 - MIR SINE MIR -90 172 84 543 250 69 5 chr11 20234343 20234547 -128548925 + MER113 DNA MER1_type? 1 217 -304 248 215 28 93 chr11 20235152 20235259 -128548213 - LTR33A LTR ERVL -20 503 404 324 293 162 59 chr11 20235458 20235680 -128547792 - MIR SINE MIR -14 248 4 418 276 77 46 chr11 20236705 20236901 -128546571 + MIR SINE MIR 7 208 -54 308 289 206 39 chr11 20237692 20237872 -128545600 - MIR SINE MIR -33 229 20 405 167 0 0 chr11 20239705 20239783 -128543689 + (TG)n Simple_repeat Simple_repeat 2 79 0 858 262 34 9 chr11 20240715 20240948 -128542524 + MIR SINE MIR 9 247 -15 455 309 216 24 chr11 20241011 20241386 -128542086 + L3 LINE CR1 1128 1574 -3 805 126 0 0 chr11 20241644 20241763 -128541709 + FRAM SINE Alu 49 167 -9 425 222 51 8 chr11 20242528 20242645 -128540827 + MIR SINE MIR 84 205 -57 210 118 0 0 chr11 20243677 20243711 -128539761 + (TCCA)n Simple_repeat Simple_repeat 3 36 0 246 264 94 0 chr11 20243937 20244043 -128539429 - L2 LINE L2 -324 2948 2833 385 281 22 30 chr11 20244815 20244950 -128538522 - MIR SINE MIR -78 184 51 318 356 53 0 chr11 20245550 20245682 -128537790 + MIR SINE MIR 9 147 -115 342 263 39 38 chr11 20245937 20246094 -128537378 + MER5A DNA MER1_type 12 182 -7 395 248 206 7 chr11 20247072 20247213 -128536259 + MIR SINE MIR 77 245 -17 22 35 0 0 chr11 20247554 20247583 -128535889 + AT_rich Low_complexity Low_complexity 1 29 0 214 250 0 0 chr11 20248408 20248452 -128535020 + MER5B DNA MER1_type 5 48 -130 5336 160 90 52 chr11 20248464 20249742 -128533730 - L1MC3 LINE L1 0 7785 6460 318 267 124 29 chr11 20249976 20250081 -128533391 + L2 LINE L2 3155 3269 -3 368 238 0 12 chr11 20250874 20250954 -128532518 - L2 LINE L2 -12 3301 3223 287 250 16 0 chr11 20251001 20251065 -128532407 - MER5A DNA MER1_type -1 188 124 663 169 0 66 chr11 20251159 20251295 -128532177 - MER5A DNA MER1_type -54 135 9 460 288 122 56 chr11 20251286 20251606 -128531866 + L2 LINE L2 2972 3312 -1 * 761 181 0 8 chr11 20253665 20253798 -128529674 - FLAM_A SINE Alu 0 133 2 186 306 134 59 chr11 20254710 20254896 -128528576 + MIR SINE MIR 42 241 -21 405 250 40 32 chr11 20255533 20255657 -128527815 - MIR SINE MIR -44 218 94 279 0 0 0 chr11 20257266 20257297 -128526175 + (T)n Simple_repeat Simple_repeat 1 31 0 1766 197 82 8 chr11 20257325 20257715 -128525757 + MER63B DNA MER1_type 18 436 0 352 345 23 0 chr11 20257938 20258112 -128525360 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 272 285 80 15 chr11 20258323 20258460 -128525012 - L2 LINE L2 -216 3056 2911 382 248 118 19 chr11 20258712 20258873 -128524599 - MIR SINE MIR -6 256 80 303 262 71 0 chr11 20259676 20259760 -128523712 + MIR SINE MIR 64 153 -109 294 281 0 0 chr11 20259756 20259820 -128523652 - L2 LINE L2 -2 3311 3248 * 2552 46 0 0 chr11 20260015 20260317 -128523155 + AluY SINE Alu 1 302 -9 504 261 119 17 chr11 20260956 20261132 -128522340 + MIR SINE MIR 35 228 -34 378 266 184 37 chr11 20261151 20261369 -128522103 - MIR SINE MIR 0 262 13 1779 149 10 3 chr11 20262092 20262246 -128521226 - AluJb SINE Alu -22 290 132 2002 132 0 0 chr11 20262246 20262542 -128520930 - AluSq SINE Alu -17 296 1 1779 149 10 3 chr11 20262542 20262675 -128520797 - AluJb SINE Alu -180 132 1 1242 77 48 0 chr11 20262791 20262959 -128520513 + L1PA7 LINE L1 5979 6154 0 469 268 147 21 chr11 20263132 20263322 -128520150 - MIR SINE MIR -2 260 47 210 274 69 49 chr11 20263533 20263635 -128519837 + MIR SINE MIR 80 183 -79 2249 106 3 0 chr11 20264045 20264356 -128519116 + AluSx SINE Alu 1 312 0 5845 57 22 46 chr11 20265750 20267026 -128516446 - SVA Other Other -520 866 5 234 0 0 0 chr11 20267055 20267081 -128516391 + (GGGAGA)n Simple_repeat Simple_repeat 2 27 0 404 317 124 16 chr11 20267438 20267624 -128515848 - MIR SINE MIR -34 228 23 219 330 90 50 chr11 20269256 20269456 -128514016 + L2 LINE L2 2837 3044 -228 * 443 219 26 35 chr11 20269441 20269555 -128513917 - L2 LINE L2 0 3313 3201 551 288 15 8 chr11 20269732 20269864 -128513608 + L2 LINE L2 3140 3272 0 257 248 46 46 chr11 20271911 20272020 -128511452 + MIR SINE MIR 31 139 -69 180 244 22 0 chr11 20272062 20272107 -128511365 + L2 LINE L2 3227 3272 0 981 182 22 11 chr11 20272128 20272309 -128511163 - MER20 DNA MER1_type 0 219 37 28 0 0 0 chr11 20272935 20272963 -128510509 + AT_rich Low_complexity Low_complexity 1 28 0 201 221 70 58 chr11 20273283 20273369 -128510103 + MIR SINE MIR 48 134 -74 491 326 72 23 chr11 20276584 20276805 -128506667 - MIR SINE MIR -6 256 25 677 250 0 7 chr11 20278172 20278320 -128505152 - MIR SINE MIR -13 249 103 470 330 95 25 chr11 20279090 20279405 -128504067 - L2 LINE L2 0 3272 2936 234 239 188 26 chr11 20280285 20280402 -128503070 + MIR3 SINE MIR 6 141 -67 1294 182 182 36 chr11 20280699 20280828 -128502644 + L1MB7 LINE L1 5744 5853 -331 1993 142 0 0 chr11 20280828 20281123 -128502349 + AluSx SINE Alu 1 295 -17 1294 182 182 36 chr11 20281123 20281144 -128502328 + L1MB7 LINE L1 5853 5870 -314 2417 124 34 0 chr11 20281144 20281498 -128501974 - MER47A DNA MER2_type 0 366 1 1294 182 182 36 chr11 20281498 20281730 -128501742 + L1MB7 LINE L1 5870 6183 -1 1971 103 0 11 chr11 20281967 20282279 -128501193 - AluSc SINE Alu 0 309 1 385 293 36 48 chr11 20282291 20282458 -128501014 - MIR SINE MIR -66 196 32 186 43 0 0 chr11 20282837 20282860 -128500612 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 207 206 16 0 chr11 20282874 20282937 -128500535 + (TA)n Simple_repeat Simple_repeat 1 64 0 25 0 0 0 chr11 20282965 20282990 -128500482 + AT_rich Low_complexity Low_complexity 1 25 0 672 273 150 0 chr11 20283019 20283239 -128500233 + MIR SINE MIR 10 262 0 2494 56 0 0 chr11 20283421 20283725 -128499747 - AluY SINE Alu -7 304 1 401 278 90 14 chr11 20283730 20283874 -128499598 + MIR3 SINE MIR 47 201 -7 318 257 29 73 chr11 20284067 20284203 -128499269 - MER94 DNA DNA -4 130 1 427 290 126 67 chr11 20284279 20284517 -128498955 - MIR SINE MIR -1 261 10 180 97 0 0 chr11 20285882 20285913 -128497559 + (CAG)n Simple_repeat Simple_repeat 2 32 0 485 308 156 12 chr11 20287554 20287804 -128495668 - L2 LINE L2 0 3313 3028 837 361 58 5 chr11 20287996 20288392 -128495080 - L2 LINE L2 -523 2791 2375 225 0 0 0 chr11 20290735 20290760 -128492712 + (TTG)n Simple_repeat Simple_repeat 2 26 0 653 251 126 13 chr11 20291061 20291292 -128492180 - MIR SINE MIR -3 259 3 323 119 0 68 chr11 20291856 20291915 -128491557 - AluJo SINE Alu -4 298 244 1202 174 58 0 chr11 20292002 20292226 -128491246 - AluJo SINE Alu -69 243 7 469 274 125 6 chr11 20293336 20293504 -128489968 + MIR SINE MIR 8 195 -67 26 0 0 0 chr11 20293511 20293537 -128489935 + AT_rich Low_complexity Low_complexity 1 26 0 214 279 116 17 chr11 20294579 20294751 -128488721 + L2 LINE L2 2773 2961 -353 205 299 0 0 chr11 20296120 20296187 -128487285 - MIR SINE MIR -109 153 87 180 0 0 0 chr11 20297912 20297932 -128485540 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1288 152 0 0 chr11 20297935 20298119 -128485353 - AluSg/x SINE Alu -34 278 95 207 254 17 17 chr11 20299752 20299811 -128483661 + CT-rich Low_complexity Low_complexity 3 61 0 243 170 0 0 chr11 20299969 20300016 -128483456 + (TATATG)n Simple_repeat Simple_repeat 5 51 0 414 250 38 23 chr11 20300079 20300211 -128483261 - MIR SINE MIR -104 158 25 2364 78 3 0 chr11 20300690 20300984 -128482488 - AluSq SINE Alu -18 295 1 1450 130 160 37 chr11 20301023 20301331 -128482141 - AluSx SINE Alu 0 341 1 303 288 120 0 chr11 20301350 20301475 -128481997 - MIR SINE MIR -76 186 47 1338 169 46 11 chr11 20302130 20302391 -128481081 - L1MB2 LINE L1 -11 6160 5891 363 126 0 13 chr11 20302526 20302593 -128480879 - L1MB3 LINE L1 -296 5887 5825 5304 23 5 2 chr11 20302737 20303347 -128480125 + L1PA4 LINE L1 5543 6154 -1 22 0 0 0 chr11 20303838 20303860 -128479612 + AT_rich Low_complexity Low_complexity 1 22 0 759 238 117 92 chr11 20304181 20304769 -128478703 - L1MC4a LINE L1 -27 6094 5492 287 323 132 34 chr11 20305469 20305704 -128477768 - L2 LINE L2 0 3272 3015 209 329 13 0 chr11 20306313 20306389 -128477083 + MIR SINE MIR 24 100 -162 240 357 83 24 chr11 20307004 20307172 -128476300 + MER5A DNA MER1_type 8 185 -4 1968 136 0 0 chr11 20307220 20307492 -128475980 + AluSx SINE Alu 2 273 -39 250 278 44 22 chr11 20307534 20307624 -128475848 + MIR SINE MIR 159 250 -12 516 283 67 6 chr11 20310202 20310382 -128473090 - L2 LINE L2 -18 3295 3105 648 278 22 40 chr11 20310650 20310877 -128472595 + L3 LINE CR1 1342 1564 -13 1477 243 73 10 chr11 20312027 20312422 -128471050 - MLT1H LTR MaLR -129 420 1 433 341 12 0 chr11 20312899 20313063 -128470409 + MIR SINE MIR 27 192 -70 948 165 60 15 chr11 20314442 20314642 -128468830 + MER3 DNA MER1_type 1 209 0 1368 137 68 45 chr11 20314711 20315003 -128468469 + L1MB7 LINE L1 5886 6184 0 457 294 64 43 chr11 20315976 20316211 -128467261 - MIR SINE MIR -17 245 6 213 333 0 13 chr11 20316239 20316314 -128467158 - L2 LINE L2 -18 3295 3222 2151 112 7 10 chr11 20316532 20316836 -128466636 + AluSx SINE Alu 1 303 -9 261 328 134 18 chr11 20317205 20317376 -128466096 - L2 LINE L2 -185 3087 2897 210 277 0 0 chr11 20317455 20317502 -128465970 + L2 LINE L2 3150 3196 -76 184 304 14 14 chr11 20317533 20317602 -128465870 - MIR3 SINE MIR -134 74 6 284 238 114 19 chr11 20319599 20319704 -128463768 + MIR SINE MIR 17 131 -77 733 262 30 35 chr11 20319942 20320144 -128463328 - MER63A DNA MER1_type 0 210 10 2893 7 0 0 chr11 20320493 20320799 -128462673 - AluYb8 SINE Alu -12 306 1 204 200 0 0 chr11 20320912 20320957 -128462515 + CT-rich Low_complexity Low_complexity 3 47 0 431 319 57 60 chr11 20321487 20321822 -128461650 + L2 LINE L2 2931 3264 -8 785 230 133 0 chr11 20321861 20322087 -128461385 + MIR SINE MIR 5 260 -2 552 245 15 2 chr11 20322627 20322811 -128460661 - MER58A DNA MER1_type 0 224 5 2172 97 10 17 chr11 20323573 20323872 -128459600 - AluSx SINE Alu -15 297 1 345 283 9 0 chr11 20323940 20324046 -128459426 + MIR SINE MIR 47 153 -109 204 273 0 0 chr11 20324924 20324968 -128458504 + L2 LINE L2 3232 3275 -38 2047 136 3 3 chr11 20325807 20326101 -128457371 + AluJb SINE Alu 1 294 -18 394 257 63 48 chr11 20326117 20326251 -128457221 + MIR SINE MIR 52 192 -70 2106 110 3 3 chr11 20326251 20326542 -128456930 - AluSg SINE Alu -19 291 1 394 257 63 48 chr11 20326542 20326613 -128456859 + MIR SINE MIR 192 260 -2 609 236 28 11 chr11 20327671 20327849 -128455623 + MIR SINE MIR 81 261 -1 418 288 7 29 chr11 20328446 20328585 -128454887 - MER5A DNA MER1_type -3 186 51 335 341 18 6 chr11 20328582 20328749 -128454723 + MIR3 SINE MIR 40 208 0 * 339 387 0 0 chr11 20328745 20328887 -128454585 - L3 LINE CR1 -506 1071 930 501 231 18 47 chr11 20329238 20329407 -128454065 - MER103 DNA DNA 0 166 3 201 39 0 0 chr11 20330251 20330277 -128453195 + (A)n Simple_repeat Simple_repeat 1 26 0 3324 203 43 17 chr11 20330917 20331424 -128452048 - L1M4 LINE L1 -690 5484 4954 2348 107 3 0 chr11 20331424 20331723 -128451749 + AluSg SINE Alu 1 300 -10 3324 203 43 17 chr11 20331723 20332106 -128451366 - L1M4 LINE L1 -1220 4954 4583 180 77 0 0 chr11 20332593 20332619 -128450853 + (A)n Simple_repeat Simple_repeat 1 26 0 2092 106 58 0 chr11 20333255 20333547 -128449925 + AluSq SINE Alu 1 309 -4 411 133 0 0 chr11 20333581 20333641 -128449831 + AluS SINE Alu 220 279 -31 266 0 29 0 chr11 20333644 20333678 -128449794 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 307 210 156 70 chr11 20333681 20333867 -128449605 - MER112 DNA MER1_type -57 203 2 284 243 63 18 chr11 20334093 20334204 -128449268 + MER113 DNA MER1_type? 1 116 -405 290 323 65 0 chr11 20334686 20334810 -128448662 - MIR3 SINE MIR -13 195 64 1707 141 53 47 chr11 20334928 20335227 -128448245 + AluSx SINE Alu 1 301 -11 213 302 63 107 chr11 20335858 20336063 -128447409 + L2 LINE L2 3027 3222 -50 529 236 52 35 chr11 20336469 20336643 -128446829 + L2 LINE L2 3118 3294 -19 329 257 37 37 chr11 20336965 20337074 -128446398 + MIR SINE MIR 39 147 -61 321 89 0 0 chr11 20338192 20338237 -128445235 + (A)n Simple_repeat Simple_repeat 1 45 0 2099 113 58 0 chr11 20338283 20338574 -128444898 - AluSx SINE Alu -4 308 1 219 222 0 48 chr11 20339646 20339709 -128443763 + GA-rich Low_complexity Low_complexity 4 63 0 24 0 0 0 chr11 20340623 20340647 -128442825 + AT_rich Low_complexity Low_complexity 1 24 0 2066 130 0 34 chr11 20341802 20342125 -128441347 - AluSx SINE Alu 0 312 1 219 261 222 68 chr11 20342679 20342812 -128440660 - MIR SINE MIR -48 214 46 2134 123 7 0 chr11 20342812 20343112 -128440360 + AluSx SINE Alu 1 302 -10 219 261 222 68 chr11 20343112 20343154 -128440318 - MIR SINE MIR -216 46 12 215 180 90 130 chr11 20343165 20343265 -128440207 + MIR3 SINE MIR 98 193 -15 350 321 14 42 chr11 20343487 20343660 -128439812 - MIR SINE MIR -62 146 19 552 295 62 21 chr11 20344270 20344595 -128438877 - MER102b DNA MER1_type -2 339 2 286 244 24 24 chr11 20345859 20345941 -128437531 + CT-rich Low_complexity Low_complexity 4 85 0 28 0 0 0 chr11 20346210 20346238 -128437234 + AT_rich Low_complexity Low_complexity 1 28 0 282 288 110 21 chr11 20347650 20347841 -128435631 - L3 LINE CR1 -69 1508 1301 320 268 126 31 chr11 20348371 20348498 -128434974 - MIR SINE MIR -71 191 53 1808 155 14 7 chr11 20348661 20348951 -128434521 + AluJo SINE Alu 3 294 -18 21 36 0 0 chr11 20349791 20349819 -128433653 + AT_rich Low_complexity Low_complexity 1 28 0 2187 95 0 11 chr11 20349872 20350180 -128433292 + AluSx SINE Alu 1 305 0 641 103 5 82 chr11 20350363 20350557 -128432915 + (TTTCC)n Simple_repeat Simple_repeat 2 180 0 536 189 5 43 chr11 20350549 20350734 -128432738 + CT-rich Low_complexity Low_complexity 3 180 0 * 356 125 0 38 chr11 20350745 20350825 -128432647 + (TTTC)n Simple_repeat Simple_repeat 1 77 0 647 85 40 57 chr11 20350826 20351003 -128432469 + CT-rich Low_complexity Low_complexity 5 178 0 259 315 102 0 chr11 20351349 20351457 -128432015 - L2 LINE L2 0 3272 3154 2079 107 24 30 chr11 20353176 20353474 -128429998 - AluSc SINE Alu -13 296 1 532 305 119 40 chr11 20354490 20354962 -128428510 + L2 LINE L2 2804 3312 -1 234 315 37 9 chr11 20354982 20355090 -128428382 + MIR3 SINE MIR 93 203 -5 211 287 75 21 chr11 20355157 20355251 -128428221 + MIR3 SINE MIR 96 194 -14 22 0 0 0 chr11 20355344 20355366 -128428106 + AT_rich Low_complexity Low_complexity 1 22 0 675 251 6 12 chr11 20355376 20355547 -128427925 - MIR SINE MIR -29 233 64 3909 128 63 3 chr11 20355774 20356390 -128427082 - MER39B LTR ERV1 0 653 1 222 278 19 65 chr11 20357337 20357445 -128426027 + MIR SINE MIR 19 121 -87 207 268 146 12 chr11 20358803 20358885 -128424587 + MIR SINE MIR 20 112 -150 216 0 0 0 chr11 20358956 20358980 -128424492 + (TG)n Simple_repeat Simple_repeat 2 25 0 1383 149 0 0 chr11 20359511 20359719 -128423753 + MER2 DNA MER2_type 2 209 -136 366 222 0 0 chr11 20359926 20360016 -128423456 + (TG)n Simple_repeat Simple_repeat 2 91 0 260 89 0 0 chr11 20360016 20360061 -128423411 + LTR66 LTR ERVL 394 438 -172 323 240 16 74 chr11 20360115 20360222 -128423250 + L2 LINE L2 3197 3298 -15 1513 199 61 0 chr11 20360222 20360499 -128422973 + AluJb SINE Alu 1 294 -18 323 240 16 74 chr11 20360499 20360512 -128422960 + L2 LINE L2 3298 3310 -3 2669 238 37 66 chr11 20361304 20361455 -128422017 - MER21B LTR ERV1 -69 794 640 321 26 0 0 chr11 20361455 20361493 -128421979 + (CA)n Simple_repeat Simple_repeat 2 39 0 192 40 0 0 chr11 20361494 20361519 -128421953 + (TC)n Simple_repeat Simple_repeat 1 25 0 2669 238 37 66 chr11 20361519 20362183 -128421289 - MER21B LTR ERV1 -222 641 1 601 209 67 107 chr11 20363275 20363500 -128419972 - MER58A DNA MER1_type -8 216 1 37 0 0 0 chr11 20363723 20363760 -128419712 + AT_rich Low_complexity Low_complexity 1 37 0 978 154 24 172 chr11 20363854 20364192 -128419280 + AluJo SINE Alu 3 290 -12 1865 141 36 19 chr11 20364208 20364569 -128418903 - L1MB4 LINE L1 -10 6170 5804 1159 155 5 5 chr11 20364569 20364756 -128418716 - AluJb SINE Alu -63 249 63 387 244 126 0 chr11 20365537 20365672 -128417800 - MIR SINE MIR -2 260 109 430 294 24 0 chr11 20365821 20365947 -128417525 - MIR SINE MIR -77 185 57 2325 112 0 0 chr11 20365973 20366277 -128417195 + AluSg SINE Alu 1 304 -6 838 230 77 0 chr11 20366427 20366623 -128416849 + MIR SINE MIR 46 256 -6 276 221 0 133 chr11 20366625 20366738 -128416734 - L2 LINE L2 -19 3294 3197 255 279 0 0 chr11 20369583 20369610 -128413862 + CT-rich Low_complexity Low_complexity 1 27 -41 2704 222 42 14 chr11 20369610 20370187 -128413285 - MLT1E LTR MaLR 0 593 1 255 279 0 0 chr11 20370187 20370227 -128413245 + CT-rich Low_complexity Low_complexity 26 68 0 460 298 111 0 chr11 20370230 20370428 -128413044 - MIR SINE MIR -42 220 1 405 250 66 22 chr11 20370974 20371110 -128412362 + MER117 DNA MER1_type 46 187 -10 281 207 12 0 chr11 20371675 20371757 -128411715 + (TA)n Simple_repeat Simple_repeat 2 84 0 26 74 0 0 chr11 20371768 20371822 -128411650 + AT_rich Low_complexity Low_complexity 1 54 0 371 333 75 0 chr11 20372269 20372305 -128411167 - L3 LINE CR1 -17 1560 1528 2868 13 0 0 chr11 20372305 20372611 -128410861 + AluYb8 SINE Alu 1 306 -12 371 333 75 0 chr11 20372611 20372748 -128410724 - L3 LINE CR1 -49 1528 1374 2017 187 17 3 chr11 20372749 20373107 -128410365 - MLT1A1 LTR MaLR -2 363 1 2844 239 89 25 chr11 20373172 20374174 -128409298 + L1MC4 LINE L1 6977 8042 0 226 368 37 0 chr11 20374365 20374501 -128408971 - L2 LINE L2 -217 3055 2915 2117 139 3 0 chr11 20374651 20374952 -128408520 - AluSx SINE Alu -10 302 1 250 343 4 27 chr11 20375321 20375464 -128408008 + GA-rich Low_complexity Low_complexity 1 139 0 203 143 29 0 chr11 20375597 20375632 -128407840 + MIR SINE MIR 83 118 -90 23 0 0 0 chr11 20376172 20376195 -128407277 + AT_rich Low_complexity Low_complexity 1 23 0 515 252 0 8 chr11 20376857 20376976 -128406496 - L2 LINE L2 -5 3308 3191 706 291 42 8 chr11 20377865 20378106 -128405366 - MIR SINE MIR -7 255 7 1042 171 151 0 chr11 20380479 20380684 -128402788 - MER46A DNA MER2_type 0 236 1 202 140 0 60 chr11 20380817 20380867 -128402605 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 286 258 83 33 chr11 20381888 20382008 -128401464 - L2 LINE L2 -6 3266 3141 416 260 87 13 chr11 20383552 20383702 -128399770 + MIR SINE MIR 37 197 -65 353 260 16 55 chr11 20383744 20383871 -128399601 - MIR SINE MIR -4 258 137 304 328 8 16 chr11 20384625 20384750 -128398722 + MIR SINE MIR 136 259 -3 213 336 65 0 chr11 20384963 20385070 -128398402 + MIR SINE MIR 85 198 -64 * 454 309 105 9 chr11 20385057 20385267 -128398205 - MIR SINE MIR -2 260 31 338 259 0 36 chr11 20386833 20386945 -128396527 - MIR SINE MIR -38 224 117 915 240 9 5 chr11 20387090 20387311 -128396161 - MIR SINE MIR -38 224 3 402 216 151 14 chr11 20387467 20387606 -128395866 + MIR SINE MIR 23 180 -82 2802 138 40 33 chr11 20387777 20388257 -128395215 + MLT1D LTR MaLR 23 505 0 201 313 15 15 chr11 20388778 20388845 -128394627 + L2 LINE L2 3200 3266 -6 746 237 30 0 chr11 20389097 20389266 -128394206 - MER5A DNA MER1_type -5 184 11 1344 135 45 9 chr11 20389429 20389651 -128393821 - MER30 DNA MER1_type 0 230 1 224 271 169 25 chr11 20389844 20389962 -128393510 + L2 LINE L2 3134 3268 -4 459 165 82 135 chr11 20390511 20390681 -128392791 + MER102a DNA MER1_type 169 329 -1 404 228 61 83 chr11 20391053 20391233 -128392239 + MIR SINE MIR 49 224 -38 302 209 0 15 chr11 20391297 20391364 -128392108 - MIR SINE MIR -109 153 88 459 145 0 0 chr11 20392054 20392130 -128391342 + MER116 DNA Mariner 2 77 -3 193 269 15 30 chr11 20392600 20392667 -128390805 + MIR SINE MIR 189 254 -8 191 340 57 0 chr11 20393479 20393585 -128389887 + L2 LINE L2 3202 3313 0 257 176 0 0 chr11 20393786 20393837 -128389635 - L1MA9 LINE L1 -71 6241 6191 2679 164 33 35 chr11 20393851 20393884 -128389588 - L1MA9 LINE L1 -232 6080 6048 2398 76 7 7 chr11 20393884 20394186 -128389286 - AluY SINE Alu -9 302 1 2679 164 33 35 chr11 20394186 20394671 -128388801 - L1MA9 LINE L1 -264 6048 5563 275 348 43 0 chr11 20394994 20395109 -128388363 - MIR SINE MIR -56 206 87 5857 27 0 0 chr11 20395169 20395797 -128387675 - SVA Other Other 0 1386 759 234 239 188 26 chr11 20396826 20396943 -128386529 + MIR3 SINE MIR 6 141 -67 1294 182 182 35 chr11 20397224 20397369 -128386103 + L1MB7 LINE L1 5723 5845 -339 1993 142 0 0 chr11 20397369 20397664 -128385808 + AluSx SINE Alu 1 295 -17 1294 182 182 35 chr11 20397664 20397685 -128385787 + L1MB7 LINE L1 5845 5862 -322 2391 127 34 0 chr11 20397685 20398039 -128385433 - MER47A DNA MER2_type 0 366 1 1294 182 182 35 chr11 20398039 20398271 -128385201 + L1MB7 LINE L1 5862 6183 -1 677 250 0 7 chr11 20399009 20399157 -128384315 - MIR SINE MIR -13 249 103 421 328 100 30 chr11 20399927 20400226 -128383246 - L2 LINE L2 0 3272 2953 384 111 0 0 chr11 20400679 20400742 -128382730 + (TTCCC)n Simple_repeat Simple_repeat 2 64 0 * 422 132 0 49 chr11 20400727 20400871 -128382601 + (TTTC)n Simple_repeat Simple_repeat 1 137 0 314 131 49 16 chr11 20400871 20400932 -128382540 + CT-rich Low_complexity Low_complexity 5 67 0 940 219 131 8 chr11 20400932 20401169 -128382303 - AluSg SINE Alu -44 266 1 554 335 27 0 chr11 20401217 20401405 -128382067 - MIR SINE MIR -16 246 54 492 255 30 0 chr11 20451881 20451993 -128331479 - MIR3 SINE MIR -35 173 58 186 43 0 0 chr11 20452528 20452551 -128330921 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1980 117 33 0 chr11 20452554 20452827 -128330645 - AluSx SINE Alu -30 282 1 247 257 99 10 chr11 20454763 20454864 -128328608 + L1M4 LINE L1 3743 3852 -2294 23 54 0 0 chr11 20455293 20455330 -128328142 + AT_rich Low_complexity Low_complexity 1 37 0 508 118 26 0 chr11 20456434 20456510 -128326962 - L1PA7 LINE L1 -3 6151 6074 740 125 230 3 chr11 20456610 20456770 -128326702 - Charlie3 DNA MER1_type -2443 267 25 1795 134 10 14 chr11 20457411 20457703 -128325769 + AluY SINE Alu 1 291 -20 26 0 0 0 chr11 20459211 20459237 -128324235 + AT_rich Low_complexity Low_complexity 1 26 0 530 217 101 29 chr11 20459460 20459598 -128323874 - FRAM SINE Alu -21 155 8 26 0 0 0 chr11 20460053 20460079 -128323393 + AT_rich Low_complexity Low_complexity 1 26 0 747 222 156 26 chr11 20460157 20460459 -128323013 + Charlie7 DNA MER1_type 320 660 -1952 279 259 93 54 chr11 20460495 20460773 -128322699 + Charlie7 DNA MER1_type 2207 2495 -117 31 68 0 0 chr11 20463674 20463733 -128319739 + AT_rich Low_complexity Low_complexity 1 59 0 3611 165 7 8 chr11 20463961 20464555 -128318917 + L1PA15 LINE L1 5571 6163 -2 23 0 0 0 chr11 20464667 20464690 -128318782 + AT_rich Low_complexity Low_complexity 1 23 0 599 314 66 5 chr11 20465505 20465768 -128317704 + L1MC/D LINE L1 5405 5683 -651 22 35 0 0 chr11 20466454 20466483 -128316989 + AT_rich Low_complexity Low_complexity 1 29 0 298 204 0 0 chr11 20466735 20466784 -128316688 - Tigger3(Golem) DNA MER2_type 0 3037 2989 1973 150 10 0 chr11 20467438 20467732 -128315740 - AluSx SINE Alu -15 297 1 279 292 23 39 chr11 20467864 20467994 -128315478 - MIR SINE MIR -13 249 122 1449 195 40 14 chr11 20468101 20468398 -128315074 - AluSx SINE Alu -7 305 1 25 0 0 0 chr11 20468398 20468423 -128315049 + AT_rich Low_complexity Low_complexity 1 25 0 1278 234 65 15 chr11 20468464 20468866 -128314606 + L1MCc LINE L1 50 471 -5952 1892 251 82 10 chr11 20469427 20470108 -128313364 + L1M4 LINE L1 3085 3814 -2332 181 311 78 0 chr11 20470235 20470325 -128313147 - MIR3 SINE MIR -97 111 15 203 268 61 37 chr11 20470596 20470678 -128312794 + MIR SINE MIR 8 91 -171 374 233 75 82 chr11 20470692 20470838 -128312634 - MIR SINE MIR -15 247 103 293 169 91 52 chr11 20470909 20470986 -128312486 + MIR SINE MIR 162 241 -21 * 419 357 103 26 chr11 20470962 20471312 -128312160 - L2 LINE L2 -27 3245 2869 2195 99 0 60 chr11 20472440 20472772 -128310700 + AluSq SINE Alu 2 313 0 262 231 30 101 chr11 20473671 20473720 -128309752 - L1ME LINE L1 -241 5880 5829 2326 101 0 9 chr11 20473720 20474036 -128309436 - AluSq SINE Alu 0 313 1 262 231 30 101 chr11 20474036 20474155 -128309317 - L1ME LINE L1 -292 5829 5724 2476 60 0 29 chr11 20474156 20474470 -128309002 - AluY SINE Alu 0 311 7 381 254 151 8 chr11 20475027 20475153 -128308319 + MIR SINE MIR 47 190 -72 349 299 39 16 chr11 20475295 20475422 -128308050 - MIR SINE MIR -117 145 16 976 290 126 70 chr11 20475613 20476673 -128306799 - L2 LINE L2 -202 3070 1891 22 35 0 0 chr11 20476922 20476951 -128306521 + AT_rich Low_complexity Low_complexity 1 29 0 4318 164 29 10 chr11 20477932 20478725 -128304747 - L1PA16 LINE L1 -2 6164 5357 454 313 70 51 chr11 20479649 20479905 -128303567 - L3 LINE CR1 -115 1462 1202 252 0 0 0 chr11 20480639 20480667 -128302805 + (TG)n Simple_repeat Simple_repeat 1 28 0 262 244 56 0 chr11 20480974 20481064 -128302408 - MIR SINE MIR 0 262 168 557 280 140 10 chr11 20481070 20481263 -128302209 - MIR SINE MIR 0 262 45 2427 85 0 22 chr11 20481407 20481725 -128301747 + AluY SINE Alu 1 311 0 248 232 49 73 chr11 20482791 20482873 -128300599 + L2 LINE L2 3217 3296 -17 2149 52 0 0 chr11 20482883 20483131 -128300341 + L1PA5 LINE L1 5905 6152 -2 1552 214 30 28 chr11 20483178 20483542 -128299930 - MLT1A1 LTR MaLR 0 365 1 215 284 67 77 chr11 20483723 20483917 -128299555 - L2 LINE L2 -178 3094 2903 312 349 31 42 chr11 20484561 20484753 -128298719 - MIR SINE MIR -62 200 11 181 225 0 0 chr11 20485606 20485646 -128297826 + MIR SINE MIR 108 147 -115 384 250 40 30 chr11 20486116 20486216 -128297256 + MIR SINE MIR 2 102 -160 496 167 0 0 chr11 20486542 20486614 -128296858 + AluJ/FRAM SINE Alu 225 296 -16 213 288 206 0 chr11 20486616 20486689 -128296783 - MIR SINE MIR -77 131 44 1810 164 30 7 chr11 20486698 20486997 -128296475 - AluJb SINE Alu -6 306 1 2062 103 39 0 chr11 20487833 20488114 -128295358 + AluSx SINE Alu 1 292 -20 330 375 100 0 chr11 20488882 20489042 -128294430 + MIR3 SINE MIR 12 187 -21 480 251 130 100 chr11 20489449 20489819 -128293653 + L2 LINE L2 2842 3222 -50 193 282 82 24 chr11 20489815 20489900 -128293572 - MIR SINE MIR -127 135 46 * 815 259 75 21 chr11 20491090 20491329 -128292143 - MIR SINE MIR -7 255 4 470 316 44 18 chr11 20491350 20491575 -128291897 - L1ME4a LINE L1 -223 5898 5668 625 88 0 0 chr11 20491925 20492005 -128291467 + MADE1 DNA Mariner 1 80 0 513 130 13 13 chr11 20492044 20492121 -128291351 + AluS SINE Alu 2 78 -235 1211 166 92 56 chr11 20492665 20492884 -128290588 + L1MC2 LINE L1 5996 6233 -111 1477 173 90 0 chr11 20492884 20493150 -128290322 + AluJo SINE Alu 3 292 -20 1211 166 92 56 chr11 20493150 20493267 -128290205 + L1MC2 LINE L1 6233 6344 0 194 325 12 25 chr11 20493307 20493387 -128290085 + MER5A DNA MER1_type 111 189 0 343 281 247 7 chr11 20494541 20494687 -128288785 - MER5A DNA MER1_type 0 189 9 324 0 0 0 chr11 20502129 20502165 -128281307 + (TG)n Simple_repeat Simple_repeat 2 37 0 442 245 105 19 chr11 20502289 20502499 -128280973 - MIR SINE MIR -6 256 18 522 289 60 60 chr11 20503486 20503735 -128279737 + MIR SINE MIR 14 262 0 549 240 176 10 chr11 20503879 20504083 -128279389 + MIR SINE MIR 13 250 -12 444 258 77 32 chr11 20504103 20504258 -128279214 + MIR SINE MIR 20 181 -81 196 393 0 0 chr11 20504669 20504758 -128278714 + MIR SINE MIR 161 249 -13 280 312 70 32 chr11 20504858 20505044 -128278428 - MIR3 SINE MIR -5 203 11 1300 170 9 136 chr11 20505509 20505658 -128277814 + AluJo SINE Alu 1 87 -215 1978 137 0 0 chr11 20505658 20505957 -128277515 + AluSx SINE Alu 1 299 -13 1300 170 9 136 chr11 20505957 20506137 -128277335 + AluJo SINE Alu 87 288 -14 277 231 97 107 chr11 20506542 20506758 -128276714 + L2 LINE L2 3078 3291 -22 386 324 76 7 chr11 20506994 20507139 -128276333 + MIR SINE MIR 50 204 -58 1757 149 9 40 chr11 20507752 20508074 -128275398 + AluSx SINE Alu 1 312 0 603 271 97 78 chr11 20508265 20508727 -128274745 + L2 LINE L2 2836 3306 -7 2266 99 0 0 chr11 20509112 20509414 -128274058 + AluSx SINE Alu 2 303 -9 252 171 0 0 chr11 20509455 20509496 -128273976 + Charlie4 DNA MER1_type 9 49 -1912 180 306 30 75 chr11 20509985 20510073 -128273399 - L2 LINE L2 0 3313 3231 1552 164 20 36 chr11 20510073 20510377 -128273095 + AluJo SINE Alu 1 299 -13 180 306 30 75 chr11 20510377 20510422 -128273050 - L2 LINE L2 -82 3231 3186 503 294 108 34 chr11 20510467 20510736 -128272736 - L2 LINE L2 -44 3269 2981 769 261 108 15 chr11 20510746 20511122 -128272350 - MLT1J2 LTR MaLR -11 439 2 185 384 123 21 chr11 20511145 20511429 -128272043 - L2 LINE L2 -345 2969 2657 673 270 74 74 chr11 20511440 20511803 -128271669 + L2 LINE L2 2871 3233 -80 862 254 208 28 chr11 20511847 20512382 -128271090 - L2 LINE L2 -751 2563 1933 473 291 64 49 chr11 20512886 20513089 -128270383 + MIR SINE MIR 9 214 -48 1806 106 44 31 chr11 20513345 20513638 -128269834 - AluSq SINE Alu -14 299 3 1568 82 0 10 chr11 20515052 20515258 -128268214 - AluSg SINE Alu -105 205 2 428 256 196 30 chr11 20515258 20515457 -128268015 - MIR SINE MIR -3 259 28 21 71 0 0 chr11 20517497 20517539 -128265933 + AT_rich Low_complexity Low_complexity 1 42 0 1771 171 20 0 chr11 20517571 20517876 -128265596 + AluJb SINE Alu 1 311 -1 214 309 50 72 chr11 20518764 20518903 -128264569 - L2 LINE L2 0 3272 3137 184 227 0 0 chr11 20518925 20518969 -128264503 + L2 LINE L2 3229 3272 0 439 312 48 106 chr11 20519185 20519583 -128263889 - L2 LINE L2 -3 3269 2895 * 485 198 69 26 chr11 20519581 20519697 -128263775 - L2 LINE L2 -3 3310 3190 758 229 55 28 chr11 20519841 20520094 -128263378 - MIR SINE MIR -1 261 2 366 323 32 42 chr11 20520735 20520924 -128262548 + MIR SINE MIR 8 194 -68 329 228 182 27 chr11 20521216 20521377 -128262095 - MIR SINE MIR -34 228 31 232 194 0 28 chr11 20521847 20521919 -128261553 + GA-rich Low_complexity Low_complexity 1 70 0 226 310 115 35 chr11 20521999 20522151 -128261321 - MIR SINE MIR -37 171 18 192 204 20 41 chr11 20524320 20524369 -128259103 + MIR SINE MIR 194 241 -21 377 242 75 17 chr11 20524478 20524598 -128258874 - MER102b DNA MER1_type 0 341 215 370 335 27 27 chr11 20524759 20524944 -128258528 - MIR3 SINE MIR -4 204 20 372 261 94 29 chr11 20525149 20525287 -128258185 + L2 LINE L2 3126 3272 0 555 266 94 26 chr11 20527110 20527302 -128256170 - MLT1K LTR MaLR -57 531 327 252 0 0 0 chr11 20527329 20527357 -128256115 + (TG)n Simple_repeat Simple_repeat 1 28 0 355 177 71 71 chr11 20527383 20527496 -128255976 + MER103 DNA DNA 8 120 -46 526 330 68 34 chr11 20528656 20528892 -128254580 + MIR SINE MIR 2 245 -17 380 324 20 34 chr11 20529701 20529861 -128253611 + MIR SINE MIR 16 170 -66 2287 99 0 6 chr11 20529962 20530276 -128253196 - AluSx SINE Alu 0 312 1 571 288 148 34 chr11 20530360 20530876 -128252596 - L2 LINE L2 -230 3083 2485 271 273 26 26 chr11 20531906 20531983 -128251489 + MIR SINE MIR 65 141 -67 559 267 70 52 chr11 20532158 20532488 -128250984 + MER102b DNA MER1_type 5 340 -1 329 300 0 18 chr11 20533194 20533304 -128250168 + L1ME3 LINE L1 6030 6137 -25 2080 136 0 3 chr11 20534356 20534665 -128248807 + AluSx SINE Alu 1 308 -4 321 319 262 0 chr11 20534693 20534884 -128248588 + MIR SINE MIR 9 249 -13 709 51 20 0 chr11 20535734 20535832 -128247640 - L1PB2 LINE L1 -2 6149 6050 217 150 0 25 chr11 20537372 20537412 -128246060 + (GGAA)n Simple_repeat Simple_repeat 2 40 0 805 260 18 0 chr11 20538153 20538322 -128245150 + MIR SINE MIR 35 206 -56 509 280 37 47 chr11 20540105 20540319 -128243153 + MIR SINE MIR 51 262 0 238 275 29 0 chr11 20540675 20540744 -128242728 + MIR SINE MIR 45 115 -147 480 266 57 38 chr11 20541037 20541201 -128242271 + MIR3 SINE MIR 2 183 -25 244 313 92 95 chr11 20542029 20542333 -128241139 - L2 LINE L2 -158 3114 2812 2157 104 7 0 chr11 20542709 20543007 -128240465 + AluSp SINE Alu 1 300 -13 359 330 127 50 chr11 20543278 20543499 -128239973 + L1ME4a LINE L1 5884 6121 0 461 164 17 121 chr11 20544070 20544107 -128239365 + MIR SINE MIR 87 126 -136 2202 109 0 0 chr11 20544107 20544411 -128239061 - AluSg SINE Alu -3 307 4 461 164 17 121 chr11 20544411 20544489 -128238983 + MIR SINE MIR 126 190 -72 359 275 119 0 chr11 20544504 20544613 -128238859 + L2 LINE L2 3187 3308 -5 2114 106 0 7 chr11 20544795 20545096 -128238376 - AluSx SINE Alu -13 299 1 195 268 56 14 chr11 20545665 20545736 -128237736 - L2 LINE L2 0 3272 3199 342 361 48 36 chr11 20546218 20546384 -128237088 + MIR3 SINE MIR 33 200 -8 1214 213 17 17 chr11 20547358 20547597 -128235875 + MIR SINE MIR 24 262 0 418 262 37 9 chr11 20547597 20547704 -128235768 + L2 LINE L2 3190 3299 -14 296 245 191 0 chr11 20547833 20547927 -128235545 + MIR SINE MIR 83 194 -68 1713 126 4 47 chr11 20548734 20549012 -128234460 - AluSx SINE Alu -46 266 1 297 125 0 62 chr11 20549022 20549086 -128234386 - MER53 DNA DNA -124 65 6 412 293 107 0 chr11 20549733 20549873 -128233599 + MIR SINE MIR 20 174 -88 207 211 0 0 chr11 20549963 20550001 -128233471 + A-rich Low_complexity Low_complexity 2 39 0 207 302 124 70 chr11 20550082 20550324 -128233148 - L2 LINE L2 -3 3269 3015 276 313 159 29 chr11 20550360 20550568 -128232904 - L2 LINE L2 -220 3052 2818 221 266 52 117 chr11 20551417 20551571 -128231901 + MER5A DNA MER1_type 44 187 -2 23412 76 13 11 chr11 20552181 20556163 -128227309 - L1PA7 LINE L1 -3 6151 2151 2258 69 0 69 chr11 20556429 20556763 -128226709 - AluY SINE Alu 0 311 1 233 299 138 46 chr11 20557318 20557492 -128225980 - MIR SINE MIR -71 191 2 280 311 132 9 chr11 20557534 20557640 -128225832 - L2 LINE L2 -6 3266 3148 245 335 0 27 chr11 20561399 20561515 -128221957 + MIR SINE MIR 42 150 -93 238 333 32 11 chr11 20561796 20561889 -128221583 + MIR SINE MIR 118 212 -50 2028 141 0 6 chr11 20562131 20562444 -128221028 - AluSx SINE Alu -1 311 1 388 171 81 81 chr11 20563322 20563433 -128220039 + L1MCa LINE L1 2242 2352 -4074 657 122 50 0 chr11 20563434 20563573 -128219899 + L1MCa LINE L1 2322 2467 -3959 250 214 0 18 chr11 20564522 20564578 -128218894 + L2 LINE L2 3257 3311 -2 427 269 87 0 chr11 20564676 20564825 -128218647 - MER103 DNA DNA -4 162 1 370 252 122 41 chr11 20566852 20566975 -128216497 - L2 LINE L2 -1 3271 3139 232 108 0 0 chr11 20567036 20567073 -128216399 - L1MB7 LINE L1 -16 6168 6132 1128 98 6 38 chr11 20567074 20567297 -128216175 - AluSg/x SINE Alu 0 312 134 345 158 0 0 chr11 20567297 20567354 -128216118 - L1MB7 LINE L1 -44 6140 6084 387 252 293 0 chr11 20569704 20569827 -128213645 + MIR3 SINE MIR 49 207 -1 214 229 43 29 chr11 20570180 20570250 -128213222 + MIR SINE MIR 22 92 -116 2160 103 3 7 chr11 20570411 20570734 -128212738 - AluSx SINE Alu 0 312 3 2000 115 0 30 chr11 20571200 20571504 -128211968 + AluSx SINE Alu 3 297 -15 265 177 65 0 chr11 20571802 20571864 -128211608 - MER113 DNA MER1_type? -1 520 455 34 24 0 0 chr11 20571875 20571916 -128211556 + AT_rich Low_complexity Low_complexity 1 41 0 356 248 29 0 chr11 20571981 20572086 -128211386 - MER113 DNA MER1_type? -413 108 1 1702 223 71 21 chr11 20573952 20574433 -128209039 + MLT1D LTR MaLR 1 505 0 700 261 60 23 chr11 20574489 20574704 -128208768 - MIR SINE MIR 0 262 40 577 224 201 0 chr11 20575572 20575746 -128207726 - MER3 DNA MER1_type 0 209 1 389 284 21 0 chr11 20575838 20575933 -128207539 + MIR SINE MIR 96 192 -70 1834 145 13 13 chr11 20575981 20576285 -128207187 - AluSx SINE Alu -8 304 1 2056 112 3 20 chr11 20577444 20577749 -128205723 - AluSx SINE Alu -8 304 5 1318 226 139 6 chr11 20578033 20578392 -128205080 - MLT1I LTR MaLR 0 409 3 306 341 133 7 chr11 20578733 20578868 -128204604 - L2 LINE L2 -19 3253 3102 2259 85 3 13 chr11 20579124 20579440 -128204032 + AluSq SINE Alu 1 313 0 234 296 37 0 chr11 20579685 20579766 -128203706 - MIR3 SINE MIR -5 203 120 495 263 125 0 chr11 20579912 20580064 -128203408 + MIR3 SINE MIR 14 184 -24 401 267 10 10 chr11 20580947 20581048 -128202424 - MIR SINE MIR -69 139 39 701 310 52 4 chr11 20582352 20582581 -128200891 - MIR SINE MIR 0 262 23 201 250 185 28 chr11 20582874 20582982 -128200490 + L2 LINE L2 3140 3264 -8 237 210 0 0 chr11 20583113 20583175 -128200297 + CT-rich Low_complexity Low_complexity 5 66 0 748 312 84 29 chr11 20583192 20583893 -128199579 + L2 LINE L2 2582 3313 0 2157 89 3 7 chr11 20584239 20584530 -128198942 - AluSq SINE Alu -23 290 1 283 247 34 34 chr11 20584626 20584715 -128198757 + MIR SINE MIR 162 250 -12 230 188 16 78 chr11 20584750 20584814 -128198658 - MIR SINE MIR -121 141 82 247 294 73 73 chr11 20585733 20585951 -128197521 + L2 LINE L2 2632 2849 -465 2262 110 0 0 chr11 20586666 20586976 -128196496 - AluSg SINE Alu 0 310 1 217 243 0 81 chr11 20587109 20587183 -128196289 - MIR SINE MIR -78 184 117 260 305 114 15 chr11 20588955 20589086 -128194386 - MIR SINE MIR -111 151 8 781 296 113 10 chr11 20591186 20591575 -128191897 - MLT1K LTR MaLR -16 572 144 22 0 0 0 chr11 20592286 20592308 -128191164 + AT_rich Low_complexity Low_complexity 1 22 0 414 0 0 0 chr11 20592995 20593041 -128190431 + (TG)n Simple_repeat Simple_repeat 2 47 0 195 167 0 0 chr11 20594005 20594047 -128189425 + (TAA)n Simple_repeat Simple_repeat 3 44 0 390 289 38 57 chr11 20594092 20594251 -128189221 - MIR SINE MIR -79 183 28 308 302 56 20 chr11 20594465 20594611 -128188861 - MER5A DNA MER1_type -28 161 3 605 312 44 0 chr11 20594889 20595094 -128188378 + MIR SINE MIR 14 227 -35 620 286 61 9 chr11 20596319 20596532 -128186940 - MIR SINE MIR -16 246 23 451 281 128 71 chr11 20597133 20597687 -128185785 + L2 LINE L2 2593 3239 -33 805 282 18 14 chr11 20597705 20597925 -128185547 + MIR SINE MIR 13 233 -29 600 111 0 0 chr11 20598655 20598745 -128184727 + (TA)n Simple_repeat Simple_repeat 2 91 0 306 103 0 0 chr11 20598791 20598830 -128184642 + Alu SINE Alu 1 39 -263 327 248 233 0 chr11 20599819 20599948 -128183524 - MIR SINE MIR -11 251 93 23 0 0 0 chr11 20600150 20600173 -128183299 + AT_rich Low_complexity Low_complexity 1 23 0 289 302 35 0 chr11 20601145 20601231 -128182241 + MIR3 SINE MIR 74 162 -46 209 302 126 38 chr11 20602109 20602268 -128181204 + MIR3 SINE MIR 7 179 -29 370 264 83 0 chr11 20602600 20602721 -128180751 + MIR SINE MIR 108 238 -24 1495 181 10 17 chr11 20603148 20603441 -128180031 + AluJo SINE Alu 1 291 -21 694 226 125 0 chr11 20603541 20603709 -128179763 - MER63A DNA MER1_type -1 209 21 406 302 0 10 chr11 20603730 20603826 -128179646 - MIR SINE MIR -166 96 2 195 368 0 15 chr11 20604244 20604312 -128179160 - L2 LINE L2 -16 3256 3190 2392 51 7 0 chr11 20604784 20605077 -128178395 + AluY SINE Alu 11 305 -6 1259 188 113 4 chr11 20605084 20605350 -128178122 + AluSc SINE Alu 1 295 -14 27 0 0 0 chr11 20605681 20605708 -128177764 + AT_rich Low_complexity Low_complexity 1 27 0 210 240 0 20 chr11 20609772 20609822 -128173650 + CT-rich Low_complexity Low_complexity 4 52 0 353 289 104 22 chr11 20610150 20610285 -128173187 - MER5A DNA MER1_type -35 154 9 216 328 172 23 chr11 20610354 20610528 -128172944 - MIR SINE MIR -13 249 50 1846 141 3 13 chr11 20611011 20611315 -128172157 + AluSx SINE Alu 1 301 -11 654 221 45 19 chr11 20611514 20611668 -128171804 - MLT1E LTR MaLR 0 593 436 1372 265 98 37 chr11 20611718 20612040 -128171432 + L1ME3A LINE L1 4030 4331 -1815 2288 69 3 3 chr11 20612040 20612343 -128171129 + AluY SINE Alu 1 303 -8 1372 265 98 37 chr11 20612343 20612786 -128170686 + L1ME3A LINE L1 4331 4842 -1304 1575 164 3 44 chr11 20613004 20613179 -128170293 - AluJo SINE Alu -4 308 150 2044 119 3 3 chr11 20613179 20613482 -128169990 - AluSx SINE Alu -9 303 1 1575 164 3 44 chr11 20613482 20613624 -128169848 - AluJo SINE Alu -162 150 4 2134 109 0 0 chr11 20613717 20614010 -128169462 + AluSg SINE Alu 1 293 -17 395 287 155 64 chr11 20614084 20614380 -128169092 + LTR16C LTR ERVL 75 397 -94 249 133 107 93 chr11 20614418 20614493 -128168979 + MER96 DNA MER1_type? 98 173 -2 303 226 145 54 chr11 20614569 20614588 -128168884 + L1ME3A LINE L1 5621 5637 -533 971 260 48 54 chr11 20614588 20614980 -128168492 + MLT1B LTR MaLR 1 390 0 303 226 145 54 chr11 20614980 20615366 -128168106 + L1ME3A LINE L1 5637 6071 -99 1774 202 22 14 chr11 20615366 20615728 -128167744 + MLT1A1 LTR MaLR 1 365 0 303 226 145 54 chr11 20615728 20615794 -128167678 + L1ME3A LINE L1 6071 6130 -40 201 204 37 19 chr11 20615976 20616030 -128167442 + MIR SINE MIR 62 116 -92 398 330 94 17 chr11 20616166 20616397 -128167075 + L3 LINE CR1 1306 1554 -23 242 236 139 67 chr11 20616397 20616562 -128166910 + MIR3 SINE MIR 1 177 -31 1986 132 0 0 chr11 20616836 20617125 -128166347 + AluSx SINE Alu 3 291 -21 241 246 49 0 chr11 20617328 20617389 -128166083 - MIR SINE MIR -153 109 46 380 268 25 108 chr11 20617627 20617784 -128165688 + MIR SINE MIR 38 181 -27 3671 136 101 18 chr11 20617784 20618437 -128165035 - MER39 LTR ERV1 0 707 1 1889 175 49 31 chr11 20618505 20618894 -128164578 - MSTD LTR MaLR 0 396 1 219 309 41 10 chr11 20618971 20619068 -128164404 + MIR SINE MIR 30 129 -79 741 181 0 45 chr11 20619331 20619362 -128164110 - AluJo/FRAM SINE Alu -9 303 272 1958 136 0 41 chr11 20619362 20619679 -128163793 + AluSx SINE Alu 1 304 -8 741 181 0 45 chr11 20619679 20619802 -128163670 - AluJo/FRAM SINE Alu -40 272 156 427 152 13 38 chr11 20619827 20619906 -128163566 + MER45A DNA AcHobo 102 178 0 353 277 40 40 chr11 20619920 20620068 -128163404 - MLT1K LTR MaLR -424 164 17 5522 191 51 31 chr11 20620225 20621524 -128161948 + L1M3f LINE L1 1 1289 -4137 1909 142 3 10 chr11 20621524 20621833 -128161639 + AluJb SINE Alu 1 307 -5 5522 191 51 31 chr11 20621833 20621908 -128161564 + L1M3f LINE L1 1289 1361 -4065 423 210 0 0 chr11 20621928 20622009 -128161463 - MIR SINE MIR -32 230 150 940 281 59 32 chr11 20622574 20623169 -128160303 + L1MC4 LINE L1 6362 7058 -835 497 291 67 27 chr11 20623461 20623684 -128159788 + MER102a DNA MER1_type 98 329 -1 407 19 19 0 chr11 20623785 20623837 -128159635 + (TG)n Simple_repeat Simple_repeat 1 53 0 2024 135 0 0 chr11 20623963 20624259 -128159213 + AluSx SINE Alu 1 296 -16 705 283 187 39 chr11 20624579 20624964 -128158508 + MLT1L LTR MaLR 12 453 -162 2275 106 0 0 chr11 20625437 20625749 -128157723 + AluSx SINE Alu 1 312 0 379 290 16 32 chr11 20625849 20625973 -128157499 - MIR SINE MIR -106 156 35 829 263 12 40 chr11 20626352 20626599 -128156873 + MIR SINE MIR 20 259 -3 349 310 10 0 chr11 20627277 20627377 -128156095 + L2 LINE L2 1700 1800 -1514 400 203 0 14 chr11 20627378 20627452 -128156020 + MER112 DNA MER1_type 6 78 -182 307 198 104 38 chr11 20627494 20627600 -128155872 + MER112 DNA MER1_type 60 172 -88 22 0 0 0 chr11 20627603 20627625 -128155847 + AT_rich Low_complexity Low_complexity 1 22 0 365 300 82 21 chr11 20627914 20628147 -128155325 - L1M4 LINE L1 -1095 5051 4805 327 328 76 25 chr11 20628153 20628467 -128155005 + L2 LINE L2 1840 2169 -1145 643 286 86 9 chr11 20628674 20628894 -128154578 + MLT1J LTR MaLR 92 328 -183 603 302 88 73 chr11 20629121 20629505 -128153967 + L2 LINE L2 2467 2856 -458 2356 123 40 0 chr11 20629592 20629941 -128153531 + THE1B LTR MaLR 2 364 0 494 286 208 31 chr11 20629941 20630235 -128153237 + L2 LINE L2 2963 3308 -5 2070 123 3 7 chr11 20630285 20630593 -128152879 + AluSx SINE Alu 2 308 -4 1109 182 19 37 chr11 20631550 20631819 -128151653 - L1MC3 LINE L1 0 7785 7522 264 294 176 20 chr11 20632142 20632295 -128151177 + MIR SINE MIR 54 230 -32 3842 117 8 0 chr11 20632414 20632936 -128150536 - MER1A DNA MER1_type 0 527 2 226 281 129 29 chr11 20633161 20633300 -128150172 + MIR SINE MIR 110 262 0 2882 133 20 7 chr11 20633718 20634175 -128149297 - MER50 LTR ERV1 -271 463 1 301 304 14 34 chr11 20634200 20634348 -128149124 - L2 LINE L2 -1077 2237 2093 9369 201 59 49 chr11 20634615 20635115 -128148357 + Charlie1 DNA MER1_type 2 495 -2266 1864 141 28 75 chr11 20635115 20635270 -128148202 - MER2 DNA MER2_type 0 344 183 1975 119 7 13 chr11 20635270 20635572 -128147900 + AluJb SINE Alu 9 308 -4 1864 141 28 75 chr11 20635572 20635777 -128147695 - MER2 DNA MER2_type -161 183 1 9369 201 59 49 chr11 20635777 20635830 -128147642 + Charlie1 DNA MER1_type 495 546 -2215 2142 115 0 0 chr11 20635830 20636135 -128147337 + AluSc SINE Alu 1 305 -4 9369 201 59 49 chr11 20636135 20636516 -128146956 + Charlie1 DNA MER1_type 546 922 -1839 1904 126 14 3 chr11 20636516 20636809 -128146663 + AluSx SINE Alu 3 298 -14 243 0 0 0 chr11 20636812 20636839 -128146633 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 9369 201 59 49 chr11 20636839 20637552 -128145920 + Charlie1 DNA MER1_type 923 1627 -1134 2022 102 0 3 chr11 20637552 20637883 -128145589 + AluSx SINE Alu 1 330 0 9369 201 59 49 chr11 20637883 20638622 -128144850 + Charlie1 DNA MER1_type 1627 2357 -404 1592 187 10 3 chr11 20638622 20638916 -128144556 + AluJb SINE Alu 1 296 -16 9369 201 59 49 chr11 20638916 20638946 -128144526 + Charlie1 DNA MER1_type 2357 2385 -376 1523 103 3 141 chr11 20638946 20639286 -128144186 - AluSx SINE Alu -19 293 1 9369 201 59 49 chr11 20639286 20639514 -128143958 + Charlie1 DNA MER1_type 2385 2759 -2 268 250 213 9 chr11 20639735 20639843 -128143629 + MIR SINE MIR 77 206 -56 226 182 0 73 chr11 20639963 20640018 -128143454 + MIR SINE MIR 201 251 -11 * 243 88 0 0 chr11 20639986 20640020 -128143452 + L2 LINE L2 3265 3298 -15 201 130 0 43 chr11 20640247 20640265 -128143207 + (A)n Simple_repeat Simple_repeat 1 18 -26 2311 80 0 10 chr11 20640265 20640579 -128142893 + AluY SINE Alu 1 311 0 201 130 0 43 chr11 20640579 20640606 -128142866 + (A)n Simple_repeat Simple_repeat 18 44 0 209 408 48 0 chr11 20640703 20640806 -128142666 - L2 LINE L2 0 3272 3165 2006 121 10 0 chr11 20640914 20641212 -128142260 + AluSx SINE Alu 1 301 -11 194 81 27 0 chr11 20641222 20641259 -128142213 + (CAAA)n Simple_repeat Simple_repeat 4 41 0 2694 146 28 19 chr11 20641454 20641927 -128141545 - L1MB2 LINE L1 -8 6163 5687 603 282 55 6 chr11 20642905 20643086 -128140386 + MIR3 SINE MIR 16 205 -3 204 186 47 0 chr11 20644979 20645022 -128138450 + MIR SINE MIR 101 145 -63 26 30 0 0 chr11 20645639 20645672 -128137800 + AT_rich Low_complexity Low_complexity 1 33 0 345 24 0 0 chr11 20646284 20646326 -128137146 + (TGG)n Simple_repeat Simple_repeat 1 42 0 191 236 69 56 chr11 20650312 20650384 -128133088 + L3 LINE CR1 1370 1442 -135 310 269 0 21 chr11 20650527 20650620 -128132852 + CT-rich Low_complexity Low_complexity 1 91 0 214 182 0 0 chr11 20652680 20652724 -128130748 + T-rich Low_complexity Low_complexity 1 44 0 25 51 0 0 chr11 20653055 20653094 -128130378 + AT_rich Low_complexity Low_complexity 1 39 0 412 200 0 0 chr11 20653094 20653164 -128130308 - FLAM_A SINE Alu -16 117 48 306 241 27 27 chr11 20653205 20653317 -128130155 + MIR3 SINE MIR 82 193 -15 330 125 0 0 chr11 20653948 20653996 -128129476 - LTR48 LTR ERV1 -344 443 396 840 124 47 0 chr11 20654020 20654149 -128129323 + AluJo SINE Alu 1 135 -177 1426 185 104 45 chr11 20654175 20654307 -128129165 - LTR48 LTR ERV1 -410 377 254 2250 73 50 20 chr11 20654307 20654609 -128128863 - AluY SINE Alu 0 311 1 1426 185 104 45 chr11 20654609 20654832 -128128640 - LTR48 LTR ERV1 -533 254 1 568 263 46 69 chr11 20655594 20656007 -128127465 + LTR33 LTR ERVL 1 452 -69 905 344 90 19 chr11 20656265 20656643 -128126829 - MER115 DNA AcHobo -287 406 2 4234 135 26 3 chr11 20656676 20657870 -128125602 - L1MA6 LINE L1 -408 5892 4676 247 301 21 0 chr11 20657898 20657991 -128125481 + L3 LINE CR1 1191 1285 -292 192 191 64 0 chr11 20658041 20658088 -128125384 + L2 LINE L2 2679 2728 -586 384 242 8 32 chr11 20658093 20658217 -128125255 - L2 LINE L2 -1 3312 3192 467 171 26 68 chr11 20658474 20658591 -128124881 + MIR SINE MIR 64 175 -87 1857 155 10 13 chr11 20658727 20659031 -128124441 - AluSx SINE Alu -9 303 1 500 262 0 27 chr11 20659096 20659245 -128124227 - MIR SINE MIR -14 248 104 1629 216 43 26 chr11 20659255 20659791 -128123681 + MLT2F LTR ERVL 1 620 -43 263 26 51 0 chr11 20660847 20660886 -128122586 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 1576 90 36 5 chr11 20661303 20661526 -128121946 - MER30 DNA MER1_type 0 230 1 2265 114 3 3 chr11 20661721 20662027 -128121445 + AluSx SINE Alu 1 306 -6 21 36 0 0 chr11 20662373 20662401 -128121071 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 20662439 20662460 -128121012 + AT_rich Low_complexity Low_complexity 1 21 0 223 248 58 83 chr11 20662960 20663081 -128120391 + L2 LINE L2 2769 2886 -428 197 294 73 15 chr11 20663169 20663237 -128120235 + L2 LINE L2 3000 3071 -201 542 268 60 11 chr11 20663402 20663585 -128119887 - MIR SINE MIR -70 192 1 352 233 177 33 chr11 20663782 20664280 -128119192 + L1ME4a LINE L1 5510 6093 -28 1246 151 5 24 chr11 20664505 20664710 -128118762 - AluJo SINE Alu -16 296 96 2463 95 0 0 chr11 20666400 20666705 -128116767 + AluSx SINE Alu 1 305 -7 2044 164 86 0 chr11 20666816 20667187 -128116285 - MER57A LTR ERV1 0 403 1 185 255 21 0 chr11 20667530 20667577 -128115895 - MIR3 SINE MIR -11 197 150 363 86 0 23 chr11 20667744 20667812 -128115660 - tRNA-Cys-TGC tRNA tRNA -11 64 1 4342 80 2 0 chr11 20668005 20668558 -128114914 + MER41A LTR ERV1 1 554 0 318 130 325 0 chr11 20668642 20668719 -128114753 + MER41A-int LTR ERV1 1 102 -5844 5511 203 102 15 chr11 20668728 20670292 -128113180 + MER41A-int LTR ERV1 1 1789 -4157 1703 66 0 0 chr11 20670266 20670477 -128112995 + MER41A-int LTR ERV1 1952 2162 -4101 * 9329 130 50 26 chr11 20670471 20672480 -128110992 + MER41A-int LTR ERV1 2629 3726 -1289 321 186 0 0 chr11 20672581 20672640 -128110832 + Charlie1 DNA MER1_type 2689 2747 -14 225 297 0 0 chr11 20673010 20673074 -128110398 - MIR SINE MIR -79 129 66 309 109 0 0 chr11 20673187 20673233 -128110239 + (CA)n Simple_repeat Simple_repeat 1 46 0 984 56 0 8 chr11 20673233 20673358 -128110114 - L1PA5 LINE L1 -12 6142 6019 518 256 24 0 chr11 20674632 20674757 -128108715 + MER94 DNA DNA 1 128 -6 317 338 127 14 chr11 20674843 20675242 -128108230 + L2 LINE L2 2600 3047 -225 207 281 122 12 chr11 20675587 20675669 -128107803 - MER91A DNA MER1_type -86 110 20 193 308 0 0 chr11 20675691 20675743 -128107729 + L2 LINE L2 3218 3269 -3 235 236 31 124 chr11 20676114 20676275 -128107197 - MLT1K LTR MaLR -21 567 422 466 302 182 33 chr11 20676579 20677076 -128106396 - L2 LINE L2 0 3313 2724 392 225 25 108 chr11 20677226 20677346 -128106126 - MER97b DNA MER1_type? -612 441 332 381 204 21 11 chr11 20677470 20677563 -128105909 - MIR SINE MIR -165 97 4 261 98 0 0 chr11 20677771 20677812 -128105660 + (CTA)n Simple_repeat Simple_repeat 3 43 0 318 203 40 0 chr11 20677828 20677902 -128105570 - MIR SINE MIR -16 246 170 1214 248 97 78 chr11 20678110 20678711 -128104761 - MLT1L LTR MaLR -2 613 2 1064 248 184 12 chr11 20678838 20679165 -128104307 + MLT1J2 LTR MaLR 6 388 -62 242 305 84 0 chr11 20679299 20679394 -128104078 - L3 LINE CR1 -50 1527 1425 357 283 5 109 chr11 20679434 20679618 -128103854 + MER117 DNA MER1_type 2 166 -31 396 298 30 23 chr11 20679823 20679954 -128103518 - MIR3 SINE MIR -65 143 12 585 206 7 75 chr11 20680015 20680130 -128103342 - MER20 DNA MER1_type -55 164 59 2623 93 13 21 chr11 20680130 20680508 -128102964 + THE1C LTR MaLR 1 375 0 585 206 7 75 chr11 20680508 20680538 -128102934 - MER20 DNA MER1_type -160 59 29 1855 157 10 10 chr11 20681041 20681334 -128102138 - AluJb SINE Alu -19 293 1 264 295 184 9 chr11 20685113 20685330 -128098142 + L2 LINE L2 2688 2942 -372 1247 240 113 32 chr11 20685400 20685924 -128097548 + L2 LINE L2 2518 3083 -230 21 36 0 0 chr11 20686264 20686292 -128097180 + AT_rich Low_complexity Low_complexity 1 28 0 359 247 52 41 chr11 20686424 20686608 -128096864 + MIR SINE MIR 14 193 -57 210 82 0 61 chr11 20686712 20686761 -128096711 + (TCC)n Simple_repeat Simple_repeat 3 48 0 959 157 60 74 chr11 20687014 20687230 -128096242 + MER20 DNA MER1_type 7 219 0 613 241 59 23 chr11 20687337 20687557 -128095915 - L1ME2 LINE L1 0 6164 5937 1224 206 159 61 chr11 20687917 20688164 -128095308 - MLT1D LTR MaLR 0 505 284 2393 97 7 0 chr11 20688164 20688474 -128094998 - AluSx SINE Alu 0 312 1 1224 206 159 61 chr11 20688474 20688686 -128094786 - MLT1D LTR MaLR -221 284 1 270 231 77 11 chr11 20688803 20688894 -128094578 - MIR SINE MIR -7 255 159 442 249 54 63 chr11 20688922 20689127 -128094345 - L1MC4 LINE L1 -4 8038 7836 279 372 16 8 chr11 20689158 20689287 -128094185 - MIR SINE MIR -113 149 20 544 206 27 68 chr11 20689604 20689750 -128093722 + HAL1 LINE L1 1667 1806 -701 269 216 95 0 chr11 20689829 20689903 -128093569 - MER31A LTR ERV1 -8 477 397 1216 180 111 41 chr11 20689922 20690084 -128093388 - MER31A LTR ERV1 -46 435 286 2251 180 41 5 chr11 20690084 20690495 -128092977 + MSTB LTR MaLR 1 426 0 1216 180 111 41 chr11 20690495 20690706 -128092766 - MER31A LTR ERV1 -195 286 1 1833 148 36 16 chr11 20690790 20691095 -128092377 + AluSx SINE Alu 2 312 0 511 251 38 67 chr11 20691097 20691200 -128092272 + HAL1 LINE L1 1973 2077 -430 2389 88 0 3 chr11 20691200 20691497 -128091975 + AluSx SINE Alu 1 296 -16 511 251 38 67 chr11 20691497 20691632 -128091840 + HAL1 LINE L1 2077 2204 -303 459 0 0 0 chr11 20691806 20691857 -128091615 + (TG)n Simple_repeat Simple_repeat 2 52 0 2102 120 17 7 chr11 20692051 20692352 -128091120 + AluSq SINE Alu 1 304 -9 404 333 50 64 chr11 20692489 20693149 -128090323 + L2 LINE L2 2584 3235 -37 21 0 0 0 chr11 20694567 20694588 -128088884 + AT_rich Low_complexity Low_complexity 1 21 0 2201 114 0 3 chr11 20695103 20695393 -128088079 + AluSx SINE Alu 1 289 -23 576 277 252 8 chr11 20695714 20696111 -128087361 + L2 LINE L2 2820 3313 0 260 250 68 68 chr11 20696129 20696229 -128087243 + MIR SINE MIR 111 213 -49 2096 101 10 23 chr11 20696229 20696535 -128086937 + AluY SINE Alu 1 302 -9 260 250 68 68 chr11 20696535 20696582 -128086890 + MIR SINE MIR 212 258 -4 876 227 126 70 chr11 20696710 20697053 -128086419 + MLT1G1 LTR MaLR 2 399 -156 2161 125 0 0 chr11 20697053 20697348 -128086124 - AluSx SINE Alu -17 295 1 876 227 126 70 chr11 20697348 20697515 -128085957 + MLT1G1 LTR MaLR 399 555 0 435 272 0 10 chr11 20697554 20697657 -128085815 - MIR SINE MIR -98 164 63 8302 101 46 17 chr11 20697954 20699008 -128084464 + MER41A-int LTR ERV1 4682 5777 -169 2357 109 0 3 chr11 20699008 20699321 -128084151 - AluSx SINE Alu 0 312 1 8302 101 46 17 chr11 20699321 20699494 -128083978 + MER41A-int LTR ERV1 5777 5944 -2 3964 112 4 7 chr11 20699494 20700050 -128083422 + MER41A LTR ERV1 1 554 0 2059 120 7 0 chr11 20700205 20700504 -128082968 - AluSx SINE Alu -11 301 1 695 226 87 84 chr11 20703040 20703106 -128080366 + L2 LINE L2 2040 2104 -1210 451 178 30 0 chr11 20703106 20703207 -128080265 - L1MA7 LINE L1 -1 6290 6187 695 226 87 84 chr11 20703207 20703415 -128080057 + L2 LINE L2 2104 2315 -999 992 287 128 24 chr11 20703453 20703913 -128079559 - L2 LINE L2 -416 2898 2391 309 146 36 0 chr11 20704476 20704531 -128078941 - L2 LINE L2 -5 3308 3252 1979 155 39 29 chr11 20704979 20705365 -128078107 + MLT1B LTR MaLR 1 390 0 764 215 41 6 chr11 20705381 20705553 -128077919 - MER5B DNA MER1_type 0 178 1 2362 103 0 0 chr11 20705972 20706273 -128077199 + AluSx SINE Alu 3 303 -9 182 212 293 30 chr11 20706275 20706374 -128077098 + L3 LINE CR1 1431 1555 -22 270 337 11 0 chr11 20706520 20706612 -128076860 + MIR3 SINE MIR 110 202 -6 232 192 19 0 chr11 20707473 20707525 -128075947 - MLT2C1 LTR ERVL -3 551 499 282 206 0 0 chr11 20707535 20707608 -128075864 + (TA)n Simple_repeat Simple_repeat 1 73 0 1717 153 27 67 chr11 20707608 20707980 -128075492 - MLT2C1 LTR ERVL -40 357 1 299 340 10 0 chr11 20708158 20708258 -128075214 - MIR3 SINE MIR -10 198 98 615 276 75 152 chr11 20708910 20710382 -128073090 + L2 LINE L2 1349 2707 -607 624 219 56 22 chr11 20710390 20710568 -128072904 - L1ME3A LINE L1 -11 6159 5976 456 285 53 93 chr11 20710615 20710968 -128072504 + L2 LINE L2 2686 3022 -250 606 134 67 0 chr11 20712318 20712452 -128071020 + (CATAC)n Simple_repeat Simple_repeat 1 143 0 493 234 97 97 chr11 20712562 20712601 -128070871 - MER97a DNA MER1_type? -657 237 199 2159 122 3 0 chr11 20712601 20712896 -128070576 - AluSg SINE Alu -14 296 1 493 234 97 97 chr11 20712896 20713083 -128070389 - MER97a DNA MER1_type? -694 200 11 232 279 41 57 chr11 20713113 20713235 -128070237 - L2 LINE L2 -1103 2211 2092 742 205 195 17 chr11 20714034 20714420 -128069052 + MLT1H LTR MaLR 57 549 0 572 260 64 59 chr11 20715600 20715819 -128067653 + MIR SINE MIR 43 262 0 40 0 0 0 chr11 20715829 20715869 -128067603 + AT_rich Low_complexity Low_complexity 1 40 0 365 245 99 7 chr11 20715989 20716118 -128067354 - MIR SINE MIR -66 142 19 1930 51 0 0 chr11 20716129 20716365 -128067107 - L1PA7 LINE L1 -6 6148 5913 338 370 54 27 chr11 20716473 20716657 -128066815 - MER5A DNA MER1_type 0 189 1 571 273 5 72 chr11 20716818 20717012 -128066460 - L2 LINE L2 -1 3312 3132 4505 194 30 16 chr11 20717024 20718962 -128064510 + L1MB4 LINE L1 4212 6178 -2 26 30 0 0 chr11 20719121 20719154 -128064318 + AT_rich Low_complexity Low_complexity 1 33 0 330 67 0 0 chr11 20719293 20719338 -128064134 + (CA)n Simple_repeat Simple_repeat 1 45 0 225 0 0 0 chr11 20719337 20719362 -128064110 + (TC)n Simple_repeat Simple_repeat 1 25 0 * 253 137 0 0 chr11 20719390 20719441 -128064031 - L1MA3 LINE L1 0 6305 6255 1990 100 40 31 chr11 20719442 20719793 -128063679 + L1MA2 LINE L1 5896 6249 -55 7132 242 17 43 chr11 20719810 20720461 -128063011 - L1 LINE L1 -1809 5756 5089 1878 126 54 0 chr11 20720461 20720738 -128062734 - AluSx SINE Alu -20 292 1 7132 242 17 43 chr11 20720738 20720895 -128062577 - L1 LINE L1 -2476 5089 4929 1902 174 0 0 chr11 20720895 20721199 -128062273 - AluJb SINE Alu -8 304 1 7132 242 17 43 chr11 20721199 20722525 -128060947 - L1 LINE L1 -2636 4929 3677 6680 117 42 2 chr11 20722549 20723656 -128059816 + L1PBa LINE L1 1058 2208 -4655 4201 32 0 0 chr11 20723656 20724150 -128059322 + L1PA5 LINE L1 5653 6146 -8 32 26 0 0 chr11 20724150 20724189 -128059283 + AT_rich Low_complexity Low_complexity 1 39 0 12041 167 50 9 chr11 20724206 20725341 -128058131 - L1 LINE L1 -5233 2332 1245 1942 153 18 24 chr11 20725341 20725680 -128057792 - MER1B DNA MER1_type 0 337 1 12041 167 50 9 chr11 20725680 20726767 -128056705 - L1 LINE L1 -6320 1245 19 2218 188 153 63 chr11 20726960 20727727 -128055745 - L1ME2 LINE L1 -9 6224 5389 2108 219 78 40 chr11 20727733 20728562 -128054910 - L1ME2 LINE L1 -874 5341 4481 1543 252 56 90 chr11 20728679 20729894 -128053578 - L1ME2 LINE L1 -4598 1798 625 1238 174 97 0 chr11 20729940 20730198 -128053274 + MER7A DNA MER2_type 66 346 0 304 363 17 20 chr11 20730283 20730578 -128052894 - L1ME2 LINE L1 -5867 529 236 579 274 25 6 chr11 20731021 20731178 -128052294 - MIR SINE MIR 0 262 103 345 310 0 0 chr11 20731270 20731357 -128052115 + MIR3 SINE MIR 81 167 -41 195 292 136 7 chr11 20731591 20731701 -128051771 + MIR SINE MIR 36 150 -65 1818 125 104 0 chr11 20732252 20732531 -128050941 + AluSg SINE Alu 1 308 -2 2208 104 14 0 chr11 20732753 20733041 -128050431 + AluSx SINE Alu 1 292 -20 25 0 0 0 chr11 20733041 20733066 -128050406 + AT_rich Low_complexity Low_complexity 1 25 0 313 273 69 24 chr11 20737343 20737466 -128046006 + MIR SINE MIR 19 145 -71 231 284 18 0 chr11 20737675 20737784 -128045688 + L1ME4a LINE L1 5995 6105 -16 605 218 13 26 chr11 20738940 20739096 -128044376 - MER103 DNA DNA -12 154 1 358 291 11 78 chr11 20739232 20739337 -128044135 + L3 LINE CR1 672 762 -815 1618 221 70 27 chr11 20739337 20739821 -128043651 - MLT1D LTR MaLR 0 505 1 358 291 11 78 chr11 20739821 20739894 -128043578 + L3 LINE CR1 762 838 -739 189 244 116 23 chr11 20739946 20740032 -128043440 - L2 LINE L2 0 3313 3220 904 220 4 70 chr11 20740178 20740350 -128043122 + MIR SINE MIR 50 205 -57 1700 126 112 4 chr11 20740350 20740619 -128042853 + AluSx SINE Alu 5 302 -10 904 220 4 70 chr11 20740619 20740673 -128042799 + MIR SINE MIR 205 261 -1 457 351 157 19 chr11 20740704 20741029 -128042443 + L3 LINE CR1 1119 1488 -89 195 42 0 0 chr11 20741153 20741177 -128042295 + (TGAA)n Simple_repeat Simple_repeat 2 25 0 209 347 71 25 chr11 20741509 20741748 -128041724 - L2 LINE L2 -339 2975 2726 982 163 98 20 chr11 20741975 20742178 -128041294 - MER20 DNA MER1_type 0 219 1 248 322 112 54 chr11 20743258 20743500 -128039972 + L2 LINE L2 3017 3272 0 293 288 131 42 chr11 20743546 20743732 -128039740 - L1ME4a LINE L1 -22 6099 5931 2144 125 0 0 chr11 20743732 20744027 -128039445 + AluSx SINE Alu 1 295 -17 293 288 131 42 chr11 20744027 20744315 -128039157 - L1ME4a LINE L1 -190 5931 5583 332 241 0 58 chr11 20744535 20744622 -128038850 - MIR SINE MIR -111 151 70 456 225 147 31 chr11 20744978 20745107 -128038365 - MIR3 SINE MIR -12 196 53 362 187 31 31 chr11 20745424 20745523 -128037949 - MER5A DNA MER1_type 0 178 80 34 24 0 0 chr11 20746443 20746484 -128036988 + AT_rich Low_complexity Low_complexity 1 41 0 307 339 33 25 chr11 20747731 20747852 -128035620 - L2 LINE L2 0 3272 3151 1537 242 75 71 chr11 20748210 20748773 -128034699 - MLT1G1 LTR MaLR -30 565 1 204 302 23 12 chr11 20749361 20749447 -128034025 + MIR SINE MIR 176 262 0 1926 146 10 0 chr11 20750288 20750589 -128032883 + AluJb SINE Alu 1 304 -8 612 147 39 32 chr11 20750591 20750747 -128032725 + L1M4 LINE L1 5642 5798 -386 2242 160 28 7 chr11 20750848 20751285 -128032187 + L1MB7 LINE L1 5728 6173 -11 722 180 193 12 chr11 20751341 20751585 -128031887 + LTR50 LTR ERVL 1 288 -507 408 275 80 14 chr11 20751615 20751898 -128031574 + LTR50 LTR ERVL 346 522 -1 244 0 0 0 chr11 20751972 20751999 -128031473 + (TTTG)n Simple_repeat Simple_repeat 2 120 0 2132 80 0 0 chr11 20751999 20752262 -128031210 - AluY SINE Alu -1 309 21 22 56 0 0 chr11 20752374 20752410 -128031062 + AT_rich Low_complexity Low_complexity 1 36 0 515 250 26 6 chr11 20752510 20752666 -128030806 - MER103 DNA DNA -3 163 5 296 277 19 39 chr11 20752859 20753014 -128030458 + L1M4 LINE L1 3886 4037 -2109 2100 166 7 48 chr11 20753183 20753538 -128029934 - L1MB5 LINE L1 -87 6087 5752 2072 129 14 3 chr11 20753538 20753832 -128029640 + AluSx SINE Alu 1 297 -15 2100 166 7 48 chr11 20753832 20753911 -128029561 - L1MB5 LINE L1 -422 5752 5671 302 246 104 52 chr11 20754024 20754158 -128029314 + L1ME4a LINE L1 5969 6109 -12 245 344 106 37 chr11 20754190 20754463 -128029009 - L2 LINE L2 -1490 1824 1533 367 123 0 15 chr11 20754669 20754734 -128028738 - LTR54 LTR ERV1 -4 506 443 946 218 36 26 chr11 20754746 20755085 -128028387 - MER57B LTR ERV1 -80 323 1 286 181 14 14 chr11 20755195 20755267 -128028205 + CT-rich Low_complexity Low_complexity 1 72 0 1887 115 42 0 chr11 20755267 20755528 -128027944 - AluSx SINE Alu -40 272 1 1078 282 93 19 chr11 20755889 20756364 -128027108 - MLT1J LTR MaLR 0 511 2 1698 189 3 13 chr11 20757513 20757815 -128025657 - AluJo SINE Alu -13 299 1 830 284 16 29 chr11 20758304 20758547 -128024925 - MIR SINE MIR -15 247 8 2051 232 78 36 chr11 20758734 20759403 -128024069 + MER20B DNA MER1_type 2 698 -85 304 269 62 48 chr11 20759980 20760125 -128023347 + L2 LINE L2 3167 3313 0 24 32 0 0 chr11 20760407 20760438 -128023034 + AT_rich Low_complexity Low_complexity 1 31 0 282 289 21 10 chr11 20760446 20760543 -128022929 - MIR SINE MIR -31 231 134 251 53 0 26 chr11 20760543 20760581 -128022891 + (TG)n Simple_repeat Simple_repeat 2 38 0 2148 84 4 4 chr11 20760596 20760871 -128022601 - AluSg SINE Alu -15 295 21 219 196 151 74 chr11 20760876 20760984 -128022488 - MIR SINE MIR -66 142 20 923 200 6 17 chr11 20762031 20762211 -128021261 + MER45A DNA AcHobo 1 178 0 273 242 50 40 chr11 20763116 20763215 -128020257 + MIR SINE MIR 53 152 -110 289 269 32 11 chr11 20765224 20765317 -128018155 - MIR SINE MIR -60 202 108 671 186 119 83 chr11 20766276 20766739 -128016733 - LTR48 LTR ERV1 -4 781 90 744 280 40 8 chr11 20766754 20767075 -128016397 + MER57B LTR ERV1 4 310 -93 1104 154 0 6 chr11 20767076 20767251 -128016221 - FAM SINE Alu -1 174 1 264 204 0 0 chr11 20767270 20767324 -128016148 + LTR54 LTR ERV1 427 480 -30 1405 161 16 4 chr11 20767329 20767577 -128015895 - MER57A LTR ERV1 0 403 153 671 174 60 27 chr11 20767577 20767726 -128015746 - MER57A-int LTR ERV1 -1559 5978 5825 286 136 0 0 chr11 20768053 20768097 -128015375 - MER57A-int LTR ERV1 -1716 5821 5778 4652 196 64 65 chr11 20768140 20768963 -128014509 - MER57A-int LTR ERV1 -1494 3442 2620 2200 145 0 3 chr11 20768963 20769274 -128014198 + AluSx SINE Alu 1 310 -2 4652 196 64 65 chr11 20769274 20770121 -128013351 - MER57A-int LTR ERV1 -2316 2620 1841 2023 125 11 11 chr11 20770121 20770408 -128013064 + AluSx SINE Alu 1 287 -25 4652 196 64 65 chr11 20770408 20770543 -128012929 - MER57A-int LTR ERV1 -3095 1841 1707 576 147 25 189 chr11 20770637 20770875 -128012597 - MER57A-int LTR ERV1 -2869 3462 3264 759 180 10 78 chr11 20770927 20771133 -128012339 - MER57A-int LTR ERV1 -3059 3272 3081 2276 194 11 59 chr11 20771186 20771744 -128011728 - MER57A-int LTR ERV1 -6873 664 134 1747 157 50 107 chr11 20771867 20772027 -128011445 - MER57A LTR ERV1 -4 399 231 2118 142 0 0 chr11 20772027 20772330 -128011142 + AluSx SINE Alu 1 303 -9 1747 157 50 107 chr11 20772330 20772590 -128010882 - MER57A LTR ERV1 -172 231 3 397 186 0 0 chr11 20772621 20772691 -128010781 - MER34C LTR ERV1 -510 75 6 2288 116 59 9 chr11 20773358 20774002 -128009470 - L1M1 LINE L1 -684 5621 4952 1353 227 23 17 chr11 20774052 20774405 -128009067 - MER4D LTR ERV1 0 903 549 1616 150 22 0 chr11 20774441 20774715 -128008757 - MER49 LTR ERV1 -643 280 1 264 209 22 99 chr11 20774772 20774863 -128008609 + MIR SINE MIR 108 191 -71 216 235 321 0 chr11 20775767 20775848 -128007624 - L2 LINE L2 -4 3309 3203 205 133 22 22 chr11 20776451 20776496 -128006976 + A-rich Low_complexity Low_complexity 3 47 0 478 196 43 22 chr11 20778462 20778554 -128004918 - AluJo SINE Alu -92 220 127 658 91 0 4 chr11 20778646 20778750 -128004722 - L1PA5 LINE L1 -198 5963 5863 22 0 0 0 chr11 20778762 20778784 -128004688 + AT_rich Low_complexity Low_complexity 1 22 0 1682 118 118 22 chr11 20779691 20779962 -128003510 + AluSq SINE Alu 1 297 -16 207 69 0 0 chr11 20780682 20780711 -128002761 + (CA)n Simple_repeat Simple_repeat 1 29 0 372 241 141 16 chr11 20780750 20780941 -128002531 - MER5C DNA MER1_type -5 319 105 513 240 40 8 chr11 20780945 20781070 -128002402 + FLAM_A SINE Alu 1 129 -4 2734 226 55 25 chr11 20781353 20782149 -128001323 - L1ME1 LINE L1 -33 6133 5314 417 310 117 23 chr11 20782456 20782891 -128000581 - L1ME4a LINE L1 -113 6008 5533 2262 123 0 0 chr11 20783202 20783502 -127999970 - AluSx SINE Alu -12 300 1 271 303 97 0 chr11 20783608 20783803 -127999669 - L1ME4a LINE L1 -1129 5017 4804 424 331 58 84 chr11 20783855 20784200 -127999272 - L1ME4a LINE L1 -1368 4778 4456 2192 115 10 3 chr11 20784200 20784504 -127998968 - AluSx SINE Alu -6 306 1 424 331 58 84 chr11 20784504 20784798 -127998674 - L1ME4a LINE L1 -1690 4456 4156 2395 81 3 0 chr11 20784974 20785271 -127998201 + AluSp SINE Alu 1 298 -15 21 36 0 0 chr11 20785293 20785321 -127998151 + AT_rich Low_complexity Low_complexity 1 28 0 3223 208 57 33 chr11 20785630 20787130 -127996342 - L1ME1 LINE L1 -5 6161 4639 53 69 0 0 chr11 20787145 20787247 -127996225 + AT_rich Low_complexity Low_complexity 1 102 0 4772 229 49 26 chr11 20787253 20788699 -127994773 - L1ME1 LINE L1 -1498 4648 3161 243 0 0 0 chr11 20788699 20788726 -127994746 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 4772 229 49 26 chr11 20788726 20788900 -127994572 - L1ME1 LINE L1 -2985 3161 2992 223 256 167 0 chr11 20788976 20789066 -127994406 - MER5C DNA MER1_type -219 105 1 2036 116 11 0 chr11 20789086 20789362 -127994110 + AluSx SINE Alu 1 279 -33 2033 162 0 0 chr11 20789721 20790029 -127993443 - AluJb SINE Alu -4 308 1 228 321 111 0 chr11 20790090 20790171 -127993301 - MIR SINE MIR -82 126 37 336 48 0 0 chr11 20790251 20790293 -127993179 + (TG)n Simple_repeat Simple_repeat 2 43 0 241 275 0 29 chr11 20791590 20791659 -127991813 - L2 LINE L2 0 3313 3247 236 250 54 36 chr11 20792621 20792733 -127990739 - MLT1J LTR MaLR -14 497 384 309 284 84 0 chr11 20792864 20792959 -127990513 - MLT1J LTR MaLR -339 172 70 410 292 130 7 chr11 20793260 20793414 -127990058 - MIR SINE MIR 0 262 90 275 322 11 0 chr11 20793889 20793976 -127989496 + CT-rich Low_complexity Low_complexity 1 88 0 621 254 98 5 chr11 20794331 20794524 -127988948 - MIR SINE MIR -32 230 20 299 280 73 7 chr11 20795004 20795138 -127988334 + MIR SINE MIR 9 136 -72 812 287 9 9 chr11 20795497 20795713 -127987759 - MIR SINE MIR -17 245 30 297 125 0 0 chr11 20795766 20795822 -127987650 + (T)n Simple_repeat Simple_repeat 1 56 0 838 209 46 98 chr11 20795822 20796217 -127987255 + MLT1H LTR MaLR 73 545 -10 218 301 58 10 chr11 20796233 20796336 -127987136 + MIR SINE MIR 70 177 -85 214 127 36 36 chr11 20796992 20797047 -127986425 + T-rich Low_complexity Low_complexity 2 56 0 613 198 107 113 chr11 20799121 20799439 -127984033 + MER46C DNA MER2_type 14 329 -9 353 345 108 0 chr11 20799655 20799794 -127983678 - MIR SINE MIR 0 262 109 1840 98 0 0 chr11 20800300 20800535 -127982937 + AluSc SINE Alu 71 305 -4 363 333 45 41 chr11 20800558 20800774 -127982698 - MIR SINE MIR -42 220 1 305 311 46 73 chr11 20800794 20800945 -127982527 - L2 LINE L2 -111 3161 3015 298 299 24 31 chr11 20800963 20801045 -127982427 - L2 LINE L2 -5 3308 3226 708 274 29 24 chr11 20801045 20801253 -127982219 + MER63A DNA MER1_type 2 210 0 298 299 24 31 chr11 20801253 20801297 -127982175 - L2 LINE L2 -87 3226 3183 5576 181 48 32 chr11 20801304 20801868 -127981604 + Charlie1a DNA MER1_type 55 608 -2153 2320 82 0 0 chr11 20801868 20802174 -127981298 - AluSg SINE Alu 0 306 1 5576 181 48 32 chr11 20802174 20802987 -127980485 + Charlie1a DNA MER1_type 608 1455 0 198 0 0 0 chr11 20803270 20803292 -127980180 + (ATCTG)n Simple_repeat Simple_repeat 1 22 0 2292 113 0 0 chr11 20803868 20804170 -127979302 + AluSx SINE Alu 1 302 -10 318 309 144 0 chr11 20804743 20804840 -127978632 + L2 LINE L2 3154 3264 -8 184 303 115 57 chr11 20804938 20805060 -127978412 - L2 LINE L2 -5 3308 3180 808 173 0 0 chr11 20805292 20805425 -127978047 + AluSq/x SINE Alu 1 133 -180 1770 183 0 3 chr11 20805430 20805725 -127977747 + AluJb SINE Alu 1 294 -18 32 0 0 0 chr11 20806447 20806479 -127976993 + AT_rich Low_complexity Low_complexity 1 32 0 329 91 0 0 chr11 20806481 20806525 -127976947 - MADE1 DNA Mariner -35 45 2 247 305 9 19 chr11 20807314 20807419 -127976053 - MIR SINE MIR -82 180 77 27 29 0 0 chr11 20807809 20807843 -127975629 + AT_rich Low_complexity Low_complexity 1 34 0 292 299 39 7 chr11 20808054 20808237 -127975235 + L1ME LINE L1 5323 5480 -682 296 310 55 35 chr11 20808304 20808449 -127975023 - MIR3 SINE MIR 0 208 61 196 191 43 21 chr11 20808956 20809003 -127974469 - MIR SINE MIR -57 205 158 405 0 0 0 chr11 20809160 20809205 -127974267 + (TG)n Simple_repeat Simple_repeat 1 45 0 457 343 78 8 chr11 20810105 20810350 -127973122 + L1MDa LINE L1 59 320 -6220 1262 190 36 0 chr11 20810488 20810709 -127972763 + AluJo SINE Alu 1 229 -83 221 0 35 0 chr11 20810710 20810739 -127972733 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 1905 156 17 0 chr11 20810757 20811045 -127972427 - AluSq SINE Alu -17 296 4 803 126 25 6 chr11 20811093 20811252 -127972220 + GA-rich Low_complexity Low_complexity 1 162 0 886 79 39 0 chr11 20811315 20811442 -127972030 - MER65A LTR ERV1 0 445 314 1797 129 79 0 chr11 20811443 20811721 -127971751 - AluSx SINE Alu -11 301 2 6595 41 1 23 chr11 20811744 20812233 -127971239 - L1PA7 LINE L1 0 6154 5656 229 0 54 27 chr11 20812233 20812270 -127971202 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 2110 100 0 4 chr11 20812275 20812554 -127970918 - AluSg SINE Alu -27 283 6 6595 41 1 23 chr11 20812554 20812880 -127970592 - L1PA7 LINE L1 -502 5652 5351 1995 122 41 16 chr11 20812880 20813199 -127970273 - MER65A LTR ERV1 -118 327 1 2223 100 6 6 chr11 20814116 20814427 -127969045 + L1PA8A LINE L1 5794 6104 -27 195 42 0 0 chr11 20814432 20814456 -127969016 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 2187 188 97 77 chr11 20814459 20815280 -127968192 + MER31-int LTR ERV1 930 2414 -2457 491 255 7 7 chr11 20815309 20815454 -127968018 + MER31-int LTR ERV1 1679 1823 -3113 197 274 0 0 chr11 20815843 20815894 -127967578 + L2 LINE L2 3263 3313 0 25 0 0 0 chr11 20816309 20816334 -127967138 + AT_rich Low_complexity Low_complexity 1 25 0 403 331 56 7 chr11 20816402 20816590 -127966882 + MIR SINE MIR 9 202 -60 1680 185 6 13 chr11 20816607 20816921 -127966551 + AluJb SINE Alu 1 312 0 308 274 19 15 chr11 20816938 20817057 -127966415 - MLT1L LTR MaLR 0 615 472 500 218 0 35 chr11 20819351 20819525 -127963947 + CT-rich Low_complexity Low_complexity 3 170 0 3632 143 58 16 chr11 20820235 20820859 -127962613 - MER39B LTR ERV1 0 653 4 2446 86 0 0 chr11 20821194 20821497 -127961975 - AluY SINE Alu -8 303 1 227 234 65 26 chr11 20821846 20821923 -127961549 - MER5A DNA MER1_type 0 189 110 259 237 70 60 chr11 20821994 20822203 -127961269 + MLT1K LTR MaLR 369 611 -4 189 259 17 17 chr11 20822244 20822302 -127961170 - MIR SINE MIR -82 180 123 1953 99 0 0 chr11 20822509 20822762 -127960710 - AluSx SINE Alu -59 253 1 630 231 20 27 chr11 20822763 20822910 -127960562 - MIR SINE MIR -102 160 15 221 226 38 0 chr11 20824403 20824456 -127959016 + MIR3 SINE MIR 151 205 -3 1913 157 7 0 chr11 20825699 20825993 -127957479 + AluSx SINE Alu 1 296 -16 786 135 0 0 chr11 20826527 20826631 -127956841 + AluY SINE Alu 2 105 -206 1930 115 0 0 chr11 20826633 20826894 -127956578 + AluY SINE Alu 37 297 -14 671 105 0 0 chr11 20827074 20827160 -127956312 - AluS SINE Alu -226 87 2 1544 111 5 0 chr11 20828784 20828991 -127954481 + AluY SINE Alu 1 208 -103 330 196 21 41 chr11 20829057 20829154 -127954318 - L1M4 LINE L1 -3643 2503 2409 333 92 92 103 chr11 20830441 20830528 -127952944 + LTR49-int LTR ERV1 1457 1542 -4789 276 211 18 18 chr11 20830530 20830587 -127952885 + MER67B LTR ERV1 146 202 -459 2849 175 74 55 chr11 20830589 20831173 -127952299 + MER31-int LTR ERV1 292 864 -4072 706 200 9 0 chr11 20831173 20831288 -127952184 + FLAM_A SINE Alu 1 116 -17 222 91 0 0 chr11 20831292 20831325 -127952147 + (CA)n Simple_repeat Simple_repeat 2 34 0 2849 175 74 55 chr11 20831325 20831442 -127952030 + MER31-int LTR ERV1 866 928 -4008 22652 142 20 19 chr11 20831449 20835398 -127948074 + L1P3 LINE L1 2 4025 -2436 195 42 0 0 chr11 20835398 20835422 -127948050 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 22652 142 20 19 chr11 20835422 20836446 -127947026 + L1P3 LINE L1 4025 5046 -1415 427 270 109 35 chr11 20837085 20837259 -127946213 - MIR SINE MIR -56 206 20 2271 119 0 3 chr11 20837403 20837714 -127945758 + AluSx SINE Alu 1 310 -2 181 189 27 0 chr11 20837801 20837838 -127945634 + L3 LINE CR1 1537 1574 -3 21 36 0 0 chr11 20838657 20838685 -127944787 + AT_rich Low_complexity Low_complexity 1 28 0 351 305 161 6 chr11 20839659 20839833 -127943639 - MIR SINE MIR -44 218 18 913 232 63 56 chr11 20840066 20840480 -127942992 + L1MC5 LINE L1 7501 7917 -44 428 288 12 44 chr11 20841519 20841679 -127941793 - MIR SINE MIR -73 189 35 470 245 135 12 chr11 20842059 20842222 -127941250 - L2 LINE L2 0 3313 3131 413 271 98 94 chr11 20842420 20842623 -127940849 + MIR SINE MIR 48 251 -11 1105 233 134 65 chr11 20842845 20843170 -127940302 + MER34 LTR ERV1 15 387 -155 1956 128 3 42 chr11 20843170 20843483 -127939989 + AluSx SINE Alu 1 301 -11 1105 233 134 65 chr11 20843483 20843651 -127939821 + MER34 LTR ERV1 387 542 0 1113 79 7 0 chr11 20843795 20843935 -127939537 - AluSp SINE Alu -122 191 51 2259 116 0 0 chr11 20844472 20844775 -127938697 - AluSx SINE Alu -9 303 1 325 219 49 37 chr11 20844851 20844933 -127938539 + L2 LINE L2 3231 3313 0 612 213 63 116 chr11 20845974 20846242 -127937230 + MIR SINE MIR 9 262 0 289 314 31 78 chr11 20846550 20846741 -127936731 + MER5A DNA MER1_type 8 189 0 195 100 0 0 chr11 20847119 20847149 -127936323 + (A)n Simple_repeat Simple_repeat 1 30 0 1590 204 30 50 chr11 20847192 20847588 -127935884 + MLT1B LTR MaLR 3 390 0 46 33 0 0 chr11 20848584 20848644 -127934828 + AT_rich Low_complexity Low_complexity 1 60 0 2108 126 0 3 chr11 20848647 20848940 -127934532 - AluSx SINE Alu -20 292 1 2497 162 27 11 chr11 20848960 20849399 -127934073 - L1MB8 LINE L1 -70 6108 5663 2653 43 0 0 chr11 20849405 20849706 -127933766 - AluY SINE Alu -10 301 1 2889 193 58 4 chr11 20849750 20850283 -127933189 + MER68 LTR ERV1 1 562 0 253 338 59 0 chr11 20850940 20851008 -127932464 + MIR SINE MIR 12 83 -179 1894 147 7 0 chr11 20851009 20851342 -127932130 - AluSx SINE Alu 0 335 1 1362 191 29 22 chr11 20851762 20852035 -127931437 + MER31-int LTR ERV1 3986 4260 -676 288 225 150 12 chr11 20852035 20852115 -127931357 + LTR37A LTR ERV1 4 94 -332 587 202 54 0 chr11 20852115 20852244 -127931228 + MER31-int LTR ERV1 4334 4469 -467 569 228 78 36 chr11 20852273 20852440 -127931032 + MER34 LTR ERV1 369 542 0 333 340 47 35 chr11 20852467 20852699 -127930773 - MLT1K LTR MaLR -285 303 69 29 47 0 0 chr11 20852806 20852849 -127930623 + AT_rich Low_complexity Low_complexity 1 43 0 552 288 0 0 chr11 20852911 20853029 -127930443 - L2 LINE L2 -8 3305 3188 375 255 166 19 chr11 20853537 20853694 -127929778 - MIR SINE MIR -17 245 66 225 282 64 0 chr11 20853700 20853778 -127929694 + MIR3 SINE MIR 125 207 -1 1564 203 3 19 chr11 20853827 20854143 -127929329 + AluJb SINE Alu 1 311 -1 907 78 9 0 chr11 20854151 20854266 -127929206 + AluSq/x SINE Alu 18 133 -179 2030 107 21 4 chr11 20854269 20854549 -127928923 + AluSx SINE Alu 1 285 -27 663 223 122 5 chr11 20854588 20854776 -127928696 - MIR SINE MIR -41 221 12 245 164 0 18 chr11 20855617 20855672 -127927800 + CT-rich Low_complexity Low_complexity 5 58 0 24 0 0 0 chr11 20856205 20856229 -127927243 + AT_rich Low_complexity Low_complexity 1 24 0 1061 76 8 0 chr11 20856229 20856360 -127927112 + AluSq/x SINE Alu 1 132 -180 253 325 172 7 chr11 20856532 20856683 -127926789 + MER5B DNA MER1_type 1 176 -2 293 353 75 29 chr11 20856730 20856903 -127926569 - MIR SINE MIR -62 200 20 2602 105 21 16 chr11 20857171 20857544 -127925928 - THE1C LTR MaLR 0 375 1 1324 229 168 20 chr11 20857549 20857989 -127925483 + MLT1D LTR MaLR 1 505 0 296 278 56 0 chr11 20858497 20858587 -127924885 - L2 LINE L2 -17 3296 3202 285 238 48 12 chr11 20858629 20858713 -127924759 - MIR SINE MIR -162 100 14 1570 266 61 18 chr11 20858719 20859211 -127924261 - LTR33 LTR ERVL 0 521 9 1264 179 95 8 chr11 20859211 20859473 -127923999 + AluJb SINE Alu 21 305 -7 232 231 47 77 chr11 20859485 20859719 -127923753 + MER113 DNA MER1_type? 1 227 -294 21 0 0 0 chr11 20860390 20860411 -127923061 + AT_rich Low_complexity Low_complexity 1 21 0 277 322 122 17 chr11 20860716 20860831 -127922641 + LTR33 LTR ERVL 32 158 -363 212 276 8 0 chr11 20861318 20861395 -127922077 - MIR SINE MIR -63 145 67 210 327 0 0 chr11 20861779 20861831 -127921641 + L2 LINE L2 3211 3262 -10 626 219 118 105 chr11 20861855 20862231 -127921241 - MLT1J LTR MaLR -3 468 123 2328 42 38 3 chr11 20862233 20862572 -127920900 + MER11A LTR ERVK 1 445 -821 24 0 0 0 chr11 20862572 20862596 -127920876 + AT_rich Low_complexity Low_complexity 1 24 0 315 253 58 11 chr11 20862596 20862683 -127920789 - L1MC4 LINE L1 -1339 6703 6613 434 152 56 0 chr11 20862684 20862809 -127920663 + (TA)n Simple_repeat Simple_repeat 1 132 0 1847 187 29 40 chr11 20862841 20863052 -127920420 + L1ME2 LINE L1 5643 5855 -309 572 169 104 122 chr11 20863052 20863331 -127920141 - ORSL DNA AcHobo 0 275 2 1847 187 29 40 chr11 20863331 20863568 -127919904 + L1ME2 LINE L1 5855 6086 -78 641 336 168 20 chr11 20863811 20864401 -127919071 + L3 LINE CR1 864 1540 -37 1484 137 164 8 chr11 20864616 20864878 -127918594 + AluSg SINE Alu 1 303 -7 21 0 0 0 chr11 20865197 20865218 -127918254 + AT_rich Low_complexity Low_complexity 1 21 0 260 241 0 0 chr11 20865865 20865923 -127917549 + Charlie7 DNA MER1_type 2458 2515 -97 232 255 133 20 chr11 20865988 20866086 -127917386 + L2 LINE L2 3204 3312 -1 2093 117 11 0 chr11 20866428 20866709 -127916763 - AluSx SINE Alu -28 284 1 25 0 0 0 chr11 20866711 20866736 -127916736 + AT_rich Low_complexity Low_complexity 1 25 0 299 302 145 0 chr11 20866792 20866951 -127916521 - MIR3 SINE MIR -11 197 16 516 156 80 13 chr11 20867013 20867118 -127916354 + MLT1D LTR MaLR 1 91 -414 1675 178 78 24 chr11 20867322 20867692 -127915780 + MLT1D LTR MaLR 116 505 0 599 196 108 13 chr11 20867726 20867884 -127915588 - L1ME3A LINE L1 0 6170 5998 735 155 52 0 chr11 20869757 20869873 -127913599 + FLAM_A SINE Alu 1 122 -11 1787 123 9 93 chr11 20870263 20870587 -127912885 + AluJb SINE Alu 1 297 -15 1364 184 55 52 chr11 20870802 20871050 -127912422 - MER58B DNA MER1_type -2079 341 90 2563 55 0 0 chr11 20871050 20871341 -127912131 + AluY SINE Alu 1 291 -20 1364 184 55 52 chr11 20871341 20871401 -127912071 - MER58B DNA MER1_type -2330 90 32 299 308 0 11 chr11 20871882 20871973 -127911499 - MER5A DNA MER1_type -22 167 78 1722 154 50 85 chr11 20872142 20872544 -127910928 + MLT1B LTR MaLR 3 390 0 274 336 0 27 chr11 20874949 20875059 -127908413 + MIR SINE MIR 47 153 -109 184 314 144 20 chr11 20875068 20875221 -127908251 + MER5A DNA MER1_type 14 185 -4 2324 72 0 14 chr11 20875387 20875677 -127907795 + AluY SINE Alu 26 311 0 2347 88 0 16 chr11 20876190 20876496 -127906976 + AluSx SINE Alu 1 301 -11 246 62 0 0 chr11 20878122 20878154 -127905318 + (CA)n Simple_repeat Simple_repeat 2 33 0 281 229 0 0 chr11 20879089 20879159 -127904313 - L1ME2 LINE L1 0 6164 6095 423 0 0 0 chr11 20929188 20929235 -127854237 + (TA)n Simple_repeat Simple_repeat 2 48 0 329 151 0 0 chr11 20929235 20929288 -127854184 - Tigger1 DNA MER2_type -2365 53 1 1291 182 70 22 chr11 20929288 20929601 -127853871 + MLT1A1 LTR MaLR 38 365 0 1802 245 99 6 chr11 20929605 20930140 -127853332 + L2 LINE L2 2033 2617 -697 917 193 36 5 chr11 20930186 20930378 -127853094 + Charlie1a DNA MER1_type 30 227 -1228 1143 108 0 0 chr11 20930378 20930554 -127852918 - AluSp SINE Alu 0 310 135 692 208 15 8 chr11 20930600 20930750 -127852722 + FLAM_A SINE Alu 1 151 0 2395 106 0 0 chr11 20930756 20931068 -127852404 + AluSx SINE Alu 1 312 0 2574 188 98 19 chr11 20931073 20931907 -127851565 + Charlie1a DNA MER1_type 282 1236 -219 1163 176 21 47 chr11 20931907 20932140 -127851332 + AluJb SINE Alu 1 227 -85 513 301 78 30 chr11 20932514 20932913 -127850559 + L1ME LINE L1 5366 5783 -379 937 176 18 12 chr11 20932956 20933126 -127850346 + AluJo SINE Alu 112 282 -30 229 123 62 92 chr11 20934514 20934579 -127848893 + L1ME2 LINE L1 653 715 -5681 649 270 205 37 chr11 20934642 20935155 -127848317 + L1ME2 LINE L1 874 1299 -5097 2012 151 0 3 chr11 20935155 20935454 -127848018 + AluSx SINE Alu 1 298 -14 649 270 205 37 chr11 20935454 20936028 -127847444 + L1ME2 LINE L1 1299 2144 -4252 1171 253 58 27 chr11 20936163 20936777 -127846695 + L1ME2 LINE L1 5555 6224 -9 300 300 61 61 chr11 20937102 20937282 -127846190 - MIR SINE MIR -73 189 10 2173 116 0 3 chr11 20938321 20938615 -127844857 + AluSx SINE Alu 1 293 -19 24 53 0 0 chr11 20938681 20938719 -127844753 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr11 20938790 20938812 -127844660 + AT_rich Low_complexity Low_complexity 1 22 0 972 129 139 21 chr11 20939612 20939806 -127843666 + Tigger1 DNA MER2_type 2202 2418 0 668 206 100 0 chr11 20939851 20940011 -127843461 - L2 LINE L2 -1307 2007 1832 1679 188 47 43 chr11 20940011 20940243 -127843229 + L1ME2 LINE L1 5679 5909 -255 1401 176 23 106 chr11 20940243 20940426 -127843046 + MLT1A1 LTR MaLR 1 135 -230 1623 140 3 81 chr11 20940426 20940748 -127842724 - AluJo SINE Alu -15 297 1 1401 176 23 106 chr11 20940748 20940962 -127842510 + MLT1A1 LTR MaLR 135 365 0 1679 188 47 43 chr11 20940962 20941197 -127842275 + L1ME2 LINE L1 5909 6148 -16 503 226 200 5 chr11 20941200 20941395 -127842077 - L2 LINE L2 -1482 1832 1600 886 223 196 12 chr11 20941404 20941750 -127841722 - L2 LINE L2 -2296 1018 609 385 226 0 0 chr11 20941752 20941836 -127841636 + L1ME2 LINE L1 6063 6146 -18 580 298 77 26 chr11 20941860 20942209 -127841263 - L2 LINE L2 -2695 619 253 307 274 69 20 chr11 20942209 20942311 -127841161 - L2 LINE L2 -3180 134 28 2092 63 0 0 chr11 20942845 20943113 -127840359 - L1PA5 LINE L1 0 6154 5887 1843 154 0 3 chr11 20943543 20943835 -127839637 + AluJb SINE Alu 1 291 -21 2246 98 3 0 chr11 20944273 20944569 -127838903 - AluSq SINE Alu -16 297 1 1020 215 18 9 chr11 20944689 20944908 -127838564 - MER58A DNA MER1_type 0 224 4 433 145 15 99 chr11 20946057 20946125 -127837347 + Charlie1a DNA MER1_type 1335 1388 -1373 2129 95 7 20 chr11 20946125 20946429 -127837043 - AluSx SINE Alu -12 300 1 433 145 15 99 chr11 20946429 20946491 -127836981 + Charlie1a DNA MER1_type 1388 1454 -1 981 254 152 22 chr11 20946493 20947133 -127836339 + L2 LINE L2 2606 3313 0 2108 138 0 3 chr11 20947771 20948083 -127835389 + AluSx SINE Alu 1 311 -1 25 0 0 0 chr11 20949117 20949142 -127834330 + AT_rich Low_complexity Low_complexity 1 25 0 2068 116 0 3 chr11 20949417 20949728 -127833744 - AluY SINE Alu 0 310 1 240 325 9 44 chr11 20950022 20950136 -127833336 - MER5A DNA MER1_type -35 154 45 1394 236 20 61 chr11 20950269 20950709 -127832763 + MER63B DNA MER1_type 7 428 -8 1958 148 30 0 chr11 20951025 20951328 -127832144 - AluJo SINE Alu 0 312 1 1028 241 27 31 chr11 20951381 20951638 -127831834 + MIR SINE MIR 7 262 0 300 326 20 0 chr11 20952263 20952361 -127831111 + L1ME LINE L1 5322 5421 -2387 2175 126 0 40 chr11 20952397 20952723 -127830749 + AluSq SINE Alu 1 313 0 317 345 198 0 chr11 20952792 20952969 -127830503 + L1ME LINE L1 5490 5701 -420 555 103 0 0 chr11 20953020 20953121 -127830351 - Alu SINE Alu 0 306 206 620 111 0 0 chr11 20953124 20953214 -127830258 + AluJ/FRAM SINE Alu 218 307 -5 302 179 18 0 chr11 20953259 20953315 -127830157 - L2 LINE L2 0 3272 3216 1493 117 5 5 chr11 20953346 20953552 -127829920 - AluSx SINE Alu -105 207 2 422 277 68 68 chr11 20953607 20953827 -127829645 + MLT1H LTR MaLR 101 320 -229 309 26 0 0 chr11 20953860 20953898 -127829574 + (CA)n Simple_repeat Simple_repeat 2 39 0 344 135 14 0 chr11 20953898 20953972 -127829500 + (TA)n Simple_repeat Simple_repeat 2 76 0 271 242 0 0 chr11 20953978 20954040 -127829432 + MLT1H LTR MaLR 506 567 0 381 304 83 4 chr11 20954348 20954658 -127828814 + LTR33A LTR ERVL 147 506 -17 2048 147 34 9 chr11 20954671 20954997 -127828475 - MER1B DNA MER1_type 0 339 6 21 57 0 0 chr11 20956109 20956144 -127827328 + AT_rich Low_complexity Low_complexity 1 35 0 948 177 50 5 chr11 20956160 20956358 -127827114 - L1MA9 LINE L1 -38 7295 7089 853 138 53 13 chr11 20956845 20956997 -127826475 + MIR SINE MIR 90 247 -15 10414 159 54 32 chr11 20957973 20958611 -127824861 - L1MA9 LINE L1 -505 6816 6194 5669 104 21 24 chr11 20958611 20959168 -127824304 - L1PA14 LINE L1 -12 6149 5592 1969 161 3 0 chr11 20959168 20959473 -127823999 - AluSx SINE Alu -6 306 1 5669 104 21 24 chr11 20959473 20960581 -127822891 - L1PA14 LINE L1 -569 5592 4507 10414 159 54 32 chr11 20960581 20960788 -127822684 - L1MA9 LINE L1 -1127 6194 5993 1500 177 0 0 chr11 20960788 20961031 -127822441 - AluJb SINE Alu -45 267 25 10414 159 54 32 chr11 20961031 20961093 -127822379 - L1MA9 LINE L1 -1328 5993 5934 180 0 0 0 chr11 20961093 20961113 -127822359 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 10414 159 54 32 chr11 20961113 20962929 -127820543 - L1MA9 LINE L1 -1387 5934 4038 8851 169 89 50 chr11 20962916 20963141 -127820331 - L1MA9 LINE L1 -5194 1974 1759 * 2533 57 0 0 chr11 20963141 20963442 -127820030 - AluY SINE Alu -10 301 1 8851 169 89 50 chr11 20963442 20965116 -127818356 - L1MA9 LINE L1 -5409 1759 1 325 282 106 28 chr11 20965201 20965735 -127817737 + L1M4 LINE L1 4496 5095 -1051 823 174 7 14 chr11 20965771 20965915 -127817557 + FRAM SINE Alu 9 151 -25 1102 53 0 8 chr11 20965917 20966050 -127817422 + AluY SINE Alu 1 132 -179 229 214 12 12 chr11 20966058 20966142 -127817330 + L1M4 LINE L1 5118 5201 -945 23 92 0 0 chr11 20966226 20966291 -127817181 + AT_rich Low_complexity Low_complexity 1 65 0 184 270 0 0 chr11 20966292 20966329 -127817143 - L2 LINE L2 -15 3257 3221 746 222 18 0 chr11 20966356 20966523 -127816949 - L1M4 LINE L1 -887 5259 5090 319 268 188 0 chr11 20966680 20966792 -127816680 - L1MC4a LINE L1 -990 6818 6686 2398 49 0 7 chr11 20966818 20967153 -127816319 - AluY SINE Alu 0 333 1 2243 112 0 0 chr11 20967335 20967639 -127815833 - AluSq SINE Alu -9 304 1 427 254 16 8 chr11 20968064 20968186 -127815286 - L1MC4a LINE L1 -1881 5927 5805 303 221 189 0 chr11 20968332 20968454 -127815018 - L1MC4a LINE L1 -2054 5754 5610 489 162 0 0 chr11 20968461 20968535 -127814937 + AluJ/FLAM SINE Alu 1 74 -238 414 223 46 54 chr11 20968572 20968702 -127814770 - L1MC4a LINE L1 -2215 5593 5465 365 141 141 0 chr11 20969839 20969910 -127813562 - L2 LINE L2 0 3313 3233 232 159 0 23 chr11 20969924 20969968 -127813504 - L1MC/D LINE L1 -1890 5918 5876 1950 253 134 4 chr11 20969972 20970703 -127812769 - L1MC4a LINE L1 -3138 3008 2183 618 233 67 137 chr11 20971075 20971672 -127811800 - L1ME3A LINE L1 -7 6163 5609 463 270 53 7 chr11 20972144 20972296 -127811176 + L1ME LINE L1 5524 5682 -439 718 181 42 122 chr11 20972779 20973017 -127810455 + MER20 DNA MER1_type 1 219 0 834 289 52 7 chr11 20975347 20975634 -127807838 - L2 LINE L2 0 3313 3014 22 0 0 0 chr11 20975742 20975764 -127807708 + AT_rich Low_complexity Low_complexity 1 22 0 474 288 25 6 chr11 20976860 20977020 -127806452 + MER103 DNA DNA 1 163 -3 1082 167 27 41 chr11 20977108 20977329 -127806143 - MER20 DNA MER1_type -1 218 1 1837 111 60 57 chr11 20978744 20979042 -127804430 + AluSx SINE Alu 1 299 -13 1044 184 39 26 chr11 20979295 20979528 -127803944 - MER46A DNA MER2_type 0 236 1 208 348 11 0 chr11 20979562 20979651 -127803821 - MIR SINE MIR -12 250 161 219 298 70 0 chr11 20980586 20980643 -127802829 - MIR SINE MIR -5 257 197 228 372 18 9 chr11 20980672 20980898 -127802574 + HAL1b LINE L1 684 911 -437 391 277 10 0 chr11 20980993 20981094 -127802378 + L1ME1 LINE L1 6055 6156 -10 309 354 165 15 chr11 20981217 20981672 -127801800 + L1M4 LINE L1 4711 5233 -913 325 233 83 25 chr11 20981722 20981842 -127801630 + L1M LINE L1 5292 5418 -2390 1355 208 116 61 chr11 20981845 20982416 -127801056 - L1M4 LINE L1 -1052 5094 4493 1458 140 8 8 chr11 20982420 20982656 -127800816 - AluSg SINE Alu -11 299 64 321 240 150 142 chr11 20982899 20983145 -127800327 + MIR SINE MIR 9 256 -6 972 230 9 31 chr11 20984517 20984743 -127798729 - MER58A DNA MER1_type 0 224 4 279 254 28 28 chr11 20984842 20984913 -127798559 - MER91C DNA MER1_type -28 112 42 772 206 83 17 chr11 20984980 20985160 -127798312 + MER58A DNA MER1_type 33 224 0 762 328 119 49 chr11 20986006 20987068 -127796404 + L2 LINE L2 2096 3270 -2 1872 78 4 8 chr11 20988434 20988677 -127794795 - AluSc SINE Alu -36 273 32 189 94 0 0 chr11 20989925 20989957 -127793515 + (TTTTTG)n Simple_repeat Simple_repeat 2 33 0 220 270 81 101 chr11 20990536 20990684 -127792788 + MIR SINE MIR 6 150 -112 30 69 0 0 chr11 20990759 20990817 -127792655 + AT_rich Low_complexity Low_complexity 1 58 0 26 0 0 0 chr11 20990900 20990926 -127792546 + AT_rich Low_complexity Low_complexity 1 26 0 306 333 33 0 chr11 20991691 20991811 -127791661 - LTR67 LTR ERVL -2 555 432 258 284 63 0 chr11 20992025 20992120 -127791352 - LTR67 LTR ERVL -357 200 100 441 282 65 0 chr11 20992799 20992923 -127790549 - MIR SINE MIR -7 255 124 1833 149 11 7 chr11 20993905 20994210 -127789262 - AluSx SINE Alu 0 306 1 918 163 153 24 chr11 20995086 20995295 -127788177 - MER46A DNA MER2_type 0 236 1 1525 173 53 0 chr11 20995518 20995784 -127787688 - Tigger3(Golem) DNA MER2_type 0 3038 69 13525 142 44 31 chr11 20995784 20999169 -127784303 - L1PA11 LINE L1 -3 7609 4173 2068 217 99 50 chr11 20999169 21000254 -127783218 - L1PA11 LINE L1 -4873 2711 188 3794 123 41 12 chr11 21000254 21000841 -127782631 - LTR10E LTR ERV1 -29 604 1 898 244 0 0 chr11 21000841 21001034 -127782438 - L1PA11 LINE L1 -7386 195 3 486 125 56 0 chr11 21001036 21001108 -127782364 - Tigger3(Golem) DNA MER2_type -2952 77 2 1939 108 0 70 chr11 21001200 21001514 -127781958 - AluSx SINE Alu -12 300 9 1216 122 11 21 chr11 21001648 21001837 -127781635 + AluSq SINE Alu 107 293 -20 518 285 165 13 chr11 21002100 21002409 -127781063 - L1ME LINE L1 -5094 976 621 504 180 199 73 chr11 21002560 21002766 -127780706 - MER110A LTR ERV1 -4 464 233 1802 132 73 0 chr11 21002770 21003042 -127780430 + AluSx SINE Alu 1 292 -20 602 127 27 36 chr11 21003917 21004027 -127779445 + FRAM SINE Alu 55 163 -13 204 292 73 52 chr11 21004734 21004830 -127778642 - L2 LINE L2 -1 3271 3174 303 201 34 87 chr11 21004918 21005067 -127778405 + L1MC5 LINE L1 7629 7769 -192 672 242 165 16 chr11 21005256 21005504 -127777968 + L1ME3A LINE L1 5591 5875 -295 412 195 171 0 chr11 21005521 21005603 -127777869 + AluJ/FLAM SINE Alu 1 96 -216 641 275 17 11 chr11 21005609 21005787 -127777685 + L1ME3A LINE L1 5968 6146 -24 521 344 123 40 chr11 21006019 21006449 -127777023 - L2 LINE L2 -575 2739 2274 279 401 88 6 chr11 21009085 21009267 -127774205 - L2 LINE L2 -5 3267 3071 252 336 91 60 chr11 21009634 21009899 -127773573 - L2 LINE L2 -42 3230 2958 1826 115 71 22 chr11 21009899 21010221 -127773251 + THE1B LTR MaLR 1 338 -26 259 290 90 0 chr11 21010654 21010754 -127772718 + L1MEd LINE L1 607 715 -5490 264 250 24 68 chr11 21011086 21011320 -127772152 + L1MEd LINE L1 1074 1345 -4910 2045 144 153 9 chr11 21011369 21011826 -127771646 + L1MB8 LINE L1 5639 6161 -17 322 257 40 0 chr11 21011971 21012072 -127771400 - L1ME3A LINE L1 -64 6106 6002 264 267 36 93 chr11 21012198 21012274 -127771198 + L1MEd LINE L1 1570 1649 -4747 2112 147 0 0 chr11 21012274 21012580 -127770892 + AluSx SINE Alu 1 306 -6 264 267 36 93 chr11 21012580 21012750 -127770722 + L1MEd LINE L1 1649 1802 -4594 822 203 155 19 chr11 21012857 21013167 -127770305 + L1ME3A LINE L1 5799 6150 -20 663 190 0 16 chr11 21015302 21015423 -127768049 + FLAM_A SINE Alu 11 129 -13 320 125 0 0 chr11 21015991 21016039 -127767433 + Alu SINE Alu 1 48 -254 256 208 101 43 chr11 21016326 21016466 -127767006 - L1ME LINE L1 -4516 1564 1395 1061 240 144 21 chr11 21016469 21017135 -127766337 - L1ME LINE L1 -4983 1097 386 300 325 35 18 chr11 21017225 21017394 -127766078 - L1ME LINE L1 -5578 492 321 193 352 110 0 chr11 21017510 21017601 -127765871 - L2 LINE L2 -5 3308 3208 376 247 0 32 chr11 21017670 21017763 -127765709 - L2 LINE L2 -3 3269 3180 1328 126 0 0 chr11 21018276 21018451 -127765021 + AluSg SINE Alu 1 175 -135 1312 101 101 0 chr11 21018455 21018644 -127764828 + AluSg/x SINE Alu 88 295 -17 265 303 61 42 chr11 21018866 21019031 -127764441 - MLT1H LTR MaLR 0 549 382 1897 115 50 4 chr11 21019846 21020125 -127763347 - AluSx SINE Alu -20 292 1 411 137 27 14 chr11 21020447 21020520 -127762952 + AluJ/FLAM SINE Alu 1 74 -238 1668 91 59 0 chr11 21020527 21020746 -127762726 - AluSq SINE Alu -12 301 70 1010 185 44 36 chr11 21020848 21021097 -127762375 + AluJo SINE Alu 42 292 -20 503 170 100 75 chr11 21021110 21021310 -127762162 + L1MEc LINE L1 2166 2370 -4026 1871 227 71 24 chr11 21021573 21022247 -127761225 + L1M4 LINE L1 4342 5047 -1099 201 391 94 5 chr11 21022407 21022599 -127760873 + L2 LINE L2 2812 3020 -252 2307 211 102 30 chr11 21024829 21025620 -127757852 - L1ME1 LINE L1 -16 6150 5303 1807 238 115 18 chr11 21025653 21026143 -127757329 - L1ME1 LINE L1 -1192 4954 4513 234 0 0 0 chr11 21026143 21026169 -127757303 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 534 16 0 0 chr11 21026168 21026231 -127757241 + (GA)n Simple_repeat Simple_repeat 1 63 0 1807 238 115 18 chr11 21026169 21026232 -127757240 - L1ME1 LINE L1 -1633 4513 4458 1820 158 4 0 chr11 21026232 21026511 -127756961 - AluSx SINE Alu -32 280 1 1807 238 115 18 chr11 21026511 21026782 -127756690 - L1ME1 LINE L1 -1688 4458 4117 788 262 74 9 chr11 21027457 21027686 -127755786 + MIR SINE MIR 8 251 -11 263 313 104 0 chr11 21028729 21028863 -127754609 + L2 LINE L2 3146 3293 -20 2037 112 10 17 chr11 21028971 21029265 -127754207 + AluSx SINE Alu 1 292 -20 2014 99 4 0 chr11 21029302 21029564 -127753908 + AluSx SINE Alu 1 263 -49 609 105 0 0 chr11 21029565 21029651 -127753821 + AluSg/x SINE Alu 218 303 -6 39 88 0 0 chr11 21030724 21030826 -127752646 + AT_rich Low_complexity Low_complexity 1 102 0 1576 185 36 21 chr11 21030831 21031112 -127752360 + AluJo SINE Alu 5 289 -23 1516 171 70 0 chr11 21031138 21031395 -127752077 + AluJo SINE Alu 1 275 -37 405 252 50 16 chr11 21031616 21031792 -127751680 + MIR SINE MIR 8 238 -24 306 281 9 44 chr11 21032369 21032483 -127750989 + HAL1b LINE L1 1232 1341 -7 498 275 127 51 chr11 21032659 21032765 -127750707 - MIR SINE MIR 0 262 166 2165 120 0 0 chr11 21032765 21033069 -127750403 - AluSx SINE Alu 0 304 1 498 275 127 51 chr11 21033069 21033197 -127750275 - MIR SINE MIR -96 166 9 189 305 96 51 chr11 21033314 21033491 -127749981 + MIR SINE MIR 2 186 -76 1552 210 35 3 chr11 21033745 21034031 -127749441 + AluJb SINE Alu 1 295 -17 257 232 18 0 chr11 21034076 21034132 -127749340 - L2 LINE L2 0 3313 3257 893 195 17 0 chr11 21034402 21034576 -127748896 - MER5A DNA MER1_type 0 189 13 372 303 81 78 chr11 21035195 21035654 -127747818 - L1ME4a LINE L1 -96 6025 5566 311 330 25 20 chr11 21035672 21035875 -127747597 - L1ME4a LINE L1 -2290 5518 5315 478 92 0 6 chr11 21035993 21036254 -127747218 + AluSx SINE Alu 1 312 0 288 293 13 115 chr11 21036394 21036551 -127746921 - MIR3 SINE MIR -35 173 33 399 296 128 11 chr11 21036743 21036922 -127746550 + MIR SINE MIR 63 262 0 2160 148 0 0 chr11 21037385 21037696 -127745776 - AluSx SINE Alu -1 311 1 2279 117 43 6 chr11 21038223 21038574 -127744898 - THE1B LTR MaLR 0 364 1 226 333 39 39 chr11 21038943 21039045 -127744427 + L2 LINE L2 2983 3084 -188 221 330 91 0 chr11 21039131 21039219 -127744253 + L2 LINE L2 3177 3272 0 407 295 90 0 chr11 21039344 21039466 -127744006 + L2 LINE L2 3181 3313 0 976 264 133 18 chr11 21039940 21040391 -127743081 - MLT1J LTR MaLR -8 503 1 564 197 7 61 chr11 21040501 21040648 -127742824 + MIR SINE MIR 120 258 -4 307 281 111 42 chr11 21040648 21040954 -127742518 - L1MC4a LINE L1 -1906 5902 5576 248 300 0 67 chr11 21040989 21041079 -127742393 - L2 LINE L2 -3 3269 3186 684 271 108 0 chr11 21041324 21041527 -127741945 + MIR SINE MIR 15 239 -23 4788 74 11 11 chr11 21041582 21041783 -127741689 - L1PA10 LINE L1 0 6168 5968 5961 86 193 34 chr11 21041783 21042875 -127740597 + MER11A LTR ERVK 1 1266 0 4788 74 11 11 chr11 21042875 21043324 -127740148 - L1PA10 LINE L1 -199 5969 5518 203 315 42 21 chr11 21043704 21043847 -127739625 - L2 LINE L2 -351 2963 2818 524 337 31 10 chr11 21044087 21044283 -127739189 - MIR SINE MIR -3 259 60 583 295 12 18 chr11 21045269 21045451 -127738021 + MIR SINE MIR 35 215 -47 198 0 0 0 chr11 21045478 21045500 -127737972 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 229 319 29 0 chr11 21045667 21045736 -127737736 + MIR SINE MIR 66 136 -126 1046 188 25 46 chr11 21045752 21046023 -127737449 + L1MB8 LINE L1 5018 5293 -885 2268 96 0 0 chr11 21046023 21046346 -127737126 + AluSx SINE Alu 1 323 0 1046 188 25 46 chr11 21046346 21046450 -127737022 + L1MB8 LINE L1 5293 5398 -780 1929 129 18 7 chr11 21046450 21046729 -127736743 + AluSx SINE Alu 1 282 -30 189 0 0 0 chr11 21046734 21046755 -127736717 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1046 188 25 46 chr11 21046755 21047438 -127736034 + L1MB8 LINE L1 5402 6143 -35 392 200 267 33 chr11 21047672 21047882 -127735590 - MIR SINE MIR -2 260 2 369 300 17 41 chr11 21049130 21049367 -127734105 + CT-rich Low_complexity Low_complexity 1 231 0 196 272 29 19 chr11 21050476 21050579 -127732893 + MIR3 SINE MIR 101 204 -4 803 221 43 24 chr11 21050870 21051123 -127732349 - MER20B DNA MER1_type -23 760 503 234 284 19 37 chr11 21051371 21051533 -127731939 + (CATATA)n Simple_repeat Simple_repeat 2 160 0 1891 219 24 50 chr11 21051787 21052368 -127731104 + L1ME1 LINE L1 5615 6183 -1 1205 272 14 22 chr11 21052377 21052734 -127730738 - MER20B DNA MER1_type -429 354 1 346 291 51 0 chr11 21052748 21052865 -127730607 - MIR3 SINE MIR -72 136 14 184 194 0 0 chr11 21053457 21053493 -127729979 + L2 LINE L2 3231 3266 -6 566 251 120 6 chr11 21053769 21053936 -127729536 + MIR SINE MIR 8 193 -69 1514 207 7 27 chr11 21054196 21054491 -127728981 + AluJb SINE Alu 1 289 -23 677 132 16 36 chr11 21054904 21055153 -127728319 + CT-rich Low_complexity Low_complexity 1 244 0 1609 194 3 0 chr11 21055153 21055436 -127728036 - AluJo SINE Alu -28 284 1 335 333 17 0 chr11 21055454 21055571 -127727901 - L2 LINE L2 -4 3268 3150 324 70 0 0 chr11 21055822 21055865 -127727607 + (TCCC)n Simple_repeat Simple_repeat 4 46 0 2178 109 67 17 chr11 21056149 21056506 -127726966 - THE1C LTR MaLR 0 375 1 10566 110 48 3 chr11 21056506 21058018 -127725454 - THE1C-int LTR MaLR 0 1580 1 2785 83 16 8 chr11 21058018 21058390 -127725082 - THE1C LTR MaLR 0 375 1 24 0 0 0 chr11 21058627 21058651 -127724821 + AT_rich Low_complexity Low_complexity 1 24 0 413 298 57 98 chr11 21058810 21058936 -127724536 + MIR SINE MIR 28 141 -121 2015 133 13 0 chr11 21058936 21059238 -127724234 + AluJb SINE Alu 1 306 -6 413 298 57 98 chr11 21059238 21059356 -127724116 + MIR SINE MIR 141 262 0 2093 122 3 10 chr11 21059551 21059863 -127723609 - AluSx SINE Alu -2 310 1 493 295 68 0 chr11 21060844 21060990 -127722482 + MIR SINE MIR 38 192 -60 260 225 163 0 chr11 21061084 21061164 -127722308 + HAL1 LINE L1 4 96 -2411 926 28 0 0 chr11 21061172 21061279 -127722193 + L1PA8 LINE L1 6063 6169 -3 902 247 127 32 chr11 21061382 21061698 -127721774 - MLT1H LTR MaLR -1 548 203 918 316 55 8 chr11 21061921 21062288 -127721184 + HAL1 LINE L1 163 546 -1961 1402 195 150 77 chr11 21062295 21062854 -127720618 + HAL1 LINE L1 1169 1768 -739 1303 188 171 22 chr11 21062854 21063216 -127720256 + LTR50 LTR ERVL 1 416 -379 310 321 48 12 chr11 21063276 21063360 -127720112 + HAL1 LINE L1 1763 1849 -658 1694 249 95 37 chr11 21063360 21063877 -127719595 + MLT1H LTR MaLR 3 549 0 1093 254 117 41 chr11 21063877 21064392 -127719080 + HAL1 LINE L1 1845 2398 -109 370 179 0 0 chr11 21064436 21064523 -127718949 - AluJ/FRAM SINE Alu 0 314 228 1499 148 115 0 chr11 21064617 21064895 -127718577 + AluJb SINE Alu 1 310 -2 577 330 77 42 chr11 21065062 21065569 -127717903 + L2 LINE L2 2487 3011 -261 404 267 27 13 chr11 21065858 21066001 -127717471 + MLT1L LTR MaLR 369 615 0 862 259 45 0 chr11 21066114 21066361 -127717111 + MIR SINE MIR 5 262 0 299 309 111 32 chr11 21066396 21066522 -127716950 + L2 LINE L2 3177 3312 -1 183 205 0 0 chr11 21067011 21067050 -127716422 + CT-rich Low_complexity Low_complexity 2 40 0 387 183 0 56 chr11 21067636 21067707 -127715765 + AluJb SINE Alu 1 67 -235 1807 122 8 8 chr11 21067708 21067971 -127715501 + MLT2A2 LTR ERVL 50 312 -141 1356 184 0 8 chr11 21068091 21068341 -127715131 + AluJb SINE Alu 65 312 0 614 271 98 21 chr11 21068434 21068670 -127714802 - MIR SINE MIR 0 262 9 246 250 0 19 chr11 21069002 21069054 -127714418 - MIR3 SINE MIR -21 187 137 432 228 0 0 chr11 21069126 21069218 -127714254 - MLT1I LTR MaLR 0 409 318 514 46 0 0 chr11 21069223 21069288 -127714184 - MLT2A2 LTR ERVL 0 453 389 2035 126 84 62 chr11 21069288 21069726 -127713746 + LTR7 LTR ERV1 1 448 -2 16959 99 14 21 chr11 21069729 21072622 -127710850 + HERVH LTR ERV1 2 2995 -4718 992 120 7 0 chr11 21072601 21072751 -127710721 + HERVH LTR ERV1 3140 3290 -4423 * 3079 104 0 7 chr11 21072741 21073181 -127710291 + HERVH LTR ERV1 3492 3928 -3785 422 143 63 0 chr11 21073187 21073250 -127710222 + HERVH LTR ERV1 5753 5819 -1894 2463 95 45 13 chr11 21073250 21073628 -127709844 + HERVH LTR ERV1 7324 7713 0 2052 132 75 55 chr11 21073628 21074067 -127709405 + LTR7 LTR ERV1 1 448 -2 739 178 42 2 chr11 21074069 21074230 -127709242 - MLT2A2 LTR ERVL -54 500 293 2121 111 6 19 chr11 21074325 21074640 -127708832 - MLT2A2 LTR ERVL -142 311 1 619 330 22 9 chr11 21074645 21074872 -127708600 - MLT1I LTR MaLR -95 314 85 258 263 129 14 chr11 21074980 21075132 -127708340 - L1ME4a LINE L1 -2 6119 5935 2011 120 3 7 chr11 21075132 21075440 -127708032 - AluSx SINE Alu -3 309 3 258 263 129 14 chr11 21075440 21075496 -127707976 - L1ME4a LINE L1 -186 5935 5887 2109 64 7 11 chr11 21075677 21075957 -127707515 + AluY SINE Alu 1 279 -32 332 198 0 10 chr11 21076357 21076458 -127707014 + GA-rich Low_complexity Low_complexity 2 101 0 22862 42 8 9 chr11 21076773 21080336 -127703136 + L1PA5 LINE L1 2574 6151 -3 3122 167 2 33 chr11 21080987 21081318 -127702154 - MLT2B1 LTR ERVL 0 520 208 2025 113 3 0 chr11 21081318 21081641 -127701831 - AluSp SINE Alu 0 324 1 3122 167 2 33 chr11 21081641 21081822 -127701650 - MLT2B1 LTR ERVL -312 208 23 597 188 0 10 chr11 21081822 21081918 -127701554 + AluJo SINE Alu 125 219 -93 476 292 30 24 chr11 21083137 21083305 -127700167 + MLT1K LTR MaLR 1 169 -419 1420 209 82 47 chr11 21083826 21083910 -127699562 + MLT1D LTR MaLR 113 193 -312 1853 135 60 0 chr11 21083910 21084191 -127699281 + AluSg SINE Alu 1 298 -12 1420 209 82 47 chr11 21084191 21084470 -127699002 + MLT1D LTR MaLR 193 489 -16 246 253 103 0 chr11 21084515 21084602 -127698870 + MIR SINE MIR 167 262 0 1887 164 19 82 chr11 21084792 21085208 -127698264 - MLT1B LTR MaLR 0 390 1 202 260 87 58 chr11 21085465 21085569 -127697903 + MIR SINE MIR 35 141 -121 873 284 185 9 chr11 21085975 21086401 -127697071 - MLT1J LTR MaLR -2 509 9 2281 94 0 3 chr11 21086471 21086780 -127696692 - AluY SINE Alu -3 308 1 358 263 17 59 chr11 21086970 21087088 -127696384 - MIR SINE MIR -65 197 85 1881 140 0 0 chr11 21087556 21087835 -127695637 + AluJb SINE Alu 1 279 -33 192 97 0 0 chr11 21087835 21087866 -127695606 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 2247 92 3 0 chr11 21088023 21088317 -127695155 + AluSp SINE Alu 1 295 -18 208 265 0 186 chr11 21088360 21088575 -127694897 - MIR SINE MIR -14 248 74 207 0 0 0 chr11 21088617 21088640 -127694832 + (T)n Simple_repeat Simple_repeat 1 23 0 2419 137 19 82 chr11 21088802 21088897 -127694575 - Tigger2 DNA MER2_type 0 2718 2619 1702 163 33 0 chr11 21088897 21089197 -127694275 - AluJb SINE Alu -2 310 1 2419 137 19 82 chr11 21089197 21089577 -127693895 - Tigger2 DNA MER2_type -99 2619 2273 2373 79 0 0 chr11 21089588 21089893 -127693579 - AluSg1 SINE Alu -4 305 1 430 173 136 0 chr11 21089893 21089974 -127693498 + MER8 DNA MER2_type 148 239 0 779 301 101 30 chr11 21090545 21090911 -127692561 + LTR16C LTR ERVL 68 459 -32 375 139 124 93 chr11 21091090 21091219 -127692253 + MLT1K LTR MaLR 448 580 -8 302 310 35 56 chr11 21092082 21092224 -127691248 + L1ME4a LINE L1 5579 5717 -404 887 183 0 33 chr11 21092227 21092407 -127691065 + FRAM SINE Alu 1 166 -10 457 268 128 26 chr11 21092407 21092758 -127690714 + L1ME4a LINE L1 5730 6116 -5 532 258 108 11 chr11 21092954 21093140 -127690332 + MER3 DNA MER1_type 1 204 -5 257 317 118 21 chr11 21093171 21093357 -127690115 - L2 LINE L2 -172 3100 2897 2441 53 0 0 chr11 21093450 21093751 -127689721 + AluY SINE Alu 1 301 -10 230 294 83 89 chr11 21093955 21094135 -127689337 - MIR SINE MIR -34 228 50 23 54 0 0 chr11 21095504 21095541 -127687931 + AT_rich Low_complexity Low_complexity 1 37 0 252 122 0 0 chr11 21095704 21095745 -127687727 + (CA)n Simple_repeat Simple_repeat 2 42 0 319 228 134 31 chr11 21095792 21095919 -127687553 - L1ME4a LINE L1 -187 5934 5795 307 233 103 0 chr11 21095970 21096085 -127687387 - L1ME4a LINE L1 -459 5662 5593 230 326 42 56 chr11 21096120 21096264 -127687208 + MIR3 SINE MIR 67 208 0 347 235 208 95 chr11 21096847 21096961 -127686511 - MIR SINE MIR 0 262 162 2135 93 10 0 chr11 21096961 21097252 -127686220 - AluY SINE Alu -17 294 1 347 235 208 95 chr11 21097252 21097358 -127686114 - MIR SINE MIR -100 162 17 210 71 0 0 chr11 21098199 21098227 -127685245 + (TTC)n Simple_repeat Simple_repeat 2 29 0 219 338 113 0 chr11 21099342 21099475 -127683997 + MIR SINE MIR 109 256 -6 777 22 0 0 chr11 21101737 21101828 -127681644 + (GAA)n Simple_repeat Simple_repeat 2 92 0 646 260 35 0 chr11 21103584 21103753 -127679719 + MER69A DNA AcHobo 3 177 0 262 258 8 61 chr11 21103865 21103997 -127679475 + CT-rich Low_complexity Low_complexity 2 126 0 204 97 0 0 chr11 21104107 21104138 -127679334 + (CA)n Simple_repeat Simple_repeat 1 31 0 601 287 25 6 chr11 21104822 21104979 -127678493 - MIR3 SINE MIR -3 205 46 231 248 177 35 chr11 21107743 21107856 -127675616 - L2 LINE L2 -182 3090 2962 271 233 41 41 chr11 21109111 21109184 -127674288 - L2 LINE L2 0 3313 3241 250 275 75 17 chr11 21109260 21109380 -127674092 - MER5A DNA MER1_type -9 180 54 * 253 256 93 23 chr11 21109295 21109381 -127674091 + MER5A DNA MER1_type 56 147 -42 193 302 364 0 chr11 21109400 21109529 -127673943 + MER5A DNA MER1_type 8 183 -6 313 276 58 52 chr11 21109771 21109960 -127673512 + MIR SINE MIR 6 193 -67 408 67 0 0 chr11 21110314 21110374 -127673098 + (TC)n Simple_repeat Simple_repeat 1 60 0 297 0 0 0 chr11 21110374 21110407 -127673065 + (TG)n Simple_repeat Simple_repeat 2 34 0 26 0 0 0 chr11 21110686 21110712 -127672760 + AT_rich Low_complexity Low_complexity 1 26 0 929 139 85 18 chr11 21112170 21112335 -127671137 + MER20 DNA MER1_type 2 177 -42 2678 111 93 47 chr11 21112336 21112596 -127670876 + LTR26B LTR ERV1 1 292 -239 1818 156 7 0 chr11 21112596 21112897 -127670575 + AluSx SINE Alu 9 311 -1 2678 111 93 47 chr11 21112897 21113086 -127670386 + LTR26B LTR ERV1 292 471 -60 451 195 0 35 chr11 21113360 21113447 -127670025 + LTR26B LTR ERV1 447 530 -1 296 253 11 53 chr11 21113682 21113777 -127669695 - MIR SINE MIR -4 258 168 1665 179 0 7 chr11 21113938 21114235 -127669237 - AluJo SINE Alu -17 295 1 296 186 9 177 chr11 21114378 21114491 -127668981 + MER102b DNA MER1_type 248 341 0 837 221 11 11 chr11 21114560 21114741 -127668731 + MIR SINE MIR 82 262 0 405 198 86 0 chr11 21114869 21114985 -127668487 + MIR SINE MIR 118 243 -19 1071 158 0 6 chr11 21115065 21115242 -127668230 - FRAM SINE Alu -3 173 1 1043 173 11 22 chr11 21115243 21115428 -127668044 - MER20 DNA MER1_type -34 185 3 747 264 68 10 chr11 21115658 21115872 -127667600 + MIR SINE MIR 37 260 -2 2215 100 3 0 chr11 21116772 21117082 -127666390 - AluY SINE Alu 0 311 1 734 222 78 99 chr11 21117166 21117500 -127665972 - MER102a DNA MER1_type 0 330 4 180 200 0 0 chr11 21119113 21119158 -127664314 + CT-rich Low_complexity Low_complexity 2 46 0 233 280 243 9 chr11 21119360 21119467 -127664005 + MIR3 SINE MIR 15 146 -62 * 391 216 62 21 chr11 21119436 21119533 -127663939 + MIR SINE MIR 113 213 -49 1785 137 0 14 chr11 21120070 21120354 -127663118 + AluSx SINE Alu 1 280 -32 315 0 0 0 chr11 21120361 21120396 -127663076 + (CA)n Simple_repeat Simple_repeat 2 36 0 361 190 89 13 chr11 21121097 21121176 -127662296 + MIR3 SINE MIR 119 203 -5 304 221 53 71 chr11 21121182 21121295 -127662177 + MIR3 SINE MIR 77 187 -21 718 242 105 5 chr11 21121694 21121884 -127661588 + MIR SINE MIR 29 237 -25 528 288 204 5 chr11 21122006 21122197 -127661275 - MIR SINE MIR -14 248 20 2005 129 0 19 chr11 21122200 21122518 -127660954 - AluSx SINE Alu 0 312 1 375 279 88 15 chr11 21122641 21122777 -127660695 + MIR3 SINE MIR 38 183 -25 211 254 55 55 chr11 21123163 21123273 -127660199 - L3b LINE CR1 -230 1353 1244 762 130 91 45 chr11 21123727 21123881 -127659591 + MER96 DNA MER1_type? 15 175 0 227 299 85 43 chr11 21123908 21124072 -127659400 + MIR SINE MIR 1 171 -91 1254 258 142 18 chr11 21124708 21125507 -127657965 + L2 LINE L2 2396 3300 -13 194 0 39 0 chr11 21125554 21125580 -127657892 + (TA)n Simple_repeat Simple_repeat 2 28 0 1982 118 7 0 chr11 21125580 21125867 -127657605 - AluSx SINE Alu -23 289 1 451 198 45 152 chr11 21126292 21126535 -127656937 - MIR SINE MIR -33 229 13 2191 112 0 0 chr11 21126674 21126977 -127656495 - AluSq SINE Alu -10 303 1 335 155 0 17 chr11 21127388 21127446 -127656026 + L2 LINE L2 3254 3310 -3 702 287 30 26 chr11 21127447 21127677 -127655795 - MIR SINE MIR -12 250 20 1245 110 4 114 chr11 21129825 21130070 -127653402 - MLT1B LTR MaLR -170 220 3 342 326 141 7 chr11 21130199 21130334 -127653138 + MIR3 SINE MIR 9 161 -47 380 306 141 0 chr11 21130337 21130507 -127652965 - MIR SINE MIR -12 250 57 291 149 21 0 chr11 21130840 21130887 -127652585 - MLT1A1 LTR MaLR 0 374 327 1439 129 4 0 chr11 21130918 21131143 -127652329 - L1MA5 LINE L1 -2 6298 6073 1805 99 62 34 chr11 21131146 21131438 -127652034 - AluSq SINE Alu -13 300 1 496 118 25 0 chr11 21131441 21131533 -127651939 - L1MA5A LINE L1 -189 6108 6021 1522 183 49 23 chr11 21131536 21131842 -127651630 - MLT1A1 LTR MaLR -51 314 1 775 257 54 54 chr11 21135082 21135285 -127648187 - MIR SINE MIR 0 262 57 2063 99 0 10 chr11 21135285 21135588 -127647884 - AluSg SINE Alu -10 300 1 775 257 54 54 chr11 21135588 21135645 -127647827 - MIR SINE MIR -204 58 2 725 316 32 16 chr11 21136554 21136801 -127646671 - MIR SINE MIR 0 262 12 790 100 93 27 chr11 21136940 21137090 -127646382 + L1PA10 LINE L1 6008 6167 -1 1059 168 0 56 chr11 21137132 21137364 -127646108 - MER20 DNA MER1_type 0 219 1 1041 187 0 0 chr11 21138988 21139159 -127644313 + FAM SINE Alu 5 175 0 324 215 66 116 chr11 21139324 21139445 -127644027 + MIR3 SINE MIR 81 168 -40 24 0 0 0 chr11 21143377 21143401 -127640071 + AT_rich Low_complexity Low_complexity 1 24 0 465 317 7 0 chr11 21143489 21143631 -127639841 - MER45A DNA AcHobo 0 178 36 407 324 54 9 chr11 21144922 21145086 -127638386 - MIR3 SINE MIR -27 181 3 2953 146 45 9 chr11 21145484 21146127 -127637345 - L1MA7 LINE L1 -11 6280 5509 403 165 141 12 chr11 21146126 21146211 -127637261 - L1ME3A LINE L1 -38 6132 6037 * 2127 121 0 3 chr11 21146217 21146531 -127636941 - AluSq SINE Alu 0 313 1 2127 100 10 0 chr11 21147054 21147353 -127636119 - AluY SINE Alu -9 302 1 403 321 0 0 chr11 21148485 21148591 -127634881 - MIR SINE MIR -63 145 40 252 77 0 0 chr11 21148630 21148669 -127634803 + (TA)n Simple_repeat Simple_repeat 2 40 0 456 211 28 28 chr11 21148734 21148914 -127634558 + (TA)n Simple_repeat Simple_repeat 1 180 0 813 313 19 8 chr11 21148989 21149245 -127634227 - MIR SINE MIR 0 262 4 182 178 44 0 chr11 21149700 21149745 -127633727 + CT-rich Low_complexity Low_complexity 2 48 0 393 299 92 37 chr11 21150222 21150439 -127633033 - MIR SINE MIR 0 262 34 2665 16 0 0 chr11 21152069 21152372 -127631100 - AluY SINE Alu -8 303 1 325 154 13 13 chr11 21152600 21152678 -127630794 + C-rich Low_complexity Low_complexity 3 80 0 1657 155 7 7 chr11 21152690 21152980 -127630492 - AluSx SINE Alu -22 290 1 2210 111 7 0 chr11 21153033 21153340 -127630132 + AluSx SINE Alu 1 309 -3 506 252 13 45 chr11 21154635 21154790 -127628682 + MER5A DNA MER1_type 1 150 -39 279 0 0 0 chr11 21161708 21161739 -127621733 + (TG)n Simple_repeat Simple_repeat 2 32 0 607 239 18 39 chr11 21161744 21161963 -127621509 - L1MC4 LINE L1 0 8042 7713 316 297 70 8 chr11 21162661 21162789 -127620683 + MLT1J LTR MaLR 4 139 -372 450 262 47 47 chr11 21162866 21163057 -127620415 + MLT1H LTR MaLR 95 285 -264 527 282 85 38 chr11 21163286 21163587 -127619885 + MLT1J LTR MaLR 133 511 0 563 225 191 0 chr11 21163957 21164130 -127619342 + MIR SINE MIR 46 251 -11 643 222 232 0 chr11 21164747 21164932 -127618540 - MLT1C LTR MaLR 0 505 278 2014 138 3 3 chr11 21164942 21165240 -127618232 - AluSx SINE Alu -12 300 3 2149 147 90 21 chr11 21165242 21165629 -127617843 - MSTC LTR MaLR -14 414 1 912 181 63 19 chr11 21165638 21165843 -127617629 - MLT1C LTR MaLR -220 247 34 1113 260 137 34 chr11 21166321 21167213 -127616259 - L2 LINE L2 0 3313 2334 4083 183 69 22 chr11 21167248 21168219 -127615253 - L1MB8 LINE L1 -16 6162 5144 748 263 35 13 chr11 21168235 21168463 -127615009 - L2 LINE L2 -1007 2307 2075 9274 38 0 4 chr11 21170420 21172205 -127611267 - L1PA4 LINE L1 -90 6065 4288 * 28571 46 5 3 chr11 21172198 21176504 -127606968 + L1PA5 LINE L1 1835 6151 -3 3051 169 2 35 chr11 21177155 21177486 -127605986 - MLT2B1 LTR ERVL 0 520 209 2126 113 3 0 chr11 21177486 21177809 -127605663 - AluSp SINE Alu 0 324 1 3051 169 2 35 chr11 21177809 21177991 -127605481 - MLT2B1 LTR ERVL -311 209 23 632 188 0 10 chr11 21177991 21178087 -127605385 + AluJo SINE Alu 125 219 -93 473 292 30 24 chr11 21179306 21179474 -127603998 + MLT1K LTR MaLR 1 169 -419 1409 209 82 47 chr11 21179995 21180079 -127603393 + MLT1D LTR MaLR 113 193 -312 1942 136 61 0 chr11 21180079 21180359 -127603113 + AluSg SINE Alu 1 297 -13 1409 209 82 47 chr11 21180359 21180638 -127602834 + MLT1D LTR MaLR 193 489 -16 235 253 103 0 chr11 21180683 21180770 -127602702 + MIR SINE MIR 167 262 0 2013 164 19 82 chr11 21180960 21181376 -127602096 - MLT1B LTR MaLR 0 390 1 198 298 77 48 chr11 21181633 21181737 -127601735 + MIR SINE MIR 35 141 -121 870 282 185 9 chr11 21182143 21182569 -127600903 - MLT1J LTR MaLR -2 509 9 2385 87 0 10 chr11 21182639 21182948 -127600524 - AluY SINE Alu -5 306 1 345 263 17 59 chr11 21183138 21183256 -127600216 - MIR SINE MIR -65 197 85 1977 140 0 0 chr11 21183724 21184003 -127599469 + AluJb SINE Alu 1 279 -33 192 97 0 0 chr11 21184003 21184034 -127599438 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 2361 92 3 0 chr11 21184191 21184485 -127598987 + AluSp SINE Alu 1 295 -18 199 295 35 157 chr11 21184528 21184789 -127598683 - MIR SINE MIR -14 248 20 22 0 0 0 chr11 21184789 21184811 -127598661 + AT_rich Low_complexity Low_complexity 1 22 0 180 111 0 0 chr11 21185270 21185297 -127598175 + (AGGTG)n Simple_repeat Simple_repeat 1 27 0 215 292 111 103 chr11 21186219 21186579 -127596893 - L2 LINE L2 -1 3271 2909 2350 95 3 10 chr11 21187442 21187746 -127595726 - AluSp SINE Alu -11 302 1 326 320 16 8 chr11 21189139 21189264 -127594208 - MIR SINE MIR -85 177 52 380 250 116 0 chr11 21189507 21189619 -127593853 - MLT1A1 LTR MaLR -19 530 406 495 281 20 7 chr11 21189774 21189927 -127593545 - MLT1H LTR MaLR -387 162 8 238 288 72 36 chr11 21190241 21190352 -127593120 + L2 LINE L2 2733 2847 -467 253 108 0 77 chr11 21190358 21190423 -127593049 - AluSp/q SINE Alu -1 302 243 357 293 161 51 chr11 21190741 21191096 -127592376 + L2 LINE L2 2816 3209 -104 1152 249 20 64 chr11 21192073 21192419 -127591053 + MER46C DNA MER2_type 1 331 -7 1085 209 35 97 chr11 21193296 21193607 -127589865 - MLT1A1 LTR MaLR -68 297 6 265 289 36 0 chr11 21193932 21194015 -127589457 - L2 LINE L2 -517 2797 2712 355 294 28 0 chr11 21194453 21194562 -127588910 + L2 LINE L2 3197 3308 -5 1009 177 27 5 chr11 21194793 21194979 -127588493 - MLT1D LTR MaLR -315 190 1 3775 200 125 112 chr11 21194981 21196333 -127587139 - MLT1D-int LTR MaLR 0 1371 3 2072 217 36 36 chr11 21196336 21196830 -127586642 - MLT1D LTR MaLR 0 505 12 1221 211 58 12 chr11 21196919 21197261 -127586211 - Charlie5 DNA MER1_type 0 2624 2267 1031 234 36 53 chr11 21197288 21197625 -127585847 - L1ME1 LINE L1 -5 6161 5831 * 1131 231 79 50 chr11 21197620 21198012 -127585460 - L1MEc LINE L1 -4036 2360 1981 1171 128 37 46 chr11 21198012 21198230 -127585242 - L1PA16 LINE L1 -1 6165 5950 1131 231 79 50 chr11 21198230 21198820 -127584652 - L1MEc LINE L1 -4415 1981 1187 928 121 0 35 chr11 21198834 21198975 -127584497 + AluJo SINE Alu 1 136 -176 27 0 0 0 chr11 21198987 21199014 -127584458 + AT_rich Low_complexity Low_complexity 1 27 0 3110 244 96 22 chr11 21199022 21200010 -127583462 - L1MEc LINE L1 -5223 1173 113 711 194 0 0 chr11 21200018 21200147 -127583325 - MER3 DNA MER1_type -87 122 41 529 225 66 53 chr11 21200242 21200393 -127583079 + MIR SINE MIR 96 248 -14 316 258 32 0 chr11 21200553 21200646 -127582826 - MIR SINE MIR -51 211 116 228 286 168 8 chr11 21200666 21200785 -127582687 + MIR SINE MIR 85 222 -40 2353 131 71 13 chr11 21201117 21201498 -127581974 - MER57A LTR ERV1 0 403 1 513 252 94 19 chr11 21201498 21201657 -127581815 - MER57A-int LTR ERV1 0 7537 7367 491 170 113 104 chr11 21201660 21201890 -127581582 - LTR54 LTR ERV1 -271 239 8 294 99 197 14 chr11 21201921 21201992 -127581480 - L1MA3 LINE L1 -2 6303 6220 1890 253 48 52 chr11 21201992 21202308 -127581164 - MER57A-int LTR ERV1 -406 7131 6816 2144 115 7 3 chr11 21202308 21202603 -127580869 - AluSx SINE Alu -16 296 1 1890 253 48 52 chr11 21202603 21202887 -127580585 - MER57A-int LTR ERV1 -721 6816 6533 27 0 0 0 chr11 21202891 21202918 -127580554 + AT_rich Low_complexity Low_complexity 1 27 0 5909 104 11 31 chr11 21202943 21203991 -127579481 - L1PA16 LINE L1 -9 6157 5148 35321 56 9 2 chr11 21203996 21210095 -127573377 - L1PA3 LINE L1 -1 6154 3 1395 207 15 9 chr11 21210095 21210428 -127573044 - L1P LINE L1 -749 5397 5063 1967 145 3 14 chr11 21210428 21210725 -127572747 - MER1B DNA MER1_type 0 339 46 9508 204 17 8 chr11 21210740 21212849 -127570623 - L1 LINE L1 -1075 5787 3660 16125 137 54 36 chr11 21212854 21215809 -127567663 - L1PBa LINE L1 -3854 3008 1 2164 123 0 9 chr11 21215812 21216128 -127567344 - AluSq SINE Alu 0 313 1 1060 153 0 17 chr11 21216136 21216312 -127567160 - AluJb SINE Alu -7 305 133 28 79 0 0 chr11 21216321 21216384 -127567088 + AT_rich Low_complexity Low_complexity 1 63 0 272 288 0 25 chr11 21216384 21216464 -127567008 - L2 LINE L2 -15 3298 3221 2164 64 35 7 chr11 21216583 21216865 -127566607 + AluY SINE Alu 1 290 -21 443 293 24 36 chr11 21216968 21217135 -127566337 - MIR SINE MIR -73 189 25 227 325 171 8 chr11 21217798 21217921 -127565551 + MIR3 SINE MIR 1 143 -65 754 316 60 0 chr11 21218261 21218495 -127564977 + MIR SINE MIR 12 259 -3 300 275 82 0 chr11 21218624 21218759 -127564713 - L1ME LINE L1 -380 5784 5640 223 302 63 24 chr11 21218775 21218901 -127564571 - L3 LINE CR1 -70 1507 1377 192 317 50 40 chr11 21218956 21219057 -127564415 + L2 LINE L2 2870 2971 -342 358 296 20 0 chr11 21219129 21219227 -127564245 - MIR SINE MIR -123 139 40 379 278 17 68 chr11 21219523 21219699 -127563773 - L3 LINE CR1 -613 964 798 229 224 61 0 chr11 21219703 21219752 -127563720 + MIR3 SINE MIR 132 183 -25 1043 183 113 0 chr11 21219780 21219966 -127563506 + MER3 DNA MER1_type 1 207 -2 29 60 0 0 chr11 21220067 21220117 -127563355 + AT_rich Low_complexity Low_complexity 1 50 0 375 284 11 0 chr11 21220119 21220207 -127563265 - L2 LINE L2 -20 3252 3164 430 275 148 7 chr11 21220546 21220695 -127562777 - MLT1I LTR MaLR -142 267 98 222 37 0 0 chr11 21221035 21221062 -127562410 + (CA)n Simple_repeat Simple_repeat 2 28 0 2336 88 0 16 chr11 21221812 21222118 -127561354 - AluSg SINE Alu -9 301 1 2092 163 7 74 chr11 21222136 21222554 -127560918 - MLT1B LTR MaLR 0 390 1 319 118 59 0 chr11 21222771 21222822 -127560650 + L1MC4 LINE L1 6650 6703 -1339 * 358 240 0 52 chr11 21222798 21222894 -127560578 - L1MC4 LINE L1 -1339 6703 6613 1091 263 99 27 chr11 21222949 21223314 -127560158 - MLT1I LTR MaLR 0 409 19 409 268 16 63 chr11 21223543 21223663 -127559809 + MIR SINE MIR 2 112 -150 2117 139 3 3 chr11 21223663 21223964 -127559508 - AluSx SINE Alu -11 301 1 409 268 16 63 chr11 21223964 21224031 -127559441 + MIR SINE MIR 112 181 -81 531 247 123 0 chr11 21224049 21224211 -127559261 + MIR SINE MIR 78 259 -3 293 235 0 0 chr11 21224221 21224289 -127559183 + MIR SINE MIR 184 251 -11 1883 129 109 34 chr11 21224442 21224791 -127558681 - THE1C LTR MaLR 0 375 1 10060 132 7 61 chr11 21224791 21226458 -127557014 - THE1C-int LTR MaLR 0 1580 4 1447 131 206 38 chr11 21226461 21226781 -127556691 - THE1C LTR MaLR 0 375 2 266 404 18 0 chr11 21227229 21227338 -127556134 - MIR3 SINE MIR -52 156 46 3704 127 27 2 chr11 21227389 21227940 -127555532 - L1PA16 LINE L1 -2 6164 5600 663 241 156 48 chr11 21227945 21228215 -127555257 - L1ME3A LINE L1 -9 6161 5863 7737 47 2 0 chr11 21228239 21229480 -127553992 - L1PA6 LINE L1 -2 6152 4913 6555 207 11 7 chr11 21229480 21231265 -127552207 - L1PA16 LINE L1 -545 5621 3830 252 167 0 0 chr11 21231295 21231343 -127552129 + (TCCA)n Simple_repeat Simple_repeat 3 50 0 196 283 0 0 chr11 21232106 21232152 -127551320 - MIR SINE MIR -63 145 100 186 276 250 32 chr11 21232361 21232517 -127550955 + L3b LINE CR1 1198 1387 -196 558 282 69 25 chr11 21233268 21233470 -127550002 + MIR SINE MIR 49 259 -3 405 287 16 16 chr11 21234486 21234608 -127548864 - L2 LINE L2 -5 3308 3187 * 442 308 0 2 chr11 21234604 21234719 -127548753 + MIR SINE MIR 49 162 -46 384 276 109 35 chr11 21235234 21235408 -127548064 - L2 LINE L2 -1 3312 3126 2191 257 82 106 chr11 21235414 21236892 -127546580 - L2 LINE L2 0 3313 1899 2846 104 5 8 chr11 21236892 21237266 -127546206 - THE1C LTR MaLR -2 373 1 2191 257 82 106 chr11 21237266 21237836 -127545636 - L2 LINE L2 -1414 1899 1317 249 210 12 49 chr11 21238362 21238405 -127545067 + CT-rich Low_complexity Low_complexity 5 45 -37 2197 112 0 0 chr11 21238405 21238692 -127544780 - AluSg SINE Alu -23 287 1 249 210 12 49 chr11 21238692 21238729 -127544743 + CT-rich Low_complexity Low_complexity 45 82 0 370 241 145 42 chr11 21238870 21239111 -127544361 + L1MC4 LINE L1 6796 7061 -981 412 252 34 27 chr11 21239129 21239276 -127544196 + MIR SINE MIR 84 231 -31 258 216 0 63 chr11 21239298 21239409 -127544063 + (TTA)n Simple_repeat Simple_repeat 2 105 0 230 252 29 12 chr11 21240238 21240322 -127543150 + MIR SINE MIR 15 102 -106 909 182 118 0 chr11 21240622 21240809 -127542663 - MER3 DNA MER1_type 0 209 1 456 280 76 0 chr11 21241604 21241736 -127541736 - L2 LINE L2 0 3313 3172 372 274 159 0 chr11 21241724 21241837 -127541635 - MIR SINE MIR 0 262 132 * 785 165 0 24 chr11 21242390 21242560 -127540912 - FLAM_A SINE Alu 0 133 4 33294 36 1 2 chr11 21242830 21246833 -127536639 - L1P LINE L1 -987 5159 1164 8323 220 17 37 chr11 21246836 21249048 -127534424 - L1 LINE L1 -1002 5144 2976 658 280 13 36 chr11 21249048 21249273 -127534199 - MER57-int LTR ERV1 -999 6538 6319 1950 209 34 13 chr11 21249288 21249666 -127533806 - MER57A LTR ERV1 -9 394 9 189 327 55 107 chr11 21250115 21250387 -127533085 - L2 LINE L2 -23 3249 2992 2478 91 17 74 chr11 21251210 21251494 -127531978 - L1PB1 LINE L1 -4 6147 5891 2304 117 0 0 chr11 21251494 21251803 -127531669 + AluSx SINE Alu 1 309 -3 2478 91 17 74 chr11 21251803 21251923 -127531549 - L1PB1 LINE L1 -260 5891 5766 817 98 0 0 chr11 21251923 21252025 -127531447 - AluSg/x SINE Alu -15 295 194 1968 124 17 3 chr11 21252127 21252417 -127531055 - AluSg SINE Alu -16 294 1 2810 96 10 5 chr11 21252418 21252816 -127530656 - L1PB1 LINE L1 -371 5780 5381 198 0 0 0 chr11 21252889 21252911 -127530561 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 2240 120 3 0 chr11 21252962 21253262 -127530210 + AluSg SINE Alu 1 301 -9 31275 54 9 4 chr11 21253281 21257577 -127525895 - L1PA5 LINE L1 -5 6149 1826 9531 32 2 4 chr11 21257577 21259443 -127524029 + L1PA4 LINE L1 4294 6155 0 31275 54 9 4 chr11 21259443 21259880 -127523592 - L1PA5 LINE L1 -4328 1826 1393 497 224 206 0 chr11 21260828 21260976 -127522496 - MER5A DNA MER1_type -3 186 4 2954 96 3 0 chr11 21261397 21261760 -127521712 - THE1B LTR MaLR 0 364 1 1956 145 3 3 chr11 21262017 21262306 -127521166 + AluSx SINE Alu 5 293 -19 1331 303 152 32 chr11 21262528 21263337 -127520135 + L2 LINE L2 2007 2912 -402 353 257 22 103 chr11 21263337 21263473 -127519999 - MLT1H LTR MaLR 0 549 425 286 281 70 31 chr11 21263647 21263775 -127519697 - MLT1I LTR MaLR -261 148 16 823 282 70 37 chr11 21263787 21264170 -127519302 + L2 LINE L2 2906 3301 -12 475 291 7 27 chr11 21264712 21264860 -127518612 - MIR3 SINE MIR -48 160 16 480 222 25 30 chr11 21265261 21265416 -127518056 + MIR SINE MIR 10 164 -62 369 0 0 0 chr11 21265510 21265551 -127517921 + (CA)n Simple_repeat Simple_repeat 1 41 0 746 103 43 0 chr11 21266392 21266509 -127516963 - MSTC LTR MaLR 0 428 307 * 887 172 7 7 chr11 21266505 21266656 -127516816 - MSTC LTR MaLR -277 151 1 279 287 43 43 chr11 21267194 21267309 -127516163 + L2 LINE L2 2843 2957 -315 2799 132 9 29 chr11 21267350 21267804 -127515668 - L1PB3 LINE L1 0 6154 5710 708 35 0 0 chr11 21267817 21267904 -127515568 + (TCCA)n Simple_repeat Simple_repeat 4 90 0 500 343 35 0 chr11 21267906 21268049 -127515423 - L2 LINE L2 -9 3263 3116 1638 190 3 7 chr11 21268273 21268573 -127514899 + AluJo SINE Alu 12 310 -2 411 229 59 0 chr11 21268573 21268691 -127514781 - L1ME3 LINE L1 -8 6154 6030 3517 222 83 46 chr11 21268714 21269507 -127513965 - L1ME3 LINE L1 -204 5960 5198 1660 172 3 24 chr11 21269507 21269832 -127513640 - AluJo SINE Alu 0 319 1 3517 222 83 46 chr11 21269832 21269968 -127513504 - L1ME3 LINE L1 -966 5198 5069 264 30 0 0 chr11 21269968 21270001 -127513471 + (TG)n Simple_repeat Simple_repeat 2 34 0 3517 222 83 46 chr11 21270001 21270421 -127513051 - L1ME3 LINE L1 -1095 5069 4666 1371 214 16 58 chr11 21270421 21270734 -127512738 - AluJo SINE Alu -12 300 1 3517 222 83 46 chr11 21270734 21271212 -127512260 - L1ME3 LINE L1 -1498 4666 3947 2293 85 3 0 chr11 21271212 21271518 -127511954 + AluSp SINE Alu 1 307 0 3517 222 83 46 chr11 21271518 21271569 -127511903 - L1ME3 LINE L1 -2217 3947 3899 199 305 71 88 chr11 21272076 21272315 -127511157 + L3 LINE CR1 49 283 -1294 1221 312 34 34 chr11 21272566 21272837 -127510635 - MLT1K LTR MaLR -40 548 275 231 36 0 0 chr11 21272837 21272865 -127510607 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1221 312 34 34 chr11 21272865 21273129 -127510343 - MLT1K LTR MaLR -312 276 13 591 367 65 11 chr11 21273170 21273448 -127510024 + L3 LINE CR1 412 704 -873 527 288 42 119 chr11 21274274 21274490 -127508982 + L3 LINE CR1 707 938 -639 2338 110 7 0 chr11 21274490 21274800 -127508672 - AluSx SINE Alu 0 312 1 527 288 42 119 chr11 21274800 21274825 -127508647 + L3 LINE CR1 938 963 -614 2484 43 40 0 chr11 21274825 21275124 -127508348 - AluY SINE Alu 0 311 1 527 288 42 119 chr11 21275124 21275242 -127508230 + L3 LINE CR1 963 1039 -538 678 211 60 70 chr11 21275252 21275279 -127508193 - MER20 DNA MER1_type -22 197 171 2076 95 0 71 chr11 21275279 21275605 -127507867 - AluY SINE Alu -8 303 1 678 211 60 70 chr11 21275605 21275776 -127507696 - MER20 DNA MER1_type -48 171 1 476 249 59 35 chr11 21275780 21275949 -127507523 + L3 LINE CR1 1056 1228 -349 235 341 0 11 chr11 21275993 21276081 -127507391 + CT-rich Low_complexity Low_complexity 4 90 0 500 161 63 7 chr11 21276112 21276240 -127507232 - L1MB4 LINE L1 -16 6168 6032 1438 204 107 18 chr11 21276787 21277125 -127506347 - MLT1A2 LTR MaLR 0 374 7 374 345 35 11 chr11 21277419 21277593 -127505879 + L3 LINE CR1 1369 1546 -31 1036 194 75 0 chr11 21277594 21277795 -127505677 - MER20 DNA MER1_type -3 216 1 290 247 65 0 chr11 21277948 21278025 -127505447 - MIR SINE MIR -83 179 98 208 344 0 0 chr11 21282449 21282513 -127500959 - MIR SINE MIR -115 93 30 506 217 127 68 chr11 21282839 21283060 -127500412 - MER102a DNA MER1_type -3 327 94 340 141 127 0 chr11 21283094 21283165 -127500307 - L1MB2 LINE L1 -84 6087 6008 375 227 45 18 chr11 21283235 21283345 -127500127 + MER104 DNA Tc2 68 180 0 382 311 28 57 chr11 21283479 21283656 -127499816 - MER5B DNA MER1_type -5 173 2 1722 174 13 13 chr11 21283824 21284123 -127499349 + AluJo SINE Alu 1 299 -13 308 284 88 31 chr11 21284474 21284668 -127498804 - L2 LINE L2 -238 3034 2830 893 172 18 12 chr11 21284752 21284921 -127498551 - L1MB2 LINE L1 -2 6169 6000 819 157 0 11 chr11 21285075 21285439 -127498033 + C-rich Low_complexity Low_complexity 1 360 0 630 171 0 29 chr11 21285582 21285752 -127497720 + C-rich Low_complexity Low_complexity 3 167 0 488 199 11 39 chr11 21285762 21285943 -127497529 + CT-rich Low_complexity Low_complexity 3 178 0 675 220 8 30 chr11 21285952 21286084 -127497388 - FLAM_A SINE Alu -4 129 1 209 216 0 0 chr11 21286249 21286286 -127497186 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 325 299 163 14 chr11 21286689 21286983 -127496489 - L1ME4a LINE L1 -38 6083 5746 280 291 182 9 chr11 21287585 21287695 -127495777 - L2 LINE L2 -1 3271 3143 2025 119 9 38 chr11 21287709 21288028 -127495444 + AluSq SINE Alu 1 310 -3 556 225 31 8 chr11 21288396 21288525 -127494947 + MIR SINE MIR 44 175 -87 247 189 0 19 chr11 21288540 21288593 -127494879 - L2 LINE L2 0 3313 3262 515 290 86 27 chr11 21288661 21288882 -127494590 + MIR SINE MIR 4 237 -25 381 326 163 31 chr11 21289632 21289920 -127493552 + L2 LINE L2 2942 3267 -5 225 0 0 0 chr11 21290051 21290076 -127493396 + (T)n Simple_repeat Simple_repeat 1 25 0 497 343 17 11 chr11 21291342 21291520 -127491952 - MIR3 SINE MIR -13 195 17 1316 288 133 42 chr11 21291994 21293033 -127490439 - L2 LINE L2 0 3313 2168 210 143 0 0 chr11 21293293 21293304 -127490168 + (TAA)n Simple_repeat Simple_repeat 1 11 -31 1847 125 7 46 chr11 21293304 21293607 -127489865 + AluJb SINE Alu 5 295 -17 210 143 0 0 chr11 21293607 21293637 -127489835 + (TAA)n Simple_repeat Simple_repeat 10 42 0 465 186 52 0 chr11 21293992 21294089 -127489383 - MIR3 SINE MIR -3 205 104 205 215 19 28 chr11 21295116 21295223 -127488249 + CT-rich Low_complexity Low_complexity 2 107 0 198 340 0 0 chr11 21296304 21296357 -127487115 - L2 LINE L2 -15 3257 3205 293 255 46 85 chr11 21296589 21296742 -127486730 - L2 LINE L2 -260 3012 2866 348 324 138 7 chr11 21297189 21297334 -127486138 + MIR SINE MIR 20 183 -79 2261 109 3 0 chr11 21297625 21297928 -127485544 + AluSq SINE Alu 1 304 -9 808 128 0 0 chr11 21297933 21298042 -127485430 - MER50-int LTR ERV1 -7096 109 1 1053 148 42 51 chr11 21298127 21298283 -127485189 - MER50 LTR ERV1 -23 711 556 2512 65 0 3 chr11 21298283 21298589 -127484883 + AluY SINE Alu 1 305 -6 1053 148 42 51 chr11 21298589 21298648 -127484824 - MER50 LTR ERV1 -178 556 498 5951 192 29 48 chr11 21299301 21300632 -127482840 - L1MB8 LINE L1 -60 6118 4864 7922 191 35 86 chr11 21300632 21302480 -127480992 - MER52A LTR ERV1 0 1755 1 5951 192 29 48 chr11 21302480 21303666 -127479806 - L1MB8 LINE L1 -1314 4864 3657 297 319 22 22 chr11 21304080 21304265 -127479207 - L1M4 LINE L1 -2157 3989 3805 792 320 97 35 chr11 21304758 21305633 -127477839 - L1M4 LINE L1 -2692 3454 2526 262 233 41 0 chr11 21305743 21305816 -127477656 - MLT1J2 LTR MaLR -371 79 4 189 184 0 0 chr11 21305920 21305958 -127477514 + L2 LINE L2 3271 3308 -5 210 290 0 32 chr11 21306156 21306218 -127477254 + MIR SINE MIR 189 248 -14 201 154 0 0 chr11 21306224 21306263 -127477209 + (ATG)n Simple_repeat Simple_repeat 1 39 0 349 319 12 30 chr11 21307418 21307584 -127475888 + MIR SINE MIR 30 192 -70 458 299 84 86 chr11 21308483 21308839 -127474633 - L2 LINE L2 -340 2974 2618 2580 49 0 7 chr11 21308839 21309145 -127474327 + AluY SINE Alu 1 304 -7 458 299 84 86 chr11 21309145 21309337 -127474135 - L2 LINE L2 -696 2618 2427 378 279 87 0 chr11 21310280 21310384 -127473088 + MIR SINE MIR 30 142 -66 460 287 127 83 chr11 21310389 21310834 -127472638 - L2 LINE L2 0 3313 2836 339 25 0 0 chr11 21311206 21311246 -127472226 + (TATG)n Simple_repeat Simple_repeat 2 41 0 4925 140 18 27 chr11 21311250 21312212 -127471260 - L1PA16 LINE L1 -14 6152 5200 290 247 45 63 chr11 21312531 21312799 -127470673 + Charlie8 DNA MER1_type 75 420 -1997 203 261 0 0 chr11 21312885 21312931 -127470541 - MIR SINE MIR -167 95 50 20466 151 35 23 chr11 21312951 21315245 -127468227 - L1 LINE L1 -807 6758 4493 3398 69 14 2 chr11 21315245 21315682 -127467790 + MLT2A1 LTR ERVL 3 444 0 20466 151 35 23 chr11 21315682 21315812 -127467660 - L1 LINE L1 -3072 4493 4366 2028 124 0 0 chr11 21315812 21316079 -127467393 - AluSx SINE Alu -25 287 21 20466 151 35 23 chr11 21316079 21317075 -127466397 - L1 LINE L1 -3199 4366 3384 2048 103 59 7 chr11 21317075 21317365 -127466107 - AluY SINE Alu -6 305 1 20466 151 35 23 chr11 21317365 21317816 -127465656 - L1 LINE L1 -4181 3384 2940 339 44 0 0 chr11 21317816 21317861 -127465611 + (TG)n Simple_repeat Simple_repeat 2 46 0 20466 151 35 23 chr11 21317861 21318289 -127465183 - L1 LINE L1 -4625 2940 2519 207 0 0 0 chr11 21318289 21318312 -127465160 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 20466 151 35 23 chr11 21318312 21320654 -127462818 - L1 LINE L1 -5046 2519 12 7322 157 46 29 chr11 21320809 21321787 -127461685 - L1MA6 LINE L1 -12 6288 5328 4101 108 10 3 chr11 21321787 21322407 -127461065 - L1PB1 LINE L1 -2 6149 5526 7322 157 46 29 chr11 21322407 21324112 -127459360 - L1MA6 LINE L1 -972 5328 3561 2594 29 7 3 chr11 21324287 21324597 -127458875 + AluY SINE Alu 1 311 0 40 49 0 0 chr11 21325483 21325544 -127457928 + AT_rich Low_complexity Low_complexity 1 61 0 2424 77 3 0 chr11 21325544 21325854 -127457618 - AluY SINE Alu 0 311 1 10830 204 28 15 chr11 21325859 21326620 -127456852 - L1PA16 LINE L1 -9 6157 5408 183 42 0 0 chr11 21326620 21326644 -127456828 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2007 97 0 70 chr11 21326644 21326943 -127456529 - AluSx SINE Alu -31 281 4 10830 204 28 15 chr11 21326943 21329975 -127453497 - L1PA16 LINE L1 -757 5409 2315 349 275 0 0 chr11 21329998 21330078 -127453394 - MIR SINE MIR -130 132 53 260 247 111 0 chr11 21330333 21330414 -127453058 - MER103 DNA DNA 0 166 77 668 295 55 5 chr11 21330431 21330648 -127452824 - MIR SINE MIR -33 229 2 234 298 0 0 chr11 21331908 21331955 -127451517 - L2 LINE L2 -21 3292 3246 991 296 57 49 chr11 21331987 21332599 -127450873 + L2 LINE L2 2673 3299 -14 405 254 9 27 chr11 21332617 21332727 -127450745 - L2 LINE L2 -189 3083 2976 180 277 62 31 chr11 21333937 21334002 -127449470 + L2 LINE L2 3203 3269 -3 195 297 40 14 chr11 21334236 21334310 -127449162 - L2 LINE L2 -252 3020 2945 1923 136 24 53 chr11 21334631 21335006 -127448466 - THE1B LTR MaLR 0 364 1 254 331 24 60 chr11 21335117 21335283 -127448189 - MER5B DNA MER1_type -16 162 3 245 279 0 0 chr11 21335472 21335540 -127447932 - MLT1J LTR MaLR -45 466 399 2291 148 5 16 chr11 21335540 21335919 -127447553 + THE1C LTR MaLR 1 375 0 5034 124 35 43 chr11 21335919 21337415 -127446057 + THE1C-int LTR MaLR 1 1580 0 2392 114 44 6 chr11 21337415 21337776 -127445696 + THE1C LTR MaLR 1 375 0 688 270 56 0 chr11 21337926 21338104 -127445368 - MLT1J LTR MaLR -320 191 4 658 274 58 80 chr11 21338976 21339337 -127444135 - MLT1J2 LTR MaLR -72 378 26 514 271 166 18 chr11 21339584 21339813 -127443659 + MIR SINE MIR 3 262 0 1904 221 37 39 chr11 21340636 21340781 -127442691 - L1MC4a LINE L1 0 7808 7664 2251 116 0 3 chr11 21340781 21341083 -127442389 - AluSg SINE Alu -9 301 1 1904 221 37 39 chr11 21341083 21341526 -127441946 - L1MC4a LINE L1 -144 7664 7221 2002 118 50 0 chr11 21341549 21341828 -127441644 + AluSc SINE Alu 1 293 -16 32 0 0 0 chr11 21342025 21342057 -127441415 + AT_rich Low_complexity Low_complexity 1 32 0 206 156 22 0 chr11 21342101 21342146 -127441326 + G-rich Low_complexity Low_complexity 5 50 0 276 313 108 29 chr11 21342386 21342689 -127440783 - L2 LINE L2 -191 3081 2768 807 172 18 12 chr11 21342698 21342867 -127440605 - L1MB2 LINE L1 -2 6169 6000 2155 129 0 3 chr11 21343633 21343936 -127439536 - AluSx SINE Alu -10 302 1 639 111 0 0 chr11 21344000 21344099 -127439373 - LTR12 LTR ERV1 0 714 616 290 236 11 0 chr11 21344103 21344192 -127439280 - LTR30 LTR ERV1 -80 642 553 1432 73 0 150 chr11 21344193 21344467 -127439005 - LTR12 LTR ERV1 -429 285 53 248 231 0 0 chr11 21344467 21344519 -127438953 - LTR30 LTR ERV1 -670 52 1 279 54 0 0 chr11 21344612 21344649 -127438823 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 766 227 153 61 chr11 21344649 21344848 -127438624 - L2 LINE L2 -13 3300 3064 195 42 0 0 chr11 21344848 21344872 -127438600 + (GA)n Simple_repeat Simple_repeat 1 24 0 766 227 153 61 chr11 21344872 21344967 -127438505 - L2 LINE L2 -249 3064 2979 640 254 114 40 chr11 21344979 21345207 -127438265 - MIR SINE MIR 0 262 18 2296 183 51 26 chr11 21345360 21345851 -127437621 + MLT1D LTR MaLR 1 503 -2 186 208 0 0 chr11 21345969 21346017 -127437455 + G-rich Low_complexity Low_complexity 4 51 0 202 300 106 24 chr11 21346167 21346337 -127437135 - L2 LINE L2 -1226 2088 1905 202 284 198 12 chr11 21346408 21346489 -127436983 + L2 LINE L2 3177 3272 0 389 311 34 7 chr11 21349260 21349408 -127434064 + MIR SINE MIR 65 216 -46 279 0 0 0 chr11 21349505 21349536 -127433936 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 332 299 8 17 chr11 21349557 21349674 -127433798 - MIR SINE MIR -124 138 23 377 274 268 0 chr11 21349698 21349862 -127433610 + MIR SINE MIR 29 236 -26 787 275 34 50 chr11 21350188 21350382 -127433090 - MIR SINE MIR -3 259 69 2225 121 0 7 chr11 21350382 21350689 -127432783 - AluSx SINE Alu -7 305 1 787 275 34 50 chr11 21350689 21350756 -127432716 - MIR SINE MIR -193 69 2 278 270 0 27 chr11 21350856 21350930 -127432542 + CT-rich Low_complexity Low_complexity 1 72 0 304 312 128 62 chr11 21350992 21351329 -127432143 + L1M2 LINE L1 897 1255 -5594 1519 126 18 5 chr11 21351470 21351692 -127431780 - AluSx SINE Alu -87 225 1 1046 159 65 0 chr11 21351839 21352040 -127431432 - MSTB2 LTR MaLR -243 214 1 393 232 30 0 chr11 21352283 21352382 -127431090 + MER5A DNA MER1_type 4 105 -84 549 276 41 21 chr11 21353459 21353604 -127429868 + L2 LINE L2 3125 3272 0 203 293 52 0 chr11 21353780 21353838 -127429634 - MIR SINE MIR 0 262 202 458 314 41 6 chr11 21354172 21354344 -127429128 + MIR SINE MIR 77 254 -8 189 0 0 0 chr11 21354346 21354367 -127429105 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1144 315 85 44 chr11 21354529 21355544 -127427928 - L2 LINE L2 0 3272 2227 1721 83 9 4 chr11 21355558 21355787 -127427685 + AluY SINE Alu 82 311 0 9922 181 66 49 chr11 21356727 21358705 -127424767 + L1MC3 LINE L1 4888 6939 -846 186 43 0 0 chr11 21358705 21358728 -127424744 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 9922 181 66 49 chr11 21358728 21359591 -127423881 + L1MC3 LINE L1 6939 7785 0 345 316 67 26 chr11 21360613 21360806 -127422666 - MIR SINE MIR -34 228 28 1447 224 171 36 chr11 21361377 21361900 -127421572 - MLT1G LTR MaLR 0 590 34 513 300 61 72 chr11 21362122 21362494 -127420978 - MLT1J2 LTR MaLR -37 413 28 243 362 19 29 chr11 21362877 21362982 -127420490 - MIR SINE MIR -71 137 34 2061 109 17 7 chr11 21363151 21363444 -127420028 + AluSx SINE Alu 1 296 -16 765 278 46 5 chr11 21363655 21363871 -127419601 + MIR SINE MIR 33 257 -5 343 186 54 0 chr11 21364618 21364747 -127418725 + (TA)n Simple_repeat Simple_repeat 1 136 0 22 0 0 0 chr11 21364789 21364811 -127418661 + AT_rich Low_complexity Low_complexity 1 22 0 464 316 238 3 chr11 21365005 21365287 -127418185 + L3 LINE CR1 820 1167 -410 214 290 116 0 chr11 21365352 21365421 -127418051 + L3 LINE CR1 1190 1266 -311 310 233 220 53 chr11 21365777 21365927 -127417545 - MER5A DNA MER1_type -1 188 14 333 264 194 7 chr11 21366651 21366795 -127416677 + MIR SINE MIR 80 250 -12 478 321 0 25 chr11 21370867 21371029 -127412443 + MER5B DNA MER1_type 4 161 -17 480 277 169 15 chr11 21371472 21371667 -127411805 - MIR SINE MIR -32 230 6 247 261 178 38 chr11 21371857 21372014 -127411458 - MIR SINE MIR -11 251 73 21 0 0 0 chr11 21373816 21373837 -127409635 + AT_rich Low_complexity Low_complexity 1 21 0 9255 154 24 23 chr11 21374673 21374994 -127408478 - L1M1 LINE L1 -4369 3196 2877 339 44 0 0 chr11 21374994 21375039 -127408433 + (TG)n Simple_repeat Simple_repeat 2 46 0 9255 154 24 23 chr11 21375039 21376465 -127407007 - L1M1 LINE L1 -4688 2877 1448 370 233 9 60 chr11 21377279 21377395 -127406077 + MIR3 SINE MIR 84 193 -15 198 0 0 0 chr11 21379225 21379247 -127404225 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 1958 149 313 23 chr11 21380272 21380748 -127402724 + LTR18B LTR ERVL 1 614 0 1618 191 14 0 chr11 21380754 21381042 -127402430 + HERVL18 LTR ERVL 1 292 -5755 5355 178 9 6 chr11 21381064 21381920 -127401552 + HERVL18 LTR ERVL 2718 3576 -2471 4610 135 8 8 chr11 21381925 21382593 -127400879 + HERVL18 LTR ERVL 4394 5061 -986 182 338 28 14 chr11 21383318 21383389 -127400083 + L2 LINE L2 2764 2835 -479 294 250 177 57 chr11 21383618 21383742 -127399730 + L2 LINE L2 3134 3272 0 207 200 59 82 chr11 21383829 21383914 -127399558 + MIR SINE MIR 110 192 -70 611 271 101 10 chr11 21385104 21385311 -127398161 + MIR SINE MIR 1 226 -36 1646 159 16 32 chr11 21385545 21385853 -127397619 - L1MC1 LINE L1 -17 6316 6014 10035 45 11 115 chr11 21385861 21387394 -127396078 - SVA Other Other 0 1386 13 1256 177 23 8 chr11 21387442 21387707 -127395765 - L1MA8 LINE L1 -17 6274 6006 639 280 95 4 chr11 21388702 21388945 -127394527 + LTR33 LTR ERVL 10 274 -247 332 367 8 0 chr11 21389161 21389289 -127394183 + MIR SINE MIR 37 165 -97 362 253 13 0 chr11 21390132 21390211 -127393261 + L2 LINE L2 3234 3313 0 394 248 190 0 chr11 21390514 21390651 -127392821 + MIR SINE MIR 100 262 0 296 280 112 16 chr11 21390740 21390865 -127392607 + MIR3 SINE MIR 42 178 -30 372 287 80 93 chr11 21391276 21391513 -127391959 - MIR SINE MIR -10 252 19 1688 141 33 10 chr11 21391515 21391820 -127391652 + L1MB4 LINE L1 5869 6180 0 281 97 10 194 chr11 21391828 21391931 -127391541 + L1MB8 LINE L1 6094 6177 -1 269 281 72 44 chr11 21391943 21392192 -127391280 + HAL1b LINE L1 231 486 -862 199 359 0 0 chr11 21392850 21392914 -127390558 - L2 LINE L2 -21 3251 3188 270 227 45 0 chr11 21393117 21393183 -127390289 - MLT1K LTR MaLR 0 588 520 220 343 50 36 chr11 21393399 21393539 -127389933 - MIR SINE MIR -109 153 12 480 278 83 7 chr11 21394447 21394591 -127388881 - LTR33 LTR ERVL -363 158 4 21 36 0 0 chr11 21394670 21394698 -127388774 + AT_rich Low_complexity Low_complexity 1 28 0 273 119 15 30 chr11 21394704 21394771 -127388701 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 435 65 0 0 chr11 21395082 21395144 -127388328 + Alu SINE Alu 246 307 -4 1782 158 0 24 chr11 21395270 21395568 -127387904 - AluJb SINE Alu -10 302 12 378 0 0 0 chr11 21395771 21395813 -127387659 + (TG)n Simple_repeat Simple_repeat 2 43 0 243 222 0 0 chr11 21396057 21396102 -127387370 + L3 LINE CR1 1521 1565 -12 375 270 74 34 chr11 21396673 21396821 -127386651 - MIR SINE MIR -89 173 20 1884 152 10 3 chr11 21396867 21397164 -127386308 - AluJo SINE Alu -13 299 1 2310 96 0 0 chr11 21397175 21397467 -127386005 - AluSq SINE Alu -21 292 1 271 295 156 8 chr11 21397531 21397653 -127385819 + MIR SINE MIR 47 186 -76 1360 301 84 38 chr11 21397751 21398522 -127384950 - L3 LINE CR1 -98 1479 673 592 200 0 0 chr11 21398522 21398607 -127384865 + FLAM_A SINE Alu 1 85 -57 524 100 0 0 chr11 21398615 21398685 -127384787 + L1MA1 LINE L1 6229 6298 -4 2187 68 11 4 chr11 21399584 21399895 -127383577 + AluY SINE Alu 2 314 0 2489 60 3 0 chr11 21401178 21401478 -127381994 + AluY SINE Alu 1 301 -10 250 354 63 8 chr11 21401907 21402034 -127381438 - L2 LINE L2 -1 3312 3179 539 337 47 5 chr11 21403484 21403677 -127379795 - MIR SINE MIR -61 201 1 722 252 103 93 chr11 21403794 21404191 -127379281 - MLT1J2 LTR MaLR -46 404 4 526 281 190 14 chr11 21404494 21404715 -127378757 + MIR SINE MIR 2 261 -1 242 303 82 109 chr11 21404720 21405024 -127378448 + L2 LINE L2 2976 3271 -1 1856 216 41 52 chr11 21405520 21406081 -127377391 - L1MC4 LINE L1 -2 8040 7486 213 175 0 0 chr11 21406478 21406518 -127376954 - L2 LINE L2 0 3313 3274 349 312 9 9 chr11 21407871 21407980 -127375492 + L2 LINE L2 3203 3311 -2 307 331 13 43 chr11 21408104 21408282 -127375190 + MIR3 SINE MIR 6 181 -65 446 229 185 19 chr11 21408749 21408906 -127374566 - MIR SINE MIR -1 261 79 1693 138 16 0 chr11 21409101 21409355 -127374117 + L1PA16 LINE L1 5889 6146 -20 21 36 0 0 chr11 21409408 21409436 -127374036 + AT_rich Low_complexity Low_complexity 1 28 0 587 287 32 11 chr11 21409479 21409667 -127373805 + L1MEc LINE L1 90 281 -5924 22 0 0 0 chr11 21409686 21409708 -127373764 + AT_rich Low_complexity Low_complexity 1 22 0 1777 56 82 17 chr11 21409717 21409950 -127373522 + L1PA6 LINE L1 5907 6154 0 2779 207 43 25 chr11 21409953 21410585 -127372887 - L1ME1 LINE L1 -10 6156 5514 440 261 115 100 chr11 21410711 21411066 -127372406 + L1MEc LINE L1 501 896 -5309 25 0 0 0 chr11 21411066 21411091 -127372381 + AT_rich Low_complexity Low_complexity 1 25 0 440 261 115 100 chr11 21411091 21411373 -127372099 + L1MEc LINE L1 896 1172 -5033 28 29 0 0 chr11 21411525 21411560 -127371912 + AT_rich Low_complexity Low_complexity 1 35 0 683 274 94 63 chr11 21411762 21412221 -127371251 - MLT1H LTR MaLR -37 512 40 490 303 34 29 chr11 21412268 21412617 -127370855 + L1MEc LINE L1 1398 1738 -869 28 61 0 0 chr11 21412696 21412745 -127370727 + AT_rich Low_complexity Low_complexity 1 49 0 1085 138 0 0 chr11 21412752 21412911 -127370561 + L1P3 LINE L1 79 237 -5638 * 11468 170 7 30 chr11 21412910 21415446 -127368026 + L1P3 LINE L1 734 3281 -3180 4992 82 10 44 chr11 21415445 21415751 -127367721 + L1PA8A LINE L1 5403 5718 -413 * 2341 100 0 0 chr11 21415751 21416050 -127367422 + AluSg SINE Alu 1 299 -11 4992 82 10 44 chr11 21416050 21416470 -127367002 + L1PA8A LINE L1 5718 6104 -27 53 0 0 0 chr11 21416472 21416525 -127366947 + AT_rich Low_complexity Low_complexity 1 53 0 1174 313 40 21 chr11 21417135 21417931 -127365541 + L1ME LINE L1 4893 5701 -469 1433 115 0 102 chr11 21418082 21418242 -127365230 - L1MA4A LINE L1 -262 6041 5925 2314 76 0 10 chr11 21418242 21418543 -127364929 - AluSg1 SINE Alu -11 298 1 1433 115 0 102 chr11 21418543 21418686 -127364786 - L1MA4A LINE L1 -378 5925 5769 4116 104 23 2 chr11 21418733 21419351 -127364121 - L1PB2 LINE L1 -7 6144 5514 * 9998 32 0 2 chr11 21419350 21421318 -127362154 + L1PA4 LINE L1 4191 6152 -3 1087 87 17 12 chr11 21419351 21421483 -127361989 - L1P5 LINE L1 -623 5528 5360 468 107 40 0 chr11 21421471 21421557 -127361915 - L1ME LINE L1 -367 5797 5709 * 344 235 52 26 chr11 21421605 21421720 -127361752 + L1ME3A LINE L1 6045 6162 -8 2359 292 81 46 chr11 21421756 21422693 -127360779 + L1ME LINE L1 2509 3411 -2735 1938 251 61 15 chr11 21422693 21423216 -127360256 - MLT1H LTR MaLR 0 549 3 2359 292 81 46 chr11 21423216 21424525 -127358947 + L1ME LINE L1 3411 4835 -1311 22 35 0 0 chr11 21424628 21424657 -127358815 + AT_rich Low_complexity Low_complexity 1 29 0 265 248 34 63 chr11 21424720 21424926 -127358546 + L1ME LINE L1 4963 5162 -984 750 300 43 35 chr11 21425023 21425509 -127357963 + L1ME LINE L1 5307 5783 -379 252 200 0 0 chr11 21425879 21425934 -127357538 + (TA)n Simple_repeat Simple_repeat 1 55 0 250 382 45 45 chr11 21426097 21426275 -127357197 - MER5A DNA MER1_type -3 186 9 329 212 0 0 chr11 21426398 21426464 -127357008 - MER5A DNA MER1_type -1 188 123 570 288 46 50 chr11 21426464 21426766 -127356706 + L1MB4 LINE L1 5 305 -6237 589 177 15 31 chr11 21426833 21426963 -127356509 + L1PA8 LINE L1 6045 6172 0 999 155 5 10 chr11 21426980 21427173 -127356299 + L1MA4 LINE L1 6105 6296 -4 3299 230 43 32 chr11 21427288 21427554 -127355918 + L1MB4 LINE L1 612 874 -5772 1592 204 3 37 chr11 21427554 21427877 -127355595 - AluJo SINE Alu 0 312 1 3299 230 43 32 chr11 21427877 21428880 -127354592 + L1MB4 LINE L1 874 1849 -4797 3577 226 23 23 chr11 21428885 21429816 -127353656 + L1MB4 LINE L1 3804 4734 -1910 * 3810 178 47 73 chr11 21429813 21430404 -127353068 + L1MB4 LINE L1 5448 6001 -677 5894 107 13 6 chr11 21430404 21431430 -127352042 + L1PA8A LINE L1 5098 6130 -1 3810 178 47 73 chr11 21431430 21432063 -127351409 + L1MB4 LINE L1 6001 6649 -29 557 252 24 0 chr11 21432075 21432198 -127351274 - MER5A DNA MER1_type -52 137 12 326 271 20 86 chr11 21432396 21432547 -127350925 + L2 LINE L2 2811 2951 -363 250 125 0 0 chr11 21432583 21432623 -127350849 - L1PA10 LINE L1 -7 6161 6122 1276 246 101 37 chr11 21432668 21433184 -127350288 - MLT1H LTR MaLR 0 549 1 594 241 8 0 chr11 21433246 21433379 -127350093 + MER45A DNA AcHobo 1 134 -44 265 271 171 16 chr11 21433415 21433544 -127349928 + L2 LINE L2 3165 3313 0 573 289 60 39 chr11 21433994 21434226 -127349246 - MIR SINE MIR -6 256 20 237 150 0 0 chr11 21434222 21434262 -127349210 - L2 LINE L2 -2 3311 3272 * 3304 132 62 11 chr11 21436895 21437456 -127346016 - MER4B LTR ERV1 -20 590 1 571 255 33 38 chr11 21438030 21438214 -127345258 + MER5A DNA MER1_type 7 189 0 35 0 0 0 chr11 21438438 21438473 -127344999 + AT_rich Low_complexity Low_complexity 1 35 0 283 240 40 13 chr11 21439363 21439438 -127344034 - MER81 DNA DNA 0 114 38 180 0 0 0 chr11 21439477 21439497 -127343975 + (TTA)n Simple_repeat Simple_repeat 2 21 0 488 273 55 38 chr11 21439556 21439739 -127343733 - MIR3 SINE MIR -3 205 20 2269 128 16 25 chr11 21441177 21441544 -127341928 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr11 21441615 21441636 -127341836 + AT_rich Low_complexity Low_complexity 1 21 0 21 89 0 0 chr11 21441923 21441979 -127341493 + AT_rich Low_complexity Low_complexity 1 56 0 439 333 43 0 chr11 21442634 21442772 -127340700 - L2 LINE L2 -2 3270 3127 611 254 18 55 chr11 21443775 21443992 -127339480 - MER58C DNA MER1_type -6 209 1 503 290 70 20 chr11 21444023 21444223 -127339249 - MIR SINE MIR -21 241 32 477 336 64 70 chr11 21444724 21445194 -127338278 - L1MEd LINE L1 -5649 470 4 371 324 16 44 chr11 21445434 21445616 -127337856 + MIR SINE MIR 5 181 -81 806 211 111 54 chr11 21447604 21447883 -127335589 - MER2 DNA MER2_type -22 323 29 1642 159 23 36 chr11 21448022 21448323 -127335149 - AluSq SINE Alu -16 297 1 543 306 190 21 chr11 21448951 21449340 -127334132 + L3 LINE CR1 1051 1505 -72 244 236 167 35 chr11 21451365 21451509 -127331963 - MIR SINE MIR -9 253 91 644 298 62 13 chr11 21451701 21451926 -127331546 - MIR SINE MIR -12 250 15 2426 85 7 0 chr11 21452427 21452733 -127330739 + AluSx SINE Alu 1 308 -4 894 276 80 32 chr11 21452883 21453411 -127330061 - L1ME4a LINE L1 -1 6120 5568 587 165 66 0 chr11 21454188 21454309 -127329163 + L1MA8 LINE L1 6159 6287 -4 21 0 0 0 chr11 21454309 21454330 -127329142 + AT_rich Low_complexity Low_complexity 1 21 0 367 224 0 56 chr11 21454344 21454451 -127329021 - L1M4 LINE L1 -3903 2243 2143 262 299 19 28 chr11 21454895 21455002 -127328470 + MER5A DNA MER1_type 32 137 -52 849 219 66 31 chr11 21455293 21455521 -127327951 - MIR SINE MIR -11 251 16 225 378 0 0 chr11 21455678 21455776 -127327696 - L2 LINE L2 -240 3032 2935 202 297 93 8 chr11 21456188 21456306 -127327166 - L2 LINE L2 -862 2452 2325 333 319 83 56 chr11 21458227 21458814 -127324658 - L2 LINE L2 -346 2968 2366 1134 283 80 20 chr11 21458820 21459219 -127324253 - LTR16A LTR ERVL 0 450 28 317 273 102 28 chr11 21459429 21459605 -127323867 + L2 LINE L2 3125 3313 0 224 296 104 16 chr11 21459621 21459746 -127323726 - MIR3 SINE MIR -7 201 66 622 244 95 143 chr11 21461159 21461676 -127321796 - L2 LINE L2 -6 3307 2816 386 20 20 0 chr11 21461726 21461777 -127321695 + (TC)n Simple_repeat Simple_repeat 2 53 0 243 146 0 0 chr11 21461776 21461817 -127321655 + (TG)n Simple_repeat Simple_repeat 2 42 0 306 243 39 29 chr11 21462101 21462204 -127321268 - LTR67 LTR ERVL -24 533 430 229 284 92 9 chr11 21462805 21462914 -127320558 - MLT1F LTR MaLR -106 436 319 303 146 0 0 chr11 21462988 21463043 -127320429 + (TCCC)n Simple_repeat Simple_repeat 3 57 0 2049 116 32 0 chr11 21463100 21463384 -127320088 - AluSg SINE Alu -17 293 1 484 246 122 44 chr11 21463389 21463646 -127319826 - MLT1F LTR MaLR -289 266 1 2131 110 0 3 chr11 21463691 21464004 -127319468 + AluSx SINE Alu 1 312 0 411 323 23 0 chr11 21464056 21464186 -127319286 - L3 LINE CR1 -166 1411 1279 262 265 78 49 chr11 21464186 21464288 -127319184 + MIR SINE MIR 1 105 -157 341 301 0 0 chr11 21465366 21465469 -127318003 + MIR SINE MIR 160 262 0 23 0 0 0 chr11 21465891 21465914 -127317558 + AT_rich Low_complexity Low_complexity 1 23 0 480 232 118 119 chr11 21466079 21466169 -127317303 - MIR SINE MIR 0 262 173 1980 106 4 14 chr11 21466169 21466444 -127317028 + AluSc SINE Alu 32 303 -6 480 232 118 119 chr11 21466444 21466614 -127316858 - MIR SINE MIR -89 173 2 605 212 14 7 chr11 21466888 21467034 -127316438 + MER105 DNA DNA 34 180 -24 282 183 72 45 chr11 21467793 21467908 -127315564 - L1ME4a LINE L1 -2 6079 1234 793 267 17 13 chr11 21467939 21468175 -127315297 - LTR16A1 LTR ERVL 0 457 221 505 287 69 29 chr11 21469738 21469912 -127313560 - MER63A DNA MER1_type -29 181 1 661 274 25 0 chr11 21470476 21470633 -127312839 + MIR SINE MIR 101 261 -1 36 23 0 0 chr11 21470917 21470960 -127312512 + AT_rich Low_complexity Low_complexity 1 43 0 1814 155 0 34 chr11 21470961 21471257 -127312215 - AluJo SINE Alu -26 286 1 1585 110 77 7 chr11 21471259 21471558 -127311914 - L1MA4 LINE L1 0 6300 5981 192 264 139 0 chr11 21471565 21471637 -127311835 + L2 LINE L2 2993 3074 -198 1395 131 84 7 chr11 21471834 21472131 -127311341 - L1MA4 LINE L1 0 6300 5981 189 0 0 0 chr11 21472244 21472265 -127311207 + (A)n Simple_repeat Simple_repeat 1 21 0 598 238 44 6 chr11 21472456 21472637 -127310835 - MER58A DNA MER1_type -1 223 36 294 304 98 9 chr11 21477359 21477471 -127306001 + L2 LINE L2 3181 3302 -11 565 179 34 162 chr11 21477506 21477740 -127305732 + MIR SINE MIR 56 259 -3 218 320 13 13 chr11 21478888 21478966 -127304506 + MIR SINE MIR 5 82 -180 412 260 16 16 chr11 21479067 21479190 -127304282 - MIR SINE MIR -2 260 138 2266 109 0 0 chr11 21479417 21479711 -127303761 + AluSg SINE Alu 1 294 -16 2498 67 0 0 chr11 21479843 21480142 -127303330 + AluY SINE Alu 1 299 -12 230 333 108 21 chr11 21480173 21480266 -127303206 - MIR SINE MIR -90 118 18 1165 288 75 53 chr11 21480646 21481614 -127301858 + L1MEd LINE L1 328 1362 -4948 1791 164 17 0 chr11 21481614 21481906 -127301566 + AluJo SINE Alu 1 297 -15 1165 288 75 53 chr11 21481906 21482157 -127301315 + L1MEd LINE L1 1362 1606 -4704 230 262 48 12 chr11 21482267 21482351 -127301121 + L1ME LINE L1 5667 5753 -409 626 146 9 9 chr11 21482359 21482469 -127301003 - Tigger1 DNA MER2_type -1 2417 2308 456 153 153 0 chr11 21482472 21482570 -127300902 - Tigger1 DNA MER2_type -419 1999 1887 4051 121 18 12 chr11 21482636 21483296 -127300176 + L1PB1 LINE L1 5485 6148 -3 31 88 0 0 chr11 21483534 21483614 -127299858 + AT_rich Low_complexity Low_complexity 1 80 0 1196 218 4 13 chr11 21485096 21485335 -127298137 - MER8 DNA MER2_type -1 238 2 30 45 0 0 chr11 21485484 21485528 -127297944 + AT_rich Low_complexity Low_complexity 1 44 0 325 304 67 7 chr11 21486515 21486650 -127296822 - MLT1L LTR MaLR -165 450 308 752 273 39 43 chr11 21488204 21488460 -127295012 + MLT1I LTR MaLR 112 366 -43 923 205 95 15 chr11 21489580 21489906 -127293566 - MSTD LTR MaLR 0 396 1 188 65 0 32 chr11 21490509 21490540 -127292932 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 21 57 0 0 chr11 21490813 21490848 -127292624 + AT_rich Low_complexity Low_complexity 1 35 0 1240 309 110 28 chr11 21490973 21491836 -127291636 + L2 LINE L2 2398 3312 -1 198 0 0 0 chr11 21491836 21491858 -127291614 + (GGAA)n Simple_repeat Simple_repeat 4 25 0 734 226 198 12 chr11 21492206 21492463 -127291009 - MLT1J2 LTR MaLR -122 328 24 387 0 0 0 chr11 21493532 21493575 -127289897 + (TCCA)n Simple_repeat Simple_repeat 2 44 0 348 322 35 0 chr11 21493655 21493770 -127289702 + MER91C DNA MER1_type 21 139 -1 401 351 74 74 chr11 21493811 21494176 -127289296 - L2 LINE L2 -2 3270 2906 265 149 15 45 chr11 21494324 21494391 -127289081 + Charlie7 DNA MER1_type 41 105 -2507 265 327 107 27 chr11 21495104 21495254 -127288218 + MIR SINE MIR 3 164 -98 3001 69 0 12 chr11 21495278 21495682 -127287790 + L1PA8 LINE L1 5767 6165 -7 361 343 144 3 chr11 21496076 21496388 -127287084 - L2 LINE L2 -398 2916 2561 2416 98 3 0 chr11 21496580 21496886 -127286586 - AluSp SINE Alu -6 307 1 244 311 107 10 chr11 21496923 21497026 -127286446 + L2 LINE L2 3159 3271 -1 588 236 0 8 chr11 21497555 21497678 -127285794 + L2 LINE L2 3191 3312 -1 209 205 64 64 chr11 21497816 21497894 -127285578 - MIR SINE MIR -153 109 32 2028 122 3 23 chr11 21498490 21498794 -127284678 - AluSx SINE Alu -14 298 1 33 25 0 0 chr11 21498977 21499017 -127284455 + AT_rich Low_complexity Low_complexity 1 40 0 449 135 80 0 chr11 21499021 21499184 -127284288 + (TA)n Simple_repeat Simple_repeat 1 176 0 569 121 58 17 chr11 21499221 21499394 -127284078 + (TA)n Simple_repeat Simple_repeat 1 180 0 305 211 56 33 chr11 21499401 21499491 -127283981 - L1MC4 LINE L1 -1339 6703 6612 338 181 38 0 chr11 21499497 21499602 -127283870 + (TA)n Simple_repeat Simple_repeat 2 110 0 235 239 0 54 chr11 21499602 21499694 -127283778 - L1MC4 LINE L1 -1340 6702 6616 347 184 27 41 chr11 21500597 21500725 -127282747 - MIR SINE MIR -50 212 88 2331 80 3 3 chr11 21500743 21501042 -127282430 - AluY SINE Alu -12 299 1 415 296 17 9 chr11 21501157 21501272 -127282200 + L2 LINE L2 3198 3313 0 421 290 0 10 chr11 21501378 21501478 -127281994 - MIR SINE MIR -108 154 56 196 333 148 0 chr11 21501785 21501866 -127281606 - MIR SINE MIR -98 164 72 205 176 0 0 chr11 21502840 21502874 -127280598 + (TG)n Simple_repeat Simple_repeat 2 35 0 213 339 18 0 chr11 21503621 21503677 -127279795 - L2 LINE L2 -19 3253 3197 611 287 91 23 chr11 21504327 21504592 -127278880 + MLT1I LTR MaLR 100 382 -27 585 312 85 68 chr11 21505253 21505827 -127277645 - MLT1K LTR MaLR 0 588 5 272 301 146 24 chr11 21505887 21506010 -127277462 + MIR3 SINE MIR 6 143 -65 235 317 208 0 chr11 21506091 21506192 -127277280 - MIR3 SINE MIR -45 163 42 247 276 86 29 chr11 21506491 21506596 -127276876 + MIR SINE MIR 2 112 -150 440 375 92 19 chr11 21506915 21507438 -127276034 + L2 LINE L2 2334 2894 -420 183 300 0 33 chr11 21507701 21507761 -127275711 + L2 LINE L2 3242 3299 -14 516 268 76 13 chr11 21507795 21507952 -127275520 + MIR SINE MIR 31 197 -65 716 205 70 60 chr11 21509992 21510177 -127273295 - MER5A DNA MER1_type -2 187 1 697 266 34 34 chr11 21510759 21510835 -127272637 + MIR SINE MIR 25 100 -162 2656 91 13 11 chr11 21510835 21511207 -127272265 - THE1C LTR MaLR -2 373 1 697 266 34 34 chr11 21511207 21511337 -127272135 + MIR SINE MIR 99 231 -31 301 277 0 43 chr11 21511822 21511916 -127271556 - L1MC4 LINE L1 -1337 6705 6616 232 213 100 0 chr11 21511934 21512014 -127271458 - L1MC4 LINE L1 -1339 6703 6616 2166 89 45 3 chr11 21512073 21512365 -127271107 - AluY SINE Alu -7 304 1 376 283 0 58 chr11 21512402 21512522 -127270950 + MIR SINE MIR 31 143 -119 348 296 51 0 chr11 21512541 21512639 -127270833 - MIR SINE MIR -140 122 20 2425 66 0 16 chr11 21513188 21513493 -127269979 + AluY SINE Alu 1 300 -11 367 299 85 30 chr11 21514886 21515050 -127268422 - MIR SINE MIR -70 192 20 180 0 0 0 chr11 21515469 21515489 -127267983 + (A)n Simple_repeat Simple_repeat 1 20 0 276 247 52 13 chr11 21515901 21515978 -127267494 - MIR3 SINE MIR -25 183 104 186 292 21 83 chr11 21515969 21516065 -127267407 + MIR SINE MIR 36 125 -83 * 2081 78 4 11 chr11 21516187 21516457 -127267015 - AluSc SINE Alu -8 301 34 201 351 0 0 chr11 21516635 21516692 -127266780 + L2 LINE L2 3034 3090 -182 2102 140 6 26 chr11 21517003 21517354 -127266118 + MER2 DNA MER2_type 1 344 0 2071 91 24 11 chr11 21518777 21519064 -127264408 + AluSg SINE Alu 1 291 -19 1014 191 18 28 chr11 21520889 21521172 -127262300 + L1MD3 LINE L1 7715 7994 -1 1715 172 60 0 chr11 21521187 21521472 -127262000 + AluJo SINE Alu 4 305 -7 22 0 0 0 chr11 21521474 21521496 -127261976 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr11 21521598 21521634 -127261838 + AT_rich Low_complexity Low_complexity 1 36 0 717 22 0 0 chr11 21523665 21523754 -127259718 + L1PA2 LINE L1 6065 6153 -2 276 146 0 0 chr11 21524317 21524358 -127259114 - 5S rRNA rRNA -80 41 1 670 47 0 0 chr11 21524358 21524443 -127259029 - 5S rRNA rRNA -2 119 35 235 301 125 22 chr11 21525427 21525563 -127257909 - LTR16B LTR ERVL -269 195 46 25 65 0 0 chr11 21526435 21526481 -127256991 + AT_rich Low_complexity Low_complexity 1 46 0 279 262 97 58 chr11 21526571 21526674 -127256798 - L2 LINE L2 -8 3264 3158 385 356 83 11 chr11 21526923 21527103 -127256369 - MIR3 SINE MIR -10 198 6 33 0 0 0 chr11 21527250 21527283 -127256189 + AT_rich Low_complexity Low_complexity 1 33 0 259 295 105 19 chr11 21527646 21527751 -127255721 + L2 LINE L2 3141 3254 -18 36 53 0 0 chr11 21527805 21527862 -127255610 + AT_rich Low_complexity Low_complexity 1 57 0 24 0 0 0 chr11 21528302 21528326 -127255146 + AT_rich Low_complexity Low_complexity 1 24 0 470 285 65 48 chr11 21529356 21529542 -127253930 + MIR SINE MIR 4 192 -70 1162 181 209 17 chr11 21529611 21529970 -127253502 + MSTC LTR MaLR 1 428 0 339 78 0 0 chr11 21530854 21530905 -127252567 + (CA)n Simple_repeat Simple_repeat 2 52 0 392 318 93 0 chr11 21531450 21531601 -127251871 - MIR3 SINE MIR -10 198 34 295 357 48 8 chr11 21532776 21532902 -127250570 - L2 LINE L2 0 3272 3142 287 262 135 29 chr11 21533633 21533877 -127249595 - HAL1 LINE L1 -49 2458 2189 210 347 93 20 chr11 21533987 21534137 -127249335 + MIR SINE MIR 57 217 -45 732 282 117 43 chr11 21534764 21535158 -127248314 - LTR16A LTR ERVL 0 450 28 2888 199 8 72 chr11 21535967 21536705 -127246767 - LTR8 LTR ERV1 0 691 1 1924 154 76 19 chr11 21537064 21537487 -127245985 - L1MC3 LINE L1 0 7785 7339 581 135 36 0 chr11 21537484 21537595 -127245877 - L1MC3 LINE L1 -779 7006 6892 * 308 318 103 0 chr11 21538112 21538219 -127245253 + L2 LINE L2 3154 3271 -1 208 357 20 77 chr11 21539881 21540185 -127243287 + L2 LINE L2 2776 3060 -212 361 303 34 25 chr11 21540333 21540452 -127243020 + MIR SINE MIR 8 127 -135 355 303 38 15 chr11 21540583 21540715 -127242757 + MLT2E LTR ERVL 38 172 -456 212 382 24 0 chr11 21541396 21541519 -127241953 + L2 LINE L2 2866 2991 -281 456 285 11 37 chr11 21542514 21542704 -127240768 + MIR SINE MIR 4 189 -65 986 207 5 28 chr11 21542986 21543203 -127240269 + MER20 DNA MER1_type 4 215 -4 596 259 68 76 chr11 21543439 21543690 -127239782 + MIR SINE MIR 12 260 -2 333 0 0 0 chr11 21544490 21544527 -127238945 + (CA)n Simple_repeat Simple_repeat 2 38 0 1088 161 20 5 chr11 21545389 21545588 -127237884 - MER20 DNA MER1_type -7 212 11 354 315 8 0 chr11 21545724 21545851 -127237621 - MER94 DNA DNA -6 128 1 235 186 29 71 chr11 21545881 21545951 -127237521 - MIR SINE MIR -124 138 72 366 297 132 11 chr11 21546127 21546337 -127237135 + MIR SINE MIR 15 255 -7 274 270 27 14 chr11 21546708 21546782 -127236690 + MIR3 SINE MIR 83 157 -51 240 237 35 26 chr11 21546919 21547033 -127236439 + L1ME4a LINE L1 6002 6116 -5 345 250 142 8 chr11 21547980 21548100 -127235372 + MIR SINE MIR 127 262 0 284 281 123 0 chr11 21548429 21548543 -127234929 - L2 LINE L2 0 3272 3145 585 256 68 32 chr11 21548695 21548945 -127234527 - MIR SINE MIR -1 261 3 2336 272 126 26 chr11 21549023 21550157 -127233315 + L2 LINE L2 2059 3313 0 513 287 22 22 chr11 21550159 21550340 -127233132 - MIR SINE MIR -17 245 65 531 0 0 0 chr11 21550761 21550820 -127232652 + (TTTAG)n Simple_repeat Simple_repeat 5 63 0 413 303 17 25 chr11 21551666 21551785 -127231687 - MER5B DNA MER1_type -60 118 1 424 129 0 0 chr11 21552685 21552747 -127230725 - MER57B LTR ERV1 -372 62 1 207 100 0 0 chr11 21552960 21552990 -127230482 + (CACCAT)n Simple_repeat Simple_repeat 4 33 0 183 100 0 0 chr11 21554091 21554121 -127229351 + (T)n Simple_repeat Simple_repeat 1 30 0 238 206 49 69 chr11 21554245 21554347 -127229125 - L1ME4a LINE L1 -67 6054 5955 584 211 65 0 chr11 21554377 21554500 -127228972 - FLAM_A SINE Alu -2 131 1 533 293 44 4 chr11 21554571 21554800 -127228672 - L1ME4a LINE L1 -245 5876 5639 260 289 41 21 chr11 21554956 21555053 -127228419 + MIR SINE MIR 66 164 -98 24 32 0 0 chr11 21555185 21555216 -127228256 + AT_rich Low_complexity Low_complexity 1 31 0 1986 118 18 4 chr11 21555245 21555574 -127227898 + AluSx SINE Alu 1 333 0 1989 125 7 4 chr11 21555858 21556165 -127227307 - AluSg SINE Alu 0 308 1 409 261 91 8 chr11 21556520 21556773 -127226699 - L1MEc LINE L1 -4839 1471 1198 282 100 0 50 chr11 21556767 21556827 -127226645 - L1PA15 LINE L1 -3 6162 6106 * 4209 101 5 9 chr11 21556824 21557481 -127225991 - L1PA13 LINE L1 -117 6046 5393 1755 186 5 0 chr11 21557478 21557855 -127225617 - L1PA13 LINE L1 -982 5164 4786 * 10575 170 23 8 chr11 21557855 21559991 -127223481 + L1PA13 LINE L1 2605 4774 -1372 473 262 88 55 chr11 21559993 21560213 -127223259 - L1MEc LINE L1 -4943 1176 965 249 57 0 0 chr11 21560213 21560248 -127223224 + (CA)n Simple_repeat Simple_repeat 1 35 0 473 262 88 55 chr11 21560248 21560553 -127222919 - L1MEc LINE L1 -5154 965 634 707 208 25 6 chr11 21560566 21560725 -127222747 + MER3 DNA MER1_type 1 162 -47 979 270 89 62 chr11 21560759 21561367 -127222105 - L1MEc LINE L1 -5492 627 4 259 252 145 38 chr11 21562057 21562188 -127221284 + L2 LINE L2 3017 3161 -152 360 194 14 14 chr11 21562219 21562291 -127221181 + MER5C DNA MER1_type 8 79 -245 2271 119 0 10 chr11 21562653 21562964 -127220508 - AluSx SINE Alu -4 308 1 626 274 117 33 chr11 21563447 21563866 -127219606 - L1ME4a LINE L1 -1 6120 5667 187 364 23 45 chr11 21564615 21564747 -127218725 + MIR SINE MIR 16 144 -64 24 32 0 0 chr11 21564795 21564826 -127218646 + AT_rich Low_complexity Low_complexity 1 31 0 2171 292 146 50 chr11 21566657 21568857 -127214615 - L2 LINE L2 0 3313 718 375 183 0 117 chr11 21568946 21569083 -127214389 - MER103 DNA DNA 0 166 46 21 36 0 0 chr11 21569088 21569116 -127214356 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr11 21569245 21569273 -127214199 + AT_rich Low_complexity Low_complexity 1 28 0 336 324 43 57 chr11 21569313 21569594 -127213878 - L1 LINE L1 -1631 4515 4239 1614 176 0 47 chr11 21570142 21570493 -127212979 - AluJb SINE Alu 0 339 3 22 88 0 0 chr11 21570805 21570862 -127212610 + AT_rich Low_complexity Low_complexity 1 57 0 1017 300 36 46 chr11 21572378 21572795 -127210677 - LTR16A LTR ERVL -14 436 24 1721 115 0 0 chr11 21573160 21573394 -127210078 - AluSx SINE Alu -16 296 63 418 306 0 0 chr11 21574193 21574301 -127209171 + MIR3 SINE MIR 99 206 -2 3409 107 6 2 chr11 21574510 21575006 -127208466 + L1PB1 LINE L1 5639 6136 -15 22 0 0 0 chr11 21575037 21575059 -127208413 + AT_rich Low_complexity Low_complexity 1 22 0 1223 267 120 24 chr11 21575248 21575998 -127207474 - L2 LINE L2 -1 3312 2496 477 252 120 45 chr11 21576088 21576422 -127207050 - L2 LINE L2 -181 3132 2776 2724 49 0 0 chr11 21576604 21576931 -127206541 - L1PA7 LINE L1 -5 6149 5823 385 255 135 87 chr11 21577496 21578281 -127205191 - L1ME4a LINE L1 -9 6112 5290 402 296 164 48 chr11 21578302 21579106 -127204366 - L1ME4a LINE L1 -920 5226 4330 509 315 76 13 chr11 21579465 21579703 -127203769 - MIR SINE MIR -8 254 2 327 321 82 41 chr11 21579843 21580039 -127203433 + MIR3 SINE MIR 3 206 -2 420 314 131 0 chr11 21580248 21580401 -127203071 - MIR3 SINE MIR -3 205 33 567 299 108 40 chr11 21580574 21581177 -127202295 + L1MC4a LINE L1 5258 5901 -1907 219 229 0 21 chr11 21582570 21582618 -127200854 + L2 LINE L2 2992 3038 -234 230 248 26 115 chr11 21582709 21582822 -127200650 + L2 LINE L2 3200 3302 -11 629 240 36 57 chr11 21583660 21583852 -127199620 + MIR SINE MIR 29 216 -46 1528 144 23 107 chr11 21584166 21584513 -127198959 - AluYb8 SINE Alu 0 318 1 671 347 3 45 chr11 21584601 21584938 -127198534 - L2 LINE L2 -31 3282 2960 288 276 153 0 chr11 21584956 21585054 -127198418 + MIR SINE MIR 35 147 -115 1027 190 56 36 chr11 21585533 21585861 -127197611 + MER33 DNA MER1_type 1 324 0 1604 260 83 89 chr11 21586081 21586274 -127197198 - MER21B LTR ERV1 -149 714 521 1791 167 21 0 chr11 21586274 21586473 -127196999 - AluSx SINE Alu 0 312 123 180 111 0 0 chr11 21586473 21586500 -127196972 + (TG)n Simple_repeat Simple_repeat 2 28 0 1791 167 21 0 chr11 21586500 21586626 -127196846 - AluSx SINE Alu -189 123 1 1604 260 83 89 chr11 21586626 21587129 -127196343 - MER21B LTR ERV1 -342 521 22 1236 290 83 34 chr11 21587187 21587981 -127195491 - L2 LINE L2 0 3313 2481 329 308 76 27 chr11 21587988 21588173 -127195299 - L2 LINE L2 -484 2830 2637 315 248 99 41 chr11 21589929 21590050 -127193422 + MIR SINE MIR 20 147 -115 372 190 25 165 chr11 21590055 21590152 -127193320 - L2 LINE L2 -2 3311 3202 2034 129 0 14 chr11 21590152 21590439 -127193033 + AluSx SINE Alu 7 289 -23 276 30 0 0 chr11 21590445 21590478 -127192994 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 372 190 25 165 chr11 21590478 21590531 -127192941 - L2 LINE L2 -116 3197 3176 22 0 0 0 chr11 21590621 21590643 -127192829 + AT_rich Low_complexity Low_complexity 1 22 0 2346 113 0 0 chr11 21591229 21591538 -127191934 + AluSx SINE Alu 1 309 -3 578 297 179 0 chr11 21591705 21591917 -127191555 - MIR SINE MIR 0 262 13 1123 71 0 7 chr11 21592629 21592783 -127190689 + L1PA11 LINE L1 6022 6174 0 23 33 0 0 chr11 21593116 21593146 -127190326 + AT_rich Low_complexity Low_complexity 1 30 0 292 324 9 38 chr11 21593259 21593364 -127190108 + MIR SINE MIR 20 121 -141 464 259 147 12 chr11 21594545 21594715 -127188757 + MIR SINE MIR 6 198 -64 226 217 43 14 chr11 21594815 21594884 -127188588 + MIR SINE MIR 179 249 -13 305 186 34 0 chr11 21597148 21597207 -127186265 - L2 LINE L2 -217 3055 2995 491 228 30 0 chr11 21597615 21597716 -127185756 + MER5A DNA MER1_type 9 112 -77 187 306 19 83 chr11 21597803 21597911 -127185561 + MER5A DNA MER1_type 16 116 -73 407 315 16 8 chr11 21598035 21598162 -127185310 - MER5B DNA MER1_type -1 177 50 260 278 0 42 chr11 21598208 21598280 -127185192 + MER5B DNA MER1_type 110 178 0 1051 146 195 71 chr11 21598944 21599211 -127184261 - AluJb SINE Alu -2 300 1 2507 134 23 28 chr11 21600091 21600525 -127182947 + MSTB1 LTR MaLR 1 432 0 2299 109 0 0 chr11 21600939 21601243 -127182229 + AluSx SINE Alu 1 304 -8 198 174 0 0 chr11 21602109 21602155 -127181317 + (CATA)n Simple_repeat Simple_repeat 4 49 0 24 0 0 0 chr11 21602387 21602411 -127181061 + AT_rich Low_complexity Low_complexity 1 24 0 230 281 99 42 chr11 21602561 21602946 -127180526 + L1M4 LINE L1 2311 2717 -3429 327 256 12 0 chr11 21603542 21603624 -127179848 - MIR SINE MIR -14 248 166 1067 281 48 33 chr11 21603889 21604366 -127179106 - L1MC4a LINE L1 -1872 5936 5449 255 61 0 0 chr11 21604366 21604399 -127179073 + (CA)n Simple_repeat Simple_repeat 2 34 0 1067 281 48 33 chr11 21604399 21604440 -127179032 - L1MC4a LINE L1 -2359 5449 5410 832 349 213 10 chr11 21604520 21605300 -127178172 + L2 LINE L2 1785 2722 -592 286 254 12 98 chr11 21605334 21605483 -127177989 - MIR SINE MIR -66 196 3 180 396 70 21 chr11 21605985 21606172 -127177300 + L2 LINE L2 2659 2854 -460 237 254 18 0 chr11 21606869 21606924 -127176548 - MIR SINE MIR -77 131 76 313 339 27 9 chr11 21607518 21607630 -127175842 + MER91B DNA MER1_type 36 149 -41 259 294 135 16 chr11 21607821 21607947 -127175525 + MIR SINE MIR 121 261 -1 781 296 50 0 chr11 21608343 21608583 -127174889 + MIR SINE MIR 11 262 0 351 307 129 7 chr11 21608597 21608737 -127174735 - L2 LINE L2 -1 3312 3156 450 354 122 8 chr11 21608768 21608831 -127174641 - L2 LINE L2 -235 3037 2983 1461 200 33 20 chr11 21608831 21609131 -127174341 + AluJo SINE Alu 3 306 -6 450 354 122 8 chr11 21609131 21609452 -127174020 - L2 LINE L2 -289 2983 2614 2224 84 0 26 chr11 21610306 21610616 -127172856 - AluY SINE Alu -9 302 1 256 283 0 0 chr11 21611181 21611234 -127172238 + MER58A DNA MER1_type 2 54 -170 738 256 64 0 chr11 21611262 21611434 -127172038 + MER58A DNA MER1_type 42 224 0 423 0 0 0 chr11 21611536 21611583 -127171889 + (TG)n Simple_repeat Simple_repeat 2 48 0 226 296 182 0 chr11 21611864 21611952 -127171520 - MIR SINE MIR -133 129 26 295 280 65 24 chr11 21613022 21613190 -127170282 - MER89 LTR ERV1 -3 556 382 195 301 14 14 chr11 21613963 21614036 -127169436 + MIR SINE MIR 25 97 -111 379 309 176 19 chr11 21614355 21614565 -127168907 + MIR SINE MIR 20 262 0 894 275 17 8 chr11 21615748 21615984 -127167488 + MIR SINE MIR 6 243 -19 529 267 82 5 chr11 21616513 21616708 -127166764 + MER63A DNA MER1_type 1 210 0 23 0 0 0 chr11 21616814 21616837 -127166635 + AT_rich Low_complexity Low_complexity 1 23 0 2147 126 48 28 chr11 21617020 21617377 -127166095 - THE1B LTR MaLR 0 364 1 11426 97 13 2 chr11 21617377 21618939 -127164533 - THE1B-int LTR MaLR 0 1580 1 2095 110 52 52 chr11 21618939 21619086 -127164386 - THE1B LTR MaLR 0 364 218 2172 138 3 0 chr11 21619086 21619383 -127164089 - AluSq SINE Alu -13 300 3 2095 110 52 52 chr11 21619383 21619599 -127163873 - THE1B LTR MaLR -145 219 1 560 341 102 25 chr11 21619693 21620124 -127163348 + L2 LINE L2 219 682 -2632 1577 166 57 24 chr11 21620197 21620493 -127162979 - AluJb SINE Alu -6 306 1 1100 212 145 50 chr11 21620747 21621229 -127162243 - LTR10B LTR ERV1 -5 542 15 24 0 0 0 chr11 21622433 21622457 -127161015 + AT_rich Low_complexity Low_complexity 1 24 0 507 17 0 0 chr11 21622669 21622729 -127160743 + (CA)n Simple_repeat Simple_repeat 2 61 0 333 307 227 0 chr11 21623075 21623238 -127160234 - MIR SINE MIR -11 251 52 466 168 10 10 chr11 21623353 21623454 -127160018 - L1MB8 LINE L1 0 6178 6078 819 179 19 71 chr11 21623454 21623498 -127159974 - L1MB4 LINE L1 -6 6174 6129 1835 162 0 10 chr11 21623498 21623794 -127159678 - AluSx SINE Alu -19 293 1 819 179 19 71 chr11 21623794 21623954 -127159518 - L1MB4 LINE L1 -51 6129 5979 968 163 22 11 chr11 21623985 21624163 -127159309 + L1M3 LINE L1 5554 5733 -447 222 37 0 0 chr11 21624299 21624326 -127159146 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 7254 35 0 0 chr11 21624328 21625325 -127158147 - L1PA4 LINE L1 -13 6142 5141 1710 142 58 18 chr11 21625328 21625625 -127157847 - AluSq SINE Alu 0 308 1 714 212 52 65 chr11 21625631 21625862 -127157610 - MER106A DNA MER1_type 0 236 9 803 245 51 31 chr11 21625862 21626119 -127157353 + MIR SINE MIR 1 262 0 478 319 13 19 chr11 21626923 21627080 -127156392 + MIR SINE MIR 107 262 0 1421 200 108 3 chr11 21628225 21628560 -127154912 - MLT1A2 LTR MaLR -4 370 1 2811 181 11 65 chr11 21628591 21629238 -127154234 - LTR9 LTR ERV1 0 612 1 672 107 0 0 chr11 21629241 21629344 -127154128 + (TCCCC)n Simple_repeat Simple_repeat 2 104 0 297 218 10 20 chr11 21629452 21629553 -127153919 + CT-rich Low_complexity Low_complexity 4 103 0 888 269 25 21 chr11 21629782 21630020 -127153452 + MIR SINE MIR 23 261 -1 183 156 0 0 chr11 21630189 21630221 -127153251 + GA-rich Low_complexity Low_complexity 1 32 0 359 272 59 59 chr11 21630403 21630539 -127152933 + MIR3 SINE MIR 15 150 -58 1429 153 84 4 chr11 21630591 21630865 -127152607 - L1MC1 LINE L1 -18 6315 6020 432 292 36 22 chr11 21631370 21631507 -127151965 - MIR3 SINE MIR -49 159 21 359 296 127 73 chr11 21632577 21632797 -127150675 + MIR SINE MIR 7 238 -24 311 300 0 22 chr11 21634376 21634466 -127149006 + L2 LINE L2 2654 2741 -573 288 390 58 6 chr11 21634582 21634754 -127148718 + L2 LINE L2 2901 3081 -191 546 289 58 67 chr11 21635073 21635419 -127148053 - MLT1I LTR MaLR -57 352 10 396 323 82 9 chr11 21635429 21635649 -127147823 + L2 LINE L2 708 943 -2371 225 186 102 0 chr11 21635653 21635712 -127147760 - LTR16A LTR ERVL 0 450 386 490 343 12 0 chr11 21636083 21636255 -127147217 + MIR SINE MIR 48 221 -41 249 250 125 23 chr11 21636283 21636371 -127147101 - MIR SINE MIR -74 134 38 396 0 0 0 chr11 21638913 21638957 -127144515 + (CA)n Simple_repeat Simple_repeat 2 45 0 2040 333 95 29 chr11 21639497 21641021 -127142451 + L2 LINE L2 1685 3308 -5 914 330 23 6 chr11 21641216 21641567 -127141905 - MLT1I LTR MaLR -47 362 6 214 162 0 0 chr11 21642500 21642537 -127140935 + (ATTG)n Simple_repeat Simple_repeat 2 38 0 395 179 98 71 chr11 21644618 21644730 -127138742 - MER5B DNA MER1_type -63 115 1 233 56 0 28 chr11 21646043 21646079 -127137393 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 221 306 190 0 chr11 21646224 21646345 -127137127 + MIR SINE MIR 48 191 -71 601 300 93 49 chr11 21646356 21646903 -127136569 - MLT1L LTR MaLR 0 615 45 345 82 0 0 chr11 21646903 21646952 -127136520 + (TG)n Simple_repeat Simple_repeat 2 50 0 644 256 97 38 chr11 21647155 21647504 -127135968 + L1ME4a LINE L1 5501 5869 -252 24 0 0 0 chr11 21647863 21647887 -127135585 + AT_rich Low_complexity Low_complexity 1 24 0 1506 180 104 9 chr11 21648033 21648185 -127135287 - MLT1A1 LTR MaLR 0 365 229 2369 88 7 0 chr11 21648185 21648482 -127134990 - AluSp SINE Alu -14 299 1 1506 180 104 9 chr11 21648482 21648656 -127134816 - MLT1A1 LTR MaLR -136 229 8 387 295 9 0 chr11 21649521 21649626 -127133846 + MIR SINE MIR 157 262 0 208 339 58 41 chr11 21649620 21649741 -127133731 - MIR SINE MIR -109 153 31 * 494 110 0 66 chr11 21649850 21649963 -127133509 + L1PB1 LINE L1 6060 6166 0 284 289 3 16 chr11 21650010 21650120 -127133352 + MIR SINE MIR 19 127 -81 1125 175 8 85 chr11 21650905 21651151 -127132321 + AluJo SINE Alu 11 237 -75 480 174 0 0 chr11 21651154 21651246 -127132226 + GA-rich Low_complexity Low_complexity 2 93 0 3609 153 14 39 chr11 21652814 21653533 -127129939 + L1MB3 LINE L1 5480 6180 -3 27 0 0 0 chr11 21653675 21653702 -127129770 + AT_rich Low_complexity Low_complexity 1 27 0 26 64 0 0 chr11 21654779 21654826 -127128646 + AT_rich Low_complexity Low_complexity 1 47 0 393 275 74 58 chr11 21654953 21655142 -127128330 + MIR3 SINE MIR 17 208 0 261 146 0 0 chr11 21655764 21655812 -127127660 + (TG)n Simple_repeat Simple_repeat 1 48 0 7212 180 78 77 chr11 21655856 21657608 -127125864 - MER52A LTR ERV1 0 1755 1 352 291 133 30 chr11 21657617 21657782 -127125690 + MIR3 SINE MIR 21 202 -6 229 353 29 10 chr11 21657773 21657875 -127125597 - L2 LINE L2 -153 3119 3016 * 226 319 117 32 chr11 21658137 21658231 -127125241 - L2 LINE L2 -2 3311 3210 459 294 71 6 chr11 21658433 21658603 -127124869 + MIR SINE MIR 74 254 -8 489 308 58 39 chr11 21659066 21659274 -127124198 + MIR SINE MIR 22 233 -29 184 200 50 0 chr11 21659311 21659351 -127124121 + L2 LINE L2 3256 3297 -16 746 313 80 16 chr11 21659529 21660011 -127123461 - L2 LINE L2 -93 3220 2716 201 39 0 0 chr11 21660321 21660347 -127123125 + (CAT)n Simple_repeat Simple_repeat 2 27 0 248 275 83 42 chr11 21661717 21661837 -127121635 + MIR SINE MIR 73 197 -65 30 45 0 0 chr11 21662256 21662300 -127121172 + AT_rich Low_complexity Low_complexity 1 44 0 1058 263 48 35 chr11 21662882 21663258 -127120214 + L2 LINE L2 2921 3301 -12 421 303 36 12 chr11 21663326 21663491 -127119981 - MLT1L LTR MaLR -10 605 437 316 261 104 9 chr11 21664369 21664484 -127118988 - MIR3 SINE MIR -46 162 37 242 167 0 0 chr11 21665013 21665055 -127118417 + MIR SINE MIR 81 122 -140 388 0 0 0 chr11 21665318 21665361 -127118111 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 2091 124 0 0 chr11 21665361 21665644 -127117828 - AluSq SINE Alu -1 325 1 180 186 23 23 chr11 21666337 21666380 -127117092 + MIR SINE MIR 111 153 -109 858 224 60 43 chr11 21668478 21668710 -127114762 + MIR SINE MIR 27 262 0 596 294 104 14 chr11 21668718 21668929 -127114543 - MIR SINE MIR -16 246 17 219 349 12 0 chr11 21669484 21669567 -127113905 + L2 LINE L2 3186 3269 -3 406 317 28 7 chr11 21669620 21669762 -127113710 + MIR SINE MIR 97 241 -21 273 340 64 21 chr11 21669856 21670044 -127113428 - LTR33 LTR ERVL -66 455 260 2066 128 0 3 chr11 21670338 21670628 -127112844 + AluSx SINE Alu 1 289 -23 512 237 20 7 chr11 21670777 21670929 -127112543 + MER103 DNA DNA 1 154 -12 2511 73 3 13 chr11 21671128 21671443 -127112029 + AluSp SINE Alu 1 312 -1 2190 128 22 27 chr11 21672863 21673229 -127110243 - THE1B LTR MaLR 0 364 1 709 277 30 131 chr11 21673248 21673677 -127109795 - L2 LINE L2 -5 3308 2923 363 217 6 121 chr11 21674210 21674341 -127109131 - MER5B DNA MER1_type -5 173 61 2003 163 119 13 chr11 21674341 21674728 -127108744 - MSTA LTR MaLR 0 428 1 363 217 6 121 chr11 21674728 21674753 -127108719 - MER5B DNA MER1_type -117 61 35 226 200 29 29 chr11 21674972 21675042 -127108430 + (TG)n Simple_repeat Simple_repeat 2 71 0 700 222 15 45 chr11 21675095 21675293 -127108179 + MIR SINE MIR 66 257 -5 249 186 0 0 chr11 21676883 21676926 -127106546 + (TG)n Simple_repeat Simple_repeat 1 43 0 562 239 8 31 chr11 21677003 21677133 -127106339 - L2 LINE L2 0 3272 3146 243 59 29 0 chr11 21677234 21677268 -127106204 + U2 snRNA snRNA 1 35 -153 381 252 138 38 chr11 21677277 21677436 -127106036 - MIR SINE MIR -81 181 7 380 329 36 14 chr11 21678007 21678147 -127105325 - L2 LINE L2 -1 3271 3129 233 348 155 37 chr11 21678556 21680323 -127103149 - L2 LINE L2 -656 2658 684 1940 135 0 34 chr11 21680388 21680685 -127102787 + AluSx SINE Alu 1 287 -25 240 281 0 0 chr11 21680685 21680774 -127102698 + L1MC4 LINE L1 6615 6703 -1339 645 267 70 0 chr11 21681253 21681425 -127102047 + MIR SINE MIR 2 185 -77 1888 178 42 31 chr11 21681446 21681975 -127101497 + MLT2A2 LTR ERVL 1 542 -12 181 240 80 0 chr11 21682494 21682544 -127100928 - MIR SINE MIR -140 122 69 23 33 0 0 chr11 21684232 21684262 -127099210 + AT_rich Low_complexity Low_complexity 1 30 0 405 0 0 0 chr11 21684577 21684622 -127098850 + (CA)n Simple_repeat Simple_repeat 2 46 0 2048 151 3 0 chr11 21684834 21685133 -127098339 + AluSx SINE Alu 1 300 -12 886 183 75 4 chr11 21685215 21685483 -127097989 - MER33 DNA MER1_type -37 287 1 2286 112 0 3 chr11 21685523 21685828 -127097644 - AluSc SINE Alu -5 304 1 390 217 104 0 chr11 21687049 21687155 -127096317 + MLT1B LTR MaLR 6 122 -268 1351 211 84 22 chr11 21687155 21687486 -127095986 - MLT1A2 LTR MaLR 0 593 24 983 195 58 27 chr11 21687513 21687774 -127095698 + MLT1B LTR MaLR 122 390 0 527 325 30 0 chr11 21688874 21689077 -127094395 + L2 LINE L2 2177 2385 -929 3250 122 0 36 chr11 21689083 21689338 -127094134 + L1MA3 LINE L1 5576 5839 -466 2117 128 27 0 chr11 21689338 21689634 -127093838 - AluSx SINE Alu -8 304 1 3250 122 0 36 chr11 21689634 21689962 -127093510 + L1MA3 LINE L1 5839 6138 -167 1010 119 23 6 chr11 21690015 21690191 -127093281 + L1MA3 LINE L1 6127 6305 0 182 405 0 0 chr11 21690226 21690305 -127093167 + L2 LINE L2 2376 2454 -860 904 329 19 62 chr11 21691249 21691732 -127091740 + L2 LINE L2 2852 3313 0 999 303 126 52 chr11 21691781 21692375 -127091097 - L3 LINE CR1 -87 1490 853 231 60 30 60 chr11 21694233 21694300 -127089172 + (TA)n Simple_repeat Simple_repeat 1 65 0 184 391 9 19 chr11 21694317 21694532 -127088940 - L3 LINE CR1 -714 863 651 347 237 110 17 chr11 21694897 21695070 -127088402 - L1ME4a LINE L1 -63 6058 5870 21 0 0 0 chr11 21696201 21696222 -127087250 + AT_rich Low_complexity Low_complexity 1 21 0 208 339 0 0 chr11 21696265 21696321 -127087151 - MIR SINE MIR -12 250 195 282 73 0 0 chr11 21696489 21696530 -127086942 + (TG)n Simple_repeat Simple_repeat 1 41 0 267 130 0 0 chr11 21697326 21697380 -127086092 + (TG)n Simple_repeat Simple_repeat 2 55 0 728 309 14 18 chr11 21697489 21697706 -127085766 - MIR SINE MIR 0 262 47 351 239 94 17 chr11 21697728 21697845 -127085627 + MER94 DNA DNA 1 126 -8 363 258 56 0 chr11 21699682 21699771 -127083701 + MIR SINE MIR 157 250 -12 227 139 0 0 chr11 21700398 21700434 -127083038 + MLT1B LTR MaLR 329 364 -26 5162 160 11 27 chr11 21700541 21701694 -127081778 - L1MA7 LINE L1 0 6291 5157 1645 199 11 0 chr11 21702075 21702357 -127081115 + AluJb SINE Alu 12 296 -16 325 186 59 108 chr11 21702916 21703018 -127080454 - MLT1H LTR MaLR 0 549 453 725 235 11 22 chr11 21703460 21703643 -127079829 - MER58A DNA MER1_type -15 209 29 409 95 0 168 chr11 21704823 21704918 -127078554 + MADE1 DNA Mariner 1 79 -1 204 314 59 39 chr11 21705028 21705130 -127078342 - MIR SINE MIR -148 114 11 886 234 14 29 chr11 21705507 21705716 -127077756 - MIR SINE MIR -39 223 18 2355 105 0 3 chr11 21705729 21706042 -127077430 + AluSx SINE Alu 1 312 0 638 253 166 25 chr11 21706063 21706558 -127076914 - LTR50 LTR ERVL -3 792 181 7278 45 2 0 chr11 21706660 21708267 -127075205 + L1PA4 LINE L1 4541 6151 -4 4126 212 57 13 chr11 21708270 21710467 -127073005 + L1MC1 LINE L1 3912 6193 -140 4351 189 67 65 chr11 21710467 21712023 -127071449 + L1M1 LINE L1 13 1875 -5690 1795 142 16 14 chr11 21712022 21712533 -127070939 + L1MA2 LINE L1 4957 5470 -746 * 298 196 0 0 chr11 21712533 21712584 -127070888 - AluSp SINE Alu -148 155 105 714 161 8 0 chr11 21712584 21712702 -127070770 + AluSg/x SINE Alu 179 297 -15 4952 133 20 2 chr11 21712702 21713531 -127069941 + L1MA2 LINE L1 5461 6304 0 30 0 0 0 chr11 21713531 21713561 -127069911 + AT_rich Low_complexity Low_complexity 1 30 0 603 219 15 0 chr11 21713566 21713703 -127069769 + L1MC1 LINE L1 6186 6324 -9 183 42 0 0 chr11 21715996 21716020 -127067452 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 423 0 0 0 chr11 21716593 21716640 -127066832 + (CA)n Simple_repeat Simple_repeat 2 48 0 738 256 64 0 chr11 21716742 21716914 -127066558 - MER58A DNA MER1_type 0 224 42 2221 91 0 25 chr11 21717561 21717880 -127065592 + AluY SINE Alu 1 311 0 833 250 161 23 chr11 21717901 21718508 -127064964 - LTR50 LTR ERVL -3 792 56 278 307 134 31 chr11 21718619 21718746 -127064726 + L2 LINE L2 3122 3261 -11 449 268 51 31 chr11 21719459 21719629 -127063843 + MIR3 SINE MIR 23 196 -12 2038 127 0 3 chr11 21719678 21719985 -127063487 - AluSx SINE Alu 0 306 1 22 0 0 0 chr11 21720289 21720311 -127063161 + AT_rich Low_complexity Low_complexity 1 22 0 276 175 0 0 chr11 21720488 21720551 -127062921 + (TCCA)n Simple_repeat Simple_repeat 2 64 0 2360 93 3 0 chr11 21720709 21721010 -127062462 - AluSq SINE Alu -11 302 1 456 274 62 0 chr11 21721030 21721176 -127062296 + MIR SINE MIR 88 242 -20 218 311 74 30 chr11 21721899 21722034 -127061438 - L3 LINE CR1 -392 1185 1045 328 328 63 50 chr11 21722289 21722506 -127060966 + MIR SINE MIR 13 231 -31 240 301 175 0 chr11 21723136 21723239 -127060233 - MIR3 SINE MIR -3 205 85 309 304 111 23 chr11 21723302 21723473 -127059999 + MIR SINE MIR 71 256 -6 29 0 0 0 chr11 21724010 21724039 -127059433 + AT_rich Low_complexity Low_complexity 1 29 0 395 275 76 0 chr11 21724463 21724634 -127058838 - L1ME3 LINE L1 -227 5935 5752 23 0 0 0 chr11 21724962 21724985 -127058487 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr11 21725097 21725120 -127058352 + AT_rich Low_complexity Low_complexity 1 23 0 2126 121 3 0 chr11 21725486 21725783 -127057689 + AluSx SINE Alu 1 298 -14 474 259 32 79 chr11 21726399 21726495 -127056977 + MIR SINE MIR 2 86 -176 1517 222 50 56 chr11 21726495 21726999 -127056473 + MLT1D LTR MaLR 1 501 -4 474 259 32 79 chr11 21726999 21727091 -127056381 + MIR SINE MIR 86 181 -81 27 29 0 0 chr11 21728879 21728913 -127054559 + AT_rich Low_complexity Low_complexity 1 34 0 583 214 69 38 chr11 21729804 21729963 -127053509 - MER5B DNA MER1_type 0 178 15 1029 203 0 11 chr11 21729990 21730177 -127053295 + MER5A DNA MER1_type 5 189 0 1343 177 38 38 chr11 21730921 21731238 -127052234 - MER33 DNA MER1_type -7 317 1 208 178 0 67 chr11 21731626 21731671 -127051801 - L2 LINE L2 -18 3254 3213 735 314 78 61 chr11 21731692 21732246 -127051226 + L2 LINE L2 2736 3299 -14 1972 120 36 23 chr11 21732286 21732594 -127050878 - AluSq SINE Alu -1 312 1 291 325 13 0 chr11 21732684 21732761 -127050711 - MIR SINE MIR -177 85 8 1529 254 84 25 chr11 21733298 21733888 -127049584 - MLT1G LTR MaLR 0 590 1 345 330 49 71 chr11 21734179 21734446 -127049026 + L2 LINE L2 2962 3222 -50 228 245 0 0 chr11 21734551 21734604 -127048868 + CT-rich Low_complexity Low_complexity 1 53 0 31059 100 15 25 chr11 21735061 21741129 -127042343 - L1PA7 LINE L1 0 6469 364 1347 259 77 5 chr11 21741467 21741896 -127041576 - MLT1C LTR MaLR 0 467 8 449 329 34 19 chr11 21742582 21742789 -127040683 - MIR SINE MIR -6 256 47 187 349 0 15 chr11 21743209 21743275 -127040197 - MIR3 SINE MIR -133 75 11 921 193 17 73 chr11 21743313 21743613 -127039859 - L1MA9 LINE L1 -30 6282 6000 26 64 0 0 chr11 21743833 21743880 -127039592 + AT_rich Low_complexity Low_complexity 1 47 0 215 61 30 0 chr11 21744729 21744762 -127038710 + (TA)n Simple_repeat Simple_repeat 1 34 0 456 264 8 0 chr11 21744998 21745123 -127038349 - L1MB7 LINE L1 -9 6175 6050 3489 194 30 12 chr11 21745250 21746090 -127037382 - L1MB7 LINE L1 -126 6058 5204 219 189 0 0 chr11 21746340 21746393 -127037079 + CT-rich Low_complexity Low_complexity 3 55 0 712 337 91 38 chr11 21746598 21747196 -127036276 - L2 LINE L2 -188 3084 2458 2158 123 0 7 chr11 21747225 21747526 -127035946 - AluSx SINE Alu -1 311 13 292 274 210 16 chr11 21747614 21747738 -127035734 + MIR SINE MIR 111 258 -4 2980 223 36 76 chr11 21748158 21749501 -127033971 + L1MD2 LINE L1 4024 5261 -1098 1213 194 13 0 chr11 21749501 21749733 -127033739 - MER46A DNA MER2_type 0 236 2 2980 223 36 76 chr11 21749733 21750148 -127033324 + L1MD2 LINE L1 5261 5691 -668 568 214 180 89 chr11 21750145 21750439 -127033033 + L1MD2 LINE L1 5928 6194 -165 * 2580 116 3 11 chr11 21750439 21750817 -127032655 + THE1C LTR MaLR 1 375 0 9919 135 35 4 chr11 21750817 21752350 -127031122 + THE1C-int LTR MaLR 1 1580 0 2307 152 11 11 chr11 21752350 21752725 -127030747 + THE1C LTR MaLR 1 375 0 568 214 180 89 chr11 21752725 21752755 -127030717 + L1MD2 LINE L1 6193 6284 -75 367 176 44 11 chr11 21752801 21752892 -127030580 + L1MD2 LINE L1 6253 6346 -13 13725 193 15 29 chr11 21753769 21755202 -127028270 - L1MA5 LINE L1 -10 7352 5901 1907 157 141 5 chr11 21755202 21755577 -127027895 - MSTA LTR MaLR -2 426 1 13725 193 15 29 chr11 21755577 21757107 -127026365 - L1MA5 LINE L1 -1461 5901 4351 1766 181 0 3 chr11 21757107 21757406 -127026066 - AluJb SINE Alu -14 298 1 13725 193 15 29 chr11 21757406 21757583 -127025889 - L1MA5 LINE L1 -3011 4351 4173 2270 77 6 52 chr11 21757583 21757908 -127025564 - AluY SINE Alu -1 310 1 13725 193 15 29 chr11 21757908 21759647 -127023825 - L1MA5 LINE L1 -3189 4173 2552 1228 213 80 7 chr11 21759647 21759934 -127023538 - AluJb SINE Alu -4 308 1 13725 193 15 29 chr11 21759934 21760379 -127023093 - L1MA5 LINE L1 -4810 2552 2102 2065 275 59 29 chr11 21760390 21761055 -127022417 - L1MA5 LINE L1 -6524 685 1 228 143 0 0 chr11 21761144 21761186 -127022286 + (TAG)n Simple_repeat Simple_repeat 1 42 0 935 272 20 8 chr11 21761198 21761448 -127022024 - MIR SINE MIR -3 259 7 455 314 63 11 chr11 21761824 21761999 -127021473 + MIR SINE MIR 45 228 -34 522 244 16 0 chr11 21762660 21762787 -127020685 - MER94 DNA DNA 0 134 6 22 35 0 0 chr11 21762900 21762929 -127020543 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 21763342 21763363 -127020109 + AT_rich Low_complexity Low_complexity 1 21 0 690 98 25 0 chr11 21764089 21764211 -127019261 + (TCCCC)n Simple_repeat Simple_repeat 5 129 0 742 269 10 34 chr11 21764253 21764461 -127019011 - MER20 DNA MER1_type -15 204 2 335 210 74 37 chr11 21764521 21764602 -127018870 + MIR SINE MIR 71 154 -108 539 280 129 41 chr11 21765337 21765779 -127017693 + L2 LINE L2 2748 3270 -43 320 325 61 0 chr11 21765780 21765894 -127017578 + L2 LINE L2 3183 3303 -10 514 180 34 0 chr11 21765968 21766057 -127017415 - MIR SINE MIR -90 172 81 516 305 43 44 chr11 21766145 21766501 -127016971 + L1MC/D LINE L1 5455 5806 -335 233 218 0 18 chr11 21766527 21766582 -127016890 + (CA)n Simple_repeat Simple_repeat 2 55 0 1450 139 27 106 chr11 21767579 21767910 -127015562 + AluYb8 SINE Alu 1 305 -13 1818 167 7 0 chr11 21768206 21768512 -127014960 - AluSx SINE Alu -3 309 2 261 320 39 29 chr11 21768775 21768878 -127014594 - MIR SINE MIR -30 232 129 188 196 0 20 chr11 21768937 21768988 -127014484 + CT-rich Low_complexity Low_complexity 5 54 0 339 123 18 35 chr11 21769673 21769730 -127013742 - MLT1K LTR MaLR 0 588 533 * 1200 268 64 12 chr11 21769724 21770067 -127013405 - MER45C DNA AcHobo -5 948 588 192 77 0 0 chr11 21770466 21770492 -127012980 + (GGGAGA)n Simple_repeat Simple_repeat 5 30 0 190 345 30 60 chr11 21771446 21771614 -127011858 + L2 LINE L2 2755 2917 -397 339 278 11 0 chr11 21773144 21773234 -127010238 - L2 LINE L2 -6 3307 3217 * 1337 314 85 23 chr11 21773229 21773889 -127009583 + L2 LINE L2 1918 2618 -696 184 313 10 50 chr11 21773902 21774001 -127009471 - L2 LINE L2 -1839 1475 1381 419 346 13 6 chr11 21774334 21774493 -127008979 + MIR SINE MIR 7 166 -96 464 344 26 0 chr11 21774505 21774656 -127008816 + MIR SINE MIR 107 261 -1 23 0 0 0 chr11 21777456 21777479 -127005993 + AT_rich Low_complexity Low_complexity 1 23 0 820 248 187 37 chr11 21777706 21778085 -127005387 - MLT1J2 LTR MaLR -14 436 1 212 221 78 65 chr11 21778949 21779026 -127004446 - MIR3 SINE MIR -11 197 120 343 247 11 0 chr11 21779203 21779292 -127004180 - MER33 DNA MER1_type 0 363 274 474 119 0 0 chr11 21779296 21779363 -127004109 - MER33 DNA MER1_type -244 80 14 21 0 0 0 chr11 21779388 21779409 -127004063 + AT_rich Low_complexity Low_complexity 1 21 0 242 287 103 11 chr11 21780150 21780237 -127003235 + MIR SINE MIR 48 142 -66 742 188 109 20 chr11 21780348 21780550 -127002922 + MIR SINE MIR 13 232 -30 187 317 55 55 chr11 21780583 21780728 -127002744 + L2 LINE L2 2720 2864 -450 388 263 29 26 chr11 21780797 21780989 -127002483 + MIR SINE MIR 6 243 -19 222 384 154 15 chr11 21781012 21781278 -127002194 + L2 LINE L2 2960 3262 -10 217 214 171 0 chr11 21781290 21781360 -127002112 + MIR SINE MIR 166 247 -15 559 237 40 20 chr11 21781665 21781817 -127001655 - MIR SINE MIR 0 262 108 1474 167 4 0 chr11 21782011 21782250 -127001222 - Tigger3(Golem) DNA MER2_type 0 3037 2798 405 61 0 0 chr11 21782250 21782299 -127001173 - THE1A LTR MaLR 0 355 307 5874 143 55 12 chr11 21782401 21782567 -127000905 - Tigger3b DNA MER2_type -1869 1159 1002 2262 108 70 3 chr11 21782567 21782908 -127000564 - THE1B LTR MaLR 0 364 1 5874 143 55 12 chr11 21782908 21783822 -126999650 - Tigger3b DNA MER2_type -2026 1002 33 1375 196 7 7 chr11 21783935 21784215 -126999257 + AluJb SINE Alu 1 280 -32 231 36 0 0 chr11 21784218 21784246 -126999226 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 508 270 191 63 chr11 21784508 21784937 -126998535 + MLT1K LTR MaLR 4 487 -101 530 313 123 9 chr11 21787876 21788103 -126995369 - MIR SINE MIR -5 257 5 222 294 230 8 chr11 21788978 21789104 -126994368 - MIR3 SINE MIR -18 190 37 475 330 30 30 chr11 21789246 21789446 -126994026 - MIR SINE MIR -43 219 20 228 298 141 41 chr11 21789466 21789587 -126993885 + MER94 DNA DNA 2 134 0 214 339 54 86 chr11 21789632 21789853 -126993619 - L2 LINE L2 -54 3218 3005 259 390 119 0 chr11 21791896 21792014 -126991458 + L2 LINE L2 3123 3254 -18 624 265 63 36 chr11 21792639 21792862 -126990610 - LTR16C LTR ERVL -12 479 251 300 297 20 0 chr11 21792933 21793034 -126990438 - LTR16C LTR ERVL -381 110 8 221 333 43 0 chr11 21794162 21794231 -126989241 + MIR SINE MIR 23 94 -168 1231 180 101 110 chr11 21794235 21794652 -126988820 - MLT2D LTR ERVL -1 413 1 318 358 98 45 chr11 21795004 21795403 -126988069 - L2 LINE L2 -15 3257 2838 307 258 157 0 chr11 21795874 21795963 -126987509 - L2 LINE L2 0 3313 3211 1400 101 14 0 chr11 21797062 21797270 -126986202 - L1PA13 LINE L1 0 6163 5953 757 208 139 5 chr11 21797366 21797568 -126985904 - MIR SINE MIR -32 230 2 2716 275 173 65 chr11 21797626 21799868 -126983604 - HAL1 LINE L1 -20 2487 4 279 71 0 0 chr11 21799943 21799985 -126983487 + (TG)n Simple_repeat Simple_repeat 2 43 0 271 318 194 0 chr11 21800066 21800195 -126983277 + MIR SINE MIR 2 155 -107 192 77 0 0 chr11 21800622 21800648 -126982824 + (TG)n Simple_repeat Simple_repeat 2 27 0 204 277 77 39 chr11 21802363 21802518 -126980954 + L2 LINE L2 1931 2091 -1223 25 0 0 0 chr11 21802689 21802714 -126980758 + AT_rich Low_complexity Low_complexity 1 25 0 321 333 28 21 chr11 21803551 21803695 -126979777 + L2 LINE L2 2176 2320 -994 1047 184 9 5 chr11 21803700 21803912 -126979560 - L1 LINE L1 -3773 2373 2161 * 8624 199 87 29 chr11 21803910 21805218 -126978254 + L1MCa LINE L1 132 1363 -5063 231 36 0 0 chr11 21805218 21805246 -126978226 + (TC)n Simple_repeat Simple_repeat 1 28 0 8624 199 87 29 chr11 21805246 21807789 -126975683 + L1MCa LINE L1 1363 4208 -2218 40655 50 2 0 chr11 21807793 21812847 -126970625 + L1P LINE L1 7 5069 -1077 811 61 0 10 chr11 21812947 21813046 -126970426 + AluY SINE Alu 30 127 -184 192 260 20 0 chr11 21813130 21813180 -126970292 + L2 LINE L2 3185 3235 -78 24 0 0 0 chr11 21813504 21813528 -126969944 + AT_rich Low_complexity Low_complexity 1 24 0 222 299 103 0 chr11 21813745 21813842 -126969630 - MIR SINE MIR -35 227 121 3244 101 11 0 chr11 21816201 21816665 -126966807 + L1PA7 LINE L1 5682 6150 -4 549 350 60 0 chr11 21817128 21817345 -126966127 - MIR SINE MIR -15 247 18 267 344 21 10 chr11 21817486 21817582 -126965890 - MIR SINE MIR -76 132 36 531 255 155 35 chr11 21817659 21817859 -126965613 - MIR SINE MIR -21 241 18 409 200 0 77 chr11 21818968 21819098 -126964374 + L1MA9 LINE L1 6193 6312 0 35 0 0 0 chr11 21819381 21819416 -126964056 + AT_rich Low_complexity Low_complexity 1 35 0 228 225 0 0 chr11 21819588 21819628 -126963844 - 5S rRNA rRNA -81 40 1 22 0 0 0 chr11 21819706 21819728 -126963744 + AT_rich Low_complexity Low_complexity 1 22 0 223 229 14 43 chr11 21820247 21820317 -126963155 + GA-rich Low_complexity Low_complexity 5 72 0 423 0 0 0 chr11 21821868 21821915 -126961557 + (TG)n Simple_repeat Simple_repeat 2 48 0 994 262 35 0 chr11 21822003 21822285 -126961187 - MER58B DNA MER1_type -21 320 29 448 322 79 40 chr11 21822314 21822433 -126961039 - L2 LINE L2 -71 3242 3129 189 0 0 0 chr11 21822433 21822454 -126961018 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 448 322 79 40 chr11 21822454 21822924 -126960548 - L2 LINE L2 -184 3129 2620 6903 62 0 0 chr11 21823106 21824131 -126959341 - L1PA5 LINE L1 -2 6152 5119 465 298 58 12 chr11 21824219 21824390 -126959082 - MIR SINE MIR -63 199 21 595 261 73 33 chr11 21824413 21824683 -126958789 - MLT1H1 LTR MaLR 0 555 249 1202 256 0 18 chr11 21825124 21825405 -126958067 + AluJo SINE Alu 1 276 -36 302 269 13 0 chr11 21825423 21825501 -126957971 - L1MC4 LINE L1 -1350 6692 6614 2242 137 7 81 chr11 21825687 21826133 -126957339 + L1M1 LINE L1 5342 5754 -549 901 197 65 90 chr11 21826155 21826465 -126957007 - MLT1A1 LTR MaLR -59 306 5 283 347 132 5 chr11 21826582 21826801 -126956671 - MIR SINE MIR -12 250 4 226 269 29 67 chr11 21826827 21826931 -126956541 + MIR SINE MIR 17 116 -92 203 313 122 8 chr11 21827008 21827139 -126956333 + L2 LINE L2 3047 3192 -121 235 192 25 50 chr11 21827986 21828106 -126955366 + (TA)n Simple_repeat Simple_repeat 1 117 0 350 293 35 57 chr11 21828126 21828355 -126955117 - L1ME LINE L1 -297 5824 5601 192 260 40 0 chr11 21828751 21828801 -126954671 + L2 LINE L2 3216 3267 -5 256 311 131 0 chr11 21828836 21828958 -126954514 + MIR SINE MIR 125 262 0 407 259 82 63 chr11 21829211 21829466 -126954006 + L2 LINE L2 2612 2871 -443 242 366 12 0 chr11 21829565 21829647 -126953825 + L2 LINE L2 2969 3051 -221 767 130 5 38 chr11 21829904 21830089 -126953383 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 519 252 56 14 chr11 21830465 21830608 -126952864 + MIR SINE MIR 44 192 -70 314 226 118 10 chr11 21830610 21830712 -126952760 - MLT1G1 LTR MaLR 0 555 443 759 300 86 46 chr11 21830752 21831125 -126952347 - MLT1G1 LTR MaLR -206 389 2 12261 94 17 4 chr11 21831150 21832020 -126951452 + L1P3 LINE L1 8 913 -5548 2426 56 0 0 chr11 21832020 21832374 -126951098 + AluY SINE Alu 1 354 0 12261 94 17 4 chr11 21832374 21833183 -126950289 + L1P3 LINE L1 913 1710 -4751 932 123 27 0 chr11 21833192 21833338 -126950134 + L1P3 LINE L1 3210 3359 -3102 10966 104 9 10 chr11 21833338 21835003 -126948469 + L1P3 LINE L1 3795 5458 -1003 225 65 0 0 chr11 21836134 21836165 -126947307 + (TG)n Simple_repeat Simple_repeat 2 32 0 672 254 38 22 chr11 21836839 21837024 -126946448 + MIR SINE MIR 20 207 -55 283 333 92 29 chr11 21837808 21837982 -126945490 - MIR SINE MIR -3 259 75 554 41 14 0 chr11 21838063 21838136 -126945336 + (TA)n Simple_repeat Simple_repeat 2 75 0 2124 138 34 20 chr11 21838396 21838752 -126944720 - THE1B LTR MaLR 0 364 4 293 342 53 32 chr11 21838867 21839057 -126944415 - MIR SINE MIR -49 213 20 353 381 74 33 chr11 21839178 21839422 -126944050 - L2 LINE L2 -5 3267 3014 207 276 90 30 chr11 21839612 21839746 -126943726 - L2 LINE L2 -460 2854 2713 764 216 117 30 chr11 21840519 21840629 -126942843 - MIR SINE MIR 0 262 163 1655 196 45 25 chr11 21840629 21840987 -126942485 + MLT1A1 LTR MaLR 1 365 0 764 216 117 30 chr11 21840987 21841107 -126942365 - MIR SINE MIR -99 163 12 312 342 76 0 chr11 21841288 21841446 -126942026 - MIR SINE MIR 0 262 93 269 264 73 27 chr11 21841637 21841747 -126941725 - L3b LINE CR1 -212 1371 1257 647 163 0 0 chr11 21841759 21841857 -126941615 + AluSg/x SINE Alu 153 250 -60 260 0 57 0 chr11 21841864 21841899 -126941573 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 190 152 0 65 chr11 21842240 21842286 -126941186 - L2 LINE L2 -7 3265 3223 1366 167 80 18 chr11 21842334 21842610 -126940862 - MSTC LTR MaLR 0 428 136 2248 146 34 48 chr11 21842610 21843028 -126940444 + MSTA LTR MaLR 17 428 0 671 150 18 9 chr11 21843031 21843144 -126940328 - MSTC LTR MaLR -313 115 2 579 337 0 5 chr11 21843146 21843336 -126940136 + MIR SINE MIR 74 262 0 268 304 0 14 chr11 21843354 21843423 -126940049 - L2 LINE L2 -44 3228 3161 222 299 174 33 chr11 21843425 21843666 -126939806 - L2 LINE L2 -404 2910 2636 2128 120 3 0 chr11 21843670 21843962 -126939510 - AluSx SINE Alu -19 293 1 196 252 70 19 chr11 21844086 21844169 -126939303 - MIR SINE MIR -118 90 7 244 175 0 53 chr11 21844385 21844442 -126939030 - L1ME4a LINE L1 -100 6021 5968 403 251 22 78 chr11 21845160 21845391 -126938081 - L1ME4a LINE L1 -287 5834 5617 200 404 10 0 chr11 21845839 21845943 -126937529 + MIR3 SINE MIR 87 191 -17 247 313 183 9 chr11 21846666 21846781 -126936691 + L2 LINE L2 3175 3309 -4 636 255 66 33 chr11 21846864 21847076 -126936396 + MIR SINE MIR 3 221 -41 252 86 0 0 chr11 21847185 21847220 -126936252 + (TG)n Simple_repeat Simple_repeat 2 36 0 1896 150 0 45 chr11 21847230 21847543 -126935929 - AluSx SINE Alu -13 299 1 21 0 0 0 chr11 21847543 21847564 -126935908 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr11 21897623 21897650 -126885822 + (T)n Simple_repeat Simple_repeat 1 27 0 225 207 0 17 chr11 21897650 21897708 -126885764 - L1ME LINE L1 -435 5729 5673 * 1360 279 65 27 chr11 21897704 21898378 -126885094 - L1MEc LINE L1 -4159 2237 1538 307 173 37 43 chr11 21898394 21898517 -126884955 - L1M4b LINE L1 -3952 3005 2882 2544 85 12 75 chr11 21898576 21898755 -126884717 + THE1C LTR MaLR 1 143 -232 1323 47 24 0 chr11 21898755 21898925 -126884547 + L1PA4 LINE L1 5981 6154 -1 2544 85 12 75 chr11 21898925 21899145 -126884327 + THE1C LTR MaLR 143 375 0 10173 127 32 7 chr11 21899145 21900687 -126882785 + THE1C-int LTR MaLR 1 1580 0 2483 118 30 3 chr11 21900687 21901052 -126882420 + THE1C LTR MaLR 1 375 0 310 244 118 17 chr11 21901059 21901178 -126882294 - L1MA9 LINE L1 -88 6224 6094 313 277 24 80 chr11 21901433 21901646 -126881826 - L1M4b LINE L1 -4436 2702 2502 3848 232 49 31 chr11 21901947 21903538 -126879934 - L1M4b LINE L1 -4640 2319 702 835 319 21 12 chr11 21903810 21904146 -126879326 - L1MEc LINE L1 -5977 419 81 30 45 0 0 chr11 21904339 21904383 -126879089 + AT_rich Low_complexity Low_complexity 1 44 0 282 303 101 53 chr11 21905606 21905794 -126877678 - L2 LINE L2 0 3313 3117 318 200 27 0 chr11 21905827 21905902 -126877570 - MER58 DNA MER1_type 0 2420 2344 26 30 0 0 chr11 21905936 21905969 -126877503 + AT_rich Low_complexity Low_complexity 1 33 0 208 283 0 0 chr11 21906115 21906175 -126877297 + CT-rich Low_complexity Low_complexity 2 61 0 219 381 67 8 chr11 21907127 21907261 -126876211 + L3b LINE CR1 1417 1558 -25 372 306 99 22 chr11 21907822 21908044 -126875428 - MIR SINE MIR -16 246 8 216 343 57 29 chr11 21908086 21908191 -126875281 - MIR SINE MIR -78 130 23 231 114 0 0 chr11 21908212 21908247 -126875225 + (TA)n Simple_repeat Simple_repeat 1 35 0 409 286 97 9 chr11 21908890 21909189 -126874283 - MLT1J LTR MaLR 0 409 68 1465 16 0 11 chr11 21909299 21909481 -126873991 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 349 186 86 0 chr11 21909562 21909632 -126873840 - MER96 DNA MER1_type? -93 82 7 1348 220 111 30 chr11 21910668 21911100 -126872372 + MLT1C LTR MaLR 1 467 0 2413 90 0 0 chr11 21911737 21912047 -126871425 - AluY SINE Alu -1 310 1 1789 169 179 15 chr11 21912061 21912216 -126871256 + MLT1C LTR MaLR 3 131 -336 351 0 0 0 chr11 21912216 21912255 -126871217 + (CA)n Simple_repeat Simple_repeat 2 40 0 279 0 0 0 chr11 21912254 21912285 -126871187 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 1789 169 179 15 chr11 21912255 21912525 -126870947 + MLT1C LTR MaLR 131 463 -4 190 324 176 0 chr11 21913643 21913745 -126869727 + L2 LINE L2 3147 3266 -6 219 254 0 0 chr11 21913812 21913867 -126869605 - MIR SINE MIR -8 254 200 1786 167 10 13 chr11 21913955 21914267 -126869205 + AluJo SINE Alu 2 312 0 339 85 0 0 chr11 21914293 21914340 -126869132 + (GA)n Simple_repeat Simple_repeat 2 48 0 390 370 65 4 chr11 21914596 21914842 -126868630 + L2 LINE L2 2572 2832 -482 966 234 18 14 chr11 21915174 21915396 -126868076 - MER58A DNA MER1_type 0 224 2 248 336 58 0 chr11 21915396 21915500 -126867972 + L2 LINE L2 3195 3304 -9 224 353 38 23 chr11 21916229 21916391 -126867081 + MIR SINE MIR 16 180 -53 22 0 0 0 chr11 21916526 21916548 -126866924 + AT_rich Low_complexity Low_complexity 1 22 0 343 328 35 0 chr11 21916821 21916937 -126866535 - MIR3 SINE MIR -17 191 72 475 245 46 87 chr11 21917642 21917883 -126865589 - MLT1K LTR MaLR -36 552 322 42 36 0 0 chr11 21918061 21918117 -126865355 + AT_rich Low_complexity Low_complexity 1 56 0 352 158 51 62 chr11 21918117 21918294 -126865178 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 400 308 58 12 chr11 21918453 21918625 -126864847 + MIR SINE MIR 69 248 -14 708 305 43 4 chr11 21918673 21918906 -126864566 - L2 LINE L2 -176 3137 2896 2101 129 6 3 chr11 21918918 21919229 -126864243 + AluSp SINE Alu 1 312 -1 375 299 59 48 chr11 21920078 21920265 -126863207 + MIR SINE MIR 64 252 -10 193 368 66 29 chr11 21920476 21920612 -126862860 - L2 LINE L2 -457 2857 2717 319 367 47 7 chr11 21922237 21922387 -126861085 - L2 LINE L2 0 3272 3117 1397 211 54 90 chr11 21922456 21922935 -126860537 + MLT1C LTR MaLR 6 467 0 272 357 36 0 chr11 21922989 21923101 -126860371 - L2 LINE L2 -225 3047 2932 1176 323 55 23 chr11 21923273 21924019 -126859453 + L2 LINE L2 2553 3313 0 425 200 219 32 chr11 21924918 21925073 -126858399 - MIR SINE MIR -71 191 8 320 280 64 45 chr11 21925604 21925761 -126857711 - MIR SINE MIR -48 214 55 208 323 0 7 chr11 21925899 21925984 -126857488 + CT-rich Low_complexity Low_complexity 3 135 0 252 237 26 132 chr11 21926061 21926213 -126857259 + MIR SINE MIR 47 182 -80 675 303 40 9 chr11 21926951 21927179 -126856293 - MIR SINE MIR -9 253 19 851 267 43 93 chr11 21927498 21927918 -126855554 + L2 LINE L2 2915 3313 0 621 261 24 81 chr11 21927934 21928145 -126855327 - MER20 DNA MER1_type -5 214 16 192 310 17 17 chr11 21928189 21928247 -126855225 + L2 LINE L2 3241 3298 -15 5942 148 13 4 chr11 21928256 21929963 -126853509 - L1PB2 LINE L1 0 6151 4430 1223 123 5 0 chr11 21929986 21930173 -126853299 - AluSg/x SINE Alu -4 308 121 252 0 0 0 chr11 21930288 21930316 -126853156 + (A)n Simple_repeat Simple_repeat 1 28 0 439 222 154 25 chr11 21930368 21930530 -126852942 - MER112 DNA MER1_type -7 253 71 320 333 25 98 chr11 21930853 21931166 -126852306 + L2 LINE L2 2952 3241 -31 449 320 65 8 chr11 21931166 21931402 -126852070 + MIR SINE MIR 2 248 -14 817 200 12 30 chr11 21931782 21931947 -126851525 - MER20 DNA MER1_type 0 219 58 24 53 0 0 chr11 21932342 21932380 -126851092 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr11 21932926 21932952 -126850520 + AT_rich Low_complexity Low_complexity 1 26 0 333 0 0 0 chr11 21933139 21933176 -126850296 + (CA)n Simple_repeat Simple_repeat 2 38 0 246 273 80 11 chr11 21933354 21933442 -126850030 + L2 LINE L2 3184 3277 -36 466 280 60 55 chr11 21933480 21933719 -126849753 - MIR SINE MIR 0 262 22 273 325 87 16 chr11 21934363 21934489 -126848983 + MIR SINE MIR 29 163 -99 256 296 62 0 chr11 21934722 21934803 -126848669 - MIR SINE MIR -11 251 166 180 0 0 0 chr11 21935235 21935255 -126848217 + (T)n Simple_repeat Simple_repeat 1 20 0 336 339 54 15 chr11 21935776 21935906 -126847566 - L2 LINE L2 0 3272 3138 361 277 58 16 chr11 21936064 21936252 -126847220 + L1ME LINE L1 5577 5772 -349 251 268 125 27 chr11 21936473 21936585 -126846887 - MIR SINE MIR -2 260 138 250 277 64 21 chr11 21938510 21938604 -126844868 - MER5A DNA MER1_type -45 144 47 2085 205 121 11 chr11 21940058 21940531 -126842941 - MLT1F1 LTR MaLR -42 525 1 414 39 0 0 chr11 21940752 21940804 -126842668 + (TG)n Simple_repeat Simple_repeat 1 52 0 8669 214 16 8 chr11 21940919 21943758 -126839714 - L1PA16 LINE L1 -6 6160 3304 881 201 12 18 chr11 21943764 21943933 -126839539 - MER20 DNA MER1_type 0 219 52 335 122 0 0 chr11 21943933 21943982 -126839490 - L1MA6 LINE L1 -108 6192 6144 339 180 16 0 chr11 21944020 21944081 -126839391 - MER20 DNA MER1_type -152 67 6 243 88 0 0 chr11 21944122 21944156 -126839316 + (TA)n Simple_repeat Simple_repeat 2 35 0 1829 135 0 0 chr11 21944587 21944853 -126838619 - AluSx SINE Alu -12 300 35 227 338 0 14 chr11 21946902 21946973 -126836499 - MIR SINE MIR -173 89 20 594 283 26 44 chr11 21947169 21947395 -126836077 + MIR SINE MIR 13 234 -28 216 343 0 0 chr11 21947431 21947504 -126835968 - MIR SINE MIR -127 135 63 223 313 219 10 chr11 21948032 21948128 -126835344 + MIR SINE MIR 32 147 -61 242 335 64 35 chr11 21949314 21949535 -126833937 + L2 LINE L2 2736 2959 -313 288 120 0 0 chr11 21949553 21949603 -126833869 + (TA)n Simple_repeat Simple_repeat 1 50 0 538 162 105 9 chr11 21949698 21949803 -126833669 - 5S rRNA rRNA -6 115 1 1262 290 50 40 chr11 21949809 21950327 -126833145 + L2 LINE L2 2381 2903 -411 3595 23 0 5 chr11 21950338 21950771 -126832701 - L1PA3 LINE L1 0 6155 5725 26 30 0 0 chr11 21950810 21950843 -126832629 + AT_rich Low_complexity Low_complexity 1 33 0 769 318 120 0 chr11 21950877 21951201 -126832271 + L2 LINE L2 2942 3304 -9 334 311 154 39 chr11 21951352 21951657 -126831815 + L2 LINE L2 2455 2794 -520 1069 269 25 45 chr11 21952981 21953379 -126830093 + L2 LINE L2 2924 3313 0 235 360 52 15 chr11 21953381 21953517 -126829955 - MIR SINE MIR -109 153 13 443 299 60 50 chr11 21953777 21953978 -126829494 - MIR SINE MIR -40 222 20 211 179 71 71 chr11 21954170 21954226 -126829246 + MIR SINE MIR 66 121 -141 280 245 78 0 chr11 21955072 21955164 -126828308 - MIR SINE MIR -63 145 54 2163 253 59 8 chr11 21955488 21956148 -126827324 - L1ME3A LINE L1 -181 5989 5296 269 50 0 25 chr11 21956249 21956289 -126827183 + (TAA)n Simple_repeat Simple_repeat 3 41 0 2531 263 157 102 chr11 21956292 21957554 -126825918 - HAL1 LINE L1 -185 2322 765 543 202 101 31 chr11 21957554 21957683 -126825789 - AluJb SINE Alu -25 287 150 2531 263 157 102 chr11 21957683 21958491 -126824981 - HAL1 LINE L1 -1742 765 3 210 379 32 41 chr11 21959066 21959285 -126824187 + L3 LINE CR1 607 823 -754 559 330 16 47 chr11 21959970 21960228 -126823244 - MIR SINE MIR -12 250 1 261 209 0 0 chr11 21960276 21960343 -126823129 + (TA)n Simple_repeat Simple_repeat 1 67 0 325 183 84 0 chr11 21963257 21963328 -126820144 - L1ME4a LINE L1 -16 6105 6029 22 0 0 0 chr11 21963485 21963507 -126819965 + AT_rich Low_complexity Low_complexity 1 22 0 1050 207 115 72 chr11 21963569 21963917 -126819555 + MLT1A1 LTR MaLR 1 363 -2 37 23 0 0 chr11 21963922 21963966 -126819506 + AT_rich Low_complexity Low_complexity 1 44 0 211 372 0 12 chr11 21965331 21965417 -126818055 + MIR3 SINE MIR 83 167 -41 771 286 128 8 chr11 21965432 21965666 -126817806 - MIR SINE MIR 0 262 1 233 346 91 35 chr11 21966054 21966308 -126817164 - L3 LINE CR1 -7 1570 1303 391 300 65 35 chr11 21966339 21966509 -126816963 - L3 LINE CR1 -742 835 661 377 324 126 0 chr11 21967654 21967836 -126815636 + MIR SINE MIR 29 233 -29 516 229 35 28 chr11 21969243 21969387 -126814085 - MLT1K LTR MaLR -23 565 421 12107 170 76 4 chr11 21969605 21971892 -126811580 - L1PBa LINE L1 -4412 2451 1 291 265 0 0 chr11 21972223 21972291 -126811181 - MER58B DNA MER1_type -16 325 258 2394 93 0 3 chr11 21972395 21972707 -126810765 + AluY SINE Alu 1 311 0 1007 98 0 0 chr11 21972870 21973003 -126810469 - AluSq/x SINE Alu -180 133 1 258 81 0 0 chr11 21973006 21973043 -126810429 + (TTG)n Simple_repeat Simple_repeat 3 39 0 9481 209 34 17 chr11 21973043 21975557 -126807915 - L1 LINE L1 -1760 4386 1843 1502 222 47 33 chr11 21975839 21976263 -126807209 - L1ME2 LINE L1 -10 6154 5725 291 137 0 39 chr11 21976379 21976430 -126807042 - MLT1K LTR MaLR -531 57 9 242 305 137 0 chr11 21977112 21977207 -126806265 - MIR3 SINE MIR -11 197 90 207 299 90 42 chr11 21979044 21979211 -126804261 - MIR SINE MIR 0 262 88 1874 145 97 0 chr11 21979329 21979680 -126803792 - L1MA4 LINE L1 -2 6298 5914 2070 147 0 0 chr11 21979769 21980075 -126803397 + AluJb SINE Alu 1 306 -6 348 323 75 38 chr11 21980683 21980869 -126802603 - MER117 DNA MER1_type -1 196 4 1919 22 0 0 chr11 21981161 21981390 -126802082 - L1PA3 LINE L1 -851 5295 5067 7065 34 0 0 chr11 21981391 21982227 -126801245 + L1PA3 LINE L1 5317 6152 -3 33 0 0 0 chr11 21982227 21982260 -126801212 + AT_rich Low_complexity Low_complexity 1 33 0 237 228 0 0 chr11 21982519 21982576 -126800896 + GA-rich Low_complexity Low_complexity 2 58 0 28 79 0 0 chr11 21982591 21982654 -126800818 + AT_rich Low_complexity Low_complexity 1 63 0 240 217 33 0 chr11 21983034 21983094 -126800378 + GA-rich Low_complexity Low_complexity 2 63 0 418 311 76 42 chr11 21983630 21983868 -126799604 + MIR SINE MIR 3 248 -14 636 225 17 29 chr11 21984188 21984361 -126799111 - MER96B DNA MER1_type? -5 412 242 430 319 100 2 chr11 21984979 21985199 -126798273 - MIR SINE MIR 0 262 25 187 371 32 24 chr11 21986139 21986263 -126797209 - MIR SINE MIR -117 145 21 432 254 153 16 chr11 21989537 21989726 -126793746 - MIR SINE MIR -43 219 5 218 271 0 14 chr11 21989802 21989872 -126793600 + CT-rich Low_complexity Low_complexity 2 70 0 404 244 71 24 chr11 21990581 21990708 -126792764 - MIR SINE MIR -5 257 125 273 336 47 28 chr11 21990741 21990848 -126792624 - L2 LINE L2 -1 3271 3163 709 324 68 21 chr11 21991272 21991608 -126791864 + MLT1I LTR MaLR 44 395 -14 192 125 0 0 chr11 21992675 21992707 -126790765 + (TG)n Simple_repeat Simple_repeat 2 33 0 318 321 105 34 chr11 21992920 21993807 -126789665 + HAL1 LINE L1 9 1085 -1422 2046 207 17 67 chr11 21993823 21994302 -126789170 + L1M4c LINE L1 32 486 -5898 * 5367 207 37 46 chr11 21994297 21994729 -126788743 + L1M4c LINE L1 1248 1682 -4700 243 0 0 0 chr11 21994729 21994756 -126788716 + (TG)n Simple_repeat Simple_repeat 2 28 0 5367 207 37 46 chr11 21994756 21995718 -126787754 + L1M4c LINE L1 1682 2651 -3731 2129 94 11 17 chr11 21995718 21996005 -126787467 + AluSc SINE Alu 3 287 -22 5367 207 37 46 chr11 21996005 21996970 -126786502 + L1M4c LINE L1 2651 3587 -2795 2141 133 0 0 chr11 21996970 21997279 -126786193 + AluSx SINE Alu 1 309 -3 5367 207 37 46 chr11 21997279 21997748 -126785724 + L1M4c LINE L1 3587 4059 -2323 259 77 0 0 chr11 21997748 21997787 -126785685 + L1M4c LINE L1 4793 4831 -1551 383 212 17 59 chr11 21997805 21997923 -126785549 + L1M4c LINE L1 4807 4919 -1463 1506 223 168 0 chr11 21998000 21998394 -126785078 + MLT1D LTR MaLR 46 505 0 473 220 11 44 chr11 21998472 21998654 -126784818 + HAL1 LINE L1 2240 2415 -92 236 245 10 122 chr11 21998932 21999030 -126784442 + L2 LINE L2 3186 3272 0 1895 287 25 33 chr11 21999344 21999957 -126783515 - MLT2E LTR ERVL 0 628 21 631 183 25 17 chr11 22000218 22000338 -126783134 + BC200 scRNA scRNA 1 121 -79 232 250 22 43 chr11 22002524 22002616 -126780856 + MIR SINE MIR 102 191 -71 596 278 39 78 chr11 22003804 22004135 -126779337 + L2 LINE L2 2996 3313 0 430 333 43 24 chr11 22004501 22004711 -126778761 + MIR SINE MIR 31 244 -18 542 343 28 12 chr11 22005101 22005355 -126778117 - MER90 LTR ERV1 0 614 357 10155 205 48 46 chr11 22005359 22006296 -126777176 - L1MA5 LINE L1 -7 6995 6061 2202 117 3 0 chr11 22006296 22006605 -126776867 - AluSp SINE Alu -2 311 2 10155 205 48 46 chr11 22006605 22008595 -126774877 - L1MA5 LINE L1 -941 6061 4076 2044 143 7 0 chr11 22008595 22008902 -126774570 - AluSc SINE Alu 0 309 1 10155 205 48 46 chr11 22008902 22009918 -126773554 - L1MA5 LINE L1 -2926 4076 3063 2224 103 3 0 chr11 22009918 22010208 -126773264 - AluSp SINE Alu -22 291 1 10155 205 48 46 chr11 22010208 22010808 -126772664 - L1MA5 LINE L1 -3939 3063 2414 186 71 0 0 chr11 22010808 22010836 -126772636 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 10155 205 48 46 chr11 22010836 22011360 -126772112 - L1MA5 LINE L1 -4588 2414 1892 267 282 88 39 chr11 22013229 22013410 -126770062 - L2 LINE L2 -1280 2034 1845 468 0 0 0 chr11 22013880 22013932 -126769540 + (TG)n Simple_repeat Simple_repeat 2 53 0 21 71 0 0 chr11 22014239 22014281 -126769191 + AT_rich Low_complexity Low_complexity 1 42 0 213 324 0 0 chr11 22015151 22015225 -126768247 - L2 LINE L2 0 3313 3240 198 0 0 0 chr11 22015595 22015617 -126767855 + (T)n Simple_repeat Simple_repeat 1 22 0 1519 194 45 45 chr11 22015636 22016032 -126767440 - MSTD LTR MaLR 0 396 1 1498 114 155 42 chr11 22016269 22016533 -126766939 + AluSx SINE Alu 14 307 -5 240 251 72 24 chr11 22016542 22016709 -126766763 - L1ME4a LINE L1 0 6121 5947 348 298 136 25 chr11 22016967 22017165 -126766307 - L1ME4a LINE L1 -439 5682 5463 1296 184 36 0 chr11 22017240 22017517 -126765955 - L1MA1 LINE L1 -1 6301 6015 12728 152 74 35 chr11 22017517 22017965 -126765507 - L1M1 LINE L1 -4102 3463 3034 2132 104 9 35 chr11 22017965 22018282 -126765190 - AluSp SINE Alu -4 309 1 12728 152 74 35 chr11 22018282 22020944 -126762528 - L1M1 LINE L1 -4531 3034 13 28 0 0 0 chr11 22021097 22021125 -126762347 + AT_rich Low_complexity Low_complexity 1 28 0 535 256 19 0 chr11 22021200 22021217 -126762255 - L1MA10 LINE L1 -3 6331 6315 2343 257 50 29 chr11 22021217 22022662 -126760810 - L1ME1 LINE L1 -12 6223 4751 2462 55 10 0 chr11 22023558 22023866 -126759606 + AluY SINE Alu 1 311 0 23 0 0 0 chr11 22024269 22024292 -126759180 + AT_rich Low_complexity Low_complexity 1 23 0 500 242 54 13 chr11 22024908 22025057 -126758415 - L1ME1 LINE L1 -6228 168 14 * 1290 284 58 13 chr11 22025030 22025717 -126757755 - L1MDa LINE L1 -2688 3527 2810 1269 233 39 102 chr11 22025749 22026567 -126756905 - L1MDa LINE L1 -3490 2916 2185 4290 12 0 20 chr11 22026567 22027075 -126756397 - L1PA2 LINE L1 0 6155 5658 1269 233 39 102 chr11 22027075 22027243 -126756229 - L1MDa LINE L1 -4221 2185 2008 1587 216 36 31 chr11 22027248 22027605 -126755867 - MLT1A2 LTR MaLR -15 359 1 561 294 78 10 chr11 22027606 22027905 -126755567 - L1MDa LINE L1 -4522 1884 1651 243 125 0 0 chr11 22027946 22027986 -126755486 + (T)n Simple_repeat Simple_repeat 1 40 0 1638 182 6 46 chr11 22028119 22028443 -126755029 - AluJo SINE Alu 0 312 2 246 267 9 88 chr11 22028448 22028665 -126754807 - L1MDa LINE L1 -4910 1498 1299 1932 107 3 27 chr11 22028687 22028985 -126754487 - AluSx SINE Alu -2 310 20 234 283 118 13 chr11 22029001 22029153 -126754319 - L1MDa LINE L1 -4987 1422 1255 243 253 27 0 chr11 22029236 22029311 -126754161 - L1MDa LINE L1 -6207 380 304 220 104 42 104 chr11 22029434 22029482 -126753990 - L2 LINE L2 -3 3310 3266 306 327 151 48 chr11 22030056 22031023 -126752449 - L2 LINE L2 -630 2684 1618 1213 262 33 24 chr11 22031037 22031460 -126752012 + L1ME4a LINE L1 5499 5925 -196 233 282 43 52 chr11 22031822 22031946 -126751526 - MIR SINE MIR -66 142 13 188 246 14 58 chr11 22034085 22034154 -126749318 + MIR SINE MIR 28 93 -169 231 266 16 0 chr11 22034192 22034256 -126749216 - MER103 DNA DNA -81 85 21 830 282 31 19 chr11 22034392 22034651 -126748821 - MIR SINE MIR 0 262 1 435 351 96 49 chr11 22086753 22087285 -126696187 - L2 LINE L2 -18 3295 2743 24 0 0 0 chr11 22087885 22087909 -126695563 + AT_rich Low_complexity Low_complexity 1 24 0 453 316 84 5 chr11 22088443 22088633 -126694839 - Charlie8 DNA MER1_type -2207 210 6 1471 211 148 34 chr11 22089499 22089939 -126693533 - MLT1D LTR MaLR -7 498 9 1171 177 50 71 chr11 22090276 22090364 -126693108 + AluJo SINE Alu 36 124 -188 282 56 0 0 chr11 22090364 22090400 -126693072 + (TGAA)n Simple_repeat Simple_repeat 2 37 0 1171 177 50 71 chr11 22090400 22090594 -126692878 + AluJo SINE Alu 124 312 0 234 330 43 0 chr11 22091108 22091223 -126692249 - MIR SINE MIR -27 235 116 23 0 0 0 chr11 22091971 22091994 -126691478 + AT_rich Low_complexity Low_complexity 1 23 0 368 316 17 22 chr11 22092952 22093119 -126690353 + MIR SINE MIR 13 180 -28 770 222 30 6 chr11 22093139 22093306 -126690166 + L1PA16 LINE L1 5961 6131 -35 4185 196 33 32 chr11 22094028 22095005 -126688467 + L1MA9 LINE L1 5297 6274 -38 23 33 0 0 chr11 22095573 22095603 -126687869 + AT_rich Low_complexity Low_complexity 1 30 0 193 273 101 50 chr11 22095663 22095715 -126687757 - L2 LINE L2 -15 3298 3250 1450 110 97 0 chr11 22095715 22095952 -126687520 + L1PA13 LINE L1 5899 6158 -5 193 273 101 50 chr11 22095952 22095998 -126687474 - L2 LINE L2 -63 3250 3195 271 297 0 11 chr11 22096979 22097070 -126686402 + (TTCA)n Simple_repeat Simple_repeat 1 90 0 423 296 29 48 chr11 22097189 22097395 -126686077 - MIR SINE MIR -10 252 51 387 264 126 43 chr11 22097564 22097880 -126685592 - LTR33A LTR ERVL -11 512 127 1682 194 31 25 chr11 22098228 22098588 -126684884 + MLT1A1 LTR MaLR 1 362 -3 771 183 35 0 chr11 22100109 22100251 -126683221 + FRAM SINE Alu 17 163 -13 894 341 68 11 chr11 22100583 22100952 -126682520 - L2 LINE L2 -1 3312 2923 346 331 12 6 chr11 22100999 22101168 -126682304 + L1M4 LINE L1 2653 2822 -3324 2184 116 0 0 chr11 22101204 22101498 -126681974 + AluSc SINE Alu 1 294 -15 21 0 0 0 chr11 22101540 22101561 -126681911 + AT_rich Low_complexity Low_complexity 1 21 0 2102 136 49 9 chr11 22101675 22102020 -126681452 + THE1B LTR MaLR 1 359 -5 9950 112 31 43 chr11 22102029 22103629 -126679843 + THE1B-int LTR MaLR 1 1580 0 2243 132 28 11 chr11 22103630 22103987 -126679485 + THE1B LTR MaLR 2 364 0 500 291 77 64 chr11 22104001 22104327 -126679145 + L1PB2 LINE L1 3067 3396 -2750 6359 181 14 9 chr11 22104412 22106985 -126676487 + L1PB2 LINE L1 3516 6149 -2 454 324 34 8 chr11 22107005 22107243 -126676229 + L1M4 LINE L1 3871 4114 -2032 2901 50 14 0 chr11 22107244 22107608 -126675864 - L1PA3 LINE L1 0 6155 5787 13289 48 7 3 chr11 22107708 22109818 -126673654 - L1PA5 LINE L1 -329 5825 3706 235 277 84 0 chr11 22109966 22110085 -126673387 - L1M4 LINE L1 -3313 2833 2705 567 265 77 18 chr11 22110265 22110435 -126673037 - MER20 DNA MER1_type -39 180 1 396 277 31 8 chr11 22111125 22111255 -126672217 - MER117 DNA MER1_type -29 168 36 1778 166 0 7 chr11 22114315 22114598 -126668874 + AluJb SINE Alu 1 281 -31 286 211 26 0 chr11 22114602 22114678 -126668794 + (TA)n Simple_repeat Simple_repeat 2 79 0 1116 270 87 23 chr11 22114722 22115371 -126668101 - L1ME3A LINE L1 -213 5949 5254 485 262 90 57 chr11 22115537 22116049 -126667423 - L1ME3A LINE L1 -1131 5015 4487 26 30 0 0 chr11 22116184 22116217 -126667255 + AT_rich Low_complexity Low_complexity 1 33 0 1261 195 100 0 chr11 22116280 22116521 -126666951 + AluJo SINE Alu 1 265 -47 2102 153 0 0 chr11 22116626 22116934 -126666538 - AluSx SINE Alu -4 308 1 6062 53 8 0 chr11 22117147 22117914 -126665558 + L1PA5 LINE L1 5381 6153 -1 507 247 49 138 chr11 22117939 22118278 -126665194 + L1M4 LINE L1 3718 4009 -2137 1875 122 0 46 chr11 22118278 22118582 -126664890 + AluSx SINE Alu 1 290 -22 507 247 49 138 chr11 22118582 22118692 -126664780 + L1M4 LINE L1 4009 4127 -2019 21 36 0 0 chr11 22118852 22118880 -126664592 + AT_rich Low_complexity Low_complexity 1 28 0 615 227 76 35 chr11 22119769 22119941 -126663531 + MER97c DNA MER1_type? 1 179 -911 2169 123 0 0 chr11 22120137 22120437 -126663035 - AluSg SINE Alu -10 300 1 183 303 103 71 chr11 22120740 22120895 -126662577 + MIR SINE MIR 48 207 -55 919 236 241 30 chr11 22122933 22123394 -126660078 + LTR50 LTR ERVL 43 600 -195 302 209 15 0 chr11 22123471 22123538 -126659934 + LTR50 LTR ERVL 710 777 -18 399 333 15 7 chr11 22123963 22124098 -126659374 + L2 LINE L2 2922 3057 -256 846 104 22 0 chr11 22126364 22126499 -126656973 - L1PA14 LINE L1 0 6161 6024 487 299 6 35 chr11 22126722 22126896 -126656576 + MER5B DNA MER1_type 1 169 -9 1163 305 109 41 chr11 22127369 22127577 -126655895 + L2 LINE L2 1699 1891 -1423 1345 245 51 74 chr11 22127577 22128129 -126655343 + MLT1F LTR MaLR 1 539 -3 1163 305 109 41 chr11 22128129 22128655 -126654817 + L2 LINE L2 1891 2483 -831 315 331 169 0 chr11 22128695 22128831 -126654641 + MER5A DNA MER1_type 31 189 0 196 279 0 116 chr11 22129225 22129311 -126654161 - L2 LINE L2 -3 3269 3194 239 391 51 70 chr11 22129808 22130064 -126653408 + L2 LINE L2 3007 3257 -15 396 204 23 0 chr11 22130317 22130405 -126653067 + L1MA9 LINE L1 6218 6307 -5 445 91 13 13 chr11 22130645 22130722 -126652750 + (TA)n Simple_repeat Simple_repeat 2 78 0 1999 149 0 3 chr11 22130806 22131107 -126652365 + AluSx SINE Alu 3 302 -10 267 245 53 21 chr11 22131208 22131302 -126652170 - L1ME LINE L1 -338 5783 5687 216 283 0 0 chr11 22131748 22131794 -126651678 + L2 LINE L2 3218 3263 -9 195 313 16 0 chr11 22131805 22131869 -126651603 + MIR SINE MIR 74 138 -124 212 320 105 26 chr11 22132213 22132366 -126651106 - L3 LINE CR1 -32 1545 1381 220 156 0 0 chr11 22132694 22132726 -126650746 + MER91B DNA MER1_type 30 61 -129 239 200 140 20 chr11 22132755 22132855 -126650617 - MER112 DNA MER1_type -43 217 106 810 294 12 20 chr11 22132895 22133140 -126650332 + MIR SINE MIR 1 243 -19 243 188 116 29 chr11 22133219 22133288 -126650184 - MER112 DNA MER1_type -185 75 1 200 297 5 108 chr11 22133783 22133968 -126649504 + MIR SINE MIR 49 214 -48 21 0 0 0 chr11 22134141 22134162 -126649310 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 22134511 22134539 -126648933 + AT_rich Low_complexity Low_complexity 1 28 0 848 251 54 34 chr11 22134646 22135154 -126648318 - MER76 LTR ERV -66 622 41 209 33 33 0 chr11 22136519 22136549 -126646923 + (TC)n Simple_repeat Simple_repeat 2 32 0 1045 179 0 0 chr11 22137287 22137455 -126646017 + FAM SINE Alu 2 169 -6 1838 244 86 41 chr11 22137488 22138118 -126645354 - MER76 LTR ERV -30 658 1 2299 254 47 32 chr11 22138411 22139032 -126644440 - MER21B LTR ERV1 -134 729 100 248 188 0 42 chr11 22139107 22139155 -126644317 - MER21B LTR ERV1 -778 85 40 281 352 0 0 chr11 22140737 22140842 -126642630 + MER103 DNA DNA 1 105 -61 426 20 0 0 chr11 22141791 22141842 -126641630 + (TA)n Simple_repeat Simple_repeat 2 52 0 1584 282 93 33 chr11 22141853 22142756 -126640716 + L2 LINE L2 2338 3313 0 25 0 0 0 chr11 22142813 22142838 -126640634 + AT_rich Low_complexity Low_complexity 1 25 0 224 288 25 59 chr11 22143038 22143156 -126640316 - MIR SINE MIR -86 176 63 329 331 35 29 chr11 22144718 22144890 -126638582 - MIR SINE MIR -34 228 56 382 338 31 6 chr11 22145095 22145255 -126638217 + MIR3 SINE MIR 38 201 -7 468 326 98 5 chr11 22145359 22145574 -126637898 - MIR SINE MIR -15 247 13 234 0 0 0 chr11 22145800 22145826 -126637646 + (ATATG)n Simple_repeat Simple_repeat 3 28 0 4909 205 42 53 chr11 22145877 22147054 -126636418 + L1MB8 LINE L1 3711 4899 -1279 1528 203 13 16 chr11 22147054 22147364 -126636108 - AluJo SINE Alu 0 312 4 4909 205 42 53 chr11 22147364 22147911 -126635561 + L1MB8 LINE L1 4899 5451 -727 1695 130 0 0 chr11 22147911 22148150 -126635322 + AluSx SINE Alu 58 296 -16 4909 205 42 53 chr11 22148150 22148920 -126634552 + L1MB8 LINE L1 5451 6172 -6 400 306 50 40 chr11 22149317 22149516 -126633956 - L3 LINE CR1 -141 1436 1236 282 239 65 43 chr11 22149566 22149658 -126633814 + MIR SINE MIR 80 173 -89 269 257 40 0 chr11 22150286 22150360 -126633112 - MIR SINE MIR -79 183 107 300 309 0 0 chr11 22150565 22150633 -126632839 + MIR SINE MIR 38 105 -103 2217 150 17 3 chr11 22150811 22151170 -126632302 + THE1B LTR MaLR 1 364 0 10752 107 9 29 chr11 22151171 22152782 -126630690 + THE1B-int LTR MaLR 2 1580 0 2400 124 6 6 chr11 22152782 22153146 -126630326 + THE1B LTR MaLR 1 364 0 2061 178 88 15 chr11 22153266 22153744 -126629728 + Charlie1b DNA MER1_type 11 523 0 233 241 92 23 chr11 22154508 22154595 -126628877 + MLT1H LTR MaLR 205 297 -252 663 249 165 8 chr11 22155742 22155979 -126627493 + ORSL DNA AcHobo 2 275 0 1175 228 24 61 chr11 22156548 22156926 -126626546 + MLT1A1 LTR MaLR 2 365 0 331 266 188 26 chr11 22156950 22157104 -126626368 + MER5A DNA MER1_type 9 187 -2 273 347 81 9 chr11 22158009 22158231 -126625241 + L1 LINE L1 3595 3832 -2314 338 312 54 18 chr11 22158691 22158967 -126624505 - L1ME3A LINE L1 -217 5953 5668 311 164 16 33 chr11 22158997 22159058 -126624414 + MER3 DNA MER1_type 1 60 -149 210 278 17 26 chr11 22159211 22159326 -126624146 + T-rich Low_complexity Low_complexity 2 115 0 293 323 44 75 chr11 22159886 22160248 -126623224 + MER31-int LTR ERV1 3677 4027 -909 233 246 33 0 chr11 22160984 22161045 -126622427 - MIR SINE MIR 0 262 200 2219 161 52 15 chr11 22161045 22161364 -126622108 + L1MA9 LINE L1 5825 6168 -144 240 59 0 0 chr11 22161364 22161398 -126622074 + (CA)n Simple_repeat Simple_repeat 1 34 0 2219 161 52 15 chr11 22161398 22161544 -126621928 + L1MA9 LINE L1 6168 6307 -5 369 242 11 0 chr11 22161694 22161789 -126621683 + MER69 DNA AcHobo 2430 2525 -1 473 276 31 24 chr11 22161792 22161919 -126621553 - MIR SINE MIR -129 133 6 243 314 92 65 chr11 22162107 22162260 -126621212 - MIR SINE MIR -95 167 11 226 297 127 8 chr11 22162346 22162464 -126621008 - MIR SINE MIR -60 202 71 36 62 0 0 chr11 22163457 22163521 -126619951 + AT_rich Low_complexity Low_complexity 1 64 0 543 267 83 107 chr11 22163715 22164388 -126619084 - L1ME3A LINE L1 -230 6009 5354 277 270 6 30 chr11 22164590 22164717 -126618755 - L1ME3A LINE L1 -1134 5081 4956 924 278 83 53 chr11 22164740 22165211 -126618261 - L2 LINE L2 0 3313 2829 209 182 23 0 chr11 22165269 22165313 -126618159 - L2 LINE L2 -582 2732 2688 973 319 48 23 chr11 22165324 22165719 -126617753 - MLT1I LTR MaLR 0 409 5 566 265 114 18 chr11 22165728 22166000 -126617472 - L2 LINE L2 -620 2694 2397 260 250 56 19 chr11 22166070 22166178 -126617294 + LTR33A LTR ERVL 411 522 -1 428 283 48 54 chr11 22166441 22166904 -126616568 - L1ME3A LINE L1 -1373 4842 4383 263 225 110 37 chr11 22166990 22167208 -126616264 - L1ME3A LINE L1 -4130 2266 2033 351 328 87 6 chr11 22167482 22167665 -126615807 + MLT1H1 LTR MaLR 1 198 -357 252 198 0 123 chr11 22167862 22167968 -126615504 + MLT1E3 LTR MaLR 528 620 -4 1780 138 55 0 chr11 22167976 22168303 -126615169 + L1MA9 LINE L1 5946 6290 -22 290 51 34 34 chr11 22168383 22168442 -126615030 + (TTTTA)n Simple_repeat Simple_repeat 2 60 0 273 30 30 60 chr11 22168483 22168550 -126614922 + (TTTTA)n Simple_repeat Simple_repeat 1 65 0 2450 18 0 0 chr11 22168550 22168832 -126614640 - L1PA2 LINE L1 -13 6142 5861 946 227 73 5 chr11 22168947 22169167 -126614305 - MLT1A1 LTR MaLR -1 364 130 1788 218 68 16 chr11 22169199 22169713 -126613759 - L1MD3 LINE L1 -16 7979 7439 209 284 81 0 chr11 22169963 22170037 -126613435 + MIR SINE MIR 70 149 -113 3127 185 30 3 chr11 22170278 22170901 -126612571 + L1PB4 LINE L1 5506 6145 -11 323 318 35 38 chr11 22170950 22171146 -126612326 - MIR SINE MIR -50 212 17 29 84 0 0 chr11 22171410 22171481 -126611991 + AT_rich Low_complexity Low_complexity 1 71 0 2127 106 0 44 chr11 22171599 22171919 -126611553 - AluSc SINE Alu -3 306 1 479 327 39 0 chr11 22172200 22172353 -126611119 - MIR SINE MIR -67 195 37 194 31 0 62 chr11 22172380 22172412 -126611060 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 1157 278 37 14 chr11 22172618 22172824 -126610648 - L1MD2 LINE L1 -10 6349 6130 207 0 0 0 chr11 22172824 22172847 -126610625 + (TG)n Simple_repeat Simple_repeat 2 24 0 1157 278 37 14 chr11 22172847 22172992 -126610480 - L1MD2 LINE L1 -229 6130 5990 204 301 121 0 chr11 22173325 22173408 -126610064 + MIR SINE MIR 59 151 -111 189 228 129 99 chr11 22173710 22173811 -126609661 - MIR SINE MIR -75 133 30 251 359 35 12 chr11 22173906 22174085 -126609387 + MIR3 SINE MIR 10 191 -67 343 274 14 27 chr11 22174184 22174330 -126609142 + (TATATG)n Simple_repeat Simple_repeat 3 146 0 185 263 44 79 chr11 22174515 22174629 -126608843 - MIR3 SINE MIR -7 201 92 575 262 7 14 chr11 22175023 22175168 -126608304 - MER5B DNA MER1_type 0 178 35 23 0 0 0 chr11 22175188 22175211 -126608261 + AT_rich Low_complexity Low_complexity 1 23 0 192 286 20 0 chr11 22175211 22175260 -126608212 + MER5B DNA MER1_type 129 178 0 214 242 0 16 chr11 22175305 22175367 -126608105 + (CTAG)n Simple_repeat Simple_repeat 2 62 0 871 312 62 29 chr11 22175779 22176234 -126607238 - L2 LINE L2 -11 3302 2833 320 125 16 0 chr11 22176247 22176311 -126607161 + CT-rich Low_complexity Low_complexity 2 66 0 234 221 0 104 chr11 22176401 22176478 -126606994 - L1M3de LINE L1 -6163 490 422 199 370 94 0 chr11 22176478 22176605 -126606867 - MIR3 SINE MIR -60 148 10 26 74 0 0 chr11 22176805 22176859 -126606613 + AT_rich Low_complexity Low_complexity 1 54 0 239 330 11 32 chr11 22177452 22177546 -126605926 + MIR SINE MIR 20 111 -151 296 282 120 14 chr11 22177735 22177877 -126605595 + L1M4 LINE L1 4204 4360 -1786 23 0 0 0 chr11 22177878 22177901 -126605571 + AT_rich Low_complexity Low_complexity 1 23 0 42106 36 23 1 chr11 22177902 22183923 -126599549 - L1PA3 LINE L1 -1 6154 2 1084 254 43 59 chr11 22185221 22185662 -126597810 - L1ME2 LINE L1 -7 6157 5724 6350 196 41 59 chr11 22186423 22187615 -126595857 - L1MA9 LINE L1 -233 6079 4867 896 228 0 0 chr11 22187615 22187773 -126595699 - FRAM SINE Alu -8 158 1 6350 196 41 59 chr11 22187773 22189139 -126594333 - L1MA9 LINE L1 -1445 4867 3562 218 233 10 33 chr11 22189241 22189311 -126594161 + GA-rich Low_complexity Low_complexity 3 51 0 413 288 17 8 chr11 22189311 22189429 -126594043 + L2 LINE L2 3195 3313 0 316 313 70 0 chr11 22190326 22190441 -126593031 + L2 LINE L2 3191 3313 0 251 331 89 3 chr11 22190485 22190651 -126592821 - MIR SINE MIR -66 142 3 585 262 32 27 chr11 22190963 22191150 -126592322 + MER58A DNA MER1_type 37 224 0 816 233 0 6 chr11 22191302 22191465 -126592007 + FRAM SINE Alu 1 162 -14 240 323 132 37 chr11 22191541 22191626 -126591846 - MIR SINE MIR -17 245 170 2138 99 10 7 chr11 22191626 22191919 -126591553 - AluSx SINE Alu -18 294 1 240 323 132 37 chr11 22191919 22192022 -126591450 - MIR SINE MIR -92 170 39 456 314 97 17 chr11 22192151 22192538 -126590934 - LTR16A LTR ERVL -7 443 1 369 287 69 35 chr11 22192539 22192741 -126590731 - HERV16 LTR ERVL -1 4995 4787 258 375 40 23 chr11 22192781 22193080 -126590392 - ERVL LTR ERVL -531 5233 4930 340 383 122 0 chr11 22194260 22194456 -126589016 - HAL1b LINE L1 -819 529 310 7241 32 14 0 chr11 22194640 22195637 -126587835 + L1PA4 LINE L1 5142 6150 -5 225 0 0 0 chr11 22195644 22195669 -126587803 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 22 56 0 0 chr11 22196114 22196150 -126587322 + AT_rich Low_complexity Low_complexity 1 36 0 30 0 0 0 chr11 22196286 22196316 -126587156 + AT_rich Low_complexity Low_complexity 1 30 0 4762 224 81 33 chr11 22196556 22197412 -126586060 + Charlie1a DNA MER1_type 1 951 -1810 2357 92 0 16 chr11 22197412 22197727 -126585745 + AluSg SINE Alu 1 310 0 4762 224 81 33 chr11 22197727 22198251 -126585221 + Charlie1a DNA MER1_type 951 1448 -7 594 292 84 8 chr11 22198774 22199154 -126584318 + L1ME4a LINE L1 5522 5930 -191 3463 248 81 27 chr11 22199611 22200656 -126582816 + L1MC1 LINE L1 393 1525 -5065 989 245 54 36 chr11 22200679 22201273 -126582199 + L1MC1 LINE L1 1631 3819 -2721 18451 104 10 3 chr11 22201415 22204924 -126578548 - L1PA7 LINE L1 -5 6149 2615 8487 112 5 13 chr11 22204926 22206235 -126577237 + L1PA7 LINE L1 1294 2591 -3555 264 230 59 67 chr11 22206394 22206529 -126576943 + L1MC1 LINE L1 4014 4147 -2393 2180 88 0 14 chr11 22206529 22206825 -126576647 + AluY SINE Alu 1 292 -19 234 0 0 0 chr11 22206843 22206869 -126576603 + (CA)n Simple_repeat Simple_repeat 2 27 0 329 273 23 0 chr11 22206869 22206957 -126576515 - L1MC4 LINE L1 -1339 6703 6614 2446 264 94 12 chr11 22206957 22207907 -126575565 + L1MC1 LINE L1 4139 5166 -1374 1736 218 65 30 chr11 22207932 22208275 -126575197 + L1MC1 LINE L1 5420 5750 -886 327 25 0 0 chr11 22208275 22208315 -126575157 + (CA)n Simple_repeat Simple_repeat 2 41 0 1736 218 65 30 chr11 22208315 22208699 -126574773 + L1MC1 LINE L1 5750 6169 -467 198 0 0 0 chr11 22208699 22208721 -126574751 + (A)n Simple_repeat Simple_repeat 1 22 0 243 0 0 0 chr11 22209151 22209178 -126574294 + (A)n Simple_repeat Simple_repeat 1 27 0 1353 177 78 0 chr11 22209217 22209500 -126573972 + L1MC1 LINE L1 6421 6725 -2 211 360 60 0 chr11 22209762 22209862 -126573610 + MIR SINE MIR 152 257 -5 529 306 46 6 chr11 22209882 22210055 -126573417 - MIR SINE MIR -71 191 12 1062 222 114 43 chr11 22210555 22210924 -126572548 + MSTD LTR MaLR 1 395 -1 2249 251 79 38 chr11 22211453 22212006 -126571466 - L1ME1 LINE L1 -5 6161 5552 2402 91 0 3 chr11 22212006 22212315 -126571157 + AluY SINE Alu 2 309 -2 2249 251 79 38 chr11 22212315 22212736 -126570736 - L1ME1 LINE L1 -614 5552 5150 232 256 23 0 chr11 22213152 22213238 -126570234 + CT-rich Low_complexity Low_complexity 3 90 0 191 414 29 10 chr11 22213247 22213351 -126570121 - L2 LINE L2 -1 3312 3207 231 349 15 38 chr11 22215043 22215175 -126568297 - LTR67 LTR ERVL -37 520 392 216 178 44 0 chr11 22215469 22215514 -126567958 - MIR SINE MIR -179 83 37 200 258 76 30 chr11 22215808 22215874 -126567598 + L3 LINE CR1 1507 1575 -2 214 337 48 24 chr11 22216586 22216669 -126566803 - MIR SINE MIR -107 101 17 914 200 55 0 chr11 22216688 22216853 -126566619 - MER5A DNA MER1_type -15 174 1 280 208 269 23 chr11 22216982 22217112 -126566360 + Charlie8 DNA MER1_type 70 231 -2186 228 231 115 39 chr11 22217206 22217284 -126566188 - MIR SINE MIR -12 250 167 433 158 17 0 chr11 22217315 22217435 -126566037 + (TA)n Simple_repeat Simple_repeat 1 122 0 835 285 45 18 chr11 22217587 22217808 -126565664 - MIR SINE MIR -35 227 1 237 384 24 24 chr11 22217843 22217968 -126565504 - MIR3 SINE MIR -48 160 36 558 237 59 18 chr11 22218090 22218259 -126565213 + MER5B DNA MER1_type 3 178 0 302 393 16 8 chr11 22218898 22219020 -126564452 + L2 LINE L2 3104 3226 -46 245 33 0 0 chr11 22219455 22219509 -126563963 - AluSp/q SINE Alu 0 308 255 630 282 160 51 chr11 22219675 22219709 -126563763 + MLT1H LTR MaLR 110 139 -410 2048 205 75 16 chr11 22219709 22220148 -126563324 - MLT1C LTR MaLR 0 467 3 630 282 160 51 chr11 22220148 22220507 -126562965 + MLT1H LTR MaLR 139 546 -3 766 295 15 75 chr11 22220961 22221361 -126562111 - L3 LINE CR1 -1 1576 1201 2138 116 10 0 chr11 22222063 22222364 -126561108 + AluSc SINE Alu 1 304 -5 254 363 25 0 chr11 22222405 22222485 -126560987 + MIR SINE MIR 49 130 -132 27 62 0 0 chr11 22222485 22222533 -126560939 + AT_rich Low_complexity Low_complexity 1 48 0 214 358 161 7 chr11 22222819 22222956 -126560516 + MIR3 SINE MIR 39 196 -12 627 282 68 19 chr11 22223521 22223727 -126559745 - MIR SINE MIR -14 248 33 1737 163 0 17 chr11 22223805 22224115 -126559357 + AluSx SINE Alu 1 305 0 2195 160 13 21 chr11 22224279 22224352 -126559120 + MSTA LTR MaLR 1 73 -355 2211 149 6 8 chr11 22224352 22224708 -126558764 - THE1A LTR MaLR 0 355 1 2195 160 13 21 chr11 22224708 22225008 -126558464 + MSTA LTR MaLR 73 371 -57 1998 47 12 0 chr11 22225015 22225268 -126558204 - L1PA5 LINE L1 0 6154 5899 2384 38 10 0 chr11 22225268 22225559 -126557913 + L1PA5 LINE L1 5592 5885 -270 468 133 3 13 chr11 22225559 22225641 -126557831 + MSTA LTR MaLR 280 428 0 * 1398 217 114 37 chr11 22225641 22226062 -126557410 + MLT1D LTR MaLR 50 503 -2 243 224 17 0 chr11 22226628 22226686 -126556786 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 266 266 112 21 chr11 22227098 22227241 -126556231 + L1ME LINE L1 5326 5481 -640 282 236 112 28 chr11 22227325 22227503 -126555969 + L1ME LINE L1 5641 5833 -288 22 35 0 0 chr11 22227694 22227723 -126555749 + AT_rich Low_complexity Low_complexity 1 29 0 2106 131 3 0 chr11 22228459 22228764 -126554708 - AluSx SINE Alu -5 307 2 1405 245 54 28 chr11 22230900 22231366 -126552106 - L1ME1 LINE L1 -9 6157 5680 2068 182 9 36 chr11 22231811 22231868 -126551604 + L1MB5 LINE L1 5740 5797 -377 1961 189 76 2 chr11 22231868 22232264 -126551208 + MSTB LTR MaLR 2 426 0 2068 182 9 36 chr11 22232264 22232645 -126550827 + L1MB5 LINE L1 5797 6166 -8 236 333 0 0 chr11 22233084 22233153 -126550319 + MIR SINE MIR 183 251 -11 389 301 133 12 chr11 22234294 22234467 -126549005 - MIR SINE MIR -21 241 48 387 41 0 0 chr11 22234645 22234694 -126548778 + (TG)n Simple_repeat Simple_repeat 2 50 0 3784 169 44 22 chr11 22234705 22234832 -126548640 - L1MA9 LINE L1 -5 6195 6072 348 43 0 0 chr11 22234832 22234878 -126548594 + (TG)n Simple_repeat Simple_repeat 2 47 0 3784 169 44 22 chr11 22234878 22235263 -126548209 - L1MA9 LINE L1 -128 6072 5656 306 0 0 0 chr11 22235263 22235297 -126548175 + (CA)n Simple_repeat Simple_repeat 2 35 0 3784 169 44 22 chr11 22235297 22235598 -126547874 - L1MA9 LINE L1 -544 5656 5363 512 136 123 0 chr11 22235599 22235680 -126547792 - AluSg SINE Alu -30 280 190 1020 91 0 8 chr11 22235681 22235813 -126547659 - AluSg SINE Alu -179 131 1 4585 198 31 16 chr11 22235814 22236363 -126547109 - L1MA9 LINE L1 -743 5291 4752 2658 128 9 42 chr11 22236363 22236810 -126546662 + MSTB1 LTR MaLR 1 432 0 4585 198 31 16 chr11 22236810 22237475 -126545997 - L1MA9 LINE L1 -1282 4752 4144 3549 271 31 48 chr11 22237500 22239604 -126543868 - L1MA9 LINE L1 -4289 1745 11 343 277 102 78 chr11 22239613 22239869 -126543603 + L2 LINE L2 3048 3309 -4 534 302 13 13 chr11 22240063 22240212 -126543260 - MIR SINE MIR -86 176 28 200 118 29 0 chr11 22240358 22240392 -126543080 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 978 110 7 0 chr11 22241164 22241300 -126542172 - MER1B DNA MER1_type 0 339 203 425 263 39 58 chr11 22241732 22241991 -126541481 + MIR SINE MIR 13 261 -1 1442 61 11 0 chr11 22242637 22242818 -126540654 + L1PA5 LINE L1 5964 6146 -8 324 0 0 0 chr11 22243101 22243137 -126540335 + (CA)n Simple_repeat Simple_repeat 2 37 0 230 341 78 31 chr11 22243338 22243467 -126540005 + MIR SINE MIR 86 220 -42 21 0 0 0 chr11 22243666 22243687 -126539785 + AT_rich Low_complexity Low_complexity 1 21 0 4040 38 4 2 chr11 22244358 22244861 -126538611 + L1PA4 LINE L1 5652 6155 0 461 328 59 16 chr11 22245285 22245471 -126538001 - MIR SINE MIR -35 227 34 1981 303 118 38 chr11 22246159 22246845 -126536627 + L2 LINE L2 1927 2557 -756 1536 201 14 3 chr11 22246845 22247134 -126536338 - AluJo SINE Alu -20 292 1 1981 303 118 38 chr11 22247134 22247722 -126535750 + L2 LINE L2 2557 3313 0 891 225 42 50 chr11 22248121 22248366 -126535106 - MLT1A2 LTR MaLR -5 369 125 2503 154 49 5 chr11 22248366 22248776 -126534696 - MSTA LTR MaLR 0 428 1 891 225 42 50 chr11 22248776 22248792 -126534680 - MLT1A2 LTR MaLR -249 125 110 924 150 12 6 chr11 22248793 22248953 -126534519 - MSTA-int LTR MaLR -16 1635 1475 6478 184 11 18 chr11 22248961 22249099 -126534373 - MSTA-int LTR MaLR -466 1185 1047 1836 157 122 40 chr11 22249099 22249494 -126533978 - MSTA LTR MaLR 0 428 2 6478 184 11 18 chr11 22249494 22250175 -126533297 - MSTA-int LTR MaLR -604 1047 375 2235 123 0 7 chr11 22250175 22250485 -126532987 + AluSc SINE Alu 1 308 -1 6478 184 11 18 chr11 22250485 22250858 -126532614 - MSTA-int LTR MaLR -1276 375 1 2481 167 21 0 chr11 22250863 22251282 -126532190 - MSTA LTR MaLR 0 428 1 473 204 133 0 chr11 22251282 22251395 -126532077 - MLT1A2 LTR MaLR -244 130 3 305 309 65 8 chr11 22251779 22251902 -126531570 + L2 LINE L2 3182 3311 -2 249 277 0 0 chr11 22252228 22252293 -126531179 - MIR SINE MIR -18 244 180 487 345 78 35 chr11 22253282 22253717 -126529755 + L3b LINE CR1 1117 1570 -13 1337 214 108 52 chr11 22254294 22254349 -126529123 - MER63B DNA MER1_type -633 429 379 2566 58 0 3 chr11 22254349 22254657 -126528815 - AluY SINE Alu -3 308 2 1337 214 108 52 chr11 22254657 22255007 -126528465 - MER63B DNA MER1_type -683 379 1 242 278 0 31 chr11 22256417 22256514 -126526958 + GA-rich Low_complexity Low_complexity 3 96 0 236 245 0 0 chr11 22256623 22256676 -126526796 + GA-rich Low_complexity Low_complexity 2 54 0 347 319 123 54 chr11 22256686 22257093 -126526379 + L2 LINE L2 2423 2857 -457 24 0 0 0 chr11 22257433 22257457 -126526015 + AT_rich Low_complexity Low_complexity 1 24 0 340 152 76 0 chr11 22258632 22258711 -126524761 - L1PA15 LINE L1 0 6165 6081 489 152 20 10 chr11 22258796 22258895 -126524577 - MER53 DNA DNA -68 121 22 397 146 24 12 chr11 22258822 22258904 -126524568 + MER53 DNA DNA 105 187 -2 * 23 54 0 0 chr11 22259203 22259240 -126524232 + AT_rich Low_complexity Low_complexity 1 37 0 427 339 41 6 chr11 22259316 22259487 -126523985 - MIR SINE MIR -57 205 29 391 286 29 9 chr11 22260448 22260553 -126522919 - L2 LINE L2 -44 3228 3122 183 179 0 0 chr11 22261484 22261512 -126521960 + L2 LINE L2 1784 1811 -1503 2256 89 6 0 chr11 22261741 22262065 -126521407 - pTR5 LTR ERV1 -2047 391 66 269 237 41 21 chr11 22262065 22262162 -126521310 - LTR30 LTR ERV1 -80 642 544 2379 153 94 68 chr11 22262162 22262986 -126520486 - pTR5 LTR ERV1 -413 2025 743 251 366 122 17 chr11 22262989 22263284 -126520188 - L2 LINE L2 -1880 1434 1109 7074 193 28 4 chr11 22263571 22265885 -126517587 - L1PA15 LINE L1 0 6816 4441 2508 125 11 3 chr11 22265885 22266246 -126517226 - THE1B LTR MaLR 0 364 1 7074 193 28 4 chr11 22266246 22266346 -126517126 - L1PA15 LINE L1 -2375 4441 4345 4002 243 35 34 chr11 22266346 22266526 -126516946 - L1PA15 LINE L1 -3402 3395 3217 1672 91 18 0 chr11 22266526 22266746 -126516726 + AluY SINE Alu 85 308 -3 4002 243 35 34 chr11 22266746 22267183 -126516289 - L1PA15 LINE L1 -3580 3217 2782 1630 190 14 7 chr11 22267183 22267462 -126516010 + AluSx SINE Alu 1 281 -31 4002 243 35 34 chr11 22267462 22268944 -126514528 - L1PA15 LINE L1 -4015 2782 1285 314 342 25 77 chr11 22269047 22269243 -126514229 - L1PA15 LINE L1 -6073 714 529 2213 124 0 52 chr11 22269243 22269605 -126513867 - THE1C LTR MaLR -30 345 3 7117 141 13 5 chr11 22269605 22270693 -126512779 - THE1C-int LTR MaLR -1 1579 483 294 95 0 0 chr11 22270693 22270735 -126512737 + (T)n Simple_repeat Simple_repeat 1 42 0 180 0 0 0 chr11 22270877 22270897 -126512575 + (T)n Simple_repeat Simple_repeat 1 20 0 466 304 69 16 chr11 22271110 22271357 -126512115 + L1ME LINE L1 5555 5814 -307 2193 116 10 7 chr11 22271732 22272035 -126511437 + AluSx SINE Alu 1 304 -8 1140 286 61 23 chr11 22272377 22272719 -126510753 + L1M4b LINE L1 96 450 -6409 1057 272 47 3 chr11 22272720 22273058 -126510414 + L1M4b LINE L1 1036 1388 -5471 1061 297 72 41 chr11 22273062 22273586 -126509886 + L1M4b LINE L1 1434 1995 -4964 1417 208 7 44 chr11 22273586 22273884 -126509588 + AluJo SINE Alu 1 287 -25 1061 297 72 41 chr11 22273884 22274207 -126509265 + L1M4b LINE L1 1995 2307 -4652 1487 105 0 0 chr11 22274208 22274399 -126509073 + AluSg SINE Alu 1 191 -119 556 90 0 56 chr11 22274399 22274488 -126508984 + Alu SINE Alu 224 300 -10 189 0 0 0 chr11 22274624 22274645 -126508827 + (A)n Simple_repeat Simple_repeat 1 21 0 237 270 56 107 chr11 22274650 22274920 -126508552 + L1M4b LINE L1 2445 2700 -4438 39 0 0 0 chr11 22275064 22275103 -126508369 + AT_rich Low_complexity Low_complexity 1 39 0 392 301 60 15 chr11 22275176 22275512 -126507960 + L1M4b LINE L1 2655 3005 -3954 * 702 288 48 46 chr11 22275502 22276048 -126507424 + L1M4b LINE L1 3782 4328 -2629 3345 230 69 8 chr11 22276070 22277058 -126506414 + L1M4b LINE L1 4511 5558 -1399 248 318 24 12 chr11 22277272 22277357 -126506115 - LTR67 LTR ERVL -470 87 2 52 41 0 0 chr11 22277507 22277580 -126505892 + AT_rich Low_complexity Low_complexity 1 73 0 21 0 0 0 chr11 22277691 22277712 -126505760 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr11 22278502 22278524 -126504948 + AT_rich Low_complexity Low_complexity 1 22 0 261 196 0 0 chr11 22278563 22278614 -126504858 - L2 LINE L2 0 3313 3263 198 0 0 0 chr11 22278703 22278725 -126504747 + (TG)n Simple_repeat Simple_repeat 2 23 0 579 108 0 0 chr11 22278756 22278849 -126504623 + (CA)n Simple_repeat Simple_repeat 1 93 0 772 328 64 25 chr11 22279015 22279685 -126503787 + L1M4 LINE L1 2123 2818 -3328 373 281 59 15 chr11 22279944 22280079 -126503393 + MER93a LTR ERV1 259 399 -3 347 335 60 62 chr11 22282322 22282395 -126501077 + MER93a-int LTR ERV1 152 224 -4423 2317 61 0 0 chr11 22282395 22282720 -126500752 + AluY SINE Alu 1 325 0 347 335 60 62 chr11 22282720 22283078 -126500394 + MER93a-int LTR ERV1 224 583 -4064 1042 303 30 81 chr11 22284140 22285482 -126497990 + MER57-int LTR ERV1 2093 6132 -1405 270 275 64 18 chr11 22286751 22286860 -126496612 + MER57-int LTR ERV1 7246 7359 -360 290 270 31 31 chr11 22286954 22287126 -126496346 + MER57-int LTR ERV1 6586 6667 -134 309 242 74 0 chr11 22287233 22287328 -126496144 + MER57-int LTR ERV1 7060 7161 -376 698 250 0 13 chr11 22287396 22287548 -126495924 + AluJo SINE Alu 6 155 -157 233 219 0 31 chr11 22287550 22287614 -126495858 - FRAM SINE Alu -65 101 40 577 205 0 0 chr11 22287623 22287735 -126495737 + FRAM SINE Alu 58 169 -7 652 278 45 38 chr11 22287812 22287871 -126495601 + MER93a LTR ERV1 131 188 -214 1497 208 100 8 chr11 22287871 22288232 -126495240 + MSTD LTR MaLR 1 394 -2 652 278 45 38 chr11 22288232 22288438 -126495034 + MER93a LTR ERV1 188 398 -4 438 313 85 41 chr11 22288439 22288803 -126494669 + L1M4 LINE L1 2813 3192 -2954 473 306 83 33 chr11 22289032 22289430 -126494042 + L1M4 LINE L1 3544 3961 -2185 588 288 27 27 chr11 22289443 22289627 -126493845 - L2 LINE L2 -519 2795 2612 387 0 0 0 chr11 22290447 22290490 -126492982 + (CA)n Simple_repeat Simple_repeat 1 43 0 192 362 43 36 chr11 22290764 22290902 -126492570 + L2 LINE L2 2916 3054 -218 579 185 193 0 chr11 22290939 22291058 -126492414 - AluSq/x SINE Alu -171 142 1 1387 212 37 76 chr11 22291059 22291441 -126492031 - MSTD LTR MaLR -29 367 1 599 239 0 15 chr11 22291441 22291573 -126491899 + MLT1C LTR MaLR 338 467 0 1835 153 0 7 chr11 22292161 22292449 -126491023 - AluSx SINE Alu -26 286 1 268 279 9 18 chr11 22292485 22292596 -126490876 + HAL1 LINE L1 1531 1640 -867 251 243 48 48 chr11 22293052 22293155 -126490317 + HAL1 LINE L1 2405 2507 0 222 190 17 17 chr11 22293361 22293419 -126490053 + A-rich Low_complexity Low_complexity 3 60 0 721 271 124 56 chr11 22293775 22294066 -126489406 + L1M4 LINE L1 2740 3010 -3136 2305 53 0 3 chr11 22294066 22294375 -126489097 + AluY SINE Alu 2 309 0 721 271 124 56 chr11 22294375 22294614 -126488858 + L1M4 LINE L1 3010 3307 -2839 22 56 0 0 chr11 22294866 22294902 -126488570 + AT_rich Low_complexity Low_complexity 1 36 0 216 97 0 0 chr11 22294955 22294986 -126488486 + (TCCA)n Simple_repeat Simple_repeat 1 31 0 237 247 14 7 chr11 22295187 22295297 -126488175 + (TA)n Simple_repeat Simple_repeat 1 114 -33 894 248 126 16 chr11 22295297 22295607 -126487865 + MER2 DNA MER2_type 1 344 0 237 247 14 7 chr11 22295607 22295642 -126487830 + (TA)n Simple_repeat Simple_repeat 114 147 0 207 282 107 93 chr11 22296264 22296480 -126486992 + L2 LINE L2 3028 3246 -26 271 0 0 0 chr11 22296906 22296945 -126486527 + AluY SINE Alu 270 308 0 212 0 36 0 chr11 22297100 22297128 -126486344 + (TA)n Simple_repeat Simple_repeat 1 29 0 2234 234 80 11 chr11 22297747 22298359 -126485113 - MLT1E1 LTR MaLR 0 654 1 183 267 0 0 chr11 22298411 22298486 -126484986 + (TATATG)n Simple_repeat Simple_repeat 4 78 0 241 296 62 0 chr11 22299108 22299189 -126484283 - MIR SINE MIR -114 148 63 339 319 115 0 chr11 22299595 22299777 -126483695 - MIR SINE MIR -8 254 52 365 342 65 16 chr11 22300801 22300985 -126482487 + MIR SINE MIR 14 206 -56 6083 181 40 9 chr11 22301034 22302481 -126480991 - L1MA5 LINE L1 0 6300 4774 2108 125 0 0 chr11 22302481 22302776 -126480696 - AluSx SINE Alu -17 295 1 6083 181 40 9 chr11 22302776 22303562 -126479910 - L1MA5 LINE L1 -1526 4774 4013 273 277 108 0 chr11 22305165 22305248 -126478224 - MIR SINE MIR -4 258 167 229 328 30 38 chr11 22305760 22305891 -126477581 + LTR16C LTR ERVL 362 491 0 1167 243 55 17 chr11 22306158 22306535 -126476937 - L1ME2 LINE L1 -44 6120 5735 398 175 58 19 chr11 22306788 22306891 -126476581 - MER103 DNA DNA -59 107 1 204 196 0 39 chr11 22306941 22306992 -126476480 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 21 57 0 0 chr11 22307312 22307347 -126476125 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr11 22311021 22311044 -126472428 + AT_rich Low_complexity Low_complexity 1 23 0 1801 200 103 77 chr11 22311668 22312367 -126471105 - MER50 LTR ERV1 -8 726 10 311 306 83 32 chr11 22312367 22312524 -126470948 + MIR SINE MIR 85 249 -13 414 281 74 0 chr11 22313341 22313462 -126470010 - MIR SINE MIR -49 213 84 598 196 105 0 chr11 22313679 22313726 -126469746 + AluJo SINE Alu 72 113 -199 195 42 0 0 chr11 22313726 22313750 -126469722 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 598 196 105 0 chr11 22313750 22313835 -126469637 + AluJo SINE Alu 113 218 -94 386 225 11 11 chr11 22313866 22313975 -126469497 + AluJ/FRAM SINE Alu 232 296 -6 22 0 0 0 chr11 22313983 22314005 -126469467 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr11 22314028 22314066 -126469406 + AT_rich Low_complexity Low_complexity 1 38 0 567 195 26 32 chr11 22314125 22314279 -126469193 - L1MA8 LINE L1 -10 6281 6129 13917 174 54 22 chr11 22314299 22316503 -126466969 - L1MA2 LINE L1 0 7723 5591 2042 133 0 3 chr11 22316503 22316796 -126466676 + AluSg SINE Alu 4 295 -15 13917 174 54 22 chr11 22316796 22318330 -126465142 - L1MA2 LINE L1 -2132 5591 4108 2007 144 133 13 chr11 22318330 22318712 -126464760 + MSTA LTR MaLR 1 428 0 13917 174 54 22 chr11 22318712 22320195 -126463277 - L1MA2 LINE L1 -3615 4108 2325 17574 64 12 7 chr11 22320196 22323400 -126460072 - L1PA6 LINE L1 0 6154 2973 4346 220 38 14 chr11 22323401 22324390 -126459082 - L1MA2 LINE L1 -6534 1031 19 11239 208 39 18 chr11 22324396 22327989 -126455483 - L1MA8 LINE L1 -156 6135 2459 488 321 30 18 chr11 22327989 22328157 -126455315 + L2 LINE L2 2754 2923 -391 239 89 44 0 chr11 22329982 22330027 -126453445 - L1PA4 LINE L1 -2 6153 6107 236 30 30 0 chr11 22331366 22331399 -126452073 + (TTG)n Simple_repeat Simple_repeat 3 36 0 1977 136 58 3 chr11 22331935 22332265 -126451207 + MER7A DNA MER2_type 1 346 0 2286 111 23 9 chr11 22332353 22332703 -126450769 - THE1A LTR MaLR 0 355 1 11191 109 4 6 chr11 22332703 22334286 -126449186 - THE1A-int LTR MaLR 0 1580 1 358 125 0 0 chr11 22334286 22334334 -126449138 - THE1A LTR MaLR 0 355 308 1428 161 47 29 chr11 22334472 22334751 -126448721 + AluJb SINE Alu 27 310 -2 1821 165 64 14 chr11 22335941 22336298 -126447174 - THE1C LTR MaLR 0 375 1 264 326 153 7 chr11 22336402 22336546 -126446926 + MLT1K LTR MaLR 12 176 -412 2038 241 64 2 chr11 22336570 22337105 -126446367 - L1MB7 LINE L1 -25 6159 5592 983 269 36 34 chr11 22337109 22337466 -126446006 - L1M4 LINE L1 -6183 359 2 669 297 113 19 chr11 22337744 22338010 -126445462 + LTR16C LTR ERVL 198 488 -3 275 263 0 32 chr11 22338170 22338265 -126445207 + MLT1K LTR MaLR 495 586 -2 319 21 42 0 chr11 22338288 22338336 -126445136 + (CAAA)n Simple_repeat Simple_repeat 4 53 0 279 274 45 78 chr11 22338395 22338574 -126444898 - MER110A LTR ERV1 -45 423 251 32 0 0 0 chr11 22338942 22338974 -126444498 + AT_rich Low_complexity Low_complexity 1 32 0 350 318 151 0 chr11 22339595 22339721 -126443751 + MIR SINE MIR 48 192 -70 796 210 90 57 chr11 22339734 22340221 -126443251 + LTR18A LTR ERVL 1 608 -6 1334 177 12 10 chr11 22340228 22340493 -126442979 + HERVL18 LTR ERVL 8 304 -5743 878 223 178 5 chr11 22340478 22340675 -126442797 + HERVL18 LTR ERVL 463 693 -5354 * 2978 156 4 2 chr11 22340675 22341144 -126442328 + HERVL18 LTR ERVL 1324 1793 -4254 2503 47 0 0 chr11 22341164 22341461 -126442011 - AluY SINE Alu -11 300 4 6331 151 7 12 chr11 22341488 22342900 -126440572 + HERVL18 LTR ERVL 2119 3579 -2468 1603 136 8 4 chr11 22342902 22343145 -126440327 + HERVL18 LTR ERVL 4394 4637 -1410 744 230 5 108 chr11 22343205 22343409 -126440063 + LTR18A LTR ERVL 1 183 -174 579 242 95 28 chr11 22343479 22343690 -126439782 + LTR18B LTR ERVL 383 607 -7 209 255 0 0 chr11 22344654 22344701 -126438771 - L2 LINE L2 0 3313 3267 475 320 48 35 chr11 22344730 22344958 -126438514 - MIR SINE MIR -30 232 2 4952 157 35 4 chr11 22345372 22346614 -126436858 - L1PA15 LINE L1 -2 6163 4897 180 0 0 0 chr11 22347326 22347346 -126436126 + (T)n Simple_repeat Simple_repeat 1 20 0 405 0 0 0 chr11 22347845 22347890 -126435582 + (CA)n Simple_repeat Simple_repeat 1 45 0 193 362 43 36 chr11 22348165 22348303 -126435169 + L2 LINE L2 2916 3054 -218 257 247 143 0 chr11 22348448 22348525 -126434947 - L2 LINE L2 -1 3312 3225 212 367 130 5 chr11 22348522 22348737 -126434735 - L2 LINE L2 -229 3084 2843 * 2136 27 0 15 chr11 22349096 22349357 -126434115 + L1PA4 LINE L1 5895 6151 -4 349 198 165 0 chr11 22349374 22349465 -126434007 + L1PB4 LINE L1 6051 6156 0 1053 30 0 8 chr11 22350373 22350506 -126432966 - L1PA5 LINE L1 0 6154 6023 256 280 27 0 chr11 22351377 22351452 -126432020 - MIR SINE MIR -115 147 71 2020 119 0 14 chr11 22351502 22351829 -126431643 + AluSc SINE Alu 1 323 0 970 265 136 10 chr11 22351918 22352447 -126431025 - MER69 DNA AcHobo -2 2524 1920 * 1408 275 39 32 chr11 22352442 22352875 -126430597 - MER69 DNA AcHobo -790 436 1 2280 236 67 21 chr11 22353424 22354048 -126429424 + MLT1E1 LTR MaLR 1 653 -1 1386 203 56 53 chr11 22354366 22354434 -126429038 + MLT2C1 LTR ERVL 1 67 -330 2042 124 59 31 chr11 22354434 22354788 -126428684 + THE1B LTR MaLR 1 364 0 1386 203 56 53 chr11 22354788 22355113 -126428359 + MLT2C1 LTR ERVL 67 395 -2 2380 120 11 0 chr11 22356203 22356552 -126426920 - THE1A LTR MaLR -2 353 1 292 134 16 47 chr11 22356683 22356810 -126426662 + (TA)n Simple_repeat Simple_repeat 2 124 0 1309 257 64 27 chr11 22356847 22357252 -126426220 - MLT1C LTR MaLR -47 420 1 6716 65 0 77 chr11 22357997 22359107 -126424365 - L1PA7 LINE L1 -1 6153 5070 14520 87 6 1 chr11 22359107 22361131 -126422341 + L1P LINE L1 2348 4381 -1765 2159 172 28 42 chr11 22361136 22361567 -126421905 - LTR3 LTR ERVK -3 429 5 4686 98 4 1 chr11 22361568 22362255 -126421217 + L1P LINE L1 4373 5061 -1085 275 275 13 64 chr11 22362333 22362489 -126420983 + MER61E LTR ERV1 98 234 -379 1089 183 20 0 chr11 22362509 22362706 -126420766 + MER61E LTR ERV1 341 541 -28 599 276 67 33 chr11 22363037 22363516 -126419956 + L1ME LINE L1 519 1013 -5057 1266 248 66 28 chr11 22363557 22363734 -126419738 - L1MC4 LINE L1 -321 7563 7394 1503 191 7 36 chr11 22363734 22364037 -126419435 - AluJb SINE Alu -12 300 7 1266 248 66 28 chr11 22364037 22364397 -126419075 - L1MC4 LINE L1 -490 7394 6882 2500 205 58 51 chr11 22364397 22365086 -126418386 - LTR8A LTR ERV1 0 727 34 2968 266 103 61 chr11 22365114 22367491 -126415981 - L1MC4a LINE L1 -743 5403 4406 227 224 0 0 chr11 22367536 22367594 -126415878 - L1 LINE L1 -1820 4326 4269 2261 94 0 10 chr11 22368479 22368786 -126414686 + AluY SINE Alu 1 304 -7 370 311 82 22 chr11 22369230 22369413 -126414059 + MIR SINE MIR 20 213 -49 323 311 98 52 chr11 22370016 22370209 -126413263 - MIR SINE MIR -58 204 3 3068 176 57 2 chr11 22372274 22372877 -126410595 - L1MD3 LINE L1 0 8413 6121 778 215 107 8 chr11 22372885 22373146 -126410326 - L1MD3 LINE L1 -1511 5053 4767 719 206 0 15 chr11 22373146 22373282 -126410190 + AluJo SINE Alu 1 134 -178 1868 244 70 20 chr11 22373290 22373836 -126409636 - L1MD3 LINE L1 -1787 4777 4193 1180 179 179 0 chr11 22373836 22374121 -126409351 - MER44D DNA MER2_type 0 609 4 1868 244 70 20 chr11 22374121 22374213 -126409259 - L1MD3 LINE L1 -2371 4193 4107 1744 221 104 10 chr11 22374207 22374506 -126408966 - L1MD3 LINE L1 -4598 1966 1697 * 186 103 0 0 chr11 22374506 22374535 -126408937 + (TG)n Simple_repeat Simple_repeat 2 30 0 1744 221 104 10 chr11 22374535 22374873 -126408599 - L1MD3 LINE L1 -4867 1697 1182 537 135 0 0 chr11 22374874 22374963 -126408509 + (TTCCC)n Simple_repeat Simple_repeat 4 92 0 2095 261 73 67 chr11 22375570 22376087 -126407385 + L1MEc LINE L1 252 765 -5450 2197 64 7 40 chr11 22376087 22376384 -126407088 + AluY SINE Alu 21 307 -4 2095 261 73 67 chr11 22376384 22376574 -126406898 + L1MEc LINE L1 765 952 -5263 2187 116 0 3 chr11 22376574 22376875 -126406597 + AluSx SINE Alu 1 300 -12 2095 261 73 67 chr11 22376875 22377328 -126406144 + L1MEc LINE L1 952 1371 -4844 933 314 19 14 chr11 22377813 22378179 -126405293 - L1MD3 LINE L1 -5674 371 4 23 0 0 0 chr11 22378305 22378328 -126405144 + AT_rich Low_complexity Low_complexity 1 23 0 1504 167 8 15 chr11 22378336 22378600 -126404872 - AluJo SINE Alu -23 289 28 2403 100 0 3 chr11 22379164 22379474 -126403998 - AluSc SINE Alu 0 309 1 200 273 0 0 chr11 22379541 22379585 -126403887 - MIR SINE MIR -108 154 111 3043 240 71 5 chr11 22381387 22382550 -126400922 - L1ME LINE L1 -689 5477 4247 962 329 89 36 chr11 22382777 22383443 -126400029 - L2 LINE L2 -339 2975 2275 282 260 115 77 chr11 22385302 22385510 -126397962 + MLT1L LTR MaLR 169 384 -231 2001 140 33 0 chr11 22385656 22385956 -126397516 - AluSg SINE Alu 0 310 1 2723 20 0 0 chr11 22385977 22386281 -126397191 - AluYa5 SINE Alu -7 304 1 5496 204 57 112 chr11 22387547 22388677 -126394795 + L1M1 LINE L1 597 1565 -6000 * 6458 36 1 0 chr11 22387894 22388677 -126394795 - L1PA4 LINE L1 -977 5169 4386 7492 33 0 1 chr11 22388677 22389693 -126393779 + L1PA4 LINE L1 5138 6152 -3 5496 204 57 112 chr11 22389693 22390611 -126392861 + L1M1 LINE L1 1565 2532 -5033 186 71 0 0 chr11 22390611 22390639 -126392833 + (TA)n Simple_repeat Simple_repeat 2 29 0 303 49 0 0 chr11 22390644 22390685 -126392787 + (GA)n Simple_repeat Simple_repeat 1 41 0 324 0 0 0 chr11 22391344 22391380 -126392092 + (TA)n Simple_repeat Simple_repeat 1 36 0 6616 196 36 90 chr11 22391401 22394000 -126389472 + L1M1 LINE L1 2531 5267 -2298 663 127 25 68 chr11 22394000 22394118 -126389354 + AluJb SINE Alu 4 116 -196 221 0 0 33 chr11 22394119 22394149 -126389323 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 6616 196 36 90 chr11 22394149 22394956 -126388516 + L1M1 LINE L1 5266 5837 -1728 4012 115 37 5 chr11 22394956 22395600 -126387872 + L1MA3 LINE L1 5633 6297 -8 230 329 82 44 chr11 22395972 22396130 -126387342 - MER5B DNA MER1_type -14 164 1 308 298 93 13 chr11 22396131 22396282 -126387190 - L2 LINE L2 -546 2768 2606 285 313 44 6 chr11 22396320 22396502 -126386970 - L2 LINE L2 -411 2903 2715 198 0 0 0 chr11 22396726 22396748 -126386724 + (TA)n Simple_repeat Simple_repeat 2 23 0 3506 231 44 50 chr11 22396857 22397714 -126385758 + L1PA12 LINE L1 308 1159 -6422 14122 216 23 10 chr11 22397714 22400958 -126382514 + L1P LINE L1 1949 5233 -913 1173 153 91 18 chr11 22400944 22401218 -126382254 + L1 LINE L1 3220 3513 -2633 * 866 203 69 61 chr11 22401456 22401831 -126381641 + LTR49-int LTR ERV1 2058 4083 -2593 2055 119 3 17 chr11 22401841 22402143 -126381329 - AluSx SINE Alu -14 298 1 631 180 21 72 chr11 22402428 22402622 -126380850 + LTR49-int LTR ERV1 3547 3730 -2868 1270 212 72 64 chr11 22402701 22402862 -126380610 + LTR49-int LTR ERV1 2471 2629 -2307 1985 94 0 0 chr11 22402862 22403138 -126380334 + AluSg SINE Alu 38 313 0 1270 212 72 64 chr11 22403138 22403176 -126380296 + LTR49-int LTR ERV1 2629 2665 -2271 1497 180 20 36 chr11 22403176 22403482 -126379990 - AluJo SINE Alu -11 301 1 1270 212 72 64 chr11 22403482 22404598 -126378874 + LTR49-int LTR ERV1 2665 3631 -1305 1119 118 0 0 chr11 22404598 22404759 -126378713 - MLT2A2 LTR ERVL 0 453 293 390 240 50 0 chr11 22404764 22404864 -126378608 + LTR49-int LTR ERV1 4927 5031 -1300 395 208 0 0 chr11 22405323 22405429 -126378043 + (TA)n Simple_repeat Simple_repeat 2 107 0 241 196 22 43 chr11 22405439 22405531 -126377941 + L1MC4 LINE L1 6614 6703 -1339 258 353 140 7 chr11 22405925 22406075 -126377397 + MIR SINE MIR 87 256 -6 483 296 24 18 chr11 22406158 22406327 -126377145 - MER117 DNA MER1_type -27 170 1 1726 214 100 21 chr11 22406566 22407034 -126376438 + MLT1D LTR MaLR 1 505 0 376 274 164 20 chr11 22407231 22407377 -126376095 + MIR SINE MIR 81 247 -15 1503 207 10 20 chr11 22408603 22408898 -126374574 - AluJo SINE Alu -20 292 1 189 121 0 0 chr11 22409831 22409864 -126373608 + (TTG)n Simple_repeat Simple_repeat 1 33 0 221 221 9 35 chr11 22409888 22410001 -126373471 + CT-rich Low_complexity Low_complexity 2 111 0 2342 82 0 0 chr11 22410217 22410509 -126372963 - AluSq SINE Alu -11 302 11 780 266 40 13 chr11 22410697 22410752 -126372720 + MIR SINE MIR 27 79 -183 186 103 0 0 chr11 22410752 22410781 -126372691 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 780 266 40 13 chr11 22410781 22410951 -126372521 + MIR SINE MIR 79 258 -4 192 40 0 0 chr11 22412293 22412318 -126371154 + (CA)n Simple_repeat Simple_repeat 2 26 0 243 254 0 45 chr11 22412673 22412740 -126370732 - MER103 DNA DNA -41 125 62 180 250 58 0 chr11 22413827 22413879 -126369593 - MIR3 SINE MIR 0 208 154 206 158 53 21 chr11 22414107 22414202 -126369270 + GA-rich Low_complexity Low_complexity 2 99 0 208 229 21 0 chr11 22414233 22414281 -126369191 + L2 LINE L2 3263 3311 -2 244 243 56 84 chr11 22414339 22414390 -126369082 + MIR SINE MIR 159 210 -52 183 80 0 0 chr11 22414390 22414415 -126369057 + (TATATG)n Simple_repeat Simple_repeat 2 26 0 244 243 56 84 chr11 22414415 22414470 -126369002 + MIR SINE MIR 210 262 0 313 246 45 0 chr11 22414519 22414603 -126368869 - MIR SINE MIR -37 171 100 420 325 65 7 chr11 22416890 22417044 -126366428 + MER5B DNA MER1_type 10 172 -6 665 284 19 16 chr11 22417100 22417325 -126366147 + MIR SINE MIR 41 262 0 201 294 184 9 chr11 22417422 22417531 -126365941 + MIR SINE MIR 16 143 -65 338 235 51 20 chr11 22417538 22417636 -126365836 + MER58 DNA MER1_type 12 112 -103 307 225 84 0 chr11 22417628 22417699 -126365773 + MER58 DNA MER1_type 2343 2419 -1 * 478 289 169 0 chr11 22417712 22417854 -126365618 - MER5A DNA MER1_type -6 183 18 315 283 9 26 chr11 22417883 22417996 -126365476 - MER5B DNA MER1_type -67 111 1 1639 165 47 7 chr11 22418061 22418358 -126365114 + AluJb SINE Alu 1 309 -3 2168 133 0 0 chr11 22419890 22420199 -126363273 + AluSx SINE Alu 1 309 -3 666 264 6 24 chr11 22421051 22421218 -126362254 + MIR SINE MIR 99 262 0 260 300 0 67 chr11 22421363 22421453 -126362019 - MIR SINE MIR -159 103 20 194 380 39 68 chr11 22422695 22422778 -126360694 + L2 LINE L2 2927 3011 -261 1881 154 65 11 chr11 22422778 22423134 -126360338 - THE1C LTR MaLR 0 375 1 194 380 39 68 chr11 22423134 22423405 -126360067 + L2 LINE L2 3011 3271 -1 206 344 0 0 chr11 22423405 22423469 -126360003 + GA-rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chr11 22424652 22424673 -126358799 + AT_rich Low_complexity Low_complexity 1 21 0 532 236 14 14 chr11 22425024 22425164 -126358308 + MIR SINE MIR 123 262 0 882 335 55 19 chr11 22425462 22425841 -126357631 - L2 LINE L2 0 3313 2921 597 78 20 20 chr11 22427184 22427286 -126356186 + (TTCC)n Simple_repeat Simple_repeat 3 104 0 330 334 210 29 chr11 22427508 22427897 -126355575 - L2 LINE L2 -265 3048 2592 354 61 0 0 chr11 22428586 22428635 -126354837 + (CA)n Simple_repeat Simple_repeat 2 50 0 274 276 31 55 chr11 22428787 22428914 -126354558 - MER103 DNA DNA -25 141 18 1794 131 63 0 chr11 22429052 22429320 -126354152 - AluSx SINE Alu -27 285 1 411 306 64 13 chr11 22429345 22429502 -126353970 + MLT1I LTR MaLR 1 165 -244 271 253 30 63 chr11 22430036 22430149 -126353323 + MIR SINE MIR 40 153 -62 201 328 139 6 chr11 22430466 22430646 -126352826 + L2 LINE L2 1154 1357 -1957 308 296 37 58 chr11 22430727 22430916 -126352556 - L2 LINE L2 -9 3304 3120 203 318 164 0 chr11 22430948 22431058 -126352414 - L2 LINE L2 -167 3146 3019 836 286 35 12 chr11 22431060 22431315 -126352157 + MLT1J LTR MaLR 1 261 -250 1824 294 83 37 chr11 22431335 22432248 -126351224 - L2 LINE L2 -552 2762 1808 320 313 73 10 chr11 22432507 22432603 -126350869 + L2 LINE L2 3205 3306 -7 264 311 104 54 chr11 22432793 22433034 -126350438 + L2 LINE L2 2804 3056 -216 2577 134 3 0 chr11 22434202 22434576 -126348896 + THE1C LTR MaLR 1 375 0 2188 123 171 104 chr11 22434580 22435101 -126348371 + THE1C-int LTR MaLR 5 560 -1091 * 2750 140 4 24 chr11 22435099 22435562 -126347910 + THE1C-int LTR MaLR 1127 1580 0 2367 141 8 11 chr11 22435562 22435938 -126347534 + THE1C LTR MaLR 1 375 0 261 194 68 48 chr11 22436131 22436234 -126347238 + HAL1b LINE L1 767 871 -477 398 261 40 40 chr11 22436628 22436854 -126346618 + L1M4 LINE L1 2147 2372 -3774 393 302 49 35 chr11 22437068 22437353 -126346119 + L1MC4 LINE L1 6814 7102 -940 319 287 14 76 chr11 22438042 22438265 -126345207 + L1MC5 LINE L1 7704 7912 -49 595 285 111 0 chr11 22439339 22439546 -126343926 - MIR SINE MIR -1 261 32 182 211 0 0 chr11 22439548 22439586 -126343886 - MIR SINE MIR -21 241 204 387 234 7 99 chr11 22439593 22439734 -126343738 - L1M4b LINE L1 -5527 1332 1205 486 0 0 0 chr11 22439871 22439925 -126343547 + (TG)n Simple_repeat Simple_repeat 1 54 0 1810 274 133 61 chr11 22440311 22441175 -126342297 - L1M4b LINE L1 -5923 936 11 301 274 89 37 chr11 22441505 22441640 -126341832 - MIR3 SINE MIR -62 146 5 1510 185 67 3 chr11 22442155 22442453 -126341019 + MER89 LTR ERV1 240 556 -3 210 37 0 0 chr11 22442582 22442609 -126340863 + (TTG)n Simple_repeat Simple_repeat 2 28 0 335 270 157 26 chr11 22442714 22442829 -126340643 - MIR3 SINE MIR -48 160 31 277 366 25 6 chr11 22443995 22444156 -126339316 - MIR3 SINE MIR -3 205 42 416 316 32 37 chr11 22444844 22445034 -126338438 - MER5A DNA MER1_type 0 189 1 266 324 36 0 chr11 22445144 22445255 -126338217 - MIR SINE MIR -64 198 84 197 302 0 0 chr11 22445343 22445396 -126338076 - L2 LINE L2 0 3313 3261 818 228 0 0 chr11 22446181 22446343 -126337129 + FRAM SINE Alu 4 165 -11 251 358 11 0 chr11 22446659 22446754 -126336718 + MIR SINE MIR 36 131 -77 261 234 16 16 chr11 22446870 22446934 -126336538 + MIR3 SINE MIR 140 203 -5 234 0 0 0 chr11 22447596 22447622 -126335850 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 21 36 0 0 chr11 22447669 22447697 -126335775 + AT_rich Low_complexity Low_complexity 1 28 0 930 279 50 43 chr11 22448695 22449158 -126334314 - MLT1C LTR MaLR -1 466 1 17966 108 48 2 chr11 22449159 22451748 -126331724 + Charlie3 DNA MER1_type 1 2706 -4 181 211 42 99 chr11 22452327 22452398 -126331074 - L3 LINE CR1 -77 1500 1434 207 0 0 0 chr11 22452400 22452423 -126331049 + (T)n Simple_repeat Simple_repeat 1 23 0 263 247 215 11 chr11 22452519 22452612 -126330860 - MER91C DNA MER1_type 0 140 29 240 35 0 0 chr11 22452996 22453025 -126330447 + (TG)n Simple_repeat Simple_repeat 2 30 0 249 314 68 99 chr11 22453201 22453392 -126330080 + L2 LINE L2 2974 3158 -114 517 322 123 0 chr11 22453468 22453679 -126329793 + MIR SINE MIR 5 241 -21 194 129 32 0 chr11 22453718 22453749 -126329723 + L2 LINE L2 3227 3258 -14 196 311 95 0 chr11 22453755 22453829 -126329643 + L2 LINE L2 3009 3089 -183 2598 38 0 22 chr11 22454042 22454360 -126329112 + AluY SINE Alu 1 311 0 315 346 56 49 chr11 22455870 22456032 -126327440 + MIR3 SINE MIR 31 193 -15 583 298 0 0 chr11 22456137 22456278 -126327194 + MIR SINE MIR 6 146 -116 7018 117 5 25 chr11 22456968 22458071 -126325401 + Tigger1 DNA MER2_type 810 1889 -529 442 320 45 11 chr11 22458075 22458253 -126325219 - L1M4b LINE L1 -6192 667 484 970 208 9 5 chr11 22458292 22458508 -126324964 - L1MD1 LINE L1 0 6242 6026 782 208 0 26 chr11 22458522 22458676 -126324796 - AluJb SINE Alu -29 283 134 1963 178 65 16 chr11 22458679 22459112 -126324360 - L1MD1 LINE L1 -262 5980 5527 1479 209 53 70 chr11 22459120 22459317 -126324155 + MLT1B LTR MaLR 1 189 -201 2598 136 35 57 chr11 22459317 22459825 -126323647 + LOR1a LTR ERV1 1 497 0 1479 209 53 70 chr11 22459825 22460024 -126323448 + MLT1B LTR MaLR 189 390 0 1429 227 41 2 chr11 22460026 22460593 -126322879 - L1MD1 LINE L1 -723 5519 4930 1285 291 75 42 chr11 22460626 22461081 -126322391 - L1MDa LINE L1 -5592 948 510 2223 108 90 0 chr11 22461081 22461425 -126322047 + THE1C LTR MaLR 1 375 0 1285 291 75 42 chr11 22461425 22461502 -126321970 - L1MDa LINE L1 -6030 510 16 340 340 6 37 chr11 22461643 22461805 -126321667 + LTR67 LTR ERVL 132 288 -269 2887 3 0 0 chr11 22461900 22462211 -126321261 - AluYa5 SINE Alu 0 311 1 332 269 308 0 chr11 22463201 22463383 -126320089 - MIR SINE MIR 0 262 25 286 246 0 0 chr11 22463722 22463779 -126319693 + MIR SINE MIR 86 142 -66 462 316 0 0 chr11 22464171 22464285 -126319187 + MIR3 SINE MIR 56 169 -39 28 0 0 0 chr11 22464557 22464585 -126318887 + AT_rich Low_complexity Low_complexity 1 28 0 2153 106 10 0 chr11 22464891 22465184 -126318288 - AluSp SINE Alu -17 296 1 21 0 0 0 chr11 22465259 22465280 -126318192 + AT_rich Low_complexity Low_complexity 1 21 0 308 340 63 19 chr11 22465828 22465987 -126317485 + MIR3 SINE MIR 36 201 -7 375 256 53 68 chr11 22468228 22468242 -126315230 - L2 LINE L2 -5 3267 3254 2058 111 0 31 chr11 22468242 22468570 -126314902 - AluSg1 SINE Alu 0 319 1 375 256 53 68 chr11 22468570 22468687 -126314785 - L2 LINE L2 -18 3254 3137 10648 163 23 12 chr11 22468700 22470634 -126312838 - Tigger1 DNA MER2_type -4 2414 459 16183 180 39 13 chr11 22470634 22478430 -126305042 + L1MA2 LINE L1 15 7723 0 2205 175 99 7 chr11 22478447 22478882 -126304590 - Tigger1 DNA MER2_type -1943 475 1 196 180 33 115 chr11 22479389 22479450 -126304022 - MIR SINE MIR -111 151 96 468 322 13 67 chr11 22480162 22480401 -126303071 - MIR SINE MIR -14 248 23 1362 203 50 10 chr11 22481402 22481702 -126301770 + AluJo SINE Alu 1 312 0 826 235 33 80 chr11 22481845 22482147 -126301325 + MER93b LTR ERV1 19 306 -67 453 231 0 22 chr11 22482147 22482329 -126301143 + (TA)n Simple_repeat Simple_repeat 2 179 0 239 154 0 0 chr11 22482329 22482381 -126301091 + MER57A LTR ERV1 347 398 -5 359 323 24 16 chr11 22482439 22482563 -126300909 - MIR SINE MIR -107 155 31 1226 153 201 13 chr11 22482640 22483134 -126300338 - LTR29 LTR ERV1 -2 608 1 313 295 32 21 chr11 22483561 22483656 -126299816 + MIR3 SINE MIR 96 191 -17 266 286 165 30 chr11 22484131 22484264 -126299208 + MIR SINE MIR 46 196 -66 450 296 86 36 chr11 22485392 22485612 -126297860 + MIR SINE MIR 14 244 -18 244 304 72 0 chr11 22485885 22485954 -126297518 + L2 LINE L2 3118 3191 -81 316 178 33 78 chr11 22485963 22486053 -126297419 - MER90 LTR ERV1 -487 88 3 250 43 0 65 chr11 22486061 22486107 -126297365 + (TTCC)n Simple_repeat Simple_repeat 2 44 0 424 333 70 16 chr11 22486147 22486333 -126297139 - MIR SINE MIR -21 241 46 248 348 17 8 chr11 22486909 22487027 -126296445 + L3 LINE CR1 591 709 -868 740 255 72 94 chr11 22488593 22489177 -126294295 - MLT1G LTR MaLR -4 586 16 243 175 0 0 chr11 22489646 22489703 -126293769 + GA-rich Low_complexity Low_complexity 2 58 0 3844 176 80 20 chr11 22490615 22490725 -126292747 - L1MA9 LINE L1 -33 6279 6177 351 44 0 0 chr11 22490725 22490770 -126292702 + (TG)n Simple_repeat Simple_repeat 1 45 0 3844 176 80 20 chr11 22490770 22491500 -126291972 - L1MA9 LINE L1 -135 6177 5389 3745 198 41 32 chr11 22491500 22491634 -126291838 + L1 LINE L1 4028 4159 -1987 189 0 0 0 chr11 22491634 22491655 -126291817 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 3745 198 41 32 chr11 22491655 22492405 -126291067 + L1 LINE L1 4159 4920 -1226 24 53 0 0 chr11 22494491 22494529 -126288943 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr11 22495105 22495133 -126288339 + AT_rich Low_complexity Low_complexity 1 28 0 511 281 8 8 chr11 22495162 22495283 -126288189 - LTR28 LTR ERV1 0 1020 900 530 259 22 52 chr11 22495363 22495595 -126287877 - LTR1 LTR ERV1 -560 225 1 292 164 16 0 chr11 22495597 22495658 -126287814 + L1ME LINE L1 5543 5604 -517 281 299 35 23 chr11 22495698 22495872 -126287600 + L1ME LINE L1 5691 5866 -255 209 355 0 0 chr11 22496124 22496186 -126287286 - L2 LINE L2 0 3272 3211 235 401 58 11 chr11 22496197 22496471 -126287001 - L2 LINE L2 -457 2857 2571 681 259 80 5 chr11 22496865 22497066 -126286406 - MIR SINE MIR 0 262 47 387 325 12 49 chr11 22497181 22497344 -126286128 + MIR3 SINE MIR 2 158 -50 305 206 68 0 chr11 22497497 22497570 -126285902 + MIR SINE MIR 112 189 -73 2251 99 0 7 chr11 22497647 22497949 -126285523 + AluSx SINE Alu 1 300 -12 400 264 22 143 chr11 22498680 22498762 -126284710 + MIR SINE MIR 17 107 -155 1896 146 141 26 chr11 22498762 22499146 -126284326 - MSTA LTR MaLR 0 428 1 400 264 22 143 chr11 22499146 22499336 -126284136 + MIR SINE MIR 107 256 -6 938 196 179 54 chr11 22499352 22499704 -126283768 + MSTD LTR MaLR 1 396 0 193 232 89 0 chr11 22501264 22501320 -126282152 + MIR SINE MIR 89 149 -113 213 329 53 0 chr11 22501337 22501413 -126282059 + MIR SINE MIR 88 167 -95 311 339 94 0 chr11 22502509 22502636 -126280836 + L2 LINE L2 3128 3266 -6 900 60 0 0 chr11 22503154 22503270 -126280202 + AluY SINE Alu 189 304 -7 212 263 158 32 chr11 22503761 22503856 -126279616 - MIR SINE MIR -150 112 6 299 250 9 69 chr11 22504473 22504589 -126278883 - L3 LINE CR1 -180 1397 1289 285 340 10 10 chr11 22504800 22504900 -126278572 - L2 LINE L2 0 3313 3214 798 309 88 26 chr11 22504901 22505286 -126278186 - MLT1I LTR MaLR 0 409 1 219 330 71 93 chr11 22505287 22505469 -126278003 - L2 LINE L2 -97 3175 2998 216 352 28 37 chr11 22505795 22505903 -126277569 - MIR SINE MIR -86 176 70 864 217 121 84 chr11 22509021 22509436 -126274036 - MSTB1 LTR MaLR -2 430 1 563 198 193 5 chr11 22509881 22510073 -126273399 + LTR37B LTR ERV1 198 425 -43 276 190 77 97 chr11 22510944 22511139 -126272333 + MER31-int LTR ERV1 1248 1438 -3498 275 289 109 23 chr11 22511452 22511580 -126271892 - MIR SINE MIR -65 197 59 227 286 92 73 chr11 22512508 22512702 -126270770 + MIR SINE MIR 11 206 -56 1437 153 77 71 chr11 22512994 22513320 -126270152 - MLT1B LTR MaLR -62 328 1 36505 38 1 0 chr11 22514655 22519908 -126263564 - L1PA3 LINE L1 0 6155 901 6730 65 3 10 chr11 22519904 22520795 -126262677 + L1PA3 LINE L1 24 908 -5238 * 460 264 209 7 chr11 22520920 22521068 -126262404 + MER5A DNA MER1_type 4 181 -8 192 143 191 0 chr11 22521770 22521812 -126261660 - L2 LINE L2 0 3313 3264 4259 156 11 18 chr11 22522148 22522862 -126260610 + MER50 LTR ERV1 1 709 -25 1138 300 123 17 chr11 22522931 22523545 -126259927 + L2 LINE L2 2383 3053 -219 566 267 137 58 chr11 22524115 22524407 -126259065 - L2 LINE L2 0 3313 2999 923 168 19 0 chr11 22524512 22524673 -126258799 + FRAM SINE Alu 5 168 -8 332 224 56 47 chr11 22525057 22525164 -126258308 - MIR SINE MIR -65 197 90 221 266 72 0 chr11 22526497 22526604 -126256868 - MIR SINE MIR -43 219 105 286 216 82 31 chr11 22526863 22526960 -126256512 + Tigger3(Golem) DNA MER2_type 5 106 -2923 * 1571 149 23 70 chr11 22526953 22527253 -126256219 + Tigger3(Golem) DNA MER2_type 2277 2555 -473 1853 136 0 0 chr11 22527253 22527518 -126255954 - AluSc SINE Alu -14 295 31 1571 149 23 70 chr11 22527518 22527614 -126255858 + Tigger3(Golem) DNA MER2_type 2555 2654 -374 839 169 22 0 chr11 22527616 22527752 -126255720 + Tigger3(Golem) DNA MER2_type 2889 3027 -2 967 265 16 4 chr11 22528063 22528316 -126255156 + MIR SINE MIR 6 261 -1 210 91 0 0 chr11 22528533 22528566 -126254906 + (GA)n Simple_repeat Simple_repeat 2 34 0 206 286 0 0 chr11 22529541 22529597 -126253875 - L2 LINE L2 -1 3312 3257 339 317 114 0 chr11 22530073 22530196 -126253276 + MIR SINE MIR 126 262 0 242 233 200 0 chr11 22530221 22530311 -126253161 - MIR SINE MIR -152 110 3 23 54 0 0 chr11 22530873 22530910 -126252562 + AT_rich Low_complexity Low_complexity 1 37 0 362 216 0 0 chr11 22531269 22531343 -126252129 - MLT1H LTR MaLR -401 148 75 296 229 12 0 chr11 22533369 22533452 -126250020 + (TATATG)n Simple_repeat Simple_repeat 3 86 0 274 217 0 22 chr11 22533522 22533614 -126249858 + (TA)n Simple_repeat Simple_repeat 2 91 0 703 203 94 9 chr11 22534147 22534359 -126249113 - Charlie1 DNA MER1_type -2 2759 2530 3798 158 5 0 chr11 22534381 22534996 -126248476 - L1PA12 LINE L1 -75 6093 5476 * 42396 33 23 1 chr11 22534991 22541009 -126242463 - L1PA2 LINE L1 -4 6151 1 853 107 7 0 chr11 22541010 22541150 -126242322 - L1PA12 LINE L1 -676 5485 5345 663 235 36 0 chr11 22541300 22541511 -126241961 - L1P LINE L1 -1178 5619 5400 1041 92 26 13 chr11 22541512 22541665 -126241807 - AluSg/x SINE Alu 0 309 155 1398 179 34 2 chr11 22541676 22542068 -126241404 - L1PA13 LINE L1 -4339 2458 2043 2413 268 24 16 chr11 22542640 22543075 -126240397 - L1M4c LINE L1 -4511 2133 1703 345 121 0 0 chr11 22543075 22543133 -126240339 - L1PA15 LINE L1 0 6165 6108 2413 268 24 16 chr11 22543133 22543634 -126239838 - L1M4c LINE L1 -4941 1703 1128 266 296 0 10 chr11 22543637 22543735 -126239737 - L1M4c LINE L1 -5498 1044 948 34537 113 16 9 chr11 22543758 22549870 -126233602 + L1PA7 LINE L1 11 6164 0 1866 287 18 40 chr11 22549874 22550062 -126233410 - L1M4c LINE L1 -5623 919 728 1939 141 50 0 chr11 22550062 22550359 -126233113 - AluSx SINE Alu 0 312 1 1866 287 18 40 chr11 22550359 22550791 -126232681 - L1M4c LINE L1 -5814 728 313 642 209 11 50 chr11 22551232 22551414 -126232058 - MER53 DNA DNA 0 189 15 185 304 41 94 chr11 22551703 22551874 -126231598 + L2 LINE L2 2922 3083 -189 4225 99 0 0 chr11 22552309 22552904 -126230568 - L1P LINE L1 -3634 2512 1918 2223 78 3 0 chr11 22552904 22553199 -126230273 + L1PA7 LINE L1 5859 6154 0 371 314 29 71 chr11 22553412 22553552 -126229920 + L2 LINE L2 3139 3272 0 1019 219 28 41 chr11 22554959 22555383 -126228089 - MLT1D LTR MaLR 0 505 1 339 342 155 37 chr11 22555731 22556132 -126227340 - L2 LINE L2 0 3272 2825 1917 144 18 15 chr11 22556296 22556629 -126226843 - MER1B DNA MER1_type -1 336 3 432 290 122 15 chr11 22556810 22557306 -126226166 - L1MEd LINE L1 -861 1629 988 285 252 136 0 chr11 22557338 22557441 -126226031 - MIR SINE MIR -25 237 121 21 36 0 0 chr11 22557609 22557637 -126225835 + AT_rich Low_complexity Low_complexity 1 28 0 439 263 35 0 chr11 22557742 22557856 -126225616 - MLT1I LTR MaLR 0 409 292 254 303 0 0 chr11 22557888 22557964 -126225508 - MLT1I LTR MaLR -277 132 57 1777 188 0 0 chr11 22557965 22558263 -126225209 + AluSx SINE Alu 1 298 -14 530 265 147 15 chr11 22559418 22559622 -126223850 + LTR16C LTR ERVL 256 486 -5 359 306 14 34 chr11 22559961 22560167 -126223305 - MLT1I LTR MaLR 0 409 170 718 204 34 6 chr11 22560181 22560357 -126223115 - MER53 DNA DNA -8 181 1 1850 156 22 62 chr11 22560363 22560766 -126222706 + MLT1B LTR MaLR 4 390 0 483 246 45 0 chr11 22560770 22560880 -126222592 - MLT1I LTR MaLR -235 174 60 538 294 68 35 chr11 22561029 22561413 -126222059 - L1MC/D LINE L1 -584 5658 5264 639 345 132 32 chr11 22561752 22562748 -126220724 - L1MC/D LINE L1 -1191 4955 3861 264 283 90 12 chr11 22562934 22563100 -126220372 - L1MC/D LINE L1 -2343 3803 3625 1764 171 3 3 chr11 22563103 22563408 -126220064 + AluJb SINE Alu 1 305 -7 25 51 0 0 chr11 22563590 22563629 -126219843 + AT_rich Low_complexity Low_complexity 1 39 0 796 281 58 8 chr11 22563694 22564195 -126219277 - L1MC/D LINE L1 -2881 3265 2740 283 376 35 12 chr11 22564444 22564614 -126218858 + LTR16A LTR ERVL 263 436 -14 419 319 138 30 chr11 22564616 22565021 -126218451 - L1MC/D LINE L1 -3429 2717 2269 283 231 50 41 chr11 22565736 22565857 -126217615 + HAL1b LINE L1 341 462 -886 24 0 0 0 chr11 22566564 22566588 -126216884 + AT_rich Low_complexity Low_complexity 1 24 0 1008 186 33 14 chr11 22566739 22566954 -126216518 + MER20 DNA MER1_type 1 219 0 348 149 15 0 chr11 22566983 22567050 -126216422 + L1MB2 LINE L1 6077 6144 -27 27 49 0 0 chr11 22567051 22567092 -126216380 + AT_rich Low_complexity Low_complexity 1 41 0 248 0 31 0 chr11 22568201 22568233 -126215239 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 21 0 0 0 chr11 22568500 22568521 -126214951 + AT_rich Low_complexity Low_complexity 1 21 0 12025 157 14 1 chr11 22569032 22569896 -126213576 - L1PA11 LINE L1 -1 6173 5322 312 27 0 0 chr11 22569896 22569933 -126213539 + (TG)n Simple_repeat Simple_repeat 2 38 0 12025 157 14 1 chr11 22569933 22571975 -126211497 - L1PA11 LINE L1 -852 5322 3233 11533 214 29 37 chr11 22572083 22575149 -126208323 - L1P3 LINE L1 -2715 3746 683 189 0 0 0 chr11 22575149 22575170 -126208302 + (CTGTG)n Simple_repeat Simple_repeat 1 21 0 11533 214 29 37 chr11 22575170 22575848 -126207624 - L1P3 LINE L1 -5778 683 1 21 71 0 0 chr11 22577209 22577251 -126206221 + AT_rich Low_complexity Low_complexity 1 42 0 1107 251 63 20 chr11 22577755 22578244 -126205228 - MER114 LTR ERV -138 510 1 1956 139 0 27 chr11 22578515 22578809 -126204663 - AluSx SINE Alu -25 287 2 87 73 0 0 chr11 22578900 22579078 -126204394 + AT_rich Low_complexity Low_complexity 1 178 0 222 62 0 0 chr11 22579094 22579126 -126204346 + (GA)n Simple_repeat Simple_repeat 2 33 0 289 220 0 0 chr11 22579139 22579189 -126204283 - MER94 DNA DNA -83 51 2 212 83 0 28 chr11 22579339 22579375 -126204097 + (GGGAGA)n Simple_repeat Simple_repeat 3 37 0 284 226 152 79 chr11 22579546 22579710 -126203762 - L1ME3 LINE L1 -56 6106 5931 1821 235 88 37 chr11 22579760 22579923 -126203549 - L1ME3 LINE L1 -149 6013 5851 555 277 75 56 chr11 22579923 22580639 -126202833 - L1MA4A LINE L1 -474 5829 5102 1303 153 13 18 chr11 22580640 22581093 -126202379 + LTR54 LTR ERV1 1 510 0 709 269 83 9 chr11 22581102 22581318 -126202154 - L1ME3 LINE L1 -1058 5088 4857 305 323 89 13 chr11 22581716 22581874 -126201598 + MIR3 SINE MIR 36 205 -3 279 296 105 26 chr11 22582509 22582661 -126200811 + L2 LINE L2 3148 3311 -2 41 36 0 0 chr11 22582684 22582739 -126200733 + AT_rich Low_complexity Low_complexity 1 55 0 366 361 30 20 chr11 22582781 22582983 -126200489 - MIR SINE MIR -10 252 49 1215 275 30 31 chr11 22583396 22584324 -126199148 + L1MA8 LINE L1 222 2343 -4694 1581 143 24 0 chr11 22584327 22584579 -126198893 + MLT2A2 LTR ERVL 3 260 -193 4857 200 28 2 chr11 22584579 22585536 -126197936 - MSTA-int LTR MaLR -669 982 1 320 77 5 0 chr11 22585536 22585583 -126197889 - MSTA LTR MaLR 0 428 378 1424 211 4 0 chr11 22585583 22585853 -126197619 + L1PA12 LINE L1 6 276 -7305 1968 156 119 8 chr11 22585957 22586342 -126197130 - MSTA LTR MaLR 0 428 1 4835 183 39 3 chr11 22586344 22587352 -126196120 + L1MA8 LINE L1 4777 5820 -1286 4739 170 30 5 chr11 22587360 22588315 -126195157 - L1PB4 LINE L1 -5 6151 5175 2719 169 49 1 chr11 22588313 22589081 -126194391 + L1MA8 LINE L1 5801 6605 -646 * 490 200 100 0 chr11 22589075 22589195 -126194277 + L1MA8 LINE L1 6957 7088 -163 * 360 148 0 0 chr11 22590671 22590732 -126192740 + (TG)n Simple_repeat Simple_repeat 2 62 0 183 80 0 0 chr11 22590863 22590888 -126192584 + (T)n Simple_repeat Simple_repeat 1 25 0 297 0 0 0 chr11 22592432 22592465 -126191007 + (TG)n Simple_repeat Simple_repeat 2 34 0 200 396 30 0 chr11 22592543 22592644 -126190828 - L2 LINE L2 -18 3295 3192 28 0 0 0 chr11 22592875 22592903 -126190569 + AT_rich Low_complexity Low_complexity 1 28 0 180 289 206 0 chr11 22592903 22593000 -126190472 + MIR SINE MIR 139 255 -7 420 265 32 26 chr11 22594004 22594193 -126189279 + L1M4 LINE L1 2183 2372 -3774 769 296 38 12 chr11 22595120 22595360 -126188112 + MIR SINE MIR 17 262 0 254 374 9 0 chr11 22595708 22595815 -126187657 + L2 LINE L2 2250 2357 -957 401 356 109 21 chr11 22595953 22596284 -126187188 + L2 LINE L2 2394 2753 -561 434 286 60 0 chr11 22596334 22596467 -126187005 + L2 LINE L2 2211 2351 -963 2553 297 74 34 chr11 22596473 22597255 -126186217 - L1MEc LINE L1 -4699 1518 791 1636 199 27 3 chr11 22597255 22597547 -126185925 - AluJo SINE Alu -13 299 1 2553 297 74 34 chr11 22597547 22598285 -126185187 - L1MEc LINE L1 -5426 791 84 962 105 0 19 chr11 22598315 22598526 -126184946 + (TA)n Simple_repeat Simple_repeat 1 206 0 550 293 37 18 chr11 22598660 22598847 -126184625 + MIR SINE MIR 64 254 -8 233 333 134 32 chr11 22598992 22599208 -126184264 + MIR SINE MIR 17 254 -8 180 0 0 0 chr11 22599792 22599812 -126183660 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 588 310 79 93 chr11 22600336 22600894 -126182578 + MLT1K LTR MaLR 34 583 -5 478 130 0 0 chr11 22601916 22601985 -126181487 + LTR54 LTR ERV1 1 69 -441 1237 128 20 0 chr11 22601990 22602194 -126181278 + LTR54 LTR ERV1 299 506 -4 2249 79 0 57 chr11 22602588 22602905 -126180567 + AluY SINE Alu 1 299 -12 585 325 38 13 chr11 22603146 22603383 -126180089 - MIR SINE MIR -11 251 9 343 378 16 0 chr11 22603487 22603614 -126179858 + L2 LINE L2 2942 3070 -243 282 271 332 4 chr11 22603812 22604052 -126179420 + L2 LINE L2 2716 3023 -290 1868 115 21 17 chr11 22604083 22604370 -126179102 + AluSc SINE Alu 1 288 -21 23 0 0 0 chr11 22604557 22604580 -126178892 + AT_rich Low_complexity Low_complexity 1 23 0 228 324 144 18 chr11 22604654 22604765 -126178707 - L2 LINE L2 -5 3267 3143 2471 147 2 67 chr11 22604802 22605278 -126178194 - MER65A LTR ERV1 0 445 1 1660 224 76 5 chr11 22605449 22605855 -126177617 - MER65A-int LTR ERV1 -200 4671 4237 1541 243 94 33 chr11 22605866 22606347 -126177125 - MER65A-int LTR ERV1 -756 4115 3606 3357 180 49 21 chr11 22706519 22707229 -126076243 + L1MB5 LINE L1 5411 6140 -34 2167 117 0 0 chr11 22707231 22707529 -126075943 + AluSx SINE Alu 1 298 -14 364 186 137 31 chr11 22707576 22707737 -126075735 + L1MB8 LINE L1 5824 6001 -177 660 9 37 28 chr11 22708097 22708204 -126075268 + (TAGA)n Simple_repeat Simple_repeat 4 111 0 1330 183 7 121 chr11 22708252 22708296 -126075176 + MER21-int LTR ERV1 464 511 -7026 1862 139 38 0 chr11 22708296 22708583 -126074889 - AluSg SINE Alu -12 298 1 1330 183 7 121 chr11 22708583 22708969 -126074503 + MER21-int LTR ERV1 511 845 -6692 669 235 19 12 chr11 22709073 22709235 -126074237 + MER21-int LTR ERV1 857 1019 -4104 271 146 219 24 chr11 22709374 22709456 -126074016 + MER67D LTR ERV1 128 225 -289 853 276 64 21 chr11 22709457 22709740 -126073732 + MER21-int LTR ERV1 1267 4467 -2291 1623 158 124 17 chr11 22709836 22710191 -126073281 - LTR54B LTR ERV1 -2 496 104 219 250 105 13 chr11 22710279 22710355 -126073117 + MIR3 SINE MIR 87 169 -39 395 96 0 0 chr11 22710534 22710586 -126072886 - MLT1B LTR MaLR 0 390 339 566 141 0 0 chr11 22710608 22710693 -126072779 - FLAM_C SINE Alu -24 119 35 1361 185 80 22 chr11 22710696 22711020 -126072452 - MLT1B LTR MaLR -47 343 1 21 95 0 0 chr11 22711245 22711308 -126072164 + AT_rich Low_complexity Low_complexity 1 63 0 197 333 86 12 chr11 22712381 22712462 -126071010 + L2 LINE L2 3195 3281 -32 362 202 53 32 chr11 22712467 22712561 -126070911 - MIR SINE MIR -130 132 37 1515 146 108 21 chr11 22712575 22712862 -126070610 - AluJb SINE Alu 0 312 1 28 0 0 0 chr11 22713014 22713042 -126070430 + AT_rich Low_complexity Low_complexity 1 28 0 1436 203 9 29 chr11 22713585 22713900 -126069572 - AluJb SINE Alu -3 309 1 641 202 0 16 chr11 22713999 22714165 -126069307 - FLAM_C SINE Alu 0 180 17 1864 95 19 8 chr11 22715443 22715705 -126067767 - AluSx SINE Alu -7 305 41 313 325 106 12 chr11 22715745 22715905 -126067567 + L1M4 LINE L1 4039 4213 -1933 275 206 40 119 chr11 22716464 22716590 -126066882 + MIR SINE MIR 134 249 -13 676 266 119 52 chr11 22716928 22717450 -126066022 - L2 LINE L2 -129 3184 1253 * 960 167 52 23 chr11 22717426 22717600 -126065872 + MER5A DNA MER1_type 11 189 0 390 268 86 5 chr11 22717600 22717778 -126065694 - L2 LINE L2 -2028 1286 996 2790 232 98 32 chr11 22717784 22718815 -126064657 + L1M4 LINE L1 2960 4058 -2088 310 323 111 16 chr11 22718839 22719028 -126064444 - L2 LINE L2 0 3313 3107 1227 131 0 0 chr11 22719073 22719248 -126064224 - AluSg/x SINE Alu -4 308 134 2495 61 3 0 chr11 22719248 22719542 -126063930 - AluSx SINE Alu -12 300 6 699 191 73 106 chr11 22719543 22719882 -126063590 + MLT1A1 LTR MaLR 65 396 0 191 274 20 0 chr11 22720480 22720531 -126062941 - MER5B DNA MER1_type 0 178 127 282 263 22 73 chr11 22720554 22720691 -126062781 - MER5B DNA MER1_type 0 178 49 2155 92 7 14 chr11 22720832 22721114 -126062358 - AluSg SINE Alu -28 282 3 1102 190 30 0 chr11 22721361 22721561 -126061911 - AluJb SINE Alu -106 206 1 892 216 103 66 chr11 22721798 22722117 -126061355 + L1ME3A LINE L1 5424 5754 -416 460 208 114 25 chr11 22722338 22722526 -126060946 + MLT1H1 LTR MaLR 341 545 -4 1518 207 42 30 chr11 22722529 22722935 -126060537 + L1ME3A LINE L1 5760 6170 0 972 151 29 76 chr11 22723385 22723535 -126059937 - L1MD2 LINE L1 -16 6343 6206 1946 158 15 55 chr11 22723535 22723939 -126059533 + MLT1B LTR MaLR 3 390 0 972 151 29 76 chr11 22723939 22724026 -126059446 - L1MD2 LINE L1 -153 6206 6117 695 158 151 0 chr11 22724974 22725113 -126058359 - L1MA5 LINE L1 0 6300 6141 545 264 0 0 chr11 22725527 22725648 -126057824 - FLAM_A SINE Alu -14 128 8 585 64 43 0 chr11 22726040 22726134 -126057338 + (GAAA)n Simple_repeat Simple_repeat 2 99 0 221 436 17 12 chr11 22726581 22726753 -126056719 - MIR3 SINE MIR -12 196 24 337 266 292 0 chr11 22726761 22726874 -126056598 + MER5A DNA MER1_type 4 149 -40 241 319 118 0 chr11 22726914 22727033 -126056439 + MIR SINE MIR 74 206 -56 29 60 0 0 chr11 22728998 22729048 -126054424 + AT_rich Low_complexity Low_complexity 1 50 0 251 330 0 21 chr11 22729216 22729310 -126054162 + CT-rich Low_complexity Low_complexity 1 92 0 360 0 0 0 chr11 22730768 22730808 -126052664 + (TG)n Simple_repeat Simple_repeat 2 41 0 552 68 49 0 chr11 22731017 22731130 -126052342 + (TA)n Simple_repeat Simple_repeat 1 118 0 200 256 122 0 chr11 22733889 22733971 -126049501 + MIR SINE MIR 109 200 -62 419 38 0 0 chr11 22736592 22736645 -126046827 - L1M1 LINE L1 -507 5795 5743 22 0 0 0 chr11 22737125 22737147 -126046325 + AT_rich Low_complexity Low_complexity 1 22 0 1247 111 6 0 chr11 22737238 22737410 -126046062 - AluSc SINE Alu -14 295 123 24 32 0 0 chr11 22737747 22737778 -126045694 + AT_rich Low_complexity Low_complexity 1 31 0 231 88 35 18 chr11 22738728 22738785 -126044687 + (TA)n Simple_repeat Simple_repeat 2 59 0 442 301 116 9 chr11 22738915 22739131 -126044341 + L2 LINE L2 3057 3295 -18 473 333 81 5 chr11 22739189 22739387 -126044085 + MIR SINE MIR 29 241 -21 403 215 168 0 chr11 22739963 22740070 -126043402 - MIR3 SINE MIR -34 174 50 26 0 0 0 chr11 22740693 22740719 -126042753 + AT_rich Low_complexity Low_complexity 1 26 0 267 114 0 0 chr11 22740952 22740996 -126042476 + (CA)n Simple_repeat Simple_repeat 2 45 0 33 80 0 0 chr11 22742890 22742965 -126040507 + AT_rich Low_complexity Low_complexity 1 75 0 24 0 0 0 chr11 22742996 22743020 -126040452 + AT_rich Low_complexity Low_complexity 1 24 0 750 234 14 47 chr11 22743162 22743376 -126040096 - L1PB4 LINE L1 0 6156 5950 245 281 116 16 chr11 22743377 22743498 -126039974 - MIR SINE MIR -98 164 32 21 57 0 0 chr11 22743935 22743970 -126039502 + AT_rich Low_complexity Low_complexity 1 35 0 438 293 83 33 chr11 22745052 22745233 -126038239 - MIR SINE MIR 0 262 73 279 0 0 0 chr11 22745269 22745300 -126038172 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 201 204 57 102 chr11 22745350 22745438 -126038034 - MIR SINE MIR -126 136 53 590 244 99 0 chr11 22745813 22745985 -126037487 + MER5A DNA MER1_type 1 189 0 2369 99 0 0 chr11 22746001 22746305 -126037167 - AluSq SINE Alu -8 305 2 262 336 53 15 chr11 22746643 22746774 -126036698 + MIR SINE MIR 57 192 -70 197 340 10 62 chr11 22746859 22746956 -126036516 - MIR SINE MIR -26 236 145 767 233 157 0 chr11 22746965 22747175 -126036297 - MIR SINE MIR -8 254 12 233 345 35 23 chr11 22747189 22747276 -126036196 - MIR SINE MIR -67 141 54 516 267 130 6 chr11 22747950 22748111 -126035361 + MIR SINE MIR 20 200 -62 1723 169 0 4 chr11 22748477 22748750 -126034722 + AluSx SINE Alu 3 274 -38 246 250 16 147 chr11 22749072 22749256 -126034216 + MIR SINE MIR 90 249 -13 986 223 5 15 chr11 22749315 22749517 -126033955 + MER20 DNA MER1_type 16 215 -4 1834 131 3 28 chr11 22750237 22750556 -126032916 - AluSg SINE Alu 0 312 1 347 260 83 62 chr11 22750890 22751082 -126032390 - L2 LINE L2 0 3313 3118 2590 95 11 5 chr11 22752056 22752424 -126031048 + L1PA10 LINE L1 5799 6168 0 339 270 90 28 chr11 22752970 22753181 -126030291 - L1M4 LINE L1 -2583 3563 3340 24 32 0 0 chr11 22753298 22753329 -126030143 + AT_rich Low_complexity Low_complexity 1 31 0 29 28 0 0 chr11 22753425 22753461 -126030011 + AT_rich Low_complexity Low_complexity 1 36 0 193 263 141 30 chr11 22756083 22756182 -126027290 + MIR SINE MIR 120 229 -33 391 317 115 0 chr11 22756237 22756420 -126027052 - MIR SINE MIR -12 250 47 246 300 154 9 chr11 22757084 22757194 -126026278 + L2 LINE L2 3188 3313 0 1261 151 168 7 chr11 22757988 22758279 -126025193 - MER44D DNA MER2_type 0 609 2 26 64 0 0 chr11 22758370 22758417 -126025055 + AT_rich Low_complexity Low_complexity 1 47 0 2268 92 7 7 chr11 22758646 22758950 -126024522 + AluSx SINE Alu 1 304 -8 327 244 85 80 chr11 22759881 22760282 -126023190 - L1MC5 LINE L1 -52 7909 7507 252 289 91 0 chr11 22760293 22760414 -126023058 - L1ME3A LINE L1 -12 6158 6027 302 306 71 20 chr11 22762287 22762385 -126021087 - L2 LINE L2 -32 3240 3138 244 363 177 0 chr11 22762600 22762713 -126020759 - L2 LINE L2 0 3272 3140 204 343 27 0 chr11 22763084 22763157 -126020315 - L2 LINE L2 0 3272 3198 271 289 24 84 chr11 22763791 22763957 -126019515 + MIR SINE MIR 4 159 -103 219 139 0 0 chr11 22764291 22764327 -126019145 + (TA)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr11 22765619 22765640 -126017832 + AT_rich Low_complexity Low_complexity 1 21 0 1007 94 0 0 chr11 22767013 22767140 -126016332 + AluSg SINE Alu 1 127 -183 2441 246 33 22 chr11 22767387 22768406 -126015066 + L1M4 LINE L1 3475 4600 -1546 776 121 0 26 chr11 22768469 22768585 -126014887 + AluJb SINE Alu 14 126 -186 453 76 0 0 chr11 22768599 22768665 -126014807 + (GA)n Simple_repeat Simple_repeat 2 67 0 839 170 0 0 chr11 22768725 22768860 -126014612 + FLAM_C SINE Alu 6 140 -3 1010 244 44 4 chr11 22769250 22769479 -126013993 + MIR SINE MIR 6 243 -19 2068 100 4 4 chr11 22769804 22770112 -126013360 - AluSg SINE Alu 0 308 1 4558 168 35 7 chr11 22770728 22771539 -126011933 - Ricksha DNA DNA -1091 955 123 396 230 98 46 chr11 22771548 22771722 -126011750 - MLT1J LTR MaLR -328 183 1 660 146 49 24 chr11 22771764 22771887 -126011585 + FLAM_C SINE Alu 5 130 -3 269 36 54 36 chr11 22771896 22771952 -126011520 + (TAAAAA)n Simple_repeat Simple_repeat 4 60 0 209 243 126 78 chr11 22772101 22772204 -126011268 - MIR3 SINE MIR -87 121 14 191 36 36 0 chr11 22772411 22772439 -126011033 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 2011 127 16 19 chr11 22773687 22773995 -126009477 + AluSx SINE Alu 3 309 -3 234 0 0 0 chr11 22775390 22775416 -126008056 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2045 97 7 4 chr11 22775728 22776006 -126007466 - AluSp SINE Alu -5 308 30 261 243 43 0 chr11 22776414 22776484 -126006988 - MIR3 SINE MIR -16 192 120 391 358 68 27 chr11 22776513 22776661 -126006811 + L2 LINE L2 3104 3257 -15 195 42 0 0 chr11 22776666 22776690 -126006782 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 23 33 0 0 chr11 22777057 22777087 -126006385 + AT_rich Low_complexity Low_complexity 1 30 0 228 318 171 35 chr11 22777620 22778142 -126005330 - L2 LINE L2 -345 2969 2377 1632 145 42 19 chr11 22778155 22778417 -126005055 - AluJo SINE Alu -24 288 21 2048 105 28 3 chr11 22778638 22778924 -126004548 - AluSx SINE Alu -9 303 11 352 331 53 93 chr11 22779159 22779748 -126003724 - L2 LINE L2 -1098 2216 1605 368 297 216 0 chr11 22779748 22779896 -126003576 + MER5A DNA MER1_type 10 189 0 352 331 53 93 chr11 22779896 22780450 -126003022 - L2 LINE L2 -1709 1605 977 995 167 18 0 chr11 22780549 22780717 -126002755 - FAM SINE Alu -4 171 1 2031 132 3 0 chr11 22780800 22781087 -126002385 + AluSq SINE Alu 3 290 -23 28 0 0 0 chr11 22781087 22781115 -126002357 + AT_rich Low_complexity Low_complexity 1 28 0 637 206 30 0 chr11 22781348 22781479 -126001993 + FRAM SINE Alu 38 172 -4 326 243 44 29 chr11 22781923 22782059 -126001413 + L1M4c LINE L1 2322 2459 -3925 2264 103 0 0 chr11 22782110 22782412 -126001060 + AluJb SINE Alu 1 302 -10 2065 93 21 0 chr11 22783046 22783335 -126000137 - AluSx SINE Alu -17 295 1 21 57 0 0 chr11 22784067 22784102 -125999370 + AT_rich Low_complexity Low_complexity 1 35 0 1767 124 55 68 chr11 22784329 22784400 -125999072 - THE1C LTR MaLR 0 375 305 2137 77 6 49 chr11 22784400 22784725 -125998747 + AluY SINE Alu 1 311 0 1767 124 55 68 chr11 22784725 22785033 -125998439 - THE1C LTR MaLR -70 305 1 755 235 18 12 chr11 22785100 22785266 -125998206 + MIR SINE MIR 1 167 -95 252 265 88 52 chr11 22785412 22785651 -125997821 - L1MC/D LINE L1 -795 5351 5279 2235 111 3 3 chr11 22785651 22785958 -125997514 - AluSq SINE Alu -6 307 1 252 265 88 52 chr11 22785958 22786069 -125997403 - L1MC/D LINE L1 -867 5279 5173 5198 140 34 12 chr11 22786085 22786990 -125996482 - L1MA8 LINE L1 -3 6288 5364 338 213 0 0 chr11 22787485 22787546 -125995926 - MER58 DNA MER1_type -6 2414 2354 274 209 143 11 chr11 22787625 22787716 -125995756 + L1M4 LINE L1 4779 4881 -1265 821 152 28 7 chr11 22787755 22787900 -125995572 + FRAM SINE Alu 6 153 -23 610 159 138 0 chr11 22788619 22788808 -125994664 + AluJo SINE Alu 4 218 -94 743 184 77 0 chr11 22789443 22789611 -125993861 - MER3 DNA MER1_type -28 181 1 641 120 0 0 chr11 22789669 22789769 -125993703 + L1MB3 LINE L1 6077 6176 -7 216 0 0 0 chr11 22790754 22790778 -125992694 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1318 139 0 5 chr11 22790784 22790971 -125992501 - AluJb SINE Alu -42 270 85 2098 89 11 3 chr11 22791952 22792234 -125991238 + AluSp SINE Alu 1 284 -29 282 167 42 14 chr11 22792258 22792330 -125991142 + HAL1 LINE L1 1566 1639 -868 277 296 50 22 chr11 22792496 22792675 -125990797 + L1M4 LINE L1 2669 2852 -3294 1705 171 3 18 chr11 22792709 22792995 -125990477 + AluJo SINE Alu 1 282 -30 225 0 0 0 chr11 22792999 22793024 -125990448 + (CAA)n Simple_repeat Simple_repeat 2 26 0 26 64 0 0 chr11 22793117 22793164 -125990308 + AT_rich Low_complexity Low_complexity 1 47 0 238 226 0 97 chr11 22793293 22793386 -125990086 - L2 LINE L2 -9 3263 3180 261 320 0 14 chr11 22794981 22795060 -125988412 + AluS SINE Alu 3 70 -232 25 0 0 0 chr11 22795887 22795912 -125987560 + AT_rich Low_complexity Low_complexity 1 25 0 28 29 0 0 chr11 22796417 22796452 -125987020 + AT_rich Low_complexity Low_complexity 1 35 0 486 312 78 55 chr11 22796563 22797050 -125986422 - L1M4 LINE L1 -913 5233 4736 248 221 13 0 chr11 22797778 22797855 -125985617 + (TA)n Simple_repeat Simple_repeat 2 79 0 2247 114 0 0 chr11 22797909 22798215 -125985257 + AluSx SINE Alu 3 308 -4 21 0 0 0 chr11 22798451 22798472 -125985000 + AT_rich Low_complexity Low_complexity 1 21 0 800 299 33 5 chr11 22798493 22798704 -125984768 + MIR SINE MIR 34 250 -12 315 225 0 42 chr11 22798824 22798895 -125984577 + MER5A DNA MER1_type 12 79 -110 1575 73 14 5 chr11 22799574 22799793 -125983679 + L1MA2 LINE L1 6084 6304 0 203 228 70 18 chr11 22800276 22800333 -125983139 + L2 LINE L2 3209 3268 -4 269 219 44 37 chr11 22800350 22800443 -125983029 + MER5A DNA MER1_type 87 189 0 636 254 11 38 chr11 22800471 22800656 -125982816 + LTR67 LTR ERVL 10 189 -368 648 304 76 19 chr11 22800663 22801032 -125982440 + L1ME LINE L1 5412 5801 -361 780 116 23 23 chr11 22801350 22801479 -125981993 + FRAM SINE Alu 29 157 -19 656 298 69 5 chr11 22801523 22801741 -125981731 + MIR SINE MIR 7 238 -24 29 0 0 0 chr11 22802537 22802566 -125980906 + AT_rich Low_complexity Low_complexity 1 29 0 2225 113 3 0 chr11 22802632 22802941 -125980531 - AluSp SINE Alu -3 310 1 186 71 0 0 chr11 22802990 22803018 -125980454 + (TTA)n Simple_repeat Simple_repeat 1 28 0 247 258 0 0 chr11 22803024 22803086 -125980386 - L1ME LINE L1 -469 5652 5591 360 359 6 18 chr11 22806974 22807141 -125976331 - MIR SINE MIR -8 254 90 215 378 40 0 chr11 22807334 22807482 -125975990 - MIR3 SINE MIR -1 207 54 869 207 6 0 chr11 22807780 22807944 -125975528 + FAM SINE Alu 2 166 -9 459 241 107 83 chr11 22808387 22808761 -125974711 - L1ME4a LINE L1 -72 6049 5667 220 241 184 35 chr11 22808933 22809020 -125974452 - L2 LINE L2 0 3272 3173 22 35 0 0 chr11 22810110 22810139 -125973333 + AT_rich Low_complexity Low_complexity 1 29 0 310 200 0 25 chr11 22810171 22810251 -125973221 - L1MC4 LINE L1 -1350 6692 6615 798 285 20 0 chr11 22810288 22810488 -125972984 - MIR SINE MIR -58 204 1 212 250 75 122 chr11 22810490 22810527 -125972945 + MIR SINE MIR 73 110 -152 2184 37 81 0 chr11 22810527 22810798 -125972674 + AluY SINE Alu 1 293 -18 212 250 75 122 chr11 22810798 22810948 -125972524 + MIR SINE MIR 110 251 -11 23 0 0 0 chr11 22811143 22811166 -125972306 + AT_rich Low_complexity Low_complexity 1 23 0 331 331 116 29 chr11 22811836 22812008 -125971464 + MIR3 SINE MIR 16 202 -6 2021 109 35 3 chr11 22812454 22812738 -125970734 - AluSg SINE Alu -17 293 1 311 258 56 11 chr11 22812739 22812828 -125970644 - MIR SINE MIR -66 142 50 400 369 41 73 chr11 22812906 22813275 -125970197 - L2 LINE L2 -11 3261 2905 375 311 129 8 chr11 22813420 22813552 -125969920 - L2 LINE L2 0 3272 3125 235 265 125 80 chr11 22813657 22813857 -125969615 + L2 LINE L2 3104 3312 -1 201 25 25 50 chr11 22814753 22814793 -125968679 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 278 349 64 0 chr11 22815155 22815264 -125968208 + MIR SINE MIR 77 192 -70 204 32 32 81 chr11 22815892 22815954 -125967518 + (TTA)n Simple_repeat Simple_repeat 2 60 0 1863 203 84 18 chr11 22816108 22816546 -125966926 - MLT1C LTR MaLR 0 467 1 353 387 7 0 chr11 22817576 22817713 -125965759 - MER91A DNA MER1_type -38 158 21 551 275 108 14 chr11 22817871 22818093 -125965379 - MER102a DNA MER1_type -3 327 85 827 85 0 0 chr11 22818093 22818199 -125965273 - AluY SINE Alu -7 304 199 207 100 20 40 chr11 22818572 22818622 -125964850 + (TATG)n Simple_repeat Simple_repeat 4 52 0 205 250 80 0 chr11 22818712 22818800 -125964672 - L2 LINE L2 -192 3121 3027 942 113 0 0 chr11 22818806 22818948 -125964524 + (TA)n Simple_repeat Simple_repeat 2 143 0 2105 122 3 0 chr11 22818955 22819241 -125964231 - AluSp SINE Alu -26 287 1 1881 193 47 34 chr11 22819242 22819784 -125963688 + MLT2A2 LTR ERVL 4 554 0 352 212 82 0 chr11 22819791 22819876 -125963596 - LTR16A1 LTR ERVL -2 455 364 1144 335 69 13 chr11 22819878 22820431 -125963041 - L2 LINE L2 -665 2649 2066 378 309 32 0 chr11 22821047 22821170 -125962302 - L2 LINE L2 -1303 2011 1885 253 61 0 0 chr11 22821509 22821542 -125961930 - U2 snRNA snRNA -155 33 1 307 405 8 0 chr11 22822441 22822572 -125960900 - MLT1K LTR MaLR -373 215 84 1034 309 51 24 chr11 22822967 22823378 -125960094 + MLT1J2 LTR MaLR 24 445 -5 22 35 0 0 chr11 22823425 22823454 -125960018 + AT_rich Low_complexity Low_complexity 1 29 0 323 318 128 9 chr11 22824062 22824427 -125959045 - MLT1J LTR MaLR -54 457 13 417 264 18 0 chr11 22825681 22825791 -125957681 + MIR SINE MIR 148 259 -3 998 279 38 62 chr11 22826582 22827030 -125956442 - LTR33 LTR ERVL -6 515 79 399 259 94 41 chr11 22827916 22828086 -125955386 - MLT1H LTR MaLR -370 179 1 350 349 79 0 chr11 22828192 22828344 -125955128 - L2 LINE L2 -498 2816 2653 767 286 39 52 chr11 22828445 22828851 -125954621 - L1ME3 LINE L1 -2 6160 5760 284 209 58 0 chr11 22828887 22828973 -125954499 - L1ME3 LINE L1 -852 5294 5204 777 288 76 17 chr11 22829003 22829169 -125954303 + L1M4 LINE L1 4481 4636 -1510 2436 69 3 0 chr11 22829169 22829472 -125954000 + AluY SINE Alu 1 304 -7 777 288 76 17 chr11 22829472 22829711 -125953761 + L1M4 LINE L1 4636 4910 -1236 29 60 0 0 chr11 22829827 22829877 -125953595 + AT_rich Low_complexity Low_complexity 1 50 0 943 213 85 8 chr11 22829919 22830039 -125953433 + L1MA9 LINE L1 6029 6138 -174 213 39 0 0 chr11 22830039 22830065 -125953407 + (CA)n Simple_repeat Simple_repeat 1 26 0 943 213 85 8 chr11 22830065 22830202 -125953270 + L1MA9 LINE L1 6138 6306 -6 217 330 19 39 chr11 22830216 22830319 -125953153 - L2 LINE L2 -850 2464 2364 437 287 39 33 chr11 22831325 22831506 -125951966 + L2 LINE L2 3132 3313 0 5759 114 4 6 chr11 22832136 22833368 -125950104 + L1PA10 LINE L1 4838 6066 -102 22 0 0 0 chr11 22833368 22833390 -125950082 + AT_rich Low_complexity Low_complexity 1 22 0 871 49 0 49 chr11 22833520 22833642 -125949830 + L1PA10 LINE L1 6053 6168 0 1681 192 50 18 chr11 22833711 22834092 -125949380 + LTR52 LTR ERVL 3 395 -26 203 133 0 0 chr11 22834111 22834141 -125949331 + (GA)n Simple_repeat Simple_repeat 2 31 0 189 0 0 0 chr11 22834965 22834986 -125948486 + (A)n Simple_repeat Simple_repeat 1 21 0 14259 184 30 24 chr11 22835720 22836541 -125946931 + L1MA8 LINE L1 3009 3823 -3887 1796 187 14 14 chr11 22836541 22836889 -125946583 + MER7A DNA MER2_type 1 346 0 14259 184 30 24 chr11 22836889 22838773 -125944699 + L1MA8 LINE L1 3823 5694 -2016 1600 189 20 23 chr11 22838773 22839075 -125944397 - AluJo SINE Alu -10 302 2 14259 184 30 24 chr11 22839075 22839712 -125943760 + L1MA8 LINE L1 5694 6325 -1385 2519 46 0 43 chr11 22839712 22840037 -125943435 + AluY SINE Alu 1 311 0 14259 184 30 24 chr11 22840037 22841327 -125942145 + L1MA8 LINE L1 6325 7707 -3 24 32 0 0 chr11 22841398 22841429 -125942043 + AT_rich Low_complexity Low_complexity 1 31 0 320 329 92 65 chr11 22841959 22842330 -125941142 - L2 LINE L2 0 3272 2892 * 510 266 85 11 chr11 22842298 22842481 -125940991 + MIR SINE MIR 16 212 -50 22 0 0 0 chr11 22842981 22843003 -125940469 + AT_rich Low_complexity Low_complexity 1 22 0 418 333 70 9 chr11 22843022 22843235 -125940237 - MIR SINE MIR -27 235 10 1308 202 29 40 chr11 22844120 22844397 -125939075 + AluJb SINE Alu 1 274 -38 189 0 0 0 chr11 22844398 22844419 -125939053 + (TC)n Simple_repeat Simple_repeat 1 21 0 346 239 0 23 chr11 22844424 22844512 -125938960 - L1MC4 LINE L1 -1339 6703 6618 2202 97 3 7 chr11 22844514 22844881 -125938591 - AluY SINE Alu 0 311 1 234 311 19 57 chr11 22845324 22845430 -125938042 + MIR SINE MIR 79 180 -82 495 276 49 12 chr11 22845432 22845595 -125937877 + MER69A DNA AcHobo 2 170 -7 510 61 0 0 chr11 22845632 22845698 -125937774 + (CA)n Simple_repeat Simple_repeat 2 67 0 185 0 40 0 chr11 22845702 22845727 -125937745 + (GA)n Simple_repeat Simple_repeat 2 27 0 633 186 0 0 chr11 22845729 22845831 -125937641 - MLT2C1 LTR ERVL -62 335 234 3259 192 54 70 chr11 22845838 22846315 -125937157 - L1MA9 LINE L1 -38 6274 5816 513 58 0 0 chr11 22846315 22846384 -125937088 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 3259 192 54 70 chr11 22846384 22846812 -125936660 - L1MA9 LINE L1 -496 5816 5383 2652 200 93 7 chr11 22846815 22847491 -125935981 + L1MA9 LINE L1 4653 5386 -760 1576 206 16 6 chr11 22847491 22847802 -125935670 - MLT2C2 LTR ERVL -150 314 1 35 0 0 0 chr11 22847969 22848004 -125935468 + AT_rich Low_complexity Low_complexity 1 35 0 187 296 19 0 chr11 22849173 22849227 -125934245 - MIR3 SINE MIR -24 184 130 338 219 134 0 chr11 22849557 22849639 -125933833 + MIR3 SINE MIR 108 200 -8 244 298 76 46 chr11 22851816 22851947 -125931525 - L2 LINE L2 0 3313 3179 227 167 37 74 chr11 22853084 22853138 -125930334 - LTR67 LTR ERVL -2 555 504 472 211 18 9 chr11 22853156 22853270 -125930202 - L1MB8 LINE L1 -9 6169 6055 378 265 31 0 chr11 22854145 22854243 -125929229 + L3 LINE CR1 1472 1572 -5 3572 68 12 1 chr11 22854731 22855442 -125928030 - L1PA7 LINE L1 -544 5610 4896 4180 65 2 0 chr11 22855444 22855979 -125927493 + L1PA7 LINE L1 5618 6153 -1 368 339 174 26 chr11 22856653 22856957 -125926515 - L2 LINE L2 -6 3266 2918 393 244 81 116 chr11 22857009 22857181 -125926291 + MIR SINE MIR 11 176 -86 372 276 65 28 chr11 22857965 22858179 -125925293 - L1ME4a LINE L1 -187 5934 5713 23 0 0 0 chr11 22858761 22858784 -125924688 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr11 22859468 22859488 -125923984 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 247 310 23 54 chr11 22860756 22860885 -125922587 - MIR3 SINE MIR -3 205 81 1097 214 136 9 chr11 22860971 22861317 -125922155 - Charlie1 DNA MER1_type -4 2757 2368 1459 178 94 12 chr11 22861417 22861737 -125921735 + MER63 DNA MER1_type 672 1017 -45 2612 93 11 0 chr11 22861741 22862116 -125921356 - L1PA10 LINE L1 -499 5632 5254 3750 76 18 0 chr11 22862116 22862615 -125920857 + L1PA10 LINE L1 5656 6164 -4 1915 85 0 35 chr11 22862619 22862970 -125920502 + AluY SINE Alu 35 376 0 1264 197 38 65 chr11 22863192 22863645 -125919827 - MLT1A1 LTR MaLR -3 362 1 206 280 0 0 chr11 22864029 22864079 -125919393 - L2 LINE L2 -2 3311 3262 394 285 23 46 chr11 22865043 22865173 -125918299 + MIR SINE MIR 15 141 -121 552 245 31 46 chr11 22865178 22865374 -125918098 - L2 LINE L2 -1 3312 3120 5709 193 98 22 chr11 22865376 22865671 -125917801 - Charlie1a DNA MER1_type -1310 1451 1180 1490 200 10 13 chr11 22865671 22865971 -125917501 + AluJb SINE Alu 11 309 -3 5709 193 98 22 chr11 22865971 22866759 -125916713 - Charlie1a DNA MER1_type -1581 1180 244 4254 58 0 0 chr11 22866759 22867289 -125916183 - L1PA7 LINE L1 0 6154 5625 5709 193 98 22 chr11 22867289 22867553 -125915919 - Charlie1a DNA MER1_type -2517 244 1 504 269 120 41 chr11 22867596 22867838 -125915634 - L2 LINE L2 -229 3084 2824 257 236 136 45 chr11 22867825 22867935 -125915537 + MIR SINE MIR 132 251 -11 * 338 321 77 84 chr11 22868489 22868776 -125914696 - L2 LINE L2 0 3272 2988 1563 183 24 154 chr11 22868778 22869369 -125914103 - MER67D LTR ERV1 0 514 1 363 386 6 12 chr11 22869477 22869640 -125913832 - MIR SINE MIR -88 174 13 797 234 19 31 chr11 22869964 22870220 -125913252 - L1ME2 LINE L1 -19 6145 5893 1754 190 25 0 chr11 22870232 22870558 -125912914 + MLT2C1 LTR ERVL 5 338 -59 1302 239 75 11 chr11 22870566 22870966 -125912506 - L1ME2 LINE L1 -418 5746 5321 2259 110 0 7 chr11 22872205 22872506 -125910966 - AluSc SINE Alu -10 299 1 325 320 112 39 chr11 22873090 22873432 -125910040 - L2 LINE L2 -221 3051 2685 676 296 64 20 chr11 22873474 22873724 -125909748 - MIR SINE MIR 0 262 2 720 263 31 31 chr11 22873730 22873985 -125909487 - MIR SINE MIR -3 259 5 238 333 63 42 chr11 22873985 22874174 -125909298 - L2 LINE L2 -665 2649 2457 1281 247 183 25 chr11 22874204 22874595 -125908877 - MLT1F1 LTR MaLR 0 567 88 2206 124 11 14 chr11 22874595 22874951 -125908521 - THE1A LTR MaLR 0 355 1 1281 247 183 25 chr11 22874951 22875053 -125908419 - MLT1F1 LTR MaLR -479 88 3 639 267 53 77 chr11 22876011 22876258 -125907214 + MIR SINE MIR 12 252 -10 234 62 0 0 chr11 22876263 22876295 -125907177 + (CAT)n Simple_repeat Simple_repeat 3 34 0 1285 257 80 21 chr11 22876526 22876962 -125906510 + MLT1C LTR MaLR 6 467 0 194 341 84 70 chr11 22877036 22877394 -125906078 + L2 LINE L2 2910 3272 0 24 77 0 0 chr11 22878461 22878513 -125904959 + AT_rich Low_complexity Low_complexity 1 52 0 2043 120 17 0 chr11 22879389 22879680 -125903792 + AluSq SINE Alu 1 296 -17 200 287 8 107 chr11 22879760 22879882 -125903590 + MIR3 SINE MIR 60 169 -39 246 202 124 45 chr11 22880060 22880139 -125903333 - MER103 DNA DNA -70 96 8 508 311 70 48 chr11 22880139 22880538 -125902934 - MLT1I LTR MaLR 0 409 2 219 280 147 0 chr11 22880575 22880650 -125902822 + L3 LINE CR1 1491 1576 -1 267 152 0 0 chr11 22881243 22881289 -125902183 + (TA)n Simple_repeat Simple_repeat 1 46 0 25 31 0 0 chr11 22882376 22882408 -125901064 + AT_rich Low_complexity Low_complexity 1 32 0 290 355 48 24 chr11 22882488 22882654 -125900818 - MIR3 SINE MIR -21 187 18 206 156 0 22 chr11 22883066 22883111 -125900361 + (TTCA)n Simple_repeat Simple_repeat 3 46 0 194 173 0 39 chr11 22883115 22883167 -125900305 + CT-rich Low_complexity Low_complexity 2 51 0 3103 169 41 66 chr11 22883971 22884680 -125898792 + LTR8 LTR ERV1 1 691 0 234 306 24 0 chr11 22884680 22884765 -125898707 + LTR16A LTR ERVL 28 114 -336 1313 211 27 77 chr11 22884936 22885301 -125898171 - MLT1A1 LTR MaLR -18 347 1 254 284 0 35 chr11 22885309 22885425 -125898047 + CT-rich Low_complexity Low_complexity 1 112 0 362 356 85 11 chr11 22886078 22886266 -125897206 + MIR SINE MIR 31 232 -30 1772 234 102 14 chr11 22886273 22886785 -125896687 + MLT1F1 LTR MaLR 1 557 -10 239 345 28 35 chr11 22887168 22887310 -125896162 - MIR SINE MIR -113 149 9 630 317 44 0 chr11 22888543 22888770 -125894702 + MIR SINE MIR 15 251 -11 2105 298 57 18 chr11 22889156 22889928 -125893544 + L2 LINE L2 1934 2735 -579 250 50 25 25 chr11 22889930 22889970 -125893502 + L1P4 LINE L1 5638 5677 -484 437 280 124 97 chr11 22890007 22890216 -125893256 + L2 LINE L2 2741 2943 -370 435 19 0 0 chr11 22890216 22890268 -125893204 + (CA)n Simple_repeat Simple_repeat 2 53 0 437 280 124 97 chr11 22890268 22890616 -125892856 + L2 LINE L2 2943 3313 0 213 407 55 0 chr11 22890703 22890848 -125892624 - MIR3 SINE MIR -28 180 28 4260 134 21 0 chr11 22891016 22891678 -125891794 + L1PA14 LINE L1 5484 6159 -2 242 116 23 0 chr11 22892187 22892230 -125891242 + CT-rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr11 22892531 22892553 -125890919 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr11 22892572 22892597 -125890875 + AT_rich Low_complexity Low_complexity 1 25 0 273 254 0 42 chr11 22895231 22895302 -125888170 - MIR SINE MIR 0 262 195 466 272 97 53 chr11 22895303 22895509 -125887963 - MIR SINE MIR -25 237 23 200 333 50 10 chr11 22895501 22895600 -125887872 + L3 LINE CR1 1079 1181 -396 * 648 282 82 37 chr11 22895888 22896133 -125887339 + L3 LINE CR1 1225 1480 -97 25 0 0 0 chr11 22896424 22896449 -125887023 + AT_rich Low_complexity Low_complexity 1 25 0 524 264 0 8 chr11 22896468 22896597 -125886875 - L2 LINE L2 -1 3312 3185 254 304 87 0 chr11 22896671 22896763 -125886709 + L2 LINE L2 3171 3270 -2 551 288 214 57 chr11 22896954 22897048 -125886424 + L3 LINE CR1 1081 1159 -418 799 244 77 5 chr11 22897048 22897257 -125886215 - MER58A DNA MER1_type 0 224 1 551 288 214 57 chr11 22897257 22897299 -125886173 + L3 LINE CR1 1159 1193 -384 2168 127 135 5 chr11 22897299 22897677 -125885795 - MSTA LTR MaLR 0 428 2 551 288 214 57 chr11 22897677 22897959 -125885513 + L3 LINE CR1 1193 1566 -11 532 328 57 15 chr11 22899279 22899544 -125883928 + MER102a DNA MER1_type 45 320 -10 365 257 86 29 chr11 22899650 22899790 -125883682 - LTR33A LTR ERVL -363 160 13 229 313 30 0 chr11 22899896 22899963 -125883509 + MIR3 SINE MIR 126 194 -14 21 0 0 0 chr11 22900166 22900187 -125883285 + AT_rich Low_complexity Low_complexity 1 21 0 182 36 0 36 chr11 22900353 22900381 -125883091 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 27 49 0 0 chr11 22901168 22901209 -125882263 + AT_rich Low_complexity Low_complexity 1 41 0 180 0 0 0 chr11 22901808 22901828 -125881644 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 187 298 68 73 chr11 22902690 22902895 -125880577 - L2 LINE L2 -3 3310 3107 447 351 53 0 chr11 22903399 22903607 -125879865 + L2 LINE L2 2841 3059 -254 285 346 30 0 chr11 22903920 22904021 -125879451 - MLT1L LTR MaLR -344 271 168 207 204 0 0 chr11 22904207 22904251 -125879221 + (TA)n Simple_repeat Simple_repeat 1 44 0 207 0 0 0 chr11 22905154 22905177 -125878295 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 234 0 0 0 chr11 22905474 22905500 -125877972 + (T)n Simple_repeat Simple_repeat 1 26 0 194 323 140 11 chr11 22905812 22905905 -125877567 + MIR3 SINE MIR 68 172 -36 839 301 27 12 chr11 22906152 22906408 -125877064 - MIR SINE MIR 0 262 3 247 282 0 14 chr11 22907170 22907241 -125876231 + MLT1J LTR MaLR 3 72 -439 232 254 42 14 chr11 22907293 22907364 -125876108 + MLT1L LTR MaLR 207 279 -336 24 0 0 0 chr11 22907531 22907555 -125875917 + AT_rich Low_complexity Low_complexity 1 24 0 234 0 0 0 chr11 22907850 22907876 -125875596 + (GA)n Simple_repeat Simple_repeat 1 26 0 323 308 70 23 chr11 22908177 22908391 -125875081 + MLT1L LTR MaLR 374 597 -18 786 219 123 101 chr11 22908790 22909147 -125874325 + MSTD LTR MaLR 1 396 0 202 359 134 14 chr11 22909170 22909312 -125874160 - MIR SINE MIR -70 192 34 803 246 14 33 chr11 22909329 22909544 -125873928 - LTR40a LTR ERVL -306 213 3 21 0 0 0 chr11 22909713 22909734 -125873738 + AT_rich Low_complexity Low_complexity 1 21 0 1060 136 12 12 chr11 22909734 22909903 -125873569 + MSTB LTR MaLR 258 426 0 1172 176 88 0 chr11 22909970 22910186 -125873286 + MER46A DNA MER2_type 1 235 -1 820 153 107 0 chr11 22910560 22910710 -125872762 - MER46A DNA MER2_type -69 167 2 924 217 16 0 chr11 22911242 22911431 -125872041 + MLT2B1 LTR ERVL 9 200 -320 309 335 48 37 chr11 22911767 22911955 -125871517 - MIR SINE MIR -70 192 3 2821 7 0 0 chr11 22912133 22912438 -125871034 - AluYa5 SINE Alu -6 305 1 2381 91 3 0 chr11 22913401 22913699 -125869773 - AluSp SINE Alu -14 299 1 1849 229 35 37 chr11 22913699 22914244 -125869228 - L1ME1 LINE L1 -10 6156 5613 1424 211 31 25 chr11 22914280 22914602 -125868870 + MLT1B LTR MaLR 67 390 0 866 184 57 14 chr11 22914602 22914830 -125868642 - L1ME1 LINE L1 -555 5614 5367 715 281 36 0 chr11 22914840 22915036 -125868436 + MLT1B LTR MaLR 188 390 0 1110 216 37 143 chr11 22915692 22916099 -125867373 + MLT1A2 LTR MaLR 3 366 -8 3030 224 9 9 chr11 22916103 22916769 -125866703 + MLT1A2-int LTR MaLR 1 666 -1069 336 246 139 16 chr11 22917998 22918120 -125865352 + MIR SINE MIR 120 256 -6 181 0 0 65 chr11 22918644 22918675 -125864797 + (CAA)n Simple_repeat Simple_repeat 2 30 0 261 225 50 50 chr11 22919914 22919994 -125863478 + MIR SINE MIR 71 150 -112 229 256 0 41 chr11 22920078 22920199 -125863273 + T-rich Low_complexity Low_complexity 5 120 0 205 171 0 0 chr11 22920756 22920791 -125862681 - L2 LINE L2 -9 3263 3229 207 162 0 0 chr11 22920890 22920927 -125862545 + (TG)n Simple_repeat Simple_repeat 2 38 0 437 309 115 6 chr11 22920945 22921110 -125862362 + MIR3 SINE MIR 4 186 -22 21 71 0 0 chr11 22921192 22921234 -125862238 + AT_rich Low_complexity Low_complexity 1 42 0 2499 57 0 25 chr11 22921525 22921843 -125861629 - AluY SINE Alu -1 310 1 441 316 126 5 chr11 22922084 22922299 -125861173 - MIR SINE MIR -2 260 20 1154 158 6 0 chr11 22922493 22922670 -125860802 - AluJb SINE Alu -4 308 131 381 93 0 0 chr11 22922670 22922724 -125860748 + (TCCC)n Simple_repeat Simple_repeat 2 55 0 251 215 28 65 chr11 22922724 22922761 -125860711 + HERVS71 LTR ERV1 453 490 -8488 1567 182 3 25 chr11 22922761 22923079 -125860393 - AluJo SINE Alu 0 312 2 251 215 28 65 chr11 22923079 22923148 -125860324 + HERVS71 LTR ERV1 490 555 -8423 452 245 0 0 chr11 22923270 22923364 -125860108 - MIR SINE MIR -78 184 91 265 141 0 31 chr11 22923586 22923650 -125859822 + (TAA)n Simple_repeat Simple_repeat 1 62 0 487 213 41 25 chr11 22923715 22923837 -125859635 - MIR SINE MIR 0 262 139 318 26 0 0 chr11 22924009 22924048 -125859424 + (TG)n Simple_repeat Simple_repeat 2 40 0 408 314 85 58 chr11 22924063 22924286 -125859186 - L3 LINE CR1 -5 1572 1344 468 276 29 65 chr11 22924324 22924494 -125858978 + MIR SINE MIR 28 191 -71 2223 123 7 0 chr11 22925476 22925785 -125857687 + AluSq SINE Alu 1 311 -2 183 184 0 0 chr11 22926265 22926303 -125857169 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 196 370 50 25 chr11 22927274 22927393 -125856079 - L2 LINE L2 0 3272 3151 186 309 0 44 chr11 22928485 22928553 -125854919 - L2 LINE L2 -2 3270 3206 679 293 86 0 chr11 22928774 22929006 -125854466 - MIR SINE MIR -6 256 5 676 319 96 69 chr11 22928982 22929211 -125854261 + L2 LINE L2 2199 2420 -894 * 186 43 0 0 chr11 22929211 22929234 -125854238 + (CA)n Simple_repeat Simple_repeat 1 23 0 676 319 96 69 chr11 22929234 22929681 -125853791 + L2 LINE L2 2420 2893 -421 596 328 75 40 chr11 22929731 22930130 -125853342 + L2 LINE L2 2893 3305 -8 233 289 171 66 chr11 22930669 22930956 -125852516 - L3 LINE CR1 -279 1298 982 205 318 94 0 chr11 22931255 22931340 -125852132 + MIR SINE MIR 47 139 -69 282 125 0 0 chr11 22932502 22932550 -125850922 + (CA)n Simple_repeat Simple_repeat 2 49 0 374 174 82 0 chr11 22933310 22933408 -125850064 + L1M4 LINE L1 3875 3980 -2166 2400 44 0 0 chr11 22933432 22933728 -125849744 - L1PA4 LINE L1 -3 6152 5857 24 32 0 0 chr11 22933860 22933891 -125849581 + AT_rich Low_complexity Low_complexity 1 31 0 391 336 95 75 chr11 22934757 22935052 -125848420 - L2 LINE L2 0 3272 2972 690 229 6 13 chr11 22935238 22935395 -125848077 + MLT1C LTR MaLR 310 465 -2 1649 185 35 72 chr11 22935410 22935815 -125847657 + MLT1B LTR MaLR 1 390 0 342 306 75 0 chr11 22937300 22937434 -125846038 - MIR SINE MIR -10 252 109 423 328 27 16 chr11 22937808 22937994 -125845478 + MIR3 SINE MIR 21 208 0 209 176 0 0 chr11 22938162 22938196 -125845276 + (CA)n Simple_repeat Simple_repeat 1 34 0 1474 169 74 24 chr11 22938270 22938566 -125844906 - AluJo SINE Alu 0 312 2 326 189 25 25 chr11 22938990 22939112 -125844360 + T-rich Low_complexity Low_complexity 4 125 0 1379 104 14 5 chr11 22939115 22939335 -125844137 - L1MA9 LINE L1 0 6312 6091 472 226 35 17 chr11 22939922 22940037 -125843435 - L2 LINE L2 -1 3312 3196 21 36 0 0 chr11 22940491 22940519 -125842953 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 22940653 22940674 -125842798 + AT_rich Low_complexity Low_complexity 1 21 0 3026 239 89 43 chr11 22940948 22941836 -125841636 - L1ME1 LINE L1 -5 6161 5315 1762 116 11 4 chr11 22941836 22942104 -125841368 - L1PA10 LINE L1 -1 6167 5898 3026 239 89 43 chr11 22942104 22943162 -125840310 - L1ME1 LINE L1 -851 5315 4307 2192 57 0 93 chr11 22943162 22943495 -125839977 - AluY SINE Alu -9 302 1 3026 239 89 43 chr11 22943495 22943617 -125839855 - L1ME1 LINE L1 -1859 4307 4192 1340 200 54 41 chr11 22943617 22943912 -125839560 - AluSx SINE Alu -13 299 1 3026 239 89 43 chr11 22943912 22944035 -125839437 - L1ME1 LINE L1 -1974 4192 3859 418 269 119 43 chr11 22944040 22944534 -125838938 - L1ME4a LINE L1 -158 5963 5403 460 298 23 0 chr11 22944625 22944756 -125838716 - MIR SINE MIR 0 262 129 219 254 0 0 chr11 22945953 22946012 -125837460 + A-rich Low_complexity Low_complexity 2 60 0 1682 150 0 4 chr11 22947629 22947882 -125835590 - AluSx SINE Alu -60 252 1 246 32 0 0 chr11 22948760 22948791 -125834681 + (TG)n Simple_repeat Simple_repeat 2 32 0 419 276 18 80 chr11 22948797 22948960 -125834512 - MIR SINE MIR -71 191 39 353 324 29 7 chr11 22948973 22949112 -125834360 + MIR SINE MIR 71 212 -50 253 350 45 32 chr11 22949842 22949910 -125833562 + MIR SINE MIR 2 68 -194 2328 70 0 22 chr11 22949910 22950222 -125833250 + AluY SINE Alu 1 305 -6 253 350 45 32 chr11 22950222 22950373 -125833099 + MIR SINE MIR 68 224 -38 225 159 0 0 chr11 22951385 22951429 -125832043 + T-rich Low_complexity Low_complexity 1 44 0 1782 168 55 0 chr11 22951439 22951731 -125831741 - AluSx SINE Alu -4 308 1 245 282 26 26 chr11 22951758 22951836 -125831636 + MLT1K LTR MaLR 188 265 -323 236 356 87 0 chr11 22954278 22954393 -125829079 + MIR3 SINE MIR 43 167 -41 545 96 0 0 chr11 22954395 22954478 -125828994 - L1PA13 LINE L1 -7 6156 6074 2554 33 0 3 chr11 22954764 22955071 -125828401 + L1PA3 LINE L1 5845 6150 -5 2227 124 0 0 chr11 22955409 22955715 -125827757 + AluSg1 SINE Alu 1 306 -3 313 159 120 3 chr11 22956216 22956306 -125827166 - L1MD3 LINE L1 0 7808 7723 1596 234 50 46 chr11 22956353 22956854 -125826618 - MLT1D LTR MaLR -2 503 1 1146 206 14 18 chr11 22956854 22957130 -125826342 - L1MD3 LINE L1 -80 7915 7641 264 302 12 0 chr11 22958036 22958122 -125825350 - MLT1I LTR MaLR -256 153 67 405 309 64 21 chr11 22958136 22958324 -125825148 - L1ME LINE L1 -530 5591 5396 202 239 91 11 chr11 22958648 22958736 -125824736 + MIR SINE MIR 125 219 -43 22 70 0 0 chr11 22959145 22959188 -125824284 + AT_rich Low_complexity Low_complexity 1 43 0 577 366 18 4 chr11 22959285 22959512 -125823960 - MIR SINE MIR -13 249 20 26 0 0 0 chr11 22959698 22959724 -125823748 + AT_rich Low_complexity Low_complexity 1 26 0 234 0 0 0 chr11 22959744 22959770 -125823702 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 42514 35 22 1 chr11 22959770 22965778 -125817694 - L1PA3 LINE L1 -13 6142 4 216 0 0 0 chr11 22967387 22967411 -125816061 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 599 207 0 25 chr11 22967414 22967535 -125815937 - FLAM_A SINE Alu -15 118 1 329 255 35 20 chr11 22967607 22967841 -125815631 - L1ME3A LINE L1 -53 6117 5844 305 256 8 83 chr11 22967898 22968031 -125815441 - L1ME3A LINE L1 -331 5839 5717 888 271 139 15 chr11 22968245 22968584 -125814888 - L2 LINE L2 -559 2755 2375 237 312 57 43 chr11 22969250 22969391 -125814081 + L2 LINE L2 2909 3051 -221 389 230 147 23 chr11 22969799 22969963 -125813509 + MLT1H LTR MaLR 6 159 -291 309 257 0 0 chr11 22969963 22970033 -125813439 - MER96 DNA MER1_type? -3 172 103 346 359 24 53 chr11 22970497 22970703 -125812769 + L2 LINE L2 2912 3111 -202 319 307 64 14 chr11 22970796 22970936 -125812536 - MIR SINE MIR -42 220 74 374 291 77 46 chr11 22971224 22971420 -125812052 - L1ME3A LINE L1 -517 5604 5403 249 108 0 0 chr11 22974072 22974109 -125809363 + (A)n Simple_repeat Simple_repeat 1 37 0 1544 85 0 5 chr11 22974187 22974387 -125809085 + AluSq SINE Alu 1 199 -114 337 91 0 0 chr11 22974387 22974431 -125809041 + AluSq SINE Alu 247 290 -11 626 304 55 5 chr11 22975031 22975248 -125808224 - MIR SINE MIR 0 262 35 395 164 75 0 chr11 22977289 22977356 -125806116 - L2 LINE L2 -1 3312 3241 1455 185 26 86 chr11 22977393 22977777 -125805695 + MLT1A2 LTR MaLR 1 361 -13 220 313 37 86 chr11 22977889 22978157 -125805315 - L2 LINE L2 -207 3065 2811 267 316 235 0 chr11 22978161 22978408 -125805064 + L3 LINE CR1 1269 1573 -4 6192 160 13 16 chr11 22978608 22979676 -125803796 + Tigger1 DNA MER2_type 1 1065 -1353 1535 159 17 60 chr11 22979673 22979974 -125803498 + Tigger1 DNA MER2_type 2130 2417 -1 * 183 42 0 0 chr11 22980660 22980684 -125802788 + (CA)n Simple_repeat Simple_repeat 2 25 0 228 205 0 0 chr11 22981244 22981283 -125802189 - Charlie4 DNA MER1_type 0 1961 1923 1839 244 52 48 chr11 22981300 22981837 -125801635 - MLT1F LTR MaLR -3 539 1 554 358 123 34 chr11 22981981 22982509 -125800963 - L2 LINE L2 -344 2970 2396 420 266 101 18 chr11 22983573 22983742 -125799730 + MIR SINE MIR 6 188 -74 204 259 93 19 chr11 22985345 22985399 -125798073 + L2 LINE L2 3153 3210 -62 2194 87 0 62 chr11 22985952 22986273 -125797199 - AluY SINE Alu -10 301 1 21 0 0 0 chr11 22987152 22987173 -125796299 + AT_rich Low_complexity Low_complexity 1 21 0 537 292 8 8 chr11 22987248 22987378 -125796094 - L2 LINE L2 -2 3270 3141 220 333 0 0 chr11 22987640 22987709 -125795763 + MIR SINE MIR 168 236 -26 210 243 56 93 chr11 22987724 22987831 -125795641 - MIR SINE MIR -24 238 136 2482 135 10 0 chr11 22987841 22988233 -125795239 - L1PA16 LINE L1 -2 6164 5769 5375 198 13 5 chr11 22988234 22991615 -125791857 - L1PA15 LINE L1 -2 7601 4054 4180 280 57 52 chr11 22991617 22993674 -125789798 - L1PA15 LINE L1 -5508 2073 8 3102 157 24 2 chr11 22993682 22994341 -125789131 - L1P4 LINE L1 -384 5782 5102 727 213 11 17 chr11 22994345 22994519 -125788953 + L1P LINE L1 4825 4997 -1149 309 276 35 35 chr11 22994834 22994950 -125788522 + MIR SINE MIR 82 197 -65 457 293 56 84 chr11 22995308 22995439 -125788033 + MIR SINE MIR 18 140 -122 378 0 0 0 chr11 22995439 22995481 -125787991 + (TG)n Simple_repeat Simple_repeat 1 42 0 457 293 56 84 chr11 22995481 22995598 -125787874 + MIR SINE MIR 140 259 -3 830 93 0 0 chr11 22996922 22997030 -125786442 - AluY SINE Alu -203 108 1 363 309 72 7 chr11 22997063 22997202 -125786270 - HAL1 LINE L1 -770 1737 1590 555 204 78 28 chr11 22997212 22997420 -125786052 - MLT1H LTR MaLR -24 602 311 256 240 280 24 chr11 22997535 22997660 -125785812 - MLT1H LTR MaLR -392 157 1 248 345 23 0 chr11 22998662 22998749 -125784723 - MLT-int LTR MaLR -1209 526 438 1627 159 26 4 chr11 22999016 22999286 -125784186 + AluSx SINE Alu 22 297 -15 286 364 50 16 chr11 22999379 22999500 -125783972 + L2 LINE L2 3148 3272 0 282 279 211 0 chr11 22999939 23000043 -125783429 - MIR SINE MIR -89 173 48 189 0 0 0 chr11 23000071 23000092 -125783380 + (A)n Simple_repeat Simple_repeat 1 21 0 289 270 145 54 chr11 23001322 23001618 -125781854 - L2 LINE L2 0 3313 2991 1597 117 26 0 chr11 23001620 23001885 -125781587 + L1MA3 LINE L1 6033 6304 -1 278 250 21 42 chr11 23003470 23003566 -125779906 + LTR67 LTR ERVL 432 525 -32 21 36 0 0 chr11 23003703 23003731 -125779741 + AT_rich Low_complexity Low_complexity 1 28 0 508 296 164 0 chr11 23005266 23005425 -125778047 - MER5A DNA MER1_type -1 188 4 576 337 28 35 chr11 23005472 23005727 -125777745 + MIR SINE MIR 10 262 0 22 0 0 0 chr11 23007509 23007531 -125775941 + AT_rich Low_complexity Low_complexity 1 22 0 567 320 61 48 chr11 23007593 23008034 -125775438 + L1M4 LINE L1 4384 4830 -1316 1519 148 3 33 chr11 23008067 23008370 -125775102 + L1PA13 LINE L1 5870 6163 0 2665 163 38 4 chr11 23008466 23008968 -125774504 + L1MA8 LINE L1 5732 6249 -42 2127 184 35 11 chr11 23008969 23009399 -125774073 + MSTB LTR MaLR 1 425 -1 23 54 0 0 chr11 23009871 23009908 -125773564 + AT_rich Low_complexity Low_complexity 1 37 0 22 56 0 0 chr11 23011116 23011152 -125772320 + AT_rich Low_complexity Low_complexity 1 36 0 182 321 24 12 chr11 23013531 23013615 -125769857 + L2 LINE L2 3153 3237 -76 315 0 0 0 chr11 23014349 23014384 -125769088 + (TG)n Simple_repeat Simple_repeat 2 36 0 2060 172 40 27 chr11 23015606 23016151 -125767321 - MLT2A2 LTR ERVL 0 554 1 230 281 35 35 chr11 23017329 23017443 -125766029 - LTR67 LTR ERVL -5 552 439 219 139 0 0 chr11 23017767 23017803 -125765669 + (TTC)n Simple_repeat Simple_repeat 2 37 0 348 294 59 8 chr11 23017853 23017972 -125765500 - MIR SINE MIR -1 261 137 605 129 207 9 chr11 23018072 23018188 -125765284 + MLT1A1 LTR MaLR 1 139 -226 1151 189 120 21 chr11 23018269 23018560 -125764912 - MER31B LTR ERV1 -143 323 4 2145 129 0 0 chr11 23018859 23019170 -125764302 + AluSq SINE Alu 3 313 0 22 35 0 0 chr11 23019198 23019227 -125764245 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr11 23019733 23019756 -125763716 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr11 23020100 23020132 -125763340 + AT_rich Low_complexity Low_complexity 1 32 0 225 299 47 9 chr11 23020145 23020252 -125763220 - HAL1b LINE L1 -41 1307 1197 623 292 160 19 chr11 23020629 23020960 -125762512 - LTR33A LTR ERVL -153 370 25 247 253 142 31 chr11 23020991 23021153 -125762319 - HAL1b LINE L1 -381 967 788 306 0 0 0 chr11 23021190 23021224 -125762248 + (CA)n Simple_repeat Simple_repeat 2 35 0 2299 81 0 10 chr11 23021340 23021647 -125761825 + AluY SINE Alu 1 304 -7 356 230 71 0 chr11 23021684 23021797 -125761675 - HAL1b LINE L1 -772 576 456 652 264 78 74 chr11 23021820 23022372 -125761100 - HAL1b LINE L1 -701 647 94 457 115 23 11 chr11 23022661 23022748 -125760724 + CT-rich Low_complexity Low_complexity 2 89 0 2049 106 7 10 chr11 23022865 23023158 -125760314 + AluY SINE Alu 1 292 -19 530 306 70 15 chr11 23023247 23023485 -125759987 + MIR SINE MIR 2 252 -10 2251 121 11 11 chr11 23024746 23025101 -125758371 + THE1A LTR MaLR 1 355 0 225 280 53 13 chr11 23025426 23025501 -125757971 + MIR SINE MIR 128 205 -57 3085 189 77 31 chr11 23025929 23026711 -125756761 + L1MDa LINE L1 1108 1935 -4605 1999 85 3 59 chr11 23026711 23027064 -125756408 + AluSq SINE Alu 1 313 0 3085 189 77 31 chr11 23027064 23027152 -125756320 + L1MDa LINE L1 1935 2018 -4522 25 31 0 0 chr11 23027350 23027382 -125756090 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr11 23027975 23027998 -125755474 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr11 23028767 23028801 -125754671 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr11 23029188 23029211 -125754261 + AT_rich Low_complexity Low_complexity 1 23 0 303 388 81 37 chr11 23029597 23030098 -125753374 - L2 LINE L2 -25 3247 2716 2803 269 118 49 chr11 23030136 23030847 -125752625 - L2 LINE L2 -4 3309 2649 4946 144 20 47 chr11 23030847 23031784 -125751688 + L1MC1 LINE L1 5422 6333 0 2803 269 118 49 chr11 23031784 23032597 -125750875 - L2 LINE L2 -664 2649 1699 10464 42 1 0 chr11 23032597 23034646 -125748826 + L1PA4 LINE L1 4102 6152 -3 442 211 51 143 chr11 23034655 23034892 -125748580 - MER69 DNA AcHobo -295 2231 2017 2226 104 3 3 chr11 23035256 23035553 -125747919 - AluSx SINE Alu -15 297 1 1972 72 4 0 chr11 23036412 23036677 -125746795 - L1PA13 LINE L1 -4 6159 5894 314 230 324 7 chr11 23036714 23036853 -125746619 + ERVL LTR ERVL 1782 1964 -3800 313 354 68 41 chr11 23037232 23037673 -125745799 + ERVL LTR ERVL 2506 2958 -2806 305 321 26 0 chr11 23037683 23037830 -125745642 + ERVL LTR ERVL 3302 3490 -2234 493 122 31 31 chr11 23037836 23037934 -125745538 + MER4A LTR ERV1 1 98 -566 1746 137 3 77 chr11 23037934 23038307 -125745165 + MER4A LTR ERV1 261 664 0 27 73 0 0 chr11 23040300 23040355 -125743117 + AT_rich Low_complexity Low_complexity 1 55 0 2710 162 25 0 chr11 23041293 23041780 -125741692 - L1PA16 LINE L1 -4 6162 5664 25 31 0 0 chr11 23041966 23041998 -125741474 + AT_rich Low_complexity Low_complexity 1 32 0 682 78 0 0 chr11 23042150 23042240 -125741232 - 5S rRNA rRNA -31 90 1 217 234 0 0 chr11 23042385 23042432 -125741040 - MIR SINE MIR -109 153 107 234 295 115 13 chr11 23042997 23043075 -125740397 + MIR SINE MIR 21 106 -156 757 174 10 103 chr11 23043117 23043243 -125740229 + MER5B DNA MER1_type 2 105 -73 1407 226 3 10 chr11 23043243 23043548 -125739924 - AluJb SINE Alu -9 303 1 757 174 10 103 chr11 23043548 23043616 -125739856 + MER5B DNA MER1_type 105 178 0 27 0 0 0 chr11 23043700 23043727 -125739745 + AT_rich Low_complexity Low_complexity 1 27 0 1911 150 0 38 chr11 23043821 23044135 -125739337 - AluSx SINE Alu -10 302 1 22 0 0 0 chr11 23044138 23044160 -125739312 + AT_rich Low_complexity Low_complexity 1 22 0 665 171 8 16 chr11 23045406 23045529 -125737943 - FRAM SINE Alu -33 143 22 1457 157 4 24 chr11 23045699 23045954 -125737518 + AluJb SINE Alu 1 250 -62 28 29 0 0 chr11 23046889 23046924 -125736548 + AT_rich Low_complexity Low_complexity 1 35 0 1940 125 14 4 chr11 23047005 23047305 -125736167 + AluSx SINE Alu 1 303 0 275 131 115 16 chr11 23047677 23047738 -125735734 - Alu SINE Alu -2 300 234 1584 101 140 0 chr11 23047738 23047966 -125735506 - AluSc SINE Alu -49 260 1 22 0 0 0 chr11 23048585 23048607 -125734865 + AT_rich Low_complexity Low_complexity 1 22 0 26 82 0 0 chr11 23048680 23048741 -125734731 + AT_rich Low_complexity Low_complexity 1 61 0 303 298 48 12 chr11 23049635 23049719 -125733753 - L2 LINE L2 0 3272 3186 482 224 17 9 chr11 23049933 23050049 -125733423 + AluJ SINE Alu 1 117 -185 521 185 23 116 chr11 23050049 23050122 -125733350 + AluJb SINE Alu 92 141 -171 1890 152 41 22 chr11 23050122 23050490 -125732982 - THE1C LTR MaLR 0 375 1 521 185 23 116 chr11 23050490 23050589 -125732883 + AluJb SINE Alu 141 248 -64 11463 27 1 1 chr11 23050862 23052592 -125730880 - L1P1 LINE L1 -408 5747 4019 5529 42 0 0 chr11 23052590 23053275 -125730197 + L1P LINE L1 3197 3881 -2265 * 852 236 36 36 chr11 23053276 23053581 -125729891 + MER69 DNA AcHobo 2222 2526 0 580 247 48 32 chr11 23054146 23054332 -125729140 + MIR SINE MIR 72 260 -2 356 293 111 20 chr11 23054566 23054764 -125728708 + L2 LINE L2 3098 3313 0 2057 130 3 0 chr11 23056061 23056361 -125727111 + AluSx SINE Alu 1 301 -11 935 244 101 30 chr11 23058703 23059100 -125724372 - Charlie4a DNA MER1_type -8 500 76 324 0 0 0 chr11 23059101 23059137 -125724335 + (TA)n Simple_repeat Simple_repeat 2 37 0 246 231 39 26 chr11 23059467 23059545 -125723927 - MIR SINE MIR -1 261 183 916 340 1 13 chr11 23059547 23059923 -125723549 + L2 LINE L2 2699 3070 -243 606 360 109 37 chr11 23060397 23060846 -125722626 - L2 LINE L2 -244 3028 2516 6327 28 3 0 chr11 23060846 23061592 -125721880 - L1PA3 LINE L1 0 6155 5408 606 360 109 37 chr11 23061592 23061760 -125721712 - L2 LINE L2 -756 2516 2362 637 261 142 9 chr11 23062891 23063117 -125720355 - MIR SINE MIR -5 257 2 444 338 40 14 chr11 23063164 23063312 -125720160 - L2 LINE L2 -4 3268 3117 5042 33 0 5 chr11 23064085 23064687 -125718785 + L1PA3 LINE L1 5556 6154 -1 207 0 0 0 chr11 23064692 23064715 -125718757 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 240 149 0 0 chr11 23064984 23065031 -125718441 + (TG)n Simple_repeat Simple_repeat 2 48 0 24 32 0 0 chr11 23065138 23065169 -125718303 + AT_rich Low_complexity Low_complexity 1 31 0 16840 164 34 17 chr11 23065456 23067303 -125716169 + L1PBa LINE L1 1 1815 -5047 1773 157 43 3 chr11 23067303 23067603 -125715869 + AluSx SINE Alu 1 312 0 16840 164 34 17 chr11 23067603 23069692 -125713780 + L1PBa LINE L1 1815 4032 -2830 2175 118 3 3 chr11 23069692 23069996 -125713476 + AluSg SINE Alu 4 307 -3 16840 164 34 17 chr11 23069996 23070868 -125712604 + L1PBa LINE L1 4032 4888 -1974 1265 201 14 17 chr11 23070869 23071162 -125712310 + AluSx SINE Alu 4 295 -17 3138 27 5 0 chr11 23071402 23071819 -125711653 + L1PA4 LINE L1 5765 6183 0 560 301 64 23 chr11 23071838 23072057 -125711415 - L2 LINE L2 -1689 1625 1398 256 305 39 47 chr11 23072064 23072192 -125711280 - L2 LINE L2 -614 2700 2574 226 324 0 0 chr11 23072357 23072425 -125711047 - L2 LINE L2 -803 2511 2444 3894 109 3 33 chr11 23072507 23073142 -125710330 - L1MA1 LINE L1 0 7721 7106 4738 115 5 0 chr11 23073145 23073812 -125709660 - THE1B-int LTR MaLR -910 670 1 1617 135 65 117 chr11 23073812 23074196 -125709276 - THE1B LTR MaLR 0 364 1 2130 114 37 14 chr11 23074197 23074547 -125708925 - L1MA1 LINE L1 -658 7063 6706 1431 183 70 18 chr11 23074554 23074838 -125708634 - MER1B DNA MER1_type -40 299 1 19697 178 41 12 chr11 23074838 23078078 -125705394 - L1MA1 LINE L1 -857 6708 3563 183 42 0 0 chr11 23078078 23078102 -125705370 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 19697 178 41 12 chr11 23078102 23081373 -125702099 - L1MA1 LINE L1 -4002 3563 13 1138 286 70 40 chr11 23081383 23081799 -125701673 - L2 LINE L2 -954 2360 1923 1669 139 92 47 chr11 23081799 23081987 -125701485 + THE1C LTR MaLR 1 179 -196 327 49 0 0 chr11 23081987 23082028 -125701444 + (TC)n Simple_repeat Simple_repeat 1 41 0 1669 139 92 47 chr11 23082028 23082198 -125701274 + THE1C LTR MaLR 179 375 0 1138 286 70 40 chr11 23082198 23082308 -125701164 - L2 LINE L2 -1391 1923 1818 343 297 97 60 chr11 23082527 23082961 -125700511 + L1MEd LINE L1 787 1236 -5136 579 307 63 37 chr11 23083155 23083455 -125700017 - MLT1J LTR MaLR -196 315 8 515 321 108 44 chr11 23083464 23084044 -125699428 + L1MEd LINE L1 1290 1811 -4573 308 286 135 22 chr11 23084364 23084542 -125698930 + L1MEd LINE L1 2643 2840 -3542 303 311 97 10 chr11 23084679 23084782 -125698690 - L2 LINE L2 -1 3271 3160 280 269 151 8 chr11 23085635 23085754 -125697718 - MIR3 SINE MIR -31 177 42 2224 86 10 3 chr11 23085771 23086061 -125697411 + AluSg SINE Alu 1 292 -18 210 310 17 0 chr11 23088326 23088384 -125695088 - L2 LINE L2 -7 3265 3207 1088 97 0 0 chr11 23089009 23089154 -125694318 - AluSq/x SINE Alu -166 147 3 180 380 110 0 chr11 23089319 23089419 -125694053 - L2 LINE L2 0 3272 3162 1996 132 0 43 chr11 23089545 23089871 -125693601 + AluSx SINE Alu 1 312 0 26 30 0 0 chr11 23090590 23090623 -125692849 + AT_rich Low_complexity Low_complexity 1 33 0 4522 114 4 47 chr11 23090700 23091446 -125692026 - L1PB3 LINE L1 0 6154 5441 6976 210 29 47 chr11 23091447 23092113 -125691359 - L1P5 LINE L1 -579 5632 4956 2549 51 0 0 chr11 23092113 23092428 -125691044 - L1PA5 LINE L1 -4 6150 5836 6976 210 29 47 chr11 23092428 23094297 -125689175 - L1P5 LINE L1 -1255 4956 3295 5861 188 18 12 chr11 23094306 23096068 -125687404 - L1P5 LINE L1 -4254 1950 171 2223 148 3 24 chr11 23096068 23096440 -125687032 - THE1B LTR MaLR 0 364 1 5861 188 18 12 chr11 23096440 23096613 -125686859 - L1P5 LINE L1 -6033 171 1 3213 272 26 91 chr11 23096581 23098326 -125685146 - L1PBa LINE L1 -5227 1636 5 * 223 245 19 0 chr11 23098427 23098480 -125684992 + MIR SINE MIR 157 210 -52 284 259 54 36 chr11 23098546 23098658 -125684814 + MLT1L LTR MaLR 87 200 -415 261 203 60 8 chr11 23098888 23099021 -125684451 + (TA)n Simple_repeat Simple_repeat 1 140 0 * 282 180 52 35 chr11 23098933 23099105 -125684367 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 377 89 30 75 chr11 23099137 23099574 -125683898 + (TTATA)n Simple_repeat Simple_repeat 1 417 0 230 88 44 62 chr11 23099586 23099699 -125683773 + (TTATA)n Simple_repeat Simple_repeat 3 113 0 239 81 23 81 chr11 23099701 23099788 -125683684 + (TATAA)n Simple_repeat Simple_repeat 5 86 0 * 399 200 48 6 chr11 23099741 23099906 -125683566 + (TA)n Simple_repeat Simple_repeat 2 173 0 2148 131 0 0 chr11 23100423 23100721 -125682751 - AluSx SINE Alu -14 298 1 1238 222 136 11 chr11 23101218 23101570 -125681902 + MSTD LTR MaLR 1 396 0 21 36 0 0 chr11 23101768 23101796 -125681676 + AT_rich Low_complexity Low_complexity 1 28 0 422 279 43 53 chr11 23103044 23103252 -125680220 + LTR33 LTR ERVL 15 220 -301 328 172 0 0 chr11 23103279 23103337 -125680135 + L1MC4 LINE L1 6648 6705 -1337 323 281 22 0 chr11 23103313 23103402 -125680070 - L1MC4 LINE L1 -1339 6703 6613 * 225 119 0 0 chr11 23103402 23103444 -125680028 + (TA)n Simple_repeat Simple_repeat 1 42 0 1280 56 12 0 chr11 23103444 23103606 -125679866 - L1PA5 LINE L1 -9 6145 5982 470 263 40 13 chr11 23103672 23103824 -125679648 + LTR33 LTR ERVL 366 521 0 1678 174 23 10 chr11 23106706 23107005 -125676467 - AluSx SINE Alu -9 303 1 233 191 16 0 chr11 23107297 23107309 -125676163 + (TA)n Simple_repeat Simple_repeat 2 12 -53 2017 111 18 4 chr11 23107309 23107589 -125675883 + AluSc SINE Alu 1 284 -25 233 191 16 0 chr11 23107589 23107639 -125675833 + (TA)n Simple_repeat Simple_repeat 12 65 0 2293 85 3 0 chr11 23107911 23108205 -125675267 - AluSp SINE Alu 0 313 19 325 126 23 35 chr11 23108913 23109000 -125674472 + CT-rich Low_complexity Low_complexity 2 87 0 42421 36 22 2 chr11 23109007 23115022 -125668450 - L1PA3 LINE L1 -9 6146 4 1047 54 11 49 chr11 23115028 23115213 -125668259 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 188 278 56 0 chr11 23115458 23115512 -125667960 + MIR SINE MIR 175 231 -31 808 254 154 28 chr11 23115834 23116319 -125667153 + MLT1G LTR MaLR 1 590 0 294 143 0 0 chr11 23116442 23116491 -125666981 + (TCCC)n Simple_repeat Simple_repeat 4 52 0 1531 219 27 0 chr11 23116493 23116790 -125666682 - AluJo SINE Alu -1 311 7 189 294 229 0 chr11 23117425 23117534 -125665938 + L2 LINE L2 3173 3306 -7 1897 194 45 5 chr11 23119243 23119620 -125663852 - MER74C LTR ERVL 0 460 69 2263 108 3 10 chr11 23120123 23120429 -125663043 - AluSx SINE Alu -8 304 1 594 278 54 40 chr11 23120476 23120576 -125662896 + L2 LINE L2 2287 2384 -930 195 42 0 0 chr11 23120576 23120600 -125662872 + (CAAAA)n Simple_repeat Simple_repeat 5 28 0 594 278 54 40 chr11 23120600 23120722 -125662750 + L2 LINE L2 2384 2512 -802 1855 182 8 13 chr11 23120930 23121312 -125662160 + Ricksha DNA DNA 1 489 -1107 523 199 0 15 chr11 23121905 23122041 -125661431 + GA-rich Low_complexity Low_complexity 3 136 0 259 284 0 40 chr11 23122119 23122193 -125661279 + MIR SINE MIR 37 107 -155 180 277 185 0 chr11 23122205 23122270 -125661202 + L2 LINE L2 3147 3223 -49 579 300 48 40 chr11 23122493 23122743 -125660729 - MIR SINE MIR -4 258 7 249 83 0 0 chr11 23123413 23123449 -125660023 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 216 358 55 107 chr11 23123460 23123806 -125659666 - L2 LINE L2 -41 3231 2904 432 200 52 96 chr11 23123961 23124191 -125659281 - MER112 DNA MER1_type -40 220 1 316 286 48 12 chr11 23124528 23124612 -125658860 - L2 LINE L2 0 3272 3186 482 224 17 9 chr11 23124826 23124942 -125658530 + AluJ SINE Alu 1 117 -185 634 171 116 93 chr11 23124942 23125015 -125658457 + AluJb SINE Alu 92 162 -150 1893 158 41 19 chr11 23125015 23125382 -125658090 - THE1C LTR MaLR 0 375 1 634 171 116 93 chr11 23125382 23125524 -125657948 + AluJb SINE Alu 162 312 0 226 329 151 40 chr11 23133318 23133543 -125649929 - MIR SINE MIR -2 260 11 1015 76 0 15 chr11 23136327 23136459 -125647013 + AluSq/x SINE Alu 3 132 -181 340 285 12 1 chr11 23136824 23136920 -125646552 + MIR SINE MIR 17 113 -95 210 91 0 0 chr11 23136921 23136954 -125646518 + (T)n Simple_repeat Simple_repeat 1 33 0 186 310 23 35 chr11 23137819 23137906 -125645566 - MIR SINE MIR -90 172 87 187 271 51 17 chr11 23138564 23138623 -125644849 - MIR SINE MIR -110 152 92 1158 209 32 4 chr11 23139132 23139385 -125644087 + MIR SINE MIR 3 262 0 687 271 68 28 chr11 23139469 23139720 -125643752 + MIR SINE MIR 2 262 0 472 333 146 27 chr11 23139716 23140230 -125643242 - L2 LINE L2 -33 3280 2716 * 614 211 43 37 chr11 23140428 23140589 -125642883 + MIR3 SINE MIR 32 193 -15 22 0 0 0 chr11 23141068 23141090 -125642382 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr11 23141602 23141631 -125641841 + AT_rich Low_complexity Low_complexity 1 29 0 448 277 46 50 chr11 23143760 23144020 -125639452 + MIR SINE MIR 2 260 -2 25 83 0 0 chr11 23144765 23144825 -125638647 + AT_rich Low_complexity Low_complexity 1 60 0 22 0 0 0 chr11 23144898 23144920 -125638552 + AT_rich Low_complexity Low_complexity 1 22 0 1141 124 21 11 chr11 23145541 23145727 -125637745 + AluSc SINE Alu 1 188 -121 301 67 0 0 chr11 23146029 23146074 -125637398 + Alu SINE Alu 257 301 0 9020 180 26 17 chr11 23146093 23146957 -125636515 + L1PA16 LINE L1 3289 4144 -2022 1679 180 3 13 chr11 23146957 23147268 -125636204 + AluSx SINE Alu 4 311 -1 9020 180 26 17 chr11 23147268 23149245 -125634227 + L1PA16 LINE L1 4144 6134 -32 180 0 0 0 chr11 23149256 23149276 -125634196 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1550 179 45 22 chr11 23149639 23149997 -125633475 - L1MA7 LINE L1 -9 6282 5917 2585 146 86 7 chr11 23149997 23150544 -125632928 - L1MC1 LINE L1 -8 6325 5652 194 222 9 111 chr11 23151641 23151749 -125631723 + MIR SINE MIR 113 209 -53 199 359 0 26 chr11 23151819 23151897 -125631575 - L2 LINE L2 -9 3263 3188 770 178 156 22 chr11 23152172 23152352 -125631120 - MER3 DNA MER1_type -1 208 5 259 311 52 57 chr11 23152519 23152712 -125630760 - MIR SINE MIR -43 219 28 432 294 91 7 chr11 23154823 23155099 -125628373 - L1MC4a LINE L1 -1928 5880 5582 1515 206 21 4 chr11 23156036 23156317 -125627155 - AluJb SINE Alu -25 287 2 36 70 0 0 chr11 23159122 23159193 -125624279 + AT_rich Low_complexity Low_complexity 1 71 0 21 0 0 0 chr11 23159465 23159486 -125623986 + AT_rich Low_complexity Low_complexity 1 21 0 412 352 39 6 chr11 23160399 23160578 -125622894 + L1ME LINE L1 5486 5670 -451 2360 78 3 0 chr11 23162198 23162505 -125620967 + AluY SINE Alu 1 308 -3 32 26 0 0 chr11 23162853 23162892 -125620580 + AT_rich Low_complexity Low_complexity 1 39 0 229 398 0 9 chr11 23164606 23164714 -125618758 - MIR SINE MIR -134 128 22 414 57 0 0 chr11 23165376 23165429 -125618043 + (CAT)n Simple_repeat Simple_repeat 2 54 0 461 274 170 0 chr11 23165544 23165697 -125617775 - MER5A DNA MER1_type 0 189 11 23 0 0 0 chr11 23165922 23165945 -125617527 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr11 23167188 23167223 -125616249 + AT_rich Low_complexity Low_complexity 1 35 0 406 297 117 36 chr11 23167226 23167448 -125616024 - MIR SINE MIR -15 247 8 186 43 0 0 chr11 23167827 23167850 -125615622 + (T)n Simple_repeat Simple_repeat 1 23 0 231 338 15 0 chr11 23172666 23172734 -125610738 - MIR SINE MIR -108 100 32 216 300 75 25 chr11 23172987 23173107 -125610365 - MIR SINE MIR -27 235 110 186 269 77 13 chr11 23173208 23173286 -125610186 - MIR SINE MIR -84 178 96 7408 211 113 19 chr11 23173307 23175467 -125608005 + L1PA16 LINE L1 3071 5440 -726 1417 179 10 51 chr11 23175467 23175786 -125607686 + AluJb SINE Alu 1 307 0 4095 124 29 3 chr11 23175791 23176442 -125607030 + L1PA16 LINE L1 5490 6157 -9 24 0 0 0 chr11 23176442 23176466 -125607006 + AT_rich Low_complexity Low_complexity 1 24 0 287 295 187 22 chr11 23177772 23177911 -125605561 + MIR3 SINE MIR 38 199 -9 22 0 0 0 chr11 23179592 23179614 -125603858 + AT_rich Low_complexity Low_complexity 1 22 0 203 313 83 62 chr11 23180423 23180615 -125602857 + L2 LINE L2 1817 2012 -1302 309 250 73 98 chr11 23181696 23181860 -125601612 - MER103 DNA DNA -4 162 3 230 260 0 21 chr11 23182220 23182316 -125601156 + GA-rich Low_complexity Low_complexity 2 95 0 191 35 0 35 chr11 23185876 23185905 -125597567 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 2438 91 3 0 chr11 23188212 23188520 -125594952 + AluSp SINE Alu 2 310 -3 1486 133 26 89 chr11 23189597 23189867 -125593605 - AluSx SINE Alu -53 259 7 1003 184 27 11 chr11 23189881 23190066 -125593406 + MER5A DNA MER1_type 1 188 -1 569 314 63 10 chr11 23191279 23191486 -125591986 - MIR SINE MIR -43 219 2 356 221 39 10 chr11 23191490 23191594 -125591878 + MER103 DNA DNA 58 164 -2 241 333 61 50 chr11 23191889 23192069 -125591403 - MIR SINE MIR -32 230 49 330 26 0 0 chr11 23193203 23193242 -125590230 + (CA)n Simple_repeat Simple_repeat 1 39 0 28 29 0 0 chr11 23193749 23193784 -125589688 + AT_rich Low_complexity Low_complexity 1 35 0 2237 76 0 7 chr11 23193863 23194151 -125589321 + AluY SINE Alu 4 289 -22 226 128 0 0 chr11 23194211 23194250 -125589222 - MADE1 DNA Mariner -37 43 5 191 167 24 0 chr11 23194757 23194799 -125588673 + (TATATG)n Simple_repeat Simple_repeat 2 44 0 4013 221 19 5 chr11 23195119 23196079 -125587393 + L1 LINE L1 2321 3293 -2853 2341 85 7 0 chr11 23196093 23196387 -125587085 + AluY SINE Alu 4 299 -12 2109 156 48 16 chr11 23196392 23196771 -125586701 - MSTB LTR MaLR -35 391 1 231 143 0 48 chr11 23196875 23196917 -125586555 + Charlie8 DNA MER1_type 309 348 -2069 312 294 78 10 chr11 23196919 23197021 -125586451 - MIR SINE MIR -148 114 6 200 348 7 58 chr11 23197725 23197863 -125585609 - MIR SINE MIR -61 201 71 26 64 0 0 chr11 23197870 23197917 -125585555 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr11 23200165 23200186 -125583286 + AT_rich Low_complexity Low_complexity 1 21 0 333 80 0 0 chr11 23200489 23200539 -125582933 - MADE1 DNA Mariner 0 80 31 2385 125 3 5 chr11 23200541 23200917 -125582555 + L1PA10 LINE L1 5793 6167 -1 24 32 0 0 chr11 23202194 23202225 -125581247 + AT_rich Low_complexity Low_complexity 1 31 0 1745 53 0 0 chr11 23203981 23204190 -125579282 - AluY SINE Alu -8 303 95 2350 91 0 0 chr11 23204588 23204885 -125578587 - AluSq SINE Alu -16 297 1 294 309 13 81 chr11 23205396 23205545 -125577927 - L2 LINE L2 -217 3055 2917 360 298 114 30 chr11 23205592 23205854 -125577618 - L2 LINE L2 -387 2927 2644 244 250 100 0 chr11 23206710 23206770 -125576702 - L2 LINE L2 -25 3288 3223 668 213 161 29 chr11 23206821 23206995 -125576477 - MER58A DNA MER1_type -27 197 1 256 313 0 0 chr11 23208020 23208084 -125575388 - L2 LINE L2 -4 3309 3246 242 327 114 53 chr11 23208248 23208661 -125574811 - L2 LINE L2 -417 2897 2460 310 298 123 9 chr11 23208750 23208864 -125574608 + MIR SINE MIR 48 174 -88 535 301 145 44 chr11 23208866 23209232 -125574240 - L2 LINE L2 -18 3295 2893 214 191 0 0 chr11 23209630 23209672 -125573800 + T-rich Low_complexity Low_complexity 1 42 0 2290 107 0 3 chr11 23210007 23210315 -125573157 + AluSq SINE Alu 1 307 -6 192 281 0 112 chr11 23210607 23210696 -125572776 + L2 LINE L2 3231 3309 -4 1911 110 11 4 chr11 23210808 23211072 -125572400 + AluSc SINE Alu 1 266 -43 373 141 28 14 chr11 23211096 23211167 -125572305 + Alu SINE Alu 228 299 -1 739 259 5 0 chr11 23262790 23262995 -125520477 - L1P LINE L1 -860 5286 5081 1396 73 10 21 chr11 23262999 23263191 -125520281 + MER50-int LTR ERV1 700 889 -6316 2161 208 28 6 chr11 23263191 23263697 -125519775 - L1P LINE L1 -1057 5089 4573 234 265 108 20 chr11 23263919 23264021 -125519451 + MIR SINE MIR 60 170 -92 302 355 14 7 chr11 23264080 23264221 -125519251 - L3 LINE CR1 -380 1197 1056 312 255 147 34 chr11 23266375 23266496 -125516976 - MER5B DNA MER1_type -4 185 38 374 252 122 48 chr11 23266688 23266835 -125516637 + MIR SINE MIR 57 214 -48 233 287 19 37 chr11 23266881 23266989 -125516483 + (CATATA)n Simple_repeat Simple_repeat 2 107 0 189 107 0 0 chr11 23267053 23267081 -125516391 + (A)n Simple_repeat Simple_repeat 1 28 0 761 190 95 62 chr11 23267824 23268035 -125515437 - MER20 DNA MER1_type -1 218 1 21 0 0 0 chr11 23268074 23268095 -125515377 + AT_rich Low_complexity Low_complexity 1 21 0 465 298 24 67 chr11 23268193 23268454 -125515018 + MIR SINE MIR 14 262 0 267 286 43 0 chr11 23268449 23268519 -125514953 - L2 LINE L2 -6 3266 3194 * 24 0 0 0 chr11 23268567 23268591 -125514881 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chr11 23268759 23268782 -125514690 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 372 22 0 0 chr11 23268781 23268826 -125514646 + (CA)n Simple_repeat Simple_repeat 2 46 0 242 158 24 73 chr11 23268831 23268913 -125514559 + L1MC4 LINE L1 6626 6703 -1339 2427 65 0 13 chr11 23268932 23269242 -125514230 - AluY SINE Alu -5 306 1 466 34 0 0 chr11 23269787 23269846 -125513626 + L1PA6 LINE L1 6091 6149 -5 199 301 90 38 chr11 23269874 23270007 -125513465 + L2 LINE L2 2909 3048 -224 270 68 45 0 chr11 23270068 23270112 -125513360 - AluSc SINE Alu -1 298 253 1019 87 0 0 chr11 23270113 23270240 -125513232 - AluSq/x SINE Alu -185 127 1 22 70 0 0 chr11 23270287 23270330 -125513142 + AT_rich Low_complexity Low_complexity 1 43 0 2123 127 3 13 chr11 23272470 23272784 -125510688 + AluSq SINE Alu 1 311 -2 914 216 76 113 chr11 23273694 23274179 -125509293 - HAL1 LINE L1 0 2507 2041 366 292 17 25 chr11 23274448 23274568 -125508904 - L2 LINE L2 0 3313 3195 661 201 50 22 chr11 23274590 23274769 -125508703 - MER53 DNA DNA -5 184 1 1328 308 42 19 chr11 23274806 23275429 -125508043 - L2 LINE L2 -151 3162 2530 456 289 103 64 chr11 23275549 23276005 -125507467 - HAL1 LINE L1 -1987 520 47 194 301 97 39 chr11 23277066 23277169 -125506303 + MIR SINE MIR 81 189 -73 532 315 55 5 chr11 23277488 23277688 -125505784 + MIR SINE MIR 4 213 -49 503 249 83 12 chr11 23277754 23277923 -125505549 - MIR SINE MIR -15 247 67 201 300 0 0 chr11 23278935 23278985 -125504487 + CT-rich Low_complexity Low_complexity 2 51 0 270 317 50 10 chr11 23279281 23279382 -125504090 - L2 LINE L2 0 3272 3168 183 80 0 0 chr11 23279377 23279402 -125504070 + L2 LINE L2 3283 3307 -6 * 256 234 0 0 chr11 23279568 23279615 -125503857 - MER91 DNA MER1_type -93 47 1 21 0 0 0 chr11 23280928 23280949 -125502523 + AT_rich Low_complexity Low_complexity 1 21 0 2251 58 6 37 chr11 23281621 23281946 -125501526 + L1PA5 LINE L1 5840 6154 0 1687 173 65 0 chr11 23282244 23282568 -125500904 + MER7A DNA MER2_type 2 344 -2 434 280 3 0 chr11 23283018 23283136 -125500336 + MIR SINE MIR 50 145 -63 269 355 74 32 chr11 23283582 23284080 -125499392 - L2 LINE L2 -1037 2277 1759 4189 166 5 34 chr11 23284709 23285099 -125498373 - L1MA8 LINE L1 -2 6289 5889 3384 98 46 60 chr11 23285099 23285661 -125497811 - MER41A LTR ERV1 0 554 1 4189 166 5 34 chr11 23285661 23286102 -125497370 - L1MA8 LINE L1 -402 5889 5482 3020 137 18 2 chr11 23287065 23287554 -125495918 - LOR1a LTR ERV1 0 497 1 1646 174 166 39 chr11 23288603 23288956 -125494516 - LOR1b LTR ERV1 0 461 154 214 39 0 0 chr11 23288956 23288982 -125494490 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2129 104 0 21 chr11 23288982 23289271 -125494201 - AluSx SINE Alu -1 308 1 1646 174 166 39 chr11 23289271 23289325 -125494147 - LOR1b LTR ERV1 -306 155 1 3316 124 12 2 chr11 23289490 23289982 -125493490 - LOR1a LTR ERV1 0 497 1 22 35 0 0 chr11 23292962 23292991 -125490481 + AT_rich Low_complexity Low_complexity 1 29 0 1632 230 74 18 chr11 23293235 23293692 -125489780 - MLT1D LTR MaLR -2 503 21 234 339 129 54 chr11 23294160 23294532 -125488940 + L3 LINE CR1 1134 1533 -44 239 292 0 28 chr11 23294749 23294821 -125488651 - MIR SINE MIR -57 151 82 230 261 87 0 chr11 23294917 23294986 -125488486 - MIR3 SINE MIR -11 197 123 992 222 104 28 chr11 23295223 23295595 -125487877 - L1ME LINE L1 -545 5621 5230 212 128 0 21 chr11 23295635 23295682 -125487790 + (CCCCCT)n Simple_repeat Simple_repeat 2 47 0 1984 124 28 3 chr11 23295710 23295992 -125487480 - AluSx SINE Alu -23 289 1 1567 216 118 14 chr11 23296003 23296442 -125487030 - L1ME LINE L1 -957 5189 4705 5111 173 149 11 chr11 23296470 23298246 -125485226 - L1PA16 LINE L1 -9 6157 4114 904 234 190 5 chr11 23298235 23298641 -125484831 - L1ME LINE L1 -1434 4712 4232 * 2326 91 3 3 chr11 23298967 23299275 -125484197 + AluSp SINE Alu 1 308 -5 186 133 0 0 chr11 23300508 23300538 -125482934 + (TG)n Simple_repeat Simple_repeat 2 31 0 283 96 39 0 chr11 23300576 23300628 -125482844 + (TA)n Simple_repeat Simple_repeat 1 54 0 1833 170 49 95 chr11 23302846 23303218 -125480254 + MER70A LTR ERVL 37 386 -86 1447 168 24 54 chr11 23303218 23303516 -125479956 - AluJb SINE Alu -23 289 1 1833 170 49 95 chr11 23303516 23303595 -125479877 + MER70A LTR ERVL 386 467 -5 180 77 0 0 chr11 23303639 23303665 -125479807 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 298 185 65 0 chr11 23303893 23303985 -125479487 + L1MC4 LINE L1 6606 6703 -1339 242 226 0 47 chr11 23303905 23304011 -125479461 - L1MC4 LINE L1 -1339 6703 6603 * 424 253 88 47 chr11 23304224 23304394 -125479078 + MER5B DNA MER1_type 2 178 0 225 178 0 0 chr11 23305798 23305843 -125477629 + (TATATG)n Simple_repeat Simple_repeat 6 50 0 239 315 14 27 chr11 23306056 23306129 -125477343 + L2 LINE L2 3188 3259 -54 21 71 0 0 chr11 23306443 23306485 -125476987 + AT_rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr11 23307111 23307135 -125476337 + AT_rich Low_complexity Low_complexity 1 24 0 25 65 0 0 chr11 23307365 23307411 -125476061 + AT_rich Low_complexity Low_complexity 1 46 0 349 286 196 28 chr11 23307864 23308119 -125475353 - L2 LINE L2 -52 3261 2964 595 220 0 0 chr11 23308447 23308588 -125474884 + MER53 DNA DNA 37 177 -12 228 224 41 31 chr11 23309309 23309407 -125474065 + (CCCCG)n Simple_repeat Simple_repeat 1 99 0 417 308 182 0 chr11 23309950 23310093 -125473379 - MER5A DNA MER1_type -6 183 15 216 0 0 0 chr11 23310099 23310123 -125473349 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 538 241 102 81 chr11 23310241 23310585 -125472887 - L1ME1 LINE L1 -2 6164 5814 456 207 62 35 chr11 23310641 23310786 -125472686 + MER67C LTR ERV1 3 151 -559 1831 137 32 0 chr11 23310795 23311079 -125472393 + AluSx SINE Alu 1 293 -19 297 51 0 0 chr11 23311079 23311118 -125472354 + (GGGGA)n Simple_repeat Simple_repeat 4 42 0 389 240 133 31 chr11 23311157 23311353 -125472119 + MER67C LTR ERV1 161 376 -334 778 153 79 16 chr11 23311374 23311563 -125471909 + MER67C LTR ERV1 498 698 -12 2095 150 51 27 chr11 23311812 23312225 -125471247 + MER44D DNA MER2_type 50 527 -78 1803 193 92 57 chr11 23312229 23312721 -125470751 + MER67D LTR ERV1 1 509 -5 858 276 46 81 chr11 23312731 23313059 -125470413 - L1ME1 LINE L1 -63 6103 5765 699 192 0 0 chr11 23313059 23313189 -125470283 + FLAM_A SINE Alu 4 133 0 1219 218 57 7 chr11 23313191 23313471 -125470001 + AluJb SINE Alu 1 294 -18 858 276 46 81 chr11 23313471 23313660 -125469812 - L1ME1 LINE L1 -402 5764 5601 4630 124 54 4 chr11 23313664 23314406 -125469066 + MER4E LTR ERV1 1 779 0 2368 108 11 11 chr11 23314406 23314758 -125468714 + MER4E-int LTR ERV1 1 352 -6406 1303 94 57 66 chr11 23314768 23314809 -125468663 + MER4E-int LTR ERV1 714 754 -6004 2511 47 0 0 chr11 23314809 23315105 -125468367 + AluY SINE Alu 1 296 -15 1303 94 57 66 chr11 23315105 23315457 -125468015 + MER4E-int LTR ERV1 754 1158 -5600 201 74 0 0 chr11 23315462 23315489 -125467983 + (TATG)n Simple_repeat Simple_repeat 2 28 0 2476 121 105 42 chr11 23315506 23316051 -125467421 + MER4E-int LTR ERV1 1766 2344 -4254 1734 167 56 7 chr11 23316045 23316351 -125467121 + MER4B-int LTR ERV1 3767 4087 -2671 * 9676 129 83 31 chr11 23316352 23318115 -125465357 + MER4B-int LTR ERV1 4453 6307 -451 318 80 0 0 chr11 23318115 23318165 -125465307 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 1409 128 80 24 chr11 23318174 23318282 -125465190 + MER4B-int LTR ERV1 6381 6482 -276 198 0 0 0 chr11 23318282 23318304 -125465168 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 1409 128 80 24 chr11 23318304 23318445 -125465027 + MER4B-int LTR ERV1 6482 6644 -114 258 56 0 0 chr11 23318445 23318481 -125464991 + (CAA)n Simple_repeat Simple_repeat 3 38 0 4808 167 28 3 chr11 23318904 23319753 -125463719 - Tigger1 DNA MER2_type -1547 871 2 2143 253 76 16 chr11 23319765 23320647 -125462825 + L1M4 LINE L1 2264 3092 -3054 294 29 0 0 chr11 23320647 23320682 -125462790 + (TA)n Simple_repeat Simple_repeat 2 36 0 2245 112 7 0 chr11 23320682 23320986 -125462486 - AluSc SINE Alu -3 306 1 2143 253 76 16 chr11 23320986 23321076 -125462396 + L1M4 LINE L1 3091 3295 -2851 207 129 43 21 chr11 23321138 23321231 -125462241 + (TA)n Simple_repeat Simple_repeat 2 96 0 547 276 26 0 chr11 23321235 23321391 -125462081 + L1M4 LINE L1 3485 3644 -2502 620 254 51 83 chr11 23321392 23321872 -125461600 - MER74A LTR ERVL -1 557 21 398 167 39 0 chr11 23321872 23321950 -125461522 + L1MA5 LINE L1 6220 6300 0 357 295 77 19 chr11 23322265 23322421 -125461051 - L1MEc LINE L1 -4891 1326 1162 1608 112 0 9 chr11 23322428 23322660 -125460812 + THE1B LTR MaLR 1 230 -134 1051 128 19 0 chr11 23322689 23322700 -125460772 + THE1B LTR MaLR 206 215 -149 1742 153 28 21 chr11 23322700 23322987 -125460485 + AluSx SINE Alu 11 299 -13 1051 128 19 0 chr11 23322987 23323131 -125460341 + THE1B LTR MaLR 215 364 0 9920 129 41 3 chr11 23323131 23324653 -125458819 + THE1B-int LTR MaLR 1 1580 0 2170 148 25 8 chr11 23324653 23325011 -125458461 + THE1B LTR MaLR 1 364 0 1380 283 81 60 chr11 23325037 23326173 -125457299 - L1MEc LINE L1 -4996 1250 107 23 0 0 0 chr11 23327030 23327053 -125456419 + AT_rich Low_complexity Low_complexity 1 23 0 2176 124 0 0 chr11 23327639 23327938 -125455534 + AluSx SINE Alu 1 299 -13 303 277 101 0 chr11 23328260 23328379 -125455093 + MER5C DNA MER1_type 1 131 -193 3196 142 14 11 chr11 23329000 23329235 -125454237 - L1PB1 LINE L1 -3 6148 5915 3462 130 71 14 chr11 23329235 23329813 -125453659 - LTR9 LTR ERV1 -1 611 1 3196 142 14 11 chr11 23329813 23330127 -125453345 - L1PB1 LINE L1 -236 5915 5597 333 0 0 0 chr11 23330418 23330455 -125453017 + (TA)n Simple_repeat Simple_repeat 2 38 0 919 83 0 0 chr11 23330455 23330576 -125452896 - AluY SINE Alu -4 307 187 9115 234 59 42 chr11 23331022 23331651 -125451821 + L1ME3 LINE L1 1 617 -5947 3120 139 85 57 chr11 23331651 23332357 -125451115 + LTR8A LTR ERV1 2 727 0 9115 234 59 42 chr11 23332357 23337108 -125446364 + L1ME3 LINE L1 617 5528 -1036 183 386 11 11 chr11 23337110 23337198 -125446274 - MIR SINE MIR -155 107 20 739 291 62 26 chr11 23338100 23338489 -125444983 + L1ME3 LINE L1 5963 6365 -215 1828 121 19 59 chr11 23340461 23340783 -125442689 - AluSx SINE Alu -3 309 1 487 303 100 17 chr11 23340963 23341194 -125442278 - MIR SINE MIR -10 252 3 335 321 42 38 chr11 23342421 23342633 -125440839 + MIR SINE MIR 50 262 0 207 304 18 0 chr11 23342658 23342714 -125440758 - L3 LINE CR1 -11 1566 1510 336 335 139 14 chr11 23342769 23342978 -125440494 - L3 LINE CR1 -75 1502 1268 534 241 190 128 chr11 23342983 23343329 -125440143 - LTR50 LTR ERVL -212 583 189 255 61 0 0 chr11 23343329 23343362 -125440110 + (CAAA)n Simple_repeat Simple_repeat 3 35 0 534 241 190 128 chr11 23343362 23343563 -125439909 - LTR50 LTR ERVL -606 189 2 1885 197 50 24 chr11 23343610 23343867 -125439605 + MSTB1 LTR MaLR 1 275 -157 2298 86 3 7 chr11 23343867 23344168 -125439304 - AluSc SINE Alu -9 300 1 1885 197 50 24 chr11 23344168 23344331 -125439141 + MSTB1 LTR MaLR 275 432 0 895 246 188 65 chr11 23344441 23344904 -125438568 + MLT2D LTR ERVL 1 520 0 591 220 28 0 chr11 23345198 23345339 -125438133 + MER103 DNA DNA 11 155 -11 4889 169 80 29 chr11 23345418 23346388 -125437084 + LTR28 LTR ERV1 1 1020 0 275 309 31 10 chr11 23347455 23347552 -125435920 - L2 LINE L2 0 3272 3174 586 254 85 12 chr11 23347596 23347761 -125435711 + MER45A DNA AcHobo 1 177 -1 445 71 29 0 chr11 23347788 23347858 -125435614 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 694 353 86 16 chr11 23347940 23348371 -125435101 - L3 LINE CR1 -699 878 418 1960 147 17 0 chr11 23348473 23348772 -125434700 + AluSx SINE Alu 1 304 -8 1237 198 180 49 chr11 23348856 23349301 -125434171 - MLT1D LTR MaLR 0 505 3 304 100 0 0 chr11 23349585 23349625 -125433847 - AluJ/FLAM SINE Alu -203 99 60 1088 189 44 22 chr11 23349625 23349853 -125433619 + AluJb SINE Alu 71 303 -9 1672 143 68 0 chr11 23351233 23351543 -125431929 - AluSx SINE Alu 0 328 1 21 0 0 0 chr11 23351700 23351721 -125431751 + AT_rich Low_complexity Low_complexity 1 21 0 1130 171 22 0 chr11 23354356 23354584 -125428888 + L1MA4 LINE L1 6062 6294 -6 23 33 0 0 chr11 23355393 23355423 -125428049 + AT_rich Low_complexity Low_complexity 1 30 0 283 359 63 30 chr11 23356353 23356590 -125426882 + L2 LINE L2 2618 2862 -452 184 229 57 57 chr11 23356638 23356708 -125426764 + L2 LINE L2 3185 3254 -59 350 315 142 0 chr11 23356934 23357096 -125426376 + L3 LINE CR1 1385 1569 -8 730 231 31 12 chr11 23357719 23357879 -125425593 - FRAM SINE Alu -21 155 1 410 315 52 24 chr11 23357944 23358195 -125425277 + L1MC4a LINE L1 5679 5936 -1872 556 49 12 12 chr11 23359680 23359761 -125423711 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 354 211 62 31 chr11 23360053 23360181 -125423291 - L1ME4a LINE L1 -223 5898 5767 355 171 14 14 chr11 23360234 23360304 -125423168 - MLT1K LTR MaLR 0 588 519 509 211 18 9 chr11 23360441 23360550 -125422922 - MER81 DNA DNA -2 112 3 2419 100 0 0 chr11 23360700 23361010 -125422462 + AluSg SINE Alu 1 310 0 302 291 8 68 chr11 23361536 23361653 -125421819 + L2 LINE L2 3141 3250 -22 29 47 0 0 chr11 23362304 23362347 -125421125 + AT_rich Low_complexity Low_complexity 1 43 0 2009 133 33 0 chr11 23362599 23362727 -125420745 + AluSx SINE Alu 1 123 -189 216 0 0 0 chr11 23362727 23362751 -125420721 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 2009 133 33 0 chr11 23362751 23362924 -125420548 + AluSx SINE Alu 123 312 0 1991 121 0 0 chr11 23363029 23363301 -125420171 - AluSx SINE Alu -17 295 24 249 363 159 0 chr11 23363414 23363527 -125419945 + MIR3 SINE MIR 30 160 -48 1774 171 22 39 chr11 23364337 23364700 -125418772 + L1MDa LINE L1 6 362 -6178 1192 264 19 28 chr11 23364704 23365174 -125418298 + L1M4 LINE L1 2367 2832 -3314 1534 237 11 25 chr11 23365186 23365544 -125417928 - MLT1A1 LTR MaLR -12 353 1 2425 258 101 58 chr11 23365554 23367893 -125415579 + L1M4 LINE L1 2839 5169 -977 218 308 83 8 chr11 23368473 23368593 -125414879 + L2 LINE L2 3183 3311 -2 832 88 0 16 chr11 23368859 23368984 -125414488 - L1PB1 LINE L1 0 6151 6029 635 289 161 23 chr11 23370427 23370769 -125412703 + MLT1L LTR MaLR 225 613 -2 2331 114 0 0 chr11 23371285 23371591 -125411881 + AluSg SINE Alu 3 308 -2 995 298 57 61 chr11 23372123 23372629 -125410843 - LTR67 LTR ERVL 0 557 54 717 174 55 119 chr11 23372635 23372836 -125410636 + MER20 DNA MER1_type 32 219 0 2298 178 14 14 chr11 23372998 23373424 -125410048 - MSTB LTR MaLR 0 426 1 278 287 19 46 chr11 23374515 23374623 -125408849 - MIR SINE MIR -60 202 98 287 241 82 72 chr11 23375137 23375201 -125408271 - MER112 DNA MER1_type -5 255 193 2453 112 22 3 chr11 23375201 23375558 -125407914 - THE1B LTR MaLR 0 364 1 287 241 82 72 chr11 23375558 23375700 -125407772 - MER112 DNA MER1_type -67 193 47 2249 87 10 7 chr11 23375818 23376118 -125407354 + AluY SINE Alu 1 301 -10 277 414 83 0 chr11 23377348 23377505 -125405967 - L2 LINE L2 0 3272 3103 187 298 183 0 chr11 23377796 23377900 -125405572 - MIR SINE MIR -11 251 129 664 296 40 8 chr11 23378623 23378873 -125404599 + MIR SINE MIR 2 259 -3 375 31 0 47 chr11 23378897 23378961 -125404511 + (TA)n Simple_repeat Simple_repeat 1 61 0 499 251 44 101 chr11 23379103 23379330 -125404142 - MIR SINE MIR -1 261 48 455 380 10 0 chr11 23380217 23380422 -125403050 - LTR33 LTR ERVL -310 211 5 22 56 0 0 chr11 23382040 23382076 -125401396 + AT_rich Low_complexity Low_complexity 1 36 0 227 277 0 0 chr11 23382080 23382127 -125401345 + MER113 DNA MER1_type? 475 521 0 22 35 0 0 chr11 23382538 23382567 -125400905 + AT_rich Low_complexity Low_complexity 1 29 0 216 135 0 0 chr11 23382652 23382689 -125400783 + (TATG)n Simple_repeat Simple_repeat 1 37 0 294 323 61 23 chr11 23382823 23383018 -125400454 + MLT1J LTR MaLR 319 611 -4 5620 155 9 5 chr11 23383130 23384095 -125399377 - L1MA8 LINE L1 0 6291 5323 266 290 131 51 chr11 23384285 23384461 -125399011 - MIR SINE MIR -6 256 67 292 87 22 0 chr11 23384527 23384573 -125398899 - MADE1 DNA Mariner -33 47 1 1502 304 134 26 chr11 23384578 23385319 -125398153 + L2 LINE L2 1853 2673 -641 741 316 57 60 chr11 23385390 23385826 -125397646 + L2 LINE L2 2875 3309 -4 285 313 27 41 chr11 23385902 23386049 -125397423 - MER5A DNA MER1_type -16 173 29 1286 251 115 50 chr11 23386128 23386669 -125396803 + MLT1E2 LTR MaLR 51 626 0 26 50 0 0 chr11 23387012 23387052 -125396420 + AT_rich Low_complexity Low_complexity 1 40 0 219 339 96 17 chr11 23387145 23387260 -125396212 + MER91C DNA MER1_type 17 140 0 968 247 188 3 chr11 23387327 23387635 -125395837 + MLT1A1 LTR MaLR 1 365 0 2254 102 0 6 chr11 23387657 23387970 -125395502 + AluY SINE Alu 1 311 0 192 381 67 0 chr11 23388024 23388129 -125395343 + MIR3 SINE MIR 87 198 -10 18203 27 1 1 chr11 23388254 23391200 -125392272 + L1PA3 LINE L1 3207 6152 -3 22 35 0 0 chr11 23392012 23392041 -125391431 + AT_rich Low_complexity Low_complexity 1 29 0 771 230 86 19 chr11 23392061 23392270 -125391202 - L1ME1 LINE L1 -6 6160 5938 292 211 0 70 chr11 23392427 23392498 -125390974 - MLT2D LTR ERVL -355 59 1 1701 231 58 21 chr11 23392498 23393114 -125390358 - L1M4 LINE L1 -1278 4868 4230 25 0 0 0 chr11 23393807 23393832 -125389640 + AT_rich Low_complexity Low_complexity 1 25 0 1360 212 51 66 chr11 23394499 23394951 -125388521 - MER65A LTR ERV1 0 445 1 195 42 0 0 chr11 23395036 23395060 -125388412 + (TG)n Simple_repeat Simple_repeat 1 24 0 453 297 61 93 chr11 23395098 23395539 -125387933 - MLT1H LTR MaLR 0 549 123 182 392 0 14 chr11 23395615 23395689 -125387783 + MIR3 SINE MIR 105 177 -31 23 0 0 0 chr11 23395800 23395823 -125387649 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr11 23396446 23396468 -125387004 + (TAAAA)n Simple_repeat Simple_repeat 3 24 0 2286 80 3 0 chr11 23397808 23398096 -125385376 - AluSc SINE Alu -15 294 6 203 227 15 0 chr11 23398104 23398170 -125385302 + CT-rich Low_complexity Low_complexity 2 68 0 600 136 12 206 chr11 23398292 23398535 -125384937 + L1MA9 LINE L1 6117 6312 0 581 313 21 38 chr11 23398961 23398995 -125384477 - L1ME1 LINE L1 -26 6140 6107 5052 88 14 3 chr11 23398995 23399709 -125383763 - LTR30 LTR ERV1 0 722 1 581 313 21 38 chr11 23399709 23399962 -125383510 - L1ME1 LINE L1 -59 6107 5858 890 174 13 0 chr11 23399974 23400123 -125383349 - FRAM SINE Alu -10 166 16 239 263 45 0 chr11 23400156 23400289 -125383183 - L1MDb LINE L1 -4042 2364 2226 * 2244 233 63 49 chr11 23400285 23400504 -125382968 - L1MDb LINE L1 -4552 1854 1640 796 219 46 46 chr11 23400504 23400723 -125382749 - MER20 DNA MER1_type 0 219 1 2244 233 63 49 chr11 23400723 23401251 -125382221 - L1MDb LINE L1 -4766 1640 1121 1941 138 0 0 chr11 23401251 23401554 -125381918 - AluSx SINE Alu 0 303 1 2244 233 63 49 chr11 23401554 23401774 -125381698 - L1MDb LINE L1 -5285 1121 901 621 204 0 36 chr11 23401774 23401911 -125381561 - FLAM_C SINE Alu 0 133 2 2244 233 63 49 chr11 23401911 23402032 -125381440 - L1MDb LINE L1 -5505 901 783 269 369 8 0 chr11 23402774 23402904 -125380568 - L1MDb LINE L1 -5935 461 331 234 280 42 56 chr11 23403195 23403338 -125380134 + MER117 DNA MER1_type 6 146 -51 313 363 62 0 chr11 23403696 23403856 -125379616 + MER20B DNA MER1_type 2 171 -612 1827 245 85 18 chr11 23403937 23404595 -125378877 + Zaphod DNA AcHobo 178 879 -3152 1321 213 40 4 chr11 23405865 23405987 -125377485 + AluJo SINE Alu 1 117 -195 450 0 0 0 chr11 23405987 23406037 -125377435 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 1321 213 40 4 chr11 23406037 23406186 -125377286 + AluJo SINE Alu 117 282 -30 22 70 0 0 chr11 23406548 23406591 -125376881 + AT_rich Low_complexity Low_complexity 1 43 0 7825 85 3 27 chr11 23457047 23458193 -125325279 + L1P LINE L1 3282 4400 -1746 6262 117 8 14 chr11 23458293 23459334 -125324138 + L1P LINE L1 2241 3274 -2872 7183 129 2 30 chr11 23459434 23460614 -125322858 - L1P LINE L1 -4439 1707 561 1889 143 61 28 chr11 23461013 23461376 -125322096 - THE1C LTR MaLR 0 375 1 2239 117 0 0 chr11 23461522 23461820 -125321652 + AluSx SINE Alu 1 298 -14 32 26 0 0 chr11 23461830 23461869 -125321603 + AT_rich Low_complexity Low_complexity 1 39 0 894 193 13 25 chr11 23463497 23463736 -125319736 + L1P LINE L1 5127 5362 -784 2233 52 0 0 chr11 23463767 23464034 -125319438 - AluY SINE Alu -44 267 1 903 76 0 0 chr11 23464432 23464551 -125318921 - AluSp/q SINE Alu -1 312 194 347 298 161 18 chr11 23464804 23465022 -125318450 - MIR SINE MIR -12 250 2 4139 241 58 12 chr11 23465805 23467064 -125316408 - L1M4 LINE L1 -1827 4319 3003 2817 13 0 0 chr11 23467187 23467497 -125315975 + AluYa5 SINE Alu 1 310 -1 2544 52 0 10 chr11 23467546 23467854 -125315618 + AluY SINE Alu 1 305 -6 273 29 0 0 chr11 23469219 23469253 -125314219 + (TG)n Simple_repeat Simple_repeat 2 35 0 913 177 79 10 chr11 23469703 23469906 -125313566 + MER20 DNA MER1_type 1 217 -2 2424 172 21 34 chr11 23470175 23470645 -125312827 - L1MCa LINE L1 -5943 483 20 231 275 14 0 chr11 23471652 23471721 -125311751 + MIR3 SINE MIR 126 195 -13 2141 108 3 10 chr11 23472057 23472362 -125311110 + AluSp SINE Alu 1 303 -10 252 312 136 40 chr11 23472849 23472934 -125310538 + MIR3 SINE MIR 48 150 -58 2293 188 48 30 chr11 23472934 23473430 -125310042 - MLT1D LTR MaLR 0 505 1 252 312 136 40 chr11 23473430 23473469 -125310003 + MIR3 SINE MIR 150 184 -24 288 204 0 19 chr11 23474497 23474551 -125308921 + FLAM_A SINE Alu 67 119 -14 21 0 0 0 chr11 23474613 23474634 -125308838 + AT_rich Low_complexity Low_complexity 1 21 0 2123 108 7 0 chr11 23474827 23475124 -125308348 - AluSq SINE Alu -1 312 14 2856 65 35 5 chr11 23475192 23475590 -125307882 + L1PA8 LINE L1 5763 6172 0 213 308 31 0 chr11 23475750 23475815 -125307657 - MIR3 SINE MIR -19 189 123 380 23 0 0 chr11 23477553 23477597 -125305875 - THE1B LTR MaLR -320 44 1 184 210 99 49 chr11 23477944 23478025 -125305447 - MIR SINE MIR -92 170 86 2426 72 0 86 chr11 23478199 23478618 -125304854 - L1P LINE L1 -3638 2508 2126 * 7810 133 11 28 chr11 23478599 23479938 -125303534 - L1P LINE L1 -3869 2277 962 469 286 40 29 chr11 23480142 23480317 -125303155 - MIR SINE MIR -79 183 7 14805 70 8 14 chr11 23482262 23484275 -125299197 + L1P LINE L1 3249 5248 -898 391 301 85 22 chr11 23484380 23484535 -125298937 - MIR SINE MIR -69 139 30 24 111 0 0 chr11 23485030 23485138 -125298334 + AT_rich Low_complexity Low_complexity 1 108 0 444 274 157 24 chr11 23485668 23485923 -125297549 + L3 LINE CR1 423 711 -866 391 165 0 143 chr11 23486602 23486735 -125296737 - Charlie7 DNA MER1_type -2 2610 2497 1220 244 102 8 chr11 23488102 23488484 -125294988 + LTR52 LTR ERVL 1 418 -3 4014 128 47 69 chr11 23488495 23489297 -125294175 + LTR1 LTR ERV1 1 785 0 313 231 68 116 chr11 23489304 23489451 -125294021 + L2 LINE L2 3169 3308 -5 2301 143 78 5 chr11 23489596 23489995 -125293477 - MSTA LTR MaLR 0 428 1 3365 61 0 0 chr11 23491874 23492299 -125291173 - L1PA5 LINE L1 -11 6143 5719 4681 219 31 21 chr11 23492763 23494523 -125288949 + L1PA15-16 LINE L1 2077 3838 -3011 883 216 4 4 chr11 23494490 23494722 -125288750 + L1MA4 LINE L1 3971 4202 -2647 * 10924 159 19 14 chr11 23494840 23496866 -125286606 - L1P LINE L1 -2581 3565 1531 13632 123 20 9 chr11 23496967 23499066 -125284406 + Tigger1 DNA MER2_type 298 2418 0 5390 166 26 14 chr11 23499212 23500941 -125282531 + L1MA4 LINE L1 4545 6294 -6 2020 127 0 26 chr11 23500951 23501259 -125282213 + AluSx SINE Alu 1 300 -12 2250 75 4 0 chr11 23501276 23501597 -125281875 + AluY SINE Alu 1 322 0 354 311 15 15 chr11 23503235 23503451 -125280021 - MER66-int LTR ERV1 -5043 1633 526 274 213 0 0 chr11 23504698 23504759 -125278713 - LTR58 LTR ERV1 -269 410 350 225 296 59 15 chr11 23506222 23506357 -125277115 + L1M4 LINE L1 3770 3910 -2236 24 0 0 0 chr11 23506382 23506406 -125277066 + AT_rich Low_complexity Low_complexity 1 24 0 299 379 37 23 chr11 23506534 23506748 -125276724 - MLT1I LTR MaLR -130 279 63 22 0 0 0 chr11 23506931 23506953 -125276519 + AT_rich Low_complexity Low_complexity 1 22 0 1720 168 90 13 chr11 23507044 23507354 -125276118 - MER1B DNA MER1_type 0 337 4 391 320 63 17 chr11 23508764 23508939 -125274533 - MLT2F LTR ERVL -480 183 1 680 255 81 67 chr11 23508942 23509106 -125274366 - ERVL-F LTR ERVL -13 5751 5591 2156 82 10 17 chr11 23509106 23509400 -125274072 - AluY SINE Alu -19 292 1 680 255 81 67 chr11 23509400 23509670 -125273802 - ERVL-F LTR ERVL -173 5591 5311 1900 137 70 6 chr11 23509704 23510017 -125273455 + MER1B DNA MER1_type 3 335 -2 2734 284 56 12 chr11 23510018 23510846 -125272626 - ERVL-F LTR ERVL -541 5223 4360 5883 113 71 0 chr11 23511043 23511984 -125271488 - L1PA10 LINE L1 0 6168 5207 28 0 0 0 chr11 23512078 23512106 -125271366 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr11 23512125 23512153 -125271319 + AT_rich Low_complexity Low_complexity 1 28 0 1668 191 30 64 chr11 23512226 23512630 -125270842 + MLT1B LTR MaLR 1 390 0 183 293 0 35 chr11 23513117 23513175 -125270297 - L2 LINE L2 -2 3270 3215 210 308 0 0 chr11 23514075 23514127 -125269345 - L2 LINE L2 -5 3267 3216 2029 97 17 24 chr11 23514443 23514731 -125268741 + AluSc SINE Alu 3 288 -21 181 246 87 116 chr11 23514758 23514896 -125268576 - L2 LINE L2 -299 2973 2840 183 343 36 58 chr11 23515046 23515183 -125268289 + L2 LINE L2 3180 3313 0 26 0 0 0 chr11 23515801 23515827 -125267645 + AT_rich Low_complexity Low_complexity 1 26 0 394 321 38 13 chr11 23516544 23516703 -125266769 + MIR SINE MIR 7 169 -93 196 258 48 65 chr11 23516740 23516802 -125266670 + L2 LINE L2 3191 3251 -21 482 0 0 17 chr11 23516803 23516862 -125266610 + (TAGA)n Simple_repeat Simple_repeat 2 59 0 366 236 0 56 chr11 23516948 23517037 -125266435 + L2 LINE L2 3189 3272 0 557 246 34 0 chr11 23517254 23517372 -125266100 - L1M4b LINE L1 -6727 132 11 2056 129 3 0 chr11 23517668 23517954 -125265518 - AluSx SINE Alu -20 292 6 753 187 6 24 chr11 23518441 23518607 -125264865 - L1MA7 LINE L1 -64 6227 6065 499 159 28 0 chr11 23518890 23518997 -125264475 + L1MB8 LINE L1 6069 6178 0 183 319 0 0 chr11 23519257 23519304 -125264168 - L2 LINE L2 -23 3290 3244 2148 115 0 0 chr11 23519526 23519813 -125263659 + AluSg SINE Alu 1 287 -23 2091 127 0 19 chr11 23519950 23520258 -125263214 - AluSp SINE Alu -11 302 1 180 424 0 0 chr11 23520271 23520356 -125263116 - L2 LINE L2 -1 3271 3187 739 22 22 0 chr11 23520790 23520881 -125262591 + L1P2 LINE L1 5593 5685 -469 3122 198 15 52 chr11 23520963 23521832 -125261640 + LTR5 LTR ERVK 133 969 0 2514 127 5 16 chr11 23521832 23522211 -125261261 + MER1A DNA MER1_type 53 427 -102 492 322 58 6 chr11 23522317 23522488 -125260984 + MIR SINE MIR 24 203 -59 224 167 21 0 chr11 23522488 23522536 -125260936 + (TG)n Simple_repeat Simple_repeat 1 49 0 342 273 11 0 chr11 23522536 23522624 -125260848 + L1MC4 LINE L1 6615 6703 -1339 285 102 51 0 chr11 23522631 23522690 -125260782 + (TA)n Simple_repeat Simple_repeat 1 62 0 289 333 69 6 chr11 23523255 23523414 -125260058 - MIR SINE MIR -10 252 84 260 271 76 25 chr11 23523692 23523810 -125259662 + L1M4 LINE L1 4810 4933 -1213 23 54 0 0 chr11 23523861 23523898 -125259574 + AT_rich Low_complexity Low_complexity 1 37 0 534 306 99 40 chr11 23523940 23524492 -125258980 - L1MEd LINE L1 -4132 2178 1660 2138 95 24 20 chr11 23524492 23524788 -125258684 + AluSx SINE Alu 1 297 -15 534 306 99 40 chr11 23524788 23525313 -125258159 - L1MEd LINE L1 -4650 1660 969 355 217 0 0 chr11 23526465 23526525 -125256947 - Tigger7 DNA MER2_type 0 2487 2428 2773 190 23 29 chr11 23526534 23527060 -125256412 - Tigger7 DNA MER2_type -1964 523 1 505 103 23 0 chr11 23527680 23527767 -125255705 - L1MA5A LINE L1 0 6297 6209 250 160 0 0 chr11 23527876 23527926 -125255546 + (TA)n Simple_repeat Simple_repeat 1 50 0 912 133 38 0 chr11 23527926 23528084 -125255388 - L1MA5A LINE L1 -92 6205 6042 203 297 94 43 chr11 23528373 23528511 -125254961 + MIR SINE MIR 118 262 0 443 250 88 25 chr11 23528849 23529009 -125254463 - MIR SINE MIR -50 212 43 1904 150 0 16 chr11 23529040 23529347 -125254125 - AluJo SINE Alu -10 302 1 1515 173 24 79 chr11 23529618 23529947 -125253525 - AluJo SINE Alu -1 311 1 2387 49 0 0 chr11 23529964 23530251 -125253221 - L1P LINE L1 -5495 651 365 7886 31 0 3 chr11 23530251 23531968 -125251504 + L1PA3 LINE L1 4442 6155 0 437 131 0 0 chr11 23531970 23532031 -125251441 - FLAM SINE Alu -23 120 60 437 288 129 17 chr11 23532571 23532811 -125250661 + L1M4 LINE L1 3096 3362 -2784 205 229 0 62 chr11 23533165 23533261 -125250211 + T-rich Low_complexity Low_complexity 2 91 0 710 280 82 8 chr11 23534519 23534776 -125248696 + LTR16B LTR ERVL 187 462 -2 26 0 0 0 chr11 23535159 23535185 -125248287 + AT_rich Low_complexity Low_complexity 1 26 0 2883 124 140 22 chr11 23535962 23536511 -125246961 + LTR18B LTR ERVL 1 614 0 1664 188 0 11 chr11 23537129 23537441 -125246031 - AluJb SINE Alu 0 315 7 443 289 14 14 chr11 23537549 23537691 -125245781 - MER101 LTR ERV1 -55 419 278 1485 196 8 4 chr11 23537691 23537956 -125245516 + AluJo SINE Alu 1 266 -46 295 266 53 21 chr11 23537999 23538093 -125245379 - MER101B LTR ERV1 -276 294 198 341 203 13 38 chr11 23538394 23538473 -125244999 + MER5B DNA MER1_type 100 176 -2 32 91 0 0 chr11 23538554 23538642 -125244830 + AT_rich Low_complexity Low_complexity 1 88 0 1626 253 18 31 chr11 23538735 23539244 -125244228 - Charlie1b DNA MER1_type -15 508 7 4468 81 43 5 chr11 23539694 23540772 -125242700 - MER11A LTR ERVK 0 1266 1 352 262 70 21 chr11 23540915 23541086 -125242386 + L1ME3A LINE L1 5741 5886 -284 24 0 0 0 chr11 23541405 23541429 -125242043 + AT_rich Low_complexity Low_complexity 1 24 0 247 104 42 0 chr11 23541779 23541827 -125241645 + (TA)n Simple_repeat Simple_repeat 1 50 0 304 253 0 24 chr11 23541827 23541910 -125241562 + L1MC4 LINE L1 6612 6692 -1350 752 232 7 0 chr11 23542117 23542268 -125241204 + FRAM SINE Alu 2 153 -23 1031 283 108 26 chr11 23542292 23542755 -125240717 + HAL1 LINE L1 36 536 -1971 2502 50 20 0 chr11 23542833 23543135 -125240337 - AluY SINE Alu -3 308 1 241 283 141 0 chr11 23543329 23543506 -125239966 + HAL1 LINE L1 1956 2157 -350 677 181 84 48 chr11 23543518 23543625 -125239847 + MLT1B LTR MaLR 21 138 -252 2410 168 17 7 chr11 23543625 23544047 -125239425 + MSTB LTR MaLR 1 426 0 677 181 84 48 chr11 23544047 23544105 -125239367 + MLT1B LTR MaLR 138 192 -198 328 299 76 34 chr11 23544147 23544438 -125239034 + HAL1 LINE L1 2128 2430 -77 315 0 0 0 chr11 23544975 23545010 -125238462 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr11 23545414 23545435 -125238037 + AT_rich Low_complexity Low_complexity 1 21 0 554 290 92 39 chr11 23545756 23546115 -125237357 + MLT1J2 LTR MaLR 73 450 0 30 27 0 0 chr11 23546250 23546287 -125237185 + AT_rich Low_complexity Low_complexity 1 37 0 344 264 0 44 chr11 23546471 23546562 -125236910 - L2 LINE L2 0 3313 3227 * 355 366 99 14 chr11 23546558 23546779 -125236693 - MIR SINE MIR -3 259 20 186 299 130 0 chr11 23547707 23547784 -125235688 + MIR SINE MIR 120 206 -56 331 358 93 9 chr11 23547797 23548023 -125235449 + L3 LINE CR1 934 1178 -399 324 0 0 0 chr11 23548039 23548075 -125235397 + (A)n Simple_repeat Simple_repeat 1 36 0 3867 172 15 24 chr11 23548426 23548735 -125234737 + L1PA16 LINE L1 5192 5502 -664 2376 80 0 0 chr11 23548735 23549034 -125234438 + AluY SINE Alu 1 299 -12 3867 172 15 24 chr11 23549034 23549548 -125233924 + L1PA16 LINE L1 5502 6007 -159 453 304 58 38 chr11 23549556 23549822 -125233650 + MER115 DNA AcHobo 417 4030 -1 21 0 0 0 chr11 23550587 23550608 -125232864 + AT_rich Low_complexity Low_complexity 1 21 0 13284 37 0 2 chr11 23550959 23552602 -125230870 - L1PA3 LINE L1 -1681 4465 2827 7629 25 1 0 chr11 23552604 23554288 -125229184 + L1PA3 LINE L1 4464 6152 -3 367 246 82 45 chr11 23554742 23554876 -125228596 - MIR SINE MIR -107 155 17 398 329 7 7 chr11 23555123 23555263 -125228209 + MIR SINE MIR 111 250 -12 788 197 67 59 chr11 23555421 23555529 -125227943 - MER33 DNA MER1_type -2329 256 150 2333 77 3 0 chr11 23555529 23555828 -125227644 - AluY SINE Alu -10 301 2 788 197 67 59 chr11 23555828 23555973 -125227499 - MER33 DNA MER1_type -2435 150 1 533 294 32 18 chr11 23555976 23556172 -125227300 - MIR SINE MIR -64 198 3 873 189 18 77 chr11 23557034 23557256 -125226216 - Tigger1 DNA MER2_type 0 2418 2210 802 171 0 29 chr11 23557264 23557404 -125226068 - Tigger1 DNA MER2_type -2282 136 1 1691 189 9 0 chr11 23557439 23557756 -125225716 - L1MC1 LINE L1 -2 6331 6012 195 171 9 45 chr11 23558955 23559066 -125224406 + (TA)n Simple_repeat Simple_repeat 2 108 0 2520 186 15 9 chr11 23559645 23560103 -125223369 - LTR32 LTR ERVL 0 471 11 228 210 25 37 chr11 23560107 23560188 -125223284 - LTR58 LTR ERV1 -250 429 350 830 345 55 56 chr11 23561318 23563452 -125220020 - PABL_B-int LTR ERV1 -1621 6135 3315 1972 128 34 0 chr11 23563452 23563748 -125219724 + AluSx SINE Alu 1 306 -6 830 345 55 56 chr11 23563748 23564363 -125219109 - PABL_B-int LTR ERV1 -4441 3315 2700 371 257 103 63 chr11 23566025 23566200 -125217272 - MIR3 SINE MIR -26 182 1 2350 104 8 6 chr11 23566218 23566572 -125216900 - L1PA13 LINE L1 -5 6158 5804 187 340 62 0 chr11 23566728 23566825 -125216647 + L2 LINE L2 2953 3055 -217 21 57 0 0 chr11 23567431 23567466 -125216006 + AT_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr11 23567639 23567675 -125215797 + AT_rich Low_complexity Low_complexity 1 36 0 28 61 0 0 chr11 23567821 23567870 -125215602 + AT_rich Low_complexity Low_complexity 1 49 0 226 384 34 20 chr11 23568237 23568383 -125215089 - L2 LINE L2 0 3272 3125 534 119 59 20 chr11 23568552 23568653 -125214819 - L1MA5 LINE L1 -1 6299 6195 2021 165 16 8 chr11 23568654 23569029 -125214443 + L1MA6 LINE L1 5816 6193 -107 279 0 0 0 chr11 23569614 23569645 -125213827 + (A)n Simple_repeat Simple_repeat 1 31 0 826 264 141 6 chr11 23569689 23570015 -125213457 + MER66A LTR ERV1 99 468 -10 200 368 56 7 chr11 23570665 23570809 -125212663 - MIR SINE MIR -61 201 51 23 0 0 0 chr11 23570899 23570922 -125212550 + AT_rich Low_complexity Low_complexity 1 23 0 204 145 32 16 chr11 23570955 23571017 -125212455 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 1621 126 4 21 chr11 23571323 23571562 -125211910 - AluSg SINE Alu -18 292 58 344 111 16 0 chr11 23571566 23571629 -125211843 + (TC)n Simple_repeat Simple_repeat 1 64 0 2276 198 6 0 chr11 23572050 23572519 -125210953 - L1P LINE L1 -1463 4683 4212 306 270 44 36 chr11 23573705 23573842 -125209630 - L1MC4a LINE L1 -1913 5895 5758 2181 164 18 46 chr11 23573899 23574337 -125209135 - MSTB LTR MaLR 0 426 1 42 20 0 0 chr11 23574488 23574537 -125208935 + AT_rich Low_complexity Low_complexity 1 49 0 1269 191 58 20 chr11 23575338 23575631 -125207841 - L1MD1 LINE L1 -1 6241 5938 654 181 0 0 chr11 23575631 23575736 -125207736 + FLAM_C SINE Alu 17 121 -22 2504 174 28 21 chr11 23575743 23576284 -125207188 - L1MD1 LINE L1 -364 5878 5334 288 122 0 0 chr11 23576291 23576340 -125207132 + L1M4 LINE L1 5106 5154 -992 1180 159 72 24 chr11 23576340 23576591 -125206881 + Ricksha_b DNA DNA 371 633 -621 3842 239 55 25 chr11 23576631 23577247 -125206225 - L1MD1 LINE L1 -869 5277 4681 2180 148 22 6 chr11 23577247 23577605 -125205867 - THE1B LTR MaLR 0 364 1 3842 239 55 25 chr11 23577605 23578406 -125205066 - L1MD1 LINE L1 -1465 4681 3817 2823 60 0 3 chr11 23578671 23579035 -125204437 - L1PA6 LINE L1 0 6154 5792 435 236 7 40 chr11 23579057 23579205 -125204267 - L1M4 LINE L1 -903 5243 5101 226 288 0 0 chr11 23579264 23579344 -125204128 + (TA)n Simple_repeat Simple_repeat 2 81 0 6305 184 15 20 chr11 23579345 23580644 -125202828 + Ricksha_b DNA DNA 1 1646 -13 1530 266 59 37 chr11 23580688 23581371 -125202101 + L1MC4 LINE L1 6712 7409 -633 789 163 57 0 chr11 23581477 23581618 -125201854 - THE1C LTR MaLR -200 175 27 2579 232 17 18 chr11 23582629 23583280 -125200192 + L1MD3 LINE L1 7331 7980 -15 31 0 0 0 chr11 23583280 23583311 -125200161 + AT_rich Low_complexity Low_complexity 1 31 0 508 376 37 12 chr11 23583596 23583918 -125199554 - L3 LINE CR1 -32 1545 1216 210 293 17 95 chr11 23584730 23584846 -125198626 + L3 LINE CR1 1257 1363 -214 268 362 78 29 chr11 23585105 23585455 -125198017 + L2 LINE L2 2852 3292 -21 259 339 119 0 chr11 23585677 23585786 -125197686 + MIR SINE MIR 26 147 -115 22 35 0 0 chr11 23585840 23585869 -125197603 + AT_rich Low_complexity Low_complexity 1 29 0 2718 97 31 5 chr11 23586578 23586968 -125196504 + MLT2A1 LTR ERVL 1 400 -44 214 104 21 21 chr11 23586986 23587034 -125196438 + (TA)n Simple_repeat Simple_repeat 1 48 0 286 148 0 19 chr11 23587036 23587090 -125196382 + MLT2A1 LTR ERVL 399 451 -2 21 57 0 0 chr11 23587234 23587269 -125196203 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr11 23587590 23587613 -125195859 + AT_rich Low_complexity Low_complexity 1 23 0 2421 146 41 5 chr11 23587760 23588172 -125195300 + L1PA15 LINE L1 5736 6162 -3 407 188 0 0 chr11 23588183 23588268 -125195204 + L1M4 LINE L1 4436 4520 -1626 206 176 78 20 chr11 23589491 23589542 -125193930 - MIR3 SINE MIR -2 206 153 195 323 15 0 chr11 23591158 23591223 -125192249 - MIR SINE MIR 0 262 197 232 329 142 13 chr11 23591384 23591539 -125191933 - MIR SINE MIR -67 195 21 985 257 81 42 chr11 23591558 23591939 -125191533 - MSTD LTR MaLR 0 396 1 228 256 35 47 chr11 23591968 23592054 -125191418 - MIR3 SINE MIR -114 94 10 1690 104 0 4 chr11 23592706 23592937 -125190535 + AluSq SINE Alu 70 299 -14 26 0 0 0 chr11 23594126 23594152 -125189320 + AT_rich Low_complexity Low_complexity 1 26 0 1350 172 13 98 chr11 23594857 23595246 -125188226 - L1MC3 LINE L1 -15 7770 7415 1063 230 104 0 chr11 23595246 23595516 -125187956 + MLT2B2 LTR ERVL 216 513 -2 1423 259 28 13 chr11 23595516 23595976 -125187496 - L1M4 LINE L1 -1801 4345 3879 675 278 123 21 chr11 23595963 23596337 -125187135 - L1MCb LINE L1 -5534 511 100 * 1029 120 21 128 chr11 23596511 23596745 -125186727 + MER2 DNA MER2_type 2 210 -135 414 211 24 38 chr11 23599333 23599382 -125184090 - LTR43 LTR ERV1 -207 472 424 2463 61 3 13 chr11 23599382 23599695 -125183777 - AluY SINE Alu -1 310 1 414 211 24 38 chr11 23599695 23599794 -125183678 - LTR43 LTR ERV1 -255 424 179 332 363 21 26 chr11 23600844 23601037 -125182435 + MIR SINE MIR 65 256 -6 732 177 8 0 chr11 23601121 23601245 -125182227 + FLAM_C SINE Alu 1 125 -18 565 158 44 18 chr11 23601258 23601372 -125182100 - L1MD1 LINE L1 -5 6237 6121 369 244 13 0 chr11 23603109 23603187 -125180285 + Tigger5 DNA MER2_type 1 79 -2244 * 1526 145 4 0 chr11 23603180 23603422 -125180050 + Tigger5 DNA MER2_type 2081 2323 0 23 33 0 0 chr11 23604081 23604111 -125179361 + AT_rich Low_complexity Low_complexity 1 30 0 376 19 38 0 chr11 23604698 23604751 -125178721 + (TA)n Simple_repeat Simple_repeat 2 56 0 1869 141 3 17 chr11 23604751 23605048 -125178424 - AluSx SINE Alu -19 293 1 355 274 46 57 chr11 23605223 23605398 -125178074 + MIR SINE MIR 12 184 -78 1597 208 30 46 chr11 23605398 23605866 -125177606 + MER89 LTR ERV1 1 559 0 234 307 0 11 chr11 23606198 23606286 -125177186 - MER5B DNA MER1_type -70 108 22 202 219 16 62 chr11 23606233 23606297 -125177175 + MER5A DNA MER1_type 117 177 -12 * 190 273 15 30 chr11 23606313 23606379 -125177093 + MER5B DNA MER1_type 88 152 -26 2475 78 3 0 chr11 23608061 23608370 -125175102 + AluSq SINE Alu 3 312 -1 221 258 45 0 chr11 23608521 23608587 -125174885 + (TATATG)n Simple_repeat Simple_repeat 4 72 0 2608 39 3 0 chr11 23608768 23609076 -125174396 + AluY SINE Alu 1 309 -2 197 162 0 0 chr11 23609320 23609357 -125174115 - L2 LINE L2 0 3313 3277 198 330 28 38 chr11 23609499 23609605 -125173867 + L2 LINE L2 2422 2526 -788 11408 61 11 1 chr11 23609699 23611962 -125171510 - L1PA6 LINE L1 0 6154 3879 19070 123 14 12 chr11 23611962 23614939 -125168533 - L1PA6 LINE L1 -3152 2994 12 2298 92 0 7 chr11 23615213 23615506 -125167966 - AluY SINE Alu -20 291 1 1332 226 0 8 chr11 23616484 23616749 -125166723 - AluJo SINE Alu -49 263 1 186 43 0 0 chr11 23616802 23616825 -125166647 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 22921 176 26 29 chr11 23616825 23623291 -125160181 - L1PA11 LINE L1 -10 6479 2 2111 137 13 53 chr11 23623378 23623757 -125159715 + THE1B LTR MaLR 1 364 0 10805 112 20 4 chr11 23623757 23625312 -125158160 + THE1B-int LTR MaLR 1 1580 0 1980 165 14 30 chr11 23625312 23625682 -125157790 + THE1B LTR MaLR 1 364 0 314 238 40 10 chr11 23625813 23625914 -125157558 + L1ME LINE L1 5685 5788 -374 759 282 77 42 chr11 23625978 23626332 -125157140 - MER77 LTR ERV1 -6 599 177 199 419 67 0 chr11 23626749 23626854 -125156618 + L2 LINE L2 3116 3227 -45 859 298 34 4 chr11 23626897 23627135 -125156337 + MIR SINE MIR 13 257 -5 2142 118 7 3 chr11 23627578 23627883 -125155589 - AluSx SINE Alu -2 310 5 3187 152 48 12 chr11 23628687 23629265 -125154207 - LTR26 LTR ERV1 -4 599 1 876 190 23 56 chr11 23629516 23629732 -125153740 + LOR1a LTR ERV1 289 497 0 208 390 6 41 chr11 23629836 23630008 -125153464 + L2 LINE L2 2926 3091 -181 824 251 62 46 chr11 23630806 23631241 -125152231 - MER69 DNA AcHobo -3 2523 2082 2085 139 33 41 chr11 23631291 23631658 -125151814 - THE1B LTR MaLR 0 364 1 227 317 0 12 chr11 23632061 23632143 -125151329 - MER69 DNA AcHobo -2445 81 1 2112 119 3 7 chr11 23633225 23633528 -125149944 + AluSq SINE Alu 1 302 -11 2374 146 3 3 chr11 23633922 23634285 -125149187 - THE1B LTR MaLR -1 363 1 1657 74 0 31 chr11 23634290 23634519 -125148953 - THE1B-int LTR MaLR -5 1575 1354 287 125 0 18 chr11 23634520 23634576 -125148896 - MLT2A2 LTR ERVL 0 453 399 305 123 0 18 chr11 23634576 23634633 -125148839 + (CATA)n Simple_repeat Simple_repeat 1 56 0 475 146 11 0 chr11 23634653 23634742 -125148730 - HERVL LTR ERVL -69 5585 5496 220 211 28 0 chr11 23634742 23634813 -125148659 + (TA)n Simple_repeat Simple_repeat 1 73 0 617 121 0 52 chr11 23634853 23635026 -125148446 + (TA)n Simple_repeat Simple_repeat 2 165 0 2913 100 25 0 chr11 23635030 23635429 -125148043 - MLT2A2 LTR ERVL -44 409 1 3025 81 21 9 chr11 23635460 23635895 -125147577 - HERVL-A2 LTR ERVL 0 5654 5215 1582 128 104 35 chr11 23635925 23636214 -125147258 - THE1B LTR MaLR -55 309 1 8583 128 40 8 chr11 23636214 23637529 -125145943 - THE1B-int LTR MaLR -223 1357 1 2373 123 19 6 chr11 23637529 23637888 -125145584 - THE1B LTR MaLR 0 364 1 349 257 248 63 chr11 23638388 23638594 -125144878 - MIR SINE MIR -12 250 7 2148 229 68 31 chr11 23639399 23640049 -125143423 - MER67C LTR ERV1 0 710 37 292 258 0 16 chr11 23640394 23640456 -125143016 - LTR16A LTR ERVL -285 165 105 638 175 39 71 chr11 23640950 23641104 -125142368 + LTR34 LTR ERV1 3 151 -548 1758 179 57 30 chr11 23641104 23641553 -125141919 - LTR10B LTR ERV1 0 547 1 4799 235 5 14 chr11 23641553 23642606 -125140866 - LTR10B-int LTR ERV1 0 6649 5607 652 241 25 42 chr11 23643142 23643383 -125140089 + HAL1 LINE L1 1273 1509 -998 2327 261 88 37 chr11 23643530 23644547 -125138925 + Cheshire DNA MER1_type 4 1071 -1349 399 215 13 0 chr11 23644527 23644606 -125138866 + Cheshire DNA MER1_type 1270 1349 -1071 * 1914 234 35 26 chr11 23644674 23645069 -125138403 + Cheshire DNA MER1_type 1660 2063 -357 2286 72 24 3 chr11 23645069 23645362 -125138110 - AluY SINE Alu -12 299 1 1914 234 35 26 chr11 23645362 23645513 -125137959 + Cheshire DNA MER1_type 2063 2211 -209 2771 104 22 7 chr11 23645514 23645927 -125137545 - L1PA13 LINE L1 -2 6161 5743 15612 198 15 3 chr11 23646027 23649237 -125134235 - L1P LINE L1 -927 5219 1972 516 272 7 7 chr11 23649341 23649477 -125133995 - HERVI LTR ERV1 -3527 4258 4123 201 98 24 24 chr11 23649510 23649551 -125133921 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 6621 221 70 67 chr11 23649554 23653304 -125130168 - HERVI LTR ERV1 -3673 4112 5 1853 182 53 30 chr11 23653304 23653755 -125129717 - LTR10B LTR ERV1 0 547 1 * 2717 156 72 13 chr11 23653755 23654276 -125129196 + LTR34 LTR ERV1 148 699 0 409 300 118 68 chr11 23654589 23654809 -125128663 + MER115 DNA AcHobo 11 241 -452 24 0 0 0 chr11 23654823 23654847 -125128625 + AT_rich Low_complexity Low_complexity 1 24 0 3609 165 36 29 chr11 23655103 23655825 -125127647 + LTR8A LTR ERV1 1 727 0 340 215 0 0 chr11 23655854 23655919 -125127553 + L1PA15-16 LINE L1 2830 2894 -3955 2077 153 11 25 chr11 23655919 23656279 -125127193 - THE1A LTR MaLR 0 355 1 7079 117 20 2 chr11 23656279 23657284 -125126188 - THE1A-int LTR MaLR 0 1580 558 1430 240 2 16 chr11 23657283 23657720 -125125752 + L1P LINE L1 4906 5336 -810 * 291 130 0 0 chr11 23657898 23657944 -125125528 - MADE1 DNA Mariner 0 80 35 356 65 0 0 chr11 23658170 23658216 -125125256 + MADE1 DNA Mariner 35 80 0 23 0 0 0 chr11 23658365 23658388 -125125084 + AT_rich Low_complexity Low_complexity 1 23 0 1268 322 56 29 chr11 23659117 23659742 -125123730 - L2 LINE L2 -455 2859 2218 646 184 28 56 chr11 23659765 23659944 -125123528 + LTR37A LTR ERV1 28 201 -225 235 322 13 54 chr11 23660040 23660189 -125123283 + L2 LINE L2 3156 3298 -15 733 271 26 0 chr11 23660290 23660482 -125122990 + MIR SINE MIR 60 256 -6 186 43 0 0 chr11 23660821 23660844 -125122628 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 302 333 63 0 chr11 23661330 23661456 -125122016 + L2 LINE L2 2916 3049 -223 41848 41 22 2 chr11 23661706 23667726 -125115746 - L1PA3 LINE L1 -5 6150 5 328 296 107 6 chr11 23667747 23667906 -125115566 + MIR SINE MIR 24 198 -64 598 218 43 41 chr11 23668601 23668785 -125114687 + MIR SINE MIR 57 240 -22 4711 148 33 22 chr11 23668785 23669602 -125113870 + LTR1B LTR ERV1 1 826 0 221 188 40 50 chr11 23669930 23670031 -125113441 + T-rich Low_complexity Low_complexity 2 101 0 6168 185 15 27 chr11 23670823 23671370 -125112102 + L1PA16 LINE L1 3862 4414 -1752 216 0 0 0 chr11 23671370 23671394 -125112078 + (CA)n Simple_repeat Simple_repeat 1 24 0 6168 185 15 27 chr11 23671394 23673175 -125110297 + L1PA16 LINE L1 4414 6157 -9 1772 239 109 0 chr11 23673221 23673661 -125109811 + MLT1E2 LTR MaLR 137 624 -2 212 200 60 0 chr11 23673785 23673835 -125109637 + (TATATG)n Simple_repeat Simple_repeat 1 53 0 1989 140 31 0 chr11 23675227 23675519 -125107953 - AluSx SINE Alu -11 301 1 1802 135 40 3 chr11 23676444 23676740 -125106732 - AluSq SINE Alu -6 307 1 889 147 16 16 chr11 23677184 23677374 -125106098 - L1MA8 LINE L1 -4 6287 6098 959 198 11 0 chr11 23677374 23677556 -125105916 - Tigger3(Golem) DNA MER2_type -14 3015 2832 1511 194 28 0 chr11 23677558 23677841 -125105631 + AluJo SINE Alu 1 291 -21 815 82 11 1 chr11 23677841 23677967 -125105505 - L1MA1 LINE L1 -296 5859 5724 238 333 53 9 chr11 23678298 23678412 -125105060 - MER5A DNA MER1_type -10 179 61 * 330 297 20 20 chr11 23678312 23678413 -125105059 + MER5A DNA MER1_type 39 139 -50 315 0 0 0 chr11 23678859 23678894 -125104578 + (TA)n Simple_repeat Simple_repeat 1 35 0 225 0 0 0 chr11 23678907 23678932 -125104540 + (CA)n Simple_repeat Simple_repeat 2 26 0 2345 177 36 27 chr11 23678950 23679533 -125103939 + L1MB8 LINE L1 5590 6177 -1 2337 81 0 3 chr11 23679683 23679990 -125103482 - AluY SINE Alu -5 306 1 216 246 29 0 chr11 23680082 23680168 -125103304 + (TA)n Simple_repeat Simple_repeat 1 88 0 292 172 29 3 chr11 23680485 23680553 -125102919 - L1MB8 LINE L1 -199 5965 5894 218 215 0 15 chr11 23680804 23680869 -125102603 + (CATA)n Simple_repeat Simple_repeat 2 65 0 23 0 0 0 chr11 23681731 23681754 -125101718 + AT_rich Low_complexity Low_complexity 1 23 0 590 304 62 18 chr11 23682547 23682774 -125100698 + MIR SINE MIR 1 237 -25 474 250 50 0 chr11 23682949 23683069 -125100403 - MER94 DNA DNA -1 133 8 4176 184 23 15 chr11 23683326 23684186 -125099286 - L1 LINE L1 -1746 4400 3534 1321 158 0 5 chr11 23734231 23734434 -125049038 + AluSg/x SINE Alu 75 276 -36 279 0 0 0 chr11 23734439 23734470 -125049002 + (CAAA)n Simple_repeat Simple_repeat 1 31 0 635 246 29 79 chr11 23734470 23734710 -125048762 + L1MB8 LINE L1 1551 1778 -4606 643 271 86 37 chr11 23734864 23735669 -125047803 + L1MB8 LINE L1 1826 2615 -3767 * 2378 291 43 47 chr11 23735655 23736401 -125047071 + L1MB8 LINE L1 5672 6414 0 349 198 81 0 chr11 23736404 23736490 -125046982 - MER53 DNA DNA -1 188 96 307 178 9 122 chr11 23736523 23736630 -125046842 + MER53 DNA DNA 95 189 0 2794 92 76 35 chr11 23736938 23737157 -125046315 + MLT2A2 LTR ERVL 1 209 -244 4914 64 17 0 chr11 23737157 23737828 -125045644 + L1PA8 LINE L1 5512 6193 0 2794 92 76 35 chr11 23737828 23738004 -125045468 + MLT2A2 LTR ERVL 209 420 -33 369 0 0 0 chr11 23738004 23738045 -125045427 + (TA)n Simple_repeat Simple_repeat 1 41 0 2794 92 76 35 chr11 23738045 23738081 -125045391 + MLT2A2 LTR ERVL 420 453 0 268 291 0 38 chr11 23738505 23738584 -125044888 - MARNA DNA Mariner -416 170 95 192 364 124 23 chr11 23738687 23738816 -125044656 - L2 LINE L2 -15 3257 3116 643 266 54 5 chr11 23739363 23739547 -125043925 + MLT1F1 LTR MaLR 351 543 -24 646 219 55 125 chr11 23739566 23739877 -125043595 - MLT1A1 LTR MaLR -75 290 2 1904 151 66 26 chr11 23740023 23740373 -125043099 + THE1B LTR MaLR 1 364 0 577 241 85 11 chr11 23740449 23740719 -125042753 + L1MB8 LINE L1 5010 5299 -847 344 321 54 33 chr11 23740888 23741072 -125042400 + MLT1J2 LTR MaLR 263 450 0 529 305 44 0 chr11 23741578 23741781 -125041691 - MIR SINE MIR -10 252 41 252 336 55 16 chr11 23743443 23743571 -125039901 + MIR SINE MIR 57 189 -73 21 0 0 0 chr11 23743622 23743643 -125039829 + AT_rich Low_complexity Low_complexity 1 21 0 530 263 114 31 chr11 23743825 23744053 -125039419 - MIR SINE MIR -1 261 15 189 107 0 0 chr11 23744721 23744749 -125038723 + (TTCC)n Simple_repeat Simple_repeat 3 30 0 278 391 45 11 chr11 23745075 23745254 -125038218 - MIR SINE MIR -76 186 2 2558 104 8 8 chr11 23745669 23746043 -125037429 - THE1C LTR MaLR -1 374 1 1420 235 33 9 chr11 23746534 23746964 -125036508 + L1MB8 LINE L1 5692 6131 -47 180 0 0 0 chr11 23747466 23747486 -125035986 + (T)n Simple_repeat Simple_repeat 1 20 0 391 316 8 17 chr11 23747840 23747957 -125035515 - L2 LINE L2 -13 3300 3185 1491 299 169 15 chr11 23748116 23748992 -125034480 - L2 LINE L2 -33 3280 2243 2087 130 3 3 chr11 23749010 23749310 -125034162 + AluSx SINE Alu 2 301 -11 911 270 51 52 chr11 23749315 23749898 -125033574 - L2 LINE L2 -158 3155 2518 14810 27 1 1 chr11 23749991 23752521 -125030951 - L1PA3 LINE L1 0 6155 3627 232 324 103 55 chr11 23753267 23753412 -125030060 + L2 LINE L2 2581 2732 -582 410 328 30 10 chr11 23753435 23753633 -125029839 - MLT1K LTR MaLR -23 565 364 183 129 0 0 chr11 23754852 23754883 -125028589 + (TATATG)n Simple_repeat Simple_repeat 6 36 0 5217 169 42 8 chr11 23755453 23756505 -125026967 + Tigger3b DNA MER2_type 3 1090 -141 315 50 0 0 chr11 23756543 23756583 -125026889 - AluY SINE Alu -196 105 66 40993 33 21 3 chr11 23756602 23762638 -125020834 - L1PA2 LINE L1 0 6155 3 689 226 0 0 chr11 23762654 23762791 -125020681 + Tigger3b DNA MER2_type 1095 1231 0 303 28 0 0 chr11 23762794 23762830 -125020642 + (CA)n Simple_repeat Simple_repeat 2 37 0 349 224 112 15 chr11 23762878 23763012 -125020460 + MLT1J2 LTR MaLR 70 216 -234 3288 200 23 7 chr11 23763135 23763835 -125019637 - MER50 LTR ERV1 -23 711 1 425 324 51 5 chr11 23764123 23764321 -125019151 - MIR SINE MIR -17 245 34 661 332 80 43 chr11 23764660 23765220 -125018252 + L2 LINE L2 2730 3313 0 2443 80 23 0 chr11 23765260 23765561 -125017911 + AluSq SINE Alu 1 308 -5 358 323 89 6 chr11 23765581 23765739 -125017733 + MIR SINE MIR 5 175 -87 1071 270 0 0 chr11 23766648 23766907 -125016565 + MER77 LTR ERV1 344 602 -3 328 245 0 13 chr11 23767022 23767173 -125016299 + (TG)n Simple_repeat Simple_repeat 1 149 0 324 303 69 41 chr11 23767184 23767382 -125016090 - L2 LINE L2 -307 2965 2761 303 246 73 36 chr11 23767428 23767538 -125015934 + L1ME LINE L1 5727 5840 -281 294 164 0 0 chr11 23767627 23767682 -125015790 + (TA)n Simple_repeat Simple_repeat 2 56 0 27 49 0 0 chr11 23767842 23767883 -125015589 + AT_rich Low_complexity Low_complexity 1 41 0 362 319 186 49 chr11 23767983 23768466 -125015006 - L2 LINE L2 -782 2532 2116 2126 57 0 8 chr11 23768466 23768729 -125014743 - AluY SINE Alu -10 301 41 362 319 186 49 chr11 23768729 23769036 -125014436 - L2 LINE L2 -1198 2116 1634 659 229 0 0 chr11 23769646 23769768 -125013704 - AluSg/x SINE Alu -27 283 162 1709 179 6 22 chr11 23769803 23770115 -125013357 - AluJb SINE Alu -5 307 1 24 32 0 0 chr11 23770124 23770155 -125013317 + AT_rich Low_complexity Low_complexity 1 31 0 199 377 29 43 chr11 23770513 23770651 -125012821 - MIR SINE MIR -112 150 15 180 361 33 16 chr11 23770819 23770880 -125012592 + L3b LINE CR1 1504 1565 -18 1574 232 183 35 chr11 23771430 23771811 -125011661 - MLT1E1 LTR MaLR 0 654 331 1498 138 30 0 chr11 23771811 23772079 -125011393 - L1MA4 LINE L1 -5 6295 6020 1574 232 183 35 chr11 23772079 23772267 -125011205 - MLT1E1 LTR MaLR -323 331 1 320 209 91 0 chr11 23773672 23773782 -125009690 - Charlie5 DNA MER1_type -27 2585 2466 1005 195 0 15 chr11 23774088 23774293 -125009179 + BaEV-int LTR ERV1 5290 5491 -1158 22 56 0 0 chr11 23774753 23774789 -125008683 + AT_rich Low_complexity Low_complexity 1 36 0 10444 24 1 1 chr11 23774790 23776073 -125007399 - L1P LINE L1 -1168 4978 3696 332 287 0 21 chr11 23776801 23776895 -125006577 - MLT1E2 LTR MaLR -92 532 441 713 285 61 26 chr11 23777094 23777415 -125006057 - MLT1E2 LTR MaLR -174 452 184 745 208 0 0 chr11 23777415 23777545 -125005927 + FLAM_A SINE Alu 1 130 -12 417 239 190 6 chr11 23777554 23777717 -125005755 - MLT1E2 LTR MaLR -460 194 2 3785 148 21 28 chr11 23778318 23779034 -125004438 + MER50 LTR ERV1 1 711 -23 23 0 0 0 chr11 23779227 23779250 -125004222 + AT_rich Low_complexity Low_complexity 1 23 0 38540 71 4 5 chr11 23779438 23785579 -124997893 + L1PA5 LINE L1 11 6148 -6 30 0 0 0 chr11 23785720 23785750 -124997722 + AT_rich Low_complexity Low_complexity 1 30 0 799 219 185 24 chr11 23785781 23786078 -124997394 + L1MD2 LINE L1 6005 6349 -10 440 165 0 47 chr11 23786086 23786171 -124997301 - FRAM SINE Alu -22 154 74 1665 74 4 4 chr11 23786271 23786500 -124996972 - L1PA6 LINE L1 -21 6133 5905 2352 160 10 0 chr11 23786999 23787398 -124996074 - MER57A LTR ERV1 0 403 1 421 265 23 15 chr11 23788069 23788201 -124995271 + LTR68 LTR ERV1 302 434 -306 531 172 0 0 chr11 23788257 23788350 -124995122 - L1MC/D LINE L1 -723 5636 5544 485 325 164 3 chr11 23788360 23788714 -124994758 + MER69 DNA AcHobo 136 546 -680 999 223 78 35 chr11 23788746 23789235 -124994237 + MER69 DNA AcHobo 2017 2526 0 3383 58 4 13 chr11 23789481 23789933 -124993539 - LTR7 LTR ERV1 -2 448 1 2327 82 48 13 chr11 23789933 23790310 -124993162 - HERVH LTR ERV1 0 7713 7324 1210 148 18 5 chr11 23790310 23790527 -124992945 - HERVH LTR ERV1 -1894 5819 5600 3936 145 21 3 chr11 23790528 23791178 -124992294 - HERVH LTR ERV1 -2564 5149 4488 3166 110 6 6 chr11 23791180 23791682 -124991790 - HERVH LTR ERV1 -3720 3993 3492 875 128 20 0 chr11 23791672 23791820 -124991652 - HERVH LTR ERV1 -4423 3290 3140 * 18492 104 19 12 chr11 23791799 23794775 -124988697 - HERVH LTR ERV1 -4718 2995 1 3399 58 4 13 chr11 23794777 23795229 -124988243 - LTR7 LTR ERV1 -2 448 1 286 307 57 0 chr11 23795932 23796020 -124987452 - L2 LINE L2 0 3272 3180 228 266 266 0 chr11 23796355 23796468 -124987004 - MLT1H LTR MaLR -32 517 375 573 311 129 15 chr11 23796723 23796987 -124986485 + L2 LINE L2 1382 1675 -1639 222 191 0 0 chr11 23797417 23797464 -124986008 + (TG)n Simple_repeat Simple_repeat 2 48 0 264 191 17 104 chr11 23797512 23797627 -124985845 + L1ME4a LINE L1 5964 6068 -53 431 326 125 8 chr11 23797736 23798080 -124985392 + MLT1F LTR MaLR 1 346 -196 611 339 39 9 chr11 23798157 23798390 -124985082 + MIR SINE MIR 2 241 -21 213 39 0 0 chr11 23798974 23799000 -124984472 + (T)n Simple_repeat Simple_repeat 1 26 0 7744 20 0 2 chr11 23799025 23800339 -124983133 - L1PA3 LINE L1 -1 6154 4842 387 0 0 0 chr11 23800889 23800932 -124982540 + (CA)n Simple_repeat Simple_repeat 1 43 0 295 116 58 14 chr11 23801066 23801135 -124982337 - MER116 DNA Mariner -3 77 6 21 36 0 0 chr11 23802243 23802271 -124981201 + AT_rich Low_complexity Low_complexity 1 28 0 570 197 68 83 chr11 23802821 23803085 -124980387 - LTR37B LTR ERV1 -55 413 154 289 292 0 0 chr11 23803228 23803293 -124980179 + L2 LINE L2 3235 3299 -14 210 71 0 0 chr11 23803297 23803325 -124980147 + (TGGA)n Simple_repeat Simple_repeat 4 31 0 2183 156 5 24 chr11 23803415 23803786 -124979686 - THE1B LTR MaLR 0 364 1 11142 101 15 9 chr11 23803786 23805356 -124978116 - THE1B-int LTR MaLR 0 1580 1 614 138 0 0 chr11 23805376 23805463 -124978009 - THE1B LTR MaLR -277 87 1 673 181 15 0 chr11 23805650 23805783 -124977689 - L1MA9 LINE L1 -145 6167 6033 824 209 25 0 chr11 23805873 23806031 -124977441 + FAM SINE Alu 1 162 -13 286 319 60 17 chr11 23806258 23806374 -124977098 + L2 LINE L2 3187 3307 -6 239 265 15 15 chr11 23807325 23807393 -124976079 - L2 LINE L2 -84 3229 3162 4300 182 107 163 chr11 23807502 23809362 -124974110 + MER52A LTR ERV1 1 1754 -1 271 190 266 38 chr11 23809458 23809537 -124973935 + FRAM SINE Alu 1 91 -75 28 48 0 0 chr11 23811829 23811871 -124971601 + AT_rich Low_complexity Low_complexity 1 42 0 231 125 0 0 chr11 23812233 23812273 -124971199 + (TG)n Simple_repeat Simple_repeat 2 41 0 185 197 16 0 chr11 23813422 23813483 -124969989 + (TA)n Simple_repeat Simple_repeat 2 63 0 3195 158 8 8 chr11 23813937 23814464 -124969008 - MER1A DNA MER1_type 0 527 1 304 283 64 35 chr11 23814621 23814794 -124968678 + MIR SINE MIR 58 235 -27 772 148 59 0 chr11 23815833 23815968 -124967504 - L1MA7 LINE L1 -365 5926 5784 325 193 0 24 chr11 23815968 23816034 -124967438 + L1MA7 LINE L1 6209 6289 -2 245 309 121 34 chr11 23816181 23816446 -124967026 + L1MCc LINE L1 112 399 -6024 964 243 57 7 chr11 23816496 23816776 -124966696 - MER58B DNA MER1_type -42 299 6 1399 245 107 55 chr11 23816842 23817384 -124966088 - MLT1E2 LTR MaLR -5 621 52 188 276 52 17 chr11 23818158 23818216 -124965256 + MIR SINE MIR 82 141 -67 1493 91 0 0 chr11 23818769 23818967 -124964505 + AluY SINE Alu 51 248 -63 223 258 0 15 chr11 23819666 23819732 -124963740 + (TATATG)n Simple_repeat Simple_repeat 4 68 0 2239 253 61 39 chr11 23820376 23820594 -124962878 + L1ME2 LINE L1 4524 4736 -1428 1607 163 0 8 chr11 23820594 23820852 -124962620 + AluJb SINE Alu 1 256 -56 2239 253 61 39 chr11 23820852 23822220 -124961252 + L1ME2 LINE L1 4736 6145 -19 20326 52 12 2 chr11 23822972 23826335 -124957137 + L1PA5 LINE L1 2780 6152 -2 25 0 0 0 chr11 23827308 23827333 -124956139 + AT_rich Low_complexity Low_complexity 1 25 0 346 275 55 77 chr11 23827837 23828019 -124955453 - MIR SINE MIR -64 198 21 1832 153 7 7 chr11 23828348 23828629 -124954843 - AluJb SINE Alu -31 281 1 321 331 97 26 chr11 23829272 23829426 -124954046 - L2 LINE L2 -1 3271 3107 440 147 13 0 chr11 23830136 23830211 -124953261 - MER4D LTR ERV1 0 903 828 1613 186 3 59 chr11 23830460 23830814 -124952658 - MER4E LTR ERV1 -79 700 367 23 0 0 0 chr11 23830861 23830884 -124952588 + AT_rich Low_complexity Low_complexity 1 23 0 478 229 0 0 chr11 23831538 23831621 -124951851 + MER2 DNA MER2_type 2 84 -261 * 582 145 23 100 chr11 23831615 23831815 -124951657 - MER67C LTR ERV1 -357 157 72 388 279 115 44 chr11 23831938 23832211 -124951261 + MLT1H LTR MaLR 189 547 -2 1127 230 111 47 chr11 23832515 23833053 -124950419 + LTR24B LTR ERV1 12 569 -7 220 200 20 0 chr11 23834388 23834438 -124949034 + (CA)n Simple_repeat Simple_repeat 1 51 0 280 299 79 85 chr11 23834507 23834684 -124948788 + MIR SINE MIR 71 246 -16 344 356 82 0 chr11 23834745 23834891 -124948581 - L2 LINE L2 0 3272 3115 218 279 73 44 chr11 23835695 23835763 -124947709 - MIR SINE MIR -171 91 22 894 187 69 29 chr11 23836041 23836287 -124947185 - LTR48B LTR ERV1 -5 639 384 1193 206 56 12 chr11 23836507 23836759 -124946713 - LTR48B LTR ERV1 -379 265 3 424 215 21 21 chr11 23836769 23836862 -124946610 + MIR SINE MIR 119 211 -51 2266 145 43 43 chr11 23836914 23837334 -124946138 + LTR49 LTR ERV1 7 426 -169 3162 183 45 16 chr11 23837334 23837961 -124945511 - MER39B LTR ERV1 0 653 9 649 183 38 12 chr11 23837960 23838137 -124945335 + LTR49 LTR ERV1 473 593 -2 * 3076 241 58 28 chr11 23838143 23839693 -124943779 - L1MC/D LINE L1 -693 5926 4336 658 254 35 45 chr11 23839718 23839919 -124943553 - MLT1D LTR MaLR -302 203 5 1112 232 43 55 chr11 23839934 23840255 -124943217 - L1MDa LINE L1 -3654 2752 2429 408 88 0 0 chr11 23840255 23840312 -124943160 + (TG)n Simple_repeat Simple_repeat 2 58 0 1112 232 43 55 chr11 23840312 23840682 -124942790 - L1MDa LINE L1 -3977 2429 2094 259 286 50 8 chr11 23840745 23840864 -124942608 + L1MDa LINE L1 2042 2165 -4375 294 219 73 0 chr11 23840878 23840960 -124942512 - L1MDa LINE L1 -4530 1876 1789 * 328 314 36 22 chr11 23840942 23841079 -124942393 - L1MDa LINE L1 -5923 486 348 719 290 40 28 chr11 23841119 23841371 -124942101 - L1MDa LINE L1 -6147 262 8 204 40 0 0 chr11 23841427 23841452 -124942020 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chr11 23842171 23842193 -124941279 + AT_rich Low_complexity Low_complexity 1 22 0 2016 127 14 3 chr11 23843375 23843659 -124939813 - AluJb SINE Alu -25 287 1 204 125 0 0 chr11 23843825 23843857 -124939615 + (TC)n Simple_repeat Simple_repeat 1 32 0 270 0 0 0 chr11 23843857 23843887 -124939585 + (TG)n Simple_repeat Simple_repeat 1 30 0 22 35 0 0 chr11 23843938 23843967 -124939505 + AT_rich Low_complexity Low_complexity 1 29 0 1182 236 30 43 chr11 23844248 23844616 -124938856 - MLT1A1 LTR MaLR -2 363 1 36 40 0 0 chr11 23844988 23845038 -124938434 + AT_rich Low_complexity Low_complexity 1 50 0 1779 176 3 0 chr11 23845057 23845346 -124938126 - AluSx SINE Alu -22 290 1 1231 224 82 45 chr11 23845867 23846247 -124937225 - MSTD LTR MaLR 0 396 3 858 301 37 71 chr11 23847716 23847929 -124935543 - MER115 DNA AcHobo 0 693 501 1975 125 20 10 chr11 23847929 23848224 -124935248 + AluSg SINE Alu 1 298 -12 858 301 37 71 chr11 23848224 23848446 -124935026 - MER115 DNA AcHobo -192 501 273 837 250 26 44 chr11 23848670 23848898 -124934574 + MIR SINE MIR 34 257 -5 241 185 19 19 chr11 23850634 23850688 -124932784 + CT-rich Low_complexity Low_complexity 1 54 0 21 36 0 0 chr11 23850693 23850721 -124932751 + AT_rich Low_complexity Low_complexity 1 28 0 497 322 53 33 chr11 23851056 23851301 -124932171 - MLT1J2 LTR MaLR -145 305 56 2263 152 28 30 chr11 23851512 23851939 -124931533 - MSTB LTR MaLR 0 426 1 292 346 75 9 chr11 23852341 23852448 -124931024 + MER91A DNA MER1_type 45 158 -38 243 375 11 0 chr11 23852646 23852734 -124930738 + MIR3 SINE MIR 113 201 -7 2355 155 18 56 chr11 23852842 23853357 -124930115 - L1MA4 LINE L1 -6 6294 5800 811 175 0 22 chr11 23853411 23853548 -124929924 + FRAM SINE Alu 16 149 -27 8821 205 30 12 chr11 23853558 23854225 -124929247 - L1MA4 LINE L1 -1289 4857 4203 237 65 0 0 chr11 23854225 23854256 -124929216 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 8821 205 30 12 chr11 23854256 23855273 -124928199 - L1MA4 LINE L1 -1943 4203 3127 2474 45 13 10 chr11 23855273 23855581 -124927891 - AluY SINE Alu -2 309 1 8821 205 30 12 chr11 23855581 23855952 -124927520 - L1MA4 LINE L1 -3019 3127 2764 22 94 0 0 chr11 23856029 23856093 -124927379 + AT_rich Low_complexity Low_complexity 1 64 0 2073 142 3 0 chr11 23856294 23856604 -124926868 + AluSx SINE Alu 1 311 -1 22 0 0 0 chr11 23856965 23856987 -124926485 + AT_rich Low_complexity Low_complexity 1 22 0 413 205 36 0 chr11 23857234 23857346 -124926126 + L1MA7 LINE L1 6174 6289 -2 26 74 0 0 chr11 23857347 23857401 -124926071 + AT_rich Low_complexity Low_complexity 1 54 0 529 355 14 5 chr11 23857606 23857826 -124925646 + MIR SINE MIR 31 252 -10 183 324 102 19 chr11 23857863 23857971 -124925501 - L2 LINE L2 -33 3280 3164 301 234 130 0 chr11 23858543 23858620 -124924852 - HERV16 LTR ERVL -4287 709 623 24 0 0 0 chr11 23858951 23858975 -124924497 + AT_rich Low_complexity Low_complexity 1 24 0 27 62 0 0 chr11 23859228 23859276 -124924196 + AT_rich Low_complexity Low_complexity 1 48 0 197 205 0 26 chr11 23859872 23859911 -124923561 - L2 LINE L2 -15 3298 3261 726 205 12 6 chr11 23859956 23860122 -124923350 + L1MA4 LINE L1 4238 4404 -1742 678 101 0 0 chr11 23860128 23860237 -124923235 - L1P LINE L1 -3680 2466 2358 * 5154 167 12 14 chr11 23860233 23861235 -124922237 + L1MA4 LINE L1 5295 6300 0 5006 242 26 14 chr11 23861413 23862850 -124920622 - L1 LINE L1 -2261 3885 2431 765 220 57 0 chr11 23862845 23863004 -124920468 + L1MA9 LINE L1 5914 6081 -231 * 406 186 13 1 chr11 23863009 23863107 -124920365 + L1MA9 LINE L1 6183 6290 -9 271 307 72 48 chr11 23863153 23863319 -124920153 - MIR SINE MIR -46 216 47 325 151 118 32 chr11 23863443 23863536 -124919936 - MIR SINE MIR -65 197 97 318 253 127 40 chr11 23863646 23863796 -124919676 + MLT1C LTR MaLR 66 228 -239 421 296 37 7 chr11 23863797 23863932 -124919540 + MIR SINE MIR 17 155 -107 1008 192 0 13 chr11 23864583 23864817 -124918655 + L1MA4 LINE L1 6069 6299 -1 7344 40 0 0 chr11 23864871 23865936 -124917536 - L1PA5 LINE L1 0 6154 5089 8616 34 0 0 chr11 23865936 23866966 -124916506 + L1PA5 LINE L1 4071 5100 -1046 984 363 76 32 chr11 23867362 23867614 -124915858 - MER115 DNA AcHobo -1 692 453 2219 118 0 6 chr11 23867614 23867927 -124915545 - AluY SINE Alu 0 311 1 984 363 76 32 chr11 23867927 23868302 -124915170 - MER115 DNA AcHobo -240 453 37 23 0 0 0 chr11 23868997 23869020 -124914452 + AT_rich Low_complexity Low_complexity 1 23 0 5264 82 54 5 chr11 23869696 23870440 -124913032 - LTR17 LTR ERV1 0 780 1 21 36 0 0 chr11 23870474 23870502 -124912970 + AT_rich Low_complexity Low_complexity 1 28 0 426 329 41 0 chr11 23870674 23870820 -124912652 + MIR SINE MIR 111 262 0 515 246 108 11 chr11 23872875 23873135 -124910337 + MER69 DNA AcHobo 2090 2374 -152 26 50 0 0 chr11 23873135 23873175 -124910297 + AT_rich Low_complexity Low_complexity 1 40 0 70 48 0 0 chr11 23873210 23873315 -124910157 + AT_rich Low_complexity Low_complexity 1 105 0 332 211 32 21 chr11 23873325 23873420 -124910052 + MER69 DNA AcHobo 2414 2509 -17 328 265 125 52 chr11 23873604 23873740 -124909732 - MIR SINE MIR -83 179 34 22 0 0 0 chr11 23873965 23873987 -124909485 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr11 23874062 23874090 -124909382 + AT_rich Low_complexity Low_complexity 1 28 0 394 267 42 0 chr11 23874117 23874282 -124909190 + L1M4 LINE L1 2814 2985 -3161 3138 251 43 13 chr11 23874297 23875398 -124908074 + L1M4 LINE L1 2446 3579 -2567 1863 144 29 16 chr11 23875398 23875704 -124907768 + AluSx SINE Alu 1 310 -2 36 87 0 0 chr11 23876014 23876106 -124907366 + AT_rich Low_complexity Low_complexity 1 92 0 232 338 58 45 chr11 23876277 23876431 -124907041 - L2 LINE L2 -1 3271 3116 344 242 0 22 chr11 23876543 23876634 -124906838 - MER117 DNA MER1_type -102 95 7 216 255 0 0 chr11 23877496 23877547 -124905925 + L2 LINE L2 3263 3313 0 376 290 16 75 chr11 23877711 23877897 -124905575 - MER5B DNA MER1_type 0 178 4 207 69 0 0 chr11 23878886 23878915 -124904557 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2168 96 0 3 chr11 23878997 23879321 -124904151 + AluSx SINE Alu 1 323 0 242 294 59 39 chr11 23879546 23879648 -124903824 - MLT2E LTR ERVL -490 138 35 1600 206 18 97 chr11 23879973 23880478 -124902994 - MLT1C LTR MaLR -2 465 1 23 86 0 0 chr11 23881187 23881245 -124902227 + AT_rich Low_complexity Low_complexity 1 58 0 199 324 14 0 chr11 23881545 23881616 -124901856 - MIR SINE MIR -2 260 189 203 263 70 0 chr11 23881644 23881701 -124901771 + MIR SINE MIR 81 141 -67 268 286 205 18 chr11 23882363 23882475 -124900997 - MIR SINE MIR -112 150 18 235 321 9 0 chr11 23882625 23882737 -124900735 + (TA)n Simple_repeat Simple_repeat 1 113 0 304 278 10 31 chr11 23882854 23882951 -124900521 + MIR SINE MIR 161 255 -7 21 0 0 0 chr11 23883999 23884020 -124899452 + AT_rich Low_complexity Low_complexity 1 21 0 2634 24 0 0 chr11 23884509 23884805 -124898667 + AluY SINE Alu 1 296 -15 2328 102 0 3 chr11 23886406 23886719 -124896753 + AluSx SINE Alu 1 312 0 1902 236 106 25 chr11 23887776 23888332 -124895140 + MLT1E3 LTR MaLR 5 605 -19 201 351 75 0 chr11 23888425 23888519 -124894953 + MIR SINE MIR 106 206 -56 986 293 0 12 chr11 23890220 23890476 -124892996 + HUERS-P1 LTR ERV1 5966 6218 -45 925 193 80 72 chr11 23890499 23890763 -124892709 + LTR8A LTR ERV1 1 266 -461 5767 116 19 9 chr11 23890793 23891965 -124891507 + L1PA14 LINE L1 4975 6161 0 1539 172 94 50 chr11 23891999 23892383 -124891089 + LTR8A LTR ERV1 274 674 -53 23 68 0 0 chr11 23893046 23893090 -124890382 + AT_rich Low_complexity Low_complexity 1 44 0 27 73 0 0 chr11 23893383 23893438 -124890034 + AT_rich Low_complexity Low_complexity 1 55 0 183 42 0 0 chr11 23893750 23893774 -124889698 + (TTGG)n Simple_repeat Simple_repeat 4 27 0 1993 100 6 70 chr11 23893786 23894115 -124889357 - AluSg SINE Alu -2 308 1 587 300 112 9 chr11 23894220 23894453 -124889019 + MIR SINE MIR 6 262 0 399 268 39 78 chr11 23894470 23894828 -124888644 - HAL1 LINE L1 -922 1585 1242 23 68 0 0 chr11 23896098 23896142 -124887330 + AT_rich Low_complexity Low_complexity 1 44 0 30 59 0 0 chr11 23896267 23896318 -124887154 + AT_rich Low_complexity Low_complexity 1 51 0 2602 174 17 14 chr11 23896318 23896836 -124886636 - L1 LINE L1 -1541 4605 4086 * 4477 184 12 14 chr11 23896833 23897493 -124885979 + L1PB4 LINE L1 4641 5301 -855 351 0 0 0 chr11 23897493 23897532 -124885940 + (CA)n Simple_repeat Simple_repeat 2 40 0 4477 184 12 14 chr11 23897532 23897680 -124885792 + L1PB4 LINE L1 5301 5448 -708 2499 146 26 5 chr11 23897680 23898099 -124885373 - MSTA LTR MaLR 0 428 1 4477 184 12 14 chr11 23898099 23898801 -124884671 + L1PB4 LINE L1 5448 6148 -8 4304 230 14 27 chr11 23950084 23951227 -124832245 - L1P LINE L1 -3284 2862 1735 182 62 31 0 chr11 23953363 23953395 -124830077 + (CCCCCT)n Simple_repeat Simple_repeat 1 33 0 207 289 53 0 chr11 23953771 23953847 -124829625 - MIR SINE MIR -64 198 119 232 267 17 0 chr11 23953873 23953993 -124829479 + (TA)n Simple_repeat Simple_repeat 1 122 0 627 148 0 86 chr11 23954370 23954498 -124828974 - L1PA8A LINE L1 0 6131 6015 364 111 0 0 chr11 23954498 23954552 -124828920 - L1PA8 LINE L1 -119 6053 6000 258 342 84 19 chr11 23954831 23954986 -124828486 - MIR3 SINE MIR -12 196 32 624 263 84 0 chr11 23955220 23955399 -124828073 + MLT1L LTR MaLR 370 563 -52 3480 199 63 47 chr11 23955547 23956784 -124826688 - L1MD1 LINE L1 -2 6634 5378 340 226 129 0 chr11 23957130 23957223 -124826249 - L1MD1 LINE L1 -1217 5323 5219 286 285 79 6 chr11 23957224 23957389 -124826083 + L1M4 LINE L1 4652 4828 -1318 453 194 86 0 chr11 23957404 23957543 -124825929 - L1MD1 LINE L1 -4816 1724 1574 21098 116 23 4 chr11 23957679 23959963 -124823509 - L1PA8A LINE L1 -148 5983 3592 366 23 0 0 chr11 23959963 23960006 -124823466 + (TG)n Simple_repeat Simple_repeat 1 43 0 21098 116 23 4 chr11 23960006 23961678 -124821794 - L1PA8A LINE L1 -2539 3592 1952 1855 172 7 0 chr11 23962221 23962518 -124820954 - AluSx SINE Alu -10 302 4 216 0 0 0 chr11 23962575 23962599 -124820873 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1919 151 0 3 chr11 23963245 23963536 -124819936 - AluSx SINE Alu -11 301 12 4424 41 0 0 chr11 23963552 23964086 -124819386 + L1PA4 LINE L1 5621 6154 -1 22 0 0 0 chr11 23964101 23964123 -124819349 + AT_rich Low_complexity Low_complexity 1 22 0 229 233 0 33 chr11 23965000 23965090 -124818382 - MER103 DNA DNA -75 91 5 739 295 124 7 chr11 23965299 23965597 -124817875 + LTR16C LTR ERVL 159 491 0 298 244 128 1 chr11 23965847 23965984 -124817488 - MER67D LTR ERV1 -29 485 306 1469 172 6 83 chr11 23966031 23966368 -124817104 - MER67D LTR ERV1 -203 311 1 186 356 106 0 chr11 23966459 23966591 -124816881 + MIR SINE MIR 73 218 -44 1191 214 67 36 chr11 23966672 23967003 -124816469 - MLT1B LTR MaLR -49 341 1 228 111 0 0 chr11 23968212 23968248 -124815224 + (CA)n Simple_repeat Simple_repeat 2 37 0 189 263 70 79 chr11 23968300 23968414 -124815058 - MIR SINE MIR -37 225 113 309 312 28 35 chr11 23968600 23968741 -124814731 + MIR SINE MIR 116 255 -7 329 117 17 0 chr11 23970084 23970144 -124813328 + CT-rich Low_complexity Low_complexity 1 61 0 3882 210 46 36 chr11 23970289 23971376 -124812096 - L1MC1 LINE L1 -304 6309 5185 477 0 0 0 chr11 23971376 23971429 -124812043 + (TTA)n Simple_repeat Simple_repeat 2 54 0 3882 210 46 36 chr11 23971429 23972270 -124811202 - L1MC1 LINE L1 -1428 5185 4354 * 5366 183 47 61 chr11 23972266 23973553 -124809919 - L1MC1 LINE L1 -5154 1272 5 672 359 47 10 chr11 23973609 23973910 -124809562 - L1MDb LINE L1 -6086 323 12 228 246 49 41 chr11 23974328 23974450 -124809022 + L1ME4a LINE L1 5959 6081 -40 466 309 50 42 chr11 23974550 23974809 -124808663 + MIR SINE MIR 2 262 0 267 386 68 14 chr11 23975676 23975883 -124807589 + MIR SINE MIR 23 240 -22 275 237 11 0 chr11 23975925 23976018 -124807454 + (TA)n Simple_repeat Simple_repeat 2 95 0 320 344 62 26 chr11 23976916 23977111 -124806361 + MIR SINE MIR 11 212 -50 1234 96 6 6 chr11 23977189 23977367 -124806105 + L1MA1 LINE L1 6121 6298 -4 765 268 22 84 chr11 23977396 23977897 -124805575 + HAL1 LINE L1 1995 2464 -43 1150 204 35 0 chr11 23977897 23978127 -124805345 - L1MB1 LINE L1 -1 6167 5930 22 35 0 0 chr11 23978565 23978594 -124804878 + AT_rich Low_complexity Low_complexity 1 29 0 332 263 263 0 chr11 23979273 23979410 -124804062 - MIR SINE MIR -49 213 41 699 144 44 66 chr11 23979787 23979968 -124803504 + pTR5 LTR ERV1 743 919 -1519 461 16 2 0 chr11 23980183 23980246 -124803226 + pTR5 LTR ERV1 334 2438 0 311 257 129 0 chr11 23980246 23980347 -124803125 - L2 LINE L2 -796 2518 2405 582 204 59 8 chr11 23980485 23980657 -124802815 - L1M4 LINE L1 -2623 3523 3346 1835 297 89 27 chr11 23981330 23982350 -124801122 + L2 LINE L2 2218 3312 -1 22 0 0 0 chr11 23982851 23982873 -124800599 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr11 23983253 23983289 -124800183 + GC_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr11 23985183 23985213 -124798259 + AT_rich Low_complexity Low_complexity 1 30 0 204 125 0 0 chr11 23985468 23985500 -124797972 + (TG)n Simple_repeat Simple_repeat 1 32 0 180 339 113 57 chr11 23985563 23985740 -124797732 + MIR3 SINE MIR 19 205 -3 2073 125 3 7 chr11 23986775 23987079 -124796393 + AluSx SINE Alu 1 303 -9 1903 173 47 9 chr11 23989598 23990050 -124793422 - L1MA8 LINE L1 -4 7706 7238 1580 203 3 19 chr11 23990070 23990103 -124793369 - AluJo SINE Alu -6 306 274 2051 121 63 30 chr11 23990103 23990466 -124793006 + THE1C LTR MaLR 1 375 0 1580 203 3 19 chr11 23990466 23990743 -124792729 - AluJo SINE Alu -38 274 1 11221 190 45 10 chr11 23990747 23993717 -124789755 - L1MA8 LINE L1 -467 7243 4171 601 245 50 6 chr11 23993722 23993881 -124789591 + L1M4 LINE L1 2607 2772 -3374 2471 235 47 3 chr11 23993895 23994605 -124788867 + L1M4 LINE L1 3284 4024 -2122 21 0 0 0 chr11 23994605 23994626 -124788846 + AT_rich Low_complexity Low_complexity 1 21 0 311 43 0 22 chr11 23994759 23994805 -124788667 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 9623 30 16 0 chr11 23994805 23996706 -124786766 - L1PA3 LINE L1 -24 6131 4199 * 13751 28 2 0 chr11 23996671 23998334 -124785138 + L1PA3 LINE L1 2567 4232 -1914 2495 233 31 12 chr11 23998316 23999195 -124784277 - L1MA8 LINE L1 -3365 4200 3306 * 1864 183 47 48 chr11 23999328 23999887 -124783585 - L1 LINE L1 -2895 4670 4113 * 2536 202 22 73 chr11 23999878 24000661 -124782811 - L1 LINE L1 -3810 3755 3036 1259 170 53 82 chr11 24000661 24000979 -124782493 - AluJo SINE Alu -3 309 1 2536 202 22 73 chr11 24000979 24001248 -124782224 - L1 LINE L1 -4529 3036 2755 21 0 0 0 chr11 24001270 24001291 -124782181 + AT_rich Low_complexity Low_complexity 1 21 0 231 61 0 0 chr11 24001337 24001370 -124782102 + (TG)n Simple_repeat Simple_repeat 1 33 0 2105 222 107 0 chr11 24001764 24002278 -124781194 - LTR36 LTR ERV1 -2 609 41 309 176 121 22 chr11 24002282 24002373 -124781099 - LTR36 LTR ERV1 -511 100 1 224 326 53 32 chr11 24002688 24002783 -124780689 + MIR SINE MIR 49 145 -63 1955 136 0 7 chr11 24003598 24003900 -124779572 - AluSx SINE Alu -12 300 1 5694 82 4 13 chr11 24003959 24004727 -124778745 + LTR17 LTR ERV1 1 761 -19 21 0 0 0 chr11 24004902 24004923 -124778549 + AT_rich Low_complexity Low_complexity 1 21 0 198 347 13 47 chr11 24005215 24005365 -124778107 + MIR SINE MIR 68 212 -50 331 308 25 58 chr11 24005448 24005568 -124777904 - L2 LINE L2 -8 3305 3190 1369 239 66 58 chr11 24006451 24006952 -124776520 - MLT1D LTR MaLR 0 505 1 457 281 41 35 chr11 24007488 24007659 -124775813 - MIR SINE MIR -82 180 9 443 18 18 0 chr11 24008169 24008226 -124775246 - L1PA5 LINE L1 -1320 4826 4769 6932 47 1 2 chr11 24008230 24009497 -124773975 + L1PA5 LINE L1 4840 6105 -49 813 185 6 17 chr11 24009635 24009808 -124773664 + AluSg/x SINE Alu 140 310 0 24 67 0 0 chr11 24010245 24010290 -124773182 + AT_rich Low_complexity Low_complexity 1 45 0 186 103 0 0 chr11 24010577 24010606 -124772866 + (TC)n Simple_repeat Simple_repeat 2 30 0 221 339 16 79 chr11 24012125 24012252 -124771220 - MIR3 SINE MIR -75 133 15 25 0 0 0 chr11 24012285 24012310 -124771162 + AT_rich Low_complexity Low_complexity 1 25 0 29 47 0 0 chr11 24012338 24012381 -124771091 + AT_rich Low_complexity Low_complexity 1 43 0 29 0 0 0 chr11 24013185 24013214 -124770258 + AT_rich Low_complexity Low_complexity 1 29 0 187 316 26 40 chr11 24014092 24014168 -124769304 - MIR SINE MIR -186 76 2 388 235 134 8 chr11 24014188 24014307 -124769165 + MER45A DNA AcHobo 44 177 -1 214 386 71 33 chr11 24015459 24015643 -124767829 - L2 LINE L2 -251 3062 2872 1186 96 56 20 chr11 24015782 24015980 -124767492 - L1PA8 LINE L1 -10 6162 5958 22 35 0 0 chr11 24016331 24016360 -124767112 + AT_rich Low_complexity Low_complexity 1 29 0 184 304 120 54 chr11 24016641 24016733 -124766739 - L2 LINE L2 -9 3263 3166 1306 276 59 52 chr11 24016839 24017375 -124766097 - MLT1F LTR MaLR -3 552 1 233 245 16 0 chr11 24017377 24017446 -124766026 - MLT1F-int LTR MaLR -2 1727 1306 287 210 108 132 chr11 24017521 24017688 -124765784 - MLT1F-int LTR MaLR -173 1198 1036 45 19 0 0 chr11 24017961 24018013 -124765459 + AT_rich Low_complexity Low_complexity 1 52 0 51 31 0 0 chr11 24019573 24019638 -124763834 + AT_rich Low_complexity Low_complexity 1 65 0 584 211 53 70 chr11 24019764 24019935 -124763537 - MLT1A2 LTR MaLR -206 168 1 522 341 73 18 chr11 24020220 24020493 -124762979 + L2 LINE L2 2654 2941 -373 342 115 0 0 chr11 24020964 24021025 -124762447 + (TC)n Simple_repeat Simple_repeat 2 62 0 300 27 0 0 chr11 24021025 24021062 -124762410 + (CA)n Simple_repeat Simple_repeat 1 37 0 223 332 85 40 chr11 24021406 24021605 -124761867 + L3 LINE CR1 1011 1218 -359 193 326 148 0 chr11 24023682 24023817 -124759655 + MIR SINE MIR 77 231 -31 28 0 0 0 chr11 24024052 24024080 -124759392 + AT_rich Low_complexity Low_complexity 1 28 0 238 123 35 0 chr11 24025055 24025112 -124758360 + (TA)n Simple_repeat Simple_repeat 1 59 0 25 0 0 0 chr11 24025299 24025324 -124758148 + AT_rich Low_complexity Low_complexity 1 25 0 933 246 142 28 chr11 24025347 24025664 -124757808 - MLT1A2 LTR MaLR -4 370 18 3127 169 21 14 chr11 24026181 24026809 -124756663 - L1MA8 LINE L1 0 6291 5660 23 0 0 0 chr11 24026877 24026900 -124756572 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr11 24027259 24027282 -124756190 + AT_rich Low_complexity Low_complexity 1 23 0 192 388 0 0 chr11 24028167 24028234 -124755238 + MIR SINE MIR 18 84 -178 591 243 81 24 chr11 24028246 24028456 -124755016 + L1ME2 LINE L1 3906 4127 -2019 * 647 242 88 56 chr11 24028452 24028948 -124754524 + L1ME2 LINE L1 4996 5515 -649 384 194 0 75 chr11 24028992 24029085 -124754387 + MER58A DNA MER1_type 47 132 0 245 290 0 0 chr11 24029089 24029151 -124754321 + MER58A DNA MER1_type 162 223 -1 1576 252 76 26 chr11 24029166 24029769 -124753703 + L1ME2 LINE L1 5522 6154 -10 1677 185 79 5 chr11 24030944 24031322 -124752150 + L1PA13 LINE L1 2353 2758 -3388 5892 190 40 15 chr11 24031322 24033344 -124750128 + L1PA13 LINE L1 4099 6162 -1 237 224 15 30 chr11 24034379 24034446 -124749026 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 714 283 136 18 chr11 24034483 24034755 -124748717 + L2 LINE L2 2998 3301 -12 3279 164 39 8 chr11 24034782 24035405 -124748067 + MER73 LTR ERVL 1 642 -2 186 43 0 0 chr11 24035748 24035771 -124747701 + (A)n Simple_repeat Simple_repeat 1 23 0 782 173 0 0 chr11 24036401 24036551 -124746921 + L1 LINE L1 3259 3408 -2738 1901 164 7 0 chr11 24037150 24037454 -124746018 - AluSx SINE Alu -6 306 1 2305 82 20 0 chr11 24038115 24038418 -124745054 + AluY SINE Alu 1 309 -2 183 295 16 108 chr11 24039958 24040087 -124743385 - L2 LINE L2 -237 3035 2919 354 23 0 0 chr11 24041338 24041381 -124742091 + (CA)n Simple_repeat Simple_repeat 2 44 0 30 0 0 0 chr11 24042099 24042129 -124741343 + AT_rich Low_complexity Low_complexity 1 30 0 44 46 0 0 chr11 24042345 24042410 -124741062 + AT_rich Low_complexity Low_complexity 1 65 0 185 333 54 21 chr11 24042608 24042701 -124740771 + L2 LINE L2 2443 2538 -776 36 87 0 0 chr11 24042861 24042953 -124740519 + AT_rich Low_complexity Low_complexity 1 92 0 437 243 75 29 chr11 24043094 24043267 -124740205 + MIR SINE MIR 82 262 0 1033 72 7 33 chr11 24044722 24044875 -124738597 + L1PA7 LINE L1 6006 6154 0 566 197 0 0 chr11 24045443 24045570 -124737902 + L1MA5 LINE L1 3032 3158 -2988 4696 163 31 27 chr11 24045570 24046470 -124737002 + L1MA5 LINE L1 5397 6300 0 714 277 78 3 chr11 24046473 24046845 -124736627 - MER69 DNA AcHobo -117 2409 2010 450 353 68 4 chr11 24046843 24047092 -124736380 - MER69 DNA AcHobo -1958 568 304 * 1052 239 5 69 chr11 24047281 24047657 -124735815 - MLT1A2 LTR MaLR 0 374 23 348 24 0 0 chr11 24048527 24048568 -124734904 + (CA)n Simple_repeat Simple_repeat 2 42 0 185 233 123 14 chr11 24048977 24049050 -124734422 + MIR SINE MIR 38 118 -90 202 347 69 0 chr11 24049803 24049875 -124733597 - L2 LINE L2 -13 3259 3183 24 85 0 0 chr11 24050728 24050787 -124732685 + AT_rich Low_complexity Low_complexity 1 59 0 415 162 9 81 chr11 24051956 24052067 -124731405 + L1M1 LINE L1 16 118 -7447 * 11521 166 15 5 chr11 24052066 24054531 -124728941 + L1M1 LINE L1 445 3035 -4530 239 297 62 0 chr11 24054699 24054763 -124728709 + MER91C DNA MER1_type 43 110 -30 267 299 22 66 chr11 24054789 24054926 -124728546 + L2 LINE L2 3182 3312 -1 2709 85 3 0 chr11 24055449 24055803 -124727669 + THE1A LTR MaLR 1 355 0 2173 242 64 22 chr11 24056271 24056867 -124726605 + MLT1E2 LTR MaLR 6 626 0 184 219 96 41 chr11 24056911 24056961 -124726511 - L2 LINE L2 -83 3230 3173 974 228 31 97 chr11 24056961 24057352 -124726120 - MLT1A1 LTR MaLR 0 365 1 184 219 96 41 chr11 24057352 24057374 -124726098 - L2 LINE L2 -140 3173 3154 1764 262 111 32 chr11 24057403 24058218 -124725254 + L1MDa LINE L1 1 1112 -5428 291 370 8 0 chr11 24058485 24058612 -124724860 - MER94 DNA DNA -6 128 1 937 159 22 6 chr11 24059228 24059410 -124724062 - L1MA10 LINE L1 -8 6326 6142 988 356 14 43 chr11 24059415 24060042 -124723430 + L1PA16 LINE L1 789 1397 -6177 270 342 30 13 chr11 24060063 24060273 -124723199 + L1PA16 LINE L1 2084 2303 -5271 835 246 14 100 chr11 24060491 24060840 -124722632 + L1PA16 LINE L1 2171 2489 -5092 * 4679 181 41 27 chr11 24060836 24062276 -124721196 + L1PA16 LINE L1 6147 7604 0 660 180 0 0 chr11 24062281 24062403 -124721069 - L1MB1 LINE L1 -44 6145 6024 2478 184 15 29 chr11 24062407 24062715 -124720757 + L1MB1 LINE L1 5343 5643 -525 2122 124 53 28 chr11 24062715 24063070 -124720402 - THE1B LTR MaLR 0 364 1 2478 184 15 29 chr11 24063070 24063283 -124720189 + L1MB1 LINE L1 5643 5857 -311 238 300 12 62 chr11 24064442 24064522 -124718950 - L2 LINE L2 -8 3264 3189 1940 136 3 32 chr11 24064664 24064974 -124718498 + AluSx SINE Alu 1 301 -11 2149 159 78 8 chr11 24065546 24065942 -124717530 - MSTA LTR MaLR -4 424 1 282 372 49 26 chr11 24066135 24066361 -124717111 + MIR SINE MIR 28 258 -4 1408 274 25 43 chr11 24068273 24068827 -124714645 + L1MC4 LINE L1 6467 7010 -1032 1310 216 53 58 chr11 24068828 24069379 -124714093 + L1MC4 LINE L1 7180 7715 -93 302 270 82 31 chr11 24069537 24069733 -124713739 + L1M4 LINE L1 3115 3320 -2826 378 318 88 9 chr11 24069906 24070327 -124713145 + L1M4 LINE L1 3502 3955 -2191 2177 115 0 13 chr11 24070355 24070667 -124712805 - AluSx SINE Alu -4 308 1 300 289 78 64 chr11 24070720 24070883 -124712589 + L1M4 LINE L1 4030 4198 -1948 2296 58 45 0 chr11 24070883 24071174 -124712298 - AluY SINE Alu -7 304 1 300 289 78 64 chr11 24071174 24071228 -124712244 + L1M4 LINE L1 4198 4250 -1896 212 226 48 107 chr11 24071570 24071654 -124711818 + MIR SINE MIR 122 200 -62 4025 107 97 106 chr11 24072710 24074089 -124709383 + pTR5 LTR ERV1 743 2438 0 181 132 0 53 chr11 24074092 24074130 -124709342 + MIR SINE MIR 120 155 -107 306 204 0 146 chr11 24074770 24074873 -124708599 + MER21B LTR ERV1 1 88 -775 1606 269 113 56 chr11 24074897 24075642 -124707830 + MER21B LTR ERV1 17 803 -60 602 329 129 45 chr11 24075934 24076439 -124707033 + L2 LINE L2 2348 2894 -420 231 167 0 0 chr11 24076787 24076829 -124706643 + (TA)n Simple_repeat Simple_repeat 1 42 0 202 178 68 0 chr11 24076861 24076934 -124706538 + (TA)n Simple_repeat Simple_repeat 1 78 0 286 322 87 48 chr11 24077125 24077333 -124706139 + MIR SINE MIR 5 220 -42 742 282 8 43 chr11 24078184 24078418 -124705054 + MER110-int LTR ERV1 3687 3912 -735 351 0 0 0 chr11 24078422 24078461 -124705011 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7265 56 0 1 chr11 24078462 24080154 -124703318 + L1PA5 LINE L1 4469 6154 0 829 273 36 25 chr11 24080220 24080554 -124702918 + MER110A LTR ERV1 176 491 0 25 31 0 0 chr11 24081514 24081546 -124701926 + AT_rich Low_complexity Low_complexity 1 32 0 4983 203 64 3 chr11 24083540 24084603 -124698869 - L1MA1 LINE L1 0 7721 6584 1433 125 19 0 chr11 24084605 24084813 -124698659 - AluSg/x SINE Alu -8 304 93 560 132 0 0 chr11 24084813 24084889 -124698583 + AluS SINE Alu 17 92 -221 8743 195 28 7 chr11 24084889 24086246 -124697226 - L1MA1 LINE L1 -976 6589 5178 2016 136 74 8 chr11 24086246 24086598 -124696874 - THE1C LTR MaLR 0 375 1 8743 195 28 7 chr11 24086598 24087187 -124696285 - L1MA1 LINE L1 -2387 5178 4603 1555 189 112 50 chr11 24087194 24087371 -124696101 + MSTA LTR MaLR 1 166 -262 2416 73 0 3 chr11 24087371 24087673 -124695799 + AluY SINE Alu 1 301 -10 1555 189 112 50 chr11 24087673 24087898 -124695574 + MSTA LTR MaLR 166 428 0 7257 157 107 41 chr11 24087900 24089380 -124694092 + MSTA-int LTR MaLR 3 1580 0 1777 168 127 21 chr11 24089380 24089767 -124693705 + MSTA LTR MaLR 1 428 0 445 196 0 0 chr11 24089767 24089874 -124693598 - L1MA1 LINE L1 -2975 4590 4484 745 262 111 21 chr11 24089998 24090277 -124693195 + MSTA LTR MaLR 125 428 0 3121 220 37 31 chr11 24090278 24091520 -124691952 - L1MA1 LINE L1 -2975 4590 3347 6801 71 0 0 chr11 24091525 24093197 -124690275 - L1PA6 LINE L1 -4 6150 4473 3781 67 2 2 chr11 24093200 24093709 -124689763 + L1P LINE L1 3164 3672 -2474 1596 118 7 28 chr11 24093707 24093994 -124689478 + L1M1 LINE L1 2494 2774 -4791 * 2931 228 52 51 chr11 24093985 24094766 -124688706 - L1MA1 LINE L1 -6767 798 17 242 239 43 43 chr11 24095236 24095353 -124688119 - L1MC4 LINE L1 -1312 6730 6614 351 174 8 41 chr11 24095375 24095496 -124687976 + (TA)n Simple_repeat Simple_repeat 1 117 0 201 111 0 0 chr11 24095507 24095534 -124687938 + (TG)n Simple_repeat Simple_repeat 1 27 0 261 132 57 0 chr11 24095534 24095587 -124687885 - LTR66 LTR ERVL -172 438 383 1007 128 67 17 chr11 24095630 24095750 -124687722 + L1PB1 LINE L1 5833 5966 -185 1832 108 0 4 chr11 24095750 24095999 -124687473 + AluSg SINE Alu 7 254 -56 1007 128 67 17 chr11 24095999 24096057 -124687415 + L1PB1 LINE L1 5966 6020 -131 180 0 0 0 chr11 24096059 24096079 -124687393 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 348 154 22 11 chr11 24096375 24096466 -124687006 + (TA)n Simple_repeat Simple_repeat 1 92 0 1671 91 4 0 chr11 24096466 24096696 -124686776 - L1P5 LINE L1 -360 5791 5561 2302 11 0 8 chr11 24097194 24097457 -124686015 + AluY SINE Alu 39 299 -12 661 263 60 29 chr11 24097809 24098125 -124685347 + L1 LINE L1 2372 2697 -3449 327 266 46 0 chr11 24098255 24098364 -124685108 + L1 LINE L1 4357 4470 -1676 269 241 55 60 chr11 24098595 24098785 -124684687 + L1P LINE L1 4787 4978 -1168 2085 120 7 3 chr11 24099574 24099882 -124683590 - AluSx SINE Alu -3 309 1 22 0 0 0 chr11 24100536 24100558 -124682914 + AT_rich Low_complexity Low_complexity 1 22 0 10437 229 66 19 chr11 24100682 24103877 -124679595 + L1MA7 LINE L1 2117 5160 -1131 1207 225 110 22 chr11 24103877 24104241 -124679231 + MSTD LTR MaLR 1 396 0 10437 229 66 19 chr11 24104241 24104536 -124678936 + L1MA7 LINE L1 5160 5440 -851 1094 204 9 0 chr11 24104536 24104766 -124678706 - MER46A DNA MER2_type 0 236 5 10437 229 66 19 chr11 24104766 24105265 -124678207 + L1MA7 LINE L1 5440 6291 0 283 374 74 0 chr11 24105596 24105786 -124677686 + MIR SINE MIR 45 248 -14 344 198 0 12 chr11 24106995 24107081 -124676391 + GA-rich Low_complexity Low_complexity 3 87 0 1952 72 4 4 chr11 24107096 24107380 -124676092 - AluY SINE Alu 0 317 34 205 298 24 0 chr11 24107697 24107781 -124675691 + (TA)n Simple_repeat Simple_repeat 1 86 0 228 295 0 21 chr11 24107790 24107885 -124675587 + GA-rich Low_complexity Low_complexity 3 95 0 251 277 185 31 chr11 24107894 24108024 -124675448 - MIR3 SINE MIR -28 180 31 25 0 0 0 chr11 24108694 24108719 -124674753 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr11 24108947 24108969 -124674503 + AT_rich Low_complexity Low_complexity 1 22 0 5996 95 33 8 chr11 24109027 24109910 -124673562 - L1PA10 LINE L1 -4 6164 5260 5065 158 6 81 chr11 24109909 24111064 -124672408 + L1P LINE L1 2585 3653 -2493 * 4644 146 32 9 chr11 24111073 24111889 -124671583 + L1P LINE L1 4365 5199 -947 26 30 0 0 chr11 24112081 24112114 -124671358 + AT_rich Low_complexity Low_complexity 1 33 0 1403 214 13 22 chr11 24112131 24112444 -124671028 - AluJo SINE Alu -2 310 1 362 352 141 0 chr11 24113065 24113278 -124670194 - MIR SINE MIR -14 248 6 227 204 0 0 chr11 24113918 24113967 -124669505 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 191 235 15 73 chr11 24114022 24114090 -124669382 - L2 LINE L2 -2 3311 3248 1668 184 0 0 chr11 24114506 24114783 -124668689 + AluJo SINE Alu 10 286 -26 380 246 45 0 chr11 24114851 24114961 -124668511 - MER103 DNA DNA -49 117 3 23 0 0 0 chr11 24115115 24115138 -124668334 + AT_rich Low_complexity Low_complexity 1 23 0 29 28 0 0 chr11 24115557 24115593 -124667879 + AT_rich Low_complexity Low_complexity 1 36 0 2232 110 0 0 chr11 24116422 24116732 -124666740 - AluSg SINE Alu 0 310 1 539 142 62 9 chr11 24116831 24116944 -124666528 - L1MA4 LINE L1 -6 6294 6176 377 262 138 37 chr11 24116965 24117669 -124665803 - L1ME3 LINE L1 -213 5951 5139 1378 256 42 26 chr11 24117674 24118127 -124665345 - MER65C LTR ERV1 -1 460 1 322 270 45 0 chr11 24118662 24118751 -124664721 + L1MC4 LINE L1 6613 6705 -1337 207 179 45 0 chr11 24118752 24118819 -124664653 + (TA)n Simple_repeat Simple_repeat 1 70 0 250 226 20 88 chr11 24118917 24119019 -124664453 + MER5B DNA MER1_type 83 177 -1 2173 309 40 14 chr11 24119039 24119732 -124663740 + L1M4b LINE L1 18 728 -6131 1809 233 14 21 chr11 24119750 24120184 -124663288 + L1M4b LINE L1 942 1372 -5487 24 67 0 0 chr11 24120468 24120513 -124662959 + AT_rich Low_complexity Low_complexity 1 45 0 225 343 15 0 chr11 24120811 24120878 -124662594 - L2 LINE L2 -2 3311 3244 414 323 48 12 chr11 24120952 24121119 -124662353 - MIR SINE MIR -82 180 8 2098 107 41 0 chr11 24121987 24122278 -124661194 - AluSx SINE Alu -9 303 1 53 73 0 0 chr11 24122572 24122681 -124660791 + AT_rich Low_complexity Low_complexity 1 109 0 290 306 118 21 chr11 24122786 24122972 -124660500 + MIR SINE MIR 49 252 -10 22 80 0 0 chr11 24123031 24123081 -124660391 + AT_rich Low_complexity Low_complexity 1 50 0 515 302 145 44 chr11 24123468 24124285 -124659187 - L2 LINE L2 -2 3311 2418 1098 257 10 0 chr11 24125063 24125355 -124658117 + L1 LINE L1 2755 3049 -3097 6042 253 75 32 chr11 24125463 24126097 -124657375 + L1M4b LINE L1 1595 2200 -4757 1729 113 17 66 chr11 24126097 24126398 -124657074 + AluSq SINE Alu 28 313 0 6042 253 75 32 chr11 24126398 24126855 -124656617 + L1M4b LINE L1 2200 2636 -4321 287 19 37 37 chr11 24126855 24126909 -124656563 + (TA)n Simple_repeat Simple_repeat 1 54 0 6042 253 75 32 chr11 24126909 24129810 -124653662 + L1M4b LINE L1 2636 5759 -1198 426 252 9 0 chr11 24129838 24129949 -124653523 + L1M4b LINE L1 5943 6054 -903 601 323 11 48 chr11 24131128 24131397 -124652075 + MIR SINE MIR 3 261 -1 198 71 0 0 chr11 24131598 24131626 -124651846 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 256 113 113 0 chr11 24131626 24131679 -124651793 - L1MC2 LINE L1 -14 6330 6272 786 209 53 5 chr11 24131682 24131869 -124651603 - L1MCa LINE L1 -6224 202 7 352 278 0 0 chr11 24132125 24132222 -124651250 - MER117 DNA MER1_type -99 98 2 423 225 26 10 chr11 24132333 24132462 -124651010 - MLT1J1 LTR MaLR 0 489 349 25 31 0 0 chr11 24133038 24133070 -124650402 + AT_rich Low_complexity Low_complexity 1 32 0 241 240 210 20 chr11 24133768 24133868 -124649604 + MIR SINE MIR 23 141 -121 201 321 12 37 chr11 24133978 24133991 -124649481 - L2 LINE L2 -1 3312 3300 1199 166 78 108 chr11 24133991 24134455 -124649017 - LTR7 LTR ERV1 0 450 1 201 321 12 37 chr11 24134455 24134522 -124648950 - L2 LINE L2 -13 3300 3234 1810 143 7 7 chr11 24134546 24134846 -124648626 + AluJb SINE Alu 13 312 0 260 265 72 72 chr11 24134947 24135030 -124648442 - MIR SINE MIR -173 89 7 1163 238 24 62 chr11 24135285 24135625 -124647847 - MLT1E2 LTR MaLR -4 622 296 383 240 10 10 chr11 24135840 24135940 -124647532 + L1PA15-16 LINE L1 1474 1573 -5276 * 854 211 46 48 chr11 24135928 24136204 -124647268 + L1PB4 LINE L1 1347 1622 -5227 1677 176 0 35 chr11 24136204 24136522 -124646950 + AluJb SINE Alu 1 307 -5 854 211 46 48 chr11 24136522 24136743 -124646729 + L1PB4 LINE L1 1622 1932 -4917 10225 187 27 91 chr11 24136757 24138478 -124644994 + L1PB4 LINE L1 3001 4831 -2028 2007 177 3 20 chr11 24138478 24138822 -124644650 - MER1B DNA MER1_type 0 339 2 10225 187 27 91 chr11 24138822 24140898 -124642574 + L1PB4 LINE L1 4831 6859 0 1384 170 117 11 chr11 24141011 24141293 -124642179 + AluJb SINE Alu 1 312 0 703 264 7 0 chr11 24141357 24141505 -124641967 - MLT1F1 LTR MaLR -90 477 329 32 67 0 0 chr11 24142154 24142214 -124641258 + AT_rich Low_complexity Low_complexity 1 60 0 21 57 0 0 chr11 24143227 24143262 -124640210 + AT_rich Low_complexity Low_complexity 1 35 0 30 27 0 0 chr11 24143289 24143326 -124640146 + AT_rich Low_complexity Low_complexity 1 37 0 180 180 0 54 chr11 24143441 24143552 -124639920 + (TATAG)n Simple_repeat Simple_repeat 1 105 0 277 326 0 54 chr11 24143679 24143808 -124639664 + L1MB1 LINE L1 1945 2066 -5420 1063 263 64 10 chr11 24143834 24144634 -124638838 + L1MB1 LINE L1 3021 3870 -3695 598 147 0 0 chr11 24144660 24144755 -124638717 + L1MB1 LINE L1 5486 5580 -1985 2831 192 27 2 chr11 24144776 24145369 -124638103 + L1MB1 LINE L1 6980 7587 0 281 271 12 0 chr11 24145669 24145754 -124637718 + (TA)n Simple_repeat Simple_repeat 2 87 0 744 240 86 57 chr11 24145920 24145958 -124637514 + MLT1B LTR MaLR 1 36 -354 2024 125 10 0 chr11 24145958 24146253 -124637219 - AluSq SINE Alu -13 300 3 744 240 86 57 chr11 24146253 24146493 -124636979 + MLT1B LTR MaLR 36 287 -103 409 271 0 19 chr11 24146976 24147083 -124636389 - MLT1K LTR MaLR -2 586 482 24 32 0 0 chr11 24147733 24147764 -124635708 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr11 24147828 24147863 -124635609 + AT_rich Low_complexity Low_complexity 1 35 0 1830 237 78 9 chr11 24149068 24149515 -124633957 - ERVL-B1 LTR ERVL -5285 479 2 1029 231 218 49 chr11 24149516 24149961 -124633511 - MLT2B1 LTR ERVL 0 520 1 2533 47 30 0 chr11 24150702 24151003 -124632469 - AluY SINE Alu -1 310 1 185 0 0 39 chr11 24153841 24153867 -124629605 + (TTTTA)n Simple_repeat Simple_repeat 3 27 0 2489 73 0 0 chr11 24153867 24154184 -124629288 - L1PA7 LINE L1 -16 6138 5822 2682 43 0 46 chr11 24154184 24154499 -124628973 + L1P3 LINE L1 5475 5774 -380 2268 107 3 0 chr11 24154499 24154809 -124628663 + AluY SINE Alu 1 311 0 2682 43 0 46 chr11 24154809 24154844 -124628628 + L1P3 LINE L1 5774 5809 -345 2443 91 0 0 chr11 24155943 24156252 -124627220 - AluY SINE Alu -2 309 1 251 159 58 0 chr11 24156283 24156352 -124627120 + (TA)n Simple_repeat Simple_repeat 2 74 0 1364 215 56 97 chr11 24156448 24157150 -124626322 - MER61E LTR ERV1 0 779 2 828 253 96 81 chr11 24158351 24159119 -124624353 + L1M4 LINE L1 719 1498 -5044 2573 258 49 42 chr11 24159122 24159875 -124623597 + L1M4 LINE L1 2389 3098 -3546 2248 116 3 0 chr11 24159875 24160178 -124623294 + AluSq SINE Alu 3 306 -7 2573 258 49 42 chr11 24160178 24160785 -124622687 + L1M4 LINE L1 3098 3699 -2945 226 295 39 0 chr11 24161096 24161174 -124622298 - MLT1J LTR MaLR -9 502 422 461 284 154 12 chr11 24161188 24161350 -124622122 - MER63A DNA MER1_type -25 185 1 524 232 28 109 chr11 24162067 24162205 -124621267 + MLT1D LTR MaLR 1 118 -387 2028 130 75 20 chr11 24162205 24162550 -124620922 + THE1B LTR MaLR 1 364 0 524 232 28 109 chr11 24162550 24162622 -124620850 + MLT1D LTR MaLR 118 194 -311 538 264 62 65 chr11 24162637 24162944 -124620528 + MER21B LTR ERV1 408 713 -150 250 228 8 39 chr11 24163359 24163486 -124619986 + T-rich Low_complexity Low_complexity 3 125 0 247 223 0 32 chr11 24164780 24164874 -124618598 + (CATATA)n Simple_repeat Simple_repeat 2 92 0 546 230 31 50 chr11 24164984 24165145 -124618327 + MER90 LTR ERV1 3 160 -415 2249 106 3 0 chr11 24165270 24165571 -124617901 - AluSp SINE Alu -11 302 1 222 381 60 8 chr11 24166519 24166653 -124616819 + MIR SINE MIR 17 157 -105 237 310 55 55 chr11 24166765 24166910 -124616562 - L2 LINE L2 -341 2973 2829 807 282 174 29 chr11 24166992 24167741 -124615731 + Charlie2 DNA MER1_type 1927 2783 -79 1689 124 124 0 chr11 24167804 24168071 -124615401 + AluSx SINE Alu 1 300 -2 3339 179 75 8 chr11 24168071 24168787 -124614685 - LTR1B LTR ERV1 -6 779 1 44 63 0 0 chr11 24169071 24169150 -124614322 + AT_rich Low_complexity Low_complexity 1 79 0 225 330 93 0 chr11 24169631 24169728 -124613744 - L2 LINE L2 -56 3216 3111 425 243 68 57 chr11 24170208 24170385 -124613087 + L1MEc LINE L1 14 192 -6204 23 0 0 0 chr11 24170434 24170457 -124613015 + AT_rich Low_complexity Low_complexity 1 23 0 368 257 81 14 chr11 24170458 24170606 -124612866 + L1MEc LINE L1 1875 2032 -4364 277 294 77 21 chr11 24170699 24170842 -124612630 + L1MEc LINE L1 2051 2201 -4195 422 245 182 19 chr11 24170889 24171207 -124612265 + L1MEc LINE L1 3222 3591 -2624 257 241 84 36 chr11 24171600 24171683 -124611789 - LTR33 LTR ERVL -136 385 299 437 229 109 70 chr11 24172024 24172225 -124611247 - MIR SINE MIR -24 238 30 387 338 15 8 chr11 24172921 24173054 -124610418 - MIR SINE MIR -105 157 24 209 239 22 0 chr11 24173072 24173118 -124610354 - MIR SINE MIR -171 91 45 488 315 123 0 chr11 24173215 24173377 -124610095 - MIR SINE MIR -13 249 68 224 173 80 0 chr11 24173475 24173550 -124609922 + (TTAAA)n Simple_repeat Simple_repeat 3 83 0 1440 254 77 60 chr11 24173602 24174137 -124609335 + MER90 LTR ERV1 70 613 -1 289 317 24 32 chr11 24175299 24175422 -124608050 - MLT1K LTR MaLR -368 220 99 195 100 0 0 chr11 24175562 24175592 -124607880 + (TA)n Simple_repeat Simple_repeat 2 31 0 483 28 14 42 chr11 24175650 24175722 -124607750 - L1PA8 LINE L1 -6 6166 6097 31 0 0 0 chr11 24175755 24175786 -124607686 + AT_rich Low_complexity Low_complexity 1 31 0 387 293 43 30 chr11 24176691 24176855 -124606617 + MIR SINE MIR 49 214 -48 193 222 89 56 chr11 24176907 24176997 -124606475 + L2 LINE L2 3021 3113 -200 362 214 38 61 chr11 24177078 24177209 -124606263 - MER97a DNA MER1_type? -303 591 464 312 308 60 26 chr11 24177581 24177698 -124605774 + MIR3 SINE MIR 5 125 -83 2008 136 7 0 chr11 24178146 24178440 -124605032 + AluSx SINE Alu 1 296 -16 189 360 72 16 chr11 24178830 24178955 -124604517 + MIR SINE MIR 26 157 -105 356 141 0 28 chr11 24179510 24179581 -124603891 + (TATATG)n Simple_repeat Simple_repeat 6 74 0 261 209 0 0 chr11 24180545 24180612 -124602860 + CT-rich Low_complexity Low_complexity 2 68 0 438 274 128 29 chr11 24180734 24181507 -124601965 - L1MCc LINE L1 -4820 2147 1159 2010 166 145 30 chr11 24182790 24183295 -124600177 - LTR49 LTR ERV1 -32 563 1 246 172 69 58 chr11 24183485 24183572 -124599900 + L1M4 LINE L1 4121 4208 -1938 1476 164 26 11 chr11 24183643 24183911 -124599561 - MER4D LTR ERV1 0 903 632 1222 197 15 42 chr11 24183911 24184077 -124599395 - LTR8 LTR ERV1 0 691 533 1914 180 80 10 chr11 24184077 24184477 -124598995 - MSTA LTR MaLR 0 428 1 1222 197 15 42 chr11 24184477 24184569 -124598903 - LTR8 LTR ERV1 -158 533 440 1904 127 16 37 chr11 24184584 24184906 -124598566 - LTR8 LTR ERV1 -376 315 1 * 3367 166 52 5 chr11 24184906 24185515 -124597957 - MER4D LTR ERV1 -265 638 1 29678 118 15 62 chr11 24185917 24192382 -124591090 - L1PA7 LINE L1 0 6154 12 2047 120 9 25 chr11 24192401 24192718 -124590754 - AluSx SINE Alu 0 312 1 22 35 0 0 chr11 24193492 24193521 -124589951 + AT_rich Low_complexity Low_complexity 1 29 0 1701 189 0 7 chr11 24193959 24194266 -124589206 - AluJo SINE Alu -7 305 1 240 335 95 22 chr11 24194288 24194467 -124589005 + L3 LINE CR1 1386 1577 0 2411 97 0 0 chr11 24198549 24198858 -124584614 - AluSc SINE Alu 0 309 1 275 332 118 35 chr11 24199693 24199922 -124583550 + MIR SINE MIR 15 262 0 214 288 0 0 chr11 24200293 24200352 -124583120 + T-rich Low_complexity Low_complexity 1 59 0 832 167 13 0 chr11 24200386 24200536 -124582936 + MER67D LTR ERV1 1 152 -362 250 313 12 0 chr11 24200574 24200654 -124582818 - AluSc SINE Alu -21 278 198 24 32 0 0 chr11 24201092 24201123 -124582349 + AT_rich Low_complexity Low_complexity 1 31 0 326 299 34 26 chr11 24201359 24201476 -124581996 - MIR SINE MIR -44 218 101 229 247 0 65 chr11 24201538 24201615 -124581857 + CT-rich Low_complexity Low_complexity 5 76 0 31 44 0 0 chr11 24201917 24201962 -124581510 + AT_rich Low_complexity Low_complexity 1 45 0 25 51 0 0 chr11 24202360 24202399 -124581073 + AT_rich Low_complexity Low_complexity 1 39 0 2017 122 0 56 chr11 24202852 24203171 -124580301 - AluSx SINE Alu -11 301 1 235 360 26 33 chr11 24203348 24203501 -124579971 - MIR SINE MIR -34 228 77 322 358 69 51 chr11 24203503 24203894 -124579578 - MLT1J LTR MaLR -2 509 112 390 21 0 0 chr11 24204046 24204093 -124579379 + (TG)n Simple_repeat Simple_repeat 2 48 0 180 0 0 0 chr11 24204469 24204489 -124578983 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2059 108 0 0 chr11 24204489 24204766 -124578706 - AluSg SINE Alu -33 277 1 21 89 0 0 chr11 24204892 24204948 -124578524 + AT_rich Low_complexity Low_complexity 1 56 0 206 313 45 0 chr11 24205184 24205251 -124578221 + L2 LINE L2 3244 3313 0 230 267 0 0 chr11 24206069 24206129 -124577343 - L1ME1 LINE L1 -67 6099 6040 456 330 94 0 chr11 24206656 24206868 -124576604 + MIR SINE MIR 2 233 -29 351 0 0 0 chr11 24207179 24207218 -124576254 + (TG)n Simple_repeat Simple_repeat 2 40 0 757 236 113 8 chr11 24207584 24207975 -124575497 + L1MC/D LINE L1 5100 5526 -743 738 317 49 13 chr11 24207979 24208370 -124575102 - L1MDa LINE L1 -3394 3146 2742 1743 159 3 14 chr11 24208370 24208701 -124574771 - AluSx SINE Alu 0 328 1 4494 197 70 20 chr11 24208815 24209836 -124573636 - L1MC1 LINE L1 -6 6327 5256 1490 207 13 13 chr11 24209856 24210156 -124573316 - AluJb SINE Alu -8 304 5 353 156 0 0 chr11 24210158 24210222 -124573250 + L1MA5A LINE L1 6228 6291 -6 868 158 39 47 chr11 24210285 24210519 -124572953 - L1MA5A LINE L1 -36 6261 6030 606 272 10 36 chr11 24210515 24210710 -124572762 - L1MC1 LINE L1 -922 5224 5035 * 1015 268 17 22 chr11 24210714 24211091 -124572381 - L1MDa LINE L1 -3932 2608 2235 787 225 109 14 chr11 24211284 24211560 -124571912 - L1MDa LINE L1 -4402 2138 1837 350 250 10 0 chr11 24211560 24211664 -124571808 + (TA)n Simple_repeat Simple_repeat 2 106 0 1453 243 93 47 chr11 24211664 24211693 -124571779 + L1ME2 LINE L1 5291 5317 -847 2529 165 26 4 chr11 24211693 24212185 -124571287 + L1MA4 LINE L1 5793 6295 -5 1453 243 93 47 chr11 24212185 24212792 -124570680 + L1ME2 LINE L1 5317 5956 -208 240 228 0 0 chr11 24212873 24212930 -124570542 + (TATATG)n Simple_repeat Simple_repeat 2 58 0 230 260 0 42 chr11 24212986 24213082 -124570390 - L1MC4 LINE L1 -1338 6704 6613 263 238 0 12 chr11 24213082 24213166 -124570306 + (TA)n Simple_repeat Simple_repeat 2 84 0 256 165 71 24 chr11 24213168 24213253 -124570219 - L1MC4 LINE L1 -1339 6703 6615 228 213 25 38 chr11 24213238 24213318 -124570154 + L1MC3 LINE L1 6569 6647 -1138 * 196 270 10 80 chr11 24214414 24214514 -124568958 + MIR SINE MIR 124 216 -46 258 265 72 0 chr11 24214524 24214607 -124568865 + MIR3 SINE MIR 119 207 -1 21 0 0 0 chr11 24214836 24214857 -124568615 + AT_rich Low_complexity Low_complexity 1 21 0 2041 138 22 40 chr11 24215107 24215478 -124567994 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr11 24215485 24215506 -124567966 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr11 24215586 24215616 -124567856 + AT_rich Low_complexity Low_complexity 1 30 0 1237 191 4 8 chr11 24216539 24216775 -124566697 + MER46A DNA MER2_type 2 236 0 202 197 70 0 chr11 24216894 24216965 -124566507 + T-rich Low_complexity Low_complexity 4 79 0 3870 77 8 0 chr11 24216965 24217475 -124565997 - L1PA7 LINE L1 -11 6143 5630 231 333 27 0 chr11 24217782 24217857 -124565615 + MIR SINE MIR 80 156 -106 2181 101 10 0 chr11 24218089 24218395 -124565077 - AluY SINE Alu -2 309 1 296 307 186 26 chr11 24220775 24221156 -124562316 - L3 LINE CR1 -40 1537 1096 285 296 87 9 chr11 24221552 24221667 -124561805 + MIR SINE MIR 132 255 -7 2254 110 0 3 chr11 24221891 24222199 -124561273 - AluSc SINE Alu -2 307 1 270 0 0 0 chr11 24222202 24222232 -124561240 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 5591 123 15 2 chr11 24222232 24223369 -124560103 - L1PA14 LINE L1 -9 6152 5002 512 139 0 0 chr11 24223369 24223448 -124560024 - AluJ/FRAM SINE Alu -16 296 218 1841 173 10 0 chr11 24223488 24223789 -124559683 - AluJb SINE Alu -6 306 3 4313 179 73 3 chr11 24223789 24224391 -124559081 - L1PA14 LINE L1 -1127 5019 4334 194 0 0 37 chr11 24224391 24224418 -124559054 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 4313 179 73 3 chr11 24224418 24224703 -124558769 - L1PA14 LINE L1 -1812 4334 4070 377 345 108 48 chr11 24224971 24225565 -124557907 + L2 LINE L2 2684 3313 0 261 0 0 0 chr11 24226889 24226918 -124556554 + (CA)n Simple_repeat Simple_repeat 1 29 0 214 345 0 0 chr11 24227758 24227816 -124555656 - MIR SINE MIR -69 139 82 1283 115 0 0 chr11 24227984 24228166 -124555306 - AluSp SINE Alu -2 311 130 2700 65 3 0 chr11 24228169 24228520 -124554952 - L1PA5 LINE L1 -5 6149 5798 3990 216 12 4 chr11 24228620 24229532 -124553940 + L1PB1 LINE L1 3167 4085 -2061 5395 178 29 5 chr11 24229543 24231366 -124552106 + L1PB1 LINE L1 4295 6150 -1 244 265 98 20 chr11 24231383 24231485 -124551987 + L1MC4a LINE L1 5870 5979 -1829 220 68 23 23 chr11 24231506 24231550 -124551922 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 25 0 0 0 chr11 24232162 24232187 -124551285 + AT_rich Low_complexity Low_complexity 1 25 0 189 0 0 0 chr11 24232541 24232562 -124550910 + (TTTTTG)n Simple_repeat Simple_repeat 4 24 0 198 0 0 0 chr11 24232884 24232906 -124550566 + (TC)n Simple_repeat Simple_repeat 1 22 0 2301 108 0 0 chr11 24233002 24233308 -124550164 + AluSx SINE Alu 1 306 -6 1962 137 16 10 chr11 24333309 24333615 -124449857 + LTR9 LTR ERV1 305 612 0 3378 116 50 0 chr11 24334002 24334526 -124448946 + MER41A LTR ERV1 5 554 0 273 175 0 0 chr11 24334630 24334693 -124448779 + L1PB3 LINE L1 6092 6154 0 986 193 57 112 chr11 24334921 24335305 -124448167 - MLT1A1 LTR MaLR -2 363 1 244 151 75 0 chr11 24335380 24335433 -124448039 - MLT2B2 LTR ERVL 0 520 464 272 195 0 46 chr11 24335433 24335520 -124447952 + (TA)n Simple_repeat Simple_repeat 1 83 0 845 208 10 58 chr11 24335521 24335728 -124447744 - MLT2B2 LTR ERVL -40 475 279 335 250 21 71 chr11 24335867 24336007 -124447465 - L1MC4 LINE L1 -1274 6768 6636 1241 256 111 33 chr11 24336012 24336952 -124446520 - L1MC4a LINE L1 -1290 6518 5381 1112 141 36 32 chr11 24337196 24337416 -124446056 - HERVH LTR ERV1 -1896 5817 5597 * 4184 139 23 3 chr11 24337413 24338062 -124445410 - HERVH LTR ERV1 -2564 5149 4488 1477 87 0 5 chr11 24338064 24338271 -124445201 - HERVH LTR ERV1 -3720 3993 3788 26 30 0 0 chr11 24339296 24339329 -124444143 + AT_rich Low_complexity Low_complexity 1 33 0 1259 161 0 0 chr11 24339595 24339800 -124443672 + Tigger5 DNA MER2_type 2119 2323 0 328 312 18 0 chr11 24340945 24341054 -124442418 - L2 LINE L2 -9 3304 3194 247 169 39 91 chr11 24341731 24341808 -124441664 - MIR SINE MIR -97 165 93 648 168 127 35 chr11 24343071 24343268 -124440204 - MER114 LTR ERV -60 588 374 2836 244 84 34 chr11 24343270 24344286 -124439186 - L1MEc LINE L1 -5294 1102 36 427 282 77 57 chr11 24344446 24344655 -124438817 - MLT1C LTR MaLR -123 344 132 846 76 68 0 chr11 24344745 24344863 -124438609 - L1PA11 LINE L1 -17 6157 6032 624 242 108 25 chr11 24344923 24345203 -124438269 - L1M4 LINE L1 -2280 3866 3565 22 0 0 0 chr11 24346096 24346118 -124437354 + AT_rich Low_complexity Low_complexity 1 22 0 893 164 15 8 chr11 24346144 24346337 -124437135 - L1MD2 LINE L1 -126 6038 5841 1450 237 40 3 chr11 24346341 24346695 -124436777 + L1MD2 LINE L1 5985 6351 -8 789 212 28 15 chr11 24346937 24347128 -124436344 - MLT1C LTR MaLR 0 490 288 23 33 0 0 chr11 24347675 24347705 -124435767 + AT_rich Low_complexity Low_complexity 1 30 0 268 306 46 40 chr11 24348501 24348847 -124434625 + L1M4 LINE L1 4455 4802 -1344 221 312 91 0 chr11 24349940 24350017 -124433455 + L2 LINE L2 3227 3310 -3 914 97 30 0 chr11 24350090 24350224 -124433248 - AluSg/x SINE Alu -20 290 153 944 130 7 19 chr11 24350234 24350388 -124433084 + AluSg/x SINE Alu 144 295 -17 24 32 0 0 chr11 24350681 24350712 -124432760 + GC_rich Low_complexity Low_complexity 1 31 0 32 0 0 0 chr11 24350723 24350755 -124432717 + GC_rich Low_complexity Low_complexity 1 32 0 1582 123 18 18 chr11 24351421 24351697 -124431775 - AluY SINE Alu 0 311 36 601 158 26 2 chr11 24352527 24352653 -124430819 + THE1-int LTR MaLR 1137 1252 -328 384 0 17 35 chr11 24352879 24352937 -124430535 + (TG)n Simple_repeat Simple_repeat 2 58 0 33 66 0 0 chr11 24353212 24353273 -124430199 + AT_rich Low_complexity Low_complexity 1 61 0 202 358 123 25 chr11 24353669 24353873 -124429599 - L2 LINE L2 0 3313 3090 21 89 0 0 chr11 24354003 24354059 -124429413 + AT_rich Low_complexity Low_complexity 1 56 0 388 143 52 26 chr11 24354205 24354282 -124429190 - MSTA LTR MaLR -349 79 1 4662 181 26 25 chr11 24354290 24355578 -124427894 - L1 LINE L1 -3598 3967 2678 293 196 18 0 chr11 24356162 24356218 -124427254 + L1MD3 LINE L1 6890 6946 -1049 1535 238 52 35 chr11 24356221 24356453 -124427019 + L1MD3 LINE L1 7451 7678 -317 1881 141 3 17 chr11 24356453 24356750 -124426722 + AluSx SINE Alu 1 293 -19 1535 238 52 35 chr11 24356750 24357001 -124426471 + L1MD3 LINE L1 7678 7942 -53 389 264 61 12 chr11 24356999 24357162 -124426310 - L1M4 LINE L1 -957 5189 5019 * 1607 178 7 20 chr11 24357864 24358167 -124425305 + THE1C LTR MaLR 77 375 0 230 276 83 41 chr11 24358183 24358328 -124425144 - L1ME LINE L1 -469 5652 5502 2443 97 59 45 chr11 24358331 24358773 -124424699 + LTR7 LTR ERV1 1 448 -2 1217 170 58 0 chr11 24358846 24359069 -124424403 - AluJb SINE Alu -1 311 76 1668 192 15 0 chr11 24359254 24359587 -124423885 + L1 LINE L1 4699 5036 -1110 6960 113 1 16 chr11 24359925 24360953 -124422519 - HERV9 LTR ERV1 -7027 1372 360 1064 121 7 0 chr11 24361053 24361202 -124422270 - MER41C LTR ERV1 -404 150 1 478 170 11 11 chr11 24361202 24361295 -124422177 - MER4A LTR ERV1 -571 93 1 4794 169 11 8 chr11 24361597 24362463 -124421009 + MER4D LTR ERV1 4 872 0 347 172 35 46 chr11 24362566 24362653 -124420819 - LTR7 LTR ERV1 -2 448 363 1971 166 98 15 chr11 24363062 24363459 -124420013 + MER41C LTR ERV1 125 554 0 1849 151 21 25 chr11 24363490 24363931 -124419541 + MER4A LTR ERV1 90 664 0 216 0 0 0 chr11 24364460 24364484 -124418988 + (A)n Simple_repeat Simple_repeat 1 24 0 212 162 0 0 chr11 24364498 24364535 -124418937 + (CAAA)n Simple_repeat Simple_repeat 3 39 0 266 304 27 54 chr11 24364535 24364647 -124418825 + MIR SINE MIR 40 148 -114 777 185 5 49 chr11 24364848 24365032 -124418440 + pTR5 LTR ERV1 743 918 -1520 2016 108 42 11 chr11 24365189 24365476 -124417996 + AluSq SINE Alu 4 299 -14 244 310 112 0 chr11 24366001 24366117 -124417355 + MIR3 SINE MIR 40 168 -40 236 223 45 9 chr11 24366306 24366418 -124417054 + (TA)n Simple_repeat Simple_repeat 2 117 0 886 181 119 84 chr11 24366597 24366715 -124416757 - LTR49 LTR ERV1 -264 331 219 2215 89 0 7 chr11 24366715 24367008 -124416464 - AluY SINE Alu -20 291 1 886 181 119 84 chr11 24367008 24367209 -124416263 - LTR49 LTR ERV1 -376 219 1 215 148 37 0 chr11 24367235 24367289 -124416183 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 4010 151 12 58 chr11 24367370 24368124 -124415348 - MER4D LTR ERV1 -14 889 173 2779 154 10 50 chr11 24368124 24368642 -124414830 + LOR1a LTR ERV1 1 497 0 4010 151 12 58 chr11 24368642 24368701 -124414771 - MER4D LTR ERV1 -730 173 113 1201 251 65 15 chr11 24368873 24369276 -124414196 - L1M4 LINE L1 -1110 5036 4614 519 296 47 42 chr11 24369469 24369682 -124413790 + MIR SINE MIR 37 250 -12 1683 181 80 92 chr11 24370567 24371069 -124412403 - LTR8 LTR ERV1 -195 496 1 631 135 0 29 chr11 24372832 24372936 -124410536 - L1MA9 LINE L1 -533 5779 5679 * 1775 225 56 24 chr11 24372911 24373408 -124410064 + L1MA9 LINE L1 5762 6274 -38 337 332 104 25 chr11 24373492 24373733 -124409739 - MIR SINE MIR -1 261 2 24 0 0 0 chr11 24373805 24373829 -124409643 + AT_rich Low_complexity Low_complexity 1 24 0 185 300 50 30 chr11 24373915 24374015 -124409457 - MIR SINE MIR -62 146 45 21 36 0 0 chr11 24375783 24375811 -124407661 + AT_rich Low_complexity Low_complexity 1 28 0 1083 263 86 65 chr11 24376481 24377005 -124406467 - MLT1F LTR MaLR -7 535 1 1163 213 11 4 chr11 24377851 24378128 -124405344 - L1M4 LINE L1 -1746 4400 4122 269 271 0 0 chr11 24378114 24378173 -124405299 + MLT1-int LTR MaLR 426 484 -887 * 280 286 135 19 chr11 24378188 24378447 -124405025 + L1ME2 LINE L1 4557 4845 -1301 31 113 0 0 chr11 24378527 24378677 -124404795 + AT_rich Low_complexity Low_complexity 1 150 0 1179 288 86 8 chr11 24378980 24379620 -124403852 + L1ME2 LINE L1 5153 5841 -323 14466 86 4 8 chr11 24380159 24382138 -124401334 - HERV9 LTR ERV1 -3521 4878 2908 22 35 0 0 chr11 24382954 24382983 -124400489 + AT_rich Low_complexity Low_complexity 1 29 0 28 61 0 0 chr11 24383419 24383468 -124400004 + AT_rich Low_complexity Low_complexity 1 49 0 15737 90 18 22 chr11 24384268 24386645 -124396827 + HERVH LTR ERV1 1 2367 -5346 1652 114 30 89 chr11 24386791 24386893 -124396579 - L1MA8 LINE L1 -4 6287 6180 2184 128 0 0 chr11 24386893 24387189 -124396283 + AluSq SINE Alu 1 296 -17 1652 114 30 89 chr11 24387189 24387455 -124396017 - L1MA8 LINE L1 -111 6180 5941 296 258 0 0 chr11 24387457 24387523 -124395949 - MLT1E2 LTR MaLR -435 191 126 1391 215 3 17 chr11 24387611 24387909 -124395563 - AluJb SINE Alu -18 294 1 183 80 0 0 chr11 24387924 24387949 -124395523 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 188 370 0 33 chr11 24388650 24388742 -124394730 + MIR SINE MIR 8 96 -166 200 167 48 0 chr11 24389242 24389284 -124394188 + CT-rich Low_complexity Low_complexity 5 48 0 291 275 0 0 chr11 24389805 24389885 -124393587 - MER116 DNA Mariner 0 80 1 406 302 31 50 chr11 24390459 24390840 -124392632 + HAL1b LINE L1 194 567 -781 318 305 114 32 chr11 24390910 24391251 -124392221 + HAL1b LINE L1 429 797 -551 1084 208 53 7 chr11 24391444 24391747 -124391725 + MER33 DNA MER1_type 7 323 -1 5300 163 42 5 chr11 24391767 24392732 -124390740 - Tigger1 DNA MER2_type -7 2411 1411 5248 155 43 0 chr11 24392750 24393628 -124389844 - Tigger1 DNA MER2_type -1221 1197 282 1067 93 0 0 chr11 24393628 24393767 -124389705 - AluSp/q SINE Alu -12 301 163 227 289 24 0 chr11 24394305 24394388 -124389084 + L1ME LINE L1 2 86 -5984 21 0 0 0 chr11 24394388 24394409 -124389063 + AT_rich Low_complexity Low_complexity 1 21 0 3624 147 15 7 chr11 24394585 24395203 -124388269 + L1PA15 LINE L1 5537 6159 -6 3877 195 31 10 chr11 24395203 24396306 -124387166 - L1P4 LINE L1 -696 5470 4342 319 179 170 6 chr11 24397195 24397336 -124386136 - LTR37B LTR ERV1 0 459 312 22 0 0 0 chr11 24397336 24397358 -124386114 + AT_rich Low_complexity Low_complexity 1 22 0 1929 151 3 0 chr11 24397435 24397727 -124385745 + AluSg SINE Alu 1 293 -17 432 258 60 48 chr11 24397736 24398004 -124385468 - L1MC4a LINE L1 -591 7217 6947 660 247 105 54 chr11 24398015 24398347 -124385125 + L1MC4a LINE L1 7457 7805 -3 363 362 59 0 chr11 24398576 24398728 -124384744 + MIR SINE MIR 78 238 -24 8153 210 24 14 chr11 24399126 24399500 -124383972 - L1 LINE L1 -1916 5649 5280 1992 166 40 0 chr11 24399500 24399850 -124383622 + THE1B LTR MaLR 1 364 0 8153 210 24 14 chr11 24399850 24401859 -124381613 - L1 LINE L1 -2285 5280 3243 387 238 167 66 chr11 24402217 24402444 -124381028 - LTR16C LTR ERVL -160 331 82 290 238 71 56 chr11 24402518 24402644 -124380828 + MER103 DNA DNA 30 157 -9 235 250 0 18 chr11 24402712 24402768 -124380704 - MIR3 SINE MIR -48 160 106 53 78 0 0 chr11 24402993 24403109 -124380363 + AT_rich Low_complexity Low_complexity 1 116 0 4781 142 5 9 chr11 24403595 24404389 -124379083 + L1PA13 LINE L1 5373 6163 0 311 289 117 49 chr11 24404899 24405196 -124378276 - L2 LINE L2 -354 2960 1975 23 54 0 0 chr11 24405336 24405373 -124378099 + AT_rich Low_complexity Low_complexity 1 37 0 256 361 37 0 chr11 24406540 24406648 -124376824 + L2 LINE L2 2866 2977 -295 383 327 83 19 chr11 24406659 24406864 -124376608 + MIR SINE MIR 1 218 -44 1517 84 4 13 chr11 24407044 24407269 -124376203 - pTR5 LTR ERV1 -2044 394 172 304 265 10 0 chr11 24407272 24407370 -124376102 - LTR30 LTR ERV1 -80 642 544 1535 104 82 145 chr11 24407370 24407736 -124375736 - pTR5 LTR ERV1 -413 2025 1683 2134 96 10 23 chr11 24407988 24408291 -124375181 + AluSp SINE Alu 1 299 -14 375 23 0 0 chr11 24408296 24408340 -124375132 + (CA)n Simple_repeat Simple_repeat 2 45 0 281 373 93 30 chr11 24408841 24409077 -124374395 - MIR SINE MIR -8 254 4 429 357 155 14 chr11 24409446 24409743 -124373729 + L3 LINE CR1 1170 1508 -69 284 336 36 79 chr11 24411763 24412016 -124371456 - L3 LINE CR1 -178 1399 1158 1334 207 57 27 chr11 24412862 24413196 -124370276 + THE1C LTR MaLR 32 375 0 3990 161 42 11 chr11 24413214 24413921 -124369551 + THE1C-int LTR MaLR 852 1580 0 1535 191 52 33 chr11 24413923 24414289 -124369183 + THE1C LTR MaLR 3 375 0 21 0 0 0 chr11 24414460 24414481 -124368991 + AT_rich Low_complexity Low_complexity 1 21 0 255 269 96 30 chr11 24415074 24415241 -124368231 - MIR SINE MIR -15 247 70 190 325 32 49 chr11 24415900 24416023 -124367449 - MIR SINE MIR -140 122 2 231 336 42 49 chr11 24418248 24418391 -124365081 - MIR SINE MIR -54 208 67 251 175 18 0 chr11 24419794 24419851 -124363621 + GA-rich Low_complexity Low_complexity 1 58 0 356 307 72 15 chr11 24420363 24420672 -124362800 - L1MEc LINE L1 -4933 1671 1162 203 265 0 0 chr11 24420872 24420921 -124362551 + CT-rich Low_complexity Low_complexity 4 52 0 947 220 164 38 chr11 24420975 24421371 -124362101 - L1MC4 LINE L1 -137 7905 7460 255 292 34 11 chr11 24421421 24421510 -124361962 - LTR16B LTR ERVL -184 280 190 710 170 71 55 chr11 24421520 24421702 -124361770 - MER20 DNA MER1_type -34 185 1 22 56 0 0 chr11 24421915 24421951 -124361521 + AT_rich Low_complexity Low_complexity 1 36 0 21 71 0 0 chr11 24422268 24422310 -124361162 + AT_rich Low_complexity Low_complexity 1 42 0 28 48 0 0 chr11 24422416 24422458 -124361014 + AT_rich Low_complexity Low_complexity 1 42 0 2197 173 34 2 chr11 24423584 24424023 -124359449 - L1MA3 LINE L1 -10 6295 5843 2884 216 27 71 chr11 24424024 24424168 -124359304 - L1M4 LINE L1 -1835 5730 5581 273 29 0 0 chr11 24424168 24424202 -124359270 + (TTCC)n Simple_repeat Simple_repeat 2 35 0 459 0 0 0 chr11 24424210 24424261 -124359211 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2884 216 27 71 chr11 24424261 24425394 -124358078 - L1M4 LINE L1 -1991 5574 4597 1033 91 34 11 chr11 24425396 24425572 -124357900 - AluY SINE Alu -2 309 130 5306 213 33 56 chr11 24425755 24427719 -124355753 - L1M4 LINE L1 -4931 2634 16 1682 235 52 20 chr11 24427778 24428217 -124355255 + LOR1b LTR ERV1 1 453 -8 182 338 91 78 chr11 24428281 24428575 -124354897 + L2 LINE L2 2945 3245 -27 216 0 0 0 chr11 24428575 24428599 -124354873 + (CA)n Simple_repeat Simple_repeat 2 25 0 182 338 91 78 chr11 24428599 24428624 -124354848 + L2 LINE L2 3245 3268 -4 2195 194 31 0 chr11 24428919 24429332 -124354140 - MSTA LTR MaLR -2 426 1 863 251 100 33 chr11 24429864 24429960 -124353512 - Charlie4a DNA MER1_type -1472 489 401 528 154 39 58 chr11 24429960 24430064 -124353408 + U6 snRNA snRNA 2 103 -4 2346 90 0 0 chr11 24430073 24430374 -124353098 - AluY SINE Alu -10 301 1 863 251 100 33 chr11 24430374 24430725 -124352747 - Charlie4a DNA MER1_type -1567 394 1 1293 235 3 17 chr11 24432233 24432421 -124351051 - AluSx SINE Alu -12 300 116 333 0 0 0 chr11 24432421 24432458 -124351014 + (TG)n Simple_repeat Simple_repeat 2 38 0 1293 235 3 17 chr11 24432458 24432571 -124350901 - AluSx SINE Alu -196 116 3 232 258 0 15 chr11 24432940 24433006 -124350466 + T-rich Low_complexity Low_complexity 5 69 0 296 365 37 0 chr11 24433084 24433273 -124350199 - L1ME LINE L1 -390 5731 5536 21 36 0 0 chr11 24433943 24433971 -124349501 + AT_rich Low_complexity Low_complexity 1 28 0 365 229 42 17 chr11 24434130 24434248 -124349224 + L1 LINE L1 4126 4246 -1900 417 149 11 69 chr11 24434261 24434348 -124349124 - MER30 DNA MER1_type -31 199 118 4301 179 59 6 chr11 24434451 24435870 -124347602 + L1PA16 LINE L1 4609 6106 -60 23 78 0 0 chr11 24435907 24435958 -124347514 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr11 24436595 24436617 -124346855 + AT_rich Low_complexity Low_complexity 1 22 0 201 338 29 0 chr11 24436865 24436933 -124346539 + MIR SINE MIR 47 116 -146 245 325 94 8 chr11 24438223 24438340 -124345132 + MIR SINE MIR 2 128 -134 1412 184 8 106 chr11 24438359 24438745 -124344727 - MLT1A1 LTR MaLR -17 348 1 225 269 0 0 chr11 24441118 24441170 -124342302 + T-rich Low_complexity Low_complexity 5 56 0 24 0 0 0 chr11 24442276 24442300 -124341172 + AT_rich Low_complexity Low_complexity 1 24 0 190 309 44 15 chr11 24442655 24442723 -124340749 + L2 LINE L2 2893 2962 -352 3211 180 43 47 chr11 24442851 24443574 -124339898 + LTR8A LTR ERV1 1 720 -7 229 299 47 56 chr11 24443640 24443747 -124339725 + L2 LINE L2 3204 3309 -4 1205 164 66 9 chr11 24443749 24443975 -124339497 + MER2 DNA MER2_type 106 344 -1 593 288 48 48 chr11 24445198 24445427 -124338045 - MIR SINE MIR -27 235 7 457 273 96 43 chr11 24445950 24446159 -124337313 - MIR SINE MIR 0 262 43 615 252 27 141 chr11 24446393 24446467 -124337005 + MER69 DNA AcHobo 512 593 -1933 1787 174 51 8 chr11 24446467 24446823 -124336649 + THE1C LTR MaLR 5 375 0 615 252 27 141 chr11 24446823 24447188 -124336284 + MER69 DNA AcHobo 593 901 -1625 2237 88 0 3 chr11 24447202 24447498 -124335974 + AluY SINE Alu 1 295 -16 422 33 33 0 chr11 24447520 24447580 -124335892 + L1P2 LINE L1 5456 5517 -637 24 0 0 0 chr11 24498210 24498234 -124285238 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr11 24498393 24498416 -124285056 + AT_rich Low_complexity Low_complexity 1 23 0 241 318 65 55 chr11 24498465 24498682 -124284790 - MIR SINE MIR -26 236 18 594 267 6 25 chr11 24499025 24499186 -124284286 + MIR SINE MIR 105 262 0 1719 139 164 6 chr11 24499803 24500162 -124283310 + MSTA LTR MaLR 1 416 -12 2631 214 107 56 chr11 24500266 24501420 -124282052 + L1MCb LINE L1 71 1306 -4866 5279 152 20 13 chr11 24501784 24502681 -124280791 + Tigger2 DNA MER2_type 1813 2715 -3 624 194 7 0 chr11 24504606 24504750 -124278722 + L1MA9 LINE L1 6166 6310 -2 1752 187 13 7 chr11 24504772 24505082 -124278390 + AluJb SINE Alu 1 312 0 8250 28 4 0 chr11 24506880 24508271 -124275201 - L1P1 LINE L1 -405 5750 4353 22 70 0 0 chr11 24508753 24508796 -124274676 + AT_rich Low_complexity Low_complexity 1 43 0 1460 164 67 22 chr11 24508800 24509069 -124274403 + AluJo SINE Alu 3 283 -29 200 311 14 27 chr11 24509699 24509773 -124273699 - MIR3 SINE MIR -130 78 6 263 272 89 29 chr11 24510810 24510977 -124272495 + MIR SINE MIR 13 248 -14 1639 152 37 4 chr11 24511074 24511343 -124272129 + AluJb SINE Alu 1 278 -34 180 27 81 0 chr11 24512153 24512190 -124271282 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 457 214 0 16 chr11 24512212 24512394 -124271078 + (TA)n Simple_repeat Simple_repeat 2 180 0 317 250 11 11 chr11 24512404 24512492 -124270980 + L1MC4 LINE L1 6615 6702 -1340 217 228 33 11 chr11 24512511 24512603 -124270869 + (TCTA)n Simple_repeat Simple_repeat 2 95 0 1572 121 0 16 chr11 24512682 24512930 -124270542 + L1PA13 LINE L1 5777 6020 -143 528 266 14 0 chr11 24513100 24513239 -124270233 + FLAM_C SINE Alu 1 141 -2 10210 43 30 0 chr11 24514477 24516145 -124267327 - L1P2 LINE L1 -427 5727 4009 232 318 12 12 chr11 24517124 24517209 -124266263 - MIR SINE MIR -110 152 68 424 225 0 0 chr11 24517404 24517475 -124265997 - FRAM SINE Alu -35 141 71 362 98 0 0 chr11 24517854 24517905 -124265567 + MSTA LTR MaLR 378 428 0 4829 197 41 18 chr11 24517905 24518388 -124265084 + MSTA-int LTR MaLR 1 471 -1180 2661 23 3 0 chr11 24518388 24518690 -124264782 + AluYa5 SINE Alu 1 303 -8 4829 197 41 18 chr11 24518690 24519206 -124264266 + MSTA-int LTR MaLR 471 1023 -628 404 228 120 44 chr11 24520556 24520714 -124262758 + L1M4 LINE L1 4092 4261 -1885 2391 191 13 9 chr11 24520834 24521289 -124262183 - MER39B LTR ERV1 -194 459 3 566 270 90 5 chr11 24521769 24521969 -124261503 - L2 LINE L2 -1638 1676 1460 334 307 18 18 chr11 24522907 24523021 -124260451 + MIR3 SINE MIR 64 177 -31 647 297 57 11 chr11 24523518 24523888 -124259584 + L1MEc LINE L1 1693 2079 -4317 279 286 17 25 chr11 24523931 24524050 -124259422 + L1ME1 LINE L1 1646 1763 -4633 2369 265 39 23 chr11 24524075 24524912 -124258560 + L1ME1 LINE L1 5367 6217 -18 771 224 64 113 chr11 24524943 24525106 -124258366 + L1ME1 LINE L1 5792 5961 -205 2852 6 0 0 chr11 24525106 24525417 -124258055 + AluYa5 SINE Alu 1 311 0 771 224 64 113 chr11 24525417 24525642 -124257830 + L1ME1 LINE L1 5961 6161 -5 792 102 81 1 chr11 24525880 24526015 -124257457 + THE1C LTR MaLR 200 407 -25 22 35 0 0 chr11 24526133 24526162 -124257310 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr11 24526695 24526730 -124256742 + AT_rich Low_complexity Low_complexity 1 35 0 2065 138 127 21 chr11 24527165 24527501 -124255971 + MSTA LTR MaLR 3 387 -41 2241 111 80 9 chr11 24527501 24527851 -124255621 + THE1C LTR MaLR 1 375 0 2065 138 127 21 chr11 24527851 24527899 -124255573 + MSTA LTR MaLR 387 428 0 567 115 0 0 chr11 24527914 24527992 -124255480 - THE1B LTR MaLR 0 364 287 3034 103 20 5 chr11 24527996 24528434 -124255038 - MLT2A2 LTR ERVL -8 445 1 1901 121 10 30 chr11 24528434 24528731 -124254741 - THE1B LTR MaLR -73 291 1 7696 175 162 7 chr11 24528731 24530097 -124253375 - THE1B-int LTR MaLR 0 1580 3 355 122 0 0 chr11 24530101 24530150 -124253322 - THE1B LTR MaLR -2 353 305 1038 228 0 0 chr11 24530150 24530339 -124253133 + L1PA12 LINE L1 1304 1492 -6089 427 167 0 13 chr11 24530342 24530420 -124253052 + MER30 DNA MER1_type 115 191 -39 553 319 0 0 chr11 24530437 24530603 -124252869 + L1PA12 LINE L1 1 166 -7415 5012 241 19 17 chr11 24530632 24532029 -124251443 + L1PA12 LINE L1 2301 3700 -3884 414 206 59 10 chr11 24533156 24533258 -124250214 + MLT1D LTR MaLR 3 109 -396 377 286 16 56 chr11 24533332 24533458 -124250014 - L2 LINE L2 0 3313 3193 233 318 73 47 chr11 24533598 24533790 -124249682 - L2 LINE L2 0 3313 3117 1156 310 74 27 chr11 24533905 24534570 -124248902 - L2 LINE L2 -299 3014 2231 555 348 61 51 chr11 24534631 24535003 -124248469 - L2 LINE L2 -276 3037 2658 280 174 0 0 chr11 24535127 24535173 -124248299 + MER52C LTR ERV1 427 472 -806 * 2469 115 211 41 chr11 24535172 24535684 -124247788 + MER52C LTR ERV1 680 1278 0 315 0 0 0 chr11 24535753 24535788 -124247684 + (TC)n Simple_repeat Simple_repeat 2 36 0 519 311 34 24 chr11 24536092 24536298 -124247174 + MLT1J2 LTR MaLR 1 208 -242 330 220 77 22 chr11 24536623 24536714 -124246758 + Zaphod DNA AcHobo 3935 4030 -1 517 297 55 31 chr11 24537205 24537753 -124245719 + L1MCc LINE L1 1354 1917 -4957 184 75 25 25 chr11 24537801 24537841 -124245631 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 424 290 15 7 chr11 24537856 24538036 -124245436 + L1M4 LINE L1 5567 5748 -414 357 93 0 0 chr11 24538135 24538189 -124245283 + (CA)n Simple_repeat Simple_repeat 1 54 0 303 301 91 6 chr11 24538203 24538379 -124245093 + L1MCc LINE L1 2089 2279 -4662 3130 186 35 17 chr11 24538480 24539082 -124244390 + MSTB-int LTR MaLR 1039 1651 0 1846 195 74 2 chr11 24539082 24539476 -124243996 + MSTB LTR MaLR 1 422 -4 2106 147 15 27 chr11 24539479 24539887 -124243585 + L1MA6 LINE L1 5898 6300 0 3071 219 69 21 chr11 24539949 24540974 -124242498 + L1MB7 LINE L1 5108 6184 0 21 0 0 0 chr11 24541407 24541428 -124242044 + AT_rich Low_complexity Low_complexity 1 21 0 314 258 41 0 chr11 24542129 24542226 -124241246 - L1M4 LINE L1 -2241 3905 3805 1069 231 30 7 chr11 24542253 24542522 -124240950 + MLT1D LTR MaLR 227 501 -4 1519 192 21 10 chr11 24542529 24542820 -124240652 + AluJo SINE Alu 1 294 -18 204 217 0 0 chr11 24543842 24543888 -124239584 + (CA)n Simple_repeat Simple_repeat 1 46 0 22 35 0 0 chr11 24544039 24544068 -124239404 + AT_rich Low_complexity Low_complexity 1 29 0 6265 168 21 15 chr11 24546117 24548207 -124235265 - L1PA8A LINE L1 -2 6129 4122 10501 166 5 9 chr11 24548207 24548547 -124234925 + L1P LINE L1 2100 2440 -3706 2353 81 0 7 chr11 24548547 24548845 -124234627 + AluY SINE Alu 1 296 -15 10501 166 5 9 chr11 24548845 24550443 -124233029 + L1P LINE L1 2440 4029 -2117 737 78 0 142 chr11 24550543 24550684 -124232788 + L1P LINE L1 4004 4124 -2022 2712 168 31 4 chr11 24550708 24551251 -124232221 - L1MA4 LINE L1 -6 6294 5737 3099 118 28 2 chr11 24551251 24551724 -124231748 + LTR15 LTR ERV1 3 487 -6 715 185 0 8 chr11 24551730 24551860 -124231612 - L1MA4 LINE L1 -558 5742 5614 * 1478 228 31 10 chr11 24551858 24552274 -124231198 + L1 LINE L1 4920 5344 -802 1694 162 33 12 chr11 24552275 24552609 -124230863 + L1M1 LINE L1 5282 5622 -678 23 78 0 0 chr11 24552835 24552886 -124230586 + AT_rich Low_complexity Low_complexity 1 51 0 1267 189 158 25 chr11 24553266 24553588 -124229884 - MLT1A1 LTR MaLR 0 365 1 2152 120 0 16 chr11 24554158 24554466 -124229006 + AluSq SINE Alu 1 303 -10 181 265 41 0 chr11 24555692 24555741 -124227731 - L2 LINE L2 -337 2976 2926 7605 172 11 30 chr11 24555890 24557911 -124225561 - L1PA8A LINE L1 -178 5953 3982 3506 181 15 1 chr11 24557909 24558583 -124224889 - L1PA8A LINE L1 -2924 3222 2540 * 613 282 110 22 chr11 24558745 24559018 -124224454 - LTR16C LTR ERVL -8 483 187 2542 137 5 27 chr11 24559294 24559732 -124223740 + MSTA LTR MaLR 1 428 0 182 325 83 42 chr11 24559792 24559912 -124223560 - L2 LINE L2 -1 3271 3147 27 87 0 0 chr11 24559912 24559981 -124223491 + AT_rich Low_complexity Low_complexity 1 69 0 889 236 144 31 chr11 24560126 24560453 -124223019 - MLT1E1 LTR MaLR -290 364 1 223 300 22 22 chr11 24560664 24560754 -124222718 - L2 LINE L2 0 3313 3224 312 219 0 0 chr11 24561275 24561348 -124222124 - MER4C LTR ERV1 -116 349 277 2328 91 49 104 chr11 24561364 24561814 -124221658 - MER4A LTR ERV1 -239 425 1 23 54 0 0 chr11 24561964 24562001 -124221471 + AT_rich Low_complexity Low_complexity 1 37 0 228 372 23 0 chr11 24562546 24562632 -124220840 + L2 LINE L2 3224 3311 -2 246 314 137 8 chr11 24563265 24563389 -124220083 - MIR3 SINE MIR -10 198 59 1724 46 5 0 chr11 24564124 24564343 -124219129 + L1PA4 LINE L1 5933 6152 -3 209 349 101 7 chr11 24564941 24565090 -124218382 + MIR SINE MIR 22 184 -78 1694 188 7 3 chr11 24565808 24566101 -124217371 - AluJb SINE Alu -18 294 1 1827 288 58 32 chr11 24566144 24566507 -124216965 - L1M4 LINE L1 -1677 4469 4117 2022 102 7 4 chr11 24566507 24566782 -124216690 + AluSq SINE Alu 31 306 -7 1827 288 58 32 chr11 24566782 24567390 -124216082 - L1M4 LINE L1 -2029 4117 3473 824 235 50 16 chr11 24567466 24567765 -124215707 + MLT2B1 LTR ERVL 1 351 -46 180 77 0 0 chr11 24567765 24567791 -124215681 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 824 235 50 16 chr11 24567791 24567823 -124215649 + MLT2B1 LTR ERVL 351 380 -17 4511 145 50 3 chr11 24569510 24570282 -124213190 + L1PB4 LINE L1 5336 6144 -12 941 259 127 51 chr11 24570886 24571375 -124212097 + MLT1E3 LTR MaLR 52 596 -28 21 36 0 0 chr11 24572030 24572058 -124211414 + AT_rich Low_complexity Low_complexity 1 28 0 5798 117 22 7 chr11 24572058 24573354 -124210118 - L1PA14 LINE L1 -2 6159 4850 548 262 82 19 chr11 24573878 24574084 -124209388 + L1ME2 LINE L1 5924 6142 -22 243 0 0 0 chr11 24574302 24574329 -124209143 + (TA)n Simple_repeat Simple_repeat 1 27 0 1335 203 0 19 chr11 24574388 24574649 -124208823 + AluJo SINE Alu 1 256 -56 485 291 37 53 chr11 24574945 24575134 -124208338 - MIR SINE MIR -34 228 43 562 287 116 36 chr11 24576688 24576939 -124206533 - L2 LINE L2 -18 3295 3025 248 353 173 0 chr11 24577744 24577877 -124205595 + L2 LINE L2 3112 3267 -5 11505 279 42 29 chr11 24578439 24581776 -124201696 + L1PA12 LINE L1 1536 4828 -2756 1731 131 16 72 chr11 24581776 24582096 -124201376 + AluSx SINE Alu 1 302 -10 11505 279 42 29 chr11 24582096 24583049 -124200423 + L1PA12 LINE L1 4828 5767 -1817 2253 152 6 3 chr11 24583049 24583410 -124200062 - THE1B LTR MaLR 0 364 3 9676 118 35 32 chr11 24583412 24584988 -124198484 - THE1B-int LTR MaLR 0 1580 1 2347 141 6 0 chr11 24584988 24585350 -124198122 - THE1B LTR MaLR 0 364 1 11505 279 42 29 chr11 24585350 24586291 -124197181 + L1PA12 LINE L1 5766 6785 -799 998 283 55 19 chr11 24586344 24586757 -124196715 + L1M4 LINE L1 4545 4978 -1168 2122 131 57 20 chr11 24586757 24587108 -124196364 + THE1B LTR MaLR 1 364 0 998 283 55 19 chr11 24587108 24587164 -124196308 + L1M4 LINE L1 4978 5031 -1115 3447 175 11 21 chr11 24587254 24587968 -124195504 + L1MB3 LINE L1 5476 6182 -1 482 287 57 14 chr11 24587980 24588259 -124195213 + L1M4 LINE L1 5016 5306 -840 1282 278 65 15 chr11 24588310 24588713 -124194759 + MLT2F LTR ERVL 178 600 -63 285 323 32 0 chr11 24589634 24589727 -124193745 + MIR SINE MIR 45 140 -68 2124 112 3 0 chr11 24590846 24591141 -124192331 + AluSg SINE Alu 1 296 -14 482 160 0 0 chr11 24591223 24591298 -124192174 + AluJ/FLAM SINE Alu 1 75 -237 305 317 0 30 chr11 24591590 24591691 -124191781 + MLT1F LTR MaLR 86 183 -407 513 228 88 18 chr11 24591816 24591987 -124191485 + MLT1F LTR MaLR 354 536 -6 231 383 13 13 chr11 24591994 24592143 -124191329 + MLT1F-int LTR MaLR 2 150 -1221 375 335 34 38 chr11 24592144 24592407 -124191065 + MLT1F-int LTR MaLR 299 560 -811 2133 81 57 7 chr11 24592527 24592823 -124190649 + AluY SINE Alu 1 311 0 634 162 43 0 chr11 24593462 24593579 -124189893 - L1 LINE L1 -1335 4811 4690 610 114 0 0 chr11 24593648 24593736 -124189736 + L1M2 LINE L1 5641 5728 -572 2062 128 3 0 chr11 24593979 24594269 -124189203 - AluSx SINE Alu -1 311 21 21 89 0 0 chr11 24594970 24595026 -124188446 + AT_rich Low_complexity Low_complexity 1 56 0 25 31 0 0 chr11 24596776 24596808 -124186664 + AT_rich Low_complexity Low_complexity 1 32 0 9955 181 52 23 chr11 24596842 24598950 -124184522 + L1M4c LINE L1 15 2184 -4200 797 198 19 53 chr11 24598952 24599159 -124184313 + MLT1A1 LTR MaLR 1 200 -165 189 74 0 0 chr11 24599321 24599348 -124184124 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1944 170 123 8 chr11 24599455 24599838 -124183634 - MSTA LTR MaLR 0 428 2 312 324 73 22 chr11 24600113 24600249 -124183223 + MIR SINE MIR 34 176 -86 540 206 42 32 chr11 24600888 24601077 -124182395 + HsTC2 DNA Tc2 1598 1788 -110 21 0 0 0 chr11 24602381 24602402 -124181070 + AT_rich Low_complexity Low_complexity 1 21 0 1639 157 27 7 chr11 24602982 24603281 -124180191 + L1PA16 LINE L1 5861 6165 -1 208 258 140 43 chr11 24603614 24603707 -124179765 - L3 LINE CR1 -116 1461 1360 1449 215 37 17 chr11 24603961 24604315 -124179157 + MLT1A1 LTR MaLR 1 365 0 305 287 44 59 chr11 24605082 24605342 -124178130 + MIR SINE MIR 26 237 -25 189 74 0 0 chr11 24605533 24605560 -124177912 + (CA)n Simple_repeat Simple_repeat 2 28 0 1228 206 60 122 chr11 24605795 24606329 -124177143 - MER67D LTR ERV1 -8 506 6 231 295 95 21 chr11 24606392 24606487 -124176985 + MIR SINE MIR 88 189 -73 24 0 0 0 chr11 24606878 24606902 -124176570 + AT_rich Low_complexity Low_complexity 1 24 0 899 251 172 39 chr11 24607776 24608218 -124175254 + MLT1D LTR MaLR 5 505 0 1413 121 24 0 chr11 24608937 24609143 -124174329 - AluSx SINE Alu -101 211 1 22 0 7 0 chr11 24609152 24609207 -124174265 + AT_rich Low_complexity Low_complexity 1 22 0 323 300 65 33 chr11 24610032 24610462 -124173010 + L1MEc LINE L1 1041 1484 -4912 309 118 0 0 chr11 24610511 24610562 -124172910 + Alu SINE Alu 252 302 0 324 229 14 0 chr11 24611316 24611386 -124172086 - MIR SINE MIR -110 152 82 1797 140 4 0 chr11 24611390 24611655 -124171817 + AluSq SINE Alu 1 266 -47 251 121 17 0 chr11 24611667 24611725 -124171747 + (CAA)n Simple_repeat Simple_repeat 2 60 0 196 235 78 0 chr11 24611772 24611823 -124171649 - MIR SINE MIR -21 241 187 1783 236 51 73 chr11 24612606 24613275 -124170197 + MLT1E1 LTR MaLR 1 654 0 2240 103 17 0 chr11 24613420 24613721 -124169751 - AluSq SINE Alu -7 306 1 204 40 0 0 chr11 24613866 24613891 -124169581 + (TG)n Simple_repeat Simple_repeat 1 25 0 414 304 83 35 chr11 24613940 24614352 -124169120 - L1M4 LINE L1 -2202 3944 3486 1783 117 4 8 chr11 24614352 24614617 -124168855 + AluSx SINE Alu 36 299 -13 414 304 83 35 chr11 24614617 24614669 -124168803 - L1M4 LINE L1 -2660 3486 3438 1487 271 110 34 chr11 24614952 24615318 -124168154 + L1ME3A LINE L1 5255 5592 -578 387 0 0 0 chr11 24615318 24615361 -124168111 + (CA)n Simple_repeat Simple_repeat 1 43 0 1487 271 110 34 chr11 24615361 24615564 -124167908 + L1ME3A LINE L1 5592 5778 -392 2234 139 104 28 chr11 24615564 24615996 -124167476 - MER4C LTR ERV1 0 465 1 1487 271 110 34 chr11 24615996 24616251 -124167221 + L1ME3A LINE L1 5778 6143 -27 423 237 82 55 chr11 24616277 24616496 -124166976 + L1M4 LINE L1 2964 3188 -2958 1602 147 8 4 chr11 24619401 24619659 -124163813 + AluSx SINE Alu 42 300 -12 21 0 0 0 chr11 24620055 24620076 -124163396 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr11 24620159 24620194 -124163278 + AT_rich Low_complexity Low_complexity 1 35 0 1685 238 143 5 chr11 24620198 24620618 -124162854 - MER66A LTR ERV1 0 478 1 213 380 0 28 chr11 24621238 24621346 -124162126 - L2 LINE L2 -17 3255 3151 322 280 233 27 chr11 24621629 24621779 -124161693 - MER5A DNA MER1_type 0 189 9 208 318 0 0 chr11 24621856 24621900 -124161572 + L2 LINE L2 3221 3264 -8 2203 89 0 26 chr11 24622780 24623108 -124160364 - AluY SINE Alu 0 311 1 2731 67 13 0 chr11 24624057 24624448 -124159024 - L1PA5 LINE L1 -2717 3429 3034 15360 43 14 2 chr11 24624448 24627137 -124156335 + L1PA5 LINE L1 3432 6140 -14 3617 59 8 4 chr11 24627237 24627713 -124155759 + L1PA5 LINE L1 5671 6148 -6 423 0 0 0 chr11 24627825 24627872 -124155600 + (CA)n Simple_repeat Simple_repeat 2 48 0 557 168 0 0 chr11 24627944 24628045 -124155427 + L1MA9 LINE L1 6176 6276 -36 25 31 0 0 chr11 24628356 24628388 -124155084 + AT_rich Low_complexity Low_complexity 1 32 0 225 278 0 0 chr11 24628408 24628462 -124155010 + MLT1J2 LTR MaLR 394 447 -3 223 263 12 62 chr11 24629348 24629428 -124154044 + L3b LINE CR1 1504 1579 -4 2362 117 5 48 chr11 24629626 24630020 -124153452 - MER51B LTR ERV1 0 377 1 1363 104 9 28 chr11 24630716 24630928 -124152544 - AluSg/x SINE Alu -10 302 95 1813 181 95 53 chr11 24632990 24633056 -124150416 + LTR38 LTR ERV1 107 169 -387 2205 109 6 10 chr11 24633056 24633368 -124150104 + AluSx SINE Alu 1 311 -1 1813 181 95 53 chr11 24633368 24633733 -124149739 + LTR38 LTR ERV1 169 556 0 293 303 43 32 chr11 24635899 24636087 -124147385 - HAL1 LINE L1 -1160 1347 1158 281 250 75 17 chr11 24636066 24636186 -124147286 - HAL1 LINE L1 -2324 183 57 * 262 333 30 71 chr11 24636480 24636648 -124146824 - L3 LINE CR1 -297 1280 1120 181 176 0 0 chr11 24636900 24636934 -124146538 - L3 LINE CR1 -876 701 668 666 271 114 50 chr11 24638591 24639172 -124144300 + L1ME LINE L1 5052 5671 -499 881 353 61 31 chr11 24639248 24640172 -124143300 + ERVL LTR ERVL 4140 5112 -652 624 308 31 81 chr11 24640634 24641053 -124142419 + LTR16A1 LTR ERVL 60 457 0 405 257 18 9 chr11 24641055 24641164 -124142308 + L1ME3A LINE L1 5616 5725 -445 1400 298 41 34 chr11 24641178 24641769 -124141703 + MLT1G1 LTR MaLR 1 595 0 485 255 150 24 chr11 24641812 24642059 -124141413 + L1ME3A LINE L1 5845 6122 -48 25 31 0 0 chr11 24642282 24642314 -124141158 + AT_rich Low_complexity Low_complexity 1 32 0 1020 230 34 4 chr11 24643094 24643456 -124140016 - MER67C LTR ERV1 -62 648 220 296 406 22 0 chr11 24644088 24644226 -124139246 + MIR SINE MIR 1 141 -121 197 250 75 25 chr11 24644617 24644697 -124138775 - MIR3 SINE MIR -1 207 124 381 273 36 29 chr11 24645806 24645945 -124137527 + LTR41 LTR ERVL 1 140 -633 530 169 49 49 chr11 24646287 24646429 -124137043 + LTR41 LTR ERVL 625 766 -7 819 284 34 29 chr11 24646505 24646744 -124136728 + MIR SINE MIR 18 257 -5 192 200 0 25 chr11 24646860 24646900 -124136572 + L2 LINE L2 3017 3055 -217 247 380 20 27 chr11 24649287 24649437 -124134035 - L2 LINE L2 -220 3052 2904 3446 170 36 68 chr11 24649657 24650491 -124132981 - L1MB1 LINE L1 -5 6163 5357 990 217 21 0 chr11 24650492 24650727 -124132745 + L1MB1 LINE L1 5112 5351 -795 23 0 0 0 chr11 24650736 24650759 -124132713 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr11 24651012 24651041 -124132431 + AT_rich Low_complexity Low_complexity 1 29 0 265 276 0 0 chr11 24651863 24651921 -124131551 + CT-rich Low_complexity Low_complexity 3 60 0 303 175 0 0 chr11 24652050 24652107 -124131365 + (TA)n Simple_repeat Simple_repeat 1 57 0 669 279 100 24 chr11 24653161 24653643 -124129829 - MLT1G1 LTR MaLR -2 593 3 234 314 41 8 chr11 24654519 24654640 -124128832 + MER94 DNA DNA 1 125 -9 12261 207 16 11 chr11 24654640 24658258 -124125214 + L1PA16 LINE L1 6 3527 -3322 4981 245 55 15 chr11 24658257 24659871 -124123601 + L1 LINE L1 3745 5423 -1426 * 1569 143 55 78 chr11 24659871 24660255 -124123217 + THE1C LTR MaLR 1 375 0 8537 148 82 8 chr11 24660255 24661726 -124121746 + THE1C-int LTR MaLR 1 1580 0 1609 133 52 75 chr11 24661726 24662110 -124121362 + THE1C LTR MaLR 1 375 0 2601 199 48 20 chr11 24662121 24663147 -124120325 + L1PA16 LINE L1 5431 6477 -392 1672 159 0 16 chr11 24663148 24663462 -124120010 + L1PA16 LINE L1 6561 6869 0 218 363 12 0 chr11 24663700 24663780 -124119692 + L2 LINE L2 3228 3308 -5 25 0 0 0 chr11 24664078 24664103 -124119369 + AT_rich Low_complexity Low_complexity 1 25 0 227 139 0 0 chr11 24664122 24664158 -124119314 - MLT1I LTR MaLR 0 409 374 1038 257 62 35 chr11 24664354 24664755 -124118717 - MLT1C LTR MaLR -3 464 53 189 0 0 0 chr11 24665339 24665360 -124118112 + (T)n Simple_repeat Simple_repeat 1 21 0 471 313 33 11 chr11 24665370 24665552 -124117920 - LTR16A1 LTR ERVL -5 452 267 260 286 0 0 chr11 24666074 24666151 -124117321 + A-rich Low_complexity Low_complexity 1 77 0 21 57 0 0 chr11 24666597 24666632 -124116840 + AT_rich Low_complexity Low_complexity 1 35 0 365 277 47 34 chr11 24668188 24668336 -124115136 - L1MC4 LINE L1 -1197 6845 6696 2602 230 38 35 chr11 24670565 24671329 -124112143 + L1MA9 LINE L1 5438 6203 -109 832 190 56 11 chr11 24671336 24671515 -124111957 - MER46A DNA MER2_type 0 236 50 793 254 6 0 chr11 24671519 24671692 -124111780 + FAM SINE Alu 2 175 0 603 222 0 22 chr11 24671692 24671827 -124111645 + FLAM_C SINE Alu 2 133 0 422 143 0 0 chr11 24671861 24671924 -124111548 - MER46A DNA MER2_type -173 63 1 276 227 0 0 chr11 24671924 24671990 -124111482 + L1MA9 LINE L1 6209 6274 -38 269 230 70 10 chr11 24672009 24672109 -124111363 + L1M4 LINE L1 4633 4738 -1408 779 148 5 56 chr11 24672156 24672352 -124111120 + L1MA4 LINE L1 6096 6281 -19 25 31 0 0 chr11 24672358 24672390 -124111082 + AT_rich Low_complexity Low_complexity 1 32 0 433 143 0 44 chr11 24672404 24672495 -124110977 + L1MA2 LINE L1 6218 6304 0 977 265 67 17 chr11 24672521 24672982 -124110490 + L1M4 LINE L1 4783 5266 -880 321 294 142 50 chr11 24673699 24673917 -124109555 - MIR SINE MIR -10 252 15 26 30 0 0 chr11 24674109 24674142 -124109330 + AT_rich Low_complexity Low_complexity 1 33 0 1859 144 13 7 chr11 24675294 24675593 -124107879 - AluSx SINE Alu -11 301 1 22 0 0 0 chr11 24676364 24676386 -124107086 + AT_rich Low_complexity Low_complexity 1 22 0 297 356 34 34 chr11 24676464 24676613 -124106859 + MIR3 SINE MIR 33 181 -27 203 231 44 33 chr11 24676645 24676736 -124106736 + CT-rich Low_complexity Low_complexity 3 94 0 227 196 65 0 chr11 24677771 24677817 -124105655 + L2 LINE L2 3263 3311 -2 1840 147 32 0 chr11 24678190 24678475 -124104997 - AluSx SINE Alu -18 294 1 22 0 0 0 chr11 24678561 24678583 -124104889 + AT_rich Low_complexity Low_complexity 1 22 0 6699 36 1 0 chr11 24680086 24680890 -124102582 - L1PA3 LINE L1 -1432 4714 3910 7261 36 10 0 chr11 24680891 24682321 -124101151 + L1PA3 LINE L1 4714 6152 -3 645 227 0 23 chr11 24682387 24682519 -124100953 + FLAM_C SINE Alu 1 129 -4 273 204 20 20 chr11 24682524 24682622 -124100850 + A-rich Low_complexity Low_complexity 3 100 0 249 171 0 0 chr11 24682622 24682663 -124100809 + GA-rich Low_complexity Low_complexity 4 44 0 851 76 0 78 chr11 24682664 24683057 -124100415 + (GGAA)n Simple_repeat Simple_repeat 1 362 0 572 173 218 8 chr11 24683078 24683211 -124100261 + FAM SINE Alu 6 166 -19 23 54 0 0 chr11 24683331 24683368 -124100104 + AT_rich Low_complexity Low_complexity 1 37 0 531 296 16 21 chr11 24683582 24683771 -124099701 - MIR SINE MIR -11 251 64 733 344 121 24 chr11 24684045 24684936 -124098536 - L2 LINE L2 -33 3280 2329 752 217 56 17 chr11 24685464 24685644 -124097828 - MLT1B LTR MaLR -3 387 201 700 341 79 36 chr11 24686038 24686454 -124097018 + L3 LINE CR1 1130 1563 -14 2242 127 16 50 chr11 24687312 24687689 -124095783 - THE1B LTR MaLR 0 364 1 9283 139 11 61 chr11 24687689 24689352 -124094120 - THE1B-int LTR MaLR 0 1580 1 2202 148 22 6 chr11 24689352 24689710 -124093762 - THE1B LTR MaLR 0 364 1 272 337 56 32 chr11 24690138 24690707 -124092765 - L1M4 LINE L1 -1821 4325 3743 384 288 82 17 chr11 24690722 24690955 -124092517 - L1M4 LINE L1 -2984 3162 2915 338 349 136 44 chr11 24691538 24691971 -124091501 + L2 LINE L2 2836 3308 -5 625 290 6 0 chr11 24692664 24692840 -124090632 + MSTD LTR MaLR 1 177 -219 8524 207 27 38 chr11 24692848 24693704 -124089768 - L1PB4 LINE L1 -5 6151 5287 863 90 0 15 chr11 24693704 24693837 -124089635 - L1PA13 LINE L1 -1 6162 6032 8524 207 27 38 chr11 24693837 24695172 -124088300 - L1PB4 LINE L1 -869 5287 3939 4906 96 133 0 chr11 24695172 24695901 -124087571 + LTR12 LTR ERV1 1 826 0 8524 207 27 38 chr11 24695901 24696269 -124087203 - L1PB4 LINE L1 -2217 3939 3568 383 62 31 0 chr11 24696269 24696333 -124087139 + L1PB2 LINE L1 6086 6151 0 8524 207 27 38 chr11 24696333 24696347 -124087125 - L1PB4 LINE L1 -2588 3568 3555 767 238 6 24 chr11 24696347 24696515 -124086957 + FRAM SINE Alu 1 165 -1 8524 207 27 38 chr11 24696515 24697233 -124086239 - L1PB4 LINE L1 -2601 3555 2903 31 0 0 0 chr11 24697783 24697814 -124085658 + AT_rich Low_complexity Low_complexity 1 31 0 236 330 55 0 chr11 24697864 24697980 -124085492 + MIR SINE MIR 36 157 -51 22 35 0 0 chr11 24699356 24699385 -124084087 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr11 24699511 24699547 -124083925 + AT_rich Low_complexity Low_complexity 1 36 0 1588 205 27 67 chr11 24699732 24700137 -124083335 - MLT1B LTR MaLR 0 390 2 1142 150 0 0 chr11 24700628 24700801 -124082671 - AluSg/x SINE Alu -2 310 138 303 93 0 0 chr11 24700945 24700988 -124082484 + (T)n Simple_repeat Simple_repeat 1 43 0 200 233 17 0 chr11 24701555 24701615 -124081857 + (TA)n Simple_repeat Simple_repeat 1 61 0 2146 123 0 0 chr11 24702990 24703283 -124080189 + AluSc SINE Alu 3 295 -14 22 35 0 0 chr11 24703689 24703718 -124079754 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr11 24704973 24705002 -124078470 + AT_rich Low_complexity Low_complexity 1 29 0 504 294 46 42 chr11 24705004 24705596 -124077876 - L1ME3A LINE L1 -135 6035 5294 22 0 0 0 chr11 24706218 24706240 -124077232 + AT_rich Low_complexity Low_complexity 1 22 0 326 285 65 8 chr11 24706323 24706446 -124077026 + MIR SINE MIR 71 200 -62 607 311 63 8 chr11 24708441 24708679 -124074793 + MIR SINE MIR 12 262 0 4212 212 28 27 chr11 24709150 24710607 -124072865 - L1P4 LINE L1 -489 6327 4879 * 4265 281 33 39 chr11 24710591 24711330 -124072142 - L1P4 LINE L1 -2782 4015 3273 2186 145 71 22 chr11 24711330 24711535 -124071937 + MSTA LTR MaLR 1 195 -233 243 0 0 0 chr11 24711535 24711562 -124071910 + (TC)n Simple_repeat Simple_repeat 1 27 0 2186 145 71 22 chr11 24711562 24711764 -124071708 + MSTA LTR MaLR 195 428 0 4265 281 33 39 chr11 24711764 24712545 -124070927 - L1P4 LINE L1 -3524 3273 2489 1923 81 97 4 chr11 24712545 24712843 -124070629 - AluY SINE Alu 0 322 1 4265 281 33 39 chr11 24712843 24714669 -124068803 - L1P4 LINE L1 -4308 2489 2 348 242 172 0 chr11 24714669 24714768 -124068704 - MLT1A2 LTR MaLR -244 130 15 376 172 11 0 chr11 24714865 24714952 -124068520 - L1ME3A LINE L1 -1096 5050 4963 446 0 19 0 chr11 24715366 24715420 -124068052 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 1512 28 6 0 chr11 24715701 24715880 -124067592 + AluY SINE Alu 128 307 -4 1143 253 118 45 chr11 24715893 24716360 -124067112 + MLT1D LTR MaLR 5 505 0 188 400 0 0 chr11 24716635 24716715 -124066757 - MER5B DNA MER1_type -98 80 1 1106 324 47 50 chr11 24718051 24719150 -124064322 + L1PA16 LINE L1 8 2183 -5398 12256 240 36 26 chr11 24719383 24723208 -124060264 + L1PA16 LINE L1 2182 5969 -1635 1966 205 43 80 chr11 24723208 24723783 -124059689 + MLT2B3 LTR ERVL 1 554 0 12256 240 36 26 chr11 24723783 24724738 -124058734 + L1PA16 LINE L1 5969 7035 -569 1918 104 11 3 chr11 24724738 24725025 -124058447 - AluSq SINE Alu -24 289 1 12256 240 36 26 chr11 24725025 24725591 -124057881 + L1PA16 LINE L1 7035 7594 -10 370 77 0 0 chr11 24725859 24725911 -124057561 - L1PA6 LINE L1 0 6154 6103 273 282 14 0 chr11 24725911 24725982 -124057490 + MER94 DNA DNA 7 78 -56 220 348 170 4 chr11 24726208 24726461 -124057011 + L2 LINE L2 3019 3313 0 397 192 39 15 chr11 24727664 24727794 -124055678 + CT-rich Low_complexity Low_complexity 4 136 0 22 0 0 0 chr11 24728378 24728400 -124055072 + AT_rich Low_complexity Low_complexity 1 22 0 297 324 35 21 chr11 24728681 24728823 -124054649 - MIR SINE MIR -26 236 93 1219 298 86 19 chr11 24729574 24729723 -124053749 - L1ME3A LINE L1 -9 6161 6023 2027 101 18 0 chr11 24729723 24730038 -124053434 + AluSx SINE Alu 1 320 0 1219 298 86 19 chr11 24730038 24730455 -124053017 - L1ME3A LINE L1 -147 6023 5556 406 244 30 59 chr11 24730590 24730725 -124052747 - L1MDa LINE L1 -6328 212 82 21 0 0 0 chr11 24731117 24731138 -124052334 + AT_rich Low_complexity Low_complexity 1 21 0 13592 35 2 5 chr11 24731785 24733507 -124049965 - L1P LINE L1 -2440 3706 1990 1304 221 63 20 chr11 24734152 24734530 -124048942 - MLT1B LTR MaLR 0 390 4 257 340 31 10 chr11 24734568 24734665 -124048807 - L2 LINE L2 -6 3266 3168 1619 285 105 31 chr11 24735336 24736514 -124046958 - L1ME2 LINE L1 -2 6162 4845 2443 160 24 7 chr11 24736514 24736932 -124046540 - MER61B LTR ERV1 0 425 1 1619 285 105 31 chr11 24736932 24737224 -124046248 - L1ME2 LINE L1 -1319 4845 4576 621 284 132 24 chr11 24737274 24737856 -124045616 - L1ME2 LINE L1 -2129 4017 3373 21 0 0 0 chr11 24738009 24738030 -124045442 + AT_rich Low_complexity Low_complexity 1 21 0 2354 76 0 16 chr11 24738756 24739071 -124044401 - AluY SINE Alu -1 310 1 31 58 0 0 chr11 24739494 24739546 -124043926 + AT_rich Low_complexity Low_complexity 1 52 0 768 164 63 6 chr11 24739546 24739705 -124043767 - L1MA7 LINE L1 -48 6243 6076 2005 277 55 38 chr11 24740352 24741594 -124041878 - L1M1 LINE L1 -4159 3407 2264 708 313 65 52 chr11 24742020 24742480 -124040992 - L1M1 LINE L1 -5813 1683 1218 5351 173 69 20 chr11 24742513 24743009 -124040463 + Tigger3b DNA MER2_type 2 472 -2556 2367 43 23 13 chr11 24743009 24743310 -124040162 - AluY SINE Alu -7 304 1 5351 173 69 20 chr11 24743310 24743986 -124039486 + Tigger3b DNA MER2_type 472 1231 0 1801 232 54 22 chr11 24744306 24744845 -124038627 + LTR38 LTR ERV1 1 556 0 338 352 55 40 chr11 24795324 24795722 -123987750 + L2 LINE L2 2244 2647 -667 2426 93 0 3 chr11 24795939 24796252 -123987220 + AluSp SINE Alu 1 312 -1 199 287 85 53 chr11 24797346 24797440 -123986032 + MER5A DNA MER1_type 7 103 -86 228 135 0 0 chr11 24797473 24797510 -123985962 + (TG)n Simple_repeat Simple_repeat 2 38 0 251 203 0 0 chr11 24797518 24797582 -123985890 - L1MC4 LINE L1 -1339 6703 6640 518 309 206 36 chr11 24797843 24798371 -123985101 + MLT2F LTR ERVL 1 618 -45 1756 163 53 14 chr11 24798446 24798807 -123984665 - THE1C LTR MaLR 0 375 1 3343 126 34 13 chr11 24798814 24799371 -123984101 - THE1C-int LTR MaLR -7 1573 1005 768 107 57 0 chr11 24799654 24799776 -123983696 + HERVK14 LTR ERVK 4272 4400 -1545 * 3209 64 30 1 chr11 24799775 24800433 -123983039 + HERVK14 LTR ERVK 5013 5759 -186 314 206 0 18 chr11 24800433 24800508 -123982964 + MER41C LTR ERV1 1 61 -493 524 58 66 157 chr11 24800509 24800630 -123982842 + HERVK14 LTR ERVK 5836 5945 0 4385 70 39 3 chr11 24800633 24801220 -123982252 + LTR14B LTR ERVK 1 608 0 331 352 0 0 chr11 24801231 24801339 -123982133 - LTR16C LTR ERVL -316 175 68 369 342 32 21 chr11 24801407 24801594 -123981878 - MIR SINE MIR -63 199 11 271 423 0 7 chr11 24802217 24802359 -123981113 + L2 LINE L2 2831 2971 -301 600 257 75 7 chr11 24802362 24802654 -123980818 + L1ME1 LINE L1 4019 4330 -1816 6141 260 26 13 chr11 24802657 24805590 -123977882 - L1PA12 LINE L1 -2324 5260 2264 309 356 49 26 chr11 24806208 24806593 -123976879 - L1PA12 LINE L1 -6202 1372 979 827 262 187 22 chr11 24806611 24807156 -123976316 + L1ME1 LINE L1 4635 5269 -877 241 211 0 77 chr11 24807166 24807270 -123976202 + L1MC4 LINE L1 6614 6709 -1333 1451 257 66 59 chr11 24807289 24808133 -123975339 + L1ME1 LINE L1 5281 6165 -1 892 333 71 2 chr11 24809186 24809606 -123973866 - LTR16B LTR ERVL -11 453 5 1146 329 57 30 chr11 24809908 24811086 -123972386 - HERV16 LTR ERVL -3423 1573 355 1267 292 33 9 chr11 24811381 24811830 -123971642 - LTR16B LTR ERVL -4 460 1 184 364 15 0 chr11 24812324 24812390 -123971082 + L2 LINE L2 3247 3313 0 21 89 0 0 chr11 24812765 24812821 -123970651 + AT_rich Low_complexity Low_complexity 1 56 0 21 0 0 0 chr11 24814276 24814297 -123969175 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 24814385 24814406 -123969066 + AT_rich Low_complexity Low_complexity 1 21 0 2351 133 11 6 chr11 24814558 24814920 -123968552 - THE1B LTR MaLR 0 364 1 192 77 0 0 chr11 24815363 24815389 -123968083 + (TCCCC)n Simple_repeat Simple_repeat 5 30 0 647 132 40 29 chr11 24815393 24815567 -123967905 + CT-rich Low_complexity Low_complexity 3 178 0 212 129 0 0 chr11 24815571 24815602 -123967870 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 412 284 86 75 chr11 24815603 24815895 -123967577 - L1MC4 LINE L1 -977 7065 6771 660 345 105 20 chr11 24816111 24816560 -123966912 - L2 LINE L2 -1 3312 2826 195 271 62 0 chr11 24818090 24818138 -123965334 - L2 LINE L2 -74 3239 3189 25 0 0 0 chr11 24819474 24819499 -123963973 + AT_rich Low_complexity Low_complexity 1 25 0 1586 221 67 81 chr11 24819709 24820230 -123963242 - MLT2B2 LTR ERVL 0 515 2 254 253 135 18 chr11 24820245 24820415 -123963057 - L1ME LINE L1 -306 5815 5626 636 253 10 35 chr11 24821022 24821220 -123962252 - MER3 DNA MER1_type -4 205 13 23 33 0 0 chr11 24823196 24823226 -123960246 + AT_rich Low_complexity Low_complexity 1 30 0 218 342 41 66 chr11 24823341 24823537 -123959935 - L2 LINE L2 -221 3051 2861 267 257 43 0 chr11 24823968 24824038 -123959434 - L2 LINE L2 -2 3270 3198 277 328 101 0 chr11 24824253 24824372 -123959100 - L2 LINE L2 -1 3312 3182 250 299 186 10 chr11 24825405 24825502 -123957970 - L2 LINE L2 0 3313 3200 22 56 0 0 chr11 24826429 24826465 -123957007 + AT_rich Low_complexity Low_complexity 1 36 0 447 125 0 0 chr11 24826477 24826541 -123956931 - AluS SINE Alu -240 70 7 489 256 0 17 chr11 24827141 24827258 -123956214 - L1M3 LINE L1 -562 5772 5658 1713 163 22 22 chr11 24827267 24827628 -123955844 + L1MA10 LINE L1 5967 6327 -7 2121 128 3 0 chr11 24827630 24827936 -123955536 + AluSx SINE Alu 1 307 -5 23 86 0 0 chr11 24828214 24828272 -123955200 + AT_rich Low_complexity Low_complexity 1 58 0 25 65 0 0 chr11 24828527 24828573 -123954899 + AT_rich Low_complexity Low_complexity 1 46 0 324 276 35 0 chr11 24829083 24829170 -123954302 + MER94 DNA DNA 43 132 -2 533 238 111 6 chr11 24829338 24829519 -123953953 - MIR SINE MIR -25 237 38 272 183 167 33 chr11 24832398 24832518 -123950954 - Charlie7 DNA MER1_type -2443 169 34 1675 199 22 14 chr11 24833154 24833516 -123949956 - MLT1A1 LTR MaLR 0 365 1 215 103 26 0 chr11 24834751 24834790 -123948682 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 189 378 57 10 chr11 24835887 24836080 -123947392 + L2 LINE L2 2437 2638 -676 25 51 0 0 chr11 24836912 24836951 -123946521 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr11 24837694 24837715 -123945757 + AT_rich Low_complexity Low_complexity 1 21 0 190 0 67 0 chr11 24838564 24838594 -123944878 + (TTTTTA)n Simple_repeat Simple_repeat 1 32 0 7157 37 8 0 chr11 24838594 24840003 -123943469 - L1PA4 LINE L1 -1 6154 4730 250 231 19 0 chr11 24840389 24840441 -123943031 + MIR3 SINE MIR 130 182 -26 1272 265 39 48 chr11 24840637 24841098 -123942374 - MLT1C LTR MaLR 0 467 11 344 263 81 0 chr11 24841618 24841717 -123941755 - MIR SINE MIR -87 175 69 2498 172 13 99 chr11 24841813 24842418 -123941054 - MLT2B3 LTR ERVL 0 554 2 21 0 0 0 chr11 24842528 24842549 -123940923 + AT_rich Low_complexity Low_complexity 1 21 0 202 255 123 47 chr11 24842817 24842923 -123940549 - MIR SINE MIR -1 261 148 253 257 99 10 chr11 24843100 24843201 -123940271 - MIR SINE MIR -113 149 40 480 287 83 28 chr11 24843948 24844164 -123939308 + MIR SINE MIR 11 238 -24 423 300 46 21 chr11 24844178 24844458 -123939014 + HAL1 LINE L1 1751 2037 -470 4360 104 222 82 chr11 24844614 24845956 -123937516 - pTR5 LTR ERV1 0 2438 743 1288 275 73 14 chr11 24846592 24847028 -123936444 - MLT1C LTR MaLR 0 467 6 252 181 248 9 chr11 24847038 24847143 -123936329 - MLT1C-int LTR MaLR -5 1366 1237 874 223 23 62 chr11 24847340 24847596 -123935876 + L1ME3 LINE L1 5886 6131 -31 1294 220 9 28 chr11 24847619 24847937 -123935535 + AluJb SINE Alu 1 312 0 204 194 0 32 chr11 24847940 24848002 -123935470 + (TAAA)n Simple_repeat Simple_repeat 2 61 0 33 25 0 0 chr11 24848710 24848750 -123934722 + AT_rich Low_complexity Low_complexity 1 40 0 688 144 96 8 chr11 24848841 24848966 -123934506 + L1PA15-16 LINE L1 1 136 -6713 * 2898 138 21 38 chr11 24848960 24849517 -123933955 + L1PA15-16 LINE L1 1884 2431 -4418 17344 176 74 9 chr11 24849517 24850220 -123933252 + L1PA16 LINE L1 1026 1682 -4484 18896 50 5 2 chr11 24850220 24853430 -123930042 - L1PA5 LINE L1 0 6154 2939 17344 176 74 9 chr11 24853430 24856538 -123926934 + L1PA16 LINE L1 1682 4574 -1592 411 21 0 0 chr11 24856538 24856586 -123926886 + (CA)n Simple_repeat Simple_repeat 1 48 0 17344 176 74 9 chr11 24856586 24858170 -123925302 + L1PA16 LINE L1 4574 6053 -113 206 200 18 73 chr11 24858730 24858785 -123924687 - MER5A DNA MER1_type 0 189 138 1047 264 106 19 chr11 24858930 24859297 -123924175 - LTR16B LTR ERVL -65 399 1 554 244 76 8 chr11 24859297 24859428 -123924044 - MER5A DNA MER1_type -43 146 7 699 266 30 15 chr11 24860882 24861085 -123922387 + MLT1C LTR MaLR 262 467 0 2250 214 34 84 chr11 24861085 24861753 -123921719 + MLT1C-int LTR MaLR 1 635 -736 5577 58 0 0 chr11 24861804 24862517 -123920955 - L1P LINE L1 -1128 5018 4306 217 320 53 73 chr11 24862789 24862939 -123920533 - MIR SINE MIR -113 149 3 368 336 107 77 chr11 24863735 24864342 -123919130 + L2 LINE L2 2077 2701 -613 22 94 0 0 chr11 24864601 24864665 -123918807 + AT_rich Low_complexity Low_complexity 1 64 0 216 167 0 0 chr11 24864988 24865024 -123918448 + (CA)n Simple_repeat Simple_repeat 2 37 0 2003 130 0 0 chr11 24865258 24865629 -123917843 - AluSx SINE Alu 0 371 1 181 274 65 16 chr11 24865645 24865707 -123917765 + L2 LINE L2 3204 3268 -4 23 101 0 0 chr11 24865806 24865885 -123917587 + AT_rich Low_complexity Low_complexity 1 79 0 351 305 118 21 chr11 24866056 24866243 -123917229 - MIR SINE MIR 0 262 58 25 31 0 0 chr11 24866257 24866289 -123917183 + AT_rich Low_complexity Low_complexity 1 32 0 536 307 99 39 chr11 24866387 24866845 -123916627 - MLT1H1 LTR MaLR 0 555 32 207 69 0 0 chr11 24867201 24867230 -123916242 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr11 24867630 24867653 -123915819 + AT_rich Low_complexity Low_complexity 1 23 0 658 110 50 0 chr11 24867881 24867981 -123915491 - Tigger1 DNA MER2_type -1597 821 717 23 54 0 0 chr11 24867985 24868022 -123915450 + AT_rich Low_complexity Low_complexity 1 37 0 261 247 21 21 chr11 24868384 24868477 -123914995 + GA-rich Low_complexity Low_complexity 2 94 0 385 320 56 15 chr11 24869816 24870013 -123913459 + LTR68 LTR ERV1 208 412 -328 441 0 0 0 chr11 24870274 24870323 -123913149 + (TG)n Simple_repeat Simple_repeat 2 50 0 2354 86 0 10 chr11 24870411 24870715 -123912757 + AluSp SINE Alu 1 301 -12 980 255 136 3 chr11 24871082 24871392 -123912080 + MER110A LTR ERV1 1 351 -117 261 320 102 16 chr11 24871935 24872063 -123911409 + MIR SINE MIR 124 262 0 21 0 0 0 chr11 24872365 24872386 -123911086 + AT_rich Low_complexity Low_complexity 1 21 0 800 206 52 99 chr11 24872545 24872910 -123910562 + LTR37A LTR ERV1 79 426 0 2219 150 31 72 chr11 24873240 24873573 -123909899 + MSTA LTR MaLR 1 346 -82 1909 134 0 77 chr11 24873573 24873938 -123909534 + MER1B DNA MER1_type 1 337 0 2219 150 31 72 chr11 24873938 24873982 -123909490 + MSTA LTR MaLR 346 360 -68 2277 91 7 0 chr11 24873982 24874291 -123909181 + AluSp SINE Alu 1 311 -2 2219 150 31 72 chr11 24874291 24874358 -123909114 + MSTA LTR MaLR 360 428 0 21 0 0 0 chr11 24874874 24874895 -123908577 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 24876272 24876293 -123907179 + AT_rich Low_complexity Low_complexity 1 21 0 462 18 0 0 chr11 24876424 24876479 -123906993 + (CA)n Simple_repeat Simple_repeat 2 56 0 30 0 0 0 chr11 24876693 24876723 -123906749 + AT_rich Low_complexity Low_complexity 1 30 0 372 185 54 9 chr11 24876728 24877051 -123906421 + (TA)n Simple_repeat Simple_repeat 1 337 0 21 0 0 0 chr11 24877193 24877214 -123906258 + AT_rich Low_complexity Low_complexity 1 21 0 377 331 54 0 chr11 24878945 24879075 -123904397 + MIR SINE MIR 55 191 -71 23 68 0 0 chr11 24879422 24879466 -123904006 + AT_rich Low_complexity Low_complexity 1 44 0 23 33 0 0 chr11 24879695 24879725 -123903747 + AT_rich Low_complexity Low_complexity 1 30 0 1351 177 4 35 chr11 24880061 24880321 -123903151 + AluJo SINE Alu 2 253 -59 1419 189 48 22 chr11 24880332 24880645 -123902827 + THE1C LTR MaLR 55 375 0 8594 159 14 37 chr11 24880648 24882262 -123901210 + THE1C-int LTR MaLR 4 1580 0 1343 149 64 34 chr11 24882262 24882557 -123900915 + THE1C LTR MaLR 1 304 -71 22 0 0 0 chr11 24882782 24882804 -123900668 + AT_rich Low_complexity Low_complexity 1 22 0 233 285 118 59 chr11 24882996 24883182 -123900290 - MIR SINE MIR -13 249 53 332 212 12 24 chr11 24883896 24883981 -123899491 + LTR33A LTR ERVL 440 523 0 1340 142 3 154 chr11 24885831 24886208 -123897264 - AluSx SINE Alu 0 327 1 25 65 0 0 chr11 24886369 24886415 -123897057 + AT_rich Low_complexity Low_complexity 1 46 0 264 315 67 55 chr11 24886764 24886929 -123896543 + MER5B DNA MER1_type 4 184 -5 4558 120 14 26 chr11 24887531 24888298 -123895174 - L1MA3 LINE L1 -2 6303 5546 9677 175 35 34 chr11 24888298 24890475 -123892997 - L1M1 LINE L1 -4178 3387 88 303 49 0 0 chr11 24890475 24890516 -123892956 + (TG)n Simple_repeat Simple_repeat 1 41 0 9677 175 35 34 chr11 24890516 24890592 -123892880 - L1M1 LINE L1 -7477 88 14 1054 245 44 26 chr11 24891120 24891504 -123891968 - MER69 DNA AcHobo -42 2484 2094 2342 97 0 3 chr11 24891606 24891914 -123891558 - AluSc SINE Alu -2 307 1 821 233 44 29 chr11 24892300 24892506 -123890966 - MER58A DNA MER1_type -15 209 1 217 345 83 21 chr11 24894108 24894253 -123889219 - MIR SINE MIR 0 262 109 217 286 0 0 chr11 24894261 24894310 -123889162 - MIR SINE MIR -203 59 11 207 0 0 0 chr11 24895155 24895178 -123888294 + (A)n Simple_repeat Simple_repeat 1 23 0 1219 137 0 0 chr11 24895178 24895360 -123888112 + AluSc SINE Alu 119 300 -9 522 305 174 30 chr11 24896307 24896605 -123886867 + MER115 DNA AcHobo 316 656 -37 190 350 29 29 chr11 24896769 24896872 -123886600 + L2 LINE L2 2933 3035 -237 254 289 0 0 chr11 24897380 24897470 -123886002 - L1MC4 LINE L1 -1339 6703 6614 25 75 0 0 chr11 24897481 24897534 -123885938 + AT_rich Low_complexity Low_complexity 1 53 0 2641 158 55 29 chr11 24897757 24898306 -123885166 + L1MC1 LINE L1 5755 6317 -16 480 264 58 19 chr11 24898651 24898909 -123884563 + L1MDa LINE L1 2281 2548 -3992 278 173 120 0 chr11 24898934 24899009 -123884463 + L1MDa LINE L1 2531 2614 -3926 42878 29 21 1 chr11 24899009 24905028 -123878444 + L1HS LINE L1 2 6144 -11 936 251 108 8 chr11 24905192 24905590 -123877882 + L1MDa LINE L1 2761 3198 -3342 234 0 0 0 chr11 24906079 24906105 -123877367 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 1203 283 43 5 chr11 24906296 24906670 -123876802 + MER63 DNA MER1_type 673 1060 0 824 179 7 32 chr11 24906825 24907086 -123876386 + CT-rich Low_complexity Low_complexity 1 254 0 1160 147 32 5 chr11 24907087 24907277 -123876195 - AluSx SINE Alu -117 195 1 246 239 28 0 chr11 24907298 24907369 -123876103 + CT-rich Low_complexity Low_complexity 2 74 0 1293 173 20 0 chr11 24909018 24909267 -123874205 - L1MA5 LINE L1 0 6300 6047 1922 144 7 16 chr11 24909270 24909575 -123873897 - AluSx SINE Alu -7 305 4 4714 127 31 14 chr11 24909582 24910349 -123873123 + LTR17 LTR ERV1 1 780 0 2779 182 24 9 chr11 24910368 24910911 -123872561 + L1MA5 LINE L1 5478 6028 -272 723 278 35 66 chr11 24911628 24912024 -123871448 - L1ME2 LINE L1 -1 6163 5780 2133 168 36 32 chr11 24912026 24912573 -123870899 - MLT2A2 LTR ERVL -2 552 1 396 317 37 22 chr11 24912574 24912842 -123870630 - L1ME2 LINE L1 -386 5780 5509 630 231 139 54 chr11 24912845 24913115 -123870357 - L1ME2 LINE L1 -724 5438 5192 1762 83 91 26 chr11 24913115 24913438 -123870034 + AluSg SINE Alu 1 340 0 630 231 139 54 chr11 24913438 24913674 -123869798 - L1ME2 LINE L1 -970 5192 4869 1710 245 67 60 chr11 24913699 24914233 -123869239 + MER77 LTR ERV1 55 592 -13 635 267 148 3 chr11 24914264 24914609 -123868863 - L1ME2 LINE L1 -1279 4867 4473 211 298 0 0 chr11 24914857 24914914 -123868558 + GA-rich Low_complexity Low_complexity 4 60 0 243 0 0 0 chr11 24914993 24915020 -123868452 + (CA)n Simple_repeat Simple_repeat 1 27 0 28 0 0 0 chr11 24915113 24915141 -123868331 + AT_rich Low_complexity Low_complexity 1 28 0 1652 152 71 9 chr11 24915249 24915572 -123867900 - MER61A LTR ERV1 0 343 1 862 354 70 11 chr11 24916316 24916886 -123866586 + ERVL LTR ERVL 4072 4675 -1089 303 232 152 0 chr11 24917140 24917252 -123866220 - MER104 DNA Tc2 -51 129 1 301 306 62 16 chr11 24917332 24917525 -123865947 - L1ME3A LINE L1 -289 5881 5680 435 312 45 9 chr11 24917656 24917877 -123865595 - L1ME3A LINE L1 -577 5585 5357 381 43 0 0 chr11 24918497 24918544 -123864928 + (CA)n Simple_repeat Simple_repeat 2 48 0 788 166 21 0 chr11 24918548 24918693 -123864779 - L1MA7 LINE L1 -41 6250 6103 252 86 0 0 chr11 24918921 24918956 -123864516 + (TA)n Simple_repeat Simple_repeat 1 35 0 255 350 72 22 chr11 24920716 24920866 -123862606 + MIR SINE MIR 3 159 -70 306 243 189 9 chr11 24921086 24921197 -123862275 + L2 LINE L2 3183 3313 0 339 344 77 57 chr11 24922356 24922603 -123860869 - MIR SINE MIR -6 256 5 1972 160 45 1 chr11 24922817 24923462 -123860010 - L1P5 LINE L1 -584 5570 4904 5750 185 50 24 chr11 24923485 24924054 -123859418 - L1PBb LINE L1 -3264 2939 2387 2206 95 7 3 chr11 24924054 24924359 -123859113 + AluY SINE Alu 1 306 -5 5750 185 50 24 chr11 24924359 24926097 -123857375 - L1PBb LINE L1 -3816 2387 544 2184 116 0 0 chr11 24926097 24926391 -123857081 + AluSx SINE Alu 1 294 -18 5750 185 50 24 chr11 24926391 24926895 -123856577 - L1PBb LINE L1 -5659 544 55 4610 29 7 0 chr11 24926895 24927444 -123856028 + L1PA4 LINE L1 5601 6153 -2 31 0 0 0 chr11 24927449 24927480 -123855992 + AT_rich Low_complexity Low_complexity 1 31 0 3940 294 28 28 chr11 24927497 24927981 -123855491 - L1PBa LINE L1 -5224 1639 1156 2015 151 40 0 chr11 24927981 24928305 -123855167 - MER1B DNA MER1_type 0 337 1 3940 294 28 28 chr11 24928305 24929457 -123854015 - L1PBa LINE L1 -5706 1157 3 1754 151 4 0 chr11 24929904 24930163 -123853309 + AluSx SINE Alu 39 298 -14 502 290 35 0 chr11 24930223 24930368 -123853104 + MLT1J2 LTR MaLR 31 180 -270 209 214 68 17 chr11 24930751 24930868 -123852604 + (TATAA)n Simple_repeat Simple_repeat 1 123 0 23 33 0 0 chr11 24931283 24931313 -123852159 + AT_rich Low_complexity Low_complexity 1 30 0 2491 50 0 3 chr11 24931747 24932044 -123851428 - AluY SINE Alu -13 298 3 363 161 0 62 chr11 24932245 24932326 -123851146 + MADE1 DNA Mariner 1 76 -4 2205 128 8 35 chr11 24932326 24932700 -123850772 + THE1B LTR MaLR 1 364 0 21 36 0 0 chr11 24932737 24932765 -123850707 + AT_rich Low_complexity Low_complexity 1 28 0 5324 206 32 27 chr11 24932938 24934266 -123849206 + L1MA5 LINE L1 3353 4687 -1459 * 5388 152 47 6 chr11 24934260 24935295 -123848177 + L1MA5 LINE L1 5157 6254 -46 1490 218 0 11 chr11 24935298 24935582 -123847890 + AluJo SINE Alu 1 281 -31 287 148 0 0 chr11 24935626 24935680 -123847792 + L1MA5 LINE L1 6245 6298 -2 617 291 81 0 chr11 24936127 24936337 -123847135 - MIR SINE MIR -6 256 30 773 363 65 34 chr11 24936421 24936989 -123846483 + MER115 DNA AcHobo 2 587 -106 27 29 0 0 chr11 24937780 24937814 -123845658 + AT_rich Low_complexity Low_complexity 1 34 0 331 321 0 51 chr11 24939888 24940025 -123843447 - MIR SINE MIR -6 256 127 250 337 121 6 chr11 24940082 24940248 -123843224 - L2 LINE L2 -10 3303 3119 1479 224 134 33 chr11 24940324 24940748 -123842724 + MLT2B1 LTR ERVL 3 469 -51 6186 100 9 3 chr11 24940907 24942417 -123841055 - L1PA10 LINE L1 -4 6164 4636 213 39 0 0 chr11 24942417 24942443 -123841029 + (TTG)n Simple_repeat Simple_repeat 2 27 0 772 204 0 7 chr11 24942445 24942597 -123840875 - AluJb SINE Alu -25 287 137 944 307 95 46 chr11 24943208 24943614 -123839858 - MLT1E2 LTR MaLR -7 619 142 22 0 0 0 chr11 24944339 24944361 -123839111 + AT_rich Low_complexity Low_complexity 1 22 0 1291 348 40 25 chr11 24944580 24945497 -123837975 - HERVL LTR ERVL -1253 4235 3302 518 286 62 58 chr11 24946432 24946740 -123836732 - LTR16A1 LTR ERVL -118 339 31 203 147 0 0 chr11 24946778 24946812 -123836660 + (TC)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr11 24946900 24946922 -123836550 + AT_rich Low_complexity Low_complexity 1 22 0 378 272 58 102 chr11 24947344 24947550 -123835922 + MER58C DNA MER1_type 2 198 -17 425 366 21 16 chr11 24947821 24948007 -123835465 - MER5A DNA MER1_type 0 189 3 379 247 75 75 chr11 24948094 24948268 -123835204 - L2 LINE L2 -23 3290 3117 206 171 24 0 chr11 24948345 24948386 -123835086 - L2 LINE L2 -614 2700 2659 1771 216 58 19 chr11 24948413 24948840 -123834632 + MLT1D LTR MaLR 62 505 0 1668 319 72 25 chr11 24948840 24949632 -123833840 - L2 LINE L2 -654 2660 1832 390 321 97 20 chr11 24949622 24949818 -123833654 + MIR SINE MIR 49 259 -3 * 1613 111 36 21 chr11 24950452 24950731 -123832741 - L1MA5A LINE L1 -1 6296 6014 247 188 0 0 chr11 24950882 24950930 -123832542 - L1PA15-16 LINE L1 -3931 2918 2871 1871 151 0 3 chr11 24951755 24952077 -123831395 - AluSx SINE Alu 0 321 1 311 136 17 0 chr11 24952196 24952255 -123831217 + (CA)n Simple_repeat Simple_repeat 2 61 0 1876 147 57 35 chr11 24952416 24952783 -123830689 + THE1C LTR MaLR 1 375 0 201 139 0 0 chr11 24952831 24952874 -123830598 + (CAA)n Simple_repeat Simple_repeat 2 44 0 731 240 17 11 chr11 24952949 24953128 -123830344 + MER20 DNA MER1_type 36 215 -4 355 349 120 5 chr11 24953509 24953701 -123829771 + LTR33 LTR ERVL 2 215 -306 180 77 0 0 chr11 24953881 24953907 -123829565 + (TAAAAA)n Simple_repeat Simple_repeat 2 27 0 2048 128 0 3 chr11 24954475 24954772 -123828700 - AluSg SINE Alu -14 296 1 759 267 234 16 chr11 24954772 24955218 -123828254 - Charlie1 DNA MER1_type -918 1843 5 328 355 94 0 chr11 24955503 24955641 -123827831 + L2 LINE L2 3103 3253 -19 241 374 25 74 chr11 24955751 24955954 -123827518 - MIR SINE MIR -14 248 56 228 241 0 0 chr11 24956172 24956230 -123827242 + (TATATG)n Simple_repeat Simple_repeat 6 63 0 229 177 0 114 chr11 24956340 24956419 -123827053 + LTR66 LTR ERVL 367 436 -174 307 273 222 46 chr11 24957201 24957417 -123826055 + MER112 DNA MER1_type 4 257 -3 6551 13 0 0 chr11 24957621 24958370 -123825102 - L1PA2 LINE L1 -147 6008 5260 * 10226 24 0 0 chr11 24958365 24959572 -123823900 + L1PA2 LINE L1 4051 5257 -889 316 301 135 0 chr11 24961398 24961554 -123821918 + MIR SINE MIR 71 247 -15 2237 102 0 0 chr11 24961741 24962026 -123821446 - AluSg SINE Alu -11 299 15 224 213 16 0 chr11 24962282 24962343 -123821129 + (TA)n Simple_repeat Simple_repeat 2 63 0 300 102 0 0 chr11 24962358 24962407 -123821065 + (TG)n Simple_repeat Simple_repeat 2 50 0 1756 233 35 19 chr11 24962908 24963619 -123819853 + MER45B DNA AcHobo 37 797 -243 952 228 48 4 chr11 24963658 24963908 -123819564 + MER45B DNA AcHobo 780 1040 0 1048 315 28 59 chr11 24964732 24965307 -123818165 + LTR67 LTR ERVL 1 557 0 1256 241 82 15 chr11 24965893 24966234 -123817238 - MLT1A1 LTR MaLR -1 364 1 240 111 0 0 chr11 24967346 24967382 -123816090 + (A)n Simple_repeat Simple_repeat 1 36 0 2006 163 14 62 chr11 24968670 24969105 -123814367 - MLT2D LTR ERVL 0 414 1 244 342 86 26 chr11 24969306 24969423 -123814049 - L2 LINE L2 -5 3267 3144 277 318 138 11 chr11 24969858 24970047 -123813425 + MIR SINE MIR 13 225 -37 2148 132 0 3 chr11 24970336 24970647 -123812825 + AluSx SINE Alu 3 312 0 204 331 62 62 chr11 24971099 24971244 -123812228 - MIR3 SINE MIR -36 172 28 2596 33 3 0 chr11 24971688 24971994 -123811478 + AluY SINE Alu 1 307 -4 4045 160 10 26 chr11 24972483 24973251 -123810221 - L1PB4 LINE L1 -169 5987 5233 4852 195 27 21 chr11 24973267 24974362 -123809110 + L1MA9 LINE L1 5070 6171 -141 180 0 0 0 chr11 24974362 24974382 -123809090 + (CA)n Simple_repeat Simple_repeat 1 20 0 4852 195 27 21 chr11 24974382 24974524 -123808948 + L1MA9 LINE L1 6171 6311 -1 202 118 29 0 chr11 24974537 24974571 -123808901 + (CAA)n Simple_repeat Simple_repeat 2 36 0 207 318 12 35 chr11 24974991 24975076 -123808396 - L2 LINE L2 -24 3248 3166 2753 104 15 0 chr11 24975499 24975894 -123807578 + HSMAR1 DNA Mariner 3 403 -884 2643 201 38 61 chr11 24975896 24976738 -123806734 + LTR1 LTR ERV1 2 785 0 5531 123 21 25 chr11 24976738 24977628 -123805844 + HSMAR1 DNA Mariner 401 1287 0 247 326 47 16 chr11 24978261 24978390 -123805082 - MIR SINE MIR -7 255 123 601 291 73 8 chr11 24978514 24978761 -123804711 + L2 LINE L2 3050 3312 -1 285 360 20 0 chr11 24979236 24979336 -123804136 + L3 LINE CR1 915 1016 -561 195 195 0 0 chr11 24979398 24979439 -123804033 - L2 LINE L2 0 3313 3273 250 387 12 18 chr11 24981261 24981429 -123802043 + L2 LINE L2 2715 2881 -433 26 64 0 0 chr11 24981571 24981618 -123801854 + AT_rich Low_complexity Low_complexity 1 47 0 215 381 0 31 chr11 24981648 24981745 -123801727 - L2 LINE L2 -25 3247 3154 29 47 0 0 chr11 24983490 24983533 -123799939 + AT_rich Low_complexity Low_complexity 1 43 0 183 42 0 0 chr11 24983935 24983959 -123799513 + (A)n Simple_repeat Simple_repeat 1 24 0 716 251 45 15 chr11 24984255 24984454 -123799018 - MLT1F LTR MaLR -268 274 70 359 184 118 26 chr11 24984467 24984543 -123798929 + THE1C LTR MaLR 1 83 -292 3965 120 100 125 chr11 24984579 24986025 -123797447 - pTR5 LTR ERV1 0 2438 744 1474 118 81 37 chr11 24986025 24986296 -123797176 + THE1C LTR MaLR 93 375 0 233 200 89 0 chr11 24986296 24986338 -123797134 - MLT1F LTR MaLR -494 48 3 600 317 56 27 chr11 24988212 24988696 -123794776 - MLT1G1 LTR MaLR 0 595 1 1216 266 46 48 chr11 24988936 24989372 -123794100 - MLT1D LTR MaLR -48 457 23 22 0 0 0 chr11 24989888 24989910 -123793562 + AT_rich Low_complexity Low_complexity 1 22 0 875 117 12 177 chr11 24990069 24990318 -123793154 - Tigger7 DNA MER2_type -69 2518 2311 1386 229 8 4 chr11 24990320 24990587 -123792885 - Tigger7 DNA MER2_type -465 268 1 1357 261 52 45 chr11 24991766 24992596 -123790876 + L1ME1 LINE L1 740 1577 -4503 610 258 42 21 chr11 24992596 24992883 -123790589 - L1ME1 LINE L1 -3909 3656 3364 927 257 14 4 chr11 24992883 24993163 -123790309 + L1ME1 LINE L1 3668 3950 -3615 1744 229 93 63 chr11 24993319 24994642 -123788830 + L1ME1 LINE L1 6216 7564 -21 270 319 143 45 chr11 24995765 24996163 -123787309 - MLT1K LTR MaLR -15 573 137 25 0 0 0 chr11 24996356 24996381 -123787091 + AT_rich Low_complexity Low_complexity 1 25 0 329 248 90 23 chr11 24996393 24996526 -123786946 + MIR SINE MIR 73 214 -48 427 183 15 99 chr11 24996541 24996672 -123786800 - FLAM_C SINE Alu -1 142 23 376 254 22 28 chr11 24997333 24997514 -123785958 + (TA)n Simple_repeat Simple_repeat 1 180 0 3135 119 73 9 chr11 24997598 24998129 -123785343 + MER34B LTR ERV1 1 565 0 207 0 0 0 chr11 24998418 24998441 -123785031 + (T)n Simple_repeat Simple_repeat 1 23 0 189 0 0 0 chr11 24998655 24998676 -123784796 + (T)n Simple_repeat Simple_repeat 1 21 0 1691 124 7 29 chr11 24998754 24999029 -123784443 + AluSx SINE Alu 36 304 -8 405 322 29 34 chr11 24999207 24999415 -123784057 + MIR SINE MIR 51 257 -5 224 275 29 29 chr11 25000410 25000479 -123782993 + MIR SINE MIR 82 150 -112 507 293 97 33 chr11 25000671 25001278 -123782194 - L1M4 LINE L1 -1063 5083 4438 22 56 0 0 chr11 25001464 25001500 -123781972 + AT_rich Low_complexity Low_complexity 1 36 0 2667 211 18 9 chr11 25001566 25002117 -123781355 - MER74A LTR ERVL 0 558 3 25 75 0 0 chr11 25002155 25002208 -123781264 + AT_rich Low_complexity Low_complexity 1 53 0 478 301 69 42 chr11 25002252 25002660 -123780812 - L1MC4a LINE L1 -1916 5892 5474 348 332 74 5 chr11 25002730 25002920 -123780552 - L1MC4a LINE L1 -2399 3747 3545 1843 113 3 31 chr11 25003416 25003708 -123779764 - AluSx SINE Alu 0 312 29 301 356 0 0 chr11 25005506 25005610 -123777862 - MIR3 SINE MIR -24 184 81 274 200 0 0 chr11 25005981 25006031 -123777441 + Alu SINE Alu 244 293 -8 427 242 0 0 chr11 25006038 25006129 -123777343 - MER67D LTR ERV1 -417 97 7 2756 198 46 132 chr11 25006870 25007842 -123775630 - MER21A LTR ERV1 -7 924 36 857 178 53 0 chr11 25007871 25008040 -123775432 + HSMAR2 DNA Mariner 1 178 -1124 708 80 7 11 chr11 25008040 25008147 -123775325 - THE1B LTR MaLR 0 364 264 * 1189 166 5 5 chr11 25008144 25008349 -123775123 + HSMAR2 DNA Mariner 617 821 -481 * 1251 202 8 12 chr11 25008344 25008602 -123774870 - THE1A LTR MaLR -98 257 1 1589 161 11 4 chr11 25008618 25008892 -123774580 + HSMAR2 DNA Mariner 181 456 -846 * 3879 149 41 18 chr11 25008885 25009609 -123773863 + HSMAR2 DNA Mariner 562 1302 0 384 314 76 8 chr11 25010295 25010649 -123772823 - L1M4 LINE L1 -1715 4431 4054 428 218 10 102 chr11 25010799 25010996 -123772476 - L1ME3A LINE L1 -87 6477 6299 54 16 0 0 chr11 25011009 25011070 -123772402 + AT_rich Low_complexity Low_complexity 1 61 0 694 283 52 0 chr11 25011070 25011339 -123772133 - L1ME3A LINE L1 -243 6321 6039 957 191 0 6 chr11 25011339 25011512 -123771960 - AluJb SINE Alu -1 311 140 590 281 11 11 chr11 25011521 25011697 -123771775 - L1ME3A LINE L1 -472 6043 5856 21 57 0 0 chr11 25011927 25011962 -123771510 + AT_rich Low_complexity Low_complexity 1 35 0 2046 101 0 28 chr11 25012051 25012339 -123771133 - AluSc SINE Alu -21 288 9 744 290 87 48 chr11 25012349 25012887 -123770585 - L1ME3A LINE L1 -2991 3549 2991 1596 173 54 38 chr11 25012945 25013314 -123770158 + THE1C LTR MaLR 1 375 0 8927 151 27 32 chr11 25013318 25014898 -123768574 + MSTA-int LTR MaLR 5 1575 -5 1624 161 180 14 chr11 25014903 25015270 -123768202 + MSTA LTR MaLR 1 428 0 301 322 0 50 chr11 25015271 25015392 -123768080 - L1ME3A LINE L1 -5434 1096 982 34 24 0 0 chr11 25015483 25015524 -123767948 + AT_rich Low_complexity Low_complexity 1 41 0 1801 256 35 31 chr11 25015544 25015834 -123767638 - MLT1F1 LTR MaLR -84 483 189 7986 52 11 0 chr11 25015834 25016790 -123766682 + LTR5 LTR ERVK 1 966 -3 1801 256 35 31 chr11 25016790 25016980 -123766492 - MLT1F1 LTR MaLR -378 189 1 661 333 74 20 chr11 25017053 25017446 -123766026 - L1ME3A LINE L1 -5650 880 467 316 291 69 44 chr11 25019008 25019211 -123764261 + L2 LINE L2 3106 3313 0 193 304 36 0 chr11 25019707 25019763 -123763709 + MIR SINE MIR 204 261 -1 11266 45 2 0 chr11 25019865 25021273 -123762199 - L1PA5 LINE L1 -1745 4401 2991 7535 52 5 0 chr11 25021273 25022996 -123760476 + L1PA5 LINE L1 4425 6153 -1 248 371 11 34 chr11 25023009 25023184 -123760288 + MIR SINE MIR 86 256 -6 185 273 42 91 chr11 25023237 25023380 -123760092 + MIR SINE MIR 80 215 -47 1994 125 0 26 chr11 25024039 25024342 -123759130 - AluSx SINE Alu -17 295 1 199 300 29 14 chr11 25024647 25024717 -123758755 + L2 LINE L2 2907 2977 -337 3470 243 36 48 chr11 25024893 25025651 -123757821 - L1MD1 LINE L1 -1 6241 5475 718 82 20 0 chr11 25025651 25025749 -123757723 + HY3 scRNA scRNA 1 100 -1 3470 243 36 48 chr11 25025749 25026805 -123756667 - L1MD1 LINE L1 -767 5475 4454 1518 230 99 2 chr11 25026891 25027357 -123756115 + L1MDa LINE L1 1712 2222 -4318 1045 241 108 0 chr11 25027443 25027721 -123755751 - L1ME3A LINE L1 -6181 359 52 2425 111 75 8 chr11 25029952 25030341 -123753131 - MSTA LTR MaLR -11 417 3 1291 225 15 89 chr11 25030531 25030935 -123752537 - MLT1A2 LTR MaLR 0 374 1 1327 252 53 86 chr11 25031290 25031910 -123751562 - LTR9 LTR ERV1 -12 600 1 687 256 126 8 chr11 25032246 25032484 -123750988 - AluSg SINE Alu -44 266 1 318 254 155 14 chr11 25033077 25033163 -123750309 - MLT1J LTR MaLR -349 162 89 207 0 0 0 chr11 25033163 25033186 -123750286 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 318 254 155 14 chr11 25033186 25033241 -123750231 - MLT1J LTR MaLR -422 89 1 286 241 0 0 chr11 25034674 25034732 -123748740 - L2 LINE L2 0 3313 3256 23 0 0 0 chr11 25034910 25034933 -123748539 + AT_rich Low_complexity Low_complexity 1 23 0 198 200 0 0 chr11 25035372 25035407 -123748065 - L2 LINE L2 -556 2758 2724 1747 149 40 66 chr11 25036594 25036989 -123746483 - L1MA9 LINE L1 -12 6300 5916 1160 259 11 125 chr11 25037100 25037794 -123745678 - L1PA10 LINE L1 -255 5913 5299 9456 219 32 32 chr11 25037804 25037825 -123745647 - L1MA9 LINE L1 -961 5185 5166 219 36 0 0 chr11 25037825 25037853 -123745619 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 9456 219 32 32 chr11 25037853 25040452 -123743020 - L1MA9 LINE L1 -980 5166 2563 477 172 9 60 chr11 25040478 25040594 -123742878 - FLAM_C SINE Alu -8 135 26 372 377 15 25 chr11 25041016 25041215 -123742257 + MIR3 SINE MIR 8 204 -4 180 338 38 12 chr11 25041874 25041954 -123741518 + MIR SINE MIR 42 123 -85 28 0 0 0 chr11 25041967 25041995 -123741477 + AT_rich Low_complexity Low_complexity 1 28 0 216 414 69 13 chr11 25043001 25043233 -123740239 - L2 LINE L2 -219 3053 2809 877 278 50 90 chr11 25043493 25043746 -123739726 + LTR16A LTR ERVL 21 283 -167 2099 192 29 7 chr11 25043746 25044163 -123739309 - MSTB LTR MaLR 0 426 1 8093 193 13 26 chr11 25044172 25045841 -123737631 - MSTB-int LTR MaLR -3 1648 1 2219 135 57 50 chr11 25045841 25046092 -123737380 - MSTB LTR MaLR 0 426 169 1745 153 49 0 chr11 25046092 25046401 -123737071 + AluSx SINE Alu 1 312 0 2219 135 57 50 chr11 25046401 25046572 -123736900 - MSTB LTR MaLR -257 169 1 877 278 50 90 chr11 25046572 25046728 -123736744 + LTR16A LTR ERVL 289 424 -26 588 283 66 20 chr11 25047768 25047966 -123735506 - MIR SINE MIR -50 212 6 486 0 0 0 chr11 25048407 25048461 -123735011 + (CA)n Simple_repeat Simple_repeat 1 54 0 274 261 92 39 chr11 25048854 25048984 -123734488 - MIR SINE MIR -101 161 25 683 335 44 24 chr11 25049066 25049496 -123733976 - LTR16A LTR ERVL -9 448 2 317 366 23 0 chr11 25049503 25049634 -123733838 - MIR SINE MIR -10 252 119 329 335 47 28 chr11 25051404 25051619 -123731853 - MLT1K LTR MaLR -368 220 2 263 167 15 0 chr11 25051654 25051720 -123731752 + (TA)n Simple_repeat Simple_repeat 1 67 0 743 199 54 18 chr11 25051926 25052092 -123731380 - FAM SINE Alu 0 175 4 257 235 259 0 chr11 25052707 25052792 -123730680 - MIR SINE MIR -8 254 148 488 309 75 53 chr11 25053102 25053422 -123730050 + MER68 LTR ERV1 236 562 0 1612 275 130 30 chr11 25053847 25054768 -123728704 - L1MDa LINE L1 -2658 3724 2897 4250 91 17 9 chr11 25054768 25055409 -123728063 - L1MA1 LINE L1 0 6302 5657 1612 275 130 30 chr11 25055409 25055828 -123727644 - L1MDa LINE L1 -3485 2897 2521 180 0 0 0 chr11 25055828 25055848 -123727624 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1612 275 130 30 chr11 25055848 25056428 -123727044 - L1MDa LINE L1 -3861 2521 1496 1706 39 5 0 chr11 25056439 25056645 -123726827 - L1P2 LINE L1 -1884 4262 4056 * 9064 34 11 1 chr11 25056642 25058169 -123725303 + L1P2 LINE L1 4269 5808 -347 6852 38 36 0 chr11 25058269 25059222 -123724250 + L1PA4 LINE L1 5171 6154 -1 317 292 83 49 chr11 25059224 25059655 -123723817 - L1MDa LINE L1 -4814 1568 1123 330 324 89 33 chr11 25059660 25059873 -123723599 - L1MDa LINE L1 -5472 1091 867 359 374 46 27 chr11 25060161 25060380 -123723092 - L1MDa LINE L1 -5931 632 410 259 71 0 24 chr11 25061075 25061117 -123722355 + L1MB8 LINE L1 5919 5959 -219 1378 167 56 0 chr11 25061422 25061692 -123721780 - L1MA4 LINE L1 -340 5960 5676 1657 176 0 0 chr11 25061696 25061998 -123721474 + L1MA4 LINE L1 5999 6300 0 22 35 0 0 chr11 25062389 25062418 -123721054 + AT_rich Low_complexity Low_complexity 1 29 0 187 315 169 42 chr11 25062862 25063342 -123720130 - L2 LINE L2 -738 2576 2036 3524 233 44 19 chr11 25063343 25064624 -123718848 + L1MB7 LINE L1 4875 6183 -1 428 290 32 38 chr11 25065327 25065513 -123717959 + MIR SINE MIR 23 207 -55 246 219 133 38 chr11 25066325 25066430 -123717042 + MIR SINE MIR 120 234 -28 210 37 0 0 chr11 25066466 25066493 -123716979 + (TC)n Simple_repeat Simple_repeat 2 28 0 345 24 0 0 chr11 25066493 25066535 -123716937 + (CA)n Simple_repeat Simple_repeat 1 42 0 345 306 82 55 chr11 25072436 25072619 -123710853 + MIR SINE MIR 67 254 -8 26 0 0 0 chr11 25072637 25072663 -123710809 + AT_rich Low_complexity Low_complexity 1 26 0 1868 127 3 14 chr11 25072847 25073154 -123710318 - AluSg1 SINE Alu 0 304 1 349 219 195 16 chr11 25074108 25074231 -123709241 - MIR3 SINE MIR -49 159 15 294 319 118 7 chr11 25074913 25075057 -123708415 + MIR SINE MIR 74 233 -29 28 29 0 0 chr11 25075168 25075203 -123708269 + AT_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chr11 25075240 25075266 -123708206 + AT_rich Low_complexity Low_complexity 1 26 0 228 280 97 21 chr11 25075904 25075997 -123707475 + MIR SINE MIR 150 249 -13 21 95 0 0 chr11 25076374 25076437 -123707035 + AT_rich Low_complexity Low_complexity 1 63 0 234 323 32 11 chr11 25077584 25077677 -123705795 + MER5A DNA MER1_type 7 101 -88 40 0 0 0 chr11 25078436 25078476 -123704996 + AT_rich Low_complexity Low_complexity 1 40 0 596 309 51 6 chr11 25078514 25078692 -123704780 - MIR SINE MIR -75 187 2 27 0 0 0 chr11 25079152 25079179 -123704293 + AT_rich Low_complexity Low_complexity 1 27 0 263 371 113 10 chr11 25079179 25079373 -123704099 - MIR SINE MIR 0 262 49 242 99 50 58 chr11 25079898 25080019 -123703453 + (TA)n Simple_repeat Simple_repeat 2 121 0 22 35 0 0 chr11 25080152 25080181 -123703291 + AT_rich Low_complexity Low_complexity 1 29 0 207 232 146 12 chr11 25080464 25080546 -123702926 - MIR SINE MIR -46 216 124 657 212 116 83 chr11 25080905 25081060 -123702412 - MLT1J LTR MaLR -3 508 360 522 189 89 125 chr11 25081060 25081341 -123702131 + ORSL DNA AcHobo 5 275 0 657 212 116 83 chr11 25081341 25081487 -123701985 - MLT1J LTR MaLR -151 360 197 400 268 165 0 chr11 25081690 25081817 -123701655 + MER6B DNA MER2_type 2 149 -61 35 0 0 0 chr11 25081857 25081892 -123701580 + AT_rich Low_complexity Low_complexity 1 35 0 282 350 80 0 chr11 25082747 25082884 -123700588 - MIR3 SINE MIR -2 206 59 2230 95 0 25 chr11 25083210 25083525 -123699947 - AluSx SINE Alu -4 308 2 22 0 0 0 chr11 25083670 25083692 -123699780 + AT_rich Low_complexity Low_complexity 1 22 0 186 327 0 0 chr11 25085884 25085939 -123697533 - L2 LINE L2 -4 3268 3214 587 270 91 20 chr11 25086233 25086485 -123696987 + LTR16A1 LTR ERVL 188 457 0 346 302 47 30 chr11 25086485 25086654 -123696818 + MIR SINE MIR 36 207 -55 3391 113 69 26 chr11 25086786 25087395 -123696077 - LTR24C LTR ERV1 0 635 1 2500 58 0 3 chr11 25087672 25087981 -123695491 + AluY SINE Alu 1 308 -3 28 86 0 0 chr11 25087992 25088062 -123695410 + AT_rich Low_complexity Low_complexity 1 70 0 193 423 10 10 chr11 25088689 25088793 -123694679 - MIR SINE MIR -140 122 19 2337 158 49 7 chr11 25089179 25089627 -123693845 - MER101 LTR ERV1 0 474 8 602 126 0 0 chr11 25091255 25091342 -123692130 - MER70B LTR ERVL -2 576 490 2214 127 0 0 chr11 25091537 25091837 -123691635 + AluSx SINE Alu 1 300 -12 180 125 0 0 chr11 25092798 25092830 -123690642 + (T)n Simple_repeat Simple_repeat 1 32 0 22 70 0 0 chr11 25093749 25093792 -123689680 + AT_rich Low_complexity Low_complexity 1 43 0 25 51 0 0 chr11 25094003 25094042 -123689430 + AT_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chr11 25094664 25094688 -123688784 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr11 25097847 25097869 -123685603 + AT_rich Low_complexity Low_complexity 1 22 0 288 0 0 0 chr11 25098036 25098068 -123685404 + (CA)n Simple_repeat Simple_repeat 1 32 0 266 256 83 33 chr11 25098724 25098845 -123684627 + MER103 DNA DNA 23 149 -17 628 39 0 0 chr11 25098978 25099056 -123684416 - L1PA4 LINE L1 -3 6152 6075 309 305 47 47 chr11 25099569 25099759 -123683713 + L2 LINE L2 3124 3313 0 277 344 120 50 chr11 25100120 25100661 -123682811 + L2 LINE L2 1699 2277 -1037 234 0 0 0 chr11 25100683 25100709 -123682763 + (TTA)n Simple_repeat Simple_repeat 2 27 0 22 56 0 0 chr11 25100910 25100946 -123682526 + AT_rich Low_complexity Low_complexity 1 36 0 2048 178 31 2 chr11 25100946 25101361 -123682111 - L1MA5 LINE L1 -6 6294 5868 451 305 170 27 chr11 25101370 25101629 -123681843 + L2 LINE L2 2298 2593 -721 520 273 130 60 chr11 25101652 25102099 -123681373 - L1MC5 LINE L1 -32 7929 7452 207 218 0 0 chr11 25103888 25103943 -123679529 + (TA)n Simple_repeat Simple_repeat 2 56 0 212 266 16 38 chr11 25103999 25104183 -123679289 + (TA)n Simple_repeat Simple_repeat 1 180 0 12875 165 25 18 chr11 25104583 25106982 -123676490 - Tigger1 DNA MER2_type -1 2417 1 719 229 48 0 chr11 25107886 25108074 -123675398 + L1MC4a LINE L1 4920 5116 -1030 363 206 305 0 chr11 25108075 25108206 -123675266 + L1MB7 LINE L1 6005 6175 -9 206 268 18 0 chr11 25108258 25108314 -123675158 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 303 351 109 14 chr11 25108314 25108599 -123674873 + L1MC4a LINE L1 5597 5908 -1900 22 0 0 0 chr11 25108753 25108775 -123674697 + AT_rich Low_complexity Low_complexity 1 22 0 303 326 16 0 chr11 25108936 25109065 -123674407 - MER94 DNA DNA -3 131 1 223 284 0 30 chr11 25109478 25109545 -123673927 + MIR SINE MIR 192 256 -6 1533 221 0 49 chr11 25109900 25110289 -123673183 + MLT1A2 LTR MaLR 1 370 -4 2287 111 0 0 chr11 25110615 25110922 -123672550 + AluSq SINE Alu 1 307 -6 22 0 0 0 chr11 25112856 25112878 -123670594 + AT_rich Low_complexity Low_complexity 1 22 0 2026 119 0 4 chr11 25113212 25113490 -123669982 + AluSx SINE Alu 30 306 -6 1593 200 13 13 chr11 25113602 25113917 -123669555 - LTR38 LTR ERV1 0 556 242 9749 165 26 21 chr11 25113936 25116552 -123666920 - L1PA13 LINE L1 -13 6150 3549 234 0 0 0 chr11 25116552 25116578 -123666894 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 9749 165 26 21 chr11 25116578 25116608 -123666864 - L1PA13 LINE L1 -2614 3549 3521 306 0 0 0 chr11 25116608 25116642 -123666830 + (TGG)n Simple_repeat Simple_repeat 1 34 0 9749 165 26 21 chr11 25116642 25116823 -123666649 - L1PA13 LINE L1 -2642 3521 3322 5199 172 28 10 chr11 25116823 25118365 -123665107 + L1PA15 LINE L1 4606 6161 -4 4177 183 30 8 chr11 25118579 25119412 -123664060 - Tigger3b DNA MER2_type -379 852 2 219 351 27 54 chr11 25120168 25120353 -123663119 - L3 LINE CR1 -135 1442 1263 867 185 0 25 chr11 25120438 25120600 -123662872 + FRAM SINE Alu 2 159 -17 1426 204 35 32 chr11 25120862 25121265 -123662207 + L1MB8 LINE L1 5774 6177 -1 276 255 0 11 chr11 25121924 25122018 -123661454 + L1M4 LINE L1 3909 4001 -2145 277 296 113 12 chr11 25122153 25122393 -123661079 + L1M4 LINE L1 4182 4445 -1701 38 75 0 0 chr11 25122543 25122623 -123660849 + AT_rich Low_complexity Low_complexity 1 80 0 195 167 0 0 chr11 25122775 25122817 -123660655 + (TA)n Simple_repeat Simple_repeat 1 42 0 23 33 0 0 chr11 25123423 25123453 -123660019 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr11 25124338 25124360 -123659112 + AT_rich Low_complexity Low_complexity 1 22 0 391 333 99 39 chr11 25124455 25124891 -123658581 + L3 LINE CR1 823 1284 -293 273 304 112 0 chr11 25124893 25125018 -123658454 + MIR SINE MIR 124 262 0 1803 152 7 14 chr11 25125338 25125634 -123657838 + AluJo SINE Alu 1 294 -18 23 33 0 0 chr11 25127353 25127383 -123656089 + AT_rich Low_complexity Low_complexity 1 30 0 285 261 14 0 chr11 25127426 25127495 -123655977 + MLT2B3 LTR ERVL 1 70 -484 2265 206 16 56 chr11 25127593 25128092 -123655380 + MLT2B3 LTR ERVL 76 554 0 1032 216 33 118 chr11 25128226 25128624 -123654848 + MLT1A1 LTR MaLR 1 364 -1 1202 82 0 12 chr11 25129584 25129754 -123653718 + L1PA7 LINE L1 5959 6126 -28 277 309 41 0 chr11 25130199 25130296 -123653176 - MER5B DNA MER1_type -9 169 69 195 318 157 37 chr11 25130393 25130610 -123652862 - L2 LINE L2 -683 2631 2389 346 336 47 23 chr11 25130730 25130858 -123652614 - L2 LINE L2 -8 3264 3134 34 0 0 0 chr11 25130998 25131032 -123652440 + AT_rich Low_complexity Low_complexity 1 34 0 2347 72 0 25 chr11 25131141 25131487 -123651985 + L1PA7 LINE L1 5824 6161 0 32 0 0 0 chr11 25131815 25131847 -123651625 + AT_rich Low_complexity Low_complexity 1 32 0 2304 77 0 29 chr11 25132217 25132529 -123650943 + AluY SINE Alu 1 303 -8 185 327 88 26 chr11 25133005 25133118 -123650354 - L2 LINE L2 -4 3309 3190 192 275 66 33 chr11 25133562 25133653 -123649819 - MIR3 SINE MIR -28 180 87 768 234 8 51 chr11 25135670 25135926 -123647546 + L1M4b LINE L1 1358 1602 -5257 25 0 0 0 chr11 25135933 25135958 -123647514 + AT_rich Low_complexity Low_complexity 1 25 0 1263 117 6 0 chr11 25135964 25136144 -123647328 - AluSc SINE Alu 0 309 129 198 103 0 0 chr11 25136148 25136177 -123647295 + (TG)n Simple_repeat Simple_repeat 2 30 0 261 278 0 0 chr11 25136179 25136269 -123647203 + L1MC4 LINE L1 6614 6703 -1339 207 0 0 0 chr11 25136269 25136292 -123647180 + (CA)n Simple_repeat Simple_repeat 2 24 0 353 261 11 0 chr11 25136425 25136513 -123646959 + L1MC4 LINE L1 6614 6702 -1340 934 114 0 0 chr11 25136536 25136659 -123646813 - AluSc SINE Alu -186 123 1 1737 273 46 30 chr11 25136686 25137445 -123646027 + L1M4b LINE L1 1623 2393 -4566 894 239 71 34 chr11 25137493 25137666 -123645806 + L1M4b LINE L1 2950 3115 -3842 1502 137 26 0 chr11 25137666 25137892 -123645580 + AluSg/x SINE Alu 69 300 -10 894 239 71 34 chr11 25137892 25138084 -123645388 + L1M4b LINE L1 3115 3325 -3632 24 0 0 0 chr11 25138145 25138169 -123645303 + AT_rich Low_complexity Low_complexity 1 24 0 384 255 32 0 chr11 25138941 25139035 -123644437 - MER5A DNA MER1_type -83 106 10 30 27 0 0 chr11 25139365 25139402 -123644070 + AT_rich Low_complexity Low_complexity 1 37 0 180 216 0 0 chr11 25140081 25140118 -123643354 + L3 LINE CR1 1114 1150 -427 275 303 34 3 chr11 25140339 25140434 -123643038 - MIR SINE MIR -64 144 75 * 367 382 50 28 chr11 25140429 25140788 -123642684 + L3 LINE CR1 1208 1574 -3 21 71 0 0 chr11 25141759 25141801 -123641671 + AT_rich Low_complexity Low_complexity 1 42 0 245 281 164 20 chr11 25142849 25142995 -123640477 + MIR SINE MIR 47 213 -49 23 0 0 0 chr11 25143377 25143400 -123640072 + AT_rich Low_complexity Low_complexity 1 23 0 1138 29 0 0 chr11 25143400 25143536 -123639936 - L1PA4 LINE L1 -3 6152 6017 1111 35 18 29 chr11 25143568 25143652 -123639820 + (TTTC)n Simple_repeat Simple_repeat 1 252 0 1111 35 18 29 chr11 25143652 25143823 -123639649 + (TTTC)n Simple_repeat Simple_repeat 2 170 0 200 255 0 0 chr11 25143931 25143982 -123639490 + (TG)n Simple_repeat Simple_repeat 1 51 0 1639 191 112 56 chr11 25144039 25144522 -123638950 - MER67D LTR ERV1 -4 510 1 215 154 26 0 chr11 25144705 25144744 -123638728 + GA-rich Low_complexity Low_complexity 4 43 0 255 321 128 20 chr11 25145107 25145303 -123638169 - MIR SINE MIR -37 225 9 2263 110 0 7 chr11 25145651 25145961 -123637511 + AluSg SINE Alu 3 310 0 26 50 0 0 chr11 25146418 25146458 -123637014 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr11 25146831 25146853 -123636619 + AT_rich Low_complexity Low_complexity 1 22 0 268 292 0 95 chr11 25147184 25147321 -123636151 - MIR SINE MIR -28 234 111 363 306 35 29 chr11 25147374 25147547 -123635925 - MLT1J LTR MaLR -21 490 317 2454 137 57 26 chr11 25147992 25148452 -123635020 + L1PA16 LINE L1 5682 6155 -11 1687 175 0 0 chr11 25150907 25151234 -123632238 + AluSx SINE Alu 1 327 0 380 328 59 46 chr11 25151256 25151494 -123631978 - MIR SINE MIR -8 254 14 234 0 0 0 chr11 25151818 25151844 -123631628 + (T)n Simple_repeat Simple_repeat 1 26 0 252 0 0 0 chr11 25152259 25152287 -123631185 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 244 218 36 36 chr11 25152639 25152749 -123630723 + (CATATA)n Simple_repeat Simple_repeat 2 111 0 2224 75 0 30 chr11 25153225 25153530 -123629942 - AluY SINE Alu -15 296 1 188 252 97 68 chr11 25153572 25153675 -123629797 - L2 LINE L2 -1 3312 3207 189 280 144 16 chr11 25153865 25153990 -123629482 - L3b LINE CR1 -173 1410 1270 221 356 59 0 chr11 25154433 25154534 -123628938 - MIR SINE MIR -31 231 125 21 0 0 0 chr11 25156517 25156538 -123626934 + AT_rich Low_complexity Low_complexity 1 21 0 312 369 36 0 chr11 25157182 25157293 -123626179 - L2 LINE L2 -8 3264 3150 245 286 20 0 chr11 25157568 25157666 -123625806 + T-rich Low_complexity Low_complexity 3 102 0 22 0 0 0 chr11 25158168 25158190 -123625282 + AT_rich Low_complexity Low_complexity 1 22 0 292 279 152 19 chr11 25158204 25158362 -123625110 - MIR SINE MIR 0 262 84 183 254 16 32 chr11 25158828 25158891 -123624581 + MIR SINE MIR 155 216 -46 255 214 83 24 chr11 25158900 25158984 -123624488 + MIR3 SINE MIR 119 207 -1 801 208 0 11 chr11 25159793 25159971 -123623501 - L1MA6 LINE L1 -1 6299 6124 724 204 13 13 chr11 25160483 25160635 -123622837 + FRAM SINE Alu 1 152 -24 287 328 22 0 chr11 25161146 25161275 -123622197 + MIR SINE MIR 45 180 -28 22 56 0 0 chr11 25161339 25161375 -123622097 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr11 25162860 25162883 -123620589 + AT_rich Low_complexity Low_complexity 1 23 0 863 255 99 57 chr11 25162971 25163050 -123620422 - MLT1G1 LTR MaLR -205 390 316 353 303 9 0 chr11 25163050 25163159 -123620313 - MER81 DNA DNA -2 112 3 863 255 99 57 chr11 25163159 25163451 -123620021 - MLT1G1 LTR MaLR -279 316 3 205 330 66 11 chr11 25163465 25163556 -123619916 + L2 LINE L2 3199 3294 -19 202 364 30 10 chr11 25164365 25164464 -123619008 + L2 LINE L2 1459 1559 -1755 1851 307 50 38 chr11 25164588 25165536 -123617936 + L2 LINE L2 1807 2832 -482 384 253 20 0 chr11 25166429 25166579 -123616893 + (CA)n Simple_repeat Simple_repeat 2 154 0 1754 183 54 6 chr11 25166596 25166945 -123616527 - MLT2D LTR ERVL -48 366 1 212 288 0 61 chr11 25167647 25167713 -123615759 - MIR SINE MIR -113 149 88 450 75 0 0 chr11 25168581 25168648 -123614824 + (TG)n Simple_repeat Simple_repeat 2 68 0 564 100 0 0 chr11 25169690 25169770 -123613702 + MADE1 DNA Mariner 1 80 0 217 317 49 41 chr11 25171295 25171418 -123612054 - L2 LINE L2 -290 2982 2859 23 33 0 0 chr11 25171569 25171599 -123611873 + AT_rich Low_complexity Low_complexity 1 30 0 327 338 60 48 chr11 25171787 25172101 -123611371 + MLT1L LTR MaLR 210 527 -88 341 355 101 5 chr11 25172317 25172534 -123610938 - MIR SINE MIR -6 256 19 216 0 0 0 chr11 25172639 25172663 -123610809 + (CA)n Simple_repeat Simple_repeat 2 25 0 183 156 0 0 chr11 25173204 25173236 -123610236 + CT-rich Low_complexity Low_complexity 64 95 0 2049 128 3 7 chr11 25177015 25177312 -123606160 + AluSx SINE Alu 3 298 -14 182 172 0 0 chr11 25177317 25177346 -123606126 - L2 LINE L2 -15 3257 3229 1118 185 164 91 chr11 25179201 25179371 -123604101 + MLT1C LTR MaLR 20 176 -291 420 20 0 0 chr11 25179371 25179420 -123604052 + (CA)n Simple_repeat Simple_repeat 2 50 0 1118 185 164 91 chr11 25179420 25179665 -123603807 + MLT1C LTR MaLR 176 465 -2 455 250 78 88 chr11 25180085 25180321 -123603151 + MLT1E2 LTR MaLR 54 254 -372 285 197 0 0 chr11 25180434 25180495 -123602977 + (TA)n Simple_repeat Simple_repeat 1 61 0 312 170 0 100 chr11 25180502 25180602 -123602870 - L1MC4 LINE L1 -1339 6703 6614 276 30 0 0 chr11 25180602 25180635 -123602837 + (CA)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr11 25180907 25180928 -123602544 + AT_rich Low_complexity Low_complexity 1 21 0 273 365 26 0 chr11 25182514 25182629 -123600843 - L2 LINE L2 0 3272 3155 27 0 0 0 chr11 25182648 25182675 -123600797 + AT_rich Low_complexity Low_complexity 1 27 0 379 328 16 0 chr11 25182798 25182920 -123600552 + MIR SINE MIR 8 131 -131 25 0 0 0 chr11 25183761 25183786 -123599686 + AT_rich Low_complexity Low_complexity 1 25 0 1549 222 49 2 chr11 25183815 25184292 -123599180 - L1MA9 LINE L1 -2 6310 5782 255 173 0 0 chr11 25184294 25184346 -123599126 + (TA)n Simple_repeat Simple_repeat 1 52 0 540 226 0 0 chr11 25184400 25184493 -123598979 + Tigger5 DNA MER2_type 2 94 -2229 914 155 126 0 chr11 25184510 25184684 -123598788 + Tigger5 DNA MER2_type 2123 2318 -5 2211 226 29 27 chr11 25184739 25185753 -123597719 - L1MA9 LINE L1 -538 5774 4758 2934 267 52 42 chr11 25186369 25186761 -123596711 + L1M4b LINE L1 425 811 -6048 2178 115 3 13 chr11 25186761 25187075 -123596397 + AluSx SINE Alu 1 311 -1 2934 267 52 42 chr11 25187075 25187739 -123595733 + L1M4b LINE L1 811 1492 -5367 1589 162 4 0 chr11 25187987 25188240 -123595232 + AluSx SINE Alu 8 261 -51 256 64 43 0 chr11 25188368 25188415 -123595057 + (TTTTG)n Simple_repeat Simple_repeat 1 49 0 201 348 170 9 chr11 25188489 25188601 -123594871 - L2 LINE L2 -2 3270 3141 190 301 60 0 chr11 25188627 25188710 -123594762 - MIR SINE MIR -41 221 134 221 56 0 28 chr11 25188941 25188977 -123594495 + (CAT)n Simple_repeat Simple_repeat 3 37 0 316 253 58 58 chr11 25188982 25189136 -123594336 - MIR SINE MIR -12 250 97 340 336 138 23 chr11 25189306 25189660 -123593812 - L2 LINE L2 -601 2713 2319 512 357 119 31 chr11 25191489 25192255 -123591217 + L2 LINE L2 2431 3279 -34 3656 211 40 63 chr11 25192407 25193719 -123589753 - L1MD1 LINE L1 -3 6633 5360 292 119 34 0 chr11 25193764 25193823 -123589649 + (TG)n Simple_repeat Simple_repeat 2 62 0 1023 276 47 3 chr11 25193828 25194208 -123589264 - L1MD1 LINE L1 -1201 5339 4943 572 292 29 5 chr11 25194211 25194420 -123589052 - L1MD1 LINE L1 -3393 3147 2934 3971 237 115 49 chr11 25194452 25194855 -123588617 - L1MD1 LINE L1 -5052 1488 1113 1800 143 3 20 chr11 25194855 25195148 -123588324 + AluSx SINE Alu 1 288 -24 3971 237 115 49 chr11 25195148 25195167 -123588305 - L1MD1 LINE L1 -5427 1113 1097 194 0 0 37 chr11 25195167 25195194 -123588278 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 3971 237 115 49 chr11 25195194 25196148 -123587324 - L1MD1 LINE L1 -5443 1097 21 1539 199 4 18 chr11 25196322 25196645 -123586827 - AluJo SINE Alu 0 324 6 1536 194 71 9 chr11 25196916 25197240 -123586232 + MER2 DNA MER2_type 1 344 0 765 213 171 4 chr11 25199290 25199450 -123584022 - AluJb SINE Alu -33 279 147 2031 70 17 17 chr11 25199450 25199749 -123583723 - L1PA3 LINE L1 -5 6150 5852 765 213 171 4 chr11 25199749 25199827 -123583645 - AluJb SINE Alu -165 147 1 362 302 7 47 chr11 25199931 25200080 -123583392 + MIR SINE MIR 49 183 -72 2060 114 0 10 chr11 25200881 25201178 -123582294 + AluSx SINE Alu 2 295 -17 252 289 96 10 chr11 25201380 25201484 -123581988 - MIR SINE MIR -75 187 75 195 146 0 0 chr11 25202195 25202236 -123581236 + (TTA)n Simple_repeat Simple_repeat 1 41 0 1545 194 17 31 chr11 25202375 25202726 -123580746 + L1MA9 LINE L1 5819 6164 -148 201 39 0 0 chr11 25202739 25202765 -123580707 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 608 129 68 27 chr11 25202787 25202934 -123580538 + L1MA9 LINE L1 6159 6311 -1 324 287 132 7 chr11 25203375 25203511 -123579961 + MIR SINE MIR 67 219 -43 354 143 0 0 chr11 25205542 25205605 -123577867 + (CA)n Simple_repeat Simple_repeat 1 63 0 1979 146 7 0 chr11 25205920 25206229 -123577243 - AluSx SINE Alu -1 311 1 1587 214 28 3 chr11 25206458 25206822 -123576650 - L1PB4 LINE L1 -2 6154 5782 227 113 97 0 chr11 25206829 25206891 -123576581 + (TA)n Simple_repeat Simple_repeat 1 68 0 1672 146 2 11 chr11 25206891 25207180 -123576292 - L1ME LINE L1 -345 5817 5542 6979 215 36 30 chr11 25207287 25209122 -123574350 - L1PB4 LINE L1 -852 5294 3449 21 36 0 0 chr11 25211135 25211163 -123572309 + AT_rich Low_complexity Low_complexity 1 28 0 234 0 0 0 chr11 25211174 25211200 -123572272 + (TG)n Simple_repeat Simple_repeat 2 27 0 385 278 52 9 chr11 25211266 25211381 -123572091 + MIR SINE MIR 20 139 -123 908 169 0 0 chr11 25212269 25212429 -123571043 + L1PB4 LINE L1 5997 6156 0 180 0 0 0 chr11 25212656 25212676 -123570796 + (TG)n Simple_repeat Simple_repeat 2 21 0 538 269 149 25 chr11 25213610 25213811 -123569661 + MIR SINE MIR 5 230 -32 31 26 0 0 chr11 25214176 25214214 -123569258 + AT_rich Low_complexity Low_complexity 1 38 0 3706 177 57 32 chr11 25214396 25215355 -123568117 + MER11C LTR ERVK 1 1071 0 22 0 0 0 chr11 25215564 25215586 -123567886 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr11 25215950 25215976 -123567496 + AT_rich Low_complexity Low_complexity 1 26 0 2183 109 3 0 chr11 25216681 25216985 -123566487 - AluSq SINE Alu -8 305 1 994 223 103 4 chr11 25217249 25217522 -123565950 - MER67D LTR ERV1 -213 301 2 396 167 0 0 chr11 25218247 25218343 -123565129 + (TA)n Simple_repeat Simple_repeat 2 97 0 1068 203 0 5 chr11 25218347 25218539 -123564933 - AluJo SINE Alu -121 191 1 2077 110 14 0 chr11 25219231 25219512 -123563960 - AluSc SINE Alu -24 285 1 811 255 51 1 chr11 25219578 25219804 -123563668 - L1MC3 LINE L1 -203 6141 5981 1047 213 199 42 chr11 25219954 25220357 -123563115 - MER31B LTR ERV1 0 466 1 1000 99 0 105 chr11 25220451 25220622 -123562850 + AluSx SINE Alu 1 153 -159 480 298 84 71 chr11 25221094 25221416 -123562056 - L3 LINE CR1 -60 1517 1192 279 235 15 15 chr11 25272703 25272771 -123510701 - MER39 LTR ERV1 -380 327 260 25 31 0 0 chr11 25273510 25273542 -123509930 + AT_rich Low_complexity Low_complexity 1 32 0 2977 265 32 18 chr11 25273968 25274987 -123508485 + L1MB7 LINE L1 5141 6176 -8 2883 258 14 33 chr11 25275316 25276333 -123507139 + L1 LINE L1 3305 4301 -1845 1572 209 36 3 chr11 25276434 25276798 -123506674 - L1 LINE L1 -1678 4468 4093 4103 147 10 13 chr11 25276798 25277471 -123506001 + L1P3 LINE L1 11 681 -5780 580 305 114 35 chr11 25277684 25277960 -123505512 - L2 LINE L2 -1529 1785 1476 1739 211 11 11 chr11 25277960 25278325 -123505147 + MLT1A1 LTR MaLR 1 365 0 580 305 114 35 chr11 25278325 25278389 -123505083 - L2 LINE L2 -1838 1476 1418 266 353 22 43 chr11 25278644 25278828 -123504644 - LTR33 LTR ERVL -321 200 21 426 268 35 30 chr11 25278884 25279082 -123504390 + MLT2B1 LTR ERVL 2 200 -320 21 57 0 0 chr11 25279326 25279361 -123504111 + AT_rich Low_complexity Low_complexity 1 35 0 1995 127 3 0 chr11 25279548 25279840 -123503632 + AluSc SINE Alu 1 293 -16 1854 272 92 8 chr11 25279850 25280493 -123502979 + L1PBa LINE L1 128 824 -6039 5393 153 15 9 chr11 25280593 25281750 -123501722 + L1P3 LINE L1 4426 5589 -583 2423 112 135 105 chr11 25282639 25283231 -123500241 - MER4B LTR ERV1 0 610 1 2286 50 0 3 chr11 25283958 25284284 -123499188 + AluY SINE Alu 1 325 0 409 254 19 64 chr11 25284820 25284929 -123498543 - MER31A LTR ERV1 0 543 431 1467 178 68 29 chr11 25284929 25285210 -123498262 + AluJb SINE Alu 1 292 -20 409 254 19 64 chr11 25285210 25285314 -123498158 - MER31A LTR ERV1 -112 431 263 6628 68 11 2 chr11 25285423 25287041 -123496431 + L1PA7 LINE L1 4521 6150 -4 25 31 0 0 chr11 25287073 25287105 -123496367 + AT_rich Low_complexity Low_complexity 1 32 0 650 223 56 9 chr11 25287124 25287339 -123496133 - L1 LINE L1 -2041 4105 3881 1103 316 130 31 chr11 25287798 25288000 -123495472 + L1MC4 LINE L1 6444 6625 -1417 265 24 48 0 chr11 25288000 25288042 -123495430 + (CATAT)n Simple_repeat Simple_repeat 2 45 0 1103 316 130 31 chr11 25288042 25289076 -123494396 + L1MC4 LINE L1 6625 7904 -138 219 167 0 0 chr11 25289095 25289137 -123494335 + (TATG)n Simple_repeat Simple_repeat 2 43 0 229 241 72 0 chr11 25289173 25289256 -123494216 + L1MC4 LINE L1 6615 6703 -1339 180 152 0 0 chr11 25289320 25289353 -123494119 + GA-rich Low_complexity Low_complexity 2 34 0 407 280 33 101 chr11 25289498 25289805 -123493667 - L1 LINE L1 -2609 3537 3252 372 330 104 31 chr11 25289930 25290218 -123493254 - L1M4 LINE L1 -1886 4260 3952 1975 168 28 33 chr11 25290232 25290596 -123492876 - THE1B LTR MaLR -2 362 1 10368 120 29 3 chr11 25290596 25292136 -123491336 - THE1B-int LTR MaLR 0 1580 1 2047 124 59 36 chr11 25292136 25292492 -123490980 - THE1B LTR MaLR 0 364 1 240 274 147 49 chr11 25292645 25293549 -123489923 - L1M4 LINE L1 -2369 3777 2785 44 88 0 0 chr11 25293823 25293937 -123489535 + AT_rich Low_complexity Low_complexity 1 114 0 401 275 81 12 chr11 25293937 25294097 -123489375 - L1M4 LINE L1 -3726 2420 2250 460 309 39 15 chr11 25294715 25294919 -123488553 - MLT1A1 LTR MaLR -13 352 144 1607 240 14 25 chr11 25295500 25295867 -123487605 - MLT1A2 LTR MaLR -11 363 1 21 57 0 0 chr11 25295928 25295963 -123487509 + AT_rich Low_complexity Low_complexity 1 35 0 300 237 48 145 chr11 25296239 25296425 -123487047 - MER5B DNA MER1_type -8 170 3 268 318 64 0 chr11 25297857 25297967 -123485505 + MIR SINE MIR 124 240 -22 384 321 130 16 chr11 25298777 25298961 -123484511 + MIR SINE MIR 58 262 0 1142 264 83 13 chr11 25299901 25300287 -123483185 - L1MC4 LINE L1 -253 7789 7377 24 67 0 0 chr11 25300459 25300504 -123482968 + AT_rich Low_complexity Low_complexity 1 45 0 224 300 70 75 chr11 25300546 25300773 -123482699 - MIR SINE MIR -35 227 2 278 384 23 0 chr11 25301100 25301233 -123482239 + MIR3 SINE MIR 28 163 -45 3184 112 0 0 chr11 25301265 25301740 -123481732 - L1PA8 LINE L1 -932 5214 4740 6639 84 3 1 chr11 25301740 25302710 -123480762 + L1PA8 LINE L1 5191 6162 -10 715 251 0 0 chr11 25303154 25303333 -123480139 + L1PA8 LINE L1 5984 6162 -10 371 318 8 39 chr11 25303748 25303877 -123479595 - MER5B DNA MER1_type -49 129 5 271 309 55 27 chr11 25304388 25304498 -123478974 - MIR SINE MIR -64 144 32 22 80 0 0 chr11 25304725 25304775 -123478697 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr11 25305069 25305091 -123478381 + AT_rich Low_complexity Low_complexity 1 22 0 319 317 67 0 chr11 25305374 25305494 -123477978 - L2 LINE L2 0 3313 3186 485 339 27 42 chr11 25306316 25306392 -123477080 + MIR SINE MIR 4 80 -182 2279 71 0 0 chr11 25306392 25306709 -123476763 - AluY SINE Alu 0 317 1 485 339 27 42 chr11 25306709 25306891 -123476581 + MIR SINE MIR 80 259 -3 216 209 0 0 chr11 25307873 25307916 -123475556 + (TA)n Simple_repeat Simple_repeat 2 44 0 348 94 0 0 chr11 25309338 25309391 -123474081 + (TG)n Simple_repeat Simple_repeat 2 54 0 296 253 33 22 chr11 25309619 25309710 -123473762 - MER5A DNA MER1_type 0 189 98 289 314 64 69 chr11 25309685 25309889 -123473583 + L2 LINE L2 2753 2955 -359 * 26 0 0 0 chr11 25310008 25310034 -123473438 + AT_rich Low_complexity Low_complexity 1 26 0 27 22 0 22 chr11 25311212 25311230 -123472242 + AT_rich Low_complexity Low_complexity 1 18 -26 2319 38 42 10 chr11 25311230 25311518 -123471954 - AluY SINE Alu -14 297 1 27 22 0 22 chr11 25311518 25311544 -123471928 + AT_rich Low_complexity Low_complexity 18 44 0 21 36 0 0 chr11 25312770 25312798 -123470674 + AT_rich Low_complexity Low_complexity 1 28 0 2369 94 0 7 chr11 25313028 25313336 -123470136 - AluSp SINE Alu -3 310 5 2219 93 0 3 chr11 25313351 25313641 -123469831 - AluY SINE Alu -22 289 1 717 357 116 13 chr11 25313749 25314449 -123469023 + L2 LINE L2 2551 3313 0 218 354 58 49 chr11 25315275 25315498 -123467974 - MIR SINE MIR -17 245 21 30 0 0 0 chr11 25315526 25315556 -123467916 + AT_rich Low_complexity Low_complexity 1 30 0 232 343 15 0 chr11 25316084 25316151 -123467321 - L2 LINE L2 0 3313 3246 11468 104 22 7 chr11 25316674 25319202 -123464270 - L1P3 LINE L1 -1705 4756 2179 12518 104 5 5 chr11 25319208 25320926 -123462546 - L1P3 LINE L1 -4734 1727 11 4986 178 46 15 chr11 25320926 25322934 -123460538 + L1PB4 LINE L1 4093 6151 -5 422 143 13 0 chr11 25323114 25323191 -123460281 + (TA)n Simple_repeat Simple_repeat 2 79 0 24 0 0 0 chr11 25323245 25323269 -123460203 + AT_rich Low_complexity Low_complexity 1 24 0 369 208 19 75 chr11 25323416 25323522 -123459950 + MIR SINE MIR 160 259 -3 22 35 0 0 chr11 25324460 25324489 -123458983 + AT_rich Low_complexity Low_complexity 1 29 0 268 181 84 48 chr11 25324873 25324956 -123458516 - MER39 LTR ERV1 -5 702 617 25 51 0 0 chr11 25325042 25325081 -123458391 + AT_rich Low_complexity Low_complexity 1 39 0 634 226 51 0 chr11 25325211 25325388 -123458084 + L1MB7 LINE L1 4959 5144 -1002 * 7176 176 27 35 chr11 25325386 25327393 -123456079 + L1P3 LINE L1 1 1997 -4464 1417 193 53 92 chr11 25327393 25327930 -123455542 - LTR22A LTR ERVK 0 458 1 3502 172 22 0 chr11 25327930 25328553 -123454919 + L1P3 LINE L1 1992 2628 -3833 3477 234 43 16 chr11 25328536 25329577 -123453895 + L1MB7 LINE L1 5114 6176 -8 * 328 215 13 0 chr11 25330368 25330447 -123453025 - MLT1K LTR MaLR -162 426 347 213 367 28 18 chr11 25330946 25331055 -123452417 + MIR SINE MIR 5 114 -148 195 333 0 0 chr11 25331087 25331141 -123452331 + MIR SINE MIR 209 262 0 433 224 16 0 chr11 25331516 25331641 -123451831 + (TG)n Simple_repeat Simple_repeat 2 128 0 2118 114 4 0 chr11 25331657 25331937 -123451535 - AluSx SINE Alu -18 294 14 189 393 0 0 chr11 25332616 25332677 -123450795 - L2 LINE L2 -208 3064 3004 1111 252 65 42 chr11 25333993 25334492 -123448980 + MER34B LTR ERV1 5 565 0 976 188 11 5 chr11 25335148 25335334 -123448138 + Tigger1 DNA MER2_type 1 187 -2231 897 128 0 0 chr11 25335334 25335487 -123447985 - AluSg/x SINE Alu 0 309 157 3124 155 95 10 chr11 25335488 25336101 -123447371 + Tigger1 DNA MER2_type 185 849 -1569 345 24 0 0 chr11 25336357 25336399 -123447073 + (CA)n Simple_repeat Simple_repeat 2 43 0 338 296 76 43 chr11 25336775 25337052 -123446420 - L1ME LINE L1 -307 5814 5529 25 65 0 0 chr11 25337089 25337135 -123446337 + AT_rich Low_complexity Low_complexity 1 46 0 337 357 14 29 chr11 25338712 25338852 -123444620 - MIR3 SINE MIR -69 139 2 333 369 15 46 chr11 25339602 25339797 -123443675 + MIR SINE MIR 20 208 -54 249 139 0 0 chr11 25340728 25340771 -123442701 + (CA)n Simple_repeat Simple_repeat 2 44 0 684 295 174 35 chr11 25340895 25341845 -123441627 - L1ME LINE L1 -2348 3798 2717 2398 201 56 8 chr11 25341990 25342472 -123441000 + MER21A LTR ERV1 427 931 0 5250 178 50 33 chr11 25342532 25342689 -123440783 + MER21-int LTR ERV1 3084 3237 -3521 4002 163 85 26 chr11 25342689 25343540 -123439932 - MER4D LTR ERV1 0 903 3 5250 178 50 33 chr11 25343540 25343929 -123439543 + MER21-int LTR ERV1 3237 3618 -3140 2178 123 3 0 chr11 25343929 25344229 -123439243 - AluSq SINE Alu -12 301 1 5250 178 50 33 chr11 25344229 25344792 -123438680 + MER21-int LTR ERV1 3618 4212 -2546 777 183 0 0 chr11 25344796 25344922 -123438550 + FLAM_C SINE Alu 1 126 -17 3091 219 13 14 chr11 25344969 25345596 -123437876 + MER21-int LTR ERV1 1218 1843 -2348 792 225 88 4 chr11 25345596 25345883 -123437589 + MER21B LTR ERV1 171 501 -362 28 0 0 0 chr11 25346227 25346255 -123437217 + AT_rich Low_complexity Low_complexity 1 28 0 375 335 7 0 chr11 25346760 25346912 -123436560 - HAL1 LINE L1 -956 1551 1399 24 0 0 0 chr11 25347366 25347390 -123436082 + AT_rich Low_complexity Low_complexity 1 24 0 1343 183 41 59 chr11 25349057 25349434 -123434038 - MLT2B3 LTR ERVL 0 554 192 996 190 19 9 chr11 25349504 25349715 -123433757 - MLT2B3 LTR ERVL -341 213 1 208 269 0 0 chr11 25350250 25350302 -123433170 + (TA)n Simple_repeat Simple_repeat 1 52 0 2135 113 3 0 chr11 25350336 25350628 -123432844 + AluSc SINE Alu 1 293 -16 11076 175 118 12 chr11 25350638 25353117 -123430355 + L1PBa LINE L1 128 2968 -3894 2188 122 0 3 chr11 25353117 25353440 -123430032 + AluSx SINE Alu 3 312 0 11076 175 118 12 chr11 25353440 25353868 -123429604 + L1PBa LINE L1 2968 3349 -3513 14092 198 22 14 chr11 25353968 25354266 -123429206 + L1PB1 LINE L1 2588 2882 -3985 1995 143 0 3 chr11 25354266 25354587 -123428885 + AluSx SINE Alu 5 312 0 14092 198 22 14 chr11 25354587 25358174 -123425298 + L1PB1 LINE L1 2882 6507 -360 779 137 12 8 chr11 25358174 25358416 -123425056 + (TA)n Simple_repeat Simple_repeat 1 243 0 2320 128 8 3 chr11 25358453 25358820 -123424652 + L1PB1 LINE L1 6499 6867 0 223 325 86 0 chr11 25359344 25359461 -123424011 - MIR SINE MIR -58 204 78 1339 218 71 67 chr11 25360808 25361244 -123422228 + MER74A LTR ERVL 121 558 0 308 324 27 18 chr11 25361483 25361594 -123421878 - MER5A DNA MER1_type -3 186 75 356 296 45 22 chr11 25362923 25363102 -123420370 + MIR SINE MIR 76 258 -4 205 196 0 54 chr11 25363541 25363597 -123419875 - MIR SINE MIR -1 261 209 486 0 0 0 chr11 25363716 25363770 -123419702 + (GGAA)n Simple_repeat Simple_repeat 2 55 0 32 86 0 0 chr11 25363844 25363925 -123419547 + AT_rich Low_complexity Low_complexity 1 81 0 22 56 0 0 chr11 25363941 25363977 -123419495 + AT_rich Low_complexity Low_complexity 1 36 0 207 0 0 0 chr11 25364009 25364032 -123419440 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 307 341 132 49 chr11 25364605 25364992 -123418480 - L3 LINE CR1 -73 1504 1086 1390 175 37 28 chr11 25366493 25366819 -123416653 - L1MA8 LINE L1 -172 6119 5791 195 321 83 0 chr11 25367333 25367417 -123416055 + MIR SINE MIR 111 201 -61 1338 186 39 29 chr11 25367966 25368314 -123415158 - L1MA8 LINE L1 -172 6119 5767 345 284 99 0 chr11 25368779 25368920 -123414552 + MIR SINE MIR 85 239 -23 341 282 195 40 chr11 25369267 25369416 -123414056 + MER5A DNA MER1_type 10 181 -8 292 267 183 8 chr11 25371494 25371614 -123411858 + MIR SINE MIR 49 189 -73 288 130 0 0 chr11 25371682 25371728 -123411744 + (CCA)n Simple_repeat Simple_repeat 1 46 0 345 347 111 11 chr11 25371835 25372025 -123411447 + MIR SINE MIR 32 240 -22 834 113 127 7 chr11 25372925 25373075 -123410397 + THE1B LTR MaLR 197 364 0 390 346 35 48 chr11 25373215 25373443 -123410029 - L2 LINE L2 -530 2784 2560 209 179 0 0 chr11 25373495 25373534 -123409938 + (TG)n Simple_repeat Simple_repeat 2 40 0 200 312 128 16 chr11 25373691 25373816 -123409656 + MIR SINE MIR 79 217 -45 238 261 43 14 chr11 25374356 25374425 -123409047 + MIR SINE MIR 140 210 -52 222 250 188 18 chr11 25374432 25374544 -123408928 - MIR SINE MIR -118 144 14 23 0 0 0 chr11 25374670 25374693 -123408779 + AT_rich Low_complexity Low_complexity 1 23 0 375 98 0 0 chr11 25375374 25375435 -123408037 - L1MA3 LINE L1 0 6305 6245 414 235 61 62 chr11 25375509 25375728 -123407744 - L1MC/D LINE L1 -726 5428 5298 1569 195 19 75 chr11 25375728 25376139 -123407333 - MLT1B LTR MaLR -2 388 1 414 235 61 62 chr11 25376139 25376184 -123407288 - L1MC/D LINE L1 -856 5298 5254 205 200 0 0 chr11 25376401 25376441 -123407031 + (TA)n Simple_repeat Simple_repeat 1 40 0 326 297 109 38 chr11 25376550 25376863 -123406609 - L1MC/D LINE L1 -1314 4832 4498 247 308 76 26 chr11 25376895 25377236 -123406236 - L1MC/D LINE L1 -1717 4429 4072 1576 190 3 7 chr11 25377267 25377556 -123405916 - AluJb SINE Alu -24 288 1 1529 174 3 24 chr11 25378058 25378346 -123405126 - AluJo SINE Alu -30 282 1 1252 280 73 19 chr11 25378346 25378882 -123404590 - L1ME3 LINE L1 -334 5762 5198 2017 138 3 0 chr11 25378963 25379254 -123404218 - AluSx SINE Alu -20 292 1 1980 129 82 18 chr11 25379313 25379655 -123403817 + THE1B LTR MaLR 1 364 0 24 32 0 0 chr11 25379874 25379905 -123403567 + AT_rich Low_complexity Low_complexity 1 31 0 551 294 90 22 chr11 25379908 25380275 -123403197 - L1ME3 LINE L1 -1313 4767 4376 390 274 144 5 chr11 25380310 25380525 -123402947 - L1ME3 LINE L1 -1894 4186 3942 1963 47 63 4 chr11 25380915 25381201 -123402271 + AluY SINE Alu 13 313 0 274 223 175 19 chr11 25381224 25381327 -123402145 + MLT1F LTR MaLR 408 526 -16 514 275 100 46 chr11 25381355 25381744 -123401728 - L1ME3 LINE L1 -2234 3846 3437 23 78 0 0 chr11 25381816 25381867 -123401605 + AT_rich Low_complexity Low_complexity 1 51 0 726 316 18 18 chr11 25382024 25382302 -123401170 - MLT1H LTR MaLR -271 278 1 264 197 13 26 chr11 25382388 25382464 -123401008 - L1ME3 LINE L1 -5954 116 42 23 0 0 0 chr11 25383171 25383194 -123400278 + AT_rich Low_complexity Low_complexity 1 23 0 1505 243 36 90 chr11 25383269 25383858 -123399614 + MER92B LTR ERV1 3 559 -77 2357 125 22 22 chr11 25383895 25384175 -123399297 + L1PA14 LINE L1 5755 6037 -124 2313 62 3 26 chr11 25384175 25384480 -123398992 + AluY SINE Alu 1 298 -13 2357 125 22 22 chr11 25384480 25384606 -123398866 + L1PA14 LINE L1 6036 6161 0 26 50 0 0 chr11 25384854 25384894 -123398578 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr11 25384964 25384987 -123398485 + AT_rich Low_complexity Low_complexity 1 23 0 1971 128 3 0 chr11 25384987 25385275 -123398197 - AluSx SINE Alu -23 289 1 268 342 8 0 chr11 25385283 25385400 -123398072 - L1MC4 LINE L1 -1030 7012 6895 22 0 0 0 chr11 25385722 25385744 -123397728 + AT_rich Low_complexity Low_complexity 1 22 0 214 365 141 5 chr11 25385783 25385975 -123397497 - MIR SINE MIR 0 262 45 203 400 65 6 chr11 25386196 25386366 -123397106 - L2 LINE L2 -189 3083 2904 396 0 0 0 chr11 25386582 25386626 -123396846 + (CA)n Simple_repeat Simple_repeat 1 44 0 449 153 14 0 chr11 25386643 25386715 -123396757 + MER2 DNA MER2_type 48 120 -225 1172 82 33 49 chr11 25387564 25387748 -123395724 - L1PA8 LINE L1 0 6172 5992 345 115 115 26 chr11 25387756 25387834 -123395638 + MER2 DNA MER2_type 123 207 -138 2000 138 0 22 chr11 25387894 25388206 -123395266 + AluSx SINE Alu 1 305 -7 428 171 12 0 chr11 25388249 25388331 -123395141 - AluS SINE Alu -230 83 1 923 276 133 13 chr11 25389052 25389367 -123394105 - LTR18A LTR ERVL 0 357 5 643 306 67 63 chr11 25389657 25389890 -123393582 + MLT1J LTR MaLR 1 232 -279 7818 26 6 0 chr11 25389890 25391588 -123391884 - L1PA3 LINE L1 -3 6152 4449 643 306 67 63 chr11 25391588 25391861 -123391611 + MLT1J LTR MaLR 232 509 -2 3537 128 17 25 chr11 25392205 25392236 -123391236 - L1M1 LINE L1 -4371 3194 3164 3735 104 5 19 chr11 25392236 25392812 -123390660 - L1MA2 LINE L1 0 6304 5737 3537 128 17 25 chr11 25392812 25393411 -123390061 - L1M1 LINE L1 -4401 3164 2569 5464 101 7 20 chr11 25393423 25393732 -123389740 - L1PA8A LINE L1 -1 6130 5818 258 56 0 0 chr11 25393732 25393768 -123389704 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1798 97 101 0 chr11 25393768 25394025 -123389447 - AluY SINE Alu -28 283 1 5464 101 7 20 chr11 25394025 25394549 -123388923 - L1PA8A LINE L1 -311 5820 5307 3959 190 42 7 chr11 25394542 25395314 -123388158 - L1M1 LINE L1 -6755 810 12 * 347 236 42 0 chr11 25395317 25395389 -123388083 - MER5A DNA MER1_type -114 75 1 363 78 0 0 chr11 25395520 25395571 -123387901 + (TG)n Simple_repeat Simple_repeat 2 52 0 29 28 0 0 chr11 25396870 25396906 -123386566 + AT_rich Low_complexity Low_complexity 1 36 0 2009 189 100 23 chr11 25397083 25397553 -123385919 - L1MC1 LINE L1 -19 6314 5809 597 174 22 22 chr11 25397565 25397743 -123385729 + GA-rich Low_complexity Low_complexity 3 180 0 341 286 94 16 chr11 25397749 25397941 -123385531 - L2 LINE L2 -1209 2105 1899 389 270 40 24 chr11 25399088 25399214 -123384258 + MIR SINE MIR 129 256 -6 459 313 133 9 chr11 25400080 25400313 -123383159 - MIR SINE MIR 0 262 1 21 36 0 0 chr11 25400834 25400862 -123382610 + AT_rich Low_complexity Low_complexity 1 28 0 316 183 0 0 chr11 25401469 25401529 -123381943 - HsTC2 DNA Tc2 -1835 63 4 276 167 0 19 chr11 25401617 25401671 -123381801 - MLT1A1 LTR MaLR -269 96 44 3469 168 39 68 chr11 25401695 25401968 -123381504 + MER54B LTR ERVL 61 340 -453 266 0 0 29 chr11 25401968 25402003 -123381469 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3469 168 39 68 chr11 25402003 25402483 -123380989 + MER54B LTR ERVL 340 792 -1 22 0 0 0 chr11 25403281 25403303 -123380169 + AT_rich Low_complexity Low_complexity 1 22 0 2121 114 24 32 chr11 25403453 25403831 -123379641 + THE1C LTR MaLR 1 375 0 186 43 0 0 chr11 25405675 25405698 -123377774 + (T)n Simple_repeat Simple_repeat 1 23 0 301 328 174 24 chr11 25405829 25406076 -123377396 + L1MC/D LINE L1 5353 5636 -2172 197 136 0 45 chr11 25406119 25406163 -123377309 + (CATATA)n Simple_repeat Simple_repeat 2 43 0 27 0 0 0 chr11 25407200 25407227 -123376245 + AT_rich Low_complexity Low_complexity 1 27 0 268 406 104 0 chr11 25408973 25409175 -123374297 + L2 LINE L2 2690 2912 -402 231 300 0 0 chr11 25409666 25409726 -123373746 + L2 LINE L2 3213 3272 0 264 309 64 45 chr11 25410835 25410945 -123372527 + MIR3 SINE MIR 44 155 -53 296 318 93 13 chr11 25411157 25411308 -123372164 - MIR SINE MIR -69 193 31 408 273 30 38 chr11 25411542 25411674 -123371798 + MIR SINE MIR 98 228 -34 23 33 0 0 chr11 25411813 25411843 -123371629 + AT_rich Low_complexity Low_complexity 1 30 0 285 291 60 34 chr11 25412047 25412164 -123371308 - MIR3 SINE MIR -2 206 87 26 0 0 0 chr11 25412343 25412369 -123371103 + AT_rich Low_complexity Low_complexity 1 26 0 2411 76 0 0 chr11 25413353 25413654 -123369818 - AluY SINE Alu -9 302 2 582 262 142 21 chr11 25414303 25414536 -123368936 - MIR SINE MIR 0 262 2 2310 134 27 61 chr11 25414638 25415079 -123368393 + MSTB LTR MaLR 1 426 0 480 251 107 74 chr11 25416350 25416565 -123366907 + L2 LINE L2 1975 2196 -1118 662 267 98 36 chr11 25416594 25416728 -123366744 - L2 LINE L2 -700 2614 2490 824 153 0 7 chr11 25416728 25416872 -123366600 + L1PA15 LINE L1 6019 6161 -4 662 267 98 36 chr11 25416872 25417014 -123366458 - L2 LINE L2 -824 2490 2321 682 349 31 66 chr11 25417036 25417520 -123365952 - MLT2F LTR ERVL -13 650 184 401 327 69 27 chr11 25417555 25417815 -123365657 + L2 LINE L2 2968 3238 -75 368 215 0 0 chr11 25417986 25418065 -123365407 + MER116 DNA Mariner 1 79 -1 215 200 0 0 chr11 25418127 25418162 -123365310 + (TG)n Simple_repeat Simple_repeat 2 36 0 210 116 23 23 chr11 25419119 25419162 -123364310 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 33 56 0 0 chr11 25419756 25419810 -123363662 + AT_rich Low_complexity Low_complexity 1 54 0 1681 204 63 37 chr11 25420527 25420887 -123362585 + MER39 LTR ERV1 260 634 -73 2104 105 10 26 chr11 25420887 25421193 -123362279 - AluSx SINE Alu -11 301 1 1681 204 63 37 chr11 25421193 25421263 -123362209 + MER39 LTR ERV1 634 701 -6 361 194 0 0 chr11 25421998 25422065 -123361407 + MER63 DNA MER1_type 681 747 -313 303 268 12 12 chr11 25422070 25422152 -123361320 + MER63 DNA MER1_type 980 1061 0 293 221 197 33 chr11 25422524 25422646 -123360826 + LTR16C LTR ERVL 350 491 0 1571 138 0 63 chr11 25422896 25422964 -123360508 + AluSx SINE Alu 45 116 -196 2129 128 33 19 chr11 25422964 25423323 -123360149 + THE1B LTR MaLR 1 364 0 1571 138 0 63 chr11 25423323 25423522 -123359950 + AluSx SINE Alu 116 295 -17 1269 212 111 55 chr11 25423549 25424033 -123359439 + MER39 LTR ERV1 9 705 -2 273 219 0 31 chr11 25424158 25424222 -123359250 + MER21B LTR ERV1 1 62 -801 2644 152 122 50 chr11 25424613 25425300 -123358172 - L1MB3 LINE L1 -264 5919 5185 832 214 3 5 chr11 25425318 25425637 -123357835 - MLT1A1 LTR MaLR 0 365 1 1043 200 8 12 chr11 25425637 25425887 -123357585 + L1MB3 LINE L1 5928 6176 -7 1620 245 52 23 chr11 25425936 25426450 -123357022 + L1ME3A LINE L1 5642 6170 0 254 315 34 0 chr11 25426461 25426550 -123356922 - MIR SINE MIR -111 151 60 21 57 0 0 chr11 25426889 25426924 -123356548 + AT_rich Low_complexity Low_complexity 1 35 0 180 97 0 0 chr11 25427796 25427827 -123355645 + (T)n Simple_repeat Simple_repeat 1 31 0 184 228 88 35 chr11 25427953 25428010 -123355462 - L2 LINE L2 -2482 832 773 385 334 15 6 chr11 25428596 25428756 -123354716 - MIR SINE MIR -67 141 29 2095 105 24 0 chr11 25428758 25429052 -123354420 - AluSg SINE Alu -9 301 1 192 277 84 25 chr11 25429059 25429178 -123354294 + MIR SINE MIR 72 197 -65 1144 218 83 0 chr11 25429879 25430131 -123353341 + AluJo SINE Alu 9 281 -31 21 57 0 0 chr11 25430139 25430174 -123353298 + AT_rich Low_complexity Low_complexity 1 35 0 205 161 0 0 chr11 25430220 25430251 -123353221 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 498 324 31 18 chr11 25430784 25431006 -123352466 + MIR SINE MIR 35 259 -3 622 335 69 4 chr11 25431174 25431419 -123352053 - MIR SINE MIR -1 261 1 212 292 52 21 chr11 25431845 25431941 -123351531 - MIR SINE MIR -156 106 8 360 0 0 0 chr11 25432364 25432404 -123351068 + (CA)n Simple_repeat Simple_repeat 1 40 0 268 287 35 17 chr11 25432705 25432820 -123350652 + MARNA DNA Mariner 246 362 -224 24 0 0 0 chr11 25432823 25432847 -123350625 + AT_rich Low_complexity Low_complexity 1 24 0 256 296 160 0 chr11 25436290 25436415 -123347057 + MER67D LTR ERV1 370 514 0 265 380 64 11 chr11 25437279 25437466 -123346006 + MIR SINE MIR 54 250 -12 2045 129 3 3 chr11 25437502 25437797 -123345675 - AluSc SINE Alu -14 295 1 24 32 0 0 chr11 25438289 25438320 -123345152 + AT_rich Low_complexity Low_complexity 1 31 0 263 286 0 0 chr11 25438772 25438835 -123344637 - L2 LINE L2 -820 2494 2432 1237 322 110 48 chr11 25438866 25439142 -123344330 - L2 LINE L2 -964 2350 2092 2017 136 0 0 chr11 25439142 25439451 -123344021 + AluSx SINE Alu 1 309 0 1237 322 110 48 chr11 25439451 25439991 -123343481 - L2 LINE L2 -1222 2092 1475 1981 190 11 8 chr11 25439991 25440355 -123343117 + MLT1A1 LTR MaLR 1 365 0 1237 322 110 48 chr11 25440355 25440402 -123343070 - L2 LINE L2 -1839 1475 1432 265 321 30 23 chr11 25440418 25440549 -123342923 - LTR33 LTR ERVL -4 517 386 311 341 16 23 chr11 25440706 25440835 -123342637 - LTR33 LTR ERVL -354 167 40 183 242 0 0 chr11 25440879 25440912 -123342560 - L2 LINE L2 -1898 1416 1384 1160 227 14 101 chr11 25440913 25441370 -123342102 + MLT2D LTR ERVL 3 520 0 401 240 0 158 chr11 25441370 25441458 -123342014 - L2 LINE L2 -1925 1389 1289 2327 108 0 0 chr11 25441458 25441765 -123341707 + AluSg SINE Alu 1 307 -3 401 240 0 158 chr11 25441765 25441922 -123341550 - L2 LINE L2 -2025 1289 1183 579 146 0 10 chr11 25441924 25442020 -123341452 + HSMAR2 DNA Mariner 253 347 -955 447 227 31 10 chr11 25442021 25442118 -123341354 + FLAM_A SINE Alu 1 99 -43 381 159 55 5 chr11 25443216 25443437 -123340035 + (TA)n Simple_repeat Simple_repeat 1 232 0 31 0 0 0 chr11 25443729 25443760 -123339712 + AT_rich Low_complexity Low_complexity 1 31 0 281 347 0 10 chr11 25444095 25444193 -123339279 + MIR3 SINE MIR 99 195 -13 226 245 0 0 chr11 25447215 25447264 -123336208 - L2 LINE L2 -3 3310 3262 235 261 0 0 chr11 25447294 25447340 -123336132 + polypurine Low_complexity Low_complexity 2 47 0 272 234 360 9 chr11 25447993 25448104 -123335368 + MER5A DNA MER1_type 37 186 -3 669 67 0 0 chr11 25448706 25448796 -123334676 + L1PA6 LINE L1 6062 6151 -3 206 103 0 26 chr11 25449333 25449372 -123334100 + (CAT)n Simple_repeat Simple_repeat 2 39 0 1120 260 62 52 chr11 25449814 25450314 -123333158 - MLT1D LTR MaLR 0 505 1 298 245 9 28 chr11 25451245 25451351 -123332121 + CT-rich Low_complexity Low_complexity 4 107 0 1496 204 9 46 chr11 25451503 25451827 -123331645 - AluJo SINE Alu 0 312 1 251 182 0 0 chr11 25451947 25451991 -123331481 - L2 LINE L2 -2 3311 3268 274 224 26 13 chr11 25452059 25452135 -123331337 + L1MB1 LINE L1 6097 6173 -16 2318 70 3 3 chr11 25452653 25452951 -123330521 + AluY SINE Alu 1 298 -13 21 57 0 0 chr11 25454895 25454930 -123328542 + AT_rich Low_complexity Low_complexity 1 35 0 281 169 15 15 chr11 25454961 25455026 -123328446 + LTR60 LTR ERV1 4 68 -518 351 113 0 0 chr11 25455030 25455083 -123328389 - MLT2A1 LTR ERVL -1 443 391 296 130 81 0 chr11 25455087 25455248 -123328224 + (TA)n Simple_repeat Simple_repeat 1 174 0 317 158 68 0 chr11 25455272 25455585 -123327887 + (TA)n Simple_repeat Simple_repeat 1 334 0 279 0 0 0 chr11 25455584 25455615 -123327857 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 2551 109 16 11 chr11 25455626 25456003 -123327469 - MLT2A1 LTR ERVL -65 379 1 1025 244 84 19 chr11 25456120 25456431 -123327041 + LTR43 LTR ERV1 132 462 -140 234 226 87 35 chr11 25456482 25456597 -123326875 + LTR43 LTR ERV1 462 582 -20 960 211 61 76 chr11 25456913 25457318 -123326154 + MLT1C LTR MaLR 8 378 -12 2164 126 22 22 chr11 25457933 25458297 -123325175 - THE1B LTR MaLR 0 364 1 2129 129 0 3 chr11 25459858 25460168 -123323304 + AluSx SINE Alu 3 311 -1 5591 157 35 3 chr11 25460420 25461429 -123322043 - L1MA6 LINE L1 -6 6294 5254 1822 123 87 0 chr11 25461540 25461816 -123321656 + AluSx SINE Alu 1 300 -12 923 263 7 25 chr11 25462371 25462652 -123320820 + MER93b LTR ERV1 98 373 0 241 194 0 28 chr11 25462851 25462882 -123320590 + A-rich Low_complexity Low_complexity 2 32 -39 1690 153 0 29 chr11 25462882 25463163 -123320309 + AluSx SINE Alu 3 275 -37 241 194 0 28 chr11 25463163 25463203 -123320269 + A-rich Low_complexity Low_complexity 32 71 0 826 178 0 0 chr11 25463889 25464024 -123319448 + AluJo SINE Alu 1 135 -177 2337 90 3 0 chr11 25464024 25464334 -123319138 + AluY SINE Alu 1 311 0 794 180 1 0 chr11 25464371 25464527 -123318945 + L1 LINE L1 3830 3986 -2160 644 217 31 0 chr11 25465107 25465236 -123318236 - FLAM_C SINE Alu -8 135 3 24 32 0 0 chr11 25465255 25465286 -123318186 + AT_rich Low_complexity Low_complexity 1 31 0 1722 155 7 35 chr11 25465286 25465576 -123317896 - AluJb SINE Alu -30 282 1 24 77 0 0 chr11 25466760 25466812 -123316660 + AT_rich Low_complexity Low_complexity 1 52 0 30 69 0 0 chr11 25466883 25466941 -123316531 + AT_rich Low_complexity Low_complexity 1 58 0 219 333 46 0 chr11 25467026 25467113 -123316359 + MER5B DNA MER1_type 87 177 -1 847 186 102 8 chr11 25467428 25467664 -123315808 - MER33 DNA MER1_type -35 289 32 30 45 0 0 chr11 25467927 25467971 -123315501 + AT_rich Low_complexity Low_complexity 1 44 0 226 258 101 22 chr11 25468276 25468365 -123315107 - MLT1J LTR MaLR -24 487 392 2111 152 87 20 chr11 25468461 25468862 -123314610 + MSTA LTR MaLR 1 428 0 2518 215 25 7 chr11 25519552 25520119 -123263353 + L1MD3 LINE L1 7414 7990 -5 25 83 0 0 chr11 25520206 25520266 -123263206 + AT_rich Low_complexity Low_complexity 1 60 0 6567 62 0 39 chr11 25520270 25521649 -123261823 + L1PA5 LINE L1 4836 6151 -3 24 85 0 0 chr11 25521649 25521708 -123261764 + AT_rich Low_complexity Low_complexity 1 59 0 255 203 127 13 chr11 25521973 25522052 -123261420 - L1MA4A LINE L1 -27 6276 6189 3625 162 23 16 chr11 25522056 25522792 -123260680 - L1MA4A LINE L1 -181 6122 5382 39 22 0 0 chr11 25523487 25523533 -123259939 + AT_rich Low_complexity Low_complexity 1 46 0 981 129 6 0 chr11 25523539 25523702 -123259770 + L1MA4A LINE L1 6136 6299 -4 197 65 32 0 chr11 25524523 25524554 -123258918 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1765 154 7 7 chr11 25524556 25524836 -123258636 - AluSx SINE Alu -32 280 1 1771 149 25 4 chr11 25524852 25525127 -123258345 - AluSx SINE Alu -29 283 3 21 0 0 0 chr11 25525428 25525449 -123258023 + AT_rich Low_complexity Low_complexity 1 21 0 208 273 200 27 chr11 25526512 25526622 -123256850 - L2 LINE L2 -1 3271 3143 231 364 81 29 chr11 25526751 25526960 -123256512 - L2 LINE L2 -226 3046 2827 207 0 0 0 chr11 25527458 25527481 -123255991 + (CA)n Simple_repeat Simple_repeat 2 24 0 589 294 43 5 chr11 25527788 25527975 -123255497 - MLT1L LTR MaLR -5 610 417 33 25 0 0 chr11 25529385 25529425 -123254047 + AT_rich Low_complexity Low_complexity 1 40 0 236 310 0 0 chr11 25529536 25529607 -123253865 + MIR SINE MIR 79 149 -113 1313 158 39 28 chr11 25529704 25529989 -123253483 + L1MC1 LINE L1 6044 6331 -2 1903 174 7 0 chr11 25529999 25530309 -123253163 + AluSx SINE Alu 1 312 0 421 178 31 141 chr11 25530312 25530475 -123252997 + L1MD3 LINE L1 6970 7114 -881 472 239 0 0 chr11 25530476 25530568 -123252904 + MLT1F1 LTR MaLR 34 125 -442 4499 188 19 21 chr11 25530574 25531178 -123252294 + L1PB3 LINE L1 4125 4729 -1425 186 43 0 0 chr11 25531178 25531201 -123252271 + (CAA)n Simple_repeat Simple_repeat 2 24 0 4499 188 19 21 chr11 25531201 25532270 -123251202 + L1PB3 LINE L1 4729 5792 -362 183 156 0 0 chr11 25532349 25532381 -123251091 + (TA)n Simple_repeat Simple_repeat 2 33 0 1677 192 3 0 chr11 25532382 25532684 -123250788 + L1PB3 LINE L1 5784 6086 -68 2456 76 0 16 chr11 25532687 25533003 -123250469 + AluY SINE Alu 1 311 0 7266 165 16 21 chr11 25533103 25534554 -123248918 - L1P LINE L1 -2597 3549 2106 22 0 0 0 chr11 25534658 25534680 -123248792 + AT_rich Low_complexity Low_complexity 1 22 0 263 374 43 0 chr11 25534830 25534989 -123248483 - L2 LINE L2 -356 2916 2770 22 0 0 0 chr11 25535126 25535148 -123248324 + AT_rich Low_complexity Low_complexity 1 22 0 234 62 0 0 chr11 25535506 25535538 -123247934 + (TTG)n Simple_repeat Simple_repeat 2 33 0 264 379 0 0 chr11 25535757 25535852 -123247620 - MIR SINE MIR -148 114 20 1149 220 55 42 chr11 25535960 25536342 -123247130 - MLT1B LTR MaLR -3 387 1 216 0 0 0 chr11 25536782 25536806 -123246666 + (A)n Simple_repeat Simple_repeat 1 24 0 21 36 0 0 chr11 25537306 25537334 -123246138 + AT_rich Low_complexity Low_complexity 1 28 0 377 249 35 35 chr11 25537650 25537823 -123245649 + (CATATA)n Simple_repeat Simple_repeat 4 176 0 24 0 0 0 chr11 25537959 25537983 -123245489 + AT_rich Low_complexity Low_complexity 1 24 0 27 49 0 0 chr11 25538268 25538309 -123245163 + AT_rich Low_complexity Low_complexity 1 41 0 334 324 144 14 chr11 25539044 25539266 -123244206 + MIR SINE MIR 12 262 0 230 265 0 0 chr11 25539981 25540030 -123243442 + L2 LINE L2 3219 3267 -5 25 83 0 0 chr11 25540486 25540546 -123242926 + AT_rich Low_complexity Low_complexity 1 60 0 278 316 0 0 chr11 25540878 25540954 -123242518 - L2 LINE L2 -298 2974 2899 2558 102 45 0 chr11 25541318 25541699 -123241773 - MER41B LTR ERV1 -236 399 2 5875 110 16 17 chr11 25541879 25542855 -123240617 + L1PA14 LINE L1 5185 6159 -2 196 74 0 0 chr11 25543769 25543796 -123239676 + MER5B DNA MER1_type 8 34 -144 356 234 19 56 chr11 25543871 25543978 -123239494 + MER5B DNA MER1_type 75 177 -1 181 133 133 22 chr11 25544344 25544389 -123239083 + L3 LINE CR1 369 418 -1159 234 0 0 0 chr11 25544599 25544625 -123238847 + (TA)n Simple_repeat Simple_repeat 1 26 0 411 375 45 15 chr11 25545748 25546015 -123237457 - L2 LINE L2 -899 2415 2141 1301 234 110 11 chr11 25546225 25546597 -123236875 - MER63B DNA MER1_type 0 436 28 279 0 0 0 chr11 25546611 25546642 -123236830 + (TG)n Simple_repeat Simple_repeat 2 32 0 28 29 0 0 chr11 25546823 25546858 -123236614 + AT_rich Low_complexity Low_complexity 1 35 0 628 331 20 28 chr11 25546983 25547231 -123236241 + MIR SINE MIR 4 249 -13 413 286 56 31 chr11 25547927 25548088 -123235384 - MER5B DNA MER1_type -4 174 10 706 264 146 65 chr11 25548982 25549380 -123234092 - LTR16B LTR ERVL -13 451 22 341 245 41 10 chr11 25550080 25550178 -123233294 + MLT1G LTR MaLR 2 102 -488 25 75 0 0 chr11 25550392 25550445 -123233027 + AT_rich Low_complexity Low_complexity 1 53 0 221 293 13 13 chr11 25550929 25551004 -123232468 + L2 LINE L2 2986 3060 -212 4841 115 8 0 chr11 25551046 25552137 -123231335 - L1PB2 LINE L1 -1 6150 5158 376 336 16 8 chr11 25552556 25552678 -123230794 + L2 LINE L2 3191 3313 0 353 318 13 0 chr11 25553544 25553698 -123229774 - L1MEc LINE L1 -3671 3286 3131 23 0 0 0 chr11 25553724 25553747 -123229725 + AT_rich Low_complexity Low_complexity 1 23 0 1671 231 35 79 chr11 25553759 25553903 -123229569 - L1M4 LINE L1 -914 5232 5083 2091 109 0 0 chr11 25553903 25554177 -123229295 - AluSg SINE Alu -36 274 1 1671 231 35 79 chr11 25554177 25554769 -123228703 - L1M4 LINE L1 -1063 5083 4528 307 288 21 68 chr11 25555046 25555125 -123228347 - L1MEc LINE L1 -4465 2673 2592 1653 184 0 16 chr11 25555125 25555430 -123228042 + AluJb SINE Alu 1 300 -12 307 288 21 68 chr11 25555430 25555541 -123227931 - L1MEc LINE L1 -4546 2592 2492 484 318 52 9 chr11 25555542 25555775 -123227697 - L1MEc LINE L1 -4719 2419 2177 441 317 91 2 chr11 25555999 25556243 -123227229 - L1MEc LINE L1 -5237 1757 1360 182 176 20 0 chr11 25556294 25556345 -123227127 + CT-rich Low_complexity Low_complexity 1 52 0 287 141 16 0 chr11 25556576 25556640 -123226832 + T-rich Low_complexity Low_complexity 1 65 0 9584 32 1 0 chr11 25556640 25558555 -123224917 - L1PA3 LINE L1 -3 6152 4235 28 48 0 0 chr11 25558911 25558953 -123224519 + AT_rich Low_complexity Low_complexity 1 42 0 704 180 11 17 chr11 25559350 25559528 -123223944 + GA-rich Low_complexity Low_complexity 3 179 0 724 117 63 0 chr11 25559567 25559678 -123223794 - AluSc SINE Alu -187 122 5 709 126 0 0 chr11 25559785 25559888 -123223584 - LTR12 LTR ERV1 0 714 612 336 221 12 0 chr11 25559888 25559974 -123223498 - LTR30 LTR ERV1 -80 642 556 1954 70 3 127 chr11 25559974 25560304 -123223168 - LTR12 LTR ERV1 -425 289 1 5576 95 1 11 chr11 25560307 25561087 -123222385 - HERV9 LTR ERV1 -2 8397 7626 2350 182 116 64 chr11 25561085 25561942 -123221530 - Harlequin LTR ERV1 -5156 1740 840 * 28393 96 16 8 chr11 25561909 25566723 -123216749 - Harlequin LTR ERV1 -3419 4980 40 708 159 7 76 chr11 25566691 25566836 -123216636 - pTR5 LTR ERV1 -2001 437 303 * 406 263 17 0 chr11 25566838 25566956 -123216516 - LTR30 LTR ERV1 -79 643 524 1727 61 7 138 chr11 25566956 25567253 -123216219 - LTR12 LTR ERV1 -456 258 1 2100 138 0 0 chr11 25567339 25567655 -123215817 + AluSx SINE Alu 2 317 0 186 339 36 0 chr11 25567657 25567713 -123215759 - MIR SINE MIR -182 80 23 575 237 12 64 chr11 25568054 25568227 -123215245 - MER52A LTR ERV1 0 1755 1592 318 319 90 11 chr11 25568300 25568488 -123214984 - MER52A LTR ERV1 -346 1409 1207 863 226 38 74 chr11 25568621 25569057 -123214415 - MER52A LTR ERV1 -143 898 284 9447 56 15 2 chr11 25569412 25570661 -123212811 - L1P LINE L1 -2311 3835 2571 * 10725 50 3 0 chr11 25570660 25572743 -123210729 + L1PA5 LINE L1 4057 6146 -8 242 280 27 13 chr11 25573057 25573132 -123210340 + MIR SINE MIR 65 140 -122 216 172 0 0 chr11 25573290 25573348 -123210124 + T-rich Low_complexity Low_complexity 1 58 0 2265 88 0 3 chr11 25574036 25574331 -123209141 + AluSg1 SINE Alu 1 294 -15 1966 125 21 6 chr11 25574512 25574840 -123208632 - L1MA3 LINE L1 0 6305 5973 1268 155 25 11 chr11 25574841 25575089 -123208383 + L1MA3 LINE L1 5744 5981 -319 2783 84 41 5 chr11 25575398 25575815 -123207657 + L1MA1 LINE L1 5861 6292 -10 2105 125 3 0 chr11 25575902 25576199 -123207273 + AluSx SINE Alu 1 298 -14 410 311 101 28 chr11 25576611 25577258 -123206214 - L1ME3A LINE L1 -220 5950 5257 359 65 74 19 chr11 25577329 25577437 -123206035 + (TA)n Simple_repeat Simple_repeat 1 114 0 2149 116 3 0 chr11 25577437 25577729 -123205743 - AluSg SINE Alu -15 295 3 381 278 16 21 chr11 25578119 25578313 -123205159 - L1ME3A LINE L1 -3113 3033 2841 1221 253 33 45 chr11 25578356 25578752 -123204720 + MLT1D LTR MaLR 113 503 -2 267 271 0 14 chr11 25578784 25578854 -123204618 + MIR SINE MIR 86 154 -108 8066 234 37 69 chr11 25579850 25585451 -123198021 - L1PA16 LINE L1 -11 7593 2182 261 339 44 56 chr11 25585749 25586177 -123197295 - L1PA16 LINE L1 -6173 1401 979 31 26 0 0 chr11 25586179 25586217 -123197255 + AT_rich Low_complexity Low_complexity 1 38 0 180 0 0 0 chr11 25586761 25586781 -123196691 + (T)n Simple_repeat Simple_repeat 1 20 0 209 362 59 20 chr11 25586919 25587071 -123196401 + MIR SINE MIR 20 177 -85 1634 142 72 48 chr11 25587552 25587883 -123195589 - MER44D DNA MER2_type 0 609 1 2007 149 37 0 chr11 25588168 25588491 -123194981 + MER1B DNA MER1_type 1 335 -2 925 236 161 41 chr11 25588960 25589286 -123194186 - MLT1D LTR MaLR 0 505 119 802 271 83 20 chr11 25589286 25589636 -123193836 + MLT1A2 LTR MaLR 3 374 0 925 236 161 41 chr11 25589636 25589720 -123193752 - MLT1D LTR MaLR -386 119 46 214 131 0 66 chr11 25590185 25590307 -123193165 + (TA)n Simple_repeat Simple_repeat 1 114 0 326 284 23 0 chr11 25590361 25590449 -123193023 + L1MC4 LINE L1 6614 6703 -1339 5075 34 2 5 chr11 25590781 25591400 -123192072 + L1PA4 LINE L1 5539 6155 0 22 56 0 0 chr11 25592940 25592976 -123190496 + AT_rich Low_complexity Low_complexity 1 36 0 366 146 0 0 chr11 25593503 25593585 -123189887 + (T)n Simple_repeat Simple_repeat 1 82 0 983 251 36 4 chr11 25594037 25594288 -123189184 - AluJo SINE Alu -53 259 1 256 62 21 21 chr11 25594981 25595029 -123188443 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 207 0 0 0 chr11 25595621 25595644 -123187828 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 30 0 0 0 chr11 25595987 25596017 -123187455 + AT_rich Low_complexity Low_complexity 1 30 0 2487 55 0 10 chr11 25596469 25596781 -123186691 - AluY SINE Alu -2 309 1 1118 57 0 0 chr11 25597375 25597515 -123185957 + AluY SINE Alu 163 302 -9 434 307 12 54 chr11 25598465 25598631 -123184841 + MER5B DNA MER1_type 1 159 -19 181 256 0 0 chr11 25598662 25598705 -123184767 + MER5B DNA MER1_type 25 67 -111 421 227 84 40 chr11 25599561 25599793 -123183679 - L1MB7 LINE L1 -1 6183 5951 875 247 32 4 chr11 25599795 25600046 -123183426 - L1MB7 LINE L1 -342 5824 5567 940 262 80 34 chr11 25600077 25600463 -123183009 - L1MCa LINE L1 -6005 421 18 1463 230 142 64 chr11 25600468 25600887 -123182585 - L1MB7 LINE L1 -963 5183 4798 352 62 0 125 chr11 25600887 25600967 -123182505 - L1MA2 LINE L1 0 6304 6235 1463 230 142 64 chr11 25600967 25601168 -123182304 - L1MB7 LINE L1 -1348 4798 4614 2363 87 0 0 chr11 25601168 25601477 -123181995 - AluSc SINE Alu 0 309 1 1463 230 142 64 chr11 25601477 25601671 -123181801 - L1MB7 LINE L1 -1532 4614 4304 191 369 49 49 chr11 25601674 25601899 -123181573 + L3 LINE CR1 905 1129 -448 270 355 64 6 chr11 25601966 25602138 -123181334 + MIR SINE MIR 66 247 -15 260 321 0 47 chr11 25602294 25602400 -123181072 + L3 LINE CR1 1282 1382 -195 1078 105 21 26 chr11 25602564 25602755 -123180717 + AluSc SINE Alu 59 248 -61 24 32 0 0 chr11 25602795 25602826 -123180646 + AT_rich Low_complexity Low_complexity 1 31 0 204 238 0 0 chr11 25604351 25604393 -123179079 - MIR SINE MIR -81 127 86 360 319 47 61 chr11 25605643 25605837 -123177635 - MIR SINE MIR -6 256 64 1775 200 22 8 chr11 25605837 25606197 -123177275 - MLT1A1 LTR MaLR 0 365 1 360 319 47 61 chr11 25606197 25606215 -123177257 - MIR SINE MIR -198 64 47 259 256 0 35 chr11 25606464 25606550 -123176922 + CT-rich Low_complexity Low_complexity 1 83 0 194 328 79 34 chr11 25606705 25606853 -123176619 - MIR SINE MIR -53 155 1 197 223 10 48 chr11 25607788 25607891 -123175581 + GA-rich Low_complexity Low_complexity 4 102 0 1716 187 6 16 chr11 25607990 25608305 -123175167 + AluJb SINE Alu 1 312 0 1093 214 0 0 chr11 25608841 25609047 -123174425 - MER2 DNA MER2_type -139 206 1 230 262 127 40 chr11 25609463 25609589 -123173883 - MIR SINE MIR -13 249 113 223 250 162 34 chr11 25610380 25610528 -123172944 - L3 LINE CR1 -159 1418 1252 222 359 11 0 chr11 25610869 25610961 -123172511 + L2 LINE L2 3170 3262 -10 325 299 94 0 chr11 25611095 25611222 -123172250 - MIR SINE MIR -49 213 75 2355 96 14 0 chr11 25612869 25613225 -123170247 - L1PA7 LINE L1 -790 5356 4996 5832 70 14 8 chr11 25613225 25614020 -123169452 + L1PA7 LINE L1 5354 6154 0 22 35 0 0 chr11 25614862 25614891 -123168581 + AT_rich Low_complexity Low_complexity 1 29 0 243 343 90 18 chr11 25614915 25615132 -123168340 + MIR SINE MIR 20 255 -7 566 218 269 35 chr11 25616093 25616290 -123167182 - MLT1E1 LTR MaLR -405 249 7 425 19 19 0 chr11 25616450 25616504 -123166968 + (TG)n Simple_repeat Simple_repeat 2 56 0 939 58 0 0 chr11 25616972 25617093 -123166379 + L1PA4 LINE L1 6032 6152 -3 1507 76 0 0 chr11 25617319 25617516 -123165956 + L1PA5 LINE L1 5955 6151 -3 31 26 0 0 chr11 25617516 25617554 -123165918 + AT_rich Low_complexity Low_complexity 1 38 0 386 346 23 8 chr11 25617729 25617859 -123165613 - MIR SINE MIR -108 154 23 498 283 58 31 chr11 25617899 25618090 -123165382 + L2 LINE L2 3116 3311 -2 683 258 51 36 chr11 25618597 25618872 -123164600 - LTR4 LTR ERV1 0 596 318 506 255 15 60 chr11 25619064 25619264 -123164208 - LTR4 LTR ERV1 -396 200 10 342 360 104 9 chr11 25619539 25619750 -123163722 - MIR SINE MIR -20 242 12 23 33 0 0 chr11 25621120 25621150 -123162322 + AT_rich Low_complexity Low_complexity 1 30 0 35 24 0 0 chr11 25621667 25621709 -123161763 + AT_rich Low_complexity Low_complexity 1 42 0 1543 158 0 99 chr11 25621709 25622032 -123161440 - AluJb SINE Alu -21 291 1 649 194 13 0 chr11 25622216 25622371 -123161101 + GA-rich Low_complexity Low_complexity 3 159 0 189 94 0 0 chr11 25622421 25622453 -123161019 + (T)n Simple_repeat Simple_repeat 1 32 0 2217 72 11 0 chr11 25623147 25623483 -123159989 - AluY SINE Alu 0 339 1 333 248 104 24 chr11 25625796 25625921 -123157551 + Tigger5 DNA MER2_type 1 135 -2188 1013 179 18 28 chr11 25625922 25626140 -123157332 + Tigger5 DNA MER2_type 2105 2320 -3 2302 88 3 13 chr11 25626717 25627024 -123156448 - AluSq SINE Alu -9 304 1 295 279 77 0 chr11 25628515 25628558 -123154914 + L2 LINE L2 3201 3239 -74 484 145 30 46 chr11 25628558 25628689 -123154783 - L1MA7 LINE L1 0 6291 6163 295 279 77 0 chr11 25628689 25628749 -123154723 + L2 LINE L2 3239 3312 -1 183 129 0 0 chr11 25628879 25628910 -123154562 + (T)n Simple_repeat Simple_repeat 1 31 0 2258 60 3 3 chr11 25629237 25629550 -123153922 - AluY SINE Alu 0 313 1 247 289 36 12 chr11 25629737 25629820 -123153652 - L2 LINE L2 0 3313 3229 * 465 324 46 33 chr11 25629818 25630059 -123153413 - MIR SINE MIR -6 256 13 29 47 0 0 chr11 25630134 25630177 -123153295 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr11 25632278 25632306 -123151166 + AT_rich Low_complexity Low_complexity 1 28 0 343 319 96 26 chr11 25632865 25633094 -123150378 + MIR SINE MIR 15 259 -3 273 29 0 0 chr11 25633187 25633221 -123150251 + (TG)n Simple_repeat Simple_repeat 1 34 0 996 293 51 32 chr11 25634263 25634781 -123148691 + L2 LINE L2 2608 3138 -175 317 96 0 19 chr11 25635539 25635591 -123147881 - MADE1 DNA Mariner -29 51 1 184 303 182 0 chr11 25636162 25636261 -123147211 + L2 LINE L2 2701 2817 -497 1610 301 65 18 chr11 25636290 25636613 -123146859 + L1M4 LINE L1 3553 3859 -2287 2568 36 3 7 chr11 25636613 25636920 -123146552 + AluY SINE Alu 1 306 -5 1610 301 65 18 chr11 25636920 25637583 -123145889 + L1M4 LINE L1 3859 4585 -1561 210 133 67 17 chr11 25638200 25638260 -123145212 + (TTATA)n Simple_repeat Simple_repeat 1 63 0 284 313 24 0 chr11 25638289 25638372 -123145100 - MIR SINE MIR -144 118 34 22 80 0 0 chr11 25638449 25638499 -123144973 + AT_rich Low_complexity Low_complexity 1 50 0 181 303 15 15 chr11 25639515 25639581 -123143891 - MIR SINE MIR -82 180 115 647 295 124 5 chr11 25639589 25639806 -123143666 + MER92C LTR ERV1 1 243 -311 440 267 55 24 chr11 25639857 25640022 -123143450 + MER92C LTR ERV1 383 552 -2 180 0 0 0 chr11 25640537 25640557 -123142915 + (A)n Simple_repeat Simple_repeat 1 20 0 1193 161 274 9 chr11 25640557 25640874 -123142598 - MSTA LTR MaLR -27 401 1 2080 153 11 19 chr11 25640985 25641363 -123142109 + THE1C LTR MaLR 1 375 0 23 33 0 0 chr11 25642236 25642266 -123141206 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr11 25642420 25642454 -123141018 + AT_rich Low_complexity Low_complexity 1 34 0 411 318 42 21 chr11 25642982 25643171 -123140301 - L2 LINE L2 -440 2874 2682 193 119 48 0 chr11 25643345 25643387 -123140085 + (TA)n Simple_repeat Simple_repeat 2 45 0 1472 198 27 34 chr11 25643591 25643889 -123139583 - AluJo SINE Alu -16 296 1 597 163 0 0 chr11 25644076 25644168 -123139304 + MLT1A1 LTR MaLR 2 93 -272 288 0 0 0 chr11 25644205 25644237 -123139235 + (TG)n Simple_repeat Simple_repeat 2 33 0 27 81 0 0 chr11 25645579 25645641 -123137831 + AT_rich Low_complexity Low_complexity 1 62 0 1280 94 133 0 chr11 25645966 25646169 -123137303 - MER30 DNA MER1_type 0 230 1 300 320 111 57 chr11 25646170 25646414 -123137058 - L1MC/D LINE L1 -2065 5743 5487 21 71 0 0 chr11 25646461 25646503 -123136969 + AT_rich Low_complexity Low_complexity 1 42 0 1306 194 76 0 chr11 25646816 25647079 -123136393 + AluJo SINE Alu 5 287 -25 30 0 0 0 chr11 25647079 25647109 -123136363 + AT_rich Low_complexity Low_complexity 1 30 0 713 185 8 0 chr11 25647111 25647241 -123136231 + FLAM_C SINE Alu 1 131 -2 23 33 0 0 chr11 25647732 25647762 -123135710 + AT_rich Low_complexity Low_complexity 1 30 0 2908 190 47 72 chr11 25647911 25648949 -123134523 - L1MB8 LINE L1 -1 6177 5149 384 261 39 13 chr11 25648949 25649102 -123134370 - L1MB8 LINE L1 -3798 2348 2192 1097 191 53 114 chr11 25649128 25649489 -123133983 + MLT1A1 LTR MaLR 19 357 -8 718 307 59 32 chr11 25649496 25650271 -123133201 - L1MEc LINE L1 -4121 2275 1480 1845 177 122 8 chr11 25650363 25650747 -123132725 - MSTA LTR MaLR 0 428 1 7938 199 21 12 chr11 25650747 25652383 -123131089 - MSTA-int LTR MaLR 0 1651 1 1678 154 171 14 chr11 25652390 25652740 -123130732 - MSTA LTR MaLR -14 414 10 324 297 67 41 chr11 25652744 25653110 -123130362 - L1MEc LINE L1 -5016 1380 953 522 189 11 0 chr11 25654011 25654101 -123129371 + AluJ/FLAM SINE Alu 1 91 -221 294 328 38 8 chr11 25654366 25654497 -123128975 + L2 LINE L2 3167 3301 -12 257 297 69 10 chr11 25654935 25655036 -123128436 + MIR3 SINE MIR 93 199 -9 1097 157 35 5 chr11 25655222 25655419 -123128053 - L1PA16 LINE L1 0 6166 5964 5354 202 19 28 chr11 25655420 25657341 -123126131 - L1PA16 LINE L1 -330 5836 3934 24 0 0 0 chr11 25657351 25657375 -123126097 + AT_rich Low_complexity Low_complexity 1 24 0 3023 247 102 61 chr11 25658196 25658904 -123124568 - L1MC4a LINE L1 0 7808 7131 200 35 35 0 chr11 25658904 25658933 -123124539 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 3023 247 102 61 chr11 25658933 25659243 -123124229 - L1MC4a LINE L1 -677 7131 6835 2829 16 0 0 chr11 25659243 25659561 -123123911 + AluYb8 SINE Alu 1 318 0 3023 247 102 61 chr11 25659561 25659988 -123123484 - L1MC4a LINE L1 -973 6835 6302 2497 48 0 3 chr11 25661065 25661377 -123122095 + AluY SINE Alu 1 311 0 333 100 0 0 chr11 25661963 25662013 -123121459 + (TG)n Simple_repeat Simple_repeat 1 50 0 394 240 136 45 chr11 25662861 25663015 -123120457 + MIR SINE MIR 20 187 -75 348 293 62 16 chr11 25663790 25663922 -123119550 + MIR3 SINE MIR 25 165 -43 317 322 55 33 chr11 25664682 25664865 -123118607 + MIR SINE MIR 10 196 -66 2937 300 67 20 chr11 25666117 25667275 -123116197 - ERVL LTR ERVL -2232 3532 2320 1527 311 104 45 chr11 25667316 25668176 -123115296 - ERVL LTR ERVL -3469 2224 1267 1872 133 61 19 chr11 25668176 25668536 -123114936 - THE1C LTR MaLR 0 375 1 1527 311 104 45 chr11 25668536 25668585 -123114887 - ERVL LTR ERVL -4426 1267 1222 423 325 89 0 chr11 25668589 25668780 -123114692 + MER3 DNA MER1_type 2 209 0 1685 294 47 26 chr11 25669094 25669709 -123113763 - MLT2E LTR ERVL 0 628 1 435 349 92 4 chr11 25670682 25670911 -123112561 + MIR SINE MIR 14 262 0 225 239 310 21 chr11 25671988 25672130 -123111342 - MIR3 SINE MIR -3 205 23 246 128 0 0 chr11 25672368 25672407 -123111065 + (T)n Simple_repeat Simple_repeat 1 39 0 847 226 58 0 chr11 25672418 25672608 -123110864 - MLT1B LTR MaLR -176 214 14 371 292 0 0 chr11 25672617 25672706 -123110766 - MLT1J LTR MaLR -292 219 131 3019 42 3 9 chr11 25673466 25673856 -123109616 + L1PA7 LINE L1 5766 6151 -3 28 29 0 0 chr11 25673928 25673963 -123109509 + AT_rich Low_complexity Low_complexity 1 35 0 31 44 0 0 chr11 25674009 25674054 -123109418 + AT_rich Low_complexity Low_complexity 1 45 0 25 31 0 0 chr11 25674241 25674273 -123109199 + AT_rich Low_complexity Low_complexity 1 32 0 294 106 0 0 chr11 25674278 25674325 -123109147 + (T)n Simple_repeat Simple_repeat 1 47 0 4545 201 38 9 chr11 25674334 25675464 -123108008 - L1MC1 LINE L1 -178 6435 5255 387 0 0 0 chr11 25675464 25675507 -123107965 + (TG)n Simple_repeat Simple_repeat 2 44 0 4545 201 38 9 chr11 25675507 25675847 -123107625 - L1MC1 LINE L1 -1358 5255 4926 3008 251 35 48 chr11 25675874 25676847 -123106625 - L1MC1 LINE L1 -2338 4088 3130 2094 64 37 3 chr11 25676847 25677145 -123106327 - L1PA10 LINE L1 -3 6165 5858 3008 251 35 48 chr11 25677145 25677273 -123106199 - L1MC1 LINE L1 -3296 3130 3002 * 6656 242 47 47 chr11 25677271 25679903 -123103569 - L1MB2 LINE L1 -163 6008 3377 2222 105 0 3 chr11 25679903 25680208 -123103264 - AluSx SINE Alu 0 312 9 6656 242 47 47 chr11 25680208 25680960 -123102512 - L1MB2 LINE L1 -2794 3377 2627 674 180 29 100 chr11 25680948 25681187 -123102285 - L1MC1 LINE L1 -5316 1110 889 * 2178 165 8 3 chr11 25681188 25681545 -123101927 + THE1B LTR MaLR 6 364 0 1600 123 8 0 chr11 25681545 25681796 -123101676 + THE1B-int LTR MaLR 1 253 -1327 1318 253 115 10 chr11 25681798 25682197 -123101275 - L1MC1 LINE L1 -5945 481 41 180 111 0 0 chr11 25682864 25682891 -123100581 + (TG)n Simple_repeat Simple_repeat 2 28 0 245 222 0 22 chr11 25683016 25683106 -123100366 + (TATG)n Simple_repeat Simple_repeat 3 90 0 1513 185 105 3 chr11 25683120 25683434 -123100038 - MER7A DNA MER2_type 0 346 3 304 372 67 12 chr11 25685073 25685138 -123098334 + MER5A DNA MER1_type 10 70 -119 1961 125 34 3 chr11 25685138 25685266 -123098206 + AluSx SINE Alu 1 124 -188 378 0 0 0 chr11 25685266 25685308 -123098164 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 1961 125 34 3 chr11 25685308 25685474 -123097998 + AluSx SINE Alu 124 304 -8 304 372 67 12 chr11 25685474 25685572 -123097900 + MER5A DNA MER1_type 70 182 -7 432 344 147 36 chr11 25685583 25686051 -123097421 - L3 LINE CR1 -83 1494 975 31 76 0 0 chr11 25687165 25687231 -123096241 + AT_rich Low_complexity Low_complexity 1 66 0 37161 35 24 1 chr11 25687231 25692650 -123090822 - L1PA3 LINE L1 -4 6151 606 208 261 45 23 chr11 25692902 25692990 -123090482 + L2 LINE L2 3183 3272 0 686 185 14 11 chr11 25694005 25694291 -123089181 + GA-rich Low_complexity Low_complexity 1 287 0 344 331 124 0 chr11 25695040 25695185 -123088287 + MER5A DNA MER1_type 26 188 -1 194 344 11 43 chr11 25696061 25696154 -123087318 + MIR SINE MIR 51 140 -122 547 176 35 99 chr11 25696518 25696660 -123086812 + LTR8A LTR ERV1 595 727 0 573 328 21 16 chr11 25696660 25696852 -123086620 + HUERS-P1 LTR ERV1 1 193 -6070 715 168 54 18 chr11 25696853 25697020 -123086452 - L1M3 LINE L1 -686 5482 5310 846 227 0 0 chr11 25697020 25697196 -123086276 - L1M3 LINE L1 -1123 5023 4848 908 346 29 48 chr11 25697197 25697555 -123085917 - L1M3d LINE L1 -5380 511 165 1636 175 0 55 chr11 25697555 25697881 -123085591 - AluJb SINE Alu -4 308 1 908 346 29 48 chr11 25697881 25698042 -123085430 - L1M3d LINE L1 -5726 165 2 27 49 0 0 chr11 25698087 25698128 -123085344 + AT_rich Low_complexity Low_complexity 1 41 0 29 47 0 0 chr11 25698251 25698294 -123085178 + AT_rich Low_complexity Low_complexity 1 43 0 4496 196 21 2 chr11 25698487 25699383 -123084089 - L1MA4A LINE L1 -4 6299 5387 5965 150 30 23 chr11 25700177 25700354 -123083118 - L1MA2 LINE L1 0 7723 7549 5221 128 18 0 chr11 25700354 25701453 -123082019 - L1PA10 LINE L1 -2 6166 5055 5965 150 30 23 chr11 25701453 25703194 -123080278 - L1MA2 LINE L1 -174 7549 5791 17605 179 33 42 chr11 25703218 25706690 -123076782 - L1MA2 LINE L1 -3695 3870 368 271 0 25 25 chr11 25706690 25706730 -123076742 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 17605 179 33 42 chr11 25706730 25706873 -123076599 - L1MA2 LINE L1 -7197 368 225 430 103 0 0 chr11 25706873 25706941 -123076531 - MER41B LTR ERV1 -87 548 481 17605 179 33 42 chr11 25706941 25707141 -123076331 - L1MA2 LINE L1 -7340 225 17 2044 113 3 0 chr11 25707153 25707470 -123076002 - AluY SINE Alu 0 318 1 192 40 0 0 chr11 25708896 25708921 -123074551 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 1516 175 11 28 chr11 25708922 25709208 -123074264 - AluJo SINE Alu -31 281 1 252 291 62 88 chr11 25709580 25709788 -123073684 + MIR SINE MIR 22 214 -48 189 275 0 0 chr11 25709794 25709834 -123073638 - MIR SINE MIR -72 190 151 255 267 47 0 chr11 25709841 25709927 -123073545 - L1MA4A LINE L1 -23 6280 6191 4196 182 23 23 chr11 25709932 25709974 -123073498 - L1MA4A LINE L1 -181 6122 6082 2863 97 68 0 chr11 25709974 25710398 -123073074 - MLT2A2 LTR ERVL 0 453 1 4196 182 23 23 chr11 25710398 25711782 -123071690 - L1MA4A LINE L1 -221 6082 4696 1475 173 26 29 chr11 25711819 25712125 -123071347 - L1PA15 LINE L1 -3 6162 5858 2402 126 70 7 chr11 25712152 25712566 -123070906 - L1PA14 LINE L1 -250 5911 5472 6469 48 0 1 chr11 25712678 25713488 -123069984 - L1PA14 LINE L1 -853 5293 4485 4510 238 101 86 chr11 25713527 25715922 -123067550 - L1PA15-16 LINE L1 -964 5885 3529 326 98 0 16 chr11 25715922 25715983 -123067489 + (TA)n Simple_repeat Simple_repeat 2 61 0 4510 238 101 86 chr11 25715983 25716545 -123066927 - L1PA15-16 LINE L1 -3320 3529 2977 207 0 0 0 chr11 25716545 25716568 -123066904 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 4510 238 101 86 chr11 25716568 25717428 -123066044 - L1PA15-16 LINE L1 -3872 2977 2136 1948 142 33 0 chr11 25717428 25717731 -123065741 - AluSq SINE Alu 0 313 1 4510 238 101 86 chr11 25717731 25717828 -123065644 - L1PA15-16 LINE L1 -4713 2136 2042 1032 93 20 0 chr11 25717829 25717979 -123065493 - MER75 DNA T2_type -1 503 351 1860 152 17 0 chr11 25717983 25718279 -123065193 - AluSx SINE Alu -7 305 5 1140 249 9 0 chr11 25718286 25718612 -123064860 - L1M2 LINE L1 -4943 1906 1578 1414 145 29 13 chr11 25718622 25718878 -123064594 - L1PA10 LINE L1 0 6163 5897 799 53 0 18 chr11 25718876 25718990 -123064482 + L1P LINE L1 5254 5365 -766 * 3202 318 11 58 chr11 25718971 25720374 -123063098 - L1M2 LINE L1 -5249 1600 264 529 278 60 0 chr11 25720387 25720538 -123062934 - MIR SINE MIR -99 163 4 33 25 0 0 chr11 25720831 25720871 -123062601 + AT_rich Low_complexity Low_complexity 1 40 0 254 308 67 33 chr11 25722004 25722124 -123061348 + LTR16A LTR ERVL 94 217 -233 755 321 91 45 chr11 25722277 25722850 -123060622 + HERVL LTR ERVL 109 707 -4289 599 308 66 0 chr11 25722998 25723209 -123060263 + HERVL LTR ERVL 901 1125 -3871 1006 303 85 93 chr11 25723283 25724309 -123059163 + HERVL LTR ERVL 1219 2236 -2760 1568 349 45 29 chr11 25724942 25726036 -123057436 + HERVL LTR ERVL 3724 4834 -820 402 359 58 22 chr11 25726602 25726914 -123056558 + LTR16A LTR ERVL 21 343 -107 4126 180 46 58 chr11 25727069 25728368 -123055104 - L1MA4 LINE L1 -6 6294 5007 286 321 60 11 chr11 25728502 25728686 -123054786 - MER76 LTR ERV -33 655 463 7948 208 11 21 chr11 25729433 25731290 -123052182 - L1 LINE L1 -836 5310 3472 321 115 0 0 chr11 25731734 25731786 -123051686 - L1M LINE L1 -941 5364 5313 956 139 23 0 chr11 25731786 25731959 -123051513 + L1MA1 LINE L1 6006 6182 -120 338 136 0 0 chr11 25731961 25732020 -123051452 + L1MA2 LINE L1 6246 6304 0 22 0 0 0 chr11 25733509 25733531 -123049941 + AT_rich Low_complexity Low_complexity 1 22 0 1125 173 13 4 chr11 25735019 25735244 -123048228 + L1MA4 LINE L1 5644 5870 -430 477 334 46 84 chr11 25735270 25735617 -123047855 - L2 LINE L2 -10 3262 2929 246 32 0 0 chr11 25735700 25735731 -123047741 + (TA)n Simple_repeat Simple_repeat 1 31 0 512 289 89 67 chr11 25735871 25736377 -123047095 - LTR33 LTR ERVL 0 521 5 23 54 0 0 chr11 25737427 25737464 -123046008 + AT_rich Low_complexity Low_complexity 1 37 0 198 0 0 0 chr11 25738848 25738870 -123044602 + (TG)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr11 25738885 25738906 -123044566 + AT_rich Low_complexity Low_complexity 1 21 0 1410 185 70 0 chr11 25738917 25739160 -123044312 - AluSg SINE Alu -45 265 6 448 315 60 37 chr11 25739614 25740176 -123043296 - L1MEc LINE L1 -4576 1820 1246 540 199 44 72 chr11 25740282 25740483 -123042989 + L1MA8 LINE L1 6110 6312 0 216 182 23 0 chr11 25741210 25741254 -123042218 - L2 LINE L2 -4 3309 3265 295 315 134 35 chr11 25742473 25742705 -123040767 + MLT1L LTR MaLR 189 443 -172 7391 70 7 0 chr11 25742955 25744322 -123039150 - L1P2 LINE L1 -394 5760 4383 2512 153 44 12 chr11 25745023 25745526 -123037946 - L1MA4 LINE L1 0 6300 5782 311 179 9 0 chr11 25745526 25745632 -123037840 + (TA)n Simple_repeat Simple_repeat 1 107 0 2500 188 20 44 chr11 25745632 25746428 -123037044 - L1MA4 LINE L1 -508 5792 5006 395 323 59 5 chr11 25746556 25746742 -123036730 - MER76 LTR ERV -30 658 463 260 256 13 13 chr11 25747162 25747240 -123036232 - HERVL40 LTR ERVL -2249 3281 3204 189 0 0 0 chr11 25747981 25748002 -123035470 + (TG)n Simple_repeat Simple_repeat 1 21 0 558 280 0 0 chr11 25749499 25749617 -123033855 - FLAM_A SINE Alu -14 119 2 1042 277 87 25 chr11 25750259 25750663 -123032809 - L2 LINE L2 -1871 1443 1015 191 176 118 78 chr11 25750948 25750999 -123032473 + L2 LINE L2 3246 3298 -15 45 55 0 0 chr11 25751972 25752045 -123031427 + AT_rich Low_complexity Low_complexity 1 73 0 6636 114 31 15 chr11 25752381 25753435 -123030037 - MER11C LTR ERVK 0 1071 1 233 228 8 114 chr11 25753485 25753608 -123029864 - MIR SINE MIR -49 213 104 358 331 8 0 chr11 25753782 25753909 -123029563 - MIR SINE MIR -11 251 124 24 0 0 0 chr11 25754305 25754329 -123029143 + AT_rich Low_complexity Low_complexity 1 24 0 377 289 142 19 chr11 25754617 25754828 -123028644 + L2 LINE L2 2527 2763 -551 330 280 77 49 chr11 25755041 25755184 -123028288 - L1ME LINE L1 -5653 417 271 275 181 24 24 chr11 25755756 25755839 -123027633 - L1PA16 LINE L1 0 6166 6084 1520 121 23 19 chr11 25755939 25756196 -123027276 - L1PA16 LINE L1 -325 5841 5584 204 200 0 0 chr11 25756371 25756406 -123027066 + polypyrimidine Low_complexity Low_complexity 1 35 0 232 295 0 0 chr11 25757169 25757230 -123026242 + MER5A DNA MER1_type 129 189 0 230 217 0 0 chr11 25757278 25757324 -123026148 + L2 LINE L2 3268 3313 0 202 367 31 10 chr11 25758949 25759047 -123024425 - MIR3 SINE MIR -45 163 64 885 272 75 70 chr11 25759048 25759460 -123024012 + MLT2B1 LTR ERVL 3 416 -48 200 182 0 36 chr11 25759481 25759536 -123023936 + (CATA)n Simple_repeat Simple_repeat 4 56 0 1516 189 0 82 chr11 25759772 25760137 -123023335 - MER7A DNA MER2_type -13 333 1 294 330 10 0 chr11 25760154 25760254 -123023218 + MER5A DNA MER1_type 9 109 -80 2205 152 11 3 chr11 25760915 25761276 -123022196 + THE1B LTR MaLR 1 364 0 1227 325 41 20 chr11 25761496 25761989 -123021483 + L1M3d LINE L1 8 510 -5381 * 2521 277 95 33 chr11 25761958 25763292 -123020180 + L1 LINE L1 255 1373 -4518 1906 256 10 4 chr11 25763304 25763796 -123019676 + L1 LINE L1 3429 3923 -2047 453 296 107 33 chr11 25763815 25764058 -123019414 + L2 LINE L2 3019 3279 -34 32 43 0 0 chr11 25764493 25764539 -123018933 + AT_rich Low_complexity Low_complexity 1 46 0 1590 248 8 86 chr11 25765330 25765475 -123017997 + MLT2B1 LTR ERVL 1 156 -364 2218 152 66 22 chr11 25765475 25765883 -123017589 - MSTA LTR MaLR 0 428 3 1590 248 8 86 chr11 25765883 25766258 -123017214 + MLT2B1 LTR ERVL 156 480 -40 1473 158 63 14 chr11 25766803 25767088 -123016384 - AluSc SINE Alu -1 308 10 762 283 61 24 chr11 25767959 25768206 -123015266 + MIR SINE MIR 7 262 0 25 0 0 0 chr11 25768334 25768359 -123015113 + AT_rich Low_complexity Low_complexity 1 25 0 205 325 121 0 chr11 25769504 25769587 -123013885 + L2 LINE L2 3206 3298 -15 315 212 0 0 chr11 25770297 25770382 -123013090 + (TA)n Simple_repeat Simple_repeat 2 86 0 332 229 0 62 chr11 25770384 25770480 -123012992 - L1MC4 LINE L1 -1339 6703 6614 198 174 0 0 chr11 25770488 25770534 -123012938 + (TA)n Simple_repeat Simple_repeat 2 47 0 332 229 0 62 chr11 25770540 25770636 -123012836 - L1MC4 LINE L1 -1339 6703 6614 327 171 0 0 chr11 25770642 25770718 -123012754 + (TA)n Simple_repeat Simple_repeat 2 77 0 338 300 0 0 chr11 25770720 25770810 -123012662 - L1MC4 LINE L1 -1339 6703 6614 486 197 0 0 chr11 25770815 25770952 -123012520 + (TA)n Simple_repeat Simple_repeat 2 138 0 474 170 0 0 chr11 25771664 25771758 -123011714 + G-rich Low_complexity Low_complexity 5 98 0 24 32 0 0 chr11 25772049 25772080 -123011392 + AT_rich Low_complexity Low_complexity 1 31 0 2059 110 14 0 chr11 25772161 25772453 -123011019 - AluSp SINE Alu -17 296 1 204 229 0 0 chr11 25772624 25772659 -123010813 - L2 LINE L2 -16 3297 3263 358 287 148 5 chr11 25773110 25773319 -123010153 - L1MEc LINE L1 -1395 4820 4582 9079 44 3 0 chr11 25773656 25775528 -123007944 + L1PA4 LINE L1 4272 6148 -7 32 0 0 0 chr11 25775528 25775560 -123007912 + AT_rich Low_complexity Low_complexity 1 32 0 1005 291 39 28 chr11 25775699 25776232 -123007240 - L1MEc LINE L1 -1817 4398 3860 1186 269 57 29 chr11 25776397 25777119 -123006353 - L1MEc LINE L1 -2840 3375 2634 1970 292 85 42 chr11 25777344 25778856 -123004616 - L1MEc LINE L1 -3639 2576 1000 1760 214 28 3 chr11 25778856 25779212 -123004260 - MLT1A1 LTR MaLR 0 365 1 1970 292 85 42 chr11 25779212 25779521 -123003951 - L1MEc LINE L1 -5215 1000 706 225 215 32 21 chr11 25780991 25781084 -123002388 + (TA)n Simple_repeat Simple_repeat 2 95 0 422 359 6 12 chr11 25781163 25781330 -123002142 - MIR SINE MIR -70 192 27 234 269 60 37 chr11 25781587 25781721 -123001751 + MIR SINE MIR 113 249 -13 377 351 0 8 chr11 25781933 25782067 -123001405 + MLT2E LTR ERVL 40 172 -456 495 0 0 0 chr11 25782120 25782175 -123001297 + (TA)n Simple_repeat Simple_repeat 2 56 0 1368 179 88 28 chr11 25782193 25782478 -123000994 + AluJo SINE Alu 1 302 -10 1136 102 11 0 chr11 25783219 25783396 -123000076 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 581 192 11 28 chr11 25783397 25783579 -122999893 + GA-rich Low_complexity Low_complexity 2 180 0 394 207 0 18 chr11 25783590 25783701 -122999771 + GA-rich Low_complexity Low_complexity 3 111 0 261 354 31 0 chr11 25784454 25784550 -122998922 + MER81 DNA DNA 16 114 0 1921 104 0 39 chr11 25784726 25785005 -122998467 - AluSx SINE Alu -44 268 1 28 48 0 0 chr11 25785092 25785134 -122998338 + AT_rich Low_complexity Low_complexity 1 42 0 232 271 73 10 chr11 25785553 25785649 -122997823 - L1ME LINE L1 -672 5449 5348 292 299 65 36 chr11 25786839 25786993 -122996479 + MIR SINE MIR 38 194 -67 197 323 152 0 chr11 25787227 25787326 -122996146 - MIR SINE MIR -60 148 35 23 33 0 0 chr11 25787907 25787937 -122995535 + AT_rich Low_complexity Low_complexity 1 30 0 1516 233 13 66 chr11 25788171 25788566 -122994906 + MLT1D LTR MaLR 130 503 -2 225 302 12 24 chr11 25788594 25788763 -122994709 + (TA)n Simple_repeat Simple_repeat 2 168 0 2158 152 17 8 chr11 25788887 25789248 -122994224 + THE1B LTR MaLR 1 364 0 3102 103 5 0 chr11 25789248 25789684 -122993788 + THE1B-int LTR MaLR 1 438 -1142 2085 164 27 15 chr11 25789677 25790502 -122992970 + L1PB4 LINE L1 4802 6147 -9 * 2085 188 40 2 chr11 25790502 25790932 -122992540 + L1PB4 LINE L1 5706 6151 -5 488 320 59 68 chr11 25791073 25791498 -122991974 + L2 LINE L2 2876 3296 -17 198 71 0 0 chr11 25792460 25792488 -122990984 + (TG)n Simple_repeat Simple_repeat 2 29 0 227 354 91 0 chr11 25793737 25793836 -122989636 + L2 LINE L2 3147 3254 -18 2245 173 25 0 chr11 25793979 25794383 -122989089 - L1PBa LINE L1 -5814 1049 636 1071 184 20 0 chr11 25794385 25794581 -122988891 - L1PBa LINE L1 -6663 200 1 266 147 0 40 chr11 25794619 25794694 -122988778 - L1 LINE L1 -2999 3147 3076 687 239 29 13 chr11 25794827 25795066 -122988406 - L1 LINE L1 -3123 3023 2781 626 94 10 0 chr11 25795067 25795163 -122988309 + L1PB2 LINE L1 6055 6151 0 1390 113 31 0 chr11 25795186 25795408 -122988064 - L1PA15-16 LINE L1 -4870 1979 1751 * 1496 168 0 0 chr11 25795406 25795632 -122987840 - L1PA15-16 LINE L1 -6621 228 3 1564 150 91 28 chr11 25796134 25796487 -122986985 + THE1C LTR MaLR 1 375 0 266 391 78 0 chr11 25796742 25796921 -122986551 + L2 LINE L2 2824 3016 -297 964 136 6 6 chr11 25797142 25797319 -122986153 + (TTCCC)n Simple_repeat Simple_repeat 4 180 0 273 297 55 31 chr11 25798498 25798626 -122984846 - MLT1I LTR MaLR -266 143 13 464 284 8 0 chr11 25798992 25799126 -122984346 + MLT1J LTR MaLR 78 212 -299 498 165 12 0 chr11 25799352 25799437 -122984035 + AluS SINE Alu 1 86 -226 185 196 18 0 chr11 25800255 25800311 -122983161 + (CATATA)n Simple_repeat Simple_repeat 6 62 0 185 353 191 7 chr11 25800317 25800453 -122983019 - MIR SINE MIR -68 194 34 429 350 39 10 chr11 25800714 25800920 -122982552 - MIR SINE MIR 0 262 51 221 261 65 33 chr11 25800904 25800996 -122982476 + MIR SINE MIR 93 187 -75 * 255 222 25 12 chr11 25801492 25801573 -122981899 + (TA)n Simple_repeat Simple_repeat 1 82 0 188 379 0 23 chr11 25801687 25801774 -122981698 + MIR SINE MIR 8 92 -170 32 101 0 0 chr11 25801920 25802029 -122981443 + AT_rich Low_complexity Low_complexity 1 109 0 23 54 0 0 chr11 25802278 25802315 -122981157 + AT_rich Low_complexity Low_complexity 1 37 0 636 338 39 25 chr11 25802646 25803001 -122980471 + L2 LINE L2 2447 2806 -508 181 368 78 17 chr11 25803069 25803300 -122980172 + L2 LINE L2 3032 3276 -37 287 360 54 22 chr11 25803337 25803559 -122979913 - MIR SINE MIR -31 231 3 198 0 0 0 chr11 25805511 25805533 -122977939 + (CA)n Simple_repeat Simple_repeat 2 23 0 * 438 36 0 0 chr11 25805532 25805588 -122977884 + (TC)n Simple_repeat Simple_repeat 2 57 0 196 203 31 94 chr11 25805976 25806040 -122977432 + L3 LINE CR1 1510 1569 -8 2776 170 7 37 chr11 25807553 25808146 -122975326 - L1MA6 LINE L1 0 6300 5726 21 0 0 0 chr11 25808209 25808230 -122975242 + AT_rich Low_complexity Low_complexity 1 21 0 297 89 0 0 chr11 25808414 25808459 -122975013 + (TG)n Simple_repeat Simple_repeat 2 46 0 218 276 0 0 chr11 25809342 25809397 -122974075 + MIR SINE MIR 97 145 -63 21 0 0 0 chr11 25809452 25809473 -122973999 + AT_rich Low_complexity Low_complexity 1 21 0 583 155 10 0 chr11 25809845 25809942 -122973530 - AluJ/FLAM SINE Alu -214 98 1 202 327 45 64 chr11 25810178 25810334 -122973138 - L2 LINE L2 -223 3049 2897 3332 137 0 8 chr11 25811132 25811644 -122971828 - MER9 LTR ERVK 0 511 4 462 100 7 93 chr11 25811876 25812016 -122971456 - MER9 LTR ERVK -383 128 1 606 89 0 0 chr11 25812993 25813083 -122970389 + (TC)n Simple_repeat Simple_repeat 1 90 0 388 296 120 9 chr11 25813529 25813762 -122969710 + MER110A LTR ERV1 28 286 -182 2248 249 30 2 chr11 25813762 25814305 -122969167 + MER90 LTR ERV1 10 567 -8 23 33 0 0 chr11 25814610 25814640 -122968832 + AT_rich Low_complexity Low_complexity 1 30 0 2254 81 0 3 chr11 25814714 25815010 -122968462 - AluY SINE Alu -16 295 1 390 333 61 17 chr11 25815025 25815256 -122968216 + L2 LINE L2 2736 2976 -338 23 0 0 0 chr11 25815408 25815431 -122968041 + AT_rich Low_complexity Low_complexity 1 23 0 2045 122 17 0 chr11 25815546 25815834 -122967638 + AluSx SINE Alu 1 293 -19 267 360 9 9 chr11 25816939 25817050 -122966422 + MIR3 SINE MIR 65 175 -33 22 0 0 0 chr11 25817114 25817136 -122966336 + AT_rich Low_complexity Low_complexity 1 22 0 435 270 71 16 chr11 25817374 25817500 -122965972 - L2 LINE L2 -1 3312 3180 280 291 27 54 chr11 25817521 25817669 -122965803 + MLT1I LTR MaLR 28 171 -238 228 132 26 53 chr11 25819372 25819448 -122964024 + T-rich Low_complexity Low_complexity 3 76 0 255 31 0 0 chr11 25819879 25819911 -122963561 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2051 133 0 10 chr11 25821606 25821906 -122961566 - AluSx SINE Alu -15 297 1 214 167 0 0 chr11 25822154 25822196 -122961276 + (CAT)n Simple_repeat Simple_repeat 1 42 0 243 0 0 0 chr11 25822258 25822285 -122961187 + (TA)n Simple_repeat Simple_repeat 1 27 0 5281 60 3 0 chr11 25822287 25822959 -122960513 - L1PA5 LINE L1 -6 6148 5475 34551 48 3 2 chr11 25822967 25829119 -122954353 - L1PA3 LINE L1 0 6155 1 1754 75 16 0 chr11 25829086 25829421 -122954051 - L1P2 LINE L1 -628 5526 5187 * 6278 73 22 0 chr11 25829421 25830285 -122953187 + L1P LINE L1 3158 4040 -2106 1597 199 17 3 chr11 25830541 25830838 -122952634 + AluJo SINE Alu 1 301 -11 12171 174 24 9 chr11 25830878 25833106 -122950366 - Tigger1 DNA MER2_type -3 2415 156 5791 217 40 25 chr11 25833246 25835714 -122947758 - L1 LINE L1 -3829 2499 1 22 35 0 0 chr11 25836176 25836205 -122947267 + AT_rich Low_complexity Low_complexity 1 29 0 213 243 186 0 chr11 25836585 25836655 -122946817 - MIR SINE MIR -67 195 113 683 312 34 15 chr11 25838010 25838279 -122945193 - LTR16B LTR ERVL 0 464 191 642 232 0 76 chr11 25838323 25838521 -122944951 + MLT1E2 LTR MaLR 1 183 -443 482 269 70 45 chr11 25838800 25839086 -122944386 + LTR52 LTR ERVL 1 293 -128 615 241 179 12 chr11 25839521 25839862 -122943610 - MER69 DNA AcHobo -113 2413 2016 661 321 154 31 chr11 25839870 25840230 -122943242 - MER69 DNA AcHobo -1961 565 130 1149 249 48 28 chr11 25840230 25840588 -122942884 + MLT1A1 LTR MaLR 1 365 0 661 321 154 31 chr11 25840588 25840707 -122942765 - MER69 DNA AcHobo -2396 130 27 1738 265 73 47 chr11 25841250 25842472 -122941000 - L1ME2 LINE L1 -106 6058 4668 * 10006 230 36 59 chr11 25842461 25843125 -122940347 + L1M2 LINE L1 85 763 -6085 1916 173 106 3 chr11 25843125 25843513 -122939959 + MSTA LTR MaLR 1 428 0 10006 230 36 59 chr11 25843513 25843673 -122939799 + L1M2 LINE L1 763 925 -5923 2279 91 0 10 chr11 25843673 25843980 -122939492 - AluSc SINE Alu -5 304 1 10006 230 36 59 chr11 25843980 25844007 -122939465 + L1M2 LINE L1 925 951 -5897 339 203 0 0 chr11 25844007 25844071 -122939401 + MSTA LTR MaLR 365 428 0 10006 230 36 59 chr11 25844071 25847626 -122935846 + L1M2 LINE L1 951 4449 -2399 7728 111 18 1 chr11 25847623 25848820 -122934652 - L1P LINE L1 -1918 4228 3011 * 6599 65 17 6 chr11 25848820 25850424 -122933048 + L1PA7 LINE L1 4539 6154 0 3264 160 34 184 chr11 25850432 25851405 -122932067 + L1M2 LINE L1 4477 5208 -1640 1322 229 10 17 chr11 25851405 25851702 -122931770 + AluJo SINE Alu 5 299 -13 3264 160 34 184 chr11 25851702 25852025 -122931447 + L1M2 LINE L1 5208 5578 -1270 1122 174 103 20 chr11 25852032 25852285 -122931187 + MSTA LTR MaLR 3 276 -152 * 2687 143 10 0 chr11 25852282 25852688 -122930784 + MSTA LTR MaLR 17 426 -2 1132 186 20 112 chr11 25852689 25853136 -122930336 + L1M2 LINE L1 5695 6100 -748 * 1754 187 42 21 chr11 25853133 25853652 -122929820 + L1MA4A LINE L1 5136 5664 -639 589 156 19 25 chr11 25853652 25853812 -122929660 + GA-rich Low_complexity Low_complexity 4 162 0 2857 178 23 22 chr11 25853822 25854467 -122929005 + L1MA4A LINE L1 5653 6298 -5 281 324 36 9 chr11 25854467 25854578 -122928894 - L2 LINE L2 -21 3292 3179 23 0 0 0 chr11 25854651 25854674 -122928798 + AT_rich Low_complexity Low_complexity 1 23 0 748 291 120 10 chr11 25854676 25855194 -122928278 - L1MEc LINE L1 -1455 5085 4511 1848 291 89 16 chr11 25855231 25856518 -122926954 - L1MEc LINE L1 -2105 4435 3054 539 306 49 24 chr11 25856558 25857009 -122926463 - L1MEc LINE L1 -3547 2993 2532 1405 213 35 23 chr11 25857011 25857248 -122926224 + MLT2C1 LTR ERVL 1 245 -152 2012 102 0 0 chr11 25857248 25857514 -122925958 + AluSg SINE Alu 39 304 -6 1405 213 35 23 chr11 25857514 25857619 -122925853 + MLT2C1 LTR ERVL 245 347 -50 418 298 120 58 chr11 25857715 25858165 -122925307 - L1MEc LINE L1 -4148 2573 2096 668 239 118 51 chr11 25858186 25858558 -122924914 - L1MEc LINE L1 -4695 1845 1449 1887 137 16 13 chr11 25859136 25859443 -122924029 - AluSq SINE Alu -5 308 1 23 33 0 0 chr11 25859448 25859478 -122923994 + AT_rich Low_complexity Low_complexity 1 30 0 589 253 141 12 chr11 25859488 25859737 -122923735 - LTR16A1 LTR ERVL -7 450 170 306 296 167 0 chr11 25861020 25861128 -122922344 + MIR SINE MIR 126 251 -11 606 385 31 8 chr11 25861731 25862115 -122921357 + MLT1K LTR MaLR 196 588 0 231 313 30 0 chr11 25862208 25862275 -122921197 - L2 LINE L2 -19 3294 3226 56 39 0 0 chr11 25862499 25862576 -122920896 + AT_rich Low_complexity Low_complexity 1 77 0 3952 159 25 6 chr11 25862713 25863443 -122920029 - L1MA4A LINE L1 -5 6298 5555 1022 193 7 93 chr11 25863452 25863721 -122919751 - L1M2 LINE L1 -6602 247 2 195 346 30 20 chr11 25863950 25864051 -122919421 - L2 LINE L2 -991 2323 2222 273 237 26 13 chr11 25864290 25864366 -122919106 - MIR SINE MIR -102 160 84 281 314 0 0 chr11 25864519 25864605 -122918867 - MER103 DNA DNA -77 89 4 1014 133 14 2 chr11 25864997 25865292 -122918180 + THE1C LTR MaLR 1 368 -7 9257 121 40 42 chr11 25865296 25866878 -122916594 + THE1C-int LTR MaLR 2 1580 0 2304 119 24 16 chr11 25866880 25867250 -122916222 + THE1C LTR MaLR 3 375 0 240 235 15 0 chr11 25867360 25867428 -122916044 + (TA)n Simple_repeat Simple_repeat 1 69 0 452 337 51 0 chr11 25867630 25867808 -122915664 - MIR SINE MIR -67 195 9 794 217 19 0 chr11 25868183 25868340 -122915132 + FAM SINE Alu 7 166 -19 30 0 0 0 chr11 25868892 25868922 -122914550 + AT_rich Low_complexity Low_complexity 1 30 0 1327 178 99 76 chr11 25869262 25869791 -122913681 + MER21B LTR ERV1 1 566 -297 1196 171 55 137 chr11 25869791 25870281 -122913191 - LTR7 LTR ERV1 0 450 1 3470 121 14 13 chr11 25870283 25870837 -122912635 - HERVH LTR ERV1 -2 7711 7157 * 13133 136 9 7 chr11 25870830 25873485 -122909987 - HERVH LTR ERV1 -1697 6016 3421 223 329 0 13 chr11 25873499 25873578 -122909894 - L2 LINE L2 -68 3245 3168 25 0 0 0 chr11 25873636 25873661 -122909811 + AT_rich Low_complexity Low_complexity 1 25 0 206 345 104 18 chr11 25874046 25874266 -122909206 + L2 LINE L2 2946 3184 -129 324 280 24 54 chr11 25874400 25874568 -122908904 + L2 LINE L2 3149 3311 -2 459 307 0 40 chr11 25874702 25874852 -122908620 + MIR SINE MIR 37 180 -82 1858 219 63 11 chr11 25875712 25875887 -122907585 + MLT1C LTR MaLR 1 165 -302 333 0 0 0 chr11 25875887 25875924 -122907548 + (CA)n Simple_repeat Simple_repeat 2 38 0 1858 219 63 11 chr11 25875924 25876190 -122907282 + MLT1C LTR MaLR 165 465 -2 186 43 0 0 chr11 25876479 25876502 -122906970 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 442 197 54 88 chr11 25876548 25876695 -122906777 + LTR56 LTR ERV1 1 142 -303 1837 154 18 0 chr11 25876767 25877052 -122906420 - AluSx SINE Alu -22 290 1 1127 190 86 55 chr11 25877066 25877392 -122906080 - MER4D LTR ERV1 0 903 568 22 35 0 0 chr11 25878381 25878410 -122905062 + AT_rich Low_complexity Low_complexity 1 29 0 1624 246 139 38 chr11 25878414 25879228 -122904244 - L1ME2 LINE L1 -12 6152 5257 235 297 0 0 chr11 25879256 25879320 -122904152 + (CATATA)n Simple_repeat Simple_repeat 6 69 0 1203 271 42 49 chr11 25879386 25880081 -122903391 - L1ME2 LINE L1 -1261 4885 4196 4504 181 31 23 chr11 25880482 25881423 -122902049 + L1MC1 LINE L1 5373 6320 -13 210 37 0 0 chr11 25881428 25881455 -122902017 + (TAA)n Simple_repeat Simple_repeat 2 28 0 268 254 51 136 chr11 25881998 25882175 -122901297 + MIR SINE MIR 17 178 -84 24 0 0 0 chr11 25882939 25882963 -122900509 + AT_rich Low_complexity Low_complexity 1 24 0 1820 32 0 0 chr11 25882963 25883184 -122900288 - L1PA5 LINE L1 -8 6146 5926 1605 22 0 0 chr11 25883184 25883369 -122900103 + L1PA5 LINE L1 5738 5922 -233 1760 169 26 0 chr11 25883369 25883641 -122899831 - AluJo SINE Alu -33 279 1 381 279 66 73 chr11 25883988 25884077 -122899395 + L2 LINE L2 3175 3264 -49 1846 141 7 42 chr11 25884077 25884383 -122899089 + AluSx SINE Alu 1 295 -17 381 279 66 73 chr11 25884383 25884429 -122899043 + L2 LINE L2 3264 3309 -4 223 297 29 94 chr11 25885226 25885364 -122898108 + L2 LINE L2 3140 3268 -4 200 224 0 35 chr11 25885623 25885681 -122897791 + CT-rich Low_complexity Low_complexity 1 56 0 2041 124 3 7 chr11 25885769 25886075 -122897397 + AluSg SINE Alu 1 305 -5 514 254 8 0 chr11 25886814 25886944 -122896528 - MER103 DNA DNA -2 164 34 1133 329 49 40 chr11 25887269 25887902 -122895570 + L2 LINE L2 2395 3030 -283 31 44 0 0 chr11 25887979 25888024 -122895448 + AT_rich Low_complexity Low_complexity 1 45 0 22 94 0 0 chr11 25888173 25888237 -122895235 + AT_rich Low_complexity Low_complexity 1 64 0 24 0 0 0 chr11 25888325 25888349 -122895123 + AT_rich Low_complexity Low_complexity 1 24 0 29 0 0 0 chr11 25888497 25888526 -122894946 + AT_rich Low_complexity Low_complexity 1 29 0 5171 162 18 20 chr11 25888639 25889815 -122893657 - L1PA15 LINE L1 -1 6164 5002 16738 39 0 0 chr11 25889915 25892732 -122890740 + L1PA3 LINE L1 3335 6151 -4 199 303 0 53 chr11 25892936 25893012 -122890460 - MIR3 SINE MIR -27 181 110 508 14 0 28 chr11 25893199 25893270 -122890202 + (TTATA)n Simple_repeat Simple_repeat 2 70 0 676 290 29 14 chr11 25894392 25894599 -122888873 + MIR SINE MIR 12 221 -41 213 154 0 0 chr11 25894697 25894736 -122888736 + (CA)n Simple_repeat Simple_repeat 1 39 0 366 156 42 0 chr11 25894737 25894833 -122888639 + GA-rich Low_complexity Low_complexity 1 100 0 1966 167 13 93 chr11 25895623 25895686 -122887786 - L1P LINE L1 -1082 6502 6436 2106 128 0 10 chr11 25895686 25895999 -122887473 - AluSg SINE Alu 0 310 1 1966 167 13 93 chr11 25895999 25896461 -122887011 - L1P LINE L1 -1148 6436 6019 8353 263 39 27 chr11 25896468 25900820 -122882652 - L1PA12 LINE L1 -3167 4417 9 261 146 0 0 chr11 25900881 25900929 -122882543 + (TA)n Simple_repeat Simple_repeat 1 48 0 3591 162 49 10 chr11 25900966 25901683 -122881789 - Tigger3(Golem) DNA MER2_type 0 3029 2285 547 204 0 0 chr11 25901686 25901779 -122881693 - Tigger3(Golem) DNA MER2_type -2922 107 15 21 57 0 0 chr11 25901994 25902029 -122881443 + AT_rich Low_complexity Low_complexity 1 35 0 412 310 91 9 chr11 25902665 25902897 -122880575 - LTR33A LTR ERVL -11 512 262 253 271 17 17 chr11 25903104 25903163 -122880309 - L2 LINE L2 0 3272 3214 1061 326 58 30 chr11 25903796 25904332 -122879140 + MLT1H1 LTR MaLR 3 553 -2 1218 167 129 8 chr11 25904764 25905004 -122878468 + AluJo SINE Alu 13 281 -31 252 59 0 0 chr11 25905624 25905658 -122877814 + (TATG)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr11 25906455 25906477 -122876995 + AT_rich Low_complexity Low_complexity 1 22 0 310 292 172 21 chr11 25907094 25907286 -122876186 - MLT1H1 LTR MaLR -2 553 333 250 227 15 0 chr11 25907403 25907469 -122876003 + L1MC4 LINE L1 6634 6700 -1342 1284 117 86 5 chr11 25907469 25907691 -122875781 - L1PA13 LINE L1 -8 6155 5916 718 130 52 9 chr11 25907695 25907810 -122875662 + L1PA12 LINE L1 11 130 -7451 21 0 0 0 chr11 25907893 25907914 -122875558 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr11 25909460 25909488 -122873984 + AT_rich Low_complexity Low_complexity 1 28 0 196 268 0 18 chr11 25910661 25910717 -122872755 - MIR SINE MIR -77 185 131 * 202 330 52 31 chr11 25910715 25910812 -122872660 + MIR SINE MIR 6 104 -158 28 48 0 0 chr11 25910959 25911001 -122872471 + AT_rich Low_complexity Low_complexity 1 42 0 189 213 133 27 chr11 25911228 25911303 -122872169 - MIR SINE MIR -57 205 123 2039 192 49 5 chr11 25911603 25912010 -122871462 - MSTA LTR MaLR -3 425 1 703 136 91 0 chr11 25912062 25912172 -122871300 + FLAM_C SINE Alu 3 122 -21 282 97 16 32 chr11 25912184 25912246 -122871226 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 830 161 24 81 chr11 25912853 25913122 -122870350 - L1M2 LINE L1 -744 5402 5206 1959 168 25 25 chr11 25913122 25913486 -122869986 - THE1B LTR MaLR 0 364 1 10674 112 3 33 chr11 25913486 25914136 -122869336 - THE1B-int LTR MaLR 0 1580 912 6954 52 9 6 chr11 25914136 25915628 -122867844 + L1PA5 LINE L1 4657 6151 -3 10674 112 3 33 chr11 25915628 25916606 -122866866 - THE1B-int LTR MaLR -668 912 1 1953 164 22 25 chr11 25916606 25916971 -122866501 - THE1B LTR MaLR 0 364 1 1719 212 46 23 chr11 25916972 25917410 -122866062 - L1M2 LINE L1 -937 5209 4762 1071 190 58 0 chr11 25917420 25917625 -122865847 + L1M3 LINE L1 5492 5708 -460 1631 180 7 14 chr11 25918166 25918455 -122865017 - AluJo SINE Alu -25 287 1 295 377 73 5 chr11 25918974 25919194 -122864278 + MIR SINE MIR 22 256 -6 1789 174 44 0 chr11 25919286 25919649 -122863823 - L1MA4A LINE L1 -14 6289 5911 1306 164 19 120 chr11 25919649 25919810 -122863662 + L1MA5 LINE L1 5623 5736 -564 1212 208 4 0 chr11 25919810 25920051 -122863421 + L1PA16 LINE L1 5906 6147 -19 1306 164 19 120 chr11 25920051 25920213 -122863259 + L1MA5 LINE L1 5736 5913 -387 980 211 4 32 chr11 25920567 25920809 -122862663 + Tigger7 DNA MER2_type 1 299 -434 * 1949 171 46 0 chr11 25920805 25921156 -122862316 + Tigger7 DNA MER2_type 2221 2587 0 301 377 105 40 chr11 25921573 25921849 -122861623 + L2 LINE L2 2979 3272 0 540 344 39 16 chr11 25922032 25922288 -122861184 + MIR SINE MIR 1 262 0 224 331 50 50 chr11 25922331 25922470 -122861002 - MIR SINE MIR -99 163 25 564 258 7 13 chr11 25924315 25924470 -122859002 + MER97c DNA MER1_type? 25 178 -912 428 377 13 18 chr11 25924647 25924875 -122858597 - MIR SINE MIR -32 230 4 195 310 22 88 chr11 25924915 25925141 -122858331 + L2 LINE L2 1447 1657 -1657 428 268 1 4 chr11 25925929 25926058 -122857414 + L1MC/D LINE L1 5705 5829 -346 696 299 54 45 chr11 25926108 25926443 -122857029 + MLT1I LTR MaLR 70 407 -2 747 324 55 26 chr11 25926504 25926887 -122856585 - HERV16 LTR ERVL -4106 890 497 439 272 27 14 chr11 25927156 25927303 -122856169 + L1MB8 LINE L1 6021 6169 -9 2327 150 16 5 chr11 25927476 25927903 -122855569 - L1MA6 LINE L1 0 6300 5869 255 164 91 0 chr11 25929396 25929451 -122854021 - L1PA16 LINE L1 0 6166 6107 4352 267 34 25 chr11 25929459 25930031 -122853441 - L1PA13 LINE L1 -3852 2945 2379 4832 37 3 7 chr11 25930031 25930626 -122852846 - L1PA4 LINE L1 -2 6153 5561 4352 267 34 25 chr11 25930626 25932427 -122851045 - L1PA13 LINE L1 -4418 2379 44 393 315 96 23 chr11 25932856 25933075 -122850397 - MIR SINE MIR -25 237 3 25 31 0 0 chr11 25933482 25933514 -122849958 + AT_rich Low_complexity Low_complexity 1 32 0 195 42 0 0 chr11 25933833 25933857 -122849615 + (CAAAA)n Simple_repeat Simple_repeat 4 27 0 242 208 0 52 chr11 25934424 25934520 -122848952 - L1MC4 LINE L1 -1339 6703 6613 1116 145 0 0 chr11 25934544 25934710 -122848762 + AluSq SINE Alu 131 296 -17 22 0 0 0 chr11 25935271 25935293 -122848179 + AT_rich Low_complexity Low_complexity 1 22 0 1302 209 46 20 chr11 25935687 25935989 -122847483 + AluJo SINE Alu 1 310 -2 265 406 42 9 chr11 25936394 25936606 -122846866 + MIR SINE MIR 6 224 -38 1110 253 34 57 chr11 25936798 25937150 -122846322 - MLT1H LTR MaLR -200 349 6 287 235 209 9 chr11 25937596 25937711 -122845761 + L2 LINE L2 3134 3271 -1 231 36 0 0 chr11 25937758 25937786 -122845686 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 185 0 40 0 chr11 25938814 25938839 -122844633 + (TAAAAA)n Simple_repeat Simple_repeat 6 31 0 262 296 64 32 chr11 25940456 25940581 -122842891 + L2 LINE L2 3185 3313 0 21 57 0 0 chr11 25941391 25941426 -122842046 + AT_rich Low_complexity Low_complexity 1 35 0 1374 225 32 11 chr11 25942337 25942706 -122840766 - L1MC3 LINE L1 -16 7769 7393 213 279 0 16 chr11 25943179 25943240 -122840232 - L2 LINE L2 -2632 682 623 1631 180 18 0 chr11 25944224 25944502 -122838970 + AluJo SINE Alu 11 293 -19 183 42 0 0 chr11 25944636 25944660 -122838812 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 330 357 48 40 chr11 25944675 25944902 -122838570 - MLT1L LTR MaLR -185 430 202 430 306 11 61 chr11 25946051 25946150 -122837322 + MER45B DNA AcHobo 2 90 -1491 2030 103 21 3 chr11 25946150 25946440 -122837032 - AluSg SINE Alu -15 295 1 430 306 11 61 chr11 25946440 25946520 -122836952 + MER45B DNA AcHobo 90 172 -1409 2109 217 67 21 chr11 25946529 25947096 -122836376 + MER45B DNA AcHobo 448 1040 0 400 354 49 13 chr11 25947121 25947531 -122835941 + ERVL LTR ERVL 4866 5287 -367 435 284 75 98 chr11 25947752 25948181 -122835291 + LTR16B LTR ERVL 44 462 -2 5119 33 0 0 chr11 25948200 25948802 -122834670 + L1PA3 LINE L1 5551 6152 -3 26 0 0 0 chr11 25948802 25948828 -122834644 + AT_rich Low_complexity Low_complexity 1 26 0 366 311 79 17 chr11 25948856 25949033 -122834439 - MIR SINE MIR -28 234 47 2151 120 0 22 chr11 25949118 25949435 -122834037 + AluSx SINE Alu 2 311 -1 301 123 0 62 chr11 25950874 25950939 -122832533 + L1PA6 LINE L1 6094 6154 0 180 350 17 60 chr11 25950972 25951089 -122832383 - MIR SINE MIR -86 176 65 277 623 0 6 chr11 25951385 25951560 -122831912 + polypyrimidine Low_complexity Low_complexity 2 175 0 267 31 0 0 chr11 25951560 25951592 -122831880 + (CA)n Simple_repeat Simple_repeat 1 32 0 32 0 0 0 chr11 25952622 25952654 -122830818 + AT_rich Low_complexity Low_complexity 1 32 0 232 183 0 17 chr11 25952656 25952716 -122830756 + LTR66 LTR ERVL 399 457 -153 * 286 333 20 0 chr11 25952685 25952787 -122830685 - MER117 DNA MER1_type -12 185 82 28 48 0 0 chr11 25953552 25953594 -122829878 + AT_rich Low_complexity Low_complexity 1 42 0 236 135 0 58 chr11 25953765 25953817 -122829655 - L1MA4A LINE L1 -30 6273 6225 309 315 110 30 chr11 25954574 25954774 -122828698 - L3 LINE CR1 -10 1567 1352 233 309 0 21 chr11 25954844 25954941 -122828531 + CT-rich Low_complexity Low_complexity 1 95 0 23 33 0 0 chr11 25956715 25956745 -122826727 + AT_rich Low_complexity Low_complexity 1 30 0 238 349 76 36 chr11 25957424 25957728 -122825744 + L2 LINE L2 2528 2843 -471 200 298 35 18 chr11 25958512 25958569 -122824903 - MER5B DNA MER1_type 0 178 121 27 49 0 0 chr11 25958732 25958773 -122824699 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr11 25959914 25959939 -122823533 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr11 25960148 25960169 -122823303 + AT_rich Low_complexity Low_complexity 1 21 0 570 288 13 9 chr11 25960181 25960514 -122822958 - L1ME2 LINE L1 -26 6138 5761 23 33 0 0 chr11 25960527 25960557 -122822915 + AT_rich Low_complexity Low_complexity 1 30 0 419 219 66 17 chr11 25960824 25960977 -122822495 + L1MA7 LINE L1 6126 6289 -2 261 130 0 0 chr11 25961336 25961382 -122822090 + L1MB2 LINE L1 6119 6164 -7 763 58 0 0 chr11 25961415 25961518 -122821954 - L1PA8 LINE L1 0 6172 6070 205 328 30 45 chr11 25961825 25961959 -122821513 + MIR SINE MIR 57 188 -74 25 0 0 0 chr11 25962230 25962255 -122821217 + AT_rich Low_complexity Low_complexity 1 25 0 344 313 0 0 chr11 25962501 25962597 -122820875 - L1MC4 LINE L1 -1333 6709 6614 281 163 0 0 chr11 25962599 25962648 -122820824 - AluJ/FLAM SINE Alu -211 91 43 38 0 0 0 chr11 25962852 25962890 -122820582 + AT_rich Low_complexity Low_complexity 1 38 0 535 249 13 94 chr11 25963009 25963242 -122820230 - L2 LINE L2 -5 3308 3095 2024 78 7 4 chr11 25963246 25963517 -122819955 + AluY SINE Alu 1 272 -39 2417 83 3 3 chr11 25963628 25963967 -122819505 + L1PA7 LINE L1 5816 6154 0 269 284 129 39 chr11 25964026 25964181 -122819291 + MIR SINE MIR 78 246 -16 2085 128 73 14 chr11 25965526 25965870 -122817602 + THE1B LTR MaLR 1 364 0 58 70 0 0 chr11 25965893 25966007 -122817465 + AT_rich Low_complexity Low_complexity 1 114 0 2299 96 7 0 chr11 25966451 25966754 -122816718 - AluSp SINE Alu -8 305 1 223 140 40 0 chr11 25967421 25967471 -122816001 + (TA)n Simple_repeat Simple_repeat 1 52 0 398 269 0 0 chr11 25967483 25967591 -122815881 - L1ME LINE L1 -356 5810 5703 2054 128 20 0 chr11 25967593 25967890 -122815582 + AluSq SINE Alu 1 303 -10 767 200 0 11 chr11 25967903 25968083 -122815389 + GA-rich Low_complexity Low_complexity 1 178 0 1577 255 73 26 chr11 25968085 25968960 -122814512 - L1ME LINE L1 -663 5579 4795 818 250 15 0 chr11 25969987 25970183 -122813289 - L1ME1 LINE L1 -140 6026 5828 225 94 0 0 chr11 25970355 25970387 -122813085 + (TA)n Simple_repeat Simple_repeat 1 32 0 235 95 0 0 chr11 25970390 25970432 -122813040 - LTR66 LTR ERVL -171 439 398 * 240 91 0 0 chr11 25970397 25970441 -122813031 + LTR66 LTR ERVL 395 438 -172 1047 252 28 8 chr11 25970476 25970726 -122812746 - MLT2D LTR ERVL -57 357 103 495 218 32 0 chr11 25971386 25971510 -122811962 + MLT2C1 LTR ERVL 1 128 -269 244 200 15 0 chr11 25971526 25971591 -122811881 - L1MA8 LINE L1 -5 6286 6221 238 205 74 131 chr11 25971591 25971713 -122811759 + MLT2C1 LTR ERVL 124 238 -159 1514 190 119 9 chr11 25971728 25972149 -122811323 - L1 LINE L1 -1667 4479 4013 3283 151 57 17 chr11 25972149 25972222 -122811250 + L1MA5A LINE L1 5615 5684 -613 1926 160 22 71 chr11 25972222 25972672 -122810800 - MSTB1 LTR MaLR -2 430 3 3283 151 57 17 chr11 25972672 25973249 -122810223 + L1MA5A LINE L1 5684 6291 -6 282 269 13 26 chr11 25973265 25973343 -122810129 + MLT2C1 LTR ERVL 234 310 -87 24 32 0 0 chr11 25973763 25973794 -122809678 + AT_rich Low_complexity Low_complexity 1 31 0 267 206 27 14 chr11 25973809 25973882 -122809590 + (TA)n Simple_repeat Simple_repeat 2 75 0 24388 45 42 2 chr11 25973968 25977087 -122806385 + L1P LINE L1 1 3244 -2902 361 342 123 18 chr11 25978375 25978603 -122804869 - MIR SINE MIR -10 252 1 1967 137 0 13 chr11 25978655 25978955 -122804517 + AluSx SINE Alu 1 296 -16 1591 227 54 33 chr11 25979108 25979500 -122803972 - MER101B LTR ERV1 -170 400 1 1393 280 25 2 chr11 25979516 25979959 -122803513 - L1M4 LINE L1 -996 5150 4698 222 37 0 0 chr11 25980274 25980301 -122803171 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 1847 164 0 0 chr11 25980301 25980581 -122802891 - AluSx SINE Alu -32 280 1 831 134 0 6 chr11 25980637 25980794 -122802678 + AluSx SINE Alu 44 286 -26 201 74 0 0 chr11 25980799 25980826 -122802646 + (TAA)n Simple_repeat Simple_repeat 2 28 0 26 50 0 0 chr11 25980922 25980962 -122802510 + AT_rich Low_complexity Low_complexity 1 40 0 261 261 76 42 chr11 25981923 25982042 -122801430 + L1ME3A LINE L1 6046 6168 -2 22 0 0 0 chr11 25982161 25982183 -122801289 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr11 25982350 25982384 -122801088 + AT_rich Low_complexity Low_complexity 1 34 0 206 244 0 0 chr11 25982973 25983018 -122800454 + (CATATA)n Simple_repeat Simple_repeat 6 50 0 304 346 77 58 chr11 25983624 25984089 -122799383 - L2 LINE L2 -15 3298 2825 2315 146 6 3 chr11 25986903 25987266 -122796206 + THE1B LTR MaLR 1 364 0 381 335 24 30 chr11 25987503 25987667 -122795805 + MER5B DNA MER1_type 7 169 -9 23 68 0 0 chr11 25988197 25988241 -122795231 + AT_rich Low_complexity Low_complexity 1 44 0 229 301 0 0 chr11 25988679 25988752 -122794720 - L2 LINE L2 -247 3066 2994 352 317 129 17 chr11 25988756 25989160 -122794312 - L2 LINE L2 -1000 2314 1866 22 35 0 0 chr11 25989374 25989403 -122794069 + AT_rich Low_complexity Low_complexity 1 29 0 730 192 7 0 chr11 25989405 25989556 -122793916 - L1MB3 LINE L1 -17 6166 6015 228 333 14 0 chr11 25989655 25989727 -122793745 - MIR SINE MIR -133 129 57 198 0 0 0 chr11 25989844 25989866 -122793606 + (A)n Simple_repeat Simple_repeat 1 22 0 1734 162 0 3 chr11 25989875 25990188 -122793284 + AluSx SINE Alu 1 312 0 1798 176 60 8 chr11 25990457 25990821 -122792651 - MLT1B LTR MaLR 0 390 8 663 158 20 41 chr11 25991643 25991789 -122791683 + AluSg/x SINE Alu 168 310 0 648 304 15 34 chr11 25992933 25993137 -122790335 - MIR SINE MIR -38 224 25 2115 87 16 23 chr11 25994396 25994705 -122788767 - AluSq SINE Alu -6 307 1 6418 175 16 25 chr11 25995022 25995135 -122788337 + Tigger1 DNA MER2_type 1172 1284 -1134 2481 49 0 3 chr11 25995135 25995439 -122788033 - AluY SINE Alu -8 303 1 6418 175 16 25 chr11 25995439 25996509 -122786963 + Tigger1 DNA MER2_type 1284 2346 -72 1642 155 43 43 chr11 25996509 25996883 -122786589 + THE1C LTR MaLR 1 374 -1 6418 175 16 25 chr11 25996883 25996938 -122786534 + Tigger1 DNA MER2_type 2346 2400 -18 296 350 111 9 chr11 25998555 25998772 -122784700 - MIR SINE MIR -18 244 6 1120 246 48 51 chr11 26000314 26000667 -122782805 - MLT1A1 LTR MaLR -3 362 11 375 23 0 0 chr11 26000673 26000717 -122782755 + (GA)n Simple_repeat Simple_repeat 1 44 0 1335 133 18 22 chr11 26000725 26000950 -122782522 - AluSg/x SINE Alu -11 301 78 23 0 0 0 chr11 26000955 26000978 -122782494 + AT_rich Low_complexity Low_complexity 1 23 0 220 337 48 42 chr11 26001520 26001686 -122781786 + MIR SINE MIR 95 261 -1 388 193 37 12 chr11 26001743 26001904 -122781568 + (TA)n Simple_repeat Simple_repeat 1 165 0 1381 209 23 0 chr11 26001910 26002169 -122781303 + AluJb SINE Alu 4 268 -44 22 0 0 0 chr11 26002820 26002842 -122780630 + AT_rich Low_complexity Low_complexity 1 22 0 181 312 55 37 chr11 26003268 26003377 -122780095 + L2 LINE L2 3192 3302 -11 2972 55 3 0 chr11 26003742 26004126 -122779346 - L1PA4 LINE L1 -1 6154 5770 4794 41 9 0 chr11 26004303 26005298 -122778174 - L1PA4 LINE L1 -366 5789 4790 2193 84 7 16 chr11 26005299 26005608 -122777864 + AluY SINE Alu 1 306 -5 3651 167 35 7 chr11 26006156 26006893 -122776579 + L1MA4 LINE L1 5542 6299 -1 480 248 81 78 chr11 26006917 26007239 -122776233 + L1M4b LINE L1 1213 1535 -5324 986 247 78 84 chr11 26007335 26008283 -122775189 - L1M4 LINE L1 -2570 3576 2635 1867 245 20 83 chr11 26008295 26009216 -122774256 + L1M4b LINE L1 2787 3764 -3193 1458 188 38 41 chr11 26009216 26009508 -122773964 + AluJo SINE Alu 1 291 -21 1867 245 20 83 chr11 26009508 26009523 -122773949 + L1M4b LINE L1 3764 3778 -3179 344 77 19 0 chr11 26009523 26009575 -122773897 + (TA)n Simple_repeat Simple_repeat 2 54 0 1867 245 20 83 chr11 26009575 26009779 -122773693 + L1M4b LINE L1 3778 3846 -3111 1943 139 3 7 chr11 26009782 26010083 -122773389 + AluSg SINE Alu 1 300 -10 960 214 50 56 chr11 26010091 26010394 -122773078 + L1M4b LINE L1 4583 4883 -2074 1116 269 69 7 chr11 26010395 26010800 -122772672 - L1MD2 LINE L1 -271 6348 5919 1771 223 46 3 chr11 26010807 26011116 -122772356 - LTR2 LTR ERV1 0 449 118 387 0 0 0 chr11 26011116 26011159 -122772313 + (TTA)n Simple_repeat Simple_repeat 2 44 0 1771 223 46 3 chr11 26011159 26011240 -122772232 - LTR2 LTR ERV1 -331 118 42 2179 167 8 5 chr11 26011317 26011838 -122771634 - HERVE LTR ERV1 -2 7811 7211 2420 254 68 37 chr11 26011844 26012809 -122770663 - L1MD2 LINE L1 -710 5909 4881 1297 252 0 13 chr11 26012809 26013122 -122770350 - AluJo SINE Alu -3 309 1 2420 254 68 37 chr11 26013122 26013666 -122769806 - L1MD2 LINE L1 -1738 4881 4355 389 308 0 8 chr11 26014465 26014598 -122768874 - L1MD2 LINE L1 -2051 4355 4224 219 143 26 65 chr11 26014609 26014686 -122768786 + (CATATA)n Simple_repeat Simple_repeat 5 78 0 1301 281 67 5 chr11 26014767 26015216 -122768256 - L1MD2 LINE L1 -5240 1169 693 22 0 0 0 chr11 26017129 26017151 -122766321 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr11 26017284 26017311 -122766161 + AT_rich Low_complexity Low_complexity 1 27 0 753 161 24 8 chr11 26019432 26019556 -122763916 + MSTB LTR MaLR 301 426 0 351 306 68 52 chr11 26022094 26022346 -122761126 + MIR SINE MIR 4 259 -3 499 291 53 90 chr11 26023490 26023813 -122759659 + L2 LINE L2 2606 2916 -398 526 316 27 7 chr11 26124115 26124310 -122659162 + MIR SINE MIR 3 198 -64 659 203 56 7 chr11 26124313 26124456 -122659016 + MER33 DNA MER1_type 1 150 -174 2368 77 3 0 chr11 26124458 26124757 -122658715 + AluY SINE Alu 2 301 -10 328 296 107 6 chr11 26125277 26125436 -122658036 - MIR SINE MIR -64 198 24 3893 73 8 0 chr11 26125457 26125966 -122657506 + L1P LINE L1 5 517 -5629 884 184 7 7 chr11 26126066 26126218 -122657254 + AluJo SINE Alu 115 266 -46 295 266 53 21 chr11 26126261 26126355 -122657117 - MER101B LTR ERV1 -276 294 198 341 203 13 38 chr11 26126656 26126735 -122656737 + MER5B DNA MER1_type 100 176 -2 32 91 0 0 chr11 26126816 26126904 -122656568 + AT_rich Low_complexity Low_complexity 1 88 0 510 243 0 43 chr11 26126997 26127182 -122656290 - Charlie1 DNA MER1_type -15 2746 2570 2337 81 0 3 chr11 26127380 26127687 -122655785 - AluY SINE Alu -5 306 1 216 246 29 0 chr11 26127779 26127865 -122655607 + (TA)n Simple_repeat Simple_repeat 1 88 0 292 172 29 3 chr11 26128182 26128250 -122655222 - L1MB8 LINE L1 -199 5965 5894 750 164 64 0 chr11 26128640 26128780 -122654692 + THE1C LTR MaLR 27 175 -200 1484 266 59 37 chr11 26128886 26129569 -122653903 - L1MC4 LINE L1 -633 7409 6712 8372 46 0 4 chr11 26129710 26130782 -122652690 - L1P LINE L1 -2128 4018 2951 382 239 108 74 chr11 26130882 26131058 -122652414 + MIR3 SINE MIR 1 182 -26 2883 124 140 22 chr11 26132532 26133081 -122650391 - LTR18B LTR ERVL 0 614 1 3085 282 11 13 chr11 26133610 26134440 -122649032 - HERV17 LTR ERV1 -2746 3903 3076 201 98 24 24 chr11 26134447 26134488 -122648984 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 2006 164 16 42 chr11 26134491 26134906 -122648566 - HERV17 LTR ERV1 -3568 3081 956 26 0 0 0 chr11 26135194 26135220 -122648252 + AT_rich Low_complexity Low_complexity 1 26 0 1407 170 17 94 chr11 26135925 26136330 -122647142 - L1MC3 LINE L1 -15 7770 7397 2416 45 0 0 chr11 26136445 26136734 -122646738 - L1P LINE L1 -5500 646 358 * 7061 34 0 0 chr11 26136727 26137589 -122645883 + L1P LINE L1 4442 5303 -843 198 330 28 38 chr11 26137769 26137875 -122645597 - L2 LINE L2 -788 2526 2422 197 162 0 0 chr11 26138017 26138054 -122645418 + L2 LINE L2 3277 3313 0 2608 39 3 0 chr11 26138298 26138606 -122644866 - AluY SINE Alu -2 309 1 221 258 45 0 chr11 26138787 26138853 -122644619 + (CATATA)n Simple_repeat Simple_repeat 4 72 0 2056 129 3 0 chr11 26139263 26139549 -122643923 - AluSx SINE Alu -20 292 6 1499 246 55 55 chr11 26140150 26140751 -122642721 + BaEV-int LTR ERV1 571 1171 -6614 * 2499 222 122 48 chr11 26140723 26141472 -122642000 + BaEV-int LTR ERV1 833 1636 -5013 1759 98 11 33 chr11 26141466 26141741 -122641731 + BaEV-int LTR ERV1 1871 2139 -4510 * 5666 40 3 0 chr11 26141841 26142532 -122640940 - L1P LINE L1 -1575 4571 3879 4684 81 0 2 chr11 26142522 26143166 -122640306 - L1P LINE L1 -3142 3004 2362 * 340 215 0 0 chr11 26143305 26143370 -122640102 + L1PA15-16 LINE L1 2830 2894 -3955 2077 153 11 25 chr11 26143370 26143730 -122639742 - THE1A LTR MaLR 0 355 1 7079 117 20 2 chr11 26143730 26144735 -122638737 - THE1A-int LTR MaLR 0 1580 558 1491 239 5 0 chr11 26144734 26145110 -122638362 + L1P LINE L1 4906 5283 -863 * 236 204 0 0 chr11 26145210 26145259 -122638213 + A-rich Low_complexity Low_complexity 1 49 0 1904 150 0 16 chr11 26145510 26145817 -122637655 + AluJo SINE Alu 1 302 -10 443 250 88 25 chr11 26145848 26146008 -122637464 + MIR SINE MIR 43 212 -50 203 297 94 43 chr11 26146346 26146484 -122636988 - MIR SINE MIR 0 262 118 912 133 38 0 chr11 26146773 26146931 -122636541 + L1MA5A LINE L1 6042 6205 -92 250 160 0 0 chr11 26146931 26146981 -122636491 + (TATATG)n Simple_repeat Simple_repeat 3 52 0 590 304 62 18 chr11 26147737 26147964 -122635508 + MIR SINE MIR 1 237 -25 474 250 50 0 chr11 26148139 26148259 -122635213 - MER94 DNA DNA -1 133 8 8761 35 1 1 chr11 26148506 26149578 -122633894 - L1P LINE L1 -905 5241 4170 354 328 20 20 chr11 26150086 26150281 -122633191 - MER66-int LTR ERV1 -5043 1633 1439 237 143 0 20 chr11 26151025 26151074 -122632398 - LTR26 LTR ERV1 -555 48 1 876 190 23 56 chr11 26151325 26151541 -122631931 + LOR1a LTR ERV1 289 497 0 208 390 6 41 chr11 26151645 26151817 -122631655 + L2 LINE L2 2926 3091 -181 734 261 50 33 chr11 26152615 26152975 -122630497 - MER69 DNA AcHobo -3 2523 2158 369 244 13 0 chr11 26154546 26154624 -122628848 + Tigger5 DNA MER2_type 1 79 -2244 353 107 0 0 chr11 26154617 26154673 -122628799 + Tigger5 DNA MER2_type 2081 2136 -187 * 1400 77 6 0 chr11 26155752 26155922 -122627550 + AluSx SINE Alu 3 173 -139 5333 170 29 18 chr11 26156022 26157416 -122626056 + L1MA4 LINE L1 4889 6300 0 2020 127 0 26 chr11 26157418 26157726 -122625746 + AluSx SINE Alu 1 300 -12 1028 51 0 0 chr11 26157743 26157861 -122625611 + AluY SINE Alu 1 118 -193 23 33 0 0 chr11 26158240 26158270 -122625202 + AT_rich Low_complexity Low_complexity 1 30 0 376 19 38 0 chr11 26158857 26158910 -122624562 + (TA)n Simple_repeat Simple_repeat 2 56 0 1751 146 10 17 chr11 26158910 26159205 -122624267 - AluSx SINE Alu -19 293 1 355 274 46 57 chr11 26159381 26159556 -122623916 + MIR SINE MIR 12 184 -78 1597 208 30 46 chr11 26159556 26160024 -122623448 + MER89 LTR ERV1 1 559 0 225 296 59 15 chr11 26160928 26161063 -122622409 + L1M4 LINE L1 3770 3910 -2236 24 0 0 0 chr11 26161088 26161112 -122622360 + AT_rich Low_complexity Low_complexity 1 24 0 299 379 37 23 chr11 26161240 26161454 -122622018 - MLT1I LTR MaLR -130 279 63 22 0 0 0 chr11 26161637 26161659 -122621813 + AT_rich Low_complexity Low_complexity 1 22 0 918 159 11 42 chr11 26161889 26162078 -122621394 + LTR5 LTR ERVK 787 969 0 2514 127 5 16 chr11 26162078 26162457 -122621015 + MER1A DNA MER1_type 53 427 -102 492 322 58 6 chr11 26162563 26162734 -122620738 + MIR SINE MIR 24 203 -59 224 167 21 0 chr11 26162734 26162782 -122620690 + (TG)n Simple_repeat Simple_repeat 1 49 0 342 273 11 0 chr11 26162782 26162870 -122620602 + L1MC4 LINE L1 6615 6703 -1339 285 102 51 0 chr11 26162877 26162936 -122620536 + (TA)n Simple_repeat Simple_repeat 1 62 0 237 264 0 0 chr11 26163501 26163554 -122619918 - MIR SINE MIR -10 252 200 189 323 15 0 chr11 26163911 26163976 -122619496 + MIR SINE MIR 197 262 0 1268 210 20 13 chr11 26164811 26165111 -122618361 - L1M4 LINE L1 -2028 4118 3817 2840 60 0 3 chr11 26165376 26165740 -122617732 - L1PA6 LINE L1 0 6154 5792 420 236 7 40 chr11 26165762 26165910 -122617562 - L1M4 LINE L1 -903 6662 6520 226 288 0 0 chr11 26165969 26166049 -122617423 + (TA)n Simple_repeat Simple_repeat 2 81 0 4957 184 12 25 chr11 26166050 26167021 -122616451 + Ricksha_b DNA DNA 1 959 -295 979 121 29 6 chr11 26167123 26167296 -122616176 + L1PA13 LINE L1 5986 6162 -1 * 5114 151 20 9 chr11 26167293 26168548 -122614924 + L1PA15 LINE L1 4909 6165 0 192 326 239 0 chr11 26170009 26170147 -122613325 - MIR SINE MIR -12 250 80 1655 182 3 17 chr11 26170878 26171169 -122612303 - AluJb SINE Alu -25 287 1 2644 245 120 25 chr11 26171172 26172590 -122610882 - L1M4 LINE L1 -3106 4459 2910 2083 107 0 0 chr11 26172590 26172879 -122610593 - L1PA6 LINE L1 0 6154 5866 11213 114 26 46 chr11 26172979 26173276 -122610196 + L1P LINE L1 2957 3258 -2888 2737 56 0 0 chr11 26173276 26173613 -122609859 + L1PA3 LINE L1 5814 6155 0 11213 114 26 46 chr11 26173613 26175279 -122608193 + L1P LINE L1 3258 4881 -1265 266 300 115 0 chr11 26175759 26175889 -122607583 - MIR SINE MIR -1 261 117 325 333 59 5 chr11 26177121 26177307 -122606165 - MLT1L LTR MaLR 0 615 420 2562 188 45 12 chr11 26177626 26178142 -122605330 - L1P4 LINE L1 -437 5724 5226 369 0 0 0 chr11 26178142 26178183 -122605289 + (TG)n Simple_repeat Simple_repeat 1 41 0 2562 188 45 12 chr11 26178183 26179415 -122604057 - L1P4 LINE L1 -935 5226 3729 359 159 29 0 chr11 26179416 26179485 -122603987 + L1P4 LINE L1 3656 3726 -2420 267 262 8 139 chr11 26179806 26179928 -122603544 + MLT1K LTR MaLR 67 172 -416 231 36 0 0 chr11 26180048 26180076 -122603396 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 595 348 91 45 chr11 26180080 26180335 -122603137 - L2 LINE L2 -13 3300 3013 2586 52 0 0 chr11 26180335 26180640 -122602832 + AluY SINE Alu 1 305 -6 595 348 91 45 chr11 26180640 26180847 -122602625 - L2 LINE L2 -300 3013 2817 259 297 14 43 chr11 26181029 26181167 -122602305 - HAL1 LINE L1 -1451 1056 923 896 204 66 0 chr11 26181393 26181560 -122601912 + MER5A DNA MER1_type 12 189 0 1404 246 52 48 chr11 26181792 26182252 -122601220 + MLT1C LTR MaLR 6 467 0 26 0 0 0 chr11 26182714 26182740 -122600732 + AT_rich Low_complexity Low_complexity 1 26 0 264 169 15 62 chr11 26183050 26183115 -122600357 - L1ME LINE L1 -289 5832 5771 554 121 0 0 chr11 26183976 26184059 -122599413 - AluSp/q SINE Alu -11 302 220 12850 38 1 0 chr11 26184198 26185764 -122597708 - L1P LINE L1 -1261 4885 3318 4112 186 39 12 chr11 26185763 26186692 -122596780 + L1 LINE L1 3611 4564 -1582 * 273 218 99 59 chr11 26186801 26186902 -122596570 + MIR SINE MIR 51 155 -107 5378 60 1 0 chr11 26187356 26188038 -122595434 - L1PA3 LINE L1 -3 6152 5470 736 75 57 0 chr11 26188038 26188144 -122595328 + L1PA3 LINE L1 5372 5483 -671 * 2249 258 53 23 chr11 26188142 26189508 -122593964 - L1M2 LINE L1 -4327 1708 323 435 356 54 0 chr11 26189508 26189730 -122593742 - L1M3a LINE L1 -5172 783 550 520 208 48 0 chr11 26189773 26189898 -122593574 - L1MC/D LINE L1 -554 5790 5660 1043 220 16 4 chr11 26189912 26190162 -122593310 + L1MD1 LINE L1 5647 5899 -460 2410 176 26 105 chr11 26190167 26190702 -122592770 + LTR42 LTR ERVL 1 493 -2 397 489 40 21 chr11 26190707 26191032 -122592440 + L1MD1 LINE L1 5904 6234 -8 2022 86 22 71 chr11 26191042 26191366 -122592106 + AluSc SINE Alu 1 308 -1 15799 153 23 13 chr11 26192520 26193128 -122590344 + L1MA3 LINE L1 268 868 -6697 958 25 17 0 chr11 26193128 26193246 -122590226 + L1PA4 LINE L1 6033 6152 -3 15799 153 23 13 chr11 26193246 26195265 -122588207 + L1MA3 LINE L1 868 2922 -4643 3003 215 46 4 chr11 26195250 26196030 -122587442 + L1MA3 LINE L1 3795 4607 -2958 * 5425 167 23 22 chr11 26196131 26197208 -122586264 + L1MA3 LINE L1 5332 6409 -1156 2250 169 77 2 chr11 26197177 26197621 -122585851 + L1MA3 LINE L1 7248 7724 0 * 226 350 175 10 chr11 26197649 26197746 -122585726 - L2 LINE L2 -38 3234 3122 185 327 18 103 chr11 26197939 26198104 -122585368 - L2 LINE L2 -476 2838 2688 2887 53 3 5 chr11 26198600 26198975 -122584497 - L1PA5 LINE L1 0 6154 5781 23 0 0 0 chr11 26199180 26199203 -122584269 + AT_rich Low_complexity Low_complexity 1 23 0 40 87 0 0 chr11 26200334 26200437 -122583035 + AT_rich Low_complexity Low_complexity 1 103 0 270 106 0 0 chr11 26200446 26200493 -122582979 + (CATA)n Simple_repeat Simple_repeat 2 48 0 271 285 14 95 chr11 26200633 26200854 -122582618 - MLT1K LTR MaLR -13 575 373 778 211 43 27 chr11 26200969 26201154 -122582318 + MER5A DNA MER1_type 2 189 0 280 308 19 37 chr11 26201577 26201684 -122581788 - MIR SINE MIR -97 165 61 19170 35 0 1 chr11 26202578 26205692 -122577780 - L1PA3 LINE L1 -3 6152 3039 255 182 36 0 chr11 26206101 26206156 -122577316 + LTR67 LTR ERVL 457 513 -44 864 179 25 20 chr11 26206158 26206359 -122577113 - L1 LINE L1 -3104 2866 2665 1577 274 56 26 chr11 26206372 26207027 -122576445 - L1 LINE L1 -3490 2480 1757 366 23 0 0 chr11 26207027 26207070 -122576402 + (TG)n Simple_repeat Simple_repeat 2 44 0 1577 274 56 26 chr11 26207070 26207615 -122575857 - L1 LINE L1 -4213 1757 1230 1822 293 42 51 chr11 26207616 26208854 -122574618 - L1 LINE L1 -4895 996 2 534 290 103 5 chr11 26208959 26209328 -122574144 - L1M4 LINE L1 -2940 3206 2802 528 371 62 11 chr11 26209476 26209834 -122573638 + L2 LINE L2 1498 1873 -1441 369 0 0 0 chr11 26210715 26210756 -122572716 + (TG)n Simple_repeat Simple_repeat 2 42 0 527 343 30 35 chr11 26210757 26211153 -122572319 + L1MEc LINE L1 257 650 -5746 5622 113 5 9 chr11 26211178 26212035 -122571437 - L1PA13 LINE L1 -4 6159 5307 1213 283 45 18 chr11 26212036 26212757 -122570715 + L1MEc LINE L1 673 1281 -4832 585 287 48 48 chr11 26212767 26213035 -122570437 - MLT1H LTR MaLR -142 407 140 204 217 0 0 chr11 26213055 26213101 -122570371 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 248 173 0 0 chr11 26213101 26213153 -122570319 - L1MC4 LINE L1 -1339 6703 6652 2736 91 3 5 chr11 26213528 26213912 -122569560 - L1PA13 LINE L1 0 6163 5781 253 298 37 55 chr11 26214184 26214242 -122569230 + L1MEc LINE L1 1041 1099 -5106 327 25 0 0 chr11 26214242 26214282 -122569190 + (TA)n Simple_repeat Simple_repeat 2 41 0 2181 108 7 0 chr11 26214282 26214578 -122568894 - AluSg SINE Alu -12 298 1 253 298 37 55 chr11 26214578 26214736 -122568736 + L1MEc LINE L1 1097 1254 -4951 372 263 22 104 chr11 26214747 26215064 -122568408 + L1MEc LINE L1 1519 1755 -861 367 309 122 16 chr11 26215295 26215541 -122567931 + L1MEc LINE L1 2023 2294 -4102 192 107 0 0 chr11 26215556 26215584 -122567888 - L2 LINE L2 -19 3294 3267 27 29 0 0 chr11 26216537 26216571 -122566901 + AT_rich Low_complexity Low_complexity 1 34 0 465 331 61 24 chr11 26216662 26216955 -122566517 + L2 LINE L2 3009 3312 -1 960 233 22 0 chr11 26217726 26217954 -122565518 + L1MEc LINE L1 3463 3695 -2520 367 312 8 8 chr11 26218105 26218230 -122565242 - L2 LINE L2 -1170 2144 2020 229 255 0 0 chr11 26218251 26218298 -122565174 + MLT1K LTR MaLR 345 391 -197 688 133 0 0 chr11 26218338 26218443 -122565029 + AluSx SINE Alu 1 105 -208 436 246 95 8 chr11 26218443 26218569 -122564903 - L2 LINE L2 -977 2337 2201 1130 189 0 5 chr11 26218571 26218772 -122564700 + AluSx SINE Alu 99 298 -14 6623 229 30 19 chr11 26220115 26221083 -122562389 + L1PB1 LINE L1 1426 2381 -3765 2057 140 3 0 chr11 26221083 26221390 -122562082 + AluSq SINE Alu 1 308 -5 6623 229 30 19 chr11 26221390 26222719 -122560753 + L1PB1 LINE L1 2376 3745 -2396 5586 120 8 5 chr11 26222719 26224121 -122559351 + L1PB1 LINE L1 4740 6147 -4 421 388 70 21 chr11 26224482 26224995 -122558477 - HERVL LTR ERVL -1714 3940 3443 242 325 98 0 chr11 26227216 26227339 -122556133 + L2 LINE L2 2919 3053 -219 528 243 72 7 chr11 26228270 26228422 -122555050 + MER69 DNA AcHobo 227 388 -838 * 1410 219 88 52 chr11 26228421 26228978 -122554494 + MER69 DNA AcHobo 1947 2523 -3 189 368 88 26 chr11 26230674 26230788 -122552684 - MIR SINE MIR -60 148 28 378 382 7 0 chr11 26230872 26231016 -122552456 - MIR3 SINE MIR -6 202 58 13638 65 8 2 chr11 26231245 26233067 -122550405 - L1PA6 LINE L1 -1796 4350 2517 7946 51 11 30 chr11 26233067 26234042 -122549430 + L1PA6 LINE L1 4353 5295 -859 2464 71 0 0 chr11 26234042 26234338 -122549134 + AluY SINE Alu 1 296 -15 7946 51 11 30 chr11 26234338 26235181 -122548291 + L1PA6 LINE L1 5295 6152 -2 25 31 0 0 chr11 26235371 26235403 -122548069 + AT_rich Low_complexity Low_complexity 1 32 0 1994 191 26 42 chr11 26235568 26236024 -122547448 + MLT1C LTR MaLR 19 467 0 26 64 0 0 chr11 26236060 26236107 -122547365 + AT_rich Low_complexity Low_complexity 1 47 0 399 294 149 17 chr11 26236217 26236452 -122547020 + L1ME4a LINE L1 5575 5840 -281 5170 125 42 8 chr11 26236478 26237423 -122546049 - L1PA16 LINE L1 0 6166 5191 657 241 94 128 chr11 26237591 26238069 -122545403 - MLT1C LTR MaLR 0 467 6 265 244 101 0 chr11 26238182 26238301 -122545171 - LTR37A LTR ERV1 0 426 296 344 224 40 13 chr11 26238590 26238666 -122544806 + MER58A DNA MER1_type 1 78 -29 463 224 95 104 chr11 26238694 26238935 -122544537 - LTR37B LTR ERV1 -113 355 117 1554 192 16 16 chr11 26238987 26239294 -122544178 - AluJb SINE Alu -5 307 1 299 294 9 0 chr11 26239696 26239805 -122543667 + (TA)n Simple_repeat Simple_repeat 1 110 0 1901 143 14 7 chr11 26240551 26240837 -122542635 + AluSx SINE Alu 1 288 -24 186 118 0 0 chr11 26240840 26240874 -122542598 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 281 282 0 14 chr11 26240875 26240946 -122542526 - L2 LINE L2 0 3272 3203 1241 342 79 3 chr11 26241084 26241724 -122541748 + L2 LINE L2 2447 3129 -184 396 0 0 0 chr11 26241876 26241920 -122541552 + (TG)n Simple_repeat Simple_repeat 2 45 0 660 303 179 17 chr11 26242107 26242460 -122541012 + LTR33 LTR ERVL 1 410 -111 228 129 0 0 chr11 26242489 26242520 -122540952 + LTR33 LTR ERVL 484 514 -7 483 343 85 52 chr11 26242523 26243133 -122540339 - L2 LINE L2 -668 2646 2017 27 81 0 0 chr11 26243579 26243641 -122539831 + AT_rich Low_complexity Low_complexity 1 62 0 1957 132 21 0 chr11 26243641 26243928 -122539544 - AluSq SINE Alu -20 293 1 24 67 0 0 chr11 26245127 26245172 -122538300 + AT_rich Low_complexity Low_complexity 1 45 0 3381 216 72 51 chr11 26245622 26246770 -122536702 - L1MC4 LINE L1 -6 8036 6865 22 56 0 0 chr11 26247225 26247261 -122536211 + AT_rich Low_complexity Low_complexity 1 36 0 283 222 26 26 chr11 26247520 26247673 -122535799 + (TA)n Simple_repeat Simple_repeat 2 154 0 2112 125 14 0 chr11 26248149 26248445 -122535027 + AluSx SINE Alu 9 308 -4 229 82 41 41 chr11 26248455 26248504 -122534968 + A-rich Low_complexity Low_complexity 2 50 0 320 325 37 32 chr11 26248682 26248870 -122534602 + MLT1J LTR MaLR 323 511 0 796 273 95 37 chr11 26248871 26249351 -122534121 + L2 LINE L2 2756 3310 -3 362 288 94 81 chr11 26249779 26250311 -122533161 + L1M4 LINE L1 4137 4675 -1471 1944 129 11 4 chr11 26250362 26250665 -122532807 + AluSx SINE Alu 1 305 0 245 267 19 57 chr11 26251112 26251217 -122532255 - HAL1 LINE L1 -725 1782 1682 357 374 71 41 chr11 26251300 26251594 -122531878 - HAL1 LINE L1 -2153 354 52 25 51 0 0 chr11 26251619 26251658 -122531814 + AT_rich Low_complexity Low_complexity 1 39 0 27 0 0 0 chr11 26252522 26252549 -122530923 + AT_rich Low_complexity Low_complexity 1 27 0 415 238 38 44 chr11 26252568 26252728 -122530744 + L1MDa LINE L1 28 186 -6354 850 186 91 74 chr11 26252751 26253090 -122530382 - L1MC3 LINE L1 -1629 6156 5812 1862 173 58 8 chr11 26253115 26253509 -122529963 - L1MA9 LINE L1 -1 6311 5898 2132 219 57 16 chr11 26253512 26254087 -122529385 - L1MA9 LINE L1 -334 5978 5380 2708 182 23 23 chr11 26254088 26254620 -122528852 + Tigger1 DNA MER2_type 2 533 -1885 8749 37 0 1 chr11 26254720 26256427 -122527045 - L1PA3 LINE L1 -155 6000 4296 6121 18 1 0 chr11 26256427 26257131 -122526341 + L1PA3 LINE L1 5449 6155 0 7730 133 27 92 chr11 26257148 26258758 -122524714 + Tigger1 DNA MER2_type 914 2418 0 2409 201 49 50 chr11 26258758 26259454 -122524018 - L1MA9 LINE L1 -765 5381 4687 429 232 146 5 chr11 26259557 26259719 -122523753 + L1MA9 LINE L1 3505 3697 -2449 288 0 0 0 chr11 26259719 26259751 -122523721 + (TAA)n Simple_repeat Simple_repeat 2 33 0 429 232 146 5 chr11 26259751 26259773 -122523699 + L1MA9 LINE L1 3697 3715 -2431 * 6111 153 26 54 chr11 26259772 26262099 -122521373 + L1MA9 LINE L1 4047 6311 -1 200 152 196 0 chr11 26263035 26263081 -122520391 + L2 LINE L2 3205 3259 -54 369 102 0 0 chr11 26263096 26263155 -122520317 + (TGAA)n Simple_repeat Simple_repeat 3 61 0 286 319 35 9 chr11 26264024 26264140 -122519332 + L3 LINE CR1 1453 1571 -6 26 0 0 0 chr11 26264220 26264246 -122519226 + AT_rich Low_complexity Low_complexity 1 26 0 247 274 0 0 chr11 26264426 26264499 -122518973 + T-rich Low_complexity Low_complexity 1 73 0 637 230 168 0 chr11 26265114 26265275 -122518197 - MER5A DNA MER1_type 0 189 2 444 318 113 55 chr11 26266246 26266661 -122516811 - MLT1K LTR MaLR -17 571 133 522 265 168 56 chr11 26267229 26267798 -122515674 + L2 LINE L2 2672 3313 0 388 109 0 0 chr11 26268201 26268256 -122515216 - MLT2A2 LTR ERVL 0 453 399 324 258 22 11 chr11 26268280 26268369 -122515103 - L1MC4 LINE L1 -1339 6703 6614 2880 78 21 8 chr11 26268389 26268776 -122514696 - MLT2A1 LTR ERVL -52 392 1 409 245 71 10 chr11 26269574 26269672 -122513800 + L2 LINE L2 3204 3307 -6 281 220 0 0 chr11 26270094 26270144 -122513328 + LTR67 LTR ERVL 507 556 -1 1544 205 30 0 chr11 26270198 26270495 -122512977 - MLT1A1 LTR MaLR -2 363 58 236 254 28 0 chr11 26270521 26270592 -122512880 - MLT1A1 LTR MaLR -301 73 1 21 0 0 0 chr11 26271337 26271358 -122512114 + AT_rich Low_complexity Low_complexity 1 21 0 559 244 74 37 chr11 26271711 26271981 -122511491 - HAL1 LINE L1 -955 1552 1273 271 264 55 55 chr11 26272066 26272267 -122511205 - HAL1 LINE L1 -1384 1123 923 17785 173 35 25 chr11 26272271 26276399 -122507073 - L1MA1 LINE L1 0 7721 3639 2099 118 6 13 chr11 26276399 26276714 -122506758 - AluSp SINE Alu 0 313 1 17785 173 35 25 chr11 26276714 26279182 -122504290 - L1MA1 LINE L1 -4082 3639 1021 3711 156 39 74 chr11 26279182 26279995 -122503477 - LTR1 LTR ERV1 0 785 1 17785 173 35 25 chr11 26279995 26281023 -122502449 - L1MA1 LINE L1 -6700 1021 6 505 279 12 18 chr11 26281028 26281193 -122502279 - HAL1 LINE L1 -1610 897 734 263 326 104 14 chr11 26281202 26281346 -122502126 + MIR SINE MIR 74 230 -32 837 179 0 7 chr11 26281358 26281509 -122501963 - LTR32 LTR ERVL -5 466 317 232 167 71 0 chr11 26281509 26281551 -122501921 - LTR32 LTR ERVL -103 368 324 1915 179 24 18 chr11 26281640 26281970 -122501502 - LTR32 LTR ERVL -119 352 21 615 311 55 25 chr11 26282096 26282331 -122501141 + MIR SINE MIR 8 249 -13 189 200 67 0 chr11 26282300 26282345 -122501127 + L2 LINE L2 3264 3311 -2 * 865 250 57 5 chr11 26282534 26282746 -122500726 - MER58A DNA MER1_type -1 223 1 22 56 0 0 chr11 26283513 26283549 -122499923 + AT_rich Low_complexity Low_complexity 1 36 0 219 283 132 13 chr11 26284328 26284457 -122499015 - MIR SINE MIR -13 249 104 192 77 0 0 chr11 26285063 26285089 -122498383 + (CAA)n Simple_repeat Simple_repeat 1 26 0 233 392 21 0 chr11 26285476 26285573 -122497899 + MIR SINE MIR 53 151 -111 245 379 103 0 chr11 26285576 26285721 -122497751 - L2 LINE L2 0 3313 3154 2642 190 22 59 chr11 26285840 26286818 -122496654 - L1M3 LINE L1 -383 5800 4848 * 5761 167 48 9 chr11 26286814 26286876 -122496596 + L1M4c LINE L1 1196 1254 -5130 483 63 0 0 chr11 26286876 26286939 -122496533 + (TA)n Simple_repeat Simple_repeat 1 63 0 5761 167 48 9 chr11 26286939 26288005 -122495467 + L1M4c LINE L1 1254 2368 -4016 353 330 73 15 chr11 26288082 26288288 -122495184 + LTR16C LTR ERVL 243 460 -31 193 375 106 19 chr11 26288342 26288598 -122494874 - L2 LINE L2 -662 2652 2375 441 349 57 29 chr11 26288736 26289051 -122494421 + LTR16C LTR ERVL 168 491 0 2057 99 44 96 chr11 26289177 26289395 -122494077 - THE1B LTR MaLR 0 364 173 2156 113 0 22 chr11 26289395 26289714 -122493758 + AluSq SINE Alu 2 313 0 2057 99 44 96 chr11 26289714 26289879 -122493593 - THE1B LTR MaLR -191 173 1 247 385 27 16 chr11 26289905 26290092 -122493380 - L2 LINE L2 -1896 1418 1230 311 314 51 39 chr11 26291945 26292101 -122491371 + MIR SINE MIR 84 241 -21 23778 59 2 2 chr11 26292290 26295373 -122488099 - L1PA5 LINE L1 -1912 4234 1150 9258 42 4 1 chr11 26295354 26297215 -122486257 + L1PA5 LINE L1 4237 6099 -55 * 238 233 0 17 chr11 26297215 26297275 -122486197 + LTR37B LTR ERV1 5 63 -405 988 174 22 5 chr11 26300664 26300848 -122482624 - MER5A DNA MER1_type -2 187 1 328 289 145 24 chr11 26300998 26301247 -122482225 + L2 LINE L2 3035 3313 0 307 289 63 21 chr11 26301688 26301830 -122481642 - L1ME4a LINE L1 -6 6115 5968 684 67 0 0 chr11 26302774 26302801 -122480671 + (TTCC)n Simple_repeat Simple_repeat 1 117 0 684 67 0 0 chr11 26302801 26302891 -122480581 + (TTCC)n Simple_repeat Simple_repeat 2 91 0 438 270 161 44 chr11 26303018 26303266 -122480206 - L2 LINE L2 -27 3286 3010 480 366 39 10 chr11 26303345 26303550 -122479922 - L2 LINE L2 -553 2761 2551 737 377 85 26 chr11 26303770 26304396 -122479076 - L2 LINE L2 -2285 1029 367 601 146 0 0 chr11 26304417 26304527 -122478945 + L1PA13 LINE L1 4784 4893 -1253 * 4822 117 21 16 chr11 26304523 26304665 -122478807 + L1PA13 LINE L1 5390 5530 -633 2716 85 3 0 chr11 26304665 26305019 -122478453 + THE1A LTR MaLR 1 355 0 4822 117 21 16 chr11 26305019 26305646 -122477826 + L1PA13 LINE L1 5530 6163 0 180 368 42 21 chr11 26305712 26305807 -122477665 - L2 LINE L2 -2977 337 241 780 298 36 30 chr11 26306049 26306385 -122477087 + MER93a LTR ERV1 63 400 -2 182 36 0 36 chr11 26307659 26307687 -122475785 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 315 0 0 0 chr11 26308031 26308066 -122475406 + (TG)n Simple_repeat Simple_repeat 2 36 0 205 292 79 22 chr11 26309853 26309942 -122473530 - MIR SINE MIR -26 236 143 407 272 29 10 chr11 26309945 26310047 -122473425 + MLT1E LTR MaLR 2 101 -492 2229 116 0 3 chr11 26310048 26310358 -122473114 - AluSx SINE Alu -3 309 1 2416 107 20 46 chr11 26310379 26310772 -122472700 + MER4B LTR ERV1 1 383 -227 699 252 15 2 chr11 26311359 26311534 -122471938 - MER5A DNA MER1_type 0 189 1 2616 143 36 2 chr11 26311693 26312141 -122471331 + L1PB3 LINE L1 5682 6144 -10 442 297 177 11 chr11 26312190 26312358 -122471114 - MIR SINE MIR -58 204 5 919 196 141 66 chr11 26312358 26312720 -122470752 + MLT1B LTR MaLR 1 389 -1 1350 244 146 25 chr11 26313505 26314066 -122469406 - L1ME3 LINE L1 -212 5950 5322 218 269 0 115 chr11 26314181 26314259 -122469213 - MER5A DNA MER1_type -6 183 115 * 232 323 188 0 chr11 26314223 26314319 -122469153 + MER5A DNA MER1_type 50 163 -26 341 253 24 12 chr11 26314580 26314663 -122468809 - L2 LINE L2 -38 3275 3192 296 296 34 45 chr11 26315085 26315352 -122468120 - L1M4 LINE L1 -3705 2441 2178 201 159 45 23 chr11 26315399 26315443 -122468029 + CT-rich Low_complexity Low_complexity 1 45 0 1310 260 97 20 chr11 26315518 26316044 -122467428 + MLT1F1 LTR MaLR 1 564 -3 21 0 0 0 chr11 26316331 26316352 -122467120 + AT_rich Low_complexity Low_complexity 1 21 0 3781 65 29 13 chr11 26316565 26317087 -122466385 - L1PA7 LINE L1 0 6154 5625 3902 134 50 54 chr11 26317114 26317892 -122465580 - LTR1 LTR ERV1 0 785 11 23 0 0 0 chr11 26318166 26318189 -122465283 + AT_rich Low_complexity Low_complexity 1 23 0 6959 72 13 3 chr11 26318533 26319699 -122463773 + L1PA8 LINE L1 4981 6152 -20 1411 193 111 0 chr11 26320056 26320362 -122463110 - MER58B DNA MER1_type -1 340 1 268 200 82 45 chr11 26320792 26320902 -122462570 + L1ME4a LINE L1 5990 6103 -18 23 0 0 0 chr11 26320916 26320939 -122462533 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr11 26321915 26321936 -122461536 + AT_rich Low_complexity Low_complexity 1 21 0 886 257 90 50 chr11 26322538 26323036 -122460436 + HAL1 LINE L1 647 1164 -1343 23 0 0 0 chr11 26323633 26323656 -122459816 + AT_rich Low_complexity Low_complexity 1 23 0 884 329 50 30 chr11 26323952 26324356 -122459116 + MLT1G1 LTR MaLR 3 414 -181 297 191 157 0 chr11 26324605 26324694 -122458778 + LTR47A LTR ERVL 261 363 -89 295 195 110 59 chr11 26324717 26324835 -122458637 + MLT1G1 LTR MaLR 366 489 -41 6356 125 35 1 chr11 26324835 26326510 -122456962 + L1PA13 LINE L1 4412 6145 -18 281 337 58 37 chr11 26326783 26326973 -122456499 - MIR SINE MIR -46 216 23 3802 33 0 4 chr11 26327177 26327653 -122455819 + L1PA3 LINE L1 5686 6159 0 272 253 13 0 chr11 26327678 26327753 -122455719 + L1ME LINE L1 5624 5699 -422 803 124 93 12 chr11 26327900 26328061 -122455411 + L1MB2 LINE L1 5996 6169 -2 2337 253 70 6 chr11 26328335 26329182 -122454290 - L1MCb LINE L1 -2758 3806 2906 757 203 0 0 chr11 26329189 26329322 -122454150 - FLAM_A SINE Alu -2 140 8 2201 237 114 48 chr11 26329332 26329605 -122453867 - L1MCb LINE L1 -3662 2902 2649 180 111 0 0 chr11 26329605 26329632 -122453840 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2201 237 114 48 chr11 26329632 26330052 -122453420 - L1MCb LINE L1 -3915 2649 2258 231 88 0 0 chr11 26330052 26330086 -122453386 + (TTA)n Simple_repeat Simple_repeat 1 34 0 2201 237 114 48 chr11 26330086 26330712 -122452760 - L1MCb LINE L1 -4306 2258 1496 * 2712 220 61 19 chr11 26330708 26331899 -122451573 - L1MCb LINE L1 -4849 1196 435 4197 201 77 61 chr11 26532429 26534017 -122249455 - MER52A LTR ERV1 0 1755 2 316 347 8 8 chr11 26534087 26534208 -122249264 + L1MEd LINE L1 543 663 -5456 1664 284 23 6 chr11 26534281 26534806 -122248666 + L1ME LINE L1 36 569 -5827 543 220 49 2 chr11 26534804 26534974 -122248498 + L1ME2 LINE L1 5784 5962 -200 * 587 205 8 0 chr11 26535066 26535188 -122248284 + L1MA10 LINE L1 6205 6327 -7 443 254 138 5 chr11 26535268 26535485 -122247987 + L1ME LINE L1 4015 4260 -1955 25 65 0 0 chr11 26535690 26535736 -122247736 + AT_rich Low_complexity Low_complexity 1 46 0 980 291 79 22 chr11 26535759 26536836 -122246636 + L1ME LINE L1 4580 5718 -521 260 187 133 120 chr11 26536949 26537099 -122246373 - MER112 DNA MER1_type -106 154 3 380 262 60 18 chr11 26537101 26537269 -122246203 + L1ME LINE L1 5718 5892 -347 508 263 29 0 chr11 26537270 26537441 -122246031 + L1ME3A LINE L1 5776 5951 -219 2404 57 0 16 chr11 26537607 26537922 -122245550 - AluY SINE Alu -1 310 1 659 215 89 141 chr11 26538663 26538721 -122244751 + MLT1J LTR MaLR 11 70 -441 1694 176 29 4 chr11 26538721 26539020 -122244452 - AluJb SINE Alu 0 306 1 659 215 89 141 chr11 26539020 26539444 -122244028 + MLT1J LTR MaLR 70 469 -42 273 331 25 32 chr11 26539895 26540052 -122243420 + L2 LINE L2 2903 3058 -214 381 292 9 0 chr11 26540236 26540349 -122243123 + MIR SINE MIR 129 242 -20 228 135 0 0 chr11 26541095 26541132 -122242340 + (TG)n Simple_repeat Simple_repeat 2 38 0 485 202 243 29 chr11 26541748 26541921 -122241551 + MIR SINE MIR 53 262 0 478 315 101 5 chr11 26541891 26542110 -122241362 - MIR SINE MIR -21 241 2 * 434 204 21 11 chr11 26542134 26542227 -122241245 + MIR SINE MIR 83 176 -86 21 57 0 0 chr11 26544341 26544376 -122239096 + AT_rich Low_complexity Low_complexity 1 35 0 371 312 16 26 chr11 26544561 26544750 -122238722 - MER5A DNA MER1_type 0 189 3 28 48 0 0 chr11 26545533 26545575 -122237897 + AT_rich Low_complexity Low_complexity 1 42 0 1905 93 4 30 chr11 26545726 26545994 -122237478 + AluSx SINE Alu 34 294 -18 2581 159 8 8 chr11 26546143 26546614 -122236858 + L1MB5 LINE L1 5702 6172 -2 799 286 63 0 chr11 26546640 26546892 -122236580 - Charlie8 DNA MER1_type -2146 271 4 924 182 41 82 chr11 26547499 26547818 -122235654 - L1MD3 LINE L1 -14 7981 7676 585 217 36 39 chr11 26547793 26548055 -122235417 - L1MC4a LINE L1 -1449 6359 6083 * 1668 170 39 26 chr11 26548170 26548476 -122234996 + AluJo SINE Alu 1 310 -2 191 372 104 11 chr11 26549709 26549892 -122233580 + L2 LINE L2 1983 2182 -1132 193 305 0 17 chr11 26550024 26550083 -122233389 + L3 LINE CR1 1518 1575 -2 213 340 68 68 chr11 26550403 26550609 -122232863 - L2 LINE L2 -339 2975 2770 302 327 68 12 chr11 26550882 26551044 -122232428 - L2 LINE L2 -580 2734 2564 298 195 356 8 chr11 26551069 26551187 -122232285 - MER5B DNA MER1_type 0 178 20 649 166 55 43 chr11 26552186 26552349 -122231123 - MER97b DNA MER1_type? -888 165 1 1554 255 42 5 chr11 26552551 26552998 -122230474 + LTR16B LTR ERVL 1 464 0 35049 83 8 10 chr11 26553032 26554370 -122229102 + L1PA6 LINE L1 174 1513 -4641 2369 60 40 0 chr11 26554370 26554669 -122228803 + AluY SINE Alu 1 311 0 35049 83 8 10 chr11 26554669 26559329 -122224143 + L1PA6 LINE L1 1513 6154 0 615 278 64 0 chr11 26559559 26559732 -122223740 - MIR SINE MIR -13 249 66 2294 97 0 0 chr11 26559739 26560037 -122223435 - AluSq SINE Alu -15 298 1 5844 110 10 10 chr11 26561070 26562237 -122221235 - L1PA16 LINE L1 0 6166 5005 388 346 94 10 chr11 26562703 26562905 -122220567 + L2 LINE L2 3012 3230 -42 359 299 0 68 chr11 26563353 26563560 -122219912 + HAL1 LINE L1 5 197 -2310 348 293 105 8 chr11 26563579 26563712 -122219760 - HAL1 LINE L1 -1497 1010 865 1106 237 105 82 chr11 26563906 26564593 -122218879 + HAL1 LINE L1 606 1308 -1199 283 159 29 14 chr11 26564638 26564707 -122218765 + HAL1 LINE L1 2431 2500 -7 1908 150 3 42 chr11 26564834 26565141 -122218331 - AluJo SINE Alu -17 295 1 2204 265 114 124 chr11 26565372 26565657 -122217815 + L2 LINE L2 444 730 -2584 788 220 18 0 chr11 26565657 26565825 -122217647 - FAM SINE Alu -4 171 1 2204 265 114 124 chr11 26565825 26566708 -122216764 + L2 LINE L2 730 1620 -1694 2224 77 19 39 chr11 26566708 26567018 -122216454 - AluSq SINE Alu -9 304 1 2204 265 114 124 chr11 26567018 26568209 -122215263 + L2 LINE L2 1620 2780 -534 632 26 13 0 chr11 26568863 26568965 -122214507 - AluSg/x SINE Alu 0 308 206 21 0 0 0 chr11 26568979 26569000 -122214472 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr11 26569044 26569066 -122214406 + AT_rich Low_complexity Low_complexity 1 22 0 694 196 0 8 chr11 26569209 26569342 -122214130 - FLAM_C SINE Alu -1 132 1 2347 94 3 3 chr11 26569378 26569687 -122213785 + AluSc SINE Alu 1 309 0 1204 165 0 46 chr11 26569768 26569986 -122213486 + AluJo SINE Alu 87 294 -18 26 0 0 0 chr11 26569992 26570018 -122213454 + AT_rich Low_complexity Low_complexity 1 26 0 265 259 6 62 chr11 26573123 26573285 -122210187 + T-rich Low_complexity Low_complexity 4 156 0 393 309 29 43 chr11 26573461 26573569 -122209903 + L2 LINE L2 3134 3241 -31 2021 109 103 32 chr11 26573569 26573909 -122209563 + THE1B LTR MaLR 1 364 0 393 309 29 43 chr11 26573909 26573939 -122209533 + L2 LINE L2 3241 3270 -2 352 265 8 34 chr11 26574002 26574119 -122209353 - L1MC4 LINE L1 -1316 6726 6613 * 357 267 0 0 chr11 26574036 26574126 -122209346 + L1MC4 LINE L1 6614 6703 -1339 866 248 5 33 chr11 26574288 26574502 -122208970 + MER58A DNA MER1_type 2 209 -15 2321 91 0 3 chr11 26574854 26575150 -122208322 + AluSx SINE Alu 5 299 -13 252 391 9 0 chr11 26575295 26575405 -122208067 - L3 LINE CR1 -7 1570 1460 736 258 50 0 chr11 26575418 26575600 -122207872 - MIR SINE MIR -1 261 71 336 274 29 115 chr11 26575600 26576009 -122207463 + L1ME1 LINE L1 3313 3686 -2460 206 258 24 48 chr11 26576051 26576175 -122207297 + (CATATA)n Simple_repeat Simple_repeat 6 126 0 27 0 0 0 chr11 26576269 26576296 -122207176 + AT_rich Low_complexity Low_complexity 1 27 0 1961 220 61 54 chr11 26576325 26577019 -122206453 + L1ME1 LINE L1 4394 5095 -1051 6488 23 0 0 chr11 26577019 26577767 -122205705 - L1PA4 LINE L1 -3 6152 5405 1961 220 61 54 chr11 26577767 26577863 -122205609 + L1ME1 LINE L1 5095 5189 -957 1562 124 5 0 chr11 26577918 26578135 -122205337 + AluSg/x SINE Alu 74 291 -21 418 131 36 0 chr11 26578155 26578239 -122205233 + GA-rich Low_complexity Low_complexity 4 90 0 385 223 86 0 chr11 26578239 26578378 -122205094 + L1ME1 LINE L1 5188 5338 -808 2759 182 52 72 chr11 26578419 26578447 -122205025 + L1ME1 LINE L1 5349 5376 -958 1760 140 79 50 chr11 26578447 26578826 -122204646 + MLT1B LTR MaLR 1 390 0 2759 182 52 72 chr11 26578826 26579645 -122203827 + L1ME1 LINE L1 5376 6334 0 283 189 0 0 chr11 26579938 26579991 -122203481 + L2 LINE L2 3261 3313 0 28 29 0 0 chr11 26580086 26580121 -122203351 + AT_rich Low_complexity Low_complexity 1 35 0 183 80 0 0 chr11 26580531 26580556 -122202916 + (A)n Simple_repeat Simple_repeat 1 25 0 382 248 85 23 chr11 26581445 26581574 -122201898 - L2 LINE L2 -5 3308 3172 2069 146 3 0 chr11 26583838 26584140 -122199332 + AluSx SINE Alu 9 311 -1 348 301 26 9 chr11 26584151 26584264 -122199208 - L1MC4 LINE L1 -1318 6724 6610 37 23 0 0 chr11 26585182 26585226 -122198246 + AT_rich Low_complexity Low_complexity 1 44 0 23 33 0 0 chr11 26585337 26585367 -122198105 + AT_rich Low_complexity Low_complexity 1 30 0 226 289 89 44 chr11 26585586 26585676 -122197796 + MIR SINE MIR 34 127 -81 581 218 184 0 chr11 26586166 26586313 -122197159 - MIR SINE MIR -71 191 18 1441 148 72 48 chr11 26586314 26586604 -122196868 + AluJb SINE Alu 3 299 -13 449 276 16 24 chr11 26586655 26586778 -122196694 - MIR SINE MIR -124 138 17 228 254 0 0 chr11 26587037 26587096 -122196376 + (TA)n Simple_repeat Simple_repeat 1 59 0 415 264 86 7 chr11 26587298 26587438 -122196034 - MIR SINE MIR -55 207 57 2341 98 10 0 chr11 26587737 26588044 -122195428 - AluSp SINE Alu -3 310 1 29 60 0 0 chr11 26588115 26588165 -122195307 + AT_rich Low_complexity Low_complexity 1 50 0 444 116 0 0 chr11 26588592 26588678 -122194794 + (GGGTG)n Simple_repeat Simple_repeat 4 89 0 24 0 0 0 chr11 26589048 26589072 -122194400 + AT_rich Low_complexity Low_complexity 1 24 0 920 164 188 0 chr11 26589153 26589360 -122194112 + L1MD3 LINE L1 7741 7986 -9 539 161 107 0 chr11 26589375 26589487 -122193985 + L1MC1 LINE L1 5900 6023 -310 3210 62 14 0 chr11 26589509 26589930 -122193542 - MLT2A2 LTR ERVL -26 427 1 1137 164 63 34 chr11 26589930 26590168 -122193304 + L1MC1 LINE L1 6081 6325 -8 270 244 13 26 chr11 26590832 26590910 -122192562 - L2 LINE L2 -18 3254 3178 309 258 129 0 chr11 26590954 26591047 -122192425 - MIR SINE MIR -36 226 122 297 347 31 0 chr11 26591111 26591209 -122192263 + MIR SINE MIR 14 114 -148 586 306 22 22 chr11 26591322 26591551 -122191921 - MIR SINE MIR -31 231 3 180 0 0 0 chr11 26592076 26592096 -122191376 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 367 355 111 21 chr11 26593769 26594003 -122189469 + MIR SINE MIR 2 256 -6 1964 158 10 3 chr11 26594318 26594628 -122188844 + AluJb SINE Alu 1 312 0 240 57 94 19 chr11 26594637 26594690 -122188782 + GA-rich Low_complexity Low_complexity 3 59 0 210 190 0 35 chr11 26594876 26594934 -122188538 + (CATATA)n Simple_repeat Simple_repeat 6 61 0 23 0 0 0 chr11 26595546 26595569 -122187903 + AT_rich Low_complexity Low_complexity 1 23 0 194 284 149 50 chr11 26595859 26596000 -122187472 + MIR SINE MIR 103 257 -5 * 550 217 39 23 chr11 26595977 26596106 -122187366 - MIR SINE MIR -50 212 82 1757 191 14 20 chr11 26596127 26596484 -122186988 + MLT1A1 LTR MaLR 5 359 -6 2219 129 21 21 chr11 26596577 26596950 -122186522 + THE1C LTR MaLR 1 373 -2 822 264 5 10 chr11 26597061 26597269 -122186203 - LTR33 LTR ERVL -271 250 44 1740 76 5 5 chr11 26597523 26597746 -122185726 + AluSp SINE Alu 1 223 -90 366 270 30 10 chr11 26597746 26597846 -122185626 - LTR33 LTR ERVL -366 155 54 461 65 65 0 chr11 26597890 26597967 -122185505 + AluSp SINE Alu 228 309 -4 203 194 0 0 chr11 26598322 26598358 -122185114 + (TTA)n Simple_repeat Simple_repeat 2 37 0 539 145 51 0 chr11 26599017 26599134 -122184338 - L1MA9 LINE L1 -40 6272 6150 2066 128 50 39 chr11 26599247 26599607 -122183865 + THE1B LTR MaLR 1 364 0 1810 169 156 5 chr11 26599712 26600084 -122183388 - MSTA LTR MaLR 0 428 1 779 303 36 0 chr11 26600583 26600804 -122182668 + L2 LINE L2 2615 2843 -471 * 811 265 23 18 chr11 26600783 26601002 -122182470 + L2 LINE L2 3092 3311 -2 261 304 51 0 chr11 26601699 26601778 -122181694 + MIR SINE MIR 48 130 -78 * 448 217 66 9 chr11 26601768 26601874 -122181598 + L2 LINE L2 3199 3310 -3 295 326 56 0 chr11 26602257 26602346 -122181126 + MIR3 SINE MIR 86 179 -29 382 242 105 0 chr11 26602488 26602612 -122180860 - MLT1H1 LTR MaLR -24 531 395 233 202 0 119 chr11 26602687 26602771 -122180701 - MLT1H1 LTR MaLR -306 224 151 230 253 10 71 chr11 26602822 26602921 -122180551 - MLT1H1 LTR MaLR -471 122 30 2233 131 95 8 chr11 26602988 26603378 -122180094 - MSTA LTR MaLR 0 428 5 1922 136 44 14 chr11 26603914 26604435 -122179037 + L1PA15 LINE L1 4776 5280 -885 202 56 56 0 chr11 26604435 26604471 -122179001 + A-rich Low_complexity Low_complexity 3 40 0 1922 136 44 14 chr11 26604471 26605239 -122178233 + L1PA15 LINE L1 5280 6152 -13 635 252 29 33 chr11 26605307 26605336 -122178136 - MIR SINE MIR -41 221 193 2820 107 12 16 chr11 26605336 26605766 -122177706 - MSTA LTR MaLR 0 428 1 635 252 29 33 chr11 26605766 26605929 -122177543 - MIR SINE MIR -69 193 31 208 289 0 0 chr11 26605917 26605969 -122177503 - L2 LINE L2 0 3272 3221 * 208 333 0 0 chr11 26607910 26607982 -122175490 - L2 LINE L2 -954 2360 2289 559 307 0 22 chr11 26608103 26608282 -122175190 + L3 LINE CR1 639 813 -764 394 272 164 15 chr11 26608283 26608478 -122174994 + L3 LINE CR1 1183 1406 -171 1017 280 80 48 chr11 26608496 26608661 -122174811 - L2 LINE L2 -1 3312 3154 2212 104 0 7 chr11 26608661 26608958 -122174514 + AluSx SINE Alu 1 295 -17 1017 280 80 48 chr11 26608958 26609535 -122173937 - L2 LINE L2 -159 3154 2536 266 275 14 99 chr11 26610127 26610269 -122173203 + L2 LINE L2 2672 2801 -513 382 236 63 24 chr11 26610269 26610396 -122173076 - MER94 DNA DNA 0 134 3 265 301 115 2 chr11 26610435 26610585 -122172887 + L2 LINE L2 2829 2993 -279 204 40 0 0 chr11 26610589 26610614 -122172858 + (TCC)n Simple_repeat Simple_repeat 1 25 0 189 147 0 0 chr11 26610957 26610991 -122172481 + (TA)n Simple_repeat Simple_repeat 1 34 0 399 163 31 108 chr11 26611040 26611129 -122172343 - L1MB8 LINE L1 -167 5995 5920 2007 97 3 88 chr11 26611129 26611449 -122172023 + AluSg1 SINE Alu 1 293 -16 399 163 31 108 chr11 26611449 26611506 -122171966 - L1MB8 LINE L1 -242 5920 5860 30419 95 5 11 chr11 26611515 26617259 -122166213 - L1PA7 LINE L1 0 6469 739 443 270 45 67 chr11 26617264 26617362 -122166110 - MARNA DNA Mariner -156 430 331 1577 169 29 7 chr11 26617362 26617670 -122165802 - AluJb SINE Alu 0 314 1 443 270 45 67 chr11 26617670 26617837 -122165635 - MARNA DNA Mariner -255 331 170 259 215 31 0 chr11 26619239 26619304 -122164168 + MER112 DNA MER1_type 7 73 -187 212 265 6 161 chr11 26619558 26619720 -122163752 - MIR3 SINE MIR -54 154 18 887 193 34 42 chr11 26619783 26620022 -122163450 + MLT1A2 LTR MaLR 138 374 0 204 274 20 0 chr11 26620233 26620284 -122163188 + L2 LINE L2 3209 3260 -12 311 303 156 18 chr11 26620342 26620451 -122163021 + L2 LINE L2 3139 3262 -10 351 274 19 13 chr11 26620916 26621073 -122162399 + L1ME4a LINE L1 5960 6117 -4 285 357 7 0 chr11 26621089 26621229 -122162243 + L2 LINE L2 2359 2499 -815 998 203 0 24 chr11 26621261 26621468 -122162004 - MLT1A2 LTR MaLR 0 374 173 555 228 168 54 chr11 26621496 26621822 -122161650 - MLT1G1 LTR MaLR -29 521 161 504 211 32 68 chr11 26621824 26622014 -122161458 - L1MC5 LINE L1 -600 7361 7179 376 220 240 33 chr11 26622790 26622940 -122160532 - MER5A DNA MER1_type -1 188 8 200 330 87 17 chr11 26623377 26623492 -122159980 - MIR SINE MIR -75 187 65 505 234 120 25 chr11 26623739 26623897 -122159575 + MIR SINE MIR 90 262 0 1944 147 19 25 chr11 26624178 26624492 -122158980 - AluSx SINE Alu 0 312 1 271 353 0 39 chr11 26624542 26624698 -122158774 - MIR SINE MIR -46 216 67 262 164 45 15 chr11 26624765 26624832 -122158640 + MER116 DNA Mariner 12 80 0 379 308 122 6 chr11 26624836 26625008 -122158464 - MIR SINE MIR -58 204 13 574 310 49 5 chr11 26625112 26625296 -122158176 - MIR SINE MIR -60 202 11 639 216 72 7 chr11 26625310 26625449 -122158023 + MER5B DNA MER1_type 31 178 0 623 272 116 46 chr11 26627122 26628042 -122155430 - L1MEd LINE L1 -978 5151 4167 1735 131 98 12 chr11 26628149 26628369 -122155103 + L1PA16 LINE L1 5810 6069 -97 2064 92 0 0 chr11 26628369 26628629 -122154843 + AluSc SINE Alu 37 296 -13 1735 131 98 12 chr11 26628629 26628736 -122154736 + L1PA16 LINE L1 6069 6165 -1 318 146 135 34 chr11 26628842 26628931 -122154541 - L1MEd LINE L1 -2186 3943 3846 425 296 123 31 chr11 26629071 26629463 -122154009 - L1MEd LINE L1 -2513 3616 3182 228 195 0 0 chr11 26629874 26629915 -122153557 + LTR16A LTR ERVL 397 437 -13 249 264 15 91 chr11 26630037 26630150 -122153322 - L1MEd LINE L1 -3068 3061 2968 1989 111 9 22 chr11 26630150 26630465 -122153007 - AluSx SINE Alu 0 312 2 249 264 15 91 chr11 26630465 26630548 -122152924 - L1MEd LINE L1 -3161 2968 2880 617 311 54 11 chr11 26630548 26630871 -122152601 + MLT1I LTR MaLR 1 390 -19 319 286 23 96 chr11 26630885 26630966 -122152506 - L1MEd LINE L1 -3244 2885 2800 2404 69 10 7 chr11 26630966 26631269 -122152203 - AluSp SINE Alu -9 304 1 319 286 23 96 chr11 26631269 26631407 -122152065 - L1MEd LINE L1 -3329 2800 2682 307 236 13 191 chr11 26631652 26631809 -122151663 - L1MEd LINE L1 -5510 609 481 27 0 0 26 chr11 26632156 26632176 -122151296 + AT_rich Low_complexity Low_complexity 1 21 -16 201 39 0 0 chr11 26632180 26632206 -122151266 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 1995 136 14 0 chr11 26632206 26632488 -122150984 - AluSx SINE Alu -21 287 1 27 0 0 26 chr11 26632488 26632505 -122150967 + AT_rich Low_complexity Low_complexity 21 37 0 497 328 150 12 chr11 26633165 26633412 -122150060 + L2 LINE L2 2992 3272 0 640 243 56 55 chr11 26634422 26634534 -122148938 + MIR SINE MIR 11 121 -141 2508 103 41 0 chr11 26634534 26634875 -122148597 - LTR18A LTR ERVL 0 357 3 640 243 56 55 chr11 26634875 26635009 -122148463 + MIR SINE MIR 121 249 -13 478 314 159 14 chr11 26635945 26636165 -122147307 + L3 LINE CR1 1303 1554 -23 1874 127 84 0 chr11 26636537 26636821 -122146651 + AluSx SINE Alu 1 308 -4 449 77 0 86 chr11 26636833 26636950 -122146522 + (GGGGA)n Simple_repeat Simple_repeat 4 110 0 401 226 157 88 chr11 26637195 26637354 -122146118 + MER5A DNA MER1_type 14 183 -6 2242 157 33 19 chr11 26637407 26637827 -122145645 + MSTB LTR MaLR 1 426 0 1981 145 0 3 chr11 26638978 26639260 -122144212 - AluSx SINE Alu -31 281 1 342 321 64 14 chr11 26639967 26640147 -122143325 - MIR3 SINE MIR -61 147 3 2898 129 0 5 chr11 26640178 26640605 -122142867 - MSTC LTR MaLR -1 427 3 28 29 0 0 chr11 26641277 26641312 -122142160 + AT_rich Low_complexity Low_complexity 1 35 0 1010 33 0 0 chr11 26641312 26641432 -122142040 - L1PA5 LINE L1 -8 6146 6027 384 308 75 0 chr11 26641496 26641616 -122141856 + L2 LINE L2 3181 3309 -4 364 248 0 0 chr11 26642555 26642656 -122140816 + MER113 DNA MER1_type? 6 106 -415 2447 35 41 0 chr11 26642770 26643060 -122140412 + AluY SINE Alu 1 302 -9 525 308 109 51 chr11 26643385 26644044 -122139428 - L1M2 LINE L1 -5716 1133 445 378 232 53 33 chr11 26644203 26644354 -122139118 + L1ME4a LINE L1 5956 6109 -12 539 205 83 26 chr11 26645030 26645186 -122138286 + L1MC4 LINE L1 7878 8042 0 221 191 0 48 chr11 26645647 26645689 -122137783 - L2 LINE L2 -94 3219 3180 311 340 97 34 chr11 26645768 26646379 -122137093 + L2 LINE L2 2203 2851 -463 250 304 29 0 chr11 26646506 26646575 -122136897 + MIR SINE MIR 16 86 -176 1349 85 0 0 chr11 26646578 26646755 -122136717 - AluY SINE Alu -2 309 133 411 284 57 35 chr11 26646775 26646916 -122136556 + MIR SINE MIR 106 249 -13 233 381 68 0 chr11 26647004 26647122 -122136350 + L2 LINE L2 3141 3266 -6 202 271 0 0 chr11 26648154 26648202 -122135270 - L2 LINE L2 -3 3310 3263 362 316 86 7 chr11 26649086 26649225 -122134247 + MIR3 SINE MIR 9 158 -50 287 200 27 127 chr11 26652357 26652507 -122130965 + L1MC5 LINE L1 7732 7866 -95 241 245 49 43 chr11 26652611 26652732 -122130740 + MIR SINE MIR 38 162 -62 23 33 0 0 chr11 26654586 26654616 -122128856 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr11 26656434 26656458 -122127014 + AT_rich Low_complexity Low_complexity 1 24 0 295 310 145 0 chr11 26656652 26656797 -122126675 + MIR SINE MIR 91 256 -6 204 278 104 62 chr11 26656869 26657013 -122126459 - MIR SINE MIR -56 206 57 343 220 318 8 chr11 26658449 26658581 -122124891 - MER5A DNA MER1_type -1 188 16 1834 183 0 16 chr11 26658952 26659264 -122124208 - AluJo SINE Alu -5 307 1 284 107 36 18 chr11 26659614 26659670 -122123802 + MIR SINE MIR 85 141 -67 1945 159 0 7 chr11 26659959 26660261 -122123211 - AluJb SINE Alu -12 300 1 1921 142 0 43 chr11 26662102 26662427 -122121045 + AluJo SINE Alu 2 312 0 236 291 8 102 chr11 26662457 26662584 -122120888 + L2 LINE L2 3155 3269 -3 984 238 9 5 chr11 26662630 26662853 -122120619 - MER58A DNA MER1_type 0 224 1 1560 103 9 5 chr11 26663077 26663290 -122120182 - AluSp SINE Alu -14 299 86 184 244 12 12 chr11 26663478 26663564 -122119908 + GA-rich Low_complexity Low_complexity 2 87 0 214 238 20 20 chr11 26664553 26664654 -122118818 + (TA)n Simple_repeat Simple_repeat 2 102 0 1777 171 45 9 chr11 26664920 26665254 -122118218 + MER7A DNA MER2_type 2 345 -1 23 54 0 0 chr11 26667464 26667501 -122115971 + AT_rich Low_complexity Low_complexity 1 37 0 1867 120 41 57 chr11 26668512 26668829 -122114643 + AluJb SINE Alu 1 312 0 2390 104 0 0 chr11 26669836 26670145 -122113327 + AluSc SINE Alu 1 309 0 23 0 0 0 chr11 26674220 26674243 -122109229 + AT_rich Low_complexity Low_complexity 1 23 0 654 341 36 50 chr11 26674301 26674817 -122108655 - L2 LINE L2 -46 3267 2766 214 270 22 67 chr11 26677554 26677643 -122105829 - MER5A DNA MER1_type -98 91 7 21 36 0 0 chr11 26678334 26678362 -122105110 + AT_rich Low_complexity Low_complexity 1 28 0 307 283 51 19 chr11 26678964 26679080 -122104392 - MIR SINE MIR -83 125 13 45 34 0 0 chr11 26680616 26680675 -122102797 + AT_rich Low_complexity Low_complexity 1 59 0 187 160 60 60 chr11 26680752 26680802 -122102670 - L2 LINE L2 0 3313 3264 198 62 0 31 chr11 26681483 26681515 -122101957 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 2043 99 0 0 chr11 26681515 26681768 -122101704 - AluSx SINE Alu -1 316 33 253 289 7 0 chr11 26683179 26683258 -122100214 - MIR SINE MIR -84 124 41 30 0 0 0 chr11 26683622 26683652 -122099820 + AT_rich Low_complexity Low_complexity 1 30 0 1970 131 3 34 chr11 26685994 26686315 -122097157 - AluSq SINE Alu -2 311 1 2294 85 3 16 chr11 26686611 26686917 -122096555 - AluSx SINE Alu -10 302 1 1359 140 44 18 chr11 26687142 26687371 -122096101 + MER46A DNA MER2_type 1 235 -1 2340 93 20 0 chr11 26687595 26687895 -122095577 - AluSx SINE Alu -6 306 1 202 274 59 0 chr11 26688639 26688690 -122094782 - L2 LINE L2 -6 3307 3254 443 261 186 13 chr11 26689152 26689378 -122094094 + MLT1L LTR MaLR 4 268 -347 615 235 55 16 chr11 26689490 26689673 -122093799 + MLT1L LTR MaLR 421 610 -5 679 309 29 63 chr11 26689681 26690173 -122093299 + MLT1J LTR MaLR 29 503 -8 1705 139 105 0 chr11 26690286 26690553 -122092919 + AluJb SINE Alu 1 295 -17 242 250 62 0 chr11 26690748 26690828 -122092644 + L1ME4a LINE L1 5947 6031 -90 389 223 79 102 chr11 26691928 26692143 -122091329 + MLT1K LTR MaLR 379 588 0 341 325 131 57 chr11 26692316 26692950 -122090522 + L2 LINE L2 1963 2643 -671 408 209 137 43 chr11 26693474 26693613 -122089859 + MIR SINE MIR 37 188 -74 368 305 1 11 chr11 26694154 26694264 -122089208 + MIR SINE MIR 49 158 -50 441 264 84 17 chr11 26694439 26694617 -122088855 + MIR SINE MIR 1 190 -72 1057 254 58 30 chr11 26694668 26695097 -122088375 + L1MC4 LINE L1 7588 8028 -14 213 236 139 28 chr11 26696604 26696676 -122086796 + L2 LINE L2 2394 2473 -841 349 347 94 50 chr11 26696727 26697059 -122086413 + L2 LINE L2 2814 3171 -101 1151 142 19 33 chr11 26697059 26697270 -122086202 + MER3 DNA MER1_type 1 208 -1 349 347 94 50 chr11 26697270 26697375 -122086097 + L2 LINE L2 3171 3270 -2 24 32 0 0 chr11 26697710 26697741 -122085731 + AT_rich Low_complexity Low_complexity 1 31 0 476 283 81 39 chr11 26748417 26748851 -122034621 + L1ME4a LINE L1 5588 6091 -30 499 297 108 0 chr11 26748854 26749086 -122034386 + MIR SINE MIR 6 262 0 2210 114 0 10 chr11 26749145 26749443 -122034029 + AluSq SINE Alu 1 295 -18 2396 224 55 32 chr11 26749919 26750487 -122032985 - MLT1E LTR MaLR 0 593 13 2415 105 0 0 chr11 26750624 26750930 -122032542 - AluSq SINE Alu -7 306 1 222 300 12 12 chr11 26751220 26751300 -122032172 + MIR SINE MIR 174 253 -9 234 0 0 0 chr11 26752239 26752265 -122031207 + (TG)n Simple_repeat Simple_repeat 1 26 0 205 309 0 0 chr11 26752352 26752407 -122031065 + L2 LINE L2 3218 3272 0 549 288 103 32 chr11 26752412 26752752 -122030720 - L2 LINE L2 0 3313 2950 358 264 141 62 chr11 26752990 26753217 -122030255 + HAL1 LINE L1 614 858 -1649 24 67 0 0 chr11 26754357 26754402 -122029070 + AT_rich Low_complexity Low_complexity 1 45 0 235 274 82 0 chr11 26754816 26754889 -122028583 - MIR SINE MIR -137 125 47 1076 200 76 0 chr11 26755255 26755465 -122028007 - Charlie1a DNA MER1_type -1229 226 1 269 356 55 0 chr11 26755535 26755681 -122027791 + MIR SINE MIR 108 261 -1 279 54 0 0 chr11 26755853 26755890 -122027582 + (CTG)n Simple_repeat Simple_repeat 1 37 0 390 339 56 22 chr11 26756308 26756488 -122026984 + LTR33 LTR ERVL 2 187 -334 544 268 49 45 chr11 26756522 26756787 -122026685 + LTR33 LTR ERVL 256 521 0 305 246 27 27 chr11 26756833 26756943 -122026529 + MER113 DNA MER1_type? 8 117 -404 2415 110 0 0 chr11 26756978 26757288 -122026184 + AluSq SINE Alu 1 310 -3 195 100 0 0 chr11 26757288 26757318 -122026154 + (GA)n Simple_repeat Simple_repeat 1 30 0 2013 166 61 0 chr11 26757357 26757701 -122025771 + MLT1A1 LTR MaLR 1 365 0 778 232 37 42 chr11 26757767 26758008 -122025464 + MIR SINE MIR 2 241 -21 2377 90 3 7 chr11 26758025 26758325 -122025147 - AluSx SINE Alu -13 299 1 541 240 29 78 chr11 26758403 26758607 -122024865 + MER113 DNA MER1_type? 323 516 -5 772 228 27 5 chr11 26758926 26759110 -122024362 + MER5A DNA MER1_type 2 189 0 449 264 31 37 chr11 26759180 26759343 -122024129 - MIR SINE MIR -12 250 89 1914 163 0 0 chr11 26759450 26759751 -122023721 - AluJb SINE Alu -11 301 1 799 207 18 12 chr11 26759754 26759918 -122023554 + MER3 DNA MER1_type 14 131 -78 680 150 82 48 chr11 26760538 26760685 -122022787 - MER58C DNA MER1_type -1 214 63 309 304 44 39 chr11 26760745 26760926 -122022546 - MER5A DNA MER1_type -1 188 7 420 208 10 30 chr11 26760930 26761031 -122022441 - MIR3 SINE MIR -19 189 91 311 276 0 0 chr11 26761178 26761254 -122022218 + MLT1L LTR MaLR 540 615 0 394 328 23 17 chr11 26761409 26761583 -122021889 + MIR3 SINE MIR 3 177 -31 2043 153 29 6 chr11 26763339 26763686 -122019786 + THE1A LTR MaLR 1 355 0 436 354 31 9 chr11 26763688 26763917 -122019555 - MIR SINE MIR -16 246 13 43658 36 21 1 chr11 26764473 26770502 -122012970 - L1PA2 LINE L1 0 6155 4 331 331 0 32 chr11 26770505 26770659 -122012813 - MIR SINE MIR -86 176 28 2514 75 14 104 chr11 26771002 26771416 -122012056 - MER51B LTR ERV1 0 377 1 623 301 25 13 chr11 26772308 26772544 -122010928 + MIR SINE MIR 7 245 -17 187 286 71 0 chr11 26772594 26772650 -122010822 + MIR SINE MIR 200 259 -3 345 331 12 41 chr11 26772650 26772822 -122010650 - MIR3 SINE MIR -3 205 39 636 271 59 0 chr11 26772987 26773211 -122010261 + MIR SINE MIR 21 256 -6 245 262 90 41 chr11 26773743 26773865 -122009607 - MIR SINE MIR -115 147 20 753 253 18 31 chr11 26775113 26775342 -122008130 + MIR SINE MIR 12 237 -25 420 284 97 7 chr11 26775515 26775670 -122007802 + MIR SINE MIR 17 185 -77 243 0 0 0 chr11 26775682 26775709 -122007763 + (TG)n Simple_repeat Simple_repeat 2 28 0 201 213 21 0 chr11 26775717 26775764 -122007708 + (TA)n Simple_repeat Simple_repeat 1 48 0 290 329 36 21 chr11 26776135 26776275 -122007197 + L2 LINE L2 3171 3312 -1 339 253 11 0 chr11 26776937 26777032 -122006440 + MIR SINE MIR 58 153 -109 811 255 100 4 chr11 26777071 26777302 -122006170 - MIR SINE MIR -5 257 5 212 253 169 36 chr11 26777511 26777677 -122005795 + MIR SINE MIR 21 208 -54 193 258 135 22 chr11 26778552 26778641 -122004831 - MIR SINE MIR 0 262 164 1735 187 7 3 chr11 26778663 26778962 -122004510 - AluJo SINE Alu -12 300 1 233 336 132 43 chr11 26779175 26779410 -122004062 - L2 LINE L2 0 3272 3017 230 200 0 50 chr11 26779505 26779585 -122003887 + A-rich Low_complexity Low_complexity 3 78 0 2378 92 0 7 chr11 26779707 26780010 -122003462 + AluSq SINE Alu 1 301 -12 509 265 99 99 chr11 26780783 26781175 -122002297 - MLT1L LTR MaLR -8 607 216 276 228 0 3 chr11 26781165 26781232 -122002240 - MLT1J LTR MaLR -313 163 72 * 294 179 18 0 chr11 26781189 26781245 -122002227 - LTR67 LTR ERVL -400 157 101 2544 149 17 2 chr11 26782166 26782576 -122000896 - MSTB1 LTR MaLR -2 430 15 2109 205 37 60 chr11 26783063 26783132 -122000340 - MLT1D LTR MaLR 0 505 436 1630 151 92 0 chr11 26783132 26783403 -122000069 + AluSx SINE Alu 1 296 -16 2109 205 37 60 chr11 26783403 26783850 -121999622 - MLT1D LTR MaLR -69 436 1 647 251 28 11 chr11 26784003 26784182 -121999290 + MIR SINE MIR 78 259 -3 441 0 0 0 chr11 26784803 26784852 -121998620 + (TG)n Simple_repeat Simple_repeat 2 50 0 246 160 0 0 chr11 26784858 26784908 -121998564 + GA-rich Low_complexity Low_complexity 2 51 0 336 315 104 27 chr11 26785567 26785789 -121997683 - MIR SINE MIR -7 255 17 486 307 135 8 chr11 26786866 26787133 -121996339 - L1MC/D LINE L1 -2010 5798 5498 24 32 0 0 chr11 26787756 26787787 -121995685 + AT_rich Low_complexity Low_complexity 1 31 0 224 178 0 44 chr11 26788291 26788336 -121995136 + polypurine Low_complexity Low_complexity 3 45 0 29 0 0 0 chr11 26789111 26789140 -121994332 + AT_rich Low_complexity Low_complexity 1 29 0 1878 131 11 14 chr11 26789404 26789706 -121993766 + AluSx SINE Alu 1 301 0 335 211 28 0 chr11 26790596 26790667 -121992805 - MIR SINE MIR -111 151 79 1729 295 132 21 chr11 26791131 26791951 -121991521 - L2 LINE L2 -407 2907 1983 2383 90 0 7 chr11 26791951 26792261 -121991211 + AluSg SINE Alu 1 308 -2 1729 295 132 21 chr11 26792261 26792311 -121991161 - L2 LINE L2 -1331 1983 1940 835 50 0 0 chr11 26792760 26792861 -121990611 - L1PB1 LINE L1 0 6151 6051 2066 127 6 22 chr11 26793103 26793419 -121990053 + AluSp SINE Alu 1 311 -2 231 36 0 0 chr11 26793466 26793494 -121989978 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 1018 289 71 44 chr11 26794038 26794768 -121988704 - L2 LINE L2 0 3313 2568 629 277 77 0 chr11 26794978 26795173 -121988299 + MER63A DNA MER1_type 1 210 0 1074 265 93 52 chr11 26795796 26796464 -121987008 + L1ME3A LINE L1 4960 5565 -605 713 216 57 101 chr11 26796464 26796691 -121986781 - MER20 DNA MER1_type -2 217 1 1074 265 93 52 chr11 26796691 26797095 -121986377 + L1ME3A LINE L1 5565 5951 -219 271 255 5 0 chr11 26797430 26797507 -121985965 + MIR SINE MIR 78 141 -67 309 263 102 36 chr11 26797525 26797662 -121985810 - MER117 DNA MER1_type 0 197 52 187 300 78 0 chr11 26798573 26798663 -121984809 - MIR3 SINE MIR -11 197 101 2207 124 0 9 chr11 26798745 26799060 -121984412 - AluSx SINE Alu 0 312 1 533 247 52 26 chr11 26799127 26799281 -121984191 - MIR SINE MIR -16 246 89 257 267 137 43 chr11 26799562 26799723 -121983749 + MER117 DNA MER1_type 17 192 -5 259 224 212 12 chr11 26799791 26799876 -121983596 + MER5A DNA MER1_type 8 109 -80 23 0 0 0 chr11 26799942 26799965 -121983507 + AT_rich Low_complexity Low_complexity 1 23 0 948 259 40 27 chr11 26800052 26800353 -121983119 - L1ME1 LINE L1 -4 6162 5858 858 90 14 14 chr11 26800369 26800513 -121982959 + (TTTC)n Simple_repeat Simple_repeat 1 144 0 2077 130 7 0 chr11 26800799 26801098 -121982374 + AluSx SINE Alu 3 303 -9 365 58 19 0 chr11 26801099 26801151 -121982321 + (AATAG)n Simple_repeat Simple_repeat 2 54 0 296 353 42 0 chr11 26801463 26801595 -121981877 - MIR SINE MIR -64 144 21 2149 104 4 0 chr11 26802361 26802668 -121980804 + AluSx SINE Alu 1 308 0 312 339 51 8 chr11 26803333 26803451 -121980021 - MIR SINE MIR -70 138 16 189 315 70 70 chr11 26803855 26804112 -121979360 - L2 LINE L2 -23 3290 3034 248 354 38 0 chr11 26805382 26805461 -121978011 + MIR SINE MIR 17 98 -110 557 256 139 6 chr11 26805539 26805711 -121977761 - MIR SINE MIR -49 213 19 4537 30 2 0 chr11 26805863 26806515 -121976957 + L1PA4 LINE L1 4861 5514 -641 1494 28 0 39 chr11 26806616 26806795 -121976677 + L1PA4 LINE L1 5981 6152 -3 1885 165 0 7 chr11 26807073 26807370 -121976102 - AluJo SINE Alu -17 295 1 263 267 267 7 chr11 26807379 26807514 -121975958 - MIR SINE MIR -14 248 79 417 273 58 36 chr11 26808339 26808478 -121974994 - MIR3 SINE MIR -51 157 16 1584 142 22 36 chr11 26808591 26808866 -121974606 - L1PA16 LINE L1 -2 6164 5894 601 281 72 25 chr11 26808959 26809194 -121974278 + MIR SINE MIR 14 259 -3 189 107 0 0 chr11 26809259 26809287 -121974185 + MIR SINE MIR 114 141 -121 334 335 95 92 chr11 26809365 26809723 -121973749 - L2 LINE L2 0 3272 2914 2002 236 60 38 chr11 26809743 26810356 -121973116 - HsTC2 DNA Tc2 0 1898 1272 194 250 0 0 chr11 26810658 26810706 -121972766 - L2 LINE L2 -615 2699 2652 787 11 0 0 chr11 26811089 26811183 -121972289 - L1P1 LINE L1 -724 5431 5338 3795 27 0 0 chr11 26811183 26811641 -121971831 + L1PA4 LINE L1 5724 6181 0 447 216 0 10 chr11 26811815 26811912 -121971560 - LTR16B LTR ERVL 0 464 369 5657 0 40 0 chr11 26811912 26812129 -121971343 + L1PA16 LINE L1 4959 5017 -1149 5657 144 21 3 chr11 26812129 26813307 -121970165 + L1PA16 LINE L1 4959 6153 -13 5657 0 40 0 chr11 26813307 26813741 -121969731 + L1PA16 LINE L1 5017 6153 -13 2741 148 62 27 chr11 26813308 26813796 -121969676 + L1MA6 LINE L1 5495 5999 -292 * 1771 109 29 0 chr11 26813898 26814172 -121969300 + L1MA6 LINE L1 6019 6300 0 782 351 30 15 chr11 26814188 26814524 -121968948 - LTR16B LTR ERVL -80 384 44 2250 113 23 0 chr11 26814557 26814858 -121968614 - AluJb SINE Alu -4 308 1 525 240 103 26 chr11 26815081 26815275 -121968197 + MLT1H1 LTR MaLR 10 259 -290 1539 242 37 5 chr11 26815281 26815686 -121967786 + L1MD3 LINE L1 7568 7985 -10 797 233 49 22 chr11 26815789 26816012 -121967460 + MLT1H1 LTR MaLR 327 555 0 425 186 32 57 chr11 26816334 26816458 -121967014 - MER103 DNA DNA -43 123 3 1895 145 10 10 chr11 26816460 26816764 -121966708 - AluJb SINE Alu -8 304 1 206 357 0 12 chr11 26816918 26817002 -121966470 + L3 LINE CR1 1494 1576 -1 2037 140 3 7 chr11 26817098 26817406 -121966066 - AluSx SINE Alu 0 312 6 2328 103 0 0 chr11 26817851 26818151 -121965321 - AluSc SINE Alu -9 300 1 572 268 101 31 chr11 26818438 26818642 -121964830 + MIR SINE MIR 15 238 -24 1315 218 114 61 chr11 26818642 26819018 -121964454 - MSTD LTR MaLR 0 396 1 572 268 101 31 chr11 26819018 26819041 -121964431 + MIR SINE MIR 238 258 -4 515 347 59 9 chr11 26819320 26819542 -121963930 + MIR SINE MIR 20 252 -10 327 229 237 0 chr11 26820284 26820402 -121963070 + MIR SINE MIR 117 262 0 1590 158 53 3 chr11 26820451 26820735 -121962737 - L1MD3 LINE L1 -973 7022 6725 1009 234 120 58 chr11 26821053 26821614 -121961858 - MLT1H1 LTR MaLR -2 553 1 2275 105 3 3 chr11 26822256 26822561 -121960911 + AluSq SINE Alu 1 305 -8 198 128 0 0 chr11 26822883 26822922 -121960550 + (CA)n Simple_repeat Simple_repeat 2 40 0 927 105 0 23 chr11 26823289 26823422 -121960050 + AluY SINE Alu 1 130 -181 1102 119 57 23 chr11 26824134 26824311 -121959161 + MLT2A1 LTR ERVL 180 362 -82 796 43 0 0 chr11 26824316 26824408 -121959064 + L1P LINE L1 7 98 -6048 * 14845 47 6 0 chr11 26824406 26826208 -121957264 + L1P LINE L1 623 2435 -3711 22 0 0 0 chr11 26826250 26826272 -121957200 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr11 26826797 26826835 -121956637 + AT_rich Low_complexity Low_complexity 1 38 0 1823 154 48 3 chr11 26826982 26827275 -121956197 + AluJb SINE Alu 1 306 -6 198 284 30 30 chr11 26827612 26827679 -121955793 - MIR3 SINE MIR -37 171 105 2237 204 68 29 chr11 26828285 26828771 -121954701 - MLT1D LTR MaLR 0 505 1 205 383 0 0 chr11 26829035 26829116 -121954356 - L2 LINE L2 -4 3268 3188 203 316 59 59 chr11 26829138 26829274 -121954198 + L2 LINE L2 3167 3302 -11 1134 211 14 14 chr11 26829332 26829555 -121953917 + MER58A DNA MER1_type 2 224 0 245 348 79 42 chr11 26830410 26830764 -121952708 - L2 LINE L2 -601 2713 2347 2705 124 86 0 chr11 26830818 26831212 -121952260 + MSTA LTR MaLR 1 428 0 8728 170 22 24 chr11 26831212 26832865 -121950607 + MSTA-int LTR MaLR 1 1651 0 2706 118 57 0 chr11 26832865 26833270 -121950202 + MSTA LTR MaLR 1 428 0 287 198 12 37 chr11 26833750 26833831 -121949641 + CT-rich Low_complexity Low_complexity 1 79 0 3597 157 52 19 chr11 26834182 26834876 -121948596 - L1MC1 LINE L1 0 6333 5617 48 67 0 0 chr11 26834982 26835072 -121948400 + AT_rich Low_complexity Low_complexity 1 90 0 3391 56 20 2 chr11 26835080 26835524 -121947948 - L1PA8 LINE L1 -2 6170 5719 1482 212 126 44 chr11 26835907 26836425 -121947047 - L1ME1 LINE L1 -4 6162 5603 1484 264 78 69 chr11 26836426 26836484 -121946988 - L1ME LINE L1 -4378 1702 1646 1672 206 0 3 chr11 26836484 26836775 -121946697 + AluJo SINE Alu 2 291 -21 1484 264 78 69 chr11 26836775 26838040 -121945432 - L1ME LINE L1 -4434 1646 388 2134 97 48 0 chr11 26838040 26838330 -121945142 - AluSx SINE Alu -8 304 1 1484 264 78 69 chr11 26838330 26838625 -121944847 - L1ME LINE L1 -5692 388 97 2263 98 3 0 chr11 26838657 26838963 -121944509 - AluSp SINE Alu -6 307 1 2177 105 13 3 chr11 26838965 26839270 -121944202 - AluSq SINE Alu -3 310 3 2939 269 47 37 chr11 26839276 26841082 -121942390 - L1M4c LINE L1 -4058 3111 1621 195 360 40 0 chr11 26842452 26842527 -121940945 - L2 LINE L2 0 3313 3236 467 300 60 20 chr11 26842905 26843080 -121940392 + MER5A DNA MER1_type 2 184 -5 323 306 75 15 chr11 26843258 26843392 -121940080 + MIR SINE MIR 1 142 -120 452 200 206 17 chr11 26843394 26843569 -121939903 + MER113 DNA MER1_type? 1 208 -313 21 82 0 0 chr11 26843569 26843618 -121939854 + AT_rich Low_complexity Low_complexity 1 49 0 186 43 0 0 chr11 26844691 26844714 -121938758 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1888 147 27 21 chr11 26845142 26845725 -121937747 - L1MCa LINE L1 -4499 1927 1252 5309 135 185 8 chr11 26845726 26846776 -121936696 - MER11B LTR ERVK 0 1236 1 1703 146 41 39 chr11 26846784 26847146 -121936326 - L1MCa LINE L1 -5182 1244 882 1361 205 3 13 chr11 26847145 26847755 -121935717 - L1 LINE L1 -1230 4804 4073 * 2564 262 120 30 chr11 26847751 26849014 -121934458 - L1 LINE L1 -3793 2241 1328 225 0 0 0 chr11 26849014 26849039 -121934433 + (TTG)n Simple_repeat Simple_repeat 2 26 0 2564 262 120 30 chr11 26849039 26850169 -121933303 - L1 LINE L1 -4706 1328 300 1576 259 10 13 chr11 26850187 26850580 -121932892 - L1 LINE L1 -5551 404 13 297 287 10 30 chr11 26850589 26850690 -121932782 - L2 LINE L2 -249 3023 2925 460 343 117 51 chr11 26851518 26852151 -121931321 + L2 LINE L2 2200 2874 -440 190 318 0 30 chr11 26852165 26852224 -121931248 - MIR SINE MIR -4 258 202 378 272 30 49 chr11 26852224 26852405 -121931067 + MER5A DNA MER1_type 1 189 0 369 275 163 31 chr11 26852405 26852564 -121930908 - MIR SINE MIR -55 207 28 360 357 174 22 chr11 26852599 26852921 -121930551 + L2 LINE L2 2901 3271 -1 2152 127 0 3 chr11 26853838 26854146 -121929326 + AluSq SINE Alu 1 307 -6 2564 55 3 0 chr11 26855210 26855518 -121927954 + AluY SINE Alu 2 310 -1 379 327 102 6 chr11 26855581 26855758 -121927714 - MIR SINE MIR -29 233 41 180 327 19 37 chr11 26856427 26856534 -121926938 - L3 LINE CR1 -585 992 888 238 294 44 0 chr11 26856987 26857055 -121926417 - MIR3 SINE MIR -49 159 89 348 293 13 0 chr11 26857121 26857196 -121926276 + L2 LINE L2 3186 3261 -11 1472 174 10 30 chr11 26857359 26857658 -121925814 + AluSx SINE Alu 1 293 -19 293 315 54 44 chr11 26859700 26859903 -121923569 - MIR SINE MIR -1 261 57 1347 245 100 59 chr11 26860518 26861351 -121922121 + L2 LINE L2 2458 3313 0 32 0 0 0 chr11 26861568 26861600 -121921872 + AT_rich Low_complexity Low_complexity 1 32 0 926 284 152 14 chr11 26861661 26862009 -121921463 + MLT1K LTR MaLR 71 466 -122 45 62 0 0 chr11 26862553 26862633 -121920839 + AT_rich Low_complexity Low_complexity 1 80 0 213 341 72 30 chr11 26863031 26863198 -121920274 - L2 LINE L2 -429 2885 2712 300 298 60 42 chr11 26864232 26864400 -121919072 + MIR SINE MIR 46 216 -46 775 289 145 13 chr11 26865258 26865569 -121917903 + MLT1H LTR MaLR 3 354 -195 349 272 79 0 chr11 26865605 26865698 -121917774 + MLT1H LTR MaLR 425 530 -19 3848 68 0 4 chr11 26865698 26866197 -121917275 - L1PA7 LINE L1 -1 6153 5657 349 272 79 0 chr11 26866197 26866217 -121917255 + MLT1H LTR MaLR 530 547 -2 192 40 0 0 chr11 26866394 26866419 -121917053 + (TTG)n Simple_repeat Simple_repeat 2 26 0 1309 196 4 19 chr11 26867041 26867307 -121916165 - L1MB5 LINE L1 -8 6166 5905 3935 235 26 15 chr11 26867308 26868355 -121915117 - L1MB5 LINE L1 -1029 5117 4060 5931 112 7 0 chr11 26868360 26869730 -121913742 - L1PA15 LINE L1 0 6165 4788 933 271 104 41 chr11 26869955 26870472 -121913000 - L1MC5 LINE L1 -431 7530 6981 352 138 15 0 chr11 26870497 26870562 -121912910 + L1MB5 LINE L1 6047 6112 -62 299 73 13 280 chr11 26870576 26870680 -121912792 + L1MB5 LINE L1 6065 6119 -55 2318 119 30 0 chr11 26870680 26871050 -121912422 - L1PA16 LINE L1 -9 6157 5777 299 73 13 280 chr11 26871050 26871095 -121912377 + L1MB5 LINE L1 6119 6174 0 1006 332 46 32 chr11 26871414 26872173 -121911299 - L2 LINE L2 -137 3176 2403 275 374 23 8 chr11 26872722 26872853 -121910619 + MIR SINE MIR 28 160 -102 183 366 98 16 chr11 26873094 26873217 -121910255 + L2 LINE L2 3137 3269 -3 427 179 141 0 chr11 26874373 26874451 -121909021 + 5S rRNA rRNA 2 90 -31 20517 63 4 3 chr11 26874820 26877501 -121905971 - L1P LINE L1 -2885 3261 578 237 33 0 0 chr11 26878302 26878332 -121905140 + (CAA)n Simple_repeat Simple_repeat 1 30 0 245 313 127 52 chr11 26878628 26878989 -121904483 + HAL1b LINE L1 22 445 -903 1969 115 25 7 chr11 26878989 26879275 -121904197 - AluSg SINE Alu -19 291 1 245 313 127 52 chr11 26879275 26879495 -121903977 + HAL1b LINE L1 445 647 -701 1356 194 103 6 chr11 26879956 26880296 -121903176 + L1MA9 LINE L1 5940 6312 0 24 0 0 0 chr11 26880296 26880320 -121903152 + AT_rich Low_complexity Low_complexity 1 24 0 219 248 179 43 chr11 26880945 26881062 -121902410 + MIR SINE MIR 116 248 -14 23 68 0 0 chr11 26883154 26883198 -121900274 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr11 26884120 26884142 -121899330 + AT_rich Low_complexity Low_complexity 1 22 0 688 193 32 80 chr11 26885916 26886103 -121897369 + MER5B DNA MER1_type 1 178 0 182 93 0 47 chr11 26886237 26886280 -121897192 + (CAAAAA)n Simple_repeat Simple_repeat 5 45 0 446 262 88 47 chr11 26886885 26887078 -121896394 + MIR SINE MIR 2 213 -49 663 247 101 32 chr11 26887334 26887642 -121895830 - MER102a DNA MER1_type -1 329 1 1283 195 161 43 chr11 26888064 26888413 -121895059 + MLT1B LTR MaLR 1 390 0 235 307 0 40 chr11 26889221 26889296 -121894176 + L2 LINE L2 3238 3309 -4 3106 136 153 47 chr11 26890996 26892007 -121891465 + MER11A LTR ERVK 1 1266 0 830 205 46 5 chr11 26892868 26893063 -121890409 + MER3 DNA MER1_type 2 204 -5 382 266 165 27 chr11 26893078 26893266 -121890206 + MIR SINE MIR 20 233 -29 282 361 207 5 chr11 26893284 26893492 -121889980 - MIR SINE MIR 0 262 13 14512 138 22 6 chr11 26894571 26896611 -121886861 - Tigger1 DNA MER2_type -1 2417 331 369 0 0 0 chr11 26896611 26896652 -121886820 + (GA)n Simple_repeat Simple_repeat 2 42 0 14512 138 22 6 chr11 26896652 26896989 -121886483 - Tigger1 DNA MER2_type -2087 331 1 652 335 51 11 chr11 26897817 26898172 -121885300 - LTR16C LTR ERVL -9 482 114 286 346 138 35 chr11 26898368 26898825 -121884647 - L2 LINE L2 -1 3312 2809 762 253 63 18 chr11 26899435 26899656 -121883816 - MIR SINE MIR 0 262 32 191 301 126 44 chr11 26899722 26899928 -121883544 - L3 LINE CR1 -6 1571 1349 1389 111 0 0 chr11 26899969 26900168 -121883304 + MSTA LTR MaLR 2 200 -228 5066 59 0 2 chr11 26900168 26900921 -121882551 + L1PA6 LINE L1 5171 5922 -232 470 308 76 25 chr11 26901098 26901296 -121882176 + MIR SINE MIR 18 225 -37 697 305 41 2 chr11 26901309 26901575 -121881897 + L2 LINE L2 1147 1481 -1833 680 294 17 6 chr11 26901574 26901754 -121881718 + L2 LINE L2 3132 3313 0 * 349 342 52 16 chr11 26901957 26902150 -121881322 + MIR SINE MIR 40 239 -23 576 297 103 19 chr11 26902176 26902439 -121881033 - L2 LINE L2 -656 2658 2374 333 271 163 36 chr11 26903230 26903451 -121880021 - MIR SINE MIR -8 254 6 1469 47 0 0 chr11 26903541 26903731 -121879741 - L1PA7 LINE L1 -175 5979 5790 1087 84 19 0 chr11 26903731 26903882 -121879590 + L1PA7 LINE L1 5995 6152 -2 5634 225 47 21 chr11 26904595 26907202 -121876270 + L1PB3 LINE L1 6 1737 -5126 1315 127 52 13 chr11 26907200 26907429 -121876043 + THE1-int LTR MaLR 1044 1281 -299 * 2744 149 34 2 chr11 26907423 26907918 -121875554 - MSTA-int LTR MaLR -1140 511 1 1672 138 138 46 chr11 26907918 26908136 -121875336 - MSTA LTR MaLR 0 428 231 13494 45 7 1 chr11 26908136 26910599 -121872873 - L1PA5 LINE L1 -3 6151 3680 1672 138 138 46 chr11 26910599 26910772 -121872700 - MSTA LTR MaLR -197 231 1 3474 221 19 34 chr11 26910775 26910814 -121872658 + L1PB3 LINE L1 2518 2556 -4306 2216 106 0 26 chr11 26910814 26911116 -121872356 - AluY SINE Alu -17 294 1 3474 221 19 34 chr11 26911116 26912275 -121871197 + L1PB3 LINE L1 2556 3696 -3166 5628 165 24 47 chr11 26912287 26914427 -121869045 + L1PB3 LINE L1 4572 6643 -227 1977 103 15 94 chr11 26914427 26914756 -121868716 - AluSx SINE Alu -9 303 1 5628 165 24 47 chr11 26914756 26914976 -121868496 + L1PB3 LINE L1 6643 6867 -3 447 293 0 0 chr11 26915145 26915251 -121868221 - MIR SINE MIR -98 164 59 213 39 0 0 chr11 26915511 26915537 -121867935 + (T)n Simple_repeat Simple_repeat 1 26 0 243 0 0 0 chr11 26915959 26915986 -121867486 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 22 0 0 0 chr11 26916443 26916465 -121867007 + AT_rich Low_complexity Low_complexity 1 22 0 2610 161 118 53 chr11 26916975 26917650 -121865822 + LTR8A LTR ERV1 9 727 0 2229 86 3 17 chr11 26919349 26919651 -121863821 + AluSc SINE Alu 2 299 -10 183 288 82 14 chr11 26919788 26919861 -121863611 + L3 LINE CR1 1287 1364 -213 21 0 0 0 chr11 26921184 26921205 -121862267 + AT_rich Low_complexity Low_complexity 1 21 0 2544 154 19 2 chr11 26921717 26922138 -121861334 - MSTA LTR MaLR 0 428 1 8420 168 26 42 chr11 26922138 26923815 -121859657 - MSTA-int LTR MaLR 0 1651 1 1623 149 23 0 chr11 26923815 26924077 -121859395 - MSTA LTR MaLR 0 428 161 24 0 0 0 chr11 26924205 26924229 -121859243 + AT_rich Low_complexity Low_complexity 1 24 0 2262 90 3 3 chr11 26925123 26925423 -121858049 - AluSc SINE Alu -9 300 1 2354 104 0 0 chr11 26925653 26925951 -121857521 + AluSg SINE Alu 1 298 -12 313 186 43 29 chr11 26926037 26926107 -121857365 - MIR SINE MIR -67 195 125 204 158 0 0 chr11 26926348 26926386 -121857086 + (TAA)n Simple_repeat Simple_repeat 1 38 0 396 40 0 0 chr11 26927969 26928019 -121855453 + (CA)n Simple_repeat Simple_repeat 1 50 0 253 351 0 13 chr11 26928035 26928112 -121855360 - L2 LINE L2 -42 3230 3155 700 250 75 0 chr11 26928673 26928873 -121854599 - MER58C DNA MER1_type 0 215 1 269 314 39 26 chr11 26929615 26929771 -121853701 - L2 LINE L2 -404 2910 2753 7912 187 36 1 chr11 26930122 26932444 -121851028 + L1MA9 LINE L1 2849 5246 -900 2376 130 32 81 chr11 26932566 26932660 -121850812 + L1MA9 LINE L1 5235 5332 -959 735 223 0 0 chr11 26932660 26932790 -121850682 + FLAM_A SINE Alu 1 130 -3 2376 130 32 81 chr11 26932790 26933082 -121850390 + L1MA9 LINE L1 5332 5606 -685 3151 27 11 0 chr11 26933082 26933458 -121850014 + L1PA2 LINE L1 5776 6155 0 2376 130 32 81 chr11 26933458 26933633 -121849839 + L1MA9 LINE L1 5606 5788 -503 419 53 40 13 chr11 26933641 26933717 -121849755 + (TCTA)n Simple_repeat Simple_repeat 1 78 0 234 0 0 0 chr11 26933818 26933844 -121849628 + (CA)n Simple_repeat Simple_repeat 2 27 0 2744 136 48 16 chr11 26933847 26934346 -121849126 + L1MA9 LINE L1 5798 6312 0 240 86 0 0 chr11 26934405 26934440 -121849032 + (TAG)n Simple_repeat Simple_repeat 1 35 0 408 298 86 7 chr11 26934445 26934596 -121848876 - MIR SINE MIR 0 262 100 22 35 0 0 chr11 26934643 26934672 -121848800 + AT_rich Low_complexity Low_complexity 1 29 0 457 254 5 92 chr11 26934977 26935053 -121848419 - L1ME LINE L1 -450 5671 5590 2766 71 5 3 chr11 26935053 26935421 -121848051 - L1PA8 LINE L1 -15 6157 5789 457 254 5 92 chr11 26935421 26935529 -121847943 - L1ME LINE L1 -531 5590 5503 23 54 0 0 chr11 26935560 26935597 -121847875 + AT_rich Low_complexity Low_complexity 1 37 0 4083 92 2 5 chr11 26935826 26936416 -121847056 - L1PA8A LINE L1 -30 6101 5514 244 357 6 51 chr11 26936759 26936916 -121846556 - MIR3 SINE MIR -21 187 38 10330 68 10 23 chr11 26937256 26939498 -121843974 + L1PA7 LINE L1 3921 6127 -27 288 107 0 18 chr11 26939495 26939551 -121843921 + L1PA10 LINE L1 6114 6168 0 * 2618 52 0 0 chr11 26939559 26939866 -121843606 + AluY SINE Alu 5 311 0 21 82 0 0 chr11 26939987 26940036 -121843436 + AT_rich Low_complexity Low_complexity 1 49 0 26 50 0 0 chr11 26940153 26940193 -121843279 + AT_rich Low_complexity Low_complexity 1 40 0 1568 209 38 3 chr11 26940275 26940567 -121842905 + AluJo SINE Alu 1 302 -10 201 74 0 0 chr11 26941715 26941742 -121841730 + (A)n Simple_repeat Simple_repeat 1 27 0 2260 133 34 43 chr11 26943271 26943444 -121840028 - L1M2 LINE L1 -588 5703 5530 1977 125 63 41 chr11 26943444 26943811 -121839661 - THE1C LTR MaLR 0 375 1 2260 133 34 43 chr11 26943811 26944275 -121839197 - L1M2 LINE L1 -761 5530 5066 2597 183 55 7 chr11 26944275 26944354 -121839118 + L1MA9 LINE L1 5692 5766 -546 285 89 0 0 chr11 26944354 26944399 -121839073 + (TG)n Simple_repeat Simple_repeat 2 46 0 2597 183 55 7 chr11 26944399 26944889 -121838583 + L1MA9 LINE L1 5766 6299 -13 12358 157 28 40 chr11 26944892 26948719 -121834753 - L1PA13 LINE L1 -14 6800 3030 1515 58 85 123 chr11 26949012 26949305 -121834167 + AluY SINE Alu 1 282 -29 2657 40 0 3 chr11 26949305 26949627 -121833845 + L1PA5 LINE L1 5826 6146 -8 2506 174 21 46 chr11 26950048 26950616 -121832856 + MER41C LTR ERV1 1 554 0 611 150 48 66 chr11 26950800 26950967 -121832505 + MER4C LTR ERV1 1 164 -301 383 249 92 0 chr11 26950960 26951158 -121832314 + MER4C LTR ERV1 149 241 -224 * 11227 189 52 11 chr11 26951275 26953989 -121829483 - L1PA13 LINE L1 -3939 2858 18 211 339 32 24 chr11 26954116 26954240 -121829232 - MIR SINE MIR -87 175 51 226 118 0 0 chr11 26954252 26954286 -121829186 + MER115 DNA AcHobo 521 554 -139 1555 266 52 78 chr11 26954719 26955340 -121828132 + MER115 DNA AcHobo 2 604 -89 673 228 79 40 chr11 26955340 26955542 -121827930 + MER63A DNA MER1_type 1 210 0 1555 266 52 78 chr11 26955542 26955627 -121827845 + MER115 DNA AcHobo 604 690 -3 2411 104 3 0 chr11 26955658 26955967 -121827505 + AluSp SINE Alu 4 313 0 291 267 311 7 chr11 26956021 26956156 -121827316 + MIR SINE MIR 78 253 -9 714 309 55 36 chr11 26957384 26957549 -121825923 - MLT1I LTR MaLR 0 409 248 2039 209 41 7 chr11 26957549 26957961 -121825511 - MSTB LTR MaLR 0 426 1 714 309 55 36 chr11 26957961 26958180 -121825292 - MLT1I LTR MaLR -161 248 18 1944 91 8 4 chr11 26958298 26958552 -121824920 + AluSg SINE Alu 49 303 -7 586 217 14 7 chr11 26960754 26960897 -121822575 + L1ME2 LINE L1 44 187 -6209 240 313 0 0 chr11 26960908 26960972 -121822500 + L1ME2 LINE L1 252 315 -6081 * 1116 246 19 0 chr11 26960968 26961281 -121822191 + L1ME2 LINE L1 4665 4983 -1232 712 133 165 0 chr11 26961291 26961449 -121822023 + MER46B DNA MER2_type 1 59 -177 544 246 38 43 chr11 26961454 26961741 -121821731 + L1ME2 LINE L1 5190 5483 -746 1687 152 35 126 chr11 26961741 26962194 -121821278 + MSTC LTR MaLR 17 428 0 1796 229 108 29 chr11 26962194 26962826 -121820646 + L1ME2 LINE L1 5472 6153 -80 475 200 30 85 chr11 26962754 26962919 -121820553 + L1MA10 LINE L1 6244 6399 -4 * 29 0 0 0 chr11 26963049 26963078 -121820394 + AT_rich Low_complexity Low_complexity 1 29 0 3474 33 2 5 chr11 26963078 26963502 -121819970 - L1PA5 LINE L1 -8 6146 5724 40897 33 23 1 chr11 26963502 26969519 -121813953 - L1PA2 LINE L1 -3 6152 6 254 32 0 0 chr11 26969527 26969558 -121813914 - L1PA5 LINE L1 -422 5732 5702 21 36 0 0 chr11 26970227 26970255 -121813217 + AT_rich Low_complexity Low_complexity 1 28 0 478 255 90 21 chr11 26971011 26971301 -121812171 - HsTC2 DNA Tc2 -6 1892 1583 399 217 0 0 chr11 26971319 26971402 -121812070 - HsTC2 DNA Tc2 -544 1354 1272 528 249 11 6 chr11 26971402 26971579 -121811893 + CT-rich Low_complexity Low_complexity 1 178 0 1325 276 97 0 chr11 26971601 26972245 -121811227 - HsTC2 DNA Tc2 -1177 721 5 549 318 32 37 chr11 26972262 26972479 -121810993 - MIR SINE MIR -40 222 7 411 320 142 45 chr11 26973296 26973543 -121809929 - L3 LINE CR1 -1 1576 1306 2031 126 11 0 chr11 26974652 26974937 -121808535 - AluSg SINE Alu -22 288 1 326 254 0 0 chr11 26975024 26975087 -121808385 - L2 LINE L2 -1 3271 3209 205 295 84 42 chr11 26975335 26975430 -121808042 + MIR SINE MIR 41 139 -123 2201 136 3 3 chr11 26975430 26975784 -121807688 - THE1C LTR MaLR -21 354 1 352 316 64 43 chr11 26975800 26976034 -121807438 - MIR SINE MIR -13 249 11 444 296 35 6 chr11 26977402 26977574 -121805898 + MLT1J2 LTR MaLR 267 443 -7 2354 188 75 48 chr11 26977576 26978285 -121805187 - Cheshire DNA MER1_type -2 2418 1691 755 197 0 0 chr11 26978285 26978427 -121805045 - MLT1A1 LTR MaLR 0 365 224 2350 78 0 3 chr11 26980448 26980743 -121802729 + AluY SINE Alu 1 294 -17 357 200 62 0 chr11 26980870 26980950 -121802522 - MIR SINE MIR -2 260 176 730 309 5 18 chr11 26981372 26981595 -121801877 - MIR SINE MIR -27 235 16 465 237 107 58 chr11 26982376 26982557 -121800915 + MIR SINE MIR 4 208 -54 225 0 0 0 chr11 26982557 26982582 -121800890 + (TA)n Simple_repeat Simple_repeat 2 26 0 465 237 107 58 chr11 26982582 26982637 -121800835 + MIR SINE MIR 208 259 -3 390 283 167 35 chr11 26982732 26982990 -121800482 - L3 LINE CR1 -42 1535 1244 * 438 261 99 0 chr11 26982989 26983131 -121800341 + MIR SINE MIR 92 247 -15 733 222 9 65 chr11 26984314 26984530 -121798942 - MER58A DNA MER1_type 0 224 21 314 320 114 41 chr11 26984685 26984904 -121798568 - MIR SINE MIR -5 257 23 250 341 55 55 chr11 26985031 26985213 -121798259 - L2 LINE L2 -143 3129 2948 399 265 31 0 chr11 26985791 26985889 -121797583 + L2 LINE L2 3207 3307 -6 362 354 42 16 chr11 26987431 26987623 -121795849 + L2 LINE L2 2887 3083 -189 223 337 0 24 chr11 26987724 26987807 -121795665 + L2 LINE L2 3192 3272 0 286 289 211 0 chr11 26987841 26987969 -121795503 + MIR3 SINE MIR 27 181 -27 356 264 58 58 chr11 26988109 26988230 -121795242 + MIR3 SINE MIR 35 155 -53 366 275 42 21 chr11 26988230 26988372 -121795100 - MER117 DNA MER1_type -2 195 51 204 196 41 41 chr11 26989226 26989323 -121794149 + (TTATA)n Simple_repeat Simple_repeat 5 101 0 815 341 70 20 chr11 26989436 26989595 -121793877 + L3 LINE CR1 975 1124 -453 1226 220 82 25 chr11 26989595 26989949 -121793523 - MLT1A2 LTR MaLR 0 374 1 815 341 70 20 chr11 26989949 26990144 -121793328 + L3 LINE CR1 1124 1347 -230 2071 131 47 33 chr11 26991570 26991929 -121791543 + THE1B LTR MaLR 1 364 0 11221 101 25 0 chr11 26991929 26993470 -121790002 + THE1B-int LTR MaLR 1 1580 0 1979 106 108 41 chr11 26993470 26993811 -121789661 + THE1B LTR MaLR 1 364 0 22 0 0 0 chr11 26994525 26994547 -121788925 + AT_rich Low_complexity Low_complexity 1 22 0 384 327 102 19 chr11 26994640 26994845 -121788627 - MIR SINE MIR -40 222 1 191 299 65 26 chr11 26994860 26994937 -121788535 + L2 LINE L2 3184 3263 -50 197 247 12 0 chr11 26995314 26995395 -121788077 + GA-rich Low_complexity Low_complexity 3 84 0 220 98 0 59 chr11 26995671 26995722 -121787750 + (GAAAA)n Simple_repeat Simple_repeat 4 51 0 229 308 0 43 chr11 26995737 26995854 -121787618 + A-rich Low_complexity Low_complexity 4 115 0 219 315 36 48 chr11 26997333 26997498 -121785974 + L2 LINE L2 2813 2975 -338 330 322 176 5 chr11 26997537 26997742 -121785730 - MIR SINE MIR -5 257 18 244 306 118 41 chr11 26997770 26998041 -121785431 + L2 LINE L2 3022 3313 0 582 176 0 59 chr11 26998216 26998335 -121785137 - L2 LINE L2 -15 3298 3187 957 269 72 21 chr11 26998341 26998676 -121784796 - LTR16A LTR ERVL -5 445 94 192 77 0 0 chr11 26999052 26999078 -121784394 + (CATA)n Simple_repeat Simple_repeat 3 28 0 461 253 180 0 chr11 26999679 26999829 -121783643 + MIR SINE MIR 73 249 -13 2299 113 43 38 chr11 27000233 27000606 -121782866 - THE1C LTR MaLR 0 375 1 239 270 56 11 chr11 27000635 27000724 -121782748 - MER103 DNA DNA -68 98 6 689 306 79 9 chr11 27000902 27001131 -121782341 - MIR SINE MIR -8 254 10 353 313 119 21 chr11 27001397 27001650 -121781822 - L2 LINE L2 -214 3058 2782 824 163 0 0 chr11 27001727 27001862 -121781610 + FLAM_C SINE Alu 9 143 0 2103 118 12 40 chr11 27002191 27002512 -121780960 + AluSx SINE Alu 1 312 0 277 189 0 0 chr11 27004657 27004710 -121778762 - MLT2B3 LTR ERVL -2 513 461 2077 221 11 74 chr11 27004852 27005416 -121778056 - MLT2B3 LTR ERVL -31 505 4 603 279 116 17 chr11 27007517 27007750 -121775722 + MIR SINE MIR 7 262 0 461 281 132 55 chr11 27008464 27008527 -121774945 + MLT1J2 LTR MaLR 78 135 -315 1614 148 31 69 chr11 27008527 27008844 -121774628 + AluJb SINE Alu 1 305 -7 461 281 132 55 chr11 27008844 27009107 -121774365 + MLT1J2 LTR MaLR 135 429 -21 300 189 44 33 chr11 27009293 27009383 -121774089 + MER88 LTR ERVL 79 169 -295 * 1482 230 54 32 chr11 27009305 27009770 -121773702 - MER74A LTR ERVL -70 488 14 556 294 71 19 chr11 27010234 27010755 -121772717 - L1ME LINE L1 -646 5520 4977 2124 177 8 0 chr11 27010929 27011291 -121772181 + MLT1A1 LTR MaLR 1 365 0 214 255 266 0 chr11 27012575 27012669 -121770803 - L2 LINE L2 -20 3293 3175 212 217 43 0 chr11 27012804 27012850 -121770622 + (TCTG)n Simple_repeat Simple_repeat 1 48 0 1084 30 47 0 chr11 27012851 27013020 -121770452 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 278 26 26 0 chr11 27013026 27013065 -121770407 + (TTCTC)n Simple_repeat Simple_repeat 3 42 0 245 321 24 0 chr11 27014871 27014955 -121768517 - MIR SINE MIR -15 247 162 209 378 20 20 chr11 27015018 27015116 -121768356 + L2 LINE L2 3180 3277 -36 490 300 104 22 chr11 27015881 27016111 -121767361 - L2 LINE L2 -2 3311 3063 605 299 87 22 chr11 27016118 27016584 -121766888 - MLT1H LTR MaLR 0 549 3 329 333 32 16 chr11 27016617 27016740 -121766732 + L2 LINE L2 3147 3271 -1 319 361 0 0 chr11 27016772 27016880 -121766592 - MER117 DNA MER1_type -36 161 54 1754 101 0 0 chr11 27017726 27017953 -121765519 - AluSc SINE Alu -1 308 82 537 227 0 0 chr11 27018253 27018363 -121765109 - MER20 DNA MER1_type 0 219 110 507 268 96 25 chr11 27018637 27018835 -121764637 - MIR SINE MIR -30 232 21 227 337 58 0 chr11 27019533 27019619 -121763853 - MIR SINE MIR -11 251 161 2186 152 158 44 chr11 27019669 27020196 -121763276 - LTR18B LTR ERVL -27 587 1 202 147 29 0 chr11 27020201 27020269 -121763203 + (TA)n Simple_repeat Simple_repeat 2 71 0 248 300 50 30 chr11 27020279 27020379 -121763093 - MIR SINE MIR -152 110 9 182 264 209 39 chr11 27020430 27020559 -121762913 + L3 LINE CR1 1170 1320 -257 472 337 34 0 chr11 27021829 27022007 -121761465 - MIR SINE MIR -28 234 51 235 254 0 18 chr11 27022058 27022122 -121761350 + GA-rich Low_complexity Low_complexity 5 108 0 733 370 53 23 chr11 27023187 27023728 -121759744 + L2 LINE L2 2549 3102 -211 2156 128 0 7 chr11 27023760 27024056 -121759416 - AluSx SINE Alu -18 294 1 294 306 16 16 chr11 27024620 27024744 -121758728 + MIR SINE MIR 102 225 -37 312 371 8 8 chr11 27024759 27024883 -121758589 - MIR SINE MIR -107 155 32 466 272 72 47 chr11 27024944 27025153 -121758319 + L1ME4a LINE L1 5877 6094 -27 2194 122 0 0 chr11 27025153 27025448 -121758024 - AluSg SINE Alu -15 295 1 466 272 72 47 chr11 27025448 27025473 -121757999 + L1ME4a LINE L1 6094 6117 -4 985 210 84 27 chr11 27025576 27025921 -121757551 + MSTD LTR MaLR 1 396 0 22 35 0 0 chr11 27026270 27026299 -121757173 + AT_rich Low_complexity Low_complexity 1 29 0 419 213 0 0 chr11 27027150 27027230 -121756242 - MIR SINE MIR 0 262 183 226 245 0 0 chr11 27027478 27027527 -121755945 + L2 LINE L2 3248 3296 -17 238 200 0 0 chr11 27027936 27027981 -121755491 - MIR3 SINE MIR -8 200 156 321 335 70 11 chr11 27027984 27028169 -121755303 - MER117 DNA MER1_type 0 197 2 262 263 92 13 chr11 27028614 27028690 -121754782 + MIR3 SINE MIR 93 155 -53 200 182 0 0 chr11 27028770 27028803 -121754669 + (TG)n Simple_repeat Simple_repeat 1 33 0 341 299 10 0 chr11 27032007 27032104 -121751368 - MIR SINE MIR -108 154 57 533 274 35 62 chr11 27032228 27032382 -121751090 - L2 LINE L2 0 3313 3165 1949 143 0 39 chr11 27032382 27032689 -121750783 + AluSx SINE Alu 1 295 -17 533 274 35 62 chr11 27032689 27032760 -121750712 - L2 LINE L2 -148 3165 3094 1399 187 106 3 chr11 27034191 27034476 -121748996 + MER63B DNA MER1_type 9 335 -727 1775 158 3 11 chr11 27034476 27034804 -121748668 - AluJb SINE Alu 0 326 1 1399 187 106 3 chr11 27034804 27034848 -121748624 + MER63B DNA MER1_type 335 373 -63 1738 163 7 4 chr11 27035710 27035986 -121747486 - MLT1A1 LTR MaLR -79 286 10 1769 182 14 14 chr11 27036217 27036564 -121746908 + MER7A DNA MER2_type 2 346 0 2010 70 7 25 chr11 27037525 27037811 -121745661 - L1PA7 LINE L1 -1 6153 5873 1306 198 172 15 chr11 27037841 27038236 -121745236 - MSTB2 LTR MaLR 0 457 1 3167 142 15 0 chr11 27038598 27039078 -121744394 + L1P3 LINE L1 14 500 -5375 24900 135 8 6 chr11 27039080 27043159 -121740313 + L1P LINE L1 1605 5690 -771 327 25 0 0 chr11 27044299 27044339 -121739133 + (CA)n Simple_repeat Simple_repeat 2 41 0 599 280 28 0 chr11 27045287 27045469 -121738003 - MIR SINE MIR 0 262 76 268 289 89 0 chr11 27045503 27045593 -121737879 + L2 LINE L2 3149 3246 -26 197 376 68 8 chr11 27045891 27046008 -121737464 + L2 LINE L2 2941 3064 -208 233 350 38 0 chr11 27046864 27046944 -121736528 - MIR SINE MIR -62 146 64 400 217 174 43 chr11 27047020 27047158 -121736314 + MER5B DNA MER1_type 23 178 0 1270 205 69 23 chr11 27047965 27048268 -121735204 + L1MA2 LINE L1 16 332 -7233 * 12531 159 28 19 chr11 27048251 27051586 -121731886 + L1MA2 LINE L1 1500 4869 -2696 1031 148 7 7 chr11 27051593 27051748 -121731724 + AluSx SINE Alu 1 155 -157 6975 126 9 28 chr11 27051748 27053494 -121729978 + L1MA2 LINE L1 6009 7723 0 351 285 33 74 chr11 27053738 27053980 -121729492 - HAL1 LINE L1 -1 2506 2275 302 309 59 15 chr11 27053986 27054122 -121729350 - HAL1 LINE L1 -208 2299 2158 974 139 97 28 chr11 27054126 27054342 -121729130 + MER44D DNA MER2_type 1 501 -108 410 278 139 120 chr11 27054488 27054704 -121728768 + MLT1F LTR MaLR 1 228 -314 2283 112 0 0 chr11 27054704 27055017 -121728455 - AluSq SINE Alu 0 313 1 410 278 139 120 chr11 27055017 27055174 -121728298 + MLT1F LTR MaLR 228 381 -161 1835 183 62 5 chr11 27055260 27055632 -121727840 - MSTD LTR MaLR -3 393 1 1141 254 49 14 chr11 27055644 27056014 -121727458 - HAL1 LINE L1 -742 1765 1383 1105 312 77 2 chr11 27056133 27056537 -121726935 + LTR16A LTR ERVL 17 450 0 506 262 34 56 chr11 27056583 27056904 -121726568 - HAL1 LINE L1 -1148 1359 1046 429 231 0 19 chr11 27057096 27057252 -121726220 + CT-rich Low_complexity Low_complexity 4 156 0 507 314 93 52 chr11 27058230 27058638 -121724834 - MLT1J2 LTR MaLR -2 448 24 255 303 184 7 chr11 27058703 27058855 -121724617 - MIR3 SINE MIR 0 208 30 339 265 17 26 chr11 27058930 27059047 -121724425 + MER103 DNA DNA 3 118 -48 487 350 47 20 chr11 27059589 27059889 -121723583 - L3 LINE CR1 -649 928 621 383 327 65 7 chr11 27060203 27060356 -121723116 - MIR SINE MIR -73 189 28 499 298 29 29 chr11 27060533 27060704 -121722768 - MER5A DNA MER1_type 0 189 19 1390 165 4 35 chr11 27061189 27061449 -121722023 - MLT1B LTR MaLR 0 390 139 22 35 0 0 chr11 27062609 27062638 -121720834 + AT_rich Low_complexity Low_complexity 1 29 0 883 172 24 53 chr11 27062804 27063013 -121720459 - MLT2D LTR ERVL -211 203 1 1787 175 16 0 chr11 27063016 27063331 -121720141 - L1MC1 LINE L1 -418 5915 5596 334 197 4 2 chr11 27063331 27063407 -121720065 + MLT1D LTR MaLR 298 505 0 277 315 27 18 chr11 27063819 27063930 -121719542 + MIR SINE MIR 56 167 -95 2217 128 0 3 chr11 27064356 27064669 -121718803 - AluSq SINE Alu 0 313 2 233 348 57 88 chr11 27064684 27065104 -121718368 + L2 LINE L2 2866 3272 0 390 256 156 69 chr11 27065953 27066113 -121717359 - MER5A DNA MER1_type -12 177 4 399 279 137 11 chr11 27066534 27066717 -121716755 - MIR SINE MIR -54 208 3 230 364 101 32 chr11 27067262 27067509 -121715963 - L3 LINE CR1 -164 1413 1150 537 322 62 6 chr11 27067528 27067705 -121715767 + MIR SINE MIR 26 212 -50 269 332 186 22 chr11 27067695 27068017 -121715455 - L3 LINE CR1 -476 1101 727 * 180 0 0 0 chr11 27068095 27068115 -121715357 + (TTA)n Simple_repeat Simple_repeat 2 21 0 3318 50 5 25 chr11 27068117 27068557 -121714915 - L1PA7 LINE L1 -18 6136 5706 1970 194 2 25 chr11 27069309 27069706 -121713766 - MLT1B LTR MaLR 0 390 3 2398 161 26 0 chr11 27069861 27070278 -121713194 - MSTC LTR MaLR 0 428 1 29 0 0 0 chr11 27070728 27070757 -121712715 + AT_rich Low_complexity Low_complexity 1 29 0 293 320 0 33 chr11 27070804 27070954 -121712518 + GA-rich Low_complexity Low_complexity 1 145 0 1871 138 3 64 chr11 27071445 27071772 -121711700 + AluSc SINE Alu 1 307 -2 378 0 0 0 chr11 27072836 27072878 -121710594 + (TG)n Simple_repeat Simple_repeat 1 42 0 339 25 0 0 chr11 27072877 27072917 -121710555 + (GA)n Simple_repeat Simple_repeat 1 40 0 * 312 333 128 7 chr11 27074073 27074214 -121709258 - MIR3 SINE MIR -21 187 30 504 81 0 0 chr11 27074314 27074388 -121709084 + (TA)n Simple_repeat Simple_repeat 2 75 0 551 269 54 50 chr11 27074809 27075069 -121708403 + L2 LINE L2 2949 3209 -104 2615 127 56 2 chr11 27075736 27076162 -121707310 + L1PA15 LINE L1 5717 6165 0 29 28 0 0 chr11 27076172 27076208 -121707264 + AT_rich Low_complexity Low_complexity 1 36 0 395 192 0 0 chr11 27076817 27076890 -121706582 + AluJ/FLAM SINE Alu 11 83 -219 383 374 11 22 chr11 27077542 27077724 -121705748 + MIR3 SINE MIR 15 194 -14 203 121 0 0 chr11 27079505 27079539 -121703933 - MER5A DNA MER1_type -152 37 4 343 352 59 0 chr11 27080242 27080396 -121703076 + HAL1 LINE L1 1384 1545 -962 276 240 0 0 chr11 27081561 27081611 -121701861 + MIR SINE MIR 78 127 -81 306 292 44 9 chr11 27081649 27081762 -121701710 - MIR SINE MIR 0 262 146 26 30 0 0 chr11 27082139 27082172 -121701300 + AT_rich Low_complexity Low_complexity 1 33 0 462 125 45 23 chr11 27082282 27082370 -121701102 - L1MC2 LINE L1 -2 6342 6253 1343 167 0 0 chr11 27082390 27082606 -121700866 - MSTA LTR MaLR -2 426 211 1143 143 0 0 chr11 27082623 27082784 -121700688 - AluJb SINE Alu -16 296 136 826 175 140 0 chr11 27082784 27082955 -121700517 - MSTA LTR MaLR -231 197 3 788 154 47 7 chr11 27082955 27083104 -121700368 - MSTA-int LTR MaLR -1 1650 1496 * 3438 167 20 5 chr11 27083095 27083730 -121699742 - MSTA-int LTR MaLR -1006 645 1 2123 170 80 10 chr11 27083730 27084130 -121699342 - MSTA LTR MaLR 0 428 1 988 138 87 41 chr11 27084135 27084353 -121699119 - L1MC1 LINE L1 -104 6229 6002 281 83 0 0 chr11 27084385 27084421 -121699051 + THE1B LTR MaLR 5 40 -324 28 48 0 0 chr11 27084680 27084722 -121698750 + AT_rich Low_complexity Low_complexity 1 42 0 416 339 48 26 chr11 27084728 27084958 -121698514 - MIR SINE MIR -3 259 25 410 295 94 19 chr11 27085717 27085925 -121697547 - MIR SINE MIR -24 238 19 289 315 32 10 chr11 27086831 27086957 -121696515 - MIR SINE MIR -86 122 26 180 270 16 16 chr11 27087293 27087356 -121696116 + L2 LINE L2 3250 3312 -1 211 147 0 0 chr11 27087585 27087619 -121695853 - MIR SINE MIR -10 252 219 181 342 63 13 chr11 27089381 27089460 -121694012 + L2 LINE L2 3001 3083 -189 1003 264 70 52 chr11 27089515 27089860 -121693612 - MER69 DNA AcHobo -2041 485 135 243 336 55 18 chr11 27090681 27090791 -121692681 + L2 LINE L2 3139 3252 -20 1059 174 162 43 chr11 27090871 27091151 -121692321 - AluJo SINE Alu 0 310 1 638 242 50 45 chr11 27092078 27092363 -121691109 + MLT1G1 LTR MaLR 10 267 -288 249 281 171 14 chr11 27092412 27092558 -121690914 + MLT1G1 LTR MaLR 407 575 -15 1699 267 55 9 chr11 27092572 27093152 -121690320 + L1ME3 LINE L1 5261 5867 -295 3401 128 66 2 chr11 27094331 27094935 -121688537 + L1PB2 LINE L1 1842 2484 -4379 4969 220 19 49 chr11 27095036 27095791 -121687681 + L1PB2 LINE L1 3996 4772 -2090 2202 130 3 0 chr11 27095791 27096098 -121687374 + AluSp SINE Alu 1 308 -5 4969 220 19 49 chr11 27096098 27096506 -121686966 + L1PB2 LINE L1 4772 5191 -1671 189 0 0 0 chr11 27096506 27096527 -121686945 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 4969 220 19 49 chr11 27096527 27096606 -121686866 + L1PB2 LINE L1 5191 5271 -1591 2000 107 41 4 chr11 27096606 27096981 -121686491 + AluSc SINE Alu 1 385 0 4969 220 19 49 chr11 27096981 27097133 -121686339 + L1PB2 LINE L1 5271 5351 -1511 519 84 21 42 chr11 27097236 27097331 -121686141 + L1PBa LINE L1 2519 2611 -4252 337 100 0 50 chr11 27097329 27097389 -121686083 + L1PBa LINE L1 2814 2870 -3993 * 1368 156 0 0 chr11 27097404 27097616 -121685856 - AluSq SINE Alu 0 313 102 2818 161 11 28 chr11 27097619 27098192 -121685280 + L1 LINE L1 2877 3439 -3423 186 71 0 0 chr11 27098413 27098441 -121685031 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2209 88 4 0 chr11 27098466 27098740 -121684732 - AluY SINE Alu -36 275 1 25 0 0 0 chr11 27098880 27098905 -121684567 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr11 27099543 27099571 -121683901 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr11 27099716 27099749 -121683723 + AT_rich Low_complexity Low_complexity 1 33 0 1043 255 14 3 chr11 27099897 27100187 -121683285 + L1 LINE L1 2750 3042 -3104 5596 142 19 7 chr11 27100291 27100903 -121682569 + L1PB2 LINE L1 5578 6181 -686 1483 200 39 0 chr11 27100903 27101188 -121682284 + AluJb SINE Alu 1 296 -16 5596 142 19 7 chr11 27101188 27101847 -121681625 + L1PB2 LINE L1 6181 6860 -7 2088 139 3 0 chr11 27101860 27102163 -121681309 + AluSq SINE Alu 1 304 -9 880 237 31 0 chr11 27102166 27102394 -121681078 + L1PA15-16 LINE L1 2841 3075 -4490 3539 269 19 16 chr11 27102400 27103653 -121679819 + L1PA16 LINE L1 2636 4215 -3350 1921 189 56 12 chr11 27103653 27104061 -121679411 - MSTB LTR MaLR 0 426 1 7548 205 43 12 chr11 27104061 27105662 -121677810 - MSTB-int LTR MaLR 0 1651 1 2164 179 37 22 chr11 27105674 27106081 -121677391 - MSTB LTR MaLR -13 413 1 2924 239 28 21 chr11 27106087 27107007 -121676465 + L1 LINE L1 4217 5143 -2422 2413 195 35 6 chr11 27107036 27107523 -121675949 + THE1B-int LTR MaLR 285 785 -795 749 147 0 0 chr11 27107525 27107641 -121675831 + THE1B-int LTR MaLR 1021 1136 -444 1447 118 5 0 chr11 27107746 27107949 -121675523 + THE1B-int LTR MaLR 1157 1360 -220 38416 75 7 12 chr11 27107949 27109694 -121673778 + L1PA3 LINE L1 1 1753 -4402 2480 18 0 0 chr11 27109694 27109968 -121673504 + AluYa5 SINE Alu 35 308 -3 38416 75 7 12 chr11 27109968 27114407 -121669065 + L1PA3 LINE L1 1753 6155 0 7022 57 8 1 chr11 27114416 27115547 -121667925 + L1PA6 LINE L1 5016 6153 -1 1595 103 4 0 chr11 27115573 27115807 -121667665 + THE1B-int LTR MaLR 1346 1580 0 2509 129 3 3 chr11 27115807 27116171 -121667301 + THE1B LTR MaLR 1 364 0 5242 209 38 2 chr11 27116171 27118092 -121665380 + L1PA16 LINE L1 5621 7583 -2 207 264 16 24 chr11 27119192 27119269 -121664203 + CT-rich Low_complexity Low_complexity 2 124 0 295 318 48 16 chr11 27119879 27120005 -121663467 + MIR3 SINE MIR 38 167 -41 21 71 0 0 chr11 27121968 27122010 -121661462 + AT_rich Low_complexity Low_complexity 1 42 0 1028 259 15 36 chr11 27122014 27122381 -121661091 - L1MD3 LINE L1 0 8041 7691 209 224 0 17 chr11 27122721 27122779 -121660693 + (CATATA)n Simple_repeat Simple_repeat 2 58 0 2512 67 0 0 chr11 27123361 27123659 -121659813 + AluY SINE Alu 1 298 -13 308 265 29 59 chr11 27123855 27123957 -121659515 - MIR SINE MIR -78 184 86 287 328 102 53 chr11 27124083 27124425 -121659047 + L2 LINE L2 2446 2804 -510 22 35 0 0 chr11 27124431 27124460 -121659012 + AT_rich Low_complexity Low_complexity 1 29 0 257 324 47 115 chr11 27124586 27124864 -121658608 + L2 LINE L2 3000 3258 -14 2329 51 20 3 chr11 27126048 27126176 -121657296 + AluY SINE Alu 1 125 -186 216 0 0 0 chr11 27126176 27126200 -121657272 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2329 51 20 3 chr11 27126200 27126367 -121657105 + AluY SINE Alu 125 301 -10 398 284 68 20 chr11 27127485 27127633 -121655839 - MIR SINE MIR -56 206 52 236 222 0 0 chr11 27127781 27127826 -121655646 - L2 LINE L2 -5 3308 3264 263 274 0 0 chr11 27128204 27128266 -121655206 - L2 LINE L2 -1 3312 3251 508 278 58 54 chr11 27128960 27129183 -121654289 + MIR SINE MIR 38 261 -1 272 301 85 45 chr11 27129420 27129619 -121653853 - MLT1J2 LTR MaLR -122 328 122 624 200 50 22 chr11 27130043 27130223 -121653249 + MER53 DNA DNA 3 187 -2 296 289 154 0 chr11 27130795 27130899 -121652573 - MIR SINE MIR -136 126 7 529 285 40 13 chr11 27130985 27131136 -121652336 + MIR SINE MIR 36 190 -72 729 275 120 63 chr11 27132452 27133013 -121650459 + MLT1H1 LTR MaLR 1 544 -11 346 288 187 23 chr11 27134313 27134532 -121648940 + MIR SINE MIR 7 261 -1 1150 168 46 50 chr11 27134767 27135029 -121648443 - L1MA7 LINE L1 -145 6146 5886 851 129 34 0 chr11 27135032 27135179 -121648293 + L1MA7 LINE L1 6137 6288 -3 251 327 0 0 chr11 27135246 27135301 -121648171 + L2 LINE L2 3147 3201 -71 858 289 98 15 chr11 27135392 27135869 -121647603 - LTR33 LTR ERVL -4 517 1 202 323 32 86 chr11 27136059 27136152 -121647320 - L2 LINE L2 -93 3179 3092 591 268 61 22 chr11 27136359 27136587 -121646885 + MLT1E LTR MaLR 15 251 -342 493 186 0 0 chr11 27136588 27136674 -121646798 - MLT1A1 LTR MaLR 0 365 280 759 157 143 0 chr11 27136675 27136815 -121646657 - AluJb SINE Alu -152 160 1 1599 261 101 48 chr11 27136826 27137530 -121645942 - L1MCc LINE L1 -4251 2871 2206 213 94 0 0 chr11 27137530 27137562 -121645910 + (TG)n Simple_repeat Simple_repeat 2 33 0 1599 261 101 48 chr11 27137562 27137739 -121645733 - L1MCc LINE L1 -4916 2206 2040 207 0 0 0 chr11 27137739 27137762 -121645710 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1599 261 101 48 chr11 27137762 27138411 -121645061 - L1MCc LINE L1 -5082 2040 1090 294 255 245 0 chr11 27138626 27138724 -121644748 + MER5A DNA MER1_type 61 182 -7 333 0 0 0 chr11 27138967 27139004 -121644468 + (TG)n Simple_repeat Simple_repeat 2 38 0 317 264 64 18 chr11 27139949 27140059 -121643413 + MIR SINE MIR 110 224 -38 790 276 166 33 chr11 27140650 27140872 -121642600 - MLT1D LTR MaLR -54 451 260 2000 117 0 4 chr11 27140872 27141153 -121642319 - AluSx SINE Alu 0 312 33 790 276 166 33 chr11 27141153 27141328 -121642144 - MLT1D LTR MaLR -245 260 1 348 335 108 12 chr11 27143785 27143952 -121639520 - MIR SINE MIR -70 192 10 185 311 185 15 chr11 27144563 27144698 -121638774 - MIR SINE MIR -12 250 93 256 380 9 26 chr11 27146686 27146773 -121636699 + MIR SINE MIR 34 121 -87 2275 99 0 0 chr11 27146773 27147105 -121636367 - AluSx SINE Alu 0 334 3 256 380 9 26 chr11 27147105 27147129 -121636343 + MIR SINE MIR 121 144 -64 2034 234 59 42 chr11 27147379 27148145 -121635327 + L1ME2 LINE L1 4530 5308 -838 635 276 18 26 chr11 27148157 27148385 -121635087 + L1ME2 LINE L1 5919 6144 -20 193 56 28 28 chr11 27148711 27148747 -121634725 + (TATATG)n Simple_repeat Simple_repeat 1 36 0 1929 169 137 11 chr11 27148749 27149121 -121634351 + MSTA LTR MaLR 10 428 0 8713 186 19 7 chr11 27149121 27150753 -121632719 + MSTA-int LTR MaLR 1 1651 0 2137 144 128 10 chr11 27150753 27151136 -121632336 + MSTA LTR MaLR 1 428 0 486 291 8 0 chr11 27151384 27151511 -121631961 - MLT1I LTR MaLR -253 156 29 25 31 0 0 chr11 27151798 27151830 -121631642 + AT_rich Low_complexity Low_complexity 1 32 0 32 26 0 0 chr11 27151885 27151924 -121631548 + AT_rich Low_complexity Low_complexity 1 39 0 1961 121 3 42 chr11 27151929 27152236 -121631236 + AluSc SINE Alu 1 295 -14 241 242 137 11 chr11 27152248 27152343 -121631129 - L1M4 LINE L1 -1035 5111 5005 5419 144 28 29 chr11 27152357 27153128 -121630344 + HSMAR2 DNA Mariner 339 1111 -191 2198 116 0 0 chr11 27153128 27153445 -121630027 + AluSx SINE Alu 1 317 0 5419 144 28 29 chr11 27153445 27153636 -121629836 + HSMAR2 DNA Mariner 1111 1301 -1 763 128 9 0 chr11 27153796 27153905 -121629567 - LTR40b LTR ERVL 0 462 353 14649 202 18 10 chr11 27153998 27160468 -121623004 + L1PB1 LINE L1 6 6866 -1 1104 291 56 16 chr11 27160488 27160808 -121622664 - LTR40a LTR ERVL -121 398 66 317 333 0 11 chr11 27161305 27161392 -121622080 + MIR3 SINE MIR 15 100 -108 2089 188 83 11 chr11 27162419 27162855 -121620617 + MLT1C LTR MaLR 1 467 0 708 267 19 24 chr11 27162922 27163132 -121620340 + MER3 DNA MER1_type 1 209 0 275 343 0 0 chr11 27164439 27164541 -121618931 - L2 LINE L2 -1367 1947 1846 254 394 65 7 chr11 27164605 27164760 -121618712 + L2 LINE L2 2596 2759 -555 329 232 33 55 chr11 27164767 27164948 -121618524 + L1MC5 LINE L1 7488 7664 -297 2867 206 58 83 chr11 27165525 27166429 -121617043 + L1MD2 LINE L1 5464 6344 -15 30 27 0 0 chr11 27166586 27166623 -121616849 + AT_rich Low_complexity Low_complexity 1 37 0 846 313 61 67 chr11 27166834 27167810 -121615662 - L2 LINE L2 -140 3173 2220 1709 110 11 0 chr11 27168046 27168310 -121615162 + L1 LINE L1 4556 4822 -1324 501 17 0 0 chr11 27168497 27168555 -121614917 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 248 292 97 42 chr11 27169924 27170068 -121613404 + MIR SINE MIR 111 262 0 227 342 59 20 chr11 27170444 27170646 -121612826 - L2 LINE L2 -877 2437 2228 701 281 77 16 chr11 27170850 27171096 -121612376 + MIR SINE MIR 2 262 0 187 378 75 51 chr11 27171168 27171462 -121612010 + L2 LINE L2 2940 3240 -32 21 36 0 0 chr11 27171532 27171560 -121611912 + AT_rich Low_complexity Low_complexity 1 28 0 184 306 20 0 chr11 27171567 27171616 -121611856 - MIR SINE MIR -19 243 194 614 152 9 0 chr11 27172307 27172419 -121611053 + FLAM_C SINE Alu 31 143 0 374 285 6 58 chr11 27172696 27172868 -121610604 + L1ME LINE L1 5559 5721 -400 460 88 18 35 chr11 27173146 27173259 -121610213 + (TAGA)n Simple_repeat Simple_repeat 2 112 0 210 143 0 0 chr11 27173365 27173400 -121610072 + (TA)n Simple_repeat Simple_repeat 1 35 0 221 203 0 78 chr11 27174436 27174500 -121608972 - MIR SINE MIR -108 154 96 799 261 96 56 chr11 27175760 27175836 -121607636 + MLT1E LTR MaLR 80 152 -441 405 0 0 0 chr11 27175836 27175881 -121607591 + (TG)n Simple_repeat Simple_repeat 2 46 0 799 261 96 56 chr11 27175881 27176107 -121607365 + MLT1E LTR MaLR 152 394 -199 570 206 59 0 chr11 27176080 27176216 -121607256 + MLT1E LTR MaLR 511 654 0 * 22 35 0 0 chr11 27178737 27178766 -121604706 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr11 27178876 27178906 -121604566 + AT_rich Low_complexity Low_complexity 1 30 0 1564 285 107 93 chr11 27179809 27181650 -121601822 + L2 LINE L2 1442 3313 0 214 232 43 29 chr11 27181700 27181769 -121601703 - MIR SINE MIR -64 144 84 1351 315 72 65 chr11 27182532 27184165 -121599307 + L1ME LINE L1 3383 5025 -1121 602 84 0 0 chr11 27184166 27184249 -121599223 + AluSg/x SINE Alu 219 301 -9 230 319 76 17 chr11 27184570 27184689 -121598783 + L1ME LINE L1 5458 5583 -538 238 325 32 26 chr11 27184729 27184883 -121598589 + L1ME LINE L1 5628 5782 -380 1218 234 75 3 chr11 27184974 27185256 -121598216 + AluJo SINE Alu 1 302 0 603 158 15 8 chr11 27185288 27185421 -121598051 + GA-rich Low_complexity Low_complexity 3 136 0 1727 146 76 25 chr11 27185483 27185840 -121597632 - THE1C LTR MaLR 0 375 1 9608 118 8 88 chr11 27185841 27186158 -121597314 - THE1C-int LTR MaLR -1 1579 1238 2163 103 19 26 chr11 27186158 27186468 -121597004 - AluSg SINE Alu -2 308 1 9608 118 8 88 chr11 27186468 27187867 -121595605 - THE1C-int LTR MaLR -342 1238 1 1911 122 68 54 chr11 27187867 27188237 -121595235 - THE1C LTR MaLR 0 375 1 868 138 36 0 chr11 27188786 27188953 -121594519 + L1MA8 LINE L1 6119 6291 0 258 318 91 13 chr11 27189404 27189558 -121593914 + MIR SINE MIR 53 218 -44 1734 146 0 63 chr11 27190832 27191157 -121592315 + AluSx SINE Alu 1 306 0 288 158 0 0 chr11 27191812 27191869 -121591603 + GA-rich Low_complexity Low_complexity 1 57 0 188 65 0 32 chr11 27192016 27192047 -121591425 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 484 305 62 49 chr11 27193819 27194127 -121589345 + L2 LINE L2 2923 3234 -79 1179 151 110 33 chr11 27194151 27194488 -121588984 - Charlie1a DNA MER1_type -4 1451 1089 3428 214 76 27 chr11 27194514 27194780 -121588692 - Charlie1a DNA MER1_type -1756 1005 754 2139 134 0 0 chr11 27194780 27195078 -121588394 - AluSx SINE Alu -14 298 1 3428 214 76 27 chr11 27195078 27195312 -121588160 - Charlie1a DNA MER1_type -2007 754 533 2060 144 0 3 chr11 27195312 27195610 -121587862 + AluSx SINE Alu 2 298 -14 3428 214 76 27 chr11 27195610 27196065 -121587407 - Charlie1a DNA MER1_type -2228 533 2 389 240 85 85 chr11 27196070 27196270 -121587202 + MIR SINE MIR 13 212 -50 2099 154 46 29 chr11 27196847 27197389 -121586083 + MLT2A2 LTR ERVL 3 554 0 424 347 119 25 chr11 27197401 27197721 -121585751 - MLT1K LTR MaLR -229 359 10 281 286 165 8 chr11 27198187 27198320 -121585152 + MIR SINE MIR 74 227 -35 319 376 34 98 chr11 27198626 27199347 -121584125 - L2 LINE L2 0 3272 2601 216 111 0 0 chr11 27199374 27199410 -121584062 + (ATG)n Simple_repeat Simple_repeat 3 38 0 847 219 5 33 chr11 27199503 27199718 -121583754 - MER3 DNA MER1_type 0 209 1 1739 103 0 21 chr11 27200189 27200432 -121583040 + AluSg SINE Alu 55 292 -18 1733 249 27 17 chr11 27201123 27201224 -121582248 + MLT1F LTR MaLR 3 102 -440 3347 137 40 5 chr11 27201224 27201799 -121581673 - LTR49 LTR ERV1 0 595 1 1733 249 27 17 chr11 27201799 27202110 -121581362 + MLT1F LTR MaLR 102 419 -123 * 2964 92 5 1 chr11 27202104 27202710 -121580762 + PABL_A LTR ERV1 8 660 0 457 186 50 118 chr11 27202710 27202840 -121580632 + MLT1F LTR MaLR 424 542 0 2358 77 0 3 chr11 27202864 27203163 -121580309 - AluY SINE Alu -13 298 1 3748 150 13 2 chr11 27203216 27203844 -121579628 - MER41B LTR ERV1 0 635 1 7096 102 28 10 chr11 27203844 27204883 -121578589 - MER41B-int LTR ERV1 0 5946 4889 3332 158 79 44 chr11 27204881 27205613 -121577859 - HUERS-P1 LTR ERV1 -3245 3018 2261 * 498 128 39 0 chr11 27205638 27205716 -121577756 - HUERS-P1 LTR ERV1 -4239 2024 1944 * 2921 148 80 22 chr11 27205695 27206234 -121577238 - HUERS-P1 LTR ERV1 -4171 1775 1206 * 4204 160 47 4 chr11 27206220 27206950 -121576522 - HUERS-P1 LTR ERV1 -5017 929 169 26 30 0 0 chr11 27207287 27207320 -121576152 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chr11 27207410 27207436 -121576036 + AT_rich Low_complexity Low_complexity 1 26 0 1296 148 148 71 chr11 27207529 27207868 -121575604 + LTR49 LTR ERV1 201 565 -30 183 154 46 0 chr11 27208101 27208166 -121575306 + (TA)n Simple_repeat Simple_repeat 1 68 0 765 310 106 24 chr11 27208733 27209149 -121574323 + MLT1J2 LTR MaLR 1 450 0 523 246 18 83 chr11 27209591 27209819 -121573653 + MER58C DNA MER1_type 2 214 -1 646 310 98 18 chr11 27210231 27210557 -121572915 + L3 LINE CR1 1153 1504 -73 31 0 0 0 chr11 27211087 27211118 -121572354 + AT_rich Low_complexity Low_complexity 1 31 0 198 159 45 0 chr11 27211454 27211498 -121571974 + MIR SINE MIR 83 128 -80 337 379 85 20 chr11 27212484 27212790 -121570682 + L2 LINE L2 2629 2954 -360 3231 140 22 4 chr11 27213664 27214213 -121569259 + L1MA8 LINE L1 5730 6288 -3 21 36 0 0 chr11 27214961 27214989 -121568483 + AT_rich Low_complexity Low_complexity 1 28 0 324 322 168 7 chr11 27215825 27216111 -121567361 + L1ME4a LINE L1 5752 6083 -38 2442 66 10 0 chr11 27266619 27266923 -121516549 - AluSp SINE Alu -6 307 1 674 285 52 0 chr11 27267442 27267635 -121515837 + MIR SINE MIR 7 209 -53 1815 169 10 0 chr11 27267712 27268013 -121515459 - AluJo SINE Alu -8 304 1 387 328 99 15 chr11 27268122 27268323 -121515149 - MIR SINE MIR -6 256 39 2094 111 0 0 chr11 27268820 27269131 -121514341 + AluSx SINE Alu 12 312 0 1212 138 10 10 chr11 27269727 27269922 -121513550 + MER46A DNA MER2_type 27 221 -15 499 294 53 12 chr11 27270240 27270410 -121513062 + MER5B DNA MER1_type 1 177 -1 232 146 56 0 chr11 27271751 27271840 -121511632 + (TA)n Simple_repeat Simple_repeat 1 94 0 1708 106 0 4 chr11 27271842 27272069 -121511403 - AluSg/x SINE Alu -17 295 70 2091 117 0 39 chr11 27272163 27272471 -121511001 - AluSx SINE Alu -14 298 3 337 301 60 8 chr11 27272510 27272643 -121510829 - L1M4 LINE L1 -3630 2516 2377 23 33 0 0 chr11 27272963 27272993 -121510479 + AT_rich Low_complexity Low_complexity 1 30 0 311 344 116 14 chr11 27273028 27273374 -121510098 + L1 LINE L1 3094 3474 -2672 2246 105 3 0 chr11 27274440 27274736 -121508736 + AluSp SINE Alu 1 297 -16 207 0 0 0 chr11 27274950 27274973 -121508499 + (TAGA)n Simple_repeat Simple_repeat 1 23 0 183 138 0 0 chr11 27275375 27275404 -121508068 + L3 LINE CR1 1454 1482 -95 402 300 93 0 chr11 27275580 27275720 -121507752 + MLT1H1 LTR MaLR 403 555 0 369 0 0 0 chr11 27276514 27276555 -121506917 + (CA)n Simple_repeat Simple_repeat 1 41 0 244 280 65 11 chr11 27276915 27277008 -121506464 - MIR SINE MIR -53 209 112 247 189 14 14 chr11 27277012 27277086 -121506386 + GA-rich Low_complexity Low_complexity 5 78 0 278 336 8 52 chr11 27277255 27277389 -121506083 - MIR SINE MIR -133 129 2 454 289 102 16 chr11 27277396 27277711 -121505761 + HAL1 LINE L1 995 1336 -1171 497 288 78 79 chr11 27277721 27278116 -121505356 + LTR16B LTR ERVL 12 441 -9 2012 246 91 76 chr11 27278127 27279145 -121504327 + HAL1 LINE L1 1334 2372 -135 2266 82 0 13 chr11 27279145 27279448 -121504024 + AluY SINE Alu 1 299 -12 2012 246 91 76 chr11 27279448 27279585 -121503887 + HAL1 LINE L1 2372 2506 -1 212 244 23 47 chr11 27280063 27280149 -121503323 + (TATATG)n Simple_repeat Simple_repeat 5 88 0 259 299 155 10 chr11 27280172 27280269 -121503203 - MIR SINE MIR -103 159 49 2473 59 7 0 chr11 27280284 27280591 -121502881 + AluY SINE Alu 1 309 -2 28 0 0 0 chr11 27280591 27280619 -121502853 + AT_rich Low_complexity Low_complexity 1 28 0 202 297 0 68 chr11 27281414 27281488 -121501984 - L2 LINE L2 0 3313 3245 484 268 109 33 chr11 27281525 27281708 -121501764 - MIR SINE MIR -32 230 34 1320 202 48 38 chr11 27281751 27282043 -121501429 - AluJb SINE Alu -17 295 1 781 319 41 57 chr11 27282580 27283146 -121500326 - L2 LINE L2 0 3313 2758 29 73 0 12 chr11 27283827 27283860 -121499612 + AT_rich Low_complexity Low_complexity 1 33 -48 209 95 0 24 chr11 27283860 27283902 -121499570 + (TTTAA)n Simple_repeat Simple_repeat 5 45 0 29 73 0 12 chr11 27283902 27283950 -121499522 + AT_rich Low_complexity Low_complexity 33 81 0 21 36 0 0 chr11 27284152 27284180 -121499292 + AT_rich Low_complexity Low_complexity 1 28 0 1995 138 30 3 chr11 27284603 27284907 -121498565 + AluSx SINE Alu 1 312 0 24 32 0 0 chr11 27285234 27285265 -121498207 + AT_rich Low_complexity Low_complexity 1 31 0 357 389 39 56 chr11 27285480 27286099 -121497373 - L2 LINE L2 -221 3051 2442 2348 105 0 0 chr11 27287298 27287604 -121495868 + AluSg SINE Alu 1 306 -4 409 134 0 0 chr11 27288001 27288068 -121495404 + MADE1 DNA Mariner 13 79 -1 278 306 134 25 chr11 27288762 27288919 -121494553 - MIR SINE MIR -69 193 20 189 0 0 0 chr11 27288953 27288974 -121494498 + (TA)n Simple_repeat Simple_repeat 2 22 0 1155 325 63 25 chr11 27289381 27290012 -121493460 + L1MA6 LINE L1 399 1433 -6133 4972 238 38 13 chr11 27290539 27293610 -121489862 + L1MA6 LINE L1 2097 4949 -2616 2482 156 46 42 chr11 27293608 27294158 -121489314 + L1MA6 LINE L1 6341 6905 -814 * 2285 91 3 0 chr11 27294158 27294455 -121489017 + AluSp SINE Alu 1 298 -15 2482 156 46 42 chr11 27294455 27294754 -121488718 + L1MA6 LINE L1 6905 7201 -518 444 120 0 43 chr11 27294754 27294846 -121488626 + L1P3 LINE L1 1 88 -5787 19204 146 35 51 chr11 27295046 27300220 -121483252 + L1P3 LINE L1 72 5228 -1233 1333 185 45 6 chr11 27300241 27300554 -121482918 + L1MA6 LINE L1 7394 7718 -1 421 318 76 38 chr11 27300756 27300967 -121482505 - L1ME4a LINE L1 -269 5852 5634 26 30 0 0 chr11 27301285 27301318 -121482154 + AT_rich Low_complexity Low_complexity 1 33 0 480 147 1 69 chr11 27301492 27301603 -121481869 + L1MA6 LINE L1 5972 6087 -213 1404 180 25 101 chr11 27301608 27301924 -121481548 - AluJo SINE Alu -20 292 1 295 296 24 64 chr11 27302659 27302784 -121480688 - MER91B DNA MER1_type -60 130 11 278 296 80 11 chr11 27303233 27303321 -121480151 + MIR SINE MIR 95 188 -74 579 219 10 20 chr11 27303697 27303967 -121479505 + GA-rich Low_complexity Low_complexity 1 267 0 1035 111 11 11 chr11 27303969 27304149 -121479323 + (GGAGA)n Simple_repeat Simple_repeat 1 180 0 40 21 0 0 chr11 27306094 27306141 -121477331 + AT_rich Low_complexity Low_complexity 1 47 0 3648 93 4 4 chr11 27306703 27307228 -121476244 + LTR17 LTR ERV1 256 780 0 4755 72 10 22 chr11 27307250 27307921 -121475551 + HERV17 LTR ERV1 22 684 -7942 5813 76 12 39 chr11 27308088 27308983 -121474489 + HERV17 LTR ERV1 732 1602 -7024 487 258 16 11 chr11 27309098 27309280 -121474192 + HERV17 LTR ERV1 1180 1362 -7264 252 0 0 0 chr11 27309446 27309474 -121473998 + (A)n Simple_repeat Simple_repeat 1 28 0 17013 60 3 0 chr11 27309479 27311685 -121471787 + HERV17 LTR ERV1 1543 3754 -4872 13580 60 0 1 chr11 27311664 27313409 -121470063 + HERV17 LTR ERV1 5405 7147 -1479 * 304 26 0 0 chr11 27313405 27313444 -121470028 + HERV17 LTR ERV1 7510 7548 -1078 * 2235 39 0 4 chr11 27313434 27313714 -121469758 + HERV17 LTR ERV1 8335 8613 -13 257 268 116 63 chr11 27313714 27313727 -121469745 + MIR SINE MIR 34 45 -217 5291 109 14 9 chr11 27313727 27314503 -121468969 + LTR17 LTR ERV1 1 780 0 257 268 116 63 chr11 27314503 27314701 -121468771 + MIR SINE MIR 45 256 -6 1122 174 65 140 chr11 27315010 27315503 -121467969 + L1MB7 LINE L1 5729 6184 0 358 258 58 26 chr11 27316722 27316877 -121466595 + L1ME2 LINE L1 5995 6154 -10 22 0 0 0 chr11 27316885 27316907 -121466565 + AT_rich Low_complexity Low_complexity 1 22 0 1757 154 68 0 chr11 27316976 27317256 -121466216 - AluSx SINE Alu -13 299 1 2457 65 7 3 chr11 27318130 27318440 -121465032 + AluY SINE Alu 1 311 0 265 130 0 0 chr11 27318545 27318591 -121464881 + AluSc SINE Alu 252 297 -2 616 254 8 0 chr11 27318701 27318827 -121464645 + MER5B DNA MER1_type 43 169 -9 339 275 144 25 chr11 27319103 27319240 -121464232 - MIR SINE MIR -61 147 17 221 278 42 14 chr11 27319884 27319956 -121463516 - L2 LINE L2 -2933 381 308 199 308 19 67 chr11 27320129 27320233 -121463239 - MIR3 SINE MIR -7 201 103 204 245 0 38 chr11 27320347 27320400 -121463072 + L2 LINE L2 3222 3272 0 1980 100 4 0 chr11 27320505 27320799 -121462673 + AluSx SINE Alu 21 315 0 209 272 105 78 chr11 27322019 27322210 -121461262 + L2 LINE L2 3118 3313 0 266 219 62 21 chr11 27322212 27322308 -121461164 - L1ME4a LINE L1 -58 6063 5964 2336 110 3 0 chr11 27323220 27323529 -121459943 - AluSx SINE Alu -2 310 1 321 287 73 40 chr11 27323659 27323809 -121459663 - MIR SINE MIR -6 256 102 897 315 75 71 chr11 27324489 27324969 -121458503 + MER69 DNA AcHobo 2010 2491 -35 230 342 18 9 chr11 27325005 27325116 -121458356 - MIR SINE MIR -30 232 121 2821 306 151 23 chr11 27326175 27327365 -121456107 + L2 LINE L2 7 1407 -1907 2076 109 22 22 chr11 27327365 27327678 -121455794 - AluSq SINE Alu 0 313 1 2821 306 151 23 chr11 27327678 27327900 -121455572 + L2 LINE L2 1407 1599 -1715 776 272 32 51 chr11 27328093 27328409 -121455063 - L2 LINE L2 0 3313 3004 180 174 0 65 chr11 27328418 27328464 -121455008 - L2 LINE L2 0 3313 3271 340 347 55 15 chr11 27328588 27328838 -121454634 - MIR SINE MIR -1 261 4 711 234 181 27 chr11 27329248 27330016 -121453456 - Charlie2 DNA MER1_type 0 2862 1958 195 186 0 0 chr11 27330033 27330076 -121453396 + (TATG)n Simple_repeat Simple_repeat 2 44 0 185 105 0 26 chr11 27332944 27332982 -121450490 + (TC)n Simple_repeat Simple_repeat 2 38 0 26 74 0 0 chr11 27334785 27334839 -121448633 + AT_rich Low_complexity Low_complexity 1 54 0 491 236 35 80 chr11 27336563 27336762 -121446710 + MIR SINE MIR 22 211 -51 875 260 143 29 chr11 27336841 27337254 -121446218 - L1ME3A LINE L1 -32 6138 5677 469 238 92 37 chr11 27337774 27337938 -121445534 + MIR SINE MIR 34 206 -56 355 256 0 0 chr11 27340176 27340258 -121443214 + L1MC4 LINE L1 6614 6695 -1347 313 333 0 0 chr11 27340186 27340276 -121443196 - L1MC4 LINE L1 -1339 6703 6614 * 333 0 0 0 chr11 27341528 27341565 -121441907 + (CA)n Simple_repeat Simple_repeat 2 38 0 26 30 0 0 chr11 27341653 27341686 -121441786 + AT_rich Low_complexity Low_complexity 1 33 0 23 33 0 0 chr11 27343316 27343346 -121440126 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr11 27343620 27343641 -121439831 + AT_rich Low_complexity Low_complexity 1 21 0 360 0 0 0 chr11 27345084 27345124 -121438348 + (TG)n Simple_repeat Simple_repeat 2 41 0 24 53 0 0 chr11 27347389 27347427 -121436045 + AT_rich Low_complexity Low_complexity 1 38 0 2469 57 0 0 chr11 27347482 27347780 -121435692 - AluY SINE Alu -13 298 1 504 269 67 13 chr11 27348319 27348468 -121435004 + MER5A DNA MER1_type 12 168 -21 760 272 42 8 chr11 27349974 27350213 -121433259 + L1MEc LINE L1 35 281 -6115 2036 258 42 23 chr11 27350331 27351026 -121432446 + L1ME1 LINE L1 5455 6162 -4 715 277 6 0 chr11 27351059 27351218 -121432254 - MER5B DNA MER1_type 0 178 19 277 333 93 22 chr11 27352796 27352979 -121430493 - MIR SINE MIR -56 206 11 3925 169 30 8 chr11 27353967 27354713 -121428759 + L1MB1 LINE L1 5405 6166 -2 40 87 0 0 chr11 27354716 27354819 -121428653 + AT_rich Low_complexity Low_complexity 1 103 0 219 274 84 32 chr11 27354852 27354947 -121428525 + MIR SINE MIR 49 148 -114 280 345 230 0 chr11 27357176 27357324 -121426148 - MER91A DNA MER1_type 0 196 15 22 35 0 0 chr11 27359378 27359407 -121424065 + AT_rich Low_complexity Low_complexity 1 29 0 2004 149 31 23 chr11 27359554 27359943 -121423529 - L1MA8 LINE L1 -18 6273 5882 204 40 0 0 chr11 27359973 27359998 -121423474 + (TG)n Simple_repeat Simple_repeat 2 26 0 635 189 0 0 chr11 27360013 27360124 -121423348 + L1MA8 LINE L1 5782 5892 -399 3616 67 0 0 chr11 27360350 27360813 -121422659 + L1PA5 LINE L1 5692 6154 0 1059 288 41 29 chr11 27360827 27361341 -121422131 + LTR33 LTR ERVL 2 521 0 22 35 0 0 chr11 27361380 27361409 -121422063 + AT_rich Low_complexity Low_complexity 1 29 0 539 311 60 33 chr11 27361661 27362121 -121421351 + LTR33A LTR ERVL 4 520 -3 22 56 0 0 chr11 27362515 27362551 -121420921 + AT_rich Low_complexity Low_complexity 1 36 0 6866 61 39 0 chr11 27362820 27363849 -121419623 - L1PA7 LINE L1 -6 6148 5108 1291 79 0 0 chr11 27363849 27364026 -121419446 - L1PA7 LINE L1 -2167 3979 3803 386 296 89 22 chr11 27364374 27364509 -121418963 + MIR SINE MIR 114 257 -5 369 0 0 0 chr11 27365097 27365138 -121418334 + (TG)n Simple_repeat Simple_repeat 2 42 0 398 284 142 17 chr11 27365722 27365898 -121417574 + MIR SINE MIR 65 262 0 560 282 39 0 chr11 27365980 27366136 -121417336 + MIR SINE MIR 101 262 0 23 0 0 0 chr11 27367247 27367270 -121416202 + AT_rich Low_complexity Low_complexity 1 23 0 341 208 0 0 chr11 27367568 27367640 -121415832 + L1ME4a LINE L1 5794 5865 -256 230 270 14 0 chr11 27367685 27367759 -121415713 + (TA)n Simple_repeat Simple_repeat 2 76 0 2100 129 7 0 chr11 27367929 27368232 -121415240 - AluSx SINE Alu -7 305 1 21 0 0 0 chr11 27368323 27368344 -121415128 + AT_rich Low_complexity Low_complexity 1 21 0 2367 87 0 3 chr11 27368387 27368698 -121414774 + AluY SINE Alu 1 310 -1 305 289 49 14 chr11 27368970 27369112 -121414360 - L1ME4a LINE L1 -23 6098 5952 388 324 67 0 chr11 27369281 27369534 -121413938 - L1ME4a LINE L1 -294 5827 5558 352 64 0 0 chr11 27370858 27370905 -121412567 - MADE1 DNA Mariner 0 80 34 643 349 50 17 chr11 27371310 27371857 -121411615 - L2 LINE L2 -82 3231 2671 214 364 15 0 chr11 27372271 27372337 -121411135 + L2 LINE L2 3119 3185 -87 30 69 0 0 chr11 27372518 27372576 -121410896 + AT_rich Low_complexity Low_complexity 1 58 0 2129 98 6 31 chr11 27373372 27373689 -121409783 - AluSc SINE Alu 0 309 1 526 28 28 0 chr11 27373753 27373825 -121409647 + (TAGA)n Simple_repeat Simple_repeat 1 74 0 326 331 69 15 chr11 27373933 27374063 -121409409 + MIR SINE MIR 14 150 -112 342 277 32 11 chr11 27374211 27374305 -121409167 - MER5A DNA MER1_type -85 104 9 388 114 32 24 chr11 27374793 27374916 -121408556 + (TATAA)n Simple_repeat Simple_repeat 1 124 0 224 348 80 9 chr11 27375248 27375360 -121408112 + MIR SINE MIR 21 140 -68 180 296 127 0 chr11 27375754 27375825 -121407647 + MIR SINE MIR 173 252 -10 303 333 9 27 chr11 27377884 27377995 -121405477 + MIR3 SINE MIR 87 195 -13 222 156 0 0 chr11 27378706 27378751 -121404721 + (TCCA)n Simple_repeat Simple_repeat 3 47 0 296 406 33 69 chr11 27378752 27379171 -121404301 - L2 LINE L2 0 3272 2869 2032 196 103 12 chr11 27380319 27380714 -121402758 + MER67C LTR ERV1 2 501 -209 1745 142 91 28 chr11 27380714 27381067 -121402405 + THE1C LTR MaLR 1 375 0 2032 196 103 12 chr11 27381067 27381292 -121402180 + MER67C LTR ERV1 501 704 -6 213 39 0 0 chr11 27381787 27381813 -121401659 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2449 45 0 0 chr11 27381815 27382104 -121401368 - AluY SINE Alu -22 289 1 22 0 0 0 chr11 27382706 27382728 -121400744 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr11 27382761 27382788 -121400684 + AT_rich Low_complexity Low_complexity 1 27 0 28 48 0 0 chr11 27383105 27383147 -121400325 + AT_rich Low_complexity Low_complexity 1 42 0 446 323 12 12 chr11 27383161 27383325 -121400147 + MER5B DNA MER1_type 14 177 -1 21 0 0 0 chr11 27383458 27383479 -121399993 + AT_rich Low_complexity Low_complexity 1 21 0 1123 216 150 13 chr11 27384245 27384551 -121398921 + MLT1A1 LTR MaLR 18 365 0 34 0 0 0 chr11 27385228 27385262 -121398210 + AT_rich Low_complexity Low_complexity 1 34 0 23 54 0 0 chr11 27385358 27385395 -121398077 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr11 27385910 27385945 -121397527 + AT_rich Low_complexity Low_complexity 1 35 0 23 68 0 0 chr11 27388338 27388382 -121395090 + AT_rich Low_complexity Low_complexity 1 44 0 259 184 83 64 chr11 27388610 27388719 -121394753 + MER103 DNA DNA 53 163 -3 573 290 92 18 chr11 27389427 27389644 -121393828 + MIR SINE MIR 20 252 -10 821 360 80 0 chr11 27390542 27390903 -121392569 + L2 LINE L2 2516 2905 -409 384 284 73 0 chr11 27390972 27391081 -121392391 + L2 LINE L2 3197 3313 0 316 375 67 13 chr11 27391875 27392099 -121391373 + L2 LINE L2 2615 2850 -464 385 222 79 56 chr11 27392115 27392241 -121391231 - MER5B DNA MER1_type -46 132 4 261 328 42 25 chr11 27393291 27393410 -121390062 + L2 LINE L2 3133 3253 -19 2100 110 27 0 chr11 27393857 27394149 -121389323 - AluSc SINE Alu -9 300 1 2072 130 10 0 chr11 27394399 27394698 -121388774 + AluSx SINE Alu 2 303 -9 216 212 0 0 chr11 27394888 27394954 -121388518 + (TA)n Simple_repeat Simple_repeat 2 67 0 23 54 0 0 chr11 27394970 27395007 -121388465 + AT_rich Low_complexity Low_complexity 1 37 0 1459 277 39 9 chr11 27396388 27396850 -121386622 + MER110 LTR ERV1 1 476 -15 242 247 173 12 chr11 27396860 27396941 -121386531 - MIR SINE MIR -158 104 11 415 327 168 9 chr11 27397519 27397739 -121385733 - MIR SINE MIR 0 262 8 241 296 34 11 chr11 27397905 27397993 -121385479 + L2 LINE L2 1851 1940 -1374 1053 47 0 0 chr11 27397993 27398120 -121385352 - AluY SINE Alu -5 306 180 962 175 33 42 chr11 27398125 27398365 -121385107 + MSTA-int LTR MaLR 1343 1580 0 1633 183 126 23 chr11 27398365 27398753 -121384719 + MSTA LTR MaLR 1 428 0 576 102 31 10 chr11 27398754 27398852 -121384620 - L1M LINE L1 -889 5414 5315 * 1249 195 49 3 chr11 27398850 27399158 -121384314 + L1PB4 LINE L1 4982 5303 -843 24 0 0 0 chr11 27399209 27399233 -121384239 + AT_rich Low_complexity Low_complexity 1 24 0 2290 111 3 0 chr11 27399236 27399534 -121383938 + AluSg SINE Alu 1 299 -11 2569 102 8 0 chr11 27400258 27400610 -121382862 + THE1A LTR MaLR 1 355 0 8732 114 12 16 chr11 27400610 27401040 -121382432 + THE1A-int LTR MaLR 1 431 -1149 2152 117 0 0 chr11 27401040 27401351 -121382121 + AluSc SINE Alu 1 311 0 8732 114 12 16 chr11 27401351 27401554 -121381918 + THE1A-int LTR MaLR 431 633 -947 5212 82 4 11 chr11 27401554 27402247 -121381225 - LTR12 LTR ERV1 0 688 1 8732 114 12 16 chr11 27402247 27402904 -121380568 + THE1A-int LTR MaLR 633 1289 -291 4200 130 66 24 chr11 27403004 27403071 -121380401 + L1PB4 LINE L1 5347 5410 -746 1633 183 126 23 chr11 27403071 27403459 -121380013 - MSTA LTR MaLR 0 428 1 7307 177 108 9 chr11 27403459 27404961 -121378511 - MSTA-int LTR MaLR 0 1651 1 2157 123 121 21 chr11 27404961 27405350 -121378122 - MSTA LTR MaLR 0 428 1 4200 130 66 24 chr11 27405350 27406058 -121377414 + L1PB4 LINE L1 5409 6156 0 351 0 0 0 chr11 27406196 27406235 -121377237 + (CA)n Simple_repeat Simple_repeat 2 40 0 677 35 0 0 chr11 27406355 27406442 -121377030 + L1PA4 LINE L1 6066 6152 -3 1481 199 3 22 chr11 27406466 27406782 -121376690 + AluJo SINE Alu 3 312 0 274 255 29 49 chr11 27407443 27407545 -121375927 + MIR SINE MIR 49 148 -114 732 281 8 54 chr11 27407552 27407794 -121375678 - MIR SINE MIR -14 248 18 225 0 0 0 chr11 27407820 27407845 -121375627 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 1876 142 21 0 chr11 27407849 27408130 -121375342 - AluSx SINE Alu -25 287 1 2391 105 34 0 chr11 27408954 27409306 -121374166 + THE1B LTR MaLR 1 364 0 293 276 5 153 chr11 27409370 27409566 -121373906 - MLT1K LTR MaLR 0 588 422 436 303 29 54 chr11 27409650 27410010 -121373462 - MER93a LTR ERV1 -8 395 19 259 292 85 31 chr11 27410054 27410184 -121373288 - MLT1K LTR MaLR -287 301 165 381 298 84 47 chr11 27410629 27410844 -121372628 - L1ME LINE L1 -302 5819 5597 248 398 65 57 chr11 27410953 27411322 -121372150 - L2 LINE L2 -1 3271 2900 180 0 0 0 chr11 27411709 27411729 -121371743 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 393 22 0 0 chr11 27411728 27411774 -121371698 + (CA)n Simple_repeat Simple_repeat 1 46 0 480 358 89 36 chr11 27412123 27412537 -121370935 + L2 LINE L2 2812 3247 -25 754 200 32 26 chr11 27412576 27412761 -121370711 + MER5A DNA MER1_type 1 178 0 33 0 0 0 chr11 27412894 27412927 -121370545 + AT_rich Low_complexity Low_complexity 1 33 0 31 88 0 0 chr11 27414161 27414241 -121369231 + AT_rich Low_complexity Low_complexity 1 80 0 492 279 112 0 chr11 27416126 27416287 -121367185 + MIR SINE MIR 2 180 -82 439 253 86 48 chr11 27417472 27417658 -121365814 + MIR SINE MIR 62 254 -8 276 284 68 23 chr11 27417734 27417822 -121365650 + MIR SINE MIR 2 93 -169 322 350 103 58 chr11 27417889 27418223 -121365249 - L1ME4a LINE L1 -94 6027 5663 1643 161 6 59 chr11 27418223 27418545 -121364927 - AluJb SINE Alu -5 307 3 322 350 103 58 chr11 27418545 27418696 -121364776 - L1ME4a LINE L1 -458 5663 5520 3666 119 41 10 chr11 27420895 27421509 -121361963 + L1MA3 LINE L1 5671 6303 -2 1150 262 150 28 chr11 27421909 27422336 -121361136 - MLT1H LTR MaLR -70 479 1 459 0 0 0 chr11 27423344 27423395 -121360077 + (TCTA)n Simple_repeat Simple_repeat 1 51 0 399 21 0 0 chr11 27423497 27423545 -121359927 + (CA)n Simple_repeat Simple_repeat 1 48 0 320 351 135 10 chr11 27425030 27425238 -121358234 - MIR SINE MIR -26 236 3 395 338 57 22 chr11 27426749 27426977 -121356495 - MIR SINE MIR -4 258 23 378 320 152 26 chr11 27427022 27427331 -121356141 - L2 LINE L2 -4 3309 2962 198 118 0 0 chr11 27427563 27427597 -121355875 + (TCTCTG)n Simple_repeat Simple_repeat 2 35 0 366 80 0 0 chr11 27428181 27428231 -121355241 + (TTCC)n Simple_repeat Simple_repeat 1 50 0 549 179 7 11 chr11 27428290 27428407 -121355065 + L1PA15 LINE L1 6047 6166 0 564 204 0 26 chr11 27428557 27428670 -121354802 + MSTB LTR MaLR 1 110 -316 443 237 59 0 chr11 27428796 27428914 -121354558 + L2 LINE L2 2401 2525 -789 180 176 0 0 chr11 27429045 27429079 -121354393 + (TATG)n Simple_repeat Simple_repeat 3 36 0 394 250 23 0 chr11 27429097 27429185 -121354287 + L2 LINE L2 3222 3311 -2 679 332 126 11 chr11 27429297 27429760 -121353712 + L2 LINE L2 2625 3149 -164 306 271 88 35 chr11 27429815 27429985 -121353487 + L2 LINE L2 3135 3313 0 402 67 0 17 chr11 27431367 27431427 -121352045 - L1PA6 LINE L1 -2 6152 6094 44629 39 4 1 chr11 27431436 27437571 -121345901 - L1PA3 LINE L1 0 6155 2 253 318 113 26 chr11 27437975 27438126 -121345346 - MIR SINE MIR -94 168 5 2204 96 7 13 chr11 27438611 27438913 -121344559 + AluSq SINE Alu 1 300 -13 336 48 0 0 chr11 27439137 27439179 -121344293 + (TG)n Simple_repeat Simple_repeat 1 42 0 246 111 0 0 chr11 27439179 27439218 -121344254 + (GA)n Simple_repeat Simple_repeat 2 40 0 321 274 178 13 chr11 27439253 27439410 -121344062 - L2 LINE L2 -15 3298 3116 839 332 65 14 chr11 27439462 27439875 -121343597 - L2 LINE L2 -370 2944 2511 2122 115 7 7 chr11 27440478 27440773 -121342699 - AluSx SINE Alu -17 295 1 2209 114 3 0 chr11 27441029 27441328 -121342144 + AluSg SINE Alu 1 300 -10 2850 13 0 0 chr11 27442676 27442986 -121340486 + AluYa5 SINE Alu 1 310 -1 933 284 64 60 chr11 27443191 27443705 -121339767 + L2 LINE L2 158 673 -2641 340 159 30 2 chr11 27443750 27443839 -121339633 + MSTB2 LTR MaLR 294 372 -3 27 49 0 0 chr11 27444188 27444229 -121339243 + AT_rich Low_complexity Low_complexity 1 41 0 1043 216 33 16 chr11 27444445 27444690 -121338782 - L1MB7 LINE L1 0 6184 5936 * 2833 209 25 32 chr11 27444684 27445298 -121338174 - L1MB7 LINE L1 -920 5226 4616 1610 136 21 100 chr11 27445298 27445628 -121337844 - AluYb8 SINE Alu -14 304 1 2833 209 25 32 chr11 27445628 27445694 -121337778 - L1MB7 LINE L1 -1530 4616 4551 566 260 33 7 chr11 27445681 27445831 -121337641 - L1M4 LINE L1 -890 5256 5103 * 401 314 114 33 chr11 27445956 27446255 -121337217 - L1M4 LINE L1 -2096 4050 3728 732 160 56 0 chr11 27446308 27446433 -121337039 + L1PA16 LINE L1 5909 6040 -126 * 7107 227 53 14 chr11 27446432 27448026 -121335446 + L1PA12 LINE L1 1 1656 -5925 3514 180 52 8 chr11 27448058 27448899 -121334573 + L1PA12 LINE L1 2433 3315 -4269 9006 60 2 0 chr11 27498940 27500118 -121283354 + L1PA12 LINE L1 3589 4769 -2815 516 366 15 26 chr11 27500220 27500493 -121282979 + L2 LINE L2 2608 2877 -437 7593 28 0 2 chr11 27500610 27501785 -121281687 + L1PA4 LINE L1 4983 6155 0 194 309 100 27 chr11 27503859 27503969 -121279503 + MIR SINE MIR 36 153 -109 363 182 0 0 chr11 27504019 27504107 -121279365 + L1MA8 LINE L1 6204 6291 0 300 232 40 72 chr11 27504596 27504721 -121278751 + MIR SINE MIR 90 210 -52 242 241 69 23 chr11 27504762 27504849 -121278623 + MIR3 SINE MIR 105 195 -13 393 22 0 0 chr11 27504933 27504979 -121278493 + (TA)n Simple_repeat Simple_repeat 2 47 0 690 111 10 0 chr11 27505454 27505553 -121277919 + L1P LINE L1 2 101 -6045 * 10636 97 7 22 chr11 27505544 27507118 -121276354 + L1P LINE L1 617 2166 -3980 2058 197 13 3 chr11 27507223 27507609 -121275863 - MSTB-int LTR MaLR -1261 390 1 2246 186 9 32 chr11 27507609 27508045 -121275427 - MSTB LTR MaLR 0 426 1 22 0 0 0 chr11 27509001 27509023 -121274449 + AT_rich Low_complexity Low_complexity 1 22 0 1819 194 53 10 chr11 27509273 27509767 -121273705 - MER69 DNA AcHobo -13 2513 1999 471 356 21 5 chr11 27509763 27509951 -121273521 - MER69 DNA AcHobo -1969 557 367 * 312 143 20 0 chr11 27509978 27510027 -121273445 - L2 LINE L2 -560 2754 2705 24 53 0 0 chr11 27510356 27510394 -121273078 + AT_rich Low_complexity Low_complexity 1 38 0 2202 183 27 27 chr11 27510864 27511350 -121272122 - L1MB3 LINE L1 -4 6179 5694 267 260 120 20 chr11 27511786 27511886 -121271586 - MER117 DNA MER1_type -45 152 43 529 311 80 9 chr11 27512337 27512562 -121270910 - HERV16 LTR ERVL -4755 241 1 619 257 98 86 chr11 27512594 27512932 -121270540 - LTR16A LTR ERVL -32 418 77 214 267 0 0 chr11 27513435 27513480 -121269992 + MIR SINE MIR 64 108 -100 2058 110 4 0 chr11 27514608 27514881 -121268591 + AluSx SINE Alu 1 274 -38 1538 115 0 5 chr11 27514982 27515191 -121268281 - AluSg SINE Alu -98 212 5 568 303 48 21 chr11 27515598 27515843 -121267629 + MIR SINE MIR 14 261 -1 396 332 78 30 chr11 27516194 27516528 -121266944 + MLT1K LTR MaLR 194 543 -45 6806 71 7 11 chr11 27516530 27516954 -121266518 + L1PA8 LINE L1 4870 5294 -878 2557 45 3 3 chr11 27516954 27517262 -121266210 + AluY SINE Alu 1 308 -3 6806 71 7 11 chr11 27517262 27518141 -121265331 + L1PA8 LINE L1 5294 6170 -2 1143 228 71 77 chr11 27518759 27519198 -121264274 - MLT2B1 LTR ERVL 0 520 85 282 240 80 57 chr11 27519433 27519608 -121263864 + L1MC/D LINE L1 5566 5744 -377 249 202 48 12 chr11 27519633 27519717 -121263755 + L1MC/D LINE L1 5796 5882 -1926 2023 115 17 3 chr11 27520317 27520605 -121262867 + AluSc SINE Alu 1 292 -17 5628 136 20 3 chr11 27520620 27521508 -121261964 - L1PA16 LINE L1 -9 6157 5255 2186 123 0 0 chr11 27521807 27522115 -121261357 - AluSc SINE Alu -1 308 1 274 349 29 16 chr11 27522947 27523077 -121260395 - MIR3 SINE MIR -48 160 28 2327 110 0 0 chr11 27523180 27523489 -121259983 + AluSg SINE Alu 1 309 -1 296 276 92 0 chr11 27523727 27523825 -121259647 + MIR3 SINE MIR 93 199 -9 228 276 58 11 chr11 27523839 27523926 -121259546 + L2 LINE L2 2037 2127 -1187 213 132 0 0 chr11 27523948 27523986 -121259486 + (GA)n Simple_repeat Simple_repeat 1 38 0 413 131 12 0 chr11 27524051 27524135 -121259337 + (TG)n Simple_repeat Simple_repeat 1 85 0 2115 256 47 104 chr11 27524150 27525187 -121258285 + L2 LINE L2 1140 2117 -1197 456 354 35 9 chr11 27525682 27525911 -121257561 + MIR SINE MIR 9 243 -19 249 33 0 0 chr11 27526424 27526454 -121257018 + (CA)n Simple_repeat Simple_repeat 1 30 0 216 286 57 0 chr11 27526454 27526524 -121256948 + L3 LINE CR1 1184 1257 -320 21 57 0 0 chr11 27526558 27526593 -121256879 + AT_rich Low_complexity Low_complexity 1 35 0 336 345 73 6 chr11 27526593 27526758 -121256714 + L3 LINE CR1 1392 1567 -10 2749 161 43 6 chr11 27528210 27528702 -121254770 - MER41E LTR ERV1 -2 510 1 217 127 0 55 chr11 27528836 27528891 -121254581 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 1913 122 10 3 chr11 27528891 27529179 -121254293 - AluSc SINE Alu -19 290 1 757 189 110 63 chr11 27529537 27529791 -121253681 + L1MA10 LINE L1 6057 6322 -12 858 272 99 84 chr11 27529861 27530859 -121252613 - HAL1 LINE L1 -79 2428 1404 2349 102 0 0 chr11 27530859 27531172 -121252300 - AluSq SINE Alu 0 313 1 858 272 99 84 chr11 27531172 27531470 -121252002 - HAL1 LINE L1 -1103 1404 1112 2328 259 71 28 chr11 27531570 27531922 -121251550 - L1ME1 LINE L1 -30 6634 6298 1835 197 78 27 chr11 27531922 27532399 -121251073 - MLT1D LTR MaLR 0 505 5 2328 259 71 28 chr11 27532399 27533483 -121249989 - L1ME1 LINE L1 -366 6298 5127 2369 77 0 0 chr11 27533483 27533782 -121249690 - AluSc SINE Alu -10 299 1 2328 259 71 28 chr11 27533782 27533869 -121249603 - L1ME1 LINE L1 -1537 5127 5045 410 299 86 30 chr11 27533907 27534104 -121249368 - L1ME1 LINE L1 -4871 1671 1464 2355 273 68 51 chr11 27534104 27535129 -121248343 - L1ME1 LINE L1 -5238 1587 545 216 0 0 0 chr11 27535189 27535213 -121248259 + (TG)n Simple_repeat Simple_repeat 2 25 0 207 257 35 9 chr11 27535220 27535333 -121248139 + (TA)n Simple_repeat Simple_repeat 1 116 0 2959 142 43 6 chr11 27535611 27536103 -121247369 + MER41E LTR ERV1 1 510 -2 39 0 0 0 chr11 27536600 27536639 -121246833 + AT_rich Low_complexity Low_complexity 1 39 0 1656 170 25 0 chr11 27537150 27537427 -121246045 + MER57A LTR ERV1 1 284 -119 31 44 0 0 chr11 27537565 27537610 -121245862 + AT_rich Low_complexity Low_complexity 1 45 0 405 329 98 31 chr11 27537999 27538285 -121245187 + HAL1b LINE L1 251 555 -793 221 269 0 30 chr11 27538910 27538977 -121244495 + CT-rich Low_complexity Low_complexity 1 65 0 2522 52 0 0 chr11 27539154 27539464 -121244008 + AluY SINE Alu 1 310 -1 194 362 153 12 chr11 27540136 27540299 -121243173 + L2 LINE L2 3087 3272 0 353 333 103 23 chr11 27541721 27541895 -121241577 - MIR SINE MIR -22 240 53 292 297 27 0 chr11 27542261 27542335 -121241137 + L2 LINE L2 3229 3304 -9 407 352 77 0 chr11 27542803 27542985 -121240487 + MIR SINE MIR 49 244 -18 463 309 111 14 chr11 27543025 27543232 -121240240 + MIR SINE MIR 11 237 -25 812 172 8 0 chr11 27543427 27543585 -121239887 - AluSg/x SINE Alu 0 303 145 410 168 35 0 chr11 27543691 27543804 -121239668 + (TA)n Simple_repeat Simple_repeat 2 118 0 220 362 80 44 chr11 27543884 27544109 -121239363 - MIR SINE MIR -15 247 16 356 287 93 0 chr11 27544190 27544298 -121239174 + L2 LINE L2 3193 3310 -3 181 344 23 76 chr11 27545396 27545527 -121237945 + MIR SINE MIR 16 139 -69 704 226 5 85 chr11 27545559 27545758 -121237714 + MIR SINE MIR 5 187 -75 * 1096 262 19 16 chr11 27545757 27546013 -121237459 + MIR SINE MIR 6 262 0 248 329 73 0 chr11 27546067 27546149 -121237323 - L2 LINE L2 -36 3236 3149 403 256 181 23 chr11 27546625 27546758 -121236714 + MER5A DNA MER1_type 30 183 -6 479 280 73 13 chr11 27546813 27546963 -121236509 - MER5B DNA MER1_type -19 159 1 2241 53 3 23 chr11 27548391 27548693 -121234779 - AluY SINE Alu -15 296 1 306 331 41 0 chr11 27548741 27548862 -121234610 + MIR SINE MIR 63 188 -74 315 301 160 24 chr11 27548920 27549295 -121234177 + L2 LINE L2 2454 2879 -435 266 339 197 3 chr11 27549345 27549634 -121233838 + L2 LINE L2 2969 3313 0 411 38 0 0 chr11 27549944 27549997 -121233475 + (TA)n Simple_repeat Simple_repeat 2 54 0 1314 231 94 24 chr11 27550028 27550581 -121232891 + MER69 DNA AcHobo 1932 2523 -3 22 56 0 0 chr11 27551586 27551622 -121231850 + AT_rich Low_complexity Low_complexity 1 36 0 686 314 0 0 chr11 27552094 27552263 -121231209 + MIR SINE MIR 67 235 -27 458 305 69 17 chr11 27552342 27552516 -121230956 + LTR16B LTR ERVL 3 185 -279 22 0 0 0 chr11 27553337 27553359 -121230113 + AT_rich Low_complexity Low_complexity 1 22 0 1846 184 51 8 chr11 27553922 27554296 -121229176 + MLT1B LTR MaLR 1 390 0 525 330 159 8 chr11 27555228 27555579 -121227893 - LTR33A LTR ERVL -4 519 116 1283 207 69 46 chr11 27555910 27556104 -121227368 - MLT1A1 LTR MaLR 0 365 177 189 0 0 0 chr11 27556104 27556125 -121227347 + (TC)n Simple_repeat Simple_repeat 2 22 0 189 0 0 0 chr11 27556124 27556145 -121227327 + (TG)n Simple_repeat Simple_repeat 2 22 0 1283 207 69 46 chr11 27556125 27556298 -121227174 - MLT1A1 LTR MaLR -188 177 10 246 327 79 10 chr11 27558435 27558536 -121224936 + MIR SINE MIR 84 191 -71 1972 97 10 68 chr11 27559191 27559499 -121223973 - AluSc SINE Alu -19 290 1 210 304 0 43 chr11 27560444 27560513 -121222959 + L2 LINE L2 3246 3311 -2 21 0 0 0 chr11 27561336 27561357 -121222115 + AT_rich Low_complexity Low_complexity 1 21 0 195 184 0 0 chr11 27561678 27561716 -121221756 + (CATA)n Simple_repeat Simple_repeat 3 40 0 866 275 15 0 chr11 27561846 27562046 -121221426 - MER20 DNA MER1_type -15 204 2 2189 75 0 14 chr11 27563295 27563587 -121219885 + AluSg SINE Alu 13 300 -10 492 345 42 29 chr11 27563851 27564233 -121219239 + L1MC4 LINE L1 4771 5157 -989 24 24 0 24 chr11 27564297 27564324 -121219148 + AT_rich Low_complexity Low_complexity 1 28 -13 2219 119 37 3 chr11 27564324 27564676 -121218796 - THE1B LTR MaLR 0 364 1 24 24 0 24 chr11 27564676 27564690 -121218782 + AT_rich Low_complexity Low_complexity 28 41 0 836 273 80 51 chr11 27564695 27564833 -121218639 + L1MC4 LINE L1 5265 5398 -2410 225 0 0 0 chr11 27564833 27564858 -121218614 + (TA)n Simple_repeat Simple_repeat 1 25 0 836 273 80 51 chr11 27564858 27565108 -121218364 + L1MC4 LINE L1 5398 5664 -2144 1807 259 114 2 chr11 27565127 27565706 -121217766 + LTR48B LTR ERV1 1 644 0 1343 300 55 25 chr11 27565759 27566293 -121217179 + L1MC4 LINE L1 7044 7608 -434 423 0 0 0 chr11 27566293 27566340 -121217132 + (CA)n Simple_repeat Simple_repeat 1 47 0 1343 300 55 25 chr11 27566340 27566549 -121216923 + L1MC4 LINE L1 7608 7809 -233 191 395 13 0 chr11 27566919 27566995 -121216477 - MIR SINE MIR -180 82 6 283 297 35 15 chr11 27566998 27567085 -121216387 - MER5A DNA MER1_type -57 132 34 2047 134 10 0 chr11 27567168 27567475 -121215997 - AluSg SINE Alu 0 310 1 263 130 19 0 chr11 27567995 27568049 -121215423 + GA-rich Low_complexity Low_complexity 2 56 0 467 348 12 6 chr11 27568196 27568360 -121215112 + MER5A DNA MER1_type 10 174 -15 269 330 102 30 chr11 27568485 27568682 -121214790 - MIR SINE MIR -41 221 11 600 284 12 12 chr11 27569422 27569584 -121213888 + MIR SINE MIR 7 168 -94 25 51 0 0 chr11 27569611 27569650 -121213822 + AT_rich Low_complexity Low_complexity 1 39 0 2233 113 27 43 chr11 27570016 27570386 -121213086 - THE1B LTR MaLR 0 364 1 26 50 0 0 chr11 27570428 27570468 -121213004 + AT_rich Low_complexity Low_complexity 1 40 0 543 346 69 4 chr11 27571082 27571313 -121212159 - MIR SINE MIR 0 262 17 583 302 143 24 chr11 27571536 27571914 -121211558 - L2 LINE L2 -2 3311 2889 23 33 0 0 chr11 27572156 27572186 -121211286 + AT_rich Low_complexity Low_complexity 1 30 0 59 46 0 0 chr11 27572249 27572336 -121211136 + AT_rich Low_complexity Low_complexity 1 87 0 389 261 77 68 chr11 27572546 27572753 -121210719 + L2 LINE L2 3082 3290 -23 201 74 0 0 chr11 27572761 27572788 -121210684 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 31 0 0 0 chr11 27573886 27573917 -121209555 + AT_rich Low_complexity Low_complexity 1 31 0 2525 53 0 0 chr11 27574476 27574780 -121208692 - AluY SINE Alu -7 304 1 23 54 0 0 chr11 27574843 27574880 -121208592 + AT_rich Low_complexity Low_complexity 1 37 0 1317 248 143 49 chr11 27574951 27575620 -121207852 + L1MC4a LINE L1 5536 6267 -1541 317 342 20 34 chr11 27576811 27576960 -121206512 - MIR SINE MIR -115 147 1 3053 96 46 4 chr11 27578668 27579126 -121204346 - L1PA13 LINE L1 -3 6160 5684 342 333 48 0 chr11 27579683 27579809 -121203663 - MIR SINE MIR -111 151 20 1430 316 51 8 chr11 27579928 27580418 -121203054 - LTR33 LTR ERVL -10 511 1 300 331 26 74 chr11 27580981 27581250 -121202222 + L2 LINE L2 3056 3311 -2 270 308 39 19 chr11 27581284 27581388 -121202084 - L2 LINE L2 -4 3309 3204 2188 143 41 0 chr11 27581484 27581827 -121201645 + MSTA LTR MaLR 72 428 0 32 67 0 0 chr11 27583094 27583154 -121200318 + AT_rich Low_complexity Low_complexity 1 60 0 436 263 34 51 chr11 27583177 27583352 -121200120 + MER66A LTR ERV1 298 469 -9 695 241 20 15 chr11 27583356 27583555 -121199917 - L1ME2 LINE L1 -282 5882 5683 1901 111 4 4 chr11 27584092 27584363 -121199109 + AluSc SINE Alu 39 309 0 342 91 0 0 chr11 27585674 27585729 -121197743 + (CA)n Simple_repeat Simple_repeat 1 55 0 5410 90 0 0 chr11 27586008 27586743 -121196729 - L1PA8 LINE L1 0 6172 5438 22 35 0 0 chr11 27587190 27587219 -121196253 + AT_rich Low_complexity Low_complexity 1 29 0 327 49 0 0 chr11 27587943 27587984 -121195488 + (CA)n Simple_repeat Simple_repeat 1 41 0 279 308 124 24 chr11 27588427 27588596 -121194876 - MIR SINE MIR -1 261 76 661 315 119 3 chr11 27589954 27590265 -121193207 - L3 LINE CR1 -102 1475 1129 185 287 45 104 chr11 27590421 27590623 -121192849 + L2 LINE L2 3107 3296 -17 225 366 20 10 chr11 27590686 27590787 -121192685 - L3 LINE CR1 -854 723 622 254 247 67 56 chr11 27591430 27591519 -121191953 - L2 LINE L2 -3 3310 3221 339 302 34 20 chr11 27592924 27593073 -121190399 + MIR SINE MIR 91 241 -21 226 384 20 20 chr11 27594143 27594294 -121189178 + MIR3 SINE MIR 49 199 -9 2585 69 3 3 chr11 27594326 27594674 -121188798 - L1PA13 LINE L1 0 6163 5816 1828 141 49 30 chr11 27595934 27596302 -121187170 + THE1C LTR MaLR 1 375 0 2135 192 41 3 chr11 27596724 27597114 -121186358 + MER47B DNA MER2_type 4 408 -10 252 326 30 37 chr11 27597148 27597283 -121186189 - MIR3 SINE MIR -41 167 34 269 190 0 155 chr11 27597775 27597891 -121185581 + MLT1J1 LTR MaLR 60 157 -289 250 62 62 0 chr11 27598088 27598136 -121185336 + CT-rich Low_complexity Low_complexity 1 51 0 27 0 0 0 chr11 27598249 27598276 -121185196 + AT_rich Low_complexity Low_complexity 1 27 0 1410 154 194 4 chr11 27598855 27599134 -121184338 - MER1B DNA MER1_type -3 336 5 2156 129 3 0 chr11 27599535 27599844 -121183628 - AluSg SINE Alu 0 310 1 230 272 248 52 chr11 27600260 27600550 -121182922 - L2 LINE L2 0 3313 2967 2297 98 0 0 chr11 27600899 27601194 -121182278 - AluSx SINE Alu -2 310 16 1582 178 128 3 chr11 27601216 27601537 -121181935 + MLT1A1 LTR MaLR 1 361 -4 313 239 0 0 chr11 27601657 27601728 -121181744 - MIR SINE MIR 0 262 192 750 331 48 30 chr11 27601958 27602108 -121181364 + L2 LINE L2 2411 2557 -757 1639 183 7 36 chr11 27602108 27602409 -121181063 - AluJb SINE Alu -20 292 1 750 331 48 30 chr11 27602409 27602693 -121180779 + L2 LINE L2 2557 2853 -461 415 83 42 10 chr11 27603455 27603551 -121179921 + (TAGA)n Simple_repeat Simple_repeat 4 102 0 550 304 97 25 chr11 27603934 27604876 -121178596 - L1MDa LINE L1 -4583 1546 532 1078 212 13 0 chr11 27604999 27605235 -121178237 + Tigger6 DNA MER2_type 1 239 -1358 2028 124 69 44 chr11 27606522 27606865 -121176607 + MER1A DNA MER1_type 5 338 -2364 2010 134 0 0 chr11 27606865 27607140 -121176332 + AluSx SINE Alu 1 275 -37 180 0 0 0 chr11 27607144 27607164 -121176308 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 2028 124 69 44 chr11 27607164 27607242 -121176230 + MER1A DNA MER1_type 340 484 -45 26 30 0 0 chr11 27608111 27608144 -121175328 + AT_rich Low_complexity Low_complexity 1 33 0 250 386 55 14 chr11 27608197 27608342 -121175130 - MIR SINE MIR -93 169 19 2045 164 16 26 chr11 27608347 27608726 -121174746 - THE1C LTR MaLR 0 375 1 315 331 75 47 chr11 27609063 27609317 -121174155 + L2 LINE L2 3052 3312 -1 2519 102 19 16 chr11 27609496 27609870 -121173602 - THE1C LTR MaLR 0 375 1 9001 135 36 44 chr11 27609870 27611462 -121172010 - THE1C-int LTR MaLR 0 1580 1 2183 135 47 16 chr11 27611462 27611826 -121171646 - THE1C LTR MaLR 0 375 1 281 159 0 29 chr11 27612473 27612542 -121170930 + GA-rich Low_complexity Low_complexity 3 69 0 205 255 0 0 chr11 27612733 27612780 -121170692 + (CA)n Simple_repeat Simple_repeat 2 48 0 26 50 0 0 chr11 27612997 27613037 -121170435 + AT_rich Low_complexity Low_complexity 1 40 0 204 97 0 0 chr11 27613214 27613245 -121170227 + (CA)n Simple_repeat Simple_repeat 1 31 0 215 245 11 0 chr11 27613259 27613353 -121170119 + CT-rich Low_complexity Low_complexity 1 95 0 2136 170 16 56 chr11 27613841 27614287 -121169185 + MSTA LTR MaLR 1 428 0 2021 161 19 0 chr11 27614287 27614648 -121168824 + MSTA-int LTR MaLR 1 368 -1283 321 98 0 20 chr11 27614653 27614704 -121168768 + MSTA-int LTR MaLR 486 535 -1116 * 2197 67 0 3 chr11 27614702 27614999 -121168473 - L1P LINE L1 -1056 5090 4795 7125 41 19 1 chr11 27614999 27615906 -121167566 + L1PA5 LINE L1 5222 6147 -7 441 0 0 0 chr11 27615906 27615955 -121167517 + (TA)n Simple_repeat Simple_repeat 1 49 0 5573 211 16 7 chr11 27615972 27617069 -121166403 + MSTA-int LTR MaLR 546 1651 0 2348 173 14 7 chr11 27617069 27617490 -121165982 + MSTA LTR MaLR 1 424 -4 1413 230 49 11 chr11 27618240 27618605 -121164867 + MLT1B LTR MaLR 1 379 -11 225 318 34 11 chr11 27618677 27618765 -121164707 + MIR SINE MIR 58 147 -61 210 358 84 0 chr11 27619018 27619113 -121164359 - L2 LINE L2 -6 3307 3205 254 250 0 42 chr11 27621479 27621575 -121161897 + L1MC4 LINE L1 6614 6705 -1337 201 176 0 0 chr11 27621575 27621609 -121161863 + (TA)n Simple_repeat Simple_repeat 2 35 0 441 0 0 0 chr11 27621781 27621830 -121161642 + (CA)n Simple_repeat Simple_repeat 1 49 0 1066 230 85 48 chr11 27622085 27622437 -121161035 + MLT1A1 LTR MaLR 1 365 0 224 333 68 26 chr11 27622615 27622732 -121160740 - MER5A DNA MER1_type -11 178 57 423 0 0 0 chr11 27623526 27623573 -121159899 + (CA)n Simple_repeat Simple_repeat 2 48 0 1178 311 61 28 chr11 27624289 27625075 -121158397 - L2 LINE L2 0 3313 2497 783 246 34 79 chr11 27625175 27625553 -121157919 + L1MC5 LINE L1 7183 7543 -418 1980 102 7 0 chr11 27625634 27625928 -121157544 - L1PA13 LINE L1 -5 6158 5863 3477 126 42 6 chr11 27625928 27626543 -121156929 + L1PA13 LINE L1 5204 5837 -331 1510 174 0 8 chr11 27626669 27626911 -121156561 - AluSx SINE Alu -69 243 4 240 236 0 28 chr11 27627591 27627663 -121155809 + (TATATG)n Simple_repeat Simple_repeat 4 73 0 201 147 0 0 chr11 27627771 27627805 -121155667 + (TA)n Simple_repeat Simple_repeat 2 35 0 202 0 29 57 chr11 27628369 27628404 -121155068 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 232 330 9 43 chr11 27629502 27629617 -121153855 + L2 LINE L2 2945 3055 -217 27 0 0 0 chr11 27629927 27629954 -121153518 + AT_rich Low_complexity Low_complexity 1 27 0 1683 141 0 0 chr11 27630663 27630946 -121152526 + L1MA5A LINE L1 6013 6295 -2 6893 60 12 0 chr11 27631554 27632883 -121150589 - L1PA7 LINE L1 -3 6151 4820 3402 99 0 4 chr11 27632884 27633387 -121150085 + L1PA7 LINE L1 4308 4808 -1338 2224 113 7 0 chr11 27633631 27633941 -121149531 + AluSq SINE Alu 1 312 -1 186 316 18 18 chr11 27635394 27635451 -121148021 - L3b LINE CR1 -5 1578 1522 266 268 186 0 chr11 27635592 27635689 -121147783 - MIR SINE MIR -102 160 46 25 0 0 0 chr11 27636242 27636267 -121147205 + AT_rich Low_complexity Low_complexity 1 25 0 1769 188 54 47 chr11 27637029 27637454 -121146018 + MSTC LTR MaLR 1 428 0 22 0 0 0 chr11 27638611 27638633 -121144839 + AT_rich Low_complexity Low_complexity 1 22 0 222 91 0 0 chr11 27639047 27639080 -121144392 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 581 238 81 23 chr11 27639114 27639286 -121144186 - MIR SINE MIR -80 182 1 390 293 43 21 chr11 27639819 27640007 -121143465 + MIR SINE MIR 71 262 0 22 0 0 0 chr11 27640183 27640205 -121143267 + AT_rich Low_complexity Low_complexity 1 22 0 256 232 30 36 chr11 27640338 27640506 -121142966 + A-rich Low_complexity Low_complexity 6 172 0 549 296 72 45 chr11 27640664 27641181 -121142291 + L1MEd LINE L1 564 1094 -5025 915 130 0 0 chr11 27641235 27641366 -121142106 + AluSg SINE Alu 1 131 -179 207 69 0 0 chr11 27641403 27641432 -121142040 + (TC)n Simple_repeat Simple_repeat 2 30 0 2356 245 138 42 chr11 27641464 27642602 -121140870 - L1MC4 LINE L1 -144 7898 6652 303 28 0 0 chr11 27642655 27642691 -121140781 + (TG)n Simple_repeat Simple_repeat 1 36 0 1483 213 33 53 chr11 27642733 27643196 -121140276 + MLT1D LTR MaLR 6 505 0 380 283 0 0 chr11 27643217 27643323 -121140149 - L1MC4 LINE L1 -1477 6565 6460 444 321 30 46 chr11 27643710 27643972 -121139500 - L2 LINE L2 -628 2686 2429 256 275 117 59 chr11 27643976 27644198 -121139274 - HAL1 LINE L1 -2125 382 148 21 0 0 0 chr11 27644256 27644277 -121139195 + AT_rich Low_complexity Low_complexity 1 21 0 2326 96 0 13 chr11 27644307 27644621 -121138851 + AluSg SINE Alu 1 310 0 191 260 0 0 chr11 27644635 27644685 -121138787 + MIR SINE MIR 213 262 0 461 284 62 25 chr11 27644814 27644976 -121138496 + L1MD2 LINE L1 5978 6145 -214 298 157 29 14 chr11 27644974 27645044 -121138428 + L1MC4a LINE L1 7659 7729 -79 * 1209 253 20 83 chr11 27645049 27645508 -121137964 + L1M4 LINE L1 8 437 -6105 811 182 41 0 chr11 27645513 27645683 -121137789 - L1M4 LINE L1 -743 5403 5227 25 31 0 0 chr11 27645809 27645841 -121137631 + AT_rich Low_complexity Low_complexity 1 32 0 186 333 23 11 chr11 27645973 27646060 -121137412 + L2 LINE L2 2594 2681 -633 204 135 0 0 chr11 27646219 27646256 -121137216 + (CA)n Simple_repeat Simple_repeat 2 38 0 425 321 63 51 chr11 27646263 27646500 -121136972 - LTR16C LTR ERVL -5 486 247 228 343 0 15 chr11 27646863 27646930 -121136542 - MLT1K LTR MaLR -362 226 161 221 405 66 21 chr11 27647432 27647690 -121135782 - L2 LINE L2 -290 2982 2717 354 344 27 38 chr11 27648712 27648898 -121134574 + MER5B DNA MER1_type 1 173 -5 319 376 44 17 chr11 27649083 27649264 -121134208 - MIR SINE MIR -49 213 28 214 273 23 34 chr11 27649391 27649479 -121133993 - L3 LINE CR1 -217 1360 1274 32 43 0 0 chr11 27650128 27650174 -121133298 + AT_rich Low_complexity Low_complexity 1 46 0 27 29 0 0 chr11 27650282 27650316 -121133156 + AT_rich Low_complexity Low_complexity 1 34 0 307 336 8 25 chr11 27650557 27650676 -121132796 - MLT1I LTR MaLR -15 394 278 25 114 0 0 chr11 27650801 27650924 -121132548 + AT_rich Low_complexity Low_complexity 1 123 0 4547 148 4 25 chr11 27651248 27651435 -121132037 - Tigger2 DNA MER2_type -623 2095 1906 369 0 0 0 chr11 27651435 27651476 -121131996 + (TG)n Simple_repeat Simple_repeat 2 42 0 4547 148 4 25 chr11 27651476 27652059 -121131413 - Tigger2 DNA MER2_type -812 1906 1341 3745 243 128 12 chr11 27652213 27653057 -121130415 - Tigger2 DNA MER2_type -1377 1341 400 204 386 63 0 chr11 27654286 27654413 -121129059 + L2 LINE L2 3138 3272 0 1505 149 34 47 chr11 27654976 27655272 -121128200 - MLT1B LTR MaLR -97 293 2 232 214 18 18 chr11 27655286 27655342 -121128130 - MIR SINE MIR -187 75 20 1790 241 98 51 chr11 27655390 27656034 -121127438 - MER76 LTR ERV -14 674 1 207 360 0 0 chr11 27656918 27656968 -121126504 + MIR SINE MIR 207 256 -6 2358 62 3 3 chr11 27658439 27658731 -121124741 + AluY SINE Alu 5 296 -15 202 325 40 66 chr11 27659284 27659435 -121124037 - MIR SINE MIR -110 152 6 1467 174 32 11 chr11 27659553 27659835 -121123637 + L1MA9 LINE L1 5500 5787 -525 2134 159 56 5 chr11 27659845 27660259 -121123213 + L1MA9 LINE L1 5877 6311 -1 1089 193 43 128 chr11 27660437 27660836 -121122636 - MLT1A1 LTR MaLR 0 365 1 223 299 26 0 chr11 27660926 27661003 -121122469 + MIR SINE MIR 58 136 -126 1915 219 85 43 chr11 27661005 27661535 -121121937 + MLT2B3 LTR ERVL 3 554 0 235 213 28 28 chr11 27661951 27662059 -121121413 + GA-rich Low_complexity Low_complexity 4 111 0 411 241 33 50 chr11 27662485 27662637 -121120835 - MER5A DNA MER1_type -1 177 29 325 147 53 40 chr11 27662837 27662912 -121120560 - MADE1 DNA Mariner 0 80 5 2305 76 10 3 chr11 27663645 27663947 -121119525 + AluSq SINE Alu 1 304 -9 315 335 53 29 chr11 27663949 27664119 -121119353 + MIR SINE MIR 28 201 -61 5816 76 64 5 chr11 27664141 27664921 -121118551 - LTR12 LTR ERV1 0 826 1 196 240 331 0 chr11 27664993 27665114 -121118358 - MIR SINE MIR -82 180 20 1930 114 4 0 chr11 27665150 27665412 -121118060 - AluSx SINE Alu -15 297 35 190 224 52 35 chr11 27667794 27667852 -121115620 - MIR SINE MIR -3 259 201 213 340 82 0 chr11 27668485 27668582 -121114890 - MIR SINE MIR -111 151 47 201 373 59 0 chr11 27669400 27669502 -121113970 - L3 LINE CR1 -18 1559 1452 2399 71 0 3 chr11 27669518 27669815 -121113657 + AluY SINE Alu 1 296 -15 25 0 0 0 chr11 27670631 27670656 -121112816 + AT_rich Low_complexity Low_complexity 1 25 0 259 315 41 6 chr11 27671548 27671710 -121111762 - MIR SINE MIR -17 191 82 24 0 0 0 chr11 27671731 27671755 -121111717 + AT_rich Low_complexity Low_complexity 1 24 0 1567 77 64 4 chr11 27671756 27671990 -121111482 - L1PA11 LINE L1 -10 6164 5917 349 223 93 45 chr11 27672354 27672521 -121110951 - MLT1G LTR MaLR 0 590 357 236 250 0 0 chr11 27672543 27672595 -121110877 - MLT1H1 LTR MaLR -503 52 1 201 289 19 0 chr11 27672758 27672810 -121110662 - MIR SINE MIR -66 142 90 1303 49 12 0 chr11 27673124 27673286 -121110186 + AluY SINE Alu 136 299 -12 180 0 0 0 chr11 27673751 27673771 -121109701 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 297 0 0 0 chr11 27673770 27673803 -121109669 + (TG)n Simple_repeat Simple_repeat 2 34 0 667 159 56 0 chr11 27675283 27675409 -121108063 + L1MA10 LINE L1 6199 6331 -3 209 266 13 51 chr11 27675863 27675942 -121107530 + L2 LINE L2 3235 3310 -3 349 191 96 32 chr11 27676806 27676900 -121106572 - MER94 DNA DNA -34 100 1 356 321 33 27 chr11 27677069 27677253 -121106219 + MIR3 SINE MIR 10 194 -14 417 276 29 53 chr11 27678098 27678307 -121105165 - ERVL LTR ERVL -5278 384 193 921 201 33 16 chr11 27678318 27678502 -121104970 + MLT2D LTR ERVL 228 414 0 * 2744 251 95 20 chr11 27678502 27679409 -121104063 - L1M4 LINE L1 -5552 990 16 3428 173 128 98 chr11 27679805 27680230 -121103242 + L1MC3 LINE L1 6666 7077 -708 283 304 22 0 chr11 27680230 27680322 -121103150 + MLT1F1 LTR MaLR 38 131 -436 3428 173 128 98 chr11 27680322 27680893 -121102579 + L1MC3 LINE L1 7077 7785 0 238 293 104 0 chr11 27681358 27681464 -121102008 + HAL1 LINE L1 1482 1598 -909 388 328 66 22 chr11 27682148 27682533 -121100939 + L1 LINE L1 2125 2544 -3602 1326 278 152 35 chr11 27682693 27683239 -121100233 + MLT2E LTR ERVL 11 620 -8 29 94 0 0 chr11 27683239 27683324 -121100148 + AT_rich Low_complexity Low_complexity 1 85 0 1572 192 36 0 chr11 27683800 27683921 -121099551 + AluJb SINE Alu 1 116 -196 255 61 0 0 chr11 27683921 27683954 -121099518 + (TAA)n Simple_repeat Simple_repeat 2 34 0 1572 192 36 0 chr11 27683954 27684113 -121099359 + AluJb SINE Alu 116 291 -21 234 328 60 45 chr11 27684681 27684815 -121098657 + MIR3 SINE MIR 10 145 -63 7177 44 18 0 chr11 27684835 27685801 -121097671 - L1PA7 LINE L1 -5 6149 5178 456 254 0 33 chr11 27685987 27686109 -121097363 + MER94 DNA DNA 1 118 -16 6586 73 31 1 chr11 27686109 27686980 -121096492 + MER11D LTR ERVK 1 897 0 663 108 0 0 chr11 27687352 27687454 -121096018 + (TAGA)n Simple_repeat Simple_repeat 2 103 0 426 356 25 6 chr11 27688553 27688716 -121094756 - MIR SINE MIR -69 193 28 246 32 0 0 chr11 27689054 27689085 -121094387 + (TTATA)n Simple_repeat Simple_repeat 2 32 0 2247 119 0 6 chr11 27689237 27689548 -121093924 - AluSc SINE Alu 0 309 1 7033 53 11 0 chr11 27690085 27691095 -121092377 + L1PA5 LINE L1 5127 6146 -8 302 287 46 76 chr11 27691543 27691780 -121091692 + MIR SINE MIR 20 249 -13 320 284 52 103 chr11 27693952 27694146 -121089326 + MIR SINE MIR 71 254 -8 199 316 26 128 chr11 27694193 27694310 -121089162 + L2 LINE L2 3137 3241 -31 467 333 31 6 chr11 27694592 27694754 -121088718 - MIR3 SINE MIR -5 203 38 357 24 0 0 chr11 27695189 27695231 -121088241 + (TTA)n Simple_repeat Simple_repeat 2 43 0 1936 113 0 60 chr11 27695233 27695534 -121087938 - AluSq SINE Alu -30 283 1 2096 128 7 0 chr11 27695590 27695879 -121087593 - AluSq SINE Alu -22 291 1 1514 166 135 0 chr11 27696274 27696533 -121086939 - AluJb SINE Alu -15 297 4 2300 39 0 68 chr11 27696679 27696989 -121086483 + AluY SINE Alu 1 289 -22 21 0 0 0 chr11 27697255 27697276 -121086196 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr11 27748451 27748480 -121034992 + AT_rich Low_complexity Low_complexity 1 29 0 359 316 37 0 chr11 27749091 27749227 -121034245 - MIR SINE MIR -100 162 22 1119 156 120 0 chr11 27749569 27749761 -121033711 + MER4E LTR ERV1 556 770 -9 241 250 0 0 chr11 27749761 27749809 -121033663 + polypyrimidine Low_complexity Low_complexity 3 50 0 4025 245 71 35 chr11 27750109 27750274 -121033198 - L1MD1 LINE L1 -307 5935 5777 225 0 0 0 chr11 27750274 27750299 -121033173 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 4025 245 71 35 chr11 27750299 27752170 -121031302 - L1MD1 LINE L1 -465 5777 3796 1555 83 28 5 chr11 27752170 27752386 -121031086 - AluY SINE Alu -3 308 88 4025 245 71 35 chr11 27752386 27752890 -121030582 - L1MD1 LINE L1 -2446 3796 3312 224 331 48 48 chr11 27753237 27753382 -121030090 + MIR SINE MIR 5 149 -113 24 67 0 0 chr11 27753483 27753528 -121029944 + AT_rich Low_complexity Low_complexity 1 45 0 940 149 7 7 chr11 27753528 27753676 -121029796 + AluJb SINE Alu 1 148 -164 523 111 49 5 chr11 27753676 27753887 -121029585 + (TA)n Simple_repeat Simple_repeat 1 220 0 2460 182 12 14 chr11 27753894 27754404 -121029068 - L1MA10 LINE L1 -13 6321 5813 370 248 96 8 chr11 27754612 27754737 -121028735 + L1MB1 LINE L1 5696 5831 -358 188 269 64 64 chr11 27755371 27755449 -121028023 - L2 LINE L2 -825 2489 2412 1062 257 91 18 chr11 27755901 27756286 -121027186 - MLT1C LTR MaLR -52 415 3 748 284 57 3 chr11 27756287 27756622 -121026850 + L1M4 LINE L1 2854 3206 -2940 190 122 20 20 chr11 27757120 27757169 -121026303 + (TA)n Simple_repeat Simple_repeat 1 49 0 180 0 0 0 chr11 27757169 27757189 -121026283 + (CA)n Simple_repeat Simple_repeat 2 21 0 625 150 38 23 chr11 27757604 27757737 -121025735 - L1MA4A LINE L1 -5 6298 6164 1557 123 34 27 chr11 27758078 27758370 -121025102 + L1MA5 LINE L1 6006 6299 -1 338 291 136 38 chr11 27758445 27758761 -121024711 + L1M4c LINE L1 2028 2374 -4010 334 280 27 0 chr11 27758766 27758841 -121024631 - LTR17 LTR ERV1 0 780 704 * 17622 63 4 6 chr11 27758815 27762905 -121020567 - HERV17 LTR ERV1 -1269 7357 1537 2227 68 0 0 chr11 27763098 27763377 -121020095 - HERV17 LTR ERV1 -6674 1952 1674 6251 131 19 0 chr11 27763452 27764351 -121019121 + THE1A-int LTR MaLR 665 1580 0 1894 152 17 20 chr11 27764351 27764707 -121018765 + THE1A LTR MaLR 1 355 0 3155 278 98 10 chr11 27764718 27766420 -121017052 + L1M4c LINE L1 2606 4457 -1925 43076 42 3 2 chr11 27766771 27772905 -121010567 - L1PA3 LINE L1 0 6155 13 308 385 18 35 chr11 27772907 27773076 -121010396 - MIR SINE MIR -80 182 17 1626 208 85 105 chr11 27773574 27774126 -121009346 - MER67A LTR ERV1 -2 541 1 304 309 20 33 chr11 27774449 27774601 -121008871 + MIR SINE MIR 76 225 -37 1803 158 10 3 chr11 27774837 27775128 -121008344 - AluSx SINE Alu -19 293 1 25 0 0 0 chr11 27775617 27775642 -121007830 + AT_rich Low_complexity Low_complexity 1 25 0 297 0 0 0 chr11 27776665 27776698 -121006774 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 257 305 37 68 chr11 27776709 27776899 -121006573 - L2 LINE L2 -32 3281 3098 310 332 115 25 chr11 27777284 27777648 -121005824 + L2 LINE L2 2915 3311 -2 333 330 165 9 chr11 27777801 27778025 -121005447 + MIR SINE MIR 1 259 -3 597 166 222 0 chr11 27779215 27779420 -121004052 + L1M4 LINE L1 5224 5470 -708 4878 150 19 33 chr11 27779970 27780888 -121002584 + L1PA16 LINE L1 5260 6164 -2 326 268 32 49 chr11 27781511 27781634 -121001838 - L1MC4 LINE L1 0 8042 7922 228 81 0 27 chr11 27781794 27781831 -121001641 - Charlie3 DNA MER1_type -2674 36 1 884 136 7 19 chr11 27781831 27781986 -121001486 - LTR8A LTR ERV1 -565 162 10 328 241 72 0 chr11 27781987 27782070 -121001402 + L1MC4 LINE L1 6615 6703 -1339 1418 256 105 58 chr11 27782076 27782148 -121001324 - L1MC4 LINE L1 -300 7742 7675 2443 43 3 30 chr11 27782148 27782447 -121001025 - AluY SINE Alu -20 291 1 1418 256 105 58 chr11 27782447 27783253 -121000219 - L1MC4 LINE L1 -367 7675 6823 1698 240 112 53 chr11 27783259 27783327 -121000145 + MER50 LTR ERV1 14 77 -657 2286 72 7 10 chr11 27783327 27783633 -120999839 + AluY SINE Alu 1 305 -6 1698 240 112 53 chr11 27783633 27784227 -120999245 + MER50 LTR ERV1 77 715 -19 1500 251 82 95 chr11 27784256 27785458 -120998014 - L1MC4a LINE L1 -1067 6741 5555 3273 125 17 2 chr11 27785494 27786016 -120997456 + MER51C LTR ERV1 1 515 -125 2310 113 0 6 chr11 27787151 27787462 -120996010 - AluSx SINE Alu -3 309 1 2589 174 24 2 chr11 27787674 27788129 -120995343 + LTR32 LTR ERVL 7 471 0 738 183 0 0 chr11 27788179 27788305 -120995167 - FLAM_C SINE Alu -10 133 8 851 247 13 26 chr11 27788450 27788677 -120994795 + MER58A DNA MER1_type 1 224 0 242 145 65 32 chr11 27788912 27788974 -120994498 - MLT1F LTR MaLR -212 330 267 358 264 159 50 chr11 27790303 27790462 -120993010 - MIR SINE MIR -15 247 64 1626 181 144 5 chr11 27790462 27790838 -120992634 + MSTA LTR MaLR 1 428 0 358 264 159 50 chr11 27790838 27790860 -120992612 - MIR SINE MIR -198 64 46 322 353 33 20 chr11 27791198 27791348 -120992124 + MIR SINE MIR 41 192 -70 200 229 243 0 chr11 27792554 27792624 -120990848 + MIR SINE MIR 68 154 -108 559 302 40 24 chr11 27792663 27792915 -120990557 + MIR SINE MIR 2 257 -5 199 258 16 16 chr11 27792947 27793009 -120990463 + MIR SINE MIR 201 262 0 2090 136 3 7 chr11 27793247 27793557 -120989915 + AluSx SINE Alu 1 309 -3 436 211 100 22 chr11 27793722 27793902 -120989570 - LTR37A LTR ERV1 -9 417 224 1881 147 91 90 chr11 27793972 27794583 -120988889 + MER4D LTR ERV1 1 725 -54 1585 152 103 74 chr11 27794806 27795464 -120988008 + MER4D LTR ERV1 1 770 -9 254 293 120 3 chr11 27795643 27795759 -120987713 - MIR SINE MIR -65 143 28 773 226 75 5 chr11 27795764 27795963 -120987509 + MER20 DNA MER1_type 2 214 -5 639 253 96 92 chr11 27797024 27797316 -120986156 - L2 LINE L2 -619 2695 2403 21 0 0 0 chr11 27798709 27798730 -120984742 + AT_rich Low_complexity Low_complexity 1 21 0 631 316 128 44 chr11 27798929 27799474 -120983998 + MLT1G1 LTR MaLR 3 593 -2 22 0 0 0 chr11 27799831 27799853 -120983619 + AT_rich Low_complexity Low_complexity 1 22 0 511 315 86 0 chr11 27801795 27801992 -120981480 + L2 LINE L2 2087 2300 -1014 358 307 26 0 chr11 27802001 27802115 -120981357 + MLT2E LTR ERVL 10 126 -502 3502 215 38 4 chr11 27802156 27802886 -120980586 + Tigger7 DNA MER2_type 13 767 -1720 927 169 55 0 chr11 27802889 27803072 -120980400 + Tigger7 DNA MER2_type 2118 2310 -177 246 65 0 194 chr11 27803074 27803105 -120980367 - MADE1 DNA Mariner -30 50 35 3143 91 31 0 chr11 27803105 27803556 -120979916 - L1PA8 LINE L1 -1 6171 5707 246 65 0 194 chr11 27803556 27803586 -120979886 - MADE1 DNA Mariner -45 35 1 258 246 212 17 chr11 27803601 27803719 -120979753 + L2 LINE L2 3172 3312 -1 279 0 0 0 chr11 27804655 27804686 -120978786 + (T)n Simple_repeat Simple_repeat 1 31 0 375 43 123 7 chr11 27805392 27805530 -120977942 + (TA)n Simple_repeat Simple_repeat 1 154 0 2151 122 0 0 chr11 27805532 27805819 -120977653 - AluSg SINE Alu -23 287 1 21 0 0 0 chr11 27806236 27806257 -120977215 + AT_rich Low_complexity Low_complexity 1 21 0 3840 146 10 60 chr11 27806336 27807064 -120976408 - LTR8 LTR ERV1 0 691 1 2243 95 0 46 chr11 27807106 27807431 -120976041 + AluSg SINE Alu 1 310 0 5195 147 18 16 chr11 27808249 27809150 -120974322 + MER4D LTR ERV1 1 903 0 774 201 0 0 chr11 27809427 27809566 -120973906 - Tigger1 DNA MER2_type 0 2418 2280 278 122 0 0 chr11 27809628 27809669 -120973803 + MSTA LTR MaLR 386 426 -2 1556 158 61 16 chr11 27809673 27809984 -120973488 - Tigger1 DNA MER2_type -105 2313 1989 1908 166 102 5 chr11 27810003 27810377 -120973095 + MSTA LTR MaLR 19 428 0 9338 149 14 27 chr11 27810378 27811855 -120971617 - Tigger1 DNA MER2_type -463 1955 500 1476 219 3 0 chr11 27811855 27812138 -120971334 - AluJo SINE Alu -22 290 7 9338 149 14 27 chr11 27812138 27812281 -120971191 - Tigger1 DNA MER2_type -1918 500 357 1908 304 64 50 chr11 27812476 27813480 -120969992 - L2 LINE L2 -1 3312 2292 1202 289 68 36 chr11 27813480 27814116 -120969356 - MLT2F LTR ERVL -3 660 5 1908 304 64 50 chr11 27814116 27814428 -120969044 - L2 LINE L2 -1021 2292 1986 22 35 0 0 chr11 27815412 27815441 -120968031 + AT_rich Low_complexity Low_complexity 1 29 0 216 0 0 0 chr11 27815503 27815527 -120967945 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 184 368 108 11 chr11 27818683 27818868 -120964604 + MIR SINE MIR 60 262 0 617 297 33 26 chr11 27819191 27819494 -120963978 + L1PA12 LINE L1 1 305 -7276 577 185 23 15 chr11 27820164 27820294 -120963178 + Charlie3 DNA MER1_type 2547 2677 -33 1134 169 169 43 chr11 27820565 27820866 -120962606 - MER2 DNA MER2_type 0 345 7 29 0 0 0 chr11 27821499 27821528 -120961944 + AT_rich Low_complexity Low_complexity 1 29 0 187 349 64 37 chr11 27822152 27822261 -120961211 + L2 LINE L2 3139 3250 -22 902 281 138 17 chr11 27822663 27823019 -120960453 - LTR40a LTR ERVL -119 400 2 34 0 0 0 chr11 27823693 27823727 -120959745 + AT_rich Low_complexity Low_complexity 1 34 0 200 258 15 76 chr11 27825010 27825076 -120958396 + L2 LINE L2 3238 3299 -14 217 313 0 73 chr11 27825680 27825776 -120957696 + MIR SINE MIR 28 116 -146 488 366 63 12 chr11 27825780 27826034 -120957438 - L2 LINE L2 -6 3266 3000 195 406 9 19 chr11 27826805 27826911 -120956561 + MIR SINE MIR 22 126 -136 256 223 43 64 chr11 27827376 27827470 -120956002 - L2 LINE L2 0 3313 3222 949 248 10 19 chr11 27827567 27827934 -120955538 + MLT1D LTR MaLR 1 319 -71 4027 127 27 53 chr11 27827934 27828250 -120955222 + L1PB4 LINE L1 5344 5667 -489 660 202 8 0 chr11 27828250 27828369 -120955103 + FLAM_C SINE Alu 1 120 -13 4027 127 27 53 chr11 27828369 27828382 -120955090 + L1PB4 LINE L1 5667 5679 -477 1858 131 45 3 chr11 27828382 27828673 -120954799 - AluSg SINE Alu -3 307 5 4027 127 27 53 chr11 27828673 27829169 -120954303 + L1PB4 LINE L1 5679 6154 -2 288 194 30 0 chr11 27829171 27829238 -120954234 + MLT1E2 LTR MaLR 558 626 0 282 212 79 30 chr11 27829245 27829410 -120954062 + (CATATA)n Simple_repeat Simple_repeat 2 174 0 342 210 118 8 chr11 27829489 27829608 -120953864 + L1MA4 LINE L1 6166 6297 -3 * 2815 208 60 32 chr11 27829602 27830342 -120953130 + L1MD1 LINE L1 5475 6234 -8 234 337 50 50 chr11 27830494 27830675 -120952797 + MIR3 SINE MIR 19 199 -9 207 167 0 0 chr11 27831674 27831710 -120951762 + CT-rich Low_complexity Low_complexity 2 37 0 1165 197 55 93 chr11 27831767 27832188 -120951284 - LTR7 LTR ERV1 -45 405 1 304 342 26 0 chr11 27832191 27832305 -120951167 + L2 LINE L2 2385 2501 -813 5057 30 0 0 chr11 27832314 27832907 -120950565 - L1PA3 LINE L1 -5 6150 5558 1253 317 80 43 chr11 27833601 27834165 -120949307 + MER45C DNA AcHobo 27 618 -335 1233 178 97 39 chr11 27834311 27834620 -120948852 + MER45B DNA AcHobo 714 1040 0 25 0 0 0 chr11 27834800 27834825 -120948647 + AT_rich Low_complexity Low_complexity 1 25 0 413 371 70 41 chr11 27835348 27835838 -120947634 - L2 LINE L2 -13 3259 2752 225 297 22 55 chr11 27835818 27835909 -120947563 + MER5A DNA MER1_type 96 183 -6 * 3484 176 33 20 chr11 27836264 27837215 -120946257 - L1MA9 LINE L1 -353 5959 4983 2372 67 6 10 chr11 27837215 27837527 -120945945 - AluY SINE Alu 0 311 1 3484 176 33 20 chr11 27837527 27837738 -120945734 - L1MA9 LINE L1 -1329 4983 4776 1798 161 26 9 chr11 27837744 27838086 -120945386 + L1MA9 LINE L1 5965 6312 0 942 63 79 0 chr11 27838949 27839076 -120944396 - MER85 DNA T2_type -2 137 1 409 298 172 5 chr11 27839719 27839917 -120943555 - MIR SINE MIR 0 262 32 560 167 0 0 chr11 27840395 27840491 -120942981 - L1MB3 LINE L1 -14 6169 6074 416 291 0 0 chr11 27840547 27840664 -120942808 - L1ME3A LINE L1 -26 6144 6028 301 312 50 18 chr11 27841833 27841959 -120941513 + MIR SINE MIR 19 143 -65 227 331 185 16 chr11 27842192 27842376 -120941096 - MIR SINE MIR 0 262 48 199 325 38 25 chr11 27842555 27842635 -120940837 - MIR SINE MIR -64 144 64 609 264 93 16 chr11 27842642 27842824 -120940648 - MER63A DNA MER1_type -9 201 6 594 233 0 0 chr11 27842940 27843073 -120940399 - L1MB1 LINE L1 -7 6161 6029 1346 226 42 0 chr11 27843476 27843763 -120939709 + MER58B DNA MER1_type 42 340 -1 245 299 28 56 chr11 27843929 27844036 -120939436 + MIR SINE MIR 19 122 -140 1442 234 50 39 chr11 27844168 27844531 -120938941 - LTR39 LTR ERV1 0 783 417 1878 204 41 22 chr11 27844811 27845539 -120937933 - LTR39 LTR ERV1 0 783 1 1335 42 0 0 chr11 27846173 27846340 -120937132 + L1PA4 LINE L1 5989 6155 0 2399 170 105 1 chr11 27846608 27847064 -120936408 - MER61D LTR ERV1 -1 500 1 203 282 84 28 chr11 27847768 27847839 -120935633 + L2 LINE L2 3186 3260 -12 1048 144 0 28 chr11 27848350 27848530 -120934942 - AluSx SINE Alu -137 175 1 31 88 0 0 chr11 27848906 27848986 -120934486 + AT_rich Low_complexity Low_complexity 1 80 0 230 246 98 0 chr11 27849347 27849408 -120934064 - MIR3 SINE MIR -38 170 104 27 29 0 0 chr11 27849750 27849784 -120933688 + AT_rich Low_complexity Low_complexity 1 34 0 283 272 117 19 chr11 27850778 27850881 -120932591 + MIR SINE MIR 116 228 -34 715 288 233 14 chr11 27851395 27851812 -120931660 + L2 LINE L2 2352 2859 -455 222 264 33 0 chr11 27851868 27851959 -120931513 + (TA)n Simple_repeat Simple_repeat 1 94 0 665 186 9 0 chr11 27852389 27852502 -120930970 - MLT1A1 LTR MaLR -251 114 1 485 287 81 34 chr11 27853855 27854064 -120929408 - MIR SINE MIR -13 249 31 221 278 99 73 chr11 27856443 27856566 -120926906 - MIR SINE MIR 0 262 131 1811 174 0 7 chr11 27856566 27856854 -120926618 - AluJb SINE Alu -22 290 5 221 278 99 73 chr11 27856854 27856921 -120926551 - MIR SINE MIR -131 131 67 325 346 20 0 chr11 27857367 27857520 -120925952 - MARNA DNA Mariner -203 383 228 1344 239 107 67 chr11 27857685 27858267 -120925205 - MER21B LTR ERV1 -133 730 126 518 283 112 19 chr11 27858984 27859189 -120924283 + MIR SINE MIR 9 232 -30 1018 235 153 31 chr11 27859377 27859730 -120923742 - MSTD LTR MaLR 0 396 1 2937 91 31 0 chr11 27860003 27860421 -120923051 + MER57B LTR ERV1 1 431 -3 668 181 24 94 chr11 27860640 27861104 -120922368 - MER4C LTR ERV1 -2 695 181 2156 103 0 0 chr11 27861104 27861419 -120922053 - AluSg SINE Alu 0 315 1 668 181 24 94 chr11 27861419 27861588 -120921884 - MER4C LTR ERV1 -516 181 2 678 259 139 5 chr11 27863058 27863274 -120920198 - MIR SINE MIR -16 246 2 187 279 118 93 chr11 27863301 27863462 -120920010 + MIR SINE MIR 31 195 -67 1426 213 60 24 chr11 27863668 27864094 -120919378 - MER89 LTR ERV1 0 559 19 228 292 67 50 chr11 27865567 27865687 -120917785 - MIR SINE MIR -50 212 91 315 352 115 16 chr11 27865879 27866061 -120917411 + MIR SINE MIR 29 228 -34 338 162 59 0 chr11 27866549 27866617 -120916855 - LTR16C LTR ERVL 0 491 420 9117 188 43 12 chr11 27867014 27869209 -120914263 + L1MA9 LINE L1 2140 4733 -1756 444 37 0 0 chr11 27869209 27869263 -120914209 + (CA)n Simple_repeat Simple_repeat 1 54 0 9117 188 43 12 chr11 27869263 27870309 -120913163 + L1MA9 LINE L1 4733 5746 -743 577 92 78 6 chr11 27870417 27870745 -120912727 + (TA)n Simple_repeat Simple_repeat 1 351 0 23 68 0 0 chr11 27870751 27870795 -120912677 + AT_rich Low_complexity Low_complexity 1 44 0 498 86 21 81 chr11 27870795 27870981 -120912491 + (TATAA)n Simple_repeat Simple_repeat 1 175 0 202 88 0 88 chr11 27870986 27871043 -120912429 + (TTATA)n Simple_repeat Simple_repeat 1 52 0 279 305 85 0 chr11 27871189 27871330 -120912142 + L1MB8 LINE L1 4067 4219 -1927 * 2462 242 15 5 chr11 27871324 27871920 -120911552 + L1MB8 LINE L1 5489 6090 -88 1561 165 59 14 chr11 27873061 27873419 -120910053 + L1MA9 LINE L1 6175 6548 0 24 0 0 0 chr11 27874730 27874754 -120908718 + AT_rich Low_complexity Low_complexity 1 24 0 2297 89 6 10 chr11 27874943 27875256 -120908216 + AluSp SINE Alu 1 312 -1 580 344 51 42 chr11 27875319 27875874 -120907598 - L2 LINE L2 0 3313 2742 198 220 237 0 chr11 27877185 27877244 -120906228 - L2 LINE L2 -1 3271 3199 219 69 0 0 chr11 27879006 27879035 -120904437 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 21 71 0 0 chr11 27879424 27879466 -120904006 + AT_rich Low_complexity Low_complexity 1 42 0 278 392 40 0 chr11 27879570 27879695 -120903777 + MER5B DNA MER1_type 1 130 -48 1958 42 0 0 chr11 27879701 27879942 -120903530 - L1PA4 LINE L1 -3 6152 5912 275 248 29 86 chr11 27880762 27880867 -120902605 - L2 LINE L2 0 3313 3215 1871 160 152 0 chr11 27880969 27881343 -120902129 + LTR47A LTR ERVL 3 433 -19 459 223 71 0 chr11 27881704 27881816 -120901656 + L2 LINE L2 2361 2480 -834 308 320 73 27 chr11 27881825 27881975 -120901497 + L2 LINE L2 3156 3312 -1 2106 103 0 0 chr11 27882021 27882322 -120901150 + AluSx SINE Alu 1 301 0 219 69 0 0 chr11 27882663 27882692 -120900780 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 361 262 98 25 chr11 27882988 27883110 -120900362 + MER5A DNA MER1_type 56 186 -3 197 65 32 0 chr11 27884521 27884552 -120898920 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 27 0 0 0 chr11 27884632 27884659 -120898813 + AT_rich Low_complexity Low_complexity 1 27 0 238 333 0 0 chr11 27885016 27885079 -120898393 - MIR SINE MIR 0 262 200 1169 216 7 29 chr11 27885765 27886043 -120897429 + MLT2D LTR ERVL 1 272 -142 264 122 0 0 chr11 27887010 27887051 -120896421 + (TCCC)n Simple_repeat Simple_repeat 4 44 0 227 307 102 30 chr11 27887126 27887292 -120896180 - MIR3 SINE MIR -26 182 5 * 480 296 129 111 chr11 27887273 27887799 -120895673 + L2 LINE L2 1132 1647 -1667 1376 193 3 56 chr11 27887799 27888105 -120895367 + AluJb SINE Alu 1 290 -22 480 296 129 111 chr11 27888105 27888144 -120895328 + L2 LINE L2 1647 1684 -1630 1666 169 43 30 chr11 27888144 27888512 -120894960 + THE1C LTR MaLR 1 373 -2 480 296 129 111 chr11 27888512 27888852 -120894620 + L2 LINE L2 1684 2054 -1260 24 32 0 0 chr11 27889481 27889512 -120893960 + AT_rich Low_complexity Low_complexity 1 31 0 672 152 190 0 chr11 27889603 27889761 -120893711 + MER53 DNA DNA 1 188 -1 226 316 71 7 chr11 27890185 27890301 -120893171 - L1MA10 LINE L1 0 6334 6219 1325 264 20 60 chr11 27890301 27890518 -120892954 - L1ME1 LINE L1 -117 6049 5825 306 0 0 0 chr11 27890518 27890552 -120892920 + (CA)n Simple_repeat Simple_repeat 1 34 0 1325 264 20 60 chr11 27890552 27890883 -120892589 - L1ME1 LINE L1 -341 5825 5523 1209 254 109 26 chr11 27890883 27891360 -120892112 + MER20B DNA MER1_type 192 713 -70 1543 236 113 19 chr11 27891360 27891821 -120891651 + MLT1D LTR MaLR 1 504 -1 1209 254 109 26 chr11 27891821 27891839 -120891633 + MER20B DNA MER1_type 713 728 -55 312 364 6 51 chr11 27892181 27892357 -120891115 - MIR SINE MIR -28 180 9 324 211 0 0 chr11 27892657 27892733 -120890739 + CT-rich Low_complexity Low_complexity 2 77 0 183 100 0 0 chr11 27894248 27894278 -120889194 + (TA)n Simple_repeat Simple_repeat 1 30 0 197 341 30 59 chr11 27895597 27895732 -120887740 + MIR SINE MIR 14 144 -118 4004 147 10 49 chr11 27895738 27896457 -120887015 - LTR8 LTR ERV1 0 691 1 2654 132 91 86 chr11 27896485 27896503 -120886969 + MER4B LTR ERV1 1 17 -593 180 0 0 0 chr11 27896503 27896523 -120886949 + (CTA)n Simple_repeat Simple_repeat 1 20 0 2654 132 91 86 chr11 27896523 27897111 -120886361 + MER4B LTR ERV1 17 610 0 26 74 0 0 chr11 27897725 27897779 -120885693 + AT_rich Low_complexity Low_complexity 1 54 0 198 331 79 24 chr11 27899114 27899241 -120884231 - MIR SINE MIR -56 206 73 21 36 0 0 chr11 27899269 27899297 -120884175 + AT_rich Low_complexity Low_complexity 1 28 0 213 319 0 66 chr11 27899478 27899569 -120883903 + L2 LINE L2 3182 3266 -6 286 328 49 41 chr11 27900836 27900958 -120882514 + MIR SINE MIR 19 141 -67 3703 191 27 18 chr11 27901418 27902241 -120881231 - L1MA8 LINE L1 -191 6100 5271 23 78 0 0 chr11 27902307 27902358 -120881114 + AT_rich Low_complexity Low_complexity 1 51 0 5848 77 0 10 chr11 27902440 27903228 -120880244 + LTR17 LTR ERV1 1 780 0 304 247 169 26 chr11 27903228 27903382 -120880090 + MIR SINE MIR 67 242 -20 21 71 0 0 chr11 27903575 27903617 -120879855 + AT_rich Low_complexity Low_complexity 1 42 0 747 209 0 7 chr11 27904495 27904648 -120878824 + MER67D LTR ERV1 4 155 -359 1821 131 0 0 chr11 27904648 27904915 -120878557 - AluSx SINE Alu -45 267 1 683 273 137 51 chr11 27904920 27905097 -120878375 - L1M4 LINE L1 -2978 3168 3008 1877 115 77 16 chr11 27905097 27905420 -120878052 - MER61A LTR ERV1 0 343 1 683 273 137 51 chr11 27905420 27905542 -120877930 - L1M4 LINE L1 -3138 3008 2898 635 183 51 6 chr11 27905542 27905717 -120877755 - L1MA7 LINE L1 -1 6290 6108 683 273 137 51 chr11 27905717 27906042 -120877430 - L1M4 LINE L1 -3248 2898 2489 431 200 0 53 chr11 27906343 27906438 -120877034 - AluJb SINE Alu -18 294 205 1283 57 0 0 chr11 27906474 27906632 -120876840 + AluSp/q SINE Alu 156 313 0 716 138 8 16 chr11 27906636 27906759 -120876713 - FLAM_C SINE Alu -21 122 1 211 341 65 32 chr11 27906967 27907090 -120876382 + L2 LINE L2 3164 3290 -23 38 68 0 0 chr11 27907815 27907888 -120875584 + AT_rich Low_complexity Low_complexity 1 73 0 26 0 0 0 chr11 27908770 27908796 -120874676 + AT_rich Low_complexity Low_complexity 1 26 0 380 175 25 0 chr11 27909081 27909241 -120874231 + (TA)n Simple_repeat Simple_repeat 1 164 0 24 53 0 0 chr11 27909245 27909283 -120874189 + AT_rich Low_complexity Low_complexity 1 38 0 285 208 0 14 chr11 27909295 27909367 -120874105 + L1 LINE L1 3027 3097 -3049 437 95 16 0 chr11 27909383 27909446 -120874026 - L1P4 LINE L1 -377 5789 5726 21 71 0 0 chr11 27909446 27909488 -120873984 + AT_rich Low_complexity Low_complexity 1 42 0 248 183 17 0 chr11 27909730 27909790 -120873682 + (TA)n Simple_repeat Simple_repeat 2 62 0 1686 199 94 5 chr11 27909993 27910386 -120873086 - MSTA LTR MaLR 0 428 1 272 355 44 14 chr11 27910671 27910865 -120872607 - MIR SINE MIR -51 211 13 7113 38 7 0 chr11 27911933 27912799 -120870673 - L1PA4 LINE L1 -11 6144 5273 269 156 0 0 chr11 27912926 27912971 -120870501 - MLT2A2 LTR ERVL -10 443 399 332 167 14 0 chr11 27912971 27913043 -120870429 + (TA)n Simple_repeat Simple_repeat 1 73 0 435 139 14 0 chr11 27913052 27913124 -120870348 + MLT2A2 LTR ERVL 341 413 -40 212 184 0 0 chr11 27913168 27913206 -120870266 + (TA)n Simple_repeat Simple_repeat 1 38 0 410 123 15 0 chr11 27913206 27913271 -120870201 + MLT2A2 LTR ERVL 341 406 -47 1838 233 24 26 chr11 27913291 27913746 -120869726 - MLT2B3 LTR ERVL -100 454 1 261 316 9 70 chr11 27913854 27913968 -120869504 + L2 LINE L2 3156 3262 -10 23 0 0 0 chr11 27914582 27914605 -120868867 + AT_rich Low_complexity Low_complexity 1 23 0 846 154 15 0 chr11 27916158 27916294 -120867178 + MLT2B2 LTR ERVL 5 142 -373 2218 89 3 13 chr11 27916562 27916865 -120866607 - AluSp SINE Alu -12 301 2 24 0 0 0 chr11 27917394 27917418 -120866054 + AT_rich Low_complexity Low_complexity 1 24 0 1953 157 15 15 chr11 27917777 27918114 -120865358 - MER1B DNA MER1_type 0 337 1 306 0 0 0 chr11 27918306 27918340 -120865132 + (ATG)n Simple_repeat Simple_repeat 2 35 0 499 47 0 0 chr11 27918594 27918658 -120864814 - L1PA16 LINE L1 -6 6160 6097 10987 215 25 4 chr11 27918659 27921173 -120862299 - L1PA16 LINE L1 -106 6060 3459 211 70 23 23 chr11 27921173 27921216 -120862256 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 10987 215 25 4 chr11 27921216 27922181 -120861291 - L1PA16 LINE L1 -2707 3459 2516 1257 86 0 0 chr11 27922282 27922444 -120861028 + AluY SINE Alu 137 298 -13 318 276 86 43 chr11 27922660 27922776 -120860696 - L2 LINE L2 -9 3263 3143 698 160 88 0 chr11 27922878 27923003 -120860469 + AluJb SINE Alu 1 136 -176 2550 55 0 0 chr11 27923003 27923311 -120860161 + AluY SINE Alu 1 308 -3 345 303 99 18 chr11 27923434 27923655 -120859817 - L1ME LINE L1 -616 5505 5267 261 115 173 0 chr11 27923877 27923929 -120859543 + HsTC2 DNA Tc2 3 63 -1835 737 238 72 38 chr11 27924047 27924432 -120859040 + MLT1J2 LTR MaLR 31 445 -1 1029 161 0 0 chr11 27924728 27924883 -120858589 - AluSg/x SINE Alu -23 287 133 273 119 0 0 chr11 27924883 27924925 -120858547 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 1780 157 68 106 chr11 27925042 27925133 -120858339 - LTR8 LTR ERV1 -167 524 431 2144 129 3 0 chr11 27925133 27925436 -120858036 - AluSx SINE Alu -5 307 4 1780 157 68 106 chr11 27925436 27925873 -120857599 - LTR8 LTR ERV1 -260 431 16 2383 65 7 0 chr11 27925881 27926173 -120857299 - AluSq SINE Alu -19 294 1 495 314 43 0 chr11 27926178 27926363 -120857109 + L2 LINE L2 2550 2742 -572 5811 254 32 25 chr11 27926557 27928668 -120854804 - L1PA12 LINE L1 -2314 5270 3177 370 164 0 0 chr11 27928668 27928729 -120854743 + AluS SINE Alu 1 61 -247 1987 121 32 0 chr11 27928672 27928952 -120854520 + AluSc SINE Alu 5 293 -16 5811 254 32 25 chr11 27928729 27928973 -120854499 - L1PA12 LINE L1 -4407 3177 3117 300 91 0 0 chr11 27928973 27929017 -120854455 + (TG)n Simple_repeat Simple_repeat 1 44 0 5811 254 32 25 chr11 27929017 27929437 -120854035 - L1PA12 LINE L1 -4467 3117 2702 1012 313 38 58 chr11 27929435 27930481 -120852991 - L1PA12 LINE L1 -5502 2079 268 * 6214 130 34 49 chr11 27930485 27931648 -120851824 + MER52C LTR ERV1 1 1146 -132 2101 124 3 0 chr11 27932133 27932431 -120851041 - AluSx SINE Alu -13 299 1 1814 155 14 0 chr11 27934182 27934489 -120848983 + AluSx SINE Alu 1 311 0 231 364 0 0 chr11 27934814 27934891 -120848581 - MIR SINE MIR -111 151 75 787 257 39 34 chr11 27934891 27935376 -120848096 - MLT1F1 LTR MaLR -8 559 9 352 245 86 0 chr11 27936112 27936251 -120847221 + MER113 DNA MER1_type? 1 151 -370 238 359 0 31 chr11 27936300 27936428 -120847044 - L2 LINE L2 -538 2776 2653 254 373 77 12 chr11 27938284 27938453 -120845019 - MIR3 SINE MIR -5 203 24 1747 166 49 30 chr11 27938596 27938964 -120844508 - THE1C LTR MaLR 0 375 1 981 264 111 18 chr11 27939479 27939813 -120843659 - MER92C LTR ERV1 -2 552 188 1198 249 40 71 chr11 27939978 27940499 -120842973 - MLT1D LTR MaLR 0 505 1 192 294 59 0 chr11 27940512 27940563 -120842909 - MIR SINE MIR -162 100 47 202 331 99 16 chr11 27940619 27940740 -120842732 - MIR SINE MIR -5 257 127 350 349 20 7 chr11 27942305 27942457 -120841015 - MIR SINE MIR -70 192 39 2043 139 73 14 chr11 27942460 27942804 -120840668 - THE1B LTR MaLR 0 364 1 2296 146 3 3 chr11 27943142 27943511 -120839961 + MLT1B LTR MaLR 21 389 -1 246 221 205 63 chr11 27943544 27943671 -120839801 - L1ME4a LINE L1 -5 6116 5972 420 319 146 29 chr11 27944021 27944472 -120839000 - L1ME4a LINE L1 -85 6036 5533 319 328 263 21 chr11 27947185 27947618 -120835854 + L2 LINE L2 2439 2976 -338 1638 240 25 8 chr11 27948954 27949312 -120834160 - MLT1A1 LTR MaLR -1 364 1 1014 284 31 92 chr11 27950041 27950647 -120832825 - MLT1G LTR MaLR -15 575 7 1422 129 10 90 chr11 27950858 27950914 -120832558 + L1PA16 LINE L1 5881 5940 -226 2306 112 0 6 chr11 27950914 27951227 -120832245 + AluSx SINE Alu 1 311 -1 1422 129 10 90 chr11 27951227 27951480 -120831992 + L1PA16 LINE L1 5940 6165 -1 2123 132 48 28 chr11 27951918 27952275 -120831197 + THE1B LTR MaLR 1 364 0 11193 99 13 25 chr11 27952275 27953867 -120829605 + THE1B-int LTR MaLR 1 1573 -7 2121 121 48 31 chr11 27953875 27954231 -120829241 + THE1B LTR MaLR 3 364 0 728 323 47 75 chr11 27954883 27955480 -120827992 - MLT1G LTR MaLR 0 590 11 21 0 0 0 chr11 27955654 27955675 -120827797 + AT_rich Low_complexity Low_complexity 1 21 0 1475 295 77 22 chr11 27956094 27956602 -120826870 - MLT2E LTR ERVL -82 546 11 23 0 0 0 chr11 27956729 27956752 -120826720 + AT_rich Low_complexity Low_complexity 1 23 0 39 50 0 0 chr11 27957392 27957452 -120826020 + AT_rich Low_complexity Low_complexity 1 60 0 2059 116 0 20 chr11 27957455 27957748 -120825724 - AluSx SINE Alu -21 291 5 24 0 0 0 chr11 27957909 27957933 -120825539 + AT_rich Low_complexity Low_complexity 1 24 0 191 380 38 0 chr11 27958008 27958087 -120825385 + MIR SINE MIR 158 239 -23 31 26 0 0 chr11 27958722 27958760 -120824712 + AT_rich Low_complexity Low_complexity 1 38 0 2136 214 49 44 chr11 27959075 27959573 -120823899 - L1MB7 LINE L1 -200 5984 5481 351 0 0 0 chr11 27959573 27959612 -120823860 + (TAA)n Simple_repeat Simple_repeat 2 40 0 2136 214 49 44 chr11 27959612 27959767 -120823705 - L1MB7 LINE L1 -703 5481 5328 29 28 0 0 chr11 27959767 27959803 -120823669 + AT_rich Low_complexity Low_complexity 1 36 0 5588 148 37 11 chr11 27959803 27960980 -120822492 - L1PA15 LINE L1 -5 6160 4962 3491 235 20 5 chr11 27961041 27961885 -120821587 + L1P LINE L1 4084 4940 -1206 2972 127 16 14 chr11 27961897 27962270 -120821202 - L1PB3 LINE L1 0 6154 5778 294 106 0 0 chr11 27962270 27962317 -120821155 + (CA)n Simple_repeat Simple_repeat 2 48 0 2972 127 16 14 chr11 27962317 27962438 -120821034 - L1PB3 LINE L1 -376 5778 5659 368 282 78 33 chr11 27962438 27962683 -120820789 - L1MEc LINE L1 -3686 2529 2274 531 331 116 17 chr11 27962757 27963282 -120820190 - L1MEc LINE L1 -4131 2265 1689 2007 282 71 15 chr11 27963318 27964244 -120819228 + L1M4 LINE L1 3400 4377 -1769 22 0 0 0 chr11 27965417 27965439 -120818033 + AT_rich Low_complexity Low_complexity 1 22 0 184 370 12 0 chr11 27965777 27965858 -120817614 - L2 LINE L2 -5 3308 3227 221 119 24 0 chr11 27966453 27966495 -120816977 + (TG)n Simple_repeat Simple_repeat 2 44 0 6051 160 11 21 chr11 27967458 27969361 -120814111 - L1PA13 LINE L1 -15 6148 4163 * 7875 176 32 25 chr11 27969359 27970026 -120813446 + L1P LINE L1 2483 3144 -3002 441 0 0 0 chr11 27970026 27970075 -120813397 + (CA)n Simple_repeat Simple_repeat 2 50 0 7875 176 32 25 chr11 27970075 27971067 -120812405 + L1P LINE L1 3144 4154 -1992 1103 194 54 4 chr11 27971247 27971489 -120811983 - MLT1A1-int LTR MaLR -1481 254 1 1198 216 109 41 chr11 27971493 27971831 -120811641 - MLT1A1 LTR MaLR -4 361 1 1425 176 21 58 chr11 27971838 27972168 -120811304 + L1MB1 LINE L1 5844 6161 -7 208 256 0 0 chr11 27972619 27972662 -120810810 + (CATATA)n Simple_repeat Simple_repeat 5 47 0 252 244 23 0 chr11 27972664 27972750 -120810722 + L1MC4 LINE L1 6616 6703 -1339 226 282 24 0 chr11 27972722 27972807 -120810665 - L1MC4 LINE L1 -1339 6703 6617 * 327 104 0 0 chr11 27972810 27972858 -120810614 + (TATATG)n Simple_repeat Simple_repeat 2 49 0 272 261 0 0 chr11 27972861 27972949 -120810523 + L1MC4 LINE L1 6615 6702 -1340 332 232 10 0 chr11 27972951 27973050 -120810422 + (TA)n Simple_repeat Simple_repeat 1 100 0 247 113 0 48 chr11 27973051 27973113 -120810359 + LTR66 LTR ERVL 398 456 -154 282 73 0 0 chr11 27973314 27973355 -120810117 + (CA)n Simple_repeat Simple_repeat 2 42 0 278 393 52 6 chr11 27973555 27973728 -120809744 - L2 LINE L2 -575 2739 2559 21 36 0 0 chr11 27973796 27973824 -120809648 + AT_rich Low_complexity Low_complexity 1 28 0 184 331 101 50 chr11 27973824 27973872 -120809600 + MIR SINE MIR 45 89 -173 2389 151 0 3 chr11 27973872 27974236 -120809236 + THE1B LTR MaLR 1 363 -1 184 331 101 50 chr11 27974236 27974326 -120809146 + MIR SINE MIR 89 190 -72 1498 200 18 146 chr11 27974428 27974929 -120808543 + MER70A LTR ERVL 36 472 0 276 30 0 0 chr11 27975867 27975900 -120807572 + (TG)n Simple_repeat Simple_repeat 2 34 0 212 395 23 0 chr11 27975901 27975987 -120807485 + MER91B DNA MER1_type 102 189 -1 303 326 91 15 chr11 27976008 27976140 -120807332 - MIR SINE MIR -61 201 60 540 248 24 0 chr11 27976408 27976533 -120806939 - MER70A LTR ERVL 0 472 345 192 40 0 0 chr11 27978167 27978192 -120805280 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 255 248 0 105 chr11 27978656 27978761 -120804711 - L1MC4 LINE L1 -1349 6693 6600 5151 159 40 24 chr11 27979122 27980120 -120803352 + L1MA8 LINE L1 5277 6290 -1 2168 86 10 7 chr11 27980135 27980425 -120803047 + AluY SINE Alu 5 295 -16 1048 137 0 0 chr11 27980425 27980578 -120802894 + AluSq SINE Alu 134 286 -27 23 0 0 0 chr11 27980578 27980601 -120802871 + AT_rich Low_complexity Low_complexity 1 23 0 991 192 0 0 chr11 27980612 27980789 -120802683 + MLT1B LTR MaLR 163 339 -51 22 35 0 0 chr11 27980903 27980932 -120802540 + AT_rich Low_complexity Low_complexity 1 29 0 512 324 99 12 chr11 27981928 27982252 -120801220 + HAL1 LINE L1 1307 1658 -849 30 0 0 0 chr11 27982270 27982300 -120801172 + AT_rich Low_complexity Low_complexity 1 30 0 444 289 97 27 chr11 27982482 27982546 -120800926 + HAL1 LINE L1 2075 2133 -374 2126 126 0 13 chr11 27982546 27982855 -120800617 + AluSx SINE Alu 1 305 -7 444 289 97 27 chr11 27982855 27983088 -120800384 + HAL1 LINE L1 2133 2393 -114 2097 165 3 31 chr11 27985898 27986279 -120797193 - MLT1B LTR MaLR -20 370 1 1148 110 12 0 chr11 27986823 27986987 -120796485 + AluSg/x SINE Alu 145 310 0 2338 102 3 0 chr11 27987711 27988016 -120795456 + AluSx SINE Alu 1 306 -6 5056 150 2 28 chr11 27989354 27990263 -120793209 - L1PA14 LINE L1 0 6161 5276 25 0 0 0 chr11 27990980 27991005 -120792467 + AT_rich Low_complexity Low_complexity 1 25 0 199 297 161 19 chr11 27991078 27991233 -120792239 - MIR SINE MIR 0 262 86 914 19 0 0 chr11 27991271 27991378 -120792094 + L1PA4 LINE L1 6046 6152 -3 195 162 0 0 chr11 27992176 27992213 -120791259 + (TATATG)n Simple_repeat Simple_repeat 6 42 0 1777 208 45 3 chr11 27992895 27993275 -120790197 - MSTD LTR MaLR 0 396 1 207 194 32 16 chr11 27994264 27994326 -120789146 + (TA)n Simple_repeat Simple_repeat 2 64 0 6825 48 106 125 chr11 27994718 27995139 -120788333 - L1P LINE L1 -1543 4603 4176 1149 79 0 0 chr11 27995139 27995291 -120788181 - MER11B LTR ERVK 0 1236 1085 6825 48 106 125 chr11 27995291 27995945 -120787527 - L1P LINE L1 -1970 4176 3400 7116 38 12 1 chr11 27995945 27997507 -120785965 + L1PA5 LINE L1 4597 6182 0 2031 244 47 15 chr11 27997576 27998104 -120785368 - MER74B LTR ERVL -77 545 1 294 325 74 30 chr11 27998303 27998506 -120784966 - MIR SINE MIR -50 212 1 2540 70 0 0 chr11 27998975 27999303 -120784169 + L1P4 LINE L1 5448 5775 -393 193 333 98 16 chr11 27999396 27999519 -120783953 - L2 LINE L2 -223 3049 2917 424 281 39 0 chr11 28000540 28000668 -120782804 + MIR SINE MIR 86 218 -44 181 374 22 43 chr11 28000847 28000986 -120782486 + L2 LINE L2 2960 3095 -177 36 94 0 0 chr11 28001226 28001332 -120782140 + AT_rich Low_complexity Low_complexity 1 106 0 21 36 0 0 chr11 28001442 28001470 -120782002 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr11 28001787 28001829 -120781643 + AT_rich Low_complexity Low_complexity 1 42 0 5574 141 62 3 chr11 28001951 28003750 -120779722 + L1PA13 LINE L1 4140 6056 -107 1590 204 0 0 chr11 28003756 28004041 -120779431 - AluJo SINE Alu -27 285 1 23 33 0 0 chr11 28004066 28004096 -120779376 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr11 28004174 28004211 -120779261 + AT_rich Low_complexity Low_complexity 1 37 0 605 257 50 54 chr11 28005403 28005664 -120777808 - MIR SINE MIR -1 261 2 381 98 0 0 chr11 28005956 28006007 -120777465 + AluSp/q SINE Alu 229 279 -24 432 0 0 0 chr11 28006007 28006055 -120777417 + (CA)n Simple_repeat Simple_repeat 2 49 0 200 267 86 29 chr11 28006582 28006687 -120776785 + MIR SINE MIR 139 249 -13 229 268 79 47 chr11 28007308 28007435 -120776037 - MIR SINE MIR -59 203 73 524 341 91 38 chr11 28007487 28007967 -120775505 - L2 LINE L2 -27 3286 2777 355 383 81 10 chr11 28008384 28008682 -120774790 - HERVL LTR ERVL -656 4998 4680 25 0 0 0 chr11 28009566 28009591 -120773881 + AT_rich Low_complexity Low_complexity 1 25 0 609 345 32 21 chr11 28009607 28010100 -120773372 - LTR33 LTR ERVL -1 520 1 324 248 86 8 chr11 28011060 28011177 -120772295 - MER113 DNA MER1_type? -394 127 2 314 295 134 0 chr11 28012785 28012897 -120770575 - MER45A DNA AcHobo -24 154 28 780 253 0 0 chr11 28013017 28013191 -120770281 - L1 LINE L1 -1983 4163 3990 3878 186 37 6 chr11 28013193 28013976 -120769496 + L1MA10 LINE L1 5528 6334 0 1884 159 0 7 chr11 28014175 28014477 -120768995 - AluJo SINE Alu -12 300 1 215 365 71 8 chr11 28014516 28014642 -120768830 - MIR SINE MIR -110 152 19 300 282 160 26 chr11 28014964 28015120 -120768352 - MIR SINE MIR 0 262 86 27 0 0 0 chr11 28015179 28015206 -120768266 + AT_rich Low_complexity Low_complexity 1 27 0 2313 271 49 14 chr11 28015270 28015924 -120767548 + MER76 LTR ERV 12 688 0 663 284 21 58 chr11 28016248 28016483 -120766989 + L1ME LINE L1 5176 5392 -772 1829 149 22 0 chr11 28016483 28016612 -120766860 + AluSx SINE Alu 1 126 -194 234 0 0 0 chr11 28016612 28016638 -120766834 + (TAA)n Simple_repeat Simple_repeat 2 27 0 1829 149 22 0 chr11 28016638 28016822 -120766650 + AluSx SINE Alu 126 320 0 663 284 21 58 chr11 28016822 28017038 -120766434 + L1ME LINE L1 5392 5615 -549 1837 132 10 26 chr11 28017953 28018257 -120765215 - AluSx SINE Alu -13 299 1 803 206 57 6 chr11 28018324 28018521 -120764951 - MSTC LTR MaLR 0 396 219 292 240 25 16 chr11 28018522 28018643 -120764829 - L1ME LINE L1 -5079 1126 1005 997 203 4 35 chr11 28018647 28018879 -120764593 - AluJb SINE Alu -3 309 85 318 301 97 47 chr11 28018880 28019408 -120764064 - L1ME LINE L1 -5344 1052 499 238 284 67 37 chr11 28019493 28019627 -120763845 - L1ME LINE L1 -6044 352 215 243 103 0 0 chr11 28019748 28019787 -120763685 + (CA)n Simple_repeat Simple_repeat 1 39 0 23 54 0 0 chr11 28019870 28019907 -120763565 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr11 28019921 28019942 -120763530 + AT_rich Low_complexity Low_complexity 1 21 0 325 333 70 8 chr11 28021894 28022033 -120761439 - MIR SINE MIR -66 142 28 286 236 14 0 chr11 28022807 28022879 -120760593 + MLT1A1 LTR MaLR 291 363 -2 4331 254 91 38 chr11 28023281 28026146 -120757326 - L1 LINE L1 -3532 2678 4 206 365 14 0 chr11 28026152 28026226 -120757246 + L2 LINE L2 2295 2369 -945 1034 324 44 33 chr11 28026274 28026793 -120756679 + L2 LINE L2 2383 2907 -407 696 223 131 0 chr11 28026801 28026976 -120756496 + MER3 DNA MER1_type 7 204 -5 621 290 101 31 chr11 28027026 28027343 -120756129 + L2 LINE L2 2973 3311 -2 438 320 70 13 chr11 28028096 28028324 -120755148 + MIR SINE MIR 13 253 -9 2027 114 40 10 chr11 28028819 28029118 -120754354 + AluSg SINE Alu 1 308 -2 970 225 35 23 chr11 28029736 28030114 -120753358 - MLT1D LTR MaLR -7 498 80 2496 111 19 6 chr11 28030114 28030473 -120752999 - THE1B LTR MaLR 0 364 1 970 225 35 23 chr11 28030473 28030549 -120752923 - MLT1D LTR MaLR -425 80 6 333 271 36 71 chr11 28030999 28031139 -120752333 - MIR SINE MIR -65 197 63 612 315 98 25 chr11 28031154 28031513 -120751959 + L2 LINE L2 993 1377 -1937 259 302 68 5 chr11 28031630 28031737 -120751735 + MIR SINE MIR 36 141 -67 855 253 10 5 chr11 28032021 28032219 -120751253 + MER58A DNA MER1_type 11 209 -15 235 363 57 8 chr11 28032234 28032358 -120751114 + MIR3 SINE MIR 27 156 -52 1477 252 84 79 chr11 28032380 28032964 -120750508 + MLT1E LTR MaLR 3 589 -4 316 223 97 29 chr11 28034419 28034522 -120748950 + MIR SINE MIR 114 223 -39 1470 182 64 42 chr11 28035420 28035750 -120747722 + MER1B DNA MER1_type 1 337 0 709 230 35 6 chr11 28036163 28036337 -120747135 + L1MD3 LINE L1 6705 6883 -1112 1234 190 36 4 chr11 28036369 28036616 -120746856 + L1MC3 LINE L1 7158 7412 -373 871 272 35 91 chr11 28036621 28037161 -120746311 - L1ME1 LINE L1 -109 6057 5548 * 41297 62 5 0 chr11 28037157 28043280 -120740192 - L1PA5 LINE L1 -6 6148 5 427 267 64 11 chr11 28043357 28043544 -120739928 - L1ME1 LINE L1 -1333 4813 4617 1310 228 111 8 chr11 28043603 28043948 -120739524 + MSTD LTR MaLR 1 382 -9 441 0 0 0 chr11 28043948 28043997 -120739475 + (CA)n Simple_repeat Simple_repeat 2 50 0 5323 265 71 25 chr11 28044011 28045638 -120737834 + MSTD-int LTR MaLR 16 1716 -19 1500 218 63 24 chr11 28045656 28046037 -120737435 + MSTD LTR MaLR 1 396 0 367 240 81 47 chr11 28046038 28046296 -120737176 - L1ME1 LINE L1 -1592 4554 4288 798 269 34 57 chr11 28046370 28046430 -120737042 - L1ME1 LINE L1 -2793 3353 3293 2385 71 3 7 chr11 28046430 28046739 -120736733 - AluY SINE Alu -3 308 1 798 269 34 57 chr11 28046739 28046981 -120736491 - L1ME1 LINE L1 -2853 3293 3064 1467 234 0 0 chr11 28046981 28047290 -120736182 - AluJo SINE Alu 0 309 1 798 269 34 57 chr11 28047290 28047491 -120735981 - L1ME1 LINE L1 -3082 3064 2860 715 284 53 9 chr11 28047528 28047849 -120735623 - L1ME1 LINE L1 -3380 2766 2432 540 306 12 12 chr11 28048535 28048708 -120734764 + MER5B DNA MER1_type 1 173 -5 296 302 216 7 chr11 28048719 28048858 -120734614 - MIR SINE MIR -65 197 30 233 250 36 18 chr11 28049384 28049440 -120734032 + MIR SINE MIR 6 62 -200 2318 137 72 5 chr11 28051133 28051534 -120731938 - MSTA LTR MaLR 0 428 1 5111 172 44 0 chr11 28051536 28052419 -120731053 - MSTA-int LTR MaLR -2 1649 728 2949 181 48 0 chr11 28052417 28052959 -120730513 - MSTA-int LTR MaLR -1083 568 1 * 2254 179 33 12 chr11 28052959 28053378 -120730094 - MSTA LTR MaLR 0 428 1 260 398 16 0 chr11 28054796 28054924 -120728548 - MIR3 SINE MIR -5 203 74 35 0 0 0 chr11 28055254 28055289 -120728183 + AT_rich Low_complexity Low_complexity 1 35 0 2273 133 10 31 chr11 28055290 28055673 -120727799 - THE1C LTR MaLR 0 375 1 21 57 0 0 chr11 28055701 28055736 -120727736 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr11 28055790 28055819 -120727653 + AT_rich Low_complexity Low_complexity 1 29 0 209 330 134 0 chr11 28057433 28057545 -120725927 + MIR SINE MIR 4 130 -132 22 35 0 0 chr11 28057557 28057586 -120725886 + AT_rich Low_complexity Low_complexity 1 29 0 2010 151 0 19 chr11 28057695 28058007 -120725465 - AluSx SINE Alu -6 306 1 213 39 0 0 chr11 28058026 28058052 -120725420 + (T)n Simple_repeat Simple_repeat 1 26 0 6290 38 7 1 chr11 28058451 28059272 -120724200 - L1PA4 LINE L1 -723 5432 4608 6137 33 0 0 chr11 28059272 28059988 -120723484 + L1PA4 LINE L1 5428 6152 -3 381 258 8 76 chr11 28060505 28060637 -120722835 - MER5A DNA MER1_type 0 189 67 1942 136 14 49 chr11 28062398 28062765 -120720707 - L1MA4A LINE L1 -299 6004 5651 1339 166 21 21 chr11 28062765 28063047 -120720425 + L1MA4A LINE L1 6011 6293 -10 21 36 0 0 chr11 28063539 28063567 -120719905 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 28064869 28064890 -120718582 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr11 28064948 28064971 -120718501 + AT_rich Low_complexity Low_complexity 1 23 0 4613 164 11 19 chr11 28065389 28066288 -120717184 - L1MB3 LINE L1 -7 6176 5285 2199 109 3 3 chr11 28066304 28066608 -120716864 - AluSq SINE Alu -9 304 1 271 140 18 18 chr11 28066738 28066795 -120716677 + L1MB2 LINE L1 6108 6164 -7 4470 50 7 0 chr11 28066863 28067425 -120716047 - L1PA4 LINE L1 0 6155 5590 2256 64 10 17 chr11 28067665 28067961 -120715511 - AluY SINE Alu -17 294 1 350 205 51 0 chr11 28068372 28068450 -120715022 - MER103 DNA DNA -15 151 70 227 264 69 0 chr11 28070218 28070290 -120713182 - MIR SINE MIR -79 129 53 288 0 0 0 chr11 28070497 28070529 -120712943 + (TG)n Simple_repeat Simple_repeat 2 33 0 1994 124 20 7 chr11 28070674 28070973 -120712499 + AluSq SINE Alu 5 307 -6 2211 118 0 0 chr11 28071464 28071769 -120711703 - AluSc SINE Alu -4 305 1 208 256 0 0 chr11 28072905 28072948 -120710524 + (CATATA)n Simple_repeat Simple_repeat 5 47 0 252 244 23 0 chr11 28072950 28073036 -120710436 + L1MC4 LINE L1 6616 6703 -1339 226 282 24 0 chr11 28073008 28073093 -120710379 - L1MC4 LINE L1 -1339 6703 6617 * 327 104 0 0 chr11 28073096 28073144 -120710328 + (TATATG)n Simple_repeat Simple_repeat 2 49 0 249 270 0 0 chr11 28073147 28073236 -120710236 + L1MC4 LINE L1 6615 6703 -1339 393 133 67 0 chr11 28073242 28073332 -120710140 + (TATATG)n Simple_repeat Simple_repeat 5 100 0 230 245 0 43 chr11 28073333 28073427 -120710045 + L1MC4 LINE L1 6614 6703 -1339 261 210 0 0 chr11 28073427 28073489 -120709983 + (TA)n Simple_repeat Simple_repeat 2 63 0 268 276 23 0 chr11 28073490 28073577 -120709895 + L1MC4 LINE L1 6615 6703 -1339 241 267 23 0 chr11 28073579 28073665 -120709807 - L1MC4 LINE L1 -1341 6701 6614 236 258 0 22 chr11 28073622 28073711 -120709761 + L1MC4 LINE L1 6617 6703 -1339 * 257 250 24 0 chr11 28073718 28073802 -120709670 + L1MC4 LINE L1 6617 6702 -1340 214 205 0 0 chr11 28073803 28073842 -120709630 + (TA)n Simple_repeat Simple_repeat 2 40 0 247 113 0 48 chr11 28073843 28073905 -120709567 + LTR66 LTR ERVL 398 456 -154 282 73 0 0 chr11 28074106 28074147 -120709325 + (CA)n Simple_repeat Simple_repeat 2 42 0 278 393 52 6 chr11 28074347 28074520 -120708952 - L2 LINE L2 -575 2739 2559 21 36 0 0 chr11 28074588 28074616 -120708856 + AT_rich Low_complexity Low_complexity 1 28 0 184 331 101 50 chr11 28074616 28074664 -120708808 + MIR SINE MIR 45 89 -173 2389 151 0 3 chr11 28074664 28075028 -120708444 + THE1B LTR MaLR 1 363 -1 184 331 101 50 chr11 28075028 28075118 -120708354 + MIR SINE MIR 89 190 -72 1498 200 18 146 chr11 28075220 28075721 -120707751 + MER70A LTR ERVL 36 472 0 276 30 0 0 chr11 28076659 28076692 -120706780 + (TG)n Simple_repeat Simple_repeat 2 34 0 212 395 23 0 chr11 28076693 28076779 -120706693 + MER91B DNA MER1_type 102 189 -1 2083 148 54 36 chr11 28077197 28077728 -120705744 + MLT2A2 LTR ERVL 1 554 0 2003 135 26 52 chr11 28078044 28078429 -120705043 - THE1C LTR MaLR 0 375 1 8258 110 4 4 chr11 28079542 28080765 -120702707 - L1P3 LINE L1 -5176 1285 63 3768 133 183 91 chr11 28081532 28082873 -120700599 - pTR5 LTR ERV1 -23 2039 35 216 182 0 0 chr11 28083218 28083262 -120700210 + (TA)n Simple_repeat Simple_repeat 1 44 0 2114 112 0 26 chr11 28083286 28083599 -120699873 - AluSc SINE Alu -4 305 1 1229 255 48 82 chr11 28083762 28084257 -120699215 + MLT2B1 LTR ERVL 1 478 -42 378 0 0 0 chr11 28084257 28084299 -120699173 + (CA)n Simple_repeat Simple_repeat 2 43 0 1229 255 48 82 chr11 28084299 28084341 -120699131 + MLT2B1 LTR ERVL 478 520 0 269 307 123 6 chr11 28085352 28085515 -120697957 + LTR16A LTR ERVL 7 188 -262 312 245 51 20 chr11 28087082 28087180 -120696292 + L2 LINE L2 2845 2945 -369 655 352 65 23 chr11 28087267 28087835 -120695637 + L1M2b LINE L1 52 643 -6566 2095 277 35 26 chr11 28088801 28090146 -120693326 + L1PA15-16 LINE L1 806 2308 -4541 1774 159 0 116 chr11 28090164 28090517 -120692955 - Charlie3 DNA MER1_type -25 2685 1 1553 123 4 0 chr11 28090868 28091119 -120692353 - L1P LINE L1 -2086 4060 3809 470 91 13 0 chr11 28092857 28092934 -120690538 + (TAGA)n Simple_repeat Simple_repeat 3 80 0 439 325 80 10 chr11 28092957 28093157 -120690315 - MIR SINE MIR -1 261 48 24 32 0 0 chr11 28093508 28093539 -120689933 + AT_rich Low_complexity Low_complexity 1 31 0 883 356 45 16 chr11 28093731 28094248 -120689224 + MLT2E LTR ERVL 47 578 -50 25 0 0 0 chr11 28094398 28094423 -120689049 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr11 28094814 28094844 -120688628 + AT_rich Low_complexity Low_complexity 1 30 0 807 233 90 17 chr11 28096036 28096489 -120686983 + MLT1E1 LTR MaLR 59 631 -22 189 171 0 0 chr11 28096682 28096717 -120686755 + GA-rich Low_complexity Low_complexity 3 37 0 275 170 0 0 chr11 28097431 28097478 -120685994 - LTR28 LTR ERV1 -665 355 309 * 375 250 34 40 chr11 28097453 28097645 -120685827 - MER52A LTR ERV1 -600 747 1 7771 247 33 34 chr11 28097646 28101978 -120681494 - L1PA12 LINE L1 -2208 5376 1539 664 230 29 25 chr11 28102528 28102732 -120680740 - MER3 DNA MER1_type 0 209 5 249 163 0 0 chr11 28102904 28102953 -120680519 + (TG)n Simple_repeat Simple_repeat 2 50 0 952 265 91 56 chr11 28103079 28103624 -120679848 - MLT1F1 LTR MaLR -2 565 1 329 343 48 0 chr11 28103687 28103833 -120679639 - MIR SINE MIR 0 262 110 6490 256 9 10 chr11 28104078 28105072 -120678400 + L1P LINE L1 2508 3500 -2646 2127 101 40 0 chr11 28105072 28105369 -120678103 + AluY SINE Alu 1 309 -2 6490 256 9 10 chr11 28105369 28106342 -120677130 + L1P LINE L1 3500 4473 -1673 * 41002 49 3 2 chr11 28106341 28112123 -120671349 + L1PA4 LINE L1 3 5789 -366 1009 47 0 0 chr11 28112123 28112250 -120671222 + L1PA4 LINE L1 6020 6147 -8 2948 62 3 3 chr11 28112264 28112650 -120670822 + L1PA4 LINE L1 5770 6155 0 3060 226 6 6 chr11 28112650 28113441 -120670031 + L1P LINE L1 4461 5251 -895 1418 146 45 0 chr11 28113541 28113787 -120669685 + L1PA15 LINE L1 5907 6163 -2 183 42 0 0 chr11 28114288 28114312 -120669160 + (CCAA)n Simple_repeat Simple_repeat 1 24 0 325 287 43 0 chr11 28114781 28114875 -120668597 + MIR SINE MIR 44 141 -67 347 260 101 48 chr11 28114906 28115114 -120668358 + L1MC4a LINE L1 5671 5889 -1919 268 303 33 20 chr11 28115370 28115522 -120667950 - L1MC5 LINE L1 -427 7534 7381 2569 132 51 8 chr11 28115527 28115915 -120667557 + Tigger3(Golem) DNA MER2_type 2226 2641 -388 1496 198 30 17 chr11 28115915 28116213 -120667259 + AluJo SINE Alu 1 302 -10 2569 132 51 8 chr11 28116213 28116318 -120667154 + Tigger3(Golem) DNA MER2_type 2641 2740 -289 1057 176 21 0 chr11 28116323 28116510 -120666962 - AluSg/x SINE Alu -1 311 121 1141 182 112 0 chr11 28116510 28116768 -120666704 + Tigger3(Golem) DNA MER2_type 2742 3028 -1 2362 239 28 42 chr11 28117479 28118228 -120665244 - L1MB7 LINE L1 -6 6178 5441 2316 107 7 0 chr11 28118228 28118536 -120664936 - AluSp SINE Alu -3 310 1 2362 239 28 42 chr11 28118536 28118610 -120664862 - L1MB7 LINE L1 -743 5441 5367 467 224 0 0 chr11 28118613 28118725 -120664747 - L1PA16 LINE L1 -3 6153 6042 456 253 20 35 chr11 28118729 28118752 -120664720 - L1MB7 LINE L1 -2123 4023 4001 2142 144 14 27 chr11 28118752 28119121 -120664351 + THE1B LTR MaLR 1 364 0 456 253 20 35 chr11 28119121 28119299 -120664173 - L1MB7 LINE L1 -2145 4001 3825 284 350 51 13 chr11 28120700 28120857 -120662615 - MIR SINE MIR -34 228 66 1818 187 39 0 chr11 28121182 28121546 -120661926 - L1MB1 LINE L1 0 6168 5791 308 368 96 6 chr11 28121740 28122085 -120661387 + L2 LINE L2 1698 2073 -1241 284 316 23 38 chr11 28122337 28122470 -120661002 + MLT1J LTR MaLR 287 417 -94 218 381 0 12 chr11 28122833 28122917 -120660555 + L2 LINE L2 3180 3262 -10 690 328 3 24 chr11 28123041 28123328 -120660144 - LTR16A LTR ERVL 0 450 170 207 0 0 0 chr11 28124234 28124257 -120659215 + (TA)n Simple_repeat Simple_repeat 1 23 0 21 36 0 0 chr11 28125427 28125455 -120658017 + AT_rich Low_complexity Low_complexity 1 28 0 181 319 43 0 chr11 28126234 28126303 -120657169 - MIR SINE MIR -59 149 78 24 32 0 0 chr11 28126836 28126867 -120656605 + AT_rich Low_complexity Low_complexity 1 31 0 1786 166 50 73 chr11 28127096 28127591 -120655881 + L1MB8 LINE L1 5497 5980 -198 22 0 0 0 chr11 28127630 28127652 -120655820 + AT_rich Low_complexity Low_complexity 1 22 0 183 389 0 0 chr11 28127938 28128028 -120655444 + L3 LINE CR1 1488 1577 0 220 306 71 12 chr11 28128575 28128660 -120654812 + L2 LINE L2 3161 3250 -22 3572 172 20 20 chr11 28128953 28129085 -120654387 - L1MC1 LINE L1 -3 6330 6199 1708 195 33 12 chr11 28129085 28129419 -120654053 + MER2 DNA MER2_type 1 341 -3 3572 172 20 20 chr11 28129419 28129997 -120653475 - L1MC1 LINE L1 -133 6200 5620 313 328 71 94 chr11 28130065 28130587 -120652885 + L2 LINE L2 2804 3313 0 735 302 43 82 chr11 28131714 28131978 -120651494 + L2 LINE L2 2775 3013 -300 612 63 74 11 chr11 28131978 28132073 -120651399 - L1PA2 LINE L1 -1 6154 6054 735 302 43 82 chr11 28132073 28132338 -120651134 + L2 LINE L2 3013 3287 -26 288 0 0 0 chr11 28132752 28132784 -120650688 + (CA)n Simple_repeat Simple_repeat 2 33 0 198 0 0 0 chr11 28133103 28133125 -120650347 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 182 191 21 0 chr11 28133265 28133312 -120650160 + CT-rich Low_complexity Low_complexity 2 49 0 505 338 70 5 chr11 28133618 28133819 -120649653 - MIR SINE MIR -20 242 29 1154 211 13 4 chr11 28135683 28135911 -120647561 + MLT2B3 LTR ERVL 2 231 -323 375 244 17 52 chr11 28135973 28136088 -120647384 + MLT2B3 LTR ERVL 236 346 -208 1533 219 62 21 chr11 28136496 28136916 -120646556 - L1MB7 LINE L1 0 6184 5748 28278 108 9 8 chr11 28136947 28142142 -120641330 - L1PA7 LINE L1 0 6154 957 419 337 24 12 chr11 28142588 28142757 -120640715 + MLT1H1 LTR MaLR 1 171 -384 2150 115 0 10 chr11 28142757 28143062 -120640410 + AluSx SINE Alu 1 302 -10 24 67 0 0 chr11 28143179 28143224 -120640248 + AT_rich Low_complexity Low_complexity 1 45 0 252 339 81 40 chr11 28144203 28144451 -120639021 - L2 LINE L2 -40 3273 3016 189 374 32 52 chr11 28144489 28144644 -120638828 - L2 LINE L2 -380 2933 2783 318 294 33 0 chr11 28144671 28144763 -120638709 - L2 LINE L2 -690 2624 2530 22 0 0 0 chr11 28145035 28145057 -120638415 + AT_rich Low_complexity Low_complexity 1 22 0 729 161 49 0 chr11 28145132 28145275 -120638197 - L1MA7 LINE L1 -183 6108 5959 458 348 34 0 chr11 28145275 28145453 -120638019 - LTR33 LTR ERVL -337 184 1 325 325 22 61 chr11 28145798 28146026 -120637446 + L1ME1 LINE L1 53 271 -5774 1395 261 66 23 chr11 28146639 28147152 -120636320 + L1ME1 LINE L1 4104 4638 -1926 3004 161 10 44 chr11 28147389 28147997 -120635475 + L1MC2 LINE L1 5754 6343 -1 854 269 48 6 chr11 28148013 28148325 -120635147 + L1ME1 LINE L1 4991 5315 -1249 14178 31 2 0 chr11 28148336 28150808 -120632664 - L1PA4 LINE L1 -3 6152 3673 222 279 16 0 chr11 28151170 28151231 -120632241 + (CA)n Simple_repeat Simple_repeat 1 62 0 1464 284 33 2 chr11 28151232 28151718 -120631754 + L1ME1 LINE L1 5695 6195 -389 906 160 19 87 chr11 28151762 28151968 -120631504 + AluSg/x SINE Alu 121 312 0 610 231 75 9 chr11 28151975 28152319 -120631153 + L1ME1 LINE L1 6184 6579 -5 35 0 0 0 chr11 28152594 28152629 -120630843 + AT_rich Low_complexity Low_complexity 1 35 0 387 274 47 28 chr11 28153143 28153249 -120630223 + MIR SINE MIR 39 146 -62 1310 88 0 0 chr11 28154318 28154489 -120628983 - AluY SINE Alu -10 301 131 2158 195 25 7 chr11 28155680 28156115 -120627357 - L1MA9 LINE L1 -314 5998 5556 497 192 96 8 chr11 28156638 28156763 -120626709 + L1MA3 LINE L1 4548 4683 -1463 1749 243 60 19 chr11 28156821 28156907 -120626565 + L1 LINE L1 4547 4628 -1518 2468 56 3 3 chr11 28156907 28157213 -120626259 + AluY SINE Alu 1 306 -5 1749 243 60 19 chr11 28157213 28157695 -120625777 + L1 LINE L1 4628 5138 -1008 258 32 0 0 chr11 28157703 28157734 -120625738 + (TG)n Simple_repeat Simple_repeat 1 31 0 3713 185 31 42 chr11 28157754 28158934 -120624538 - L1M2 LINE L1 -602 5689 4519 3166 167 41 35 chr11 28158931 28159594 -120623878 + L1MA3 LINE L1 5618 6284 -21 * 364 188 154 0 chr11 28159676 28159793 -120623679 + L1 LINE L1 5172 5306 -840 25 0 0 0 chr11 28159999 28160024 -120623448 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr11 28160109 28160140 -120623332 + AT_rich Low_complexity Low_complexity 1 31 0 434 236 63 12 chr11 28160205 28160369 -120623103 + L1ME2 LINE L1 5998 6331 -3 1167 213 8 4 chr11 28162643 28162883 -120620589 - MLT1B LTR MaLR -149 241 1 189 74 0 0 chr11 28163257 28163284 -120620188 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 221 0 0 33 chr11 28164289 28164319 -120619153 + (TTTTA)n Simple_repeat Simple_repeat 1 29 0 5418 136 12 41 chr11 28164319 28165902 -120617570 - L1PA10 LINE L1 -21 6147 4615 203 278 14 0 chr11 28166445 28166517 -120616955 + T-rich Low_complexity Low_complexity 4 76 0 253 265 93 60 chr11 28166521 28166646 -120616826 - L1MEc LINE L1 -4317 2079 1960 1624 177 63 28 chr11 28166646 28167008 -120616464 + THE1C LTR MaLR 1 375 0 253 265 93 60 chr11 28167008 28167150 -120616322 - L1MEc LINE L1 -4436 1960 1803 195 184 0 0 chr11 28167345 28167383 -120616089 + (CATATA)n Simple_repeat Simple_repeat 1 38 0 830 189 0 13 chr11 28167388 28167547 -120615925 + MER39 LTR ERV1 534 690 -17 281 240 29 48 chr11 28167708 28167812 -120615660 + L1ME4a LINE L1 5950 6051 -70 4466 250 29 34 chr11 28168199 28170781 -120612691 + L1PA13 LINE L1 2 3101 -3696 249 197 0 0 chr11 28171110 28171186 -120612286 + (TG)n Simple_repeat Simple_repeat 2 77 0 1032 156 0 0 chr11 28171224 28171404 -120612068 + (TA)n Simple_repeat Simple_repeat 1 180 0 3837 81 4 13 chr11 28171407 28171950 -120611522 + L1PA8 LINE L1 5629 6166 -6 2083 239 58 5 chr11 28171953 28172592 -120610880 + MER45R DNA AcHobo 908 1580 -1 24 0 0 0 chr11 28176340 28176364 -120607108 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr11 28178089 28178117 -120605355 + AT_rich Low_complexity Low_complexity 1 28 0 7981 243 14 23 chr11 28178184 28180690 -120602782 - L1PBb LINE L1 -1788 4415 1933 617 113 21 10 chr11 28180690 28180787 -120602685 + MER4A LTR ERV1 1 98 -566 1682 128 201 26 chr11 28180787 28181131 -120602341 + MER4A LTR ERV1 261 664 0 3303 248 34 32 chr11 28181131 28182286 -120601186 - L1PBb LINE L1 -4267 1936 691 298 315 0 0 chr11 28182273 28182365 -120601107 - L1PA15-16 LINE L1 -5286 1563 1472 * 289 355 0 0 chr11 28182365 28182458 -120601014 - L1PA15-16 LINE L1 -5286 1563 1471 267 388 32 11 chr11 28182672 28182860 -120600612 - L2 LINE L2 -427 2887 2696 8868 32 17 0 chr11 28182864 28184687 -120598785 + L1PA4 LINE L1 4293 6142 -13 257 241 46 11 chr11 28184705 28184792 -120598680 + L1ME LINE L1 5511 5600 -521 1280 78 73 5 chr11 28184792 28184983 -120598489 + L1PB1 LINE L1 5948 6151 0 2148 62 0 21 chr11 28185086 28185426 -120598046 - AluY SINE Alu 0 334 1 188 324 49 39 chr11 28185725 28185827 -120597645 + MIR SINE MIR 37 139 -69 472 296 6 31 chr11 28187034 28187193 -120596279 + MIR SINE MIR 108 262 0 496 264 108 65 chr11 28189261 28189423 -120594049 + MIR SINE MIR 1 177 -85 1636 189 0 3 chr11 28189423 28189720 -120593752 - AluJb SINE Alu -16 296 1 496 264 108 65 chr11 28189720 28189788 -120593684 + MIR SINE MIR 177 241 -21 23 0 0 0 chr11 28189816 28189839 -120593633 + AT_rich Low_complexity Low_complexity 1 23 0 457 147 0 0 chr11 28189839 28189914 -120593558 - MADE1 DNA Mariner -5 75 1 21 0 0 0 chr11 28190064 28190085 -120593387 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr11 28190184 28190220 -120593252 + AT_rich Low_complexity Low_complexity 1 36 0 281 373 31 52 chr11 28191127 28191218 -120592254 + MER91B DNA MER1_type 2 93 -97 1585 183 0 27 chr11 28191218 28191519 -120591953 - AluJb SINE Alu -19 293 1 281 373 31 52 chr11 28191519 28191620 -120591852 + MER91B DNA MER1_type 93 190 0 331 305 61 15 chr11 28192472 28192603 -120590869 - MIR SINE MIR -67 195 59 217 343 62 34 chr11 28192793 28192939 -120590533 + L2 LINE L2 2554 2703 -611 2667 216 5 26 chr11 28193463 28194029 -120589443 - MLT2B3 LTR ERVL 0 554 1 1372 224 40 63 chr11 28195890 28196444 -120587028 - MER67C LTR ERV1 0 514 1 186 224 0 0 chr11 28196508 28196557 -120586915 + C-rich Low_complexity Low_complexity 4 52 0 217 245 32 75 chr11 28196718 28196812 -120586660 + MIR SINE MIR 49 138 -124 315 0 0 0 chr11 28197990 28198025 -120585447 + (TG)n Simple_repeat Simple_repeat 1 35 0 1514 210 7 10 chr11 28199252 28199557 -120583915 + AluJb SINE Alu 1 304 -8 530 198 55 93 chr11 28199560 28199742 -120583730 - L1MA10 LINE L1 -45 6289 6115 3620 165 28 30 chr11 28199756 28200452 -120583020 - L1MA4 LINE L1 0 6300 5604 419 171 13 0 chr11 28200452 28200528 -120582944 - MADE1 DNA Mariner 0 80 4 3620 165 28 30 chr11 28200528 28200606 -120582866 - L1MA4 LINE L1 -696 5604 5527 1335 99 0 0 chr11 28200608 28200780 -120582692 + AluSq SINE Alu 1 172 -141 7528 199 31 20 chr11 28200798 28202751 -120580721 - L1MA4 LINE L1 -743 5403 3575 3254 202 55 25 chr11 28202750 28203350 -120580122 - L1MB1 LINE L1 -55 6113 5461 * 2143 182 36 5 chr11 28203350 28203763 -120579709 - MSTA LTR MaLR -2 426 1 3254 202 55 25 chr11 28203763 28204154 -120579318 - L1MB1 LINE L1 -707 5461 5083 1446 231 9 0 chr11 28204186 28204511 -120578961 + L1 LINE L1 4706 5033 -1113 30 0 0 0 chr11 28204594 28204624 -120578848 + AT_rich Low_complexity Low_complexity 1 30 0 185 364 38 38 chr11 28205510 28205694 -120577778 + L2 LINE L2 2595 2778 -536 1956 117 0 7 chr11 28206322 28206634 -120576838 + AluSg SINE Alu 1 310 0 467 228 70 13 chr11 28206693 28206851 -120576621 + L1MB4 LINE L1 6013 6179 -1 336 143 95 0 chr11 28207312 28207375 -120576097 + L1MB3 LINE L1 5712 5780 -391 719 222 28 0 chr11 28207426 28207570 -120575902 + MER74A LTR ERVL 15 162 -396 798 237 33 63 chr11 28207606 28208054 -120575418 + MER74B LTR ERVL 147 572 -50 2132 134 25 11 chr11 28208054 28208419 -120575053 + THE1C LTR MaLR 5 374 -1 798 237 33 63 chr11 28208419 28208469 -120575003 + MER74B LTR ERVL 572 622 0 1712 189 39 13 chr11 28208469 28208856 -120574616 + L1MB3 LINE L1 5787 6183 0 192 318 0 0 chr11 28209010 28209054 -120574418 + L2 LINE L2 3251 3294 -19 * 204 231 0 0 chr11 28209024 28209063 -120574409 + MIR SINE MIR 220 258 -4 1164 189 181 0 chr11 28209080 28209334 -120574138 - AluJo SINE Alu -2 300 1 322 294 13 100 chr11 28210597 28210828 -120572644 - L1MEc LINE L1 -5024 1360 1150 412 360 24 39 chr11 28210859 28211240 -120572232 - L1MEc LINE L1 -5872 691 317 27 29 0 0 chr11 28212454 28212488 -120570984 + AT_rich Low_complexity Low_complexity 1 34 0 275 357 26 31 chr11 28212521 28212868 -120570604 - L2 LINE L2 0 3313 2896 253 358 80 25 chr11 28213193 28213394 -120570078 - MIR SINE MIR -50 212 1 180 0 0 0 chr11 28213485 28213505 -120569967 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 243 0 0 0 chr11 28213504 28213531 -120569941 + (GA)n Simple_repeat Simple_repeat 2 28 0 1381 175 24 58 chr11 28213699 28213991 -120569481 + AluJo SINE Alu 13 294 -18 1401 129 33 0 chr11 28214341 28214581 -120568891 - L1MA1 LINE L1 0 6302 6055 22 0 0 0 chr11 28214585 28214607 -120568865 + AT_rich Low_complexity Low_complexity 1 22 0 1738 165 10 0 chr11 28215095 28215392 -120568080 + AluJb SINE Alu 1 300 -12 2525 55 0 0 chr11 28216321 28216630 -120566842 + AluY SINE Alu 1 309 -2 328 238 0 0 chr11 28217080 28217143 -120566329 + L1M2 LINE L1 2 64 -6785 23 54 0 0 chr11 28217337 28217374 -120566098 + AT_rich Low_complexity Low_complexity 1 37 0 199 287 35 69 chr11 28218535 28218622 -120564850 - MIR SINE MIR -118 144 61 231 196 0 0 chr11 28218649 28218695 -120564777 + CT-rich Low_complexity Low_complexity 1 46 0 642 218 47 80 chr11 28218963 28219141 -120564331 - MLT1E3 LTR MaLR -4 611 436 1102 78 0 48 chr11 28219161 28219327 -120564145 + MLT2A1 LTR ERVL 287 444 0 624 374 89 31 chr11 28219763 28220402 -120563070 + L3 LINE CR1 823 1498 -79 190 231 0 0 chr11 28220405 28220444 -120563028 - MER5A DNA MER1_type 0 189 151 3056 26 0 0 chr11 28220478 28220861 -120562611 - L1P2 LINE L1 -539 5615 5232 2002 174 82 32 chr11 28221034 28221495 -120561977 - LTR2B LTR ERV1 0 490 7 23 0 0 0 chr11 28222033 28222056 -120561416 + AT_rich Low_complexity Low_complexity 1 23 0 232 268 51 123 chr11 28222546 28222684 -120560788 - L2 LINE L2 -4 3309 3182 303 362 0 29 chr11 28223472 28223577 -120559895 + L2 LINE L2 2898 2999 -314 1456 114 117 24 chr11 28223838 28224128 -120559344 - THE1C LTR MaLR -58 317 1 233 286 105 53 chr11 28224303 28224474 -120558998 + MIR3 SINE MIR 17 196 -12 225 347 0 11 chr11 28225235 28225330 -120558142 - L1PA12 LINE L1 -6074 1507 1414 35 41 0 0 chr11 28225759 28225808 -120557664 + AT_rich Low_complexity Low_complexity 1 49 0 320 233 33 33 chr11 28225821 28225911 -120557561 - MIR SINE MIR -57 205 116 211 353 20 7 chr11 28226046 28226199 -120557273 + (TA)n Simple_repeat Simple_repeat 2 156 0 297 167 0 0 chr11 28429324 28429378 -120354094 + (CATA)n Simple_repeat Simple_repeat 1 54 0 287 188 163 12 chr11 28429541 28429621 -120353851 + MIR SINE MIR 63 154 -108 30 27 0 0 chr11 28429714 28429751 -120353721 + AT_rich Low_complexity Low_complexity 1 37 0 225 294 49 49 chr11 28430194 28430337 -120353135 + MIR SINE MIR 12 154 -108 2286 104 10 0 chr11 28431029 28431326 -120352146 + AluSp SINE Alu 4 303 -10 180 77 0 0 chr11 28431852 28431878 -120351594 + (GA)n Simple_repeat Simple_repeat 1 26 0 387 262 75 0 chr11 28432626 28432733 -120350739 + MIR3 SINE MIR 91 205 -3 23 33 0 0 chr11 28432797 28432827 -120350645 + AT_rich Low_complexity Low_complexity 1 30 0 339 329 70 35 chr11 28432895 28433123 -120350349 + MIR SINE MIR 1 236 -26 21 0 0 0 chr11 28433377 28433398 -120350074 + AT_rich Low_complexity Low_complexity 1 21 0 702 247 133 7 chr11 28433769 28434048 -120349424 - LTR33A LTR ERVL -7 516 203 323 256 0 23 chr11 28434706 28434792 -120348680 + CT-rich Low_complexity Low_complexity 2 85 0 226 354 22 3 chr11 28434875 28434982 -120348490 + MIR SINE MIR 28 114 -94 272 290 0 0 chr11 28434982 28435044 -120348428 + polypyrimidine Low_complexity Low_complexity 1 62 0 703 161 21 34 chr11 28435044 28435328 -120348144 + CT-rich Low_complexity Low_complexity 1 280 0 675 197 0 0 chr11 28435332 28435449 -120348023 - FRAM SINE Alu -14 162 46 6676 37 0 0 chr11 28435549 28436927 -120346545 - L1PA4 LINE L1 -78 6077 4700 296 245 39 26 chr11 28436969 28437124 -120346348 + L1ME LINE L1 857 1013 -5057 699 288 114 34 chr11 28437220 28437248 -120346224 + L2 LINE L2 3022 3046 -267 1589 181 72 26 chr11 28437248 28437597 -120345875 + MLT1A1 LTR MaLR 1 365 0 699 288 114 34 chr11 28437597 28437832 -120345640 + L2 LINE L2 3046 3306 -7 299 353 77 67 chr11 28438660 28439314 -120344158 - L2 LINE L2 -82 3190 2525 2692 105 6 0 chr11 28439760 28440122 -120343350 + THE1B LTR MaLR 1 364 0 2502 79 0 0 chr11 28441032 28441336 -120342136 + AluY SINE Alu 1 304 -7 245 333 48 12 chr11 28442884 28442968 -120340504 - MIR SINE MIR -175 87 1 5655 114 11 23 chr11 28443179 28444903 -120338569 + L1PA10 LINE L1 4413 6105 -63 606 183 0 0 chr11 28444919 28445039 -120338433 + (TA)n Simple_repeat Simple_repeat 1 120 0 391 218 109 13 chr11 28445402 28445558 -120337914 - L1ME LINE L1 -326 5795 5625 1641 179 38 14 chr11 28445936 28446227 -120337245 + AluJo SINE Alu 1 298 -14 321 258 0 32 chr11 28446227 28446320 -120337152 + GA-rich Low_complexity Low_complexity 4 93 0 1003 197 25 7 chr11 28446829 28447103 -120336369 + L1ME1 LINE L1 4993 5271 -875 2162 125 0 22 chr11 28447117 28447436 -120336036 + AluSq SINE Alu 1 312 -1 1852 198 52 9 chr11 28447436 28447896 -120335576 + L1ME1 LINE L1 5313 5792 -374 985 236 24 77 chr11 28448002 28448379 -120335093 + L1ME1 LINE L1 5779 6135 -31 1006 312 78 5 chr11 28448465 28448857 -120334615 + L2 LINE L2 2631 3057 -256 290 165 311 0 chr11 28448892 28448995 -120334477 - MLT1H LTR MaLR 0 555 421 453 230 62 23 chr11 28449046 28449251 -120334221 - MLT1H LTR MaLR -298 232 6 622 229 17 46 chr11 28449325 28449500 -120333972 + L2 LINE L2 3117 3286 -27 192 77 0 0 chr11 28451144 28451170 -120332302 + (T)n Simple_repeat Simple_repeat 1 26 0 329 204 48 36 chr11 28451170 28451337 -120332135 - L1ME LINE L1 -2335 5450 5282 * 41176 46 2 7 chr11 28451323 28457503 -120325969 - L1PA4 LINE L1 0 6155 4 708 211 13 13 chr11 28457510 28457666 -120325806 - MER58B DNA MER1_type -13 328 173 454 325 16 5 chr11 28457862 28458056 -120325416 - MER117 DNA MER1_type -1 196 1 438 70 2 0 chr11 28458097 28458166 -120325306 + THE1C LTR MaLR 1 70 -285 5542 113 28 5 chr11 28458168 28459012 -120324460 + THE1C-int LTR MaLR 717 1580 0 2209 108 61 19 chr11 28459012 28459372 -120324100 + THE1C LTR MaLR 1 375 0 186 261 141 65 chr11 28459442 28459534 -120323938 + MIR SINE MIR 89 187 -75 1694 183 46 39 chr11 28461190 28461579 -120321893 + MLT1D LTR MaLR 1 392 -113 280 184 46 92 chr11 28461642 28461751 -120321721 + Charlie8 DNA MER1_type 38 141 -2276 207 100 0 0 chr11 28461752 28461782 -120321690 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 682 152 32 0 chr11 28462015 28462140 -120321332 + L1MC3 LINE L1 7647 7775 -10 244 253 66 0 chr11 28462140 28462231 -120321241 + Charlie8 DNA MER1_type 420 516 -1901 534 271 33 26 chr11 28462291 28462442 -120321030 - MIR3 SINE MIR -38 170 19 485 260 41 8 chr11 28463410 28463533 -120319939 - MIR SINE MIR -66 142 16 685 271 26 70 chr11 28463616 28463889 -120319583 + MIR SINE MIR 2 262 0 399 280 68 23 chr11 28463887 28464019 -120319453 - MIR SINE MIR -93 169 32 * 202 226 132 0 chr11 28464372 28464425 -120319047 + L3 LINE CR1 883 942 -635 274 326 127 36 chr11 28464650 28464871 -120318601 + L3 LINE CR1 1130 1370 -207 245 271 17 0 chr11 28466700 28466759 -120316713 + MIR3 SINE MIR 114 173 -35 22 56 0 0 chr11 28469232 28469268 -120314204 + AT_rich Low_complexity Low_complexity 1 36 0 1224 276 22 38 chr11 28470559 28471161 -120312311 - L1MDa LINE L1 -3034 3181 2590 1257 80 37 43 chr11 28471203 28471390 -120312082 - AluSg/x SINE Alu -15 297 112 386 101 116 14 chr11 28471402 28471471 -120312001 + Charlie3 DNA MER1_type 2636 2711 0 2594 96 23 35 chr11 28471514 28471948 -120311524 + MER1A DNA MER1_type 61 529 0 339 206 96 55 chr11 28471948 28472147 -120311325 - L1MDa LINE L1 -4417 1979 1773 690 148 25 0 chr11 28472270 28472392 -120311080 + L1PA16 LINE L1 5956 6080 -86 2999 160 69 12 chr11 28472392 28473155 -120310317 - MER21A LTR ERV1 0 931 3 492 145 0 0 chr11 28473155 28473238 -120310234 + L1PA16 LINE L1 6074 6156 -10 567 249 68 89 chr11 28473263 28474059 -120309413 - L1MDa LINE L1 -4624 1591 806 207 260 52 13 chr11 28474328 28474405 -120309067 - MIR SINE MIR -3 259 180 375 309 44 28 chr11 28474646 28474827 -120308645 - MIR3 SINE MIR -21 187 4 637 301 38 9 chr11 28475576 28475789 -120307683 + MIR SINE MIR 32 250 -12 22 0 0 0 chr11 28475798 28475820 -120307652 + AT_rich Low_complexity Low_complexity 1 22 0 192 324 0 29 chr11 28475820 28475888 -120307584 + L2 LINE L2 3207 3272 0 469 249 249 0 chr11 28477576 28477757 -120305715 - MIR SINE MIR -3 259 34 285 323 115 51 chr11 28477919 28478275 -120305197 - L2 LINE L2 0 3313 2935 250 288 50 36 chr11 28478924 28479063 -120304409 - MIR3 SINE MIR -8 200 60 2255 80 0 17 chr11 28479255 28479576 -120303896 + AluY SINE Alu 1 316 0 366 208 94 10 chr11 28480302 28480398 -120303074 - MER117 DNA MER1_type -48 149 46 646 324 45 26 chr11 28480919 28481228 -120302244 - L2 LINE L2 -5 3308 2994 1393 152 46 100 chr11 28481229 28481618 -120301854 + THE1C LTR MaLR 1 368 -7 640 266 122 101 chr11 28481715 28481872 -120301600 + L2 LINE L2 2791 2943 -370 1562 218 7 13 chr11 28481872 28482179 -120301293 - AluJo SINE Alu -7 305 1 640 266 122 101 chr11 28482179 28482515 -120300957 + L2 LINE L2 2943 3295 -18 269 335 122 20 chr11 28483769 28483966 -120299506 + MIR SINE MIR 2 218 -44 1652 171 0 50 chr11 28484815 28485140 -120298332 + AluJb SINE Alu 1 310 0 1732 246 25 23 chr11 28485160 28485672 -120297800 + LTR10D LTR ERV1 1 513 0 189 350 131 25 chr11 28486271 28486431 -120297041 + MIR SINE MIR 35 211 -51 257 345 60 0 chr11 28487630 28487746 -120295726 + Charlie8 DNA MER1_type 138 260 -2157 3421 162 21 28 chr11 28487897 28488401 -120295071 + L1MA4 LINE L1 5521 6027 -273 1790 149 29 60 chr11 28488401 28488749 -120294723 + MER1B DNA MER1_type 1 337 0 3421 162 21 28 chr11 28488749 28488775 -120294697 + L1MA4 LINE L1 6027 6052 -248 2099 135 3 0 chr11 28488775 28489086 -120294386 + AluSx SINE Alu 1 312 0 3421 162 21 28 chr11 28489086 28489272 -120294200 + L1MA4 LINE L1 6052 6233 -67 21 0 0 0 chr11 28490226 28490247 -120293225 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr11 28490479 28490500 -120292972 + (T)n Simple_repeat Simple_repeat 1 21 0 264 345 54 36 chr11 28491150 28491318 -120292154 - MIR SINE MIR -85 177 7 186 242 32 16 chr11 28491475 28491537 -120291935 - MIR SINE MIR -67 195 133 304 325 69 107 chr11 28492537 28492826 -120290646 + L2 LINE L2 2989 3266 -6 388 267 0 0 chr11 28493325 28493411 -120290061 + MIR3 SINE MIR 77 162 -46 1555 279 80 27 chr11 28493419 28493979 -120289493 + MLT1E LTR MaLR 4 593 0 296 215 15 15 chr11 28494224 28494289 -120289183 + MIR3 SINE MIR 93 157 -51 946 157 73 11 chr11 28494292 28494349 -120289123 + MER5A DNA MER1_type 1 53 -136 6523 24 7 4 chr11 28494349 28495114 -120288358 + L1PA4 LINE L1 5389 6155 0 946 157 73 11 chr11 28495114 28495234 -120288238 + MER5A DNA MER1_type 53 189 0 322 254 97 0 chr11 28495286 28495400 -120288072 - MIR SINE MIR 0 262 138 608 302 104 24 chr11 28496282 28496494 -120286978 - MIR SINE MIR -33 229 1 929 275 45 115 chr11 28496594 28496809 -120286663 - MLT1-int LTR MaLR -233 1138 909 1658 118 118 48 chr11 28496809 28497098 -120286374 + AluSc SINE Alu 1 309 0 929 275 45 115 chr11 28497098 28497395 -120286077 - MLT1-int LTR MaLR -462 909 662 1878 217 35 63 chr11 28497451 28498100 -120285372 - MLT1-int LTR MaLR -714 657 27 841 252 46 82 chr11 28498118 28498417 -120285055 - MLT2C1 LTR ERVL 0 397 116 1994 120 23 33 chr11 28498417 28498717 -120284755 + AluSx SINE Alu 1 297 -15 841 252 46 82 chr11 28498717 28498829 -120284643 - MLT2C1 LTR ERVL -281 116 1 1756 151 17 20 chr11 28498982 28499274 -120284198 + AluJo SINE Alu 1 291 -21 995 114 0 0 chr11 28499345 28499477 -120283995 + AluSp/q SINE Alu 171 302 -11 249 279 0 15 chr11 28500998 28501066 -120282406 - LTR33 LTR ERVL -150 371 305 1248 246 41 22 chr11 28501074 28501436 -120282036 + MLT1A2 LTR MaLR 1 369 -5 596 334 71 19 chr11 28501413 28501721 -120281751 - LTR33 LTR ERVL -197 324 1 * 198 0 0 0 chr11 28501925 28501947 -120281525 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 371 222 33 11 chr11 28502036 28502126 -120281346 + Charlie8 DNA MER1_type 93 184 -2233 378 352 0 0 chr11 28502276 28502381 -120281091 - MIR SINE MIR -59 149 45 1126 230 50 55 chr11 28502436 28502815 -120280657 + L1M4 LINE L1 4753 5129 -1017 25 0 0 0 chr11 28504588 28504613 -120278859 + AT_rich Low_complexity Low_complexity 1 25 0 212 327 88 93 chr11 28504679 28504905 -120278567 - MIR SINE MIR -19 243 19 229 363 22 15 chr11 28505056 28505191 -120278281 - L2 LINE L2 -578 2736 2601 462 310 32 11 chr11 28507550 28507737 -120275735 + MER117 DNA MER1_type 2 192 -5 775 285 72 0 chr11 28507856 28508077 -120275395 - MIR SINE MIR -2 260 24 289 315 0 0 chr11 28508513 28508602 -120274870 - L2 LINE L2 0 3272 3184 251 339 133 23 chr11 28510931 28511149 -120272323 - MIR SINE MIR -3 259 18 291 241 94 94 chr11 28511479 28511670 -120271802 - L1ME LINE L1 -447 5723 5533 401 289 46 61 chr11 28511696 28511893 -120271579 - LTR16C LTR ERVL -1 490 297 661 225 36 20 chr11 28512047 28512296 -120271176 - L1ME LINE L1 -660 5510 5258 1176 285 60 2 chr11 28512296 28512693 -120270779 + MLT1J1 LTR MaLR 1 420 -26 835 291 8 35 chr11 28513594 28513852 -120269620 + MIR SINE MIR 12 262 0 197 349 12 12 chr11 28514402 28514485 -120268987 + L2 LINE L2 3190 3272 0 251 229 21 139 chr11 28514660 28514804 -120268668 + L3 LINE CR1 1392 1518 -59 300 283 40 30 chr11 28514830 28514863 -120268609 - MER5A DNA MER1_type -22 167 136 180 0 0 0 chr11 28514863 28514883 -120268589 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 300 283 40 30 chr11 28514883 28514948 -120268524 - MER5A DNA MER1_type -53 136 68 2977 204 30 49 chr11 28514948 28515816 -120267656 - L1ME2 LINE L1 -11 6153 5270 2392 82 3 0 chr11 28515816 28516109 -120267363 - AluSg SINE Alu -16 294 1 2977 204 30 49 chr11 28516109 28516228 -120267244 - L1ME2 LINE L1 -894 5270 5183 1963 175 18 30 chr11 28516228 28516623 -120266849 + MLT1B LTR MaLR 1 390 0 2977 204 30 49 chr11 28516623 28516685 -120266787 - L1ME2 LINE L1 -981 5183 5121 229 220 0 17 chr11 28516682 28516741 -120266731 - L1ME2 LINE L1 -1295 4851 4794 * 206 269 45 30 chr11 28516741 28516808 -120266664 + MER5B DNA MER1_type 111 178 0 1724 108 17 0 chr11 28516813 28517044 -120266428 + AluSc SINE Alu 61 295 -14 203 295 115 0 chr11 28517491 28517552 -120265920 + L2 LINE L2 3243 3310 -3 420 280 119 18 chr11 28517657 28517825 -120265647 + MIR SINE MIR 14 198 -64 218 309 103 44 chr11 28517826 28517962 -120265510 + L2 LINE L2 3168 3311 -2 180 0 0 0 chr11 28519562 28519582 -120263890 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2414 84 0 0 chr11 28519606 28519902 -120263570 + AluY SINE Alu 1 296 -15 749 266 126 55 chr11 28520340 28520829 -120262643 - MLT1H LTR MaLR -2 547 26 181 172 0 0 chr11 28520906 28520935 -120262537 - L2 LINE L2 -18 3295 3267 189 191 24 24 chr11 28521329 28521371 -120262101 - L3 LINE CR1 -4 1573 1532 223 254 0 36 chr11 28521656 28521711 -120261761 - L2 LINE L2 -8 3264 3212 2211 93 3 6 chr11 28523499 28523831 -120259641 + L1P4 LINE L1 5387 5717 -457 497 269 101 17 chr11 28523831 28524069 -120259403 - MIR SINE MIR -3 259 2 269 368 132 0 chr11 28524950 28525140 -120258332 + MIR SINE MIR 48 262 0 22 35 0 0 chr11 28525869 28525898 -120257574 + AT_rich Low_complexity Low_complexity 1 29 0 754 281 38 21 chr11 28526047 28526190 -120257282 - MIR SINE MIR -2 260 110 1040 245 34 85 chr11 28526190 28526660 -120256812 - MLT1J1 LTR MaLR 0 446 1 754 281 38 21 chr11 28526660 28526754 -120256718 - MIR SINE MIR -152 110 19 517 253 43 105 chr11 28527277 28527559 -120255913 - MIR SINE MIR -16 246 2 446 314 58 11 chr11 28528013 28528204 -120255268 - MIR SINE MIR -59 203 4 3009 269 108 10 chr11 28528836 28529926 -120253546 + L2 LINE L2 1843 3038 -275 1537 280 52 35 chr11 28529957 28530746 -120252726 + L1ME LINE L1 34 835 -5235 3843 76 4 4 chr11 28530794 28531308 -120252164 - L1PA7 LINE L1 -7 6147 5634 40978 33 24 1 chr11 28531323 28537336 -120246136 - L1PA4 LINE L1 -3 6152 1 469 249 249 0 chr11 28537895 28538076 -120245396 - MIR SINE MIR -3 259 34 285 323 115 51 chr11 28538238 28538594 -120244878 - L2 LINE L2 0 3313 2935 250 288 50 36 chr11 28539242 28539381 -120244091 - MIR3 SINE MIR -8 200 60 2255 80 0 17 chr11 28539573 28539894 -120243578 + AluY SINE Alu 1 316 0 366 208 94 10 chr11 28540620 28540716 -120242756 - MER117 DNA MER1_type -48 149 46 670 250 49 11 chr11 28540914 28541098 -120242374 + LTR10B LTR ERV1 315 505 0 189 350 131 25 chr11 28541697 28541857 -120241615 + MIR SINE MIR 35 211 -51 257 345 60 0 chr11 28543056 28543172 -120240300 + Charlie8 DNA MER1_type 138 260 -2157 3756 161 27 27 chr11 28543323 28543826 -120239646 + L1MA4 LINE L1 5521 6023 -277 1790 149 29 60 chr11 28543826 28544174 -120239298 + MER1B DNA MER1_type 1 337 0 3756 161 27 27 chr11 28544174 28544200 -120239272 + L1MA4 LINE L1 6023 6048 -252 2099 135 3 0 chr11 28544200 28544511 -120238961 + AluSx SINE Alu 1 312 0 3756 161 27 27 chr11 28544511 28544760 -120238712 + L1MA4 LINE L1 6047 6300 0 448 293 89 4 chr11 28544772 28545031 -120238441 - L1MEc LINE L1 -4578 2009 1729 2828 130 56 33 chr11 28545049 28545601 -120237871 - L1MA8 LINE L1 -3 6288 5724 862 240 9 0 chr11 28545735 28545964 -120237508 - L1MEc LINE L1 -871 5535 5305 1757 268 80 17 chr11 28545981 28546567 -120236905 + MER76 LTR ERV 32 654 -34 1018 232 20 10 chr11 28546571 28546868 -120236604 - L1MEc LINE L1 -1098 5308 5009 1921 268 50 12 chr11 28546871 28547838 -120235634 - L1MEc LINE L1 -2191 4215 3213 1258 181 5 5 chr11 28547853 28548063 -120235409 - AluJb SINE Alu -23 289 80 1209 252 12 26 chr11 28548065 28548707 -120234765 - L1MEc LINE L1 -3187 3219 2475 1110 264 94 15 chr11 28548809 28549138 -120234334 - L1MEc LINE L1 -6045 364 10 53 30 0 0 chr11 28549276 28549343 -120234129 + AT_rich Low_complexity Low_complexity 1 67 0 2604 99 14 8 chr11 28550152 28550514 -120232958 + THE1B LTR MaLR 1 364 0 2286 74 0 3 chr11 28551266 28551550 -120231922 + AluY SINE Alu 1 283 -28 468 0 0 0 chr11 28551550 28551602 -120231870 + (TA)n Simple_repeat Simple_repeat 2 53 0 303 293 68 54 chr11 28551602 28551749 -120231723 - L2 LINE L2 -10 3303 3155 1936 209 41 58 chr11 28552007 28552520 -120230952 - MLT1D LTR MaLR 0 505 2 1377 220 23 54 chr11 28552687 28553073 -120230399 + MLT1A2 LTR MaLR 1 374 0 2016 164 41 37 chr11 28555162 28555717 -120227755 - MLT2A2 LTR ERVL -1 553 1 184 247 169 52 chr11 28556918 28556995 -120226477 + MIR SINE MIR 3 88 -174 537 16 0 0 chr11 28557147 28557209 -120226263 + (TC)n Simple_repeat Simple_repeat 1 62 0 189 0 0 0 chr11 28557208 28557229 -120226243 + (CA)n Simple_repeat Simple_repeat 1 21 0 * 998 258 96 41 chr11 28557405 28557823 -120225649 - MLT1J1 LTR MaLR -5 441 1 882 196 93 10 chr11 28558958 28559162 -120224310 - MER58A DNA MER1_type 0 224 4 1603 155 101 4 chr11 28559231 28559509 -120223963 - AluSx SINE Alu -7 305 1 2839 149 61 31 chr11 28559523 28560099 -120223373 + LTR59 LTR ERV1 1 593 -4 811 272 87 8 chr11 28560324 28560578 -120222894 - MLT1J1 LTR MaLR -129 317 44 2368 92 0 0 chr11 28561300 28561594 -120221878 - AluSg SINE Alu -16 294 1 427 269 25 8 chr11 28561898 28562017 -120221455 - MIR SINE MIR -50 212 92 856 210 11 0 chr11 28562104 28562280 -120221192 - MIR SINE MIR -6 256 79 576 294 62 31 chr11 28562544 28562629 -120220843 + MIR3 SINE MIR 2 83 -125 1715 206 19 16 chr11 28562629 28562993 -120220479 + MLT1A1 LTR MaLR 1 365 0 576 294 62 31 chr11 28562993 28563101 -120220371 + MIR3 SINE MIR 83 201 -7 24 32 0 0 chr11 28563356 28563387 -120220085 + AT_rich Low_complexity Low_complexity 1 31 0 24 77 0 0 chr11 28563602 28563654 -120219818 + AT_rich Low_complexity Low_complexity 1 52 0 209 341 80 0 chr11 28564117 28564205 -120219267 - L2 LINE L2 -35 3237 3143 915 226 0 0 chr11 28566871 28567035 -120216437 - AluJb SINE Alu -15 297 134 263 343 38 9 chr11 28567908 28568013 -120215459 + L2 LINE L2 2890 2997 -275 2815 249 200 49 chr11 28568210 28569193 -120214279 - L2 LINE L2 -428 2886 1672 2190 123 3 3 chr11 28569193 28569503 -120213969 - AluSx SINE Alu -2 310 1 2815 249 200 49 chr11 28569503 28569770 -120213702 - L2 LINE L2 -1642 1672 1447 240 349 12 12 chr11 28570085 28570168 -120213304 - L2 LINE L2 -2143 1171 1089 28 29 0 0 chr11 28570299 28570334 -120213138 + AT_rich Low_complexity Low_complexity 1 35 0 25 31 0 0 chr11 28570533 28570565 -120212907 + AT_rich Low_complexity Low_complexity 1 32 0 2266 168 67 112 chr11 28570600 28571361 -120212111 + LTR8A LTR ERV1 1 727 0 1743 174 0 20 chr11 28571425 28571724 -120211748 - AluSx SINE Alu -19 293 1 343 264 248 8 chr11 28571725 28571846 -120211626 - MIR SINE MIR -84 178 29 679 271 69 92 chr11 28572292 28572826 -120210646 + LTR33A LTR ERVL 2 523 0 575 102 51 0 chr11 28573439 28573576 -120209896 + (TA)n Simple_repeat Simple_repeat 1 144 0 1925 166 0 3 chr11 28573576 28573865 -120209607 - AluSx SINE Alu -24 288 1 44 84 0 0 chr11 28573983 28574090 -120209382 + AT_rich Low_complexity Low_complexity 1 107 0 1358 163 51 26 chr11 28574179 28574492 -120208980 + MER33 DNA MER1_type 4 324 0 584 318 37 0 chr11 28575374 28575591 -120207881 - MIR SINE MIR -10 252 28 861 259 31 22 chr11 28575889 28576117 -120207355 - MIR SINE MIR -30 232 3 489 306 40 25 chr11 28576412 28576750 -120206722 + MLT1I LTR MaLR 62 407 -2 427 184 40 0 chr11 28577661 28577737 -120205735 + AluJo SINE Alu 56 134 -178 804 270 126 51 chr11 28577927 28578397 -120205075 + MLT1J LTR MaLR 1 505 -6 2111 77 35 0 chr11 28578402 28578688 -120204784 + L1PA7 LINE L1 5851 6146 -8 773 200 0 0 chr11 28578706 28578836 -120204636 + FLAM_C SINE Alu 1 130 -3 2051 136 55 3 chr11 28580508 28580853 -120202619 + L1PA16 LINE L1 5794 6156 -10 2335 98 0 0 chr11 28580879 28581184 -120202288 + AluSc SINE Alu 5 309 0 182 36 0 36 chr11 28581243 28581271 -120202201 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 485 216 0 65 chr11 28581886 28582025 -120201447 + L1M2 LINE L1 5663 5792 -520 183 156 0 0 chr11 28582042 28582074 -120201398 + (TA)n Simple_repeat Simple_repeat 1 32 0 2840 183 14 58 chr11 28582105 28582745 -120200727 + LTR9 LTR ERV1 1 612 0 198 103 0 0 chr11 28582815 28582844 -120200628 + (TG)n Simple_repeat Simple_repeat 2 30 0 301 187 0 67 chr11 28582844 28582919 -120200553 + L1MCa LINE L1 1995 2064 -4362 549 58 0 47 chr11 28582934 28583020 -120200452 - L1MA9 LINE L1 -435 5877 5796 1089 158 27 0 chr11 28583062 28583246 -120200226 + MER5A DNA MER1_type 1 189 0 5029 98 6 39 chr11 28583541 28583983 -120199489 + L1PA15 LINE L1 5379 5783 -382 429 20 0 0 chr11 28583983 28584033 -120199439 + (TG)n Simple_repeat Simple_repeat 1 50 0 5029 98 6 39 chr11 28584033 28584403 -120199069 + L1PA15 LINE L1 5783 6164 -1 547 207 171 0 chr11 28584695 28584835 -120198637 - MER5A DNA MER1_type 0 189 26 250 270 17 25 chr11 28584846 28584953 -120198519 - MLT1I LTR MaLR -267 142 45 1621 166 25 135 chr11 28584993 28585518 -120197954 + MLT1D LTR MaLR 39 505 0 224 348 45 11 chr11 28585923 28586012 -120197460 - MIR SINE MIR -100 108 17 1986 131 7 0 chr11 28586232 28586548 -120196924 - AluSx SINE Alu 0 318 1 474 260 110 24 chr11 28586548 28586794 -120196678 - L1ME4a LINE L1 -232 5889 5623 684 74 28 0 chr11 28586797 28586905 -120196567 + (TA)n Simple_repeat Simple_repeat 2 112 0 323 121 17 0 chr11 28586963 28587021 -120196451 + (TA)n Simple_repeat Simple_repeat 1 59 0 328 309 159 14 chr11 28587076 28587283 -120196189 - L1ME4a LINE L1 -2255 5553 5317 21 36 0 0 chr11 28587302 28587330 -120196142 + AT_rich Low_complexity Low_complexity 1 28 0 1712 108 0 0 chr11 28589086 28589318 -120194154 - AluY SINE Alu -11 300 69 399 319 102 0 chr11 28589872 28590107 -120193365 + LTR16A LTR ERVL 13 271 -179 802 279 74 5 chr11 28590271 28590522 -120192950 - MIR SINE MIR -7 255 7 306 308 48 0 chr11 28590608 28590712 -120192760 + L2 LINE L2 3163 3271 -1 24 32 0 0 chr11 28591224 28591255 -120192217 + AT_rich Low_complexity Low_complexity 1 31 0 255 285 101 70 chr11 28591724 28591949 -120191523 + MIR3 SINE MIR 12 246 -16 1974 154 3 7 chr11 28592695 28592993 -120190479 + AluJo SINE Alu 1 297 -15 373 317 35 21 chr11 28593781 28593926 -120189546 - L2 LINE L2 -1 3271 3125 2327 122 42 19 chr11 28594586 28594964 -120188508 + MLT1B LTR MaLR 1 387 -3 2077 122 7 0 chr11 28595003 28595319 -120188153 + AluSc SINE Alu 1 318 0 500 321 138 49 chr11 28595726 28596391 -120187081 + L2 LINE L2 2584 3313 0 2691 173 27 29 chr11 28596689 28597205 -120186267 - MLT2B2 LTR ERVL 0 515 1 269 221 107 82 chr11 28597525 28597656 -120185816 + MIR SINE MIR 18 152 -68 228 303 45 0 chr11 28598001 28598067 -120185405 + MLT1J LTR MaLR 104 172 -339 278 225 99 86 chr11 28598109 28598260 -120185212 + MLT1L LTR MaLR 450 602 -13 1341 159 55 14 chr11 28598271 28598560 -120184912 - MLT1D LTR MaLR -3 502 202 1803 10 0 0 chr11 28598600 28598809 -120184663 - L1PA2 LINE L1 -485 5670 5462 4180 34 0 8 chr11 28598809 28599302 -120184170 + L1PA2 LINE L1 5653 6155 0 568 182 0 125 chr11 28599309 28599501 -120183971 - MLT1D LTR MaLR -337 168 1 237 325 150 0 chr11 28599578 28599698 -120183774 + MIR3 SINE MIR 4 141 -67 455 227 241 64 chr11 28599790 28599859 -120183613 + MLT1H LTR MaLR 1 56 -493 1865 212 73 9 chr11 28599859 28600298 -120183174 + MLT1C LTR MaLR 1 467 0 455 227 241 64 chr11 28600298 28600681 -120182791 + MLT1H LTR MaLR 56 533 -16 383 351 23 17 chr11 28600874 28601048 -120182424 + MIR SINE MIR 18 192 -70 291 258 22 0 chr11 28601242 28601331 -120182141 + (TA)n Simple_repeat Simple_repeat 1 91 0 1028 31 78 0 chr11 28602633 28602762 -120180710 + MER85 DNA T2_type 1 139 0 1671 207 168 15 chr11 28602924 28603464 -120180008 - MLT1G LTR MaLR -11 579 1 231 310 78 78 chr11 28603667 28603783 -120179689 - L2 LINE L2 -53 3219 3104 422 340 31 27 chr11 28604051 28604307 -120179165 - L2 LINE L2 -527 2787 2531 254 324 14 0 chr11 28604317 28604388 -120179084 + MIR SINE MIR 188 259 -3 497 291 72 29 chr11 28604422 28604700 -120178772 - L2 LINE L2 -801 2513 2224 309 339 73 54 chr11 28605639 28605952 -120177520 + L3 LINE CR1 616 934 -643 553 221 90 0 chr11 28606017 28606162 -120177310 + MER103 DNA DNA 4 161 -5 180 307 93 53 chr11 28606219 28606369 -120177103 + L3 LINE CR1 906 1061 -516 454 278 20 53 chr11 28606424 28606544 -120176928 - MIR SINE MIR -105 157 41 2188 113 51 25 chr11 28606544 28606899 -120176573 + THE1B LTR MaLR 1 364 0 454 278 20 53 chr11 28606899 28606929 -120176543 - MIR SINE MIR -221 41 12 212 221 13 0 chr11 28607691 28607768 -120175704 + (TA)n Simple_repeat Simple_repeat 1 78 0 934 209 40 0 chr11 28607812 28608013 -120175459 + MER3 DNA MER1_type 1 209 0 2232 142 14 5 chr11 28608289 28608656 -120174816 + L1PA15 LINE L1 5793 6162 -3 1003 197 25 7 chr11 28609380 28609654 -120173818 + L1ME1 LINE L1 4993 5271 -875 2162 125 0 22 chr11 28609668 28609987 -120173485 + AluSq SINE Alu 1 312 -1 1852 198 52 9 chr11 28609987 28610447 -120173025 + L1ME1 LINE L1 5313 5792 -374 985 236 24 77 chr11 28610553 28610930 -120172542 + L1ME1 LINE L1 5779 6135 -31 1006 312 78 5 chr11 28611016 28611408 -120172064 + L2 LINE L2 2631 3057 -256 312 179 286 0 chr11 28611443 28611555 -120171917 - MLT1H1 LTR MaLR 0 555 412 339 205 0 0 chr11 28611745 28611828 -120171644 - L1M4 LINE L1 -941 5205 5123 3934 24 0 0 chr11 28611828 28612288 -120171184 + L1PA2 LINE L1 5693 6152 -3 971 180 35 2 chr11 28612295 28612867 -120170605 + L1MD2 LINE L1 5295 5975 -267 1266 208 13 20 chr11 28612873 28613176 -120170296 + L1MD2 LINE L1 6043 6343 -16 1428 239 3 27 chr11 28613350 28613684 -120169788 + MLT1I LTR MaLR 84 409 0 249 57 0 0 chr11 28614840 28614875 -120168597 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 336 271 42 0 chr11 28615659 28615755 -120167717 + MIR3 SINE MIR 98 197 -11 727 195 6 198 chr11 28616621 28616944 -120166528 + MIR SINE MIR 2 262 0 6791 24 12 2 chr11 28617089 28617941 -120165531 - L1PA4 LINE L1 -11 6144 5285 806 240 111 11 chr11 28618932 28619203 -120164269 - LTR16A LTR ERVL -98 352 55 21 0 0 0 chr11 28619609 28619630 -120163842 + AT_rich Low_complexity Low_complexity 1 21 0 40760 31 23 5 chr11 28619634 28625681 -120157791 - L1PA3 LINE L1 0 6155 3 285 287 127 32 chr11 28626003 28626296 -120157176 + L2 LINE L2 2679 3008 -264 812 216 38 24 chr11 28626296 28626509 -120156963 - MER20 DNA MER1_type -3 216 1 285 287 127 32 chr11 28626509 28626591 -120156881 + L2 LINE L2 3008 3081 -191 3236 141 41 38 chr11 28626717 28627117 -120156355 - Tigger2 DNA MER2_type -2058 660 256 1663 151 54 0 chr11 28627117 28627395 -120156077 - AluJb SINE Alu -19 293 1 3236 141 41 38 chr11 28627395 28627652 -120155820 - Tigger2 DNA MER2_type -2462 256 1 18006 67 10 3 chr11 28627863 28631713 -120151759 - L1PA7 LINE L1 0 6154 2283 180 0 0 0 chr11 28632455 28632475 -120150997 + (A)n Simple_repeat Simple_repeat 1 20 0 312 176 0 0 chr11 28632628 28632696 -120150776 + (TA)n Simple_repeat Simple_repeat 1 68 0 1875 184 82 64 chr11 28632869 28633403 -120150069 + MER89 LTR ERV1 2 545 -14 285 261 157 15 chr11 28633472 28633740 -120149732 - HAL1b LINE L1 -29 1319 1014 368 242 8 0 chr11 28633747 28633879 -120149593 + (TA)n Simple_repeat Simple_repeat 2 134 0 234 311 31 31 chr11 28633891 28634148 -120149324 - HAL1b LINE L1 -345 1003 747 261 229 0 16 chr11 28634201 28634262 -120149210 + CT-rich Low_complexity Low_complexity 3 62 0 2358 90 3 6 chr11 28634206 28634580 -120148892 - AluSx SINE Alu 0 373 1 540 297 57 6 chr11 28634647 28634822 -120148650 - MIR SINE MIR -39 223 40 595 264 28 60 chr11 28634822 28634906 -120148566 - HAL1b LINE L1 -558 790 705 2230 119 132 8 chr11 28634906 28635285 -120148187 + MSTA LTR MaLR 3 428 0 595 264 28 60 chr11 28635285 28635552 -120147920 - HAL1b LINE L1 -643 705 450 438 266 92 41 chr11 28635637 28635953 -120147519 - HAL1b LINE L1 -739 609 278 21 0 0 0 chr11 28636337 28636358 -120147114 + AT_rich Low_complexity Low_complexity 1 21 0 312 231 0 0 chr11 28636546 28636624 -120146848 + CT-rich Low_complexity Low_complexity 3 80 0 212 267 0 0 chr11 28637143 28637203 -120146269 + T-rich Low_complexity Low_complexity 1 60 0 589 240 58 7 chr11 28637571 28637725 -120145747 + MIR SINE MIR 84 245 -17 978 278 38 59 chr11 28637980 28638423 -120145049 - LTR16A LTR ERVL 0 450 17 283 274 0 0 chr11 28638725 28638798 -120144674 + (TA)n Simple_repeat Simple_repeat 1 73 0 850 245 25 0 chr11 28639009 28639205 -120144267 + MIR SINE MIR 2 202 -60 2069 127 127 21 chr11 28639573 28639958 -120143514 - MSTA LTR MaLR -2 426 1 2285 245 32 5 chr11 28641079 28641639 -120141833 + MER82 DNA MER2_type 79 653 0 366 358 47 34 chr11 28641809 28641957 -120141515 - MIR3 SINE MIR -52 156 7 21 57 0 0 chr11 28642284 28642319 -120141153 + AT_rich Low_complexity Low_complexity 1 35 0 254 330 45 0 chr11 28643558 28643646 -120139826 + MIR SINE MIR 127 218 -44 955 259 121 47 chr11 28643646 28644110 -120139362 - MLT1F1 LTR MaLR 0 567 70 653 264 128 22 chr11 28644271 28644498 -120138974 - MIR SINE MIR -9 253 3 207 264 309 9 chr11 28644730 28644840 -120138632 + MIR3 SINE MIR 1 143 -65 2541 211 40 42 chr11 28644851 28645597 -120137875 + L1MA9 LINE L1 5530 6274 -38 722 270 47 47 chr11 28645703 28645936 -120137536 - MIR SINE MIR -26 236 4 273 221 18 0 chr11 28646074 28646138 -120137334 + MIR SINE MIR 72 137 -71 976 195 0 0 chr11 28646464 28646628 -120136844 - FRAM SINE Alu -15 161 1 873 253 34 17 chr11 28646767 28647004 -120136468 + MIR SINE MIR 22 262 0 199 0 65 0 chr11 28647245 28647276 -120136196 + (TTTTTG)n Simple_repeat Simple_repeat 3 35 0 280 219 171 85 chr11 28649574 28649738 -120133734 - L2 LINE L2 -1 3312 3135 778 151 22 170 chr11 28649819 28650137 -120133335 + L1MA10 LINE L1 6062 6332 -2 1964 121 4 7 chr11 28650186 28650496 -120132976 - AluSc SINE Alu 0 309 1 1193 248 55 12 chr11 28650737 28651136 -120132336 - L1MB7 LINE L1 -18 6166 5751 772 109 31 0 chr11 28651139 28651267 -120132205 - LTR54 LTR ERV1 0 510 379 337 301 27 48 chr11 28651299 28651445 -120132027 - L1M4c LINE L1 -4208 2438 2296 880 254 36 0 chr11 28651469 28651744 -120131728 - L1M4c LINE L1 -4488 2158 1874 35142 90 12 7 chr11 28651759 28656977 -120126495 + L1P LINE L1 11 5254 -892 1186 58 0 0 chr11 28656977 28657127 -120126345 + L1PA6 LINE L1 6000 6153 -1 5443 218 63 41 chr11 28657128 28658944 -120124528 - L1M4c LINE L1 -4768 1878 23 1147 315 122 4 chr11 28659058 28659576 -120123896 - L2 LINE L2 -961 2353 1775 285 248 14 117 chr11 28659709 28659854 -120123618 - MIR SINE MIR -46 216 87 7627 28 14 0 chr11 28660285 28661548 -120121924 - L1PA4 LINE L1 0 6155 4889 40447 37 22 1 chr11 28662281 28668346 -120115126 + L1PA3 LINE L1 1 6191 0 361 315 0 0 chr11 28669204 28669293 -120114179 + polypyrimidine Low_complexity Low_complexity 4 92 0 237 200 36 18 chr11 28669572 28669627 -120113845 + MLT1K LTR MaLR 162 217 -371 374 225 38 75 chr11 28669760 28669920 -120113552 + MLT1K LTR MaLR 435 588 0 21 0 0 0 chr11 28670023 28670044 -120113428 + AT_rich Low_complexity Low_complexity 1 21 0 444 273 109 48 chr11 28671122 28671185 -120112287 - MLT1J1 LTR MaLR -132 314 256 2180 89 13 0 chr11 28671185 28671488 -120111984 + L1PA11 LINE L1 5867 6173 -1 444 273 109 48 chr11 28671488 28671674 -120111798 - MLT1J1 LTR MaLR -190 256 65 498 239 0 23 chr11 28672088 28672218 -120111254 - LTR18B LTR ERVL -2 612 486 231 250 0 0 chr11 28672210 28672270 -120111202 - LTR18B LTR ERVL -422 192 133 * 9743 186 34 7 chr11 28672315 28674163 -120109309 - HERVL18 LTR ERVL -4146 1901 4 1967 166 72 107 chr11 28674198 28674806 -120108666 - LTR18B LTR ERVL -27 587 1 233 295 86 38 chr11 28674959 28675064 -120108408 + MIR SINE MIR 34 143 -65 518 248 110 34 chr11 28675118 28675352 -120108120 + MLT1E1 LTR MaLR 283 611 -43 339 257 15 139 chr11 28675970 28676172 -120107300 - L2 LINE L2 -211 3061 2885 255 278 100 92 chr11 28676255 28676536 -120106936 - MER102a DNA MER1_type -16 314 32 1395 184 27 51 chr11 28676683 28676976 -120106496 + AluJo SINE Alu 1 286 -26 1712 200 78 42 chr11 28676983 28677330 -120106142 - MER67D LTR ERV1 -5 509 141 2976 123 5 0 chr11 28677330 28677762 -120105710 + MER57B LTR ERV1 1 434 0 1712 200 78 42 chr11 28677762 28677864 -120105608 - MER67D LTR ERV1 -373 141 44 2061 116 3 0 chr11 28677864 28678148 -120105324 + AluSx SINE Alu 1 285 -27 201 196 0 0 chr11 28678148 28678194 -120105278 + (CA)n Simple_repeat Simple_repeat 1 46 0 211 200 22 0 chr11 28678242 28678287 -120105185 - L2 LINE L2 -661 2653 2608 663 193 84 101 chr11 28678450 28678807 -120104665 + LTR37A LTR ERV1 76 426 0 406 334 96 35 chr11 28678839 28679267 -120104205 - L2 LINE L2 -780 2534 2081 1128 99 0 12 chr11 28679369 28679614 -120103858 + (TTC)n Simple_repeat Simple_repeat 1 242 0 2121 130 0 0 chr11 28679619 28679912 -120103560 - AluSx SINE Alu -1 311 19 409 351 43 19 chr11 28680021 28680229 -120103243 + MIR SINE MIR 30 242 -20 242 203 0 16 chr11 28681609 28681673 -120101799 + CT-rich Low_complexity Low_complexity 4 66 0 702 304 181 23 chr11 28681673 28682294 -120101178 - L2 LINE L2 -5 3308 2593 1644 237 5 11 chr11 28683584 28683951 -120099521 - MLT1A1 LTR MaLR 0 365 1 2043 118 81 29 chr11 28684194 28684540 -120098932 + THE1B LTR MaLR 1 364 0 4668 73 3 0 chr11 28684540 28685173 -120098299 + THE1B-int LTR MaLR 1 635 -945 610 234 31 72 chr11 28685173 28685395 -120098077 - MLT1D LTR MaLR -292 213 1 4195 93 3 2 chr11 28685539 28686128 -120097344 - L1PA14 LINE L1 -2 6159 5570 219 309 0 0 chr11 28686192 28686247 -120097225 + L2 LINE L2 2999 3053 -219 2413 149 34 16 chr11 28686559 28687003 -120096469 - Tigger2 DNA MER2_type 0 2718 2267 381 167 0 0 chr11 28686988 28687054 -120096418 - Tigger2 DNA MER2_type -2650 68 3 * 372 358 93 0 chr11 28687070 28687221 -120096251 - MIR SINE MIR -70 192 28 22 56 0 0 chr11 28688021 28688057 -120095415 + AT_rich Low_complexity Low_complexity 1 36 0 452 306 41 6 chr11 28688338 28688508 -120094964 - MIR SINE MIR -44 218 43 367 210 72 73 chr11 28688604 28688823 -120094649 + MER92C LTR ERV1 1 213 -423 746 196 36 94 chr11 28689304 28689580 -120093892 + MER31-int LTR ERV1 1028 1287 -3649 269 204 0 0 chr11 28690960 28691009 -120092463 + MER92C LTR ERV1 1 49 -505 323 211 0 0 chr11 28691187 28691258 -120092214 + MER92C LTR ERV1 484 554 0 546 278 117 6 chr11 28691260 28691422 -120092050 - MIR SINE MIR -67 195 16 21 0 0 0 chr11 28691828 28691849 -120091623 + AT_rich Low_complexity Low_complexity 1 21 0 2686 26 0 3 chr11 28692617 28692925 -120090547 - AluYa5 SINE Alu -4 307 1 475 324 236 0 chr11 28694180 28694455 -120089017 + L2 LINE L2 2973 3312 -1 1210 196 0 0 chr11 28694784 28695013 -120088459 - MER46A DNA MER2_type -5 231 3 1336 209 26 32 chr11 28695015 28695359 -120088113 - MLT1A2 LTR MaLR -32 342 1 270 320 51 26 chr11 28695437 28695603 -120087869 - MIR SINE MIR -63 145 24 231 319 135 53 chr11 28697346 28697553 -120085919 + L2 LINE L2 3031 3254 -18 2017 178 11 14 chr11 28697592 28697958 -120085514 + MLT1A1 LTR MaLR 1 365 0 184 350 179 26 chr11 28698337 28698454 -120085018 - L2 LINE L2 -32 3240 3106 1558 164 9 73 chr11 28698747 28699064 -120084408 + AluJo SINE Alu 1 297 -15 533 289 0 54 chr11 28699624 28699828 -120083644 + MIR SINE MIR 60 252 -10 330 45 0 0 chr11 28700931 28700975 -120082497 + (TG)n Simple_repeat Simple_repeat 1 44 0 198 0 0 0 chr11 28701025 28701047 -120082425 + (T)n Simple_repeat Simple_repeat 1 22 0 386 231 28 35 chr11 28701322 28701465 -120082007 + LTR43 LTR ERV1 170 311 -291 21 36 0 0 chr11 28702402 28702430 -120081042 + GC_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr11 28702958 28702981 -120080491 + (T)n Simple_repeat Simple_repeat 1 23 0 258 116 0 0 chr11 28703473 28703516 -120079956 + (TC)n Simple_repeat Simple_repeat 2 44 0 218 103 0 26 chr11 28703827 28703866 -120079606 + (TTTTC)n Simple_repeat Simple_repeat 3 40 0 383 293 41 34 chr11 28705382 28705529 -120077943 - MIR SINE MIR -1 261 114 318 87 0 0 chr11 28707205 28707251 -120076221 + (GGA)n Simple_repeat Simple_repeat 2 47 0 252 86 0 0 chr11 28709092 28709127 -120074345 + (TG)n Simple_repeat Simple_repeat 1 35 0 23 0 0 0 chr11 28709354 28709377 -120074095 + AT_rich Low_complexity Low_complexity 1 23 0 218 309 32 48 chr11 28710776 28710902 -120072570 + MIR SINE MIR 69 192 -70 219 139 0 0 chr11 28711437 28711473 -120071999 + (T)n Simple_repeat Simple_repeat 1 36 0 192 337 71 10 chr11 28712144 28712195 -120071277 + MIR3 SINE MIR 76 122 -86 267 31 0 0 chr11 28712195 28712227 -120071245 + (TG)n Simple_repeat Simple_repeat 2 33 0 192 337 71 10 chr11 28712227 28712273 -120071199 + MIR3 SINE MIR 122 179 -29 23 68 0 0 chr11 28714641 28714685 -120068787 + AT_rich Low_complexity Low_complexity 1 44 0 201 74 0 0 chr11 28717020 28717047 -120066425 + (CTG)n Simple_repeat Simple_repeat 2 28 0 2739 7 0 0 chr11 28718683 28718980 -120064492 - AluYa5 SINE Alu -14 297 1 885 209 47 29 chr11 28720674 28720951 -120062521 + L1MA7 LINE L1 6010 6291 0 24 32 0 0 chr11 28721849 28721880 -120061592 + AT_rich Low_complexity Low_complexity 1 31 0 1721 134 51 16 chr11 28723025 28723339 -120060133 - MER44D DNA MER2_type -14 595 1 23 54 0 0 chr11 28723597 28723634 -120059838 + AT_rich Low_complexity Low_complexity 1 37 0 24 53 0 0 chr11 28724073 28724111 -120059361 + AT_rich Low_complexity Low_complexity 1 38 0 475 275 112 71 chr11 28725664 28726048 -120057424 - MLT1H LTR MaLR -95 454 12 33 0 0 0 chr11 28726257 28726290 -120057182 + AT_rich Low_complexity Low_complexity 1 33 0 421 228 60 13 chr11 28728330 28728346 -120055126 - L1MA10 LINE L1 0 6334 6319 883 243 116 34 chr11 28728346 28728733 -120054739 - L1ME1 LINE L1 -5 6161 5743 219 333 0 11 chr11 28729506 28729596 -120053876 + CT-rich Low_complexity Low_complexity 2 90 0 246 220 0 0 chr11 28729902 28729961 -120053511 + (TA)n Simple_repeat Simple_repeat 1 59 0 192 277 169 15 chr11 28730708 28730773 -120052699 - L2 LINE L2 -80 3192 3118 213 65 0 0 chr11 28731814 28731845 -120051627 + (T)n Simple_repeat Simple_repeat 1 31 0 324 233 41 0 chr11 28731982 28732055 -120051417 + MIR SINE MIR 186 261 -1 2268 140 138 0 chr11 28732283 28732719 -120050753 - MLT1D LTR MaLR -3 502 7 181 309 103 0 chr11 28733690 28733758 -120049714 - L2 LINE L2 -12 3301 3227 366 352 38 19 chr11 28733789 28734002 -120049470 + MIR SINE MIR 40 256 -6 245 180 0 0 chr11 28735067 28735117 -120048355 + L1MC4 LINE L1 6654 6703 -1339 192 254 0 0 chr11 28735117 28735176 -120048296 + (TA)n Simple_repeat Simple_repeat 2 60 0 1905 143 50 28 chr11 28736220 28736584 -120046888 + THE1C LTR MaLR 4 375 0 316 206 11 11 chr11 28737004 28737096 -120046376 + (TA)n Simple_repeat Simple_repeat 2 93 0 351 208 52 0 chr11 28737173 28737269 -120046203 + MER103 DNA DNA 19 119 -47 349 181 14 0 chr11 28737525 28737597 -120045875 - MER5A DNA MER1_type -89 100 28 644 291 23 45 chr11 28740790 28740958 -120042514 - MIR SINE MIR 0 262 101 2167 103 86 12 chr11 28740958 28741297 -120042175 - THE1B LTR MaLR 0 364 1 644 291 23 45 chr11 28741297 28741393 -120042079 - MIR SINE MIR -161 101 4 2209 140 2 18 chr11 28742187 28742587 -120040885 - HERVH LTR ERV1 -3828 3885 3492 812 143 27 0 chr11 28742577 28742724 -120040748 - HERVH LTR ERV1 -4423 3290 3140 * 13084 116 16 25 chr11 28742703 28744771 -120038701 - HERVH LTR ERV1 -4718 2995 642 2802 26 0 0 chr11 28744771 28745084 -120038388 + AluYb8 SINE Alu 1 313 -5 13084 116 16 25 chr11 28745084 28745721 -120037751 - HERVH LTR ERV1 -7071 642 1 1048 81 52 12 chr11 28745723 28745896 -120037576 - LTR7 LTR ERV1 -2 448 269 814 96 0 16 chr11 28745899 28746024 -120037448 + LTR7 LTR ERV1 1 123 -327 679 208 0 0 chr11 28746395 28746525 -120036947 + MLT1F1 LTR MaLR 5 134 -433 754 227 0 0 chr11 28746525 28746657 -120036815 + FLAM_A SINE Alu 1 132 -10 1476 261 89 12 chr11 28746660 28747077 -120036395 + MLT1F1 LTR MaLR 119 567 0 2452 103 3 0 chr11 28747276 28747588 -120035884 + AluSp SINE Alu 1 313 0 401 297 80 0 chr11 28747672 28747810 -120035662 + MIR SINE MIR 4 152 -110 330 115 0 0 chr11 28748185 28748237 -120035235 + (CA)n Simple_repeat Simple_repeat 1 52 0 969 198 50 0 chr11 28749089 28749291 -120034181 - MER20 DNA MER1_type -4 215 4 437 333 67 13 chr11 28749306 28749531 -120033941 - MLT1K LTR MaLR -35 553 317 727 173 0 43 chr11 28749574 28749713 -120033759 + AluJb SINE Alu 164 296 -16 483 248 14 43 chr11 28751038 28751179 -120032293 + MIR SINE MIR 124 260 -2 342 267 32 72 chr11 28751477 28751666 -120031806 - MIR SINE MIR -61 147 3 259 369 10 0 chr11 28753048 28753151 -120030321 + MIR3 SINE MIR 54 157 -51 526 275 110 0 chr11 28753329 28753511 -120029961 - L2 LINE L2 0 3313 3112 27 29 0 0 chr11 28754155 28754189 -120029283 + AT_rich Low_complexity Low_complexity 1 34 0 2597 215 43 38 chr11 28754205 28754949 -120028523 + Charlie1a DNA MER1_type 1 748 -707 4203 183 62 21 chr11 28754949 28756221 -120027251 - L1MC2 LINE L1 -6 6338 5023 1329 241 137 7 chr11 28756346 28756885 -120026587 + L1M4 LINE L1 3593 4201 -1945 448 185 0 29 chr11 28756910 28757083 -120026389 + (TA)n Simple_repeat Simple_repeat 1 168 0 984 253 32 42 chr11 28757107 28757610 -120025862 + L1M4 LINE L1 4205 4702 -1444 12488 28 5 0 chr11 28757610 28759173 -120024299 - L1PA3 LINE L1 -883 5263 3693 6275 37 4 5 chr11 28759164 28759975 -120023497 + L1PA3 LINE L1 5254 6063 -92 * 183 342 139 30 chr11 28760445 28760840 -120022632 - L2 LINE L2 -578 2736 2299 645 299 40 26 chr11 28761155 28761503 -120021969 - L1MC/D LINE L1 -2038 5770 5418 259 346 110 0 chr11 28761743 28761870 -120021602 + MIR SINE MIR 48 188 -74 309 275 46 0 chr11 28763203 28763312 -120020160 + MER117 DNA MER1_type 44 157 -40 299 279 91 39 chr11 28763730 28763884 -120019588 + L2 LINE L2 3152 3313 0 21 0 0 0 chr11 28763982 28764003 -120019469 + AT_rich Low_complexity Low_complexity 1 21 0 2597 52 0 0 chr11 28764005 28764313 -120019159 + AluY SINE Alu 1 308 -3 45 29 0 14 chr11 28765084 28765121 -120018351 + AT_rich Low_complexity Low_complexity 1 38 -31 1316 146 9 162 chr11 28765121 28765449 -120018023 + AluJo SINE Alu 5 282 -30 45 29 0 14 chr11 28765449 28765481 -120017991 + AT_rich Low_complexity Low_complexity 38 69 0 189 325 38 25 chr11 28765686 28765766 -120017706 - MIR3 SINE MIR -5 203 123 307 331 45 32 chr11 28766240 28766397 -120017075 - MIR3 SINE MIR -47 161 3 240 274 68 48 chr11 28766534 28766680 -120016792 + MIR SINE MIR 114 262 0 611 326 98 45 chr11 28766792 28767314 -120016158 - L2 LINE L2 -1 3312 2765 230 313 113 0 chr11 28767940 28768055 -120015417 + MER117 DNA MER1_type 39 166 -31 908 303 98 23 chr11 28768480 28768958 -120014514 + LTR33 LTR ERVL 8 521 0 232 246 87 29 chr11 28768958 28769027 -120014445 + MIR SINE MIR 77 149 -113 198 0 0 0 chr11 28769872 28769894 -120013578 + (A)n Simple_repeat Simple_repeat 1 22 0 254 300 90 0 chr11 28769972 28770072 -120013400 - L2 LINE L2 -3 3269 3161 21 0 0 0 chr11 28770639 28770660 -120012812 + AT_rich Low_complexity Low_complexity 1 21 0 273 333 0 0 chr11 28770967 28771036 -120012436 + L2 LINE L2 3187 3255 -17 224 315 27 0 chr11 28771439 28771512 -120011960 + MIR SINE MIR 38 112 -150 547 313 7 0 chr11 28771861 28772008 -120011464 + MIR3 SINE MIR 54 201 -7 477 0 0 0 chr11 28773847 28773900 -120009572 + (TG)n Simple_repeat Simple_repeat 2 54 0 22 56 0 0 chr11 28774256 28774292 -120009180 + AT_rich Low_complexity Low_complexity 1 36 0 291 334 65 51 chr11 28774550 28774761 -120008711 + MIR SINE MIR 5 212 -50 203 250 0 0 chr11 28775030 28775070 -120008402 + G-rich Low_complexity Low_complexity 5 44 0 1576 172 35 7 chr11 28776487 28776772 -120006700 - AluJb SINE Alu -19 293 1 17151 199 41 21 chr11 28776818 28778667 -120004805 - L1P4 LINE L1 -654 6160 4351 258 32 0 0 chr11 28778667 28778698 -120004774 + (TG)n Simple_repeat Simple_repeat 2 32 0 17151 199 41 21 chr11 28778698 28779291 -120004181 - L1P4 LINE L1 -2463 4351 3772 1834 127 67 11 chr11 28779291 28779574 -120003898 - AluSq SINE Alu -14 299 1 17151 199 41 21 chr11 28779574 28783119 -120000353 - L1P4 LINE L1 -3042 3772 2 321 309 97 43 chr11 28783279 28783486 -119999986 - L1ME LINE L1 -619 5502 5285 2009 150 0 0 chr11 28783634 28783921 -119999551 - AluSx SINE Alu -25 287 1 739 317 114 30 chr11 28784173 28784637 -119998835 + L2 LINE L2 2811 3313 0 1685 183 63 166 chr11 28784740 28785545 -119997927 + LTR8A LTR ERV1 2 723 -4 198 246 31 15 chr11 28785662 28785727 -119997745 - MIR SINE MIR -124 138 73 534 277 191 10 chr11 28786279 28786476 -119996996 + MIR SINE MIR 41 262 0 1788 209 90 75 chr11 28786745 28787291 -119996181 - MLT2B3 LTR ERVL 0 554 1 239 41 82 0 chr11 28787343 28787392 -119996080 + CT-rich Low_complexity Low_complexity 3 55 0 642 209 9 0 chr11 28787392 28787507 -119995965 - AluSq/x SINE Alu -196 116 1 2240 87 0 0 chr11 28787810 28788087 -119995385 + AluY SINE Alu 2 278 -33 225 0 0 0 chr11 28788087 28788112 -119995360 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 450 332 70 20 chr11 28788485 28788684 -119994788 + MIR SINE MIR 23 231 -31 210 307 27 27 chr11 28789793 28789868 -119993604 - MIR SINE MIR -139 123 49 288 0 0 0 chr11 28790072 28790104 -119993368 + (TG)n Simple_repeat Simple_repeat 2 33 0 207 315 139 0 chr11 28790248 28790356 -119993116 + MIR SINE MIR 109 231 -31 662 219 31 12 chr11 28790443 28790603 -119992869 - MER106B DNA MER1_type -1 1058 896 287 305 16 56 chr11 28790740 28790989 -119992483 - L1ME LINE L1 -371 5750 5512 21 36 0 0 chr11 28791011 28791039 -119992433 + AT_rich Low_complexity Low_complexity 1 28 0 361 340 44 48 chr11 28792623 28792873 -119990599 - MIR SINE MIR -2 260 12 218 277 15 0 chr11 28793085 28793150 -119990322 + GA-rich Low_complexity Low_complexity 1 66 0 326 259 49 0 chr11 28793611 28793692 -119989780 - L1MC4 LINE L1 -1339 6703 6619 34 0 0 0 chr11 28794154 28794188 -119989284 + AT_rich Low_complexity Low_complexity 1 34 0 207 0 0 0 chr11 28794470 28794493 -119988979 + (T)n Simple_repeat Simple_repeat 1 23 0 2391 170 85 7 chr11 28794905 28795364 -119988108 - LTR42 LTR ERVL 0 495 1 27 0 0 0 chr11 28795716 28795743 -119987729 + AT_rich Low_complexity Low_complexity 1 27 0 1342 211 171 43 chr11 28796260 28796681 -119986791 + MLT1D LTR MaLR 28 502 -3 4443 122 27 6 chr11 28797402 28798072 -119985400 - LTR12 LTR ERV1 0 688 5 1254 189 75 71 chr11 28798088 28798622 -119984850 - pTR5 LTR ERV1 -1094 1344 741 239 321 115 57 chr11 28798779 28799327 -119984145 - L2 LINE L2 -910 2404 1825 377 343 0 0 chr11 28799430 28799573 -119983899 + (TA)n Simple_repeat Simple_repeat 2 144 0 1778 47 5 0 chr11 28799844 28800056 -119983416 + AluY SINE Alu 85 297 -14 2575 151 87 12 chr11 28800526 28801044 -119982428 - L1MB4 LINE L1 -1 6179 5623 244 206 22 120 chr11 28801097 28801115 -119982357 - MIR SINE MIR -160 102 84 2097 111 156 24 chr11 28801115 28801493 -119981979 - MSTA LTR MaLR 0 428 1 244 206 22 120 chr11 28801493 28801566 -119981906 - MIR SINE MIR -178 84 20 22 0 0 0 chr11 28802386 28802408 -119981064 + AT_rich Low_complexity Low_complexity 1 22 0 1302 181 60 81 chr11 28805074 28805456 -119978016 - MLT1A2 LTR MaLR 0 374 1 343 327 31 93 chr11 28806025 28806251 -119977221 - MIR SINE MIR -50 212 1 316 285 62 7 chr11 28806564 28806708 -119976764 + MER103 DNA DNA 15 166 0 251 361 44 25 chr11 28807541 28807699 -119975773 + MIR SINE MIR 74 234 -28 906 252 133 65 chr11 28808069 28808625 -119974847 - MLT1G1 LTR MaLR -1 594 1 269 269 39 67 chr11 28808893 28808997 -119974475 - MLT1G1-int LTR MaLR -233 1138 1038 574 247 5 63 chr11 28809575 28809765 -119973707 - MLT1G1-int LTR MaLR -769 602 424 419 260 77 99 chr11 28809819 28809912 -119973560 - MLT1G1 LTR MaLR -344 246 152 2259 105 0 6 chr11 28809912 28810225 -119973247 - AluSx SINE Alu -1 311 1 419 260 77 99 chr11 28810225 28810407 -119973065 - MLT1G1 LTR MaLR -438 152 1 184 270 95 14 chr11 28810460 28810534 -119972938 + L2 LINE L2 2156 2235 -1079 212 361 0 10 chr11 28810572 28810669 -119972803 - MIR SINE MIR -3 259 164 2313 96 0 0 chr11 28811357 28811650 -119971822 + AluSc SINE Alu 1 293 -16 1540 211 82 42 chr11 28811985 28812459 -119971013 - MLT1D LTR MaLR 0 505 13 429 20 0 0 chr11 28812596 28812646 -119970826 + (CA)n Simple_repeat Simple_repeat 1 50 0 1682 168 45 10 chr11 28812646 28812938 -119970534 - AluJb SINE Alu -10 302 1 567 314 13 26 chr11 28813400 28813626 -119969846 + MIR SINE MIR 40 262 0 437 284 21 34 chr11 28814495 28814648 -119968824 + MIR3 SINE MIR 8 157 -67 1689 196 0 3 chr11 28815206 28815497 -119967975 - AluJo SINE Alu -22 290 1 192 349 72 0 chr11 28815576 28815659 -119967813 - MIR3 SINE MIR -54 154 66 1439 279 61 10 chr11 28815730 28816125 -119967347 + LTR16C LTR ERVL 76 490 -1 335 333 94 42 chr11 28818241 28818433 -119965039 - MIR SINE MIR -50 212 11 334 312 165 0 chr11 28819210 28819380 -119964092 + MIR SINE MIR 35 232 -30 411 21 0 0 chr11 28819462 28819510 -119963962 + (CA)n Simple_repeat Simple_repeat 2 49 0 360 343 96 20 chr11 28819514 28819765 -119963707 + L3 LINE CR1 981 1250 -327 251 248 79 10 chr11 28821066 28821167 -119962305 - L1ME4a LINE L1 -65 6056 5949 891 201 13 36 chr11 28821251 28821475 -119961997 - L1MA10 LINE L1 -2 6332 6114 1128 188 62 23 chr11 28821480 28821736 -119961736 - Tigger2 DNA MER2_type -1 2717 2452 2429 116 60 3 chr11 28821745 28822126 -119961346 - MLT2A1 LTR ERVL -41 403 1 19420 154 23 25 chr11 28822126 28822421 -119961051 - L1P4 LINE L1 -596 6229 5935 2614 70 75 0 chr11 28822421 28822779 -119960693 - L1PA8 LINE L1 -6 6166 5782 19420 154 23 25 chr11 28822779 28826393 -119957079 - L1P4 LINE L1 -890 5935 2306 274 77 0 0 chr11 28826533 28826572 -119956900 + L1PA13 LINE L1 2237 2275 -4512 * 376 117 12 31 chr11 28826570 28826656 -119956816 - L1P4 LINE L1 -4575 2214 2132 195 42 0 0 chr11 28826658 28826682 -119956790 + (T)n Simple_repeat Simple_repeat 1 24 0 8444 145 28 14 chr11 28826697 28827742 -119955730 - Tigger2 DNA MER2_type -1249 1469 398 2884 36 39 0 chr11 28827742 28828098 -119955374 - L1PA4 LINE L1 -4 6151 5782 8444 145 28 14 chr11 28828098 28828501 -119954971 - Tigger2 DNA MER2_type -2320 398 2 3239 191 50 58 chr11 28828502 28828845 -119954627 - L1MA9 LINE L1 -201 6111 5767 216 97 0 0 chr11 28828845 28828876 -119954596 + (TG)n Simple_repeat Simple_repeat 1 31 0 3239 191 50 58 chr11 28828876 28829750 -119953722 - L1MA9 LINE L1 -545 5767 4918 1735 191 70 25 chr11 28830018 28830523 -119952949 - L1P5 LINE L1 -704 5452 4918 368 298 53 18 chr11 28830598 28830769 -119952703 - L1ME LINE L1 -346 5775 5599 23 78 0 0 chr11 28831024 28831075 -119952397 + AT_rich Low_complexity Low_complexity 1 51 0 775 291 43 4 chr11 28831089 28831323 -119952149 + MIR SINE MIR 7 249 -13 4376 88 12 5 chr11 28831542 28832181 -119951291 - L1P LINE L1 -763 5383 4740 3227 72 12 2 chr11 28832182 28832610 -119950862 + L1PA7 LINE L1 5710 6141 -13 4804 33 7 0 chr11 28833883 28834457 -119949015 - L1PA4 LINE L1 -1 6154 5577 1288 285 99 8 chr11 28834487 28834870 -119948602 - LTR16C LTR ERVL 0 491 74 429 284 66 69 chr11 28834914 28835203 -119948269 + L1ME4a LINE L1 5646 5933 -188 247 338 162 56 chr11 28836870 28837210 -119946262 + L2 LINE L2 2897 3272 0 2052 192 0 6 chr11 28838074 28838433 -119945039 - MLT1A1 LTR MaLR -8 357 1 330 275 182 42 chr11 28838536 28838559 -119944913 + L2 LINE L2 2643 2661 -652 854 242 27 27 chr11 28838559 28838778 -119944694 + MER20 DNA MER1_type 1 219 0 330 275 182 42 chr11 28838778 28839239 -119944233 + L2 LINE L2 2661 3312 -1 307 335 72 20 chr11 28839314 28839466 -119944006 - L2 LINE L2 -368 2946 2787 939 144 0 0 chr11 28839586 28839725 -119943747 - FLAM_C SINE Alu -4 139 1 2696 206 20 5 chr11 28839874 28840465 -119943007 - L1MA8 LINE L1 -5 6286 5687 249 325 39 13 chr11 28840819 28840896 -119942576 - MIR SINE MIR -150 112 34 743 241 156 56 chr11 28840900 28841240 -119942232 - MLT1A2 LTR MaLR 0 374 1 463 243 95 18 chr11 28843233 28843471 -119940001 + L1M4b LINE L1 4 307 -6552 22 0 0 0 chr11 28844753 28844775 -119938697 + AT_rich Low_complexity Low_complexity 1 22 0 637 267 120 10 chr11 28844789 28845081 -119938391 + L1M4b LINE L1 1760 2083 -4864 2148 128 13 0 chr11 28845338 28845644 -119937828 - AluSq SINE Alu -3 310 1 1451 303 113 18 chr11 28845799 28846660 -119936812 - L2 LINE L2 -4 3309 2375 1001 183 58 133 chr11 28846750 28847253 -119936219 - MER4C LTR ERV1 0 465 1 913 212 5 0 chr11 28847266 28847455 -119936017 - MER4C-int LTR ERV1 -14 6584 6395 10649 163 65 53 chr11 28847608 28850552 -119932920 - MER4C-int LTR ERV1 -335 5996 1494 1756 184 3 13 chr11 28850552 28850856 -119932616 + AluJb SINE Alu 1 301 -11 10649 163 65 53 chr11 28850856 28851184 -119932288 - MER4C-int LTR ERV1 -4837 1494 1171 2190 203 69 109 chr11 28851184 28851908 -119931564 - LTR8A LTR ERV1 0 727 33 448 281 27 0 chr11 28851967 28852113 -119931359 - MER4-int LTR ERV1 -4629 1969 1820 360 174 101 46 chr11 28852295 28852404 -119931068 - MER4-int LTR ERV1 -4932 1399 1285 234 319 14 0 chr11 28852406 28852478 -119930994 - tRNA-Glu-GAG tRNA tRNA 0 75 3 656 115 95 54 chr11 28852532 28852680 -119930792 - MER4C-int LTR ERV1 -5184 1147 994 552 233 181 20 chr11 28852993 28853291 -119930181 - MER4C-int LTR ERV1 -6169 429 2 597 224 172 62 chr11 28853295 28853714 -119929758 - MER4C LTR ERV1 0 465 1 235 244 37 24 chr11 28853962 28854044 -119929428 + LTR50 LTR ERVL 379 461 -334 * 279 282 58 51 chr11 28854027 28854099 -119929373 + LTR33A LTR ERVL 343 413 -110 2162 119 7 13 chr11 28854099 28854409 -119929063 - AluSx SINE Alu -4 308 1 279 282 58 51 chr11 28854409 28854492 -119928980 + LTR33A LTR ERVL 413 499 -24 261 292 22 11 chr11 28855712 28855801 -119927671 + MLT1L LTR MaLR 1 90 -525 478 263 113 73 chr11 28855834 28856081 -119927391 + MLT1L LTR MaLR 340 596 -19 457 298 25 26 chr11 28856304 28856509 -119926963 + MER74A LTR ERVL 339 604 -18 276 143 16 48 chr11 28857296 28857359 -119926113 - HERVFH21 LTR ERV1 -3048 3481 3421 202 317 0 24 chr11 28857895 28857977 -119925495 + MIR SINE MIR 183 262 0 230 179 36 0 chr11 28859415 28859471 -119924001 - LTR37A LTR ERV1 0 426 369 5823 95 17 22 chr11 28859481 28861210 -119922262 + L1PA13 LINE L1 4407 6144 -19 411 306 16 0 chr11 28861213 28861337 -119922135 - MIR SINE MIR -135 127 2 1599 188 17 3 chr11 28861471 28861769 -119921703 + AluJb SINE Alu 1 302 -10 247 267 33 83 chr11 28861769 28861889 -119921583 + L2 LINE L2 3157 3270 -2 301 301 71 18 chr11 28862307 28862420 -119921052 + L2 LINE L2 3193 3311 -2 6529 21 9 0 chr11 28862934 28863697 -119919775 - L1PA4 LINE L1 -4 6151 5382 5099 21 0 2 chr11 28863695 28864310 -119919162 + L1PA4 LINE L1 4777 5390 -756 * 595 309 41 38 chr11 28864316 28864636 -119918836 - LTR16C LTR ERVL -2 489 169 685 348 63 3 chr11 28865002 28865335 -119918137 + HERVL LTR ERVL 4044 4396 -1258 669 318 60 37 chr11 28865416 28865932 -119917540 - HERV16 LTR ERVL -3244 2241 1772 269 345 66 30 chr11 28866274 28866471 -119917001 - HERV16 LTR ERVL -4790 206 3 679 254 28 0 chr11 28867268 28867410 -119916062 + MER5A DNA MER1_type 43 188 -1 291 270 151 13 chr11 28867731 28867890 -119915582 + MLT1E LTR MaLR 7 187 -406 * 1307 231 44 51 chr11 28867867 28868039 -119915433 + MLT1E1 LTR MaLR 103 275 -379 1645 196 3 23 chr11 28868039 28868340 -119915132 + AluJo SINE Alu 1 295 -17 1307 231 44 51 chr11 28868340 28868631 -119914841 + MLT1E1 LTR MaLR 275 654 0 268 256 68 51 chr11 28869329 28869446 -119914026 - L2 LINE L2 -5 3308 3190 184 264 64 96 chr11 28869708 28869833 -119913639 + L3 LINE CR1 1042 1162 -415 252 265 0 48 chr11 28870062 28870145 -119913327 - MER5B DNA MER1_type -79 99 21 197 250 0 67 chr11 28870171 28870231 -119913241 + L3 LINE CR1 1349 1404 -173 1170 301 41 12 chr11 28870650 28871065 -119912407 + LTR16A LTR ERVL 18 444 -6 462 274 0 0 chr11 28871553 28871659 -119911813 + MIR SINE MIR 154 259 -3 232 235 0 0 chr11 28872464 28872515 -119910957 + (TAG)n Simple_repeat Simple_repeat 3 53 0 297 237 149 35 chr11 28872541 28872655 -119910817 + MLT1L LTR MaLR 1 127 -488 21 36 0 0 chr11 28874293 28874321 -119909151 + AT_rich Low_complexity Low_complexity 1 28 0 1599 252 47 35 chr11 28874579 28875175 -119908297 - L1ME1 LINE L1 -16 6386 5784 1412 157 17 13 chr11 28875196 28875432 -119908040 - AluSx SINE Alu -13 299 63 1005 202 54 32 chr11 28875432 28875827 -119907645 - L1ME1 LINE L1 -688 5732 5332 975 199 35 0 chr11 28875829 28876030 -119907442 - L1ME1 LINE L1 -4790 1594 1387 884 194 20 20 chr11 28876241 28876437 -119907035 + MER61A LTR ERV1 1 196 -147 11500 237 51 20 chr11 28876439 28881124 -119902348 - L1P4 LINE L1 -415 6711 1757 3704 177 64 42 chr11 28881123 28881932 -119901540 - L1ME1 LINE L1 -5447 937 111 * 301 221 7 114 chr11 28881933 28882073 -119901399 - L1M4 LINE L1 -1446 5198 5074 439 256 34 54 chr11 28882080 28882310 -119901162 - L1M2 LINE L1 -4256 1960 1610 2737 111 54 5 chr11 28882388 28882811 -119900661 - MLT2A1 LTR ERVL 0 444 1 237 189 158 11 chr11 28882957 28883052 -119900420 - L1M4 LINE L1 -4968 1574 1466 4531 193 58 46 chr11 28883064 28885168 -119898304 - L1MB1 LINE L1 -26 6142 4010 441 0 0 0 chr11 28885267 28885316 -119898156 + (TG)n Simple_repeat Simple_repeat 1 49 0 415 331 25 6 chr11 28886136 28886296 -119897176 + MER117 DNA MER1_type 3 165 -32 27 29 0 0 chr11 28886545 28886579 -119896893 + AT_rich Low_complexity Low_complexity 1 34 0 25 75 0 0 chr11 28886723 28886776 -119896696 + AT_rich Low_complexity Low_complexity 1 53 0 1861 178 55 59 chr11 28886867 28887323 -119896149 - L1MB5 LINE L1 -59 6115 5662 210 275 220 28 chr11 28887935 28888044 -119895428 + L2 LINE L2 2677 2806 -508 337 319 34 0 chr11 28888080 28888199 -119895273 + L2 LINE L2 3191 3313 0 360 342 136 26 chr11 28888204 28888631 -119894841 + L2 LINE L2 2838 3311 -2 356 288 62 25 chr11 28889086 28889246 -119894226 + MIR SINE MIR 17 182 -80 211 335 13 42 chr11 28889292 28889479 -119893993 - L2 LINE L2 -336 2977 2795 528 129 47 6 chr11 28889645 28889816 -119893656 + (TA)n Simple_repeat Simple_repeat 1 178 0 230 265 0 0 chr11 28889915 28889964 -119893508 + MIR SINE MIR 74 122 -140 288 257 78 64 chr11 28890164 28890352 -119893120 + MIR SINE MIR 31 216 -46 283 267 104 0 chr11 28890671 28890759 -119892713 - MIR SINE MIR -67 141 50 3739 220 10 1 chr11 28890763 28891625 -119891847 - L1PA16 LINE L1 -1488 4658 3789 * 5013 171 15 9 chr11 28891621 28893093 -119890379 + L1PA16 LINE L1 4653 6131 -35 24 32 0 0 chr11 28893093 28893124 -119890348 + AT_rich Low_complexity Low_complexity 1 31 0 362 318 134 22 chr11 28895842 28896021 -119887451 + MIR SINE MIR 56 254 -8 230 79 0 26 chr11 28896022 28896060 -119887412 + (ATGGTG)n Simple_repeat Simple_repeat 2 38 0 2507 157 25 0 chr11 28896417 28896818 -119886654 + LTR57 LTR ERVL 1 411 0 200 132 189 0 chr11 28896912 28896965 -119886507 - L2 LINE L2 -9 3263 3201 21578 151 21 12 chr11 28897494 28899782 -119883690 - L1PA10 LINE L1 0 6168 3903 2557 107 28 6 chr11 28899782 28900138 -119883334 - THE1B LTR MaLR 0 364 1 9772 122 37 38 chr11 28900138 28901720 -119881752 - THE1B-int LTR MaLR 0 1580 1 2454 139 0 6 chr11 28901720 28902086 -119881386 - THE1B LTR MaLR 0 364 1 21578 151 21 12 chr11 28902086 28902854 -119880618 - L1PA10 LINE L1 -2265 3903 3144 180 77 0 0 chr11 28902854 28902880 -119880592 + (TTG)n Simple_repeat Simple_repeat 3 28 0 21578 151 21 12 chr11 28902880 28904689 -119878783 - L1PA10 LINE L1 -3024 3144 1259 5299 240 42 58 chr11 28904794 28906521 -119876951 - L1P3 LINE L1 -4753 1708 9 187 271 57 29 chr11 28906817 28906887 -119876585 - L2 LINE L2 -1 3312 3241 284 349 8 31 chr11 28908694 28908823 -119874649 - L2 LINE L2 -201 3071 2946 412 224 43 9 chr11 28908971 28909087 -119874385 + MER53 DNA DNA 1 120 -69 305 333 0 0 chr11 28909087 28909177 -119874295 + L1MC4 LINE L1 6614 6703 -1339 301 308 11 0 chr11 28909097 28909188 -119874284 - L1MC4 LINE L1 -1339 6703 6612 * 437 206 199 23 chr11 28909653 28909784 -119873688 + MER58C DNA MER1_type 62 215 0 518 299 52 17 chr11 28909805 28909979 -119873493 + ERVL LTR ERVL 4909 5088 -676 612 270 108 67 chr11 28910356 28910790 -119872682 + LTR16A1 LTR ERVL 2 453 -4 1153 309 55 23 chr11 28910799 28911274 -119872198 + L2 LINE L2 2804 3293 -20 450 0 0 0 chr11 28911491 28911541 -119871931 + (TA)n Simple_repeat Simple_repeat 1 50 0 737 275 15 25 chr11 28911557 28911757 -119871715 - MLT1J1 LTR MaLR -18 428 231 192 77 0 0 chr11 28911808 28911834 -119871638 + (TC)n Simple_repeat Simple_repeat 2 27 0 855 55 0 0 chr11 28911837 28911946 -119871526 + (TA)n Simple_repeat Simple_repeat 1 109 0 399 221 93 43 chr11 28913229 28913369 -119870103 + MLT1H LTR MaLR 403 549 0 590 280 40 44 chr11 28914305 28914555 -119868917 - MIR SINE MIR -1 261 13 19431 158 46 18 chr11 28914881 28922370 -119861102 + L1MA1 LINE L1 16 7717 -4 296 321 88 22 chr11 28923345 28923482 -119859990 - MIR SINE MIR 0 262 117 844 298 89 50 chr11 28923854 28924257 -119859215 + LTR16C LTR ERVL 70 488 -3 286 273 192 6 chr11 28924295 28924467 -119859005 - L2 LINE L2 -504 2810 2607 651 318 106 42 chr11 28924552 28925024 -119858448 - LTR33 LTR ERVL -8 513 12 189 0 0 0 chr11 28925207 28925228 -119858244 + (GGAA)n Simple_repeat Simple_repeat 1 21 0 284 276 45 21 chr11 28925741 28925858 -119857614 + MIR SINE MIR 3 122 -94 251 359 129 6 chr11 28926055 28926225 -119857247 + MIR SINE MIR 17 207 -55 200 228 0 35 chr11 28926299 28926356 -119857116 + CT-rich Low_complexity Low_complexity 6 60 0 589 235 140 17 chr11 28926405 28926584 -119856888 - MIR SINE MIR -34 228 28 181 73 24 49 chr11 28927407 28927448 -119856024 + (TTCC)n Simple_repeat Simple_repeat 3 42 0 1068 209 15 5 chr11 28927474 28927680 -119855792 + AluJb SINE Alu 87 294 -18 347 240 188 0 chr11 28928259 28928355 -119855117 + L2 LINE L2 3159 3272 0 240 257 14 29 chr11 28929538 28929608 -119853864 + CT-rich Low_complexity Low_complexity 4 72 0 1363 119 38 17 chr11 28930076 28930311 -119853161 - L1P4 LINE L1 -552 5609 5370 190 227 45 0 chr11 28930699 28930787 -119852685 + (CATATA)n Simple_repeat Simple_repeat 5 96 0 206 206 29 15 chr11 28930837 28930905 -119852567 + (CATATA)n Simple_repeat Simple_repeat 4 72 0 521 243 105 52 chr11 28931791 28932001 -119851471 - MIR SINE MIR -27 235 15 23 0 0 0 chr11 28932657 28932680 -119850792 + AT_rich Low_complexity Low_complexity 1 23 0 180 111 0 0 chr11 28932867 28932894 -119850578 + (T)n Simple_repeat Simple_repeat 1 27 0 273 304 116 7 chr11 28933195 28933333 -119850139 + L2 LINE L2 2222 2374 -940 7335 32 8 0 chr11 28933340 28934214 -119849258 - L1PA3 LINE L1 0 6155 5275 27379 70 2 17 chr11 28934214 28938703 -119844769 - L1P LINE L1 -1701 4445 3 334 273 63 49 chr11 28938729 28938816 -119844656 + L2 LINE L2 2394 2485 -829 1827 154 3 39 chr11 28938816 28939180 -119844292 - L1PA14 LINE L1 0 6161 5811 334 273 63 49 chr11 28939180 28939235 -119844237 + L2 LINE L2 2485 2538 -776 429 229 0 0 chr11 28939334 28939439 -119844033 + (TATATG)n Simple_repeat Simple_repeat 1 105 0 669 243 33 0 chr11 28939780 28939932 -119843540 + MER63A DNA MER1_type 53 209 -1 185 116 0 47 chr11 28940190 28940233 -119843239 + (TTG)n Simple_repeat Simple_repeat 2 42 0 235 243 108 27 chr11 28940246 28940320 -119843152 - L1MEd LINE L1 -5600 519 440 618 258 63 0 chr11 28940661 28940820 -119842652 + MER58B DNA MER1_type 173 341 0 2020 215 43 53 chr11 28940831 28941524 -119841948 - Charlie1 DNA MER1_type -3 2758 2073 1291 238 78 17 chr11 28941526 28941870 -119841602 - MLT1A1 LTR MaLR 0 365 1 3011 255 82 4 chr11 28941891 28942923 -119840549 + L1ME LINE L1 3089 4201 -1945 274 278 0 0 chr11 28942942 28943014 -119840458 + (TA)n Simple_repeat Simple_repeat 1 72 0 845 110 0 0 chr11 28943028 28943169 -119840303 + AluSp/q SINE Alu 168 308 0 256 292 108 29 chr11 28993781 28994021 -119789451 + L1ME LINE L1 5635 5893 -228 25 51 0 0 chr11 28994145 28994184 -119789288 + AT_rich Low_complexity Low_complexity 1 39 0 269 319 78 30 chr11 28994425 28994591 -119788881 + MIR3 SINE MIR 28 201 -7 750 257 16 21 chr11 28994861 28995048 -119788424 - MER5A DNA MER1_type -3 186 1 355 298 44 22 chr11 28995048 28995229 -119788243 + L1MC4a LINE L1 5646 5830 -1978 21 0 0 0 chr11 28995527 28995548 -119787924 + AT_rich Low_complexity Low_complexity 1 21 0 561 224 22 98 chr11 28995869 28996061 -119787411 + MIR SINE MIR 60 234 -28 21 57 0 0 chr11 28996329 28996364 -119787108 + AT_rich Low_complexity Low_complexity 1 35 0 2240 132 0 0 chr11 28996571 28996881 -119786591 - AluSx SINE Alu -2 310 1 356 277 40 10 chr11 28997460 28997561 -119785911 - MER5A DNA MER1_type -1 188 85 1962 166 78 68 chr11 28998055 28998555 -119784917 + MLT1D LTR MaLR 1 505 0 189 0 0 0 chr11 28998597 28998618 -119784854 + (TA)n Simple_repeat Simple_repeat 1 21 0 1891 169 7 0 chr11 28999588 28999896 -119783576 + AluJo SINE Alu 1 310 -2 261 348 0 0 chr11 29000663 29000752 -119782720 + L2 LINE L2 3225 3313 0 453 218 92 21 chr11 29000997 29001139 -119782333 + MER91B DNA MER1_type 3 154 -36 182 200 217 17 chr11 29001596 29001656 -119781816 - L2 LINE L2 -2 3270 3199 310 297 194 33 chr11 29001795 29002140 -119781332 - L2 LINE L2 -251 3021 2637 410 260 0 21 chr11 29003465 29003561 -119779911 - MIR SINE MIR -76 186 93 603 244 98 6 chr11 29003779 29003943 -119779529 - MIR SINE MIR 0 262 84 274 106 200 59 chr11 29004276 29004361 -119779111 + MER113 DNA MER1_type? 114 210 -311 194 321 0 0 chr11 29004469 29004522 -119778950 + MIR SINE MIR 206 258 -4 203 171 0 0 chr11 29004522 29004557 -119778915 + CT-rich Low_complexity Low_complexity 4 38 0 517 231 0 17 chr11 29004816 29004933 -119778539 - L1ME LINE L1 -619 5547 5433 1813 159 24 42 chr11 29004935 29005252 -119778220 - L1MB7 LINE L1 -16 6168 5858 2351 67 0 10 chr11 29005252 29005549 -119777923 + AluY SINE Alu 2 295 -16 1813 159 24 42 chr11 29005549 29005608 -119777864 - L1MB7 LINE L1 -326 5858 5799 544 211 0 0 chr11 29005608 29005703 -119777769 + MER82 DNA MER2_type 2 96 -557 435 306 65 15 chr11 29005720 29005919 -119777553 - MIR SINE MIR -52 210 2 926 224 5 52 chr11 29005945 29006155 -119777317 + MER82 DNA MER2_type 435 634 -19 17903 89 4 8 chr11 29006164 29009364 -119774108 - L1PA7 LINE L1 -2 6152 2954 14112 142 21 111 chr11 29009467 29012666 -119770806 - L1PA7 LINE L1 -3225 2921 12 6136 110 32 9 chr11 29012677 29012712 -119770760 + L1P5 LINE L1 965 998 -5206 1943 150 10 0 chr11 29012712 29013019 -119770453 + AluSg SINE Alu 1 310 0 6136 110 32 9 chr11 29013019 29013983 -119769489 + L1P5 LINE L1 998 1977 -4227 13882 202 8 35 chr11 29014086 29016675 -119766797 + L1P5 LINE L1 2379 4853 -1355 2247 115 0 3 chr11 29016675 29016979 -119766493 + AluSx SINE Alu 8 310 -2 13882 202 8 35 chr11 29016979 29017941 -119765531 + L1P5 LINE L1 4853 5839 -369 441 0 0 0 chr11 29017941 29017990 -119765482 + (CA)n Simple_repeat Simple_repeat 2 50 0 2397 113 62 11 chr11 29018241 29018614 -119764858 - MER65A LTR ERV1 0 445 54 872 108 11 38 chr11 29018631 29018816 -119764656 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 232 121 0 0 chr11 29018820 29018853 -119764619 - MER65B LTR ERV1 -498 33 1 281 335 35 28 chr11 29020399 29020543 -119762929 + MIR SINE MIR 22 166 -67 425 37 0 0 chr11 29021624 29021678 -119761794 + MADE1 DNA Mariner 27 80 0 2311 72 7 3 chr11 29021705 29021997 -119761475 + AluSg SINE Alu 1 293 -17 188 319 32 21 chr11 29022612 29022706 -119760766 - MIR SINE MIR 0 262 168 433 216 98 52 chr11 29022772 29022832 -119760640 - MIR SINE MIR -102 160 104 1868 167 0 10 chr11 29022832 29023143 -119760329 + AluJo SINE Alu 1 308 -4 433 216 98 52 chr11 29023143 29023235 -119760237 - MIR SINE MIR -158 104 1 530 260 0 52 chr11 29023977 29024131 -119759341 - MIR SINE MIR 0 262 117 1328 241 78 16 chr11 29024195 29024630 -119758842 + LTR33 LTR ERVL 56 517 -4 341 327 18 9 chr11 29024633 29024743 -119758729 - MIR SINE MIR -150 112 2 331 250 46 37 chr11 29025072 29025180 -119758292 + MER5B DNA MER1_type 67 175 -3 268 289 13 0 chr11 29025717 29025793 -119757679 + MIR SINE MIR 66 142 -66 975 164 23 0 chr11 29025801 29025972 -119757500 + MER5A DNA MER1_type 1 175 -14 267 233 206 0 chr11 29026110 29026183 -119757289 + L2 LINE L2 2927 3014 -299 354 233 98 38 chr11 29026257 29026390 -119757082 + L2 LINE L2 3135 3275 -38 1097 184 19 19 chr11 29026392 29026598 -119756874 + MER3 DNA MER1_type 1 206 -3 21 0 0 0 chr11 29026783 29026804 -119756668 + AT_rich Low_complexity Low_complexity 1 21 0 297 244 85 0 chr11 29027122 29027204 -119756268 + MIR SINE MIR 85 173 -89 266 256 33 33 chr11 29027521 29027611 -119755861 + MIR3 SINE MIR 118 207 -1 581 304 93 39 chr11 29027790 29028122 -119755350 - LTR16C LTR ERVL 0 491 142 419 293 73 56 chr11 29028614 29028972 -119754500 - HERV16 LTR ERVL -4590 406 43 394 286 58 35 chr11 29028979 29029221 -119754251 - LTR16C LTR ERVL -5 486 194 1431 186 4 0 chr11 29029497 29029733 -119753739 - AluJb SINE Alu -18 294 58 232 196 20 0 chr11 29029758 29029809 -119753663 - MER94 DNA DNA -78 56 5 189 74 0 0 chr11 29029817 29029844 -119753628 + (TC)n Simple_repeat Simple_repeat 1 27 0 234 0 0 0 chr11 29029886 29029912 -119753560 + (CA)n Simple_repeat Simple_repeat 2 27 0 752 176 0 0 chr11 29030478 29030597 -119752875 - MER2 DNA MER2_type -226 119 1 21 36 0 0 chr11 29030828 29030856 -119752616 + AT_rich Low_complexity Low_complexity 1 28 0 315 311 29 0 chr11 29031021 29031124 -119752348 + MIR SINE MIR 154 259 -3 254 267 20 69 chr11 29032402 29032604 -119750868 + L1ME4a LINE L1 5887 6078 -43 1732 181 10 16 chr11 29033081 29033385 -119750087 + AluJo SINE Alu 1 302 -10 429 336 83 17 chr11 29033565 29033913 -119749559 + L2 LINE L2 2456 2826 -488 286 353 41 8 chr11 29034495 29034617 -119748855 + L2 LINE L2 1834 1959 -1355 22 0 0 0 chr11 29034695 29034717 -119748755 + AT_rich Low_complexity Low_complexity 1 22 0 350 282 201 7 chr11 29035773 29035922 -119747550 + MER5A DNA MER1_type 9 186 -3 326 291 120 13 chr11 29036015 29036173 -119747299 - MIR SINE MIR -73 189 15 768 18 64 0 chr11 29036722 29036832 -119746640 + (TTTTC)n Simple_repeat Simple_repeat 4 120 0 2402 95 0 0 chr11 29037016 29037320 -119746152 + AluSp SINE Alu 1 304 -9 1002 176 9 69 chr11 29037676 29037909 -119745563 - MER20 DNA MER1_type 0 219 1 189 184 41 20 chr11 29038819 29038868 -119744604 - MIR SINE MIR -119 143 94 197 204 143 0 chr11 29039129 29039178 -119744294 - L2 LINE L2 -61 3252 3197 284 264 28 0 chr11 29039993 29040065 -119743407 - MIR3 SINE MIR -30 178 105 23 0 0 0 chr11 29040474 29040497 -119742975 + AT_rich Low_complexity Low_complexity 1 23 0 1919 124 53 3 chr11 29041062 29041345 -119742127 + AluSx SINE Alu 1 297 -15 1882 136 0 0 chr11 29041567 29041818 -119741654 - AluSq SINE Alu -62 251 1 289 236 56 0 chr11 29041849 29041938 -119741534 - MER94 DNA DNA -40 94 1 517 312 65 13 chr11 29043193 29043347 -119740125 + MIR3 SINE MIR 30 191 -17 2813 238 61 30 chr11 29045346 29046378 -119737094 - L1MDa LINE L1 -5058 1482 342 615 233 5 37 chr11 29046378 29046593 -119736879 + L1M4 LINE L1 4999 5206 -940 2281 125 0 0 chr11 29046593 29046898 -119736574 + AluSx SINE Alu 1 305 -7 328 118 0 20 chr11 29048258 29048309 -119735163 + (TTCC)n Simple_repeat Simple_repeat 1 50 0 1085 110 40 50 chr11 29048521 29048721 -119734751 + MSTB1 LTR MaLR 1 198 -234 1103 166 205 46 chr11 29048724 29048983 -119734489 + AluJo SINE Alu 1 300 -2 267 103 0 0 chr11 29048987 29049026 -119734446 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 2314 104 3 0 chr11 29049031 29049339 -119734133 + AluY SINE Alu 1 309 -2 1064 139 49 69 chr11 29049350 29049548 -119733924 + MSTB1 LTR MaLR 193 387 -45 2484 114 5 19 chr11 29049548 29049917 -119733555 - THE1B LTR MaLR 0 364 1 1064 139 49 69 chr11 29049917 29049963 -119733509 + MSTB1 LTR MaLR 387 432 0 349 208 13 0 chr11 29050462 29050539 -119732933 - MER116 DNA Mariner 0 80 3 393 267 125 40 chr11 29050635 29050811 -119732661 + MIR SINE MIR 54 244 -18 425 241 105 8 chr11 29050930 29051063 -119732409 - MIR3 SINE MIR -18 190 45 439 273 107 0 chr11 29051301 29051451 -119732021 + MER117 DNA MER1_type 1 166 -31 414 294 40 48 chr11 29051453 29051579 -119731893 + MER5A DNA MER1_type 65 189 0 1717 176 127 28 chr11 29051859 29052284 -119731188 + MLT1C LTR MaLR 1 467 0 392 283 26 9 chr11 29052299 29052412 -119731060 - MIR SINE MIR -101 161 47 1866 164 7 0 chr11 29053193 29053485 -119729987 - AluJo SINE Alu -18 294 1 472 253 324 17 chr11 29054488 29054784 -119728688 - MLT1J2 LTR MaLR 0 450 64 4263 156 34 86 chr11 29055226 29055942 -119727530 + L1MCa LINE L1 21 671 -5755 796 159 46 7 chr11 29055942 29056093 -119727379 + L1PA16 LINE L1 6007 6163 -3 4263 156 34 86 chr11 29056093 29056392 -119727080 + L1MCa LINE L1 671 984 -5442 805 315 116 19 chr11 29056530 29057096 -119726376 - L2 LINE L2 -230 3083 2469 393 294 27 41 chr11 29057150 29057296 -119726176 - MIR3 SINE MIR -64 144 1 437 316 0 13 chr11 29057520 29057675 -119725797 - MIR SINE MIR -26 236 84 2463 233 38 0 chr11 29058548 29059080 -119724392 - MLT1H1 LTR MaLR -3 552 1 433 213 98 25 chr11 29059325 29059447 -119724025 + MIR SINE MIR 131 261 -1 727 362 32 12 chr11 29060049 29060543 -119722929 + HERV16 LTR ERVL 1024 1527 -3469 490 312 20 15 chr11 29060650 29060849 -119722623 + HERV16 LTR ERVL 1726 1925 -3729 1059 315 75 30 chr11 29060942 29062124 -119721348 + HERV16 LTR ERVL 2166 3416 -2041 565 316 12 21 chr11 29062300 29062626 -119720846 + HERV16 LTR ERVL 3623 3945 -1709 789 324 55 33 chr11 29062700 29063791 -119719681 + HERV16 LTR ERVL 4130 5337 -427 2325 119 39 66 chr11 29063958 29064141 -119719331 + L1MCa LINE L1 1001 1187 -5239 935 89 0 0 chr11 29064141 29064264 -119719208 - L1PA16 LINE L1 -9 6157 6035 2325 119 39 66 chr11 29064264 29064593 -119718879 + L1MCa LINE L1 1187 1499 -4927 1665 214 55 11 chr11 29064593 29064972 -119718500 + MSTD LTR MaLR 1 396 0 4022 248 57 24 chr11 29064972 29066280 -119717192 + MSTD-int LTR MaLR 4 1385 -350 909 199 157 51 chr11 29066286 29066389 -119717083 + MSTD LTR MaLR 52 143 -253 2364 90 0 0 chr11 29066389 29066689 -119716783 - AluY SINE Alu -11 300 1 909 199 157 51 chr11 29066689 29066897 -119716575 + MSTD LTR MaLR 143 396 0 9694 217 38 36 chr11 29066897 29070766 -119712706 + L1MC1 LINE L1 1498 5458 -968 3705 170 41 31 chr11 29070868 29071226 -119712246 + L1MC1 LINE L1 5816 6169 -444 282 29 0 0 chr11 29071226 29071261 -119712211 + (TG)n Simple_repeat Simple_repeat 2 36 0 3705 170 41 31 chr11 29071261 29071686 -119711786 + L1MC1 LINE L1 6169 6607 -6 6426 70 17 0 chr11 29071686 29072979 -119710493 + L1PA8A LINE L1 4821 6128 -3 196 196 65 0 chr11 29073062 29073108 -119710364 + L2 LINE L2 3220 3268 -4 1036 163 51 23 chr11 29073395 29073610 -119709862 - Tigger1 DNA MER2_type 0 2418 2198 567 139 0 0 chr11 29073610 29073689 -119709783 + FRAM SINE Alu 59 137 -39 728 304 91 17 chr11 29074133 29074662 -119708810 + L1ME4a LINE L1 5548 6115 -6 2169 213 24 28 chr11 29075308 29075852 -119707620 + MLT1F LTR MaLR 1 542 0 487 235 67 45 chr11 29075988 29076167 -119707305 + MIR SINE MIR 48 230 -32 493 206 0 0 chr11 29077182 29077274 -119706198 - MLT2F LTR ERVL -99 564 473 1227 218 108 25 chr11 29077274 29077627 -119705845 + MER31B LTR ERV1 1 382 -84 962 288 56 21 chr11 29077665 29078002 -119705470 - L2 LINE L2 -34 3279 2931 216 264 0 0 chr11 29078052 29078105 -119705367 - MIR SINE MIR -34 228 176 391 254 5 103 chr11 29078105 29078210 -119705262 - L1MC/D LINE L1 -440 5681 5651 2386 97 3 0 chr11 29078210 29078520 -119704952 - AluSp SINE Alu -2 311 1 391 254 5 103 chr11 29078520 29078637 -119704835 - L1MC/D LINE L1 -470 5651 5524 358 330 41 4 chr11 29078865 29079042 -119704430 + MIR SINE MIR 22 212 -50 1063 42 91 0 chr11 29079110 29079253 -119704219 - L1PA11 LINE L1 0 6174 6019 891 141 20 0 chr11 29079354 29079503 -119703969 + LTR12 LTR ERV1 335 486 -228 255 333 69 23 chr11 29079517 29079691 -119703781 + MLT1K LTR MaLR 375 556 -32 367 294 65 7 chr11 29079910 29080063 -119703409 + MIR SINE MIR 67 228 -34 366 206 41 41 chr11 29082454 29082551 -119700921 - MIR SINE MIR 0 262 166 1074 236 54 3 chr11 29082717 29083030 -119700442 - L1ME3 LINE L1 -70 6092 5764 254 340 41 0 chr11 29083031 29083128 -119700344 + L2 LINE L2 2590 2690 -624 1052 132 72 157 chr11 29083444 29083762 -119699710 - MSTA LTR MaLR 0 428 138 612 286 103 17 chr11 29084297 29084531 -119698941 + MIR SINE MIR 9 262 0 2067 137 0 0 chr11 29085935 29086228 -119697244 - AluSc SINE Alu -16 293 1 530 165 103 0 chr11 29086352 29086449 -119697023 - FLAM_A SINE Alu -32 110 4 431 241 60 9 chr11 29086462 29086578 -119696894 + L2 LINE L2 3192 3313 0 371 270 113 26 chr11 29087854 29087969 -119695503 + L2 LINE L2 3189 3313 0 356 260 10 10 chr11 29088793 29088889 -119694583 + L2 LINE L2 3170 3265 -7 180 298 0 0 chr11 29089013 29089060 -119694412 + MIR SINE MIR 209 255 -7 212 163 0 47 chr11 29089207 29089250 -119694222 + (TAA)n Simple_repeat Simple_repeat 2 42 0 266 310 62 9 chr11 29089257 29089370 -119694102 - MIR SINE MIR -15 247 129 195 184 0 0 chr11 29089915 29089953 -119693519 + (TG)n Simple_repeat Simple_repeat 2 39 0 1264 201 21 0 chr11 29091419 29091658 -119691814 + MLT1E LTR MaLR 350 593 0 423 262 28 28 chr11 29091658 29091765 -119691707 + MIR SINE MIR 154 260 -2 186 200 25 0 chr11 29091800 29091840 -119691632 - L2 LINE L2 -2 3311 3271 463 332 73 23 chr11 29091940 29092068 -119691404 - L2 LINE L2 -175 3097 2952 1062 199 0 9 chr11 29092068 29092279 -119691193 + MER3 DNA MER1_type 1 209 0 463 332 73 23 chr11 29092279 29092370 -119691102 - L2 LINE L2 -320 2952 2867 562 286 62 35 chr11 29092412 29092639 -119690833 - MIR SINE MIR 0 262 30 362 260 77 10 chr11 29094014 29094118 -119689354 + MER5B DNA MER1_type 8 118 -60 463 37 61 0 chr11 29094685 29094767 -119688705 + CT-rich Low_complexity Low_complexity 2 88 0 475 225 14 7 chr11 29094836 29094974 -119688498 - MLT1H LTR MaLR -388 161 23 229 310 93 8 chr11 29096182 29096311 -119687161 - MIR SINE MIR -71 191 52 250 382 35 20 chr11 29097261 29097460 -119686012 - L3 LINE CR1 -54 1523 1322 479 299 13 7 chr11 29097477 29097631 -119685841 - MIR SINE MIR 0 262 108 462 96 0 0 chr11 29097659 29097732 -119685740 + (TTCC)n Simple_repeat Simple_repeat 3 75 0 1694 94 0 0 chr11 29097834 29098046 -119685426 - AluSq SINE Alu -101 212 1 814 124 44 0 chr11 29098046 29098159 -119685313 - AluSq/x SINE Alu -176 136 19 22 0 0 0 chr11 29098250 29098272 -119685200 + AT_rich Low_complexity Low_complexity 1 22 0 361 65 0 0 chr11 29098671 29098717 -119684755 + (TG)n Simple_repeat Simple_repeat 1 46 0 243 111 0 0 chr11 29098722 29098758 -119684714 - L1MB1 LINE L1 -13 6155 6120 2009 117 10 13 chr11 29098772 29099080 -119684392 - AluSc SINE Alu -2 307 1 3734 132 18 66 chr11 29099080 29099849 -119683623 - L1MB1 LINE L1 -59 6130 5395 377 304 7 44 chr11 29099886 29100021 -119683451 - MER5A DNA MER1_type -43 146 17 193 301 87 29 chr11 29100935 29101038 -119682434 + MER5B DNA MER1_type 2 110 -68 245 246 0 18 chr11 29100956 29101013 -119682459 - MER5A DNA MER1_type -25 164 109 242 365 28 47 chr11 29101192 29101403 -119682069 + L2 LINE L2 2895 3101 -212 7110 227 25 39 chr11 29101517 29104477 -119678995 - L1P3 LINE L1 -3528 2933 9 188 271 57 29 chr11 29104773 29104843 -119678629 - L2 LINE L2 -1 3312 3241 284 349 8 31 chr11 29106646 29106775 -119676697 - L2 LINE L2 -201 3071 2946 384 224 43 9 chr11 29106923 29107039 -119676433 + MER53 DNA DNA 1 120 -69 305 333 0 0 chr11 29107039 29107129 -119676343 + L1MC4 LINE L1 6614 6703 -1339 585 323 32 42 chr11 29107504 29107618 -119675854 + ERVL LTR ERVL 4782 4896 -868 600 215 138 36 chr11 29107618 29107813 -119675659 + MER58C DNA MER1_type 1 215 0 585 323 32 42 chr11 29107813 29108008 -119675464 + ERVL LTR ERVL 4896 5088 -676 597 270 108 67 chr11 29108385 29108819 -119674653 + LTR16A1 LTR ERVL 2 453 -4 1152 309 55 23 chr11 29108828 29109303 -119674169 + L2 LINE L2 2804 3293 -20 558 0 0 0 chr11 29109518 29109580 -119673892 + (TA)n Simple_repeat Simple_repeat 1 62 0 252 196 0 18 chr11 29109596 29109652 -119673820 - MLT1J2 LTR MaLR -18 432 378 2457 219 27 19 chr11 29109836 29111164 -119672308 + L1PA15-16 LINE L1 1934 3447 -3402 353 221 93 43 chr11 29112562 29112702 -119670770 + MLT1H LTR MaLR 403 549 0 581 280 40 44 chr11 29113638 29113888 -119669584 - MIR SINE MIR -1 261 13 18170 159 46 18 chr11 29114214 29121704 -119661768 + L1MA1 LINE L1 16 7717 -4 287 321 88 22 chr11 29122679 29122816 -119660656 - MIR SINE MIR 0 262 117 715 305 87 47 chr11 29123188 29123591 -119659881 + LTR16C LTR ERVL 70 488 -3 289 273 192 6 chr11 29123629 29123801 -119659671 - L2 LINE L2 -504 2810 2607 466 322 106 42 chr11 29123886 29124358 -119659114 - LTR33 LTR ERVL -8 513 12 189 0 0 0 chr11 29124541 29124562 -119658910 + (GGAA)n Simple_repeat Simple_repeat 1 21 0 286 276 45 21 chr11 29125076 29125193 -119658279 + MIR SINE MIR 3 122 -94 246 359 129 6 chr11 29125390 29125560 -119657912 + MIR SINE MIR 17 207 -55 200 228 0 35 chr11 29125634 29125691 -119657781 + CT-rich Low_complexity Low_complexity 6 60 0 591 235 140 17 chr11 29125740 29125919 -119657553 - MIR SINE MIR -34 228 28 181 73 24 49 chr11 29126743 29126784 -119656688 + (TTCC)n Simple_repeat Simple_repeat 3 42 0 1110 204 15 5 chr11 29126810 29127016 -119656456 + AluJb SINE Alu 87 294 -18 350 240 188 0 chr11 29127595 29127691 -119655781 + L2 LINE L2 3159 3272 0 240 257 14 29 chr11 29128799 29128869 -119654603 + CT-rich Low_complexity Low_complexity 4 72 0 1291 119 38 17 chr11 29129336 29129571 -119653901 - L1P4 LINE L1 -552 5609 5370 190 227 45 0 chr11 29129959 29130047 -119653425 + (CATATA)n Simple_repeat Simple_repeat 5 96 0 206 206 29 15 chr11 29130097 29130165 -119653307 + (CATATA)n Simple_repeat Simple_repeat 4 72 0 520 243 105 52 chr11 29131051 29131261 -119652211 - MIR SINE MIR -27 235 15 23 0 0 0 chr11 29131917 29131940 -119651532 + AT_rich Low_complexity Low_complexity 1 23 0 180 111 0 0 chr11 29132127 29132154 -119651318 + (T)n Simple_repeat Simple_repeat 1 27 0 274 304 116 7 chr11 29132455 29132593 -119650879 + L2 LINE L2 2222 2374 -940 7062 30 8 0 chr11 29132600 29133474 -119649998 - L1PA3 LINE L1 0 6155 5275 34129 49 2 4 chr11 29133474 29137927 -119645545 - L1PA3 LINE L1 -1701 4445 3 334 273 63 49 chr11 29137953 29138040 -119645432 + L2 LINE L2 2394 2485 -829 1813 154 3 39 chr11 29138040 29138404 -119645068 - L1PA14 LINE L1 0 6161 5811 334 273 63 49 chr11 29138404 29138459 -119645013 + L2 LINE L2 2485 2538 -776 408 238 0 0 chr11 29138558 29138663 -119644809 + (TATATG)n Simple_repeat Simple_repeat 1 105 0 619 243 33 0 chr11 29139004 29139156 -119644316 + MER63A DNA MER1_type 53 209 -1 185 116 0 47 chr11 29139414 29139457 -119644015 + (TTG)n Simple_repeat Simple_repeat 2 42 0 573 258 63 0 chr11 29139885 29140044 -119643428 + MER58B DNA MER1_type 173 341 0 1844 215 43 53 chr11 29140055 29140748 -119642724 - Charlie1a DNA MER1_type -3 1452 767 1274 236 78 17 chr11 29140750 29141094 -119642378 - MLT1A1 LTR MaLR 0 365 1 2756 257 82 4 chr11 29141115 29142147 -119641325 + L1MC2 LINE L1 3089 4201 -1945 410 216 0 23 chr11 29142172 29142348 -119641124 + (TA)n Simple_repeat Simple_repeat 1 172 0 984 253 32 42 chr11 29142348 29142851 -119640621 + L1MC2 LINE L1 4205 4702 -1444 12517 26 5 0 chr11 29142851 29144409 -119639063 - L1PA3 LINE L1 -883 5263 3698 7451 32 3 3 chr11 29144409 29145307 -119638165 + L1PA3 LINE L1 5254 6155 0 300 265 45 8 chr11 29145307 29145439 -119638033 + L1MC2 LINE L1 4693 4829 -1317 4203 189 58 19 chr11 29145447 29146831 -119636641 + L1MC2 LINE L1 4907 6338 -6 2597 215 43 38 chr11 29146831 29147575 -119635897 - Charlie1a DNA MER1_type -707 748 1 27 29 0 0 chr11 29147591 29147625 -119635847 + AT_rich Low_complexity Low_complexity 1 34 0 526 275 110 0 chr11 29148269 29148451 -119635021 + L2 LINE L2 3112 3313 0 259 369 10 0 chr11 29148629 29148732 -119634740 - MIR3 SINE MIR -51 157 54 342 267 32 72 chr11 29150114 29150303 -119633169 + MIR SINE MIR 3 183 -61 483 248 14 43 chr11 29150601 29150742 -119632730 - MIR SINE MIR -2 260 124 727 173 0 43 chr11 29152067 29152206 -119631266 - AluJb SINE Alu -16 296 164 437 333 67 13 chr11 29152249 29152474 -119630998 + MLT1K LTR MaLR 317 553 -35 969 198 50 0 chr11 29152489 29152691 -119630781 + MER20 DNA MER1_type 4 215 -4 312 120 0 0 chr11 29153543 29153593 -119629879 + (TG)n Simple_repeat Simple_repeat 1 50 0 401 297 80 0 chr11 29153968 29154106 -119629366 - MIR SINE MIR -110 152 4 2452 103 3 0 chr11 29154190 29154502 -119628970 - AluSp SINE Alu 0 313 1 1476 261 89 12 chr11 29154701 29155118 -119628354 - MLT1F1 LTR MaLR 0 567 119 754 227 0 0 chr11 29155121 29155253 -119628219 - FLAM_A SINE Alu -10 132 1 679 208 0 0 chr11 29155253 29155383 -119628089 - MLT1F1 LTR MaLR -433 134 5 320 339 116 20 chr11 29157455 29157756 -119625716 + L2 LINE L2 2982 3311 -2 198 0 0 0 chr11 29158778 29158800 -119624672 + (A)n Simple_repeat Simple_repeat 1 22 0 343 316 26 57 chr11 29158806 29159055 -119624417 + MIR SINE MIR 5 242 -20 207 258 0 32 chr11 29159084 29159146 -119624326 - MIR SINE MIR 0 262 203 256 282 141 66 chr11 29159228 29159469 -119624003 + MLT1J LTR MaLR 101 359 -152 232 310 14 0 chr11 29160001 29160072 -119623400 + MIR3 SINE MIR 130 201 -7 41242 48 3 2 chr11 29160569 29166719 -119616753 + L1PA4 LINE L1 3 6155 0 1357 183 59 83 chr11 29167186 29167629 -119615843 - MSTB1 LTR MaLR 0 432 1 403 348 66 49 chr11 29168711 29169119 -119614353 - L2 LINE L2 -4 3309 2895 193 301 87 29 chr11 29169273 29169376 -119614096 - MER5B DNA MER1_type -68 110 2 245 246 0 18 chr11 29169298 29169355 -119614117 + MER5A DNA MER1_type 109 164 -25 1436 231 81 14 chr11 29170103 29170536 -119612936 - MLT1C LTR MaLR 0 467 6 2303 143 20 3 chr11 29170618 29170976 -119612496 + THE1B LTR MaLR 1 364 0 1567 188 95 25 chr11 29173806 29174237 -119609235 + MLT1C LTR MaLR 6 466 -1 220 382 26 0 chr11 29174243 29174319 -119609153 - L2 LINE L2 -32 3281 3204 1563 85 0 10 chr11 29174620 29174821 -119608651 - AluY SINE Alu -112 199 1 1518 226 87 24 chr11 29174827 29175242 -119608230 + MLT1D LTR MaLR 65 505 0 270 279 73 0 chr11 29175254 29175322 -119608150 - MIR SINE MIR -178 84 12 6517 200 151 16 chr11 29175364 29176910 -119606562 + MER52A LTR ERV1 1 1755 0 249 317 93 65 chr11 29176927 29177173 -119606299 + MIR SINE MIR 10 262 0 513 246 31 47 chr11 29177407 29177598 -119605874 + LTR33A LTR ERVL 1 188 -335 270 332 49 40 chr11 29177658 29177884 -119605588 + LTR33A LTR ERVL 289 516 -7 197 277 0 0 chr11 29178334 29178381 -119605091 + L2 LINE L2 3193 3239 -33 184 306 0 0 chr11 29178476 29178525 -119604947 - L3 LINE CR1 -1 1576 1528 275 318 62 54 chr11 29179449 29179578 -119603894 + MIR SINE MIR 21 150 -58 294 173 0 0 chr11 29179923 29179975 -119603497 - L2 LINE L2 -1 3312 3261 476 298 66 17 chr11 29180342 29180523 -119602949 - MIR SINE MIR 0 262 73 323 324 182 35 chr11 29181473 29181643 -119601829 - MER91A DNA MER1_type -1 195 1 589 314 30 30 chr11 29182632 29182847 -119600625 + MIR SINE MIR 27 243 -19 673 336 52 0 chr11 29184064 29184335 -119599137 + LTR33 LTR ERVL 12 296 -225 306 348 45 0 chr11 29184508 29184620 -119598852 - MIR SINE MIR -128 134 18 560 263 86 11 chr11 29184695 29184870 -119598602 + MIR SINE MIR 5 192 -70 920 261 27 37 chr11 29184876 29185244 -119598228 + MLT1A1 LTR MaLR 1 365 0 438 287 120 12 chr11 29185363 29185530 -119597942 - L2 LINE L2 -736 2578 2394 431 370 37 0 chr11 29185529 29185691 -119597781 - MIR SINE MIR -72 190 23 * 379 361 13 13 chr11 29185836 29185994 -119597478 - MIR3 SINE MIR -21 187 30 206 339 17 0 chr11 29186452 29186511 -119596961 - L2 LINE L2 -9 3263 3204 270 375 84 21 chr11 29186743 29186980 -119596492 - L2 LINE L2 -341 2973 2722 270 290 116 7 chr11 29187043 29187181 -119596291 - MLT1I LTR MaLR -14 395 243 2092 126 0 0 chr11 29187403 29187689 -119595783 - AluSx SINE Alu -26 286 1 336 102 0 0 chr11 29187731 29187780 -119595692 + (TG)n Simple_repeat Simple_repeat 2 50 0 5025 14 0 0 chr11 29188198 29188768 -119594704 + L1PA3 LINE L1 5586 6155 0 234 317 57 41 chr11 29189321 29189444 -119594028 - L2 LINE L2 0 3313 3189 226 286 188 18 chr11 29189457 29189569 -119593903 - L2 LINE L2 -1 3312 3182 515 316 24 53 chr11 29189983 29190189 -119593283 - MIR SINE MIR 0 262 63 233 157 0 39 chr11 29190796 29190847 -119592625 + CT-rich Low_complexity Low_complexity 6 54 0 21 0 0 0 chr11 29190866 29190887 -119592585 + AT_rich Low_complexity Low_complexity 1 21 0 270 0 0 0 chr11 29191243 29191273 -119592199 + (T)n Simple_repeat Simple_repeat 1 30 0 23 33 0 0 chr11 29191539 29191569 -119591903 + AT_rich Low_complexity Low_complexity 1 30 0 2304 97 0 31 chr11 29192412 29192753 -119590719 + AluY SINE Alu 1 331 0 432 337 49 6 chr11 29192753 29192916 -119590556 + MIR SINE MIR 20 189 -73 782 215 25 12 chr11 29193494 29193657 -119589815 + MER90 LTR ERV1 4 168 -446 461 185 59 92 chr11 29193672 29193791 -119589681 + AluJo SINE Alu 105 219 -93 186 43 0 0 chr11 29193816 29193839 -119589633 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1691 209 34 75 chr11 29193841 29194058 -119589414 + MER90 LTR ERV1 192 416 -198 2057 92 0 0 chr11 29194058 29194320 -119589152 + AluSq SINE Alu 42 303 -10 1691 209 34 75 chr11 29194320 29194485 -119588987 + MER90 LTR ERV1 416 556 -58 423 0 0 0 chr11 29194485 29194532 -119588940 + (TA)n Simple_repeat Simple_repeat 2 48 0 1691 209 34 75 chr11 29194532 29194589 -119588883 + MER90 LTR ERV1 556 614 0 1970 117 94 26 chr11 29195178 29195519 -119587953 + THE1B LTR MaLR 1 364 0 2408 100 0 0 chr11 29195895 29196205 -119587267 - AluSg SINE Alu 0 310 1 382 289 75 6 chr11 29196303 29196462 -119587010 + MIR SINE MIR 52 221 -41 1603 251 50 7 chr11 29196690 29197133 -119586339 - MLT1C LTR MaLR 0 467 6 355 396 114 0 chr11 29197703 29197905 -119585567 - MER115 DNA AcHobo -319 374 150 637 202 50 0 chr11 29198226 29198345 -119585127 + FLAM_A SINE Alu 1 125 -8 27 96 0 0 chr11 29199652 29199735 -119583737 + AT_rich Low_complexity Low_complexity 1 83 0 1587 155 126 32 chr11 29200125 29200466 -119583006 + THE1C LTR MaLR 3 375 0 6085 195 19 6 chr11 29200558 29201742 -119581730 - L1PA15 LINE L1 -1 6164 4937 2046 148 0 3 chr11 29201742 29201872 -119581600 + AluSq SINE Alu 1 130 -183 189 0 0 0 chr11 29201872 29201893 -119581579 + (TA)n Simple_repeat Simple_repeat 1 21 0 2046 148 0 3 chr11 29201893 29202072 -119581400 + AluSq SINE Alu 130 309 -4 6085 195 19 6 chr11 29202072 29203148 -119580324 - L1PA15 LINE L1 -1228 4937 3877 5231 234 45 6 chr11 29203151 29204561 -119578911 + L1PA15 LINE L1 2414 3878 -2268 360 333 104 0 chr11 29204958 29205102 -119578370 + MIR SINE MIR 100 258 -4 2879 13 0 0 chr11 29205331 29205649 -119577823 - AluYb8 SINE Alu 0 318 1 341 192 25 0 chr11 29205683 29205771 -119577701 - MLT1A1 LTR MaLR 0 396 277 857 172 91 122 chr11 29206647 29206967 -119576505 - MLT1A1 LTR MaLR -55 310 1 1003 150 77 21 chr11 29207310 29207502 -119575970 + THE1C LTR MaLR 1 219 -209 1071 117 0 0 chr11 29207502 29207682 -119575790 + (TC)n Simple_repeat Simple_repeat 1 180 0 1003 150 77 21 chr11 29207682 29207735 -119575737 + THE1C LTR MaLR 219 268 -160 381 158 0 0 chr11 29207735 29207817 -119575655 + CT-rich Low_complexity Low_complexity 2 83 0 986 130 45 39 chr11 29207817 29208016 -119575456 + THE1C LTR MaLR 199 375 0 253 290 62 80 chr11 29208078 29208254 -119575218 - MIR SINE MIR -26 236 64 4981 243 64 73 chr11 29208304 29210693 -119572779 + L1MA7 LINE L1 33 2209 -4174 1322 164 9 0 chr11 29210703 29210922 -119572550 + 7SLRNA srpRNA srpRNA 8 228 -92 11453 201 70 30 chr11 29210992 29211985 -119571487 + L1MA7 LINE L1 2121 3073 -3454 1706 162 3 40 chr11 29211985 29212282 -119571190 + AluJo SINE Alu 1 286 -26 11453 201 70 30 chr11 29212282 29213988 -119569484 + L1MA7 LINE L1 3073 4710 -1817 1840 115 140 19 chr11 29213988 29214310 -119569162 + THE1B LTR MaLR 4 364 0 11630 95 10 1 chr11 29214310 29215874 -119567598 + THE1B-int LTR MaLR 1 1579 -1 1817 139 118 21 chr11 29215875 29216207 -119567265 + THE1B LTR MaLR 1 364 0 11453 201 70 30 chr11 29216207 29217703 -119565769 + L1MA7 LINE L1 4709 6503 -24 26 0 0 0 chr11 29217713 29217739 -119565733 + AT_rich Low_complexity Low_complexity 1 26 0 307 274 14 0 chr11 29218043 29218116 -119565356 - MER41D LTR ERV1 -88 469 396 7197 114 139 92 chr11 29218305 29219927 -119563545 - pTR5 LTR ERV1 0 2438 742 2015 176 30 18 chr11 29221122 29221520 -119561952 - MER57A LTR ERV1 0 403 1 238 305 25 25 chr11 29221587 29221705 -119561767 - LTR67 LTR ERVL -6 551 434 222 233 192 14 chr11 29222034 29222107 -119561365 + MIR SINE MIR 156 241 -21 * 307 339 45 0 chr11 29222105 29222217 -119561255 + L2 LINE L2 3186 3302 -11 378 289 87 18 chr11 29223000 29223180 -119560292 + MIR SINE MIR 27 220 -42 196 360 29 69 chr11 29223291 29223466 -119560006 + MIR SINE MIR 40 207 -55 238 333 145 0 chr11 29223521 29223638 -119559834 - MIR SINE MIR -12 250 117 1544 233 60 35 chr11 29223660 29224111 -119559361 - MLT1C LTR MaLR -5 462 1 184 396 0 22 chr11 29224181 29224272 -119559200 - MIR SINE MIR -100 108 20 420 337 17 35 chr11 29224433 29224605 -119558867 + MLT1K LTR MaLR 82 250 -338 1045 157 52 4 chr11 29224827 29225057 -119558415 - L1MA4 LINE L1 -6 6294 6054 5477 98 5 19 chr11 29225059 29225858 -119557614 + HERVH LTR ERV1 4233 5020 -2693 2535 105 46 30 chr11 29225841 29226279 -119557193 + HERVH LTR ERV1 7269 7713 0 * 1813 102 21 9 chr11 29226279 29226634 -119556838 + LTR7 LTR ERV1 1 412 -38 453 246 0 0 chr11 29226861 29226961 -119556511 - MLT2C2 LTR ERVL -40 424 258 7130 72 167 1 chr11 29226979 29228027 -119555445 - MER11B LTR ERVK -14 1222 1 1371 181 35 0 chr11 29228027 29228280 -119555192 - MLT2C2 LTR ERVL -202 262 1 642 338 20 10 chr11 29228316 29228520 -119554952 - L2 LINE L2 -262 3051 2846 442 294 0 37 chr11 29228660 29228796 -119554676 + L2 LINE L2 3182 3312 -1 2190 233 99 31 chr11 29229510 29230503 -119552969 + MER63D DNA MER1_type 2 1061 0 524 72 0 0 chr11 29231879 29231948 -119551524 + MER57A LTR ERV1 8 76 -327 2136 191 5 0 chr11 29231948 29232326 -119551146 + MER57A LTR ERV1 24 403 0 874 166 30 24 chr11 29232707 29232876 -119550596 - MER93b LTR ERV1 0 373 204 3167 187 42 24 chr11 29232925 29233968 -119549504 + L1PB1 LINE L1 995 2018 -4849 459 143 0 0 chr11 29233968 29234045 -119549427 + MADE1 DNA Mariner 1 77 -3 3167 187 42 24 chr11 29234045 29236821 -119546651 + L1PB1 LINE L1 2018 4744 -2123 261 0 0 0 chr11 29236821 29236850 -119546622 + (TAAAA)n Simple_repeat Simple_repeat 4 32 0 3167 187 42 24 chr11 29236850 29238165 -119545307 + L1PB1 LINE L1 4744 6517 -350 303 28 0 0 chr11 29238165 29238201 -119545271 + (CA)n Simple_repeat Simple_repeat 2 37 0 3167 187 42 24 chr11 29238201 29238554 -119544918 + L1PB1 LINE L1 6517 6862 -5 1038 178 18 32 chr11 29238555 29238774 -119544698 - MER93b LTR ERV1 -157 216 1 1758 186 3 0 chr11 29238954 29239245 -119544227 + AluJb SINE Alu 5 296 -16 424 331 63 56 chr11 29239586 29239793 -119543679 + MLT1J LTR MaLR 131 342 -169 1904 160 3 40 chr11 29239793 29240143 -119543329 - MER1B DNA MER1_type 0 337 1 424 331 63 56 chr11 29240143 29240222 -119543250 + MLT1J LTR MaLR 342 419 -92 605 245 82 33 chr11 29240280 29240464 -119543008 - MIR SINE MIR -65 197 5 203 298 212 58 chr11 29242029 29242355 -119541117 - L2 LINE L2 0 3313 2938 288 244 47 47 chr11 29243188 29243360 -119540112 - Charlie7 DNA MER1_type -1 2611 2440 315 192 0 0 chr11 29243519 29243592 -119539880 + CT-rich Low_complexity Low_complexity 6 78 0 181 344 16 0 chr11 29244605 29244666 -119538806 - L2 LINE L2 -758 2556 2495 595 342 30 19 chr11 29245565 29245805 -119537667 + MIR SINE MIR 3 242 -20 396 0 0 0 chr11 29247615 29247659 -119535813 + (CA)n Simple_repeat Simple_repeat 2 45 0 2292 136 3 9 chr11 29247888 29248227 -119535245 + MER1B DNA MER1_type 1 337 0 1319 204 93 41 chr11 29248237 29248699 -119534773 - Charlie4a DNA MER1_type 0 508 23 359 338 54 27 chr11 29248786 29249008 -119534464 + MIR SINE MIR 1 228 -34 429 278 8 60 chr11 29250303 29250436 -119533036 - L2 LINE L2 0 3272 3147 24 67 0 0 chr11 29250539 29250584 -119532888 + AT_rich Low_complexity Low_complexity 1 45 0 332 311 48 0 chr11 29251347 29251450 -119532022 + MIR3 SINE MIR 70 177 -31 1317 236 68 95 chr11 29251689 29252249 -119531223 - MLT2E LTR ERVL -15 613 69 272 331 66 33 chr11 29252837 29253018 -119530454 - MIR SINE MIR -56 206 20 411 363 75 30 chr11 29253744 29254212 -119529260 + HERV16 LTR ERVL 4796 5284 -370 481 300 30 0 chr11 29254216 29254416 -119529056 + HERV16 LTR ERVL 4789 4994 -2 1121 290 74 15 chr11 29254471 29254874 -119528598 + LTR16B LTR ERVL 38 464 0 216 0 0 0 chr11 29255658 29255682 -119527790 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr11 29256742 29256763 -119526709 + AT_rich Low_complexity Low_complexity 1 21 0 186 236 382 11 chr11 29256785 29256874 -119526598 + L2 LINE L2 3151 3272 0 405 144 56 0 chr11 29258106 29258196 -119525276 - L1MB7 LINE L1 -7 6177 6083 294 183 0 0 chr11 29258233 29258293 -119525179 - L1MA6 LINE L1 0 6300 6241 222 37 0 0 chr11 29258299 29258326 -119525146 + (TG)n Simple_repeat Simple_repeat 2 28 0 1373 199 11 53 chr11 29258326 29258608 -119524864 - AluJo SINE Alu -42 270 1 600 220 0 0 chr11 29258608 29258726 -119524746 - L1MA5 LINE L1 -46 6254 6137 2125 172 3 3 chr11 29258967 29259333 -119524139 - MER47A DNA MER2_type 0 366 1 32 0 0 0 chr11 29260170 29260202 -119523270 + AT_rich Low_complexity Low_complexity 1 32 0 330 302 70 50 chr11 29260306 29260606 -119522866 + MLT1J1 LTR MaLR 101 417 -2 34 42 0 0 chr11 29262198 29262246 -119521226 + AT_rich Low_complexity Low_complexity 1 48 0 910 216 81 24 chr11 29262270 29262603 -119520869 - L1MC5 LINE L1 -312 7649 7298 189 0 0 0 chr11 29262610 29262631 -119520841 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 24813 64 6 4 chr11 29263577 29267691 -119515781 - L1PA6 LINE L1 0 6154 2031 6803 60 13 9 chr11 29267691 29269126 -119514346 - L1PA6 LINE L1 -14 6140 4700 953 240 147 57 chr11 29269928 29270437 -119513035 - MLT1H1 LTR MaLR 0 555 1 368 212 27 58 chr11 29270815 29271048 -119512424 + Charlie7 DNA MER1_type 39 2612 0 201 330 21 21 chr11 29271701 29271798 -119511674 + MIR3 SINE MIR 82 178 -30 1005 310 46 33 chr11 29272252 29272710 -119510762 - LTR16B LTR ERVL 0 464 1 2119 117 7 7 chr11 29272862 29273162 -119510310 + AluSx SINE Alu 1 300 -12 409 331 26 19 chr11 29273178 29273332 -119510140 - MIR SINE MIR -40 222 68 197 275 0 0 chr11 29273770 29273810 -119509662 + L2 LINE L2 3147 3186 -86 818 270 44 24 chr11 29273908 29274165 -119509307 - MIR SINE MIR 0 262 4 736 220 40 0 chr11 29274689 29274839 -119508633 + MER58B DNA MER1_type 179 334 -7 536 340 42 5 chr11 29274856 29275071 -119508401 + MIR SINE MIR 29 251 -11 2687 131 19 2 chr11 29275842 29276263 -119507209 + MSTA LTR MaLR 1 428 0 325 313 208 5 chr11 29276263 29276455 -119507017 - MIR SINE MIR -8 254 24 198 400 40 32 chr11 29277291 29277416 -119506056 - L2 LINE L2 -36 3236 3111 260 381 142 0 chr11 29277595 29277792 -119505680 + L3 LINE CR1 1352 1576 -1 21 36 0 0 chr11 29277831 29277859 -119505613 + AT_rich Low_complexity Low_complexity 1 28 0 269 235 174 68 chr11 29278226 29278358 -119505114 - MLT1H LTR MaLR -8 541 396 573 300 57 32 chr11 29278412 29278695 -119504777 - MLT1H LTR MaLR -259 290 1 277 265 40 99 chr11 29280647 29280798 -119502674 - MIR SINE MIR -26 236 95 * 372 276 51 0 chr11 29280780 29280878 -119502594 + L2 LINE L2 3208 3310 -3 25 0 0 0 chr11 29281402 29281427 -119502045 + AT_rich Low_complexity Low_complexity 1 25 0 1942 193 25 6 chr11 29281501 29281859 -119501613 - MLT1A1 LTR MaLR 0 365 1 11683 26 0 0 chr11 29282197 29284342 -119499130 - L1PA3 LINE L1 0 6155 4014 210 139 0 0 chr11 29284694 29284730 -119498742 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 495 238 43 55 chr11 29284932 29285096 -119498376 - MIR SINE MIR -70 192 31 2500 68 0 0 chr11 29285885 29286192 -119497280 + AluY SINE Alu 1 307 -4 284 309 60 23 chr11 29286193 29286343 -119497129 + MIR SINE MIR 37 191 -64 321 296 91 55 chr11 29286372 29286571 -119496901 - MIR SINE MIR -9 253 48 185 191 221 0 chr11 29286663 29286731 -119496741 - MIR SINE MIR -14 248 166 61 52 0 0 chr11 29286776 29286872 -119496600 + AT_rich Low_complexity Low_complexity 1 96 0 1638 203 10 0 chr11 29286872 29287162 -119496310 - AluJb SINE Alu -19 293 1 3836 153 13 19 chr11 29287535 29287894 -119495578 - L1PB3 LINE L1 -4 6150 5790 957 42 0 0 chr11 29287894 29288012 -119495460 + (TA)n Simple_repeat Simple_repeat 1 118 0 3836 153 13 19 chr11 29288012 29288068 -119495404 - L1PB3 LINE L1 -364 5790 5735 2378 96 0 0 chr11 29288068 29288370 -119495102 - AluSp SINE Alu -11 302 1 3836 153 13 19 chr11 29288370 29288645 -119494827 - L1PB3 LINE L1 -419 5735 5463 292 301 26 26 chr11 29288956 29289069 -119494403 - L2 LINE L2 0 3272 3160 181 265 0 29 chr11 29290179 29290247 -119493225 - MIR SINE MIR -66 196 131 241 336 134 22 chr11 29290356 29290490 -119492982 + L2 LINE L2 3116 3264 -8 215 224 0 0 chr11 29290673 29290722 -119492750 + (TTCA)n Simple_repeat Simple_repeat 4 52 0 231 133 0 0 chr11 29291851 29291896 -119491576 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 1957 124 10 33 chr11 29292597 29292896 -119490576 + AluSq SINE Alu 1 292 -21 681 336 154 0 chr11 29293231 29293582 -119489890 + LTR16C LTR ERVL 74 478 -13 753 333 16 0 chr11 29293669 29293912 -119489560 - MIR SINE MIR 0 262 16 455 301 122 41 chr11 29295500 29296117 -119487355 + L2 LINE L2 2630 3311 -2 267 265 15 0 chr11 29296118 29296186 -119487286 + GA-rich Low_complexity Low_complexity 1 69 0 195 139 0 0 chr11 29296436 29296472 -119487000 + (ATG)n Simple_repeat Simple_repeat 3 38 0 467 293 50 50 chr11 29296818 29296999 -119486473 + MIR SINE MIR 28 208 -54 399 298 30 66 chr11 29298029 29298227 -119485245 - MIR SINE MIR -71 191 1 347 312 173 10 chr11 29299342 29299544 -119483928 + MIR SINE MIR 14 248 -14 2163 111 0 0 chr11 29299560 29299849 -119483623 - AluSc SINE Alu -20 289 1 336 361 33 0 chr11 29301149 29301271 -119482201 - L3 LINE CR1 -22 1555 1430 277 284 160 31 chr11 29303832 29304026 -119479446 + MIR SINE MIR 28 246 -16 254 312 117 39 chr11 29304006 29304160 -119479312 - MIR SINE MIR -60 202 37 * 404 215 19 37 chr11 29304160 29304267 -119479205 + MER58B DNA MER1_type 229 333 -8 868 166 20 85 chr11 29306218 29306417 -119477055 + MER5A DNA MER1_type 3 188 -1 30 0 0 0 chr11 29306562 29306592 -119476880 + AT_rich Low_complexity Low_complexity 1 30 0 471 279 44 103 chr11 29307815 29307868 -119475604 + L1ME3A LINE L1 1220 1275 -5369 1751 175 10 3 chr11 29307868 29308165 -119475307 - AluJb SINE Alu -10 302 4 471 279 44 103 chr11 29308165 29308565 -119474907 + L1ME3A LINE L1 1275 1763 -4881 351 359 23 0 chr11 29308565 29308821 -119474651 + L1ME3A LINE L1 1661 1922 -4722 389 219 62 0 chr11 29308929 29309025 -119474447 - L1MCc LINE L1 -5201 1222 1121 979 122 48 0 chr11 29309080 29309227 -119474245 - MER57B LTR ERV1 -275 159 6 994 114 54 0 chr11 29309239 29309388 -119474084 - MER57B LTR ERV1 -277 157 1 256 272 123 0 chr11 29309398 29309479 -119473993 - L1MCc LINE L1 -5517 906 816 270 286 27 54 chr11 29309527 29309712 -119473760 - L1MCc LINE L1 -6102 321 142 520 334 31 70 chr11 29309806 29310294 -119473178 - HERVL LTR ERVL -1807 3847 3379 2526 143 7 49 chr11 29310301 29310748 -119472724 + MSTA LTR MaLR 1 428 0 347 270 135 78 chr11 29310812 29310955 -119472517 + L1ME3A LINE L1 2328 2461 -4364 371 298 72 33 chr11 29310955 29311136 -119472336 - MER5A DNA MER1_type 0 189 2 347 270 135 78 chr11 29311136 29311214 -119472258 + L1ME3A LINE L1 2461 2533 -4292 204 40 0 0 chr11 29311214 29311239 -119472233 + (TAA)n Simple_repeat Simple_repeat 2 26 0 347 270 135 78 chr11 29311239 29311335 -119472137 + L1ME3A LINE L1 2533 2664 -4161 765 282 49 44 chr11 29311438 29311704 -119471768 + L1ME3A LINE L1 2766 3029 -3615 1651 180 3 23 chr11 29311704 29312009 -119471463 + AluSx SINE Alu 5 303 -9 765 282 49 44 chr11 29312009 29312291 -119471181 + L1ME3A LINE L1 3029 3317 -3327 371 217 129 75 chr11 29312325 29312552 -119470920 - MLT1D LTR MaLR -202 265 8 1859 279 93 43 chr11 29312555 29313530 -119469942 + L1ME3A LINE L1 3719 4839 -1805 1063 200 132 71 chr11 29313530 29313895 -119469577 + MLT1B LTR MaLR 1 387 -3 1859 279 93 43 chr11 29313895 29314572 -119468900 + L1ME3A LINE L1 4839 5481 -1163 265 229 0 62 chr11 29314605 29314701 -119468771 - L1MC4 LINE L1 -1339 6703 6614 243 214 71 0 chr11 29314697 29314781 -119468691 - L1MC4 LINE L1 -1339 6703 6614 * 234 261 23 0 chr11 29314705 29314793 -119468679 + L1MC4 LINE L1 6614 6703 -1339 * 195 235 0 0 chr11 29314793 29314844 -119468628 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 498 281 80 31 chr11 29314861 29315393 -119468079 + L1ME3A LINE L1 5522 6084 -578 2332 151 54 14 chr11 29315393 29315817 -119467655 + MER65A LTR ERV1 1 441 -4 903 279 16 10 chr11 29315822 29316134 -119467338 + L1ME3A LINE L1 6081 6394 -274 808 262 18 18 chr11 29316136 29316365 -119467107 + L1ME3A LINE L1 6434 6662 -6 418 270 43 17 chr11 29316408 29316523 -119466949 - L2 LINE L2 0 3313 3196 259 281 122 0 chr11 29316691 29316773 -119466699 + LTR33 LTR ERVL 6 97 -424 293 205 45 10 chr11 29316801 29316934 -119466538 + MER58B DNA MER1_type 173 341 0 598 282 28 37 chr11 29317280 29317496 -119465976 - MIR SINE MIR -1 261 48 227 114 23 0 chr11 29318518 29318562 -119464910 + (TG)n Simple_repeat Simple_repeat 2 46 0 206 330 75 9 chr11 29320827 29320933 -119462539 + L2 LINE L2 2796 2908 -406 626 271 49 31 chr11 29321100 29321325 -119462147 - MIR SINE MIR -32 230 2 532 337 53 21 chr11 29322015 29322258 -119461214 + MIR SINE MIR 11 261 -1 468 416 64 16 chr11 29322797 29323232 -119460240 + L2 LINE L2 2817 3272 0 4789 104 1 8 chr11 29323727 29324435 -119459037 - L1PA14 LINE L1 -5 6156 5454 527 287 50 11 chr11 29324907 29325088 -119458384 + MIR SINE MIR 75 262 0 363 310 71 7 chr11 29325761 29325916 -119457556 - MIR3 SINE MIR -6 202 38 557 315 35 10 chr11 29326022 29326219 -119457253 + MIR SINE MIR 5 206 -56 466 172 0 11 chr11 29326219 29326312 -119457160 - L1MB3 LINE L1 -12 6171 6080 1390 251 43 3 chr11 29326350 29326696 -119456776 + MLT1A1 LTR MaLR 1 360 -5 470 309 100 26 chr11 29327176 29327406 -119456066 + MIR SINE MIR 5 251 -11 370 323 15 31 chr11 29327960 29328090 -119455382 + L2 LINE L2 3184 3311 -2 1931 156 8 50 chr11 29328544 29328923 -119454549 - MLT1A1 LTR MaLR -2 363 1 405 0 0 0 chr11 29329745 29329790 -119453682 + (CA)n Simple_repeat Simple_repeat 2 46 0 2211 237 74 26 chr11 29330977 29331666 -119451806 - L1ME1 LINE L1 -4 6162 5441 4060 140 38 68 chr11 29331666 29332934 -119450538 + pTR5 LTR ERV1 744 2295 -143 2387 229 90 43 chr11 29332945 29333040 -119450432 - L1ME1 LINE L1 -735 5449 5360 2247 118 3 0 chr11 29333040 29333346 -119450126 - AluSx SINE Alu -5 307 1 2387 229 90 43 chr11 29333346 29333790 -119449682 - L1ME1 LINE L1 -824 5360 4938 2329 102 0 13 chr11 29333790 29334104 -119449368 - AluSg SINE Alu 0 310 1 2387 229 90 43 chr11 29334104 29334228 -119449244 - L1ME1 LINE L1 -1246 4938 4821 2327 99 3 3 chr11 29334228 29334541 -119448931 - AluSq SINE Alu 0 313 1 2387 229 90 43 chr11 29334541 29335054 -119448418 - L1ME1 LINE L1 -1363 4821 4226 2836 127 13 16 chr11 29335082 29335531 -119447941 + MER83 LTR ERV1 1 448 0 1273 206 103 7 chr11 29335532 29335704 -119447768 + MER2 DNA MER2_type 11 165 -180 1705 108 9 4 chr11 29335704 29335935 -119447537 - AluSg SINE Alu -17 293 62 1273 206 103 7 chr11 29335935 29336054 -119447418 + MER2 DNA MER2_type 165 330 -15 291 214 107 0 chr11 29336116 29336219 -119447253 - L1ME1 LINE L1 -1929 4217 4104 300 281 119 19 chr11 29336287 29336497 -119446975 + L1M4 LINE L1 3224 3454 -2692 1013 233 33 70 chr11 29336503 29336834 -119446638 + L1M4 LINE L1 3497 3815 -2331 2679 106 0 8 chr11 29336873 29337251 -119446221 - THE1C LTR MaLR 0 375 1 330 371 13 19 chr11 29338357 29338516 -119444956 + MIR SINE MIR 3 160 -102 337 302 71 40 chr11 29338981 29339107 -119444365 + L2 LINE L2 3179 3308 -5 1850 191 16 8 chr11 29339206 29339578 -119443894 - L1PB4 LINE L1 -2 6154 5780 181 191 0 71 chr11 29340391 29340433 -119443039 - L2 LINE L2 -12 3301 3263 * 305 236 162 54 chr11 29340402 29340550 -119442922 - MIR SINE MIR -14 248 85 22 70 0 0 chr11 29340765 29340808 -119442664 + AT_rich Low_complexity Low_complexity 1 43 0 363 44 0 0 chr11 29340829 29340874 -119442598 + (ATG)n Simple_repeat Simple_repeat 2 46 0 451 247 222 26 chr11 29341090 29341284 -119442188 + MIR SINE MIR 17 248 -14 241 214 24 107 chr11 29341427 29341511 -119441961 - L2 LINE L2 -5 3267 3191 225 359 0 0 chr11 29342327 29342391 -119441081 - L2 LINE L2 0 3272 3209 311 290 40 40 chr11 29342527 29342627 -119440845 + MIR SINE MIR 33 132 -130 538 314 59 8 chr11 29343485 29343721 -119439751 - MIR SINE MIR -14 248 1 242 308 43 76 chr11 29344218 29344403 -119439069 - MIR SINE MIR -20 242 64 628 272 159 30 chr11 29344486 29344999 -119438473 + MLT1G LTR MaLR 3 590 0 1505 296 73 24 chr11 29345012 29345357 -119438115 - MLT1E LTR MaLR -2 591 208 183 42 0 0 chr11 29345357 29345381 -119438091 + (CAAG)n Simple_repeat Simple_repeat 1 24 0 1505 296 73 24 chr11 29345381 29345583 -119437889 - MLT1E LTR MaLR -385 208 17 1515 209 16 44 chr11 29345584 29345947 -119437525 - MLT1A1 LTR MaLR -12 353 1 21 0 0 0 chr11 29345960 29345981 -119437491 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 29347134 29347162 -119436310 + AT_rich Low_complexity Low_complexity 1 28 0 260 288 70 33 chr11 29347195 29347438 -119436034 + L1MC/D LINE L1 4722 4973 -1173 778 286 11 18 chr11 29347706 29347979 -119435493 + L1MC/D LINE L1 5319 5589 -2219 719 201 169 0 chr11 29349287 29349476 -119433996 - MER67D LTR ERV1 0 514 294 4259 173 40 12 chr11 29349489 29350310 -119433162 - L1PA16 LINE L1 0 6166 5323 6311 85 10 3 chr11 29350310 29351443 -119432029 - L1PA13 LINE L1 -3 6160 5016 448 315 20 51 chr11 29351565 29351819 -119431653 - L1M4 LINE L1 -1112 5034 4789 38 68 0 0 chr11 29352212 29352285 -119431187 + AT_rich Low_complexity Low_complexity 1 73 0 1375 229 18 4 chr11 29352302 29352581 -119430891 - AluJo SINE Alu -19 283 1 254 234 171 27 chr11 29354454 29354565 -119428907 - MIR SINE MIR -10 252 126 290 25 0 25 chr11 29355430 29355470 -119428002 + (TC)n Simple_repeat Simple_repeat 2 40 0 470 245 187 26 chr11 29356676 29356831 -119426641 - MER5A DNA MER1_type 0 189 10 427 296 60 40 chr11 29357079 29357278 -119426194 - MIR SINE MIR -40 222 20 182 286 36 98 chr11 29357238 29357350 -119426122 + MIR SINE MIR 41 145 -63 * 325 293 72 24 chr11 29357370 29357537 -119425935 + MER5B DNA MER1_type 1 175 -3 1977 162 0 0 chr11 29358838 29359135 -119424337 - AluJb SINE Alu -14 298 2 2385 162 36 2 chr11 29359963 29360377 -119423095 + MSTA LTR MaLR 1 428 0 9231 168 30 9 chr11 29360377 29361980 -119421492 + MSTA-int LTR MaLR 1 1636 -15 1358 168 31 12 chr11 29362012 29362268 -119421204 + MSTA LTR MaLR 3 263 -165 587 164 36 0 chr11 29362268 29362378 -119421094 - L1M3f LINE L1 -4684 644 531 1086 179 0 0 chr11 29362380 29362559 -119420913 + MSTA LTR MaLR 250 428 0 678 306 156 24 chr11 29362620 29362980 -119420492 + LTR33 LTR ERVL 10 384 -139 3547 172 11 67 chr11 29363362 29364064 -119419408 - L1M3f LINE L1 -4660 668 6 1759 180 71 45 chr11 29364230 29364652 -119418820 + Tigger2a DNA MER2_type 1 433 -1 2976 63 5 0 chr11 29364665 29365046 -119418426 + L1PA7 LINE L1 5772 6154 0 315 71 0 0 chr11 29366596 29366638 -119416834 + (TG)n Simple_repeat Simple_repeat 2 43 0 50 31 0 0 chr11 29366830 29366894 -119416578 + AT_rich Low_complexity Low_complexity 1 64 0 2386 77 3 0 chr11 29368981 29369291 -119414181 + AluY SINE Alu 1 311 0 539 291 141 60 chr11 29369646 29370192 -119413280 - MLT1E LTR MaLR -3 590 1 183 162 0 0 chr11 29370213 29370250 -119413222 + A-rich Low_complexity Low_complexity 1 37 0 214 203 0 85 chr11 29370639 29370698 -119412774 + MIR SINE MIR 208 261 -1 2091 92 7 46 chr11 29371920 29372226 -119411246 - AluSq SINE Alu -15 298 5 298 268 37 12 chr11 29372890 29372972 -119410500 + MIR3 SINE MIR 4 87 -121 28 61 0 0 chr11 29374393 29374442 -119409030 + AT_rich Low_complexity Low_complexity 1 49 0 38 39 0 39 chr11 29374463 29374541 -119408931 + AT_rich Low_complexity Low_complexity 1 75 0 240 202 146 11 chr11 29375236 29375325 -119408147 - HAL1 LINE L1 -856 1651 1551 1515 227 79 36 chr11 29375335 29375920 -119407552 - HAL1 LINE L1 -1046 1461 852 260 159 204 23 chr11 29376004 29376092 -119407380 + L1ME LINE L1 5385 5488 -682 1526 241 65 45 chr11 29376149 29376733 -119406739 + L1ME2 LINE L1 5442 6037 -127 359 61 20 0 chr11 29376987 29377036 -119406436 - MADE1 DNA Mariner -25 55 6 22 0 0 0 chr11 29377173 29377195 -119406277 + AT_rich Low_complexity Low_complexity 1 22 0 190 326 51 58 chr11 29378025 29378163 -119405309 - MIR SINE MIR -74 188 52 427 232 18 9 chr11 29381445 29381557 -119401915 + MER117 DNA MER1_type 1 113 -84 289 230 109 52 chr11 29381640 29381800 -119401672 + MIR3 SINE MIR 3 172 -59 278 262 24 0 chr11 29384354 29384438 -119399034 + GA-rich Low_complexity Low_complexity 1 86 0 1192 199 119 44 chr11 29384778 29385139 -119398333 + MER89 LTR ERV1 172 559 0 1477 109 19 0 chr11 29385705 29385916 -119397556 - L1PA10 LINE L1 -16 6152 5938 1973 186 3 19 chr11 29386240 29386611 -119396861 + MLT1A1 LTR MaLR 1 365 0 544 191 25 157 chr11 29387796 29388031 -119395441 + L2 LINE L2 3110 3313 0 288 282 128 8 chr11 29388119 29388236 -119395236 + MIR SINE MIR 73 203 -59 22 35 0 0 chr11 29388445 29388474 -119394998 + AT_rich Low_complexity Low_complexity 1 29 0 229 272 148 0 chr11 29388846 29388927 -119394545 + L2 LINE L2 3221 3313 0 655 124 0 0 chr11 29389182 29389279 -119394193 + L1P4 LINE L1 5594 5690 -476 630 269 58 93 chr11 29389380 29390269 -119393203 + L1MEc LINE L1 1545 2402 -3994 1461 214 27 63 chr11 29390287 29390810 -119392662 + L1M4 LINE L1 4323 4826 -1320 * 21751 41 3 2 chr11 29390802 29394483 -119388989 + L1PA4 LINE L1 2471 6148 -7 516 226 0 0 chr11 29394485 29394587 -119388885 - MER7A DNA MER2_type -245 101 2 294 83 0 0 chr11 29395435 29395471 -119388001 + (A)n Simple_repeat Simple_repeat 1 36 0 361 332 42 42 chr11 29395513 29395820 -119387652 + L1MEc LINE L1 1548 1854 -4542 313 282 54 54 chr11 29395909 29396150 -119387322 + L1MEc LINE L1 2183 2399 -3816 1843 240 125 15 chr11 29396169 29396689 -119386783 - MLT1E1 LTR MaLR -20 634 58 483 253 82 0 chr11 29396715 29396885 -119386587 + L1MEc LINE L1 2391 2574 -3641 411 222 11 11 chr11 29397073 29397253 -119386219 + (TA)n Simple_repeat Simple_repeat 1 180 0 215 110 93 17 chr11 29397285 29397403 -119386069 + (TA)n Simple_repeat Simple_repeat 1 127 0 40 49 0 0 chr11 29397515 29397576 -119385896 + AT_rich Low_complexity Low_complexity 1 61 0 9165 29 0 1 chr11 29397963 29399830 -119383642 + L1PA4 LINE L1 4285 6152 -3 249 305 12 0 chr11 29400007 29400089 -119383383 - MIR SINE MIR -8 254 172 211 392 7 28 chr11 29400566 29400709 -119382763 + MIR3 SINE MIR 7 146 -62 273 349 46 9 chr11 29400733 29400842 -119382630 + MIR SINE MIR 11 123 -139 26 50 0 0 chr11 29400878 29400918 -119382554 + AT_rich Low_complexity Low_complexity 1 40 0 1081 230 73 14 chr11 29401538 29401895 -119381577 - L1ME2 LINE L1 -19 6145 5768 2161 217 42 6 chr11 29401964 29402467 -119381005 - L1MB7 LINE L1 -20 6164 5644 186 133 0 0 chr11 29402468 29402498 -119380974 + (TATATG)n Simple_repeat Simple_repeat 3 32 0 1881 259 137 7 chr11 29402572 29403302 -119380170 - L1M4c LINE L1 -4591 1793 969 703 211 77 5 chr11 29403395 29403589 -119379883 + L1MC3 LINE L1 7560 7767 -18 300 336 18 0 chr11 29403656 29403769 -119379703 + MIR3 SINE MIR 87 201 -7 545 261 92 19 chr11 29404017 29404224 -119379248 - MIR SINE MIR -4 258 37 21 36 0 0 chr11 29404264 29404292 -119379180 + AT_rich Low_complexity Low_complexity 1 28 0 4645 31 0 0 chr11 29404655 29405208 -119378264 - L1PA4 LINE L1 0 6155 5603 2404 80 0 0 chr11 29405222 29405533 -119377939 + AluY SINE Alu 1 311 0 474 301 132 25 chr11 29407019 29407414 -119376058 + L1MEc LINE L1 2892 3328 -2887 563 313 112 70 chr11 29407468 29407941 -119375531 - L2 LINE L2 -819 2495 2003 449 208 0 104 chr11 29407977 29408121 -119375351 + L2 LINE L2 1916 2044 -1270 399 299 87 68 chr11 29408361 29408996 -119374476 + L1MEc LINE L1 3861 4507 -1708 24 96 0 0 chr11 29408997 29409070 -119374402 + AT_rich Low_complexity Low_complexity 1 73 0 200 143 65 26 chr11 29409100 29409177 -119374295 + (TA)n Simple_repeat Simple_repeat 1 80 0 318 250 243 7 chr11 29409229 29409306 -119374166 + L1M4b LINE L1 2 60 -6799 183 42 0 0 chr11 29409306 29409330 -119374142 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 318 250 243 7 chr11 29409330 29409404 -119374068 + L1M4b LINE L1 60 189 -6670 * 2579 269 49 27 chr11 29409398 29410723 -119372749 + L1M4b LINE L1 742 2104 -4847 1317 164 152 8 chr11 29412028 29412329 -119371143 - AluJb SINE Alu 0 340 2 583 284 59 22 chr11 29412479 29412800 -119370672 - L1MC4 LINE L1 -547 7495 7163 491 323 108 64 chr11 29412991 29413867 -119369605 - L1 LINE L1 -2945 3201 2287 303 28 0 0 chr11 29413956 29413992 -119369480 + (TG)n Simple_repeat Simple_repeat 2 37 0 252 0 0 0 chr11 29413991 29414019 -119369453 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 34 89 0 0 chr11 29414408 29414498 -119368974 + AT_rich Low_complexity Low_complexity 1 90 0 559 347 29 67 chr11 29414498 29415114 -119368358 - HAL1b LINE L1 -707 641 49 439 367 162 18 chr11 29415720 29416174 -119367298 - L2 LINE L2 -243 3070 2550 310 301 176 0 chr11 29416178 29416314 -119367158 - L2 LINE L2 -929 2385 2226 273 292 29 3 chr11 29416986 29417146 -119366326 + MIR SINE MIR 2 208 -54 22 0 0 0 chr11 29417282 29417304 -119366168 + AT_rich Low_complexity Low_complexity 1 22 0 754 257 0 33 chr11 29417606 29417789 -119365683 - MER5B DNA MER1_type 0 178 2 21 82 0 0 chr11 29417850 29417899 -119365573 + AT_rich Low_complexity Low_complexity 1 49 0 236 323 31 0 chr11 29417935 29418031 -119365441 - L1ME4a LINE L1 -79 6042 5944 40 21 0 0 chr11 29418508 29418555 -119364917 + AT_rich Low_complexity Low_complexity 1 47 0 2414 60 0 3 chr11 29418884 29419183 -119364289 - AluY SINE Alu -13 298 1 333 0 0 0 chr11 29421604 29421641 -119361831 + (CA)n Simple_repeat Simple_repeat 2 38 0 3170 81 37 0 chr11 29421733 29422168 -119361304 - MLT2A2 LTR ERVL 0 453 3 2356 84 18 60 chr11 29423646 29423846 -119359626 - THE1B LTR MaLR 0 364 186 2114 129 0 0 chr11 29423846 29424148 -119359324 - AluSx SINE Alu -10 302 1 2356 84 18 60 chr11 29424148 29424327 -119359145 - THE1B LTR MaLR -178 186 1 54 56 0 0 chr11 29424602 29424691 -119358781 + AT_rich Low_complexity Low_complexity 1 89 0 462 333 70 5 chr11 29424765 29424978 -119358494 - MIR SINE MIR 0 262 36 345 47 0 0 chr11 29425039 29425082 -119358390 + (TG)n Simple_repeat Simple_repeat 1 43 0 303 250 55 47 chr11 29425174 29425302 -119358170 + L1MC4 LINE L1 6575 6703 -1339 327 277 26 19 chr11 29425314 29425469 -119358003 + (TA)n Simple_repeat Simple_repeat 1 156 0 231 36 0 0 chr11 29426322 29426350 -119357122 + (TG)n Simple_repeat Simple_repeat 1 28 0 278 213 0 13 chr11 29426457 29426532 -119356940 + (CATA)n Simple_repeat Simple_repeat 3 76 0 354 315 27 7 chr11 29427696 29427845 -119355627 - MIR SINE MIR -10 252 101 210 71 0 0 chr11 29429575 29429603 -119353869 + (CA)n Simple_repeat Simple_repeat 2 29 0 229 163 41 0 chr11 29429603 29429652 -119353820 + L1MC4 LINE L1 6658 6708 -1334 190 288 14 41 chr11 29429925 29429998 -119353474 - L2 LINE L2 0 3313 3243 214 301 24 24 chr11 29430084 29430167 -119353305 + MIR SINE MIR 44 126 -136 1257 234 58 58 chr11 29430204 29430407 -119353065 + MLT1C LTR MaLR 5 207 -260 1881 123 4 7 chr11 29430407 29430683 -119352789 + AluSx SINE Alu 1 275 -37 1257 234 58 58 chr11 29430683 29430941 -119352531 + MLT1C LTR MaLR 206 466 -1 209 143 20 20 chr11 29431254 29431303 -119352169 + GA-rich Low_complexity Low_complexity 2 50 0 577 239 8 0 chr11 29432923 29433040 -119350432 - FLAM_A SINE Alu -11 122 5 222 206 151 27 chr11 29433107 29433180 -119350292 - L2 LINE L2 0 3313 3232 243 311 0 0 chr11 29433841 29433915 -119349557 - MER63 DNA MER1_type -362 700 1 374 364 68 22 chr11 29434769 29435184 -119348288 + L1ME LINE L1 34 467 -5929 546 235 51 99 chr11 29435554 29436110 -119347362 + L1ME LINE L1 667 1223 -4982 477 287 67 46 chr11 29436138 29436466 -119347006 + L1ME LINE L1 1240 1574 -4641 371 318 94 75 chr11 29436483 29436908 -119346564 + L1ME LINE L1 5386 5818 -372 1197 207 102 18 chr11 29437005 29437280 -119346192 + AluJb SINE Alu 3 300 -2 1408 199 17 30 chr11 29437603 29437904 -119345568 + AluJo SINE Alu 1 297 -15 21 71 0 0 chr11 29438552 29438594 -119344878 + AT_rich Low_complexity Low_complexity 1 42 0 561 300 60 15 chr11 29439476 29439676 -119343796 - MLT1I LTR MaLR -3 406 198 740 241 10 31 chr11 29439713 29439908 -119343564 + L1PB4 LINE L1 5966 6156 0 1803 194 13 76 chr11 29440161 29440635 -119342837 - L1MA10 LINE L1 0 6334 5891 236 280 65 0 chr11 29440635 29440728 -119342744 - MLT1I LTR MaLR -220 170 72 635 187 8 15 chr11 29440733 29440867 -119342605 - MLT1B LTR MaLR -247 143 11 2143 108 0 13 chr11 29441098 29441403 -119342069 - AluSg SINE Alu -1 309 9 462 145 103 62 chr11 29442042 29442187 -119341285 - L1MA9 LINE L1 -1 6311 6161 4933 176 24 25 chr11 29442195 29443853 -119339619 - L1MA7 LINE L1 0 6291 4645 1452 228 46 52 chr11 29443938 29444456 -119339016 + Charlie1b DNA MER1_type 1 515 -8 2703 111 13 0 chr11 29444501 29444889 -119338583 + L1PA10 LINE L1 5776 6168 0 33 25 0 0 chr11 29444934 29444974 -119338498 + AT_rich Low_complexity Low_complexity 1 40 0 4524 200 37 18 chr11 29445053 29446074 -119337398 - L1MC3 LINE L1 -1306 6479 5439 22 0 0 0 chr11 29446821 29446843 -119336629 + AT_rich Low_complexity Low_complexity 1 22 0 254 333 0 0 chr11 29447170 29447275 -119336197 + L1P LINE L1 3713 3817 -2329 215 242 16 32 chr11 29447516 29447578 -119335894 + MIR SINE MIR 80 140 -122 296 303 81 46 chr11 29447972 29448326 -119335146 + L1 LINE L1 3670 4055 -2091 1922 143 0 19 chr11 29448326 29448634 -119334838 + AluSg1 SINE Alu 1 302 -7 296 303 81 46 chr11 29448634 29448883 -119334589 + L1 LINE L1 4055 4294 -1852 508 264 7 0 chr11 29449961 29450105 -119333367 - MER69 DNA AcHobo 0 2526 2382 319 179 18 0 chr11 29450257 29450313 -119333159 - MER69 DNA AcHobo -2469 57 1 509 258 84 24 chr11 29450467 29450634 -119332838 - MER5B DNA MER1_type -1 177 1 254 314 17 25 chr11 29452005 29452123 -119331349 - L2 LINE L2 -5 3308 3192 * 1862 265 89 33 chr11 29452116 29452787 -119330685 - L2 LINE L2 -522 2792 2084 228 254 0 0 chr11 29453021 29453076 -119330396 + CT-rich Low_complexity Low_complexity 1 55 0 372 189 0 0 chr11 29453076 29453150 -119330322 + (TATATG)n Simple_repeat Simple_repeat 6 79 0 278 177 0 62 chr11 29453150 29453246 -119330226 + L1MC4 LINE L1 6614 6703 -1339 235 114 0 23 chr11 29453259 29453303 -119330169 + L1MCa LINE L1 2006 2048 -4378 379 333 108 7 chr11 29454151 29454357 -119329115 - MIR SINE MIR -14 248 20 230 331 116 8 chr11 29455155 29455276 -119328196 - L2 LINE L2 -2 3270 3137 2621 111 3 8 chr11 29455550 29455927 -119327545 - THE1C LTR MaLR 0 375 1 254 315 11 22 chr11 29455937 29456026 -119327446 + MER5A DNA MER1_type 102 189 0 234 0 0 0 chr11 29456498 29456524 -119326948 + (CA)n Simple_repeat Simple_repeat 2 27 0 180 0 0 0 chr11 29456523 29456543 -119326929 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 1371 256 76 10 chr11 29456670 29457077 -119326395 + MLT1C LTR MaLR 34 467 0 296 250 35 62 chr11 29457883 29458027 -119325445 + MER103 DNA DNA 6 145 -21 302 266 6 154 chr11 29458235 29458404 -119325068 + LTR67 LTR ERVL 149 292 -265 348 311 78 53 chr11 29459278 29459484 -119323988 - MLT1K LTR MaLR -6 582 372 2126 148 120 5 chr11 29459870 29460254 -119323218 + MSTA LTR MaLR 1 428 0 405 250 0 0 chr11 29461133 29461221 -119322251 - MLT1B LTR MaLR -2 388 301 421 172 36 25 chr11 29461282 29461434 -119322038 - MLT1B LTR MaLR -186 188 1 215 293 189 19 chr11 29462277 29462383 -119321089 - L2 LINE L2 -15 3257 3134 370 250 56 74 chr11 29462633 29462849 -119320623 - L1ME4a LINE L1 -121 6000 5789 1020 200 136 10 chr11 29462902 29463217 -119320255 - MSTA LTR MaLR 0 364 14 221 246 0 35 chr11 29463246 29463303 -119320169 - MIR SINE MIR -91 117 63 602 273 20 0 chr11 29463572 29463722 -119319750 + MIR SINE MIR 45 197 -65 1571 220 152 125 chr11 29463723 29464356 -119319116 - MLT1E2 LTR MaLR 0 626 5 221 0 0 33 chr11 29465623 29465653 -119317819 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1967 128 28 42 chr11 29465837 29466197 -119317275 - THE1A LTR MaLR 0 355 1 10694 106 35 4 chr11 29466197 29467730 -119315742 - THE1A-int LTR MaLR 0 1580 1 1964 145 11 41 chr11 29467730 29468096 -119315376 - THE1A LTR MaLR 0 355 1 2350 208 48 7 chr11 29468453 29469181 -119314291 + L1PA16 LINE L1 4780 5527 -638 2066 173 64 5 chr11 29469181 29469574 -119313898 + MSTA LTR MaLR 1 416 -12 8268 182 66 4 chr11 29469586 29471045 -119312427 + MSTA-int LTR MaLR 1 1564 -87 1223 7 0 0 chr11 29471045 29471185 -119312287 - L1PA2 LINE L1 0 6155 6016 8268 182 66 4 chr11 29471185 29471279 -119312193 + MSTA-int LTR MaLR 1564 1651 0 2059 174 60 39 chr11 29471279 29471396 -119312076 + MSTB LTR MaLR 1 114 -312 2736 81 8 6 chr11 29471396 29471756 -119311716 - THE1B LTR MaLR -3 361 1 2059 174 60 39 chr11 29471756 29472051 -119311421 + MSTB LTR MaLR 114 422 -4 3862 144 22 0 chr11 29472054 29472677 -119310795 + L1PA16 LINE L1 5521 6157 -9 198 0 0 0 chr11 29472687 29472709 -119310763 + (CATA)n Simple_repeat Simple_repeat 2 23 0 1050 256 47 91 chr11 29472775 29473135 -119310337 + MLT1E2 LTR MaLR 51 425 -168 297 0 0 0 chr11 29473135 29473168 -119310304 + (TG)n Simple_repeat Simple_repeat 2 34 0 1050 256 47 91 chr11 29473168 29473192 -119310280 + MLT1E2 LTR MaLR 425 449 -144 1587 184 3 28 chr11 29473192 29473474 -119309998 - AluJo SINE Alu -35 277 3 1050 256 47 91 chr11 29473474 29473693 -119309779 + MLT1E2 LTR MaLR 449 593 0 37 23 0 0 chr11 29474340 29474384 -119309088 + AT_rich Low_complexity Low_complexity 1 44 0 2281 167 59 101 chr11 29474384 29474841 -119308631 - L1MC2 LINE L1 -9 6335 5879 685 293 4 36 chr11 29474841 29475121 -119308351 - L1MB8 LINE L1 -273 5905 5635 234 276 0 0 chr11 29475713 29475771 -119307701 + MER103 DNA DNA 109 166 0 1862 197 69 17 chr11 29475989 29476396 -119307076 - MSTA LTR MaLR 0 428 1 301 200 0 0 chr11 29476416 29476476 -119306996 + MER103 DNA DNA 35 94 -72 1814 218 64 23 chr11 29477510 29477991 -119305481 + MLT1D LTR MaLR 1 501 -4 270 300 68 72 chr11 29478016 29478253 -119305219 + MIR SINE MIR 26 261 -1 369 302 137 41 chr11 29478539 29478951 -119304521 - L2 LINE L2 -114 3199 2740 1958 160 92 15 chr11 29478951 29479005 -119304467 - MSTB1 LTR MaLR 0 432 384 555 90 0 0 chr11 29479005 29479083 -119304389 - MADE1 DNA Mariner 0 80 3 1958 160 92 15 chr11 29479083 29479428 -119304044 - MSTB1 LTR MaLR -48 384 2 884 305 53 51 chr11 29479428 29479460 -119304012 - L2 LINE L2 -569 2745 2715 2477 51 6 16 chr11 29479460 29479773 -119303699 - AluY SINE Alu -1 310 1 884 305 53 51 chr11 29479773 29480251 -119303221 - L2 LINE L2 -599 2715 2234 310 215 54 65 chr11 29480555 29480648 -119302824 - MIR3 SINE MIR -54 154 63 2964 145 41 19 chr11 29480954 29481470 -119302002 - MER1A DNA MER1_type 0 527 1 348 264 57 93 chr11 29481520 29481660 -119301812 + MIR SINE MIR 11 145 -63 2318 73 3 7 chr11 29481743 29482031 -119301441 + AluSp SINE Alu 1 287 -26 2676 214 6 4 chr11 29482044 29482564 -119300908 - MER74A LTR ERVL -8 550 30 286 333 17 8 chr11 29483070 29483187 -119300285 - MIR SINE MIR -23 239 122 693 242 12 19 chr11 29483203 29483393 -119300079 - MLT1H LTR MaLR -307 242 14 326 294 98 33 chr11 29483589 29483773 -119299699 - MIR SINE MIR -54 208 13 243 311 25 17 chr11 29484000 29484119 -119299353 + GA-rich Low_complexity Low_complexity 3 122 0 6900 41 7 0 chr11 29484210 29485064 -119298408 + L1PA4 LINE L1 5296 6155 0 348 313 67 34 chr11 29486407 29486586 -119296886 - L2 LINE L2 0 3313 3129 717 267 99 56 chr11 29486647 29487056 -119296416 + LTR33A LTR ERVL 99 511 -12 3157 292 111 16 chr11 29487084 29488444 -119295028 - L2 LINE L2 -229 3084 1604 1226 162 154 22 chr11 29488452 29488484 -119294988 - L1PB4 LINE L1 -2 6154 6128 2431 147 60 0 chr11 29488484 29488886 -119294586 + MSTB LTR MaLR 1 426 0 1226 162 154 22 chr11 29488886 29489125 -119294347 - L1PB4 LINE L1 -28 6128 5847 1573 318 96 11 chr11 29489128 29489158 -119294314 - L2 LINE L2 -1695 1619 1593 1941 180 12 3 chr11 29489158 29489503 -119293969 - MER7A DNA MER2_type 0 346 1 1573 318 96 11 chr11 29489503 29490089 -119293383 - L2 LINE L2 -1721 1593 951 23121 35 17 1 chr11 29491760 29497197 -119286275 - L1PA3 LINE L1 -5 6150 580 769 52 0 0 chr11 29497166 29497263 -119286209 - L1PA3 LINE L1 -6048 98 2 * 22 35 0 0 chr11 29497410 29497439 -119286033 + AT_rich Low_complexity Low_complexity 1 29 0 4154 68 0 2 chr11 29497483 29498015 -119285457 + L1PA7 LINE L1 5563 6093 -61 297 128 0 0 chr11 29498022 29498069 -119285403 + (TA)n Simple_repeat Simple_repeat 2 48 0 716 302 76 44 chr11 29498071 29498478 -119284994 + L1ME1 LINE L1 77 496 -5900 647 189 0 0 chr11 29498483 29498589 -119284883 - Tigger3(Golem) DNA MER2_type -5 3024 2919 1674 276 92 49 chr11 29498744 29499485 -119283987 + L1ME1 LINE L1 850 1557 -4839 1780 126 79 7 chr11 29499485 29499762 -119283710 + AluSg SINE Alu 1 297 -13 1674 276 92 49 chr11 29499762 29500405 -119283067 + L1ME1 LINE L1 1557 2294 -4102 1722 171 23 11 chr11 29500421 29500772 -119282700 + L1MC2 LINE L1 5703 6057 -287 1477 156 53 47 chr11 29500774 29501113 -119282359 + MER4A LTR ERV1 1 341 -323 557 142 198 68 chr11 29501123 29501372 -119282100 + MER4C LTR ERV1 157 445 -20 1353 145 45 22 chr11 29501392 29501661 -119281811 + L1MC2 LINE L1 6066 6340 -4 1878 99 7 7 chr11 29501705 29501977 -119281495 + AluSc SINE Alu 37 308 -1 2287 260 34 26 chr11 29502026 29502067 -119281405 + L1ME1 LINE L1 2334 2373 -3842 252 86 0 0 chr11 29502067 29502102 -119281370 + (CA)n Simple_repeat Simple_repeat 2 36 0 2287 260 34 26 chr11 29502102 29502941 -119280531 + L1ME1 LINE L1 2373 3221 -2994 2879 230 83 41 chr11 29503081 29504058 -119279414 + L1MD2 LINE L1 5338 6355 -4 304 283 42 30 chr11 29504055 29504221 -119279251 + L1ME1 LINE L1 3401 3568 -2647 * 2626 251 79 14 chr11 29504226 29505204 -119278268 + L1ME1 LINE L1 3857 4897 -1318 353 239 28 9 chr11 29505258 29505367 -119278105 - L1MA10 LINE L1 0 6334 6224 302 0 26 0 chr11 29505371 29505409 -119278063 + (TCTA)n Simple_repeat Simple_repeat 2 40 0 1951 242 36 62 chr11 29505424 29506198 -119277274 + L1ME1 LINE L1 5477 6230 -5 186 246 0 66 chr11 29507081 29507142 -119276330 + L2 LINE L2 3141 3197 -75 241 356 0 0 chr11 29507677 29507767 -119275705 + MIR SINE MIR 101 190 -72 638 276 133 55 chr11 29507793 29508177 -119275295 + MLT1J1 LTR MaLR 33 446 0 187 343 0 29 chr11 29508738 29508808 -119274664 - MIR SINE MIR -118 90 23 342 243 29 0 chr11 29509847 29509987 -119273485 + (TA)n Simple_repeat Simple_repeat 2 145 0 22 88 0 0 chr11 29510036 29510093 -119273379 + AT_rich Low_complexity Low_complexity 1 57 0 260 75 75 0 chr11 29510107 29510160 -119273312 + LTR66 LTR ERVL 394 450 -160 301 381 44 11 chr11 29510847 29511028 -119272444 + L2 LINE L2 2857 3043 -229 1270 195 49 21 chr11 29511139 29511571 -119271901 - L1M4 LINE L1 -619 5555 5104 270 206 0 32 chr11 29511578 29511641 -119271831 - L1M4 LINE L1 -1276 4870 4810 19611 39 3 0 chr11 29511659 29514851 -119268621 - L1PA4 LINE L1 -3 6152 2954 898 108 89 32 chr11 29514851 29515009 -119268463 + Tigger3(Golem) DNA MER2_type 2782 2948 -81 278 139 0 0 chr11 29515035 29515078 -119268394 + Tigger3(Golem) DNA MER2_type 2880 2922 -107 303 189 24 52 chr11 29515115 29515240 -119268232 + Tigger3(Golem) DNA MER2_type 2854 2951 -78 247 185 93 0 chr11 29515240 29515294 -119268178 + Tigger3(Golem) DNA MER2_type 2887 2945 -84 391 94 71 82 chr11 29515309 29515394 -119268078 + Tigger3(Golem) DNA MER2_type 2868 2951 -78 312 171 0 92 chr11 29515391 29515467 -119268005 + Tigger3(Golem) DNA MER2_type 2868 2936 -93 * 345 164 0 81 chr11 29515469 29515607 -119267865 + Tigger3(Golem) DNA MER2_type 2868 2954 -75 301 152 25 89 chr11 29515600 29515679 -119267793 + Tigger3(Golem) DNA MER2_type 2877 2950 -79 * 318 200 0 31 chr11 29515661 29515726 -119267746 + Tigger3(Golem) DNA MER2_type 2878 2940 -89 * 350 111 0 97 chr11 29515721 29515793 -119267679 + Tigger3(Golem) DNA MER2_type 2869 2933 -96 367 97 0 97 chr11 29515811 29515883 -119267589 + Tigger3(Golem) DNA MER2_type 2878 2942 -87 292 160 0 0 chr11 29515886 29515936 -119267536 + Tigger3(Golem) DNA MER2_type 2881 2930 -99 * 824 200 19 12 chr11 29515931 29516091 -119267381 + Tigger3(Golem) DNA MER2_type 2869 3029 0 388 302 195 54 chr11 29516091 29516614 -119266858 - L2 LINE L2 -22 3291 2681 278 262 24 0 chr11 29518559 29518643 -119264829 + GA-rich Low_complexity Low_complexity 1 86 0 1204 197 119 44 chr11 29518983 29519344 -119264128 + MER89 LTR ERV1 172 559 0 1477 109 19 0 chr11 29519910 29520121 -119263351 - L1PA10 LINE L1 -16 6152 5938 1257 165 5 31 chr11 29520445 29520669 -119262803 + MLT1A1 LTR MaLR 1 218 -147 254 234 171 27 chr11 29521928 29522039 -119261433 - MIR SINE MIR -10 252 126 290 25 0 25 chr11 29522904 29522944 -119260528 + (TC)n Simple_repeat Simple_repeat 2 40 0 470 245 187 26 chr11 29524150 29524305 -119259167 - MER5A DNA MER1_type 0 189 10 427 296 60 40 chr11 29524553 29524752 -119258720 - MIR SINE MIR -40 222 20 182 286 36 98 chr11 29524712 29524824 -119258648 + MIR SINE MIR 41 145 -63 * 319 292 71 30 chr11 29524844 29525012 -119258460 + MER5B DNA MER1_type 1 175 -3 1977 162 0 0 chr11 29526313 29526610 -119256862 - AluJb SINE Alu -14 298 2 2385 162 36 2 chr11 29527437 29527851 -119255621 + MSTA LTR MaLR 1 428 0 9466 164 27 9 chr11 29527851 29529458 -119254014 + MSTA-int LTR MaLR 1 1636 -15 1348 172 31 12 chr11 29529490 29529746 -119253726 + MSTA LTR MaLR 3 263 -165 580 180 27 0 chr11 29529746 29529857 -119253615 - L1M3f LINE L1 -4684 644 531 1086 179 0 0 chr11 29529859 29530038 -119253434 + MSTA LTR MaLR 250 428 0 653 312 41 19 chr11 29530099 29530368 -119253104 + LTR33 LTR ERVL 10 284 -237 3586 172 10 67 chr11 29530841 29531544 -119251928 - L1M3f LINE L1 -4660 668 6 1735 183 71 45 chr11 29531710 29532132 -119251340 + Tigger2a DNA MER2_type 1 433 -1 2976 63 5 0 chr11 29532145 29532526 -119250946 + L1PA7 LINE L1 5772 6154 0 315 71 0 0 chr11 29534076 29534118 -119249354 + (TG)n Simple_repeat Simple_repeat 2 43 0 50 31 0 0 chr11 29534310 29534374 -119249098 + AT_rich Low_complexity Low_complexity 1 64 0 2396 73 0 0 chr11 29536461 29536780 -119246692 + AluY SINE Alu 1 311 0 539 291 141 60 chr11 29537127 29537673 -119245799 - MLT1E LTR MaLR -3 590 1 183 162 0 0 chr11 29537694 29537731 -119245741 + A-rich Low_complexity Low_complexity 1 37 0 214 203 0 85 chr11 29538117 29538176 -119245296 + MIR SINE MIR 208 261 -1 2107 91 7 45 chr11 29539398 29539706 -119243766 - AluSq SINE Alu -13 300 5 298 268 37 12 chr11 29540370 29540452 -119243020 + MIR3 SINE MIR 4 87 -121 28 61 0 0 chr11 29541872 29541921 -119241551 + AT_rich Low_complexity Low_complexity 1 49 0 38 39 0 39 chr11 29541942 29542020 -119241452 + AT_rich Low_complexity Low_complexity 1 75 0 240 202 146 11 chr11 29542715 29542804 -119240668 - HAL1 LINE L1 -856 1651 1551 1515 227 79 36 chr11 29542814 29543399 -119240073 - HAL1 LINE L1 -1046 1461 852 260 159 204 23 chr11 29543483 29543571 -119239901 + L1ME LINE L1 5385 5488 -682 1526 241 65 45 chr11 29543628 29544212 -119239260 + L1ME2 LINE L1 5442 6037 -127 359 61 20 0 chr11 29544466 29544515 -119238957 - MADE1 DNA Mariner -25 55 6 22 0 0 0 chr11 29544652 29544674 -119238798 + AT_rich Low_complexity Low_complexity 1 22 0 190 326 51 58 chr11 29545504 29545642 -119237830 - MIR SINE MIR -74 188 52 1539 229 22 14 chr11 29548955 29549317 -119234155 + MLT1A1 LTR MaLR 1 365 0 5138 152 10 24 chr11 29549325 29549978 -119233494 + L1MB1 LINE L1 5018 5647 -521 2218 110 0 7 chr11 29549978 29550277 -119233195 + AluSc SINE Alu 1 297 -12 5138 152 10 24 chr11 29550277 29550787 -119232685 + L1MB1 LINE L1 5647 6162 -6 2449 87 0 0 chr11 29551057 29551368 -119232104 - AluY SINE Alu 0 311 1 27 29 0 0 chr11 29551589 29551623 -119231849 + AT_rich Low_complexity Low_complexity 1 34 0 354 304 109 70 chr11 29551747 29552060 -119231412 - L1MEd LINE L1 -2470 3659 3335 183 100 0 0 chr11 29552088 29552118 -119231354 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 1640 141 28 94 chr11 29552827 29553188 -119230284 - MER1B DNA MER1_type 0 337 1 263 258 0 0 chr11 29553244 29553310 -119230162 + MER116 DNA Mariner 1 66 -14 514 282 18 0 chr11 29553427 29553597 -119229875 + L1ME3A LINE L1 5776 5948 -222 21 0 0 0 chr11 29553746 29553767 -119229705 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr11 29553879 29553911 -119229561 + AT_rich Low_complexity Low_complexity 1 32 0 302 281 102 59 chr11 29554182 29554491 -119228981 - L1MEd LINE L1 -2751 3378 3084 1982 125 40 0 chr11 29554491 29554787 -119228685 - AluSg SINE Alu -2 308 1 302 281 102 59 chr11 29554787 29554900 -119228572 - L1MEd LINE L1 -3045 3084 2977 279 0 0 0 chr11 29554900 29554931 -119228541 + (TA)n Simple_repeat Simple_repeat 2 32 0 302 281 102 59 chr11 29554931 29555539 -119227933 - L1MEd LINE L1 -3152 2977 2303 23 0 0 0 chr11 29555543 29555566 -119227906 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr11 29556203 29556232 -119227240 + AT_rich Low_complexity Low_complexity 1 29 0 260 300 104 24 chr11 29556271 29556521 -119226951 - HAL1 LINE L1 -862 1645 1376 253 330 46 31 chr11 29556568 29556829 -119226643 - L1MEd LINE L1 -4897 1222 958 233 268 113 0 chr11 29557049 29557120 -119226352 - HAL1 LINE L1 -749 1758 1680 652 332 69 24 chr11 29557130 29557591 -119225881 - HAL1 LINE L1 -1222 1285 804 186 133 0 0 chr11 29558391 29558421 -119225051 + (TG)n Simple_repeat Simple_repeat 2 31 0 249 281 79 22 chr11 29558536 29558675 -119224797 - L1ME LINE L1 -592 5570 5424 21 0 0 0 chr11 29558801 29558822 -119224650 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr11 29558863 29558906 -119224566 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr11 29559396 29559417 -119224055 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr11 29560207 29560229 -119223243 + AT_rich Low_complexity Low_complexity 1 22 0 281 236 62 120 chr11 29560239 29560447 -119223025 - MIR SINE MIR -10 252 57 327 295 121 30 chr11 29561509 29561675 -119221797 + MIR SINE MIR 10 190 -72 1501 104 45 0 chr11 29562137 29562357 -119221115 + MER30 DNA MER1_type 1 230 0 194 302 111 16 chr11 29562532 29562595 -119220877 + MIR SINE MIR 32 100 -108 23 0 0 0 chr11 29562689 29562712 -119220760 + AT_rich Low_complexity Low_complexity 1 23 0 766 297 24 0 chr11 29562733 29562942 -119220530 - MIR SINE MIR -41 221 8 23 0 0 0 chr11 29563465 29563488 -119219984 + AT_rich Low_complexity Low_complexity 1 23 0 682 183 8 0 chr11 29563504 29563624 -119219848 - FLAM_C SINE Alu -20 123 3 430 293 20 13 chr11 29563752 29563902 -119219570 + MIR SINE MIR 106 256 -6 306 0 0 0 chr11 29564216 29564250 -119219222 + (CA)n Simple_repeat Simple_repeat 1 34 0 1645 251 15 23 chr11 29564998 29565469 -119218003 - MLT1C LTR MaLR 0 467 1 181 397 0 0 chr11 29566194 29566257 -119217215 - MIR SINE MIR -55 153 91 309 287 47 16 chr11 29566756 29566885 -119216587 + L2 LINE L2 3123 3255 -58 215 290 145 30 chr11 29567509 29567640 -119215832 + MIR SINE MIR 1 146 -116 26 50 0 0 chr11 29569482 29569522 -119213950 + AT_rich Low_complexity Low_complexity 1 40 0 324 351 53 0 chr11 29570077 29570228 -119213244 - MIR SINE MIR -65 197 39 28 0 0 0 chr11 29570412 29570440 -119213032 + AT_rich Low_complexity Low_complexity 1 28 0 199 289 0 0 chr11 29570877 29570922 -119212550 - L3 LINE CR1 -19 1558 1514 389 293 58 67 chr11 29570935 29571216 -119212256 - L1ME4a LINE L1 -13 6108 5833 1534 203 10 17 chr11 29571216 29571506 -119211966 + AluJo SINE Alu 1 288 -24 389 293 58 67 chr11 29571506 29571746 -119211726 - L1ME4a LINE L1 -288 5833 5592 1100 175 87 159 chr11 29571840 29572474 -119210998 - LTR4 LTR ERV1 0 588 1 8856 171 49 32 chr11 29572475 29574217 -119209255 - HERV3 LTR ERV1 0 8426 6656 38404 162 33 21 chr11 29574217 29580677 -119202795 - HERV3 LTR ERV1 -1871 6555 19 1159 179 88 148 chr11 29580700 29581322 -119202150 - LTR4 LTR ERV1 -3 585 1 847 279 27 0 chr11 29581798 29582017 -119201455 + MER115 DNA AcHobo 462 686 -7 354 266 71 71 chr11 29582240 29582492 -119200980 + L1MC4a LINE L1 3914 4165 -1981 370 279 106 56 chr11 29582878 29583376 -119200096 + L1MC4a LINE L1 4738 5260 -886 201 244 15 7 chr11 29583541 29583676 -119199796 + (TA)n Simple_repeat Simple_repeat 2 137 0 2715 260 123 41 chr11 29583774 29585102 -119198370 + L1MC4a LINE L1 5269 6705 -1103 2358 235 117 29 chr11 29585140 29586001 -119197471 + L1MC4 LINE L1 7106 8042 0 21 71 0 0 chr11 29586812 29586854 -119196618 + AT_rich Low_complexity Low_complexity 1 42 0 2575 172 70 78 chr11 29587383 29588079 -119195393 + LTR8 LTR ERV1 1 691 0 2045 125 0 0 chr11 29589325 29589613 -119193859 - AluSq SINE Alu -10 303 16 233 154 39 0 chr11 29589737 29589789 -119193683 + GA-rich Low_complexity Low_complexity 2 55 0 329 291 169 0 chr11 29590789 29590937 -119192535 + MIR SINE MIR 51 223 -39 21 0 0 0 chr11 29591346 29591367 -119192105 + AT_rich Low_complexity Low_complexity 1 21 0 31 0 0 0 chr11 29591977 29592008 -119191464 + AT_rich Low_complexity Low_complexity 1 31 0 1292 300 124 20 chr11 29592857 29593404 -119190068 - MLT2F LTR ERVL -1 662 59 1014 314 89 28 chr11 29593743 29594180 -119189292 - LTR33 LTR ERVL -55 466 3 591 15 0 0 chr11 29595194 29595262 -119188210 + (TA)n Simple_repeat Simple_repeat 1 68 0 2129 112 30 0 chr11 29595467 29595762 -119187710 + AluSq SINE Alu 1 304 -9 443 167 11 0 chr11 29596710 29596800 -119186672 + CT-rich Low_complexity Low_complexity 2 92 0 234 250 132 0 chr11 29596772 29596840 -119186632 - AluS SINE Alu -1 299 223 * 335 167 15 0 chr11 29596893 29596959 -119186513 + LTR30 LTR ERV1 552 618 -104 935 115 0 0 chr11 29596987 29597109 -119186363 - FLAM_C SINE Alu -20 123 2 354 253 78 39 chr11 29597146 29597300 -119186172 - MLT1J2 LTR MaLR -290 160 1 13849 43 1 2 chr11 29597502 29599318 -119184154 + L1PA4 LINE L1 1188 3001 -3145 1554 40 0 0 chr11 29599316 29599515 -119183957 + L1P LINE L1 4551 4749 -1397 * 19434 35 0 1 chr11 29599515 29602663 -119180809 + L1PA4 LINE L1 3006 6153 -2 375 333 0 0 chr11 29602827 29602929 -119180543 + MIR SINE MIR 38 139 -69 918 222 43 30 chr11 29602972 29603202 -119180270 - MIR SINE MIR -15 247 15 241 253 36 12 chr11 29603212 29603295 -119180177 - MLT1L LTR MaLR -2 613 529 273 261 170 18 chr11 29653953 29654118 -119129354 - L2 LINE L2 -19 3294 3105 268 385 81 0 chr11 29654213 29654361 -119129111 + L2 LINE L2 3100 3259 -13 967 113 0 0 chr11 29654565 29654689 -119128783 - AluY SINE Alu -187 124 1 424 233 9 60 chr11 29654894 29655010 -119128462 + MER81 DNA DNA 3 112 -2 407 279 88 19 chr11 29655876 29656091 -119127381 - L1ME4a LINE L1 -266 5855 5626 1045 270 81 48 chr11 29657091 29657295 -119126177 - MLT1H1 LTR MaLR -84 471 275 2406 118 22 3 chr11 29657295 29657652 -119125820 + THE1B LTR MaLR 1 364 0 1045 270 81 48 chr11 29657652 29657903 -119125569 - MLT1H1 LTR MaLR -280 275 1 278 348 19 62 chr11 29658094 29658255 -119125217 + MIR SINE MIR 34 147 -61 688 219 118 92 chr11 29658363 29658678 -119124794 - MER46C DNA MER2_type -15 323 1 392 314 66 7 chr11 29658873 29659010 -119124462 + MIR SINE MIR 108 252 -10 234 176 0 0 chr11 29659015 29659066 -119124406 + CT-rich Low_complexity Low_complexity 1 51 0 240 238 111 40 chr11 29659277 29659403 -119124069 - L2 LINE L2 -189 3083 2949 2131 107 0 7 chr11 29659817 29660115 -119123357 - AluSq SINE Alu -17 296 1 960 137 17 57 chr11 29660903 29661078 -119122394 + Tigger2a DNA MER2_type 4 171 -263 2037 171 72 0 chr11 29661087 29661474 -119121998 - Tigger2 DNA MER2_type -1 2717 2303 1695 89 69 82 chr11 29661497 29661800 -119121672 - AluY SINE Alu -10 301 3 820 231 5 41 chr11 29661832 29662027 -119121445 + AluJo SINE Alu 1 188 -124 374 315 0 28 chr11 29662145 29662326 -119121146 + G-rich Low_complexity Low_complexity 3 178 0 371 286 6 45 chr11 29662341 29662519 -119120953 + G-rich Low_complexity Low_complexity 1 171 0 5260 161 21 10 chr11 29662569 29662668 -119120804 - L1P4 LINE L1 -467 5694 5598 1791 149 14 3 chr11 29662668 29662956 -119120516 - AluSx SINE Alu -18 294 4 5260 161 21 10 chr11 29662956 29664253 -119119219 - L1P4 LINE L1 -563 5598 4285 854 226 204 16 chr11 29664252 29664566 -119118906 - L1MB1 LINE L1 -1 6167 5795 * 1159 187 37 40 chr11 29664566 29664839 -119118633 + MER45B DNA AcHobo 480 751 -289 1993 147 7 0 chr11 29665206 29665505 -119117967 + AluSx SINE Alu 5 305 -7 266 368 98 10 chr11 29665666 29665859 -119117613 + MIR SINE MIR 46 255 -7 483 299 27 18 chr11 29666514 29666738 -119116734 - L1MB1 LINE L1 -340 5781 5556 509 318 145 30 chr11 29666744 29667244 -119116228 + L2 LINE L2 2729 3312 -1 21 36 0 0 chr11 29667462 29667490 -119115982 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr11 29667526 29667549 -119115923 + AT_rich Low_complexity Low_complexity 1 23 0 211 305 8 34 chr11 29667726 29667844 -119115628 + A-rich Low_complexity Low_complexity 3 117 0 2012 122 28 0 chr11 29668894 29669208 -119114264 - AluSq SINE Alu 0 322 1 356 336 15 0 chr11 29669245 29669376 -119114096 - MIR SINE MIR -56 206 74 272 340 41 37 chr11 29670026 29670294 -119113178 - ERVL LTR ERVL -4342 1422 1154 9186 104 12 6 chr11 29670435 29671715 -119111757 - THE1A-int LTR MaLR -290 1290 3 2595 99 6 0 chr11 29671717 29672070 -119111402 - THE1A LTR MaLR 0 355 1 10420 215 62 24 chr11 29672528 29678874 -119104598 + L1PB1 LINE L1 31 6857 -10 924 164 13 0 chr11 29679006 29679158 -119104314 + THE1A LTR MaLR 202 355 0 2850 106 25 7 chr11 29679181 29679623 -119103849 + L1PA13 LINE L1 5714 6163 0 30 45 0 0 chr11 29679623 29679667 -119103805 + AT_rich Low_complexity Low_complexity 1 44 0 566 109 277 0 chr11 29679669 29679788 -119103684 + L1PA13 LINE L1 6001 6152 -11 328 304 86 50 chr11 29679924 29680670 -119102802 + L1MEc LINE L1 1039 1811 -4585 1371 283 43 48 chr11 29680912 29681931 -119101541 + L1M4 LINE L1 3339 4352 -1794 1319 158 41 12 chr11 29683037 29683283 -119100189 - Tigger2 DNA MER2_type 0 2718 2466 271 77 77 0 chr11 29683285 29683324 -119100148 + Tigger2 DNA MER2_type 3 44 -2674 2093 136 0 13 chr11 29683548 29683858 -119099614 - AluSx SINE Alu -6 306 1 207 354 49 12 chr11 29683944 29684026 -119099446 + MIR SINE MIR 23 107 -155 375 277 73 23 chr11 29684859 29685036 -119098436 - MER112 DNA MER1_type -9 251 66 270 176 0 0 chr11 29685734 29685785 -119097687 + (TG)n Simple_repeat Simple_repeat 2 52 0 703 379 75 7 chr11 29685809 29686385 -119097087 - L2 LINE L2 -970 2344 1730 1449 313 66 42 chr11 29686468 29687335 -119096137 + L2 LINE L2 2263 3150 -163 437 274 9 0 chr11 29688236 29688342 -119095130 - MER94 DNA DNA -15 119 13 1619 117 80 8 chr11 29688949 29689198 -119094274 - AluSg SINE Alu -19 291 25 25 0 0 0 chr11 29689388 29689413 -119094059 + AT_rich Low_complexity Low_complexity 1 25 0 577 304 33 19 chr11 29689464 29689678 -119093794 + MIR SINE MIR 32 248 -14 258 107 54 0 chr11 29689814 29689870 -119093602 + CT-rich Low_complexity Low_complexity 3 61 0 240 238 0 0 chr11 29690324 29690387 -119093085 + (TA)n Simple_repeat Simple_repeat 2 64 0 1255 273 50 70 chr11 29691563 29692120 -119091352 - MER77 LTR ERV1 -4 601 56 361 333 110 18 chr11 29693532 29693590 -119089882 - MIR SINE MIR -13 249 198 514 156 272 72 chr11 29693590 29693770 -119089702 + MER20 DNA MER1_type 4 219 0 361 333 110 18 chr11 29693770 29693939 -119089533 - MIR SINE MIR -64 198 1 474 347 90 12 chr11 29694612 29694946 -119088526 - L2 LINE L2 -456 2858 2499 234 322 185 19 chr11 29695049 29695260 -119088212 - MIR SINE MIR -16 246 1 413 289 72 7 chr11 29695879 29696031 -119087441 - MIR SINE MIR -68 194 33 491 184 20 10 chr11 29696239 29696337 -119087135 - MER20 DNA MER1_type 0 219 121 3331 142 21 20 chr11 29696337 29696447 -119087025 + L1MA8 LINE L1 5668 5776 -515 185 62 0 31 chr11 29696447 29696479 -119086993 + (TA)n Simple_repeat Simple_repeat 2 32 0 3331 142 21 20 chr11 29696479 29696972 -119086500 + L1MA8 LINE L1 5776 6272 -19 447 183 66 124 chr11 29697004 29697141 -119086331 - MER20 DNA MER1_type -90 129 1 374 305 44 35 chr11 29698267 29698470 -119085002 + MIR SINE MIR 2 206 -56 245 287 32 32 chr11 29698553 29698647 -119084825 - MER5B DNA MER1_type -59 119 26 1013 282 50 9 chr11 29698693 29699016 -119084456 - MER58B DNA MER1_type 0 341 6 770 236 62 0 chr11 29699028 29699206 -119084266 - MER5A DNA MER1_type 0 189 1 921 241 62 21 chr11 29699406 29699647 -119083825 + MIR SINE MIR 12 262 0 269 286 173 38 chr11 29700004 29700137 -119083335 - L2 LINE L2 -1 3271 3121 2800 88 44 14 chr11 29700275 29700706 -119082766 + MLT2A1 LTR ERVL 1 444 0 1857 194 80 39 chr11 29701303 29701788 -119081684 + MLT1D LTR MaLR 1 505 0 221 342 17 43 chr11 29702103 29702220 -119081252 + L2 LINE L2 2299 2412 -902 28 0 0 0 chr11 29702273 29702301 -119081171 + AT_rich Low_complexity Low_complexity 1 28 0 1050 297 103 24 chr11 29702345 29702871 -119080601 + L2 LINE L2 2505 3064 -249 280 216 54 14 chr11 29704030 29704104 -119079368 + MLT1K LTR MaLR 507 583 -5 342 0 0 0 chr11 29704557 29704595 -119078877 + (CA)n Simple_repeat Simple_repeat 2 39 0 561 278 67 0 chr11 29704826 29705035 -119078437 + L1M4 LINE L1 4007 4229 -1917 2071 161 77 17 chr11 29705153 29705557 -119077915 - MSTA LTR MaLR 0 428 1 997 152 30 18 chr11 29705710 29705874 -119077598 + AluJo SINE Alu 1 166 -146 307 392 87 15 chr11 29706066 29706400 -119077072 - L3 LINE CR1 -1215 362 5 3646 66 6 0 chr11 29706439 29706906 -119076566 - L1PA7 LINE L1 -324 5830 5361 2331 69 3 0 chr11 29706906 29707209 -119076263 + L1PA7 LINE L1 5847 6153 -1 253 291 76 0 chr11 29707816 29707895 -119075577 - L2 LINE L2 0 3272 3188 370 304 0 16 chr11 29708163 29708288 -119075184 - MIR SINE MIR -56 206 84 347 254 148 49 chr11 29709483 29709625 -119073847 - MLT1I LTR MaLR 0 409 254 460 150 12 12 chr11 29709694 29709774 -119073698 - MLT1I LTR MaLR -268 141 62 5642 140 72 39 chr11 29709807 29711033 -119072439 - MER11A LTR ERVK 0 1266 1 256 307 40 0 chr11 29711057 29711132 -119072340 + MIR SINE MIR 16 93 -169 368 258 21 86 chr11 29711195 29711381 -119072091 - L2 LINE L2 -1 3312 3139 * 1303 254 98 93 chr11 29711380 29712015 -119071457 - L2 LINE L2 -511 2803 2166 224 301 55 0 chr11 29712025 29712098 -119071374 + MIR SINE MIR 186 262 0 1566 179 3 28 chr11 29712478 29712763 -119070709 + AluJb SINE Alu 3 280 -32 273 89 0 0 chr11 29712763 29712808 -119070664 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 2119 91 35 0 chr11 29712959 29713245 -119070227 + AluSg1 SINE Alu 1 296 -13 827 273 72 37 chr11 29713586 29714131 -119069341 + L1ME4a LINE L1 5547 6110 -11 244 162 0 0 chr11 29714556 29714593 -119068879 - MER53 DNA DNA -152 37 1 252 0 0 0 chr11 29715602 29715630 -119067842 + (TG)n Simple_repeat Simple_repeat 1 28 0 333 235 0 0 chr11 29716042 29716123 -119067349 - MER103 DNA DNA -78 88 8 646 194 8 8 chr11 29716461 29716585 -119066887 + MLT1A1 LTR MaLR 3 126 -239 1096 190 0 51 chr11 29716924 29717161 -119066311 - AluJb SINE Alu -4 308 84 1849 159 20 3 chr11 29718554 29718850 -119064622 + AluSx SINE Alu 1 301 -11 1099 219 11 14 chr11 29719241 29719520 -119063952 - L1P LINE L1 -772 5374 5097 23 33 0 0 chr11 29719996 29720026 -119063446 + AT_rich Low_complexity Low_complexity 1 30 0 436 319 4 94 chr11 29720691 29720926 -119062546 - L2 LINE L2 -230 3042 2829 28 0 0 0 chr11 29721412 29721440 -119062032 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 29721714 29721736 -119061736 + AT_rich Low_complexity Low_complexity 1 22 0 2144 110 7 10 chr11 29722361 29722670 -119060802 - AluSq SINE Alu -5 308 1 325 303 149 11 chr11 29723567 29723755 -119059717 + MIR SINE MIR 15 228 -34 239 54 27 0 chr11 29723868 29723905 -119059567 + (CA)n Simple_repeat Simple_repeat 1 38 0 380 160 100 40 chr11 29724952 29725052 -119058420 - LTR16C LTR ERVL -1 490 385 257 357 24 0 chr11 29725052 29725136 -119058336 - LTR16C LTR ERVL -270 221 136 357 310 58 41 chr11 29725553 29725724 -119057748 + MIR SINE MIR 15 188 -74 221 303 13 40 chr11 29725797 29725873 -119057599 + L3 LINE CR1 1497 1570 -7 2706 109 23 18 chr11 29726088 29726530 -119056942 - MLT2A1 LTR ERVL 0 444 1 1517 184 0 46 chr11 29727098 29727403 -119056069 + AluJb SINE Alu 6 296 -16 1553 284 72 2 chr11 29727404 29727837 -119055635 - MER45B DNA AcHobo -577 463 1 207 0 0 0 chr11 29727855 29727878 -119055594 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 22000 52 5 5 chr11 29727901 29732887 -119050585 - L1PA5 LINE L1 -4 6150 1041 7375 104 3 5 chr11 29732889 29733930 -119049542 + L1PA5 LINE L1 13 1051 -5095 197 337 11 103 chr11 29734654 29734829 -119048643 - MIR SINE MIR -61 201 43 537 92 0 0 chr11 29735402 29735478 -119047994 + (GA)n Simple_repeat Simple_repeat 1 76 0 195 312 34 34 chr11 29736106 29736234 -119047238 - L2 LINE L2 -334 2979 2852 2759 90 11 13 chr11 29736410 29736921 -119046551 - L1PA7 LINE L1 -502 5652 5143 3492 100 0 6 chr11 29736921 29737416 -119046056 + L1PA7 LINE L1 5656 6151 -3 1785 149 8 67 chr11 29737792 29738167 -119045305 + THE1A LTR MaLR 1 353 -2 11369 105 4 1 chr11 29738169 29739744 -119043728 + THE1A-int LTR MaLR 1 1580 0 1693 144 8 107 chr11 29739744 29740126 -119043346 + THE1A LTR MaLR 1 344 -11 2264 122 34 3 chr11 29740195 29740547 -119042925 + THE1B LTR MaLR 1 363 -1 771 301 59 23 chr11 29740595 29741011 -119042461 - LTR33 LTR ERVL -2 519 12 747 343 62 82 chr11 29741487 29741667 -119041805 - L2 LINE L2 -12 3260 3078 1634 135 81 4 chr11 29741667 29741950 -119041522 + AluSx SINE Alu 5 307 0 747 343 62 82 chr11 29741950 29743044 -119040428 - L2 LINE L2 -194 3078 1990 336 207 17 52 chr11 29743512 29743686 -119039786 + (TA)n Simple_repeat Simple_repeat 1 168 0 421 285 8 41 chr11 29744283 29744406 -119039066 + L2 LINE L2 3151 3269 -3 203 279 106 19 chr11 29744678 29744782 -119038690 - MIR SINE MIR -16 246 134 246 273 91 32 chr11 29744799 29744953 -119038519 - L2 LINE L2 -2 3311 3149 5627 140 96 19 chr11 29745123 29745946 -119037526 + Tigger3b DNA MER2_type 3 931 -2097 203 61 30 0 chr11 29745946 29745979 -119037493 + (CTCA)n Simple_repeat Simple_repeat 1 34 0 5627 140 96 19 chr11 29745979 29746237 -119037235 + Tigger3b DNA MER2_type 931 1168 -63 478 214 31 0 chr11 29746318 29746416 -119037056 + Tigger3b DNA MER2_type 1129 1229 -2 271 295 49 0 chr11 29746419 29746480 -119036992 - L2 LINE L2 -8 3264 3201 210 298 0 0 chr11 29747442 29747499 -119035973 + MIR3 SINE MIR 151 207 -1 23 0 9 0 chr11 29747786 29747849 -119035623 + AT_rich Low_complexity Low_complexity 1 23 0 11462 214 22 8 chr11 29748192 29751927 -119031545 + L1PA15 LINE L1 2373 6163 -2 227 330 23 0 chr11 29752173 29752261 -119031211 - L1MC4 LINE L1 -1339 6703 6614 225 315 0 22 chr11 29752189 29752278 -119031194 + L1MC4 LINE L1 6614 6700 -1342 * 233 211 0 66 chr11 29752308 29752384 -119031088 - L1MCa LINE L1 -4361 2065 1995 29 0 0 0 chr11 29753476 29753505 -119029967 + AT_rich Low_complexity Low_complexity 1 29 0 427 194 0 32 chr11 29754161 29754254 -119029218 + MLT2B2 LTR ERVL 386 475 -40 375 408 73 35 chr11 29754366 29754707 -119028765 - L2 LINE L2 -341 2973 2620 281 26 0 26 chr11 29754855 29754894 -119028578 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 215 293 0 17 chr11 29757573 29757631 -119025841 + MIR SINE MIR 101 157 -105 564 289 45 20 chr11 29757638 29757839 -119025633 - MIR SINE MIR 0 262 57 277 337 122 0 chr11 29757840 29757938 -119025534 + MIR SINE MIR 153 262 0 332 177 114 0 chr11 29758577 29758656 -119024816 - LTR33 LTR ERVL 0 521 434 1088 296 61 58 chr11 29758676 29759138 -119024334 - LTR33 LTR ERVL -58 463 1 247 302 52 0 chr11 29759313 29759429 -119024043 - LTR67 LTR ERVL -2 555 434 531 315 44 1 chr11 29760133 29760314 -119023158 - MIR SINE MIR -41 221 36 490 157 0 0 chr11 29761383 29761466 -119022006 - L1MC3 LINE L1 -1 7784 7702 354 23 0 0 chr11 29762315 29762358 -119021114 + (TG)n Simple_repeat Simple_repeat 2 44 0 309 356 46 36 chr11 29762386 29762580 -119020892 - MIR SINE MIR -38 224 29 1968 128 0 20 chr11 29765209 29765514 -119017958 - AluSg SINE Alu -11 299 1 23 33 0 0 chr11 29765784 29765814 -119017658 + GC_rich Low_complexity Low_complexity 1 30 0 608 268 73 29 chr11 29766466 29766712 -119016760 - MLT1L LTR MaLR -2 613 357 245 186 0 43 chr11 29767695 29767765 -119015707 + T-rich Low_complexity Low_complexity 3 69 0 327 256 122 16 chr11 29767780 29768034 -119015438 + L1M4 LINE L1 2978 3258 -2888 186 189 0 0 chr11 29769012 29769049 -119014423 + (AACTG)n Simple_repeat Simple_repeat 4 40 0 390 319 25 6 chr11 29769447 29769607 -119013865 - MIR SINE MIR -27 235 73 706 262 45 41 chr11 29770143 29770364 -119013108 + MIR SINE MIR 31 252 -10 21 0 0 0 chr11 29772615 29772636 -119010836 + AT_rich Low_complexity Low_complexity 1 21 0 399 246 93 41 chr11 29772700 29772951 -119010521 - MLT1J LTR MaLR -233 217 1 373 305 48 18 chr11 29772977 29773144 -119010328 + L2 LINE L2 3115 3286 -27 1697 223 31 0 chr11 29773474 29773949 -119009523 - L1ME1 LINE L1 -3 6163 5539 1995 102 25 0 chr11 29773956 29774262 -119009210 - AluY SINE Alu 0 313 1 187 381 82 15 chr11 29774276 29774410 -119009062 + L2 LINE L2 2942 3084 -188 476 335 27 11 chr11 29775332 29775595 -119007877 - L1ME LINE L1 -359 5762 5496 758 297 13 17 chr11 29776495 29776731 -119006741 - MIR SINE MIR -3 259 25 321 167 19 0 chr11 29776872 29776926 -119006546 - MER45A DNA AcHobo 0 178 124 * 1339 295 64 102 chr11 29776922 29777579 -119005893 - MER45C DNA AcHobo -321 632 1 230 332 102 37 chr11 29777675 29777919 -119005553 + MIR SINE MIR 2 261 -1 251 149 0 45 chr11 29778042 29778109 -119005363 + L1MC4 LINE L1 6640 6703 -1339 245 221 0 53 chr11 29778143 29778238 -119005234 - L1MC4 LINE L1 -1339 6703 6614 278 167 17 0 chr11 29778239 29778299 -119005173 + (TA)n Simple_repeat Simple_repeat 1 61 0 526 325 95 9 chr11 29778299 29778530 -119004942 - MIR SINE MIR -11 251 1 245 261 140 70 chr11 29778539 29778696 -119004776 - MER5B DNA MER1_type -7 171 4 200 270 99 54 chr11 29778697 29778808 -119004664 + MER5B DNA MER1_type 15 130 -48 52 64 0 0 chr11 29779586 29779680 -119003792 + AT_rich Low_complexity Low_complexity 1 94 0 388 351 91 13 chr11 29779895 29780126 -119003346 + MIR SINE MIR 14 262 0 21 36 0 0 chr11 29783503 29783531 -118999941 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr11 29783631 29783654 -118999818 + AT_rich Low_complexity Low_complexity 1 23 0 219 369 94 28 chr11 29783930 29784282 -118999190 - L2 LINE L2 -694 2620 2246 312 313 49 49 chr11 29784824 29784968 -118998504 - MIR SINE MIR -70 192 49 183 200 50 0 chr11 29785051 29785091 -118998381 + MIR3 SINE MIR 165 206 -2 337 188 14 43 chr11 29785928 29785997 -118997475 + MER5A DNA MER1_type 48 114 -75 244 372 58 13 chr11 29785989 29786145 -118997327 + MIR SINE MIR 88 250 -12 * 1604 170 21 25 chr11 29786216 29786522 -118996950 + AluJb SINE Alu 1 305 0 210 208 0 0 chr11 29787213 29787266 -118996206 + (ATG)n Simple_repeat Simple_repeat 2 54 0 708 269 143 27 chr11 29787299 29787600 -118995872 + L2 LINE L2 2180 2515 -799 239 368 60 26 chr11 29787986 29788103 -118995369 - L2 LINE L2 -13 3259 3139 242 175 193 0 chr11 29788788 29788845 -118994627 - L2 LINE L2 -5 3308 3241 199 383 12 0 chr11 29789408 29789489 -118993983 - L2 LINE L2 0 3272 3191 347 363 83 21 chr11 29790713 29790953 -118992519 - MIR SINE MIR 0 262 8 284 342 100 0 chr11 29791890 29792010 -118991462 + L2 LINE L2 3141 3272 0 284 273 138 39 chr11 29792082 29792437 -118991035 - L1ME4a LINE L1 -3 6118 5729 708 127 83 104 chr11 29793312 29793550 -118989922 + AluJb SINE Alu 2 312 0 294 344 54 40 chr11 29794224 29794573 -118988899 - ERVL LTR ERVL -5070 694 341 482 258 54 16 chr11 29794765 29794951 -118988521 + MLT1F1 LTR MaLR 1 193 -374 1999 288 95 48 chr11 29794987 29796062 -118987410 - L1MCc LINE L1 -5134 1289 165 27 29 0 0 chr11 29796062 29796096 -118987376 + AT_rich Low_complexity Low_complexity 1 34 0 246 352 11 0 chr11 29796186 29796277 -118987195 - L3 LINE CR1 -24 1553 1462 7211 198 48 29 chr11 29796280 29797462 -118986010 - L1MC3 LINE L1 -2 7783 6556 291 54 0 0 chr11 29797462 29797499 -118985973 + (TA)n Simple_repeat Simple_repeat 1 37 0 7211 198 48 29 chr11 29797499 29798061 -118985411 - L1MC3 LINE L1 -1229 6556 6006 544 207 115 42 chr11 29798079 29798296 -118985176 - L1MCa LINE L1 -2097 4329 4097 2456 252 42 19 chr11 29798302 29799540 -118983932 - L1MCa LINE L1 -3113 3313 2049 25 0 0 0 chr11 29799624 29799649 -118983823 + AT_rich Low_complexity Low_complexity 1 25 0 961 211 144 20 chr11 29799649 29799930 -118983542 - MLT1A1 LTR MaLR -48 326 1 468 317 34 6 chr11 29799932 29800110 -118983362 - MIR SINE MIR -62 146 5 1865 148 16 0 chr11 29800127 29800432 -118983040 - Tigger2 DNA MER2_type 0 2718 2409 1393 13 0 0 chr11 29800446 29800605 -118982867 - L1HS LINE L1 0 6155 5997 * 4669 15 2 0 chr11 29800604 29801141 -118982331 + L1HS LINE L1 5480 6017 -138 707 295 40 0 chr11 29801281 29801481 -118981991 + MER58A DNA MER1_type 2 209 -15 660 193 75 37 chr11 29801501 29801688 -118981784 + MLT1F LTR MaLR 338 531 -11 453 278 153 91 chr11 29801829 29802445 -118981027 - LTR50 LTR ERVL 0 795 142 2155 126 0 10 chr11 29802445 29802755 -118980717 - AluSq SINE Alu -6 307 1 752 211 0 7 chr11 29803048 29803195 -118980277 + FRAM SINE Alu 28 173 -3 4572 170 17 14 chr11 29803654 29805302 -118978170 + L1MA8 LINE L1 4461 6260 -31 29 60 0 0 chr11 29805353 29805403 -118978069 + AT_rich Low_complexity Low_complexity 1 50 0 955 105 0 0 chr11 29805483 29805616 -118977856 - THE1C LTR MaLR -1 374 242 2348 146 15 33 chr11 29805616 29806197 -118977275 - L1MA8 LINE L1 -118 6173 5455 1242 128 20 0 chr11 29806201 29806396 -118977076 - THE1C LTR MaLR -176 199 1 213 385 33 0 chr11 29806396 29806487 -118976985 - L2 LINE L2 -45 3227 3134 637 176 118 6 chr11 29806519 29806689 -118976783 + MER53 DNA DNA 1 189 0 548 340 43 13 chr11 29807388 29807620 -118975852 - MIR SINE MIR -14 248 10 496 279 221 0 chr11 29807656 29807828 -118975644 - MIR SINE MIR -41 221 12 272 297 81 36 chr11 29807837 29807948 -118975524 - MIR SINE MIR -57 151 36 347 318 34 0 chr11 29808413 29808561 -118974911 - MER103 DNA DNA -3 163 11 299 244 26 0 chr11 29808694 29808772 -118974700 - MER5A DNA MER1_type -83 106 27 224 268 103 21 chr11 29809191 29809288 -118974184 - MIR SINE MIR -74 188 84 2616 233 52 10 chr11 29809647 29810441 -118973031 + L1MD2 LINE L1 4034 4860 -1286 3161 201 46 48 chr11 29810455 29811325 -118972147 - L1MB7 LINE L1 0 6184 5317 246 32 0 0 chr11 29811364 29811395 -118972077 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 7829 16 0 0 chr11 29811411 29812976 -118970496 - L1PA2 LINE L1 0 6155 4591 6451 31 0 0 chr11 29812976 29813755 -118969717 + L1P LINE L1 1786 2564 -3582 1218 215 56 20 chr11 29813754 29814145 -118969327 - L1MB7 LINE L1 -815 5331 4927 * 4313 224 48 21 chr11 29814182 29815609 -118967863 + L1MD2 LINE L1 4893 6359 0 508 339 16 5 chr11 29815782 29815968 -118967504 + L2 LINE L2 2658 2845 -469 1421 285 71 32 chr11 29815986 29816510 -118966962 - MLT1E LTR MaLR -2 591 36 249 243 57 14 chr11 29816893 29816963 -118966509 - MIR SINE MIR -111 151 79 325 329 19 7 chr11 29817247 29817352 -118966120 + GA-rich Low_complexity Low_complexity 2 111 -47 1728 150 32 42 chr11 29817352 29817731 -118965741 + THE1C LTR MaLR 1 375 0 325 329 19 7 chr11 29817731 29817780 -118965692 + GA-rich Low_complexity Low_complexity 111 158 0 377 295 50 14 chr11 29817996 29818135 -118965337 - MIR SINE MIR -56 206 63 489 314 40 45 chr11 29819232 29819455 -118964017 + MIR SINE MIR 21 242 -20 654 251 66 43 chr11 29819833 29820044 -118963428 + MER20 DNA MER1_type 4 219 0 303 291 73 0 chr11 29820149 29820259 -118963213 + L3b LINE CR1 1267 1384 -199 746 118 83 104 chr11 29820552 29820790 -118962682 - AluJb SINE Alu 0 312 2 267 290 130 31 chr11 29821666 29822021 -118961451 + L1ME4a LINE L1 5729 6118 -3 302 333 100 0 chr11 29822093 29822213 -118961259 - L2 LINE L2 0 3272 3141 347 363 83 21 chr11 29823150 29823390 -118960082 + MIR SINE MIR 8 262 0 199 383 12 0 chr11 29824614 29824695 -118958777 + L2 LINE L2 3191 3272 0 242 175 193 0 chr11 29825256 29825313 -118958159 + L2 LINE L2 3241 3308 -5 239 368 60 26 chr11 29825998 29826115 -118957357 + L2 LINE L2 3139 3259 -13 713 269 143 27 chr11 29826501 29826802 -118956670 - L2 LINE L2 -799 2515 2180 210 208 0 0 chr11 29826835 29826888 -118956584 + (CAT)n Simple_repeat Simple_repeat 2 54 0 2166 154 30 43 chr11 29827459 29827870 -118955602 + L1MA9 LINE L1 5858 6264 -48 1889 198 3 0 chr11 29827870 29828213 -118955259 - MER7A DNA MER2_type 0 346 5 2166 154 30 43 chr11 29828213 29828262 -118955210 + L1MA9 LINE L1 6264 6312 0 21 0 0 0 chr11 29829366 29829387 -118954085 + AT_rich Low_complexity Low_complexity 1 21 0 197 309 73 0 chr11 29829788 29829843 -118953629 - L2 LINE L2 -48 3224 3166 6341 31 0 0 chr11 29830271 29831020 -118952452 - L1PA4 LINE L1 -6 6149 5401 5268 29 2 0 chr11 29831017 29831644 -118951828 + L1P LINE L1 3587 4214 -1932 * 289 359 47 9 chr11 29831938 29832044 -118951428 - L2 LINE L2 -9 3304 3195 642 61 0 0 chr11 29832166 29832248 -118951224 - L1PA5 LINE L1 -163 5991 5910 266 73 0 0 chr11 29832243 29832284 -118951188 + L1PA6 LINE L1 6114 6154 0 * 23 68 0 0 chr11 29832299 29832343 -118951129 + AT_rich Low_complexity Low_complexity 1 44 0 252 0 0 0 chr11 29832775 29832803 -118950669 + (TG)n Simple_repeat Simple_repeat 2 29 0 332 354 31 0 chr11 29832996 29833126 -118950346 - MER94 DNA DNA 0 134 1 397 267 35 43 chr11 29833537 29833653 -118949819 + MIR SINE MIR 35 149 -59 229 349 0 0 chr11 29834196 29834279 -118949193 - MIR SINE MIR -109 153 71 265 382 14 14 chr11 29834787 29834931 -118948541 + MIR3 SINE MIR 65 208 0 301 355 95 12 chr11 29835282 29835524 -118947948 - MLT1K LTR MaLR -166 422 161 487 251 153 18 chr11 29835648 29835811 -118947661 + L2 LINE L2 3108 3292 -21 213 333 107 38 chr11 29835813 29835972 -118947500 - MIR SINE MIR -86 176 7 191 295 27 87 chr11 29836003 29836152 -118947320 + MIR SINE MIR 66 205 -57 180 206 0 0 chr11 29838255 29838289 -118945183 + L2 LINE L2 3183 3216 -56 951 71 0 0 chr11 29840181 29840308 -118943164 + AluY SINE Alu 185 311 0 238 176 231 33 chr11 29840664 29840755 -118942717 + MIR SINE MIR 98 206 -56 296 312 128 0 chr11 29841232 29841373 -118942099 + MIR SINE MIR 46 204 -58 225 154 0 0 chr11 29841373 29841412 -118942060 + (CA)n Simple_repeat Simple_repeat 1 39 0 2166 126 0 3 chr11 29842205 29842515 -118940957 - AluSq SINE Alu -4 309 1 372 290 37 37 chr11 29842611 29842773 -118940699 + MIR SINE MIR 47 208 -54 181 293 60 43 chr11 29843214 29843330 -118940142 + L2 LINE L2 2925 3042 -230 226 362 78 28 chr11 29843542 29843683 -118939789 + MLT1J LTR MaLR 70 217 -294 407 285 38 19 chr11 29843745 29843903 -118939569 + MLT1J LTR MaLR 313 473 -38 411 369 124 9 chr11 29844185 29844516 -118938956 + L2 LINE L2 2945 3313 0 242 116 23 0 chr11 29844516 29844559 -118938913 + GA-rich Low_complexity Low_complexity 3 46 0 1511 278 129 30 chr11 29845209 29845713 -118937759 + L2 LINE L2 1958 2410 -904 13537 133 32 39 chr11 29845713 29846049 -118937423 + Tigger1 DNA MER2_type 2 339 -2079 207 0 0 0 chr11 29846049 29846072 -118937400 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 13537 133 32 39 chr11 29846072 29847536 -118935936 + Tigger1 DNA MER2_type 339 1783 -635 2006 138 3 0 chr11 29847536 29847833 -118935639 - AluSx SINE Alu -12 300 3 13537 133 32 39 chr11 29847833 29848465 -118935007 + Tigger1 DNA MER2_type 1783 2418 0 1511 278 129 30 chr11 29848465 29848633 -118934839 + L2 LINE L2 2410 2697 -617 995 262 88 94 chr11 29848691 29848819 -118934653 + L2 LINE L2 2579 2706 -607 777 232 6 17 chr11 29848819 29848996 -118934476 - FAM SINE Alu 0 175 1 995 262 88 94 chr11 29848996 29849613 -118933859 + L2 LINE L2 2706 3311 -2 3423 206 68 28 chr11 29849811 29850628 -118932844 - MER21B LTR ERV1 -1 862 13 21 57 0 0 chr11 29850708 29850743 -118932729 + AT_rich Low_complexity Low_complexity 1 35 0 703 189 16 0 chr11 29850822 29850949 -118932523 + AluJo SINE Alu 1 129 -183 239 67 50 17 chr11 29850951 29851011 -118932461 + (TA)n Simple_repeat Simple_repeat 2 63 0 974 221 0 0 chr11 29851015 29851196 -118932276 + AluJo SINE Alu 132 312 0 360 307 126 12 chr11 29851196 29851450 -118932022 + L1ME LINE L1 4407 4689 -1457 327 292 153 14 chr11 29851880 29852096 -118931376 + L1ME LINE L1 5260 5505 -657 658 349 84 8 chr11 29853048 29853429 -118930043 - L2 LINE L2 0 3313 2904 256 278 21 21 chr11 29853559 29853656 -118929816 - L2 LINE L2 -420 2894 2798 21 0 0 0 chr11 29854651 29854672 -118928800 + AT_rich Low_complexity Low_complexity 1 21 0 481 308 54 58 chr11 29855141 29855563 -118927909 + MLT1I LTR MaLR 1 409 0 405 0 0 0 chr11 29857101 29857146 -118926326 + (TC)n Simple_repeat Simple_repeat 2 46 0 288 0 0 0 chr11 29857145 29857177 -118926295 + (TA)n Simple_repeat Simple_repeat 1 32 0 * 397 370 114 30 chr11 29857404 29857666 -118925806 + L2 LINE L2 2987 3270 -2 323 327 75 38 chr11 29857772 29858090 -118925382 + L2 LINE L2 2921 3250 -63 465 149 64 53 chr11 29858337 29858431 -118925041 - LTR65 LTR ERV1 -274 395 301 187 324 38 48 chr11 29858938 29859043 -118924429 + MIR SINE MIR 41 144 -118 487 222 97 40 chr11 29859059 29859235 -118924237 + MIR SINE MIR 3 188 -74 180 0 0 0 chr11 29859265 29859285 -118924187 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 189 0 0 0 chr11 29859284 29859305 -118924167 + (GA)n Simple_repeat Simple_repeat 2 22 0 240 356 30 20 chr11 29859838 29859939 -118923533 + MIR3 SINE MIR 93 194 -14 1632 145 55 3 chr11 29860020 29860310 -118923162 - MER7A DNA MER2_type -42 304 2 243 0 0 0 chr11 29860603 29860630 -118922842 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 306 317 25 8 chr11 29861217 29861337 -118922135 + MIR SINE MIR 101 222 -40 362 274 33 24 chr11 29862429 29862570 -118920902 - MIR SINE MIR -62 146 10 195 298 18 18 chr11 29862713 29862770 -118920702 - L2 LINE L2 -18 3295 3239 244 385 19 19 chr11 29864625 29864729 -118918743 + L2 LINE L2 3128 3231 -41 1881 169 0 3 chr11 29865179 29865510 -118917962 + L1MA7 LINE L1 5460 5789 -502 21 0 0 0 chr11 29865510 29865531 -118917941 + AT_rich Low_complexity Low_complexity 1 21 0 2098 173 60 31 chr11 29865639 29866126 -118917346 + L1MA7 LINE L1 5787 6287 -4 1212 190 0 0 chr11 29866130 29866325 -118917147 + AluSx SINE Alu 1 195 -117 310 345 59 8 chr11 29866565 29866684 -118916788 - MIR SINE MIR -115 147 23 2350 97 0 0 chr11 29867909 29868207 -118915265 - AluSg SINE Alu -12 298 1 290 122 27 135 chr11 29868351 29868425 -118915047 - MER116 DNA Mariner -10 70 5 279 0 0 0 chr11 29869452 29869483 -118913989 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 435 328 166 39 chr11 29869509 29870004 -118913468 - L2 LINE L2 -61 3252 2660 2480 54 0 3 chr11 29870004 29870300 -118913172 + AluY SINE Alu 1 295 -16 435 328 166 39 chr11 29870300 29870383 -118913089 - L2 LINE L2 -653 2660 2589 835 243 21 21 chr11 29872297 29872486 -118910986 - MER5A DNA MER1_type 0 189 1 2008 137 0 0 chr11 29875835 29876119 -118907353 - AluSx SINE Alu -28 284 1 1410 199 16 58 chr11 29877360 29877808 -118905664 - MER67D LTR ERV1 -4 510 3 337 313 134 34 chr11 29878065 29878244 -118905228 + MIR SINE MIR 54 250 -12 663 283 40 6 chr11 29879620 29879797 -118903675 + MIR SINE MIR 24 206 -56 517 146 39 10 chr11 29880190 29880293 -118903179 + MLT2B2 LTR ERVL 1 106 -409 375 191 9 19 chr11 29880297 29880402 -118903070 + (TA)n Simple_repeat Simple_repeat 2 105 0 204 40 0 0 chr11 29880402 29880427 -118903045 + (GA)n Simple_repeat Simple_repeat 2 26 0 330 148 0 0 chr11 29880431 29880485 -118902987 + MLT2B1 LTR ERVL 467 520 0 2972 109 12 0 chr11 29880859 29881282 -118902190 - MSTA LTR MaLR 0 428 1 2574 122 0 11 chr11 29881847 29882215 -118901257 - THE1B LTR MaLR 0 364 1 1481 193 15 4 chr11 29883607 29883872 -118899600 - MLT1A1 LTR MaLR 0 365 98 273 29 0 0 chr11 29884083 29884117 -118899355 + (TA)n Simple_repeat Simple_repeat 2 35 0 379 331 39 8 chr11 29884494 29884624 -118898848 - MIR SINE MIR -97 165 32 184 304 0 0 chr11 29885143 29885189 -118898283 + MIR SINE MIR 74 119 -89 413 286 6 10 chr11 29885639 29885770 -118897702 - MIR SINE MIR -63 145 22 309 346 0 10 chr11 29886500 29886601 -118896871 - MIR SINE MIR -6 256 157 513 311 97 15 chr11 29886637 29886843 -118896629 - MIR SINE MIR -14 248 26 180 0 0 0 chr11 29886962 29886982 -118896490 + (TA)n Simple_repeat Simple_repeat 2 21 0 1861 159 121 21 chr11 29887121 29887510 -118895962 + MSTA LTR MaLR 1 428 0 410 324 34 21 chr11 29887556 29887794 -118895678 - L1ME LINE L1 -369 5752 5512 621 195 8 0 chr11 29887802 29887920 -118895552 + MLT1A1 LTR MaLR 247 365 0 238 287 106 11 chr11 29888482 29888576 -118894896 - MER103 DNA DNA -57 109 7 1521 120 28 0 chr11 29888911 29889161 -118894311 + L1MA8 LINE L1 6024 6280 -11 860 138 0 36 chr11 29889524 29889662 -118893810 + FLAM_C SINE Alu 1 133 -10 21 82 0 0 chr11 29889806 29889855 -118893617 + AT_rich Low_complexity Low_complexity 1 49 0 329 277 10 40 chr11 29890715 29890816 -118892656 + MIR SINE MIR 71 168 -94 247 302 174 5 chr11 29891634 29891846 -118891626 + L1ME LINE L1 5566 5813 -308 870 312 58 11 chr11 29893360 29893719 -118889753 - L2 LINE L2 0 3313 2938 211 329 91 49 chr11 29894499 29894642 -118888830 - L2 LINE L2 0 3313 3165 358 287 63 21 chr11 29894657 29894800 -118888672 + MIR SINE MIR 104 252 -10 794 203 26 42 chr11 29894841 29895033 -118888439 - MER5A DNA MER1_type 0 189 1 217 382 114 32 chr11 29895323 29895446 -118888026 + L2 LINE L2 3129 3261 -11 810 243 29 0 chr11 29895814 29895987 -118887485 + MER45A DNA AcHobo 1 178 0 185 343 162 0 chr11 29896093 29896198 -118887274 + MIR3 SINE MIR 82 203 -5 309 301 146 50 chr11 29897301 29897500 -118885972 - MIR SINE MIR -41 221 4 16334 53 3 2 chr11 29897905 29900761 -118882711 - L1PA5 LINE L1 -1 6153 3302 485 202 11 0 chr11 29900900 29900994 -118882478 + LTR67 LTR ERVL 449 543 -14 322 284 120 48 chr11 29901616 29901867 -118881605 + L2 LINE L2 2597 2864 -450 34 24 0 0 chr11 29902365 29902406 -118881066 + AT_rich Low_complexity Low_complexity 1 41 0 342 335 40 23 chr11 29902442 29902618 -118880854 - MIR SINE MIR -71 191 13 1104 191 48 75 chr11 29902678 29903050 -118880422 - L1MB8 LINE L1 0 6178 5817 545 275 41 17 chr11 29903327 29903656 -118879816 + MER115 DNA AcHobo 316 692 -1 7212 40 2 10 chr11 29904620 29905522 -118877950 - L1PA5 LINE L1 -1 6153 5259 215 158 0 26 chr11 29905607 29905645 -118877827 - MIR SINE MIR -147 115 79 281 230 109 52 chr11 29906895 29907055 -118876417 - MIR3 SINE MIR -59 149 3 423 232 18 9 chr11 29907138 29907250 -118876222 - MER117 DNA MER1_type -84 113 1 492 227 0 0 chr11 29907604 29907723 -118875749 + GA-rich Low_complexity Low_complexity 1 119 0 315 303 103 50 chr11 29907731 29907992 -118875480 + L2 LINE L2 3038 3312 -1 198 353 86 17 chr11 29908532 29908648 -118874824 + MIR SINE MIR 20 143 -119 28 0 0 0 chr11 29910083 29910111 -118873361 + AT_rich Low_complexity Low_complexity 1 28 0 531 216 0 0 chr11 29911084 29911186 -118872286 + MER7A DNA MER2_type 2 101 -245 23110 42 1 3 chr11 29911186 29914867 -118868605 - L1PA4 LINE L1 -3 6152 2471 1492 216 37 58 chr11 29914867 29915382 -118868090 - L1M4 LINE L1 -1320 5637 5134 2579 271 93 46 chr11 29915401 29917645 -118865827 - L1M4 LINE L1 -3853 3104 742 375 291 91 17 chr11 29917639 29917814 -118865658 - L1M4 LINE L1 -6670 189 2 * 200 143 65 26 chr11 29917866 29917943 -118865529 + (TA)n Simple_repeat Simple_repeat 1 80 0 24 96 0 0 chr11 29917973 29918046 -118865426 + AT_rich Low_complexity Low_complexity 1 73 0 399 299 87 68 chr11 29918047 29918682 -118864790 - L1MEc LINE L1 -1708 4507 3861 449 208 0 104 chr11 29918922 29919066 -118864406 - L2 LINE L2 -1270 2044 1916 548 315 112 70 chr11 29919102 29919575 -118863897 + L2 LINE L2 2003 2495 -819 474 301 132 25 chr11 29919629 29920024 -118863448 - L1MEc LINE L1 -2887 3328 2892 2404 80 0 0 chr11 29921510 29921821 -118861651 - AluY SINE Alu 0 311 1 4629 32 0 0 chr11 29921835 29922388 -118861084 + L1PA4 LINE L1 5603 6155 0 21 36 0 0 chr11 29922751 29922779 -118860693 + AT_rich Low_complexity Low_complexity 1 28 0 545 261 92 19 chr11 29922819 29923026 -118860446 + MIR SINE MIR 37 258 -4 300 336 18 0 chr11 29923274 29923387 -118860085 - MIR3 SINE MIR -7 201 87 703 211 77 5 chr11 29923454 29923648 -118859824 - L1MC3 LINE L1 -18 7767 7560 1881 259 137 7 chr11 29923741 29924471 -118859001 + L1M4c LINE L1 969 1793 -4591 200 216 0 0 chr11 29924538 29924575 -118858897 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 2161 217 42 6 chr11 29924576 29925079 -118858393 + L1MB7 LINE L1 5644 6164 -20 1081 230 73 14 chr11 29925148 29925505 -118857967 + L1ME2 LINE L1 5768 6145 -19 26 50 0 0 chr11 29926125 29926165 -118857307 + AT_rich Low_complexity Low_complexity 1 40 0 273 349 46 9 chr11 29926201 29926310 -118857162 - MIR SINE MIR -139 123 11 211 392 7 28 chr11 29926334 29926477 -118856995 - MIR3 SINE MIR -62 146 7 249 305 12 0 chr11 29926954 29927036 -118856436 + MIR SINE MIR 172 254 -8 9213 28 2 0 chr11 29927213 29929079 -118854393 - L1PA4 LINE L1 -3 6152 4285 40 49 0 0 chr11 29929466 29929527 -118853945 + AT_rich Low_complexity Low_complexity 1 61 0 215 110 93 17 chr11 29929639 29929757 -118853715 + (TA)n Simple_repeat Simple_repeat 2 128 0 411 222 11 11 chr11 29929789 29929969 -118853503 + (TA)n Simple_repeat Simple_repeat 1 180 0 483 253 82 0 chr11 29930157 29930327 -118853145 - L1MEc LINE L1 -3641 2574 2391 1843 240 125 15 chr11 29930353 29930873 -118852599 + MLT1E1 LTR MaLR 58 634 -20 313 282 54 54 chr11 29930892 29931133 -118852339 - L1MEc LINE L1 -3816 2399 2183 230 314 117 38 chr11 29931222 29931694 -118851778 - L1MEc LINE L1 -4542 1854 1346 3554 133 11 0 chr11 29931828 29932386 -118851086 - L1PA16 LINE L1 -9 6157 5594 230 272 148 0 chr11 29932641 29932722 -118850750 - L2 LINE L2 0 3313 3221 22 35 0 0 chr11 29933094 29933123 -118850349 + AT_rich Low_complexity Low_complexity 1 29 0 295 282 128 8 chr11 29933332 29933449 -118850023 - MIR SINE MIR -59 203 73 550 191 25 157 chr11 29933537 29933772 -118849700 - L2 LINE L2 0 3313 3110 1962 186 3 19 chr11 29934957 29935328 -118848144 - MLT1A1 LTR MaLR 0 365 1 1459 109 19 0 chr11 29935652 29935863 -118847609 + L1PA10 LINE L1 5938 6152 -16 1203 197 119 44 chr11 29936429 29936790 -118846682 - MER89 LTR ERV1 0 559 172 278 262 24 0 chr11 29937130 29937214 -118846258 + CT-rich Low_complexity Low_complexity 1 86 0 387 295 195 54 chr11 29939159 29939682 -118843790 + L2 LINE L2 2681 3291 -22 831 200 19 12 chr11 29939682 29939842 -118843630 - Tigger3(Golem) DNA MER2_type -1 3028 2868 294 160 0 0 chr11 29939837 29939887 -118843585 - Tigger3(Golem) DNA MER2_type -89 2940 2891 * 365 97 0 97 chr11 29939890 29939962 -118843510 - Tigger3(Golem) DNA MER2_type -96 2933 2869 349 111 0 97 chr11 29939980 29940052 -118843420 - Tigger3(Golem) DNA MER2_type -96 2933 2869 322 200 0 31 chr11 29940047 29940112 -118843360 - Tigger3(Golem) DNA MER2_type -89 2940 2878 * 303 152 25 89 chr11 29940094 29940173 -118843299 - Tigger3(Golem) DNA MER2_type -79 2950 2877 * 347 183 0 81 chr11 29940166 29940292 -118843180 - Tigger3(Golem) DNA MER2_type -74 2955 2869 307 171 0 98 chr11 29940300 29940382 -118843090 - Tigger3(Golem) DNA MER2_type -88 2941 2868 * 393 94 71 82 chr11 29940379 29940464 -118843008 - Tigger3(Golem) DNA MER2_type -78 2951 2868 250 185 93 0 chr11 29940479 29940533 -118842939 - Tigger3(Golem) DNA MER2_type -84 2945 2887 304 189 24 52 chr11 29940533 29940658 -118842814 - Tigger3(Golem) DNA MER2_type -78 2951 2844 279 139 0 0 chr11 29940695 29940738 -118842734 - Tigger3(Golem) DNA MER2_type -97 2932 2890 902 108 89 32 chr11 29940764 29940922 -118842550 - Tigger3(Golem) DNA MER2_type -91 2938 2772 19576 39 5 0 chr11 29940922 29944115 -118839357 + L1PA4 LINE L1 2954 6152 -3 276 206 0 32 chr11 29944133 29944196 -118839276 + L1M4 LINE L1 4810 4870 -1276 1285 195 49 21 chr11 29944203 29944635 -118838837 + L1M4 LINE L1 5104 5555 -619 304 381 44 11 chr11 29944746 29944927 -118838545 - L2 LINE L2 -229 3043 2857 271 91 36 0 chr11 29945614 29945669 -118837803 - LTR66 LTR ERVL -160 450 394 22 88 0 0 chr11 29945681 29945738 -118837734 + AT_rich Low_complexity Low_complexity 1 57 0 342 243 29 0 chr11 29945787 29945927 -118837545 + (TA)n Simple_repeat Simple_repeat 2 145 0 187 343 0 29 chr11 29946966 29947036 -118836436 + MIR SINE MIR 23 90 -118 647 276 133 55 chr11 29947597 29947981 -118835491 - MLT1J1 LTR MaLR 0 446 33 248 356 0 0 chr11 29948007 29948097 -118835375 - MIR SINE MIR -72 190 101 2003 238 39 65 chr11 29949576 29950350 -118833122 - L1ME1 LINE L1 -5 6230 5477 302 0 26 0 chr11 29950365 29950403 -118833069 + (TAGA)n Simple_repeat Simple_repeat 2 40 0 363 239 28 9 chr11 29950407 29950516 -118832956 + L1MA10 LINE L1 6224 6334 0 2714 251 79 14 chr11 29950570 29951548 -118831924 - L1ME1 LINE L1 -1318 4897 3857 325 283 42 30 chr11 29951553 29951719 -118831753 - L1ME1 LINE L1 -2647 3568 3401 * 2848 229 85 42 chr11 29951714 29952693 -118830779 - L1MD2 LINE L1 -2 6357 5338 2080 261 34 26 chr11 29952833 29953672 -118829800 - L1ME1 LINE L1 -2994 3221 2373 252 86 0 0 chr11 29953672 29953707 -118829765 + (TG)n Simple_repeat Simple_repeat 2 36 0 2080 261 34 26 chr11 29953707 29953748 -118829724 - L1ME1 LINE L1 -3842 2373 2334 1894 99 7 7 chr11 29953797 29954069 -118829403 - AluSc SINE Alu -1 308 37 1330 145 45 22 chr11 29954113 29954382 -118829090 - L1MC2 LINE L1 -4 6340 6066 483 175 269 34 chr11 29954402 29954636 -118828836 - MER4C LTR ERV1 -20 445 157 1369 156 53 47 chr11 29954661 29955000 -118828472 - MER4A LTR ERV1 -323 341 1 1613 174 23 11 chr11 29955002 29955353 -118828119 - L1MC2 LINE L1 -287 6057 5703 1364 277 92 49 chr11 29955369 29956012 -118827460 - L1ME1 LINE L1 -4102 2294 1680 1802 126 79 7 chr11 29956012 29956289 -118827183 - AluSg SINE Alu -13 297 1 1364 277 92 49 chr11 29956289 29957030 -118826442 - L1ME1 LINE L1 -4716 1680 850 610 189 0 0 chr11 29957185 29957291 -118826181 + Tigger3(Golem) DNA MER2_type 2929 3034 0 601 305 76 44 chr11 29957296 29957703 -118825769 - L1ME1 LINE L1 -5900 496 77 297 128 0 0 chr11 29957705 29957752 -118825720 + (TA)n Simple_repeat Simple_repeat 2 48 0 3963 68 0 2 chr11 29957759 29958291 -118825181 - L1PA7 LINE L1 -61 6093 5563 22 35 0 0 chr11 29958335 29958364 -118825108 + AT_rich Low_complexity Low_complexity 1 29 0 731 52 0 0 chr11 29958511 29958608 -118824864 + L1P LINE L1 2 98 -6048 * 9583 55 94 5 chr11 29958602 29959983 -118823489 + L1P LINE L1 617 2120 -4026 2398 206 34 8 chr11 29960083 29960586 -118822886 + MLT2B3 LTR ERVL 10 473 -47 313 167 12 12 chr11 29960587 29960671 -118822801 + (TCTA)n Simple_repeat Simple_repeat 4 87 0 270 311 33 11 chr11 29961021 29961111 -118822361 + L2 LINE L2 3215 3306 -7 218 254 0 0 chr11 29961970 29962025 -118821447 + (CACCAT)n Simple_repeat Simple_repeat 5 59 0 2970 169 11 2 chr11 29962161 29962718 -118820754 + L1MA8 LINE L1 5547 6108 -183 192 97 0 0 chr11 29962831 29962862 -118820610 + (CA)n Simple_repeat Simple_repeat 2 32 0 21 0 0 0 chr11 29963418 29963439 -118820033 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 29963570 29963591 -118819881 + AT_rich Low_complexity Low_complexity 1 21 0 775 134 21 14 chr11 29965361 29965503 -118817969 - MER4D LTR ERV1 0 903 761 3481 187 7 22 chr11 29965587 29966316 -118817156 - MER4D LTR ERV1 -179 724 7 312 388 27 27 chr11 29966409 29966633 -118816839 - L2 LINE L2 -243 3070 2847 349 243 99 0 chr11 29966645 29966756 -118816716 - MER94 DNA DNA -9 125 4 1019 333 134 19 chr11 29967410 29968035 -118815437 - L2 LINE L2 -509 2805 2109 1942 133 42 48 chr11 29968391 29968768 -118814704 - THE1C LTR MaLR 0 375 1 476 264 135 0 chr11 29968769 29968932 -118814540 + L2 LINE L2 3126 3310 -3 368 232 60 13 chr11 29970993 29971144 -118812328 + MER103 DNA DNA 9 166 0 180 321 0 18 chr11 29971440 29971496 -118811976 + L2 LINE L2 2980 3034 -238 381 278 80 46 chr11 29971500 29971651 -118811821 - MIR3 SINE MIR -3 205 50 587 350 71 43 chr11 29972466 29973003 -118810469 + L2 LINE L2 2245 2796 -518 1891 213 86 13 chr11 29973328 29973792 -118809680 - MER77 LTR ERV1 -9 596 99 304 367 50 0 chr11 29973858 29973978 -118809494 + L2 LINE L2 3146 3271 -1 3409 98 15 26 chr11 29974477 29975019 -118808453 - L1PA8A LINE L1 -1 6445 5910 294 286 0 0 chr11 29975024 29975129 -118808343 + C-rich Low_complexity Low_complexity 1 105 0 23072 155 16 15 chr11 29975229 29980746 -118802726 - L1PA8A LINE L1 -877 5584 3 277 301 12 110 chr11 29981004 29981099 -118802373 + L2 LINE L2 2692 2764 -550 2287 118 0 0 chr11 29981099 29981404 -118802068 + AluY SINE Alu 1 305 -6 277 301 12 110 chr11 29981404 29981481 -118801991 + L2 LINE L2 2764 2847 -467 181 0 33 33 chr11 29981496 29981526 -118801946 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 250 261 163 13 chr11 29981533 29981686 -118801786 - AluYb8 SINE Alu -27 281 106 551 268 14 0 chr11 29982006 29982148 -118801324 - MER63A DNA MER1_type -3 207 64 1948 97 54 0 chr11 29982764 29983023 -118800449 + AluSg SINE Alu 20 292 -18 4030 191 18 23 chr11 29983533 29984428 -118799044 + L1P LINE L1 4202 5093 -1053 2056 138 51 25 chr11 29984428 29984783 -118798689 - THE1B LTR MaLR 0 364 1 4030 191 18 23 chr11 29984783 29984876 -118798596 + L1P LINE L1 5093 5185 -961 216 67 0 0 chr11 29985309 29985339 -118798133 + (CA)n Simple_repeat Simple_repeat 1 30 0 1523 188 4 4 chr11 29986582 29986848 -118796624 - AluSx SINE Alu -46 266 1 385 237 17 7 chr11 29988030 29988151 -118795321 - AluS SINE Alu -208 95 1 3174 190 24 5 chr11 29988153 29988791 -118794681 - THE1B-int LTR MaLR -304 1347 698 313 321 52 72 chr11 29989377 29989667 -118793805 - L2 LINE L2 -765 2549 2266 666 43 0 43 chr11 29991960 29992054 -118791418 + LTR13 LTR ERVK 1 90 -917 862 163 43 5 chr11 29992335 29992519 -118790953 - L1MA7 LINE L1 -265 6026 5836 733 293 79 19 chr11 29993446 29993862 -118789610 + Tigger8 DNA MER2_type 39 479 -187 6714 111 16 6 chr11 29994188 29995852 -118787620 - L1PA8A LINE L1 -220 5911 4239 1061 132 0 117 chr11 29995952 29996165 -118787307 - AluSg SINE Alu -122 188 1 420 288 44 12 chr11 29996172 29996332 -118787140 + L2 LINE L2 3119 3283 -30 972 299 110 36 chr11 29998249 29998655 -118784817 + L2 LINE L2 2806 3253 -60 350 42 21 0 chr11 29998655 29998703 -118784769 + (TG)n Simple_repeat Simple_repeat 2 50 0 972 299 110 36 chr11 29998703 29998768 -118784704 + L2 LINE L2 3253 3312 -1 1142 247 184 43 chr11 29998806 29999312 -118784160 + MLT1G1 LTR MaLR 1 577 -18 1425 180 46 3 chr11 29999395 29999679 -118783793 + MER46B DNA MER2_type 63 233 -3 3000 162 30 25 chr11 29999837 30000466 -118783006 + L1MB3 LINE L1 5551 6182 -1 21 0 0 0 chr11 30000655 30000676 -118782796 + AT_rich Low_complexity Low_complexity 1 21 0 210 208 0 0 chr11 30001003 30001051 -118782421 + (TA)n Simple_repeat Simple_repeat 2 49 0 281 26 26 0 chr11 30001151 30001189 -118782283 + (CA)n Simple_repeat Simple_repeat 2 40 0 2074 173 84 0 chr11 30002577 30002970 -118780502 + MSTB LTR MaLR 1 426 0 227 268 187 43 chr11 30003611 30003846 -118779626 + L2 LINE L2 2487 2755 -559 199 347 32 0 chr11 30003955 30004050 -118779422 + L2 LINE L2 2180 2277 -1037 1096 274 88 25 chr11 30004147 30004718 -118778754 + L2 LINE L2 2710 3313 0 224 342 34 26 chr11 30004735 30004852 -118778620 + L2 LINE L2 2870 2987 -285 331 263 138 67 chr11 30005793 30006017 -118777455 + L1ME4a LINE L1 4017 4256 -1890 564 203 24 50 chr11 30006164 30006349 -118777123 - L1ME LINE L1 -656 5508 5329 43 47 0 0 chr11 30006496 30006560 -118776912 + GC_rich Low_complexity Low_complexity 1 64 0 213 39 0 0 chr11 30006790 30006816 -118776656 + (TG)n Simple_repeat Simple_repeat 2 27 0 243 125 0 0 chr11 30009007 30009047 -118774425 + (CA)n Simple_repeat Simple_repeat 1 40 0 404 292 57 67 chr11 30010668 30011072 -118772400 + L1ME4a LINE L1 5496 5895 -226 35 63 0 0 chr11 30011220 30011283 -118772189 + AT_rich Low_complexity Low_complexity 1 63 0 1570 196 16 53 chr11 30012100 30012477 -118770995 - MLT1A1 LTR MaLR 0 365 3 223 140 70 0 chr11 30014479 30014536 -118768936 + (TATATG)n Simple_repeat Simple_repeat 2 62 0 201 154 0 0 chr11 30014583 30014622 -118768850 + (CA)n Simple_repeat Simple_repeat 2 40 0 201 236 36 0 chr11 30014639 30014694 -118768778 + (TAGA)n Simple_repeat Simple_repeat 3 59 0 1355 191 57 14 chr11 30014694 30014976 -118768496 - MLT2C1 LTR ERVL -48 349 56 1486 250 71 62 chr11 30015468 30016054 -118767418 - MLT1G LTR MaLR 0 590 1 186 211 0 26 chr11 30017102 30017140 -118766332 + L2 LINE L2 3220 3256 -16 2020 128 3 0 chr11 30017198 30017539 -118765933 + AluSc SINE Alu 1 309 0 925 159 26 91 chr11 30017613 30017845 -118765627 + MER20 DNA MER1_type 2 218 -1 235 280 7 77 chr11 30018510 30018653 -118764819 + MIR SINE MIR 118 250 -12 1565 175 0 74 chr11 30019316 30019653 -118763819 + AluJo SINE Alu 1 312 0 2337 81 3 3 chr11 30020220 30020528 -118762944 + AluY SINE Alu 1 308 -3 369 109 0 0 chr11 30021567 30021582 -118761890 + (CA)n Simple_repeat Simple_repeat 1 70 0 369 109 0 0 chr11 30021582 30021637 -118761835 + (CA)n Simple_repeat Simple_repeat 2 56 0 182 36 0 36 chr11 30021900 30021928 -118761544 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 2831 35 6 0 chr11 30021928 30022268 -118761204 - L1PA3 LINE L1 -19 6136 5795 252 0 0 0 chr11 30022427 30022455 -118761017 + (TG)n Simple_repeat Simple_repeat 2 29 0 1755 162 7 0 chr11 30022466 30022737 -118760735 - AluJo SINE Alu -37 275 3 236 289 70 26 chr11 30022820 30022934 -118760538 - MLT1L LTR MaLR -116 499 381 207 381 75 14 chr11 30024965 30025112 -118758360 + L2 LINE L2 3117 3272 0 976 282 24 38 chr11 30025288 30025628 -118757844 + MER102b DNA MER1_type 1 335 -6 458 347 6 6 chr11 30026352 30026519 -118756953 - MIR SINE MIR -10 252 86 229 286 105 40 chr11 30026591 30026747 -118756725 - MIR3 SINE MIR -15 193 29 186 209 0 0 chr11 30026814 30026857 -118756615 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 307 291 53 102 chr11 30027790 30028075 -118755397 + L1M2 LINE L1 797 1067 -5782 10660 215 58 52 chr11 30028260 30031011 -118752461 + L1P4 LINE L1 371 3397 -2825 207 0 0 0 chr11 30031011 30031034 -118752438 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 10660 215 58 52 chr11 30031034 30033146 -118750326 + L1P4 LINE L1 3397 5495 -727 277 128 0 0 chr11 30083708 30083747 -118699725 - 5S rRNA rRNA -79 42 4 736 185 104 28 chr11 30083868 30084079 -118699393 - MER33 DNA MER1_type -93 231 5 194 189 0 19 chr11 30084311 30084364 -118699108 + (CATATA)n Simple_repeat Simple_repeat 4 55 0 328 299 28 0 chr11 30084900 30085044 -118698428 - MER103 DNA DNA -11 155 8 639 208 0 8 chr11 30085382 30085507 -118697965 + MLT1A1 LTR MaLR 3 126 -239 1089 190 0 51 chr11 30085845 30086082 -118697390 - AluJb SINE Alu -4 308 84 1712 173 16 16 chr11 30087475 30087787 -118695685 + AluSx SINE Alu 1 312 0 4625 130 12 7 chr11 30087904 30088789 -118694683 - L1PA16 LINE L1 -184 5982 5097 186 275 113 12 chr11 30089180 30089260 -118694212 + MIR SINE MIR 120 207 -55 23 33 0 0 chr11 30089265 30089295 -118694177 + AT_rich Low_complexity Low_complexity 1 30 0 418 311 8 98 chr11 30089960 30090195 -118693277 - L2 LINE L2 -230 3042 2829 28 0 0 0 chr11 30090681 30090709 -118692763 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 30090983 30091005 -118692467 + AT_rich Low_complexity Low_complexity 1 22 0 2208 100 7 7 chr11 30091629 30091938 -118691534 - AluSq SINE Alu -4 309 1 336 303 149 11 chr11 30092835 30093023 -118690449 + MIR SINE MIR 15 228 -34 239 54 27 0 chr11 30093136 30093173 -118690299 + (CA)n Simple_repeat Simple_repeat 1 38 0 378 230 60 0 chr11 30094220 30094320 -118689152 - LTR16C LTR ERVL -1 490 385 259 357 24 0 chr11 30094320 30094404 -118689068 - LTR16C LTR ERVL -270 221 136 361 310 58 41 chr11 30094821 30094992 -118688480 + MIR SINE MIR 15 188 -74 224 303 13 40 chr11 30095065 30095141 -118688331 + L3 LINE CR1 1497 1570 -7 2683 109 23 18 chr11 30095356 30095798 -118687674 - MLT2A1 LTR ERVL 0 444 1 182 321 37 25 chr11 30096209 30096290 -118687182 + L3 LINE CR1 1494 1575 -2 1965 147 7 0 chr11 30096329 30096628 -118686844 + AluSx SINE Alu 5 305 -7 276 368 98 10 chr11 30096789 30096982 -118686490 + MIR SINE MIR 46 255 -7 503 299 27 18 chr11 30097637 30097861 -118685611 - L1ME LINE L1 -340 5781 5556 527 323 132 23 chr11 30097867 30098368 -118685104 + L2 LINE L2 2729 3312 -1 21 36 0 0 chr11 30098586 30098614 -118684858 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr11 30098650 30098673 -118684799 + AT_rich Low_complexity Low_complexity 1 23 0 975 136 17 57 chr11 30099222 30099399 -118684073 + Tigger2a DNA MER2_type 2 171 -263 1790 194 57 16 chr11 30099408 30099795 -118683677 - Tigger2 DNA MER2_type -1 2717 2315 1679 92 66 82 chr11 30099817 30100121 -118683351 - AluY SINE Alu -10 301 3 341 153 0 69 chr11 30100135 30100153 -118683319 - Tigger2 DNA MER2_type -2649 69 51 1428 212 7 26 chr11 30100153 30100455 -118683017 + AluJo SINE Alu 1 296 -16 341 153 0 69 chr11 30100455 30100508 -118682964 - Tigger2 DNA MER2_type -2667 51 3 1330 161 40 12 chr11 30100508 30100756 -118682716 + Tigger2 DNA MER2_type 2464 2718 0 1484 291 39 44 chr11 30101862 30102881 -118680591 - L1M4 LINE L1 -1794 4352 3339 383 306 86 50 chr11 30103123 30103869 -118679603 - L1MEc LINE L1 -4585 1811 1039 552 113 248 30 chr11 30103991 30104124 -118679348 - L1PA13 LINE L1 -1 6162 6001 30 45 0 0 chr11 30104126 30104170 -118679302 + AT_rich Low_complexity Low_complexity 1 44 0 2850 106 25 7 chr11 30104170 30104612 -118678860 - L1PA13 LINE L1 0 6163 5714 2371 126 3 6 chr11 30104635 30104991 -118678481 - THE1A LTR MaLR 0 355 1 11400 98 10 5 chr11 30104991 30106561 -118676911 - THE1A-int LTR MaLR 0 1580 3 2595 99 6 0 chr11 30106563 30106916 -118676556 - THE1A LTR MaLR 0 355 1 9065 187 40 17 chr11 30107374 30113703 -118669769 + L1PB1 LINE L1 31 6866 -1 506 278 4 0 chr11 30114183 30114445 -118669027 + (TA)n Simple_repeat Simple_repeat 1 263 0 12183 212 23 8 chr11 30114662 30118398 -118665074 - L1PA15 LINE L1 -2 6163 2373 23 0 0 0 chr11 30118741 30118764 -118664708 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr11 30118783 30118804 -118664668 + AT_rich Low_complexity Low_complexity 1 21 0 210 298 0 0 chr11 30119227 30119284 -118664188 - MIR3 SINE MIR -1 207 151 271 295 49 0 chr11 30120246 30120307 -118663165 + L2 LINE L2 3201 3264 -8 478 214 31 0 chr11 30120310 30120408 -118663064 - Tigger3b DNA MER2_type -2 1229 1129 5627 140 96 19 chr11 30120489 30120747 -118662725 - Tigger3b DNA MER2_type -1860 1168 931 203 61 30 0 chr11 30120747 30120780 -118662692 + (TGAG)n Simple_repeat Simple_repeat 1 34 0 5627 140 96 19 chr11 30120780 30121603 -118661869 - Tigger3b DNA MER2_type -2097 931 3 246 273 91 32 chr11 30121773 30121927 -118661545 + L2 LINE L2 3149 3311 -2 203 279 106 19 chr11 30121944 30122048 -118661424 + MIR SINE MIR 134 246 -16 421 285 8 41 chr11 30122320 30122443 -118661029 - L2 LINE L2 -3 3269 3151 336 207 17 52 chr11 30123040 30123214 -118660258 + (TA)n Simple_repeat Simple_repeat 1 168 0 747 343 62 82 chr11 30123682 30124776 -118658696 + L2 LINE L2 1990 3078 -194 1633 135 81 4 chr11 30124776 30125059 -118658413 - AluSx SINE Alu 0 307 5 747 343 62 82 chr11 30125059 30125239 -118658233 + L2 LINE L2 3078 3260 -12 771 309 59 38 chr11 30125715 30126131 -118657341 + LTR33 LTR ERVL 12 519 -2 2264 122 34 3 chr11 30126179 30126531 -118656941 - THE1B LTR MaLR -1 363 1 1733 146 18 97 chr11 30126600 30126983 -118656489 - THE1B LTR MaLR -11 353 1 11389 105 4 1 chr11 30126983 30128558 -118654914 - THE1A-int LTR MaLR 0 1580 1 1785 149 8 67 chr11 30128560 30128935 -118654537 - THE1A LTR MaLR -2 353 1 3492 100 0 6 chr11 30129311 30129810 -118653662 - L1PA7 LINE L1 -3 6151 5656 2759 90 11 13 chr11 30129810 30130317 -118653155 + L1PA7 LINE L1 5147 5652 -502 195 312 34 34 chr11 30130493 30130621 -118652851 + L2 LINE L2 2852 2979 -334 201 281 0 12 chr11 30131250 30131332 -118652140 + CT-rich Low_complexity Low_complexity 2 82 0 197 337 11 103 chr11 30132084 30132259 -118651213 + MIR SINE MIR 43 201 -61 7413 104 2 5 chr11 30132983 30134025 -118649447 - L1PA5 LINE L1 -5095 1051 13 22161 51 6 12 chr11 30134027 30139009 -118644463 + L1PA5 LINE L1 1041 6150 -4 207 0 0 0 chr11 30139032 30139055 -118644417 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1574 279 70 7 chr11 30139073 30139507 -118643965 + MER45B DNA AcHobo 1 465 -575 1516 194 0 45 chr11 30139507 30139816 -118643656 - AluJb SINE Alu -16 296 2 186 167 0 0 chr11 30139829 30139865 -118643607 + CT-rich Low_complexity Low_complexity 5 40 0 5890 103 25 2 chr11 30139869 30140451 -118643021 - L1PA14 LINE L1 -1 6160 5593 1897 143 14 0 chr11 30140451 30140738 -118642734 - AluSx SINE Alu -18 294 4 5890 103 25 2 chr11 30140738 30142035 -118641437 - L1PA14 LINE L1 -568 5593 4285 776 211 53 13 chr11 30142049 30142347 -118641125 - L1MB1 LINE L1 -13 6155 5795 2269 189 53 24 chr11 30142347 30142891 -118640581 + MER45B DNA AcHobo 480 1039 -1 252 59 0 0 chr11 30144024 30144058 -118639414 + (ATG)n Simple_repeat Simple_repeat 1 34 0 21 57 0 0 chr11 30144575 30144610 -118638862 + AT_rich Low_complexity Low_complexity 1 35 0 752 318 92 35 chr11 30144824 30145280 -118638192 - L2 LINE L2 -5 3308 2827 439 351 32 20 chr11 30146724 30146972 -118636500 - HAL1 LINE L1 -2104 403 153 296 223 80 18 chr11 30147098 30147210 -118636262 + L1ME LINE L1 4532 4650 -1496 1358 189 73 0 chr11 30147393 30147679 -118635793 - Tigger2 DNA MER2_type -11 2707 2401 10991 149 56 39 chr11 30147788 30149540 -118633932 - Tigger2 DNA MER2_type -564 2154 358 1990 136 0 0 chr11 30149540 30149899 -118633573 - AluSg SINE Alu 0 359 1 10991 149 56 39 chr11 30149899 30150264 -118633208 - Tigger2 DNA MER2_type -2360 358 1 465 208 35 0 chr11 30150732 30150905 -118632567 + (TA)n Simple_repeat Simple_repeat 1 179 0 347 301 104 7 chr11 30150947 30151207 -118632265 + L1ME LINE L1 5374 5654 -510 290 301 68 0 chr11 30151214 30151317 -118632155 + MER112 DNA MER1_type 27 136 -124 1200 215 53 30 chr11 30151317 30151665 -118631807 + MLT1C LTR MaLR 1 331 -59 3097 298 81 21 chr11 30153130 30153645 -118629827 - L1MEc LINE L1 -4599 1797 1314 468 0 0 0 chr11 30153645 30153697 -118629775 + (CA)n Simple_repeat Simple_repeat 2 53 0 3097 298 81 21 chr11 30153697 30154791 -118628681 - L1MEc LINE L1 -5082 1314 92 266 333 58 7 chr11 30154976 30155114 -118628358 + MIR SINE MIR 91 235 -27 205 275 165 9 chr11 30155608 30155717 -118627755 - MIR SINE MIR -6 256 131 365 131 16 0 chr11 30155747 30155808 -118627664 + MADE1 DNA Mariner 16 77 -3 193 278 111 40 chr11 30155893 30156019 -118627453 - MIR SINE MIR -63 199 65 1463 202 26 60 chr11 30157570 30158048 -118625424 - MER39 LTR ERV1 0 707 1 241 393 73 10 chr11 30158096 30158302 -118625170 - MIR SINE MIR -32 230 12 312 337 51 0 chr11 30159992 30160090 -118623382 - MIR SINE MIR -123 139 37 283 415 37 0 chr11 30160128 30160292 -118623180 + L3 LINE CR1 1009 1178 -399 22 35 0 0 chr11 30160460 30160489 -118622983 + AT_rich Low_complexity Low_complexity 1 29 0 508 265 82 71 chr11 30161089 30161357 -118622115 - MLT1J2 LTR MaLR -120 330 60 374 330 138 25 chr11 30161469 30161672 -118621800 - L2 LINE L2 -214 3099 2874 263 295 38 0 chr11 30161945 30162050 -118621422 - L1MC/D LINE L1 -1936 5872 5764 419 323 78 18 chr11 30162097 30162314 -118621158 + L2 LINE L2 3081 3310 -3 2146 213 47 29 chr11 30162384 30162895 -118620577 - MLT2B1 LTR ERVL 0 520 1 750 259 80 5 chr11 30163067 30163268 -118620204 + MIR SINE MIR 46 261 -1 1699 182 3 0 chr11 30165143 30165440 -118618032 - AluJo SINE Alu -14 298 1 21 36 0 0 chr11 30165716 30165744 -118617728 + AT_rich Low_complexity Low_complexity 1 28 0 375 23 0 0 chr11 30165843 30165887 -118617585 + (TTA)n Simple_repeat Simple_repeat 3 46 0 3891 73 2 29 chr11 30165887 30166433 -118617039 - L1PA7 LINE L1 -18 6136 5606 781 62 0 0 chr11 30166433 30166529 -118616943 + L1PA7 LINE L1 5516 5611 -561 889 280 92 38 chr11 30166564 30167010 -118616462 - L1ME3A LINE L1 -6 6164 5695 2024 259 41 17 chr11 30167423 30168130 -118615342 - L1MC4a LINE L1 -205 7603 6880 24 0 0 0 chr11 30168426 30168450 -118615022 + AT_rich Low_complexity Low_complexity 1 24 0 910 171 20 20 chr11 30169955 30170154 -118613318 + L1MA10 LINE L1 4208 4406 -1740 3641 205 38 11 chr11 30170158 30171166 -118612306 + L1MA10 LINE L1 5127 6334 0 267 283 58 25 chr11 30171212 30171332 -118612140 + L1ME LINE L1 5513 5636 -485 1192 167 0 78 chr11 30171700 30172006 -118611466 + L1MA4 LINE L1 6003 6284 -16 416 261 46 23 chr11 30172323 30172453 -118611019 + L2 LINE L2 3180 3312 -1 5420 131 18 13 chr11 30172875 30174143 -118609329 + L1PA15 LINE L1 4882 6165 0 407 369 42 25 chr11 30174985 30175226 -118608246 - L2 LINE L2 -219 3053 2809 1268 164 84 0 chr11 30175226 30175452 -118608020 - Tigger5 DNA MER2_type 0 2323 2079 336 263 0 0 chr11 30175440 30175520 -118607952 - Tigger5 DNA MER2_type -2241 82 3 * 211 342 45 18 chr11 30175528 30175639 -118607833 - L2 LINE L2 -528 2786 2673 363 305 89 47 chr11 30176027 30176263 -118607209 - L2 LINE L2 -706 2608 2363 28 29 0 0 chr11 30176349 30176384 -118607088 + AT_rich Low_complexity Low_complexity 1 35 0 433 261 97 61 chr11 30176673 30176838 -118606634 - LTR16A LTR ERVL -71 379 209 251 271 178 28 chr11 30176866 30176973 -118606499 - LTR16A LTR ERVL -299 151 29 1231 184 0 93 chr11 30177249 30177592 -118605880 - AluY SINE Alu 0 311 1 22 0 0 0 chr11 30177592 30177614 -118605858 + AT_rich Low_complexity Low_complexity 1 22 0 2366 44 0 93 chr11 30178220 30178563 -118604909 - AluY SINE Alu 0 311 1 216 208 42 0 chr11 30179156 30179204 -118604268 + GA-rich Low_complexity Low_complexity 5 54 0 1858 161 18 0 chr11 30179602 30179931 -118603541 + L1PB4 LINE L1 5822 6156 0 568 351 22 30 chr11 30180253 30180657 -118602815 - MLT1K LTR MaLR 0 588 188 495 0 0 0 chr11 30181421 30181476 -118601996 + (TA)n Simple_repeat Simple_repeat 2 56 0 21 0 0 0 chr11 30182057 30182078 -118601394 + AT_rich Low_complexity Low_complexity 1 21 0 404 357 115 50 chr11 30182403 30183131 -118600341 + L3 LINE CR1 230 1005 -572 306 359 16 26 chr11 30183500 30183692 -118599780 - MLT1K LTR MaLR -274 314 125 339 130 0 0 chr11 30183893 30183947 -118599525 + (A)n Simple_repeat Simple_repeat 1 54 0 265 336 44 48 chr11 30183964 30184214 -118599258 + L3 LINE CR1 1295 1543 -34 378 338 104 7 chr11 30184233 30184387 -118599085 + MIR SINE MIR 20 188 -74 185 348 0 11 chr11 30184762 30184854 -118598618 + MIR SINE MIR 172 262 0 277 198 272 0 chr11 30185688 30185769 -118597703 - L2 LINE L2 -1 3312 3210 21 0 0 0 chr11 30186286 30186307 -118597165 + AT_rich Low_complexity Low_complexity 1 21 0 183 61 30 30 chr11 30187168 30187201 -118596271 + MER5A DNA MER1_type 41 73 -116 207 236 36 0 chr11 30187373 30187428 -118596044 - MIR SINE MIR -64 144 88 25 31 0 0 chr11 30188340 30188372 -118595100 + AT_rich Low_complexity Low_complexity 1 32 0 1360 154 38 8 chr11 30188704 30188970 -118594502 - L1MA9 LINE L1 -38 6274 6001 189 74 0 0 chr11 30189101 30189128 -118594344 + (TATG)n Simple_repeat Simple_repeat 2 28 0 2210 94 0 3 chr11 30189128 30189415 -118594057 - AluSq SINE Alu -27 286 1 519 325 36 16 chr11 30189468 30189717 -118593755 - L1ME LINE L1 -329 5792 5539 206 298 0 18 chr11 30189779 30189836 -118593636 + MIR SINE MIR 2 57 -205 22 0 0 0 chr11 30191979 30192001 -118591471 + AT_rich Low_complexity Low_complexity 1 22 0 2642 78 14 0 chr11 30192113 30192474 -118590998 + L1PA13 LINE L1 5791 6156 -7 24 85 0 0 chr11 30192559 30192618 -118590854 + AT_rich Low_complexity Low_complexity 1 59 0 238 261 0 0 chr11 30192778 30192824 -118590648 + polypyrimidine Low_complexity Low_complexity 1 46 0 349 202 0 19 chr11 30193053 30193157 -118590315 + (TA)n Simple_repeat Simple_repeat 1 102 0 363 294 134 53 chr11 30193391 30193785 -118589687 + L1ME4a LINE L1 5493 5918 -203 2140 151 48 38 chr11 30193896 30194435 -118589037 - MLT2A2 LTR ERVL 0 554 1 534 220 104 11 chr11 30194598 30194780 -118588692 - LTR37B LTR ERV1 -73 395 197 234 254 76 17 chr11 30194825 30194943 -118588529 - LTR37B LTR ERV1 -270 198 74 792 275 57 50 chr11 30195140 30195595 -118587877 - MLT1H1 LTR MaLR -46 509 5 958 281 74 5 chr11 30196941 30197318 -118586154 - L1MEc LINE L1 -4585 1811 1409 1020 251 169 31 chr11 30197318 30197351 -118586121 - MLT2B1 LTR ERVL -7 513 486 399 73 0 0 chr11 30197351 30197406 -118586066 + (TG)n Simple_repeat Simple_repeat 2 56 0 1020 251 169 31 chr11 30197406 30197823 -118585649 - MLT2B1 LTR ERVL -34 486 1 2342 293 107 23 chr11 30197832 30198869 -118584603 - L1MEc LINE L1 -4993 1403 240 4164 195 46 9 chr11 30198869 30199737 -118583735 - MER54A LTR ERVL 0 901 2 2342 293 107 23 chr11 30199737 30199958 -118583514 - L1MEc LINE L1 -6156 240 39 21 0 0 0 chr11 30199959 30199980 -118583492 + AT_rich Low_complexity Low_complexity 1 21 0 285 29 0 0 chr11 30200026 30200060 -118583412 + (TA)n Simple_repeat Simple_repeat 2 35 0 267 152 0 0 chr11 30200489 30200535 -118582937 + (TA)n Simple_repeat Simple_repeat 2 47 0 335 179 0 13 chr11 30201078 30201156 -118582316 + CT-rich Low_complexity Low_complexity 4 80 0 610 241 127 6 chr11 30201364 30201522 -118581950 - MER45A DNA AcHobo 0 178 2 228 86 0 0 chr11 30201793 30201828 -118581644 + (TC)n Simple_repeat Simple_repeat 1 35 0 23 0 0 0 chr11 30202927 30202950 -118580522 + AT_rich Low_complexity Low_complexity 1 23 0 431 229 80 96 chr11 30203632 30203820 -118579652 - L2 LINE L2 -3 3310 3126 3386 32 0 0 chr11 30203973 30204373 -118579099 - L1PA3 LINE L1 -1711 4435 4036 3238 32 0 5 chr11 30204370 30204772 -118578700 + L1PA3 LINE L1 4431 4830 -1316 * 7489 33 1 2 chr11 30204920 30206274 -118577198 + L1PA3 LINE L1 4803 6155 0 318 430 24 0 chr11 30206518 30206725 -118576747 + L1ME2 LINE L1 370 581 -6026 3708 193 27 60 chr11 30206959 30207808 -118575664 + L1MCa LINE L1 26 846 -5580 1663 202 39 40 chr11 30207836 30208626 -118574846 + L1MCa LINE L1 840 2699 -3727 * 1921 234 33 12 chr11 30208625 30209203 -118574269 + L1MCa LINE L1 3395 3984 -2442 980 265 134 46 chr11 30209259 30210226 -118573246 + L1ME2 LINE L1 1970 2960 -3466 2043 133 0 7 chr11 30210226 30210535 -118572937 + AluSx SINE Alu 2 308 -4 980 265 134 46 chr11 30210535 30210632 -118572840 + L1ME2 LINE L1 2960 3047 -3379 677 288 143 21 chr11 30210621 30211090 -118572382 + L1ME2 LINE L1 4050 4575 -1851 * 684 224 4 78 chr11 30211110 30211342 -118572130 - L1ME LINE L1 -350 5816 5602 2312 250 51 55 chr11 30211353 30211966 -118571506 + L1ME2 LINE L1 4949 5563 -881 3372 81 2 9 chr11 30211966 30212413 -118571059 - MLT2A1 LTR ERVL 0 444 1 2312 250 51 55 chr11 30212413 30213294 -118570178 + L1ME2 LINE L1 5563 6435 -9 1486 305 64 39 chr11 30213466 30214189 -118569283 - L2 LINE L2 -266 3047 2313 200 360 51 63 chr11 30214347 30214522 -118568950 - L3 LINE CR1 -4 1573 1401 2178 74 46 0 chr11 30214980 30215265 -118568207 - AluY SINE Alu -13 298 1 424 313 207 32 chr11 30216216 30216622 -118566850 + MLT1H LTR MaLR 73 549 0 27 0 0 0 chr11 30216988 30217015 -118566457 + AT_rich Low_complexity Low_complexity 1 27 0 2139 103 0 10 chr11 30217022 30217312 -118566160 - AluSx SINE Alu -25 287 1 381 255 215 7 chr11 30217473 30217622 -118565850 - MER5A DNA MER1_type 0 189 10 252 325 44 26 chr11 30218489 30218603 -118564869 + MIR SINE MIR 54 169 -93 221 288 15 0 chr11 30218663 30218729 -118564743 - L3 LINE CR1 -257 1320 1254 242 287 157 35 chr11 30218737 30218852 -118564620 - L2 LINE L2 0 3272 3144 440 298 112 27 chr11 30219006 30219194 -118564278 - MIR SINE MIR -36 226 23 1977 124 32 0 chr11 30221139 30221422 -118562050 - AluSx SINE Alu -14 298 7 24 0 0 0 chr11 30224069 30224093 -118559379 + AT_rich Low_complexity Low_complexity 1 24 0 312 294 123 57 chr11 30224293 30224504 -118558968 - MLT1K LTR MaLR -223 365 141 2393 162 52 0 chr11 30224567 30224974 -118558498 - MSTC LTR MaLR 0 428 1 23 0 0 0 chr11 30226204 30226227 -118557245 + AT_rich Low_complexity Low_complexity 1 23 0 264 336 25 0 chr11 30226615 30226734 -118556738 - MARNA DNA Mariner -17 569 448 313 195 98 12 chr11 30226898 30226980 -118556492 - MIR SINE MIR -87 175 87 619 248 84 36 chr11 30226982 30227297 -118556175 - MLT1H1 LTR MaLR 0 555 161 13526 143 21 36 chr11 30227473 30228530 -118554942 - Tigger1 DNA MER2_type 0 2418 1347 2068 98 7 0 chr11 30228530 30228828 -118554644 + AluSg SINE Alu 4 303 0 447 19 0 0 chr11 30228827 30228879 -118554593 + (TA)n Simple_repeat Simple_repeat 2 53 0 13526 143 21 36 chr11 30228828 30230275 -118553197 - Tigger1 DNA MER2_type -1071 1347 1 2126 96 4 0 chr11 30230468 30230772 -118552700 - AluY SINE Alu 0 305 1 2921 20 0 0 chr11 30230812 30231163 -118552309 - L1PA3 LINE L1 -847 5299 4949 7349 24 2 0 chr11 30231163 30232023 -118551449 + L1PA3 LINE L1 5289 6155 0 968 191 70 44 chr11 30232303 30232618 -118550854 + MER33 DNA MER1_type 1 323 -1 265 270 112 73 chr11 30233350 30233528 -118549944 - MLT1I LTR MaLR -127 282 98 24 77 0 0 chr11 30234444 30234496 -118548976 + AT_rich Low_complexity Low_complexity 1 52 0 624 201 84 29 chr11 30234612 30234902 -118548570 + MLT1A2 LTR MaLR 2 374 0 363 316 44 0 chr11 30235737 30235851 -118547621 + MER94 DNA DNA 1 119 -15 448 303 134 13 chr11 30236004 30236235 -118547237 + LTR33A LTR ERVL 4 262 -261 24 0 0 0 chr11 30236398 30236422 -118547050 + AT_rich Low_complexity Low_complexity 1 24 0 370 346 106 40 chr11 30236773 30237369 -118546103 - L1ME4a LINE L1 -197 5924 5290 21 36 0 0 chr11 30237485 30237513 -118545959 + AT_rich Low_complexity Low_complexity 1 28 0 512 242 70 0 chr11 30237551 30237679 -118545793 + MIR SINE MIR 70 206 -56 1708 132 169 18 chr11 30237711 30237964 -118545508 + THE1C LTR MaLR 1 316 -59 2156 63 0 60 chr11 30237964 30238298 -118545174 - AluY SINE Alu 0 316 1 1708 132 169 18 chr11 30238298 30238369 -118545103 + THE1C LTR MaLR 316 375 0 2482 67 0 6 chr11 30239173 30239486 -118543986 - AluY SINE Alu 0 311 1 469 331 46 36 chr11 30239862 30240143 -118543329 - L2 LINE L2 -442 2872 2589 1727 182 7 0 chr11 30240762 30241058 -118542414 + AluSx SINE Alu 1 298 -14 1098 244 71 83 chr11 30242149 30242571 -118540901 - MLT1F LTR MaLR -87 455 64 213 167 24 0 chr11 30242624 30242666 -118540806 + (TA)n Simple_repeat Simple_repeat 2 44 0 446 294 87 28 chr11 30243651 30243869 -118539603 + Charlie8 DNA MER1_type 1 231 -2186 1286 281 94 24 chr11 30245168 30245697 -118537775 + MLT1H1 LTR MaLR 1 555 0 225 0 0 0 chr11 30245712 30245737 -118537735 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 350 399 75 0 chr11 30245739 30245927 -118537545 + L3 LINE CR1 1293 1494 -83 23 0 0 0 chr11 30246052 30246075 -118537397 + AT_rich Low_complexity Low_complexity 1 23 0 592 324 50 8 chr11 30246133 30246371 -118537101 - MIR SINE MIR -4 258 11 230 242 16 0 chr11 30246470 30246532 -118536940 + (TG)n Simple_repeat Simple_repeat 2 64 0 231 279 15 0 chr11 30246719 30246787 -118536685 + CT-rich Low_complexity Low_complexity 2 70 0 271 303 171 13 chr11 30246843 30246995 -118536477 - MIR SINE MIR -73 189 14 211 391 65 5 chr11 30247044 30247228 -118536244 - L3b LINE CR1 -127 1456 1262 439 284 34 14 chr11 30247339 30247487 -118535985 + MIR SINE MIR 47 197 -65 466 322 22 33 chr11 30247524 30247704 -118535768 - MIR SINE MIR -48 214 37 244 258 113 0 chr11 30248045 30248142 -118535330 - MIR SINE MIR 0 262 155 235 289 174 41 chr11 30248606 30248727 -118534745 - MIR3 SINE MIR -52 156 20 453 283 50 85 chr11 30249796 30250079 -118533393 + HAL1 LINE L1 811 1083 -1424 2152 109 13 0 chr11 30250157 30250459 -118533013 + AluSq SINE Alu 1 306 -7 194 298 39 39 chr11 30250662 30250766 -118532706 - L2 LINE L2 -665 2649 2546 2441 50 0 0 chr11 30251574 30251873 -118531599 + L1PA3 LINE L1 5854 6152 -3 21 36 0 0 chr11 30251956 30251984 -118531488 + AT_rich Low_complexity Low_complexity 1 28 0 1215 161 87 29 chr11 30252024 30252266 -118531206 + AluJo SINE Alu 12 267 -45 507 289 51 71 chr11 30252266 30252429 -118531043 + L1MC/D LINE L1 3322 3487 -2659 3239 115 37 54 chr11 30252429 30253019 -118530453 + LTR19B LTR ERV1 1 580 0 507 289 51 71 chr11 30253019 30253517 -118529955 + L1MC/D LINE L1 3487 3970 -2176 200 351 0 0 chr11 30253517 30253591 -118529881 + MIR SINE MIR 156 229 -33 362 310 67 34 chr11 30253735 30254299 -118529173 + L1MC/D LINE L1 4080 4662 -1484 314 309 125 34 chr11 30254301 30254575 -118528897 + L1MC/D LINE L1 5450 5745 -530 2301 97 0 10 chr11 30254907 30255205 -118528267 + AluSq SINE Alu 1 295 -18 1668 182 0 35 chr11 30255783 30256102 -118527370 + AluJo SINE Alu 1 308 -4 356 284 91 72 chr11 30256124 30256388 -118527084 + HAL1 LINE L1 1374 1642 -865 292 319 52 30 chr11 30256655 30256790 -118526682 + L2 LINE L2 3176 3313 0 375 291 16 16 chr11 30257465 30257592 -118525880 + LTR16C LTR ERVL 353 479 -12 1541 181 8 8 chr11 30258002 30258267 -118525205 - AluJo SINE Alu -35 277 13 307 198 40 20 chr11 30258454 30258555 -118524917 + (TA)n Simple_repeat Simple_repeat 2 104 0 227 351 53 11 chr11 30260223 30260317 -118523155 + L2 LINE L2 2976 3073 -199 27 0 0 0 chr11 30260371 30260398 -118523074 + AT_rich Low_complexity Low_complexity 1 27 0 239 0 32 0 chr11 30261599 30261630 -118521842 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 379 303 67 55 chr11 30263045 30263210 -118520262 + MIR SINE MIR 6 172 -90 1589 162 40 15 chr11 30263395 30263723 -118519749 - MER44D DNA MER2_type -3 606 1 274 376 20 0 chr11 30263856 30263957 -118519515 - MIR SINE MIR -66 142 40 334 200 56 22 chr11 30264007 30264097 -118519375 - MLT1H LTR MaLR -2 547 455 357 229 146 73 chr11 30264174 30264379 -118519093 - MLT1H LTR MaLR -206 343 124 367 243 114 14 chr11 30264411 30264551 -118518921 + L1ME4a LINE L1 5968 6121 0 377 295 60 56 chr11 30264676 30264944 -118518528 + L2 LINE L2 2118 2386 -928 463 332 4 97 chr11 30265251 30265519 -118517953 + L2 LINE L2 2987 3229 -43 5454 179 35 26 chr11 30265657 30266470 -118517002 - L1PB3 LINE L1 -3 6151 5347 2346 106 15 3 chr11 30266470 30266810 -118516662 - L1PA10 LINE L1 -4 6164 5821 5454 179 35 26 chr11 30266810 30268147 -118515325 - L1PB3 LINE L1 -807 5347 3985 29 0 0 0 chr11 30268521 30268550 -118514922 + AT_rich Low_complexity Low_complexity 1 29 0 236 263 18 0 chr11 30269006 30269063 -118514409 - L2 LINE L2 0 3313 3256 203 264 75 0 chr11 30269140 30269193 -118514279 + MIR SINE MIR 203 259 -3 247 206 0 43 chr11 30269282 30269374 -118514098 + (CATATA)n Simple_repeat Simple_repeat 4 91 0 21 36 0 0 chr11 30269880 30269908 -118513564 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 30270238 30270260 -118513212 + AT_rich Low_complexity Low_complexity 1 22 0 305 290 62 43 chr11 30270762 30270924 -118512548 - L2 LINE L2 0 3313 3149 252 345 105 66 chr11 30271297 30272144 -118511328 - L2 LINE L2 -744 2570 1691 251 303 20 10 chr11 30323259 30323358 -118460114 + LTR67 LTR ERVL 458 557 0 332 265 140 37 chr11 30324431 30324567 -118458905 - L2 LINE L2 -1 3312 3163 655 227 30 17 chr11 30324567 30324761 -118458711 - MSTB2 LTR MaLR 0 457 201 889 142 0 0 chr11 30324790 30324917 -118458555 + AluY SINE Alu 174 300 -11 247 116 93 0 chr11 30325033 30325076 -118458396 - MSTB2 LTR MaLR -410 47 1 385 345 47 30 chr11 30325076 30325308 -118458164 - L2 LINE L2 -146 3167 2932 1620 324 102 23 chr11 30325406 30326371 -118457101 - L2 LINE L2 -542 2772 1732 576 323 55 17 chr11 30326441 30326676 -118456796 - MIR SINE MIR -8 254 11 267 247 12 24 chr11 30326710 30326795 -118456677 - L2 LINE L2 -1633 1681 1598 2168 116 7 0 chr11 30327291 30327594 -118455878 - AluSq SINE Alu -6 307 3 255 227 13 27 chr11 30327612 30327687 -118455785 - MLT1-int LTR MaLR -1294 77 4 307 293 122 8 chr11 30327929 30328052 -118455420 - MLT1H LTR MaLR -401 148 12 281 401 12 66 chr11 30328169 30328593 -118454879 - L3 LINE CR1 -1 1576 1176 23 0 0 0 chr11 30329629 30329652 -118453820 + AT_rich Low_complexity Low_complexity 1 23 0 231 291 73 46 chr11 30330391 30330542 -118452930 + MIR SINE MIR 99 253 -9 183 80 0 0 chr11 30330602 30330627 -118452845 + (TG)n Simple_repeat Simple_repeat 2 26 0 1387 244 28 3 chr11 30330847 30331167 -118452305 + MLT1D LTR MaLR 178 505 0 2361 226 18 50 chr11 30331167 30331845 -118451627 + MLT1D-int LTR MaLR 1 656 -715 1707 221 11 160 chr11 30331903 30332008 -118451464 + MLT1D-int LTR MaLR 661 780 -591 2391 71 10 10 chr11 30332008 30332317 -118451155 + AluY SINE Alu 1 309 -2 1707 221 11 160 chr11 30332317 30333016 -118450456 + MLT1D-int LTR MaLR 780 1345 -26 2119 192 27 74 chr11 30333030 30333546 -118449926 + MLT1D LTR MaLR 1 492 -13 297 316 101 32 chr11 30333772 30333930 -118449542 + MIR SINE MIR 21 189 -73 760 219 158 5 chr11 30333962 30334158 -118449314 - MIR SINE MIR -30 232 7 1265 308 122 18 chr11 30335452 30336050 -118447422 - L2 LINE L2 -622 2692 2033 3236 149 23 21 chr11 30336233 30336756 -118446716 + MER1A DNA MER1_type 1 524 -3 23 0 0 0 chr11 30337022 30337045 -118446427 + AT_rich Low_complexity Low_complexity 1 23 0 451 293 81 60 chr11 30337780 30338063 -118445409 - LTR67 LTR ERVL -164 393 105 2095 108 0 0 chr11 30338528 30338805 -118444667 + AluSc SINE Alu 1 277 -32 1164 78 13 13 chr11 30338805 30339119 -118444353 + (GAAA)n Simple_repeat Simple_repeat 1 314 0 1189 252 78 5 chr11 30339644 30340017 -118443455 - L1ME2 LINE L1 0 6164 5765 493 279 120 13 chr11 30340221 30340379 -118443093 - MIR SINE MIR -69 193 19 402 353 68 14 chr11 30340764 30340985 -118442487 + MIR SINE MIR 20 252 -10 733 292 53 13 chr11 30341212 30341438 -118442034 + MIR SINE MIR 13 247 -15 574 287 90 37 chr11 30341820 30342012 -118441460 - L2 LINE L2 -2042 1272 1061 658 337 47 49 chr11 30342012 30342463 -118441009 - LTR16A LTR ERVL 0 450 1 574 287 90 37 chr11 30342463 30342538 -118440934 - L2 LINE L2 -2253 1061 991 243 322 144 0 chr11 30343823 30343941 -118439531 + MIR3 SINE MIR 12 146 -62 233 241 18 80 chr11 30344095 30344207 -118439265 - MIR SINE MIR -6 256 152 290 298 96 40 chr11 30345403 30345471 -118438001 - MIR SINE MIR -37 225 162 2216 111 3 0 chr11 30345471 30345768 -118437704 - AluSc SINE Alu -11 298 1 290 298 96 40 chr11 30345768 30345878 -118437594 - MIR SINE MIR -100 162 39 290 298 12 0 chr11 30346936 30347020 -118436452 + L2 LINE L2 3188 3272 0 1129 65 13 7 chr11 30348165 30348319 -118435153 - L1PA5 LINE L1 -4 6150 5996 180 388 19 10 chr11 30348693 30348796 -118434676 + L2 LINE L2 2231 2334 -980 260 379 42 27 chr11 30349235 30349758 -118433714 + L2 LINE L2 2527 3058 -214 21 0 0 0 chr11 30349966 30349987 -118433485 + AT_rich Low_complexity Low_complexity 1 21 0 390 319 52 52 chr11 30351270 30351480 -118431992 + MIR SINE MIR 48 257 -5 21 0 0 0 chr11 30352103 30352124 -118431348 + AT_rich Low_complexity Low_complexity 1 21 0 223 333 48 0 chr11 30352722 30352785 -118430687 - L2 LINE L2 -59 3213 3148 808 312 119 56 chr11 30353346 30354079 -118429393 - L2 LINE L2 0 3313 2518 662 342 101 47 chr11 30355091 30355705 -118427767 + L1M3d LINE L1 420 1066 -5237 207 0 0 0 chr11 30355933 30355956 -118427516 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2641 266 81 7 chr11 30356116 30357231 -118426241 + L1M4 LINE L1 827 1865 -4519 1367 207 66 18 chr11 30357307 30357655 -118425817 + MLT1A1 LTR MaLR 1 354 -11 1535 194 16 57 chr11 30357675 30358062 -118425410 + L1MA7 LINE L1 5911 6281 -10 22 0 0 0 chr11 30358297 30358319 -118425153 + AT_rich Low_complexity Low_complexity 1 22 0 342 276 103 33 chr11 30358943 30359186 -118424286 + L1M4 LINE L1 4111 4370 -2012 263 315 144 18 chr11 30360085 30360307 -118423165 - L2 LINE L2 -2588 726 477 324 332 45 64 chr11 30360976 30361178 -118422294 + L2 LINE L2 3075 3272 0 291 267 158 17 chr11 30361744 30361864 -118421608 - L2 LINE L2 0 3272 3136 573 285 50 11 chr11 30361907 30362086 -118421386 + MIR SINE MIR 77 262 0 298 299 142 8 chr11 30362279 30362406 -118421066 + MIR SINE MIR 105 248 -14 278 271 0 42 chr11 30362406 30362502 -118420970 + GA-rich Low_complexity Low_complexity 3 94 0 920 253 96 94 chr11 30362537 30363071 -118420401 - MLT1F LTR MaLR -3 539 5 738 269 92 21 chr11 30363103 30363341 -118420131 + MIR SINE MIR 8 262 0 2208 142 73 19 chr11 30363697 30364107 -118419365 + MSTB1 LTR MaLR 1 432 0 208 313 31 0 chr11 30364538 30364602 -118418870 - MIR3 SINE MIR -51 157 92 255 246 186 8 chr11 30364666 30364784 -118418688 - MIR SINE MIR -32 230 92 197 292 57 99 chr11 30364771 30364963 -118418509 - L2 LINE L2 0 3313 3130 * 196 326 20 20 chr11 30365127 30365225 -118418247 - L2 LINE L2 -341 2973 2876 249 33 0 0 chr11 30366144 30366174 -118417298 + (CAAT)n Simple_repeat Simple_repeat 2 31 0 212 143 71 0 chr11 30366174 30366216 -118417256 - L2 LINE L2 -12 3260 3216 1871 153 29 40 chr11 30366860 30367239 -118416233 - THE1C LTR MaLR 0 375 1 2369 78 0 16 chr11 30368035 30368344 -118415128 - AluY SINE Alu -6 305 2 207 394 71 0 chr11 30368997 30369096 -118414376 + L2 LINE L2 3137 3242 -30 1809 207 40 42 chr11 30369436 30369939 -118413533 + MLT1D LTR MaLR 1 502 -3 182 375 0 23 chr11 30371820 30371908 -118411564 + MIR SINE MIR 53 138 -124 631 228 117 0 chr11 30373787 30373932 -118409540 - MLT1E LTR MaLR -431 162 1 24 91 0 0 chr11 30374192 30374258 -118409214 + AT_rich Low_complexity Low_complexity 1 66 0 211 261 14 43 chr11 30374902 30374971 -118408501 + MIR3 SINE MIR 121 187 -21 279 222 16 0 chr11 30376017 30376080 -118407392 - MER94 DNA DNA -69 65 2 877 233 28 60 chr11 30376417 30376666 -118406806 + MER102b DNA MER1_type 99 339 -2 284 350 133 51 chr11 30376720 30377365 -118406107 + L2 LINE L2 2031 2728 -586 313 298 79 102 chr11 30377548 30377813 -118405659 + L2 LINE L2 3014 3272 0 22 56 0 0 chr11 30377928 30377964 -118405508 + AT_rich Low_complexity Low_complexity 1 36 0 285 140 35 35 chr11 30378419 30378476 -118404996 - MIR SINE MIR -148 114 58 494 280 86 16 chr11 30379193 30379379 -118404093 + MIR SINE MIR 64 262 0 2124 134 125 2 chr11 30380264 30380640 -118402832 + MSTA LTR MaLR 1 428 0 408 279 123 19 chr11 30382284 30382438 -118401034 - L2 LINE L2 -10 3262 3093 248 250 0 0 chr11 30382673 30382725 -118400747 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 810 63 46 11 chr11 30382951 30383125 -118400347 + (TA)n Simple_repeat Simple_repeat 1 180 0 1819 200 46 10 chr11 30383810 30384468 -118399004 + L1M4c LINE L1 1675 2833 -3549 25393 146 21 12 chr11 30384473 30385694 -118397778 + L1PA8A LINE L1 2 1210 -5236 189 74 0 0 chr11 30385694 30385721 -118397751 + (CAA)n Simple_repeat Simple_repeat 1 27 0 25393 146 21 12 chr11 30385721 30390823 -118392649 + L1PA8A LINE L1 1210 6446 0 10103 205 24 13 chr11 30390807 30391648 -118391824 + L1PA16 LINE L1 2816 3646 -2756 * 1927 174 0 16 chr11 30391648 30391964 -118391508 + AluJb SINE Alu 1 311 -1 10103 205 24 13 chr11 30391964 30394648 -118388824 + L1PA16 LINE L1 3646 6384 -18 205 180 33 16 chr11 30394662 30394723 -118388749 + A-rich Low_complexity Low_complexity 3 64 0 185 179 0 18 chr11 30395265 30395321 -118388151 + (CA)n Simple_repeat Simple_repeat 2 56 0 1601 150 0 0 chr11 30395653 30395886 -118387586 + AluJb SINE Alu 1 233 -79 1895 162 39 43 chr11 30395886 30396246 -118387226 + THE1B LTR MaLR 1 360 -72 1185 66 0 0 chr11 30396246 30396398 -118387074 - L1PA5 LINE L1 -4 6150 5999 1895 162 39 43 chr11 30396398 30396459 -118387013 + THE1B LTR MaLR 360 420 -12 219 69 0 0 chr11 30396470 30396499 -118386973 + (TA)n Simple_repeat Simple_repeat 2 30 0 10432 136 16 1 chr11 30396499 30398056 -118385416 + THE1B-int LTR MaLR 1 1580 0 1936 149 27 49 chr11 30398056 30398425 -118385047 + THE1B LTR MaLR 3 364 0 414 164 14 0 chr11 30398425 30398498 -118384974 + AluJb SINE Alu 229 302 -10 22 0 0 0 chr11 30398799 30398821 -118384651 + AT_rich Low_complexity Low_complexity 1 22 0 1352 130 65 0 chr11 30399341 30399541 -118383931 - AluSx SINE Alu -99 213 1 340 344 55 12 chr11 30401113 30401276 -118382196 + L1MC4a LINE L1 3521 3690 -2456 2133 75 6 70 chr11 30401312 30401643 -118381829 + AluSg SINE Alu 1 310 0 229 250 0 0 chr11 30401649 30401709 -118381763 + L1P LINE L1 3739 3798 -2348 231 204 143 82 chr11 30402239 30402304 -118381168 - MER5C DNA MER1_type 0 324 250 1791 164 0 30 chr11 30402304 30402609 -118380863 - AluJb SINE Alu -16 296 1 231 204 143 82 chr11 30402609 30402641 -118380831 - MER5C DNA MER1_type -74 250 221 371 308 65 34 chr11 30402791 30403207 -118380265 + L1MC4a LINE L1 4519 4947 -1199 21 71 0 0 chr11 30403249 30403291 -118380181 + AT_rich Low_complexity Low_complexity 1 42 0 26 0 0 0 chr11 30403464 30403490 -118379982 + AT_rich Low_complexity Low_complexity 1 26 0 659 312 85 20 chr11 30403503 30403997 -118379475 + L1MC4a LINE L1 5305 5830 -1978 * 1610 274 106 19 chr11 30403989 30404566 -118378906 + L1M3e LINE L1 466 1092 -6397 * 2382 266 43 45 chr11 30404564 30404956 -118378516 + L1M3e LINE L1 2018 2409 -5156 2267 118 0 6 chr11 30404956 30405270 -118378202 - AluSx SINE Alu 0 312 1 2382 266 43 45 chr11 30405270 30406652 -118376820 + L1M3e LINE L1 2409 3751 -3814 950 191 47 63 chr11 30406656 30406995 -118376477 - MSTD LTR MaLR -4 392 9 6216 244 28 47 chr11 30407002 30408624 -118374848 - MSTD-int LTR MaLR 0 1735 144 20790 143 42 12 chr11 30408625 30409186 -118374286 - L1 LINE L1 -3524 4041 3498 186 43 0 0 chr11 30409186 30409209 -118374263 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 20790 143 42 12 chr11 30409209 30412564 -118370908 - L1 LINE L1 -4067 3498 16 576 194 79 24 chr11 30412549 30412714 -118370758 - MSTD-int LTR MaLR -1560 175 2 * 1157 202 151 42 chr11 30412716 30413073 -118370399 - MSTD LTR MaLR 0 396 1 1639 253 69 21 chr11 30413074 30413636 -118369836 + L1M3e LINE L1 3748 4336 -3229 351 0 0 0 chr11 30415096 30415135 -118368337 + (TG)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr11 30415699 30415721 -118367751 + AT_rich Low_complexity Low_complexity 1 22 0 266 170 6 2 chr11 30415889 30415963 -118367509 - MLT1H LTR MaLR -20 606 461 681 243 55 72 chr11 30416075 30416367 -118367105 - MLT1H LTR MaLR -251 298 12 2582 205 78 8 chr11 30416764 30417553 -118365919 + MER73 LTR ERVL 1 641 -3 699 273 28 0 chr11 30418153 30418329 -118365143 + MER117 DNA MER1_type 16 196 -1 201 39 0 0 chr11 30418361 30418387 -118365085 + (A)n Simple_repeat Simple_repeat 1 26 0 187 313 62 16 chr11 30418389 30418453 -118365019 - MIR SINE MIR -106 102 36 240 217 83 0 chr11 30418899 30418959 -118364513 + LTR67 LTR ERVL 491 555 -2 2271 83 3 61 chr11 30419247 30419574 -118363898 - AluSp SINE Alu -5 308 1 2081 104 3 17 chr11 30421777 30422096 -118361376 - AluSg SINE Alu 0 310 1 252 335 141 12 chr11 30422334 30422504 -118360968 + MIR SINE MIR 22 213 -49 249 300 31 31 chr11 30422689 30422819 -118360653 - L2 LINE L2 -2 3270 3141 742 250 54 73 chr11 30423152 30423412 -118360060 - MIR SINE MIR 0 262 8 301 260 8 8 chr11 30423675 30423802 -118359670 + CT-rich Low_complexity Low_complexity 2 128 0 2078 68 0 0 chr11 30424082 30424353 -118359119 + AluY SINE Alu 37 307 0 29 28 0 0 chr11 30424727 30424763 -118358709 + AT_rich Low_complexity Low_complexity 1 36 0 202 345 35 0 chr11 30425269 30425356 -118358116 - MIR SINE MIR -5 257 168 2452 80 0 0 chr11 30426130 30426441 -118357031 - AluY SINE Alu 0 311 1 2044 124 7 0 chr11 30426636 30426927 -118356545 + AluSx SINE Alu 1 293 -19 296 298 44 44 chr11 30427107 30427379 -118356093 + L1MC/D LINE L1 3877 4148 -1998 21 0 0 0 chr11 30427463 30427484 -118355988 + AT_rich Low_complexity Low_complexity 1 21 0 272 310 144 39 chr11 30427754 30428748 -118354724 + L1MC/D LINE L1 4557 5397 -749 361 333 48 29 chr11 30429352 30429643 -118353829 + L1MEc LINE L1 1355 1532 -5327 229 190 13 25 chr11 30429656 30429735 -118353737 + L1M3de LINE L1 1743 1820 -4833 636 236 46 36 chr11 30429778 30429973 -118353499 - L2 LINE L2 0 3313 3117 1666 284 104 20 chr11 30430148 30430744 -118352728 - L2 LINE L2 -514 2800 2155 23 86 0 0 chr11 30430894 30430952 -118352520 + AT_rich Low_complexity Low_complexity 1 58 0 1000 195 22 34 chr11 30431066 30431333 -118352139 + L1MC5 LINE L1 6976 7239 -722 2165 120 0 0 chr11 30431738 30432029 -118351443 + AluSx SINE Alu 1 291 -21 308 160 76 0 chr11 30432155 30432274 -118351198 + (TA)n Simple_repeat Simple_repeat 1 128 0 2153 145 105 13 chr11 30433357 30433749 -118349723 + MSTA LTR MaLR 1 428 0 560 300 144 11 chr11 30433888 30434158 -118349314 - L2 LINE L2 0 3313 3008 217 313 17 61 chr11 30439787 30439902 -118343570 + MIR SINE MIR 103 212 -50 22 56 0 0 chr11 30440035 30440071 -118343401 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr11 30440134 30440163 -118343309 + AT_rich Low_complexity Low_complexity 1 29 0 183 204 0 0 chr11 30440596 30440640 -118342832 + (TGAA)n Simple_repeat Simple_repeat 3 46 0 289 409 120 12 chr11 30440641 30440900 -118342572 - L2 LINE L2 -19 3253 2967 254 313 21 31 chr11 30441021 30441117 -118342355 - MER5A DNA MER1_type -11 178 84 2458 81 7 0 chr11 30441193 30441502 -118341970 + AluSx SINE Alu 1 311 -1 412 327 34 92 chr11 30441999 30442326 -118341146 - L2 LINE L2 0 3272 2965 27 0 0 0 chr11 30443277 30443304 -118340168 + AT_rich Low_complexity Low_complexity 1 27 0 1969 196 65 11 chr11 30444269 30444712 -118338760 - MLT1C LTR MaLR 0 467 1 187 277 0 0 chr11 30444976 30445023 -118338449 - L2 LINE L2 -76 3237 3191 369 0 0 0 chr11 30445027 30445068 -118338404 + (CA)n Simple_repeat Simple_repeat 2 42 0 354 342 19 47 chr11 30445122 30445379 -118338093 - L2 LINE L2 -188 3084 2835 188 368 0 0 chr11 30445932 30446000 -118337472 + L2 LINE L2 3204 3271 -1 185 250 16 16 chr11 30448496 30448560 -118334912 - MIR SINE MIR -50 212 149 2586 174 41 85 chr11 30448571 30449233 -118334239 - LTR27 LTR ERV1 -1 635 3 1994 154 0 3 chr11 30449763 30450062 -118333410 - AluSx SINE Alu -14 298 1 21 0 0 0 chr11 30451662 30451683 -118331789 + AT_rich Low_complexity Low_complexity 1 21 0 440 332 81 36 chr11 30452494 30452741 -118330731 + MIR SINE MIR 5 262 0 182 309 18 0 chr11 30452765 30452820 -118330652 - MIR SINE MIR -110 152 97 493 268 21 21 chr11 30453931 30454073 -118329399 + MIR3 SINE MIR 62 203 -5 618 279 84 14 chr11 30454258 30454473 -118328999 + MIR SINE MIR 6 235 -27 269 358 7 29 chr11 30455131 30455268 -118328204 - L2 LINE L2 0 3313 3180 2353 167 43 17 chr11 30455370 30455960 -118327512 - MER39B LTR ERV1 0 653 10 552 305 79 0 chr11 30455973 30456150 -118327322 - L2 LINE L2 -250 3063 2873 1374 211 26 89 chr11 30456494 30456910 -118326562 + MLT1B LTR MaLR 1 390 0 568 0 28 0 chr11 30456914 30456986 -118326486 + (TCTA)n Simple_repeat Simple_repeat 2 75 0 273 342 0 0 chr11 30457471 30457547 -118325925 - MIR SINE MIR -3 259 184 348 319 30 0 chr11 30457548 30457683 -118325789 - MIR SINE MIR 0 262 124 1662 183 7 7 chr11 30457685 30457969 -118325503 + AluJb SINE Alu 1 284 -28 23 33 0 0 chr11 30457969 30457999 -118325473 + AT_rich Low_complexity Low_complexity 1 30 0 451 327 12 36 chr11 30458159 30458324 -118325148 - MIR3 SINE MIR -10 198 38 296 265 127 0 chr11 30460470 30460593 -118322879 + MIR SINE MIR 49 191 -71 350 248 46 0 chr11 30460604 30460713 -118322759 + L1ME4a LINE L1 5691 5804 -317 414 224 134 0 chr11 30460780 30460914 -118322558 + L1ME4a LINE L1 5969 6120 -1 362 271 171 0 chr11 30461064 30461193 -118322279 + MIR SINE MIR 56 206 -56 33 0 0 0 chr11 30461193 30461226 -118322246 + AT_rich Low_complexity Low_complexity 1 33 0 241 161 36 0 chr11 30461227 30461283 -118322189 - L1MA2 LINE L1 -7 6297 6240 27 0 0 0 chr11 30461317 30461344 -118322128 + AT_rich Low_complexity Low_complexity 1 27 0 222 91 0 0 chr11 30461412 30461445 -118322027 + (TTG)n Simple_repeat Simple_repeat 2 34 0 467 298 21 11 chr11 30461457 30461648 -118321824 + LTR37B LTR ERV1 6 198 -270 408 245 0 0 chr11 30461694 30461796 -118321676 + LTR37B LTR ERV1 198 299 -169 237 108 0 0 chr11 30461805 30461842 -118321630 + (TC)n Simple_repeat Simple_repeat 2 38 0 532 216 7 7 chr11 30461869 30462008 -118321464 + LTR37B LTR ERV1 330 468 0 3339 203 82 75 chr11 30462396 30463801 -118319671 + Charlie1a DNA MER1_type 7 1421 -34 214 266 16 16 chr11 30465114 30465178 -118318294 + MIR SINE MIR 196 259 -3 1323 189 19 19 chr11 30465883 30466142 -118317330 - AluJo SINE Alu -20 292 34 234 395 38 58 chr11 30466207 30466551 -118316921 + L2 LINE L2 2936 3272 0 183 382 49 10 chr11 30466893 30466995 -118316477 + MIR SINE MIR 89 194 -68 1324 297 109 20 chr11 30467020 30467724 -118315748 + L2 LINE L2 2381 3145 -168 529 253 163 44 chr11 30467749 30468069 -118315403 + MLT1I LTR MaLR 44 401 -8 604 289 6 25 chr11 30468090 30468249 -118315223 + L2 LINE L2 3158 3313 0 206 315 34 22 chr11 30468347 30468436 -118315036 - MIR SINE MIR -101 161 72 319 335 30 36 chr11 30468810 30468977 -118314495 + MIR SINE MIR 47 212 -50 443 284 97 17 chr11 30469179 30469355 -118314117 + MIR SINE MIR 3 192 -70 216 216 0 20 chr11 30469694 30469745 -118313727 + MIR SINE MIR 210 259 -3 242 271 0 17 chr11 30470268 30470327 -118313145 - MIR SINE MIR -6 256 199 33 25 0 0 chr11 30470670 30470710 -118312762 + AT_rich Low_complexity Low_complexity 1 40 0 24 32 0 0 chr11 30471492 30471523 -118311949 + AT_rich Low_complexity Low_complexity 1 31 0 213 265 124 19 chr11 30471873 30471976 -118311496 + MIR SINE MIR 55 177 -31 2566 253 118 55 chr11 30472805 30474055 -118309417 + L2 LINE L2 1928 3313 0 738 210 0 0 chr11 30475179 30475303 -118308169 + FLAM_A SINE Alu 1 124 -9 512 252 7 0 chr11 30476121 30476256 -118307216 - MIR3 SINE MIR -8 200 65 325 313 121 16 chr11 30477030 30477212 -118306260 - MIR SINE MIR -26 236 36 216 267 95 57 chr11 30477363 30477468 -118306004 - L2 LINE L2 -5 3308 3200 331 313 33 27 chr11 30477723 30477873 -118305599 - MIR SINE MIR -92 170 20 2037 134 0 3 chr11 30479153 30479445 -118304027 + AluSx SINE Alu 1 291 -21 235 429 0 0 chr11 30479903 30480008 -118303464 - L3 LINE CR1 -1278 299 195 304 261 0 11 chr11 30480560 30480648 -118302824 + GA-rich Low_complexity Low_complexity 1 87 0 444 306 81 86 chr11 30481390 30481811 -118301661 + L2 LINE L2 2827 3245 -27 365 267 87 7 chr11 30482613 30482685 -118300787 + MIR SINE MIR 83 148 -114 507 90 26 0 chr11 30482685 30482763 -118300709 - MADE1 DNA Mariner 0 80 1 365 267 87 7 chr11 30482763 30482840 -118300632 + MIR SINE MIR 148 244 -18 1327 102 14 19 chr11 30483320 30483535 -118299937 - Tigger1 DNA MER2_type 0 2418 2205 739 132 0 105 chr11 30483560 30483712 -118299760 - Tigger1 DNA MER2_type -2282 136 1 2303 104 0 7 chr11 30483809 30484108 -118299364 + AluSq SINE Alu 2 298 -15 1478 139 0 5 chr11 30484258 30484473 -118298999 - AluSq SINE Alu -63 250 37 212 279 139 13 chr11 30484969 30485048 -118298424 - MIR SINE MIR -2 260 172 1978 194 50 11 chr11 30485055 30485415 -118298057 + L1MB1 LINE L1 5687 6070 -98 1977 148 14 38 chr11 30485415 30485759 -118297713 - MER1B DNA MER1_type 0 337 2 1978 194 50 11 chr11 30485759 30485862 -118297610 + L1MB1 LINE L1 6070 6168 0 1856 161 0 7 chr11 30485887 30486178 -118297294 - AluSx SINE Alu -23 289 1 202 375 0 14 chr11 30486198 30486270 -118297202 - MIR SINE MIR -186 76 6 182 191 95 0 chr11 30486527 30486569 -118296903 - L2 LINE L2 -3 3310 3265 186 43 0 0 chr11 30487019 30487042 -118296430 + (A)n Simple_repeat Simple_repeat 1 23 0 2339 105 0 0 chr11 30487086 30487390 -118296082 + AluSx SINE Alu 1 304 -8 336 317 61 18 chr11 30488177 30488341 -118295131 + LTR16C LTR ERVL 98 268 -223 260 29 57 0 chr11 30489174 30489209 -118294263 - MLT2B2 LTR ERVL 0 520 484 279 0 0 0 chr11 30489220 30489251 -118294221 + (TG)n Simple_repeat Simple_repeat 2 32 0 227 200 0 17 chr11 30489254 30489314 -118294158 + (TA)n Simple_repeat Simple_repeat 1 59 0 13237 146 33 9 chr11 30489466 30490165 -118293307 + Tigger2 DNA MER2_type 357 1037 -1681 2419 71 0 0 chr11 30490165 30490460 -118293012 + AluY SINE Alu 3 297 -14 13237 146 33 9 chr11 30490460 30492063 -118291409 + Tigger2 DNA MER2_type 1037 2716 -2 1777 182 102 45 chr11 30492079 30492297 -118291175 - MLT2B2 LTR ERVL -50 465 261 240 35 0 0 chr11 30492297 30492326 -118291146 + (GA)n Simple_repeat Simple_repeat 2 30 0 1777 182 102 45 chr11 30492326 30492547 -118290925 - MLT2B2 LTR ERVL -254 261 1 181 238 307 0 chr11 30493316 30493417 -118290055 - MIR SINE MIR -94 168 37 248 311 0 27 chr11 30493733 30493807 -118289665 + L2 LINE L2 3242 3313 0 359 288 165 0 chr11 30495365 30495536 -118287936 + MIR SINE MIR 4 203 -59 739 176 38 19 chr11 30496005 30496164 -118287308 + MER5A DNA MER1_type 28 189 0 439 265 129 14 chr11 30496173 30496320 -118287152 - MIR SINE MIR -77 185 22 189 352 44 0 chr11 30496425 30496535 -118286937 + MIR SINE MIR 21 137 -71 204 129 0 0 chr11 30497174 30497205 -118286267 + MIR SINE MIR 119 149 -113 284 211 14 14 chr11 30497258 30497329 -118286143 + MER117 DNA MER1_type 22 92 -105 264 321 43 21 chr11 30497748 30497888 -118285584 + MIR SINE MIR 120 262 0 374 365 114 5 chr11 30500384 30500603 -118282869 - MIR SINE MIR -14 248 6 272 303 79 40 chr11 30502463 30502615 -118280857 + MIR3 SINE MIR 47 204 -4 21 57 0 0 chr11 30503324 30503359 -118280113 + AT_rich Low_complexity Low_complexity 1 35 0 734 275 75 10 chr11 30503410 30503610 -118279862 + MIR SINE MIR 42 254 -8 495 301 53 34 chr11 30503618 30504072 -118279400 - L1MC/D LINE L1 -332 5789 5305 220 305 17 17 chr11 30504245 30504304 -118279168 + L2 LINE L2 3245 3303 -10 423 0 0 0 chr11 30504371 30504418 -118279054 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 366 290 57 48 chr11 30506078 30506202 -118277270 + L2 LINE L2 3139 3263 -9 284 399 65 36 chr11 30506537 30506813 -118276659 - L2 LINE L2 0 3272 2989 22 0 0 0 chr11 30506823 30506845 -118276627 + AT_rich Low_complexity Low_complexity 1 22 0 375 353 0 0 chr11 30508323 30508445 -118275027 + MIR3 SINE MIR 33 154 -54 330 238 9 9 chr11 30508466 30508571 -118274901 - LTR67 LTR ERVL -25 532 428 273 277 31 17 chr11 30509049 30509153 -118274319 - MER5A DNA MER1_type -76 113 2 387 0 0 0 chr11 30509181 30509224 -118274248 + (CA)n Simple_repeat Simple_repeat 2 44 0 245 315 142 24 chr11 30510029 30510156 -118273316 + MIR SINE MIR 55 196 -66 194 103 0 26 chr11 30510203 30510242 -118273230 + (TTA)n Simple_repeat Simple_repeat 2 39 0 213 347 27 0 chr11 30510529 30510604 -118272868 - MIR3 SINE MIR -33 175 99 476 267 48 14 chr11 30510757 30510903 -118272569 - L2 LINE L2 -1 3312 3162 368 249 162 27 chr11 30511650 30511835 -118271637 + MIR SINE MIR 43 252 -10 1587 234 45 92 chr11 30512171 30512726 -118270746 - MER77 LTR ERV1 -8 597 69 212 277 0 0 chr11 30513138 30513185 -118270287 - L2 LINE L2 0 3313 3267 410 352 90 20 chr11 30513642 30513997 -118269475 - L2 LINE L2 -586 2728 2349 617 274 157 43 chr11 30514762 30515087 -118268385 + LTR33 LTR ERVL 1 362 -159 856 287 35 4 chr11 30515354 30515608 -118267864 - MIR SINE MIR 0 262 1 461 283 122 27 chr11 30515928 30516370 -118267102 + L1ME4a LINE L1 5565 6048 -73 209 324 73 59 chr11 30516761 30516897 -118266575 + MIR SINE MIR 55 192 -70 527 283 7 28 chr11 30516976 30517121 -118266351 + MIR3 SINE MIR 67 208 0 318 146 11 45 chr11 30517847 30517936 -118265536 + (CATA)n Simple_repeat Simple_repeat 3 88 0 233 335 42 12 chr11 30517978 30518101 -118265371 - MIR3 SINE MIR -51 157 59 181 338 15 0 chr11 30518830 30518898 -118264574 + L2 LINE L2 3204 3272 0 320 0 25 0 chr11 30519245 30519285 -118264187 + (GA)n Simple_repeat Simple_repeat 1 41 0 263 324 108 7 chr11 30519317 30519456 -118264016 + MLT1K LTR MaLR 422 574 -14 1666 167 18 7 chr11 30519630 30519911 -118263561 - AluJb SINE Alu 0 312 29 360 314 82 36 chr11 30520067 30520261 -118263211 + MIR SINE MIR 4 206 -56 229 208 57 0 chr11 30520315 30520368 -118263104 - L2 LINE L2 0 3272 3217 859 275 168 28 chr11 30520955 30521282 -118262190 - L2 LINE L2 -100 3213 2841 313 300 87 60 chr11 30521304 30521454 -118262018 + L2 LINE L2 3117 3270 -2 281 286 102 20 chr11 30522027 30522125 -118261347 - MIR3 SINE MIR -90 118 13 341 185 0 12 chr11 30524029 30524110 -118259362 + GA-rich Low_complexity Low_complexity 3 82 0 403 253 54 76 chr11 30524111 30524345 -118259127 + L1 LINE L1 2810 3042 -3104 21 36 0 0 chr11 30524362 30524390 -118259082 + AT_rich Low_complexity Low_complexity 1 28 0 330 239 42 2 chr11 30524400 30524517 -118258955 + L1 LINE L1 3856 3976 -2170 389 361 101 15 chr11 30524524 30525000 -118258472 + L1 LINE L1 4023 4539 -1607 1579 201 10 13 chr11 30525608 30525916 -118257556 - AluJo SINE Alu -5 307 1 367 310 41 55 chr11 30526090 30526361 -118257111 + MLT1J LTR MaLR 241 507 -4 211 321 38 0 chr11 30526386 30526439 -118257033 - L2 LINE L2 -78 3194 3140 198 191 0 0 chr11 30526580 30526627 -118256845 + (TATG)n Simple_repeat Simple_repeat 3 49 0 582 250 5 88 chr11 30528268 30528460 -118255012 - MER5B DNA MER1_type -2 176 1 31682 99 18 8 chr11 30528658 30534435 -118249037 - L1PA7 LINE L1 0 6469 648 10637 29 0 0 chr11 30534434 30535693 -118247779 - L1P LINE L1 -1031 5115 3857 * 1655 25 0 0 chr11 30535690 30535886 -118247586 + L1P LINE L1 5085 5280 -866 * 3816 123 30 14 chr11 30587056 30587647 -118195825 + LTR36 LTR ERV1 11 611 0 291 244 35 78 chr11 30587648 30587763 -118195709 + MIR SINE MIR 153 262 0 195 100 0 0 chr11 30587777 30587807 -118195665 + (TG)n Simple_repeat Simple_repeat 2 31 0 1210 157 113 8 chr11 30587838 30588006 -118195466 - MLT1A1 LTR MaLR -15 350 146 425 19 19 0 chr11 30588006 30588060 -118195412 + (GA)n Simple_repeat Simple_repeat 2 56 0 1210 157 113 8 chr11 30588060 30588139 -118195333 - MLT1A1 LTR MaLR -219 146 77 22 0 0 0 chr11 30588526 30588548 -118194924 + AT_rich Low_complexity Low_complexity 1 22 0 252 0 0 0 chr11 30589086 30589114 -118194358 + (TG)n Simple_repeat Simple_repeat 1 28 0 1422 214 7 14 chr11 30589114 30589395 -118194077 - AluJb SINE Alu -33 279 1 4114 32 8 0 chr11 30590094 30590591 -118192881 - L1PA3 LINE L1 0 6155 5655 290 239 30 0 chr11 30590693 30590728 -118192744 + MIR3 SINE MIR 127 159 -49 1051 219 5 22 chr11 30590728 30590952 -118192520 - MER58A DNA MER1_type -2 222 3 290 239 30 0 chr11 30590952 30590983 -118192489 + MIR3 SINE MIR 159 195 -13 487 219 42 17 chr11 30591719 30591838 -118191634 - MER20 DNA MER1_type 0 219 98 3629 24 2 17 chr11 30591962 30592377 -118191095 + SVA Other Other 978 1386 0 2375 148 29 19 chr11 30593746 30594166 -118189306 + MSTB LTR MaLR 1 424 -2 1206 227 24 34 chr11 30594175 30594614 -118188858 + MSTB-int LTR MaLR 15 448 -1287 255 152 0 0 chr11 30595428 30595474 -118187998 + (TG)n Simple_repeat Simple_repeat 1 46 0 715 182 57 0 chr11 30595530 30595689 -118187783 - L1MB2 LINE L1 -15 6156 5989 189 336 92 23 chr11 30595693 30595824 -118187648 - MIR SINE MIR -60 202 63 2595 49 3 0 chr11 30596936 30597244 -118186228 + AluY SINE Alu 3 311 0 4177 67 2 6 chr11 30597537 30598077 -118185395 + L1PA7 LINE L1 5604 6141 -13 734 302 88 0 chr11 30598106 30598391 -118185081 + L2 LINE L2 3004 3313 0 21 0 0 0 chr11 30599015 30599036 -118184436 + AT_rich Low_complexity Low_complexity 1 21 0 1716 107 0 4 chr11 30599476 30599701 -118183771 - AluY SINE Alu -49 262 39 4691 209 31 72 chr11 30599701 30600269 -118183203 - L1M2 LINE L1 -3957 2372 1782 1406 191 27 53 chr11 30600269 30600568 -118182904 - AluJo SINE Alu -19 293 3 4691 209 31 72 chr11 30600568 30601783 -118181689 - L1M2 LINE L1 -4547 1782 351 2370 203 20 34 chr11 30601902 30602315 -118181157 - L1 LINE L1 -2970 3176 2773 2510 62 0 0 chr11 30602315 30602620 -118180852 - AluY SINE Alu -6 305 1 2370 203 20 34 chr11 30602620 30602817 -118180655 - L1 LINE L1 -3373 2773 2575 208 156 0 22 chr11 30604764 30604809 -118178663 + L2 LINE L2 3270 3313 0 997 139 30 0 chr11 30604985 30605151 -118178321 + L1PA13 LINE L1 5989 6159 -4 5482 125 8 1 chr11 30605161 30606003 -118177469 + L1PA15 LINE L1 5318 6165 0 540 173 9 27 chr11 30606003 30606113 -118177359 + L1M3f LINE L1 90 197 -5131 282 222 25 25 chr11 30607103 30607184 -118176288 - MIR SINE MIR 0 262 182 1978 163 34 0 chr11 30607204 30607529 -118175943 + MER7A DNA MER2_type 1 334 -12 4749 202 28 8 chr11 30607630 30608809 -118174663 - L1 LINE L1 -2763 3383 2182 701 88 0 0 chr11 30608810 30608901 -118174571 - AluY SINE Alu -13 298 208 373 233 12 0 chr11 30609298 30609384 -118174088 + MLT1I LTR MaLR 323 409 0 234 316 84 39 chr11 30609961 30610116 -118173356 + L2 LINE L2 2383 2544 -770 275 135 135 0 chr11 30610276 30610328 -118173144 + LTR18B LTR ERVL 530 588 -26 490 235 0 0 chr11 30611352 30611454 -118172018 + L2 LINE L2 2501 2602 -712 625 283 161 18 chr11 30611523 30611852 -118171620 + L2 LINE L2 2890 3265 -48 2467 67 29 0 chr11 30612073 30612417 -118171055 - L1P LINE L1 -2452 3694 3341 238 290 0 0 chr11 30612549 30612611 -118170861 + L2 LINE L2 3204 3265 -7 2603 10 3 0 chr11 30613684 30613976 -118169496 - AluYb8 SINE Alu -25 293 1 244 275 194 31 chr11 30614249 30614409 -118169063 + L2 LINE L2 2304 2489 -825 308 287 54 39 chr11 30615181 30615310 -118168162 - L2 LINE L2 -4 3268 3138 2477 76 3 10 chr11 30617045 30617359 -118166113 + AluSx SINE Alu 1 312 0 261 296 26 78 chr11 30617370 30617485 -118165987 + MER5A DNA MER1_type 12 120 -69 480 187 88 0 chr11 30618010 30618101 -118165371 - L2 LINE L2 -5 3308 3210 228 111 0 0 chr11 30618119 30618155 -118165317 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 225 0 0 0 chr11 30618771 30618796 -118164676 + (A)n Simple_repeat Simple_repeat 1 25 0 475 285 96 22 chr11 30620404 30620674 -118162798 + HERVL LTR ERVL 2244 2533 -3231 481 287 8 8 chr11 30621343 30621465 -118162007 + L2 LINE L2 3187 3308 -5 269 201 176 31 chr11 30622665 30622824 -118160648 + L1ME4a LINE L1 5939 6120 -1 6373 21 9 3 chr11 30623481 30624226 -118159246 - L1PA3 LINE L1 0 6155 5406 28 29 0 0 chr11 30624511 30624546 -118158926 + AT_rich Low_complexity Low_complexity 1 35 0 282 324 71 40 chr11 30624597 30624822 -118158650 + LTR16A LTR ERVL 210 441 -9 304 371 46 19 chr11 30624862 30625121 -118158351 - L2 LINE L2 -1 3312 3047 3804 164 22 47 chr11 30625142 30625972 -118157500 - L1PA16 LINE L1 -1 6165 5357 2122 126 3 3 chr11 30625980 30626282 -118157190 - AluSg SINE Alu 0 310 9 1629 98 4 0 chr11 30626421 30626666 -118156806 - L1PA16 LINE L1 -1412 4734 4489 * 2422 64 19 2 chr11 30626665 30627163 -118156309 + L1P3 LINE L1 5027 5530 -624 9187 57 6 1 chr11 30627231 30629161 -118154311 - L1PA5 LINE L1 0 6154 4200 337 339 55 27 chr11 30629297 30629589 -118153883 + HERVL LTR ERVL 4741 5040 -614 2483 78 0 0 chr11 30629916 30630224 -118153248 - AluY SINE Alu -3 308 1 341 256 25 16 chr11 30630346 30630467 -118153005 + LTR67 LTR ERVL 436 557 0 469 310 101 10 chr11 30630469 30630687 -118152785 + MIR SINE MIR 10 249 -13 296 294 63 16 chr11 30630990 30631116 -118152356 - MIR SINE MIR -7 255 124 331 294 127 0 chr11 30631122 30631248 -118152224 + L2 LINE L2 3171 3312 -1 811 246 132 60 chr11 30631487 30631966 -118151506 - MLT1H1 LTR MaLR -34 521 9 8866 109 14 2 chr11 30632633 30633965 -118149507 - THE1B-int LTR MaLR -231 1349 2 2167 127 19 32 chr11 30633966 30634335 -118149137 - THE1B LTR MaLR 0 364 1 30 52 0 39 chr11 30636878 30636955 -118146517 + AT_rich Low_complexity Low_complexity 1 74 0 912 199 140 8 chr11 30637341 30637577 -118145895 - MLT1C LTR MaLR -1 466 200 337 205 13 0 chr11 30637796 30637874 -118145598 + L1 LINE L1 3606 3684 -2462 31750 42 34 2 chr11 30637874 30642056 -118141416 + L1P LINE L1 1 4317 -1829 515 68 0 0 chr11 30642156 30642230 -118141242 + L1PA2 LINE L1 6078 6151 -4 4734 134 17 1 chr11 30643187 30643965 -118139507 + L1PA16 LINE L1 5375 6164 -2 280 288 83 45 chr11 30644102 30644234 -118139238 - L2 LINE L2 -5 3308 3172 1177 200 17 30 chr11 30644474 30644830 -118138642 - MLT1E3 LTR MaLR 0 624 215 512 355 105 4 chr11 30645232 30645460 -118138012 - MIR SINE MIR -11 251 1 412 318 43 27 chr11 30645542 30645745 -118137727 - MIR SINE MIR -34 174 17 691 286 47 82 chr11 30646500 30646905 -118136567 - L2 LINE L2 -2 3311 2921 249 281 35 0 chr11 30647116 30647173 -118136299 - L2 LINE L2 -2 3270 3212 1906 161 35 35 chr11 30647175 30647731 -118135741 - MLT2A2 LTR ERVL 0 554 1 407 326 20 0 chr11 30647788 30647935 -118135537 - MER117 DNA MER1_type -1 196 47 462 252 187 48 chr11 30647957 30648187 -118135285 + MLT1H LTR MaLR 286 547 -2 544 252 75 37 chr11 30649574 30649788 -118133684 + MLT1H LTR MaLR 215 436 -113 2466 115 11 19 chr11 30650120 30650494 -118132978 - THE1C LTR MaLR -4 371 1 672 321 4 53 chr11 30650890 30651155 -118132317 - MIR SINE MIR -8 254 3 181 217 145 58 chr11 30651175 30651244 -118132228 + L2 LINE L2 3239 3313 0 197 33 33 0 chr11 30651326 30651356 -118132116 + (CAAAA)n Simple_repeat Simple_repeat 1 31 0 285 258 40 48 chr11 30651745 30651869 -118131603 - MIR SINE MIR -13 249 127 1684 137 33 22 chr11 30652143 30652414 -118131058 + AluSx SINE Alu 30 303 -9 192 224 41 20 chr11 30653032 30653081 -118130391 + L3 LINE CR1 1524 1573 -4 209 278 143 16 chr11 30653689 30653815 -118129657 + MIR3 SINE MIR 31 172 -36 303 242 56 0 chr11 30655335 30655496 -118127976 + (TA)n Simple_repeat Simple_repeat 2 171 0 237 360 147 0 chr11 30656563 30656699 -118126773 - L2 LINE L2 0 3272 3117 868 241 44 31 chr11 30658859 30659087 -118124385 - MIR SINE MIR 0 262 32 1016 167 18 27 chr11 30659093 30659315 -118124157 + L1MA9 LINE L1 6076 6295 -17 348 356 12 19 chr11 30660301 30660461 -118123011 - MIR3 SINE MIR -9 199 41 227 305 148 45 chr11 30660706 30660929 -118122543 + L2 LINE L2 3046 3291 -22 921 142 98 16 chr11 30662653 30662836 -118120636 + MER20 DNA MER1_type 1 198 -21 791 334 89 5 chr11 30662958 30663395 -118120077 - L2 LINE L2 -862 2452 1979 348 302 126 6 chr11 30663784 30663966 -118119506 - L1ME LINE L1 -312 5809 5606 207 0 0 0 chr11 30664055 30664078 -118119394 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5893 111 18 0 chr11 30664096 30665287 -118118185 - L1PA10 LINE L1 -14 6154 4950 6849 120 31 39 chr11 30665287 30665840 -118117632 + L1P LINE L1 3711 4267 -1879 539 56 0 0 chr11 30665840 30665911 -118117561 - L1PA5 LINE L1 -2 6152 6082 6849 120 31 39 chr11 30665911 30666539 -118116933 + L1P LINE L1 4267 4883 -1263 381 248 19 9 chr11 30666788 30666893 -118116579 + MER103 DNA DNA 59 164 -2 200 341 65 49 chr11 30667225 30667348 -118116124 + MIR SINE MIR 20 144 -64 * 207 233 0 0 chr11 30667324 30667367 -118116105 + L2 LINE L2 3228 3270 -2 2083 171 0 9 chr11 30667753 30668103 -118115369 + MLT1A1 LTR MaLR 1 347 -18 352 320 78 0 chr11 30669016 30669144 -118114328 - MIR SINE MIR -80 182 45 571 197 0 66 chr11 30669160 30669297 -118114175 + MER21B LTR ERV1 678 805 -58 234 312 78 0 chr11 30669324 30669401 -118114071 - L2 LINE L2 -242 3030 2948 1710 147 17 10 chr11 30669420 30669713 -118113759 + L1PB4 LINE L1 5848 6142 -14 36 40 0 0 chr11 30669731 30669781 -118113691 + AT_rich Low_complexity Low_complexity 1 50 0 185 211 0 0 chr11 30671654 30671692 -118111780 + L2 LINE L2 3272 3309 -4 22 56 0 0 chr11 30672072 30672108 -118111364 + AT_rich Low_complexity Low_complexity 1 36 0 1557 100 0 0 chr11 30672510 30672730 -118110742 - L1P LINE L1 -1103 5043 4824 4397 179 8 4 chr11 30672870 30673799 -118109673 - L1P4 LINE L1 -702 5466 4534 497 159 18 106 chr11 30673800 30673913 -118109559 - L1M3f LINE L1 -5225 103 1 8634 221 52 21 chr11 30674031 30676719 -118106753 + L1MB2 LINE L1 2092 4852 -1530 4486 47 0 0 chr11 30676719 30677274 -118106198 - L1PA4 LINE L1 0 6155 5601 * 7521 29 6 56 chr11 30677270 30678879 -118104593 - L1PA3 LINE L1 -1 6154 4589 11631 36 1 0 chr11 30678980 30680392 -118103080 - L1PA4 LINE L1 -843 5303 3891 5758 43 3 0 chr11 30680391 30681113 -118102359 + L1P LINE L1 4667 5390 -756 * 2909 181 77 25 chr11 30681113 30682258 -118101214 + L1MB2 LINE L1 4843 6065 -342 1996 237 68 18 chr11 30682258 30682756 -118100716 - MLT1F LTR MaLR -18 524 2 219 114 0 0 chr11 30682869 30682904 -118100568 + (TG)n Simple_repeat Simple_repeat 2 36 0 1249 148 0 6 chr11 30683300 30683482 -118099990 + AluJb SINE Alu 109 289 -23 909 260 74 7 chr11 30683493 30683789 -118099683 + L1MC4 LINE L1 7539 7854 -188 510 239 24 0 chr11 30683797 30683939 -118099533 + L1MC4 LINE L1 7908 8042 0 523 323 32 0 chr11 30684422 30684580 -118098892 - MIR SINE MIR -48 214 52 760 281 80 21 chr11 30684831 30685204 -118098268 + L1ME2 LINE L1 5531 5925 -196 1792 300 60 16 chr11 30685210 30685943 -118097529 - L2 LINE L2 -602 2712 1948 729 246 31 0 chr11 30685996 30686187 -118097285 + L1ME2 LINE L1 5959 6155 -9 228 203 14 0 chr11 30686206 30686275 -118097197 + L1ME4a LINE L1 6051 6120 -1 22 35 0 0 chr11 30687798 30687827 -118095645 + AT_rich Low_complexity Low_complexity 1 29 0 949 121 54 13 chr11 30687836 30687985 -118095487 + AluSg/x SINE Alu 69 223 -87 648 174 9 9 chr11 30688154 30688269 -118095203 - MER33 DNA MER1_type -208 116 2 215 283 0 0 chr11 30688385 30688438 -118095034 + (TG)n Simple_repeat Simple_repeat 1 53 0 348 319 0 25 chr11 30688441 30688560 -118094912 - MIR SINE MIR -11 251 136 450 146 0 0 chr11 30688845 30688927 -118094545 + (TG)n Simple_repeat Simple_repeat 1 82 0 246 128 0 26 chr11 30688944 30688983 -118094489 + LTR67 LTR ERVL 520 557 0 181 67 0 33 chr11 30689360 30689390 -118094082 + L2 LINE L2 3284 3312 -1 413 228 9 0 chr11 30689517 30689632 -118093840 + L1MA4A LINE L1 6042 6278 0 224 313 227 49 chr11 30690627 30690790 -118092682 + L2 LINE L2 3077 3268 -4 205 250 45 0 chr11 30691154 30691198 -118092274 - L2 LINE L2 -86 3186 3141 44 56 0 0 chr11 30691221 30691293 -118092179 + AT_rich Low_complexity Low_complexity 1 72 0 279 382 47 12 chr11 30691959 30692129 -118091343 + MIR SINE MIR 59 234 -28 229 290 0 43 chr11 30692855 30692948 -118090524 + MIR SINE MIR 13 101 -161 21 0 0 0 chr11 30693000 30693021 -118090451 + AT_rich Low_complexity Low_complexity 1 21 0 251 330 125 0 chr11 30694428 30694516 -118088956 - L2 LINE L2 -18 3254 3156 777 298 86 58 chr11 30694697 30695860 -118087612 - L1MC/D LINE L1 -747 5399 4441 282 319 135 38 chr11 30695995 30696180 -118087292 + MIR SINE MIR 48 250 -12 1545 167 14 22 chr11 30696796 30697072 -118086400 - AluJo SINE Alu -33 279 6 180 0 0 0 chr11 30697149 30697169 -118086303 + (A)n Simple_repeat Simple_repeat 1 20 0 219 284 108 54 chr11 30697245 30697319 -118086153 - L2 LINE L2 -47 3225 3148 401 225 148 0 chr11 30697467 30697609 -118085863 - MER103 DNA DNA -3 163 1 223 274 89 59 chr11 30697685 30697820 -118085652 - MIR SINE MIR -54 208 70 224 310 35 23 chr11 30698846 30698933 -118084539 + L2 LINE L2 2915 3002 -270 29 28 0 0 chr11 30698965 30699001 -118084471 + AT_rich Low_complexity Low_complexity 1 36 0 1193 151 9 41 chr11 30700362 30700581 -118082891 - THE1B LTR MaLR 0 364 153 1652 143 66 3 chr11 30700686 30700972 -118082500 - AluSx SINE Alu -5 307 4 815 138 75 13 chr11 30700982 30701141 -118082331 - MLT1C LTR MaLR -293 174 6 24 32 0 0 chr11 30702284 30702315 -118081157 + AT_rich Low_complexity Low_complexity 1 31 0 821 294 68 14 chr11 30703466 30703977 -118079495 + L1MEc LINE L1 1243 1781 -4615 3411 188 29 28 chr11 30703989 30704804 -118078668 + L1M4 LINE L1 4459 5274 -872 729 118 7 138 chr11 30706706 30706858 -118076614 + AluJb SINE Alu 2 133 -179 261 0 0 0 chr11 30706861 30706890 -118076582 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 1088 130 0 7 chr11 30706901 30707055 -118076417 + AluJb SINE Alu 134 286 -26 22 0 0 0 chr11 30707055 30707077 -118076395 + AT_rich Low_complexity Low_complexity 1 22 0 237 333 0 30 chr11 30707365 30707464 -118076008 - L2 LINE L2 -23 3249 3154 367 359 72 18 chr11 30707742 30707866 -118075606 + L2 LINE L2 3097 3234 -38 521 275 41 18 chr11 30707866 30708037 -118075435 + MER5B DNA MER1_type 3 177 -1 367 359 72 18 chr11 30708037 30708079 -118075393 + L2 LINE L2 3234 3272 0 7974 128 42 19 chr11 30708443 30710503 -118072969 + L1PA11 LINE L1 4068 6172 -2 223 376 86 0 chr11 30710503 30710596 -118072876 - MIR SINE MIR -160 102 2 360 349 53 68 chr11 30710615 30711239 -118072233 - L2 LINE L2 -5 3267 2638 10059 166 20 9 chr11 30712443 30716266 -118067206 - L1MA3 LINE L1 -5 7719 3864 6342 132 20 83 chr11 30716266 30718056 -118065416 - L1MA3 LINE L1 -4927 2638 17 386 315 82 0 chr11 30719378 30719524 -118063948 - MER117 DNA MER1_type 0 197 40 295 259 0 0 chr11 30719992 30720046 -118063426 + Zaphod DNA AcHobo 7 60 -3971 2020 296 41 16 chr11 30720071 30720653 -118062819 + MER115 DNA AcHobo 97 693 0 346 317 16 0 chr11 30720653 30720775 -118062697 + LTR67 LTR ERVL 434 557 0 409 254 106 42 chr11 30720935 30721077 -118062395 + MIR3 SINE MIR 13 163 -45 878 296 90 23 chr11 30722136 30722568 -118060904 + LTR33A LTR ERVL 61 521 -2 7636 196 45 18 chr11 30723685 30725572 -118057900 - L1 LINE L1 -1146 5000 3062 489 201 223 7 chr11 30726224 30726363 -118057109 + L1ME2 LINE L1 5959 6127 -37 408 229 83 19 chr11 30726410 30726567 -118056905 + MER113 DNA MER1_type? 186 352 -169 3068 228 123 19 chr11 30726778 30727296 -118056176 + L1MC4 LINE L1 6460 6923 -1119 498 17 0 0 chr11 30727296 30727355 -118056117 + (CATA)n Simple_repeat Simple_repeat 2 60 0 3068 228 123 19 chr11 30727355 30727374 -118056098 + L1MC4 LINE L1 6923 6939 -1103 1708 174 10 17 chr11 30727374 30727667 -118055805 + AluJo SINE Alu 9 299 -13 3068 228 123 19 chr11 30727667 30728137 -118055335 + L1MC4 LINE L1 6939 7573 -469 312 304 54 34 chr11 30728146 30728294 -118055178 - L2 LINE L2 -189 3083 2933 743 285 117 33 chr11 30728481 30728909 -118054563 - LTR16B LTR ERVL 0 464 1 2088 112 0 3 chr11 30730546 30730831 -118052641 + AluSx SINE Alu 1 284 -28 1017 165 93 43 chr11 30730959 30731238 -118052234 + MER33 DNA MER1_type 31 323 -1 194 306 202 40 chr11 30732163 30732287 -118051185 + L2 LINE L2 3129 3272 0 185 283 43 0 chr11 30733324 30733370 -118050102 - MIR3 SINE MIR -21 187 140 1800 182 3 0 chr11 30733473 30733781 -118049691 + AluJb SINE Alu 1 309 -3 266 261 84 25 chr11 30734366 30734485 -118048987 - MIR SINE MIR -27 235 110 311 229 83 37 chr11 30734550 30734659 -118048813 - HAL1b LINE L1 -1 1347 1234 6969 56 35 0 chr11 30734711 30735654 -118047818 - L1PA7 LINE L1 -2 6152 5195 709 261 78 41 chr11 30735918 30736263 -118047209 - HAL1b LINE L1 -383 965 608 544 271 32 64 chr11 30736409 30736752 -118046720 - L1MEd LINE L1 -4884 1235 904 275 257 80 62 chr11 30737230 30737343 -118046129 - L1MEd LINE L1 -5953 166 52 4436 219 141 19 chr11 30738231 30739298 -118044174 - Tigger3b DNA MER2_type -34 1197 1 439 258 7 161 chr11 30739872 30739941 -118043531 - MIR SINE MIR 0 262 184 1928 193 58 17 chr11 30739941 30740356 -118043116 - MSTB1 LTR MaLR 0 432 1 439 258 7 161 chr11 30740356 30740596 -118042876 - MIR SINE MIR -78 184 1 8050 205 12 5 chr11 30741079 30742808 -118040664 - L1 LINE L1 -1152 4994 3254 701 306 60 81 chr11 30742876 30743003 -118040469 + L3 LINE CR1 846 974 -603 2067 95 11 14 chr11 30743003 30743315 -118040157 + AluY SINE Alu 1 311 0 701 306 60 81 chr11 30743315 30743800 -118039672 + L3 LINE CR1 974 1446 -131 587 328 35 68 chr11 30744033 30744430 -118039042 + L1M4c LINE L1 423 806 -5497 348 190 0 0 chr11 30744604 30744662 -118038810 + L1M4c LINE L1 1088 1145 -5168 6968 64 1 6 chr11 30744662 30746403 -118037069 + L1PA7 LINE L1 4426 6153 -1 2598 213 56 18 chr11 30746424 30747160 -118036312 + L1M4c LINE L1 1109 1872 -4512 4814 237 46 7 chr11 30747166 30749692 -118033780 - L1MA4 LINE L1 0 6300 3670 4975 80 0 4 chr11 30749856 30750543 -118032929 - L1PA3 LINE L1 -2 6153 5470 24 0 0 0 chr11 30801397 30801421 -117982051 + AT_rich Low_complexity Low_complexity 1 24 0 216 377 28 0 chr11 30802194 30802300 -117981172 + MIR SINE MIR 32 140 -122 298 265 24 0 chr11 30802347 30802430 -117981042 + MER94 DNA DNA 1 85 -49 23134 37 0 0 chr11 30803942 30807346 -117976126 + L1PA3 LINE L1 2529 5932 -223 4700 30 0 0 chr11 30807446 30808003 -117975469 + L1PA4 LINE L1 5592 6148 -7 31 26 0 0 chr11 30808003 30808041 -117975431 + AT_rich Low_complexity Low_complexity 1 38 0 2267 89 3 16 chr11 30808109 30808424 -117975048 - AluY SINE Alu 0 311 1 635 115 35 0 chr11 30808701 30808814 -117974658 + L1MC3 LINE L1 6981 7097 -688 265 333 10 0 chr11 30808814 30808910 -117974562 + MLT1F1 LTR MaLR 35 131 -436 3090 165 26 14 chr11 30808910 30809414 -117974058 + L1MC3 LINE L1 7196 7709 -76 1937 188 11 6 chr11 30809414 30809776 -117973696 - MLT1A1 LTR MaLR 0 365 2 3090 165 26 14 chr11 30809776 30809853 -117973619 + L1MC3 LINE L1 7709 7784 -1 23 54 0 0 chr11 30809862 30809899 -117973573 + AT_rich Low_complexity Low_complexity 1 37 0 277 273 133 38 chr11 30810245 30810418 -117973054 + MIR SINE MIR 74 260 -2 1586 203 0 29 chr11 30810856 30811166 -117972306 + AluJo SINE Alu 1 301 -11 24 0 0 0 chr11 30811210 30811234 -117972238 + AT_rich Low_complexity Low_complexity 1 24 0 214 415 37 10 chr11 30811517 30811703 -117971769 - MIR SINE MIR -50 212 21 3870 119 38 2 chr11 30811982 30812593 -117970879 + MER41B LTR ERV1 3 635 0 27 29 0 0 chr11 30813399 30813433 -117970039 + AT_rich Low_complexity Low_complexity 1 34 0 193 365 135 17 chr11 30813679 30814035 -117969437 + L2 LINE L2 2579 2976 -338 1327 51 45 0 chr11 30814201 30814379 -117969093 + L1PA4 LINE L1 5970 6155 0 221 295 82 66 chr11 30814562 30814684 -117968788 + L2 LINE L2 3132 3255 -17 458 261 17 0 chr11 30815516 30815635 -117967837 + LTR67 LTR ERVL 435 555 -2 1956 148 3 0 chr11 30815882 30816180 -117967292 - AluSx SINE Alu -13 299 1 1548 157 52 7 chr11 30816638 30816944 -117966528 + L1MA7 LINE L1 4584 4903 -1243 4679 154 52 47 chr11 30817045 30818120 -117965352 + L1MA7 LINE L1 5197 6289 -2 207 0 0 0 chr11 30819108 30819131 -117964341 + (GA)n Simple_repeat Simple_repeat 2 24 0 1772 158 12 98 chr11 30819723 30820123 -117963349 + MER47A DNA MER2_type 1 366 0 503 314 64 36 chr11 30820448 30820668 -117962804 + MIR SINE MIR 29 254 -8 1541 154 11 0 chr11 30821284 30821550 -117961922 + AluSx SINE Alu 44 312 0 316 210 177 0 chr11 30821556 30821680 -117961792 + MER20B DNA MER1_type 516 661 -122 220 171 0 0 chr11 30822327 30822362 -117961110 + (TCCA)n Simple_repeat Simple_repeat 4 38 0 1683 202 55 3 chr11 30824524 30824871 -117958601 - MLT1A1 LTR MaLR 0 365 1 589 298 98 9 chr11 30825152 30825367 -117958105 - MIR SINE MIR 0 262 29 24 0 0 0 chr11 30825494 30825518 -117957954 + AT_rich Low_complexity Low_complexity 1 24 0 320 237 69 116 chr11 30825621 30825853 -117957619 + MER112 DNA MER1_type 3 223 -37 636 232 135 43 chr11 30825857 30826042 -117957430 - MIR SINE MIR -31 231 30 516 323 123 55 chr11 30826449 30827148 -117956324 + L2 LINE L2 2580 3308 -5 21 0 0 0 chr11 30827254 30827275 -117956197 + AT_rich Low_complexity Low_complexity 1 21 0 310 216 68 0 chr11 30828766 30828840 -117954632 + HAL1b LINE L1 397 475 -873 1049 169 143 19 chr11 30829024 30829324 -117954148 - MER61D LTR ERV1 -116 385 1 838 206 75 110 chr11 30829332 30829759 -117953713 - LTR8A LTR ERV1 -7 720 309 1364 167 4 25 chr11 30829790 30830074 -117953398 + AluJb SINE Alu 49 327 0 890 210 66 121 chr11 30830104 30830409 -117953063 - LTR8 LTR ERV1 -434 257 1 591 296 52 83 chr11 30830434 30830448 -117953024 - L2 LINE L2 -407 2907 2894 2202 169 47 45 chr11 30830448 30830956 -117952516 - LTR54 LTR ERV1 0 510 2 591 296 52 83 chr11 30830956 30831401 -117952071 - L2 LINE L2 -420 2894 2462 246 239 195 9 chr11 30831458 30831571 -117951901 - L2 LINE L2 -945 2369 2236 181 283 0 0 chr11 30832071 30832117 -117951355 - L2 LINE L2 -1081 2233 2188 296 370 75 72 chr11 30832212 30832504 -117950968 + L2 LINE L2 2976 3268 -4 32 0 0 0 chr11 30833699 30833731 -117949741 + AT_rich Low_complexity Low_complexity 1 32 0 33 0 0 0 chr11 30834010 30834043 -117949429 + AT_rich Low_complexity Low_complexity 1 33 0 216 266 38 13 chr11 30835273 30835352 -117948120 + L3b LINE CR1 1251 1331 -252 203 360 35 0 chr11 30835454 30835540 -117947932 - MIR SINE MIR -23 239 151 577 226 32 8 chr11 30835774 30835898 -117947574 + MER104 DNA Tc2 51 177 -3 468 240 96 0 chr11 30836028 30836174 -117947298 - MER103 DNA DNA 0 166 7 203 254 70 28 chr11 30837566 30837637 -117945835 + MIR SINE MIR 157 230 -32 224 300 57 23 chr11 30838980 30839074 -117944398 - MIR SINE MIR -65 143 62 661 202 9 0 chr11 30839461 30839570 -117943902 + MER2 DNA MER2_type 1 110 -235 3531 110 112 0 chr11 30839570 30840141 -117943331 - MER41B LTR ERV1 0 635 1 547 222 116 44 chr11 30840141 30840363 -117943109 + MER2 DNA MER2_type 107 344 -1 665 257 6 40 chr11 30841030 30841205 -117942267 + MIR SINE MIR 7 175 -87 318 293 81 8 chr11 30841229 30841352 -117942120 + MIR3 SINE MIR 54 185 -23 392 365 28 6 chr11 30841470 30841648 -117941824 + MIR SINE MIR 66 247 -15 371 245 147 31 chr11 30842554 30842717 -117940755 + MIR SINE MIR 81 262 0 526 32 0 0 chr11 30843926 30843989 -117939483 + MLT2A1 LTR ERVL 1 63 -381 21510 70 4 4 chr11 30843990 30846751 -117936721 + HERVL-A1 LTR ERVL 2893 5654 0 2345 134 36 41 chr11 30846756 30847197 -117936275 + MLT2A1 LTR ERVL 6 444 0 307 169 14 28 chr11 30847749 30847820 -117935652 - MER20B DNA MER1_type 0 783 714 22 35 0 0 chr11 30848170 30848199 -117935273 + AT_rich Low_complexity Low_complexity 1 29 0 218 292 28 14 chr11 30848751 30848823 -117934649 - L3b LINE CR1 -220 1363 1291 21 0 0 0 chr11 30849270 30849291 -117934181 + AT_rich Low_complexity Low_complexity 1 21 0 41478 59 3 0 chr11 30849909 30856048 -117927424 + L1PA5 LINE L1 1 6152 -2 391 336 116 21 chr11 30856076 30856543 -117926929 - L1M4 LINE L1 -1087 5059 4549 204 163 0 0 chr11 30856562 30856605 -117926867 + (TCCA)n Simple_repeat Simple_repeat 3 45 0 1068 206 123 8 chr11 30856605 30856848 -117926624 - AluJo SINE Alu -28 284 14 276 281 46 33 chr11 30856864 30857057 -117926415 - L1M4 LINE L1 -1594 4552 4357 2142 188 72 76 chr11 30857064 30857731 -117925741 + MER39 LTR ERV1 1 705 -2 409 336 93 53 chr11 30858083 30858278 -117925194 - L1M4 LINE L1 -2293 3853 3667 1785 154 31 0 chr11 30858278 30858564 -117924908 + AluJo SINE Alu 1 295 -17 409 336 93 53 chr11 30858564 30858657 -117924815 - L1M4 LINE L1 -2479 3667 3579 2444 69 0 0 chr11 30858657 30858961 -117924511 + AluY SINE Alu 1 304 -7 409 336 93 53 chr11 30858961 30859442 -117924030 - L1M4 LINE L1 -2567 3579 3052 318 295 57 26 chr11 30859502 30859669 -117923803 + MIR SINE MIR 37 206 -56 1558 143 68 11 chr11 30859813 30860092 -117923380 - MER2 DNA MER2_type -5 340 46 272 327 52 33 chr11 30860651 30860804 -117922668 - L3 LINE CR1 -206 1371 1216 25 0 0 0 chr11 30860888 30860913 -117922559 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr11 30861109 30861137 -117922335 + AT_rich Low_complexity Low_complexity 1 28 0 407 303 78 57 chr11 30861249 30861493 -117921979 - MIR SINE MIR -13 249 1 304 260 32 32 chr11 30861736 30861859 -117921613 + MIR SINE MIR 94 216 -46 581 330 54 12 chr11 30862068 30862401 -117921071 + L1MEc LINE L1 38 384 -6012 287 315 19 19 chr11 30862409 30862517 -117920955 - L2 LINE L2 -493 2821 2714 511 142 85 9 chr11 30863375 30863481 -117919991 - Charlie5 DNA MER1_type -173 2439 2326 446 196 18 9 chr11 30863559 30863671 -117919801 - Charlie5 DNA MER1_type -264 2348 2236 596 125 0 48 chr11 30863682 30863786 -117919686 - Charlie5 DNA MER1_type -2513 99 1 401 284 0 0 chr11 30863986 30864088 -117919384 - MIR SINE MIR -1 261 160 736 197 82 11 chr11 30864090 30864273 -117919199 - MER119 DNA MER1_type -11 572 377 1031 199 79 0 chr11 30864273 30864540 -117918932 - L1MA4 LINE L1 -14 6286 5999 1282 280 19 22 chr11 30864540 30864586 -117918886 - MER119 DNA MER1_type -190 393 348 1844 158 129 23 chr11 30864586 30864973 -117918499 + MSTA LTR MaLR 1 428 0 1282 280 19 22 chr11 30864973 30865294 -117918178 - MER119 DNA MER1_type -235 348 27 572 270 46 0 chr11 30865306 30865458 -117918014 - MIR SINE MIR -95 167 9 377 329 114 6 chr11 30865559 30865726 -117917746 + LTR33A LTR ERVL 1 185 -338 366 325 32 32 chr11 30865953 30866079 -117917393 - MER5A DNA MER1_type 0 189 64 208 174 22 0 chr11 30866098 30866144 -117917328 + (CAAA)n Simple_repeat Simple_repeat 3 49 0 611 238 66 7 chr11 30866597 30866748 -117916724 + MLT1G LTR MaLR 431 590 0 241 271 114 0 chr11 30868235 30868305 -117915167 - L2 LINE L2 -58 3214 3137 1070 241 49 82 chr11 30868528 30869026 -117914446 + L2 LINE L2 2632 3105 -208 2408 81 0 3 chr11 30869026 30869335 -117914137 - AluY SINE Alu -3 308 1 1070 241 49 82 chr11 30869335 30869536 -117913936 + L2 LINE L2 3105 3311 -2 803 291 116 54 chr11 30870537 30870960 -117912512 - L2 LINE L2 -1 3312 2864 1944 292 102 34 chr11 30870978 30871830 -117911642 - L2 LINE L2 -580 2734 1825 17276 61 0 4 chr11 30871830 30874027 -117909445 + L1M4c LINE L1 4 2188 -3960 16642 30 0 0 chr11 30874027 30876783 -117906689 + L1PA3 LINE L1 3400 6155 0 17276 61 0 4 chr11 30876783 30876796 -117906676 + L1M4c LINE L1 2188 2200 -3948 191 156 0 0 chr11 30876799 30876831 -117906641 - L2 LINE L2 -1496 1818 1787 902 243 52 29 chr11 30878108 30878452 -117905020 + HUERS-P3b LTR ERV1 268 558 -2530 1268 179 51 72 chr11 30878469 30878779 -117904693 + HUERS-P3b LTR ERV1 289 887 -4783 12626 173 27 47 chr11 30878782 30881906 -117901566 + HUERS-P3b LTR ERV1 615 3801 -3195 2301 109 37 3 chr11 30881906 30882256 -117901216 - THE1B LTR MaLR 0 364 3 12626 173 27 47 chr11 30882256 30883903 -117899569 + HUERS-P3b LTR ERV1 3801 6994 -2 1633 179 41 24 chr11 30883906 30884327 -117899145 + MER61D LTR ERV1 1 501 0 1835 254 105 10 chr11 30884508 30885003 -117898469 - MLT1F LTR MaLR 0 542 1 24 0 0 0 chr11 30886045 30886069 -117897403 + AT_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr11 30886917 30886937 -117896535 + (A)n Simple_repeat Simple_repeat 1 20 0 877 254 117 35 chr11 30887366 30887709 -117895763 + MER20B DNA MER1_type 85 455 -328 281 250 0 71 chr11 30887692 30887776 -117895696 - MER20B DNA MER1_type -239 544 467 * 1633 191 3 7 chr11 30888112 30888411 -117895061 - AluJb SINE Alu -14 298 1 2058 146 0 0 chr11 30888729 30889031 -117894441 + AluSx SINE Alu 1 302 -10 24 0 0 0 chr11 30889435 30889459 -117894013 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr11 30890076 30890105 -117893367 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr11 30890657 30890688 -117892784 + AT_rich Low_complexity Low_complexity 1 31 0 573 183 100 8 chr11 30890988 30891108 -117892364 + MLT1A1 LTR MaLR 224 354 -11 229 323 0 15 chr11 30891224 30891289 -117892183 - L3b LINE CR1 -24 1559 1496 556 349 48 63 chr11 30891318 30891779 -117891693 + L2 LINE L2 2817 3270 -2 603 259 48 120 chr11 30891942 30892316 -117891156 - L2 LINE L2 -9 3304 2958 237 180 0 0 chr11 30895834 30895884 -117887588 + (TA)n Simple_repeat Simple_repeat 1 50 0 399 41 0 0 chr11 30896066 30896115 -117887357 + (CA)n Simple_repeat Simple_repeat 2 50 0 332 279 98 0 chr11 30897132 30897254 -117886218 - L2 LINE L2 -12 3301 3168 1447 150 28 0 chr11 30897302 30897556 -117885916 + L1MA3 LINE L1 6045 6305 0 359 103 8 239 chr11 30897855 30897972 -117885500 - MER63 DNA MER1_type -346 716 1 1093 69 0 0 chr11 30898187 30898317 -117885155 + AluY SINE Alu 1 130 -181 454 308 186 22 chr11 30899008 30899326 -117884146 - L2 LINE L2 0 3313 2944 621 260 42 16 chr11 30899433 30899640 -117883832 - MIR SINE MIR 0 262 51 336 194 0 0 chr11 30900040 30900112 -117883360 + L1MB7 LINE L1 6097 6168 -16 787 258 127 0 chr11 30901926 30902155 -117881317 - MIR SINE MIR 0 262 5 826 118 0 0 chr11 30902704 30902823 -117880649 + AluY SINE Alu 189 307 -4 180 0 0 0 chr11 30903517 30903537 -117879935 + (TA)n Simple_repeat Simple_repeat 2 21 0 240 277 0 0 chr11 30903537 30903620 -117879852 - L1MC4 LINE L1 -1339 6703 6621 697 236 0 35 chr11 30903880 30904054 -117879418 + FRAM SINE Alu 1 165 -11 314 206 0 32 chr11 30904311 30904374 -117879098 - MIR SINE MIR -200 62 2 347 171 0 14 chr11 30904780 30904850 -117878622 - MLT2D LTR ERVL -48 366 298 429 156 0 0 chr11 30904851 30904928 -117878544 + (TG)n Simple_repeat Simple_repeat 2 78 0 205 292 0 0 chr11 30904928 30904976 -117878496 + (CATATA)n Simple_repeat Simple_repeat 2 49 0 2348 142 32 48 chr11 30904978 30905264 -117878208 + Tigger2a DNA MER2_type 4 282 -2426 2379 94 3 0 chr11 30905264 30905571 -117877901 + AluSp SINE Alu 5 312 -1 2348 142 32 48 chr11 30905571 30905722 -117877750 + Tigger2a DNA MER2_type 282 434 0 2340 170 43 30 chr11 30905953 30906067 -117877405 + L1MB7 LINE L1 5565 5676 -508 2197 123 0 0 chr11 30906067 30906367 -117877105 + AluSx SINE Alu 1 300 -12 2340 170 43 30 chr11 30906367 30906758 -117876714 + L1MB7 LINE L1 5676 6077 -107 1003 154 6 0 chr11 30906771 30906933 -117876539 - Tigger5 DNA MER2_type 0 2323 2161 372 226 47 19 chr11 30908842 30908948 -117874524 + MIR SINE MIR 118 226 -36 197 276 52 0 chr11 30909270 30909328 -117874144 + L2 LINE L2 3187 3247 -66 2053 125 0 0 chr11 30911375 30911664 -117871808 - AluSx SINE Alu -23 289 1 198 0 0 0 chr11 30911779 30911801 -117871671 + (T)n Simple_repeat Simple_repeat 1 22 0 230 254 45 0 chr11 30912147 30912214 -117871258 - L2 LINE L2 -527 2787 2718 453 299 41 46 chr11 30912350 30912544 -117870928 + MIR SINE MIR 70 262 0 472 185 69 23 chr11 30912696 30912928 -117870544 + L1MA9 LINE L1 5953 6290 -22 460 276 77 57 chr11 30913021 30913267 -117870205 + MIR SINE MIR 12 262 0 499 262 117 0 chr11 30913565 30913710 -117869762 - L2 LINE L2 0 3313 3152 277 300 11 22 chr11 30913968 30914058 -117869414 - MIR3 SINE MIR -4 204 116 938 183 113 5 chr11 30914127 30914340 -117869132 - MER46A DNA MER2_type 0 236 1 5291 82 25 8 chr11 30914917 30915670 -117867802 - MER4E LTR ERV1 0 766 1 347 225 12 150 chr11 30916073 30916233 -117867239 + MER20B DNA MER1_type 42 179 -604 387 223 97 0 chr11 30916355 30916458 -117867014 - MIR SINE MIR -66 196 84 601 270 207 11 chr11 30916724 30916994 -117866478 + L2 LINE L2 1675 1997 -1317 1496 240 150 39 chr11 30917076 30917707 -117865765 + L2 LINE L2 2286 3028 -285 3400 140 63 28 chr11 30917737 30918386 -117865086 - L1MA7 LINE L1 0 6291 5620 269 139 0 14 chr11 30918442 30918514 -117864958 + (TTTTTG)n Simple_repeat Simple_repeat 1 71 0 221 210 16 0 chr11 30919162 30919224 -117864248 + (TATG)n Simple_repeat Simple_repeat 2 64 0 911 168 12 0 chr11 30920171 30920332 -117863140 + L1PA15 LINE L1 5995 6157 -8 487 144 22 0 chr11 30921146 30921236 -117862236 - AluY SINE Alu -1 310 219 1642 186 13 10 chr11 30921310 30921621 -117861851 - AluJo SINE Alu 0 312 1 226 323 125 69 chr11 30921752 30922127 -117861345 - L2 LINE L2 -19 3253 2858 227 313 73 21 chr11 30922400 30922496 -117860976 - L2 LINE L2 -932 2382 2282 1945 217 182 3 chr11 30922866 30923806 -117859666 - L1MC4 LINE L1 0 8042 6810 517 302 29 17 chr11 30924250 30924422 -117859050 - MER5B DNA MER1_type -3 175 2 417 280 37 0 chr11 30924868 30924975 -117858497 + MIR SINE MIR 34 144 -118 2376 63 7 0 chr11 30925234 30925535 -117857937 + AluY SINE Alu 1 303 -8 34 24 0 0 chr11 30926118 30926159 -117857313 + AT_rich Low_complexity Low_complexity 1 41 0 348 111 0 0 chr11 30926160 30926223 -117857249 + (TATG)n Simple_repeat Simple_repeat 2 64 0 602 139 19 28 chr11 30926243 30926351 -117857121 - AluJb SINE Alu -171 141 35 1982 155 155 3 chr11 30927659 30928040 -117855432 + Tigger3(Golem) DNA MER2_type 2 440 -2589 435 232 0 0 chr11 30928036 30928118 -117855354 + Tigger3(Golem) DNA MER2_type 2947 3028 -1 * 21 0 0 0 chr11 30929209 30929230 -117854242 + AT_rich Low_complexity Low_complexity 1 21 0 205 305 76 8 chr11 30929602 30929720 -117853752 + MIR3 SINE MIR 81 206 -2 1105 222 16 8 chr11 30929720 30929977 -117853495 - MIR SINE MIR -1 261 3 553 299 77 21 chr11 30930023 30930257 -117853215 - MIR SINE MIR -2 260 14 517 130 50 0 chr11 30930430 30930530 -117852942 + L1MA8 LINE L1 6186 6290 -1 26 0 0 0 chr11 30930580 30930606 -117852866 + AT_rich Low_complexity Low_complexity 1 26 0 217 286 38 8 chr11 30931332 30931465 -117852007 + (TA)n Simple_repeat Simple_repeat 1 137 0 22 94 0 0 chr11 30932484 30932548 -117850924 + AT_rich Low_complexity Low_complexity 1 64 0 2777 10 0 0 chr11 30932551 30932856 -117850616 - AluYa5 SINE Alu -6 305 1 213 356 30 10 chr11 30932978 30933079 -117850393 + MIR SINE MIR 35 137 -125 1640 274 114 28 chr11 30933138 30933588 -117849884 - L2 LINE L2 -43 3270 2860 2388 101 0 0 chr11 30933588 30933894 -117849578 - AluSq SINE Alu -7 306 1 1640 274 114 28 chr11 30933894 30934303 -117849169 - L2 LINE L2 -453 2860 2332 3593 33 0 0 chr11 30934303 30934725 -117848747 - L1PA4 LINE L1 -254 5901 5480 1793 60 13 0 chr11 30934725 30934957 -117848515 + L1PA4 LINE L1 5916 6152 -3 377 270 169 67 chr11 30934957 30935135 -117848337 - L2 LINE L2 -979 2335 2140 35 0 0 0 chr11 30935196 30935231 -117848241 + AT_rich Low_complexity Low_complexity 1 35 0 284 327 20 30 chr11 30935922 30936023 -117847449 - MIR3 SINE MIR -44 164 65 189 0 0 0 chr11 30936295 30936316 -117847156 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 233 281 209 22 chr11 30937645 30937784 -117845688 + L3 LINE CR1 1077 1241 -336 281 198 13 32 chr11 30938342 30938499 -117844973 + (TA)n Simple_repeat Simple_repeat 1 154 0 956 261 32 20 chr11 30938720 30938969 -117844503 + MIR SINE MIR 11 262 0 21 0 0 0 chr11 30939129 30939150 -117844322 + AT_rich Low_complexity Low_complexity 1 21 0 777 130 9 187 chr11 30939260 30939490 -117843982 + 7SK RNA RNA 5 193 0 23 0 0 0 chr11 30939799 30939822 -117843650 + AT_rich Low_complexity Low_complexity 1 23 0 651 326 81 54 chr11 30940198 30940679 -117842793 - L2 LINE L2 -6 3307 2814 408 292 178 0 chr11 30940659 30940844 -117842628 - L2 LINE L2 -641 2673 2456 * 16104 173 41 5 chr11 30940849 30943746 -117839726 + L1MA2 LINE L1 15 3017 -4548 11818 151 33 17 chr11 30943757 30944770 -117838702 + L1MA2 LINE L1 4250 5246 -2477 2234 90 3 0 chr11 30944770 30945060 -117838412 + AluSp SINE Alu 1 291 -22 11818 151 33 17 chr11 30945060 30947458 -117836014 + L1MA2 LINE L1 5246 7722 -1 1165 309 240 10 chr11 30947469 30948390 -117835082 - L2 LINE L2 -849 2465 1333 586 237 83 56 chr11 30948452 30948718 -117834754 + L2 LINE L2 3041 3313 0 470 322 260 12 chr11 30948729 30949148 -117834324 - L2 LINE L2 -2092 1222 700 4821 113 20 0 chr11 30950236 30950946 -117832526 + L1PA15 LINE L1 5333 6056 -109 5949 39 9 18 chr11 30951067 30951836 -117831636 + L1PA7 LINE L1 5389 6150 -4 23 0 0 0 chr11 30951836 30951859 -117831613 + AT_rich Low_complexity Low_complexity 1 23 0 261 260 73 21 chr11 30952129 30952225 -117831247 + MER113 DNA MER1_type? 421 521 0 453 340 19 12 chr11 30952246 30952408 -117831064 + MIR3 SINE MIR 32 194 -14 811 168 41 31 chr11 30952740 30952936 -117830536 - L1MC3 LINE L1 0 7785 7588 3811 172 46 62 chr11 30953067 30954036 -117829436 - LTR13 LTR ERVK 0 954 1 23 0 0 0 chr11 30954473 30954496 -117828976 + AT_rich Low_complexity Low_complexity 1 23 0 238 267 33 0 chr11 30954678 30954738 -117828734 + MIR SINE MIR 88 149 -113 1617 36 5 0 chr11 30954901 30955096 -117828376 + L1PA3 LINE L1 5958 6153 -2 27 0 0 0 chr11 30955096 30955123 -117828349 + AT_rich Low_complexity Low_complexity 1 27 0 326 294 35 63 chr11 30955315 30955458 -117828014 + MIR SINE MIR 48 186 -76 204 359 0 39 chr11 30955521 30955599 -117827873 - MIR SINE MIR -168 94 20 225 0 0 0 chr11 30955743 30955768 -117827704 + (A)n Simple_repeat Simple_repeat 1 25 0 275 333 18 35 chr11 30955769 30955883 -117827589 - MIR SINE MIR -79 129 18 235 270 11 34 chr11 30956113 30956202 -117827270 - MARNA DNA Mariner -470 116 30 347 252 179 0 chr11 30956504 30956627 -117826845 - MIR3 SINE MIR -18 190 46 203 338 0 14 chr11 30956989 30957063 -117826409 - MIR3 SINE MIR -1 207 135 347 325 138 42 chr11 30957878 30958263 -117825209 + L2 LINE L2 2435 2856 -458 272 333 12 12 chr11 30958400 30958484 -117824988 - L2 LINE L2 -27 3286 3203 6999 102 38 12 chr11 30958485 30959566 -117823906 + L1P LINE L1 3316 4424 -1722 209 261 62 0 chr11 30959749 30959814 -117823658 - MIR SINE MIR -11 251 183 459 261 57 40 chr11 30959859 30960035 -117823437 - MIR SINE MIR -76 186 8 357 257 37 59 chr11 30960138 30960196 -117823276 - MIR SINE MIR -13 249 191 2087 72 0 4 chr11 30960196 30960459 -117823013 + AluSq SINE Alu 36 297 -16 357 257 37 59 chr11 30960459 30960536 -117822936 - MIR SINE MIR -71 191 117 21 0 0 0 chr11 30962346 30962367 -117821105 + AT_rich Low_complexity Low_complexity 1 21 0 379 121 17 0 chr11 30962637 30962695 -117820777 + MIR SINE MIR 91 149 -113 25 20 0 59 chr11 30962781 30962832 -117820640 + AT_rich Low_complexity Low_complexity 1 48 0 5425 177 19 15 chr11 30963540 30965502 -117817970 + L1PB3 LINE L1 4184 6149 -5 29 28 0 0 chr11 30965533 30965569 -117817903 + AT_rich Low_complexity Low_complexity 1 36 0 2037 125 0 4 chr11 30965705 30965986 -117817486 + AluSq SINE Alu 1 280 -33 569 110 11 0 chr11 30965991 30966082 -117817390 + (GAAA)n Simple_repeat Simple_repeat 3 94 0 2426 123 80 5 chr11 30966601 30966999 -117816473 + MSTA LTR MaLR 1 428 0 391 288 23 11 chr11 30967183 30967360 -117816112 + L1M4 LINE L1 3278 3456 -2690 610 220 8 8 chr11 30967360 30967478 -117815994 - MER20 DNA MER1_type -2 217 100 1270 242 28 25 chr11 30967478 30967874 -117815598 + L1M4 LINE L1 3454 3850 -2296 26 0 0 0 chr11 30968271 30968297 -117815175 + AT_rich Low_complexity Low_complexity 1 26 0 274 146 0 0 chr11 30968917 30968965 -117814507 + L1M4 LINE L1 3650 3697 -2449 28 61 0 0 chr11 30968977 30969026 -117814446 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr11 30969906 30969928 -117813544 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 30971659 30971680 -117811792 + AT_rich Low_complexity Low_complexity 1 21 0 34 65 0 0 chr11 30972294 30972356 -117811116 + AT_rich Low_complexity Low_complexity 1 62 0 225 265 143 10 chr11 30972682 30972780 -117810692 - MIR SINE MIR -7 255 145 31 44 0 0 chr11 30973031 30973076 -117810396 + AT_rich Low_complexity Low_complexity 1 45 0 23 68 0 0 chr11 30973474 30973518 -117809954 + AT_rich Low_complexity Low_complexity 1 44 0 402 284 209 9 chr11 30973874 30974085 -117809387 + L2 LINE L2 1766 2018 -1296 269 213 75 32 chr11 30974132 30974226 -117809246 + L2 LINE L2 2268 2365 -949 24 32 0 0 chr11 30974258 30974289 -117809183 + AT_rich Low_complexity Low_complexity 1 31 0 366 335 25 19 chr11 30974299 30974460 -117809012 + L2 LINE L2 3152 3313 0 228 267 128 12 chr11 30974793 30974879 -117808593 - MIR SINE MIR -126 136 41 21 36 0 0 chr11 30974883 30974911 -117808561 + AT_rich Low_complexity Low_complexity 1 28 0 17800 92 2 2 chr11 30975612 30978945 -117804527 + L1PA7 LINE L1 2819 6152 -2 24 0 0 0 chr11 30978945 30978969 -117804503 + AT_rich Low_complexity Low_complexity 1 24 0 1560 261 87 10 chr11 30980197 30980715 -117802757 + L1ME2 LINE L1 5390 5947 -215 363 270 36 7 chr11 30980756 30980893 -117802579 + L1ME2 LINE L1 6024 6164 0 328 281 49 20 chr11 30981639 30981786 -117801686 + L1ME LINE L1 5506 5665 -456 197 200 0 22 chr11 30982463 30982508 -117800964 - MIR3 SINE MIR -54 154 111 450 315 50 35 chr11 30983305 30983505 -117799967 - MIR SINE MIR 0 262 60 739 266 116 10 chr11 30983623 30983830 -117799642 - MIR SINE MIR -21 241 13 39 68 0 0 chr11 30984017 30984091 -117799381 + AT_rich Low_complexity Low_complexity 1 74 0 239 272 25 12 chr11 30984276 30984357 -117799115 + L2 LINE L2 3146 3227 -86 21 57 0 0 chr11 30984890 30984925 -117798547 + AT_rich Low_complexity Low_complexity 1 35 0 237 65 0 0 chr11 30985254 30985285 -117798187 + (CATA)n Simple_repeat Simple_repeat 2 32 0 13764 139 32 20 chr11 30985286 30987674 -117795798 - Tigger1 DNA MER2_type 0 2418 1 309 245 123 0 chr11 30988203 30988309 -117795163 - MER103 DNA DNA -12 154 36 27 0 0 0 chr11 30989969 30989996 -117793476 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr11 30990980 30991008 -117792464 + AT_rich Low_complexity Low_complexity 1 28 0 2127 119 3 7 chr11 30991030 30991333 -117792139 - AluSx SINE Alu -10 302 1 372 317 8 0 chr11 30991384 30991504 -117791968 + L1MEd LINE L1 45 165 -5954 649 257 52 24 chr11 30991641 30991851 -117791621 - MER97a DNA MER1_type? -677 217 2 503 313 110 67 chr11 30991873 30992502 -117790970 + L1MEd LINE L1 300 955 -5164 595 267 100 9 chr11 30992504 30992714 -117790758 - MIR SINE MIR -15 247 19 394 246 113 50 chr11 30992732 30992972 -117790500 + L1MEd LINE L1 1003 1257 -4862 227 129 14 71 chr11 30993767 30993837 -117789635 + T-rich Low_complexity Low_complexity 2 67 0 362 202 8 17 chr11 30993847 30993939 -117789533 - AluY SINE Alu -116 185 130 836 244 51 28 chr11 30994277 30994531 -117788941 - MIR SINE MIR 0 262 3 237 214 36 0 chr11 30994824 30994880 -117788592 - MER117 DNA MER1_type -134 63 6 245 273 61 50 chr11 30996141 30996240 -117787232 - MIR SINE MIR -98 164 65 660 158 41 47 chr11 30996278 30996449 -117787023 - Charlie1b DNA MER1_type 0 523 354 217 182 23 34 chr11 30996470 30996558 -117786914 + (TAA)n Simple_repeat Simple_repeat 2 88 0 1074 196 53 78 chr11 30996570 30996891 -117786581 - Charlie1b DNA MER1_type -210 313 1 1306 171 3 89 chr11 30996901 30997228 -117786244 - AluJo SINE Alu -13 299 1 4190 62 2 7 chr11 30999540 31000086 -117783386 - L1PA8 LINE L1 -3 6169 5627 192 300 100 12 chr11 31000890 31000970 -117782502 + MIR SINE MIR 53 139 -123 468 0 0 0 chr11 31001154 31001206 -117782266 + (TATAA)n Simple_repeat Simple_repeat 5 56 0 435 141 47 0 chr11 31001999 31002084 -117781388 - L1MB3 LINE L1 -1 6182 6094 347 281 98 61 chr11 31002657 31002821 -117780651 - MIR3 SINE MIR -21 187 18 438 366 144 9 chr11 31002836 31003183 -117780289 + L2 LINE L2 2521 2914 -400 1018 75 0 0 chr11 31003380 31003514 -117779958 - L1PA6 LINE L1 -6 6148 6015 247 362 21 0 chr11 31003601 31003695 -117779777 - MIR3 SINE MIR -28 180 85 38 61 0 0 chr11 31004071 31004137 -117779335 + AT_rich Low_complexity Low_complexity 1 66 0 284 315 22 0 chr11 31004678 31004770 -117778702 - MIR3 SINE MIR -6 202 109 442 278 161 39 chr11 31004916 31005171 -117778301 - L2 LINE L2 -15 3298 3013 229 347 142 16 chr11 31006628 31006818 -117776654 + MIR SINE MIR 3 216 -46 2752 207 16 14 chr11 31006855 31007416 -117776056 - MER68 LTR ERV1 0 562 1 1707 174 10 3 chr11 31008257 31008556 -117774916 + AluJo SINE Alu 1 301 -11 270 248 97 69 chr11 31008561 31008706 -117774766 - MIR SINE MIR -66 196 48 1510 180 9 41 chr11 31009296 31009613 -117773859 - AluJo SINE Alu 0 312 6 187 225 0 25 chr11 31009656 31009696 -117773776 + L2 LINE L2 3184 3222 -91 229 240 17 6 chr11 31010129 31010223 -117773249 - L1MC/D LINE L1 -331 5790 5744 251 275 62 0 chr11 31010270 31010350 -117773122 - L1MC/D LINE L1 -474 5647 5563 2255 79 0 0 chr11 31010441 31010755 -117772717 - AluY SINE Alu 0 314 1 941 117 0 10 chr11 31011323 31011558 -117771914 + (C)n Simple_repeat Simple_repeat 1 414 0 223 227 133 27 chr11 31012251 31012326 -117771146 + L3 LINE CR1 1490 1572 -5 299 229 193 0 chr11 31012557 31012666 -117770806 + MIR3 SINE MIR 65 194 -14 246 337 81 45 chr11 31012968 31013004 -117770468 + L2 LINE L2 2655 2688 -626 180 0 0 0 chr11 31013004 31013024 -117770448 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 246 337 81 45 chr11 31013024 31013296 -117770176 + L2 LINE L2 2688 2974 -340 737 282 61 38 chr11 31013804 31014066 -117769406 + MLT1J LTR MaLR 1 268 -243 434 282 40 36 chr11 31014134 31014395 -117769077 + L2 LINE L2 2378 2956 -357 258 337 60 18 chr11 31014514 31014680 -117768792 - L2 LINE L2 -151 3162 2990 960 300 43 10 chr11 31014734 31015037 -117768435 - MLT1I LTR MaLR -51 358 46 316 250 39 16 chr11 31015337 31015465 -117768007 - L1ME LINE L1 -346 5775 5645 396 328 128 15 chr11 31015818 31016022 -117767450 + MIR SINE MIR 20 246 -16 195 100 0 0 chr11 31016653 31016683 -117766789 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 499 165 0 21 chr11 31016683 31016780 -117766692 + L1MB7 LINE L1 6071 6165 -19 211 328 0 0 chr11 31017316 31017377 -117766095 + L2 LINE L2 3211 3271 -1 23 33 0 0 chr11 31017898 31017928 -117765544 + AT_rich Low_complexity Low_complexity 1 30 0 292 354 77 19 chr11 31018560 31018871 -117764601 - MARNA DNA Mariner -169 417 89 391 300 78 18 chr11 31020354 31020800 -117762672 - L1MEc LINE L1 -4897 1487 1015 1533 155 77 19 chr11 31020836 31021159 -117762313 - MER2 DNA MER2_type -1 343 2 407 232 67 34 chr11 31021675 31021838 -117761634 - L1MEc LINE L1 -5905 467 194 1769 182 3 0 chr11 31022555 31022852 -117760620 + AluJb SINE Alu 1 298 -14 507 276 32 51 chr11 31022874 31023192 -117760280 - L1P1 LINE L1 -364 5757 5455 265 230 86 99 chr11 31023194 31023346 -117760126 - L1MC5 LINE L1 -52 7909 7760 1714 38 9 0 chr11 31023347 31023558 -117759914 + L1PA4 LINE L1 5943 6155 0 21 0 0 0 chr11 31023558 31023579 -117759893 + AT_rich Low_complexity Low_complexity 1 21 0 609 222 56 12 chr11 31023601 31023763 -117759709 + MER58 DNA MER1_type 20 188 -2232 320 160 80 60 chr11 31023842 31023942 -117759530 - L1MC5 LINE L1 -317 7644 7543 344 118 0 0 chr11 31023998 31024049 -117759423 - MADE1 DNA Mariner 0 80 30 2756 267 62 31 chr11 31024245 31025337 -117758135 - L2 LINE L2 -1 3312 2175 303 305 169 34 chr11 31025523 31026061 -117757411 - L1 LINE L1 -1134 5012 4402 23 68 0 0 chr11 31026133 31026177 -117757295 + AT_rich Low_complexity Low_complexity 1 44 0 25 31 0 0 chr11 31027900 31027932 -117755540 + AT_rich Low_complexity Low_complexity 1 32 0 185 378 104 7 chr11 31027944 31028079 -117755393 + L2 LINE L2 2610 2757 -557 530 304 18 27 chr11 31028661 31028881 -117754591 - L1ME LINE L1 -341 5780 5563 217 244 0 0 chr11 31029058 31029103 -117754369 + (CATATA)n Simple_repeat Simple_repeat 6 50 0 2188 121 0 6 chr11 31029869 31030182 -117753290 - AluSq SINE Alu 0 313 3 343 226 68 23 chr11 31030231 31030244 -117753228 - HAL1 LINE L1 -145 2362 2351 7748 13 23 0 chr11 31030244 31031170 -117752302 - L1PA3 LINE L1 0 6155 5228 343 226 68 23 chr11 31031170 31031289 -117752183 - HAL1 LINE L1 -156 2351 2224 37 23 0 0 chr11 31031435 31031479 -117751993 + AT_rich Low_complexity Low_complexity 1 44 0 25 0 0 0 chr11 31031960 31031985 -117751487 + AT_rich Low_complexity Low_complexity 1 25 0 635 266 180 46 chr11 31032623 31032973 -117750499 - HAL1 LINE L1 -1847 660 264 28 79 0 0 chr11 31033066 31033129 -117750343 + AT_rich Low_complexity Low_complexity 1 63 0 276 53 0 0 chr11 31033235 31033273 -117750199 + (TTTTTG)n Simple_repeat Simple_repeat 3 40 0 205 329 0 26 chr11 31033442 31033518 -117749954 + MIR SINE MIR 2 75 -187 866 313 133 17 chr11 31035178 31035866 -117747606 + L2 LINE L2 2551 3313 0 25 65 0 0 chr11 31036773 31036819 -117746653 + AT_rich Low_complexity Low_complexity 1 46 0 441 288 5 7 chr11 31037813 31037952 -117745520 - MIR SINE MIR -77 131 10 196 240 0 20 chr11 31038833 31038883 -117744589 - L2 LINE L2 -566 2748 2700 1232 190 132 29 chr11 31039351 31039662 -117743810 + MER2 DNA MER2_type 1 343 -1 336 193 12 0 chr11 31039784 31039867 -117743605 + L1PA16 LINE L1 6079 6162 -4 285 350 29 0 chr11 31041982 31042122 -117741350 + L1ME LINE L1 486 629 -5925 473 255 71 54 chr11 31042617 31042946 -117740526 + L1ME LINE L1 923 1457 -4968 10099 140 28 10 chr11 31042954 31045264 -117738208 - L1MA3 LINE L1 -1 6304 3939 22349 41 0 0 chr11 31045264 31048794 -117734678 - L1PA5 LINE L1 -4 6150 2619 10099 140 28 10 chr11 31048794 31049294 -117734178 - L1MA3 LINE L1 -2366 3939 3449 360 289 59 20 chr11 31049322 31049623 -117733849 + L1ME LINE L1 1341 1806 -4911 213 139 23 0 chr11 31050327 31050370 -117733102 + (TTTG)n Simple_repeat Simple_repeat 4 47 0 1783 141 46 12 chr11 31051187 31051513 -117731959 + MER44D DNA MER2_type 2 608 -1 214 248 106 75 chr11 31051753 31051914 -117731558 + L2 LINE L2 3127 3292 -21 180 0 0 0 chr11 31052153 31052173 -117731299 + (T)n Simple_repeat Simple_repeat 1 20 0 362 201 77 66 chr11 31052737 31052869 -117730603 - MIR SINE MIR -62 146 37 24 32 0 0 chr11 31054722 31054753 -117728719 + AT_rich Low_complexity Low_complexity 1 31 0 2971 132 72 13 chr11 31055017 31055488 -117727984 - MER1A DNA MER1_type 0 529 31 237 214 89 0 chr11 31055840 31055896 -117727576 + MIR3 SINE MIR 143 203 -5 637 286 21 11 chr11 31056345 31056534 -117726938 - L1ME3A LINE L1 -36 6134 5944 901 79 58 0 chr11 31056562 31056701 -117726771 - L1MA5 LINE L1 -3 6297 6151 25 51 0 0 chr11 31056709 31056748 -117726724 + AT_rich Low_complexity Low_complexity 1 39 0 702 12 0 0 chr11 31056844 31056924 -117726548 + MADE1 DNA Mariner 1 80 0 314 147 64 0 chr11 31056963 31057120 -117726352 + (TA)n Simple_repeat Simple_repeat 1 167 0 301 234 0 16 chr11 31057991 31058115 -117725357 + (TA)n Simple_repeat Simple_repeat 1 122 0 263 237 0 26 chr11 31058140 31058216 -117725256 + (TA)n Simple_repeat Simple_repeat 1 74 0 217 260 156 10 chr11 31058472 31058568 -117724904 - MIR SINE MIR 0 262 153 821 244 34 34 chr11 31058711 31058949 -117724523 + MER46C DNA MER2_type 86 323 -15 250 261 14 43 chr11 31059001 31059070 -117724402 - MIR SINE MIR -149 113 47 2248 115 0 6 chr11 31059308 31059621 -117723851 + AluSx SINE Alu 1 311 -1 1616 135 52 8 chr11 31060155 31060422 -117723050 - Tigger5 DNA MER2_type 0 2323 2045 375 98 0 0 chr11 31060411 31060462 -117723010 + Tigger5 DNA MER2_type 143 193 -2130 * 405 189 0 14 chr11 31060466 31060540 -117722932 + Tigger5 DNA MER2_type 2251 2323 0 21 0 0 0 chr11 31060586 31060607 -117722865 + AT_rich Low_complexity Low_complexity 1 21 0 661 236 27 67 chr11 31061985 31062210 -117721262 + MLT1K LTR MaLR 322 537 -51 2342 200 177 7 chr11 31062220 31062790 -117720682 - L1MD2 LINE L1 -18 6341 5675 1955 176 9 0 chr11 31063517 31063863 -117719609 - L1PB4 LINE L1 0 6156 5808 258 146 34 45 chr11 31063938 31064027 -117719445 + (TA)n Simple_repeat Simple_repeat 2 89 0 229 355 9 45 chr11 31066609 31066719 -117716753 + L2 LINE L2 3149 3254 -18 1164 211 61 64 chr11 31067574 31067935 -117715537 - MER21B LTR ERV1 -19 844 485 2048 189 32 11 chr11 31067939 31068373 -117715099 - MER65A LTR ERV1 -2 443 1 2058 235 11 6 chr11 31068373 31068841 -117714631 - MER65A-int LTR ERV1 0 4871 4402 1781 269 66 0 chr11 31068845 31069272 -117714200 - MER65A-int LTR ERV1 -813 4058 3604 256 180 82 45 chr11 31069285 31069431 -117714041 - MER65A-int LTR ERV1 -939 5392 5192 180 186 0 0 chr11 31069579 31069638 -117713834 + C-rich Low_complexity Low_complexity 1 59 0 248 229 0 21 chr11 31069693 31069789 -117713683 + (CCA)n Simple_repeat Simple_repeat 3 96 0 * 276 201 13 65 chr11 31069728 31069882 -117713590 + (CACCC)n Simple_repeat Simple_repeat 3 148 0 1220 206 95 68 chr11 31070138 31071960 -117711512 - MER65A-int LTR ERV1 -353 4527 1546 25 51 0 0 chr11 31071982 31072021 -117711451 + AT_rich Low_complexity Low_complexity 1 39 0 2722 180 61 33 chr11 31072074 31072892 -117710580 - MER65A-int LTR ERV1 -2377 2494 1654 1928 109 85 21 chr11 31072903 31073234 -117710238 - THE1B LTR MaLR -12 352 1 11164 99 19 1 chr11 31073234 31074786 -117708686 - THE1B-int LTR MaLR 0 1580 1 2301 105 33 30 chr11 31074786 31075149 -117708323 - THE1B LTR MaLR 0 364 1 3784 202 61 47 chr11 31075149 31076285 -117707187 - MER65A-int LTR ERV1 -3237 1634 483 543 244 19 91 chr11 31076295 31076615 -117706857 - MER65A-int LTR ERV1 -4493 378 82 2447 154 7 29 chr11 31076699 31077153 -117706319 - MER65A LTR ERV1 -1 444 1 971 280 25 64 chr11 31077199 31077635 -117705837 - MER21B LTR ERV1 -444 419 1 498 373 65 27 chr11 31077661 31077924 -117705548 - L3 LINE CR1 -11 1566 1294 1931 172 74 54 chr11 31077991 31078491 -117704981 + LTR54 LTR ERV1 1 510 0 236 265 88 20 chr11 31078554 31078656 -117704816 - MLT1L LTR MaLR 0 615 507 230 293 40 71 chr11 31078823 31078922 -117704550 + L2 LINE L2 3177 3272 0 22 70 0 0 chr11 31079151 31079194 -117704278 + AT_rich Low_complexity Low_complexity 1 43 0 276 252 233 39 chr11 31079290 31079393 -117704079 + MER5A DNA MER1_type 46 168 -21 1048 235 9 0 chr11 31079581 31079798 -117703674 - MER20 DNA MER1_type 0 219 1 14856 132 20 7 chr11 31079930 31082317 -117701155 - Tigger1 DNA MER2_type 0 2418 1 287 295 39 23 chr11 31082468 31082597 -117700875 - HAL1 LINE L1 -897 1610 1480 327 296 82 58 chr11 31083382 31083673 -117699799 - L1MEd LINE L1 -4189 2398 2101 1659 139 44 25 chr11 31083878 31084195 -117699277 - AluJb SINE Alu 0 328 7 302 293 178 44 chr11 31084206 31084431 -117699041 - HAL1 LINE L1 -887 1620 1366 260 249 100 2 chr11 31084445 31084549 -117698923 - L1MEd LINE L1 -4867 1529 1423 1157 214 59 70 chr11 31084742 31085200 -117698272 - MLT2C2 LTR ERVL -11 453 1 1025 214 24 20 chr11 31085209 31085559 -117697913 - HsTC2 DNA Tc2 -207 1691 1284 249 304 51 22 chr11 31085574 31085712 -117697760 - HsTC2 DNA Tc2 -1751 147 6 300 271 42 31 chr11 31085807 31085903 -117697569 - L1MEd LINE L1 -5147 1262 1166 1719 177 34 71 chr11 31086132 31086535 -117696937 - L1MA4 LINE L1 0 6300 5790 369 0 0 0 chr11 31086535 31086576 -117696896 + (TG)n Simple_repeat Simple_repeat 2 42 0 1719 177 34 71 chr11 31086576 31086646 -117696826 - L1MA4 LINE L1 -510 5790 5719 200 320 20 72 chr11 31086651 31086804 -117696668 + MIR SINE MIR 117 261 -1 315 0 0 0 chr11 31087529 31087564 -117695908 + (A)n Simple_repeat Simple_repeat 1 35 0 239 293 32 73 chr11 31088444 31088567 -117694905 - L2 LINE L2 0 3272 3155 688 268 18 6 chr11 31088740 31088908 -117694564 - MIR SINE MIR -25 237 68 504 276 89 56 chr11 31088917 31089312 -117694160 - MLT1K LTR MaLR -4 584 177 237 308 33 33 chr11 31089314 31089434 -117694038 + MIR SINE MIR 143 262 0 2184 154 3 0 chr11 31089452 31089797 -117693675 + MER7A DNA MER2_type 2 345 -1 727 318 132 6 chr11 31089826 31090159 -117693313 - L2 LINE L2 0 3313 2939 183 322 56 56 chr11 31091708 31091851 -117691621 + L2 LINE L2 3171 3313 0 397 377 36 0 chr11 31092352 31092519 -117690953 + MIR SINE MIR 20 192 -70 193 226 0 38 chr11 31093825 31093878 -117689594 - MIR SINE MIR -71 191 141 378 319 9 0 chr11 31094207 31094320 -117689152 + MIR3 SINE MIR 65 178 -30 246 276 0 5 chr11 31094644 31094719 -117688753 - MIR SINE MIR -81 127 54 428 276 92 6 chr11 31094957 31095120 -117688352 + Charlie8 DNA MER1_type 47 223 -2194 402 329 64 14 chr11 31095120 31095260 -117688212 - MER91A DNA MER1_type -14 182 36 276 229 14 0 chr11 31095449 31095519 -117687953 + Charlie8 DNA MER1_type 2347 2417 0 1992 194 22 29 chr11 31096000 31096178 -117687294 + MLT1C LTR MaLR 1 179 -288 2066 114 4 4 chr11 31096178 31096479 -117686993 + AluSx SINE Alu 1 301 0 1992 194 22 29 chr11 31096479 31096752 -117686720 + MLT1C LTR MaLR 179 450 -17 207 269 0 0 chr11 31096938 31097068 -117686404 + G-rich Low_complexity Low_complexity 1 130 0 197 296 0 0 chr11 31097699 31097743 -117685729 + MIR SINE MIR 89 132 -76 305 309 0 0 chr11 31098106 31098190 -117685282 + CT-rich Low_complexity Low_complexity 2 85 0 242 318 126 45 chr11 31099102 31099325 -117684147 - MIR SINE MIR -6 256 16 180 234 0 0 chr11 31099354 31099401 -117684071 + (CA)n Simple_repeat Simple_repeat 2 48 0 530 224 16 0 chr11 31099724 31099849 -117683623 + MLT1F1 LTR MaLR 5 131 -436 1330 212 88 15 chr11 31099864 31100260 -117683212 + L1MD3 LINE L1 7435 7859 -136 517 160 76 8 chr11 31100384 31100515 -117682957 + L1MD3 LINE L1 7848 7987 -8 186 43 0 0 chr11 31100519 31100542 -117682930 + (T)n Simple_repeat Simple_repeat 1 23 0 206 365 65 0 chr11 31100569 31100676 -117682796 - L2 LINE L2 -286 2986 2873 1289 205 51 70 chr11 31101526 31101896 -117681576 - MLT1A1 LTR MaLR -2 363 1 935 255 129 54 chr11 31102083 31102101 -117681371 - L2 LINE L2 -1 3312 3297 2354 116 0 0 chr11 31102101 31102411 -117681061 + AluSq SINE Alu 1 310 -3 935 255 129 54 chr11 31102411 31102985 -117680487 - L2 LINE L2 -16 3297 2630 314 296 11 45 chr11 31103697 31103876 -117679596 + G-rich Low_complexity Low_complexity 2 174 0 318 282 12 0 chr11 31104313 31104398 -117679074 - MIR3 SINE MIR -11 197 112 762 274 47 35 chr11 31104424 31104679 -117678793 + MIR SINE MIR 1 258 -4 220 259 12 59 chr11 31106092 31106177 -117677295 - MIR SINE MIR -3 259 179 835 167 0 0 chr11 31106210 31106336 -117677136 - FLAM_C SINE Alu -17 126 1 407 375 0 0 chr11 31106348 31106508 -117676964 - MIR SINE MIR -81 181 22 1920 134 10 10 chr11 31106570 31106869 -117676603 + AluSx SINE Alu 1 299 -13 233 293 12 24 chr11 31107155 31107237 -117676235 + L2 LINE L2 3232 3312 -1 332 287 23 32 chr11 31107370 31107473 -117675999 - MIR SINE MIR -104 104 20 366 265 179 0 chr11 31107553 31107670 -117675802 - MIR3 SINE MIR -62 146 9 347 235 20 0 chr11 31107835 31107933 -117675539 - MIR3 SINE MIR -4 204 105 34 24 0 0 chr11 31108476 31108517 -117674955 + AT_rich Low_complexity Low_complexity 1 41 0 243 263 113 75 chr11 31108794 31108856 -117674616 + MIR SINE MIR 20 78 -184 2045 120 18 82 chr11 31108856 31109256 -117674216 - THE1C LTR MaLR -1 374 1 243 263 113 75 chr11 31109256 31109379 -117674093 + MIR SINE MIR 78 212 -50 538 293 88 26 chr11 31109452 31109684 -117673788 + MIR SINE MIR 9 251 -11 2314 116 129 5 chr11 31109888 31110269 -117673203 + MSTA LTR MaLR 1 428 0 284 392 19 24 chr11 31110409 31110618 -117672854 - L2 LINE L2 -506 2808 2601 1700 251 27 47 chr11 31111354 31111867 -117671605 - LTR33 LTR ERVL 0 521 19 291 294 111 8 chr11 31112090 31112216 -117671256 + MIR SINE MIR 88 226 -36 317 250 50 0 chr11 31112520 31112600 -117670872 + L2 LINE L2 3180 3263 -50 1790 292 129 22 chr11 31113616 31114157 -117669315 + L2 LINE L2 2244 2725 -588 875 87 79 0 chr11 31114157 31114284 -117669188 + MER85 DNA T2_type 3 139 0 1790 292 129 22 chr11 31114284 31114616 -117668856 + L2 LINE L2 2725 3244 -69 309 261 27 9 chr11 31115156 31115267 -117668205 + MLT1I LTR MaLR 48 160 -249 411 292 8 0 chr11 31115342 31115462 -117668010 + MLT1I LTR MaLR 285 405 -4 196 325 175 0 chr11 31115549 31115629 -117667843 + L2 LINE L2 3171 3264 -8 354 344 13 13 chr11 31116603 31116757 -117666715 + L2 LINE L2 3159 3312 -1 633 311 29 0 chr11 31117320 31117526 -117665946 + MIR SINE MIR 47 258 -4 827 229 112 87 chr11 31117615 31118109 -117665363 + MLT1H1 LTR MaLR 50 553 -2 489 325 10 41 chr11 31119056 31119250 -117664222 + MIR SINE MIR 5 192 -70 802 158 0 15 chr11 31119260 31119393 -117664079 + FLAM_C SINE Alu 1 131 -12 828 223 59 25 chr11 31119694 31119896 -117663576 - MIR SINE MIR -25 237 29 230 362 147 9 chr11 31119915 31120031 -117663441 + L2 LINE L2 3133 3264 -8 235 254 73 0 chr11 31120579 31120634 -117662838 + MIR SINE MIR 132 190 -72 314 304 68 68 chr11 31120697 31120888 -117662584 + MIR SINE MIR 20 210 -52 344 161 16 0 chr11 31121220 31121282 -117662190 - MIR SINE MIR -86 122 60 2401 103 0 0 chr11 31121332 31121642 -117661830 - AluSx SINE Alu -1 311 2 679 258 82 6 chr11 31121880 31122062 -117661410 - MIR SINE MIR -20 242 47 252 0 0 0 chr11 31122511 31122539 -117660933 + (TTA)n Simple_repeat Simple_repeat 3 30 0 45070 38 0 2 chr11 31122539 31128681 -117654791 - L1PA3 LINE L1 -18 6137 8 2097 262 103 32 chr11 31128786 31129360 -117654112 + MER20B DNA MER1_type 2 639 -144 185 81 0 27 chr11 31129360 31129397 -117654075 + (TTTTA)n Simple_repeat Simple_repeat 3 38 0 2097 262 103 32 chr11 31129397 31129543 -117653929 + MER20B DNA MER1_type 639 773 -10 496 201 75 44 chr11 31129778 31129937 -117653535 + MER103 DNA DNA 1 164 -2 436 322 88 57 chr11 31130133 31130484 -117652988 + MLT1K LTR MaLR 12 373 -215 1963 137 20 0 chr11 31131052 31131222 -117652250 - AluSx SINE Alu -13 299 119 207 0 0 0 chr11 31131222 31131245 -117652227 + (TG)n Simple_repeat Simple_repeat 2 24 0 1963 137 20 0 chr11 31131245 31131367 -117652105 - AluSx SINE Alu -193 119 1 261 139 0 0 chr11 31131816 31131859 -117651613 + (CCTA)n Simple_repeat Simple_repeat 1 43 0 366 313 55 37 chr11 31131943 31132106 -117651366 + MIR SINE MIR 1 166 -96 2322 168 12 16 chr11 31132106 31132535 -117650937 + L1MC3 LINE L1 7344 7770 -15 231 273 23 23 chr11 31132646 31132734 -117650738 + MIR3 SINE MIR 106 193 -15 262 233 137 0 chr11 31134221 31134294 -117649178 + L2 LINE L2 3230 3312 -1 190 300 0 17 chr11 31134402 31134462 -117649010 - L2 LINE L2 0 3313 3255 231 320 13 13 chr11 31134487 31134565 -117648907 + MER5B DNA MER1_type 64 141 -37 3778 129 34 0 chr11 31134630 31135166 -117648306 + MER41A LTR ERV1 1 554 0 2674 161 29 5 chr11 31135166 31135612 -117647860 + MER41A-int LTR ERV1 1 457 -7299 1419 84 31 0 chr11 31135614 31135805 -117647667 + MER41A-int LTR ERV1 1390 1586 -4360 227 328 0 15 chr11 31135805 31135872 -117647600 + tRNA-Glu-GAG tRNA tRNA 7 72 -3 518 148 0 0 chr11 31135876 31135964 -117647508 + MER41A-int LTR ERV1 753 840 -4377 850 85 0 8 chr11 31135966 31136084 -117647388 + MER41A-int LTR ERV1 1901 2017 -3929 * 4800 123 71 1 chr11 31136076 31136809 -117646663 + MER41A-int LTR ERV1 2163 2946 -3000 2856 138 89 31 chr11 31136793 31137378 -117646094 + MER41A-int LTR ERV1 2855 3473 -1542 * 9494 95 26 6 chr11 31137375 31138705 -117644767 + MER41A-int LTR ERV1 4590 5946 0 3889 101 11 2 chr11 31138706 31139230 -117644242 + MER41A LTR ERV1 3 531 -23 2197 81 14 11 chr11 31139443 31139726 -117643746 + AluSc SINE Alu 9 292 -17 23 33 0 0 chr11 31140165 31140195 -117643277 + AT_rich Low_complexity Low_complexity 1 30 0 2288 238 41 29 chr11 31140275 31140855 -117642617 + MER69 DNA AcHobo 1 587 -1939 478 196 29 0 chr11 31140841 31140943 -117642529 + MER69 DNA AcHobo 2036 2140 -386 * 374 105 0 0 chr11 31141657 31141714 -117641758 - MLT2B1 LTR ERVL 0 520 464 285 98 0 0 chr11 31141723 31141764 -117641708 + (CA)n Simple_repeat Simple_repeat 2 42 0 2095 190 55 47 chr11 31141779 31142252 -117641220 - MLT2B1 LTR ERVL -39 481 5 472 229 29 0 chr11 31142445 31142550 -117640922 + MIR SINE MIR 31 138 -124 2266 93 3 3 chr11 31142646 31142936 -117640536 - AluSc SINE Alu -19 290 1 2673 130 47 5 chr11 31143033 31143440 -117640032 + MSTA LTR MaLR 5 428 0 807 269 45 21 chr11 31144040 31144282 -117639190 - MIR SINE MIR -7 255 8 532 305 13 0 chr11 31144651 31144802 -117638670 + L3 LINE CR1 1424 1576 -1 429 279 137 16 chr11 31144816 31145006 -117638466 - LTR50 LTR ERVL -190 605 393 4829 211 89 42 chr11 31145043 31147038 -117636434 + L1MD3 LINE L1 3797 5403 -743 932 114 8 0 chr11 31147044 31147175 -117636297 + AluJb SINE Alu 1 132 -180 690 267 0 26 chr11 31147176 31147367 -117636105 + L1ME2 LINE L1 5860 6045 -119 1286 123 44 0 chr11 31147367 31147571 -117635901 - MLT1B LTR MaLR -177 213 1 1739 179 3 3 chr11 31147688 31147990 -117635482 + AluJo SINE Alu 1 302 -10 885 210 20 115 chr11 31149026 31149182 -117634290 + MER45C DNA AcHobo 726 851 -730 1857 153 10 10 chr11 31149182 31149490 -117633982 - AluJb SINE Alu -4 308 1 885 210 20 115 chr11 31149490 31149585 -117633887 + MER45C DNA AcHobo 851 953 0 494 261 14 14 chr11 31149926 31150065 -117633407 + MIR SINE MIR 32 177 -31 211 219 0 62 chr11 31151272 31151336 -117632136 + L2 LINE L2 3254 3313 0 344 336 9 58 chr11 31151486 31151709 -117631763 + L2 LINE L2 2550 2761 -553 2164 123 89 60 chr11 31151971 31152165 -117631307 + MSTA LTR MaLR 1 188 -240 2048 120 0 7 chr11 31152165 31152468 -117631004 + AluSx SINE Alu 1 301 0 2164 123 89 60 chr11 31152468 31152688 -117630784 + MSTA LTR MaLR 188 428 0 418 323 93 56 chr11 31152754 31152939 -117630533 + L2 LINE L2 2773 2950 -322 590 309 74 8 chr11 31152939 31153182 -117630290 - MIR SINE MIR -2 260 2 418 323 93 56 chr11 31153182 31153464 -117630008 + L2 LINE L2 2950 3267 -5 395 250 258 23 chr11 31153793 31154175 -117629297 - MLT1H1 LTR MaLR -2 593 104 290 330 0 0 chr11 31154237 31154328 -117629144 - MLT1H1 LTR MaLR -460 95 5 481 314 238 0 chr11 31154552 31154737 -117628735 - MIR SINE MIR 0 262 34 417 324 82 0 chr11 31155127 31155297 -117628175 + L2 LINE L2 3086 3269 -3 235 241 0 35 chr11 31155338 31155396 -117628076 + MIR SINE MIR 17 72 -136 25 31 0 0 chr11 31155758 31155790 -117627682 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr11 31155797 31155832 -117627640 + AT_rich Low_complexity Low_complexity 1 35 0 693 234 141 35 chr11 31156073 31156300 -117627172 - MIR SINE MIR -5 257 7 252 195 91 26 chr11 31156613 31156690 -117626782 - MER103 DNA DNA -71 95 14 355 301 106 0 chr11 31156826 31157025 -117626447 + L2 LINE L2 2832 3051 -221 505 277 27 96 chr11 31157181 31157293 -117626179 - MIR SINE MIR -17 245 154 1730 192 0 26 chr11 31157293 31157595 -117625877 - AluJb SINE Alu -16 296 3 505 277 27 96 chr11 31157595 31157702 -117625770 - MIR SINE MIR -108 154 41 790 220 72 68 chr11 31158108 31158344 -117625128 - MIR SINE MIR -13 249 13 690 315 36 9 chr11 31159063 31159282 -117624190 + MIR SINE MIR 2 226 -36 314 290 19 9 chr11 31159887 31159994 -117623478 - MLT1G1 LTR MaLR -481 114 7 1537 170 111 3 chr11 31160036 31160342 -117623130 + MER44D DNA MER2_type 1 609 0 429 281 31 16 chr11 31160449 31160577 -117622895 + MIR SINE MIR 17 146 -62 373 327 9 0 chr11 31160723 31160836 -117622636 - MER94 DNA DNA -14 120 7 699 147 47 6 chr11 31211229 31211399 -117572073 + CT-rich Low_complexity Low_complexity 2 178 0 446 306 122 5 chr11 31211610 31211806 -117571666 + L2 LINE L2 2721 2939 -375 770 225 0 0 chr11 31211828 31211970 -117571502 - AluJb SINE Alu -31 281 140 694 261 209 34 chr11 31211973 31212299 -117571173 + L2 LINE L2 2929 3311 -2 386 267 117 8 chr11 31212427 31212547 -117570925 - MIR SINE MIR -13 249 117 229 282 24 35 chr11 31212541 31212626 -117570846 + MIR3 SINE MIR 115 198 -10 * 366 284 28 21 chr11 31213094 31213278 -117570194 - MIR3 SINE MIR -9 199 13 543 257 35 14 chr11 31213686 31213830 -117569642 + MIR SINE MIR 47 193 -69 244 209 12 116 chr11 31213831 31213917 -117569555 - MIR SINE MIR -9 253 177 2364 198 42 12 chr11 31214346 31214921 -117568551 + L1MC4 LINE L1 7309 7900 -142 304 135 0 0 chr11 31214926 31214978 -117568494 + L1MC4 LINE L1 7989 8040 -2 348 289 81 57 chr11 31215001 31215240 -117568232 - L1ME3A LINE L1 -302 5868 5621 2060 211 77 6 chr11 31215240 31215708 -117567764 - MLT1D LTR MaLR -2 503 3 348 289 81 57 chr11 31215708 31215750 -117567722 - L1ME3A LINE L1 -549 5621 5581 438 273 41 72 chr11 31215884 31215931 -117567541 - MIR SINE MIR -71 191 144 342 203 13 0 chr11 31215931 31216010 -117567462 + MER116 DNA Mariner 1 80 0 438 273 41 72 chr11 31216010 31216156 -117567316 - MIR SINE MIR -118 144 4 267 304 16 40 chr11 31216814 31216939 -117566533 + MIR3 SINE MIR 82 203 -5 304 318 48 18 chr11 31217171 31217570 -117565902 + L1MC/D LINE L1 4370 4780 -1366 1888 109 0 32 chr11 31217806 31218091 -117565381 + AluSq SINE Alu 32 307 -6 21 0 0 0 chr11 31218139 31218160 -117565312 + AT_rich Low_complexity Low_complexity 1 21 0 445 249 42 22 chr11 31218179 31218449 -117565023 + L1MC/D LINE L1 5143 5425 -743 243 170 0 0 chr11 31219215 31219262 -117564210 + GA-rich Low_complexity Low_complexity 1 47 0 218 228 18 0 chr11 31219299 31219356 -117564116 + GA-rich Low_complexity Low_complexity 1 58 0 269 227 0 13 chr11 31221383 31221458 -117562014 + L1MC/D LINE L1 5412 5485 -2323 438 289 23 16 chr11 31221533 31221661 -117561811 + MIR SINE MIR 15 143 -119 486 266 131 23 chr11 31221721 31221935 -117561537 - MIR SINE MIR -25 237 1 186 388 31 20 chr11 31222759 31222857 -117560615 - L2 LINE L2 -38 3234 3136 276 315 11 22 chr11 31222990 31223079 -117560393 + MER5B DNA MER1_type 17 104 -74 664 274 78 113 chr11 31223601 31224098 -117559374 - L3 LINE CR1 -15 1562 1083 382 313 26 72 chr11 31224196 31224331 -117559141 - MIR SINE MIR -66 142 66 2109 172 10 40 chr11 31224331 31224733 -117558739 + MLT1B LTR MaLR 1 390 0 382 313 26 72 chr11 31224733 31224778 -117558694 - MIR SINE MIR -142 66 20 2287 108 74 14 chr11 31225493 31225844 -117557628 + THE1C LTR MaLR 4 375 0 376 305 120 35 chr11 31225929 31226129 -117557343 + MIR SINE MIR 17 233 -29 2184 119 0 0 chr11 31226130 31226432 -117557040 - AluSg SINE Alu -8 302 1 700 281 91 13 chr11 31226451 31226682 -117556790 - MIR SINE MIR -10 252 4 361 298 133 6 chr11 31226710 31226868 -117556604 + MIR SINE MIR 74 251 -11 198 322 17 0 chr11 31227527 31227586 -117555886 + MIR SINE MIR 32 91 -117 1049 227 23 9 chr11 31227594 31227810 -117555662 - MER58A DNA MER1_type 0 224 6 413 259 229 0 chr11 31227892 31228058 -117555414 + MIR SINE MIR 2 205 -57 1396 180 90 37 chr11 31228075 31228398 -117555074 - MLT1A1 LTR MaLR -2 363 24 738 242 99 19 chr11 31228487 31228698 -117554774 + MIR SINE MIR 9 236 -26 597 247 74 58 chr11 31228804 31229168 -117554304 - L1ME4a LINE L1 -184 5937 5568 446 109 0 0 chr11 31229168 31229232 -117554240 - MSTD LTR MaLR 0 396 333 1087 161 54 40 chr11 31229245 31229468 -117554004 - MSTD LTR MaLR -170 226 1 426 297 21 67 chr11 31230085 31230324 -117553148 + MIR SINE MIR 21 248 -14 538 237 25 89 chr11 31230549 31230785 -117552687 - L1ME LINE L1 -375 5746 5526 371 163 0 23 chr11 31230948 31231034 -117552438 + GA-rich Low_complexity Low_complexity 2 85 0 362 294 75 60 chr11 31231930 31232131 -117551341 + MIR SINE MIR 21 224 -38 284 373 45 0 chr11 31233023 31233133 -117550339 + L2 LINE L2 3112 3226 -46 216 67 0 0 chr11 31233137 31233167 -117550305 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 331 331 102 25 chr11 31233292 31233449 -117550023 - L2 LINE L2 0 3272 3104 365 320 90 34 chr11 31234508 31234742 -117548730 - MIR SINE MIR -9 253 7 416 241 145 36 chr11 31234765 31234931 -117548541 + MIR SINE MIR 79 262 0 288 368 32 32 chr11 31235361 31235486 -117547986 - L2 LINE L2 -23 3249 3125 191 294 109 25 chr11 31236599 31236718 -117546754 + MIR3 SINE MIR 32 160 -48 235 298 85 64 chr11 31236733 31236874 -117546598 - MER5A DNA MER1_type -24 165 22 2735 207 23 15 chr11 31237008 31237529 -117545943 - MLT1F LTR MaLR -2 540 16 429 335 97 6 chr11 31237923 31238099 -117545373 - MIR SINE MIR -37 225 34 230 288 41 27 chr11 31238739 31238812 -117544660 - MIR SINE MIR -21 241 168 181 324 15 15 chr11 31238869 31238937 -117544535 - MIR3 SINE MIR -7 201 134 246 297 184 0 chr11 31239348 31239475 -117543997 + MIR SINE MIR 2 149 -62 451 309 63 0 chr11 31240050 31240176 -117543296 + MIR SINE MIR 108 241 -21 221 293 17 0 chr11 31240198 31240256 -117543216 + L2 LINE L2 3211 3269 -3 249 262 224 9 chr11 31240508 31240615 -117542857 - MIR SINE MIR -60 148 19 403 188 70 10 chr11 31241058 31241158 -117542314 + MER21B LTR ERV1 3 106 -757 * 469 169 0 0 chr11 31241156 31241227 -117542245 + MER21B LTR ERV1 19 89 -774 3446 198 93 7 chr11 31241228 31241977 -117541495 + MER21B LTR ERV1 41 854 -9 415 253 0 96 chr11 31242142 31242288 -117541184 + MIR SINE MIR 53 184 -78 2034 164 49 0 chr11 31242301 31242630 -117540842 - MER7A DNA MER2_type -2 344 2 183 324 27 18 chr11 31243182 31243293 -117540179 + L3b LINE CR1 1219 1330 -253 949 298 8 0 chr11 31243336 31243594 -117539878 + MIR SINE MIR 1 260 -2 2181 120 23 0 chr11 31243996 31244295 -117539177 - AluSx SINE Alu -2 310 5 248 156 0 44 chr11 31245370 31245415 -117538057 + MLT2A2 LTR ERVL 93 135 -318 533 210 154 43 chr11 31245960 31246122 -117537350 - MER5A DNA MER1_type -6 183 4 239 276 35 69 chr11 31246161 31246248 -117537224 - MER5B DNA MER1_type -58 120 37 2098 142 24 35 chr11 31246537 31246910 -117536562 + MLT1B LTR MaLR 22 390 0 346 327 9 0 chr11 31246975 31247088 -117536384 + MIR3 SINE MIR 65 178 -30 312 340 34 48 chr11 31247381 31247528 -117535944 - MIR3 SINE MIR -46 162 18 2208 109 118 12 chr11 31248708 31249037 -117534435 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr11 31249734 31249755 -117533717 + AT_rich Low_complexity Low_complexity 1 21 0 428 313 84 69 chr11 31249959 31250291 -117533181 - L2 LINE L2 0 3272 2936 237 324 0 0 chr11 31251844 31251915 -117531557 - L2 LINE L2 -2 3311 3241 416 253 27 163 chr11 31252650 31252907 -117530565 - MIR SINE MIR 0 262 41 305 238 248 0 chr11 31253002 31253107 -117530365 - MIR SINE MIR -62 146 16 28 0 0 0 chr11 31254257 31254285 -117529187 + AT_rich Low_complexity Low_complexity 1 28 0 586 184 0 0 chr11 31254365 31254468 -117529004 - L1MA10 LINE L1 -37 6297 6195 199 308 128 0 chr11 31254499 31254577 -117528895 + MIR SINE MIR 78 165 -97 2498 39 0 0 chr11 31254577 31254860 -117528612 + AluY SINE Alu 1 283 -28 760 141 28 11 chr11 31255006 31255183 -117528289 + GA-rich Low_complexity Low_complexity 1 180 0 1367 261 64 50 chr11 31255185 31255744 -117527728 - MLT1F1 LTR MaLR 0 567 1 2677 183 24 36 chr11 31255986 31256489 -117526983 + MLT1D LTR MaLR 5 501 -4 29 0 0 0 chr11 31256571 31256600 -117526872 + AT_rich Low_complexity Low_complexity 1 29 0 313 265 143 0 chr11 31256813 31256911 -117526561 - L2 LINE L2 -6 3307 3196 240 291 74 27 chr11 31256944 31256989 -117526483 - L2 LINE L2 -552 2762 2721 1774 159 22 12 chr11 31256989 31257310 -117526162 + MER33 DNA MER1_type 1 324 0 240 291 74 27 chr11 31257310 31257412 -117526060 - L2 LINE L2 -593 2721 2608 277 292 99 19 chr11 31259478 31259639 -117523833 - MLT1L LTR MaLR -12 603 430 477 259 59 71 chr11 31259708 31259947 -117523525 - MLT1L LTR MaLR -289 326 91 513 263 63 26 chr11 31260246 31260436 -117523036 - MIR SINE MIR -15 247 51 1101 320 143 32 chr11 31260485 31261667 -117521805 - L2 LINE L2 -49 3264 1948 1716 273 88 28 chr11 31261674 31262344 -117521128 + HAL1 LINE L1 1323 2032 -475 542 247 56 6 chr11 31262362 31262540 -117520932 - LTR37A LTR ERV1 0 426 240 2279 204 59 33 chr11 31262589 31263207 -117520265 - MLT1E2 LTR MaLR -2 624 1 371 258 45 51 chr11 31263211 31263389 -117520083 - LTR37A LTR ERV1 -242 184 8 805 217 111 57 chr11 31263397 31263747 -117519725 + HAL1 LINE L1 2067 2435 -72 343 252 156 7 chr11 31264067 31264202 -117519270 - MIR SINE MIR -10 252 98 553 250 101 27 chr11 31264217 31264405 -117519067 - MIR SINE MIR 0 262 61 264 278 83 75 chr11 31264815 31264948 -117518524 + MLT1K LTR MaLR 253 386 -202 2221 164 15 22 chr11 31265394 31265796 -117517676 + L1MA7 LINE L1 5578 5976 -315 357 81 129 0 chr11 31265831 31265893 -117517579 + L1MA7 LINE L1 6211 6280 -11 354 267 0 0 chr11 31265918 31265993 -117517479 - MER5A DNA MER1_type -114 75 1 725 137 16 33 chr11 31268335 31268517 -117514955 + GA-rich Low_complexity Low_complexity 2 180 0 302 328 8 42 chr11 31268918 31269037 -117514435 + L2 LINE L2 3199 3313 0 756 268 48 10 chr11 31269677 31269886 -117513586 - MIR SINE MIR -35 227 11 658 167 24 8 chr11 31269865 31269991 -117513481 - L2 LINE L2 0 3313 3186 * 321 154 15 15 chr11 31270556 31270621 -117512851 - L2 LINE L2 -1 3271 3207 2063 202 31 49 chr11 31270625 31271139 -117512333 + MLT1D LTR MaLR 1 505 0 377 322 17 63 chr11 31271208 31271382 -117512090 + L2 LINE L2 3101 3266 -6 1925 128 24 0 chr11 31271382 31271679 -117511793 + AluSx SINE Alu 1 304 -8 202 320 244 13 chr11 31272160 31272238 -117511234 - L2 LINE L2 -43 3229 3134 526 267 12 25 chr11 31272941 31273102 -117510370 + MIR SINE MIR 14 172 -90 341 265 12 0 chr11 31273301 31273384 -117510088 - L2 LINE L2 0 3272 3189 238 429 0 0 chr11 31273383 31273467 -117510005 + L2 LINE L2 3140 3223 -49 * 1150 147 11 0 chr11 31273496 31273686 -117509786 - L1MA4A LINE L1 0 6303 6112 216 0 0 0 chr11 31273686 31273710 -117509762 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2134 122 0 0 chr11 31273710 31273989 -117509483 - AluSg SINE Alu -31 279 1 29 60 0 0 chr11 31274015 31274065 -117509407 + AT_rich Low_complexity Low_complexity 1 50 0 253 289 81 24 chr11 31274138 31274349 -117509123 - L1M2 LINE L1 -767 5545 5323 390 349 33 40 chr11 31274349 31274647 -117508825 + L1ME1 LINE L1 5626 5881 -285 616 310 56 15 chr11 31275816 31276013 -117507459 - MIR SINE MIR -35 227 23 744 300 99 25 chr11 31276821 31277064 -117506408 + MIR SINE MIR 2 262 0 190 288 25 12 chr11 31277072 31277152 -117506320 + MIR SINE MIR 136 216 -46 1058 231 32 12 chr11 31277173 31277424 -117506048 + L2 LINE L2 2432 2687 -627 1537 222 119 128 chr11 31277469 31277857 -117505615 - L1MC4a LINE L1 0 7808 7418 930 69 0 0 chr11 31277857 31277973 -117505499 - AluSp/q SINE Alu -8 305 190 1537 222 119 128 chr11 31277973 31278320 -117505152 - L1MC4a LINE L1 -390 7418 7070 279 93 0 0 chr11 31278320 31278363 -117505109 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 1537 222 119 128 chr11 31278363 31278724 -117504748 - L1MC4a LINE L1 -738 7070 6606 955 265 143 25 chr11 31278744 31279295 -117504177 + L2 LINE L2 2697 3313 0 305 279 83 106 chr11 31279300 31279554 -117503918 + MIR SINE MIR 13 260 -2 204 40 0 0 chr11 31280801 31280826 -117502646 + (CA)n Simple_repeat Simple_repeat 1 25 0 2378 156 5 26 chr11 31280868 31281514 -117501958 + L1PB3 LINE L1 4810 5447 -704 2587 140 5 29 chr11 31281514 31281955 -117501517 + L1PB3 LINE L1 5723 6154 0 531 220 21 43 chr11 31282019 31282160 -117501312 + MIR SINE MIR 28 165 -97 294 182 18 0 chr11 31282748 31282803 -117500669 + MER103 DNA DNA 62 117 -49 340 265 90 60 chr11 31282882 31283048 -117500424 + MIR SINE MIR 6 176 -86 557 188 168 48 chr11 31283174 31283297 -117500175 + MER33 DNA MER1_type 1 108 -2477 330 26 0 0 chr11 31283297 31283336 -117500136 + (CA)n Simple_repeat Simple_repeat 2 40 0 557 188 168 48 chr11 31283336 31283420 -117500052 + MER33 DNA MER1_type 108 233 -91 295 229 0 19 chr11 31284398 31284503 -117498969 + GA-rich Low_complexity Low_complexity 3 105 0 10941 127 29 14 chr11 31286425 31288267 -117495205 - Tigger1 DNA MER2_type 0 2418 548 807 289 135 53 chr11 31288619 31289173 -117494299 - L2 LINE L2 0 3313 2693 2179 127 3 0 chr11 31289173 31289481 -117493991 - AluSx SINE Alu -3 309 1 807 289 135 53 chr11 31289481 31289711 -117493761 - L2 LINE L2 -620 2693 2483 580 238 12 19 chr11 31289907 31290067 -117493405 + L2 LINE L2 3148 3306 -7 736 255 118 10 chr11 31290141 31290345 -117493127 - MIR SINE MIR 0 262 37 276 287 23 0 chr11 31291010 31291097 -117492375 + MIR SINE MIR 174 262 0 416 303 66 71 chr11 31291373 31291584 -117491888 + L2 LINE L2 3063 3272 0 347 299 199 17 chr11 31291618 31291859 -117491613 - L3 LINE CR1 -73 1504 1220 298 343 97 46 chr11 31292062 31292453 -117491019 - MLT1K LTR MaLR -31 557 147 231 274 245 0 chr11 31292627 31292733 -117490739 + L2 LINE L2 3182 3313 0 204 211 0 99 chr11 31292746 31292817 -117490655 - L3 LINE CR1 -352 1225 1162 184 233 223 0 chr11 31292875 31292978 -117490494 + MIR SINE MIR 87 212 -50 195 121 30 0 chr11 31293371 31293404 -117490068 + L2 LINE L2 3264 3297 -16 720 141 0 0 chr11 31293587 31293708 -117489764 + (GGGA)n Simple_repeat Simple_repeat 4 124 0 387 263 10 20 chr11 31294294 31294393 -117489079 - L2 LINE L2 -23 3290 3193 261 337 31 10 chr11 31294406 31294504 -117488968 - MIR SINE MIR -79 129 30 391 323 74 45 chr11 31294751 31295020 -117488452 + L2 LINE L2 3037 3313 0 1802 281 50 18 chr11 31295951 31296674 -117486798 + MER20B DNA MER1_type 1 746 -37 282 330 28 37 chr11 31297502 31297611 -117485861 + L2 LINE L2 3204 3311 -2 939 283 100 57 chr11 31298424 31298964 -117484508 - MLT1K LTR MaLR -10 578 16 343 286 94 83 chr11 31298993 31299343 -117484129 + L1ME3 LINE L1 5585 5938 -183 248 315 40 47 chr11 31299959 31300108 -117483364 - MIR SINE MIR -6 256 109 243 0 0 0 chr11 31300659 31300686 -117482786 + (CA)n Simple_repeat Simple_repeat 2 28 0 3236 144 13 42 chr11 31300697 31300812 -117482660 + MER1A DNA MER1_type 1 118 -2582 2056 160 0 3 chr11 31300812 31301125 -117482347 - AluSx SINE Alu 0 312 1 3236 144 13 42 chr11 31301125 31301552 -117481920 + MER1A DNA MER1_type 118 527 0 2141 98 11 0 chr11 31302350 31302665 -117480807 + AluSc SINE Alu 1 318 0 227 188 0 29 chr11 31303573 31303642 -117479830 + (CATATA)n Simple_repeat Simple_repeat 2 68 0 234 0 0 0 chr11 31304316 31304342 -117479130 + (CGGGG)n Simple_repeat Simple_repeat 1 26 0 1336 211 55 43 chr11 31305063 31305511 -117477961 - MLT1C LTR MaLR -30 465 5 464 239 142 0 chr11 31305844 31305957 -117477515 + L2 LINE L2 3139 3267 -5 363 78 0 0 chr11 31306336 31306387 -117477085 + (TG)n Simple_repeat Simple_repeat 1 51 0 233 224 106 128 chr11 31307383 31307493 -117475979 + MIR SINE MIR 84 190 -72 2058 116 25 0 chr11 31307493 31307770 -117475702 + AluSg SINE Alu 3 286 -24 233 224 106 128 chr11 31307770 31307838 -117475634 + MIR SINE MIR 190 258 -4 273 160 0 0 chr11 31308011 31308061 -117475411 + L1ME3 LINE L1 6105 6154 -8 577 257 81 9 chr11 31308469 31308663 -117474809 - MIR SINE MIR 0 262 65 1099 139 49 67 chr11 31308667 31308890 -117474582 + AluJb SINE Alu 94 312 0 406 235 0 5 chr11 31308906 31308992 -117474480 - MIR SINE MIR -122 86 3 3458 105 15 18 chr11 31309047 31309663 -117473809 + MER4B LTR ERV1 1 779 0 183 42 0 0 chr11 31309909 31309933 -117473539 + (TG)n Simple_repeat Simple_repeat 2 25 0 278 208 117 13 chr11 31310042 31310119 -117473353 + L2 LINE L2 1879 1963 -1351 181 314 129 0 chr11 31310247 31310317 -117473155 + L2 LINE L2 3143 3221 -51 1964 135 130 18 chr11 31310362 31310746 -117472726 - MSTA LTR MaLR -1 427 1 3303 138 14 12 chr11 31310750 31311315 -117472157 - MSTA-int LTR MaLR -11 1569 1004 863 165 131 55 chr11 31311319 31311382 -117472090 - MSTA LTR MaLR -173 255 198 2281 100 0 0 chr11 31311382 31311673 -117471799 - AluSc SINE Alu -18 291 1 863 165 131 55 chr11 31311673 31311846 -117471626 - MSTA LTR MaLR -230 198 1 289 193 178 13 chr11 31311846 31311952 -117471520 + MIR SINE MIR 47 144 -64 1893 217 46 65 chr11 31312165 31312626 -117470846 + MLT1F LTR MaLR 10 461 -81 2438 55 10 3 chr11 31312626 31312919 -117470553 - AluY SINE Alu -16 295 1 1893 217 46 65 chr11 31312919 31313000 -117470472 + MLT1F LTR MaLR 461 542 0 258 367 0 0 chr11 31314192 31314282 -117469190 - MIR SINE MIR -108 154 65 206 374 17 0 chr11 31314523 31314638 -117468834 - MIR SINE MIR -12 250 134 * 1426 237 82 31 chr11 31314593 31315108 -117468364 + L2 LINE L2 1544 2084 -1230 370 228 118 6 chr11 31315114 31315269 -117468203 + L1M4 LINE L1 4311 4482 -1664 519 273 137 0 chr11 31315287 31315470 -117468002 + L2 LINE L2 2067 2274 -1040 1132 150 16 0 chr11 31315473 31315660 -117467812 + MSTB LTR MaLR 237 426 0 931 290 112 28 chr11 31315660 31316164 -117467308 + L2 LINE L2 2513 3077 -195 1749 271 71 19 chr11 31316164 31316728 -117466744 + MLT1E LTR MaLR 1 593 0 931 290 112 28 chr11 31316728 31316939 -117466533 + L2 LINE L2 3077 3269 -3 900 183 186 8 chr11 31317006 31317258 -117466214 - MER5C DNA MER1_type -17 307 11 535 244 6 62 chr11 31317432 31317608 -117465864 + LTR16A1 LTR ERVL 266 431 -26 1598 184 32 26 chr11 31317995 31318337 -117465135 - MER2 DNA MER2_type 0 344 1 2862 218 93 29 chr11 31318550 31319381 -117464091 - MLT1D-int LTR MaLR -487 884 1 1388 244 68 43 chr11 31319381 31319869 -117463603 - MLT1D LTR MaLR 0 505 6 619 224 29 63 chr11 31319889 31320063 -117463409 + L2 LINE L2 2629 2796 -518 307 271 78 8 chr11 31320303 31320432 -117463040 + L1ME4a LINE L1 5984 6121 0 193 216 59 39 chr11 31320616 31320667 -117462805 + L2 LINE L2 3262 3313 0 311 264 144 8 chr11 31321529 31321654 -117461818 - MIR SINE MIR -12 250 109 1493 287 30 13 chr11 31321662 31322129 -117461343 + MLT1J LTR MaLR 1 475 -36 189 306 42 0 chr11 31322130 31322202 -117461270 - MIR SINE MIR -156 106 32 211 373 0 15 chr11 31322455 31322522 -117460950 - MIR SINE MIR -126 82 17 749 250 36 16 chr11 31323157 31323349 -117460123 + MIR SINE MIR 59 254 -8 410 94 16 0 chr11 31323350 31323414 -117460058 + (CAT)n Simple_repeat Simple_repeat 1 65 0 240 293 0 94 chr11 31323804 31323910 -117459562 + L2 LINE L2 2979 3074 -198 400 275 63 53 chr11 31324070 31324418 -117459054 + MLT1L LTR MaLR 238 612 -3 257 321 144 5 chr11 31324630 31324845 -117458627 + L2 LINE L2 3069 3313 0 193 235 78 0 chr11 31325078 31325129 -117458343 - L2 LINE L2 -1 3312 3258 564 291 125 35 chr11 31325306 31325619 -117457853 - MER102b DNA MER1_type 0 341 1 298 268 0 0 chr11 31325896 31325952 -117457520 - MIR SINE MIR -133 75 20 192 121 30 0 chr11 31326115 31326148 -117457324 + L2 LINE L2 3264 3297 -16 720 141 0 0 chr11 31326331 31326452 -117457020 + (GGGA)n Simple_repeat Simple_repeat 4 124 0 189 336 119 15 chr11 31326769 31326903 -117456569 - MIR3 SINE MIR -6 202 55 895 326 128 23 chr11 31327532 31328331 -117455141 + L2 LINE L2 2375 3255 -58 197 256 0 0 chr11 31328724 31328767 -117454705 + L2 LINE L2 3226 3268 -4 961 126 0 0 chr11 31328878 31329005 -117454467 + FLAM_C SINE Alu 2 128 -5 511 307 14 14 chr11 31330240 31330380 -117453092 + MIR3 SINE MIR 37 176 -32 284 188 254 65 chr11 31330969 31331107 -117452365 - L1ME4a LINE L1 -3 6118 5955 356 165 132 11 chr11 31331177 31331268 -117452204 - MLT1K LTR MaLR 0 588 487 432 314 6 6 chr11 31331271 31331443 -117452029 + L1ME3A LINE L1 5735 5906 -264 7429 41 3 6 chr11 31331707 31331825 -117451647 - L1PA6 LINE L1 -6 6148 6031 2602 49 0 0 chr11 31331825 31332132 -117451340 - AluY SINE Alu -4 307 1 7429 41 3 6 chr11 31332132 31332910 -117450562 - L1PA6 LINE L1 -123 6031 5254 795 279 37 113 chr11 31333027 31333489 -117449983 - MLT1K LTR MaLR -159 429 3 669 277 62 19 chr11 31334043 31334364 -117449108 - L1ME4a LINE L1 -267 5854 5520 550 339 14 9 chr11 31334574 31334792 -117448680 + L2 LINE L2 2421 2639 -675 820 293 125 36 chr11 31334865 31335312 -117448160 + L2 LINE L2 2813 3299 -14 300 158 0 0 chr11 31335313 31335370 -117448102 + CT-rich Low_complexity Low_complexity 1 57 0 325 317 83 0 chr11 31335896 31336041 -117447431 + MER117 DNA MER1_type 41 197 0 623 329 32 5 chr11 31336410 31336629 -117446843 + MIR SINE MIR 30 254 -8 258 281 150 15 chr11 31337391 31337521 -117445951 - MIR3 SINE MIR -12 196 48 570 304 93 5 chr11 31337628 31337832 -117445640 - MIR SINE MIR -3 259 38 457 85 0 0 chr11 31338532 31338591 -117444881 + HERVL-A2 LTR ERVL 4548 4606 -1048 5805 73 3 1 chr11 31338599 31339329 -117444143 + HERVL-A2 LTR ERVL 4924 5654 0 3514 45 24 56 chr11 31339333 31339517 -117443955 + MLT2A2 LTR ERVL 5 193 -260 2327 37 4 0 chr11 31339517 31339787 -117443685 + AluY SINE Alu 32 302 -9 3514 45 24 56 chr11 31339787 31340066 -117443406 + MLT2A2 LTR ERVL 193 453 0 293 271 82 16 chr11 31340690 31340812 -117442660 + L3 LINE CR1 739 868 -709 213 262 193 35 chr11 31341035 31341180 -117442292 + MIR SINE MIR 35 202 -60 799 259 87 51 chr11 31341592 31341947 -117441525 + L3 LINE CR1 1021 1388 -189 872 276 49 0 chr11 31341975 31342200 -117441272 + MIR SINE MIR 11 246 -16 237 226 0 0 chr11 31342220 31342273 -117441199 - L2 LINE L2 -1061 2253 2201 894 304 26 26 chr11 31342278 31342591 -117440881 - MLT1L LTR MaLR -7 608 296 255 270 24 63 chr11 31342624 31342750 -117440722 - MLT1L LTR MaLR -427 188 68 230 344 95 36 chr11 31342783 31343339 -117440133 - L2 LINE L2 -1198 2116 1528 352 329 47 13 chr11 31344281 31344430 -117439042 - MIR SINE MIR -72 190 37 333 328 0 8 chr11 31344640 31344762 -117438710 - LTR67 LTR ERVL -7 550 430 232 357 18 36 chr11 31345504 31345672 -117437800 + MER5B DNA MER1_type 7 171 -7 424 313 97 15 chr11 31345738 31345933 -117437539 + MIR SINE MIR 17 227 -35 680 324 21 8 chr11 31347110 31347348 -117436124 - MIR SINE MIR -12 250 10 1335 68 0 28 chr11 31348696 31348873 -117434599 + AluY SINE Alu 127 298 -13 23 0 0 0 chr11 31348917 31348940 -117434532 + AT_rich Low_complexity Low_complexity 1 23 0 442 261 93 68 chr11 31348964 31349317 -117434155 + L1ME4a LINE L1 5759 6120 -1 287 250 14 0 chr11 31350452 31350524 -117432948 + MLT1K LTR MaLR 512 584 -4 239 336 90 8 chr11 31350536 31350658 -117432814 - MARNA DNA Mariner -59 527 396 748 261 66 17 chr11 31350703 31350944 -117432528 - MIR SINE MIR -2 260 8 2070 65 8 15 chr11 31351063 31351326 -117432146 + L1PA8 LINE L1 5912 6172 0 3675 175 18 2 chr11 31351378 31352007 -117431465 + L1MB3 LINE L1 5545 6183 0 212 267 60 93 chr11 31352064 31352214 -117431258 - L2 LINE L2 0 3313 3169 268 320 97 0 chr11 31352438 31352541 -117430931 - MIR SINE MIR -1 261 149 986 278 83 62 chr11 31352544 31353124 -117430348 + MLT1L LTR MaLR 7 598 -17 372 304 10 10 chr11 31353790 31353892 -117429580 + MIR SINE MIR 35 136 -72 189 195 0 0 chr11 31353997 31354038 -117429434 + T-rich Low_complexity Low_complexity 1 41 0 489 213 49 8 chr11 31355232 31355354 -117428118 - MIR SINE MIR -46 216 90 272 271 73 21 chr11 31356242 31356338 -117427134 - L2 LINE L2 -4 3309 3209 234 353 69 0 chr11 31357238 31357354 -117426118 + MIR SINE MIR 66 189 -73 924 228 5 31 chr11 31357543 31357736 -117425736 - MER5A DNA MER1_type 0 189 2 1166 289 60 24 chr11 31357763 31358410 -117425062 - L2 LINE L2 -8 3305 2438 295 253 67 0 chr11 31358516 31358591 -117424881 + MER91C DNA MER1_type 7 86 -54 773 271 44 4 chr11 31359452 31359677 -117423795 - MIR SINE MIR -1 261 28 2109 112 0 7 chr11 31359702 31360017 -117423455 - AluSg SINE Alu 0 313 1 429 296 114 36 chr11 31360065 31360285 -117423187 - MIR SINE MIR -6 256 20 2031 148 0 0 chr11 31360418 31360723 -117422749 + AluSx SINE Alu 1 305 -7 397 295 120 47 chr11 31360879 31361130 -117422342 + L2 LINE L2 2779 3057 -256 2218 217 16 16 chr11 31361912 31362424 -117421048 - Charlie1b DNA MER1_type 0 523 12 1157 321 50 23 chr11 31362448 31362890 -117420582 - MLT1K LTR MaLR -97 491 38 1344 165 30 76 chr11 31362892 31363195 -117420277 + AluJo SINE Alu 1 289 -23 245 310 100 0 chr11 31363305 31363405 -117420067 - L2 LINE L2 -2 3270 3161 * 533 233 17 0 chr11 31363385 31363501 -117419971 - MIR SINE MIR -4 258 141 221 299 70 90 chr11 31363481 31363682 -117419790 - L2 LINE L2 -44 3228 3032 * 234 0 0 0 chr11 31363772 31363798 -117419674 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1742 176 0 0 chr11 31363798 31364077 -117419395 - AluJb SINE Alu -32 280 2 311 286 181 18 chr11 31365163 31365390 -117418082 - L2 LINE L2 -201 3071 2808 198 0 0 0 chr11 31365832 31365854 -117417618 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 22 0 0 0 chr11 31366872 31366894 -117416578 + AT_rich Low_complexity Low_complexity 1 22 0 542 333 23 6 chr11 31367657 31367834 -117415638 + MIR SINE MIR 13 192 -70 222 37 0 0 chr11 31368820 31368847 -117414625 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 2226 123 0 0 chr11 31369072 31369373 -117414099 + AluSx SINE Alu 1 301 -11 2121 130 7 0 chr11 31369410 31369709 -117413763 + AluSx SINE Alu 1 301 -11 247 291 114 0 chr11 31370307 31370386 -117413086 + L2 LINE L2 3192 3279 -34 225 94 0 0 chr11 31370396 31370428 -117413044 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 1064 276 43 88 chr11 31370428 31371190 -117412282 - L2 LINE L2 -3 3310 2597 1826 165 13 0 chr11 31371190 31371493 -117411979 + AluSx SINE Alu 6 312 0 1064 276 43 88 chr11 31371493 31371653 -117411819 - L2 LINE L2 -716 2597 2431 21 0 0 0 chr11 31371653 31371674 -117411798 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr11 31372593 31372613 -117410859 + (TTTCC)n Simple_repeat Simple_repeat 5 24 0 213 304 36 0 chr11 31374026 31374082 -117409390 - MIR3 SINE MIR -40 168 111 194 290 80 30 chr11 31374160 31374260 -117409212 - L2 LINE L2 0 3272 3168 689 128 6 83 chr11 31374583 31374722 -117408750 - MER69 DNA AcHobo -1 2525 2398 1827 148 3 46 chr11 31374722 31375046 -117408426 + AluJb SINE Alu 1 310 -2 689 128 6 83 chr11 31375046 31375062 -117408410 - MER69 DNA AcHobo -128 2398 2382 279 132 264 0 chr11 31375216 31375269 -117408203 - MER69 DNA AcHobo -2459 67 1 206 293 67 13 chr11 31375272 31375347 -117408125 - MIR SINE MIR -153 109 31 370 270 59 53 chr11 31375351 31375487 -117407985 + MIR SINE MIR 22 156 -106 2138 114 0 0 chr11 31375487 31375768 -117407704 + AluSq SINE Alu 1 281 -32 647 0 26 0 chr11 31375768 31375846 -117407626 + (TAAAA)n Simple_repeat Simple_repeat 1 80 0 370 270 59 53 chr11 31375846 31375860 -117407612 + MIR SINE MIR 155 174 -88 974 282 131 31 chr11 31375922 31376379 -117407093 + MLT1J LTR MaLR 1 503 -8 490 264 43 45 chr11 31376720 31376889 -117406583 - MIR SINE MIR -62 146 30 1575 282 44 31 chr11 31377022 31377540 -117405932 - MLT1H1 LTR MaLR -23 532 8 2179 157 12 56 chr11 31377612 31377842 -117405630 - MLT1B LTR MaLR 0 390 184 2277 68 54 0 chr11 31377842 31378122 -117405350 - AluSp SINE Alu -18 295 1 2179 157 12 56 chr11 31378122 31378299 -117405173 - MLT1B LTR MaLR -206 184 1 252 343 65 9 chr11 31378316 31378424 -117405048 - MIR SINE MIR -65 143 30 404 318 0 0 chr11 31379300 31379407 -117404065 + MIR SINE MIR 3 109 -153 245 294 24 0 chr11 31379666 31379751 -117403721 + MIR3 SINE MIR 106 192 -16 1788 190 0 0 chr11 31379830 31380140 -117403332 + AluJb SINE Alu 3 312 0 276 362 17 23 chr11 31380655 31380832 -117402640 - L3 LINE CR1 -351 1226 1051 237 253 165 0 chr11 31381201 31381280 -117402192 + MER5A DNA MER1_type 11 102 -87 244 286 0 12 chr11 31386799 31386883 -117396589 + G-rich Low_complexity Low_complexity 2 84 0 311 202 11 0 chr11 31388022 31388111 -117395361 + CT-rich Low_complexity Low_complexity 3 92 0 210 91 0 0 chr11 31389226 31389259 -117394213 + (GGGGA)n Simple_repeat Simple_repeat 4 36 0 288 0 0 0 chr11 31389926 31389958 -117393514 + (CA)n Simple_repeat Simple_repeat 2 33 0 465 84 0 0 chr11 31391333 31391404 -117392068 + (TG)n Simple_repeat Simple_repeat 2 72 0 301 311 192 0 chr11 31391951 31392102 -117391370 - MIR SINE MIR -51 211 32 24 32 0 0 chr11 31392200 31392231 -117391241 + AT_rich Low_complexity Low_complexity 1 31 0 285 301 14 0 chr11 31392439 31392512 -117390960 - L3 LINE CR1 -4 1573 1500 277 385 10 0 chr11 31392723 31392819 -117390653 - L2 LINE L2 -36 3236 3140 209 327 64 45 chr11 31392887 31393043 -117390429 + MIR3 SINE MIR 21 179 -29 22 0 0 0 chr11 31393859 31393881 -117389591 + AT_rich Low_complexity Low_complexity 1 22 0 1696 159 76 0 chr11 31394621 31394910 -117388562 + AluSx SINE Alu 2 312 0 1258 177 70 49 chr11 31394927 31395004 -117388468 - Charlie4a DNA MER1_type -1470 491 417 2160 122 7 0 chr11 31395004 31395299 -117388173 + AluSx SINE Alu 1 297 -15 1258 177 70 49 chr11 31395299 31395565 -117387907 - Charlie4a DNA MER1_type -1544 417 141 396 267 0 43 chr11 31396109 31396225 -117387247 - MIR SINE MIR -126 136 26 652 215 107 30 chr11 31396516 31396749 -117386723 - MIR SINE MIR 0 262 12 224 305 37 12 chr11 31398134 31398216 -117385256 - MIR SINE MIR -99 109 26 2436 89 0 0 chr11 31398691 31398994 -117384478 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr11 31399061 31399084 -117384388 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr11 31399307 31399338 -117384134 + AT_rich Low_complexity Low_complexity 1 31 0 636 330 122 6 chr11 31401155 31401467 -117382005 + L3b LINE CR1 1102 1449 -134 243 259 95 52 chr11 31401894 31402010 -117381462 + L2 LINE L2 3191 3311 -2 243 278 52 35 chr11 31404946 31405061 -117378411 + MIR SINE MIR 37 153 -109 280 246 77 113 chr11 31405419 31405614 -117377858 - MER5A DNA MER1_type -1 188 1 261 0 0 0 chr11 31407342 31407371 -117376101 + (T)n Simple_repeat Simple_repeat 1 29 0 261 0 0 0 chr11 31408272 31408301 -117375171 + (T)n Simple_repeat Simple_repeat 1 29 0 288 0 0 0 chr11 31409331 31409363 -117374109 + (TC)n Simple_repeat Simple_repeat 2 33 0 252 143 0 0 chr11 31409363 31409405 -117374067 + (TG)n Simple_repeat Simple_repeat 2 43 0 183 80 0 0 chr11 31409405 31409430 -117374042 + (GA)n Simple_repeat Simple_repeat 2 26 0 23 92 0 0 chr11 31410654 31410719 -117372753 + AT_rich Low_complexity Low_complexity 1 65 0 722 37 0 0 chr11 31410897 31410978 -117372494 - AluY SINE Alu -20 291 211 820 233 21 10 chr11 31410978 31411265 -117372207 - L1MC4a LINE L1 -1867 5941 5486 458 230 48 16 chr11 31413366 31413492 -117369980 + MIR SINE MIR 37 166 -96 200 275 50 38 chr11 31416650 31416730 -117366742 - MER5A DNA MER1_type -102 87 7 2488 52 0 0 chr11 31417130 31417419 -117366053 - L1PA5 LINE L1 -1 6804 6516 30010 55 6 1 chr11 31417426 31421565 -117361907 - L1PA5 LINE L1 -396 6409 2241 23 0 0 0 chr11 31423371 31423394 -117360078 + AT_rich Low_complexity Low_complexity 1 23 0 798 318 40 61 chr11 31425114 31425707 -117357765 + L3 LINE CR1 641 1270 -307 224 244 192 0 chr11 31425833 31425911 -117357561 + L3 LINE CR1 1250 1342 -235 1748 168 0 4 chr11 31426024 31426304 -117357168 + AluJb SINE Alu 1 279 -33 227 77 0 26 chr11 31426305 31426344 -117357128 + (GGAA)n Simple_repeat Simple_repeat 1 38 0 212 298 0 0 chr11 31427072 31427129 -117356343 - L2 LINE L2 0 3272 3216 180 0 0 0 chr11 31428037 31428057 -117355415 + (TG)n Simple_repeat Simple_repeat 1 20 0 1948 91 14 35 chr11 31428503 31428789 -117354683 + L1PA10 LINE L1 5887 6166 -2 371 306 45 30 chr11 31429058 31429260 -117354212 - MIR SINE MIR -32 230 30 26 0 0 0 chr11 31429480 31429506 -117353966 + AT_rich Low_complexity Low_complexity 1 26 0 33490 102 9 55 chr11 31429632 31436076 -117347396 + L1PA7 LINE L1 10 6144 -10 27 49 0 0 chr11 31436076 31436117 -117347355 + AT_rich Low_complexity Low_complexity 1 41 0 274 309 69 51 chr11 31436132 31436307 -117347165 - MER5B DNA MER1_type 0 178 1 547 259 198 15 chr11 31436531 31436728 -117346744 + MIR SINE MIR 30 262 0 338 256 37 0 chr11 31437243 31437325 -117346147 + MIR SINE MIR 33 117 -145 271 285 54 46 chr11 31437777 31437907 -117345565 + L2 LINE L2 3177 3307 -6 11326 114 14 7 chr11 31439263 31440898 -117342574 - L1P LINE L1 -4497 1649 3 1673 165 4 22 chr11 31441424 31441697 -117341775 - AluJo SINE Alu -44 268 1 22 0 0 0 chr11 31441931 31441953 -117341519 + AT_rich Low_complexity Low_complexity 1 22 0 430 264 54 8 chr11 31442521 31442650 -117340822 + MIR SINE MIR 72 206 -56 22 35 0 0 chr11 31442918 31442947 -117340525 + AT_rich Low_complexity Low_complexity 1 29 0 2237 143 3 56 chr11 31443332 31443688 -117339784 + MER1B DNA MER1_type 1 337 0 1562 107 14 5 chr11 31443976 31444192 -117339280 + AluSg/x SINE Alu 83 300 -10 367 254 71 47 chr11 31444671 31444840 -117338632 - L2 LINE L2 -712 2602 2430 322 118 0 0 chr11 31445401 31445452 -117338020 - AluSp/q SINE Alu -1 302 252 * 388 165 51 0 chr11 31445447 31445526 -117337946 + HsTC2 DNA Tc2 1816 1898 0 180 0 0 0 chr11 31446537 31446557 -117336915 + (CA)n Simple_repeat Simple_repeat 1 20 0 287 327 168 0 chr11 31446879 31446992 -117336480 + MIR3 SINE MIR 36 167 -41 211 102 41 20 chr11 31448914 31448963 -117334509 + (TTTG)n Simple_repeat Simple_repeat 3 52 0 204 237 0 17 chr11 31450892 31450951 -117332521 + T-rich Low_complexity Low_complexity 2 59 0 24 77 0 0 chr11 31451109 31451161 -117332311 + AT_rich Low_complexity Low_complexity 1 52 0 31 68 0 0 chr11 31451221 31451280 -117332192 + AT_rich Low_complexity Low_complexity 1 59 0 939 193 34 0 chr11 31454391 31454567 -117328905 + MER5A DNA MER1_type 8 189 0 895 194 42 15 chr11 31456532 31456745 -117326727 + MIR SINE MIR 38 252 -10 547 276 42 36 chr11 31457240 31457432 -117326040 - MIR SINE MIR -21 241 49 460 302 148 10 chr11 31458417 31458619 -117324853 - MIR SINE MIR -25 237 8 627 185 81 64 chr11 31458620 31458732 -117324740 + MER5B DNA MER1_type 3 121 -57 2891 13 0 0 chr11 31458732 31459045 -117324427 - AluYb8 SINE Alu -4 314 2 627 185 81 64 chr11 31459045 31459105 -117324367 + MER5B DNA MER1_type 121 178 0 257 314 51 64 chr11 31460261 31460417 -117323055 + L2 LINE L2 2551 2704 -610 341 270 90 0 chr11 31460731 31460842 -117322630 - MIR SINE MIR -94 168 48 312 91 0 0 chr11 31460890 31460934 -117322538 + (TGGA)n Simple_repeat Simple_repeat 1 44 0 180 335 80 35 chr11 31460967 31461167 -117322305 + L2 LINE L2 2749 2957 -357 542 187 22 14 chr11 31461225 31461364 -117322108 - MER53 DNA DNA -49 140 1 1723 172 0 30 chr11 31461582 31461878 -117321594 + AluJo SINE Alu 1 287 -25 182 218 136 73 chr11 31462172 31462282 -117321190 + L2 LINE L2 3156 3272 0 666 224 17 62 chr11 31462395 31462574 -117320898 + MER5B DNA MER1_type 2 172 -6 368 312 15 79 chr11 31463193 31463330 -117320142 + MIR3 SINE MIR 14 135 -73 1175 189 80 117 chr11 31463330 31463706 -117319766 - MLT1A1 LTR MaLR -2 363 2 368 312 15 79 chr11 31463706 31463770 -117319702 + MIR3 SINE MIR 135 202 -6 569 317 24 0 chr11 31463878 31464045 -117319427 + MIR3 SINE MIR 24 194 -14 207 161 0 0 chr11 31464207 31464238 -117319234 + polypurine Low_complexity Low_complexity 1 31 0 511 272 63 11 chr11 31465000 31465191 -117318281 + MIR SINE MIR 6 206 -56 395 238 154 42 chr11 31465595 31465738 -117317734 - MIR SINE MIR -102 160 2 1959 153 0 0 chr11 31465771 31466059 -117317413 - AluSx SINE Alu -24 288 1 382 277 92 0 chr11 31466451 31466570 -117316902 + MIR3 SINE MIR 73 202 -6 2931 178 73 68 chr11 31467086 31467773 -117315699 + LTR8 LTR ERV1 2 691 0 3333 98 162 0 chr11 31467773 31468286 -117315186 + HUERS-P1 LTR ERV1 1 596 -5667 24 0 0 0 chr11 31519357 31519381 -117264091 + GC_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr11 31519403 31519431 -117264041 + GC_rich Low_complexity Low_complexity 1 28 0 384 59 0 0 chr11 31520214 31520265 -117263207 + (TGG)n Simple_repeat Simple_repeat 2 52 0 2443 61 3 3 chr11 31521057 31521368 -117262104 + AluSp SINE Alu 1 311 -2 327 241 219 22 chr11 31521632 31521769 -117261703 - MIR3 SINE MIR -22 186 23 1616 119 45 68 chr11 31521891 31522202 -117261270 - AluSq SINE Alu -9 304 1 303 274 53 21 chr11 31522232 31522327 -117261145 - MER5A DNA MER1_type -86 103 6 701 128 8 45 chr11 31522602 31522735 -117260737 - L1MB3 LINE L1 -298 5885 5758 390 239 31 101 chr11 31523697 31523856 -117259616 - L3 LINE CR1 -89 1488 1341 1648 134 0 33 chr11 31523898 31524173 -117259299 - AluJo SINE Alu -7 305 40 504 229 61 78 chr11 31524465 31524696 -117258776 + MIR SINE MIR 1 227 -35 2082 200 41 52 chr11 31525814 31526049 -117257423 + L1ME1 LINE L1 5581 5817 -349 1710 178 3 10 chr11 31526049 31526353 -117257119 + AluJo SINE Alu 1 302 -10 2082 200 41 52 chr11 31526353 31526678 -117256794 + L1ME1 LINE L1 5817 6135 -31 2188 102 0 31 chr11 31526719 31527042 -117256430 - AluSq SINE Alu 0 313 1 1923 108 0 0 chr11 31527681 31527932 -117255540 - AluSg SINE Alu -13 297 47 470 88 15 0 chr11 31528302 31528370 -117255102 - Alu SINE Alu -9 303 235 2193 116 3 7 chr11 31528304 31528606 -117254866 - AluSx SINE Alu -11 301 1 2215 98 0 7 chr11 31528806 31529103 -117254369 + AluSg1 SINE Alu 1 295 -14 359 216 62 52 chr11 31529172 31529269 -117254203 - MIR SINE MIR -68 140 43 420 246 6 123 chr11 31530127 31530306 -117253166 - MIR3 SINE MIR -5 203 46 202 250 238 0 chr11 31530964 31531048 -117252424 - L2 LINE L2 0 3313 3210 561 263 8 0 chr11 31533692 31533825 -117249647 - MER94 DNA DNA 0 134 1 2112 109 3 0 chr11 31533918 31534201 -117249271 + AluSx SINE Alu 1 284 -28 236 30 30 0 chr11 31534214 31534247 -117249225 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 223 286 0 0 chr11 31535072 31535128 -117248344 - L2 LINE L2 0 3272 3217 284 274 0 0 chr11 31535538 31535611 -117247861 - MER94 DNA DNA -61 73 1 544 314 21 53 chr11 31535939 31536000 -117247472 + Tigger8 DNA MER2_type 56 117 -549 812 107 0 16 chr11 31536000 31536121 -117247351 - L1PA10 LINE L1 -3 6165 6047 544 314 21 53 chr11 31536121 31536396 -117247076 + Tigger8 DNA MER2_type 117 381 -285 1339 164 5 0 chr11 31536401 31536608 -117246864 + AluJo SINE Alu 85 292 -20 1551 184 35 4 chr11 31536743 31537004 -117246468 - AluJb SINE Alu -39 273 5 712 245 37 6 chr11 31537907 31538070 -117245402 - MER5B DNA MER1_type -2 176 9 209 288 106 0 chr11 31538058 31538124 -117245348 - MIR3 SINE MIR -20 188 116 * 950 218 63 0 chr11 31538538 31538744 -117244728 + MER58A DNA MER1_type 1 219 -5 348 271 34 77 chr11 31538774 31538981 -117244491 - HAL1b LINE L1 -872 476 279 812 272 78 82 chr11 31539502 31539926 -117243546 + MLT1J LTR MaLR 1 424 -87 776 83 25 8 chr11 31539926 31540047 -117243425 - L1MB8 LINE L1 -6 6172 6050 812 272 78 82 chr11 31540047 31540133 -117243339 + MLT1J LTR MaLR 424 509 -2 257 88 0 0 chr11 31540830 31540864 -117242608 + Alu SINE Alu 255 288 -14 1784 128 8 101 chr11 31541148 31541514 -117241958 + MER1B DNA MER1_type 3 334 -3 21 0 0 0 chr11 31542238 31542259 -117241213 + AT_rich Low_complexity Low_complexity 1 21 0 736 150 33 0 chr11 31542259 31542379 -117241093 + FLAM_C SINE Alu 1 124 -19 483 275 123 0 chr11 31542569 31542740 -117240732 - L2 LINE L2 0 3313 3122 2092 102 13 58 chr11 31542979 31543292 -117240180 - AluSx SINE Alu -13 299 1 234 296 219 20 chr11 31543360 31543556 -117239916 + L2 LINE L2 2743 2977 -337 341 296 106 15 chr11 31543565 31543697 -117239775 + L2 LINE L2 3158 3301 -12 284 237 104 52 chr11 31543718 31543853 -117239619 - L2 LINE L2 -229 3084 2943 21 0 0 0 chr11 31543931 31543952 -117239520 + AT_rich Low_complexity Low_complexity 1 21 0 413 273 55 0 chr11 31543958 31544068 -117239404 - L2 LINE L2 -13 3300 3185 240 86 0 0 chr11 31544542 31544577 -117238895 + (CA)n Simple_repeat Simple_repeat 1 35 0 21 71 0 0 chr11 31544775 31544817 -117238655 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr11 31545181 31545203 -117238269 + AT_rich Low_complexity Low_complexity 1 22 0 434 293 37 37 chr11 31545205 31545369 -117238103 + MIR3 SINE MIR 24 187 -21 1070 162 6 0 chr11 31545372 31545539 -117237933 - AluJb SINE Alu -13 299 132 204 125 0 0 chr11 31545546 31545578 -117237894 + (TA)n Simple_repeat Simple_repeat 1 32 0 889 140 28 14 chr11 31545721 31545864 -117237608 - AluSg/x SINE Alu -23 289 145 272 305 158 0 chr11 31546115 31546197 -117237275 - L2 LINE L2 -39 3274 3180 2112 113 16 13 chr11 31546224 31546533 -117236939 + AluSq SINE Alu 1 310 -3 339 296 114 28 chr11 31546662 31546838 -117236634 - L2 LINE L2 -416 2898 2708 2497 153 42 24 chr11 31547337 31547794 -117235678 - MLT1C LTR MaLR -2 465 1 1559 127 3 124 chr11 31548091 31548295 -117235177 - AluSp SINE Alu -10 303 151 1974 136 0 7 chr11 31548295 31548581 -117234891 - AluSx SINE Alu -28 284 1 1559 127 3 124 chr11 31548581 31548698 -117234774 - AluSp SINE Alu -162 151 21 313 111 0 0 chr11 31548698 31548743 -117234729 - AluSp SINE Alu -256 45 1 23 33 0 0 chr11 31548958 31548988 -117234484 + AT_rich Low_complexity Low_complexity 1 30 0 649 258 148 0 chr11 31549639 31549848 -117233624 - MIR SINE MIR -21 241 2 2173 98 0 19 chr11 31550641 31550958 -117232514 + AluY SINE Alu 1 311 0 183 80 0 0 chr11 31551194 31551219 -117232253 + (A)n Simple_repeat Simple_repeat 1 25 0 767 165 82 38 chr11 31551287 31551445 -117232027 + FRAM SINE Alu 1 165 -1 1281 160 5 0 chr11 31551590 31551784 -117231688 + AluSg/x SINE Alu 99 293 -19 823 128 0 30 chr11 31552908 31553041 -117230431 + FLAM_C SINE Alu 5 133 0 1612 102 18 0 chr11 31553204 31553430 -117230042 - MER30 DNA MER1_type 0 230 1 1993 104 54 17 chr11 31553521 31553819 -117229653 - AluSx SINE Alu -3 309 1 229 259 74 25 chr11 31554425 31554506 -117228966 - MIR3 SINE MIR -36 172 88 1902 138 0 58 chr11 31554637 31554948 -117228524 + AluJb SINE Alu 1 293 -19 2498 78 0 0 chr11 31555189 31555498 -117227974 + AluSq SINE Alu 1 309 -4 196 286 12 36 chr11 31558022 31558106 -117225366 - MIR3 SINE MIR -7 201 120 222 219 0 53 chr11 31558348 31558462 -117225010 + GA-rich Low_complexity Low_complexity 3 110 0 290 357 27 18 chr11 31558672 31558784 -117224688 - MER91A DNA MER1_type -82 114 2 2312 146 93 37 chr11 31559266 31559573 -117223899 - MLT2B1 LTR ERVL -7 513 168 2182 119 0 22 chr11 31559573 31559905 -117223567 - AluSx SINE Alu 0 312 1 2312 146 93 37 chr11 31559905 31560083 -117223389 - MLT2B1 LTR ERVL -352 168 1 1728 151 6 63 chr11 31560271 31560589 -117222883 + AluJo SINE Alu 2 301 -11 462 311 52 29 chr11 31560592 31560936 -117222536 - L1ME LINE L1 -532 5632 5281 1050 211 48 0 chr11 31560938 31561147 -117222325 - MER58A DNA MER1_type -2 222 4 1420 187 30 16 chr11 31561195 31561500 -117221972 - AluJo SINE Alu -3 309 1 2485 59 7 0 chr11 31561598 31561901 -117221571 - AluSp SINE Alu -8 305 1 216 97 0 0 chr11 31562189 31562202 -117221270 + (TG)n Simple_repeat Simple_repeat 1 13 -351 2043 111 7 20 chr11 31562202 31562508 -117220964 + AluSg SINE Alu 1 302 -8 216 97 0 0 chr11 31562508 31562522 -117220950 + (TG)n Simple_repeat Simple_repeat 12 364 0 216 97 0 0 chr11 31562522 31562553 -117220919 + (TG)n Simple_repeat Simple_repeat 2 32 0 309 109 0 0 chr11 31562553 31562599 -117220873 + (CATA)n Simple_repeat Simple_repeat 2 47 0 1910 125 57 0 chr11 31562607 31562888 -117220584 + AluSx SINE Alu 2 298 -14 2165 105 16 0 chr11 31563709 31564013 -117219459 - AluSp SINE Alu -3 310 2 198 0 0 0 chr11 31564685 31564707 -117218765 + (A)n Simple_repeat Simple_repeat 1 22 0 267 79 0 0 chr11 31565054 31565092 -117218380 + (TC)n Simple_repeat Simple_repeat 2 39 0 2401 87 3 13 chr11 31565272 31565582 -117217890 - AluSx SINE Alu -5 307 1 273 297 55 23 chr11 31565675 31565803 -117217669 - MER5A DNA MER1_type -22 167 36 1041 262 104 13 chr11 31565852 31566255 -117217217 - LTR16B LTR ERVL -4 452 15 304 304 170 12 chr11 31566322 31566493 -117216979 - L3 LINE CR1 -3 1574 1377 886 111 17 0 chr11 31566546 31566663 -117216809 + FLAM_C SINE Alu 1 119 -24 231 61 0 0 chr11 31566665 31566698 -117216774 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 509 299 0 15 chr11 31567533 31567670 -117215802 + MIR SINE MIR 5 139 -123 326 345 40 14 chr11 31567683 31567831 -117215641 + MIR SINE MIR 90 241 -21 369 0 0 0 chr11 31567838 31567879 -117215593 + (CA)n Simple_repeat Simple_repeat 2 42 0 1714 166 32 3 chr11 31568124 31568407 -117215065 + AluJb SINE Alu 1 291 -21 180 179 0 0 chr11 31568419 31568458 -117215014 + GA-rich Low_complexity Low_complexity 2 40 0 188 178 67 44 chr11 31569077 31569122 -117214350 - L2 LINE L2 -6 3307 3262 661 282 87 8 chr11 31569690 31569931 -117213541 - MIR SINE MIR 0 262 3 272 357 81 46 chr11 31569943 31570187 -117213285 - L2 LINE L2 -549 2765 2500 2621 185 35 80 chr11 31570187 31570872 -117212600 - MLT1E1 LTR MaLR 0 654 1 272 357 81 46 chr11 31570872 31571022 -117212450 - L2 LINE L2 -814 2500 2357 477 257 87 58 chr11 31571610 31571816 -117211656 - MIR SINE MIR -6 256 45 207 281 18 0 chr11 31571856 31571913 -117211559 + L2 LINE L2 3004 3061 -252 366 271 108 22 chr11 31571991 31572179 -117211293 + MIR SINE MIR 8 201 -61 466 322 34 34 chr11 31572214 31572391 -117211081 + L2 LINE L2 3096 3272 0 2656 216 65 39 chr11 31574563 31575730 -117207742 - L1MD2 LINE L1 0 6359 5123 382 82 66 0 chr11 31575821 31575882 -117207590 + MLT1A2 LTR MaLR 2 66 -308 306 67 0 0 chr11 31576314 31576359 -117207113 + (TC)n Simple_repeat Simple_repeat 2 46 0 1624 236 36 41 chr11 31576675 31577231 -117206241 - L1MD3 LINE L1 -1 7994 7442 3393 233 42 53 chr11 31577275 31578259 -117205213 - L1MC4a LINE L1 -748 5398 5354 1544 198 10 16 chr11 31578259 31578573 -117204899 - AluJo SINE Alu 0 312 1 3393 233 42 53 chr11 31578573 31579046 -117204426 - L1MC4a LINE L1 -792 5354 4877 * 3925 165 23 13 chr11 31579021 31579390 -117204082 - L1PA16 LINE L1 -209 5957 5593 1991 131 3 20 chr11 31579390 31579687 -117203785 + AluSx SINE Alu 1 292 -20 3925 165 23 13 chr11 31579687 31580800 -117202672 - L1PA16 LINE L1 -573 5593 4469 228 235 59 0 chr11 31581019 31581070 -117202402 - MIR SINE MIR -79 183 130 209 250 0 0 chr11 31581289 31581333 -117202139 + L3 LINE CR1 1068 1111 -466 257 340 38 13 chr11 31581343 31581502 -117201970 + MER117 DNA MER1_type 4 166 -31 308 285 173 35 chr11 31581540 31581648 -117201824 + L3 LINE CR1 1123 1215 -362 234 0 0 0 chr11 31581648 31581674 -117201798 + (TTG)n Simple_repeat Simple_repeat 2 27 0 308 285 173 35 chr11 31581674 31581825 -117201647 + L3 LINE CR1 1215 1418 -159 242 225 0 0 chr11 31582072 31582112 -117201360 + L2 LINE L2 3219 3258 -14 198 0 0 0 chr11 31582113 31582135 -117201337 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 568 259 0 0 chr11 31582499 31582615 -117200857 + L2 LINE L2 3198 3313 0 297 274 88 18 chr11 31583910 31584023 -117199449 + L2 LINE L2 3192 3312 -1 192 125 0 0 chr11 31584302 31584334 -117199138 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1147 273 78 44 chr11 31584769 31585202 -117198270 - LTR16A LTR ERVL 0 450 3 7152 50 6 0 chr11 31585317 31586413 -117197059 - L1PA7 LINE L1 0 6154 5057 396 0 0 0 chr11 31586543 31586587 -117196885 + (TG)n Simple_repeat Simple_repeat 2 45 0 1527 183 51 70 chr11 31586597 31586683 -117196789 + MLT1A1 LTR MaLR 1 87 -278 2288 104 7 0 chr11 31586683 31586982 -117196490 + AluSq SINE Alu 1 301 -12 1527 183 51 70 chr11 31586982 31587267 -117196205 + MLT1A1 LTR MaLR 87 365 0 2175 132 34 14 chr11 31587872 31588229 -117195243 + THE1B LTR MaLR 1 364 0 2176 113 0 10 chr11 31588254 31588563 -117194909 + AluSc SINE Alu 1 306 -3 459 181 30 30 chr11 31588738 31588871 -117194601 - Charlie5 DNA MER1_type -90 2522 2390 2316 108 25 3 chr11 31589246 31589608 -117193864 - L1PB1 LINE L1 0 6151 5782 247 186 0 30 chr11 31589633 31589800 -117193672 + (TA)n Simple_repeat Simple_repeat 2 163 0 450 191 0 36 chr11 31589812 31590320 -117193152 + (TA)n Simple_repeat Simple_repeat 1 489 0 354 165 0 33 chr11 31590418 31590600 -117192872 + (TA)n Simple_repeat Simple_repeat 2 177 0 964 113 6 6 chr11 31590632 31590792 -117192680 - L1PB1 LINE L1 -358 5793 5634 309 329 51 7 chr11 31590827 31590964 -117192508 - HAL1 LINE L1 -742 1765 1623 1901 130 51 10 chr11 31591368 31591661 -117191811 - AluSq SINE Alu -8 305 1 261 291 35 0 chr11 31591770 31591856 -117191616 - HAL1 LINE L1 -884 1623 1535 2374 81 0 37 chr11 31591899 31592221 -117191251 - AluSp SINE Alu -3 310 1 900 103 16 4 chr11 31592249 31592420 -117191052 - L1MB1 LINE L1 -1 6167 6025 377 307 79 82 chr11 31592422 31592826 -117190646 - HAL1 LINE L1 -1070 1437 1035 2288 93 0 7 chr11 31593803 31594105 -117189367 + AluSc SINE Alu 1 300 -9 400 323 137 47 chr11 31594733 31595179 -117188293 - L2 LINE L2 -612 2702 2217 626 306 15 48 chr11 31595798 31596069 -117187403 + L2 LINE L2 2492 2753 -561 901 216 60 5 chr11 31596095 31596294 -117187178 - MER58A DNA MER1_type -14 210 1 428 335 16 11 chr11 31597327 31597512 -117185960 + L2 LINE L2 2791 2976 -338 279 330 63 36 chr11 31597601 31597812 -117185660 + MIR SINE MIR 16 229 -33 396 0 0 0 chr11 31598455 31598499 -117184973 + (CA)n Simple_repeat Simple_repeat 2 45 0 482 243 44 77 chr11 31599099 31599280 -117184192 + MLT1L LTR MaLR 87 261 -354 745 226 52 44 chr11 31599352 31599604 -117183868 + HAL1 LINE L1 22 275 -2232 566 247 89 11 chr11 31599606 31599796 -117183676 + MLT1L LTR MaLR 411 615 0 1463 78 15 86 chr11 31599995 31600263 -117183209 - L1MA2 LINE L1 0 6304 6056 189 0 0 0 chr11 31600266 31600287 -117183185 + (TG)n Simple_repeat Simple_repeat 2 22 0 244 284 170 35 chr11 31600671 31600900 -117182572 - L3b LINE CR1 -133 1450 1191 1717 148 48 15 chr11 31601481 31601752 -117181720 - AluJb SINE Alu -24 288 9 465 137 0 0 chr11 31602414 31602487 -117180985 + MLT2B1 LTR ERVL 9 81 -439 776 245 51 65 chr11 31602618 31602969 -117180503 + MLT2B3 LTR ERVL 86 431 -123 1631 153 121 7 chr11 31602970 31603277 -117180195 - MER2 DNA MER2_type -1 343 2 339 25 0 0 chr11 31603277 31603317 -117180155 + (CA)n Simple_repeat Simple_repeat 2 41 0 324 94 0 19 chr11 31603334 31603373 -117180099 + Ricksha DNA DNA 866 903 -1143 30402 153 43 26 chr11 31603373 31609026 -117174446 + ERVL-B3-B2 LTR ERVL 2 5752 -12 2017 171 17 62 chr11 31609035 31609515 -117173957 + MLT2B2 LTR ERVL 1 464 0 406 265 49 43 chr11 31610589 31610751 -117172721 - L1ME4a LINE L1 -3 6118 5956 293 314 36 9 chr11 31610833 31611056 -117172416 - L1ME4a LINE L1 -277 5844 5616 2257 121 0 0 chr11 31611150 31611455 -117172017 - AluSx SINE Alu -7 305 1 251 0 0 56 chr11 31611560 31611596 -117171876 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 189 290 16 16 chr11 31612383 31612445 -117171027 - L3 LINE CR1 -228 1349 1288 371 269 86 0 chr11 31612623 31612716 -117170756 - MIR SINE MIR -118 144 44 2316 110 0 0 chr11 31613175 31613474 -117169998 + AluSx SINE Alu 1 299 -13 358 268 24 12 chr11 31613638 31613720 -117169752 + MIR3 SINE MIR 84 166 -42 191 346 13 58 chr11 31614009 31614113 -117169359 + L2 LINE L2 1809 1905 -1409 2089 155 3 15 chr11 31614113 31614454 -117169018 + MER1B DNA MER1_type 1 337 0 191 346 13 58 chr11 31614454 31614505 -117168967 + L2 LINE L2 1905 1957 -1357 2000 126 28 20 chr11 31614895 31615253 -117168219 + THE1C LTR MaLR 15 375 0 189 147 0 0 chr11 31615598 31615632 -117167840 + (TC)n Simple_repeat Simple_repeat 2 35 0 2662 234 42 19 chr11 31615760 31616568 -117166904 - L1ME1 LINE L1 -24 6142 5311 1072 189 4 16 chr11 31616591 31616835 -117166637 - L1MA9 LINE L1 -1 6311 6071 538 229 14 0 chr11 31616839 31616983 -117166489 - L1ME1 LINE L1 -1487 4659 4514 3485 238 62 15 chr11 31616985 31617730 -117165742 - L1ME4a LINE L1 -824 5322 4500 2349 92 13 0 chr11 31617730 31618036 -117165436 - AluSp SINE Alu -3 310 1 3485 238 62 15 chr11 31618036 31618470 -117165002 - L1ME4a LINE L1 -1646 4500 4088 2540 107 0 3 chr11 31618470 31618833 -117164639 - THE1C LTR MaLR 0 375 14 1819 235 61 16 chr11 31618848 31619418 -117164054 - L1ME4a LINE L1 -2054 4092 3497 879 245 89 3 chr11 31619449 31619821 -117163651 - L1ME4a LINE L1 -2742 3404 3001 392 292 157 11 chr11 31620597 31620618 -117162854 + MIR SINE MIR 3 20 -242 9672 169 20 18 chr11 31620618 31621282 -117162190 + L1PA15 LINE L1 3499 4160 -2005 2115 142 6 3 chr11 31621282 31621593 -117161879 + AluSq SINE Alu 1 312 -1 9672 169 20 18 chr11 31621593 31623577 -117159895 + L1PA15 LINE L1 4160 6165 0 392 292 157 11 chr11 31623577 31623733 -117159739 + MIR SINE MIR 20 206 -56 214 326 37 59 chr11 31623738 31623873 -117159599 + MIR SINE MIR 10 141 -67 385 177 18 18 chr11 31623881 31623994 -117159478 + (TAGA)n Simple_repeat Simple_repeat 1 113 0 1108 286 62 47 chr11 31623995 31624811 -117158661 + L2 LINE L2 2364 3197 -116 228 67 0 0 chr11 31624811 31624841 -117158631 + (CA)n Simple_repeat Simple_repeat 1 30 0 1108 286 62 47 chr11 31624841 31624927 -117158545 + L2 LINE L2 3197 3280 -33 204 200 0 0 chr11 31624954 31624999 -117158473 + C-rich Low_complexity Low_complexity 1 45 0 202 330 212 0 chr11 31625156 31625274 -117158198 - L2 LINE L2 -7 3265 3123 210 224 47 47 chr11 31625432 31625517 -117157955 + MIR3 SINE MIR 123 207 -1 217 89 44 0 chr11 31626354 31626399 -117157073 + (CA)n Simple_repeat Simple_repeat 2 48 0 510 276 109 6 chr11 31626453 31626609 -117156863 - MIR SINE MIR -59 203 32 601 222 0 8 chr11 31626692 31626809 -117156663 - MER5B DNA MER1_type 0 178 63 710 182 0 0 chr11 31626814 31626935 -117156537 - AluJb SINE Alu -2 310 190 281 175 0 95 chr11 31626938 31627001 -117156471 - MER5B DNA MER1_type -120 58 2 376 309 22 36 chr11 31627006 31627145 -117156327 + MER5A DNA MER1_type 52 188 -1 227 340 47 0 chr11 31627194 31627300 -117156172 + MIR SINE MIR 43 153 -55 435 263 45 23 chr11 31628002 31628135 -117155337 - MER5B DNA MER1_type -35 143 8 24 85 0 0 chr11 31628865 31628924 -117154548 + AT_rich Low_complexity Low_complexity 1 59 0 238 206 29 69 chr11 31629310 31629412 -117154060 + MER103 DNA DNA 66 163 -3 377 297 109 17 chr11 31629723 31629898 -117153574 - MIR SINE MIR -1 261 71 311 341 38 30 chr11 31630372 31630504 -117152968 + MIR SINE MIR 124 256 -6 335 171 34 111 chr11 31631352 31631469 -117152003 - MIR SINE MIR -50 212 105 2148 114 0 13 chr11 31631618 31631925 -117151547 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr11 31632163 31632184 -117151288 + AT_rich Low_complexity Low_complexity 1 21 0 202 365 0 0 chr11 31633404 31633467 -117150005 - L2 LINE L2 -9 3263 3201 229 278 56 37 chr11 31633520 31633628 -117149844 - L2 LINE L2 -4 3268 3159 685 277 117 73 chr11 31633684 31634260 -117149212 + L2 LINE L2 2592 3188 -125 965 219 136 79 chr11 31634260 31634629 -117148843 + L2 LINE L2 2318 2713 -601 2168 103 6 32 chr11 31634629 31634941 -117148531 + AluSq SINE Alu 1 304 -9 965 219 136 79 chr11 31634941 31634977 -117148495 + L2 LINE L2 2713 2746 -568 775 151 0 8 chr11 31634981 31635100 -117148372 + FLAM_C SINE Alu 1 118 -15 21 0 0 0 chr11 31635100 31635121 -117148351 + AT_rich Low_complexity Low_complexity 1 21 0 209 68 136 23 chr11 31635133 31635177 -117148295 + L2 LINE L2 2736 2784 -530 1348 162 30 60 chr11 31635188 31635522 -117147950 + MER33 DNA MER1_type 1 324 0 3841 240 82 141 chr11 31635537 31636139 -117147333 - L2 LINE L2 -1095 2219 1583 2180 134 0 6 chr11 31636139 31636453 -117147019 + AluSx SINE Alu 1 312 0 3841 240 82 141 chr11 31636453 31637241 -117146231 - L2 LINE L2 -1731 1583 925 601 135 0 0 chr11 31637241 31637330 -117146142 + 5S rRNA rRNA 2 90 -31 3841 240 82 141 chr11 31637330 31638170 -117145302 - L2 LINE L2 -2389 925 37 22 0 0 0 chr11 31638994 31639016 -117144456 + AT_rich Low_complexity Low_complexity 1 22 0 250 353 88 22 chr11 31639110 31639246 -117144226 - L2 LINE L2 -5 3267 3123 281 326 131 11 chr11 31639283 31639458 -117144014 - L2 LINE L2 -236 3036 2841 1106 178 0 72 chr11 31640206 31640442 -117143030 - MER20 DNA MER1_type 0 219 1 211 224 0 17 chr11 31640534 31640592 -117142880 + (CAA)n Simple_repeat Simple_repeat 3 59 0 194 311 151 19 chr11 31640625 31640731 -117142741 + L2 LINE L2 3122 3241 -31 1611 141 48 12 chr11 31640898 31641146 -117142326 + AluSq SINE Alu 5 261 -52 522 132 9 19 chr11 31641147 31641253 -117142219 + GA-rich Low_complexity Low_complexity 4 108 0 1218 61 0 22 chr11 31641255 31641435 -117142037 + (GAAA)n Simple_repeat Simple_repeat 3 178 0 747 282 29 96 chr11 31641923 31642370 -117141102 + MLT1J LTR MaLR 1 417 -94 340 383 40 7 chr11 31643063 31643212 -117140260 - L2 LINE L2 -18 3254 3101 2583 153 24 2 chr11 31643423 31643840 -117139632 + MSTB LTR MaLR 1 426 0 2353 91 10 0 chr11 31644102 31644410 -117139062 - AluSq SINE Alu -2 311 1 436 315 7 7 chr11 31644888 31645031 -117138441 - MIR SINE MIR -32 230 88 286 221 0 65 chr11 31645082 31645159 -117138313 + L1MC4a LINE L1 7322 7393 -415 2112 149 3 0 chr11 31645203 31645511 -117137961 + AluSx SINE Alu 3 311 -1 43 35 0 0 chr11 31645652 31645709 -117137763 + AT_rich Low_complexity Low_complexity 1 57 0 492 283 59 33 chr11 31645764 31646153 -117137319 + L1MC5 LINE L1 7540 7938 -23 198 0 0 0 chr11 31646394 31646416 -117137056 + (T)n Simple_repeat Simple_repeat 1 22 0 837 176 0 0 chr11 31647438 31647569 -117135903 - FLAM_C SINE Alu -1 132 2 797 187 47 0 chr11 31647642 31647813 -117135659 - MER3 DNA MER1_type 0 209 31 280 346 30 0 chr11 31648751 31648852 -117134620 - L2 LINE L2 -258 3055 2952 183 409 21 0 chr11 31648900 31648993 -117134479 - L2 LINE L2 -430 2884 2790 195 378 11 11 chr11 31649138 31649228 -117134244 - L2 LINE L2 -296 2976 2887 325 310 110 0 chr11 31650483 31650638 -117132834 - L1ME4a LINE L1 -113 6008 5837 183 303 30 15 chr11 31650698 31650764 -117132708 + MIR SINE MIR 9 75 -187 209 207 35 35 chr11 31650795 31650853 -117132619 + MIR SINE MIR 173 230 -32 310 284 61 68 chr11 31652271 31652419 -117131053 + L1MEd LINE L1 3 149 -5970 24 0 0 0 chr11 31652846 31652870 -117130602 + AT_rich Low_complexity Low_complexity 1 24 0 323 378 33 22 chr11 31652876 31653151 -117130321 + L1 LINE L1 4934 5211 -935 185 446 0 9 chr11 31653166 31653278 -117130194 - L3 LINE CR1 -946 631 521 198 0 0 0 chr11 31653419 31653441 -117130031 + (TTCA)n Simple_repeat Simple_repeat 4 25 0 192 262 0 0 chr11 31653452 31653494 -117129978 - MIR SINE MIR -10 252 211 610 234 8 0 chr11 31653542 31653666 -117129806 - L2 LINE L2 0 3313 3189 412 258 42 90 chr11 31654689 31654856 -117128616 - MIR SINE MIR -98 164 6 1683 203 37 8 chr11 31655662 31656017 -117127455 - MLT1A1 LTR MaLR 0 365 1 809 297 26 4 chr11 31656065 31656338 -117127134 + LTR16A LTR ERVL 166 444 -6 232 197 0 14 chr11 31657196 31657267 -117126205 - L1ME4a LINE L1 0 6121 6052 713 218 0 0 chr11 31657333 31657466 -117126006 - FLAM_A SINE Alu 0 133 1 203 272 88 61 chr11 31657739 31657853 -117125619 - L2 LINE L2 -4 3268 3152 485 222 208 0 chr11 31657877 31658021 -117125451 - L2 LINE L2 -2 3311 3138 1662 268 12 33 chr11 31658021 31658533 -117124939 + MER74B LTR ERVL 55 555 -67 1204 223 39 18 chr11 31658592 31658929 -117124543 - MER2 DNA MER2_type 0 344 1 371 288 0 34 chr11 31659118 31659264 -117124208 + C-rich Low_complexity Low_complexity 2 142 0 409 222 78 11 chr11 31659378 31659468 -117124004 - MER5B DNA MER1_type -81 97 2 2287 59 0 18 chr11 31662845 31663131 -117120341 - AluY SINE Alu -30 281 1 214 264 11 81 chr11 31663439 31663526 -117119946 - MER91A DNA MER1_type -114 82 2 218 271 43 14 chr11 31663918 31663988 -117119484 - MIR SINE MIR -117 145 74 267 268 171 0 chr11 31664268 31664350 -117119122 + MIR SINE MIR 58 153 -109 499 216 50 16 chr11 31665832 31665960 -117117512 + MIR SINE MIR 55 194 -65 2263 107 0 13 chr11 31666052 31666369 -117117103 + AluSq SINE Alu 1 313 0 2133 129 0 0 chr11 31666739 31667033 -117116439 - AluSg SINE Alu -15 295 2 2245 108 0 0 chr11 31667043 31667340 -117116132 - AluSx SINE Alu -15 297 1 1564 160 92 34 chr11 31667807 31668132 -117115340 + MER2 DNA MER2_type 1 344 0 2098 108 7 0 chr11 31668273 31668579 -117114893 + AluSx SINE Alu 1 308 -4 524 232 93 0 chr11 31670286 31670437 -117113035 + MIR3 SINE MIR 36 200 -8 1577 161 92 4 chr11 31671145 31671418 -117112054 - AluJo SINE Alu -15 297 1 1104 214 54 67 chr11 31671748 31672462 -117111010 - L1MEc LINE L1 -5095 1301 528 1868 163 7 3 chr11 31672545 31672851 -117110621 - AluSx SINE Alu -3 309 3 743 221 46 5 chr11 31672871 31673066 -117110406 + HAL1 LINE L1 1397 1599 -908 1378 237 94 18 chr11 31673066 31673500 -117109972 - MLT1C LTR MaLR 0 467 1 571 211 26 75 chr11 31673500 31673641 -117109831 + HAL1 LINE L1 1595 1741 -766 1021 185 0 0 chr11 31673641 31673798 -117109674 + FRAM SINE Alu 1 157 -9 1899 117 71 0 chr11 31673805 31674086 -117109386 + AluSx SINE Alu 1 301 -11 571 211 26 75 chr11 31674086 31674163 -117109309 + HAL1 LINE L1 1747 1810 -697 2744 168 28 16 chr11 31674170 31674676 -117108796 - MLT2B1 LTR ERVL -8 512 1 778 253 36 30 chr11 31674676 31674981 -117108491 + HAL1 LINE L1 1809 2115 -392 22 35 0 0 chr11 31675053 31675082 -117108390 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr11 31675100 31675138 -117108334 + AT_rich Low_complexity Low_complexity 1 38 0 339 299 27 17 chr11 31675549 31675680 -117107792 + MIR SINE MIR 2 136 -72 657 201 82 25 chr11 31675708 31675867 -117107605 + FAM SINE Alu 1 168 -7 333 306 56 19 chr11 31675917 31676025 -117107447 + MER5A DNA MER1_type 60 171 -18 227 320 49 66 chr11 31675920 31676042 -117107430 - MER5A DNA MER1_type -51 138 19 * 30 0 0 0 chr11 31676188 31676218 -117107254 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr11 31677134 31677165 -117106307 + AT_rich Low_complexity Low_complexity 1 31 0 995 199 64 66 chr11 31678534 31678927 -117104545 + L1M4 LINE L1 2974 3365 -2781 1513 180 34 82 chr11 31679244 31679281 -117104191 + AluJo SINE Alu 1 38 -274 1800 111 0 4 chr11 31679281 31679525 -117103947 - AluSq SINE Alu -70 243 1 1513 180 34 82 chr11 31679525 31679815 -117103657 + AluJo SINE Alu 38 312 0 2061 152 36 3 chr11 31879981 31880317 -116903155 - MER7A DNA MER2_type 0 346 2 340 293 138 9 chr11 31880333 31880449 -116903023 + L2 LINE L2 3142 3272 0 2790 242 39 22 chr11 31881119 31882347 -116901125 - L1ME1 LINE L1 -8 6158 4909 872 178 32 24 chr11 31882347 31882655 -116900817 - MLT1A1 LTR MaLR 0 365 10 328 320 34 34 chr11 31882731 31882878 -116900594 + MIR SINE MIR 102 248 -14 430 348 31 19 chr11 31882972 31883133 -116900339 - L2 LINE L2 0 3272 3110 360 330 186 19 chr11 31883274 31883545 -116899927 + L2 LINE L2 2685 2998 -274 202 280 27 13 chr11 31884109 31884184 -116899288 + L2 LINE L2 3014 3089 -183 21 0 0 0 chr11 31884592 31884613 -116898859 + AT_rich Low_complexity Low_complexity 1 21 0 193 354 0 52 chr11 31885260 31885355 -116898117 + MIR SINE MIR 4 93 -115 26 0 0 0 chr11 31885495 31885521 -116897951 + AT_rich Low_complexity Low_complexity 1 26 0 664 181 50 143 chr11 31886112 31886371 -116897101 - MIR SINE MIR 0 262 28 1771 253 60 45 chr11 31886431 31887128 -116896344 + L1ME3A LINE L1 5451 6158 -12 181 405 0 0 chr11 31887530 31887604 -116895868 - L2 LINE L2 -51 3221 3148 * 304 291 64 73 chr11 31887599 31887819 -116895653 + L2 LINE L2 1043 1260 -2054 845 163 4 145 chr11 31887839 31888115 -116895357 + Charlie4a DNA MER1_type 74 310 -198 952 260 4 32 chr11 31888147 31888424 -116895048 + MLT1G LTR MaLR 30 298 -292 1047 280 17 47 chr11 31888499 31888970 -116894502 - L1MEc LINE L1 -5826 570 114 415 117 67 13 chr11 31889051 31889295 -116894177 + (TA)n Simple_repeat Simple_repeat 1 257 0 330 226 0 0 chr11 31889299 31889373 -116894099 - FLAM_A SINE Alu -66 67 4 1385 211 22 0 chr11 31889776 31890093 -116893379 + MER33 DNA MER1_type 1 324 0 209 301 21 0 chr11 31890123 31890216 -116893256 + L2 LINE L2 1991 2085 -1229 364 306 8 16 chr11 31890228 31890349 -116893123 - MER5A DNA MER1_type -2 187 68 319 298 124 70 chr11 31890387 31890743 -116892729 + L2 LINE L2 2138 2512 -802 704 197 53 43 chr11 31890799 31890987 -116892485 - MER20 DNA MER1_type -1 218 29 245 347 133 0 chr11 31892175 31892273 -116891199 + L2 LINE L2 3142 3252 -20 316 208 144 40 chr11 31893861 31893986 -116889486 + MIR SINE MIR 91 228 -34 25 0 0 0 chr11 31894249 31894274 -116889198 + AT_rich Low_complexity Low_complexity 1 25 0 1288 169 260 32 chr11 31895083 31895521 -116887951 - MER92B LTR ERV1 0 636 99 1128 185 56 56 chr11 31895794 31896118 -116887354 - LTR37A LTR ERV1 -99 327 4 24 0 0 0 chr11 31896256 31896280 -116887192 + AT_rich Low_complexity Low_complexity 1 24 0 341 316 196 0 chr11 31896303 31896436 -116887036 - MER5A DNA MER1_type -10 179 21 321 162 68 14 chr11 31897049 31897123 -116886349 - MER53 DNA DNA -111 78 1 313 164 0 0 chr11 31897219 31897274 -116886198 + FRAM/FAM SINE Alu 29 78 -97 2226 122 0 0 chr11 31897756 31898050 -116885422 + AluSx SINE Alu 1 294 -18 5279 227 41 21 chr11 31898050 31900280 -116883192 - L1PA13 LINE L1 -4309 2488 142 1146 268 45 37 chr11 31900478 31900966 -116882506 - L1ME2 LINE L1 -10 6154 5663 1268 232 109 20 chr11 31900967 31901499 -116881973 - L1ME2 LINE L1 -1154 4992 4432 1007 126 117 5 chr11 31901510 31901716 -116881756 - AluSg/x SINE Alu -1 308 80 749 201 103 60 chr11 31901856 31901928 -116881544 - L1ME2 LINE L1 -1655 4491 4424 1597 114 5 0 chr11 31901928 31902147 -116881325 - AluSq SINE Alu -2 311 92 749 201 103 60 chr11 31902147 31902541 -116880931 - L1ME2 LINE L1 -1722 4424 4005 448 172 11 0 chr11 31902562 31902655 -116880817 - L1M4 LINE L1 -1197 4949 4856 261 250 8 89 chr11 31902998 31903122 -116880350 - MLT1L LTR MaLR -384 231 118 1906 151 0 3 chr11 31903139 31903465 -116880007 - AluSx SINE Alu 0 325 1 511 262 26 2 chr11 31903484 31903655 -116879817 + L1ME1 LINE L1 6007 6178 0 196 184 0 0 chr11 31904301 31904339 -116879133 + L2 LINE L2 3272 3309 -4 2122 163 54 15 chr11 31904394 31904804 -116878668 + MSTB LTR MaLR 1 426 0 347 273 41 76 chr11 31904934 31905106 -116878366 - MLT1I LTR MaLR -10 399 234 223 216 14 14 chr11 31905331 31905405 -116878067 + A-rich Low_complexity Low_complexity 2 75 0 283 235 102 20 chr11 31905692 31905790 -116877682 + L2 LINE L2 3198 3303 -10 288 211 0 14 chr11 31905925 31905996 -116877476 - LTR33 LTR ERVL -2 519 450 2000 172 0 0 chr11 31906240 31906543 -116876929 + AluSx SINE Alu 1 303 -9 324 120 0 0 chr11 31907954 31908004 -116875468 + (T)n Simple_repeat Simple_repeat 1 50 0 1228 310 52 14 chr11 31908131 31908648 -116874824 - L2 LINE L2 -260 3053 2519 326 171 57 14 chr11 31908958 31909028 -116874444 + AluJo SINE Alu 64 136 -166 552 266 39 29 chr11 31909048 31909255 -116874217 + L2 LINE L2 3067 3275 -38 472 214 121 29 chr11 31909401 31909607 -116873865 - L1MC5 LINE L1 -49 7912 7688 277 280 80 10 chr11 31909972 31910072 -116873400 - MLT1H LTR MaLR -205 344 238 576 39 26 0 chr11 31910565 31910643 -116872829 + MADE1 DNA Mariner 1 80 0 4840 156 34 17 chr11 31910959 31912241 -116871231 - L1PA16 LINE L1 -1 6165 4873 1125 251 40 3 chr11 31912247 31912625 -116870847 - L1 LINE L1 -2832 3314 2923 1455 235 37 16 chr11 31912630 31913059 -116870413 - L1PA13 LINE L1 -4610 2228 1791 487 292 21 17 chr11 31913272 31913511 -116869961 - L1PA13 LINE L1 -5276 1562 1348 1057 323 39 42 chr11 31913551 31914074 -116869398 - L1M2 LINE L1 -6214 624 62 22 0 0 0 chr11 31914151 31914173 -116869299 + AT_rich Low_complexity Low_complexity 1 22 0 1225 259 73 153 chr11 31914304 31915165 -116868307 + L2 LINE L2 1876 2649 -665 1309 228 92 69 chr11 31915165 31915673 -116867799 + MLT2B1 LTR ERVL 1 520 0 1225 259 73 153 chr11 31915673 31915801 -116867671 + L2 LINE L2 2649 2786 -528 459 0 0 0 chr11 31915811 31915846 -116867626 + (CA)n Simple_repeat Simple_repeat 1 86 0 459 0 0 0 chr11 31915846 31915897 -116867575 + (CA)n Simple_repeat Simple_repeat 2 52 0 431 280 92 46 chr11 31916280 31916673 -116866799 - L1MC4a LINE L1 -1869 5939 5529 22 70 0 0 chr11 31916739 31916782 -116866690 + AT_rich Low_complexity Low_complexity 1 43 0 1964 156 33 0 chr11 31916987 31917289 -116866183 - AluSx SINE Alu 0 312 1 372 331 105 34 chr11 31917379 31917732 -116865740 - L1MC4a LINE L1 -1099 5047 4670 206 271 42 0 chr11 31918658 31918706 -116864766 - MIR SINE MIR -11 251 202 227 363 12 0 chr11 31918740 31918820 -116864652 + L2 LINE L2 3183 3263 -9 346 336 46 0 chr11 31921043 31921174 -116862298 - L2 LINE L2 0 3272 3136 549 326 60 73 chr11 31921194 31921888 -116861584 - L2 LINE L2 -278 2994 2315 323 356 19 44 chr11 31921973 31922133 -116861339 - MIR SINE MIR -101 161 6 845 318 139 7 chr11 31922236 31922969 -116860503 - HAL1 LINE L1 -171 2336 1507 607 304 76 29 chr11 31923022 31923364 -116860108 - HAL1 LINE L1 -1556 951 594 473 287 127 19 chr11 31923575 31923882 -116859590 - HAL1 LINE L1 -2167 340 1 1749 131 0 4 chr11 31924004 31924256 -116859216 + AluSq SINE Alu 54 304 -9 293 331 84 11 chr11 31924268 31924427 -116859045 + MIR SINE MIR 28 199 -63 182 336 42 17 chr11 31924492 31924611 -116858861 - L3b LINE CR1 -351 1232 1111 850 313 89 38 chr11 31925221 31925960 -116857512 + L1MEc LINE L1 36 812 -5584 411 310 95 65 chr11 31926101 31926333 -116857139 + L1MEc LINE L1 1623 1861 -4535 42241 39 3 1 chr11 31926336 31932479 -116850993 + L1PA4 LINE L1 1 6152 -3 496 235 136 22 chr11 31932484 31932756 -116850716 + L1MEc LINE L1 1850 2152 -4244 940 267 38 14 chr11 31932785 31933156 -116850316 + L1MEc LINE L1 2968 3347 -2868 429 257 18 18 chr11 31933379 31933488 -116849984 + MIR SINE MIR 4 112 -150 354 240 198 0 chr11 31933483 31933579 -116849893 + L2 LINE L2 3188 3302 -11 * 218 335 65 25 chr11 31933584 31933726 -116849746 - MIR SINE MIR -62 146 1 553 248 111 43 chr11 31934530 31934764 -116848708 - L1MC5 LINE L1 -50 7911 7662 1366 210 83 4 chr11 31934919 31935328 -116848144 + L1ME1 LINE L1 5204 5645 -521 556 171 16 39 chr11 31935328 31935457 -116848015 - MLT1B LTR MaLR -256 134 9 3108 77 2 19 chr11 31935547 31935974 -116847498 - L1PA10 LINE L1 -6 6162 5743 1830 197 79 5 chr11 31936005 31936421 -116847051 + L1ME1 LINE L1 5672 6118 -48 295 254 0 16 chr11 31936422 31936485 -116846987 - L2 LINE L2 -59 3254 3193 1879 161 10 72 chr11 31936643 31937034 -116846438 - MLT1B LTR MaLR -17 373 7 1600 194 47 73 chr11 31937544 31938046 -116845426 - MER41B LTR ERV1 -10 597 99 247 274 24 48 chr11 31938578 31938702 -116844770 + LTR33A LTR ERVL 402 522 -1 341 271 42 0 chr11 31938750 31938846 -116844626 - MIR3 SINE MIR -11 197 98 249 57 0 0 chr11 31939630 31939665 -116843807 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 1539 244 3 26 chr11 31940821 31941171 -116842301 - MLT1I LTR MaLR 0 409 84 1286 208 13 20 chr11 31941329 31941632 -116841840 - L1MD2 LINE L1 -16 6343 6043 1799 189 106 5 chr11 31941638 31942211 -116841261 - L1MC4 LINE L1 -704 5655 5295 3911 26 0 0 chr11 31942218 31942678 -116840794 - L1PA2 LINE L1 -3 6152 5693 708 227 5 0 chr11 31942678 31942863 -116840609 + L1M4 LINE L1 5123 5308 -838 1734 127 8 4 chr11 31943057 31943310 -116840162 + AluSq SINE Alu 46 299 -14 15437 181 25 17 chr11 31943320 31947583 -116835889 + L1PA15 LINE L1 1864 6159 -6 21 0 0 0 chr11 31947735 31947756 -116835716 + AT_rich Low_complexity Low_complexity 1 21 0 365 268 137 55 chr11 31947891 31948220 -116835252 - L1MC4a LINE L1 -1926 5882 5527 240 336 75 0 chr11 31949017 31949124 -116834348 + L2 LINE L2 2131 2245 -1069 283 384 20 27 chr11 31949220 31949366 -116834106 + L2 LINE L2 3128 3272 0 252 340 103 26 chr11 31950760 31950916 -116832556 + MIR SINE MIR 94 261 -1 1561 212 11 45 chr11 31951202 31951580 -116831892 - MLT1A1 LTR MaLR 0 365 1 2292 71 0 17 chr11 31951907 31952204 -116831268 - AluY SINE Alu -19 292 1 1350 215 67 53 chr11 31952618 31953110 -116830362 + MER39 LTR ERV1 2 682 -25 862 191 106 0 chr11 31953195 31953384 -116830088 + MER3 DNA MER1_type 1 209 0 318 216 10 31 chr11 31953582 31953679 -116829793 + L1M4 LINE L1 2159 2253 -3893 623 290 74 57 chr11 31953683 31954265 -116829207 - L1MEd LINE L1 -4940 1179 588 443 312 30 39 chr11 31954402 31954633 -116828839 - L1MEd LINE L1 -5735 384 156 2079 152 36 3 chr11 31955429 31955765 -116827707 - MER7A DNA MER2_type 0 346 2 339 293 138 9 chr11 31955781 31955897 -116827575 + L2 LINE L2 3142 3272 0 3030 242 39 22 chr11 31956567 31957795 -116825677 - L1ME1 LINE L1 -8 6158 4909 934 178 32 24 chr11 31957795 31958103 -116825369 - MLT1A1 LTR MaLR 0 365 10 373 326 20 20 chr11 31958179 31958326 -116825146 + MIR SINE MIR 102 248 -14 430 348 31 19 chr11 31958420 31958581 -116824891 - L2 LINE L2 0 3272 3110 360 330 186 19 chr11 31958722 31958993 -116824479 + L2 LINE L2 2685 2998 -274 195 280 27 13 chr11 31959558 31959633 -116823839 + L2 LINE L2 3014 3089 -183 21 0 0 0 chr11 31960041 31960062 -116823410 + AT_rich Low_complexity Low_complexity 1 21 0 194 351 0 52 chr11 31960727 31960804 -116822668 + MIR SINE MIR 20 92 -170 26 0 0 0 chr11 31960944 31960970 -116822502 + AT_rich Low_complexity Low_complexity 1 26 0 664 181 50 143 chr11 31961561 31961820 -116821652 - MIR SINE MIR 0 262 28 1963 247 65 49 chr11 31961880 31962577 -116820895 + L1ME3A LINE L1 5451 6158 -12 181 405 0 0 chr11 31962979 31963053 -116820419 - L2 LINE L2 -51 3221 3148 * 304 291 64 73 chr11 31963048 31963268 -116820204 + L2 LINE L2 1043 1260 -2054 916 163 4 145 chr11 31963288 31963564 -116819908 + Charlie4a DNA MER1_type 74 310 -198 1046 260 4 32 chr11 31963596 31963873 -116819599 + MLT1G LTR MaLR 30 298 -292 1176 280 17 47 chr11 31963948 31964419 -116819053 - L1MEc LINE L1 -5826 570 114 415 117 67 13 chr11 31964500 31964744 -116818728 + (TA)n Simple_repeat Simple_repeat 1 257 0 353 226 0 0 chr11 31964748 31964822 -116818650 - FLAM_A SINE Alu -66 67 4 1417 211 22 0 chr11 31965225 31965542 -116817930 + MER33 DNA MER1_type 1 324 0 204 301 21 0 chr11 31965572 31965665 -116817807 + L2 LINE L2 1991 2085 -1229 359 306 8 16 chr11 31965677 31965798 -116817674 - MER5A DNA MER1_type -2 187 68 315 298 124 70 chr11 31965836 31966192 -116817280 + L2 LINE L2 2138 2512 -802 768 197 53 43 chr11 31966248 31966436 -116817036 - MER20 DNA MER1_type -1 218 29 247 347 133 0 chr11 31967624 31967722 -116815750 + L2 LINE L2 3142 3252 -20 313 208 144 40 chr11 31969310 31969435 -116814037 + MIR SINE MIR 91 228 -34 25 0 0 0 chr11 31969698 31969723 -116813749 + AT_rich Low_complexity Low_complexity 1 25 0 1435 176 229 36 chr11 31970532 31971024 -116812448 - MER92B LTR ERV1 0 636 1 1218 185 56 56 chr11 31971242 31971566 -116811906 - LTR37A LTR ERV1 -99 327 4 24 0 0 0 chr11 31971704 31971728 -116811744 + AT_rich Low_complexity Low_complexity 1 24 0 336 316 196 0 chr11 31971751 31971884 -116811588 - MER5A DNA MER1_type -10 179 21 383 160 53 13 chr11 31972499 31972574 -116810898 - MER53 DNA DNA -111 78 1 332 185 0 0 chr11 31972670 31972724 -116810748 + FRAM/FAM SINE Alu 29 82 -93 2290 56 0 62 chr11 31973207 31973513 -116809959 + AluY SINE Alu 1 287 -24 1799 146 48 10 chr11 31973670 31973964 -116809508 - AluSx SINE Alu -7 305 1 472 266 122 61 chr11 31974763 31975090 -116808382 - L1ME3 LINE L1 -277 5885 5539 399 304 101 35 chr11 31975373 31975630 -116807842 - L1ME3 LINE L1 -942 5204 4931 341 254 152 50 chr11 31975705 31976047 -116807425 - L1ME3 LINE L1 -1341 4805 4429 8810 128 67 11 chr11 31978827 31979739 -116803733 + Tigger1 DNA MER2_type 1 861 -1557 2142 123 3 0 chr11 31979739 31980047 -116803425 - AluY SINE Alu -2 309 1 8810 128 67 11 chr11 31980047 31981310 -116802162 + Tigger1 DNA MER2_type 861 2365 -53 198 0 0 0 chr11 31981310 31981332 -116802140 + (TG)n Simple_repeat Simple_repeat 1 22 0 8810 128 67 11 chr11 31981332 31981390 -116802082 + Tigger1 DNA MER2_type 2365 2418 0 3708 171 74 53 chr11 31982559 31983555 -116799917 + Tigger6a DNA MER2_type 2 1014 -69 512 158 165 0 chr11 31983815 31983948 -116799524 + MER106B DNA MER1_type 905 1059 0 1743 121 8 12 chr11 31984053 31984310 -116799162 - AluSc SINE Alu -10 299 44 21 0 0 0 chr11 31985644 31985665 -116797807 + AT_rich Low_complexity Low_complexity 1 21 0 2221 112 3 3 chr11 31986830 31987135 -116796337 + AluSg SINE Alu 1 305 -5 603 92 0 0 chr11 31987919 31988006 -116795466 + (TGGA)n Simple_repeat Simple_repeat 3 89 0 286 130 0 0 chr11 31988036 31988082 -116795390 + MLT2C1 LTR ERVL 352 397 0 959 321 82 21 chr11 31988331 31988817 -116794655 + MLT1K LTR MaLR 14 529 -59 2569 55 10 0 chr11 31988952 31989260 -116794212 - AluY SINE Alu 0 311 1 420 83 0 0 chr11 31989517 31989577 -116793895 + MLT1A1 LTR MaLR 260 319 -46 530 287 41 26 chr11 31990291 31990312 -116793160 - MIR SINE MIR -42 220 201 1956 181 14 8 chr11 31990312 31990671 -116792801 - MLT1A1 LTR MaLR -4 361 1 530 287 41 26 chr11 31990671 31990844 -116792628 - MIR SINE MIR -61 201 23 872 123 6 49 chr11 31991199 31991361 -116792111 + L1P4 LINE L1 5664 5818 -347 2204 137 26 13 chr11 31991379 31991787 -116791685 + L1PA15 LINE L1 5779 6191 0 538 315 79 9 chr11 31992135 31992325 -116791147 + MIR SINE MIR 20 228 -34 2272 97 13 0 chr11 31992325 31992623 -116790849 + AluSx SINE Alu 1 302 -10 538 315 79 9 chr11 31992623 31992648 -116790824 + MIR SINE MIR 228 250 -12 607 180 66 49 chr11 31992673 31992856 -116790616 - MER53 DNA DNA 0 189 4 247 286 16 0 chr11 31993064 31993127 -116790345 + L2 LINE L2 3245 3308 -5 1221 62 0 0 chr11 31993266 31993410 -116790062 - AluSq SINE Alu -10 303 160 921 71 0 0 chr11 31993410 31993523 -116789949 - AluSq SINE Alu -189 123 11 330 293 62 78 chr11 31994096 31994352 -116789120 + L1ME4a LINE L1 5680 5931 -190 264 146 61 24 chr11 31994416 31994498 -116788974 + L1ME4a LINE L1 6033 6117 -4 488 287 21 48 chr11 31994599 31994787 -116788685 + MIR SINE MIR 80 262 0 269 213 16 0 chr11 31994843 31994904 -116788568 + CT-rich Low_complexity Low_complexity 3 64 0 466 216 72 0 chr11 31995939 31996050 -116787422 + L2 LINE L2 3195 3313 0 492 266 43 30 chr11 31996865 31997038 -116786434 + MIR SINE MIR 8 184 -59 550 202 250 12 chr11 31997304 31997472 -116786000 + MIR SINE MIR 4 211 -51 215 210 86 123 chr11 31998466 31998547 -116784925 - MER91A DNA MER1_type -115 81 4 232 205 26 64 chr11 31998973 31999051 -116784421 + MLT1K LTR MaLR 514 588 0 338 290 30 38 chr11 31999287 31999418 -116784054 - MIR SINE MIR -59 149 20 354 283 0 0 chr11 31999611 31999703 -116783769 - MER96 DNA MER1_type? 0 175 84 418 271 41 16 chr11 32000241 32000363 -116783109 - MIR SINE MIR -68 140 16 332 301 76 14 chr11 32000455 32000599 -116782873 - MIR SINE MIR -46 216 65 1675 250 34 44 chr11 32000701 32001271 -116782201 - MLT1F1 LTR MaLR -4 563 1 272 67 67 17 chr11 32002793 32002853 -116780619 + CT-rich Low_complexity Low_complexity 4 66 0 417 241 149 62 chr11 32002887 32003082 -116780390 + L2 LINE L2 3102 3313 0 367 315 54 38 chr11 32003190 32003374 -116780098 - MIR SINE MIR -48 214 28 1030 255 170 21 chr11 32006740 32007231 -116776241 + L2 LINE L2 2743 3313 0 488 268 72 17 chr11 32007335 32007539 -116775933 - MIR SINE MIR -2 260 47 1134 169 29 5 chr11 32007562 32007769 -116775703 + MER20 DNA MER1_type 8 219 0 990 286 70 5 chr11 32007819 32008263 -116775209 + L1ME4a LINE L1 5532 6004 -117 22 35 0 0 chr11 32008324 32008353 -116775119 + AT_rich Low_complexity Low_complexity 1 29 0 358 156 0 5 chr11 32008459 32008524 -116774948 + FRAM SINE Alu 73 127 -39 184 264 66 33 chr11 32009068 32009159 -116774313 + MIR SINE MIR 28 121 -141 437 311 31 6 chr11 32010964 32011125 -116772347 + L2 LINE L2 2785 2949 -365 * 564 333 125 11 chr11 32011119 32011470 -116772002 - L2 LINE L2 -39 3274 2884 258 259 48 116 chr11 32011645 32011792 -116771680 - MIR3 SINE MIR -69 139 3 414 260 31 72 chr11 32012576 32012799 -116770673 + L1ME LINE L1 5523 5736 -385 337 260 73 27 chr11 32012892 32013042 -116770430 - MER103 DNA DNA -7 159 3 261 176 118 50 chr11 32013781 32013900 -116769572 + L1ME LINE L1 5768 5894 -227 1712 211 163 22 chr11 32014089 32014234 -116769238 - L1MD3 LINE L1 -8 7987 7864 2331 114 19 27 chr11 32014234 32014610 -116768862 + THE1C LTR MaLR 3 375 0 1712 211 163 22 chr11 32014610 32015573 -116767899 - L1MD3 LINE L1 -131 7864 6643 214 209 58 12 chr11 32015579 32015665 -116767807 + (TCTA)n Simple_repeat Simple_repeat 3 92 0 434 131 48 0 chr11 32015758 32015903 -116767569 + (TA)n Simple_repeat Simple_repeat 1 152 0 25 0 0 0 chr11 32015928 32015953 -116767519 + AT_rich Low_complexity Low_complexity 1 25 0 1481 238 151 2 chr11 32015962 32016378 -116767094 - MLT2B1 LTR ERVL -40 480 3 597 62 10 21 chr11 32016379 32016476 -116766996 + (TCTA)n Simple_repeat Simple_repeat 1 96 0 3978 228 43 41 chr11 32016477 32017805 -116765667 - L1MC4a LINE L1 -1216 6592 5262 492 225 64 77 chr11 32018064 32018265 -116765207 + MIR SINE MIR 6 202 -53 21 0 0 0 chr11 32019050 32019071 -116764401 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr11 32019277 32019298 -116764174 + (TTA)n Simple_repeat Simple_repeat 2 22 0 1571 167 4 11 chr11 32019298 32019567 -116763905 - AluJo SINE Alu -32 280 14 288 299 37 9 chr11 32019585 32019692 -116763780 + MER20B DNA MER1_type 2 111 -672 2468 203 57 69 chr11 32019711 32020446 -116763026 + MER21B LTR ERV1 13 738 -125 1063 207 66 41 chr11 32020494 32021068 -116762404 + MER20B DNA MER1_type 135 783 0 514 259 63 0 chr11 32021087 32021230 -116762242 - MIR SINE MIR -83 179 28 2109 244 30 20 chr11 32022102 32022664 -116760808 + MER69 DNA AcHobo 1 568 -1958 1691 178 99 6 chr11 32022662 32023135 -116760337 + MER69 DNA AcHobo 2010 2526 0 * 564 321 72 8 chr11 32023151 32023388 -116760084 + L3 LINE CR1 1243 1494 -83 21 0 0 0 chr11 32024704 32024725 -116758747 + AT_rich Low_complexity Low_complexity 1 21 0 344 255 49 0 chr11 32025860 32025962 -116757510 - MIR SINE MIR 0 262 156 734 243 56 19 chr11 32026683 32026897 -116756575 - MIR SINE MIR -17 245 24 24 54 0 18 chr11 32027460 32027485 -116755987 + AT_rich Low_complexity Low_complexity 1 25 -30 1613 184 0 46 chr11 32027485 32027790 -116755682 - AluJo SINE Alu -21 291 1 24 54 0 18 chr11 32027790 32027820 -116755652 + AT_rich Low_complexity Low_complexity 25 55 0 186 43 0 0 chr11 32027990 32028013 -116755459 + (CATTT)n Simple_repeat Simple_repeat 3 25 0 24 53 0 0 chr11 32028324 32028362 -116755110 + AT_rich Low_complexity Low_complexity 1 38 0 266 29 0 0 chr11 32028484 32028518 -116754954 - MADE1 DNA Mariner -41 39 6 271 224 149 45 chr11 32028729 32028863 -116754609 + L2 LINE L2 3165 3312 -1 222 265 0 41 chr11 32029176 32029225 -116754247 - L2 LINE L2 -9 3263 3217 2196 68 61 7 chr11 32029540 32029833 -116753639 - AluSc SINE Alu 0 309 1 376 347 28 2 chr11 32029854 32030008 -116753464 - MIR3 SINE MIR -77 131 9 547 318 115 41 chr11 32030564 32031114 -116752358 + L2 LINE L2 2668 3242 -71 312 148 16 0 chr11 32031118 32031179 -116752293 - MSTB1 LTR MaLR -4 428 367 1842 215 27 0 chr11 32031179 32031555 -116751917 + MST-int LTR MaLR 478 863 -788 542 149 45 4 chr11 32031555 32031673 -116751799 + MSTB LTR MaLR 234 426 0 303 270 0 0 chr11 32031675 32031749 -116751723 + L2 LINE L2 3199 3272 0 217 225 0 0 chr11 32031908 32031948 -116751524 + (TAG)n Simple_repeat Simple_repeat 1 40 0 259 313 266 21 chr11 32031948 32032140 -116751332 - MIR SINE MIR 0 262 24 282 56 0 0 chr11 32034043 32034079 -116749393 + (GA)n Simple_repeat Simple_repeat 1 36 0 494 237 157 21 chr11 32035699 32035946 -116747526 - MLT1H LTR MaLR 0 555 249 521 213 67 33 chr11 32036018 32036168 -116747304 - MLT1H LTR MaLR -394 155 1 412 243 111 71 chr11 32036548 32036774 -116746698 + MIR SINE MIR 28 262 0 684 222 113 52 chr11 32036953 32037165 -116746307 + MIR SINE MIR 20 244 -18 339 253 253 6 chr11 32038588 32038758 -116744714 + L2 LINE L2 3100 3311 -2 3715 225 87 7 chr11 32038888 32040224 -116743248 - L1ME1 LINE L1 -26 6140 4702 441 300 76 51 chr11 32040297 32040534 -116742938 - MIR SINE MIR -14 248 6 22 0 0 0 chr11 32041791 32041813 -116741659 + AT_rich Low_complexity Low_complexity 1 22 0 467 194 129 81 chr11 32041971 32042157 -116741315 - HAL1b LINE L1 -443 905 711 321 299 52 58 chr11 32042341 32042515 -116740957 - HAL1 LINE L1 -738 1769 1597 588 275 22 34 chr11 32042688 32042866 -116740606 - MIR SINE MIR -24 238 63 1305 192 45 34 chr11 32045163 32045454 -116738018 - AluJo SINE Alu -18 294 1 1862 157 0 26 chr11 32045841 32046147 -116737325 - AluJb SINE Alu -14 298 1 2299 67 0 63 chr11 32046759 32047075 -116736397 - AluY SINE Alu -15 296 1 2490 59 0 7 chr11 32048042 32048349 -116735123 + AluY SINE Alu 1 305 -6 254 159 91 0 chr11 32049864 32049908 -116733564 + L2 LINE L2 3215 3262 -10 262 312 60 9 chr11 32050913 32051046 -116732426 - MIR SINE MIR -64 198 61 183 100 0 0 chr11 32051727 32051757 -116731715 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1708 154 4 0 chr11 32052668 32052947 -116730525 + AluSx SINE Alu 1 280 -32 345 47 0 0 chr11 32052947 32052990 -116730482 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 22 0 0 0 chr11 32052990 32053012 -116730460 + AT_rich Low_complexity Low_complexity 1 22 0 184 309 194 14 chr11 32053064 32053281 -116730191 - MIR SINE MIR -5 257 2 2086 101 3 11 chr11 32053399 32053685 -116729787 - AluSc SINE Alu -22 287 4 283 258 182 67 chr11 32053737 32053946 -116729526 + MIR SINE MIR 13 245 -17 21 0 0 0 chr11 32056377 32056398 -116727074 + AT_rich Low_complexity Low_complexity 1 21 0 312 140 0 0 chr11 32061671 32061721 -116721751 + L1MB1 LINE L1 6102 6151 -17 971 203 123 5 chr11 32064199 32064411 -116719061 - MIR SINE MIR -15 247 11 810 301 62 39 chr11 32064579 32065084 -116718388 + MLT1K LTR MaLR 2 588 0 1858 205 58 52 chr11 32065099 32065601 -116717871 + MLT1D LTR MaLR 1 505 0 580 292 34 42 chr11 32066565 32066801 -116716671 - MIR SINE MIR -21 241 8 205 351 0 0 chr11 32066858 32066915 -116716557 + MER91 DNA MER1_type 2 58 -82 272 322 38 71 chr11 32067071 32067254 -116716218 + MIR3 SINE MIR 5 181 -27 282 294 0 15 chr11 32068661 32068729 -116714743 + MIR SINE MIR 16 82 -180 230 267 17 0 chr11 32068837 32068897 -116714575 + (CATATA)n Simple_repeat Simple_repeat 2 62 0 192 158 0 0 chr11 32069110 32069148 -116714324 + (CTCG)n Simple_repeat Simple_repeat 2 39 0 1803 147 42 114 chr11 32071033 32071113 -116712359 - L1MB4 LINE L1 -1 6179 6095 361 65 0 0 chr11 32071113 32071159 -116712313 + MADE1 DNA Mariner 1 46 -34 1803 147 42 114 chr11 32071159 32071482 -116711990 - L1MB4 LINE L1 -85 6095 5763 236 344 54 0 chr11 32071488 32071581 -116711891 - L2 LINE L2 -21 3251 3154 240 282 0 42 chr11 32071633 32071704 -116711768 - L2 LINE L2 0 3272 3205 199 189 0 0 chr11 32072618 32072655 -116710817 + L2 LINE L2 3187 3223 -49 237 253 152 67 chr11 32072679 32072948 -116710524 + L1ME4a LINE L1 5812 6103 -18 218 222 14 111 chr11 32073232 32073304 -116710168 - L2 LINE L2 0 3313 3249 841 153 8 0 chr11 32073471 32073595 -116709877 + FRAM SINE Alu 1 125 -51 644 242 101 22 chr11 32073694 32073921 -116709551 + MIR SINE MIR 17 261 -1 355 328 38 30 chr11 32074130 32074261 -116709211 + MIR3 SINE MIR 15 146 -62 212 175 53 35 chr11 32074674 32074731 -116708741 - L2 LINE L2 -10 3262 3205 279 318 163 31 chr11 32075029 32075158 -116708314 + L2 LINE L2 3122 3267 -5 1284 197 65 16 chr11 32075308 32075617 -116707855 + MER33 DNA MER1_type 1 324 0 483 256 62 62 chr11 32075617 32075922 -116707550 + L1ME4a LINE L1 5590 5894 -227 858 254 41 12 chr11 32076379 32076623 -116706849 + MIR SINE MIR 12 262 0 213 70 47 47 chr11 32076780 32076823 -116706649 + T-rich Low_complexity Low_complexity 4 46 0 2022 137 20 0 chr11 32076971 32077263 -116706209 + AluSx SINE Alu 1 298 -14 472 257 59 26 chr11 32078259 32078411 -116705061 - MER103 DNA DNA -1 165 9 467 263 171 0 chr11 32078453 32078605 -116704867 - MIR SINE MIR -1 261 84 2481 160 131 7 chr11 32078875 32079324 -116704148 - MLT1D LTR MaLR 0 505 1 303 293 47 0 chr11 32079712 32079818 -116703654 + MIR SINE MIR 140 250 -12 297 288 98 82 chr11 32079874 32080058 -116703414 - MIR SINE MIR -48 214 28 263 267 0 17 chr11 32080883 32080943 -116702529 - MIR SINE MIR -184 78 20 185 313 174 9 chr11 32080989 32081104 -116702368 + MIR SINE MIR 2 135 -127 216 0 0 0 chr11 32081129 32081153 -116702319 + (T)n Simple_repeat Simple_repeat 1 24 0 298 231 183 10 chr11 32081246 32081350 -116702122 + L2 LINE L2 3191 3312 -1 487 218 286 0 chr11 32081380 32081527 -116701945 - MER5A DNA MER1_type 0 189 1 382 243 312 5 chr11 32081534 32081723 -116701749 + MIR SINE MIR 16 262 0 861 251 65 9 chr11 32082979 32083194 -116700278 + MIR SINE MIR 15 241 -21 213 248 64 16 chr11 32083199 32083305 -116700167 - L2 LINE L2 -1 3312 3133 206 321 84 63 chr11 32083382 32083572 -116699900 - MIR SINE MIR -49 213 20 217 384 50 10 chr11 32083650 32083749 -116699723 + MIR SINE MIR 30 132 -76 239 356 130 27 chr11 32083913 32084059 -116699413 + L2 LINE L2 3103 3263 -9 353 197 0 0 chr11 32084916 32084977 -116698495 + MIR SINE MIR 70 130 -132 1042 212 17 68 chr11 32085057 32085126 -116698346 + MER58A DNA MER1_type 1 72 -2348 2377 87 0 0 chr11 32085126 32085424 -116698048 + AluSx SINE Alu 1 298 -14 1042 212 17 68 chr11 32085424 32085590 -116697882 + MER58A DNA MER1_type 72 224 0 307 314 43 29 chr11 32085653 32085793 -116697679 - MIR3 SINE MIR -65 143 2 446 178 109 0 chr11 32086009 32086110 -116697362 + MER103 DNA DNA 8 119 -47 24 32 0 0 chr11 32086268 32086299 -116697173 + AT_rich Low_complexity Low_complexity 1 31 0 433 328 96 35 chr11 32086897 32087095 -116696377 + L2 LINE L2 3053 3262 -10 1341 188 83 14 chr11 32087806 32088082 -116695390 + AluJo SINE Alu 1 295 -17 25 0 0 0 chr11 32088254 32088279 -116695193 + AT_rich Low_complexity Low_complexity 1 25 0 378 301 146 36 chr11 32088307 32088526 -116694946 - MIR SINE MIR 0 262 20 21 0 0 0 chr11 32089527 32089548 -116693924 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 32089719 32089740 -116693732 + AT_rich Low_complexity Low_complexity 1 21 0 327 300 200 7 chr11 32090306 32090456 -116693016 - MIR3 SINE MIR -15 193 15 221 286 62 54 chr11 32090464 32090521 -116692951 + MIR SINE MIR 31 86 -122 2987 136 36 0 chr11 32090521 32091022 -116692450 - L1MB3 LINE L1 0 6183 5665 221 286 62 54 chr11 32091022 32091076 -116692396 + MIR SINE MIR 86 143 -65 210 278 111 0 chr11 32092861 32092951 -116690521 - L2 LINE L2 -5 3267 3168 200 313 33 27 chr11 32093416 32093566 -116689906 - MER5A DNA MER1_type -4 185 35 553 252 67 96 chr11 32093718 32093761 -116689711 + L2 LINE L2 3036 3079 -234 2012 66 89 0 chr11 32093761 32094032 -116689440 - AluSp SINE Alu -18 295 1 553 252 67 96 chr11 32094032 32094258 -116689214 + L2 LINE L2 3079 3297 -16 189 0 0 0 chr11 32094262 32094283 -116689189 + (TGAA)n Simple_repeat Simple_repeat 2 22 0 962 223 28 114 chr11 32094354 32094443 -116689029 + MER34 LTR ERV1 1 96 -446 1585 171 44 24 chr11 32094443 32094736 -116688736 + AluJb SINE Alu 1 299 -13 962 223 28 114 chr11 32094736 32095216 -116688256 + MER34 LTR ERV1 96 521 -21 332 258 54 0 chr11 32095276 32095369 -116688103 - L2 LINE L2 -15 3298 3201 416 339 31 26 chr11 32095481 32095673 -116687799 - MIR SINE MIR -51 211 19 342 291 50 50 chr11 32095838 32096020 -116687452 - MIR SINE MIR -51 211 30 530 243 0 74 chr11 32096110 32096299 -116687173 + MIR3 SINE MIR 22 196 -12 216 226 226 0 chr11 32096935 32096997 -116686475 + MIR SINE MIR 36 111 -97 237 323 108 32 chr11 32097172 32097358 -116686114 + L2 LINE L2 2702 2901 -413 311 282 24 0 chr11 32097591 32097676 -116685796 + MER5A DNA MER1_type 35 121 -68 25 0 0 0 chr11 32099553 32099578 -116683894 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr11 32100566 32100587 -116682885 + AT_rich Low_complexity Low_complexity 1 21 0 310 273 65 43 chr11 32101245 32101384 -116682088 + L3 LINE CR1 1177 1318 -259 279 54 0 0 chr11 32101619 32101656 -116681816 + (TG)n Simple_repeat Simple_repeat 2 38 0 248 289 121 0 chr11 32101660 32101743 -116681729 + L3 LINE CR1 1483 1575 -2 365 311 33 22 chr11 32102670 32102820 -116680652 - MIR SINE MIR -43 165 20 212 279 0 81 chr11 32103170 32103256 -116680216 + MIR3 SINE MIR 107 185 -23 368 302 94 13 chr11 32103732 32103891 -116679581 - MER5A DNA MER1_type 0 189 18 2556 0 0 7 chr11 32103993 32104273 -116679199 - AluYa5 SINE Alu -1 310 33 1764 152 7 17 chr11 32105416 32105712 -116677760 + AluJo SINE Alu 1 293 -19 40 21 0 0 chr11 32105715 32105762 -116677710 + AT_rich Low_complexity Low_complexity 1 47 0 3634 146 27 6 chr11 32105845 32106481 -116676991 + L1MB3 LINE L1 5534 6182 -1 22 35 0 0 chr11 32107612 32107641 -116675831 + AT_rich Low_complexity Low_complexity 1 29 0 270 305 40 49 chr11 32108504 32108904 -116674568 + MLT1K LTR MaLR 149 586 -2 22 0 0 0 chr11 32108923 32108945 -116674527 + AT_rich Low_complexity Low_complexity 1 22 0 303 28 0 0 chr11 32109347 32109383 -116674089 + (CA)n Simple_repeat Simple_repeat 2 37 0 27 29 0 0 chr11 32109819 32109853 -116673619 + AT_rich Low_complexity Low_complexity 1 34 0 298 325 204 6 chr11 32110025 32110182 -116673290 + MIR SINE MIR 57 244 -18 1728 176 0 26 chr11 32110360 32110673 -116672799 - AluJb SINE Alu -7 305 1 886 153 15 2 chr11 32110795 32110997 -116672475 - MER8 DNA MER2_type 0 239 1 204 348 62 0 chr11 32111074 32111186 -116672286 + L2 LINE L2 3106 3224 -89 443 211 8 23 chr11 32113123 32113256 -116670216 + MER113 DNA MER1_type? 1 131 -390 270 0 0 0 chr11 32113305 32113335 -116670137 + (CA)n Simple_repeat Simple_repeat 2 31 0 204 40 0 0 chr11 32113334 32113359 -116670113 + (TC)n Simple_repeat Simple_repeat 1 25 0 * 249 321 27 9 chr11 32113585 32113697 -116669775 + GA-rich Low_complexity Low_complexity 6 119 0 498 268 12 61 chr11 32114407 32114571 -116668901 - MIR SINE MIR 0 262 107 197 207 61 49 chr11 32114713 32114795 -116668677 + MIR SINE MIR 179 261 -1 274 159 0 0 chr11 32114795 32114839 -116668633 + (CAT)n Simple_repeat Simple_repeat 1 44 0 814 211 19 93 chr11 32115429 32115699 -116667773 + L1MB8 LINE L1 5920 6169 -9 185 264 0 19 chr11 32116261 32116314 -116667158 - L3 LINE CR1 -676 901 850 * 254 333 121 11 chr11 32116291 32116564 -116666908 + L2 LINE L2 2594 2896 -418 424 311 54 76 chr11 32116572 32116849 -116666623 + L2 LINE L2 3001 3271 -1 1387 233 11 0 chr11 32117157 32117458 -116666014 + AluJo SINE Alu 1 304 0 2281 145 75 0 chr11 32117578 32117992 -116665480 + L1MB3 LINE L1 5737 6181 -2 486 245 31 13 chr11 32117997 32118156 -116665316 - MER112 DNA MER1_type -98 162 1 288 292 11 0 chr11 32118156 32118245 -116665227 - L1ME LINE L1 -289 5832 5743 1623 238 42 65 chr11 32118604 32119201 -116664271 + MLT1E LTR MaLR 11 593 0 754 300 56 25 chr11 32119447 32119952 -116663520 + MLT1K LTR MaLR 4 586 -2 3924 241 67 32 chr11 32120354 32122872 -116660600 - L1ME1 LINE L1 -4 6096 3488 793 282 112 39 chr11 32122890 32123347 -116660125 - L1ME1 LINE L1 -5575 495 6 234 315 27 18 chr11 32125919 32126030 -116657442 - MIR SINE MIR -40 222 111 265 253 77 44 chr11 32127159 32127341 -116656131 - L1ME4a LINE L1 -1 6120 5933 27 0 0 0 chr11 32128444 32128471 -116655001 + AT_rich Low_complexity Low_complexity 1 27 0 526 303 108 26 chr11 32130195 32130426 -116653046 + MIR SINE MIR 13 262 0 187 177 63 114 chr11 32130414 32130493 -116652979 - MIR SINE MIR -100 162 88 * 369 252 70 26 chr11 32132076 32132191 -116651281 - L2 LINE L2 0 3272 3153 1699 160 25 0 chr11 32132570 32132845 -116650627 - AluJb SINE Alu -30 282 1 293 212 77 49 chr11 32133108 32133223 -116650249 + MIR SINE MIR 42 153 -92 205 229 0 71 chr11 32133273 32133343 -116650129 + MIR SINE MIR 147 211 -51 231 204 0 0 chr11 32134087 32134136 -116649336 + T-rich Low_complexity Low_complexity 1 49 0 255 312 35 29 chr11 32136421 32136523 -116646949 - MIR SINE MIR -95 113 22 622 255 75 0 chr11 32136582 32136770 -116646702 - MIR SINE MIR 0 262 61 813 273 32 19 chr11 32137871 32138087 -116645385 + MIR SINE MIR 30 248 -14 2121 31 47 0 chr11 32138204 32138462 -116645010 + AluY SINE Alu 34 303 -8 377 286 9 27 chr11 32138703 32138815 -116644657 - MIR3 SINE MIR -45 163 54 396 345 18 12 chr11 32138873 32139038 -116644434 - MIR SINE MIR -66 196 31 394 339 44 28 chr11 32139093 32139273 -116644199 + MER5A DNA MER1_type 6 188 -1 1312 164 47 106 chr11 32139451 32139525 -116643947 - MER2 DNA MER2_type 0 345 268 2358 112 0 0 chr11 32139525 32139837 -116643635 + AluSx SINE Alu 1 312 0 1312 164 47 106 chr11 32139837 32140122 -116643350 - MER2 DNA MER2_type -77 268 7 228 67 0 0 chr11 32142766 32142796 -116640676 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 1725 121 143 0 chr11 32143374 32143639 -116639833 + AluSq SINE Alu 1 303 -10 226 267 33 0 chr11 32143664 32143724 -116639748 - MER113 DNA MER1_type? -6 515 454 192 258 97 65 chr11 32143987 32144080 -116639392 + L2 LINE L2 3193 3288 -25 1344 173 17 0 chr11 32144337 32144568 -116638904 - MER46A DNA MER2_type -1 235 1 465 257 143 11 chr11 32145584 32145759 -116637713 + MIR SINE MIR 65 262 0 231 382 20 0 chr11 32145810 32145912 -116637560 + L2 LINE L2 3168 3271 -1 259 356 34 7 chr11 32146092 32146238 -116637234 + MIR SINE MIR 109 258 -4 323 238 105 19 chr11 32147180 32147285 -116636187 - MIR SINE MIR -65 143 30 2745 97 11 3 chr11 32148080 32148452 -116635020 + THE1C LTR MaLR 1 375 0 24 32 0 0 chr11 32149245 32149276 -116634196 + AT_rich Low_complexity Low_complexity 1 31 0 283 247 108 21 chr11 32149553 32149646 -116633826 + L2 LINE L2 3197 3297 -16 240 308 11 33 chr11 32150858 32150949 -116632523 + MIR3 SINE MIR 9 97 -111 2024 119 0 20 chr11 32151093 32151415 -116632057 - AluSx SINE Alu 0 316 1 262 59 0 0 chr11 32153521 32153555 -116629917 + MLT1B LTR MaLR 3 36 -354 497 136 11 0 chr11 32153571 32153659 -116629813 + MLT1B LTR MaLR 301 389 -1 189 364 40 20 chr11 32153942 32154041 -116629431 + L2 LINE L2 3137 3237 -35 249 159 0 0 chr11 32154322 32154366 -116629106 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 304 313 147 18 chr11 32154829 32154992 -116628480 - MIR3 SINE MIR -15 193 10 21 0 0 0 chr11 32155780 32155801 -116627671 + AT_rich Low_complexity Low_complexity 1 21 0 506 306 64 30 chr11 32156296 32156561 -116626911 - L2 LINE L2 -9 3304 3031 1885 143 7 36 chr11 32157790 32158098 -116625374 + AluSx SINE Alu 1 299 -13 236 310 0 0 chr11 32158826 32158897 -116624575 + A-rich Low_complexity Low_complexity 2 72 0 451 267 81 62 chr11 32159103 32159361 -116624111 + MLT1L LTR MaLR 5 267 -348 365 245 119 26 chr11 32159507 32159658 -116623814 + MLT1L LTR MaLR 446 610 -5 356 291 53 46 chr11 32159839 32159891 -116623581 - MIR SINE MIR -6 256 206 1801 170 24 0 chr11 32159891 32160185 -116623287 + AluSx SINE Alu 1 301 -11 356 291 53 46 chr11 32160185 32160283 -116623189 - MIR SINE MIR -56 206 105 311 354 0 10 chr11 32160415 32160549 -116622923 - MER5A DNA MER1_type -38 151 8 574 259 47 26 chr11 32161081 32161274 -116622198 - MER117 DNA MER1_type 0 197 1 1617 192 45 3 chr11 32164070 32164362 -116619110 + AluJb SINE Alu 1 304 -8 210 246 0 0 chr11 32164404 32164465 -116619007 + (TA)n Simple_repeat Simple_repeat 1 61 0 248 234 0 0 chr11 32164514 32164561 -116618911 + (TAG)n Simple_repeat Simple_repeat 1 47 0 271 312 0 0 chr11 32164806 32164883 -116618589 + (CTA)n Simple_repeat Simple_repeat 1 77 0 216 241 17 52 chr11 32165887 32165945 -116617527 + MER91A DNA MER1_type 18 73 -123 223 286 0 0 chr11 32166113 32166162 -116617310 + (TGG)n Simple_repeat Simple_repeat 3 51 0 202 307 86 49 chr11 32166901 32167064 -116616408 + MIR SINE MIR 67 235 -27 1318 197 70 27 chr11 32167197 32167455 -116616017 + L1MC4 LINE L1 7636 7859 -136 339 25 0 0 chr11 32167455 32167495 -116615977 + (CA)n Simple_repeat Simple_repeat 2 41 0 1318 197 70 27 chr11 32167495 32167627 -116615845 + L1MC4 LINE L1 7859 7984 -11 1301 71 0 0 chr11 32168693 32168848 -116614624 - AluSp SINE Alu -7 306 152 188 143 18 125 chr11 32168912 32168968 -116614504 - L2 LINE L2 -264 3049 3000 2320 102 3 10 chr11 32169040 32169353 -116614119 + AluSq SINE Alu 1 311 -2 180 240 31 83 chr11 32169397 32169493 -116613979 - L2 LINE L2 -444 2870 2780 400 203 130 16 chr11 32169577 32169700 -116613772 + MIR SINE MIR 126 262 0 329 300 10 10 chr11 32170135 32170235 -116613237 + MIR SINE MIR 57 156 -106 588 118 0 0 chr11 32171704 32171789 -116611683 + AluSg/x SINE Alu 209 293 -16 2351 44 0 83 chr11 32171962 32172301 -116611171 - AluY SINE Alu 0 311 1 23 0 0 0 chr11 32172438 32172461 -116611011 + AT_rich Low_complexity Low_complexity 1 23 0 256 267 23 12 chr11 32172560 32172646 -116610826 + GA-rich Low_complexity Low_complexity 1 87 0 199 213 21 117 chr11 32173022 32173116 -116610356 - MIR SINE MIR -66 196 112 234 277 14 28 chr11 32173244 32173332 -116610140 + L1ME4a LINE L1 5979 6066 -55 2084 132 3 7 chr11 32173332 32173628 -116609844 - AluSx SINE Alu -17 295 1 234 277 14 28 chr11 32173628 32173680 -116609792 + L1ME4a LINE L1 6066 6117 -4 706 190 7 36 chr11 32173691 32173828 -116609644 - FLAM_A SINE Alu 0 133 1 295 250 0 0 chr11 32173847 32173911 -116609561 + MARNA DNA Mariner 341 404 -182 411 308 51 34 chr11 32173912 32174204 -116609268 + L1ME4a LINE L1 5533 5829 -292 333 275 190 20 chr11 32174442 32174595 -116608877 + L1ME4a LINE L1 5776 5902 -219 189 0 0 0 chr11 32174595 32174616 -116608856 + (TG)n Simple_repeat Simple_repeat 2 22 0 333 275 190 20 chr11 32174616 32174757 -116608715 + L1ME4a LINE L1 5902 6120 -1 215 300 14 0 chr11 32175405 32175475 -116607997 - L2 LINE L2 0 3272 3202 206 375 0 16 chr11 32175631 32175759 -116607713 - L2 LINE L2 -299 2973 2848 347 286 25 75 chr11 32177095 32177256 -116606216 + MIR SINE MIR 104 256 -6 521 313 14 0 chr11 32177276 32177423 -116606049 + MIR3 SINE MIR 47 195 -13 322 264 50 50 chr11 32177601 32177741 -116605731 - MIR SINE MIR -35 227 88 242 284 142 45 chr11 32178185 32178361 -116605111 + MIR SINE MIR 1 193 -69 284 264 45 27 chr11 32179104 32179214 -116604258 - MIR SINE MIR -65 197 86 318 329 112 0 chr11 32179442 32179603 -116603869 + MIR3 SINE MIR 21 199 -9 296 323 44 30 chr11 32179686 32179983 -116603489 + L1ME LINE L1 5525 5825 -296 23 0 0 0 chr11 32181849 32181872 -116601600 + AT_rich Low_complexity Low_complexity 1 23 0 192 179 0 0 chr11 32182726 32182765 -116600707 + GA-rich Low_complexity Low_complexity 2 40 0 321 299 4 135 chr11 32184549 32184684 -116598788 - L3 LINE CR1 -1 1576 1486 1696 190 0 25 chr11 32184684 32185000 -116598472 - AluJo SINE Alu -4 308 1 321 299 4 135 chr11 32185000 32185108 -116598364 - L3 LINE CR1 -91 1486 1365 406 303 138 7 chr11 32185190 32185335 -116598137 + MIR SINE MIR 86 249 -13 900 303 16 4 chr11 32185342 32185593 -116597879 + MIR SINE MIR 2 255 -7 248 282 60 43 chr11 32185645 32185762 -116597710 + MIR SINE MIR 100 218 -44 500 316 21 21 chr11 32185801 32185991 -116597481 - L3 LINE CR1 -226 1351 1162 1837 159 48 0 chr11 32186668 32186963 -116596509 - AluSx SINE Alu -3 309 1 186 286 20 0 chr11 32187155 32187204 -116596268 - L3 LINE CR1 -3 1574 1525 1872 154 6 49 chr11 32187403 32187728 -116595744 + AluJo SINE Alu 1 311 -1 21 0 0 0 chr11 32187959 32187980 -116595492 + AT_rich Low_complexity Low_complexity 1 21 0 435 297 42 18 chr11 32188359 32188524 -116594948 + MIR3 SINE MIR 7 175 -33 231 36 0 0 chr11 32188861 32188889 -116594583 + (T)n Simple_repeat Simple_repeat 1 28 0 348 320 0 0 chr11 32189636 32189736 -116593736 - L2 LINE L2 0 3272 3173 188 360 0 44 chr11 32190047 32190161 -116593311 - L2 LINE L2 -343 2929 2821 324 264 143 7 chr11 32190659 32190799 -116592673 - MIR SINE MIR -35 227 69 1522 106 179 0 chr11 32190945 32191191 -116592281 - AluSq SINE Alu -13 290 1 275 260 52 13 chr11 32192176 32192253 -116591219 - MIR SINE MIR -160 102 23 210 306 16 0 chr11 32192360 32192422 -116591050 - L2 LINE L2 0 3272 3210 836 183 153 7 chr11 32192643 32192917 -116590555 + LTR37A LTR ERV1 87 400 -26 660 300 4 36 chr11 32193101 32193290 -116590182 + MIR SINE MIR 16 196 -66 1782 156 7 27 chr11 32193290 32193591 -116589881 - AluJo SINE Alu -17 295 1 660 300 4 36 chr11 32193591 32193656 -116589816 + MIR SINE MIR 196 262 0 275 337 65 0 chr11 32196155 32196247 -116587225 - MIR SINE MIR -79 129 32 549 251 43 21 chr11 32196253 32196440 -116587032 - MIR SINE MIR 0 262 72 395 277 82 38 chr11 32196788 32196947 -116586525 + MIR SINE MIR 18 183 -79 331 298 41 41 chr11 32197495 32197656 -116585816 - L1ME4a LINE L1 -70 6051 5888 240 35 0 0 chr11 32197656 32197685 -116585787 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 331 298 41 41 chr11 32197685 32197818 -116585654 - L1ME4a LINE L1 -232 5889 5757 1935 142 14 14 chr11 32199570 32199866 -116583606 - AluSx SINE Alu -16 296 1 209 274 219 0 chr11 32200386 32200459 -116583013 - MIR SINE MIR -66 142 54 2568 115 3 3 chr11 32200511 32200875 -116582597 + THE1B LTR MaLR 1 364 0 299 263 0 74 chr11 32201251 32201346 -116582126 - MIR3 SINE MIR -6 202 115 464 257 128 39 chr11 32201677 32201856 -116581616 + MIR SINE MIR 68 262 0 193 234 64 0 chr11 32202217 32202264 -116581208 + L2 LINE L2 3223 3272 0 26 0 0 0 chr11 32202281 32202307 -116581165 + AT_rich Low_complexity Low_complexity 1 26 0 241 341 11 0 chr11 32203085 32203173 -116580299 - MARNA DNA Mariner -373 213 125 186 133 0 0 chr11 32203189 32203219 -116580253 + (CA)n Simple_repeat Simple_repeat 2 31 0 22 56 0 0 chr11 32203220 32203256 -116580216 + AT_rich Low_complexity Low_complexity 1 36 0 1670 200 3 19 chr11 32203441 32203793 -116579679 - AluJb SINE Alu 0 347 1 41 36 0 0 chr11 32204738 32204793 -116578679 + AT_rich Low_complexity Low_complexity 1 55 0 25 0 0 0 chr11 32205373 32205398 -116578074 + AT_rich Low_complexity Low_complexity 1 25 0 220 229 16 16 chr11 32207777 32207838 -116575634 + MIR SINE MIR 82 142 -66 26 0 0 0 chr11 32207923 32207949 -116575523 + AT_rich Low_complexity Low_complexity 1 26 0 328 268 143 9 chr11 32208059 32208171 -116575301 - L2 LINE L2 0 3313 3187 1556 141 23 4 chr11 32208266 32208528 -116574944 - MER1B DNA MER1_type 0 339 73 623 304 4 83 chr11 32209434 32209700 -116573772 - MIR SINE MIR -10 252 8 180 0 0 0 chr11 32211718 32211738 -116571734 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 420 246 0 97 chr11 32211738 32211872 -116571600 - L2 LINE L2 -13 3300 3180 280 293 75 60 chr11 32213158 32213291 -116570181 - MIR SINE MIR 0 262 128 1583 176 85 12 chr11 32215149 32215489 -116567983 - MLT1A1 LTR MaLR 0 365 1 255 354 95 7 chr11 32217972 32218119 -116565353 - MIR3 SINE MIR -9 199 40 6769 112 29 46 chr11 32218181 32218744 -116564728 + Tigger3b DNA MER2_type 1 572 -2456 970 124 7 7 chr11 32218744 32218897 -116564575 - L1PB3 LINE L1 -1 6153 6001 6769 112 29 46 chr11 32218897 32219578 -116563894 + Tigger3b DNA MER2_type 572 1224 -7 439 279 131 33 chr11 32220448 32220631 -116562841 - MIR SINE MIR -61 201 1 620 251 68 52 chr11 32221126 32221377 -116562095 - MIR SINE MIR -1 261 7 184 304 145 0 chr11 32222098 32222167 -116561305 + L2 LINE L2 3158 3236 -36 336 244 210 8 chr11 32222190 32222309 -116561163 - MIR3 SINE MIR -9 199 57 216 182 0 23 chr11 32223044 32223070 -116560402 + (CAGA)n Simple_repeat Simple_repeat 2 28 -16 192 77 0 0 chr11 32223070 32223096 -116560376 + (TAGG)n Simple_repeat Simple_repeat 2 27 0 216 182 0 23 chr11 32223096 32223113 -116560359 + (CAGA)n Simple_repeat Simple_repeat 28 44 0 186 288 121 0 chr11 32225001 32225067 -116558405 + MIR SINE MIR 76 149 -113 312 27 0 0 chr11 32228199 32228236 -116555236 + (T)n Simple_repeat Simple_repeat 1 37 0 344 22 22 0 chr11 32229412 32229457 -116554015 + (CA)n Simple_repeat Simple_repeat 2 47 0 40 0 0 0 chr11 32230444 32230484 -116552988 + GC_rich Low_complexity Low_complexity 1 40 0 23 54 0 0 chr11 32231208 32231245 -116552227 + GC_rich Low_complexity Low_complexity 1 37 0 233 185 15 15 chr11 32231352 32231417 -116552055 + (CGAG)n Simple_repeat Simple_repeat 2 66 0 231 140 0 0 chr11 32231996 32232046 -116551426 + (CA)n Simple_repeat Simple_repeat 2 51 0 1927 161 30 19 chr11 32235469 32235897 -116547575 - LTR56 LTR ERV1 -3 442 10 245 286 56 92 chr11 32236293 32236489 -116546983 - L2 LINE L2 0 3272 3084 436 288 33 118 chr11 32236577 32237028 -116546444 - L2 LINE L2 -408 2906 2494 424 182 61 47 chr11 32238037 32238185 -116545287 - L1ME4a LINE L1 0 6121 5972 848 258 22 0 chr11 32238236 32238414 -116545058 + MIR SINE MIR 51 232 -30 243 0 0 0 chr11 32241615 32241642 -116541830 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 21 57 0 0 chr11 32241808 32241843 -116541629 + AT_rich Low_complexity Low_complexity 1 35 0 965 270 68 83 chr11 32242580 32243184 -116540288 + MLT1G1 LTR MaLR 1 595 0 28 0 0 0 chr11 32243914 32243942 -116539530 + AT_rich Low_complexity Low_complexity 1 28 0 27 62 0 0 chr11 32244588 32244636 -116538836 + AT_rich Low_complexity Low_complexity 1 48 0 888 153 134 64 chr11 32244768 32244881 -116538591 - MER20 DNA MER1_type 0 219 115 3285 145 12 20 chr11 32244881 32245481 -116537991 - L1MB3 LINE L1 0 6183 5589 888 153 134 64 chr11 32245481 32245569 -116537903 - MER20 DNA MER1_type -104 115 4 334 300 22 11 chr11 32245989 32246079 -116537393 + MIR SINE MIR 23 113 -149 627 203 81 46 chr11 32246081 32246246 -116537226 + MER3 DNA MER1_type 5 180 -29 2482 134 5 3 chr11 32246246 32246620 -116536852 + THE1C LTR MaLR 1 375 0 627 203 81 46 chr11 32246620 32246651 -116536821 + MER3 DNA MER1_type 180 208 -1 483 313 8 0 chr11 32246661 32246795 -116536677 + MIR SINE MIR 120 254 -8 181 200 156 0 chr11 32246804 32246849 -116536623 + MIR SINE MIR 75 126 -82 353 324 71 8 chr11 32247323 32247479 -116535993 - MIR SINE MIR -62 146 4 469 336 99 9 chr11 32247697 32247929 -116535543 - MIR SINE MIR -4 258 6 434 179 13 0 chr11 32249264 32249342 -116534130 + MER116 DNA Mariner 2 80 0 359 191 56 32 chr11 32249961 32250087 -116533385 - L1MC4 LINE L1 0 8042 7914 299 337 27 43 chr11 32250529 32250713 -116532759 + L2 LINE L2 2591 2771 -543 2140 131 0 0 chr11 32251077 32251374 -116532098 + AluSx SINE Alu 1 297 -15 672 310 179 8 chr11 32251376 32251998 -116531474 + L2 LINE L2 2531 3272 -41 23 0 0 0 chr11 32252215 32252238 -116531234 + AT_rich Low_complexity Low_complexity 1 23 0 616 276 61 79 chr11 32252384 32252714 -116530758 + MER102a DNA MER1_type 1 324 -6 243 0 0 0 chr11 32252750 32252777 -116530695 + (T)n Simple_repeat Simple_repeat 1 27 0 261 276 0 0 chr11 32252917 32252975 -116530497 - MER69 DNA AcHobo -1 2525 2468 21 23 0 47 chr11 32253015 32253031 -116530441 + AT_rich Low_complexity Low_complexity 1 16 -25 2181 98 0 49 chr11 32253031 32253356 -116530116 + AluSg SINE Alu 1 309 -1 21 23 0 47 chr11 32253356 32253382 -116530090 + AT_rich Low_complexity Low_complexity 16 41 0 432 277 0 0 chr11 32253382 32253476 -116529996 - MER69 DNA AcHobo -1130 96 3 1123 223 143 53 chr11 32253716 32254129 -116529343 + LTR33A LTR ERVL 66 515 -8 458 203 23 30 chr11 32254535 32254668 -116528804 - L1MC5 LINE L1 -48 7913 7782 273 57 0 0 chr11 32254722 32254745 -116528727 + (TG)n Simple_repeat Simple_repeat 1 58 0 273 57 0 0 chr11 32254745 32254780 -116528692 + (TG)n Simple_repeat Simple_repeat 2 36 0 663 210 0 0 chr11 32254796 32254915 -116528557 - FRAM SINE Alu -30 146 28 4574 231 84 73 chr11 32254931 32255808 -116527664 - L1ME2 LINE L1 -32 6066 5200 1427 162 3 110 chr11 32255808 32256135 -116527337 - AluJb SINE Alu -6 296 5 4574 231 84 73 chr11 32256135 32257341 -116526131 - L1ME2 LINE L1 -898 5200 4009 864 199 6 6 chr11 32257341 32257507 -116525965 - FRAM SINE Alu 0 166 1 4574 231 84 73 chr11 32257507 32258762 -116524710 - L1ME2 LINE L1 -2089 4009 2686 22 35 0 0 chr11 32258762 32258791 -116524681 + AT_rich Low_complexity Low_complexity 1 29 0 5259 179 22 26 chr11 32258791 32259050 -116524422 - L1MA10 LINE L1 -29 6305 6047 1914 127 0 23 chr11 32259050 32259350 -116524122 - AluSg SINE Alu -17 293 1 5259 179 22 26 chr11 32259350 32260541 -116522931 - L1MA10 LINE L1 -287 6047 4853 255 250 68 11 chr11 32260552 32260640 -116522832 - L1ME2 LINE L1 -5478 592 500 237 325 113 53 chr11 32260866 32261017 -116522455 - L2 LINE L2 -5 3308 3149 1410 199 39 23 chr11 32261101 32261407 -116522065 - AluJo SINE Alu -1 311 1 197 362 0 29 chr11 32261522 32261591 -116521881 - L2 LINE L2 -1 3312 3246 248 374 30 8 chr11 32261707 32261838 -116521634 - MIR SINE MIR -109 153 20 568 293 42 59 chr11 32263218 32263505 -116519967 + MLT1J LTR MaLR 230 511 0 184 304 118 39 chr11 32263513 32263615 -116519857 - L2 LINE L2 -12 3260 3151 530 291 98 47 chr11 32263925 32264376 -116519096 - L1MEd LINE L1 -4862 1257 784 1289 174 32 124 chr11 32264967 32265369 -116518103 + MLT1A1 LTR MaLR 1 365 0 485 352 99 46 chr11 32265437 32265580 -116517892 + L2 LINE L2 2526 2660 -612 1005 155 4 105 chr11 32265580 32265819 -116517653 - MER20 DNA MER1_type -4 215 1 485 352 99 46 chr11 32265819 32266116 -116517356 + L2 LINE L2 2660 2987 -285 22 80 0 0 chr11 32266630 32266680 -116516792 + AT_rich Low_complexity Low_complexity 1 50 0 1463 164 6 74 chr11 32267669 32267980 -116515492 - L1MC1 LINE L1 -6 6327 6038 255 305 12 0 chr11 32267983 32268065 -116515407 - L1MC2 LINE L1 -277 6067 5985 * 3130 167 96 26 chr11 32268051 32268894 -116514578 - L1MCa LINE L1 -3915 2692 1761 950 75 0 8 chr11 32268894 32269027 -116514445 - Alu SINE Alu -12 298 167 1061 25 0 0 chr11 32269028 32269149 -116514323 + AluY SINE Alu 11 131 -180 3017 142 42 13 chr11 32269177 32269566 -116513906 - L1MCa LINE L1 -4819 1607 1192 193 0 61 30 chr11 32269566 32269599 -116513873 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3017 142 42 13 chr11 32269599 32269831 -116513641 - L1MCa LINE L1 -5234 1192 968 2509 196 163 33 chr11 32269834 32270472 -116513000 - L1MCa LINE L1 -5686 740 20 199 258 79 79 chr11 32273235 32273324 -116510148 + MER5B DNA MER1_type 66 154 -24 * 360 261 54 18 chr11 32273245 32273356 -116510116 - MER5A DNA MER1_type -73 116 2 197 339 49 105 chr11 32273858 32274183 -116509289 - L2 LINE L2 -115 3157 2851 415 270 103 59 chr11 32274543 32274583 -116508889 + MLT1L LTR MaLR 219 256 -359 1695 210 96 25 chr11 32274583 32275054 -116508418 - MLT1D LTR MaLR -1 504 1 415 270 103 59 chr11 32275054 32275354 -116508118 + MLT1L LTR MaLR 256 574 -41 1471 113 122 60 chr11 32275376 32275695 -116507777 + MER44D DNA MER2_type 1 609 0 389 275 92 0 chr11 32275815 32275935 -116507537 - MIR3 SINE MIR -41 167 37 387 303 13 23 chr11 32278941 32279074 -116504398 - MIR SINE MIR -57 151 32 210 71 0 0 chr11 32282517 32282545 -116500927 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 210 171 0 0 chr11 32282685 32282720 -116500752 + A-rich Low_complexity Low_complexity 1 35 0 221 219 27 55 chr11 32284366 32284439 -116499033 + MIR SINE MIR 18 88 -120 680 213 44 16 chr11 32284498 32284681 -116498791 - MER53 DNA DNA -1 188 1 3708 105 20 2 chr11 32285025 32285569 -116497903 + MER41A LTR ERV1 1 554 0 4107 142 30 57 chr11 32285569 32286367 -116497105 + MER41A-int LTR ERV1 1 690 -5256 2590 151 55 66 chr11 32286368 32287012 -116496460 + MER41A-int LTR ERV1 650 1300 -4646 2231 111 7 0 chr11 32287012 32287319 -116496153 + AluSx SINE Alu 1 309 -3 2590 151 55 66 chr11 32287319 32287674 -116495798 + MER41A-int LTR ERV1 1300 2962 -2984 * 6523 128 13 31 chr11 32287668 32288970 -116494502 + MER41A-int LTR ERV1 2807 4086 -929 5638 105 9 7 chr11 32289003 32289867 -116493605 + MER41A-int LTR ERV1 5057 5922 -24 605 144 21 0 chr11 32289867 32289964 -116493508 + AluSg/x SINE Alu 205 303 -9 2953 86 14 2 chr11 32289991 32290420 -116493052 + MER41A LTR ERV1 1 434 -120 2095 82 10 56 chr11 32290424 32290727 -116492745 - AluSq SINE Alu -24 289 1 180 0 0 0 chr11 32292231 32292251 -116491221 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1149 185 21 24 chr11 32292873 32293160 -116490312 - L1ME2 LINE L1 -213 5951 5666 3474 158 52 15 chr11 32293320 32294037 -116489435 - L1MB4 LINE L1 -13 6167 5425 278 267 91 12 chr11 32294040 32294205 -116489267 - L1ME LINE L1 -419 5702 5525 2296 109 0 7 chr11 32294435 32294737 -116488735 - AluSx SINE Alu -12 300 1 2097 158 14 3 chr11 32294828 32295189 -116488283 + MLT1A1 LTR MaLR 1 365 0 321 234 133 70 chr11 32295250 32295455 -116488017 - MIR SINE MIR -30 232 19 24 32 0 0 chr11 32295905 32295936 -116487536 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr11 32296101 32296123 -116487349 + AT_rich Low_complexity Low_complexity 1 22 0 444 326 11 129 chr11 32296267 32296617 -116486855 - L2 LINE L2 -49 3223 2915 1644 168 3 39 chr11 32296644 32296954 -116486518 + AluJb SINE Alu 1 299 -13 316 102 29 9 chr11 32296954 32297066 -116486406 + GA-rich Low_complexity Low_complexity 1 114 0 1322 22 5 32 chr11 32297069 32297254 -116486218 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 180 0 0 0 chr11 32297256 32297276 -116486196 + (GGAA)n Simple_repeat Simple_repeat 3 22 0 342 354 52 21 chr11 32297309 32297411 -116486061 - L2 LINE L2 -463 2851 2754 2459 76 0 0 chr11 32297411 32297715 -116485757 + AluY SINE Alu 1 304 -7 342 354 52 21 chr11 32297715 32297937 -116485535 - L2 LINE L2 -560 2754 2517 1123 200 23 0 chr11 32298023 32298238 -116485234 + MER58A DNA MER1_type 1 220 -4 291 93 0 0 chr11 32298255 32298298 -116485174 + (TG)n Simple_repeat Simple_repeat 2 44 0 * 459 92 0 0 chr11 32298297 32298362 -116485110 + (TA)n Simple_repeat Simple_repeat 2 66 0 2165 147 72 3 chr11 32298379 32298768 -116484704 - MSTA LTR MaLR -9 419 4 2043 140 41 0 chr11 32298819 32299161 -116484311 + Tigger2 DNA MER2_type 2361 2716 -2 324 0 0 0 chr11 32299161 32299197 -116484275 + (TG)n Simple_repeat Simple_repeat 1 36 0 256 318 118 12 chr11 32299212 32299457 -116484015 - L2 LINE L2 -944 2370 2100 1774 212 49 24 chr11 32299512 32299965 -116483507 - MLT1C LTR MaLR -3 464 1 23 0 0 0 chr11 32300969 32300992 -116482480 + AT_rich Low_complexity Low_complexity 1 23 0 301 269 26 0 chr11 32301009 32301087 -116482385 + L1MC3 LINE L1 6572 6651 -1134 700 309 87 28 chr11 32301930 32302399 -116481073 - L1M4 LINE L1 -745 5401 4905 676 257 43 43 chr11 32302508 32302784 -116480688 - L1M4 LINE L1 -1933 4213 3938 371 299 14 0 chr11 32302919 32303065 -116480407 - MLT1J2 LTR MaLR -232 214 63 2161 249 108 21 chr11 32303177 32303883 -116479589 - MER21B LTR ERV1 -54 809 43 358 239 0 0 chr11 32303886 32303957 -116479515 - MER21B LTR ERV1 -774 89 19 2219 121 7 0 chr11 32304049 32304355 -116479117 + AluSx SINE Alu 4 311 -1 441 54 0 0 chr11 32304450 32304506 -116478966 + (TA)n Simple_repeat Simple_repeat 2 57 0 249 83 0 0 chr11 32304555 32304591 -116478881 + (GA)n Simple_repeat Simple_repeat 1 36 0 1572 197 14 25 chr11 32304592 32304876 -116478596 - AluJo SINE Alu -31 281 1 725 201 51 26 chr11 32304913 32305147 -116478325 + L1MD3 LINE L1 7680 7995 0 291 279 115 77 chr11 32305302 32305485 -116477987 + MIR SINE MIR 67 256 -6 180 0 0 0 chr11 32305488 32305508 -116477964 + (CAT)n Simple_repeat Simple_repeat 2 21 0 593 287 14 91 chr11 32305962 32306237 -116477235 + LTR33 LTR ERVL 242 495 -26 652 340 78 13 chr11 32306505 32306737 -116476735 - MIR SINE MIR -3 259 13 1593 260 55 34 chr11 32306795 32307302 -116476170 - LTR33 LTR ERVL -1 520 3 314 243 96 52 chr11 32308339 32308475 -116474997 + MER20B DNA MER1_type 29 170 -613 612 265 133 33 chr11 32309274 32309485 -116473987 + MIR SINE MIR 29 260 -2 2707 90 8 13 chr11 32309589 32309966 -116473506 - THE1C LTR MaLR 0 375 1 360 73 18 0 chr11 32310228 32310283 -116473189 - MADE1 DNA Mariner 0 80 25 251 270 0 0 chr11 32310294 32310357 -116473115 + MLT1J LTR MaLR 111 173 -338 377 285 165 15 chr11 32310805 32311072 -116472400 + MLT1I LTR MaLR 25 331 -78 213 225 0 0 chr11 32311124 32311164 -116472308 + GA-rich Low_complexity Low_complexity 3 42 0 1000 280 55 41 chr11 32311825 32312612 -116470860 - L2 LINE L2 0 3313 2485 501 251 246 0 chr11 32312648 32312835 -116470637 + MIR SINE MIR 28 260 -2 392 0 21 0 chr11 32313264 32313312 -116470160 + (CA)n Simple_repeat Simple_repeat 2 50 0 696 298 36 4 chr11 32313549 32313797 -116469675 - MIR SINE MIR -2 260 5 1149 199 55 16 chr11 32314340 32314652 -116468820 + MER33 DNA MER1_type 1 324 0 411 256 67 18 chr11 32315288 32315452 -116468020 + LTR16C LTR ERVL 305 476 -15 210 253 145 0 chr11 32315499 32315582 -116467890 + MIR SINE MIR 120 214 -48 1366 222 34 58 chr11 32316506 32316921 -116466551 + MLT1D LTR MaLR 1 405 -100 209 231 103 77 chr11 32317676 32317754 -116465718 - L2 LINE L2 -7 3265 3186 258 291 154 9 chr11 32317992 32318130 -116465342 - MIR SINE MIR -78 130 32 23034 53 2 1 chr11 32318676 32321674 -116461798 + L1PA4 LINE L1 1 3001 -3145 1554 40 0 0 chr11 32321672 32321871 -116461601 + L1P LINE L1 4551 4749 -1397 * 19434 35 0 1 chr11 32321871 32325019 -116458453 + L1PA4 LINE L1 3006 6153 -2 375 333 0 0 chr11 32325183 32325285 -116458187 + MIR SINE MIR 38 139 -69 918 222 43 30 chr11 32325328 32325558 -116457914 - MIR SINE MIR -15 247 15 646 311 31 15 chr11 32325568 32325828 -116457644 - MLT1L LTR MaLR -2 613 350 181 248 83 64 chr11 32326352 32326461 -116457011 + L2 LINE L2 2890 3000 -272 4249 172 13 9 chr11 32326585 32327351 -116456121 + Tigger7 DNA MER2_type 2 770 -1717 2028 123 57 3 chr11 32327351 32327702 -116455770 + Tigger7 DNA MER2_type 2118 2487 0 2757 83 8 0 chr11 32327950 32328310 -116455162 + THE1B LTR MaLR 2 364 0 229 328 0 0 chr11 32328967 32329031 -116454441 + MIR3 SINE MIR 138 201 -7 600 191 124 62 chr11 32329692 32329933 -116453539 + ORSL DNA AcHobo 1 256 -19 258 265 108 35 chr11 32330229 32330401 -116453071 - MIR SINE MIR 0 262 29 363 335 91 15 chr11 32331198 32331395 -116452077 + MIR SINE MIR 49 260 -2 2282 240 50 24 chr11 32331751 32332492 -116450980 - MER20B DNA MER1_type -22 761 2 23 86 0 0 chr11 32332775 32332833 -116450639 + AT_rich Low_complexity Low_complexity 1 58 0 11665 202 160 55 chr11 32332834 32334376 -116449096 + L1P3 LINE L1 687 2067 -4394 730 171 0 0 chr11 32334376 32334493 -116448979 - AluSg/x SINE Alu -14 298 182 11665 202 160 55 chr11 32334493 32335460 -116448012 + L1P3 LINE L1 2067 2932 -3529 1551 112 0 0 chr11 32335460 32335665 -116447807 + AluSq SINE Alu 1 205 -108 11665 202 160 55 chr11 32335665 32337028 -116446444 + L1P3 LINE L1 2932 5067 -1394 562 259 29 7 chr11 32337281 32337420 -116446052 + MIR SINE MIR 50 191 -71 588 257 118 37 chr11 32337467 32337942 -116445530 - MLT1K LTR MaLR -34 554 7 266 231 46 0 chr11 32338142 32338207 -116445265 + L2 LINE L2 3205 3272 0 515 281 58 29 chr11 32338321 32338381 -116445091 - MER5A DNA MER1_type -4 185 128 2134 117 38 0 chr11 32338381 32338672 -116444800 + AluSx SINE Alu 1 302 -10 515 281 58 29 chr11 32338672 32338782 -116444690 - MER5A DNA MER1_type -61 128 10 1970 130 67 9 chr11 32338786 32339131 -116444341 - MLT1A1 LTR MaLR 0 365 1 6048 97 22 15 chr11 32339646 32340710 -116442762 + L1PA11 LINE L1 5104 6173 -1 23 0 0 0 chr11 32341886 32341909 -116441563 + AT_rich Low_complexity Low_complexity 1 23 0 29 78 0 0 chr11 32342762 32342826 -116440646 + AT_rich Low_complexity Low_complexity 1 64 0 279 284 164 0 chr11 32343029 32343145 -116440327 + L2 LINE L2 3138 3272 0 330 277 0 12 chr11 32343167 32343250 -116440222 + MIR3 SINE MIR 110 191 -17 273 261 151 42 chr11 32343268 32343387 -116440085 + MER5A DNA MER1_type 55 186 -3 2676 209 55 151 chr11 32344612 32345318 -116438154 + L1MC4a LINE L1 5851 6275 -1533 2068 124 33 15 chr11 32345318 32345649 -116437823 - MER1B DNA MER1_type 0 337 1 2676 209 55 151 chr11 32345649 32346589 -116436883 + L1MC4a LINE L1 6275 7304 -504 515 159 9 18 chr11 32346593 32346706 -116436766 + L1MA9 LINE L1 5922 6033 -279 207 162 0 0 chr11 32346708 32346745 -116436727 + (CATATA)n Simple_repeat Simple_repeat 6 42 0 3379 149 61 38 chr11 32346748 32347465 -116436007 - L1MA9 LINE L1 -36 6276 5543 1407 221 48 61 chr11 32347458 32347779 -116435693 + L1MD3 LINE L1 7536 7851 -144 * 2605 94 8 24 chr11 32347779 32348160 -116435312 - THE1C LTR MaLR 0 375 1 1407 221 48 61 chr11 32348160 32348294 -116435178 + L1MD3 LINE L1 7851 7985 -10 276 77 0 0 chr11 32348516 32348555 -116434917 + (CA)n Simple_repeat Simple_repeat 2 40 0 484 307 31 47 chr11 32348656 32348965 -116434507 - MLT1I LTR MaLR -77 332 59 443 288 125 53 chr11 32349035 32349299 -116434173 + L2 LINE L2 3030 3312 -1 227 231 19 0 chr11 32349351 32349403 -116434069 + L2 LINE L2 3220 3272 0 22 0 0 0 chr11 32350182 32350204 -116433268 + AT_rich Low_complexity Low_complexity 1 22 0 685 231 0 0 chr11 32351092 32351213 -116432259 - MER58A DNA MER1_type 0 121 1 384 280 14 21 chr11 32351235 32351378 -116432094 - L1ME LINE L1 -439 5682 5541 355 287 85 27 chr11 32351683 32352015 -116431457 - MLT1I LTR MaLR -3 447 80 1376 214 31 22 chr11 32352015 32352370 -116431102 - L1MC4a LINE L1 -435 7373 7016 4888 150 13 33 chr11 32352533 32353453 -116430019 + L1MA3 LINE L1 5403 6304 -1 281 179 18 0 chr11 32353508 32353564 -116429908 - Alu SINE Alu -2 299 243 917 136 8 0 chr11 32353564 32353696 -116429776 - AluSq/x SINE Alu -179 133 1 1452 180 27 4 chr11 32353698 32353719 -116429753 - AluJo SINE Alu -8 304 285 195 42 0 0 chr11 32353719 32353743 -116429729 + (TCCC)n Simple_repeat Simple_repeat 1 24 0 * 870 101 20 7 chr11 32353742 32353891 -116429581 + (TTTC)n Simple_repeat Simple_repeat 3 153 0 1452 180 27 4 chr11 32353743 32354125 -116429347 - AluJo SINE Alu -27 285 43 21 82 0 0 chr11 32354425 32354474 -116428998 + AT_rich Low_complexity Low_complexity 1 49 0 374 303 66 13 chr11 32355291 32355442 -116428030 + MIR SINE MIR 34 191 -71 226 213 0 53 chr11 32356080 32356174 -116427298 - L1MC4 LINE L1 -1339 6703 6615 238 286 0 0 chr11 32356384 32356440 -116427032 - MER91B DNA MER1_type -133 57 2 283 312 0 37 chr11 32356462 32356571 -116426901 - L1MC4 LINE L1 -2020 5788 5684 226 238 32 0 chr11 32357470 32357533 -116425939 - LTR48 LTR ERV1 -618 169 105 274 324 7 44 chr11 32357820 32357956 -116425516 - MIR3 SINE MIR -6 202 72 378 315 62 28 chr11 32358161 32358339 -116425133 + MIR SINE MIR 9 192 -70 199 286 27 109 chr11 32358491 32358533 -116424939 + MIR3 SINE MIR 74 118 -90 1640 158 40 20 chr11 32358533 32358831 -116424641 + AluJb SINE Alu 1 304 -8 199 286 27 109 chr11 32358831 32358935 -116424537 + MIR3 SINE MIR 118 208 0 * 341 220 248 28 chr11 32358926 32359035 -116424437 - MER5A DNA MER1_type 0 178 46 414 340 7 7 chr11 32359047 32359191 -116424281 + MIR SINE MIR 119 262 0 454 295 104 36 chr11 32359303 32359496 -116423976 + MER102a DNA MER1_type 125 330 0 209 238 0 0 chr11 32361272 32361314 -116422158 + T-rich Low_complexity Low_complexity 1 42 0 300 27 0 0 chr11 32362890 32362927 -116420545 + (CA)n Simple_repeat Simple_repeat 2 38 0 29 47 0 0 chr11 32362978 32363021 -116420451 + AT_rich Low_complexity Low_complexity 1 43 0 261 0 0 0 chr11 32363496 32363525 -116419947 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1186 267 110 7 chr11 32365020 32365465 -116418007 + LTR16C LTR ERVL 1 491 0 377 67 17 0 chr11 32365606 32365666 -116417806 - L1PB2 LINE L1 -2 6149 6089 336 262 13 7 chr11 32366134 32366230 -116417242 + MIR SINE MIR 49 142 -66 205 246 82 16 chr11 32366464 32366525 -116416947 + MIR SINE MIR 82 146 -62 1354 234 39 20 chr11 32366608 32366963 -116416509 - L1ME1 LINE L1 -8 6158 5797 1028 246 30 4 chr11 32367197 32367433 -116416039 - MLT1F LTR MaLR -45 497 256 * 1634 227 37 15 chr11 32367421 32367827 -116415645 + MLT1C LTR MaLR 52 466 -1 474 139 0 0 chr11 32367827 32367899 -116415573 - MLT1F LTR MaLR -470 72 1 841 335 90 19 chr11 32367900 32368486 -116414986 - L2 LINE L2 -190 3082 2454 300 355 36 29 chr11 32368898 32369036 -116414436 + L2 LINE L2 3132 3270 -2 455 323 56 41 chr11 32369193 32369388 -116414084 - L2 LINE L2 -2 3311 3114 925 78 7 14 chr11 32369509 32369650 -116413822 + (GAAA)n Simple_repeat Simple_repeat 4 143 0 2222 119 3 6 chr11 32369655 32369967 -116413505 + AluSx SINE Alu 1 311 -1 562 254 95 32 chr11 32370084 32370368 -116413104 - L1ME4a LINE L1 -203 5918 5617 194 329 37 0 chr11 32371043 32371125 -116412347 - MIR3 SINE MIR -9 199 115 213 350 77 8 chr11 32371423 32371540 -116411932 - MIR3 SINE MIR -72 136 12 1474 108 45 18 chr11 32371563 32371786 -116411686 + MER30 DNA MER1_type 2 230 0 229 278 48 0 chr11 32371794 32371871 -116411601 + MIR SINE MIR 71 144 -64 2061 119 19 19 chr11 32372940 32373064 -116410408 + AluSg SINE Alu 1 124 -186 270 0 0 0 chr11 32373064 32373094 -116410378 + (CAAAA)n Simple_repeat Simple_repeat 5 34 0 2061 119 19 19 chr11 32373094 32373279 -116410193 + AluSg SINE Alu 123 310 0 430 253 45 65 chr11 32373375 32373529 -116409943 + MIR SINE MIR 56 206 -56 206 158 26 0 chr11 32375554 32375592 -116407880 - MIR SINE MIR -13 249 211 207 268 42 14 chr11 32376279 32376350 -116407122 - MIR SINE MIR -108 154 82 1851 136 7 4 chr11 32376898 32377178 -116406294 + AluJb SINE Alu 22 302 -10 343 280 69 0 chr11 32377244 32377345 -116406127 + L1M4c LINE L1 1559 1852 -891 1120 309 102 30 chr11 32378120 32379277 -116404195 + L1M4c LINE L1 2819 4058 -2324 401 220 92 21 chr11 32379321 32379462 -116404010 - MLT1L LTR MaLR -26 589 439 378 212 0 35 chr11 32379699 32379784 -116403688 - MLT1L LTR MaLR -530 85 4 464 309 85 8 chr11 32379784 32380020 -116403452 + L1M4c LINE L1 4073 4326 -2056 229 200 29 14 chr11 32380047 32380117 -116403355 + (TA)n Simple_repeat Simple_repeat 2 72 0 376 194 0 0 chr11 32381219 32381281 -116402191 - MER45 DNA AcHobo 0 1581 1520 316 200 0 0 chr11 32381291 32381341 -116402131 - MER45 DNA AcHobo -903 50 1 456 276 21 14 chr11 32381590 32381735 -116401737 - MIR SINE MIR -5 257 112 1297 240 64 25 chr11 32381986 32382378 -116401094 + MLT1I LTR MaLR 1 407 -2 896 252 65 9 chr11 32382526 32382756 -116400716 - MIR SINE MIR 0 262 20 1942 13 35 0 chr11 32382759 32382990 -116400482 - L1PA2 LINE L1 0 6155 5917 2482 11 11 0 chr11 32382990 32383277 -116400195 + L1PA2 LINE L1 5624 5913 -242 741 250 60 63 chr11 32383611 32383911 -116399561 + MLT1K LTR MaLR 275 573 -15 826 285 42 0 chr11 32384653 32384867 -116398605 - MER58A DNA MER1_type 0 224 2 281 272 111 38 chr11 32385229 32385482 -116397990 + MIR SINE MIR 20 248 -14 281 342 26 9 chr11 32385503 32385617 -116397855 - MIR SINE MIR -145 117 2 354 313 0 0 chr11 32386122 32386221 -116397251 - MIR3 SINE MIR -18 190 92 879 119 21 62 chr11 32386303 32386496 -116396976 + MER53 DNA DNA 1 185 -4 192 125 0 0 chr11 32386588 32386620 -116396852 + (A)n Simple_repeat Simple_repeat 1 32 0 256 236 11 56 chr11 32386919 32387008 -116396464 - HAL1 LINE L1 -6 2501 2417 838 133 41 77 chr11 32387036 32387232 -116396240 + MER53 DNA DNA 1 189 0 362 301 0 26 chr11 32387316 32387429 -116396043 + MER81 DNA DNA 2 111 -3 465 329 26 0 chr11 32388923 32389075 -116394397 - MIR3 SINE MIR -37 171 16 365 365 18 6 chr11 32389558 32389725 -116393747 - L3 LINE CR1 -68 1509 1341 308 312 83 0 chr11 32389908 32390017 -116393455 + LTR33A LTR ERVL 71 188 -335 381 257 59 0 chr11 32390092 32390193 -116393279 + LTR33 LTR ERVL 415 521 0 280 331 38 87 chr11 32390193 32390562 -116392910 - L3 LINE CR1 -363 1214 864 246 81 0 0 chr11 32391783 32391820 -116391652 + (CA)n Simple_repeat Simple_repeat 2 38 0 1388 206 42 83 chr11 32392547 32393003 -116390469 + MLT2C2 LTR ERVL 1 437 -27 461 308 79 40 chr11 32393059 32393286 -116390186 - MIR SINE MIR -1 261 26 514 323 95 4 chr11 32393403 32393635 -116389837 - MIR SINE MIR -6 256 4 346 286 9 9 chr11 32396737 32396842 -116386630 + MLT1I LTR MaLR 99 203 -206 2098 182 28 9 chr11 32396954 32397393 -116386079 - LTR45B LTR ERV1 -43 446 1 421 232 26 80 chr11 32397715 32397866 -116385606 - MIR3 SINE MIR -63 145 3 518 287 112 26 chr11 32398471 32398895 -116384577 + L2 LINE L2 2684 3168 -145 348 83 0 0 chr11 32398895 32398943 -116384529 + (TG)n Simple_repeat Simple_repeat 2 49 0 518 287 112 26 chr11 32398943 32399103 -116384369 + L2 LINE L2 3168 3313 0 1158 243 68 66 chr11 32399481 32399999 -116383473 - LTR33 LTR ERVL 0 521 3 942 271 29 16 chr11 32400007 32400251 -116383221 - MIR SINE MIR -13 249 3 366 277 114 31 chr11 32400823 32401155 -116382317 - L1ME4a LINE L1 -46 6075 5695 293 274 17 42 chr11 32402263 32402386 -116381086 - MIR SINE MIR -84 124 4 267 244 78 9 chr11 32402788 32402903 -116380569 + LTR67 LTR ERVL 420 542 -15 270 214 0 0 chr11 32403146 32403202 -116380270 - MIR3 SINE MIR -14 194 139 22 0 0 0 chr11 32403461 32403483 -116379989 + AT_rich Low_complexity Low_complexity 1 22 0 740 265 109 0 chr11 32404167 32404378 -116379094 + MIR SINE MIR 28 261 -1 206 238 12 119 chr11 32405396 32405480 -116377992 + MIR3 SINE MIR 109 183 -25 327 330 73 52 chr11 32405652 32405982 -116377490 - L1MEc LINE L1 -4185 2211 1875 384 322 121 0 chr11 32405995 32406284 -116377188 - L1MEc LINE L1 -4576 1820 1497 445 256 33 33 chr11 32406551 32406766 -116376706 - L1MEc LINE L1 -5007 1198 984 1056 256 94 46 chr11 32407737 32408256 -116375216 + MLT1G LTR MaLR 1 574 -16 243 286 174 10 chr11 32408694 32408792 -116374680 - L3 LINE CR1 -4 1573 1460 968 290 106 64 chr11 32409117 32409648 -116373824 - L3 LINE CR1 -393 1184 632 605 230 132 0 chr11 32409902 32410054 -116373418 - MER5B DNA MER1_type -6 172 1 285 286 93 21 chr11 32410074 32410215 -116373257 + MIR SINE MIR 13 162 -61 212 376 128 0 chr11 32411055 32411172 -116372300 - L2 LINE L2 -2 3270 3139 609 196 78 11 chr11 32411193 32411372 -116372100 + L1MD3 LINE L1 7796 7986 -9 2372 70 0 0 chr11 32411373 32411693 -116371779 + AluY SINE Alu 1 320 0 1983 187 55 59 chr11 32411867 32412260 -116371212 - MLT1D LTR MaLR 0 505 113 2302 103 3 22 chr11 32412260 32412579 -116370893 + AluSp SINE Alu 1 313 0 1983 187 55 59 chr11 32412579 32412692 -116370780 - MLT1D LTR MaLR -392 113 1 1188 232 82 12 chr11 32412818 32413159 -116370313 - MLT1B LTR MaLR -25 365 1 190 351 81 40 chr11 32413198 32413372 -116370100 - L2 LINE L2 -536 2778 2598 2324 105 3 6 chr11 32413388 32413701 -116369771 + AluSx SINE Alu 1 312 0 334 274 85 52 chr11 32413767 32413920 -116369552 + L1MEd LINE L1 48 205 -5914 482 236 118 15 chr11 32414260 32414455 -116369017 + HAL1 LINE L1 1151 1365 -1142 463 219 26 0 chr11 32414601 32414715 -116368757 + HAL1 LINE L1 2243 2359 -148 1070 310 126 44 chr11 32414755 32415669 -116367803 + L2 LINE L2 440 1428 -1886 499 198 0 45 chr11 32415678 32415789 -116367683 + MIR SINE MIR 52 157 -105 964 187 61 98 chr11 32415945 32416271 -116367201 + MER2 DNA MER2_type 31 344 -1 595 313 97 37 chr11 32416272 32416592 -116366880 + L2 LINE L2 1477 1821 -1493 1377 208 20 41 chr11 32416592 32416886 -116366586 - AluJo SINE Alu -24 288 1 595 313 97 37 chr11 32416886 32416916 -116366556 + L2 LINE L2 1821 1848 -1466 602 192 8 8 chr11 32417018 32417148 -116366324 - MLT1A2 LTR MaLR 0 374 245 837 244 74 0 chr11 32417148 32417365 -116366107 + MIR SINE MIR 30 262 0 248 293 140 47 chr11 32417361 32417511 -116365961 + L2 LINE L2 3149 3312 -1 * 197 224 165 12 chr11 32417550 32417635 -116365837 - L2 LINE L2 -1329 1985 1888 257 241 52 0 chr11 32417681 32417739 -116365733 - MIR SINE MIR -76 186 126 215 30 0 30 chr11 32421062 32421095 -116362377 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1961 105 91 0 chr11 32421215 32421500 -116361972 - AluY SINE Alu 0 311 1 409 333 98 11 chr11 32421570 32421834 -116361638 - L1 LINE L1 -3090 3056 2770 2337 91 3 0 chr11 32422446 32422744 -116360728 + AluSx SINE Alu 2 300 -12 21 0 0 0 chr11 32423396 32423417 -116360055 + AT_rich Low_complexity Low_complexity 1 21 0 962 216 58 149 chr11 32424527 32425211 -116358261 - L1ME3A LINE L1 -15 6155 5562 2184 103 0 0 chr11 32425211 32425520 -116357952 - AluSg SINE Alu 0 309 1 962 216 58 149 chr11 32425520 32425685 -116357787 - L1ME3A LINE L1 -608 5562 5383 391 221 168 38 chr11 32425767 32425923 -116357549 - MIR SINE MIR -43 165 16 188 307 40 59 chr11 32425915 32426016 -116357456 - L2 LINE L2 -603 2711 2613 * 571 236 124 12 chr11 32426260 32426502 -116356970 - L1ME4a LINE L1 -79 6042 5774 312 245 20 31 chr11 32426504 32426602 -116356870 - L1ME4a LINE L1 -392 5729 5633 533 234 0 19 chr11 32427544 32427678 -116355794 + MER5A DNA MER1_type 4 134 -55 307 200 0 0 chr11 32427712 32427767 -116355705 + MER5A DNA MER1_type 1 55 -134 1271 151 30 17 chr11 32427768 32428000 -116355472 + AluJo SINE Alu 66 300 -12 611 236 16 8 chr11 32428000 32428123 -116355349 + MER5A DNA MER1_type 66 189 0 925 190 20 25 chr11 32428155 32428355 -116355117 - MER58A DNA MER1_type -24 200 2 592 247 28 67 chr11 32428368 32428546 -116354926 + MER5B DNA MER1_type 5 175 -3 202 220 119 0 chr11 32429725 32429784 -116353688 - MIR3 SINE MIR -52 156 91 1414 88 51 225 chr11 32430003 32430376 -116353096 + AluSx SINE Alu 1 308 -4 358 253 0 24 chr11 32430383 32430466 -116353006 - MER5A DNA MER1_type -60 129 49 495 287 45 49 chr11 32431830 32432053 -116351419 + L1ME4a LINE L1 5255 5476 -2332 56 0 0 0 chr11 32432060 32432116 -116351356 + AT_rich Low_complexity Low_complexity 1 56 0 298 256 97 88 chr11 32432128 32432415 -116351057 + L1ME4a LINE L1 5497 5791 -330 3883 208 52 19 chr11 32432415 32433250 -116350222 - MER21B LTR ERV1 -1 862 1 298 256 97 88 chr11 32433250 32433396 -116350076 + L1ME4a LINE L1 5791 5934 -187 1611 187 58 32 chr11 32433404 32433703 -116349769 - MLT1B LTR MaLR 0 390 77 2321 158 10 2 chr11 32433703 32434103 -116349369 + MER57A LTR ERV1 1 403 0 1611 187 58 32 chr11 32434103 32434183 -116349289 - MLT1B LTR MaLR -313 77 1 1589 194 43 7 chr11 32434212 32434691 -116348781 + AluSq SINE Alu 1 490 0 251 175 18 0 chr11 32434706 32434763 -116348709 + GA-rich Low_complexity Low_complexity 4 61 0 257 355 28 0 chr11 32435026 32435133 -116348339 + MIR SINE MIR 97 206 -56 216 0 0 0 chr11 32435167 32435191 -116348281 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1093 74 0 0 chr11 32435191 32435319 -116348153 - AluYb8 SINE Alu -187 131 1 2369 66 3 7 chr11 32435328 32435630 -116347842 - AluY SINE Alu -10 301 1 2219 94 0 10 chr11 32435653 32435952 -116347520 - AluSg SINE Alu -14 296 1 300 299 47 0 chr11 32436389 32436496 -116346976 + MLT1K LTR MaLR 135 246 -342 494 287 0 0 chr11 32436575 32436697 -116346775 + MER94 DNA DNA 13 134 0 247 306 102 6 chr11 32436741 32436898 -116346574 + MLT1K LTR MaLR 363 534 -54 2526 137 44 0 chr11 32437436 32437846 -116345626 - MSTA LTR MaLR 0 428 1 3105 194 62 67 chr11 32438186 32439258 -116344214 - L1MC4 LINE L1 0 8042 6976 414 283 49 54 chr11 32440118 32440302 -116343170 + MIR3 SINE MIR 19 201 -7 257 402 57 33 chr11 32440778 32441233 -116342239 + L2 LINE L2 2047 2512 -802 373 224 0 0 chr11 32441360 32441445 -116342027 + MIR SINE MIR 169 253 -9 275 275 55 83 chr11 32441606 32441824 -116341648 - MLT1J2 LTR MaLR -205 245 34 2262 58 0 7 chr11 32442108 32442385 -116341087 - AluSg SINE Alu -35 275 1 25 0 0 0 chr11 32442385 32442410 -116341062 + AT_rich Low_complexity Low_complexity 1 25 0 207 146 0 0 chr11 32442562 32442603 -116340869 + (CA)n Simple_repeat Simple_repeat 2 42 0 271 238 9 9 chr11 32442690 32442795 -116340677 + CT-rich Low_complexity Low_complexity 4 108 0 2037 117 0 31 chr11 32444140 32444482 -116338990 - AluSg SINE Alu 0 335 3 341 230 128 128 chr11 32444584 32444771 -116338701 - MIR SINE MIR -22 240 54 963 199 5 5 chr11 32444775 32444971 -116338501 + MER6B DNA MER2_type 12 207 -3 630 259 109 23 chr11 32445404 32445624 -116337848 + L2 LINE L2 3075 3313 0 402 259 29 65 chr11 32445806 32445945 -116337527 - MIR SINE MIR -109 153 20 294 280 11 0 chr11 32447005 32447098 -116336374 + L1ME4a LINE L1 5959 6052 -69 1828 249 63 28 chr11 32447456 32448059 -116335413 + MLT1E3 LTR MaLR 1 624 0 343 267 23 61 chr11 32448260 32448391 -116335081 - MIR SINE MIR 0 262 137 432 206 0 22 chr11 32448452 32448544 -116334928 + MER21B LTR ERV1 1 90 -773 2924 234 74 8 chr11 32448566 32449335 -116334137 + MER21B LTR ERV1 19 838 -25 1260 162 26 0 chr11 32449993 32450258 -116333214 - MER33 DNA MER1_type 0 324 53 6997 65 5 3 chr11 32450287 32452111 -116331361 - L1PA8 LINE L1 -10 6162 4339 404 188 47 0 chr11 32452243 32452328 -116331144 + MER106B DNA MER1_type 896 984 -75 301 136 0 17 chr11 32452330 32452389 -116331083 - MLT2D LTR ERVL -2 518 461 256 171 13 40 chr11 32452476 32452552 -116330920 - MER106B DNA MER1_type -81 978 905 594 198 21 37 chr11 32452655 32452813 -116330659 + MER33 DNA MER1_type 1 147 -101 1022 224 34 81 chr11 32452831 32453214 -116330258 - MLT2D LTR ERVL -49 365 1 727 153 127 21 chr11 32453418 32453607 -116329865 - MER3 DNA MER1_type 0 209 1 837 283 5 14 chr11 32453623 32453842 -116329630 + MIR SINE MIR 46 262 0 433 256 62 80 chr11 32455382 32455558 -116327914 + MIR3 SINE MIR 36 208 0 583 58 35 0 chr11 32457481 32457568 -116325904 + (TTCC)n Simple_repeat Simple_repeat 4 93 0 930 164 7 7 chr11 32457952 32458098 -116325374 + FRAM SINE Alu 1 146 -30 543 107 0 0 chr11 32458099 32458183 -116325289 + (TC)n Simple_repeat Simple_repeat 2 85 0 21 36 0 0 chr11 32458183 32458211 -116325261 + AT_rich Low_complexity Low_complexity 1 28 0 2301 90 0 0 chr11 32458325 32458613 -116324859 - AluY SINE Alu -21 290 3 276 149 0 0 chr11 32459700 32459747 -116323725 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 189 352 42 0 chr11 32460975 32461046 -116322426 + MIR SINE MIR 23 96 -166 210 220 34 17 chr11 32461140 32461199 -116322273 + CT-rich Low_complexity Low_complexity 5 64 0 244 260 82 0 chr11 32461640 32461713 -116321759 - MIR SINE MIR -94 114 36 287 307 0 0 chr11 32462348 32462423 -116321049 + L2 LINE L2 3188 3262 -10 744 12 0 0 chr11 32462743 32462828 -116320644 + (GGAAA)n Simple_repeat Simple_repeat 1 85 0 267 157 0 0 chr11 32462828 32462879 -116320593 + GA-rich Low_complexity Low_complexity 2 52 0 311 43 0 22 chr11 32462888 32462934 -116320538 + (GGAA)n Simple_repeat Simple_repeat 4 48 0 258 224 13 79 chr11 32463136 32463212 -116320260 - MIR SINE MIR -109 153 83 880 322 0 4 chr11 32463853 32464089 -116319383 - MIR SINE MIR -23 239 5 207 390 149 4 chr11 32464532 32464760 -116318712 + L3 LINE CR1 1263 1523 -54 255 186 0 0 chr11 32464812 32464855 -116318617 + L2 LINE L2 2602 2644 -670 339 136 0 0 chr11 32464883 32464942 -116318530 + (CA)n Simple_repeat Simple_repeat 1 59 0 255 333 0 0 chr11 32465584 32465653 -116317819 + L2 LINE L2 3202 3270 -2 21 36 0 0 chr11 32465721 32465749 -116317723 + AT_rich Low_complexity Low_complexity 1 28 0 1820 211 66 23 chr11 32466619 32467131 -116316341 + MLT1F LTR MaLR 1 534 -8 488 248 41 8 chr11 32467460 32467581 -116315891 - MIR SINE MIR -37 225 101 787 226 68 9 chr11 32467581 32467802 -116315670 - MLT1K LTR MaLR -120 468 235 407 292 23 41 chr11 32467846 32468017 -116315455 - MLT1K LTR MaLR -419 169 2 376 272 11 0 chr11 32468180 32468272 -116315200 - MER63C DNA MER1_type 0 931 839 555 134 0 12 chr11 32468294 32468376 -116315096 + AluJ/FLAM SINE Alu 21 101 -211 1865 187 112 24 chr11 32468380 32468882 -116314590 - MER63C DNA MER1_type -374 556 11 369 298 32 8 chr11 32468926 32469050 -116314422 - L2 LINE L2 -527 2787 2661 205 341 12 12 chr11 32469118 32469203 -116314269 - MIR SINE MIR -29 233 149 2428 269 61 30 chr11 32471945 32473111 -116310361 + L2 LINE L2 2122 3313 0 304 268 54 83 chr11 32473628 32473796 -116309676 + MER117 DNA MER1_type 1 163 -34 232 383 22 26 chr11 32473993 32474262 -116309210 - L2 LINE L2 -436 2878 2611 371 308 107 13 chr11 32474676 32474910 -116308562 - MER102a DNA MER1_type -1 329 74 459 242 137 20 chr11 32475140 32475293 -116308179 - MIR SINE MIR -3 259 89 446 217 69 3 chr11 32475913 32476102 -116307370 - MIR SINE MIR -4 258 2 395 37 0 19 chr11 32477016 32477070 -116306402 + (TC)n Simple_repeat Simple_repeat 2 54 0 408 247 63 84 chr11 32478570 32478809 -116304663 + MER106A DNA MER1_type 1 234 -2 326 240 0 19 chr11 32478825 32478929 -116304543 - L1ME LINE L1 -344 5801 5700 6240 200 23 24 chr11 32478940 32481908 -116301564 + L1MC1 LINE L1 3366 6329 -4 484 283 119 21 chr11 32481905 32482326 -116301146 - L1ME LINE L1 -443 5702 5241 * 419 263 111 31 chr11 32482378 32482534 -116300938 - L1ME LINE L1 -2912 3217 3075 1639 94 0 5 chr11 32482534 32482757 -116300715 - AluY SINE Alu -9 302 81 419 263 111 31 chr11 32482757 32483435 -116300037 - L1ME LINE L1 -3054 3075 2286 722 243 61 12 chr11 32483441 32483688 -116299784 - LTR33A LTR ERVL -1 522 264 779 139 22 7 chr11 32483856 32483993 -116299479 - L1MC4 LINE L1 -1061 6981 6843 714 89 0 10 chr11 32484123 32484224 -116299248 - AluY SINE Alu -7 304 205 300 248 19 9 chr11 32484228 32484333 -116299139 - L1ME LINE L1 -3872 2257 2152 362 291 46 62 chr11 32484335 32484584 -116298888 - L1MEc LINE L1 -3980 2159 1944 230 230 27 0 chr11 32484648 32484722 -116298750 + CT-rich Low_complexity Low_complexity 1 76 0 716 211 67 5 chr11 32485254 32485448 -116298024 + L1MC4 LINE L1 6853 7058 -984 1845 182 0 0 chr11 32485459 32485788 -116297684 - MER47A DNA MER2_type 0 366 38 1575 229 165 21 chr11 32485822 32486403 -116297069 + L1MC4 LINE L1 7238 7902 -140 21 36 0 0 chr11 32486441 32486469 -116297003 + AT_rich Low_complexity Low_complexity 1 28 0 359 293 34 13 chr11 32486771 32487010 -116296462 - L1MEc LINE L1 -4727 1583 1340 454 209 37 70 chr11 32487035 32487222 -116296250 - L1MEc LINE L1 -4885 1234 1054 655 328 34 32 chr11 32487240 32487676 -116295796 - L1MEc LINE L1 -5260 859 423 2397 154 42 2 chr11 32487849 32488259 -116295213 - MSTB LTR MaLR 0 426 1 9238 172 17 11 chr11 32488259 32489900 -116293572 - MSTB-int LTR MaLR 0 1651 1 2287 145 27 63 chr11 32489900 32490342 -116293130 - MSTB LTR MaLR 0 426 1 2179 141 14 3 chr11 32490900 32491269 -116292203 + MER34B LTR ERV1 1 373 -192 1203 181 37 15 chr11 32491335 32491644 -116291828 + LTR10B LTR ERV1 215 547 0 1022 144 16 5 chr11 32491644 32491838 -116291634 + MER34B LTR ERV1 369 564 -1 255 320 78 19 chr11 32491927 32492030 -116291442 + MIR SINE MIR 19 127 -81 243 292 183 8 chr11 32492414 32492534 -116290938 + MIR SINE MIR 120 260 -2 460 318 167 5 chr11 32493822 32494020 -116289452 - MIR SINE MIR -18 244 15 241 207 52 0 chr11 32494269 32494327 -116289145 + L2 LINE L2 2685 2745 -569 237 305 6 166 chr11 32494676 32495007 -116288465 + L2 LINE L2 2995 3272 0 3879 127 28 16 chr11 32495395 32496040 -116287432 - MER39B LTR ERV1 0 653 1 787 271 62 4 chr11 32496599 32496843 -116286629 - MIR SINE MIR 0 262 5 448 284 13 124 chr11 32497383 32497608 -116285864 - L2 LINE L2 -39 3233 3034 570 164 17 0 chr11 32497800 32497916 -116285556 - MER31A LTR ERV1 0 485 368 910 121 42 77 chr11 32497927 32498133 -116285339 - LTR48 LTR ERV1 0 787 437 1332 199 130 19 chr11 32498133 32498564 -116284908 - LTR48 LTR ERV1 -303 484 6 1218 180 31 96 chr11 32498570 32498828 -116284644 - MER31B LTR ERV1 -107 359 133 2419 70 0 3 chr11 32498828 32499129 -116284343 - AluY SINE Alu -11 300 1 1218 180 31 96 chr11 32499129 32499254 -116284218 - MER31B LTR ERV1 -333 133 1 1017 223 59 13 chr11 32499370 32499699 -116283773 + MSTD LTR MaLR 1 396 0 316 330 10 10 chr11 32500558 32500661 -116282811 - L2 LINE L2 -9 3304 3202 854 152 0 0 chr11 32500884 32501016 -116282456 - FLAM_C SINE Alu -1 132 1 791 274 47 8 chr11 32501752 32501986 -116281486 + MIR SINE MIR 3 245 -17 200 122 0 24 chr11 32502000 32502041 -116281431 + (TTA)n Simple_repeat Simple_repeat 2 41 0 751 323 101 30 chr11 32502073 32502540 -116280932 + L3 LINE CR1 1074 1573 -4 331 277 79 20 chr11 32502657 32502758 -116280714 - MER91A DNA MER1_type -1 195 89 312 309 195 41 chr11 32502758 32502881 -116280591 - MER91A DNA MER1_type -23 173 32 231 97 0 0 chr11 32503550 32503581 -116279891 + LTR67 LTR ERVL 519 549 -8 737 254 108 26 chr11 32503751 32503983 -116279489 - MIR SINE MIR -11 251 1 180 0 0 0 chr11 32506399 32506419 -116277053 + (A)n Simple_repeat Simple_repeat 1 20 0 245 255 0 0 chr11 32506558 32506609 -116276863 + L2 LINE L2 3263 3313 0 386 230 169 27 chr11 32506660 32506808 -116276664 + MIR SINE MIR 65 233 -29 1443 150 16 0 chr11 32506889 32507142 -116276330 + MER34C LTR ERV1 329 585 0 195 337 0 51 chr11 32507192 32507290 -116276182 - MIR SINE MIR -50 212 120 334 270 0 0 chr11 32507347 32507421 -116276051 - L2 LINE L2 -8 3305 3232 2250 109 0 0 chr11 32508363 32508657 -116274815 + AluSx SINE Alu 1 294 -18 219 231 46 15 chr11 32509185 32509250 -116274222 - L2 LINE L2 -74 3239 3173 29 0 0 0 chr11 32509469 32509498 -116273974 + AT_rich Low_complexity Low_complexity 1 29 0 272 265 0 15 chr11 32509877 32509945 -116273527 + (CATATA)n Simple_repeat Simple_repeat 3 69 0 2588 151 15 24 chr11 32510447 32510730 -116272742 + MLT1C LTR MaLR 1 280 -187 2071 170 0 37 chr11 32510730 32511107 -116272365 - MLT1A1 LTR MaLR -2 363 1 2588 151 15 24 chr11 32511107 32511279 -116272193 + MLT1C LTR MaLR 280 452 -15 754 206 138 82 chr11 32511279 32511570 -116271902 + MLT1A1 LTR MaLR 1 307 -58 660 296 25 53 chr11 32511777 32512020 -116271452 + MIR SINE MIR 20 255 -7 194 325 266 7 chr11 32512362 32512516 -116270956 - MIR3 SINE MIR 0 208 15 2455 94 0 0 chr11 32512761 32513069 -116270403 - AluSx SINE Alu -4 308 1 485 353 53 56 chr11 32513964 32514566 -116268906 - L2 LINE L2 -3 3269 2584 219 88 0 0 chr11 32516070 32516104 -116267368 + (TCTA)n Simple_repeat Simple_repeat 2 35 0 411 211 0 0 chr11 32516386 32516476 -116266996 + (TA)n Simple_repeat Simple_repeat 2 91 0 1217 177 28 11 chr11 32516805 32517087 -116266385 + MER33 DNA MER1_type 35 321 -3 332 297 57 92 chr11 32517087 32517491 -116265981 + L2 LINE L2 2877 3266 -47 229 154 0 31 chr11 32517509 32517574 -116265898 + (TA)n Simple_repeat Simple_repeat 1 63 0 417 66 0 0 chr11 32517582 32517643 -116265829 + (TC)n Simple_repeat Simple_repeat 2 62 0 294 183 0 0 chr11 32517812 32517883 -116265589 + (TA)n Simple_repeat Simple_repeat 2 72 0 207 0 0 0 chr11 32517883 32517906 -116265566 + (GA)n Simple_repeat Simple_repeat 2 24 0 399 250 73 44 chr11 32518758 32518894 -116264578 + MER5A DNA MER1_type 47 186 -3 1937 161 0 3 chr11 32522690 32522982 -116260490 + AluJb SINE Alu 2 292 -20 185 269 269 8 chr11 32526199 32526318 -116257154 + MIR3 SINE MIR 58 207 -1 682 75 0 0 chr11 32526967 32527060 -116256412 - L1PA6 LINE L1 -6 6148 6056 238 350 98 21 chr11 32527520 32527714 -116255758 - MIR SINE MIR 0 262 54 312 333 10 43 chr11 32528111 32528318 -116255154 + HAL1b LINE L1 391 590 -758 1943 160 10 10 chr11 32528542 32528849 -116254623 - AluJb SINE Alu -5 307 1 311 312 46 93 chr11 32528868 32529526 -116253946 + L1ME4a LINE L1 4080 4706 -1440 23 33 0 0 chr11 32529548 32529578 -116253894 + AT_rich Low_complexity Low_complexity 1 30 0 1014 264 105 19 chr11 32530227 32530769 -116252703 + L1ME4a LINE L1 5507 6095 -26 1456 212 73 28 chr11 32530912 32531266 -116252206 - MLT1A2 LTR MaLR -4 370 1 23 0 0 0 chr11 32531480 32531503 -116251969 + AT_rich Low_complexity Low_complexity 1 23 0 1838 146 25 0 chr11 32532246 32532520 -116250952 + AluSq SINE Alu 1 281 -32 1182 57 23 11 chr11 32532521 32532696 -116250776 + (GAAA)n Simple_repeat Simple_repeat 2 178 0 2284 79 4 0 chr11 32532954 32533233 -116250239 + AluSp SINE Alu 1 280 -33 188 83 0 28 chr11 32533235 32533271 -116250201 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 1550 178 40 74 chr11 32534355 32534759 -116248713 + MLT1B LTR MaLR 1 390 0 286 230 230 18 chr11 32535541 32535654 -116247818 - L1ME LINE L1 -525 5596 5460 408 123 0 0 chr11 32536945 32537002 -116246470 + Alu SINE Alu 237 293 -19 505 251 97 40 chr11 32537130 32537305 -116246167 - MIR SINE MIR -32 230 46 271 313 73 104 chr11 32539688 32539947 -116243525 - L2 LINE L2 -5 3267 3017 243 307 89 0 chr11 32541253 32541354 -116242118 - MIR SINE MIR -7 255 146 302 184 0 0 chr11 32541400 32541449 -116242023 + L2 LINE L2 3213 3261 -11 2387 67 20 3 chr11 32541825 32542124 -116241348 + AluY SINE Alu 1 304 -7 811 338 76 47 chr11 32542332 32543176 -116240296 - L2 LINE L2 -114 3158 2295 201 108 0 0 chr11 32543633 32543670 -116239802 + (A)n Simple_repeat Simple_repeat 1 37 0 539 289 118 48 chr11 32545764 32545992 -116237480 - MIR SINE MIR -6 256 13 348 260 24 16 chr11 32546562 32546617 -116236855 + (TA)n Simple_repeat Simple_repeat 2 55 -74 1342 220 30 48 chr11 32546617 32546989 -116236483 + MLT1A1 LTR MaLR 1 365 0 348 260 24 16 chr11 32546989 32547060 -116236412 + (TA)n Simple_repeat Simple_repeat 55 129 0 659 288 0 7 chr11 32547145 32547291 -116236181 - MIR SINE MIR -114 148 4 214 358 25 0 chr11 32547381 32547462 -116236010 - L2 LINE L2 -83 3189 3107 234 270 111 32 chr11 32548568 32548694 -116234778 - MIR SINE MIR -50 212 77 21 0 0 0 chr11 32548765 32548786 -116234686 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 32549684 32549705 -116233767 + AT_rich Low_complexity Low_complexity 1 21 0 216 274 32 53 chr11 32549812 32549907 -116233565 + MIR SINE MIR 5 97 -165 581 199 40 189 chr11 32551484 32551838 -116231634 + L1MC4a LINE L1 6734 6994 -967 1014 219 64 101 chr11 32551838 32552404 -116231068 + MLT1H LTR MaLR 1 545 -4 581 199 40 189 chr11 32552404 32552568 -116230904 + L1MC4a LINE L1 6994 7181 -780 302 323 55 18 chr11 32552718 32552882 -116230590 + L1MC5 LINE L1 7276 7445 -516 362 224 68 59 chr11 32552914 32553133 -116230339 + L1MC5 LINE L1 7548 7768 -193 353 251 71 33 chr11 32553726 32553909 -116229563 - L1ME4a LINE L1 -84 6037 5848 406 312 90 17 chr11 32554015 32554316 -116229156 - L1ME4a LINE L1 -430 5691 5369 270 341 14 58 chr11 32555523 32555661 -116227811 + L2 LINE L2 3136 3267 -5 670 205 99 29 chr11 32555997 32556168 -116227304 + LTR41 LTR ERVL 1 183 -590 2199 128 59 47 chr11 32556422 32556798 -116226674 + MSTC LTR MaLR 1 384 -44 2125 122 13 10 chr11 32556798 32557101 -116226371 - AluSx SINE Alu -8 304 1 2199 128 59 47 chr11 32557101 32557147 -116226325 + MSTC LTR MaLR 384 428 0 2255 49 59 3 chr11 32557658 32557946 -116225526 + AluY SINE Alu 1 304 -7 357 212 150 44 chr11 32558519 32558632 -116224840 + L2 LINE L2 3189 3313 0 189 0 0 0 chr11 32559151 32559172 -116224300 + (A)n Simple_repeat Simple_repeat 1 21 0 384 260 45 48 chr11 32559281 32559550 -116223922 - L1MC5 LINE L1 -179 7782 7515 228 343 0 0 chr11 32560802 32560869 -116222603 - L2 LINE L2 0 3272 3206 893 316 61 25 chr11 32562898 32563293 -116220179 - L2 LINE L2 -79 3234 2826 344 286 244 35 chr11 32563629 32563940 -116219532 + L3 LINE CR1 1167 1542 -35 21 0 0 0 chr11 32565595 32565616 -116217856 + AT_rich Low_complexity Low_complexity 1 21 0 472 204 107 92 chr11 32567180 32567376 -116216096 + L1MD2 LINE L1 5684 5882 -477 22 56 0 0 chr11 32567424 32567460 -116216012 + AT_rich Low_complexity Low_complexity 1 36 0 459 216 0 0 chr11 32567472 32567588 -116215884 + GA-rich Low_complexity Low_complexity 3 118 0 962 247 23 5 chr11 32567612 32567831 -116215641 + MER58A DNA MER1_type 2 224 0 304 247 14 82 chr11 32567854 32568000 -116215472 + L1ME4a LINE L1 5986 6121 0 33 0 0 0 chr11 32568119 32568152 -116215320 + AT_rich Low_complexity Low_complexity 1 33 0 1869 139 11 4 chr11 32568152 32568433 -116215039 - AluSx SINE Alu -27 285 3 214 291 10 97 chr11 32569276 32569309 -116214163 + MIR SINE MIR 167 201 -61 1972 145 3 3 chr11 32569309 32569606 -116213866 + AluSx SINE Alu 1 297 -15 214 291 10 97 chr11 32569606 32569675 -116213797 + MIR SINE MIR 201 260 -2 278 222 256 40 chr11 32570044 32570220 -116213252 + MIR SINE MIR 15 228 -34 209 379 0 0 chr11 32570691 32570757 -116212715 - L2 LINE L2 -220 3052 2987 716 200 0 8 chr11 32571333 32571458 -116212014 + FLAM_C SINE Alu 1 124 -9 303 175 0 0 chr11 32571890 32571947 -116211525 + A-rich Low_complexity Low_complexity 1 57 0 375 353 14 7 chr11 32572016 32572155 -116211317 - MIR3 SINE MIR -68 140 1 2410 155 36 7 chr11 32572503 32572923 -116210549 + MSTB1 LTR MaLR 1 432 0 239 234 75 43 chr11 32574721 32574815 -116208657 - MER91C DNA MER1_type -22 118 22 208 208 0 21 chr11 32576568 32576616 -116206856 - L2 LINE L2 -2 3311 3265 222 343 49 20 chr11 32577009 32577111 -116206361 - L2 LINE L2 0 3313 3209 201 355 13 32 chr11 32577318 32577473 -116205999 - L2 LINE L2 -802 2512 2361 616 280 79 16 chr11 32577833 32578211 -116205261 - L1M4 LINE L1 -2134 4012 3611 1657 316 43 50 chr11 32578290 32579443 -116204029 - HERVI LTR ERV1 -216 6433 5289 2243 106 3 10 chr11 32580059 32580370 -116203102 - AluSg SINE Alu -1 309 1 1134 331 10 8 chr11 32580476 32580968 -116202504 - HERVI LTR ERV1 -2029 5756 5264 2029 109 26 10 chr11 32581019 32581332 -116202140 + LTR19C LTR ERV1 98 415 -364 602 296 80 46 chr11 32581602 32582260 -116201212 - HERVI LTR ERV1 -4558 2091 1624 323 315 0 37 chr11 32582614 32582776 -116200696 + CT-rich Low_complexity Low_complexity 2 157 0 520 62 0 25 chr11 32582792 32582872 -116200600 - LTR18B LTR ERVL -269 345 268 455 133 0 13 chr11 32582918 32582993 -116200479 - LTR18B LTR ERVL -209 405 332 565 343 8 4 chr11 32583060 32583299 -116200173 - HERVI LTR ERV1 -6768 1017 778 755 275 97 34 chr11 32584373 32584634 -116198838 - L1M4 LINE L1 -2587 3559 3316 3310 121 6 22 chr11 32584634 32585139 -116198333 + LOR1a LTR ERV1 1 497 0 755 275 97 34 chr11 32585139 32585586 -116197886 - L1M4 LINE L1 -2830 3316 2806 1228 284 95 5 chr11 32585631 32586103 -116197369 + L2 LINE L2 2534 3070 -243 215 359 76 0 chr11 32588800 32588892 -116194580 + L2 LINE L2 3197 3295 -18 2433 91 0 0 chr11 32589478 32589785 -116193687 - AluSg SINE Alu -3 307 1 2036 136 3 0 chr11 32589930 32590216 -116193256 + AluSq SINE Alu 1 287 -26 603 40 0 0 chr11 32590216 32590290 -116193182 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 418 249 24 30 chr11 32591634 32591803 -116191669 + L1MEd LINE L1 1387 1554 -4976 * 5544 155 17 22 chr11 32591798 32592417 -116191055 + L1MA4 LINE L1 4698 5319 -981 9577 86 1 0 chr11 32592417 32594531 -116188941 + L1PA7 LINE L1 4041 6150 -4 5544 155 17 22 chr11 32594531 32595526 -116187946 + L1MA4 LINE L1 5319 6291 -9 22 0 0 0 chr11 32595526 32595548 -116187924 + AT_rich Low_complexity Low_complexity 1 22 0 582 256 103 34 chr11 32595550 32596016 -116187456 + L1MEd LINE L1 1544 2102 -4549 385 336 78 37 chr11 32596247 32596518 -116186954 + L1MEd LINE L1 2403 2684 -4037 742 250 105 16 chr11 32596525 32596829 -116186643 + L1MEd LINE L1 2643 2973 -3567 23 0 0 0 chr11 32597258 32597281 -116186191 + AT_rich Low_complexity Low_complexity 1 23 0 216 58 47 70 chr11 32597751 32597837 -116185635 + (TTATA)n Simple_repeat Simple_repeat 5 88 0 27 0 0 0 chr11 32598053 32598080 -116185392 + AT_rich Low_complexity Low_complexity 1 27 0 835 179 12 18 chr11 32598184 32598352 -116185120 + L1M4 LINE L1 5576 5742 -432 2546 48 0 13 chr11 32598521 32598833 -116184639 - AluY SINE Alu -3 308 1 1561 313 63 36 chr11 32599631 32600482 -116182990 + L2 LINE L2 360 1233 -2081 607 278 113 10 chr11 32600491 32600685 -116182787 + MER20B DNA MER1_type 15 228 -555 752 165 0 16 chr11 32600727 32600854 -116182618 - FLAM_C SINE Alu -18 125 1 1244 235 81 24 chr11 32600863 32601319 -116182153 + MER20B DNA MER1_type 301 782 -1 1654 278 122 11 chr11 32601321 32602025 -116181447 + L2 LINE L2 1215 1996 -1318 578 300 51 51 chr11 32602025 32602378 -116181094 + MERVL LTR ERVL 3141 3493 -1992 1122 329 37 12 chr11 32602387 32602873 -116180599 + MERVL LTR ERVL 3595 4092 -1672 682 343 70 11 chr11 32602885 32603343 -116180129 + MERVL LTR ERVL 4432 4916 -569 22 0 0 0 chr11 32605342 32605364 -116178108 + AT_rich Low_complexity Low_complexity 1 22 0 27 62 0 0 chr11 32606602 32606650 -116176822 + AT_rich Low_complexity Low_complexity 1 48 0 824 291 107 13 chr11 32607893 32608202 -116175270 + MLT1J LTR MaLR 4 341 -170 8785 16 0 0 chr11 32610123 32611910 -116171562 - L1HS LINE L1 -4 6151 4365 1200 21 0 0 chr11 32611903 32612047 -116171425 + L1HS LINE L1 4218 4361 -1785 * 223 323 46 0 chr11 32612799 32612864 -116170608 + L2 LINE L2 3246 3313 0 1089 185 24 58 chr11 32612880 32613172 -116170300 + MER44D DNA MER2_type 1 552 -57 197 68 40 54 chr11 32613172 32613246 -116170226 + (TA)n Simple_repeat Simple_repeat 2 74 0 384 164 0 0 chr11 32613246 32613307 -116170165 + MER44D DNA MER2_type 519 579 -26 1602 215 98 44 chr11 32613633 32614112 -116169360 + MLT1D LTR MaLR 1 505 0 7341 173 61 52 chr11 32614412 32616118 -116167354 + L1MA4A LINE L1 13 2049 -4799 2531 74 0 0 chr11 32616118 32616427 -116167045 - AluY SINE Alu -2 309 1 7341 173 61 52 chr11 32616427 32617318 -116166154 + L1MA4A LINE L1 2049 2931 -3917 2184 143 35 22 chr11 32617318 32617508 -116165964 + MSTA LTR MaLR 1 187 -241 2041 139 0 7 chr11 32617508 32617809 -116165663 + AluSx SINE Alu 1 299 -13 2184 143 35 22 chr11 32617809 32617988 -116165484 + MSTA LTR MaLR 187 375 -53 14295 162 33 10 chr11 32618015 32621991 -116161481 + L1MA4A LINE L1 2930 6999 -6 354 258 31 127 chr11 32622006 32622166 -116161306 - L1ME LINE L1 -338 5783 5656 1717 165 7 7 chr11 32622166 32622457 -116161015 + AluJb SINE Alu 1 291 -21 354 258 31 127 chr11 32622457 32622556 -116160916 - L1ME LINE L1 -465 5656 5549 393 393 0 0 chr11 32622830 32622947 -116160525 + L2 LINE L2 3137 3253 -19 2493 119 17 5 chr11 32623002 32623298 -116160174 - L1MA4A LINE L1 -5 6298 5994 432 0 0 0 chr11 32623298 32623346 -116160126 + (CA)n Simple_repeat Simple_repeat 2 49 0 2493 119 17 5 chr11 32623346 32623462 -116160010 - L1MA4A LINE L1 -309 5994 5881 1005 133 75 0 chr11 32623634 32623807 -116159665 + L1M2 LINE L1 2 187 -6662 379 284 63 47 chr11 32624610 32624737 -116158735 + L2 LINE L2 3137 3265 -7 334 303 123 52 chr11 32624779 32624934 -116158538 + MER115 DNA AcHobo 67 232 -461 3193 152 44 5 chr11 32625290 32625862 -116157610 + L1PB4 LINE L1 5559 6152 -4 336 305 11 0 chr11 32625865 32625960 -116157512 + MIR SINE MIR 147 242 -20 29 0 0 0 chr11 32626521 32626550 -116156922 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 32628152 32628173 -116155299 + AT_rich Low_complexity Low_complexity 1 21 0 436 259 0 22 chr11 32629985 32630124 -116153348 - L1ME2 LINE L1 0 6164 6029 774 296 21 39 chr11 32630483 32630763 -116152709 - MLT1J LTR MaLR -6 505 231 2352 104 0 0 chr11 32630841 32631149 -116152323 - AluSc SINE Alu -1 308 1 2068 129 0 0 chr11 32631516 32631833 -116151639 - AluSx SINE Alu 0 319 3 900 322 96 50 chr11 32631881 32632215 -116151257 - L2 LINE L2 -7 3306 2989 1509 128 18 0 chr11 32632215 32632441 -116151031 - MER30 DNA MER1_type 0 230 1 900 322 96 50 chr11 32632441 32633014 -116150458 - L2 LINE L2 -324 2989 2344 242 288 6 110 chr11 32633010 32633129 -116150343 + L2 LINE L2 2824 2923 -391 * 1536 128 18 0 chr11 32633129 32633355 -116150117 + MER30 DNA MER1_type 1 230 0 242 288 6 110 chr11 32633355 32633398 -116150074 + L2 LINE L2 2923 2969 -345 743 316 130 5 chr11 32633426 32633796 -116149676 - L2 LINE L2 -977 2337 1922 240 167 0 0 chr11 32635798 32635846 -116147626 + L1MA9 LINE L1 6227 6274 -38 239 277 96 32 chr11 32636471 32636565 -116146907 - L2 LINE L2 -4 3268 3169 23 33 0 0 chr11 32637547 32637577 -116145895 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr11 32637597 32637619 -116145853 + AT_rich Low_complexity Low_complexity 1 22 0 256 194 60 0 chr11 32637685 32637752 -116145720 + L1MD3 LINE L1 2869 2939 -3207 3099 248 38 13 chr11 32637790 32638823 -116144649 + L1MD3 LINE L1 2933 3991 -2155 1275 167 50 0 chr11 32638827 32639048 -116144424 - AluSx SINE Alu -18 294 63 219 69 0 0 chr11 32639048 32639077 -116144395 + (TA)n Simple_repeat Simple_repeat 2 30 0 216 93 113 7 chr11 32639128 32639279 -116144193 + (TA)n Simple_repeat Simple_repeat 2 168 0 33 0 0 0 chr11 32639282 32639315 -116144157 + AT_rich Low_complexity Low_complexity 1 33 0 6388 212 108 85 chr11 32639321 32640927 -116142545 + L1MD3 LINE L1 4018 5586 -2409 1168 197 12 113 chr11 32640927 32641333 -116142139 + MLT1A1 LTR MaLR 1 365 0 6388 212 108 85 chr11 32641333 32641849 -116141623 + L1MD3 LINE L1 5586 6089 -1906 183 80 0 0 chr11 32641849 32641874 -116141598 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 6388 212 108 85 chr11 32641874 32642323 -116141149 + L1MD3 LINE L1 6089 6526 -1469 249 33 0 0 chr11 32642323 32642353 -116141119 + (TG)n Simple_repeat Simple_repeat 2 31 0 6388 212 108 85 chr11 32642353 32642533 -116140939 + L1MD3 LINE L1 6526 6700 -1295 1799 171 10 3 chr11 32642533 32642825 -116140647 + AluJo SINE Alu 4 297 -15 6388 212 108 85 chr11 32642825 32643243 -116140229 + L1MD3 LINE L1 6700 7107 -888 550 213 82 8 chr11 32643243 32643365 -116140107 + MLT1F1 LTR MaLR 1 131 -436 6388 212 108 85 chr11 32643365 32643950 -116139522 + L1MD3 LINE L1 7107 7982 -13 248 388 61 7 chr11 32644087 32644234 -116139238 + MIR3 SINE MIR 29 183 -25 396 127 38 13 chr11 32645338 32645417 -116138055 - L1MC4 LINE L1 -2 8040 7960 1293 190 25 44 chr11 32645452 32645768 -116137704 - L1MC4 LINE L1 -749 7293 6984 265 226 24 0 chr11 32647592 32647676 -116135796 + (TA)n Simple_repeat Simple_repeat 2 87 0 289 275 62 81 chr11 32648011 32648171 -116135301 - L2 LINE L2 -189 3083 2927 233 324 130 5 chr11 32648416 32648632 -116134840 - L2 LINE L2 -788 2526 2284 662 280 43 26 chr11 32648908 32648927 -116134545 + MIR SINE MIR 8 25 -237 2230 61 3 34 chr11 32648927 32649223 -116134249 + AluY SINE Alu 18 304 -7 662 280 43 26 chr11 32649223 32649453 -116134019 + MIR SINE MIR 25 262 0 234 0 0 0 chr11 32650471 32650497 -116132975 + (A)n Simple_repeat Simple_repeat 1 26 0 336 331 91 31 chr11 32650588 32651005 -116132467 + L2 LINE L2 1863 2304 -1010 810 256 40 18 chr11 32651012 32651235 -116132237 + MIR SINE MIR 29 256 -6 186 298 95 12 chr11 32651560 32651644 -116131828 + MIR3 SINE MIR 115 205 -3 222 309 81 40 chr11 32652028 32652177 -116131295 - L2 LINE L2 -2512 802 648 2225 107 3 0 chr11 32652181 32652481 -116130991 - AluSx SINE Alu -11 301 1 251 352 104 39 chr11 32652510 32652896 -116130576 - L2 LINE L2 -2807 507 97 21 36 0 0 chr11 32653356 32653384 -116130088 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr11 32653735 32653759 -116129713 + AT_rich Low_complexity Low_complexity 1 24 0 510 141 0 24 chr11 32653870 32653955 -116129517 - MLT1E LTR MaLR 0 654 572 315 0 0 0 chr11 32653957 32653992 -116129480 + (TG)n Simple_repeat Simple_repeat 2 36 0 1392 177 244 40 chr11 32653995 32654254 -116129218 - MLT2B1 LTR ERVL -71 449 244 2043 119 71 20 chr11 32654254 32654608 -116128864 - THE1C LTR MaLR -3 372 1 1392 177 244 40 chr11 32654608 32654721 -116128751 - MLT2B1 LTR ERVL -276 244 1 1513 257 86 38 chr11 32654726 32655204 -116128268 - MLT1E LTR MaLR -92 501 1 250 219 153 36 chr11 32655508 32655645 -116127827 + L1ME3A LINE L1 4796 4948 -1198 466 237 136 21 chr11 32655855 32656135 -116127337 + L1ME3A LINE L1 5189 5491 -679 343 331 57 6 chr11 32656152 32656309 -116127163 + L1ME3A LINE L1 5555 5719 -451 2378 117 117 5 chr11 32656391 32656776 -116126696 + MSTA LTR MaLR 1 428 0 1784 179 3 25 chr11 32656834 32657153 -116126319 + AluJb SINE Alu 1 312 0 374 262 68 29 chr11 32657163 32657369 -116126103 + L1ME3A LINE L1 5743 5956 -214 237 245 47 75 chr11 32657867 32657973 -116125499 + L2 LINE L2 3195 3297 -16 425 212 0 0 chr11 32658458 32658543 -116124929 + MLT1F LTR MaLR 1 85 -457 * 598 194 146 6 chr11 32658533 32658698 -116124774 + MLT1F1 LTR MaLR 6 193 -197 273 221 0 0 chr11 32658705 32658773 -116124699 + CT-rich Low_complexity Low_complexity 2 69 0 1362 205 95 15 chr11 32658782 32659119 -116124353 + MLT1F1 LTR MaLR 189 552 -15 2220 73 3 7 chr11 32659464 32659766 -116123706 - AluY SINE Alu -10 301 1 554 277 134 0 chr11 32660560 32660763 -116122709 + MIR SINE MIR 23 259 -3 185 239 11 114 chr11 32661127 32661215 -116122257 - L2 LINE L2 -289 2983 2905 701 186 34 45 chr11 32661219 32661396 -116122076 - MER5B DNA MER1_type -3 175 1 259 199 38 53 chr11 32661563 32661694 -116121778 - Charlie7 DNA MER1_type -70 2542 2414 1598 163 7 33 chr11 32661695 32661996 -116121476 + Tigger2a DNA MER2_type 2 294 -140 26 0 0 0 chr11 32662004 32662030 -116121442 + AT_rich Low_complexity Low_complexity 1 26 0 1644 157 7 43 chr11 32662106 32662411 -116121061 - AluJb SINE Alu -18 294 1 1073 248 41 52 chr11 32662411 32662870 -116120602 - Charlie7 DNA MER1_type -239 2373 1920 196 239 155 63 chr11 32662953 32663095 -116120377 - MIR SINE MIR -10 252 98 377 310 92 35 chr11 32663541 32663770 -116119702 + MIR SINE MIR 13 254 -8 599 314 137 26 chr11 32664129 32664700 -116118772 + L2 LINE L2 2679 3312 -1 33 0 0 0 chr11 32665103 32665136 -116118336 + AT_rich Low_complexity Low_complexity 1 33 0 661 153 9 0 chr11 32665138 32665249 -116118223 - FLAM_C SINE Alu -25 118 7 258 253 71 0 chr11 32665403 32665502 -116117970 + L1MC4a LINE L1 5260 5365 -2443 1296 294 74 28 chr11 32665533 32666246 -116117226 + L1MC4a LINE L1 5427 6172 -1636 1579 225 48 29 chr11 32666630 32667047 -116116425 - MLT1C LTR MaLR -41 464 3 407 19 19 0 chr11 32667162 32667214 -116116258 + (TG)n Simple_repeat Simple_repeat 2 54 0 21 0 0 0 chr11 32668111 32668132 -116115340 + AT_rich Low_complexity Low_complexity 1 21 0 248 299 126 35 chr11 32668495 32668669 -116114803 + L1MC/D LINE L1 5579 5768 -2040 243 343 14 0 chr11 32668822 32668895 -116114577 - L2 LINE L2 0 3272 3199 684 283 78 22 chr11 32669048 32669458 -116114014 - L1ME4a LINE L1 0 6121 5689 215 213 51 47 chr11 32670278 32670365 -116113107 - MIR SINE MIR -63 199 45 22 0 0 0 chr11 32674046 32674068 -116109404 + AT_rich Low_complexity Low_complexity 1 22 0 250 129 43 43 chr11 32677785 32677855 -116105617 - L1MC4 LINE L1 -1337 6705 6636 617 200 12 19 chr11 32677916 32678076 -116105396 - L1MD3 LINE L1 -842 7153 6995 489 221 10 19 chr11 32678180 32678284 -116105188 + Tigger3(Golem) DNA MER2_type 2 104 -2925 * 4167 128 54 10 chr11 32678279 32678377 -116105095 + Tigger3(Golem) DNA MER2_type 2277 2369 -659 2167 109 3 13 chr11 32678377 32678679 -116104793 + AluSx SINE Alu 1 299 -13 4167 128 54 10 chr11 32678679 32679300 -116104172 + Tigger3(Golem) DNA MER2_type 2369 3028 0 3717 215 70 15 chr11 32679642 32680595 -116102877 - L1MC4a LINE L1 0 7808 6803 227 335 58 40 chr11 32680746 32680919 -116102553 - L3b LINE CR1 -235 1348 1173 376 176 149 0 chr11 32681134 32681208 -116102264 + MER2 DNA MER2_type 1 85 -260 671 293 86 9 chr11 32681367 32681599 -116101873 - MIR SINE MIR -11 251 2 2081 53 24 95 chr11 32681943 32682281 -116101191 - AluYb8 SINE Alu -4 314 1 793 61 2 0 chr11 32682452 32682558 -116100914 - L1PA5 LINE L1 -209 5946 5852 1384 44 39 0 chr11 32682558 32682736 -116100736 + L1PA5 LINE L1 5956 6142 -12 25 65 0 0 chr11 32683605 32683651 -116099821 + AT_rich Low_complexity Low_complexity 1 46 0 365 294 88 25 chr11 32683883 32684043 -116099429 + MIR SINE MIR 3 172 -90 265 264 0 0 chr11 32684321 32684374 -116099098 + MIR SINE MIR 205 257 -5 408 236 201 0 chr11 32684833 32684977 -116098495 - MER5A DNA MER1_type 0 189 17 304 227 92 126 chr11 32685597 32685835 -116097637 - L2 LINE L2 0 3313 3084 727 265 85 18 chr11 32685931 32686154 -116097318 - MIR SINE MIR -23 239 2 276 263 286 6 chr11 32686154 32686318 -116097154 - MIR SINE MIR -37 225 13 234 273 0 18 chr11 32686709 32686764 -116096708 + MIR SINE MIR 74 127 -81 399 337 25 6 chr11 32687231 32687394 -116096078 + MLT1K LTR MaLR 1 166 -422 1617 162 114 3 chr11 32687445 32687753 -116095719 - MER7A DNA MER2_type 0 346 7 207 148 0 37 chr11 32688300 32688354 -116095118 + (TTTTG)n Simple_repeat Simple_repeat 4 55 0 1953 227 54 62 chr11 32688479 32688714 -116094758 + MLT1E2 LTR MaLR 1 236 -390 2425 66 0 3 chr11 32688714 32689017 -116094455 + AluY SINE Alu 1 302 -9 1953 227 54 62 chr11 32689017 32689412 -116094060 + MLT1E2 LTR MaLR 236 626 0 195 129 0 0 chr11 32689895 32689926 -116093546 + (T)n Simple_repeat Simple_repeat 1 31 0 1865 210 147 12 chr11 32690338 32690834 -116092638 - L1MD2 LINE L1 0 6359 5797 433 319 147 5 chr11 32692499 32692690 -116090782 - MIR SINE MIR -12 250 33 2234 81 0 14 chr11 32693090 32693385 -116090087 + AluY SINE Alu 1 291 -20 220 360 0 12 chr11 32693884 32693970 -116089502 + L2 LINE L2 3229 3313 0 15054 195 35 11 chr11 32694015 32700522 -116082950 + L1PB1 LINE L1 6 6861 -6 1352 248 77 97 chr11 32700601 32701468 -116082004 + L1MEc LINE L1 1973 2761 -3454 1883 156 3 10 chr11 32701468 32701769 -116081703 + AluSx SINE Alu 1 299 -13 1352 248 77 97 chr11 32701769 32702112 -116081360 + L1MEc LINE L1 2761 3110 -3105 374 243 9 93 chr11 32702501 32702608 -116080864 + L2 LINE L2 3160 3257 -15 745 278 122 17 chr11 32702825 32703315 -116080157 - L2 LINE L2 -1 3312 2621 31 0 0 0 chr11 32707169 32707200 -116076272 + AT_rich Low_complexity Low_complexity 1 31 0 1857 63 0 0 chr11 32707317 32707554 -116075918 - L1PA3 LINE L1 -3 6152 5916 3978 34 0 0 chr11 32707554 32708029 -116075443 + L1P2 LINE L1 5327 5801 -354 768 173 0 0 chr11 32708115 32708242 -116075230 + FLAM_C SINE Alu 1 127 -16 21 36 0 0 chr11 32708242 32708270 -116075202 + AT_rich Low_complexity Low_complexity 1 28 0 189 292 14 14 chr11 32709946 32710018 -116073454 - MIR SINE MIR 0 262 191 508 223 19 11 chr11 32710802 32710921 -116072551 - MIR SINE MIR -63 145 71 2131 142 51 3 chr11 32711184 32711558 -116071914 + L1MC1 LINE L1 5936 6327 -6 2584 211 76 9 chr11 32711577 32712558 -116070914 + L1MB8 LINE L1 5102 6172 -6 706 116 0 39 chr11 32712736 32712865 -116070607 - L1MA4 LINE L1 0 6300 6177 2446 68 0 0 chr11 32713374 32713669 -116069803 - AluY SINE Alu -16 295 1 342 189 105 53 chr11 32715041 32715136 -116068336 + MIR SINE MIR 6 105 -157 767 294 141 16 chr11 32715496 32715999 -116067473 - L1ME4a LINE L1 0 6121 5556 335 203 14 0 chr11 32715999 32716073 -116067399 + MLT1F LTR MaLR 8 82 -460 1045 257 176 36 chr11 32716201 32716594 -116066878 + MLT1F LTR MaLR 95 542 0 430 308 63 32 chr11 32716598 32717021 -116066451 - L1ME4a LINE L1 -593 5528 5089 473 267 0 0 chr11 32717366 32717467 -116066005 - MIR SINE MIR -105 157 57 654 244 195 26 chr11 32718505 32718812 -116064660 - LTR41 LTR ERVL -6 767 409 1578 186 32 70 chr11 32718845 32719217 -116064255 + MLT1A1 LTR MaLR 1 358 -7 982 223 15 0 chr11 32719217 32719419 -116064053 + MLT1A1-int LTR MaLR 2 206 -1529 4848 151 38 13 chr11 32719430 32720306 -116063166 - L1PB4 LINE L1 -5 6151 5254 301 188 0 0 chr11 32720317 32720365 -116063107 - Alu SINE Alu -253 48 1 2250 85 3 26 chr11 32720371 32720677 -116062795 - AluSp SINE Alu -14 299 1 991 169 18 37 chr11 32720680 32720854 -116062618 - L1M2 LINE L1 -4774 2075 1899 198 0 0 0 chr11 32720854 32720876 -116062596 + (TTTAA)n Simple_repeat Simple_repeat 3 24 0 1718 180 18 0 chr11 32720879 32721162 -116062310 - AluJo SINE Alu -24 288 1 991 169 18 37 chr11 32721162 32721256 -116062216 - L1M2 LINE L1 -4952 1897 1808 * 1022 285 64 18 chr11 32721246 32721636 -116061836 - L1PA15-16 LINE L1 -6436 413 6 547 194 37 0 chr11 32721630 32721738 -116061734 + MLT1A1-int LTR MaLR 187 298 -1437 * 315 238 0 0 chr11 32721746 32721809 -116061663 + MER58A DNA MER1_type 46 108 0 587 257 56 64 chr11 32721843 32722092 -116061380 - L1ME LINE L1 -359 5811 5565 186 349 23 68 chr11 32723268 32723400 -116060072 - MER5A DNA MER1_type -43 146 21 2969 237 79 18 chr11 32723514 32724247 -116059225 + MER21B LTR ERV1 26 803 -60 437 325 19 13 chr11 32724731 32724888 -116058584 - MIR3 SINE MIR -13 195 38 241 269 221 19 chr11 32725579 32725683 -116057789 + L2 LINE L2 3147 3271 -1 2118 92 7 7 chr11 32725846 32726158 -116057314 + AluSq SINE Alu 1 312 0 331 311 43 38 chr11 32726709 32726831 -116056641 + MIR SINE MIR 27 148 -78 199 220 0 60 chr11 32726919 32726969 -116056503 - MIR3 SINE MIR -42 166 120 307 221 21 14 chr11 32727086 32727231 -116056241 + (TA)n Simple_repeat Simple_repeat 2 147 0 692 242 63 102 chr11 32728011 32728296 -116055176 - Charlie8 DNA MER1_type -2142 275 2 21 36 0 0 chr11 32728865 32728893 -116054579 + AT_rich Low_complexity Low_complexity 1 28 0 2450 214 65 63 chr11 32729689 32730217 -116053255 - L1ME1 LINE L1 0 6403 5878 261 0 0 0 chr11 32730217 32730246 -116053226 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 1580 148 0 82 chr11 32730247 32730551 -116052921 - AluJb SINE Alu -33 279 1 2450 214 65 63 chr11 32730551 32731236 -116052236 - L1ME1 LINE L1 -524 5879 5052 4857 251 67 23 chr11 32731240 32733243 -116050229 - L1ME1 LINE L1 -2313 3902 1754 1449 186 73 11 chr11 32733243 32733518 -116049954 - AluJb SINE Alu -20 292 1 4857 251 67 23 chr11 32733518 32734465 -116049007 - L1ME1 LINE L1 -4461 1754 850 795 252 35 31 chr11 32734839 32735065 -116048407 + MIR SINE MIR 1 227 -35 499 312 35 6 chr11 32736929 32737099 -116046373 - MIR SINE MIR -6 256 82 430 272 61 14 chr11 32737219 32737366 -116046106 - MIR3 SINE MIR -2 206 53 278 229 160 53 chr11 32737471 32737602 -116045870 + MIR SINE MIR 118 262 0 224 239 0 56 chr11 32738844 32738915 -116044557 - L2 LINE L2 -1 3312 3246 5532 38 12 1 chr11 32739313 32739991 -116043481 - L1PA7 LINE L1 -1 6153 5469 210 71 0 0 chr11 32741422 32741450 -116042022 + (TG)n Simple_repeat Simple_repeat 1 28 0 340 339 73 12 chr11 32743840 32744005 -116039467 + L2 LINE L2 2686 2860 -454 2341 95 0 0 chr11 32744229 32744535 -116038937 - AluSc SINE Alu -3 306 1 272 329 86 21 chr11 32744799 32744939 -116038533 - L2 LINE L2 -4 3309 3161 26 82 0 0 chr11 32746244 32746305 -116037167 + AT_rich Low_complexity Low_complexity 1 61 0 2129 121 0 0 chr11 32746315 32746613 -116036859 + AluSx SINE Alu 3 300 -12 721 170 216 0 chr11 32747206 32747377 -116036095 - MER3 DNA MER1_type 0 209 2 731 261 23 68 chr11 32747379 32747643 -116035829 + MIR SINE MIR 11 262 0 1279 251 89 18 chr11 32748878 32749439 -116034033 + L1MC4 LINE L1 7442 8042 0 1473 134 5 5 chr11 32753638 32753854 -116029618 - AluJb SINE Alu -13 299 84 231 125 0 0 chr11 32754909 32754949 -116028523 + (CATA)n Simple_repeat Simple_repeat 2 41 0 270 236 0 0 chr11 32754984 32755039 -116028433 - Tigger6 DNA MER2_type -1542 55 1 22 35 0 0 chr11 32755795 32755824 -116027648 + AT_rich Low_complexity Low_complexity 1 29 0 520 196 49 136 chr11 32757352 32757536 -116025936 - L2 LINE L2 0 3313 3146 1269 191 127 78 chr11 32757539 32757811 -116025661 - MER69 DNA AcHobo -3 2523 2215 3253 53 0 0 chr11 32757811 32758223 -116025249 - L1PA5 LINE L1 -3 6151 5740 1269 191 127 78 chr11 32758223 32758438 -116025034 - MER69 DNA AcHobo -311 2215 2012 1410 267 201 8 chr11 32758439 32758911 -116024561 - MER69 DNA AcHobo -659 567 5 720 252 198 49 chr11 32758915 32759455 -116024017 - L2 LINE L2 -162 3151 2540 654 294 98 13 chr11 32760174 32760569 -116022903 - LTR16A LTR ERVL 0 491 1 184 221 147 15 chr11 32760638 32760706 -116022766 - MIR SINE MIR -121 141 65 23 33 0 0 chr11 32761186 32761216 -116022256 + AT_rich Low_complexity Low_complexity 1 30 0 449 250 83 0 chr11 32765006 32765138 -116018334 + MER69 DNA AcHobo 2383 2525 -1 288 260 14 27 chr11 32766884 32766957 -116016515 - MER5B DNA MER1_type -3 175 104 1908 225 94 60 chr11 32766961 32768017 -116015455 + MER63C DNA MER1_type 5 925 -5 235 271 59 59 chr11 32768019 32768104 -116015368 + MER5B DNA MER1_type 78 162 -16 316 192 288 0 chr11 32768316 32768389 -116015083 + MER81 DNA DNA 2 95 -19 345 148 0 74 chr11 32768396 32768477 -116014995 + MER3 DNA MER1_type 135 209 0 1983 107 0 0 chr11 32768576 32768865 -116014607 - L1P LINE L1 -2032 4114 3826 6204 97 22 3 chr11 32768865 32770454 -116013018 + L1PA10 LINE L1 4555 6164 -4 26 74 0 0 chr11 32772567 32772621 -116010851 + AT_rich Low_complexity Low_complexity 1 54 0 24 0 0 0 chr11 32772751 32772775 -116010697 + AT_rich Low_complexity Low_complexity 1 24 0 235 313 43 0 chr11 32773141 32773228 -116010244 + MIR SINE MIR 23 116 -107 1063 216 0 43 chr11 32773915 32774147 -116009325 - MER58A DNA MER1_type -1 223 2 391 386 38 0 chr11 32774522 32774680 -116008792 - MIR3 SINE MIR -39 169 6 907 244 30 60 chr11 32774850 32775149 -116008323 + MLT1I LTR MaLR 101 390 -19 303 216 0 105 chr11 32775375 32775419 -116008053 + A-rich Low_complexity Low_complexity 2 49 -89 2854 13 0 0 chr11 32775419 32775732 -116007740 + AluYb8 SINE Alu 1 313 -5 303 216 0 105 chr11 32775732 32775840 -116007632 + A-rich Low_complexity Low_complexity 49 138 0 2270 110 3 0 chr11 32778212 32778521 -116004951 - AluSx SINE Alu -2 310 1 699 307 53 14 chr11 32778779 32779179 -116004293 + LTR16B LTR ERVL 8 464 0 1778 189 0 3 chr11 32779231 32779527 -116003945 + AluJo SINE Alu 1 295 -17 22 0 0 0 chr11 32779527 32779549 -116003923 + AT_rich Low_complexity Low_complexity 1 22 0 2334 65 17 0 chr11 32781874 32782166 -116001306 - AluSg SINE Alu -13 297 1 563 154 8 86 chr11 32783491 32783608 -115999864 - MER58A DNA MER1_type -1 223 116 200 184 20 0 chr11 32783618 32783667 -115999805 + (TA)n Simple_repeat Simple_repeat 2 51 0 350 258 0 72 chr11 32783705 32783802 -115999670 - MER58A DNA MER1_type -17 90 1 294 29 0 0 chr11 32786993 32787028 -115996444 + (TG)n Simple_repeat Simple_repeat 2 36 0 26 74 0 0 chr11 32787175 32787229 -115996243 + AT_rich Low_complexity Low_complexity 1 54 0 33 43 0 0 chr11 32787795 32787842 -115995630 + AT_rich Low_complexity Low_complexity 1 47 0 207 294 0 0 chr11 32788317 32788368 -115995104 + MIR SINE MIR 48 98 -164 1907 115 19 39 chr11 32788643 32788955 -115994517 - AluSx SINE Alu -6 306 1 252 300 36 61 chr11 32788955 32789232 -115994240 - L1ME LINE L1 -502 5619 5350 26 0 0 0 chr11 32789510 32789536 -115993936 + AT_rich Low_complexity Low_complexity 1 26 0 383 196 31 21 chr11 32789644 32789741 -115993731 - MER46C DNA MER2_type -2 336 239 2064 112 3 45 chr11 32790592 32790904 -115992568 - AluSx SINE Alu -13 299 1 225 132 0 0 chr11 32792729 32792767 -115990705 + (A)n Simple_repeat Simple_repeat 1 38 0 1308 133 177 20 chr11 32792783 32793056 -115990416 + AluSx SINE Alu 1 312 0 229 30 0 0 chr11 32793201 32793234 -115990238 + Alu SINE Alu 263 295 -7 340 235 69 93 chr11 32793243 32793268 -115990204 + L1ME4a LINE L1 5611 5635 -486 4824 91 39 13 chr11 32793268 32793762 -115989710 - L1PB2 LINE L1 0 6151 5631 5149 78 1 27 chr11 32793762 32794468 -115989004 + LTR12 LTR ERV1 1 688 0 4824 91 39 13 chr11 32794468 32794685 -115988787 - L1ME4a LINE L1 -520 5631 5421 340 235 69 93 chr11 32794685 32794924 -115988548 + L1ME4a LINE L1 5635 5883 -238 228 35 0 0 chr11 32795091 32795120 -115988352 + (TCTA)n Simple_repeat Simple_repeat 2 30 0 307 295 0 21 chr11 32795637 32795732 -115987740 - MIR SINE MIR -137 125 33 1250 129 117 0 chr11 32796364 32796612 -115986860 + L1MA7 LINE L1 6015 6291 0 543 255 34 20 chr11 32796782 32796931 -115986541 - MLT1J1 LTR MaLR -295 151 1 227 283 103 21 chr11 32797636 32797781 -115985691 + L2 LINE L2 2701 2857 -457 2133 105 0 0 chr11 32798019 32798304 -115985168 + AluSx SINE Alu 1 285 -27 297 0 0 0 chr11 32798304 32798337 -115985135 + (CA)n Simple_repeat Simple_repeat 2 34 0 213 65 0 0 chr11 32798378 32798409 -115985063 + (CA)n Simple_repeat Simple_repeat 1 31 0 258 298 78 120 chr11 32798409 32798444 -115985028 + L2 LINE L2 2928 2963 -309 2156 128 128 10 chr11 32798444 32798827 -115984645 + MSTA LTR MaLR 1 428 0 258 298 78 120 chr11 32798827 32799100 -115984372 + L2 LINE L2 2963 3223 -49 269 133 22 0 chr11 32799828 32799873 -115983599 - L2 LINE L2 -19 3294 3249 414 338 125 40 chr11 32800054 32800350 -115983122 - L2 LINE L2 -6 3266 2946 203 271 114 14 chr11 32800389 32800459 -115983013 - MIR SINE MIR -75 187 111 1589 191 72 6 chr11 32800562 32800924 -115982548 - MER58D DNA MER1_type 0 386 1 1103 178 91 0 chr11 32800947 32801200 -115982272 - MER33 DNA MER1_type 0 324 49 312 295 36 18 chr11 32801267 32801379 -115982093 - Charlie8 DNA MER1_type -2160 257 144 1306 163 130 43 chr11 32801616 32801892 -115981580 + AluJo SINE Alu 1 300 -12 375 181 0 0 chr11 32801892 32801964 -115981508 + (TA)n Simple_repeat Simple_repeat 1 72 0 1938 170 24 19 chr11 32801965 32802388 -115981084 + L1MB3 LINE L1 5757 6181 -2 1785 141 17 47 chr11 32802420 32802609 -115980863 - L1MA8 LINE L1 -1 6290 6097 189 74 0 0 chr11 32802609 32802636 -115980836 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 2423 50 0 30 chr11 32802636 32802935 -115980537 - AluY SINE Alu -21 290 1 1785 141 17 47 chr11 32802935 32803105 -115980367 - L1MA8 LINE L1 -192 6099 5941 231 198 27 63 chr11 32803466 32803577 -115979895 + A-rich Low_complexity Low_complexity 5 111 0 267 316 13 0 chr11 32807630 32807709 -115975763 - MER119 DNA MER1_type -499 84 5 552 184 87 0 chr11 32808696 32808799 -115974673 + Tigger3(Golem) DNA MER2_type 2 113 -2916 * 4690 105 57 20 chr11 32808796 32809599 -115973873 + Tigger3(Golem) DNA MER2_type 2069 2901 -128 573 244 18 83 chr11 32809651 32809851 -115973621 - L1MC/D LINE L1 -743 5403 5389 1701 155 72 11 chr11 32809851 32810129 -115973343 - AluJo SINE Alu -17 295 1 573 244 18 83 chr11 32810129 32810284 -115973188 - L1MC/D LINE L1 -757 5389 5226 916 204 14 24 chr11 32810920 32811131 -115972341 + L1MC3 LINE L1 6100 6308 -1477 222 235 20 0 chr11 32811154 32811205 -115972267 + GA-rich Low_complexity Low_complexity 2 53 0 456 275 8 15 chr11 32812272 32812403 -115971069 - MER5B DNA MER1_type -3 175 46 205 381 17 17 chr11 32812915 32813033 -115970439 + L2 LINE L2 3160 3277 -36 593 291 41 57 chr11 32813129 32813373 -115970099 + MIR SINE MIR 19 258 -4 22 0 0 0 chr11 32813375 32813397 -115970075 + AT_rich Low_complexity Low_complexity 1 22 0 2867 95 10 0 chr11 32813461 32813886 -115969586 + L1PA8A LINE L1 5701 6166 -6 349 250 234 0 chr11 32814146 32814270 -115969202 - L2 LINE L2 0 3313 3161 204 338 15 0 chr11 32814660 32814728 -115968744 - L2 LINE L2 -666 2648 2580 2230 88 7 0 chr11 32815330 32815646 -115967826 - AluSp SINE Alu 0 318 1 1006 260 5 0 chr11 32815734 32815957 -115967515 - MER58A DNA MER1_type 0 224 1 478 259 91 28 chr11 32815963 32816106 -115967366 - MLT1I LTR MaLR -66 343 192 29 0 0 0 chr11 32816673 32816702 -115966770 + AT_rich Low_complexity Low_complexity 1 29 0 2324 171 26 9 chr11 32816994 32817421 -115966051 - Tigger2a DNA MER2_type 0 434 1 202 254 16 16 chr11 32817500 32817563 -115965909 - MIR3 SINE MIR -5 203 141 24 53 0 0 chr11 32817665 32817703 -115965769 + AT_rich Low_complexity Low_complexity 1 38 0 300 70 0 0 chr11 32818247 32818290 -115965182 + (CA)n Simple_repeat Simple_repeat 1 43 0 7080 179 112 23 chr11 32818413 32819836 -115963636 + MER52A LTR ERV1 1 1550 -205 5255 239 22 25 chr11 32820232 32822667 -115960805 + L1MA6 LINE L1 2055 4173 -3392 3432 165 34 30 chr11 32822668 32823212 -115960260 + L1MA6 LINE L1 6168 6708 -1011 2214 118 0 0 chr11 32823212 32823509 -115959963 - AluSg SINE Alu -13 297 1 3432 165 34 30 chr11 32823509 32824181 -115959291 + L1MA6 LINE L1 6708 7403 -316 2640 146 29 12 chr11 32824172 32824652 -115958820 + L1M2 LINE L1 4924 5411 -2154 * 1283 189 11 23 chr11 32824653 32824918 -115958554 + L1MA6 LINE L1 7412 7673 -46 * 12233 145 59 118 chr11 32824917 32827112 -115956360 + L1PA7 LINE L1 2 2327 -3819 212 0 36 0 chr11 32827112 32827140 -115956332 + (CAA)n Simple_repeat Simple_repeat 2 30 0 12233 145 59 118 chr11 32827140 32828018 -115955454 + L1PA7 LINE L1 2327 2890 -3256 8273 76 16 0 chr11 32828018 32829938 -115953534 + L1PA7 LINE L1 4205 6152 -2 12233 145 59 118 chr11 32829938 32829969 -115953503 + L1PA7 LINE L1 2890 2921 -3225 768 297 84 16 chr11 32830488 32830918 -115952554 + L2 LINE L2 2593 3060 -253 437 180 169 0 chr11 32831658 32831747 -115951725 + L2 LINE L2 3208 3311 -2 318 297 10 40 chr11 32831819 32831920 -115951552 + L2 LINE L2 3175 3272 0 499 242 83 0 chr11 32832518 32832638 -115950834 - FLAM_A SINE Alu -2 131 2 247 279 115 49 chr11 32832641 32832763 -115950709 - MIR SINE MIR -64 198 69 348 216 93 103 chr11 32832867 32833061 -115950411 - L2 LINE L2 0 3313 3122 1817 214 0 14 chr11 32833320 32833690 -115949782 + MLT1A1 LTR MaLR 1 365 0 2221 185 66 27 chr11 32833977 32834463 -115949009 - MLT1D LTR MaLR 0 505 1 474 288 73 6 chr11 32834700 32834877 -115948595 - MIR SINE MIR -26 236 48 534 298 174 20 chr11 32834993 32835389 -115948083 - L1MC/D LINE L1 -2038 5770 5314 1674 129 32 110 chr11 32835427 32835799 -115947673 + MER2 DNA MER2_type 1 343 -1 351 328 140 9 chr11 32836508 32836737 -115946735 + L2 LINE L2 2391 2649 -665 243 352 52 48 chr11 32836881 32837111 -115946361 + L2 LINE L2 2823 3053 -219 2741 193 16 39 chr11 32837249 32837814 -115945658 + MLT2B3 LTR ERVL 3 554 0 1196 184 5 5 chr11 32837839 32838046 -115945426 + MER46A DNA MER2_type 1 207 -29 1026 249 140 10 chr11 32838892 32839386 -115944086 - L1ME4a LINE L1 -1 6120 5563 355 288 125 27 chr11 32839726 32839910 -115943562 + MIR3 SINE MIR 6 207 -1 419 256 130 70 chr11 32840070 32840371 -115943101 + L2 LINE L2 2995 3313 0 2760 226 69 30 chr11 32840760 32841518 -115941954 - MER21B LTR ERV1 -58 805 19 451 162 27 0 chr11 32841544 32841618 -115941854 - MER21B LTR ERV1 -773 90 15 358 285 151 12 chr11 32841975 32842147 -115941325 - MIR SINE MIR -65 197 2 325 306 116 7 chr11 32842362 32842509 -115940963 + MIR SINE MIR 50 212 -50 22 35 0 0 chr11 32842919 32842948 -115940524 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr11 32845149 32845175 -115938297 + AT_rich Low_complexity Low_complexity 1 26 0 24 53 0 0 chr11 32845337 32845375 -115938097 + AT_rich Low_complexity Low_complexity 1 38 0 263 333 137 0 chr11 32845574 32845691 -115937781 + L2 LINE L2 3181 3313 0 41 48 0 0 chr11 32845776 32845838 -115937634 + AT_rich Low_complexity Low_complexity 1 62 0 1738 176 0 26 chr11 32846800 32847107 -115936365 + AluJb SINE Alu 2 300 -12 272 242 22 11 chr11 32848316 32848407 -115935065 + L1M4 LINE L1 4080 4171 -1975 594 225 70 7 chr11 32848561 32848703 -115934769 + MER63A DNA MER1_type 60 210 0 302 246 36 22 chr11 32848708 32848846 -115934626 + L1M4 LINE L1 2956 3095 -3051 2072 119 3 0 chr11 32849068 32849370 -115934102 + AluSx SINE Alu 10 312 0 848 230 125 10 chr11 32849679 32849879 -115933593 + MER58A DNA MER1_type 2 224 0 900 151 38 16 chr11 32850244 32850429 -115933043 + MER53 DNA DNA 1 189 0 267 106 0 0 chr11 32850454 32850501 -115932971 + L1MA3 LINE L1 6259 6305 0 516 261 195 8 chr11 32850636 32850877 -115932595 + L1MC4 LINE L1 7206 7491 -551 2028 112 0 10 chr11 32850928 32851233 -115932239 - AluSg SINE Alu -8 302 1 652 226 107 29 chr11 32851239 32851482 -115931990 + Charlie4 DNA MER1_type 1 262 -1699 679 229 35 6 chr11 32851612 32851782 -115931690 + MIR SINE MIR 88 262 0 24 32 0 0 chr11 32851804 32851835 -115931637 + AT_rich Low_complexity Low_complexity 1 31 0 2277 291 181 19 chr11 32851985 32853586 -115929886 + L2 LINE L2 1414 3295 -18 2389 97 0 0 chr11 32854949 32855259 -115928213 + AluSg SINE Alu 1 310 0 331 229 236 14 chr11 32855284 32855428 -115928044 - MIR SINE MIR -31 231 56 2439 67 0 3 chr11 32856319 32856617 -115926855 + AluY SINE Alu 1 297 -14 21 57 0 0 chr11 32856670 32856705 -115926767 + AT_rich Low_complexity Low_complexity 1 35 0 328 294 112 42 chr11 32856981 32857425 -115926047 + L1MC/D LINE L1 5270 5758 -363 558 0 0 0 chr11 32857619 32857681 -115925791 + (TC)n Simple_repeat Simple_repeat 2 63 0 2279 99 0 10 chr11 32857955 32858259 -115925213 + AluSg SINE Alu 1 301 -9 207 286 0 0 chr11 32858416 32858465 -115925007 + (TATATG)n Simple_repeat Simple_repeat 1 49 0 35 0 0 0 chr11 32859449 32859484 -115923988 + AT_rich Low_complexity Low_complexity 1 35 0 724 167 0 8 chr11 32859677 32859809 -115923663 + FLAM_A SINE Alu 6 136 -6 2256 92 3 3 chr11 32860037 32860330 -115923142 + AluSc SINE Alu 1 293 -16 194 254 85 0 chr11 32861378 32861437 -115922035 + L2 LINE L2 2667 2730 -584 198 118 0 0 chr11 32863616 32863650 -115919822 + (CA)n Simple_repeat Simple_repeat 1 34 0 23 68 0 0 chr11 32863696 32863740 -115919732 + AT_rich Low_complexity Low_complexity 1 44 0 638 258 44 81 chr11 32864259 32864530 -115918942 - MIR SINE MIR 0 262 2 487 237 182 36 chr11 32864876 32865129 -115918343 + MARNA DNA Mariner 288 577 -9 1401 236 25 19 chr11 32865251 32865616 -115917856 - MLT1A2 LTR MaLR -4 370 4 4003 198 179 27 chr11 32865639 32866578 -115916894 - MLT1A2-int LTR MaLR -24 1347 156 2074 136 3 3 chr11 32866578 32866887 -115916585 - AluSx SINE Alu -3 309 1 4003 198 179 27 chr11 32866887 32867067 -115916405 - MLT1A2-int LTR MaLR -1215 156 5 1270 251 29 42 chr11 32867071 32867450 -115916022 - MLT1A2 LTR MaLR 0 374 1 237 108 0 0 chr11 32867844 32867881 -115915591 + (TATG)n Simple_repeat Simple_repeat 1 37 0 658 275 85 64 chr11 32867882 32868318 -115915154 + L1ME3A LINE L1 5504 5948 -222 280 250 14 0 chr11 32868318 32868390 -115915082 + (TA)n Simple_repeat Simple_repeat 2 74 0 2568 75 8 22 chr11 32868390 32868750 -115914722 + THE1A LTR MaLR 1 355 0 219 114 0 0 chr11 32868752 32868787 -115914685 + (TA)n Simple_repeat Simple_repeat 1 35 0 5944 97 6 18 chr11 32868787 32870050 -115913422 + L1PB2 LINE L1 4892 6148 -3 282 196 33 0 chr11 32870063 32870155 -115913317 + (TA)n Simple_repeat Simple_repeat 1 95 0 207 191 0 0 chr11 32870216 32870279 -115913193 + (TA)n Simple_repeat Simple_repeat 2 64 0 2955 262 115 25 chr11 32870764 32871659 -115911813 + L1MEc LINE L1 1137 1950 -4265 2108 176 73 2 chr11 32871659 32872057 -115911415 - MSTB LTR MaLR 0 426 1 2955 262 115 25 chr11 32872057 32873389 -115910083 + L1MEc LINE L1 1950 3538 -2677 1034 124 118 11 chr11 32873391 32873577 -115909895 + L1PA16 LINE L1 5952 6157 -9 1228 253 44 52 chr11 32873596 32874078 -115909394 + L1MEc LINE L1 3524 4001 -2214 2721 183 40 5 chr11 32874198 32874767 -115908705 + L1 LINE L1 3791 4379 -1767 411 170 21 11 chr11 32874767 32874855 -115908617 + L1MB2 LINE L1 6075 6169 -2 192 125 0 0 chr11 32874879 32874911 -115908561 + (A)n Simple_repeat Simple_repeat 1 32 0 1000 178 31 97 chr11 32875233 32875481 -115907991 - Charlie2 DNA MER1_type -45 2817 2593 1650 151 4 14 chr11 32875481 32875759 -115907713 - AluJo SINE Alu -9 303 29 1000 178 31 97 chr11 32875759 32875831 -115907641 - Charlie2 DNA MER1_type -269 2593 2518 999 236 64 22 chr11 32875802 32876175 -115907297 - Charlie2 DNA MER1_type -2427 435 13 * 190 323 71 24 chr11 32877169 32877296 -115906176 + MIR3 SINE MIR 43 175 -33 * 236 269 0 0 chr11 32877281 32877333 -115906139 - MIR SINE MIR -1 261 210 1939 100 7 7 chr11 32877340 32877610 -115905862 + AluSx SINE Alu 11 280 -32 1807 113 0 92 chr11 32879399 32879727 -115903745 - MER4A LTR ERV1 0 664 367 1992 101 49 11 chr11 32879849 32880136 -115903336 + AluSg SINE Alu 1 298 -12 2159 143 11 21 chr11 32880517 32880896 -115902576 + THE1C LTR MaLR 1 375 0 1243 102 30 5 chr11 32880896 32881093 -115902379 + THE1C-int LTR MaLR 1 202 -1378 277 239 177 35 chr11 32881244 32881357 -115902115 + L2 LINE L2 3178 3306 -7 312 91 0 0 chr11 32881375 32881419 -115902053 + (GCTG)n Simple_repeat Simple_repeat 2 45 0 1330 195 78 67 chr11 32881687 32882138 -115901334 - LTR16A1 LTR ERVL -1 456 1 1582 163 77 25 chr11 32882149 32882475 -115900997 - MER2 DNA MER2_type -1 343 1 240 320 90 16 chr11 32882493 32882615 -115900857 + L2 LINE L2 2728 2858 -456 906 134 0 32 chr11 32882624 32882810 -115900662 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 193 272 79 50 chr11 32882847 32882912 -115900560 + L2 LINE L2 2818 2880 -433 2129 76 0 11 chr11 32882912 32883188 -115900284 - AluSq SINE Alu -36 277 5 193 272 79 50 chr11 32883188 32883324 -115900148 + L2 LINE L2 2880 3025 -288 181 281 211 44 chr11 32883335 32883449 -115900023 + L2 LINE L2 3138 3270 -2 876 255 75 0 chr11 32883633 32883845 -115899627 + MIR SINE MIR 8 235 -27 458 215 188 13 chr11 32883897 32884046 -115899426 + MER96 DNA MER1_type? 1 175 0 704 219 57 10 chr11 32884076 32884274 -115899198 + LTR33A LTR ERVL 309 520 -3 237 336 211 19 chr11 32884338 32884546 -115898926 - MIR SINE MIR -6 256 9 2583 164 33 14 chr11 32884713 32885224 -115898248 - L1MB5 LINE L1 -8 6166 5646 850 239 58 5 chr11 32887592 32887797 -115895675 + MIR SINE MIR 37 252 -10 268 396 53 27 chr11 32888089 32888276 -115895196 + L3b LINE CR1 1384 1575 -8 1607 164 26 3 chr11 32888508 32888813 -115894659 + L1 LINE L1 4068 4379 -1767 411 170 21 11 chr11 32888813 32888901 -115894571 + L1MB2 LINE L1 6075 6169 -2 192 125 0 0 chr11 32888925 32888957 -115894515 + (A)n Simple_repeat Simple_repeat 1 32 0 881 190 37 33 chr11 32889279 32889521 -115893951 - Charlie2 DNA MER1_type -45 2817 2575 1650 151 4 14 chr11 32889527 32889805 -115893667 - AluJo SINE Alu -9 303 29 1131 236 156 21 chr11 32889848 32890221 -115893251 - Charlie2 DNA MER1_type -2427 435 13 181 319 74 25 chr11 32890990 32891153 -115892319 + L2 LINE L2 1790 1960 -1354 190 323 71 24 chr11 32891216 32891343 -115892129 + MIR3 SINE MIR 43 175 -33 * 450 229 49 69 chr11 32891328 32891387 -115892085 - MIR SINE MIR -1 261 202 2137 109 3 0 chr11 32891387 32891672 -115891800 + AluSx SINE Alu 11 296 -16 450 229 49 69 chr11 32891672 32891756 -115891716 - MIR SINE MIR -60 202 121 237 320 67 0 chr11 32891727 32891802 -115891670 + MIR3 SINE MIR 124 203 -5 * 192 293 66 78 chr11 32891858 32892025 -115891447 + L2 LINE L2 3127 3291 -22 493 120 0 0 chr11 32892452 32892527 -115890945 + Charlie5 DNA MER1_type 33 107 -2505 25 51 0 0 chr11 32894146 32894185 -115889287 + AT_rich Low_complexity Low_complexity 1 39 0 24 32 0 0 chr11 32894334 32894365 -115889107 + AT_rich Low_complexity Low_complexity 1 31 0 30 0 0 0 chr11 32898337 32898367 -115885105 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr11 32898658 32898683 -115884789 + AT_rich Low_complexity Low_complexity 1 25 0 22 56 0 0 chr11 32899970 32900006 -115883466 + AT_rich Low_complexity Low_complexity 1 36 0 21 82 0 0 chr11 32901689 32901738 -115881734 + AT_rich Low_complexity Low_complexity 1 49 0 23 0 0 0 chr11 32902699 32902722 -115880750 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr11 32902777 32902814 -115880658 + AT_rich Low_complexity Low_complexity 1 37 0 272 318 32 40 chr11 32903627 32903753 -115879719 + L2 LINE L2 2968 3092 -180 187 254 0 90 chr11 32907030 32907097 -115876375 + MIR SINE MIR 101 161 -101 340 281 91 16 chr11 32908397 32908518 -115874954 + L3 LINE CR1 214 343 -1234 291 54 0 0 chr11 32908956 32908993 -115874479 + (CA)n Simple_repeat Simple_repeat 2 38 0 186 43 0 0 chr11 32908993 32909016 -115874456 + (TA)n Simple_repeat Simple_repeat 1 23 0 2326 92 0 0 chr11 32909329 32909623 -115873849 - AluSc SINE Alu -15 294 1 302 282 73 36 chr11 32909651 32909761 -115873711 - L2 LINE L2 -32 3281 3168 986 251 119 25 chr11 32909839 32910166 -115873306 + MLT2D LTR ERVL 1 358 -56 264 77 0 0 chr11 32910168 32910207 -115873265 + (GA)n Simple_repeat Simple_repeat 2 40 0 304 322 87 33 chr11 32910291 32910533 -115872939 - L2 LINE L2 -214 3058 2804 1192 321 157 13 chr11 32910702 32911331 -115872141 + L3 LINE CR1 570 1289 -288 469 283 329 13 chr11 32911465 32911839 -115871633 + L3 LINE CR1 1072 1563 -14 22 35 0 0 chr11 32912160 32912189 -115871283 + AT_rich Low_complexity Low_complexity 1 29 0 697 67 0 0 chr11 32912242 32912332 -115871140 - AluY SINE Alu -12 299 210 640 225 51 0 chr11 32912536 32912674 -115870798 + MLT1F1 LTR MaLR 422 566 -1 244 225 70 14 chr11 32912881 32912952 -115870520 + MLT1I LTR MaLR 286 360 -49 543 220 240 15 chr11 32913459 32913659 -115869813 - MLT1H LTR MaLR -19 530 286 4525 178 25 22 chr11 32913673 32914359 -115869113 - L1MB5 LINE L1 -8 6166 5484 198 71 0 0 chr11 32914359 32914387 -115869085 + (TG)n Simple_repeat Simple_repeat 1 28 0 4525 178 25 22 chr11 32914387 32915152 -115868320 - L1MB5 LINE L1 -690 5484 4714 471 257 37 86 chr11 32915169 32915356 -115868116 - MER21B LTR ERV1 -196 667 490 21 0 0 0 chr11 32915630 32915651 -115867821 + AT_rich Low_complexity Low_complexity 1 21 0 408 40 0 0 chr11 32916579 32916629 -115866843 + (CA)n Simple_repeat Simple_repeat 2 51 0 2175 96 0 7 chr11 32917958 32918251 -115865221 + AluSq SINE Alu 5 295 -18 882 224 98 5 chr11 32918317 32918522 -115864950 - MIR SINE MIR -24 238 15 1302 211 88 6 chr11 32920303 32920621 -115862851 - MER2 DNA MER2_type -1 344 1 1702 156 20 23 chr11 32920869 32921170 -115862302 + AluJo SINE Alu 1 300 -12 289 320 80 0 chr11 32922995 32923120 -115860352 - L2 LINE L2 -1 3271 3137 189 147 0 0 chr11 32923316 32923350 -115860122 + (GA)n Simple_repeat Simple_repeat 1 34 0 807 263 120 0 chr11 32923354 32923563 -115859909 + MIR SINE MIR 8 241 -21 621 215 40 118 chr11 32923672 32923900 -115859572 - MER63A DNA MER1_type 0 210 1 21 57 0 0 chr11 32924119 32924154 -115859318 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr11 32924495 32924518 -115858954 + AT_rich Low_complexity Low_complexity 1 23 0 340 275 130 25 chr11 32924558 32924834 -115858638 + L1ME4a LINE L1 5799 6103 -18 2214 101 0 3 chr11 32926079 32926377 -115857095 - AluSp SINE Alu -16 297 1 27 0 0 0 chr11 32927198 32927225 -115856247 + AT_rich Low_complexity Low_complexity 1 27 0 3763 91 18 9 chr11 32927254 32927806 -115855666 - L1PA16 LINE L1 -156 6010 5454 1693 179 3 13 chr11 32928271 32928572 -115854900 - AluJb SINE Alu -14 298 1 1365 245 28 3 chr11 32929007 32929330 -115854142 + MER58B DNA MER1_type 2 332 -9 361 326 144 33 chr11 32929336 32929551 -115853921 + L2 LINE L2 189 427 -2887 1128 343 82 21 chr11 32929738 32930539 -115852933 + L2 LINE L2 1104 1953 -1361 2050 117 46 57 chr11 32930549 32930767 -115852705 - THE1B LTR MaLR 0 364 150 2164 108 0 3 chr11 32930767 32931063 -115852409 + AluSg SINE Alu 1 295 -15 2050 117 46 57 chr11 32931063 32931212 -115852260 - THE1B LTR MaLR -214 150 1 9280 99 138 4 chr11 32931227 32932616 -115850856 - THE1B-int LTR MaLR -5 1575 1 2107 111 63 23 chr11 32932616 32932966 -115850506 - THE1B LTR MaLR 0 364 1 350 239 150 0 chr11 32933176 32933289 -115850183 - L2 LINE L2 0 3313 3184 2107 136 0 0 chr11 32933601 32933896 -115849576 - AluSg SINE Alu -12 298 4 376 237 140 0 chr11 32933919 32934033 -115849439 + L2 LINE L2 3184 3313 0 530 221 73 135 chr11 32934261 32934408 -115849064 + MLT1L LTR MaLR 1 123 -492 2009 91 4 0 chr11 32934408 32934671 -115848801 - AluSp SINE Alu -16 297 34 530 221 73 135 chr11 32934671 32934812 -115848660 + MLT1L LTR MaLR 123 271 -344 271 247 196 0 chr11 32934957 32935054 -115848418 + MLT1L LTR MaLR 498 613 -2 230 282 43 37 chr11 32935862 32935880 -115847592 - L1MA10 LINE L1 -2 6332 6315 2685 227 82 60 chr11 32935880 32937213 -115846259 - L1ME2 LINE L1 -10 6223 4842 3037 138 0 8 chr11 32937213 32937713 -115845759 + L1MA8 LINE L1 5793 6288 -3 2685 227 82 60 chr11 32937713 32938140 -115845332 - L1ME2 LINE L1 -1391 4842 4426 3552 60 15 6 chr11 32938328 32938795 -115844677 + L1PA7 LINE L1 5678 6148 -6 2379 263 82 18 chr11 32939953 32940476 -115842996 - L1ME2 LINE L1 -1778 4437 3830 1969 134 45 31 chr11 32940476 32940835 -115842637 + THE1B LTR MaLR 1 364 0 2379 263 82 18 chr11 32940835 32941208 -115842264 - L1ME2 LINE L1 -2385 3830 3483 312 119 60 60 chr11 32941208 32941275 -115842197 - MLT2A2 LTR ERVL 0 453 387 27 49 0 0 chr11 32941314 32941355 -115842117 + AT_rich Low_complexity Low_complexity 1 41 0 424 294 7 0 chr11 32941426 32941562 -115841910 - L1ME2 LINE L1 -3320 2895 2759 1691 262 68 58 chr11 32941564 32942493 -115840979 - L1ME2 LINE L1 -4619 1777 840 296 368 75 10 chr11 32942651 32942852 -115840620 - L1ME2 LINE L1 -5931 465 252 389 335 24 19 chr11 32942879 32943085 -115840387 - L1ME2 LINE L1 -6133 263 57 194 325 193 9 chr11 32943203 32943317 -115840155 + MIR3 SINE MIR 40 174 -34 35 63 0 0 chr11 32943437 32943500 -115839972 + AT_rich Low_complexity Low_complexity 1 63 0 2218 113 0 0 chr11 32943546 32943839 -115839633 - AluSx SINE Alu -19 293 1 702 285 0 16 chr11 32944997 32945183 -115838289 - MER5A DNA MER1_type -6 183 1 235 194 153 40 chr11 32945335 32945459 -115838013 + Charlie7 DNA MER1_type 21 158 -2454 701 282 285 0 chr11 32945485 32945836 -115837636 + HAL1 LINE L1 154 604 -1903 566 305 68 16 chr11 32945848 32946097 -115837375 + HAL1 LINE L1 645 906 -1601 207 25 75 0 chr11 32946114 32946154 -115837318 + A-rich Low_complexity Low_complexity 1 43 0 529 278 128 21 chr11 32946233 32946806 -115836666 + HAL1 LINE L1 1185 1887 -620 23 33 0 0 chr11 32947723 32947753 -115835719 + AT_rich Low_complexity Low_complexity 1 30 0 268 396 53 27 chr11 32948115 32948302 -115835170 - L3b LINE CR1 -8 1575 1384 856 239 58 5 chr11 32948594 32948799 -115834673 - MIR SINE MIR -10 252 37 2571 164 33 14 chr11 32951167 32951678 -115831794 + L1MB5 LINE L1 5646 6166 -8 234 336 211 19 chr11 32951844 32952052 -115831420 + MIR SINE MIR 9 256 -6 713 219 57 10 chr11 32952116 32952314 -115831158 - LTR33A LTR ERVL -3 520 309 468 215 188 13 chr11 32952344 32952493 -115830979 - MER96 DNA MER1_type? 0 175 1 876 255 75 0 chr11 32952545 32952757 -115830715 - MIR SINE MIR -27 235 8 187 272 211 44 chr11 32952941 32953055 -115830417 - L2 LINE L2 -2 3270 3138 215 287 79 50 chr11 32953066 32953202 -115830270 - L2 LINE L2 -288 3025 2880 2167 76 0 11 chr11 32953202 32953478 -115829994 + AluSq SINE Alu 5 277 -36 215 287 79 50 chr11 32953478 32953543 -115829929 - L2 LINE L2 -433 2880 2818 888 137 11 22 chr11 32953580 32953762 -115829710 + GA-rich Low_complexity Low_complexity 1 180 0 244 320 90 16 chr11 32953771 32953893 -115829579 - L2 LINE L2 -456 2858 2728 1578 163 77 25 chr11 32953911 32954237 -115829235 + MER2 DNA MER2_type 1 343 -1 1373 195 78 67 chr11 32954248 32954699 -115828773 + LTR16A1 LTR ERVL 1 456 -1 312 91 0 0 chr11 32954967 32955011 -115828461 + (CAGC)n Simple_repeat Simple_repeat 2 45 0 276 239 177 35 chr11 32955029 32955142 -115828330 - L2 LINE L2 -7 3306 3178 1248 102 30 5 chr11 32955293 32955490 -115827982 - THE1C-int LTR MaLR -1378 202 1 2142 142 11 26 chr11 32955490 32955871 -115827601 - THE1C LTR MaLR 0 375 1 2022 101 49 11 chr11 32956252 32956539 -115826933 - AluSg SINE Alu -12 298 1 1793 116 0 92 chr11 32956661 32956989 -115826483 + MER4A LTR ERV1 367 664 0 2259 113 0 0 chr11 32958748 32959050 -115824422 - AluSc SINE Alu -7 302 1 336 234 43 0 chr11 32959050 32959136 -115824336 - MIR SINE MIR -94 168 76 215 271 75 75 chr11 32959372 32959479 -115823993 - MIR SINE MIR -108 154 48 204 125 0 0 chr11 32961964 32961996 -115821476 + L2 LINE L2 3272 3303 -10 313 211 18 0 chr11 32962101 32962158 -115821314 + L2 LINE L2 3214 3271 -1 24 0 0 0 chr11 32965573 32965597 -115817875 + AT_rich Low_complexity Low_complexity 1 24 0 27 62 0 0 chr11 32965723 32965771 -115817701 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr11 32965975 32965996 -115817476 + AT_rich Low_complexity Low_complexity 1 21 0 207 69 0 0 chr11 32966386 32966415 -115817057 + (CAAAAA)n Simple_repeat Simple_repeat 1 29 0 738 322 13 9 chr11 32966884 32967117 -115816355 - MIR SINE MIR -27 235 2 507 245 39 0 chr11 32967411 32967513 -115815959 - MER81 DNA DNA -8 106 1 21 36 0 0 chr11 32967649 32967677 -115815795 + AT_rich Low_complexity Low_complexity 1 28 0 339 25 0 0 chr11 32968032 32968072 -115815400 + (TG)n Simple_repeat Simple_repeat 1 40 0 226 322 78 26 chr11 32968855 32968970 -115814502 + MLT1K LTR MaLR 3 123 -465 25 0 0 0 chr11 32969004 32969029 -115814443 + AT_rich Low_complexity Low_complexity 1 25 0 2177 100 36 3 chr11 32969197 32969498 -115813974 - AluY SINE Alu 0 311 1 503 216 144 0 chr11 32971124 32971249 -115812223 - MIR SINE MIR -2 260 118 2272 172 50 23 chr11 32971284 32971721 -115811751 + MLT2B1 LTR ERVL 1 449 -71 810 142 8 15 chr11 32971764 32971898 -115811574 + FLAM_C SINE Alu 1 133 -10 48 18 0 0 chr11 32971909 32971964 -115811508 + AT_rich Low_complexity Low_complexity 1 55 0 258 62 0 0 chr11 32971964 32971996 -115811476 + MLT2B1 LTR ERVL 425 456 -8 275 290 36 21 chr11 32972000 32972193 -115811279 - L1MEc LINE L1 -4178 2218 2023 280 281 24 12 chr11 32972320 32972402 -115811070 - L1MEc LINE L1 -5767 438 356 24 53 0 0 chr11 32972422 32972460 -115811012 + AT_rich Low_complexity Low_complexity 1 38 0 265 396 53 27 chr11 33022789 33022976 -115760496 - L3b LINE CR1 -8 1575 1384 860 239 58 5 chr11 33023268 33023473 -115759999 - MIR SINE MIR -10 252 37 2571 164 33 14 chr11 33025841 33026352 -115757120 + L1MB5 LINE L1 5646 6166 -8 234 336 211 19 chr11 33026519 33026727 -115756745 + MIR SINE MIR 9 256 -6 713 219 57 10 chr11 33026791 33026989 -115756483 - LTR33A LTR ERVL -3 520 309 468 215 188 13 chr11 33027019 33027168 -115756304 - MER96 DNA MER1_type? 0 175 1 876 255 75 0 chr11 33027220 33027432 -115756040 - MIR SINE MIR -27 235 8 187 272 211 44 chr11 33027616 33027730 -115755742 - L2 LINE L2 -2 3270 3138 215 287 79 50 chr11 33027741 33027877 -115755595 - L2 LINE L2 -288 3025 2880 2142 80 0 11 chr11 33027877 33028153 -115755319 + AluSq SINE Alu 5 277 -36 215 287 79 50 chr11 33028153 33028218 -115755254 - L2 LINE L2 -433 2880 2818 212 175 25 0 chr11 33028218 33028258 -115755214 + GA-rich Low_complexity Low_complexity 1 41 0 906 134 0 32 chr11 33028259 33028445 -115755027 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 244 320 90 16 chr11 33028454 33028576 -115754896 - L2 LINE L2 -456 2858 2728 1578 163 77 25 chr11 33028594 33028920 -115754552 + MER2 DNA MER2_type 1 343 -1 1373 195 78 67 chr11 33028931 33029382 -115754090 + LTR16A1 LTR ERVL 1 456 -1 312 91 0 0 chr11 33029650 33029694 -115753778 + (CAGC)n Simple_repeat Simple_repeat 2 45 0 276 239 177 35 chr11 33029712 33029825 -115753647 - L2 LINE L2 -7 3306 3178 1248 102 30 5 chr11 33029976 33030173 -115753299 - THE1C-int LTR MaLR -1378 202 1 2163 145 11 21 chr11 33030173 33030552 -115752920 - THE1C LTR MaLR 0 375 1 2007 104 49 11 chr11 33030933 33031220 -115752252 - AluSg SINE Alu -12 298 1 1815 113 0 92 chr11 33031342 33031670 -115751802 + MER4A LTR ERV1 367 664 0 2259 113 0 0 chr11 33033429 33033731 -115749741 - AluSc SINE Alu -7 302 1 336 234 43 0 chr11 33033731 33033817 -115749655 - MIR SINE MIR -94 168 76 215 271 75 75 chr11 33034053 33034160 -115749312 - MIR SINE MIR -108 154 48 204 125 0 0 chr11 33036646 33036678 -115746794 + L2 LINE L2 3272 3303 -10 313 211 18 0 chr11 33036783 33036840 -115746632 + L2 LINE L2 3214 3271 -1 24 0 0 0 chr11 33040255 33040279 -115743193 + AT_rich Low_complexity Low_complexity 1 24 0 27 62 0 0 chr11 33040405 33040453 -115743019 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr11 33040657 33040678 -115742794 + AT_rich Low_complexity Low_complexity 1 21 0 207 69 0 0 chr11 33041068 33041097 -115742375 + (CAAAAA)n Simple_repeat Simple_repeat 1 29 0 738 322 13 9 chr11 33041566 33041799 -115741673 - MIR SINE MIR -27 235 2 507 245 39 0 chr11 33042093 33042195 -115741277 - MER81 DNA DNA -8 106 1 21 36 0 0 chr11 33042331 33042359 -115741113 + AT_rich Low_complexity Low_complexity 1 28 0 288 53 0 0 chr11 33042714 33042752 -115740720 + (TG)n Simple_repeat Simple_repeat 1 38 0 226 322 78 26 chr11 33043535 33043650 -115739822 + MLT1K LTR MaLR 3 123 -465 25 0 0 0 chr11 33043684 33043709 -115739763 + AT_rich Low_complexity Low_complexity 1 25 0 2162 100 37 3 chr11 33043884 33044183 -115739289 - AluY SINE Alu -2 309 1 503 216 144 0 chr11 33045809 33045934 -115737538 - MIR SINE MIR -2 260 118 2283 169 50 23 chr11 33045969 33046406 -115737066 + MLT2B1 LTR ERVL 1 449 -71 810 142 8 15 chr11 33046449 33046583 -115736889 + FLAM_C SINE Alu 1 133 -10 48 18 0 0 chr11 33046594 33046649 -115736823 + AT_rich Low_complexity Low_complexity 1 55 0 258 62 0 0 chr11 33046649 33046681 -115736791 + MLT2B1 LTR ERVL 476 507 -8 275 290 36 21 chr11 33046685 33046878 -115736594 - L1MEc LINE L1 -4178 2218 2023 280 281 24 12 chr11 33047005 33047087 -115736385 - L1MEc LINE L1 -5767 438 356 24 53 0 0 chr11 33047107 33047145 -115736327 + AT_rich Low_complexity Low_complexity 1 38 0 201 94 0 0 chr11 33047372 33047404 -115736068 + (CAAAAA)n Simple_repeat Simple_repeat 1 32 0 1403 187 4 16 chr11 33047949 33048200 -115735272 - MLT1E1 LTR MaLR -2 652 405 906 189 0 6 chr11 33048276 33048440 -115735032 - MLT1E1 LTR MaLR -402 252 90 2384 64 0 58 chr11 33048882 33049211 -115734261 - AluY SINE Alu -1 310 1 30376 29 15 1 chr11 33049230 33055256 -115728216 - L1HS LINE L1 0 6155 2 22 0 0 0 chr11 33055322 33055344 -115728128 + AT_rich Low_complexity Low_complexity 1 22 0 1398 246 103 13 chr11 33056008 33056456 -115727016 + MLT1L LTR MaLR 121 608 -7 22 35 0 0 chr11 33058040 33058069 -115725403 + AT_rich Low_complexity Low_complexity 1 29 0 523 250 0 112 chr11 33060625 33060739 -115722733 + MIR SINE MIR 68 193 -69 189 0 0 0 chr11 33060739 33060760 -115722712 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2252 85 0 3 chr11 33060762 33061045 -115722427 - AluSp SINE Alu -31 282 1 523 250 0 112 chr11 33061045 33061123 -115722349 + MIR SINE MIR 194 241 -21 2147 113 0 7 chr11 33061313 33061605 -115721867 - AluSx SINE Alu -22 290 1 2275 74 0 46 chr11 33062092 33062415 -115721057 + AluY SINE Alu 1 308 -3 261 0 0 0 chr11 33062521 33062550 -115720922 + (T)n Simple_repeat Simple_repeat 1 29 0 647 229 22 49 chr11 33062784 33062967 -115720505 + MLT1K LTR MaLR 377 554 -34 38185 83 8 7 chr11 33062970 33069110 -115714362 - L1PA6 LINE L1 -1 6153 11 519 145 0 13 chr11 33069236 33069312 -115714160 - Charlie3 DNA MER1_type -8 2702 2628 863 286 91 48 chr11 33069569 33070138 -115713334 - L2 LINE L2 -45 3268 2670 931 251 57 22 chr11 33070219 33070679 -115712793 + MLT1J LTR MaLR 1 501 -10 1609 180 29 0 chr11 33070962 33071234 -115712238 + AluJo SINE Alu 1 280 -32 252 0 0 0 chr11 33071234 33071262 -115712210 + (CAAT)n Simple_repeat Simple_repeat 4 31 0 628 268 131 77 chr11 33072091 33072461 -115711011 + MLT1J LTR MaLR 1 442 -69 795 161 37 50 chr11 33072754 33073052 -115710420 + MLT1A1 LTR MaLR 1 365 0 423 296 19 0 chr11 33073150 33073258 -115710214 + L2 LINE L2 3200 3309 -4 189 102 0 61 chr11 33073911 33073960 -115709512 + (GGAGA)n Simple_repeat Simple_repeat 2 47 0 1796 183 17 40 chr11 33074056 33074456 -115709016 + MLT2D LTR ERVL 1 490 -30 513 0 0 0 chr11 33074958 33075015 -115708457 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 1417 167 22 97 chr11 33075015 33075386 -115708086 - MER7A DNA MER2_type -4 342 2 297 0 0 0 chr11 33075388 33075421 -115708051 + (CA)n Simple_repeat Simple_repeat 2 34 0 249 57 29 0 chr11 33075427 33075462 -115708010 + MLT2D LTR ERVL 379 414 0 467 277 139 12 chr11 33075894 33076060 -115707412 + MIR SINE MIR 65 251 -11 1139 200 0 28 chr11 33076559 33076774 -115706698 + AluJo SINE Alu 1 209 -103 648 171 9 9 chr11 33076780 33076891 -115706581 + FRAM SINE Alu 34 144 -32 2243 117 0 0 chr11 33076891 33077182 -115706290 - AluSp SINE Alu -22 291 1 2002 134 0 3 chr11 33077212 33077536 -115705936 + AluSx SINE Alu 1 323 0 899 176 18 0 chr11 33078009 33078174 -115705298 + MIR SINE MIR 12 179 -83 421 267 0 19 chr11 33078267 33078372 -115705100 + Charlie2 DNA MER1_type 46 148 -2634 738 203 154 45 chr11 33078588 33078899 -115704573 + Charlie2 DNA MER1_type 2274 2618 -244 562 236 60 107 chr11 33079090 33079475 -115703997 + L1MC5 LINE L1 6844 7210 -751 295 229 101 46 chr11 33079639 33079748 -115703724 + L1MC5 LINE L1 7276 7390 -571 386 266 93 66 chr11 33079752 33079804 -115703668 + L1MC5 LINE L1 7474 7523 -438 2047 76 0 15 chr11 33079804 33080068 -115703404 + AluSg SINE Alu 50 309 -1 386 266 93 66 chr11 33080068 33080455 -115703017 + L1MC5 LINE L1 7523 7925 -36 815 214 68 5 chr11 33080465 33080671 -115702801 + Charlie2 DNA MER1_type 2637 2855 -7 185 290 86 21 chr11 33082950 33083043 -115700429 - L2 LINE L2 0 3272 3174 303 274 18 92 chr11 33083235 33083293 -115700179 - L1ME4a LINE L1 -175 5946 5885 700 187 0 8 chr11 33083293 33083427 -115700045 + FLAM_C SINE Alu 1 133 0 303 274 18 92 chr11 33083427 33083532 -115699940 - L1ME4a LINE L1 -236 5885 5795 344 332 85 27 chr11 33083541 33083800 -115699672 - L1ME4a LINE L1 -387 5734 5461 31 44 0 0 chr11 33083828 33083873 -115699599 + AT_rich Low_complexity Low_complexity 1 45 0 25 0 0 0 chr11 33083911 33083936 -115699536 + AT_rich Low_complexity Low_complexity 1 25 0 180 219 0 0 chr11 33086001 33086042 -115697430 - L2 LINE L2 -78 3194 3154 2415 76 0 0 chr11 33087581 33087883 -115695589 + AluSc SINE Alu 1 302 -7 2206 117 0 3 chr11 33089137 33089444 -115694028 - AluSx SINE Alu -6 306 1 21600 23 6 0 chr11 33089832 33093171 -115690301 + L1PA3 LINE L1 2809 6153 -2 191 230 122 138 chr11 33093203 33093399 -115690073 + MIR3 SINE MIR 2 194 -14 237 353 69 0 chr11 33093511 33093613 -115689859 + MIR SINE MIR 117 225 -37 1727 130 59 25 chr11 33093943 33094265 -115689207 - MER44D DNA MER2_type -6 603 1 2190 103 3 3 chr11 33095065 33095356 -115688116 - AluSx SINE Alu -21 291 1 1981 180 44 15 chr11 33097426 33097832 -115685640 + MER47B DNA MER2_type 1 418 0 288 352 94 8 chr11 33098663 33098791 -115684681 + L2 LINE L2 3134 3272 0 22 0 0 0 chr11 33099564 33099586 -115683886 + AT_rich Low_complexity Low_complexity 1 22 0 774 243 153 0 chr11 33099587 33099809 -115683663 - MIR SINE MIR 0 262 7 2229 176 9 40 chr11 33100217 33100589 -115682883 - LOR1b LTR ERV1 0 461 104 1826 176 0 10 chr11 33100589 33100902 -115682570 + AluJb SINE Alu 1 310 -2 2229 176 9 40 chr11 33100902 33100973 -115682499 - LOR1b LTR ERV1 -357 104 32 884 171 30 0 chr11 33101156 33101320 -115682152 + MER33 DNA MER1_type 1 169 -155 315 274 39 67 chr11 33101494 33101673 -115681799 + L1MC5 LINE L1 7461 7634 -327 261 0 0 0 chr11 33102518 33102547 -115680925 + (CCA)n Simple_repeat Simple_repeat 1 29 0 297 239 168 76 chr11 33102639 33102821 -115680651 + MIR SINE MIR 19 206 -56 326 247 51 10 chr11 33104612 33104774 -115678698 + MIR SINE MIR 15 238 -24 782 149 58 0 chr11 33104775 33104929 -115678543 + MER33 DNA MER1_type 15 177 -147 505 234 68 37 chr11 33104929 33105148 -115678324 - L1MCa LINE L1 -5269 1338 906 236 154 19 0 chr11 33105165 33105217 -115678255 + MER33 DNA MER1_type 150 202 -122 2292 107 3 0 chr11 33105390 33105698 -115677774 - AluSq SINE Alu -4 309 1 229 313 16 0 chr11 33105972 33106036 -115677436 + L3 LINE CR1 1502 1566 -11 474 273 41 16 chr11 33106222 33106343 -115677129 - L1ME LINE L1 -578 5586 5463 503 168 142 9 chr11 33106344 33106457 -115677015 - MER20 DNA MER1_type -2 217 90 4273 234 104 18 chr11 33106508 33108202 -115675270 - L1M2 LINE L1 -730 5448 3624 448 296 41 115 chr11 33108205 33108597 -115674875 - HAL1 LINE L1 -2097 410 48 951 177 0 0 chr11 33108607 33108754 -115674718 + FRAM SINE Alu 1 146 -30 431 299 84 57 chr11 33109045 33109413 -115674059 - L2 LINE L2 -1608 1706 1329 2035 123 35 59 chr11 33109522 33109895 -115673577 + THE1B LTR MaLR 1 364 0 229 342 70 32 chr11 33110068 33110255 -115673217 - MIR SINE MIR -40 222 29 310 303 156 8 chr11 33112020 33112142 -115671330 - MIR SINE MIR -28 234 95 281 206 82 27 chr11 33112579 33112652 -115670820 + MIR3 SINE MIR 115 191 -17 1983 166 3 20 chr11 33112705 33113048 -115670424 + MER1B DNA MER1_type 1 337 0 2207 100 0 39 chr11 33113335 33113645 -115669827 - AluSx SINE Alu -14 298 1 705 212 125 5 chr11 33114243 33114427 -115669045 - L1ME2 LINE L1 -9 6155 5950 2128 123 0 7 chr11 33115151 33115452 -115668020 - AluSx SINE Alu -13 299 1 205 277 0 84 chr11 33115606 33115689 -115667783 - L2 LINE L2 0 3313 3238 589 248 143 11 chr11 33115763 33115974 -115667498 + MIR SINE MIR 5 228 -34 3306 218 69 23 chr11 33116213 33117038 -115666434 - MER21B LTR ERV1 0 863 1 211 320 89 76 chr11 33117829 33118054 -115665418 + L2 LINE L2 3037 3264 -8 21937 147 39 9 chr11 33119318 33123638 -115659834 + L1MA3 LINE L1 11 4458 -3107 3530 182 24 24 chr11 33123622 33123693 -115659779 + L1MA3 LINE L1 4855 4925 -2640 * 2057 129 16 3 chr11 33123693 33123996 -115659476 + AluSx SINE Alu 1 307 -5 2264 106 0 3 chr11 33124001 33124302 -115659170 + AluSc SINE Alu 1 300 -9 3530 182 24 24 chr11 33124302 33124933 -115658539 + L1MA3 LINE L1 4928 5563 -2002 * 6279 114 35 10 chr11 33124929 33125978 -115657494 + L1MA3 LINE L1 6649 7722 -2 505 205 92 76 chr11 33125994 33126179 -115657293 - MER115 DNA AcHobo -1 692 505 569 181 0 0 chr11 33126181 33126275 -115657197 + MLT1A1 LTR MaLR 74 167 -198 931 129 0 0 chr11 33126280 33126412 -115657060 - AluSx SINE Alu -7 305 174 737 140 0 0 chr11 33126412 33126519 -115656953 - AluSx SINE Alu -201 112 6 724 164 242 6 chr11 33126523 33126688 -115656784 + MLT1A1 LTR MaLR 162 365 0 820 215 71 124 chr11 33126967 33127362 -115656110 + MLT1A2 LTR MaLR 1 374 0 24 32 0 0 chr11 33127367 33127398 -115656074 + AT_rich Low_complexity Low_complexity 1 31 0 3300 209 12 5 chr11 33127407 33128048 -115655424 + MER82 DNA MER2_type 7 652 -1 630 291 99 18 chr11 33128196 33128478 -115654994 + L1M4 LINE L1 2906 3210 -2936 3775 119 47 28 chr11 33128505 33129142 -115654330 - L1PA15 LINE L1 -61 6104 5456 23 0 0 0 chr11 33129150 33129173 -115654299 + AT_rich Low_complexity Low_complexity 1 23 0 394 270 52 26 chr11 33129244 33129359 -115654113 - L2 LINE L2 -1 3271 3154 254 361 72 0 chr11 33129367 33129464 -115654008 - MIR SINE MIR -111 151 48 716 319 64 73 chr11 33130200 33130851 -115652621 + L2 LINE L2 2618 3271 -1 2115 118 34 0 chr11 33131377 33131673 -115651799 - AluSg SINE Alu -4 306 1 2281 96 7 0 chr11 33132982 33133283 -115650189 - AluSg SINE Alu -7 303 1 4719 66 5 0 chr11 33133313 33133922 -115649550 - L1PA8 LINE L1 0 6172 5561 5395 94 7 2 chr11 33133923 33134862 -115648610 + L1PA8 LINE L1 4618 5559 -613 182 278 7 20 chr11 33134972 33135123 -115648349 + CT-rich Low_complexity Low_complexity 2 150 0 2830 140 45 25 chr11 33135567 33136082 -115647390 - Tigger3(Golem) DNA MER2_type -1 3028 2504 1521 203 4 7 chr11 33136096 33136377 -115647095 - AluJo SINE Alu -30 282 3 1043 203 11 0 chr11 33136399 33136576 -115646896 - Tigger3(Golem) DNA MER2_type -2848 181 3 351 0 0 0 chr11 33136695 33136734 -115646738 + (TG)n Simple_repeat Simple_repeat 2 40 0 4448 173 18 8 chr11 33136782 33137352 -115646120 - LTR39 LTR ERV1 0 783 201 4103 86 9 2 chr11 33137352 33137902 -115645570 - MER41A LTR ERV1 0 554 1 4448 173 18 8 chr11 33137902 33138106 -115645366 - LTR39 LTR ERV1 -582 201 1 2332 92 10 3 chr11 33138637 33138942 -115644530 - AluSx SINE Alu -5 307 1 22 0 0 0 chr11 33138945 33138967 -115644505 + AT_rich Low_complexity Low_complexity 1 22 0 1258 200 91 62 chr11 33139004 33139056 -115644416 - MSTD LTR MaLR 0 396 347 1221 199 92 15 chr11 33139056 33139328 -115644144 - AluJo SINE Alu -17 295 3 1258 200 91 62 chr11 33139328 33139660 -115643812 - MSTD LTR MaLR -49 347 1 1583 171 8 0 chr11 33141023 33141274 -115642198 + AluJb SINE Alu 48 300 -12 207 0 0 0 chr11 33141274 33141297 -115642175 + (TA)n Simple_repeat Simple_repeat 2 24 0 698 238 87 0 chr11 33141815 33141987 -115641485 - MER5A DNA MER1_type -2 187 1 2021 226 116 42 chr11 33142841 33143445 -115640027 - L1ME2 LINE L1 -24 6140 5477 2082 137 3 10 chr11 33143445 33143759 -115639713 - AluSx SINE Alu 0 312 1 2021 226 116 42 chr11 33143759 33143843 -115639629 - L1ME2 LINE L1 -687 5477 5401 710 240 185 14 chr11 33144683 33144970 -115638502 - L2 LINE L2 -1 3312 2977 1131 238 143 7 chr11 33145277 33145698 -115637774 - L1ME2 LINE L1 -915 5231 4754 1681 209 55 34 chr11 33146194 33146688 -115636784 - MLT1D LTR MaLR -1 504 1 26 0 0 0 chr11 33146965 33146991 -115636481 + AT_rich Low_complexity Low_complexity 1 26 0 2431 69 0 7 chr11 33148150 33148455 -115635017 - AluY SINE Alu -8 303 1 25 31 0 0 chr11 33149147 33149179 -115634293 + AT_rich Low_complexity Low_complexity 1 32 0 22 56 0 0 chr11 33150056 33150092 -115633380 + AT_rich Low_complexity Low_complexity 1 36 0 275 259 27 45 chr11 33152216 33152328 -115631144 + L3b LINE CR1 1319 1428 -155 272 318 91 19 chr11 33155429 33155583 -115627889 - MIR SINE MIR -49 213 49 29 28 0 0 chr11 33156429 33156465 -115627007 + AT_rich Low_complexity Low_complexity 1 36 0 429 220 162 28 chr11 33157984 33158070 -115625402 - L1ME3A LINE L1 -25 6139 6066 2289 105 0 0 chr11 33158070 33158375 -115625097 - AluSx SINE Alu -7 305 1 429 220 162 28 chr11 33158375 33158500 -115624972 - L1ME3A LINE L1 -98 6066 5892 26 0 0 0 chr11 33158909 33158935 -115624537 + AT_rich Low_complexity Low_complexity 1 26 0 228 111 0 0 chr11 33159775 33159811 -115623661 + (T)n Simple_repeat Simple_repeat 1 36 0 1516 185 49 51 chr11 33160207 33160596 -115622876 - MLT1B LTR MaLR -2 388 1 22 0 0 0 chr11 33161622 33161644 -115621828 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr11 33162584 33162629 -115620843 + AT_rich Low_complexity Low_complexity 1 45 0 517 175 8 56 chr11 33162667 33162793 -115620679 + FLAM_C SINE Alu 21 140 -3 25 0 0 0 chr11 33162847 33162872 -115620600 + AT_rich Low_complexity Low_complexity 1 25 0 30 27 0 0 chr11 33165375 33165412 -115618060 + AT_rich Low_complexity Low_complexity 1 37 0 2094 126 0 0 chr11 33165839 33166133 -115617339 - AluSx SINE Alu -18 294 1 858 132 8 0 chr11 33166142 33166263 -115617209 - AluSq/x SINE Alu -191 122 1 1876 137 22 29 chr11 33166342 33166656 -115616816 + AluSx SINE Alu 1 312 0 527 83 0 48 chr11 33170284 33170368 -115613104 + MADE1 DNA Mariner 1 80 0 346 201 52 52 chr11 33170411 33170565 -115612907 - L1ME3A LINE L1 -2401 5407 5254 2146 113 3 0 chr11 33171251 33171544 -115611928 - AluSx SINE Alu -18 294 1 2206 125 26 6 chr11 33171940 33172292 -115611180 - MER46B DNA MER2_type 0 236 3 22 0 0 0 chr11 33172341 33172363 -115611109 + AT_rich Low_complexity Low_complexity 1 22 0 2839 217 113 11 chr11 33172409 33173502 -115609970 - L1ME1 LINE L1 -4 6231 5032 393 210 107 107 chr11 33173500 33173743 -115609729 - L1ME1 LINE L1 -4194 2202 1960 * 1746 305 126 26 chr11 33173748 33175184 -115608288 - L1ME1 LINE L1 -4781 1615 37 2200 112 0 0 chr11 33175209 33175503 -115607969 - AluSx SINE Alu -18 294 1 232 253 58 11 chr11 33175699 33175786 -115607686 + L1MC/D LINE L1 5687 5777 -2031 27 49 0 0 chr11 33175898 33175939 -115607533 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr11 33176507 33176528 -115606944 + AT_rich Low_complexity Low_complexity 1 21 0 325 293 171 24 chr11 33178873 33179037 -115604435 + MIR SINE MIR 4 191 -71 1606 102 40 0 chr11 33179392 33179618 -115603854 - AluSg/x SINE Alu -2 310 76 484 81 0 0 chr11 33180540 33180602 -115602870 - Alu SINE Alu -15 297 236 180 332 125 61 chr11 33180869 33181245 -115602227 + L2 LINE L2 2341 2740 -574 445 211 29 19 chr11 33181270 33181374 -115602098 - FLAM_C SINE Alu -15 128 24 1186 145 42 10 chr11 33181692 33181885 -115601587 - MER3 DNA MER1_type -1 208 10 209 207 52 35 chr11 33181910 33181968 -115601504 + L2 LINE L2 3214 3272 0 2095 123 3 3 chr11 33182841 33183149 -115600323 + AluSx SINE Alu 3 310 -2 845 231 16 0 chr11 33185772 33185954 -115597518 - MER58A DNA MER1_type -2 222 38 3092 238 75 48 chr11 33185959 33187047 -115596425 - L2 LINE L2 -500 2814 1655 2211 74 0 3 chr11 33187556 33187864 -115595608 - AluSq SINE Alu 0 307 1 503 280 133 18 chr11 33188711 33188936 -115594536 + MIR SINE MIR 3 253 -9 452 127 14 0 chr11 33189077 33189148 -115594324 + L1MA6 LINE L1 6067 6138 -162 778 152 15 0 chr11 33189149 33189281 -115594191 + AluSg/x SINE Alu 168 301 -11 941 164 0 6 chr11 33189281 33189458 -115594014 + L1MA6 LINE L1 6125 6300 0 1824 191 91 9 chr11 33190426 33190877 -115592595 - L1MC4a LINE L1 -223 7585 7098 780 194 61 6 chr11 33191551 33191716 -115591756 + FRAM SINE Alu 1 174 -2 22 0 0 0 chr11 33194305 33194327 -115589145 + AT_rich Low_complexity Low_complexity 1 22 0 880 111 0 0 chr11 33194431 33194548 -115588924 - AluSg/x SINE Alu -21 289 173 1747 157 7 3 chr11 33194693 33194980 -115588492 + AluJb SINE Alu 1 288 -24 396 302 26 0 chr11 33195808 33195924 -115587548 + L2 LINE L2 3192 3310 -3 472 213 120 0 chr11 33196127 33196235 -115587237 + FLAM_C SINE Alu 1 121 -22 2363 125 3 3 chr11 33196292 33196652 -115586820 + MER46B DNA MER2_type 1 235 -1 1802 179 0 3 chr11 33196851 33197153 -115586319 + AluSx SINE Alu 1 301 -11 608 275 57 36 chr11 33197477 33197724 -115585748 + MIR SINE MIR 11 262 0 237 373 49 10 chr11 33198516 33198618 -115584854 + MIR SINE MIR 20 125 -83 21 0 0 0 chr11 33198787 33198808 -115584664 + AT_rich Low_complexity Low_complexity 1 21 0 316 289 48 19 chr11 33198999 33199103 -115584369 - MIR SINE MIR -91 171 65 9789 151 32 13 chr11 33199111 33201878 -115581594 + L1MA5 LINE L1 3488 6300 0 250 146 0 0 chr11 33201979 33202020 -115581452 + L1MC4 LINE L1 6504 6544 -1498 1918 244 183 55 chr11 33202062 33203161 -115580311 + L1MC4 LINE L1 6654 7892 -150 251 259 46 28 chr11 33203235 33203343 -115580129 + L1MC4 LINE L1 7904 8013 -29 808 257 99 37 chr11 33203392 33203664 -115579808 - L2 LINE L2 -1 3312 3024 1424 198 33 16 chr11 33203667 33203970 -115579502 - L1M4 LINE L1 -559 5615 5308 346 278 97 75 chr11 33204040 33204412 -115579060 + L1MEd LINE L1 707 1068 -5051 688 304 45 35 chr11 33204431 33204940 -115578532 + L1MEd LINE L1 1156 1669 -4641 2290 93 6 0 chr11 33204951 33205262 -115578210 + AluSp SINE Alu 1 313 0 4115 123 33 1 chr11 33205401 33206076 -115577396 + L1MA5 LINE L1 5601 6296 -4 384 252 175 26 chr11 33206076 33206265 -115577207 - MER54A LTR ERVL -283 361 147 24 85 0 0 chr11 33206292 33206351 -115577121 + AT_rich Low_complexity Low_complexity 1 59 0 299 398 41 0 chr11 33206354 33206525 -115576947 - L2 LINE L2 -1733 1581 1404 2234 180 62 17 chr11 33206591 33207074 -115576398 - MLT1D LTR MaLR 0 505 1 495 260 110 27 chr11 33207096 33207242 -115576230 + MER5A DNA MER1_type 2 159 -30 325 89 0 54 chr11 33207610 33207666 -115575806 - MIR SINE MIR -55 207 155 1196 78 0 0 chr11 33207670 33207854 -115575618 - AluY SINE Alu 0 313 130 207 0 0 0 chr11 33207854 33207877 -115575595 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2445 52 0 0 chr11 33207879 33208167 -115575305 - AluY SINE Alu -23 288 1 445 310 9 0 chr11 33208177 33208293 -115575179 - MIR SINE MIR -118 144 28 193 167 37 0 chr11 33208645 33208699 -115574773 + (TA)n Simple_repeat Simple_repeat 2 57 0 897 157 88 13 chr11 33209363 33209522 -115573950 + AluJb SINE Alu 129 299 -13 255 259 24 24 chr11 33209698 33209783 -115573689 + MER5A DNA MER1_type 70 154 -35 403 221 0 0 chr11 33210266 33210352 -115573120 - FRAM/FAM SINE Alu -80 86 1 22 0 0 0 chr11 33210819 33210841 -115572631 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr11 33210915 33210950 -115572522 + AT_rich Low_complexity Low_complexity 1 35 0 30 27 0 0 chr11 33211315 33211352 -115572120 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr11 33211640 33211662 -115571810 + AT_rich Low_complexity Low_complexity 1 22 0 773 217 111 1 chr11 33214350 33214540 -115568932 + MER33 DNA MER1_type 1 198 -88 26 30 0 0 chr11 33216337 33216370 -115567102 + AT_rich Low_complexity Low_complexity 1 33 0 2667 257 76 23 chr11 33217041 33218128 -115565344 + L1ME3A LINE L1 5001 6144 -26 1085 268 60 31 chr11 33219103 33219555 -115563917 - L1MC4a LINE L1 -1817 5991 5527 370 304 20 0 chr11 33221058 33221169 -115562303 + MIR SINE MIR 38 151 -57 637 262 86 90 chr11 33221390 33221913 -115561559 + L1ME3A LINE L1 5643 6166 -4 24 67 0 0 chr11 33221913 33221958 -115561514 + AT_rich Low_complexity Low_complexity 1 45 0 2299 67 0 3 chr11 33223688 33224015 -115559457 - AluY SINE Alu 0 326 1 2130 104 0 0 chr11 33225023 33225303 -115558169 + AluSc SINE Alu 14 293 -16 667 244 212 37 chr11 33225556 33225966 -115557506 + MLT1D LTR MaLR 24 505 0 3378 188 35 9 chr11 33226017 33226694 -115556778 + MLT1D-int LTR MaLR 109 803 -568 6513 145 68 31 chr11 33226698 33227919 -115555553 - Tigger1 DNA MER2_type -1152 1266 1 2480 127 3 11 chr11 33227967 33228345 -115555127 - THE1C LTR MaLR 0 375 1 9748 111 29 42 chr11 33228345 33229466 -115554006 - THE1C-int LTR MaLR 0 1580 485 2259 81 3 14 chr11 33229466 33229762 -115553710 - AluY SINE Alu -18 293 1 9748 111 29 42 chr11 33229762 33230241 -115553231 - THE1C-int LTR MaLR -1095 485 1 779 132 0 69 chr11 33230241 33230385 -115553087 - THE1C LTR MaLR 0 375 242 2993 166 56 31 chr11 33230427 33231434 -115552038 + L1MB4 LINE L1 4726 5784 -396 189 0 0 0 chr11 33231434 33231455 -115552017 + (TG)n Simple_repeat Simple_repeat 2 22 0 247 28 0 0 chr11 33231501 33231537 -115551935 - L1PA3 LINE L1 -3 6152 6117 372 209 29 33 chr11 33231555 33231883 -115551589 + (TATAA)n Simple_repeat Simple_repeat 1 326 0 289 182 18 18 chr11 33231883 33231938 -115551534 + Tigger5 DNA MER2_type 1 55 -2268 * 588 171 38 0 chr11 33231930 33232035 -115551437 + Tigger5 DNA MER2_type 2215 2323 0 1236 208 47 52 chr11 33232035 33232270 -115551202 + L1MB4 LINE L1 5791 6025 -155 2264 74 34 3 chr11 33232270 33232567 -115550905 - AluSc SINE Alu -2 307 2 1236 208 47 52 chr11 33232567 33232715 -115550757 + L1MB4 LINE L1 6025 6172 -8 184 272 304 22 chr11 33233143 33233367 -115550105 - L3 LINE CR1 -154 1423 1137 539 269 123 40 chr11 33233481 33233708 -115549764 + MIR SINE MIR 3 248 -14 2156 85 3 3 chr11 33233902 33234214 -115549258 + AluY SINE Alu 1 312 0 920 189 142 13 chr11 33234421 33234654 -115548818 + MER58B DNA MER1_type 78 340 -1 396 0 0 0 chr11 33234757 33234801 -115548671 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 310 290 87 51 chr11 33235062 33235200 -115548272 + HAL1 LINE L1 811 953 -1554 291 93 0 0 chr11 33235404 33235447 -115548025 + (CA)n Simple_repeat Simple_repeat 1 43 0 1090 237 14 0 chr11 33235541 33235756 -115547716 + MER58A DNA MER1_type 1 218 -6 1019 215 5 33 chr11 33235770 33235984 -115547488 - MER3 DNA MER1_type 0 209 2 1500 200 121 6 chr11 33236066 33236421 -115547051 + MSTD LTR MaLR 1 396 0 1858 145 62 0 chr11 33236490 33236609 -115546863 + AluSx SINE Alu 1 111 -201 369 0 0 0 chr11 33236609 33236650 -115546822 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 1858 145 62 0 chr11 33236650 33236820 -115546652 + AluSx SINE Alu 111 308 -4 433 243 88 69 chr11 33237980 33238413 -115545059 + L1M4 LINE L1 2876 3316 -2830 693 264 13 12 chr11 33238436 33238657 -115544815 + L1ME3A LINE L1 11 233 -5837 1151 261 69 19 chr11 33238715 33239604 -115543868 + L1ME3A LINE L1 4746 5826 -278 285 182 171 0 chr11 33239580 33239668 -115543804 + L1MA6 LINE L1 5803 5905 -329 * 239 336 9 0 chr11 33239677 33239784 -115543688 + L1ME3A LINE L1 5862 5969 -135 4372 152 53 30 chr11 33240044 33240885 -115542587 + Tigger2 DNA MER2_type 1858 2718 0 2206 93 0 7 chr11 33241045 33241347 -115542125 - AluY SINE Alu -11 300 1 2293 107 0 0 chr11 33241497 33241806 -115541666 + AluSc SINE Alu 1 309 0 2231 78 0 3 chr11 33241820 33242114 -115541358 + AluY SINE Alu 6 298 -13 1735 154 33 54 chr11 33242349 33242753 -115540719 + L1MA8 LINE L1 5854 6250 -41 1101 84 54 0 chr11 33242829 33242995 -115540477 + L1PA11 LINE L1 6000 6174 0 207 273 55 0 chr11 33246259 33246314 -115537158 + L2 LINE L2 3214 3271 -1 1652 181 10 3 chr11 33248994 33249287 -115534185 + AluJo SINE Alu 1 295 -17 306 73 0 0 chr11 33249811 33249852 -115533620 + (TG)n Simple_repeat Simple_repeat 2 42 0 231 36 0 0 chr11 33249851 33249879 -115533593 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 1436 176 7 62 chr11 33250191 33250481 -115532991 + AluJo SINE Alu 9 282 -30 2141 88 0 10 chr11 33250646 33250943 -115532529 + AluY SINE Alu 1 294 -17 1616 185 14 0 chr11 33251320 33251607 -115531865 - AluJb SINE Alu -19 293 3 1749 131 76 4 chr11 33252006 33252281 -115531191 - AluSx SINE Alu -17 295 1 2095 86 10 14 chr11 33252443 33252735 -115530737 - AluSg SINE Alu -19 291 1 2224 104 3 0 chr11 33252915 33253223 -115530249 - AluSq SINE Alu -4 309 1 23 33 0 0 chr11 33253223 33253253 -115530219 + AT_rich Low_complexity Low_complexity 1 30 0 1872 141 3 53 chr11 33253312 33253432 -115530040 - AluSx SINE Alu -9 303 179 2273 103 0 3 chr11 33253432 33253734 -115529738 + AluSg SINE Alu 1 301 -9 1872 141 3 53 chr11 33253734 33253932 -115529540 - AluSx SINE Alu -133 179 1 2112 100 0 42 chr11 33254352 33254663 -115528809 + AluSx SINE Alu 1 298 -14 210 311 16 0 chr11 33255412 33255473 -115527999 - L3 LINE CR1 -1 1576 1515 680 317 68 28 chr11 33255494 33255819 -115527653 - L3 LINE CR1 -231 1346 1009 429 335 54 34 chr11 33256056 33256295 -115527177 - MIR SINE MIR -14 248 5 769 302 56 16 chr11 33257224 33257656 -115525816 - L1MC4a LINE L1 -1913 5895 5447 1394 192 10 51 chr11 33257677 33257989 -115525483 - AluJo SINE Alu -13 299 1 1027 222 96 20 chr11 33258948 33259440 -115524032 - MLT1E LTR MaLR 0 593 1 1299 148 35 5 chr11 33259602 33259804 -115523668 + AluJb SINE Alu 84 291 -21 887 265 5 0 chr11 33259844 33260033 -115523439 + MER58A DNA MER1_type 35 224 0 607 236 128 12 chr11 33260873 33261062 -115522410 - MIR SINE MIR -10 252 44 661 330 148 51 chr11 33261341 33262824 -115520648 + L2 LINE L2 1336 2961 -353 360 335 89 23 chr11 33263454 33263711 -115519761 - L2 LINE L2 -820 2494 2221 459 96 68 0 chr11 33263875 33263948 -115519524 + Alu SINE Alu 219 296 -15 341 267 35 0 chr11 33263948 33264034 -115519438 + MIR SINE MIR 171 259 -3 193 352 82 15 chr11 33265207 33265403 -115518069 - L2 LINE L2 -1243 2071 1863 840 306 128 10 chr11 33265419 33265818 -115517654 - L3 LINE CR1 -203 1374 929 485 333 140 38 chr11 33266114 33266822 -115516650 - L2 LINE L2 -4 3268 2458 449 223 121 70 chr11 33266827 33266984 -115516488 - MIR SINE MIR -1 261 97 1647 170 46 7 chr11 33267526 33267575 -115515897 - L1PB4 LINE L1 -1 6165 6119 2266 107 0 19 chr11 33267575 33267893 -115515579 - AluSq SINE Alu -1 312 1 1647 170 46 7 chr11 33267893 33268179 -115515293 - L1PB4 LINE L1 -47 6119 5830 2388 59 0 34 chr11 33268183 33268504 -115514968 - AluY SINE Alu -1 310 1 223 312 86 99 chr11 33268504 33268631 -115514841 - L2 LINE L2 -568 2746 2619 2266 46 3 7 chr11 33268631 33268952 -115514520 - AluY SINE Alu 0 320 1 223 312 86 99 chr11 33268952 33269083 -115514389 - L2 LINE L2 -695 2619 2489 240 35 0 0 chr11 33269083 33269112 -115514360 + (TG)n Simple_repeat Simple_repeat 1 29 0 223 312 86 99 chr11 33269112 33269175 -115514297 - L2 LINE L2 -825 2489 2427 23 92 0 0 chr11 33269511 33269576 -115513896 + AT_rich Low_complexity Low_complexity 1 65 0 974 186 67 105 chr11 33270109 33270172 -115513300 - L1ME1 LINE L1 -6 6160 6096 1474 207 0 11 chr11 33270172 33270457 -115513015 - AluJo SINE Alu -25 287 6 974 186 67 105 chr11 33270457 33270737 -115512735 - L1ME1 LINE L1 -70 6096 5830 272 197 16 33 chr11 33270788 33270849 -115512623 - MER2 DNA MER2_type -261 84 25 1308 210 81 73 chr11 33270899 33271158 -115512314 - L1ME1 LINE L1 -335 5831 5576 1895 161 0 0 chr11 33271158 33271466 -115512006 - AluSx SINE Alu 0 310 3 1308 210 81 73 chr11 33271466 33272288 -115511184 - L1ME1 LINE L1 -590 5576 4635 2179 109 143 8 chr11 33272288 33272665 -115510807 - MSTA LTR MaLR 0 428 1 1308 210 81 73 chr11 33272665 33272984 -115510488 - L1ME1 LINE L1 -1531 4635 4320 202 54 27 27 chr11 33272988 33273025 -115510447 + (TATAG)n Simple_repeat Simple_repeat 2 38 0 310 185 27 71 chr11 33273063 33273247 -115510225 + (TATAA)n Simple_repeat Simple_repeat 5 180 0 527 242 51 13 chr11 33273292 33273449 -115510023 - L1ME1 LINE L1 -2001 4145 3983 22 35 0 0 chr11 33273485 33273514 -115509958 + AT_rich Low_complexity Low_complexity 1 29 0 586 247 36 10 chr11 33273522 33273716 -115509756 - L1ME1 LINE L1 -2376 3770 3572 248 290 130 7 chr11 33273760 33273898 -115509574 - L1ME1 LINE L1 -2475 3671 3517 2234 43 43 7 chr11 33273999 33274279 -115509193 + AluY SINE Alu 1 290 -21 800 132 7 29 chr11 33275300 33275436 -115508036 - FLAM_C SINE Alu 0 133 1 21 36 0 0 chr11 33276426 33276454 -115507018 + AT_rich Low_complexity Low_complexity 1 28 0 3676 256 63 66 chr11 33276829 33278131 -115505341 + L1MEc LINE L1 46 1343 -5053 2157 84 0 0 chr11 33278131 33278406 -115505066 - AluY SINE Alu -7 304 30 3676 256 63 66 chr11 33278406 33278827 -115504645 + L1MEc LINE L1 1343 1764 -4632 44064 38 4 1 chr11 33278827 33284961 -115498511 + L1PA3 LINE L1 2 6155 0 451 247 0 45 chr11 33285130 33285191 -115498281 + L1MA10 LINE L1 6188 6250 -84 7657 129 31 6 chr11 33285191 33286459 -115497013 - HSMAR2 DNA Mariner -1 1301 1 451 247 0 45 chr11 33286459 33286551 -115496921 + L1MA10 LINE L1 6250 6334 0 2195 264 169 34 chr11 33286862 33288049 -115495423 + L2 LINE L2 1925 3276 -37 1493 249 41 61 chr11 33288085 33288533 -115494939 + MLT2B1 LTR ERVL 42 481 -39 390 21 0 0 chr11 33288533 33288580 -115494892 + (CA)n Simple_repeat Simple_repeat 1 47 0 1493 249 41 61 chr11 33288580 33288620 -115494852 + MLT2B1 LTR ERVL 481 520 0 3105 131 78 0 chr11 33288638 33289127 -115494345 + MER1A DNA MER1_type 1 527 0 1715 140 24 86 chr11 33289216 33289588 -115493884 - L1MA9 LINE L1 -5 6307 5959 231 350 25 12 chr11 33293381 33293461 -115490011 + MIR SINE MIR 32 112 -150 2218 100 3 10 chr11 33294436 33294737 -115488735 + AluSp SINE Alu 1 299 -14 25 31 0 0 chr11 33294785 33294817 -115488655 + AT_rich Low_complexity Low_complexity 1 32 0 211 265 20 27 chr11 33295448 33295595 -115487877 + (TTATA)n Simple_repeat Simple_repeat 5 150 0 1459 165 56 25 chr11 33295600 33295885 -115487587 + MER7A DNA MER2_type 1 292 -54 2064 128 3 7 chr11 33296281 33296585 -115486887 - AluSq SINE Alu -10 303 1 7179 48 6 0 chr11 33299221 33300873 -115482599 - L1PA5 LINE L1 0 6154 4495 1758 147 4 4 chr11 33300940 33301212 -115482260 + AluSx SINE Alu 24 295 -17 1648 250 66 73 chr11 33301519 33301887 -115481585 - HsTC2a DNA Tc2 -1161 739 377 1465 75 5 16 chr11 33301887 33302074 -115481398 - AluSp SINE Alu -128 185 1 1648 250 66 73 chr11 33302074 33302446 -115481026 - HsTC2a DNA Tc2 -1523 377 4 2359 127 124 5 chr11 33302489 33302907 -115480565 - Tigger1 DNA MER2_type -1 2417 1950 5204 160 34 44 chr11 33302909 33303644 -115479828 + L1PA16 LINE L1 4252 4993 -1173 2321 119 0 0 chr11 33303644 33303956 -115479516 + AluSx SINE Alu 1 312 0 5204 160 34 44 chr11 33303956 33304317 -115479155 + L1PA16 LINE L1 4993 5356 -810 1671 128 97 0 chr11 33304317 33304574 -115478898 + AluSx SINE Alu 8 289 -23 5204 160 34 44 chr11 33304574 33305308 -115478164 + L1PA16 LINE L1 5356 6096 -70 2121 109 0 32 chr11 33305308 33305619 -115477853 - AluSx SINE Alu -11 301 1 5204 160 34 44 chr11 33305619 33305632 -115477840 + L1PA16 LINE L1 6096 6108 -58 2350 101 0 0 chr11 33305632 33305939 -115477533 - AluSg SINE Alu -3 307 1 5204 160 34 44 chr11 33305939 33306010 -115477462 + L1PA16 LINE L1 6108 6164 -2 7605 109 36 3 chr11 33306010 33307165 -115476307 - Tigger1 DNA MER2_type -454 1964 771 195 42 0 0 chr11 33307440 33307464 -115476008 + (TCTA)n Simple_repeat Simple_repeat 1 24 0 1832 141 0 27 chr11 33307559 33307856 -115475616 + AluJo SINE Alu 1 289 -23 575 260 88 11 chr11 33307921 33308102 -115475370 - L1ME1 LINE L1 -12 6154 5960 728 114 0 9 chr11 33308109 33308225 -115475247 - MLT1A2-int LTR MaLR -1256 115 1 1504 240 11 45 chr11 33308225 33308604 -115474868 - MLT1A2 LTR MaLR 0 374 9 343 324 0 0 chr11 33308608 33308710 -115474762 - MLT1A2 LTR MaLR -260 114 13 424 307 0 0 chr11 33308714 33308828 -115474644 - MLT1A2 LTR MaLR -260 114 1 37247 70 5 3 chr11 33309035 33314786 -115468686 + L1PA5 LINE L1 395 6151 -3 201 286 0 0 chr11 33315426 33315489 -115467983 + CT-rich Low_complexity Low_complexity 2 64 0 1405 136 0 26 chr11 33315496 33315724 -115467748 - AluJb SINE Alu -9 303 82 1393 268 157 39 chr11 33315770 33316523 -115466949 - HAL1 LINE L1 -338 2169 1328 1692 183 3 3 chr11 33316594 33316895 -115466577 - AluJb SINE Alu -11 301 1 781 260 91 9 chr11 33316919 33317138 -115466334 + MIR SINE MIR 5 241 -21 614 276 97 31 chr11 33317256 33317575 -115465897 - HAL1 LINE L1 -1417 1090 751 353 328 56 71 chr11 33317687 33318010 -115465462 - HAL1 LINE L1 -1861 646 329 942 184 0 6 chr11 33318280 33318448 -115465024 + AluJo SINE Alu 121 287 -25 703 253 35 5 chr11 33318632 33318830 -115464642 + MER3 DNA MER1_type 2 205 -4 32 26 0 0 chr11 33319024 33319063 -115464409 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr11 33319325 33319348 -115464124 + AT_rich Low_complexity Low_complexity 1 23 0 1803 133 22 0 chr11 33319352 33319666 -115463806 - AluSq SINE Alu 0 320 1 21 0 0 0 chr11 33320270 33320291 -115463181 + AT_rich Low_complexity Low_complexity 1 21 0 1335 158 38 0 chr11 33320654 33320863 -115462609 + AluJo SINE Alu 3 219 -93 242 98 235 0 chr11 33320908 33320959 -115462513 + MER3 DNA MER1_type 147 209 0 * 444 203 0 0 chr11 33320959 33321006 -115462466 - MER3 DNA MER1_type -162 47 1 593 261 100 54 chr11 33321272 33321478 -115461994 + HAL1b LINE L1 344 568 -780 2213 69 7 16 chr11 33321478 33321781 -115461691 - AluY SINE Alu -11 300 1 593 261 100 54 chr11 33321781 33321854 -115461618 + HAL1b LINE L1 568 636 -712 344 253 25 0 chr11 33321945 33322024 -115461448 + L2 LINE L2 3177 3257 -56 846 257 64 55 chr11 33322061 33322548 -115460924 + HAL1b LINE L1 658 1148 -200 323 278 198 0 chr11 33322927 33323089 -115460383 - L1MC4a LINE L1 -1882 5926 5733 408 231 71 101 chr11 33323150 33323388 -115460084 - L1MC4a LINE L1 -529 5633 5403 30 0 0 0 chr11 33323422 33323452 -115460020 + AT_rich Low_complexity Low_complexity 1 30 0 2000 139 0 0 chr11 33323542 33323829 -115459643 + AluSx SINE Alu 1 287 -25 23 54 0 0 chr11 33323829 33323866 -115459606 + AT_rich Low_complexity Low_complexity 1 37 0 234 163 113 62 chr11 33324712 33324792 -115458680 + L2 LINE L2 3121 3204 -109 807 175 34 178 chr11 33324803 33324942 -115458530 + MIR SINE MIR 2 130 -132 377 22 0 0 chr11 33324942 33324988 -115458484 - MADE1 DNA Mariner -34 46 1 807 175 34 178 chr11 33324988 33325095 -115458377 + MIR SINE MIR 130 251 -11 246 261 14 14 chr11 33325120 33325189 -115458283 + L2 LINE L2 3230 3298 -15 3864 190 52 34 chr11 33325227 33325407 -115458065 + L1MB7 LINE L1 4958 5133 -1051 1939 174 97 5 chr11 33325407 33325799 -115457673 - MSTA LTR MaLR 0 428 1 3864 190 52 34 chr11 33325799 33325967 -115457505 + L1MB7 LINE L1 5133 5296 -888 2300 98 3 0 chr11 33325967 33326263 -115457209 + AluY SINE Alu 1 297 -14 3864 190 52 34 chr11 33326263 33327081 -115456391 + L1MB7 LINE L1 5296 6163 -21 1346 148 14 0 chr11 33327100 33327309 -115456163 + AluJo SINE Alu 1 212 -100 354 155 52 0 chr11 33327320 33327436 -115456036 + (TA)n Simple_repeat Simple_repeat 1 122 0 678 280 39 58 chr11 33327963 33328065 -115455407 - MIR SINE MIR -8 254 152 1655 161 40 15 chr11 33328065 33328368 -115455104 - AluJb SINE Alu 0 310 1 678 280 39 58 chr11 33328368 33328520 -115454952 - MIR SINE MIR -110 152 3 2253 77 0 7 chr11 33330945 33331232 -115452240 + AluSg1 SINE Alu 1 285 -24 201 311 54 14 chr11 33331285 33331359 -115452113 + L2 LINE L2 3182 3258 -55 1414 264 91 27 chr11 33331604 33332153 -115451319 + L1MC4a LINE L1 5256 5839 -1969 1850 99 20 0 chr11 33332437 33332689 -115450783 - AluSq SINE Alu -56 257 1 2345 104 0 0 chr11 33332768 33333077 -115450395 - AluSg SINE Alu -1 309 1 1733 187 6 16 chr11 33333321 33333636 -115449836 - AluJb SINE Alu 0 312 1 610 289 171 11 chr11 33333703 33333990 -115449482 + L2 LINE L2 2980 3312 -1 405 0 0 0 chr11 33334308 33334353 -115449119 + (CA)n Simple_repeat Simple_repeat 2 46 0 1679 132 126 26 chr11 33334362 33334703 -115448769 - THE1C LTR MaLR 0 375 1 357 120 0 0 chr11 33334710 33334760 -115448712 - 5S rRNA rRNA -71 50 1 224 283 109 0 chr11 33335472 33335564 -115447908 - MIR SINE MIR -63 199 98 24 53 0 0 chr11 33336234 33336272 -115447200 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr11 33337182 33337208 -115446264 + AT_rich Low_complexity Low_complexity 1 26 0 394 275 58 82 chr11 33339691 33339898 -115443574 - MIR SINE MIR -4 258 57 198 303 15 0 chr11 33340045 33340111 -115443361 + MIR SINE MIR 87 153 -55 363 346 112 5 chr11 33340571 33340759 -115442713 - MIR SINE MIR -35 227 20 24 0 0 0 chr11 33341244 33341268 -115442204 + AT_rich Low_complexity Low_complexity 1 24 0 1581 180 16 74 chr11 33341700 33342078 -115441394 + MLT1A2 LTR MaLR 3 358 -16 745 217 56 123 chr11 33342078 33342469 -115441003 - MLT1A1 LTR MaLR 0 365 1 555 304 8 39 chr11 33342668 33342928 -115440544 - HERVFH21 LTR ERV1 -346 6183 5932 517 31 0 0 chr11 33342922 33342987 -115440485 - HERVFH21 LTR ERV1 -1815 4714 4650 * 6111 194 36 28 chr11 33342991 33344475 -115438997 - HERVFH21 LTR ERV1 -3744 2785 1290 1557 156 3 54 chr11 33344585 33344880 -115438592 + AluJb SINE Alu 17 296 -16 1722 125 45 0 chr11 33345174 33345461 -115438011 - L1PA16 LINE L1 -4 6162 5863 825 269 72 75 chr11 33345633 33345981 -115437491 + L2 LINE L2 2364 2712 -602 937 214 35 0 chr11 33345981 33346182 -115437290 + MER3 DNA MER1_type 2 209 0 825 269 72 75 chr11 33346182 33346316 -115437156 + L2 LINE L2 2712 2845 -469 830 313 79 34 chr11 33346485 33346986 -115436486 - L2 LINE L2 -24 3289 2765 21 0 0 0 chr11 33346986 33347007 -115436465 + AT_rich Low_complexity Low_complexity 1 21 0 228 371 89 5 chr11 33347033 33347235 -115436237 - L2 LINE L2 -1833 1481 1263 189 293 114 49 chr11 33347288 33347411 -115436061 - L2 LINE L2 -2190 1124 994 212 322 28 79 chr11 33347545 33347759 -115435713 - L2 LINE L2 -2654 660 458 292 204 0 97 chr11 33348148 33348241 -115435231 - MER103 DNA DNA -9 157 74 391 211 30 45 chr11 33348392 33348525 -115434947 + HAL1b LINE L1 1200 1330 -18 2136 105 24 7 chr11 33348531 33348825 -115434647 - AluSx SINE Alu -13 299 1 25 31 0 0 chr11 33348952 33348984 -115434488 + AT_rich Low_complexity Low_complexity 1 32 0 2858 213 230 23 chr11 33349027 33350027 -115433445 + L1MC4 LINE L1 6749 8037 -5 184 232 36 36 chr11 33350216 33350272 -115433200 + MIR SINE MIR 206 261 -1 367 285 87 35 chr11 33350733 33350905 -115432567 - MIR SINE MIR -1 261 81 3923 178 62 56 chr11 33350916 33352417 -115431055 + L1MB2 LINE L1 4662 6171 0 3174 183 44 40 chr11 33352564 33353037 -115430435 + L1MB8 LINE L1 5423 5902 -276 1097 218 17 114 chr11 33353037 33353441 -115430031 - MLT1A1 LTR MaLR 0 365 1 3174 183 44 40 chr11 33353441 33353720 -115429752 + L1MB8 LINE L1 5902 6178 0 1091 281 92 16 chr11 33353723 33354146 -115429326 - L2 LINE L2 -1378 1936 1482 1529 194 26 80 chr11 33354173 33354478 -115428994 - MLT1A1 LTR MaLR 0 365 84 1469 106 23 0 chr11 33354478 33354695 -115428777 - L1PA13 LINE L1 0 6163 5942 1529 194 26 80 chr11 33354695 33354775 -115428697 - MLT1A1 LTR MaLR -281 84 1 1722 254 183 29 chr11 33354775 33355492 -115427980 - L2 LINE L2 -1866 1448 622 433 301 6 64 chr11 33356225 33356398 -115427074 - MIR3 SINE MIR -1 207 45 364 325 12 31 chr11 33356693 33356853 -115426619 + MIR SINE MIR 20 176 -86 243 0 0 0 chr11 33358168 33358195 -115425277 + (TA)n Simple_repeat Simple_repeat 1 27 0 22 35 0 0 chr11 33358406 33358435 -115425037 + AT_rich Low_complexity Low_complexity 1 29 0 3590 155 29 7 chr11 33358538 33359009 -115424463 + L1MA8 LINE L1 5164 5657 -634 5528 142 124 9 chr11 33359009 33360113 -115423359 - Tigger3b DNA MER2_type 0 1231 1 3590 155 29 7 chr11 33360113 33360381 -115423091 + L1MA8 LINE L1 5657 5918 -373 21 0 0 0 chr11 33361438 33361459 -115422013 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 33362021 33362042 -115421430 + AT_rich Low_complexity Low_complexity 1 21 0 333 0 0 0 chr11 33363241 33363278 -115420194 + (CA)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr11 33364221 33364242 -115419230 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr11 33365035 33365061 -115418411 + AT_rich Low_complexity Low_complexity 1 26 0 2043 131 7 0 chr11 33365139 33365437 -115418035 - AluSx SINE Alu -12 300 1 1602 203 3 16 chr11 33365466 33365782 -115417690 + AluJo SINE Alu 1 312 0 604 165 110 0 chr11 33367251 33367427 -115416045 - L1M3 LINE L1 -717 5453 5255 494 216 108 16 chr11 33367437 33367631 -115415841 - L1M3 LINE L1 -921 5225 5014 182 288 17 17 chr11 33367900 33367959 -115415513 + L2 LINE L2 3214 3272 0 682 175 50 0 chr11 33368115 33368235 -115415237 + FLAM_C SINE Alu 1 126 -17 191 152 22 0 chr11 33368564 33368610 -115414862 + (CTA)n Simple_repeat Simple_repeat 1 47 0 249 292 52 21 chr11 33368611 33368707 -115414765 - MIR SINE MIR -26 236 138 247 341 92 17 chr11 33368798 33368971 -115414501 - MIR SINE MIR -76 186 1 524 254 270 11 chr11 33370107 33370296 -115413176 - MIR SINE MIR -22 240 3 402 197 231 14 chr11 33370398 33370545 -115412927 + MIR SINE MIR 76 254 -8 379 216 0 40 chr11 33370918 33370992 -115412480 - L2 LINE L2 -43 3270 3200 21 0 0 0 chr11 33371183 33371204 -115412268 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 33372252 33372280 -115411192 + AT_rich Low_complexity Low_complexity 1 28 0 28 61 0 0 chr11 33375038 33375087 -115408385 + AT_rich Low_complexity Low_complexity 1 49 0 25 0 0 0 chr11 33377580 33377605 -115405867 + AT_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr11 33378721 33378753 -115404719 + AT_rich Low_complexity Low_complexity 1 32 0 189 326 23 23 chr11 33383399 33383485 -115399987 - L3 LINE CR1 -533 1044 959 31 44 0 0 chr11 33383531 33383576 -115399896 + AT_rich Low_complexity Low_complexity 1 45 0 235 136 85 0 chr11 33385072 33385131 -115398341 + T-rich Low_complexity Low_complexity 6 69 0 21 0 0 0 chr11 33387410 33387431 -115396041 + AT_rich Low_complexity Low_complexity 1 21 0 205 315 22 67 chr11 33388243 33388332 -115395140 - L2 LINE L2 0 3272 3188 23 68 0 0 chr11 33388861 33388905 -115394567 + AT_rich Low_complexity Low_complexity 1 44 0 552 289 176 47 chr11 33391967 33392330 -115391142 + L2 LINE L2 2896 3305 -8 398 277 97 63 chr11 33392382 33392588 -115390884 - MIR SINE MIR -10 252 40 29 0 0 0 chr11 33392637 33392666 -115390806 + AT_rich Low_complexity Low_complexity 1 29 0 651 303 58 33 chr11 33392668 33392909 -115390563 - MIR SINE MIR -14 248 2 24 53 0 0 chr11 33393859 33393897 -115389575 + AT_rich Low_complexity Low_complexity 1 38 0 2078 121 0 14 chr11 33394505 33394795 -115388677 + AluSx SINE Alu 7 292 -20 21 71 0 0 chr11 33394870 33394912 -115388560 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr11 33395843 33395872 -115387600 + AT_rich Low_complexity Low_complexity 1 29 0 268 313 24 0 chr11 33396334 33396417 -115387055 + L2 LINE L2 3188 3272 0 348 240 176 0 chr11 33397199 33397238 -115386234 + MER58A DNA MER1_type 5 36 -305 198 0 0 0 chr11 33397238 33397260 -115386212 + (TTG)n Simple_repeat Simple_repeat 2 23 0 348 240 176 0 chr11 33397260 33397345 -115386127 + MER58A DNA MER1_type 36 151 -73 225 301 321 5 chr11 33397630 33397839 -115385633 - L3 LINE CR1 -7 1570 1296 26 82 0 0 chr11 33397908 33397969 -115385503 + AT_rich Low_complexity Low_complexity 1 61 0 22 0 0 0 chr11 33398694 33398716 -115384756 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr11 33399292 33399321 -115384151 + AT_rich Low_complexity Low_complexity 1 29 0 189 74 0 0 chr11 33400130 33400157 -115383315 + (TC)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr11 33400406 33400428 -115383044 + AT_rich Low_complexity Low_complexity 1 22 0 2005 134 20 0 chr11 33400447 33400745 -115382727 - AluJb SINE Alu -8 304 1 2069 147 0 0 chr11 33400792 33401099 -115382373 - AluSx SINE Alu -5 307 1 2363 81 0 3 chr11 33401202 33401499 -115381973 + AluSc SINE Alu 1 296 -13 809 147 0 37 chr11 33403274 33403410 -115380062 - FLAM_A SINE Alu -2 131 1 603 0 0 0 chr11 33403462 33403529 -115379943 + (TG)n Simple_repeat Simple_repeat 2 68 0 476 329 57 84 chr11 33403767 33403899 -115379573 + L2 LINE L2 2811 2945 -327 2102 72 59 3 chr11 33403899 33404189 -115379283 - AluSc SINE Alu -3 306 1 476 329 57 84 chr11 33404189 33404530 -115378942 + L2 LINE L2 2945 3271 -1 39 50 0 0 chr11 33405568 33405628 -115377844 + AT_rich Low_complexity Low_complexity 1 60 0 1976 148 10 7 chr11 33407316 33407621 -115375851 + AluJb SINE Alu 1 306 -6 2217 98 3 0 chr11 33407816 33408112 -115375360 - AluSx SINE Alu -3 309 13 1741 160 11 3 chr11 33408120 33408437 -115375035 - AluJo SINE Alu 0 319 1 2444 58 14 0 chr11 33410077 33410369 -115373103 - AluSp SINE Alu -17 296 1 1572 247 136 17 chr11 33410611 33411345 -115372127 + L2 LINE L2 2486 3293 -20 331 306 243 0 chr11 33411477 33411650 -115371822 - MIR SINE MIR -27 235 21 487 138 17 60 chr11 33411725 33411841 -115371631 - Charlie2a DNA MER1_type -42 2820 2710 443 201 243 0 chr11 33411823 33411967 -115371505 - Charlie2a DNA MER1_type -1199 1663 1485 * 271 184 184 71 chr11 33412001 33412099 -115371373 - Charlie2b DNA MER1_type -2114 668 560 * 815 262 71 12 chr11 33412088 33412340 -115371132 - Charlie2b DNA MER1_type -2515 267 1 4930 166 25 73 chr11 33412499 33412973 -115370499 - L1MC1 LINE L1 -6 6607 6112 1685 183 0 14 chr11 33412973 33413263 -115370209 + AluJb SINE Alu 1 286 -26 4930 166 25 73 chr11 33413263 33413300 -115370172 - L1MC1 LINE L1 -501 6112 6075 366 80 0 0 chr11 33413300 33413350 -115370122 + (TG)n Simple_repeat Simple_repeat 1 50 0 4930 166 25 73 chr11 33413350 33414000 -115369472 - L1MC1 LINE L1 -538 6075 5500 993 212 28 24 chr11 33414077 33414130 -115369342 - L1MC1 LINE L1 -1370 5056 5005 2073 157 37 18 chr11 33414130 33414513 -115368959 - MLT1B LTR MaLR 0 390 1 993 212 28 24 chr11 33414513 33414709 -115368763 - L1MC1 LINE L1 -1421 5005 4806 1559 203 24 18 chr11 33414712 33415052 -115368420 - L1MC1 LINE L1 -6080 346 5 23 0 0 0 chr11 33415689 33415712 -115367760 + AT_rich Low_complexity Low_complexity 1 23 0 2398 91 3 0 chr11 33416533 33416841 -115366631 - AluSq SINE Alu -4 309 1 246 345 106 62 chr11 33417421 33417647 -115365825 - L2 LINE L2 -32 3240 3005 22 70 0 0 chr11 33417823 33417866 -115365606 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr11 33418189 33418212 -115365260 + AT_rich Low_complexity Low_complexity 1 23 0 1981 140 0 0 chr11 33419029 33419307 -115364165 - AluSx SINE Alu -34 278 1 596 229 34 72 chr11 33419362 33419655 -115363817 + L1M4 LINE L1 4769 5050 -1096 2227 93 3 3 chr11 33419871 33420171 -115363301 + AluSc SINE Alu 1 300 -9 27 29 0 0 chr11 33420415 33420449 -115363023 + AT_rich Low_complexity Low_complexity 1 34 0 2216 95 3 7 chr11 33420451 33420747 -115362725 + AluSc SINE Alu 1 295 -14 23 68 0 0 chr11 33420932 33420976 -115362496 + AT_rich Low_complexity Low_complexity 1 44 0 596 332 208 14 chr11 33421278 33421399 -115362073 - L2 LINE L2 -498 2816 2720 1730 148 42 0 chr11 33421399 33421682 -115361790 + AluJb SINE Alu 1 295 -17 596 332 208 14 chr11 33421682 33421785 -115361687 - L2 LINE L2 -594 2720 2638 219 69 0 0 chr11 33421785 33421814 -115361658 + (CAT)n Simple_repeat Simple_repeat 2 30 0 596 332 208 14 chr11 33421814 33422155 -115361317 - L2 LINE L2 -676 2638 2140 305 243 61 155 chr11 33422165 33422527 -115360945 - L2 LINE L2 -1282 2032 1705 1290 207 67 11 chr11 33423979 33424264 -115359208 + AluJo SINE Alu 2 302 0 617 279 57 0 chr11 33424482 33424640 -115358832 + MIR SINE MIR 3 169 -93 183 100 0 0 chr11 33424640 33424670 -115358802 + (TGG)n Simple_repeat Simple_repeat 2 31 0 375 320 67 28 chr11 33424842 33425020 -115358452 - MIR SINE MIR -52 210 26 25 0 0 0 chr11 33425222 33425247 -115358225 + AT_rich Low_complexity Low_complexity 1 25 0 219 69 0 0 chr11 33425586 33425615 -115357857 + (T)n Simple_repeat Simple_repeat 1 29 0 387 275 56 155 chr11 33427508 33427882 -115355590 + L2 LINE L2 2935 3271 -1 21049 52 3 4 chr11 33427966 33431434 -115352038 - L1PA5 LINE L1 -8 6146 2685 4534 45 2 0 chr11 33431434 33432006 -115351466 + L1P LINE L1 1961 2533 -3613 202 308 87 29 chr11 33432025 33432129 -115351343 + MIR SINE MIR 69 178 -84 25 0 0 0 chr11 33432588 33432613 -115350859 + AT_rich Low_complexity Low_complexity 1 25 0 1993 138 3 0 chr11 33433220 33433510 -115349962 - AluSx SINE Alu -21 291 1 2348 257 67 49 chr11 33433824 33434759 -115348713 + L1MC4 LINE L1 6648 7599 -443 1020 194 41 99 chr11 33434782 33435159 -115348313 + L1MC4 LINE L1 7648 7783 -2 309 204 15 10 chr11 33435184 33435341 -115348131 - MER46C DNA MER2_type -142 196 1 184 100 50 0 chr11 33436499 33436539 -115346933 + (TA)n Simple_repeat Simple_repeat 2 43 0 966 160 21 0 chr11 33436957 33437150 -115346322 + FRAM SINE Alu 1 195 0 935 107 25 97 chr11 33437173 33437369 -115346103 + L1MB3 LINE L1 5991 6172 -11 394 284 29 0 chr11 33437561 33437663 -115345809 + MIR SINE MIR 72 176 -86 203 177 145 0 chr11 33437680 33437742 -115345730 + MIR SINE MIR 150 220 -42 21 0 0 0 chr11 33438878 33438899 -115344573 + AT_rich Low_complexity Low_complexity 1 21 0 2981 34 0 0 chr11 33439088 33439442 -115344030 + L1PA5 LINE L1 5801 6154 0 29 0 0 0 chr11 33439442 33439471 -115344001 + AT_rich Low_complexity Low_complexity 1 29 0 2260 92 7 0 chr11 33439525 33439817 -115343655 + AluSx SINE Alu 4 297 -15 1287 219 100 41 chr11 33439868 33440237 -115343235 - MSTD LTR MaLR 0 396 6 1239 163 50 14 chr11 33440631 33440852 -115342620 - AluJo SINE Alu -1 311 83 24 0 0 0 chr11 33440855 33440879 -115342593 + AT_rich Low_complexity Low_complexity 1 24 0 1219 144 26 18 chr11 33440910 33441139 -115342333 - L1MA5A LINE L1 -4 6293 6063 720 191 0 8 chr11 33441140 33441266 -115342206 + FLAM_C SINE Alu 1 125 -18 361 121 35 75 chr11 33441271 33441444 -115342028 + (TTTAA)n Simple_repeat Simple_repeat 5 170 0 3320 120 24 13 chr11 33441456 33441998 -115341474 - L1MA5A LINE L1 -219 6078 5531 1824 189 134 24 chr11 33442391 33442845 -115340627 - MLT1D LTR MaLR 0 505 2 614 299 39 34 chr11 33444363 33444570 -115338902 + MIR SINE MIR 47 254 -8 23 54 0 0 chr11 33444645 33444682 -115338790 + AT_rich Low_complexity Low_complexity 1 37 0 523 280 109 35 chr11 33444705 33444962 -115338510 + L2 LINE L2 3038 3313 0 2126 135 0 0 chr11 33445135 33445432 -115338040 + AluSx SINE Alu 1 297 -15 197 315 68 0 chr11 33445712 33445785 -115337687 - L2 LINE L2 -642 2672 2595 286 187 22 44 chr11 33448539 33448630 -115334842 - L1MC5 LINE L1 -29 7932 7844 1737 215 95 50 chr11 33449335 33449818 -115333654 - MLT1D LTR MaLR 0 505 1 304 265 70 43 chr11 33450084 33450269 -115333203 - MIR SINE MIR 0 262 73 213 353 92 17 chr11 33450324 33450443 -115333029 - L2 LINE L2 -6 3266 3139 482 241 241 10 chr11 33450454 33450653 -115332819 + MIR SINE MIR 6 250 -12 1715 177 7 3 chr11 33450802 33451105 -115332367 - AluJo SINE Alu 0 304 1 571 207 250 5 chr11 33451135 33451343 -115332129 + MIR SINE MIR 2 260 -2 204 367 117 8 chr11 33451482 33451602 -115331870 - L2 LINE L2 -7 3265 3133 1385 207 83 5 chr11 33451960 33452266 -115331206 + Charlie4a DNA MER1_type 17 362 -1599 2217 121 0 0 chr11 33452266 33452563 -115330909 + AluSg SINE Alu 1 297 -13 1385 207 83 5 chr11 33452563 33452652 -115330820 + Charlie4a DNA MER1_type 362 443 -65 353 256 33 0 chr11 33452668 33452758 -115330714 - L3 LINE CR1 -572 1005 913 739 134 0 0 chr11 33452777 33452889 -115330583 - FLAM_C SINE Alu -31 112 1 1495 266 85 39 chr11 33453179 33453769 -115329703 - MLT1G LTR MaLR 0 590 11 1911 140 23 13 chr11 33453771 33454078 -115329394 + AluJb SINE Alu 3 312 0 232 185 19 0 chr11 33454448 33454502 -115328970 + L1MB7 LINE L1 6130 6184 0 619 195 16 0 chr11 33457335 33457458 -115326014 - MER45C DNA AcHobo -7 946 822 477 34 0 0 chr11 33457458 33457517 -115325955 + (TC)n Simple_repeat Simple_repeat 2 60 0 2338 281 68 32 chr11 33457517 33458296 -115325176 - MER45C DNA AcHobo -112 841 35 648 216 164 0 chr11 33458367 33458538 -115324934 - MIR SINE MIR -32 230 32 206 270 0 0 chr11 33458882 33458919 -115324553 - MIR SINE MIR -111 97 61 21 0 0 0 chr11 33461790 33461811 -115321661 + AT_rich Low_complexity Low_complexity 1 21 0 239 281 47 0 chr11 33462543 33462607 -115320865 - MIR SINE MIR -75 133 67 699 294 15 5 chr11 33464735 33464939 -115318533 + L1M3d LINE L1 414 619 -5684 1449 193 120 25 chr11 33464963 33465289 -115318183 - MLT1A1 LTR MaLR 0 365 9 500 314 113 45 chr11 33465292 33465690 -115317782 + L1M3d LINE L1 654 1078 -5225 4066 225 114 14 chr11 33465834 33466360 -115317112 + L1MB1 LINE L1 778 1250 -5132 306 0 0 0 chr11 33466360 33466394 -115317078 + (TG)n Simple_repeat Simple_repeat 2 35 0 4066 225 114 14 chr11 33466394 33467990 -115315482 + L1MB1 LINE L1 1250 3010 -3372 2221 120 0 3 chr11 33467990 33468299 -115315173 + AluSx SINE Alu 5 312 0 8481 186 21 25 chr11 33468299 33470185 -115313287 + L1MB1 LINE L1 3526 5403 -979 11120 35 5 1 chr11 33470185 33472287 -115311185 + L1PA4 LINE L1 4058 6168 0 4447 145 75 25 chr11 33472290 33472906 -115310566 + L1MB1 LINE L1 5394 5978 -426 1753 148 9 72 chr11 33472906 33473238 -115310234 + AluJo SINE Alu 1 311 -1 1562 191 0 23 chr11 33473244 33473548 -115309924 + AluJb SINE Alu 1 297 -15 4447 145 75 25 chr11 33473548 33473881 -115309591 + L1MB1 LINE L1 5982 6399 -5 44861 32 3 2 chr11 33475546 33481686 -115301786 + L1PA4 LINE L1 1 6147 -8 26 50 0 0 chr11 33481686 33481726 -115301746 + AT_rich Low_complexity Low_complexity 1 40 0 267 54 0 0 chr11 33481826 33481863 -115301609 + (TG)n Simple_repeat Simple_repeat 2 38 0 2330 107 0 0 chr11 33483036 33483335 -115300137 - AluSx SINE Alu -11 301 3 771 173 0 0 chr11 33483514 33483647 -115299825 + FLAM_C SINE Alu 1 133 0 2410 59 0 29 chr11 33484649 33484956 -115298516 - AluY SINE Alu -13 298 1 187 256 240 33 chr11 33485673 33485794 -115297678 - L3b LINE CR1 -55 1528 1383 181 364 26 0 chr11 33485807 33485884 -115297588 - L3b LINE CR1 -4 1579 1501 249 235 0 0 chr11 33486348 33486399 -115297073 + L2 LINE L2 3262 3312 -1 304 289 191 16 chr11 33486434 33486690 -115296782 + L2 LINE L2 2243 2543 -771 317 360 67 0 chr11 33486778 33486942 -115296530 + L1ME LINE L1 3599 3773 -2373 277 303 27 65 chr11 33487197 33487345 -115296127 + L1ME LINE L1 4036 4177 -1969 2621 46 0 0 chr11 33487345 33487648 -115295824 + AluY SINE Alu 1 303 -8 277 303 27 65 chr11 33487648 33487684 -115295788 + L1ME LINE L1 4177 4213 -1933 192 250 0 0 chr11 33487767 33487811 -115295661 + MIR SINE MIR 100 143 -119 607 281 84 34 chr11 33487962 33488200 -115295272 + L2 LINE L2 2712 2961 -353 487 286 50 44 chr11 33488200 33488497 -115294975 + L1ME LINE L1 5413 5711 -451 758 279 122 44 chr11 33488863 33489380 -115294092 + L2 LINE L2 2533 3086 -227 2212 106 0 3 chr11 33489381 33489673 -115293799 + AluSx SINE Alu 1 291 -21 2840 220 139 26 chr11 33489683 33490592 -115292880 + L1MC4a LINE L1 6642 7652 -156 220 250 0 0 chr11 33490636 33490692 -115292780 + L2 LINE L2 2459 2514 -800 433 278 169 75 chr11 33490923 33491272 -115292200 + L2 LINE L2 2594 2975 -339 241 215 92 0 chr11 33491406 33491471 -115292001 + L2 LINE L2 3242 3312 -1 1461 169 12 4 chr11 33493463 33493705 -115289767 - AluJb SINE Alu -14 298 55 2125 127 13 3 chr11 33494487 33494794 -115288678 - AluSx SINE Alu 0 312 3 1694 121 98 4 chr11 33495880 33496144 -115287328 + AluJo SINE Alu 8 296 -16 30 27 0 0 chr11 33497225 33497262 -115286210 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr11 33497497 33497527 -115285945 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr11 33501486 33501520 -115281952 + AT_rich Low_complexity Low_complexity 1 34 0 1126 125 83 6 chr11 33505437 33505605 -115277867 + AluJo SINE Alu 12 192 -120 262 304 0 0 chr11 33505622 33505691 -115277781 + GA-rich Low_complexity Low_complexity 3 71 0 620 271 77 106 chr11 33506203 33506490 -115276982 + L2 LINE L2 2705 2999 -314 2337 71 0 10 chr11 33506490 33506786 -115276686 + AluY SINE Alu 1 293 -18 620 271 77 106 chr11 33506786 33506905 -115276567 + L2 LINE L2 2999 3120 -193 1814 137 26 26 chr11 33506905 33507212 -115276260 - AluSx SINE Alu -5 307 1 620 271 77 106 chr11 33507212 33507386 -115276086 + L2 LINE L2 3120 3278 -35 537 304 83 20 chr11 33507420 33507624 -115275848 - MLT1J LTR MaLR -294 217 1 1732 154 25 0 chr11 33508694 33508973 -115274499 + AluJb SINE Alu 5 290 -22 717 287 31 12 chr11 33509600 33509858 -115273614 - MLT1J LTR MaLR -10 501 239 1733 275 145 31 chr11 33509860 33510349 -115273123 - MER115 DNA AcHobo -1 692 117 1569 191 0 53 chr11 33510349 33510477 -115272995 + AluJb SINE Alu 5 138 -174 2197 133 0 0 chr11 33510477 33510777 -115272695 + AluSg SINE Alu 1 300 -10 1569 191 0 53 chr11 33510777 33510968 -115272504 + AluJb SINE Alu 138 307 -5 1733 275 145 31 chr11 33510968 33511093 -115272379 - MER115 DNA AcHobo -576 117 8 622 321 25 8 chr11 33511100 33511340 -115272132 - MLT1J LTR MaLR -267 244 1 235 234 9 37 chr11 33511857 33511964 -115271508 + (TATAA)n Simple_repeat Simple_repeat 5 108 0 602 184 190 19 chr11 33512319 33512477 -115270995 + MLT1J LTR MaLR 15 199 -312 241 282 42 0 chr11 33512575 33512646 -115270826 + MLT1J LTR MaLR 389 462 -49 377 322 81 0 chr11 33513381 33513530 -115269942 - MIR SINE MIR -50 212 52 568 150 92 58 chr11 33513684 33513804 -115269668 - FLAM_C SINE Alu -18 125 2 180 0 0 0 chr11 33514637 33514657 -115268815 + (CAGC)n Simple_repeat Simple_repeat 1 20 0 2331 110 3 0 chr11 33516281 33516589 -115266883 - AluSc SINE Alu 0 309 1 26 50 0 0 chr11 33516936 33516976 -115266496 + AT_rich Low_complexity Low_complexity 1 40 0 24 0 0 0 chr11 33518526 33518550 -115264922 + AT_rich Low_complexity Low_complexity 1 24 0 24 77 0 0 chr11 33521787 33521839 -115261633 + AT_rich Low_complexity Low_complexity 1 52 0 213 121 0 0 chr11 33524695 33524728 -115258744 + (T)n Simple_repeat Simple_repeat 1 33 0 207 0 0 0 chr11 33524890 33524913 -115258559 + (A)n Simple_repeat Simple_repeat 1 23 0 635 0 13 0 chr11 33529197 33529272 -115254200 + (CA)n Simple_repeat Simple_repeat 2 77 0 198 0 0 0 chr11 33532300 33532322 -115251150 + (A)n Simple_repeat Simple_repeat 1 22 0 282 29 0 0 chr11 33532776 33532811 -115250661 + (GA)n Simple_repeat Simple_repeat 1 35 0 229 341 0 0 chr11 33537312 33537400 -115246072 + G-rich Low_complexity Low_complexity 1 88 0 368 219 7 22 chr11 33537641 33537778 -115245694 + GA-rich Low_complexity Low_complexity 3 137 0 222 37 0 0 chr11 33538801 33538828 -115244644 + (TCTCC)n Simple_repeat Simple_repeat 5 31 0 22 80 0 0 chr11 33539931 33539981 -115243491 + GC_rich Low_complexity Low_complexity 1 50 0 201 133 0 0 chr11 33544207 33544237 -115239235 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 216 220 0 40 chr11 33545517 33545567 -115237905 + G-rich Low_complexity Low_complexity 1 48 0 24 0 0 0 chr11 33546516 33546540 -115236932 + GC_rich Low_complexity Low_complexity 1 24 0 351 0 0 0 chr11 33547095 33547134 -115236338 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr11 33548172 33548193 -115235279 + GC_rich Low_complexity Low_complexity 1 21 0 425 50 17 0 chr11 33549783 33549843 -115233629 + (TC)n Simple_repeat Simple_repeat 2 62 0 30 45 0 0 chr11 33552553 33552597 -115230875 + GC_rich Low_complexity Low_complexity 1 44 0 218 262 0 16 chr11 33552924 33552985 -115230487 + (GCCTG)n Simple_repeat Simple_repeat 5 64 0 306 148 0 0 chr11 33554170 33554224 -115229248 + (TGGGGG)n Simple_repeat Simple_repeat 6 59 0 320 0 25 0 chr11 33556401 33556441 -115227031 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 25 31 0 0 chr11 33562023 33562055 -115221417 + GC_rich Low_complexity Low_complexity 1 32 0 360 43 0 0 chr11 33563498 33563544 -115219928 + (TTTTA)n Simple_repeat Simple_repeat 1 46 0 1264 68 12 0 chr11 33563544 33563705 -115219767 - L1PA3 LINE L1 -24 6131 5969 216 0 0 0 chr11 33564506 33564530 -115218942 + (T)n Simple_repeat Simple_repeat 1 24 0 210 247 106 71 chr11 33565408 33565493 -115217979 + L3 LINE CR1 1383 1470 -107 24 0 0 0 chr11 33565602 33565626 -115217846 + AT_rich Low_complexity Low_complexity 1 24 0 204 325 0 36 chr11 33565797 33565880 -115217592 + MER5A DNA MER1_type 86 165 -24 322 234 8 109 chr11 33566023 33566151 -115217321 - MIR SINE MIR -88 174 60 1674 158 32 14 chr11 33566450 33566728 -115216744 - AluJb SINE Alu -29 283 1 633 263 78 56 chr11 33566868 33567226 -115216246 - MLT1J2 LTR MaLR 0 450 85 4851 260 190 20 chr11 33567313 33569370 -115214102 - L2 LINE L2 -680 2634 229 489 141 0 0 chr11 33569575 33569660 -115213812 + (TCCC)n Simple_repeat Simple_repeat 4 88 0 234 62 0 0 chr11 33569660 33569692 -115213780 + (CA)n Simple_repeat Simple_repeat 1 32 0 805 249 117 30 chr11 33570024 33570367 -115213105 - L1M1 LINE L1 -302 5819 5474 274 167 0 90 chr11 33570447 33570525 -115212947 + 7SK RNA RNA 38 108 -85 334 235 52 35 chr11 33571237 33571352 -115212120 - HAL1b LINE L1 0 1348 1232 372 227 99 96 chr11 33571363 33571605 -115211867 - L1MB8 LINE L1 -245 5933 5689 279 83 0 0 chr11 33571667 33571703 -115211769 - tRNA-Gly-GGC tRNA tRNA -38 36 1 317 241 97 88 chr11 33571750 33571925 -115211547 - L1MB8 LINE L1 -2238 5570 5391 2379 90 0 3 chr11 33571925 33572235 -115211237 - AluSc SINE Alu 0 309 1 317 241 97 88 chr11 33572235 33572275 -115211197 - L1MB8 LINE L1 -2417 5391 5353 21 57 0 0 chr11 33572357 33572392 -115211080 + AT_rich Low_complexity Low_complexity 1 35 0 185 231 96 39 chr11 33573165 33573217 -115210255 - L2 LINE L2 -8 3305 3251 * 190 222 0 0 chr11 33573183 33573219 -115210253 - MIR SINE MIR -23 239 204 279 0 0 0 chr11 33573240 33573271 -115210201 + (CA)n Simple_repeat Simple_repeat 2 32 0 23 54 0 0 chr11 33573566 33573603 -115209869 + AT_rich Low_complexity Low_complexity 1 37 0 264 30 0 0 chr11 33573767 33573800 -115209672 + (CA)n Simple_repeat Simple_repeat 1 33 0 421 232 323 24 chr11 33573827 33574081 -115209391 - L1MC4a LINE L1 -1895 5913 5584 2231 102 0 0 chr11 33574438 33574722 -115208750 + AluSx SINE Alu 9 292 -20 274 163 0 0 chr11 33574724 33574773 -115208699 + MER116 DNA Mariner 15 63 -17 381 278 0 9 chr11 33575588 33575696 -115207776 - L1ME LINE L1 -298 5823 5717 624 11 11 23 chr11 33575752 33575839 -115207633 + (TTTC)n Simple_repeat Simple_repeat 2 87 0 1743 174 0 4 chr11 33575839 33576120 -115207352 - AluJb SINE Alu -32 280 1 2243 92 10 0 chr11 33577157 33577450 -115206022 - AluSg SINE Alu -14 296 1 611 300 131 31 chr11 33577558 33578051 -115205421 + L2 LINE L2 2729 3272 0 2556 206 55 12 chr11 33578117 33578684 -115204788 - L1MD3 LINE L1 -1 7994 7404 622 230 0 8 chr11 33578684 33578810 -115204662 - MLT1F1 LTR MaLR -442 125 1 535 210 24 24 chr11 33578816 33578940 -115204532 - L1MD3 LINE L1 -729 7266 7143 1973 153 7 10 chr11 33579004 33579312 -115204160 - AluJo SINE Alu -5 307 1 1550 138 37 0 chr11 33580649 33580917 -115202555 + L1MA8 LINE L1 6010 6287 -4 1916 138 29 0 chr11 33580998 33581301 -115202171 + AluSx SINE Alu 1 311 0 317 216 57 12 chr11 33581443 33581542 -115201930 - MIR SINE MIR -40 168 61 2317 105 3 0 chr11 33582194 33582488 -115200984 + AluSp SINE Alu 1 295 -18 514 262 159 0 chr11 33584592 33584737 -115198735 - MIR SINE MIR -48 214 47 392 178 0 69 chr11 33584891 33584992 -115198480 + LTR41 LTR ERVL 671 764 -9 229 298 115 10 chr11 33585025 33585129 -115198343 + MIR SINE MIR 20 134 -128 845 178 6 29 chr11 33585275 33585449 -115198023 + FRAM SINE Alu 1 170 -6 1998 126 10 7 chr11 33585635 33585937 -115197535 - AluSx SINE Alu -9 303 1 705 326 19 8 chr11 33586531 33586789 -115196683 + MIR SINE MIR 1 261 -1 542 129 89 0 chr11 33586950 33587051 -115196421 - L1MD3 LINE L1 0 7995 7886 233 229 77 104 chr11 33587658 33587841 -115195631 - MER5B DNA MER1_type 0 178 1 25 0 0 0 chr11 33588147 33588172 -115195300 + AT_rich Low_complexity Low_complexity 1 25 0 423 270 85 69 chr11 33589508 33589558 -115193914 - MIR SINE MIR -54 208 160 1799 216 86 25 chr11 33589558 33589727 -115193745 + MLT1D LTR MaLR 1 158 -347 2233 117 3 0 chr11 33589727 33590026 -115193446 + AluSp SINE Alu 1 300 -13 1799 216 86 25 chr11 33590026 33590332 -115193140 + MLT1D LTR MaLR 158 505 0 423 270 85 69 chr11 33590332 33590470 -115193002 - MIR SINE MIR -102 160 17 2231 187 3 3 chr11 33590680 33591044 -115192428 + MLT1A1 LTR MaLR 1 364 -1 323 242 0 0 chr11 33592091 33592157 -115191315 + L2 LINE L2 3248 3313 0 1838 161 57 29 chr11 33592629 33592978 -115190494 + MLT1A1 LTR MaLR 1 359 -6 276 323 101 42 chr11 33593179 33593396 -115190076 + L2 LINE L2 2829 3058 -214 352 267 137 0 chr11 33593741 33593872 -115189600 + LTR67 LTR ERVL 408 556 -1 657 47 0 0 chr11 33593891 33593976 -115189496 + (TA)n Simple_repeat Simple_repeat 2 86 0 2290 103 0 0 chr11 33593976 33594267 -115189205 - AluSx SINE Alu -10 302 12 390 283 75 46 chr11 33595458 33595631 -115187841 - MER5B DNA MER1_type 0 178 1 368 205 8 4 chr11 33596829 33596966 -115186506 + MER53 DNA DNA 3 189 0 922 276 161 27 chr11 33597083 33597432 -115186040 + MLT1J LTR MaLR 4 417 -94 1954 143 58 36 chr11 33597432 33597795 -115185677 + THE1C LTR MaLR 5 375 0 922 276 161 27 chr11 33597795 33597854 -115185618 + MLT1J LTR MaLR 417 467 -44 1971 136 14 3 chr11 33597868 33598163 -115185309 - AluJb SINE Alu -14 298 1 408 293 50 44 chr11 33598379 33598560 -115184912 - MER5A DNA MER1_type -1 188 7 230 260 55 14 chr11 33599489 33599562 -115183910 - L2 LINE L2 -57 3256 3181 1736 145 21 18 chr11 33599648 33599930 -115183542 + AluJo SINE Alu 1 283 -29 430 270 173 25 chr11 33599961 33600459 -115183013 - L2 LINE L2 -138 3175 2606 180 333 79 32 chr11 33600902 33601028 -115182444 - MIR SINE MIR -56 152 21 218 69 0 69 chr11 33601163 33601221 -115182251 + (TA)n Simple_repeat Simple_repeat 1 54 0 220 214 0 0 chr11 33601409 33601451 -115182021 - MIR SINE MIR -151 111 70 2042 222 110 42 chr11 33601812 33602176 -115181296 - MLT1G LTR MaLR 0 590 175 1981 131 3 3 chr11 33602176 33602466 -115181006 + AluSx SINE Alu 1 290 -22 2042 222 110 42 chr11 33602466 33602645 -115180827 - MLT1G LTR MaLR -415 175 10 289 266 118 70 chr11 33602821 33603050 -115180422 - HAL1b LINE L1 0 1348 1109 2107 128 16 3 chr11 33603116 33603422 -115180050 - AluSg SINE Alu 0 310 1 273 226 0 0 chr11 33603506 33603559 -115179913 - AluJo SINE Alu 0 308 256 1059 181 0 40 chr11 33603560 33603759 -115179713 - AluJo SINE Alu -116 196 6 419 234 84 84 chr11 33603767 33603994 -115179478 + MLT1L LTR MaLR 41 267 -348 378 67 217 0 chr11 33604044 33604104 -115179368 - MADE1 DNA Mariner 0 80 8 233 158 73 110 chr11 33604184 33604266 -115179206 + MLT1L LTR MaLR 533 611 -4 276 219 19 95 chr11 33604312 33604417 -115179055 - L1ME LINE L1 -320 5801 5705 467 298 185 0 chr11 33604609 33604814 -115178658 + MIR SINE MIR 20 262 0 1420 146 32 4 chr11 33604948 33605007 -115178465 - L1MD3 LINE L1 -10 7985 7929 2090 125 10 7 chr11 33605007 33605310 -115178162 + AluSx SINE Alu 1 304 -8 1420 146 32 4 chr11 33605310 33605496 -115177976 - L1MD3 LINE L1 -66 7929 7733 402 257 125 0 chr11 33605603 33605739 -115177733 - MIR SINE MIR -75 187 35 198 316 20 41 chr11 33606490 33606588 -115176884 - MIR SINE MIR -166 96 1 500 244 90 19 chr11 33607164 33607320 -115176152 - MIR SINE MIR 0 262 96 277 312 0 21 chr11 33607320 33607413 -115176059 + MER39 LTR ERV1 1 91 -616 387 253 0 0 chr11 33607415 33607502 -115175970 - MIR SINE MIR -170 92 6 336 320 56 8 chr11 33607839 33607964 -115175508 - L2 LINE L2 0 3272 3142 225 289 19 0 chr11 33608020 33608072 -115175400 + L2 LINE L2 3129 3181 -91 232 333 105 26 chr11 33608230 33608290 -115175182 - L2 LINE L2 -252 3061 3007 2228 105 23 0 chr11 33608290 33608594 -115174878 + AluSx SINE Alu 2 312 0 232 333 105 26 chr11 33608594 33608686 -115174786 - L2 LINE L2 -306 3007 2897 496 305 119 11 chr11 33608937 33609114 -115174358 - MIR SINE MIR -47 215 20 238 254 18 79 chr11 33609167 33609281 -115174191 - MIR SINE MIR -50 212 106 500 311 126 9 chr11 33610085 33610307 -115173165 - MIR SINE MIR 0 262 15 858 177 106 50 chr11 33610421 33610619 -115172853 + MER3 DNA MER1_type 1 209 0 195 42 0 0 chr11 33611304 33611328 -115172144 + (CTG)n Simple_repeat Simple_repeat 2 25 0 231 88 0 0 chr11 33611330 33611364 -115172108 + (TG)n Simple_repeat Simple_repeat 1 34 0 288 186 0 0 chr11 33611503 33611562 -115171910 + GA-rich Low_complexity Low_complexity 2 60 0 635 225 11 53 chr11 33611575 33611762 -115171710 - MIR SINE MIR 0 262 84 372 258 104 106 chr11 33612360 33612871 -115170601 - L1ME4a LINE L1 -15 6106 5597 727 244 76 36 chr11 33613116 33613355 -115170117 + MIR SINE MIR 8 260 -2 331 255 0 49 chr11 33613698 33613800 -115169672 - MIR SINE MIR -129 133 37 875 154 171 6 chr11 33613871 33614046 -115169426 + MER3 DNA MER1_type 2 205 -4 2122 127 0 3 chr11 33614103 33614402 -115169070 - AluSg SINE Alu -12 298 1 21 36 0 0 chr11 33614431 33614459 -115169013 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr11 33614487 33614508 -115168964 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 * 297 0 0 0 chr11 33614503 33614536 -115168936 + (TAA)n Simple_repeat Simple_repeat 2 34 0 256 326 36 88 chr11 33614845 33615038 -115168434 + L3 LINE CR1 1378 1560 -17 196 362 67 9 chr11 33615120 33615225 -115168247 + L2 LINE L2 3151 3261 -11 379 293 77 17 chr11 33615412 33615593 -115167879 - MIR SINE MIR -6 256 65 204 40 0 0 chr11 33615894 33615919 -115167553 + (TC)n Simple_repeat Simple_repeat 2 26 0 2370 89 0 10 chr11 33615919 33616221 -115167251 - AluY SINE Alu -12 299 1 529 272 113 5 chr11 33616318 33616513 -115166959 - MLT1K LTR MaLR 0 588 373 612 256 101 12 chr11 33616588 33616756 -115166716 - MER119 DNA MER1_type -396 187 5 366 328 37 0 chr11 33616849 33616983 -115166489 + MIR SINE MIR 53 191 -71 1449 225 95 27 chr11 33617103 33617547 -115165925 - MLT1J LTR MaLR 0 511 38 1509 199 24 0 chr11 33618257 33618553 -115164919 + L1MC1 LINE L1 6009 6311 -22 808 175 18 30 chr11 33619009 33619175 -115164297 + MER3 DNA MER1_type 6 122 -87 374 184 26 0 chr11 33619189 33619265 -115164207 + MER3 DNA MER1_type 128 205 -4 263 258 0 16 chr11 33619227 33619289 -115164183 - MER3 DNA MER1_type -120 89 29 * 27 0 0 0 chr11 33619853 33619880 -115163592 + AT_rich Low_complexity Low_complexity 1 27 0 491 241 53 0 chr11 33619981 33620114 -115163358 + MER103 DNA DNA 8 147 -19 1684 134 18 33 chr11 33621227 33621502 -115161970 + MER1B DNA MER1_type 1 271 -68 1898 114 0 0 chr11 33622222 33622477 -115160995 + AluSc SINE Alu 50 304 -5 255 296 34 62 chr11 33622571 33622747 -115160725 - MIR SINE MIR -72 190 20 284 327 7 47 chr11 33622788 33622938 -115160534 + MIR SINE MIR 59 202 -60 1012 230 18 51 chr11 33623721 33624020 -115159452 - L1MD3 LINE L1 0 8037 7768 995 227 4 48 chr11 33624041 33624103 -115159369 - MER58A DNA MER1_type -2196 224 161 1491 113 45 5 chr11 33624103 33624324 -115159148 + MER30 DNA MER1_type 1 230 0 995 227 4 48 chr11 33624324 33624490 -115158982 - MER58A DNA MER1_type -2259 161 6 916 201 19 48 chr11 33624502 33624523 -115158949 - L1MC4 LINE L1 -455 7587 7567 1591 147 34 101 chr11 33624523 33624687 -115158785 - AluJo SINE Alu -7 305 132 1880 133 13 47 chr11 33624687 33625004 -115158468 - AluSx SINE Alu -6 306 1 1591 147 34 101 chr11 33625004 33625048 -115158424 - AluJo SINE Alu -180 132 87 212 0 36 0 chr11 33625048 33625076 -115158396 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2226 70 0 21 chr11 33625081 33625365 -115158107 - AluY SINE Alu -33 278 1 1591 147 34 101 chr11 33625365 33625476 -115157996 - AluJo SINE Alu -229 83 1 916 201 19 48 chr11 33625476 33625663 -115157809 - L1MC4 LINE L1 -475 7567 7385 274 293 32 38 chr11 33625850 33626007 -115157465 - MIR SINE MIR 0 262 107 299 275 12 0 chr11 33626015 33626095 -115157377 + MLT1H LTR MaLR 16 96 -453 1485 218 48 73 chr11 33626105 33626642 -115156830 - MER39 LTR ERV1 0 707 1 683 281 28 51 chr11 33626645 33626898 -115156574 + MLT1H LTR MaLR 104 350 -199 408 219 31 31 chr11 33626897 33626993 -115156479 + MLT1H LTR MaLR 454 549 0 * 201 308 29 39 chr11 33626999 33627029 -115156443 - MIR SINE MIR -155 107 78 1925 108 71 31 chr11 33627029 33627354 -115156118 + MER44D DNA MER2_type 1 608 -1 201 308 29 39 chr11 33627354 33627427 -115156045 - MIR SINE MIR -184 78 5 422 307 153 5 chr11 33628124 33628339 -115155133 - MIR SINE MIR -3 259 13 2635 25 6 19 chr11 33629949 33630287 -115153185 - AluY SINE Alu 0 334 1 420 283 127 29 chr11 33631849 33632022 -115151450 + MIR SINE MIR 70 259 -3 496 285 21 38 chr11 33632186 33632372 -115151100 - MIR SINE MIR -74 188 6 1591 259 114 46 chr11 33633401 33633780 -115149692 + L2 LINE L2 2225 2577 -736 3445 52 5 23 chr11 33633780 33634223 -115149249 - L1PA7 LINE L1 0 6154 5720 1591 259 114 46 chr11 33634223 33634562 -115148910 + L2 LINE L2 2577 2892 -421 632 239 0 0 chr11 33634562 33634696 -115148776 - MER94 DNA DNA 0 134 1 1591 259 114 46 chr11 33634696 33634988 -115148484 + L2 LINE L2 2892 3306 -7 222 263 84 11 chr11 33636260 33636355 -115147117 + MIR3 SINE MIR 100 201 -7 2340 156 0 3 chr11 33636560 33636926 -115146546 - MLT1A1 LTR MaLR 0 365 1 483 296 92 5 chr11 33637074 33637270 -115146202 - MIR SINE MIR -20 242 30 216 0 0 0 chr11 33637910 33637934 -115145538 + (GTCTG)n Simple_repeat Simple_repeat 2 25 0 4019 136 36 39 chr11 33640228 33640854 -115142618 - L1MC1 LINE L1 -5 6328 5703 2281 98 0 0 chr11 33640854 33641140 -115142332 + AluSx SINE Alu 7 292 -20 4019 136 36 39 chr11 33641140 33641210 -115142262 - L1MC1 LINE L1 -630 5703 5634 1151 218 0 40 chr11 33641213 33641465 -115142007 - MSTD LTR MaLR 0 396 155 229 271 34 0 chr11 33641514 33641573 -115141899 + CT-rich Low_complexity Low_complexity 2 62 0 676 110 0 0 chr11 33641584 33641675 -115141797 - AluSq/x SINE Alu -163 150 60 1347 186 71 14 chr11 33641704 33641884 -115141588 - AluJo SINE Alu 0 312 107 456 19 0 0 chr11 33641884 33641937 -115141535 + (TG)n Simple_repeat Simple_repeat 2 54 0 1347 186 71 14 chr11 33641937 33642051 -115141421 - AluJo SINE Alu -205 107 1 1734 123 0 0 chr11 33642143 33642371 -115141101 + AluSx SINE Alu 1 228 -84 696 199 74 7 chr11 33642376 33642527 -115140945 - MLT1A2 LTR MaLR -229 161 1 2461 212 83 74 chr11 33642528 33642959 -115140513 - L1MC5 LINE L1 -435 7526 7100 17373 35 1 0 chr11 33642959 33645777 -115137695 + L1PA4 LINE L1 3326 6152 -3 2461 212 83 74 chr11 33645777 33645793 -115137679 - L1MC5 LINE L1 -861 7100 7086 1476 205 25 21 chr11 33645793 33646076 -115137396 + AluJb SINE Alu 1 284 -28 1188 0 0 0 chr11 33646076 33646208 -115137264 + (GGAAA)n Simple_repeat Simple_repeat 3 134 0 2461 212 83 74 chr11 33646208 33646826 -115136646 - L1MC5 LINE L1 -874 7087 6430 5405 96 4 3 chr11 33648166 33648918 -115134554 - L1PA14 LINE L1 -3 6158 5406 864 272 85 35 chr11 33649208 33649550 -115133922 - MLT1I LTR MaLR -22 387 29 206 327 89 0 chr11 33650636 33650737 -115132735 - MIR SINE MIR -69 139 30 634 322 5 0 chr11 33651226 33651434 -115132038 + MIR SINE MIR 18 226 -36 2163 116 0 0 chr11 33651457 33651784 -115131688 - AluSx SINE Alu 0 327 1 319 317 19 0 chr11 33651927 33652031 -115131441 - MIR3 SINE MIR -15 193 88 1204 223 26 21 chr11 33652465 33652935 -115130537 - MLT1H1 LTR MaLR -2 553 30 519 288 38 6 chr11 33653381 33653541 -115129931 - MIR SINE MIR -29 233 69 1054 230 19 55 chr11 33653546 33653907 -115129565 - L2 LINE L2 -3 3310 2963 504 330 22 0 chr11 33654014 33654199 -115129273 - MER5A DNA MER1_type 0 189 1 246 250 28 14 chr11 33654437 33654509 -115128963 + MIR SINE MIR 47 119 -143 623 295 44 20 chr11 33655261 33655512 -115127960 - MIR SINE MIR 0 262 6 1793 163 14 7 chr11 33655696 33655991 -115127481 - AluJo SINE Alu -15 297 1 346 326 37 0 chr11 33657520 33657655 -115125817 + MIR SINE MIR 8 147 -115 223 276 138 11 chr11 33657725 33657812 -115125660 + MIR SINE MIR 150 247 -15 1801 163 0 3 chr11 33657929 33658283 -115125189 - AluJb SINE Alu 0 353 1 592 241 185 14 chr11 33659334 33659686 -115123786 - L1ME4a LINE L1 -4 6117 5706 363 247 11 0 chr11 33659857 33659946 -115123526 - L1ME4a LINE L1 -457 5664 5575 715 252 146 38 chr11 33660159 33660583 -115122889 - MLT1K LTR MaLR -4 472 3 234 160 11 213 chr11 33660875 33660969 -115122503 - L2 LINE L2 0 3313 3239 243 192 115 0 chr11 33661570 33661622 -115121850 - L2 LINE L2 -1 3312 3255 2041 141 46 32 chr11 33661677 33662047 -115121425 + THE1C LTR MaLR 1 375 0 621 249 46 5 chr11 33662230 33662427 -115121045 + MIR SINE MIR 46 250 -12 312 291 94 71 chr11 33662524 33662906 -115120566 - L2 LINE L2 0 3313 2923 268 277 24 12 chr11 33662970 33663053 -115120419 + MER117 DNA MER1_type 114 197 0 2483 70 0 7 chr11 33663263 33663564 -115119908 + AluSq SINE Alu 1 299 -14 2317 96 0 16 chr11 33664556 33664859 -115118613 + AluSq SINE Alu 1 298 -15 342 0 0 0 chr11 33665239 33665277 -115118195 + (CA)n Simple_repeat Simple_repeat 2 39 0 1286 171 24 20 chr11 33665438 33665684 -115117788 - L1PA16 LINE L1 -1 6165 5919 219 152 0 0 chr11 33665684 33665730 -115117742 + CT-rich Low_complexity Low_complexity 2 47 0 247 298 23 117 chr11 33666036 33666335 -115117137 + L2 LINE L2 2920 3190 -82 1178 181 0 14 chr11 33666362 33666572 -115116900 + MER3 DNA MER1_type 3 209 0 563 319 46 17 chr11 33666773 33667011 -115116461 + MIR SINE MIR 8 252 -10 262 270 0 54 chr11 33667026 33667100 -115116372 - L2 LINE L2 0 3272 3203 464 188 12 0 chr11 33668078 33668158 -115115314 - MIR3 SINE MIR -3 205 125 539 308 114 54 chr11 33668333 33668667 -115114805 + L2 LINE L2 2914 3267 -5 180 333 60 36 chr11 33668676 33668760 -115114712 - L2 LINE L2 -36 3236 3151 805 123 39 23 chr11 33668913 33669043 -115114429 + AluJb SINE Alu 5 136 -176 323 364 38 0 chr11 33669247 33669379 -115114093 - MIR3 SINE MIR -14 194 58 1933 133 0 0 chr11 33670170 33670455 -115113017 - AluSx SINE Alu -21 291 7 296 298 99 25 chr11 33670486 33670607 -115112865 - L2 LINE L2 -5 3267 3138 355 295 205 19 chr11 33671150 33671306 -115112166 - MIR SINE MIR -6 256 72 1531 263 79 8 chr11 33671612 33672252 -115111220 - L1ME3A LINE L1 -219 5951 5249 1949 181 13 16 chr11 33672252 33672628 -115110844 - THE1C LTR MaLR 0 375 1 1531 263 79 8 chr11 33672628 33672695 -115110777 - L1ME3A LINE L1 -921 5249 5188 1010 140 55 0 chr11 33672702 33672866 -115110606 - AluSg/x SINE Alu -8 302 130 2116 117 0 0 chr11 33672916 33673215 -115110257 + AluSq SINE Alu 1 299 -14 1155 271 92 40 chr11 33673225 33674064 -115109408 - L1MC4 LINE L1 -16 8026 3652 747 265 144 74 chr11 33674098 33674569 -115108903 - MLT1H1 LTR MaLR 0 555 52 292 196 139 12 chr11 33674576 33674680 -115108792 - AluJ/FLAM SINE Alu -206 96 54 250 262 16 0 chr11 33674681 33674742 -115108730 - MLT1H1 LTR MaLR -505 62 1 516 303 9 14 chr11 33674747 33674965 -115108507 - L1MC4 LINE L1 -2498 3648 3432 1718 226 34 18 chr11 33674980 33675360 -115108112 - MER70B LTR ERVL -192 386 1 268 302 93 0 chr11 33675406 33675492 -115107980 + L2 LINE L2 3142 3235 -37 334 280 76 15 chr11 33675560 33675692 -115107780 - L2 LINE L2 -207 3065 2926 2589 118 3 3 chr11 33675721 33676085 -115107387 - THE1B LTR MaLR 0 364 1 384 176 0 40 chr11 33676100 33676174 -115107298 + L2 LINE L2 3202 3272 0 2878 184 5 43 chr11 33676244 33676699 -115106773 - MER74A LTR ERVL 0 558 128 2303 81 0 0 chr11 33676699 33676994 -115106478 - AluSg SINE Alu -15 295 1 2878 184 5 43 chr11 33676994 33677115 -115106357 - MER74A LTR ERVL -430 128 4 340 261 0 0 chr11 33677254 33677319 -115106153 - L2 LINE L2 0 3272 3208 472 250 100 0 chr11 33678273 33678413 -115105059 - MIR SINE MIR -6 256 103 582 158 10 0 chr11 33679081 33679213 -115104259 + AluY SINE Alu 183 315 0 1239 272 17 36 chr11 33679449 33679806 -115103666 + MLT1J LTR MaLR 3 352 -159 306 148 0 0 chr11 33680269 33680323 -115103149 + (CCCCCA)n Simple_repeat Simple_repeat 6 59 0 22 35 0 0 chr11 33683312 33683341 -115100131 + GC_rich Low_complexity Low_complexity 1 29 0 233 101 58 43 chr11 33683501 33683570 -115099902 + (GGGTG)n Simple_repeat Simple_repeat 5 74 0 573 160 0 0 chr11 33683574 33683718 -115099754 + G-rich Low_complexity Low_complexity 1 144 0 242 218 51 13 chr11 33683731 33683809 -115099663 + G-rich Low_complexity Low_complexity 2 82 0 866 214 60 48 chr11 33685782 33686034 -115097438 + MIR SINE MIR 8 262 0 24 0 0 0 chr11 33687741 33687765 -115095707 + GC_rich Low_complexity Low_complexity 1 24 0 448 251 21 47 chr11 33688210 33688401 -115095071 + L2 LINE L2 2871 3056 -257 293 286 114 0 chr11 33688891 33688996 -115094476 - MER91C DNA MER1_type -23 117 1 1613 138 71 79 chr11 33689303 33689681 -115093791 - THE1C LTR MaLR 0 375 1 292 296 56 37 chr11 33690890 33690998 -115092474 + MER5C DNA MER1_type 1 110 -214 369 296 0 40 chr11 33691003 33691155 -115092317 - L1ME LINE L1 -545 5619 5474 2315 135 0 11 chr11 33691162 33691525 -115091947 - L1PB1 LINE L1 -10 6141 5783 226 233 0 0 chr11 33691670 33691713 -115091759 + GA-rich Low_complexity Low_complexity 2 44 0 454 298 77 17 chr11 33692014 33692195 -115091277 + MIR SINE MIR 65 256 -6 231 362 67 9 chr11 33692382 33692487 -115090985 - L2 LINE L2 -11 3261 3151 319 332 36 87 chr11 33692566 33692762 -115090710 - L3 LINE CR1 -14 1563 1378 324 0 0 0 chr11 33693071 33693107 -115090365 + (TTA)n Simple_repeat Simple_repeat 2 37 0 21 36 0 0 chr11 33693147 33693175 -115090297 + AT_rich Low_complexity Low_complexity 1 28 0 2167 110 0 0 chr11 33693204 33693496 -115089976 + AluSx SINE Alu 1 292 -20 265 163 0 0 chr11 33693498 33693547 -115089925 + MER116 DNA Mariner 15 63 -17 371 278 0 9 chr11 33694362 33694470 -115089002 - L1ME LINE L1 -298 5823 5717 1686 189 0 3 chr11 33694526 33694878 -115088594 - AluJb SINE Alu 0 351 1 1398 117 0 0 chr11 33695354 33695550 -115087922 + AluSx SINE Alu 33 228 -84 691 199 74 7 chr11 33695555 33695706 -115087766 - MLT1A2 LTR MaLR -229 161 1 1443 185 116 41 chr11 33695707 33696145 -115087327 - L1MC5 LINE L1 -435 7526 7056 * 16507 32 4 8 chr11 33696138 33699004 -115084468 + L1PA4 LINE L1 3326 6178 0 24 32 0 0 chr11 33700448 33700479 -115082993 + GC_rich Low_complexity Low_complexity 1 31 0 2079 87 11 0 chr11 33700853 33701139 -115082333 - AluY SINE Alu -22 289 1 12921 197 22 19 chr11 33701296 33705265 -115078207 + L1PBa LINE L1 1488 5557 -1305 221 30 61 0 chr11 33706344 33706377 -115077095 + A-rich Low_complexity Low_complexity 1 35 0 544 253 52 23 chr11 33706413 33706587 -115076885 - MIR SINE MIR -58 204 26 296 286 125 9 chr11 33706669 33706781 -115076691 + MIR3 SINE MIR 63 187 -21 1166 240 29 0 chr11 33707693 33707939 -115075533 + MIR SINE MIR 10 262 0 377 251 235 22 chr11 33709299 33709482 -115073990 + MIR SINE MIR 29 250 -12 337 248 248 37 chr11 33709784 33709945 -115073527 + MIR SINE MIR 51 245 -17 2014 202 60 24 chr11 33710210 33710676 -115072796 - MLT1D LTR MaLR 0 505 23 3946 165 27 6 chr11 33711576 33712286 -115071186 - L1MB2 LINE L1 0 6171 5447 301 221 86 114 chr11 33712294 33712434 -115071038 - L1ME4a LINE L1 0 6121 5986 475 301 27 21 chr11 33712447 33712633 -115070839 - L1MC4a LINE L1 -1894 5914 5728 962 272 14 5 chr11 33712664 33712881 -115070591 + MIR SINE MIR 1 219 -43 281 194 51 41 chr11 33712919 33712978 -115070494 - L1MC4a LINE L1 -422 5699 5637 478 146 19 39 chr11 33712978 33713081 -115070391 - L1PA12 LINE L1 0 6168 6068 281 194 51 41 chr11 33713081 33713119 -115070353 - L1MC4a LINE L1 -484 5637 5601 456 268 162 32 chr11 33713733 33714017 -115069455 - L1ME4a LINE L1 -4 6117 5797 285 234 160 21 chr11 33714085 33714179 -115069293 + MIR3 SINE MIR 9 115 -93 2175 87 0 0 chr11 33714242 33714528 -115068944 + AluSx SINE Alu 20 305 -7 295 225 207 18 chr11 33714985 33715096 -115068376 + MIR3 SINE MIR 39 170 -38 211 338 13 13 chr11 33715103 33715180 -115068292 - L2 LINE L2 0 3272 3196 190 250 54 0 chr11 33715191 33715247 -115068225 - MIR SINE MIR -10 252 194 288 80 73 44 chr11 33715249 33715386 -115068086 + (TATAA)n Simple_repeat Simple_repeat 4 144 0 731 258 26 26 chr11 33715405 33715595 -115067877 - MIR SINE MIR -61 201 12 688 288 111 4 chr11 33715642 33715868 -115067604 - MIR SINE MIR -12 250 1 287 321 15 0 chr11 33716392 33716523 -115066949 + (TGAA)n Simple_repeat Simple_repeat 3 135 0 521 316 109 0 chr11 33719036 33719229 -115064243 - MIR SINE MIR -34 228 15 306 306 75 37 chr11 33719245 33719379 -115064093 - MIR3 SINE MIR -6 202 64 367 217 59 86 chr11 33719757 33719909 -115063563 + MIR3 SINE MIR 7 154 -54 4793 47 10 7 chr11 33720129 33721115 -115062357 - SVA Other Other -955 1386 32 1602 203 3 16 chr11 33772240 33772556 -115010916 - AluJo SINE Alu 0 312 1 2043 131 7 0 chr11 33772585 33772883 -115010589 + AluSx SINE Alu 1 300 -12 26 0 0 0 chr11 33772961 33772987 -115010485 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr11 33773780 33773801 -115009671 + AT_rich Low_complexity Low_complexity 1 21 0 333 0 0 0 chr11 33774744 33774781 -115008691 + (TG)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr11 33775980 33776001 -115007471 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 33776563 33776584 -115006888 + AT_rich Low_complexity Low_complexity 1 21 0 3590 155 29 7 chr11 33777641 33777909 -115005563 - L1MA8 LINE L1 -373 5918 5657 5528 142 124 9 chr11 33777909 33779013 -115004459 + Tigger3b DNA MER2_type 1 1231 0 3590 155 29 7 chr11 33779013 33779484 -115003988 - L1MA8 LINE L1 -634 5657 5164 22 35 0 0 chr11 33779587 33779616 -115003856 + AT_rich Low_complexity Low_complexity 1 29 0 243 0 0 0 chr11 33779827 33779854 -115003618 + (TA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr11 33781360 33781381 -115002091 + AT_rich Low_complexity Low_complexity 1 21 0 1335 158 38 0 chr11 33781744 33781953 -115001519 + AluJo SINE Alu 3 219 -93 242 98 235 0 chr11 33781998 33782049 -115001423 + MER3 DNA MER1_type 147 209 0 * 444 203 0 0 chr11 33782049 33782096 -115001376 - MER3 DNA MER1_type -162 47 1 593 261 100 54 chr11 33782362 33782568 -115000904 + HAL1b LINE L1 344 568 -780 2213 69 7 16 chr11 33782568 33782871 -115000601 - AluY SINE Alu -11 300 1 593 261 100 54 chr11 33782871 33782944 -115000528 + HAL1b LINE L1 568 636 -712 344 253 25 0 chr11 33783035 33783114 -115000358 + L2 LINE L2 3177 3257 -56 846 257 64 55 chr11 33783151 33783638 -114999834 + HAL1b LINE L1 658 1148 -200 323 278 198 0 chr11 33784017 33784179 -114999293 - L1MC4a LINE L1 -1882 5926 5733 408 231 71 101 chr11 33784240 33784478 -114998994 - L1MC4a LINE L1 -529 5633 5403 30 0 0 0 chr11 33784512 33784542 -114998930 + AT_rich Low_complexity Low_complexity 1 30 0 2000 139 0 0 chr11 33784632 33784919 -114998553 + AluSx SINE Alu 1 287 -25 23 54 0 0 chr11 33784919 33784956 -114998516 + AT_rich Low_complexity Low_complexity 1 37 0 234 163 113 62 chr11 33785802 33785882 -114997590 + L2 LINE L2 3121 3204 -109 807 175 34 178 chr11 33785893 33786032 -114997440 + MIR SINE MIR 2 130 -132 377 22 0 0 chr11 33786032 33786078 -114997394 - MADE1 DNA Mariner -34 46 1 807 175 34 178 chr11 33786078 33786185 -114997287 + MIR SINE MIR 130 251 -11 246 261 14 14 chr11 33786210 33786279 -114997193 + L2 LINE L2 3230 3298 -15 3858 189 52 35 chr11 33786317 33786497 -114996975 + L1MB7 LINE L1 4958 5134 -1050 1939 174 97 5 chr11 33786497 33786889 -114996583 - MSTA LTR MaLR 0 428 1 3858 189 52 35 chr11 33786889 33787057 -114996415 + L1MB7 LINE L1 5134 5298 -886 2300 98 3 0 chr11 33787057 33787353 -114996119 + AluY SINE Alu 1 297 -14 3858 189 52 35 chr11 33787353 33788172 -114995300 + L1MB7 LINE L1 5298 6163 -21 1360 143 14 0 chr11 33788191 33788400 -114995072 + AluJo SINE Alu 1 212 -100 354 155 52 0 chr11 33788411 33788527 -114994945 + (TA)n Simple_repeat Simple_repeat 1 122 0 678 280 39 58 chr11 33789054 33789156 -114994316 - MIR SINE MIR -8 254 152 1655 161 40 15 chr11 33789156 33789459 -114994013 - AluJb SINE Alu 0 310 1 678 280 39 58 chr11 33789459 33789611 -114993861 - MIR SINE MIR -110 152 3 2253 77 0 7 chr11 33792036 33792323 -114991149 + AluSg1 SINE Alu 1 285 -24 201 311 54 14 chr11 33792376 33792450 -114991022 + L2 LINE L2 3182 3258 -55 1414 264 91 27 chr11 33792695 33793244 -114990228 + L1MC4a LINE L1 5256 5839 -1969 1850 99 20 0 chr11 33793527 33793779 -114989693 - AluSq SINE Alu -56 257 1 2354 103 0 0 chr11 33793859 33794169 -114989303 - AluSg SINE Alu 0 310 1 1725 188 6 16 chr11 33794413 33794727 -114988745 - AluJb SINE Alu -1 311 1 610 289 171 11 chr11 33794794 33795081 -114988391 + L2 LINE L2 2980 3312 -1 369 0 0 0 chr11 33795399 33795440 -114988032 + (CA)n Simple_repeat Simple_repeat 2 42 0 1679 132 126 26 chr11 33795449 33795790 -114987682 - THE1C LTR MaLR 0 375 1 357 120 0 0 chr11 33795797 33795847 -114987625 - 5S rRNA rRNA -71 50 1 224 283 109 0 chr11 33796556 33796648 -114986824 - MIR SINE MIR -63 199 98 24 53 0 0 chr11 33797318 33797356 -114986116 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr11 33798266 33798292 -114985180 + AT_rich Low_complexity Low_complexity 1 26 0 394 275 58 82 chr11 33800775 33800982 -114982490 - MIR SINE MIR -4 258 57 198 303 15 0 chr11 33801129 33801195 -114982277 + MIR SINE MIR 87 153 -55 363 346 112 5 chr11 33801655 33801843 -114981629 - MIR SINE MIR -35 227 20 24 0 0 0 chr11 33802327 33802351 -114981121 + AT_rich Low_complexity Low_complexity 1 24 0 1581 180 16 74 chr11 33802783 33803161 -114980311 + MLT1A2 LTR MaLR 3 358 -16 745 217 56 123 chr11 33803161 33803552 -114979920 - MLT1A1 LTR MaLR 0 365 1 555 304 8 39 chr11 33803751 33804011 -114979461 - HERVFH21 LTR ERV1 -346 6183 5932 517 31 0 0 chr11 33804005 33804070 -114979402 - HERVFH21 LTR ERV1 -1815 4714 4650 * 6247 185 38 30 chr11 33804074 33805559 -114977913 - HERVFH21 LTR ERV1 -3744 2785 1290 1557 156 3 54 chr11 33805669 33805964 -114977508 + AluJb SINE Alu 17 296 -16 1722 125 45 0 chr11 33806258 33806545 -114976927 - L1PA16 LINE L1 -4 6162 5863 819 269 72 75 chr11 33806717 33807065 -114976407 + L2 LINE L2 2364 2712 -602 937 214 35 0 chr11 33807065 33807266 -114976206 + MER3 DNA MER1_type 2 209 0 819 269 72 75 chr11 33807266 33807400 -114976072 + L2 LINE L2 2712 2845 -469 830 313 79 34 chr11 33807569 33808070 -114975402 - L2 LINE L2 -24 3289 2765 21 0 0 0 chr11 33808070 33808091 -114975381 + AT_rich Low_complexity Low_complexity 1 21 0 228 371 89 5 chr11 33808117 33808319 -114975153 - L2 LINE L2 -1833 1481 1263 189 293 114 49 chr11 33808372 33808495 -114974977 - L2 LINE L2 -2190 1124 994 212 322 28 79 chr11 33808629 33808843 -114974629 - L2 LINE L2 -2654 660 458 292 204 0 97 chr11 33809232 33809325 -114974147 - MER103 DNA DNA -9 157 74 391 211 30 45 chr11 33809476 33809609 -114973863 + HAL1b LINE L1 1200 1330 -18 2136 105 24 7 chr11 33809615 33809909 -114973563 - AluSx SINE Alu -13 299 1 25 31 0 0 chr11 33810036 33810068 -114973404 + AT_rich Low_complexity Low_complexity 1 32 0 2858 213 230 23 chr11 33810111 33811111 -114972361 + L1MC4 LINE L1 6749 8037 -5 184 232 36 36 chr11 33811300 33811356 -114972116 + MIR SINE MIR 206 261 -1 367 285 87 35 chr11 33811817 33811989 -114971483 - MIR SINE MIR -1 261 81 3923 178 62 56 chr11 33812000 33813501 -114969971 + L1MB2 LINE L1 4662 6171 0 3191 182 44 40 chr11 33813648 33814121 -114969351 + L1MB8 LINE L1 5423 5902 -276 1097 218 17 114 chr11 33814121 33814525 -114968947 - MLT1A1 LTR MaLR 0 365 1 3191 182 44 40 chr11 33814525 33814804 -114968668 + L1MB8 LINE L1 5902 6178 0 1091 281 92 16 chr11 33814807 33815230 -114968242 - L2 LINE L2 -1378 1936 1482 1529 194 26 80 chr11 33815257 33815562 -114967910 - MLT1A1 LTR MaLR 0 365 84 1469 106 23 0 chr11 33815562 33815779 -114967693 - L1PA13 LINE L1 0 6163 5942 1529 194 26 80 chr11 33815779 33815859 -114967613 - MLT1A1 LTR MaLR -281 84 1 1722 254 183 29 chr11 33815859 33816576 -114966896 - L2 LINE L2 -1866 1448 622 433 301 6 64 chr11 33817309 33817482 -114965990 - MIR3 SINE MIR -1 207 45 364 325 12 31 chr11 33817777 33817937 -114965535 + MIR SINE MIR 20 176 -86 1836 133 22 0 chr11 33818350 33818628 -114964844 + AluSq SINE Alu 1 284 -29 1002 105 0 0 chr11 33818628 33818664 -114964808 + AluSx SINE Alu 1 314 0 23 0 0 0 chr11 33818668 33818691 -114964781 + AT_rich Low_complexity Low_complexity 1 23 0 32 26 0 0 chr11 33818953 33818992 -114964480 + AT_rich Low_complexity Low_complexity 1 39 0 689 253 35 5 chr11 33819186 33819384 -114964088 - MER3 DNA MER1_type -4 205 2 959 184 0 6 chr11 33819568 33819736 -114963736 - AluJo SINE Alu -25 287 121 346 325 64 64 chr11 33820006 33820286 -114963186 + HAL1 LINE L1 329 608 -1899 591 273 100 35 chr11 33820441 33820760 -114962712 + HAL1 LINE L1 751 1090 -1417 779 260 91 9 chr11 33820878 33821097 -114962375 - MIR SINE MIR -21 241 5 1719 183 3 3 chr11 33821121 33821422 -114962050 + AluJb SINE Alu 1 301 -11 1345 268 157 39 chr11 33821493 33822246 -114961226 + HAL1 LINE L1 1328 2169 -338 1430 136 0 26 chr11 33822292 33822520 -114960952 + AluJb SINE Alu 82 303 -9 201 286 0 0 chr11 33822527 33822590 -114960882 + GA-rich Low_complexity Low_complexity 2 64 0 37336 70 5 3 chr11 33823230 33828981 -114954491 - L1PA5 LINE L1 -3 6151 395 420 307 0 0 chr11 33829188 33829302 -114954170 + MLT1A2 LTR MaLR 1 114 -260 342 324 0 0 chr11 33829306 33829408 -114954064 + MLT1A2 LTR MaLR 13 114 -260 1495 240 11 45 chr11 33829412 33829791 -114953681 + MLT1A2 LTR MaLR 9 374 0 728 114 0 9 chr11 33829791 33829905 -114953567 + MLT1A2-int LTR MaLR 1 113 -1258 573 260 88 11 chr11 33829914 33830095 -114953377 + L1ME1 LINE L1 5960 6154 -12 1832 141 0 27 chr11 33830160 33830457 -114953015 - AluJo SINE Alu -23 289 1 195 42 0 0 chr11 33830552 33830576 -114952896 + (TAGA)n Simple_repeat Simple_repeat 1 24 0 7605 109 36 3 chr11 33830851 33832006 -114951466 + Tigger1 DNA MER2_type 771 1964 -454 5204 160 34 44 chr11 33832006 33832077 -114951395 - L1PA16 LINE L1 -2 6164 6094 2350 101 0 0 chr11 33832077 33832384 -114951088 + AluSg SINE Alu 1 307 -3 5204 160 34 44 chr11 33832384 33832397 -114951075 - L1PA16 LINE L1 -72 6094 6082 2121 109 0 32 chr11 33832397 33832708 -114950764 + AluSx SINE Alu 1 301 -11 5204 160 34 44 chr11 33832708 33833442 -114950030 - L1PA16 LINE L1 -84 6082 5342 1671 128 97 0 chr11 33833442 33833699 -114949773 - AluSx SINE Alu -23 289 8 5204 160 34 44 chr11 33833699 33834060 -114949412 - L1PA16 LINE L1 -824 5342 4979 2321 119 0 0 chr11 33834060 33834372 -114949100 - AluSx SINE Alu 0 312 1 5204 160 34 44 chr11 33834372 33835107 -114948365 - L1PA16 LINE L1 -1187 4979 4252 2359 127 124 5 chr11 33835109 33835527 -114947945 + Tigger1 DNA MER2_type 1950 2417 -1 1648 250 66 73 chr11 33835570 33835942 -114947530 + HsTC2a DNA Tc2 4 370 -1530 1465 75 5 16 chr11 33835942 33836129 -114947343 + AluSp SINE Alu 1 185 -128 1648 250 66 73 chr11 33836129 33836497 -114946975 + HsTC2a DNA Tc2 370 739 -5 1758 147 4 4 chr11 33836804 33837076 -114946396 - AluSx SINE Alu -17 295 24 7179 48 8 0 chr11 33837143 33838795 -114944677 + L1PA5 LINE L1 4495 6154 0 2064 128 3 7 chr11 33841431 33841735 -114941737 + AluSq SINE Alu 1 303 -10 1459 165 56 25 chr11 33842131 33842416 -114941056 - MER7A DNA MER2_type -54 292 1 211 265 20 27 chr11 33842421 33842568 -114940904 + (TATAA)n Simple_repeat Simple_repeat 5 150 0 25 31 0 0 chr11 33843199 33843231 -114940241 + AT_rich Low_complexity Low_complexity 1 32 0 2218 100 3 10 chr11 33843279 33843580 -114939892 - AluSp SINE Alu -14 299 1 231 350 25 12 chr11 33844555 33844635 -114938837 - MIR SINE MIR -150 112 32 1715 140 24 86 chr11 33848428 33848800 -114934672 + L1MA9 LINE L1 5959 6307 -5 3105 131 78 0 chr11 33848889 33849378 -114934094 - MER1A DNA MER1_type 0 527 1 1493 249 41 61 chr11 33849396 33849436 -114934036 - MLT2B1 LTR ERVL 0 520 481 390 21 0 0 chr11 33849436 33849483 -114933989 + (TG)n Simple_repeat Simple_repeat 1 47 0 1493 249 41 61 chr11 33849483 33849931 -114933541 - MLT2B1 LTR ERVL -39 481 42 2195 264 169 34 chr11 33849967 33851154 -114932318 - L2 LINE L2 -37 3276 1925 451 247 0 45 chr11 33851465 33851557 -114931915 - L1MA10 LINE L1 0 6334 6250 7657 129 31 6 chr11 33851557 33852825 -114930647 + HSMAR2 DNA Mariner 1 1301 -1 451 247 0 45 chr11 33852825 33852886 -114930586 - L1MA10 LINE L1 -84 6250 6188 44064 38 4 1 chr11 33853055 33859189 -114924283 - L1PA3 LINE L1 0 6155 2 3676 256 63 66 chr11 33859189 33859610 -114923862 - L1MEc LINE L1 -4632 1764 1343 2157 84 0 0 chr11 33859610 33859885 -114923587 + AluY SINE Alu 30 304 -7 3676 256 63 66 chr11 33859885 33861187 -114922285 - L1MEc LINE L1 -5053 1343 46 21 36 0 0 chr11 33861562 33861590 -114921882 + AT_rich Low_complexity Low_complexity 1 28 0 800 132 7 29 chr11 33862580 33862716 -114920756 + FLAM_C SINE Alu 1 133 0 2234 43 43 7 chr11 33863737 33864017 -114919455 - AluY SINE Alu -21 290 1 248 290 130 7 chr11 33864118 33864256 -114919216 + L1ME1 LINE L1 3517 3671 -2475 586 247 36 10 chr11 33864300 33864494 -114918978 + L1ME1 LINE L1 3572 3770 -2376 22 35 0 0 chr11 33864502 33864531 -114918941 + AT_rich Low_complexity Low_complexity 1 29 0 527 242 51 13 chr11 33864567 33864724 -114918748 + L1ME1 LINE L1 3983 4145 -2001 310 185 27 71 chr11 33864769 33864953 -114918519 + (TTATA)n Simple_repeat Simple_repeat 5 180 0 202 54 27 27 chr11 33864991 33865028 -114918444 + (CTATA)n Simple_repeat Simple_repeat 2 38 0 1308 210 81 73 chr11 33865032 33865351 -114918121 + L1ME1 LINE L1 4320 4635 -1531 2179 109 143 8 chr11 33865351 33865728 -114917744 + MSTA LTR MaLR 1 428 0 1308 210 81 73 chr11 33865728 33866550 -114916922 + L1ME1 LINE L1 4635 5576 -590 1896 161 0 0 chr11 33866550 33866858 -114916614 + AluSx SINE Alu 3 310 0 1308 210 81 73 chr11 33866858 33867117 -114916355 + L1ME1 LINE L1 5576 5831 -335 272 197 16 33 chr11 33867167 33867228 -114916244 + MER2 DNA MER2_type 25 84 -261 974 186 67 105 chr11 33867279 33867559 -114915913 + L1ME1 LINE L1 5830 6096 -70 1474 207 0 11 chr11 33867559 33867844 -114915628 + AluJo SINE Alu 6 287 -25 974 186 67 105 chr11 33867844 33867907 -114915565 + L1ME1 LINE L1 6096 6160 -6 23 92 0 0 chr11 33868440 33868505 -114914967 + AT_rich Low_complexity Low_complexity 1 65 0 223 312 86 99 chr11 33868841 33868904 -114914568 + L2 LINE L2 2427 2489 -825 240 35 0 0 chr11 33868904 33868933 -114914539 + (CA)n Simple_repeat Simple_repeat 1 29 0 223 312 86 99 chr11 33868933 33869064 -114914408 + L2 LINE L2 2489 2619 -695 2267 46 3 7 chr11 33869064 33869346 -114914126 + AluY SINE Alu 1 320 0 263 0 26 26 chr11 33869346 33869385 -114914087 + (CAAAA)n Simple_repeat Simple_repeat 3 65 0 223 312 86 99 chr11 33869385 33869512 -114913960 + L2 LINE L2 2619 2746 -568 2388 59 0 34 chr11 33869512 33869833 -114913639 + AluY SINE Alu 1 310 -1 1647 170 46 7 chr11 33869837 33870123 -114913349 + L1PB4 LINE L1 5830 6119 -47 2266 107 0 19 chr11 33870123 33870441 -114913031 + AluSq SINE Alu 1 312 -1 1647 170 46 7 chr11 33870441 33870490 -114912982 + L1PB4 LINE L1 6119 6165 -1 449 223 121 70 chr11 33871032 33871189 -114912283 + MIR SINE MIR 97 261 -1 485 333 140 38 chr11 33871194 33871902 -114911570 + L2 LINE L2 2458 3268 -4 840 306 128 10 chr11 33872198 33872597 -114910875 + L3 LINE CR1 929 1374 -203 193 352 82 15 chr11 33872613 33872809 -114910663 + L2 LINE L2 1863 2071 -1243 341 267 35 0 chr11 33873982 33874068 -114909404 - MIR SINE MIR -3 259 171 459 96 68 0 chr11 33874068 33874141 -114909331 - Alu SINE Alu -15 296 219 360 335 89 23 chr11 33874305 33874562 -114908910 + L2 LINE L2 2221 2494 -820 193 375 56 26 chr11 33875192 33875461 -114908011 - L2 LINE L2 -353 2961 2685 574 158 10 0 chr11 33975570 33975702 -114807770 + AluY SINE Alu 183 315 0 1698 255 31 31 chr11 33975938 33976425 -114807047 + MLT1J LTR MaLR 3 489 -22 2434 77 3 0 chr11 33976459 33976757 -114806715 - AluY SINE Alu -12 299 1 240 234 78 13 chr11 33976979 33977056 -114806416 + MIR SINE MIR 71 152 -110 705 211 25 6 chr11 33977123 33977284 -114806188 + MIR3 SINE MIR 37 200 -8 765 245 0 69 chr11 33977336 33977552 -114805920 - MER63A DNA MER1_type -8 202 2 397 229 48 0 chr11 33978175 33978280 -114805192 + MER103 DNA DNA 6 115 -51 15513 189 23 17 chr11 33978496 33983951 -114799521 + L1P5 LINE L1 735 6494 -373 244 109 43 0 chr11 33983951 33983997 -114799475 + LTR66 LTR ERVL 392 439 -171 280 281 0 0 chr11 33984013 33984102 -114799370 + L1MC4 LINE L1 6614 6702 -1340 2358 135 0 11 chr11 33984105 33984468 -114799004 + L1PB1 LINE L1 5783 6141 -10 384 296 0 40 chr11 33984475 33984627 -114798845 + L1ME LINE L1 5474 5619 -545 246 296 56 37 chr11 33984632 33984740 -114798732 - MER5C DNA MER1_type -214 110 1 1671 138 72 75 chr11 33985950 33986326 -114797146 + THE1C LTR MaLR 1 375 0 297 267 114 0 chr11 33986633 33986738 -114796734 - MER91C DNA MER1_type 0 140 24 394 255 21 52 chr11 33987229 33987421 -114796051 - L2 LINE L2 -257 3056 2871 221 30 61 0 chr11 33988519 33988552 -114794920 + A-rich Low_complexity Low_complexity 1 35 0 479 259 46 17 chr11 33988588 33988762 -114794710 - MIR SINE MIR -58 204 26 258 261 110 4 chr11 33988844 33988956 -114794516 + MIR3 SINE MIR 62 187 -21 1055 240 29 0 chr11 33989869 33990115 -114793357 + MIR SINE MIR 10 262 0 298 267 133 12 chr11 33991481 33991658 -114791814 + MIR SINE MIR 43 250 -12 266 248 248 37 chr11 33991960 33992121 -114791351 + MIR SINE MIR 51 245 -17 1992 204 60 24 chr11 33992386 33992852 -114790620 - MLT1D LTR MaLR 0 505 23 4170 160 21 4 chr11 33993752 33994465 -114789007 - L1MB2 LINE L1 0 6171 5447 531 290 27 21 chr11 33994626 33994812 -114788660 - L1MC4a LINE L1 -1894 5914 5728 858 276 14 5 chr11 33994843 33995060 -114788412 + MIR SINE MIR 1 219 -43 266 204 51 41 chr11 33995098 33995157 -114788315 - L1MC4a LINE L1 -422 5699 5637 485 146 19 39 chr11 33995157 33995260 -114788212 - L1PA12 LINE L1 0 6168 6068 266 204 51 41 chr11 33995260 33995298 -114788174 - L1MC4a LINE L1 -484 5637 5601 454 271 162 32 chr11 33995914 33996198 -114787274 - L1ME4a LINE L1 -4 6117 5797 248 234 160 21 chr11 33996266 33996360 -114787112 + MIR3 SINE MIR 9 115 -93 2295 87 0 0 chr11 33996423 33996709 -114786763 + AluSx SINE Alu 20 305 -7 251 225 207 18 chr11 33997167 33997278 -114786194 + MIR3 SINE MIR 39 170 -38 182 304 14 14 chr11 33997285 33997354 -114786118 - L2 LINE L2 0 3272 3204 339 78 56 49 chr11 33997423 33997565 -114785907 + (TATAA)n Simple_repeat Simple_repeat 2 144 0 650 266 25 30 chr11 33997569 33997772 -114785700 - MIR SINE MIR -49 213 12 595 288 111 4 chr11 33997819 33998045 -114785427 - MIR SINE MIR -12 250 1 287 321 15 0 chr11 33998572 33998703 -114784769 + (TGAA)n Simple_repeat Simple_repeat 3 135 0 447 316 109 0 chr11 34001218 34001411 -114782061 - MIR SINE MIR -34 228 15 264 319 86 0 chr11 34001445 34001561 -114781911 - MIR3 SINE MIR -19 189 64 311 217 59 86 chr11 34001939 34002091 -114781381 + MIR3 SINE MIR 7 154 -54 5040 47 8 13 chr11 34002311 34003336 -114780136 - SVA Other Other -955 1386 1 204 97 0 0 chr11 34003337 34003368 -114780104 + (GGGAGA)n Simple_repeat Simple_repeat 1 31 0 753 234 52 40 chr11 34003780 34004032 -114779440 - MIR SINE MIR 0 262 8 207 0 0 0 chr11 34005096 34005119 -114778353 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 614 206 29 7 chr11 34005140 34005276 -114778196 - L1ME1 LINE L1 -117 6049 5911 277 153 34 0 chr11 34005285 34005344 -114778128 - L1ME1 LINE L1 -855 5291 5231 426 257 198 21 chr11 34006473 34006811 -114776661 - L2 LINE L2 -756 2558 2161 728 186 0 41 chr11 34007382 34007527 -114775945 - MER20 DNA MER1_type -1 218 80 653 309 14 14 chr11 34007554 34007719 -114775753 + MIR SINE MIR 43 211 -51 1747 162 0 11 chr11 34007719 34008028 -114775444 + AluJb SINE Alu 1 306 0 653 309 14 14 chr11 34008028 34008081 -114775391 + MIR SINE MIR 210 262 0 711 68 0 29 chr11 34008185 34008288 -114775184 + L1PA8 LINE L1 6071 6170 -2 25 31 0 0 chr11 34008538 34008570 -114774902 + AT_rich Low_complexity Low_complexity 1 32 0 2287 117 3 0 chr11 34008980 34009289 -114774183 - AluSg SINE Alu 0 310 1 531 223 12 36 chr11 34009728 34009749 -114773723 - L1MA10 LINE L1 0 6334 6314 1510 211 42 29 chr11 34009749 34009970 -114773502 - L1ME2 LINE L1 -9 6155 5925 2343 84 7 0 chr11 34009970 34010266 -114773206 - AluSx SINE Alu -14 298 1 1510 211 42 29 chr11 34010266 34010452 -114773020 - L1ME2 LINE L1 -239 5925 5743 269 293 132 19 chr11 34010520 34010732 -114772740 - L1ME4a LINE L1 -38 6083 5848 3059 270 57 6 chr11 34010850 34011892 -114771580 - L2 LINE L2 -440 2874 1780 1734 173 22 31 chr11 34011968 34012327 -114771145 - MLT1A1 LTR MaLR 0 365 10 326 303 79 30 chr11 34012414 34012579 -114770893 + MIR3 SINE MIR 25 197 -11 283 272 48 40 chr11 34012929 34013054 -114770418 - MIR SINE MIR -63 145 20 906 265 101 45 chr11 34013523 34013859 -114769613 - MLT1H LTR MaLR -194 355 1 216 237 13 26 chr11 34015493 34015569 -114767903 + T-rich Low_complexity Low_complexity 5 79 0 2088 132 0 25 chr11 34015972 34016290 -114767182 - AluSx SINE Alu -2 310 1 728 244 18 0 chr11 34016849 34017017 -114766455 + MIR SINE MIR 43 213 -49 212 321 64 9 chr11 34017345 34017454 -114766018 + MIR SINE MIR 78 192 -70 221 105 26 0 chr11 34017508 34017546 -114765926 + L2 LINE L2 3267 3305 -8 351 96 0 0 chr11 34017972 34018024 -114765448 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 316 332 183 13 chr11 34018027 34018328 -114765144 - L2 LINE L2 -35 3237 2886 197 211 289 11 chr11 34018409 34018499 -114764973 + MIR SINE MIR 35 149 -113 24 106 0 0 chr11 34018788 34018882 -114764590 + GC_rich Low_complexity Low_complexity 1 94 0 657 250 41 49 chr11 34019022 34019266 -114764206 + MIR SINE MIR 21 262 0 433 260 49 16 chr11 34019792 34019915 -114763557 - L2 LINE L2 -13 3259 3133 248 273 112 48 chr11 34020409 34020596 -114762876 - L2 LINE L2 -1 3312 3114 361 294 145 8 chr11 34020807 34021069 -114762403 - L1ME4a LINE L1 -80 6041 5744 346 314 13 38 chr11 34021428 34021587 -114761885 + MIR SINE MIR 59 213 -49 442 295 155 0 chr11 34021624 34021824 -114761648 - MIR SINE MIR -30 232 2 273 287 16 82 chr11 34022730 34022852 -114760620 - L2 LINE L2 -4 3268 3155 627 214 29 0 chr11 34023028 34023168 -114760304 + MIR SINE MIR 18 161 -101 * 706 198 31 12 chr11 34023157 34023319 -114760153 - MIR SINE MIR 0 262 98 275 218 140 99 chr11 34023414 34023583 -114759889 + L1ME4a LINE L1 5866 6049 -72 1969 151 17 7 chr11 34023583 34023881 -114759591 - AluJb SINE Alu -11 301 1 275 218 140 99 chr11 34023881 34023954 -114759518 + L1ME4a LINE L1 6049 6118 -3 347 326 47 0 chr11 34024546 34024675 -114758797 + L2 LINE L2 3176 3310 -3 774 238 66 78 chr11 34024802 34025122 -114758350 - MER46C DNA MER2_type -21 317 2 416 295 115 11 chr11 34025170 34025353 -114758119 + MIR SINE MIR 58 259 -3 196 271 47 19 chr11 34025354 34025461 -114758011 - MIR SINE MIR -61 201 92 1690 174 18 0 chr11 34025466 34025741 -114757731 + AluJo SINE Alu 11 290 -22 1709 144 59 4 chr11 34025763 34026033 -114757439 + AluSg SINE Alu 10 294 -16 212 178 0 22 chr11 34026847 34026892 -114756580 + GA-rich Low_complexity Low_complexity 1 44 0 930 207 0 5 chr11 34027299 34027492 -114755980 - MER96B DNA MER1_type? -183 234 43 385 233 45 68 chr11 34027511 34027644 -114755828 - LTR16C LTR ERVL -236 255 126 373 132 13 53 chr11 34027830 34027906 -114755566 + MLT1K LTR MaLR 510 582 -6 2254 149 56 26 chr11 34027973 34028486 -114754986 - MLT2A2 LTR ERVL 0 554 1 248 260 87 10 chr11 34028931 34029035 -114754437 + L2 LINE L2 3161 3272 0 293 290 179 16 chr11 34029138 34029318 -114754154 - MIR SINE MIR -40 222 15 363 229 72 0 chr11 34030605 34030688 -114752784 + L2 LINE L2 3184 3272 0 22 0 0 0 chr11 34030701 34030723 -114752749 + AT_rich Low_complexity Low_complexity 1 22 0 1985 117 48 0 chr11 34031292 34031595 -114751877 - AluSg SINE Alu 0 316 1 1727 112 0 4 chr11 34032041 34032274 -114751198 + AluSg SINE Alu 1 232 -78 401 289 99 35 chr11 34032493 34032725 -114750747 + MIR SINE MIR 16 262 0 216 363 52 0 chr11 34033079 34033214 -114750258 + MIR SINE MIR 25 166 -96 607 289 172 18 chr11 34033852 34034184 -114749288 + L1ME4a LINE L1 5737 6119 -2 305 325 97 7 chr11 34034924 34035078 -114748394 - MIR3 SINE MIR -22 186 19 27 0 0 0 chr11 34035219 34035246 -114748226 + AT_rich Low_complexity Low_complexity 1 27 0 473 311 28 19 chr11 34035283 34035495 -114747977 + MIR SINE MIR 34 247 -15 202 204 259 0 chr11 34035596 34035650 -114747822 - L2 LINE L2 0 3272 3205 185 138 0 0 chr11 34036382 34036411 -114747061 - MIR3 SINE MIR -27 181 153 491 277 101 0 chr11 34036411 34036559 -114746913 + MER117 DNA MER1_type 1 163 -34 271 190 17 0 chr11 34036613 34036671 -114746801 - MIR SINE MIR -109 99 41 555 277 79 72 chr11 34036835 34037365 -114746107 - MLT1F LTR MaLR -7 535 2 219 69 0 0 chr11 34037961 34037990 -114745482 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 722 273 88 42 chr11 34039125 34039646 -114743826 + L1ME4a LINE L1 5573 6117 -4 291 218 0 0 chr11 34039817 34039872 -114743600 + L2 LINE L2 3218 3272 0 499 223 0 0 chr11 34040692 34040795 -114742677 + MIR SINE MIR 47 149 -113 335 309 91 6 chr11 34040924 34041089 -114742383 - MIR SINE MIR -70 192 14 368 310 13 39 chr11 34042056 34042158 -114741314 - MIR SINE MIR -1 261 163 2611 112 3 8 chr11 34042158 34042524 -114740948 - THE1B LTR MaLR 0 364 1 368 310 13 39 chr11 34042524 34042576 -114740896 - MIR SINE MIR -99 163 111 241 353 64 12 chr11 34042632 34042805 -114740667 - L2 LINE L2 -173 3099 2918 356 296 50 25 chr11 34042993 34043152 -114740320 - MIR SINE MIR -69 193 31 275 333 103 32 chr11 34043962 34044118 -114739354 + MER5B DNA MER1_type 11 177 -1 419 304 82 10 chr11 34044278 34044472 -114739000 + MIR SINE MIR 54 261 -1 198 0 0 0 chr11 34044488 34044510 -114738962 + (CA)n Simple_repeat Simple_repeat 2 23 0 279 122 0 0 chr11 34044510 34044559 -114738913 + (GA)n Simple_repeat Simple_repeat 1 49 0 288 200 120 30 chr11 34044559 34044659 -114738813 + L1ME4a LINE L1 5964 6072 -49 300 313 111 56 chr11 34045523 34045900 -114737572 - L2 LINE L2 -27 3245 2848 1251 227 74 72 chr11 34045937 34046176 -114737296 + MER113 DNA MER1_type? 6 243 -278 423 0 0 0 chr11 34046176 34046223 -114737249 + (CA)n Simple_repeat Simple_repeat 2 48 0 1251 227 74 72 chr11 34046223 34046495 -114736977 + MER113 DNA MER1_type? 243 518 -3 203 256 29 23 chr11 34048028 34048200 -114735272 + (TATAA)n Simple_repeat Simple_repeat 5 177 0 23 54 0 0 chr11 34048211 34048248 -114735224 + AT_rich Low_complexity Low_complexity 1 37 0 653 272 55 5 chr11 34048866 34049083 -114734389 - MIR SINE MIR -1 261 34 180 0 0 0 chr11 34049415 34049435 -114734037 + (T)n Simple_repeat Simple_repeat 1 20 0 407 298 69 18 chr11 34049840 34050058 -114733414 + MLT1L LTR MaLR 147 375 -240 298 265 83 38 chr11 34050135 34050267 -114733205 + MLT1L LTR MaLR 477 614 -1 350 317 19 0 chr11 34050767 34050871 -114732601 + MLT1J1 LTR MaLR 69 174 -272 2976 33 41 0 chr11 34050967 34051329 -114732143 - L1PA4 LINE L1 -2 6153 5777 4023 28 2 0 chr11 34052498 34053002 -114730470 + L1PA3 LINE L1 5679 6183 0 1807 173 0 16 chr11 34054155 34054492 -114728980 + AluJo SINE Alu 1 312 0 331 254 35 77 chr11 34054493 34054662 -114728810 - MER103 DNA DNA -1 165 4 2165 128 3 6 chr11 34055811 34056123 -114727349 - AluSx SINE Alu -1 311 1 193 177 0 32 chr11 34056147 34056209 -114727263 + GA-rich Low_complexity Low_complexity 1 60 0 315 252 122 8 chr11 34056416 34056547 -114726925 + MLT1L LTR MaLR 133 278 -337 308 237 29 86 chr11 34056799 34056938 -114726534 + MIR SINE MIR 60 190 -72 2510 81 0 0 chr11 34057173 34057480 -114725992 + AluY SINE Alu 1 307 -4 191 374 44 33 chr11 34057658 34057749 -114725723 - L2 LINE L2 -40 3232 3141 198 0 0 0 chr11 34058023 34058045 -114725427 + (TG)n Simple_repeat Simple_repeat 1 22 0 234 314 57 29 chr11 34058072 34058212 -114725260 - L2 LINE L2 -456 2858 2715 206 200 20 40 chr11 34058995 34059045 -114724427 + L2 LINE L2 3034 3082 -190 606 304 20 10 chr11 34059145 34059349 -114724123 - MIR SINE MIR -56 206 1 186 103 0 0 chr11 34060663 34060692 -114722780 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1036 195 91 5 chr11 34060705 34060926 -114722546 - AluJo SINE Alu -72 240 1 435 52 0 0 chr11 34062045 34062103 -114721369 + (CA)n Simple_repeat Simple_repeat 1 58 0 533 229 11 87 chr11 34064522 34064705 -114718767 + MER21B LTR ERV1 681 849 -14 3187 140 61 23 chr11 34065873 34066408 -114717064 - L1MB8 LINE L1 -1 6177 5613 1681 161 29 63 chr11 34066408 34066786 -114716686 - MLT1A1 LTR MaLR 0 365 1 3187 140 61 23 chr11 34066786 34066870 -114716602 - L1MB8 LINE L1 -565 5613 5534 534 211 58 26 chr11 34067137 34067293 -114716179 + MER103 DNA DNA 2 162 -4 424 240 41 55 chr11 34067551 34067697 -114715775 - MIR SINE MIR -111 151 8 273 29 0 0 chr11 34067888 34067922 -114715550 + (CA)n Simple_repeat Simple_repeat 2 35 0 342 0 0 0 chr11 34067974 34068012 -114715460 + (T)n Simple_repeat Simple_repeat 1 38 0 911 189 0 0 chr11 34068384 34068587 -114714885 + FRAM SINE Alu 1 203 0 1879 148 27 13 chr11 34069218 34069516 -114713956 - AluJb SINE Alu -10 302 1 186 185 169 15 chr11 34069553 34069618 -114713854 + MIR3 SINE MIR 131 205 -3 533 265 115 52 chr11 34069913 34070279 -114713193 + MLT1K LTR MaLR 191 579 -9 186 71 0 0 chr11 34070825 34070853 -114712619 + (TTTTTG)n Simple_repeat Simple_repeat 4 31 0 467 297 114 5 chr11 34071150 34071352 -114712120 + L2 LINE L2 2837 3060 -253 636 255 132 32 chr11 34071352 34071846 -114711626 - MLT1G LTR MaLR 0 595 1 422 276 115 46 chr11 34071864 34072081 -114711391 + L2 LINE L2 3074 3305 -8 416 204 41 0 chr11 34073227 34073325 -114710147 + L1ME LINE L1 5628 5729 -392 1508 121 0 39 chr11 34073372 34073604 -114709868 + AluSg/x SINE Alu 70 292 -18 1581 191 10 13 chr11 34073714 34074023 -114709449 + AluJo SINE Alu 5 312 0 1633 50 0 0 chr11 34074079 34074277 -114709195 + L1PA7 LINE L1 5949 6146 -8 1196 83 12 12 chr11 34074388 34074556 -114708916 - L1MA1 LINE L1 0 6302 6135 1033 217 191 31 chr11 34075002 34075352 -114708120 - MLT1J LTR MaLR -105 406 1 408 217 47 28 chr11 34076746 34076852 -114706620 - MER69 DNA AcHobo -2418 108 1 200 204 102 102 chr11 34076928 34076977 -114706495 + MIR SINE MIR 52 100 -162 1837 143 58 33 chr11 34076977 34077341 -114706131 - THE1C LTR MaLR 0 375 3 200 204 102 102 chr11 34077341 34077389 -114706083 + MIR SINE MIR 99 149 -113 486 301 68 51 chr11 34077396 34077508 -114705964 + MLT1J LTR MaLR 1 110 -336 1934 221 8 65 chr11 34077508 34078001 -114705471 - LTR40c LTR ERVL 0 465 1 486 301 68 51 chr11 34078001 34078352 -114705120 + MLT1J LTR MaLR 110 444 -2 245 75 25 0 chr11 34078668 34078708 -114704764 + (TC)n Simple_repeat Simple_repeat 2 42 0 292 245 30 73 chr11 34078828 34079000 -114704472 + MIR SINE MIR 38 201 -61 1075 162 22 0 chr11 34079075 34079260 -114704212 + MER5A DNA MER1_type 1 189 0 24 0 0 0 chr11 34079319 34079343 -114704129 + AT_rich Low_complexity Low_complexity 1 24 0 1053 284 100 20 chr11 34079579 34079988 -114703484 - MLT1K LTR MaLR -8 580 139 321 231 34 34 chr11 34080042 34080159 -114703313 + MLT1J LTR MaLR 394 510 -1 256 162 40 81 chr11 34080307 34080343 -114703129 + MIR SINE MIR 129 162 -100 1359 196 72 36 chr11 34080343 34080675 -114702797 - MER2 DNA MER2_type 0 344 1 256 162 40 81 chr11 34080675 34080712 -114702760 + MIR SINE MIR 162 199 -63 950 213 36 32 chr11 34081675 34081896 -114701576 + MER58A DNA MER1_type 3 224 0 508 199 81 44 chr11 34082286 34082422 -114701050 - Charlie8 DNA MER1_type -2151 266 126 949 98 7 7 chr11 34082543 34082696 -114700776 + (GGAA)n Simple_repeat Simple_repeat 3 155 0 251 203 14 0 chr11 34083031 34083105 -114700367 + GA-rich Low_complexity Low_complexity 1 75 0 743 268 81 7 chr11 34083226 34083510 -114699962 + L1ME4a LINE L1 5815 6119 -2 229 195 0 0 chr11 34084877 34084918 -114698554 + (CA)n Simple_repeat Simple_repeat 2 42 0 1968 180 41 21 chr11 34084950 34085338 -114698134 + MSTD LTR MaLR 1 396 0 454 328 44 16 chr11 34085394 34085644 -114697828 + MIR SINE MIR 3 259 -3 2200 124 0 0 chr11 34086176 34086474 -114696998 + AluSx SINE Alu 3 300 -12 574 103 0 0 chr11 34086809 34086887 -114696585 - AluS SINE Alu -232 80 3 344 217 78 83 chr11 34087519 34087652 -114695820 - MIR SINE MIR -67 141 24 286 221 29 0 chr11 34087719 34087787 -114695685 - MER96 DNA MER1_type? -24 151 82 300 247 129 73 chr11 34088675 34088853 -114694619 - MIR SINE MIR -55 207 20 201 222 141 40 chr11 34088910 34089009 -114694463 - MIR SINE MIR -75 187 79 280 313 16 16 chr11 34089379 34089507 -114693965 + LTR33 LTR ERVL 328 455 -66 571 253 62 34 chr11 34089593 34089791 -114693681 - LTR33 LTR ERVL 0 521 320 359 312 32 48 chr11 34089794 34089980 -114693492 - LTR33 LTR ERVL -332 189 7 1225 267 53 15 chr11 34090087 34090480 -114692992 + L1MC4 LINE L1 7190 7597 -445 1079 259 16 8 chr11 34090481 34090766 -114692706 + L1ME3A LINE L1 5813 6103 -67 275 49 24 0 chr11 34090781 34090822 -114692650 + (TG)n Simple_repeat Simple_repeat 2 43 0 301 218 7 102 chr11 34090822 34090961 -114692511 + L1MC4 LINE L1 7916 8042 0 3399 97 11 40 chr11 34091346 34091646 -114691826 - L1PA13 LINE L1 -2 6161 5880 2226 98 0 14 chr11 34091646 34091975 -114691497 + AluSg SINE Alu 1 325 0 3399 97 11 40 chr11 34091975 34092197 -114691275 - L1PA13 LINE L1 -283 5880 5653 281 182 18 0 chr11 34092749 34092804 -114690668 + L2 LINE L2 3256 3311 -2 370 244 183 0 chr11 34093218 34093349 -114690123 - MIR SINE MIR -16 246 92 1199 223 54 113 chr11 34093351 34093723 -114689749 + MLT2B1 LTR ERVL 1 350 -64 605 170 35 6 chr11 34093727 34093898 -114689574 + (TAGA)n Simple_repeat Simple_repeat 2 177 0 326 76 21 0 chr11 34093900 34093953 -114689519 + MLT2B1 LTR ERVL 400 520 0 795 236 110 80 chr11 34094143 34094205 -114689267 + MLT1L LTR MaLR 236 295 -320 2183 111 3 3 chr11 34094205 34094503 -114688969 + AluSc SINE Alu 2 299 -10 795 236 110 80 chr11 34094503 34094804 -114688668 + MLT1L LTR MaLR 295 610 -5 186 133 0 0 chr11 34094983 34095013 -114688459 + (TCTA)n Simple_repeat Simple_repeat 3 32 0 978 290 24 10 chr11 34096011 34096301 -114687171 - MLT1I LTR MaLR 0 409 116 258 330 38 0 chr11 34097810 34097916 -114685556 - MIR SINE MIR -141 121 12 1305 90 58 0 chr11 34097917 34098105 -114685367 + MER30 DNA MER1_type 1 199 -31 363 291 103 8 chr11 34098183 34098300 -114685172 + MIR SINE MIR 22 149 -113 288 200 158 0 chr11 34098975 34099070 -114684402 + MIR SINE MIR 2 111 -151 1706 219 68 35 chr11 34099070 34099559 -114683913 + MLT1D LTR MaLR 1 505 0 214 273 117 0 chr11 34099792 34099869 -114683603 + MIR SINE MIR 57 142 -120 297 203 0 0 chr11 34100106 34100165 -114683307 - L2 LINE L2 -3 3310 3252 245 301 161 0 chr11 34100203 34100296 -114683176 - MER91A DNA MER1_type 0 196 89 231 88 0 0 chr11 34101182 34101216 -114682256 + (A)n Simple_repeat Simple_repeat 1 34 0 275 319 119 39 chr11 34101233 34101518 -114681954 - MLT1K LTR MaLR -67 521 214 607 272 48 28 chr11 34101700 34102034 -114681438 + LTR33 LTR ERVL 47 452 -69 737 208 157 20 chr11 34102052 34102249 -114681223 + MER58A DNA MER1_type 1 224 0 21 0 0 0 chr11 34102979 34103000 -114680472 + AT_rich Low_complexity Low_complexity 1 21 0 262 253 36 31 chr11 34103360 34103480 -114679992 + MIR SINE MIR 20 145 -63 254 243 207 18 chr11 34103524 34103635 -114679837 - L2 LINE L2 0 3272 3141 187 205 51 39 chr11 34103935 34104013 -114679459 - L2 LINE L2 -497 2817 2739 223 269 0 0 chr11 34104305 34104357 -114679115 + L2 LINE L2 3211 3262 -10 302 274 15 74 chr11 34105607 34105733 -114677739 + MER5A DNA MER1_type 1 120 -69 2441 73 7 0 chr11 34105733 34106033 -114677439 - AluSp SINE Alu -7 306 5 420 20 0 0 chr11 34106686 34106735 -114676737 + (TAA)n Simple_repeat Simple_repeat 1 49 0 415 148 10 40 chr11 34106776 34106877 -114676595 - L1MC5 LINE L1 -31 7930 7833 1956 151 7 3 chr11 34106897 34107202 -114676270 - AluSx SINE Alu -6 306 1 683 258 54 41 chr11 34107237 34107606 -114675866 - L1MC5 LINE L1 -233 7728 7355 268 313 94 39 chr11 34107695 34107928 -114675544 + L2 LINE L2 1706 1951 -1363 497 292 32 50 chr11 34108158 34108436 -114675036 - MLT1H1 LTR MaLR -273 282 11 363 283 122 69 chr11 34108483 34108965 -114674507 + L2 LINE L2 1984 2504 -810 207 0 0 0 chr11 34108965 34108988 -114674484 + (TC)n Simple_repeat Simple_repeat 2 24 0 363 283 122 69 chr11 34108988 34109088 -114674384 + L2 LINE L2 2504 2597 -717 383 266 136 34 chr11 34109304 34109481 -114673991 + L2 LINE L2 2582 2776 -538 261 0 0 0 chr11 34109483 34109512 -114673960 + (CAA)n Simple_repeat Simple_repeat 2 30 0 180 0 0 0 chr11 34109512 34109532 -114673940 + (A)n Simple_repeat Simple_repeat 1 20 0 2344 121 30 30 chr11 34109565 34109929 -114673543 - THE1B LTR MaLR 0 364 1 1047 270 124 39 chr11 34109955 34110343 -114673129 - MLT1L LTR MaLR -17 598 151 2501 102 34 11 chr11 34110343 34110697 -114672775 + THE1B LTR MaLR 1 362 -2 1047 270 124 39 chr11 34110697 34110842 -114672630 - MLT1L LTR MaLR -464 151 20 587 177 62 8 chr11 34111031 34111161 -114672311 - MER34B LTR ERV1 -5 560 424 694 291 54 25 chr11 34111173 34111489 -114671983 - LTR24B LTR ERV1 -7 569 245 435 171 2 30 chr11 34111562 34111656 -114671816 - LTR24B LTR ERV1 -367 98 9 885 203 27 0 chr11 34111666 34111853 -114671619 - MER34B LTR ERV1 -159 406 215 391 203 0 130 chr11 34111885 34112023 -114671449 - MER34B LTR ERV1 -440 125 6 1292 139 24 20 chr11 34112094 34112475 -114670997 + MLT2A2 LTR ERVL 170 453 0 610 231 88 114 chr11 34112539 34112950 -114670522 + MLT1H LTR MaLR 138 537 -12 891 252 33 0 chr11 34113043 34113253 -114670219 + U3 snRNA snRNA 1 217 0 306 250 103 5 chr11 34113390 34113540 -114669932 + L1ME4a LINE L1 1187 6110 -8 245 219 14 0 chr11 34114107 34114180 -114669292 + CT-rich Low_complexity Low_complexity 3 76 0 1553 195 5 76 chr11 34114968 34115267 -114668205 - MLT1B LTR MaLR 0 390 128 2028 140 0 13 chr11 34115267 34115574 -114667898 - AluJb SINE Alu -9 303 1 1553 195 5 76 chr11 34115574 34115694 -114667778 - MLT1B LTR MaLR -262 128 1 586 253 31 12 chr11 34115767 34115997 -114667475 - L1MEc LINE L1 -4780 1864 1518 303 233 83 33 chr11 34116124 34116244 -114667228 - L1MEc LINE L1 -5168 1657 1532 2764 251 149 11 chr11 34117452 34118394 -114665078 - L1MEc LINE L1 -5288 1537 466 378 265 49 0 chr11 34118414 34118516 -114664956 - L2 LINE L2 -2 3270 3164 265 156 0 0 chr11 34118736 34118781 -114664691 - L2 LINE L2 -221 3051 3007 799 227 178 27 chr11 34118849 34119074 -114664398 + MLT1L LTR MaLR 1 259 -356 566 234 15 7 chr11 34119144 34119281 -114664191 + MLT1L LTR MaLR 447 584 -31 221 329 0 24 chr11 34119914 34119999 -114663473 + CT-rich Low_complexity Low_complexity 1 83 0 256 239 34 34 chr11 34120382 34120470 -114663002 + L2 LINE L2 2977 3064 -208 218 196 143 0 chr11 34120557 34120613 -114662859 + L2 LINE L2 3208 3271 -1 306 340 0 0 chr11 34120647 34120747 -114662725 + L2 LINE L2 3172 3271 -1 2199 92 20 0 chr11 34120949 34121241 -114662231 - AluSq SINE Alu -15 298 1 736 179 168 6 chr11 34121404 34121577 -114661895 - MER3 DNA MER1_type -3 206 6 349 228 131 48 chr11 34121635 34121780 -114661692 + Charlie8 DNA MER1_type 83 239 -2178 25 0 0 0 chr11 34122923 34122948 -114660524 + GC_rich Low_complexity Low_complexity 1 25 0 2282 75 9 38 chr11 34123295 34123614 -114659858 + AluSx SINE Alu 3 312 0 237 291 38 25 chr11 34124549 34124628 -114658844 - L2 LINE L2 0 3313 3234 348 274 250 40 chr11 34125563 34125815 -114657657 + MER102b DNA MER1_type 1 305 -36 451 240 123 7 chr11 34125975 34126121 -114657351 - MIR SINE MIR -60 202 40 232 167 0 0 chr11 34126204 34126252 -114657220 - L2 LINE L2 0 3313 3266 218 192 39 0 chr11 34126382 34126434 -114657038 + L2 LINE L2 3194 3247 -25 1457 177 0 61 chr11 34126526 34126693 -114656779 - AluJo SINE Alu -14 298 155 2429 68 0 3 chr11 34126693 34126987 -114656485 - AluY SINE Alu -18 293 1 1457 177 0 61 chr11 34126987 34127113 -114656359 - AluJo SINE Alu -157 155 23 510 229 25 8 chr11 34127944 34128062 -114655410 + MIR3 SINE MIR 38 157 -51 486 296 47 18 chr11 34128065 34128234 -114655238 + MER117 DNA MER1_type 1 174 -23 250 280 27 0 chr11 34129961 34130036 -114653436 - MLT1J2 LTR MaLR -3 447 371 439 262 163 60 chr11 34130110 34130319 -114653153 - MLT1J1 LTR MaLR -168 278 37 2369 90 0 10 chr11 34130319 34130618 -114652854 + AluSg SINE Alu 3 298 -12 439 262 163 60 chr11 34130618 34130660 -114652812 - MLT1J1 LTR MaLR -409 37 1 394 301 34 20 chr11 34133462 34133608 -114649864 + MIR SINE MIR 56 203 -59 240 172 92 69 chr11 34133823 34133910 -114649562 + MIR SINE MIR 124 212 -50 536 299 103 13 chr11 34133936 34134170 -114649302 + MIR SINE MIR 8 262 0 258 224 56 40 chr11 34134179 34134304 -114649168 - MIR SINE MIR -23 239 113 259 278 186 37 chr11 34137106 34137401 -114646071 + L2 LINE L2 2804 3142 -171 1124 198 109 70 chr11 34137402 34137832 -114645640 - MLT1C LTR MaLR 0 467 21 371 285 91 30 chr11 34137858 34138023 -114645449 + L2 LINE L2 3137 3311 -2 258 309 53 22 chr11 34138115 34138209 -114645263 - MIR SINE MIR -103 105 12 249 210 25 37 chr11 34139620 34139701 -114643771 - MIR SINE MIR -29 233 154 435 244 11 3 chr11 34139711 34139829 -114643643 - MLT1I LTR MaLR -10 428 315 424 211 18 46 chr11 34139898 34140007 -114643465 - MLT1I LTR MaLR -243 166 61 196 186 169 0 chr11 34140050 34140109 -114643363 - MIR SINE MIR -115 147 79 1085 282 25 11 chr11 34140263 34140547 -114642925 + MER115 DNA AcHobo 88 375 -318 1800 192 8 47 chr11 34140552 34140621 -114642851 + MLT1A1 LTR MaLR 1 71 -294 2897 105 32 32 chr11 34140621 34141086 -114642386 - MER4C LTR ERV1 0 465 1 1800 192 8 47 chr11 34141086 34141396 -114642076 + MLT1A1 LTR MaLR 71 365 0 2052 112 0 17 chr11 34141568 34141891 -114641581 + AluSg SINE Alu 1 318 0 343 284 58 31 chr11 34142054 34142247 -114641225 + MIR SINE MIR 4 203 -59 269 274 38 38 chr11 34142626 34142732 -114640740 - MIR SINE MIR -67 141 36 275 319 33 0 chr11 34142739 34142830 -114640642 + MIR SINE MIR 118 211 -51 232 242 0 16 chr11 34143053 34143115 -114640357 + MIR SINE MIR 122 182 -80 374 273 30 0 chr11 34143790 34143889 -114639583 + MIR SINE MIR 28 129 -133 21 0 0 0 chr11 34143889 34143910 -114639562 + AT_rich Low_complexity Low_complexity 1 21 0 422 127 42 0 chr11 34143910 34143981 -114639491 - U3 snRNA snRNA -142 75 2 325 217 38 38 chr11 34144012 34144118 -114639354 + MIR SINE MIR 157 262 0 353 80 0 0 chr11 34144124 34144174 -114639298 + MADE1 DNA Mariner 31 80 0 401 271 138 24 chr11 34144669 34144916 -114638556 + L1ME4a LINE L1 5843 6117 -4 1061 188 18 23 chr11 34145068 34145286 -114638186 - MLT1A1 LTR MaLR -17 348 132 238 167 30 45 chr11 34145286 34145352 -114638120 - HSMAR1 DNA Mariner 0 1287 1223 386 43 0 0 chr11 34145365 34145412 -114638060 + MADE1 DNA Mariner 34 80 0 474 197 162 26 chr11 34145412 34145529 -114637943 - MLT1A1 LTR MaLR -232 133 1 441 301 72 14 chr11 34145780 34145989 -114637483 - MIR SINE MIR -14 248 28 22 35 0 0 chr11 34146209 34146238 -114637234 + AT_rich Low_complexity Low_complexity 1 29 0 557 297 44 69 chr11 34146590 34146997 -114636475 - L2 LINE L2 -1 3271 2875 303 267 114 111 chr11 34147062 34147395 -114636077 - L2 LINE L2 -527 2787 2454 1326 161 117 22 chr11 34147483 34147757 -114635715 + AluJb SINE Alu 1 300 -2 264 229 0 48 chr11 34147890 34147973 -114635499 - L2 LINE L2 -991 2323 2245 262 353 19 6 chr11 34148522 34148678 -114634794 - MER5B DNA MER1_type 0 178 21 * 287 308 23 15 chr11 34148546 34148679 -114634793 + MER5A DNA MER1_type 37 170 -19 295 253 110 0 chr11 34148701 34148792 -114634680 - MIR3 SINE MIR -49 159 59 1743 166 27 7 chr11 34148800 34149063 -114634409 + AluJo SINE Alu 12 283 -29 1049 74 0 7 chr11 34149063 34149212 -114634260 + (GGAA)n Simple_repeat Simple_repeat 2 149 0 1743 166 27 7 chr11 34149212 34149243 -114634229 + AluJo SINE Alu 283 312 0 974 186 0 38 chr11 34150009 34150192 -114633280 + FRAM SINE Alu 1 176 0 228 353 98 8 chr11 34150404 34150526 -114632946 + MIR SINE MIR 2 134 -128 2333 112 3 0 chr11 34150539 34150851 -114632621 - AluSq SINE Alu 0 313 1 239 273 39 0 chr11 34150854 34150931 -114632541 + MIR SINE MIR 124 203 -59 2448 131 69 5 chr11 34151549 34151955 -114631517 + MSTB1 LTR MaLR 1 432 0 1231 216 98 6 chr11 34152097 34152412 -114631060 - MER2 DNA MER2_type 0 344 1 292 305 193 17 chr11 34152458 34152815 -114630657 - L2 LINE L2 -384 2930 2511 537 274 153 13 chr11 34154628 34154935 -114628537 - L1ME4a LINE L1 -12 6109 5760 238 237 91 20 chr11 34154945 34154961 -114628511 - L1MD3 LINE L1 0 8041 8028 1959 168 3 0 chr11 34154961 34155270 -114628202 - AluJb SINE Alu -2 310 1 238 237 91 20 chr11 34155270 34155507 -114627965 - L1MD3 LINE L1 -13 8028 7789 220 340 52 0 chr11 34155613 34155710 -114627762 - L2 LINE L2 -32 3281 3180 255 203 0 0 chr11 34155852 34155911 -114627561 + (TG)n Simple_repeat Simple_repeat 1 59 0 401 258 0 69 chr11 34156367 34156526 -114626946 - MIR SINE MIR -66 196 49 1630 215 18 12 chr11 34156572 34156823 -114626649 + L1ME1 LINE L1 4922 5170 -1000 1475 147 67 135 chr11 34156823 34157224 -114626248 + MLT1A2 LTR MaLR 1 374 0 1630 215 18 12 chr11 34157224 34157540 -114625932 + L1ME1 LINE L1 5170 5489 -681 * 1796 315 15 14 chr11 34157537 34158121 -114625351 + L1PA16 LINE L1 1 585 -6202 15316 219 30 9 chr11 34158217 34162643 -114620829 + L1PA16 LINE L1 1324 5860 -937 1152 119 0 0 chr11 34162645 34162821 -114620651 + L1PA16 LINE L1 5960 6135 -682 4025 149 21 9 chr11 34162945 34163240 -114620232 + L1PA16 LINE L1 6137 6427 -390 513 0 0 0 chr11 34163240 34163297 -114620175 + (TA)n Simple_repeat Simple_repeat 2 58 0 4025 149 21 9 chr11 34163297 34163671 -114619801 + L1PA16 LINE L1 6427 6814 -3 2439 203 38 72 chr11 34163703 34163741 -114619731 + L1ME1 LINE L1 5471 5509 -657 2658 109 3 11 chr11 34163741 34164108 -114619364 + THE1B LTR MaLR 1 364 0 2439 203 38 72 chr11 34164108 34164329 -114619143 + L1ME1 LINE L1 5509 5736 -430 5259 94 8 1 chr11 34164329 34165054 -114618418 - L1PB2 LINE L1 -2 6149 5420 2439 203 38 72 chr11 34165054 34165506 -114617966 + L1ME1 LINE L1 5736 6159 -7 583 292 196 6 chr11 34166441 34166763 -114616709 - L2 LINE L2 0 3272 2890 2132 125 0 3 chr11 34167046 34167343 -114616129 - AluSx SINE Alu 0 312 17 320 206 0 0 chr11 34167409 34167472 -114616000 - MLT1K LTR MaLR -15 573 511 1611 168 112 3 chr11 34167480 34167801 -114615671 + L1MB3 LINE L1 5821 6176 -7 942 254 55 99 chr11 34167839 34168272 -114615200 - MLT1K LTR MaLR -112 476 63 183 327 91 27 chr11 34168598 34168708 -114614764 - L2 LINE L2 -582 2732 2616 529 292 30 67 chr11 34168709 34169038 -114614434 - L2 LINE L2 -849 2465 2149 848 280 22 0 chr11 34169232 34169457 -114614015 + LTR16C LTR ERVL 253 482 -9 2645 43 0 3 chr11 34169599 34169903 -114613569 + AluY SINE Alu 1 303 -8 1227 240 69 68 chr11 34170258 34170710 -114612762 + MLT1H LTR MaLR 41 545 -4 2216 105 58 28 chr11 34170802 34171165 -114612307 - THE1C LTR MaLR -1 374 1 212 258 45 34 chr11 34171242 34171331 -114612141 - MIR SINE MIR -24 238 149 2163 210 65 102 chr11 34171845 34172565 -114610907 - MER63D DNA MER1_type -12 1049 378 1912 174 0 3 chr11 34172565 34172875 -114610597 - AluJb SINE Alu -3 309 1 2163 210 65 102 chr11 34172875 34173188 -114610284 - MER63D DNA MER1_type -683 378 55 286 321 170 9 chr11 34173326 34173438 -114610034 - MIR SINE MIR -115 147 18 504 114 0 0 chr11 34174122 34174192 -114609280 + THE1C LTR MaLR 272 341 -34 458 270 97 54 chr11 34174238 34174516 -114608956 - MLT1K LTR MaLR -14 574 285 2424 74 7 3 chr11 34175302 34175601 -114607871 - AluY SINE Alu -10 301 2 310 316 0 0 chr11 34176470 34176568 -114606904 + LTR29-int LTR ERV1 487 584 -6538 372 268 18 9 chr11 34176596 34176708 -114606764 + LTR29-int LTR ERV1 1505 1617 -5059 2135 140 30 33 chr11 34177009 34177374 -114606098 - THE1B LTR MaLR 0 364 1 273 180 0 0 chr11 34177552 34177602 -114605870 + LTR29-int LTR ERV1 2489 2538 -6440 254 213 0 0 chr11 34178340 34178387 -114605085 + LTR29-int LTR ERV1 3317 3363 -5615 592 319 58 18 chr11 34179100 34179442 -114604030 + LTR29-int LTR ERV1 2621 2976 -4146 677 170 0 0 chr11 34179443 34179549 -114603923 + AluJb SINE Alu 2 107 -205 550 271 51 71 chr11 34179554 34179797 -114603675 + LTR29-int LTR ERV1 4317 4552 -3874 2727 101 3 8 chr11 34179797 34180174 -114603298 - THE1C LTR MaLR 0 375 1 550 271 51 71 chr11 34180174 34180284 -114603188 + LTR29-int LTR ERV1 4552 4663 -3763 274 165 152 51 chr11 34180296 34180375 -114603097 + LTR29-int LTR ERV1 7730 7816 0 1735 176 231 53 chr11 34181300 34181828 -114601644 + LTR29 LTR ERV1 1 622 0 481 201 14 9 chr11 34182044 34182160 -114601312 - MIR SINE MIR -62 146 43 357 242 109 8 chr11 34182537 34182665 -114600807 + MIR SINE MIR 20 160 -102 201 100 0 0 chr11 34183197 34183227 -114600245 + L2 LINE L2 3267 3296 -17 213 333 11 21 chr11 34184195 34184288 -114599184 + L2 LINE L2 2967 3058 -214 184 209 0 0 chr11 34184506 34184549 -114598923 + L2 LINE L2 3269 3311 -2 237 259 0 17 chr11 34184864 34184922 -114598550 - LTR67 LTR ERVL 0 557 501 712 233 23 0 chr11 34185112 34185284 -114598188 - MER5A DNA MER1_type -12 177 2 1227 165 9 31 chr11 34185767 34185991 -114597481 + MER20 DNA MER1_type 1 219 0 565 241 115 11 chr11 34186091 34186282 -114597190 + MIR SINE MIR 48 258 -4 187 318 15 0 chr11 34186911 34186977 -114596495 - MIR3 SINE MIR 0 208 142 1645 174 10 39 chr11 34187419 34187729 -114595743 - AluJb SINE Alu -11 301 1 400 123 31 0 chr11 34187846 34187911 -114595561 + MER58 DNA MER1_type 2354 2420 0 243 267 59 20 chr11 34187939 34188040 -114595432 - L1MEc LINE L1 -4792 1604 1500 321 275 58 0 chr11 34188290 34188410 -114595062 - L1MEc LINE L1 -5096 1109 983 1023 198 20 20 chr11 34188672 34188869 -114594603 + MER20 DNA MER1_type 23 219 0 310 294 287 0 chr11 34190168 34190311 -114593161 + MER91A DNA MER1_type 8 191 -5 242 172 16 62 chr11 34190541 34190605 -114592867 + LTR67 LTR ERVL 483 543 -14 326 298 12 0 chr11 34190628 34190712 -114592760 + L2 LINE L2 3188 3272 0 2200 119 7 0 chr11 34191053 34191348 -114592124 + AluSx SINE Alu 1 297 -15 5463 136 30 24 chr11 34191348 34192243 -114591229 - MER49 LTR ERV1 -22 901 1 221 309 71 1 chr11 34192291 34192400 -114591072 - MIR SINE MIR -79 129 12 273 253 69 11 chr11 34194299 34194386 -114589086 + MIR SINE MIR 34 125 -137 325 73 0 0 chr11 34195465 34195506 -114587966 + 5S rRNA rRNA 2 42 -79 446 276 9 0 chr11 34196006 34196122 -114587350 + MER69A DNA AcHobo 2 118 -59 21 0 0 0 chr11 34196122 34196143 -114587329 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr11 34196615 34196644 -114586828 + AT_rich Low_complexity Low_complexity 1 29 0 298 292 31 39 chr11 34196905 34197035 -114586437 - MIR SINE MIR -70 192 64 2179 115 3 0 chr11 34197185 34197480 -114585992 + AluSx SINE Alu 1 296 -16 338 132 0 0 chr11 34199206 34199259 -114584213 + L2 LINE L2 3248 3300 -13 216 0 0 0 chr11 34199259 34199283 -114584189 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 222 232 130 0 chr11 34199319 34199388 -114584084 - MIR SINE MIR -140 122 45 195 327 211 0 chr11 34199449 34199553 -114583919 - L2 LINE L2 -9 3263 3138 956 150 237 23 chr11 34200575 34200841 -114582631 - MER33 DNA MER1_type -1 323 1 288 202 31 116 chr11 34201287 34201416 -114582056 - MLT1K LTR MaLR -2 586 469 450 278 83 57 chr11 34201536 34201766 -114581706 - MLT1K LTR MaLR -284 304 69 246 216 204 11 chr11 34202513 34202601 -114580871 + L2 LINE L2 3204 3308 -5 1453 51 0 0 chr11 34203120 34203295 -114580177 + AluY SINE Alu 137 311 0 288 319 57 28 chr11 34205081 34205222 -114578250 + MIR3 SINE MIR 30 174 -34 1583 193 41 0 chr11 34205277 34205452 -114578020 - AluJo SINE Alu -5 307 114 324 0 0 0 chr11 34205452 34205488 -114577984 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1583 193 41 0 chr11 34205488 34205607 -114577865 - AluJo SINE Alu -198 114 1 2565 71 0 0 chr11 34205943 34206254 -114577218 - AluY SINE Alu 0 311 1 1943 169 3 6 chr11 34206268 34206581 -114576891 - AluJb SINE Alu 0 312 1 37 23 0 0 chr11 34208485 34208529 -114574943 + AT_rich Low_complexity Low_complexity 1 44 0 1960 151 0 0 chr11 34208793 34209103 -114574369 - AluSx SINE Alu 0 314 5 2278 96 0 26 chr11 34210927 34211229 -114572243 - AluSx SINE Alu -18 294 1 440 302 112 20 chr11 34211655 34212013 -114571459 + L1ME4a LINE L1 5558 5948 -173 1946 163 41 0 chr11 34212016 34212335 -114571137 + MER7A DNA MER2_type 17 346 0 233 330 34 11 chr11 34212335 34212511 -114570961 + L1ME4a LINE L1 5939 6118 -3 2210 97 38 0 chr11 34212602 34212768 -114570704 - AluSx SINE Alu -13 299 116 261 22 65 0 chr11 34212768 34212814 -114570658 + T-rich Low_complexity Low_complexity 2 50 0 2210 97 38 0 chr11 34212814 34212935 -114570537 - AluSx SINE Alu -196 116 1 715 252 147 72 chr11 34213603 34214072 -114569400 + MLT1J LTR MaLR 8 511 0 420 315 38 38 chr11 34214780 34215015 -114568457 - MIR SINE MIR 0 262 28 312 148 0 0 chr11 34215727 34215788 -114567684 + (TC)n Simple_repeat Simple_repeat 2 62 0 207 328 56 8 chr11 34216911 34217036 -114566436 + L2 LINE L2 3139 3269 -3 434 360 45 19 chr11 34217601 34217979 -114565493 + L2 LINE L2 2457 2844 -470 576 220 101 12 chr11 34218718 34218886 -114564586 + MIR SINE MIR 36 218 -44 2039 128 7 3 chr11 34218932 34219222 -114564250 - AluSx SINE Alu -21 291 1 592 311 104 0 chr11 34219459 34219681 -114563791 + MIR SINE MIR 6 250 -12 427 186 62 0 chr11 34219692 34219789 -114563683 - L2 LINE L2 -8 3305 3203 1298 136 4 53 chr11 34220891 34221119 -114562353 + MER20 DNA MER1_type 1 217 -2 2501 64 17 0 chr11 34221485 34221781 -114561691 - AluY SINE Alu -10 301 1 288 294 63 35 chr11 34222032 34222175 -114561297 + MIR SINE MIR 104 250 -12 296 285 40 117 chr11 34222860 34222953 -114560519 + MIR SINE MIR 33 132 -130 2108 134 0 28 chr11 34222953 34223273 -114560199 - AluJo SINE Alu -1 311 1 296 285 40 117 chr11 34223273 34223318 -114560154 + MIR SINE MIR 132 179 -83 2479 175 33 9 chr11 34223318 34223774 -114559698 + MLT1C LTR MaLR 1 467 0 296 285 40 117 chr11 34223774 34223883 -114559589 + MIR SINE MIR 179 262 0 225 275 43 0 chr11 34224760 34224829 -114558643 + L2 LINE L2 3000 3071 -201 570 266 90 65 chr11 34224993 34225610 -114557862 - L1ME4a LINE L1 -1 6120 5445 210 207 49 12 chr11 34225710 34225792 -114557680 + (TTATA)n Simple_repeat Simple_repeat 2 86 0 204 176 0 0 chr11 34225837 34225871 -114557601 - MIR SINE MIR -22 240 207 25 0 0 0 chr11 34226001 34226026 -114557446 + AT_rich Low_complexity Low_complexity 1 25 0 502 307 37 37 chr11 34226048 34226263 -114557209 - MIR SINE MIR -46 216 2 2240 103 10 0 chr11 34226666 34226966 -114556506 + AluY SINE Alu 1 303 -8 387 244 89 7 chr11 34227000 34227181 -114556291 - MIR SINE MIR -11 251 30 613 291 58 17 chr11 34228069 34228310 -114555162 - MIR SINE MIR -11 251 1 2471 187 63 73 chr11 34228455 34228471 -114555001 - MER63C DNA MER1_type -229 831 816 932 134 0 32 chr11 34228471 34228628 -114554844 + L1MA9 LINE L1 6159 6310 -2 2471 187 63 73 chr11 34228628 34229326 -114554146 - MER63C DNA MER1_type -244 816 124 540 163 203 0 chr11 34229361 34229484 -114553988 - MER63C DNA MER1_type -782 148 1 849 149 22 8 chr11 34229991 34230125 -114553347 + AluJo SINE Alu 1 136 -176 1626 193 13 10 chr11 34230131 34230442 -114553030 + AluJo SINE Alu 1 312 0 243 88 0 0 chr11 34231502 34231536 -114551936 + (A)n Simple_repeat Simple_repeat 1 34 0 3108 162 14 21 chr11 34232543 34233061 -114550411 + MLT2B2 LTR ERVL 2 515 0 397 236 22 0 chr11 34233218 34233307 -114550165 - MER94 DNA DNA -40 94 4 2235 95 17 7 chr11 34233432 34233727 -114549745 - AluJo SINE Alu -14 298 1 2151 126 0 3 chr11 34233992 34234294 -114549178 + AluSx SINE Alu 1 301 -11 1587 172 17 20 chr11 34234349 34234645 -114548827 + AluJo SINE Alu 1 295 -17 2094 112 0 17 chr11 34234676 34234971 -114548501 + AluSc SINE Alu 1 290 -19 353 254 115 0 chr11 34235136 34235258 -114548214 - MIR SINE MIR -41 221 86 2015 125 6 52 chr11 34235674 34236001 -114547471 - AluSx SINE Alu 0 312 1 1271 205 121 34 chr11 34236009 34236390 -114547082 - MLT2D LTR ERVL 0 414 1 347 271 75 19 chr11 34236907 34237014 -114546458 - MIR SINE MIR -121 141 29 231 88 0 0 chr11 34237293 34237327 -114546145 + (CA)n Simple_repeat Simple_repeat 1 34 0 246 32 0 0 chr11 34237749 34237780 -114545692 + (ATG)n Simple_repeat Simple_repeat 1 31 0 721 265 48 30 chr11 34237817 34238047 -114545425 - MIR SINE MIR -13 249 16 444 19 0 0 chr11 34238047 34238100 -114545372 + (TG)n Simple_repeat Simple_repeat 2 54 0 690 260 165 41 chr11 34238378 34238914 -114544558 + L2 LINE L2 2721 3306 -7 1771 152 14 24 chr11 34239045 34239342 -114544130 - AluJb SINE Alu -17 295 2 385 333 29 0 chr11 34239437 34239575 -114543897 - MIR3 SINE MIR -26 182 41 273 181 0 36 chr11 34240234 34240317 -114543155 + GA-rich Low_complexity Low_complexity 5 84 0 762 268 127 80 chr11 34240373 34240799 -114542673 + MLT1J LTR MaLR 1 507 -4 576 334 50 20 chr11 34240817 34241194 -114542278 + L2 LINE L2 1311 1702 -1612 243 0 0 0 chr11 34241194 34241221 -114542251 + (TAA)n Simple_repeat Simple_repeat 1 27 0 576 334 50 20 chr11 34241221 34241247 -114542225 + L2 LINE L2 1702 1726 -1588 343 259 101 22 chr11 34241451 34241590 -114541882 + MIR SINE MIR 39 188 -74 1265 242 83 54 chr11 34241607 34242140 -114541332 - LTR67 LTR ERVL -8 549 2 1864 149 0 20 chr11 34242232 34242533 -114540939 + AluJo SINE Alu 6 300 -12 2163 106 0 0 chr11 34242539 34242821 -114540651 + AluSx SINE Alu 18 299 -13 1704 151 17 20 chr11 34243433 34243551 -114539921 + AluJo SINE Alu 1 118 -194 471 18 0 0 chr11 34243551 34243607 -114539865 + (TA)n Simple_repeat Simple_repeat 2 57 0 1899 111 7 54 chr11 34243607 34243905 -114539567 - AluSx SINE Alu -28 284 1 1704 151 17 20 chr11 34243905 34244083 -114539389 + AluJo SINE Alu 116 297 -15 181 309 36 18 chr11 34244084 34244139 -114539333 - MIR SINE MIR -132 76 21 565 325 45 89 chr11 34245185 34245647 -114537825 - L2 LINE L2 0 3272 2831 21 0 0 0 chr11 34246197 34246218 -114537254 + AT_rich Low_complexity Low_complexity 1 21 0 767 229 64 0 chr11 34246864 34247052 -114536420 + MLT1J2 LTR MaLR 1 200 -250 1075 155 23 50 chr11 34247100 34247319 -114536153 + MER20 DNA MER1_type 1 213 -6 237 193 70 0 chr11 34247334 34247391 -114536081 + MLT1J1 LTR MaLR 271 331 -115 371 171 0 12 chr11 34247398 34247480 -114535992 + (CA)n Simple_repeat Simple_repeat 1 81 0 352 174 109 11 chr11 34247504 34247586 -114535886 + MLT1J2 LTR MaLR 360 446 0 2209 104 0 7 chr11 34248653 34248952 -114534520 + AluSx SINE Alu 1 297 -15 188 152 30 0 chr11 34249178 34249211 -114534261 - L2 LINE L2 -18 3254 3221 28 0 0 0 chr11 34249573 34249601 -114533871 + AT_rich Low_complexity Low_complexity 1 28 0 1664 159 17 41 chr11 34249651 34249760 -114533712 + AluJo SINE Alu 12 122 -190 2291 82 7 3 chr11 34249760 34250053 -114533419 - AluSp SINE Alu -19 294 1 1664 159 17 41 chr11 34250053 34250238 -114533234 + AluJo SINE Alu 122 299 -13 690 251 120 5 chr11 34250299 34250490 -114532982 - MIR SINE MIR -37 225 13 348 343 66 21 chr11 34250786 34251075 -114532397 + LTR16C LTR ERVL 190 491 0 2046 143 0 0 chr11 34251249 34251549 -114531923 - AluJb SINE Alu -7 305 6 818 214 6 19 chr11 34251556 34251715 -114531757 + MER58B DNA MER1_type 175 331 -10 2013 140 10 3 chr11 34251717 34252024 -114531448 + AluSx SINE Alu 1 309 -3 305 238 128 102 chr11 34252798 34253033 -114530439 - L2 LINE L2 -5 3267 3027 1583 176 61 0 chr11 34253694 34253972 -114529500 + AluJo SINE Alu 1 295 -17 392 239 143 57 chr11 34254004 34254213 -114529259 - MIR SINE MIR -34 228 2 180 0 0 0 chr11 34254225 34254245 -114529227 + (A)n Simple_repeat Simple_repeat 1 20 0 432 230 113 54 chr11 34254638 34254842 -114528630 + LTR33A LTR ERVL 1 216 -307 844 270 46 29 chr11 34254898 34255205 -114528267 + LTR33A LTR ERVL 210 521 -2 1615 75 232 0 chr11 34255455 34255696 -114527776 + AluSx SINE Alu 1 297 -15 583 309 56 28 chr11 34256607 34256859 -114526613 - MIR SINE MIR -3 259 1 1165 120 0 0 chr11 34258531 34258689 -114524783 - AluSq SINE Alu -20 293 136 4571 154 57 30 chr11 34258708 34259081 -114524391 + L1MB7 LINE L1 5147 5508 -676 2235 133 38 46 chr11 34259081 34259380 -114524092 + THE1B LTR MaLR 1 298 -66 2574 7 0 0 chr11 34259380 34259657 -114523815 - AluYa5 SINE Alu -2 309 33 2235 133 38 46 chr11 34259657 34259724 -114523748 + THE1B LTR MaLR 298 364 0 4571 154 57 30 chr11 34259724 34260342 -114523130 + L1MB7 LINE L1 5508 6168 -16 1134 276 38 0 chr11 34260345 34260606 -114522866 - LTR16C LTR ERVL -157 334 64 277 262 48 0 chr11 34260675 34260759 -114522713 + MIR SINE MIR 175 262 0 802 166 53 13 chr11 34261930 34262108 -114521364 - AluJb SINE Alu 0 312 137 279 0 0 0 chr11 34262247 34262278 -114521194 + (TG)n Simple_repeat Simple_repeat 2 32 0 2293 103 3 0 chr11 34262319 34262630 -114520842 - AluSp SINE Alu -1 312 1 904 257 120 22 chr11 34262722 34263146 -114520326 - L1ME4a LINE L1 -175 5946 5480 1742 179 0 29 chr11 34263951 34264263 -114519209 + AluJo SINE Alu 1 303 -9 6023 223 100 30 chr11 34264393 34264618 -114518854 + L1MC4 LINE L1 5254 5462 -2580 1311 191 167 8 chr11 34264618 34264875 -114518597 + AluJb SINE Alu 1 298 -4 6023 223 100 30 chr11 34264875 34265393 -114518079 + L1MC4 LINE L1 5462 5943 -2099 302 0 26 0 chr11 34265393 34265431 -114518041 + (ATG)n Simple_repeat Simple_repeat 1 39 0 6023 223 100 30 chr11 34265431 34266886 -114516586 + L1MC4 LINE L1 5943 7765 -277 1380 232 138 49 chr11 34266886 34267399 -114516073 + MER34B LTR ERV1 4 562 -3 6023 223 100 30 chr11 34267399 34267692 -114515780 + L1MC4 LINE L1 7765 8036 -6 1549 271 92 50 chr11 34267769 34268140 -114515332 + L1ME3A LINE L1 916 1270 -4859 1774 167 0 10 chr11 34268140 34268445 -114515027 + AluJo SINE Alu 1 302 -10 1549 271 92 50 chr11 34268445 34269541 -114513931 + L1ME3A LINE L1 1270 2449 -3680 633 285 47 0 chr11 34269651 34269865 -114513607 + L1ME3A LINE L1 2634 2857 -3272 2551 123 20 27 chr11 34269872 34270280 -114513192 + MSTB1 LTR MaLR 15 419 -13 702 260 56 39 chr11 34270292 34270583 -114512889 + L1ME3A LINE L1 2862 3164 -2965 1130 246 9 0 chr11 34270583 34270803 -114512669 - MER58A DNA MER1_type -1 223 2 702 260 56 39 chr11 34270803 34270923 -114512549 + L1ME3A LINE L1 3164 3280 -2849 21 71 0 0 chr11 34270923 34270965 -114512507 + AT_rich Low_complexity Low_complexity 1 42 0 1850 147 0 39 chr11 34271004 34271147 -114512325 + AluJb SINE Alu 1 127 -185 1278 66 6 6 chr11 34271147 34271313 -114512159 + L1PA6 LINE L1 5982 6147 -7 1850 147 0 39 chr11 34271313 34271475 -114511997 + AluJb SINE Alu 127 294 -18 326 217 33 42 chr11 34271476 34271596 -114511876 + L1ME3A LINE L1 3324 3442 -2687 611 70 0 0 chr11 34271727 34271822 -114511650 + AluSp/q SINE Alu 216 310 0 1643 245 78 56 chr11 34271823 34272651 -114510821 + L1ME3A LINE L1 4251 5097 -1032 1116 94 12 6 chr11 34272650 34272820 -114510652 + L1MA8 LINE L1 5992 6162 -129 * 779 117 66 15 chr11 34272873 34273010 -114510462 + L1MA8 LINE L1 6144 6287 -4 2890 243 75 21 chr11 34273112 34273610 -114509862 + L1ME3A LINE L1 5237 5803 -350 399 89 0 0 chr11 34273610 34273666 -114509806 + (TGAA)n Simple_repeat Simple_repeat 2 57 0 2890 243 75 21 chr11 34273666 34274029 -114509443 + L1ME3A LINE L1 5803 6145 -8 27 0 0 0 chr11 34275674 34275701 -114507771 + AT_rich Low_complexity Low_complexity 1 27 0 367 314 95 0 chr11 34276176 34276313 -114507159 + L2 LINE L2 2904 3053 -219 439 248 74 78 chr11 34276382 34276652 -114506820 - L2 LINE L2 -48 3265 2997 297 357 103 0 chr11 34276708 34276834 -114506638 + L2 LINE L2 3133 3271 -1 391 229 50 101 chr11 34276964 34277143 -114506329 + Charlie7 DNA MER1_type 1 170 -2442 1645 149 9 62 chr11 34277277 34277598 -114505874 - AluJo SINE Alu -8 304 1 4971 108 51 23 chr11 34277652 34278469 -114505003 - Tigger3(Golem) DNA MER2_type 0 3029 2190 332 182 61 121 chr11 34278544 34278676 -114504796 + MLT1J LTR MaLR 236 359 -152 1325 171 120 0 chr11 34278780 34279055 -114504417 - AluSx SINE Alu -2 310 3 665 226 25 6 chr11 34279067 34279226 -114504246 + Charlie7 DNA MER1_type 845 1006 -1606 2248 65 0 31 chr11 34279292 34279628 -114503844 - AluY SINE Alu 0 327 1 279 253 137 53 chr11 34280050 34280240 -114503232 + L2 LINE L2 3108 3313 0 2472 30 40 10 chr11 34280272 34280573 -114502899 + AluY SINE Alu 1 310 -1 295 161 16 0 chr11 34280590 34280652 -114502820 + L1MA8 LINE L1 6227 6289 -2 204 286 36 0 chr11 34281630 34281686 -114501786 + MIR SINE MIR 93 150 -112 * 479 279 199 43 chr11 34281680 34282002 -114501470 + L3 LINE CR1 810 1181 -396 1099 149 12 18 chr11 34282281 34282449 -114501023 + FAM SINE Alu 4 170 -5 183 328 82 0 chr11 34282726 34282787 -114500685 - L2 LINE L2 -55 3258 3193 290 292 22 0 chr11 34282820 34282909 -114500563 + L3 LINE CR1 1187 1277 -300 542 272 102 68 chr11 34283030 34283265 -114500207 + MIR SINE MIR 2 244 -18 1865 133 40 10 chr11 34283351 34283652 -114499820 - AluSx SINE Alu -2 310 1 1681 156 9 75 chr11 34284683 34285017 -114498455 + AluJo SINE Alu 1 312 0 21 0 0 0 chr11 34287474 34287495 -114495977 + AT_rich Low_complexity Low_complexity 1 21 0 501 194 21 90 chr11 34288198 34288342 -114495130 + MER103 DNA DNA 14 147 -19 480 171 23 0 chr11 34288348 34288436 -114495036 + L2 LINE L2 3224 3313 0 210 240 100 0 chr11 34289554 34289604 -114493868 - L2 LINE L2 -15 3257 3203 419 264 24 40 chr11 34289707 34289832 -114493640 - MIR SINE MIR -132 130 8 198 0 0 0 chr11 34290152 34290174 -114493298 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1473 169 0 4 chr11 34290181 34290418 -114493054 - AluJb SINE Alu -76 236 1 2052 269 30 34 chr11 34290743 34291337 -114492135 - MLT1E LTR MaLR -1 592 1 2370 68 3 0 chr11 34291356 34291649 -114491823 - AluY SINE Alu -17 294 1 1618 174 166 14 chr11 34292594 34292938 -114490534 - MSTD LTR MaLR 0 396 1 6952 216 74 44 chr11 34292938 34294622 -114488850 - MSTD-int LTR MaLR 0 1735 1 997 143 14 0 chr11 34294622 34294769 -114488703 - MSTD LTR MaLR 0 396 248 1815 146 14 0 chr11 34294771 34295052 -114488420 + MER49 LTR ERV1 1 285 -638 1494 211 8 50 chr11 34295082 34295442 -114488030 + MER4D LTR ERV1 549 893 -10 1282 177 59 13 chr11 34295450 34295687 -114487785 - MSTD LTR MaLR -147 249 2 304 345 97 15 chr11 34295731 34295937 -114487535 - L2 LINE L2 -258 3055 2833 236 353 59 17 chr11 34295949 34296068 -114487404 - L2 LINE L2 -647 2667 2544 2707 19 7 3 chr11 34296388 34296697 -114486775 + AluY SINE Alu 2 311 0 377 306 67 8 chr11 34296709 34296843 -114486629 - MIR3 SINE MIR -29 179 38 1273 148 28 106 chr11 34298727 34299010 -114484462 + AluJo SINE Alu 23 283 -29 186 43 0 0 chr11 34299010 34299033 -114484439 + (TGAA)n Simple_repeat Simple_repeat 2 24 0 342 49 0 0 chr11 34299844 34299885 -114483587 + L1PA16 LINE L1 5745 5785 -380 1437 149 88 54 chr11 34299889 34300184 -114483288 + AluJb SINE Alu 7 311 -1 228 163 0 0 chr11 34300199 34300242 -114483230 + G-rich Low_complexity Low_complexity 4 46 0 285 188 0 0 chr11 34300243 34300291 -114483181 + GA-rich Low_complexity Low_complexity 3 50 0 844 126 11 33 chr11 34300291 34300473 -114482999 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 2603 138 3 3 chr11 34300481 34300872 -114482600 + L1PA16 LINE L1 5770 6160 -6 23 0 0 0 chr11 34300918 34300941 -114482531 + AT_rich Low_complexity Low_complexity 1 23 0 2112 154 89 16 chr11 34302535 34302904 -114480568 + MSTD LTR MaLR 1 396 0 2188 128 0 7 chr11 34303507 34303811 -114479661 - AluSg SINE Alu -8 302 1 427 232 126 53 chr11 34304240 34304391 -114479081 + MIR3 SINE MIR 45 206 -2 2381 97 0 0 chr11 34304510 34304809 -114478663 + AluSg SINE Alu 1 299 -11 929 304 83 54 chr11 34305233 34305750 -114477722 - MLT1H LTR MaLR -15 534 3 341 250 122 67 chr11 34305927 34306091 -114477381 + MIR SINE MIR 16 188 -74 6127 173 20 14 chr11 34306111 34306772 -114476700 - Tigger6a DNA MER2_type -514 1083 411 2249 107 0 28 chr11 34306772 34307090 -114476382 - AluSc SINE Alu 0 309 1 6127 173 20 14 chr11 34307090 34307504 -114475968 - Tigger6a DNA MER2_type -1186 411 1 1006 301 53 28 chr11 34307878 34308274 -114475198 + MLT1J LTR MaLR 14 419 -92 1843 39 0 87 chr11 34308299 34308553 -114474919 - AluSc SINE Alu -2 307 76 727 291 124 34 chr11 34308789 34309336 -114474136 + L3 LINE CR1 819 1453 -124 227 290 32 86 chr11 34309466 34309529 -114473943 + L3 LINE CR1 1481 1546 -31 198 0 0 0 chr11 34309529 34309551 -114473921 + (TG)n Simple_repeat Simple_repeat 1 22 0 2088 126 0 0 chr11 34309551 34309828 -114473644 - AluSx SINE Alu -31 281 5 227 290 32 86 chr11 34309828 34309856 -114473616 + L3 LINE CR1 1544 1568 -9 694 315 139 20 chr11 34309957 34310309 -114473163 - MLT1K LTR MaLR 0 588 195 563 294 37 6 chr11 34312046 34312209 -114471263 - MIR SINE MIR -74 188 21 369 262 165 37 chr11 34312235 34312399 -114471073 - MIR SINE MIR -49 213 29 993 256 135 58 chr11 34312414 34312717 -114470755 + MLT1J LTR MaLR 1 354 -157 2172 123 0 7 chr11 34312717 34313019 -114470453 + AluSx SINE Alu 4 303 -9 993 256 135 58 chr11 34313019 34313183 -114470289 + MLT1J LTR MaLR 354 504 -7 21 36 0 0 chr11 34313882 34313910 -114469562 + AT_rich Low_complexity Low_complexity 1 28 0 2041 146 3 3 chr11 34313919 34314220 -114469252 + AluJb SINE Alu 1 301 -11 239 250 106 43 chr11 34314260 34314468 -114469004 + L1ME LINE L1 5602 5822 -299 11613 167 12 12 chr11 34314621 34314890 -114468582 + L1PA15 LINE L1 2947 3215 -2950 2178 104 0 24 chr11 34314890 34315188 -114468284 + AluSx SINE Alu 1 291 -21 11613 167 12 12 chr11 34315188 34317975 -114465497 + L1PA15 LINE L1 3215 6134 -31 193 28 0 56 chr11 34317975 34318011 -114465461 + (TAAAA)n Simple_repeat Simple_repeat 1 34 0 503 271 50 52 chr11 34318020 34318382 -114465090 + L1MC5 LINE L1 7377 7737 -224 323 258 23 39 chr11 34318376 34318504 -114464968 + L1MC5 LINE L1 7658 7783 -178 * 555 289 14 66 chr11 34318543 34318754 -114464718 + MIR SINE MIR 20 219 -43 299 351 80 7 chr11 34319452 34319603 -114463869 + MER5B DNA MER1_type 1 162 -16 2383 154 61 7 chr11 34319978 34320388 -114463084 + MSTB1 LTR MaLR 1 432 0 257 0 30 0 chr11 34321041 34321074 -114462398 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 1967 163 0 3 chr11 34321252 34321565 -114461907 + AluJb SINE Alu 1 312 0 239 164 91 0 chr11 34322037 34322092 -114461380 - L2 LINE L2 0 3313 3254 * 445 290 35 14 chr11 34322087 34322232 -114461240 + L2 LINE L2 2832 2979 -293 299 320 240 5 chr11 34322266 34322466 -114461006 + L2 LINE L2 2937 3183 -89 244 291 47 87 chr11 34322487 34322614 -114460858 + MIR SINE MIR 12 133 -129 312 182 102 31 chr11 34322614 34322725 -114460747 + L1M2 LINE L1 5658 5782 -509 1232 142 76 5 chr11 34322725 34322936 -114460536 + AluJo SINE Alu 84 309 -3 2125 179 29 11 chr11 34322937 34323316 -114460156 + L1PB4 LINE L1 5769 6154 -2 282 206 0 55 chr11 34323334 34323407 -114460065 + MIR SINE MIR 184 252 -10 2037 140 0 10 chr11 34323432 34323739 -114459733 + AluSx SINE Alu 7 310 -2 230 212 91 0 chr11 34323793 34323859 -114459613 + L1ME LINE L1 5195 5266 -880 606 274 137 57 chr11 34323877 34324009 -114459463 + L1ME LINE L1 5262 5382 -780 1351 181 87 32 chr11 34324009 34324286 -114459186 + AluJb SINE Alu 1 292 -20 2286 89 0 3 chr11 34324288 34324580 -114458892 + AluSc SINE Alu 15 305 -4 606 274 137 57 chr11 34324580 34324904 -114458568 + L1ME LINE L1 5382 5758 -404 1225 198 65 0 chr11 34325363 34325491 -114457981 - AluJo SINE Alu -49 263 145 405 0 0 0 chr11 34325491 34325536 -114457936 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 1225 198 65 0 chr11 34325536 34325654 -114457818 - AluJo SINE Alu -167 145 1 266 313 21 0 chr11 34325698 34325794 -114457678 + (TGGA)n Simple_repeat Simple_repeat 4 101 0 276 136 23 0 chr11 34325906 34325950 -114457522 + MER91 DNA MER1_type 65 109 -31 1133 124 57 11 chr11 34326207 34326517 -114456955 - THE1C LTR MaLR 0 375 1 336 24 0 0 chr11 34326946 34326987 -114456485 + (CA)n Simple_repeat Simple_repeat 2 42 0 950 264 143 36 chr11 34327021 34327520 -114455952 - MLT1H LTR MaLR 0 549 1 288 286 286 10 chr11 34329953 34330145 -114453327 - MIR SINE MIR -4 258 14 224 205 0 0 chr11 34330519 34330558 -114452914 + MIR SINE MIR 83 121 -87 2716 90 8 11 chr11 34330741 34331117 -114452355 + THE1C LTR MaLR 1 375 0 26 30 0 0 chr11 34331788 34331821 -114451651 + AT_rich Low_complexity Low_complexity 1 33 0 369 231 52 45 chr11 34332092 34332226 -114451246 + L1ME4a LINE L1 5959 6093 -28 3966 157 12 44 chr11 34332321 34333091 -114450381 + L1MB8 LINE L1 5429 6173 -5 290 226 19 138 chr11 34333509 34333668 -114449804 - MER5A DNA MER1_type 0 189 50 305 309 24 8 chr11 34333970 34334093 -114449379 - MIR3 SINE MIR -10 198 74 1816 124 43 43 chr11 34334629 34334761 -114448711 + AluSx SINE Alu 1 132 -180 2591 60 0 0 chr11 34334761 34335059 -114448413 + AluY SINE Alu 1 298 -13 1816 124 43 43 chr11 34335059 34335238 -114448234 + AluSx SINE Alu 131 312 0 25 0 0 0 chr11 34335399 34335424 -114448048 + AT_rich Low_complexity Low_complexity 1 25 0 296 295 0 0 chr11 34335620 34335698 -114447774 - MIR SINE MIR -143 119 42 275 198 136 12 chr11 34336698 34336779 -114446693 + L2 LINE L2 3223 3313 0 280 165 9 156 chr11 34336983 34337034 -114446438 - MARNA DNA Mariner -15 571 543 2095 126 24 0 chr11 34337034 34337328 -114446144 + AluSx SINE Alu 1 301 -11 280 165 9 156 chr11 34337328 34337385 -114446087 - MARNA DNA Mariner -43 543 479 449 230 72 20 chr11 34337517 34337669 -114445803 - MIR3 SINE MIR -8 200 41 372 200 21 50 chr11 34337930 34338035 -114445437 + MER113 DNA MER1_type? 1 103 -418 1993 139 0 26 chr11 34338035 34338344 -114445128 - AluJb SINE Alu -11 301 1 372 200 21 50 chr11 34338344 34338378 -114445094 + MER113 DNA MER1_type? 103 136 -385 2379 76 0 0 chr11 34339604 34339893 -114443579 - AluY SINE Alu -22 289 1 313 253 0 0 chr11 34339929 34340004 -114443468 - MIR SINE MIR 0 262 188 246 267 78 0 chr11 34340095 34340185 -114443287 + MIR3 SINE MIR 66 162 -46 288 237 153 46 chr11 34340188 34340319 -114443153 + MER117 DNA MER1_type 6 150 -47 815 209 9 53 chr11 34340585 34340810 -114442662 - L1MC5 LINE L1 -58 7903 7689 32 26 0 0 chr11 34341480 34341519 -114441953 + AT_rich Low_complexity Low_complexity 1 39 0 2011 129 4 0 chr11 34342234 34342514 -114440958 - AluSg SINE Alu -5 305 25 262 152 134 152 chr11 34342519 34342631 -114440841 - MIR SINE MIR -70 192 83 2378 89 0 0 chr11 34345317 34345608 -114437864 + AluSg SINE Alu 1 291 -19 181 224 41 20 chr11 34345632 34345681 -114437791 + MIR3 SINE MIR 108 157 -51 518 329 87 21 chr11 34346013 34346299 -114437173 - L3 LINE CR1 -582 995 691 238 295 62 9 chr11 34346468 34346580 -114436892 + MIR SINE MIR 10 127 -135 480 345 42 0 chr11 34346604 34346820 -114436652 - MIR SINE MIR 0 262 39 419 209 0 0 chr11 34347053 34347144 -114436328 + MIR SINE MIR 69 159 -103 237 143 32 16 chr11 34347226 34347289 -114436183 + (TTATA)n Simple_repeat Simple_repeat 1 64 0 213 163 0 20 chr11 34347482 34347531 -114435941 + MIR SINE MIR 159 206 -56 290 306 65 16 chr11 34348663 34348787 -114434685 + MIR3 SINE MIR 28 157 -51 367 257 38 55 chr11 34350409 34350594 -114432878 - MIR SINE MIR -65 143 10 2044 125 7 0 chr11 34350756 34351077 -114432395 + AluSq SINE Alu 2 324 0 1733 148 0 84 chr11 34352619 34352747 -114430725 + AluJo SINE Alu 1 138 -174 243 0 0 0 chr11 34352747 34352774 -114430698 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1733 148 0 84 chr11 34352774 34352799 -114430673 + AluJo SINE Alu 138 164 -148 1965 130 0 11 chr11 34352799 34353076 -114430396 + AluSq SINE Alu 1 274 -39 1733 148 0 84 chr11 34353076 34353253 -114430219 + AluJo SINE Alu 164 304 -8 237 269 0 0 chr11 34353791 34353843 -114429629 + L2 LINE L2 2594 2645 -669 2410 95 0 7 chr11 34354062 34354368 -114429104 + AluSg SINE Alu 1 304 -6 2015 75 10 78 chr11 34354521 34354814 -114428658 - AluSx SINE Alu -2 310 38 278 238 126 58 chr11 34355141 34355402 -114428070 + L1ME4a LINE L1 5843 6121 0 2457 197 20 18 chr11 34355538 34356035 -114427437 - MER119 DNA MER1_type 0 583 86 2439 60 0 32 chr11 34356035 34356349 -114427123 + AluSg SINE Alu 1 304 -6 255 79 0 0 chr11 34356378 34356416 -114427056 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 2551 144 7 16 chr11 34357107 34357349 -114426123 + L1MB3 LINE L1 5728 5966 -217 2483 83 0 0 chr11 34357349 34357649 -114425823 + AluSg SINE Alu 1 300 -10 2551 144 7 16 chr11 34357649 34357851 -114425621 + L1MB3 LINE L1 5966 6168 -15 407 327 53 35 chr11 34358630 34358969 -114424503 + L2 LINE L2 2414 2758 -556 228 303 11 45 chr11 34359390 34359479 -114423993 + L2 LINE L2 3187 3272 0 469 202 22 0 chr11 34359674 34359763 -114423709 - Tigger5 DNA MER2_type 0 2323 2233 * 1973 164 19 115 chr11 34359762 34360095 -114423377 + MER101 LTR ERV1 11 374 -100 1600 87 50 9 chr11 34360095 34360313 -114423159 + AluSc SINE Alu 71 297 -12 2050 100 43 0 chr11 34360315 34360594 -114422878 + AluSq SINE Alu 1 291 -22 1973 164 19 115 chr11 34360594 34360639 -114422833 + MER101 LTR ERV1 375 423 -51 1502 109 9 5 chr11 34360639 34360849 -114422623 + AluSc SINE Alu 83 293 -16 1973 164 19 115 chr11 34360849 34360979 -114422493 + MER101 LTR ERV1 423 474 0 276 111 0 93 chr11 34360979 34361027 -114422445 - Tigger5 DNA MER2_type -86 2237 2195 506 202 161 8 chr11 34361041 34361165 -114422307 - Tigger5 DNA MER2_type -2150 173 31 382 188 21 21 chr11 34361932 34362028 -114421444 - MIR SINE MIR -25 237 142 261 246 14 43 chr11 34362162 34362231 -114421241 - L2 LINE L2 -1 3271 3205 21 0 0 0 chr11 34363083 34363104 -114420368 + AT_rich Low_complexity Low_complexity 1 21 0 248 290 57 32 chr11 34363162 34363286 -114420186 - L2 LINE L2 -65 3248 3122 310 181 106 32 chr11 34363322 34363416 -114420056 - L2 LINE L2 -287 3026 2926 1765 126 4 4 chr11 34363461 34363708 -114419764 + AluSq SINE Alu 1 247 -66 817 129 16 0 chr11 34363708 34363832 -114419640 + AluSg/x SINE Alu 183 308 -4 2642 185 47 48 chr11 34366006 34366827 -114416645 - LTR27 LTR ERV1 -10 1010 3 1891 158 10 3 chr11 34366832 34367135 -114416337 + AluJo SINE Alu 1 305 -7 564 282 28 14 chr11 34367774 34367990 -114415482 + L1ME4a LINE L1 5642 5860 -261 2383 67 37 3 chr11 34368032 34368332 -114415140 - AluY SINE Alu -1 310 1 26 0 0 0 chr11 34368333 34368359 -114415113 + AT_rich Low_complexity Low_complexity 1 26 0 1126 227 328 0 chr11 34368363 34368838 -114414634 + HAL1 LINE L1 177 807 -1700 893 172 53 0 chr11 34368843 34368994 -114414478 - AluJb SINE Alu -17 295 137 662 251 104 108 chr11 34368994 34369428 -114414044 + HAL1 LINE L1 798 1232 -1275 2219 123 10 0 chr11 34369428 34369729 -114413743 - AluSq SINE Alu -9 304 1 662 251 104 108 chr11 34369729 34369761 -114413711 + HAL1 LINE L1 1232 1263 -1244 2204 103 0 4 chr11 34369761 34370042 -114413430 + AluSg SINE Alu 11 290 -20 662 251 104 108 chr11 34370042 34370065 -114413407 + HAL1 LINE L1 1263 1285 -1222 2901 10 0 0 chr11 34370065 34370374 -114413098 + AluYa5 SINE Alu 1 309 -2 662 251 104 108 chr11 34370374 34370432 -114413040 + HAL1 LINE L1 1285 1342 -1165 2173 96 4 0 chr11 34370432 34370749 -114412723 + AluSg SINE Alu 1 318 0 662 251 104 108 chr11 34370749 34370946 -114412526 + HAL1 LINE L1 1342 1543 -964 819 230 71 0 chr11 34370967 34371163 -114412309 - MIR SINE MIR -28 234 25 1400 238 73 66 chr11 34371186 34371297 -114412175 + HAL1 LINE L1 1543 1652 -855 225 0 0 0 chr11 34371297 34371322 -114412150 + (TG)n Simple_repeat Simple_repeat 2 26 0 1400 238 73 66 chr11 34371322 34372015 -114411457 + HAL1 LINE L1 1652 2507 0 480 226 56 72 chr11 34372529 34372724 -114410748 - MLT1K LTR MaLR -1 587 396 230 136 23 0 chr11 34372811 34372855 -114410617 - MLT1K LTR MaLR -395 193 149 639 239 97 92 chr11 34373989 34374370 -114409102 + MLT1J LTR MaLR 110 492 -19 687 296 106 55 chr11 34374503 34374939 -114408533 + MLT1K LTR MaLR 125 582 -6 597 264 28 0 chr11 34375143 34375325 -114408147 + MIR SINE MIR 73 259 -3 2192 83 3 64 chr11 34375471 34375797 -114407675 + AluY SINE Alu 1 306 -5 281 243 0 129 chr11 34377075 34377215 -114406257 - MIR SINE MIR -19 243 122 1138 222 101 11 chr11 34377858 34378283 -114405189 + MER113 DNA MER1_type? 16 521 0 478 219 44 18 chr11 34378353 34378467 -114405005 + MIR3 SINE MIR 73 189 -19 349 278 159 66 chr11 34378865 34379092 -114404380 + MIR SINE MIR 13 260 -2 1625 181 16 0 chr11 34379126 34379430 -114404042 - AluJb SINE Alu -3 309 1 1441 84 5 0 chr11 34380282 34380472 -114403000 - AluSp SINE Alu -10 303 113 292 384 9 0 chr11 34380664 34380776 -114402696 - L2 LINE L2 -5 3267 3155 290 291 32 111 chr11 34380832 34381021 -114402451 + MIR SINE MIR 75 248 -14 31 26 0 0 chr11 34381064 34381102 -114402370 + AT_rich Low_complexity Low_complexity 1 38 0 353 317 125 56 chr11 34381964 34382283 -114401189 - L2 LINE L2 -4 3268 2928 2175 117 7 0 chr11 34382329 34382636 -114400836 + AluSx SINE Alu 1 309 -3 363 244 160 23 chr11 34383560 34383691 -114399781 - MER5A DNA MER1_type 0 189 41 946 231 48 15 chr11 34383692 34384164 -114399308 - MLT1F1 LTR MaLR -1 566 1 572 298 92 9 chr11 34384217 34384297 -114399175 + MIR SINE MIR 16 88 -174 2205 84 20 0 chr11 34384297 34384594 -114398878 + AluSx SINE Alu 1 303 -9 572 298 92 9 chr11 34384594 34384741 -114398731 + MIR SINE MIR 88 262 0 379 297 10 10 chr11 34385045 34385146 -114398326 + MER5A DNA MER1_type 89 189 0 191 35 0 35 chr11 34385989 34386018 -114397454 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 236 241 120 95 chr11 34386025 34386183 -114397289 - L2 LINE L2 -19 3294 3133 2266 93 7 0 chr11 34387064 34387366 -114396106 - AluSp SINE Alu -9 304 1 23 33 0 0 chr11 34387373 34387403 -114396069 + AT_rich Low_complexity Low_complexity 1 30 0 433 305 35 23 chr11 34388731 34388905 -114394567 - MIR SINE MIR -66 196 21 787 308 21 4 chr11 34389065 34389305 -114394167 - MIR SINE MIR -10 252 9 946 157 24 0 chr11 34390834 34391000 -114392472 + L1MB5 LINE L1 5721 5890 -284 2058 115 0 14 chr11 34391084 34391380 -114392092 + AluSx SINE Alu 1 292 -20 688 268 12 0 chr11 34391384 34391552 -114391920 + L2 LINE L2 2534 2703 -611 2949 151 39 19 chr11 34391554 34392125 -114391347 - L1MB5 LINE L1 0 6174 5593 695 95 29 0 chr11 34392125 34392224 -114391248 - L1MA4A LINE L1 -5 6298 6191 2351 73 0 3 chr11 34392276 34392577 -114390895 + AluY SINE Alu 1 300 -11 212 203 34 0 chr11 34392580 34392705 -114390767 + (TA)n Simple_repeat Simple_repeat 1 129 0 1887 136 31 0 chr11 34392705 34392991 -114390481 - AluSx SINE Alu -17 295 1 2062 122 0 13 chr11 34393679 34393958 -114389514 + AluSc SINE Alu 1 277 -32 185 0 40 0 chr11 34393958 34393983 -114389489 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2062 122 0 13 chr11 34393983 34394015 -114389457 + AluSc SINE Alu 277 308 -1 276 329 0 0 chr11 34394172 34394245 -114389227 - L2 LINE L2 -21 3251 3179 2047 168 139 22 chr11 34394249 34394701 -114388771 - MLT1D LTR MaLR 0 505 1 1207 106 6 0 chr11 34394849 34395019 -114388453 + AluSg/x SINE Alu 137 307 -5 263 242 219 29 chr11 34395154 34395384 -114388088 - L2 LINE L2 -484 2830 2645 1939 123 0 28 chr11 34395384 34395701 -114387771 - AluSx SINE Alu -2 310 3 263 242 219 29 chr11 34395701 34395821 -114387651 - L2 LINE L2 -669 2645 2413 392 258 11 0 chr11 34395906 34395999 -114387473 + MIR SINE MIR 169 262 0 2901 169 15 78 chr11 34396311 34396867 -114386605 - LTR9 LTR ERV1 0 612 101 2077 61 79 0 chr11 34396867 34397147 -114386325 + AluSq SINE Alu 1 302 -11 2901 169 15 78 chr11 34397147 34397243 -114386229 - LTR9 LTR ERV1 -511 101 1 2227 90 0 6 chr11 34397296 34397608 -114385864 - AluY SINE Alu -1 310 1 2077 118 0 16 chr11 34398638 34398944 -114384528 + AluSc SINE Alu 1 301 -8 243 109 236 0 chr11 34399082 34399137 -114384335 - THE1B LTR MaLR 0 364 297 2000 128 53 35 chr11 34399202 34399521 -114383951 - THE1B LTR MaLR -39 325 1 11907 91 9 9 chr11 34399521 34401101 -114382371 - THE1B-int LTR MaLR 0 1580 1 2487 105 28 30 chr11 34401103 34401466 -114382006 - THE1B LTR MaLR -2 362 1 807 66 0 0 chr11 34401554 34401660 -114381812 + (GGAA)n Simple_repeat Simple_repeat 3 108 0 1769 153 7 10 chr11 34401754 34402055 -114381417 - AluJo SINE Alu -12 300 1 3044 203 26 49 chr11 34402287 34403049 -114380423 - L1ME2 LINE L1 0 6164 5420 1961 155 45 17 chr11 34403052 34403407 -114380065 + MLT1A1 LTR MaLR 1 365 0 263 113 97 16 chr11 34403599 34403661 -114379811 + L1M4 LINE L1 5816 5882 -296 425 194 22 7 chr11 34403661 34403769 -114379703 + MER31B LTR ERV1 1 112 -373 384 40 0 0 chr11 34403771 34403821 -114379651 + (TG)n Simple_repeat Simple_repeat 2 51 0 692 174 0 0 chr11 34403823 34403932 -114379540 - FLAM_A SINE Alu -21 121 13 2014 113 0 7 chr11 34403966 34404257 -114379215 - AluSx SINE Alu -23 289 1 265 302 75 19 chr11 34404507 34404613 -114378859 + MIR SINE MIR 20 131 -77 527 173 182 0 chr11 34404715 34404825 -114378647 - MLT1C LTR MaLR -334 133 4 365 284 138 0 chr11 34404932 34405048 -114378424 + MIR3 SINE MIR 46 177 -31 327 49 0 0 chr11 34405089 34405130 -114378342 + (T)n Simple_repeat Simple_repeat 1 41 0 339 214 83 12 chr11 34405476 34405560 -114377912 - MIR SINE MIR -12 250 161 734 222 50 15 chr11 34405562 34405760 -114377712 + LTR41 LTR ERVL 1 205 -568 485 192 0 48 chr11 34406269 34406394 -114377078 + LTR41 LTR ERVL 654 772 -1 421 307 47 13 chr11 34406395 34406545 -114376927 - MIR SINE MIR -98 164 10 2167 109 6 3 chr11 34406679 34406990 -114376482 + AluSx SINE Alu 1 312 0 298 206 0 68 chr11 34407589 34407662 -114375810 + MIR3 SINE MIR 12 79 -129 524 233 13 88 chr11 34407775 34407892 -114375580 - MIR SINE MIR 0 262 159 2180 91 7 0 chr11 34407892 34408188 -114375284 - AluSc SINE Alu -11 298 1 524 233 13 88 chr11 34408188 34408229 -114375243 - MIR SINE MIR -103 159 116 505 263 58 45 chr11 34408454 34408610 -114374862 - MIR SINE MIR -48 214 57 389 188 104 73 chr11 34409233 34409329 -114374143 + MER63 DNA MER1_type 27 751 -85 422 70 18 0 chr11 34409423 34409480 -114373992 + Alu SINE Alu 2 59 -259 324 343 188 39 chr11 34409623 34409870 -114373602 + L2 LINE L2 2886 3197 -75 1907 156 82 30 chr11 34409870 34410275 -114373197 + MSTA LTR MaLR 3 428 0 324 343 188 39 chr11 34410275 34410362 -114373110 + L2 LINE L2 3197 3270 -2 308 344 133 6 chr11 34411671 34411851 -114371621 - MIR SINE MIR 0 262 60 396 301 90 15 chr11 34414095 34414228 -114369244 + MIR SINE MIR 4 146 -116 1026 160 5 56 chr11 34415552 34415765 -114367707 - MER20 DNA MER1_type 0 219 18 285 290 0 11 chr11 34416422 34416515 -114366957 + MER5A DNA MER1_type 11 102 -87 2216 74 0 3 chr11 34416675 34416958 -114366514 + AluSg SINE Alu 10 291 -19 886 131 0 0 chr11 34416975 34417105 -114366367 + AluSg/x SINE Alu 125 254 -56 407 192 136 33 chr11 34417167 34417318 -114366154 + MIR SINE MIR 25 188 -63 321 258 101 14 chr11 34417889 34418072 -114365400 - MIR SINE MIR -10 252 3 316 0 45 0 chr11 34419273 34419317 -114364155 + (CA)n Simple_repeat Simple_repeat 2 47 0 412 252 205 62 chr11 34421180 34421390 -114362082 - MIR SINE MIR -3 259 20 477 238 47 2 chr11 34422121 34422243 -114361229 + MIR SINE MIR 30 166 -63 1644 155 11 21 chr11 34422243 34422561 -114360911 - AluJb SINE Alu 0 315 1 23 33 0 0 chr11 34423076 34423106 -114360366 + AT_rich Low_complexity Low_complexity 1 30 0 237 298 158 0 chr11 34424284 34424398 -114359074 + MIR SINE MIR 123 254 -8 1694 161 16 16 chr11 34425168 34425472 -114358000 - AluJo SINE Alu -8 304 1 186 211 228 0 chr11 34425885 34425942 -114357530 + MIR SINE MIR 177 246 -16 1939 109 42 0 chr11 34426757 34427041 -114356431 - AluSx SINE Alu -16 296 1 213 252 81 45 chr11 34428471 34428582 -114354890 - MIR3 SINE MIR -3 205 91 1620 187 3 13 chr11 34428594 34428899 -114354573 - AluJb SINE Alu -10 302 1 666 300 16 16 chr11 34429841 34430031 -114353441 + MIR SINE MIR 2 191 -71 2009 160 55 3 chr11 34430039 34430154 -114353318 + L1MC2 LINE L1 5832 5940 -404 2618 61 0 3 chr11 34430154 34430466 -114353006 + AluY SINE Alu 1 311 0 2009 160 55 3 chr11 34430466 34430732 -114352740 + L1MC2 LINE L1 5940 6233 -111 194 289 0 0 chr11 34430750 34430795 -114352677 + MIR SINE MIR 199 243 -19 2905 145 84 19 chr11 34432188 34432780 -114350692 + L1MB8 LINE L1 5548 6178 0 2185 125 3 0 chr11 34432822 34433119 -114350353 - AluSx SINE Alu -14 298 1 200 203 31 62 chr11 34433119 34433183 -114350289 - MER5B DNA MER1_type -115 63 2 1668 182 23 17 chr11 34433828 34434130 -114349342 - AluJo SINE Alu -8 304 1 376 279 274 6 chr11 34434634 34434813 -114348659 - L3 LINE CR1 -4 1573 1347 2166 89 10 20 chr11 34434852 34435156 -114348316 - AluY SINE Alu -10 301 1 2371 81 10 0 chr11 34435271 34435569 -114347903 + AluSg SINE Alu 1 301 -9 658 335 133 24 chr11 34435832 34436283 -114347189 - L3 LINE CR1 -955 622 123 455 295 47 21 chr11 34436479 34436672 -114346800 - Charlie8 DNA MER1_type -2184 233 36 333 190 0 0 chr11 34436678 34436736 -114346736 + AluSp/q SINE Alu 233 290 -13 263 161 59 0 chr11 34436736 34436854 -114346618 + (TA)n Simple_repeat Simple_repeat 2 126 0 277 266 221 26 chr11 34436878 34437032 -114346440 + MIR SINE MIR 69 252 -10 441 243 36 27 chr11 34437047 34437158 -114346314 - MIR SINE MIR -108 154 43 1977 121 0 134 chr11 34437437 34437826 -114345646 - MER1B DNA MER1_type 0 337 1 25 0 0 0 chr11 34437901 34437926 -114345546 + AT_rich Low_complexity Low_complexity 1 25 0 2446 93 0 0 chr11 34438096 34438406 -114345066 + AluSx SINE Alu 1 310 -2 225 178 0 0 chr11 34439139 34439184 -114344288 + A-rich Low_complexity Low_complexity 1 45 0 2084 117 38 0 chr11 34439220 34439510 -114343962 + AluSx SINE Alu 1 301 -11 2319 106 0 6 chr11 34439511 34439909 -114343563 + AluSx SINE Alu 2 397 0 283 295 17 35 chr11 34439911 34440084 -114343388 + L1MC5 LINE L1 7354 7523 -438 21 0 0 0 chr11 34440443 34440464 -114343008 + AT_rich Low_complexity Low_complexity 1 21 0 403 261 97 70 chr11 34440503 34440735 -114342737 + L1M4 LINE L1 5030 5271 -875 1595 156 87 28 chr11 34440735 34441024 -114342448 - AluJo SINE Alu -5 307 2 403 261 97 70 chr11 34441024 34441048 -114342424 + L1M4 LINE L1 5271 5293 -853 707 230 53 129 chr11 34441049 34441197 -114342275 + L2 LINE L2 1502 1660 -1654 2230 115 3 16 chr11 34441197 34441510 -114341962 - AluSx SINE Alu -3 309 1 707 230 53 129 chr11 34441510 34441756 -114341716 + L2 LINE L2 1660 1866 -1448 322 196 54 108 chr11 34441828 34441976 -114341496 + L1ME4a LINE L1 5982 6121 0 234 0 0 0 chr11 34442348 34442374 -114341098 + (CA)n Simple_repeat Simple_repeat 2 27 0 320 331 99 6 chr11 34442740 34442912 -114340560 + L1ME4a LINE L1 5930 6117 -4 720 208 48 39 chr11 34444864 34445095 -114338377 - MER112 DNA MER1_type -16 244 12 458 299 80 49 chr11 34445120 34445344 -114338128 + MIR SINE MIR 21 251 -11 180 0 0 0 chr11 34445552 34445572 -114337900 + (TTTTG)n Simple_repeat Simple_repeat 5 24 0 1878 154 0 7 chr11 34445575 34445854 -114337618 - AluJb SINE Alu -35 277 1 2200 127 0 0 chr11 34445874 34446173 -114337299 + AluSx SINE Alu 5 303 -9 200 323 0 0 chr11 34446553 34446618 -114336854 + GA-rich Low_complexity Low_complexity 4 68 0 2364 78 7 0 chr11 34446646 34446942 -114336530 + AluSp SINE Alu 1 298 -15 585 264 135 14 chr11 34448010 34448218 -114335254 + MIR SINE MIR 20 252 -10 2149 130 0 0 chr11 34450980 34451273 -114332199 - AluSx SINE Alu -19 293 1 228 200 0 0 chr11 34451366 34451406 -114332066 + Charlie5 DNA MER1_type 1 40 -2572 560 193 47 7 chr11 34451412 34451562 -114331910 + Charlie5 DNA MER1_type 2430 2585 -27 382 259 15 61 chr11 34451565 34451696 -114331776 + MIR SINE MIR 75 199 -63 312 237 93 10 chr11 34451774 34451871 -114331601 - MIR SINE MIR -51 211 107 195 42 0 0 chr11 34451960 34451984 -114331488 + (TAA)n Simple_repeat Simple_repeat 3 26 0 766 298 40 16 chr11 34454887 34455135 -114328337 + MIR SINE MIR 8 261 -1 2342 97 0 3 chr11 34455160 34455460 -114328012 + AluSc SINE Alu 1 299 -10 595 284 85 34 chr11 34455524 34455760 -114327712 + MIR SINE MIR 13 260 -2 2253 118 10 0 chr11 34456175 34456479 -114326993 + AluSx SINE Alu 1 307 -5 237 65 0 0 chr11 34461258 34461289 -114322183 + (A)n Simple_repeat Simple_repeat 1 31 0 621 69 0 0 chr11 34461684 34461771 -114321701 + (GA)n Simple_repeat Simple_repeat 2 88 0 1984 81 0 23 chr11 34462714 34462975 -114320497 - AluSx SINE Alu -10 302 48 193 161 0 0 chr11 34463193 34463224 -114320248 + MIR SINE MIR 46 76 -186 219 125 0 0 chr11 34466218 34466258 -114317214 + (CGG)n Simple_repeat Simple_repeat 2 41 0 225 159 0 0 chr11 34466693 34466737 -114316735 + (TGGG)n Simple_repeat Simple_repeat 1 44 0 268 188 0 0 chr11 34469747 34469795 -114313677 - MIR SINE MIR -57 151 104 630 226 54 59 chr11 34469811 34469997 -114313475 + MIR SINE MIR 8 192 -70 255 330 43 21 chr11 34470050 34470144 -114313328 - MIR3 SINE MIR -110 98 3 297 0 0 0 chr11 34471352 34471385 -114312087 + (A)n Simple_repeat Simple_repeat 1 33 0 180 77 0 0 chr11 34472745 34472771 -114310701 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 214 349 73 28 chr11 34472786 34472895 -114310577 - L2 LINE L2 -40 3232 3119 426 258 200 0 chr11 34473187 34473342 -114310130 + MIR SINE MIR 76 261 -1 351 303 62 0 chr11 34473736 34473857 -114309615 + MIR SINE MIR 34 162 -46 303 274 141 15 chr11 34473968 34474103 -114309369 + MIR SINE MIR 90 241 -21 720 332 45 0 chr11 34474214 34474458 -114309014 + MIR SINE MIR 6 260 -2 321 255 43 0 chr11 34475321 34475415 -114308057 - MER94 DNA DNA -21 113 16 26 0 0 0 chr11 34475430 34475456 -114308016 + AT_rich Low_complexity Low_complexity 1 26 0 2313 116 3 0 chr11 34475966 34476277 -114307195 - AluSx SINE Alu 0 312 1 1144 131 22 83 chr11 34476403 34476632 -114306840 + MER20 DNA MER1_type 1 215 -4 2333 85 3 3 chr11 34476667 34476972 -114306500 + AluY SINE Alu 1 305 -6 430 290 107 0 chr11 34478773 34478904 -114304568 - MIR3 SINE MIR 0 208 64 2339 85 10 0 chr11 34479103 34479396 -114304076 + AluSq SINE Alu 1 296 -17 194 152 0 43 chr11 34480462 34480508 -114302964 + CT-rich Low_complexity Low_complexity 4 47 0 231 315 105 7 chr11 34480550 34480693 -114302779 - MIR SINE MIR -48 214 58 416 284 56 27 chr11 34482110 34482297 -114301175 - MIR SINE MIR 0 262 66 2383 84 0 34 chr11 34482297 34482617 -114300855 + AluSc SINE Alu 1 309 0 416 284 56 27 chr11 34482617 34482638 -114300834 - MIR SINE MIR -196 66 47 238 257 129 0 chr11 34482723 34482793 -114300679 - LTR33 LTR ERVL -2 519 441 1229 144 86 0 chr11 34482818 34483005 -114300467 - AluSg/x SINE Alu -24 286 84 1296 256 42 21 chr11 34483005 34483430 -114300042 - LTR33 LTR ERVL -64 457 24 703 272 22 0 chr11 34483432 34483656 -114299816 - HAL1 LINE L1 -854 1653 1425 2006 94 56 10 chr11 34483715 34484003 -114299469 + AluY SINE Alu 1 301 -10 312 27 0 0 chr11 34485592 34485629 -114297843 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 297 366 38 8 chr11 34485633 34485764 -114297708 - L2 LINE L2 -17 3255 3121 1666 92 0 14 chr11 34485765 34485983 -114297489 + AluSq SINE Alu 75 289 -24 528 324 48 0 chr11 34486055 34486262 -114297210 - MIR SINE MIR -40 222 6 311 306 73 54 chr11 34486288 34486610 -114296862 - L2 LINE L2 -190 3082 2741 2257 115 0 0 chr11 34486892 34487180 -114296292 + AluSx SINE Alu 1 288 -24 1394 232 53 65 chr11 34487503 34488012 -114295460 + MLT1D LTR MaLR 1 503 -2 414 187 47 28 chr11 34488038 34488145 -114295327 - MER117 DNA MER1_type -48 149 41 622 231 66 23 chr11 34488273 34488471 -114295001 + MIR SINE MIR 45 252 -10 2413 89 3 10 chr11 34488535 34488849 -114294623 - AluSx SINE Alu 0 312 1 213 398 0 9 chr11 34488932 34489040 -114294432 - L2 LINE L2 -727 2587 2481 2297 104 0 0 chr11 34489348 34489647 -114293825 + AluSg SINE Alu 1 299 -11 2394 82 0 23 chr11 34489726 34490031 -114293441 - AluY SINE Alu -13 298 1 411 303 77 13 chr11 34490907 34491062 -114292410 + MIR3 SINE MIR 37 201 -7 227 252 25 76 chr11 34491119 34491165 -114292307 + L1ME4a LINE L1 5548 5595 -526 1588 177 0 47 chr11 34491165 34491345 -114292127 - AluJo SINE Alu -5 307 147 2216 86 45 0 chr11 34491345 34491635 -114291837 - AluY SINE Alu -8 303 1 1588 177 0 47 chr11 34491635 34491776 -114291696 - AluJo SINE Alu -165 147 1 227 252 25 76 chr11 34491776 34491848 -114291624 + L1ME4a LINE L1 5595 5660 -461 237 233 81 47 chr11 34491852 34491938 -114291534 + L1ME4a LINE L1 5685 5773 -2035 587 135 18 27 chr11 34492191 34492293 -114291179 + Charlie5 DNA MER1_type 12 114 -2510 2221 98 0 33 chr11 34492293 34492599 -114290873 - AluSg SINE Alu -14 296 1 1864 154 33 0 chr11 34492611 34492910 -114290562 - AluJb SINE Alu -3 309 1 1251 144 0 5 chr11 34492988 34493361 -114290111 + AluSg/x SINE Alu 110 310 0 209 180 20 0 chr11 34493870 34493920 -114289552 + GA-rich Low_complexity Low_complexity 3 53 0 208 219 0 0 chr11 34494288 34494329 -114289143 + L2 LINE L2 3205 3245 -27 2095 129 10 0 chr11 34494340 34494649 -114288823 - AluSx SINE Alu 0 312 1 2451 53 0 0 chr11 34494824 34495138 -114288334 - AluY SINE Alu 0 314 1 277 332 101 34 chr11 34495138 34495436 -114288036 - L2 LINE L2 -10 3303 2986 1717 182 3 3 chr11 34495920 34496216 -114287256 + AluJb SINE Alu 11 306 -6 904 238 32 11 chr11 34496290 34496572 -114286900 - L1MA4 LINE L1 -2 6298 6011 254 203 0 17 chr11 34496815 34496874 -114286598 - L1MC/D LINE L1 -2016 5792 5735 2289 89 0 7 chr11 34496912 34497193 -114286279 - AluSc SINE Alu -29 280 2 324 93 0 0 chr11 34498186 34498229 -114285243 - MADE1 DNA Mariner -37 43 1 324 219 52 0 chr11 34498280 34498376 -114285096 + L1ME4a LINE L1 6008 6108 -13 296 256 50 41 chr11 34498426 34498536 -114284936 + L1MD2 LINE L1 5051 5164 -982 2059 97 0 4 chr11 34498536 34498803 -114284669 + AluSx SINE Alu 1 266 -46 580 198 160 44 chr11 34498856 34499183 -114284289 + L1MD2 LINE L1 5149 5486 -744 613 173 0 0 chr11 34499188 34499292 -114284180 + FLAM_C SINE Alu 38 141 -2 2937 199 81 85 chr11 34499302 34499419 -114284053 + L1MD2 LINE L1 5495 5611 -748 1719 184 0 14 chr11 34499419 34499712 -114283760 - AluJb SINE Alu -23 289 1 2937 199 81 85 chr11 34499712 34500155 -114283317 + L1MD2 LINE L1 5611 6052 -307 2108 97 29 0 chr11 34500155 34500434 -114283038 - AluSq SINE Alu -26 287 1 2937 199 81 85 chr11 34500434 34500739 -114282733 + L1MD2 LINE L1 6052 6357 -2 1574 182 62 56 chr11 34500873 34500913 -114282559 - L1MB5 LINE L1 -10 6164 6126 1530 170 24 27 chr11 34500913 34501207 -114282265 - AluJo SINE Alu -19 293 1 1574 182 62 56 chr11 34501207 34501556 -114281916 - L1MB5 LINE L1 -48 6126 5773 418 194 0 0 chr11 34501583 34501650 -114281822 - AluJ/FLAM SINE Alu -244 68 2 183 156 0 0 chr11 34501687 34501719 -114281753 + CT-rich Low_complexity Low_complexity 2 33 0 2116 127 10 0 chr11 34501727 34502034 -114281438 - AluSg SINE Alu 0 310 1 434 345 0 25 chr11 34502781 34502981 -114280491 - MIR SINE MIR -12 250 56 2253 110 0 0 chr11 34503041 34503333 -114280139 + AluSx SINE Alu 10 301 -11 551 267 148 14 chr11 34503333 34503543 -114279929 + MIR SINE MIR 22 259 -3 641 283 108 0 chr11 34503848 34504060 -114279412 - ERVL LTR ERVL -5504 260 26 2462 65 16 7 chr11 34504060 34504368 -114279104 + AluY SINE Alu 1 311 0 715 144 9 9 chr11 34504410 34504521 -114278951 + MER66B LTR ERV1 373 483 -3 633 170 22 67 chr11 34504666 34504882 -114278590 + MER66A LTR ERV1 97 245 -233 1214 162 10 0 chr11 34504883 34505081 -114278391 - AluJb SINE Alu -10 302 103 299 250 221 15 chr11 34505426 34505562 -114277910 - MIR3 SINE MIR -43 165 2 1744 188 3 3 chr11 34505890 34506178 -114277294 + AluJb SINE Alu 5 292 -20 1153 135 0 0 chr11 34506291 34506454 -114277018 + AluSg/x SINE Alu 134 296 -16 2353 155 6 77 chr11 34506464 34506892 -114276580 - MER66B LTR ERV1 0 486 29 2087 122 34 3 chr11 34506892 34507186 -114276286 + AluSx SINE Alu 1 303 -9 2124 105 44 10 chr11 34507187 34507481 -114275991 + AluSp SINE Alu 1 304 -9 2353 155 6 77 chr11 34507481 34507573 -114275899 - MER66B LTR ERV1 -456 30 1 2259 113 0 0 chr11 34508422 34508722 -114274750 + AluY SINE Alu 1 300 -11 567 291 51 8 chr11 34508996 34509233 -114274239 - MIR SINE MIR -1 261 15 671 259 128 4 chr11 34511366 34511609 -114271863 - L1ME3A LINE L1 -229 5941 5669 2266 94 0 57 chr11 34511666 34511997 -114271475 + AluSx SINE Alu 1 312 0 681 255 82 57 chr11 34511999 34512224 -114271248 - LTR16C LTR ERVL -21 470 235 2682 49 0 0 chr11 34512224 34512532 -114270940 + AluY SINE Alu 1 308 -3 681 255 82 57 chr11 34512532 34512588 -114270884 - LTR16C LTR ERVL -256 235 182 441 70 0 0 chr11 34513187 34513281 -114270191 + Alu SINE Alu 225 318 0 798 206 6 6 chr11 34513843 34514008 -114269464 + FRAM SINE Alu 1 165 -11 1554 141 20 184 chr11 34514104 34514151 -114269321 - MLT2D LTR ERVL 0 414 361 279 0 0 0 chr11 34514151 34514182 -114269290 + (TG)n Simple_repeat Simple_repeat 2 32 0 1554 141 20 184 chr11 34514182 34514515 -114268957 - MLT2D LTR ERVL -53 361 131 2473 93 0 0 chr11 34514515 34514825 -114268647 + AluY SINE Alu 1 310 -1 1554 141 20 184 chr11 34514825 34514938 -114268534 - MLT2D LTR ERVL -283 131 1 539 313 38 0 chr11 34514942 34515102 -114268370 + MER117 DNA MER1_type 32 197 0 2408 109 0 0 chr11 34515201 34515513 -114267959 - AluSx SINE Alu 0 312 1 656 250 162 80 chr11 34515570 34516034 -114267438 + L1ME3A LINE L1 5669 6170 0 1032 114 0 0 chr11 34516268 34516400 -114267072 - AluSq/x SINE Alu -180 132 1 186 297 176 22 chr11 34516481 34516572 -114266900 - L2 LINE L2 -41 3231 3127 1768 171 0 14 chr11 34517505 34517798 -114265674 - AluJo SINE Alu -23 289 1 2243 108 0 7 chr11 34517961 34518256 -114265216 + AluSg SINE Alu 1 293 -17 530 153 0 0 chr11 34518290 34518375 -114265097 - FRAM SINE Alu -18 158 74 288 310 30 10 chr11 34518544 34518644 -114264828 - L2 LINE L2 0 3313 3212 367 158 79 0 chr11 34519019 34519095 -114264377 - L1MB3 LINE L1 -2 6181 6100 2078 133 0 7 chr11 34519107 34519400 -114264072 - AluSg SINE Alu -19 291 1 839 152 0 0 chr11 34519432 34519564 -114263908 - FLAM_C SINE Alu -1 132 1 2572 66 0 0 chr11 34519696 34520000 -114263472 - AluY SINE Alu -7 304 1 1824 115 4 0 chr11 34520468 34520721 -114262751 - AluSx SINE Alu 0 312 59 2254 77 10 7 chr11 34520934 34521231 -114262241 + AluSx SINE Alu 5 302 -10 483 75 0 0 chr11 34521413 34521480 -114261992 + L1MA7 LINE L1 6222 6288 -3 246 318 59 59 chr11 34522282 34522452 -114261020 - MIR3 SINE MIR -33 175 6 682 190 37 101 chr11 34522735 34522828 -114260644 - L1MC4 LINE L1 -262 7780 7683 1532 171 0 40 chr11 34522828 34523103 -114260369 - AluJb SINE Alu -47 265 2 682 190 37 101 chr11 34523103 34523277 -114260195 - L1MC4 LINE L1 -359 7683 7530 434 307 7 0 chr11 34524357 34524497 -114258975 + L1ME4a LINE L1 5696 5836 -285 1819 173 3 0 chr11 34524557 34524841 -114258631 - AluJo SINE Alu -27 285 1 2903 164 14 18 chr11 34525233 34525667 -114257805 + L1MB8 LINE L1 5466 5899 -285 2533 58 0 0 chr11 34525667 34525961 -114257511 + AluY SINE Alu 1 294 -17 2903 164 14 18 chr11 34525961 34526039 -114257433 + L1MB8 LINE L1 5899 5976 -208 1834 120 8 0 chr11 34526077 34526335 -114257137 + AluSq SINE Alu 1 260 -53 1704 150 0 4 chr11 34526713 34526980 -114256492 - AluSg SINE Alu -10 300 35 196 216 0 0 chr11 34527167 34527204 -114256268 - L2 LINE L2 0 3313 3277 1561 244 107 28 chr11 34527593 34528209 -114255263 + Charlie2a DNA MER1_type 1549 2213 -649 1035 121 0 20 chr11 34528227 34528376 -114255096 + AluSq/x SINE Alu 1 146 -166 748 219 285 17 chr11 34528382 34528589 -114254883 + Charlie2a DNA MER1_type 2343 2493 -369 2145 119 0 3 chr11 34528589 34528884 -114254588 + AluSx SINE Alu 1 294 -18 748 219 285 17 chr11 34528884 34529086 -114254386 + Charlie2a DNA MER1_type 2493 2862 0 837 118 65 20 chr11 34529249 34529402 -114254070 - MSTB LTR MaLR -73 353 194 22 0 0 0 chr11 34529415 34529437 -114254035 + AT_rich Low_complexity Low_complexity 1 22 0 1326 154 66 39 chr11 34529438 34529697 -114253775 - AluSx SINE Alu -46 266 1 1078 136 10 45 chr11 34529700 34529899 -114253573 - MSTB LTR MaLR -234 192 1 911 188 5 21 chr11 34529899 34530085 -114253387 + L1MB8 LINE L1 5971 6153 -25 2130 133 0 10 chr11 34530293 34530602 -114252870 - AluSg SINE Alu -4 306 1 1966 142 10 0 chr11 34531475 34531764 -114251708 - AluJb SINE Alu -20 292 1 198 191 0 0 chr11 34532081 34532123 -114251349 + A-rich Low_complexity Low_complexity 1 42 0 186 43 0 0 chr11 34533203 34533226 -114250246 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3737 108 39 25 chr11 34533415 34533935 -114249537 + MER1A DNA MER1_type 1 527 0 439 282 0 0 chr11 34534300 34534403 -114249069 - MER5A DNA MER1_type -83 106 4 2056 115 24 0 chr11 34535222 34535509 -114247963 + AluSq SINE Alu 1 294 -19 2052 96 0 0 chr11 34535517 34535777 -114247695 + AluSc SINE Alu 42 301 -8 2079 234 74 26 chr11 34536242 34536771 -114246701 - MLT1H1 LTR MaLR -1 554 1 477 90 0 0 chr11 34536905 34536972 -114246500 + (TTC)n Simple_repeat Simple_repeat 1 67 0 1375 174 33 26 chr11 34536972 34537242 -114246230 - AluJo SINE Alu -38 274 3 33 25 0 0 chr11 34537691 34537731 -114245741 + AT_rich Low_complexity Low_complexity 1 40 0 904 143 78 0 chr11 34538030 34538184 -114245288 + L1MB7 LINE L1 6003 6168 -16 2164 136 0 13 chr11 34540187 34540321 -114243151 + AluSx SINE Alu 1 135 -177 2167 109 3 0 chr11 34540321 34540604 -114242868 + AluSx SINE Alu 1 284 -28 261 0 0 0 chr11 34540604 34540633 -114242839 + (CA)n Simple_repeat Simple_repeat 2 30 0 2164 136 0 13 chr11 34540633 34540813 -114242659 + AluSx SINE Alu 133 312 0 363 155 0 0 chr11 34541543 34541601 -114241871 - MLT1C LTR MaLR -8 497 440 2400 95 7 0 chr11 34541601 34541948 -114241524 + AluSg SINE Alu 1 349 0 1134 208 88 60 chr11 34541948 34542343 -114241129 - MLT1C LTR MaLR -52 415 5 243 182 52 39 chr11 34542728 34542805 -114240667 + LTR33A LTR ERVL 446 523 0 26 30 0 0 chr11 34542834 34542867 -114240605 + AT_rich Low_complexity Low_complexity 1 33 0 1776 134 0 0 chr11 34542867 34543161 -114240311 + AluSx SINE Alu 30 323 0 1107 160 48 39 chr11 34543230 34543251 -114240221 + L1MC3 LINE L1 6006 6025 -1760 2274 92 7 0 chr11 34543251 34543545 -114239927 - AluSx SINE Alu -16 296 1 1107 160 48 39 chr11 34543545 34543754 -114239718 + L1MC3 LINE L1 6025 6238 -1547 2237 103 10 0 chr11 34543756 34544048 -114239424 + AluSx SINE Alu 3 297 -15 1124 141 0 0 chr11 34544048 34544211 -114239261 + AluSg/x SINE Alu 132 294 -16 525 196 10 0 chr11 34544212 34544314 -114239158 + L1MC3 LINE L1 6224 6326 -1459 897 279 17 86 chr11 34544470 34544715 -114238757 + MER102b DNA MER1_type 1 215 -1213 2209 99 3 10 chr11 34544715 34545019 -114238453 - AluSx SINE Alu -10 302 1 897 279 17 86 chr11 34545019 34545135 -114238337 + MER102b DNA MER1_type 215 337 -4 2518 67 0 6 chr11 34545338 34545651 -114237821 - AluY SINE Alu 0 311 1 1711 221 63 50 chr11 34547204 34547291 -114236181 - MLT1D LTR MaLR 0 505 421 2446 86 0 0 chr11 34547291 34547593 -114235879 - AluSg SINE Alu -8 302 1 1711 221 63 50 chr11 34547593 34547984 -114235488 - MLT1D LTR MaLR -84 421 21 2335 216 96 84 chr11 34548246 34548505 -114234967 + L1MC5 LINE L1 6693 6948 -1013 1999 136 7 0 chr11 34548505 34548792 -114234680 - AluSq SINE Alu -18 295 7 2335 216 96 84 chr11 34548792 34549185 -114234287 + L1MC5 LINE L1 6948 7363 -598 2109 104 0 0 chr11 34549185 34549481 -114233991 + AluY SINE Alu 16 311 0 2335 216 96 84 chr11 34549481 34549785 -114233687 + L1MC5 LINE L1 7363 7662 -299 1993 125 0 22 chr11 34549798 34550117 -114233355 - AluSx SINE Alu 0 312 1 4927 157 45 2 chr11 34550117 34550954 -114232518 - L1MC1 LINE L1 -3 6330 5458 1670 123 4 15 chr11 34550955 34551216 -114232256 + AluSx SINE Alu 54 311 -1 424 103 23 103 chr11 34551504 34551559 -114231913 + L1MA9 LINE L1 6002 6049 -263 1729 194 3 0 chr11 34551559 34551853 -114231619 + AluJo SINE Alu 1 295 -17 424 103 23 103 chr11 34551853 34551884 -114231588 + L1MA9 LINE L1 6049 6081 -231 2376 101 0 0 chr11 34551963 34552260 -114231212 - AluSg SINE Alu -13 297 1 621 142 44 0 chr11 34552451 34552564 -114230908 + L1MB8 LINE L1 6001 6118 -60 2041 143 16 0 chr11 34552931 34553238 -114230234 - AluSx SINE Alu 0 312 1 2195 119 3 0 chr11 34553245 34553548 -114229924 - AluSx SINE Alu -8 304 1 464 244 6 61 chr11 34553936 34554100 -114229372 - MIR SINE MIR -33 229 75 303 308 63 53 chr11 34554073 34554391 -114229081 + L2 LINE L2 2652 2972 -342 * 467 282 5 74 chr11 34554551 34554753 -114228719 + L2 LINE L2 3107 3294 -19 2428 71 3 0 chr11 34555051 34555345 -114228127 + AluY SINE Alu 1 295 -16 189 0 0 0 chr11 34555345 34555366 -114228106 + (GA)n Simple_repeat Simple_repeat 2 22 0 2121 95 0 0 chr11 34555611 34555884 -114227588 + AluSq SINE Alu 39 311 -2 207 294 131 65 chr11 34556218 34556432 -114227040 - L2 LINE L2 -40 3232 3005 180 77 0 0 chr11 34556551 34556577 -114226895 + (TG)n Simple_repeat Simple_repeat 2 27 0 832 147 51 70 chr11 34556708 34556864 -114226608 - AluJo SINE Alu -159 153 1 2296 91 3 19 chr11 34556869 34557178 -114226294 - AluSq SINE Alu -9 304 1 2362 85 0 0 chr11 34557192 34557485 -114225987 - AluSc SINE Alu -16 293 1 2602 168 16 9 chr11 34557895 34558318 -114225154 - MSTB LTR MaLR 0 426 1 1676 245 29 8 chr11 34558554 34558938 -114224534 + LTR40b LTR ERVL 5 396 -66 2169 101 7 0 chr11 34558948 34559244 -114224228 + AluSx SINE Alu 1 298 -14 376 220 97 112 chr11 34559995 34560263 -114223209 - MLT1J LTR MaLR -50 461 198 2052 134 7 0 chr11 34560275 34560580 -114222892 + AluSq SINE Alu 1 307 -6 340 163 1 51 chr11 34560580 34560682 -114222790 - L1P3 LINE L1 -673 5481 5388 311 245 57 38 chr11 34560695 34560801 -114222671 + L1ME3A LINE L1 6058 6165 -5 189 74 0 0 chr11 34560991 34561018 -114222454 + (CA)n Simple_repeat Simple_repeat 1 27 0 2082 118 17 0 chr11 34561038 34561327 -114222145 + AluSx SINE Alu 1 294 -18 784 259 106 90 chr11 34562007 34562508 -114220964 - MLT1J LTR MaLR 0 511 3 24 53 0 0 chr11 34562567 34562605 -114220867 + AT_rich Low_complexity Low_complexity 1 38 0 248 266 156 37 chr11 34562660 34562769 -114220703 - L2 LINE L2 0 3272 3151 2040 95 53 14 chr11 34562878 34563163 -114220309 - AluSq SINE Alu -17 296 1 1842 105 127 0 chr11 34563546 34563813 -114219659 - AluSx SINE Alu -6 306 6 2115 177 101 40 chr11 34563816 34564319 -114219153 - LTR64 LTR ERVK -24 534 1 445 117 117 0 chr11 34564330 34564407 -114219065 + LTR1 LTR ERV1 83 168 -617 279 0 0 0 chr11 34564407 34564438 -114219034 + (TG)n Simple_repeat Simple_repeat 2 32 0 409 151 14 14 chr11 34564476 34564549 -114218923 + LTR1 LTR ERV1 91 163 -622 378 0 0 0 chr11 34564552 34564594 -114218878 + (TG)n Simple_repeat Simple_repeat 2 43 0 296 262 39 19 chr11 34564821 34564924 -114218548 - L2 LINE L2 0 3272 3168 818 223 34 48 chr11 34565048 34565317 -114218155 - L1ME1 LINE L1 -2 6164 5900 244 143 0 82 chr11 34565383 34565432 -114218040 - Alu SINE Alu -9 292 248 711 191 6 37 chr11 34565449 34565611 -114217861 - L1ME1 LINE L1 -311 5855 5699 2628 154 60 23 chr11 34565628 34566141 -114217331 + L1MB7 LINE L1 5588 6119 -65 2171 99 0 7 chr11 34566144 34566438 -114217034 - AluSx SINE Alu -20 292 1 764 227 121 0 chr11 34566455 34566653 -114216819 - L1ME1 LINE L1 -458 5708 5487 2392 66 0 3 chr11 34567443 34567746 -114215726 + AluY SINE Alu 1 302 -9 2048 118 3 44 chr11 34569065 34569380 -114214092 + AluSq SINE Alu 1 302 -11 933 136 102 0 chr11 34570432 34570608 -114212864 - L1MA4 LINE L1 -14 6286 6093 2448 88 0 0 chr11 34571226 34571533 -114211939 + AluSg SINE Alu 1 307 -3 583 247 114 0 chr11 34571911 34572069 -114211403 + MIR SINE MIR 12 187 -75 2318 78 3 3 chr11 34572298 34572594 -114210878 - AluSp SINE Alu -17 296 1 1408 166 85 7 chr11 34573241 34573512 -114209960 + MER58B DNA MER1_type 49 340 -1 2324 84 3 0 chr11 34573970 34574266 -114209206 - AluY SINE Alu -14 297 1 21 0 0 0 chr11 34574503 34574524 -114208948 + AT_rich Low_complexity Low_complexity 1 21 0 220 367 6 17 chr11 34575085 34575265 -114208207 + (CCA)n Simple_repeat Simple_repeat 1 178 0 837 183 79 49 chr11 34575909 34576073 -114207399 - FAM SINE Alu -5 170 2 588 249 130 108 chr11 34576503 34576940 -114206532 + L2 LINE L2 2867 3313 0 293 227 43 85 chr11 34577621 34577762 -114205710 + MIR SINE MIR 100 234 -28 1905 124 16 42 chr11 34578346 34578652 -114204820 - AluSx SINE Alu -14 298 1 2182 97 3 31 chr11 34579428 34579747 -114203725 + AluY SINE Alu 1 310 -1 1934 155 3 0 chr11 34579760 34580050 -114203422 + AluSx SINE Alu 20 310 -2 25 51 0 0 chr11 34582142 34582181 -114201291 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr11 34582612 34582635 -114200837 + AT_rich Low_complexity Low_complexity 1 23 0 286 328 107 15 chr11 34582918 34583049 -114200423 + MIR3 SINE MIR 47 189 -19 226 313 45 0 chr11 34584176 34584243 -114199229 + MIR SINE MIR 2 71 -191 403 167 83 12 chr11 34584273 34584357 -114199115 + MIR SINE MIR 171 260 -2 201 94 0 0 chr11 34584619 34584651 -114198821 + (A)n Simple_repeat Simple_repeat 1 32 0 349 214 150 14 chr11 34586519 34586659 -114196813 - L1ME4a LINE L1 -1 6120 5962 261 217 250 0 chr11 34586706 34586826 -114196646 - L1ME4a LINE L1 -260 5861 5712 1679 197 27 0 chr11 34586910 34587210 -114196262 + AluJb SINE Alu 1 308 -4 1584 154 60 15 chr11 34587250 34587516 -114195956 - AluJb SINE Alu -22 290 13 2263 97 0 3 chr11 34587969 34588269 -114195203 - AluSg SINE Alu -11 299 1 180 0 0 0 chr11 34588278 34588298 -114195174 + (T)n Simple_repeat Simple_repeat 1 20 0 269 245 0 0 chr11 34588499 34588552 -114194920 + MIR SINE MIR 81 133 -75 649 231 58 0 chr11 34589405 34589584 -114193888 - MER58A DNA MER1_type 0 224 35 243 270 0 48 chr11 34589632 34589695 -114193777 + L2 LINE L2 3213 3272 0 196 259 224 35 chr11 34589759 34589875 -114193597 + MIR SINE MIR 3 140 -122 1650 99 144 4 chr11 34589926 34590189 -114193283 - AluSg SINE Alu 0 300 1 2910 0 0 0 chr11 34590198 34590509 -114192963 - AluYa5 SINE Alu 0 311 1 202 327 190 15 chr11 34590536 34590741 -114192731 + L3b LINE CR1 1339 1579 -4 1988 102 57 78 chr11 34590883 34591255 -114192217 - THE1B LTR MaLR 0 364 1 11108 86 47 6 chr11 34591255 34592773 -114190699 - THE1B-int LTR MaLR 0 1580 1 2329 126 22 22 chr11 34592773 34592899 -114190573 - THE1B LTR MaLR 0 364 239 2362 75 0 33 chr11 34592899 34593206 -114190266 - AluY SINE Alu -14 297 1 2329 126 22 22 chr11 34593206 34593443 -114190029 - THE1B LTR MaLR -124 240 1 1618 178 50 3 chr11 34595586 34595884 -114187588 + AluJb SINE Alu 1 312 0 289 266 0 0 chr11 34598707 34598771 -114184701 - L3 LINE CR1 -69 1508 1445 231 397 95 4 chr11 34598795 34599027 -114184445 - L2 LINE L2 -1313 2001 1749 1045 165 0 6 chr11 34599591 34599761 -114183711 - FAM SINE Alu -5 170 2 574 365 80 25 chr11 34599823 34600421 -114183051 - L2 LINE L2 -18 3295 2665 504 215 120 19 chr11 34600470 34600628 -114182844 + MER112 DNA MER1_type 82 255 -5 459 362 36 7 chr11 34600685 34600964 -114182508 - L2 LINE L2 -731 2583 2297 5806 119 33 13 chr11 34601002 34601664 -114181808 - L1PA16 LINE L1 -9 6157 5458 2045 151 3 0 chr11 34601664 34601969 -114181503 - AluSx SINE Alu -6 306 1 5806 119 33 13 chr11 34601969 34602409 -114181063 - L1PA16 LINE L1 -708 5458 5028 1704 183 0 7 chr11 34602508 34602787 -114180685 + AluJo SINE Alu 3 279 -33 713 194 6 0 chr11 34602833 34603008 -114180464 + GA-rich Low_complexity Low_complexity 1 176 0 1006 243 100 82 chr11 34603156 34603531 -114179941 - MLT1F1 LTR MaLR -37 530 143 1727 72 0 9 chr11 34603531 34603754 -114179718 + AluY SINE Alu 87 307 -4 1006 243 100 82 chr11 34603754 34603900 -114179572 - MLT1F1 LTR MaLR -424 143 1 7036 110 13 6 chr11 34603953 34605804 -114177668 + L1PA8 LINE L1 4301 6172 0 2003 132 7 0 chr11 34606099 34606422 -114177050 - AluSg SINE Alu 0 325 1 1399 216 20 10 chr11 34606470 34606771 -114176701 - AluJb SINE Alu -8 304 1 764 239 31 89 chr11 34606968 34607172 -114176300 + L1ME LINE L1 5414 5595 -526 1792 122 32 32 chr11 34607172 34607487 -114175985 + AluSc SINE Alu 1 315 0 764 239 31 89 chr11 34607487 34607589 -114175883 + L1ME LINE L1 5595 5701 -420 293 138 0 52 chr11 34607679 34607737 -114175735 + L1M4 LINE L1 5563 5617 -557 * 2934 63 0 18 chr11 34607735 34608118 -114175354 + L1PA6 LINE L1 5586 5961 -193 5092 42 0 2 chr11 34608120 34608749 -114174723 - L1P LINE L1 -3719 2427 1798 13096 34 0 0 chr11 34608749 34611101 -114172371 + L1PA4 LINE L1 3792 6155 0 3335 279 85 39 chr11 34611186 34612536 -114170936 + L1MEc LINE L1 44 1508 -4888 1979 83 65 0 chr11 34612536 34612812 -114170660 - AluSg SINE Alu -16 294 1 3335 279 85 39 chr11 34612812 34613372 -114170100 + L1MEc LINE L1 1508 2041 -4355 342 189 0 189 chr11 34613381 34613432 -114170040 + MER58A DNA MER1_type 2 61 -280 217 0 61 0 chr11 34613432 34613465 -114170007 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 342 189 0 189 chr11 34613465 34613480 -114169992 + MER58A DNA MER1_type 61 43 -298 2026 121 7 0 chr11 34613480 34613760 -114169712 - AluSx SINE Alu -30 282 1 342 189 0 189 chr11 34613760 34613803 -114169669 + MER58A DNA MER1_type 42 91 -133 421 145 60 0 chr11 34613805 34613888 -114169584 + L1MB4 LINE L1 6093 6180 0 2410 206 22 50 chr11 34613982 34614662 -114168810 + L1MEc LINE L1 2341 3001 -3214 230 71 0 0 chr11 34614662 34614690 -114168782 + Alu SINE Alu 87 114 -188 599 66 74 0 chr11 34614690 34614811 -114168661 + GA-rich Low_complexity Low_complexity 5 134 0 725 152 101 29 chr11 34614820 34614958 -114168514 + AluJb SINE Alu 135 282 -30 210 171 0 0 chr11 34614967 34615008 -114168464 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 1633 198 36 68 chr11 34615047 34615336 -114168136 - L1M4 LINE L1 -3213 2933 2636 1958 150 0 0 chr11 34615336 34615643 -114167829 - AluSx SINE Alu -5 307 1 1633 198 36 68 chr11 34615643 34615720 -114167752 - L1M4 LINE L1 -3510 2636 2558 204 40 0 0 chr11 34615720 34615745 -114167727 + (TG)n Simple_repeat Simple_repeat 2 26 0 1633 198 36 68 chr11 34615745 34615846 -114167626 - L1M4 LINE L1 -3588 2558 2480 894 217 38 4 chr11 34615900 34616163 -114167309 + L1MEc LINE L1 2997 3268 -2947 992 97 0 0 chr11 34616167 34616301 -114167171 - AluSc SINE Alu -7 302 169 697 226 41 41 chr11 34616317 34616560 -114166912 + L1MEc LINE L1 3263 3505 -2710 2950 179 37 13 chr11 34616564 34617106 -114166366 - MER68 LTR ERV1 -7 555 1 2673 233 92 36 chr11 34617113 34617958 -114165514 + L1MEc LINE L1 3506 4302 -1913 653 236 0 0 chr11 34617958 34618081 -114165391 + FLAM_A SINE Alu 1 123 -10 2673 233 92 36 chr11 34618081 34618763 -114164709 + L1MEc LINE L1 4302 5139 -1076 543 265 77 6 chr11 34619132 34619302 -114164170 - MIR SINE MIR -78 184 3 38 68 0 0 chr11 34619314 34619387 -114164085 + AT_rich Low_complexity Low_complexity 1 73 0 202 220 0 0 chr11 34619765 34619815 -114163657 + (TTA)n Simple_repeat Simple_repeat 2 51 0 933 316 103 66 chr11 34619919 34620125 -114163347 + L2 LINE L2 1528 1725 -1589 2259 92 23 0 chr11 34620125 34620428 -114163044 - AluSg SINE Alu 0 310 1 933 316 103 66 chr11 34620428 34620717 -114162755 + L2 LINE L2 1725 2002 -1312 228 67 0 0 chr11 34620717 34620747 -114162725 + (CA)n Simple_repeat Simple_repeat 2 31 0 933 316 103 66 chr11 34620747 34621447 -114162025 + L2 LINE L2 2002 2768 -546 2276 105 7 0 chr11 34621589 34621894 -114161578 - AluSc SINE Alu -2 307 1 2081 103 4 4 chr11 34621983 34622264 -114161208 + AluSx SINE Alu 1 281 -31 318 325 65 8 chr11 34622439 34622562 -114160910 + L2 LINE L2 3179 3308 -5 2357 95 3 0 chr11 34622562 34622866 -114160606 - AluSx SINE Alu -7 305 1 2115 86 7 4 chr11 34623853 34624133 -114159339 + AluY SINE Alu 1 281 -30 240 35 0 0 chr11 34624138 34624167 -114159305 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 31 0 0 0 chr11 34624518 34624549 -114158923 + AT_rich Low_complexity Low_complexity 1 31 0 264 167 0 0 chr11 34624813 34624861 -114158611 + (TA)n Simple_repeat Simple_repeat 1 48 0 29 28 0 0 chr11 34625048 34625084 -114158388 + AT_rich Low_complexity Low_complexity 1 36 0 302 245 49 35 chr11 34626020 34626163 -114157309 - L1ME4a LINE L1 -96 6025 5881 3654 107 77 37 chr11 34626485 34627159 -114156313 - Tigger3b DNA MER2_type 0 1232 532 3106 82 48 0 chr11 34627159 34627597 -114155875 + L1PA15 LINE L1 5699 6157 -8 1123 121 12 0 chr11 34627600 34627773 -114155699 - L1MB4 LINE L1 -17 6163 5989 1465 231 55 28 chr11 34627782 34628180 -114155292 - L1ME1 LINE L1 -67 6099 5691 3124 139 35 26 chr11 34628185 34628397 -114155075 - Tigger3b DNA MER2_type -2483 545 336 2383 97 3 0 chr11 34628397 34628706 -114154766 - AluSg SINE Alu 0 310 1 3124 139 35 26 chr11 34628706 34629032 -114154440 - Tigger3b DNA MER2_type -2692 336 2 1397 244 109 35 chr11 34629296 34629817 -114153655 - HAL1 LINE L1 -566 1941 1382 1573 246 182 18 chr11 34629824 34630205 -114153267 - HAL1 LINE L1 -1178 1329 1012 2319 152 62 0 chr11 34630205 34630606 -114152866 - MSTB LTR MaLR 0 426 1 1573 246 182 18 chr11 34630606 34630895 -114152577 - HAL1 LINE L1 -1495 1012 549 392 264 73 45 chr11 34630934 34631112 -114152360 + MER63A DNA MER1_type 27 209 -1 411 254 139 29 chr11 34631150 34631323 -114152149 - HAL1 LINE L1 -2044 463 272 279 204 91 0 chr11 34631358 34631446 -114152026 - HAL1 LINE L1 -2312 195 100 308 280 112 0 chr11 34631565 34631672 -114151800 - L2 LINE L2 -1 3312 3194 2242 105 3 0 chr11 34631672 34631968 -114151504 - AluSq SINE Alu -16 297 1 260 154 0 0 chr11 34631991 34632030 -114151442 + U2 snRNA snRNA 1 39 -149 332 293 120 30 chr11 34633375 34633542 -114149930 + MIR3 SINE MIR 19 200 -8 2783 258 83 74 chr11 34633958 34634893 -114148579 - MER45C DNA AcHobo -9 944 1 1289 119 0 0 chr11 34635273 34635478 -114147994 + AluSg/x SINE Alu 133 337 0 234 91 0 0 chr11 34636201 34636234 -114147238 + (CAGA)n Simple_repeat Simple_repeat 4 36 0 248 191 0 0 chr11 34636977 34637019 -114146453 - L2 LINE L2 -7 3265 3224 188 333 0 0 chr11 34636987 34637053 -114146419 - MIR SINE MIR -11 251 186 * 2020 127 3 3 chr11 34637273 34637591 -114145881 - AluSx SINE Alu 0 318 1 440 323 42 61 chr11 34638546 34638936 -114144536 - L2 LINE L2 -238 3034 2660 2370 49 0 7 chr11 34639182 34639496 -114143976 - AluY SINE Alu 0 312 1 297 278 202 71 chr11 34639572 34639924 -114143548 + LTR67 LTR ERVL 154 551 -6 261 344 123 0 chr11 34640093 34640256 -114143216 - L2 LINE L2 -1096 2218 2036 872 282 52 8 chr11 34640613 34640861 -114142611 + LTR33 LTR ERVL 6 264 -257 1228 206 5 0 chr11 34640861 34641079 -114142393 + AluJo SINE Alu 26 244 -68 210 71 0 0 chr11 34641141 34641169 -114142303 + (A)n Simple_repeat Simple_repeat 1 28 0 808 250 22 52 chr11 34641171 34641443 -114142029 + LTR33 LTR ERVL 258 521 0 187 296 139 61 chr11 34641799 34642029 -114141443 - L2 LINE L2 -672 2642 2395 266 265 105 50 chr11 34642769 34642950 -114140522 - MLT1L LTR MaLR -1 614 424 382 260 4 3 chr11 34643044 34643140 -114140332 - MLT1L LTR MaLR -329 259 149 234 0 0 0 chr11 34643347 34643373 -114140099 + (A)n Simple_repeat Simple_repeat 1 26 0 29 28 0 0 chr11 34643578 34643614 -114139858 + AT_rich Low_complexity Low_complexity 1 36 0 1762 158 10 17 chr11 34643660 34643951 -114139521 + AluJo SINE Alu 1 289 -23 2931 81 15 0 chr11 34644423 34644829 -114138643 - L1PA5 LINE L1 -5 6149 5738 41348 60 6 2 chr11 34644830 34650928 -114132544 - L1PA5 LINE L1 -29 6125 1 556 259 24 35 chr11 34651026 34651186 -114132286 + MIR SINE MIR 4 176 -32 213 196 65 0 chr11 34651197 34651243 -114132229 - L2 LINE L2 -4 3309 3261 4552 92 24 8 chr11 34652443 34653110 -114130362 - L1MA2 LINE L1 0 6304 5627 2449 74 0 0 chr11 34653358 34653656 -114129816 + AluY SINE Alu 1 298 -13 186 43 0 0 chr11 34654516 34654539 -114128933 + (A)n Simple_repeat Simple_repeat 1 23 0 2008 126 31 0 chr11 34655186 34655472 -114128000 + AluSx SINE Alu 1 295 -17 1509 127 24 0 chr11 34656149 34656402 -114127070 + L1MC1 LINE L1 5254 5512 -832 699 135 36 0 chr11 34656402 34656499 -114126973 + L1MC1 LINE L1 6201 6315 -18 36 0 0 0 chr11 34656502 34656538 -114126934 + AT_rich Low_complexity Low_complexity 1 36 0 1167 257 136 15 chr11 34656824 34657280 -114126192 - LTR33 LTR ERVL 0 521 11 575 305 27 42 chr11 34657541 34657803 -114125669 - MLT1L LTR MaLR 0 615 358 754 336 129 19 chr11 34658030 34658402 -114125070 + L2 LINE L2 2857 3269 -3 21 0 0 0 chr11 34658631 34658652 -114124820 + AT_rich Low_complexity Low_complexity 1 21 0 1430 180 8 4 chr11 34659668 34659918 -114123554 + AluJo SINE Alu 49 299 -13 185 235 20 20 chr11 34660246 34660297 -114123175 + L2 LINE L2 3217 3267 -5 2287 104 0 13 chr11 34660789 34661097 -114122375 + AluSg SINE Alu 1 304 -6 2185 125 3 0 chr11 34661114 34661419 -114122053 + AluSq SINE Alu 1 306 -7 461 273 186 5 chr11 34661432 34661652 -114121820 + MIR SINE MIR 3 262 0 2267 98 3 3 chr11 34661720 34662016 -114121456 + AluSg SINE Alu 1 296 -14 183 42 0 0 chr11 34662027 34662051 -114121421 + (CA)n Simple_repeat Simple_repeat 2 25 0 2177 114 3 3 chr11 34662474 34662781 -114120691 - AluSx SINE Alu -5 307 1 24 0 0 0 chr11 34665037 34665061 -114118411 + AT_rich Low_complexity Low_complexity 1 24 0 1433 158 4 0 chr11 34666204 34666438 -114117034 - MER46A DNA MER2_type -1 235 1 831 247 40 13 chr11 34666805 34667032 -114116440 - L2 LINE L2 0 3313 3081 207 0 0 0 chr11 34667160 34667183 -114116289 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1577 176 0 18 chr11 34667194 34667466 -114116006 - AluJo SINE Alu -41 271 5 352 279 106 11 chr11 34667552 34667817 -114115655 - L1ME4a LINE L1 -240 5881 5592 1434 182 26 11 chr11 34667835 34668104 -114115368 + AluJb SINE Alu 18 290 -22 240 167 50 0 chr11 34668115 34668175 -114115297 - L1ME4a LINE L1 -675 5567 5505 189 0 0 0 chr11 34668267 34668288 -114115184 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 1549 288 164 36 chr11 34668306 34668836 -114114636 - L2 LINE L2 0 3313 2852 2531 70 0 0 chr11 34668836 34669137 -114114335 - AluSc SINE Alu -8 301 1 1549 288 164 36 chr11 34669137 34669589 -114113883 - L2 LINE L2 -461 2852 2183 30 0 0 0 chr11 34669963 34669993 -114113479 + AT_rich Low_complexity Low_complexity 1 30 0 2509 233 49 10 chr11 34670582 34671808 -114111664 + L1MC4 LINE L1 6468 7898 -144 262 324 0 19 chr11 34671951 34672056 -114111416 + L1MEd LINE L1 103 205 -5914 830 267 64 63 chr11 34672330 34672846 -114110626 + L1MEd LINE L1 511 1030 -5089 2255 79 0 0 chr11 34672846 34673126 -114110346 + AluY SINE Alu 16 295 -16 830 267 64 63 chr11 34673126 34673295 -114110177 + L1MEd LINE L1 1030 1197 -4922 2329 118 36 36 chr11 34673419 34673552 -114109920 - L1MC1 LINE L1 0 6333 6201 2202 109 104 15 chr11 34673552 34673945 -114109527 + MSTA LTR MaLR 1 428 0 2329 118 36 36 chr11 34673945 34674165 -114109307 - L1MC1 LINE L1 -132 6201 5977 2106 117 3 3 chr11 34674165 34674463 -114109009 - AluSq SINE Alu -15 298 1 2329 118 36 36 chr11 34674463 34674525 -114108947 - L1MC1 LINE L1 -355 5978 5917 1903 157 45 22 chr11 34674525 34674884 -114108588 - L1MC1 LINE L1 -743 5403 5074 2575 62 0 0 chr11 34674884 34675189 -114108283 + AluY SINE Alu 1 305 -6 1903 157 45 22 chr11 34675189 34675369 -114108103 - L1MC1 LINE L1 -1072 5074 4900 29 70 0 0 chr11 34675612 34675669 -114107803 + AT_rich Low_complexity Low_complexity 1 57 0 182 220 60 40 chr11 34675669 34675719 -114107753 - MIR3 SINE MIR -13 195 145 224 404 21 11 chr11 34675876 34675970 -114107502 - MIR3 SINE MIR -52 156 62 194 243 114 43 chr11 34676236 34676306 -114107166 + L2 LINE L2 3150 3224 -48 7320 43 1 1 chr11 34676657 34677567 -114105905 + L1P LINE L1 3614 4523 -1623 1063 96 0 0 chr11 34677574 34677720 -114105752 + L1PA6 LINE L1 6004 6149 -5 2270 105 0 0 chr11 34678206 34678501 -114104971 + AluSx SINE Alu 3 297 -15 27 0 0 0 chr11 34679066 34679093 -114104379 + AT_rich Low_complexity Low_complexity 1 27 0 1810 138 31 31 chr11 34679557 34679847 -114103625 - AluJb SINE Alu -22 290 1 1444 178 0 20 chr11 34680002 34680255 -114103217 - AluJo SINE Alu -64 248 1 1128 230 65 100 chr11 34680263 34680595 -114102877 - L1MC4 LINE L1 -88 7954 7612 1853 132 4 0 chr11 34680595 34680860 -114102612 - AluSx SINE Alu -3 309 44 1128 230 65 100 chr11 34680860 34680915 -114102557 - L1MC4 LINE L1 -430 7612 7557 1337 118 0 5 chr11 34680915 34681119 -114102353 - L1PA15 LINE L1 0 6165 5963 1128 230 65 100 chr11 34681119 34681136 -114102336 - L1MC4 LINE L1 -485 7557 7541 2714 42 0 0 chr11 34681136 34681447 -114102025 - AluY SINE Alu 0 311 1 1128 230 65 100 chr11 34681447 34681719 -114101753 - L1MC4 LINE L1 -501 7541 7300 595 204 61 8 chr11 34681784 34681916 -114101556 + L2 LINE L2 3171 3309 -4 260 399 53 15 chr11 34681911 34682044 -114101428 + L2 LINE L2 3112 3249 -23 * 36 62 0 0 chr11 34682135 34682199 -114101273 + AT_rich Low_complexity Low_complexity 1 64 0 3189 38 13 2 chr11 34682603 34682999 -114100473 + L1PA5 LINE L1 5738 6137 -17 29 0 0 0 chr11 34682999 34683028 -114100444 + AT_rich Low_complexity Low_complexity 1 29 0 550 295 24 24 chr11 34683587 34683753 -114099719 + MIR3 SINE MIR 15 180 -28 24 0 0 0 chr11 34683887 34683911 -114099561 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr11 34683957 34683978 -114099494 + AT_rich Low_complexity Low_complexity 1 21 0 673 203 8 0 chr11 34684147 34684275 -114099197 - FLAM_A SINE Alu -3 130 2 1388 157 97 41 chr11 34684540 34684807 -114098665 + AluJo SINE Alu 1 302 0 181 0 0 0 chr11 34684807 34684827 -114098645 + (TAAA)n Simple_repeat Simple_repeat 1 60 0 260 351 94 10 chr11 34685730 34685932 -114097540 - L3b LINE CR1 -87 1496 1278 1983 146 3 3 chr11 34686220 34686508 -114096964 - AluJb SINE Alu -24 288 1 198 118 0 0 chr11 34686723 34686757 -114096715 + (CAA)n Simple_repeat Simple_repeat 1 34 0 650 246 147 22 chr11 34687019 34687116 -114096356 - HAL1 LINE L1 -115 2392 2308 4586 193 113 100 chr11 34687116 34688849 -114094623 + MER52A LTR ERV1 1 1755 0 650 246 147 22 chr11 34688849 34689064 -114094408 - HAL1 LINE L1 -199 2308 2041 335 309 41 36 chr11 34689803 34689997 -114093475 + MER110-int LTR ERV1 2117 2311 -4490 475 266 35 89 chr11 34690367 34690626 -114092846 + MER110-int LTR ERV1 203 447 -4200 10901 206 18 11 chr11 34691066 34692417 -114091055 - L1 LINE L1 -1038 5108 3729 1943 156 10 0 chr11 34692417 34692718 -114090754 - AluSx SINE Alu -8 304 1 10901 206 18 11 chr11 34692718 34693945 -114089527 - L1 LINE L1 -2417 3729 2512 754 208 11 0 chr11 34693943 34694121 -114089351 + L1PB1 LINE L1 5090 5269 -877 * 5135 92 39 0 chr11 34694123 34694893 -114088579 + L1PB1 LINE L1 5352 6151 0 655 333 40 19 chr11 34694901 34695276 -114088196 + MER110-int LTR ERV1 3078 3460 -3341 1978 107 52 60 chr11 34695285 34695687 -114087785 + L1MA7 LINE L1 5892 6290 -1 428 314 21 37 chr11 34696210 34696401 -114087071 + MER110-int LTR ERV1 3531 3718 -3083 1438 286 79 39 chr11 34696659 34697319 -114086153 + MER110-int LTR ERV1 1718 2403 -2244 1272 202 32 9 chr11 34697881 34698178 -114085294 + MER58B DNA MER1_type 37 340 -1 327 223 20 99 chr11 34698180 34698382 -114085090 + MER110-int LTR ERV1 3026 3211 -1436 718 278 19 10 chr11 34698402 34698607 -114084865 + MER110-int LTR ERV1 4362 4568 -79 249 33 0 0 chr11 34698615 34698645 -114084827 + (CA)n Simple_repeat Simple_repeat 2 31 0 699 213 79 135 chr11 34698835 34699282 -114084190 + MER110 LTR ERV1 80 483 -8 311 288 104 7 chr11 34699361 34699649 -114083823 - L1M4 LINE L1 -1198 4948 4633 2007 134 3 3 chr11 34699686 34699978 -114083494 - AluJo SINE Alu -12 300 9 2185 122 38 24 chr11 34700824 34701194 -114082278 - THE1C LTR MaLR 0 375 1 478 272 156 22 chr11 34701318 34701689 -114081783 + L1MCc LINE L1 -293 127 -5999 351 289 44 29 chr11 34702016 34702247 -114081225 + L1MCc LINE L1 652 865 -5260 1669 208 60 25 chr11 34702379 34702864 -114080608 + L1MCc LINE L1 734 1235 -5307 3247 236 50 11 chr11 34702866 34703898 -114079574 + L1M4 LINE L1 3328 4400 -1746 691 213 14 16 chr11 34703895 34704104 -114079368 + L1ME2 LINE L1 5965 6165 -1 * 2199 124 0 20 chr11 34704142 34704448 -114079024 - AluSx SINE Alu -12 300 1 2459 67 0 13 chr11 34704720 34705020 -114078452 - AluY SINE Alu -15 296 1 963 251 111 43 chr11 34705113 34705528 -114077944 - MLT1L LTR MaLR 0 615 173 899 301 21 0 chr11 34705896 34706132 -114077340 - MIR SINE MIR -19 243 3 26 0 0 0 chr11 34706955 34706981 -114076491 + AT_rich Low_complexity Low_complexity 1 26 0 21 71 0 0 chr11 34707042 34707084 -114076388 + AT_rich Low_complexity Low_complexity 1 42 0 444 348 41 12 chr11 34707677 34707921 -114075551 + MER102b DNA MER1_type 70 320 -21 1733 162 33 24 chr11 34708262 34708596 -114074876 + MER44D DNA MER2_type 2 608 -1 208 206 0 103 chr11 34708799 34708867 -114074605 + MIR3 SINE MIR 148 208 0 849 250 67 43 chr11 34709329 34710086 -114073386 + L1M3de LINE L1 780 3004 -3125 * 2895 190 183 129 chr11 34710084 34710454 -114073018 - L1MD3 LINE L1 -231 7764 7415 289 227 62 94 chr11 34710454 34710582 -114072890 - MLT1L LTR MaLR -443 124 1 2895 190 183 129 chr11 34710582 34710696 -114072776 - L1MD3 LINE L1 -580 7415 7309 2231 98 0 0 chr11 34710696 34710993 -114072479 - AluSg1 SINE Alu -12 297 1 2895 190 183 129 chr11 34710993 34711093 -114072379 - L1MD3 LINE L1 -686 7309 7216 1802 181 3 0 chr11 34711093 34711381 -114072091 + AluJo SINE Alu 1 289 -23 2895 190 183 129 chr11 34711381 34711814 -114071658 - L1MD3 LINE L1 -779 7216 6808 2213 103 0 0 chr11 34711814 34712128 -114071344 - AluSx SINE Alu 0 314 1 5084 93 19 8 chr11 34712135 34712863 -114070609 - L1PA11 LINE L1 0 6174 5439 2895 190 183 129 chr11 34712863 34713522 -114069950 - L1MD3 LINE L1 -1192 6803 5852 393 283 85 42 chr11 34713525 34713834 -114069638 - L1MEc LINE L1 -4729 1804 1368 38890 66 5 5 chr11 34713911 34717547 -114065925 + L1PA5 LINE L1 1 3636 -2518 2102 22 0 0 chr11 34717547 34717776 -114065696 - SVA Other Other -2 1384 1156 38890 66 5 5 chr11 34717776 34720061 -114063411 + L1PA5 LINE L1 3636 5920 -234 447 106 0 0 chr11 34720061 34720127 -114063345 + (TA)n Simple_repeat Simple_repeat 2 67 0 282 228 29 25 chr11 34720135 34720247 -114063225 - AluSp SINE Alu -111 192 96 14969 151 22 16 chr11 34720323 34720353 -114063119 - L1MA3 LINE L1 0 7724 7696 387 0 0 0 chr11 34720353 34720396 -114063076 + (TG)n Simple_repeat Simple_repeat 2 44 0 14969 151 22 16 chr11 34720396 34720455 -114063017 - L1MA3 LINE L1 -28 7696 7639 2044 126 10 17 chr11 34720455 34720756 -114062716 + AluSx SINE Alu 1 299 -13 14969 151 22 16 chr11 34720756 34724776 -114058696 - L1MA3 LINE L1 -85 7639 3594 6696 73 2 0 chr11 34724791 34726416 -114057056 - L1PA7 LINE L1 -11 6143 4514 1448 73 24 69 chr11 34726416 34726663 -114056809 + L1P LINE L1 2763 2998 -3148 28162 105 16 22 chr11 34726670 34731200 -114052272 - L1PA7 LINE L1 -1635 4511 11 20863 118 51 16 chr11 34731207 34732986 -114050486 - L1MA3 LINE L1 -3955 3610 1894 2392 85 0 3 chr11 34732986 34733291 -114050181 - AluSg SINE Alu -6 304 1 20863 118 51 16 chr11 34733291 34734979 -114048493 - L1MA3 LINE L1 -5671 1894 22 240 173 77 0 chr11 34734982 34735034 -114048438 - MLT1H1 LTR MaLR -33 522 467 292 267 34 48 chr11 34735681 34735827 -114047645 - L1ME LINE L1 -622 5499 5356 1572 173 17 50 chr11 34735932 34736233 -114047239 - AluJo SINE Alu -21 291 1 1769 159 9 55 chr11 34736407 34736585 -114046887 - AluJb SINE Alu 0 312 154 2248 117 0 3 chr11 34736585 34736885 -114046587 - AluSx SINE Alu -11 301 3 1769 159 9 55 chr11 34736885 34737033 -114046439 - AluJb SINE Alu -158 154 1 342 209 79 79 chr11 34737214 34737353 -114046119 - L1ME LINE L1 -1436 4710 4572 550 250 85 26 chr11 34737366 34737638 -114045834 + L1MEd LINE L1 914 1201 -4918 448 313 216 3 chr11 34737639 34737930 -114045542 + L1MEd LINE L1 1216 1568 -4561 2395 102 0 0 chr11 34738000 34738305 -114045167 - AluSg SINE Alu -3 307 3 2286 84 0 0 chr11 34738375 34738659 -114044813 + AluSg SINE Alu 1 284 -26 328 240 0 62 chr11 34738664 34738760 -114044712 + L1MC4 LINE L1 6614 6703 -1339 301 260 0 62 chr11 34738756 34738852 -114044620 - L1MC4 LINE L1 -1339 6703 6614 * 302 273 23 23 chr11 34738858 34738946 -114044526 - L1MC4 LINE L1 -1341 6701 6614 334 272 0 22 chr11 34738966 34739058 -114044414 - L1MC4 LINE L1 -1339 6703 6614 332 255 0 43 chr11 34739094 34739188 -114044284 - L1MC4 LINE L1 -1339 6703 6614 332 255 0 43 chr11 34739198 34739292 -114044180 - L1MC4 LINE L1 -1339 6703 6614 332 255 0 43 chr11 34739302 34739396 -114044076 - L1MC4 LINE L1 -1339 6703 6614 332 255 0 43 chr11 34739406 34739500 -114043972 - L1MC4 LINE L1 -1339 6703 6614 345 261 0 22 chr11 34739508 34739600 -114043872 - L1MC4 LINE L1 -1339 6703 6614 980 244 21 42 chr11 34740073 34740405 -114043067 + L1ME2 LINE L1 5665 5989 -175 24 67 0 0 chr11 34740434 34740479 -114042993 + AT_rich Low_complexity Low_complexity 1 45 0 2299 162 71 53 chr11 34740603 34741096 -114042376 - MLT1D LTR MaLR -3 502 1 21 36 0 0 chr11 34742125 34742153 -114041319 + AT_rich Low_complexity Low_complexity 1 28 0 1908 121 0 4 chr11 34742441 34742705 -114040767 - AluSx SINE Alu -1 311 49 3439 230 46 22 chr11 34743890 34744767 -114038705 - L1MD2 LINE L1 -10 6349 5452 2410 150 0 0 chr11 34744898 34745259 -114038213 - MLT2D LTR ERVL -46 368 8 22978 80 7 6 chr11 34745750 34748868 -114034604 + L1PA5 LINE L1 2 3121 -3025 15996 38 0 0 chr11 34748877 34751606 -114031866 + L1PA5 LINE L1 3438 6154 0 22 35 0 0 chr11 34751666 34751695 -114031777 + AT_rich Low_complexity Low_complexity 1 29 0 280 353 10 0 chr11 34751715 34751817 -114031655 + L1MEd LINE L1 534 636 -5483 995 197 0 0 chr11 34751817 34751995 -114031477 + FRAM SINE Alu 1 175 -1 812 262 58 4 chr11 34751998 34752273 -114031199 + L1ME LINE L1 5298 5587 -575 1697 248 68 37 chr11 34752300 34752813 -114030659 - MLT1H LTR MaLR -18 531 3 198 376 60 7 chr11 34752815 34752964 -114030508 + L2 LINE L2 2923 3079 -193 910 242 118 48 chr11 34753110 34753582 -114029890 - MLT1H LTR MaLR -8 547 21 242 361 21 7 chr11 34753794 34753938 -114029534 + MLT1-int LTR MaLR 399 544 -827 289 270 27 0 chr11 34754257 34754331 -114029141 + MLT1-int LTR MaLR 804 879 -492 347 235 25 0 chr11 34755216 34755297 -114028175 + MLT1H1 LTR MaLR 463 545 -10 333 221 126 16 chr11 34755324 34755451 -114028021 - HAL1 LINE L1 -1556 951 811 692 256 101 48 chr11 34755451 34755888 -114027584 + L1MC4 LINE L1 7566 8025 -17 3499 144 60 26 chr11 34755901 34756583 -114026889 + L1MB8 LINE L1 5468 6172 -6 1586 174 28 28 chr11 34756627 34756914 -114026558 + AluJo SINE Alu 9 295 -17 411 293 50 92 chr11 34756914 34757314 -114026158 - HAL1 LINE L1 -1703 804 422 238 288 215 18 chr11 34757434 34757597 -114025875 - HAL1 LINE L1 -2311 196 2 25 0 0 0 chr11 34757774 34757799 -114025673 + AT_rich Low_complexity Low_complexity 1 25 0 194 349 17 114 chr11 34757951 34758126 -114025346 - L2 LINE L2 -108 3164 3007 21 57 0 0 chr11 34758150 34758185 -114025287 + AT_rich Low_complexity Low_complexity 1 35 0 338 247 13 13 chr11 34758289 34758366 -114025106 + L2 LINE L2 3222 3298 -15 812 294 92 46 chr11 34758375 34758766 -114024706 + L2 LINE L2 2905 3313 0 218 329 0 0 chr11 34759148 34759230 -114024242 + CT-rich Low_complexity Low_complexity 1 82 0 183 80 0 0 chr11 34759921 34759946 -114023526 + (TA)n Simple_repeat Simple_repeat 2 26 0 594 103 0 0 chr11 34760058 34760145 -114023327 + (TA)n Simple_repeat Simple_repeat 1 87 0 2227 113 3 22 chr11 34760208 34760526 -114022946 - AluSx SINE Alu 0 312 1 26 64 0 0 chr11 34760781 34760828 -114022644 + AT_rich Low_complexity Low_complexity 1 47 0 779 199 21 7 chr11 34761257 34761398 -114022074 + MER5A DNA MER1_type 2 144 -45 2086 105 46 0 chr11 34761651 34761936 -114021536 + AluSq SINE Alu 1 298 -15 725 300 113 51 chr11 34762458 34762991 -114020481 - MLT1K LTR MaLR -22 566 1 1998 149 0 0 chr11 34763113 34763401 -114020071 + AluSx SINE Alu 1 288 -24 30 27 0 0 chr11 34763401 34763438 -114020034 + AT_rich Low_complexity Low_complexity 1 37 0 496 266 83 41 chr11 34763505 34763795 -114019677 + L1ME LINE L1 5513 5814 -307 854 231 91 12 chr11 34763797 34764039 -114019433 - MIR SINE MIR 0 262 2 1376 174 0 5 chr11 34764042 34764266 -114019206 + AluJb SINE Alu 70 292 -20 4889 254 114 50 chr11 34764348 34764960 -114018512 + HAL1 LINE L1 3 575 -1932 3620 114 6 21 chr11 34764960 34765495 -114017977 + MER1A DNA MER1_type 1 527 0 4889 254 114 50 chr11 34765495 34766556 -114016916 + HAL1 LINE L1 575 1567 -940 1846 114 81 92 chr11 34766556 34766925 -114016547 - MLT1A1 LTR MaLR 0 365 1 4889 254 114 50 chr11 34766925 34767169 -114016303 + HAL1 LINE L1 1567 1794 -713 2218 97 7 3 chr11 34767169 34767467 -114016005 + AluSp SINE Alu 1 299 -14 4889 254 114 50 chr11 34767467 34767819 -114015653 + HAL1 LINE L1 1794 2418 -89 2134 104 31 0 chr11 34768013 34768302 -114015170 + AluSq SINE Alu 1 298 -15 324 211 0 101 chr11 34768356 34768465 -114015007 - MER112 DNA MER1_type -151 109 12 1975 147 6 13 chr11 34768511 34768824 -114014648 - AluJb SINE Alu 0 312 2 377 216 180 36 chr11 34768935 34769074 -114014398 + MIR SINE MIR 49 207 -55 237 120 84 0 chr11 34769474 34769616 -114013856 + (TA)n Simple_repeat Simple_repeat 1 154 0 35 24 0 0 chr11 34769625 34769667 -114013805 + AT_rich Low_complexity Low_complexity 1 42 0 2015 128 31 0 chr11 34771598 34771887 -114011585 - AluJo SINE Alu -14 298 1 518 379 70 28 chr11 34772531 34772610 -114010862 - L2 LINE L2 0 3272 3198 1856 162 0 7 chr11 34772610 34772907 -114010565 + AluJo SINE Alu 1 295 -17 518 379 70 28 chr11 34772907 34773257 -114010215 - L2 LINE L2 -74 3198 2825 26 30 0 0 chr11 34773807 34773840 -114009632 + AT_rich Low_complexity Low_complexity 1 33 0 290 227 250 8 chr11 34774494 34774626 -114008846 - MER103 DNA DNA -1 165 2 1654 157 3 43 chr11 34774792 34775097 -114008375 + AluJb SINE Alu 1 293 -19 375 23 0 0 chr11 34775098 34775142 -114008330 + (CA)n Simple_repeat Simple_repeat 1 44 0 442 263 0 66 chr11 34775324 34775476 -114007996 - MER112 DNA MER1_type -17 243 102 300 179 12 95 chr11 34775529 34775613 -114007859 + MER103 DNA DNA 11 87 -79 384 262 99 81 chr11 34775864 34776098 -114007374 + MIR SINE MIR 25 262 0 207 0 0 0 chr11 34776725 34776748 -114006724 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2342 57 4 0 chr11 34776751 34777031 -114006441 - AluSx SINE Alu -31 281 1 1031 62 0 0 chr11 34777983 34778113 -114005359 - AluY SINE Alu -9 302 173 213 324 14 0 chr11 34778641 34778715 -114004757 + L2 LINE L2 2897 2971 -301 * 910 305 78 22 chr11 34778701 34779101 -114004371 - L2 LINE L2 -718 2596 2175 2316 112 0 3 chr11 34779568 34779881 -114003591 - AluSq SINE Alu -1 312 1 590 295 65 5 chr11 34780041 34780241 -114003231 - L1ME LINE L1 -406 5715 5504 566 280 59 0 chr11 34780648 34780834 -114002638 - MER117 DNA MER1_type 0 197 1 933 256 26 0 chr11 34781057 34781291 -114002181 + MIR SINE MIR 13 252 -10 3272 137 12 30 chr11 34781296 34781901 -114001571 + L1MB7 LINE L1 5587 6180 -4 1998 141 7 0 chr11 34782265 34782548 -114000924 - AluJb SINE Alu -16 296 12 21 36 0 0 chr11 34782802 34782830 -114000642 + AT_rich Low_complexity Low_complexity 1 28 0 1775 141 14 24 chr11 34782960 34783250 -114000222 - AluJo SINE Alu -21 291 5 412 258 141 39 chr11 34783461 34783570 -113999902 - L1ME LINE L1 -545 5576 5480 189 0 0 0 chr11 34783570 34783591 -113999881 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 412 258 141 39 chr11 34783591 34784038 -113999434 - L1ME LINE L1 -641 5480 4966 378 171 0 24 chr11 34785384 34785466 -113998006 + MER116 DNA Mariner 1 80 0 856 182 0 0 chr11 34785784 34785927 -113997545 + FLAM_C SINE Alu 1 143 0 2300 96 0 0 chr11 34785990 34786281 -113997191 + AluSx SINE Alu 1 291 -21 753 164 0 0 chr11 34786548 34786664 -113996808 - FRAM SINE Alu -21 155 40 246 51 26 0 chr11 34786674 34786713 -113996759 + (TTTTG)n Simple_repeat Simple_repeat 1 180 0 2040 143 4 0 chr11 34786713 34786993 -113996479 - AluSx SINE Alu -31 281 1 21 36 0 0 chr11 34787139 34787167 -113996305 + AT_rich Low_complexity Low_complexity 1 28 0 446 319 35 0 chr11 34787221 34787362 -113996110 - MIR3 SINE MIR -13 195 50 2002 141 0 3 chr11 34787600 34787906 -113995566 + AluJb SINE Alu 1 305 -7 2285 97 3 0 chr11 34788094 34788384 -113995088 - AluSp SINE Alu -8 305 15 216 0 0 0 chr11 34789443 34789467 -113994005 + (A)n Simple_repeat Simple_repeat 1 24 0 720 252 105 8 chr11 34789704 34790077 -113993395 - L1M4 LINE L1 -2878 3268 2860 1776 141 62 0 chr11 34790086 34790392 -113993080 - L1PA16 LINE L1 -36 6130 5806 1157 248 107 10 chr11 34790394 34790899 -113992573 - L1M4 LINE L1 -3276 2870 2317 238 104 21 21 chr11 34790899 34790947 -113992525 + (TCCC)n Simple_repeat Simple_repeat 3 50 0 758 146 0 24 chr11 34791969 34792092 -113991380 + AluJo SINE Alu 14 133 -179 320 26 0 0 chr11 34792333 34792371 -113991101 - L1P LINE L1 -3572 2574 2537 * 2286 150 54 14 chr11 34792365 34792806 -113990666 + L1MC3 LINE L1 7102 7560 -225 2065 123 0 3 chr11 34792814 34793167 -113990305 - AluSx SINE Alu 0 352 1 1852 224 39 7 chr11 34793171 34793716 -113989756 - L1M4 LINE L1 -784 5362 4801 592 269 186 25 chr11 34793899 34794174 -113989298 + L2 LINE L2 2995 3313 0 508 240 103 14 chr11 34794224 34794370 -113989102 - MIR SINE MIR 0 262 104 553 186 86 14 chr11 34794432 34794572 -113988900 + MLT1A1 LTR MaLR 1 150 -215 2089 130 7 7 chr11 34794578 34794886 -113988586 + AluSx SINE Alu 1 308 -4 1047 181 0 0 chr11 34795016 34795176 -113988296 + AluJo SINE Alu 136 295 -17 202 353 72 24 chr11 34795187 34795394 -113988078 + L2 LINE L2 2857 3073 -199 207 0 0 0 chr11 34795909 34795932 -113987540 + (A)n Simple_repeat Simple_repeat 1 23 0 23 33 0 0 chr11 34796107 34796137 -113987335 + AT_rich Low_complexity Low_complexity 1 30 0 2163 87 7 14 chr11 34796137 34796424 -113987048 - AluSq SINE Alu -28 285 1 2317 100 0 3 chr11 34797487 34797788 -113985684 + AluSx SINE Alu 1 300 -12 839 81 0 0 chr11 34797986 34798097 -113985375 - AluSq/x SINE Alu -201 111 1 1176 255 136 20 chr11 34799030 34799640 -113983832 - L2 LINE L2 -1 3312 2584 1359 148 15 50 chr11 34799870 34800123 -113983349 - MER33 DNA MER1_type -2277 308 67 1919 148 27 0 chr11 34800123 34800420 -113983052 - AluJb SINE Alu -7 305 1 1359 148 15 50 chr11 34800420 34800497 -113982975 - MER33 DNA MER1_type -2518 67 1 598 207 29 0 chr11 34800880 34801020 -113982452 - Charlie1 DNA MER1_type 0 2761 2618 * 1236 235 20 101 chr11 34800988 34801176 -113982296 - Charlie1 DNA MER1_type -2264 497 296 637 157 74 8 chr11 34801176 34801297 -113982175 + FLAM_A SINE Alu 1 129 -4 1236 235 20 101 chr11 34801297 34801644 -113981828 - Charlie1 DNA MER1_type -2465 296 5 23 0 0 0 chr11 34802657 34802680 -113980792 + AT_rich Low_complexity Low_complexity 1 23 0 316 231 175 42 chr11 34803157 34803300 -113980172 + MIR3 SINE MIR 22 183 -25 1887 87 113 7 chr11 34803927 34804202 -113979270 + AluSg1 SINE Alu 6 309 0 205 343 0 0 chr11 34804331 34804398 -113979074 - L2 LINE L2 0 3272 3206 1325 158 77 0 chr11 34804498 34804757 -113978715 + MER46B DNA MER2_type 83 236 0 234 297 99 20 chr11 34804757 34804858 -113978614 + MIR SINE MIR 153 261 -1 1601 144 14 51 chr11 34804865 34805157 -113978315 - AluJb SINE Alu -27 285 5 182 105 26 0 chr11 34805432 34805470 -113978002 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1330 153 5 31 chr11 34805482 34805633 -113977839 - AluJb SINE Alu -28 284 139 2391 112 0 6 chr11 34805633 34805947 -113977525 - AluSx SINE Alu 0 312 1 1330 153 5 31 chr11 34805947 34806017 -113977455 - AluJb SINE Alu -173 139 69 349 280 108 0 chr11 34806479 34806572 -113976900 + L2 LINE L2 3170 3272 0 203 0 0 36 chr11 34806827 34806855 -113976617 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 458 194 0 0 chr11 34806906 34806978 -113976494 + FRAM SINE Alu 74 145 -31 294 355 18 35 chr11 34807110 34807279 -113976193 + L2 LINE L2 2333 2498 -816 201 382 0 10 chr11 34807296 34807398 -113976074 - L2 LINE L2 -818 2496 2396 969 253 128 52 chr11 34807434 34807916 -113975556 - MLT1L LTR MaLR -10 605 73 2333 94 0 0 chr11 34807916 34808213 -113975259 + AluSg SINE Alu 1 297 -13 969 253 128 52 chr11 34808213 34808292 -113975180 - MLT1L LTR MaLR -542 73 1 696 254 53 14 chr11 34808292 34808501 -113974971 - L2 LINE L2 -946 2368 2152 284 328 102 0 chr11 34808501 34808629 -113974843 + MIR SINE MIR 118 258 -4 212 192 77 19 chr11 34809177 34809229 -113974243 + MER5A DNA MER1_type 134 188 -1 1873 126 0 73 chr11 34809319 34809621 -113973851 - AluSx SINE Alu -23 289 10 2167 124 10 0 chr11 34809639 34809946 -113973526 - AluSx SINE Alu -2 310 1 1962 140 3 11 chr11 34810356 34810665 -113972807 - AluSx SINE Alu 0 307 1 1762 154 29 0 chr11 34810704 34810977 -113972495 - AluSx SINE Alu -22 290 10 1728 131 4 15 chr11 34812896 34813156 -113970316 + AluJb SINE Alu 3 259 -53 559 164 14 164 chr11 34813388 34813454 -113970018 - MER58A DNA MER1_type -2198 222 148 1573 110 18 13 chr11 34813454 34813682 -113969790 - MER30 DNA MER1_type -1 229 1 559 164 14 164 chr11 34813682 34813828 -113969644 - MER58A DNA MER1_type -2272 148 42 378 266 80 83 chr11 34813891 34814252 -113969220 + HAL1 LINE L1 930 1289 -1218 2340 101 0 0 chr11 34814327 34814624 -113968848 + AluSx SINE Alu 1 297 -15 261 152 215 38 chr11 34814624 34814703 -113968769 + L1MC5 LINE L1 7823 7915 -46 397 245 220 30 chr11 34814747 34814947 -113968525 - L1ME4a LINE L1 -4 6117 5880 401 151 23 12 chr11 34815190 34815276 -113968196 - LTR67 LTR ERVL -13 544 458 208 304 96 35 chr11 34815714 34815829 -113967643 + MIR SINE MIR 81 202 -60 418 282 153 31 chr11 34816343 34816506 -113966966 - MIR3 SINE MIR -14 194 12 1287 112 0 43 chr11 34816819 34817006 -113966466 + AluSx SINE Alu 1 179 -133 323 241 27 89 chr11 34817358 34817456 -113966016 - L1ME4a LINE L1 -289 5881 5778 2238 156 46 10 chr11 34817456 34817867 -113965605 - MSTB LTR MaLR 0 426 1 323 241 27 89 chr11 34817867 34817992 -113965480 - L1ME4a LINE L1 -392 5778 5672 334 359 19 6 chr11 34818010 34818169 -113965303 - L1ME4a LINE L1 -533 5631 5471 23 0 0 0 chr11 34818186 34818209 -113965263 + AT_rich Low_complexity Low_complexity 1 23 0 1779 139 29 45 chr11 34818218 34818356 -113965116 + AluJb SINE Alu 1 140 -172 2454 75 0 10 chr11 34818356 34818661 -113964811 + AluSp SINE Alu 1 302 -11 1779 139 29 45 chr11 34818661 34818831 -113964641 + AluJb SINE Alu 140 304 -8 456 163 71 0 chr11 34818832 34818930 -113964542 + Charlie4 DNA MER1_type 85 189 -1772 295 218 223 6 chr11 34818952 34819287 -113964185 - L1ME4a LINE L1 -748 5398 5012 1343 182 5 9 chr11 34819304 34819524 -113963948 - AluJo SINE Alu -87 225 7 692 252 115 46 chr11 34819537 34820104 -113963368 - L1ME4a LINE L1 -1137 5009 4404 3555 167 17 16 chr11 34820464 34821172 -113962300 + L1MB7 LINE L1 5456 6164 -20 261 269 224 13 chr11 34871299 34871455 -113912017 + MIR SINE MIR 72 260 -2 2110 68 0 19 chr11 34871864 34872130 -113911342 + AluY SINE Alu 36 296 -15 1456 129 9 0 chr11 34872415 34872632 -113910840 - AluSg/x SINE Alu -7 302 84 187 346 62 15 chr11 34873158 34873288 -113910184 + L2 LINE L2 3125 3260 -12 209 171 0 0 chr11 34873303 34873338 -113910134 + (TG)n Simple_repeat Simple_repeat 2 36 0 1980 132 54 60 chr11 34873339 34873688 -113909784 - MER7A DNA MER2_type 0 346 2 267 31 0 0 chr11 34873689 34873721 -113909751 + (TG)n Simple_repeat Simple_repeat 1 32 0 277 195 122 12 chr11 34873804 34873886 -113909586 + MIR SINE MIR 105 195 -67 695 288 241 22 chr11 34873979 34874382 -113909090 + L2 LINE L2 2819 3309 -4 1442 182 20 50 chr11 34875499 34875796 -113907676 - AluJb SINE Alu -24 288 1 940 254 125 10 chr11 34875900 34876203 -113907269 - MER46C DNA MER2_type 0 338 1 25 65 0 0 chr11 34876730 34876776 -113906696 + AT_rich Low_complexity Low_complexity 1 46 0 2226 105 27 0 chr11 34878083 34878379 -113905093 + AluSx SINE Alu 1 304 -8 2297 93 7 0 chr11 34878835 34879125 -113904347 - AluSg SINE Alu -18 292 1 307 237 153 42 chr11 34879147 34879265 -113904207 - MIR3 SINE MIR -5 203 73 324 0 0 0 chr11 34879320 34879356 -113904116 + (TAGA)n Simple_repeat Simple_repeat 3 38 0 2223 99 0 0 chr11 34879471 34879763 -113903709 - AluSx SINE Alu -20 292 1 1194 229 61 107 chr11 34882769 34883179 -113900293 - L1MC5 LINE L1 -36 7925 7498 2130 53 4 19 chr11 34883179 34883443 -113900029 + AluY SINE Alu 23 282 -29 261 0 0 0 chr11 34883446 34883475 -113899997 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2315 79 0 0 chr11 34883484 34883790 -113899682 + AluSc SINE Alu 1 306 0 1194 229 61 107 chr11 34883790 34883989 -113899483 - L1MC5 LINE L1 -473 7488 7330 338 130 111 0 chr11 34884050 34884104 -113899368 + Tigger2 DNA MER2_type 1 60 -2658 2380 113 89 34 chr11 34884112 34884355 -113899117 + Tigger2 DNA MER2_type 2281 2558 -160 1310 182 79 41 chr11 34884355 34884646 -113898826 + AluJo SINE Alu 4 305 -7 2380 113 89 34 chr11 34884646 34884817 -113898655 + Tigger2 DNA MER2_type 2558 2718 0 2421 85 0 3 chr11 34885118 34885425 -113898047 + AluSx SINE Alu 1 306 -6 2364 92 0 0 chr11 34886483 34886788 -113896684 - AluSx SINE Alu -7 305 1 2349 92 0 10 chr11 34887010 34887313 -113896159 - AluSg SINE Alu -10 300 1 2472 65 0 7 chr11 34887575 34887884 -113895588 - AluSc SINE Alu 0 309 3 186 270 79 16 chr11 34889298 34889361 -113894111 - MIR SINE MIR -168 94 28 384 279 23 107 chr11 34889644 34889859 -113893613 + L2 LINE L2 2963 3159 -113 2171 105 3 16 chr11 34890338 34890644 -113892828 + AluSx SINE Alu 1 302 -10 1754 101 4 8 chr11 34890991 34891257 -113892215 - AluY SINE Alu 0 308 44 389 123 0 0 chr11 34891263 34891320 -113892152 + AluS SINE Alu 1 57 -244 2156 111 0 17 chr11 34891524 34891655 -113891817 + AluSq SINE Alu 5 137 -176 2139 118 0 0 chr11 34891655 34891954 -113891518 + AluSg SINE Alu 1 299 0 2156 111 0 17 chr11 34891954 34892118 -113891354 + AluSq SINE Alu 137 296 -17 467 259 130 0 chr11 34892450 34892581 -113890891 - MIR3 SINE MIR -1 207 60 436 285 66 0 chr11 34893751 34893888 -113889584 + MIR SINE MIR 117 262 0 2197 124 7 0 chr11 34893942 34894240 -113889232 + AluJb SINE Alu 1 300 -12 1037 155 23 17 chr11 34894240 34894414 -113889058 + AluJb SINE Alu 134 308 -4 4016 93 27 30 chr11 34894539 34895133 -113888339 - LTR14B LTR ERVK 0 608 17 2004 107 52 17 chr11 34895806 34896096 -113887376 + AluSq SINE Alu 1 300 -13 374 197 150 39 chr11 34896535 34896662 -113886810 - L2 LINE L2 -4 3309 3169 796 164 8 0 chr11 34897051 34897179 -113886293 - FLAM_A SINE Alu -2 131 3 192 318 0 15 chr11 34897644 34897710 -113885762 - MIR SINE MIR -60 148 84 2597 63 0 0 chr11 34897839 34898139 -113885333 + AluSc SINE Alu 1 300 -9 5352 134 52 25 chr11 34898213 34899157 -113884315 - LTR5 LTR ERVK 0 969 1 469 184 58 0 chr11 34899423 34899510 -113883962 + AluJb SINE Alu 208 299 -13 672 211 146 71 chr11 34899511 34899665 -113883807 - L1M4 LINE L1 -945 5201 5060 1868 160 10 0 chr11 34899665 34899959 -113883513 - AluJb SINE Alu -15 297 1 672 211 146 71 chr11 34899959 34900026 -113883446 - L1M4 LINE L1 -1086 5060 4999 2315 73 0 0 chr11 34900026 34900299 -113883173 - AluY SINE Alu -22 289 17 672 211 146 71 chr11 34900299 34900356 -113883116 - L1M4 LINE L1 -1147 4999 4901 688 165 0 0 chr11 34900383 34900486 -113882986 - AluSg/x SINE Alu -18 292 190 679 125 116 0 chr11 34900481 34900593 -113882879 - AluJo/FLAM SINE Alu -186 126 2 * 1212 171 87 21 chr11 34900621 34900908 -113882564 - L1M4 LINE L1 -1300 4846 4541 1163 111 84 0 chr11 34900908 34901098 -113882374 + L1PA13 LINE L1 5955 6160 -3 754 181 47 72 chr11 34901485 34901556 -113881916 + MER5A DNA MER1_type 1 72 -117 1820 163 13 13 chr11 34901556 34901863 -113881609 + AluJb SINE Alu 1 307 -5 754 181 47 72 chr11 34901863 34901984 -113881488 + MER5A DNA MER1_type 72 188 -1 2125 115 7 0 chr11 34901993 34902279 -113881193 - AluSx SINE Alu -11 301 14 1865 143 52 3 chr11 34902677 34902964 -113880508 - AluJo SINE Alu -11 301 1 442 235 33 82 chr11 34903925 34904108 -113879364 - MER104 DNA Tc2 -5 175 2 665 252 141 66 chr11 34904171 34904548 -113878924 - MLT1L LTR MaLR -210 405 1 2169 129 0 0 chr11 34904657 34904959 -113878513 - AluSg SINE Alu -3 307 6 2114 135 0 3 chr11 34904970 34905259 -113878213 - AluSx SINE Alu -24 288 1 771 172 10 98 chr11 34905403 34905606 -113877866 - AluSg/x SINE Alu -4 308 124 2307 117 3 0 chr11 34907036 34907344 -113876128 - AluSx SINE Alu -1 311 3 280 226 97 21 chr11 34907408 34907501 -113875971 - L1ME4a LINE L1 -38 6083 5984 363 274 9 0 chr11 34907535 34907641 -113875831 - L1MC4 LINE L1 -1 8041 7935 728 98 10 0 chr11 34907641 34907743 -113875729 - FLAM_C SINE Alu -38 105 3 320 275 22 36 chr11 34908742 34908880 -113874592 - MIR SINE MIR -21 241 106 600 126 0 29 chr11 34908945 34909048 -113874424 - AluSg/x SINE Alu 0 310 211 1926 161 0 0 chr11 34909821 34910106 -113873366 - AluJb SINE Alu -27 285 1 404 313 63 13 chr11 34910111 34910299 -113873173 - MIR SINE MIR -65 197 1 2032 118 3 3 chr11 34910649 34910937 -113872535 + AluSx SINE Alu 1 288 -24 205 29 29 29 chr11 34910940 34910975 -113872497 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1769 167 55 6 chr11 34910975 34911322 -113872150 - L1MB7 LINE L1 -7 6177 5814 3078 191 24 40 chr11 34911336 34911712 -113871760 - L1MB4 LINE L1 0 6180 5818 1611 159 36 40 chr11 34911712 34912013 -113871459 - AluJo SINE Alu -12 300 1 3078 191 24 40 chr11 34912013 34912312 -113871160 - L1MB4 LINE L1 -362 5818 5516 775 205 6 0 chr11 34912831 34912987 -113870485 + LTR31 LTR ERV1 387 543 -76 205 152 0 0 chr11 34912989 34913022 -113870450 + A-rich Low_complexity Low_complexity 2 34 0 933 187 23 0 chr11 34913634 34913805 -113869667 - FAM SINE Alu 0 175 1 528 226 0 17 chr11 34913822 34913937 -113869535 + MER81 DNA DNA 2 114 0 182 278 206 54 chr11 34913976 34914120 -113869352 - MIR SINE MIR -4 258 137 2241 109 3 0 chr11 34914120 34914413 -113869059 - AluSq SINE Alu -19 294 1 182 278 206 54 chr11 34914413 34914491 -113868981 - MIR SINE MIR -125 137 2 306 314 0 9 chr11 34915126 34915231 -113868241 - L2 LINE L2 -505 2809 2706 825 239 24 10 chr11 34915665 34915874 -113867598 + MER112 DNA MER1_type 12 223 -37 1949 122 35 29 chr11 34916761 34917072 -113866400 - AluSq SINE Alu 0 313 1 368 291 80 20 chr11 34917955 34918106 -113865366 + MIR SINE MIR 90 249 -13 48 105 0 0 chr11 34918147 34918328 -113865144 + AT_rich Low_complexity Low_complexity 1 181 0 341 247 0 13 chr11 34918366 34918443 -113865029 + L1MA7 LINE L1 6187 6262 -29 1793 157 0 42 chr11 34918444 34918757 -113864715 - AluJb SINE Alu -12 300 1 1669 138 8 23 chr11 34918897 34919158 -113864314 + AluJo SINE Alu 54 310 -2 2139 142 3 0 chr11 34919254 34919557 -113863915 + AluSp SINE Alu 2 305 -8 2278 102 7 0 chr11 34919569 34919872 -113863600 + AluSx SINE Alu 1 305 -7 2074 126 3 0 chr11 34919881 34920174 -113863298 + AluSx SINE Alu 1 294 -18 227 170 0 38 chr11 34920661 34920689 -113862783 + (TTCA)n Simple_repeat Simple_repeat 2 29 -23 2202 116 7 0 chr11 34920689 34920992 -113862480 - AluSx SINE Alu -7 305 1 227 170 0 38 chr11 34920992 34921016 -113862456 + (TTCA)n Simple_repeat Simple_repeat 29 52 0 430 312 124 30 chr11 34921053 34921287 -113862185 - L2 LINE L2 -40 3232 2977 213 39 0 0 chr11 34922575 34922601 -113860871 + (T)n Simple_repeat Simple_repeat 1 26 0 2531 79 0 0 chr11 34922781 34923086 -113860386 + AluSx SINE Alu 1 305 -7 1749 159 3 30 chr11 34923495 34923796 -113859676 + AluJo SINE Alu 1 293 -19 21 89 0 0 chr11 34923890 34923946 -113859526 + AT_rich Low_complexity Low_complexity 1 56 0 2333 88 0 3 chr11 34924061 34924356 -113859116 - AluSg SINE Alu -16 294 1 2558 47 0 3 chr11 34925574 34925870 -113857602 - AluY SINE Alu -16 295 1 2336 88 3 3 chr11 34926797 34927093 -113856379 + AluSx SINE Alu 1 296 -16 333 269 213 31 chr11 34927515 34927675 -113855797 + MIR3 SINE MIR 3 191 -17 271 324 81 7 chr11 34927753 34927889 -113855583 + MIR SINE MIR 73 218 -44 210 150 0 0 chr11 34928181 34928221 -113855251 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 1857 177 10 0 chr11 34928665 34928970 -113854502 + AluSx SINE Alu 1 308 -4 970 162 0 45 chr11 34928987 34929166 -113854306 + AluJo SINE Alu 26 196 -116 1968 124 57 10 chr11 34929213 34929511 -113853961 - AluSx SINE Alu 0 312 1 27 0 0 0 chr11 34929574 34929601 -113853871 + AT_rich Low_complexity Low_complexity 1 27 0 2450 138 52 5 chr11 34930322 34930729 -113852743 + MSTA LTR MaLR 1 426 -2 2322 102 3 0 chr11 34930887 34931192 -113852280 - AluSq SINE Alu -7 306 1 2032 116 193 11 chr11 34931214 34931593 -113851879 + MER83 LTR ERV1 1 448 0 1706 143 27 48 chr11 34931641 34931935 -113851537 - AluJb SINE Alu -24 288 1 1997 123 7 14 chr11 34931980 34932273 -113851199 - AluSx SINE Alu -21 291 1 1369 191 0 0 chr11 34932869 34933099 -113850373 + MER46A DNA MER2_type 1 230 -6 2170 135 0 0 chr11 34935296 34935592 -113847880 - AluSq SINE Alu -17 296 1 251 266 75 12 chr11 34936558 34936696 -113846776 - MIR SINE MIR -51 157 28 2328 83 24 0 chr11 34937144 34937434 -113846038 - AluSx SINE Alu -15 297 1 1780 118 51 67 chr11 34937456 34937771 -113845701 - AluJb SINE Alu -1 311 2 367 127 32 16 chr11 34937856 34937919 -113845553 - MER6 DNA MER2_type 0 865 802 207 0 0 0 chr11 34938187 34938210 -113845262 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2385 57 4 0 chr11 34938213 34938493 -113844979 - AluSx SINE Alu -31 281 1 1052 62 0 0 chr11 34939445 34939575 -113843897 - AluY SINE Alu -9 302 173 1897 138 7 7 chr11 34939782 34940073 -113843399 + AluJb SINE Alu 13 303 -9 2508 70 0 0 chr11 34940274 34940573 -113842899 - AluSq SINE Alu -14 299 1 592 269 186 25 chr11 34940632 34940907 -113842565 + L2 LINE L2 2995 3313 0 508 240 103 14 chr11 34940957 34941103 -113842369 - MIR SINE MIR 0 262 104 553 186 86 14 chr11 34941165 34941305 -113842167 + MLT1A1 LTR MaLR 1 150 -215 2081 130 7 7 chr11 34941311 34941618 -113841854 + AluSx SINE Alu 1 307 -5 1123 150 0 0 chr11 34941748 34941908 -113841564 + FRAM SINE Alu 1 159 -17 572 233 20 33 chr11 34942294 34942444 -113841028 + MIR SINE MIR 7 154 -108 1805 158 60 0 chr11 34942449 34942785 -113840687 + MER46B DNA MER2_type 6 236 0 234 297 99 20 chr11 34942785 34942886 -113840586 + MIR SINE MIR 153 261 -1 1601 144 14 51 chr11 34942893 34943185 -113840287 - AluJb SINE Alu -27 285 5 182 105 26 0 chr11 34943460 34943498 -113839974 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1330 153 5 31 chr11 34943510 34943661 -113839811 - AluJb SINE Alu -28 284 139 2391 112 0 6 chr11 34943661 34943975 -113839497 - AluSx SINE Alu 0 312 1 1330 153 5 31 chr11 34943975 34944045 -113839427 - AluJb SINE Alu -173 139 69 349 280 108 0 chr11 34944507 34944600 -113838872 + L2 LINE L2 3170 3272 0 203 0 0 36 chr11 34944855 34944883 -113838589 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 458 194 0 0 chr11 34944934 34945006 -113838466 + FRAM SINE Alu 74 145 -31 294 355 18 35 chr11 34945138 34945307 -113838165 + L2 LINE L2 2333 2498 -816 201 382 0 10 chr11 34945324 34945426 -113838046 - L2 LINE L2 -818 2496 2396 969 253 128 52 chr11 34945462 34945944 -113837528 - MLT1L LTR MaLR -10 605 73 2333 94 0 0 chr11 34945944 34946241 -113837231 + AluSg SINE Alu 1 297 -13 969 253 128 52 chr11 34946241 34946320 -113837152 - MLT1L LTR MaLR -542 73 1 696 254 53 14 chr11 34946320 34946529 -113836943 - L2 LINE L2 -946 2368 2152 284 328 102 0 chr11 34946529 34946657 -113836815 + MIR SINE MIR 118 258 -4 212 192 77 19 chr11 34947205 34947257 -113836215 + MER5A DNA MER1_type 134 188 -1 1873 126 0 73 chr11 34947347 34947649 -113835823 - AluSx SINE Alu -23 289 10 2167 124 10 0 chr11 34947667 34947974 -113835498 - AluSx SINE Alu -2 310 1 1962 140 3 11 chr11 34948384 34948693 -113834779 - AluSx SINE Alu 0 307 1 1762 154 29 0 chr11 34948732 34949005 -113834467 - AluSx SINE Alu -22 290 10 2011 122 6 38 chr11 34950924 34951244 -113832228 + AluJb SINE Alu 3 312 0 193 278 0 19 chr11 34951385 34951439 -113832033 - MER5B DNA MER1_type -82 96 44 3283 80 2 0 chr11 34951473 34951909 -113831563 - LTR3b LTR ERVK 0 437 1 559 164 14 164 chr11 34952001 34952067 -113831405 - MER58A DNA MER1_type -2198 222 148 1573 110 18 13 chr11 34952067 34952295 -113831177 - MER30 DNA MER1_type -1 229 1 559 164 14 164 chr11 34952295 34952441 -113831031 - MER58A DNA MER1_type -2272 148 42 378 266 80 83 chr11 34952504 34952865 -113830607 + HAL1 LINE L1 930 1289 -1218 2340 101 0 0 chr11 34952940 34953237 -113830235 + AluSx SINE Alu 1 297 -15 261 152 215 38 chr11 34953237 34953316 -113830156 + L1MC5 LINE L1 7823 7915 -46 419 240 220 30 chr11 34953360 34953560 -113829912 - L1ME4a LINE L1 -4 6117 5880 401 151 23 12 chr11 34953803 34953889 -113829583 - LTR67 LTR ERVL -13 544 458 208 304 96 35 chr11 34954327 34954442 -113829030 + MIR SINE MIR 81 202 -60 418 282 153 31 chr11 34954956 34955119 -113828353 - MIR3 SINE MIR -14 194 12 1287 112 0 43 chr11 34955432 34955619 -113827853 + AluSx SINE Alu 1 179 -133 323 241 27 89 chr11 34955969 34956067 -113827405 - L1ME4a LINE L1 -289 5881 5778 2238 156 46 10 chr11 34956067 34956478 -113826994 - MSTB LTR MaLR 0 426 1 323 241 27 89 chr11 34956478 34956603 -113826869 - L1ME4a LINE L1 -392 5778 5672 334 359 19 6 chr11 34956621 34956780 -113826692 - L1ME4a LINE L1 -533 5631 5471 23 0 0 0 chr11 34956797 34956820 -113826652 + AT_rich Low_complexity Low_complexity 1 23 0 1779 139 29 45 chr11 34956829 34956967 -113826505 + AluJb SINE Alu 1 140 -172 2430 82 0 10 chr11 34956967 34957272 -113826200 + AluSp SINE Alu 1 302 -11 1779 139 29 45 chr11 34957272 34957442 -113826030 + AluJb SINE Alu 140 304 -8 478 153 71 0 chr11 34957443 34957541 -113825931 + Charlie4 DNA MER1_type 85 189 -1772 295 218 223 6 chr11 34957563 34957898 -113825574 - L1ME4a LINE L1 -748 5398 5012 1326 182 5 9 chr11 34957915 34958135 -113825337 - AluJo SINE Alu -87 225 7 692 252 115 46 chr11 34958148 34958715 -113824757 - L1ME4a LINE L1 -1137 5009 4404 3555 167 17 16 chr11 34959075 34959783 -113823689 + L1MB7 LINE L1 5456 6164 -20 1050 183 0 6 chr11 34959915 34960090 -113823382 - FRAM SINE Alu -9 167 1 215 324 14 0 chr11 34960428 34960502 -113822970 + L2 LINE L2 2897 2971 -301 * 909 305 78 22 chr11 34960488 34960888 -113822584 - L2 LINE L2 -718 2596 2175 2375 109 0 3 chr11 34961355 34961668 -113821804 - AluSq SINE Alu -1 312 1 537 295 65 5 chr11 34961828 34962028 -113821444 - L1ME LINE L1 -406 5715 5504 559 280 59 0 chr11 34962435 34962621 -113820851 - MER117 DNA MER1_type 0 197 1 936 256 26 0 chr11 34962844 34963078 -113820394 + MIR SINE MIR 13 252 -10 3238 137 12 30 chr11 34963083 34963688 -113819784 + L1MB7 LINE L1 5587 6180 -4 2011 142 7 0 chr11 34964051 34964333 -113819139 - AluJb SINE Alu -17 295 12 21 36 0 0 chr11 34964587 34964615 -113818857 + AT_rich Low_complexity Low_complexity 1 28 0 1790 141 14 24 chr11 34964745 34965035 -113818437 - AluJo SINE Alu -21 291 5 350 258 141 39 chr11 34965246 34965355 -113818117 - L1ME LINE L1 -545 5576 5480 189 0 0 0 chr11 34965355 34965376 -113818096 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 350 258 141 39 chr11 34965376 34965823 -113817649 - L1ME LINE L1 -641 5480 4966 367 171 0 24 chr11 34967169 34967251 -113816221 + MER116 DNA Mariner 1 80 0 883 182 0 0 chr11 34967569 34967712 -113815760 + FLAM_C SINE Alu 1 143 0 2319 102 0 16 chr11 34967775 34968111 -113815361 + AluSx SINE Alu 1 312 0 753 164 0 0 chr11 34968332 34968448 -113815024 - FRAM SINE Alu -21 155 40 2098 139 0 0 chr11 34968458 34968778 -113814694 - AluSx SINE Alu 0 320 1 21 36 0 0 chr11 34968924 34968952 -113814520 + AT_rich Low_complexity Low_complexity 1 28 0 446 319 35 0 chr11 34969006 34969147 -113814325 - MIR3 SINE MIR -13 195 50 1992 144 0 3 chr11 34969385 34969691 -113813781 + AluJb SINE Alu 1 305 -7 2302 96 3 0 chr11 34969879 34970171 -113813301 - AluSp SINE Alu -6 307 15 192 40 0 0 chr11 34971230 34971255 -113812217 + (A)n Simple_repeat Simple_repeat 1 25 0 23 33 0 0 chr11 34971430 34971460 -113812012 + AT_rich Low_complexity Low_complexity 1 30 0 2173 84 7 14 chr11 34971460 34971747 -113811725 - AluSq SINE Alu -28 285 1 2313 103 0 3 chr11 34972810 34973112 -113810360 + AluSx SINE Alu 1 301 -11 562 221 29 0 chr11 34973280 34973420 -113810052 - Charlie1 DNA MER1_type 0 2761 2618 * 1261 231 20 101 chr11 34973388 34973576 -113809896 - Charlie1 DNA MER1_type -2264 497 296 637 157 74 8 chr11 34973576 34973697 -113809775 + FLAM_A SINE Alu 1 129 -4 1261 231 20 101 chr11 34973697 34974044 -113809428 - Charlie1 DNA MER1_type -2465 296 5 23 0 0 0 chr11 34975057 34975080 -113808392 + AT_rich Low_complexity Low_complexity 1 23 0 316 231 175 42 chr11 34975557 34975700 -113807772 + MIR3 SINE MIR 22 183 -25 1872 91 113 7 chr11 34976327 34976602 -113806870 + AluSg1 SINE Alu 6 309 0 364 320 40 27 chr11 34976731 34976881 -113806591 - L2 LINE L2 0 3272 3121 2367 78 3 10 chr11 34977060 34977366 -113806106 - AluSx SINE Alu -8 304 1 1176 253 162 18 chr11 34978299 34978909 -113804563 - L2 LINE L2 -1 3312 2584 1359 148 15 50 chr11 34979139 34979392 -113804080 - MER33 DNA MER1_type -2277 308 67 1919 148 27 0 chr11 34979392 34979689 -113803783 - AluJb SINE Alu -7 305 1 1359 148 15 50 chr11 34979689 34979766 -113803706 - MER33 DNA MER1_type -2518 67 1 2068 131 0 0 chr11 34980405 34980715 -113802757 + AluSg SINE Alu 1 310 0 363 356 55 14 chr11 34980715 34980861 -113802611 - MIR3 SINE MIR -27 181 30 21 57 0 0 chr11 34980975 34981010 -113802462 + AT_rich Low_complexity Low_complexity 1 35 0 281 259 0 0 chr11 34981851 34981909 -113801563 - L2 LINE L2 -14 3258 3201 306 0 0 0 chr11 34982091 34982125 -113801347 + (ATG)n Simple_repeat Simple_repeat 1 34 0 369 0 0 0 chr11 34982125 34982166 -113801306 + (TTA)n Simple_repeat Simple_repeat 3 43 0 1844 114 40 4 chr11 34982169 34982441 -113801031 - AluSx SINE Alu -30 282 1 1946 142 10 0 chr11 34982762 34983051 -113800421 + AluJb SINE Alu 5 296 -16 51 31 0 0 chr11 34984166 34984231 -113799241 + AT_rich Low_complexity Low_complexity 1 65 0 208 133 26 108 chr11 34984231 34984426 -113799046 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 213 174 14 43 chr11 34984429 34984498 -113798974 + (TAAA)n Simple_repeat Simple_repeat 1 67 0 1398 178 21 4 chr11 34984909 34985190 -113798282 - L1MD3 LINE L1 0 7995 7710 600 196 39 98 chr11 34985927 34986101 -113797371 + L1MC4 LINE L1 7530 7686 -356 1531 171 0 40 chr11 34986101 34986376 -113797096 + AluJb SINE Alu 2 265 -47 600 196 39 98 chr11 34986376 34986456 -113797016 + L1MC4 LINE L1 7686 7769 -273 326 314 58 58 chr11 34986752 34986924 -113796548 + MIR3 SINE MIR 6 177 -31 2227 98 3 0 chr11 34987022 34987308 -113796164 + AluSp SINE Alu 1 287 -26 22 0 0 0 chr11 34987398 34987420 -113796052 + AT_rich Low_complexity Low_complexity 1 22 0 2031 119 32 0 chr11 34987449 34987726 -113795746 - AluSx SINE Alu -26 286 1 314 270 44 13 chr11 34987858 34988017 -113795455 - L1ME4a LINE L1 -4 6117 5954 455 60 134 0 chr11 34988023 34988090 -113795382 - MADE1 DNA Mariner -4 76 1 1260 174 17 49 chr11 34988206 34988494 -113794978 - L1MB2 LINE L1 -12 6159 5881 647 245 0 13 chr11 34988691 34988842 -113794630 + MIR SINE MIR 5 153 -109 250 282 70 14 chr11 34988853 34988924 -113794548 + MER91C DNA MER1_type 33 107 -33 343 287 0 43 chr11 34988935 34989050 -113794422 + MIR SINE MIR 145 254 -8 2262 99 0 0 chr11 34989051 34989384 -113794088 - AluSx SINE Alu 0 333 1 207 0 0 0 chr11 34989681 34989704 -113793768 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 2302 64 20 24 chr11 34989927 34990224 -113793248 + AluY SINE Alu 1 296 -15 1699 166 7 14 chr11 34990458 34990741 -113792731 + AluJb SINE Alu 1 313 0 209 0 62 0 chr11 34990741 34990773 -113792699 + (TAA)n Simple_repeat Simple_repeat 1 180 0 800 158 0 0 chr11 34990773 34990893 -113792579 - FLAM_C SINE Alu -23 120 1 336 342 0 0 chr11 34991063 34991142 -113792330 - L2 LINE L2 -45 3227 3149 2411 90 0 0 chr11 34991301 34991602 -113791870 + AluSc SINE Alu 1 301 -8 476 62 0 0 chr11 34991719 34991784 -113791688 - AluSp/q SINE Alu -9 304 240 3809 151 60 88 chr11 34991855 34992007 -113791465 + L1MB4 LINE L1 5290 5445 -735 260 200 0 0 chr11 34992007 34992047 -113791425 + AluYb8 SINE Alu 135 174 -134 3809 151 60 88 chr11 34992047 34992588 -113790884 + L1MB4 LINE L1 5445 5995 -185 1523 182 12 102 chr11 34992588 34992989 -113790483 - MLT1A1 LTR MaLR 0 365 1 3809 151 60 88 chr11 34992989 34993158 -113790314 + L1MB4 LINE L1 5995 6167 -13 259 130 37 0 chr11 34993166 34993220 -113790252 + (TA)n Simple_repeat Simple_repeat 1 56 0 2220 120 0 0 chr11 34993273 34993572 -113789900 + AluSx SINE Alu 1 299 -13 1739 187 10 0 chr11 34993664 34993963 -113789509 + AluJb SINE Alu 1 302 -10 2458 78 0 3 chr11 34993966 34994274 -113789198 + AluSg SINE Alu 1 307 -3 2111 118 0 10 chr11 34995371 34995680 -113787792 + AluSq SINE Alu 1 306 0 21 36 0 0 chr11 34995896 34995924 -113787548 + AT_rich Low_complexity Low_complexity 1 28 0 488 224 8 15 chr11 34996350 34996484 -113786988 - L1MA4 LINE L1 0 6300 6168 435 242 104 74 chr11 34997178 34997350 -113786122 - MIR SINE MIR -18 244 62 2327 68 3 53 chr11 34997350 34997671 -113785801 - AluY SINE Alu -6 305 1 435 242 104 74 chr11 34997671 34997729 -113785743 - MIR SINE MIR -200 62 7 2028 111 76 0 chr11 34998153 34998517 -113784955 + AluSg SINE Alu 1 386 0 2301 95 3 10 chr11 34998857 34999162 -113784310 + AluSx SINE Alu 1 303 -9 282 257 19 9 chr11 35000634 35000739 -113782733 + (TA)n Simple_repeat Simple_repeat 2 107 0 2003 139 3 7 chr11 35001415 35001709 -113781763 - AluJb SINE Alu -13 299 7 2180 111 3 0 chr11 35001736 35002034 -113781438 - AluSx SINE Alu -13 299 1 21 57 0 0 chr11 35002750 35002785 -113780687 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr11 35002913 35002934 -113780538 + AT_rich Low_complexity Low_complexity 1 21 0 3508 135 15 13 chr11 35003186 35003827 -113779645 + L1MC/D LINE L1 5159 5800 -533 752 163 0 68 chr11 35003843 35003990 -113779482 - FRAM SINE Alu -20 156 20 382 167 0 0 chr11 35003990 35004056 -113779416 - L1MA7 LINE L1 -336 5955 5890 1491 247 77 68 chr11 35004082 35004668 -113778804 - MLT1E LTR MaLR 0 593 3 2224 131 0 0 chr11 35004756 35005062 -113778410 + AluSx SINE Alu 1 306 -6 1028 264 60 46 chr11 35005333 35005584 -113777888 - HAL1 LINE L1 -851 1656 1410 1362 191 103 15 chr11 35005584 35005856 -113777616 + AluJb SINE Alu 3 298 -14 1762 149 3 63 chr11 35005857 35006173 -113777299 + AluJb SINE Alu 1 297 -15 1028 264 60 46 chr11 35006173 35006400 -113777072 - HAL1 LINE L1 -1096 1411 1169 1178 210 52 38 chr11 35006408 35006751 -113776721 - MER87 LTR ERV1 0 541 194 378 224 48 54 chr11 35007024 35007171 -113776301 - MER87-int LTR ERV1 -617 7503 7358 1012 130 0 0 chr11 35007449 35007587 -113775885 - MER49 LTR ERV1 -171 752 615 * 1420 141 83 40 chr11 35007571 35007847 -113775625 - MER49 LTR ERV1 -633 290 3 1788 147 14 5 chr11 35007857 35008154 -113775318 - MER49-int LTR ERV1 -9 7093 6447 1133 185 11 63 chr11 35008234 35008317 -113775155 - MER87-int LTR ERV1 -2237 4026 3940 1855 156 7 16 chr11 35008317 35008624 -113774848 - AluJb SINE Alu -8 304 1 1133 185 11 63 chr11 35008624 35008691 -113774781 - MER87-int LTR ERV1 -2323 3940 3871 2185 120 20 0 chr11 35008691 35008992 -113774480 - AluSx SINE Alu -5 307 1 1133 185 11 63 chr11 35008992 35009181 -113774291 - MER87-int LTR ERV1 -2392 3871 2469 1855 186 66 73 chr11 35009219 35009562 -113773910 - MER87-int LTR ERV1 -2862 3736 3392 2398 87 0 3 chr11 35009562 35009861 -113773611 + AluSq SINE Alu 1 298 -15 1855 186 66 73 chr11 35009861 35010176 -113773296 - MER87-int LTR ERV1 -3206 3392 3081 1755 60 0 5 chr11 35010176 35010392 -113773080 - AluY SINE Alu -17 294 80 2161 113 0 7 chr11 35010411 35010702 -113772770 + AluSx SINE Alu 11 299 -13 11506 169 21 23 chr11 35010702 35012719 -113770753 + L1PA14 LINE L1 3294 5303 -858 2426 101 0 0 chr11 35012719 35013025 -113770447 + AluSg SINE Alu 1 306 -4 11506 169 21 23 chr11 35013025 35013871 -113769601 + L1PA14 LINE L1 5303 6149 -12 227 30 0 30 chr11 35013882 35013915 -113769557 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 2345 97 0 0 chr11 35014038 35014338 -113769134 - AluSq SINE Alu -13 300 1 27 0 0 26 chr11 35014346 35014366 -113769106 + AT_rich Low_complexity Low_complexity 1 21 -16 2365 103 0 0 chr11 35014366 35014668 -113768804 + AluSg SINE Alu 1 302 -8 27 0 0 26 chr11 35014668 35014685 -113768787 + AT_rich Low_complexity Low_complexity 21 37 0 2422 84 0 0 chr11 35014685 35015002 -113768470 + AluSx SINE Alu 1 317 0 1679 248 34 19 chr11 35015099 35015515 -113767957 - MER87-int LTR ERV1 -1364 422 1 371 263 51 29 chr11 35015516 35015653 -113767819 - MER87 LTR ERV1 0 541 402 2045 109 3 33 chr11 35015675 35015977 -113767495 - AluSx SINE Alu -19 293 1 1832 243 100 53 chr11 35015978 35016452 -113767020 - L1M4 LINE L1 -1081 5065 4615 2097 132 0 0 chr11 35016452 35016761 -113766711 - AluSx SINE Alu 0 309 1 1832 243 100 53 chr11 35016761 35016938 -113766534 - L1M4 LINE L1 -1531 4615 4448 2538 183 34 28 chr11 35016938 35017407 -113766065 + L1MB7 LINE L1 5628 6102 -82 2174 109 0 7 chr11 35017407 35017700 -113765772 + AluSg SINE Alu 1 291 -19 2538 183 34 28 chr11 35017700 35017765 -113765707 + L1MB7 LINE L1 6102 6165 -19 1832 243 100 53 chr11 35017765 35017871 -113765601 - L1M4 LINE L1 -1698 4448 4270 1545 213 167 0 chr11 35017871 35018200 -113765272 + MSTD LTR MaLR 1 384 -12 3759 223 88 47 chr11 35018213 35019311 -113764161 + MSTD-int LTR MaLR 2 1144 -591 990 167 63 45 chr11 35019308 35019453 -113764019 + MSTD-int LTR MaLR 1510 1662 -73 * 2634 50 0 3 chr11 35019453 35019756 -113763716 + AluY SINE Alu 1 302 -9 990 167 63 45 chr11 35019756 35019832 -113763640 + MSTD-int LTR MaLR 1662 1735 0 2051 188 10 42 chr11 35019832 35020241 -113763231 + MSTD LTR MaLR 1 396 0 530 226 16 0 chr11 35020279 35020403 -113763069 - L1M4 LINE L1 -1924 4222 4097 346 189 162 18 chr11 35020400 35020511 -113762961 + L1MC4 LINE L1 7914 8040 -2 * 984 211 54 5 chr11 35020536 35020759 -113762713 - MIR SINE MIR -28 234 1 1695 168 3 44 chr11 35021146 35021467 -113762005 - AluJb SINE Alu 0 309 1 2448 89 3 0 chr11 35021533 35021836 -113761636 - AluSg SINE Alu -6 304 1 553 251 80 84 chr11 35021904 35022007 -113761465 + L1ME LINE L1 5513 5615 -506 624 197 8 0 chr11 35022007 35022129 -113761343 + FLAM_C SINE Alu 3 125 -8 553 251 80 84 chr11 35022129 35022312 -113761160 + L1ME LINE L1 5615 5798 -323 1475 83 0 0 chr11 35022419 35022599 -113760873 - AluSp SINE Alu 0 313 134 2009 73 94 14 chr11 35022599 35022874 -113760598 - AluSx SINE Alu -15 297 1 1950 157 3 0 chr11 35023119 35023419 -113760053 + AluJo SINE Alu 3 303 -9 496 299 83 69 chr11 35023677 35023965 -113759507 - LTR16C LTR ERVL -13 478 187 932 219 136 12 chr11 35024042 35024293 -113759179 + AluJo SINE Alu 1 282 -30 195 129 0 0 chr11 35024294 35024325 -113759147 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2224 114 10 3 chr11 35024327 35024633 -113758839 - AluSx SINE Alu 0 312 5 2247 120 0 7 chr11 35024647 35024956 -113758516 - AluSx SINE Alu -3 309 3 2277 96 3 3 chr11 35024986 35025278 -113758194 + AluSc SINE Alu 1 292 -17 207 0 0 0 chr11 35025288 35025311 -113758161 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1586 155 64 34 chr11 35025311 35025607 -113757865 + AluJo SINE Alu 1 305 -7 1730 168 3 22 chr11 35025607 35025923 -113757549 + AluJo SINE Alu 1 310 -2 1877 112 176 32 chr11 35026511 35026580 -113756892 - MSTA LTR MaLR 0 428 370 2390 92 0 0 chr11 35026580 35026872 -113756600 + AluSg SINE Alu 1 292 -18 1877 112 176 32 chr11 35026872 35027176 -113756296 - MSTA LTR MaLR -58 370 1 1597 109 9 0 chr11 35027205 35027416 -113756056 + AluSg/x SINE Alu 84 296 -14 278 49 0 24 chr11 35027769 35027810 -113755662 + (TG)n Simple_repeat Simple_repeat 2 41 0 364 138 0 0 chr11 35028000 35028058 -113755414 + L1MC4 LINE L1 6974 7031 -1011 2744 209 97 4 chr11 35028062 35028607 -113754865 - MER77 LTR ERV1 -3 602 7 264 170 0 0 chr11 35028608 35028661 -113754811 + L1MC4 LINE L1 7027 7079 -963 2627 129 12 15 chr11 35028665 35028887 -113754585 + MER57A LTR ERV1 1 223 -180 2083 142 134 8 chr11 35028887 35029267 -113754205 - MSTA LTR MaLR 0 428 1 2627 129 12 15 chr11 35029267 35029448 -113754024 + MER57A LTR ERV1 223 403 0 303 195 61 24 chr11 35029448 35029530 -113753942 + L1MC4 LINE L1 7092 7176 -866 730 188 45 8 chr11 35029548 35029681 -113753791 + MLT1C LTR MaLR 327 464 -3 * 3967 145 33 34 chr11 35029680 35030431 -113753041 + LTR1B LTR ERV1 1 772 -13 474 206 41 41 chr11 35030452 35030490 -113752982 + L1MC4a LINE L1 7141 7178 -630 2331 92 3 0 chr11 35030490 35030785 -113752687 - AluSq SINE Alu -17 296 1 474 206 41 41 chr11 35030785 35030892 -113752580 + L1MC4a LINE L1 7177 7286 -522 1715 164 20 0 chr11 35030947 35031246 -113752226 - AluJb SINE Alu -7 305 1 392 280 63 26 chr11 35031253 35031442 -113752030 + MIR SINE MIR 67 262 0 768 200 0 14 chr11 35031918 35032063 -113751409 - FRAM SINE Alu -8 168 26 3080 130 148 96 chr11 35032063 35033308 -113750164 - pTR5 LTR ERV1 -1 1522 6 258 139 51 0 chr11 35033308 35033353 -113750119 - AluSc SINE Alu -135 164 125 184 303 121 10 chr11 35033691 35033790 -113749682 + MIR3 SINE MIR 48 157 -51 353 401 32 6 chr11 35033936 35034093 -113749379 + L2 LINE L2 3112 3272 0 2370 82 0 3 chr11 35034122 35034415 -113749057 + AluY SINE Alu 1 292 -19 671 132 0 9 chr11 35034594 35034700 -113748772 + FLAM_C SINE Alu 29 133 -10 2254 77 10 7 chr11 35034848 35035145 -113748327 + AluSx SINE Alu 5 302 -10 497 60 0 0 chr11 35035327 35035394 -113748078 + L1MA7 LINE L1 6222 6288 -3 213 39 0 0 chr11 35037427 35037453 -113746019 + (CCG)n Simple_repeat Simple_repeat 3 28 0 21 0 0 0 chr11 35037502 35037523 -113745949 + GC_rich Low_complexity Low_complexity 1 21 0 189 180 0 0 chr11 35037593 35037643 -113745829 + C-rich Low_complexity Low_complexity 3 52 0 232 133 33 0 chr11 35037744 35037804 -113745668 + (CCG)n Simple_repeat Simple_repeat 3 64 0 237 139 0 0 chr11 35037858 35037901 -113745571 + (CAG)n Simple_repeat Simple_repeat 1 43 0 1641 116 0 107 chr11 35040930 35041272 -113742200 - AluSp SINE Alu 0 308 1 685 311 5 19 chr11 35041713 35041919 -113741553 - MIR SINE MIR -58 204 2 909 316 131 33 chr11 35042025 35042744 -113740728 + L2 LINE L2 1968 2756 -558 1818 144 0 18 chr11 35042782 35043066 -113740406 + AluJb SINE Alu 1 279 -33 432 0 0 0 chr11 35043066 35043114 -113740358 + (CA)n Simple_repeat Simple_repeat 1 48 0 1596 157 104 7 chr11 35043156 35043436 -113740036 - AluJo SINE Alu 0 312 6 185 184 82 20 chr11 35044056 35044105 -113739367 - L2 LINE L2 -1 3271 3220 1602 280 153 48 chr11 35044312 35044863 -113738609 + L2 LINE L2 2092 2584 -729 2127 130 10 0 chr11 35044863 35045155 -113738317 + AluSx SINE Alu 1 295 -17 1602 280 153 48 chr11 35045155 35045655 -113737817 + L2 LINE L2 2584 3277 -36 760 253 129 5 chr11 35045633 35045835 -113737637 + MIR SINE MIR 7 233 -29 * 204 299 75 0 chr11 35045855 35045922 -113737550 + L2 LINE L2 3241 3312 -1 349 219 31 23 chr11 35046103 35046219 -113737253 - MLT1H LTR MaLR -308 241 97 1918 144 7 3 chr11 35046385 35046684 -113736788 + AluJb SINE Alu 1 300 -12 231 229 0 42 chr11 35046686 35046734 -113736738 - L2 LINE L2 -85 3228 3183 259 215 13 63 chr11 35046766 35046845 -113736627 - L2 LINE L2 -335 2978 2904 981 174 6 0 chr11 35046878 35047045 -113736427 - MER5A DNA MER1_type -21 168 1 270 324 144 0 chr11 35047062 35047201 -113736271 + L2 LINE L2 2990 3148 -165 1017 249 21 4 chr11 35047335 35047572 -113735900 - MIR SINE MIR -14 248 8 343 272 134 38 chr11 35047855 35048116 -113735356 - L2 LINE L2 -27 3286 3001 1923 119 11 21 chr11 35048177 35048495 -113734977 - AluSx SINE Alu 0 315 1 2202 113 3 16 chr11 35048763 35049073 -113734399 - AluSg SINE Alu -4 306 1 180 0 0 0 chr11 35049185 35049205 -113734267 + (T)n Simple_repeat Simple_repeat 1 20 0 537 276 235 22 chr11 35049238 35049596 -113733876 + L2 LINE L2 2880 3313 0 1546 138 40 92 chr11 35050688 35050724 -113732748 - AluJo SINE Alu -2 310 274 2161 103 3 3 chr11 35050724 35051006 -113732466 + AluSq SINE Alu 1 282 -31 1546 138 40 92 chr11 35051006 35051296 -113732176 - AluJo SINE Alu -38 274 1 464 228 46 63 chr11 35051315 35051552 -113731920 - L1MC5 LINE L1 -50 7911 7679 1789 151 10 26 chr11 35052399 35052710 -113730762 + AluJo SINE Alu 1 306 -6 1298 160 89 44 chr11 35053193 35053461 -113730011 - L1M4 LINE L1 -370 5814 5526 2071 141 3 0 chr11 35053461 35053758 -113729714 + AluSx SINE Alu 1 298 -14 1298 160 89 44 chr11 35053758 35053827 -113729645 - L1M4 LINE L1 -658 5526 5462 2223 110 0 7 chr11 35054026 35054325 -113729147 - AluSq SINE Alu -16 297 1 436 272 215 38 chr11 35054514 35055033 -113728439 + L2 LINE L2 2702 3313 0 1196 111 0 32 chr11 35055825 35056014 -113727458 + L1PA8A LINE L1 5949 6131 0 1700 161 60 35 chr11 35056072 35056438 -113727034 + THE1C LTR MaLR 1 375 0 349 323 51 28 chr11 35056609 35056826 -113726646 + L2 LINE L2 2136 2357 -957 208 333 34 51 chr11 35057088 35057205 -113726267 + MER5B DNA MER1_type 63 177 -1 1723 181 0 14 chr11 35057210 35057502 -113725970 + AluJo SINE Alu 1 288 -24 197 359 20 56 chr11 35057683 35057763 -113725709 + L2 LINE L2 2927 3008 -264 2514 73 0 10 chr11 35057763 35058076 -113725396 - AluY SINE Alu -1 310 1 197 359 20 56 chr11 35058076 35058190 -113725282 + L2 LINE L2 3008 3114 -158 497 255 39 97 chr11 35058238 35058497 -113724975 - MIR SINE MIR 0 262 19 1697 157 51 3 chr11 35059497 35059791 -113723681 - AluJo SINE Alu -4 308 1 24 0 0 0 chr11 35059808 35059832 -113723640 + AT_rich Low_complexity Low_complexity 1 24 0 2158 78 60 0 chr11 35060500 35060784 -113722688 - AluSp SINE Alu -12 301 1 2561 162 49 38 chr11 35060798 35061036 -113722436 - L1MB7 LINE L1 -16 6168 5934 1786 171 58 0 chr11 35061036 35061363 -113722109 - MER7A DNA MER2_type -1 345 2 2366 73 0 26 chr11 35061366 35061669 -113721803 - AluSx SINE Alu -17 295 1 2561 162 49 38 chr11 35061669 35062000 -113721472 - L1MB7 LINE L1 -251 5933 5589 2309 109 13 0 chr11 35062126 35062429 -113721043 + AluSx SINE Alu 1 307 -5 222 309 0 29 chr11 35062630 35062698 -113720774 + L2 LINE L2 3193 3258 -14 787 265 115 30 chr11 35062757 35063306 -113720166 - L2 LINE L2 -15 3298 2627 944 145 78 0 chr11 35063472 35063651 -113719821 - L1MC2 LINE L1 -15 6329 6137 745 179 174 30 chr11 35063744 35063945 -113719527 - AluJo SINE Alu -18 294 65 3943 151 49 36 chr11 35063955 35064777 -113718695 - L1MC3 LINE L1 -317 7468 6637 4221 174 45 13 chr11 35064908 35066115 -113717357 + L1MB7 LINE L1 4940 6184 0 2547 204 113 22 chr11 35066110 35067011 -113716461 + L1ME1 LINE L1 4375 5357 -789 * 2023 198 105 54 chr11 35067028 35067064 -113716408 + L1ME1 LINE L1 5434 5467 -699 2316 116 0 0 chr11 35067064 35067367 -113716105 - AluSx SINE Alu -9 303 1 2023 198 105 54 chr11 35067367 35067974 -113715498 + L1ME1 LINE L1 5467 6042 -124 2241 98 0 17 chr11 35067974 35068269 -113715203 + AluSx SINE Alu 1 290 -22 2211 83 3 14 chr11 35068269 35068558 -113714914 + AluSc SINE Alu 1 286 -23 2023 198 105 54 chr11 35068558 35068598 -113714874 + L1ME1 LINE L1 6041 6154 -12 979 216 28 85 chr11 35068616 35068862 -113714610 + L1ME LINE L1 4938 5197 -965 1743 173 26 16 chr11 35068862 35069168 -113714304 + AluJb SINE Alu 1 309 -3 979 216 28 85 chr11 35069168 35069318 -113714154 + L1ME LINE L1 5197 5354 -808 3095 140 36 4 chr11 35069318 35069841 -113713631 - L1PA16 LINE L1 -3 6163 5624 979 216 28 85 chr11 35069841 35070073 -113713399 + L1ME LINE L1 5354 5539 -623 2021 140 0 3 chr11 35070075 35070400 -113713072 - AluSx SINE Alu 0 324 1 368 221 53 21 chr11 35070423 35070518 -113712954 + L1MC4a LINE L1 7270 7367 -441 943 142 28 0 chr11 35070519 35070660 -113712812 + FRAM SINE Alu 1 145 -31 226 250 16 0 chr11 35070665 35070729 -113712743 + L1MC4 LINE L1 7508 7572 -470 430 243 133 39 chr11 35070844 35071153 -113712319 + L1MC4 LINE L1 7705 8042 0 234 418 37 11 chr11 35071285 35071474 -113711998 - MIR3 SINE MIR -12 196 3 2210 104 0 3 chr11 35071980 35072279 -113711193 - AluSg SINE Alu -12 298 1 27 0 0 0 chr11 35072302 35072329 -113711143 + AT_rich Low_complexity Low_complexity 1 27 0 21 57 0 0 chr11 35072469 35072504 -113710968 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr11 35073459 35073480 -113709992 + AT_rich Low_complexity Low_complexity 1 21 0 1972 113 0 8 chr11 35073681 35073947 -113709525 - AluSg SINE Alu -9 301 38 386 281 21 0 chr11 35074805 35074901 -113708571 + MIR3 SINE MIR 87 184 -24 289 297 117 9 chr11 35075227 35075449 -113708023 - L1MC/D LINE L1 -2005 5803 5558 1511 164 124 7 chr11 35075872 35076146 -113707326 + AluJo SINE Alu 3 308 -4 3320 32 17 0 chr11 35080616 35081023 -113702449 - L1PA4 LINE L1 -1 6154 5741 440 297 90 7 chr11 35081154 35081299 -113702173 - MIR SINE MIR -86 176 20 188 347 55 40 chr11 35081762 35081844 -113701628 + L2 LINE L2 2553 2632 -682 1968 161 0 16 chr11 35081844 35082160 -113701312 - AluJo SINE Alu -1 311 1 188 347 55 40 chr11 35082160 35082276 -113701196 + L2 LINE L2 2632 2754 -560 213 240 227 87 chr11 35082660 35082810 -113700662 + MIR SINE MIR 15 185 -77 308 253 22 65 chr11 35084041 35084277 -113699195 - L1ME LINE L1 -5426 657 446 247 265 12 24 chr11 35084394 35084477 -113698995 - L1ME LINE L1 -5669 401 320 198 0 0 0 chr11 35084521 35084543 -113698929 + (T)n Simple_repeat Simple_repeat 1 22 0 324 311 68 26 chr11 35084930 35085120 -113698352 - L1 LINE L1 -2343 3803 3606 290 261 124 40 chr11 35085221 35085745 -113697727 - L1 LINE L1 -2703 3443 2876 233 29 0 29 chr11 35085786 35085821 -113697651 + (TTA)n Simple_repeat Simple_repeat 3 36 0 41212 33 21 0 chr11 35085821 35091827 -113691645 - L1PA3 LINE L1 -18 6137 1 334 247 138 35 chr11 35092061 35092235 -113691237 + L1MC5 LINE L1 7734 7925 -36 371 283 190 12 chr11 35092237 35092495 -113690977 - L1 LINE L1 -3531 2615 2312 309 304 33 22 chr11 35092694 35092875 -113690597 + L1M4 LINE L1 2872 3054 -3092 1086 184 0 23 chr11 35093000 35093218 -113690254 + AluJo SINE Alu 87 299 -13 324 230 65 50 chr11 35093337 35093476 -113689996 - L1MC5 LINE L1 -50 7911 7771 819 229 192 22 chr11 35093827 35094281 -113689191 + Charlie2 DNA MER1_type 1988 2518 -344 2199 114 3 0 chr11 35094666 35094964 -113688508 - AluSx SINE Alu -13 299 1 2637 200 133 3 chr11 35095111 35095752 -113687720 - L1MB8 LINE L1 0 6178 5455 4655 219 121 19 chr11 35095759 35096409 -113687063 - L1MB8 LINE L1 -1247 4899 4316 2341 87 0 7 chr11 35096409 35096709 -113686763 - AluSq SINE Alu -13 300 3 4655 219 121 19 chr11 35096709 35097373 -113686099 - L1MB8 LINE L1 -1830 4316 3422 2218 101 14 0 chr11 35097373 35097670 -113685802 - AluSg SINE Alu -9 301 1 4655 219 121 19 chr11 35097670 35097804 -113685668 - L1MB8 LINE L1 -2724 3422 3303 1004 181 9 8 chr11 35097915 35098145 -113685327 - AluJo SINE Alu -4 308 1 184 222 79 48 chr11 35098502 35098565 -113684907 - L3 LINE CR1 -686 891 827 21 57 0 0 chr11 35099060 35099095 -113684377 + AT_rich Low_complexity Low_complexity 1 35 0 760 134 0 25 chr11 35099253 35099372 -113684100 - AluJo SINE Alu -179 133 18 547 298 10 62 chr11 35099606 35099814 -113683658 + L3 LINE CR1 1375 1571 -6 32 67 0 0 chr11 35101025 35101085 -113682387 + AT_rich Low_complexity Low_complexity 1 60 0 1852 157 39 0 chr11 35101353 35101634 -113681838 - AluJb SINE Alu -20 292 1 2454 78 3 0 chr11 35101699 35102005 -113681467 - AluSx SINE Alu 0 312 6 197 239 45 60 chr11 35102893 35102960 -113680512 + MIR3 SINE MIR 122 187 -21 1829 154 21 0 chr11 35102962 35103247 -113680225 - AluJo SINE Alu -17 295 5 22 35 0 0 chr11 35103320 35103349 -113680123 + AT_rich Low_complexity Low_complexity 1 29 0 674 156 39 0 chr11 35103482 35103610 -113679862 - Charlie1a DNA MER1_type -5 1450 1318 914 215 72 5 chr11 35103687 35103896 -113679576 + MER58A DNA MER1_type 1 223 -1 1957 148 3 16 chr11 35104331 35104634 -113678838 - AluJb SINE Alu -11 301 3 649 221 0 0 chr11 35104668 35104790 -113678682 + FLAM_A SINE Alu 3 124 -9 2238 108 0 10 chr11 35104844 35105149 -113678323 + AluSq SINE Alu 1 302 -11 938 193 171 53 chr11 35105467 35106010 -113677462 - Charlie1a DNA MER1_type -2 1453 778 4240 145 42 61 chr11 35106039 35107215 -113676257 - L1MB4 LINE L1 -8 6172 5015 2232 196 29 22 chr11 35107222 35107712 -113675760 - Charlie1a DNA MER1_type -686 769 277 1184 140 82 14 chr11 35107718 35107925 -113675547 - AluJb SINE Alu -5 307 87 2147 96 14 3 chr11 35107928 35108220 -113675252 - AluSg SINE Alu -15 295 1 1544 199 7 14 chr11 35108259 35108536 -113674936 - AluJo SINE Alu -37 275 1 1556 191 18 18 chr11 35108562 35108844 -113674628 - AluJo SINE Alu -30 282 1 846 200 65 88 chr11 35108847 35109107 -113674365 - Charlie1a DNA MER1_type -1174 281 28 811 168 15 0 chr11 35109153 35109284 -113674188 + FLAM_C SINE Alu 1 133 0 261 0 0 0 chr11 35109288 35109317 -113674155 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 441 81 0 0 chr11 35109316 35109378 -113674094 + (CA)n Simple_repeat Simple_repeat 2 63 0 841 152 16 0 chr11 35109474 35109599 -113673873 - FLAM_A SINE Alu -6 127 1 1697 181 0 13 chr11 35109676 35109986 -113673486 - AluJo SINE Alu -3 309 4 2184 96 21 0 chr11 35110239 35110519 -113672953 + AluSq SINE Alu 1 286 -27 486 0 0 0 chr11 35110519 35110573 -113672899 + (CA)n Simple_repeat Simple_repeat 2 55 0 223 226 30 167 chr11 35110573 35110741 -113672731 - MER5B DNA MER1_type -29 149 5 545 204 8 57 chr11 35111469 35111579 -113671893 - L1PB3 LINE L1 -513 5641 5534 3364 95 65 0 chr11 35111579 35112064 -113671408 + L1PB3 LINE L1 5623 6147 -7 545 204 8 57 chr11 35112064 35112082 -113671390 - L1P2 LINE L1 -620 5534 5517 609 186 0 0 chr11 35112094 35112191 -113671281 - MER7A DNA MER2_type -250 96 2 414 268 159 13 chr11 35112222 35112395 -113671077 - MIR3 SINE MIR -59 203 7 303 333 170 20 chr11 35112436 35112583 -113670889 - MIR3 SINE MIR -24 184 16 2239 128 0 0 chr11 35114259 35114571 -113668901 - AluSx SINE Alu 0 312 1 338 118 147 29 chr11 35114589 35114657 -113668815 - LTR49 LTR ERV1 -77 567 459 339 200 15 0 chr11 35114859 35114924 -113668548 + Charlie1 DNA MER1_type 1498 1563 -1198 205 320 0 0 chr11 35114932 35114982 -113668490 - MIR SINE MIR -129 79 30 1977 156 0 3 chr11 35114984 35115292 -113668180 - AluSx SINE Alu -5 307 1 1740 100 141 0 chr11 35115533 35115802 -113667670 - AluSx SINE Alu -5 307 1 2509 54 0 0 chr11 35116374 35116670 -113666802 + AluY SINE Alu 6 301 -10 2033 145 0 0 chr11 35116994 35117319 -113666153 - AluSx SINE Alu 0 325 1 292 262 12 46 chr11 35117673 35117781 -113665691 - MLT1H LTR MaLR -402 147 15 181 239 65 0 chr11 35118314 35118360 -113665112 + L2 LINE L2 3216 3264 -8 477 140 86 9 chr11 35118426 35118543 -113664929 - L1MA8 LINE L1 -23 6268 6152 248 184 41 0 chr11 35118650 35118699 -113664773 + L1ME LINE L1 5543 5593 -528 1801 155 13 30 chr11 35118722 35119025 -113664447 + AluJo SINE Alu 1 298 -14 494 262 40 16 chr11 35119191 35119317 -113664155 - L2 LINE L2 -1 3312 3184 23 33 0 0 chr11 35119648 35119678 -113663794 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr11 35123059 35123080 -113660392 + AT_rich Low_complexity Low_complexity 1 21 0 1768 116 153 0 chr11 35123462 35123763 -113659709 - MER7A DNA MER2_type 0 346 2 24 0 0 0 chr11 35123929 35123953 -113659519 + AT_rich Low_complexity Low_complexity 1 24 0 2148 109 7 0 chr11 35125146 35125429 -113658043 + AluSc SINE Alu 5 289 -20 1639 145 119 0 chr11 35125984 35126253 -113657219 - AluSx SINE Alu -11 301 1 1784 136 11 0 chr11 35126500 35126773 -113656699 - AluJb SINE Alu -36 276 1 1888 170 0 3 chr11 35127477 35127788 -113655684 - AluJo SINE Alu -2 310 1 383 374 59 20 chr11 35127810 35128013 -113655459 + L2 LINE L2 3061 3271 -1 630 111 130 0 chr11 35128323 35128431 -113655041 + FRAM SINE Alu 36 157 -19 264 277 125 49 chr11 35128553 35128737 -113654735 + MIR3 SINE MIR 5 202 -6 2345 97 0 0 chr11 35129177 35129486 -113653986 - AluSc SINE Alu 0 309 1 1645 158 79 4 chr11 35130077 35130355 -113653117 + AluJo SINE Alu 7 305 -7 1278 180 137 49 chr11 35130408 35130683 -113652789 - MLT1A2 LTR MaLR 0 374 124 1929 144 0 0 chr11 35130683 35130968 -113652504 + AluSx SINE Alu 1 285 -27 264 91 0 0 chr11 35130968 35131012 -113652460 + (CATA)n Simple_repeat Simple_repeat 2 45 0 1278 180 137 49 chr11 35131012 35131079 -113652393 - MLT1A2 LTR MaLR -249 125 1 572 291 116 12 chr11 35131324 35131582 -113651890 + L2 LINE L2 2510 2794 -520 522 227 60 7 chr11 35131583 35131733 -113651739 + L1MEc LINE L1 37 194 -6202 465 165 110 0 chr11 35131722 35131831 -113651641 + L1M LINE L1 5281 5401 -890 * 2014 113 40 0 chr11 35131832 35132106 -113651366 + AluSx SINE Alu 1 285 -27 207 0 0 0 chr11 35132106 35132129 -113651343 + (CA)n Simple_repeat Simple_repeat 2 24 0 2054 139 3 7 chr11 35132139 35132448 -113651024 - AluSx SINE Alu -2 310 3 1781 126 8 129 chr11 35132506 35132887 -113650585 + MER1B DNA MER1_type 3 337 0 2024 187 87 24 chr11 35132982 35133443 -113650029 - LTR2B LTR ERV1 0 490 1 3987 181 26 53 chr11 35133443 35134268 -113649204 + L1MB2 LINE L1 4735 5500 -671 718 157 0 79 chr11 35134268 35134408 -113649064 + FLAM_C SINE Alu 5 133 0 3987 181 26 53 chr11 35134408 35135019 -113648453 + L1MB2 LINE L1 5500 6126 -45 959 184 5 53 chr11 35135023 35135282 -113648190 + AluJo SINE Alu 85 333 0 2259 102 17 0 chr11 35135721 35136016 -113647456 - AluSg SINE Alu -10 300 1 1079 220 20 52 chr11 35136567 35136859 -113646613 - L1MDa LINE L1 -3867 2777 2511 1544 190 7 37 chr11 35136859 35137154 -113646318 - AluJo SINE Alu -26 286 1 1079 220 20 52 chr11 35137154 35137365 -113646107 - L1MDa LINE L1 -4133 2511 2295 668 212 0 0 chr11 35137471 35137589 -113645883 - FLAM_A SINE Alu -15 127 10 3782 211 55 24 chr11 35137602 35137658 -113645814 - L1MDa LINE L1 -4897 1645 1592 1571 179 80 54 chr11 35137658 35138044 -113645428 - MSTD LTR MaLR 0 396 1 3782 211 55 24 chr11 35138044 35138320 -113645152 - L1MDa LINE L1 -4950 1592 1326 2248 111 7 0 chr11 35138320 35138617 -113644855 - AluSx SINE Alu -13 299 1 3782 211 55 24 chr11 35138617 35139289 -113644183 - L1MDa LINE L1 -5216 1326 609 1543 165 22 11 chr11 35139296 35139586 -113643886 - AluJo SINE Alu 0 304 12 17942 160 55 27 chr11 35139595 35142475 -113640997 - L1PA11 LINE L1 0 7612 4814 2286 80 0 27 chr11 35142475 35142774 -113640698 - AluSc SINE Alu -18 291 1 17942 160 55 27 chr11 35142774 35143796 -113639676 - L1PA11 LINE L1 -2798 4814 3822 1989 70 114 7 chr11 35143796 35144068 -113639404 - AluY SINE Alu -10 301 1 17942 160 55 27 chr11 35144068 35144105 -113639367 - L1PA11 LINE L1 -3790 3822 3788 1071 124 0 0 chr11 35144105 35144250 -113639222 - AluSg/x SINE Alu -34 276 132 17942 160 55 27 chr11 35144250 35146763 -113636709 - L1PA11 LINE L1 -3824 3788 4 499 183 10 29 chr11 35146772 35146876 -113636596 - L1MDa LINE L1 -5944 598 497 945 214 62 5 chr11 35146930 35147154 -113636318 - L1M4 LINE L1 -6290 252 16 234 0 0 0 chr11 35147231 35147257 -113636215 + (CA)n Simple_repeat Simple_repeat 2 27 0 27 0 0 0 chr11 35147588 35147615 -113635857 + AT_rich Low_complexity Low_complexity 1 27 0 2213 118 3 0 chr11 35147834 35148139 -113635333 - AluSc SINE Alu -3 306 1 237 269 32 54 chr11 35148286 35148379 -113635093 - MIR SINE MIR -88 120 30 1130 168 92 65 chr11 35148387 35148679 -113634793 - L1MDa LINE L1 -6224 420 121 229 273 0 18 chr11 35148745 35148821 -113634651 + polypyrimidine Low_complexity Low_complexity 1 74 0 574 156 0 0 chr11 35148827 35148917 -113634555 - HY4 scRNA scRNA -3 90 1 352 157 14 14 chr11 35148921 35148991 -113634481 + MER69 DNA AcHobo 2457 2526 0 236 220 0 0 chr11 35148991 35149041 -113634431 + L2 LINE L2 3264 3313 0 182 304 22 0 chr11 35149395 35149441 -113634031 - MER5B DNA MER1_type 0 178 132 868 254 61 96 chr11 35150353 35150830 -113632642 - L2 LINE L2 -1 3312 2853 1101 190 56 0 chr11 35150882 35151098 -113632374 - AluJb SINE Alu -4 308 81 1647 231 97 28 chr11 35151100 35151564 -113631908 - L2 LINE L2 -600 2714 2219 1250 157 10 0 chr11 35151577 35151775 -113631697 - AluJb SINE Alu -28 284 85 701 196 30 0 chr11 35151777 35151910 -113631562 - AluJb SINE Alu -173 139 3 649 250 114 11 chr11 35151912 35152096 -113631376 - L2 LINE L2 -1100 2214 2012 417 167 11 33 chr11 35152143 35152233 -113631239 - AluJ/FRAM SINE Alu -5 307 220 1720 202 7 0 chr11 35152293 35152600 -113630872 - AluSx SINE Alu -3 309 1 1580 172 20 30 chr11 35152635 35152931 -113630541 + AluJo SINE Alu 1 293 -19 351 293 23 30 chr11 35153678 35153811 -113629661 - L2 LINE L2 0 3313 3182 1960 125 57 0 chr11 35153938 35154217 -113629255 + AluSg SINE Alu 1 295 -15 1533 150 73 42 chr11 35154226 35154513 -113628959 + AluJb SINE Alu 1 296 -16 1538 164 47 47 chr11 35154519 35154818 -113628654 + AluJo SINE Alu 1 299 -13 217 243 57 43 chr11 35154863 35154933 -113628539 + MER5A DNA MER1_type 69 139 -50 1125 170 0 65 chr11 35155223 35155452 -113628020 + AluJb SINE Alu 87 300 -12 2253 115 3 6 chr11 35155778 35156090 -113627382 - AluSx SINE Alu -1 311 1 1962 151 0 10 chr11 35156676 35156981 -113626491 - AluJb SINE Alu -2 310 9 2225 108 3 3 chr11 35157180 35157476 -113625996 - AluSp SINE Alu -16 297 2 5790 40 0 1 chr11 35157517 35158212 -113625260 + L1PA5 LINE L1 5455 6148 -6 2025 113 17 7 chr11 35158801 35159094 -113624378 - AluSg SINE Alu -14 296 1 195 184 0 0 chr11 35159691 35159729 -113623743 + (TTA)n Simple_repeat Simple_repeat 3 40 0 351 253 30 84 chr11 35159738 35159904 -113623568 - MIR SINE MIR -18 244 88 2404 75 3 0 chr11 35159919 35160226 -113623246 - AluSx SINE Alu -4 308 1 202 197 30 30 chr11 35160623 35160689 -113622783 + (CGGGG)n Simple_repeat Simple_repeat 4 69 0 863 116 106 40 chr11 35163262 35163461 -113620011 - L1MC3 LINE L1 -120 7665 7454 285 347 10 30 chr11 35163559 35163675 -113619797 - MIR SINE MIR -92 116 9 925 125 190 0 chr11 35163740 35163924 -113619548 - MER20 DNA MER1_type 0 219 1 2124 147 0 0 chr11 35163959 35164252 -113619220 + AluSx SINE Alu 5 297 -15 814 191 13 13 chr11 35165219 35165371 -113618101 - FRAM SINE Alu -12 154 3 2338 90 3 13 chr11 35165538 35165848 -113617624 + AluSg SINE Alu 1 307 -3 343 269 218 6 chr11 35166985 35167141 -113616331 + MIR SINE MIR 72 260 -2 922 52 0 35 chr11 35167550 35167665 -113615807 + AluY SINE Alu 36 146 -165 * 1357 157 17 8 chr11 35167664 35167900 -113615572 + AluJb SINE Alu 69 306 -6 801 200 0 0 chr11 35167901 35168051 -113615421 - MER6B DNA MER2_type -60 150 1 285 184 146 0 chr11 35169373 35169476 -113613996 - L1MC4 LINE L1 0 8042 7925 1856 137 3 24 chr11 35170244 35170536 -113612936 - AluJb SINE Alu -15 297 12 451 304 39 34 chr11 35170932 35171136 -113612336 - MIR SINE MIR -56 206 2 337 178 41 0 chr11 35171554 35171627 -113611845 + L1MB7 LINE L1 6099 6174 -10 296 279 161 25 chr11 35171847 35172008 -113611464 + L2 LINE L2 2866 3048 -224 955 132 147 57 chr11 35172018 35172242 -113611230 - MER33 DNA MER1_type -2266 319 60 2273 108 0 0 chr11 35172242 35172539 -113610933 - AluSg SINE Alu -13 297 1 955 132 147 57 chr11 35172539 35172615 -113610857 - MER33 DNA MER1_type -2525 60 1 374 278 71 0 chr11 35172710 35172836 -113610636 - MIR SINE MIR -10 252 118 180 111 0 0 chr11 35173000 35173027 -113610445 + (TGGA)n Simple_repeat Simple_repeat 4 30 0 23 78 0 0 chr11 35173086 35173137 -113610335 + AT_rich Low_complexity Low_complexity 1 51 0 2242 93 0 3 chr11 35173400 35173729 -113609743 - AluSq SINE Alu 0 328 1 810 154 119 28 chr11 35173749 35173892 -113609580 - FRAM SINE Alu -23 153 1 192 236 112 56 chr11 35173942 35174031 -113609441 + MIR SINE MIR 169 262 0 2368 25 7 4 chr11 35174069 35174387 -113609085 + AluY SINE Alu 1 319 0 660 110 73 0 chr11 35175680 35175789 -113607683 - L1MB7 LINE L1 -16 6168 6052 2277 90 3 0 chr11 35175906 35176196 -113607276 - AluSg SINE Alu -19 291 1 215 329 86 0 chr11 35176298 35176368 -113607104 + L2 LINE L2 3197 3272 0 292 322 34 34 chr11 35176445 35176563 -113606909 + L2 LINE L2 3151 3268 -4 668 228 37 37 chr11 35176942 35177157 -113606315 + L1ME1 LINE L1 5934 6148 -18 261 263 0 0 chr11 35177788 35177845 -113605627 + (CATATA)n Simple_repeat Simple_repeat 4 60 0 991 166 37 0 chr11 35178430 35178593 -113604879 - AluJb SINE Alu -15 297 129 1290 158 5 0 chr11 35178604 35178806 -113604666 + AluY SINE Alu 1 203 -108 333 55 0 18 chr11 35178906 35178961 -113604511 + Alu SINE Alu 245 298 -2 901 110 0 0 chr11 35178968 35179086 -113604386 - AluJb SINE Alu -194 118 1 445 298 43 120 chr11 35179092 35179491 -113603981 - L2 LINE L2 -16 3256 2889 855 284 62 25 chr11 35179505 35179941 -113603531 + L1ME LINE L1 13 464 -5606 977 243 48 65 chr11 35180183 35180752 -113602720 + L1ME LINE L1 529 1087 -4983 26 107 0 0 chr11 35181778 35181881 -113601591 + AT_rich Low_complexity Low_complexity 1 103 0 2143 105 3 7 chr11 35182086 35182371 -113601101 + AluSx SINE Alu 13 296 -16 1520 184 48 24 chr11 35182421 35182714 -113600758 - AluJo SINE Alu -12 300 1 1205 169 75 24 chr11 35182819 35183074 -113600398 + Charlie1b DNA MER1_type 42 309 -214 1859 166 27 3 chr11 35183077 35183372 -113600100 + AluJb SINE Alu 1 302 -10 883 150 0 0 chr11 35183503 35183636 -113599836 - FLAM_C SINE Alu 0 133 1 278 132 8 0 chr11 35184314 35184373 -113599099 + L1P5 LINE L1 5600 5660 -494 * 335 40 20 0 chr11 35184366 35184416 -113599056 + L1P5 LINE L1 5556 5606 -550 23 33 0 0 chr11 35184676 35184706 -113598766 + AT_rich Low_complexity Low_complexity 1 30 0 1912 159 0 26 chr11 35184715 35185023 -113598449 + AluJo SINE Alu 1 300 -12 701 204 0 0 chr11 35185039 35185171 -113598301 + FLAM_C SINE Alu 6 137 -6 615 174 0 0 chr11 35185578 35185670 -113597802 + AluJb SINE Alu 3 94 -218 1188 156 0 29 chr11 35185713 35185918 -113597554 + AluJb SINE Alu 96 294 -18 505 306 65 90 chr11 35187439 35187762 -113595710 - L2 LINE L2 -31 3241 2927 555 250 85 30 chr11 35188098 35188298 -113595174 + MIR SINE MIR 52 262 0 687 279 67 44 chr11 35189187 35189539 -113593933 + L1MC4a LINE L1 5298 5667 -2141 2140 104 20 3 chr11 35189539 35189836 -113593636 + AluSg SINE Alu 1 302 -8 687 279 67 44 chr11 35189836 35190003 -113593469 + L1MC4a LINE L1 5667 5829 -1979 30 45 0 0 chr11 35190036 35190080 -113593392 + AT_rich Low_complexity Low_complexity 1 44 0 2263 117 0 0 chr11 35190562 35190860 -113592612 + AluSq SINE Alu 1 298 -15 324 252 109 34 chr11 35190918 35191037 -113592435 + MIR SINE MIR 88 215 -47 1909 133 7 0 chr11 35191527 35191839 -113591633 + AluSx SINE Alu 12 325 0 937 177 0 7 chr11 35191955 35192132 -113591340 + FRAM SINE Alu 1 175 0 23 0 0 0 chr11 35192236 35192259 -113591213 + AT_rich Low_complexity Low_complexity 1 23 0 894 121 0 30 chr11 35192360 35192492 -113590980 + FLAM_C SINE Alu 1 128 -5 2322 89 10 0 chr11 35193156 35193447 -113590025 + AluSq SINE Alu 1 294 -19 397 235 96 17 chr11 35194134 35194249 -113589223 - L2 LINE L2 0 3313 3190 674 184 7 52 chr11 35194371 35194507 -113588965 + AluJb SINE Alu 2 131 -181 676 192 56 18 chr11 35196028 35196228 -113587244 - MIR SINE MIR -2 260 2 345 299 104 26 chr11 35198616 35198847 -113584625 + L1ME4a LINE L1 5615 5863 -258 263 281 16 0 chr11 35199258 35199322 -113584150 + L2 LINE L2 3205 3269 -3 1907 160 3 3 chr11 35201210 35201522 -113581950 + AluJo SINE Alu 1 312 0 1183 221 120 35 chr11 35201763 35202246 -113581226 + L1MC/D LINE L1 5296 5819 -1989 249 196 0 0 chr11 35202462 35202518 -113580954 + (TA)n Simple_repeat Simple_repeat 2 57 0 464 282 110 27 chr11 35203362 35203833 -113579639 - L1MEd LINE L1 -4784 1526 981 337 320 74 29 chr11 35203952 35204127 -113579345 - L1MEd LINE L1 -5448 671 489 351 338 71 71 chr11 35204147 35204585 -113578887 - L1MEd LINE L1 -5666 453 16 1426 173 60 25 chr11 35204754 35205038 -113578434 + AluJo SINE Alu 1 294 -18 822 286 168 28 chr11 35205339 35205727 -113577745 - L2 LINE L2 -5 3308 2867 449 123 0 0 chr11 35206205 35206270 -113577202 - Alu SINE Alu -13 298 234 1991 131 0 0 chr11 35207693 35207968 -113575504 - AluSx SINE Alu -37 275 1 2096 109 11 0 chr11 35208767 35209051 -113574421 + AluSq SINE Alu 1 287 -26 1188 125 0 180 chr11 35209339 35209611 -113573861 + AluJb SINE Alu 65 287 -25 2309 51 14 20 chr11 35210141 35210435 -113573037 + AluY SINE Alu 1 292 -19 686 164 8 16 chr11 35210981 35211103 -113572369 - FLAM_C SINE Alu -12 121 1 26 50 0 0 chr11 35211417 35211457 -113572015 + AT_rich Low_complexity Low_complexity 1 40 0 1294 269 203 4 chr11 35211834 35212157 -113571315 + L1MC4 LINE L1 7191 7448 -594 1330 114 249 0 chr11 35212157 35212394 -113571078 + AluSx SINE Alu 1 296 -6 1294 269 203 4 chr11 35212394 35212779 -113570693 + L1MC4 LINE L1 7448 8040 -2 260 305 47 23 chr11 35214005 35214133 -113569339 - MER5B DNA MER1_type -42 136 6 237 250 162 0 chr11 35214162 35214230 -113569242 + MIR3 SINE MIR 121 199 -9 26 74 0 0 chr11 35214892 35214946 -113568526 + AT_rich Low_complexity Low_complexity 1 54 0 33 25 0 0 chr11 35218239 35218279 -113565193 + AT_rich Low_complexity Low_complexity 1 40 0 185 108 27 0 chr11 35218970 35219007 -113564465 + (CATA)n Simple_repeat Simple_repeat 1 38 0 296 206 0 0 chr11 35220348 35220416 -113563056 - HAL1 LINE L1 -343 2164 2097 1435 184 63 24 chr11 35220721 35221052 -113562420 - MER2 DNA MER2_type 0 344 1 1845 191 137 2 chr11 35221150 35221611 -113561861 - Charlie1b DNA MER1_type 0 523 1 1812 149 4 0 chr11 35222041 35222309 -113561163 + AluSx SINE Alu 1 269 -43 2017 86 16 0 chr11 35222313 35222569 -113560903 + AluY SINE Alu 32 291 -20 307 325 17 8 chr11 35223126 35223246 -113560226 + L1M4 LINE L1 4915 5035 -1111 1335 172 19 15 chr11 35223301 35223563 -113559909 + AluJb SINE Alu 33 295 -17 1528 170 43 18 chr11 35223724 35224006 -113559466 + AluJb SINE Alu 1 289 -23 32 0 0 0 chr11 35224007 35224039 -113559433 + AT_rich Low_complexity Low_complexity 1 32 0 2137 101 0 16 chr11 35224101 35224409 -113559063 + AluY SINE Alu 1 303 -8 2188 110 0 19 chr11 35224528 35224837 -113558635 + AluSx SINE Alu 1 303 -9 896 209 0 0 chr11 35224978 35225126 -113558346 + FRAM SINE Alu 1 146 -30 21 36 0 0 chr11 35225132 35225160 -113558312 + AT_rich Low_complexity Low_complexity 1 28 0 316 294 119 0 chr11 35225322 35225448 -113558024 - L2 LINE L2 -2 3311 3171 866 141 7 7 chr11 35225458 35225593 -113557879 + AluJo SINE Alu 1 135 -177 1526 167 44 24 chr11 35225593 35225887 -113557585 + AluJo SINE Alu 1 300 -12 1972 112 65 0 chr11 35225889 35226167 -113557305 + AluSg SINE Alu 1 296 -14 600 222 45 57 chr11 35226808 35226984 -113556488 + MER5B DNA MER1_type 2 175 -3 2073 124 7 0 chr11 35226992 35227283 -113556189 + AluSx SINE Alu 4 296 -16 421 231 0 0 chr11 35227307 35227385 -113556087 - Charlie4 DNA MER1_type -17 1944 1867 663 163 47 16 chr11 35227436 35227565 -113555907 - FLAM_A SINE Alu 0 133 1 508 176 84 53 chr11 35227649 35227780 -113555692 - Charlie4 DNA MER1_type -1802 159 25 2003 110 39 29 chr11 35228188 35228311 -113555161 + AluSx SINE Alu 1 121 -191 2284 105 0 0 chr11 35228311 35228637 -113554835 + AluSx SINE Alu 1 326 0 2003 110 39 29 chr11 35228637 35228819 -113554653 + AluSx SINE Alu 121 312 0 2004 139 3 0 chr11 35229149 35229444 -113554028 + AluJb SINE Alu 1 296 -16 3497 158 86 33 chr11 35229493 35229752 -113553720 - L1MB8 LINE L1 0 6178 5934 1789 173 16 7 chr11 35229752 35230059 -113553413 - AluJb SINE Alu -1 311 2 3497 158 86 33 chr11 35230059 35230616 -113552856 - L1MB8 LINE L1 -244 5934 5408 1490 138 0 24 chr11 35230616 35230862 -113552610 + AluSg/x SINE Alu 69 308 -2 3497 158 86 33 chr11 35230862 35230881 -113552591 - L1MB8 LINE L1 -770 5408 5391 771 182 0 0 chr11 35230881 35231002 -113552470 - FLAM_A SINE Alu -12 121 1 3497 158 86 33 chr11 35231002 35231107 -113552365 - L1MB8 LINE L1 -787 5391 5190 1087 166 156 70 chr11 35231193 35231253 -113552219 - Charlie1 DNA MER1_type 0 2761 2708 2186 90 14 3 chr11 35231253 35231542 -113551930 + AluSg SINE Alu 1 292 -18 1087 166 156 70 chr11 35231542 35231898 -113551574 - Charlie1 DNA MER1_type -53 2708 2309 773 222 0 0 chr11 35232066 35232249 -113551223 + FRAM SINE Alu 1 47 0 2205 112 0 13 chr11 35233062 35233367 -113550105 - AluSg SINE Alu -4 306 6 2226 103 0 31 chr11 35233648 35233969 -113549503 + AluY SINE Alu 1 311 0 705 143 9 0 chr11 35235272 35235377 -113548095 + FLAM_C SINE Alu 14 119 -24 23 0 0 0 chr11 35235385 35235408 -113548064 + AT_rich Low_complexity Low_complexity 1 23 0 2397 93 0 6 chr11 35235644 35235956 -113547516 + AluSx SINE Alu 1 310 -2 377 242 155 19 chr11 35236617 35236778 -113546694 + L1MC5 LINE L1 7749 7931 -30 245 199 273 28 chr11 35237048 35237224 -113546248 + L1MC4 LINE L1 7162 7380 -662 270 183 65 54 chr11 35237288 35237381 -113546091 + L1MC5 LINE L1 7301 7394 -567 409 257 163 47 chr11 35237501 35237747 -113545725 + L1MC4 LINE L1 7617 7924 -118 1438 155 17 48 chr11 35237747 35237887 -113545585 + AluJb SINE Alu 3 131 -181 2285 93 3 3 chr11 35237887 35238199 -113545273 + AluSx SINE Alu 1 312 0 1438 155 17 48 chr11 35238199 35238349 -113545123 + AluJb SINE Alu 131 284 -28 409 257 163 47 chr11 35238349 35238483 -113544989 + L1MC4 LINE L1 7924 8041 -1 351 209 301 13 chr11 35240596 35240749 -113542723 + MIR SINE MIR 32 228 -34 532 154 0 0 chr11 35240769 35240847 -113542625 + AluSx SINE Alu 3 80 -233 2340 51 3 42 chr11 35240849 35241160 -113542312 + AluY SINE Alu 1 299 -12 1543 102 58 9 chr11 35241160 35241384 -113542088 + AluSx SINE Alu 66 302 -8 794 138 24 0 chr11 35241793 35241916 -113541556 - MER46A DNA MER2_type -84 152 27 1394 79 0 0 chr11 35241925 35242102 -113541370 - AluSg/x SINE Alu -10 302 126 2037 98 6 35 chr11 35242102 35242418 -113541054 - AluY SINE Alu -4 307 1 225 133 0 0 chr11 35242418 35242448 -113541024 - MER46A DNA MER2_type -206 30 1 192 40 0 0 chr11 35242449 35242474 -113540998 + (TA)n Simple_repeat Simple_repeat 1 25 0 2306 104 0 0 chr11 35242474 35242782 -113540690 - AluSx SINE Alu -4 308 1 1972 145 7 0 chr11 35242960 35243256 -113540216 - AluSx SINE Alu -14 298 1 227 278 120 0 chr11 35243292 35243400 -113540072 - L1MC4 LINE L1 -31 8011 7891 22 0 0 0 chr11 35243414 35243436 -113540036 + AT_rich Low_complexity Low_complexity 1 22 0 245 295 48 0 chr11 35243469 35243574 -113539898 - L1MC4 LINE L1 -140 7902 7793 1703 161 32 4 chr11 35243587 35243867 -113539605 + AluJo SINE Alu 1 288 -24 2368 67 0 26 chr11 35243900 35244213 -113539259 + AluY SINE Alu 1 305 -6 546 196 35 28 chr11 35244261 35244404 -113539068 + L2 LINE L2 1869 2012 -1302 1543 170 40 14 chr11 35244457 35244733 -113538739 - AluJo SINE Alu -29 283 1 256 254 30 0 chr11 35244735 35244802 -113538670 + L2 LINE L2 1998 2066 -1248 315 0 0 0 chr11 35244807 35244842 -113538630 + (TG)n Simple_repeat Simple_repeat 2 36 0 2364 103 0 0 chr11 35245327 35245637 -113537835 - AluSg SINE Alu 0 310 1 944 138 6 40 chr11 35246392 35246566 -113536906 - FRAM SINE Alu -17 159 1 1885 88 0 4 chr11 35247911 35248161 -113535311 + AluSg SINE Alu 60 308 -2 2237 124 0 0 chr11 35248374 35248681 -113534791 + AluSx SINE Alu 2 308 -4 2220 93 4 0 chr11 35249308 35249612 -113533860 + AluSc SINE Alu 1 305 0 509 182 30 6 chr11 35249716 35249885 -113533587 + L1ME1 LINE L1 4549 4757 -1389 901 46 28 0 chr11 35249923 35250031 -113533441 - HY1 scRNA scRNA -1 111 1 2179 222 35 4 chr11 35250036 35250527 -113532945 + L1ME1 LINE L1 5561 6066 -100 913 133 8 0 chr11 35250544 35250672 -113532800 + AluSq/x SINE Alu 1 129 -183 304 243 14 0 chr11 35250698 35250772 -113532700 + L1ME1 LINE L1 6074 6148 -18 2024 134 0 0 chr11 35250782 35251108 -113532364 + AluSx SINE Alu 1 326 0 2068 171 16 8 chr11 35251138 35251512 -113531960 + L1MB2 LINE L1 5793 6169 -2 305 211 39 59 chr11 35251636 35251800 -113531672 - LTR33 LTR ERVL -184 337 75 283 246 0 0 chr11 35251857 35251918 -113531554 - LTR67 LTR ERVL -2 555 495 913 252 41 31 chr11 35252127 35252445 -113531027 - L1MC4 LINE L1 -20 8022 7702 312 245 103 45 chr11 35252481 35252636 -113530836 - L1MC5 LINE L1 -469 7492 7329 268 266 186 9 chr11 35252637 35252750 -113530722 - L1MC4a LINE L1 -417 7391 7259 2001 146 0 3 chr11 35252815 35253110 -113530362 - AluJb SINE Alu -18 294 1 377 183 24 194 chr11 35253123 35253257 -113530215 + L1MEd LINE L1 991 1064 -5055 738 229 0 0 chr11 35253257 35253379 -113530093 + FLAM_A SINE Alu 1 122 -11 377 183 24 194 chr11 35253379 35253496 -113529976 + L1MEd LINE L1 1064 1199 -4920 1101 141 24 6 chr11 35253523 35253693 -113529779 - AluSq SINE Alu -140 173 1 609 296 60 40 chr11 35253747 35254098 -113529374 + L1MEd LINE L1 1313 1670 -4640 451 288 59 81 chr11 35254246 35254604 -113528868 + L1MEd LINE L1 1870 2219 -4091 2385 84 7 0 chr11 35254649 35254948 -113528524 - AluSp SINE Alu -7 306 6 380 295 48 14 chr11 35254986 35255196 -113528276 + L1MEd LINE L1 2213 2429 -3700 593 244 175 17 chr11 35255205 35255296 -113528176 + L2 LINE L2 2067 2142 -1172 1407 194 3 99 chr11 35255296 35255488 -113527984 - AluJo SINE Alu -18 284 132 279 0 0 0 chr11 35255488 35255519 -113527953 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1407 194 3 99 chr11 35255519 35255640 -113527832 - AluJo SINE Alu -170 132 1 593 244 175 17 chr11 35255640 35255782 -113527690 + L2 LINE L2 2142 2337 -977 840 161 0 32 chr11 35255788 35255943 -113527529 + FRAM SINE Alu 20 169 -7 1096 264 6 54 chr11 35255961 35256295 -113527177 + L2 LINE L2 2343 2660 -654 1220 221 78 10 chr11 35256295 35256603 -113526869 - LTR16B LTR ERVL 0 464 136 499 256 45 8 chr11 35256701 35256834 -113526638 + L2 LINE L2 2661 2798 -516 2826 101 16 0 chr11 35257065 35257432 -113526040 + THE1C LTR MaLR 1 373 -2 851 207 113 35 chr11 35257674 35257703 -113525769 + L1MC4 LINE L1 6805 6830 -1212 4573 106 36 2 chr11 35257703 35258316 -113525156 - MER51A LTR ERV1 0 634 1 851 207 113 35 chr11 35258316 35258542 -113524930 + L1MC4 LINE L1 6830 7080 -962 2371 70 3 0 chr11 35258562 35258846 -113524626 + AluSp SINE Alu 1 285 -28 2273 114 7 0 chr11 35259130 35259436 -113524036 - AluSg SINE Alu -2 308 1 1289 39 0 6 chr11 35259780 35259936 -113523536 + AluY SINE Alu 131 285 -26 1450 83 5 0 chr11 35259963 35260155 -113523317 + AluY SINE Alu 119 311 0 798 169 0 8 chr11 35260267 35260391 -113523081 - MER2 DNA MER2_type -221 124 2 353 226 284 0 chr11 35260396 35260498 -113522974 + MIR SINE MIR 82 212 -50 1957 150 0 3 chr11 35261298 35261592 -113521880 + AluJb SINE Alu 1 293 -19 424 231 94 147 chr11 35261829 35262149 -113521323 - MLT1J LTR MaLR -4 507 205 364 300 127 17 chr11 35262272 35262509 -113520963 - MLT1L LTR MaLR -113 502 240 225 211 29 115 chr11 35262547 35262651 -113520821 - MLT1L LTR MaLR -482 133 39 183 278 153 56 chr11 35262654 35262798 -113520674 + MIR SINE MIR 35 192 -70 335 306 35 0 chr11 35263500 35263585 -113519887 + MIR SINE MIR 30 117 -91 739 275 130 43 chr11 35263658 35264120 -113519352 - MLT1J LTR MaLR -2 509 8 451 170 10 60 chr11 35266093 35266193 -113517279 + MER5B DNA MER1_type 1 95 -83 530 284 77 64 chr11 35267796 35268123 -113515349 - L2 LINE L2 -106 3166 2836 723 300 65 14 chr11 35268176 35268453 -113515019 + MLT1F1 LTR MaLR 2 292 -250 2112 191 35 76 chr11 35268468 35269048 -113514424 - MER34B LTR ERV1 -5 560 5 1089 160 66 19 chr11 35269052 35269265 -113514207 + MLT1F1 LTR MaLR 343 565 -2 351 188 12 71 chr11 35269288 35269373 -113514099 + MIR3 SINE MIR 77 156 -52 302 292 29 36 chr11 35270348 35270485 -113512987 + MIR SINE MIR 96 231 -31 661 268 98 38 chr11 35270517 35270752 -113512720 + MIR SINE MIR 14 262 0 28 0 0 0 chr11 35271236 35271264 -113512208 + AT_rich Low_complexity Low_complexity 1 28 0 5198 89 12 6 chr11 35271274 35271937 -113511535 - PABL_B LTR ERV1 0 667 1 582 180 54 0 chr11 35271959 35272070 -113511402 - Tigger7 DNA MER2_type 0 2487 2371 203 200 0 18 chr11 35272070 35272125 -113511347 + (CATA)n Simple_repeat Simple_repeat 4 57 0 521 283 65 22 chr11 35272315 35272700 -113510772 + L2 LINE L2 2595 3059 -213 234 93 0 47 chr11 35273660 35273703 -113509769 - MADE1 DNA Mariner -37 43 3 364 217 30 153 chr11 35273753 35273956 -113509516 - MIR SINE MIR -78 184 7 671 242 82 10 chr11 35274565 35274783 -113508689 + L1ME3A LINE L1 5933 6163 -1 514 277 29 0 chr11 35274824 35274961 -113508511 - MIR3 SINE MIR -33 175 35 717 279 141 10 chr11 35275080 35275436 -113508036 - L2 LINE L2 -681 2633 2163 523 203 31 47 chr11 35275437 35275565 -113507907 + MER106A DNA MER1_type 111 236 0 203 315 144 0 chr11 35275566 35275677 -113507795 - L2 LINE L2 -1477 1837 1711 765 288 9 35 chr11 35275718 35275944 -113507528 - MIR SINE MIR -15 247 28 232 214 18 0 chr11 35276001 35276057 -113507415 + (TA)n Simple_repeat Simple_repeat 2 58 0 333 0 0 0 chr11 35276059 35276096 -113507376 + (CA)n Simple_repeat Simple_repeat 2 38 0 621 276 76 13 chr11 35276734 35276959 -113506513 + MIR SINE MIR 13 251 -11 1450 168 29 29 chr11 35277789 35278069 -113505403 + MER7A DNA MER2_type 1 278 -68 350 349 33 7 chr11 35278168 35278320 -113505152 - MER5A DNA MER1_type 0 189 34 232 194 45 60 chr11 35278320 35278387 -113505085 - MER34 LTR ERV1 -4 538 473 5173 191 40 43 chr11 35278390 35279782 -113503690 + L1M1 LINE L1 16 2059 -5506 1006 260 83 67 chr11 35279899 35280419 -113503053 - L1MC4a LINE L1 -745 5555 5297 722 253 176 41 chr11 35280580 35280944 -113502528 - MLT1J2 LTR MaLR 0 450 34 243 0 0 0 chr11 35281594 35281621 -113501851 + (GA)n Simple_repeat Simple_repeat 1 27 0 908 113 20 53 chr11 35282219 35282260 -113501212 - MSTA LTR MaLR 0 428 387 2869 16 0 0 chr11 35282260 35282573 -113500899 + AluYb8 SINE Alu 1 313 -5 908 113 20 53 chr11 35282573 35282682 -113500790 - MSTA LTR MaLR -41 387 283 243 189 0 0 chr11 35283683 35283736 -113499736 + (ATG)n Simple_repeat Simple_repeat 1 53 0 230 262 95 32 chr11 35284278 35284404 -113499068 - MIR SINE MIR -10 252 119 213 290 22 91 chr11 35285156 35285327 -113498145 - MIR SINE MIR -70 138 34 665 163 0 0 chr11 35285539 35285637 -113497835 - AluSg/x SINE Alu -14 295 198 572 216 78 130 chr11 35285737 35285865 -113497607 + L1MC4 LINE L1 7267 7400 -642 2056 116 7 0 chr11 35285865 35286150 -113497322 - AluSx SINE Alu -25 287 1 572 216 78 130 chr11 35286150 35286190 -113497282 + L1MC4 LINE L1 7400 7441 -601 2705 209 46 60 chr11 35286190 35286804 -113496668 - MER77 LTR ERV1 0 605 1 572 216 78 130 chr11 35286804 35287004 -113496468 + L1MC4 LINE L1 7441 7617 -425 351 194 0 0 chr11 35287029 35287102 -113496370 - L1MB3 LINE L1 -202 5969 5897 822 195 7 66 chr11 35287238 35287510 -113495962 - L1MB2 LINE L1 -282 5887 5660 633 138 4 8 chr11 35287517 35287750 -113495722 + AluJb SINE Alu 6 307 -5 1851 172 32 130 chr11 35287751 35288109 -113495363 - L1MB2 LINE L1 -499 5672 5388 2197 117 0 0 chr11 35288109 35288407 -113495065 - AluSx SINE Alu -14 298 1 1851 172 32 130 chr11 35288407 35288647 -113494825 - L1MB2 LINE L1 -783 5388 5126 700 216 0 0 chr11 35288648 35288773 -113494699 - FLAM_C SINE Alu -12 131 7 981 160 27 5 chr11 35288773 35288960 -113494512 - L1MB2 LINE L1 -1005 5141 4951 2169 135 0 0 chr11 35288987 35289291 -113494181 - AluSx SINE Alu -8 304 1 2023 156 0 0 chr11 35290388 35290690 -113492782 - AluSx SINE Alu -10 302 1 2055 93 0 0 chr11 35290820 35291089 -113492383 - AluSx SINE Alu -5 307 39 225 0 0 0 chr11 35292985 35293010 -113490462 + (T)n Simple_repeat Simple_repeat 1 25 0 2199 82 3 17 chr11 35293172 35293484 -113489988 - AluY SINE Alu 0 311 1 1147 214 15 34 chr11 35293642 35293904 -113489568 + MIR SINE MIR 1 257 -5 209 309 0 0 chr11 35294055 35294110 -113489362 + (CTGGGG)n Simple_repeat Simple_repeat 4 58 0 1805 153 36 4 chr11 35294588 35294863 -113488609 - AluJb SINE Alu -26 286 3 1950 145 3 0 chr11 35294995 35295284 -113488188 - AluSx SINE Alu -22 290 1 402 294 21 7 chr11 35295575 35295718 -113487754 + L1MC4a LINE L1 5768 5912 -1896 2707 127 18 48 chr11 35295748 35296100 -113487372 - MSTC LTR MaLR 0 428 90 2260 101 10 0 chr11 35296100 35296398 -113487074 + AluSg SINE Alu 1 301 -9 2707 127 18 48 chr11 35296398 35296486 -113486986 - MSTC LTR MaLR -338 90 1 946 244 5 0 chr11 35297410 35297619 -113485853 - AluJb SINE Alu -102 210 1 2028 145 0 0 chr11 35297640 35297950 -113485522 - AluSx SINE Alu 0 310 1 940 140 86 53 chr11 35298328 35298738 -113484734 - LTR54B LTR ERV1 -4 494 1 2122 117 13 0 chr11 35298939 35299246 -113484226 + AluSq SINE Alu 1 311 -2 207 100 0 0 chr11 35299365 35299395 -113484077 + (T)n Simple_repeat Simple_repeat 1 30 0 186 353 24 24 chr11 35299509 35299594 -113483878 - MIR3 SINE MIR -8 200 116 23 55 0 18 chr11 35300189 35300227 -113483245 + AT_rich Low_complexity Low_complexity 1 39 -15 2327 114 0 0 chr11 35300227 35300534 -113482938 + AluSq SINE Alu 1 307 -6 23 55 0 18 chr11 35300534 35300550 -113482922 + AT_rich Low_complexity Low_complexity 39 54 0 648 35 59 12 chr11 35300550 35300635 -113482837 - HY3 scRNA scRNA -1 100 12 205 171 0 0 chr11 35300776 35300811 -113482661 - MIR SINE MIR -61 147 113 358 250 180 7 chr11 35300821 35300962 -113482510 + MLT1J LTR MaLR 15 218 -286 1941 110 3 66 chr11 35300967 35301285 -113482187 + AluSg1 SINE Alu 1 298 -11 525 257 151 0 chr11 35301414 35301566 -113481906 + MER5A DNA MER1_type 15 189 0 935 157 70 91 chr11 35301666 35301826 -113481646 - L1MB3 LINE L1 -2 6181 6019 192 40 0 0 chr11 35301826 35301851 -113481621 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2155 93 0 4 chr11 35301851 35302131 -113481341 - AluSg SINE Alu -31 279 1 935 157 70 91 chr11 35302131 35302257 -113481215 - L1MB3 LINE L1 -162 6021 5902 888 266 105 53 chr11 35302260 35302621 -113480851 + LTR16A LTR ERVL 16 395 -55 4293 208 48 82 chr11 35302826 35303014 -113480458 - L1MB3 LINE L1 -743 5403 5210 1894 166 3 6 chr11 35303014 35303327 -113480145 - AluJb SINE Alu 0 312 1 4293 208 48 82 chr11 35303327 35303366 -113480106 - L1MB3 LINE L1 -936 5210 5171 2237 112 0 6 chr11 35303366 35303679 -113479793 - AluSq SINE Alu -2 311 1 4293 208 48 82 chr11 35303679 35303763 -113479709 - L1MB3 LINE L1 -975 5171 5086 2250 108 0 7 chr11 35303763 35304068 -113479404 - AluSx SINE Alu -9 303 1 4293 208 48 82 chr11 35304068 35304294 -113479178 - L1MB3 LINE L1 -1060 5086 4854 2106 126 13 0 chr11 35304294 35304595 -113478877 + AluSq SINE Alu 1 305 -8 4293 208 48 82 chr11 35304595 35304897 -113478575 - L1MB3 LINE L1 -1292 4854 4543 810 120 0 0 chr11 35304897 35305022 -113478450 + (TTCC)n Simple_repeat Simple_repeat 3 127 0 1812 139 0 36 chr11 35305029 35305310 -113478162 - AluJo SINE Alu -30 282 12 4293 208 48 82 chr11 35305310 35305366 -113478106 - L1MB3 LINE L1 -1609 4537 4481 2450 144 19 14 chr11 35305366 35305507 -113477965 - L1MA9 LINE L1 -7 6305 6166 204 40 0 0 chr11 35305507 35305532 -113477940 + (TG)n Simple_repeat Simple_repeat 2 26 0 2450 144 19 14 chr11 35305532 35305806 -113477666 - L1MA9 LINE L1 -146 6166 5888 4293 208 48 82 chr11 35305806 35305922 -113477550 - L1MB3 LINE L1 -1665 4481 4363 2439 103 0 0 chr11 35305922 35306234 -113477238 + AluSx SINE Alu 1 312 0 4293 208 48 82 chr11 35306234 35306747 -113476725 - L1MB3 LINE L1 -1783 4363 4112 769 265 64 45 chr11 35306748 35307032 -113476440 + HERV16 LTR ERVL 2352 2629 -2367 2053 112 25 3 chr11 35307032 35307318 -113476154 - AluSx SINE Alu -20 292 1 769 265 64 45 chr11 35307318 35307514 -113475958 + HERV16 LTR ERVL 2629 2922 -2074 470 299 55 0 chr11 35307647 35307774 -113475698 - MIR SINE MIR -111 151 18 180 310 23 81 chr11 35307799 35307886 -113475586 - MIR SINE MIR -110 98 17 2090 151 0 0 chr11 35307950 35308255 -113475217 + AluSx SINE Alu 1 305 -7 540 260 101 18 chr11 35308280 35308449 -113475023 + MIR SINE MIR 16 198 -64 2123 112 0 11 chr11 35308646 35308933 -113474539 + AluSx SINE Alu 1 284 -28 213 39 0 0 chr11 35309319 35309345 -113474127 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2164 106 0 3 chr11 35309352 35309635 -113473837 - AluSg SINE Alu -24 286 5 1528 178 96 7 chr11 35309651 35309921 -113473551 - AluJb SINE Alu -18 294 1 1585 165 204 91 chr11 35309922 35310382 -113473090 + MLT2B1 LTR ERVL 9 520 0 * 2039 268 105 0 chr11 35310382 35310965 -113472507 - MER20B DNA MER1_type -136 647 3 2258 95 3 0 chr11 35310987 35311283 -113472189 - AluSx SINE Alu -15 297 1 447 215 75 3 chr11 35311363 35311506 -113471966 - MIR SINE MIR -65 143 39 253 241 9 107 chr11 35312535 35312550 -113470922 + L2 LINE L2 3171 3186 -86 2110 140 10 0 chr11 35312550 35312850 -113470622 - AluSx SINE Alu -9 303 1 253 241 9 107 chr11 35312850 35312946 -113470526 + L2 LINE L2 3186 3271 -1 527 273 157 12 chr11 35313141 35313422 -113470050 + L1ME4a LINE L1 5491 5825 -296 2617 64 0 0 chr11 35313422 35313733 -113469739 - AluY SINE Alu 0 311 1 527 273 157 12 chr11 35313733 35313770 -113469702 + L1ME4a LINE L1 5825 5855 -266 3391 205 35 33 chr11 35313803 35313978 -113469494 + L1MB2 LINE L1 4465 4638 -1508 2370 89 0 32 chr11 35313978 35314291 -113469181 + AluSq SINE Alu 1 303 -10 3391 205 35 33 chr11 35314291 35314955 -113468517 + L1MB2 LINE L1 4638 5305 -841 906 179 0 6 chr11 35314958 35315114 -113468358 + AluJb SINE Alu 120 274 -38 4480 149 51 37 chr11 35315131 35315922 -113467550 + L1MB2 LINE L1 5310 6121 -50 1426 158 0 138 chr11 35315922 35316271 -113467201 + AluJo SINE Alu 1 301 -11 4480 149 51 37 chr11 35316271 35316321 -113467151 + L1MB2 LINE L1 6121 6169 -2 253 235 0 0 chr11 35316332 35316383 -113467089 + AluSp SINE Alu 120 170 -133 2467 71 0 7 chr11 35316385 35316693 -113466779 - AluY SINE Alu -5 306 1 1694 155 0 36 chr11 35316694 35316972 -113466500 + AluJb SINE Alu 28 295 -17 276 261 99 28 chr11 35316988 35317009 -113466463 + L1MC/D LINE L1 5710 5728 -2080 2039 113 24 0 chr11 35317009 35317301 -113466171 + AluSx SINE Alu 11 309 -3 276 261 99 28 chr11 35317301 35317421 -113466051 + L1MC/D LINE L1 5728 5861 -1947 1784 160 10 10 chr11 35317662 35317955 -113465517 - AluJb SINE Alu -15 297 5 23 0 0 0 chr11 35317958 35317981 -113465491 + AT_rich Low_complexity Low_complexity 1 23 0 738 119 0 0 chr11 35318083 35318210 -113465262 - AluSg/x SINE Alu 0 333 207 422 190 51 0 chr11 35318211 35318290 -113465182 - MSTB2 LTR MaLR -372 85 3 2120 232 47 85 chr11 35318719 35319227 -113464245 - L2 LINE L2 -72 3241 2715 1803 114 12 0 chr11 35319227 35319473 -113463999 - AluSx SINE Alu -19 293 45 2120 232 47 85 chr11 35319473 35319497 -113463975 - L2 LINE L2 -598 2715 2692 13396 24 0 0 chr11 35319497 35321729 -113461743 - L1PA3 LINE L1 -7 6148 3917 2120 232 47 85 chr11 35321729 35321755 -113461717 - L2 LINE L2 -621 2692 2667 1982 139 0 0 chr11 35321755 35322035 -113461437 + AluSx SINE Alu 1 280 -32 245 0 86 0 chr11 35322039 35322074 -113461398 + A-rich Low_complexity Low_complexity 1 38 0 2120 232 47 85 chr11 35322074 35322545 -113460927 - L2 LINE L2 -649 2664 2236 2106 122 3 3 chr11 35322554 35322850 -113460622 + AluSx SINE Alu 1 296 -16 2608 55 0 0 chr11 35322882 35323193 -113460279 + AluY SINE Alu 1 311 0 309 145 0 0 chr11 35323256 35323318 -113460154 + (ATG)n Simple_repeat Simple_repeat 1 62 0 228 245 39 26 chr11 35323451 35323606 -113459866 + (CAT)n Simple_repeat Simple_repeat 1 157 0 1204 134 2 1 chr11 35323838 35325166 -113458306 - ALR/Alpha Satellite centromeric 0 1329 1 2202 113 0 17 chr11 35325618 35325919 -113457553 - AluSx SINE Alu -14 298 3 404 306 125 23 chr11 35326332 35326548 -113456924 - L1ME LINE L1 -345 5776 5539 1910 164 7 0 chr11 35326723 35327016 -113456456 - AluSx SINE Alu -17 295 1 860 258 39 32 chr11 35327016 35327447 -113456025 - L1ME LINE L1 -584 5582 5052 408 104 0 0 chr11 35327591 35327658 -113455814 + (ATG)n Simple_repeat Simple_repeat 2 68 0 2497 65 0 0 chr11 35327658 35327951 -113455521 - AluSx SINE Alu -17 295 3 364 312 126 19 chr11 35328364 35328579 -113454893 - L1ME LINE L1 -345 5776 5539 2237 93 10 0 chr11 35328754 35329044 -113454428 - AluSg SINE Alu -17 293 1 1700 166 58 7 chr11 35329345 35329640 -113453832 + AluJo SINE Alu 1 310 -2 2349 110 0 0 chr11 35329767 35330068 -113453404 + AluSq SINE Alu 1 301 -12 869 125 0 8 chr11 35330231 35330351 -113453121 - FLAM_C SINE Alu -14 119 1 2249 103 13 3 chr11 35330968 35331268 -113452204 + AluSc SINE Alu 1 303 -6 1618 182 26 26 chr11 35331625 35331932 -113451540 - AluJo SINE Alu -5 307 1 2349 90 0 0 chr11 35331942 35332242 -113451230 - AluY SINE Alu -11 300 1 217 274 39 0 chr11 35332303 35332354 -113451118 + L2 LINE L2 3210 3262 -10 341 287 96 12 chr11 35332940 35333107 -113450365 + MIR SINE MIR 5 185 -77 784 152 170 6 chr11 35333123 35333288 -113450184 - AluSq SINE Alu -1 312 121 959 201 43 0 chr11 35333289 35333473 -113449999 - L1MC1 LINE L1 0 6333 6142 746 167 44 0 chr11 35333521 35333635 -113449837 + FLAM_C SINE Alu 2 120 -23 320 0 0 24 chr11 35333635 35333676 -113449796 + (CA)n Simple_repeat Simple_repeat 1 40 0 247 125 0 0 chr11 35333676 35333708 -113449764 + Alu SINE Alu 89 120 -182 275 0 0 28 chr11 35333708 35333744 -113449728 + (CA)n Simple_repeat Simple_repeat 1 35 0 235 73 0 73 chr11 35333744 35333770 -113449702 + Alu SINE Alu 92 116 -186 198 0 0 0 chr11 35333770 35333792 -113449680 + (CA)n Simple_repeat Simple_repeat 2 23 0 235 73 0 73 chr11 35333792 35333806 -113449666 + Alu SINE Alu 116 129 -173 714 206 0 0 chr11 35333814 35333945 -113449527 - FLAM_A SINE Alu -3 139 9 333 315 103 38 chr11 35334597 35334781 -113448691 - MIR SINE MIR -44 218 23 1953 188 134 35 chr11 35334897 35335441 -113448031 + L1MC4 LINE L1 7442 8039 -3 1261 192 121 11 chr11 35335635 35335916 -113447556 - AluJo SINE Alu 0 312 1 659 255 90 0 chr11 35335961 35336161 -113447311 + MIR SINE MIR 10 227 -35 2054 119 0 11 chr11 35336165 35336451 -113447021 + AluSx SINE Alu 1 283 -29 2141 102 7 0 chr11 35337036 35337319 -113446153 - AluSg SINE Alu -25 285 1 817 165 0 8 chr11 35337329 35337456 -113446016 - FLAM_C SINE Alu -16 127 2 257 331 114 46 chr11 35338160 35338335 -113445137 - L3 LINE CR1 -20 1557 1371 1704 154 13 10 chr11 35338335 35338633 -113444839 + AluJo SINE Alu 1 299 -13 23 0 0 0 chr11 35338649 35338672 -113444800 + AT_rich Low_complexity Low_complexity 1 23 0 1899 129 39 4 chr11 35338786 35339066 -113444406 - AluSx SINE Alu -22 290 1 1397 181 58 24 chr11 35339069 35339361 -113444111 - AluJo SINE Alu -10 302 1 808 152 0 35 chr11 35340020 35340165 -113443307 - FLAM_C SINE Alu -3 140 1 497 191 351 0 chr11 35340211 35340379 -113443093 + MIR SINE MIR 9 235 -27 192 351 91 0 chr11 35340731 35340808 -113442664 + MIR3 SINE MIR 15 98 -110 389 231 111 0 chr11 35340809 35340926 -113442546 - MLT1H LTR MaLR 0 549 420 2211 88 7 3 chr11 35341023 35341306 -113442166 + AluSq SINE Alu 15 298 -15 1014 266 109 20 chr11 35341533 35342139 -113441333 - L2 LINE L2 -50 3263 2612 3697 234 157 26 chr11 35342139 35343522 -113439950 - L2 LINE L2 -479 2835 1272 2468 75 0 7 chr11 35343786 35344093 -113439379 - AluY SINE Alu -6 305 1 2084 132 0 0 chr11 35344351 35344640 -113438832 + AluSx SINE Alu 14 302 -10 1710 127 27 48 chr11 35344819 35345031 -113438441 + L1MB8 LINE L1 5702 5907 -271 2102 108 3 7 chr11 35345031 35345337 -113438135 - AluSx SINE Alu 0 305 1 1710 127 27 48 chr11 35345337 35345454 -113438018 + L1MB8 LINE L1 5907 6025 -153 1028 308 64 38 chr11 35346302 35346754 -113436718 + LTR16B LTR ERVL 1 464 0 198 313 131 20 chr11 35347472 35347571 -113435901 - L2 LINE L2 -4 3309 3200 565 200 296 0 chr11 35348005 35348140 -113435332 - MER5B DNA MER1_type -3 175 1 1895 219 90 17 chr11 35348215 35348466 -113435006 + L1MC4 LINE L1 6718 6949 -1093 1747 164 3 33 chr11 35348466 35348770 -113434702 - AluJo SINE Alu -12 300 6 1895 219 90 17 chr11 35348770 35349531 -113433941 + L1MC4 LINE L1 6949 8041 -1 537 287 0 38 chr11 35351793 35351950 -113431522 - MIR3 SINE MIR -18 190 40 2414 95 0 0 chr11 35352116 35352421 -113431051 - AluSg SINE Alu -5 305 1 2086 154 3 0 chr11 35352666 35352977 -113430495 - AluSx SINE Alu 0 312 1 1748 153 7 24 chr11 35353179 35353473 -113429999 - AluJo SINE Alu -23 289 1 571 241 53 0 chr11 35353542 35353675 -113429797 - MIR SINE MIR -5 257 118 819 225 0 6 chr11 35353696 35353869 -113429603 - AluJo SINE Alu -20 292 121 196 337 54 11 chr11 35353889 35353981 -113429491 - L3b LINE CR1 -369 1214 1119 324 102 0 0 chr11 35354259 35354308 -113429164 + (TGGA)n Simple_repeat Simple_repeat 4 52 0 2242 136 95 3 chr11 35354566 35354956 -113428516 - MSTB LTR MaLR 0 426 1 194 0 39 0 chr11 35355468 35355494 -113427978 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 475 312 35 69 chr11 35355909 35356140 -113427332 - L2 LINE L2 -62 3210 2988 1415 94 80 0 chr11 35356341 35356554 -113426918 + MER30 DNA MER1_type 1 230 0 579 301 235 26 chr11 35356673 35357561 -113425911 - L2 LINE L2 -657 2657 1584 977 298 69 16 chr11 35357717 35358080 -113425392 - L2 LINE L2 -12 3301 2920 300 354 113 40 chr11 35358253 35358812 -113424660 + L2 LINE L2 2626 3231 -41 2180 110 0 16 chr11 35359133 35359450 -113424022 - AluSx SINE Alu 0 312 1 2350 113 0 0 chr11 35359456 35359766 -113423706 - AluSg SINE Alu 0 310 1 2368 77 0 0 chr11 35360041 35360326 -113423146 - AluSc SINE Alu -24 285 1 379 221 76 35 chr11 35361402 35361547 -113421925 - MIR SINE MIR -109 153 3 1799 145 26 23 chr11 35361867 35362170 -113421302 - AluJb SINE Alu -8 304 1 2155 129 0 10 chr11 35363612 35363922 -113419550 + AluSx SINE Alu 1 307 -5 2062 82 42 49 chr11 35364334 35364640 -113418832 - AluSp SINE Alu -9 304 1 277 372 115 0 chr11 35364877 35365025 -113418447 + MIR3 SINE MIR 37 201 -7 387 0 0 0 chr11 35365042 35365085 -113418387 + (TG)n Simple_repeat Simple_repeat 2 44 0 1992 142 3 0 chr11 35365086 35365374 -113418098 - AluSx SINE Alu -23 289 1 357 240 134 39 chr11 35365830 35366009 -113417463 - L1MC4 LINE L1 -15 8027 7832 21 36 0 0 chr11 35366878 35366906 -113416566 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr11 35367789 35367812 -113415660 + AT_rich Low_complexity Low_complexity 1 23 0 1662 164 38 7 chr11 35368701 35368988 -113414484 + AluJo SINE Alu 1 296 -16 1797 160 0 7 chr11 35371235 35371540 -113411932 - AluJb SINE Alu 0 308 6 1866 136 14 7 chr11 35371579 35371859 -113411613 - AluSx SINE Alu -30 282 1 1809 151 0 25 chr11 35372184 35372468 -113411004 + AluJo SINE Alu 6 282 -30 209 105 0 26 chr11 35372470 35372508 -113410964 + (GGAA)n Simple_repeat Simple_repeat 4 40 0 231 253 25 0 chr11 35372685 35372764 -113410708 + (TA)n Simple_repeat Simple_repeat 2 82 0 367 284 151 46 chr11 35374396 35374614 -113408858 + MIR SINE MIR 20 260 -2 212 263 13 26 chr11 35374614 35374690 -113408782 + (TAG)n Simple_repeat Simple_repeat 3 77 0 29 60 0 0 chr11 35377610 35377660 -113405812 + AT_rich Low_complexity Low_complexity 1 50 0 435 320 47 0 chr11 35378901 35379051 -113404421 - MIR SINE MIR -59 203 47 1234 219 134 19 chr11 35379456 35379866 -113403606 - L1ME3A LINE L1 -264 5906 5450 193 194 0 0 chr11 35380100 35380131 -113403341 + L2 LINE L2 3214 3244 -28 599 281 257 16 chr11 35380139 35380725 -113402747 - L2 LINE L2 -6 3307 2594 888 221 29 0 chr11 35380759 35381003 -113402469 - L1ME3A LINE L1 -918 5228 4978 470 278 67 93 chr11 35381422 35381565 -113401907 - L1MC4 LINE L1 0 8042 7897 2206 102 3 0 chr11 35381565 35381850 -113401622 - AluSx SINE Alu -26 286 1 470 278 67 93 chr11 35381850 35382167 -113401305 - L1MC4 LINE L1 -145 7897 7594 2311 96 0 0 chr11 35382180 35382472 -113401000 - AluSx SINE Alu -9 303 12 770 234 203 48 chr11 35382694 35383113 -113400359 - L1MC4 LINE L1 -749 7293 6810 235 350 73 8 chr11 35383708 35383831 -113399641 + L2 LINE L2 3183 3313 0 237 339 110 18 chr11 35383851 35383960 -113399512 + MIR SINE MIR 31 149 -59 295 270 149 42 chr11 35383963 35384261 -113399211 - MER102a DNA MER1_type -2 328 7 862 204 0 25 chr11 35384462 35384624 -113398848 - FRAM SINE Alu -8 158 1 2556 49 0 3 chr11 35384636 35385126 -113398346 - AluY SINE Alu 0 489 1 297 293 28 47 chr11 35385433 35385539 -113397933 - MIR SINE MIR -78 184 81 2064 99 0 25 chr11 35385544 35385828 -113397644 + AluSx SINE Alu 1 277 -35 279 54 0 0 chr11 35385828 35385865 -113397607 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 2076 205 61 85 chr11 35385956 35386236 -113397236 + MER63D DNA MER1_type 8 293 -768 420 20 0 0 chr11 35386236 35386285 -113397187 + (TATAG)n Simple_repeat Simple_repeat 2 50 0 2076 205 61 85 chr11 35386285 35386925 -113396547 + MER63D DNA MER1_type 293 906 -155 5336 174 30 9 chr11 35386931 35387983 -113395489 - Tigger6a DNA MER2_type -7 1076 3 774 176 27 0 chr11 35387989 35388137 -113395335 + MER63D DNA MER1_type 909 1060 0 521 295 15 80 chr11 35388464 35388803 -113394669 - MLT1I LTR MaLR -19 390 99 748 159 7 29 chr11 35388859 35388997 -113394475 + MER2 DNA MER2_type 1 135 -210 1636 150 11 28 chr11 35388998 35389284 -113394188 + AluJo SINE Alu 1 281 -31 486 49 0 0 chr11 35389287 35389348 -113394124 + (CATA)n Simple_repeat Simple_repeat 2 62 0 1734 148 27 40 chr11 35389394 35389578 -113393894 - AluJb SINE Alu -18 294 114 240 35 0 0 chr11 35389578 35389607 -113393865 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1734 148 27 40 chr11 35389607 35389720 -113393752 - AluJb SINE Alu -198 114 1 587 196 119 26 chr11 35389721 35389915 -113393557 + MER2 DNA MER2_type 126 337 -8 317 165 44 121 chr11 35390106 35390171 -113393301 + MER5A DNA MER1_type 9 68 -121 2111 113 0 3 chr11 35390171 35390486 -113392986 + AluSx SINE Alu 1 314 0 317 165 44 121 chr11 35390486 35390510 -113392962 + MER5A DNA MER1_type 68 92 -97 195 235 0 0 chr11 35390535 35390633 -113392839 + T-rich Low_complexity Low_complexity 1 98 0 426 130 60 10 chr11 35390889 35390989 -113392483 + CT-rich Low_complexity Low_complexity 2 106 0 660 181 39 0 chr11 35391451 35391578 -113391894 - FLAM_C SINE Alu 0 133 2 1742 185 68 7 chr11 35391599 35392010 -113391462 - L1MB8 LINE L1 -101 6077 5642 185 312 67 0 chr11 35392072 35392133 -113391339 - MIR SINE MIR -100 108 43 2186 106 0 0 chr11 35392390 35392692 -113390780 - AluSx SINE Alu 0 302 1 200 353 59 13 chr11 35392971 35393124 -113390348 + L2 LINE L2 2606 2765 -549 2273 92 3 0 chr11 35393500 35393794 -113389678 - AluSx SINE Alu -17 295 1 769 305 64 17 chr11 35394226 35394462 -113389010 - MIR SINE MIR -4 258 12 2320 101 0 19 chr11 35394916 35395232 -113388240 - AluSg SINE Alu 0 310 1 258 105 0 0 chr11 35396170 35396208 -113387264 + (TCCC)n Simple_repeat Simple_repeat 3 40 0 2250 97 7 0 chr11 35396210 35396498 -113386974 - AluSx SINE Alu -22 290 1 1085 234 164 15 chr11 35396716 35397105 -113386367 + L2 LINE L2 2863 3309 -4 302 290 28 19 chr11 35397111 35397218 -113386254 + L2 LINE L2 3158 3265 -7 208 258 48 16 chr11 35397389 35397451 -113386021 + L2 LINE L2 3243 3306 -7 34 72 0 0 chr11 35397786 35397855 -113385617 + GC_rich Low_complexity Low_complexity 1 69 0 365 288 88 125 chr11 35398133 35398488 -113384984 - L1M2 LINE L1 -5519 1330 942 27 29 0 0 chr11 35398488 35398522 -113384950 + GC_rich Low_complexity Low_complexity 1 34 0 365 288 88 125 chr11 35398522 35398773 -113384699 - L1M2 LINE L1 -5907 942 683 237 158 18 35 chr11 35401384 35401441 -113382031 - L2 LINE L2 0 3272 3217 740 203 6 25 chr11 35401452 35401615 -113381857 + MIR SINE MIR 93 252 -10 205 232 36 0 chr11 35401645 35401701 -113381771 - L2 LINE L2 -26 3246 3189 1804 167 17 53 chr11 35402218 35402577 -113380895 - L1P LINE L1 -3389 2757 2412 183 129 0 0 chr11 35402701 35402732 -113380740 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 468 294 156 12 chr11 35402857 35403017 -113380455 - MER5A DNA MER1_type 0 189 7 2890 260 106 13 chr11 35403026 35404350 -113379122 - L2 LINE L2 -141 3172 1719 351 333 17 0 chr11 35405334 35405451 -113378021 - L2 LINE L2 -4 3268 3150 488 261 110 23 chr11 35405484 35405724 -113377748 - Charlie8 DNA MER1_type -1032 1385 36 4577 192 85 34 chr11 35405765 35407125 -113376347 - L1ME1 LINE L1 -5 6161 4649 1044 201 33 9 chr11 35407125 35407339 -113376133 - MER20 DNA MER1_type 0 219 1 4577 192 85 34 chr11 35407339 35408149 -113375323 - L1ME1 LINE L1 -1517 4649 3881 2224 113 0 7 chr11 35408193 35408486 -113374986 + AluSq SINE Alu 1 291 -22 383 237 90 45 chr11 35408507 35408619 -113374853 - L1ME1 LINE L1 -2403 3743 3618 2030 145 0 0 chr11 35408619 35408933 -113374539 + AluSx SINE Alu 1 314 0 383 237 90 45 chr11 35408933 35408996 -113374476 - L1ME1 LINE L1 -2528 3618 3559 2188 139 0 0 chr11 35409097 35409400 -113374072 - AluSx SINE Alu -9 303 1 197 219 0 0 chr11 35409524 35409565 -113373907 + MIR SINE MIR 97 137 -71 27 49 0 0 chr11 35409801 35409842 -113373630 + AT_rich Low_complexity Low_complexity 1 41 0 2472 127 33 0 chr11 35409894 35410257 -113373215 - THE1C LTR MaLR 0 375 1 331 280 207 15 chr11 35460318 35460589 -113322883 - L2 LINE L2 -1408 1906 1584 977 298 69 16 chr11 35460745 35461108 -113322364 - L2 LINE L2 -12 3301 2920 300 354 113 40 chr11 35461281 35461840 -113321632 + L2 LINE L2 2626 3231 -41 2180 110 0 16 chr11 35462161 35462478 -113320994 - AluSx SINE Alu 0 312 1 2350 113 0 0 chr11 35462484 35462794 -113320678 - AluSg SINE Alu 0 310 1 2368 77 0 0 chr11 35463069 35463354 -113320118 - AluSc SINE Alu -24 285 1 379 221 76 35 chr11 35464429 35464574 -113318898 - MIR SINE MIR -109 153 3 1739 147 26 32 chr11 35464885 35465198 -113318274 - AluJb SINE Alu -1 311 1 1736 157 0 11 chr11 35466640 35466914 -113316558 + AluSx SINE Alu 1 271 -41 2062 82 42 49 chr11 35467296 35467602 -113315870 - AluSp SINE Alu -9 304 1 277 372 115 0 chr11 35467839 35467987 -113315485 + MIR3 SINE MIR 37 201 -7 387 0 0 0 chr11 35468004 35468047 -113315425 + (TG)n Simple_repeat Simple_repeat 2 44 0 1992 142 3 0 chr11 35468048 35468336 -113315136 - AluSx SINE Alu -23 289 1 357 240 134 39 chr11 35468792 35468971 -113314501 - L1MC4 LINE L1 -15 8027 7832 21 36 0 0 chr11 35469840 35469868 -113313604 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr11 35470752 35470775 -113312697 + AT_rich Low_complexity Low_complexity 1 23 0 1662 164 38 7 chr11 35471664 35471951 -113311521 + AluJo SINE Alu 1 296 -16 1797 160 0 7 chr11 35474198 35474503 -113308969 - AluJb SINE Alu 0 308 6 1866 136 14 7 chr11 35474542 35474822 -113308650 - AluSx SINE Alu -30 282 1 1809 151 0 25 chr11 35475376 35475660 -113307812 + AluJo SINE Alu 6 282 -30 209 105 0 26 chr11 35475662 35475700 -113307772 + (GGAA)n Simple_repeat Simple_repeat 4 40 0 231 253 25 0 chr11 35475877 35475956 -113307516 + (TA)n Simple_repeat Simple_repeat 2 82 0 367 284 151 46 chr11 35477588 35477806 -113305666 + MIR SINE MIR 20 260 -2 212 263 13 26 chr11 35477806 35477882 -113305590 + (TAG)n Simple_repeat Simple_repeat 3 77 0 29 60 0 0 chr11 35480895 35480945 -113302527 + AT_rich Low_complexity Low_complexity 1 50 0 435 320 47 0 chr11 35482318 35482468 -113301004 - MIR SINE MIR -59 203 47 1234 219 134 19 chr11 35482873 35483283 -113300189 - L1ME3A LINE L1 -264 5906 5450 193 194 0 0 chr11 35483517 35483548 -113299924 + L2 LINE L2 3214 3244 -28 599 281 257 16 chr11 35483556 35484142 -113299330 - L2 LINE L2 -6 3307 2594 888 221 29 0 chr11 35484176 35484420 -113299052 - L1ME3A LINE L1 -918 5228 4978 470 278 67 93 chr11 35484839 35484982 -113298490 - L1MC4 LINE L1 0 8042 7897 2206 102 3 0 chr11 35484982 35485267 -113298205 - AluSx SINE Alu -26 286 1 470 278 67 93 chr11 35485267 35485584 -113297888 - L1MC4 LINE L1 -145 7897 7594 2311 96 0 0 chr11 35485597 35485889 -113297583 - AluSx SINE Alu -9 303 12 770 234 203 48 chr11 35486111 35486530 -113296942 - L1MC4 LINE L1 -749 7293 6810 235 350 73 8 chr11 35487125 35487248 -113296224 + L2 LINE L2 3183 3313 0 237 339 110 18 chr11 35487268 35487377 -113296095 + MIR SINE MIR 31 149 -59 295 270 149 42 chr11 35487380 35487678 -113295794 - MER102a DNA MER1_type -2 328 7 862 204 0 25 chr11 35487879 35488041 -113295431 - FRAM SINE Alu -8 158 1 2556 49 0 3 chr11 35488053 35488543 -113294929 - AluY SINE Alu 0 489 1 297 293 28 47 chr11 35488850 35488956 -113294516 - MIR SINE MIR -78 184 81 2064 99 0 25 chr11 35488961 35489245 -113294227 + AluSx SINE Alu 1 277 -35 279 54 0 0 chr11 35489245 35489282 -113294190 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 1936 212 61 85 chr11 35489373 35489653 -113293819 + MER63D DNA MER1_type 8 293 -768 420 20 0 0 chr11 35489653 35489702 -113293770 + (TATAG)n Simple_repeat Simple_repeat 2 50 0 1936 212 61 85 chr11 35489702 35490342 -113293130 + MER63D DNA MER1_type 293 906 -155 5336 174 30 9 chr11 35490348 35491400 -113292072 - Tigger6a DNA MER2_type -7 1076 3 774 176 27 0 chr11 35491406 35491554 -113291918 + MER63D DNA MER1_type 911 1062 0 521 295 15 80 chr11 35491881 35492220 -113291252 - MLT1I LTR MaLR -19 390 99 748 159 7 29 chr11 35492276 35492414 -113291058 + MER2 DNA MER2_type 1 135 -210 877 178 11 43 chr11 35492415 35492600 -113290872 + AluJo SINE Alu 1 179 -133 486 49 0 0 chr11 35492735 35492796 -113290676 + (CATA)n Simple_repeat Simple_repeat 2 62 0 1734 148 27 40 chr11 35492842 35493026 -113290446 - AluJb SINE Alu -18 294 114 240 35 0 0 chr11 35493026 35493055 -113290417 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1734 148 27 40 chr11 35493055 35493168 -113290304 - AluJb SINE Alu -198 114 1 587 196 119 26 chr11 35493169 35493363 -113290109 + MER2 DNA MER2_type 126 337 -8 317 165 44 121 chr11 35493553 35493618 -113289854 + MER5A DNA MER1_type 9 68 -121 2111 113 0 3 chr11 35493618 35493933 -113289539 + AluSx SINE Alu 1 314 0 317 165 44 121 chr11 35493933 35493957 -113289515 + MER5A DNA MER1_type 68 92 -97 195 235 0 0 chr11 35493982 35494080 -113289392 + T-rich Low_complexity Low_complexity 1 98 0 426 130 60 10 chr11 35494336 35494436 -113289036 + CT-rich Low_complexity Low_complexity 2 106 0 660 181 39 0 chr11 35494897 35495024 -113288448 - FLAM_C SINE Alu 0 133 2 1742 185 68 7 chr11 35495045 35495456 -113288016 - L1MB8 LINE L1 -101 6077 5642 185 312 67 0 chr11 35495518 35495579 -113287893 - MIR SINE MIR -100 108 43 2186 106 0 0 chr11 35495836 35496138 -113287334 - AluSx SINE Alu 0 302 1 200 353 59 13 chr11 35496417 35496570 -113286902 + L2 LINE L2 2606 2765 -549 2273 92 3 0 chr11 35496946 35497240 -113286232 - AluSx SINE Alu -17 295 1 769 305 64 17 chr11 35497672 35497908 -113285564 - MIR SINE MIR -4 258 12 2320 101 0 19 chr11 35498362 35498678 -113284794 - AluSg SINE Alu 0 310 1 258 105 0 0 chr11 35499616 35499654 -113283818 + (TCCC)n Simple_repeat Simple_repeat 3 40 0 2250 97 7 0 chr11 35499656 35499944 -113283528 - AluSx SINE Alu -22 290 1 1085 234 164 15 chr11 35500162 35500551 -113282921 + L2 LINE L2 2863 3309 -4 302 290 28 19 chr11 35500557 35500664 -113282808 + L2 LINE L2 3158 3265 -7 208 258 48 16 chr11 35500835 35500897 -113282575 + L2 LINE L2 3243 3306 -7 34 72 0 0 chr11 35501232 35501301 -113282171 + GC_rich Low_complexity Low_complexity 1 69 0 28 29 0 0 chr11 35501563 35501598 -113281874 + GC_rich Low_complexity Low_complexity 1 35 0 27 29 0 0 chr11 35501934 35501968 -113281504 + GC_rich Low_complexity Low_complexity 1 34 0 237 158 18 35 chr11 35504830 35504887 -113278585 - L2 LINE L2 0 3272 3217 740 203 6 25 chr11 35504898 35505061 -113278411 + MIR SINE MIR 93 252 -10 205 232 36 0 chr11 35505091 35505147 -113278325 - L2 LINE L2 -26 3246 3189 1804 167 17 53 chr11 35505664 35506023 -113277449 - L1P LINE L1 -3389 2757 2412 183 129 0 0 chr11 35506147 35506178 -113277294 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 468 294 156 12 chr11 35506303 35506463 -113277009 - MER5A DNA MER1_type 0 189 7 2890 260 106 13 chr11 35506472 35507796 -113275676 - L2 LINE L2 -141 3172 1719 351 333 17 0 chr11 35508780 35508897 -113274575 - L2 LINE L2 -4 3268 3150 488 261 110 23 chr11 35508930 35509170 -113274302 - Charlie8 DNA MER1_type -1021 1396 36 4567 193 85 34 chr11 35509211 35510571 -113272901 - L1ME1 LINE L1 -5 6161 4649 1044 201 33 9 chr11 35510571 35510785 -113272687 - MER20 DNA MER1_type 0 219 1 4567 193 85 34 chr11 35510785 35511595 -113271877 - L1ME1 LINE L1 -1517 4649 3881 2224 113 0 7 chr11 35511639 35511932 -113271540 + AluSq SINE Alu 1 291 -22 383 237 90 45 chr11 35511953 35512065 -113271407 - L1ME1 LINE L1 -2403 3743 3618 2030 145 0 0 chr11 35512065 35512379 -113271093 + AluSx SINE Alu 1 314 0 383 237 90 45 chr11 35512379 35512442 -113271030 - L1ME1 LINE L1 -2528 3618 3559 2188 139 0 0 chr11 35512543 35512846 -113270626 - AluSx SINE Alu -9 303 1 197 219 0 0 chr11 35512970 35513011 -113270461 + MIR SINE MIR 97 137 -71 27 49 0 0 chr11 35513247 35513288 -113270184 + AT_rich Low_complexity Low_complexity 1 41 0 2472 127 33 0 chr11 35513340 35513703 -113269769 - THE1C LTR MaLR 0 375 1 772 242 15 25 chr11 35515283 35515481 -113267991 - MIR SINE MIR -46 216 21 594 175 101 17 chr11 35516008 35516165 -113267307 + MER63A DNA MER1_type 40 210 0 343 297 96 50 chr11 35517187 35517406 -113266066 - MIR SINE MIR 0 262 34 376 231 92 51 chr11 35517458 35517653 -113265819 - L1MC4 LINE L1 -1 8041 7839 678 197 13 112 chr11 35517704 35517937 -113265535 - L1ME2 LINE L1 -11 6153 5944 567 153 0 0 chr11 35518020 35518105 -113265367 - AluJ/FLAM SINE Alu -227 85 1 239 267 58 0 chr11 35518211 35518297 -113265175 + L2 LINE L2 2625 2715 -599 363 278 90 65 chr11 35518424 35518669 -113264803 + L2 LINE L2 2925 3175 -97 1561 184 37 0 chr11 35519330 35519451 -113264021 + AluJb SINE Alu 1 116 -216 183 42 0 0 chr11 35519451 35519475 -113263997 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1561 184 37 0 chr11 35519475 35519675 -113263797 + AluJb SINE Alu 116 332 0 643 264 81 25 chr11 35519700 35519897 -113263575 + MER102a DNA MER1_type 87 294 -36 937 269 110 18 chr11 35519903 35520286 -113263186 - MLT1J2 LTR MaLR -18 432 15 253 226 97 0 chr11 35520290 35520352 -113263120 + MER102a DNA MER1_type 263 330 0 502 189 126 0 chr11 35520399 35520510 -113262962 + L2 LINE L2 3189 3313 0 364 91 0 0 chr11 35520809 35520864 -113262608 - L1PB1 LINE L1 -1 6150 6096 1923 128 8 0 chr11 35521939 35522205 -113261267 + AluSx SINE Alu 31 298 -14 2169 124 0 10 chr11 35522346 35522645 -113260827 + AluSg SINE Alu 1 296 -14 2343 60 0 11 chr11 35522724 35523006 -113260466 + AluSg SINE Alu 1 279 -31 414 0 0 0 chr11 35523006 35523052 -113260420 + (CA)n Simple_repeat Simple_repeat 1 46 0 2252 105 16 0 chr11 35523213 35523517 -113259955 - AluSq SINE Alu -4 309 1 301 239 65 11 chr11 35523612 35523704 -113259768 + MER5C DNA MER1_type 28 124 -200 2317 116 0 0 chr11 35524246 35524548 -113258924 - AluSx SINE Alu -10 302 1 22 35 0 0 chr11 35525358 35525387 -113258085 + AT_rich Low_complexity Low_complexity 1 29 0 590 273 29 19 chr11 35526065 35526270 -113257202 - MIR SINE MIR -21 241 35 325 114 57 21 chr11 35526483 35526623 -113256849 + (TA)n Simple_repeat Simple_repeat 1 145 0 30 45 0 0 chr11 35526643 35526687 -113256785 + AT_rich Low_complexity Low_complexity 1 44 0 1245 158 200 0 chr11 35526866 35527106 -113256366 - AluJb SINE Alu -10 292 5 274 288 174 0 chr11 35527171 35527303 -113256169 - MER102a DNA MER1_type 0 330 176 303 159 48 0 chr11 35527478 35527541 -113255931 - L1M LINE L1 -824 5350 5285 835 227 160 7 chr11 35527541 35527841 -113255631 + L2 LINE L2 1821 2166 -1148 686 241 121 31 chr11 35527857 35528147 -113255325 + L2 LINE L2 2420 2735 -579 543 162 0 0 chr11 35528150 35528249 -113255223 + CT-rich Low_complexity Low_complexity 4 102 0 260 167 33 0 chr11 35528265 35528325 -113255147 + MER103 DNA DNA 83 144 -22 511 138 0 11 chr11 35528327 35528421 -113255051 + (TCCC)n Simple_repeat Simple_repeat 2 94 0 374 284 0 9 chr11 35528897 35529006 -113254466 + L2 LINE L2 3160 3267 -5 4801 109 104 140 chr11 35529006 35530452 -113253020 - pTR5 LTR ERV1 0 2438 66 357 19 0 0 chr11 35530585 35530642 -113252830 - L1P LINE L1 -844 5302 5246 6484 64 11 22 chr11 35530766 35532216 -113251256 + L1PA8A LINE L1 4680 6123 -8 2067 109 7 0 chr11 35532335 35532611 -113250861 + THE1B LTR MaLR 87 364 0 2979 64 5 47 chr11 35532657 35533064 -113250408 - HERVL LTR ERVL -2495 3159 2770 246 225 175 0 chr11 35533778 35533858 -113249614 - MIR SINE MIR -10 252 159 273 149 0 21 chr11 35533864 35533902 -113249570 - MLT2D LTR ERVL -2 412 374 630 71 0 0 chr11 35533902 35533986 -113249486 + (TA)n Simple_repeat Simple_repeat 2 85 0 1336 187 90 25 chr11 35534037 35534358 -113249114 - MER2 DNA MER2_type 0 344 3 1120 207 64 44 chr11 35534378 35534766 -113248706 - MLT2B1 LTR ERVL -40 480 1 426 273 28 14 chr11 35534766 35534909 -113248563 - MIR SINE MIR -99 163 19 294 209 11 77 chr11 35534973 35535064 -113248408 - MIR SINE MIR -94 114 30 389 296 181 10 chr11 35535600 35535799 -113247673 + MIR SINE MIR 28 260 -2 21 0 0 0 chr11 35536990 35537011 -113246461 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr11 35537064 35537084 -113246388 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1827 138 63 8 chr11 35537086 35537354 -113246118 - AluSx SINE Alu -29 283 1 512 287 80 34 chr11 35537364 35537398 -113246074 - L1MEc LINE L1 -3875 2846 2815 831 118 25 103 chr11 35537398 35537533 -113245939 - L1MA4A LINE L1 -1 6302 6187 2297 67 22 29 chr11 35537533 35537846 -113245626 - AluY SINE Alu 0 311 1 831 118 25 103 chr11 35537846 35537913 -113245559 - L1MA4A LINE L1 -116 6187 6116 512 287 80 34 chr11 35537913 35538260 -113245212 - L1MEc LINE L1 -3906 2815 2436 2891 10 0 3 chr11 35538260 35538572 -113244900 - AluYa5 SINE Alu 0 311 1 512 287 80 34 chr11 35538572 35538666 -113244806 - L1MEc LINE L1 -4285 2436 2348 349 241 41 77 chr11 35538892 35539062 -113244410 - L1MEc LINE L1 -4517 2023 1860 953 35 0 0 chr11 35539062 35539177 -113244295 - L1PA4 LINE L1 0 6155 6041 495 227 0 0 chr11 35539278 35539497 -113243975 + (CA)n Simple_repeat Simple_repeat 1 219 0 410 228 0 6 chr11 35539512 35539692 -113243780 + (CA)n Simple_repeat Simple_repeat 2 180 0 204 214 54 0 chr11 35539741 35539797 -113243675 + CT-rich Low_complexity Low_complexity 3 61 0 350 228 54 11 chr11 35539806 35539898 -113243574 + MER112 DNA MER1_type 163 258 -2 2170 119 3 10 chr11 35540308 35540620 -113242852 + AluSx SINE Alu 1 310 -2 2387 74 10 3 chr11 35540793 35541091 -113242381 + AluSx SINE Alu 1 300 -12 2289 95 7 3 chr11 35541629 35541933 -113241539 + AluSc SINE Alu 3 307 -2 2345 34 0 0 chr11 35543137 35543402 -113240070 - AluY SINE Alu -1 310 46 2138 108 7 23 chr11 35543407 35543712 -113239760 - AluSx SINE Alu -12 300 1 231 167 19 0 chr11 35544536 35544590 -113238882 + LTR66 LTR ERVL 385 439 -171 1701 111 0 53 chr11 35544773 35545035 -113238437 + AluSx SINE Alu 57 304 -8 185 300 0 44 chr11 35546146 35546236 -113237236 - MIR3 SINE MIR -15 193 108 426 276 55 39 chr11 35546255 35546451 -113237021 + MIR SINE MIR 11 203 -59 233 313 45 15 chr11 35546775 35546909 -113236563 - L2 LINE L2 -241 3031 2894 223 291 48 56 chr11 35546921 35547172 -113236300 - L2 LINE L2 -1275 2039 1791 242 310 82 32 chr11 35547358 35547516 -113235956 - MER5B DNA MER1_type -2 176 11 647 256 93 0 chr11 35548871 35549043 -113234429 - MIR SINE MIR -72 190 3 398 257 43 14 chr11 35549182 35549322 -113234150 - MER103 DNA DNA -19 147 4 980 185 6 0 chr11 35549358 35549520 -113233952 + FRAM SINE Alu 1 163 -13 614 303 76 58 chr11 35550368 35550875 -113232597 - L1ME4a LINE L1 -260 5861 5361 202 290 32 0 chr11 35551283 35551345 -113232127 - L2 LINE L2 -1 3312 3249 605 78 0 206 chr11 35551862 35552003 -113231469 - AluSp/q SINE Alu -5 308 197 443 184 0 0 chr11 35552024 35552100 -113231372 + AluJb SINE Alu 205 280 -32 192 77 0 0 chr11 35552103 35552129 -113231343 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 1338 142 5 0 chr11 35552570 35552774 -113230698 - MER2 DNA MER2_type -135 210 6 1167 181 10 5 chr11 35553065 35553269 -113230203 + MER3 DNA MER1_type 5 209 0 696 264 7 0 chr11 35553409 35553564 -113229908 + MER112 DNA MER1_type 96 251 -9 552 222 103 118 chr11 35553633 35553842 -113229630 + L2 LINE L2 2922 3124 -189 2120 127 10 3 chr11 35553842 35554142 -113229330 - AluSx SINE Alu -8 304 3 552 222 103 118 chr11 35554142 35554329 -113229143 + L2 LINE L2 3124 3312 -1 1974 194 20 45 chr11 35554555 35554951 -113228521 - MER70A LTR ERVL 0 472 87 1640 143 94 45 chr11 35554951 35555238 -113228234 - AluSx SINE Alu -11 301 1 2207 114 7 3 chr11 35555629 35555919 -113227553 + AluSx SINE Alu 1 291 -21 489 34 0 0 chr11 35555923 35555982 -113227490 + (CATA)n Simple_repeat Simple_repeat 2 60 0 1899 166 23 0 chr11 35556290 35556592 -113226880 - AluJb SINE Alu -3 309 1 2471 205 14 34 chr11 35557914 35558479 -113224993 - L1MD3 LINE L1 -13 7982 7429 190 304 0 71 chr11 35559019 35559131 -113224341 - MIR SINE MIR -55 207 104 8472 115 22 19 chr11 35559522 35560165 -113223307 - HSMAR2 DNA Mariner -1 1301 662 1864 173 0 3 chr11 35560165 35560465 -113223007 - AluJo SINE Alu -13 299 1 8472 115 22 19 chr11 35560465 35561117 -113222355 - HSMAR2 DNA Mariner -640 662 1 1479 141 8 29 chr11 35561535 35561777 -113221695 + AluJo SINE Alu 59 295 -17 319 252 87 26 chr11 35562122 35562237 -113221235 + MER103 DNA DNA 1 122 -44 21 0 0 0 chr11 35562647 35562668 -113220804 + AT_rich Low_complexity Low_complexity 1 21 0 241 276 124 68 chr11 35562778 35563502 -113219970 - L1M4 LINE L1 -2420 3726 2962 14276 121 24 18 chr11 35563908 35566119 -113217353 + L1PB1 LINE L1 1 2223 -4640 6028 128 20 28 chr11 35566117 35566701 -113216771 + L1PB1 LINE L1 5518 6105 -762 * 2769 104 0 3 chr11 35566701 35567066 -113216406 + THE1B LTR MaLR 1 364 0 6028 128 20 28 chr11 35567066 35567834 -113215638 + L1PB1 LINE L1 6105 6860 -7 1842 180 3 0 chr11 35567917 35568212 -113215260 + AluJb SINE Alu 1 296 -16 521 338 38 4 chr11 35568286 35568523 -113214949 - MIR SINE MIR -1 261 17 2434 68 0 40 chr11 35568976 35569300 -113214172 + AluY SINE Alu 1 311 0 432 0 0 0 chr11 35569300 35569348 -113214124 + (TA)n Simple_repeat Simple_repeat 2 49 0 2018 131 10 7 chr11 35570055 35570361 -113213111 + AluSx SINE Alu 1 307 -5 358 285 54 54 chr11 35570919 35571105 -113212367 + MIR SINE MIR 21 206 -56 1036 200 27 22 chr11 35571276 35571501 -113211971 - MIR SINE MIR -10 252 27 1929 113 38 34 chr11 35572964 35573256 -113210216 - AluSq SINE Alu -20 293 1 2269 206 65 55 chr11 35573766 35574254 -113209218 - MLT1E LTR MaLR 0 593 97 1848 163 3 16 chr11 35574254 35574560 -113208912 + AluJb SINE Alu 1 302 -10 2269 206 65 55 chr11 35574560 35574658 -113208814 - MLT1E LTR MaLR -496 97 1 1777 236 92 14 chr11 35575026 35575535 -113207937 - MLT1G LTR MaLR 0 590 42 286 274 11 21 chr11 35575594 35575689 -113207783 - L3 LINE CR1 -1 1576 1483 * 489 363 91 18 chr11 35575686 35576297 -113207175 + L2 LINE L2 2593 3254 -18 207 100 0 0 chr11 35576307 35576337 -113207135 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 427 343 17 11 chr11 35576380 35576561 -113206911 - L3 LINE CR1 -124 1453 1272 2380 112 21 24 chr11 35576815 35577191 -113206281 - THE1C LTR MaLR 0 375 1 242 324 65 29 chr11 35577325 35577464 -113206008 - L3 LINE CR1 -449 1128 985 294 378 67 18 chr11 35577686 35578017 -113205455 - L3 LINE CR1 -579 998 652 180 77 0 0 chr11 35578510 35578536 -113204936 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 627 301 0 19 chr11 35578541 35578750 -113204722 - MLT1I LTR MaLR -204 205 1 206 355 56 89 chr11 35578888 35579102 -113204370 - L3 LINE CR1 -972 605 399 1166 183 5 27 chr11 35584316 35584540 -113198932 + MER20 DNA MER1_type 1 219 0 301 276 161 65 chr11 35585199 35585554 -113197918 + L2 LINE L2 2379 2767 -547 1877 155 17 46 chr11 35585577 35585926 -113197546 - MER44D DNA MER2_type 0 609 1 223 317 41 41 chr11 35585945 35586090 -113197382 + L2 LINE L2 2916 3060 -212 2156 109 7 0 chr11 35586982 35587267 -113196205 + AluSx SINE Alu 1 287 -25 1417 221 51 71 chr11 35587925 35588418 -113195054 + MER113 DNA MER1_type? 6 488 -33 2019 160 0 3 chr11 35588585 35588898 -113194574 + AluJb SINE Alu 1 312 0 752 196 0 7 chr11 35588934 35589087 -113194385 + L1MB3 LINE L1 6029 6180 -3 22 35 0 0 chr11 35589169 35589198 -113194274 + AT_rich Low_complexity Low_complexity 1 29 0 459 0 0 0 chr11 35591517 35591568 -113191904 + (CA)n Simple_repeat Simple_repeat 2 52 0 535 241 96 6 chr11 35591577 35591743 -113191729 - MIR SINE MIR -16 246 66 858 165 0 0 chr11 35592028 35592161 -113191311 - AluJo SINE Alu -177 135 3 182 292 0 0 chr11 35592623 35592671 -113190801 - L2 LINE L2 -4 3268 3221 1146 284 159 14 chr11 35593213 35593717 -113189755 - MLT1K LTR MaLR -4 584 8 4995 167 26 46 chr11 35594008 35595756 -113187716 + L1MB4 LINE L1 4462 6180 0 1958 151 3 7 chr11 35595848 35596152 -113187320 - AluJo SINE Alu -9 303 1 22 35 0 0 chr11 35596214 35596243 -113187229 + AT_rich Low_complexity Low_complexity 1 29 0 1672 181 0 0 chr11 35596478 35596754 -113186718 + AluJo SINE Alu 11 286 -26 675 118 0 0 chr11 35596871 35596973 -113186499 + L1MA4A LINE L1 6189 6290 -13 228 292 8 25 chr11 35597313 35597433 -113186039 - LTR33 LTR ERVL -403 118 1 2250 107 10 13 chr11 35597692 35598001 -113185471 - AluSx SINE Alu -4 308 1 784 257 63 8 chr11 35598234 35598471 -113185001 + MIR SINE MIR 13 262 0 561 248 25 28 chr11 35599034 35599227 -113184245 - MIR SINE MIR -55 207 3 304 214 0 0 chr11 35599859 35599929 -113183543 - MIR SINE MIR -3 259 190 600 212 18 0 chr11 35600351 35600464 -113183008 + FLAM_A SINE Alu 1 115 -18 2152 154 16 24 chr11 35601255 35601535 -113181937 - MLT1B LTR MaLR 0 390 112 2325 110 0 7 chr11 35601535 35601844 -113181628 - AluSq SINE Alu -6 307 1 2152 154 16 24 chr11 35601844 35601939 -113181533 - MLT1B LTR MaLR -278 112 18 1937 135 44 14 chr11 35601939 35602235 -113181237 + AluSx SINE Alu 1 305 -7 340 325 0 16 chr11 35603566 35603692 -113179780 + MIR3 SINE MIR 54 177 -31 392 258 126 25 chr11 35604243 35604441 -113179031 - MIR SINE MIR -25 237 20 23 33 0 0 chr11 35604569 35604599 -113178873 + AT_rich Low_complexity Low_complexity 1 30 0 1795 158 24 0 chr11 35604599 35604890 -113178582 + AluJb SINE Alu 1 298 -14 691 158 55 0 chr11 35604893 35605020 -113178452 - L1MB4 LINE L1 -2 6178 6045 330 250 30 89 chr11 35606108 35606276 -113177196 - MIR SINE MIR -37 225 68 546 217 130 31 chr11 35606645 35606806 -113176666 + MIR SINE MIR 20 196 -66 954 278 173 7 chr11 35607606 35608027 -113175445 + LTR16C LTR ERVL 1 491 0 189 100 0 0 chr11 35608848 35608870 -113174602 + (TC)n Simple_repeat Simple_repeat 1 25 -5 2315 108 0 0 chr11 35608870 35609165 -113174307 - AluSg SINE Alu -15 295 1 189 100 0 0 chr11 35609165 35609172 -113174300 + (TC)n Simple_repeat Simple_repeat 24 30 0 371 257 164 23 chr11 35609647 35609818 -113173654 + L1ME4a LINE L1 5386 5580 -541 2158 112 0 0 chr11 35609866 35610142 -113173330 + AluSc SINE Alu 1 276 -33 2268 141 76 5 chr11 35610267 35610664 -113172808 - MSTA LTR MaLR -3 425 1 449 264 16 0 chr11 35610694 35610823 -113172649 - MER103 DNA DNA -1 165 35 2306 114 0 0 chr11 35610903 35611200 -113172272 - AluSx SINE Alu -15 297 1 2783 191 59 12 chr11 35611360 35612009 -113171463 - L1ME2 LINE L1 -196 5968 5290 481 300 41 27 chr11 35612290 35612510 -113170962 - L1ME3A LINE L1 -273 5897 5675 231 216 147 20 chr11 35612704 35612806 -113170666 + L1ME4a LINE L1 5708 5822 -299 386 270 68 21 chr11 35612847 35613084 -113170388 + L1ME4a LINE L1 5874 6121 0 327 256 64 48 chr11 35614401 35614526 -113168946 - MIR SINE MIR -126 136 10 725 281 215 45 chr11 35615441 35616520 -113166952 - L2 LINE L2 -686 2628 1366 267 243 213 30 chr11 35616617 35616786 -113166686 + L2 LINE L2 466 665 -2649 211 356 84 21 chr11 35617302 35617493 -113165979 + L2 LINE L2 2583 2785 -529 588 294 16 33 chr11 35617897 35618142 -113165330 + MIR SINE MIR 10 250 -12 2203 123 7 0 chr11 35619155 35619465 -113164007 + AluSx SINE Alu 1 312 0 1121 239 31 59 chr11 35619523 35619979 -113163493 - L2 LINE L2 0 3313 2871 315 0 0 0 chr11 35620261 35620296 -113163176 + (TG)n Simple_repeat Simple_repeat 2 36 0 249 204 0 0 chr11 35620393 35620447 -113163025 + MIR SINE MIR 104 157 -105 201 244 0 0 chr11 35620456 35620501 -113162971 + L2 LINE L2 3210 3254 -18 367 173 105 83 chr11 35621451 35621584 -113161888 - L1ME2 LINE L1 -62 6102 5967 443 91 0 0 chr11 35621985 35622051 -113161421 - MIR SINE MIR -118 144 79 393 208 115 0 chr11 35622562 35622658 -113160814 - MIR SINE MIR -46 216 110 331 292 153 42 chr11 35622677 35622789 -113160683 - MIR3 SINE MIR -28 180 47 1758 176 64 9 chr11 35622789 35623135 -113160337 + MLT1A1 LTR MaLR 1 365 0 331 292 153 42 chr11 35623135 35623166 -113160306 - MIR3 SINE MIR -161 47 21 277 257 50 93 chr11 35623482 35623622 -113159850 - MIR SINE MIR -64 198 65 2478 87 3 0 chr11 35624100 35624409 -113159063 + AluSp SINE Alu 1 310 -3 552 260 0 13 chr11 35625620 35625774 -113157698 + MIR SINE MIR 72 223 -39 546 213 81 12 chr11 35625879 35626039 -113157433 + MIR SINE MIR 92 262 0 519 185 35 40 chr11 35626254 35626422 -113157050 + MIR SINE MIR 33 198 -61 576 301 29 10 chr11 35626835 35627044 -113156428 + MIR SINE MIR 11 223 -39 7251 24 12 2 chr11 35627921 35628773 -113154699 + L1PA4 LINE L1 5285 6144 -11 633 195 6 198 chr11 35628918 35629241 -113154231 - MIR SINE MIR 0 262 2 249 242 45 0 chr11 35629603 35629669 -113153803 - MIR SINE MIR -112 150 82 229 320 107 8 chr11 35630845 35630967 -113152505 - L2 LINE L2 -190 3082 2949 236 402 66 4 chr11 35631043 35631287 -113152185 - L2 LINE L2 -462 2852 2594 2263 273 90 36 chr11 35631411 35632012 -113151460 - L2 LINE L2 -5 3308 2741 1663 167 3 30 chr11 35632012 35632311 -113151161 + AluJo SINE Alu 1 291 -21 2263 273 90 36 chr11 35632311 35632985 -113150487 - L2 LINE L2 -572 2741 1969 1171 254 53 60 chr11 35633111 35633545 -113149927 - MLT1H LTR MaLR 0 549 119 2260 111 0 7 chr11 35634095 35634392 -113149080 - AluSx SINE Alu -17 295 1 1990 123 14 7 chr11 35635318 35635603 -113147869 + AluSx SINE Alu 1 287 -25 598 245 36 0 chr11 35635940 35636079 -113147393 + MER103 DNA DNA 8 151 -15 245 241 19 0 chr11 35636227 35636281 -113147191 + G-rich Low_complexity Low_complexity 5 59 0 250 340 56 15 chr11 35636683 35636882 -113146590 + MIR SINE MIR 35 242 -20 354 23 0 0 chr11 35637050 35637093 -113146379 + (TG)n Simple_repeat Simple_repeat 2 44 0 252 86 0 0 chr11 35638358 35638393 -113145079 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 227 30 0 30 chr11 35639411 35639444 -113144028 + (TTCC)n Simple_repeat Simple_repeat 3 34 0 749 310 105 21 chr11 35642025 35642388 -113141084 - L2 LINE L2 -1 3312 2981 2537 62 10 0 chr11 35642388 35642694 -113140778 + AluSq SINE Alu 1 309 -4 749 310 105 21 chr11 35642694 35642953 -113140519 - L2 LINE L2 -332 2981 2619 1962 231 61 32 chr11 35642962 35643157 -113140315 - MLT1F LTR MaLR 0 542 354 4522 98 18 15 chr11 35643157 35643823 -113139649 + L1PB2 LINE L1 5483 6150 -1 1962 231 61 32 chr11 35643823 35644014 -113139458 - MLT1F LTR MaLR -188 354 135 396 0 0 0 chr11 35644014 35644058 -113139414 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1962 231 61 32 chr11 35644058 35644197 -113139275 - MLT1F LTR MaLR -407 135 1 383 281 59 22 chr11 35646783 35646918 -113136554 - MIR3 SINE MIR -54 154 15 735 216 159 24 chr11 35646949 35647157 -113136315 + MIR SINE MIR 6 241 -21 231 36 0 0 chr11 35647158 35647186 -113136286 + (ATG)n Simple_repeat Simple_repeat 2 29 0 197 293 86 0 chr11 35649302 35649360 -113134112 - L2 LINE L2 -1 3312 3250 219 313 16 0 chr11 35649419 35649483 -113133989 - L2 LINE L2 -71 3201 3137 1249 162 50 5 chr11 35649607 35649928 -113133544 - MSTD LTR MaLR 0 396 2 1001 123 0 0 chr11 35651282 35651420 -113132052 - FLAM_C SINE Alu -5 138 1 335 68 23 0 chr11 35651422 35651466 -113132006 - MSTA LTR MaLR -9 419 375 5471 115 9 1 chr11 35651466 35652276 -113131196 - L1PA14 LINE L1 0 6161 5346 1761 128 196 6 chr11 35652276 35652603 -113130869 - MSTA LTR MaLR -39 389 1 226 315 168 30 chr11 35652794 35652991 -113130481 + LTR16C LTR ERVL 11 234 -257 1221 198 23 48 chr11 35653024 35653340 -113130132 + MER74A LTR ERVL 1 225 -235 695 130 22 87 chr11 35653344 35653395 -113130077 + MER74A LTR ERVL 430 483 -75 486 0 0 0 chr11 35653395 35653449 -113130023 + (TA)n Simple_repeat Simple_repeat 2 55 0 2206 99 0 40 chr11 35653452 35653774 -113129698 - AluSc SINE Alu 0 309 1 695 130 22 87 chr11 35653774 35653856 -113129616 + MER74A LTR ERVL 485 558 0 793 264 15 0 chr11 35653856 35654053 -113129419 + LTR16C LTR ERVL 282 481 -10 1594 246 67 9 chr11 35654920 35655351 -113128121 - MLT1K LTR MaLR -4 584 129 1707 158 24 7 chr11 35655723 35656014 -113127458 + AluJb SINE Alu 4 299 -13 957 286 75 48 chr11 35656668 35656822 -113126650 - L1MEd LINE L1 -4649 1566 1418 8176 27 0 0 chr11 35656822 35658376 -113125096 - L1PA4 LINE L1 0 6155 4601 957 286 75 48 chr11 35658376 35659043 -113124429 - L1MEd LINE L1 -4797 1418 778 838 158 0 0 chr11 35659075 35659202 -113124270 - FLAM_C SINE Alu -16 127 1 407 262 58 62 chr11 35659257 35659482 -113123990 - L1MEd LINE L1 -5444 675 452 487 184 158 9 chr11 35659549 35659663 -113123809 - Charlie4 DNA MER1_type -13 1948 1818 564 233 73 18 chr11 35660146 35660331 -113123141 + L1MC4a LINE L1 5721 5925 -239 196 219 0 0 chr11 35660855 35660896 -113122576 + L2 LINE L2 3214 3254 -18 838 244 109 9 chr11 35661502 35661731 -113121741 + MIR SINE MIR 9 260 -2 940 161 7 7 chr11 35661743 35661892 -113121580 + MLT1A1 LTR MaLR 171 319 -46 233 354 52 0 chr11 35661903 35661999 -113121473 - L2 LINE L2 -1 3271 3171 2289 111 0 0 chr11 35661999 35662296 -113121176 - AluSx SINE Alu -14 298 2 2089 198 59 86 chr11 35662353 35662910 -113120562 - MLT1F LTR MaLR 0 542 1 531 188 0 0 chr11 35663361 35663478 -113119994 + (TCCA)n Simple_repeat Simple_repeat 2 118 0 216 0 0 0 chr11 35663526 35663550 -113119922 + (CA)n Simple_repeat Simple_repeat 1 24 0 587 253 62 10 chr11 35663563 35663757 -113119715 + L2 LINE L2 3107 3310 -3 30 0 0 0 chr11 35663961 35663991 -113119481 + AT_rich Low_complexity Low_complexity 1 30 0 1065 67 22 15 chr11 35663991 35664126 -113119346 - L1PA8 LINE L1 -9 6163 6028 380 172 69 35 chr11 35664978 35665094 -113118378 + L1ME4a LINE L1 5991 6110 -11 1635 187 0 27 chr11 35666178 35666502 -113116970 + AluJo SINE Alu 1 312 0 367 240 86 15 chr11 35667821 35667957 -113115515 - MIR SINE MIR -54 154 3 498 25 114 101 chr11 35668185 35668228 -113115244 - MADE1 DNA Mariner 0 80 39 2302 87 0 3 chr11 35668228 35668517 -113114955 + AluY SINE Alu 1 288 -23 252 0 0 0 chr11 35668517 35668545 -113114927 + (TATG)n Simple_repeat Simple_repeat 1 28 0 498 25 114 101 chr11 35668545 35668579 -113114893 - MADE1 DNA Mariner -40 40 1 417 330 6 29 chr11 35669285 35669458 -113114014 + L3 LINE CR1 920 1088 -489 2452 50 0 0 chr11 35670710 35671033 -113112439 + AluY SINE Alu 1 323 0 688 161 253 0 chr11 35671156 35671318 -113112154 - MER3 DNA MER1_type 0 209 7 1811 179 0 3 chr11 35672317 35672614 -113110858 - AluJb SINE Alu -16 296 1 255 219 31 73 chr11 35673609 35673705 -113109767 - L2 LINE L2 -208 3064 2973 789 247 105 37 chr11 35673728 35674286 -113109186 + MER115 DNA AcHobo 58 693 0 2814 10 0 0 chr11 35675582 35675884 -113107588 + AluYa5 SINE Alu 1 302 -9 403 200 100 8 chr11 35676809 35676929 -113106543 + L1ME4a LINE L1 5974 6104 -17 316 267 212 9 chr11 35677152 35677369 -113106103 - MIR SINE MIR 0 262 2 763 293 39 26 chr11 35677575 35677804 -113105668 - MIR SINE MIR 0 262 31 459 331 19 19 chr11 35678493 35678647 -113104825 + MIR SINE MIR 1 154 -108 306 205 152 45 chr11 35678648 35678736 -113104736 + MER104 DNA Tc2 2 106 -1792 1577 176 41 14 chr11 35678736 35679031 -113104441 - AluJb SINE Alu -9 303 1 306 205 152 45 chr11 35679031 35679054 -113104418 + MER104 DNA Tc2 106 125 -55 22 0 0 0 chr11 35679235 35679257 -113104215 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr11 35679359 35679383 -113104089 + AT_rich Low_complexity Low_complexity 1 24 0 629 286 49 27 chr11 35679889 35680113 -113103359 - MIR SINE MIR -14 248 20 214 349 77 59 chr11 35680197 35680366 -113103106 - L2 LINE L2 0 3272 3101 405 58 0 0 chr11 35680367 35680419 -113103053 + (TG)n Simple_repeat Simple_repeat 1 52 0 251 342 35 40 chr11 35680534 35680733 -113102739 + L2 LINE L2 2638 2835 -479 247 264 65 89 chr11 35680802 35680946 -113102526 + L2 LINE L2 2867 3004 -268 2273 107 10 3 chr11 35680946 35681256 -113102216 - AluSx SINE Alu 0 312 1 247 264 65 89 chr11 35681256 35681357 -113102115 + L2 LINE L2 3004 3106 -166 2563 62 9 0 chr11 35681554 35681892 -113101580 + L1PA6 LINE L1 4799 5139 -1007 7506 62 5 1 chr11 35682017 35683029 -113100443 + L1PA6 LINE L1 5135 6149 -5 4916 168 29 10 chr11 35684934 35686341 -113097131 - L1MB7 LINE L1 -15 6169 4734 1352 144 57 84 chr11 35686357 35686656 -113096816 - AluJb SINE Alu -21 291 1 848 154 16 0 chr11 35686897 35687020 -113096452 - FLAM_A SINE Alu -8 125 1 335 258 245 0 chr11 35687818 35687981 -113095491 - MLT1J LTR MaLR -50 461 259 1304 191 92 31 chr11 35688029 35688323 -113095149 - AluJo SINE Alu 0 312 1 542 275 164 0 chr11 35688323 35688512 -113094960 - MLT1J LTR MaLR -291 220 1 493 324 77 69 chr11 35689052 35689401 -113094071 - L2 LINE L2 -1 3271 2920 2349 167 32 2 chr11 35689751 35690159 -113093313 - MSTB LTR MaLR -6 420 1 585 321 40 18 chr11 35690445 35690669 -113092803 + MIR SINE MIR 20 248 -14 858 209 6 18 chr11 35691310 35691473 -113091999 + FRAM SINE Alu 1 158 -18 1724 153 10 48 chr11 35691473 35691786 -113091686 + AluJo SINE Alu 1 301 -11 633 289 186 27 chr11 35692358 35692911 -113090561 + L2 LINE L2 2672 3313 0 297 51 0 0 chr11 35693406 35693445 -113090027 + (CA)n Simple_repeat Simple_repeat 1 39 0 362 309 112 78 chr11 35693477 35693746 -113089726 + L2 LINE L2 2988 3265 -7 186 43 0 0 chr11 35693754 35693777 -113089695 + (CA)n Simple_repeat Simple_repeat 1 23 0 274 186 57 0 chr11 35694562 35694632 -113088840 - MIR SINE MIR -41 221 148 21 0 0 0 chr11 35694632 35694653 -113088819 + AT_rich Low_complexity Low_complexity 1 21 0 580 82 0 0 chr11 35694655 35694728 -113088744 - AluSc SINE Alu -27 282 210 867 76 0 0 chr11 35694728 35694833 -113088639 - AluSc SINE Alu -204 105 1 495 189 85 28 chr11 35694835 35694941 -113088531 - MIR SINE MIR -102 160 49 180 0 0 0 chr11 35695947 35695967 -113087505 + (TG)n Simple_repeat Simple_repeat 1 20 0 1456 248 163 16 chr11 35695986 35696478 -113086994 - L1ME1 LINE L1 -5 6161 5598 320 145 16 0 chr11 35697236 35697298 -113086174 - L1PA15 LINE L1 -5 6160 6098 489 323 80 10 chr11 35697899 35698299 -113085173 - L1ME1 LINE L1 -1645 4501 4074 1978 135 10 7 chr11 35698472 35698768 -113084704 - AluSx SINE Alu -12 300 4 306 285 15 39 chr11 35698908 35699038 -113084434 + CT-rich Low_complexity Low_complexity 2 128 0 2202 165 40 3 chr11 35699472 35699823 -113083649 + THE1B LTR MaLR 1 364 0 683 311 21 8 chr11 35700330 35700571 -113082901 + MIR SINE MIR 15 258 -4 26 0 0 0 chr11 35701370 35701396 -113082076 + AT_rich Low_complexity Low_complexity 1 26 0 3833 124 38 5 chr11 35701427 35702040 -113081432 - L1MA8 LINE L1 -18 6273 5641 1465 138 13 4 chr11 35702037 35702262 -113081210 + L1MA8 LINE L1 5431 5657 -655 * 21 0 0 0 chr11 35702446 35702467 -113081005 + AT_rich Low_complexity Low_complexity 1 21 0 204 40 0 0 chr11 35703302 35703327 -113080145 + (T)n Simple_repeat Simple_repeat 1 25 0 672 251 37 25 chr11 35703510 35703673 -113079799 - MER5B DNA MER1_type -12 166 2 253 318 100 9 chr11 35703889 35703999 -113079473 + MIR SINE MIR 27 146 -62 807 292 22 13 chr11 35704386 35704612 -113078860 - MIR SINE MIR 0 262 35 325 299 100 30 chr11 35704692 35704837 -113078635 - MIR SINE MIR -88 120 19 240 191 0 0 chr11 35704876 35704923 -113078549 - MIR SINE MIR -56 206 160 1433 246 107 26 chr11 35704965 35705015 -113078457 - MLT1J1 LTR MaLR -12 434 390 1529 191 48 94 chr11 35705015 35705407 -113078065 - MLT1A2 LTR MaLR 0 374 1 1433 246 107 26 chr11 35705407 35705747 -113077725 - MLT1J1 LTR MaLR -56 390 12 528 311 51 51 chr11 35705787 35706022 -113077450 - MIR SINE MIR -15 247 13 196 231 26 0 chr11 35706049 35706088 -113077384 + MIR SINE MIR 38 77 -131 1674 162 79 4 chr11 35706227 35706505 -113076967 - AluJb SINE Alu -13 299 1 562 247 160 0 chr11 35706681 35706831 -113076641 - MER5A DNA MER1_type -5 184 11 319 303 107 0 chr11 35706953 35707075 -113076397 + L2 LINE L2 3136 3270 -2 2033 132 3 3 chr11 35707988 35708276 -113075196 + AluSx SINE Alu 2 289 -23 948 153 101 48 chr11 35709052 35709344 -113074128 + MSTD LTR MaLR 1 361 -34 453 206 15 132 chr11 35709810 35709946 -113073526 + MER5B DNA MER1_type 59 178 0 180 0 0 0 chr11 35710986 35711006 -113072466 + (TTA)n Simple_repeat Simple_repeat 2 21 0 7492 18 0 0 chr11 35711028 35711866 -113071606 - L1PA3 LINE L1 0 6155 5318 2122 101 3 3 chr11 35711879 35712165 -113071307 - AluSx SINE Alu -26 286 1 720 282 86 83 chr11 35712568 35713200 -113070272 + L2 LINE L2 2640 3293 -20 367 239 44 53 chr11 35713786 35713899 -113069573 + MIR SINE MIR 28 139 -123 1418 142 0 26 chr11 35713909 35714135 -113069337 + AluJo SINE Alu 1 220 -92 779 229 125 39 chr11 35714329 35714706 -113068766 - MLT1G LTR MaLR -104 486 1 359 248 107 16 chr11 35715323 35715444 -113068028 + L2 LINE L2 3179 3310 -3 269 339 83 21 chr11 35715506 35715698 -113067774 - L3 LINE CR1 -703 874 671 243 279 19 67 chr11 35715671 35715775 -113067697 - L2 LINE L2 -3 3269 3171 * 287 263 184 26 chr11 35716090 35716204 -113067268 - MIR SINE MIR -111 151 20 280 244 33 33 chr11 35716205 35716295 -113067177 + MIR SINE MIR 167 256 -6 1489 140 16 8 chr11 35716456 35716713 -113066759 + L1MA4 LINE L1 6042 6300 0 21 0 0 0 chr11 35716740 35716761 -113066711 + AT_rich Low_complexity Low_complexity 1 21 0 370 275 57 33 chr11 35717347 35717558 -113065914 - L2 LINE L2 -1 3312 3097 969 221 74 5 chr11 35717618 35717835 -113065637 - MIR SINE MIR 0 262 31 528 279 54 58 chr11 35718599 35718839 -113064633 + MIR SINE MIR 3 241 -21 1958 204 84 51 chr11 35718864 35719412 -113064060 - L1ME3A LINE L1 -5 6165 5600 2306 85 7 3 chr11 35719882 35720175 -113063297 + AluSx SINE Alu 1 294 -18 324 265 103 97 chr11 35720226 35720334 -113063138 - MIR SINE MIR -4 258 152 294 29 0 0 chr11 35720334 35720369 -113063103 + (TTCCC)n Simple_repeat Simple_repeat 1 35 0 2168 137 0 0 chr11 35720370 35720670 -113062802 - AluSx SINE Alu -12 300 1 1984 147 3 0 chr11 35720675 35720968 -113062504 - AluJb SINE Alu -18 294 1 324 265 103 97 chr11 35720968 35721036 -113062436 - MIR SINE MIR -113 149 73 833 241 38 83 chr11 35721778 35722044 -113061428 - MIR SINE MIR -1 261 8 1658 161 45 7 chr11 35722346 35722632 -113060840 + AluJo SINE Alu 1 297 -15 1093 192 186 39 chr11 35723035 35723425 -113060047 - MER110A LTR ERV1 0 468 53 181 286 179 0 chr11 35723568 35723652 -113059820 + MIR SINE MIR 158 256 -6 336 280 55 55 chr11 35723721 35723921 -113059551 - LTR67 LTR ERVL -4 553 354 390 311 34 14 chr11 35724706 35724854 -113058618 + MIR3 SINE MIR 35 185 -23 181 104 0 42 chr11 35726032 35726080 -113057392 + (TC)n Simple_repeat Simple_repeat 1 46 0 1980 127 0 4 chr11 35726114 35726389 -113057083 - AluSx SINE Alu -38 274 1 195 270 90 0 chr11 35727267 35727356 -113056116 + MIR SINE MIR 140 236 -26 512 314 92 21 chr11 35727618 35727857 -113055615 + MIR SINE MIR 1 256 -6 1874 147 7 0 chr11 35728337 35728623 -113054849 - AluJb SINE Alu -24 288 1 498 332 97 5 chr11 35728629 35728825 -113054647 - MIR SINE MIR -36 226 13 211 312 21 21 chr11 35729402 35729495 -113053977 + CT-rich Low_complexity Low_complexity 3 95 0 246 239 56 14 chr11 35731776 35731847 -113051625 + MIR3 SINE MIR 88 161 -47 376 299 52 8 chr11 35731905 35732039 -113051433 - MER117 DNA MER1_type -26 171 32 2903 10 0 0 chr11 35732042 35732353 -113051119 - AluY SINE Alu 0 311 1 653 168 97 38 chr11 35733574 35733759 -113049713 + L1MC5 LINE L1 7331 7526 -435 2314 112 0 0 chr11 35733765 35734069 -113049403 + AluSg1 SINE Alu 4 307 -2 262 357 48 16 chr11 35734192 35734318 -113049154 - MIR SINE MIR -60 148 19 1412 158 17 33 chr11 35734699 35734939 -113048533 - MER46A DNA MER2_type 0 236 1 2255 203 17 25 chr11 35735853 35736332 -113047140 - L1MA10 LINE L1 0 6334 5860 504 0 0 0 chr11 35736587 35736643 -113046829 + (CA)n Simple_repeat Simple_repeat 2 57 0 1666 158 3 37 chr11 35736783 35737081 -113046391 + AluJo SINE Alu 1 288 -24 896 260 17 22 chr11 35737189 35737420 -113046052 + MIR SINE MIR 14 243 -19 198 250 45 0 chr11 35737430 35737474 -113045998 + L2 LINE L2 3224 3269 -3 863 115 14 36 chr11 35738532 35738671 -113044801 + AluJo SINE Alu 17 152 -160 354 23 0 0 chr11 35788846 35788889 -112994583 + (TG)n Simple_repeat Simple_repeat 2 44 0 252 86 0 0 chr11 35790154 35790189 -112993283 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 227 30 0 30 chr11 35791207 35791240 -112992232 + (TTCC)n Simple_repeat Simple_repeat 3 34 0 749 310 105 21 chr11 35793821 35794184 -112989288 - L2 LINE L2 -1 3312 2981 2537 62 10 0 chr11 35794184 35794490 -112988982 + AluSq SINE Alu 1 309 -4 749 310 105 21 chr11 35794490 35794749 -112988723 - L2 LINE L2 -332 2981 2619 1962 231 61 32 chr11 35794758 35794953 -112988519 - MLT1F LTR MaLR 0 542 354 4522 98 18 15 chr11 35794953 35795619 -112987853 + L1PB2 LINE L1 5483 6150 -1 1962 231 61 32 chr11 35795619 35795810 -112987662 - MLT1F LTR MaLR -188 354 135 396 0 0 0 chr11 35795810 35795854 -112987618 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 1962 231 61 32 chr11 35795854 35795993 -112987479 - MLT1F LTR MaLR -407 135 1 383 281 59 22 chr11 35798579 35798714 -112984758 - MIR3 SINE MIR -54 154 15 735 216 159 24 chr11 35798745 35798953 -112984519 + MIR SINE MIR 6 241 -21 231 36 0 0 chr11 35798954 35798982 -112984490 + (ATG)n Simple_repeat Simple_repeat 2 29 0 197 293 86 0 chr11 35801098 35801156 -112982316 - L2 LINE L2 -1 3312 3250 219 313 16 0 chr11 35801215 35801279 -112982193 - L2 LINE L2 -71 3201 3137 1249 162 50 5 chr11 35801403 35801724 -112981748 - MSTD LTR MaLR 0 396 2 1001 123 0 0 chr11 35803078 35803216 -112980256 - FLAM_C SINE Alu -5 138 1 335 68 23 0 chr11 35803218 35803262 -112980210 - MSTA LTR MaLR -9 419 375 5471 115 9 1 chr11 35803262 35804072 -112979400 - L1PA14 LINE L1 0 6161 5346 1761 128 196 6 chr11 35804072 35804399 -112979073 - MSTA LTR MaLR -39 389 1 226 315 168 30 chr11 35804590 35804787 -112978685 + LTR16C LTR ERVL 11 234 -257 1221 198 23 48 chr11 35804820 35805136 -112978336 + MER74A LTR ERVL 1 225 -235 692 130 22 87 chr11 35805140 35805191 -112978281 + MER74A LTR ERVL 430 483 -75 486 0 0 0 chr11 35805191 35805245 -112978227 + (TA)n Simple_repeat Simple_repeat 2 55 0 2206 99 0 40 chr11 35805248 35805570 -112977902 - AluSc SINE Alu 0 309 1 692 130 22 87 chr11 35805570 35805652 -112977820 + MER74A LTR ERVL 485 558 0 793 259 15 0 chr11 35805652 35805849 -112977623 + LTR16C LTR ERVL 282 481 -10 1604 246 67 9 chr11 35806716 35807147 -112976325 - MLT1K LTR MaLR -4 584 129 1720 158 24 7 chr11 35807519 35807810 -112975662 + AluJb SINE Alu 4 299 -13 903 253 147 9 chr11 35808115 35808435 -112975037 + L2 LINE L2 2931 3294 -19 208 167 0 0 chr11 35808404 35808440 -112975032 + MIR SINE MIR 219 254 -8 * 1037 119 12 0 chr11 35808449 35808617 -112974855 + (TGGA)n Simple_repeat Simple_repeat 1 170 0 450 312 41 12 chr11 35811156 35811326 -112972146 - MIR SINE MIR -8 254 80 180 152 0 0 chr11 35811814 35811847 -112971625 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 909 240 111 11 chr11 35814716 35814987 -112968485 - LTR16A LTR ERVL -98 352 55 21 0 0 0 chr11 35815393 35815414 -112968058 + AT_rich Low_complexity Low_complexity 1 21 0 43641 31 23 5 chr11 35815418 35821465 -112962007 - L1PA3 LINE L1 0 6155 3 422 302 97 58 chr11 35821945 35822080 -112961392 + L2 LINE L2 2842 2970 -302 878 210 33 23 chr11 35822080 35822294 -112961178 - MER20 DNA MER1_type -3 216 1 422 302 97 58 chr11 35822294 35822572 -112960900 + L2 LINE L2 2970 3271 -1 304 313 96 48 chr11 35822843 35823175 -112960297 - MLT1K LTR MaLR -156 432 85 1461 185 38 24 chr11 35823244 35823407 -112960065 - AluJo SINE Alu -10 292 122 207 0 0 0 chr11 35823407 35823430 -112960042 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1461 185 38 24 chr11 35823430 35823553 -112959919 - AluJo SINE Alu -180 122 2 2012 114 0 78 chr11 35823627 35823961 -112959511 - AluSq SINE Alu -5 308 1 656 247 7 6 chr11 35824431 35824603 -112958869 + MIR SINE MIR 49 216 -46 2190 116 0 0 chr11 35824693 35825002 -112958470 - AluSx SINE Alu 0 309 1 284 217 217 11 chr11 35826442 35826534 -112956938 - L2 LINE L2 0 3313 3203 2410 195 84 56 chr11 35826534 35827006 -112956466 + MER44D DNA MER2_type 13 385 -2102 1981 123 63 0 chr11 35827006 35827290 -112956182 - AluSx SINE Alu -10 302 1 2410 195 84 56 chr11 35827290 35827515 -112955957 + MER44D DNA MER2_type 385 602 -3 382 274 181 7 chr11 35827520 35827797 -112955675 - L2 LINE L2 -112 3201 2877 489 276 214 27 chr11 35827801 35828187 -112955285 + L2 LINE L2 2428 2740 -532 1858 142 55 85 chr11 35828187 35828589 -112954883 - MLT1B LTR MaLR 0 390 1 489 276 214 27 chr11 35828589 35828737 -112954735 + L2 LINE L2 2740 3071 -201 3238 204 88 30 chr11 35828773 35829074 -112954398 - L1ME2 LINE L1 -19 6145 5863 308 43 22 0 chr11 35829074 35829120 -112954352 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 3238 204 88 30 chr11 35829120 35829752 -112953720 - L1ME2 LINE L1 -301 5863 5150 355 254 82 99 chr11 35830094 35830192 -112953280 + L1ME4a LINE L1 5583 5681 -440 2295 108 0 0 chr11 35830192 35830499 -112952973 - AluSx SINE Alu -5 307 1 355 254 82 99 chr11 35830499 35830775 -112952697 + L1ME4a LINE L1 5681 5963 -158 206 207 17 0 chr11 35830786 35830844 -112952628 + (TA)n Simple_repeat Simple_repeat 1 59 0 443 199 48 41 chr11 35831284 35831430 -112952042 + L1ME4a LINE L1 5956 6102 -19 271 313 82 14 chr11 35831874 35832021 -112951451 - L2 LINE L2 0 3272 3116 189 222 8 167 chr11 35832016 35832142 -112951330 - MIR SINE MIR 0 262 157 * 558 0 0 0 chr11 35832232 35832294 -112951178 + (TA)n Simple_repeat Simple_repeat 1 62 0 729 292 86 0 chr11 35832294 35832527 -112950945 + MIR SINE MIR 10 262 0 291 333 48 8 chr11 35832543 35832669 -112950803 + L2 LINE L2 3137 3267 -5 293 291 29 29 chr11 35832825 35832928 -112950544 - MIR3 SINE MIR -43 165 63 1953 185 98 49 chr11 35832991 35833500 -112949972 - LTR10A LTR ERV1 -61 548 15 287 231 213 28 chr11 35834351 35834459 -112949013 + MIR3 SINE MIR 65 192 -16 21 36 0 0 chr11 35834767 35834795 -112948677 + AT_rich Low_complexity Low_complexity 1 28 0 482 183 111 8 chr11 35835202 35835328 -112948144 - MIR SINE MIR -26 236 98 531 176 0 0 chr11 35835729 35835820 -112947652 - MER5A DNA MER1_type 0 189 99 500 286 138 35 chr11 35837067 35837138 -112946334 + MIR SINE MIR 4 66 -196 2307 121 43 88 chr11 35837138 35837602 -112945870 + MER65A LTR ERV1 3 445 0 500 286 138 35 chr11 35837602 35837761 -112945711 + MIR SINE MIR 66 258 -4 1849 174 30 0 chr11 35837762 35838060 -112945412 + AluJb SINE Alu 1 307 -5 21 0 0 0 chr11 35838241 35838262 -112945210 + AT_rich Low_complexity Low_complexity 1 21 0 2138 93 0 24 chr11 35838644 35838955 -112944517 - AluSx SINE Alu 0 304 1 688 267 40 13 chr11 35839565 35839790 -112943682 - MIR SINE MIR -12 250 20 1464 144 94 67 chr11 35839891 35840190 -112943282 + AluJo SINE Alu 1 307 -5 715 186 8 0 chr11 35840423 35840547 -112942925 + FLAM_A SINE Alu 18 142 0 1929 106 0 0 chr11 35841865 35842120 -112941352 + AluSg SINE Alu 50 304 -6 7619 34 14 0 chr11 35842616 35843862 -112939610 - L1PA4 LINE L1 -14 6141 4889 43454 35 22 1 chr11 35844595 35850658 -112932814 + L1PA3 LINE L1 1 6191 0 36252 86 11 7 chr11 35851052 35856049 -112927423 + L1P LINE L1 238 5254 -892 1212 58 0 0 chr11 35856049 35856199 -112927273 + L1PA6 LINE L1 6000 6153 -1 1369 224 63 15 chr11 35856200 35856598 -112926874 - L1M4c LINE L1 -4768 1616 1200 261 119 0 0 chr11 35856709 35856751 -112926721 + (TTCC)n Simple_repeat Simple_repeat 1 42 0 182 36 0 36 chr11 35857785 35857813 -112925659 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 253 336 45 22 chr11 35857902 35858036 -112925436 - L2 LINE L2 -3 3269 3133 1070 285 78 42 chr11 35858153 35858778 -112924694 - L1MEd LINE L1 -4745 1565 832 2124 95 0 3 chr11 35858778 35859063 -112924409 - AluSg SINE Alu -26 284 1 1070 285 78 42 chr11 35859063 35859332 -112924140 - L1MEd LINE L1 -5478 832 574 247 314 151 6 chr11 35860066 35860225 -112923247 - MIR SINE MIR -69 193 12 595 257 88 61 chr11 35860265 35860526 -112922946 - L2 LINE L2 0 3313 3046 235 360 20 0 chr11 35861706 35861806 -112921666 + MIR3 SINE MIR 74 175 -33 345 273 40 0 chr11 35862206 35862305 -112921167 - MIR3 SINE MIR -3 205 103 2071 130 0 0 chr11 35862306 35862606 -112920866 + AluSx SINE Alu 1 300 -12 537 267 65 54 chr11 35864081 35864358 -112919114 - L1ME3A LINE L1 -207 5963 5684 485 283 107 6 chr11 35864879 35865056 -112918416 - MER91A DNA MER1_type 0 196 2 2079 90 42 0 chr11 35865087 35865375 -112918097 + AluY SINE Alu 1 300 -11 181 250 16 31 chr11 35865997 35866061 -112917411 + MIR SINE MIR 44 106 -102 796 277 34 47 chr11 35866065 35866300 -112917172 - MIR SINE MIR 0 262 31 2034 131 0 3 chr11 35866389 35866702 -112916770 + AluSx SINE Alu 1 312 0 445 200 117 8 chr11 35868057 35868177 -112915295 + MER117 DNA MER1_type 65 197 0 347 330 110 53 chr11 35868536 35868763 -112914709 - L2 LINE L2 -31 3241 3002 2045 144 6 34 chr11 35869287 35869641 -112913831 + MLT1A1 LTR MaLR 21 364 -1 6682 137 55 37 chr11 35869890 35871146 -112912326 - MER52C LTR ERV1 0 1278 1 386 225 208 17 chr11 35871645 35871765 -112911707 + MIR SINE MIR 118 260 -2 915 152 0 0 chr11 35871843 35871981 -112911491 + FRAM SINE Alu 1 138 -38 2042 91 0 17 chr11 35872191 35872478 -112910994 - AluSc SINE Alu -18 291 10 324 0 0 0 chr11 35876374 35876410 -112907062 + (CA)n Simple_repeat Simple_repeat 2 37 0 254 289 70 18 chr11 35878297 35878411 -112905061 + MIR SINE MIR 87 206 -56 1568 151 154 31 chr11 35880436 35880761 -112902711 + MLT1A1 LTR MaLR 1 365 0 15376 174 39 8 chr11 35881647 35888155 -112895317 - L1PB1 LINE L1 0 6867 1 421 267 60 9 chr11 35888269 35888385 -112895087 - L2 LINE L2 -1 3271 3150 205 270 40 40 chr11 35889219 35889293 -112894179 - L3 LINE CR1 0 1577 1504 320 226 129 11 chr11 35889685 35889778 -112893694 + MIR SINE MIR 39 142 -120 1624 163 37 17 chr11 35890341 35890635 -112892837 + AluJo SINE Alu 1 300 -12 227 354 31 16 chr11 35891002 35891129 -112892343 + MIR SINE MIR 132 260 -2 284 260 41 0 chr11 35891588 35891661 -112891811 + MIR SINE MIR 65 140 -68 1007 182 14 42 chr11 35891802 35892016 -112891456 - MER3 DNA MER1_type 0 209 2 1804 175 35 27 chr11 35892163 35892534 -112890938 + MLT1A2 LTR MaLR 1 374 0 309 280 91 23 chr11 35892974 35893106 -112890366 - MIR SINE MIR -19 243 103 225 260 0 0 chr11 35893121 35893171 -112890301 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 995 231 45 25 chr11 35893283 35893525 -112889947 - MIR SINE MIR -3 259 13 541 234 75 109 chr11 35893771 35894010 -112889462 - L2 LINE L2 -26 3246 3016 2493 169 83 9 chr11 35894950 35895417 -112888055 - LTR44 LTR ERV1 0 519 18 328 265 24 0 chr11 35895926 35896026 -112887446 - MIR SINE MIR -56 152 50 1380 160 98 21 chr11 35896509 35896796 -112886676 + AluJo SINE Alu 1 309 -3 1894 209 40 21 chr11 35897044 35897470 -112886002 + MER63B DNA MER1_type 3 436 0 395 181 0 75 chr11 35898049 35898075 -112885397 + LTR33 LTR ERVL 423 449 -72 1741 178 106 3 chr11 35898075 35898406 -112885066 - MLT1A1 LTR MaLR 0 365 1 395 181 0 75 chr11 35898406 35898473 -112884999 + LTR33 LTR ERVL 449 509 -12 744 326 30 4 chr11 35898549 35898785 -112884687 + MIR SINE MIR 21 262 0 364 163 165 3 chr11 35898793 35898896 -112884576 - L1MA9 LINE L1 -168 6132 6005 533 312 50 5 chr11 35899529 35899728 -112883744 + MIR SINE MIR 47 254 -8 472 220 220 43 chr11 35900113 35900368 -112883104 + Charlie8 DNA MER1_type 38 337 -2080 421 302 14 7 chr11 35900397 35900536 -112882936 + L2 LINE L2 1429 1568 -1746 652 189 14 42 chr11 35900539 35900682 -112882790 + MSTD LTR MaLR 1 139 -257 704 44 0 11 chr11 35900685 35900776 -112882696 + AluY SINE Alu 210 299 -12 602 193 79 13 chr11 35900830 35901021 -112882451 + MSTD LTR MaLR 169 396 0 2384 262 107 0 chr11 35901024 35901781 -112881691 + L2 LINE L2 1571 2408 -906 918 148 0 13 chr11 35901893 35902048 -112881424 - FRAM SINE Alu -24 152 1 979 249 168 20 chr11 35902076 35902672 -112880800 + L2 LINE L2 2611 3313 0 1874 123 3 64 chr11 35903567 35903893 -112879579 - AluSx SINE Alu -6 306 1 1109 198 33 16 chr11 35905327 35905453 -112878019 + AluJb SINE Alu 1 123 -189 261 0 0 0 chr11 35905453 35905482 -112877990 + (CA)n Simple_repeat Simple_repeat 2 30 0 1109 198 33 16 chr11 35905482 35905598 -112877874 + AluJb SINE Alu 123 247 -65 252 0 0 0 chr11 35906888 35906916 -112876556 + (TG)n Simple_repeat Simple_repeat 2 29 0 306 258 101 11 chr11 35906946 35907035 -112876437 + MIR SINE MIR 79 175 -87 1149 185 35 52 chr11 35907301 35907616 -112875856 + AluJo SINE Alu 1 310 0 577 174 122 111 chr11 35907619 35907907 -112875565 + MER34 LTR ERV1 252 542 0 407 268 197 28 chr11 35907916 35908129 -112875343 + MIR SINE MIR 12 260 -2 389 227 184 28 chr11 35909346 35909487 -112873985 + MIR SINE MIR 81 243 -19 578 241 186 10 chr11 35909663 35909862 -112873610 - MIR SINE MIR -1 261 28 244 295 9 67 chr11 35910201 35910306 -112873166 + MIR3 SINE MIR 1 99 -109 1211 176 59 64 chr11 35910609 35910931 -112872541 + MLT2B3 LTR ERVL 238 554 0 292 316 112 11 chr11 35911608 35911795 -112871677 - MIR SINE MIR -55 207 2 238 232 277 0 chr11 35912065 35912177 -112871295 + MIR SINE MIR 4 146 -62 461 259 61 42 chr11 35915741 35915853 -112867619 + L1MC/D LINE L1 5568 5676 -445 809 167 0 36 chr11 35915853 35915991 -112867481 - FLAM_C SINE Alu 0 133 1 461 259 61 42 chr11 35915991 35916130 -112867342 + L1MC/D LINE L1 5676 5825 -296 21 0 0 0 chr11 35916162 35916183 -112867289 + AT_rich Low_complexity Low_complexity 1 21 0 610 172 9 0 chr11 35916198 35916314 -112867158 + L1MB7 LINE L1 5126 5242 -904 781 172 0 0 chr11 35916320 35916436 -112867036 + FLAM_C SINE Alu 3 118 -25 2113 148 18 33 chr11 35916467 35916539 -112866933 + L1MB7 LINE L1 5257 5329 -855 1511 170 60 32 chr11 35916539 35916822 -112866650 + AluJo SINE Alu 1 291 -21 2113 148 18 33 chr11 35916822 35917147 -112866325 + L1MB7 LINE L1 5329 5648 -536 2604 193 26 8 chr11 35917428 35917932 -112865540 + L1MB7 LINE L1 5656 6168 -16 233 270 90 11 chr11 35918853 35918942 -112864530 - MIR SINE MIR 0 262 167 4375 136 77 9 chr11 35919304 35920069 -112863403 - Tigger3(Golem) DNA MER2_type -60 2969 2153 1002 128 0 0 chr11 35920070 35920211 -112863261 - AluSg/x SINE Alu -5 307 167 516 109 185 0 chr11 35920211 35920330 -112863142 - Tigger3(Golem) DNA MER2_type -879 2150 213 938 122 44 72 chr11 35920362 35920452 -112863020 - L1MC/D LINE L1 -730 5603 5519 2212 135 0 0 chr11 35920452 35920763 -112862709 + AluSx SINE Alu 2 312 0 938 122 44 72 chr11 35920763 35920852 -112862620 - L1MC/D LINE L1 -814 5519 5429 201 313 76 28 chr11 35921856 35922000 -112861472 + L2 LINE L2 2891 3041 -231 212 296 0 28 chr11 35922089 35922160 -112861312 + L2 LINE L2 3178 3246 -26 309 293 167 37 chr11 35922193 35922408 -112861064 + MIR SINE MIR 20 262 0 3634 148 36 26 chr11 35922713 35923334 -112860138 + Cheshire DNA MER1_type 1751 2381 -39 2260 112 0 0 chr11 35923334 35923630 -112859842 + AluSx SINE Alu 1 296 -16 3634 148 36 26 chr11 35923630 35923671 -112859801 + Cheshire DNA MER1_type 2381 2420 0 488 91 0 0 chr11 35924108 35924174 -112859298 + Cheshire DNA MER1_type 2036 2101 -319 1878 157 0 0 chr11 35924473 35924784 -112858688 + AluSx SINE Alu 1 311 0 316 253 0 71 chr11 35924785 35924884 -112858588 - MIR SINE MIR -55 153 62 531 269 41 14 chr11 35925330 35925475 -112857997 - MIR SINE MIR -106 156 8 1749 125 0 104 chr11 35925550 35925887 -112857585 + AluY SINE Alu 1 302 -9 25 31 0 0 chr11 35926249 35926281 -112857191 + AT_rich Low_complexity Low_complexity 1 32 0 360 249 121 30 chr11 35926395 35926560 -112856912 + MIR SINE MIR 83 262 0 770 262 47 11 chr11 35926829 35927059 -112856413 + MIR SINE MIR 2 232 -30 206 290 187 19 chr11 35928214 35928321 -112855151 - MIR3 SINE MIR -54 154 30 1235 156 0 45 chr11 35929036 35929260 -112854212 + AluJo SINE Alu 87 300 -12 308 277 21 64 chr11 35930174 35930315 -112853157 + L1ME4a LINE L1 5982 6116 -5 24543 70 20 13 chr11 35930962 35934812 -112848660 + L1PA7 LINE L1 2283 6154 0 4105 146 38 34 chr11 35935023 35935280 -112848192 + Tigger2 DNA MER2_type 1 255 -2463 1651 151 54 0 chr11 35935280 35935558 -112847914 + AluJb SINE Alu 1 293 -19 4105 146 38 34 chr11 35935558 35936056 -112847416 + Tigger2 DNA MER2_type 255 759 -1959 1673 150 4 0 chr11 35936111 35936365 -112847107 + Tigger2 DNA MER2_type 2464 2718 0 306 211 29 0 chr11 35936365 35936469 -112847003 + (TA)n Simple_repeat Simple_repeat 2 108 0 864 225 39 0 chr11 35936630 35936812 -112846660 - MER5A DNA MER1_type 0 189 1 2347 118 36 38 chr11 35936984 35937349 -112846123 + THE1B LTR MaLR 1 364 0 2066 136 109 5 chr11 35937349 35937716 -112845756 + MSTA LTR MaLR 24 428 0 237 309 18 65 chr11 35937730 35937898 -112845574 - MIR SINE MIR -5 257 98 1638 238 149 37 chr11 35937904 35938467 -112845005 + MLT1E2 LTR MaLR 1 626 0 2181 103 7 17 chr11 35938468 35938768 -112844704 + AluSx SINE Alu 1 297 -15 304 267 117 42 chr11 35939028 35939148 -112844324 - MIR3 SINE MIR -15 193 65 1858 80 4 4 chr11 35939460 35939697 -112843775 - L1PA10 LINE L1 -19 6149 5913 643 102 0 59 chr11 35940549 35940667 -112842805 - AluSp/q SINE Alu 0 313 203 2269 89 7 0 chr11 35940769 35941061 -112842411 + AluSg SINE Alu 1 294 -16 360 0 0 0 chr11 35942370 35942410 -112841062 + (CA)n Simple_repeat Simple_repeat 2 41 0 290 234 56 28 chr11 35942417 35942524 -112840948 + MER54A LTR ERVL 484 593 -308 266 174 72 58 chr11 35942529 35942598 -112840874 + FRAM SINE Alu 43 112 -54 857 124 35 7 chr11 35942601 35942746 -112840726 + MER54B LTR ERVL 643 791 -2 526 329 167 48 chr11 35943306 35943945 -112839527 + L2 LINE L2 1977 2691 -623 359 321 44 7 chr11 35944040 35944243 -112839229 + MLT1J LTR MaLR 288 479 -32 1846 144 24 0 chr11 35944459 35944751 -112838721 + AluSx SINE Alu 1 299 -13 1819 192 93 0 chr11 35945040 35945373 -112838099 + MLT1A1 LTR MaLR 2 365 0 2420 84 0 0 chr11 35945401 35945699 -112837773 + AluY SINE Alu 2 299 -12 234 128 0 0 chr11 35947151 35947190 -112836282 + (TCC)n Simple_repeat Simple_repeat 1 39 0 834 168 0 0 chr11 35947477 35947602 -112835870 - FLAM_A SINE Alu -8 125 1 25 0 0 0 chr11 35947910 35947935 -112835537 + AT_rich Low_complexity Low_complexity 1 25 0 632 243 131 92 chr11 35947935 35948403 -112835069 - MLT1G LTR MaLR -42 548 22 1040 270 94 26 chr11 35948656 35949092 -112834380 + L2 LINE L2 2774 3235 -78 774 175 32 53 chr11 35949895 35950084 -112833388 + Charlie1 DNA MER1_type 2577 2761 0 322 257 9 53 chr11 35950085 35950198 -112833274 + L1MEc LINE L1 632 739 -5657 3520 233 99 12 chr11 35950208 35951327 -112832145 + L1MEc LINE L1 2426 3642 -2573 254 242 115 77 chr11 35952512 35952650 -112830822 + L1ME4a LINE L1 5901 6049 -72 2105 135 0 0 chr11 35952650 35952947 -112830525 - AluSx SINE Alu -15 297 1 254 242 115 77 chr11 35952947 35952990 -112830482 + L1ME4a LINE L1 6049 6089 -32 21 0 0 0 chr11 35953708 35953729 -112829743 + AT_rich Low_complexity Low_complexity 1 21 0 1819 161 3 16 chr11 35954495 35954800 -112828672 - AluJo SINE Alu -11 301 1 207 246 29 0 chr11 35955065 35955134 -112828338 + (TA)n Simple_repeat Simple_repeat 2 72 0 21 0 0 0 chr11 35959525 35959546 -112823926 + AT_rich Low_complexity Low_complexity 1 21 0 2080 121 3 23 chr11 35960001 35960308 -112823164 - AluSx SINE Alu -11 301 1 1318 178 80 38 chr11 35961877 35962164 -112821308 - AluJo SINE Alu -13 299 1 937 140 104 133 chr11 35962505 35962582 -112820890 + AluJo SINE Alu 40 118 -194 300 27 0 0 chr11 35962582 35962619 -112820853 + (TAA)n Simple_repeat Simple_repeat 1 37 0 937 140 104 133 chr11 35962619 35962820 -112820652 + AluJo SINE Alu 118 310 -2 1366 224 14 3 chr11 35962825 35963111 -112820361 + AluJb SINE Alu 11 299 -13 23 0 0 0 chr11 35964054 35964077 -112819395 + AT_rich Low_complexity Low_complexity 1 23 0 893 288 81 32 chr11 35964859 35965578 -112817894 + L1MEc LINE L1 783 1565 -4831 1954 137 7 13 chr11 35965578 35965877 -112817595 + AluJo SINE Alu 1 297 -15 893 288 81 32 chr11 35965877 35966147 -112817325 + L1MEc LINE L1 1565 1820 -4576 404 269 24 12 chr11 35966162 35966753 -112816719 + L1MEc LINE L1 1880 2552 -3663 2815 166 94 25 chr11 35966804 35967411 -112816061 - MLT1E1 LTR MaLR -5 649 1 305 266 40 40 chr11 35967416 35967593 -112815879 + L1MEc LINE L1 2610 2786 -3429 4437 235 70 29 chr11 35967696 35969804 -112813668 + L1MEc LINE L1 2775 6210 -29 1949 155 31 75 chr11 35969821 35970023 -112813449 + L1MD3 LINE L1 7497 7706 -289 2056 123 40 7 chr11 35970023 35970324 -112813148 + AluSx SINE Alu 2 312 0 1949 155 31 75 chr11 35970324 35970643 -112812829 + L1MD3 LINE L1 7706 7995 0 487 295 45 19 chr11 35970888 35970935 -112812537 + MIR SINE MIR 28 72 -190 2532 130 36 7 chr11 35970935 35971351 -112812121 + MSTA LTR MaLR 1 428 0 487 295 45 19 chr11 35971351 35971459 -112812013 + MIR SINE MIR 72 187 -75 384 309 72 26 chr11 35971548 35971656 -112811816 + MIR3 SINE MIR 36 154 -54 1140 209 5 5 chr11 35971656 35971876 -112811596 + MER58A DNA MER1_type 4 223 -1 384 309 72 26 chr11 35971876 35971919 -112811553 + MIR3 SINE MIR 154 194 -14 240 111 0 0 chr11 35972319 35972355 -112811117 + (A)n Simple_repeat Simple_repeat 1 36 0 478 279 72 58 chr11 35972544 35972624 -112810848 + MIR SINE MIR 17 94 -168 2463 46 0 0 chr11 35972624 35972932 -112810540 - AluY SINE Alu 0 308 1 478 279 72 58 chr11 35972932 35973058 -112810414 + MIR SINE MIR 94 227 -35 211 324 40 27 chr11 35973609 35973683 -112809789 + MIR SINE MIR 1 75 -187 224 279 98 25 chr11 35975049 35975171 -112808301 - L2 LINE L2 -819 2495 2365 180 0 0 0 chr11 35975188 35975208 -112808264 + (T)n Simple_repeat Simple_repeat 1 20 0 404 270 205 48 chr11 35975238 35975531 -112807941 - HAL1 LINE L1 0 2507 2169 304 303 91 8 chr11 35975592 35975724 -112807748 - HAL1b LINE L1 -438 910 768 411 332 94 23 chr11 35975746 35976053 -112807419 - L2 LINE L2 -994 2320 1992 22 35 0 0 chr11 35976589 35976618 -112806854 + AT_rich Low_complexity Low_complexity 1 29 0 298 242 0 88 chr11 35977278 35977369 -112806103 - MER5B DNA MER1_type -76 102 20 337 275 185 51 chr11 35977681 35978142 -112805330 + L2 LINE L2 2715 3248 -24 229 279 104 60 chr11 35978370 35978571 -112804901 - L2 LINE L2 -423 2891 2682 208 113 38 57 chr11 35979857 35979910 -112803562 + C-rich Low_complexity Low_complexity 2 53 0 1027 162 21 30 chr11 35981659 35981893 -112801579 - MER96B DNA MER1_type? 0 417 186 2002 148 7 0 chr11 35981931 35982222 -112801250 - AluSq SINE Alu -20 293 1 1646 169 30 20 chr11 35982738 35983033 -112800439 + AluJb SINE Alu 1 298 -14 743 204 0 0 chr11 35984939 35985071 -112798401 - FLAM_A SINE Alu -1 132 1 629 260 96 82 chr11 35985098 35985575 -112797897 + LTR33 LTR ERVL 36 519 -2 1688 246 32 41 chr11 35986712 35987180 -112796292 - LTR16B LTR ERVL 0 464 1 2052 134 73 6 chr11 35987815 35988157 -112795315 + MLT1A1 LTR MaLR 1 365 0 371 264 146 33 chr11 35988158 35988370 -112795102 - LTR50 LTR ERVL -165 630 395 378 108 0 0 chr11 35988430 35988495 -112794977 + (CA)n Simple_repeat Simple_repeat 1 65 0 2127 124 0 7 chr11 35989102 35989400 -112794072 - AluSx SINE Alu -16 296 1 478 226 0 15 chr11 35990199 35990332 -112793140 + L1 LINE L1 4882 5012 -1134 367 103 0 29 chr11 35990368 35990436 -112793036 + (GAAAA)n Simple_repeat Simple_repeat 4 69 0 243 170 0 0 chr11 35990436 35990489 -112792983 + L1 LINE L1 5002 5054 -1092 218 105 26 0 chr11 35990506 35990544 -112792928 + GA-rich Low_complexity Low_complexity 2 40 0 496 203 41 0 chr11 35990545 35990668 -112792804 + L1 LINE L1 5040 5167 -979 976 107 0 0 chr11 35990691 35990850 -112792622 + L1 LINE L1 5151 5309 -837 256 114 0 0 chr11 35990868 35990912 -112792560 + LOR1a LTR ERV1 240 283 -214 817 135 23 0 chr11 35990996 35991129 -112792343 + FLAM_C SINE Alu 1 136 -7 432 171 0 0 chr11 35991142 35991212 -112792260 + AluJ/FRAM SINE Alu 228 297 -15 21 0 0 0 chr11 35991563 35991584 -112791888 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr11 35991621 35991644 -112791828 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1142 154 68 14 chr11 35991746 35991966 -112791506 + L1PB4 LINE L1 5922 6153 -3 38 0 0 0 chr11 35991987 35992025 -112791447 + AT_rich Low_complexity Low_complexity 1 38 0 2784 78 18 13 chr11 35993553 35993951 -112789521 + L1PA8 LINE L1 5771 6170 -2 2304 123 0 0 chr11 35994251 35994561 -112788911 + AluSx SINE Alu 1 310 -2 280 288 89 29 chr11 35994628 35994909 -112788563 - L1ME LINE L1 -262 5859 5562 474 297 11 63 chr11 35994942 35995228 -112788244 + L1M4 LINE L1 2770 3040 -3106 195 129 0 0 chr11 35995377 35995408 -112788064 + (TG)n Simple_repeat Simple_repeat 1 31 0 230 342 9 105 chr11 35995448 35995676 -112787796 - L2 LINE L2 -110 3162 2957 210 71 0 0 chr11 35996676 35996704 -112786768 + (T)n Simple_repeat Simple_repeat 1 28 0 426 304 70 6 chr11 35996735 35996893 -112786579 + MIR3 SINE MIR 35 202 -6 2584 122 49 5 chr11 35997263 35997673 -112785799 + MSTA LTR MaLR 1 428 0 204 358 61 40 chr11 35997950 35998098 -112785374 - MIR3 SINE MIR -55 153 3 716 167 81 54 chr11 35998200 35998325 -112785147 + L1M4 LINE L1 4622 4757 -1389 2162 120 0 38 chr11 35998325 35998641 -112784831 + AluSx SINE Alu 1 304 -8 716 167 81 54 chr11 35998641 35998736 -112784736 + L1M4 LINE L1 4757 4848 -1298 347 202 131 0 chr11 35998799 35998811 -112784661 - L1MA10 LINE L1 -4 6330 6319 889 219 94 23 chr11 35998811 35999076 -112784396 - L1ME1 LINE L1 -7 6159 5876 * 1242 280 48 40 chr11 35999069 35999358 -112784114 + L1M4 LINE L1 4032 4317 -1829 2009 138 7 17 chr11 35999358 35999656 -112783816 + AluSx SINE Alu 1 295 -17 1242 280 48 40 chr11 35999656 36000260 -112783212 + L1M4 LINE L1 4317 4932 -1214 * 2524 200 54 16 chr11 36000250 36001010 -112782462 + L1MDa LINE L1 2438 3220 -3320 4717 127 12 38 chr11 36001012 36001154 -112782318 + L1MA2 LINE L1 4935 5079 -1225 1967 138 0 45 chr11 36001154 36001466 -112782006 - AluJb SINE Alu -14 298 1 4717 127 12 38 chr11 36001466 36002476 -112780996 + L1MA2 LINE L1 5079 6055 -249 602 224 89 4 chr11 36002472 36002753 -112780719 + L1MDa LINE L1 3445 3749 -2791 * 1150 72 0 0 chr11 36002753 36002891 -112780581 + AluY SINE Alu 1 138 -173 5562 180 44 90 chr11 36002918 36004389 -112779083 + L1MB7 LINE L1 3739 5276 -1302 594 119 20 0 chr11 36004389 36004490 -112778982 + L1PB2 LINE L1 6048 6150 -1 5562 180 44 90 chr11 36004490 36005064 -112778408 + L1MB7 LINE L1 5276 5875 -703 1497 185 64 20 chr11 36005064 36005362 -112778110 + AluJo SINE Alu 1 311 -1 5562 180 44 90 chr11 36005362 36006161 -112777311 + L1MB7 LINE L1 5875 6449 -129 2357 82 7 3 chr11 36006161 36006466 -112777006 + AluSq SINE Alu 1 306 -7 5562 180 44 90 chr11 36006466 36006536 -112776936 + L1MB7 LINE L1 6449 6521 -57 2520 186 73 30 chr11 36006756 36007397 -112776075 - LTR65 LTR ERV1 0 669 1 749 104 26 17 chr11 36009052 36009167 -112774305 + FLAM_C SINE Alu 1 116 -17 240 163 0 0 chr11 36009459 36009502 -112773970 + (TAA)n Simple_repeat Simple_repeat 3 45 0 289 250 109 0 chr11 36009661 36009753 -112773719 - L2 LINE L2 -6 3307 3206 219 262 48 39 chr11 36009880 36009983 -112773489 + MIR3 SINE MIR 96 199 -9 324 0 0 0 chr11 36010230 36010266 -112773206 + (CA)n Simple_repeat Simple_repeat 2 37 0 432 214 20 20 chr11 36010967 36011065 -112772407 - MER5A DNA MER1_type -83 106 9 977 154 6 0 chr11 36011351 36011507 -112771965 - AluJo SINE Alu 0 312 156 967 156 6 24 chr11 36011553 36011720 -112771752 - AluJo SINE Alu -148 164 1 372 272 117 99 chr11 36011914 36012197 -112771275 - L2 LINE L2 0 3272 2985 242 274 48 60 chr11 36012729 36012813 -112770659 - MIR SINE MIR -83 125 43 1966 133 14 111 chr11 36012947 36013369 -112770103 - LOR1b LTR ERV1 0 461 81 1653 72 36 84 chr11 36063382 36063632 -112719840 + AluSg SINE Alu 63 300 -10 648 277 121 9 chr11 36066061 36066292 -112717180 - MIR SINE MIR 0 262 6 384 273 114 63 chr11 36066607 36067003 -112716469 + L1MEd LINE L1 420 835 -5284 2020 71 0 8 chr11 36067410 36067662 -112715810 - AluY SINE Alu -20 291 42 1380 136 30 30 chr11 36067879 36067937 -112715535 + MER46A DNA MER2_type 1 58 -2673 2011 115 0 30 chr11 36067937 36068242 -112715230 - AluJb SINE Alu -16 296 1 1380 136 30 30 chr11 36068242 36068419 -112715053 + MER46A DNA MER2_type 57 236 0 1844 136 35 3 chr11 36068849 36069135 -112714337 - AluSx SINE Alu -17 295 1 847 159 0 0 chr11 36069394 36069526 -112713946 - FLAM_C SINE Alu 0 133 2 2227 100 0 3 chr11 36069831 36070120 -112713352 - AluSq SINE Alu -17 296 9 23 0 0 0 chr11 36070503 36070526 -112712946 + AT_rich Low_complexity Low_complexity 1 23 0 1541 172 48 7 chr11 36070526 36070799 -112712673 - AluJo SINE Alu -28 284 1 180 261 101 0 chr11 36072049 36072118 -112711354 - L2 LINE L2 -675 2639 2564 496 139 0 0 chr11 36072414 36072486 -112710986 + AluJ/FLAM SINE Alu 1 72 -240 234 0 0 0 chr11 36072500 36072526 -112710946 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2108 112 14 10 chr11 36073284 36073580 -112709892 - AluSx SINE Alu -5 307 11 509 237 0 0 chr11 36073792 36073885 -112709587 + FLAM_A SINE Alu 5 97 -45 532 282 125 44 chr11 36074301 36074709 -112708763 + L1ME2 LINE L1 5510 5950 -214 1818 174 0 13 chr11 36074725 36075030 -112708442 + AluJo SINE Alu 1 301 -11 2426 90 3 0 chr11 36075175 36075476 -112707996 - AluSx SINE Alu -9 303 2 1909 123 3 91 chr11 36075490 36075832 -112707640 - AluSx SINE Alu 0 312 1 229 211 0 0 chr11 36075843 36075895 -112707577 + A-rich Low_complexity Low_complexity 1 52 0 1801 170 0 41 chr11 36075958 36076275 -112707197 - AluJo SINE Alu -8 304 1 180 320 26 26 chr11 36076592 36076670 -112706802 + MIR SINE MIR 66 143 -119 363 194 71 20 chr11 36076681 36076779 -112706693 + MER5A DNA MER1_type 37 139 -50 * 431 212 71 0 chr11 36076695 36076780 -112706692 - MER5A DNA MER1_type -38 151 61 2464 87 0 3 chr11 36076896 36077206 -112706266 - AluSg SINE Alu -1 309 1 1673 166 58 0 chr11 36077214 36077540 -112705932 + MER47A DNA MER2_type 22 366 0 3396 172 151 67 chr11 36077700 36078181 -112705291 + L1MB7 LINE L1 4072 4511 -1635 4275 61 44 10 chr11 36078181 36078768 -112704704 + L1PB1 LINE L1 5538 6144 -7 3396 172 151 67 chr11 36078768 36078953 -112704519 + L1MB7 LINE L1 4511 4679 -1467 2316 86 13 7 chr11 36078953 36079257 -112704215 - AluSg SINE Alu -4 306 1 3396 172 151 67 chr11 36079257 36079789 -112703683 + L1MB7 LINE L1 4679 5372 -774 403 168 10 10 chr11 36079797 36079898 -112703574 + CT-rich Low_complexity Low_complexity 3 103 0 1392 180 0 4 chr11 36079950 36080178 -112703294 + AluJb SINE Alu 86 312 0 3047 191 77 12 chr11 36080179 36080919 -112702553 + L1MB7 LINE L1 5356 6143 -41 189 132 0 0 chr11 36081600 36081638 -112701834 + (T)n Simple_repeat Simple_repeat 1 38 0 944 77 0 0 chr11 36081644 36081761 -112701711 - AluSq/x SINE Alu -196 117 1 1649 165 40 7 chr11 36081775 36082047 -112701425 - AluJo SINE Alu -31 281 1 2043 126 0 3 chr11 36082459 36082772 -112700700 + AluY SINE Alu 1 312 0 2289 85 17 0 chr11 36082876 36083171 -112700301 - AluSq SINE Alu -13 300 1 2290 104 0 0 chr11 36083182 36083471 -112700001 - AluSq SINE Alu -24 289 1 2414 64 3 0 chr11 36083842 36084140 -112699332 - AluSc SINE Alu -10 299 1 320 267 160 38 chr11 36084468 36084599 -112698873 + L2 LINE L2 3124 3270 -2 2063 136 0 28 chr11 36084934 36085251 -112698221 - AluSx SINE Alu -4 308 1 2020 146 0 3 chr11 36085280 36085582 -112697890 - AluSx SINE Alu -5 307 7 38 0 0 0 chr11 36085639 36085677 -112697795 + AT_rich Low_complexity Low_complexity 1 38 0 27 0 0 0 chr11 36085685 36085712 -112697760 + AT_rich Low_complexity Low_complexity 1 27 0 1806 142 58 3 chr11 36085836 36086131 -112697341 + AluJb SINE Alu 1 311 -1 553 287 86 45 chr11 36086610 36087120 -112696352 - L1ME4a LINE L1 -97 6024 5497 2067 127 0 10 chr11 36087191 36087490 -112695982 - AluSx SINE Alu -16 296 1 21 0 0 0 chr11 36087492 36087513 -112695959 + AT_rich Low_complexity Low_complexity 1 21 0 539 298 104 27 chr11 36087902 36088201 -112695271 + L2 LINE L2 2990 3311 -2 2286 98 0 19 chr11 36088425 36088732 -112694740 - AluSg SINE Alu -1 309 9 26 0 0 0 chr11 36088757 36088783 -112694689 + AT_rich Low_complexity Low_complexity 1 26 0 383 359 180 11 chr11 36088877 36089239 -112694233 - L2 LINE L2 -737 2577 2155 2206 106 0 3 chr11 36090065 36090348 -112693124 + AluSq SINE Alu 1 282 -31 378 0 0 0 chr11 36090478 36090520 -112692952 + (TA)n Simple_repeat Simple_repeat 2 43 0 2305 85 3 26 chr11 36090520 36090826 -112692646 - AluSc SINE Alu -10 299 1 373 168 56 56 chr11 36091229 36091354 -112692118 - L1ME4a LINE L1 0 6121 5997 678 140 22 37 chr11 36091383 36091519 -112691953 - AluJb SINE Alu -178 134 1 23 54 0 0 chr11 36091525 36091562 -112691910 + AT_rich Low_complexity Low_complexity 1 37 0 2117 98 0 14 chr11 36091655 36091965 -112691507 + AluY SINE Alu 1 306 0 1632 168 26 23 chr11 36091967 36092097 -112691375 + AluJo SINE Alu 1 129 -183 2196 130 3 3 chr11 36092097 36092404 -112691068 + AluSx SINE Alu 1 307 -5 1632 168 26 23 chr11 36092404 36092582 -112690890 + AluJo SINE Alu 129 310 -2 580 256 118 0 chr11 36092719 36092930 -112690542 - L1MC4 LINE L1 0 8042 7807 945 170 32 46 chr11 36093094 36093312 -112690160 - MER20 DNA MER1_type -4 215 1 476 250 37 37 chr11 36093357 36093521 -112689951 - MIR SINE MIR -1 261 98 2054 112 14 0 chr11 36093593 36093880 -112689592 - AluSg SINE Alu -19 291 1 487 250 151 48 chr11 36093967 36094259 -112689213 + L1ME LINE L1 5502 5823 -298 235 233 33 17 chr11 36094499 36094559 -112688913 - MER66B LTR ERV1 -141 345 285 2278 112 3 6 chr11 36096152 36096465 -112687007 + AluSx SINE Alu 1 312 0 1786 159 10 17 chr11 36096878 36097173 -112686299 - AluJb SINE Alu -19 293 1 1616 249 71 57 chr11 36097602 36098220 -112685252 + L1ME LINE L1 1 627 -5443 828 176 14 0 chr11 36098229 36098371 -112685101 + FRAM SINE Alu 20 163 -13 1111 211 84 54 chr11 36098394 36098986 -112684486 + L1ME LINE L1 628 1220 -4860 1065 117 0 155 chr11 36098986 36099199 -112684273 + AluSx SINE Alu 1 180 -132 524 254 81 48 chr11 36100593 36100802 -112682670 - MIR SINE MIR -34 228 13 1671 149 82 3 chr11 36100843 36101125 -112682347 - AluJb SINE Alu -8 304 1 268 237 140 11 chr11 36101269 36101362 -112682110 - Charlie7 DNA MER1_type -2 2610 2506 1408 128 20 0 chr11 36101428 36101632 -112681840 + AluJb SINE Alu 87 294 -18 2246 97 28 0 chr11 36102415 36102705 -112680767 + AluSq SINE Alu 1 298 -15 598 245 122 21 chr11 36102906 36103094 -112680378 - MIR SINE MIR -16 246 40 1403 167 61 19 chr11 36103307 36103571 -112679901 - AluJo SINE Alu -7 305 31 2241 123 0 7 chr11 36103930 36104240 -112679232 + AluSg SINE Alu 1 308 -2 1567 186 16 29 chr11 36104294 36104606 -112678866 + AluJo SINE Alu 5 312 0 538 315 155 59 chr11 36105283 36105754 -112677718 + L2 LINE L2 1716 2140 -1174 2197 129 0 0 chr11 36105754 36106048 -112677424 - AluSx SINE Alu -16 296 3 538 315 155 59 chr11 36106048 36106129 -112677343 + L2 LINE L2 2140 2212 -1102 3576 185 66 22 chr11 36106129 36107020 -112676452 - MER63C DNA MER1_type 0 930 1 538 315 155 59 chr11 36107020 36107181 -112676291 + L2 LINE L2 2212 2499 -815 1562 269 141 16 chr11 36108037 36108867 -112674605 - L2 LINE L2 -2 3311 2369 2359 92 10 0 chr11 36109016 36109310 -112674162 + AluSq SINE Alu 1 297 -16 913 202 0 23 chr11 36109979 36110152 -112673320 - AluJb SINE Alu -15 297 129 354 202 85 47 chr11 36110449 36110578 -112672894 - L1ME4a LINE L1 -46 6075 5942 671 277 102 3 chr11 36110639 36110865 -112672607 + MIR SINE MIR 3 245 -17 26 0 0 0 chr11 36111060 36111086 -112672386 + AT_rich Low_complexity Low_complexity 1 26 0 2390 74 3 0 chr11 36111553 36111849 -112671623 + AluSp SINE Alu 1 297 -16 21 36 0 0 chr11 36111931 36111959 -112671513 + AT_rich Low_complexity Low_complexity 1 28 0 514 257 193 9 chr11 36111975 36112067 -112671405 - MIR SINE MIR -2 260 186 2119 100 10 3 chr11 36112067 36112366 -112671106 - AluSg SINE Alu -9 301 1 514 257 193 9 chr11 36112366 36112491 -112670981 - MIR SINE MIR -76 186 3 661 266 100 64 chr11 36113868 36114081 -112669391 + L1ME3A LINE L1 5329 5533 -637 2134 101 0 23 chr11 36114081 36114389 -112669083 + AluSg SINE Alu 2 302 -8 661 266 100 64 chr11 36114389 36114923 -112668549 + L1ME3A LINE L1 5533 6110 -60 236 257 149 0 chr11 36114942 36115016 -112668456 - L2 LINE L2 0 3313 3229 2447 145 214 20 chr11 36115070 36115616 -112667856 - MER39B LTR ERV1 -1 652 1 1739 132 45 0 chr11 36115724 36116011 -112667461 + AluSx SINE Alu 1 300 -12 421 235 217 0 chr11 36116269 36116384 -112667088 - MIR SINE MIR -13 249 110 825 235 125 28 chr11 36116869 36117158 -112666314 + L2 LINE L2 2992 3308 -5 2168 87 0 0 chr11 36117539 36117826 -112665646 - AluSq SINE Alu -26 287 1 668 123 38 0 chr11 36117847 36117953 -112665519 + L1PA8 LINE L1 6050 6159 -13 2218 85 0 7 chr11 36120896 36121203 -112662269 - AluSx SINE Alu -7 305 1 207 0 0 0 chr11 36121207 36121230 -112662242 + (T)n Simple_repeat Simple_repeat 1 23 0 237 130 0 22 chr11 36121287 36121333 -112662139 - MLT1K LTR MaLR -30 558 514 2252 92 0 0 chr11 36121337 36121640 -112661832 + AluSx SINE Alu 8 310 -2 574 250 62 67 chr11 36121808 36122032 -112661440 - L2 LINE L2 -6 3307 3085 1824 138 7 0 chr11 36122375 36122651 -112660821 + AluJo SINE Alu 22 299 -13 1038 172 30 0 chr11 36122875 36123044 -112660428 + MER2 DNA MER2_type 1 174 -171 358 152 136 0 chr11 36123098 36123164 -112660308 + MER2 DNA MER2_type 270 344 -1 27 0 0 0 chr11 36123291 36123318 -112660154 + AT_rich Low_complexity Low_complexity 1 27 0 304 129 71 57 chr11 36123489 36123559 -112659913 - L1ME4a LINE L1 0 6121 6051 465 215 180 31 chr11 36123618 36123846 -112659626 - L1ME4a LINE L1 -207 5914 5653 339 264 35 76 chr11 36123975 36124119 -112659353 - L1ME4a LINE L1 -708 5413 5274 22 70 0 0 chr11 36124134 36124177 -112659295 + AT_rich Low_complexity Low_complexity 1 43 0 236 245 19 47 chr11 36124233 36124339 -112659133 - L1P LINE L1 -1134 5012 4910 1677 120 75 0 chr11 36124539 36124805 -112658667 - AluSx SINE Alu -13 299 14 2091 95 7 0 chr11 36125394 36125690 -112657782 + AluSp SINE Alu 1 298 -15 836 157 0 29 chr11 36126011 36126151 -112657321 - AluJo SINE Alu -175 137 2 621 234 83 102 chr11 36126576 36126740 -112656732 - L2 LINE L2 -404 2910 2751 2100 117 13 0 chr11 36126740 36127048 -112656424 - AluSx SINE Alu 0 312 1 621 234 83 102 chr11 36127048 36127148 -112656324 - L2 LINE L2 -563 2751 2651 831 240 180 31 chr11 36127310 36127662 -112655810 + LTR16A LTR ERVL 47 450 0 1237 209 45 150 chr11 36127662 36128160 -112655312 + L2 LINE L2 2691 3240 -73 180 0 0 0 chr11 36128160 36128180 -112655292 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2029 103 0 0 chr11 36128184 36128457 -112655015 - AluSg SINE Alu -37 273 1 1237 209 45 150 chr11 36128457 36128651 -112654821 + L2 LINE L2 3243 3313 0 195 272 226 23 chr11 36128661 36128878 -112654594 - L2 LINE L2 -1071 2243 1983 469 125 0 50 chr11 36128892 36128972 -112654500 + AluJb SINE Alu 86 161 -151 223 338 45 20 chr11 36129037 36129235 -112654237 - L2 LINE L2 -1431 1883 1681 325 183 150 100 chr11 36129281 36129401 -112654071 + MER94 DNA DNA 8 133 -1 216 0 0 0 chr11 36129504 36129528 -112653944 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 2067 95 17 14 chr11 36129806 36130100 -112653372 - AluSq SINE Alu -18 295 1 2070 107 0 22 chr11 36130238 36130556 -112652916 + AluSx SINE Alu 1 311 -1 528 221 44 44 chr11 36130771 36130929 -112652543 + MIR SINE MIR 49 206 -56 306 0 0 0 chr11 36131812 36131846 -112651626 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 335 301 90 38 chr11 36131846 36131979 -112651493 - L2 LINE L2 -13 3300 3161 31 88 0 0 chr11 36132253 36132333 -112651139 + AT_rich Low_complexity Low_complexity 1 80 0 1852 101 0 4 chr11 36132949 36133207 -112650265 + AluSg SINE Alu 26 282 -28 240 35 0 0 chr11 36133211 36133240 -112650232 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 2561 36 0 0 chr11 36133736 36134037 -112649435 - AluY SINE Alu -10 301 1 543 293 83 15 chr11 36134471 36134676 -112648796 + MIR SINE MIR 37 255 -7 2164 75 4 7 chr11 36134679 36134960 -112648512 + AluSg SINE Alu 1 280 -30 1361 171 17 38 chr11 36135080 36135367 -112648105 - AluJo SINE Alu -14 298 18 1015 103 35 14 chr11 36135392 36135537 -112647935 - THE1B LTR MaLR -216 148 1 440 75 75 0 chr11 36136439 36136506 -112646966 + L1PA16 LINE L1 6086 6157 -9 214 163 47 0 chr11 36136521 36136564 -112646908 + (CATATA)n Simple_repeat Simple_repeat 6 50 0 2081 125 3 0 chr11 36136598 36136903 -112646569 + AluSx SINE Alu 7 312 0 315 0 0 0 chr11 36136903 36136938 -112646534 + (TA)n Simple_repeat Simple_repeat 1 35 0 306 0 0 0 chr11 36136937 36136971 -112646501 + (GA)n Simple_repeat Simple_repeat 2 35 0 * 266 293 42 61 chr11 36136975 36137187 -112646285 - L1ME3 LINE L1 -210 5952 5745 588 245 95 40 chr11 36137208 36137408 -112646064 - MIR SINE MIR -36 226 16 2200 76 36 3 chr11 36137564 36137866 -112645606 - AluSx SINE Alu 0 312 1 2543 45 0 0 chr11 36138231 36138542 -112644930 - AluY SINE Alu 0 311 1 1800 137 10 10 chr11 36138543 36138836 -112644636 - AluSx SINE Alu -19 293 1 249 194 11 32 chr11 36138909 36139002 -112644470 + (TCTA)n Simple_repeat Simple_repeat 2 92 0 284 283 151 0 chr11 36139559 36139665 -112643807 + MIR SINE MIR 46 167 -95 245 277 0 0 chr11 36139713 36139760 -112643712 - L2 LINE L2 -92 3180 3134 579 283 118 0 chr11 36140191 36140403 -112643069 - MER112 DNA MER1_type -7 253 17 2270 90 0 0 chr11 36140449 36140748 -112642724 - AluSq SINE Alu -12 301 3 413 154 287 49 chr11 36141129 36141272 -112642200 + MER69A DNA AcHobo 1 177 0 2171 113 0 0 chr11 36141575 36141875 -112641597 + AluSx SINE Alu 1 300 -12 2150 113 0 0 chr11 36142128 36142451 -112641021 + AluSx SINE Alu 1 312 0 361 252 10 68 chr11 36142692 36142795 -112640677 + MIR SINE MIR 11 107 -155 581 228 39 8 chr11 36143005 36143132 -112640340 - MER63 DNA MER1_type -76 760 4 377 127 16 32 chr11 36143134 36143197 -112640275 + MIR SINE MIR 119 180 -82 2171 85 0 0 chr11 36143358 36143641 -112639831 - AluSx SINE Alu -17 295 13 27 0 0 0 chr11 36144064 36144091 -112639381 + AT_rich Low_complexity Low_complexity 1 27 0 1594 176 0 41 chr11 36144602 36144774 -112638698 - AluJo SINE Alu -6 306 151 1895 152 0 0 chr11 36144774 36145070 -112638402 - AluSx SINE Alu -16 296 1 1594 176 0 41 chr11 36145070 36145216 -112638256 - AluJo SINE Alu -161 151 1 2253 83 3 10 chr11 36145753 36146054 -112637418 - AluSx SINE Alu -13 299 1 296 175 0 79 chr11 36146392 36146455 -112637017 + MSTC LTR MaLR 1 51 -377 911 163 15 82 chr11 36146758 36146814 -112636658 - MER5A DNA MER1_type -6 183 125 1754 167 3 0 chr11 36146814 36147114 -112636358 + AluJb SINE Alu 5 305 -7 911 163 15 82 chr11 36147114 36147253 -112636219 - MER5A DNA MER1_type -64 125 1 21 0 0 0 chr11 36147452 36147473 -112635999 + AT_rich Low_complexity Low_complexity 1 21 0 658 214 10 85 chr11 36150060 36150138 -112633334 + MER5A DNA MER1_type 1 83 -106 1879 133 0 31 chr11 36150138 36150460 -112633012 + AluJb SINE Alu 1 312 0 658 214 10 85 chr11 36150460 36150582 -112632890 + MER5A DNA MER1_type 83 186 -3 448 331 19 0 chr11 36151474 36151631 -112631841 + MIR3 SINE MIR 43 202 -6 611 264 31 0 chr11 36151699 36151862 -112631610 - LTR16A1 LTR ERVL 0 457 290 22 35 0 0 chr11 36152453 36152482 -112630990 + AT_rich Low_complexity Low_complexity 1 29 0 799 278 21 0 chr11 36153541 36153732 -112629740 - MIR SINE MIR -48 214 20 1637 158 43 4 chr11 36156013 36156291 -112627181 + AluJb SINE Alu 1 289 -23 1364 119 0 5 chr11 36156304 36156505 -112626967 - AluSq SINE Alu -11 302 103 249 33 0 0 chr11 36159142 36159172 -112624300 + (CCG)n Simple_repeat Simple_repeat 3 32 0 31 26 0 0 chr11 36159284 36159322 -112624150 + GC_rich Low_complexity Low_complexity 1 38 0 207 100 0 0 chr11 36159720 36159750 -112623722 + (T)n Simple_repeat Simple_repeat 1 30 0 369 0 0 0 chr11 36160862 36160903 -112622569 + (TG)n Simple_repeat Simple_repeat 2 42 0 1576 128 114 29 chr11 36160970 36161251 -112622221 + AluJo SINE Alu 1 305 -7 330 305 48 9 chr11 36161424 36161529 -112621943 + MIR SINE MIR 2 110 -152 557 209 68 68 chr11 36161552 36161642 -112621830 + MIR SINE MIR 31 124 -138 2021 74 0 87 chr11 36161642 36161980 -112621492 + AluSx SINE Alu 1 311 0 557 209 68 68 chr11 36161980 36162065 -112621407 + MIR SINE MIR 123 207 -55 209 268 14 56 chr11 36162099 36162170 -112621302 + MIR SINE MIR 194 261 -1 2181 95 0 7 chr11 36162417 36162723 -112620749 - AluSx SINE Alu -8 304 1 389 270 22 0 chr11 36163994 36164083 -112619389 + MIR3 SINE MIR 64 154 -54 224 280 47 65 chr11 36164135 36164242 -112619230 + MIR SINE MIR 156 260 -2 542 299 11 17 chr11 36164750 36164924 -112618548 + MIR SINE MIR 86 258 -4 2181 112 0 0 chr11 36164956 36165260 -112618212 + AluSq SINE Alu 1 304 -9 1346 259 67 44 chr11 36165564 36166091 -112617381 + L2 LINE L2 2770 3311 -2 766 306 57 4 chr11 36166391 36166639 -112616833 + MIR SINE MIR 2 262 0 2145 122 0 0 chr11 36167121 36167425 -112616047 - AluSx SINE Alu -4 308 5 263 270 144 45 chr11 36167699 36167810 -112615662 + MIR3 SINE MIR 87 208 0 606 314 92 4 chr11 36168039 36168278 -112615194 + MIR SINE MIR 3 262 0 2699 176 22 24 chr11 36168755 36169011 -112614461 + L1MB3 LINE L1 5016 5271 -912 1688 95 29 47 chr11 36169011 36169285 -112614187 + AluSx SINE Alu 1 269 -43 2699 176 22 24 chr11 36169285 36169815 -112613657 + L1MB3 LINE L1 5271 5795 -388 373 106 0 71 chr11 36169817 36169930 -112613542 + (TA)n Simple_repeat Simple_repeat 2 106 0 1728 180 54 11 chr11 36169934 36170307 -112613165 + L1MB3 LINE L1 5782 6170 -13 207 114 0 0 chr11 36171399 36171434 -112612038 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 775 259 98 13 chr11 36172285 36172521 -112610951 - MIR SINE MIR 0 262 7 420 278 102 40 chr11 36172603 36172779 -112610693 + L2 LINE L2 3034 3220 -93 411 307 53 13 chr11 36172856 36173006 -112610466 + MER117 DNA MER1_type 40 195 -2 184 261 0 62 chr11 36173222 36173287 -112610185 - L2 LINE L2 -214 3058 2998 * 491 308 59 14 chr11 36173284 36173505 -112609967 - MIR SINE MIR -15 247 17 2186 101 0 7 chr11 36175502 36175799 -112607673 - AluSq SINE Alu -18 295 1 1714 161 34 7 chr11 36177162 36177326 -112606146 - AluJb SINE Alu -12 300 123 199 53 26 26 chr11 36177326 36177364 -112606108 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 1714 161 34 7 chr11 36177364 36177491 -112605981 - AluJb SINE Alu -189 123 1 1049 252 131 24 chr11 36177927 36178495 -112604977 + L2 LINE L2 2685 3313 0 405 304 96 0 chr11 36178493 36178628 -112604844 - MIR SINE MIR -95 167 20 * 220 274 86 68 chr11 36178639 36178756 -112604716 - L2 LINE L2 -850 2464 2346 428 274 49 0 chr11 36178808 36178910 -112604562 - L2 LINE L2 -25 3247 3141 238 297 110 17 chr11 36179021 36179139 -112604333 - L2 LINE L2 -3 3269 3141 385 317 16 0 chr11 36179158 36179281 -112604191 - L2 LINE L2 -1 3312 3188 3237 126 46 15 chr11 36179282 36179828 -112603644 + L1PB4 LINE L1 5507 6069 -87 433 248 0 0 chr11 36179857 36179958 -112603514 + L1PB4 LINE L1 6043 6143 -13 2046 124 10 0 chr11 36179963 36180269 -112603203 - AluSx SINE Alu -3 309 1 349 198 168 10 chr11 36180366 36180467 -112603005 - MIR SINE MIR -29 233 117 306 317 19 0 chr11 36180636 36180740 -112602732 + MIR SINE MIR 151 256 -6 423 38 0 0 chr11 36180964 36181017 -112602455 + (CA)n Simple_repeat Simple_repeat 2 54 0 473 319 31 12 chr11 36182099 36182262 -112601210 + MIR SINE MIR 47 212 -50 278 284 15 0 chr11 36182990 36183057 -112600415 + L2 LINE L2 3186 3253 -19 180 281 105 0 chr11 36184431 36184488 -112598984 - L2 LINE L2 -524 2790 2728 1938 125 7 7 chr11 36184769 36185072 -112598400 - AluSq SINE Alu -10 303 1 433 231 218 0 chr11 36185100 36185256 -112598216 + MIR SINE MIR 48 237 -25 21 0 0 0 chr11 36185298 36185319 -112598153 + AT_rich Low_complexity Low_complexity 1 21 0 283 133 44 0 chr11 36185992 36186037 -112597435 - L2 LINE L2 0 3272 3226 261 178 0 0 chr11 36186266 36186311 -112597161 + MIR3 SINE MIR 129 173 -35 961 175 13 61 chr11 36186614 36186842 -112596630 - AluJo SINE Alu -11 301 85 346 233 160 20 chr11 36186956 36187106 -112596366 + MIR3 SINE MIR 26 196 -12 653 261 14 21 chr11 36187644 36187786 -112595686 - MER91A DNA MER1_type 0 196 56 1029 123 19 95 chr11 36187887 36188016 -112595456 - MER3 DNA MER1_type 0 209 101 2189 113 0 0 chr11 36188016 36188326 -112595146 + AluSx SINE Alu 1 310 -2 1029 123 19 95 chr11 36188326 36188407 -112595065 - MER3 DNA MER1_type -108 101 15 290 282 94 79 chr11 36188569 36188846 -112594626 + L2 LINE L2 2935 3215 -57 321 301 55 20 chr11 36189038 36189184 -112594288 - MIR SINE MIR -89 173 23 576 309 5 48 chr11 36190537 36190744 -112592728 + MIR SINE MIR 2 199 -63 2008 120 0 16 chr11 36190965 36191281 -112592191 + AluSx SINE Alu 1 311 -1 538 291 27 7 chr11 36191618 36191766 -112591706 + MLT1K LTR MaLR 69 219 -369 839 229 68 44 chr11 36191779 36192028 -112591444 + MLT1K LTR MaLR 330 584 -4 542 15 15 0 chr11 36192339 36192406 -112591066 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 698 319 75 12 chr11 36192617 36192962 -112590510 - MLT1J1 LTR MaLR 0 446 80 820 147 89 13 chr11 36192966 36193123 -112590349 + FRAM SINE Alu 1 168 -8 412 204 11 34 chr11 36193125 36193213 -112590259 - MLT1J1 LTR MaLR -360 86 1 198 118 0 0 chr11 36194823 36194857 -112588615 + (TG)n Simple_repeat Simple_repeat 1 34 0 515 286 54 0 chr11 36195089 36195236 -112588236 - L2 LINE L2 -1 3312 3158 2540 97 102 10 chr11 36195255 36195646 -112587826 + MSTA LTR MaLR 1 427 -1 416 269 25 17 chr11 36195650 36195769 -112587703 - L2 LINE L2 -7 3306 3187 323 268 73 49 chr11 36196776 36196940 -112586532 - MIR SINE MIR -56 206 39 698 224 64 65 chr11 36197043 36197289 -112586183 + MIR SINE MIR 2 241 -21 266 261 254 29 chr11 36197369 36197676 -112585796 - L1ME4a LINE L1 -39 6082 5707 2093 109 3 0 chr11 36197676 36197970 -112585502 + AluSq SINE Alu 13 307 -6 30 0 0 0 chr11 36197974 36198004 -112585468 + AT_rich Low_complexity Low_complexity 1 30 0 302 125 0 0 chr11 36198004 36198044 -112585428 - Alu SINE Alu -263 40 1 594 267 35 23 chr11 36198045 36198217 -112585255 + L1ME3A LINE L1 5478 5651 -511 1408 213 54 30 chr11 36198222 36198405 -112585067 - MER58B DNA MER1_type -2079 341 145 1831 144 0 29 chr11 36198405 36198718 -112584754 - AluJb SINE Alu -8 304 1 1408 213 54 30 chr11 36198718 36198867 -112584605 - MER58B DNA MER1_type -2275 145 1 573 274 51 29 chr11 36198880 36199055 -112584417 + MER5A DNA MER1_type 9 187 -2 486 224 60 101 chr11 36199074 36199305 -112584167 + L1ME3A LINE L1 5665 5854 -310 1451 159 4 12 chr11 36199305 36199557 -112583915 + AluJo SINE Alu 42 291 -21 486 224 60 101 chr11 36199557 36199645 -112583827 + L1ME3A LINE L1 5854 5944 -220 601 224 54 54 chr11 36199709 36199914 -112583558 + L1ME3A LINE L1 5965 6169 -1 609 242 174 11 chr11 36200659 36200849 -112582623 + MLT1J LTR MaLR 22 242 -269 1565 166 69 0 chr11 36200925 36201202 -112582270 - AluJb SINE Alu -16 296 1 231 36 0 0 chr11 36201222 36201250 -112582222 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 359 230 0 0 chr11 36201250 36201324 -112582148 + MLT1J LTR MaLR 438 511 0 225 254 0 0 chr11 36201336 36201391 -112582081 + L1ME4a LINE L1 5718 5772 -349 337 272 52 108 chr11 36201405 36201637 -112581835 - L2 LINE L2 0 3313 3095 183 315 27 0 chr11 36201738 36201811 -112581661 + L2 LINE L2 3239 3313 0 315 205 0 13 chr11 36201830 36201908 -112581564 + L1ME4a LINE L1 6044 6120 -1 249 169 17 34 chr11 36202766 36202825 -112580647 - MIR SINE MIR -89 173 116 2012 191 54 54 chr11 36202976 36203022 -112580450 + MLT1D LTR MaLR 1 46 -459 2412 53 0 7 chr11 36203022 36203322 -112580150 + AluY SINE Alu 1 298 -13 2012 191 54 54 chr11 36203322 36203779 -112579693 + MLT1D LTR MaLR 45 504 -1 1656 171 0 16 chr11 36204082 36204386 -112579086 + AluJb SINE Alu 2 300 -12 293 231 10 106 chr11 36204589 36204627 -112578845 + MIR SINE MIR 168 208 -54 2151 112 0 6 chr11 36204627 36204940 -112578532 + AluSx SINE Alu 1 311 -1 293 231 10 106 chr11 36204940 36205005 -112578467 + MIR SINE MIR 208 261 -1 637 186 211 0 chr11 36205076 36205232 -112578240 - MER5A DNA MER1_type 0 189 1 483 190 13 0 chr11 36205261 36205340 -112578132 + L2 LINE L2 3234 3313 0 738 233 116 23 chr11 36206863 36206973 -112576499 + MIR SINE MIR 28 126 -136 2616 87 34 14 chr11 36206973 36207330 -112576142 + THE1B LTR MaLR 1 364 0 738 233 116 23 chr11 36207330 36207434 -112576038 + MIR SINE MIR 126 262 0 291 345 118 0 chr11 36207509 36207619 -112575853 - MIR3 SINE MIR -15 193 71 551 243 38 47 chr11 36208073 36208278 -112575194 - L1MC5 LINE L1 -48 7913 7709 1982 96 10 10 chr11 36208278 36208569 -112574903 - AluSg SINE Alu -19 291 1 551 243 38 47 chr11 36208569 36208598 -112574874 - L1MC5 LINE L1 -252 7709 7681 2135 120 0 0 chr11 36208600 36208901 -112574571 + AluSx SINE Alu 1 301 -11 393 215 82 6 chr11 36209006 36209164 -112574308 - L1ME4a LINE L1 -239 5882 5713 766 260 62 121 chr11 36209188 36209718 -112573754 + MLT1J LTR MaLR 9 507 -4 227 295 38 95 chr11 36209737 36209947 -112573525 + L2 LINE L2 3116 3313 0 199 359 0 0 chr11 36209966 36210030 -112573442 + MIR SINE MIR 83 146 -62 209 296 56 28 chr11 36210149 36210257 -112573215 - L2 LINE L2 -376 2937 2827 1968 147 0 0 chr11 36210280 36210573 -112572899 - AluJb SINE Alu -19 293 1 272 264 161 0 chr11 36210619 36210706 -112572766 + MIR SINE MIR 162 262 0 2984 151 9 52 chr11 36211061 36211115 -112572357 + L1MB5 LINE L1 5391 5446 -728 1788 149 12 16 chr11 36211115 36211437 -112572035 + L1MC1 LINE L1 6013 6333 0 1841 50 12 8 chr11 36211437 36211694 -112571778 + L1PA7 LINE L1 5896 6157 0 2984 151 9 52 chr11 36211694 36212302 -112571170 + L1MB5 LINE L1 5444 5994 -180 1684 180 25 0 chr11 36212550 36212866 -112570606 + MER33 DNA MER1_type 1 324 0 446 234 0 57 chr11 36214396 36214537 -112568935 - MIR3 SINE MIR -30 178 46 1824 220 149 31 chr11 36215189 36215415 -112568057 + MLT1G LTR MaLR 12 210 -380 2163 108 21 0 chr11 36215415 36215702 -112567770 + AluSx SINE Alu 1 293 -19 1824 220 149 31 chr11 36215702 36215993 -112567479 + MLT1G LTR MaLR 210 590 0 808 281 74 53 chr11 36216799 36217229 -112566243 - MLT1H LTR MaLR -110 439 1 805 239 73 36 chr11 36217339 36217586 -112565886 + MIR SINE MIR 7 262 0 548 286 113 0 chr11 36217822 36218035 -112565437 + L1ME4a LINE L1 5657 5893 -228 1897 220 78 103 chr11 36218244 36218568 -112564904 + L1ME3A LINE L1 5374 5705 -465 1668 174 25 0 chr11 36218568 36218843 -112564629 + AluJo SINE Alu 1 282 -30 216 0 0 0 chr11 36218846 36218870 -112564602 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1897 220 78 103 chr11 36218870 36219285 -112564187 + L1ME3A LINE L1 5707 6097 -73 2001 123 36 0 chr11 36219285 36219586 -112563886 + AluSq SINE Alu 1 312 -1 1897 220 78 103 chr11 36219586 36219654 -112563818 + L1ME3A LINE L1 6097 6165 -5 3280 106 58 59 chr11 36221437 36222020 -112561452 - LTR10A LTR ERV1 -2 631 1 338 373 19 19 chr11 36222826 36222987 -112560485 - L2 LINE L2 -2 3270 3110 21 36 0 0 chr11 36223189 36223217 -112560255 + AT_rich Low_complexity Low_complexity 1 28 0 219 260 91 13 chr11 36223219 36223296 -112560176 - L3b LINE CR1 -290 1293 1211 259 319 14 0 chr11 36224604 36224676 -112558796 - L2 LINE L2 -56 3216 3144 284 355 81 0 chr11 36224794 36224918 -112558554 + MIR3 SINE MIR 33 166 -42 1173 249 46 18 chr11 36224921 36225310 -112558162 - LTR16B LTR ERVL -3 461 62 332 326 62 8 chr11 36225796 36225925 -112557547 + MIR SINE MIR 32 167 -95 1266 151 16 69 chr11 36225927 36226205 -112557267 + AluJb SINE Alu 64 312 0 314 266 0 88 chr11 36226205 36226318 -112557154 + MIR SINE MIR 158 260 -2 183 302 5 111 chr11 36226664 36226853 -112556619 - L2 LINE L2 -439 2875 2707 183 42 0 0 chr11 36227579 36227603 -112555869 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1638 183 4 4 chr11 36227607 36227886 -112555586 - AluJb SINE Alu -33 279 1 932 218 30 42 chr11 36228036 36228298 -112555174 - MIR SINE MIR -1 261 3 289 278 175 0 chr11 36228393 36228490 -112554982 + L2 LINE L2 3155 3268 -4 1366 169 81 153 chr11 36228730 36229205 -112554267 + MLT1D LTR MaLR 1 435 -70 2205 99 0 0 chr11 36229205 36229511 -112553961 - AluSq SINE Alu 0 306 1 1366 169 81 153 chr11 36229511 36229578 -112553894 + MLT1D LTR MaLR 435 505 0 184 282 0 0 chr11 36229593 36229632 -112553840 - L2 LINE L2 -77 3236 3198 761 248 52 17 chr11 36229809 36230039 -112553433 - MIR SINE MIR -17 245 8 2033 122 7 0 chr11 36230300 36230604 -112552868 + AluSx SINE Alu 3 308 0 590 239 149 11 chr11 36230924 36231112 -112552360 - MIR SINE MIR -26 236 23 1822 156 13 19 chr11 36231964 36232271 -112551201 + AluJo SINE Alu 1 305 -7 2266 108 0 0 chr11 36233021 36233318 -112550154 - AluSx SINE Alu -14 298 2 797 144 7 62 chr11 36233319 36233465 -112550007 - FLAM_C SINE Alu -2 141 4 563 269 127 5 chr11 36233578 36233775 -112549697 + MIR SINE MIR 42 262 0 527 375 18 13 chr11 36233904 36234128 -112549344 - L3 LINE CR1 -133 1444 1220 456 104 0 0 chr11 36234874 36234941 -112548531 + (TCCA)n Simple_repeat Simple_repeat 4 70 0 507 204 14 63 chr11 36234943 36235085 -112548387 - L2 LINE L2 -4 3268 3134 233 258 0 32 chr11 36235282 36235344 -112548128 + L2 LINE L2 3254 3313 0 295 272 136 19 chr11 36235992 36236095 -112547377 - MIR SINE MIR -5 257 143 2630 40 0 0 chr11 36236119 36236417 -112547055 - AluYa5 SINE Alu -13 298 1 1081 197 25 29 chr11 36236421 36236660 -112546812 + MLT2B1 LTR ERVL 8 245 -169 486 0 0 0 chr11 36236747 36236801 -112546671 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 2100 85 46 0 chr11 36237394 36237677 -112545795 - AluSg SINE Alu -13 297 2 1804 108 8 8 chr11 36237782 36238040 -112545432 - L1PA13 LINE L1 -5 6158 5901 233 174 0 0 chr11 36238094 36238140 -112545332 - LTR66 LTR ERVL -161 449 404 309 51 0 0 chr11 36238279 36238318 -112545154 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 1110 248 45 99 chr11 36238322 36238864 -112544608 - L2 LINE L2 -8 3305 2798 737 316 88 17 chr11 36239466 36239962 -112543510 - L2 LINE L2 -11 3302 2771 314 256 68 8 chr11 36240093 36240210 -112543262 - MIR SINE MIR -75 187 64 2381 154 77 23 chr11 36240277 36240369 -112543103 + L1M4 LINE L1 3370 3456 -2690 2070 138 7 0 chr11 36240369 36240673 -112542799 + AluSx SINE Alu 1 306 -6 2381 154 77 23 chr11 36240673 36241060 -112542412 + L1M4 LINE L1 3456 3875 -2271 24 53 0 0 chr11 36241290 36241328 -112542144 + AT_rich Low_complexity Low_complexity 1 38 0 564 163 22 0 chr11 36241617 36241709 -112541763 - AluJo SINE Alu -176 136 43 235 224 0 0 chr11 36242433 36242482 -112540990 + Alu SINE Alu 250 298 -3 1018 253 48 11 chr11 36242511 36242601 -112540871 + L1M4 LINE L1 4957 5042 -1104 1732 191 0 9 chr11 36242601 36242916 -112540556 + AluJo SINE Alu 1 312 0 1018 253 48 11 chr11 36242916 36243177 -112540295 + L1M4 LINE L1 5042 5321 -825 953 143 77 3 chr11 36243671 36243856 -112539616 - THE1C LTR MaLR -208 167 1 254 158 0 0 chr11 36243860 36243898 -112539574 + LTR39 LTR ERV1 739 776 -7 1778 235 82 67 chr11 36243958 36244627 -112538845 + LTR8A LTR ERV1 34 712 -15 1123 135 18 42 chr11 36244970 36245156 -112538316 + MLT1B LTR MaLR 1 176 -198 1293 208 47 11 chr11 36245156 36245430 -112538042 + AluSq SINE Alu 1 284 -19 1123 135 18 42 chr11 36245430 36245469 -112538003 + MLT1B LTR MaLR 176 214 -160 259 270 0 0 chr11 36245480 36245543 -112537929 + MLT1B LTR MaLR 170 232 -158 21 0 0 0 chr11 36246416 36246437 -112537035 + AT_rich Low_complexity Low_complexity 1 21 0 300 221 0 0 chr11 36247280 36247357 -112536115 + (CA)n Simple_repeat Simple_repeat 2 78 0 1295 112 103 28 chr11 36248626 36248840 -112534632 + MER30 DNA MER1_type 1 230 0 258 263 40 112 chr11 36249092 36249244 -112534228 - LTR8A LTR ERV1 -16 711 571 353 289 169 20 chr11 36249810 36250011 -112533461 - L2 LINE L2 0 3313 3083 353 331 159 26 chr11 36250031 36250182 -112533290 - MER5A DNA MER1_type -6 183 13 440 283 136 29 chr11 36250188 36250456 -112533016 - L2 LINE L2 -275 3038 2740 314 241 8 65 chr11 36250463 36250504 -112532968 - MLT2D LTR ERVL 0 414 414 438 101 0 0 chr11 36250504 36250573 -112532899 + (TG)n Simple_repeat Simple_repeat 2 70 0 314 241 8 65 chr11 36250573 36250642 -112532830 - MLT2D LTR ERVL 0 414 343 7605 143 8 45 chr11 36251306 36252736 -112530736 + L1P LINE L1 907 2284 -3862 2184 112 0 3 chr11 36252900 36253186 -112530286 - AluSx SINE Alu -27 285 1 307 324 65 7 chr11 36253537 36253676 -112529796 + L2 LINE L2 3167 3313 0 2164 187 65 47 chr11 36253787 36254386 -112529086 + LTR39 LTR ERV1 1 610 -173 240 140 0 20 chr11 36254525 36254575 -112528897 + L1MA8 LINE L1 6236 6284 -7 253 316 32 0 chr11 36256664 36256759 -112526713 - MIR SINE MIR -57 151 54 22 0 0 0 chr11 36259235 36259257 -112524215 + AT_rich Low_complexity Low_complexity 1 22 0 324 0 0 0 chr11 36259290 36259326 -112524146 + (GA)n Simple_repeat Simple_repeat 1 36 0 1431 219 11 0 chr11 36259327 36259601 -112523871 - AluJo SINE Alu -35 277 1 704 154 62 8 chr11 36259802 36259932 -112523540 - LTR8 LTR ERV1 -554 137 1 23 0 0 0 chr11 36260538 36260561 -112522911 + AT_rich Low_complexity Low_complexity 1 23 0 283 279 57 33 chr11 36260924 36261046 -112522426 + MIR SINE MIR 111 235 -27 253 392 26 10 chr11 36261264 36261458 -112522014 - L2 LINE L2 -632 2682 2486 477 368 135 18 chr11 36261467 36262143 -112521329 - L2 LINE L2 -1442 1872 1118 225 271 102 17 chr11 36262272 36262390 -112521082 - L2 LINE L2 -1218 2096 1969 4570 206 75 11 chr11 36262577 36263647 -112519825 - L1M2 LINE L1 -4499 2350 1213 247 343 39 39 chr11 36263952 36264054 -112519418 - L2 LINE L2 -23 3249 3148 204 319 199 0 chr11 36264201 36264342 -112519130 - L2 LINE L2 -300 2972 2804 2496 177 33 2 chr11 36264371 36264790 -112518682 + MSTB1 LTR MaLR 1 432 0 272 287 105 14 chr11 36265435 36265578 -112517894 + L1MC/D LINE L1 5625 5780 -2028 8129 74 5 3 chr11 36266627 36267785 -112515687 + L1P LINE L1 3620 4779 -1367 1482 119 0 0 chr11 36267890 36268092 -112515380 - AluSq SINE Alu -111 202 1 203 353 84 17 chr11 36268531 36268650 -112514822 - L2 LINE L2 -23 3249 3123 392 215 0 89 chr11 36268670 36268725 -112514747 + L1ME LINE L1 5435 5493 -677 1857 157 0 0 chr11 36268725 36269005 -112514467 + AluJb SINE Alu 1 280 -32 200 83 0 28 chr11 36269008 36269044 -112514428 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 392 215 0 89 chr11 36269044 36269119 -112514353 + L1ME LINE L1 5495 5557 -613 425 239 0 43 chr11 36269126 36269310 -112514162 + AluJo SINE Alu 1 176 -136 227 79 26 0 chr11 36269394 36269432 -112514040 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 1175 147 147 0 chr11 36271928 36272146 -112511326 + Tigger3(Golem) DNA MER2_type 2780 3029 0 478 211 204 0 chr11 36272159 36272301 -112511171 + L1MB4 LINE L1 5477 5647 -533 1911 178 80 2 chr11 36272303 36272714 -112510758 - Tigger2 DNA MER2_type -3 2715 2273 435 132 15 0 chr11 36272704 36272772 -112510700 - Tigger2 DNA MER2_type -2649 69 1 * 2442 174 13 2 chr11 36272778 36273255 -112510217 + L1MB4 LINE L1 5651 6132 -48 8572 71 0 14 chr11 36273394 36274570 -112508902 - L1P LINE L1 -4930 1216 58 1955 92 19 45 chr11 36274728 36275012 -112508460 + L1PA7 LINE L1 5841 6118 -36 2287 79 7 16 chr11 36275012 36275316 -112508156 - AluY SINE Alu -9 302 2 1955 92 19 45 chr11 36275316 36275345 -112508127 + L1PA7 LINE L1 6118 6146 -8 24 0 0 0 chr11 36275669 36275693 -112507779 + AT_rich Low_complexity Low_complexity 1 24 0 3667 34 0 5 chr11 36275791 36276232 -112507240 - L1PA5 LINE L1 -8 6146 5708 1205 287 71 5 chr11 36276366 36276774 -112506698 - Zaphod DNA AcHobo -3552 479 45 688 275 110 14 chr11 36276892 36277110 -112506362 - MER69 DNA AcHobo -744 482 244 1059 268 76 5 chr11 36277251 36277804 -112505668 + MER69 DNA AcHobo 1461 2052 -474 25 90 0 0 chr11 36277857 36277924 -112505548 + AT_rich Low_complexity Low_complexity 1 67 0 1720 144 26 0 chr11 36278724 36279037 -112504435 + L1MA9 LINE L1 5991 6311 -1 324 210 116 80 chr11 36279102 36279240 -112504232 - L1ME LINE L1 -302 5819 5677 460 327 145 35 chr11 36279326 36279644 -112503828 - L2 LINE L2 0 3272 2920 534 272 235 14 chr11 36279942 36280155 -112503317 + MIR SINE MIR 3 262 0 697 197 8 0 chr11 36280338 36280460 -112503012 + FLAM_C SINE Alu 1 123 -20 25 31 0 0 chr11 36280460 36280492 -112502980 + AT_rich Low_complexity Low_complexity 1 32 0 895 211 19 31 chr11 36281358 36281619 -112501853 - MER2 DNA MER2_type -81 264 7 243 338 186 14 chr11 36281929 36282074 -112501398 + L2 LINE L2 3097 3266 -6 25 31 0 0 chr11 36282546 36282578 -112500894 + AT_rich Low_complexity Low_complexity 1 32 0 241 282 0 0 chr11 36283384 36283455 -112500017 - L1P5 LINE L1 -577 5577 5507 231 203 0 0 chr11 36285119 36285183 -112498289 + CT-rich Low_complexity Low_complexity 1 64 0 1562 199 11 4 chr11 36285299 36285570 -112497902 + AluJo SINE Alu 3 275 -37 261 75 0 0 chr11 36285570 36285610 -112497862 + (TCTA)n Simple_repeat Simple_repeat 4 43 0 333 62 0 0 chr11 36285755 36285803 -112497669 + (C)n Simple_repeat Simple_repeat 1 48 0 1119 268 24 0 chr11 36286021 36286360 -112497112 + L1 LINE L1 3911 4257 -1889 1189 235 46 26 chr11 36286432 36286853 -112496619 + MER66A LTR ERV1 164 478 0 806 226 92 14 chr11 36286854 36287222 -112496250 + L1 LINE L1 4295 4691 -1455 9040 48 3 1 chr11 36287350 36288541 -112494931 + L1P LINE L1 1455 2648 -3498 254 365 31 13 chr11 36288642 36288801 -112494671 + L2 LINE L2 2897 3058 -214 252 0 0 0 chr11 36289034 36289062 -112494410 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 1575 172 20 7 chr11 36289442 36289739 -112493733 + L1P3 LINE L1 10 310 -6151 805 134 76 6 chr11 36290724 36290881 -112492591 + Tigger3(Golem) DNA MER2_type 2589 2756 -273 1342 90 0 48 chr11 36290938 36291126 -112492346 - AluSq SINE Alu -134 179 1 276 189 0 0 chr11 36291126 36291179 -112492293 + AluSg/x SINE Alu 187 239 -61 1868 129 0 0 chr11 36291185 36291471 -112492001 + Tigger3(Golem) DNA MER2_type 2743 3028 -1 540 252 130 0 chr11 36291592 36291723 -112491749 - MIR SINE MIR -72 190 43 354 273 0 0 chr11 36292429 36292506 -112490966 + L2 LINE L2 3231 3307 -6 862 28 9 0 chr11 36292942 36293050 -112490422 - L1P2 LINE L1 -419 5736 5628 4382 157 38 45 chr11 36293078 36294172 -112489300 - L1MA6 LINE L1 -145 6155 5057 939 191 5 5 chr11 36294172 36294361 -112489111 + L1MA6 LINE L1 4887 5075 -1071 316 175 31 15 chr11 36294355 36294499 -112488973 - L1P LINE L1 -832 5314 5168 * 6950 57 10 0 chr11 36294737 36296492 -112486980 + L1PA6 LINE L1 4379 6152 -2 258 32 0 0 chr11 36298229 36298260 -112485212 + (TA)n Simple_repeat Simple_repeat 2 32 0 2246 98 7 3 chr11 36298370 36298665 -112484807 - AluSg SINE Alu -14 296 1 458 274 37 56 chr11 36299165 36299380 -112484092 - MIR SINE MIR 0 262 52 452 175 10 10 chr11 36299674 36299771 -112483701 + MSTB1 LTR MaLR 7 103 -329 2020 111 14 17 chr11 36300197 36300494 -112482978 + AluSq SINE Alu 1 296 -17 841 172 6 56 chr11 36300496 36300676 -112482796 + AluSg/x SINE Alu 137 307 -5 1794 114 54 14 chr11 36301118 36301398 -112482074 + AluSc SINE Alu 2 292 -17 553 290 84 35 chr11 36301407 36301693 -112481779 - MLT1I LTR MaLR -91 318 19 1584 73 23 0 chr11 36302628 36302848 -112480624 + L1PA7 LINE L1 5778 6002 -152 231 91 0 0 chr11 36302988 36303021 -112480451 + L1PA7 LINE L1 6097 6129 -25 2240 95 7 13 chr11 36303021 36303327 -112480145 - AluSq SINE Alu -9 304 1 234 170 0 21 chr11 36303328 36303375 -112480097 + MLT1I LTR MaLR 363 408 -1 21 57 0 0 chr11 36303819 36303854 -112479618 + AT_rich Low_complexity Low_complexity 1 35 0 1925 162 28 7 chr11 36303942 36304259 -112479213 + AluJb SINE Alu 1 312 0 317 207 0 0 chr11 36304458 36304516 -112478956 - MLT1H1 LTR MaLR -2 553 496 207 0 0 0 chr11 36304516 36304539 -112478933 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 257 136 0 23 chr11 36304539 36304583 -112478889 - Alu SINE Alu -19 283 241 1828 160 7 3 chr11 36305195 36305488 -112477984 + AluJb SINE Alu 19 312 0 180 250 0 0 chr11 36305500 36305544 -112477928 + MIR SINE MIR 219 262 0 2342 66 10 3 chr11 36306237 36306539 -112476933 - AluY SINE Alu 0 311 8 279 335 81 6 chr11 36307133 36307294 -112476178 - MIR SINE MIR -24 238 66 23 54 0 0 chr11 36307317 36307354 -112476118 + AT_rich Low_complexity Low_complexity 1 37 0 207 0 0 0 chr11 36307505 36307528 -112475944 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 23353 50 11 11 chr11 36308170 36311421 -112472051 + L1P LINE L1 2131 5380 -766 879 237 290 5 chr11 36313197 36313638 -112469834 - L2 LINE L2 -4 3309 2748 260 270 0 16 chr11 36313818 36313881 -112469591 + MER5A DNA MER1_type 128 189 0 410 249 61 61 chr11 36313908 36314073 -112469399 + MER58B DNA MER1_type 177 341 0 1342 90 0 48 chr11 36314089 36314277 -112469195 + AluSq SINE Alu 1 179 -134 1172 73 90 0 chr11 36314336 36314513 -112468959 - Tigger3(Golem) DNA MER2_type -276 2753 2561 624 138 0 37 chr11 36314516 36314625 -112468847 + AluJb SINE Alu 1 105 -207 189 0 0 0 chr11 36315107 36315128 -112468344 + (CA)n Simple_repeat Simple_repeat 2 22 0 272 175 0 50 chr11 36316146 36316226 -112467246 - L1MA10 LINE L1 -3 6331 6256 1839 208 76 37 chr11 36316248 36316891 -112466581 - L1M4 LINE L1 -1197 4949 4282 411 239 61 35 chr11 36316920 36317117 -112466355 - Tigger4(Zombi) DNA MER2_type -1 2730 2529 1228 277 37 13 chr11 36317254 36317629 -112465843 + MLT1E2 LTR MaLR 242 625 -1 1877 137 3 20 chr11 36319113 36319405 -112464067 - AluSq SINE Alu -26 287 1 2348 93 0 3 chr11 36319531 36319822 -112463650 - AluSx SINE Alu -22 290 1 2289 99 0 13 chr11 36320656 36320959 -112462513 - AluSx SINE Alu -13 299 1 2194 126 8 14 chr11 36321108 36321465 -112462007 - L1MA8 LINE L1 0 6291 5937 359 340 32 19 chr11 36321854 36322010 -112461462 + L2 LINE L2 2682 2839 -475 212 152 43 0 chr11 36322458 36322504 -112460968 + (TATG)n Simple_repeat Simple_repeat 4 51 0 2250 85 7 0 chr11 36323315 36323597 -112459875 - AluSg SINE Alu -26 284 1 303 280 112 8 chr11 36323628 36323753 -112459719 + MIR3 SINE MIR 50 187 -21 517 275 140 0 chr11 36324294 36324472 -112459000 - MIR SINE MIR -40 222 20 28 0 0 0 chr11 36324684 36324712 -112458760 + AT_rich Low_complexity Low_complexity 1 28 0 912 130 45 0 chr11 36324831 36324985 -112458487 + LTR41 LTR ERVL 1 161 -612 1762 51 182 12 chr11 36324986 36325239 -112458233 - AluY SINE Alu -15 296 1 508 265 15 0 chr11 36325349 36325485 -112457987 + MIR SINE MIR 42 179 -83 469 375 18 13 chr11 36325675 36325899 -112457573 - L3 LINE CR1 -133 1444 1220 492 99 0 0 chr11 36326645 36326716 -112456756 + (TCCA)n Simple_repeat Simple_repeat 4 74 0 459 204 14 63 chr11 36326718 36326860 -112456612 - L2 LINE L2 -4 3268 3134 220 254 17 0 chr11 36327062 36327121 -112456351 + L2 LINE L2 3254 3313 0 268 297 119 0 chr11 36327776 36327877 -112455595 - MIR SINE MIR -7 255 143 2316 86 0 0 chr11 36327901 36328193 -112455279 - AluYa5 SINE Alu -13 298 7 181 344 115 54 chr11 36328557 36329054 -112454418 - L3 LINE CR1 -727 850 324 6306 165 14 12 chr11 36329675 36330806 -112452666 + Tigger4(Zombi) DNA MER2_type 705 1837 -894 800 169 0 0 chr11 36330981 36331099 -112452373 + FLAM_C SINE Alu 1 118 -25 942 202 33 0 chr11 36332321 36332504 -112450968 + MER5A DNA MER1_type 1 189 0 337 307 51 89 chr11 36332517 36332718 -112450754 + L2 LINE L2 189 371 -2943 1745 174 0 11 chr11 36332718 36333000 -112450472 - AluJo SINE Alu -31 281 3 337 307 51 89 chr11 36333000 36333169 -112450303 + L2 LINE L2 371 545 -2769 1553 95 5 5 chr11 36333171 36333381 -112450091 + MLT2B1 LTR ERVL 2 211 -309 843 147 0 31 chr11 36333382 36333511 -112449961 + FLAM_C SINE Alu 2 126 -17 657 175 8 50 chr11 36333516 36333540 -112449932 + MLT2B1 LTR ERVL 199 222 -293 402 21 0 0 chr11 36333540 36333587 -112449885 + (TC)n Simple_repeat Simple_repeat 2 48 0 2028 116 3 14 chr11 36333587 36333881 -112449591 - AluSp SINE Alu -22 291 1 657 175 8 50 chr11 36333881 36333975 -112449497 + MLT2B1 LTR ERVL 220 313 -202 448 297 33 6 chr11 36334005 36334187 -112449285 - L2 LINE L2 -557 2757 2571 2214 117 3 0 chr11 36334194 36334494 -112448978 - AluSx SINE Alu -11 301 1 343 215 51 13 chr11 36334534 36334613 -112448859 + MER5A DNA MER1_type 8 89 -100 374 286 104 11 chr11 36334901 36335083 -112448389 + L2 LINE L2 1721 1919 -1395 1211 288 114 40 chr11 36335389 36335765 -112447707 + L2 LINE L2 1930 2276 -1038 1986 114 0 17 chr11 36335765 36336101 -112447371 + AluSq SINE Alu 1 331 0 1211 288 114 40 chr11 36336101 36336458 -112447014 + L2 LINE L2 2276 2719 -595 216 0 0 0 chr11 36336841 36336865 -112446607 + (TA)n Simple_repeat Simple_repeat 2 25 0 2191 103 0 27 chr11 36337203 36337504 -112445968 - AluSg SINE Alu -16 294 2 2030 150 7 0 chr11 36337505 36337799 -112445673 - AluSx SINE Alu -14 298 3 1336 189 42 39 chr11 36338064 36338370 -112445102 - AluJo SINE Alu -5 307 1 925 262 197 29 chr11 36338508 36338893 -112444579 - MLT1G LTR MaLR 0 590 141 1612 191 0 92 chr11 36339542 36339967 -112443505 - MLT1B LTR MaLR -4 386 1 2265 101 3 3 chr11 36340362 36340660 -112442812 + AluSp SINE Alu 1 298 -15 639 288 70 4 chr11 36341281 36341524 -112441948 - MIR SINE MIR 0 262 4 252 374 93 22 chr11 36341550 36341689 -112441783 + MIR SINE MIR 23 171 -91 809 137 17 0 chr11 36341847 36341964 -112441508 + FLAM_C SINE Alu 1 119 -24 32 35 0 18 chr11 36341964 36341998 -112441474 + AT_rich Low_complexity Low_complexity 1 35 -21 2028 147 0 0 chr11 36341998 36342284 -112441188 - AluSx SINE Alu -24 288 3 32 35 0 18 chr11 36342284 36342306 -112441166 + AT_rich Low_complexity Low_complexity 35 56 0 916 138 0 0 chr11 36342574 36342704 -112440768 + FLAM_C SINE Alu 1 130 -3 727 294 174 31 chr11 36343118 36343328 -112440144 + L2 LINE L2 1466 1645 -1669 1980 154 13 3 chr11 36343328 36343634 -112439838 + AluJb SINE Alu 3 311 -1 727 294 174 31 chr11 36343634 36344028 -112439444 + L2 LINE L2 1645 2156 -1158 1120 133 17 33 chr11 36344028 36344209 -112439263 - AluSx SINE Alu -1 309 132 606 109 0 40 chr11 36344209 36344310 -112439162 - L1PA8 LINE L1 0 6172 6076 2682 65 6 0 chr11 36344311 36344647 -112438825 - L1PA8 LINE L1 -30 6142 5805 1028 94 0 0 chr11 36344664 36344791 -112438681 - AluSx SINE Alu -178 134 8 1416 315 56 42 chr11 36344794 36345598 -112437874 + L2 LINE L2 2154 2968 -346 1969 119 10 26 chr11 36346080 36346218 -112437254 + AluSx SINE Alu 1 140 -172 2329 96 0 0 chr11 36346218 36346511 -112436961 + AluY SINE Alu 1 293 -18 1969 119 10 26 chr11 36346511 36346675 -112436797 + AluSx SINE Alu 140 298 -14 1343 141 4 18 chr11 36346760 36346987 -112436485 - AluJo SINE Alu -1 311 88 480 282 118 12 chr11 36347292 36347462 -112436010 - MIR SINE MIR -70 192 5 2028 134 0 3 chr11 36347665 36347971 -112435501 - AluSx SINE Alu 0 305 1 957 130 0 0 chr11 36347992 36348130 -112435342 - FRAM SINE Alu -8 168 31 2346 107 0 0 chr11 36348273 36348571 -112434901 - AluSg SINE Alu -12 298 1 923 114 0 15 chr11 36348924 36349056 -112434416 + FLAM_C SINE Alu 1 130 -3 731 178 82 14 chr11 36349451 36349597 -112433875 - FAM SINE Alu -18 167 12 513 169 66 25 chr11 36349806 36349960 -112433512 - Tigger3(Golem) DNA MER2_type -686 2343 1 2149 135 0 0 chr11 36350018 36350321 -112433151 - AluSx SINE Alu -9 303 1 1957 111 35 3 chr11 36351018 36351306 -112432166 - AluSq SINE Alu -16 297 1 180 182 0 0 chr11 36351809 36351853 -112431619 + (CACCAT)n Simple_repeat Simple_repeat 5 48 0 2080 96 0 21 chr11 36352550 36352832 -112430640 - AluSx SINE Alu -23 289 14 1833 177 0 10 chr11 36353212 36353517 -112429955 + AluJb SINE Alu 1 302 -10 262 261 42 21 chr11 36353533 36353675 -112429797 - L1ME4a LINE L1 -16 6105 5961 414 58 0 0 chr11 36354608 36354660 -112428812 - MADE1 DNA Mariner 0 80 29 489 262 35 0 chr11 36355281 36355426 -112428046 - L2 LINE L2 -6 3307 3158 4542 146 71 33 chr11 36355430 36356543 -112426929 + L1MB7 LINE L1 5021 6175 -9 2013 143 13 3 chr11 36356560 36356868 -112426604 + AluSx SINE Alu 1 311 -1 34 42 0 0 chr11 36357005 36357053 -112426419 + AT_rich Low_complexity Low_complexity 1 48 0 1809 127 21 28 chr11 36357298 36357581 -112425891 + AluSq SINE Alu 1 281 -32 261 0 0 0 chr11 36357581 36357610 -112425862 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 358 131 16 0 chr11 36357611 36357672 -112425800 - L1MA10 LINE L1 -7 6327 6266 1031 192 0 11 chr11 36357706 36357883 -112425589 - FAM SINE Alu 0 175 1 207 261 0 0 chr11 36358282 36358351 -112425121 + L2 LINE L2 2593 2661 -653 228 163 0 0 chr11 36358389 36358432 -112425040 + (CA)n Simple_repeat Simple_repeat 1 43 0 335 279 82 55 chr11 36358454 36358860 -112424612 + L2 LINE L2 2683 3091 -181 2000 159 0 0 chr11 36359357 36359646 -112423826 + AluJo SINE Alu 1 289 -23 477 257 181 12 chr11 36359833 36360004 -112423468 - MIR SINE MIR -60 202 3 206 271 57 41 chr11 36360004 36360105 -112423367 + L2 LINE L2 3207 3309 -4 351 238 24 0 chr11 36360128 36360212 -112423260 - L2 LINE L2 0 3272 3187 193 326 12 0 chr11 36360221 36360307 -112423165 - L3 LINE CR1 -33 1544 1458 250 257 29 48 chr11 36360404 36360509 -112422963 - L3 LINE CR1 -293 1284 1182 1953 146 3 0 chr11 36360579 36360866 -112422606 + AluJb SINE Alu 2 289 -23 317 296 68 0 chr11 36360890 36360978 -112422494 - L2 LINE L2 -36 3236 3143 371 83 17 0 chr11 36361316 36361376 -112422096 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 267 307 10 0 chr11 36361500 36361601 -112421871 + MIR SINE MIR 157 258 -4 257 303 40 10 chr11 36361625 36361724 -112421748 - L3 LINE CR1 -811 766 665 458 275 13 13 chr11 36362229 36362378 -112421094 + MER103 DNA DNA 2 150 -16 204 171 0 0 chr11 36362404 36362418 -112421054 + A-rich Low_complexity Low_complexity 1 14 -27 2645 48 0 10 chr11 36362418 36362732 -112420740 + AluY SINE Alu 1 311 0 204 171 0 0 chr11 36362732 36362758 -112420714 + A-rich Low_complexity Low_complexity 13 41 0 2479 83 0 6 chr11 36363084 36363398 -112420074 + AluSx SINE Alu 1 312 0 2373 88 0 25 chr11 36363744 36364063 -112419409 + AluSx SINE Alu 1 311 -1 2039 126 37 62 chr11 36364122 36364201 -112419271 - MER47A DNA MER2_type -1957 366 287 2026 82 44 7 chr11 36364201 36364498 -112418974 + AluY SINE Alu 3 309 0 2039 126 37 62 chr11 36364498 36364791 -112418681 - MER47A DNA MER2_type -2036 287 2 1916 139 29 0 chr11 36364926 36365206 -112418266 + AluSx SINE Alu 1 288 -24 225 0 0 0 chr11 36365300 36365325 -112418147 + (CA)n Simple_repeat Simple_repeat 2 26 0 208 218 18 18 chr11 36365403 36365458 -112418014 - MIR SINE MIR -12 250 196 225 132 0 0 chr11 36365739 36365777 -112417695 + (TC)n Simple_repeat Simple_repeat 2 39 0 278 298 91 8 chr11 36365947 36366068 -112417404 - MIR SINE MIR -98 164 34 192 40 0 0 chr11 36366433 36366458 -112417014 + (CAAAAA)n Simple_repeat Simple_repeat 4 28 0 890 168 0 0 chr11 36366475 36366606 -112416866 - AluSq/x SINE Alu -180 133 3 2001 148 0 0 chr11 36367372 36367669 -112415803 - AluJb SINE Alu -15 297 1 236 283 141 0 chr11 36367704 36367796 -112415676 + MIR SINE MIR 156 260 -2 374 295 38 19 chr11 36368430 36368535 -112414937 + MIR SINE MIR 50 156 -106 880 98 8 15 chr11 36368557 36368689 -112414783 + AluSq/x SINE Alu 1 131 -182 774 166 63 91 chr11 36369084 36369259 -112414213 - AluJo SINE Alu -20 292 123 218 56 56 19 chr11 36369274 36369328 -112414144 + (TTA)n Simple_repeat Simple_repeat 1 56 0 37 69 0 0 chr11 36369345 36369417 -112414055 + AT_rich Low_complexity Low_complexity 1 72 0 240 35 0 0 chr11 36369601 36369630 -112413842 + (CCCCCT)n Simple_repeat Simple_repeat 2 30 0 9993 45 1 77 chr11 36369630 36371068 -112412404 + SVA Other Other 57 1386 0 2001 143 0 0 chr11 36371416 36371723 -112411749 + AluSx SINE Alu 1 307 -5 1556 145 0 93 chr11 36372418 36372750 -112410722 - AluJb SINE Alu -11 301 1 417 219 84 17 chr11 36372750 36372861 -112410611 - MIR SINE MIR -52 210 89 1746 149 68 54 chr11 36373076 36373446 -112410026 - THE1C LTR MaLR 0 375 1 239 150 0 0 chr11 36373663 36373703 -112409769 + MER45 DNA AcHobo 1 40 -1541 417 267 48 0 chr11 36373706 36373811 -112409661 - MER5A DNA MER1_type -71 118 9 7207 128 128 104 chr11 36373963 36375621 -112407851 + pTR5 LTR ERV1 741 2438 0 348 196 167 20 chr11 36375630 36375732 -112407740 + MIR SINE MIR 96 212 -50 1865 138 27 7 chr11 36375937 36376235 -112407237 - AluSx SINE Alu -8 304 1 2101 161 5 72 chr11 36376316 36376479 -112406993 - MLT1B LTR MaLR -3 387 215 1394 211 35 54 chr11 36376479 36376814 -112406658 - MLT1A1 LTR MaLR -2 363 34 1713 166 0 3 chr11 36376814 36377128 -112406344 + AluJo SINE Alu 1 312 0 1394 211 35 54 chr11 36377128 36377162 -112406310 - MLT1A1 LTR MaLR -331 34 1 2101 161 5 72 chr11 36377162 36377226 -112406246 - MLT1B LTR MaLR -175 215 148 1962 126 33 0 chr11 36377226 36377528 -112405944 - AluSx SINE Alu 0 312 1 2101 161 5 72 chr11 36377528 36377714 -112405758 - MLT1B LTR MaLR -242 148 1 2582 23 7 3 chr11 36377801 36378110 -112405362 - AluY SINE Alu -1 310 1 425 296 53 0 chr11 36378224 36378356 -112405116 + MIR SINE MIR 65 203 -59 1766 162 0 3 chr11 36378422 36378719 -112404753 - AluJb SINE Alu -16 296 1 1937 121 50 0 chr11 36378742 36379039 -112404433 - AluSx SINE Alu 0 312 1 971 129 18 47 chr11 36379071 36379241 -112404231 + LTR47A LTR ERVL 1 165 -287 1131 132 30 0 chr11 36379461 36379658 -112403814 - L1MA4A LINE L1 -1 6302 6100 1676 141 72 34 chr11 36379663 36379843 -112403629 + LTR47A LTR ERVL 151 348 -104 2231 107 0 0 chr11 36379843 36380152 -112403320 - AluSx SINE Alu -3 309 1 1676 141 72 34 chr11 36380152 36380262 -112403210 + LTR47A LTR ERVL 348 452 0 182 358 0 0 chr11 36381598 36381665 -112401807 + L2 LINE L2 2992 3058 -214 201 254 0 90 chr11 36381790 36381857 -112401615 + L2 LINE L2 3189 3249 -23 2091 105 0 7 chr11 36382184 36382499 -112400973 + AluSx SINE Alu 1 313 0 556 260 73 29 chr11 36382730 36382934 -112400538 + MIR SINE MIR 18 230 -32 2233 92 3 0 chr11 36382973 36383279 -112400193 - AluSx SINE Alu -5 307 1 568 239 107 49 chr11 36384103 36384234 -112399238 + L1M4 LINE L1 2846 2968 -3178 1851 112 48 0 chr11 36384234 36384536 -112398936 - AluSc SINE Alu 0 315 1 568 239 107 49 chr11 36384536 36384834 -112398638 + L1M4 LINE L1 2968 3301 -2845 2151 125 0 0 chr11 36384835 36385146 -112398326 + AluSx SINE Alu 1 311 -1 452 147 27 0 chr11 36385162 36385237 -112398235 + AluSx SINE Alu 7 83 -229 1476 111 0 5 chr11 36385275 36385508 -112397964 + AluSx SINE Alu 75 306 0 375 318 64 23 chr11 36385661 36385834 -112397638 + MIR SINE MIR 15 194 -68 1781 144 33 13 chr11 36385883 36386189 -112397283 + AluSx SINE Alu 1 312 0 703 180 0 8 chr11 36386194 36386322 -112397150 + FLAM_A SINE Alu 1 127 -6 451 140 184 19 chr11 36386789 36386903 -112396569 + L1MB5 LINE L1 6044 6183 0 1867 120 87 39 chr11 36387074 36387432 -112396040 + THE1C LTR MaLR 1 375 0 1226 166 0 35 chr11 36387757 36387986 -112395486 + AluJb SINE Alu 85 305 -7 830 153 0 0 chr11 36388002 36388120 -112395352 + FLAM_C SINE Alu 7 124 -19 861 288 24 4 chr11 36388303 36388553 -112394919 - MIR SINE MIR -6 256 2 494 196 10 0 chr11 36388593 36388690 -112394782 - MLT1K LTR MaLR -162 426 329 504 274 193 46 chr11 36388802 36389233 -112394239 + MLT1H1 LTR MaLR 32 525 -30 245 369 121 19 chr11 36389434 36389591 -112393881 + MIR SINE MIR 20 192 -70 2125 126 0 0 chr11 36390094 36390404 -112393068 - AluSx SINE Alu -2 310 1 725 241 122 30 chr11 36390656 36390893 -112392579 + MIR SINE MIR 2 260 -2 2218 97 0 7 chr11 36391538 36391846 -112391626 - AluSg SINE Alu -4 306 1 1942 132 7 0 chr11 36391846 36392135 -112391337 - AluSx SINE Alu -21 291 1 488 281 9 0 chr11 36392405 36392519 -112390953 + MIR3 SINE MIR 82 196 -12 2234 101 0 3 chr11 36392526 36392832 -112390640 + AluSx SINE Alu 1 305 -7 1544 108 31 0 chr11 36392922 36393145 -112390327 + MER30 DNA MER1_type 1 230 0 2021 129 7 0 chr11 36393289 36393592 -112389880 + AluSg SINE Alu 1 305 -5 2140 111 7 0 chr11 36394218 36394524 -112388948 + AluY SINE Alu 1 308 -3 219 306 11 123 chr11 36394730 36394964 -112388508 + L2 LINE L2 2807 2991 -281 2286 81 0 3 chr11 36394964 36395262 -112388210 + AluSp SINE Alu 2 298 -15 219 306 11 123 chr11 36395262 36395377 -112388095 + L2 LINE L2 2991 3117 -155 2301 216 61 80 chr11 36395420 36395538 -112387934 - L1ME3A LINE L1 -8 6162 6043 1614 142 0 122 chr11 36395538 36395702 -112387770 + AluJb SINE Alu 1 105 -197 2119 84 14 3 chr11 36395702 36396012 -112387460 + AluSq SINE Alu 1 313 0 1614 142 0 122 chr11 36396012 36396189 -112387283 + AluJb SINE Alu 105 302 0 2301 216 61 80 chr11 36396189 36396669 -112386803 - L1ME3A LINE L1 -127 6043 5555 1969 119 7 3 chr11 36396669 36396964 -112386508 - AluSx SINE Alu -16 296 1 2301 216 61 80 chr11 36396964 36397046 -112386426 - L1ME3A LINE L1 -615 5555 5473 200 83 0 28 chr11 36397046 36397082 -112386390 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1760 157 0 0 chr11 36397085 36397365 -112386107 - AluJb SINE Alu -32 280 1 2301 216 61 80 chr11 36397365 36397420 -112386052 - L1ME3A LINE L1 -699 5471 5435 606 192 54 134 chr11 36397917 36397998 -112385474 + L1M4 LINE L1 5419 5505 -679 2002 114 0 0 chr11 36397998 36398314 -112385158 + AluSx SINE Alu 1 316 0 606 192 54 134 chr11 36398314 36398429 -112385043 + L1M4 LINE L1 5505 5568 -616 2015 120 7 10 chr11 36398429 36398737 -112384735 + AluSg SINE Alu 1 307 -3 606 192 54 134 chr11 36398737 36398775 -112384697 + L1M4 LINE L1 5568 5607 -577 357 340 12 92 chr11 36398943 36399165 -112384307 + L2 LINE L2 2807 2994 -278 2341 77 0 0 chr11 36399165 36399462 -112384010 + AluSp SINE Alu 2 298 -15 357 340 12 92 chr11 36399462 36399577 -112383895 + L2 LINE L2 2994 3117 -155 2011 125 0 10 chr11 36399866 36400171 -112383301 + AluSg SINE Alu 1 302 -8 2841 163 28 26 chr11 36400173 36400271 -112383201 + L1MB7 LINE L1 5599 5695 -489 1941 111 180 45 chr11 36400271 36400312 -112383160 - MSTA LTR MaLR 0 428 394 2091 99 3 14 chr11 36400312 36400606 -112382866 + AluSc SINE Alu 1 291 -18 1941 111 180 45 chr11 36400606 36400941 -112382531 - MSTA LTR MaLR -34 394 1 2841 163 28 26 chr11 36400941 36401419 -112382053 + L1MB7 LINE L1 5695 6176 -8 28 29 0 0 chr11 36401517 36401552 -112381920 + AT_rich Low_complexity Low_complexity 1 35 0 2195 108 0 0 chr11 36401889 36402194 -112381278 - AluSq SINE Alu -8 305 1 1825 127 48 0 chr11 36402253 36402545 -112380927 - AluSq SINE Alu -7 306 1 387 257 50 29 chr11 36402599 36402739 -112380733 + MER5A DNA MER1_type 21 163 -26 289 320 90 28 chr11 36403124 36403302 -112380170 - MER5A DNA MER1_type 0 189 1 228 35 0 0 chr11 36403903 36403932 -112379540 + (TTCC)n Simple_repeat Simple_repeat 4 32 0 186 171 0 0 chr11 36403959 36404000 -112379472 + CT-rich Low_complexity Low_complexity 1 41 0 2195 100 0 10 chr11 36404037 36404337 -112379135 - AluSx SINE Alu -10 302 6 2260 100 0 0 chr11 36404431 36404731 -112378741 - AluSx SINE Alu -12 300 1 815 169 59 131 chr11 36404763 36404999 -112378473 - MER20 DNA MER1_type 0 219 1 1699 173 3 10 chr11 36406030 36406336 -112377136 + AluJo SINE Alu 1 304 -8 1710 136 0 0 chr11 36407087 36407345 -112376127 - AluSg SINE Alu -15 295 38 180 0 0 0 chr11 36407696 36407716 -112375756 + (T)n Simple_repeat Simple_repeat 1 20 0 2104 118 3 3 chr11 36407729 36408034 -112375438 + AluSx SINE Alu 1 305 -7 772 225 13 0 chr11 36408168 36408319 -112375153 - FRAM SINE Alu -23 153 1 195 262 136 78 chr11 36408503 36408606 -112374866 + L3 LINE CR1 1229 1337 -240 2185 114 0 3 chr11 36409016 36409323 -112374149 - AluSq SINE Alu -7 306 1 388 245 149 60 chr11 36409355 36409503 -112373969 - L3 LINE CR1 -69 1508 1374 2086 110 3 3 chr11 36409503 36409803 -112373669 + AluSx SINE Alu 1 300 -12 388 245 149 60 chr11 36409803 36409903 -112373569 - L3 LINE CR1 -203 1374 1238 2543 49 0 0 chr11 36410159 36410464 -112373008 + AluY SINE Alu 1 305 -6 22 80 0 0 chr11 36410789 36410839 -112372633 + AT_rich Low_complexity Low_complexity 1 50 0 205 321 37 0 chr11 36411174 36411255 -112372217 + MIR SINE MIR 90 173 -89 1520 108 124 12 chr11 36411624 36411883 -112371589 - AluSg1 SINE Alu -21 288 1 2363 62 0 10 chr11 36412770 36413077 -112370395 - AluY SINE Alu -7 304 1 1041 162 0 46 chr11 36413190 36413387 -112370085 - MER5A DNA MER1_type -1 188 1 1275 155 61 84 chr11 36413808 36414105 -112369367 - AluJb SINE Alu -12 290 1 2031 104 0 7 chr11 36414126 36414447 -112369025 - AluSg SINE Alu 0 310 1 1732 108 64 47 chr11 36414450 36414746 -112368726 - AluSg SINE Alu -8 302 2 1922 149 7 0 chr11 36414747 36415043 -112368429 - AluSx SINE Alu -12 300 3 1266 191 42 32 chr11 36415305 36415614 -112367858 - AluJo SINE Alu 0 312 1 1139 256 158 75 chr11 36415752 36416298 -112367174 - MLT1G LTR MaLR 0 590 5 2110 105 7 0 chr11 36416967 36417263 -112366209 - AluSg SINE Alu -12 298 1 24 0 0 0 chr11 36417307 36417331 -112366141 + AT_rich Low_complexity Low_complexity 1 24 0 216 67 0 0 chr11 36417723 36417753 -112365719 + (A)n Simple_repeat Simple_repeat 1 30 0 1665 176 7 4 chr11 36418239 36418511 -112364961 - AluSx SINE Alu -39 273 1 2294 102 3 0 chr11 36418524 36418817 -112364655 - AluSp SINE Alu -19 294 1 2083 128 7 0 chr11 36418817 36419106 -112364366 - AluSx SINE Alu -21 291 1 443 281 9 0 chr11 36419376 36419490 -112363982 + MIR3 SINE MIR 82 196 -12 2361 101 0 3 chr11 36419497 36419803 -112363669 + AluSx SINE Alu 1 305 -7 1555 104 36 0 chr11 36419893 36420115 -112363357 + MER30 DNA MER1_type 1 230 0 2370 92 7 0 chr11 36420259 36420565 -112362907 + AluSg SINE Alu 1 308 -2 756 145 140 55 chr11 36420634 36420834 -112362638 + L1ME1 LINE L1 5800 6016 -150 637 235 7 7 chr11 36420834 36420987 -112362485 + L1MA10 LINE L1 6175 6327 -7 2086 140 6 16 chr11 36421062 36421377 -112362095 + AluJo SINE Alu 1 312 0 187 203 31 0 chr11 36421439 36421503 -112361969 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 2428 94 19 0 chr11 36421884 36422191 -112361281 - AluSq SINE Alu 0 313 1 2262 78 0 39 chr11 36422204 36422510 -112360962 - AluY SINE Alu -17 294 1 2022 151 20 0 chr11 36422996 36423301 -112360171 - AluSx SINE Alu -1 311 1 628 300 99 73 chr11 36423633 36424170 -112359302 + MLT1K LTR MaLR 35 585 -3 445 321 47 31 chr11 36424511 36424573 -112358899 - MIR SINE MIR -17 245 185 351 0 0 0 chr11 36424573 36424612 -112358860 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 2223 92 3 7 chr11 36424614 36424897 -112358575 - AluSp SINE Alu -31 282 1 445 321 47 31 chr11 36424897 36425024 -112358448 - MIR SINE MIR -77 185 50 195 266 127 0 chr11 36425671 36425750 -112357722 - MIR SINE MIR -18 244 156 1984 149 0 0 chr11 36425788 36426083 -112357389 + AluJb SINE Alu 2 296 -16 2446 100 0 0 chr11 36426330 36426640 -112356832 - AluSg SINE Alu 0 310 1 481 297 39 0 chr11 36426758 36426886 -112356586 - L2 LINE L2 -3 3269 3137 2339 88 7 3 chr11 36427006 36427311 -112356161 + AluSp SINE Alu 1 306 -7 1383 236 183 60 chr11 36427585 36427658 -112355814 - LTR41 LTR ERVL -1 772 709 2103 110 7 35 chr11 36427658 36427968 -112355504 + AluSx SINE Alu 1 301 -11 1508 105 5 0 chr11 36427968 36428158 -112355314 + AluSx SINE Alu 1 192 -120 1383 236 183 60 chr11 36428158 36428614 -112354858 - LTR41 LTR ERVL -64 709 135 1833 47 177 12 chr11 36428614 36428868 -112354604 + AluY SINE Alu 1 296 -15 1383 236 183 60 chr11 36428868 36429023 -112354449 - LTR41 LTR ERVL -638 135 1 28 0 0 0 chr11 36429142 36429170 -112354302 + AT_rich Low_complexity Low_complexity 1 28 0 517 275 140 0 chr11 36429382 36429560 -112353912 + MIR SINE MIR 20 222 -40 308 272 112 8 chr11 36430101 36430226 -112353246 - MIR3 SINE MIR -21 187 50 2265 82 7 0 chr11 36430257 36430539 -112352933 + AluSg SINE Alu 1 284 -26 394 128 17 211 chr11 36431094 36431248 -112352224 + L1MD1 LINE L1 6117 6226 -16 2365 96 0 13 chr11 36431370 36431683 -112351789 + AluSq SINE Alu 1 309 -4 2356 105 0 3 chr11 36432477 36432782 -112350690 - AluSq SINE Alu -9 304 1 23 33 0 0 chr11 36432878 36432908 -112350564 + AT_rich Low_complexity Low_complexity 1 30 0 762 213 118 147 chr11 36433100 36433581 -112349891 + MLT1H1 LTR MaLR 3 480 -75 1395 94 0 0 chr11 36433581 36433751 -112349721 - AluSg/x SINE Alu -16 296 127 537 113 12 12 chr11 36433782 36433862 -112349610 + AluSg SINE Alu 4 83 -227 337 300 0 0 chr11 36434019 36434109 -112349363 + L1MC4 LINE L1 6615 6704 -1338 183 162 0 0 chr11 36434109 36434146 -112349326 + (TA)n Simple_repeat Simple_repeat 2 38 0 3628 210 31 37 chr11 36434147 36434985 -112348487 - MER21B LTR ERV1 -11 852 20 457 210 40 10 chr11 36434987 36435087 -112348385 - MER21B LTR ERV1 -760 103 1 314 108 5 0 chr11 36435087 36435140 -112348332 - MER63 DNA MER1_type -393 43 8 234 62 0 0 chr11 36435295 36435327 -112348145 + (A)n Simple_repeat Simple_repeat 1 32 0 203 237 0 0 chr11 36435824 36435862 -112347610 + polypurine Low_complexity Low_complexity 3 40 0 2488 87 0 0 chr11 36435896 36436206 -112347266 + AluSg SINE Alu 1 310 0 330 280 80 27 chr11 36436539 36436632 -112346840 + MIR SINE MIR 105 210 -52 1953 147 13 13 chr11 36436632 36436944 -112346528 + AluJb SINE Alu 1 312 0 330 280 80 27 chr11 36436944 36437000 -112346472 + MIR SINE MIR 210 262 0 2008 145 7 3 chr11 36437691 36438001 -112345471 - AluSx SINE Alu -1 311 1 2301 90 76 69 chr11 36438002 36438244 -112345228 + Tigger3(Golem) DNA MER2_type 2328 2576 -452 854 173 0 0 chr11 36438244 36438377 -112345095 - FLAM_C SINE Alu 0 133 1 2301 90 76 69 chr11 36438377 36438557 -112344915 + Tigger3(Golem) DNA MER2_type 2576 2753 -275 238 173 0 0 chr11 36438553 36438605 -112344867 - AluSq SINE Alu 0 303 252 * 1418 75 0 48 chr11 36438616 36438804 -112344668 - AluSq SINE Alu -134 179 1 306 170 0 0 chr11 36438804 36438857 -112344615 + AluSc SINE Alu 187 239 -60 1990 133 0 0 chr11 36438863 36439149 -112344323 + Tigger3(Golem) DNA MER2_type 2743 3028 -1 499 244 134 0 chr11 36439270 36439397 -112344075 - MIR SINE MIR -72 190 47 322 273 0 0 chr11 36440107 36440184 -112343288 + L2 LINE L2 3231 3307 -6 2013 160 0 0 chr11 36440645 36440945 -112342527 - AluJb SINE Alu -10 302 3 626 255 28 75 chr11 36441596 36441878 -112341594 + MER102b DNA MER1_type 73 341 0 2132 138 3 0 chr11 36442680 36442977 -112340495 - AluSx SINE Alu -14 298 1 374 269 41 28 chr11 36443173 36443318 -112340154 + MIR SINE MIR 104 250 -12 1698 131 113 7 chr11 36443351 36443633 -112339839 + AluJb SINE Alu 1 312 0 2630 130 22 49 chr11 36444023 36444178 -112339294 - L1MA2 LINE L1 0 6304 6146 198 0 0 0 chr11 36444178 36444200 -112339272 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 2076 107 7 7 chr11 36444200 36444481 -112338991 - AluSx SINE Alu -31 281 1 2630 130 22 49 chr11 36444481 36444837 -112338635 - L1MA2 LINE L1 -157 6147 5805 2187 102 10 3 chr11 36444837 36445130 -112338342 - AluSx SINE Alu -17 295 1 2630 130 22 49 chr11 36445130 36445163 -112338309 - L1MA2 LINE L1 -499 5805 5773 807 285 17 7 chr11 36445589 36445887 -112337585 + AluSq SINE Alu 3 303 -10 1254 278 14 33 chr11 36445896 36446263 -112337209 - MLT1I LTR MaLR -49 360 1 3668 194 42 35 chr11 36446348 36447128 -112336344 - MER63C DNA MER1_type -130 930 142 2228 120 0 3 chr11 36447128 36447437 -112336035 + AluSx SINE Alu 5 312 0 3668 194 42 35 chr11 36447437 36447532 -112335940 - MER63C DNA MER1_type -918 142 49 324 200 0 0 chr11 36447534 36447609 -112335863 + (TA)n Simple_repeat Simple_repeat 1 75 0 255 284 23 0 chr11 36447610 36447698 -112335774 - L1MC4 LINE L1 -1339 6703 6614 242 292 0 0 chr11 36447704 36447793 -112335679 - L1MC4 LINE L1 -1339 6703 6615 225 211 0 63 chr11 36447777 36447872 -112335600 - L1MC4 LINE L1 -1340 6702 6614 * 233 289 22 0 chr11 36447857 36447947 -112335525 + L1MC4 LINE L1 6615 6706 -1336 189 262 0 0 chr11 36447947 36448008 -112335464 + (TA)n Simple_repeat Simple_repeat 2 62 0 245 286 60 24 chr11 36448363 36448447 -112335025 + MIR SINE MIR 105 191 -71 835 144 0 0 chr11 36448456 36448574 -112334898 + FLAM_C SINE Alu 1 118 -25 942 202 33 0 chr11 36449796 36449979 -112333493 + MER5A DNA MER1_type 1 189 0 337 307 51 89 chr11 36449992 36450193 -112333279 + L2 LINE L2 189 371 -2943 1729 177 0 11 chr11 36450193 36450475 -112332997 - AluJo SINE Alu -31 281 3 337 307 51 89 chr11 36450475 36450644 -112332828 + L2 LINE L2 371 545 -2769 1553 95 5 5 chr11 36450646 36450856 -112332616 + MLT2B1 LTR ERVL 2 211 -309 843 147 0 31 chr11 36450857 36450986 -112332486 + FLAM_C SINE Alu 2 126 -17 639 171 8 73 chr11 36450991 36451018 -112332454 + MLT2B1 LTR ERVL 199 226 -289 249 33 0 0 chr11 36451018 36451048 -112332424 + (TC)n Simple_repeat Simple_repeat 2 31 0 2229 107 3 0 chr11 36451048 36451338 -112332134 - AluSp SINE Alu -22 291 1 639 171 8 73 chr11 36451338 36451432 -112332040 + MLT2B1 LTR ERVL 224 313 -202 448 297 33 6 chr11 36451462 36451644 -112331828 - L2 LINE L2 -557 2757 2571 2196 120 3 0 chr11 36451651 36451952 -112331520 - AluSx SINE Alu -10 302 1 352 215 51 13 chr11 36451992 36452071 -112331401 + MER5A DNA MER1_type 8 89 -100 374 286 104 11 chr11 36452359 36452541 -112330931 + L2 LINE L2 1721 1919 -1395 1200 290 114 40 chr11 36452847 36453223 -112330249 + L2 LINE L2 1930 2276 -1038 2045 108 0 14 chr11 36453223 36453542 -112329930 + AluSq SINE Alu 1 315 0 1200 290 114 40 chr11 36453542 36453899 -112329573 + L2 LINE L2 2276 2719 -595 450 0 0 0 chr11 36454280 36454330 -112329142 + (TA)n Simple_repeat Simple_repeat 2 51 0 2267 97 0 10 chr11 36454668 36454957 -112328515 - AluSx SINE Alu -16 296 11 1102 136 0 0 chr11 36455047 36455201 -112328271 - AluSg/x SINE Alu -12 300 147 625 287 84 35 chr11 36456445 36456731 -112326741 + MLT1I LTR MaLR 19 318 -91 1862 137 42 7 chr11 36456740 36457025 -112326447 - AluSx SINE Alu -17 295 1 526 208 54 71 chr11 36457042 36457210 -112326262 - MER58B DNA MER1_type 0 341 177 235 270 0 16 chr11 36457237 36457300 -112326172 - MER5A DNA MER1_type 0 189 128 754 235 290 5 chr11 36457480 36457921 -112325551 + L2 LINE L2 2748 3309 -4 33 90 0 0 chr11 36459445 36459534 -112323938 + GC_rich Low_complexity Low_complexity 1 89 0 26 30 0 0 chr11 36459774 36459807 -112323665 + GC_rich Low_complexity Low_complexity 1 33 0 2242 98 3 0 chr11 36461705 36462000 -112321472 - AluSp SINE Alu -17 296 1 858 167 6 56 chr11 36462424 36462604 -112320868 - AluSg/x SINE Alu -5 307 137 2047 111 14 17 chr11 36462606 36462903 -112320569 - AluSq SINE Alu -17 296 1 2111 116 10 13 chr11 36464985 36465296 -112318176 - AluSq SINE Alu -3 310 1 2390 86 0 3 chr11 36465422 36465713 -112317759 - AluSx SINE Alu -22 290 1 1989 100 0 4 chr11 36466547 36466807 -112316665 - AluSg SINE Alu -14 296 38 189 0 0 0 chr11 36467156 36467177 -112316295 + (T)n Simple_repeat Simple_repeat 1 21 0 2217 110 7 3 chr11 36467190 36467489 -112315983 + AluSx SINE Alu 1 300 -12 299 218 154 13 chr11 36467814 36467892 -112315580 - Tigger3(Golem) DNA MER2_type -2940 89 1 2170 133 0 0 chr11 36467950 36468252 -112315220 - AluSx SINE Alu -10 302 1 2343 72 27 0 chr11 36468949 36469241 -112314231 - AluSq SINE Alu -13 300 1 257 106 43 64 chr11 36469242 36469289 -112314183 + MLT1I LTR MaLR 363 408 -1 21 57 0 0 chr11 36469733 36469768 -112313704 + AT_rich Low_complexity Low_complexity 1 35 0 1907 168 28 3 chr11 36469856 36470174 -112313298 + AluJb SINE Alu 1 293 -19 317 207 0 0 chr11 36470373 36470431 -112313041 - MLT1H1 LTR MaLR -2 553 496 306 270 0 0 chr11 36470433 36470528 -112312944 - AluSg/x SINE Alu 0 304 210 358 114 0 127 chr11 36522698 36522777 -112260695 + Alu SINE Alu 234 302 0 731 180 0 43 chr11 36522955 36523094 -112260378 + FLAM_C SINE Alu 1 133 0 22 35 0 0 chr11 36523290 36523319 -112260153 + AT_rich Low_complexity Low_complexity 1 29 0 275 189 200 0 chr11 36524562 36524657 -112258815 + L1 LINE L1 2918 3031 -3115 2159 138 0 0 chr11 36524752 36525057 -112258415 - AluSx SINE Alu -7 305 1 1952 144 0 10 chr11 36525829 36526128 -112257344 - AluSx SINE Alu -14 298 3 1385 183 7 60 chr11 36526338 36526639 -112256833 - AluJo SINE Alu -27 285 1 583 174 39 65 chr11 36526657 36526812 -112256660 - FRAM SINE Alu -6 170 20 899 112 83 65 chr11 36527159 36527328 -112256144 - AluSx SINE Alu -67 243 72 204 317 20 30 chr11 36527330 36527431 -112256041 + L2 LINE L2 2902 3001 -312 330 176 0 71 chr11 36527455 36527540 -112255932 - L1MA8 LINE L1 -1 6290 6212 355 234 0 0 chr11 36527541 36527618 -112255854 + FRAM/FAM SINE Alu 3 79 -87 446 89 0 156 chr11 36527656 36527746 -112255726 - AluSc SINE Alu -61 248 173 529 84 0 0 chr11 36527751 36527822 -112255650 - AluSx SINE Alu -241 72 2 1509 153 57 43 chr11 36527996 36528278 -112255194 + AluJo SINE Alu 1 286 -26 1720 169 26 13 chr11 36528335 36528528 -112254944 - AluJb SINE Alu 0 312 112 189 0 0 0 chr11 36528528 36528549 -112254923 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1720 169 26 13 chr11 36528549 36528663 -112254809 - AluJb SINE Alu -200 112 1 741 94 24 39 chr11 36532404 36532531 -112250941 + L2 LINE L2 3189 3313 0 25 0 0 0 chr11 36534589 36534614 -112248858 + AT_rich Low_complexity Low_complexity 1 25 0 188 425 0 0 chr11 36536469 36536542 -112246930 - L2 LINE L2 -40 3232 3160 2470 91 3 0 chr11 36536924 36537233 -112246239 + AluSg SINE Alu 1 310 0 510 283 266 29 chr11 36537433 36538202 -112245270 + L2 LINE L2 2050 3074 -239 1832 109 94 7 chr11 36540499 36540775 -112242697 - AluSx SINE Alu -11 301 2 331 134 171 37 chr11 36540925 36541007 -112242465 - L1ME4a LINE L1 -63 6058 5966 1105 103 0 2 chr11 36541115 36541351 -112242121 + AluSc SINE Alu 2 288 -21 379 286 45 32 chr11 36542044 36542198 -112241274 + MIR3 SINE MIR 46 201 -7 285 98 0 0 chr11 36544012 36544053 -112239419 + (T)n Simple_repeat Simple_repeat 1 41 0 23 0 0 0 chr11 36544187 36544210 -112239262 + AT_rich Low_complexity Low_complexity 1 23 0 184 325 12 0 chr11 36544740 36544820 -112238652 - MIR3 SINE MIR -24 184 104 201 74 0 0 chr11 36546254 36546281 -112237191 + (TG)n Simple_repeat Simple_repeat 2 28 0 702 123 51 51 chr11 36546990 36547128 -112236344 + FLAM_C SINE Alu 2 139 -4 951 272 81 44 chr11 36547989 36548338 -112235134 + L2 LINE L2 2841 3213 -100 2232 98 0 11 chr11 36548338 36548648 -112234824 + AluSx SINE Alu 1 307 0 951 272 81 44 chr11 36548648 36548753 -112234719 + L2 LINE L2 3213 3313 0 335 255 270 19 chr11 36548793 36549056 -112234416 + L2 LINE L2 2985 3313 0 201 280 110 10 chr11 36549537 36549637 -112233835 + MIR SINE MIR 36 145 -63 2153 115 3 13 chr11 36549874 36550052 -112233420 - AluSx SINE Alu 0 312 137 2145 142 0 0 chr11 36550052 36550362 -112233110 - AluSx SINE Alu -2 310 1 2153 115 3 13 chr11 36550362 36550495 -112232977 - AluSx SINE Alu -175 137 4 368 230 148 22 chr11 36550540 36550675 -112232797 - MER103 DNA DNA -7 159 8 1005 178 23 32 chr11 36550753 36550972 -112232500 + MER20 DNA MER1_type 1 217 -2 831 216 0 13 chr11 36552222 36552375 -112231097 - FRAM SINE Alu -24 152 2 269 303 117 14 chr11 36553236 36553381 -112230091 - L1MC/D LINE L1 -2047 5761 5602 407 255 64 71 chr11 36553391 36553579 -112229893 - L1MC/D LINE L1 -2248 5560 5373 218 32 32 0 chr11 36553579 36553610 -112229862 + (TTG)n Simple_repeat Simple_repeat 1 32 0 407 255 64 71 chr11 36553610 36553688 -112229784 - L1MC/D LINE L1 -2435 5373 5296 1133 237 106 75 chr11 36554098 36555048 -112228424 - L2 LINE L2 -42 3271 2352 2552 82 0 0 chr11 36555048 36555352 -112228120 + AluSc SINE Alu 1 304 -5 1133 237 106 75 chr11 36555352 36555363 -112228109 - L2 LINE L2 -961 2352 2343 2373 101 0 0 chr11 36555363 36555661 -112227811 + AluSq SINE Alu 1 298 -15 1133 237 106 75 chr11 36555661 36555775 -112227697 - L2 LINE L2 -970 2343 2170 443 261 15 31 chr11 36556642 36556772 -112226700 - MIR SINE MIR -65 143 16 2347 63 28 0 chr11 36557357 36557643 -112225829 + AluSp SINE Alu 1 294 -19 2075 110 0 56 chr11 36559150 36559469 -112224003 + AluSx SINE Alu 1 301 -11 526 278 91 27 chr11 36559958 36560277 -112223195 - L1ME LINE L1 -513 5649 5311 489 245 80 13 chr11 36560578 36560788 -112222684 - MIR SINE MIR -28 234 10 32 43 0 0 chr11 36561445 36561491 -112221981 + AT_rich Low_complexity Low_complexity 1 46 0 2393 94 7 0 chr11 36561542 36561850 -112221622 + AluSg SINE Alu 1 310 0 300 282 27 40 chr11 36562133 36562148 -112221324 - L1MA10 LINE L1 -2 6332 6318 2839 199 48 28 chr11 36562148 36563065 -112220407 - L1MB8 LINE L1 -9 6155 5197 2354 109 0 3 chr11 36563065 36563376 -112220096 - AluSx SINE Alu -2 310 1 2839 199 48 28 chr11 36563376 36563427 -112220045 - L1MB8 LINE L1 -967 5197 5148 244 264 182 6 chr11 36563953 36564112 -112219360 - MIR SINE MIR -74 188 2 2454 91 3 0 chr11 36565142 36565451 -112218021 - AluSg SINE Alu 0 310 1 417 248 41 0 chr11 36567071 36567192 -112216280 - L1ME LINE L1 -345 5817 5692 2311 64 0 40 chr11 36567338 36567635 -112215837 + AluY SINE Alu 1 285 -26 929 207 12 0 chr11 36568903 36569072 -112214400 + MER5A DNA MER1_type 19 189 0 1502 133 0 0 chr11 36569237 36569447 -112214025 + AluJb SINE Alu 90 299 -13 2255 121 0 0 chr11 36569553 36569850 -112213622 - AluSx SINE Alu -15 297 1 964 227 145 93 chr11 36570744 36571872 -112211600 - L2 LINE L2 -801 2513 1327 216 236 0 18 chr11 36573416 36573471 -112210001 + (TA)n Simple_repeat Simple_repeat 1 54 0 256 319 92 18 chr11 36574079 36574242 -112209230 - MIR SINE MIR -15 247 73 234 0 0 0 chr11 36574790 36574816 -112208656 + (CA)n Simple_repeat Simple_repeat 1 26 0 369 0 0 0 chr11 36574879 36574920 -112208552 + (CA)n Simple_repeat Simple_repeat 1 41 0 405 344 49 16 chr11 36577312 36577495 -112205977 - MIR SINE MIR -71 191 3 462 177 88 0 chr11 36577505 36577618 -112205854 - Charlie1b DNA MER1_type 0 523 401 933 105 7 28 chr11 36577621 36577764 -112205708 + FLAM_C SINE Alu 1 140 -3 1085 204 127 25 chr11 36577767 36578130 -112205342 - Charlie1b DNA MER1_type -119 404 5 309 281 99 16 chr11 36579306 36579427 -112204045 + L2 LINE L2 3134 3264 -8 21 0 0 0 chr11 36580985 36581006 -112202466 + AT_rich Low_complexity Low_complexity 1 21 0 214 291 101 13 chr11 36581067 36581146 -112202326 - MIR3 SINE MIR 0 208 123 612 261 113 20 chr11 36581208 36581403 -112202069 + MIR SINE MIR 28 240 -22 1466 176 35 18 chr11 36581501 36581785 -112201687 - AluJo SINE Alu -23 289 1 957 166 19 0 chr11 36583664 36583821 -112199651 - FRAM SINE Alu -21 155 1 291 361 48 36 chr11 36586241 36586407 -112197065 + L2 LINE L2 3096 3263 -9 362 316 110 47 chr11 36586695 36586859 -112196613 - L2 LINE L2 -456 2858 2706 1367 166 123 0 chr11 36586859 36587112 -112196360 - AluJb SINE Alu -28 284 1 362 316 110 47 chr11 36587112 36587412 -112196060 - L2 LINE L2 -608 2706 2365 251 273 50 30 chr11 36587442 36587541 -112195931 - MIR SINE MIR -150 112 12 264 291 32 16 chr11 36588487 36588590 -112194882 - MIR SINE MIR -68 140 79 2299 83 3 3 chr11 36589992 36590292 -112193180 - AluSp SINE Alu -13 300 1 429 144 115 22 chr11 36590301 36590440 -112193032 + Charlie5 DNA MER1_type 2455 2606 -6 290 302 47 0 chr11 36591221 36591350 -112192122 + L2 LINE L2 2550 2684 -630 735 236 70 15 chr11 36591376 36591575 -112191897 + MIR SINE MIR 47 256 -6 2344 68 10 0 chr11 36591601 36591896 -112191576 + AluY SINE Alu 1 298 -13 347 229 73 28 chr11 36592354 36592463 -112191009 - MER5A DNA MER1_type -70 119 6 236 272 5 43 chr11 36594089 36594273 -112189199 + (TGGG)n Simple_repeat Simple_repeat 4 180 0 * 288 267 17 28 chr11 36594137 36594317 -112189155 + (TG)n Simple_repeat Simple_repeat 2 179 0 353 298 117 29 chr11 36596542 36596713 -112186759 + MIR SINE MIR 64 249 -13 256 250 0 0 chr11 36597911 36597971 -112185501 + MIR SINE MIR 33 92 -116 351 297 75 16 chr11 36599171 36599342 -112184130 + MIR3 SINE MIR 1 177 -31 267 263 105 0 chr11 36599978 36600054 -112183418 - L2 LINE L2 -44 3228 3145 584 276 52 26 chr11 36601684 36601876 -112181596 + MIR SINE MIR 23 219 -43 376 205 86 51 chr11 36602022 36602139 -112181333 - MIR3 SINE MIR -45 163 43 464 260 197 45 chr11 36602836 36603059 -112180413 - MIR SINE MIR 0 262 6 968 227 61 12 chr11 36603562 36603809 -112179663 + MIR SINE MIR 1 259 -3 338 260 78 13 chr11 36603855 36604009 -112179463 + L2 LINE L2 3059 3222 -91 1946 124 4 0 chr11 36604769 36605043 -112178429 + AluSx SINE Alu 10 284 -28 189 0 0 0 chr11 36605055 36605076 -112178396 + (TAAG)n Simple_repeat Simple_repeat 1 21 0 2250 108 3 0 chr11 36605558 36605865 -112177607 + AluSx SINE Alu 1 308 -4 225 0 0 0 chr11 36605865 36605890 -112177582 + (TA)n Simple_repeat Simple_repeat 2 26 0 402 21 0 0 chr11 36605910 36605957 -112177515 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 639 315 43 21 chr11 36606051 36606286 -112177186 + MIR SINE MIR 18 257 -5 190 298 85 32 chr11 36607320 36607414 -112176058 + MIR SINE MIR 120 218 -44 2289 66 33 3 chr11 36607525 36607827 -112175645 + AluY SINE Alu 1 311 0 2070 129 70 0 chr11 36608719 36609060 -112174412 - MER47A DNA MER2_type -1 365 1 284 339 70 74 chr11 36609209 36609470 -112174002 + L2 LINE L2 2819 3079 -193 2268 116 0 0 chr11 36609470 36609780 -112173692 + AluSg SINE Alu 1 310 0 284 339 70 74 chr11 36609780 36609964 -112173508 + L2 LINE L2 3079 3262 -10 979 164 0 0 chr11 36609964 36610135 -112173337 + FRAM SINE Alu 1 170 -6 225 200 0 0 chr11 36610859 36610899 -112172573 + MLT1J LTR MaLR 95 134 -377 1175 150 10 5 chr11 36611143 36611336 -112172136 - AluJb SINE Alu -118 194 1 635 125 7 49 chr11 36612209 36612264 -112171208 - Charlie1 DNA MER1_type -1 2760 2704 2050 136 0 16 chr11 36612264 36612572 -112170900 + AluSx SINE Alu 1 303 -9 635 125 7 49 chr11 36612572 36612660 -112170812 - Charlie1 DNA MER1_type -57 2704 2623 * 1009 214 57 0 chr11 36612644 36612873 -112170599 - Charlie1 DNA MER1_type -2519 242 1 220 256 61 24 chr11 36613063 36613145 -112170327 + MIR SINE MIR 43 127 -81 740 298 57 16 chr11 36613247 36613495 -112169977 + MIR SINE MIR 5 262 0 360 225 78 39 chr11 36614113 36614242 -112169230 - MIR SINE MIR -58 150 17 2016 122 7 3 chr11 36614378 36614674 -112168798 - AluSc SINE Alu -12 297 1 246 32 0 0 chr11 36614709 36614740 -112168732 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 869 295 34 0 chr11 36616228 36616462 -112167010 - MIR SINE MIR -3 259 18 384 254 37 67 chr11 36616544 36616576 -112166896 + MER94 DNA DNA 5 36 -98 1806 159 3 3 chr11 36616576 36616872 -112166600 - AluJb SINE Alu -16 296 1 384 254 37 67 chr11 36616872 36616973 -112166499 + MER94 DNA DNA 36 134 0 285 310 135 15 chr11 36617040 36617240 -112166232 + L2 LINE L2 3041 3264 -49 233 29 29 0 chr11 36617371 36617405 -112166067 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 656 142 213 89 chr11 36617410 36617579 -112165893 - AluJb SINE Alu -36 276 87 438 273 87 12 chr11 36618928 36619089 -112164383 - MIR SINE MIR -13 249 77 1809 171 41 3 chr11 36619129 36619445 -112164027 + L1MA6 LINE L1 5971 6298 -2 305 300 66 2 chr11 36620476 36620608 -112162864 + MIR SINE MIR 46 183 -68 1720 152 35 3 chr11 36620956 36621246 -112162226 - AluJo SINE Alu 0 312 14 207 182 0 23 chr11 36621312 36621356 -112162116 + GA-rich Low_complexity Low_complexity 4 46 0 434 320 51 15 chr11 36621521 36621718 -112161754 - MIR SINE MIR -55 207 4 319 301 153 29 chr11 36621725 36621934 -112161538 - L2 LINE L2 -1 3312 3078 360 345 81 0 chr11 36622376 36622524 -112160948 - MIR SINE MIR -52 210 51 761 82 0 0 chr11 36622645 36622742 -112160730 + HY3 scRNA scRNA 2 98 -3 200 0 100 0 chr11 36622742 36622772 -112160700 + A-rich Low_complexity Low_complexity 2 34 0 1733 182 3 0 chr11 36622791 36623082 -112160390 + AluJb SINE Alu 2 293 -19 678 183 23 202 chr11 36623317 36623427 -112160045 - MIR SINE MIR -25 237 197 2091 125 0 4 chr11 36623427 36623708 -112159764 + AluSx SINE Alu 1 280 -32 678 183 23 202 chr11 36623708 36623854 -112159618 - MIR SINE MIR -65 197 27 284 236 0 16 chr11 36624102 36624229 -112159243 + (TAG)n Simple_repeat Simple_repeat 1 125 0 575 233 129 0 chr11 36624358 36624521 -112158951 - MIR SINE MIR -9 253 70 1028 147 13 0 chr11 36624603 36624753 -112158719 + FRAM SINE Alu 10 161 -15 1791 170 0 7 chr11 36625483 36625772 -112157700 + AluJb SINE Alu 4 290 -22 193 280 118 32 chr11 36625798 36625891 -112157581 - MIR SINE MIR -116 146 46 251 311 193 15 chr11 36626949 36627084 -112156388 + MIR SINE MIR 1 159 -103 247 233 67 17 chr11 36627162 36627222 -112156250 - MIR SINE MIR -92 170 108 551 269 54 0 chr11 36629119 36629286 -112154186 + MIR SINE MIR 74 249 -13 23 0 0 0 chr11 36629678 36629701 -112153771 + AT_rich Low_complexity Low_complexity 1 23 0 2437 74 0 3 chr11 36629761 36630057 -112153415 + AluY SINE Alu 1 295 -16 262 270 14 14 chr11 36630092 36630166 -112153306 - MER91A DNA MER1_type -122 74 1 181 30 91 0 chr11 36630728 36630761 -112152711 + (CAGT)n Simple_repeat Simple_repeat 3 38 0 319 306 149 0 chr11 36631508 36631629 -112151843 - MIR SINE MIR -7 255 117 2028 125 3 31 chr11 36631633 36631954 -112151518 + AluSx SINE Alu 1 312 0 312 253 48 0 chr11 36632529 36632612 -112150860 + L2 LINE L2 3186 3272 0 509 254 8 8 chr11 36632909 36633031 -112150441 - MER5B DNA MER1_type -54 124 3 539 259 58 0 chr11 36633200 36633339 -112150133 + MIR SINE MIR 100 246 -16 384 353 90 12 chr11 36634160 36634327 -112149145 - MIR SINE MIR -71 191 12 896 258 118 0 chr11 36634333 36634620 -112148852 + MER5C DNA MER1_type 4 324 0 1116 257 121 43 chr11 36635500 36636050 -112147422 - L2 LINE L2 -35 3278 2677 2052 132 7 0 chr11 36636050 36636354 -112147118 + AluSx SINE Alu 1 306 0 1116 257 121 43 chr11 36636354 36636473 -112146999 - L2 LINE L2 -636 2677 2569 444 251 174 18 chr11 36636676 36636843 -112146629 + MIR SINE MIR 60 252 -10 265 256 24 24 chr11 36637081 36637163 -112146309 + MIR SINE MIR 31 112 -96 573 217 77 72 chr11 36637655 36637876 -112145596 - MER102a DNA MER1_type -5 325 104 282 323 77 8 chr11 36638546 36638676 -112144796 - L2 LINE L2 0 3272 3134 839 234 39 22 chr11 36639270 36639501 -112143971 + MIR SINE MIR 28 262 0 485 273 100 68 chr11 36639502 36639569 -112143903 - MIR SINE MIR -26 236 173 1874 109 20 76 chr11 36639569 36639895 -112143577 + AluSq SINE Alu 1 309 0 485 273 100 68 chr11 36639895 36640046 -112143426 - MIR SINE MIR -89 173 10 584 216 153 35 chr11 36641051 36641250 -112142222 - MIR SINE MIR 0 262 42 181 325 97 0 chr11 36641542 36641656 -112141816 - L3b LINE CR1 -194 1389 1265 434 256 111 45 chr11 36642149 36642438 -112141034 + L2 LINE L2 2357 2664 -650 1984 128 21 7 chr11 36642555 36642843 -112140629 + AluSx SINE Alu 1 292 -20 565 126 0 37 chr11 36643038 36643173 -112140299 + (TGGGGG)n Simple_repeat Simple_repeat 3 132 0 266 217 0 29 chr11 36643597 36643666 -112139806 + G-rich Low_complexity Low_complexity 3 69 0 242 281 49 0 chr11 36643939 36644021 -112139451 + MIR3 SINE MIR 116 201 -7 24 0 0 0 chr11 36644687 36644711 -112138761 + AT_rich Low_complexity Low_complexity 1 24 0 1681 203 3 7 chr11 36644860 36645160 -112138312 - AluJb SINE Alu -13 299 1 2088 89 29 58 chr11 36645362 36645675 -112137797 + AluSx SINE Alu 1 304 -8 2269 118 0 0 chr11 36645810 36646107 -112137365 - AluSx SINE Alu -15 297 1 572 292 12 12 chr11 36646199 36646367 -112137105 - MIR SINE MIR -72 190 23 2325 86 0 10 chr11 36646946 36647249 -112136223 + AluSx SINE Alu 1 300 -12 369 0 0 0 chr11 36647890 36647931 -112135541 + (CA)n Simple_repeat Simple_repeat 2 42 0 995 190 0 0 chr11 36648287 36648461 -112135011 - AluJb SINE Alu -5 307 134 757 263 38 14 chr11 36649330 36649539 -112133933 + MIR SINE MIR 36 249 -13 494 295 66 94 chr11 36649758 36650046 -112133426 - L2 LINE L2 0 3272 2993 1233 93 23 56 chr11 36650046 36650222 -112133250 - L1MC1 LINE L1 -297 6036 5867 2398 107 0 3 chr11 36650222 36650532 -112132940 + AluSq SINE Alu 1 309 -4 1233 93 23 56 chr11 36650532 36650570 -112132902 - L1MC1 LINE L1 -466 5867 5829 2570 170 6 31 chr11 36650570 36651047 -112132425 + MER66B LTR ERV1 22 486 0 3180 163 13 42 chr11 36651049 36651210 -112132262 - L1MC1 LINE L1 -505 5828 5664 2222 128 0 0 chr11 36651210 36651514 -112131958 - AluSx SINE Alu -7 305 2 3180 163 13 42 chr11 36651514 36652321 -112131151 - L1MC1 LINE L1 -669 5664 4893 2433 85 13 0 chr11 36652321 36652626 -112130846 + AluSp SINE Alu 1 309 -4 3180 163 13 42 chr11 36652626 36652730 -112130742 - L1MC1 LINE L1 -1440 4893 4788 298 305 211 23 chr11 36652756 36652884 -112130588 - L2 LINE L2 0 3272 3121 1518 141 18 128 chr11 36652931 36653024 -112130448 + MER7A DNA MER2_type 2 104 -2934 1796 180 33 0 chr11 36653024 36653324 -112130148 + AluJo SINE Alu 1 310 -2 1518 141 18 128 chr11 36653324 36653620 -112129852 + MER7A DNA MER2_type 104 346 0 360 259 63 118 chr11 36654117 36654464 -112129008 + MLT1L LTR MaLR 200 527 -88 185 0 40 0 chr11 36654473 36654498 -112128974 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2257 157 16 21 chr11 36654511 36654723 -112128749 - MLT1B LTR MaLR -2 388 177 2227 103 0 10 chr11 36654723 36655024 -112128448 - AluSg SINE Alu -12 298 1 2257 157 16 21 chr11 36655024 36655199 -112128273 - MLT1B LTR MaLR -213 177 3 2199 128 0 22 chr11 36655510 36655829 -112127643 + AluSx SINE Alu 1 312 0 2220 106 91 25 chr11 36655832 36656229 -112127243 - MER4B LTR ERV1 -187 423 1 619 217 23 8 chr11 36657772 36657784 -112125688 - AluJo SINE Alu -164 148 138 1418 172 93 11 chr11 36657784 36658063 -112125409 - AluJo SINE Alu -10 302 1 619 217 23 8 chr11 36658063 36658179 -112125293 - AluJo SINE Alu -174 138 18 358 325 62 12 chr11 36658359 36658519 -112124953 + MIR SINE MIR 77 244 -18 235 234 43 117 chr11 36658644 36658738 -112124734 + L2 LINE L2 3210 3296 -17 2452 90 3 0 chr11 36659227 36659537 -112123935 + AluSp SINE Alu 1 311 -2 2036 120 16 19 chr11 36659675 36659984 -112123488 + AluSx SINE Alu 1 308 -4 200 152 0 0 chr11 36660284 36660317 -112123155 - MIR SINE MIR -149 113 81 3487 147 42 52 chr11 36660397 36660541 -112122931 - L1MB7 LINE L1 -21 6163 6019 1833 141 43 0 chr11 36660541 36660818 -112122654 + AluSx SINE Alu 5 293 -19 1793 121 0 0 chr11 36660818 36661057 -112122415 + AluSg/x SINE Alu 71 310 0 3487 147 42 52 chr11 36661057 36661476 -112121996 - L1MB7 LINE L1 -164 6020 5599 2416 103 0 3 chr11 36661476 36661788 -112121684 - AluSx SINE Alu -1 311 1 2185 109 0 59 chr11 36661791 36662113 -112121359 - AluSx SINE Alu -9 303 1 1921 112 29 60 chr11 36662116 36662430 -112121042 - AluSq SINE Alu -9 304 1 3487 147 42 52 chr11 36662430 36662589 -112120883 - L1MB7 LINE L1 -589 5595 5438 2266 115 3 3 chr11 36662591 36662903 -112120569 + AluSx SINE Alu 1 312 0 2576 62 3 0 chr11 36662954 36663259 -112120213 + AluY SINE Alu 1 306 -5 328 229 38 17 chr11 36663450 36663581 -112119891 - L1ME4a LINE L1 -8 6103 1206 188 261 169 56 chr11 36664121 36664263 -112119209 + MIR SINE MIR 93 250 -12 252 209 0 0 chr11 36664578 36664621 -112118851 + L1MC4 LINE L1 6741 6783 -1259 934 155 0 0 chr11 36664621 36664763 -112118709 - FLAM_C SINE Alu 0 143 2 3561 170 144 48 chr11 36664763 36665315 -112118157 + L1MC3 LINE L1 6718 7216 -569 1507 118 0 5 chr11 36665315 36665519 -112117953 - AluSg/x SINE Alu -3 307 105 3561 170 144 48 chr11 36665519 36665918 -112117554 + L1MC3 LINE L1 7216 7760 -25 2237 110 0 3 chr11 36665921 36666220 -112117252 + AluSx SINE Alu 2 299 -13 1476 145 104 48 chr11 36666450 36666719 -112116753 + AluJb SINE Alu 5 288 -24 479 178 0 0 chr11 36667014 36667087 -112116385 - AluJ/FRAM SINE Alu -21 291 219 1704 139 19 85 chr11 36667087 36667403 -112116069 - AluJo SINE Alu -17 295 1 25 65 0 0 chr11 36667407 36667453 -112116019 + AT_rich Low_complexity Low_complexity 1 46 0 24 0 0 0 chr11 36667505 36667529 -112115943 + AT_rich Low_complexity Low_complexity 1 24 0 2316 70 0 14 chr11 36668604 36668914 -112114558 - AluY SINE Alu 0 306 1 180 175 62 150 chr11 36668927 36669007 -112114465 + L2 LINE L2 3156 3228 -85 470 236 164 0 chr11 36669081 36669221 -112114251 + MIR SINE MIR 86 248 -14 489 204 23 68 chr11 36670824 36670956 -112112516 + MIR SINE MIR 81 206 -56 1117 125 18 0 chr11 36671027 36671195 -112112277 - AluSg/x SINE Alu -5 307 137 2183 83 17 24 chr11 36671379 36671667 -112111805 + AluSq SINE Alu 14 299 -14 693 93 19 0 chr11 36671717 36671825 -112111647 + L1MA3 LINE L1 6194 6303 -2 25 0 0 0 chr11 36671825 36671850 -112111622 + AT_rich Low_complexity Low_complexity 1 25 0 1178 249 163 15 chr11 36671866 36672276 -112111196 + L2 LINE L2 2838 3308 -5 263 287 176 9 chr11 36672378 36672486 -112110986 - MIR SINE MIR -65 143 18 2245 117 0 0 chr11 36672508 36672806 -112110666 - AluY SINE Alu -13 298 1 242 326 0 0 chr11 36672828 36672877 -112110595 + L2 LINE L2 3134 3182 -90 1712 131 65 24 chr11 36673091 36673382 -112110090 - AluJo SINE Alu -9 303 1 2235 96 3 10 chr11 36674357 36674648 -112108824 - AluSx SINE Alu -23 289 1 598 246 80 27 chr11 36674828 36675015 -112108457 + MIR SINE MIR 2 198 -64 742 147 0 9 chr11 36675364 36675480 -112107992 + FLAM_C SINE Alu 2 116 -17 353 303 97 19 chr11 36676505 36676660 -112106812 - MIR SINE MIR -19 243 77 1092 108 7 0 chr11 36677041 36677189 -112106283 - AluSg/x SINE Alu -27 283 135 204 291 47 12 chr11 36677381 36677467 -112106005 + MIR SINE MIR 131 219 -43 560 280 42 73 chr11 36678332 36678502 -112104970 + MIR SINE MIR 10 171 -91 1851 141 0 18 chr11 36678502 36678785 -112104687 + AluJb SINE Alu 24 301 -11 560 280 42 73 chr11 36678785 36678875 -112104597 + MIR SINE MIR 171 262 0 2587 81 3 0 chr11 36680073 36680381 -112103091 + AluSp SINE Alu 1 309 -4 2536 93 3 0 chr11 36680588 36680900 -112102572 - AluSp SINE Alu 0 313 1 2148 107 30 6 chr11 36681056 36681393 -112102079 + MER47A DNA MER2_type 22 366 0 413 251 12 123 chr11 36681479 36681650 -112101822 - MIR SINE MIR -3 259 108 207 0 0 0 chr11 36681850 36681873 -112101599 + (A)n Simple_repeat Simple_repeat 1 23 0 1405 181 72 11 chr11 36681873 36682138 -112101334 - AluJo SINE Alu -31 281 1 210 37 0 0 chr11 36682178 36682205 -112101267 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2317 89 7 0 chr11 36682602 36682904 -112100568 + AluSp SINE Alu 1 304 -9 904 168 52 0 chr11 36683407 36683562 -112099910 - FRAM SINE Alu -16 160 1 234 344 0 0 chr11 36684105 36684169 -112099303 + L2 LINE L2 3245 3308 -5 754 241 73 17 chr11 36684544 36684776 -112098696 - MIR SINE MIR -15 247 3 2333 105 0 0 chr11 36687149 36687445 -112096027 + AluSg SINE Alu 1 296 -14 428 252 39 0 chr11 36687825 36687928 -112095544 - MIR SINE MIR -18 244 138 1962 141 20 20 chr11 36688003 36688301 -112095171 - AluJb SINE Alu -14 298 1 619 193 90 14 chr11 36688348 36688424 -112095048 + MER3 DNA MER1_type 50 119 -90 2182 109 31 7 chr11 36688424 36688718 -112094754 - AluSx SINE Alu -11 301 1 619 193 90 14 chr11 36688718 36688786 -112094686 + MER3 DNA MER1_type 119 205 -4 215 192 137 14 chr11 36688834 36688907 -112094565 - MIR SINE MIR -71 191 110 1929 121 3 78 chr11 36689248 36689570 -112093902 - AluSx SINE Alu -14 298 1 569 239 9 0 chr11 36691234 36691343 -112092129 + MER3 DNA MER1_type 14 123 -86 1880 151 3 36 chr11 36691348 36691652 -112091820 - AluJo SINE Alu -18 294 1 424 292 167 0 chr11 36692208 36692352 -112091120 + MIR SINE MIR 83 250 -12 2283 95 37 0 chr11 36692359 36692654 -112090818 - AluSq SINE Alu -7 306 1 210 254 0 18 chr11 36692829 36692884 -112090588 + (TTG)n Simple_repeat Simple_repeat 1 54 0 1866 173 13 13 chr11 36693561 36693862 -112089610 - AluJb SINE Alu -11 301 1 475 256 43 55 chr11 36694432 36694596 -112088876 - MIR3 SINE MIR -38 170 9 1449 149 64 8 chr11 36694641 36694876 -112088596 + AluSx SINE Alu 35 282 -30 264 291 136 10 chr11 36696089 36696192 -112087280 - MIR SINE MIR -116 146 31 192 167 0 0 chr11 36698002 36698038 -112085434 + MIR SINE MIR 110 145 -63 221 367 28 0 chr11 36698722 36698831 -112084641 + MIR SINE MIR 30 141 -67 2471 94 10 0 chr11 36699132 36699441 -112084031 + AluSp SINE Alu 1 312 -1 2356 97 0 0 chr11 36699441 36699739 -112083733 + AluSq SINE Alu 1 299 -14 382 277 78 43 chr11 36699794 36699825 -112083647 + MIR3 SINE MIR 51 79 -129 1944 179 0 6 chr11 36699825 36700138 -112083334 - AluJo SINE Alu -1 311 1 382 277 78 43 chr11 36700138 36700247 -112083225 + MIR3 SINE MIR 79 196 -12 1749 148 0 43 chr11 36701693 36701997 -112081475 - AluJb SINE Alu -21 291 1 403 298 70 0 chr11 36702201 36702315 -112081157 + MIR SINE MIR 34 155 -107 1058 201 47 114 chr11 36702369 36702772 -112080700 - MLT1B LTR MaLR -6 384 9 1180 247 102 0 chr11 36703232 36703536 -112079936 - MER58B DNA MER1_type -6 335 1 345 277 151 24 chr11 36703615 36703781 -112079691 - MIR SINE MIR -41 221 35 2416 98 0 0 chr11 36704088 36704393 -112079079 - AluSx SINE Alu -7 305 1 322 161 18 0 chr11 36704489 36704545 -112078927 - Charlie8 DNA MER1_type -2165 252 196 1915 148 22 0 chr11 36705210 36705488 -112077984 + AluJo SINE Alu 1 284 -28 441 0 0 0 chr11 36705488 36705537 -112077935 + (CATA)n Simple_repeat Simple_repeat 2 50 0 668 232 12 18 chr11 36705834 36705998 -112077474 + MIR SINE MIR 96 258 -4 441 242 0 87 chr11 36706015 36706164 -112077308 - L1MD2 LINE L1 -14 6345 6210 2613 69 0 0 chr11 36706179 36706485 -112076987 + AluY SINE Alu 1 306 -5 942 280 25 0 chr11 36706603 36706846 -112076626 + MIR SINE MIR 14 262 0 32 26 0 0 chr11 36706846 36706885 -112076587 + AT_rich Low_complexity Low_complexity 1 39 0 3017 6 0 0 chr11 36707624 36707942 -112075530 + AluYb8 SINE Alu 1 318 0 446 283 91 32 chr11 36707950 36708169 -112075303 - MIR SINE MIR -28 234 3 180 0 0 0 chr11 36708314 36708334 -112075138 + (CA)n Simple_repeat Simple_repeat 2 21 0 2132 130 0 0 chr11 36710670 36710955 -112072517 - AluSx SINE Alu -27 285 1 2039 111 55 0 chr11 36711255 36711544 -112071928 + AluSx SINE Alu 1 305 -7 2321 110 7 0 chr11 36711548 36711856 -112071616 - AluSq SINE Alu -3 310 1 27 62 0 0 chr11 36711924 36711972 -112071500 + AT_rich Low_complexity Low_complexity 1 48 0 562 253 7 7 chr11 36712064 36712210 -112071262 + MER103 DNA DNA 20 165 -1 787 167 8 8 chr11 36713020 36713152 -112070320 - AluJo SINE Alu -178 134 3 494 233 120 13 chr11 36713164 36713314 -112070158 - MIR SINE MIR -74 188 23 2051 126 61 3 chr11 36713531 36713824 -112069648 - AluSx SINE Alu -2 310 1 582 244 62 12 chr11 36713824 36713984 -112069488 - MIR SINE MIR -47 215 48 622 232 70 81 chr11 36714389 36714648 -112068824 - MIR SINE MIR 0 262 7 1082 176 22 37 chr11 36715728 36716038 -112067434 - MLT1A1 LTR MaLR 0 365 5 492 316 26 26 chr11 36716043 36716233 -112067239 + L1ME4a LINE L1 5777 5966 -155 2306 117 0 16 chr11 36716268 36716585 -112066887 - AluSx SINE Alu 0 312 1 2421 65 0 32 chr11 36716663 36716971 -112066501 - AluY SINE Alu -13 298 1 2264 125 0 0 chr11 36716974 36717269 -112066203 - AluSx SINE Alu -17 295 1 577 200 173 13 chr11 36717753 36717903 -112065569 - MER5A DNA MER1_type -7 182 9 32 26 0 0 chr11 36718464 36718503 -112064969 + AT_rich Low_complexity Low_complexity 1 39 0 1011 178 0 61 chr11 36719800 36720014 -112063458 + AluJo SINE Alu 20 220 -92 2364 102 0 0 chr11 36720042 36720346 -112063126 - AluSx SINE Alu -8 304 1 984 205 30 76 chr11 36720571 36720815 -112062657 + L1ME1 LINE L1 5862 6091 -75 932 115 0 43 chr11 36720815 36720954 -112062518 + FLAM_C SINE Alu 1 133 0 984 205 30 76 chr11 36720954 36721011 -112062461 + L1ME1 LINE L1 6091 6149 -17 1412 168 134 0 chr11 36721043 36721305 -112062167 + AluSx SINE Alu 1 297 -15 185 330 68 10 chr11 36721500 36721603 -112061869 + L2 LINE L2 3034 3142 -171 22 0 0 0 chr11 36721875 36721897 -112061575 + AT_rich Low_complexity Low_complexity 1 22 0 672 258 101 15 chr11 36723139 36723337 -112060135 - MIR SINE MIR -22 240 26 888 153 0 14 chr11 36724313 36724457 -112059015 + FLAM_C SINE Alu 2 143 0 2266 95 0 0 chr11 36725245 36725549 -112057923 - AluSq SINE Alu -9 304 1 32 0 0 0 chr11 36725556 36725588 -112057884 + AT_rich Low_complexity Low_complexity 1 32 0 1105 279 181 29 chr11 36726269 36727380 -112056092 - L2 LINE L2 -1 3312 1959 1582 106 0 5 chr11 36727480 36727697 -112055775 - AluSg/x SINE Alu -14 296 81 478 168 20 10 chr11 36727697 36727798 -112055674 + L1MC4 LINE L1 7939 8040 -2 1360 178 68 14 chr11 36727819 36728100 -112055372 + AluJb SINE Alu 5 300 -2 991 297 137 41 chr11 36728102 36728347 -112055125 - L2 LINE L2 -1366 1948 1728 1574 159 9 60 chr11 36728347 36728472 -112055000 + AluJo SINE Alu 2 132 -180 2053 92 14 14 chr11 36728472 36728767 -112054705 - AluSg SINE Alu -15 295 1 1574 159 9 60 chr11 36728767 36728956 -112054516 + AluJo SINE Alu 132 300 -12 991 297 137 41 chr11 36728956 36729373 -112054099 - L2 LINE L2 -1586 1728 1222 1669 182 16 13 chr11 36729376 36729689 -112053783 - MLT1A1 LTR MaLR 0 365 52 914 200 0 0 chr11 36729737 36729907 -112053565 + FRAM SINE Alu 1 168 -8 1599 284 181 18 chr11 36729907 36730670 -112052802 - L2 LINE L2 -2100 1214 328 262 276 69 11 chr11 36730882 36730969 -112052503 + L2 LINE L2 3216 3307 -6 1173 179 40 134 chr11 36731223 36731263 -112052209 + MLT1A1 LTR MaLR 1 43 -322 2017 95 91 0 chr11 36731263 36731548 -112051924 + AluSp SINE Alu 1 311 -2 1173 179 40 134 chr11 36731548 36731910 -112051562 + MLT1A1 LTR MaLR 43 365 0 248 235 86 37 chr11 36731910 36731991 -112051481 - MIR SINE MIR -90 118 34 36 62 0 0 chr11 36732166 36732230 -112051242 + AT_rich Low_complexity Low_complexity 1 64 0 1854 144 3 0 chr11 36732230 36732515 -112050957 - AluSx SINE Alu -26 286 1 727 260 34 15 chr11 36733573 36733777 -112049695 + MIR SINE MIR 35 242 -20 1617 172 3 14 chr11 36735455 36735752 -112047720 + AluJb SINE Alu 1 294 -18 656 247 133 46 chr11 36735753 36736077 -112047395 - L1ME4a LINE L1 -11 6110 5759 2258 105 0 0 chr11 36737390 36737696 -112045776 - AluSx SINE Alu -6 306 1 1189 188 5 5 chr11 36737709 36737917 -112045555 + Tigger7 DNA MER2_type 29 236 -497 490 206 43 0 chr11 36737916 36738008 -112045464 + Tigger7 DNA MER2_type 2386 2481 -10 * 767 176 0 8 chr11 36738032 36738163 -112045309 - FLAM_C SINE Alu -2 131 2 405 241 107 0 chr11 36738181 36738293 -112045179 - MIR SINE MIR -28 234 111 645 179 9 0 chr11 36738293 36738399 -112045073 + AluJb SINE Alu 2 108 -204 189 147 0 0 chr11 36738435 36738469 -112045003 + (GGGGA)n Simple_repeat Simple_repeat 3 36 0 366 271 75 0 chr11 36738469 36738576 -112044896 - MIR SINE MIR -134 128 14 527 212 257 12 chr11 36739452 36739693 -112043779 - L1MC4 LINE L1 -2 8040 7741 2251 101 3 0 chr11 36739990 36740298 -112043174 - AluSx SINE Alu -1 311 3 1066 144 0 17 chr11 36740330 36740510 -112042962 + FRAM SINE Alu 1 176 0 264 59 0 0 chr11 36740736 36740770 -112042702 + (A)n Simple_repeat Simple_repeat 1 34 0 2359 65 3 0 chr11 36741455 36741749 -112041723 - AluSg SINE Alu -15 295 1 756 231 23 17 chr11 36741810 36741983 -112041489 + MIR SINE MIR 89 262 0 2176 109 10 3 chr11 36742341 36742652 -112040820 + AluSq SINE Alu 1 313 0 1694 247 141 10 chr11 36742814 36743316 -112040156 + MER69 DNA AcHobo 1 568 -1958 1445 167 204 18 chr11 36743314 36743750 -112039722 + MER69 DNA AcHobo 2010 2526 0 * 200 211 0 0 chr11 36743941 36743979 -112039493 + L2 LINE L2 2214 2251 -1063 2301 96 0 0 chr11 36745612 36745924 -112037548 + AluSx SINE Alu 1 312 0 851 201 0 0 chr11 36746461 36746620 -112036852 - AluJb SINE Alu -19 293 135 422 244 89 32 chr11 36746621 36746744 -112036728 - MIR SINE MIR -114 148 19 332 237 160 38 chr11 36747449 36747580 -112035892 + MIR SINE MIR 116 262 0 432 232 32 48 chr11 36748087 36748212 -112035260 + L2 LINE L2 3190 3312 -1 262 335 45 17 chr11 36748247 36748423 -112035049 - MIR SINE MIR -18 244 64 964 195 17 0 chr11 36748469 36748643 -112034829 - MER45A DNA AcHobo -1 177 1 195 359 113 9 chr11 36749637 36749743 -112033729 - L3 LINE CR1 -16 1561 1445 1491 197 42 3 chr11 36751244 36751533 -112031939 + AluJb SINE Alu 1 300 -12 1390 173 26 79 chr11 36751555 36751728 -112031744 - L1PA16 LINE L1 -20 6146 5998 1811 142 0 24 chr11 36751728 36752023 -112031449 - AluSx SINE Alu -24 288 1 1390 173 26 79 chr11 36752023 36752191 -112031281 - L1PA16 LINE L1 -168 5998 5823 313 338 15 29 chr11 36752208 36752344 -112031128 - MIR3 SINE MIR -31 177 44 316 214 104 59 chr11 36753278 36753404 -112030068 + MIR SINE MIR 13 145 -63 212 0 0 35 chr11 36753414 36753443 -112030029 + (TTTTA)n Simple_repeat Simple_repeat 5 32 0 1961 119 4 0 chr11 36753443 36753721 -112029751 - AluSx SINE Alu -33 279 1 591 88 12 0 chr11 36753721 36753801 -112029671 - AluS SINE Alu -230 82 2 202 313 0 38 chr11 36753826 36753906 -112029566 + MIR SINE MIR 186 262 0 2365 81 3 0 chr11 36754654 36754961 -112028511 + AluSp SINE Alu 1 308 -5 1117 273 126 23 chr11 36755253 36755776 -112027696 - MLT1L LTR MaLR 0 615 39 312 324 110 14 chr11 36755956 36756075 -112027397 + L1MC5 LINE L1 7526 7663 -298 1688 145 14 0 chr11 36756075 36756381 -112027091 + AluSx SINE Alu 26 312 0 312 324 110 14 chr11 36756381 36756406 -112027066 + L1MC5 LINE L1 7663 7684 -277 945 167 5 42 chr11 36756452 36756644 -112026828 - AluJb SINE Alu -39 273 89 2197 89 10 0 chr11 36756668 36756960 -112026512 - AluSx SINE Alu -17 295 1 453 221 83 39 chr11 36756967 36757171 -112026301 + L1MC5 LINE L1 7705 7917 -44 432 295 199 25 chr11 36757202 36757568 -112025904 + L2 LINE L2 2883 3312 -1 2103 118 13 0 chr11 36757660 36757964 -112025508 - AluSq SINE Alu -5 308 1 277 190 35 17 chr11 36757965 36758023 -112025449 - MIR SINE MIR -55 207 149 198 340 96 13 chr11 36758569 36758725 -112024747 + MIR3 SINE MIR 17 185 -23 621 165 0 10 chr11 36758755 36758852 -112024620 - AluJb SINE Alu -214 98 3 737 246 100 15 chr11 36759128 36759340 -112024132 + MIR SINE MIR 30 262 0 182 231 0 58 chr11 36759401 36759422 -112024050 + L2 LINE L2 3265 3286 -27 1897 142 7 0 chr11 36759422 36759778 -112023694 + AluSx SINE Alu 1 312 0 182 231 0 58 chr11 36759778 36759808 -112023664 + L2 LINE L2 3286 3313 0 931 243 45 59 chr11 36759906 36760094 -112023378 + L1MDa LINE L1 2238 2427 -4294 1829 157 0 23 chr11 36760094 36760399 -112023073 + AluSx SINE Alu 1 298 -14 931 243 45 59 chr11 36760399 36760541 -112022931 + L1MDa LINE L1 2427 2569 -4152 1975 123 7 23 chr11 36760541 36760849 -112022623 + AluSx SINE Alu 1 303 -9 931 243 45 59 chr11 36760849 36761070 -112022402 + L1MDa LINE L1 2569 2833 -3888 652 301 31 27 chr11 36762084 36762340 -112021132 + MIR SINE MIR 6 262 0 508 287 87 68 chr11 36763268 36763589 -112019883 + MLT1K LTR MaLR 193 519 -69 234 293 131 0 chr11 36763843 36763942 -112019530 + MIR SINE MIR 20 131 -77 641 300 19 20 chr11 36764008 36764242 -112019230 + MIR SINE MIR 30 261 -1 319 328 152 37 chr11 36765724 36765968 -112017504 + L2 LINE L2 2988 3259 -13 341 324 81 14 chr11 36766769 36766917 -112016555 - MIR SINE MIR -13 249 92 636 251 36 26 chr11 36766923 36767118 -112016354 + L1ME3 LINE L1 5927 6123 -39 200 83 0 28 chr11 36767160 36767196 -112016276 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2011 128 6 13 chr11 36767227 36767540 -112015932 + AluSx SINE Alu 1 311 -1 314 292 117 32 chr11 36769987 36770141 -112013331 - MIR SINE MIR -36 226 60 1521 194 0 7 chr11 36770143 36770426 -112013046 + AluJo SINE Alu 32 312 0 751 267 100 17 chr11 36770588 36770828 -112012644 - MIR SINE MIR -1 261 2 746 291 8 30 chr11 36771284 36771518 -112011954 + MIR SINE MIR 21 249 -13 2091 135 0 0 chr11 36771852 36772156 -112011316 + AluSx SINE Alu 1 304 -8 1800 134 16 36 chr11 36772168 36772473 -112010999 + AluSx SINE Alu 1 299 -13 212 339 16 0 chr11 36772473 36772535 -112010937 - MER5A DNA MER1_type -56 133 71 196 315 54 22 chr11 36772772 36772864 -112010608 - MIR SINE MIR -5 257 163 610 208 8 0 chr11 36772864 36772989 -112010483 - FLAM_C SINE Alu -15 128 3 216 0 0 0 chr11 36773797 36773821 -112009651 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 222 208 0 38 chr11 36773824 36773877 -112009595 + GA-rich Low_complexity Low_complexity 3 53 0 571 304 22 16 chr11 36774080 36774264 -112009208 - MIR SINE MIR -27 235 51 528 279 58 32 chr11 36774853 36775043 -112008429 - MIR SINE MIR -5 257 63 1021 176 31 10 chr11 36775242 36775435 -112008037 + MER3 DNA MER1_type 13 209 0 316 264 196 0 chr11 36776260 36776408 -112007064 + MIR SINE MIR 60 236 -26 477 256 108 8 chr11 36776472 36776630 -112006842 + MIR SINE MIR 10 167 -63 1129 118 0 0 chr11 36776671 36776891 -112006581 - AluSg/x SINE Alu 0 352 133 386 267 17 42 chr11 36777144 36777200 -112006272 + MER5B DNA MER1_type 62 118 -60 186 118 0 0 chr11 36777200 36777234 -112006238 + (CA)n Simple_repeat Simple_repeat 2 35 0 2069 126 3 0 chr11 36777234 36777527 -112005945 - AluSx SINE Alu -18 294 1 386 267 17 42 chr11 36777527 36777589 -112005883 + MER5B DNA MER1_type 116 178 0 246 147 29 15 chr11 36777591 36777659 -112005813 - MIR SINE MIR -84 178 110 1841 164 0 17 chr11 36778253 36778551 -112004921 - AluJb SINE Alu -19 293 1 463 199 50 50 chr11 36778620 36778761 -112004711 + L2 LINE L2 2379 2519 -795 697 219 158 45 chr11 36778761 36779071 -112004401 + L2 LINE L2 2632 2976 -338 372 198 49 12 chr11 36779150 36779231 -112004241 + L2 LINE L2 3229 3312 -1 344 304 29 0 chr11 36780417 36780519 -112002953 - MIR3 SINE MIR -19 189 85 2203 138 0 0 chr11 36780907 36781219 -112002253 + AluSx SINE Alu 1 312 0 229 206 88 0 chr11 36782198 36782266 -112001206 + L2 LINE L2 2890 2963 -309 319 293 20 0 chr11 36783333 36783432 -112000040 - MIR SINE MIR -30 232 132 461 206 12 2 chr11 36783435 36783594 -111999878 + MER20 DNA MER1_type 3 202 -17 278 248 77 34 chr11 36783605 36783722 -111999750 - MIR SINE MIR -132 130 9 262 310 116 8 chr11 36783789 36783918 -111999554 - MIR SINE MIR -118 144 2 456 287 118 31 chr11 36786089 36786343 -111997129 + L2 LINE L2 3034 3309 -4 570 241 86 6 chr11 36786348 36786522 -111996950 - MIR SINE MIR -13 249 62 1967 151 3 22 chr11 36786527 36786845 -111996627 + AluJo SINE Alu 1 312 0 212 245 0 19 chr11 36787104 36787157 -111996315 + GA-rich Low_complexity Low_complexity 1 52 0 848 121 0 71 chr11 36788088 36788228 -111995244 + FLAM_C SINE Alu 1 130 -13 206 143 0 24 chr11 36788228 36788270 -111995202 + (TGGGGG)n Simple_repeat Simple_repeat 5 45 0 676 230 64 39 chr11 36789104 36789308 -111994164 + MIR SINE MIR 33 241 -21 196 122 61 0 chr11 36791970 36792019 -111991453 + G-rich Low_complexity Low_complexity 3 54 0 959 211 53 51 chr11 36793680 36794035 -111989437 + L1MC5 LINE L1 7378 7733 -228 396 0 0 0 chr11 36794279 36794323 -111989149 + (TA)n Simple_repeat Simple_repeat 2 45 0 564 211 19 32 chr11 36795099 36795255 -111988217 + L2 LINE L2 3160 3313 0 2013 144 7 0 chr11 36795447 36795732 -111987740 - AluSx SINE Alu -25 287 1 925 174 28 47 chr11 36795880 36796030 -111987442 + MER3 DNA MER1_type 1 147 -62 1554 161 8 4 chr11 36796030 36796273 -111987199 - AluJb SINE Alu -25 287 44 925 174 28 47 chr11 36796273 36796335 -111987137 + MER3 DNA MER1_type 147 209 0 2506 87 3 0 chr11 36796797 36797108 -111986364 - AluSp SINE Alu -1 312 1 267 103 0 0 chr11 36798366 36798405 -111985067 + (A)n Simple_repeat Simple_repeat 1 39 0 189 136 0 91 chr11 36798580 36798624 -111984848 + L3b LINE CR1 1188 1227 -356 1747 61 0 0 chr11 36798852 36799065 -111984407 + AluY SINE Alu 91 303 -8 554 92 13 0 chr11 36799069 36799145 -111984327 - MADE1 DNA Mariner -3 77 1 369 0 0 0 chr11 36799282 36799323 -111984149 + (TG)n Simple_repeat Simple_repeat 2 42 0 1826 125 3 56 chr11 36799323 36799617 -111983855 - AluSx SINE Alu -32 280 1 200 331 34 68 chr11 36799850 36799960 -111983512 - MER5B DNA MER1_type -32 146 41 1755 166 10 14 chr11 36799960 36800256 -111983216 + AluJo SINE Alu 1 295 -17 200 331 34 68 chr11 36800256 36800293 -111983179 - MER5B DNA MER1_type -137 41 4 234 0 0 0 chr11 36800550 36800576 -111982896 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2514 93 0 0 chr11 36800800 36801111 -111982361 + AluSx SINE Alu 1 311 -1 3859 89 9 2 chr11 36801114 36801641 -111981831 - L1PB1 LINE L1 -5 6146 5616 8456 176 18 6 chr11 36801641 36803638 -111979834 + L1PB1 LINE L1 3581 5605 -546 2210 82 3 31 chr11 36803758 36804074 -111979398 - AluSp SINE Alu 0 308 1 2012 140 7 0 chr11 36804185 36804485 -111978987 - AluSx SINE Alu -10 302 1 305 301 121 23 chr11 36804590 36804763 -111978709 + L2 LINE L2 3124 3313 0 2217 130 0 0 chr11 36805619 36805919 -111977553 - AluSx SINE Alu -12 300 1 2360 77 0 22 chr11 36806172 36806485 -111976987 - AluY SINE Alu -5 306 1 2509 80 3 0 chr11 36806508 36806819 -111976653 + AluSp SINE Alu 1 312 -1 2090 124 3 16 chr11 36807103 36807417 -111976055 + AluSx SINE Alu 1 310 -2 584 177 26 0 chr11 36807514 36807627 -111975845 - L1MC3 LINE L1 0 7785 7670 298 47 47 47 chr11 36807656 36807742 -111975730 + (TTTTTA)n Simple_repeat Simple_repeat 3 88 0 3101 33 3 3 chr11 36807745 36808113 -111975359 - L1PA7 LINE L1 -4 6150 5783 4720 228 54 56 chr11 36808138 36809314 -111974158 - L1 LINE L1 -2576 4989 3812 317 24 24 0 chr11 36809314 36809356 -111974116 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 4720 228 54 56 chr11 36809356 36809894 -111973578 - L1 LINE L1 -3753 3812 3182 1886 180 0 0 chr11 36809894 36810189 -111973283 - AluSx SINE Alu -17 295 1 4720 228 54 56 chr11 36810189 36810303 -111973169 - L1 LINE L1 -4383 3182 3069 1625 61 37 9 chr11 36810305 36810519 -111972953 + Tigger1 DNA MER2_type 1042 1261 -1157 1295 236 4 0 chr11 36810524 36810800 -111972672 - L1M2 LINE L1 -4177 2991 2715 1283 132 11 0 chr11 36810807 36810996 -111972476 - AluSx SINE Alu -113 199 9 7096 130 11 37 chr11 36810996 36811290 -111972182 + Tigger1 DNA MER2_type 302 602 -1816 2217 117 7 0 chr11 36811290 36811588 -111971884 - AluSx SINE Alu -7 305 6 7096 130 11 37 chr11 36811588 36812398 -111971074 + Tigger1 DNA MER2_type 602 1377 -1041 2173 124 3 0 chr11 36812398 36812697 -111970775 - AluSp SINE Alu -13 300 1 7096 130 11 37 chr11 36812697 36812756 -111970716 + Tigger1 DNA MER2_type 1377 1436 -982 1361 136 14 9 chr11 36812754 36812974 -111970498 + Tigger1 DNA MER2_type 2194 2414 -4 * 453 228 22 0 chr11 36812975 36813067 -111970405 - L1M2 LINE L1 -5187 1981 1888 329 320 58 82 chr11 36813070 36813485 -111969987 - L1M2 LINE L1 -6760 408 4 461 277 163 26 chr11 36813634 36813882 -111969590 + L1ME4a LINE L1 5634 5847 -274 1839 127 94 0 chr11 36813882 36814158 -111969314 - AluSx SINE Alu -10 302 1 461 277 163 26 chr11 36814158 36814338 -111969134 + L1ME4a LINE L1 5847 6121 0 706 319 125 16 chr11 36814958 36815120 -111968352 + L1ME4a LINE L1 5562 5705 -416 233 29 29 0 chr11 36815120 36815154 -111968318 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 706 319 125 16 chr11 36815154 36815496 -111967976 + L1ME4a LINE L1 5705 6121 0 589 203 167 36 chr11 36815578 36815800 -111967672 - MIR SINE MIR -6 256 6 262 125 25 0 chr11 36816417 36816457 -111967015 + LTR67 LTR ERVL 99 139 -418 * 279 121 155 0 chr11 36816432 36816490 -111966982 + MLT1J LTR MaLR 110 176 -335 2436 62 3 0 chr11 36817114 36817406 -111966066 + AluY SINE Alu 3 295 -16 405 150 30 10 chr11 36817590 36817690 -111965782 + CT-rich Low_complexity Low_complexity 3 104 0 861 277 114 40 chr11 36817770 36818217 -111965255 + LTR33 LTR ERVL 1 480 -41 229 241 0 19 chr11 36818259 36818313 -111965159 + LTR33 LTR ERVL 469 521 0 774 221 14 60 chr11 36818322 36818396 -111965076 - MER3 DNA MER1_type 0 209 133 2437 85 0 0 chr11 36818396 36818690 -111964782 - AluSx SINE Alu -18 294 1 774 221 14 60 chr11 36818690 36818832 -111964640 - MER3 DNA MER1_type -76 133 3 933 243 97 58 chr11 36819020 36819051 -111964421 - L1ME3A LINE L1 -233 5937 5907 445 230 70 122 chr11 36819051 36819410 -111964062 - L1MB4 LINE L1 -284 5896 5520 2456 50 3 26 chr11 36819410 36819713 -111963759 - AluY SINE Alu -15 296 1 445 230 70 122 chr11 36819713 36819806 -111963666 - L1MB4 LINE L1 -660 5520 5483 3694 53 0 24 chr11 36819806 36820273 -111963199 - L1PA5 LINE L1 -4 6150 5695 445 230 70 122 chr11 36820273 36820397 -111963075 - L1MB4 LINE L1 -697 5483 5354 * 733 269 35 29 chr11 36820377 36820723 -111962749 - L1MB4 LINE L1 -1187 4959 4612 55 43 0 11 chr11 36820812 36820889 -111962583 + AT_rich Low_complexity Low_complexity 1 78 -15 2092 109 3 55 chr11 36820889 36821201 -111962271 - AluSx SINE Alu -16 296 1 55 43 0 11 chr11 36821201 36821217 -111962255 + AT_rich Low_complexity Low_complexity 78 93 0 969 258 49 50 chr11 36821257 36821811 -111961661 - L1MB4 LINE L1 -1721 4425 3873 628 332 71 46 chr11 36821990 36822382 -111961090 - MLT1K LTR MaLR -138 450 49 381 235 10 0 chr11 36822522 36822620 -111960852 - MIR SINE MIR -26 236 138 15568 175 32 14 chr11 36822767 36829365 -111954107 - L1PB1 LINE L1 -1 6866 6 1945 150 3 0 chr11 36829429 36829723 -111953749 + AluSx SINE Alu 1 295 -17 2116 131 3 3 chr11 36830291 36830603 -111952869 - AluSx SINE Alu 0 312 1 191 212 0 0 chr11 36830657 36830690 -111952782 - MIR SINE MIR -94 114 82 333 296 105 40 chr11 36830986 36831233 -111952239 + MLT1K LTR MaLR 326 588 0 21 0 0 0 chr11 36831394 36831415 -111952057 + AT_rich Low_complexity Low_complexity 1 21 0 210 213 50 12 chr11 36831536 36831616 -111951856 + (TA)n Simple_repeat Simple_repeat 2 84 0 261 273 101 30 chr11 36831617 36831716 -111951756 - MIR SINE MIR -3 259 154 378 271 25 17 chr11 36832115 36832128 -111951344 - MIR SINE MIR -123 139 128 1574 167 3 65 chr11 36832128 36832451 -111951021 + AluJo SINE Alu 1 303 -9 378 271 25 17 chr11 36832451 36832555 -111950917 - MIR SINE MIR -134 128 21 2180 78 4 4 chr11 36832639 36832950 -111950522 + AluY SINE Alu 1 311 0 1080 300 68 62 chr11 36833550 36834017 -111949455 - MER115 DNA AcHobo 0 693 224 * 3205 123 8 29 chr11 36834015 36834475 -111948997 + Tigger1 DNA MER2_type 1131 1580 -838 2118 139 0 0 chr11 36834475 36834777 -111948695 + AluSx SINE Alu 1 302 -10 3205 123 8 29 chr11 36834777 36834826 -111948646 + Tigger1 DNA MER2_type 1580 1629 -789 2109 105 25 0 chr11 36834901 36835214 -111948258 - AluSx SINE Alu 0 320 1 2435 32 4 4 chr11 36835370 36835686 -111947786 + AluY SINE Alu 1 316 0 1973 125 21 4 chr11 36836300 36836605 -111946867 + AluSx SINE Alu 1 310 0 449 145 60 12 chr11 36836686 36836769 -111946703 + MER3 DNA MER1_type 1 87 -122 1716 180 7 3 chr11 36836985 36837274 -111946198 - AluJo SINE Alu -18 294 5 24 67 0 0 chr11 36837708 36837753 -111945719 + AT_rich Low_complexity Low_complexity 1 45 0 249 327 79 10 chr11 36838790 36838891 -111944581 + MIR SINE MIR 81 188 -74 257 334 67 13 chr11 36838935 36839099 -111944373 + MIR SINE MIR 8 174 -63 474 311 3 22 chr11 36839150 36839468 -111944004 + CT-rich Low_complexity Low_complexity 1 311 0 482 298 8 27 chr11 36839481 36839772 -111943700 + CT-rich Low_complexity Low_complexity 1 285 0 299 298 165 13 chr11 36840482 36840640 -111942832 + MIR3 SINE MIR 3 184 -24 237 327 148 0 chr11 36840698 36840799 -111942673 + L2 LINE L2 3190 3305 -8 2627 118 74 7 chr11 36841919 36842350 -111941122 + L1MA8 LINE L1 5831 6290 -1 344 243 0 0 chr11 36842352 36842422 -111941050 - LTR33 LTR ERVL -447 74 5 1378 176 70 37 chr11 36843031 36843337 -111940135 + AluJb SINE Alu 1 315 0 201 108 0 0 chr11 36843755 36843792 -111939680 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 2215 111 3 0 chr11 36844074 36844371 -111939101 - AluSx SINE Alu -14 298 1 218 89 44 0 chr11 36844384 36844429 -111939043 + (TTTAA)n Simple_repeat Simple_repeat 4 50 0 4388 187 51 31 chr11 36844516 36845362 -111938110 + MER21B LTR ERV1 1 863 0 1628 135 30 61 chr11 36846183 36846479 -111936993 + AluJb SINE Alu 12 298 -14 289 325 38 14 chr11 36847154 36847366 -111936106 - HAL1 LINE L1 -868 1639 1423 403 259 166 34 chr11 36847452 36847657 -111935815 - L1MEd LINE L1 -4892 1227 996 2234 112 3 0 chr11 36848051 36848346 -111935126 - AluSg SINE Alu -14 296 1 743 273 40 114 chr11 36849830 36850146 -111933326 - MLT1K LTR MaLR 0 588 315 2358 102 0 13 chr11 36850146 36850461 -111933011 - AluSx SINE Alu -1 311 1 743 273 40 114 chr11 36850461 36850599 -111932873 - MLT1K LTR MaLR -273 315 168 225 213 288 12 chr11 36851649 36851729 -111931743 + MIR SINE MIR 94 195 -67 600 302 13 2 chr11 36852283 36852503 -111930969 + L1MC4a LINE L1 5623 5819 -302 2373 92 0 3 chr11 36852510 36852815 -111930657 + AluSc SINE Alu 1 304 -5 294 164 0 0 chr11 36852815 36852870 -111930602 + GA-rich Low_complexity Low_complexity 1 55 0 23 0 0 0 chr11 36853924 36853947 -111929525 + AT_rich Low_complexity Low_complexity 1 23 0 490 76 0 0 chr11 36853947 36854013 -111929459 - L1PA16 LINE L1 -9 6157 6092 26 64 0 0 chr11 36855510 36855557 -111927915 + AT_rich Low_complexity Low_complexity 1 47 0 2245 114 0 0 chr11 36855661 36855959 -111927513 - AluSx SINE Alu -14 298 1 427 227 58 122 chr11 36856493 36856836 -111926636 + L1ME4a LINE L1 5789 6109 -12 771 152 9 0 chr11 36857412 36857524 -111925948 - MER81 DNA DNA 0 114 2 2079 127 3 0 chr11 36857749 36858040 -111925432 + AluSx SINE Alu 18 309 -3 6172 127 27 12 chr11 36858353 36859497 -111923975 + L1PB3 LINE L1 4998 6302 -1 2055 143 0 7 chr11 36859997 36860304 -111923168 - AluJo SINE Alu -7 305 1 288 0 0 0 chr11 36861359 36861391 -111922081 + (T)n Simple_repeat Simple_repeat 1 32 0 1535 174 3 24 chr11 36861955 36862243 -111921229 - AluJo SINE Alu -20 292 11 2149 123 0 7 chr11 36862253 36862554 -111920918 - AluSx SINE Alu -13 299 1 2421 184 54 68 chr11 36862842 36863489 -111919983 - L1MC4 LINE L1 0 8042 7405 2314 99 3 0 chr11 36863504 36863798 -111919674 - AluSp SINE Alu -17 296 2 185 135 0 27 chr11 36863891 36863928 -111919544 + L3 LINE CR1 428 463 -1114 567 271 89 61 chr11 36864020 36864300 -111919172 - L2 LINE L2 -1 3312 3025 1884 113 50 3 chr11 36864714 36864996 -111918476 + AluSx SINE Alu 1 295 -17 842 285 16 16 chr11 36866120 36866376 -111917096 + MIR SINE MIR 2 257 -5 1237 253 47 24 chr11 36866708 36867132 -111916340 + MLT1J LTR MaLR 1 477 -34 545 270 13 33 chr11 36867180 36867332 -111916140 - MIR SINE MIR -108 154 6 185 337 70 47 chr11 36868160 36868246 -111915226 + L2 LINE L2 3179 3266 -6 608 290 119 22 chr11 36868381 36868743 -111914729 + L1ME4a LINE L1 5520 5916 -205 2538 57 0 3 chr11 36868910 36869211 -111914261 + AluY SINE Alu 1 300 -11 2197 128 0 0 chr11 36869250 36869562 -111913910 - AluSx SINE Alu 0 312 1 25 51 0 0 chr11 36870344 36870383 -111913089 + AT_rich Low_complexity Low_complexity 1 39 0 2208 112 0 13 chr11 36870572 36870877 -111912595 - AluSx SINE Alu -11 301 1 1125 216 18 0 chr11 36871180 36871398 -111912074 + MIR SINE MIR 28 249 -13 249 254 118 64 chr11 36873246 36873356 -111910116 + L2 LINE L2 3156 3271 -1 345 331 131 44 chr11 36873439 36873759 -111909713 - L2 LINE L2 0 3272 2925 205 381 62 0 chr11 36874101 36874198 -111909274 - MIR3 SINE MIR -93 115 13 2292 102 0 0 chr11 36874305 36874600 -111908872 - AluSx SINE Alu -1 311 17 254 313 30 22 chr11 36874984 36875118 -111908354 - L1MC4 LINE L1 -9 8033 7899 2570 178 54 18 chr11 36875119 36875266 -111908206 - L1ME2 LINE L1 -308 5856 5716 1735 186 3 7 chr11 36875266 36875567 -111907905 + AluJb SINE Alu 1 300 -12 2570 178 54 18 chr11 36875567 36875975 -111907497 - L1ME2 LINE L1 -448 5716 5281 770 234 106 56 chr11 36876013 36876074 -111907398 - MLT1J1 LTR MaLR -18 428 372 2322 100 7 0 chr11 36876074 36876374 -111907098 + AluSp SINE Alu 1 302 -11 770 234 106 56 chr11 36876374 36876632 -111906840 - MLT1J1 LTR MaLR -74 372 93 303 197 74 0 chr11 36877635 36877704 -111905768 - L1ME LINE L1 -483 5679 5606 2529 133 106 0 chr11 36877766 36878173 -111905299 - LTR47A LTR ERVL -2 450 1 21 0 0 0 chr11 36878712 36878733 -111904739 + AT_rich Low_complexity Low_complexity 1 21 0 2338 107 0 19 chr11 36878961 36879279 -111904193 + AluSx SINE Alu 1 312 0 212 237 97 21 chr11 36879639 36879732 -111903740 + MIR SINE MIR 97 196 -66 2191 91 3 10 chr11 36880501 36880797 -111902675 - AluSp SINE Alu -19 294 1 596 163 131 44 chr11 36880936 36881096 -111902376 + MER5B DNA MER1_type 2 175 -3 531 238 93 29 chr11 36881516 36881707 -111901765 - MIR SINE MIR -52 210 5 21 0 0 0 chr11 36882281 36882302 -111901170 + AT_rich Low_complexity Low_complexity 1 21 0 3665 149 65 2 chr11 36883369 36883938 -111899534 - MER6A DNA MER2_type 0 605 1 191 284 45 15 chr11 36885164 36885231 -111898241 - MIR SINE MIR -4 258 190 1892 138 4 4 chr11 36886351 36886627 -111896845 + AluJb SINE Alu 27 302 -10 180 0 0 0 chr11 36887129 36887149 -111896323 + (ATG)n Simple_repeat Simple_repeat 2 21 0 269 320 47 23 chr11 36888569 36888697 -111894775 + MIR SINE MIR 31 161 -101 23 0 0 0 chr11 36889278 36889301 -111894171 + AT_rich Low_complexity Low_complexity 1 23 0 2344 79 23 0 chr11 36890955 36891259 -111892213 - AluSx SINE Alu -1 311 1 207 328 101 35 chr11 36891803 36892001 -111891471 - L2 LINE L2 -158 3114 2904 1728 143 29 29 chr11 36894200 36894507 -111888965 - AluJo SINE Alu -3 309 3 391 224 56 0 chr11 36896042 36896167 -111887305 - L1ME4a LINE L1 0 6121 5990 204 40 0 0 chr11 36896170 36896195 -111887277 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1935 114 29 0 chr11 36896198 36896471 -111887001 - AluSx SINE Alu -31 281 1 288 303 74 31 chr11 36897268 36897430 -111886042 + MIR3 SINE MIR 30 198 -10 233 340 29 0 chr11 36899522 36899625 -111883847 + L1ME LINE L1 322 427 -5945 2796 19 0 13 chr11 36900249 36900563 -111882909 + AluY SINE Alu 1 310 -1 264 311 31 10 chr11 36900583 36900745 -111882727 + L1ME LINE L1 1056 1276 -5106 289 210 111 99 chr11 36900755 36901108 -111882364 + L1MEd LINE L1 685 1041 -5078 279 220 68 0 chr11 36901304 36901363 -111882109 + L2 LINE L2 3250 3312 -1 22 0 0 0 chr11 36901906 36901928 -111881544 + AT_rich Low_complexity Low_complexity 1 22 0 806 168 8 0 chr11 36902520 36902639 -111880833 + FLAM_A SINE Alu 1 120 -13 181 204 23 23 chr11 36903096 36903140 -111880332 - MIR SINE MIR -178 84 41 201 234 64 75 chr11 36903323 36903417 -111880055 - MIR SINE MIR -13 249 157 2166 122 0 0 chr11 36903425 36903719 -111879753 - AluSx SINE Alu -18 294 1 2348 240 117 13 chr11 36903724 36904432 -111879040 - MER21B LTR ERV1 -75 788 7 211 323 43 0 chr11 36904441 36904534 -111878938 - MIR SINE MIR -101 161 65 2098 133 0 13 chr11 36906241 36906556 -111876916 + AluJb SINE Alu 2 312 0 1960 100 0 0 chr11 36906756 36907006 -111876466 + AluSx SINE Alu 1 250 -62 856 95 66 7 chr11 36907011 36907148 -111876324 + L1MB3 LINE L1 6039 6183 0 212 222 150 36 chr11 36907148 36907231 -111876241 + L2 LINE L2 1920 1992 -1322 436 192 323 0 chr11 36907231 36907330 -111876142 - FLAM_A SINE Alu -2 131 1 212 222 150 36 chr11 36907330 36907413 -111876059 + L2 LINE L2 1992 2105 -1209 212 262 0 0 chr11 36907417 36907459 -111876013 + polypyrimidine Low_complexity Low_complexity 3 44 0 2976 141 33 18 chr11 36907463 36907974 -111875498 - L1MB8 LINE L1 -5 6173 5655 2162 92 7 14 chr11 36908003 36908298 -111875174 + AluSg SINE Alu 1 293 -17 4117 139 89 1 chr11 36908382 36909042 -111874430 + LTR62 LTR ERVK 1 718 -1 2056 136 0 3 chr11 36909151 36909446 -111874026 + AluSx SINE Alu 1 294 -18 2011 127 3 50 chr11 36909751 36910074 -111873398 - AluSx SINE Alu -4 308 1 1906 161 0 0 chr11 36910281 36910579 -111872893 - AluJb SINE Alu -14 298 1 727 211 83 162 chr11 36910674 36910797 -111872675 + MLT1C LTR MaLR 1 132 -335 2075 122 10 7 chr11 36910797 36911092 -111872380 + AluSq SINE Alu 3 298 -15 727 211 83 162 chr11 36911092 36911475 -111871997 + MLT1C LTR MaLR 132 467 0 574 245 40 0 chr11 36911946 36912097 -111871375 - Charlie8 DNA MER1_type -2167 250 94 613 168 19 0 chr11 36912334 36912441 -111871031 + FLAM_A SINE Alu 24 132 -10 936 117 0 8 chr11 36913326 36913454 -111870018 + FLAM_C SINE Alu 3 129 -4 216 0 0 0 chr11 36914764 36914788 -111868684 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2216 101 0 10 chr11 36914788 36915076 -111868396 - AluSx SINE Alu -25 287 1 630 298 107 5 chr11 36915461 36915676 -111867796 + MIR SINE MIR 5 241 -21 212 349 0 16 chr11 36915834 36915897 -111867575 - MIR SINE MIR -190 72 11 332 226 267 34 chr11 36916496 36916642 -111866830 - L2 LINE L2 -503 2811 2632 698 269 149 30 chr11 36916754 36917197 -111866275 + L2 LINE L2 2780 3291 -22 780 171 30 3 chr11 36917210 36917778 -111865694 + (CTATA)n Simple_repeat Simple_repeat 1 583 0 880 126 29 0 chr11 36917790 36917964 -111865508 + (CTATA)n Simple_repeat Simple_repeat 2 180 0 451 163 31 16 chr11 36917977 36918106 -111865366 + (CTATA)n Simple_repeat Simple_repeat 5 135 0 1013 89 24 0 chr11 36918123 36918291 -111865181 + (CTATA)n Simple_repeat Simple_repeat 5 176 0 321 332 137 19 chr11 36918407 36918612 -111864860 + L2 LINE L2 2715 2943 -371 532 288 31 0 chr11 36918798 36918958 -111864514 - MIR SINE MIR -6 256 92 194 286 86 29 chr11 36919043 36919148 -111864324 - MIR SINE MIR -11 251 141 198 191 0 0 chr11 36920303 36920350 -111863122 + (TG)n Simple_repeat Simple_repeat 2 48 0 547 245 176 32 chr11 36920350 36920566 -111862906 + MIR SINE MIR 4 250 -12 541 263 181 17 chr11 36921150 36921443 -111862029 + L2 LINE L2 2534 2874 -440 614 161 153 0 chr11 36921516 36921653 -111861819 + MER3 DNA MER1_type 46 203 -6 651 333 96 15 chr11 36921661 36922067 -111861405 + L2 LINE L2 2874 3312 -1 480 286 51 17 chr11 36922142 36922317 -111861155 + MIR SINE MIR 81 261 -1 205 319 33 22 chr11 36923061 36923152 -111860320 - MIR3 SINE MIR -32 176 85 429 220 17 51 chr11 36924908 36925026 -111858446 + MER94 DNA DNA 8 121 -13 2092 120 17 3 chr11 36925330 36925629 -111857843 - AluSq SINE Alu -10 303 1 262 303 30 61 chr11 36926178 36926310 -111857162 - L3 LINE CR1 -114 1463 1336 413 308 52 12 chr11 36926393 36926565 -111856907 - MIR SINE MIR -63 199 21 325 283 0 47 chr11 36926595 36926701 -111856771 + MIR3 SINE MIR 81 181 -27 449 305 128 16 chr11 36927783 36927970 -111855502 + MIR SINE MIR 2 209 -53 493 280 14 14 chr11 36928553 36928696 -111854776 + MIR SINE MIR 117 259 -3 261 294 69 39 chr11 36928681 36928783 -111854689 - L2 LINE L2 -13 3259 3155 * 269 268 98 40 chr11 36928777 36928903 -111854569 - MIR SINE MIR -69 139 1 183 318 63 0 chr11 36929232 36929295 -111854177 - MIR SINE MIR -79 183 117 22 0 0 0 chr11 36929363 36929385 -111854087 + AT_rich Low_complexity Low_complexity 1 22 0 204 359 22 11 chr11 36930527 36930619 -111852853 - MIR3 SINE MIR -52 156 64 406 275 203 43 chr11 36931330 36931606 -111851866 - MER102b DNA MER1_type -15 326 7 541 248 30 8 chr11 36931889 36932022 -111851450 + MIR SINE MIR 116 251 -11 2119 102 3 3 chr11 36932564 36932859 -111850613 + AluSx SINE Alu 1 295 -17 1642 168 7 13 chr11 36933000 36933298 -111850174 - AluJb SINE Alu -16 296 1 763 263 24 64 chr11 36933578 36933829 -111849643 + MIR SINE MIR 22 262 0 413 289 68 32 chr11 36934684 36934933 -111848539 - MIR SINE MIR -4 258 1 248 250 282 19 chr11 36935847 36936003 -111847469 - MIR SINE MIR -19 243 47 227 291 73 0 chr11 36936591 36936646 -111846826 - L3 LINE CR1 -4 1573 1515 848 160 0 19 chr11 36936761 36936917 -111846555 - L1MB3 LINE L1 -1 6182 6030 1925 132 0 3 chr11 36936922 36937211 -111846261 - AluJb SINE Alu -21 291 4 1726 144 35 11 chr11 36937221 36937506 -111845966 - AluJb SINE Alu -20 292 1 669 206 132 74 chr11 36937523 36937763 -111845709 - MIR SINE MIR -10 252 8 225 154 0 0 chr11 36938150 36938189 -111845283 + (TG)n Simple_repeat Simple_repeat 2 40 0 250 322 203 0 chr11 36938659 36938777 -111844695 - MIR SINE MIR -11 251 110 706 235 111 0 chr11 36938847 36939009 -111844463 + MIR SINE MIR 78 257 -5 278 293 100 53 chr11 36939037 36939187 -111844285 - MIR SINE MIR -34 228 72 372 196 54 0 chr11 36939693 36939785 -111843687 - MIR SINE MIR -114 148 52 2128 168 0 0 chr11 36939901 36940264 -111843208 + L1PA16 LINE L1 5804 6166 0 1879 119 3 7 chr11 36940274 36940559 -111842913 - AluSx SINE Alu -17 295 12 22 0 0 0 chr11 36940571 36940593 -111842879 + AT_rich Low_complexity Low_complexity 1 22 0 181 30 91 0 chr11 36940753 36940786 -111842686 + (CATA)n Simple_repeat Simple_repeat 1 36 0 557 241 94 20 chr11 36940804 36941007 -111842465 + MER46C DNA MER2_type 121 338 0 281 333 51 26 chr11 36941042 36941198 -111842274 - MIR SINE MIR -34 228 69 183 278 74 19 chr11 36941555 36941609 -111841863 - MIR SINE MIR -165 97 41 529 201 77 48 chr11 36941642 36941851 -111841621 + MER113 DNA MER1_type? 1 215 -306 374 211 9 140 chr11 36941892 36941976 -111841496 + MER58 DNA MER1_type 1 68 -273 2242 106 0 3 chr11 36941976 36942288 -111841184 + AluSx SINE Alu 2 312 0 374 211 9 140 chr11 36942288 36942317 -111841155 + MER58 DNA MER1_type 68 99 -242 533 118 97 0 chr11 36942329 36942422 -111841050 + MER58 DNA MER1_type 2318 2419 -1 452 270 7 51 chr11 36942505 36942642 -111840830 - MIR SINE MIR -59 149 19 2042 110 7 0 chr11 36942804 36943110 -111840362 + AluSx SINE Alu 2 309 0 696 216 65 43 chr11 36944375 36944606 -111838866 + MER106A DNA MER1_type 1 236 0 221 200 0 0 chr11 36946300 36946340 -111837132 + MIR SINE MIR 108 147 -115 345 169 28 14 chr11 36946640 36946711 -111836761 + MIR3 SINE MIR 98 169 -39 336 303 16 25 chr11 36947945 36948067 -111835405 + MIR SINE MIR 2 122 -140 214 294 0 71 chr11 36948488 36948573 -111834899 + MIR3 SINE MIR 89 167 -41 196 292 139 14 chr11 36948766 36948838 -111834634 + L3 LINE CR1 1494 1574 -3 2248 92 0 0 chr11 36949037 36949329 -111834143 + AluSg SINE Alu 1 292 -18 821 279 5 0 chr11 36949858 36950055 -111833417 + MIR SINE MIR 5 202 -60 860 226 52 26 chr11 36950066 36950296 -111833176 - MIR SINE MIR -20 242 7 428 349 78 5 chr11 36950350 36950542 -111832930 - MIR SINE MIR -11 251 46 194 365 14 0 chr11 36951232 36951306 -111832166 + MIR SINE MIR 67 141 -121 864 214 11 103 chr11 36951467 36951748 -111831724 - MIR SINE MIR -1 261 7 226 69 0 0 chr11 36953152 36953181 -111830291 - HsTC2 DNA Tc2 -1837 61 33 193 375 0 10 chr11 36953353 36953449 -111830023 - L2 LINE L2 -174 3098 3004 739 234 34 11 chr11 36953491 36953666 -111829806 - MIR SINE MIR -83 179 1 1306 10 10 29 chr11 36954030 36954235 -111829237 + (TTTC)n Simple_repeat Simple_repeat 1 201 0 1816 157 7 0 chr11 36954264 36954563 -111828909 - AluSx SINE Alu -11 301 1 642 212 142 66 chr11 36955301 36955527 -111827945 + MIR SINE MIR 20 262 0 229 279 0 15 chr11 36959020 36959088 -111824384 - MIR SINE MIR -97 165 99 2348 80 0 0 chr11 36959315 36959617 -111823855 - AluY SINE Alu -9 302 1 693 215 20 0 chr11 36959718 36959867 -111823605 - MER103 DNA DNA -2 164 13 211 333 0 14 chr11 36959939 36960011 -111823461 + L2 LINE L2 3145 3215 -57 334 220 0 33 chr11 36960176 36960267 -111823205 + L2 LINE L2 2996 3083 -230 230 333 0 28 chr11 36960358 36960466 -111823006 + L2 LINE L2 3083 3187 -126 307 315 90 0 chr11 36960678 36960767 -111822705 + MER91A DNA MER1_type 90 186 -10 348 187 101 115 chr11 36960767 36960805 -111822667 + L2 LINE L2 3175 3212 -101 344 294 48 8 chr11 36960805 36960931 -111822541 + MER94 DNA DNA 3 133 -1 348 187 101 115 chr11 36960931 36961031 -111822441 + L2 LINE L2 3212 3311 -2 1674 184 0 7 chr11 36961229 36961534 -111821938 + AluSx SINE Alu 1 303 -9 375 279 70 28 chr11 36961823 36962024 -111821448 - L2 LINE L2 -1 3271 3005 2192 105 0 3 chr11 36962162 36962466 -111821006 - AluSq SINE Alu -10 303 1 667 101 0 0 chr11 36962484 36962583 -111820889 - L1PB1 LINE L1 0 6151 6053 304 298 11 0 chr11 36962888 36962982 -111820490 + MER117 DNA MER1_type 2 96 -101 183 156 0 0 chr11 36963009 36963041 -111820431 + (TG)n Simple_repeat Simple_repeat 1 32 0 263 211 0 0 chr11 36963581 36963633 -111819839 - L2 LINE L2 0 3313 3262 1598 216 86 36 chr11 36963717 36964193 -111819279 + MLT1D LTR MaLR 6 505 0 275 344 45 6 chr11 36964301 36964458 -111819014 - L1ME LINE L1 -255 5866 5704 1731 183 5 37 chr11 36965113 36965491 -111817981 + L1MB3 LINE L1 5817 6182 -1 635 228 117 17 chr11 36965619 36965799 -111817673 - MIR SINE MIR -44 218 21 507 289 106 14 chr11 36965803 36966011 -111817461 - MIR SINE MIR -11 251 25 1562 199 0 7 chr11 36966149 36966441 -111817031 - AluJo SINE Alu -22 290 1 387 377 82 0 chr11 36966599 36966758 -111816714 + L2 LINE L2 3101 3272 0 215 282 77 96 chr11 36966881 36966948 -111816524 - L2 LINE L2 -18 3295 3228 2023 127 3 16 chr11 36966948 36967264 -111816208 + AluSx SINE Alu 1 312 0 215 282 77 96 chr11 36967264 36967405 -111816067 - L2 LINE L2 -85 3228 3091 264 233 50 117 chr11 36967454 36967533 -111815939 + MIR SINE MIR 73 143 -119 1344 198 124 58 chr11 36967533 36967967 -111815505 + MLT1C LTR MaLR 5 467 0 264 233 50 117 chr11 36967967 36968007 -111815465 + MIR SINE MIR 143 184 -78 212 277 40 30 chr11 36968059 36968160 -111815312 - L2 LINE L2 -221 3092 2991 284 318 32 61 chr11 36968379 36968659 -111814813 + MLT1K LTR MaLR 159 430 -158 369 86 0 0 chr11 36968679 36968737 -111814735 + (GA)n Simple_repeat Simple_repeat 1 58 0 924 158 61 6 chr11 36968738 36968903 -111814569 - MLT1A2 LTR MaLR -200 174 1 336 207 0 0 chr11 36969040 36969098 -111814374 + L2 LINE L2 3254 3311 -2 754 240 42 42 chr11 36969230 36969447 -111814025 - L2 LINE L2 -3 3310 3094 2282 71 7 3 chr11 36969501 36969795 -111813677 + AluY SINE Alu 1 295 -16 486 299 22 15 chr11 36969940 36970074 -111813398 + L2 LINE L2 3138 3272 0 1999 98 14 0 chr11 36970306 36970583 -111812889 - AluSc SINE Alu 0 309 29 1017 242 90 28 chr11 36970583 36971035 -111812437 + MLT1K LTR MaLR 6 523 -65 1377 22 11 6 chr11 36971035 36971213 -111812259 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1017 242 90 28 chr11 36971213 36971282 -111812190 + MLT1K LTR MaLR 523 586 -2 254 131 16 98 chr11 36972053 36972114 -111811358 + MADE1 DNA Mariner 25 80 0 369 224 40 92 chr11 36972139 36972291 -111811181 + L2 LINE L2 2928 3071 -201 575 329 66 21 chr11 36972534 36972777 -111810695 + MIR SINE MIR 9 262 0 225 250 0 0 chr11 36972904 36972956 -111810516 - L2 LINE L2 0 3313 3262 477 0 0 0 chr11 36973280 36973333 -111810139 + (CA)n Simple_repeat Simple_repeat 2 54 0 330 262 37 19 chr11 36973813 36973920 -111809552 - MER20B DNA MER1_type -673 110 2 226 325 25 50 chr11 36973982 36974102 -111809370 + L2 LINE L2 3184 3300 -13 199 325 84 0 chr11 36974938 36975021 -111808451 + MIR3 SINE MIR 93 182 -26 557 281 69 39 chr11 36975442 36975645 -111807827 + MIR SINE MIR 35 243 -19 460 229 100 116 chr11 36975999 36976309 -111807163 + L2 LINE L2 3008 3312 -1 731 169 18 54 chr11 36977244 36977410 -111806062 + MIR SINE MIR 103 262 0 2423 117 20 3 chr11 36977497 36977849 -111805623 + L1PA15 LINE L1 5803 6160 -5 1837 147 3 0 chr11 36978281 36978573 -111804899 - AluSx SINE Alu -6 306 14 887 319 23 21 chr11 36978700 36979135 -111804337 - L2 LINE L2 -822 2492 2057 2145 125 6 10 chr11 36979442 36979755 -111803717 + AluSx SINE Alu 1 312 0 192 274 81 0 chr11 36979866 36979928 -111803544 - L2 LINE L2 -36 3277 3211 860 165 40 28 chr11 36979935 36980111 -111803361 + MER5B DNA MER1_type 1 178 0 198 264 209 9 chr11 36980179 36980289 -111803183 - MIR3 SINE MIR -53 155 24 267 262 187 0 chr11 36980663 36980770 -111802702 + MIR SINE MIR 81 207 -55 394 328 25 44 chr11 36980774 36980978 -111802494 - MIR SINE MIR -20 242 43 415 292 31 37 chr11 36981213 36981374 -111802098 - MIR SINE MIR -71 191 32 569 285 10 48 chr11 36981623 36981805 -111801667 - MIR SINE MIR -21 241 66 1565 193 13 10 chr11 36981805 36982110 -111801362 - AluJb SINE Alu -6 306 1 569 285 10 48 chr11 36982110 36982134 -111801338 - MIR SINE MIR -196 66 43 391 235 109 17 chr11 36982639 36982758 -111800714 - MIR SINE MIR -122 140 11 327 320 134 43 chr11 36983445 36983817 -111799655 + LTR67 LTR ERVL 36 441 -116 9754 192 66 64 chr11 36983832 36986955 -111796517 - L1MDa LINE L1 -3383 3157 19 356 238 24 0 chr11 36986955 36987039 -111796433 + LTR67 LTR ERVL 471 556 -1 226 220 0 0 chr11 36987270 36987329 -111796143 - L1ME4a LINE L1 -3 6118 6060 1931 175 6 6 chr11 36987419 36987751 -111795721 - MER47A DNA MER2_type 0 366 35 22 0 0 0 chr11 36988109 36988131 -111795341 + AT_rich Low_complexity Low_complexity 1 22 0 351 191 21 53 chr11 36988266 36988360 -111795112 - L1MB4 LINE L1 -218 5962 5872 219 380 72 36 chr11 36988378 36988573 -111794899 + MIR3 SINE MIR 3 204 -4 308 280 13 0 chr11 36988668 36988743 -111794729 - L2 LINE L2 -43 3229 3154 270 292 58 50 chr11 36989292 36989412 -111794060 - MIR SINE MIR -122 140 20 2024 116 3 7 chr11 36989456 36989750 -111793722 - AluY SINE Alu -18 293 1 22 35 0 0 chr11 36989760 36989789 -111793683 + AT_rich Low_complexity Low_complexity 1 29 0 816 199 0 0 chr11 36989845 36989976 -111793496 - FLAM_C SINE Alu -10 133 3 569 269 70 76 chr11 36990024 36990366 -111793106 - L1MEd LINE L1 -4885 1234 895 593 194 26 65 chr11 36990545 36990700 -111792772 - MER53 DNA DNA -13 176 28 495 301 143 29 chr11 36990759 36991031 -111792441 - L1MEd LINE L1 -5406 713 411 677 68 0 0 chr11 36991138 36991226 -111792246 - Tigger3(Golem) DNA MER2_type -653 2376 2289 3765 147 41 23 chr11 36991228 36991807 -111791665 - L1MA4 LINE L1 -366 5934 5367 198 0 0 0 chr11 36991817 36991839 -111791633 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 3136 88 7 7 chr11 36991839 36992239 -111791233 - L1PA10 LINE L1 -17 6151 5749 3765 147 41 23 chr11 36992239 36992905 -111790567 - L1MA4 LINE L1 -933 5367 4666 235 156 22 0 chr11 36992905 36992950 -111790522 - MIR SINE MIR -72 190 145 22 35 0 0 chr11 36994045 36994074 -111789398 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 36994155 36994176 -111789296 + AT_rich Low_complexity Low_complexity 1 21 0 240 170 224 0 chr11 36996001 36996059 -111787413 + MIR SINE MIR 88 159 -49 818 244 48 35 chr11 36996205 36996516 -111786956 - L1ME4a LINE L1 -223 5898 5584 546 331 50 0 chr11 36997156 36997316 -111786156 + MER91A DNA MER1_type 2 169 -27 225 311 91 30 chr11 36997725 36997857 -111785615 - MIR3 SINE MIR -31 177 38 2496 53 3 0 chr11 36997869 36998168 -111785304 - AluY SINE Alu -11 300 1 288 299 0 0 chr11 36998600 36998677 -111784795 - MIR SINE MIR -100 162 86 388 324 27 7 chr11 36999013 36999161 -111784311 + MIR3 SINE MIR 17 167 -41 285 174 130 54 chr11 36999372 36999464 -111784008 - LTR33A LTR ERVL -4 519 421 603 292 97 45 chr11 36999822 37000206 -111783266 - MLT1I LTR MaLR 0 409 38 784 192 0 0 chr11 37001736 37001866 -111781606 + FLAM_A SINE Alu 4 133 0 188 205 26 0 chr11 37002058 37002097 -111781375 + L2 LINE L2 3269 3308 -5 207 0 0 0 chr11 37002242 37002265 -111781207 + (TG)n Simple_repeat Simple_repeat 2 24 0 1940 141 4 0 chr11 37002265 37002542 -111780930 - AluSx SINE Alu -34 278 1 406 274 95 12 chr11 37002646 37002814 -111780658 + MIR SINE MIR 58 239 -23 478 251 65 6 chr11 37003456 37003638 -111779834 + MIR SINE MIR 22 212 -50 225 0 0 0 chr11 37003688 37003713 -111779759 + (A)n Simple_repeat Simple_repeat 1 25 0 1629 64 10 0 chr11 37003942 37004145 -111779327 + L1PB1 LINE L1 5945 6149 -2 354 315 51 28 chr11 37004223 37004401 -111779071 + MIR SINE MIR 79 260 -2 300 264 218 0 chr11 37004744 37004854 -111778618 - L2 LINE L2 0 3272 3139 354 224 129 54 chr11 37004941 37005088 -111778384 + MIR3 SINE MIR 33 190 -18 602 272 11 17 chr11 37005735 37005915 -111777557 - LTR33 LTR ERVL -240 281 103 192 368 0 0 chr11 37006305 37006381 -111777091 - MIR SINE MIR -7 255 180 545 239 0 0 chr11 37007580 37007689 -111775783 - L2 LINE L2 0 3313 3205 236 275 154 0 chr11 37007689 37007780 -111775692 + MER91C DNA MER1_type 1 105 -35 346 298 48 8 chr11 37007832 37007956 -111775516 - MIR SINE MIR -92 170 42 263 269 15 0 chr11 37010887 37010954 -111772518 + MIR SINE MIR 86 153 -109 415 249 133 93 chr11 37011111 37011253 -111772219 - L1ME4a LINE L1 -30 6091 5956 1687 161 44 3 chr11 37011253 37011551 -111771921 - L1MB3 LINE L1 -1 6182 5873 415 249 133 93 chr11 37011551 37011673 -111771799 - L1ME4a LINE L1 -165 5956 5840 2249 112 7 0 chr11 37011673 37011969 -111771503 - AluSx SINE Alu -14 298 1 415 249 133 93 chr11 37011969 37012200 -111771272 - L1ME4a LINE L1 -281 5840 5575 180 274 145 0 chr11 37012549 37012611 -111770861 + L3 LINE CR1 1505 1575 -2 2355 86 0 43 chr11 37013432 37013757 -111769715 + AluSx SINE Alu 1 311 -1 29 28 0 0 chr11 37014148 37014184 -111769288 + AT_rich Low_complexity Low_complexity 1 36 0 425 315 59 5 chr11 37014196 37014399 -111769073 - L1MC5 LINE L1 -60 7901 7688 1697 151 28 47 chr11 37014802 37015119 -111768353 - AluSq SINE Alu -2 311 1 408 207 69 86 chr11 37015119 37015293 -111768179 - Charlie7 DNA MER1_type -8 2604 2434 253 194 15 30 chr11 37015280 37015347 -111768125 - Charlie7 DNA MER1_type -2512 100 35 * 535 308 76 0 chr11 37015382 37015554 -111767918 + MIR SINE MIR 1 185 -77 756 168 0 98 chr11 37017076 37017219 -111766253 - FLAM_C SINE Alu -4 129 1 2509 174 0 18 chr11 37017703 37018139 -111765333 + L1MB5 LINE L1 5747 6174 0 232 142 57 132 chr11 37018147 37018253 -111765219 + HAL1 LINE L1 100 197 -2310 2424 263 136 55 chr11 37018568 37020266 -111763206 + HAL1 LINE L1 592 2425 -82 523 255 88 57 chr11 37020270 37020462 -111763010 - MIR SINE MIR -62 200 3 3757 131 35 13 chr11 37020595 37021197 -111762275 + L1MB3 LINE L1 5370 5984 -199 1101 253 129 82 chr11 37021294 37022107 -111761365 - HAL1 LINE L1 -2 2505 1655 279 277 177 7 chr11 37022467 37022608 -111760864 - MIR SINE MIR -6 256 92 663 260 117 87 chr11 37022610 37023079 -111760393 - L2 LINE L2 -3 3310 2828 193 250 47 31 chr11 37023218 37023282 -111760190 - MIR SINE MIR -126 82 18 4036 191 29 27 chr11 37024351 37024787 -111758685 + MER63C DNA MER1_type 83 523 -537 933 223 13 44 chr11 37024787 37025016 -111758456 + MER58A DNA MER1_type 3 224 0 4036 191 29 27 chr11 37025016 37025401 -111758071 + MER63C DNA MER1_type 523 906 -24 271 323 47 8 chr11 37026427 37026554 -111756918 - L2 LINE L2 -9 3304 3173 * 1737 241 226 13 chr11 37026541 37027223 -111756249 - L2 LINE L2 -412 2902 2076 449 294 65 7 chr11 37027639 37027792 -111755680 + MIR SINE MIR 53 214 -48 197 329 41 14 chr11 37028548 37028621 -111754851 + MIR3 SINE MIR 111 185 -23 281 253 74 11 chr11 37029169 37029264 -111754208 - MIR3 SINE MIR -11 197 97 183 42 0 0 chr11 37029548 37029572 -111753900 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 740 300 36 4 chr11 37029591 37029844 -111753628 - MIR SINE MIR 0 262 2 181 368 0 0 chr11 37030193 37030269 -111753203 - MIR SINE MIR -16 246 171 839 266 16 18 chr11 37030456 37030705 -111752767 + MIR SINE MIR 4 248 -14 2043 90 30 8 chr11 37031573 37031841 -111751631 - AluY SINE Alu -13 298 25 282 227 86 23 chr11 37031901 37032029 -111751443 - L1ME4a LINE L1 0 6515 6380 * 701 276 96 27 chr11 37032028 37032419 -111751053 - L1ME4a LINE L1 -948 5592 5181 259 279 84 45 chr11 37032601 37032780 -111750692 - MLT1J1 LTR MaLR -230 216 31 2610 302 48 19 chr11 37032806 37034239 -111749233 - L1ME4a LINE L1 -1347 5193 3719 882 184 5 38 chr11 37034258 37034470 -111749002 - L1MA7 LINE L1 -2 6289 6085 361 221 0 39 chr11 37034472 37034548 -111748924 + Tigger5 DNA MER2_type 6 78 -2245 368 167 0 0 chr11 37034548 37034608 -111748864 - Tigger5 DNA MER2_type -3 2320 2261 3217 165 25 7 chr11 37034655 37035226 -111748246 - L1MA7 LINE L1 -202 6089 5509 414 271 62 13 chr11 37035226 37035451 -111748021 - L1ME4a LINE L1 -2837 3703 3468 * 543 240 72 25 chr11 37035448 37035709 -111747763 - L1MDa LINE L1 -4974 1556 1276 1144 270 51 36 chr11 37036134 37036601 -111746871 + L2 LINE L2 2827 3300 -13 461 296 25 20 chr11 37036604 37036800 -111746672 - MIR SINE MIR -35 227 31 321 280 117 37 chr11 37037643 37037857 -111745615 + MIR SINE MIR 20 250 -12 228 262 41 57 chr11 37038113 37038187 -111745285 - MER5A DNA MER1_type -69 120 47 1882 192 28 3 chr11 37038187 37038541 -111744931 + MLT1A1 LTR MaLR 1 363 -2 228 262 41 57 chr11 37038541 37038588 -111744884 - MER5A DNA MER1_type -142 47 1 192 266 31 0 chr11 37038865 37038929 -111744543 + MIR SINE MIR 79 144 -64 671 258 80 15 chr11 37038964 37039288 -111744184 - LTR33A LTR ERVL -2 521 139 213 322 41 16 chr11 37039297 37039418 -111744054 + MIR3 SINE MIR 78 201 -7 229 250 105 53 chr11 37040318 37040470 -111743002 + MER5A DNA MER1_type 2 161 -28 744 260 100 51 chr11 37040559 37040919 -111742553 - L1ME LINE L1 -390 5780 5398 2511 90 0 0 chr11 37040919 37041229 -111742243 - AluSq SINE Alu -3 310 1 744 260 100 51 chr11 37041229 37041257 -111742215 - L1ME LINE L1 -772 5398 5373 243 139 0 0 chr11 37041891 37041927 -111741545 - U2 snRNA snRNA -152 36 1 704 278 9 48 chr11 37043898 37044128 -111739344 - MIR SINE MIR -19 243 23 264 307 183 0 chr11 37044154 37044291 -111739181 + MER5A DNA MER1_type 28 189 0 966 117 394 0 chr11 37044339 37044552 -111738920 - L1PA11 LINE L1 0 6174 5878 392 326 8 0 chr11 37044687 37044819 -111738653 + MIR SINE MIR 17 149 -59 542 324 21 29 chr11 37045421 37045659 -111737813 - MIR SINE MIR -13 249 14 271 245 77 49 chr11 37045746 37045889 -111737583 - MER5B DNA MER1_type -6 172 26 1799 164 10 10 chr11 37046239 37046532 -111736940 + AluSx SINE Alu 1 293 -19 504 249 41 22 chr11 37046666 37047030 -111736442 + MER113 DNA MER1_type? 45 475 -46 402 194 23 132 chr11 37047060 37047189 -111736283 + L2 LINE L2 3189 3303 -10 198 71 0 0 chr11 37047751 37047779 -111735693 + (TAA)n Simple_repeat Simple_repeat 1 28 0 270 338 66 10 chr11 37048515 37048713 -111734759 - L2 LINE L2 -390 2924 2716 341 238 10 20 chr11 37049168 37049269 -111734203 + MIR SINE MIR 46 145 -63 211 220 0 0 chr11 37049457 37049507 -111733965 + (TA)n Simple_repeat Simple_repeat 2 51 0 702 289 189 3 chr11 37049617 37049967 -111733505 - L1MC4a LINE L1 -1884 5924 5510 2028 142 0 0 chr11 37050008 37050296 -111733176 - AluSx SINE Alu -22 290 3 2350 101 3 0 chr11 37050306 37050604 -111732868 - AluSp SINE Alu -14 299 1 393 289 21 59 chr11 37051509 37051696 -111731776 - MIR SINE MIR -51 211 32 534 281 65 10 chr11 37052556 37052755 -111730717 + MIR SINE MIR 49 258 -4 353 231 164 0 chr11 37052785 37052889 -111730583 - MIR SINE MIR -113 149 29 557 226 172 10 chr11 37053256 37053460 -111730012 + MIR SINE MIR 12 248 -14 366 238 89 0 chr11 37053752 37053853 -111729619 - MIR SINE MIR -74 188 79 545 192 96 0 chr11 37053896 37054000 -111729472 + MER81 DNA DNA 1 114 0 264 313 80 0 chr11 37054323 37054435 -111729037 + L2 LINE L2 3186 3306 -7 362 224 48 16 chr11 37054751 37054876 -111728596 + MER113 DNA MER1_type? 6 134 -387 202 179 36 18 chr11 37055194 37055250 -111728222 + CT-rich Low_complexity Low_complexity 1 57 0 523 304 19 39 chr11 37057159 37057416 -111726056 + MIR SINE MIR 11 262 0 2370 98 6 13 chr11 37057483 37057798 -111725674 - AluSq SINE Alu 0 313 1 297 285 66 0 chr11 37057915 37058052 -111725420 - MIR SINE MIR -6 256 111 188 265 108 48 chr11 37058434 37058517 -111724955 - MER5A DNA MER1_type -68 121 34 987 121 55 55 chr11 37058718 37058871 -111724601 + L1MA8 LINE L1 6064 6219 -72 243 0 0 0 chr11 37058871 37058898 -111724574 + (TG)n Simple_repeat Simple_repeat 2 28 0 987 121 55 55 chr11 37058898 37058943 -111724529 + L1MA8 LINE L1 6218 6262 -29 313 175 0 25 chr11 37058931 37059011 -111724461 + L1MA8 LINE L1 6213 6290 -1 * 218 189 0 0 chr11 37059473 37059510 -111723962 + (TG)n Simple_repeat Simple_repeat 2 38 0 586 0 27 0 chr11 37060869 37060943 -111722529 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 2068 129 14 0 chr11 37065376 37065670 -111717802 - AluSx SINE Alu -14 298 1 313 253 140 27 chr11 37067146 37067296 -111716176 + MIR3 SINE MIR 30 196 -12 599 245 46 15 chr11 37069076 37069272 -111714200 + MIR SINE MIR 17 218 -44 306 0 0 0 chr11 37069397 37069431 -111714041 + (TG)n Simple_repeat Simple_repeat 1 34 0 1073 212 108 19 chr11 37069974 37070280 -111713192 + Charlie4a DNA MER1_type 1 333 -175 485 116 0 70 chr11 37070280 37070337 -111713135 - MADE1 DNA Mariner 0 80 29 1489 113 52 9 chr11 37070337 37070549 -111712923 + AluSg/x SINE Alu 83 303 -7 485 116 0 70 chr11 37070549 37070577 -111712895 - MADE1 DNA Mariner -51 29 1 * 563 203 55 39 chr11 37070577 37070753 -111712719 + Charlie4a DNA MER1_type 329 507 -1 201 284 59 39 chr11 37070917 37071019 -111712453 - MIR SINE MIR 0 262 159 1017 211 0 0 chr11 37071115 37071290 -111712182 + MER45A DNA AcHobo 4 178 0 507 246 123 0 chr11 37072570 37072741 -111710731 + MIR SINE MIR 70 261 -1 2130 141 0 3 chr11 37073317 37073622 -111709850 - AluSx SINE Alu -8 304 1 413 243 18 36 chr11 37075077 37075188 -111708284 + L2 LINE L2 3156 3264 -8 189 250 0 0 chr11 37077012 37077072 -111706400 + (TA)n Simple_repeat Simple_repeat 1 60 0 562 258 78 46 chr11 37077214 37077431 -111706041 + MIR SINE MIR 38 261 -1 1091 88 0 0 chr11 37077739 37077876 -111705596 - AluSp/q SINE Alu -8 305 169 712 271 57 28 chr11 37078447 37078694 -111704778 - MIR SINE MIR -1 261 8 393 309 82 47 chr11 37078778 37079011 -111704461 - MIR SINE MIR -2 260 20 2491 67 13 0 chr11 37079043 37079342 -111704130 + AluSp SINE Alu 1 303 -10 2454 86 0 0 chr11 37080191 37080494 -111702978 - AluSx SINE Alu -9 303 1 284 251 230 21 chr11 37080674 37080865 -111702607 - MIR SINE MIR -30 232 2 626 165 63 0 chr11 37080899 37081026 -111702446 + MER20 DNA MER1_type 85 219 0 331 253 73 49 chr11 37081377 37081511 -111701961 - MIR SINE MIR -54 154 9 412 313 59 74 chr11 37082298 37082554 -111700918 - MIR SINE MIR -9 253 2 220 153 106 71 chr11 37083017 37083102 -111700370 - MIR3 SINE MIR -7 201 114 576 241 94 49 chr11 37083150 37083374 -111700098 - MIR SINE MIR -1 261 28 409 195 24 0 chr11 37083578 37083660 -111699812 + L2 LINE L2 3230 3313 0 303 93 0 0 chr11 37085358 37085401 -111698071 + (TG)n Simple_repeat Simple_repeat 1 43 0 501 216 216 0 chr11 37087075 37087209 -111696263 + MER5A DNA MER1_type 27 189 0 303 28 0 0 chr11 37088320 37088356 -111695116 + (TG)n Simple_repeat Simple_repeat 2 37 0 232 174 22 0 chr11 37088359 37088405 -111695067 + GA-rich Low_complexity Low_complexity 2 48 0 212 77 26 0 chr11 37089331 37089370 -111694102 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 445 195 195 0 chr11 37090426 37090554 -111692918 - MIR SINE MIR -6 256 104 210 118 0 0 chr11 37090630 37090664 -111692808 + (TA)n Simple_repeat Simple_repeat 2 35 0 400 257 28 76 chr11 37090879 37091023 -111692449 - MIR3 SINE MIR -11 197 61 27 29 0 0 chr11 37093400 37093434 -111690038 + AT_rich Low_complexity Low_complexity 1 34 0 219 103 0 0 chr11 37095424 37095463 -111688009 + (TTCC)n Simple_repeat Simple_repeat 1 39 0 238 367 0 0 chr11 37095674 37095753 -111687719 - L3 LINE CR1 -107 1470 1392 1095 231 12 8 chr11 37097756 37097998 -111685474 + MIR SINE MIR 6 248 -14 396 71 0 0 chr11 37098319 37098375 -111685097 + (CA)n Simple_repeat Simple_repeat 2 57 0 564 267 218 16 chr11 37098684 37099106 -111684366 + L2 LINE L2 2731 3313 0 1984 138 0 0 chr11 37099790 37100066 -111683406 + AluJb SINE Alu 21 296 -16 549 296 6 45 chr11 37100490 37100666 -111682806 + MIR3 SINE MIR 40 208 0 1154 156 52 28 chr11 37102054 37102266 -111681206 - MER20 DNA MER1_type 0 219 3 389 297 110 0 chr11 37104334 37104452 -111679020 + L2 LINE L2 3142 3272 0 222 200 0 0 chr11 37104998 37105038 -111678434 - L2 LINE L2 -9 3263 3224 908 307 101 20 chr11 37105645 37106258 -111677214 - L2 LINE L2 -5 3308 2654 494 284 34 25 chr11 37106436 37106640 -111676832 - MIR SINE MIR 0 262 57 201 74 0 0 chr11 37106735 37106762 -111676710 + (CA)n Simple_repeat Simple_repeat 2 28 0 569 219 8 0 chr11 37106775 37106894 -111676578 + MER103 DNA DNA 44 163 -3 845 203 16 6 chr11 37107224 37107406 -111676066 - MER3 DNA MER1_type -25 184 1 325 328 41 8 chr11 37107969 37108091 -111675381 + L2 LINE L2 2910 3035 -278 1034 118 0 0 chr11 37108209 37108353 -111675119 + LTR8 LTR ERV1 443 586 -105 198 395 18 9 chr11 37108388 37108502 -111674970 + L2 LINE L2 3145 3259 -13 273 29 0 0 chr11 37108504 37108538 -111674934 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 282 326 121 0 chr11 37108837 37108969 -111674503 + MIR SINE MIR 40 187 -75 2232 95 3 36 chr11 37109002 37109307 -111674165 - AluSp SINE Alu -17 296 2 398 293 160 24 chr11 37109324 37109536 -111673936 - MIR SINE MIR -21 241 1 275 130 19 0 chr11 37110294 37110348 -111673124 + (TG)n Simple_repeat Simple_repeat 2 56 0 1637 197 3 16 chr11 37111074 37111389 -111672083 - AluJo SINE Alu -1 311 1 409 275 35 42 chr11 37111419 37111564 -111671908 + MIR SINE MIR 1 151 -57 327 303 34 57 chr11 37111648 37111823 -111671649 + MIR3 SINE MIR 35 205 -3 446 258 197 34 chr11 37112122 37112300 -111671172 - MIR SINE MIR -8 254 48 244 224 138 46 chr11 37112786 37112938 -111670534 - HAL1b LINE L1 -5 1343 1178 907 267 89 35 chr11 37113043 37113560 -111669912 - HAL1b LINE L1 -187 1161 617 606 325 30 63 chr11 37113640 37114067 -111669405 + MLT1K LTR MaLR 103 515 -73 601 311 80 26 chr11 37115071 37115910 -111667562 + L1ME LINE L1 676 1558 -4522 938 229 18 0 chr11 37116430 37116600 -111666872 - FAM SINE Alu -1 174 2 492 160 47 38 chr11 37116710 37116816 -111666656 - L1MA8 LINE L1 -275 6016 5910 * 4567 162 43 7 chr11 37116814 37117927 -111665545 - L1MA8 LINE L1 -666 5625 4472 300 27 0 0 chr11 37118684 37118721 -111664751 + (TG)n Simple_repeat Simple_repeat 2 38 0 463 302 130 12 chr11 37118942 37119111 -111664361 + MIR SINE MIR 1 189 -73 443 281 16 0 chr11 37119115 37119236 -111664236 - L2 LINE L2 -2 3311 3189 277 148 56 0 chr11 37119237 37119291 -111664181 + MIR SINE MIR 194 250 -12 2119 219 72 41 chr11 37119478 37119994 -111663478 + MLT1F LTR MaLR 9 540 -2 2474 82 5 123 chr11 37120137 37120550 -111662922 + THE1B LTR MaLR 1 364 0 189 147 0 0 chr11 37121194 37121228 -111662244 + (TG)n Simple_repeat Simple_repeat 1 34 0 219 364 11 11 chr11 37121604 37121692 -111661780 - MIR SINE MIR -147 115 28 680 299 45 5 chr11 37122235 37122436 -111661036 + MIR SINE MIR 2 210 -52 428 277 0 0 chr11 37122440 37122541 -111660931 - MIR SINE MIR -6 256 156 510 266 149 16 chr11 37123058 37123246 -111660226 - MIR SINE MIR -10 252 40 22 35 0 0 chr11 37124520 37124549 -111658923 + AT_rich Low_complexity Low_complexity 1 29 0 258 256 44 0 chr11 37124644 37124734 -111658738 - L1ME4a LINE L1 -188 5933 5840 601 313 31 40 chr11 37124750 37124980 -111658492 - MIR SINE MIR -3 259 34 468 219 9 0 chr11 37125001 37125106 -111658366 + HsTC2 DNA Tc2 1790 1895 -3 241 45 23 23 chr11 37126037 37126081 -111657391 + (TA)n Simple_repeat Simple_repeat 1 44 0 230 336 46 0 chr11 37126387 37126518 -111656954 - L1ME4a LINE L1 -796 5548 5412 1355 87 34 10 chr11 37126518 37126725 -111656747 + L1MA8 LINE L1 6075 6286 -5 296 253 39 71 chr11 37126972 37127243 -111656229 - L1ME4a LINE L1 -952 5194 4941 312 48 0 0 chr11 37128015 37128057 -111655415 + (CA)n Simple_repeat Simple_repeat 1 42 0 824 308 128 9 chr11 37128529 37128983 -111654489 - L1ME LINE L1 -361 5870 5363 378 143 45 0 chr11 37128986 37129119 -111654353 + (TA)n Simple_repeat Simple_repeat 2 140 0 243 0 0 0 chr11 37129187 37129214 -111654258 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 354 162 9 171 chr11 37129227 37129338 -111654134 + MLT1A2 LTR MaLR 1 93 -281 960 91 8 0 chr11 37129357 37129489 -111653983 - L1PB1 LINE L1 -1 6150 6018 22746 49 40 6 chr11 37129489 37135351 -111648121 - L1PA2 LINE L1 -3 6152 12 327 303 59 53 chr11 37135348 37135860 -111647612 - L1ME LINE L1 -855 5360 4846 * 928 300 68 29 chr11 37135927 37136747 -111646725 - L1ME LINE L1 -1499 4716 3865 8109 168 36 13 chr11 37136782 37138549 -111644923 - L1 LINE L1 -1185 4961 3155 3165 132 0 34 chr11 37138551 37139081 -111644391 - L1PA15 LINE L1 -15 6150 5639 825 306 78 42 chr11 37139578 37139961 -111643511 + LTR16A1 LTR ERVL 61 457 0 24 32 0 0 chr11 37140244 37140275 -111643197 + AT_rich Low_complexity Low_complexity 1 31 0 2049 127 0 3 chr11 37140455 37140746 -111642726 - AluSg SINE Alu -20 290 1 1010 248 37 35 chr11 37140799 37141234 -111642238 - L1ME LINE L1 -2329 3886 3451 1833 90 27 0 chr11 37141244 37141500 -111641972 + L1PB1 LINE L1 5884 6146 -5 28 0 0 0 chr11 37141500 37141528 -111641944 + AT_rich Low_complexity Low_complexity 1 28 0 1659 199 0 7 chr11 37141530 37141821 -111641651 + AluJb SINE Alu 3 291 -21 240 88 53 0 chr11 37141828 37141885 -111641587 + (TA)n Simple_repeat Simple_repeat 1 60 0 6640 134 12 4 chr11 37142008 37143736 -111639736 - L1MA2 LINE L1 -5 7718 5977 5785 188 151 13 chr11 37143736 37145242 -111638230 + MER52A LTR ERV1 1 1755 0 9809 180 61 13 chr11 37145243 37150273 -111633199 - L1MA2 LINE L1 -1586 5979 19 2454 221 45 35 chr11 37150290 37151294 -111632178 - L1MEc LINE L1 -2868 3347 2368 2192 122 3 0 chr11 37151294 37151588 -111631884 - AluSq SINE Alu -18 295 1 2454 221 45 35 chr11 37151588 37151641 -111631831 - L1MEc LINE L1 -3847 2368 2317 520 239 22 25 chr11 37152326 37152555 -111630917 - L1MEc LINE L1 -3921 2322 2070 1585 291 79 20 chr11 37152650 37153887 -111629585 - L1MEc LINE L1 -4462 1934 625 1794 168 139 13 chr11 37154116 37154496 -111628976 + MSTA LTR MaLR 1 428 0 9178 135 4 39 chr11 37154502 37156126 -111627346 + MSTA-int LTR MaLR 6 1573 -7 1646 184 149 11 chr11 37156132 37156508 -111626964 + MSTA LTR MaLR 1 428 0 402 366 44 7 chr11 37156534 37156832 -111626640 - L1MEc LINE L1 -6013 383 75 218 315 0 0 chr11 37156867 37156921 -111626551 - MER5B DNA MER1_type -123 55 2 225 0 0 0 chr11 37157381 37157406 -111626066 + (TTG)n Simple_repeat Simple_repeat 3 27 0 710 273 64 29 chr11 37157506 37157817 -111625655 + MER102b DNA MER1_type 11 332 -9 1527 249 48 11 chr11 37158354 37158965 -111624507 + L1ME2 LINE L1 4156 4788 -1358 2121 172 26 28 chr11 37158967 37159426 -111624046 - MLT1C LTR MaLR -2 465 8 545 223 12 42 chr11 37159433 37159599 -111623873 + L1ME2 LINE L1 4784 4944 -1202 1012 255 61 65 chr11 37159601 37160076 -111623396 + L1ME2 LINE L1 5671 6143 -21 3924 251 114 43 chr11 37160379 37162241 -111621231 - L2 LINE L2 -2 3311 1330 464 244 46 0 chr11 37162494 37162625 -111620847 - L1ME LINE L1 -400 5721 5585 1904 264 73 27 chr11 37162962 37163549 -111619923 + MER115 DNA AcHobo 57 670 -23 206 287 219 56 chr11 37163994 37164297 -111619175 - L2 LINE L2 -76 3196 2848 268 307 34 74 chr11 37164311 37164606 -111618866 + L2 LINE L2 2920 3307 -6 2552 59 0 0 chr11 37164608 37164912 -111618560 + AluY SINE Alu 1 304 -7 211 189 0 0 chr11 37164923 37164960 -111618512 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 294 349 54 108 chr11 37165106 37165421 -111618051 - L2 LINE L2 -9 3263 2966 2697 87 0 3 chr11 37165598 37165954 -111617518 - THE1A LTR MaLR 0 355 1 720 315 116 43 chr11 37166083 37166998 -111616474 + L1MEd LINE L1 268 1249 -4870 364 304 72 58 chr11 37167029 37167236 -111616236 + HAL1 LINE L1 1397 1606 -901 1335 249 31 0 chr11 37167254 37167571 -111615901 + L1M4b LINE L1 2 328 -6531 907 145 12 29 chr11 37167572 37167744 -111615728 + MLT1D LTR MaLR 1 169 -336 808 258 72 31 chr11 37167782 37168295 -111615177 + L1ME LINE L1 5165 5702 -468 661 304 96 5 chr11 37168413 37168633 -111614839 + MIR SINE MIR 23 262 0 340 316 80 59 chr11 37168824 37169011 -111614461 + MIR SINE MIR 8 198 -64 322 268 12 89 chr11 37169455 37169623 -111613849 - MIR SINE MIR -43 219 65 5549 183 23 15 chr11 37170035 37172181 -111611291 - L1PA16 LINE L1 0 6166 4004 3482 180 11 10 chr11 37172184 37172967 -111610505 + L1PA16 LINE L1 3242 4025 -2121 370 178 22 0 chr11 37173882 37173972 -111609500 + (TG)n Simple_repeat Simple_repeat 1 92 0 222 37 0 0 chr11 37175261 37175288 -111608184 + (CA)n Simple_repeat Simple_repeat 2 28 0 2411 95 0 0 chr11 37175438 37175743 -111607729 + AluY SINE Alu 1 305 -6 697 215 44 57 chr11 37176108 37176326 -111607146 - MIR SINE MIR -46 216 3 237 156 31 16 chr11 37176616 37176680 -111606792 + (TA)n Simple_repeat Simple_repeat 1 65 0 2277 189 99 32 chr11 37176694 37176905 -111606567 + MLT1E2 LTR MaLR 2 198 -428 1725 117 4 0 chr11 37176905 37177136 -111606336 + AluSg/x SINE Alu 69 300 -10 2277 189 99 32 chr11 37177136 37177510 -111605962 + MLT1E2 LTR MaLR 198 626 0 354 279 50 38 chr11 37177802 37178113 -111605359 + MLT1I LTR MaLR 46 407 -2 462 313 45 8 chr11 37178401 37178535 -111604937 - MIR SINE MIR -95 167 29 182 105 26 53 chr11 37178839 37178877 -111604595 - L2 LINE L2 -685 2629 2593 279 281 158 26 chr11 37179398 37179512 -111603960 + MIR SINE MIR 23 151 -111 20836 111 15 55 chr11 37179571 37184578 -111598894 + L1P LINE L1 9 4749 -1397 1068 196 67 25 chr11 37185236 37185476 -111597996 + MLT1C LTR MaLR 170 419 -48 304 247 0 0 chr11 37185494 37185583 -111597889 - L1MC4 LINE L1 -1340 6702 6614 234 150 0 0 chr11 37185586 37185626 -111597846 + (TA)n Simple_repeat Simple_repeat 1 40 0 236 284 23 0 chr11 37185627 37185715 -111597757 + L1MC4 LINE L1 6614 6703 -1339 241 239 0 43 chr11 37185830 37185922 -111597550 - L1MC4 LINE L1 -1340 6702 6615 270 175 31 31 chr11 37186062 37186159 -111597313 - L1ME4a LINE L1 -46 6075 5979 2040 139 0 17 chr11 37186167 37186469 -111597003 - AluSx SINE Alu -15 297 1 316 303 83 64 chr11 37186595 37186813 -111596659 - L1ME4a LINE L1 -266 5855 5634 1641 153 53 0 chr11 37187073 37187335 -111596137 + AluJo SINE Alu 14 289 -23 207 69 0 0 chr11 37187338 37187367 -111596105 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 23 0 0 0 chr11 37187827 37187850 -111595622 + AT_rich Low_complexity Low_complexity 1 23 0 242 270 0 32 chr11 37187870 37187933 -111595539 + L2 LINE L2 3207 3267 -5 1623 251 71 64 chr11 37188175 37189061 -111594411 + HAL1 LINE L1 1603 2494 -13 221 255 0 0 chr11 37189698 37189749 -111593723 - MIR SINE MIR 0 262 212 476 91 0 0 chr11 37189849 37189915 -111593557 - AluSc SINE Alu -70 239 174 29 0 0 0 chr11 37191388 37191417 -111592055 + AT_rich Low_complexity Low_complexity 1 29 0 454 174 0 11 chr11 37191577 37191669 -111591803 - MLT1B LTR MaLR 0 390 300 1697 158 17 30 chr11 37192314 37192611 -111590861 - AluJo SINE Alu -19 293 1 2002 122 0 4 chr11 37193138 37193416 -111590056 + AluSx SINE Alu 1 277 -35 778 178 97 0 chr11 37193530 37193715 -111589757 - MIR SINE MIR -43 219 17 2617 37 46 0 chr11 37193764 37194092 -111589380 - L1PA4 LINE L1 -8 6147 5805 657 288 123 64 chr11 37194618 37195090 -111588382 + L2 LINE L2 2814 3313 0 2067 148 3 0 chr11 37195702 37196032 -111587440 + MER7A DNA MER2_type 18 346 0 310 267 22 0 chr11 37196618 37196708 -111586764 + GA-rich Low_complexity Low_complexity 3 94 0 457 318 85 76 chr11 37197731 37198059 -111585413 + L2 LINE L2 2847 3182 -90 1915 124 33 0 chr11 37198059 37198360 -111585112 - AluSx SINE Alu 0 310 1 457 318 85 76 chr11 37198360 37198452 -111585020 + L2 LINE L2 3182 3272 0 24 0 0 0 chr11 37198684 37198708 -111584764 + AT_rich Low_complexity Low_complexity 1 24 0 391 278 153 17 chr11 37198800 37198976 -111584496 - MIR SINE MIR -35 227 28 431 256 25 16 chr11 37199018 37199139 -111584333 - MIR3 SINE MIR -43 165 44 275 301 12 0 chr11 37199703 37199786 -111583686 - MIR SINE MIR -19 243 160 1291 158 58 70 chr11 37199805 37200133 -111583339 - L1ME1 LINE L1 -4 6162 5839 384 316 82 0 chr11 37200149 37200283 -111583189 - MIR SINE MIR -56 152 4 625 242 154 6 chr11 37200647 37200829 -111582643 + MIR SINE MIR 43 251 -11 344 240 27 0 chr11 37200941 37201016 -111582456 - L2 LINE L2 -5 3308 3232 21 37 0 56 chr11 37201078 37201132 -111582340 + AT_rich Low_complexity Low_complexity 1 51 0 189 74 0 0 chr11 37201140 37201167 -111582305 + (TA)n Simple_repeat Simple_repeat 1 27 0 317 273 152 36 chr11 37201167 37201332 -111582140 - MIR SINE MIR -33 229 46 831 146 0 31 chr11 37202009 37202139 -111581333 + FLAM_A SINE Alu 2 127 -6 685 246 121 0 chr11 37202279 37202543 -111580929 - MER119 DNA MER1_type 0 583 288 1812 148 83 15 chr11 37202882 37203207 -111580265 + MER7A DNA MER2_type 2 346 0 280 292 74 79 chr11 37203548 37203769 -111579703 - L2 LINE L2 -270 3002 2776 256 312 118 51 chr11 37203991 37204228 -111579244 + MLT1K LTR MaLR 329 581 -7 242 244 0 0 chr11 37204761 37204806 -111578666 + MIR SINE MIR 78 122 -86 298 177 48 0 chr11 37204837 37204899 -111578573 - MIR SINE MIR -1 261 197 372 323 8 15 chr11 37205003 37205133 -111578339 - MIR3 SINE MIR -36 172 44 372 323 92 18 chr11 37205148 37205808 -111577664 + L1ME LINE L1 4382 5090 -1056 235 273 68 45 chr11 37206020 37206196 -111577276 + L1ME LINE L1 5384 5563 -607 37680 40 1 2 chr11 37206244 37211019 -111572453 - L1P LINE L1 -1367 4779 8 12399 199 24 18 chr11 37211019 37216731 -111566741 - L1 LINE L1 -1195 5972 189 4928 189 33 32 chr11 37216728 37217542 -111565930 - L1PA13 LINE L1 -4257 2540 1702 * 2397 103 0 0 chr11 37217542 37217853 -111565619 + AluY SINE Alu 1 311 0 4928 189 33 32 chr11 37217853 37218345 -111565127 - L1PA13 LINE L1 -5095 1702 1212 465 309 31 0 chr11 37218747 37218909 -111564563 - MIR SINE MIR -22 240 74 183 274 96 14 chr11 37219801 37219874 -111563598 + MIR SINE MIR 56 134 -128 784 253 37 11 chr11 37220705 37220895 -111562577 - MIR SINE MIR -14 248 54 691 240 99 8 chr11 37221012 37221254 -111562218 - L1ME3A LINE L1 -25 6145 5882 1505 232 22 74 chr11 37221254 37221806 -111561666 - MER65B LTR ERV1 -6 525 3 937 251 27 7 chr11 37221808 37222122 -111561350 - L1ME3A LINE L1 -279 5885 5550 390 231 19 13 chr11 37222122 37222278 -111561194 - L1ME3A LINE L1 -987 5159 5003 21 0 0 0 chr11 37222281 37222302 -111561170 + AT_rich Low_complexity Low_complexity 1 21 0 4642 141 21 0 chr11 37222333 37223185 -111560287 - L1MA8 LINE L1 -199 6092 5225 1613 158 108 9 chr11 37223185 37223501 -111559971 - MER47A DNA MER2_type 0 366 20 11303 182 35 12 chr11 37223507 37224407 -111559065 - L1MA8 LINE L1 -924 5222 4344 2270 102 0 0 chr11 37224407 37224702 -111558770 + AluSg SINE Alu 1 295 -15 11303 182 35 12 chr11 37224702 37226359 -111557113 - L1MA8 LINE L1 -1802 4344 2607 886 260 94 55 chr11 37226369 37226973 -111556499 - L1ME3A LINE L1 -1145 5001 4374 4761 141 4 4 chr11 37226982 37227388 -111556084 - L1PA16 LINE L1 -9 6157 5752 2706 17 0 0 chr11 37227388 37227688 -111555784 - AluYb8 SINE Alu 0 318 19 4761 141 4 4 chr11 37227688 37228266 -111555206 - L1PA16 LINE L1 -413 5753 5145 2149 209 18 27 chr11 37228274 37228644 -111554828 - L1 LINE L1 -1860 4286 3921 2604 48 7 3 chr11 37228644 37228953 -111554519 + AluY SINE Alu 1 310 -1 2149 209 18 27 chr11 37228953 37229131 -111554341 - L1 LINE L1 -2225 3921 3743 21 95 0 0 chr11 37229131 37229194 -111554278 + AT_rich Low_complexity Low_complexity 1 63 0 299 273 34 0 chr11 37229194 37229282 -111554190 + MIR SINE MIR 172 262 0 205 250 50 38 chr11 37230438 37230518 -111552954 - L2 LINE L2 -8 3305 3225 717 279 85 0 chr11 37230528 37230729 -111552743 - MIR SINE MIR -30 232 15 946 200 63 5 chr11 37230921 37231126 -111552346 - MER20 DNA MER1_type 0 219 3 7229 250 51 15 chr11 37231213 37233961 -111549511 + L1ME2 LINE L1 2645 5488 -690 212 268 0 36 chr11 37234027 37234083 -111549389 + MER5A DNA MER1_type 52 105 -84 758 239 94 9 chr11 37234653 37234866 -111548606 + MIR SINE MIR 7 237 -25 221 267 0 17 chr11 37234834 37234894 -111548578 + L2 LINE L2 3210 3268 -4 * 513 0 0 0 chr11 37235075 37235132 -111548340 + (TG)n Simple_repeat Simple_repeat 2 58 0 238 317 112 24 chr11 37235895 37236100 -111547372 + L2 LINE L2 2549 2771 -543 883 265 122 69 chr11 37236200 37236379 -111547093 + MLT1H1 LTR MaLR 22 190 -365 2389 96 0 0 chr11 37236379 37236682 -111546790 - AluSg SINE Alu -3 307 5 883 265 122 69 chr11 37236682 37237044 -111546428 + MLT1H1 LTR MaLR 190 553 -2 234 356 47 54 chr11 37237115 37237264 -111546208 + L2 LINE L2 2932 3079 -193 289 143 0 0 chr11 37237267 37237316 -111546156 - L2 LINE L2 -3 3310 3262 292 346 65 9 chr11 37237417 37237524 -111545948 + L2 LINE L2 3160 3272 0 939 184 14 63 chr11 37238211 37238434 -111545038 + MER20 DNA MER1_type 8 219 0 675 188 169 6 chr11 37238442 37238602 -111544870 - MER5A DNA MER1_type 0 189 4 392 338 12 12 chr11 37239560 37239720 -111543752 - MIR SINE MIR -1 261 102 332 306 53 71 chr11 37240125 37240295 -111543177 - MIR3 SINE MIR -35 173 7 1834 226 58 28 chr11 37240928 37241458 -111542014 + L1ME2 LINE L1 5619 6164 0 373 207 43 35 chr11 37241494 37241610 -111541862 + L1MC5 LINE L1 7815 7931 -30 233 260 0 0 chr11 37242405 37242455 -111541017 - L2 LINE L2 -8 3264 3215 1384 136 0 83 chr11 37242457 37242627 -111540845 + THE1C LTR MaLR 3 150 -225 2172 113 0 0 chr11 37242627 37242933 -111540539 - AluY SINE Alu 0 306 1 1384 136 0 83 chr11 37242933 37243003 -111540469 + THE1C LTR MaLR 150 224 -151 9661 110 47 8 chr11 37243003 37244396 -111539076 + THE1C-int LTR MaLR 134 1580 0 2648 121 28 0 chr11 37244420 37244784 -111538688 + THE1C LTR MaLR 2 375 0 237 247 37 49 chr11 37244785 37244866 -111538606 - L2 LINE L2 -54 3259 3180 333 304 22 0 chr11 37244971 37245063 -111538409 - MIR3 SINE MIR -42 166 73 252 307 57 21 chr11 37245620 37245760 -111537712 + L2 LINE L2 2698 2842 -472 265 279 139 16 chr11 37245871 37246000 -111537472 - L2 LINE L2 -4 3309 3165 557 316 131 33 chr11 37246039 37246368 -111537104 - L2 LINE L2 -354 2960 2574 504 245 28 0 chr11 37246368 37246474 -111536998 + MER81 DNA DNA 5 113 -1 557 316 131 33 chr11 37246474 37246594 -111536878 - L2 LINE L2 -740 2574 2467 488 271 86 7 chr11 37247053 37247204 -111536268 + MIR SINE MIR 35 197 -65 555 314 39 39 chr11 37247386 37247641 -111535831 + MIR SINE MIR 5 259 -3 2735 226 6 3 chr11 37247843 37248490 -111534982 - L1 LINE L1 -800 5346 4698 2148 208 4 0 chr11 37248490 37248951 -111534521 + L1 LINE L1 4253 4715 -1431 * 10724 200 25 5 chr11 37248950 37251426 -111532046 - L1P5 LINE L1 -666 5490 2970 235 344 107 0 chr11 37251636 37251767 -111531705 - MIR SINE MIR -10 252 108 183 213 0 21 chr11 37254642 37254689 -111528783 - L2 LINE L2 0 3313 3268 494 287 7 59 chr11 37254739 37254893 -111528579 + MIR SINE MIR 36 180 -63 600 335 143 22 chr11 37255266 37255361 -111528111 - L2 LINE L2 0 3313 3231 3143 163 14 43 chr11 37255361 37255937 -111527535 - MER89 LTR ERV1 0 559 1 600 335 143 22 chr11 37255937 37256309 -111527163 - L2 LINE L2 -82 3231 2791 514 282 52 85 chr11 37256311 37256712 -111526760 - L2 LINE L2 -636 2678 2291 2102 118 13 16 chr11 37256911 37257215 -111526257 + AluSx SINE Alu 10 312 0 1161 263 56 56 chr11 37257419 37257883 -111525589 + L2 LINE L2 1371 1834 -1480 613 246 7 0 chr11 37257898 37258036 -111525436 - L1ME1 LINE L1 -7 6159 6021 8146 195 39 14 chr11 37258041 37259990 -111523482 + L1M3f LINE L1 7 1907 -4421 2707 45 0 0 chr11 37259990 37260298 -111523174 + AluY SINE Alu 1 308 -3 8146 195 39 14 chr11 37260298 37262428 -111521044 + L1M3f LINE L1 1907 4170 -2158 498 93 0 13 chr11 37262428 37262503 -111520969 - HSMAR1 DNA Mariner -1213 74 1 649 274 53 10 chr11 37262555 37262763 -111520709 + L2 LINE L2 2533 2749 -565 326 211 39 39 chr11 37262763 37262891 -111520581 + L1MC5 LINE L1 7404 7531 -430 326 290 37 65 chr11 37262967 37263181 -111520291 + L1ME3A LINE L1 5962 6169 -1 522 280 96 85 chr11 37263183 37263684 -111519788 + L2 LINE L2 2737 3248 -65 1256 197 18 4 chr11 37263684 37263912 -111519560 - REP3 LTR ERV -11 551 321 2399 122 19 25 chr11 37263912 37264273 -111519199 - THE1B LTR MaLR 0 364 6 12661 90 5 1 chr11 37264273 37265846 -111517626 - THE1B-int LTR MaLR 0 1580 1 2330 120 21 51 chr11 37265846 37266221 -111517251 - THE1B LTR MaLR 0 364 1 1501 239 15 18 chr11 37266221 37266547 -111516925 - REP3 LTR ERV -237 325 1 270 253 0 84 chr11 37266659 37266754 -111516718 + MIR SINE MIR 14 100 -162 24 32 0 0 chr11 37266794 37266825 -111516647 + AT_rich Low_complexity Low_complexity 1 31 0 760 280 32 0 chr11 37267079 37267268 -111516204 - MIR SINE MIR -57 205 11 1163 22 0 0 chr11 37267346 37267480 -111515992 - AluY SINE Alu -3 308 175 289 256 141 13 chr11 37267522 37267678 -111515794 - L1ME LINE L1 -341 5780 5605 277 222 8 128 chr11 37267755 37267872 -111515600 - MER5A DNA MER1_type -69 120 18 606 298 185 32 chr11 37268030 37268694 -111514778 - L2 LINE L2 -37 3276 2520 212 318 0 16 chr11 37268802 37268865 -111514607 + MIR SINE MIR 56 117 -91 307 293 90 113 chr11 37268929 37269185 -111514287 - L2 LINE L2 -5 3267 3018 184 302 89 49 chr11 37270370 37270557 -111512915 + MIR SINE MIR 31 219 -43 268 331 81 24 chr11 37270705 37270829 -111512643 + MIR3 SINE MIR 63 193 -15 331 347 21 14 chr11 37271023 37271167 -111512305 - MIR3 SINE MIR -35 173 29 276 287 117 0 chr11 37271335 37271429 -111512043 + MIR SINE MIR 29 133 -129 1061 328 47 36 chr11 37273135 37273601 -111509871 + MLT1K LTR MaLR 54 524 -64 392 179 37 52 chr11 37273925 37274029 -111509443 + MER5A DNA MER1_type 4 105 -84 221 301 72 0 chr11 37274217 37274300 -111509172 - MIR SINE MIR -116 146 58 2864 225 45 20 chr11 37274316 37275247 -111508225 + L1ME1 LINE L1 5056 6014 -152 1678 151 29 118 chr11 37275250 37275666 -111507806 - MLT1B LTR MaLR 0 390 12 398 255 7 76 chr11 37275677 37275822 -111507650 + L1ME1 LINE L1 6011 6145 -21 21 0 0 0 chr11 37275831 37275852 -111507620 + AT_rich Low_complexity Low_complexity 1 21 0 564 15 0 0 chr11 37277061 37277126 -111506346 + (CA)n Simple_repeat Simple_repeat 2 66 0 289 120 80 0 chr11 37277358 37277408 -111506064 - MIR SINE MIR -69 193 140 312 133 0 0 chr11 37277414 37277459 -111506013 - MLT1C LTR MaLR -2 465 421 270 301 38 45 chr11 37277463 37277596 -111505876 - MIR SINE MIR -124 138 7 655 268 25 45 chr11 37277875 37278128 -111505344 - MIR SINE MIR 0 262 16 1267 174 39 8 chr11 37279272 37279530 -111503942 + L1MD3 LINE L1 7730 7995 0 690 257 18 12 chr11 37279605 37279776 -111503696 - MIR SINE MIR -46 216 45 284 238 50 79 chr11 37279870 37279971 -111503501 + MER96B DNA MER1_type? 1 98 -319 21 0 0 0 chr11 37279971 37279992 -111503480 + AT_rich Low_complexity Low_complexity 1 21 0 3052 75 13 0 chr11 37280112 37280510 -111502962 - L1PA10 LINE L1 -31 6137 5735 1912 88 0 0 chr11 37280518 37280756 -111502716 - AluY SINE Alu -17 294 57 1501 196 35 26 chr11 37280757 37281099 -111502373 + L1MB3 LINE L1 5463 5807 -376 193 130 0 56 chr11 37281099 37281153 -111502319 + (CATA)n Simple_repeat Simple_repeat 1 51 0 2259 129 13 53 chr11 37281185 37281508 -111501964 + L1MB3 LINE L1 5802 6108 -75 2359 92 3 3 chr11 37281508 37281814 -111501658 - AluSg SINE Alu -4 306 1 2259 129 13 53 chr11 37281814 37281886 -111501586 + L1MB3 LINE L1 6108 6181 -2 481 125 12 0 chr11 37281897 37281977 -111501495 - MER96B DNA MER1_type? -49 368 288 1180 202 0 9 chr11 37281977 37282205 -111501267 + AluJo SINE Alu 84 309 -3 428 223 16 41 chr11 37282205 37282326 -111501146 - MER96B DNA MER1_type? -127 290 173 1845 178 3 0 chr11 37282728 37283020 -111500452 + AluJo SINE Alu 1 293 -19 1180 173 4 31 chr11 37283626 37283851 -111499621 + MER20 DNA MER1_type 1 219 0 287 283 33 11 chr11 37284147 37284239 -111499233 + L2 LINE L2 3179 3272 0 318 281 55 16 chr11 37284393 37284521 -111498951 - L2 LINE L2 -10 3303 3171 251 276 69 0 chr11 37284723 37284810 -111498662 + Charlie7 DNA MER1_type 10 102 -2510 867 270 48 72 chr11 37284858 37285314 -111498158 - LTR16A LTR ERVL -5 445 1 993 248 38 4 chr11 37285709 37285947 -111497525 + MIR SINE MIR 7 252 -10 334 224 171 0 chr11 37286025 37286101 -111497371 - MLT1J LTR MaLR 0 511 423 345 161 0 81 chr11 37286173 37286260 -111497212 - MLT1J LTR MaLR -197 314 235 677 251 51 6 chr11 37287149 37287324 -111496148 - MIR SINE MIR -70 192 10 424 345 82 76 chr11 37287398 37287740 -111495732 - L2 LINE L2 -8 3264 2921 462 36 0 0 chr11 37287859 37287915 -111495557 + (CA)n Simple_repeat Simple_repeat 2 57 0 441 280 0 0 chr11 37288683 37288790 -111494682 + MIR SINE MIR 47 153 -109 2277 99 0 3 chr11 37288873 37289176 -111494296 - AluY SINE Alu -9 302 1 332 296 0 0 chr11 37290297 37290385 -111493087 - L1MC4 LINE L1 -1339 6703 6616 204 67 0 0 chr11 37290385 37290415 -111493057 + (TCTA)n Simple_repeat Simple_repeat 2 31 0 927 249 70 5 chr11 37290795 37291008 -111492464 + Charlie1 DNA MER1_type 13 239 -2522 710 214 14 0 chr11 37290993 37291133 -111492339 + Charlie1 DNA MER1_type 2620 2761 0 * 2422 151 55 19 chr11 37291139 37291556 -111491916 + MSTB1 LTR MaLR 1 432 0 427 301 216 0 chr11 37291652 37291828 -111491644 - MIR SINE MIR -4 258 45 577 310 22 33 chr11 37291836 37292110 -111491362 - L1ME LINE L1 -314 5807 5537 394 286 46 101 chr11 37292292 37292659 -111490813 + MARNA DNA Mariner 31 377 -209 1423 229 74 20 chr11 37292683 37293076 -111490396 + LTR16A1 LTR ERVL 44 457 0 1234 330 74 34 chr11 37293215 37294011 -111489461 + ERVL LTR ERVL 149 976 -4020 1922 340 68 36 chr11 37294185 37294713 -111488759 + ERVL LTR ERVL 1216 1725 -3760 2337 138 19 32 chr11 37294713 37295082 -111488390 + THE1B LTR MaLR 1 364 0 1922 340 68 36 chr11 37295082 37296278 -111487194 + ERVL LTR ERVL 1725 3074 -2411 377 250 0 0 chr11 37296278 37296354 -111487118 + LTR16A1 LTR ERVL 382 457 0 285 353 34 0 chr11 37296382 37296501 -111486971 + MIR SINE MIR 30 152 -56 434 222 105 39 chr11 37297172 37297325 -111486147 + MER103 DNA DNA 3 165 -1 6924 80 12 8 chr11 37297644 37298977 -111484495 + L1PA13 LINE L1 4821 6163 0 666 159 177 0 chr11 37299135 37299248 -111484224 - FLAM_C SINE Alu 0 133 1 2185 87 4 0 chr11 37299393 37299670 -111483802 - AluSg SINE Alu -1 309 32 831 271 40 33 chr11 37299679 37299981 -111483491 + L2 LINE L2 3005 3308 -5 487 298 83 0 chr11 37300004 37300172 -111483300 - MIR SINE MIR -77 185 4 247 244 73 12 chr11 37301914 37301996 -111481476 + MER91C DNA MER1_type 29 115 -25 226 227 0 0 chr11 37302595 37302639 -111480833 - ORSL DNA AcHobo 0 275 232 180 111 0 0 chr11 37303353 37303380 -111480092 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 904 209 34 64 chr11 37303571 37303805 -111479667 - MIR SINE MIR -13 249 23 265 316 29 123 chr11 37303840 37304193 -111479279 - L2 LINE L2 -173 3099 2771 1099 283 52 24 chr11 37304419 37304913 -111478559 + L1ME LINE L1 5283 5800 -321 706 200 0 0 chr11 37304939 37305054 -111478418 - FLAM_C SINE Alu -26 117 3 493 291 18 24 chr11 37306879 37307044 -111476428 - MIR3 SINE MIR -29 179 16 180 0 0 0 chr11 37307185 37307205 -111476267 + (T)n Simple_repeat Simple_repeat 1 20 0 305 211 40 13 chr11 37307224 37307300 -111476172 - MER116 DNA Mariner 0 80 3 2402 46 0 7 chr11 37307332 37307658 -111475814 + AluY SINE Alu 2 325 0 341 277 109 0 chr11 37308063 37308164 -111475308 + L2 LINE L2 3201 3312 -1 216 97 0 0 chr11 37308228 37308259 -111475213 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 946 193 0 0 chr11 37308261 37308406 -111475066 - FRAM SINE Alu -31 145 1 428 275 243 5 chr11 37310301 37310490 -111472982 - MIR SINE MIR -27 235 2 233 328 151 21 chr11 37310502 37310688 -111472784 + L2 LINE L2 1935 2144 -1170 440 363 24 0 chr11 37310744 37310868 -111472604 + L2 LINE L2 3146 3272 0 799 318 42 15 chr11 37311575 37311977 -111471495 - HERV16 LTR ERVL -1576 4078 3666 2897 111 10 0 chr11 37311979 37312374 -111471098 + MER1A DNA MER1_type 131 529 0 1565 307 85 14 chr11 37312374 37312429 -111471043 - HERV16 LTR ERVL -1905 3091 3041 2334 156 4 87 chr11 37312429 37312879 -111470593 - MLT2D LTR ERVL 0 414 2 1565 307 85 14 chr11 37312879 37313596 -111469876 - HERV16 LTR ERVL -1955 3041 2573 924 181 0 12 chr11 37313597 37313757 -111469715 - FRAM SINE Alu -19 157 1 4015 291 85 25 chr11 37313785 37314701 -111468771 - HERV16 LTR ERVL -2469 2527 1668 1981 112 72 4 chr11 37314701 37314978 -111468494 - AluSg SINE Alu -14 296 1 4015 291 85 25 chr11 37314978 37316421 -111467051 - HERV16 LTR ERVL -3328 1668 1 1124 259 93 38 chr11 37316421 37316520 -111466952 - LTR16A LTR ERVL 0 450 358 486 292 0 0 chr11 37316520 37316633 -111466839 - MER81 DNA DNA 0 114 2 1124 259 93 38 chr11 37316633 37316954 -111466518 - LTR16A LTR ERVL -92 358 7 1923 209 86 70 chr11 37317340 37317930 -111465542 + LTR9 LTR ERV1 2 601 -11 4518 165 58 28 chr11 37318155 37318978 -111464494 + MER21B LTR ERV1 5 852 -11 2407 125 9 9 chr11 37319060 37319397 -111464075 + MER1B DNA MER1_type 1 337 0 344 274 58 106 chr11 37320164 37320390 -111463082 - MLT1K LTR MaLR -41 547 333 3327 161 115 58 chr11 37320771 37321251 -111462221 + LTR1B LTR ERV1 1 545 -281 2268 115 66 20 chr11 37321251 37321599 -111461873 + THE1B LTR MaLR 1 364 0 3327 161 115 58 chr11 37321599 37321899 -111461573 + LTR1B LTR ERV1 545 826 0 453 252 49 0 chr11 37323052 37323175 -111460297 - MLT1H LTR MaLR -297 252 124 736 127 9 27 chr11 37323201 37323311 -111460161 - AluSg/x SINE Alu -26 286 179 524 167 10 31 chr11 37323302 37323398 -111460074 - AluSg/x SINE Alu -93 217 124 * 1542 56 0 0 chr11 37323398 37323578 -111459894 - L1PA5 LINE L1 -5 6149 5970 242 260 160 0 chr11 37323830 37323930 -111459542 + MIR SINE MIR 32 147 -115 2026 122 0 14 chr11 37325681 37325990 -111457482 - AluSx SINE Alu 0 305 1 305 224 79 13 chr11 37326892 37326968 -111456504 + MIR SINE MIR 108 188 -74 2204 104 16 3 chr11 37327153 37327460 -111456012 + AluSx SINE Alu 1 311 -1 5054 98 8 5 chr11 37327470 37328135 -111455337 + L1PA14 LINE L1 5493 6159 -2 1751 191 3 0 chr11 37330485 37330783 -111452689 + AluSx SINE Alu 1 299 -13 645 164 23 18 chr11 37331097 37331372 -111452100 + (TA)n Simple_repeat Simple_repeat 1 276 0 430 145 0 0 chr11 37331374 37331436 -111452036 + Tigger3b DNA MER2_type 30 91 -1140 2429 149 14 45 chr11 37331446 37331889 -111451583 - LTR3 LTR ERVK -3 429 1 * 6671 120 60 22 chr11 37331889 37332992 -111450480 + Tigger3b DNA MER2_type 87 1231 0 270 256 167 0 chr11 37334626 37334716 -111448756 + MIR SINE MIR 148 252 -10 21 57 0 0 chr11 37335077 37335112 -111448360 + AT_rich Low_complexity Low_complexity 1 35 0 3039 115 5 2 chr11 37335520 37335938 -111447534 - L1PA15 LINE L1 -2 6163 5745 285 247 26 0 chr11 37340237 37340314 -111443158 - L3b LINE CR1 -227 1356 1278 1508 150 0 68 chr11 37340430 37340696 -111442776 + AluJb SINE Alu 40 287 -25 222 37 0 0 chr11 37341907 37341934 -111441538 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 464 314 81 88 chr11 37341947 37342082 -111441390 + L1MEd LINE L1 3 137 -5982 5248 57 47 1 chr11 37342082 37342767 -111440705 + L1PA7 LINE L1 5428 6143 -11 464 314 81 88 chr11 37342767 37343099 -111440373 + L1MEd LINE L1 137 467 -5652 3311 132 64 56 chr11 37343519 37344158 -111439314 + LTR9B LTR ERV1 1 644 0 51094 138 42 21 chr11 37344158 37344829 -111438643 + HUERS-P3 LTR ERV1 1 656 -8263 2468 48 0 3 chr11 37344829 37345121 -111438351 - AluY SINE Alu 0 311 21 705 67 0 0 chr11 37345121 37345211 -111438261 - AluY SINE Alu -221 90 1 51094 138 42 21 chr11 37345211 37353183 -111430289 + HUERS-P3 LTR ERV1 655 8919 0 618 211 136 11 chr11 37354064 37354329 -111429143 - LTR37A LTR ERV1 -35 391 94 377 295 70 0 chr11 37354602 37354731 -111428741 + MIR3 SINE MIR 31 168 -40 729 277 92 94 chr11 37355290 37355748 -111427724 - L2 LINE L2 -33 3280 2824 1026 302 113 11 chr11 37355759 37356279 -111427193 - L2 LINE L2 -1640 1674 1102 183 314 163 45 chr11 37356297 37356561 -111426911 - L2 LINE L2 -1408 1906 1612 814 214 204 18 chr11 37356697 37356917 -111426555 - MIR SINE MIR 0 262 2 237 346 83 6 chr11 37356941 37357097 -111426375 - L2 LINE L2 -1880 1434 1267 197 313 0 10 chr11 37357209 37357305 -111426167 - L2 LINE L2 -2509 805 711 538 273 79 19 chr11 37357556 37357772 -111425700 + Charlie8 DNA MER1_type 24 252 -2165 512 314 198 51 chr11 37358437 37358494 -111424978 + L2 LINE L2 2231 2278 -994 3281 67 30 5 chr11 37358494 37358927 -111424545 + MLT2A1 LTR ERVL 1 444 0 512 314 198 51 chr11 37358927 37359325 -111424147 + L2 LINE L2 2278 2616 -656 4672 59 101 0 chr11 37359325 37359948 -111423524 - LTR12 LTR ERV1 -2 686 1 512 314 198 51 chr11 37359948 37360402 -111423070 + L2 LINE L2 2616 3268 -4 2299 99 10 0 chr11 37360764 37361068 -111422404 + AluSq SINE Alu 1 307 -6 21 57 0 0 chr11 37362438 37362473 -111420999 + GC_rich Low_complexity Low_complexity 1 35 0 220 272 126 29 chr11 37363899 37364002 -111419470 - MER5A DNA MER1_type -43 146 34 1592 133 41 38 chr11 37364204 37364497 -111418975 + AluJo SINE Alu 8 301 -11 1721 180 82 43 chr11 37364678 37365140 -111418332 - MLT1D LTR MaLR -3 502 23 185 305 0 61 chr11 37365207 37365289 -111418183 - L3 LINE CR1 -199 1378 1302 248 316 120 13 chr11 37365517 37365675 -111417797 - MIR SINE MIR -9 253 79 199 244 12 98 chr11 37365829 37365911 -111417561 - L2 LINE L2 -27 3245 3171 203 337 22 0 chr11 37366101 37366190 -111417282 - L2 LINE L2 -290 2982 2892 325 280 190 41 chr11 37366561 37366950 -111416522 + Charlie8 DNA MER1_type 84 530 -1887 194 0 39 0 chr11 37367641 37367667 -111415805 + (TTTTA)n Simple_repeat Simple_repeat 1 27 0 224 281 182 25 chr11 37367924 37368045 -111415427 - MIR SINE MIR -53 209 70 302 314 58 15 chr11 37368081 37368218 -111415254 - MLT1L LTR MaLR -292 323 181 491 198 0 36 chr11 37368368 37368479 -111414993 - MIR SINE MIR 0 262 156 330 26 0 0 chr11 37368906 37368945 -111414527 + (TG)n Simple_repeat Simple_repeat 2 40 0 452 252 257 5 chr11 37370228 37370278 -111413194 - MIR SINE MIR -3 259 223 1873 123 74 0 chr11 37370278 37370562 -111412910 - AluSx SINE Alu -7 305 1 452 252 257 5 chr11 37370562 37370717 -111412755 - MIR SINE MIR -39 223 2 36 0 0 0 chr11 37370729 37370765 -111412707 + AT_rich Low_complexity Low_complexity 1 36 0 283 241 105 68 chr11 37370767 37370929 -111412543 - HAL1 LINE L1 -7 2500 2333 364 242 191 17 chr11 37370981 37371159 -111412313 - HAL1 LINE L1 -311 2196 1988 463 242 50 8 chr11 37371280 37371537 -111411935 - HAL1 LINE L1 -2030 477 96 255 260 24 24 chr11 37371614 37371737 -111411735 - L1ME4a LINE L1 -30 6091 5969 1121 132 72 72 chr11 37371782 37372017 -111411455 + MER46A DNA MER2_type 1 235 -1 21 36 0 0 chr11 37374010 37374038 -111409434 + AT_rich Low_complexity Low_complexity 1 28 0 1495 147 41 0 chr11 37375277 37375522 -111407950 - AluSx SINE Alu -12 300 46 230 56 28 0 chr11 37377016 37377052 -111406420 + (TTG)n Simple_repeat Simple_repeat 2 38 0 351 0 0 0 chr11 37377854 37377893 -111405579 + (TG)n Simple_repeat Simple_repeat 2 40 0 1577 271 70 30 chr11 37378441 37379045 -111404427 + L1MC5 LINE L1 5307 5934 -1874 2849 215 78 73 chr11 37379617 37380613 -111402859 + L1MC5 LINE L1 6625 7630 -331 2018 144 3 7 chr11 37380613 37380919 -111402553 - AluJb SINE Alu -6 306 2 2849 215 78 73 chr11 37380919 37381202 -111402270 + L1MC5 LINE L1 7630 7910 -51 38 0 0 0 chr11 37381202 37381240 -111402232 + AT_rich Low_complexity Low_complexity 1 38 0 296 344 142 24 chr11 37382460 37382672 -111400800 - L2 LINE L2 -162 3110 2874 2179 119 20 0 chr11 37382820 37383123 -111400349 - AluSx SINE Alu -1 311 3 694 238 35 62 chr11 37383454 37383710 -111399762 - L2 LINE L2 -870 2444 2196 670 278 94 7 chr11 37383774 37384051 -111399421 + L1MEd LINE L1 502 802 -5317 608 238 35 56 chr11 37384079 37384398 -111399074 + L1MEd LINE L1 904 1215 -4904 333 0 0 0 chr11 37385510 37385547 -111397925 + (TG)n Simple_repeat Simple_repeat 1 37 0 1350 205 45 24 chr11 37386586 37386961 -111396511 - L1MB8 LINE L1 -2 6176 5794 366 191 15 0 chr11 37387046 37387114 -111396358 + MER3 DNA MER1_type 7 75 -134 218 345 66 56 chr11 37387311 37387508 -111395964 + L2 LINE L2 3069 3308 -5 244 224 129 12 chr11 37388125 37388210 -111395262 + L2 LINE L2 3182 3276 -37 344 294 73 0 chr11 37388486 37388595 -111394877 - MIR SINE MIR -139 123 7 258 259 0 49 chr11 37388828 37388909 -111394563 + CT-rich Low_complexity Low_complexity 6 82 0 251 341 75 62 chr11 37389688 37390072 -111393400 + L2 LINE L2 2829 3217 -55 266 169 45 0 chr11 37390073 37390162 -111393310 + (TA)n Simple_repeat Simple_repeat 2 94 0 2011 125 0 3 chr11 37390172 37390461 -111393011 - AluSq SINE Alu -25 288 1 21 36 0 0 chr11 37390561 37390589 -111392883 + AT_rich Low_complexity Low_complexity 1 28 0 475 231 46 38 chr11 37390733 37391013 -111392459 - L1M4 LINE L1 -3795 2849 2567 24 0 0 0 chr11 37391088 37391112 -111392360 + AT_rich Low_complexity Low_complexity 1 24 0 334 114 100 29 chr11 37391153 37391223 -111392249 - MADE1 DNA Mariner -1 79 5 548 307 79 33 chr11 37391374 37391703 -111391769 - HAL1 LINE L1 -740 1767 1424 427 269 155 12 chr11 37391778 37391939 -111391533 - L1ME3 LINE L1 -2 6168 5985 586 276 63 104 chr11 37391950 37392399 -111391073 - L1M4 LINE L1 -4885 1749 1203 298 285 111 0 chr11 37393308 37393369 -111390103 - L1ME4a LINE L1 -2 6119 6066 216 111 0 0 chr11 37393369 37393405 -111390067 + (CA)n Simple_repeat Simple_repeat 1 36 0 298 285 111 0 chr11 37393405 37393515 -111389957 - L1ME4a LINE L1 -55 6066 5929 605 305 60 40 chr11 37394020 37394269 -111389203 + MIR SINE MIR 3 256 -6 1947 129 41 0 chr11 37395279 37395574 -111387898 - AluSp SINE Alu -2 311 5 22 35 0 0 chr11 37395977 37396006 -111387466 + AT_rich Low_complexity Low_complexity 1 29 0 563 165 165 0 chr11 37396255 37396388 -111387084 + MER114 LTR ERV 1 155 -493 7437 27 0 2 chr11 37396390 37397091 -111386381 - L1PA3 LINE L1 0 6155 5493 2553 36 0 10 chr11 37397091 37397400 -111386072 - AluY SINE Alu -5 306 1 7437 27 0 2 chr11 37397400 37398074 -111385398 - L1PA3 LINE L1 -662 5493 4819 11987 36 1 0 chr11 37398075 37399528 -111383944 + L1P LINE L1 3331 4785 -1361 935 185 82 0 chr11 37399754 37399938 -111383534 + MIR SINE MIR 31 229 -33 840 238 42 0 chr11 37400800 37400989 -111382483 - MIR SINE MIR -26 236 40 291 295 157 19 chr11 37400990 37401200 -111382272 + L3 LINE CR1 703 941 -636 198 200 113 62 chr11 37403151 37403231 -111380241 + L3 LINE CR1 1257 1340 -237 309 302 12 0 chr11 37403793 37403879 -111379593 - L2 LINE L2 -1 3271 3185 2074 103 7 7 chr11 37404361 37404642 -111378830 - AluSp SINE Alu -32 281 1 336 227 0 0 chr11 37404961 37405027 -111378445 + Charlie8 DNA MER1_type 123 188 -2229 26 0 0 0 chr11 37405218 37405244 -111378228 + AT_rich Low_complexity Low_complexity 1 26 0 4174 144 82 40 chr11 37405253 37406111 -111377361 + L1MB3 LINE L1 5282 6175 -8 22 35 0 0 chr11 37406351 37406380 -111377092 + AT_rich Low_complexity Low_complexity 1 29 0 332 297 47 58 chr11 37406908 37407289 -111376183 - L1ME LINE L1 -1239 5702 5326 262 262 47 47 chr11 37407350 37407457 -111376015 - L2 LINE L2 -80 3233 3127 1584 169 6 49 chr11 37409295 37409621 -111373851 - AluJo SINE Alu 0 312 1 2136 127 10 0 chr11 37410365 37410664 -111372808 + AluSx SINE Alu 3 304 -8 2162 212 43 69 chr11 37411053 37411722 -111371750 - MLT1E1 LTR MaLR 0 654 3 2340 115 0 0 chr11 37412881 37413193 -111370279 - AluSx SINE Alu 0 312 1 1591 183 38 7 chr11 37414029 37414319 -111369153 + AluJo SINE Alu 1 299 -13 878 200 42 50 chr11 37414733 37414973 -111368499 - L1M4 LINE L1 -3220 2926 2689 1907 169 135 17 chr11 37414973 37415329 -111368143 + MER47B DNA MER2_type 20 417 -1 2212 108 7 10 chr11 37415379 37415686 -111367786 - AluSg SINE Alu -4 306 1 222 300 14 0 chr11 37415774 37415844 -111367628 + (TATG)n Simple_repeat Simple_repeat 2 72 0 23 0 0 0 chr11 37416388 37416411 -111367061 + AT_rich Low_complexity Low_complexity 1 23 0 1141 177 59 5 chr11 37416694 37416914 -111366558 + MER46A DNA MER2_type 1 232 -4 5174 251 116 24 chr11 37417298 37418437 -111365035 - L1ME LINE L1 -1944 4997 3964 2007 146 0 3 chr11 37418437 37418739 -111364733 - AluSx SINE Alu -10 302 2 5174 251 116 24 chr11 37418739 37420051 -111363421 - L1ME LINE L1 -2977 3964 2220 3529 163 44 30 chr11 37420051 37420685 -111362787 - L1MB3 LINE L1 0 6183 5536 1448 178 73 4 chr11 37420685 37420960 -111362512 + AluJo SINE Alu 1 294 -18 3529 163 44 30 chr11 37420960 37421047 -111362425 - L1MB3 LINE L1 -647 5536 5452 5174 251 116 24 chr11 37421047 37421685 -111361787 - L1ME LINE L1 -4721 2220 1642 953 216 4 17 chr11 37421686 37421918 -111361554 - L1ME LINE L1 -6178 245 17 548 273 252 11 chr11 37422476 37422762 -111360710 - L2 LINE L2 -963 2351 1997 354 226 37 63 chr11 37423608 37423798 -111359674 - Charlie7 DNA MER1_type -11 2601 2417 206 241 0 37 chr11 37424362 37424416 -111359056 - MIR SINE MIR -59 149 98 1784 261 99 46 chr11 37424436 37425424 -111358048 - L2 LINE L2 -50 3263 2228 304 53 0 0 chr11 37425571 37425609 -111357863 + tRNA-Gln-CAG tRNA tRNA 1 38 -37 21 57 0 0 chr11 37425687 37425722 -111357750 + AT_rich Low_complexity Low_complexity 1 35 0 396 344 50 55 chr11 37425899 37426300 -111357172 - L1 LINE L1 -2500 3646 3248 355 206 0 0 chr11 37426412 37426485 -111356987 - LTR30 LTR ERV1 -98 624 552 7444 35 0 0 chr11 37427040 37428370 -111355102 - L1PA4 LINE L1 0 6155 4827 14216 43 0 2 chr11 37428370 37430138 -111353334 + L1PA4 LINE L1 3046 4812 -1334 2088 118 0 0 chr11 37431202 37431491 -111351981 + AluSc SINE Alu 1 289 -20 1973 153 0 10 chr11 37432064 37432372 -111351100 + AluSx SINE Alu 1 305 -7 26 30 0 0 chr11 37432590 37432623 -111350849 + AT_rich Low_complexity Low_complexity 1 33 0 446 310 107 15 chr11 37432955 37433152 -111350320 - MIR SINE MIR -25 237 23 285 29 0 0 chr11 37433771 37433805 -111349667 + (TG)n Simple_repeat Simple_repeat 2 35 0 518 284 89 36 chr11 37434292 37434517 -111348955 - MIR SINE MIR -24 238 2 1779 127 76 10 chr11 37434794 37435021 -111348451 + MER44D DNA MER2_type 5 215 -2276 1254 167 173 13 chr11 37435021 37435321 -111348151 - MER7A DNA MER2_type 0 346 1 1779 127 76 10 chr11 37435321 37435407 -111348065 + MER44D DNA MER2_type 215 609 0 294 377 140 3 chr11 37435654 37435962 -111347510 + L2 LINE L2 2955 3304 -9 284 289 53 20 chr11 37437229 37437381 -111346091 + L1ME LINE L1 5512 5668 -453 28 0 0 0 chr11 37437509 37437537 -111345935 + AT_rich Low_complexity Low_complexity 1 28 0 2076 132 10 3 chr11 37437668 37437978 -111345494 + AluSx SINE Alu 1 312 0 1473 231 120 10 chr11 37438651 37439158 -111344314 - L1ME3A LINE L1 -250 5920 5358 1777 251 107 23 chr11 37439218 37440093 -111343379 - L1ME3A LINE L1 -867 5279 4298 3096 131 64 55 chr11 37440093 37440688 -111342784 - MER7C DNA MER2_type -1 601 2 1777 251 107 23 chr11 37440688 37440871 -111342601 - L1ME3A LINE L1 -1848 4298 4132 1788 155 0 24 chr11 37442792 37443089 -111340383 - AluJb SINE Alu -22 290 1 23 33 0 0 chr11 37443948 37443978 -111339494 + AT_rich Low_complexity Low_complexity 1 30 0 253 294 130 4 chr11 37445453 37445561 -111337911 + MIR SINE MIR 30 149 -59 195 309 95 12 chr11 37445709 37445793 -111337679 - MIR SINE MIR -150 112 22 225 162 0 0 chr11 37446531 37446568 -111336904 - LTR41 LTR ERVL -736 37 1 2148 87 56 0 chr11 37448122 37448408 -111335064 - AluSg SINE Alu -6 304 3 2195 119 3 7 chr11 37448418 37448728 -111334744 - AluJo SINE Alu -3 309 1 657 243 41 82 chr11 37448900 37449143 -111334329 - MIR SINE MIR -1 261 29 3427 45 0 0 chr11 37450671 37451089 -111332383 - L1PA7 LINE L1 -11 6143 5726 3741 183 75 14 chr11 37451645 37452521 -111330951 + MER63C DNA MER1_type 1 930 0 22 0 0 0 chr11 37453297 37453319 -111330153 + AT_rich Low_complexity Low_complexity 1 22 0 341 298 42 123 chr11 37454868 37454924 -111328548 + L2 LINE L2 2997 3056 -216 2061 116 3 17 chr11 37454924 37455218 -111328254 - AluSx SINE Alu -22 290 1 341 298 42 123 chr11 37455218 37455446 -111328026 + L2 LINE L2 3056 3258 -14 649 123 175 0 chr11 37456675 37456789 -111326683 + AluJo SINE Alu 1 134 -178 603 213 58 32 chr11 37457219 37457374 -111326098 + MIR SINE MIR 55 213 -49 329 369 19 6 chr11 37457447 37457604 -111325868 - MIR3 SINE MIR -9 199 41 1588 176 39 39 chr11 37457979 37458285 -111325187 + AluJb SINE Alu 5 310 -2 228 135 0 0 chr11 37459002 37459039 -111324433 + (A)n Simple_repeat Simple_repeat 1 37 0 2148 123 0 22 chr11 37459041 37459358 -111324114 + AluSx SINE Alu 1 310 -2 324 287 21 0 chr11 37460924 37461073 -111322399 + (TATG)n Simple_repeat Simple_repeat 1 152 0 188 227 0 0 chr11 37461078 37461122 -111322350 - MER5B DNA MER1_type -131 47 4 484 283 161 5 chr11 37461582 37461787 -111321685 - MIR SINE MIR -19 243 7 2331 108 0 9 chr11 37462593 37462908 -111320564 + AluSx SINE Alu 1 312 0 240 268 73 32 chr11 37463376 37463596 -111319876 + L1ME4a LINE L1 5893 6121 0 199 271 290 0 chr11 37464128 37464235 -111319237 + MER5B DNA MER1_type 17 154 -24 947 146 50 9 chr11 37464755 37464975 -111318497 - MER45R DNA AcHobo -106 1475 1247 1675 150 13 22 chr11 37465008 37465322 -111318150 - L1MC1 LINE L1 -23 6310 6000 1339 227 99 42 chr11 37465461 37465672 -111317800 + MER114 LTR ERV 1 199 -449 1548 109 34 44 chr11 37465672 37465965 -111317507 - L1MA1 LINE L1 0 6302 6013 1339 227 99 42 chr11 37465965 37466239 -111317233 + MER114 LTR ERV 199 531 -117 1907 127 0 0 chr11 37466239 37466499 -111316973 - AluSx SINE Alu -15 297 38 1339 227 99 42 chr11 37466499 37466625 -111316847 + MER114 LTR ERV 531 648 0 28278 108 11 15 chr11 37468021 37472536 -111310936 + L1PA7 LINE L1 3 4503 -1643 6735 75 1 1 chr11 37472929 37474586 -111308886 + L1PA7 LINE L1 4512 6154 0 1726 124 23 101 chr11 37474834 37475222 -111308250 + MLT1A1 LTR MaLR 8 365 0 1642 174 11 7 chr11 37475476 37475758 -111307714 - AluJo SINE Alu -25 287 5 572 273 23 0 chr11 37475834 37475966 -111307506 - MIR SINE MIR -96 166 32 454 202 91 0 chr11 37476923 37477022 -111306450 + MIR SINE MIR 84 191 -71 785 244 109 61 chr11 37477255 37477648 -111305824 - MLT1H LTR MaLR -128 421 10 266 276 175 24 chr11 37477916 37478088 -111305384 - MIR SINE MIR -46 216 16 361 330 173 17 chr11 37478683 37478862 -111304610 - MIR SINE MIR -6 256 50 1447 151 7 53 chr11 37479161 37479460 -111304012 + AluSx SINE Alu 11 295 -17 638 323 44 8 chr11 37479472 37479720 -111303752 - MIR SINE MIR -5 257 1 22 0 0 0 chr11 37480609 37480631 -111302841 + AT_rich Low_complexity Low_complexity 1 22 0 1788 19 0 0 chr11 37480645 37480855 -111302617 + L1P1 LINE L1 5557 5766 -389 2744 82 3 0 chr11 37482706 37483060 -111300412 - THE1A LTR MaLR 0 355 1 11468 98 8 1 chr11 37483060 37484630 -111298842 - THE1A-int LTR MaLR 0 1580 1 2760 79 6 0 chr11 37484630 37484983 -111298489 - THE1A LTR MaLR 0 355 1 184 229 0 0 chr11 37485518 37485553 -111297919 + L2 LINE L2 3266 3300 -13 240 35 0 0 chr11 37485557 37485586 -111297886 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 1987 245 43 49 chr11 37485941 37486737 -111296735 - L1ME3A LINE L1 -10 6160 5282 727 205 0 0 chr11 37486737 37486854 -111296618 - FLAM_C SINE Alu -14 119 3 1987 245 43 49 chr11 37486854 37487473 -111295999 - L1ME3A LINE L1 -888 5282 4661 1999 144 0 29 chr11 37487506 37487812 -111295660 - AluSq SINE Alu -15 298 2 403 255 19 0 chr11 37488086 37488192 -111295280 - MIR SINE MIR 0 262 155 511 271 96 11 chr11 37488285 37488473 -111294999 - MIR3 SINE MIR -4 204 1 258 310 74 25 chr11 37488502 37488744 -111294728 + L2 LINE L2 1739 1992 -1322 309 0 0 0 chr11 37488744 37488784 -111294688 - L1PA6 LINE L1 -3 6151 6112 1364 166 36 0 chr11 37488784 37489031 -111294441 - THE1B LTR MaLR -105 259 4 250 306 83 0 chr11 37489034 37489106 -111294366 + L2 LINE L2 2242 2319 -995 349 217 36 72 chr11 37489647 37489785 -111293687 + L2 LINE L2 2306 2438 -876 1942 153 3 0 chr11 37489903 37490190 -111293282 - AluJb SINE Alu -12 300 13 703 257 72 29 chr11 37490251 37490558 -111292914 + L2 LINE L2 2994 3313 0 3149 185 69 37 chr11 37490760 37491488 -111291984 - L1MD1 LINE L1 0 6242 5492 2212 127 68 11 chr11 37491870 37492225 -111291247 - THE1C LTR MaLR 0 375 1 782 260 77 4 chr11 37492615 37492850 -111290622 - MIR SINE MIR -5 257 6 1103 120 19 0 chr11 37492885 37493043 -111290429 - MER1A DNA MER1_type 0 533 373 9032 27 16 0 chr11 37493043 37494105 -111289367 - L1P LINE L1 -1768 4378 3300 2207 141 0 0 chr11 37494105 37494418 -111289054 - MER1A DNA MER1_type -132 397 85 274 304 78 59 chr11 37494685 37494889 -111288583 - MIR SINE MIR -6 256 49 257 405 47 10 chr11 37495016 37495317 -111288155 + L2 LINE L2 2365 2676 -638 241 259 17 0 chr11 37495591 37495649 -111287823 + MIR SINE MIR 204 262 0 370 258 158 0 chr11 37496291 37496411 -111287061 + L1ME LINE L1 5680 5818 -303 820 167 39 6 chr11 37496806 37496986 -111286486 + MER53 DNA DNA 2 187 -2 472 335 22 54 chr11 37497846 37498162 -111285310 + LTR16B LTR ERVL 9 314 -150 1778 181 57 7 chr11 37498182 37498527 -111284945 + MLT1A1 LTR MaLR 13 446 0 424 236 152 11 chr11 37499654 37499832 -111283640 - MER113 DNA MER1_type? -5 516 314 1730 151 0 58 chr11 37499851 37500163 -111283309 - AluJb SINE Alu -18 294 1 537 282 82 86 chr11 37500232 37500663 -111282809 + L2 LINE L2 2667 3151 -162 4010 28 2 0 chr11 37500663 37501125 -111282347 + L1PA5 LINE L1 5692 6154 0 537 282 82 86 chr11 37501125 37501288 -111282184 + L2 LINE L2 3151 3313 0 1916 108 0 12 chr11 37501417 37501704 -111281768 + AluSx SINE Alu 40 312 0 230 280 0 0 chr11 37502875 37502925 -111280547 - MIR SINE MIR -61 147 98 1242 246 132 62 chr11 37504089 37504649 -111278823 + MER45C DNA AcHobo 1 599 -354 239 163 20 20 chr11 37504672 37504721 -111278751 + MER45C DNA AcHobo 905 953 0 194 309 18 0 chr11 37505736 37505791 -111277681 - L2 LINE L2 -10 3262 3207 217 314 12 12 chr11 37505903 37505989 -111277483 + MIR SINE MIR 58 143 -65 252 128 26 0 chr11 37506118 37506157 -111277315 - MLT1C LTR MaLR -2 465 426 1162 29 50 0 chr11 37506158 37506297 -111277175 + AluY SINE Alu 151 296 -15 2390 169 51 0 chr11 37506297 37506712 -111276760 - MLT1C LTR MaLR -31 436 1 299 247 14 0 chr11 37506762 37506835 -111276637 + MER117 DNA MER1_type 5 78 -119 892 250 177 23 chr11 37507891 37508191 -111275281 + MLT1H LTR MaLR 195 540 -9 1820 176 0 7 chr11 37508626 37508915 -111274557 + AluJo SINE Alu 1 287 -25 365 258 91 15 chr11 37509222 37509354 -111274118 + MER117 DNA MER1_type 11 152 -45 570 265 95 16 chr11 37510110 37510299 -111273173 + MIR SINE MIR 47 250 -12 927 148 6 40 chr11 37510396 37510572 -111272900 + MLT1A1 LTR MaLR 1 170 -195 36524 75 7 10 chr11 37510574 37516199 -111267273 + L1PA6 LINE L1 459 6067 -87 1132 65 13 7 chr11 37516305 37516459 -111267013 + L1PA10 LINE L1 6010 6164 -4 283 247 144 31 chr11 37517007 37517104 -111266368 + MIR SINE MIR 96 203 -59 559 346 90 45 chr11 37517416 37517927 -111265545 - LTR67 LTR ERVL -5 552 19 2323 85 3 0 chr11 37518894 37519187 -111264285 + AluSp SINE Alu 16 309 -4 388 246 110 8 chr11 37520140 37520258 -111263214 + MIR3 SINE MIR 51 180 -28 255 368 145 5 chr11 37520416 37520676 -111262796 + L2 LINE L2 2721 3017 -296 681 198 12 76 chr11 37520743 37520915 -111262557 + MER58B DNA MER1_type 181 341 0 289 314 64 29 chr11 37520931 37521103 -111262369 + L2 LINE L2 3118 3295 -18 1302 260 131 13 chr11 37522097 37522555 -111260917 + LTR33 LTR ERVL 3 514 -7 1719 307 37 31 chr11 37523198 37523905 -111259567 + ERVL LTR ERVL 3914 4624 -1140 1870 218 111 20 chr11 37523907 37524434 -111259038 - MLT1F1 LTR MaLR 0 567 2 1194 310 85 34 chr11 37524451 37525158 -111258314 + ERVL LTR ERVL 4638 5380 -384 724 278 142 0 chr11 37525349 37525561 -111257911 + LTR33 LTR ERVL 16 257 -264 268 305 54 36 chr11 37525637 37525804 -111257668 - LTR16C LTR ERVL -113 378 209 338 293 88 7 chr11 37526113 37526260 -111257212 + LTR33 LTR ERVL 361 519 -2 21 0 0 0 chr11 37526476 37526497 -111256975 + AT_rich Low_complexity Low_complexity 1 21 0 2015 166 27 27 chr11 37526502 37526869 -111256603 + THE1C LTR MaLR 1 367 -8 361 239 0 0 chr11 37526924 37526995 -111256477 + LTR67 LTR ERVL 3 73 -484 2724 90 14 11 chr11 37527014 37527382 -111256090 + THE1C LTR MaLR 1 369 -6 4735 137 69 69 chr11 37527389 37528290 -111255182 + THE1C-int LTR MaLR 1 901 -679 597 283 120 37 chr11 37528820 37529202 -111254270 - MLT1J LTR MaLR -97 414 1 251 237 175 26 chr11 37529583 37529697 -111253775 - MIR3 SINE MIR -63 145 15 211 191 0 21 chr11 37530599 37530646 -111252826 + L2 LINE L2 3219 3264 -8 588 235 118 38 chr11 37530753 37530991 -111252481 - MIR SINE MIR -2 260 4 22 0 0 0 chr11 37531253 37531275 -111252197 + GC_rich Low_complexity Low_complexity 1 22 0 3470 163 44 16 chr11 37531863 37532563 -111250909 + L1MA8 LINE L1 5569 6288 -3 409 238 98 8 chr11 37532665 37532787 -111250685 + MIR SINE MIR 34 166 -96 180 0 0 0 chr11 37533371 37533391 -111250081 + (CTGGGG)n Simple_repeat Simple_repeat 1 20 0 1066 258 16 0 chr11 37535647 37535899 -111247573 - MIR SINE MIR 0 262 7 2476 64 0 7 chr11 37536979 37537276 -111246196 + AluSp SINE Alu 1 295 -18 181 321 0 0 chr11 37537889 37537942 -111245530 + L2 LINE L2 3247 3299 -14 422 321 0 15 chr11 37538727 37538861 -111244611 + MIR3 SINE MIR 66 197 -11 181 204 56 0 chr11 37539120 37539174 -111244298 - MIR SINE MIR -127 135 79 183 306 0 12 chr11 37539962 37540047 -111243425 + MIR SINE MIR 66 149 -113 207 263 81 50 chr11 37540080 37540179 -111243293 - L2 LINE L2 -57 3256 3155 484 226 95 22 chr11 37540662 37540799 -111242673 + MER117 DNA MER1_type 6 152 -45 377 271 152 13 chr11 37542204 37542355 -111241117 - MIR3 SINE MIR -18 190 19 453 249 65 27 chr11 37542716 37542901 -111240571 - L2 LINE L2 -5 3308 3117 909 249 123 47 chr11 37544018 37544440 -111239032 - MLT1L LTR MaLR -69 546 93 1367 185 14 25 chr11 37545930 37546206 -111237266 + AluJo SINE Alu 10 282 -30 341 287 37 9 chr11 37546233 37546341 -111237131 + L2 LINE L2 3180 3290 -23 680 126 72 11 chr11 37546470 37546736 -111236736 + (TCTA)n Simple_repeat Simple_repeat 1 282 0 562 318 21 0 chr11 37547549 37547738 -111235734 + MIR SINE MIR 54 246 -16 268 318 28 9 chr11 37548888 37548995 -111234477 - MIR SINE MIR -65 143 35 356 366 11 11 chr11 37549757 37549932 -111233540 - MIR3 SINE MIR -24 184 10 224 57 0 29 chr11 37550076 37550111 -111233361 + (TC)n Simple_repeat Simple_repeat 1 34 0 369 283 87 40 chr11 37550372 37550545 -111232927 - MIR SINE MIR -35 227 47 253 294 102 34 chr11 37551133 37551310 -111232162 + L2 LINE L2 3084 3272 -41 201 159 0 0 chr11 37552039 37552083 -111231389 + (CA)n Simple_repeat Simple_repeat 1 44 0 490 253 7 39 chr11 37553086 37553240 -111230232 + MIR SINE MIR 107 255 -7 197 329 12 47 chr11 37554906 37554991 -111228481 - MIR SINE MIR -94 114 33 207 25 75 0 chr11 37556440 37556480 -111226992 + T-rich Low_complexity Low_complexity 2 44 0 569 249 94 20 chr11 37557474 37557675 -111225797 + MIR SINE MIR 37 252 -10 338 259 102 9 chr11 37558341 37558449 -111225023 - L2 LINE L2 0 3272 3155 276 77 0 0 chr11 37558585 37558624 -111224848 + (CA)n Simple_repeat Simple_repeat 2 40 0 646 237 45 0 chr11 37559058 37559214 -111224258 + MIR SINE MIR 51 213 -49 375 322 68 17 chr11 37559242 37559419 -111224053 - MIR SINE MIR -26 236 51 698 197 0 66 chr11 37560092 37560275 -111223197 + MIR SINE MIR 84 254 -8 7660 113 1 28 chr11 37560766 37561914 -111221558 - HSMAR2 DNA Mariner -1 1301 185 388 242 0 30 chr11 37562015 37562114 -111221358 - L2 LINE L2 -36 3277 3182 1494 252 44 25 chr11 37562131 37562604 -111220868 + MER74B LTR ERVL 67 548 -74 1841 228 157 13 chr11 37562749 37563536 -111219936 - L2 LINE L2 -239 3074 2151 292 274 36 0 chr11 37565189 37565273 -111218199 - L2 LINE L2 -2 3270 3184 30 69 0 0 chr11 37567413 37567471 -111216001 + AT_rich Low_complexity Low_complexity 1 58 0 4208 103 12 8 chr11 37567471 37568073 -111215399 - L1PA13 LINE L1 -9 6154 5551 719 203 8 0 chr11 37568267 37568395 -111215077 + FLAM_C SINE Alu 5 133 0 5975 207 50 46 chr11 37568504 37569955 -111213517 + L1ME1 LINE L1 2 1457 -5083 * 8149 220 44 58 chr11 37569932 37570813 -111212659 + L1ME1 LINE L1 2885 3777 -2951 2301 101 0 3 chr11 37570813 37571111 -111212361 + AluY SINE Alu 1 297 -14 8149 220 44 58 chr11 37571111 37572119 -111211353 + L1ME1 LINE L1 3777 4798 -1930 1637 151 42 45 chr11 37572119 37572430 -111211042 + AluJb SINE Alu 1 310 -2 8149 220 44 58 chr11 37572430 37573036 -111210436 + L1ME1 LINE L1 4798 5411 -1317 291 28 0 0 chr11 37573036 37573072 -111210400 + (CAAAA)n Simple_repeat Simple_repeat 3 38 0 8149 220 44 58 chr11 37573072 37573541 -111209931 + L1ME1 LINE L1 5411 5885 -843 1939 159 35 40 chr11 37573541 37573918 -111209554 - THE1C LTR MaLR 0 375 1 8149 220 44 58 chr11 37573918 37574687 -111208785 + L1ME1 LINE L1 5885 6725 -3 23 33 0 0 chr11 37574979 37575009 -111208463 + AT_rich Low_complexity Low_complexity 1 30 0 2209 46 0 0 chr11 37575508 37575770 -111207702 - L1PA5 LINE L1 -4 6150 5889 606 284 96 19 chr11 37576313 37576521 -111206951 + MER58A DNA MER1_type 1 224 0 300 323 10 0 chr11 37577057 37577153 -111206319 + (ATGGTG)n Simple_repeat Simple_repeat 2 98 0 34 0 0 0 chr11 37577414 37577448 -111206024 + AT_rich Low_complexity Low_complexity 1 34 0 180 364 58 8 chr11 37578443 37578564 -111204908 - L2 LINE L2 0 3272 3146 * 187 369 35 0 chr11 37578556 37578697 -111204775 - MIR SINE MIR -15 247 102 490 227 0 15 chr11 37579949 37580081 -111203391 + L1MB4 LINE L1 6047 6176 -4 537 225 53 137 chr11 37580311 37580596 -111202876 - MIR SINE MIR 0 262 2 320 321 14 21 chr11 37581309 37581449 -111202023 + (TGGA)n Simple_repeat Simple_repeat 4 142 0 385 313 7 14 chr11 37581481 37581628 -111201844 + (TGGA)n Simple_repeat Simple_repeat 1 146 0 198 143 0 0 chr11 37581655 37581690 -111201782 + (TGGA)n Simple_repeat Simple_repeat 3 37 0 1962 148 7 3 chr11 37584013 37584304 -111199168 + AluSc SINE Alu 1 292 -17 2458 161 36 13 chr11 37584546 37585017 -111198455 + L1MA8 LINE L1 5807 6288 -3 666 274 80 5 chr11 37585119 37585331 -111198141 + MIR SINE MIR 34 261 -1 481 239 17 8 chr11 37585326 37585443 -111198029 - MIR SINE MIR -106 156 39 * 1545 217 18 15 chr11 37585662 37585999 -111197473 - MER58B DNA MER1_type -3 338 1 225 244 70 35 chr11 37586043 37586129 -111197343 - MIR SINE MIR -118 144 56 339 269 181 22 chr11 37587065 37587292 -111196180 - L1ME4a LINE L1 -16 6105 5843 383 293 105 0 chr11 37587529 37587662 -111195810 + MIR3 SINE MIR 53 199 -9 376 374 79 0 chr11 37588387 37588614 -111194858 - MIR SINE MIR -4 258 14 517 267 114 14 chr11 37588895 37589105 -111194367 + MIR SINE MIR 32 262 0 372 272 26 18 chr11 37589105 37589219 -111194253 + MIR SINE MIR 11 125 -137 338 258 125 55 chr11 37589989 37590343 -111193129 + MLT1L LTR MaLR 176 577 -11 1244 204 0 5 chr11 37590846 37591067 -111192405 + AluJo SINE Alu 5 224 -88 277 120 40 0 chr11 37591067 37591117 -111192355 + Alu SINE Alu 247 300 0 186 105 0 53 chr11 37591117 37591155 -111192317 + (GAA)n Simple_repeat Simple_repeat 1 180 0 827 248 56 67 chr11 37591684 37592043 -111191429 + MLT1J2 LTR MaLR 94 448 -2 314 269 14 97 chr11 37592407 37592552 -111190920 - L1ME4a LINE L1 -2210 5598 5466 3978 133 28 49 chr11 37592571 37593325 -111190147 - L1MB2 LINE L1 -8 6163 5426 238 226 262 60 chr11 37593547 37593631 -111189841 - MIR SINE MIR -52 210 110 539 275 107 47 chr11 37593862 37594200 -111189272 + MLT1L LTR MaLR 249 606 -9 204 235 20 0 chr11 37595385 37595436 -111188036 + (TAG)n Simple_repeat Simple_repeat 2 53 0 21 0 0 0 chr11 37595461 37595482 -111187990 + AT_rich Low_complexity Low_complexity 1 21 0 653 262 20 0 chr11 37595484 37595633 -111187839 - MIR SINE MIR -77 185 34 3507 101 2 4 chr11 37595901 37596404 -111187068 + L1PA8 LINE L1 5667 6168 -4 294 287 0 11 chr11 37597270 37597357 -111186115 + MIR SINE MIR 46 131 -131 243 31 0 0 chr11 37597734 37597766 -111185706 - MADE1 DNA Mariner -48 32 1 226 314 25 16 chr11 37597952 37598073 -111185399 + GA-rich Low_complexity Low_complexity 2 123 0 288 0 0 0 chr11 37598960 37598992 -111184480 + (TG)n Simple_repeat Simple_repeat 1 32 0 929 143 39 73 chr11 37599108 37599367 -111184105 + L1MC5 LINE L1 7668 7917 -44 2342 93 0 3 chr11 37599381 37599681 -111183791 + AluSp SINE Alu 1 299 -14 867 239 29 17 chr11 37600151 37600389 -111183083 + MLT1J1 LTR MaLR 37 277 -169 2516 54 3 19 chr11 37600392 37600708 -111182764 + AluY SINE Alu 1 311 0 204 283 17 0 chr11 37601072 37601132 -111182340 - MIR SINE MIR -128 134 74 2331 100 0 10 chr11 37601368 37601678 -111181794 - AluY SINE Alu -4 307 1 432 280 85 74 chr11 37601805 37602169 -111181303 + MLT1I LTR MaLR 42 409 0 424 331 22 0 chr11 37602189 37602367 -111181105 - MER117 DNA MER1_type 0 197 16 750 312 15 0 chr11 37602378 37602580 -111180892 + L2 LINE L2 2753 2957 -357 273 315 11 11 chr11 37602693 37602782 -111180690 + L2 LINE L2 3224 3312 -1 227 314 116 16 chr11 37603736 37603857 -111179615 + MIR SINE MIR 124 256 -6 2033 144 0 0 chr11 37604124 37604437 -111179035 + MER1A DNA MER1_type 85 397 -132 9052 54 0 1 chr11 37604437 37605642 -111177830 + L1P LINE L1 3300 4503 -1643 558 96 48 10 chr11 37606030 37606134 -111177338 + L1P LINE L1 4512 4619 -1527 205 289 29 48 chr11 37606553 37606657 -111176815 + MIR SINE MIR 52 153 -109 441 265 152 13 chr11 37607169 37607320 -111176152 - MIR3 SINE MIR -18 190 19 480 269 113 35 chr11 37607681 37607937 -111175535 - L2 LINE L2 -5 3308 3033 402 21 0 0 chr11 37609570 37609617 -111173855 + (CA)n Simple_repeat Simple_repeat 2 48 0 289 120 80 0 chr11 37609849 37609899 -111173573 - MIR SINE MIR -69 193 140 288 133 0 0 chr11 37609905 37609950 -111173522 - MLT1C LTR MaLR -2 465 421 270 301 38 45 chr11 37609954 37610087 -111173385 - MIR SINE MIR -124 138 7 500 244 32 74 chr11 37610366 37610615 -111172857 - MIR SINE MIR 0 262 28 1175 175 39 4 chr11 37611772 37612029 -111171443 + L1MD3 LINE L1 7730 7995 0 706 257 18 12 chr11 37612104 37612275 -111171197 - MIR SINE MIR -46 216 45 242 246 0 43 chr11 37612369 37612438 -111171034 + MER96B DNA MER1_type? 1 66 -351 30 0 0 0 chr11 37612461 37612491 -111170981 + AT_rich Low_complexity Low_complexity 1 30 0 2691 80 15 8 chr11 37612611 37613011 -111170461 - L1PA10 LINE L1 -31 6137 5735 1354 92 0 0 chr11 37613019 37613192 -111170280 - AluY SINE Alu -17 294 122 333 0 0 0 chr11 37614231 37614268 -111169204 + (TG)n Simple_repeat Simple_repeat 1 37 0 1350 205 45 24 chr11 37615307 37615682 -111167790 - L1MB8 LINE L1 -2 6176 5794 341 191 15 0 chr11 37615767 37615835 -111167637 + MER3 DNA MER1_type 7 75 -134 216 345 66 56 chr11 37616036 37616233 -111167239 + L2 LINE L2 3069 3267 -5 243 224 129 12 chr11 37616850 37616935 -111166537 + L2 LINE L2 3182 3276 -37 339 200 71 0 chr11 37617211 37617281 -111166191 - MIR SINE MIR -139 123 49 255 250 25 25 chr11 37617552 37617632 -111165840 + CT-rich Low_complexity Low_complexity 1 80 0 273 344 75 62 chr11 37618414 37618798 -111164674 + L2 LINE L2 2829 3217 -55 245 180 45 0 chr11 37618799 37618888 -111164584 + (TA)n Simple_repeat Simple_repeat 1 93 0 2055 125 0 3 chr11 37618898 37619187 -111164285 - AluSq SINE Alu -25 288 1 21 36 0 0 chr11 37619287 37619315 -111164157 + AT_rich Low_complexity Low_complexity 1 28 0 397 231 46 38 chr11 37619459 37619739 -111163733 - L1M4 LINE L1 -3795 2849 2567 24 0 0 0 chr11 37619814 37619838 -111163634 + AT_rich Low_complexity Low_complexity 1 24 0 325 114 100 29 chr11 37619879 37619949 -111163523 - MADE1 DNA Mariner -1 79 5 435 307 79 33 chr11 37620100 37620429 -111163043 - HAL1 LINE L1 -740 1767 1424 387 271 8 8 chr11 37620543 37620665 -111162807 - L1ME3 LINE L1 -56 6106 5985 579 274 63 104 chr11 37620676 37621125 -111162347 - L1M4 LINE L1 -4885 1749 1203 235 291 111 0 chr11 37622034 37622095 -111161377 - L1ME4a LINE L1 -2 6119 6066 216 111 0 0 chr11 37622095 37622131 -111161341 + (CA)n Simple_repeat Simple_repeat 1 36 0 235 291 111 0 chr11 37622131 37622241 -111161231 - L1ME4a LINE L1 -55 6066 5929 597 305 60 40 chr11 37622746 37622995 -111160477 + MIR SINE MIR 3 256 -6 2004 129 41 0 chr11 37624005 37624300 -111159172 - AluSp SINE Alu -2 311 5 22 35 0 0 chr11 37624703 37624732 -111158740 + AT_rich Low_complexity Low_complexity 1 29 0 517 165 165 0 chr11 37624981 37625114 -111158358 + MER114 LTR ERV 1 155 -493 7479 26 0 2 chr11 37625116 37625817 -111157655 - L1PA3 LINE L1 0 6155 5493 2595 36 0 10 chr11 37625817 37626126 -111157346 - AluY SINE Alu -5 306 1 7479 26 0 2 chr11 37626126 37626800 -111156672 - L1PA3 LINE L1 -662 5493 4819 11492 36 1 0 chr11 37626801 37628254 -111155218 + L1P LINE L1 3331 4785 -1361 935 185 82 0 chr11 37628480 37628664 -111154808 + MIR SINE MIR 31 229 -33 836 238 42 0 chr11 37629526 37629715 -111153757 - MIR SINE MIR -26 236 40 293 295 157 19 chr11 37629716 37629926 -111153546 + L3 LINE CR1 703 941 -636 197 200 113 62 chr11 37631873 37631953 -111151519 + L3 LINE CR1 1257 1340 -237 305 302 12 0 chr11 37632515 37632601 -111150871 - L2 LINE L2 -1 3271 3185 2107 107 7 7 chr11 37633083 37633364 -111150108 - AluSp SINE Alu -32 281 1 310 227 0 0 chr11 37633683 37633749 -111149723 + Charlie8 DNA MER1_type 112 177 -2240 26 0 0 0 chr11 37633940 37633966 -111149506 + AT_rich Low_complexity Low_complexity 1 26 0 3881 146 82 40 chr11 37633975 37634833 -111148639 + L1MB3 LINE L1 5282 6175 -8 22 35 0 0 chr11 37635073 37635102 -111148370 + AT_rich Low_complexity Low_complexity 1 29 0 646 284 44 78 chr11 37635630 37636063 -111147409 - L1M4 LINE L1 -1239 4907 4490 257 262 47 47 chr11 37636072 37636179 -111147293 - L2 LINE L2 -80 3233 3127 183 369 115 25 chr11 37636923 37637357 -111146115 - L2 LINE L2 -611 2703 2231 1646 169 6 49 chr11 37638017 37638343 -111145129 - AluJo SINE Alu 0 312 1 2186 130 10 0 chr11 37639085 37639386 -111144086 + AluSx SINE Alu 1 304 -8 2185 212 43 69 chr11 37639775 37640444 -111143028 - MLT1E1 LTR MaLR 0 654 3 2404 115 0 0 chr11 37641603 37641915 -111141557 - AluSx SINE Alu 0 312 1 1623 182 38 7 chr11 37642751 37643042 -111140430 + AluJo SINE Alu 1 300 -12 857 200 42 50 chr11 37643456 37643696 -111139776 - L1M4 LINE L1 -3220 2926 2689 1909 169 135 17 chr11 37643696 37644052 -111139420 + MER47B DNA MER2_type 20 417 -1 2242 108 7 10 chr11 37644102 37644409 -111139063 - AluSg SINE Alu -4 306 1 222 300 14 0 chr11 37644497 37644567 -111138905 + (TATG)n Simple_repeat Simple_repeat 2 72 0 23 0 0 0 chr11 37645111 37645134 -111138338 + AT_rich Low_complexity Low_complexity 1 23 0 1140 177 59 5 chr11 37645417 37645637 -111137835 + MER46A DNA MER2_type 1 232 -4 4997 248 116 25 chr11 37646021 37647160 -111136312 - L1ME LINE L1 -1944 4997 3963 2063 142 0 3 chr11 37647160 37647462 -111136010 - AluSx SINE Alu -10 302 2 4997 248 116 25 chr11 37647462 37648776 -111134696 - L1ME LINE L1 -2978 3963 2221 3521 163 44 30 chr11 37648776 37649410 -111134062 - L1MB3 LINE L1 0 6183 5536 1473 178 73 4 chr11 37649410 37649685 -111133787 + AluJo SINE Alu 1 294 -18 3521 163 44 30 chr11 37649685 37649772 -111133700 - L1MB3 LINE L1 -647 5536 5452 4997 248 116 25 chr11 37649772 37650411 -111133061 - L1ME LINE L1 -4720 2221 1642 951 216 4 17 chr11 37650412 37650644 -111132828 - L1ME LINE L1 -6178 245 17 545 273 252 11 chr11 37651202 37651488 -111131984 - L2 LINE L2 -963 2351 1997 209 329 92 0 chr11 37652275 37652351 -111131121 - MIR3 SINE MIR -52 156 74 592 272 145 4 chr11 37653176 37653404 -111130068 + MIR SINE MIR 2 261 -1 217 319 196 28 chr11 37653885 37654170 -111129302 + L2 LINE L2 316 648 -2666 945 312 217 30 chr11 37654225 37655150 -111128322 + L2 LINE L2 1160 2257 -1057 397 328 53 21 chr11 37655204 37655393 -111128079 - MIR SINE MIR -19 243 49 294 393 14 7 chr11 37655445 37655590 -111127882 + L2 LINE L2 2433 2578 -736 783 174 168 0 chr11 37655596 37655757 -111127715 - MER20 DNA MER1_type 0 219 32 429 357 92 35 chr11 37655768 37656051 -111127421 + L2 LINE L2 2574 2872 -442 288 0 0 0 chr11 37656172 37656204 -111127268 + (CA)n Simple_repeat Simple_repeat 1 32 0 529 288 116 53 chr11 37656237 37656539 -111126933 + L2 LINE L2 2984 3304 -9 541 252 42 0 chr11 37657126 37657245 -111126227 - MIR3 SINE MIR -23 185 62 205 205 0 0 chr11 37657273 37657312 -111126160 + A-rich Low_complexity Low_complexity 1 39 0 375 231 9 28 chr11 37658670 37658778 -111124694 + LTR67 LTR ERVL 428 533 -24 1578 114 47 0 chr11 37660673 37660927 -111122545 + L1MA1 LINE L1 6037 6302 0 316 244 44 0 chr11 37662195 37662285 -111121187 + Charlie7 DNA MER1_type 8 101 -2511 209 154 26 64 chr11 37662308 37662386 -111121086 + (TATATG)n Simple_repeat Simple_repeat 2 76 0 268 278 32 40 chr11 37663653 37663779 -111119693 + LTR16B LTR ERVL 327 451 -13 233 98 24 0 chr11 37664090 37664131 -111119341 + (CA)n Simple_repeat Simple_repeat 1 42 0 209 260 41 27 chr11 37664601 37664674 -111118798 - MIR SINE MIR -125 137 64 682 185 11 118 chr11 37664748 37665026 -111118446 + MER57A LTR ERV1 64 261 -142 283 163 0 0 chr11 37665073 37665122 -111118350 + LTR54 LTR ERV1 427 475 -35 345 307 18 85 chr11 37665237 37665520 -111117952 - MLT1I LTR MaLR -2 407 144 22 0 0 0 chr11 37665795 37665817 -111117655 + AT_rich Low_complexity Low_complexity 1 22 0 610 278 26 0 chr11 37666619 37666770 -111116702 + MIR SINE MIR 12 166 -96 1304 204 26 0 chr11 37666847 37667117 -111116355 + AluJo SINE Alu 6 282 -30 1292 158 32 0 chr11 37667378 37667599 -111115873 - MLT1A1 LTR MaLR 0 365 138 186 359 19 9 chr11 37717687 37717793 -111065679 - MIR SINE MIR 0 262 156 317 317 106 0 chr11 37717836 37717959 -111065513 - MIR SINE MIR -119 143 8 412 366 11 11 chr11 37718707 37718882 -111064590 - MIR3 SINE MIR -24 184 10 224 57 0 29 chr11 37719026 37719061 -111064411 + (TC)n Simple_repeat Simple_repeat 1 34 0 439 273 102 40 chr11 37719322 37719498 -111063974 - MIR SINE MIR -35 227 41 336 288 102 34 chr11 37720083 37720260 -111063212 + L2 LINE L2 3084 3272 -41 201 159 0 0 chr11 37720989 37721033 -111062439 + (CA)n Simple_repeat Simple_repeat 1 44 0 559 249 24 41 chr11 37722022 37722191 -111061281 + MIR SINE MIR 90 255 -7 208 240 135 52 chr11 37722380 37722476 -111060996 + MIR SINE MIR 47 150 -112 213 350 98 0 chr11 37723456 37723579 -111059893 + MIR SINE MIR 36 170 -92 236 318 12 47 chr11 37723857 37723942 -111059530 - MIR SINE MIR -94 114 33 207 25 75 0 chr11 37725391 37725431 -111058041 + T-rich Low_complexity Low_complexity 2 44 0 321 357 78 0 chr11 37726400 37726529 -111056943 - MIR SINE MIR -67 195 57 180 0 0 0 chr11 37727202 37727222 -111056250 + (CTGGGG)n Simple_repeat Simple_repeat 1 20 0 1183 261 16 0 chr11 37729471 37729728 -111053744 - MIR SINE MIR 0 262 2 2342 64 0 7 chr11 37730803 37731100 -111052372 + AluSp SINE Alu 1 295 -18 1548 162 35 48 chr11 37731705 37732020 -111051452 - THE1C LTR MaLR -64 311 1 2727 203 23 63 chr11 37732037 37732789 -111050683 + L1ME1 LINE L1 5450 6331 -3 23 33 0 0 chr11 37733081 37733111 -111050361 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr11 37733592 37733613 -111049859 + (TA)n Simple_repeat Simple_repeat 2 22 0 2186 46 0 0 chr11 37733613 37733872 -111049600 - L1PA5 LINE L1 -7 6147 5889 594 289 96 19 chr11 37734415 37734623 -111048849 + MER58A DNA MER1_type 1 224 0 869 162 39 0 chr11 37735164 37735343 -111048129 + MER53 DNA DNA 2 187 -2 490 335 22 54 chr11 37736203 37736519 -111046953 + LTR16B LTR ERVL 9 314 -150 1815 179 57 7 chr11 37736539 37736884 -111046588 + MLT1A1 LTR MaLR 13 446 0 440 230 152 11 chr11 37738011 37738189 -111045283 - MER113 DNA MER1_type? -5 516 314 1631 161 0 28 chr11 37738208 37738499 -111044973 - AluJb SINE Alu -18 294 12 619 281 82 92 chr11 37738589 37739020 -111044452 + L2 LINE L2 2667 3146 -167 3986 28 2 0 chr11 37739020 37739478 -111043994 + L1PA5 LINE L1 5692 6150 -4 619 281 82 92 chr11 37739478 37739645 -111043827 + L2 LINE L2 3146 3313 0 1960 104 0 0 chr11 37739774 37740042 -111043430 + AluSx SINE Alu 40 307 -5 255 327 40 8 chr11 37741201 37741334 -111042138 - MIR SINE MIR -61 147 32 1264 248 132 62 chr11 37742440 37743000 -111040472 + MER45C DNA AcHobo 1 599 -354 241 163 20 20 chr11 37743023 37743072 -111040400 + MER45C DNA AcHobo 905 953 0 185 295 57 95 chr11 37743653 37743758 -111039714 - L2 LINE L2 -11 3302 3202 214 309 18 0 chr11 37744087 37744142 -111039330 - L2 LINE L2 -10 3262 3207 264 327 45 9 chr11 37744230 37744340 -111039132 + MIR SINE MIR 30 143 -65 252 128 26 0 chr11 37744469 37744508 -111038964 - MLT1C LTR MaLR -2 465 426 1162 29 50 0 chr11 37744509 37744648 -111038824 + AluY SINE Alu 151 296 -15 2417 166 51 0 chr11 37744648 37745063 -111038409 - MLT1C LTR MaLR -31 436 1 299 247 14 0 chr11 37745113 37745186 -111038286 + MER117 DNA MER1_type 5 78 -119 892 250 177 23 chr11 37746242 37746542 -111036930 + MLT1H LTR MaLR 195 540 -9 1791 178 0 7 chr11 37746977 37747263 -111036209 + AluJo SINE Alu 1 284 -28 365 258 91 15 chr11 37747575 37747707 -111035765 + MER117 DNA MER1_type 11 152 -45 570 265 95 16 chr11 37748463 37748652 -111034820 + MIR SINE MIR 47 250 -12 937 148 6 40 chr11 37748749 37748925 -111034547 + MLT1A1 LTR MaLR 1 170 -195 18264 91 13 20 chr11 37748927 37751565 -111031907 + L1P LINE L1 459 3077 -3069 1044 136 82 0 chr11 37751675 37751859 -111031613 + L1MA8 LINE L1 6090 6288 -3 666 274 80 5 chr11 37751961 37752173 -111031299 + MIR SINE MIR 34 261 -1 481 239 17 8 chr11 37752168 37752285 -111031187 - MIR SINE MIR -106 156 39 * 1545 217 18 15 chr11 37752503 37752840 -111030632 - MER58B DNA MER1_type -3 338 1 225 244 70 35 chr11 37752884 37752970 -111030502 - MIR SINE MIR -118 144 56 364 272 175 22 chr11 37753906 37754134 -111029338 - L1ME4a LINE L1 -16 6105 5843 383 293 105 0 chr11 37754371 37754504 -111028968 + MIR3 SINE MIR 53 199 -9 372 374 79 0 chr11 37755229 37755456 -111028016 - MIR SINE MIR -4 258 14 517 267 114 14 chr11 37755737 37755947 -111027525 + MIR SINE MIR 32 262 0 372 272 26 18 chr11 37755947 37756061 -111027411 + MIR SINE MIR 11 125 -137 338 258 125 55 chr11 37756831 37757185 -111026287 + MLT1L LTR MaLR 176 577 -11 277 190 7 4 chr11 37757688 37757961 -111025511 + AluJo SINE Alu 5 300 0 955 248 56 67 chr11 37758525 37758884 -111024588 + MLT1J2 LTR MaLR 94 448 -2 256 269 14 97 chr11 37759248 37759393 -111024079 - L1ME4a LINE L1 -2210 5598 5466 3989 142 27 49 chr11 37759412 37760165 -111023307 - L1MB2 LINE L1 -8 6163 5428 204 235 20 0 chr11 37760820 37760871 -111022601 + (TAG)n Simple_repeat Simple_repeat 2 53 0 587 278 19 0 chr11 37760907 37761069 -111022403 - MIR SINE MIR -64 198 34 3580 101 2 4 chr11 37761337 37761840 -111021632 + L1PA8 LINE L1 5667 6168 -4 270 287 0 11 chr11 37762703 37762790 -111020682 + MIR SINE MIR 46 131 -131 258 31 0 0 chr11 37763167 37763199 -111020273 + MADE1 DNA Mariner 49 80 0 226 314 25 16 chr11 37763385 37763506 -111019966 + GA-rich Low_complexity Low_complexity 2 123 0 288 0 0 0 chr11 37764392 37764424 -111019048 + (TG)n Simple_repeat Simple_repeat 1 32 0 1033 141 46 72 chr11 37764539 37764802 -111018670 + L1MC5 LINE L1 7668 7923 -38 2172 92 0 20 chr11 37764812 37765117 -111018355 + AluSp SINE Alu 1 299 -14 962 245 29 17 chr11 37765596 37765837 -111017635 + MLT1J1 LTR MaLR 37 280 -166 2533 57 3 19 chr11 37765837 37766153 -111017319 + AluY SINE Alu 1 311 0 184 283 17 0 chr11 37766515 37766575 -111016897 - MIR SINE MIR -128 134 74 2149 116 0 16 chr11 37766811 37767122 -111016350 - AluY SINE Alu -5 306 1 549 280 85 74 chr11 37767249 37767613 -111015859 + MLT1I LTR MaLR 42 409 0 468 335 22 0 chr11 37767633 37767815 -111015657 - MER117 DNA MER1_type 0 197 12 679 312 15 0 chr11 37767822 37768024 -111015448 + L2 LINE L2 2753 2957 -357 220 326 11 11 chr11 37768137 37768226 -111015246 + L2 LINE L2 3224 3312 -1 1882 73 8 0 chr11 37768742 37769031 -111014441 + L1PA6 LINE L1 5896 6186 0 1221 185 14 5 chr11 37769031 37769242 -111014230 + MLT1A1 LTR MaLR 147 359 -6 954 95 0 0 chr11 37769395 37769521 -111013951 - L1PA10 LINE L1 -540 5628 5503 3413 133 9 9 chr11 37769521 37770053 -111013419 + L1PA10 LINE L1 5614 6164 -4 283 247 144 31 chr11 37770601 37770698 -111012774 + MIR SINE MIR 96 203 -59 2310 83 3 0 chr11 37772487 37772776 -111010696 + AluSp SINE Alu 16 305 -8 388 246 110 8 chr11 37773729 37773847 -111009625 + MIR3 SINE MIR 51 180 -28 249 368 145 5 chr11 37774005 37774265 -111009207 + L2 LINE L2 2721 3017 -296 681 198 12 76 chr11 37774332 37774504 -111008968 + MER58B DNA MER1_type 181 341 0 289 314 64 29 chr11 37774520 37774692 -111008780 + L2 LINE L2 3118 3295 -18 1302 260 131 13 chr11 37775686 37776144 -111007328 + LTR33 LTR ERVL 3 514 -7 1702 308 37 31 chr11 37776787 37777494 -111005978 + ERVL LTR ERVL 3914 4624 -1140 1456 230 107 46 chr11 37777496 37778031 -111005441 - MLT1F1 LTR MaLR 0 567 17 1117 305 79 37 chr11 37778181 37778798 -111004674 + ERVL LTR ERVL 4738 5380 -384 614 286 152 0 chr11 37778989 37779199 -111004273 + LTR33 LTR ERVL 16 257 -264 180 364 58 8 chr11 37780344 37780465 -111003007 - L2 LINE L2 0 3272 3146 * 187 369 35 0 chr11 37780457 37780598 -111002874 - MIR SINE MIR -15 247 102 490 227 0 15 chr11 37781850 37781982 -111001490 + L1MB4 LINE L1 6047 6176 -4 537 225 53 137 chr11 37782212 37782497 -111000975 - MIR SINE MIR 0 262 2 320 321 14 21 chr11 37783210 37783350 -111000122 + (TGGA)n Simple_repeat Simple_repeat 4 142 0 385 313 7 14 chr11 37783382 37783529 -110999943 + (TGGA)n Simple_repeat Simple_repeat 1 146 0 198 143 0 0 chr11 37783556 37783591 -110999881 + (TGGA)n Simple_repeat Simple_repeat 3 37 0 1944 150 10 3 chr11 37785915 37786208 -110997264 + AluSx SINE Alu 1 295 -17 567 323 44 8 chr11 37786220 37786468 -110997004 - MIR SINE MIR -5 257 1 422 321 0 15 chr11 37788094 37788228 -110995244 + MIR3 SINE MIR 66 197 -11 181 204 56 0 chr11 37788487 37788541 -110994931 - MIR SINE MIR -127 135 79 183 306 0 12 chr11 37789328 37789413 -110994059 + MIR SINE MIR 66 149 -113 207 263 81 50 chr11 37789446 37789545 -110993927 - L2 LINE L2 -57 3256 3155 484 226 95 22 chr11 37790030 37790167 -110993305 + MER117 DNA MER1_type 6 152 -45 390 259 150 14 chr11 37791572 37791719 -110991753 - MIR3 SINE MIR -18 190 24 440 254 65 27 chr11 37792084 37792269 -110991203 - L2 LINE L2 -5 3308 3117 912 249 126 50 chr11 37793387 37793809 -110989663 - MLT1L LTR MaLR -69 546 93 184 340 21 52 chr11 37794918 37795109 -110988363 + L3b LINE CR1 1230 1414 -169 1372 185 14 25 chr11 37795297 37795573 -110987899 + AluJo SINE Alu 10 282 -30 376 287 37 9 chr11 37795600 37795708 -110987764 + L2 LINE L2 3180 3290 -23 680 126 72 11 chr11 37795837 37796103 -110987369 + (TCTA)n Simple_repeat Simple_repeat 1 282 0 629 299 58 18 chr11 37796881 37797105 -110986367 + MIR SINE MIR 14 246 -16 635 249 94 20 chr11 37798534 37798735 -110984737 + MIR SINE MIR 37 252 -10 377 259 102 9 chr11 37799401 37799509 -110983963 - L2 LINE L2 0 3272 3155 294 73 0 0 chr11 37799645 37799686 -110983786 + (CA)n Simple_repeat Simple_repeat 2 42 0 723 232 54 9 chr11 37800071 37800276 -110983196 + MIR SINE MIR 4 213 -49 429 312 70 30 chr11 37800285 37800484 -110982988 - MIR SINE MIR -9 253 47 752 202 0 66 chr11 37801154 37801337 -110982135 + MIR SINE MIR 84 254 -8 8414 111 6 27 chr11 37801828 37803156 -110980316 - HSMAR2 DNA Mariner -1 1301 2 389 291 8 8 chr11 37804113 37804230 -110979242 + MIR SINE MIR 6 122 -140 286 240 146 39 chr11 37804369 37804521 -110978951 + MIR SINE MIR 18 183 -60 200 186 68 17 chr11 37804711 37804770 -110978702 + MIR SINE MIR 98 159 -103 805 339 117 19 chr11 37805028 37805566 -110977906 - L2 LINE L2 0 3313 2722 312 280 42 59 chr11 37805577 37805695 -110977777 + L1ME4a LINE L1 5848 5963 -158 255 298 12 12 chr11 37805695 37805779 -110977693 + (TATG)n Simple_repeat Simple_repeat 2 85 0 2355 102 3 13 chr11 37806085 37806263 -110977209 - AluSx SINE Alu 0 312 137 2668 45 0 0 chr11 37806263 37806573 -110976899 - AluY SINE Alu -1 310 1 2355 102 3 13 chr11 37806573 37806709 -110976763 - AluSx SINE Alu -175 137 1 1031 197 10 10 chr11 37807996 37808204 -110975268 - MER3 DNA MER1_type -1 208 1 261 291 184 0 chr11 37808585 37808723 -110974749 - MIR SINE MIR -58 150 30 436 223 53 87 chr11 37810758 37810848 -110972624 - L2 LINE L2 -76 3237 3145 1436 139 13 13 chr11 37810848 37811078 -110972394 + MER30 DNA MER1_type 1 230 0 436 223 53 87 chr11 37811078 37811193 -110972279 - L2 LINE L2 -168 3145 3039 289 285 223 8 chr11 37811214 37811344 -110972128 - L2 LINE L2 -445 2869 2712 303 288 54 36 chr11 37811887 37811998 -110971474 - L1MC4 LINE L1 -1341 6701 6589 647 91 53 11 chr11 37811998 37812265 -110971207 + (TA)n Simple_repeat Simple_repeat 1 278 0 248 171 24 37 chr11 37812265 37812347 -110971125 + (CATATA)n Simple_repeat Simple_repeat 1 81 0 274 325 32 57 chr11 37813450 37813573 -110969899 - L2 LINE L2 -16 3256 3137 308 244 73 155 chr11 37815165 37815481 -110967991 - L2 LINE L2 -1 3312 3023 248 28 56 0 chr11 37815818 37815854 -110967618 + (TCCA)n Simple_repeat Simple_repeat 3 40 0 323 222 156 0 chr11 37816734 37816824 -110966648 + L2 LINE L2 3169 3272 0 2256 125 0 3 chr11 37817222 37817525 -110965947 + AluSx SINE Alu 1 302 -10 981 226 120 32 chr11 37817634 37818068 -110965404 + MER113 DNA MER1_type? 5 476 -45 843 117 0 0 chr11 37818125 37818236 -110965236 - FLAM_C SINE Alu -32 111 1 194 300 178 22 chr11 37818553 37818643 -110964829 + MIR SINE MIR 40 143 -65 2105 135 0 0 chr11 37818887 37819183 -110964289 + AluSx SINE Alu 1 296 -16 308 219 187 61 chr11 37819697 37819878 -110963594 - MIR SINE MIR -13 249 37 935 62 78 0 chr11 37820734 37820863 -110962609 + MER85 DNA T2_type 1 139 0 220 297 40 14 chr11 37822059 37822133 -110961339 - L2 LINE L2 -6 3266 3191 337 234 187 9 chr11 37822176 37822283 -110961189 - L2 LINE L2 0 3313 3188 201 74 0 0 chr11 37823015 37823042 -110960430 + (T)n Simple_repeat Simple_repeat 1 27 0 1427 116 65 0 chr11 37823382 37823598 -110959874 + MER30 DNA MER1_type 1 230 0 713 305 111 29 chr11 37826340 37826681 -110956791 - L3 LINE CR1 -2 1575 1207 316 336 71 0 chr11 37826658 37826798 -110956674 + MIR3 SINE MIR 48 197 -11 * 297 318 45 0 chr11 37828803 37828891 -110954581 - L2 LINE L2 -48 3224 3133 2073 69 66 31 chr11 37828928 37829216 -110954256 + AluY SINE Alu 1 298 -13 249 57 0 0 chr11 37830166 37830201 -110953271 + (T)n Simple_repeat Simple_repeat 1 35 0 278 379 26 0 chr11 37834483 37834599 -110948873 + MIR3 SINE MIR 63 181 -27 24 32 0 0 chr11 37840552 37840583 -110942889 + AT_rich Low_complexity Low_complexity 1 31 0 1542 155 3 23 chr11 37840583 37840887 -110942585 - L1P LINE L1 -3091 3055 2758 320 77 19 0 chr11 37841892 37841944 -110941528 + (TG)n Simple_repeat Simple_repeat 2 54 0 325 219 14 0 chr11 37841998 37842071 -110941401 - MER116 DNA Mariner -2 78 5 965 68 0 0 chr11 37842634 37842752 -110940720 - AluSp/q SINE Alu -19 294 177 2306 93 10 0 chr11 37843064 37843355 -110940117 - AluSx SINE Alu -18 294 1 1709 134 0 4 chr11 37843648 37843894 -110939578 + AluSx SINE Alu 49 293 -19 452 86 14 0 chr11 37843920 37843990 -110939482 + (ATGGTG)n Simple_repeat Simple_repeat 5 75 0 1013 196 11 16 chr11 37845236 37845425 -110938047 - MER5A DNA MER1_type -1 188 1 542 268 91 27 chr11 37845492 37845712 -110937760 + MIR SINE MIR 2 235 -27 275 254 0 30 chr11 37845711 37845778 -110937694 - MIR SINE MIR -1 261 197 * 292 161 0 149 chr11 37845778 37845833 -110937639 - MER116 DNA Mariner 0 80 41 2248 90 33 7 chr11 37845833 37846134 -110937338 + AluSg SINE Alu 1 309 -1 292 161 0 149 chr11 37846134 37846165 -110937307 - MER116 DNA Mariner -39 41 7 643 258 0 25 chr11 37846169 37846332 -110937140 - MIR SINE MIR -63 199 41 351 227 30 75 chr11 37846784 37846904 -110936568 + MIR SINE MIR 70 183 -58 529 242 158 42 chr11 37846988 37847153 -110936319 + MER5A DNA MER1_type 1 184 -5 21 36 0 0 chr11 37847499 37847527 -110935945 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr11 37848157 37848188 -110935284 + AT_rich Low_complexity Low_complexity 1 31 0 910 123 0 23 chr11 37848188 37848318 -110935154 - FLAM_C SINE Alu -5 128 2 2097 119 0 0 chr11 37848567 37848844 -110934628 - AluSc SINE Alu -18 291 15 448 243 200 7 chr11 37848921 37849061 -110934411 - MER5A DNA MER1_type -14 175 9 379 332 56 31 chr11 37849116 37849312 -110934160 - MIR SINE MIR -60 202 2 2292 95 20 0 chr11 37850995 37851290 -110932182 - AluSg SINE Alu -9 301 1 258 167 202 24 chr11 37851382 37851466 -110932006 - L1ME LINE L1 -269 5852 5754 471 230 182 7 chr11 37852035 37852183 -110931289 + MER5A DNA MER1_type 9 182 -7 253 68 45 0 chr11 37852822 37852866 -110930606 + (TA)n Simple_repeat Simple_repeat 1 46 0 219 371 32 24 chr11 37854146 37854270 -110929202 - L2 LINE L2 -1 3271 3147 202 233 0 0 chr11 37854298 37854341 -110929131 - MIR SINE MIR -8 254 212 1718 119 36 25 chr11 37854685 37854995 -110928477 + AluJb SINE Alu 1 313 0 1302 149 40 0 chr11 37855251 37855452 -110928020 + MER3 DNA MER1_type 1 209 0 2033 131 10 0 chr11 37855766 37856085 -110927387 + AluSx SINE Alu 1 322 0 342 305 84 38 chr11 37856087 37856218 -110927254 + MIR3 SINE MIR 41 177 -31 212 231 0 0 chr11 37856795 37856834 -110926638 - MIR SINE MIR -18 244 206 466 228 16 24 chr11 37856964 37857091 -110926381 - MIR SINE MIR -87 175 50 2144 117 9 25 chr11 37857104 37857421 -110926051 - AluSx SINE Alu 0 312 1 1974 153 0 0 chr11 37857423 37857717 -110925755 - AluJb SINE Alu -18 294 1 630 255 25 30 chr11 37858033 37858244 -110925228 + MIR SINE MIR 1 214 -48 449 227 29 143 chr11 37858804 37858967 -110924505 + MIR SINE MIR 20 141 -121 831 155 20 90 chr11 37858967 37859167 -110924305 - MER5A DNA MER1_type -3 186 1 449 227 29 143 chr11 37859167 37859276 -110924196 + MIR SINE MIR 141 261 -1 189 94 0 0 chr11 37860434 37860466 -110923006 + (T)n Simple_repeat Simple_repeat 1 32 0 202 274 0 0 chr11 37861270 37861321 -110922151 + CT-rich Low_complexity Low_complexity 2 52 0 5095 252 65 40 chr11 37862922 37863428 -110920044 + HAL1 LINE L1 1 493 -2014 1699 178 16 10 chr11 37863428 37863737 -110919735 + AluJb SINE Alu 1 311 -1 5095 252 65 40 chr11 37863737 37865045 -110918427 + HAL1 LINE L1 493 1859 -648 1497 247 116 49 chr11 37865131 37865642 -110917830 - MLT1H LTR MaLR 0 549 5 367 279 177 14 chr11 37865827 37866042 -110917430 + MIR SINE MIR 7 256 -6 214 309 73 9 chr11 37866513 37866623 -110916849 - MIR SINE MIR -129 133 17 604 282 47 0 chr11 37867202 37867372 -110916100 + MIR SINE MIR 32 209 -53 244 190 0 127 chr11 37868817 37868896 -110914576 - L2 LINE L2 0 3272 3204 266 254 0 16 chr11 37868980 37869043 -110914429 - MIR SINE MIR -17 245 184 * 366 238 183 0 chr11 37869026 37869152 -110914320 + MIR SINE MIR 82 230 -32 437 266 114 13 chr11 37869189 37869347 -110914125 - MIR SINE MIR -87 175 2 318 192 192 0 chr11 37870387 37870460 -110913012 - Tigger5 DNA MER2_type 0 2323 2237 282 214 0 18 chr11 37870470 37870526 -110912946 - Tigger5 DNA MER2_type -2268 55 1 1857 151 10 0 chr11 37870639 37870931 -110912541 + AluSx SINE Alu 5 299 -13 204 283 40 61 chr11 37871057 37871156 -110912316 + L2 LINE L2 3173 3269 -3 226 348 56 44 chr11 37871511 37871830 -110911642 + HAL1 LINE L1 1 323 -2184 286 296 229 22 chr11 37872048 37872227 -110911245 + MIR SINE MIR 38 253 -9 525 318 31 10 chr11 37872785 37872977 -110910495 - MLT1I LTR MaLR -29 380 185 1475 170 55 19 chr11 37873627 37873918 -110909554 + AluSx SINE Alu 1 301 0 671 243 79 126 chr11 37874309 37874737 -110908735 + MLT1I LTR MaLR 1 408 -1 299 314 25 0 chr11 37874740 37874861 -110908611 - MER117 DNA MER1_type 0 197 74 417 235 0 0 chr11 37875306 37875387 -110908085 + MIR SINE MIR 108 188 -74 763 268 74 16 chr11 37875438 37875822 -110907650 + LTR16A1 LTR ERVL 3 457 0 27 73 0 0 chr11 37875822 37875877 -110907595 + AT_rich Low_complexity Low_complexity 1 55 0 183 186 0 0 chr11 37876657 37876700 -110906772 + (ATG)n Simple_repeat Simple_repeat 1 43 0 414 277 136 16 chr11 37876701 37876885 -110906587 - MIR SINE MIR -5 257 52 1339 215 68 24 chr11 37877999 37878338 -110905134 + MLT1A1 LTR MaLR 1 354 -11 488 274 52 41 chr11 37879247 37879517 -110903955 + L1ME3A LINE L1 5677 5949 -221 226 335 50 55 chr11 37879871 37880053 -110903419 - MIR3 SINE MIR -17 191 11 1148 233 84 23 chr11 37880881 37881225 -110902247 + MLT1I LTR MaLR 3 367 -42 458 291 81 12 chr11 37886281 37886453 -110897019 - MIR3 SINE MIR -23 185 2 2179 105 3 16 chr11 37888891 37889197 -110894275 + AluY SINE Alu 1 302 -9 216 307 13 0 chr11 37889729 37889804 -110893668 - MIR SINE MIR -13 249 174 440 191 61 35 chr11 37893233 37893348 -110890124 - L2 LINE L2 -4 3309 3192 2296 96 0 7 chr11 37893415 37893717 -110889755 + AluSp SINE Alu 1 300 -13 241 309 15 0 chr11 37894008 37894076 -110889396 + L2 LINE L2 3239 3307 -6 1958 83 20 0 chr11 37895177 37895431 -110888041 - AluY SINE Alu -9 302 44 753 300 25 12 chr11 37896026 37896269 -110887203 + MIR SINE MIR 2 247 -15 684 248 74 45 chr11 37897443 37897685 -110885787 + MIR SINE MIR 11 259 -3 25 0 0 0 chr11 37897693 37897718 -110885754 + AT_rich Low_complexity Low_complexity 1 25 0 3202 102 15 11 chr11 37897955 37898418 -110885054 + MER4C LTR ERV1 1 465 0 219 231 0 0 chr11 37898544 37898583 -110884889 + (ATGGTG)n Simple_repeat Simple_repeat 2 40 0 1880 144 47 0 chr11 37898626 37898924 -110884548 + AluSx SINE Alu 1 312 0 409 281 64 12 chr11 37898936 37899107 -110884365 - MIR SINE MIR -55 207 28 279 241 60 12 chr11 37899121 37899204 -110884268 + MIR SINE MIR 17 103 -159 2154 151 14 27 chr11 37899204 37899574 -110883898 + MLT1A1 LTR MaLR 1 365 0 2029 130 11 0 chr11 37900059 37900343 -110883129 + AluSx SINE Alu 1 287 -25 21 57 0 0 chr11 37900353 37900388 -110883084 + AT_rich Low_complexity Low_complexity 1 35 0 200 284 40 27 chr11 37900704 37900778 -110882694 - L2 LINE L2 0 3313 3239 239 352 57 0 chr11 37901068 37901173 -110882299 - L2 LINE L2 -463 2851 2741 690 355 96 18 chr11 37901292 37901829 -110881643 - L2 LINE L2 -785 2529 2035 1803 130 0 4 chr11 37901829 37902083 -110881389 + AluSg SINE Alu 37 289 -21 690 355 96 18 chr11 37902083 37902508 -110880964 - L2 LINE L2 -1279 2035 1492 436 163 0 0 chr11 37903297 37903377 -110880095 - MER116 DNA Mariner 0 80 1 203 305 195 17 chr11 37903559 37903733 -110879739 + MIR SINE MIR 8 212 -50 205 313 0 0 chr11 37903911 37903978 -110879494 + L2 LINE L2 3175 3241 -72 231 114 0 0 chr11 37904793 37904828 -110878644 + (TG)n Simple_repeat Simple_repeat 2 36 0 623 305 52 0 chr11 37904885 37905095 -110878377 + MIR SINE MIR 39 259 -3 385 218 0 19 chr11 37905225 37905359 -110878113 + MER5A DNA MER1_type 1 183 -6 366 248 120 0 chr11 37906419 37906544 -110876928 - MIR3 SINE MIR -62 146 7 22 0 0 0 chr11 37906678 37906700 -110876772 + AT_rich Low_complexity Low_complexity 1 22 0 1129 185 141 71 chr11 37907091 37907431 -110876041 - MLT1A1 LTR MaLR 0 365 2 202 284 25 25 chr11 37907555 37907636 -110875836 + MIR SINE MIR 59 139 -123 21 0 0 0 chr11 37907785 37907806 -110875666 + AT_rich Low_complexity Low_complexity 1 21 0 2228 87 0 11 chr11 37908495 37908781 -110874691 - AluSp SINE Alu -1 312 30 2224 118 0 0 chr11 37908968 37909264 -110874208 + AluSx SINE Alu 1 296 -16 230 284 31 63 chr11 37909748 37909875 -110873597 + L2 LINE L2 2924 3046 -226 390 250 129 8 chr11 37909949 37910081 -110873391 + MIR SINE MIR 97 244 -18 1078 244 57 51 chr11 37910197 37910389 -110873083 - L1ME1 LINE L1 -5 6161 5965 2155 134 0 3 chr11 37910389 37910694 -110872778 - AluSx SINE Alu -8 304 1 1078 244 57 51 chr11 37910694 37910854 -110872618 - L1ME1 LINE L1 -201 5965 5807 700 254 51 10 chr11 37912534 37912731 -110870741 + MIR SINE MIR 32 236 -26 233 273 91 49 chr11 37913273 37913416 -110870056 - MIR SINE MIR -80 182 34 226 158 0 0 chr11 37914237 37914275 -110869197 - MIR SINE MIR -108 154 117 216 0 0 0 chr11 37914319 37914343 -110869129 + (TA)n Simple_repeat Simple_repeat 1 24 0 615 296 30 5 chr11 37914383 37914582 -110868890 + MIR SINE MIR 2 205 -57 187 305 0 63 chr11 37914646 37914741 -110868731 + MIR3 SINE MIR 111 199 -9 225 0 0 0 chr11 37914775 37914800 -110868672 + (TG)n Simple_repeat Simple_repeat 2 26 0 274 341 16 0 chr11 37915453 37915576 -110867896 + MIR SINE MIR 53 177 -85 186 265 20 0 chr11 37916075 37916124 -110867348 - MIR SINE MIR -59 149 100 268 290 24 48 chr11 37916630 37916754 -110866718 + MIR SINE MIR 71 191 -71 500 306 100 30 chr11 37920248 37920693 -110862779 + L1ME4a LINE L1 5435 5908 -213 2202 139 0 0 chr11 37921484 37921793 -110861679 - AluSx SINE Alu -3 309 1 237 33 0 0 chr11 37923210 37923240 -110860232 + (GA)n Simple_repeat Simple_repeat 1 30 0 356 362 18 0 chr11 37923350 37923513 -110859959 - MIR SINE MIR -26 236 71 188 261 0 0 chr11 37924132 37924178 -110859294 - MIR SINE MIR -113 149 104 188 33 0 33 chr11 37925259 37925289 -110858183 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1448 181 21 42 chr11 37925293 37925581 -110857891 - AluJo SINE Alu -16 286 5 322 274 84 17 chr11 37926134 37926280 -110857192 + MER5A DNA MER1_type 14 186 -3 198 296 51 41 chr11 37926197 37926295 -110857177 - MER5A DNA MER1_type -87 102 4 * 202 351 36 24 chr11 37926747 37926912 -110856560 + L2 LINE L2 2741 2907 -407 376 238 90 25 chr11 37927146 37927268 -110856204 + L2 LINE L2 3138 3267 -5 2359 156 73 26 chr11 37927285 37927748 -110855724 + MER31A LTR ERV1 1 485 0 271 222 16 0 chr11 37928044 37928107 -110855365 + MIR SINE MIR 194 257 -5 381 271 53 0 chr11 37928112 37928245 -110855227 - MIR SINE MIR -75 187 48 437 301 45 17 chr11 37928287 37928463 -110855009 + MIR SINE MIR 79 259 -3 30 27 0 0 chr11 37928553 37928590 -110854882 + AT_rich Low_complexity Low_complexity 1 37 0 2084 102 4 4 chr11 37929293 37929559 -110853913 + AluSg SINE Alu 5 270 -40 189 0 0 0 chr11 37929565 37929586 -110853886 + (TC)n Simple_repeat Simple_repeat 2 22 0 240 35 0 0 chr11 37929603 37929632 -110853840 + (TA)n Simple_repeat Simple_repeat 1 29 0 490 65 0 0 chr11 37930508 37930569 -110852903 - MADE1 DNA Mariner 0 80 20 1654 213 30 11 chr11 37930569 37930923 -110852549 + MLT1A1 LTR MaLR 3 364 -1 1900 145 0 30 chr11 37930966 37931263 -110852209 + AluJb SINE Alu 2 289 -23 23 33 0 0 chr11 37931272 37931302 -110852170 + AT_rich Low_complexity Low_complexity 1 30 0 861 174 64 6 chr11 37931311 37931483 -110851989 + MLT1A1 LTR MaLR 184 365 0 380 286 11 0 chr11 37931489 37931580 -110851892 - MER58 DNA MER1_type -249 92 1 23 0 0 0 chr11 37932568 37932591 -110850881 + AT_rich Low_complexity Low_complexity 1 23 0 726 168 37 47 chr11 37934969 37935160 -110848312 + MER53 DNA DNA 1 189 0 550 273 59 11 chr11 37935540 37935727 -110847745 - MIR SINE MIR -39 223 28 1688 163 179 8 chr11 37936709 37937101 -110846371 - L1MA4A LINE L1 -23 6280 5822 229 340 77 0 chr11 37937779 37937935 -110845537 - MIR3 SINE MIR -7 201 34 1048 220 79 26 chr11 37938654 37939000 -110844472 - MSTD LTR MaLR 0 396 1 244 268 32 76 chr11 37941117 37941274 -110842198 + L1MC/D LINE L1 5527 5676 -2132 2209 118 20 0 chr11 37941385 37941691 -110841781 - AluSx SINE Alu 0 312 1 211 292 125 17 chr11 37941874 37941994 -110841478 - MER5B DNA MER1_type -45 133 1 417 39 0 0 chr11 37942103 37942154 -110841318 + (GA)n Simple_repeat Simple_repeat 1 51 0 1300 197 157 10 chr11 37942807 37943107 -110840365 + MER2 DNA MER2_type 2 345 0 2301 105 0 0 chr11 37944664 37944958 -110838514 + AluSg SINE Alu 1 294 -16 230 81 27 0 chr11 37945002 37945039 -110838433 + (TTTTC)n Simple_repeat Simple_repeat 3 40 0 2274 122 0 3 chr11 37945743 37946055 -110837417 + AluSq SINE Alu 1 311 -2 261 298 48 0 chr11 37947238 37947322 -110836150 + MER5A DNA MER1_type 3 90 -99 199 244 154 26 chr11 37948042 37948120 -110835352 - MIR SINE MIR -155 107 20 22 0 0 0 chr11 37948289 37948311 -110835161 + AT_rich Low_complexity Low_complexity 1 22 0 255 286 13 13 chr11 37948843 37948920 -110834552 + MIR SINE MIR 11 87 -175 212 179 0 0 chr11 37950324 37950363 -110833109 + (TATAA)n Simple_repeat Simple_repeat 1 39 0 200 265 0 0 chr11 37950483 37950532 -110832940 - MIR SINE MIR -4 258 210 183 363 88 0 chr11 37950772 37950863 -110832609 + L2 LINE L2 3134 3232 -40 543 328 74 14 chr11 37950981 37951160 -110832312 - L2 LINE L2 -3 3310 3105 2746 88 11 16 chr11 37951160 37951537 -110831935 - THE1C LTR MaLR 0 375 1 543 328 74 14 chr11 37951537 37951653 -110831819 - L2 LINE L2 -208 3105 2997 232 259 0 0 chr11 37953497 37953555 -110829917 + MIR SINE MIR 30 87 -121 226 299 126 0 chr11 37953700 37953787 -110829685 + MIR3 SINE MIR 111 208 0 426 323 80 51 chr11 37955426 37955739 -110827733 + L2 LINE L2 2951 3272 0 2369 108 0 3 chr11 37955912 37956217 -110827255 + AluSq SINE Alu 1 304 -9 333 314 8 0 chr11 37957378 37957496 -110825976 + L1ME3A LINE L1 6052 6170 0 257 306 12 0 chr11 37957982 37958067 -110825405 - MIR SINE MIR -112 150 65 667 310 9 0 chr11 37958601 37958814 -110824658 - MIR SINE MIR -6 256 42 3808 118 68 5 chr11 37959151 37959769 -110823703 + L1MC1 LINE L1 5662 6318 -15 256 367 8 8 chr11 37959802 37959922 -110823550 - MER5A DNA MER1_type -52 137 18 460 306 18 18 chr11 37959934 37960104 -110823368 - L3 LINE CR1 -115 1462 1293 601 287 37 28 chr11 37960114 37960330 -110823142 - MIR SINE MIR -37 225 8 2085 207 30 45 chr11 37960703 37961211 -110822261 + MLT1D LTR MaLR 2 501 -4 198 274 0 0 chr11 37962732 37962783 -110820689 + L2 LINE L2 3218 3268 -4 2096 128 0 13 chr11 37963366 37963671 -110819801 + AluSx SINE Alu 5 305 -7 1962 135 3 57 chr11 37963884 37964202 -110819270 - AluSx SINE Alu -3 309 9 488 274 16 89 chr11 37964311 37964501 -110818971 + Charlie8 DNA MER1_type 185 360 -2057 540 0 0 0 chr11 37965046 37965106 -110818366 + (TTTTG)n Simple_repeat Simple_repeat 1 60 0 257 212 204 9 chr11 37965137 37965250 -110818222 - MIR SINE MIR -94 168 34 880 127 16 0 chr11 37965921 37966047 -110817425 + AluJb SINE Alu 10 137 -175 39 22 0 0 chr11 37966068 37966114 -110817358 + AT_rich Low_complexity Low_complexity 1 46 0 2904 78 8 0 chr11 37966181 37966567 -110816905 + L1PA10 LINE L1 5776 6164 -4 251 218 195 23 chr11 37966810 37966897 -110816575 - MIR SINE MIR -98 164 63 437 145 0 14 chr11 37967048 37967117 -110816355 + MER58 DNA MER1_type 2353 2420 0 292 248 53 9 chr11 37967931 37968044 -110815428 + MIR3 SINE MIR 68 185 -23 213 240 0 0 chr11 37968141 37968191 -110815281 + (TTA)n Simple_repeat Simple_repeat 3 52 0 197 271 0 0 chr11 37968211 37968259 -110815213 - MIR SINE MIR 0 262 215 1042 184 104 0 chr11 37968312 37968513 -110814959 + MER58A DNA MER1_type 1 222 -2 1004 293 109 18 chr11 37968663 37969049 -110814423 + MLT1K LTR MaLR 158 578 -10 249 185 93 0 chr11 37969085 37969139 -110814333 - MIR SINE MIR -107 101 43 201 121 0 0 chr11 37969899 37969932 -110813540 + (TGGA)n Simple_repeat Simple_repeat 1 33 0 271 340 0 10 chr11 37970748 37970851 -110812621 + MIR SINE MIR 45 146 -116 29 0 0 0 chr11 37971705 37971734 -110811738 + AT_rich Low_complexity Low_complexity 1 29 0 633 248 122 62 chr11 37971813 37972297 -110811175 + L1MC4a LINE L1 5437 5949 -1859 200 57 0 29 chr11 37972745 37972780 -110810692 + (TTG)n Simple_repeat Simple_repeat 2 35 0 1022 155 0 23 chr11 37972871 37973045 -110810427 + AluJb SINE Alu 137 306 -6 3396 120 12 6 chr11 37973415 37973924 -110809548 + MER41E LTR ERV1 1 512 0 312 167 0 0 chr11 37974018 37974090 -110809382 + (CA)n Simple_repeat Simple_repeat 1 72 0 779 250 259 6 chr11 37974341 37974677 -110808795 - L2 LINE L2 0 3313 2893 541 271 0 53 chr11 37976084 37976283 -110807189 - MIR SINE MIR -32 230 46 1187 59 13 0 chr11 37976291 37976444 -110807028 - L1PA7 LINE L1 0 6154 6000 581 248 29 78 chr11 37977642 37977848 -110805624 + MER117 DNA MER1_type 2 197 0 768 164 0 23 chr11 37977975 37978103 -110805369 - FLAM_C SINE Alu -17 126 2 2242 106 3 3 chr11 37978842 37979145 -110804327 + AluSx SINE Alu 1 303 -9 478 290 0 14 chr11 37980163 37980301 -110803171 + MIR3 SINE MIR 25 160 -48 489 264 75 33 chr11 37980577 37980789 -110802683 - MIR SINE MIR -9 253 33 236 260 0 0 chr11 37981299 37981349 -110802123 - MIR SINE MIR 0 262 213 278 371 8 30 chr11 37981383 37981515 -110801957 - MIR SINE MIR -63 145 17 405 279 55 58 chr11 37981728 37981855 -110801617 + L1ME4a LINE L1 5814 5940 -181 2183 139 0 0 chr11 37981855 37982165 -110801307 - AluSg SINE Alu 0 310 1 405 279 55 58 chr11 37982165 37982345 -110801127 + L1ME4a LINE L1 5940 6120 -1 276 197 13 26 chr11 37983251 37983327 -110800145 + HsTC2 DNA Tc2 4 78 -1820 327 250 24 0 chr11 37983557 37983641 -110799831 + L2 LINE L2 2971 3056 -216 1373 198 6 55 chr11 37984401 37984729 -110798743 + AluJo SINE Alu 1 312 0 367 124 168 7 chr11 37984791 37984917 -110798555 + MER20 DNA MER1_type 1 218 -1 236 284 14 0 chr11 37985142 37985216 -110798256 + HsTC2 DNA Tc2 5 79 -1819 2337 111 0 13 chr11 37985834 37986140 -110797332 + AluSx SINE Alu 1 302 -10 220 244 56 78 chr11 37986156 37986246 -110797226 + MIR SINE MIR 89 176 -86 2019 124 0 54 chr11 37987191 37987505 -110795967 + AluSg SINE Alu 1 297 -13 226 332 45 14 chr11 37987675 37987895 -110795577 + L1ME4a LINE L1 5592 5818 -303 2003 149 0 0 chr11 37988096 37988385 -110795087 + AluSc SINE Alu 1 289 -20 361 254 65 22 chr11 37988458 37988596 -110794876 + L1ME4a LINE L1 5972 6115 -6 2101 152 0 0 chr11 37991103 37991413 -110792059 - AluSx SINE Alu -2 310 1 542 192 108 8 chr11 37991438 37991568 -110791904 - MER103 DNA DNA -8 158 16 1781 164 7 17 chr11 37991932 37992230 -110791242 + AluJb SINE Alu 1 295 -17 568 306 19 24 chr11 37992667 37992873 -110790599 + MIR SINE MIR 32 236 -26 644 270 107 0 chr11 37993124 37993339 -110790133 - MIR SINE MIR -1 261 24 270 344 86 0 chr11 37993871 37993999 -110789473 - MIR SINE MIR -77 185 47 449 304 149 0 chr11 37994818 37995012 -110788460 + MIR SINE MIR 40 262 0 362 246 90 15 chr11 37995046 37995180 -110788292 - MIR SINE MIR -12 250 107 257 204 0 0 chr11 37995275 37995329 -110788143 - MIR SINE MIR -110 152 99 243 274 32 0 chr11 37995670 37995732 -110787740 + LTR16C LTR ERVL 428 491 0 1117 189 14 27 chr11 37996077 37996299 -110787173 + MER20 DNA MER1_type 1 219 0 242 187 67 40 chr11 37996418 37996493 -110786979 + MLT1I LTR MaLR 59 135 -274 1502 270 62 19 chr11 37996498 37996964 -110786508 + LTR16C LTR ERVL 6 491 0 554 287 78 41 chr11 37996965 37997233 -110786239 + MLT1I LTR MaLR 132 409 0 1501 269 42 8 chr11 37997943 37998415 -110785057 + MER113 DNA MER1_type? 1 488 -33 580 221 27 27 chr11 37998514 37998663 -110784809 + MIR SINE MIR 23 171 -91 224 281 101 0 chr11 37998729 37998818 -110784654 - MIR SINE MIR -85 177 80 270 288 79 29 chr11 38000330 38000469 -110783003 - MIR SINE MIR 0 262 117 180 258 75 0 chr11 38001948 38002041 -110781431 + MER5A DNA MER1_type 9 108 -81 712 287 29 5 chr11 38003060 38003269 -110780203 - MIR SINE MIR -36 226 13 233 303 0 0 chr11 38004090 38004156 -110779316 - MIR SINE MIR -21 241 176 730 286 33 0 chr11 38004158 38004368 -110779104 + MIR SINE MIR 12 228 -34 1272 92 10 46 chr11 38004715 38004911 -110778561 + MER30B DNA MER1_type 2 190 0 434 228 106 63 chr11 38005154 38005343 -110778129 - MER6B DNA MER2_type -13 197 1 28 48 0 0 chr11 38005374 38005416 -110778056 + AT_rich Low_complexity Low_complexity 1 42 0 769 283 31 0 chr11 38006026 38006249 -110777223 - MIR SINE MIR -17 245 16 1625 193 51 28 chr11 38006389 38006778 -110776694 + L1MD3 LINE L1 7589 7986 -9 654 264 6 16 chr11 38007313 38007495 -110775977 - MIR SINE MIR -25 237 58 317 310 47 16 chr11 38007720 38007849 -110775623 - MIR SINE MIR -109 153 21 2236 104 3 3 chr11 38009184 38009482 -110773990 + AluSp SINE Alu 1 298 -15 25 31 0 0 chr11 38010885 38010917 -110772555 + AT_rich Low_complexity Low_complexity 1 32 0 182 36 0 36 chr11 38011202 38011230 -110772242 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 646 274 119 36 chr11 38011436 38011798 -110771674 + MLT1K LTR MaLR 154 545 -43 463 289 84 5 chr11 38012237 38012427 -110771045 - MIR SINE MIR -57 205 1 2373 91 0 0 chr11 38012751 38013047 -110770425 + AluSx SINE Alu 1 296 -16 330 256 108 45 chr11 38013219 38013442 -110770030 + L1ME4a LINE L1 5651 5887 -234 962 253 17 17 chr11 38013709 38013950 -110769522 + MIR SINE MIR 22 262 0 271 330 43 0 chr11 38013956 38014050 -110769422 + L2 LINE L2 3158 3255 -17 21 0 0 0 chr11 38014521 38014542 -110768930 + AT_rich Low_complexity Low_complexity 1 21 0 525 173 55 9 chr11 38015562 38015672 -110767800 - MIR SINE MIR -72 190 76 2405 53 3 0 chr11 38016123 38016439 -110767033 + AluY SINE Alu 1 317 0 370 287 72 24 chr11 38016920 38017087 -110766385 - MIR SINE MIR -3 259 85 865 150 24 0 chr11 38017175 38017302 -110766170 - FLAM_C SINE Alu -11 132 3 454 288 75 13 chr11 38018173 38018365 -110765107 - MIR SINE MIR -56 206 6 180 0 0 0 chr11 38018631 38018651 -110764821 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1965 134 4 4 chr11 38018653 38018928 -110764544 - AluJb SINE Alu -33 279 5 1357 193 45 0 chr11 38019037 38019326 -110764146 + L1PB4 LINE L1 5840 6145 -21 2141 134 3 6 chr11 38019670 38020007 -110763465 - AluSq SINE Alu 0 336 1 819 153 8 0 chr11 38020025 38020149 -110763323 - FLAM_C SINE Alu -18 125 1 191 196 43 0 chr11 38020165 38020211 -110763261 + MIR SINE MIR 98 145 -63 437 253 37 100 chr11 38020435 38020704 -110762768 + MER112 DNA MER1_type 2 253 -3 1053 192 21 56 chr11 38020721 38020897 -110762575 + MER33 DNA MER1_type 40 204 -2381 2237 118 0 0 chr11 38020897 38021201 -110762271 - AluSq SINE Alu -7 306 3 1053 192 21 56 chr11 38021201 38021311 -110762161 + MER33 DNA MER1_type 204 316 -8 1188 232 0 0 chr11 38021329 38021549 -110761923 + MER58A DNA MER1_type 4 223 -1 376 254 113 35 chr11 38021582 38021724 -110761748 - MIR SINE MIR -87 175 23 313 28 0 0 chr11 38022195 38022231 -110761241 - tRNA-Arg-AGA tRNA tRNA -40 36 1 205 256 33 100 chr11 38023074 38023164 -110760308 - MIR SINE MIR -87 175 92 184 277 157 0 chr11 38023328 38023411 -110760061 + L2 LINE L2 3177 3272 0 277 83 0 0 chr11 38025717 38025753 -110757719 + MLT1A1 LTR MaLR 1 36 -338 8110 10 0 3 chr11 38025757 38026856 -110756616 - L1PA2 LINE L1 0 6155 5058 7152 19 0 0 chr11 38026856 38027680 -110755792 + L1PA2 LINE L1 4236 5059 -1087 1943 162 27 3 chr11 38027680 38028014 -110755458 + MLT1A1 LTR MaLR 24 365 0 2979 127 0 2 chr11 38028327 38028767 -110754705 + L1PA15 LINE L1 5727 6165 0 754 256 108 20 chr11 38030185 38030490 -110752982 + L1ME4a LINE L1 5571 5902 -219 4866 137 65 38 chr11 38030843 38031719 -110751753 - MER4D LTR ERV1 -3 900 1 213 39 0 0 chr11 38032093 38032119 -110751353 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 3351 182 75 23 chr11 38032165 38032867 -110750605 + MER21B LTR ERV1 1 739 -124 688 286 31 8 chr11 38033176 38033431 -110750041 - MIR SINE MIR 0 262 2 445 164 45 82 chr11 38033586 38033696 -110749776 - MER45A DNA AcHobo -1 177 72 231 273 0 0 chr11 38036253 38036308 -110747164 + L2 LINE L2 3012 3066 -206 204 308 50 81 chr11 38036410 38036670 -110746802 - L2 LINE L2 -138 3175 2924 559 289 44 57 chr11 38036700 38036998 -110746474 - L2 LINE L2 -816 2498 2205 337 276 0 20 chr11 38037239 38037337 -110746135 + 7SK RNA RNA 1 96 -97 2630 68 3 0 chr11 38038378 38038701 -110744771 + THE1A LTR MaLR 1 324 -31 2113 137 0 0 chr11 38039710 38040025 -110743447 + AluSx SINE Alu 1 315 0 1465 168 4 4 chr11 38040236 38040504 -110742968 - L1MA8 LINE L1 -13 6278 6011 1035 259 90 35 chr11 38040633 38041034 -110742438 + LTR16A LTR ERVL 21 443 -7 946 183 0 24 chr11 38041534 38041703 -110741769 - FAM SINE Alu -10 165 1 244 261 120 0 chr11 38042278 38042370 -110741102 + MIR SINE MIR 106 208 -54 340 317 41 8 chr11 38043217 38043340 -110740132 - MER102a DNA MER1_type -26 304 178 886 296 21 4 chr11 38043347 38043590 -110739882 + MIR SINE MIR 4 250 -12 349 299 91 26 chr11 38043616 38043770 -110739702 - MER102a DNA MER1_type -154 176 13 466 303 113 23 chr11 38050038 38050259 -110733213 + MIR SINE MIR 12 252 -10 24 0 0 0 chr11 38050359 38050383 -110733089 + AT_rich Low_complexity Low_complexity 1 24 0 189 311 75 0 chr11 38051427 38051441 -110732031 + L3 LINE CR1 1111 1123 -454 476 224 21 94 chr11 38051441 38051633 -110731839 - MER5B DNA MER1_type 0 178 1 189 311 75 0 chr11 38051633 38051724 -110731748 + L3 LINE CR1 1123 1224 -353 396 269 121 50 chr11 38051917 38052099 -110731373 + MIR SINE MIR 19 213 -49 184 255 0 20 chr11 38052440 38052491 -110730981 - MER5A DNA MER1_type -4 185 136 486 293 66 6 chr11 38052684 38052851 -110730621 - MIR SINE MIR -10 252 76 250 244 0 100 chr11 38052854 38052944 -110730528 - LTR33 LTR ERVL 0 521 441 1869 154 31 0 chr11 38054469 38054762 -110728710 - AluJb SINE Alu 0 312 11 931 190 34 11 chr11 38054799 38054978 -110728494 - L1PA16 LINE L1 -9 6157 5975 6904 82 6 16 chr11 38055067 38056148 -110727324 - L1PA10 LINE L1 -1 6167 5095 598 308 94 20 chr11 38056175 38056647 -110726825 + L2 LINE L2 2595 3165 -107 438 75 0 170 chr11 38057463 38057557 -110725915 - MADE1 DNA Mariner 0 80 3 242 345 55 9 chr11 38057570 38057680 -110725792 + MIR SINE MIR 29 143 -119 514 296 74 37 chr11 38058086 38058275 -110725197 + MER91A DNA MER1_type 1 196 0 217 197 42 56 chr11 38058275 38058309 -110725163 + L2 LINE L2 3232 3264 -8 564 273 154 49 chr11 38058606 38058892 -110724580 - LTR33 LTR ERVL -182 339 24 219 286 16 16 chr11 38058903 38058966 -110724506 - MIR SINE MIR -196 66 4 360 331 69 23 chr11 38059745 38059875 -110723597 + MIR SINE MIR 15 150 -112 429 223 154 8 chr11 38060509 38060639 -110722833 + MIR SINE MIR 82 230 -32 656 128 0 0 chr11 38062669 38062755 -110720717 + AluS SINE Alu 2 87 -226 256 172 172 0 chr11 38062755 38062813 -110720659 - L1PB4 LINE L1 -119 6037 5970 274 213 0 0 chr11 38062813 38062860 -110720612 - Tigger5 DNA MER2_type -2261 62 16 226 73 49 0 chr11 38062865 38062906 -110720566 + (TA)n Simple_repeat Simple_repeat 2 44 0 2856 205 43 3 chr11 38062906 38063482 -110719990 - MER90 LTR ERV1 -1 613 15 1825 248 120 17 chr11 38063622 38064223 -110719249 + MLT2F LTR ERVL 1 663 0 323 294 49 28 chr11 38064745 38064888 -110718584 - MIR SINE MIR -32 230 85 2639 21 7 0 chr11 38064897 38065219 -110718253 + L1PA2 LINE L1 5853 6176 0 538 180 27 0 chr11 38065398 38065509 -110717963 + MLT1F LTR MaLR 429 542 0 443 262 166 38 chr11 38068015 38068305 -110715167 - MER102a DNA MER1_type -3 327 1 205 333 124 19 chr11 38068547 38068652 -110714820 + L2 LINE L2 3136 3251 -21 1104 111 0 0 chr11 38068668 38068848 -110714624 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 354 261 108 23 chr11 38068989 38069119 -110714353 - L2 LINE L2 -5 3308 3168 186 309 36 12 chr11 38069327 38069411 -110714061 - L2 LINE L2 -22 3250 3165 585 301 31 25 chr11 38069934 38070130 -110713342 + MIR SINE MIR 10 206 -56 960 115 0 8 chr11 38070330 38070460 -110713012 - AluSq/x SINE Alu -179 133 5 224 54 54 0 chr11 38071205 38071242 -110712230 + (TCTCTG)n Simple_repeat Simple_repeat 4 42 0 1841 158 0 17 chr11 38071249 38071540 -110711932 - AluSx SINE Alu -26 286 1 261 128 0 0 chr11 38071563 38071610 -110711862 + (TC)n Simple_repeat Simple_repeat 2 48 0 315 0 0 0 chr11 38071612 38071647 -110711825 + (CA)n Simple_repeat Simple_repeat 1 35 0 936 208 22 98 chr11 38073080 38073354 -110710118 + MIR SINE MIR 8 260 -2 371 278 14 42 chr11 38073360 38073504 -110709968 - MIR SINE MIR -72 190 51 1165 249 29 87 chr11 38073520 38074037 -110709435 - L2 LINE L2 0 3313 2827 1869 154 31 0 chr11 38077555 38077848 -110705624 - AluJb SINE Alu 0 312 11 931 190 34 11 chr11 38077885 38078064 -110705408 - L1PA16 LINE L1 -9 6157 5975 5720 86 21 8 chr11 38078153 38078953 -110704519 - L1PA10 LINE L1 -1 6482 5672 971 120 7 0 chr11 38078950 38079100 -110704372 + L1P LINE L1 4640 4790 -1356 * 25863 169 30 31 chr11 38079102 38082158 -110701314 - L1PA10 LINE L1 -790 5671 2551 2264 87 3 7 chr11 38082158 38082458 -110701014 - AluY SINE Alu -12 299 1 25863 169 30 31 chr11 38082458 38085007 -110698465 - L1PA10 LINE L1 -3910 2551 2 270 0 0 0 chr11 38085085 38085115 -110698357 + (A)n Simple_repeat Simple_repeat 1 30 0 520 266 88 16 chr11 38085584 38085776 -110697696 + Charlie8 DNA MER1_type 13 218 -2199 2143 141 32 9 chr11 38086624 38086972 -110696500 + MLT1A1 LTR MaLR 10 365 0 642 307 50 24 chr11 38086977 38087472 -110696000 + L1MEd LINE L1 732 1239 -4880 278 196 118 0 chr11 38087913 38087964 -110695508 + L2 LINE L2 3246 3302 -11 317 307 79 16 chr11 38087999 38088126 -110695346 + MIR SINE MIR 66 200 -62 630 233 44 44 chr11 38089359 38089565 -110693907 + LTR16A1 LTR ERVL 252 457 0 2421 185 68 32 chr11 38092017 38092519 -110690953 + MLT2B1 LTR ERVL 1 520 0 1046 299 28 30 chr11 38092570 38092965 -110690507 - LTR16C LTR ERVL 0 491 98 21 36 0 0 chr11 38093298 38093326 -110690146 + AT_rich Low_complexity Low_complexity 1 28 0 213 208 21 21 chr11 38094826 38094874 -110688598 + L2 LINE L2 3262 3309 -4 * 266 293 71 0 chr11 38094872 38094971 -110688501 + MIR SINE MIR 131 236 -26 6385 28 17 16 chr11 38095269 38096031 -110687441 - L1PA5 LINE L1 0 6154 5392 216 67 0 0 chr11 38096576 38096606 -110686866 + (CA)n Simple_repeat Simple_repeat 2 31 0 458 309 15 39 chr11 38097625 38097829 -110685643 - MIR SINE MIR -48 214 16 491 278 61 53 chr11 38098988 38099362 -110684110 + L1ME4a LINE L1 5547 5933 -188 1284 122 26 74 chr11 38099362 38099592 -110683880 - MER20 DNA MER1_type 0 219 1 2544 65 3 0 chr11 38101402 38101709 -110681763 + AluY SINE Alu 1 308 -3 764 320 36 13 chr11 38101900 38102305 -110681167 + LTR16A1 LTR ERVL 72 455 -2 315 226 36 12 chr11 38102439 38102523 -110680949 + MER94 DNA DNA 6 91 -43 410 224 116 48 chr11 38103578 38103725 -110679747 + MER103 DNA DNA 2 158 -8 395 291 70 6 chr11 38105026 38105184 -110678288 - MIR SINE MIR -16 246 79 461 252 16 16 chr11 38105239 38105362 -110678110 + MIR SINE MIR 28 150 -112 476 301 127 33 chr11 38106031 38106363 -110677109 + L2 LINE L2 2935 3297 -16 1129 300 50 18 chr11 38107306 38108148 -110675324 - L2 LINE L2 -1 3312 2435 249 291 25 0 chr11 38108907 38108986 -110674486 - L2 LINE L2 0 3313 3233 370 318 67 41 chr11 38109853 38110048 -110673424 - MIR SINE MIR -39 223 24 1061 238 5 5 chr11 38110629 38110843 -110672629 + MER58A DNA MER1_type 3 216 -8 2539 115 27 0 chr11 38111234 38111599 -110671873 + THE1C LTR MaLR 1 375 0 398 194 0 0 chr11 38111932 38112004 -110671468 + AluJ/FRAM SINE Alu 231 302 0 414 278 232 8 chr11 38112010 38112251 -110671221 + L2 LINE L2 3019 3313 0 283 296 40 8 chr11 38112266 38112391 -110671081 - MIR SINE MIR -62 200 72 497 287 44 17 chr11 38112419 38112600 -110670872 + MIR SINE MIR 4 189 -73 309 68 0 0 chr11 38113781 38113825 -110669647 + (TG)n Simple_repeat Simple_repeat 2 45 0 606 248 62 62 chr11 38114213 38114439 -110669033 + MIR SINE MIR 25 250 -12 659 276 107 0 chr11 38114681 38114906 -110668566 + MIR SINE MIR 13 261 -1 191 276 162 0 chr11 38114971 38115076 -110668396 + L2 LINE L2 3090 3211 -61 549 236 23 54 chr11 38115389 38115641 -110667831 - L1ME LINE L1 -5070 1302 947 * 6085 99 0 2 chr11 38115635 38116456 -110667016 - L1PA8 LINE L1 0 6172 5354 279 0 0 0 chr11 38116458 38116489 -110666983 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 504 127 0 0 chr11 38116489 38116560 -110666912 - AluSg/x SINE Alu -29 283 213 1020 229 9 9 chr11 38116953 38117163 -110666309 + MER63A DNA MER1_type 1 210 0 244 237 0 53 chr11 38117212 38117288 -110666184 - MIR SINE MIR 0 262 191 1218 137 23 6 chr11 38117335 38117361 -110666111 - MSTA LTR MaLR -8 424 400 2768 25 0 9 chr11 38117361 38117677 -110665795 + AluYb8 SINE Alu 1 313 -5 1218 137 23 6 chr11 38117677 38117863 -110665609 - MSTA LTR MaLR -32 400 206 2158 117 38 46 chr11 38117888 38118255 -110665217 + THE1B LTR MaLR 1 364 0 2414 101 0 0 chr11 38118385 38118692 -110664780 - AluSx SINE Alu -5 307 1 764 212 241 17 chr11 38118855 38119091 -110664381 - L1MD3 LINE L1 -155 7840 7552 265 238 48 48 chr11 38119997 38120102 -110663370 + MIR SINE MIR 48 152 -110 1602 164 0 27 chr11 38121382 38121645 -110661827 - AluSx SINE Alu -14 298 43 439 123 15 0 chr11 38122773 38122838 -110660634 - MSTA LTR MaLR -254 121 56 1580 175 24 69 chr11 38122957 38123381 -110660091 + MER34B LTR ERV1 5 397 -168 1136 229 10 38 chr11 38123936 38124224 -110659248 + MLT1A1 LTR MaLR 1 280 -85 186 43 0 0 chr11 38124248 38124271 -110659201 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 530 100 10 0 chr11 38124273 38124373 -110659099 + (TCTA)n Simple_repeat Simple_repeat 4 104 0 1424 156 14 81 chr11 38124373 38124668 -110658804 - AluSx SINE Alu -22 290 16 536 225 0 77 chr11 38124854 38125063 -110658409 + AluJb SINE Alu 106 298 -14 1379 191 48 61 chr11 38125272 38125660 -110657812 + MLT1D LTR MaLR 30 505 -105 995 229 72 20 chr11 38125948 38126240 -110657232 + MLT1A1 LTR MaLR 1 307 -58 4581 125 3 1 chr11 38126373 38127084 -110656388 - L1P LINE L1 -1134 5012 4301 219 191 0 0 chr11 38128268 38128310 -110655162 - MIR SINE MIR 0 262 221 589 274 81 5 chr11 38128312 38128509 -110654963 - MIR SINE MIR -5 257 46 474 252 80 61 chr11 38129208 38129471 -110654001 + L1MC4a LINE L1 6681 6842 -966 249 321 152 0 chr11 38130576 38130688 -110652784 + L2 LINE L2 3182 3310 -3 289 292 140 43 chr11 38131060 38131317 -110652155 + MLT1I LTR MaLR 14 295 -114 530 271 116 5 chr11 38131949 38132148 -110651324 + MIR SINE MIR 14 234 -28 1559 189 0 53 chr11 38132394 38132717 -110650755 - AluJo SINE Alu -6 306 1 307 85 85 17 chr11 38132870 38132929 -110650543 - Alu SINE Alu 0 302 240 991 96 15 0 chr11 38132932 38133068 -110650404 - AluJb SINE Alu -174 138 1 194 309 209 5 chr11 38133079 38133270 -110650202 + L2 LINE L2 1875 2104 -1210 2401 130 25 0 chr11 38134137 38134492 -110648980 - THE1B LTR MaLR 0 364 1 694 241 0 0 chr11 38134702 38134835 -110648637 + FLAM_A SINE Alu 1 133 0 722 282 46 8 chr11 38134922 38135163 -110648309 - MIR SINE MIR -12 250 1 246 231 77 22 chr11 38136672 38136763 -110646709 - L1ME4a LINE L1 -13 6108 6013 380 178 11 22 chr11 38137113 38137203 -110646269 + MIR SINE MIR 56 144 -118 287 31 0 0 chr11 38137203 38137235 -110646237 + MSTA LTR MaLR 1 32 -396 258 116 0 0 chr11 38137610 38137653 -110645819 + (TCTCCC)n Simple_repeat Simple_repeat 4 46 0 441 288 78 55 chr11 38137674 38138074 -110645398 + L2 LINE L2 2864 3272 0 2392 53 0 0 chr11 38138524 38138829 -110644643 - AluY SINE Alu 0 305 1 373 253 44 32 chr11 38138943 38139101 -110644371 + Charlie7 DNA MER1_type 6 165 -2447 3948 159 55 62 chr11 38140361 38141080 -110642392 + L1MB4 LINE L1 5040 5753 -427 1882 146 3 7 chr11 38141080 38141367 -110642105 + AluSx SINE Alu 1 286 -26 3948 159 55 62 chr11 38141367 38141763 -110641709 + L1MB4 LINE L1 5753 6150 -30 327 306 110 32 chr11 38142473 38142692 -110640780 + MIR SINE MIR 8 243 -19 479 298 65 34 chr11 38142993 38143285 -110640187 + L2 LINE L2 3009 3309 -4 2116 218 21 7 chr11 38144017 38144440 -110639032 + MLT1D LTR MaLR 77 505 0 384 317 12 25 chr11 38144549 38144710 -110638762 - L2 LINE L2 0 3313 3155 4106 107 87 27 chr11 38144843 38145320 -110638152 - Tigger3(Golem) DNA MER2_type 0 3028 2494 2143 146 0 7 chr11 38145320 38145629 -110637843 - AluJb SINE Alu -5 307 1 4106 107 87 27 chr11 38145629 38145850 -110637622 - Tigger3(Golem) DNA MER2_type -534 2494 2288 15705 178 27 25 chr11 38145852 38146431 -110637041 - L1MA4 LINE L1 -366 6116 5539 198 0 0 0 chr11 38146441 38146463 -110637009 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 2989 88 7 7 chr11 38146463 38146863 -110636609 - L1PA10 LINE L1 -17 6151 5749 15705 178 27 25 chr11 38146863 38151236 -110632236 - L1MA4 LINE L1 -943 5539 1166 2345 94 10 3 chr11 38151236 38151543 -110631929 - AluSp SINE Alu -4 309 1 15705 178 27 25 chr11 38151543 38152711 -110630761 - L1MA4 LINE L1 -5316 1166 1 2910 119 8 30 chr11 38152724 38153193 -110630279 - L1PA15 LINE L1 0 6165 5707 429 218 0 0 chr11 38153194 38153272 -110630200 - Tigger3(Golem) DNA MER2_type -2950 79 2 33 0 0 0 chr11 38153794 38153827 -110629645 + AT_rich Low_complexity Low_complexity 1 33 0 2087 130 14 23 chr11 38154326 38154680 -110628792 - L1MC1 LINE L1 -9 6324 5974 291 252 102 65 chr11 38154709 38155003 -110628469 - L1ME4a LINE L1 -29 6092 5788 443 272 121 0 chr11 38156485 38156658 -110626814 - MIR SINE MIR -49 213 20 547 261 95 27 chr11 38156718 38156911 -110626561 + MIR SINE MIR 4 217 -45 1855 177 7 0 chr11 38156911 38157210 -110626262 + AluJo SINE Alu 5 305 -7 547 261 95 27 chr11 38157210 38157242 -110626230 + MIR SINE MIR 217 245 -17 870 254 58 4 chr11 38157403 38157643 -110625829 - MIR SINE MIR -2 260 8 571 259 118 48 chr11 38157686 38157914 -110625558 - MIR SINE MIR 0 262 19 292 270 11 23 chr11 38157926 38158028 -110625444 + MER5B DNA MER1_type 21 110 -68 201 333 9 18 chr11 38157939 38158053 -110625419 - MER5A DNA MER1_type -22 167 55 * 1671 170 3 60 chr11 38158901 38159219 -110624253 + AluJo SINE Alu 1 300 -12 428 271 28 39 chr11 38160256 38160437 -110623035 - MIR SINE MIR -34 228 50 333 247 0 22 chr11 38161736 38161825 -110621647 + MER103 DNA DNA 2 88 -78 315 352 40 0 chr11 38161947 38162072 -110621400 + L2 LINE L2 3184 3313 0 515 281 92 23 chr11 38164072 38164289 -110619183 + MIR SINE MIR 18 249 -13 351 291 68 73 chr11 38165976 38166049 -110617423 + MIR SINE MIR 20 92 -170 3239 145 35 25 chr11 38166049 38166102 -110617370 - L1MB3 LINE L1 -1 6182 6131 249 57 0 0 chr11 38166102 38166137 -110617335 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2359 72 0 0 chr11 38166137 38166415 -110617057 - AluY SINE Alu -30 281 4 3239 145 35 25 chr11 38166415 38166960 -110616512 - L1MB3 LINE L1 -51 6132 5577 351 291 68 73 chr11 38166960 38167120 -110616352 + MIR SINE MIR 92 252 -10 228 303 0 22 chr11 38167130 38167219 -110616253 + MIR3 SINE MIR 121 207 -1 224 98 0 24 chr11 38169271 38169312 -110614160 + (TTTC)n Simple_repeat Simple_repeat 3 42 0 703 246 113 5 chr11 38170703 38170906 -110612566 - MIR SINE MIR -33 229 5 918 117 11 15 chr11 38170950 38171100 -110612372 + THE1C LTR MaLR 1 121 -254 798 265 55 8 chr11 38171361 38171599 -110611873 + MIR SINE MIR 13 261 -1 439 123 15 0 chr11 38172113 38172178 -110611294 - THE1C LTR MaLR -254 121 56 2049 169 50 92 chr11 38172308 38172894 -110610578 + MER34B LTR ERV1 5 565 0 497 271 136 5 chr11 38173664 38173878 -110609594 + MIR SINE MIR 18 259 -3 316 213 82 41 chr11 38174973 38175095 -110608377 + MIR SINE MIR 75 201 -61 1130 186 151 14 chr11 38175351 38175636 -110607836 + MLT1F LTR MaLR 180 501 -41 1647 190 30 51 chr11 38175636 38175858 -110607614 - MLT1A1 LTR MaLR 0 365 153 1905 184 46 3 chr11 38175858 38176206 -110607266 + MLT1A1 LTR MaLR 3 365 0 1647 190 30 51 chr11 38176206 38176356 -110607116 - MLT1A1 LTR MaLR -212 153 1 577 260 26 0 chr11 38176546 38176700 -110606772 - MLT1L LTR MaLR -5 610 453 25 0 0 0 chr11 38177031 38177056 -110606416 + AT_rich Low_complexity Low_complexity 1 25 0 872 284 125 37 chr11 38177132 38177540 -110605932 - L2 LINE L2 -4 3309 2866 2874 320 53 38 chr11 38177860 38179766 -110603706 + HERVL LTR ERVL 2253 4201 -1284 234 284 0 15 chr11 38179815 38179882 -110603590 - MER5A DNA MER1_type -83 106 41 320 282 29 23 chr11 38181079 38181253 -110602219 + CT-rich Low_complexity Low_complexity 1 175 0 2258 125 0 0 chr11 38181758 38182070 -110601402 - AluSx SINE Alu 0 312 1 346 239 64 18 chr11 38182247 38182356 -110601116 + MIR3 SINE MIR 61 174 -34 427 284 77 64 chr11 38183599 38183926 -110599546 - L2 LINE L2 -106 3166 2836 723 300 65 14 chr11 38183979 38184256 -110599216 + MLT1F1 LTR MaLR 2 292 -250 2156 190 35 76 chr11 38184271 38184851 -110598621 - MER34B LTR ERV1 -5 560 5 1113 154 65 19 chr11 38184855 38185069 -110598403 + MLT1F1 LTR MaLR 343 566 -1 376 184 0 69 chr11 38185090 38185177 -110598295 + MIR3 SINE MIR 76 156 -52 432 221 107 27 chr11 38185309 38185458 -110598014 - MIR SINE MIR 0 262 102 266 292 29 36 chr11 38186485 38186622 -110596850 + MIR SINE MIR 96 231 -31 593 264 99 33 chr11 38186677 38186889 -110596583 + MIR SINE MIR 37 262 0 28 0 0 0 chr11 38187373 38187401 -110596071 + AT_rich Low_complexity Low_complexity 1 28 0 4961 89 12 6 chr11 38187411 38188074 -110595398 - PABL_B LTR ERV1 0 667 1 593 185 37 0 chr11 38188096 38188204 -110595268 - MER44D DNA MER2_type 0 605 494 195 204 0 0 chr11 38188205 38188249 -110595223 + (CATA)n Simple_repeat Simple_repeat 2 45 0 1121 94 133 109 chr11 38188249 38188484 -110594988 - MER44D DNA MER2_type -1957 534 306 2249 106 38 46 chr11 38188484 38188851 -110594621 + THE1B LTR MaLR 1 364 0 1121 94 133 109 chr11 38188851 38188871 -110594601 - MER44D DNA MER2_type -2185 306 3 2325 105 0 3 chr11 38188981 38189287 -110594185 - AluSg SINE Alu -5 305 1 25 0 0 0 chr11 38190230 38190255 -110593217 + AT_rich Low_complexity Low_complexity 1 25 0 621 240 29 6 chr11 38191207 38191378 -110592094 + MER5B DNA MER1_type 4 178 0 258 32 0 0 chr11 38191930 38191961 -110591511 + (TTG)n Simple_repeat Simple_repeat 2 32 0 6520 88 6 16 chr11 38192058 38193130 -110590342 - L1PA10 LINE L1 -5 6163 5095 520 281 65 19 chr11 38193157 38193541 -110589931 + L2 LINE L2 2595 3059 -213 412 75 0 170 chr11 38194445 38194539 -110588933 - MADE1 DNA Mariner 0 80 3 210 345 55 9 chr11 38194552 38194662 -110588810 + MIR SINE MIR 29 143 -119 457 299 72 12 chr11 38195068 38195235 -110588237 + MER91A DNA MER1_type 1 177 -19 194 167 62 0 chr11 38195243 38195291 -110588181 + L2 LINE L2 3214 3264 -8 454 301 27 7 chr11 38195378 38195524 -110587948 + MIR SINE MIR 2 150 -112 403 209 29 19 chr11 38195705 38195810 -110587662 - MIR SINE MIR -12 250 145 2806 123 16 23 chr11 38197250 38197638 -110585834 + MSTA LTR MaLR 2 388 -40 2899 16 0 0 chr11 38197638 38197951 -110585521 - AluYb8 SINE Alu -5 313 1 2806 123 16 23 chr11 38197951 38197992 -110585480 + MSTA LTR MaLR 388 428 0 243 0 0 0 chr11 38198590 38198617 -110584855 + (TC)n Simple_repeat Simple_repeat 1 27 0 719 253 176 41 chr11 38199267 38199631 -110583841 + MLT1J2 LTR MaLR 34 450 0 988 258 83 67 chr11 38199792 38200312 -110583160 + L1MC4a LINE L1 5297 5555 -745 2382 94 0 0 chr11 38200841 38201148 -110582324 + AluSg SINE Alu 1 307 -3 978 293 68 4 chr11 38201305 38201916 -110581556 - MER115 DNA AcHobo -5 688 1 383 274 0 11 chr11 38203766 38203861 -110579611 - L2 LINE L2 -4 3309 3216 1262 109 0 0 chr11 38203864 38204029 -110579443 + AluSq SINE Alu 9 173 -140 1678 265 150 43 chr11 38204029 38204972 -110578500 - L2 LINE L2 -105 3208 2163 523 203 31 47 chr11 38204973 38205101 -110578371 + MER106B DNA MER1_type 934 1059 0 203 315 144 0 chr11 38205102 38205213 -110578259 - L2 LINE L2 -1477 1837 1711 765 288 9 35 chr11 38205254 38205480 -110577992 - MIR SINE MIR -15 247 28 232 214 18 0 chr11 38205537 38205593 -110577879 + (TA)n Simple_repeat Simple_repeat 1 57 0 333 0 0 0 chr11 38205595 38205632 -110577840 + (CA)n Simple_repeat Simple_repeat 2 38 0 383 306 57 26 chr11 38207489 38207682 -110575790 + MIR SINE MIR 8 206 -56 30 59 0 0 chr11 38208115 38208166 -110575306 + AT_rich Low_complexity Low_complexity 1 51 0 2179 126 0 3 chr11 38209164 38209473 -110573999 + AluJb SINE Alu 1 308 -4 404 238 0 0 chr11 38209886 38209966 -110573506 + L1M1 LINE L1 418 497 -7068 416 277 15 22 chr11 38210021 38210158 -110573314 + L2 LINE L2 3176 3311 -2 374 335 49 57 chr11 38210185 38210430 -110573042 + L2 LINE L2 3028 3270 -2 1493 165 29 25 chr11 38210893 38211172 -110572300 + MER7A DNA MER2_type 1 278 -68 350 349 33 7 chr11 38211271 38211423 -110572049 - MER5A DNA MER1_type 0 189 34 232 194 45 60 chr11 38211423 38211490 -110571982 - MER34 LTR ERV1 -4 538 473 10000 157 206 21 chr11 38211493 38213594 -110569878 + L1MA3 LINE L1 16 2759 -4806 1350 124 29 37 chr11 38213588 38213830 -110569642 + L1MA3 LINE L1 5623 5862 -443 * 1428 122 9 31 chr11 38213831 38214053 -110569419 - THE1B LTR MaLR -1 363 147 1533 145 28 4 chr11 38214053 38214301 -110569171 + L1MA3 LINE L1 2753 3006 -4559 * 6068 139 14 17 chr11 38214297 38214998 -110568474 + L1MA3 LINE L1 6584 7282 -442 2410 129 19 25 chr11 38214998 38215363 -110568109 - THE1B LTR MaLR -1 363 1 6068 139 14 17 chr11 38215363 38215772 -110567700 + L1MA3 LINE L1 7282 7691 -33 698 179 0 0 chr11 38216242 38216365 -110567107 - MER97a DNA MER1_type? -721 173 51 468 221 33 41 chr11 38216429 38216551 -110566921 + L2 LINE L2 3151 3271 -1 657 224 86 0 chr11 38216814 38216988 -110566484 + MER33 DNA MER1_type 30 218 -106 2073 180 9 35 chr11 38217338 38217771 -110565701 - L1MC3 LINE L1 -1 7784 7363 499 103 10 72 chr11 38217772 38217869 -110565603 + MLT1A1 LTR MaLR 2 92 -273 3937 125 35 22 chr11 38217876 38218500 -110564972 - MER39B LTR ERV1 -21 632 1 1316 201 19 22 chr11 38218500 38218767 -110564705 + MLT1A1 LTR MaLR 92 357 -8 1335 164 33 21 chr11 38218982 38219256 -110564216 - L1MC3 LINE L1 -415 7580 7129 210 349 47 12 chr11 38219439 38219525 -110563947 + MIR3 SINE MIR 10 98 -110 358 230 44 62 chr11 38219555 38219668 -110563804 + MIR SINE MIR 33 143 -65 1518 154 47 50 chr11 38220191 38220489 -110562983 - MLT1B LTR MaLR -91 299 3 4420 154 34 73 chr11 38220495 38220561 -110562911 + Charlie1 DNA MER1_type 1812 1879 -882 2136 131 0 3 chr11 38220561 38220852 -110562620 + AluSx SINE Alu 1 290 -22 4420 154 34 73 chr11 38220852 38221298 -110562174 + Charlie1 DNA MER1_type 1879 2341 -420 1670 174 7 14 chr11 38221298 38221579 -110561893 + AluJb SINE Alu 7 285 -27 4420 154 34 73 chr11 38221579 38222018 -110561454 + Charlie1 DNA MER1_type 2341 2727 -34 1617 186 10 7 chr11 38222018 38222324 -110561148 + AluJb SINE Alu 1 307 -5 4420 154 34 73 chr11 38222324 38222358 -110561114 + Charlie1 DNA MER1_type 2727 2761 0 272 305 47 47 chr11 38222358 38222486 -110560986 - L2 LINE L2 -4 3309 3182 8185 22 1 0 chr11 38222491 38223614 -110559858 + L1PA3 LINE L1 5047 6170 0 1324 261 70 60 chr11 38224492 38224654 -110558818 + MLT1E LTR MaLR 1 160 -433 1701 213 63 17 chr11 38224654 38225001 -110558471 + MLT1A1 LTR MaLR 3 365 0 1324 261 70 60 chr11 38225001 38225425 -110558047 + MLT1E LTR MaLR 160 593 0 469 329 60 3 chr11 38226092 38226515 -110556957 - LTR16B LTR ERVL -2 462 1 2048 107 25 4 chr11 38226769 38227049 -110556423 - AluSg SINE Alu -24 286 1 335 306 35 0 chr11 38227755 38227840 -110555632 + MIR SINE MIR 30 117 -91 739 275 130 43 chr11 38227913 38228375 -110555097 - MLT1J LTR MaLR -2 509 8 451 170 10 60 chr11 38230350 38230450 -110553022 + MER5B DNA MER1_type 1 95 -83 2502 148 89 9 chr11 38231631 38232069 -110551403 - L1MC1 LINE L1 -16 6317 5845 1926 168 0 3 chr11 38232219 38232528 -110550944 + AluJb SINE Alu 1 308 -4 1811 151 56 122 chr11 38232633 38233076 -110550396 + MLT2D LTR ERVL 1 414 0 182 235 0 0 chr11 38233256 38233290 -110550182 + MIR SINE MIR 89 122 -86 468 0 0 0 chr11 38235380 38235432 -110548040 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 451 271 154 19 chr11 38235546 38235760 -110547712 - MIR SINE MIR -18 244 2 185 108 27 0 chr11 38235929 38235966 -110547506 + (AACTG)n Simple_repeat Simple_repeat 4 41 0 2239 110 0 22 chr11 38236824 38237141 -110546331 + AluSg SINE Alu 1 310 0 624 85 25 0 chr11 38237141 38237259 -110546213 + (TA)n Simple_repeat Simple_repeat 2 122 0 539 258 60 87 chr11 38237324 38237658 -110545814 + MLT1H LTR MaLR 140 464 -85 2030 178 61 57 chr11 38237860 38238333 -110545139 - MLT1D LTR MaLR -1 504 30 1846 162 7 7 chr11 38238542 38238838 -110544634 - AluJb SINE Alu -14 298 3 7275 195 7 8 chr11 38239446 38240900 -110542572 - L1P5 LINE L1 -1244 4902 3451 3865 117 32 17 chr11 38240899 38241510 -110541962 + L1P5 LINE L1 4912 5512 -639 * 1463 134 0 0 chr11 38241510 38241719 -110541753 - AluSq SINE Alu -5 308 100 3865 117 32 17 chr11 38241719 38241971 -110541501 + L1P5 LINE L1 5512 5796 -355 294 73 0 0 chr11 38241971 38242012 -110541460 + (TG)n Simple_repeat Simple_repeat 2 42 0 3865 117 32 17 chr11 38242012 38242035 -110541437 + L1P5 LINE L1 5796 5817 -334 914 271 78 37 chr11 38242368 38242852 -110540620 + L2 LINE L2 2804 3307 -6 574 162 86 19 chr11 38242887 38242992 -110540480 + MER81 DNA DNA 3 114 0 252 246 0 0 chr11 38243090 38243147 -110540325 + L2 LINE L2 3257 3313 0 502 251 159 43 chr11 38243758 38243839 -110539633 + MIR3 SINE MIR 5 75 -187 1438 190 100 31 chr11 38243839 38244160 -110539312 - MER2 DNA MER2_type 0 344 2 502 251 159 43 chr11 38244160 38244267 -110539205 + MIR3 SINE MIR 75 212 -50 1957 150 0 3 chr11 38245067 38245361 -110538111 + AluJb SINE Alu 1 293 -19 424 231 94 147 chr11 38245598 38245918 -110537554 - MLT1J LTR MaLR -4 507 205 364 300 127 17 chr11 38246041 38246278 -110537194 - MLT1L LTR MaLR -113 502 240 225 211 29 115 chr11 38246316 38246420 -110537052 - MLT1L LTR MaLR -482 133 39 183 278 153 56 chr11 38246423 38246567 -110536905 + MIR SINE MIR 35 192 -70 309 325 109 18 chr11 38247488 38247771 -110535701 + MLT1K LTR MaLR 168 476 -112 2341 63 0 13 chr11 38248047 38248348 -110535124 + AluY SINE Alu 1 297 -14 442 256 70 17 chr11 38249621 38249793 -110533679 + MIR SINE MIR 2 182 -80 192 200 0 0 chr11 38250293 38250333 -110533139 + (CA)n Simple_repeat Simple_repeat 1 40 0 2059 112 7 3 chr11 38251106 38251393 -110532079 + AluJo SINE Alu 3 290 -22 374 289 21 70 chr11 38251660 38251802 -110531670 - MIR SINE MIR -10 252 118 1592 164 0 23 chr11 38252267 38252529 -110530943 + AluSx SINE Alu 43 298 -14 213 290 22 91 chr11 38252741 38252912 -110530560 + MIR SINE MIR 34 192 -70 219 270 95 32 chr11 38253664 38253790 -110529682 + MIR SINE MIR 119 252 -10 243 189 0 0 chr11 38254332 38254385 -110529087 + (CAT)n Simple_repeat Simple_repeat 1 53 0 225 301 0 60 chr11 38255491 38255574 -110527898 - MIR3 SINE MIR -50 158 81 230 311 66 33 chr11 38255583 38255734 -110527738 + L2 LINE L2 2939 3094 -178 475 264 176 0 chr11 38255785 38255967 -110527505 - MIR SINE MIR -46 216 3 719 252 145 12 chr11 38256057 38256285 -110527187 - MLT1L LTR MaLR 0 615 266 502 257 45 17 chr11 38256299 38256478 -110526994 - MLT1L LTR MaLR -297 318 135 1540 201 5 69 chr11 38257235 38257296 -110526176 - MLT1A1 LTR MaLR -11 354 291 1732 139 0 74 chr11 38257296 38257606 -110525866 + AluSx SINE Alu 4 290 -22 542 28 14 0 chr11 38257606 38257678 -110525794 + (TAGA)n Simple_repeat Simple_repeat 4 76 0 1540 201 5 69 chr11 38257678 38257703 -110525769 - MLT1A1 LTR MaLR -73 292 267 201 39 0 0 chr11 38257703 38257729 -110525743 + (GA)n Simple_repeat Simple_repeat 2 27 0 1540 201 5 69 chr11 38257729 38258018 -110525454 - MLT1A1 LTR MaLR -98 267 1 191 269 13 13 chr11 38258592 38258670 -110524802 - MIR SINE MIR -38 224 147 618 254 21 0 chr11 38258722 38258864 -110524608 - MIR SINE MIR -105 157 13 386 299 130 0 chr11 38259004 38259181 -110524291 + MIR SINE MIR 53 252 -10 278 299 20 27 chr11 38259205 38259352 -110524120 - MIR SINE MIR -64 198 53 285 248 129 10 chr11 38260259 38260360 -110523112 - L2 LINE L2 -4 3309 3197 205 282 64 0 chr11 38260662 38260740 -110522732 - L2 LINE L2 -19 3294 3212 357 314 0 0 chr11 38261645 38261750 -110521722 + MIR SINE MIR 39 143 -65 219 134 0 60 chr11 38262491 38262558 -110520914 + (AGGGGG)n Simple_repeat Simple_repeat 5 67 0 31 26 0 0 chr11 38262973 38263011 -110520461 + GC_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr11 38263089 38263118 -110520354 + GC_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr11 38264940 38264969 -110518503 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 38265050 38265071 -110518401 + AT_rich Low_complexity Low_complexity 1 21 0 233 209 330 0 chr11 38266896 38266987 -110516485 + MIR SINE MIR 88 208 -54 183 42 0 0 chr11 38267050 38267074 -110516398 + (A)n Simple_repeat Simple_repeat 1 24 0 24 0 0 0 chr11 38267332 38267356 -110516116 + AT_rich Low_complexity Low_complexity 1 24 0 301 190 38 25 chr11 38267645 38267724 -110515748 + MIR SINE MIR 161 240 -22 277 282 154 0 chr11 38268346 38268456 -110515016 + MIR3 SINE MIR 32 158 -50 608 274 28 32 chr11 38268464 38268712 -110514760 + MER112 DNA MER1_type 8 254 -6 201 191 0 0 chr11 38268712 38268754 -110514718 + MIR3 SINE MIR 153 194 -14 23 0 0 0 chr11 38269338 38269361 -110514111 + AT_rich Low_complexity Low_complexity 1 23 0 1309 177 28 54 chr11 38269729 38269761 -110513711 - L1MB4 LINE L1 0 6180 6149 2333 99 0 3 chr11 38269761 38270064 -110513408 - AluSx SINE Alu -10 302 1 1309 177 28 54 chr11 38270064 38270348 -110513124 - L1MB4 LINE L1 -31 6149 5872 282 280 13 0 chr11 38270656 38270731 -110512741 - L2 LINE L2 -43 3229 3154 233 292 58 50 chr11 38271280 38271400 -110512072 - MIR SINE MIR -122 140 20 2285 85 3 3 chr11 38271444 38271738 -110511734 - AluY SINE Alu -17 294 1 22 35 0 0 chr11 38271748 38271777 -110511695 + AT_rich Low_complexity Low_complexity 1 29 0 767 189 0 0 chr11 38271833 38271960 -110511512 - FLAM_C SINE Alu -10 133 7 550 269 70 76 chr11 38272012 38272354 -110511118 - L1MEd LINE L1 -4885 1234 895 575 194 26 65 chr11 38272533 38272688 -110510784 - MER53 DNA DNA -13 176 28 1512 242 176 35 chr11 38272747 38273371 -110510101 - L1MEd LINE L1 -5406 713 2 353 354 93 59 chr11 38274779 38275220 -110508252 - L2 LINE L2 -2 3270 2815 789 228 99 26 chr11 38275291 38275524 -110507948 + MIR SINE MIR 10 259 -3 2210 137 103 0 chr11 38275613 38276001 -110507471 + MSTA LTR MaLR 1 428 0 332 185 46 15 chr11 38276128 38276193 -110507279 + AluS SINE Alu 1 67 -236 1588 177 45 24 chr11 38277119 38277407 -110506065 - AluJb SINE Alu -18 294 1 2235 111 3 3 chr11 38277437 38277734 -110505738 + AluSg SINE Alu 1 297 -13 289 232 0 14 chr11 38277879 38277948 -110505524 + LTR67 LTR ERVL 486 553 -4 1007 233 9 9 chr11 38278195 38278405 -110505067 + MER63A DNA MER1_type 1 210 0 427 284 41 78 chr11 38278454 38278603 -110504869 - MIR SINE MIR 0 262 126 2574 71 0 0 chr11 38278603 38278913 -110504559 + AluY SINE Alu 1 310 -1 427 284 41 78 chr11 38278913 38279034 -110504438 - MIR SINE MIR -136 126 2 2234 108 0 7 chr11 38279260 38279557 -110503915 - AluSg SINE Alu -10 300 6 382 285 182 6 chr11 38279568 38279733 -110503739 - MIR SINE MIR 0 262 69 337 289 83 8 chr11 38279760 38279881 -110503591 - MIR SINE MIR -116 146 17 3366 151 22 3 chr11 38280881 38281465 -110502007 + L1MB3 LINE L1 5589 6183 0 281 263 82 0 chr11 38281614 38281718 -110501754 - MIR SINE MIR -62 146 52 851 308 20 0 chr11 38282337 38282587 -110500885 + MIR SINE MIR 8 262 0 22 0 0 0 chr11 38283445 38283467 -110500005 + AT_rich Low_complexity Low_complexity 1 22 0 194 184 0 0 chr11 38283761 38283799 -110499673 - L2 LINE L2 0 3313 3276 2299 94 10 0 chr11 38284456 38284744 -110498728 + AluSg SINE Alu 1 291 -19 349 234 36 63 chr11 38284831 38284942 -110498530 + L1ME LINE L1 5627 5734 -436 1857 166 10 7 chr11 38285041 38285342 -110498130 - AluJo SINE Alu -9 303 2 264 250 0 14 chr11 38285364 38285436 -110498036 + LTR33A LTR ERVL 446 516 -7 207 0 0 0 chr11 38285629 38285652 -110497820 + (TC)n Simple_repeat Simple_repeat 1 23 0 299 336 25 0 chr11 38285902 38286024 -110497448 + L2 LINE L2 3183 3307 -6 604 263 64 6 chr11 38286118 38286289 -110497183 - MIR SINE MIR -3 259 79 752 279 106 0 chr11 38286731 38286957 -110496515 + MIR SINE MIR 2 251 -11 369 277 68 16 chr11 38287895 38288077 -110495395 + MIR SINE MIR 44 234 -28 2094 104 11 7 chr11 38288205 38288484 -110494988 - AluSx SINE Alu -31 281 2 712 202 13 3 chr11 38288513 38288747 -110494725 + AluJo SINE Alu 1 303 -9 366 216 196 0 chr11 38288856 38289004 -110494468 + MER104 DNA MER2_type 4 180 0 25 51 0 0 chr11 38289165 38289204 -110494268 + AT_rich Low_complexity Low_complexity 1 39 0 349 338 41 0 chr11 38289204 38289349 -110494123 + MIR SINE MIR 57 207 -55 1917 166 14 30 chr11 38289556 38289923 -110493549 - MLT1A1 LTR MaLR -4 361 1 1515 213 32 47 chr11 38290211 38290629 -110492843 - MLT1D LTR MaLR -105 400 1 700 259 15 34 chr11 38290647 38290910 -110492562 - MIR SINE MIR 0 262 5 564 284 54 124 chr11 38291050 38291589 -110491883 - MLT1K LTR MaLR -4 584 84 303 86 52 69 chr11 38291635 38291682 -110491790 - MLT1L LTR MaLR -75 540 495 1220 152 65 9 chr11 38291682 38291899 -110491573 - MSTB1 LTR MaLR 0 432 204 312 172 0 0 chr11 38291901 38291959 -110491513 + GA-rich Low_complexity Low_complexity 1 58 0 793 186 45 57 chr11 38291959 38292217 -110491255 - MSTB2 LTR MaLR -201 231 1 786 247 136 38 chr11 38292292 38292608 -110490864 - MLT1L LTR MaLR -223 392 46 647 289 117 18 chr11 38292877 38293150 -110490322 + MLT1H LTR MaLR 1 300 -249 638 273 45 23 chr11 38293354 38293574 -110489898 + MLT1H LTR MaLR 331 555 0 423 312 43 14 chr11 38293574 38293712 -110489760 - MIR3 SINE MIR -42 166 25 1822 157 16 35 chr11 38293734 38294052 -110489420 + AluJo SINE Alu 1 312 0 694 276 46 42 chr11 38294126 38294387 -110489085 - MIR SINE MIR 0 262 1 221 221 15 44 chr11 38294797 38294865 -110488607 + GA-rich Low_complexity Low_complexity 4 69 0 570 288 8 0 chr11 38294950 38295082 -110488390 - MER94 DNA DNA 0 134 2 242 202 64 85 chr11 38295133 38295227 -110488245 - L2 LINE L2 -42 3230 3139 210 305 29 9 chr11 38295281 38295386 -110488086 - L2 LINE L2 -270 3002 2896 23 0 0 0 chr11 38295517 38295540 -110487932 + AT_rich Low_complexity Low_complexity 1 23 0 222 37 0 0 chr11 38295802 38295829 -110487643 + (GA)n Simple_repeat Simple_repeat 2 28 0 2128 113 3 49 chr11 38296012 38296339 -110487133 - AluSx SINE Alu 0 312 1 47 19 0 0 chr11 38296607 38296661 -110486811 + AT_rich Low_complexity Low_complexity 1 54 0 267 306 98 29 chr11 38296855 38297028 -110486444 - L2 LINE L2 -456 2858 2674 2228 89 3 7 chr11 38297162 38297483 -110485989 - AluSc SINE Alu 0 320 1 387 293 131 20 chr11 38297930 38298282 -110485190 + L1ME LINE L1 4942 5332 -814 322 229 101 0 chr11 38298322 38298431 -110485041 + L1ME LINE L1 5395 5514 -650 27 29 0 0 chr11 38298660 38298694 -110484778 + AT_rich Low_complexity Low_complexity 1 34 0 259 310 0 0 chr11 38298789 38298860 -110484612 - tRNA-Thr-ACA tRNA tRNA -3 73 3 308 230 58 11 chr11 38300064 38300151 -110483321 + MIR SINE MIR 45 135 -73 807 114 98 15 chr11 38300421 38300553 -110482919 + MER39B LTR ERV1 1 143 -510 1267 82 6 6 chr11 38300553 38300724 -110482748 - AluSp SINE Alu -17 296 126 3004 148 20 26 chr11 38300724 38300984 -110482488 + MER39B LTR ERV1 151 408 -245 4015 101 20 0 chr11 38300984 38301527 -110481945 - MER41A LTR ERV1 0 554 1 3004 148 20 26 chr11 38301527 38301772 -110481700 + MER39B LTR ERV1 408 653 0 326 267 11 0 chr11 38301826 38301916 -110481556 + MLT-int LTR MaLR 32 122 -1613 2131 88 4 0 chr11 38301924 38302196 -110481276 + AluSp SINE Alu 2 274 -39 1072 269 26 3 chr11 38302214 38302523 -110480949 + MLT1F-int LTR MaLR 291 606 -765 315 293 83 38 chr11 38302739 38302896 -110480576 + MLT1F-int LTR MaLR 715 878 -493 2382 90 0 7 chr11 38303194 38303494 -110479978 - AluSx SINE Alu -14 298 1 504 264 54 20 chr11 38303607 38303755 -110479717 + MLT1F-int LTR MaLR 1219 1371 0 2270 218 81 8 chr11 38303755 38304260 -110479212 + MLT1F LTR MaLR 1 542 0 2074 140 0 0 chr11 38304416 38304709 -110478763 + AluSx SINE Alu 1 293 -19 1944 131 19 22 chr11 38304917 38305230 -110478242 + AluJb SINE Alu 1 312 0 424 272 33 72 chr11 38306030 38306210 -110477262 - MIR SINE MIR -72 190 18 25 0 0 0 chr11 38306953 38306978 -110476494 + GC_rich Low_complexity Low_complexity 1 25 0 29 60 0 0 chr11 38307011 38307061 -110476411 + GC_rich Low_complexity Low_complexity 1 50 0 505 296 11 11 chr11 38307525 38307775 -110475697 + GA-rich Low_complexity Low_complexity 1 250 0 202 225 18 153 chr11 38307995 38308106 -110475366 + MIR SINE MIR 23 118 -90 212 234 273 0 chr11 38308566 38308643 -110474829 + L2 LINE L2 3216 3313 0 236 270 16 71 chr11 38308970 38309096 -110474376 - L1ME3 LINE L1 -89 6056 5938 1686 243 73 19 chr11 38309183 38309772 -110473700 - L1ME3 LINE L1 -265 5888 5268 2001 123 40 17 chr11 38309785 38310085 -110473387 - AluSx SINE Alu -5 307 1 363 227 125 16 chr11 38310120 38310248 -110473224 - L1ME3 LINE L1 -905 5224 5083 1284 284 106 20 chr11 38310252 38310815 -110472657 - L1ME3 LINE L1 -1147 4982 4469 856 199 32 0 chr11 38310815 38310971 -110472501 + FRAM SINE Alu 1 161 -5 1284 284 106 20 chr11 38310971 38311474 -110471998 - L1ME3 LINE L1 -1660 4469 3824 1537 182 7 18 chr11 38311575 38311850 -110471622 - AluJo SINE Alu -20 292 21 419 269 48 70 chr11 38311989 38312301 -110471171 - L1ME3 LINE L1 -2323 3806 3502 3832 92 5 4 chr11 38312392 38312945 -110470527 - L1PA11 LINE L1 0 6174 5621 404 292 0 23 chr11 38312964 38313135 -110470337 - L1ME3 LINE L1 -2646 3483 3317 278 259 62 45 chr11 38313354 38313466 -110470006 - L1ME3 LINE L1 -5478 641 528 2061 126 0 11 chr11 38313654 38313976 -110469496 - AluSq SINE Alu 0 319 1 2057 136 3 3 chr11 38313998 38314320 -110469152 - AluSx SINE Alu 0 312 1 357 225 45 9 chr11 38314483 38314594 -110468878 - L1MD3 LINE L1 -155 7840 7726 * 613 185 0 8 chr11 38314585 38314715 -110468757 - L1MC3 LINE L1 -314 7471 7343 244 202 164 39 chr11 38314715 38314819 -110468653 - L1MC3 LINE L1 -1902 5906 5790 495 272 139 11 chr11 38315263 38315443 -110468029 - L2 LINE L2 0 3313 3111 490 280 78 16 chr11 38315473 38315666 -110467806 + MIR SINE MIR 58 262 0 511 226 107 79 chr11 38316348 38316600 -110466872 + MER112 DNA MER1_type 2 260 0 437 278 147 28 chr11 38317253 38317505 -110465967 - L2 LINE L2 -62 3251 2970 281 310 0 0 chr11 38318400 38318487 -110464985 + (TG)n Simple_repeat Simple_repeat 2 88 0 246 267 155 26 chr11 38318882 38318998 -110464474 - L2 LINE L2 -5 3308 3178 332 360 70 0 chr11 38319256 38319370 -110464102 + L2 LINE L2 3122 3243 -29 919 252 78 87 chr11 38319517 38319774 -110463698 - MLT1J LTR MaLR -37 474 221 1889 99 0 0 chr11 38319774 38320017 -110463455 - AluSc SINE Alu -66 243 1 919 252 78 87 chr11 38320017 38320232 -110463240 - MLT1J LTR MaLR -290 221 6 738 299 14 0 chr11 38320249 38320463 -110463009 + MIR SINE MIR 46 262 0 577 274 130 9 chr11 38321199 38321429 -110462043 - MIR SINE MIR -3 259 2 39 22 0 0 chr11 38321579 38321625 -110461847 + AT_rich Low_complexity Low_complexity 1 46 0 282 269 77 0 chr11 38321709 38321813 -110461659 - MIR SINE MIR 0 262 151 661 295 183 38 chr11 38321870 38322580 -110460892 - L2 LINE L2 0 3313 2497 192 68 45 23 chr11 38322777 38322821 -110460651 + C-rich Low_complexity Low_complexity 1 45 0 1656 160 48 0 chr11 38322829 38323097 -110460375 - AluSx SINE Alu -31 281 1 970 264 32 38 chr11 38323694 38324009 -110459463 - MER102a DNA MER1_type 0 330 18 611 257 7 7 chr11 38324026 38324166 -110459306 - MIR3 SINE MIR -48 160 21 414 284 40 44 chr11 38324617 38324842 -110458630 - L1MC4a LINE L1 -1902 5906 5683 227 277 72 12 chr11 38324907 38324990 -110458482 - L1MC4a LINE L1 -596 5570 5483 217 298 123 18 chr11 38325251 38325365 -110458107 + MIR SINE MIR 53 178 -84 1102 84 0 0 chr11 38326150 38326292 -110457180 - AluSg/x SINE Alu -6 306 165 567 285 62 60 chr11 38326315 38326684 -110456788 + MER115 DNA AcHobo 133 502 -191 21 36 0 0 chr11 38327934 38327962 -110455510 + AT_rich Low_complexity Low_complexity 1 28 0 255 333 37 0 chr11 38328027 38328108 -110455364 - L2 LINE L2 -52 3220 3137 933 230 59 14 chr11 38328142 38328342 -110455130 - MIR SINE MIR -26 236 24 799 191 181 35 chr11 38328342 38328624 -110454848 + MER33 DNA MER1_type 1 323 -1 933 230 59 14 chr11 38328624 38328645 -110454827 - MIR SINE MIR -238 24 5 505 314 101 14 chr11 38328666 38328873 -110454599 - MIR SINE MIR -13 249 25 539 179 0 0 chr11 38328895 38328979 -110454493 - FRAM/FAM SINE Alu -95 81 1 22 35 0 0 chr11 38329046 38329075 -110454397 + AT_rich Low_complexity Low_complexity 1 29 0 2322 70 0 0 chr11 38329868 38330154 -110453318 - AluSg SINE Alu -19 291 6 228 35 0 0 chr11 38330554 38330583 -110452889 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 206 316 0 0 chr11 38330598 38330655 -110452817 - MIR SINE MIR -7 255 199 817 121 50 111 chr11 38330655 38330744 -110452728 - L1MB3 LINE L1 -8 6175 6103 2183 129 0 3 chr11 38330744 38331055 -110452417 - AluSx SINE Alu -2 310 1 817 121 50 111 chr11 38331055 38331163 -110452309 - L1MB3 LINE L1 -80 6103 5990 355 315 148 6 chr11 38331172 38331334 -110452138 - MIR SINE MIR -74 188 4 258 200 207 7 chr11 38332578 38332713 -110450759 - L1ME4a LINE L1 -1 6120 5959 911 215 16 0 chr11 38332887 38333073 -110450399 - MER5A DNA MER1_type 0 189 1 304 292 208 25 chr11 38334922 38335124 -110448348 - MIR SINE MIR -18 244 6 2001 124 39 28 chr11 38335611 38335836 -110447636 - MER47A DNA MER2_type -1957 366 134 2313 108 0 3 chr11 38335836 38336143 -110447329 - AluY SINE Alu -5 306 1 2001 124 39 28 chr11 38336143 38336279 -110447193 - MER47A DNA MER2_type -2189 134 1 193 359 108 24 chr11 38336361 38336528 -110446944 - MER5A DNA MER1_type 0 189 9 1047 174 108 0 chr11 38336599 38336811 -110446661 - MER46A DNA MER2_type -1 235 1 2150 87 204 22 chr11 38336821 38336841 -110446631 - MER57B LTR ERV1 0 434 419 2477 79 3 0 chr11 38336841 38337146 -110446326 + AluY SINE Alu 1 306 -5 2150 87 204 22 chr11 38337146 38337492 -110445980 - MER57B LTR ERV1 -15 419 1 1409 88 118 25 chr11 38337492 38337730 -110445742 - MER57B-int LTR ERV1 0 7537 7278 703 115 25 8 chr11 38337733 38337855 -110445617 - LTR54B LTR ERV1 -370 128 5 16069 102 59 42 chr11 38337855 38337986 -110445486 - MER57B-int LTR ERV1 -387 7150 7023 185 258 0 32 chr11 38337986 38338048 -110445424 + L3 LINE CR1 1065 1124 -453 16069 102 59 42 chr11 38338048 38340335 -110443137 - MER57B-int LTR ERV1 -514 7023 4776 2238 74 7 20 chr11 38340335 38340632 -110442840 - AluY SINE Alu -10 301 9 16069 102 59 42 chr11 38340632 38340765 -110442707 - MER57B-int LTR ERV1 -2761 4776 4647 2177 107 3 7 chr11 38340765 38341056 -110442416 + AluSc SINE Alu 1 290 -19 201 39 0 0 chr11 38341060 38341086 -110442386 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 16069 102 59 42 chr11 38341086 38341265 -110442207 - MER57B-int LTR ERV1 -2892 4645 4305 3144 37 3 0 chr11 38341265 38341647 -110441825 - L1PA4 LINE L1 -3 6152 5770 5979 24 0 7 chr11 38341647 38342357 -110441115 - L1PA4 LINE L1 0 6155 5451 5580 26 10 5 chr11 38342357 38343467 -110440005 - L1PA4 LINE L1 -374 5781 4668 * 6991 39 7 0 chr11 38343459 38344352 -110439120 + L1PA4 LINE L1 3798 4696 -1450 3589 163 72 57 chr11 38344352 38345393 -110438079 - MER57B-int LTR ERV1 -3233 4304 3248 747 103 27 55 chr11 38345380 38345526 -110437946 - MER57B-int LTR ERV1 -4615 2922 2781 * 567 157 61 26 chr11 38345522 38345637 -110437835 - MER57B-int LTR ERV1 -4908 2629 2511 * 3472 146 40 8 chr11 38345639 38346419 -110437053 - MER57B-int LTR ERV1 -4231 3585 648 42305 37 3 2 chr11 38346977 38353122 -110430350 + L1PA3 LINE L1 13 6154 -1 1181 94 0 0 chr11 38353195 38353355 -110430117 - MER57B-int LTR ERV1 -6585 952 793 * 4058 145 24 1 chr11 38353353 38354014 -110429458 - MER57B-int LTR ERV1 -6860 677 2 2991 108 9 0 chr11 38354015 38354442 -110429030 - MER57B LTR ERV1 0 434 4 3048 128 68 18 chr11 38354570 38355116 -110428356 - MER34C LTR ERV1 -12 573 1 1512 161 17 10 chr11 38355124 38355422 -110428050 + L1MB8 LINE L1 5877 6176 -2 441 219 30 112 chr11 38355596 38355765 -110427707 + MIR SINE MIR 64 218 -44 1153 168 0 16 chr11 38355776 38355961 -110427511 + AluJb SINE Alu 108 289 -23 21 0 0 0 chr11 38357265 38357286 -110426186 + AT_rich Low_complexity Low_complexity 1 21 0 325 209 23 35 chr11 38357493 38357579 -110425893 - MIR SINE MIR -109 153 69 312 321 74 33 chr11 38358458 38358673 -110424799 - MIR SINE MIR -29 233 10 321 82 0 0 chr11 38359597 38359646 -110423826 + (TG)n Simple_repeat Simple_repeat 2 50 0 2662 109 64 7 chr11 38359851 38360255 -110423217 - MSTA LTR MaLR 0 428 2 704 295 62 5 chr11 38360981 38361205 -110422267 + MIR SINE MIR 15 251 -11 1316 165 12 31 chr11 38361622 38361876 -110421596 + LTR8 LTR ERV1 443 691 0 378 295 104 49 chr11 38361923 38362106 -110421366 + MIR3 SINE MIR 15 207 -1 279 65 87 0 chr11 38362544 38362590 -110420882 - MADE1 DNA Mariner 0 80 31 5324 186 53 27 chr11 38362613 38365105 -110418367 - L1MC1 LINE L1 -5 6328 3783 2093 128 14 0 chr11 38365105 38365402 -110418070 - AluSx SINE Alu -11 301 1 5324 186 53 27 chr11 38365402 38365458 -110418014 - L1MC1 LINE L1 -2550 3783 3730 312 215 149 8 chr11 38365493 38365614 -110417858 - L1ME4a LINE L1 -16 6105 5968 3819 97 16 2 chr11 38366517 38367063 -110416409 - MER41A LTR ERV1 0 554 1 493 196 0 15 chr11 38367192 38367325 -110416147 + CT-rich Low_complexity Low_complexity 2 132 0 206 221 104 52 chr11 38367427 38367504 -110415968 + MIR3 SINE MIR 108 188 -20 280 288 0 0 chr11 38368580 38368653 -110414819 + MIR3 SINE MIR 121 193 -15 409 350 68 16 chr11 38368953 38369252 -110414220 + L1MC4a LINE L1 5462 5785 -2023 393 58 0 0 chr11 38369252 38369304 -110414168 + (CA)n Simple_repeat Simple_repeat 2 53 0 409 350 68 16 chr11 38369304 38369370 -110414102 + L1MC4a LINE L1 5785 5846 -1962 271 228 0 25 chr11 38369433 38369512 -110413960 + L1ME4a LINE L1 5932 6008 -113 2146 117 0 7 chr11 38369534 38369834 -110413638 - AluSx SINE Alu -14 298 1 1919 142 20 13 chr11 38371076 38371379 -110412093 + AluJo SINE Alu 1 305 -7 409 306 145 32 chr11 38371812 38371998 -110411474 - MIR SINE MIR -51 211 5 2112 119 0 3 chr11 38372242 38372535 -110410937 + AluSx SINE Alu 1 292 -20 301 272 35 0 chr11 38372931 38373045 -110410427 - L1MC4 LINE L1 -1 8041 7924 680 303 32 25 chr11 38373118 38373399 -110410073 + L1MDa LINE L1 20 302 -6238 625 204 47 17 chr11 38373866 38374038 -110409434 + L1MDa LINE L1 908 1084 -5459 669 208 0 0 chr11 38374071 38374196 -110409276 + AluJb SINE Alu 179 303 -9 1840 193 111 31 chr11 38374196 38374817 -110408655 + L1MDa LINE L1 1098 1768 -4772 530 210 75 9 chr11 38374836 38375050 -110408422 - L1M4 LINE L1 -1621 4525 4298 570 51 26 0 chr11 38375050 38375128 -110408344 - Alu SINE Alu -12 300 221 2611 233 48 3 chr11 38375129 38375813 -110407659 - L1M4 LINE L1 -1833 4313 3599 395 344 72 79 chr11 38376688 38376993 -110406479 - L2 LINE L2 -33 3239 2937 460 325 51 47 chr11 38377231 38377486 -110405986 - MIR SINE MIR 0 262 7 21 36 0 0 chr11 38377645 38377673 -110405799 + AT_rich Low_complexity Low_complexity 1 28 0 690 311 13 17 chr11 38378450 38378688 -110404784 - MIR SINE MIR -14 248 12 189 0 0 0 chr11 38378693 38378714 -110404758 + (TTCA)n Simple_repeat Simple_repeat 2 22 0 491 287 16 8 chr11 38379040 38379162 -110404310 - MIR SINE MIR -69 139 17 728 353 21 25 chr11 38381066 38381349 -110402123 - L2 LINE L2 -1 3271 2990 433 367 38 9 chr11 38381388 38381598 -110401874 - L2 LINE L2 -464 2850 2635 791 187 0 15 chr11 38381600 38381734 -110401738 + FLAM_A SINE Alu 2 133 0 2282 109 0 10 chr11 38381752 38382065 -110401407 + AluSq SINE Alu 1 310 -3 765 228 124 39 chr11 38383361 38383594 -110399878 - MIR SINE MIR 0 262 10 1945 103 15 0 chr11 38384056 38384318 -110399154 + AluSc SINE Alu 36 301 -8 405 276 8 55 chr11 38384818 38384945 -110398527 + MIR SINE MIR 20 140 -68 394 254 95 24 chr11 38385973 38386099 -110397373 - L2 LINE L2 0 3272 3138 1713 177 0 41 chr11 38386118 38386441 -110397031 - AluJb SINE Alu 0 311 1 209 259 19 0 chr11 38386503 38386557 -110396915 - MIR SINE MIR -17 245 191 185 105 0 26 chr11 38386557 38386595 -110396877 + (TA)n Simple_repeat Simple_repeat 2 38 0 548 98 66 30 chr11 38386623 38387028 -110396444 + (TTATA)n Simple_repeat Simple_repeat 1 419 0 660 238 40 7 chr11 38387045 38387196 -110396276 - MIR SINE MIR -105 157 2 332 220 144 8 chr11 38387862 38387980 -110395492 + MER112 DNA MER1_type 121 254 -6 480 221 53 0 chr11 38388011 38388106 -110395366 - MER91B DNA MER1_type 0 190 91 326 256 33 50 chr11 38388129 38388250 -110395222 - MER91B DNA MER1_type -70 120 2 475 147 21 173 chr11 38388386 38388503 -110394969 - MER53 DNA DNA 0 189 110 864 151 29 0 chr11 38388503 38388675 -110394797 + L1MA7 LINE L1 6104 6280 -11 475 147 21 173 chr11 38388675 38388748 -110394724 - MER53 DNA DNA -79 110 28 5870 83 97 0 chr11 38388750 38389657 -110393815 - L1PA11 LINE L1 0 6174 5211 2072 138 41 17 chr11 38389687 38390181 -110393291 - MER6A DNA MER2_type 0 605 1 231 36 0 0 chr11 38390642 38390670 -110392802 + (T)n Simple_repeat Simple_repeat 1 28 0 502 295 34 43 chr11 38391482 38391689 -110391783 - MIR SINE MIR -56 206 2 390 206 159 0 chr11 38392637 38392744 -110390728 - MIR SINE MIR -67 195 72 429 297 17 0 chr11 38393316 38393434 -110390038 - L2 LINE L2 -3 3310 3191 1835 158 7 0 chr11 38393604 38393896 -110389576 + AluSx SINE Alu 1 294 -18 445 279 27 9 chr11 38394343 38394454 -110389018 - L2 LINE L2 -3 3310 3198 337 250 43 9 chr11 38394684 38394800 -110388672 - MER103 DNA DNA -46 120 1 318 200 40 13 chr11 38395261 38395336 -110388136 + L2 LINE L2 3196 3272 0 195 211 96 0 chr11 38395715 38395767 -110387705 + MIR SINE MIR 106 162 -100 302 264 77 51 chr11 38396069 38396232 -110387240 - MIR SINE MIR -37 171 6 665 303 51 73 chr11 38396232 38396644 -110386828 + L2 LINE L2 2344 2746 -568 504 311 84 15 chr11 38396817 38397205 -110386267 + L2 LINE L2 2793 3261 -52 185 309 136 37 chr11 38397289 38397451 -110386021 + MIR SINE MIR 41 218 -44 1670 128 0 13 chr11 38397930 38398165 -110385307 - AluSg SINE Alu -15 295 64 556 140 19 28 chr11 38398165 38398272 -110385200 + AluSg/x SINE Alu 203 308 -4 204 240 20 0 chr11 38398272 38398322 -110385150 - MIR SINE MIR -14 248 198 41663 45 3 0 chr11 38398706 38404844 -110378628 - L1PA4 LINE L1 0 6155 1 2813 153 31 24 chr11 38404865 38405439 -110378033 - L1MA8 LINE L1 -3 6288 5711 993 241 13 30 chr11 38405709 38405945 -110377527 - MIR SINE MIR -2 260 29 531 248 8 168 chr11 38406905 38407143 -110376329 + MIR SINE MIR 2 201 -61 245 279 44 0 chr11 38407141 38407209 -110376263 - L2 LINE L2 0 3313 3243 * 512 283 49 11 chr11 38407197 38407381 -110376091 - MLT1I LTR MaLR -24 385 195 459 275 47 62 chr11 38407628 38407821 -110375651 + MIR3 SINE MIR 19 208 0 21 36 0 0 chr11 38409340 38409368 -110374104 + AT_rich Low_complexity Low_complexity 1 28 0 210 353 191 15 chr11 38409402 38409538 -110373934 - L2 LINE L2 -1 3271 3112 195 129 0 0 chr11 38409941 38409972 -110373500 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 271 284 129 26 chr11 38410885 38411001 -110372471 + MIR SINE MIR 19 146 -62 236 128 0 21 chr11 38411782 38411829 -110371643 + MER63 DNA MER1_type 34 79 -982 316 284 21 60 chr11 38411875 38412080 -110371392 + MIR SINE MIR 20 258 -4 486 290 67 76 chr11 38412427 38412665 -110370807 - MIR SINE MIR -18 244 9 1039 289 36 30 chr11 38413055 38413391 -110370081 + MER102b DNA MER1_type 4 341 0 334 329 44 13 chr11 38413778 38413936 -110369536 + MIR SINE MIR 100 262 0 191 328 0 16 chr11 38413926 38413990 -110369482 + L2 LINE L2 3210 3272 0 * 5748 106 25 13 chr11 38414099 38414888 -110368584 - L1PA16 LINE L1 -1 6165 5387 2023 118 105 12 chr11 38414888 38415211 -110368261 + THE1A LTR MaLR 1 353 -2 12450 81 7 27 chr11 38415213 38415649 -110367823 + THE1A-int LTR MaLR 1 444 -1136 2118 122 0 3 chr11 38415649 38415944 -110367528 + AluSg SINE Alu 7 300 -10 12450 81 7 27 chr11 38415944 38417118 -110366354 + THE1A-int LTR MaLR 444 1580 0 2444 100 14 11 chr11 38417120 38417470 -110366002 + THE1A LTR MaLR 5 355 0 5748 106 25 13 chr11 38417470 38417684 -110365788 - L1PA16 LINE L1 -779 5387 5147 * 41014 68 11 3 chr11 38417671 38423775 -110359697 - L1PA5 LINE L1 -1 6153 1 2457 199 21 30 chr11 38423782 38424339 -110359133 - L1PA16 LINE L1 -973 5173 4622 248 290 121 16 chr11 38424759 38424883 -110358589 - MIR SINE MIR -70 192 56 691 243 91 69 chr11 38425045 38425420 -110358052 - L2 LINE L2 0 3313 2931 370 344 19 94 chr11 38426175 38426536 -110356936 - L2 LINE L2 -1 3271 2938 262 293 93 84 chr11 38426751 38426966 -110356506 - MLT1L LTR MaLR -205 410 194 252 293 57 57 chr11 38427074 38427197 -110356275 - MIR SINE MIR -61 201 79 574 247 62 81 chr11 38427249 38427492 -110355980 - MIR SINE MIR -24 238 6 227 95 48 0 chr11 38428793 38428835 -110354637 + (TATG)n Simple_repeat Simple_repeat 2 45 0 261 258 90 0 chr11 38430417 38430506 -110352966 - MIR SINE MIR -82 180 84 324 238 38 0 chr11 38430804 38430884 -110352588 + MIR SINE MIR 92 174 -88 347 292 46 15 chr11 38433682 38433812 -110349660 - MIR SINE MIR -109 153 20 362 338 116 28 chr11 38435756 38436110 -110347362 + L2 LINE L2 2843 3268 -4 513 265 151 29 chr11 38436194 38436272 -110347200 + L2 LINE L2 2996 3063 -250 180 0 0 0 chr11 38436272 38436292 -110347180 + (CA)n Simple_repeat Simple_repeat 2 21 0 513 265 151 29 chr11 38436292 38436492 -110346980 + L2 LINE L2 3063 3308 -5 445 230 50 43 chr11 38436512 38436651 -110346821 - MIR SINE MIR -116 146 7 201 307 159 23 chr11 38436837 38436925 -110346547 - L2 LINE L2 -39 3233 3134 2319 100 0 0 chr11 38437421 38437720 -110345752 + AluSx SINE Alu 1 299 -13 314 281 124 38 chr11 38437957 38438142 -110345330 + MIR SINE MIR 36 236 -26 285 323 98 23 chr11 38438174 38438307 -110345165 - MIR SINE MIR -108 154 12 866 297 194 11 chr11 38438970 38439682 -110343790 - L2 LINE L2 0 3313 2478 248 289 156 33 chr11 38439935 38440025 -110343447 + MIR SINE MIR 36 136 -72 616 221 107 99 chr11 38440034 38440287 -110343185 - MIR SINE MIR -3 259 5 2445 122 188 169 chr11 38441212 38441521 -110341951 + L1MC3 LINE L1 6761 7063 -722 284 300 8 25 chr11 38441521 38441641 -110341831 + MLT1F1 LTR MaLR 8 125 -442 2445 122 188 169 chr11 38441641 38442074 -110341398 + L1MC3 LINE L1 7063 7638 -147 2226 91 3 16 chr11 38442074 38442592 -110340880 - MER4A LTR ERV1 0 664 1 674 169 92 0 chr11 38442592 38442722 -110340750 + L1MC3 LINE L1 7635 7776 -9 315 269 188 43 chr11 38442795 38443119 -110340353 + L1ME4a LINE L1 5680 6050 -71 556 268 166 19 chr11 38443788 38443993 -110339479 + MIR SINE MIR 28 262 0 3931 76 362 2 chr11 38444197 38444804 -110338668 - LTR12 LTR ERV1 0 826 1 422 227 53 30 chr11 38446033 38446165 -110337307 - Charlie2a DNA MER1_type -11 2851 2717 932 180 0 17 chr11 38446181 38446359 -110337113 - Charlie2a DNA MER1_type -1206 1656 1482 868 240 19 39 chr11 38446546 38446804 -110336668 - Charlie2a DNA MER1_type -2527 255 3 291 279 26 65 chr11 38447017 38447171 -110336301 + L3 LINE CR1 1231 1378 -199 370 246 172 8 chr11 38447234 38447356 -110336116 - MIR SINE MIR -82 180 39 24 0 0 0 chr11 38447439 38447463 -110336009 + AT_rich Low_complexity Low_complexity 1 24 0 1950 128 35 3 chr11 38447622 38447911 -110335561 + AluSg SINE Alu 1 298 -12 300 367 75 0 chr11 38448202 38448322 -110335150 + L2 LINE L2 3139 3267 -5 401 255 184 10 chr11 38449261 38449457 -110334015 + MIR SINE MIR 33 262 0 332 251 140 41 chr11 38449807 38449978 -110333494 - L2 LINE L2 -14 3299 3112 627 332 43 17 chr11 38450247 38450479 -110332993 - MIR SINE MIR -23 239 2 21 57 0 0 chr11 38451841 38451876 -110331596 + AT_rich Low_complexity Low_complexity 1 35 0 216 0 0 0 chr11 38452380 38452404 -110331068 + (A)n Simple_repeat Simple_repeat 1 24 0 206 244 0 0 chr11 38454035 38454076 -110329396 + (CATA)n Simple_repeat Simple_repeat 2 42 0 222 270 146 0 chr11 38456017 38456106 -110327366 - MIR SINE MIR -76 132 31 359 288 70 53 chr11 38456622 38456845 -110326627 - MIR SINE MIR -21 241 5 300 222 28 0 chr11 38460934 38461006 -110322466 + MIR SINE MIR 183 256 -6 311 288 92 61 chr11 38461469 38461632 -110321840 + MIR3 SINE MIR 35 202 -6 242 204 0 0 chr11 38461703 38461752 -110321720 + (TG)n Simple_repeat Simple_repeat 1 49 0 2817 102 70 5 chr11 38461829 38462231 -110321241 + MSTA LTR MaLR 1 428 0 503 237 0 35 chr11 38462248 38462362 -110321110 + MER103 DNA DNA 2 111 -55 305 282 78 19 chr11 38462423 38462526 -110320946 - MIR3 SINE MIR -39 169 61 229 109 43 0 chr11 38462766 38462812 -110320660 + CT-rich Low_complexity Low_complexity 1 48 0 603 280 80 15 chr11 38464459 38464659 -110318813 + MIR SINE MIR 48 260 -2 407 273 35 14 chr11 38464733 38464876 -110318596 + L1ME LINE L1 5627 5772 -349 2222 106 0 7 chr11 38465811 38466113 -110317359 + AluSx SINE Alu 1 300 -12 418 278 97 7 chr11 38467045 38467189 -110316283 - MIR SINE MIR -45 217 61 416 268 128 0 chr11 38467539 38467703 -110315769 - MIR SINE MIR -68 194 10 273 235 122 20 chr11 38468233 38468331 -110315141 + MLT1L LTR MaLR 105 212 -403 307 264 193 36 chr11 38468528 38468668 -110314804 - MIR SINE MIR -79 183 22 497 302 71 42 chr11 38469235 38469447 -110314025 + L2 LINE L2 3055 3272 0 421 253 102 66 chr11 38470137 38470303 -110313169 + MIR SINE MIR 15 186 -76 206 255 0 39 chr11 38470568 38470619 -110312853 + MIR SINE MIR 23 71 -191 235 290 29 0 chr11 38470619 38470688 -110312784 - MER81 DNA DNA 0 114 44 22 0 0 0 chr11 38471544 38471566 -110311906 + AT_rich Low_complexity Low_complexity 1 22 0 2277 92 0 0 chr11 38471646 38471949 -110311523 + AluSx SINE Alu 1 303 0 387 137 0 129 chr11 38471992 38472116 -110311356 - Charlie7 DNA MER1_type -32 2580 2473 251 231 192 0 chr11 38472142 38472220 -110311252 - Charlie7 DNA MER1_type -2514 98 6 * 268 260 4 4 chr11 38472214 38472304 -110311168 - Charlie8 DNA MER1_type -991 1426 1366 722 261 5 21 chr11 38472361 38472549 -110310923 - Charlie8 DNA MER1_type -2145 272 88 441 291 202 5 chr11 38472634 38472837 -110310635 + MIR SINE MIR 20 262 0 499 283 50 17 chr11 38473064 38473244 -110310228 + MIR SINE MIR 4 189 -73 2837 210 73 53 chr11 38473336 38474125 -110309347 - MER21B LTR ERV1 -44 819 15 1335 224 60 72 chr11 38474153 38474640 -110308832 + LTR33 LTR ERVL 41 521 0 374 361 16 0 chr11 38474826 38474948 -110308524 - L2 LINE L2 -3 3269 3146 510 275 146 41 chr11 38475145 38475509 -110307963 + MLT1J LTR MaLR 201 602 -13 350 245 51 20 chr11 38475515 38475613 -110307859 - MIR3 SINE MIR -27 181 81 227 149 0 21 chr11 38476107 38476154 -110307318 + (CA)n Simple_repeat Simple_repeat 1 46 0 1950 166 65 39 chr11 38476295 38476452 -110307020 + MLT1A1 LTR MaLR 2 154 -211 2213 103 3 3 chr11 38476452 38476754 -110306718 + AluSg SINE Alu 1 302 -8 1950 166 65 39 chr11 38476754 38476951 -110306521 + MLT1A1 LTR MaLR 154 365 0 1260 209 125 70 chr11 38477390 38477878 -110305594 + MLT1H LTR MaLR 5 519 -30 685 303 43 0 chr11 38477900 38478108 -110305364 - MIR SINE MIR -12 250 34 2165 114 92 25 chr11 38478225 38478541 -110304931 + MER1B DNA MER1_type 1 337 0 1205 276 89 64 chr11 38478623 38479276 -110304196 + L2 LINE L2 2458 3107 -206 1704 111 8 0 chr11 38479283 38479526 -110303946 - AluSx SINE Alu -4 308 64 2191 90 11 0 chr11 38479851 38480128 -110303344 + AluSx SINE Alu 1 280 -32 180 0 0 0 chr11 38480130 38480150 -110303322 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 231 226 19 0 chr11 38480550 38480603 -110302869 - L2 LINE L2 -2 3270 3217 189 74 0 0 chr11 38480892 38480919 -110302553 + (T)n Simple_repeat Simple_repeat 1 27 0 197 283 50 0 chr11 38481790 38481850 -110301622 + MIR SINE MIR 121 183 -79 1140 211 125 14 chr11 38482184 38482683 -110300789 + MLT1E2 LTR MaLR 8 626 0 623 303 91 0 chr11 38482742 38482950 -110300522 + MIR SINE MIR 23 249 -13 1648 119 128 62 chr11 38483108 38483180 -110300292 - THE1C LTR MaLR 0 375 309 2295 129 0 0 chr11 38483180 38483490 -110299982 + AluSx SINE Alu 1 310 -2 1648 119 128 62 chr11 38483490 38483769 -110299703 - THE1C LTR MaLR -66 309 1 295 151 27 27 chr11 38484007 38484080 -110299392 - L1ME4a LINE L1 -114 6007 5935 1374 197 151 3 chr11 38484265 38484569 -110298903 - MLT1D LTR MaLR 0 505 157 438 274 27 7 chr11 38485179 38485325 -110298147 - MIR SINE MIR 0 262 114 1064 196 0 0 chr11 38485410 38485573 -110297899 + FAM SINE Alu 1 163 -12 423 250 83 30 chr11 38485634 38485802 -110297670 - L1MC4a LINE L1 -1938 5870 5694 180 0 0 0 chr11 38486329 38486349 -110297123 + (TTTAA)n Simple_repeat Simple_repeat 1 20 0 2312 80 7 10 chr11 38486349 38486639 -110296833 - AluSx SINE Alu -21 291 1 230 210 177 0 chr11 38486912 38486974 -110296498 - MLT1L LTR MaLR -77 538 466 468 179 0 63 chr11 38486989 38487084 -110296388 - L1MC4a LINE L1 -2177 5631 5543 2764 263 72 25 chr11 38487114 38488003 -110295469 + L1MC4a LINE L1 5256 6205 -1603 1727 160 3 35 chr11 38488003 38488321 -110295151 + AluJo SINE Alu 5 312 0 2764 263 72 25 chr11 38488321 38488498 -110294974 + L1MC4a LINE L1 6205 6372 -1436 919 265 71 48 chr11 38488511 38488847 -110294625 - MLT1I LTR MaLR -2 407 64 270 207 0 17 chr11 38489090 38489148 -110294324 + HERVL LTR ERVL 1863 1919 -3735 * 1208 307 21 50 chr11 38489147 38489531 -110293941 + HERVL LTR ERVL 2120 2458 -3196 1019 309 80 37 chr11 38489691 38489800 -110293672 - ERVL LTR ERVL -2156 3608 3505 2362 93 0 22 chr11 38489800 38490113 -110293359 - AluSc SINE Alu -3 306 1 1019 309 80 37 chr11 38490113 38490488 -110292984 - ERVL LTR ERVL -2259 3505 3103 333 265 66 42 chr11 38490527 38490693 -110292779 + HERVL LTR ERVL 3677 3846 -1918 334 270 35 26 chr11 38490779 38490894 -110292578 - ERVL LTR ERVL -1063 4701 4586 251 358 30 15 chr11 38490946 38491080 -110292392 + HERVL LTR ERVL 4386 4521 -964 801 184 0 8 chr11 38491185 38491310 -110292162 - AluSg1 SINE Alu -184 125 2 2368 75 6 12 chr11 38491310 38491642 -110291830 - L1M1 LINE L1 -4549 3016 2687 7903 28 1 0 chr11 38491693 38493218 -110290254 - L1PA3 LINE L1 0 6155 4627 4134 53 4 0 chr11 38493218 38493726 -110289746 + L1PA8A LINE L1 5361 5870 -261 638 300 111 25 chr11 38496240 38496979 -110286493 - L1M4 LINE L1 -3262 3120 2333 635 246 81 122 chr11 38497269 38498190 -110285282 - HAL1 LINE L1 -761 1746 863 577 216 36 30 chr11 38498634 38498801 -110284671 - MER53 DNA DNA 0 189 22 266 167 56 28 chr11 38499028 38499100 -110284372 - AluSp SINE Alu -127 176 103 13113 161 41 24 chr11 38499100 38501513 -110281959 - L1M1 LINE L1 -3912 3653 1200 6242 83 2 2 chr11 38501616 38502467 -110281005 + L1P LINE L1 4161 5011 -1135 4328 199 32 31 chr11 38502466 38503406 -110280066 + L1M1 LINE L1 12 952 -6613 * 1349 107 46 53 chr11 38503406 38503668 -110279804 + THE1C LTR MaLR 1 260 -115 2644 73 3 58 chr11 38503771 38504152 -110279320 + THE1A-int LTR MaLR 1221 1580 0 2444 100 14 11 chr11 38504154 38504504 -110278968 + THE1A LTR MaLR 5 355 0 968 188 25 5 chr11 38504510 38504707 -110278765 - L1P LINE L1 -786 5360 5160 18239 41 4 0 chr11 38504707 38507575 -110275897 - L1PA5 LINE L1 -3 6151 3275 14784 68 8 12 chr11 38507675 38510742 -110272730 - L1PA5 LINE L1 -3059 3087 15 428 275 98 50 chr11 38511031 38511369 -110272103 - L1ME LINE L1 -518 5635 5282 1900 141 40 17 chr11 38511398 38511695 -110271777 - AluSx SINE Alu -8 304 1 225 236 126 8 chr11 38511730 38511857 -110271615 - L1ME LINE L1 -905 5224 5083 1278 284 106 20 chr11 38511861 38512424 -110271048 - L1ME LINE L1 -1147 4982 4469 856 199 32 0 chr11 38512424 38512580 -110270892 + FRAM SINE Alu 1 161 -5 1278 284 106 20 chr11 38512580 38513083 -110270389 - L1ME LINE L1 -1660 4469 3824 1537 182 7 18 chr11 38513184 38513459 -110270013 - AluJo SINE Alu -20 292 21 418 269 48 70 chr11 38513598 38513910 -110269562 - L1ME LINE L1 -2323 3806 3502 3832 92 5 4 chr11 38514001 38514554 -110268918 - L1PA11 LINE L1 0 6174 5621 404 292 0 23 chr11 38514573 38514744 -110268728 - L1ME LINE L1 -2646 3483 3317 278 259 62 45 chr11 38514963 38515075 -110268397 - L1ME LINE L1 -5478 641 528 2061 126 0 11 chr11 38515263 38515589 -110267883 - AluSq SINE Alu 0 323 1 2068 133 3 3 chr11 38515611 38515933 -110267539 - AluSx SINE Alu 0 312 1 357 225 45 9 chr11 38516096 38516207 -110267265 - L1MD3 LINE L1 -155 7840 7726 * 613 185 0 8 chr11 38516198 38516328 -110267144 - L1MC3 LINE L1 -314 7471 7343 244 202 164 39 chr11 38516328 38516432 -110267040 - L1MC3 LINE L1 -1902 5906 5790 495 272 139 11 chr11 38516876 38517056 -110266416 - L2 LINE L2 0 3313 3111 490 280 78 16 chr11 38517086 38517279 -110266193 + MIR SINE MIR 58 262 0 511 226 107 79 chr11 38517961 38518213 -110265259 + MER112 DNA MER1_type 2 260 0 455 273 149 25 chr11 38518875 38519117 -110264355 - L2 LINE L2 -72 3241 2970 204 40 0 0 chr11 38520042 38520067 -110263405 + (TG)n Simple_repeat Simple_repeat 2 26 0 246 267 155 26 chr11 38520498 38520614 -110262858 - L2 LINE L2 -5 3308 3178 332 360 70 0 chr11 38520872 38520986 -110262486 + L2 LINE L2 3122 3243 -29 511 270 155 13 chr11 38521133 38521359 -110262113 - MLT1J LTR MaLR -37 474 217 1876 103 0 0 chr11 38521390 38521633 -110261839 - AluSc SINE Alu -66 243 1 197 410 0 0 chr11 38521872 38521955 -110261517 - MIR3 SINE MIR -8 200 118 243 0 0 0 chr11 38522272 38522299 -110261173 + (TC)n Simple_repeat Simple_repeat 1 27 0 650 257 135 33 chr11 38523010 38523313 -110260159 + MLT1J2 LTR MaLR 113 450 0 845 257 83 69 chr11 38523499 38523994 -110259478 + L1MC4a LINE L1 5326 5827 -1981 2361 94 0 0 chr11 38524523 38524830 -110258642 + AluSg SINE Alu 1 307 -3 889 295 68 4 chr11 38524987 38525598 -110257874 - MER115 DNA AcHobo -5 688 1 385 274 0 11 chr11 38527447 38527542 -110255930 - L2 LINE L2 -4 3309 3216 1259 109 0 0 chr11 38527545 38527710 -110255762 + AluSq SINE Alu 9 173 -140 1665 263 151 44 chr11 38527710 38528653 -110254819 - L2 LINE L2 -105 3208 2163 470 203 31 47 chr11 38528654 38528782 -110254690 + MER106A DNA MER1_type 111 236 0 207 315 144 0 chr11 38528783 38528894 -110254578 - L2 LINE L2 -1477 1837 1711 775 288 9 35 chr11 38528935 38529161 -110254311 - MIR SINE MIR -15 247 28 232 214 18 0 chr11 38529218 38529274 -110254198 + (TA)n Simple_repeat Simple_repeat 1 57 0 279 0 0 0 chr11 38529276 38529307 -110254165 + (CA)n Simple_repeat Simple_repeat 2 32 0 397 306 57 26 chr11 38531164 38531357 -110252115 + MIR SINE MIR 8 206 -56 25 31 0 0 chr11 38531810 38531842 -110251630 + AT_rich Low_complexity Low_complexity 1 32 0 2180 126 0 3 chr11 38532840 38533149 -110250323 + AluJb SINE Alu 1 308 -4 379 238 0 0 chr11 38533562 38533642 -110249830 + L1M1 LINE L1 418 497 -7068 421 277 15 22 chr11 38533697 38533834 -110249638 + L2 LINE L2 3176 3311 -2 383 335 49 57 chr11 38533861 38534106 -110249366 + L2 LINE L2 3028 3270 -2 493 193 9 37 chr11 38534570 38534679 -110248793 + MER7A DNA MER2_type 1 104 -242 4375 153 46 10 chr11 38534936 38535827 -110247645 - Tigger3b DNA MER2_type -1 1230 308 1383 167 0 9 chr11 38535845 38536061 -110247411 - AluJb SINE Alu -15 297 84 965 171 271 4 chr11 38536062 38536313 -110247159 - Tigger3b DNA MER2_type -913 318 1 10788 70 7 11 chr11 38536483 38538058 -110245414 + L1P LINE L1 3110 4677 -1469 234 229 14 14 chr11 38538676 38538746 -110244726 + MLT1K LTR MaLR 11 80 -508 380 214 51 8 chr11 38539029 38539146 -110244326 + MLT1K LTR MaLR 467 588 0 22 0 0 0 chr11 38539440 38539462 -110244010 + AT_rich Low_complexity Low_complexity 1 22 0 2272 153 33 19 chr11 38539879 38540298 -110243174 + MSTB1 LTR MaLR 8 432 0 290 345 146 12 chr11 38540316 38540487 -110242985 + MIR SINE MIR 48 241 -21 301 316 21 21 chr11 38591038 38591133 -110192339 + MIR SINE MIR 55 149 -113 3489 68 9 0 chr11 38591427 38591865 -110191607 + L1PB1 LINE L1 5709 6150 -1 614 244 120 19 chr11 38591890 38592099 -110191373 - MIR SINE MIR -24 238 9 2264 110 0 10 chr11 38592142 38592452 -110191020 + AluSq SINE Alu 1 307 -6 2171 122 0 28 chr11 38593601 38593922 -110189550 - AluSx SINE Alu 0 312 1 2287 212 10 21 chr11 38594126 38594645 -110188827 - L1P LINE L1 -1012 5134 4622 248 290 121 16 chr11 38595065 38595189 -110188283 - MIR SINE MIR -70 192 56 691 243 91 69 chr11 38595351 38595726 -110187746 - L2 LINE L2 0 3313 2931 370 344 19 94 chr11 38596481 38596842 -110186630 - L2 LINE L2 -1 3271 2938 262 293 93 84 chr11 38597057 38597272 -110186200 - MLT1L LTR MaLR -205 410 194 252 293 57 57 chr11 38597380 38597503 -110185969 - MIR SINE MIR -61 201 79 574 247 62 81 chr11 38597555 38597798 -110185674 - MIR SINE MIR -24 238 6 227 95 48 0 chr11 38599099 38599141 -110184331 + (TATG)n Simple_repeat Simple_repeat 2 45 0 261 258 90 0 chr11 38600723 38600812 -110182660 - MIR SINE MIR -82 180 84 324 238 38 0 chr11 38601110 38601190 -110182282 + MIR SINE MIR 92 174 -88 347 292 46 15 chr11 38603988 38604118 -110179354 - MIR SINE MIR -109 153 20 362 338 116 28 chr11 38606062 38606416 -110177056 + L2 LINE L2 2843 3268 -4 513 265 151 29 chr11 38606500 38606578 -110176894 + L2 LINE L2 2996 3063 -250 180 0 0 0 chr11 38606578 38606598 -110176874 + (CA)n Simple_repeat Simple_repeat 2 21 0 513 265 151 29 chr11 38606598 38606798 -110176674 + L2 LINE L2 3063 3308 -5 445 230 50 43 chr11 38606818 38606957 -110176515 - MIR SINE MIR -116 146 7 201 307 159 23 chr11 38607143 38607231 -110176241 - L2 LINE L2 -39 3233 3134 2319 100 0 0 chr11 38607727 38608026 -110175446 + AluSx SINE Alu 1 299 -13 314 281 124 38 chr11 38608263 38608448 -110175024 + MIR SINE MIR 36 236 -26 285 323 98 23 chr11 38608480 38608613 -110174859 - MIR SINE MIR -108 154 12 866 297 194 11 chr11 38609276 38609988 -110173484 - L2 LINE L2 0 3313 2478 248 289 156 33 chr11 38610241 38610331 -110173141 + MIR SINE MIR 36 136 -72 616 221 107 99 chr11 38610340 38610593 -110172879 - MIR SINE MIR -3 259 5 2416 123 188 169 chr11 38611518 38611827 -110171645 + L1MC3 LINE L1 6761 7063 -722 280 300 8 25 chr11 38611827 38611947 -110171525 + MLT1F1 LTR MaLR 8 125 -442 2416 123 188 169 chr11 38611947 38612380 -110171092 + L1MC3 LINE L1 7063 7638 -147 2223 91 3 16 chr11 38612380 38612898 -110170574 - MER4A LTR ERV1 0 664 1 666 169 92 0 chr11 38612898 38613028 -110170444 + L1MC3 LINE L1 7635 7776 -9 284 269 188 43 chr11 38613101 38613425 -110170047 + L1ME4a LINE L1 5680 6050 -71 495 268 166 19 chr11 38614094 38614299 -110169173 + MIR SINE MIR 28 262 0 3684 76 362 2 chr11 38614503 38615110 -110168362 - LTR12 LTR ERV1 0 826 1 412 242 45 23 chr11 38616339 38616471 -110167001 - Charlie2a DNA MER1_type -11 2851 2717 917 180 0 17 chr11 38616487 38616665 -110166807 - Charlie2a DNA MER1_type -1206 1656 1482 861 240 19 39 chr11 38616852 38617110 -110166362 - Charlie2a DNA MER1_type -2527 255 3 257 281 27 62 chr11 38617331 38617477 -110165995 + L3 LINE CR1 1238 1378 -199 324 245 21 11 chr11 38617568 38617662 -110165810 - MIR SINE MIR -129 133 39 24 0 0 0 chr11 38617745 38617769 -110165703 + AT_rich Low_complexity Low_complexity 1 24 0 1965 128 35 3 chr11 38617928 38618217 -110165255 + AluSg SINE Alu 1 298 -12 265 367 75 0 chr11 38618508 38618628 -110164844 + L2 LINE L2 3139 3267 -5 342 228 185 12 chr11 38619601 38619763 -110163709 + MIR SINE MIR 73 262 0 287 251 140 41 chr11 38620113 38620284 -110163188 - L2 LINE L2 -14 3299 3112 559 332 43 17 chr11 38620553 38620785 -110162687 - MIR SINE MIR -23 239 2 21 57 0 0 chr11 38622147 38622182 -110161290 + AT_rich Low_complexity Low_complexity 1 35 0 216 0 0 0 chr11 38622686 38622710 -110160762 + (A)n Simple_repeat Simple_repeat 1 24 0 206 244 0 0 chr11 38624341 38624382 -110159090 + (CATA)n Simple_repeat Simple_repeat 2 42 0 192 270 146 0 chr11 38626323 38626412 -110157060 - MIR SINE MIR -76 132 31 300 293 127 10 chr11 38626928 38627133 -110156339 - MIR SINE MIR -21 241 13 280 222 28 0 chr11 38631240 38631312 -110152160 + MIR SINE MIR 183 256 -6 267 288 92 61 chr11 38631775 38631938 -110151534 + MIR3 SINE MIR 35 202 -6 242 204 0 0 chr11 38632009 38632058 -110151414 + (TG)n Simple_repeat Simple_repeat 1 49 0 2656 102 70 5 chr11 38632135 38632537 -110150935 + MSTA LTR MaLR 1 428 0 499 237 0 35 chr11 38632554 38632668 -110150804 + MER103 DNA DNA 2 111 -55 272 282 78 19 chr11 38632729 38632832 -110150640 - MIR3 SINE MIR -39 169 61 229 109 43 0 chr11 38633072 38633118 -110150354 + CT-rich Low_complexity Low_complexity 1 48 0 543 280 80 15 chr11 38634765 38634965 -110148507 + MIR SINE MIR 48 260 -2 399 273 35 14 chr11 38635039 38635182 -110148290 + L1ME LINE L1 5627 5772 -349 2242 106 0 7 chr11 38636117 38636419 -110147053 + AluSx SINE Alu 1 300 -12 378 257 48 3 chr11 38637351 38637495 -110145977 - MIR SINE MIR -45 217 61 367 246 127 0 chr11 38637845 38637987 -110145485 - MIR SINE MIR -68 194 35 281 235 122 20 chr11 38638539 38638637 -110144835 + MLT1L LTR MaLR 105 212 -403 269 264 193 36 chr11 38638834 38638974 -110144498 - MIR SINE MIR -79 183 22 454 306 31 25 chr11 38639588 38639748 -110143724 + L2 LINE L2 3106 3266 -6 371 253 102 66 chr11 38640443 38640609 -110142863 + MIR SINE MIR 15 186 -76 186 255 0 39 chr11 38640874 38640925 -110142547 + MIR SINE MIR 23 71 -191 239 290 29 0 chr11 38640925 38640994 -110142478 - MER81 DNA DNA 0 114 44 22 0 0 0 chr11 38641850 38641872 -110141600 + AT_rich Low_complexity Low_complexity 1 22 0 2304 92 0 0 chr11 38641952 38642273 -110141199 + AluSx SINE Alu 1 321 0 374 137 0 129 chr11 38642316 38642440 -110141032 - Charlie7 DNA MER1_type -32 2580 2473 248 231 192 0 chr11 38642466 38642544 -110140928 - Charlie7 DNA MER1_type -2514 98 6 * 272 260 4 4 chr11 38642538 38642628 -110140844 - Charlie8 DNA MER1_type -991 1426 1366 717 261 5 21 chr11 38642685 38642873 -110140599 - Charlie8 DNA MER1_type -2156 261 77 378 291 202 5 chr11 38642958 38643161 -110140311 + MIR SINE MIR 20 262 0 460 238 17 7 chr11 38643415 38643568 -110139904 + MIR SINE MIR 34 189 -73 2829 210 73 53 chr11 38643660 38644449 -110139023 - MER21B LTR ERV1 -44 819 15 1359 222 60 72 chr11 38644477 38644964 -110138508 + LTR33 LTR ERVL 41 521 0 334 361 16 0 chr11 38645150 38645272 -110138200 - L2 LINE L2 -3 3269 3146 506 277 137 26 chr11 38645469 38645833 -110137639 + MLT1J LTR MaLR 201 602 -13 318 245 51 20 chr11 38645839 38645937 -110137535 - MIR3 SINE MIR -27 181 81 227 149 0 21 chr11 38646431 38646478 -110136994 + (CA)n Simple_repeat Simple_repeat 1 46 0 1835 166 65 39 chr11 38646619 38646776 -110136696 + MLT1A1 LTR MaLR 2 154 -211 2236 103 3 3 chr11 38646776 38647078 -110136394 + AluSg SINE Alu 1 302 -8 1835 166 65 39 chr11 38647078 38647275 -110136197 + MLT1A1 LTR MaLR 154 365 0 1278 217 125 70 chr11 38647714 38648202 -110135270 + MLT1H LTR MaLR 5 519 -30 624 303 43 0 chr11 38648224 38648432 -110135040 - MIR SINE MIR -12 250 34 2033 114 92 25 chr11 38648549 38648865 -110134607 + MER1B DNA MER1_type 1 337 0 1060 284 79 67 chr11 38648947 38649600 -110133872 + L2 LINE L2 2458 3107 -206 1733 107 8 0 chr11 38649607 38649850 -110133622 - AluSx SINE Alu -4 308 64 2215 90 11 0 chr11 38650174 38650451 -110133021 + AluSx SINE Alu 1 280 -32 180 0 0 0 chr11 38650453 38650473 -110132999 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 215 226 19 0 chr11 38650873 38650926 -110132546 - L2 LINE L2 -2 3270 3217 189 74 0 0 chr11 38651215 38651242 -110132230 + (T)n Simple_repeat Simple_repeat 1 27 0 182 283 50 0 chr11 38652113 38652173 -110131299 + MIR SINE MIR 121 183 -79 1140 209 122 15 chr11 38652507 38653006 -110130466 + MLT1E2 LTR MaLR 8 626 0 562 303 91 0 chr11 38653065 38653273 -110130199 + MIR SINE MIR 23 249 -13 1523 119 128 62 chr11 38653431 38653503 -110129969 - THE1C LTR MaLR 0 375 309 2310 129 0 0 chr11 38653503 38653813 -110129659 + AluSx SINE Alu 1 310 -2 1523 119 128 62 chr11 38653813 38654092 -110129380 - THE1C LTR MaLR -66 309 1 288 151 27 27 chr11 38654330 38654403 -110129069 - L1ME4a LINE L1 -114 6007 5935 1374 197 151 3 chr11 38654588 38654892 -110128580 - MLT1D LTR MaLR 0 505 157 399 274 27 7 chr11 38655502 38655648 -110127824 - MIR SINE MIR 0 262 114 1003 196 0 0 chr11 38655733 38655896 -110127576 + FAM SINE Alu 1 163 -12 407 250 83 30 chr11 38655957 38656125 -110127347 - L1MC4a LINE L1 -1938 5870 5694 180 0 0 0 chr11 38656652 38656672 -110126800 + (TTTAA)n Simple_repeat Simple_repeat 1 20 0 2336 80 7 10 chr11 38656672 38656962 -110126510 - AluSx SINE Alu -21 291 1 230 210 177 0 chr11 38657235 38657297 -110126175 - MLT1L LTR MaLR -77 538 466 467 179 0 63 chr11 38657312 38657407 -110126065 - L1MC4a LINE L1 -2177 5631 5543 2689 263 72 25 chr11 38657437 38658326 -110125146 + L1MC4a LINE L1 5256 6205 -1603 1736 160 3 35 chr11 38658326 38658644 -110124828 + AluJo SINE Alu 5 312 0 2689 263 72 25 chr11 38658644 38658821 -110124651 + L1MC4a LINE L1 6205 6372 -1436 907 265 74 51 chr11 38658834 38659170 -110124302 - MLT1I LTR MaLR -2 407 64 271 207 0 17 chr11 38659413 38659471 -110124001 + HERVL LTR ERVL 1863 1919 -3735 * 1202 307 21 50 chr11 38659470 38659854 -110123618 + HERVL LTR ERVL 2120 2458 -3196 1017 309 80 37 chr11 38660014 38660123 -110123349 - ERVL LTR ERVL -2156 3608 3505 2375 93 0 22 chr11 38660123 38660436 -110123036 - AluSc SINE Alu -3 306 1 1017 309 80 37 chr11 38660436 38660811 -110122661 - ERVL LTR ERVL -2259 3505 3103 338 265 66 42 chr11 38660850 38661016 -110122456 + HERVL LTR ERVL 3677 3846 -1918 342 270 35 26 chr11 38661102 38661217 -110122255 - ERVL LTR ERVL -1063 4701 4586 765 318 101 22 chr11 38661269 38661766 -110121706 + HERVL LTR ERVL 4428 4963 -801 1828 217 111 102 chr11 38662616 38663701 -110119771 + L1MC5 LINE L1 6768 7861 -100 411 204 66 122 chr11 38663743 38663939 -110119533 + LTR33A LTR ERVL 7 191 -332 2131 156 34 5 chr11 38663977 38664199 -110119273 - MLT1B LTR MaLR 0 390 151 1855 138 3 38 chr11 38664199 38664518 -110118954 + AluJb SINE Alu 5 312 0 2131 156 34 5 chr11 38664518 38664674 -110118798 - MLT1B LTR MaLR -239 151 1 1025 194 66 5 chr11 38664675 38664886 -110118586 - MER58A DNA MER1_type 0 224 1 543 259 37 16 chr11 38664922 38665111 -110118361 + LTR33 LTR ERVL 327 519 -2 2518 68 0 10 chr11 38665161 38665471 -110118001 + AluY SINE Alu 1 307 -4 2142 107 4 4 chr11 38665480 38665761 -110117711 + AluSx SINE Alu 1 281 -31 405 0 0 0 chr11 38665767 38665812 -110117660 + (TAA)n Simple_repeat Simple_repeat 2 46 0 290 294 0 0 chr11 38667147 38667232 -110116240 - L2 LINE L2 -2 3270 3186 284 263 17 42 chr11 38667259 38667377 -110116095 + (CATATA)n Simple_repeat Simple_repeat 4 118 0 1672 108 0 33 chr11 38667640 38667880 -110115592 - AluSg/x SINE Alu -11 301 70 1031 99 0 0 chr11 38667981 38668112 -110115360 - AluSg SINE Alu -179 131 1 2063 114 7 4 chr11 38668136 38668444 -110115028 + AluSx SINE Alu 1 309 0 271 167 90 135 chr11 38668553 38668685 -110114787 + LTR33A LTR ERVL 86 210 -313 586 163 0 0 chr11 38668685 38668777 -110114695 - MER58B DNA MER1_type 0 341 250 395 290 48 21 chr11 38668784 38668929 -110114543 + MIR SINE MIR 70 218 -44 1331 151 19 0 chr11 38669067 38669273 -110114199 - MER2 DNA MER2_type -135 210 1 519 199 6 12 chr11 38670827 38670998 -110112474 + (TGGA)n Simple_repeat Simple_repeat 4 173 0 469 246 0 11 chr11 38671052 38671231 -110112241 + (TGGA)n Simple_repeat Simple_repeat 2 178 0 268 238 19 0 chr11 38671245 38671350 -110112122 + (TGGA)n Simple_repeat Simple_repeat 1 107 0 971 254 14 5 chr11 38671397 38671617 -110111855 + Charlie8 DNA MER1_type 51 272 -2145 1807 216 25 8 chr11 38671726 38672083 -110111389 - MLT1A1 LTR MaLR -2 363 1 313 292 39 52 chr11 38672383 38672537 -110110935 + L2 LINE L2 2932 3083 -189 291 235 51 20 chr11 38672727 38672825 -110110647 - MER91C DNA MER1_type -13 127 27 494 287 55 42 chr11 38673928 38674165 -110109307 + MLT1K LTR MaLR 98 337 -251 844 173 60 0 chr11 38674357 38674507 -110108965 - AluJ SINE Alu -23 289 131 207 0 0 0 chr11 38674514 38674537 -110108935 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2030 109 50 0 chr11 38674548 38674831 -110108641 - AluSx SINE Alu -15 297 1 815 134 0 0 chr11 38676245 38676357 -110107115 - AluJ SINE Alu -185 127 16 22 0 0 0 chr11 38676768 38676790 -110106682 + AT_rich Low_complexity Low_complexity 1 22 0 692 297 108 20 chr11 38677608 38677951 -110105521 + L2 LINE L2 2847 3219 -94 5917 79 5 17 chr11 38677951 38678762 -110104710 - L1PA13 LINE L1 -2 6161 5361 443 257 0 9 chr11 38678762 38678867 -110104605 + L2 LINE L2 3210 3313 0 360 299 58 14 chr11 38678860 38679071 -110104401 + MIR SINE MIR 8 227 -35 * 4205 42 4 2 chr11 38679184 38679688 -110103784 + L1PA5 LINE L1 5649 6153 -1 213 290 16 0 chr11 38679898 38679960 -110103512 + (CA)n Simple_repeat Simple_repeat 2 64 0 374 288 90 40 chr11 38680484 38680646 -110102826 + MIR SINE MIR 19 189 -73 364 295 45 9 chr11 38680646 38680758 -110102714 + MER91C DNA MER1_type 1 116 -24 248 269 0 0 chr11 38680775 38680842 -110102630 + MIR SINE MIR 188 254 -8 1830 151 26 26 chr11 38680894 38681206 -110102266 + AluSx SINE Alu 1 312 0 263 333 19 28 chr11 38681561 38681669 -110101803 + HAL1 LINE L1 359 465 -2042 542 260 119 74 chr11 38681761 38682073 -110101399 + HAL1 LINE L1 589 914 -1593 209 108 27 0 chr11 38682090 38682127 -110101345 + GA-rich Low_complexity Low_complexity 3 40 0 1407 151 0 0 chr11 38682169 38682375 -110101097 + AluSg/x SINE Alu 90 295 -17 2336 92 0 0 chr11 38682379 38682672 -110100800 + AluY SINE Alu 1 293 -18 1130 262 108 52 chr11 38682702 38683630 -110099842 + HAL1 LINE L1 987 1969 -538 207 0 0 0 chr11 38684413 38684436 -110099036 + (T)n Simple_repeat Simple_repeat 1 23 0 769 261 102 33 chr11 38684492 38684914 -110098558 + HAL1 LINE L1 2057 2507 0 750 244 91 22 chr11 38684921 38685241 -110098231 - L1ME4a LINE L1 -12 6109 5768 1122 255 81 22 chr11 38685603 38686050 -110097422 + MLT1K LTR MaLR 1 473 -3 1975 139 0 33 chr11 38686371 38686674 -110096798 - AluSx SINE Alu -19 293 1 320 264 55 0 chr11 38686710 38686822 -110096650 - L1ME4a LINE L1 -326 5795 5691 245 203 78 0 chr11 38686840 38686904 -110096568 + MER69B DNA AcHobo 6 74 -1152 3053 238 80 5 chr11 38686935 38687759 -110095713 + MER69B DNA AcHobo 340 1225 -1 689 239 80 19 chr11 38687770 38687983 -110095489 + MIR SINE MIR 22 247 -15 2308 115 0 0 chr11 38687990 38688295 -110095177 - AluSx SINE Alu -7 305 1 228 317 70 0 chr11 38688312 38688454 -110095018 - L1ME4a LINE L1 -443 5678 5527 457 80 0 136 chr11 38688773 38688819 -110094653 - MADE1 DNA Mariner -4 76 46 2410 102 0 0 chr11 38688819 38689132 -110094340 + AluSq SINE Alu 1 313 0 457 80 0 136 chr11 38689132 38689173 -110094299 - MADE1 DNA Mariner -34 46 1 227 239 28 0 chr11 38690041 38690112 -110093360 + (TAGA)n Simple_repeat Simple_repeat 3 75 0 2007 114 0 46 chr11 38690413 38690719 -110092753 + AluSc SINE Alu 6 297 -12 23 0 0 0 chr11 38691287 38691310 -110092162 + AT_rich Low_complexity Low_complexity 1 23 0 230 301 106 8 chr11 38692134 38692257 -110091215 - L2 LINE L2 -497 2817 2683 268 217 178 39 chr11 38692313 38692543 -110090929 + L1ME4a LINE L1 5822 6083 -38 1459 188 28 35 chr11 38692558 38692671 -110090801 + AluJb SINE Alu 1 113 -208 1752 140 91 23 chr11 38692671 38693022 -110090450 + THE1C LTR MaLR 1 375 0 1459 188 28 35 chr11 38693022 38693231 -110090241 + AluJb SINE Alu 113 321 0 310 324 72 14 chr11 38693286 38693425 -110090047 - MIR SINE MIR -109 153 7 1728 232 96 8 chr11 38693458 38693958 -110089514 - L1ME2 LINE L1 -36 6197 5654 439 211 0 53 chr11 38693961 38694056 -110089416 + MER21B LTR ERV1 1 90 -773 2791 224 71 52 chr11 38694063 38694885 -110088587 + MER21B LTR ERV1 23 841 -22 2097 209 88 104 chr11 38694908 38695357 -110088115 - L1ME2 LINE L1 -585 5648 5193 327 49 0 0 chr11 38695357 38695398 -110088074 + (TG)n Simple_repeat Simple_repeat 2 42 0 2066 118 11 0 chr11 38695398 38695677 -110087795 - AluSg SINE Alu -28 282 1 2097 209 88 104 chr11 38695677 38696027 -110087445 - L1ME2 LINE L1 -1039 5194 4840 739 148 0 0 chr11 38696027 38696175 -110087297 + AluSg/x SINE Alu 170 317 0 2097 209 88 104 chr11 38696175 38696583 -110086889 - L1ME2 LINE L1 -1393 4840 4347 1846 265 87 15 chr11 38696583 38697330 -110086142 - L1ME2 LINE L1 -2320 3895 3095 5527 146 20 40 chr11 38697356 38697949 -110085523 - L1MA7 LINE L1 -9 6282 5679 2376 97 3 0 chr11 38697949 38698259 -110085213 - AluY SINE Alu 0 311 1 5527 146 20 40 chr11 38698259 38698490 -110084982 - L1MA7 LINE L1 -612 5679 5445 375 23 0 0 chr11 38698500 38698544 -110084928 + (TG)n Simple_repeat Simple_repeat 1 44 0 2193 113 3 0 chr11 38698544 38698824 -110084648 - AluSx SINE Alu -28 284 1 5527 146 20 40 chr11 38698824 38699499 -110083973 - L1MA7 LINE L1 -846 5445 4810 4298 267 52 56 chr11 38699490 38699729 -110083743 - L1ME2 LINE L1 -3108 3107 2869 * 2385 97 0 7 chr11 38699729 38700039 -110083433 + AluSg1 SINE Alu 1 308 -1 4298 267 52 56 chr11 38700039 38700232 -110083240 - L1ME2 LINE L1 -3346 2869 2677 2133 125 3 7 chr11 38700232 38700536 -110082936 + AluSx SINE Alu 1 303 -9 4298 267 52 56 chr11 38700536 38702931 -110080541 - L1ME2 LINE L1 -3538 2677 334 2292 97 0 3 chr11 38702931 38703230 -110080242 + AluSg SINE Alu 1 298 -12 4298 267 52 56 chr11 38703230 38703405 -110080067 - L1ME2 LINE L1 -5881 334 160 1751 130 114 19 chr11 38705086 38705394 -110078078 - MER1B DNA MER1_type 0 337 1 1283 169 142 15 chr11 38705469 38705736 -110077736 - AluJo SINE Alu 0 302 2 259 326 107 12 chr11 38705801 38706043 -110077429 + L2 LINE L2 2817 3081 -191 323 218 39 0 chr11 38706081 38706159 -110077313 - L2 LINE L2 -2 3270 3190 218 359 82 13 chr11 38706263 38706422 -110077050 + L2 LINE L2 3138 3307 -6 1713 210 161 20 chr11 38706662 38707153 -110076319 + MLT1F1 LTR MaLR 8 567 0 1752 190 8 37 chr11 38707283 38707608 -110075864 + MLT1A1 LTR MaLR 12 328 -37 2072 148 92 56 chr11 38707608 38708019 -110075453 + MSTB LTR MaLR 1 426 0 1752 190 8 37 chr11 38708019 38708045 -110075427 + MLT1A1 LTR MaLR 328 353 -12 694 181 47 7 chr11 38708188 38708337 -110075135 - MIR SINE MIR -18 244 90 306 288 94 20 chr11 38708375 38708589 -110074883 - MIR SINE MIR -20 242 12 216 287 46 11 chr11 38709363 38709450 -110074022 - MER5A DNA MER1_type -9 180 91 2349 77 17 10 chr11 38709466 38709766 -110073706 - AluY SINE Alu -4 307 6 545 161 0 0 chr11 38710150 38710237 -110073235 + AluSg/x SINE Alu 216 302 -10 2818 104 41 2 chr11 38710472 38710884 -110072588 + MSTA LTR MaLR 1 428 0 519 322 124 37 chr11 38710954 38711480 -110071992 - L2 LINE L2 0 3313 2743 358 224 105 81 chr11 38711563 38711773 -110071699 - LTR33 LTR ERVL -270 251 37 1255 259 73 59 chr11 38711880 38712400 -110071072 + L1MC4a LINE L1 1944 2455 -3760 1808 178 7 3 chr11 38712400 38712692 -110070780 - AluJo SINE Alu -16 296 4 1255 259 73 59 chr11 38712692 38712806 -110070666 + L1MC4a LINE L1 2455 2566 -3649 1963 168 7 0 chr11 38712806 38713116 -110070356 - AluJb SINE Alu 0 312 1 1255 259 73 59 chr11 38713116 38713478 -110069994 + L1MC4a LINE L1 2566 2919 -3296 1076 245 45 58 chr11 38713456 38713992 -110069480 + L1MC4a LINE L1 4522 5063 -1152 * 22 0 0 0 chr11 38714032 38714054 -110069418 + AT_rich Low_complexity Low_complexity 1 22 0 2207 91 3 14 chr11 38714057 38714353 -110069119 + AluY SINE Alu 1 293 -18 25 51 0 0 chr11 38714397 38714436 -110069036 + AT_rich Low_complexity Low_complexity 1 39 0 4012 242 101 72 chr11 38714464 38714790 -110068682 + L1MC4a LINE L1 5084 5399 -836 1925 148 30 3 chr11 38714790 38715094 -110068378 + AluSx SINE Alu 1 312 0 4012 242 101 72 chr11 38715094 38717087 -110066385 + L1MC4a LINE L1 5399 5994 -241 1577 177 57 114 chr11 38717078 38717658 -110065814 + L1ME1 LINE L1 5473 6085 -81 * 2135 160 18 3 chr11 38717658 38717990 -110065482 - MER1B DNA MER1_type 0 337 1 1577 177 57 114 chr11 38717990 38718051 -110065421 + L1ME1 LINE L1 6085 5993 -173 2352 92 3 3 chr11 38718051 38718357 -110065115 + AluY SINE Alu 1 306 -5 1577 177 57 114 chr11 38718357 38718505 -110064967 + L1ME1 LINE L1 5992 6147 -19 1491 200 104 11 chr11 38718595 38718974 -110064498 + L1MC4a LINE L1 6111 6242 0 * 1608 233 82 26 chr11 38718970 38719735 -110063737 + L1ME3 LINE L1 5152 6024 -138 298 174 0 0 chr11 38719739 38719785 -110063687 + L1ME3A LINE L1 6070 6115 -55 1231 284 80 29 chr11 38720970 38721555 -110061917 - MLT1L LTR MaLR 0 615 1 1763 147 17 31 chr11 38721646 38721938 -110061534 - AluJo SINE Alu -24 288 1 227 196 39 0 chr11 38722470 38722521 -110060951 + MLT1K LTR MaLR 532 584 -4 2117 117 3 0 chr11 38722934 38723224 -110060248 + AluSx SINE Alu 1 291 -21 327 49 0 0 chr11 38723226 38723267 -110060205 + (TG)n Simple_repeat Simple_repeat 2 42 0 281 316 32 0 chr11 38723280 38723375 -110060097 - MIR SINE MIR -119 143 46 382 169 15 0 chr11 38725026 38725088 -110058384 - MER20 DNA MER1_type 0 219 157 2160 154 76 21 chr11 38725088 38725147 -110058325 - MLT2A2 LTR ERVL 0 554 500 2298 117 0 3 chr11 38725147 38725456 -110058016 - AluY SINE Alu 0 311 4 2160 154 76 21 chr11 38725456 38725901 -110057571 - MLT2A2 LTR ERVL -54 500 1 771 134 148 28 chr11 38725903 38726045 -110057427 - MER20 DNA MER1_type -60 159 1 29 28 0 0 chr11 38726661 38726697 -110056775 + AT_rich Low_complexity Low_complexity 1 36 0 2147 107 14 3 chr11 38726840 38727130 -110056342 + AluSp SINE Alu 1 293 -20 297 243 29 39 chr11 38727199 38727302 -110056170 - L1ME4a LINE L1 -54 6067 5966 572 312 45 13 chr11 38727336 38727612 -110055860 - L1ME4a LINE L1 -330 5791 5542 2055 82 0 30 chr11 38727953 38728221 -110055251 - AluSg SINE Alu -15 295 36 1960 163 3 0 chr11 38728582 38728889 -110054583 - AluSx SINE Alu -4 308 1 417 281 43 30 chr11 38729710 38729874 -110053598 - MIR SINE MIR -38 224 59 2354 107 0 0 chr11 38729999 38730299 -110053173 - AluSc SINE Alu -9 300 1 1420 131 81 111 chr11 38730966 38731264 -110052208 + AluJb SINE Alu 9 297 -15 743 207 47 12 chr11 38731264 38731433 -110052039 - MER5A DNA MER1_type -14 175 1 571 279 31 6 chr11 38731455 38731616 -110051856 + MER5B DNA MER1_type 12 176 -2 679 286 6 11 chr11 38731624 38731806 -110051666 + MLT1J2 LTR MaLR 269 449 -1 640 295 141 36 chr11 38732913 38733419 -110050053 - MLT1K LTR MaLR -17 598 5 954 249 13 0 chr11 38734464 38734689 -110048783 + MIR SINE MIR 35 262 0 503 226 24 67 chr11 38735104 38735256 -110048216 + LTR37A LTR ERV1 18 162 -264 1895 203 136 80 chr11 38735256 38735493 -110047979 - MLT1E1 LTR MaLR 0 654 432 2164 118 0 13 chr11 38735493 38735808 -110047664 - AluY SINE Alu 0 311 1 1895 203 136 80 chr11 38735808 38736136 -110047336 - MLT1E1 LTR MaLR -222 432 57 2302 114 0 9 chr11 38736136 38736451 -110047021 + AluSx SINE Alu 1 312 0 290 148 222 0 chr11 38736484 38736538 -110046934 - MLT1E1 LTR MaLR -588 66 1 207 0 0 0 chr11 38736626 38736649 -110046823 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1558 185 20 33 chr11 38736655 38736958 -110046514 - AluJo SINE Alu -13 299 1 773 171 51 0 chr11 38736964 38737122 -110046350 + LTR37A LTR ERV1 255 420 -6 231 236 0 18 chr11 38737588 38737643 -110045829 + L2 LINE L2 3203 3256 -16 1630 155 39 10 chr11 38739070 38739379 -110044093 + MER33 DNA MER1_type 7 324 0 732 230 40 35 chr11 38739414 38739614 -110043858 - MER3 DNA MER1_type 0 209 9 1732 117 12 0 chr11 38739618 38739865 -110043607 + AluSg SINE Alu 56 305 -5 2301 100 0 3 chr11 38739916 38740216 -110043256 + AluSg SINE Alu 3 301 -9 2198 87 0 0 chr11 38741056 38741332 -110042140 + AluY SINE Alu 1 276 -35 281 136 0 0 chr11 38741332 38741376 -110042096 + AluY SINE Alu 251 294 -6 356 282 9 5 chr11 38741477 38741607 -110041865 - MIR SINE MIR -72 136 28 207 0 0 0 chr11 38742810 38742833 -110040639 + (T)n Simple_repeat Simple_repeat 1 23 0 2190 90 0 10 chr11 38742906 38743224 -110040248 + AluY SINE Alu 1 315 0 569 254 75 10 chr11 38743233 38743436 -110040036 - MIR SINE MIR -1 261 46 326 227 45 11 chr11 38743586 38743674 -110039798 - MLT1I LTR MaLR -4 405 315 496 278 23 15 chr11 38743684 38743809 -110039663 + MLT1G LTR MaLR 258 386 -204 2351 109 0 3 chr11 38743809 38744120 -110039352 - AluSq SINE Alu -3 310 1 1463 219 14 43 chr11 38744173 38744542 -110038930 + MLT1A2 LTR MaLR 1 358 -16 1533 159 3 65 chr11 38744548 38744857 -110038615 + AluJb SINE Alu 1 290 -22 638 210 112 0 chr11 38744922 38745065 -110038407 + MLT1A2 LTR MaLR 425 583 -7 460 224 96 0 chr11 38745106 38745231 -110038241 - L2 LINE L2 -1 3312 3176 1337 274 85 41 chr11 38745264 38745478 -110037994 - L1ME4a LINE L1 -3 6118 5915 2482 36 39 29 chr11 38745478 38745786 -110037686 - AluY SINE Alu 0 311 1 1337 274 85 41 chr11 38745786 38746228 -110037244 - L1ME4a LINE L1 -206 5915 5433 358 293 32 19 chr11 38746297 38746454 -110037018 + MIR SINE MIR 77 235 -27 302 129 52 164 chr11 38746671 38746787 -110036685 - MLT1H LTR MaLR -23 526 424 327 267 43 17 chr11 38746978 38747094 -110036378 - MLT1I LTR MaLR -272 137 19 247 97 0 0 chr11 38748576 38748607 -110034865 - Alu SINE Alu -246 55 25 1353 124 21 21 chr11 38748607 38748636 -110034836 + L1MA4A LINE L1 6067 6095 -208 2430 174 25 33 chr11 38748636 38749126 -110034346 + MER66B LTR ERV1 1 486 0 1353 124 21 21 chr11 38749126 38749330 -110034142 + L1MA4A LINE L1 6094 6300 -3 944 211 56 4 chr11 38750034 38750308 -110033164 - MER33 DNA MER1_type -41 283 1 422 259 42 48 chr11 38750477 38750643 -110032829 + L2 LINE L2 3148 3312 -1 376 316 65 24 chr11 38750661 38750829 -110032643 - MIR SINE MIR -74 188 14 372 43 0 0 chr11 38750870 38750916 -110032556 + (TG)n Simple_repeat Simple_repeat 1 46 0 381 192 0 0 chr11 38751416 38751489 -110031983 - MIR SINE MIR -6 256 184 2283 213 64 16 chr11 38751540 38752057 -110031415 - MLT1F LTR MaLR 0 542 1 748 253 5 5 chr11 38752088 38752282 -110031190 - MIR SINE MIR -1 261 68 2176 82 7 4 chr11 38752764 38753078 -110030394 + AluSg SINE Alu 1 315 0 480 188 31 0 chr11 38753865 38753961 -110029511 - L1ME1 LINE L1 -43 6123 6025 397 145 0 0 chr11 38753963 38754025 -110029447 - L1ME1 LINE L1 -392 5774 5713 504 260 153 0 chr11 38754330 38754480 -110028992 + MER5A DNA MER1_type 17 189 0 271 222 37 28 chr11 38754837 38754945 -110028527 + (CGGGG)n Simple_repeat Simple_repeat 3 111 0 26 36 0 0 chr11 38755050 38755078 -110028394 + GC_rich Low_complexity Low_complexity 1 28 0 36 23 0 0 chr11 38755680 38755723 -110027749 + GC_rich Low_complexity Low_complexity 1 43 0 201 121 0 0 chr11 38755992 38756025 -110027447 + (GGAGA)n Simple_repeat Simple_repeat 4 36 0 2016 112 51 10 chr11 38758736 38759032 -110024440 + AluSx SINE Alu 1 308 -4 297 0 0 0 chr11 38759946 38759979 -110023493 + (TG)n Simple_repeat Simple_repeat 1 33 0 659 207 141 35 chr11 38760271 38760469 -110023003 - MER20 DNA MER1_type 0 219 1 220 176 14 40 chr11 38762012 38762086 -110021386 + (TATATG)n Simple_repeat Simple_repeat 5 76 0 2264 95 3 10 chr11 38762310 38762614 -110020858 + AluSg SINE Alu 1 302 -8 1845 262 36 23 chr11 38762910 38763486 -110019986 - HsTC2 DNA Tc2 -1298 600 17 293 335 84 6 chr11 38763589 38763756 -110019716 - MIR SINE MIR -70 192 13 24 0 0 0 chr11 38765212 38765236 -110018236 + AT_rich Low_complexity Low_complexity 1 24 0 235 304 14 14 chr11 38765936 38766005 -110017467 + L2 LINE L2 3182 3250 -22 1880 117 0 0 chr11 38766505 38766772 -110016700 + AluSx SINE Alu 35 301 0 780 143 8 8 chr11 38767714 38767840 -110015632 + FLAM_A SINE Alu 1 126 -7 263 222 0 7 chr11 38767938 38768043 -110015429 + MER5A DNA MER1_type 14 189 0 450 283 113 30 chr11 38768046 38768236 -110015236 + MIR SINE MIR 12 226 -36 2338 74 3 55 chr11 38768236 38768561 -110014911 - AluY SINE Alu -3 308 1 450 283 113 30 chr11 38768561 38768600 -110014872 + MIR SINE MIR 226 260 -2 267 231 67 10 chr11 38768686 38768790 -110014682 - L1ME4a LINE L1 -169 5952 5843 2033 145 13 10 chr11 38769023 38769334 -110014138 + AluSx SINE Alu 1 312 0 563 294 55 29 chr11 38769385 38769623 -110013849 + L1ME4a LINE L1 5582 5825 -296 1021 192 35 10 chr11 38769630 38769833 -110013639 - MER3 DNA MER1_type 0 209 2 26 30 0 0 chr11 38770988 38771021 -110012451 + AT_rich Low_complexity Low_complexity 1 33 0 1823 155 0 48 chr11 38771148 38771458 -110012014 + AluSx SINE Alu 1 295 -17 728 270 88 72 chr11 38771641 38772093 -110011379 - L1ME3A LINE L1 -262 5902 5438 2199 94 3 3 chr11 38772093 38772402 -110011070 - AluSg1 SINE Alu 0 309 1 728 270 88 72 chr11 38772402 38772436 -110011036 - L1ME3A LINE L1 -726 5438 5406 438 324 71 13 chr11 38772842 38773067 -110010405 + MIR SINE MIR 15 252 -10 26 0 0 0 chr11 38773241 38773267 -110010205 + AT_rich Low_complexity Low_complexity 1 26 0 1371 62 11 0 chr11 38773267 38773444 -110010028 - L1MA2 LINE L1 -4 6300 6122 21 0 0 0 chr11 38774614 38774635 -110008837 + AT_rich Low_complexity Low_complexity 1 21 0 1903 189 62 46 chr11 38774692 38775146 -110008326 + LOR1b LTR ERV1 1 461 0 392 282 19 19 chr11 38775711 38775867 -110007605 - MIR SINE MIR -12 250 95 1905 156 7 7 chr11 38776216 38776511 -110006961 + AluJb SINE Alu 3 297 -15 2291 104 3 0 chr11 38777654 38777952 -110005520 + AluSg SINE Alu 1 299 -11 231 213 88 25 chr11 38781581 38781661 -110001811 - MIR SINE MIR -20 242 158 1664 238 57 9 chr11 38781661 38782098 -110001374 + MLT1C LTR MaLR 1 458 -9 374 219 0 0 chr11 38782126 38782208 -110001264 - MIR SINE MIR -111 151 70 1723 176 49 51 chr11 38782822 38783213 -110000259 + MLT1B LTR MaLR 1 390 0 2232 118 0 7 chr11 38784277 38784582 -109998890 + AluSx SINE Alu 1 303 -9 275 0 29 0 chr11 38784654 38784689 -109998783 + (TTTTG)n Simple_repeat Simple_repeat 1 36 0 1157 256 111 40 chr11 38784702 38784958 -109998514 - L1MC4a LINE L1 -751 5395 5539 1992 126 0 41 chr11 38784958 38785275 -109998197 - AluSx SINE Alu -4 308 5 1157 256 111 40 chr11 38785275 38785672 -109997800 - L1MC4a LINE L1 -606 5540 5172 1383 216 111 64 chr11 38785890 38786401 -109997071 - MLT1E LTR MaLR -11 582 3 286 242 88 11 chr11 38788139 38788230 -109995242 - L2 LINE L2 -31 3241 3144 216 67 0 0 chr11 38788346 38788376 -109995096 + (TG)n Simple_repeat Simple_repeat 2 31 0 1053 242 95 18 chr11 38788605 38788890 -109994582 - MLT1J LTR MaLR -98 413 107 1743 168 113 3 chr11 38789129 38789457 -109994015 - MLT1A1 LTR MaLR -1 364 1 234 214 276 0 chr11 38791640 38791738 -109991734 - MIR SINE MIR -21 241 117 21 0 0 0 chr11 38792222 38792243 -109991229 + AT_rich Low_complexity Low_complexity 1 21 0 525 274 51 6 chr11 38792761 38792936 -109990536 + MIR SINE MIR 14 196 -66 2128 165 38 65 chr11 38793581 38794055 -109989417 - MLT1C LTR MaLR -5 462 2 2306 118 0 0 chr11 38794357 38794662 -109988810 - AluSx SINE Alu -7 305 1 661 120 16 16 chr11 38794775 38794900 -109988572 + Charlie5 DNA MER1_type 2486 2610 -2 335 177 177 100 chr11 38795077 38795132 -109988340 + MLT1D LTR MaLR 48 97 -408 186 43 0 0 chr11 38795132 38795155 -109988317 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2174 80 29 7 chr11 38795158 38795433 -109988039 - AluSx SINE Alu -31 281 1 335 177 177 100 chr11 38795433 38795503 -109987969 + MLT1D LTR MaLR 98 187 -318 441 255 152 0 chr11 38795760 38795944 -109987528 - MIR SINE MIR -10 252 41 2381 89 7 0 chr11 38796135 38796438 -109987034 - AluSp SINE Alu -8 305 1 1412 178 56 24 chr11 38796440 38796727 -109986745 - AluJo SINE Alu -4 308 13 2832 78 0 22 chr11 38797054 38797424 -109986048 + THE1B LTR MaLR 3 364 0 427 281 111 59 chr11 38797981 38798287 -109985185 - MLT1I LTR MaLR 0 409 88 181 306 130 19 chr11 38798426 38798534 -109984938 + L2 LINE L2 3153 3272 0 5934 152 17 35 chr11 38798766 38799560 -109983912 - L1PA16 LINE L1 -9 6157 5350 1997 143 7 13 chr11 38799560 38799868 -109983604 - AluJb SINE Alu -6 306 1 5934 152 17 35 chr11 38799868 38800094 -109983378 - L1PA16 LINE L1 -816 5350 5122 2049 138 0 0 chr11 38800094 38800391 -109983081 - AluY SINE Alu -14 297 1 5934 152 17 35 chr11 38800391 38801441 -109982031 - L1PA16 LINE L1 -1044 5122 4123 215 313 89 47 chr11 38801534 38801692 -109981780 + MIR SINE MIR 34 205 -57 1946 186 36 43 chr11 38801692 38801934 -109981538 - MLT1C LTR MaLR -2 465 226 2061 107 31 24 chr11 38801934 38802224 -109981248 - AluSx SINE Alu -20 292 1 1946 186 36 43 chr11 38802224 38802449 -109981023 - MLT1C LTR MaLR -241 226 1 215 313 89 47 chr11 38802449 38802504 -109980968 + MIR SINE MIR 205 256 -6 336 24 0 0 chr11 38803372 38803413 -109980059 + (TG)n Simple_repeat Simple_repeat 2 42 0 2904 145 11 32 chr11 38803863 38804393 -109979079 + L1MB8 LINE L1 5659 6177 -1 243 282 38 84 chr11 38804556 38804687 -109978785 - MIR SINE MIR -59 149 25 543 144 189 0 chr11 38805644 38805734 -109977738 - Tigger1 DNA MER2_type -4 2414 2308 1070 72 0 0 chr11 38805736 38805874 -109977598 + AluY SINE Alu 173 310 -1 15251 127 14 3 chr11 38805874 38808158 -109975314 - Tigger1 DNA MER2_type -109 2309 1 260 290 58 36 chr11 38808454 38808592 -109974880 + MIR SINE MIR 78 218 -44 354 284 47 8 chr11 38809272 38809399 -109974073 - MIR SINE MIR -98 164 33 221 75 25 0 chr11 38810024 38810064 -109973408 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 334 348 9 0 chr11 38810472 38810587 -109972885 - L2 LINE L2 -2 3270 3155 231 247 0 65 chr11 38810589 38810666 -109972806 - L2 LINE L2 -1 3271 3200 443 330 58 15 chr11 38811425 38811684 -109971788 + L1MC4a LINE L1 5678 5949 -213 266 145 48 32 chr11 38811689 38811813 -109971659 + (TA)n Simple_repeat Simple_repeat 1 126 0 1271 32 0 6 chr11 38812711 38812867 -109970605 - L1PA4 LINE L1 -2 6153 5999 251 172 0 35 chr11 38813173 38813231 -109970241 - L1ME4a LINE L1 -56 6065 6010 315 0 0 0 chr11 38813267 38813302 -109970170 + (TG)n Simple_repeat Simple_repeat 1 35 0 374 217 63 28 chr11 38813592 38813735 -109969737 - L1ME4a LINE L1 -286 5835 5688 1925 128 179 16 chr11 38815212 38815580 -109967892 - MSTA LTR MaLR 0 428 1 9939 131 18 31 chr11 38815580 38817180 -109966292 - MSTA-int LTR MaLR 0 1580 3 1671 170 184 11 chr11 38817182 38817546 -109965926 - MSTA LTR MaLR 0 428 2 341 290 140 48 chr11 38817765 38817972 -109965500 + MIR SINE MIR 12 237 -25 528 265 96 41 chr11 38818070 38818289 -109965183 + MIR SINE MIR 12 242 -20 281 302 179 28 chr11 38819475 38819654 -109963818 + MIR SINE MIR 57 262 0 243 359 57 37 chr11 38821953 38822198 -109961274 + L2 LINE L2 2618 2867 -447 2134 112 3 0 chr11 38822318 38822613 -109960859 - AluSp SINE Alu -17 296 1 32 0 0 0 chr11 38822674 38822706 -109960766 + AT_rich Low_complexity Low_complexity 1 32 0 384 239 123 29 chr11 38823257 38823395 -109960077 + MIR SINE MIR 100 250 -12 4582 151 14 3 chr11 38823624 38824348 -109959124 - MER44D DNA MER2_type -1 604 1 3228 64 0 0 chr11 38824807 38825212 -109958260 - L1PA8 LINE L1 0 6172 5768 22 0 0 0 chr11 38826359 38826381 -109957091 + AT_rich Low_complexity Low_complexity 1 22 0 206 216 0 39 chr11 38826818 38826869 -109956603 + C-rich Low_complexity Low_complexity 3 51 0 743 254 44 4 chr11 38827008 38827236 -109956236 - L1ME3A LINE L1 -5 6165 5929 901 273 95 59 chr11 38828238 38828429 -109955043 - L1ME4a LINE L1 -158 5963 5780 8100 120 35 13 chr11 38828429 38829051 -109954421 - HSMAR2 DNA Mariner -1 1301 694 1804 126 39 0 chr11 38829051 38829337 -109954135 - AluSx SINE Alu -15 297 1 8100 120 35 13 chr11 38829337 38829986 -109953486 - HSMAR2 DNA Mariner -608 694 3 901 273 95 59 chr11 38829986 38830435 -109953037 - L1ME4a LINE L1 -341 5780 5300 24 53 0 0 chr11 38831765 38831803 -109951669 + AT_rich Low_complexity Low_complexity 1 38 0 346 286 197 63 chr11 38832294 38833137 -109950335 - L2 LINE L2 -528 2786 1831 1496 176 3 30 chr11 38833162 38833463 -109950009 - AluJb SINE Alu -19 293 1 276 258 30 0 chr11 38834082 38834174 -109949298 - MIR SINE MIR -47 161 64 202 283 172 0 chr11 38834948 38835047 -109948425 + MIR SINE MIR 33 148 -60 332 245 108 17 chr11 38835199 38835317 -109948155 - MIR3 SINE MIR -4 204 72 239 186 17 0 chr11 38835817 38835876 -109947596 + (TA)n Simple_repeat Simple_repeat 1 60 0 463 234 29 77 chr11 38835894 38836085 -109947387 - MIR SINE MIR -56 206 19 283 224 47 35 chr11 38836822 38836907 -109946565 - L1MC4 LINE L1 -30 8012 7927 2340 57 0 3 chr11 38836909 38837208 -109946264 - AluY SINE Alu -13 298 1 2240 105 0 0 chr11 38837294 38837598 -109945874 - AluSq SINE Alu -9 304 1 652 273 90 37 chr11 38837676 38837965 -109945507 - L1MD1 LINE L1 -278 5886 5614 4462 121 8 0 chr11 38837965 38838595 -109944877 + MER41B LTR ERV1 1 635 0 652 273 90 37 chr11 38838595 38839090 -109944382 - L1MD1 LINE L1 -550 5614 5060 219 239 0 0 chr11 38839711 38839757 -109943715 - MIR3 SINE MIR -3 205 160 305 273 68 0 chr11 38839774 38839862 -109943610 - L2 LINE L2 -1 3271 3178 324 270 110 10 chr11 38840000 38840100 -109943372 + MER58D DNA MER1_type 5 114 -272 * 1198 163 64 19 chr11 38840099 38840363 -109943109 + MER58D DNA MER1_type 92 367 -19 535 154 115 0 chr11 38840369 38840473 -109942999 + MIR SINE MIR 77 192 -70 2239 92 0 7 chr11 38840481 38840784 -109942688 + AluSc SINE Alu 1 301 -8 288 0 0 0 chr11 38841940 38841972 -109941500 + (TG)n Simple_repeat Simple_repeat 2 33 0 290 315 109 39 chr11 38843032 38843289 -109940183 - L2 LINE L2 -13 3259 2985 262 103 345 0 chr11 38843315 38843373 -109940099 + MADE1 DNA Mariner 3 80 0 2130 152 25 8 chr11 38843373 38843735 -109939737 - MLT1B LTR MaLR -22 368 1 395 317 154 32 chr11 38843822 38844021 -109939451 - L2 LINE L2 -457 2857 2684 1226 188 5 0 chr11 38844021 38844234 -109939238 - MER20 DNA MER1_type -1 218 5 395 317 154 32 chr11 38844234 38844346 -109939126 - L2 LINE L2 -630 2684 2508 2191 82 7 0 chr11 38844378 38844669 -109938803 - AluSq SINE Alu -20 293 1 364 282 68 18 chr11 38845270 38845433 -109938039 + MER117 DNA MER1_type 3 173 -24 341 314 168 34 chr11 38845655 38845977 -109937495 - L2 LINE L2 -530 2784 2420 222 352 40 24 chr11 38846249 38846374 -109937098 - L2 LINE L2 -213 3059 2933 237 296 56 14 chr11 38846557 38846628 -109936844 + L2 LINE L2 3193 3266 -6 213 342 139 38 chr11 38847016 38847174 -109936298 + MIR3 SINE MIR 34 207 -1 449 249 46 64 chr11 38847339 38847512 -109935960 - MIR SINE MIR -10 252 83 293 317 35 21 chr11 38848012 38848154 -109935318 - MIR SINE MIR -104 158 15 2042 116 3 3 chr11 38848815 38849109 -109934363 - AluSg SINE Alu -16 294 1 1418 164 7 37 chr11 38849432 38849701 -109933771 - AluJb SINE Alu -51 261 1 205 293 40 27 chr11 38849972 38850047 -109933425 + MIR SINE MIR 20 95 -113 2441 55 0 3 chr11 38850460 38850768 -109932704 - AluY SINE Alu -4 307 1 475 297 77 13 chr11 38850933 38851088 -109932384 + MIR SINE MIR 98 262 0 265 318 88 41 chr11 38851946 38852289 -109931183 - L1ME4a LINE L1 -217 5904 5546 26 64 0 0 chr11 38852365 38852412 -109931060 + AT_rich Low_complexity Low_complexity 1 47 0 355 272 88 41 chr11 38852706 38852853 -109930619 - MIR SINE MIR -15 247 94 1864 173 7 92 chr11 38854061 38854484 -109928988 + MLT1B LTR MaLR 3 389 -1 22 0 0 0 chr11 38854506 38854528 -109928944 + AT_rich Low_complexity Low_complexity 1 22 0 1797 169 0 0 chr11 38854528 38854818 -109928654 + AluSx SINE Alu 1 290 -22 1340 179 40 26 chr11 38854934 38855207 -109928265 + MLT1C LTR MaLR 1 277 -190 480 253 97 38 chr11 38855580 38855766 -109927706 + MIR SINE MIR 15 211 -51 984 161 21 16 chr11 38856842 38857028 -109926444 - MLT1C LTR MaLR -2 465 279 2512 74 15 87 chr11 38857059 38857248 -109926224 + THE1B LTR MaLR 1 202 -162 338 71 36 0 chr11 38857248 38857304 -109926168 - L1PB2 LINE L1 -4 6147 6090 3328 52 7 7 chr11 38857304 38857717 -109925755 - L1PA8 LINE L1 -5 6167 5749 2512 74 15 87 chr11 38857717 38857918 -109925554 + THE1B LTR MaLR 200 364 0 956 175 40 31 chr11 38857918 38858146 -109925326 - MLT1C LTR MaLR -186 281 52 28 0 0 0 chr11 38858386 38858414 -109925058 + AT_rich Low_complexity Low_complexity 1 28 0 396 284 45 7 chr11 38858623 38858778 -109924694 + Charlie8 DNA MER1_type 3 163 -2254 583 219 37 6 chr11 38858866 38859027 -109924445 + HsTC2 DNA Tc2 3 1894 -4 537 270 190 5 chr11 38859154 38859365 -109924107 + MIR SINE MIR 9 258 -4 258 236 308 4 chr11 38859386 38859528 -109923944 + MIR SINE MIR 58 246 -16 1802 194 9 9 chr11 38862275 38862611 -109920861 - MLT1A1 LTR MaLR -29 336 1 999 229 48 0 chr11 38862831 38863062 -109920410 + MIR SINE MIR 15 256 -6 218 222 0 0 chr11 38863248 38863293 -109920179 + A-rich Low_complexity Low_complexity 130 174 0 359 301 38 38 chr11 38863425 38863558 -109919914 + MER5A DNA MER1_type 54 186 -3 238 173 19 0 chr11 38863965 38864017 -109919455 + L1ME4a LINE L1 5995 6047 -74 533 223 142 71 chr11 38864044 38864255 -109919217 + MIR SINE MIR 2 227 -35 203 362 0 14 chr11 38864889 38864958 -109918514 + L3 LINE CR1 1394 1461 -116 738 113 0 0 chr11 38866160 38866284 -109917188 + (TGGA)n Simple_repeat Simple_repeat 3 126 0 990 117 0 0 chr11 38866312 38866491 -109916981 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 1188 108 6 0 chr11 38866596 38866763 -109916709 - AluSg SINE Alu -142 168 1 646 281 100 0 chr11 38866794 38867004 -109916468 - MIR SINE MIR -30 232 2 444 215 203 19 chr11 38867349 38867507 -109915965 - MER5A DNA MER1_type 0 189 3 217 344 62 10 chr11 38867547 38867643 -109915829 - MER5A DNA MER1_type -22 167 67 315 295 23 23 chr11 38867938 38868067 -109915405 + L2 LINE L2 3167 3295 -18 598 214 65 126 chr11 38868124 38868233 -109915239 - MIR SINE MIR -47 215 124 2326 86 0 0 chr11 38868233 38868535 -109914937 + AluY SINE Alu 1 302 -9 598 214 65 126 chr11 38868535 38868640 -109914832 - MIR SINE MIR -138 124 14 300 277 135 20 chr11 38869109 38869257 -109914215 + MIR SINE MIR 83 247 -15 2026 124 0 7 chr11 38869303 38869601 -109913871 - AluSx SINE Alu -16 296 1 598 305 28 6 chr11 38870172 38870349 -109913123 - MIR SINE MIR -47 215 35 254 192 0 19 chr11 38870480 38870532 -109912940 - MER20 DNA MER1_type -3 216 166 2181 168 15 32 chr11 38870534 38870691 -109912781 - LOR1b LTR ERV1 0 461 303 2834 70 13 11 chr11 38870691 38871064 -109912408 + THE1C LTR MaLR 1 374 -1 2181 168 15 32 chr11 38871064 38871311 -109912161 - LOR1b LTR ERV1 -158 303 64 637 147 0 10 chr11 38871471 38871573 -109911899 - L1MB7 LINE L1 -84 6100 6000 184 323 136 15 chr11 38871732 38871930 -109911542 + L2 LINE L2 1851 2072 -1242 553 261 51 7 chr11 38872083 38872221 -109911251 + MIR SINE MIR 23 166 -96 613 300 71 76 chr11 38872830 38872928 -109910544 + L2 LINE L2 2444 2541 -773 905 221 53 0 chr11 38872928 38873136 -109910336 + MER20 DNA MER1_type 1 219 0 613 300 71 76 chr11 38873136 38873319 -109910153 + L2 LINE L2 2541 2725 -589 1548 196 31 0 chr11 38873319 38873610 -109909862 + AluJb SINE Alu 1 300 -12 613 300 71 76 chr11 38873610 38873707 -109909765 + L2 LINE L2 2725 2821 -493 2050 194 16 7 chr11 38873812 38874249 -109909223 - L1M4 LINE L1 -1445 4701 4261 1786 113 3 78 chr11 38874249 38874568 -109908904 - AluJb SINE Alu -17 295 1 2590 203 73 17 chr11 38874590 38875279 -109908193 - L1M4 LINE L1 -3092 3054 2328 301 211 18 0 chr11 38875297 38875354 -109908118 + MER5B DNA MER1_type 121 178 0 390 360 16 16 chr11 38876964 38877150 -109906322 + L2 LINE L2 2905 3090 -182 208 148 0 56 chr11 38877214 38877268 -109906204 + (TAA)n Simple_repeat Simple_repeat 2 52 0 203 244 26 13 chr11 38877312 38877390 -109906082 + (TATAA)n Simple_repeat Simple_repeat 5 83 0 643 313 15 0 chr11 38877406 38877601 -109905871 - MIR SINE MIR -27 235 38 1565 160 31 24 chr11 38877629 38877917 -109905555 - AluJb SINE Alu -22 290 1 557 360 15 0 chr11 38878266 38878463 -109905009 - MIR SINE MIR -15 247 48 2191 94 7 0 chr11 38878467 38878764 -109904708 - AluY SINE Alu -12 299 1 200 263 200 38 chr11 38879646 38879726 -109903746 + L2 LINE L2 2878 2970 -302 221 300 0 0 chr11 38880657 38880717 -109902755 + MER5A DNA MER1_type 108 167 -22 193 169 127 56 chr11 38880662 38880733 -109902739 - MER5A DNA MER1_type -101 88 13 * 279 304 202 16 chr11 38881319 38881576 -109901896 + L1ME4a LINE L1 5602 5906 -215 352 247 37 0 chr11 38881622 38881703 -109901769 - L2 LINE L2 -4 3309 3226 448 143 71 12 chr11 38881720 38881804 -109901668 + MER5A DNA MER1_type 13 101 -88 313 279 23 47 chr11 38881867 38881996 -109901476 + HAL1b LINE L1 1222 1347 -1 499 259 56 7 chr11 38882554 38882697 -109900775 + MIR3 SINE MIR 4 153 -55 381 301 208 6 chr11 38883864 38884037 -109899435 + MIR SINE MIR 51 258 -4 487 300 109 32 chr11 38884162 38884609 -109898863 - L2 LINE L2 -108 3205 2712 566 201 56 84 chr11 38884827 38884847 -109898625 - L1MD3 LINE L1 -447 7548 7529 2400 188 117 4 chr11 38884847 38885352 -109898120 + MER68 LTR ERV1 1 562 0 566 201 56 84 chr11 38885352 38886163 -109897309 - L1MD3 LINE L1 -466 7529 6697 438 20 0 0 chr11 38886163 38886214 -109897258 + (TCCA)n Simple_repeat Simple_repeat 2 52 0 566 201 56 84 chr11 38886214 38886343 -109897129 - L1MD3 LINE L1 -1298 6697 6566 2098 89 3 7 chr11 38886343 38886634 -109896838 - AluSg1 SINE Alu -19 290 1 566 201 56 84 chr11 38886634 38887275 -109896197 - L1MD3 LINE L1 -1429 6566 5910 4646 166 95 11 chr11 38887281 38888639 -109894833 - MER52A LTR ERV1 0 1755 211 324 247 13 13 chr11 38889062 38889139 -109894333 - MER52A LTR ERV1 -1678 77 1 195 125 0 0 chr11 38889307 38889347 -109894125 + (ATG)n Simple_repeat Simple_repeat 2 41 0 572 287 108 27 chr11 38889354 38889478 -109893994 - MIR SINE MIR -1 261 148 1728 173 116 3 chr11 38889478 38889813 -109893659 - MER83C LTR ERV1 0 373 1 572 287 108 27 chr11 38889813 38889911 -109893561 - MIR SINE MIR -114 148 21 665 280 68 38 chr11 38890428 38890563 -109892909 + MIR SINE MIR 15 161 -101 3183 174 9 26 chr11 38890563 38891133 -109892339 - MER68 LTR ERV1 -2 560 1 665 280 68 38 chr11 38891133 38891233 -109892239 + MIR SINE MIR 161 257 -5 456 286 107 17 chr11 38891896 38892074 -109891398 - MIR SINE MIR -6 256 63 1875 145 3 0 chr11 38892175 38892465 -109891007 + AluJb SINE Alu 1 291 -21 1792 170 55 0 chr11 38892958 38893287 -109890185 - L1MC1 LINE L1 -4 6329 5983 331 287 64 11 chr11 38893316 38893410 -109890062 - L1ME4a LINE L1 -31 6090 5992 195 307 11 23 chr11 38893431 38893519 -109889953 + MIR SINE MIR 170 256 -6 414 0 0 0 chr11 38893684 38893730 -109889742 + (CA)n Simple_repeat Simple_repeat 2 47 0 1687 158 13 30 chr11 38893869 38894172 -109889300 - AluJb SINE Alu -14 298 1 655 195 8 16 chr11 38894284 38894412 -109889060 + FLAM_A SINE Alu 1 127 -6 854 212 74 17 chr11 38894446 38894702 -109888770 + L1MC5 LINE L1 6986 7252 -735 4010 207 80 40 chr11 38894782 38895550 -109887922 - L1MDa LINE L1 -4252 2288 1451 1781 138 3 48 chr11 38895550 38895861 -109887611 - AluJb SINE Alu -10 302 6 4010 207 80 40 chr11 38895861 38896323 -109887149 - L1MDa LINE L1 -5089 1451 1009 1525 223 123 14 chr11 38896887 38897479 -109885993 + L1MC5 LINE L1 7261 7917 -44 1525 178 0 26 chr11 38897663 38897966 -109885506 - AluJb SINE Alu -17 295 1 762 178 0 0 chr11 38897983 38898101 -109885371 - FLAM_C SINE Alu -24 119 2 442 258 238 33 chr11 38898813 38899053 -109884419 + L2 LINE L2 3022 3310 -3 856 263 94 5 chr11 38899133 38899357 -109884115 - MIR SINE MIR -8 254 11 973 175 6 0 chr11 38899379 38899539 -109883933 - FRAM SINE Alu -5 161 1 1482 209 3 40 chr11 38899561 38899858 -109883614 - AluJo SINE Alu -15 287 2 844 291 73 4 chr11 38899866 38900100 -109883372 - MIR SINE MIR -1 261 12 183 42 0 0 chr11 38901425 38901449 -109882023 + (TCCC)n Simple_repeat Simple_repeat 3 26 0 661 168 98 60 chr11 38902217 38902245 -109881227 - L1MA4A LINE L1 -155 6150 6125 418 179 51 17 chr11 38902245 38902362 -109881110 - L1MA4A LINE L1 0 6303 6183 661 168 98 60 chr11 38902362 38902549 -109880923 - L1MA4A LINE L1 -180 6125 5932 23 0 0 0 chr11 38903251 38903274 -109880198 + AT_rich Low_complexity Low_complexity 1 23 0 2879 183 40 40 chr11 38903491 38904114 -109879358 - LTR27 LTR ERV1 -2 634 12 690 250 16 37 chr11 38904235 38904423 -109879049 + MER58A DNA MER1_type 38 221 -3 404 299 70 59 chr11 38904426 38904479 -109878993 - L1ME LINE L1 -368 5796 5745 1945 130 0 3 chr11 38904479 38904784 -109878688 - AluSx SINE Alu 0 304 1 404 299 70 59 chr11 38904784 38904859 -109878613 - L1ME LINE L1 -419 5745 5672 1458 185 25 3 chr11 38904859 38905145 -109878327 + AluJo SINE Alu 9 300 -12 404 299 70 59 chr11 38905145 38905320 -109878152 - L1ME LINE L1 -492 5672 5488 302 251 112 11 chr11 38905362 38905541 -109877931 - L1ME LINE L1 -753 5393 5197 653 249 17 33 chr11 38906610 38906791 -109876681 + MER45A DNA AcHobo 1 178 0 407 147 107 0 chr11 38906794 38906869 -109876603 - MIR SINE MIR -126 136 54 454 172 73 81 chr11 38907499 38907771 -109875701 + L1MA4A LINE L1 5950 6280 -23 248 317 19 43 chr11 38908933 38909094 -109874378 - L1ME LINE L1 -633 5488 5332 419 311 93 0 chr11 38909334 38909495 -109873977 - L1ME1 LINE L1 -230 5936 5761 514 229 49 8 chr11 38909899 38910021 -109873451 + MER5A DNA MER1_type 1 127 -62 521 211 31 39 chr11 38910022 38910150 -109873322 + MER5A DNA MER1_type 61 187 -2 2104 72 4 7 chr11 38910405 38910683 -109872789 - AluSc SINE Alu -32 277 1 2444 50 0 3 chr11 38911831 38912133 -109871339 - AluY SINE Alu -10 301 1 332 230 149 0 chr11 38912816 38912890 -109870582 + MLT1F1 LTR MaLR 1 85 -508 1521 132 13 9 chr11 38912908 38913178 -109870294 - L1MB2 LINE L1 -17 6172 5902 2334 56 0 10 chr11 38913182 38913484 -109869988 - AluY SINE Alu -12 299 1 1281 108 11 0 chr11 38913745 38913931 -109869541 - L1MB2 LINE L1 -287 5896 5709 1514 220 101 45 chr11 38913943 38914407 -109869065 + MLT1F1 LTR MaLR 78 567 0 598 308 39 5 chr11 38914519 38914727 -109868745 - MIR SINE MIR 0 262 48 306 0 0 0 chr11 38915151 38915185 -109868287 + (TG)n Simple_repeat Simple_repeat 1 34 0 231 36 0 0 chr11 38915184 38915212 -109868260 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 2825 150 9 13 chr11 38915359 38915820 -109867652 + MLT1C LTR MaLR 9 467 0 315 231 41 74 chr11 38916978 38917099 -109866373 + MLT1H LTR MaLR 431 547 -2 2399 104 16 0 chr11 38917129 38917437 -109866035 - AluSq SINE Alu 0 313 1 2049 154 52 0 chr11 38917460 38917790 -109865682 + MER7A DNA MER2_type 2 346 0 573 186 11 85 chr11 38917845 38917970 -109865502 - MER104 DNA Tc2 -1718 180 72 2572 56 0 31 chr11 38917970 38918290 -109865182 + AluY SINE Alu 1 310 -1 573 186 11 85 chr11 38918290 38918352 -109865120 - MER104 DNA Tc2 -1826 72 7 411 306 63 81 chr11 38918356 38918689 -109864783 - L2 LINE L2 -71 3201 2875 883 394 116 16 chr11 38918739 38919127 -109864345 - MER31B LTR ERV1 -39 427 1 183 333 56 11 chr11 38919263 38919353 -109864119 - L2 LINE L2 -733 2581 2488 213 294 78 114 chr11 38920535 38920895 -109862577 - L2 LINE L2 0 3272 2926 2275 103 3 0 chr11 38921496 38921798 -109861674 - AluSg1 SINE Alu -6 303 1 379 242 0 62 chr11 38923398 38923526 -109859946 - MLT1J LTR MaLR -301 210 91 330 225 0 50 chr11 38923529 38923574 -109859898 - MLT1G LTR MaLR -417 173 132 2297 120 0 0 chr11 38923574 38923875 -109859597 - AluSx SINE Alu -11 301 1 330 225 0 50 chr11 38923875 38923909 -109859563 - MLT1G LTR MaLR -458 132 98 933 265 153 30 chr11 38924749 38925255 -109858217 + MLT1G LTR MaLR 1 589 -1 232 220 20 0 chr11 38925687 38925737 -109857735 - L2 LINE L2 -31 3241 3191 396 204 129 0 chr11 38925864 38925957 -109857515 + MIR SINE MIR 18 122 -140 34 0 0 0 chr11 38926569 38926603 -109856869 + AT_rich Low_complexity Low_complexity 1 34 0 2195 101 3 52 chr11 38926732 38927059 -109856413 - AluSx SINE Alu -1 311 1 322 215 92 53 chr11 38927932 38928102 -109855370 + MER20 DNA MER1_type 34 212 -7 495 312 0 14 chr11 38928107 38928248 -109855224 - MIR3 SINE MIR -51 157 19 243 88 0 0 chr11 38928414 38928448 -109855024 + (GA)n Simple_repeat Simple_repeat 1 34 0 1479 184 27 36 chr11 38928567 38928898 -109854574 - L1MB8 LINE L1 0 6178 5851 921 102 32 91 chr11 38928903 38929089 -109854383 + MER30B DNA MER1_type 1 175 -15 2356 171 28 36 chr11 38929125 38930019 -109853453 - L1MB8 LINE L1 -433 5745 4861 297 238 16 0 chr11 38930320 38930383 -109853089 - MIR SINE MIR -19 243 180 564 256 36 0 chr11 38930449 38930586 -109852886 - MIR SINE MIR -89 173 32 1746 188 47 9 chr11 38930623 38930964 -109852508 + MLT1A1 LTR MaLR 1 354 -11 209 286 171 0 chr11 38930973 38931043 -109852429 + L2 LINE L2 3224 3305 -8 633 234 122 45 chr11 38932165 38932387 -109851085 - MIR SINE MIR -15 247 9 394 237 114 23 chr11 38932650 38932781 -109850691 + MIR SINE MIR 107 249 -13 281 292 102 15 chr11 38932828 38932965 -109850507 - L2 LINE L2 -12 3301 3153 806 168 0 42 chr11 38933003 38933146 -109850326 + FLAM_C SINE Alu 2 138 -5 1753 153 0 52 chr11 38933166 38933480 -109849992 + AluJo SINE Alu 12 310 0 302 303 16 16 chr11 38933787 38933909 -109849563 - MLT1H LTR MaLR -399 150 29 577 221 67 13 chr11 38934601 38934750 -109848722 - MIR SINE MIR -27 235 79 438 327 132 33 chr11 38934822 38934946 -109848526 + L2 LINE L2 2752 2862 -410 2001 118 0 0 chr11 38934946 38935216 -109848256 - AluSx SINE Alu -1 311 42 438 327 132 33 chr11 38935216 38935507 -109847965 + L2 LINE L2 2862 3222 -50 747 235 131 23 chr11 38935514 38935735 -109847737 + MIR SINE MIR 8 252 -10 224 243 108 27 chr11 38935734 38935808 -109847664 + L2 LINE L2 3234 3313 0 * 23 33 0 0 chr11 38937482 38937512 -109845960 + AT_rich Low_complexity Low_complexity 1 30 0 495 242 85 18 chr11 38937655 38937820 -109845652 + MIR SINE MIR 80 255 -7 368 226 212 7 chr11 38937932 38938069 -109845403 - MIR SINE MIR -25 237 73 201 74 0 0 chr11 38938380 38938407 -109845065 + (TA)n Simple_repeat Simple_repeat 1 27 0 2098 164 0 0 chr11 38938832 38939144 -109844328 + AluSx SINE Alu 1 312 0 289 326 126 19 chr11 38939146 38939361 -109844111 - L2 LINE L2 -619 2695 2458 779 273 130 28 chr11 38940006 38940328 -109843144 + L2 LINE L2 2955 3309 -4 301 252 130 23 chr11 38940463 38940594 -109842878 - L2 LINE L2 -220 3052 2908 348 278 57 91 chr11 38940946 38941155 -109842317 - MIR SINE MIR -37 225 24 473 167 33 0 chr11 38941858 38941948 -109841524 - L1MB3 LINE L1 -7 6176 6084 723 235 18 18 chr11 38942691 38942861 -109840611 - MIR SINE MIR -21 241 72 501 245 82 65 chr11 38943093 38943338 -109840134 + MIR SINE MIR 4 252 -10 233 135 0 58 chr11 38943464 38943516 -109839956 - Alu SINE Alu 0 133 85 1103 150 59 59 chr11 38943516 38943609 -109839863 - AluJo SINE Alu -92 220 128 465 19 0 0 chr11 38943609 38943663 -109839809 + (TTTTC)n Simple_repeat Simple_repeat 2 55 0 1103 150 59 59 chr11 38943663 38943789 -109839683 - AluJo SINE Alu -183 129 1 2344 63 47 13 chr11 38943802 38944102 -109839370 - AluY SINE Alu -1 310 1 244 254 18 0 chr11 38944236 38944291 -109839181 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 2364 102 3 0 chr11 38945892 38946197 -109837275 + AluSx SINE Alu 1 306 -6 502 285 101 50 chr11 38946485 38946616 -109836856 - MIR SINE MIR -19 243 99 2508 129 53 26 chr11 38946616 38946962 -109836510 + MSTA LTR MaLR 1 361 -67 2083 144 14 0 chr11 38946962 38947254 -109836218 - AluSx SINE Alu -16 296 1 2508 129 53 26 chr11 38947254 38947324 -109836148 + MSTA LTR MaLR 361 428 0 502 285 101 50 chr11 38947324 38947371 -109836101 - MIR SINE MIR -163 99 56 702 251 130 13 chr11 38948404 38948635 -109834837 + MIR SINE MIR 5 262 0 687 241 98 6 chr11 38949359 38949533 -109833939 - MER20 DNA MER1_type 0 219 30 366 250 194 49 chr11 38949772 38949916 -109833556 - MIR SINE MIR -26 236 72 234 312 136 8 chr11 38950573 38950698 -109832774 + L1MC/D LINE L1 5668 5808 -2000 1928 137 29 0 chr11 38950705 38950983 -109832489 - AluJb SINE Alu -25 287 2 402 21 0 0 chr11 38951253 38951300 -109832172 + (TC)n Simple_repeat Simple_repeat 1 47 0 415 341 29 24 chr11 38952953 38953161 -109830311 - Charlie8 DNA MER1_type -2158 259 51 553 276 119 5 chr11 38953271 38953481 -109829991 - MIR SINE MIR -4 258 25 956 178 10 59 chr11 38953873 38954165 -109829307 - MLT1B LTR MaLR 0 390 51 6324 73 21 6 chr11 38954165 38955016 -109828456 + SVA Other Other 3 866 -520 1238 39 5 29 chr11 38955031 38955238 -109828234 + SVA Other Other 665 866 -520 983 102 12 74 chr11 38955255 38955511 -109827961 + SVA Other Other 549 788 -598 6645 38 12 3 chr11 38955658 38956402 -109827070 + SVA Other Other 635 1385 -1 339 148 0 16 chr11 38956402 38956463 -109827009 - MLT1B LTR MaLR -330 60 1 1590 184 26 113 chr11 38956853 38957151 -109826321 - MLT1C LTR MaLR 0 467 145 240 35 0 0 chr11 38957151 38957180 -109826292 + (TTTTA)n Simple_repeat Simple_repeat 4 32 0 1822 174 7 0 chr11 38957186 38957468 -109826004 - AluSx SINE Alu -28 284 1 1590 184 26 113 chr11 38957468 38957480 -109825992 - MLT1C LTR MaLR -327 140 129 2654 67 0 3 chr11 38957480 38957792 -109825680 - AluY SINE Alu 0 311 1 1590 184 26 113 chr11 38957792 38957978 -109825494 - MLT1C LTR MaLR -338 129 7 2315 109 6 0 chr11 38958233 38958544 -109824928 - AluSq SINE Alu 0 313 1 254 306 131 79 chr11 38959347 38959576 -109823896 - L2 LINE L2 0 3272 3032 1830 171 0 10 chr11 38960623 38960921 -109822551 + AluJo SINE Alu 4 298 -14 1799 89 0 8 chr11 38960923 38961158 -109822314 + AluY SINE Alu 78 310 -1 189 337 112 0 chr11 38961443 38961541 -109821931 + L2 LINE L2 2918 3026 -246 215 250 0 0 chr11 38961701 38961741 -109821731 + MER91 DNA MER1_type 26 65 -75 485 281 121 21 chr11 38961760 38961964 -109821508 - MIR SINE MIR -34 228 4 569 249 41 86 chr11 38962663 38962860 -109820612 - MIR3 SINE MIR -1 207 20 897 208 11 0 chr11 38963109 38963292 -109820180 + MER68 LTR ERV1 376 560 -2 330 282 99 14 chr11 38963381 38963523 -109819949 + MIR SINE MIR 30 183 -79 250 279 192 0 chr11 38963553 38963657 -109819815 + L2 LINE L2 3186 3309 -4 287 293 50 57 chr11 38964394 38964534 -109818938 + MIR3 SINE MIR 29 167 -41 276 258 226 0 chr11 38964849 38964973 -109818499 - MER103 DNA DNA -7 159 8 735 243 32 26 chr11 38965883 38966072 -109817400 + MIR SINE MIR 45 234 -28 256 237 66 13 chr11 38966102 38966178 -109817294 + L2 LINE L2 3188 3267 -5 344 167 0 50 chr11 38966386 38966446 -109817026 + MER5B DNA MER1_type 2 58 -120 795 284 42 85 chr11 38968667 38969114 -109814358 + L2 LINE L2 2886 3313 0 1365 124 81 15 chr11 38969163 38969422 -109814050 - L1MA6 LINE L1 0 6300 6025 1612 190 3 7 chr11 38969560 38969855 -109813617 + AluJb SINE Alu 1 294 -18 1595 146 37 48 chr11 38969857 38970151 -109813321 + AluJb SINE Alu 1 291 -21 211 330 41 10 chr11 38971075 38971172 -109812300 - MIR SINE MIR -67 141 42 2316 85 0 0 chr11 38971186 38971469 -109812003 - AluSq SINE Alu -30 283 1 321 278 33 20 chr11 38971573 38971724 -109811748 - MIR SINE MIR -4 258 106 241 259 0 12 chr11 38971810 38971891 -109811581 + (TA)n Simple_repeat Simple_repeat 2 81 0 212 175 0 25 chr11 38971896 38971936 -109811536 - L2 LINE L2 -82 3231 3193 279 0 0 0 chr11 38971950 38971981 -109811491 + (TGGA)n Simple_repeat Simple_repeat 2 32 0 251 190 17 0 chr11 38974076 38974134 -109809338 + GA-rich Low_complexity Low_complexity 1 59 0 973 283 113 38 chr11 38975331 38975967 -109807505 - L1ME4a LINE L1 -6 6115 5432 441 125 0 31 chr11 38976316 38976412 -109807060 + (TCCC)n Simple_repeat Simple_repeat 1 93 0 530 242 176 0 chr11 38977107 38977260 -109806212 - MER5A DNA MER1_type 0 189 10 419 141 152 20 chr11 38977291 38977390 -109806082 + MLT1C LTR MaLR 6 117 -350 2056 162 63 33 chr11 38977396 38977792 -109805680 - MLT2D LTR ERVL -5 409 2 1267 189 37 109 chr11 38977792 38978170 -109805302 + MLT1C LTR MaLR 118 466 -1 270 81 0 0 chr11 38978850 38978887 -109804585 + (T)n Simple_repeat Simple_repeat 1 37 0 4204 125 20 20 chr11 38979524 38980228 -109803244 - L1MA4 LINE L1 -5 6295 5592 2596 116 0 5 chr11 38980239 38980609 -109802863 - L1PB1 LINE L1 -1 6866 6499 233 119 0 0 chr11 38980611 38980653 -109802819 + LTR66 LTR ERVL 398 439 -171 249 159 0 0 chr11 38980653 38980697 -109802775 + (TA)n Simple_repeat Simple_repeat 2 45 0 243 133 0 0 chr11 38980698 38980743 -109802729 - LTR66 LTR ERVL -172 438 394 9346 179 8 24 chr11 38980745 38981176 -109802296 - L1PB1 LINE L1 -361 6506 6069 2234 92 0 0 chr11 38981176 38981458 -109802014 - AluSc SINE Alu -11 298 17 9346 179 8 24 chr11 38981458 38983561 -109799911 - L1PB1 LINE L1 -798 6069 4008 4864 32 0 0 chr11 38983562 38984120 -109799352 - L1PA5 LINE L1 -1 6153 5596 6774 52 11 16 chr11 38984130 38985058 -109798414 + L1P2 LINE L1 4534 5461 -693 2405 84 7 3 chr11 38985058 38985368 -109798104 + AluY SINE Alu 1 311 0 6774 52 11 16 chr11 38985368 38985527 -109797945 + L1P2 LINE L1 5461 5619 -535 * 10667 132 41 11 chr11 38985513 38988161 -109795311 - L1PB1 LINE L1 -2837 4025 1292 876 109 159 0 chr11 38988166 38988304 -109795168 - L1PB1 LINE L1 -5705 1158 999 1296 109 0 0 chr11 38988319 38988512 -109794960 - L1PB1 LINE L1 -6670 193 1 189 290 48 97 chr11 38989488 38989548 -109793924 - MER5A DNA MER1_type -51 138 77 2240 123 0 0 chr11 38989548 38989840 -109793632 + AluSx SINE Alu 1 292 -20 189 290 48 97 chr11 38989840 38989924 -109793548 - MER5A DNA MER1_type -112 77 1 211 329 92 0 chr11 38989991 38990067 -109793405 + MIR SINE MIR 121 203 -59 1757 156 13 25 chr11 38990067 38990382 -109793090 + AluJo SINE Alu 1 311 -1 435 285 8 8 chr11 38990685 38990808 -109792664 - L2 LINE L2 -3 3310 3188 1182 243 53 57 chr11 38990854 38991377 -109792095 - L2 LINE L2 -455 2859 2339 417 258 107 21 chr11 38991696 38991908 -109791564 - MIR SINE MIR -26 236 18 264 161 0 0 chr11 38992232 38992294 -109791178 + CT-rich Low_complexity Low_complexity 2 63 0 272 327 19 0 chr11 38993964 38994071 -109789401 + MER5A DNA MER1_type 54 162 -27 1095 241 34 100 chr11 38994105 38994321 -109789151 - L1MEd LINE L1 -5025 1094 865 2278 110 7 0 chr11 38994321 38994622 -109788850 - AluSp SINE Alu -10 303 1 1095 241 34 100 chr11 38994622 38995027 -109788445 - L1MEd LINE L1 -5254 865 514 827 267 56 16 chr11 38996391 38996642 -109786830 + MIR SINE MIR 1 261 -1 413 204 43 0 chr11 38997136 38997229 -109786243 + L1ME2 LINE L1 6068 6164 0 210 281 12 12 chr11 38997651 38997733 -109785739 + (TA)n Simple_repeat Simple_repeat 1 82 0 1990 269 111 28 chr11 38998574 38999284 -109784188 + HAL1 LINE L1 2 770 -1737 372 121 190 43 chr11 38999304 38999420 -109784052 - L1MB7 LINE L1 0 6184 6046 452 216 14 68 chr11 38999444 38999520 -109783952 - L1MB7 LINE L1 -83 6101 6035 2335 109 7 0 chr11 38999520 38999824 -109783648 + AluSx SINE Alu 1 306 -6 452 216 14 68 chr11 38999824 38999895 -109783577 - L1MB7 LINE L1 -149 6035 5962 3210 42 0 0 chr11 38999895 39000274 -109783198 - L1PA5 LINE L1 0 6154 5776 421 141 22 87 chr11 39000274 39000366 -109783106 + HAL1 LINE L1 804 889 -1618 195 184 0 0 chr11 39000380 39000418 -109783054 + G-rich Low_complexity Low_complexity 1 38 0 1352 189 0 21 chr11 39000586 39000824 -109782648 + AluJo SINE Alu 58 290 -22 2843 244 138 51 chr11 39000836 39001578 -109781894 + HAL1 LINE L1 1107 1783 -724 1692 141 4 36 chr11 39001578 39001855 -109781617 + AluJo SINE Alu 11 278 -34 369 0 0 0 chr11 39001855 39001896 -109781576 + (TC)n Simple_repeat Simple_repeat 2 42 0 180 0 0 0 chr11 39001895 39001915 -109781557 + (TA)n Simple_repeat Simple_repeat 1 20 0 2843 244 138 51 chr11 39001896 39001914 -109781558 + HAL1 LINE L1 1783 1798 -709 234 91 0 0 chr11 39001914 39001947 -109781525 + (CA)n Simple_repeat Simple_repeat 2 34 0 2843 244 138 51 chr11 39001947 39002492 -109780980 + HAL1 LINE L1 1798 2507 0 667 262 0 18 chr11 39003166 39003330 -109780142 + MIR SINE MIR 8 168 -94 516 291 33 0 chr11 39003395 39003577 -109779895 + MIR SINE MIR 75 262 0 337 263 8 34 chr11 39004121 39004239 -109779233 + MIR SINE MIR 8 122 -140 207 231 0 39 chr11 39004252 39004304 -109779168 - MIR SINE MIR -94 168 119 303 331 41 0 chr11 39004490 39004652 -109778820 - MLT1J2 LTR MaLR -6 409 281 * 501 241 23 23 chr11 39004643 39004776 -109778696 - MLT1I LTR MaLR -276 133 1 246 363 22 30 chr11 39005372 39005507 -109777965 - L2 LINE L2 -1 3271 3138 458 305 72 47 chr11 39005515 39005751 -109777721 + MIR SINE MIR 13 254 -8 213 94 0 0 chr11 39005762 39005794 -109777678 + (CAT)n Simple_repeat Simple_repeat 2 33 0 327 315 144 0 chr11 39007961 39008107 -109775365 + MIR SINE MIR 2 168 -94 205 191 24 0 chr11 39008154 39008196 -109775276 + (CTG)n Simple_repeat Simple_repeat 1 43 0 1361 188 11 14 chr11 39008347 39008623 -109774849 + AluJo SINE Alu 1 275 -37 452 167 0 24 chr11 39008905 39008989 -109774483 + FRAM SINE Alu 71 152 -24 2386 80 3 0 chr11 39009828 39010130 -109773342 - AluY SINE Alu -8 303 1 228 67 0 0 chr11 39010497 39010527 -109772945 + (CA)n Simple_repeat Simple_repeat 2 31 0 1406 172 95 37 chr11 39010775 39010814 -109772658 - MLT1A2 LTR MaLR -6 368 333 2076 135 3 13 chr11 39010814 39011125 -109772347 + AluSx SINE Alu 1 308 -4 1406 172 95 37 chr11 39011125 39011433 -109772039 - MLT1A2 LTR MaLR -41 333 1 335 274 40 16 chr11 39011582 39011706 -109771766 + MIR SINE MIR 55 181 -81 2081 119 24 0 chr11 39012973 39013266 -109770206 - AluSq SINE Alu -12 301 2 195 286 18 0 chr11 39013431 39013487 -109769985 - MIR SINE MIR -155 107 51 601 219 19 113 chr11 39013806 39013869 -109769603 - MIR SINE MIR -10 252 185 1639 142 0 103 chr11 39013869 39014199 -109769273 - AluJo SINE Alu -6 296 1 601 219 19 113 chr11 39014199 39014391 -109769081 - MIR SINE MIR -77 185 21 220 213 0 0 chr11 39015242 39015289 -109768183 - MIR SINE MIR -128 134 88 2130 116 30 3 chr11 39015417 39015718 -109767754 - AluSq SINE Alu -4 309 1 2249 108 3 3 chr11 39017650 39017955 -109765517 - AluSg SINE Alu -5 305 1 726 244 105 66 chr11 39017983 39018315 -109765157 - MLT1F1 LTR MaLR -122 445 101 1199 200 96 4 chr11 39018319 39018559 -109764913 + AluJb SINE Alu 1 262 -50 226 294 10 69 chr11 39018728 39018830 -109764642 - L2 LINE L2 -455 2859 2764 786 171 21 88 chr11 39018987 39019180 -109764292 + L1MD3 LINE L1 6800 6979 -1016 949 241 51 83 chr11 39019182 39019556 -109763916 - MLT1A1 LTR MaLR 0 365 4 2432 204 151 33 chr11 39019563 39020283 -109763189 + L1MC4a LINE L1 6111 6182 -60 2402 79 0 0 chr11 39020283 39020587 -109762885 - AluSg SINE Alu -6 304 1 2432 204 151 33 chr11 39020587 39020657 -109762815 + L1MC4a LINE L1 6182 6242 0 21 0 0 0 chr11 39020990 39021011 -109762461 + AT_rich Low_complexity Low_complexity 1 21 0 219 228 18 0 chr11 39021095 39021152 -109762320 + L2 LINE L2 3215 3272 0 795 231 12 12 chr11 39022038 39022207 -109761265 - MER58A DNA MER1_type -36 188 20 574 363 172 9 chr11 39022260 39022591 -109760881 - L2 LINE L2 -499 2815 2431 456 70 0 0 chr11 39023440 39023497 -109759975 + AluJb SINE Alu 240 296 -16 331 223 18 0 chr11 39023956 39024068 -109759404 + CT-rich Low_complexity Low_complexity 5 118 0 437 271 68 8 chr11 39025597 39025715 -109757757 + MIR3 SINE MIR 39 163 -45 1096 255 135 10 chr11 39025816 39026361 -109757111 - L2 LINE L2 -48 3265 2640 319 222 0 0 chr11 39027296 39027359 -109756113 - MER103 DNA DNA -44 122 60 854 268 28 12 chr11 39027368 39027616 -109755856 - MIR SINE MIR -1 261 9 367 260 244 0 chr11 39027879 39028006 -109755466 + MIR SINE MIR 26 183 -79 324 167 119 196 chr11 39028333 39028501 -109754971 + MIR SINE MIR 16 170 -92 2076 163 54 50 chr11 39028505 39028965 -109754507 - MLT1C LTR MaLR 0 467 6 521 238 10 2 chr11 39029697 39029826 -109753646 + L1MC/D LINE L1 5682 5811 -365 666 207 0 0 chr11 39029952 39030063 -109753409 + MER58A DNA MER1_type 8 118 0 408 165 0 93 chr11 39030063 39030138 -109753334 + MER58 DNA MER1_type 2355 2420 0 24 32 0 0 chr11 39030217 39030248 -109753224 + AT_rich Low_complexity Low_complexity 1 31 0 2998 200 54 97 chr11 39030281 39031833 -109751639 + L1ME1 LINE L1 4687 6161 -5 1918 108 3 67 chr11 39031993 39032307 -109751165 + AluSx SINE Alu 1 294 -18 753 183 15 0 chr11 39032449 39032580 -109750892 + FLAM_A SINE Alu 1 133 0 510 285 33 23 chr11 39032776 39032990 -109750482 - L1MC4a LINE L1 -1898 5910 5695 1694 151 3 50 chr11 39032995 39033312 -109750160 - AluJo SINE Alu -10 302 1 480 254 36 104 chr11 39033316 39033536 -109749936 - L1MC4a LINE L1 -2190 5618 5414 757 266 27 0 chr11 39033594 39033778 -109749694 - MER91B DNA MER1_type -1 189 1 1490 161 38 51 chr11 39034374 39034690 -109748782 + AluJo SINE Alu 1 312 0 629 86 7 139 chr11 39034844 39034995 -109748477 + L1MB4 LINE L1 6040 6170 -10 50 0 0 0 chr11 39034995 39035045 -109748427 + AT_rich Low_complexity Low_complexity 1 50 0 431 290 41 73 chr11 39035069 39035314 -109748158 - MIR SINE MIR -3 259 23 364 251 49 53 chr11 39035765 39035898 -109747574 + MIR SINE MIR 42 171 -66 530 118 0 0 chr11 39035933 39036009 -109747463 - L2 LINE L2 -14 3299 3224 523 289 28 33 chr11 39036507 39036687 -109746785 + MIR SINE MIR 4 182 -80 1889 115 18 4 chr11 39036716 39037024 -109746448 + AluSx SINE Alu 1 312 0 451 246 197 11 chr11 39037082 39037265 -109746207 - MIR SINE MIR -44 218 2 2391 186 24 14 chr11 39037436 39037936 -109745536 - L1MB7 LINE L1 0 6184 5680 248 254 0 0 chr11 39038510 39038565 -109744907 - MIR SINE MIR -50 212 158 230 204 0 37 chr11 39038569 39038623 -109744849 + L1MB8 LINE L1 6044 6095 -83 341 211 0 14 chr11 39038624 39038695 -109744777 - MIR SINE MIR -116 146 77 202 339 0 0 chr11 39038777 39038833 -109744639 + L2 LINE L2 3258 3313 0 898 296 4 8 chr11 39039312 39039562 -109743910 + MIR SINE MIR 2 250 -12 249 139 0 0 chr11 39042218 39042261 -109741211 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 26 74 0 0 chr11 39042593 39042647 -109740825 + AT_rich Low_complexity Low_complexity 1 54 0 2125 61 0 61 chr11 39043852 39044148 -109739324 - AluY SINE Alu -12 299 22 401 241 25 96 chr11 39044394 39044593 -109738879 - MLT1K LTR MaLR -3 585 401 755 232 33 50 chr11 39045571 39045812 -109737660 - MLT1J1 LTR MaLR -185 261 25 273 29 0 0 chr11 39046031 39046065 -109737407 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1619 179 0 0 chr11 39046065 39046345 -109737127 - AluJb SINE Alu -32 280 1 326 275 25 17 chr11 39046482 39046602 -109736870 + L2 LINE L2 2853 2973 -341 498 296 71 30 chr11 39047300 39047567 -109735905 - MLT2E LTR ERVL 0 628 351 374 270 113 0 chr11 39047614 39047729 -109735743 + LTR67 LTR ERVL 430 557 0 316 315 70 28 chr11 39047753 39047896 -109735576 + MIR3 SINE MIR 19 167 -41 2266 110 131 11 chr11 39048135 39048517 -109734955 + MSTA LTR MaLR 1 428 0 325 329 99 24 chr11 39048623 39048692 -109734780 - MIR SINE MIR 0 262 200 857 205 83 5 chr11 39048692 39048897 -109734575 + MER58A DNA MER1_type 1 221 -3 325 329 99 24 chr11 39048897 39049040 -109734432 - MIR SINE MIR -62 200 34 1471 151 59 46 chr11 39049737 39050041 -109733431 - AluJo SINE Alu 0 312 5 189 243 0 0 chr11 39050433 39050470 -109733002 + MIR SINE MIR 108 144 -118 917 225 29 32 chr11 39051061 39051318 -109732154 - MIR SINE MIR -6 256 2 325 263 20 50 chr11 39052123 39052222 -109731250 + MIR SINE MIR 16 111 -97 260 307 111 26 chr11 39052393 39052546 -109730926 - L2 LINE L2 -2 3270 3105 1028 276 122 35 chr11 39052590 39053051 -109730421 - MLT1J LTR MaLR -8 503 3 1257 274 125 22 chr11 39053228 39053691 -109729781 - LTR33A LTR ERVL -11 512 2 2287 193 88 4 chr11 39053879 39054345 -109729127 - MLT1D LTR MaLR 0 505 1 392 270 52 65 chr11 39054769 39054999 -109728473 - MLT1J LTR MaLR -175 336 110 387 272 10 10 chr11 39055360 39055463 -109728009 - MIR SINE MIR -86 176 74 1629 76 0 14 chr11 39055664 39055938 -109727534 + AluY SINE Alu 63 333 0 786 189 16 70 chr11 39056131 39056316 -109727156 - L2 LINE L2 -2 3311 3137 313 252 86 65 chr11 39057010 39057149 -109726323 - HAL1b LINE L1 -1198 150 9 1591 168 50 99 chr11 39057589 39057838 -109725634 - MLT1B LTR MaLR 0 390 167 1408 186 62 7 chr11 39057838 39058129 -109725343 - AluJo SINE Alu -5 307 1 1591 168 50 99 chr11 39058129 39058283 -109725189 - MLT1B LTR MaLR -223 167 7 744 241 54 35 chr11 39058991 39059194 -109724278 + MER63A DNA MER1_type 1 207 -3 281 281 0 0 chr11 39059922 39059979 -109723493 + L2 LINE L2 3162 3218 -54 1263 237 147 41 chr11 39060233 39060723 -109722749 + MLT1F LTR MaLR 1 542 0 294 212 61 98 chr11 39061900 39062032 -109721440 + MIR3 SINE MIR 14 140 -68 1202 117 0 11 chr11 39062083 39062262 -109721210 - MER96B DNA MER1_type? 0 417 241 656 323 11 35 chr11 39062404 39062664 -109720808 + MIR SINE MIR 1 254 -8 786 154 160 13 chr11 39063343 39063499 -109719973 - MER5A DNA MER1_type -4 185 7 766 252 81 40 chr11 39063503 39063725 -109719747 + MIR SINE MIR 31 261 -1 304 329 206 7 chr11 39063975 39064130 -109719342 - MIR SINE MIR -65 197 12 188 306 69 0 chr11 39064226 39064298 -109719174 - L2 LINE L2 -93 3220 3144 424 235 295 31 chr11 39064316 39064663 -109718809 + MLT1J1 LTR MaLR 1 403 -6 233 311 122 0 chr11 39064748 39064822 -109718650 + MER5B DNA MER1_type 65 147 -31 199 245 0 0 chr11 39064970 39065019 -109718453 + MIR SINE MIR 144 192 -70 355 83 0 0 chr11 39065025 39065073 -109718399 - MLT1F LTR MaLR 0 542 495 2947 120 23 10 chr11 39065074 39065667 -109717805 - MER4E LTR ERV1 0 766 1 1411 237 189 2 chr11 39065667 39066079 -109717393 - MLT1F LTR MaLR -45 497 9 872 263 46 5 chr11 39066550 39066767 -109716705 + MIR SINE MIR 7 232 -30 628 308 201 9 chr11 39067495 39068082 -109715390 - L2 LINE L2 -51 3262 2548 212 210 0 16 chr11 39068929 39068991 -109714481 + GA-rich Low_complexity Low_complexity 4 64 0 230 321 71 0 chr11 39069435 39069519 -109713953 - L2 LINE L2 -14 3258 3169 240 233 27 14 chr11 39069653 39069726 -109713746 + L2 LINE L2 2986 3059 -213 365 326 14 21 chr11 39070001 39070142 -109713330 - MER5B DNA MER1_type -2 176 37 864 232 52 34 chr11 39070147 39070380 -109713092 + L1MC4a LINE L1 5684 5920 -1888 371 224 0 0 chr11 39070394 39070461 -109713011 - MER58 DNA MER1_type -10 2410 2344 266 252 84 9 chr11 39071071 39071178 -109712294 + MIR SINE MIR 77 191 -71 1420 154 94 50 chr11 39071580 39071928 -109711544 + AluJo SINE Alu 1 361 0 214 294 71 12 chr11 39072233 39072318 -109711154 - L2 LINE L2 -14 3258 3169 190 104 21 21 chr11 39072512 39072560 -109710912 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 378 314 68 71 chr11 39072864 39073217 -109710255 - L2 LINE L2 -3 3310 2959 434 289 69 35 chr11 39073468 39073728 -109709744 - MER102a DNA MER1_type -29 301 33 279 0 0 0 chr11 39073826 39073857 -109709615 + (TG)n Simple_repeat Simple_repeat 2 32 0 839 186 50 0 chr11 39074314 39074475 -109708997 + FRAM SINE Alu 5 173 -3 180 341 11 11 chr11 39074580 39074671 -109708801 - L3 LINE CR1 -119 1458 1368 282 224 9 121 chr11 39074737 39074853 -109708619 - L2 LINE L2 -19 3294 3192 276 77 0 0 chr11 39074892 39074931 -109708541 + (TTCC)n Simple_repeat Simple_repeat 2 40 0 21 82 0 0 chr11 39075044 39075093 -109708379 + AT_rich Low_complexity Low_complexity 1 49 0 1309 208 36 15 chr11 39075571 39076016 -109707456 - MER41-int LTR ERV1 -1913 3023 2470 336 263 44 29 chr11 39076036 39076173 -109707299 - MER41-int LTR ERV1 -2158 3788 3650 293 135 96 0 chr11 39076288 39076340 -109707132 - MLT2B1 LTR ERVL 0 520 464 497 238 98 14 chr11 39076377 39076520 -109706952 + MIR SINE MIR 73 227 -35 3176 60 44 14 chr11 39077114 39077546 -109705926 - L1PA6 LINE L1 -2 6152 5708 527 271 0 7 chr11 39077598 39077742 -109705730 - L1ME LINE L1 -470 5651 5509 321 242 25 56 chr11 39077776 39077937 -109705535 + L1ME4a LINE L1 5966 6121 0 247 298 223 0 chr11 39078243 39078364 -109705108 - MIR SINE MIR -50 212 65 492 221 74 20 chr11 39078407 39078556 -109704916 - MLT1L LTR MaLR -61 554 398 351 239 32 39 chr11 39078680 39078835 -109704637 + L1ME4a LINE L1 5966 6119 -2 424 252 111 107 chr11 39078869 39079167 -109704305 - MLT1L LTR MaLR -289 326 28 296 248 95 51 chr11 39079653 39079790 -109703682 + MLT1I LTR MaLR 1 143 -266 1087 167 17 70 chr11 39080583 39080870 -109702602 + L1MB8 LINE L1 5902 6173 -5 501 236 9 0 chr11 39081022 39081132 -109702340 - MER81 DNA DNA -2 112 2 337 252 143 25 chr11 39081266 39081385 -109702087 - MIR SINE MIR -102 160 28 595 241 50 0 chr11 39081542 39081683 -109701789 + MIR SINE MIR 4 151 -111 259 191 29 0 chr11 39081698 39081766 -109701706 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 255 250 11 23 chr11 39081769 39081857 -109701615 + MIR SINE MIR 164 250 -12 333 234 43 11 chr11 39082201 39082295 -109701177 - MIR SINE MIR -119 143 47 1807 206 58 104 chr11 39082330 39082898 -109700574 - MLT1F LTR MaLR 0 542 1 279 356 0 10 chr11 39084425 39084529 -109698943 + MIR SINE MIR 19 121 -87 2218 89 0 0 chr11 39084931 39085213 -109698259 - AluSg1 SINE Alu -27 282 1 339 244 44 75 chr11 39085459 39085619 -109697853 + L2 LINE L2 3159 3313 0 224 259 0 35 chr11 39085625 39085683 -109697789 - MIR SINE MIR -133 75 20 985 237 127 32 chr11 39085773 39086089 -109697383 - L1ME3A LINE L1 -19 6151 5806 228 299 5 43 chr11 39086306 39086490 -109696982 + (CACCC)n Simple_repeat Simple_repeat 3 179 0 719 263 0 3 chr11 39086776 39087081 -109696391 + (TGG)n Simple_repeat Simple_repeat 1 304 0 249 182 0 0 chr11 39087363 39087418 -109696054 + (CCA)n Simple_repeat Simple_repeat 3 57 0 1256 274 46 29 chr11 39087835 39088129 -109695343 - LTR16C LTR ERVL -2 489 187 2306 109 3 0 chr11 39088129 39088432 -109695040 + AluSc SINE Alu 1 304 -5 1256 274 46 29 chr11 39088432 39088484 -109694988 - LTR16C LTR ERVL -304 187 137 384 237 0 63 chr11 39089241 39089372 -109694100 + L1MC4a LINE L1 5706 5826 -297 488 276 102 31 chr11 39089977 39090202 -109693270 + MIR SINE MIR 15 255 -7 675 245 40 20 chr11 39091299 39091499 -109691973 + MIR SINE MIR 2 205 -57 493 306 58 0 chr11 39092215 39092388 -109691084 + MIR SINE MIR 53 235 -27 396 301 80 0 chr11 39092545 39092708 -109690764 + MIR SINE MIR 87 262 0 856 198 104 0 chr11 39093505 39093707 -109689765 - MER58A DNA MER1_type 0 224 2 3477 150 22 81 chr11 39093711 39094443 -109689029 - LTR8 LTR ERV1 -2 689 1 433 224 127 18 chr11 39094666 39094831 -109688641 + MIR SINE MIR 25 214 -48 340 205 41 98 chr11 39095139 39095168 -109688304 - MIR SINE MIR -77 185 156 4199 141 14 34 chr11 39095168 39095202 -109688270 - L1MB8 LINE L1 -5 6173 6140 1670 204 65 0 chr11 39095202 39095540 -109687932 - MLT1A1 LTR MaLR -3 362 3 4199 141 14 34 chr11 39095540 39096290 -109687182 - L1MB8 LINE L1 -38 6140 5405 340 205 41 98 chr11 39096290 39096382 -109687090 - MIR SINE MIR -106 156 71 378 269 52 21 chr11 39096478 39096637 -109686835 + L1MC4a LINE L1 5778 5947 -174 223 246 102 68 chr11 39096668 39096786 -109686686 + L2 LINE L2 3187 3308 -5 316 365 6 33 chr11 39097806 39097987 -109685485 + L2 LINE L2 2507 2682 -632 648 301 31 13 chr11 39098006 39098232 -109685240 + MIR SINE MIR 2 231 -31 2062 121 0 13 chr11 39098263 39098576 -109684896 - AluSx SINE Alu -3 309 1 188 329 149 19 chr11 39098638 39098799 -109684673 + L2 LINE L2 2794 2975 -339 360 236 67 106 chr11 39098965 39099295 -109684177 - L1MC5 LINE L1 -36 7925 7609 195 42 0 0 chr11 39100231 39100255 -109683217 + (CAGCC)n Simple_repeat Simple_repeat 1 24 0 2388 148 59 12 chr11 39100547 39100952 -109682520 + MSTB LTR MaLR 1 424 -2 213 39 0 0 chr11 39101178 39101204 -109682268 + (TTG)n Simple_repeat Simple_repeat 2 27 0 225 287 127 40 chr11 39101328 39101478 -109681994 + MIR SINE MIR 46 208 -54 2160 149 5 68 chr11 39102005 39102364 -109681108 + MLT1B LTR MaLR 1 332 -58 3540 130 21 4 chr11 39102364 39102880 -109680592 + MER1A DNA MER1_type 3 527 0 2160 149 5 68 chr11 39102880 39102935 -109680537 + MLT1B LTR MaLR 332 389 -1 573 246 152 6 chr11 39103901 39104072 -109679400 + MIR SINE MIR 48 243 -19 227 280 0 0 chr11 39104176 39104226 -109679246 + MIR SINE MIR 9 58 -204 581 242 129 0 chr11 39105489 39105667 -109677805 + MIR SINE MIR 47 247 -15 469 324 12 6 chr11 39105905 39106078 -109677394 - Charlie8 DNA MER1_type -2152 265 92 2229 149 6 6 chr11 39106225 39106588 -109676884 + MLT1A1 LTR MaLR 2 364 -1 386 118 0 106 chr11 39106934 39107033 -109676439 + L1M4 LINE L1 5417 5500 -678 2297 149 27 89 chr11 39107052 39107120 -109676352 + L1MB8 LINE L1 5422 5493 -685 1488 164 0 92 chr11 39107120 39107424 -109676048 + AluJo SINE Alu 1 276 -36 2297 149 27 89 chr11 39107424 39107880 -109675592 + L1MB8 LINE L1 5493 5913 -265 581 205 27 68 chr11 39107911 39108139 -109675333 + L1MB8 LINE L1 5891 6107 -71 610 256 55 73 chr11 39109122 39109302 -109674170 + MLT1K LTR MaLR 311 486 -102 938 244 23 14 chr11 39109302 39109523 -109673949 - MER58A DNA MER1_type 0 224 2 610 256 55 73 chr11 39109523 39109615 -109673857 + MLT1K LTR MaLR 486 578 -10 268 294 46 0 chr11 39109992 39110101 -109673371 + MIR3 SINE MIR 45 158 -50 1403 85 0 0 chr11 39110106 39110282 -109673190 - AluSg/x SINE Alu -8 304 129 248 258 119 50 chr11 39110414 39110573 -109672899 + MIR SINE MIR 72 241 -21 * 590 327 18 0 chr11 39110555 39110772 -109672700 + MIR SINE MIR 15 235 -27 22 0 0 0 chr11 39110961 39110983 -109672489 + AT_rich Low_complexity Low_complexity 1 22 0 262 315 94 38 chr11 39111068 39111335 -109672137 - MLT1L LTR MaLR -125 490 209 2203 143 29 18 chr11 39111556 39111942 -109671530 - MLT1B LTR MaLR 0 390 1 1165 216 204 45 chr11 39112599 39113001 -109670471 + MLT1C LTR MaLR 1 466 -1 260 287 11 11 chr11 39113455 39113549 -109669923 + MLT1K LTR MaLR 492 585 -3 800 213 19 19 chr11 39113597 39113757 -109669715 + FRAM SINE Alu 1 152 -24 2082 254 65 11 chr11 39113761 39114403 -109669069 + L1ME3 LINE L1 5467 6143 -19 250 26 0 0 chr11 39114416 39114454 -109669018 + L1MA3 LINE L1 6268 6305 0 266 252 61 8 chr11 39114578 39114709 -109668763 - L1ME4a LINE L1 -16 6105 5968 6280 63 1 3 chr11 39114840 39115620 -109667852 - LTR17 LTR ERV1 0 780 2 245 270 79 33 chr11 39115650 39115802 -109667670 - L1ME4a LINE L1 -340 5781 5623 260 306 12 0 chr11 39115848 39115933 -109667539 - L1ME4a LINE L1 -510 5611 5526 606 254 76 80 chr11 39115948 39116166 -109667306 - L1MC5 LINE L1 -36 7925 7708 315 0 0 0 chr11 39116166 39116201 -109667271 + (CA)n Simple_repeat Simple_repeat 2 36 0 606 254 76 80 chr11 39116201 39116545 -109666927 - L1MC5 LINE L1 -253 7708 7365 186 43 0 0 chr11 39116545 39116568 -109666904 + (CCCCCA)n Simple_repeat Simple_repeat 6 28 0 4918 139 43 31 chr11 39117045 39117938 -109665534 + MER4D LTR ERV1 1 903 0 2368 139 71 3 chr11 39118140 39118524 -109664948 + MSTA LTR MaLR 1 346 -18 1042 211 67 96 chr11 39118741 39119262 -109664210 - MER31-int LTR ERV1 -125 6206 4411 333 189 123 38 chr11 39119293 39119399 -109664073 - LTR37A LTR ERV1 -311 115 1 5318 183 21 70 chr11 39119400 39120666 -109662806 - MER31-int LTR ERV1 -687 4249 3048 2062 145 3 0 chr11 39120666 39120969 -109662503 - AluSq SINE Alu -9 304 1 5318 183 21 70 chr11 39120969 39121026 -109662446 - MER31-int LTR ERV1 -1888 3048 2990 280 311 28 44 chr11 39121128 39121195 -109662277 + L2 LINE L2 2484 2551 -763 2643 145 22 0 chr11 39121195 39121610 -109661862 + MSTB LTR MaLR 1 424 -2 280 311 28 44 chr11 39121610 39121722 -109661750 + L2 LINE L2 2551 2660 -654 378 192 30 30 chr11 39121731 39121830 -109661642 - MLT1J LTR MaLR -9 502 404 2675 237 34 16 chr11 39121840 39122524 -109660948 + L1ME1 LINE L1 5451 6146 -20 999 185 158 65 chr11 39122568 39122936 -109660536 - MLT1J LTR MaLR -108 403 2 269 309 33 46 chr11 39122953 39123105 -109660367 + L2 LINE L2 2698 2847 -467 246 295 135 48 chr11 39123280 39123487 -109659985 + L2 LINE L2 3089 3313 0 1745 153 80 0 chr11 39123733 39124008 -109659464 - AluJb SINE Alu -15 297 1 356 143 162 19 chr11 39124768 39124873 -109658599 + MER113 DNA MER1_type? 24 143 -378 1922 140 14 10 chr11 39124881 39125173 -109658299 - AluJb SINE Alu -19 293 1 198 0 0 0 chr11 39125173 39125195 -109658277 + (T)n Simple_repeat Simple_repeat 1 22 0 297 234 85 32 chr11 39125221 39125315 -109658157 + L2 LINE L2 3173 3271 -1 230 326 12 12 chr11 39125550 39125636 -109657836 + L2 LINE L2 3187 3272 0 208 229 60 72 chr11 39125636 39125719 -109657753 - MIR SINE MIR -78 184 103 1348 215 56 53 chr11 39125820 39126160 -109657312 + MLT1A1 LTR MaLR 23 363 -2 562 277 168 12 chr11 39126444 39126828 -109656644 - MLT1J LTR MaLR -3 508 1 595 92 0 0 chr11 39127381 39127457 -109656015 - AluSg/x SINE Alu -23 286 211 2500 105 6 25 chr11 39127457 39127819 -109655653 + THE1A LTR MaLR 1 355 0 1590 133 0 0 chr11 39127819 39128037 -109655435 - AluSq SINE Alu -95 218 1 845 234 84 0 chr11 39128147 39128374 -109655098 - MIR SINE MIR -10 252 7 570 274 107 28 chr11 39128752 39129004 -109654468 + Charlie8 DNA MER1_type 1 272 -2145 372 254 249 11 chr11 39129106 39129291 -109654181 - MIR SINE MIR -28 234 6 185 277 0 84 chr11 39130274 39130357 -109653115 + MIR SINE MIR 123 198 -64 329 349 121 6 chr11 39132352 39132518 -109650954 - MIR SINE MIR -58 204 20 701 90 120 0 chr11 39132579 39132746 -109650726 + AluSx SINE Alu 5 191 -121 308 195 126 69 chr11 39133204 39133363 -109650109 - L1MD1 LINE L1 -299 5943 5776 679 206 30 12 chr11 39133460 39133625 -109649847 - AluSx SINE Alu -23 286 119 240 86 0 0 chr11 39133627 39133662 -109649810 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 966 127 0 8 chr11 39133664 39133798 -109649674 - AluSx SINE Alu -179 133 1 8422 207 49 31 chr11 39133799 39135922 -109647550 - L1MDa LINE L1 -1770 4770 2687 1796 163 0 3 chr11 39135922 39136243 -109647229 - AluJb SINE Alu 0 320 1 8422 207 49 31 chr11 39136243 39136803 -109646669 - L1MDa LINE L1 -3853 2687 2139 2404 207 32 43 chr11 39136803 39137363 -109646109 + MLT2B3 LTR ERVL 1 554 0 8422 207 49 31 chr11 39137363 39139110 -109644362 - L1MDa LINE L1 -4401 2139 17 1994 162 0 0 chr11 39139946 39140242 -109643230 - AluJb SINE Alu -16 296 1 606 252 197 17 chr11 39140355 39140645 -109642827 - LTR16C LTR ERVL -53 438 97 267 247 107 81 chr11 39141636 39142057 -109641415 - L1ME4a LINE L1 0 6121 5690 290 340 89 25 chr11 39142078 39142360 -109641112 - L1ME4a LINE L1 -2182 5626 5327 945 224 67 55 chr11 39144143 39144322 -109639150 - Charlie7 DNA MER1_type -1927 685 509 2253 102 0 0 chr11 39144322 39144616 -109638856 + AluSc SINE Alu 2 295 -14 945 224 67 55 chr11 39144616 39144797 -109638675 - Charlie7 DNA MER1_type -2103 509 321 278 187 178 28 chr11 39144829 39144936 -109638536 - Charlie7 DNA MER1_type -2445 167 45 2249 79 45 0 chr11 39146294 39146584 -109636888 + AluY SINE Alu 1 303 -8 404 283 42 42 chr11 39146834 39147025 -109636447 + MIR SINE MIR 16 206 -56 230 223 149 50 chr11 39148088 39148209 -109635263 + MLT1K LTR MaLR 141 273 -315 493 267 33 7 chr11 39148407 39148557 -109634915 - MER74B LTR ERVL 0 622 469 1708 209 44 86 chr11 39149425 39149896 -109633576 - MER74A LTR ERVL -13 545 101 243 0 0 0 chr11 39149896 39149923 -109633549 + (TC)n Simple_repeat Simple_repeat 2 28 0 1708 209 44 86 chr11 39149923 39150020 -109633452 - MER74A LTR ERVL -457 101 1 897 227 132 53 chr11 39150020 39150377 -109633095 - MLT1I LTR MaLR -20 389 5 1773 185 13 0 chr11 39150452 39150750 -109632722 + AluJb SINE Alu 1 302 -10 32 26 0 0 chr11 39151390 39151429 -109632043 + AT_rich Low_complexity Low_complexity 1 39 0 740 277 107 36 chr11 39152186 39152597 -109630875 - MLT1J LTR MaLR -8 503 64 236 330 55 11 chr11 39152822 39152913 -109630559 + L2 LINE L2 3161 3255 -17 227 239 91 11 chr11 39153413 39153501 -109629971 + L2 LINE L2 2924 3018 -254 202 237 34 0 chr11 39154987 39155046 -109628426 + L2 LINE L2 3209 3269 -3 222 279 29 10 chr11 39155711 39155815 -109627657 + L2 LINE L2 2565 2670 -644 436 254 88 77 chr11 39155830 39156090 -109627382 + L2 LINE L2 2346 2608 -706 234 222 0 0 chr11 39156340 39156394 -109627078 + CT-rich Low_complexity Low_complexity 2 55 0 1909 93 54 0 chr11 39156394 39156652 -109626820 - AluSg SINE Alu -38 272 1 215 300 112 29 chr11 39156667 39156837 -109626635 - L2 LINE L2 -148 3165 2982 632 277 15 5 chr11 39156959 39157161 -109626311 - MIR SINE MIR -46 216 13 2144 118 3 3 chr11 39157213 39157509 -109625963 + AluSx SINE Alu 2 297 -15 186 103 0 0 chr11 39158774 39158803 -109624669 + (GGGA)n Simple_repeat Simple_repeat 1 29 0 323 287 11 0 chr11 39159235 39159329 -109624143 - L1ME LINE L1 -424 5697 5603 714 134 22 30 chr11 39160823 39160957 -109622515 - AluJo SINE Alu -178 134 2 2191 94 7 3 chr11 39160987 39161286 -109622186 + AluY SINE Alu 1 300 -11 377 325 47 0 chr11 39161287 39161499 -109621973 + L1MC4a LINE L1 5690 5911 -1897 1203 207 5 0 chr11 39161804 39162012 -109621460 - MER58A DNA MER1_type -9 215 7 609 320 88 12 chr11 39162316 39162647 -109620825 + L3 LINE CR1 912 1267 -310 486 287 5 69 chr11 39162869 39163057 -109620415 + MIR SINE MIR 77 252 -10 220 317 50 37 chr11 39163706 39163867 -109619605 - MIR SINE MIR -26 236 74 2117 120 17 0 chr11 39163984 39164284 -109619188 + AluSx SINE Alu 1 305 -7 206 296 14 14 chr11 39165034 39165105 -109618367 - L2 LINE L2 -665 2649 2579 480 169 9 5 chr11 39165111 39165333 -109618139 + (TG)n Simple_repeat Simple_repeat 1 223 0 557 261 169 0 chr11 39166434 39166641 -109616831 - MIR SINE MIR 0 262 21 2207 108 0 41 chr11 39166653 39166967 -109616505 - AluSx SINE Alu -11 301 1 2076 145 7 0 chr11 39167020 39167316 -109616156 - AluJb SINE Alu -14 298 1 205 268 62 27 chr11 39167424 39167536 -109615936 - L2 LINE L2 -1387 1927 1812 10588 130 25 2 chr11 39167556 39169183 -109614289 + Tigger1 DNA MER2_type 1 1663 -755 3731 116 32 28 chr11 39169174 39169776 -109613696 + Tigger1 DNA MER2_type 1815 2418 0 * 531 218 21 42 chr11 39170172 39170314 -109613158 + MIR3 SINE MIR 39 177 -31 32 43 0 0 chr11 39170550 39170596 -109612876 + AT_rich Low_complexity Low_complexity 1 46 0 1907 133 30 0 chr11 39170867 39171138 -109612334 + AluSx SINE Alu 1 279 -33 489 47 0 0 chr11 39171138 39171202 -109612270 + (CA)n Simple_repeat Simple_repeat 1 64 0 182 225 50 0 chr11 39171469 39171509 -109611963 - L2 LINE L2 -8 3305 3264 635 216 108 0 chr11 39172042 39172181 -109611291 + MER45A DNA AcHobo 24 177 -1 2160 188 17 23 chr11 39172186 39172664 -109610808 + Charlie1b DNA MER1_type 41 515 -8 204 283 211 26 chr11 39172922 39173074 -109610398 + L3 LINE CR1 1382 1561 -16 229 229 33 0 chr11 39173738 39173799 -109609673 + CT-rich Low_complexity Low_complexity 1 63 0 955 187 57 57 chr11 39175129 39175359 -109608113 + MIR SINE MIR 12 241 -21 763 274 91 25 chr11 39175463 39175704 -109607768 + MIR SINE MIR 3 259 -3 265 318 45 11 chr11 39175879 39175967 -109607505 + MIR SINE MIR 36 126 -136 207 349 0 24 chr11 39176001 39176084 -109607388 - L2 LINE L2 -1 3312 3232 279 271 31 21 chr11 39176097 39176193 -109607279 + MIR SINE MIR 160 256 -6 621 285 33 24 chr11 39177198 39177423 -109606049 + MIR SINE MIR 5 235 -27 210 175 25 0 chr11 39177513 39177553 -109605919 + GA-rich Low_complexity Low_complexity 1 41 0 253 226 16 32 chr11 39177971 39178033 -109605439 + C-rich Low_complexity Low_complexity 1 61 0 291 253 0 69 chr11 39178478 39178565 -109604907 - MIR SINE MIR -26 236 156 309 100 0 0 chr11 39178839 39178889 -109604583 + (TC)n Simple_repeat Simple_repeat 1 50 0 2584 285 95 19 chr11 39178908 39179579 -109603893 - L2 LINE L2 -2215 1099 329 2099 170 92 22 chr11 39179579 39180068 -109603404 + Charlie1b DNA MER1_type 1 523 0 2584 285 95 19 chr11 39180068 39180374 -109603098 - L2 LINE L2 -2985 329 48 2048 102 3 7 chr11 39180686 39180995 -109602477 - AluSx SINE Alu 0 308 1 731 323 141 31 chr11 39181190 39181645 -109601827 + L2 LINE L2 2807 3311 -2 2203 93 0 6 chr11 39181698 39182010 -109601462 + AluSg SINE Alu 1 310 0 1991 136 3 0 chr11 39182882 39183191 -109600281 + AluSx SINE Alu 1 310 -2 545 76 13 0 chr11 39184411 39184490 -109598982 + (GGA)n Simple_repeat Simple_repeat 1 80 0 186 103 0 0 chr11 39184620 39184649 -109598823 + (GGGA)n Simple_repeat Simple_repeat 1 29 0 366 293 72 49 chr11 39186847 39187082 -109596390 - MIR SINE MIR -18 244 14 449 242 137 13 chr11 39187960 39188113 -109595359 - MIR SINE MIR -13 249 78 21 0 0 0 chr11 39189928 39189949 -109593523 + AT_rich Low_complexity Low_complexity 1 21 0 2201 75 0 7 chr11 39189998 39190292 -109593180 + AluSc SINE Alu 1 292 -17 543 296 52 12 chr11 39190374 39190546 -109592926 + MIR3 SINE MIR 20 198 -10 451 194 284 0 chr11 39190571 39190705 -109592767 - MER5A DNA MER1_type -2 187 16 1049 146 96 20 chr11 39190735 39190934 -109592538 - MER20 DNA MER1_type 0 219 6 307 355 65 0 chr11 39190946 39191084 -109592388 + MER5B DNA MER1_type 1 147 -31 470 298 40 45 chr11 39191141 39191339 -109592133 + MIR SINE MIR 56 252 -10 371 281 16 81 chr11 39191510 39191695 -109591777 + MER102b DNA MER1_type 6 178 -163 274 239 34 23 chr11 39191693 39191781 -109591691 + MER102b DNA MER1_type 251 339 -2 * 2007 93 0 0 chr11 39191806 39192076 -109591396 - AluSx SINE Alu -2 310 41 222 237 17 17 chr11 39192738 39192782 -109590690 + CT-rich Low_complexity Low_complexity 2 48 -12 1760 174 7 0 chr11 39192782 39193092 -109590380 - AluJo SINE Alu 0 312 1 222 237 17 17 chr11 39193092 39193106 -109590366 + CT-rich Low_complexity Low_complexity 47 60 0 1695 170 35 0 chr11 39194134 39194423 -109589049 + AluJo SINE Alu 1 299 -13 600 254 14 42 chr11 39194457 39194599 -109588873 - L2 LINE L2 -15 3298 3161 570 309 73 20 chr11 39194764 39195010 -109588462 + MIR SINE MIR 4 262 0 1928 70 4 0 chr11 39195303 39195547 -109587925 + L1PA5 LINE L1 5907 6151 -3 314 254 33 41 chr11 39195741 39195863 -109587609 - MIR3 SINE MIR -20 188 68 751 237 53 68 chr11 39195958 39196224 -109587248 + MER102a DNA MER1_type 43 304 -26 203 313 138 0 chr11 39196401 39196481 -109586991 + MIR SINE MIR 23 113 -95 734 307 132 19 chr11 39196645 39196810 -109586662 - L1MC4a LINE L1 -1779 6029 5884 2489 49 0 3 chr11 39196810 39197118 -109586354 - AluY SINE Alu -4 307 1 734 307 132 19 chr11 39197118 39197431 -109586041 - L1MC4a LINE L1 -1924 5884 5497 436 309 117 9 chr11 39197492 39197715 -109585757 - MIR SINE MIR 0 262 16 1909 87 11 4 chr11 39197734 39197999 -109585473 - AluSq SINE Alu -13 300 34 500 343 84 38 chr11 39198087 39198504 -109584968 - L2 LINE L2 0 3272 2837 447 296 41 35 chr11 39198559 39198731 -109584741 + MIR SINE MIR 9 181 -81 1061 101 4 0 chr11 39199632 39199863 -109583609 + (TA)n Simple_repeat Simple_repeat 1 232 0 3796 88 3 34 chr11 39199863 39200534 -109582938 - L1P5 LINE L1 -370 5781 5126 304 276 86 55 chr11 39200535 39200698 -109582774 - MIR3 SINE MIR -9 199 32 573 163 0 0 chr11 39201053 39201145 -109582327 - FRAM SINE Alu -11 165 74 642 158 0 219 chr11 39201147 39201375 -109582097 - MER20 DNA MER1_type -41 178 1 353 238 12 0 chr11 39201508 39201588 -109581884 - L2 LINE L2 0 3313 3233 2325 131 9 6 chr11 39201604 39201940 -109581532 - MER1B DNA MER1_type 0 337 1 466 254 136 40 chr11 39202128 39202305 -109581167 + MIR SINE MIR 26 219 -43 222 290 32 0 chr11 39202751 39202813 -109580659 + MIR SINE MIR 188 251 -11 10573 109 5 11 chr11 39202973 39204505 -109578967 - L1P LINE L1 -4323 1823 301 7113 118 16 7 chr11 39205362 39206247 -109577225 - L1MA3 LINE L1 0 6305 5430 1915 147 70 17 chr11 39206247 39206602 -109576870 - THE1C LTR MaLR -1 374 1 7113 118 16 7 chr11 39206602 39207511 -109575961 - L1MA3 LINE L1 -875 5430 4493 1165 183 16 75 chr11 39207511 39207763 -109575709 + MLT1B LTR MaLR 154 390 0 245 296 57 11 chr11 39207796 39207884 -109575588 - MIR SINE MIR -4 258 167 334 262 134 55 chr11 39207970 39208116 -109575356 - MIR SINE MIR -21 241 79 1157 230 154 29 chr11 39208116 39208563 -109574909 - MLT1D LTR MaLR -2 503 1 334 262 134 55 chr11 39208563 39208580 -109574892 - MIR SINE MIR -183 79 65 499 290 73 19 chr11 39208748 39209007 -109574465 + L1MC4a LINE L1 5610 5882 -1926 976 119 20 7 chr11 39209065 39209216 -109574256 - MER3 DNA MER1_type -56 153 1 21 26 0 26 chr11 39209383 39209402 -109574070 + AT_rich Low_complexity Low_complexity 1 19 -19 1635 182 0 26 chr11 39209402 39209704 -109573768 - AluJo SINE Alu -18 294 1 21 26 0 26 chr11 39209704 39209723 -109573749 + AT_rich Low_complexity Low_complexity 19 38 0 202 288 41 0 chr11 39209867 39209940 -109573532 + MIR SINE MIR 64 139 -69 665 235 62 17 chr11 39210263 39210442 -109573030 - MIR SINE MIR -6 256 70 337 210 30 15 chr11 39210610 39210723 -109572749 + MIR SINE MIR 1 116 -92 2130 118 7 0 chr11 39210732 39211038 -109572434 - AluSg SINE Alu -2 308 1 2033 117 40 3 chr11 39211118 39211418 -109572054 - AluSx SINE Alu -1 311 1 2101 86 7 0 chr11 39211457 39211748 -109571724 - AluSp SINE Alu 0 313 21 189 343 57 0 chr11 39211749 39211819 -109571653 - L2 LINE L2 -44 3228 3155 227 280 248 32 chr11 39213571 39213696 -109569776 - MIR SINE MIR -60 202 51 355 248 74 25 chr11 39213893 39214014 -109569458 + L2 LINE L2 3146 3272 0 290 313 70 31 chr11 39214029 39214157 -109569315 + L2 LINE L2 3139 3271 -1 1830 134 10 38 chr11 39215094 39215407 -109568065 - AluJo SINE Alu -8 304 1 2122 113 10 0 chr11 39215916 39216216 -109567256 - AluSx SINE Alu -9 303 1 193 341 12 24 chr11 39217315 39217400 -109566072 - L2 LINE L2 -2 3270 3187 346 218 146 9 chr11 39217444 39217554 -109565918 - L2 LINE L2 -11 3302 3178 2063 118 10 0 chr11 39217942 39218239 -109565233 - AluSg1 SINE Alu -9 300 1 324 197 53 0 chr11 39218495 39218571 -109564901 - MIR3 SINE MIR -29 179 100 237 286 0 0 chr11 39218819 39218882 -109564590 - Charlie8 DNA MER1_type 0 2417 2355 712 274 37 5 chr11 39218925 39219115 -109564357 - Charlie8 DNA MER1_type -2216 201 6 280 269 186 32 chr11 39219163 39219319 -109564153 - MIR SINE MIR -33 229 50 1607 184 49 38 chr11 39219342 39219689 -109563783 - MLT1A2 LTR MaLR -5 369 19 691 253 99 18 chr11 39220534 39220755 -109562717 + MIR SINE MIR 20 258 -4 377 129 40 59 chr11 39220879 39221083 -109562389 + AluJo SINE Alu 3 290 -12 269 227 91 0 chr11 39221184 39221250 -109562222 + L3b LINE CR1 1266 1337 -246 2012 106 3 26 chr11 39221666 39221969 -109561503 + AluSx SINE Alu 1 296 -16 841 238 52 19 chr11 39223365 39223575 -109559897 - MIR SINE MIR 0 262 46 339 310 102 0 chr11 39223898 39224095 -109559377 + MER102a DNA MER1_type 92 308 -22 348 258 117 8 chr11 39224171 39224299 -109559173 + MIR SINE MIR 111 252 -10 686 288 47 51 chr11 39225622 39225879 -109557593 - MIR SINE MIR -1 261 6 299 293 84 84 chr11 39225817 39226032 -109557440 + MIR SINE MIR 42 256 -6 * 218 91 68 0 chr11 39227351 39227395 -109556077 + T-rich Low_complexity Low_complexity 1 47 0 7715 20 4 0 chr11 39227395 39228903 -109554569 - L1PA3 LINE L1 -3 6152 4637 1877 151 0 0 chr11 39229136 39229427 -109554045 + AluSx SINE Alu 1 291 -21 26 0 0 0 chr11 39229430 39229456 -109554016 + AT_rich Low_complexity Low_complexity 1 26 0 413 250 68 56 chr11 39229609 39229861 -109553611 - L1MC4a LINE L1 -1853 5955 5701 350 308 19 10 chr11 39231808 39231912 -109551560 + L2 LINE L2 3168 3272 0 246 243 187 28 chr11 39232091 39232198 -109551274 + MIR SINE MIR 40 163 -99 2385 58 0 0 chr11 39232198 39232492 -109550980 + AluY SINE Alu 8 301 -10 1695 193 173 16 chr11 39233179 39233619 -109549853 - Charlie1b DNA MER1_type 0 523 15 610 233 81 35 chr11 39233790 39233990 -109549482 + MIR SINE MIR 7 211 -51 1041 219 66 8 chr11 39234012 39234254 -109549218 + MIR SINE MIR 2 257 -5 396 0 0 0 chr11 39234512 39234556 -109548916 + (CA)n Simple_repeat Simple_repeat 2 45 0 219 313 8 47 chr11 39235210 39235338 -109548134 + L2 LINE L2 3171 3293 -20 671 324 76 18 chr11 39235380 39235828 -109547644 - MER113 DNA MER1_type? -43 478 5 237 286 0 0 chr11 39236913 39236962 -109546510 + (TG)n Simple_repeat Simple_repeat 2 50 0 596 218 109 45 chr11 39237614 39238015 -109545457 + Tigger8 DNA MER2_type 131 573 -93 672 170 127 67 chr11 39238392 39238504 -109544968 + MER5A DNA MER1_type 5 132 -57 2184 98 0 3 chr11 39238504 39238799 -109544673 - AluSx SINE Alu -18 294 1 672 170 127 67 chr11 39238799 39238851 -109544621 + MER5A DNA MER1_type 132 179 -10 560 284 20 59 chr11 39238846 39239050 -109544422 - MIR SINE MIR -35 227 32 * 224 346 0 0 chr11 39239887 39239965 -109543507 + MIR SINE MIR 2 79 -183 396 302 87 13 chr11 39240034 39240183 -109543289 + MIR SINE MIR 88 247 -15 334 293 263 10 chr11 39240236 39240434 -109543038 + MIR SINE MIR 3 250 -12 291 180 0 0 chr11 39241382 39241432 -109542040 - MER45A DNA AcHobo 0 178 129 1525 287 94 15 chr11 39241552 39242071 -109541401 - MER45C DNA AcHobo -353 600 41 196 310 52 0 chr11 39242552 39242610 -109540862 + L3 LINE CR1 1514 1574 -3 383 328 41 8 chr11 39242983 39243105 -109540367 - L2 LINE L2 -4 3309 3184 1989 129 0 7 chr11 39243805 39244100 -109539372 + AluSx SINE Alu 1 293 -19 344 268 89 42 chr11 39244346 39244542 -109538930 - MIR SINE MIR -38 224 15 237 235 162 81 chr11 39244862 39244998 -109538474 + MIR SINE MIR 110 256 -6 24 32 0 0 chr11 39245123 39245154 -109538318 + AT_rich Low_complexity Low_complexity 1 31 0 323 23 23 0 chr11 39245831 39245875 -109537597 + (TTTTTG)n Simple_repeat Simple_repeat 2 46 0 260 319 160 6 chr11 39246212 39246381 -109537091 + MIR SINE MIR 39 233 -29 1898 162 48 31 chr11 39246766 39247180 -109536292 - L1MB2 LINE L1 -3 6168 5748 1987 106 24 3 chr11 39247228 39247520 -109535952 - AluSx SINE Alu -14 298 1 553 360 70 29 chr11 39248932 39249274 -109534198 - L2 LINE L2 -9 3263 2908 316 149 40 27 chr11 39250403 39250477 -109532995 + MIR SINE MIR 46 120 -142 216 313 172 45 chr11 39251620 39251754 -109531718 + MIR3 SINE MIR 9 159 -49 382 159 212 106 chr11 39252321 39252366 -109531106 + MER53 DNA DNA 2 41 -148 1497 171 19 0 chr11 39252366 39252624 -109530848 + AluJb SINE Alu 32 294 -18 382 159 212 106 chr11 39252624 39252748 -109530724 + MER53 DNA DNA 41 189 0 311 250 48 12 chr11 39252905 39252989 -109530483 - MER115 DNA AcHobo -483 210 124 631 287 48 68 chr11 39254281 39254328 -109529144 + MIR SINE MIR 8 54 -208 2183 161 32 72 chr11 39254328 39254770 -109528702 - MSTB LTR MaLR 0 426 3 9142 177 22 12 chr11 39254771 39256023 -109527449 - MSTB-int LTR MaLR 0 1651 378 2172 109 0 0 chr11 39256023 39256317 -109527155 - AluSg SINE Alu -16 294 1 9142 177 22 12 chr11 39256317 39256699 -109526773 - MSTB-int LTR MaLR -1273 378 1 2331 164 28 28 chr11 39256699 39257125 -109526347 - MSTB LTR MaLR 0 426 1 631 287 48 68 chr11 39257125 39257325 -109526147 + MIR SINE MIR 52 253 -9 382 257 0 14 chr11 39257578 39257684 -109525788 + L1P4 LINE L1 5507 5607 -533 388 241 64 35 chr11 39257813 39257954 -109525518 + L1MC4a LINE L1 5755 5899 -1909 217 318 178 9 chr11 39259017 39259124 -109524348 + MIR SINE MIR 20 144 -118 542 253 58 17 chr11 39259265 39259439 -109524033 + MIR SINE MIR 79 259 -3 192 77 0 0 chr11 39260257 39260283 -109523189 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 274 325 12 0 chr11 39260290 39260370 -109523102 - L2 LINE L2 -18 3254 3174 575 297 36 36 chr11 39260789 39261011 -109522461 - MIR SINE MIR -6 256 35 249 270 0 0 chr11 39262531 39262594 -109520878 + L2 LINE L2 2737 2799 -515 260 321 37 0 chr11 39262746 39262827 -109520645 + L2 LINE L2 3169 3252 -20 253 285 80 33 chr11 39263021 39263166 -109520306 - MIR SINE MIR -63 145 6 580 240 16 0 chr11 39263855 39263980 -109519492 + MER45A DNA AcHobo 46 172 -6 637 309 20 10 chr11 39264889 39265093 -109518379 + MIR SINE MIR 7 212 -50 21 0 0 0 chr11 39266296 39266317 -109517155 + AT_rich Low_complexity Low_complexity 1 21 0 354 262 196 0 chr11 39266322 39266429 -109517043 + L2 LINE L2 3176 3303 -10 3290 142 25 23 chr11 39267002 39267564 -109515908 - MER34B LTR ERV1 0 565 3 539 301 40 75 chr11 39267796 39268222 -109515250 - L2 LINE L2 -9 3263 2853 189 309 0 0 chr11 39270955 39270997 -109512475 + L2 LINE L2 3257 3298 -15 2348 90 0 0 chr11 39271550 39271861 -109511611 + AluY SINE Alu 1 311 0 224 263 40 40 chr11 39272556 39272632 -109510840 + MIR SINE MIR 113 188 -74 678 275 53 14 chr11 39273744 39273951 -109509521 + MIR SINE MIR 27 241 -21 460 276 45 68 chr11 39274190 39274454 -109509018 - L1ME4a LINE L1 -39 6082 5825 578 252 32 35 chr11 39275317 39275554 -109507918 + MIR SINE MIR 10 244 -18 2293 91 7 3 chr11 39275567 39275865 -109507607 + AluSq SINE Alu 1 299 -14 467 313 16 0 chr11 39280113 39280241 -109503231 - L2 LINE L2 -3 3310 3181 1989 176 90 38 chr11 39280417 39280893 -109502579 - MLT1D LTR MaLR -4 501 1 301 189 47 88 chr11 39282485 39282605 -109500867 - MIR SINE MIR -79 183 71 33 85 0 0 chr11 39282840 39282922 -109500550 + AT_rich Low_complexity Low_complexity 1 82 0 1150 197 144 3 chr11 39283367 39283932 -109499540 + LTR50 LTR ERVL 8 792 -3 396 335 94 38 chr11 39284639 39285033 -109498439 + L1ME LINE L1 2 417 -5653 604 193 138 0 chr11 39285384 39285565 -109497907 + L1ME LINE L1 2051 2256 -3824 1574 149 0 21 chr11 39285640 39285881 -109497591 - MER46A DNA MER2_type 0 236 1 771 263 34 65 chr11 39285887 39286149 -109497323 - MIR SINE MIR -6 256 3 252 0 0 0 chr11 39286302 39286330 -109497142 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 369 0 0 0 chr11 39286329 39286370 -109497102 + (CA)n Simple_repeat Simple_repeat 1 41 0 971 242 4 45 chr11 39287165 39287429 -109496043 - MIR SINE MIR 0 262 10 186 209 0 0 chr11 39287858 39287901 -109495571 + (CATATA)n Simple_repeat Simple_repeat 3 45 0 4842 223 54 27 chr11 39288025 39290171 -109493301 + L1MB8 LINE L1 3903 5990 -188 1894 147 70 3 chr11 39290171 39290512 -109492960 - L1MB3 LINE L1 0 6183 5820 3261 132 8 6 chr11 39290522 39291022 -109492450 - L1MB3 LINE L1 -4 6179 5679 4842 223 54 27 chr11 39291022 39291078 -109492394 + L1MB8 LINE L1 5998 6178 0 226 150 100 0 chr11 39291184 39291244 -109492228 + (TTAAG)n Simple_repeat Simple_repeat 3 68 0 428 176 158 12 chr11 39291326 39291491 -109491981 - HAL1b LINE L1 -222 1126 938 1632 196 62 62 chr11 39291952 39292417 -109491055 + LTR37B LTR ERV1 4 468 0 398 286 32 65 chr11 39292459 39292644 -109490828 - MER5A DNA MER1_type -5 184 6 319 222 0 25 chr11 39292877 39292958 -109490514 + MER116 DNA Mariner 2 80 0 243 84 141 99 chr11 39293455 39293526 -109489946 + LTR37A LTR ERV1 1 74 -352 1306 182 80 10 chr11 39293586 39293899 -109489573 + LTR37A LTR ERV1 92 426 0 232 241 126 11 chr11 39294540 39294627 -109488845 - MER112 DNA MER1_type -79 181 85 418 180 90 20 chr11 39294893 39294993 -109488479 - AluJo SINE Alu -176 136 30 7055 14 0 0 chr11 39295938 39296724 -109486748 - L1PA2 LINE L1 0 6155 5370 * 7311 26 6 0 chr11 39296720 39297574 -109485898 + L1PA2 LINE L1 4519 5377 -769 2298 90 0 37 chr11 39297789 39298111 -109485361 + AluY SINE Alu 1 310 -1 22 35 0 0 chr11 39298125 39298154 -109485318 + AT_rich Low_complexity Low_complexity 1 29 0 233 240 125 21 chr11 39299452 39299548 -109483924 + L1MC4 LINE L1 7922 8027 -15 271 306 61 0 chr11 39299678 39299776 -109483696 - L2 LINE L2 -24 3289 3186 2044 138 3 0 chr11 39300399 39300697 -109482775 - AluSx SINE Alu -13 299 1 2187 96 7 7 chr11 39301166 39301468 -109482004 + AluSx SINE Alu 2 303 -9 318 164 90 0 chr11 39301977 39302044 -109481428 - MIR3 SINE MIR -13 195 123 233 205 72 36 chr11 39302261 39302344 -109481128 - L1ME4a LINE L1 0 6121 6036 24 0 0 0 chr11 39305828 39305852 -109477620 + AT_rich Low_complexity Low_complexity 1 24 0 326 371 86 0 chr11 39306330 39306551 -109476921 + L2 LINE L2 2412 2651 -663 303 234 65 0 chr11 39307059 39307136 -109476336 + MER58B DNA MER1_type 216 297 -44 292 249 50 134 chr11 39307653 39307742 -109475730 - MIR3 SINE MIR -6 202 138 1006 232 72 0 chr11 39307742 39307949 -109475523 - MER58A DNA MER1_type 0 224 3 292 249 50 134 chr11 39307949 39308060 -109475412 - MIR3 SINE MIR -70 138 19 1873 161 3 30 chr11 39308437 39308741 -109474731 + AluJo SINE Alu 1 296 -16 29 28 0 0 chr11 39309168 39309204 -109474268 + AT_rich Low_complexity Low_complexity 1 36 0 2350 93 7 0 chr11 39309966 39310267 -109473205 + AluSp SINE Alu 1 303 -10 2519 72 0 7 chr11 39310651 39310956 -109472516 + AluSp SINE Alu 1 303 -10 2403 84 0 3 chr11 39312240 39312539 -109470933 - AluSg SINE Alu -12 298 1 236 232 179 11 chr11 39312708 39312803 -109470669 - L2 LINE L2 -3 3310 3200 580 70 0 0 chr11 39313893 39313964 -109469508 + Alu SINE Alu 222 292 -20 1008 262 119 36 chr11 39314363 39315095 -109468377 - L2 LINE L2 -1 3312 2518 184 323 108 15 chr11 39315398 39315463 -109468009 - MIR SINE MIR -119 89 19 23 0 0 0 chr11 39316092 39316115 -109467357 + AT_rich Low_complexity Low_complexity 1 23 0 217 250 26 53 chr11 39316464 39316540 -109466932 + MIR SINE MIR 68 141 -121 752 278 98 0 chr11 39317084 39317289 -109466183 + MIR SINE MIR 13 237 -25 485 300 47 43 chr11 39317238 39317471 -109466001 - MIR SINE MIR -17 245 12 * 1933 119 45 0 chr11 39317653 39317939 -109465533 - AluSx SINE Alu -13 299 1 15754 119 40 13 chr11 39318207 39320561 -109462911 - Tigger1 DNA MER2_type 0 2418 1 492 239 26 87 chr11 39320562 39320783 -109462689 - L1ME LINE L1 -449 5672 5466 313 300 0 11 chr11 39321424 39321514 -109461958 + L1MC4 LINE L1 6614 6702 -1340 737 173 22 0 chr11 39321534 39321767 -109461705 + (TA)n Simple_repeat Simple_repeat 1 238 0 324 244 11 33 chr11 39321771 39321861 -109461611 + L1MC4 LINE L1 6615 6702 -1340 632 200 23 0 chr11 39321881 39322056 -109461416 + (TA)n Simple_repeat Simple_repeat 2 180 0 1809 137 58 4 chr11 39322188 39322465 -109461007 - AluJb SINE Alu -20 292 1 24 32 0 0 chr11 39324693 39324724 -109458748 + GC_rich Low_complexity Low_complexity 1 31 0 830 222 36 63 chr11 39325277 39325491 -109457981 + MIR SINE MIR 8 215 -47 1906 174 0 7 chr11 39325491 39325801 -109457671 + AluJb SINE Alu 1 308 -4 830 222 36 63 chr11 39325801 39325838 -109457634 + MIR SINE MIR 215 252 -10 273 274 60 17 chr11 39326157 39326274 -109457198 + MIR SINE MIR 70 191 -71 311 319 18 0 chr11 39326438 39326551 -109456921 + MLT1J2 LTR MaLR 49 163 -287 346 301 39 8 chr11 39326595 39326775 -109456697 + MLT1I LTR MaLR 258 395 -14 507 125 0 0 chr11 39327074 39327154 -109456318 + MADE1 DNA Mariner 1 80 0 1949 194 12 30 chr11 39327227 39327628 -109455844 + MSTD LTR MaLR 3 396 0 1703 183 143 36 chr11 39327851 39327911 -109455561 + MLT1F LTR MaLR 46 98 -444 2342 113 33 33 chr11 39327911 39328275 -109455197 - THE1B LTR MaLR 0 364 1 1703 183 143 36 chr11 39328275 39328661 -109454811 + MLT1F LTR MaLR 98 540 -2 241 195 0 0 chr11 39328663 39328704 -109454768 - L2 LINE L2 -37 3276 3236 2981 122 4 9 chr11 39328704 39329162 -109454310 - MER1A DNA MER1_type 0 529 74 323 377 55 5 chr11 39329164 39329363 -109454109 - L2 LINE L2 -278 3035 2827 2316 43 0 4 chr11 39330629 39330943 -109452529 - AluY SINE Alu 0 313 1 459 235 83 8 chr11 39331055 39331187 -109452285 + LTR37B LTR ERV1 10 151 -317 7503 28 0 3 chr11 39332162 39333262 -109450210 - L1PA4 LINE L1 -3 6152 5057 403 293 94 9 chr11 39333829 39334041 -109449431 - L1ME LINE L1 -351 5770 5541 2110 102 3 35 chr11 39334586 39334899 -109448573 - AluSx SINE Alu -9 303 1 329 243 90 34 chr11 39335188 39335247 -109448225 - L1MC4 LINE L1 -146 7896 7842 2018 155 36 36 chr11 39335247 39335283 -109448189 + THE1B LTR MaLR 3 38 -326 2148 117 3 0 chr11 39335283 39335581 -109447891 - AluSp SINE Alu -14 299 1 2018 155 36 36 chr11 39335581 39335906 -109447566 + THE1B LTR MaLR 37 364 0 11970 90 2 1 chr11 39335906 39337484 -109445988 + THE1B-int LTR MaLR 1 1580 0 2284 123 22 25 chr11 39337484 39337849 -109445623 + THE1B LTR MaLR 1 364 0 329 243 90 34 chr11 39337849 39337964 -109445508 - L1MC4 LINE L1 -199 7843 7710 1738 199 133 77 chr11 39338068 39338812 -109444660 - L1MD1 LINE L1 -5 6631 5825 1576 200 0 13 chr11 39338812 39339112 -109444360 - AluJb SINE Alu -16 296 1 1738 199 133 77 chr11 39339112 39339286 -109444186 - L1MD1 LINE L1 -811 5825 5662 309 181 32 11 chr11 39339313 39339407 -109444065 + CT-rich Low_complexity Low_complexity 1 96 0 2182 228 44 37 chr11 39339424 39340266 -109443206 - L1MD1 LINE L1 -1194 5346 4499 421 254 100 0 chr11 39340296 39340426 -109443046 - L1MD1 LINE L1 -2275 4265 4123 * 8264 67 7 1 chr11 39340425 39342343 -109441129 - L1PA6 LINE L1 -20 6134 4203 * 11930 82 6 3 chr11 39342327 39344062 -109439410 + L1P LINE L1 2498 4237 -1909 4102 213 82 35 chr11 39344055 39346111 -109437361 - L1MD1 LINE L1 -2406 4134 1989 * 21 36 0 0 chr11 39346675 39346703 -109436769 + AT_rich Low_complexity Low_complexity 1 28 0 1168 218 103 39 chr11 39346847 39347282 -109436190 + MER44D DNA MER2_type 9 526 -79 2460 198 19 13 chr11 39347313 39347782 -109435690 + MER70A LTR ERVL 1 472 0 398 307 46 67 chr11 39347885 39348123 -109435349 - L1 LINE L1 -1938 4208 3976 27 0 0 0 chr11 39348151 39348178 -109435294 + AT_rich Low_complexity Low_complexity 1 27 0 28 48 0 0 chr11 39348412 39348454 -109435018 + AT_rich Low_complexity Low_complexity 1 42 0 232 200 67 78 chr11 39348580 39348670 -109434802 - L2 LINE L2 -66 3247 3159 618 164 52 8 chr11 39348699 39348833 -109434639 + MLT1I LTR MaLR 19 158 -251 937 156 45 22 chr11 39348870 39349049 -109434423 - MLT1H LTR MaLR -366 183 1 326 337 99 40 chr11 39349062 39349457 -109434015 - L1 LINE L1 -3044 3102 2685 1959 115 0 4 chr11 39349807 39350068 -109433404 + AluSx SINE Alu 26 285 -27 218 31 0 31 chr11 39350071 39350103 -109433369 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 657 251 122 55 chr11 39350534 39350937 -109432535 + L1ME3A LINE L1 5727 6156 -14 47 61 0 0 chr11 39350993 39351075 -109432397 + AT_rich Low_complexity Low_complexity 1 82 0 2512 51 0 0 chr11 39351083 39351378 -109432094 - AluY SINE Alu -16 295 1 1203 146 19 108 chr11 39351483 39351806 -109431666 + L1MA10 LINE L1 6030 6323 -11 343 301 39 86 chr11 39351898 39352260 -109431212 - HAL1 LINE L1 -1048 1459 1115 1435 192 63 42 chr11 39353884 39354264 -109429208 + MLT1B LTR MaLR 3 390 0 1977 154 24 0 chr11 39354329 39354627 -109428845 - AluSx SINE Alu -7 305 1 2264 173 17 42 chr11 39354936 39355242 -109428230 + MER65C LTR ERV1 1 292 -169 2406 77 0 6 chr11 39355242 39355555 -109427917 - AluY SINE Alu 0 311 1 2264 173 17 42 chr11 39355555 39355721 -109427751 + MER65C LTR ERV1 292 461 0 296 268 12 65 chr11 39356203 39356371 -109427101 - MER113 DNA MER1_type? -34 487 329 380 252 22 7 chr11 39357056 39357195 -109426277 - MER113 DNA MER1_type? -355 166 26 613 154 8 0 chr11 39358665 39358782 -109424690 - L1MC/D LINE L1 -532 5710 5593 475 221 31 0 chr11 39358801 39358928 -109424544 - L1MC3 LINE L1 -25 7760 7630 233 65 0 0 chr11 39358928 39358959 -109424513 - L1MDa LINE L1 -4534 2006 1976 642 250 167 23 chr11 39358965 39359265 -109424207 + MLT1D LTR MaLR 8 350 -155 569 278 90 48 chr11 39359378 39359530 -109423942 - L1MC4a LINE L1 -1834 5974 5830 1752 128 103 34 chr11 39359530 39359881 -109423591 + THE1C LTR MaLR 1 375 0 569 278 90 48 chr11 39359881 39360084 -109423388 - L1MC4a LINE L1 -1978 5830 5604 1488 196 84 25 chr11 39360084 39360442 -109423030 + MLT1B LTR MaLR 5 383 -7 281 297 0 0 chr11 39360447 39360521 -109422951 - L1MC4a LINE L1 -2201 5607 5534 8317 107 34 2 chr11 39360620 39361970 -109421502 - L1PA7 LINE L1 -3167 2979 1587 17224 81 14 2 chr11 39361972 39365126 -109418346 + L1PA7 LINE L1 2983 6154 0 663 318 47 33 chr11 39365536 39365964 -109417508 - MLT1K LTR MaLR 0 588 155 1733 139 24 0 chr11 39366327 39366615 -109416857 - MLT1B LTR MaLR 0 390 96 41062 29 22 1 chr11 39366619 39372643 -109410829 - L1HS LINE L1 -2 6153 2 601 100 55 36 chr11 39372643 39372753 -109410719 - MLT1B LTR MaLR -278 112 1 5607 207 42 21 chr11 39373021 39375235 -109408237 - L1 LINE L1 -3172 4036 1708 1561 251 27 68 chr11 39375359 39375992 -109407480 - L1 LINE L1 -6587 622 16 921 248 84 36 chr11 39376465 39376905 -109406567 + MLT2B1 LTR ERVL 13 520 0 587 234 184 45 chr11 39376928 39377172 -109406300 - L2 LINE L2 -345 2969 2692 452 291 74 0 chr11 39377172 39377320 -109406152 - L2 LINE L2 -801 2513 2355 545 321 38 10 chr11 39377344 39377553 -109405919 - MIR SINE MIR -44 218 4 446 211 9 9 chr11 39377708 39377817 -109405655 - MLT1B LTR MaLR 0 390 282 552 186 0 0 chr11 39377824 39377921 -109405551 + MLT2B2 LTR ERVL 350 446 -69 745 168 0 105 chr11 39377921 39378130 -109405342 - MLT1B LTR MaLR -112 278 92 1810 171 20 9 chr11 39378132 39378543 -109404929 + MLT2B1 LTR ERVL 1 462 -53 21 36 0 0 chr11 39378636 39378664 -109404808 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr11 39378702 39378737 -109404735 + AT_rich Low_complexity Low_complexity 1 35 0 385 351 53 18 chr11 39379930 39380101 -109403371 + MIR3 SINE MIR 16 192 -16 195 42 0 0 chr11 39381088 39381112 -109402360 + (GA)n Simple_repeat Simple_repeat 2 25 0 485 298 190 0 chr11 39382132 39382337 -109401135 + MIR SINE MIR 4 247 -15 181 321 214 0 chr11 39382344 39382456 -109401016 - MIR SINE MIR -105 157 22 388 316 53 38 chr11 39382588 39382797 -109400675 - MIR SINE MIR -10 252 41 221 272 185 56 chr11 39383573 39383735 -109399737 + MER5A DNA MER1_type 1 183 -6 358 318 56 49 chr11 39384687 39384954 -109398518 - L1ME4a LINE L1 -14 6107 5839 429 289 43 65 chr11 39385005 39385375 -109398097 - L1ME4a LINE L1 -312 5809 5448 2908 129 4 2 chr11 39385469 39386068 -109397404 - L1M1 LINE L1 -591 5714 5114 1995 142 0 10 chr11 39386626 39386921 -109396551 - AluSx SINE Alu -17 295 4 256 302 155 17 chr11 39387936 39388052 -109395420 - L2 LINE L2 -3 3310 3179 24 53 0 0 chr11 39388201 39388239 -109395233 + AT_rich Low_complexity Low_complexity 1 38 0 196 309 85 32 chr11 39392517 39392611 -109390861 - L2 LINE L2 -2111 1203 1105 366 312 143 13 chr11 39392628 39392782 -109390690 - MIR SINE MIR -69 193 20 22 56 0 0 chr11 39394776 39394812 -109388660 + AT_rich Low_complexity Low_complexity 1 36 0 2541 70 0 3 chr11 39395069 39395381 -109388091 - AluY SINE Alu 0 311 1 2125 198 42 2 chr11 39395381 39395791 -109387681 - MSTB LTR MaLR 0 426 1 8787 169 28 14 chr11 39395791 39397419 -109386053 - MSTB-int LTR MaLR 0 1651 1 1209 189 14 5 chr11 39397419 39397771 -109385701 - MSTB LTR MaLR 0 428 1 228 246 174 0 chr11 39397802 39397871 -109385601 - MIR SINE MIR -105 103 23 315 294 96 22 chr11 39397878 39398014 -109385458 - MIR SINE MIR 0 262 117 425 297 72 63 chr11 39398443 39398887 -109384585 - L2 LINE L2 -8 3305 2858 421 350 91 52 chr11 39400594 39401200 -109382272 - L2 LINE L2 -4 3268 2565 1937 153 51 20 chr11 39401213 39401566 -109381906 - THE1B LTR MaLR 0 364 1 811 276 62 58 chr11 39401671 39402105 -109381367 + MLT1J2 LTR MaLR 1 436 -14 180 0 0 0 chr11 39402212 39402232 -109381240 + (TC)n Simple_repeat Simple_repeat 2 21 0 306 125 0 0 chr11 39402232 39402280 -109381192 + (TG)n Simple_repeat Simple_repeat 2 49 0 206 340 20 50 chr11 39402292 39402392 -109381080 - L2 LINE L2 -16 3297 3201 206 370 102 24 chr11 39402531 39402658 -109380814 - L2 LINE L2 0 3272 3136 1475 223 3 13 chr11 39402859 39403169 -109380303 + AluJo SINE Alu 6 312 0 274 255 41 165 chr11 39404148 39404415 -109379057 - L2 LINE L2 -219 3053 2820 285 359 57 6 chr11 39404962 39405121 -109378351 + L2 LINE L2 2813 2979 -293 778 322 56 32 chr11 39405124 39405556 -109377916 + MARNA DNA Mariner 53 494 -92 267 31 0 0 chr11 39405694 39405726 -109377746 + (CA)n Simple_repeat Simple_repeat 2 33 0 27 0 0 0 chr11 39406086 39406113 -109377359 + AT_rich Low_complexity Low_complexity 1 27 0 282 29 0 0 chr11 39406602 39406637 -109376835 + (CA)n Simple_repeat Simple_repeat 2 36 0 218 208 0 0 chr11 39406991 39407039 -109376433 + (TA)n Simple_repeat Simple_repeat 1 48 0 1023 198 47 22 chr11 39410527 39410759 -109372713 + MIR SINE MIR 2 239 -23 515 217 35 0 chr11 39411008 39411123 -109372349 + MIR SINE MIR 138 256 -6 201 39 0 0 chr11 39411215 39411241 -109372231 + (T)n Simple_repeat Simple_repeat 1 26 0 485 271 8 131 chr11 39413693 39413937 -109369535 + MIR SINE MIR 1 214 -48 2322 109 0 0 chr11 39413993 39414297 -109369175 - AluSx SINE Alu -8 304 1 289 220 275 0 chr11 39414440 39414549 -109368923 + MIR SINE MIR 98 236 -26 248 250 171 0 chr11 39415199 39415275 -109368197 - L2 LINE L2 -17 3296 3208 2023 165 3 9 chr11 39415278 39415617 -109367855 + MER1B DNA MER1_type 1 337 0 1529 212 10 6 chr11 39416643 39416954 -109366518 - AluJb SINE Alu 0 312 1 252 325 0 8 chr11 39418487 39418607 -109364865 - L1MD2 LINE L1 -37 6320 6087 2197 128 0 0 chr11 39418643 39418941 -109364531 + AluSq SINE Alu 1 298 -15 201 264 19 0 chr11 39419830 39419883 -109363589 + L3 LINE CR1 1521 1574 -3 1841 85 4 16 chr11 39421180 39421426 -109362046 + AluSq SINE Alu 1 243 -70 198 0 0 0 chr11 39421444 39421466 -109362006 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 490 184 27 116 chr11 39422287 39422326 -109361146 - MIR SINE MIR -69 193 152 1212 230 33 12 chr11 39422326 39422656 -109360816 - MER46C DNA MER2_type -1 337 1 490 184 27 116 chr11 39422656 39422674 -109360798 - MIR SINE MIR -110 152 134 2041 113 4 0 chr11 39422674 39422948 -109360524 - AluSp SINE Alu -11 302 28 490 184 27 116 chr11 39422948 39423036 -109360436 - MIR SINE MIR -128 134 60 7042 59 2 1 chr11 39423399 39424353 -109359119 + L1PA5 LINE L1 3235 4189 -1957 1393 50 0 0 chr11 39424351 39424549 -109358923 - L1P LINE L1 -2710 3436 3239 * 9554 45 1 0 chr11 39424558 39426504 -109356968 + L1PA5 LINE L1 4205 6151 -3 21 0 0 0 chr11 39426494 39426515 -109356957 + AT_rich Low_complexity Low_complexity 1 21 0 * 1589 236 108 51 chr11 39426511 39427109 -109356363 + LTR9B LTR ERV1 13 644 0 210 246 29 29 chr11 39427325 39427394 -109356078 - L2 LINE L2 -543 2771 2703 664 259 148 7 chr11 39427494 39427799 -109355673 - HAL1 LINE L1 -1044 1463 1116 2132 113 23 0 chr11 39428484 39428785 -109354687 - AluSg SINE Alu -2 308 1 230 380 31 12 chr11 39429030 39429193 -109354279 + L2 LINE L2 2918 3083 -189 2363 86 3 3 chr11 39429782 39430086 -109353386 - AluSx SINE Alu -8 304 1 681 24 0 0 chr11 39430204 39430287 -109353185 - L1PA5 LINE L1 -2 6152 6070 852 287 104 23 chr11 39432390 39432994 -109350478 - L2 LINE L2 -222 3091 2444 369 218 15 105 chr11 39433390 39433523 -109349949 + MER5C DNA MER1_type 1 121 -203 469 149 9 47 chr11 39433547 39433654 -109349818 + MER5C DNA MER1_type 222 324 0 2225 26 7 0 chr11 39433768 39434037 -109349435 - L1PA3 LINE L1 0 6155 5885 338 323 11 0 chr11 39434281 39434374 -109349098 - MIR3 SINE MIR -3 205 112 409 341 18 6 chr11 39435053 39435217 -109348255 + L3 LINE CR1 1050 1215 -362 295 354 47 24 chr11 39435279 39435406 -109348066 - L2 LINE L2 -16 3256 3127 621 308 90 11 chr11 39435574 39435840 -109347632 + L3 LINE CR1 1215 1501 -76 229 306 111 0 chr11 39435877 39435949 -109347523 + MIR SINE MIR 13 92 -170 185 293 0 0 chr11 39435983 39436024 -109347448 + L2 LINE L2 3254 3294 -19 189 328 15 15 chr11 39436038 39436105 -109347367 + L3 LINE CR1 1509 1575 -2 233 362 53 0 chr11 39436765 39436859 -109346613 - MIR3 SINE MIR -7 201 103 548 318 123 0 chr11 39436901 39437112 -109346360 + MIR SINE MIR 23 259 -3 218 81 27 0 chr11 39437117 39437154 -109346318 + (CTG)n Simple_repeat Simple_repeat 1 38 0 323 228 141 109 chr11 39437226 39437502 -109345970 + Charlie8 DNA MER1_type 35 1417 -1000 422 252 126 38 chr11 39437592 39437751 -109345721 + MER5B DNA MER1_type 1 173 -5 409 333 58 62 chr11 39439709 39439985 -109343487 - L2 LINE L2 0 3272 2998 10222 24 3 0 chr11 39440229 39442208 -109341264 - L1PA2 LINE L1 0 6155 4173 716 171 0 0 chr11 39443060 39443183 -109340289 + MER3 DNA MER1_type 48 123 -86 1439 163 29 3 chr11 39443190 39443503 -109339969 + MER3 DNA MER1_type 2234 2554 0 309 162 0 0 chr11 39443503 39443571 -109339901 + (TTTA)n Simple_repeat Simple_repeat 2 69 0 185 224 0 105 chr11 39443628 39443704 -109339768 + MER5B DNA MER1_type 2 69 -109 308 289 41 10 chr11 39443761 39443858 -109339614 + MER5A DNA MER1_type 90 189 0 339 295 36 9 chr11 39444038 39444150 -109339322 - MIR SINE MIR -67 195 81 401 250 18 122 chr11 39444264 39444428 -109339044 - MIR SINE MIR -21 241 95 993 130 62 6 chr11 39444428 39444590 -109338882 + MLT1B LTR MaLR 1 171 -219 303 244 76 76 chr11 39444759 39444890 -109338582 + L2 LINE L2 3180 3310 -3 257 220 0 0 chr11 39445357 39445407 -109338065 - MIR SINE MIR -77 131 82 22 70 0 0 chr11 39447210 39447253 -109336219 + AT_rich Low_complexity Low_complexity 1 43 0 295 286 48 12 chr11 39448001 39448085 -109335387 - L2 LINE L2 -31 3241 3155 250 274 155 60 chr11 39448830 39448998 -109334474 + MIR SINE MIR 31 214 -48 269 326 51 51 chr11 39449407 39449545 -109333927 - MER5A DNA MER1_type -12 177 40 225 154 0 0 chr11 39450278 39450317 -109333155 + (TA)n Simple_repeat Simple_repeat 1 39 0 223 167 0 0 chr11 39450508 39450550 -109332922 + (CA)n Simple_repeat Simple_repeat 1 42 0 942 290 121 19 chr11 39450567 39450988 -109332484 + MLT1J LTR MaLR 45 508 -3 837 248 64 41 chr11 39450988 39451282 -109332190 + MLT1J LTR MaLR 209 509 -2 717 270 53 0 chr11 39451375 39451564 -109331908 + MIR SINE MIR 12 210 -52 21 36 0 0 chr11 39451566 39451594 -109331878 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 39451648 39451670 -109331802 + AT_rich Low_complexity Low_complexity 1 22 0 545 260 77 24 chr11 39451740 39451948 -109331524 - L1ME4a LINE L1 -228 5893 5675 575 247 145 44 chr11 39451948 39452396 -109331076 - L2 LINE L2 -25 3288 2771 245 380 20 10 chr11 39452680 39452780 -109330692 + L2 LINE L2 3149 3249 -23 1963 211 37 5 chr11 39453234 39453670 -109329802 + L1MB7 LINE L1 5724 6173 -11 350 323 17 83 chr11 39454596 39454896 -109328576 + L2 LINE L2 2919 3198 -74 846 269 9 14 chr11 39458333 39458549 -109324923 + MIR SINE MIR 9 223 -39 29 28 0 0 chr11 39458570 39458606 -109324866 + AT_rich Low_complexity Low_complexity 1 36 0 304 356 40 27 chr11 39458606 39458828 -109324644 + L2 LINE L2 2194 2418 -896 306 251 228 6 chr11 39458886 39459053 -109324419 + L1ME LINE L1 5650 5853 -268 301 203 0 17 chr11 39459341 39459400 -109324072 + L2 LINE L2 3250 3307 -6 202 363 106 9 chr11 39460763 39460876 -109322596 - MIR SINE MIR -63 145 22 22 35 0 0 chr11 39463116 39463145 -109320327 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 39463341 39463362 -109320110 + AT_rich Low_complexity Low_complexity 1 21 0 434 311 0 46 chr11 39463968 39464119 -109319353 - MER5A DNA MER1_type -38 151 8 1941 124 0 60 chr11 39464303 39464617 -109318855 - AluSx SINE Alu -17 295 1 1805 154 114 40 chr11 39465845 39466247 -109317225 - MSTB1 LTR MaLR 0 432 1 317 290 0 0 chr11 39466447 39466540 -109316932 - L1ME LINE L1 -5947 123 31 5466 178 69 21 chr11 39466604 39467843 -109315629 + Charlie1 DNA MER1_type 1424 2722 -39 4848 43 0 0 chr11 39467894 39468505 -109314967 - L1P LINE L1 -3199 2947 2337 16366 69 1 1 chr11 39468505 39471483 -109311989 + L1PA5 LINE L1 3221 6161 0 200 344 16 16 chr11 39472383 39472447 -109311025 - L2 LINE L2 -14 3299 3236 330 267 216 11 chr11 39473108 39473284 -109310188 + MIR SINE MIR 3 214 -48 576 306 57 42 chr11 39474967 39475350 -109308122 - MLT1J2 LTR MaLR 0 450 62 1212 148 88 0 chr11 39476344 39476561 -109306911 + MER46A DNA MER2_type 1 236 0 10558 103 34 3 chr11 39476840 39479282 -109304190 - L1PA5 LINE L1 0 6300 3819 304 250 0 0 chr11 39480202 39480262 -109303210 + L2 LINE L2 3208 3267 -5 225 315 146 66 chr11 39480337 39480699 -109302773 + L2 LINE L2 1633 2023 -1291 243 114 0 0 chr11 39480721 39480765 -109302707 + (TTTTA)n Simple_repeat Simple_repeat 1 44 0 645 27 0 0 chr11 39480765 39480838 -109302634 - L1PA5 LINE L1 -24 6130 6058 188 333 0 17 chr11 39481015 39481075 -109302397 + L2 LINE L2 2234 2292 -1022 239 222 212 20 chr11 39481349 39481448 -109302024 + L2 LINE L2 3196 3313 0 508 347 97 56 chr11 39481545 39481957 -109301515 + L2 LINE L2 2841 3269 -3 29 0 0 0 chr11 39482192 39482221 -109301251 + AT_rich Low_complexity Low_complexity 1 29 0 2062 140 0 0 chr11 39482689 39482981 -109300491 + AluSx SINE Alu 1 292 -20 386 272 147 7 chr11 39484016 39484152 -109299320 + MIR SINE MIR 32 186 -76 549 201 45 15 chr11 39486435 39486569 -109296903 - L1MC1 LINE L1 -1 6332 6195 198 0 0 0 chr11 39486608 39486630 -109296842 + (TG)n Simple_repeat Simple_repeat 1 22 0 2999 107 38 2 chr11 39486630 39487069 -109296403 - L1MB1 LINE L1 -8 6160 5703 232 289 13 0 chr11 39487073 39487149 -109296323 + (TG)n Simple_repeat Simple_repeat 2 78 0 302 311 185 30 chr11 39487233 39487368 -109296104 - L2 LINE L2 -1 3271 3116 315 191 109 64 chr11 39487369 39487479 -109295993 + MER3 DNA MER1_type 48 162 -47 758 174 0 0 chr11 39487488 39487620 -109295852 + MER3 DNA MER1_type 2234 2365 0 * 1926 172 88 30 chr11 39487617 39487653 -109295819 - MLT2A2 LTR ERVL 0 554 522 468 51 0 0 chr11 39487653 39487712 -109295760 + (TA)n Simple_repeat Simple_repeat 2 60 0 1926 172 88 30 chr11 39487712 39488190 -109295282 - MLT2A2 LTR ERVL -32 522 1 854 183 102 24 chr11 39488192 39488438 -109295034 + MER3 DNA MER1_type 2359 2623 0 263 342 94 23 chr11 39488523 39488995 -109294477 - L2 LINE L2 -212 3060 2554 1608 156 38 35 chr11 39489175 39489464 -109294008 - AluJo SINE Alu -22 290 1 1562 170 0 4 chr11 39490329 39490576 -109292896 - AluJo SINE Alu -64 248 3 632 318 171 27 chr11 39490944 39491388 -109292084 + L2 LINE L2 2805 3312 -1 1915 225 86 48 chr11 39491748 39492366 -109291106 + LTR9B LTR ERV1 4 644 0 405 121 17 0 chr11 39492411 39492469 -109291003 + HUERS-P3b LTR ERV1 38 96 -7322 667 217 76 19 chr11 39492472 39492629 -109290843 + HUERS-P3b LTR ERV1 409 574 -6844 * 6680 155 22 32 chr11 39492624 39493767 -109289705 + HUERS-P3b LTR ERV1 747 1877 -5541 3467 72 88 22 chr11 39493766 39493938 -109289534 + HUERS-P3b LTR ERV1 2111 2270 -5148 * 2331 100 0 0 chr11 39493938 39494237 -109289235 + AluSg SINE Alu 1 299 -11 3467 72 88 22 chr11 39494237 39494563 -109288909 + HUERS-P3b LTR ERV1 2270 2642 -4776 2259 196 45 2 chr11 39494563 39494986 -109288486 - LTR8 LTR ERV1 -250 441 1 7895 159 56 52 chr11 39494986 39495969 -109287503 + HUERS-P3 LTR ERV1 1008 1985 -5433 2105 106 14 0 chr11 39495969 39496253 -109287219 + AluSx SINE Alu 1 288 -24 7895 159 56 52 chr11 39496253 39497214 -109286258 + HUERS-P3 LTR ERV1 1985 2940 -4478 2367 100 0 0 chr11 39497214 39497514 -109285958 - AluY SINE Alu -11 300 1 7895 159 56 52 chr11 39497514 39498724 -109284748 + HUERS-P3 LTR ERV1 2940 4143 -3275 2170 87 3 7 chr11 39498724 39499035 -109284437 - AluSp SINE Alu 0 310 1 7895 159 56 52 chr11 39499035 39499199 -109284273 + HUERS-P3 LTR ERV1 4143 6945 -473 1353 197 4 16 chr11 39499469 39499761 -109283711 + HUERS-P3 LTR ERV1 7163 8919 0 23892 90 8 9 chr11 39499792 39502760 -109280712 + L1P LINE L1 5 2971 -3175 2929 12 0 3 chr11 39502760 39503079 -109280393 - AluYb8 SINE Alu 0 318 1 23892 90 8 9 chr11 39503079 39503371 -109280101 + L1P LINE L1 2971 3262 -2884 283 358 108 0 chr11 39504078 39504254 -109279218 + MIR SINE MIR 34 228 -34 397 198 72 63 chr11 39504491 39504602 -109278870 - MER103 DNA DNA -41 125 14 195 204 0 0 chr11 39504605 39504649 -109278823 + CT-rich Low_complexity Low_complexity 4 47 0 436 217 252 0 chr11 39504886 39505001 -109278471 - MER5A DNA MER1_type -6 183 40 367 246 183 48 chr11 39504989 39505115 -109278357 + MER5A DNA MER1_type 47 189 0 * 806 180 197 11 chr11 39505122 39505305 -109278167 - MER20 DNA MER1_type 0 219 3 612 250 70 0 chr11 39505504 39505660 -109277812 - MIR SINE MIR -21 241 75 240 250 0 28 chr11 39506337 39506409 -109277063 + L3 LINE CR1 792 861 -716 911 296 0 9 chr11 39506478 39506711 -109276761 - MIR SINE MIR -19 243 13 1349 186 73 36 chr11 39507989 39508290 -109275182 - AluJo SINE Alu 0 312 1 441 313 27 12 chr11 39508434 39508601 -109274871 - MIR SINE MIR -42 166 2 550 93 0 0 chr11 39508686 39508761 -109274711 - MADE1 DNA Mariner -5 75 1 2121 143 14 172 chr11 39508916 39509382 -109274090 + LTR32 LTR ERVL 1 367 -104 2285 56 0 24 chr11 39509382 39509709 -109273763 + AluY SINE Alu 1 320 0 2121 143 14 172 chr11 39509709 39509800 -109273672 + LTR32 LTR ERVL 367 471 0 3413 181 25 32 chr11 39510488 39511179 -109272293 - MER67C LTR ERV1 -24 686 1 1124 223 103 107 chr11 39511978 39512569 -109270903 + LTR49 LTR ERV1 5 593 -2 3192 38 8 5 chr11 39513113 39513483 -109269989 - L1PA8 LINE L1 0 6172 5802 515 57 14 0 chr11 39513483 39513553 -109269919 + L1PA8 LINE L1 5728 5798 -374 2031 89 0 4 chr11 39513554 39513823 -109269649 - AluY SINE Alu -1 310 43 452 293 102 18 chr11 39516541 39516762 -109266710 - MIR SINE MIR -23 239 4 224 343 48 0 chr11 39516873 39516978 -109266494 + L2 LINE L2 3180 3289 -24 1049 229 5 0 chr11 39518544 39518732 -109264740 - MER5A DNA MER1_type 0 189 1 351 263 172 0 chr11 39518937 39519091 -109264381 + MIR SINE MIR 21 200 -62 353 261 11 23 chr11 39519771 39519859 -109263613 + MIR3 SINE MIR 81 167 -41 180 0 0 0 chr11 39520691 39520711 -109262761 + (T)n Simple_repeat Simple_repeat 1 20 0 219 114 0 0 chr11 39521191 39521226 -109262246 + (GA)n Simple_repeat Simple_repeat 2 36 0 210 37 0 0 chr11 39522643 39522670 -109260802 + (TCCC)n Simple_repeat Simple_repeat 3 29 0 299 312 116 98 chr11 39522672 39523111 -109260361 - L2 LINE L2 -14 3258 2812 2180 116 0 0 chr11 39523223 39523515 -109259957 + AluSg SINE Alu 1 292 -18 231 319 69 0 chr11 39523929 39524001 -109259471 - L2 LINE L2 -54 3218 3142 241 322 61 9 chr11 39524109 39524224 -109259248 - L2 LINE L2 -571 2743 2623 2060 135 0 13 chr11 39524764 39525067 -109258405 + AluSx SINE Alu 5 303 -9 558 242 230 17 chr11 39525088 39525266 -109258206 - MIR SINE MIR -41 221 6 2191 164 63 0 chr11 39526617 39526984 -109256488 + MLT1B LTR MaLR 1 390 0 350 222 11 22 chr11 39527818 39527908 -109255564 + MER117 DNA MER1_type 2 90 -107 2387 72 7 3 chr11 39528043 39528336 -109255136 + AluY SINE Alu 1 294 -17 872 100 23 8 chr11 39528336 39528460 -109255012 - L1PB2 LINE L1 -6 6145 6020 228 321 143 0 chr11 39528556 39528640 -109254832 + Charlie8 DNA MER1_type 121 216 -2201 279 356 60 42 chr11 39529106 39529553 -109253919 + L2 LINE L2 2250 2777 -537 2232 96 10 3 chr11 39530043 39530346 -109253126 - AluSg SINE Alu -5 305 1 958 189 74 0 chr11 39530447 39530637 -109252835 - MER3 DNA MER1_type -1 208 5 183 80 0 0 chr11 39531307 39531332 -109252140 + (TAA)n Simple_repeat Simple_repeat 3 27 0 217 305 32 21 chr11 39531332 39531427 -109252045 - MIR SINE MIR -8 254 159 336 256 120 0 chr11 39531481 39531614 -109251858 + MIR SINE MIR 114 262 0 2351 93 0 7 chr11 39531622 39531924 -109251548 - AluSp SINE Alu -13 300 1 213 315 8 92 chr11 39531924 39532054 -109251418 - MIR SINE MIR -111 151 33 224 356 102 8 chr11 39532457 39532575 -109250897 - L2 LINE L2 -2 3270 3142 223 323 138 24 chr11 39532855 39533022 -109250450 - L2 LINE L2 -527 2787 2602 240 298 18 0 chr11 39533133 39533190 -109250282 - L2 LINE L2 -21 3292 3235 494 285 149 42 chr11 39534564 39534852 -109248620 + MLT1J2 LTR MaLR 57 375 -75 1022 215 132 87 chr11 39534860 39535284 -109248188 - LTR50 LTR ERVL -352 443 1 319 138 77 31 chr11 39535284 39535345 -109248127 + MLT1J2 LTR MaLR 366 429 -21 1652 164 64 0 chr11 39535723 39536004 -109247468 - AluJo SINE Alu -13 299 1 533 203 61 108 chr11 39536032 39536244 -109247228 - L1MC3 LINE L1 -829 6956 6755 1234 253 98 35 chr11 39536304 39536755 -109246717 + L2 LINE L2 2827 3305 -8 333 335 61 31 chr11 39536809 39537165 -109246307 + L2 LINE L2 2692 3071 -201 1310 218 47 66 chr11 39537251 39537632 -109245840 - MLT1A2 LTR MaLR 0 374 1 210 291 239 8 chr11 39539051 39539168 -109244304 + MIR SINE MIR 119 262 0 580 310 22 5 chr11 39539357 39539541 -109243931 - MER5A DNA MER1_type -1 188 2 607 316 63 26 chr11 39539593 39540161 -109243311 - MLT2E LTR ERVL 0 628 1 283 176 29 73 chr11 39540612 39540636 -109242836 + MLT1D LTR MaLR 1 25 -480 2165 148 13 48 chr11 39540636 39541013 -109242459 - THE1B LTR MaLR 0 364 1 283 176 29 73 chr11 39541013 39541056 -109242416 + MLT1D LTR MaLR 25 65 -440 28 0 0 0 chr11 39541071 39541099 -109242373 + AT_rich Low_complexity Low_complexity 1 28 0 857 199 28 25 chr11 39541103 39541459 -109242013 + MLT1D LTR MaLR 61 502 -3 387 0 0 0 chr11 39541470 39541513 -109241959 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2331 133 42 31 chr11 39542079 39542463 -109241009 - MLT1B LTR MaLR 0 390 3 615 249 127 21 chr11 39542929 39543166 -109240306 + MLT1G LTR MaLR 15 276 -314 402 267 8 17 chr11 39543174 39543294 -109240178 + MLT1G LTR MaLR 437 555 0 559 330 106 4 chr11 39543828 39544064 -109239408 + MIR SINE MIR 2 261 -1 290 356 96 0 chr11 39544123 39544227 -109239245 + L2 LINE L2 3199 3312 -1 365 314 19 0 chr11 39544855 39544960 -109238512 - MIR SINE MIR -2 260 154 974 222 11 0 chr11 39545192 39545372 -109238100 + MER5A DNA MER1_type 3 184 -5 971 146 48 0 chr11 39545596 39545761 -109237711 + L1PBa LINE L1 28 200 -6663 10487 153 38 32 chr11 39545761 39548156 -109235316 + L1PBa LINE L1 634 3013 -3849 2100 125 26 3 chr11 39548156 39548461 -109235011 + AluSx SINE Alu 1 312 0 10487 153 38 32 chr11 39548461 39548697 -109234775 + L1PBa LINE L1 3013 3246 -3616 733 118 0 0 chr11 39548697 39548790 -109234682 + AluS SINE Alu 3 95 -217 1950 138 31 0 chr11 39548790 39549079 -109234393 + AluSx SINE Alu 1 298 -14 10487 153 38 32 chr11 39549079 39550641 -109232831 + L1PBa LINE L1 3245 5132 -1730 505 358 19 5 chr11 39550673 39550880 -109232592 + L2 LINE L2 2678 2887 -427 6649 185 39 17 chr11 39550896 39552580 -109230892 - L1M1 LINE L1 -4065 1263 10 323 320 53 27 chr11 39552588 39552738 -109230734 + L2 LINE L2 2896 3049 -223 768 236 136 48 chr11 39552763 39553094 -109230378 - MLT1G LTR MaLR -215 375 16 186 296 61 82 chr11 39553164 39553262 -109230210 + L2 LINE L2 3176 3271 -1 329 273 73 36 chr11 39553333 39553443 -109230029 + L2 LINE L2 3200 3313 0 330 342 58 89 chr11 39554098 39554342 -109229130 + L2 LINE L2 2246 2496 -818 462 292 7 0 chr11 39554342 39554479 -109228993 - MIR SINE MIR -2 260 123 330 342 58 89 chr11 39554479 39554806 -109228666 + L2 LINE L2 2496 2931 -383 791 256 49 34 chr11 39554810 39555076 -109228396 - L2 LINE L2 0 3313 3044 966 262 72 23 chr11 39555080 39555385 -109228087 - L2 LINE L2 -372 2942 2623 492 163 0 0 chr11 39556026 39556112 -109227360 - L1MA4 LINE L1 -2 6298 6213 554 167 10 0 chr11 39556112 39556208 -109227264 + L1MA4 LINE L1 5795 5891 -409 561 183 58 0 chr11 39556771 39556891 -109226581 + Charlie5 DNA MER1_type 1 127 -2485 * 1591 176 52 29 chr11 39556889 39557270 -109226202 + Charlie5 DNA MER1_type 2235 2624 0 1986 180 118 9 chr11 39557997 39558448 -109225024 + Charlie1b DNA MER1_type 1 500 -23 445 254 58 29 chr11 39558573 39558711 -109224761 - MER5A DNA MER1_type 0 189 48 415 314 41 37 chr11 39559742 39560013 -109223459 + MLT1K LTR MaLR 275 546 -42 2071 65 24 21 chr11 39560047 39560338 -109223134 - AluSx SINE Alu -20 292 1 477 244 191 12 chr11 39561115 39561157 -109222315 + MER3 DNA MER1_type 1 34 -175 2292 93 3 3 chr11 39561157 39561458 -109222014 - AluSg SINE Alu -9 301 1 477 244 191 12 chr11 39561458 39561583 -109221889 + MER3 DNA MER1_type 34 198 -11 194 365 82 12 chr11 39561698 39561783 -109221689 + MIR SINE MIR 24 114 -94 379 264 49 49 chr11 39562853 39562997 -109220475 + MER117 DNA MER1_type 1 144 -53 345 246 85 51 chr11 39563002 39563120 -109220352 + L2 LINE L2 3190 3311 -2 673 255 132 17 chr11 39563540 39563775 -109219697 - MIR SINE MIR 0 262 1 270 252 73 57 chr11 39564194 39564317 -109219155 - L3b LINE CR1 -140 1443 1319 333 196 0 0 chr11 39564460 39564516 -109218956 - MLT1E2 LTR MaLR 0 626 571 1452 184 54 0 chr11 39564520 39564781 -109218691 + AluJo SINE Alu 1 275 -37 506 305 6 18 chr11 39564895 39565059 -109218413 + MIR SINE MIR 3 164 -98 375 311 51 25 chr11 39565403 39565599 -109217873 - MLT1K LTR MaLR -379 209 9 269 341 96 18 chr11 39566146 39566313 -109217159 - MIR SINE MIR -81 181 2 22 0 0 0 chr11 39567227 39567249 -109216223 + AT_rich Low_complexity Low_complexity 1 22 0 2274 127 0 0 chr11 39567784 39568092 -109215380 - AluSx SINE Alu -2 310 3 917 178 18 18 chr11 39568984 39569153 -109214319 + MER58B DNA MER1_type 173 341 0 270 317 148 47 chr11 39569153 39569491 -109213981 - L2 LINE L2 -52 3220 2849 2248 117 0 0 chr11 39569688 39569987 -109213485 + AluSq SINE Alu 1 299 -14 2026 165 209 0 chr11 39570103 39570533 -109212939 + MLT2B1 LTR ERVL 1 520 0 22 0 0 0 chr11 39570670 39570692 -109212780 + AT_rich Low_complexity Low_complexity 1 22 0 199 283 0 17 chr11 39570719 39570779 -109212693 + L2 LINE L2 3214 3272 0 1785 197 44 87 chr11 39571544 39571591 -109211881 - MLT2B3 LTR ERVL -4 550 502 1051 188 181 56 chr11 39571591 39571895 -109211577 - MER2 DNA MER2_type -2 342 1 1785 197 44 87 chr11 39571895 39572420 -109211052 - MLT2B3 LTR ERVL -52 502 3 229 139 0 0 chr11 39573104 39573140 -109210332 - MIR SINE MIR -109 153 118 25 31 0 0 chr11 39573657 39573689 -109209783 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr11 39573823 39573845 -109209627 + AT_rich Low_complexity Low_complexity 1 22 0 2093 142 3 0 chr11 39573878 39574187 -109209285 + AluSx SINE Alu 1 310 -2 199 378 39 19 chr11 39574321 39574477 -109208995 + MIR SINE MIR 2 160 -102 25 53 0 18 chr11 39574512 39574550 -109208922 + AT_rich Low_complexity Low_complexity 1 39 -17 1004 58 0 0 chr11 39574550 39574670 -109208802 - L1MA1 LINE L1 -7 6295 6176 25 53 0 18 chr11 39574670 39574688 -109208784 + AT_rich Low_complexity Low_complexity 39 56 0 21 57 0 0 chr11 39574771 39574806 -109208666 + AT_rich Low_complexity Low_complexity 1 35 0 439 175 232 43 chr11 39574840 39575051 -109208421 - L1ME4a LINE L1 -67 6054 5804 1742 267 103 32 chr11 39576148 39576702 -109206770 + MLT1E LTR MaLR 1 593 0 2333 50 0 0 chr11 39577879 39578200 -109205272 - AluY SINE Alu 0 322 2 407 253 164 20 chr11 39578393 39578539 -109204933 + LTR67 LTR ERVL 383 549 -8 285 333 9 9 chr11 39580176 39580287 -109203185 - MIR3 SINE MIR -7 201 91 252 264 0 14 chr11 39580456 39580528 -109202944 + CT-rich Low_complexity Low_complexity 2 72 0 942 214 27 41 chr11 39580562 39580782 -109202690 + MER20 DNA MER1_type 3 219 0 1055 284 145 20 chr11 39582115 39582570 -109200902 - LTR33 LTR ERVL -9 512 1 592 289 54 25 chr11 39582594 39582798 -109200674 + MIR SINE MIR 46 255 -7 831 274 29 22 chr11 39583360 39583637 -109199835 + LTR16A LTR ERVL 172 450 0 21 36 0 0 chr11 39586571 39586599 -109196873 + AT_rich Low_complexity Low_complexity 1 28 0 615 356 20 4 chr11 39586948 39587198 -109196274 + MIR SINE MIR 4 257 -5 337 244 168 0 chr11 39588127 39588246 -109195226 - MIR SINE MIR -12 250 112 * 2495 324 205 13 chr11 39588209 39589637 -109193835 + L2 LINE L2 1388 3164 -149 4972 78 34 1 chr11 39589637 39590342 -109193130 - L1PB2 LINE L1 -1 6150 5423 2495 324 205 13 chr11 39590342 39590526 -109192946 + L2 LINE L2 3164 3311 -2 297 0 0 0 chr11 39591439 39591472 -109192000 + (TA)n Simple_repeat Simple_repeat 2 34 0 1387 204 80 49 chr11 39591600 39592052 -109191420 + MLT1C LTR MaLR 1 466 -1 295 284 21 21 chr11 39592203 39592298 -109191174 + L2 LINE L2 2945 3039 -233 597 204 121 19 chr11 39592305 39592569 -109190903 + MER33 DNA MER1_type 6 296 -28 283 298 48 57 chr11 39592658 39592690 -109190782 + L2 LINE L2 3171 3202 -111 2327 89 0 22 chr11 39592690 39593005 -109190467 - AluSx SINE Alu -4 308 1 283 298 48 57 chr11 39593005 39593096 -109190376 + L2 LINE L2 3202 3293 -20 226 290 51 108 chr11 39593784 39593998 -109189474 - L2 LINE L2 -1 3271 3070 290 319 103 38 chr11 39594021 39594234 -109189238 + MIR SINE MIR 36 262 0 195 100 0 0 chr11 39595184 39595214 -109188258 + (GA)n Simple_repeat Simple_repeat 2 31 0 2314 98 0 0 chr11 39595593 39595889 -109187583 - AluSg SINE Alu -14 296 1 786 336 44 19 chr11 39596129 39596492 -109186980 - LTR16C LTR ERVL -4 487 116 435 63 0 0 chr11 39597295 39597358 -109186114 + (CA)n Simple_repeat Simple_repeat 1 63 0 300 253 235 24 chr11 39598949 39599119 -109184353 - MIR SINE MIR 0 262 57 236 213 16 0 chr11 39599594 39599655 -109183817 + MER103 DNA DNA 92 153 -13 1067 161 86 17 chr11 39600006 39600314 -109183158 + L1MA8 LINE L1 5966 6291 0 266 269 154 58 chr11 39600378 39600586 -109182886 - L2 LINE L2 0 3313 3086 360 315 55 33 chr11 39600876 39601057 -109182415 + MIR3 SINE MIR 11 195 -13 329 162 15 0 chr11 39601736 39601804 -109181668 + (TG)n Simple_repeat Simple_repeat 1 69 0 917 262 65 10 chr11 39601982 39602291 -109181181 + LTR16A LTR ERVL 113 438 -12 268 349 142 14 chr11 39602295 39602513 -109180959 + L2 LINE L2 2679 2924 -390 24 32 0 0 chr11 39602518 39602549 -109180923 + AT_rich Low_complexity Low_complexity 1 31 0 624 299 72 5 chr11 39602618 39602812 -109180660 - MIR SINE MIR 0 262 56 2621 156 21 28 chr11 39602957 39603490 -109179982 - L1MA9 LINE L1 -2 6310 5782 210 165 24 12 chr11 39603577 39603662 -109179810 + (TA)n Simple_repeat Simple_repeat 2 87 0 318 200 22 22 chr11 39603688 39603868 -109179604 + (TA)n Simple_repeat Simple_repeat 1 180 0 279 214 6 13 chr11 39603951 39604110 -109179362 + (TA)n Simple_repeat Simple_repeat 2 159 0 5738 65 1 0 chr11 39604141 39604909 -109178563 - L1PA7 LINE L1 0 6154 5386 1291 133 68 12 chr11 39604902 39605151 -109178321 - L1MA9 LINE L1 -536 5776 5514 * 206 316 89 0 chr11 39605593 39605672 -109177800 + MIR SINE MIR 119 204 -58 321 267 0 95 chr11 39605985 39606090 -109177382 - MIR SINE MIR -73 135 41 383 325 50 0 chr11 39606271 39606391 -109177081 + L2 LINE L2 3134 3259 -13 717 202 89 65 chr11 39606756 39607003 -109176469 - L2 LINE L2 0 3313 3061 12893 217 17 19 chr11 39607016 39609611 -109173861 - L1PA16 LINE L1 -9 7595 5010 1815 175 38 14 chr11 39609611 39609977 -109173495 - THE1C LTR MaLR 0 375 1 12893 217 17 19 chr11 39609977 39612021 -109171451 - L1PA16 LINE L1 -2594 5010 2964 184 300 0 17 chr11 39612072 39612132 -109171340 - L2 LINE L2 0 3313 3255 22 0 0 0 chr11 39612159 39612181 -109171291 + AT_rich Low_complexity Low_complexity 1 22 0 255 200 0 0 chr11 39612318 39612373 -109171099 - MLT2B2 LTR ERVL 0 515 461 2652 254 23 12 chr11 39612512 39613341 -109170131 - L1PA16 LINE L1 -4513 3068 2231 660 343 48 10 chr11 39614056 39614455 -109169017 - L1PA16 LINE L1 -7166 415 2 207 167 0 0 chr11 39616205 39616247 -109167225 + (TG)n Simple_repeat Simple_repeat 2 43 0 326 233 27 0 chr11 39617372 39617445 -109166027 + MER81 DNA DNA 40 114 0 338 292 62 7 chr11 39617453 39617597 -109165875 - MIR SINE MIR -20 242 91 342 268 65 0 chr11 39617597 39617720 -109165752 + L1ME4a LINE L1 5990 6120 -1 1150 93 32 14 chr11 39618540 39618756 -109164716 + L1PBa LINE L1 1888 2107 -4756 345 248 97 9 chr11 39618768 39618881 -109164591 - MIR SINE MIR -67 141 19 252 59 0 0 chr11 39619481 39619515 -109163957 + (GA)n Simple_repeat Simple_repeat 1 34 0 716 284 59 9 chr11 39619569 39619791 -109163681 - MIR SINE MIR -23 239 7 2367 45 3 0 chr11 39620845 39621134 -109162338 - L1PA3 LINE L1 -3 6152 5863 272 410 0 0 chr11 39621619 39621719 -109161753 - L2 LINE L2 -489 2825 2726 436 273 18 0 chr11 39623254 39623364 -109160108 + MER81 DNA DNA 3 114 0 414 39 0 0 chr11 39623386 39623438 -109160034 + (TG)n Simple_repeat Simple_repeat 1 52 0 23 0 0 0 chr11 39623524 39623547 -109159925 + AT_rich Low_complexity Low_complexity 1 23 0 392 141 30 10 chr11 39624123 39624222 -109159250 + (TCTA)n Simple_repeat Simple_repeat 4 104 0 683 335 115 24 chr11 39624287 39624660 -109158812 + L2 LINE L2 124 530 -2784 247 303 30 24 chr11 39626215 39626380 -109157092 + HAL1b LINE L1 120 285 -1063 683 233 22 61 chr11 39626663 39626891 -109156581 + MER20 DNA MER1_type 1 219 0 536 282 35 20 chr11 39626901 39627103 -109156369 + MLT1J LTR MaLR 165 369 -142 1640 221 69 118 chr11 39627167 39627659 -109155813 - L2 LINE L2 -507 2807 2288 296 185 154 0 chr11 39627659 39627724 -109155748 + MER116 DNA Mariner 5 79 -1 1640 221 69 118 chr11 39627724 39627847 -109155625 - L2 LINE L2 -1026 2288 2161 2513 117 94 3 chr11 39628053 39628256 -109155216 + MSTA LTR MaLR 1 184 -244 225 0 0 0 chr11 39628256 39628281 -109155191 + (TC)n Simple_repeat Simple_repeat 1 25 0 2513 117 94 3 chr11 39628281 39628469 -109155003 + MSTA LTR MaLR 184 428 0 1606 194 49 12 chr11 39628469 39628792 -109154680 + MER1B DNA MER1_type 1 337 0 371 271 68 53 chr11 39628874 39629081 -109154391 - L1ME3A LINE L1 -17 6153 5944 963 259 88 24 chr11 39629092 39630362 -109153110 - L1ME3A LINE L1 -405 5761 4384 234 214 36 0 chr11 39630464 39630520 -109152952 + GA-rich Low_complexity Low_complexity 2 59 0 499 348 73 28 chr11 39631266 39631466 -109152006 + MLT1K LTR MaLR 16 206 -382 1898 189 15 53 chr11 39631466 39631878 -109151594 - MSTD LTR MaLR 0 396 1 499 348 73 28 chr11 39631878 39632102 -109151370 + MLT1K LTR MaLR 206 459 -129 259 307 59 20 chr11 39632547 39632648 -109150824 + MIR SINE MIR 42 146 -62 296 200 0 14 chr11 39633420 39633490 -109149982 + MLT1L LTR MaLR 544 612 -3 2244 88 3 0 chr11 39633720 39634004 -109149468 + AluSq SINE Alu 1 285 -28 189 0 0 0 chr11 39634004 39634025 -109149447 + (CAAAC)n Simple_repeat Simple_repeat 2 22 0 720 93 27 67 chr11 39634101 39634251 -109149221 - MER53 DNA DNA -2 187 44 1845 106 0 0 chr11 39634419 39634656 -109148816 + AluSg/x SINE Alu 66 302 -8 2495 126 3 3 chr11 39635385 39635749 -109147723 - THE1B LTR MaLR 0 364 1 1825 153 121 16 chr11 39636038 39636417 -109147055 - MSTA LTR MaLR -2 426 8 225 0 0 0 chr11 39636419 39636444 -109147028 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 297 0 0 0 chr11 39636443 39636476 -109146996 + (TG)n Simple_repeat Simple_repeat 2 34 0 182 286 24 0 chr11 39637538 39637580 -109145892 + L2 LINE L2 2653 2695 -619 314 322 147 76 chr11 39637820 39638174 -109145298 + L2 LINE L2 2804 3182 -90 207 114 0 0 chr11 39638231 39638266 -109145206 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 182 359 11 22 chr11 39638928 39639020 -109144452 + MIR3 SINE MIR 105 195 -13 309 280 10 40 chr11 39639131 39639231 -109144241 + L2 LINE L2 3216 3312 -1 * 503 317 33 45 chr11 39639222 39639465 -109144007 - MIR SINE MIR -3 259 20 254 96 19 19 chr11 39640132 39640184 -109143288 + Charlie5 DNA MER1_type 2506 2557 -55 1094 156 235 21 chr11 39640184 39640422 -109143050 + AluSg1 SINE Alu 6 294 -15 430 263 57 29 chr11 39640744 39640919 -109142553 - MER117 DNA MER1_type -1 196 17 185 169 17 0 chr11 39641148 39641207 -109142265 + (TA)n Simple_repeat Simple_repeat 1 60 0 575 180 0 0 chr11 39641543 39641632 -109141840 - AluJ/FLAM SINE Alu -223 89 1 526 261 83 47 chr11 39642974 39643227 -109140245 - MIR SINE MIR 0 262 1 279 276 90 90 chr11 39643508 39643653 -109139819 - MIR SINE MIR -71 191 47 277 170 82 143 chr11 39647005 39647152 -109136320 - MLT1H LTR MaLR -2 547 410 343 213 38 0 chr11 39647244 39647324 -109136148 - MLT1H LTR MaLR -321 228 146 279 382 0 9 chr11 39647550 39647660 -109135812 + MER5A DNA MER1_type 73 181 -8 1827 171 10 7 chr11 39649106 39649404 -109134068 + AluJo SINE Alu 1 299 -13 234 309 85 43 chr11 39651369 39651463 -109132009 + MER91C DNA MER1_type 4 101 -39 407 221 25 6 chr11 39651818 39651976 -109131496 + CT-rich Low_complexity Low_complexity 4 164 0 319 213 37 22 chr11 39651995 39652131 -109131341 + CT-rich Low_complexity Low_complexity 4 141 0 628 314 81 28 chr11 39652134 39652339 -109131133 - L2 LINE L2 -1 3312 3086 554 224 71 24 chr11 39652339 39652509 -109130963 - MER5B DNA MER1_type 0 178 1 628 314 81 28 chr11 39652509 39652586 -109130886 - L2 LINE L2 -227 3086 3015 667 248 6 6 chr11 39652644 39652801 -109130671 + MER63A DNA MER1_type 53 209 -1 189 225 0 0 chr11 39652806 39652846 -109130626 - L2 LINE L2 -345 2969 2930 2395 215 36 55 chr11 39653921 39654544 -109128928 - MLT1E2 LTR MaLR 0 626 1 2147 95 0 7 chr11 39654815 39655120 -109128352 - AluSq SINE Alu 0 303 1 455 272 52 0 chr11 39655146 39655282 -109128190 + L2 LINE L2 3156 3298 -15 276 286 20 61 chr11 39655281 39655379 -109128093 - L2 LINE L2 -9 3263 3170 * 1866 186 75 8 chr11 39655435 39655834 -109127638 + MSTA LTR MaLR 1 426 -2 1475 156 21 55 chr11 39656046 39656372 -109127100 + MER58B DNA MER1_type 27 341 0 22 0 0 0 chr11 39657245 39657267 -109126205 + AT_rich Low_complexity Low_complexity 1 22 0 367 288 8 34 chr11 39658402 39658520 -109124952 - MIR3 SINE MIR -12 196 82 784 294 22 0 chr11 39658591 39658819 -109124653 + MIR SINE MIR 11 243 -19 222 173 19 19 chr11 39658826 39658878 -109124594 + (CTA)n Simple_repeat Simple_repeat 1 52 0 342 322 44 0 chr11 39659493 39659676 -109123796 + L1ME3 LINE L1 5691 5881 -281 216 0 0 0 chr11 39660980 39661004 -109122468 + (TA)n Simple_repeat Simple_repeat 2 25 0 190 204 37 37 chr11 39661531 39661585 -109121887 - MIR SINE MIR -66 196 143 23 0 0 0 chr11 39661774 39661797 -109121675 + AT_rich Low_complexity Low_complexity 1 23 0 485 135 42 0 chr11 39661798 39661894 -109121578 - L1MA9 LINE L1 0 6312 6213 358 285 128 34 chr11 39662353 39662532 -109120940 + MIR SINE MIR 67 262 0 205 380 13 13 chr11 39662530 39662609 -109120863 + L2 LINE L2 3190 3268 -4 * 404 303 9 0 chr11 39664540 39664649 -109118823 + MIR3 SINE MIR 97 206 -2 385 393 31 47 chr11 39665003 39665118 -109118354 + L2 LINE L2 2880 2995 -277 180 0 0 0 chr11 39665118 39665138 -109118334 + (TA)n Simple_repeat Simple_repeat 2 21 0 288 53 0 0 chr11 39665138 39665176 -109118296 + (TTTAA)n Simple_repeat Simple_repeat 3 40 0 2343 86 0 0 chr11 39665176 39665466 -109118006 - AluY SINE Alu -21 290 1 385 393 31 47 chr11 39665466 39665669 -109117803 + L2 LINE L2 2992 3195 -77 225 250 40 26 chr11 39665773 39665849 -109117623 - MIR3 SINE MIR -43 165 89 308 202 107 12 chr11 39666532 39666616 -109116856 + MER94 DNA DNA 13 104 -30 526 227 0 21 chr11 39666728 39666869 -109116603 - MLT1E3 LTR MaLR -421 203 66 393 270 8 8 chr11 39666765 39666891 -109116581 - MLT2C1 LTR ERVL -250 147 22 * 1491 216 110 35 chr11 39666940 39667402 -109116070 - MLT1D LTR MaLR -8 497 1 315 280 54 11 chr11 39667416 39667509 -109115963 - L2 LINE L2 -19 3253 3157 985 226 6 0 chr11 39667696 39667877 -109115595 - MER5A DNA MER1_type -7 182 1 582 304 177 0 chr11 39667936 39668196 -109115276 + L2 LINE L2 3008 3313 0 188 135 21 219 chr11 39669025 39669121 -109114351 + L3b LINE CR1 1274 1350 -233 491 286 0 0 chr11 39669138 39669250 -109114222 - MER81 DNA DNA -2 112 1 207 339 31 0 chr11 39669260 39669325 -109114147 + L3 LINE CR1 1414 1480 -97 255 31 0 0 chr11 39669661 39669693 -109113779 + (TG)n Simple_repeat Simple_repeat 1 32 0 324 102 0 0 chr11 39669693 39669742 -109113730 + (GA)n Simple_repeat Simple_repeat 2 50 0 290 267 64 47 chr11 39670160 39670332 -109113140 + MLT1J LTR MaLR 7 181 -330 270 233 150 45 chr11 39670429 39670562 -109112910 + MLT1L LTR MaLR 465 611 -4 324 0 0 0 chr11 39670732 39670768 -109112704 + (TG)n Simple_repeat Simple_repeat 2 37 0 483 238 7 41 chr11 39671921 39672068 -109111404 + MER3 DNA MER1_type 68 209 0 30 0 0 0 chr11 39672223 39672253 -109111219 + AT_rich Low_complexity Low_complexity 1 30 0 383 320 59 23 chr11 39672347 39672363 -109111109 + MIR SINE MIR 19 33 -229 2733 59 50 0 chr11 39672363 39672721 -109110751 + L1PA7 LINE L1 5773 6148 -6 383 320 59 23 chr11 39672721 39672923 -109110549 + MIR SINE MIR 33 245 -17 210 174 0 0 chr11 39672928 39672974 -109110498 + (TG)n Simple_repeat Simple_repeat 1 46 0 193 398 108 25 chr11 39673315 39673629 -109109843 + L2 LINE L2 2814 3153 -119 502 224 7 41 chr11 39673873 39674020 -109109452 + MER3 DNA MER1_type 68 209 0 237 224 35 0 chr11 39676505 39676563 -109106909 + MIR SINE MIR 132 191 -71 521 97 39 0 chr11 39678454 39678557 -109104915 + (TCTA)n Simple_repeat Simple_repeat 2 108 0 183 394 0 0 chr11 39679089 39679160 -109104312 - L2 LINE L2 0 3272 3202 262 314 51 5 chr11 39679296 39679455 -109104017 + MIR SINE MIR 18 251 -11 243 228 128 100 chr11 39680546 39680726 -109102746 - MLT1J1 LTR MaLR -25 421 237 803 195 47 18 chr11 39680860 39681029 -109102443 - MLT1J1 LTR MaLR -270 176 3 192 40 0 0 chr11 39681295 39681320 -109102152 + (CA)n Simple_repeat Simple_repeat 1 25 0 665 271 28 10 chr11 39731697 39732042 -109051430 - L1M1 LINE L1 -4457 3289 2829 286 155 70 0 chr11 39732038 39732109 -109051363 + L1MA8 LINE L1 6216 6291 0 * 425 271 0 30 chr11 39732163 39732329 -109051143 - L1MDa LINE L1 -4715 1825 1665 2475 90 0 0 chr11 39732456 39732790 -109050682 - L1PA7 LINE L1 -2 6152 5819 276 30 0 0 chr11 39733748 39733781 -109049691 + (CA)n Simple_repeat Simple_repeat 1 33 0 10834 131 8 17 chr11 39733808 39735667 -109047805 - Tigger1 DNA MER2_type -58 2360 519 3258 69 23 2 chr11 39735667 39736206 -109047266 + L1P3 LINE L1 5169 5715 -439 428 35 17 0 chr11 39736486 39736544 -109046928 + (CA)n Simple_repeat Simple_repeat 2 60 0 198 273 55 0 chr11 39736744 39736799 -109046673 - L2 LINE L2 -47 3225 3168 327 121 0 0 chr11 39737174 39737232 -109046240 + (TG)n Simple_repeat Simple_repeat 1 58 0 239 321 78 47 chr11 39737979 39738172 -109045300 + MIR SINE MIR 20 218 -44 23 33 0 0 chr11 39738743 39738773 -109044699 + AT_rich Low_complexity Low_complexity 1 30 0 714 301 46 0 chr11 39739223 39739505 -109043967 + L1ME3A LINE L1 5455 5749 -421 714 254 13 49 chr11 39739510 39739734 -109043738 + L1ME3A LINE L1 5941 6156 -14 331 278 148 18 chr11 39739728 39739951 -109043521 + HAL1 LINE L1 1549 1800 -707 * 21 0 0 0 chr11 39740207 39740228 -109043244 + AT_rich Low_complexity Low_complexity 1 21 0 318 266 47 84 chr11 39740529 39740804 -109042668 + HAL1 LINE L1 2228 2492 -15 1651 220 40 42 chr11 39740898 39741375 -109042097 - MLT1D LTR MaLR -7 498 23 242 241 0 0 chr11 39742159 39742213 -109041259 + (TA)n Simple_repeat Simple_repeat 2 55 0 217 321 211 0 chr11 39742274 39742383 -109041089 - MIR SINE MIR -111 151 20 321 262 136 0 chr11 39742432 39742535 -109040937 - L2 LINE L2 0 3313 3197 2181 115 0 3 chr11 39742557 39742886 -109040586 - AluSc SINE Alu 0 309 1 322 399 31 0 chr11 39743889 39744052 -109039420 + MIR SINE MIR 20 187 -75 1676 144 107 4 chr11 39744067 39744330 -109039142 + AluSx SINE Alu 1 290 -22 343 327 45 36 chr11 39744610 39744833 -109038639 - MIR SINE MIR -14 248 24 2578 54 0 13 chr11 39745825 39746139 -109037333 + AluY SINE Alu 1 310 -1 183 302 23 35 chr11 39746265 39746351 -109037121 + L2 LINE L2 2918 3002 -270 268 270 99 9 chr11 39746982 39747093 -109036379 + MIR SINE MIR 75 195 -67 639 209 92 10 chr11 39749063 39749259 -109034213 - MER69 DNA AcHobo -8 2518 2307 1373 227 10 52 chr11 39749273 39749657 -109033815 + MLT1A2 LTR MaLR 1 368 -6 1894 214 177 15 chr11 39749863 39750455 -109033017 - MER69 DNA AcHobo -1754 772 85 773 227 67 4 chr11 39750455 39750724 -109032748 - L1M4 LINE L1 -3539 2607 2322 182 349 12 0 chr11 39751121 39751204 -109032268 + L2 LINE L2 2419 2502 -812 35 0 0 0 chr11 39751622 39751657 -109031815 + AT_rich Low_complexity Low_complexity 1 35 0 312 304 18 18 chr11 39752061 39752173 -109031299 - MIR3 SINE MIR -7 201 90 1504 226 44 16 chr11 39752253 39752704 -109030768 + L1MB7 LINE L1 4577 5040 -1106 1800 135 57 30 chr11 39752831 39753165 -109030307 - MER61A LTR ERV1 0 343 1 6983 97 12 8 chr11 39753165 39754538 -109028934 - MER61A-int LTR ERV1 0 5217 3796 760 183 19 29 chr11 39754538 39754771 -109028701 + L1MB7 LINE L1 5202 5432 -742 1748 227 65 11 chr11 39754773 39755298 -109028174 + L1MB7 LINE L1 5617 6169 -15 216 0 0 0 chr11 39755302 39755326 -109028146 + (TA)n Simple_repeat Simple_repeat 1 24 0 236 363 24 40 chr11 39755332 39755456 -109028016 - MIR SINE MIR -93 169 48 322 308 45 26 chr11 39756274 39756430 -109027042 + MIR SINE MIR 103 261 -1 750 189 54 38 chr11 39756462 39756647 -109026825 - MER3 DNA MER1_type 0 209 22 2575 110 6 3 chr11 39758834 39759197 -109024275 + THE1B LTR MaLR 1 364 0 232 289 54 7 chr11 39759331 39759454 -109024018 + (TATG)n Simple_repeat Simple_repeat 4 137 -22 204 40 0 0 chr11 39759454 39759479 -109023993 + (CA)n Simple_repeat Simple_repeat 1 25 0 232 289 54 7 chr11 39759479 39759504 -109023968 + (TATG)n Simple_repeat Simple_repeat 137 159 0 240 141 33 54 chr11 39759520 39759612 -109023860 + (TG)n Simple_repeat Simple_repeat 1 90 0 614 278 165 0 chr11 39759616 39759828 -109023644 + MIR SINE MIR 13 259 -3 208 324 0 0 chr11 39760635 39760703 -109022769 + L2 LINE L2 3159 3226 -87 223 226 0 19 chr11 39761313 39761366 -109022106 + L2 LINE L2 3262 3313 0 595 300 21 33 chr11 39761817 39762057 -109021415 - MIR SINE MIR -25 237 1 270 316 18 35 chr11 39764446 39764560 -109018912 + MIR SINE MIR 11 122 -140 1024 149 59 5 chr11 39764769 39764991 -109018481 - L1MA7 LINE L1 -7 6284 6051 575 190 0 156 chr11 39764991 39765228 -109018244 + L1MA7 LINE L1 5874 6073 -218 839 181 1 30 chr11 39765254 39765459 -109018013 - MLT1B LTR MaLR -6 384 173 1978 159 26 6 chr11 39765494 39765839 -109017633 - MLT1A1 LTR MaLR -13 352 1 394 319 48 34 chr11 39766289 39766496 -109016976 + MIR SINE MIR 47 256 -6 1032 239 22 70 chr11 39766652 39767007 -109016465 - MER46C DNA MER2_type 0 338 1 22 0 0 0 chr11 39767100 39767122 -109016350 + AT_rich Low_complexity Low_complexity 1 22 0 427 283 99 36 chr11 39768176 39768399 -109015073 - MER102b DNA MER1_type -13 328 92 304 122 82 0 chr11 39768401 39768450 -109015022 - MIR SINE MIR -87 175 123 281 301 0 38 chr11 39768506 39768639 -109014833 + MLT1H LTR MaLR 80 207 -342 232 344 41 33 chr11 39768834 39768956 -109014516 - MIR SINE MIR -121 141 19 1680 217 32 51 chr11 39769355 39769829 -109013643 - MLT1C LTR MaLR -2 465 1 2375 56 7 3 chr11 39770757 39771059 -109012413 - AluY SINE Alu -8 303 1 2372 66 23 3 chr11 39771444 39771749 -109011723 - AluY SINE Alu 0 311 1 374 257 55 0 chr11 39771964 39772073 -109011399 + MIR SINE MIR 34 148 -114 1058 222 50 60 chr11 39772074 39772511 -109010961 - MER69 DNA AcHobo -4 2522 2090 549 249 44 4 chr11 39772662 39772857 -109010615 - MLT1B LTR MaLR -11 373 165 329 161 0 0 chr11 39772861 39772917 -109010555 - MLT1B LTR MaLR -318 56 1 780 289 132 25 chr11 39774128 39774778 -109008694 - L2 LINE L2 0 3313 2592 879 323 104 34 chr11 39774967 39775867 -109007605 - L2 LINE L2 -2264 1050 88 408 281 54 18 chr11 39776046 39776213 -109007259 - MIR SINE MIR -76 186 14 364 306 186 0 chr11 39776278 39776402 -109007070 + L2 LINE L2 3121 3267 -5 229 197 0 49 chr11 39776424 39776485 -109006987 + T-rich Low_complexity Low_complexity 5 62 0 435 38 0 0 chr11 39776934 39776987 -109006485 + (TG)n Simple_repeat Simple_repeat 1 53 0 207 0 0 0 chr11 39776986 39777009 -109006463 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 384 22 0 0 chr11 39777640 39777685 -109005787 + (TG)n Simple_repeat Simple_repeat 2 46 0 341 342 20 35 chr11 39777803 39778005 -109005467 - MIR SINE MIR -42 220 22 2234 103 0 3 chr11 39778744 39779045 -109004427 + AluSx SINE Alu 2 301 -11 180 111 0 0 chr11 39779481 39779508 -109003964 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 279 278 113 40 chr11 39779509 39779660 -109003812 - MIR SINE MIR -16 246 85 2401 91 45 6 chr11 39779660 39780013 -109003459 - THE1C LTR MaLR 0 375 9 372 259 70 21 chr11 39782434 39782577 -109000895 - MLT1J LTR MaLR -257 254 105 391 373 81 18 chr11 39783486 39783908 -108999564 - L2 LINE L2 -213 3059 2608 843 252 67 17 chr11 39785077 39785315 -108998157 + MIR SINE MIR 12 261 -1 324 240 40 0 chr11 39786172 39786247 -108997225 - ORSL DNA AcHobo -1 274 197 25 31 0 0 chr11 39786622 39786654 -108996818 + AT_rich Low_complexity Low_complexity 1 32 0 527 266 181 5 chr11 39786654 39786842 -108996630 - MIR SINE MIR -14 248 28 402 314 39 0 chr11 39787813 39788017 -108995455 + L1ME LINE L1 5597 5808 -313 1240 167 104 5 chr11 39788052 39788273 -108995199 + AluJb SINE Alu 1 243 -69 2264 114 9 0 chr11 39789129 39789479 -108993993 + L1MA3 LINE L1 5843 6195 -110 2783 213 80 110 chr11 39789566 39790661 -108992811 + L1M2 LINE L1 466 1527 -5962 2063 270 25 3 chr11 39790671 39791319 -108992153 + L1M2 LINE L1 2289 2950 -4546 6720 213 47 16 chr11 39791332 39793285 -108990187 + L1M2 LINE L1 3294 5309 -2256 4775 152 29 56 chr11 39793278 39794683 -108988789 + L1M2 LINE L1 5736 7096 -614 * 192 77 0 0 chr11 39794975 39795001 -108988471 + (TC)n Simple_repeat Simple_repeat 2 27 0 23 0 0 0 chr11 39795457 39795480 -108987992 + AT_rich Low_complexity Low_complexity 1 23 0 1283 177 71 41 chr11 39795905 39796199 -108987273 + AluJo SINE Alu 1 303 -9 497 348 31 13 chr11 39798314 39798541 -108984931 - MIR SINE MIR -24 238 8 239 318 47 0 chr11 39798660 39798745 -108984727 + MIR SINE MIR 53 141 -121 413 276 58 45 chr11 39799129 39799285 -108984187 - MIR SINE MIR 0 262 105 1459 12 0 0 chr11 39799867 39800033 -108983439 + L1PA2 LINE L1 5986 6151 -4 486 294 24 8 chr11 39801094 39801220 -108982252 + LTR16C LTR ERVL 152 279 -212 290 246 0 0 chr11 39801406 39801463 -108982009 + LTR16C LTR ERVL 286 342 -149 1612 147 163 10 chr11 39803004 39803311 -108980161 - MER47A DNA MER2_type 0 366 13 650 243 200 50 chr11 39803326 39803791 -108979681 - MLT1F1 LTR MaLR -8 559 25 486 218 61 14 chr11 39804302 39804449 -108979023 - MIR SINE MIR -6 256 103 591 261 37 41 chr11 39804479 39804872 -108978600 - L1ME LINE L1 -616 5554 5165 1160 265 61 28 chr11 39805320 39805997 -108977475 - L1ME LINE L1 -2199 3947 3238 27 29 0 0 chr11 39806021 39806055 -108977417 + AT_rich Low_complexity Low_complexity 1 34 0 228 342 13 13 chr11 39806080 39806238 -108977234 - L1ME LINE L1 -3060 3086 2929 321 300 153 12 chr11 39806323 39806493 -108976979 - L1ME3A LINE L1 -7 6163 5970 327 278 52 52 chr11 39806574 39806747 -108976725 - L1MC5 LINE L1 -453 7508 7336 1888 104 41 0 chr11 39806883 39807152 -108976320 - AluSc SINE Alu -5 304 25 1277 288 123 9 chr11 39808360 39808815 -108974657 + MLT1G1 LTR MaLR 82 588 -7 634 238 19 12 chr11 39809068 39809228 -108974244 + MIR SINE MIR 12 172 -90 2088 153 109 8 chr11 39809587 39809972 -108973500 - MSTA LTR MaLR -2 426 3 6737 183 25 10 chr11 39809974 39811207 -108972265 - MSTA-int LTR MaLR 0 1651 400 1088 83 0 21 chr11 39811210 39811355 -108972117 + AluY SINE Alu 1 142 -169 1360 119 9 26 chr11 39811456 39811683 -108971789 - AluY SINE Alu -88 223 1 2461 151 10 0 chr11 39811684 39812081 -108971391 - MSTA-int LTR MaLR -1250 401 1 1564 153 79 31 chr11 39812081 39812442 -108971030 - MSTA LTR MaLR 0 428 1 1592 130 35 32 chr11 39812631 39812916 -108970556 - THE1C LTR MaLR -89 286 1 10615 109 28 11 chr11 39812916 39814470 -108969002 - THE1C-int LTR MaLR 0 1580 1 2092 144 27 27 chr11 39814470 39814845 -108968627 - THE1C LTR MaLR 0 375 1 2062 134 7 0 chr11 39814916 39815215 -108968257 - AluSq SINE Alu -12 301 1 23 68 0 0 chr11 39815278 39815322 -108968150 + AT_rich Low_complexity Low_complexity 1 44 0 876 288 25 8 chr11 39815658 39815898 -108967574 - MIR SINE MIR -2 260 17 933 223 129 6 chr11 39816540 39816890 -108966582 - Charlie4a DNA MER1_type -89 419 27 488 329 13 0 chr11 39817083 39817235 -108966237 + MIR3 SINE MIR 52 205 -3 2645 190 19 25 chr11 39817881 39818408 -108965064 + L1MCa LINE L1 474 997 -5429 2138 106 11 44 chr11 39818409 39818776 -108964696 + L1MA5 LINE L1 5428 5782 -518 872 204 0 0 chr11 39818776 39818933 -108964539 + FRAM SINE Alu 1 153 -23 2373 133 104 8 chr11 39818934 39819407 -108964065 + L1MA5 LINE L1 5771 6288 -12 2951 148 63 3 chr11 39819416 39820003 -108963469 + L1MCa LINE L1 982 1603 -4823 1404 253 106 25 chr11 39820128 39820612 -108962860 + MLT1H LTR MaLR 1 606 -18 370 298 50 0 chr11 39820643 39820764 -108962708 + MIR SINE MIR 65 191 -71 845 242 32 52 chr11 39820951 39821199 -108962273 + MIR SINE MIR 10 252 -10 191 35 0 35 chr11 39821203 39821232 -108962240 + (TTA)n Simple_repeat Simple_repeat 1 28 0 213 136 0 23 chr11 39821547 39821591 -108961881 + (CAAAAA)n Simple_repeat Simple_repeat 5 47 0 512 293 69 5 chr11 39821799 39821987 -108961485 + MIR SINE MIR 51 250 -12 351 309 68 21 chr11 39823457 39823648 -108959824 + MIR SINE MIR 63 262 0 2151 98 44 0 chr11 39824431 39824726 -108958746 + AluSc SINE Alu 1 308 -1 351 282 0 12 chr11 39825227 39825312 -108958160 - MIR SINE MIR -149 113 30 344 293 210 6 chr11 39826295 39826452 -108957020 + MIR SINE MIR 1 189 -73 258 286 0 32 chr11 39827515 39827578 -108955894 + L2 LINE L2 3197 3257 -15 271 248 50 40 chr11 39827741 39827842 -108955630 + MIR SINE MIR 161 262 0 707 299 66 69 chr11 39829685 39829751 -108953721 - MER115 DNA AcHobo 0 693 628 1955 129 14 0 chr11 39829751 39830054 -108953418 - AluSx SINE Alu 0 307 1 707 299 66 69 chr11 39830054 39830533 -108952939 - MER115 DNA AcHobo -65 628 120 534 304 84 30 chr11 39831001 39831238 -108952234 + MIR SINE MIR 12 261 -1 1812 184 3 0 chr11 39831398 39831703 -108951769 + AluSx SINE Alu 1 306 -6 279 54 0 0 chr11 39831956 39831993 -108951479 + (TG)n Simple_repeat Simple_repeat 1 37 0 2292 106 0 3 chr11 39833004 39833315 -108950157 - AluSp SINE Alu -3 310 1 21 0 0 0 chr11 39833410 39833431 -108950041 + AT_rich Low_complexity Low_complexity 1 21 0 912 179 60 55 chr11 39834483 39834701 -108948771 + MER20 DNA MER1_type 1 219 0 337 272 76 0 chr11 39834706 39834798 -108948674 - L3 LINE CR1 -270 1307 1209 28 48 0 0 chr11 39834801 39834843 -108948629 + AT_rich Low_complexity Low_complexity 1 42 0 2514 4 0 0 chr11 39835291 39835563 -108947909 + AluYa5 SINE Alu 39 310 -1 222 288 15 15 chr11 39836600 39836666 -108946806 + MIR3 SINE MIR 10 75 -133 320 286 116 27 chr11 39837298 39837410 -108946062 + MIR3 SINE MIR 48 169 -39 3557 159 32 3 chr11 39837974 39838591 -108944881 + MER41B LTR ERV1 1 635 0 647 203 8 0 chr11 39839216 39839349 -108944123 - L1MA9 LINE L1 -40 6272 6139 962 174 71 75 chr11 39839353 39839606 -108943866 - LTR8A LTR ERV1 0 727 476 2533 137 19 36 chr11 39839768 39840234 -108943238 - LTR8A LTR ERV1 -269 458 1 516 273 50 27 chr11 39840234 39840454 -108943018 - L1MA9 LINE L1 -174 6138 5914 2631 170 37 9 chr11 39840500 39841051 -108942421 - L1MA9 LINE L1 -523 5789 5224 684 217 0 0 chr11 39841076 39841196 -108942276 - FLAM_A SINE Alu -11 122 3 218 250 14 14 chr11 39841570 39841642 -108941830 + (TA)n Simple_repeat Simple_repeat 2 73 0 188 194 0 0 chr11 39842248 39842284 -108941188 - L2 LINE L2 -49 3223 3188 269 196 0 0 chr11 39842841 39842892 -108940580 - L1ME3A LINE L1 -9 6161 6111 1658 271 64 35 chr11 39842941 39843991 -108939481 - L1MEc LINE L1 -2827 3388 2309 370 321 72 17 chr11 39844032 39844269 -108939203 - L1MEc LINE L1 -4122 2274 2025 316 281 44 44 chr11 39844371 39844485 -108938987 - L3 LINE CR1 -674 903 790 2595 128 0 3 chr11 39844543 39844919 -108938553 + THE1C LTR MaLR 1 375 0 24 67 0 0 chr11 39845235 39845280 -108938192 + AT_rich Low_complexity Low_complexity 1 45 0 386 317 55 31 chr11 39845391 39845684 -108937788 - MLT1H LTR MaLR -16 533 196 261 296 49 12 chr11 39846544 39846706 -108936766 + L1ME4a LINE L1 5940 6107 -14 314 349 58 81 chr11 39846971 39847266 -108936206 + L2 LINE L2 2967 3254 -18 592 309 48 0 chr11 39847424 39847612 -108935860 - L2 LINE L2 0 3313 3117 882 155 0 0 chr11 39847618 39847760 -108935712 - L1MB1 LINE L1 -467 5701 5560 * 2234 167 29 37 chr11 39847758 39848213 -108935259 + L1MB1 LINE L1 5696 6146 -22 235 313 76 15 chr11 39848233 39848364 -108935108 - L2 LINE L2 -195 3118 2980 875 211 118 7 chr11 39848382 39848680 -108934792 - MER33 DNA MER1_type 0 324 1 2446 55 10 3 chr11 39848981 39849290 -108934182 - AluY SINE Alu 0 311 1 21 82 0 0 chr11 39849325 39849374 -108934098 + AT_rich Low_complexity Low_complexity 1 49 0 24236 29 3 1 chr11 39849374 39853104 -108930368 - L1PA3 LINE L1 -3 6152 2423 970 291 132 12 chr11 39853708 39854110 -108929362 - LTR16A LTR ERVL 0 450 1 21 71 0 0 chr11 39854143 39854185 -108929287 + AT_rich Low_complexity Low_complexity 1 42 0 379 321 62 0 chr11 39854674 39854867 -108928605 - L1ME LINE L1 -369 5752 5548 265 241 0 74 chr11 39855188 39855296 -108928176 - LTR67 LTR ERVL 0 557 458 1969 214 37 18 chr11 39855334 39855792 -108927680 + MLT1C LTR MaLR 1 467 0 371 217 9 0 chr11 39856276 39856382 -108927090 + GA-rich Low_complexity Low_complexity 3 109 0 750 281 50 23 chr11 39856416 39856637 -108926835 - MIR SINE MIR -15 247 21 191 235 20 20 chr11 39857054 39857105 -108926367 + MIR SINE MIR 96 146 -62 1078 176 19 23 chr11 39857445 39857661 -108925811 - MER20 DNA MER1_type -4 215 1 3281 131 4 57 chr11 39857884 39858528 -108924944 + MER4B LTR ERV1 1 779 0 217 336 277 0 chr11 39858896 39859033 -108924439 - MIR3 SINE MIR -6 202 28 1663 162 10 40 chr11 39859200 39859503 -108923969 - AluJo SINE Alu -10 302 9 230 311 22 22 chr11 39859966 39860056 -108923416 - L3 LINE CR1 -217 1360 1271 343 344 22 22 chr11 39860219 39860446 -108923026 + HERV16 LTR ERVL 4667 4893 -103 445 277 166 20 chr11 39861003 39861256 -108922216 + L2 LINE L2 3011 3300 -13 513 248 115 25 chr11 39861301 39861458 -108922014 - MLT1G1 LTR MaLR -8 582 412 12180 94 36 1 chr11 39861488 39864046 -108919426 - L1PA7 LINE L1 0 6154 3531 4506 103 4 0 chr11 39864046 39864724 -108918748 + L1PA7 LINE L1 2837 3517 -2629 1054 277 28 56 chr11 39864729 39865119 -108918353 - MLT1G1 LTR MaLR -207 388 10 1721 164 18 24 chr11 39865122 39865457 -108918015 + THE1C LTR MaLR 28 360 -15 1974 120 0 0 chr11 39865839 39866106 -108917366 - AluSc SINE Alu -4 305 39 21 0 0 0 chr11 39869199 39869220 -108914252 + AT_rich Low_complexity Low_complexity 1 21 0 1013 278 68 20 chr11 39869311 39869664 -108913808 + MLT1H LTR MaLR 7 376 -173 189 0 0 0 chr11 39869703 39869724 -108913748 + (CAGC)n Simple_repeat Simple_repeat 2 22 0 331 255 31 20 chr11 39870268 39870366 -108913106 + MIR SINE MIR 104 202 -60 1434 144 33 6 chr11 39870870 39871300 -108912172 - LTR54 LTR ERV1 0 510 6 270 329 189 21 chr11 39871427 39871570 -108911902 - L3 LINE CR1 -99 1478 1312 552 204 7 49 chr11 39871836 39871978 -108911494 + Charlie8 DNA MER1_type 87 222 -2195 259 323 31 10 chr11 39872116 39872212 -108911260 + MER5B DNA MER1_type 4 101 -77 357 213 299 24 chr11 39873163 39873290 -108910182 - MIR SINE MIR -1 261 100 201 362 92 31 chr11 39873598 39873761 -108909711 + MER5A DNA MER1_type 14 186 -3 381 292 0 18 chr11 39873851 39873964 -108909508 + L2 LINE L2 3169 3279 -34 296 271 76 59 chr11 39874245 39874363 -108909109 - L2 LINE L2 -215 3057 2938 258 239 33 65 chr11 39874589 39874681 -108908791 + MIR SINE MIR 118 206 -56 364 385 50 5 chr11 39875592 39875813 -108907659 + MIR SINE MIR 32 262 0 183 162 0 0 chr11 39875817 39875854 -108907618 + (TTA)n Simple_repeat Simple_repeat 3 39 0 420 291 17 0 chr11 39876032 39876149 -108907323 - MIR3 SINE MIR -36 172 54 776 297 80 45 chr11 39876161 39876562 -108906910 + LTR16A LTR ERVL 14 428 -22 447 202 64 0 chr11 39876565 39876659 -108906813 - FRAM SINE Alu -76 100 1 281 294 62 31 chr11 39877606 39877766 -108905706 - MLT1J LTR MaLR -344 167 3 25 0 0 0 chr11 39877768 39877793 -108905679 + AT_rich Low_complexity Low_complexity 1 25 0 310 322 49 0 chr11 39877793 39877936 -108905536 - L1ME3A LINE L1 -224 5946 5797 395 286 143 39 chr11 39878039 39878298 -108905174 - L1ME3A LINE L1 -2144 5664 5379 26 82 0 0 chr11 39878338 39878399 -108905073 + AT_rich Low_complexity Low_complexity 1 61 0 511 273 172 55 chr11 39878409 39879510 -108903962 - L1ME3A LINE L1 -846 5300 4071 4016 145 25 27 chr11 39880770 39881480 -108901992 + MER50 LTR ERV1 2 710 -24 301 316 60 0 chr11 39883053 39883186 -108900286 - MIR SINE MIR -56 206 66 204 97 0 0 chr11 39883341 39883372 -108900100 + (TA)n Simple_repeat Simple_repeat 1 31 0 618 328 45 4 chr11 39883956 39884203 -108899269 + MIR SINE MIR 6 262 0 240 208 83 28 chr11 39884610 39884682 -108898790 - L2 LINE L2 -9 3304 3229 437 308 132 60 chr11 39884754 39885118 -108898354 - L3 LINE CR1 -94 1483 1094 24 100 0 0 chr11 39885777 39885857 -108897615 + AT_rich Low_complexity Low_complexity 1 80 0 1906 263 94 21 chr11 39885858 39886217 -108897255 + L1MCc LINE L1 1 333 -6089 2113 138 30 25 chr11 39886217 39886579 -108896893 + THE1B LTR MaLR 1 364 0 1906 263 94 21 chr11 39886579 39886935 -108896537 + L1MCc LINE L1 333 1116 -5306 4166 182 28 19 chr11 39887039 39887936 -108895536 - L1PA15 LINE L1 -1072 5074 4170 5548 132 15 38 chr11 39887938 39889069 -108894403 + L1PA15 LINE L1 5070 6164 -1 222 264 56 0 chr11 39889473 39889545 -108893927 + (CATATA)n Simple_repeat Simple_repeat 1 76 0 239 226 0 21 chr11 39889556 39889649 -108893823 + (CATA)n Simple_repeat Simple_repeat 2 92 0 1205 255 96 22 chr11 39889821 39890593 -108892879 + L1MCc LINE L1 2081 3009 -3932 527 310 60 0 chr11 39890904 39891088 -108892384 + MIR SINE MIR 66 260 -2 428 341 123 3 chr11 39892158 39892492 -108890980 + L1ME4a LINE L1 5724 6097 -24 244 309 118 26 chr11 39892527 39892679 -108890793 - L2 LINE L2 -1 3271 3106 1883 275 240 40 chr11 39892804 39894419 -108889053 - L2 LINE L2 -25 3288 1330 2058 215 29 12 chr11 39894419 39894838 -108888634 + MSTB LTR MaLR 1 426 0 814 264 161 11 chr11 39894858 39895119 -108888353 - L2 LINE L2 -2008 1306 1007 21 57 0 0 chr11 39895561 39895596 -108887876 + AT_rich Low_complexity Low_complexity 1 35 0 1661 271 27 16 chr11 39896147 39896589 -108886883 - ERVL LTR ERVL -3887 1877 1431 2125 222 15 29 chr11 39896705 39897450 -108886022 + ERVL LTR ERVL 3392 4183 -1581 308 160 27 67 chr11 39897390 39897465 -108886007 - ERVL LTR ERVL -1581 4183 4112 * 1096 210 65 52 chr11 39897633 39897923 -108885549 + ERVL LTR ERVL 4163 4456 -1308 823 199 110 5 chr11 39898399 39898590 -108884882 + MER2 DNA MER2_type 1 211 -134 32 26 0 0 chr11 39898595 39898634 -108884838 + AT_rich Low_complexity Low_complexity 1 39 0 180 0 0 0 chr11 39898637 39898657 -108884815 + (CATTT)n Simple_repeat Simple_repeat 3 22 0 182 36 0 36 chr11 39898703 39898731 -108884741 + (TATAA)n Simple_repeat Simple_repeat 5 31 0 457 287 24 48 chr11 39899025 39899192 -108884280 - MIR SINE MIR -4 258 96 479 265 29 0 chr11 39899835 39899971 -108883501 + MER103 DNA DNA 8 147 -19 506 310 32 21 chr11 39900482 39900669 -108882803 + MIR3 SINE MIR 19 207 -1 387 206 116 53 chr11 39902486 39902675 -108880797 + L1ME4a LINE L1 5711 5911 -210 448 253 20 53 chr11 39902912 39903062 -108880410 - MER45A DNA AcHobo -19 159 15 212 392 36 10 chr11 39903156 39903350 -108880122 - L3 LINE CR1 -638 939 741 1152 240 0 11 chr11 39903700 39903971 -108879501 - AluJo SINE Alu -17 295 28 189 279 0 0 chr11 39904228 39904271 -108879201 - MIR3 SINE MIR -49 159 117 689 238 36 18 chr11 39904273 39904441 -108879031 - MER58 DNA MER1_type -170 171 1 251 245 123 38 chr11 39904736 39904842 -108878630 - L1ME4a LINE L1 -22 6099 5985 193 179 71 54 chr11 39906403 39906459 -108877013 - L2 LINE L2 -3 3269 3213 1063 205 5 15 chr11 39906610 39906815 -108876657 + MER3 DNA MER1_type 1 203 -6 2877 145 68 10 chr11 39907700 39908197 -108875275 - MER1A DNA MER1_type 0 527 2 381 219 66 101 chr11 39908292 39908520 -108874952 + MER106A DNA MER1_type 10 229 -7 227 344 175 13 chr11 39909589 39909743 -108873729 - MIR SINE MIR -41 221 43 257 232 84 32 chr11 39909829 39909924 -108873548 - MLT1H LTR MaLR -16 533 434 1639 126 88 32 chr11 39910502 39910787 -108872685 - AluSx SINE Alu -11 301 1 234 230 86 30 chr11 39911376 39911531 -108871941 + L1MC/D LINE L1 5707 5877 -244 22 56 0 0 chr11 39911544 39911580 -108871892 + AT_rich Low_complexity Low_complexity 1 36 0 1226 310 72 24 chr11 39911589 39912416 -108871056 - L2 LINE L2 -54 3259 2384 198 282 59 47 chr11 39913077 39913162 -108870310 + MIR SINE MIR 65 150 -58 521 333 39 22 chr11 39914236 39914626 -108868846 + LTR16A LTR ERVL 24 450 0 581 292 46 40 chr11 39914626 39914951 -108868521 + L1ME3A LINE L1 5589 5915 -255 268 320 62 8 chr11 39915051 39915179 -108868293 - MIR SINE MIR -62 200 66 2022 146 57 40 chr11 39915442 39915866 -108867606 + MSTB1 LTR MaLR 2 432 0 189 291 18 0 chr11 39917698 39917753 -108865719 - L2 LINE L2 0 3313 3258 25 0 0 0 chr11 39917775 39917800 -108865672 + AT_rich Low_complexity Low_complexity 1 25 0 325 333 43 26 chr11 39921897 39922014 -108861458 + L2 LINE L2 3154 3272 0 290 324 137 33 chr11 39922165 39922347 -108861125 + MIR SINE MIR 49 249 -13 2008 151 0 0 chr11 39922348 39922640 -108860832 - AluSx SINE Alu -18 294 3 399 140 19 28 chr11 39922819 39922926 -108860546 + (TA)n Simple_repeat Simple_repeat 1 106 0 21 0 0 0 chr11 39923087 39923108 -108860364 + AT_rich Low_complexity Low_complexity 1 21 0 1004 211 48 0 chr11 39923714 39923923 -108859549 - MER20 DNA MER1_type 0 219 1 496 284 130 6 chr11 39923938 39924107 -108859365 - MIR SINE MIR -2 260 71 1078 222 52 3 chr11 39924429 39924706 -108858766 + L1MD3 LINE L1 6149 6321 -23 201 328 17 42 chr11 39924750 39924869 -108858603 + MIR SINE MIR 32 147 -61 1956 149 42 20 chr11 39926458 39926814 -108856658 + THE1B LTR MaLR 1 364 0 3997 160 42 24 chr11 39927307 39928064 -108855408 + Tigger2 DNA MER2_type 1 771 -1947 1199 117 165 22 chr11 39928091 39928321 -108855151 + Tigger2 DNA MER2_type 2456 2718 0 231 289 92 0 chr11 39929261 39929337 -108854135 - MER63 DNA MER1_type -1 1059 977 42 57 0 0 chr11 39929478 39929548 -108853924 + AT_rich Low_complexity Low_complexity 1 70 0 24 0 0 0 chr11 39929998 39930022 -108853450 + AT_rich Low_complexity Low_complexity 1 24 0 1959 219 43 18 chr11 39930164 39930657 -108852815 - MLT1D LTR MaLR 0 505 1 832 278 95 32 chr11 39930809 39931179 -108852293 + MER110 LTR ERV1 2 394 -97 21 0 0 0 chr11 39931188 39931209 -108852263 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr11 39931511 39931537 -108851935 + AT_rich Low_complexity Low_complexity 1 26 0 660 158 0 38 chr11 39931572 39931755 -108851717 + CT-rich Low_complexity Low_complexity 3 178 0 300 286 122 24 chr11 39932628 39932915 -108850557 - L1ME4a LINE L1 -191 6348 6034 1640 247 30 8 chr11 39933189 39933691 -108849781 - L1ME4a LINE L1 -3362 3202 2690 1445 127 25 4 chr11 39933705 39933941 -108849531 - L1MB5 LINE L1 -1 6173 5933 3349 244 49 23 chr11 39933942 39935593 -108847879 - L1MCb LINE L1 -4863 1182 1 1255 320 40 32 chr11 39935685 39936309 -108847163 + L2 LINE L2 1261 1889 -1425 274 355 19 19 chr11 39937054 39937161 -108846311 + MIR SINE MIR 35 141 -67 416 251 118 37 chr11 39938619 39938806 -108844666 + MIR SINE MIR 61 262 0 203 261 152 33 chr11 39938946 39939038 -108844434 + MIR SINE MIR 50 152 -110 371 247 45 39 chr11 39939095 39939249 -108844223 - MER103 DNA DNA -2 164 10 437 277 15 82 chr11 39940380 39940575 -108842897 + MIR SINE MIR 49 230 -32 268 278 42 89 chr11 39940647 39940838 -108842634 + L2 LINE L2 2625 2806 -508 222 105 0 0 chr11 39941088 39941126 -108842346 + (TC)n Simple_repeat Simple_repeat 2 39 0 180 0 0 0 chr11 39941126 39941146 -108842326 + (CA)n Simple_repeat Simple_repeat 1 20 0 * 258 32 0 0 chr11 39941145 39941176 -108842296 + (GA)n Simple_repeat Simple_repeat 2 32 0 187 279 123 57 chr11 39942656 39942778 -108840694 + MIR SINE MIR 20 149 -113 520 305 21 42 chr11 39942891 39943081 -108840391 + LTR16A1 LTR ERVL 269 454 -3 231 213 0 66 chr11 39943584 39943645 -108839827 + MIR SINE MIR 206 262 0 270 0 0 0 chr11 39944829 39944859 -108838613 + (CA)n Simple_repeat Simple_repeat 2 31 0 448 156 52 12 chr11 39944908 39945081 -108838391 + (TA)n Simple_repeat Simple_repeat 1 180 0 396 173 56 25 chr11 39945111 39945273 -108838199 + (TATAA)n Simple_repeat Simple_repeat 4 170 0 248 161 35 35 chr11 39945403 39945490 -108837982 + (TATAA)n Simple_repeat Simple_repeat 5 91 0 256 62 124 8 chr11 39945501 39945630 -108837842 + (TA)n Simple_repeat Simple_repeat 1 144 0 198 333 60 26 chr11 39945836 39945953 -108837519 - L2 LINE L2 -22 3291 3171 2260 245 32 20 chr11 39946030 39946679 -108836793 + L1MB7 LINE L1 5474 6130 -54 358 289 39 0 chr11 39946694 39946798 -108836674 - MLT1G1 LTR MaLR -61 534 427 240 305 191 43 chr11 39946859 39947000 -108836472 - MLT1G1 LTR MaLR -298 257 96 2080 171 13 0 chr11 39947001 39947380 -108836092 + L1MB1 LINE L1 5778 6161 -7 184 314 20 69 chr11 39947433 39947535 -108835937 - L2 LINE L2 -42 3271 3175 270 0 0 0 chr11 39947724 39947754 -108835718 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 937 156 78 22 chr11 39947754 39947933 -108835539 - AluSg/x SINE Alu -28 284 96 319 36 455 0 chr11 39948457 39948512 -108834960 - MADE1 DNA Mariner 0 80 1 222 362 11 21 chr11 39949538 39949632 -108833840 - L2 LINE L2 -29 3284 3192 1364 273 68 47 chr11 39951124 39951637 -108831835 + MLT1E LTR MaLR 70 593 0 24 32 0 0 chr11 39952606 39952637 -108830835 + AT_rich Low_complexity Low_complexity 1 31 0 730 308 53 4 chr11 39952657 39952904 -108830568 + MIR SINE MIR 2 260 -2 198 71 0 0 chr11 39955757 39955785 -108827687 + (TC)n Simple_repeat Simple_repeat 1 28 0 550 269 48 44 chr11 39956579 39956806 -108826666 + L2 LINE L2 2808 3035 -278 345 336 67 0 chr11 39956848 39956967 -108826505 + L2 LINE L2 3169 3295 -18 32 57 0 0 chr11 39958189 39958242 -108825230 + AT_rich Low_complexity Low_complexity 1 53 0 1589 209 3 7 chr11 39958367 39958663 -108824809 - AluJb SINE Alu -17 295 1 849 249 150 19 chr11 39958756 39959242 -108824230 + MER114 LTR ERV 39 588 -60 1097 289 92 57 chr11 39959695 39960270 -108823202 - MLT1G1 LTR MaLR 0 595 1 1932 128 90 29 chr11 39961357 39961700 -108821772 + THE1B LTR MaLR 1 364 0 10836 111 23 0 chr11 39961700 39963244 -108820228 + THE1B-int LTR MaLR 1 1580 0 1884 142 74 42 chr11 39963244 39963597 -108819875 + THE1B LTR MaLR 1 364 0 523 329 65 10 chr11 39964244 39964645 -108818827 + L1ME4a LINE L1 5512 5934 -187 335 22 0 22 chr11 39964657 39964702 -108818770 + (CA)n Simple_repeat Simple_repeat 2 45 0 12841 237 29 23 chr11 39965273 39967641 -108815831 + L1PA16 LINE L1 2181 4532 -3072 7506 38 12 0 chr11 39967641 39968527 -108814945 + MER11D LTR ERVK 1 897 0 12841 237 29 23 chr11 39968527 39969754 -108813718 + L1PA16 LINE L1 4532 5750 -1854 1836 150 55 17 chr11 39969754 39970115 -108813357 - THE1C LTR MaLR 0 375 1 12841 237 29 23 chr11 39970115 39971971 -108811501 + L1PA16 LINE L1 5750 7604 0 1904 295 35 25 chr11 39972250 39973114 -108810358 - L1MEc LINE L1 -5475 921 50 290 169 96 60 chr11 39974772 39974855 -108808617 - L2 LINE L2 -69 3244 3159 268 191 0 0 chr11 39974862 39974909 -108808563 + AluJo SINE Alu 1 47 -256 1994 132 72 26 chr11 39974909 39975257 -108808215 - THE1B LTR MaLR 0 364 1 11342 101 16 0 chr11 39975257 39976812 -108806660 - THE1B-int LTR MaLR 0 1580 1 1971 149 55 23 chr11 39976815 39977163 -108806309 - THE1B LTR MaLR -3 361 3 1530 174 4 26 chr11 39977164 39977429 -108806043 + AluJo SINE Alu 42 300 -12 185 339 85 79 chr11 39977644 39977833 -108805639 - L2 LINE L2 -411 2903 2714 2380 157 38 0 chr11 39977847 39978267 -108805205 - L1MB3 LINE L1 0 6183 5748 747 109 0 9 chr11 39978267 39978377 -108805095 - AluSg/x SINE Alu -38 274 166 7339 40 1 1 chr11 39978377 39979995 -108803477 + L1PA4 LINE L1 4535 6153 -2 588 187 0 8 chr11 39979996 39980119 -108803353 + L1M3 LINE L1 5652 5773 -410 1103 126 0 0 chr11 39980120 39980271 -108803201 + AluSq/x SINE Alu 1 151 -162 764 314 167 16 chr11 39980286 39980860 -108802612 - L2 LINE L2 -609 2705 2045 1477 302 70 4 chr11 39981123 39981637 -108801835 + MLT1H LTR MaLR 2 549 0 279 389 36 6 chr11 39981812 39981979 -108801493 + MIR3 SINE MIR 30 201 -7 350 271 128 33 chr11 39983842 39984115 -108799357 + L1ME4a LINE L1 5816 6114 -7 429 295 67 58 chr11 39984756 39984980 -108798492 + MIR SINE MIR 2 227 -35 29 28 0 0 chr11 39985238 39985274 -108798198 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr11 39986224 39986245 -108797227 + AT_rich Low_complexity Low_complexity 1 21 0 29 28 0 0 chr11 39987238 39987274 -108796198 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr11 39987401 39987422 -108796050 + AT_rich Low_complexity Low_complexity 1 21 0 328 319 66 16 chr11 39988031 39988213 -108795259 - MIR SINE MIR -6 256 66 772 234 33 5 chr11 39988454 39988638 -108794834 + MER5A DNA MER1_type 1 189 0 195 287 0 81 chr11 39989441 39989528 -108793944 - L2 LINE L2 -9 3304 3225 580 229 0 0 chr11 39989528 39989637 -108793835 + FLAM_A SINE Alu 1 109 -33 24 32 0 0 chr11 39989644 39989675 -108793797 + AT_rich Low_complexity Low_complexity 1 31 0 264 306 14 0 chr11 39989876 39989948 -108793524 - L2 LINE L2 -254 3018 2946 2354 191 12 5 chr11 39990850 39991273 -108792199 - MSTB LTR MaLR 0 426 1 25 51 0 0 chr11 39991473 39991512 -108791960 + AT_rich Low_complexity Low_complexity 1 39 0 587 241 0 36 chr11 39991766 39991903 -108791569 + FLAM_A SINE Alu 1 132 -1 22 35 0 0 chr11 39993785 39993814 -108789658 + AT_rich Low_complexity Low_complexity 1 29 0 771 284 100 11 chr11 39993929 39994278 -108789194 + LTR16C LTR ERVL 112 491 0 230 342 89 37 chr11 39994305 39994495 -108788977 - MIR SINE MIR -13 249 50 1939 161 0 37 chr11 39994704 39995026 -108788446 + AluJo SINE Alu 1 310 -2 349 230 6 6 chr11 39995143 39995317 -108788155 + (TG)n Simple_repeat Simple_repeat 1 174 0 315 326 65 7 chr11 39996029 39996167 -108787305 + MIR SINE MIR 102 247 -15 23 0 0 0 chr11 39997216 39997239 -108786233 + AT_rich Low_complexity Low_complexity 1 23 0 1759 182 38 9 chr11 39997326 39997672 -108785800 - MLT1A1 LTR MaLR -2 363 8 954 215 26 4 chr11 39997673 39997906 -108785566 - MLT1A1-int LTR MaLR -13 1722 1485 418 271 129 12 chr11 39997907 39998077 -108785395 + LTR1 LTR ERV1 28 217 -568 459 205 84 11 chr11 39998131 39998271 -108785201 + LTR28 LTR ERV1 345 423 -11 281 209 39 101 chr11 39998353 39998482 -108784990 + LTR28 LTR ERV1 900 1020 0 503 209 194 0 chr11 39998482 39998621 -108784851 - MLT1A1-int LTR MaLR -247 1488 1323 3842 239 83 29 chr11 39998662 39999815 -108783657 - MLT1A1-int LTR MaLR -511 1224 9 1515 215 13 48 chr11 39999824 40000200 -108783272 - MLT1A1 LTR MaLR -2 363 1 209 216 108 54 chr11 40000424 40000498 -108782974 - L2 LINE L2 -8 3305 3228 180 125 0 0 chr11 40001334 40001366 -108782106 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 536 219 49 55 chr11 40001567 40001596 -108781876 - MER20 DNA MER1_type -56 163 135 2997 150 19 21 chr11 40001596 40002162 -108781310 - MER34B LTR ERV1 0 565 1 536 219 49 55 chr11 40002162 40002296 -108781176 - MER20 DNA MER1_type -84 135 1 1483 170 18 98 chr11 40002401 40002737 -108780735 + AluJo SINE Alu 1 309 -3 3695 166 9 0 chr11 40002750 40003399 -108780073 - MER72 LTR ERV1 -67 655 1 234 0 0 0 chr11 40003816 40003842 -108779630 + (CA)n Simple_repeat Simple_repeat 1 26 0 1700 139 75 42 chr11 40004345 40004705 -108778767 + THE1C LTR MaLR 1 372 -3 196 333 113 27 chr11 40005095 40005245 -108778227 - MIR3 SINE MIR -9 199 37 1451 196 108 23 chr11 40005369 40005975 -108777497 + MER39 LTR ERV1 1 707 0 699 165 8 15 chr11 40007085 40007218 -108776254 - FLAM_C SINE Alu -1 132 1 234 267 17 17 chr11 40007839 40007899 -108775573 + MLT1I LTR MaLR 206 265 -144 1344 177 28 28 chr11 40007992 40008275 -108775197 + MER49 LTR ERV1 1 283 -640 1332 174 34 133 chr11 40008279 40008585 -108774887 + MER4E LTR ERV1 72 328 -451 862 156 0 15 chr11 40008585 40008720 -108774752 + AluJo SINE Alu 1 133 -169 1332 174 34 133 chr11 40008720 40008828 -108774644 + MER4E LTR ERV1 328 445 -334 950 202 0 0 chr11 40008834 40009002 -108774470 - AluJb SINE Alu -13 299 132 696 208 50 19 chr11 40009105 40009264 -108774208 + AluJo SINE Alu 132 295 -17 1474 272 29 26 chr11 40009291 40009941 -108773531 + HAL1b LINE L1 297 948 -400 253 253 258 13 chr11 40009998 40010223 -108773249 + HAL1b LINE L1 1062 1341 -7 296 250 161 6 chr11 40010932 40011100 -108772372 - Tigger8 DNA MER2_type -267 399 206 1305 200 26 56 chr11 40011174 40011479 -108771993 + AluJo SINE Alu 2 297 -5 31 26 0 0 chr11 40012267 40012305 -108771167 + AT_rich Low_complexity Low_complexity 1 38 0 686 69 0 0 chr11 40012426 40012513 -108770959 + AluY SINE Alu 215 301 -10 614 279 27 0 chr11 40012544 40012691 -108770781 + MIR SINE MIR 112 262 0 3773 168 26 11 chr11 40012755 40013471 -108770001 + MER50 LTR ERV1 1 727 -7 424 242 23 31 chr11 40013478 40013606 -108769866 - MIR SINE MIR -49 213 87 1924 174 92 15 chr11 40013628 40014233 -108769239 + LTR8A LTR ERV1 5 727 0 541 252 71 8 chr11 40014236 40014363 -108769109 + MER5B DNA MER1_type 4 138 -40 613 223 87 50 chr11 40014905 40015137 -108768335 + MER39 LTR ERV1 157 379 -328 2425 133 46 12 chr11 40015137 40015551 -108767921 - MSTA LTR MaLR 0 428 1 613 223 87 50 chr11 40015551 40015608 -108767864 + MER39 LTR ERV1 379 630 -77 24 77 0 0 chr11 40015927 40015979 -108767493 + AT_rich Low_complexity Low_complexity 1 52 0 381 134 103 41 chr11 40017393 40017490 -108765982 + MER53 DNA DNA 81 183 -6 539 230 149 0 chr11 40017870 40018020 -108765452 + MER5A DNA MER1_type 4 179 -10 756 281 163 25 chr11 40019323 40019764 -108763708 + MLT1L LTR MaLR 112 613 -2 217 227 0 0 chr11 40021503 40021547 -108761925 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 280 282 10 153 chr11 40021646 40021729 -108761743 + MIR SINE MIR 90 129 -133 1462 164 119 8 chr11 40021729 40021997 -108761475 - AluJb SINE Alu -10 302 5 280 282 10 153 chr11 40021997 40022115 -108761357 + MIR SINE MIR 129 262 0 9141 180 60 13 chr11 40022183 40023860 -108759612 + MER52A LTR ERV1 1 1755 0 1280 94 19 0 chr11 40025150 40025309 -108758163 + AluSc SINE Alu 1 162 -147 21 36 0 0 chr11 40025530 40025558 -108757914 + AT_rich Low_complexity Low_complexity 1 28 0 23 78 0 0 chr11 40025584 40025635 -108757837 + AT_rich Low_complexity Low_complexity 1 51 0 26 101 0 0 chr11 40025780 40025869 -108757603 + AT_rich Low_complexity Low_complexity 1 89 0 2322 159 26 35 chr11 40026402 40026854 -108756618 + MER44D DNA MER2_type 8 455 -250 10295 178 8 20 chr11 40026866 40028772 -108754700 + L1MA3 LINE L1 72 1954 -5611 2293 120 14 0 chr11 40028791 40029142 -108754330 + THE1B LTR MaLR 9 364 0 9235 112 62 37 chr11 40029142 40030504 -108752968 + THE1B-int LTR MaLR 1 1408 -172 2345 105 0 3 chr11 40030504 40030810 -108752662 - AluY SINE Alu -6 305 1 9235 112 62 37 chr11 40030810 40030988 -108752484 + THE1B-int LTR MaLR 1408 1580 0 2499 122 6 0 chr11 40030988 40031350 -108752122 + THE1B LTR MaLR 1 364 0 11841 174 27 25 chr11 40031352 40035915 -108747557 + L1MA3 LINE L1 1980 6555 -1010 216 0 0 0 chr11 40035915 40035939 -108747533 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 11841 174 27 25 chr11 40035939 40036091 -108747381 + L1MA3 LINE L1 6555 6705 -860 21539 116 7 49 chr11 40036101 40042611 -108740861 + L1PA7 LINE L1 12 6153 -1 5088 128 14 21 chr11 40042598 40043519 -108739953 + L1MA3 LINE L1 6708 7622 -102 * 923 224 76 16 chr11 40043530 40043780 -108739692 + MER44D DNA MER2_type 469 605 0 277 315 22 0 chr11 40044578 40044670 -108738802 - MIR3 SINE MIR -5 203 110 2253 77 40 0 chr11 40045061 40045360 -108738112 - AluY SINE Alu 0 311 1 343 307 214 0 chr11 40045625 40045739 -108737733 - MIR SINE MIR -8 254 166 2303 90 7 0 chr11 40045739 40046040 -108737432 + AluY SINE Alu 6 308 -3 343 307 214 0 chr11 40046040 40046117 -108737355 - MIR SINE MIR -96 166 22 2423 190 30 13 chr11 40046165 40046703 -108736769 + MER34C LTR ERV1 37 583 -2 24 67 0 0 chr11 40046873 40046918 -108736554 + AT_rich Low_complexity Low_complexity 1 45 0 189 0 0 0 chr11 40047152 40047173 -108736299 + (A)n Simple_repeat Simple_repeat 1 21 0 243 0 0 0 chr11 40048050 40048077 -108735395 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1398 243 96 30 chr11 40048080 40048579 -108734893 + MLT1H LTR MaLR 18 549 0 2336 106 3 0 chr11 40050369 40050681 -108732791 + AluSp SINE Alu 1 313 0 2013 183 69 2 chr11 40051028 40051433 -108732039 + MSTB1 LTR MaLR 1 432 0 6379 224 67 11 chr11 40051433 40052997 -108730475 + MSTB1-int LTR MaLR 1 1651 0 1624 168 94 41 chr11 40053011 40053405 -108730067 + MSTB1 LTR MaLR 18 432 0 319 227 68 23 chr11 40055411 40055499 -108727973 - MIR SINE MIR -55 207 116 240 279 0 13 chr11 40055947 40056026 -108727446 + MER116 DNA Mariner 2 79 -1 2168 206 35 62 chr11 40056890 40057129 -108726343 + MLT2B3 LTR ERVL 1 245 -309 495 0 0 0 chr11 40057129 40057184 -108726288 + (TC)n Simple_repeat Simple_repeat 2 56 0 2168 206 35 62 chr11 40057184 40057513 -108725959 + MLT2B3 LTR ERVL 245 554 0 1985 166 119 29 chr11 40057513 40057959 -108725513 - MLT1D LTR MaLR -19 486 1 315 350 96 19 chr11 40058017 40058174 -108725298 - MIR3 SINE MIR 0 208 40 359 182 0 23 chr11 40058521 40058609 -108724863 + GA-rich Low_complexity Low_complexity 6 91 0 692 315 55 52 chr11 40058790 40059285 -108724187 - MLT1L LTR MaLR 0 615 120 531 124 8 16 chr11 40059524 40059653 -108723819 + (TAGA)n Simple_repeat Simple_repeat 3 130 0 295 317 32 0 chr11 40059819 40059942 -108723530 - MER94 DNA DNA -3 131 5 1573 211 10 3 chr11 40059996 40060295 -108723177 - AluJo SINE Alu -11 301 1 376 241 0 54 chr11 40060305 40060417 -108723055 - MLT1K LTR MaLR -16 572 467 284 346 39 28 chr11 40060505 40060687 -108722785 - MLT1K LTR MaLR -263 325 142 343 286 155 56 chr11 40061343 40061647 -108721825 - LTR52 LTR ERVL -70 351 18 304 341 85 6 chr11 40061666 40061842 -108721630 + MIR SINE MIR 47 236 -26 1646 158 24 24 chr11 40061986 40062041 -108721431 - MER2 DNA MER2_type -5 340 286 2308 110 0 0 chr11 40062041 40062341 -108721131 - AluSq SINE Alu -13 300 1 1646 158 24 24 chr11 40062341 40062615 -108720857 - MER2 DNA MER2_type -58 287 11 1191 195 105 78 chr11 40062938 40063461 -108720011 + MER67C LTR ERV1 15 509 -5 303 28 0 0 chr11 40063569 40063605 -108719867 + (TG)n Simple_repeat Simple_repeat 1 36 0 867 183 0 0 chr11 40063877 40064014 -108719458 + FRAM SINE Alu 1 137 -39 21 0 0 0 chr11 40064014 40064035 -108719437 + AT_rich Low_complexity Low_complexity 1 21 0 248 108 0 0 chr11 40064035 40064072 -108719400 - Alu SINE Alu -16 286 250 379 230 60 20 chr11 40064250 40064350 -108719122 - L1MC4 LINE L1 -1325 6717 6614 201 219 12 24 chr11 40065050 40065132 -108718340 + T-rich Low_complexity Low_complexity 4 84 0 233 313 12 0 chr11 40065187 40065267 -108718205 + MER110A LTR ERV1 388 468 0 2142 168 17 26 chr11 40065567 40065984 -108717488 - MER61B LTR ERV1 0 425 13 979 183 18 49 chr11 40066044 40066268 -108717204 - MER50 LTR ERV1 0 734 518 4923 49 0 0 chr11 40066413 40067004 -108716468 + LTR10C LTR ERV1 1 591 0 371 241 135 7 chr11 40067131 40067272 -108716200 - MER50 LTR ERV1 -566 168 10 1117 121 68 5 chr11 40068426 40068633 -108714839 - MER4D LTR ERV1 0 903 684 421 245 112 47 chr11 40068796 40069029 -108714443 + L2 LINE L2 2958 3205 -108 2275 113 0 10 chr11 40071825 40072134 -108711338 - AluSx SINE Alu -6 306 1 2063 148 7 0 chr11 40072134 40072437 -108711035 - AluJb SINE Alu -5 307 3 957 125 36 42 chr11 40072479 40072647 -108710825 - AluSg/x SINE Alu -20 292 126 775 178 0 15 chr11 40072841 40072976 -108710496 - FLAM_C SINE Alu 0 133 1 350 294 18 18 chr11 40073437 40073546 -108709926 + CT-rich Low_complexity Low_complexity 6 114 0 442 195 34 8 chr11 40073937 40074055 -108709417 + MER53 DNA DNA 3 123 -66 219 333 0 0 chr11 40074124 40074196 -108709276 + (TA)n Simple_repeat Simple_repeat 1 72 0 267 175 0 0 chr11 40074196 40074253 -108709219 + MER53 DNA DNA 129 185 -4 40306 37 25 1 chr11 40074944 40080949 -108702523 - L1PA2 LINE L1 -2 6153 1 1413 246 35 3 chr11 40080961 40081299 -108702173 + MLT2D LTR ERVL 18 366 -48 303 49 0 0 chr11 40081302 40081343 -108702129 + (TC)n Simple_repeat Simple_repeat 2 42 0 410 49 0 0 chr11 40081373 40081438 -108702034 + MLT2C2 LTR ERVL 416 464 0 387 0 0 0 chr11 40081469 40081512 -108701960 + (TA)n Simple_repeat Simple_repeat 2 44 0 1726 163 37 28 chr11 40081612 40081938 -108701534 - MER1B DNA MER1_type 0 339 11 195 253 0 96 chr11 40082304 40082387 -108701085 + MER5A DNA MER1_type 29 103 -86 202 424 8 0 chr11 40082537 40082669 -108700803 - L2 LINE L2 -492 2822 2690 21 36 0 0 chr11 40082780 40082808 -108700664 + AT_rich Low_complexity Low_complexity 1 28 0 1028 199 43 8 chr11 40082996 40083252 -108700220 - MER31A LTR ERV1 0 485 221 323 300 127 0 chr11 40085473 40085583 -108697889 - L2 LINE L2 0 3272 3149 436 209 82 37 chr11 40085732 40085866 -108697606 - MER3 DNA MER1_type -68 141 2 444 255 60 72 chr11 40086676 40086927 -108696545 + L1ME LINE L1 539 786 -5284 984 246 73 24 chr11 40086934 40087334 -108696138 + L1ME2 LINE L1 5743 6333 -1 2077 60 56 3 chr11 40087439 40087724 -108695748 - AluY SINE Alu -11 300 1 409 362 69 11 chr11 40087853 40088041 -108695431 - MIR SINE MIR -48 214 16 198 0 0 0 chr11 40088127 40088149 -108695323 + (TA)n Simple_repeat Simple_repeat 2 23 0 24 0 0 0 chr11 40088469 40088493 -108694979 + AT_rich Low_complexity Low_complexity 1 24 0 205 296 104 17 chr11 40089002 40089117 -108694355 + MIR SINE MIR 81 205 -57 184 333 49 60 chr11 40089501 40089684 -108693788 - L2 LINE L2 -4 3309 3129 437 258 21 0 chr11 40089728 40089825 -108693647 - MER45A DNA AcHobo -1 177 79 184 286 57 14 chr11 40089890 40089960 -108693512 - L2 LINE L2 -220 3052 2980 285 281 223 14 chr11 40090234 40090373 -108693099 + MIR3 SINE MIR 27 194 -14 320 206 14 14 chr11 40090915 40090988 -108692484 - MLT1I LTR MaLR -14 395 323 246 362 9 0 chr11 40091174 40091279 -108692193 - MLT1I LTR MaLR -256 153 48 213 363 70 56 chr11 40092200 40092415 -108691057 - L2 LINE L2 -5 3267 3050 293 367 109 34 chr11 40092499 40093120 -108690352 - L2 LINE L2 -337 2977 2310 33 56 0 0 chr11 40093251 40093305 -108690167 + AT_rich Low_complexity Low_complexity 1 54 0 468 302 62 22 chr11 40094076 40094255 -108689217 - MLT1H LTR MaLR 0 549 364 27 0 0 0 chr11 40094510 40094537 -108688935 + AT_rich Low_complexity Low_complexity 1 27 0 241 316 191 7 chr11 40096477 40096613 -108686859 - MIR SINE MIR 0 262 102 180 0 0 0 chr11 40096627 40096647 -108686825 + (TTTTTG)n Simple_repeat Simple_repeat 4 23 0 222 299 73 66 chr11 40096741 40096878 -108686594 + L3 LINE CR1 1416 1553 -24 23 0 0 0 chr11 40097514 40097537 -108685935 + AT_rich Low_complexity Low_complexity 1 23 0 2196 99 0 13 chr11 40097588 40097923 -108685549 - AluSg SINE Alu 0 310 1 25 0 0 0 chr11 40098042 40098067 -108685405 + AT_rich Low_complexity Low_complexity 1 25 0 266 235 19 148 chr11 40098133 40098295 -108685177 - L2 LINE L2 -73 3240 3100 709 294 18 18 chr11 40098299 40098527 -108684945 - L2 LINE L2 -823 2491 2264 974 333 15 3 chr11 40098551 40098890 -108684582 - LTR16C LTR ERVL -18 473 131 199 256 49 12 chr11 40099427 40099509 -108683963 - L2 LINE L2 -1604 1710 1626 194 298 94 23 chr11 40099668 40099839 -108683633 - L2 LINE L2 -2 3311 3129 22 0 0 0 chr11 40100157 40100179 -108683293 + AT_rich Low_complexity Low_complexity 1 22 0 255 31 0 0 chr11 40100649 40100681 -108682791 + (TG)n Simple_repeat Simple_repeat 2 33 0 1761 202 34 11 chr11 40100881 40101232 -108682240 - MLT1A1 LTR MaLR 0 365 7 1927 285 49 11 chr11 40101371 40102153 -108681319 - L1M4 LINE L1 -2020 4126 3316 31 104 0 0 chr11 40102627 40102742 -108680730 + AT_rich Low_complexity Low_complexity 1 115 0 223 286 63 0 chr11 40102842 40102905 -108680567 + L2 LINE L2 3205 3271 -1 2089 135 59 9 chr11 40104174 40104514 -108678958 - THE1B LTR MaLR -7 357 1 705 329 45 30 chr11 40104623 40104957 -108678515 - LTR16A LTR ERVL 0 450 112 1517 190 72 0 chr11 40105159 40105464 -108678008 - L1PB4 LINE L1 0 6156 5830 * 2978 227 6 26 chr11 40105455 40106195 -108677277 + L1 LINE L1 4644 5367 -788 645 241 91 20 chr11 40106672 40106871 -108676601 + MLT1E LTR MaLR 9 221 -372 316 294 0 0 chr11 40106902 40106970 -108676502 - MER2 DNA MER2_type -277 68 1 1244 212 53 7 chr11 40106978 40107280 -108676192 - L1MCa LINE L1 -1880 4546 4231 2409 121 17 40 chr11 40107353 40107758 -108675714 + MER75 DNA T2_type 119 514 0 5406 261 30 15 chr11 40107761 40109572 -108673900 - L1MCa LINE L1 -2196 4230 2392 3728 241 20 25 chr11 40109576 40109948 -108673524 + MER21B LTR ERV1 5 377 -486 2047 154 16 19 chr11 40109948 40110324 -108673148 + THE1C LTR MaLR 1 375 0 3728 241 20 25 chr11 40110324 40110784 -108672688 + MER21B LTR ERV1 377 833 -30 1549 157 75 0 chr11 40110812 40111130 -108672342 - L1MCa LINE L1 -4030 2396 2055 1159 213 126 68 chr11 40111133 40111210 -108672262 + MER4C LTR ERV1 1 72 -393 330 26 0 0 chr11 40111210 40111249 -108672223 + (CA)n Simple_repeat Simple_repeat 1 39 0 1159 213 126 68 chr11 40111249 40111754 -108671718 + MER4C LTR ERV1 72 457 -8 220 209 0 0 chr11 40111768 40111811 -108671661 + (CATA)n Simple_repeat Simple_repeat 4 46 0 8130 186 105 9 chr11 40111814 40112453 -108671019 - L1MCa LINE L1 -4366 2060 1483 603 74 0 0 chr11 40112453 40112534 -108670938 + (TTCC)n Simple_repeat Simple_repeat 2 82 0 8130 186 105 9 chr11 40112534 40112556 -108670916 - L1MCa LINE L1 -4943 1483 1465 552 113 0 0 chr11 40112556 40112636 -108670836 + MADE1 DNA Mariner 1 80 0 8130 186 105 9 chr11 40112636 40113828 -108669644 - L1MCa LINE L1 -4961 1465 29 581 343 58 36 chr11 40113830 40114163 -108669309 - HAL1 LINE L1 -2079 428 82 1972 110 3 7 chr11 40114163 40114478 -108668994 + AluSx SINE Alu 1 314 0 581 343 58 36 chr11 40114478 40114554 -108668918 - HAL1 LINE L1 -2425 82 9 212 260 40 0 chr11 40114582 40114632 -108668840 - L3b LINE CR1 -255 1328 1277 2338 70 3 3 chr11 40115949 40116249 -108667223 - AluY SINE Alu -11 300 1 624 332 78 56 chr11 40117018 40117598 -108665874 - L2 LINE L2 0 3313 2717 344 241 12 176 chr11 40117604 40117928 -108665544 - L2 LINE L2 -5 3308 3038 470 338 73 0 chr11 40118972 40119123 -108664349 + MER91A DNA MER1_type 35 196 0 615 318 76 8 chr11 40119149 40119385 -108664087 - MIR SINE MIR -4 258 7 223 255 0 0 chr11 40120497 40120548 -108662924 - L2 LINE L2 0 3313 3263 1732 292 44 81 chr11 40120880 40122202 -108661270 + L2 LINE L2 2024 3290 -23 13782 138 33 14 chr11 40122203 40122706 -108660766 - Tigger1 DNA MER2_type 0 2418 1926 2038 128 3 17 chr11 40122706 40123002 -108660470 - AluSx SINE Alu -20 292 1 13782 138 33 14 chr11 40123002 40124871 -108658601 - Tigger1 DNA MER2_type -492 1926 1 210 118 0 0 chr11 40124879 40124913 -108658559 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 322 384 59 8 chr11 40124984 40125239 -108658233 - L2 LINE L2 -715 2599 2332 1332 177 105 0 chr11 40127733 40128076 -108655396 - L1MB1 LINE L1 -60 6108 5705 729 212 36 0 chr11 40128076 40128241 -108655231 - MER39 LTR ERV1 0 707 537 3231 114 37 2 chr11 40128246 40128737 -108654735 - L1PA11 LINE L1 -1 6173 5666 243 242 43 97 chr11 40128837 40129097 -108654375 - MER39 LTR ERV1 -203 504 219 * 274 222 101 71 chr11 40129071 40129170 -108654302 - LTR48B LTR ERV1 -539 105 4 2232 189 12 27 chr11 40129173 40129655 -108653817 - L1MB1 LINE L1 -460 5708 5238 2355 84 68 11 chr11 40129655 40130010 -108653462 + THE1C LTR MaLR 1 375 0 2232 189 12 27 chr11 40130010 40130105 -108653367 - L1MB1 LINE L1 -930 5238 5143 718 237 41 8 chr11 40130106 40130292 -108653180 + MLT1A1 LTR MaLR 202 365 0 2623 210 50 10 chr11 40130292 40130969 -108652503 - L1MB1 LINE L1 -1581 4565 3862 233 191 21 0 chr11 40130970 40131014 -108652458 - MLT2B1 LTR ERVL 0 515 471 1530 134 40 0 chr11 40131014 40131261 -108652211 - Tigger2 DNA MER2_type 0 2718 2462 4056 172 12 21 chr11 40131311 40132073 -108651399 - Tigger2 DNA MER2_type -1961 757 3 229 286 0 0 chr11 40132112 40132161 -108651311 + Tigger3(Golem) DNA MER2_type 1 49 -2980 231 234 0 21 chr11 40132284 40132331 -108651141 + Tigger3(Golem) DNA MER2_type 2983 3028 -1 535 246 0 0 chr11 40132359 40132473 -108650999 - MLT2B1 LTR ERVL -71 444 331 * 731 145 0 30 chr11 40132471 40132602 -108650870 + Tigger2 DNA MER2_type 253 379 -2339 1698 168 26 41 chr11 40132604 40132870 -108650602 - MLT2B1 LTR ERVL -183 337 76 2031 130 7 10 chr11 40132870 40133163 -108650309 - AluSx SINE Alu -20 292 1 1698 168 26 41 chr11 40133163 40133236 -108650236 - MLT2B1 LTR ERVL -444 76 3 2103 244 75 8 chr11 40133236 40133986 -108649486 - L1MB1 LINE L1 -2279 3867 3068 4126 77 8 65 chr11 40134695 40135786 -108647686 - MER11A LTR ERVK 0 1266 3 2136 190 41 24 chr11 40135789 40136253 -108647219 + LTR38 LTR ERV1 66 537 -19 1843 170 7 0 chr11 40136755 40137049 -108646423 - AluJb SINE Alu -16 296 1 1881 135 120 0 chr11 40137085 40137410 -108646062 - THE1B LTR MaLR 0 364 1 10942 116 11 0 chr11 40137413 40138496 -108644976 - THE1B-int LTR MaLR -3 1577 469 853 62 0 0 chr11 40138496 40138608 -108644864 - L1PA5 LINE L1 0 6154 6043 10942 116 11 0 chr11 40138608 40139083 -108644389 - THE1B-int LTR MaLR -1111 469 1 1622 159 132 15 chr11 40139083 40139409 -108644063 - THE1B LTR MaLR 0 364 1 1453 251 25 59 chr11 40139444 40139918 -108643554 + MLT1C LTR MaLR 1 458 -9 192 125 0 0 chr11 40140683 40140715 -108642757 + (CA)n Simple_repeat Simple_repeat 2 33 0 246 179 18 0 chr11 40141252 40141308 -108642164 + (TTTA)n Simple_repeat Simple_repeat 1 57 0 21 0 0 0 chr11 40141537 40141558 -108641914 + AT_rich Low_complexity Low_complexity 1 21 0 206 287 20 10 chr11 40141744 40141845 -108641627 + (CATATA)n Simple_repeat Simple_repeat 1 102 0 * 247 188 31 16 chr11 40141799 40141863 -108641609 + (TATATG)n Simple_repeat Simple_repeat 5 69 0 476 221 50 0 chr11 40141874 40142014 -108641458 - L1MB1 LINE L1 -3160 2986 2840 1304 254 25 78 chr11 40142016 40142449 -108641023 + MER77 LTR ERV1 186 595 -10 2252 284 52 42 chr11 40142556 40143378 -108640094 - L1MDa LINE L1 -5542 998 24 822 289 80 34 chr11 40143397 40143598 -108639874 - L1MEc LINE L1 -4331 2065 1875 1348 221 26 13 chr11 40143598 40143638 -108639834 - AluJb SINE Alu 0 312 274 414 0 0 0 chr11 40143638 40143684 -108639788 + (TC)n Simple_repeat Simple_repeat 2 47 0 1348 221 26 13 chr11 40143684 40143951 -108639521 - AluJb SINE Alu -38 274 1 822 289 80 34 chr11 40143951 40144937 -108638535 - L1MEc LINE L1 -4521 1875 783 5206 168 27 67 chr11 40145024 40145726 -108637746 - L1PA15 LINE L1 0 6165 5437 1997 138 3 0 chr11 40145726 40146009 -108637463 - AluSx SINE Alu -25 287 4 5206 168 27 67 chr11 40146009 40147411 -108636061 - L1PA15 LINE L1 -728 5437 4156 535 341 69 26 chr11 40147600 40148022 -108635450 - L1MEc LINE L1 -5918 478 39 897 174 90 0 chr11 40150126 40150281 -108633191 - AluJb SINE Alu -14 298 130 1142 272 80 31 chr11 40151024 40151744 -108631728 - L1ME3A LINE L1 -223 6016 5262 1318 298 53 24 chr11 40152109 40152959 -108630513 - L1ME3A LINE L1 -1305 4910 4036 358 304 114 5 chr11 40153021 40153222 -108630250 - L1ME3A LINE L1 -4101 2295 2073 2748 16 0 0 chr11 40153232 40153549 -108629923 - L1PA3 LINE L1 0 6155 5839 686 330 83 18 chr11 40154016 40154413 -108629059 - L2 LINE L2 -692 2622 2200 5058 142 65 61 chr11 40154954 40156088 -108627384 - Tigger3b DNA MER2_type -6 1225 1 512 328 127 4 chr11 40157903 40158132 -108625340 - MIR SINE MIR -4 258 2 3252 338 99 11 chr11 40158527 40160056 -108623416 + L2 LINE L2 30 1693 -1621 300 260 31 21 chr11 40160066 40160162 -108623310 + L1MC4 LINE L1 6607 6703 -1339 209 186 14 0 chr11 40160175 40160245 -108623227 + (TA)n Simple_repeat Simple_repeat 1 71 0 399 41 0 0 chr11 40160248 40160297 -108623175 + (CA)n Simple_repeat Simple_repeat 2 50 0 1155 316 28 30 chr11 40160302 40160949 -108622523 + L2 LINE L2 2662 3309 -4 393 338 43 30 chr11 40162112 40162414 -108621058 + MLT1I LTR MaLR 98 403 -6 234 281 30 52 chr11 40162439 40162574 -108620898 - L2 LINE L2 -243 3029 2898 258 360 118 22 chr11 40162665 40162937 -108620535 - L2 LINE L2 -463 2851 2554 864 277 42 0 chr11 40163414 40163627 -108619845 - MLT1A1 LTR MaLR 0 365 144 257 0 30 0 chr11 40163631 40163664 -108619808 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 4679 100 12 0 chr11 40163667 40164344 -108619128 - L1PA14 LINE L1 -9 6152 5468 852 205 0 0 chr11 40164344 40164500 -108618972 - MLT1A1 LTR MaLR -209 156 1 180 244 0 0 chr11 40164894 40164935 -108618537 + L2 LINE L2 3273 3313 0 180 0 0 0 chr11 40167861 40167881 -108615591 + (CA)n Simple_repeat Simple_repeat 1 20 0 187 342 26 26 chr11 40168436 40168512 -108614960 - MIR3 SINE MIR -52 156 81 2597 100 11 5 chr11 40169378 40169749 -108613723 + THE1C LTR MaLR 1 373 -2 26 50 0 0 chr11 40171037 40171077 -108612395 + AT_rich Low_complexity Low_complexity 1 40 0 1706 221 11 3 chr11 40171484 40171846 -108611626 - MLT1A1 LTR MaLR 0 365 1 677 291 61 4 chr11 40172813 40173060 -108610412 - MIR SINE MIR 0 262 2 251 282 145 17 chr11 40173381 40173498 -108609974 - LTR33 LTR ERVL -153 368 237 617 259 24 24 chr11 40173524 40173690 -108609782 - LTR33 LTR ERVL -348 173 8 27 73 0 0 chr11 40174373 40174428 -108609044 + AT_rich Low_complexity Low_complexity 1 55 0 321 242 0 130 chr11 40175235 40175396 -108608076 - MIR SINE MIR -37 225 86 2286 52 0 55 chr11 40175995 40176305 -108607167 - AluY SINE Alu -18 293 1 346 189 25 15 chr11 40176331 40176439 -108607033 - MLT1I LTR MaLR -3 406 314 341 259 0 83 chr11 40176468 40176576 -108606896 - MLT1I LTR MaLR -310 99 1 312 216 136 0 chr11 40176576 40176664 -108606808 + MIR SINE MIR 142 241 -21 2158 149 15 0 chr11 40178287 40178629 -108604843 - MER7A DNA MER2_type 0 346 2 2287 128 6 6 chr11 40178790 40179135 -108604337 + THE1B LTR MaLR 3 347 -17 412 258 177 30 chr11 40179187 40179385 -108604087 + MIR SINE MIR 34 260 -2 490 275 25 0 chr11 40179405 40179525 -108603947 - MIR SINE MIR -65 197 75 262 318 139 29 chr11 40179709 40179882 -108603590 + MIR SINE MIR 65 256 -6 21 0 0 0 chr11 40180194 40180215 -108603257 + AT_rich Low_complexity Low_complexity 1 21 0 294 285 73 24 chr11 40180563 40180686 -108602786 - MIR SINE MIR -67 195 67 2648 107 31 13 chr11 40181257 40181642 -108601830 + MLT2A2 LTR ERVL 1 392 -61 198 0 0 0 chr11 40181643 40181665 -108601807 + (TC)n Simple_repeat Simple_repeat 2 23 0 253 90 33 90 chr11 40181665 40181787 -108601685 + (TA)n Simple_repeat Simple_repeat 1 115 0 311 333 0 0 chr11 40181788 40181878 -108601594 - L1MC4 LINE L1 -1339 6703 6614 * 329 258 0 43 chr11 40181812 40181905 -108601567 + L1MC4 LINE L1 6614 6702 -1340 304 333 0 0 chr11 40181904 40181994 -108601478 - L1MC4 LINE L1 -1339 6703 6614 * 297 197 0 0 chr11 40182001 40182062 -108601410 + (TA)n Simple_repeat Simple_repeat 2 62 0 244 210 16 0 chr11 40182065 40182127 -108601345 + L1MCa LINE L1 2006 2068 -4358 267 152 0 0 chr11 40182127 40182173 -108601299 + (TA)n Simple_repeat Simple_repeat 1 46 0 244 264 0 22 chr11 40182177 40182268 -108601204 + L1MC4 LINE L1 6615 6703 -1339 232 311 0 0 chr11 40182232 40182322 -108601150 - L1MC4 LINE L1 -1339 6703 6614 * 195 184 0 0 chr11 40182322 40182360 -108601112 + (TATATG)n Simple_repeat Simple_repeat 6 43 0 323 264 0 22 chr11 40182361 40182452 -108601020 + L1MC4 LINE L1 6615 6703 -1339 456 161 0 0 chr11 40182452 40182533 -108600939 + (TATATG)n Simple_repeat Simple_repeat 1 81 0 322 315 0 0 chr11 40182533 40182622 -108600850 + L1MC4 LINE L1 6615 6703 -1339 220 211 0 0 chr11 40182622 40182660 -108600812 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 312 282 47 0 chr11 40182660 40182745 -108600727 + L1MC4 LINE L1 6614 6702 -1340 255 275 0 29 chr11 40182746 40182886 -108600586 - L1MC4 LINE L1 -1339 6703 6614 231 167 0 37 chr11 40182872 40182926 -108600546 + L1MC4 LINE L1 6652 6703 -1339 * 535 237 7 26 chr11 40182926 40183197 -108600275 + (TATATG)n Simple_repeat Simple_repeat 1 266 0 252 244 0 51 chr11 40183221 40183299 -108600173 + L1MC4 LINE L1 6652 6725 -1317 7176 81 9 26 chr11 40183299 40184316 -108599156 + HERVL LTR ERVL 748 1747 -3907 3811 76 6 0 chr11 40184317 40184816 -108598656 + HERVL LTR ERVL 3038 3539 -2115 602 221 9 0 chr11 40185558 40185671 -108597801 + FLAM_A SINE Alu 2 115 -18 32 26 0 0 chr11 40185729 40185768 -108597704 + AT_rich Low_complexity Low_complexity 1 39 0 273 290 0 0 chr11 40185984 40186046 -108597426 + MIR SINE MIR 82 143 -65 359 177 34 17 chr11 40186063 40186238 -108597234 + (TA)n Simple_repeat Simple_repeat 1 178 0 297 215 21 0 chr11 40186274 40186418 -108597054 + (TA)n Simple_repeat Simple_repeat 2 148 0 197 302 35 12 chr11 40186423 40186509 -108596963 + MIR SINE MIR 162 249 -13 371 298 12 68 chr11 40187306 40187467 -108596005 - MER117 DNA MER1_type 0 197 46 482 280 23 34 chr11 40188092 40188267 -108595205 - MER69A DNA AcHobo -4 173 1 12001 133 10 22 chr11 40190245 40193116 -108590356 + L1PA7 LINE L1 9 2877 -3584 17072 104 4 8 chr11 40193116 40196189 -108587283 + L1PA7 LINE L1 3142 6221 -248 2154 122 7 0 chr11 40196189 40196493 -108586979 - AluSp SINE Alu -7 306 1 17072 104 4 8 chr11 40196493 40196740 -108586732 + L1PA7 LINE L1 6221 6467 -2 1975 155 0 0 chr11 40196958 40197249 -108586223 - AluSx SINE Alu -21 291 1 6074 228 50 22 chr11 40197620 40200526 -108582946 + L1PB3 LINE L1 3 2116 -4746 2393 76 0 0 chr11 40200526 40200840 -108582632 + L1PA8 LINE L1 5859 6172 0 6074 228 50 22 chr11 40200840 40202080 -108581392 + L1PB3 LINE L1 2116 3319 -3543 379 252 0 0 chr11 40202094 40202197 -108581275 + L1PB3 LINE L1 3618 3720 -3142 * 6509 205 20 16 chr11 40202186 40204179 -108579293 + L1PB3 LINE L1 4513 6510 -360 2405 123 0 0 chr11 40204289 40204646 -108578826 + L1PB3 LINE L1 6514 6870 0 373 432 33 8 chr11 40204741 40204984 -108578488 + L1MEc LINE L1 235 483 -5913 26 0 0 0 chr11 40205390 40205416 -108578056 + AT_rich Low_complexity Low_complexity 1 26 0 1584 289 71 49 chr11 40205417 40207331 -108576141 + L1MEc LINE L1 900 2818 -3397 1202 343 97 41 chr11 40207368 40208820 -108574652 + ERVL LTR ERVL 2737 4235 -1250 422 149 27 0 chr11 40209047 40209121 -108574351 - MLT1F LTR MaLR -3 539 464 558 299 27 32 chr11 40209125 40209312 -108574160 - MLT1F LTR MaLR -350 192 7 592 331 34 45 chr11 40209324 40209677 -108573795 + ERVL LTR ERVL 4546 4894 -870 874 261 55 41 chr11 40209682 40210027 -108573445 - L1M4 LINE L1 -1235 4911 4562 314 329 32 51 chr11 40210038 40210186 -108573286 - LTR16A LTR ERVL 0 450 301 2086 137 21 61 chr11 40210186 40210565 -108572907 - THE1B LTR MaLR 0 364 1 10169 118 12 35 chr11 40210565 40212182 -108571290 - THE1B-int LTR MaLR 0 1580 1 2272 132 28 8 chr11 40212182 40212539 -108570933 - THE1B LTR MaLR 0 364 1 314 329 32 51 chr11 40212539 40212604 -108570868 - LTR16A LTR ERVL -146 304 239 187 290 90 40 chr11 40213356 40213456 -108570016 + L2 LINE L2 2947 3051 -221 1031 227 32 0 chr11 40214488 40214708 -108568764 + Charlie4 DNA MER1_type 64 290 -1671 3485 42 2 0 chr11 40214708 40215137 -108568335 - L1PA5 LINE L1 0 6154 5725 1955 106 0 32 chr11 40215138 40215422 -108568050 - AluY SINE Alu -36 275 1 198 378 25 8 chr11 40215833 40215952 -108567520 + L2 LINE L2 1803 1923 -1391 1438 222 43 0 chr11 40216334 40216658 -108566814 + MER58B DNA MER1_type 2 339 -2 240 304 14 0 chr11 40216737 40216806 -108566666 + MIR SINE MIR 87 156 -106 239 266 16 0 chr11 40216965 40217029 -108566443 - MLT1K LTR MaLR -2 586 522 23 33 0 0 chr11 40217031 40217061 -108566411 + AT_rich Low_complexity Low_complexity 1 30 0 224 167 45 15 chr11 40217078 40217144 -108566328 + (TA)n Simple_repeat Simple_repeat 1 68 0 23 0 0 0 chr11 40218006 40218029 -108565443 + AT_rich Low_complexity Low_complexity 1 23 0 1175 76 0 0 chr11 40218208 40218353 -108565119 + AluSq SINE Alu 75 219 -94 25 31 0 0 chr11 40218677 40218709 -108564763 + AT_rich Low_complexity Low_complexity 1 32 0 219 163 20 41 chr11 40219126 40219175 -108564297 + MIR SINE MIR 17 64 -198 432 0 0 0 chr11 40219877 40219925 -108563547 + (GA)n Simple_repeat Simple_repeat 1 48 0 274 286 83 0 chr11 40220691 40220775 -108562697 + MIR SINE MIR 81 171 -91 276 289 33 16 chr11 40221091 40221212 -108562260 + L2 LINE L2 2267 2389 -925 188 418 8 55 chr11 40221432 40221688 -108561784 + L2 LINE L2 2831 3074 -198 285 279 98 8 chr11 40221873 40221995 -108561477 + L2 LINE L2 3181 3313 0 288 356 86 6 chr11 40222961 40223135 -108560337 - MIR SINE MIR -74 188 1 25 31 0 0 chr11 40224968 40225000 -108558472 + AT_rich Low_complexity Low_complexity 1 32 0 216 0 0 0 chr11 40225059 40225083 -108558389 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 904 306 160 16 chr11 40225251 40225935 -108557537 - L2 LINE L2 0 3313 2529 331 333 58 13 chr11 40225938 40226094 -108557378 - MIR SINE MIR -34 228 66 1311 96 62 10 chr11 40226487 40226696 -108556776 - AluYa5 SINE Alu -91 220 1 1179 254 112 65 chr11 40226697 40227432 -108556040 - L1MDa LINE L1 -1904 4740 3972 296 246 0 14 chr11 40227476 40227545 -108555927 + Tigger5 DNA MER2_type 2256 2323 0 429 292 25 5 chr11 40227547 40227749 -108555723 - L1MDa LINE L1 -2688 3956 3751 920 265 43 34 chr11 40227764 40228210 -108555262 - L1MDa LINE L1 -3530 3114 2665 945 228 18 60 chr11 40228339 40228620 -108554852 - LTR4 LTR ERV1 -11 585 317 434 241 150 115 chr11 40228708 40229048 -108554424 - LTR4 LTR ERV1 -239 357 6 347 310 37 36 chr11 40229083 40229437 -108554035 - L1MDa LINE L1 -3936 2708 1179 933 291 80 38 chr11 40229587 40230164 -108553308 - L1M4 LINE L1 -5067 1475 875 23 68 0 0 chr11 40231704 40231748 -108551724 + AT_rich Low_complexity Low_complexity 1 44 0 260 213 0 33 chr11 40231757 40231818 -108551654 + MLT1J LTR MaLR 1 59 -452 561 236 17 11 chr11 40232723 40232897 -108550575 + MER104 DNA MER2_type 2 176 -4 718 165 8 16 chr11 40233041 40233168 -108550304 + FRAM SINE Alu 37 162 -14 402 245 35 120 chr11 40233239 40233337 -108550135 - L2 LINE L2 -590 2724 2650 1961 136 0 3 chr11 40233337 40233623 -108549849 + AluSx SINE Alu 1 285 -27 402 245 35 120 chr11 40233623 40233724 -108549748 - L2 LINE L2 -664 2650 2542 301 222 105 72 chr11 40233754 40233907 -108549565 - L1MC5 LINE L1 -45 7916 7759 2025 90 4 0 chr11 40233942 40234198 -108549274 + AluSp SINE Alu 25 281 -32 24 0 0 0 chr11 40234322 40234346 -108549126 + AT_rich Low_complexity Low_complexity 1 24 0 1078 262 112 44 chr11 40234353 40235087 -108548385 + HAL1b LINE L1 335 1118 -230 23 0 0 0 chr11 40235113 40235136 -108548336 + AT_rich Low_complexity Low_complexity 1 23 0 229 138 17 17 chr11 40235180 40235238 -108548234 + (TA)n Simple_repeat Simple_repeat 1 58 0 30 0 0 0 chr11 40235332 40235362 -108548110 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr11 40235455 40235484 -108547988 + AT_rich Low_complexity Low_complexity 1 29 0 318 278 58 88 chr11 40236089 40236294 -108547178 - MLT1K LTR MaLR -162 426 228 630 318 18 9 chr11 40237212 40237435 -108546037 + MIR SINE MIR 9 233 -29 343 258 45 0 chr11 40238781 40238870 -108544602 + L1MC4 LINE L1 6613 6705 -1337 192 357 14 14 chr11 40239267 40239337 -108544135 + L2 LINE L2 3187 3256 -16 613 242 37 65 chr11 40239510 40239725 -108543747 - L2 LINE L2 0 3313 3105 1102 143 14 90 chr11 40239904 40240127 -108543345 + MER2 DNA MER2_type 1 206 -139 299 299 0 0 chr11 40240187 40240254 -108543218 + MER2 DNA MER2_type 279 345 0 7475 137 38 13 chr11 40241519 40242659 -108540813 + HSMAR2 DNA Mariner 2 1199 -103 4579 61 35 0 chr11 40242659 40243252 -108540220 + L1PA7 LINE L1 5530 6143 -11 7475 137 38 13 chr11 40243252 40243357 -108540115 + HSMAR2 DNA Mariner 1199 1300 -2 778 274 42 45 chr11 40243358 40243694 -108539778 - L1ME1 LINE L1 -25 6141 5807 * 4096 222 28 2 chr11 40243683 40245144 -108538328 - L1MB7 LINE L1 -12 6172 4670 740 234 37 0 chr11 40245145 40245333 -108538139 - L1ME1 LINE L1 -341 5825 5631 1630 157 69 39 chr11 40246795 40247159 -108536313 + THE1C LTR MaLR 1 375 0 1875 61 8 16 chr11 40247499 40247786 -108535686 + AluY SINE Alu 68 352 0 244 134 19 17 chr11 40247838 40247896 -108535576 + MLT1J2 LTR MaLR 362 501 -41 30 27 0 0 chr11 40248162 40248199 -108535273 + AT_rich Low_complexity Low_complexity 1 37 0 546 319 30 33 chr11 40248263 40248533 -108534939 + L2 LINE L2 3045 3313 0 22 0 0 0 chr11 40248601 40248623 -108534849 + AT_rich Low_complexity Low_complexity 1 22 0 513 250 108 0 chr11 40250796 40250944 -108532528 - FRAM SINE Alu -1 165 2 1895 199 18 0 chr11 40253862 40254204 -108529268 + MER7A DNA MER2_type 1 346 0 753 51 0 0 chr11 40254885 40254983 -108528489 + L1P LINE L1 4783 4880 -1266 21 57 0 0 chr11 40255782 40255817 -108527655 + AT_rich Low_complexity Low_complexity 1 35 0 555 115 35 46 chr11 40255824 40255954 -108527518 - L1MA4A LINE L1 -27 6276 6139 500 327 75 5 chr11 40256765 40256964 -108526508 - MIR SINE MIR -45 217 5 23 68 0 0 chr11 40256997 40257041 -108526431 + AT_rich Low_complexity Low_complexity 1 44 0 6871 139 40 120 chr11 40257119 40257539 -108525933 + L1MA2 LINE L1 3576 4028 -2276 1994 169 31 19 chr11 40257539 40257899 -108525573 - THE1B LTR MaLR 0 364 1 11467 105 6 2 chr11 40257899 40259472 -108524000 - THE1B-int LTR MaLR 0 1580 1 910 164 66 0 chr11 40259472 40259624 -108523848 - THE1B LTR MaLR 0 364 203 6871 139 40 120 chr11 40259624 40262038 -108521434 + L1MA2 LINE L1 4025 6304 0 40341 54 4 7 chr11 40262413 40264977 -108518495 - L1PA4 LINE L1 0 6155 3584 5862 77 5 292 chr11 40264977 40266859 -108516613 - SVA Other Other -2 1384 43 234 0 0 0 chr11 40266859 40266885 -108516587 + (GGGAGA)n Simple_repeat Simple_repeat 1 26 0 40341 54 4 7 chr11 40266885 40270257 -108513215 - L1PA4 LINE L1 -2569 3586 237 261 0 0 0 chr11 40270809 40270838 -108512634 + (TG)n Simple_repeat Simple_repeat 2 30 0 1022 202 0 5 chr11 40271455 40271653 -108511819 + MER3 DNA MER1_type 13 209 0 25 31 0 0 chr11 40271962 40271994 -108511478 + AT_rich Low_complexity Low_complexity 1 32 0 230 208 125 83 chr11 40272269 40272389 -108511083 - MLT1H LTR MaLR -314 235 111 2076 99 3 7 chr11 40272772 40273075 -108510397 + L1PA8 LINE L1 5866 6167 -5 337 304 96 50 chr11 40274430 40274670 -108508802 - L2 LINE L2 -469 2845 2595 225 0 0 0 chr11 40275403 40275428 -108508044 + (CA)n Simple_repeat Simple_repeat 2 26 0 1449 209 47 12 chr11 40276558 40276897 -108506575 - MLT1A1 LTR MaLR -4 361 11 923 277 105 49 chr11 40276924 40277333 -108506139 + MLT1H LTR MaLR 1 485 -64 1713 167 31 3 chr11 40277333 40277620 -108505852 - AluJb SINE Alu -17 295 1 923 277 105 49 chr11 40277620 40277687 -108505785 + MLT1H LTR MaLR 485 547 -2 1493 129 0 0 chr11 40277962 40278179 -108505293 - AluSg/x SINE Alu 0 312 96 242 331 70 32 chr11 40278385 40278542 -108504930 + MIR SINE MIR 10 172 -90 3142 29 5 0 chr11 40278551 40278927 -108504545 + L1PA4 LINE L1 5778 6155 0 566 224 5 107 chr11 40278963 40279041 -108504431 - MIR SINE MIR -4 258 174 1974 114 0 4 chr11 40279041 40279391 -108504081 - AluSg SINE Alu 0 349 1 566 224 5 107 chr11 40279391 40279507 -108503965 - MIR SINE MIR -88 174 83 333 271 0 0 chr11 40279509 40279579 -108503893 - Zaphod DNA AcHobo -2 4029 3960 224 57 0 29 chr11 40279579 40279614 -108503858 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 291 308 26 0 chr11 40280471 40280549 -108502923 - Zaphod DNA AcHobo -3951 80 1 256 375 0 0 chr11 40280563 40280635 -108502837 - MIR SINE MIR -188 74 3 384 230 40 20 chr11 40281819 40281919 -108501553 - MIR SINE MIR 0 262 161 21 0 0 0 chr11 40282275 40282296 -108501176 + AT_rich Low_complexity Low_complexity 1 21 0 236 212 8 83 chr11 40282425 40282557 -108500915 + (TATAA)n Simple_repeat Simple_repeat 4 125 0 230 272 99 12 chr11 40283692 40283773 -108499699 - L2 LINE L2 0 3313 3226 370 318 47 7 chr11 40284185 40284333 -108499139 + MIR SINE MIR 70 223 -39 183 250 13 105 chr11 40286313 40286389 -108497083 - MER5A DNA MER1_type 0 189 121 239 326 130 11 chr11 40287997 40288181 -108495291 - L2 LINE L2 -9 3304 3099 326 321 74 19 chr11 40288463 40288678 -108494794 - L2 LINE L2 -557 2757 2531 1249 249 55 53 chr11 40288833 40289512 -108493960 - L1ME2 LINE L1 -47 6117 5409 625 279 31 25 chr11 40289628 40289950 -108493522 - L1ME2 LINE L1 -917 5229 4906 283 263 37 141 chr11 40290511 40290781 -108492691 - L2 LINE L2 -2770 544 303 222 229 42 104 chr11 40290825 40290921 -108492551 + MIR SINE MIR 94 183 -79 201 156 0 0 chr11 40291064 40291096 -108492376 + (TATG)n Simple_repeat Simple_repeat 4 35 0 478 108 12 48 chr11 40291619 40291702 -108491770 + MADE1 DNA Mariner 1 80 0 1610 221 40 80 chr11 40291869 40292195 -108491277 + MLT1D LTR MaLR 1 300 -205 2164 92 31 3 chr11 40292195 40292488 -108490984 + AluSc SINE Alu 8 308 -1 1610 221 40 80 chr11 40292488 40292687 -108490785 + MLT1D LTR MaLR 300 505 0 1340 209 72 17 chr11 40292987 40293332 -108490140 + MLT1A1 LTR MaLR 1 364 -1 681 188 113 75 chr11 40293337 40293550 -108489922 + MLT2B1 LTR ERVL 176 396 -124 1824 145 95 0 chr11 40293630 40293913 -108489559 + AluSg SINE Alu 1 310 0 277 215 15 0 chr11 40295010 40295075 -108488397 - MER2 DNA MER2_type -136 209 144 2666 79 6 0 chr11 40295236 40295589 -108487883 + THE1A LTR MaLR 1 355 0 1513 184 29 46 chr11 40296275 40296623 -108486849 + MER2 DNA MER2_type 2 343 -1 24 32 0 0 chr11 40296874 40296905 -108486567 + AT_rich Low_complexity Low_complexity 1 31 0 861 55 0 0 chr11 40296905 40297014 -108486458 - L1PA5 LINE L1 -16 6138 6030 866 213 0 48 chr11 40297035 40297223 -108486249 - MER58A DNA MER1_type -39 185 7 272 276 199 0 chr11 40298490 40298611 -108484861 - MIR3 SINE MIR -12 196 57 26 0 0 0 chr11 40299038 40299064 -108484408 + AT_rich Low_complexity Low_complexity 1 26 0 2313 92 0 0 chr11 40299374 40299668 -108483804 - AluY SINE Alu -3 308 15 240 287 58 35 chr11 40299992 40300079 -108483393 + L2 LINE L2 3225 3313 0 845 177 11 19 chr11 40300173 40300359 -108483113 - L1MA1 LINE L1 -464 5838 5657 7704 20 2 0 chr11 40300360 40301529 -108481943 - L1PA2 LINE L1 0 6155 4986 7074 24 0 1 chr11 40301529 40302366 -108481106 + L1PA2 LINE L1 4148 4983 -1163 2288 195 4 39 chr11 40302376 40302914 -108480558 + L1MA10 LINE L1 5815 6333 -1 287 294 228 0 chr11 40303084 40303264 -108480208 + MLT1K LTR MaLR 366 586 -2 24 32 0 0 chr11 40303494 40303525 -108479947 + AT_rich Low_complexity Low_complexity 1 31 0 459 133 51 0 chr11 40305343 40305441 -108478031 + GA-rich Low_complexity Low_complexity 3 105 0 360 0 0 0 chr11 40305458 40305498 -108477974 + (CAGGG)n Simple_repeat Simple_repeat 2 41 0 561 259 62 48 chr11 40306045 40306354 -108477118 + L1MC4a LINE L1 5655 5967 -1841 220 222 86 0 chr11 40306372 40306453 -108477019 + (TAAAG)n Simple_repeat Simple_repeat 5 92 0 334 274 57 16 chr11 40306776 40306900 -108476572 + L1MC5 LINE L1 7805 7933 -28 776 250 20 5 chr11 40307260 40307464 -108476008 - MER3 DNA MER1_type -1 208 2 1976 107 7 4 chr11 40307548 40307862 -108475610 - AluSq SINE Alu 0 315 1 225 236 14 14 chr11 40308463 40308535 -108474937 + (TA)n Simple_repeat Simple_repeat 2 73 0 243 0 0 0 chr11 40308535 40308562 -108474910 + (CA)n Simple_repeat Simple_repeat 2 28 0 1432 308 65 25 chr11 40308568 40309077 -108474395 + MLT1E2 LTR MaLR 89 617 -9 235 297 110 8 chr11 40309653 40309771 -108473701 - MIR SINE MIR -2 260 131 260 316 58 4 chr11 40310894 40311005 -108472467 - MIR SINE MIR -89 119 2 263 322 167 23 chr11 40311551 40311725 -108471747 + MIR SINE MIR 56 254 -8 644 348 16 4 chr11 40312623 40312873 -108470599 + MIR SINE MIR 7 259 -3 275 273 13 0 chr11 40313094 40313171 -108470301 + MER117 DNA MER1_type 71 148 -49 4794 154 43 19 chr11 40313549 40314433 -108469039 + MER4D LTR ERV1 1 664 0 1348 239 73 23 chr11 40314462 40314898 -108468574 - LTR38 LTR ERV1 -12 544 87 21 0 0 0 chr11 40314926 40314947 -108468525 + AT_rich Low_complexity Low_complexity 1 21 0 595 115 0 0 chr11 40315246 40315333 -108468139 + MER39 LTR ERV1 1 87 -620 305 259 96 7 chr11 40315336 40315471 -108468001 + L1MA5A LINE L1 6147 6293 -4 630 0 47 0 chr11 40315889 40315974 -108467498 + (TCTA)n Simple_repeat Simple_repeat 2 90 0 200 332 141 48 chr11 40316738 40317136 -108466336 + L2 LINE L2 1224 1658 -1656 246 296 14 0 chr11 40317209 40317280 -108466192 - MIR SINE MIR -93 169 98 2416 134 3 6 chr11 40318040 40318405 -108465067 - THE1B LTR MaLR 0 364 1 1194 292 76 54 chr11 40318649 40319225 -108464247 + MLT1G LTR MaLR 7 590 0 23 33 0 0 chr11 40320438 40320468 -108463004 + AT_rich Low_complexity Low_complexity 1 30 0 31 44 0 0 chr11 40320525 40320570 -108462902 + AT_rich Low_complexity Low_complexity 1 45 0 306 278 197 50 chr11 40320681 40320940 -108462532 + L2 LINE L2 1827 2123 -1191 183 80 0 0 chr11 40320948 40320973 -108462499 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 679 325 85 10 chr11 40321135 40321430 -108462042 + L2 LINE L2 2640 2956 -358 26 30 0 0 chr11 40321882 40321915 -108461557 + AT_rich Low_complexity Low_complexity 1 33 0 559 297 108 9 chr11 40322282 40322494 -108460978 - MIR SINE MIR -1 261 29 23 0 0 0 chr11 40323202 40323225 -108460247 + AT_rich Low_complexity Low_complexity 1 23 0 279 0 0 0 chr11 40323534 40323569 -108459903 + (CA)n Simple_repeat Simple_repeat 1 66 0 279 0 0 0 chr11 40323569 40323600 -108459872 + (CA)n Simple_repeat Simple_repeat 2 32 0 2560 64 0 0 chr11 40323719 40324030 -108459442 + AluY SINE Alu 1 311 0 239 354 30 0 chr11 40324148 40324247 -108459225 + L1ME LINE L1 12 113 -5957 279 0 0 0 chr11 40324276 40324307 -108459165 + (TTA)n Simple_repeat Simple_repeat 3 33 0 4269 34 2 0 chr11 40324307 40324815 -108458657 - L1PA3 LINE L1 -18 6137 5629 8294 168 20 22 chr11 40325017 40326916 -108456556 - L1MA6 LINE L1 -697 5603 3706 3871 154 12 6 chr11 40326917 40327600 -108455872 + L1MA6 LINE L1 5614 6300 0 303 286 62 75 chr11 40327725 40328275 -108455197 - L1MEd LINE L1 -4931 1188 646 1026 216 147 63 chr11 40330535 40330854 -108452618 + L1M2c LINE L1 7 352 -6437 416 279 7 3 chr11 40330860 40330999 -108452473 + MER5A DNA MER1_type 6 187 -2 884 295 105 8 chr11 40331188 40331588 -108451884 - L1ME3 LINE L1 -67 6375 5937 696 246 36 0 chr11 40331605 40331772 -108451700 - LTR16C LTR ERVL 0 491 319 717 280 46 39 chr11 40332058 40332365 -108451107 - L1ME3 LINE L1 -512 5930 5622 267 299 33 56 chr11 40332363 40332467 -108451005 - L1ME3 LINE L1 -1091 5335 5237 * 1755 162 32 0 chr11 40332467 40332751 -108450721 + AluSx SINE Alu 1 293 -19 267 299 33 56 chr11 40332751 40332860 -108450612 - L1ME3 LINE L1 -1189 5237 5127 229 308 70 19 chr11 40332911 40333067 -108450405 - L1ME3 LINE L1 -5021 1405 1242 514 276 16 0 chr11 40333327 40333450 -108450022 + FLAM_A SINE Alu 1 125 -8 1719 128 81 36 chr11 40333454 40333813 -108449659 - THE1C LTR MaLR 0 375 1 4642 189 14 12 chr11 40333908 40334962 -108448510 + L1MB2 LINE L1 5112 6169 -2 1503 286 27 33 chr11 40334988 40335471 -108448001 - MLT1F LTR MaLR -62 480 1 26 30 0 0 chr11 40336326 40336359 -108447113 + AT_rich Low_complexity Low_complexity 1 33 0 28 48 0 0 chr11 40336373 40336415 -108447057 + AT_rich Low_complexity Low_complexity 1 42 0 237 299 52 10 chr11 40336415 40336512 -108446960 - MIR SINE MIR -14 248 148 357 331 32 0 chr11 40336744 40336898 -108446574 - MLT1J1 LTR MaLR -227 219 61 271 214 57 0 chr11 40336935 40337005 -108446467 + MLT1J LTR MaLR 1 74 -437 409 155 52 21 chr11 40337008 40337105 -108446367 - MER50 LTR ERV1 -130 604 505 463 237 10 0 chr11 40337147 40337244 -108446228 + MLT1J LTR MaLR 70 167 -344 643 275 77 10 chr11 40337341 40337548 -108445924 + MLT1J LTR MaLR 291 511 0 482 323 72 24 chr11 40338450 40338617 -108444855 + MIR3 SINE MIR 17 191 -17 38 75 0 0 chr11 40338894 40338974 -108444498 + AT_rich Low_complexity Low_complexity 1 80 0 497 198 17 35 chr11 40339678 40339794 -108443678 + MER20 DNA MER1_type 104 217 -2 26 30 0 0 chr11 40339807 40339840 -108443632 + AT_rich Low_complexity Low_complexity 1 33 0 234 0 0 0 chr11 40340253 40340279 -108443193 + (ATTG)n Simple_repeat Simple_repeat 3 28 0 1988 91 7 4 chr11 40340279 40340554 -108442918 - AluY SINE Alu -33 278 3 1043 244 4 15 chr11 40340571 40340833 -108442639 - L1MB8 LINE L1 -41 6137 5879 2447 171 45 6 chr11 40390970 40391484 -108391988 + L1MA9 LINE L1 5776 6309 -3 24 53 0 0 chr11 40391516 40391554 -108391918 + AT_rich Low_complexity Low_complexity 1 38 0 804 235 11 11 chr11 40391688 40391875 -108391597 - MER2 DNA MER2_type -1 344 158 2852 187 80 87 chr11 40391876 40392004 -108391468 + MER21A LTR ERV1 3 130 -801 5661 34 0 0 chr11 40392004 40392679 -108390793 - L1PA4 LINE L1 -6 6149 5475 2951 37 0 0 chr11 40392679 40393055 -108390417 - L1PA3 LINE L1 0 6155 5794 2852 187 80 87 chr11 40393055 40393860 -108389612 + MER21A LTR ERV1 128 931 0 775 184 95 0 chr11 40393860 40394006 -108389466 - MER2 DNA MER2_type -182 163 4 22 35 0 0 chr11 40394035 40394064 -108389408 + AT_rich Low_complexity Low_complexity 1 29 0 28 48 0 0 chr11 40394444 40394486 -108388986 + AT_rich Low_complexity Low_complexity 1 42 0 333 185 0 0 chr11 40394642 40394707 -108388765 + GA-rich Low_complexity Low_complexity 3 67 0 33 25 0 0 chr11 40394754 40394794 -108388678 + AT_rich Low_complexity Low_complexity 1 40 0 25 65 0 0 chr11 40394820 40394866 -108388606 + AT_rich Low_complexity Low_complexity 1 46 0 332 189 71 18 chr11 40394867 40395036 -108388436 + (TTATA)n Simple_repeat Simple_repeat 1 178 0 33 66 0 0 chr11 40395049 40395110 -108388362 + AT_rich Low_complexity Low_complexity 1 61 0 431 185 144 30 chr11 40395756 40395916 -108387556 - MIR SINE MIR -26 236 55 2341 191 63 15 chr11 40396015 40396477 -108386995 + LTR42 LTR ERVL 1 484 -11 272 204 19 0 chr11 40398164 40398218 -108385254 + L1ME4a LINE L1 5855 5909 -212 1016 267 209 25 chr11 40398218 40398663 -108384809 + MLT1G LTR MaLR 1 527 -63 375 244 78 22 chr11 40398678 40398858 -108384614 - MER63 DNA MER1_type -2 1060 871 347 89 18 0 chr11 40398938 40398994 -108384478 + (TA)n Simple_repeat Simple_repeat 2 58 0 1775 112 56 7 chr11 40399845 40400157 -108383315 + AluSx SINE Alu 3 327 0 38 51 0 0 chr11 40400318 40400377 -108383095 + AT_rich Low_complexity Low_complexity 1 59 0 22 25 0 25 chr11 40400496 40400515 -108382957 + AT_rich Low_complexity Low_complexity 1 19 -20 2045 134 0 0 chr11 40400515 40400799 -108382673 + AluSc SINE Alu 1 284 -25 22 25 0 25 chr11 40400799 40400819 -108382653 + AT_rich Low_complexity Low_complexity 19 39 0 4681 151 6 32 chr11 40401303 40402143 -108381329 - L1MC1 LINE L1 -2 6331 5514 216 170 0 0 chr11 40402220 40402273 -108381199 + A-rich Low_complexity Low_complexity 1 53 0 381 314 94 11 chr11 40402329 40402520 -108380952 + L1MEc LINE L1 540 746 -5650 1284 116 63 0 chr11 40402522 40402711 -108380761 + AluSp SINE Alu 2 202 -111 3679 148 53 26 chr11 40402760 40403852 -108379620 - MER11A LTR ERVK 0 1236 1 464 264 78 48 chr11 40403852 40404223 -108379249 + L1MEc LINE L1 853 1234 -5162 52 17 0 0 chr11 40404284 40404343 -108379129 + AT_rich Low_complexity Low_complexity 1 59 0 2001 142 0 7 chr11 40404453 40404755 -108378717 + AluSq SINE Alu 1 300 -13 3642 279 51 31 chr11 40404823 40406582 -108376890 + L1MEc LINE L1 2383 4176 -2039 1671 272 60 7 chr11 40406815 40407544 -108375928 - L1MCb LINE L1 -2906 3658 2891 1310 251 39 31 chr11 40407569 40408054 -108375418 - L1M4 LINE L1 -897 5747 5259 2310 267 57 37 chr11 40408083 40409189 -108374283 - L1M4 LINE L1 -2191 4453 3326 1776 164 146 11 chr11 40409189 40409566 -108373906 - MSTA LTR MaLR 0 428 1 8798 164 7 35 chr11 40409566 40411189 -108372283 - MSTA-int LTR MaLR 0 1580 3 1949 160 128 8 chr11 40411191 40411573 -108371899 - MSTA LTR MaLR 0 428 1 1238 274 82 59 chr11 40411589 40411723 -108371749 - L1M4 LINE L1 -5572 970 841 207 0 0 0 chr11 40411723 40411746 -108371726 + (CAAAC)n Simple_repeat Simple_repeat 1 23 0 1238 274 82 59 chr11 40411746 40412206 -108371266 - L1M4 LINE L1 -5701 841 362 300 291 60 26 chr11 40412208 40412325 -108371147 - L1M4 LINE L1 -6269 273 153 2057 227 85 68 chr11 40412402 40413407 -108370065 - L1MCb LINE L1 -4761 1803 757 2691 270 67 22 chr11 40413420 40413884 -108369588 - L1MCb LINE L1 -5012 1033 591 3774 150 4 64 chr11 40413884 40414619 -108368853 - LTR8 LTR ERV1 0 691 1 2691 270 67 22 chr11 40414619 40415109 -108368363 - L1MCb LINE L1 -5454 591 36 355 339 77 46 chr11 40415220 40415377 -108368095 + L1ME2 LINE L1 2692 2843 -3303 2235 95 7 3 chr11 40415377 40415683 -108367789 - AluSq SINE Alu -6 307 1 355 339 77 46 chr11 40415683 40415876 -108367596 + L1ME2 LINE L1 2843 3053 -3093 229 261 17 35 chr11 40415971 40416086 -108367386 + L1ME2 LINE L1 5275 5387 -2421 28 71 0 0 chr11 40417191 40417247 -108366225 + AT_rich Low_complexity Low_complexity 1 56 0 367 333 51 1 chr11 40417472 40417621 -108365851 - MIR SINE MIR -68 140 39 28 0 0 0 chr11 40418152 40418180 -108365292 + AT_rich Low_complexity Low_complexity 1 28 0 7389 25 1 0 chr11 40418294 40419755 -108363717 - L1PA3 LINE L1 -46 6109 4648 401 328 41 31 chr11 40419748 40419943 -108363529 + L1MEc LINE L1 116 312 -6084 * 562 282 54 37 chr11 40420029 40420397 -108363075 + L1ME2 LINE L1 5657 6027 -137 271 299 39 19 chr11 40420403 40420557 -108362915 + L1MA10 LINE L1 6174 6330 -4 1035 191 164 43 chr11 40420654 40420978 -108362494 + MLT1A1 LTR MaLR 1 363 -2 22 0 0 0 chr11 40421810 40421832 -108361640 + AT_rich Low_complexity Low_complexity 1 22 0 319 321 36 29 chr11 40421982 40422122 -108361350 + MIR SINE MIR 48 188 -74 293 283 215 34 chr11 40422257 40422434 -108361038 + L2 LINE L2 2827 3035 -278 1403 214 38 13 chr11 40423265 40423578 -108359894 + MER58B DNA MER1_type 3 323 -18 812 169 46 72 chr11 40423953 40424148 -108359324 + MLT1A1 LTR MaLR 2 191 -174 826 251 1 11 chr11 40425578 40425787 -108357685 - MLT1A2 LTR MaLR 0 386 184 1845 137 52 27 chr11 40425879 40426208 -108357264 - THE1B LTR MaLR -25 339 3 266 77 0 0 chr11 40426209 40426248 -108357224 - THE1B-int LTR MaLR 0 1580 1542 * 8798 115 7 1 chr11 40426231 40427467 -108356005 - THE1B-int LTR MaLR -336 1244 1 2169 127 48 22 chr11 40427467 40427822 -108355650 - THE1B LTR MaLR 0 364 1 553 143 10 41 chr11 40427949 40428047 -108355425 - MLT1A2 LTR MaLR -276 98 4 802 221 15 56 chr11 40428107 40428302 -108355170 + MER58A DNA MER1_type 38 224 0 757 228 5 46 chr11 40428361 40428558 -108354914 - MER5A DNA MER1_type 0 189 1 385 307 65 7 chr11 40428868 40429021 -108354451 - MIR SINE MIR -95 167 6 208 263 20 101 chr11 40429315 40429414 -108354058 + L3 LINE CR1 572 662 -915 345 364 15 39 chr11 40429460 40429666 -108353806 - MIR SINE MIR -42 220 20 252 122 0 0 chr11 40430458 40430499 -108352973 + (TG)n Simple_repeat Simple_repeat 2 42 0 835 287 21 4 chr11 40431051 40431288 -108352184 - MIR SINE MIR -10 252 12 491 278 31 6 chr11 40431571 40431733 -108351739 - Charlie8 DNA MER1_type -1954 463 298 189 0 0 0 chr11 40432281 40432302 -108351170 + (TA)n Simple_repeat Simple_repeat 1 21 0 272 336 187 8 chr11 40432319 40432453 -108351019 - MLT1I LTR MaLR -66 343 186 22 0 0 0 chr11 40434342 40434364 -108349108 + AT_rich Low_complexity Low_complexity 1 22 0 204 175 25 0 chr11 40434543 40434583 -108348889 + (TA)n Simple_repeat Simple_repeat 2 42 0 296 316 37 0 chr11 40434798 40434934 -108348538 + L1MC4 LINE L1 6870 7010 -1032 200 333 52 31 chr11 40435465 40435561 -108347911 - MIR SINE MIR -142 120 23 491 45 0 15 chr11 40436510 40436577 -108346895 + (TTCC)n Simple_repeat Simple_repeat 2 67 0 1791 161 7 3 chr11 40436577 40436882 -108346590 - AluSg SINE Alu -2 308 3 217 205 0 0 chr11 40436979 40437018 -108346454 + (TG)n Simple_repeat Simple_repeat 2 40 0 853 243 11 107 chr11 40437407 40437687 -108345785 - MER21B LTR ERV1 -610 253 1 555 327 67 0 chr11 40439054 40439262 -108344210 + MIR SINE MIR 39 260 -2 633 303 60 23 chr11 40439286 40439504 -108343968 - MIR SINE MIR -27 235 10 11743 206 22 39 chr11 40441591 40445469 -108338003 + L1PA16 LINE L1 1197 5137 -1732 243 0 0 0 chr11 40445469 40445496 -108337976 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 1778 61 0 0 chr11 40445496 40445725 -108337747 - L1PA8 LINE L1 -11 6161 5933 11743 206 22 39 chr11 40445725 40446611 -108336861 + L1PA16 LINE L1 5136 6035 -834 2175 60 3 50 chr11 40446611 40446911 -108336561 + AluY SINE Alu 5 290 -21 11743 206 22 39 chr11 40446911 40447732 -108335740 + L1PA16 LINE L1 6035 6682 -187 1934 120 3 7 chr11 40447732 40448015 -108335457 + AluSx SINE Alu 1 282 -30 11743 206 22 39 chr11 40448015 40448200 -108335272 + L1PA16 LINE L1 6682 6869 0 30 0 0 0 chr11 40450826 40450856 -108332616 + AT_rich Low_complexity Low_complexity 1 30 0 27 62 0 0 chr11 40451022 40451070 -108332402 + AT_rich Low_complexity Low_complexity 1 48 0 344 259 19 37 chr11 40451236 40451344 -108332128 - L2 LINE L2 0 3313 3208 609 308 72 42 chr11 40451484 40451574 -108331898 - LTR40a LTR ERVL -2 517 431 1641 121 114 11 chr11 40451574 40451854 -108331618 + AluSg1 SINE Alu 1 309 0 609 308 72 42 chr11 40451854 40452149 -108331323 - LTR40a LTR ERVL -88 431 120 408 286 101 48 chr11 40452173 40452362 -108331110 - LTR40a LTR ERVL -320 199 1 204 97 0 0 chr11 40453194 40453225 -108330247 + (TAAAA)n Simple_repeat Simple_repeat 5 35 0 203 276 0 0 chr11 40453534 40453592 -108329880 + (TA)n Simple_repeat Simple_repeat 2 59 0 204 97 0 0 chr11 40453606 40453637 -108329835 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 432 0 0 0 chr11 40453636 40453684 -108329788 + (TA)n Simple_repeat Simple_repeat 1 48 0 22 0 0 0 chr11 40454766 40454788 -108328684 + AT_rich Low_complexity Low_complexity 1 22 0 444 325 76 19 chr11 40455436 40455593 -108327879 - MIR3 SINE MIR -10 198 33 27 87 0 0 chr11 40456419 40456488 -108326984 + AT_rich Low_complexity Low_complexity 1 69 0 23 0 0 0 chr11 40456664 40456687 -108326785 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr11 40457708 40457732 -108325740 + AT_rich Low_complexity Low_complexity 1 24 0 1379 132 36 0 chr11 40457739 40457989 -108325483 - L1MA7 LINE L1 -5 6286 6028 251 200 133 92 chr11 40458109 40458229 -108325243 - L2 LINE L2 0 3313 3189 246 327 45 9 chr11 40458315 40458425 -108325047 + MIR SINE MIR 47 160 -102 22 70 0 0 chr11 40460030 40460073 -108323399 + AT_rich Low_complexity Low_complexity 1 43 0 315 373 46 0 chr11 40460130 40460283 -108323189 - MIR SINE MIR -49 213 54 284 309 49 3 chr11 40460875 40461039 -108322433 + MIR SINE MIR 13 228 -34 484 42 28 0 chr11 40462167 40462238 -108321234 + (TC)n Simple_repeat Simple_repeat 2 74 0 396 0 0 0 chr11 40462329 40462373 -108321099 + (TA)n Simple_repeat Simple_repeat 1 44 0 236 279 51 13 chr11 40462436 40462515 -108320957 + MLT1J1 LTR MaLR 80 161 -285 675 279 89 42 chr11 40463884 40464264 -108319208 + L1ME3A LINE L1 5725 6122 -48 23 0 0 0 chr11 40464735 40464758 -108318714 + AT_rich Low_complexity Low_complexity 1 23 0 396 259 6 51 chr11 40465137 40465295 -108318177 + L1MB7 LINE L1 581 731 -5549 2191 266 39 52 chr11 40465302 40466180 -108317292 + L1MB7 LINE L1 1059 1947 -4435 1407 219 0 24 chr11 40466180 40466499 -108316973 + AluJb SINE Alu 2 313 0 2191 266 39 52 chr11 40466499 40467554 -108315918 + L1MB7 LINE L1 1947 3043 -3339 1653 254 30 10 chr11 40467630 40468260 -108315212 + L1MB7 LINE L1 5158 5803 -743 1506 222 39 10 chr11 40468261 40468667 -108314805 + L1MB7 LINE L1 6003 6420 0 1949 161 3 0 chr11 40471114 40471424 -108312048 - AluSx SINE Alu -1 311 1 273 298 62 67 chr11 40472103 40472281 -108311191 - L2 LINE L2 -2474 840 664 1627 282 77 39 chr11 40472327 40472898 -108310574 + MLT1E LTR MaLR 1 593 0 198 71 0 0 chr11 40473151 40473179 -108310293 + (CAT)n Simple_repeat Simple_repeat 3 30 0 207 189 0 0 chr11 40473219 40473256 -108310216 + MIR SINE MIR 190 226 -36 1892 239 69 31 chr11 40475750 40476228 -108307244 + MLT1D LTR MaLR 10 505 0 22 70 0 0 chr11 40476453 40476496 -108306976 + AT_rich Low_complexity Low_complexity 1 43 0 293 309 186 21 chr11 40476753 40476941 -108306531 + MIR SINE MIR 12 230 -32 23 86 0 0 chr11 40477394 40477452 -108306020 + AT_rich Low_complexity Low_complexity 1 58 0 1780 115 0 0 chr11 40477629 40477863 -108305609 + AluSc SINE Alu 1 234 -75 2207 149 25 3 chr11 40478046 40478402 -108305070 + THE1B LTR MaLR 1 364 0 2160 140 21 9 chr11 40478614 40479073 -108304399 + L1M1 LINE L1 5152 5616 -687 1851 134 75 10 chr11 40479074 40479448 -108304024 - LTR7 LTR ERV1 0 450 1 3125 129 35 0 chr11 40479448 40479958 -108303514 - HERVH LTR ERV1 0 7713 7186 4980 158 6 4 chr11 40480068 40481025 -108302447 - HERVH LTR ERV1 -1805 5286 3873 1048 179 15 0 chr11 40481025 40481221 -108302251 - HERVH LTR ERV1 -4375 3338 3140 * 4324 139 2 21 chr11 40481200 40482412 -108301060 - HERVH LTR ERV1 -4718 2995 1711 2719 145 43 8 chr11 40482407 40483237 -108300235 - HERVH LTR ERV1 -6558 1155 1 * 1807 137 19 7 chr11 40483237 40483549 -108299923 - LTR7 LTR ERV1 0 450 85 3318 138 81 5 chr11 40483550 40484190 -108299282 + L1MA4A LINE L1 5613 6301 -2 180 135 0 0 chr11 40484266 40484303 -108299169 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 1997 124 0 13 chr11 40484399 40484698 -108298774 + AluSc SINE Alu 3 297 -12 1387 244 23 47 chr11 40485070 40485542 -108297930 + MLT1C LTR MaLR 7 467 0 291 162 0 95 chr11 40485867 40485941 -108297531 + MSTC LTR MaLR 1 67 -361 1326 178 232 11 chr11 40485953 40486302 -108297170 + MSTB LTR MaLR 1 426 0 8950 144 7 42 chr11 40486304 40487938 -108295534 + MSTA-int LTR MaLR 3 1580 0 1504 182 190 0 chr11 40487938 40488295 -108295177 + MSTA LTR MaLR 3 428 0 239 210 12 123 chr11 40489252 40489333 -108294139 - Tigger5 DNA MER2_type -1 2322 2251 620 271 105 48 chr11 40489901 40490273 -108293199 - L2 LINE L2 -5 3308 2916 309 346 11 43 chr11 40490328 40490513 -108292959 + MER5A DNA MER1_type 11 189 0 1258 296 74 40 chr11 40491607 40492178 -108291294 + MLT1E LTR MaLR 4 593 0 187 356 49 91 chr11 40492578 40492963 -108290509 + L2 LINE L2 2903 3271 -1 281 269 0 15 chr11 40493024 40493091 -108290381 + MIR SINE MIR 81 146 -116 799 315 52 29 chr11 40493138 40493484 -108289988 - L2 LINE L2 -9 3304 2951 22 35 0 0 chr11 40493934 40493963 -108289509 + AT_rich Low_complexity Low_complexity 1 29 0 4277 182 50 12 chr11 40495333 40496465 -108287007 - L1MA6 LINE L1 -3 7716 6496 6947 207 24 11 chr11 40496736 40498582 -108284890 - L1MA6 LINE L1 -1053 6512 4636 967 206 79 82 chr11 40498672 40499247 -108284225 - L1MA6 LINE L1 -3664 3901 3313 231 339 59 47 chr11 40499586 40499822 -108283650 - MIR SINE MIR -18 244 6 220 359 99 8 chr11 40500112 40500243 -108283229 - L2 LINE L2 -4 3309 3167 22 35 0 0 chr11 40500265 40500294 -108283178 + AT_rich Low_complexity Low_complexity 1 29 0 1382 164 89 89 chr11 40501645 40502047 -108281425 + MSTB1 LTR MaLR 39 432 0 390 247 44 70 chr11 40502076 40502303 -108281169 - L1ME1 LINE L1 -201 6034 5814 1982 191 16 3 chr11 40502305 40502677 -108280795 - MLT1B LTR MaLR 0 390 14 947 242 22 9 chr11 40502739 40502962 -108280510 - L1ME1 LINE L1 -460 5773 5548 246 32 0 0 chr11 40502976 40503007 -108280465 + (TG)n Simple_repeat Simple_repeat 1 31 0 201 74 0 0 chr11 40503007 40503034 -108280438 + (GA)n Simple_repeat Simple_repeat 2 28 0 1414 201 75 3 chr11 40503083 40503377 -108280095 + MER7A DNA MER2_type 8 320 -26 1065 130 5 0 chr11 40503518 40503703 -108279769 - L1MA6 LINE L1 0 6300 6115 4076 167 21 49 chr11 40503806 40505034 -108278438 - L1MA6 LINE L1 -205 6095 4907 3324 157 22 18 chr11 40505107 40505774 -108277698 - L1MC1 LINE L1 0 6333 5664 1410 253 46 34 chr11 40505788 40506349 -108277123 - L1ME1 LINE L1 -841 5374 4807 660 160 37 9 chr11 40506548 40506725 -108276747 - L1P1 LINE L1 -678 5477 5295 955 261 138 35 chr11 40506764 40507573 -108275899 - L1ME1 LINE L1 -3875 2521 1629 3571 223 37 22 chr11 40507596 40508173 -108275299 - L1MB3 LINE L1 -9 6174 5584 4947 24 3 0 chr11 40508173 40508753 -108274719 + L1PA4 LINE L1 5574 6155 0 3571 223 37 22 chr11 40508753 40509228 -108274244 - L1MB3 LINE L1 -599 5584 5118 255 297 31 8 chr11 40509222 40509368 -108274104 - L1MDa LINE L1 -4614 2951 2774 * 751 168 0 0 chr11 40509451 40509576 -108273896 - AluJb SINE Alu -29 283 159 473 191 0 0 chr11 40509583 40509667 -108273805 - AluS SINE Alu -229 84 1 485 228 0 0 chr11 40511431 40511523 -108271949 - MER5A DNA MER1_type -89 100 9 3736 181 47 13 chr11 40512234 40512935 -108270537 - MER44D DNA MER2_type 0 605 9 21 36 0 0 chr11 40512976 40513004 -108270468 + AT_rich Low_complexity Low_complexity 1 28 0 381 351 56 48 chr11 40513208 40513275 -108270197 - MLT1D LTR MaLR 0 505 440 2591 3 0 0 chr11 40513275 40513557 -108269915 + AluYb8 SINE Alu 37 318 0 381 351 56 48 chr11 40513557 40513970 -108269502 - MLT1D LTR MaLR -65 440 21 1506 255 42 37 chr11 40514115 40514543 -108268929 - MLT1D LTR MaLR -74 431 2 752 344 25 19 chr11 40514545 40514905 -108268567 + MLT1K LTR MaLR 82 443 -145 27 62 0 0 chr11 40516249 40516297 -108267175 + AT_rich Low_complexity Low_complexity 1 48 0 219 355 56 52 chr11 40517299 40517530 -108265942 + MIR SINE MIR 1 232 -30 262 312 21 0 chr11 40517537 40517630 -108265842 + (TAG)n Simple_repeat Simple_repeat 2 96 0 280 43 43 0 chr11 40518658 40518704 -108264768 + (TC)n Simple_repeat Simple_repeat 1 48 0 268 368 14 35 chr11 40519140 40519428 -108264044 + ERVL LTR ERVL 5042 5323 -441 1053 329 17 41 chr11 40519621 40519931 -108263541 + LTR16A LTR ERVL 27 326 -124 2363 81 0 3 chr11 40519931 40520241 -108263231 - AluSc SINE Alu 0 309 1 1053 329 17 41 chr11 40520241 40520346 -108263126 + LTR16A LTR ERVL 326 432 -18 4508 175 14 49 chr11 40520547 40521794 -108261678 - L1MA8 LINE L1 -41 6250 5050 647 191 14 7 chr11 40521797 40521944 -108261528 + L1 LINE L1 5135 5282 -864 6592 30 0 0 chr11 40522769 40523564 -108259908 - L1P LINE L1 -3412 2734 1940 7457 31 1 0 chr11 40523564 40524534 -108258938 + L1PA3 LINE L1 5189 6159 0 22 35 0 0 chr11 40524696 40524725 -108258747 + AT_rich Low_complexity Low_complexity 1 29 0 365 94 0 50 chr11 40524730 40524807 -108258665 - MLT2B1 LTR ERVL 0 520 443 273 194 10 39 chr11 40524807 40524910 -108258562 + (CATATA)n Simple_repeat Simple_repeat 4 103 0 1428 224 126 11 chr11 40524947 40525327 -108258145 - MLT2B1 LTR ERVL -91 429 6 22 0 0 0 chr11 40525658 40525680 -108257792 + AT_rich Low_complexity Low_complexity 1 22 0 1469 250 30 41 chr11 40525687 40526195 -108257277 - MLT1D LTR MaLR -1 504 3 453 231 19 139 chr11 40526202 40526418 -108257054 - MLT1D-int LTR MaLR -6 1729 1237 196 354 14 95 chr11 40527346 40527493 -108255979 - L2 LINE L2 0 3272 3138 24 0 0 0 chr11 40527497 40527521 -108255951 + AT_rich Low_complexity Low_complexity 1 24 0 5069 200 13 29 chr11 40528195 40528837 -108254635 + L1ME4a LINE L1 19 640 -5786 180 0 0 0 chr11 40528837 40528857 -108254615 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 5069 200 13 29 chr11 40528857 40529264 -108254208 + L1ME4a LINE L1 640 1052 -5374 40 83 0 0 chr11 40529316 40529412 -108254060 + AT_rich Low_complexity Low_complexity 1 96 0 456 258 97 32 chr11 40529412 40529470 -108254002 + L1ME4a LINE L1 3839 3892 -2534 1142 129 129 105 chr11 40529470 40529507 -108253965 - THE1C LTR MaLR -2 373 338 1828 146 3 53 chr11 40529507 40529830 -108253642 + AluSx SINE Alu 1 307 -5 1142 129 129 105 chr11 40529830 40530155 -108253317 - THE1C LTR MaLR -37 338 2 456 258 97 32 chr11 40530155 40530344 -108253128 + L1ME4a LINE L1 3892 4102 -2324 323 227 0 0 chr11 40530392 40530458 -108253014 - L1ME4a LINE L1 -1254 5172 5107 262 287 61 33 chr11 40530467 40530648 -108252824 + L1ME4a LINE L1 5142 5327 -1099 258 248 8 48 chr11 40530890 40530957 -108252515 + L1 LINE L1 3176 3244 -2902 187 54 54 0 chr11 40530957 40530994 -108252478 + (TATAA)n Simple_repeat Simple_repeat 2 40 0 2306 158 31 14 chr11 40531001 40531420 -108252052 - MSTA LTR MaLR -2 426 1 258 248 8 48 chr11 40531420 40531469 -108252003 + L1 LINE L1 3250 3295 -2851 188 348 0 0 chr11 40531506 40531552 -108251920 + MIR SINE MIR 37 82 -180 303 247 45 45 chr11 40531556 40531645 -108251827 + MIR SINE MIR 57 145 -117 571 331 47 44 chr11 40531649 40532014 -108251458 - L2 LINE L2 -5 3308 2943 246 268 161 18 chr11 40532148 40532260 -108251212 - MIR SINE MIR -111 151 24 2482 115 8 16 chr11 40532441 40532815 -108250657 + THE1C LTR MaLR 5 375 0 191 204 20 0 chr11 40532840 40532889 -108250583 + (TA)n Simple_repeat Simple_repeat 1 50 0 2089 121 0 3 chr11 40532988 40533278 -108250194 - AluSq SINE Alu -14 299 11 291 248 10 30 chr11 40533527 40533628 -108249844 + (CATA)n Simple_repeat Simple_repeat 4 102 0 27 81 0 0 chr11 40533635 40533697 -108249775 + AT_rich Low_complexity Low_complexity 1 62 0 305 62 21 0 chr11 40534512 40534560 -108248912 + (TC)n Simple_repeat Simple_repeat 2 50 0 603 276 7 0 chr11 40534562 40534707 -108248765 - FRAM SINE Alu -33 143 1 27 49 0 0 chr11 40534784 40534825 -108248647 + AT_rich Low_complexity Low_complexity 1 41 0 453 257 56 32 chr11 40534827 40535111 -108248361 - L1M4 LINE L1 -758 5388 5098 418 380 24 5 chr11 40535143 40535553 -108247919 + L1ME4a LINE L1 5681 6098 -344 23 33 0 0 chr11 40535865 40535895 -108247577 + AT_rich Low_complexity Low_complexity 1 30 0 216 67 0 0 chr11 40536262 40536292 -108247180 + (GA)n Simple_repeat Simple_repeat 1 30 0 214 244 0 0 chr11 40536309 40536354 -108247118 + GA-rich Low_complexity Low_complexity 1 45 0 381 43 0 0 chr11 40536632 40536679 -108246793 + (TA)n Simple_repeat Simple_repeat 1 47 0 309 314 58 29 chr11 40536692 40536829 -108246643 + L1ME4a LINE L1 6255 6395 -6 29 28 0 0 chr11 40537603 40537639 -108245833 + AT_rich Low_complexity Low_complexity 1 36 0 256 111 0 0 chr11 40537792 40537837 -108245635 + MER4-int LTR ERV1 1112 1156 -5442 216 0 0 0 chr11 40537839 40537863 -108245609 + (GA)n Simple_repeat Simple_repeat 1 24 0 1367 215 59 99 chr11 40538753 40539279 -108244193 - MLT1D LTR MaLR 0 505 1 503 332 62 16 chr11 40539395 40539639 -108243833 + MIR SINE MIR 7 261 -1 251 177 16 0 chr11 40539870 40539932 -108243540 + A-rich Low_complexity Low_complexity 5 67 0 1694 210 14 78 chr11 40540011 40540449 -108243023 - MSTB LTR MaLR -16 410 1 261 0 0 0 chr11 40540459 40540488 -108242984 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 243 311 34 8 chr11 40540527 40540646 -108242826 + MLT1H LTR MaLR 46 167 -382 304 58 19 19 chr11 40540777 40540829 -108242643 + (TA)n Simple_repeat Simple_repeat 2 53 0 3089 171 47 15 chr11 40541579 40542370 -108241102 + L1MA8 LINE L1 4668 5481 -762 985 153 0 55 chr11 40542379 40542562 -108240910 + AluSg/x SINE Alu 138 310 -2 3624 164 20 72 chr11 40542563 40543411 -108240061 + L1MA8 LINE L1 5484 6287 -4 237 227 0 15 chr11 40543790 40543856 -108239616 + (ATG)n Simple_repeat Simple_repeat 2 66 0 195 284 11 53 chr11 40543859 40543954 -108239518 - MIR SINE MIR 0 262 172 360 311 0 0 chr11 40543981 40544084 -108239388 - MIR SINE MIR -7 255 153 431 179 9 0 chr11 40544128 40544234 -108239238 + (TA)n Simple_repeat Simple_repeat 2 108 0 2345 228 62 41 chr11 40544353 40545361 -108238111 + L1M3f LINE L1 29 1168 -4160 689 246 30 62 chr11 40545361 40545649 -108237823 + LTR1 LTR ERV1 1 425 -563 4334 209 31 32 chr11 40545677 40547007 -108236465 - L1 LINE L1 -3831 3734 2404 1262 187 121 91 chr11 40547009 40547494 -108235978 - LTR1B LTR ERV1 0 1020 344 8417 210 26 25 chr11 40547500 40550448 -108233024 + L1M3f LINE L1 2500 5460 -868 1453 96 5 5 chr11 40550448 40550656 -108232816 + L1PA7 LINE L1 5641 5848 -306 194 135 27 27 chr11 40550713 40550787 -108232685 + (TA)n Simple_repeat Simple_repeat 2 75 0 451 295 83 51 chr11 40551308 40551562 -108231910 + MIR SINE MIR 1 262 0 2564 48 3 0 chr11 40552195 40552504 -108230968 + AluY SINE Alu 2 311 0 258 277 93 54 chr11 40552652 40552984 -108230488 + L1M4 LINE L1 4509 4853 -1293 843 212 11 16 chr11 40553138 40553327 -108230145 + MER5A DNA MER1_type 1 188 -1 1305 233 52 40 chr11 40553449 40553852 -108229620 + MLT1C LTR MaLR 59 466 -1 596 264 6 25 chr11 40553897 40554056 -108229416 - MLT1J2 LTR MaLR -292 158 3 36 40 0 0 chr11 40555722 40555772 -108227700 + AT_rich Low_complexity Low_complexity 1 50 0 1859 164 10 0 chr11 40555887 40556186 -108227286 - AluSx SINE Alu -6 306 5 387 281 26 18 chr11 40556245 40556359 -108227113 + MLT1E LTR MaLR 7 121 -472 386 295 33 8 chr11 40556400 40556522 -108226950 + MLT1E LTR MaLR 119 243 -350 329 220 34 0 chr11 40556599 40556658 -108226814 + MLT1E1 LTR MaLR 280 340 -253 381 162 0 0 chr11 40556758 40556826 -108226646 + A-rich Low_complexity Low_complexity 1 68 0 520 135 250 7 chr11 40556841 40556981 -108226491 + MLT1E1 LTR MaLR 410 649 -5 457 296 37 25 chr11 40557666 40557828 -108225644 + Charlie1 DNA MER1_type 6 169 -2592 2636 118 47 7 chr11 40557862 40558287 -108225185 + L1PA15 LINE L1 5711 6152 -13 570 266 12 41 chr11 40558359 40558528 -108224944 + MER63A DNA MER1_type 47 210 0 356 197 15 0 chr11 40558554 40558620 -108224852 + Charlie1 DNA MER1_type 2693 2759 -2 1814 135 63 61 chr11 40558811 40559174 -108224298 + THE1B LTR MaLR 1 364 0 10820 116 11 1 chr11 40559174 40560739 -108222733 + THE1B-int LTR MaLR 1 1580 0 1750 104 61 29 chr11 40560739 40561018 -108222454 + THE1B LTR MaLR 1 288 -76 1562 196 44 22 chr11 40563985 40564352 -108219120 - THE1C LTR MaLR 0 375 1 25 0 0 0 chr11 40564678 40564703 -108218769 + AT_rich Low_complexity Low_complexity 1 25 0 27 62 0 0 chr11 40565041 40565089 -108218383 + AT_rich Low_complexity Low_complexity 1 48 0 291 308 216 13 chr11 40566183 40566410 -108217062 + L2 LINE L2 2622 2894 -420 712 136 8 30 chr11 40566600 40566732 -108216740 - AluJb SINE Alu -26 286 158 1336 168 102 71 chr11 40566732 40567206 -108216266 + LTR1B LTR ERV1 291 783 -2 1921 167 39 64 chr11 40567252 40567689 -108215783 - MSTA LTR MaLR -2 426 1 339 347 16 0 chr11 40567888 40568009 -108215463 - MLT1I LTR MaLR -248 161 39 2132 112 0 3 chr11 40568174 40568468 -108215004 - AluSg SINE Alu -17 293 1 394 311 33 28 chr11 40569247 40569427 -108214045 - MIR SINE MIR -62 200 20 318 50 0 0 chr11 40569535 40569575 -108213897 + (TG)n Simple_repeat Simple_repeat 2 41 0 23 86 0 0 chr11 40569852 40569910 -108213562 + AT_rich Low_complexity Low_complexity 1 58 0 279 0 0 0 chr11 40569941 40569972 -108213500 + (T)n Simple_repeat Simple_repeat 1 31 0 297 371 82 35 chr11 40570482 40570797 -108212675 + L2 LINE L2 2981 3310 -3 198 0 0 0 chr11 40571168 40571190 -108212282 + (T)n Simple_repeat Simple_repeat 1 22 0 411 356 88 25 chr11 40572858 40573220 -108210252 + L2 LINE L2 2130 2514 -800 2083 119 7 0 chr11 40573687 40573982 -108209490 - AluSx SINE Alu -15 297 1 225 304 0 9 chr11 40573990 40574072 -108209400 - MIR SINE MIR -45 163 84 388 336 31 54 chr11 40575734 40575957 -108207515 + MIR SINE MIR 36 253 -9 3257 152 11 4 chr11 40577763 40578291 -108205181 - Tigger3b DNA MER2_type -1 1230 699 2317 164 36 5 chr11 40578574 40578989 -108204483 + MSTA LTR MaLR 1 428 0 449 235 22 22 chr11 40578990 40579126 -108204346 - L1ME1 LINE L1 -224 5942 5807 491 289 12 67 chr11 40579159 40579412 -108204060 - L1ME1 LINE L1 -340 5826 5588 1105 117 6 6 chr11 40579566 40579737 -108203735 - Tigger3b DNA MER2_type -718 513 343 197 163 20 0 chr11 40579738 40579787 -108203685 + (TA)n Simple_repeat Simple_repeat 2 51 0 1842 167 22 9 chr11 40579791 40580115 -108203357 - Tigger3b DNA MER2_type -902 329 2 377 195 0 26 chr11 40580115 40580191 -108203281 + MER21B LTR ERV1 17 90 -773 236 304 38 13 chr11 40580213 40580292 -108203180 + MER21B LTR ERV1 19 99 -764 21 57 0 0 chr11 40582291 40582326 -108201146 + AT_rich Low_complexity Low_complexity 1 35 0 476 32 16 0 chr11 40582341 40582403 -108201069 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 410 271 23 8 chr11 40583174 40583307 -108200165 + L1MD2 LINE L1 6208 6342 -17 1532 205 65 8 chr11 40583319 40583689 -108199783 + L1MC3 LINE L1 6707 7097 -688 253 273 11 11 chr11 40583689 40583777 -108199695 + MLT1F1 LTR MaLR 35 122 -445 431 240 30 0 chr11 40583781 40583881 -108199591 + L1MC3 LINE L1 7189 7291 -494 1672 197 61 54 chr11 40583881 40584344 -108199128 - MER66A LTR ERV1 0 601 101 1867 226 43 4 chr11 40584430 40584900 -108198572 + L1MC3 LINE L1 7288 7775 -10 240 35 0 0 chr11 40585001 40585030 -108198442 + (CA)n Simple_repeat Simple_repeat 2 30 0 192 158 0 0 chr11 40585034 40585072 -108198400 + GA-rich Low_complexity Low_complexity 1 38 0 269 271 85 25 chr11 40585183 40585301 -108198171 + MIR SINE MIR 112 236 -26 1170 253 97 67 chr11 40585496 40586094 -108197378 + MLT1G LTR MaLR 1 581 -9 250 85 21 21 chr11 40586155 40586202 -108197270 + (TTTTG)n Simple_repeat Simple_repeat 4 50 0 31 0 0 0 chr11 40586359 40586390 -108197082 + AT_rich Low_complexity Low_complexity 1 31 0 480 18 0 0 chr11 40587986 40588043 -108195429 + (TG)n Simple_repeat Simple_repeat 2 58 0 182 36 0 36 chr11 40588145 40588173 -108195299 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 2479 183 41 18 chr11 40589555 40590352 -108193120 + L1MA9 LINE L1 4982 5785 -527 2166 164 79 33 chr11 40591218 40591588 -108191884 + L1MA9 LINE L1 5773 6172 -140 252 0 0 0 chr11 40591588 40591616 -108191856 + (CA)n Simple_repeat Simple_repeat 2 29 0 2166 164 79 33 chr11 40591616 40591727 -108191745 + L1MA9 LINE L1 6172 6276 -36 649 238 77 61 chr11 40591828 40592365 -108191107 - LTR48 LTR ERV1 0 787 3 378 322 154 0 chr11 40592459 40592602 -108190870 + MER5A DNA MER1_type 24 188 -1 306 0 0 0 chr11 40592675 40592709 -108190763 + (TTA)n Simple_repeat Simple_repeat 1 34 0 4701 72 14 0 chr11 40592710 40593336 -108190136 - L1PA7 LINE L1 -18 6136 5502 301 255 0 149 chr11 40593339 40593480 -108189992 - MIR SINE MIR -119 143 24 23 33 0 0 chr11 40593995 40594025 -108189447 + AT_rich Low_complexity Low_complexity 1 30 0 236 240 0 0 chr11 40596362 40596412 -108187060 - MIR SINE MIR -30 232 183 327 177 0 0 chr11 40596522 40596584 -108186888 + (CA)n Simple_repeat Simple_repeat 2 63 0 456 294 34 67 chr11 40597465 40597703 -108185769 - MIR SINE MIR -21 241 12 362 345 61 26 chr11 40597942 40598206 -108185266 - L1MC4 LINE L1 -43 7999 7727 2645 168 46 39 chr11 40598224 40598790 -108184682 - L1MB7 LINE L1 -23 6161 5592 395 248 62 55 chr11 40598799 40599073 -108184399 - L1MC5 LINE L1 -371 7590 7315 22 0 0 0 chr11 40600404 40600426 -108183046 + AT_rich Low_complexity Low_complexity 1 22 0 232 363 0 11 chr11 40600977 40601068 -108182404 - MIR3 SINE MIR -14 194 105 430 365 48 30 chr11 40601297 40601634 -108181838 + MLT1J LTR MaLR 45 387 -124 510 156 52 0 chr11 40602180 40602276 -108181196 - L1PA15 LINE L1 -4 6161 6061 296 164 0 0 chr11 40602485 40602540 -108180932 + L1MC/D LINE L1 5768 5822 -1986 231 188 0 0 chr11 40603574 40603622 -108179850 + (TAA)n Simple_repeat Simple_repeat 2 49 0 494 144 66 29 chr11 40603987 40604330 -108179142 + (TA)n Simple_repeat Simple_repeat 1 355 0 213 207 36 27 chr11 40604283 40604394 -108179078 + (TTATA)n Simple_repeat Simple_repeat 5 116 0 * 253 112 45 62 chr11 40604397 40604576 -108178896 + (TATAA)n Simple_repeat Simple_repeat 4 179 0 46 45 0 0 chr11 40604592 40604659 -108178813 + AT_rich Low_complexity Low_complexity 1 67 0 198 211 30 6 chr11 40604669 40604835 -108178637 + (TATAA)n Simple_repeat Simple_repeat 2 171 0 180 146 76 23 chr11 40604796 40604967 -108178505 + (TA)n Simple_repeat Simple_repeat 1 180 0 * 29 0 0 0 chr11 40604974 40605003 -108178469 + AT_rich Low_complexity Low_complexity 1 29 0 220 162 66 0 chr11 40605015 40605182 -108178290 + (TA)n Simple_repeat Simple_repeat 1 178 0 31 44 0 0 chr11 40605182 40605227 -108178245 + AT_rich Low_complexity Low_complexity 1 45 0 559 305 52 0 chr11 40605371 40605604 -108177868 + MER46C DNA MER2_type 79 323 -15 245 368 40 24 chr11 40605881 40606131 -108177341 + MIR SINE MIR 5 258 -4 853 111 15 7 chr11 40606894 40607029 -108176443 - L1PB2 LINE L1 0 6151 6016 11576 231 32 20 chr11 40607629 40612331 -108171141 + L1PB4 LINE L1 1705 6487 -372 270 0 0 0 chr11 40612331 40612361 -108171111 + (TG)n Simple_repeat Simple_repeat 2 31 0 11576 231 32 20 chr11 40612361 40612739 -108170733 + L1PB4 LINE L1 6487 6859 0 2647 32 3 0 chr11 40613016 40613326 -108170146 - AluY SINE Alu 0 311 1 239 371 0 0 chr11 40615491 40615561 -108167911 + MIR SINE MIR 37 106 -102 23 0 0 0 chr11 40615666 40615689 -108167783 + AT_rich Low_complexity Low_complexity 1 23 0 327 157 25 25 chr11 40615974 40616095 -108167377 + (TA)n Simple_repeat Simple_repeat 1 121 0 198 220 0 0 chr11 40616158 40616217 -108167255 + (TA)n Simple_repeat Simple_repeat 1 59 0 357 283 8 0 chr11 40616244 40616364 -108167108 + (TA)n Simple_repeat Simple_repeat 1 121 0 2267 75 23 3 chr11 40616445 40616752 -108166720 + L1PA7 LINE L1 5837 6149 -5 5091 105 1 7 chr11 40616764 40617536 -108165936 + L1PA8 LINE L1 5417 6184 0 336 309 27 27 chr11 40617571 40617720 -108165752 - L1ME LINE L1 -540 5581 5433 328 298 99 20 chr11 40618546 40618697 -108164775 + MIR SINE MIR 29 191 -71 214 207 0 86 chr11 40618707 40618765 -108164707 + MER5B DNA MER1_type 1 53 -125 392 296 142 22 chr11 40620584 40620810 -108162662 - MLT1J1 LTR MaLR -127 319 67 321 315 0 0 chr11 40620899 40620991 -108162481 + MIR SINE MIR 158 249 -13 322 345 35 6 chr11 40621381 40621552 -108161920 - MLT1L LTR MaLR -342 273 98 365 375 69 30 chr11 40621872 40622235 -108161237 + L2 LINE L2 2937 3313 0 3280 197 30 79 chr11 40622249 40623267 -108160205 - LTR5 LTR ERVK 0 969 1 1989 116 10 0 chr11 40623388 40623680 -108159792 - AluY SINE Alu 0 311 17 22 72 0 36 chr11 40623780 40623863 -108159609 + AT_rich Low_complexity Low_complexity 1 80 0 21 0 0 0 chr11 40623975 40623996 -108159476 + AT_rich Low_complexity Low_complexity 1 21 0 584 0 28 0 chr11 40624668 40624739 -108158733 + (TTATG)n Simple_repeat Simple_repeat 3 75 0 1259 235 35 25 chr11 40624796 40625111 -108158361 + MLT1E LTR MaLR 276 593 0 25 51 0 0 chr11 40625391 40625430 -108158042 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr11 40625481 40625502 -108157970 + AT_rich Low_complexity Low_complexity 1 21 0 284 281 24 84 chr11 40626020 40626187 -108157285 + L2 LINE L2 3142 3298 -15 381 144 38 30 chr11 40628332 40628464 -108155008 + (TA)n Simple_repeat Simple_repeat 1 133 0 301 143 0 20 chr11 40628527 40628576 -108154896 - MIR3 SINE MIR -13 195 148 422 160 8 48 chr11 40629183 40629308 -108154164 + CT-rich Low_complexity Low_complexity 1 120 0 191 219 301 14 chr11 40629544 40629617 -108153855 - MIR3 SINE MIR -103 105 12 847 194 13 129 chr11 40630086 40630396 -108153076 + L1MC5 LINE L1 6682 6955 -1006 1719 206 20 43 chr11 40631795 40632188 -108151284 + MLT1B LTR MaLR 1 384 -6 2370 153 41 2 chr11 40632421 40632833 -108150639 + MSTA LTR MaLR 1 428 0 23 0 0 0 chr11 40632991 40633014 -108150458 + AT_rich Low_complexity Low_complexity 1 23 0 1908 177 61 54 chr11 40633799 40634438 -108149034 - MER39 LTR ERV1 0 707 1 244 229 0 0 chr11 40635178 40635226 -108148246 + MIR SINE MIR 71 118 -144 22 56 0 0 chr11 40635276 40635312 -108148160 + AT_rich Low_complexity Low_complexity 1 36 0 926 343 119 48 chr11 40635395 40635829 -108147643 - L2 LINE L2 -199 3114 2712 738 165 32 6 chr11 40635829 40635987 -108147485 + L1MA8 LINE L1 6125 6286 -5 926 343 119 48 chr11 40635987 40636460 -108147012 - L2 LINE L2 -601 2712 2128 1123 203 127 41 chr11 40636460 40636532 -108146940 - MER2 DNA MER2_type 0 344 280 234 0 0 0 chr11 40636532 40636558 -108146914 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1123 203 127 41 chr11 40636558 40636801 -108146671 - MER2 DNA MER2_type -64 280 2 926 343 119 48 chr11 40636801 40637019 -108146453 - L2 LINE L2 -1185 2128 1927 1272 255 48 101 chr11 40637126 40637690 -108145782 - MLT1F LTR MaLR -8 534 1 889 263 76 113 chr11 40637874 40638468 -108145004 - MER21B LTR ERV1 -270 593 22 2496 188 8 23 chr11 40641058 40641543 -108141929 + MER66B LTR ERV1 9 486 0 213 295 0 0 chr11 40642306 40642367 -108141105 + (CATATA)n Simple_repeat Simple_repeat 5 65 0 534 253 58 86 chr11 40642791 40643048 -108140424 - MIR SINE MIR -1 261 12 255 305 124 33 chr11 40643312 40643522 -108139950 + L2 LINE L2 2638 2866 -448 183 348 57 69 chr11 40643597 40643717 -108139755 + L2 LINE L2 2930 3050 -263 461 328 16 0 chr11 40643717 40643900 -108139572 + MER5A DNA MER1_type 1 186 -3 183 348 57 69 chr11 40643900 40644026 -108139446 + L2 LINE L2 3050 3173 -140 362 200 0 0 chr11 40644988 40645053 -108138419 - MER5A DNA MER1_type 0 189 125 3064 134 53 36 chr11 40645053 40645657 -108137815 + LTR18B LTR ERVL 1 614 0 1438 201 47 21 chr11 40645678 40646110 -108137362 + HERVL18 LTR ERVL 19 666 -5381 1213 187 23 18 chr11 40646211 40646511 -108136961 + HERVL18 LTR ERVL 2119 2477 -3570 * 1943 209 5 29 chr11 40646487 40646865 -108136607 + HERVL18 LTR ERVL 2720 3088 -2959 * 3403 177 6 0 chr11 40646856 40647398 -108136074 + HERVL18 LTR ERVL 2947 3491 -2556 2791 128 129 27 chr11 40647557 40648114 -108135358 + LTR18B LTR ERVL 1 614 0 536 246 35 0 chr11 40648114 40648228 -108135244 - MER5A DNA MER1_type -60 129 12 707 128 0 0 chr11 40648363 40648472 -108135000 - L1PB1 LINE L1 -3 6148 6040 212 0 36 0 chr11 40648510 40648538 -108134934 + (CAAAAA)n Simple_repeat Simple_repeat 5 33 0 304 318 150 6 chr11 40649993 40650166 -108133306 - L3b LINE CR1 -277 1306 1109 21 36 0 0 chr11 40650700 40650728 -108132744 + AT_rich Low_complexity Low_complexity 1 28 0 2183 206 63 12 chr11 40651320 40651830 -108131642 - L1MA8 LINE L1 -28 6263 5728 316 241 139 15 chr11 40652068 40652205 -108131267 + L1MB8 LINE L1 5941 6094 -84 7425 34 2 6 chr11 40652212 40653353 -108130119 + L1PA3 LINE L1 5056 6155 0 2215 187 31 39 chr11 40653498 40654011 -108129461 - LTR22 LTR ERVK 0 509 1 201 259 17 17 chr11 40654055 40654113 -108129359 + GA-rich Low_complexity Low_complexity 3 60 0 643 220 19 16 chr11 40654532 40654671 -108128801 + L1MA8 LINE L1 6077 6224 -76 204 40 0 0 chr11 40654671 40654696 -108128776 + (TG)n Simple_repeat Simple_repeat 2 26 0 643 220 19 16 chr11 40654696 40654748 -108128724 + L1MA8 LINE L1 6224 6274 -26 504 310 38 5 chr11 40655065 40655280 -108128192 + MLT2E LTR ERVL 1 226 -402 605 259 17 97 chr11 40655445 40655735 -108127737 - MER93b LTR ERV1 -87 286 20 1558 198 40 98 chr11 40655887 40656297 -108127175 + MLT1C LTR MaLR 17 397 -70 2103 124 51 23 chr11 40656297 40656651 -108126821 - THE1B LTR MaLR 0 364 1 1558 198 40 98 chr11 40656651 40656719 -108126753 + MLT1C LTR MaLR 397 467 0 1619 210 79 51 chr11 40657023 40657514 -108125958 - MLT1D LTR MaLR 0 505 1 234 330 100 10 chr11 40659877 40659977 -108123495 + MIR3 SINE MIR 75 183 -25 1760 154 162 11 chr11 40660389 40660760 -108122712 + MSTA LTR MaLR 2 428 0 5246 204 66 31 chr11 40660762 40660981 -108122491 + MSTA-int LTR MaLR 3 213 -1438 1917 153 137 16 chr11 40660981 40661361 -108122111 - MSTA LTR MaLR 0 428 3 5246 204 66 31 chr11 40661361 40662005 -108121467 + MSTA-int LTR MaLR 213 920 -731 1825 163 10 47 chr11 40662005 40662392 -108121080 + THE1C LTR MaLR 1 373 -2 5246 204 66 31 chr11 40662392 40662693 -108120779 + MSTA-int LTR MaLR 920 1209 -442 29 28 0 0 chr11 40662724 40662760 -108120712 + AT_rich Low_complexity Low_complexity 1 36 0 378 238 141 13 chr11 40663280 40663507 -108119965 - MER69 DNA AcHobo -108 2418 2163 232 233 0 0 chr11 40663642 40663685 -108119787 + (CA)n Simple_repeat Simple_repeat 2 44 0 440 312 174 36 chr11 40663701 40663954 -108119518 - MER69 DNA AcHobo -938 288 1 21 0 0 0 chr11 40664518 40664539 -108118933 + AT_rich Low_complexity Low_complexity 1 21 0 2485 137 0 11 chr11 40666357 40666736 -108116736 + THE1C LTR MaLR 1 375 0 2176 100 6 13 chr11 40667747 40668058 -108115414 - AluSc SINE Alu 0 309 1 295 345 153 27 chr11 40668906 40669129 -108114343 + MIR SINE MIR 12 262 0 1411 219 48 11 chr11 40669151 40669503 -108113969 + MLT1A1 LTR MaLR 1 365 0 202 242 16 0 chr11 40669808 40669870 -108113602 + (TA)n Simple_repeat Simple_repeat 1 63 0 34 0 0 0 chr11 40670103 40670137 -108113335 + AT_rich Low_complexity Low_complexity 1 34 0 2077 120 7 3 chr11 40670799 40671107 -108112365 - AluSc SINE Alu 0 309 1 263 297 112 48 chr11 40671647 40671896 -108111576 + L1M4b LINE L1 12 276 -6583 720 300 46 40 chr11 40671946 40672466 -108111006 + L1M4b LINE L1 2021 2543 -4595 418 122 11 11 chr11 40672614 40672704 -108110768 + (TA)n Simple_repeat Simple_repeat 2 91 0 999 87 16 0 chr11 40672985 40673112 -108110360 + AluSc SINE Alu 1 129 -180 290 265 10 0 chr11 40673306 40673404 -108110068 + L1M4b LINE L1 2940 3038 -4100 1026 180 15 5 chr11 40673447 40673653 -108109819 + L1MA6 LINE L1 6093 6300 0 321 329 13 0 chr11 40673674 40673829 -108109643 + L1M4b LINE L1 2996 3152 -3805 525 285 60 4 chr11 40673829 40674064 -108109408 - L1M4 LINE L1 -5157 1385 1138 323 268 154 8 chr11 40674083 40674206 -108109266 + MIR SINE MIR 119 259 -3 2129 106 7 0 chr11 40675232 40675524 -108107948 - AluSq SINE Alu -19 294 1 1618 187 82 0 chr11 40675570 40675886 -108107586 + L1MC1 LINE L1 5986 6327 -6 314 339 0 36 chr11 40676172 40676284 -108107188 + MIR3 SINE MIR 47 154 -54 383 260 10 19 chr11 40676498 40676602 -108106870 + MIR SINE MIR 74 176 -86 24 32 0 0 chr11 40676766 40676797 -108106675 + AT_rich Low_complexity Low_complexity 1 31 0 2000 131 3 13 chr11 40677254 40677567 -108105905 + AluSx SINE Alu 2 311 -1 22 70 0 0 chr11 40677612 40677655 -108105817 + AT_rich Low_complexity Low_complexity 1 43 0 510 341 25 40 chr11 40677736 40678059 -108105413 + L1MEc LINE L1 143 460 -5936 1086 282 115 27 chr11 40678089 40678966 -108104506 + L1MEc LINE L1 816 1769 -4627 2117 214 62 45 chr11 40679034 40679659 -108103813 + L1MC3 LINE L1 7133 7768 -17 2258 271 63 17 chr11 40679670 40681041 -108102431 + L1MEc LINE L1 1850 3236 -2979 954 257 192 21 chr11 40681370 40681751 -108101721 + LTR40b LTR ERVL 8 453 -9 2711 165 23 4 chr11 40681751 40682273 -108101199 - L1MA8 LINE L1 -1 6290 5759 1810 201 17 8 chr11 40682435 40682794 -108100678 - MLT1A1 LTR MaLR -1 364 3 289 340 57 67 chr11 40682927 40683224 -108100248 - L2 LINE L2 -2818 496 203 314 239 0 15 chr11 40683273 40683340 -108100132 + MER8 DNA MER2_type 1 66 -173 804 198 68 19 chr11 40683607 40683769 -108099703 + MER8 DNA MER2_type 70 239 0 287 19 77 0 chr11 40685237 40685289 -108098183 + (TA)n Simple_repeat Simple_repeat 1 56 0 392 272 29 10 chr11 40685627 40685730 -108097742 - L2 LINE L2 -10 3303 3199 568 235 7 7 chr11 40686222 40686375 -108097097 + L1MA5 LINE L1 6148 6300 0 186 43 0 0 chr11 40686676 40686699 -108096773 + (CA)n Simple_repeat Simple_repeat 2 24 0 442 304 99 30 chr11 40686978 40687179 -108096293 + HAL1 LINE L1 1260 1474 -1033 2237 62 0 28 chr11 40687511 40687849 -108095623 - AluY SINE Alu 0 330 1 1717 110 78 41 chr11 40688866 40689246 -108094226 + L1MA5A LINE L1 5963 6354 0 237 316 63 0 chr11 40689496 40689575 -108093897 + L2 LINE L2 3185 3268 -4 22 0 0 0 chr11 40689813 40689835 -108093637 + AT_rich Low_complexity Low_complexity 1 22 0 183 308 0 0 chr11 40691599 40691638 -108091834 + MIR SINE MIR 16 54 -208 274 327 37 31 chr11 40691710 40691872 -108091600 + MIR SINE MIR 96 258 -4 348 90 0 0 chr11 40691928 40691983 -108091489 - Alu SINE Alu -261 47 2 317 265 12 48 chr11 40691989 40692072 -108091400 + L2 LINE L2 3193 3272 0 259 318 77 46 chr11 40692185 40692380 -108091092 + MIR SINE MIR 61 261 -1 1822 133 31 3 chr11 40692740 40693026 -108090446 - AluSx SINE Alu -18 294 1 5978 130 22 17 chr11 40693935 40694899 -108088573 - LTR5 LTR ERVK 0 969 1 22 0 0 0 chr11 40694948 40694970 -108088502 + AT_rich Low_complexity Low_complexity 1 22 0 260 191 56 56 chr11 40695684 40695773 -108087699 + MER61E LTR ERV1 1 89 -480 * 1982 218 37 88 chr11 40695743 40696421 -108087051 + LTR19C LTR ERV1 137 779 0 308 242 40 20 chr11 40697138 40697237 -108086235 - MER77 LTR ERV1 -39 566 466 2008 209 32 7 chr11 40697298 40697709 -108085763 + MSTB LTR MaLR 1 421 -5 652 298 19 66 chr11 40697711 40698030 -108085442 - MER77 LTR ERV1 -248 357 54 1003 165 151 33 chr11 40698092 40698164 -108085308 + MER49 LTR ERV1 1 63 -860 1840 159 3 25 chr11 40698164 40698478 -108084994 - AluSx SINE Alu -5 307 1 1003 165 151 33 chr11 40698478 40698693 -108084779 + MER49 LTR ERV1 63 283 -640 351 159 35 29 chr11 40698689 40698801 -108084671 + MER4E LTR ERV1 64 284 -588 * 1650 185 16 41 chr11 40698795 40699162 -108084310 + MER4D LTR ERV1 544 901 -2 268 131 16 16 chr11 40699204 40699265 -108084207 + CT-rich Low_complexity Low_complexity 3 63 0 189 121 0 0 chr11 40699710 40699743 -108083729 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 1975 168 80 5 chr11 40700085 40700460 -108083012 - MER57A LTR ERV1 0 403 1 262 322 18 28 chr11 40700779 40700901 -108082571 + MIR SINE MIR 30 141 -67 409 303 86 17 chr11 40701217 40701392 -108082080 - MER63A DNA MER1_type -19 191 5 291 28 0 0 chr11 40701696 40701732 -108081740 + (TG)n Simple_repeat Simple_repeat 2 37 0 204 353 29 0 chr11 40701869 40701937 -108081535 - L2 LINE L2 -638 2676 2607 204 135 0 0 chr11 40701990 40702027 -108081445 + (GGAA)n Simple_repeat Simple_repeat 4 40 0 1580 214 0 22 chr11 40702170 40702488 -108080984 - AluJo SINE Alu 0 312 1 3327 120 26 4 chr11 40702779 40703279 -108080193 - MER9 LTR ERVK 0 511 1 259 311 98 8 chr11 40703428 40703550 -108079922 - MIR3 SINE MIR -5 203 71 228 35 0 0 chr11 40704754 40704783 -108078689 + (CA)n Simple_repeat Simple_repeat 2 30 0 427 248 18 37 chr11 40704809 40704918 -108078554 - L2 LINE L2 0 3313 3207 423 277 104 59 chr11 40705137 40705357 -108078115 - MIR SINE MIR -30 232 3 27 49 0 0 chr11 40706761 40706802 -108076670 + AT_rich Low_complexity Low_complexity 1 41 0 2023 148 0 3 chr11 40706875 40707185 -108076287 - AluSg SINE Alu -1 309 1 264 362 141 7 chr11 40707558 40707707 -108075765 - MIR SINE MIR -57 205 37 429 268 38 44 chr11 40707708 40707891 -108075581 + MER117 DNA MER1_type 6 187 -10 192 125 0 0 chr11 40708437 40708469 -108075003 + (TTTC)n Simple_repeat Simple_repeat 4 35 0 1052 215 114 57 chr11 40709438 40709548 -108073924 + MLT1H-int LTR MaLR 997 1099 -272 2115 131 3 0 chr11 40709548 40709854 -108073618 + AluSg SINE Alu 1 307 -3 1052 215 114 57 chr11 40709854 40710059 -108073413 + MLT1H-int LTR MaLR 1099 1330 -41 233 170 75 19 chr11 40710063 40710116 -108073356 + MLT1B LTR MaLR 203 258 -132 209 327 119 39 chr11 40710443 40710703 -108072769 - L2 LINE L2 -789 2525 2245 409 222 44 33 chr11 40710816 40710996 -108072476 - Charlie4 DNA MER1_type -40 1921 1740 766 151 0 8 chr11 40711015 40711141 -108072331 + FRAM SINE Alu 31 155 -21 367 213 39 150 chr11 40711148 40711355 -108072117 - Charlie4 DNA MER1_type -1698 263 80 212 0 36 0 chr11 40711357 40711385 -108072087 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 198 329 61 12 chr11 40711684 40711766 -108071706 + MIR SINE MIR 64 149 -113 745 293 159 30 chr11 40711800 40711987 -108071485 + MLT1H LTR MaLR 43 204 -345 4234 128 3 5 chr11 40711987 40712621 -108070851 - MER51A LTR ERV1 -1 633 1 745 293 159 30 chr11 40712621 40712866 -108070606 + MLT1H LTR MaLR 204 531 -18 1949 126 0 11 chr11 40712969 40713306 -108070166 + AluSq SINE Alu 1 334 0 427 20 0 0 chr11 40713255 40713336 -108070136 + (TAAA)n Simple_repeat Simple_repeat 2 82 0 2355 179 2 20 chr11 40713347 40713789 -108069683 + Tigger2a DNA MER2_type 1 434 0 240 235 31 102 chr11 40714031 40714129 -108069343 - MIR SINE MIR 0 262 172 306 277 89 9 chr11 40714553 40714665 -108068807 + MIR SINE MIR 111 231 -31 216 388 30 37 chr11 40714877 40715011 -108068461 + MIR3 SINE MIR 24 156 -52 21 0 0 0 chr11 40715852 40715873 -108067599 + AT_rich Low_complexity Low_complexity 1 21 0 763 281 40 9 chr11 40716466 40716694 -108066778 - MLT1G LTR MaLR 0 590 356 223 303 30 0 chr11 40716714 40716813 -108066659 + MIR SINE MIR 104 205 -57 428 280 149 36 chr11 40717043 40717211 -108066261 + MIR SINE MIR 4 190 -72 45 102 0 0 chr11 40718037 40718194 -108065278 + AT_rich Low_complexity Low_complexity 1 157 0 1497 198 7 0 chr11 40718695 40718993 -108064479 + L1PA16 LINE L1 5866 6165 -1 9024 22 0 0 chr11 40719434 40721257 -108062215 - L1PA3 LINE L1 -8 6147 4325 1425 204 47 62 chr11 40722906 40723308 -108060164 + MER57A LTR ERV1 8 403 0 21 0 0 0 chr11 40724267 40724288 -108059184 + AT_rich Low_complexity Low_complexity 1 21 0 267 192 39 0 chr11 40724751 40724829 -108058643 + (TA)n Simple_repeat Simple_repeat 1 81 0 210 191 0 0 chr11 40726068 40726115 -108057357 + (TG)n Simple_repeat Simple_repeat 1 47 0 3106 248 72 25 chr11 40726540 40727823 -108055649 + L1MDa LINE L1 3 1398 -5142 2792 189 97 11 chr11 40728384 40729035 -108054437 + MER67C LTR ERV1 4 710 0 5308 58 1 4 chr11 40731720 40732386 -108051086 + L1PA7 LINE L1 5477 6142 -12 233 29 29 0 chr11 40732386 40732420 -108051052 + (TTAAA)n Simple_repeat Simple_repeat 3 37 0 5726 159 56 31 chr11 40732865 40733039 -108050433 - L1MA2 LINE L1 -5 6299 6131 1884 152 39 15 chr11 40733039 40733374 -108050098 + MER61A LTR ERV1 1 343 0 5726 159 56 31 chr11 40733374 40735311 -108048161 - L1MA2 LINE L1 -173 6131 4127 2026 93 6 40 chr11 40735857 40736179 -108047293 + AluY SINE Alu 1 311 0 189 0 0 0 chr11 40736801 40736822 -108046650 + (T)n Simple_repeat Simple_repeat 1 21 0 249 289 24 12 chr11 40737353 40737436 -108046036 - MIR SINE MIR -125 137 54 2541 225 54 21 chr11 40738970 40739601 -108043871 - MER82 DNA MER2_type 0 653 2 283 312 0 26 chr11 40739820 40739897 -108043575 - L2 LINE L2 -4 3309 3235 6298 199 156 22 chr11 40740905 40742453 -108041019 + MER52A LTR ERV1 1 1755 0 186 242 0 0 chr11 40742683 40742716 -108040756 - MIR SINE MIR -194 68 36 1323 171 20 97 chr11 40742770 40743120 -108040352 + MLT1A2 LTR MaLR 4 326 -48 972 39 0 23 chr11 40744203 40744333 -108039139 + L1PA5 LINE L1 6028 6154 0 303 318 135 14 chr11 40744952 40745100 -108038372 - MIR SINE MIR -44 218 53 225 87 43 22 chr11 40745141 40745187 -108038285 + (TTTAA)n Simple_repeat Simple_repeat 4 50 0 207 179 0 0 chr11 40745794 40745833 -108037639 + T-rich Low_complexity Low_complexity 2 40 0 1667 174 158 13 chr11 40747329 40747703 -108035769 + MSTA LTR MaLR 1 428 0 238 254 51 0 chr11 40747885 40747944 -108035528 - MER63A DNA MER1_type 0 210 149 36 62 0 0 chr11 40748802 40748866 -108034606 + AT_rich Low_complexity Low_complexity 1 64 0 21 36 0 0 chr11 40749214 40749242 -108034230 + AT_rich Low_complexity Low_complexity 1 28 0 384 252 197 8 chr11 40749730 40749857 -108033615 - MER5A DNA MER1_type 0 189 39 4084 140 51 3 chr11 40751103 40751854 -108031618 - L1PA16 LINE L1 -172 5994 5211 337 178 29 14 chr11 40751854 40751997 -108031475 + CT-rich Low_complexity Low_complexity 1 145 0 186 43 0 0 chr11 40751997 40752020 -108031452 + (CATA)n Simple_repeat Simple_repeat 1 23 0 264 30 0 0 chr11 40752038 40752071 -108031401 + (TTTC)n Simple_repeat Simple_repeat 4 36 0 764 167 29 0 chr11 40752561 40752811 -108030661 + CT-rich Low_complexity Low_complexity 1 257 0 1491 119 26 63 chr11 40752811 40753079 -108030393 - AluSp SINE Alu -12 301 44 7466 214 25 6 chr11 40753079 40754776 -108028696 - L1PA16 LINE L1 -915 5231 3502 289 313 81 0 chr11 40755316 40755415 -108028057 + MIR3 SINE MIR 54 160 -48 236 368 98 15 chr11 40755476 40755609 -108027863 - L2 LINE L2 -4 3268 3125 8209 64 5 8 chr11 40755680 40756755 -108026717 + MER11C LTR ERVK 1 1071 0 350 217 116 29 chr11 40757501 40757639 -108025833 + MER3 DNA MER1_type 4 153 -56 22 0 0 0 chr11 40758006 40758028 -108025444 + AT_rich Low_complexity Low_complexity 1 22 0 199 111 22 22 chr11 40758155 40758200 -108025272 + (TAA)n Simple_repeat Simple_repeat 1 45 0 295 293 65 16 chr11 40758381 40758504 -108024968 - MLT1K LTR MaLR -62 526 398 2245 257 66 30 chr11 40758960 40759780 -108023692 - L1MD3 LINE L1 -1 7994 7146 333 47 0 0 chr11 40760836 40760879 -108022593 + (TG)n Simple_repeat Simple_repeat 2 44 0 13534 200 16 3 chr11 40762125 40766108 -108017364 + L1PB1 LINE L1 2114 6149 -2 22 80 0 0 chr11 40766790 40766840 -108016632 + AT_rich Low_complexity Low_complexity 1 50 0 217 340 21 21 chr11 40767212 40767309 -108016163 - MIR SINE MIR -74 188 92 4847 163 13 26 chr11 40767367 40768224 -108015248 - HSMAR2 DNA Mariner -101 1201 356 15729 178 19 4 chr11 40768261 40772125 -108011347 - L1PA11 LINE L1 -15 7597 3669 3073 265 39 54 chr11 40772180 40772489 -108010983 - L1PA11 LINE L1 -4877 2707 2395 195 69 0 0 chr11 40772489 40772518 -108010954 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3073 265 39 54 chr11 40772518 40773564 -108009908 - L1PA11 LINE L1 -5189 2395 9 2156 150 22 0 chr11 40773570 40773931 -108009541 - HSMAR2 DNA Mariner -933 369 1 23 0 0 0 chr11 40774588 40774611 -108008861 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr11 40775988 40776011 -108007461 + AT_rich Low_complexity Low_complexity 1 23 0 429 282 65 60 chr11 40776015 40776231 -108007241 - MIR SINE MIR 0 262 46 207 289 92 13 chr11 40776325 40776401 -108007071 - MIR SINE MIR -133 129 48 31 26 0 0 chr11 40776668 40776706 -108006766 + AT_rich Low_complexity Low_complexity 1 38 0 199 383 90 25 chr11 40777347 40777702 -108005770 + L2 LINE L2 1831 2208 -1106 610 299 185 40 chr11 40777719 40778163 -108005309 - L2 LINE L2 -2 3311 2804 334 326 107 46 chr11 40778174 40778634 -108004838 - MLT1J LTR MaLR 0 511 24 2572 105 0 0 chr11 40778853 40779204 -108004268 + THE1A LTR MaLR 2 352 -3 11103 107 4 6 chr11 40779204 40779892 -108003580 + THE1A-int LTR MaLR 8 695 -885 1115 193 143 69 chr11 40779892 40780311 -108003161 - LTR7 LTR ERV1 0 450 1 11103 107 4 6 chr11 40780311 40781197 -108002275 + THE1A-int LTR MaLR 695 1580 0 2351 112 23 0 chr11 40781197 40781544 -108001928 + THE1A LTR MaLR 1 355 0 284 389 11 11 chr11 40781562 40781737 -108001735 + L2 LINE L2 2203 2377 -937 275 57 0 0 chr11 40781750 40781785 -108001687 + MADE1 DNA Mariner 46 80 0 22 35 0 0 chr11 40781893 40781922 -108001550 + AT_rich Low_complexity Low_complexity 1 29 0 220 296 11 0 chr11 40781987 40782075 -108001397 + (CATA)n Simple_repeat Simple_repeat 4 92 0 1550 240 35 6 chr11 40782078 40782451 -108001021 - MLT2D LTR ERVL -40 480 1 1394 220 16 0 chr11 40782457 40782766 -108000706 - L1MC/D LINE L1 -2015 5770 5457 1592 220 28 21 chr11 40782767 40783199 -108000273 - L1MC/D LINE L1 -1127 5019 4585 300 186 0 0 chr11 40783259 40783318 -108000154 + (CTA)n Simple_repeat Simple_repeat 2 60 0 185 380 40 0 chr11 40783327 40783427 -108000045 + L2 LINE L2 2571 2674 -640 228 341 12 0 chr11 40783849 40783931 -107999541 + L2 LINE L2 3229 3311 -2 297 259 14 7 chr11 40785262 40785358 -107998114 + (TA)n Simple_repeat Simple_repeat 2 101 -44 1378 227 59 41 chr11 40785358 40785746 -107997726 + MSTD LTR MaLR 1 395 -1 297 259 14 7 chr11 40785746 40785792 -107997680 + (TA)n Simple_repeat Simple_repeat 101 145 0 1166 228 38 8 chr11 40786355 40786618 -107996854 + AluJo SINE Alu 5 275 -37 25 0 0 0 chr11 40786756 40786781 -107996691 + AT_rich Low_complexity Low_complexity 1 25 0 9848 189 65 34 chr11 40786980 40789328 -107994144 + L1M4c LINE L1 4 2424 -3960 1058 244 48 0 chr11 40789330 40789412 -107994060 + AluJb SINE Alu 38 115 -197 360 0 0 0 chr11 40789412 40789452 -107994020 + (TAA)n Simple_repeat Simple_repeat 2 41 0 1058 244 48 0 chr11 40789452 40789599 -107993873 + AluJb SINE Alu 115 278 -34 600 309 28 19 chr11 40789619 40789939 -107993533 + L1M4c LINE L1 2412 2734 -3648 * 2945 202 57 3 chr11 40789924 40790593 -107992879 + L1MB3 LINE L1 5479 6183 0 318 345 41 35 chr11 40790670 40790841 -107992631 - MER5A DNA MER1_type -1 188 17 25 0 0 0 chr11 40791045 40791070 -107992402 + AT_rich Low_complexity Low_complexity 1 25 0 1983 129 0 7 chr11 40791647 40791965 -107991507 + AluSx SINE Alu 1 312 0 181 309 55 0 chr11 40793361 40793416 -107990056 - L2 LINE L2 -8 3305 3248 411 322 103 21 chr11 40793880 40794113 -107989359 - MLT1K LTR MaLR -11 577 326 277 388 26 0 chr11 40795740 40795892 -107987580 + MIR SINE MIR 75 230 -32 913 180 92 15 chr11 40796019 40796253 -107987219 + L1MA6 LINE L1 6047 6300 0 1715 163 32 0 chr11 40796254 40796536 -107986936 - AluSx SINE Alu -21 291 1 29 28 0 0 chr11 40796857 40796893 -107986579 + AT_rich Low_complexity Low_complexity 1 36 0 267 370 110 0 chr11 40797032 40797178 -107986294 - MIR3 SINE MIR -18 190 29 310 261 0 0 chr11 40797242 40797307 -107986165 + MIR SINE MIR 113 177 -85 1437 207 24 52 chr11 40797309 40797469 -107986003 - MLT1A2 LTR MaLR -4 370 207 2037 141 3 0 chr11 40797469 40797773 -107985699 - AluSx SINE Alu -7 305 1 1437 207 24 52 chr11 40797773 40797991 -107985481 - MLT1A2 LTR MaLR -167 207 1 243 270 56 22 chr11 40797991 40798080 -107985392 + MIR SINE MIR 171 262 0 239 301 41 24 chr11 40800285 40800408 -107983064 + MIR SINE MIR 121 245 -17 398 214 61 10 chr11 40800425 40800523 -107982949 + MIR SINE MIR 160 262 0 1245 255 39 11 chr11 40800782 40801163 -107982309 + L1M4 LINE L1 3729 4120 -2026 415 224 0 0 chr11 40801188 40801264 -107982208 - FRAM SINE Alu -68 98 23 707 149 2 128 chr11 40801289 40801363 -107982109 - L1MD1 LINE L1 -1 6358 6276 2052 131 3 6 chr11 40801363 40801677 -107981795 + AluSp SINE Alu 1 313 0 707 149 2 128 chr11 40801677 40801688 -107981784 - L1MD1 LINE L1 -83 6276 6265 1223 94 0 6 chr11 40801688 40801869 -107981603 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 707 149 2 128 chr11 40801869 40801979 -107981493 - L1MD1 LINE L1 -94 6265 6071 865 227 60 14 chr11 40802044 40802326 -107981146 - L1M4 LINE L1 -3537 2609 2315 10099 188 24 7 chr11 40802345 40805580 -107977892 - L1MA3 LINE L1 -5 7719 4430 1914 104 7 174 chr11 40805581 40805994 -107977478 + LTR14B LTR ERVK 1 608 0 1271 220 39 3 chr11 40806000 40806305 -107977167 - L1MA3 LINE L1 -3135 4430 4115 498 204 35 0 chr11 40806315 40806428 -107977044 - L1MA3 LINE L1 -7440 125 9 27 87 0 0 chr11 40806841 40806910 -107976562 + AT_rich Low_complexity Low_complexity 1 69 0 1868 198 75 39 chr11 40807535 40808029 -107975443 + MER67D LTR ERV1 3 514 0 258 232 152 0 chr11 40808357 40808469 -107975003 + MER103 DNA DNA 26 154 -12 205 109 83 13 chr11 40809285 40809450 -107974022 + (TA)n Simple_repeat Simple_repeat 1 176 0 281 100 20 50 chr11 40809450 40809550 -107973922 + (TTATA)n Simple_repeat Simple_repeat 5 101 0 397 159 0 69 chr11 40809552 40809741 -107973731 + (TATAA)n Simple_repeat Simple_repeat 4 179 0 304 142 65 7 chr11 40809752 40809907 -107973565 + (TA)n Simple_repeat Simple_repeat 1 164 0 22 70 0 0 chr11 40809907 40809950 -107973522 + AT_rich Low_complexity Low_complexity 1 43 0 313 175 48 0 chr11 40809963 40810129 -107973343 + (TA)n Simple_repeat Simple_repeat 1 174 0 25 0 0 0 chr11 40810145 40810170 -107973302 + AT_rich Low_complexity Low_complexity 1 25 0 7332 95 32 3 chr11 40910170 40911318 -107872154 - L1P LINE L1 -1531 4615 3435 21 36 0 0 chr11 40911436 40911464 -107872008 + AT_rich Low_complexity Low_complexity 1 28 0 309 250 9 19 chr11 40911537 40911645 -107871827 + (TA)n Simple_repeat Simple_repeat 2 108 0 212 247 24 35 chr11 40911838 40911923 -107871549 + (TATATG)n Simple_repeat Simple_repeat 1 84 0 371 184 40 17 chr11 40911924 40912098 -107871374 + (TA)n Simple_repeat Simple_repeat 2 179 0 21 71 0 0 chr11 40912145 40912187 -107871285 + AT_rich Low_complexity Low_complexity 1 42 0 282 294 59 50 chr11 40913095 40913580 -107869892 - L1ME LINE L1 -635 5529 5041 276 265 20 10 chr11 40913957 40914059 -107869413 - LTR1 LTR ERV1 -1 784 682 289 293 40 0 chr11 40914243 40914342 -107869130 + MER115 DNA AcHobo 590 692 -1 243 341 15 7 chr11 40915541 40915676 -107867796 - L1ME LINE L1 -1959 4187 4052 3156 175 100 16 chr11 40916014 40916721 -107866751 - LTR1B LTR ERV1 -3 782 1 1435 84 0 0 chr11 40916809 40917000 -107866472 + LTR17 LTR ERV1 1 191 -589 230 20 41 41 chr11 40918123 40918172 -107865300 + (TTA)n Simple_repeat Simple_repeat 3 51 0 3029 74 2 5 chr11 40919426 40919829 -107863643 + L1PA8 LINE L1 5763 6164 -8 239 297 76 0 chr11 40920054 40920172 -107863300 + L1M4 LINE L1 3317 3443 -2703 323 301 79 64 chr11 40921110 40921515 -107861957 + L1ME LINE L1 541 951 -5119 1855 87 0 43 chr11 40922480 40922756 -107860716 - AluY SINE Alu -3 308 45 1994 204 34 9 chr11 40922983 40923424 -107860048 - LTR47A LTR ERVL 0 452 1 469 263 35 91 chr11 40924073 40924305 -107859167 + MIR SINE MIR 44 262 0 220 307 89 10 chr11 41024769 41024870 -107758602 - L2 LINE L2 -1279 2035 1927 351 330 80 24 chr11 41025139 41025427 -107758045 + L1M4 LINE L1 4488 4791 -1355 24 67 0 0 chr11 41025733 41025778 -107757694 + AT_rich Low_complexity Low_complexity 1 45 0 28 48 0 0 chr11 41025949 41025991 -107757481 + AT_rich Low_complexity Low_complexity 1 42 0 977 170 25 0 chr11 41026371 41026571 -107756901 - L1MA4 LINE L1 -9 6291 6087 38 22 0 0 chr11 41026701 41026746 -107756726 + AT_rich Low_complexity Low_complexity 1 45 0 235 167 19 0 chr11 41026792 41026846 -107756626 + (TTTA)n Simple_repeat Simple_repeat 4 58 0 * 444 144 50 56 chr11 41026819 41026999 -107756473 + (TA)n Simple_repeat Simple_repeat 1 179 0 483 270 29 59 chr11 41027013 41027217 -107756255 + LTR16A LTR ERVL 161 358 -92 345 24 0 0 chr11 41027351 41027393 -107756079 + (TG)n Simple_repeat Simple_repeat 2 43 0 2173 203 20 99 chr11 41027946 41028636 -107754836 + L1MC2 LINE L1 5544 6179 -165 283 202 24 0 chr11 41029022 41029106 -107754366 + (TA)n Simple_repeat Simple_repeat 2 87 0 251 330 0 18 chr11 41029309 41029421 -107754051 + HAL1b LINE L1 380 489 -859 4300 181 27 11 chr11 41029548 41030897 -107752575 + L1P4 LINE L1 4402 5775 -391 2636 89 96 5 chr11 41031402 41031807 -107751665 - LTR7 LTR ERV1 -8 442 1 595 242 0 23 chr11 41031968 41032096 -107751376 - FLAM_A SINE Alu -8 125 1 1932 134 29 13 chr11 41032979 41033285 -107750187 + AluSx SINE Alu 1 311 -1 185 62 0 31 chr11 41035246 41035278 -107748194 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 34 42 0 0 chr11 41035795 41035843 -107747629 + AT_rich Low_complexity Low_complexity 1 48 0 315 0 0 0 chr11 41036016 41036051 -107747421 + (TG)n Simple_repeat Simple_repeat 2 36 0 1172 253 108 50 chr11 41036090 41036652 -107746820 - MLT1G1 LTR MaLR 0 595 1 26 30 0 0 chr11 41036959 41036992 -107746480 + AT_rich Low_complexity Low_complexity 1 33 0 1154 86 0 0 chr11 41037360 41037511 -107745961 + AluSg/x SINE Alu 157 307 -5 517 347 31 5 chr11 41037542 41037735 -107745737 + MIR SINE MIR 51 248 -14 797 226 30 103 chr11 41038039 41038081 -107745391 - MLT2C1 LTR ERVL -20 377 333 378 0 0 0 chr11 41038081 41038123 -107745349 + (CA)n Simple_repeat Simple_repeat 2 43 0 797 226 30 103 chr11 41038123 41038487 -107744985 - MLT2C1 LTR ERVL -64 333 1 269 333 11 0 chr11 41038501 41038594 -107744878 + L2 LINE L2 3219 3312 -1 285 256 16 70 chr11 41039821 41039950 -107743522 + MER103 DNA DNA 12 133 -33 191 102 34 34 chr11 41040294 41040353 -107743119 + (TA)n Simple_repeat Simple_repeat 1 59 0 420 171 24 29 chr11 41040368 41040538 -107742934 + (TA)n Simple_repeat Simple_repeat 1 169 0 473 295 97 87 chr11 41041450 41041983 -107741489 + HAL1 LINE L1 843 1386 -1121 207 88 0 0 chr11 41041983 41042017 -107741455 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 473 295 97 87 chr11 41042017 41042206 -107741266 + HAL1 LINE L1 1386 1572 -935 270 357 24 8 chr11 41043701 41043827 -107739645 - L2 LINE L2 0 3313 3186 3298 134 7 31 chr11 41043980 41044519 -107738953 + MER1A DNA MER1_type 1 526 -1 321 89 0 0 chr11 41044659 41044704 -107738768 + (TG)n Simple_repeat Simple_repeat 1 45 0 207 349 0 12 chr11 41044793 41044876 -107738596 + MIR SINE MIR 75 156 -106 568 318 51 0 chr11 41045252 41045466 -107738006 + MLT1J2 LTR MaLR 22 246 -204 189 154 0 0 chr11 41045690 41045729 -107737743 + (CAGAGA)n Simple_repeat Simple_repeat 4 42 0 697 77 0 94 chr11 41045967 41046084 -107737388 - AluSc SINE Alu -131 178 73 977 65 0 0 chr11 41046084 41046208 -107737264 + AluY SINE Alu 181 304 -7 6469 162 46 35 chr11 41046303 41046531 -107736941 - HSMAR2 DNA Mariner -4 1298 1074 1471 106 53 46 chr11 41046531 41046814 -107736658 - L1MA2 LINE L1 0 6304 6020 6469 162 46 35 chr11 41046814 41047868 -107735604 - HSMAR2 DNA Mariner -228 1074 2 29 28 0 0 chr11 41048508 41048544 -107734928 + AT_rich Low_complexity Low_complexity 1 36 0 993 74 0 0 chr11 41048929 41049064 -107734408 + (GAAAA)n Simple_repeat Simple_repeat 2 136 0 208 333 0 73 chr11 41049453 41049576 -107733896 + L2 LINE L2 2898 3011 -261 465 353 40 0 chr11 41049735 41049908 -107733564 - MIR SINE MIR -14 248 69 182 423 72 0 chr11 41049970 41050081 -107733391 + L2 LINE L2 3154 3272 0 1227 175 66 83 chr11 41050204 41050552 -107732920 + MSTB1 LTR MaLR 83 424 -8 735 271 28 40 chr11 41050556 41050803 -107732669 - MER110 LTR ERV1 -189 302 59 388 264 74 25 chr11 41052778 41052939 -107730533 + MIR SINE MIR 3 176 -65 524 333 38 5 chr11 41053658 41053868 -107729604 - MIR SINE MIR -12 250 34 498 279 32 64 chr11 41053874 41054154 -107729318 - LTR37B LTR ERV1 0 468 198 24 0 0 0 chr11 41054201 41054225 -107729247 + AT_rich Low_complexity Low_complexity 1 24 0 568 234 198 25 chr11 41054410 41054679 -107728793 - MER52A LTR ERV1 -137 894 283 738 244 12 6 chr11 41054721 41054885 -107728587 - LTR28 LTR ERV1 -855 165 1 203 273 0 0 chr11 41054960 41055015 -107728457 - MIR SINE MIR -111 151 97 235 203 20 61 chr11 41055127 41055275 -107728197 + (TTATA)n Simple_repeat Simple_repeat 4 145 0 229 363 62 26 chr11 41055430 41055543 -107727929 - L2 LINE L2 -8 3264 3148 569 335 36 22 chr11 41056081 41056356 -107727116 + LTR16B LTR ERVL 134 412 -52 1377 124 9 0 chr11 41058298 41058516 -107724956 - L1PA13 LINE L1 -6 6157 5938 366 292 62 23 chr11 41058659 41058916 -107724556 - L1MC4a LINE L1 -1862 5946 5680 1362 202 31 87 chr11 41059859 41061212 -107722260 + L1MD3 LINE L1 5385 5651 -533 2455 147 28 14 chr11 41060365 41060787 -107722685 - MSTA LTR MaLR 0 428 1 1007 184 34 59 chr11 41060787 41060853 -107722619 + L1MB7 LINE L1 5827 5850 -334 2135 135 0 0 chr11 41060853 41061165 -107722307 + AluSx SINE Alu 1 312 0 1007 184 34 59 chr11 41061165 41061249 -107722223 + L1MB7 LINE L1 5850 5935 -249 451 148 12 0 chr11 41061267 41061348 -107722124 + L1MB7 LINE L1 6084 6165 -19 285 258 0 62 chr11 41061368 41061465 -107722007 - L2 LINE L2 -957 2357 2267 314 315 91 14 chr11 41061673 41061816 -107721656 - MIR SINE MIR -42 220 67 416 290 97 14 chr11 41061874 41062019 -107721453 + MER5B DNA MER1_type 1 157 -21 367 320 160 13 chr11 41063243 41063399 -107720073 + MER5A DNA MER1_type 10 188 -1 189 355 136 7 chr11 41064015 41064170 -107719302 + MIR3 SINE MIR 30 204 -4 218 222 0 56 chr11 41065453 41065507 -107717965 - MIR SINE MIR -89 173 123 27 0 0 0 chr11 41065928 41065955 -107717517 + AT_rich Low_complexity Low_complexity 1 27 0 322 247 68 49 chr11 41066259 41066541 -107716931 - L1MC5 LINE L1 -188 7854 7455 2581 63 209 165 chr11 41066543 41067142 -107716330 + LTR12 LTR ERV1 90 714 0 1016 47 0 0 chr11 41067245 41067372 -107716100 - L1PA5 LINE L1 -174 5980 5854 1213 48 0 42 chr11 41067372 41067536 -107715936 + L1PA5 LINE L1 5989 6146 -8 647 261 55 68 chr11 41068103 41068651 -107714821 - L1MC4 LINE L1 -394 7442 6962 199 373 46 7 chr11 41068707 41068827 -107714645 + MIR SINE MIR 16 137 -71 483 287 135 22 chr11 41070136 41070366 -107713106 + MIR SINE MIR 3 258 -4 207 0 0 0 chr11 41071441 41071464 -107712008 + (CA)n Simple_repeat Simple_repeat 2 24 0 217 313 0 15 chr11 41072636 41072703 -107710769 - L2 LINE L2 -193 3079 3014 1828 240 113 15 chr11 41074323 41075436 -107708036 - L1MCa LINE L1 -3317 3109 1756 1522 137 0 65 chr11 41075436 41075739 -107707733 - AluSx SINE Alu 0 312 36 1828 240 113 15 chr11 41075739 41075939 -107707533 - L1MCa LINE L1 -4670 1756 1577 898 164 52 19 chr11 41076304 41076517 -107706955 + L1MA7 LINE L1 6072 6291 0 23 78 0 0 chr11 41076517 41076568 -107706904 + AT_rich Low_complexity Low_complexity 1 51 0 4254 33 0 0 chr11 41076828 41077349 -107706123 + L1P LINE L1 4780 5300 -846 546 342 43 18 chr11 41077491 41077766 -107705706 - HERV16 LTR ERVL -2083 2913 2658 952 311 62 42 chr11 41077979 41078499 -107704973 - HERV16 LTR ERVL -2623 2373 1844 1100 135 39 22 chr11 41078603 41078832 -107704640 + L1M4c LINE L1 2101 2333 -4051 480 220 9 0 chr11 41078834 41078943 -107704529 + L1M4c LINE L1 3783 3892 -2490 1434 189 49 40 chr11 41078944 41079314 -107704158 - THE1C LTR MaLR 0 375 3 1926 153 3 6 chr11 41079316 41079636 -107703836 - THE1C-int LTR MaLR 0 1651 1333 29 0 0 0 chr11 41080322 41080351 -107703121 + AT_rich Low_complexity Low_complexity 1 29 0 228 100 0 0 chr11 41081019 41081049 -107702423 + MLT2B2 LTR ERVL 486 515 0 1787 171 0 23 chr11 41081103 41081407 -107702065 + AluJb SINE Alu 1 297 -15 212 281 0 0 chr11 41081420 41081477 -107701995 + (TA)n Simple_repeat Simple_repeat 2 58 0 1751 166 27 14 chr11 41081562 41081858 -107701614 - AluSx SINE Alu -12 300 1 347 119 102 0 chr11 41082250 41082309 -107701163 - THE1C LTR MaLR -310 65 1 1804 109 15 0 chr11 41082309 41082576 -107700896 - THE1C-int LTR MaLR 0 1580 1310 8397 103 17 4 chr11 41082581 41083753 -107699719 - HERVL LTR ERVL -2000 3654 2468 278 288 198 12 chr11 41083853 41084149 -107699323 - L1ME LINE L1 -545 5559 5208 238 253 0 38 chr11 41084269 41084348 -107699124 - L1ME LINE L1 -5953 117 42 11809 102 17 6 chr11 41085207 41086946 -107696526 - HERV9 LTR ERV1 -6082 2317 559 2360 268 73 17 chr11 41087144 41088260 -107695212 - L1M4 LINE L1 -1062 5084 3906 4286 156 52 67 chr11 41088394 41088618 -107694854 - Tigger2 DNA MER2_type -6 2712 2486 1846 157 3 3 chr11 41088618 41088905 -107694567 - AluSx SINE Alu -25 287 1 4286 156 52 67 chr11 41088905 41089579 -107693893 - Tigger2 DNA MER2_type -232 2486 1827 398 191 36 73 chr11 41089684 41089794 -107693678 + LTR38B LTR ERV1 8 113 -497 1142 232 14 7 chr11 41089817 41090101 -107693371 + L1M4c LINE L1 4390 4675 -1707 247 324 198 28 chr11 41091392 41091574 -107691898 - L3 LINE CR1 -71 1506 1294 718 143 14 43 chr11 41091620 41091760 -107691712 - THE1C LTR MaLR 0 375 240 6847 124 6 4 chr11 41091872 41092879 -107690593 + THE1C-int LTR MaLR 572 1580 0 2088 149 16 19 chr11 41092879 41093255 -107690217 + THE1C LTR MaLR 1 375 0 1209 196 26 22 chr11 41093257 41093527 -107689945 + AluJo SINE Alu 22 292 -20 1468 197 7 0 chr11 41093527 41093816 -107689656 - L1PA15-16 LINE L1 -4309 2540 2250 3464 174 29 18 chr11 41093919 41095126 -107688346 + L1P5 LINE L1 4787 6005 -382 339 269 34 50 chr11 41095297 41095416 -107688056 - LTR16A LTR ERVL -277 173 57 5218 161 25 38 chr11 41096559 41097531 -107685941 + L1PA15-16 LINE L1 979 1937 -4912 1472 165 11 4 chr11 41097531 41097798 -107685674 - AluSp SINE Alu -16 297 29 280 283 106 9 chr11 41098041 41098154 -107685318 + MIR SINE MIR 129 252 -10 252 59 0 0 chr11 41098770 41098804 -107684668 + (CA)n Simple_repeat Simple_repeat 2 35 0 208 169 68 51 chr11 41099297 41099356 -107684116 - L2 LINE L2 -815 2499 2440 460 159 0 0 chr11 41099639 41099708 -107683764 + Tigger2 DNA MER2_type 1 69 -2649 * 2180 201 20 11 chr11 41099692 41100140 -107683332 + Tigger2 DNA MER2_type 2267 2718 0 5597 221 25 28 chr11 41100989 41102457 -107681015 - L1 LINE L1 -1173 4973 3510 1219 237 131 73 chr11 41102589 41103424 -107680048 + L1ME2 LINE L1 5264 6152 -12 432 252 19 0 chr11 41103637 41103740 -107679732 + L1MD2 LINE L1 6028 6132 -227 2768 124 68 177 chr11 41103843 41104286 -107679186 + LTR12 LTR ERV1 37 107 -607 2541 51 0 3 chr11 41104286 41104598 -107678874 - AluY SINE Alu 0 311 1 2768 124 68 177 chr11 41104598 41105147 -107678325 + LTR12 LTR ERV1 107 714 0 688 168 20 13 chr11 41105147 41105279 -107678193 + HERV9 LTR ERV1 40 172 -8227 360 228 130 118 chr11 41105981 41106123 -107677349 + LTR16A1 LTR ERVL 1 140 -317 869 148 26 26 chr11 41106123 41106312 -107677160 + MER53 DNA DNA 1 189 0 360 228 130 118 chr11 41106312 41106507 -107676965 + LTR16A1 LTR ERVL 140 342 -115 797 132 0 0 chr11 41106507 41106628 -107676844 - MLT2B1 LTR ERVL 0 520 400 417 200 70 43 chr11 41106615 41106730 -107676742 + LTR16A1 LTR ERVL 340 457 0 * 327 288 52 44 chr11 41106730 41106959 -107676513 + HERV16 LTR ERVL 1 231 -4765 24 0 0 0 chr11 41108021 41108045 -107675427 + AT_rich Low_complexity Low_complexity 1 24 0 660 333 122 23 chr11 41108567 41108912 -107674560 - L3 LINE CR1 -12 1565 1187 720 223 59 9 chr11 41109125 41109345 -107674127 - L1M4 LINE L1 -2263 3883 3653 1748 169 52 27 chr11 41109345 41109711 -107673761 + THE1C LTR MaLR 1 375 0 4449 206 35 4 chr11 41109713 41110746 -107672726 + THE1C-int LTR MaLR 4 1071 -580 358 95 0 12 chr11 41110917 41110978 -107672494 + MLT2A2 LTR ERVL 404 453 0 3851 112 50 10 chr11 41111523 41112142 -107671330 + LTR9B LTR ERV1 1 644 0 22 56 0 0 chr11 41112407 41112443 -107671029 + AT_rich Low_complexity Low_complexity 1 36 0 381 154 88 13 chr11 41112803 41112929 -107670543 + L1MD3 LINE L1 6915 7099 -705 328 256 47 0 chr11 41112990 41113076 -107670396 + MLT1F1 LTR MaLR 36 125 -442 396 148 49 0 chr11 41113076 41113157 -107670315 + L1MD3 LINE L1 7404 7488 -507 214 366 73 30 chr11 41114556 41114720 -107668752 + L2 LINE L2 3009 3179 -93 511 162 18 9 chr11 41114980 41115091 -107668381 - L1PA16 LINE L1 -1 6165 6054 1203 212 172 109 chr11 41115098 41115823 -107667649 + LTR28 LTR ERV1 1 967 -53 386 256 8 40 chr11 41115863 41115988 -107667484 + LTR28 LTR ERV1 900 1020 0 1600 180 12 19 chr11 41115990 41116312 -107667160 - L1PA16 LINE L1 -110 6056 5737 800 224 55 15 chr11 41116432 41116633 -107666839 - MER49 LTR ERV1 -714 209 1 248 81 0 0 chr11 41116634 41116671 -107666801 - MER39 LTR ERV1 -292 415 379 * 346 115 213 0 chr11 41116669 41116730 -107666742 - MER39B LTR ERV1 -579 74 1 200 35 35 0 chr11 41117042 41117071 -107666401 + (TTG)n Simple_repeat Simple_repeat 2 31 0 1737 149 14 3 chr11 41120341 41120629 -107662843 + AluSx SINE Alu 1 291 -21 28 102 0 0 chr11 41120801 41120899 -107662573 + AT_rich Low_complexity Low_complexity 1 98 0 21 36 0 0 chr11 41121036 41121064 -107662408 + AT_rich Low_complexity Low_complexity 1 28 0 312 127 0 0 chr11 41121084 41121139 -107662333 + (TA)n Simple_repeat Simple_repeat 2 56 0 1089 222 43 0 chr11 41121255 41121512 -107661960 - L1 LINE L1 -2217 3929 3662 * 5288 118 22 0 chr11 41121508 41122273 -107661199 - THE1B-int LTR MaLR -798 782 1 879 184 46 83 chr11 41122273 41122347 -107661125 - THE1B LTR MaLR 0 364 289 1818 151 0 0 chr11 41122347 41122625 -107660847 + AluSg SINE Alu 33 310 0 879 184 46 83 chr11 41122625 41122767 -107660705 - THE1B LTR MaLR -75 289 156 4324 219 11 26 chr11 41122878 41123284 -107660188 + L1M4c LINE L1 25 435 -5949 879 273 77 20 chr11 41123284 41123793 -107659679 - MER34 LTR ERV1 0 542 5 4324 219 11 26 chr11 41123793 41124362 -107659110 + L1M4c LINE L1 435 986 -5398 879 124 14 14 chr11 41124490 41124670 -107658802 + AluSg/x SINE Alu 154 312 0 705 162 14 28 chr11 41124677 41124819 -107658653 + FLAM_C SINE Alu 1 140 -3 399 254 99 16 chr11 41124820 41125031 -107658441 + L1ME2 LINE L1 5203 5429 -743 2873 130 60 0 chr11 41125067 41125537 -107657935 - MER75 DNA T2_type -16 498 1 1934 228 80 49 chr11 41125544 41126223 -107657249 + L1ME2 LINE L1 5443 6142 -22 1812 168 48 20 chr11 41126613 41126803 -107656669 - THE1B LTR MaLR 0 364 158 3033 50 0 0 chr11 41126803 41127181 -107656291 + L1PA5 LINE L1 5773 6150 -4 1812 168 48 20 chr11 41127181 41127342 -107656130 - THE1B LTR MaLR -206 158 3 773 228 0 0 chr11 41127567 41127725 -107655747 - AluJo SINE Alu -4 298 141 533 213 44 44 chr11 41127736 41127759 -107655713 - AluJo SINE Alu -176 136 114 2134 123 118 18 chr11 41127759 41127782 -107655690 - MSTA LTR MaLR 0 428 409 3280 200 19 77 chr11 41127782 41128811 -107654661 + LTR5 LTR ERVK 1 969 0 2134 123 118 18 chr11 41128811 41129176 -107654296 - MSTA LTR MaLR -19 409 1 533 213 44 44 chr11 41129176 41129288 -107654184 - AluJo SINE Alu -197 115 1 662 133 49 28 chr11 41129633 41129776 -107653696 - MLT1B LTR MaLR -191 199 54 3019 230 37 32 chr11 41129804 41131255 -107652217 + L1MC1 LINE L1 4346 5812 -521 1677 163 9 16 chr11 41131255 41131575 -107651897 - MER31A LTR ERV1 0 485 168 1592 186 30 0 chr11 41131675 41131971 -107651501 + L1MC1 LINE L1 6001 6305 -28 22 56 0 0 chr11 41132281 41132317 -107651155 + AT_rich Low_complexity Low_complexity 1 36 0 323 321 97 26 chr11 41132472 41133018 -107650454 + L1M4 LINE L1 3072 3673 -2473 1696 174 8 110 chr11 41133027 41133401 -107650071 + Tigger3(Golem) DNA MER2_type 9 3024 -5 391 274 18 6 chr11 41133401 41133565 -107649907 + (TA)n Simple_repeat Simple_repeat 1 166 0 324 314 6 30 chr11 41133709 41133878 -107649594 + L1M4 LINE L1 4531 4695 -1451 457 295 69 20 chr11 41135705 41136095 -107647377 - L1M4 LINE L1 -2827 3319 2911 23 0 0 0 chr11 41137707 41137730 -107645742 + AT_rich Low_complexity Low_complexity 1 23 0 25 65 0 0 chr11 41137997 41138043 -107645429 + AT_rich Low_complexity Low_complexity 1 46 0 223 337 51 10 chr11 41138149 41138247 -107645225 + MIR SINE MIR 31 132 -130 23 33 0 0 chr11 41139019 41139049 -107644423 + AT_rich Low_complexity Low_complexity 1 30 0 298 302 47 47 chr11 41140285 41140477 -107642995 - MIR SINE MIR -2 260 69 27 73 0 0 chr11 41140513 41140568 -107642904 + AT_rich Low_complexity Low_complexity 1 55 0 198 0 0 0 chr11 41140717 41140739 -107642733 + (GGGAGA)n Simple_repeat Simple_repeat 3 24 0 453 294 27 10 chr11 41141716 41142006 -107641466 + L1M4b LINE L1 1331 1757 -5190 858 249 67 45 chr11 41142025 41142199 -107641273 - L1M4 LINE L1 -2828 3318 3149 1849 188 81 2 chr11 41142199 41142592 -107640880 + MSTA LTR MaLR 1 424 -4 858 249 67 45 chr11 41142592 41143081 -107640391 - L1M4 LINE L1 -2997 3149 2584 21 0 0 0 chr11 41143128 41143149 -107640323 + AT_rich Low_complexity Low_complexity 1 21 0 434 295 72 34 chr11 41143244 41143630 -107639842 + L1M4b LINE L1 1988 2388 -4750 561 202 0 9 chr11 41143646 41143755 -107639717 - FRAM SINE Alu -25 151 44 223 186 39 49 chr11 41145728 41145830 -107637642 + (CATATA)n Simple_repeat Simple_repeat 4 104 0 691 160 7 62 chr11 41145844 41145988 -107637484 - AluJo SINE Alu -176 136 1 365 36 0 55 chr11 41146104 41146159 -107637313 - LTR14A LTR ERVK -292 52 1 1572 251 106 22 chr11 41147220 41147671 -107635801 + MLT1F1 LTR MaLR 1 489 -78 329 93 19 0 chr11 41147902 41147956 -107635516 + (CA)n Simple_repeat Simple_repeat 2 56 0 5869 98 25 8 chr11 41148277 41149275 -107634197 - L1PA11 LINE L1 -1 6173 5156 32 0 0 0 chr11 41149405 41149437 -107634035 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr11 41150514 41150543 -107632929 + AT_rich Low_complexity Low_complexity 1 29 0 1907 214 30 14 chr11 41151006 41151444 -107632028 - MLT-int LTR MaLR -39 1696 900 2081 138 51 28 chr11 41151951 41152307 -107631165 - THE1B LTR MaLR 0 364 1 547 85 0 0 chr11 41152307 41152389 -107631083 - THE1B-int LTR MaLR 0 1580 1499 839 201 24 6 chr11 41152772 41152941 -107630531 - MER5B DNA MER1_type -1 177 6 1226 273 25 66 chr11 41153035 41153477 -107629995 - MLT1D LTR MaLR -9 496 76 2055 147 0 6 chr11 41153477 41153791 -107629681 + AluSx SINE Alu 1 312 0 1226 273 25 66 chr11 41153791 41153865 -107629607 - MLT1D LTR MaLR -429 76 1 2530 57 0 16 chr11 41154386 41154702 -107628770 + AluY SINE Alu 1 311 0 22 56 0 0 chr11 41155020 41155056 -107628416 + AT_rich Low_complexity Low_complexity 1 36 0 331 296 23 15 chr11 41156099 41156231 -107627241 + MER94 DNA DNA 2 134 0 271 204 17 0 chr11 41156819 41156885 -107626587 + L1MB3 LINE L1 5716 5779 -387 11838 196 31 16 chr11 41156894 41162626 -107620846 + L1PA13 LINE L1 1 5981 -833 2812 7 0 0 chr11 41162626 41162935 -107620537 + AluYa5 SINE Alu 1 309 -2 11838 196 31 16 chr11 41162935 41163782 -107619690 + L1PA13 LINE L1 5981 6814 0 891 126 13 0 chr11 41163775 41163926 -107619546 + L1MB3 LINE L1 5769 5921 -262 * 213 313 36 68 chr11 41164379 41164571 -107618901 - L2 LINE L2 -33 3280 3095 188 299 21 31 chr11 41164951 41165048 -107618424 - MIR3 SINE MIR -3 205 110 291 316 177 6 chr11 41166717 41166875 -107616597 + L3 LINE CR1 1308 1492 -85 439 288 36 45 chr11 41167284 41167506 -107615966 + MIR SINE MIR 43 262 0 25 31 0 0 chr11 41168263 41168295 -107615177 + AT_rich Low_complexity Low_complexity 1 32 0 1934 128 3 3 chr11 41168904 41169219 -107614253 - AluSx SINE Alu 0 315 1 201 74 0 0 chr11 41169400 41169427 -107614045 + (TATG)n Simple_repeat Simple_repeat 4 30 0 22 0 0 0 chr11 41170059 41170081 -107613391 + AT_rich Low_complexity Low_complexity 1 22 0 246 323 182 27 chr11 41170236 41170456 -107613016 - L2 LINE L2 0 3272 3019 1406 218 3 7 chr11 41170490 41170774 -107612698 + AluJb SINE Alu 1 283 -29 216 97 0 0 chr11 41170790 41170821 -107612651 + (TA)n Simple_repeat Simple_repeat 1 31 0 232 312 37 28 chr11 41170925 41171034 -107612438 - L2 LINE L2 -90 3223 3114 1286 116 0 32 chr11 41171099 41171289 -107612183 + AluSx SINE Alu 1 184 -128 232 264 81 0 chr11 41171350 41171437 -107612035 + LTR37A LTR ERV1 51 144 -282 2469 223 31 50 chr11 41171451 41172295 -107611177 + L1 LINE L1 2621 3448 -2698 1504 115 0 5 chr11 41172300 41172509 -107610963 + AluSx SINE Alu 23 230 -82 1269 326 110 36 chr11 41172510 41173372 -107610100 - L2 LINE L2 -534 2780 1810 2396 87 0 0 chr11 41173372 41173683 -107609789 + AluY SINE Alu 1 311 0 1269 326 110 36 chr11 41173683 41173970 -107609502 - L2 LINE L2 -1504 1810 1546 642 327 140 24 chr11 41173995 41174451 -107609021 - L2 LINE L2 -2576 738 230 984 170 53 11 chr11 41174601 41174789 -107608683 - L1PB4 LINE L1 0 6156 5961 3676 61 20 57 chr11 41174837 41175224 -107608248 - L1PA7 LINE L1 0 6154 5791 2385 97 0 0 chr11 41175224 41175535 -107607937 - AluY SINE Alu 0 311 1 3676 61 20 57 chr11 41175535 41175691 -107607781 - L1PA7 LINE L1 -363 5791 5631 1315 243 91 19 chr11 41176071 41176499 -107606973 + MLT1C LTR MaLR 9 467 0 22 56 0 19 chr11 41178073 41178115 -107605357 + AT_rich Low_complexity Low_complexity 1 43 -10 932 168 0 29 chr11 41178115 41178285 -107605187 - L1MA3 LINE L1 -1 6304 6140 1505 190 32 32 chr11 41178285 41178595 -107604877 - AluJb SINE Alu -2 310 1 932 168 0 29 chr11 41178595 41178632 -107604840 - L1MA3 LINE L1 -165 6140 6103 22 56 0 19 chr11 41178632 41178643 -107604829 + AT_rich Low_complexity Low_complexity 43 53 0 189 368 61 0 chr11 41178649 41178763 -107604709 - L2 LINE L2 -1 3312 3192 557 66 0 0 chr11 41179069 41179145 -107604327 + AluSc SINE Alu 218 293 -16 1672 188 3 14 chr11 41179413 41179705 -107603767 + AluJb SINE Alu 1 289 -23 312 305 61 70 chr11 41179982 41180326 -107603146 + L1M4 LINE L1 2280 2620 -3526 1232 234 66 46 chr11 41180374 41180921 -107602551 - L1MEc LINE L1 -5324 1072 515 240 250 92 0 chr11 41180925 41181001 -107602471 - L1MEc LINE L1 -5855 541 459 605 313 4 30 chr11 41181029 41181262 -107602210 - L1MEc LINE L1 -6127 269 43 3029 274 123 8 chr11 41181406 41182637 -107600835 - L1MC4 LINE L1 -174 7868 6496 408 182 0 25 chr11 41182652 41182773 -107600699 + (TA)n Simple_repeat Simple_repeat 2 119 0 236 246 0 16 chr11 41183229 41183290 -107600182 + GA-rich Low_complexity Low_complexity 4 63 0 2929 164 33 74 chr11 41184769 41185488 -107597984 - LTR8 LTR ERV1 -1 690 1 803 223 47 56 chr11 41186971 41187186 -107596286 + MER58A DNA MER1_type 6 218 -6 224 227 50 17 chr11 41188260 41188379 -107595093 + (TA)n Simple_repeat Simple_repeat 1 123 0 634 182 9 0 chr11 41188384 41188494 -107594978 + AluJo SINE Alu 124 234 -78 460 343 15 15 chr11 41189050 41189254 -107594218 - MIR SINE MIR 0 262 59 22 0 0 0 chr11 41189382 41189404 -107594068 + AT_rich Low_complexity Low_complexity 1 22 0 1997 143 32 19 chr11 41189664 41190034 -107593438 - THE1C LTR MaLR 0 375 1 1364 249 100 36 chr11 41191148 41191617 -107591855 + LTR40a LTR ERVL 1 499 -20 25 0 0 0 chr11 41191619 41191644 -107591828 + AT_rich Low_complexity Low_complexity 1 25 0 457 232 81 20 chr11 41191827 41192025 -107591447 - L1ME4a LINE L1 -224 5897 5688 1003 96 32 6 chr11 41193477 41193633 -107589839 - L1PA13 LINE L1 0 6163 6004 4075 140 19 7 chr11 41193633 41194306 -107589166 + MER50 LTR ERV1 3 683 -51 4275 152 10 48 chr11 41194314 41195014 -107588458 - L1PA12 LINE L1 -156 6009 5325 276 70 0 0 chr11 41195014 41195057 -107588415 - AluSp/q SINE Alu -4 299 257 4275 152 10 48 chr11 41195057 41195450 -107588022 - L1PA12 LINE L1 -840 5325 4918 228 229 209 38 chr11 41195450 41195555 -107587917 - MER67D LTR ERV1 -15 499 377 194 125 0 25 chr11 41195557 41195597 -107587875 + (TTTCC)n Simple_repeat Simple_repeat 2 40 0 1194 216 24 76 chr11 41195706 41196034 -107587438 - MER67D LTR ERV1 -203 311 1 2318 50 0 7 chr11 41196844 41197123 -107586349 - AluY SINE Alu -22 289 13 24 67 0 0 chr11 41197310 41197355 -107586117 + AT_rich Low_complexity Low_complexity 1 45 0 26 50 0 0 chr11 41197365 41197405 -107586067 + AT_rich Low_complexity Low_complexity 1 40 0 234 289 0 26 chr11 41198897 41198973 -107584499 + (TATG)n Simple_repeat Simple_repeat 3 76 0 239 186 0 0 chr11 41199219 41199262 -107584210 - MER67C LTR ERV1 -435 275 233 24 0 0 0 chr11 41200931 41200955 -107582517 + AT_rich Low_complexity Low_complexity 1 24 0 5963 36 1 1 chr11 41201356 41202077 -107581395 - L1PA4 LINE L1 -6 6149 5429 25 0 0 0 chr11 41202458 41202483 -107580989 + AT_rich Low_complexity Low_complexity 1 25 0 964 348 112 16 chr11 41202611 41203449 -107580023 + L2 LINE L2 416 1334 -1980 311 276 32 32 chr11 41203571 41203694 -107579778 - L1M4 LINE L1 -1962 4184 4062 312 316 12 42 chr11 41204209 41204377 -107579095 - MLT2E LTR ERVL -419 209 47 487 332 38 21 chr11 41204871 41205109 -107578363 - ERVL LTR ERVL -515 5249 5008 2185 305 102 24 chr11 41205165 41205798 -107577674 - ERVL LTR ERVL -923 4841 4096 2061 128 3 3 chr11 41205798 41206104 -107577368 + AluSc SINE Alu 1 306 -3 2185 305 102 24 chr11 41206104 41206504 -107576968 - ERVL LTR ERVL -1668 4096 3728 4146 174 52 38 chr11 41206552 41207454 -107576018 - L1MA7 LINE L1 -2 6289 5375 5468 251 35 59 chr11 41207458 41209294 -107574178 - L1M4 LINE L1 -1924 5641 3763 1552 111 4 4 chr11 41209294 41209520 -107573952 - AluSg/x SINE Alu -7 305 80 5468 251 35 59 chr11 41209520 41209959 -107573513 - L1M4 LINE L1 -3802 3763 3441 2436 75 3 0 chr11 41209959 41210266 -107573206 - AluY SINE Alu -2 309 2 5468 251 35 59 chr11 41210266 41210612 -107572860 - L1M4 LINE L1 -4124 3441 3088 1319 318 103 56 chr11 41210661 41211708 -107571764 - ERVL LTR ERVL -2293 3192 2097 858 314 57 63 chr11 41211711 41212360 -107571112 - ERVL LTR ERVL -3891 1873 1229 23 0 0 0 chr11 41212602 41212625 -107570847 + AT_rich Low_complexity Low_complexity 1 23 0 258 347 17 23 chr11 41213285 41213461 -107570011 - L1MC/D LINE L1 -2260 5548 5374 195 69 0 0 chr11 41213482 41213511 -107569961 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2515 133 16 23 chr11 41215045 41215482 -107567990 - L1M2 LINE L1 -481 5819 5386 1955 179 21 23 chr11 41215484 41215921 -107567551 + L1MA8 LINE L1 5853 6288 -3 2749 10 0 3 chr11 41216199 41216511 -107566961 + AluYa5 SINE Alu 1 311 0 309 244 25 17 chr11 41216752 41216871 -107566601 + CT-rich Low_complexity Low_complexity 1 120 0 288 190 6 34 chr11 41216994 41217351 -107566121 + (TA)n Simple_repeat Simple_repeat 1 346 0 405 201 40 23 chr11 41217365 41217539 -107565933 + (TA)n Simple_repeat Simple_repeat 2 178 0 225 0 0 0 chr11 41217542 41217567 -107565905 + (CA)n Simple_repeat Simple_repeat 2 26 0 22 35 0 0 chr11 41218618 41218647 -107564825 + AT_rich Low_complexity Low_complexity 1 29 0 551 352 90 39 chr11 41218783 41219387 -107564085 + L2 LINE L2 2679 3312 -1 404 382 145 27 chr11 41220324 41221329 -107562143 + L2 LINE L2 310 1433 -1881 22 35 0 0 chr11 41221565 41221594 -107561878 + AT_rich Low_complexity Low_complexity 1 29 0 486 274 57 28 chr11 41222514 41222726 -107560746 - MER20 DNA MER1_type 0 219 2 2143 102 10 0 chr11 41223021 41223325 -107560147 - AluSp SINE Alu -2 311 5 23 0 0 0 chr11 41223601 41223624 -107559848 + AT_rich Low_complexity Low_complexity 1 23 0 308 318 111 8 chr11 41224010 41224136 -107559336 - L2 LINE L2 -2 3311 3173 1392 205 3 30 chr11 41226651 41226953 -107556519 + AluJo SINE Alu 1 294 -18 996 181 0 82 chr11 41227426 41227538 -107555934 + AluJo SINE Alu 75 195 -136 4086 161 70 58 chr11 41227538 41228597 -107554875 + MER11C LTR ERVK 1 1071 0 996 181 0 82 chr11 41228597 41228760 -107554712 + AluJo SINE Alu 195 331 0 1863 154 0 3 chr11 41229000 41229286 -107554186 - AluSx SINE Alu -27 285 1 21 0 0 0 chr11 41229481 41229502 -107553970 + AT_rich Low_complexity Low_complexity 1 21 0 180 377 48 54 chr11 41229954 41230121 -107553351 + MIR SINE MIR 19 184 -78 25 51 0 0 chr11 41230191 41230230 -107553242 + AT_rich Low_complexity Low_complexity 1 39 0 33 100 0 0 chr11 41230367 41230477 -107552995 + AT_rich Low_complexity Low_complexity 1 110 0 555 164 12 6 chr11 41230484 41230734 -107552738 + AluJ SINE Alu 1 312 0 22 70 0 0 chr11 41230737 41230780 -107552692 + AT_rich Low_complexity Low_complexity 1 43 0 323 318 71 35 chr11 41231014 41231212 -107552260 - L1ME LINE L1 -409 5712 5508 333 353 97 35 chr11 41231460 41231718 -107551754 + HAL1 LINE L1 450 723 -1784 487 291 204 18 chr11 41231914 41232302 -107551170 - LTR50 LTR ERVL -106 689 230 307 314 53 35 chr11 41232433 41232602 -107550870 + HAL1 LINE L1 872 1043 -1464 911 87 0 0 chr11 41232606 41232733 -107550739 + AluY SINE Alu 184 310 -1 323 353 50 7 chr11 41233351 41233490 -107549982 + MIR3 SINE MIR 48 192 -16 203 143 0 24 chr11 41234156 41234198 -107549274 + (GAAA)n Simple_repeat Simple_repeat 2 42 0 2023 170 13 16 chr11 41235022 41235398 -107548074 - THE1C LTR MaLR 0 375 1 9059 138 47 5 chr11 41235398 41236914 -107546558 - THE1C-int LTR MaLR 0 1580 1 1292 169 93 65 chr11 41236914 41237268 -107546204 - THE1C LTR MaLR 0 364 1 1123 211 24 16 chr11 41237270 41237517 -107545955 + AluJb SINE Alu 5 253 -59 312 108 14 27 chr11 41237517 41237591 -107545881 + (TA)n Simple_repeat Simple_repeat 2 74 0 24 32 0 0 chr11 41237664 41237695 -107545777 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr11 41238182 41238208 -107545264 + AT_rich Low_complexity Low_complexity 1 26 0 227 298 0 0 chr11 41241564 41241649 -107541823 + (TGGA)n Simple_repeat Simple_repeat 1 85 0 231 156 89 0 chr11 41242071 41242116 -107541356 - MIR SINE MIR -49 213 165 322 320 92 98 chr11 41242292 41242629 -107540843 - L1ME3A LINE L1 0 6588 6254 826 322 27 24 chr11 41242682 41243254 -107540218 - L1ME3A LINE L1 -464 6124 5544 253 261 61 33 chr11 41243586 41243766 -107539706 - L1ME3A LINE L1 -3528 3036 2852 329 328 0 16 chr11 41245095 41245223 -107538249 + MLT1I LTR MaLR 284 409 0 3240 255 34 43 chr11 41245475 41246647 -107536825 - L1ME3A LINE L1 -4882 1163 3 266 227 55 45 chr11 41247417 41247527 -107535945 - MER3 DNA MER1_type -5 204 94 324 83 0 0 chr11 41247691 41247739 -107535733 + (CA)n Simple_repeat Simple_repeat 1 48 0 265 180 0 0 chr11 41247803 41247841 -107535631 - MSTB2 LTR MaLR 0 428 388 1646 160 72 39 chr11 41247841 41248204 -107535268 + THE1C LTR MaLR 1 375 0 265 180 0 0 chr11 41248204 41248215 -107535257 - MSTB2 LTR MaLR -39 389 379 5348 160 21 49 chr11 41248215 41249241 -107534231 + THE1C-int LTR MaLR 12 1009 -571 3794 69 0 243 chr11 41249244 41250153 -107533319 + LTR12 LTR ERV1 1 688 0 20094 103 22 8 chr11 41250153 41253086 -107530386 + HERV9 LTR ERV1 1 2972 -5427 1298 140 23 5 chr11 41253085 41253306 -107530166 + HERV9 LTR ERV1 4756 4980 -3419 * 2054 115 11 17 chr11 41253312 41253659 -107529813 + HERV17 LTR ERV1 703 1047 -7579 1932 103 2 16 chr11 41253648 41254073 -107529399 + HERV17 LTR ERV1 1275 1740 -5156 * 5706 92 5 0 chr11 41254070 41254841 -107528631 + HERV17 LTR ERV1 7625 8399 0 1505 59 106 94 chr11 41254841 41255097 -107528375 + LTR12 LTR ERV1 1 259 -455 342 265 8 0 chr11 41255097 41255214 -107528258 + LTR30 LTR ERV1 526 643 -79 1649 141 3 63 chr11 41255214 41255727 -107527745 + LTR12 LTR ERV1 480 714 0 3338 112 55 22 chr11 41255730 41256273 -107527199 + THE1C-int LTR MaLR 1014 1574 -6 1721 166 46 25 chr11 41256278 41256645 -107526827 + THE1C LTR MaLR 1 375 0 317 22 0 44 chr11 41256645 41256684 -107526788 - MSTB2 LTR MaLR -34 423 387 * 831 153 83 19 chr11 41256683 41256840 -107526632 - THE1C LTR MaLR -208 167 1 23 0 0 0 chr11 41257215 41257238 -107526234 + AT_rich Low_complexity Low_complexity 1 23 0 1826 174 0 0 chr11 41257312 41257599 -107525873 + AluJb SINE Alu 3 289 -23 280 292 22 0 chr11 41258630 41258719 -107524753 + GA-rich Low_complexity Low_complexity 3 93 0 264 212 12 24 chr11 41260250 41260335 -107523137 + (TA)n Simple_repeat Simple_repeat 2 85 0 310 294 24 0 chr11 41261164 41261249 -107522223 + MLT1F1 LTR MaLR 1 87 -480 981 197 26 18 chr11 41261499 41261727 -107521745 + L1MB2 LINE L1 5869 6098 -73 2004 195 114 120 chr11 41261729 41262653 -107520819 - LTR28 LTR ERV1 0 1020 1 446 133 0 0 chr11 41262659 41262734 -107520738 + L1MB2 LINE L1 6095 6169 -2 253 301 96 0 chr11 41262872 41262955 -107520517 - MIR3 SINE MIR -5 203 113 310 279 13 0 chr11 41265111 41265190 -107518282 - L2 LINE L2 0 3313 3234 314 215 81 96 chr11 41265272 41265481 -107517991 + HAL1b LINE L1 553 758 -590 314 239 44 18 chr11 41265653 41265766 -107517706 + HAL1b LINE L1 1042 1157 -191 189 74 0 0 chr11 41265814 41265841 -107517631 + (TATG)n Simple_repeat Simple_repeat 2 28 0 185 313 0 0 chr11 41265949 41265997 -107517475 - L2 LINE L2 -2063 1251 1204 1881 193 38 36 chr11 41266002 41266245 -107517227 - MSTB LTR MaLR -5 421 175 4793 9 0 0 chr11 41266245 41266787 -107516685 - L1PA2 LINE L1 0 6155 5614 1881 193 38 36 chr11 41266787 41266962 -107516510 - MSTB LTR MaLR -251 175 2 240 297 0 0 chr11 41267541 41267605 -107515867 - MIR SINE MIR -102 160 97 509 249 203 5 chr11 41268284 41268501 -107514971 - MIR SINE MIR -1 261 2 272 266 52 71 chr11 41268511 41268665 -107514807 - MIR SINE MIR -44 218 68 22 56 0 0 chr11 41269647 41269683 -107513789 + AT_rich Low_complexity Low_complexity 1 36 0 301 189 22 22 chr11 41270164 41270254 -107513218 + L1MA10 LINE L1 6244 6333 -1 1920 136 0 20 chr11 41270606 41270900 -107512572 + AluSx SINE Alu 1 288 -24 221 339 74 8 chr11 41270959 41271080 -107512392 - MIR SINE MIR -73 189 61 6835 113 8 3 chr11 41271089 41272947 -107510525 + L1PA8 LINE L1 4306 6172 0 2109 116 3 16 chr11 41273425 41273735 -107509737 + AluSq SINE Alu 1 306 -7 205 156 0 0 chr11 41273838 41273870 -107509602 + (CA)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr11 41274101 41274122 -107509350 + AT_rich Low_complexity Low_complexity 1 21 0 326 189 0 0 chr11 41274420 41274473 -107508999 + MER94 DNA DNA 1 53 -81 1345 330 27 34 chr11 41274754 41275317 -107508155 + L1M3c LINE L1 230 788 -5569 814 301 45 21 chr11 41275510 41275892 -107507580 + L1M3c LINE L1 1060 1450 -4907 1051 145 30 0 chr11 41275898 41276064 -107507408 + AluSg/x SINE Alu 135 305 -7 1068 233 33 42 chr11 41276064 41276468 -107507004 + L1MA10 LINE L1 1174 1829 -4528 * 3900 203 38 77 chr11 41276455 41279372 -107504100 + L1MA10 LINE L1 3963 6611 -3 1252 271 60 53 chr11 41280498 41281687 -107501785 + L1MEc LINE L1 1414 2586 -3629 793 150 20 13 chr11 41281680 41281833 -107501639 + L1MC3 LINE L1 6539 6692 -1093 * 1294 164 29 4 chr11 41281880 41282124 -107501348 - L1PA16 LINE L1 -29 6137 5888 4153 234 33 15 chr11 41282252 41285348 -107498124 - L1PA16 LINE L1 -237 7367 3118 308 264 35 0 chr11 41285415 41285502 -107497970 + L1MC4 LINE L1 6614 6703 -1339 297 0 0 0 chr11 41285533 41285566 -107497906 + (TG)n Simple_repeat Simple_repeat 2 34 0 2129 262 27 56 chr11 41285584 41286350 -107497122 - L1PA16 LINE L1 -4510 3071 2330 2017 116 7 14 chr11 41286350 41286643 -107496829 - AluSq SINE Alu -22 291 1 2129 262 27 56 chr11 41286643 41286716 -107496756 - L1PA16 LINE L1 -5251 2330 2256 355 333 10 14 chr11 41287028 41287240 -107496232 - L1PA16 LINE L1 -5276 2298 2083 845 354 57 38 chr11 41287253 41287852 -107495620 - L1PA16 LINE L1 -6177 1397 788 3048 222 65 25 chr11 41287859 41288670 -107494802 + L1MC3 LINE L1 6717 7560 -225 238 296 23 0 chr11 41288724 41288812 -107494660 + L1MC4 LINE L1 6614 6703 -1339 248 232 107 9 chr11 41288824 41288936 -107494536 + L1MC3 LINE L1 7576 7698 -87 337 248 0 73 chr11 41289371 41289386 -107494086 + L1ME3A LINE L1 5998 6013 -157 1992 164 48 26 chr11 41289386 41289801 -107493671 + MSTA LTR MaLR 3 426 -2 337 248 0 73 chr11 41289801 41289922 -107493550 + L1ME3A LINE L1 6013 6124 -46 1443 281 70 51 chr11 41290024 41290736 -107492736 - L1MC4a LINE L1 0 7808 7083 2216 158 14 59 chr11 41290761 41291440 -107492032 + L1MA4A LINE L1 4873 5524 -743 2728 159 66 24 chr11 41291446 41291533 -107491939 + L1MA4A LINE L1 5699 5781 -522 351 0 0 0 chr11 41291533 41291572 -107491900 + (CA)n Simple_repeat Simple_repeat 2 40 0 2728 159 66 24 chr11 41291572 41292063 -107491409 + L1MA4A LINE L1 5781 6301 -2 322 21 43 0 chr11 41293321 41293368 -107490104 + (TAAAA)n Simple_repeat Simple_repeat 4 52 0 242 282 115 0 chr11 41295100 41295178 -107488294 + MIR SINE MIR 67 153 -55 256 261 67 92 chr11 41295200 41295277 -107488195 + MIR3 SINE MIR 67 141 -67 1562 189 39 0 chr11 41295277 41295562 -107487910 + AluJb SINE Alu 1 296 -16 256 261 67 92 chr11 41295562 41295603 -107487869 + MIR3 SINE MIR 141 182 -26 852 147 71 43 chr11 41296619 41296803 -107486669 + MLT1B LTR MaLR 1 189 -201 369 75 0 0 chr11 41296803 41296856 -107486616 + (TC)n Simple_repeat Simple_repeat 2 54 0 841 236 15 10 chr11 41296862 41297065 -107486407 + MLT1B LTR MaLR 187 390 0 330 359 101 30 chr11 41297089 41297515 -107485957 + L2 LINE L2 2853 3308 -5 2341 151 59 2 chr11 41297985 41298390 -107485082 + MSTA LTR MaLR 1 428 0 900 257 5 10 chr11 41299020 41299226 -107484246 - MIR SINE MIR -56 206 2 4653 224 48 14 chr11 41299335 41300551 -107482921 + L1MC3 LINE L1 6509 7765 -20 208 103 0 51 chr11 41300689 41300728 -107482744 + (CAAAAA)n Simple_repeat Simple_repeat 1 37 0 5295 142 12 11 chr11 41301500 41302565 -107480907 + L1PB4 LINE L1 4977 6181 -118 20221 63 8 1 chr11 41302565 41306025 -107477447 - L1PA6 LINE L1 -3 6151 2674 5295 142 12 11 chr11 41306025 41306142 -107477330 + L1PB4 LINE L1 6181 6296 -3 494 288 62 25 chr11 41306635 41306795 -107476677 + MIR3 SINE MIR 38 203 -5 254 358 125 24 chr11 41307367 41307822 -107475650 + L2 LINE L2 2112 2612 -702 2087 113 7 13 chr11 41308716 41309025 -107474447 + AluSc SINE Alu 1 307 -2 1074 132 11 11 chr11 41309025 41309199 -107474273 + AluSg/x SINE Alu 132 305 -5 329 140 11 43 chr11 41309204 41309297 -107474175 + L1MA4A LINE L1 6214 6303 0 1761 207 101 14 chr11 41310415 41310831 -107472641 - L1MC/D LINE L1 -558 5775 5324 815 137 29 7 chr11 41310837 41310976 -107472496 - FRAM SINE Alu -4 172 31 2531 241 37 1 chr11 41310977 41311657 -107471815 - L1MC/D LINE L1 -816 5330 4627 30 59 0 0 chr11 41311847 41311898 -107471574 + AT_rich Low_complexity Low_complexity 1 51 0 199 243 0 0 chr11 41312012 41312049 -107471423 + MIR SINE MIR 79 115 -147 298 263 50 0 chr11 41312112 41312196 -107471276 - MIR SINE MIR -62 146 64 2184 72 6 62 chr11 41312354 41312675 -107470797 - AluY SINE Alu -8 303 1 1547 240 54 14 chr11 41312994 41313440 -107470032 + L1M4 LINE L1 3741 4204 -1942 194 194 16 0 chr11 41313468 41313530 -107469942 + (TA)n Simple_repeat Simple_repeat 2 64 0 312 260 0 42 chr11 41313544 41313640 -107469832 + L1MC4 LINE L1 6611 6702 -1340 523 171 0 0 chr11 41313654 41313736 -107469736 + Tigger3(Golem) DNA MER2_type 1 82 -2947 * 1044 150 0 6 chr11 41313734 41313907 -107469565 + Tigger3(Golem) DNA MER2_type 2721 2892 -137 621 246 97 121 chr11 41313908 41314519 -107468953 + LTR4 LTR ERV1 1 596 0 713 176 23 8 chr11 41314522 41314653 -107468819 + Tigger3(Golem) DNA MER2_type 2894 3026 -3 1568 244 6 8 chr11 41315252 41315616 -107467856 + MLT1A1 LTR MaLR 1 363 -2 23 33 0 0 chr11 41315807 41315837 -107467635 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr11 41315906 41315931 -107467541 + AT_rich Low_complexity Low_complexity 1 25 0 65 43 0 0 chr11 41315996 41316089 -107467383 + AT_rich Low_complexity Low_complexity 1 93 0 1744 186 27 0 chr11 41316112 41316413 -107467059 + AluJb SINE Alu 1 309 -3 25 0 0 0 chr11 41316766 41316791 -107466681 + AT_rich Low_complexity Low_complexity 1 25 0 793 292 64 40 chr11 41317227 41317617 -107465855 - MLT1J2 LTR MaLR -27 423 50 292 222 22 0 chr11 41317814 41317904 -107465568 - L1M4 LINE L1 -1062 5084 4993 1370 97 66 0 chr11 41317918 41318146 -107465326 + L1P LINE L1 5057 5299 -847 * 13154 28 4 0 chr11 41318145 41320081 -107463391 + L1P1 LINE L1 3817 5760 -395 2132 55 0 0 chr11 41320181 41320437 -107463035 - AluY SINE Alu -55 256 1 4521 214 29 22 chr11 41320437 41322439 -107461033 + L1M3f LINE L1 384 2419 -3909 1243 39 13 0 chr11 41322439 41322595 -107460877 + L1PA6 LINE L1 5993 6150 -4 4521 214 29 22 chr11 41322595 41323488 -107459984 + L1M3f LINE L1 2419 3304 -3024 8419 32 8 1 chr11 41323588 41325370 -107458102 + L1PA3 LINE L1 4363 6149 -6 26 50 0 0 chr11 41326986 41327026 -107456446 + AT_rich Low_complexity Low_complexity 1 40 0 195 178 67 0 chr11 41327383 41327428 -107456044 + MIR SINE MIR 117 164 -98 2089 145 0 0 chr11 41327592 41327903 -107455569 + AluSx SINE Alu 1 311 -1 25 0 0 0 chr11 41328007 41328032 -107455440 + AT_rich Low_complexity Low_complexity 1 25 0 536 240 14 7 chr11 41328033 41328179 -107455293 + Charlie1a DNA MER1_type 50 196 -1259 477 148 167 9 chr11 41328179 41328287 -107455185 + L1M3f LINE L1 2 126 -5202 2237 112 0 0 chr11 41329306 41329600 -107453872 - AluSg SINE Alu -12 298 5 276 360 84 40 chr11 41329693 41329943 -107453529 - MIR SINE MIR -1 261 1 86 64 0 0 chr11 41330064 41330220 -107453252 + AT_rich Low_complexity Low_complexity 1 156 0 30 0 0 0 chr11 41330473 41330503 -107452969 + AT_rich Low_complexity Low_complexity 1 30 0 347 214 22 77 chr11 41330974 41331156 -107452316 + L1M4 LINE L1 4996 5167 -979 745 296 37 8 chr11 41331175 41331418 -107452054 + L1MB1 LINE L1 1 250 -6292 324 247 39 0 chr11 41331472 41331549 -107451923 + L1MB1 LINE L1 350 429 -6113 4754 254 93 35 chr11 41331553 41334480 -107448992 + L1MB1 LINE L1 3221 6355 -311 4483 131 20 57 chr11 41334582 41335226 -107448246 - L1PA14 LINE L1 -17 6144 5478 183 42 0 0 chr11 41335226 41335250 -107448222 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2079 97 4 0 chr11 41335250 41335528 -107447944 - AluSg SINE Alu -31 279 1 4483 131 20 57 chr11 41335528 41335712 -107447760 - L1PA14 LINE L1 -681 5480 5345 1439 246 31 18 chr11 41335715 41336171 -107447301 + L1P LINE L1 2902 3363 -2783 23 0 0 0 chr11 41336483 41336506 -107446966 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr11 41336575 41336604 -107446868 + AT_rich Low_complexity Low_complexity 1 29 0 4112 154 45 77 chr11 41337513 41338905 -107444567 + LTR12 LTR ERV1 5 714 0 884 233 58 54 chr11 41338993 41339377 -107444095 + MER67C LTR ERV1 1 403 -260 963 245 141 18 chr11 41339541 41340087 -107443385 - MER114 LTR ERV 0 648 36 379 298 48 66 chr11 41340422 41341075 -107442397 + L1M4 LINE L1 1256 1982 -4843 245 229 79 84 chr11 41341180 41341322 -107442150 + L1M4 LINE L1 1842 2059 -4585 362 253 83 74 chr11 41341387 41341616 -107441856 + L1M4 LINE L1 2440 2670 -3974 342 125 0 0 chr11 41341793 41341841 -107441631 - MLT1A1 LTR MaLR 0 365 318 244 125 62 38 chr11 41341979 41342059 -107441413 + (TA)n Simple_repeat Simple_repeat 2 83 0 21 89 0 0 chr11 41342061 41342117 -107441355 + AT_rich Low_complexity Low_complexity 1 56 0 5213 53 6 21 chr11 41342690 41343034 -107440438 + L1PA7 LINE L1 5482 5813 -341 2374 102 0 0 chr11 41343034 41343339 -107440133 + AluSx SINE Alu 1 305 -7 5213 53 6 21 chr11 41343339 41343675 -107439797 + L1PA7 LINE L1 5813 6152 -2 1805 158 145 18 chr11 41343712 41344019 -107439453 + MSTA LTR MaLR 1 366 -62 1684 64 0 0 chr11 41344019 41344239 -107439233 + L1PA5 LINE L1 5934 6153 -1 1805 158 145 18 chr11 41344239 41344311 -107439161 + MSTA LTR MaLR 366 428 0 468 262 62 65 chr11 41344506 41344815 -107438657 - L1M4 LINE L1 -1746 4400 4093 23 54 0 0 chr11 41344854 41344891 -107438581 + AT_rich Low_complexity Low_complexity 1 37 0 2275 91 3 40 chr11 41344895 41345247 -107438225 - L1PA13 LINE L1 -11 6152 5814 1115 24 0 0 chr11 41345247 41345370 -107438102 - AluYa5/8 SINE Alu -20 291 169 11759 191 26 16 chr11 41345379 41348491 -107434981 - L1PA13 LINE L1 -345 5818 2679 1999 140 35 24 chr11 41349880 41350251 -107433221 + THE1C LTR MaLR 1 375 0 1996 163 126 8 chr11 41350293 41350674 -107432798 + MSTA LTR MaLR 1 426 -2 8276 157 24 39 chr11 41350678 41352279 -107431193 + MSTA-int LTR MaLR 3 1579 -1 1666 176 146 8 chr11 41352280 41352656 -107430816 + MSTA LTR MaLR 1 428 0 1934 109 10 34 chr11 41353149 41353424 -107430048 + AluY SINE Alu 21 290 -21 225 0 0 0 chr11 41353424 41353449 -107430023 + (TTAAA)n Simple_repeat Simple_repeat 2 26 0 1934 109 10 34 chr11 41353449 41353466 -107430006 + AluY SINE Alu 290 306 -5 249 294 16 16 chr11 41353993 41354180 -107429292 - L1M4 LINE L1 -2906 3240 3054 266 268 18 0 chr11 41354612 41354724 -107428748 + L1M1 LINE L1 2652 2765 -4800 * 1231 311 42 40 chr11 41354709 41355263 -107428209 + L1M3e LINE L1 505 1059 -6430 250 282 48 10 chr11 41355382 41355485 -107427987 + L1M3e LINE L1 2305 2411 -5078 951 143 13 0 chr11 41355585 41355739 -107427733 - L1MC/D LINE L1 -2087 5698 5543 280 231 64 0 chr11 41355749 41355827 -107427645 - L1M4 LINE L1 -1924 4222 4140 1960 149 65 9 chr11 41355837 41356010 -107427462 + MER1B DNA MER1_type 1 163 -2549 1703 164 63 36 chr11 41356010 41356375 -107427097 - THE1C LTR MaLR 0 375 1 1960 149 65 9 chr11 41356375 41356522 -107426950 + MER1B DNA MER1_type 163 339 0 1763 267 31 40 chr11 41356549 41357377 -107426095 - L1M4 LINE L1 -2078 4068 3248 245 191 0 0 chr11 41357603 41357645 -107425827 - MER110A LTR ERV1 -4 464 423 424 283 44 28 chr11 41358112 41358292 -107425180 - MLT1E3 LTR MaLR -393 231 49 203 235 0 39 chr11 41358502 41358553 -107424919 + CT-rich Low_complexity Low_complexity 4 52 0 21 0 0 0 chr11 41359600 41359621 -107423851 + AT_rich Low_complexity Low_complexity 1 21 0 24219 46 2 4 chr11 41360509 41363508 -107419964 + L1P LINE L1 1 2994 -3152 1327 114 15 0 chr11 41363608 41363810 -107419662 + L1PA10 LINE L1 5815 6019 -149 817 182 9 51 chr11 41363809 41364023 -107419449 + L1M3e LINE L1 3416 3620 -3945 * 1212 68 0 12 chr11 41364023 41364186 -107419286 + L1PA6 LINE L1 5991 6151 -3 250 56 0 0 chr11 41364152 41364188 -107419284 + L1PA5 LINE L1 6118 6153 -1 1011 107 7 0 chr11 41364196 41364346 -107419126 + L1PA8 LINE L1 6022 6172 0 * 1466 211 52 57 chr11 41364317 41364642 -107418830 + L1M3e LINE L1 4573 4895 -2670 2139 125 3 7 chr11 41364642 41364937 -107418535 + AluSx SINE Alu 1 294 -18 1466 211 52 57 chr11 41364937 41365169 -107418303 + L1M3e LINE L1 4895 5127 -2438 1404 226 83 16 chr11 41365169 41365673 -107417799 + Charlie1 DNA MER1_type 2223 2760 -1 591 266 70 33 chr11 41366359 41366630 -107416842 - L1ME2 LINE L1 -7 6157 5877 1174 293 36 4 chr11 41366636 41367086 -107416386 - L1ME2 LINE L1 -319 5845 5382 27 49 0 0 chr11 41367124 41367165 -107416307 + AT_rich Low_complexity Low_complexity 1 41 0 22 35 0 0 chr11 41367225 41367254 -107416218 + AT_rich Low_complexity Low_complexity 1 29 0 273 281 209 22 chr11 41367254 41367532 -107415940 - L1ME2 LINE L1 -950 5196 4867 756 219 13 0 chr11 41367541 41367692 -107415780 + LTR69 LTR ERVL 1 153 -435 1988 133 7 7 chr11 41368388 41368689 -107414783 - AluSx SINE Alu -11 301 1 2236 113 0 3 chr11 41369198 41369571 -107413901 + AluSg SINE Alu 1 372 0 1961 193 6 53 chr11 41369960 41370427 -107413045 + MER65A LTR ERV1 1 445 0 294 316 51 6 chr11 41371138 41371304 -107412168 + L1ME LINE L1 5537 5704 -460 21 36 0 0 chr11 41371326 41371354 -107412118 + AT_rich Low_complexity Low_complexity 1 28 0 463 321 24 6 chr11 41374604 41374772 -107408700 - MIR SINE MIR -4 258 88 963 132 0 0 chr11 41375414 41375550 -107407922 - AluSq/x SINE Alu -175 138 3 1477 202 40 104 chr11 41375704 41376259 -107407213 + MLT2B1 LTR ERVL 1 519 -1 519 279 32 0 chr11 41376506 41376660 -107406812 - L1ME1 LINE L1 -5 6161 6003 494 250 104 42 chr11 41376667 41376859 -107406613 - MER46C DNA MER2_type -134 204 1 243 339 0 0 chr11 41377031 41377087 -107406385 + L2 LINE L2 3196 3251 -21 249 268 0 0 chr11 41377188 41377201 -107406271 + MER3 DNA MER1_type 35 47 -162 664 235 34 0 chr11 41377201 41377350 -107406122 - MER3 DNA MER1_type 0 209 56 307 319 65 22 chr11 41377509 41377647 -107405825 - MIR3 SINE MIR -62 146 3 1450 190 90 80 chr11 41378048 41378548 -107404924 - MLT1D LTR MaLR 0 505 1 1939 150 13 0 chr11 41378720 41379020 -107404452 + AluSp SINE Alu 1 304 -9 288 267 27 27 chr11 41379097 41379172 -107404300 - L2 LINE L2 -1 3312 3238 3183 137 22 2 chr11 41379202 41379697 -107403775 - LTR10B LTR ERV1 0 505 1 6836 274 32 26 chr11 41379697 41381763 -107401709 - LTR10B-int LTR ERV1 0 6649 4571 3743 216 38 27 chr11 41381871 41382751 -107400721 - HERVI LTR ERV1 -4890 1759 871 1778 262 40 35 chr11 41382780 41383384 -107400088 - HERVI LTR ERV1 -6662 1123 517 948 228 98 8 chr11 41383488 41383742 -107399730 - HERVI LTR ERV1 -6367 282 6 3163 124 24 16 chr11 41383744 41384245 -107399227 - LTR10B LTR ERV1 0 505 1 1791 225 49 14 chr11 41384336 41384829 -107398643 + L1MB7 LINE L1 5655 6164 -20 1172 170 30 0 chr11 41385090 41385320 -107398152 - L1P LINE L1 -4127 2019 1783 488 234 77 23 chr11 41385765 41385979 -107397493 - L1MEc LINE L1 -4982 1088 860 1723 182 47 11 chr11 41386003 41386365 -107397107 - THE1C LTR MaLR 0 375 1 2196 137 6 11 chr11 41386365 41386722 -107396750 - THE1C-int LTR MaLR 0 1580 1226 364 250 50 10 chr11 41386722 41386822 -107396650 + MLT1I LTR MaLR 306 409 0 1064 43 0 14 chr11 41387848 41387988 -107395484 + L1PA5 LINE L1 6017 6154 0 23 0 0 0 chr11 41389511 41389534 -107393938 + AT_rich Low_complexity Low_complexity 1 23 0 192 385 13 0 chr11 41389657 41389735 -107393737 - MIR SINE MIR -66 142 64 217 380 25 8 chr11 41390109 41390230 -107393242 - MIR3 SINE MIR -10 198 76 191 161 18 0 chr11 41390389 41390445 -107393027 + (TA)n Simple_repeat Simple_repeat 1 57 0 192 312 0 0 chr11 41391080 41391173 -107392299 + (TA)n Simple_repeat Simple_repeat 2 94 0 233 210 16 0 chr11 41391319 41391381 -107392091 + (TATATG)n Simple_repeat Simple_repeat 3 65 0 234 207 103 0 chr11 41391394 41391452 -107392020 + L1MC3 LINE L1 6583 6646 -1139 1510 205 27 56 chr11 41391516 41391892 -107391580 - MLT2D LTR ERVL -48 366 2 395 289 122 30 chr11 41391894 41392157 -107391315 + L1M4 LINE L1 4061 4347 -1799 1352 101 96 0 chr11 41392582 41392791 -107390681 - MER30 DNA MER1_type -1 229 1 31 58 0 0 chr11 41392848 41392900 -107390572 + AT_rich Low_complexity Low_complexity 1 52 0 2488 128 5 8 chr11 41394985 41395361 -107388111 - THE1C LTR MaLR 0 375 1 351 0 0 0 chr11 41395430 41395469 -107388003 + (TG)n Simple_repeat Simple_repeat 2 40 0 616 271 141 7 chr11 41395835 41396134 -107387338 + MER58B DNA MER1_type 2 340 -1 1327 276 59 51 chr11 41396951 41397696 -107385776 + MER97c DNA MER1_type? 6 756 -334 3865 268 52 29 chr11 41397731 41399122 -107384350 + L1M4 LINE L1 17 1440 -5102 2698 124 143 126 chr11 41399124 41400302 -107383170 - LTR12 LTR ERV1 0 1523 9 1462 292 8 10 chr11 41400348 41400834 -107382638 + L1M4 LINE L1 1432 1916 -4730 458 315 83 90 chr11 41400834 41401542 -107381930 + L1MDa LINE L1 19 721 -5819 3193 219 43 47 chr11 41402023 41402760 -107380712 - L1MC3 LINE L1 -743 5403 5529 2260 80 17 7 chr11 41402760 41403059 -107380413 + AluY SINE Alu 4 305 -6 3193 219 43 47 chr11 41403059 41404212 -107379260 - L1MC3 LINE L1 -616 5530 4374 869 226 163 26 chr11 41404227 41404608 -107378864 - L1MC3 LINE L1 -1910 4236 3804 221 320 175 26 chr11 41404625 41404819 -107378653 - L3 LINE CR1 -733 844 622 258 304 103 92 chr11 41404986 41405259 -107378213 - L3 LINE CR1 -1039 538 263 1923 232 37 5 chr11 41406007 41406438 -107377034 - MER68 LTR ERV1 -1 561 117 351 253 55 71 chr11 41406592 41406774 -107376698 + MIR SINE MIR 23 201 -61 369 0 0 0 chr11 41407897 41407938 -107375534 + (TG)n Simple_repeat Simple_repeat 2 42 0 361 235 12 0 chr11 41408002 41408083 -107375389 + MLT1F LTR MaLR 1 82 -460 500 280 151 5 chr11 41408206 41408392 -107375080 + MLT1F LTR MaLR 240 452 -90 264 77 0 0 chr11 41408407 41408446 -107375026 + (A)n Simple_repeat Simple_repeat 1 39 0 21 71 0 0 chr11 41408804 41408846 -107374626 + AT_rich Low_complexity Low_complexity 1 42 0 298 338 99 40 chr11 41409054 41409255 -107374217 + L2 LINE L2 2728 2940 -374 241 367 25 35 chr11 41409413 41409612 -107373860 + L2 LINE L2 3117 3313 0 1565 166 176 166 chr11 41409702 41410711 -107372761 + LTR28 LTR ERV1 1 1020 0 2307 67 3 3 chr11 41411584 41411884 -107371588 - AluY SINE Alu -11 300 1 187 402 0 0 chr11 41412284 41412371 -107371101 - MIR SINE MIR -88 120 34 24 0 0 0 chr11 41412925 41412949 -107370523 + AT_rich Low_complexity Low_complexity 1 24 0 338 389 50 13 chr11 41413055 41413294 -107370178 + MIR SINE MIR 2 249 -13 1466 224 49 58 chr11 41413605 41414107 -107369365 + MLT1F1 LTR MaLR 1 542 0 214 205 0 51 chr11 41414424 41414502 -107368970 + T-rich Low_complexity Low_complexity 2 75 0 198 143 0 0 chr11 41415040 41415075 -107368397 + (TG)n Simple_repeat Simple_repeat 2 36 0 417 136 171 0 chr11 41417092 41417180 -107366292 - AluSx SINE Alu -14 295 193 1013 121 0 0 chr11 41417186 41417327 -107366145 - AluSx SINE Alu -171 141 1 35 41 0 0 chr11 41417935 41417984 -107365488 + AT_rich Low_complexity Low_complexity 1 49 0 5600 196 50 15 chr11 41418001 41418855 -107364617 - L1MC1 LINE L1 -5 6328 5402 718 215 168 47 chr11 41418855 41419236 -107364236 - MSTC LTR MaLR -1 427 1 5600 196 50 15 chr11 41419236 41419859 -107363613 - L1MC1 LINE L1 -931 5402 4802 278 353 114 6 chr11 41419880 41420047 -107363425 - MIR SINE MIR -56 206 22 1980 103 0 0 chr11 41420324 41420585 -107362887 + AluSg SINE Alu 40 300 -10 347 306 56 65 chr11 41421858 41422090 -107361382 + HAL1b LINE L1 684 913 -435 7542 204 87 25 chr11 41422755 41424405 -107359067 - MER52A LTR ERV1 -3 1752 1 797 194 78 119 chr11 41424456 41424759 -107358713 - MLT1A1 LTR MaLR -1 364 76 1845 89 55 30 chr11 41424759 41425064 -107358408 + AluSc SINE Alu 1 312 0 797 194 78 119 chr11 41425064 41425120 -107358352 - MLT1A1 LTR MaLR -289 76 19 26 0 0 0 chr11 41426120 41426146 -107357326 + AT_rich Low_complexity Low_complexity 1 26 0 338 74 19 0 chr11 41426335 41426389 -107357083 + (GA)n Simple_repeat Simple_repeat 2 56 0 1684 239 88 7 chr11 41426401 41426823 -107356649 - MLT2B1 LTR ERVL -64 456 1 427 309 31 26 chr11 41426950 41427144 -107356328 + L1ME LINE L1 490 684 -5846 571 289 72 59 chr11 41427234 41427773 -107355699 + L1ME LINE L1 1268 1813 -4727 258 292 0 0 chr11 41428447 41428519 -107354953 + MLT1-int LTR MaLR 401 472 -899 396 283 9 0 chr11 41429010 41429116 -107354356 - L1MC4 LINE L1 -1219 6823 6717 267 54 0 0 chr11 41429565 41429602 -107353870 + (CA)n Simple_repeat Simple_repeat 1 37 0 715 84 39 13 chr11 41430392 41430546 -107352926 + (TAGA)n Simple_repeat Simple_repeat 2 159 0 669 161 124 7 chr11 41430556 41430693 -107352779 - LTR40a LTR ERVL -366 153 1 22 70 0 0 chr11 41430879 41430922 -107352550 + AT_rich Low_complexity Low_complexity 1 43 0 10485 183 38 14 chr11 41430952 41433499 -107349973 - L1MA6 LINE L1 -6 6294 3809 225 0 0 0 chr11 41433499 41433524 -107349948 + (TTG)n Simple_repeat Simple_repeat 3 27 0 10485 183 38 14 chr11 41433524 41433921 -107349551 - L1MA6 LINE L1 -2491 3809 3423 1979 126 3 20 chr11 41433921 41434215 -107349257 - AluSp SINE Alu -24 289 1 10485 183 38 14 chr11 41434215 41434464 -107349008 - L1MA6 LINE L1 -2877 3423 3181 1787 236 31 9 chr11 41434464 41434887 -107348585 + MSTB1 LTR MaLR 1 432 0 10485 183 38 14 chr11 41434887 41434977 -107348495 - L1MA6 LINE L1 -3119 3181 2924 3994 183 27 10 chr11 41434973 41435956 -107347516 - L1MA4 LINE L1 -251 7468 6473 * 1147 231 51 35 chr11 41435958 41436412 -107347060 - L1MA4 LINE L1 -3957 3608 3148 1838 266 21 22 chr11 41436416 41437092 -107346380 - L1MA4 LINE L1 -4637 2928 2254 781 307 130 22 chr11 41437491 41438090 -107345382 - L1ME2 LINE L1 -25 6139 5476 413 238 28 49 chr11 41438099 41438242 -107345230 - L1PB4 LINE L1 -6 6150 6011 675 234 88 87 chr11 41438249 41438774 -107344698 - L1ME2 LINE L1 -677 5487 4971 209 231 33 22 chr11 41438782 41438873 -107344599 + (TA)n Simple_repeat Simple_repeat 2 93 0 243 333 48 12 chr11 41438873 41439038 -107344434 - L1ME2 LINE L1 -1207 4939 4769 28 61 0 0 chr11 41439318 41439367 -107344105 + AT_rich Low_complexity Low_complexity 1 49 0 1356 247 46 56 chr11 41439715 41440217 -107343255 + MLT1D LTR MaLR 9 505 0 2130 101 14 0 chr11 41440517 41440804 -107342668 + AluSg SINE Alu 1 291 -19 264 77 0 0 chr11 41442432 41442471 -107341001 + (TG)n Simple_repeat Simple_repeat 2 40 0 341 286 79 14 chr11 41442680 41442820 -107340652 + MIR SINE MIR 113 261 -1 2233 94 0 0 chr11 41443935 41444221 -107339251 + AluSg SINE Alu 9 294 -16 20651 158 22 13 chr11 41444474 41452012 -107331460 + L1MA3 LINE L1 17 7724 0 384 281 81 36 chr11 41452263 41452460 -107331012 - L2 LINE L2 0 3313 3104 276 30 0 0 chr11 41452460 41452493 -107330979 + (TG)n Simple_repeat Simple_repeat 1 33 0 384 281 81 36 chr11 41452493 41452516 -107330956 - L2 LINE L2 -209 3104 3083 1260 328 57 11 chr11 41452566 41453127 -107330345 - L2 LINE L2 -781 2533 1947 2314 164 93 73 chr11 41453611 41454213 -107329259 + LTR18B LTR ERVL 1 614 0 234 327 19 37 chr11 41454482 41454589 -107328883 + L2 LINE L2 3164 3268 -4 23 0 0 0 chr11 41455204 41455227 -107328245 + AT_rich Low_complexity Low_complexity 1 23 0 250 205 12 36 chr11 41455336 41455419 -107328053 + A-rich Low_complexity Low_complexity 3 83 0 285 316 53 53 chr11 41456473 41456587 -107326885 + MIR SINE MIR 58 174 -88 2207 119 36 30 chr11 41456587 41456949 -107326523 + THE1B LTR MaLR 1 364 0 285 316 53 53 chr11 41456949 41457021 -107326451 + MIR SINE MIR 173 244 -18 313 222 139 19 chr11 41457417 41457525 -107325947 + MIR SINE MIR 127 247 -15 222 267 198 0 chr11 41458745 41458831 -107324641 - MER5A DNA MER1_type -77 112 10 851 181 39 34 chr11 41458852 41459056 -107324416 + MER3 DNA MER1_type 5 209 0 689 220 83 0 chr11 41459264 41459432 -107324040 + MIR SINE MIR 49 230 -32 553 211 88 4 chr11 41459522 41459760 -107323712 - L1ME2 LINE L1 -14 6150 5847 759 206 92 32 chr11 41459766 41459984 -107323488 - L1ME2 LINE L1 -362 5802 5572 1592 236 62 24 chr11 41459991 41460491 -107322981 + LTR40a LTR ERVL 1 519 0 596 289 17 60 chr11 41460652 41460884 -107322588 + HERVL40 LTR ERVL 198 419 -5111 1109 139 29 2 chr11 41461363 41461655 -107321817 + THE1C LTR MaLR 1 375 0 3366 323 30 33 chr11 41461700 41462998 -107320474 + HERVL40 LTR ERVL 1593 2886 -2644 1212 247 7 27 chr11 41462998 41463298 -107320174 + HERVL40 LTR ERVL 3009 3302 -2228 466 312 67 18 chr11 41463364 41463646 -107319826 - L1ME2 LINE L1 -1012 5134 4839 26 0 0 0 chr11 41463655 41463681 -107319791 + AT_rich Low_complexity Low_complexity 1 26 0 522 156 10 0 chr11 41463797 41463893 -107319579 + L1PBa LINE L1 2788 2884 -3979 * 1960 170 6 99 chr11 41463889 41464383 -107319089 + L1 LINE L1 3016 3463 -3399 29 101 0 0 chr11 41464599 41464698 -107318774 + AT_rich Low_complexity Low_complexity 1 99 0 1796 172 38 0 chr11 41465139 41465511 -107317961 - L1MA4 LINE L1 -4 6296 5911 232 294 25 34 chr11 41466124 41466243 -107317229 + GA-rich Low_complexity Low_complexity 4 121 0 2418 38 6 19 chr11 41466511 41466824 -107316648 + AluY SINE Alu 1 309 -2 3626 109 19 2 chr11 41467519 41468049 -107315423 + L1PA10 LINE L1 5624 6162 -6 392 305 87 92 chr11 41468089 41468689 -107314783 - HAL1 LINE L1 -47 2460 1864 438 284 121 16 chr11 41468696 41468886 -107314586 + HAL1 LINE L1 981 1190 -1317 228 358 0 37 chr11 41469213 41469322 -107314150 - L2 LINE L2 -213 3059 2955 22 0 0 0 chr11 41470861 41470883 -107312589 + AT_rich Low_complexity Low_complexity 1 22 0 3043 54 0 3 chr11 41470961 41471349 -107312123 - L1PA4 LINE L1 0 6155 5769 871 0 0 0 chr11 41471349 41471446 -107312026 + L1PA4 LINE L1 5696 5792 -363 209 306 61 10 chr11 41471458 41471556 -107311916 - MIR SINE MIR -56 206 104 465 298 135 14 chr11 41471568 41471783 -107311689 + MIR SINE MIR 13 253 -9 192 341 12 35 chr11 41471792 41471877 -107311595 - MIR SINE MIR -160 102 20 1636 99 12 56 chr11 41472673 41472925 -107310547 - AluSg SINE Alu -16 294 54 245 342 61 56 chr11 41473144 41473340 -107310132 - L2 LINE L2 -969 2345 2149 769 266 104 29 chr11 41473720 41474210 -107309262 - MLT2E LTR ERVL -4 624 10 351 0 0 0 chr11 41474297 41474336 -107309136 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1614 174 4 4 chr11 41474462 41474726 -107308746 - AluJb SINE Alu -38 274 11 730 147 0 20 chr11 41476001 41476151 -107307321 + (GAAA)n Simple_repeat Simple_repeat 2 148 0 3482 22 0 2 chr11 41476566 41476980 -107306492 - L1PA2 LINE L1 -1 6154 5742 3393 17 0 0 chr11 41476980 41477392 -107306080 + L1P LINE L1 2760 3171 -2975 23 0 0 0 chr11 41478221 41478244 -107305228 + AT_rich Low_complexity Low_complexity 1 23 0 34 0 0 0 chr11 41478340 41478374 -107305098 + AT_rich Low_complexity Low_complexity 1 34 0 6376 82 7 21 chr11 41478468 41480090 -107303382 + L1PA7 LINE L1 4530 6150 -4 1230 146 0 0 chr11 41480752 41480937 -107302535 + AluY SINE Alu 105 289 -22 21 36 0 0 chr11 41481036 41481064 -107302408 + AT_rich Low_complexity Low_complexity 1 28 0 373 250 79 72 chr11 41482372 41482524 -107300948 - MIR3 SINE MIR -38 170 18 23 0 0 29 chr11 41483405 41483422 -107300050 + AT_rich Low_complexity Low_complexity 1 17 -16 1937 113 3 27 chr11 41483422 41483715 -107299757 - AluSg SINE Alu -24 286 1 23 0 0 29 chr11 41483715 41483731 -107299741 + AT_rich Low_complexity Low_complexity 17 33 0 24 53 0 0 chr11 41484078 41484116 -107299356 + AT_rich Low_complexity Low_complexity 1 38 0 219 178 27 27 chr11 41484262 41484335 -107299137 + (TA)n Simple_repeat Simple_repeat 2 74 0 205 300 0 14 chr11 41484705 41484775 -107298697 + GA-rich Low_complexity Low_complexity 2 70 0 1450 212 37 3 chr11 41485228 41485577 -107297895 - L1MA8 LINE L1 -7 6284 5924 2341 151 5 51 chr11 41485577 41485628 -107297844 - MSTA LTR MaLR 0 428 376 2194 106 7 0 chr11 41485628 41485921 -107297551 - AluSp SINE Alu -16 297 3 2341 151 5 51 chr11 41485921 41486318 -107297154 - MSTA LTR MaLR -52 376 1 1211 122 37 11 chr11 41486319 41486508 -107296964 - MSTA LTR MaLR -234 194 1 8141 207 18 11 chr11 41486508 41488071 -107295401 - MSTA-int LTR MaLR 0 1651 79 2388 164 25 2 chr11 41488071 41488467 -107295005 - MSTA LTR MaLR -23 405 1 1401 204 7 7 chr11 41488467 41488751 -107294721 - L1MA8 LINE L1 -363 5928 5645 268 336 10 0 chr11 41488751 41488855 -107294617 - Tigger5 DNA MER2_type 0 2323 2219 3446 214 26 6 chr11 41488904 41490007 -107293465 - L1MA8 LINE L1 -665 5647 4518 1750 188 57 31 chr11 41490010 41490548 -107292924 + MLT2A2 LTR ERVL 1 554 0 1300 179 84 3 chr11 41490552 41490849 -107292623 - L1MA8 LINE L1 -1629 4517 4197 1109 268 151 22 chr11 41490851 41491847 -107291625 + L1M4c LINE L1 1522 2664 -3718 288 146 17 67 chr11 41491851 41492029 -107291443 + (TA)n Simple_repeat Simple_repeat 2 170 0 5918 231 44 32 chr11 41492029 41493791 -107289681 + L1M4c LINE L1 2683 4465 -1917 24 53 0 0 chr11 41493839 41493877 -107289595 + AT_rich Low_complexity Low_complexity 1 38 0 1374 206 18 18 chr11 41494871 41495189 -107288283 + AluJo SINE Alu 1 318 0 22 35 0 0 chr11 41496909 41496938 -107286534 + AT_rich Low_complexity Low_complexity 1 29 0 1435 200 51 51 chr11 41497340 41497730 -107285742 + MLT1B LTR MaLR 1 390 0 1584 227 69 87 chr11 41498387 41498951 -107284521 + MLT2B3 LTR ERVL 1 554 0 245 362 107 12 chr11 41499008 41499251 -107284221 + L2 LINE L2 389 654 -2660 2573 178 8 6 chr11 41499343 41499833 -107283639 - L1MB3 LINE L1 -4 6179 5689 185 138 0 0 chr11 41500194 41500223 -107283249 + L2 LINE L2 3285 3313 0 23 0 0 0 chr11 41501209 41501232 -107282240 + AT_rich Low_complexity Low_complexity 1 23 0 2006 134 3 3 chr11 41501303 41501630 -107281842 - AluSq SINE Alu 0 327 1 228 282 51 0 chr11 41501635 41501713 -107281759 - L2 LINE L2 -12 3301 3220 892 256 9 5 chr11 41501828 41502047 -107281425 - MER58A DNA MER1_type 0 224 5 192 396 65 0 chr11 41502204 41502358 -107281114 + MIR SINE MIR 52 215 -47 834 309 26 8 chr11 41502372 41502637 -107280835 - HERV16 LTR ERVL -2538 3116 2847 1087 306 83 30 chr11 41502794 41503334 -107280138 - HERV16 LTR ERVL -4157 839 271 538 329 118 24 chr11 41503577 41503957 -107279515 - LTR16A LTR ERVL -7 443 28 25 65 0 0 chr11 41505353 41505399 -107278073 + AT_rich Low_complexity Low_complexity 1 46 0 21 36 0 0 chr11 41505493 41505521 -107277951 + AT_rich Low_complexity Low_complexity 1 28 0 519 308 75 9 chr11 41505534 41505748 -107277724 - MIR SINE MIR -10 252 25 25 31 0 0 chr11 41505748 41505780 -107277692 + AT_rich Low_complexity Low_complexity 1 32 0 426 207 52 43 chr11 41506390 41506506 -107276966 + Charlie5 DNA MER1_type 1 117 -2495 22 35 0 0 chr11 41506506 41506535 -107276937 + AT_rich Low_complexity Low_complexity 1 29 0 1176 241 114 33 chr11 41506665 41507155 -107276317 + L1ME1 LINE L1 5618 6147 -19 851 276 91 13 chr11 41507176 41507705 -107275767 + L1MB1 LINE L1 2590 3159 -2987 7359 211 39 27 chr11 41507709 41509849 -107273623 + L1MB1 LINE L1 3318 5496 -672 2103 95 0 16 chr11 41509849 41510165 -107273307 + AluY SINE Alu 1 311 0 7359 211 39 27 chr11 41510165 41510810 -107272662 + L1MB1 LINE L1 5496 6131 -37 825 164 34 0 chr11 41510825 41510971 -107272501 + Tigger5 DNA MER2_type 2153 2303 -20 252 151 57 0 chr11 41510990 41511043 -107272429 + L1MA10 LINE L1 6271 6326 -8 4039 162 16 55 chr11 41511196 41512053 -107271419 - L1PB4 LINE L1 0 6156 5333 738 113 81 16 chr11 41512041 41512165 -107271307 - L1PA16 LINE L1 -310 5856 5725 * 5069 220 34 7 chr11 41512245 41513121 -107270351 - L1PB4 LINE L1 -842 5304 4382 369 93 0 0 chr11 41513121 41513175 -107270297 + (TG)n Simple_repeat Simple_repeat 2 55 0 5069 220 34 7 chr11 41513175 41513556 -107269916 - L1PB4 LINE L1 -1764 4382 4013 240 308 101 14 chr11 41513765 41514041 -107269431 + L1ME2 LINE L1 4826 5125 -1021 2113 242 96 26 chr11 41514122 41514969 -107268503 + L1ME2 LINE L1 5277 6164 0 232 333 82 0 chr11 41514976 41515111 -107268361 - L2 LINE L2 -956 2358 2213 528 30 0 0 chr11 41515532 41515598 -107267874 + (TA)n Simple_repeat Simple_repeat 1 66 0 475 214 26 0 chr11 41516612 41516729 -107266743 + L1MC1 LINE L1 6208 6327 -6 29 28 0 0 chr11 41516919 41516955 -107266517 + AT_rich Low_complexity Low_complexity 1 36 0 222 237 246 35 chr11 41517729 41517843 -107265629 + MIR3 SINE MIR 4 141 -67 21 71 0 0 chr11 41518700 41518742 -107264730 + AT_rich Low_complexity Low_complexity 1 42 0 279 254 36 18 chr11 41519267 41519377 -107264095 + (TAGA)n Simple_repeat Simple_repeat 2 113 0 216 0 0 0 chr11 41519493 41519517 -107263955 + (T)n Simple_repeat Simple_repeat 1 24 0 37 23 0 0 chr11 41520682 41520726 -107262746 + AT_rich Low_complexity Low_complexity 1 44 0 6833 262 122 59 chr11 41521921 41523634 -107259838 - LTR52-int LTR ERVL -205 3351 1748 1226 222 57 72 chr11 41523634 41524147 -107259325 - MLT1D LTR MaLR 0 505 1 6833 262 122 59 chr11 41524147 41525582 -107257890 - LTR52-int LTR ERVL -1808 1748 3 454 189 9 54 chr11 41525622 41525670 -107257802 - LTR52 LTR ERVL -41 380 331 1167 262 2 60 chr11 41525670 41526067 -107257405 - MLT1A2 LTR MaLR 0 374 1 454 189 9 54 chr11 41526067 41526129 -107257343 - LTR52 LTR ERVL -90 331 275 297 245 27 136 chr11 41526198 41526345 -107257127 + MLT1H LTR MaLR 382 512 -37 32 0 0 0 chr11 41526850 41526882 -107256590 + AT_rich Low_complexity Low_complexity 1 32 0 2393 67 3 0 chr11 41527777 41528077 -107255395 - AluY SINE Alu -10 301 1 359 372 44 31 chr11 41528878 41529171 -107254301 + L2 LINE L2 1801 2097 -1217 925 172 11 111 chr11 41531111 41531390 -107252082 - L1MB8 LINE L1 0 6178 5928 1567 228 0 3 chr11 41531409 41531743 -107251729 - L1MA6 LINE L1 -238 6062 5730 218 360 13 0 chr11 41531795 41531870 -107251602 + MIR3 SINE MIR 84 159 -49 2391 70 0 0 chr11 41532019 41532319 -107251153 + AluY SINE Alu 1 300 -11 204 292 97 0 chr11 41533076 41533148 -107250324 - MIR SINE MIR -27 235 157 365 119 30 99 chr11 41534323 41534393 -107249079 - L1PA11 LINE L1 -3 6171 6109 2372 144 6 0 chr11 41534393 41534755 -107248717 + THE1B LTR MaLR 1 364 0 365 119 30 99 chr11 41534755 41534785 -107248687 - L1PA11 LINE L1 -65 6109 6078 2565 87 2 174 chr11 41534785 41535325 -107248147 + THE1B-int LTR MaLR 32 478 -1102 207 139 0 0 chr11 41535593 41535629 -107247843 + (TG)n Simple_repeat Simple_repeat 1 36 0 504 243 40 34 chr11 41535794 41535942 -107247530 - MIR SINE MIR -112 150 2 26 0 0 0 chr11 41536298 41536324 -107247148 + AT_rich Low_complexity Low_complexity 1 26 0 2987 126 2 9 chr11 41536678 41537122 -107246350 + MLT2A2 LTR ERVL 1 441 -12 315 345 73 19 chr11 41537485 41537691 -107245781 - MIR SINE MIR -26 236 20 318 265 61 75 chr11 41538119 41538266 -107245206 - MIR SINE MIR -69 193 49 1656 169 29 0 chr11 41538626 41538904 -107244568 - AluJb SINE Alu -26 286 1 481 67 13 13 chr11 41539375 41539450 -107244022 + (TTCC)n Simple_repeat Simple_repeat 4 78 0 4717 208 66 35 chr11 41539507 41540532 -107242940 - L1MA10 LINE L1 0 6334 5342 189 74 0 0 chr11 41540532 41540559 -107242913 + (TTA)n Simple_repeat Simple_repeat 1 27 0 4717 208 66 35 chr11 41540559 41541903 -107241569 - L1MA10 LINE L1 -992 5342 3894 661 310 73 58 chr11 41542045 41542132 -107241340 - LTR16C LTR ERVL 0 491 407 2108 195 42 2 chr11 41542132 41542542 -107240930 - MSTB LTR MaLR 0 426 1 661 310 73 58 chr11 41542542 41542783 -107240689 - LTR16C LTR ERVL -84 407 158 258 271 6 83 chr11 41543030 41543211 -107240261 + L1MDa LINE L1 235 401 -6139 1470 196 54 8 chr11 41543660 41544033 -107239439 + L1MDa LINE L1 1623 2012 -4528 260 343 9 0 chr11 41544203 41544305 -107239167 + MLT1I LTR MaLR 1 103 -306 382 284 63 0 chr11 41544305 41544432 -107239040 - MLT1H LTR MaLR 0 549 415 242 330 165 23 chr11 41544600 41544818 -107238654 + MLT1I LTR MaLR 158 406 -3 439 360 43 27 chr11 41545001 41545301 -107238171 + HERV16 LTR ERVL 1665 1969 -3027 270 287 73 79 chr11 41545304 41545468 -107238004 + L2 LINE L2 2587 2749 -565 826 295 70 56 chr11 41545471 41545702 -107237770 - L1MDa LINE L1 -4470 1610 1384 2113 100 0 28 chr11 41545702 41546022 -107237450 - AluY SINE Alu 0 311 1 2357 99 3 0 chr11 41546025 41546337 -107237135 - AluSp SINE Alu 0 313 1 826 295 70 56 chr11 41546337 41546916 -107236556 - L1MDa LINE L1 -4697 1383 810 407 159 35 0 chr11 41546916 41547029 -107236443 + (TA)n Simple_repeat Simple_repeat 2 118 0 1314 303 70 39 chr11 41547030 41547806 -107235666 - L1MDa LINE L1 -5269 801 2 273 396 71 5 chr11 41547817 41548014 -107235458 + L2 LINE L2 2762 2971 -343 2400 188 40 30 chr11 41548027 41548570 -107234902 + LTR60 LTR ERV1 1 549 -37 351 200 82 67 chr11 41548462 41548597 -107234875 + TAR1 Satellite telomeric 49 185 -1926 * 992 234 77 29 chr11 41548882 41549194 -107234278 + LTR60-int LTR ERV1 1081 1407 -3391 581 256 71 42 chr11 41549735 41550027 -107233445 + LTR60-int LTR ERV1 1543 1828 -5263 2501 247 42 18 chr11 41550044 41551211 -107232261 + LTR60-int LTR ERV1 2595 4038 -842 365 340 33 38 chr11 41552116 41552484 -107230988 + LTR60-int LTR ERV1 6085 6450 -226 2643 196 7 37 chr11 41552728 41553301 -107230171 + LTR60 LTR ERV1 1 556 -30 2167 82 6 25 chr11 41553564 41553879 -107229593 - AluY SINE Alu -1 310 2 310 188 43 0 chr11 41554102 41554171 -107229301 - L1MB8 LINE L1 -6 6172 6101 1573 219 99 67 chr11 41554401 41554936 -107228536 + MLT2B3 LTR ERVL 3 554 0 28 48 0 0 chr11 41555136 41555178 -107228294 + AT_rich Low_complexity Low_complexity 1 42 0 24 67 0 0 chr11 41556179 41556224 -107227248 + AT_rich Low_complexity Low_complexity 1 45 0 206 121 0 0 chr11 41557097 41557130 -107226342 + (T)n Simple_repeat Simple_repeat 1 33 0 180 306 48 0 chr11 41557426 41557488 -107225984 - MIR SINE MIR -77 185 121 1813 138 3 7 chr11 41557509 41557798 -107225674 + AluSx SINE Alu 1 288 -24 23 68 0 0 chr11 41557865 41557909 -107225563 + AT_rich Low_complexity Low_complexity 1 44 0 339 268 202 25 chr11 41557923 41558121 -107225351 - MIR SINE MIR -21 241 9 2272 115 0 0 chr11 41558680 41558992 -107224480 + AluSx SINE Alu 1 312 0 235 209 0 0 chr11 41559336 41559379 -107224093 - L1 LINE L1 -1390 4756 4714 952 223 14 0 chr11 41559476 41559691 -107223781 - L1 LINE L1 -1390 4756 4539 214 374 89 0 chr11 41559748 41559871 -107223601 + L2 LINE L2 3179 3312 -1 26 50 0 0 chr11 41560178 41560218 -107223254 + AT_rich Low_complexity Low_complexity 1 40 0 1860 165 50 70 chr11 41560506 41560705 -107222767 + MLT2A2 LTR ERVL 1 202 -352 1900 160 0 3 chr11 41560705 41561005 -107222467 + AluSx SINE Alu 6 304 -8 1860 165 50 70 chr11 41561005 41561359 -107222113 + MLT2A2 LTR ERVL 202 554 0 264 210 39 63 chr11 41561364 41561517 -107221955 + MLT1B LTR MaLR 1 203 -187 2216 105 3 0 chr11 41561517 41561821 -107221651 + AluSp SINE Alu 1 305 -8 264 210 39 63 chr11 41561821 41561885 -107221587 + MLT1B LTR MaLR 203 267 -123 321 100 0 0 chr11 41562073 41562123 -107221349 + (GGA)n Simple_repeat Simple_repeat 3 52 0 772 310 112 66 chr11 41562153 41562714 -107220758 + MLT1E LTR MaLR 3 589 -4 230 289 78 7 chr11 41562920 41563062 -107220410 + L1MCc LINE L1 1375 1526 -4897 25 31 0 0 chr11 41563138 41563170 -107220302 + AT_rich Low_complexity Low_complexity 1 32 0 277 278 87 52 chr11 41563242 41563415 -107220057 + L1MCc LINE L1 1869 2047 -4896 259 299 26 8 chr11 41563511 41563628 -107219844 + L1MCc LINE L1 2426 2544 -4578 317 329 14 41 chr11 41563688 41563834 -107219638 + L1MCc LINE L1 2640 2781 -4341 300 176 0 0 chr11 41563861 41563929 -107219543 + GA-rich Low_complexity Low_complexity 1 68 0 241 214 45 11 chr11 41563931 41564020 -107219452 + L1MCc LINE L1 2925 3016 -4106 477 195 62 55 chr11 41564218 41564393 -107219079 - L1ME2 LINE L1 -130 6034 5843 2233 99 3 0 chr11 41564468 41564770 -107218702 - AluSq SINE Alu -10 303 1 953 153 79 61 chr11 41565242 41565471 -107218001 - L1MA8 LINE L1 -162 6129 5897 416 204 40 79 chr11 41565464 41565616 -107217856 + L1MA8 LINE L1 6105 6250 -41 * 44 35 0 0 chr11 41566070 41566128 -107217344 + AT_rich Low_complexity Low_complexity 1 58 0 581 259 155 7 chr11 41567218 41567508 -107215964 - MER69 DNA AcHobo -186 2340 2008 682 315 69 77 chr11 41567522 41568042 -107215430 - MER69 DNA AcHobo -1984 542 27 16191 140 22 22 chr11 41568240 41568686 -107214786 + Tigger4(Zombi) DNA MER2_type 12 457 -2274 2193 137 0 0 chr11 41568686 41568999 -107214473 + AluSq SINE Alu 1 313 0 16191 140 22 22 chr11 41568999 41571272 -107212200 + Tigger4(Zombi) DNA MER2_type 456 2731 0 219 333 87 7 chr11 41571737 41571875 -107211597 - MIR SINE MIR -8 254 106 189 339 0 17 chr11 41572865 41572924 -107210548 - L2 LINE L2 0 3272 3215 237 178 0 0 chr11 41573564 41573609 -107209863 + (TG)n Simple_repeat Simple_repeat 1 45 0 26 0 0 0 chr11 41574107 41574133 -107209339 + AT_rich Low_complexity Low_complexity 1 26 0 222 357 102 6 chr11 41574826 41574983 -107208489 - MIR SINE MIR -17 245 74 2182 120 0 3 chr11 41575026 41575327 -107208145 - AluSp SINE Alu -13 300 1 1349 203 6 63 chr11 41575564 41575880 -107207592 + AluJo SINE Alu 1 298 -14 240 35 0 0 chr11 41576538 41576567 -107206905 + (A)n Simple_repeat Simple_repeat 1 29 0 1979 101 4 0 chr11 41576636 41576904 -107206568 - AluSg SINE Alu -11 299 31 596 326 54 8 chr11 41577169 41577408 -107206064 + MIR SINE MIR 5 254 -8 1888 216 22 7 chr11 41578525 41578984 -107204488 - L1 LINE L1 -1298 4848 4383 5100 148 40 16 chr11 41578989 41580124 -107203348 + L1PA16 LINE L1 5008 6166 0 334 114 57 0 chr11 41580208 41580296 -107203176 + (TA)n Simple_repeat Simple_repeat 2 94 0 35 63 0 0 chr11 41582357 41582420 -107201052 + AT_rich Low_complexity Low_complexity 1 63 0 1930 146 14 88 chr11 41583509 41583941 -107199531 + L1MA4 LINE L1 5896 6295 -5 30 77 0 0 chr11 41583988 41584053 -107199419 + AT_rich Low_complexity Low_complexity 1 65 0 1987 110 68 42 chr11 41584275 41584630 -107198842 - THE1B LTR MaLR 0 364 1 182 293 36 120 chr11 41584848 41585015 -107198457 - MER5A DNA MER1_type -1 188 36 1639 196 45 15 chr11 41585328 41585660 -107197812 + MLT1A1 LTR MaLR 24 365 0 1842 188 12 12 chr11 41586700 41587046 -107196426 + MER44D DNA MER2_type 184 584 -21 2665 99 8 0 chr11 41588555 41588927 -107194545 - THE1C LTR MaLR 0 375 1 24 53 0 0 chr11 41589654 41589692 -107193780 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr11 41589969 41589999 -107193473 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr11 41590108 41590136 -107193336 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr11 41590165 41590193 -107193279 + AT_rich Low_complexity Low_complexity 1 28 0 881 120 20 33 chr11 41590449 41590599 -107192873 + AluSg/x SINE Alu 165 312 0 3268 196 64 24 chr11 41591504 41592298 -107191174 - LTR1B LTR ERV1 0 826 1 23 54 0 0 chr11 41593036 41593073 -107190399 + AT_rich Low_complexity Low_complexity 1 37 0 233 283 22 36 chr11 41593109 41593205 -107190267 - MIR SINE MIR -103 105 37 576 266 94 107 chr11 41593929 41594670 -107188802 - L2 LINE L2 0 3313 2593 250 49 82 0 chr11 41595300 41595361 -107188111 + (TA)n Simple_repeat Simple_repeat 2 67 0 3043 222 22 32 chr11 41595361 41596144 -107187328 + L1PA15 LINE L1 3863 4637 -1509 5405 137 20 2 chr11 41596264 41597592 -107185880 + L1PA15 LINE L1 4821 6163 -2 2111 82 13 26 chr11 41597886 41598189 -107185283 + AluSx SINE Alu 1 299 -13 227 265 24 12 chr11 41598337 41598420 -107185052 + (TA)n Simple_repeat Simple_repeat 2 85 0 1758 135 12 0 chr11 41598585 41598844 -107184628 + AluSx SINE Alu 39 300 -12 186 329 49 0 chr11 41598930 41599012 -107184460 + L2 LINE L2 3220 3305 -8 21 0 0 0 chr11 41600176 41600197 -107183275 + AT_rich Low_complexity Low_complexity 1 21 0 317 262 36 0 chr11 41600332 41600416 -107183056 + CT-rich Low_complexity Low_complexity 1 87 0 519 258 0 0 chr11 41600479 41600599 -107182873 - FLAM_A SINE Alu -13 120 1 201 139 0 0 chr11 41600977 41601020 -107182452 + (CATA)n Simple_repeat Simple_repeat 2 44 0 6408 83 22 2 chr11 41601145 41602318 -107181154 + L1PA8 LINE L1 4974 6164 -8 778 289 28 14 chr11 41602945 41603156 -107180316 + MER58A DNA MER1_type 2 215 -9 802 185 14 7 chr11 41603293 41603439 -107180033 + FRAM SINE Alu 17 163 -13 425 244 0 0 chr11 41603449 41603531 -107179941 - MLT1F LTR MaLR -103 439 358 409 333 27 7 chr11 41603559 41603709 -107179763 - MLT1F LTR MaLR -389 153 1 722 283 9 35 chr11 41603882 41604112 -107179360 + MER58A DNA MER1_type 1 224 0 387 0 0 0 chr11 41604262 41604305 -107179167 + (CA)n Simple_repeat Simple_repeat 1 43 0 298 335 137 5 chr11 41605392 41605589 -107177883 - MIR SINE MIR -10 252 30 23 33 0 0 chr11 41606648 41606678 -107176794 + AT_rich Low_complexity Low_complexity 1 30 0 2530 192 29 50 chr11 41606720 41607335 -107176137 - MER7C DNA MER2_type 0 602 1 1659 178 64 3 chr11 41607677 41607991 -107175481 + MER1B DNA MER1_type 5 337 0 213 232 14 0 chr11 41608134 41608203 -107175269 + (TTTAA)n Simple_repeat Simple_repeat 3 72 0 226 266 106 62 chr11 41608523 41608636 -107174836 - L2 LINE L2 -31 3282 3165 2454 190 51 42 chr11 41609013 41609560 -107173912 - MLT2B3 LTR ERVL -2 552 1 23 0 0 0 chr11 41609821 41609844 -107173628 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr11 41609940 41609962 -107173510 + AT_rich Low_complexity Low_complexity 1 22 0 455 349 71 42 chr11 41610274 41610755 -107172717 + HAL1b LINE L1 76 570 -778 248 335 47 24 chr11 41610823 41611035 -107172437 + HAL1b LINE L1 680 896 -452 3964 126 43 52 chr11 41611120 41611912 -107171560 + LTR1 LTR ERV1 1 785 0 273 301 113 43 chr11 41612280 41612957 -107170515 + L1ME LINE L1 5041 5764 -406 290 26 26 0 chr11 41612979 41613018 -107170454 + (TA)n Simple_repeat Simple_repeat 1 40 0 1442 220 3 25 chr11 41613019 41613333 -107170139 - AluJo SINE Alu -5 307 1 776 319 106 24 chr11 41613589 41614163 -107169309 + L1MC4a LINE L1 5303 5923 -1885 404 267 61 6 chr11 41614289 41614469 -107169003 + L1M4 LINE L1 3317 3506 -2640 323 301 79 64 chr11 41615339 41615744 -107167728 + L1ME LINE L1 541 951 -5119 26 0 0 0 chr11 41616732 41616758 -107166714 + AT_rich Low_complexity Low_complexity 1 26 0 2120 151 16 19 chr11 41617968 41618333 -107165139 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr11 41618520 41618541 -107164931 + AT_rich Low_complexity Low_complexity 1 21 0 6632 73 3 0 chr11 41618541 41619691 -107163781 - L1PA6 LINE L1 0 6154 5017 1484 146 45 0 chr11 41619795 41620041 -107163431 + Tigger4(Zombi) DNA MER2_type 212 468 -2263 516 242 0 0 chr11 41620042 41620141 -107163331 + AluS SINE Alu 1 99 -214 12607 78 5 0 chr11 41620141 41621842 -107161630 - L1P LINE L1 -1232 4914 3205 210 37 0 0 chr11 41621842 41621869 -107161603 + (A)n Simple_repeat Simple_repeat 1 27 0 4018 156 5 38 chr11 41621978 41622749 -107160723 - L1P LINE L1 -2524 3622 2877 12952 153 25 34 chr11 41622963 41623925 -107159547 - Tigger1 DNA MER2_type 0 2418 1450 1646 122 93 11 chr11 41623925 41624204 -107159268 - AluSx SINE Alu -10 302 1 12952 153 25 34 chr11 41624204 41625678 -107157794 - Tigger1 DNA MER2_type -968 1450 2 354 171 0 0 chr11 41626247 41626317 -107157155 + (TG)n Simple_repeat Simple_repeat 1 70 0 2807 198 70 8 chr11 41626579 41627166 -107156306 - MER67B LTR ERV1 0 661 39 512 251 48 69 chr11 41627310 41627541 -107155931 + MLT1F LTR MaLR 317 542 0 288 310 146 0 chr11 41628626 41628784 -107154688 + MIR SINE MIR 58 238 -24 23 0 0 0 chr11 41629349 41629372 -107154100 + AT_rich Low_complexity Low_complexity 1 23 0 2043 152 75 26 chr11 41629515 41630023 -107153449 + MLT2A2 LTR ERVL 1 554 0 1701 158 40 62 chr11 41630568 41630941 -107152531 + MLT1A1 LTR MaLR 1 365 0 5055 186 30 46 chr11 41631075 41633200 -107150272 - L1PB4 LINE L1 -5 6151 4052 3229 172 101 17 chr11 41633539 41634246 -107149226 - LTR1B LTR ERV1 -3 782 1 3779 111 33 11 chr11 41634334 41635043 -107148429 + LTR17 LTR ERV1 1 773 -7 1306 224 32 0 chr11 41635074 41635169 -107148303 + AluSx SINE Alu 27 117 -195 459 0 0 0 chr11 41635169 41635220 -107148252 + (CA)n Simple_repeat Simple_repeat 2 52 0 1306 224 32 0 chr11 41635220 41635401 -107148071 + AluSx SINE Alu 117 312 0 2115 60 0 0 chr11 41635775 41636040 -107147432 - AluY SINE Alu -2 309 45 2015 204 34 9 chr11 41636267 41636708 -107146764 - LTR47A LTR ERVL 0 452 1 460 263 35 91 chr11 41637357 41637589 -107145883 + MIR SINE MIR 44 262 0 22 0 0 0 chr11 41638067 41638089 -107145383 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 41638168 41638189 -107145283 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr11 41638545 41638569 -107144903 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr11 41638630 41638654 -107144818 + AT_rich Low_complexity Low_complexity 1 24 0 2292 78 0 35 chr11 41638848 41639167 -107144305 + AluY SINE Alu 1 308 -3 308 180 0 0 chr11 41640340 41640401 -107143071 - L1MB1 LINE L1 0 6168 6108 249 224 0 0 chr11 41640400 41640458 -107143014 + L1M2 LINE L1 5827 5884 -428 * 260 348 51 22 chr11 41641423 41641561 -107141911 - MIR SINE MIR -71 191 50 5708 230 29 16 chr11 41641629 41643452 -107140020 - L1MB3 LINE L1 -7 6412 4549 3320 73 77 4 chr11 41643452 41643917 -107139555 - L1PA6 LINE L1 -4 6150 5652 5708 230 29 16 chr11 41643917 41644583 -107138889 - L1MB3 LINE L1 -1870 4549 3893 1392 260 17 3 chr11 41644587 41644933 -107138539 - MLT1A1 LTR MaLR 0 365 15 8996 220 68 40 chr11 41645034 41645879 -107137593 - L1MB3 LINE L1 -2569 3813 2994 1565 84 4 26 chr11 41645879 41646105 -107137367 + L1PA8 LINE L1 5949 6169 -3 8996 220 68 40 chr11 41646105 41648075 -107135397 - L1MB3 LINE L1 -3388 2994 862 1223 280 14 19 chr11 41648075 41648439 -107135033 + MLT1A1 LTR MaLR 4 365 0 8996 220 68 40 chr11 41648439 41649326 -107134146 - L1MB3 LINE L1 -5520 862 2 22 0 0 0 chr11 41650037 41650059 -107133413 + AT_rich Low_complexity Low_complexity 1 22 0 711 240 61 116 chr11 41650087 41650271 -107133201 + MLT2C1 LTR ERVL 1 157 -240 13870 44 13 0 chr11 41650271 41652758 -107130714 - L1PA4 LINE L1 -2 6153 3642 711 240 61 116 chr11 41652758 41652935 -107130537 + MLT2C1 LTR ERVL 157 342 -55 21 71 0 0 chr11 41653089 41653131 -107130341 + AT_rich Low_complexity Low_complexity 1 42 0 371 184 40 17 chr11 41653178 41653352 -107130120 + (TA)n Simple_repeat Simple_repeat 2 179 0 212 247 24 35 chr11 41653353 41653438 -107130034 + (CATATA)n Simple_repeat Simple_repeat 1 84 0 309 250 9 19 chr11 41653631 41653739 -107129733 + (TA)n Simple_repeat Simple_repeat 1 107 0 21 36 0 0 chr11 41653812 41653840 -107129632 + AT_rich Low_complexity Low_complexity 1 28 0 5361 212 43 15 chr11 41653989 41657911 -107125561 + L1MA9 LINE L1 1 3481 -2722 1982 244 10 0 chr11 41657916 41658425 -107125047 + L1MA9 LINE L1 4628 5141 -1062 2205 271 12 19 chr11 41658429 41659201 -107124271 + L1MB7 LINE L1 4540 5305 -841 1338 144 26 91 chr11 41659201 41659541 -107123931 + L1MA9 LINE L1 5994 6311 -1 * 1546 205 114 16 chr11 41659539 41660265 -107123207 + L1MB7 LINE L1 5319 6120 -64 7666 147 9 11 chr11 41660266 41661415 -107122057 + HSMAR2 DNA Mariner 2 1149 -153 2109 112 10 13 chr11 41661415 41661727 -107121745 - AluSp SINE Alu -2 311 1 7666 147 9 11 chr11 41661727 41661877 -107121595 + HSMAR2 DNA Mariner 1149 1298 -4 2270 77 3 10 chr11 41661903 41662200 -107121272 + AluSx SINE Alu 3 297 -15 2740 198 53 36 chr11 41662200 41662616 -107120856 + L1MA9 LINE L1 5167 5575 -794 2400 155 23 35 chr11 41662616 41663007 -107120465 + MSTA LTR MaLR 1 389 -39 2111 106 3 0 chr11 41663007 41663332 -107120140 - AluY SINE Alu 0 326 1 2400 155 23 35 chr11 41663332 41663372 -107120100 + MSTA LTR MaLR 389 428 0 2740 198 53 36 chr11 41663372 41663818 -107119654 + L1MA9 LINE L1 5575 6044 -325 4018 102 13 2 chr11 41663822 41664379 -107119093 - HERVL-A1 LTR ERVL -702 4952 4390 562 99 176 0 chr11 41664485 41664507 -107118965 - MLT2A1 LTR ERVL -18 426 409 365 86 17 0 chr11 41664507 41664565 -107118907 + (TA)n Simple_repeat Simple_repeat 2 60 0 562 99 176 0 chr11 41664565 41664633 -107118839 - MLT2A1 LTR ERVL -35 409 320 31654 97 8 0 chr11 41664635 41668902 -107114570 - HERVL-A1 LTR ERVL -1354 4300 1 2790 107 42 7 chr11 41668902 41669331 -107114141 - MLT2A1 LTR ERVL 0 444 1 22 94 0 0 chr11 41669457 41669521 -107113951 + AT_rich Low_complexity Low_complexity 1 64 0 1694 50 4 38 chr11 41670028 41670266 -107113206 - L1PA5 LINE L1 0 6154 5925 321 68 0 0 chr11 41670474 41670518 -107112954 + (CA)n Simple_repeat Simple_repeat 1 44 0 22 0 0 0 chr11 41670831 41670853 -107112619 + AT_rich Low_complexity Low_complexity 1 22 0 230 20 41 41 chr11 41672415 41672464 -107111008 + (TTA)n Simple_repeat Simple_repeat 3 51 0 2184 148 8 16 chr11 41673457 41673835 -107109637 - L1PA16 LINE L1 -9 6157 5783 477 43 64 43 chr11 41673846 41673987 -107109485 + (TA)n Simple_repeat Simple_repeat 2 145 0 250 153 0 17 chr11 41673992 41674051 -107109421 + LTR66 LTR ERVL 407 464 -146 384 129 0 4 chr11 41674051 41674113 -107109359 - L1PA16 LINE L1 -409 5752 5693 30 45 0 0 chr11 41675853 41675897 -107107575 + AT_rich Low_complexity Low_complexity 1 44 0 5229 153 6 3 chr11 41675899 41676769 -107106703 + L1PA16 LINE L1 5290 6161 -5 2174 89 0 0 chr11 41678793 41679074 -107104398 + AluSq SINE Alu 1 281 -32 381 356 80 5 chr11 41680411 41680599 -107102873 + MIR3 SINE MIR 6 207 -1 189 333 28 62 chr11 41680672 41680816 -107102656 + MIR SINE MIR 51 189 -73 416 335 24 0 chr11 41681595 41681759 -107101713 + MIR SINE MIR 91 258 -4 702 194 10 77 chr11 41681759 41681955 -107101517 + L1PB4 LINE L1 5969 6151 -5 2075 135 3 3 chr11 41682033 41682345 -107101127 - AluSx SINE Alu 0 312 1 210 354 0 68 chr11 41682555 41682716 -107100756 - L2 LINE L2 -233 3039 2890 215 178 22 0 chr11 41684808 41684853 -107098619 + (TA)n Simple_repeat Simple_repeat 2 47 0 345 230 22 65 chr11 41685538 41685653 -107097819 + MER5A DNA MER1_type 4 112 -77 388 275 64 35 chr11 41685894 41686002 -107097470 + MER5B DNA MER1_type 1 117 -61 693 36 0 0 chr11 41686002 41686086 -107097386 + (TA)n Simple_repeat Simple_repeat 2 85 0 388 275 64 35 chr11 41686086 41686148 -107097324 + MER5B DNA MER1_type 117 176 -2 2383 264 72 15 chr11 41686489 41687425 -107096047 - L1M4 LINE L1 -1947 4199 3211 501 222 0 0 chr11 41687429 41687537 -107095935 - L1MCa LINE L1 -4604 1822 1715 189 0 0 0 chr11 41688520 41688541 -107094931 + (CA)n Simple_repeat Simple_repeat 2 22 0 237 356 94 6 chr11 41688603 41688763 -107094709 - MIR SINE MIR -11 251 78 488 339 44 32 chr11 41688934 41689182 -107094290 + MIR SINE MIR 6 256 -6 319 305 57 0 chr11 41689225 41689330 -107094142 - MIR SINE MIR -80 182 72 591 265 22 16 chr11 41689388 41689573 -107093899 + MER5A DNA MER1_type 4 189 0 387 0 0 0 chr11 41689744 41689787 -107093685 + (TG)n Simple_repeat Simple_repeat 2 44 0 1789 158 13 3 chr11 41690934 41691237 -107092235 + AluJo SINE Alu 1 306 -6 3794 210 41 15 chr11 41691375 41692261 -107091211 - L1MB5 LINE L1 -9 6165 5257 249 261 31 15 chr11 41692307 41692372 -107091100 - MIR SINE MIR -82 126 61 189 0 0 0 chr11 41692530 41692551 -107090921 + (TC)n Simple_repeat Simple_repeat 2 22 0 209 270 54 14 chr11 41692643 41692717 -107090755 + MIR SINE MIR 156 232 -30 6394 166 37 13 chr11 41692837 41694106 -107089366 + HSMAR2 DNA Mariner 1 1300 -2 340 195 51 102 chr11 41694156 41694274 -107089198 + L2 LINE L2 3167 3278 -35 224 313 18 13 chr11 41694345 41694460 -107089012 - MIR SINE MIR -59 203 88 1767 135 4 0 chr11 41694970 41695230 -107088242 - AluSq SINE Alu -18 295 35 200 294 11 87 chr11 41695325 41695417 -107088055 + MIR SINE MIR 67 151 -57 377 325 110 26 chr11 41696258 41696384 -107087088 - L1ME LINE L1 -362 5808 5694 7011 61 0 4 chr11 41696384 41697367 -107086105 - L1PA7 LINE L1 0 6154 5174 377 325 110 26 chr11 41697367 41697548 -107085924 - L1ME LINE L1 -476 5694 5475 207 64 85 21 chr11 41698898 41698945 -107084527 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 257 135 19 0 chr11 41698956 41699008 -107084464 + CT-rich Low_complexity Low_complexity 2 54 0 23 33 0 0 chr11 41699908 41699938 -107083534 + AT_rich Low_complexity Low_complexity 1 30 0 248 273 0 11 chr11 41699983 41700071 -107083401 + (CATATA)n Simple_repeat Simple_repeat 4 90 0 725 240 10 51 chr11 41701565 41701761 -107081711 + MLT1A1 LTR MaLR 6 193 -172 941 219 41 0 chr11 41701771 41701967 -107081505 + MLT1A1 LTR MaLR 162 365 0 22 56 0 0 chr11 41702028 41702064 -107081408 + AT_rich Low_complexity Low_complexity 1 36 0 234 105 0 0 chr11 41702217 41702255 -107081217 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 499 205 168 26 chr11 41702277 41702467 -107081005 + L1MD3 LINE L1 6702 6918 -1077 530 308 85 5 chr11 41702688 41702912 -107080560 + L1ME LINE L1 290 531 -5539 213 94 0 0 chr11 41702917 41702949 -107080523 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 196 143 36 0 chr11 41703001 41703057 -107080415 + (TA)n Simple_repeat Simple_repeat 1 58 0 281 346 0 7 chr11 41703283 41703436 -107080036 + L1M4 LINE L1 3425 3576 -2570 387 116 0 158 chr11 41703834 41703929 -107079543 + MADE1 DNA Mariner 1 80 0 228 35 0 0 chr11 41704925 41704954 -107078518 + (TG)n Simple_repeat Simple_repeat 2 30 0 199 288 119 51 chr11 41705533 41705651 -107077821 - MIR SINE MIR -63 145 20 406 297 74 40 chr11 41706135 41706337 -107077135 + L2 LINE L2 3008 3216 -97 1757 208 75 2 chr11 41706432 41706831 -107076641 - MSTA LTR MaLR 0 428 1 4488 231 44 20 chr11 41706838 41707892 -107075580 - MSTA-int LTR MaLR -58 1593 515 1410 135 153 72 chr11 41707892 41708239 -107075233 - THE1C LTR MaLR 0 375 1 2664 173 42 0 chr11 41708239 41708736 -107074736 - MSTA-int LTR MaLR -1132 519 2 1777 182 103 5 chr11 41708737 41709127 -107074345 - MSTA LTR MaLR 0 428 1 408 118 0 0 chr11 41709385 41709453 -107074019 + (CA)n Simple_repeat Simple_repeat 1 68 0 26 64 0 0 chr11 41710329 41710376 -107073096 + AT_rich Low_complexity Low_complexity 1 47 0 3759 71 4 0 chr11 41710540 41711034 -107072438 - L1PA8 LINE L1 -2 6170 5675 21 71 0 0 chr11 41711101 41711143 -107072329 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chr11 41712206 41712236 -107071236 + AT_rich Low_complexity Low_complexity 1 30 0 255 266 101 9 chr11 41715192 41715301 -107068171 + LTR67 LTR ERVL 437 555 -2 331 321 75 21 chr11 41716534 41716721 -107066751 + MER115 DNA AcHobo 45 241 -452 289 293 40 0 chr11 41716942 41717041 -107066431 + MER115 DNA AcHobo 590 692 -1 25 0 0 0 chr11 41717632 41717657 -107065815 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr11 41717835 41717863 -107065609 + AT_rich Low_complexity Low_complexity 1 28 0 322 322 29 29 chr11 41717948 41718122 -107065350 - L1ME LINE L1 -418 5703 5530 2145 83 37 7 chr11 41718124 41718424 -107065048 - AluSg1 SINE Alu 0 309 1 440 277 118 46 chr11 41719507 41719745 -107063727 - MIR SINE MIR -5 257 3 230 367 34 51 chr11 41719846 41720023 -107063449 - MIR3 SINE MIR -1 207 34 2820 33 0 0 chr11 41720490 41720820 -107062652 + L1PA4 LINE L1 5763 6092 -63 399 324 65 37 chr11 41721498 41721819 -107061653 + L1ME4a LINE L1 5637 5966 -155 214 299 287 6 chr11 41723329 41723486 -107059986 - MIR SINE MIR -56 206 6 353 331 28 14 chr11 41723568 41723713 -107059759 + L2 LINE L2 3167 3313 0 1683 222 14 3 chr11 41724209 41724570 -107058902 - MLT1A1 LTR MaLR 0 365 1 982 212 73 40 chr11 41725126 41725179 -107058293 + MLT1C LTR MaLR 36 86 -381 1896 156 0 10 chr11 41725179 41725506 -107057966 + AluSx SINE Alu 1 312 0 982 212 73 40 chr11 41725506 41725726 -107057746 + MLT1C LTR MaLR 86 318 -149 1554 217 35 16 chr11 41725779 41726187 -107057285 + MER61D LTR ERV1 14 501 0 550 208 0 74 chr11 41726200 41726229 -107057243 + MLT1C LTR MaLR 330 360 -107 5647 93 22 4 chr11 41726229 41726995 -107056477 - LTR17 LTR ERV1 0 780 1 550 208 0 74 chr11 41726995 41727114 -107056358 + MLT1C LTR MaLR 360 467 0 333 309 109 38 chr11 41727526 41727736 -107055736 - MIR SINE MIR -17 245 21 344 252 117 9 chr11 41728615 41728726 -107054746 + MIR SINE MIR 14 136 -126 237 65 0 0 chr11 41728991 41729022 -107054450 + (TTA)n Simple_repeat Simple_repeat 1 31 0 392 0 21 0 chr11 41730536 41730584 -107052888 + (CA)n Simple_repeat Simple_repeat 1 49 0 261 251 17 84 chr11 41731220 41731399 -107052073 - L1MC5 LINE L1 -186 7775 7609 22 0 0 0 chr11 41731438 41731460 -107052012 + AT_rich Low_complexity Low_complexity 1 22 0 1128 186 15 0 chr11 41732121 41732320 -107051152 - AluJo SINE Alu -56 256 55 4836 130 35 14 chr11 41732323 41733087 -107050385 + LTR17 LTR ERV1 1 780 0 4803 117 3 23 chr11 41733087 41733791 -107049681 + HERV17 LTR ERV1 2 691 -7935 7642 67 1 4 chr11 41734022 41734984 -107048488 + HERV17 LTR ERV1 1056 2014 -6612 * 10063 64 21 18 chr11 41734969 41736290 -107047182 + HERV17 LTR ERV1 2430 3754 -4872 4871 52 2 3 chr11 41736269 41736882 -107046590 + HERV17 LTR ERV1 5405 6016 -2610 * 2266 78 0 3 chr11 41736907 41737200 -107046272 + HERV17 LTR ERV1 8335 8626 0 4982 132 17 10 chr11 41737200 41737975 -107045497 + LTR17 LTR ERV1 1 780 0 1744 163 36 39 chr11 41738099 41738436 -107045036 - MER1B DNA MER1_type -1 336 1 339 226 2 0 chr11 41738677 41738774 -107044698 - L1MA8 LINE L1 -2 6289 6192 658 299 57 15 chr11 41738797 41739255 -107044217 - L1M4 LINE L1 -2938 3706 3230 2304 160 65 0 chr11 41739257 41739656 -107043816 - MSTB LTR MaLR -1 425 1 459 283 78 37 chr11 41739745 41740179 -107043293 - L1M4 LINE L1 -3630 3014 2605 312 324 7 29 chr11 41740322 41740461 -107043011 - L1M4 LINE L1 -4411 2414 2279 389 290 58 64 chr11 41740503 41740958 -107042514 - L1M4 LINE L1 -4755 2070 1473 1777 209 78 18 chr11 41741058 41741546 -107041926 - L1MD3 LINE L1 -82 7913 7397 237 257 54 0 chr11 41741555 41741629 -107041843 + MLT1G1 LTR MaLR 502 579 -16 26 0 0 0 chr11 41743126 41743152 -107040320 + AT_rich Low_complexity Low_complexity 1 26 0 14281 137 15 30 chr11 41745392 41747128 -107036344 - Tigger1 DNA MER2_type -61 2357 668 1929 129 0 28 chr11 41747128 41747414 -107036058 - AluSg SINE Alu -30 280 3 14281 137 15 30 chr11 41747414 41748072 -107035400 - Tigger1 DNA MER2_type -1750 668 1 203 349 0 0 chr11 41748090 41748156 -107035316 - L2 LINE L2 -589 2725 2660 1577 200 10 3 chr11 41748250 41748550 -107034922 + AluJo SINE Alu 11 312 0 1197 278 119 21 chr11 41748766 41749237 -107034235 + MLT1F LTR MaLR 24 540 -2 380 346 147 21 chr11 41749262 41749744 -107033728 - L2 LINE L2 -962 2352 1810 542 220 30 0 chr11 41750294 41750394 -107033078 + Tigger3(Golem) DNA MER2_type 14 116 -2913 5826 158 77 13 chr11 41750973 41752117 -107031355 - Tigger3b DNA MER2_type -1 1230 14 22 35 0 0 chr11 41752214 41752243 -107031229 + AT_rich Low_complexity Low_complexity 1 29 0 1182 257 126 13 chr11 41752336 41752733 -107030739 - MLT1E2 LTR MaLR -74 552 111 2518 59 3 0 chr11 41754858 41755163 -107028309 + AluY SINE Alu 1 306 -5 268 292 100 17 chr11 41755507 41755627 -107027845 - MIR SINE MIR -25 237 108 1073 331 106 2 chr11 41757334 41757835 -107025637 - MLT1H1 LTR MaLR 0 555 3 3038 93 12 5 chr11 41758003 41758413 -107025059 + MLT2A2 LTR ERVL 1 413 -40 21 36 0 0 chr11 41758429 41758457 -107025015 + AT_rich Low_complexity Low_complexity 1 28 0 244 118 118 0 chr11 41758470 41758521 -107024951 + MLT2A2 LTR ERVL 397 453 0 31568 82 5 23 chr11 41758522 41762791 -107020681 + HERVL-A2 LTR ERVL 2 4195 -1459 1986 96 4 4 chr11 41764111 41764372 -107019100 - AluSg SINE Alu -37 273 13 2436 40 7 3 chr11 41765003 41765299 -107018173 - AluY SINE Alu -14 297 1 14533 191 24 35 chr11 41765837 41768516 -107014956 - L1MA3 LINE L1 -3 7721 5014 1172 61 17 17 chr11 41768516 41768696 -107014776 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 14533 191 24 35 chr11 41768696 41772063 -107011409 - L1MA3 LINE L1 -2710 5014 1795 2421 72 0 10 chr11 41772063 41772368 -107011104 - AluY SINE Alu -9 302 1 14533 191 24 35 chr11 41772368 41774130 -107009342 - L1MA3 LINE L1 -5929 1795 15 202 321 31 44 chr11 41775960 41776119 -107007353 - MIR SINE MIR 0 262 106 553 286 153 60 chr11 41777033 41777484 -107005988 + MLT1G1 LTR MaLR 90 582 -13 26 50 0 0 chr11 41778763 41778803 -107004669 + AT_rich Low_complexity Low_complexity 1 40 0 341 222 11 22 chr11 41779391 41779481 -107003991 + MER96B DNA MER1_type? 142 230 -187 2210 110 0 10 chr11 41780345 41780646 -107002826 + AluSc SINE Alu 1 298 -11 377 151 0 14 chr11 41780646 41780712 -107002760 + GA-rich Low_complexity Low_complexity 6 72 0 312 27 0 0 chr11 41780710 41780747 -107002725 + (TAA)n Simple_repeat Simple_repeat 2 38 0 * 531 205 20 73 chr11 41780747 41780898 -107002574 - MLT1C LTR MaLR -319 148 6 204 306 42 49 chr11 41782617 41782761 -107000711 - L2 LINE L2 -214 3058 2916 238 191 21 0 chr11 41784093 41784145 -106999327 + CT-rich Low_complexity Low_complexity 1 53 0 222 118 0 0 chr11 41784246 41784280 -106999192 + (TA)n Simple_repeat Simple_repeat 2 35 0 286 269 25 67 chr11 41784680 41784799 -106998673 - MIR SINE MIR -113 149 36 285 317 21 41 chr11 41785100 41785245 -106998227 + MIR SINE MIR 65 206 -56 197 365 58 29 chr11 41786337 41786441 -106997031 - MIR SINE MIR -60 148 42 301 291 34 122 chr11 41787576 41787813 -106995659 - MIR SINE MIR -4 258 43 241 304 13 13 chr11 41789470 41789549 -106993923 - MIR SINE MIR -5 257 179 499 313 55 0 chr11 41789839 41790002 -106993470 - MIR SINE MIR -70 192 21 21 0 0 0 chr11 41790494 41790515 -106992957 + AT_rich Low_complexity Low_complexity 1 21 0 32 57 0 0 chr11 41791197 41791250 -106992222 + AT_rich Low_complexity Low_complexity 1 53 0 1313 290 57 28 chr11 41791570 41792146 -106991326 - MLT1E LTR MaLR 0 593 1 777 209 0 19 chr11 41792271 41792429 -106991043 + FAM SINE Alu 9 163 -22 220 188 29 0 chr11 41792435 41792504 -106990968 + (TA)n Simple_repeat Simple_repeat 1 71 0 288 274 97 59 chr11 41793026 41793212 -106990260 + MIR SINE MIR 26 218 -44 332 360 25 50 chr11 41795290 41795529 -106987943 + MIR SINE MIR 14 246 -16 260 366 60 14 chr11 41795623 41795839 -106987633 - L3 LINE CR1 -271 1306 1081 260 252 0 19 chr11 41796127 41796230 -106987242 + L1MC4 LINE L1 6603 6703 -1339 244 107 54 0 chr11 41796185 41796241 -106987231 - L1MCa LINE L1 -4362 2064 2006 * 249 369 50 50 chr11 41796289 41796511 -106986961 - L3 LINE CR1 -752 825 604 1928 121 29 0 chr11 41796594 41796897 -106986575 - AluSx SINE Alu 0 313 3 242 351 149 5 chr11 41797762 41797950 -106985522 - MIR SINE MIR 0 262 48 3020 210 37 46 chr11 41798080 41798912 -106984560 - LTR1B LTR ERV1 -1 825 1 381 256 23 53 chr11 41799381 41799514 -106983958 - MLT1I LTR MaLR -6 403 275 416 231 8 43 chr11 41799583 41799700 -106983772 + MLT1I LTR MaLR 283 395 -14 232 313 89 18 chr11 41799760 41799872 -106983600 + MER5B DNA MER1_type 3 122 -56 307 335 180 27 chr11 41801123 41801496 -106981976 - L2 LINE L2 -67 3246 2817 * 458 331 97 32 chr11 41801467 41801745 -106981727 - L2 LINE L2 -1954 1360 1065 22 70 0 0 chr11 41801947 41801990 -106981482 + AT_rich Low_complexity Low_complexity 1 43 0 265 286 27 0 chr11 41802327 41802439 -106981033 + (TA)n Simple_repeat Simple_repeat 2 116 0 182 191 0 44 chr11 41802446 41802514 -106980958 + (CATATA)n Simple_repeat Simple_repeat 1 65 0 1815 187 12 52 chr11 41802561 41802893 -106980579 - MER31A LTR ERV1 -79 406 93 3408 147 7 89 chr11 41802893 41803646 -106979826 + LTR8 LTR ERV1 1 691 0 1815 187 12 52 chr11 41803646 41803736 -106979736 - MER31A LTR ERV1 -392 93 1 203 243 200 0 chr11 41803915 41803985 -106979487 + MIR SINE MIR 58 141 -121 313 229 26 20 chr11 41804396 41804549 -106978923 + CT-rich Low_complexity Low_complexity 3 156 0 205 182 0 0 chr11 41804738 41804782 -106978690 + T-rich Low_complexity Low_complexity 4 47 0 23 0 0 0 chr11 41805036 41805059 -106978413 + AT_rich Low_complexity Low_complexity 1 23 0 27 73 0 0 chr11 41805295 41805350 -106978122 + AT_rich Low_complexity Low_complexity 1 55 0 2306 116 50 14 chr11 41805960 41806322 -106977150 + THE1C LTR MaLR 1 375 0 1371 167 147 0 chr11 41807569 41807827 -106975645 + AluSx SINE Alu 3 298 -4 1013 212 121 54 chr11 41807853 41808225 -106975247 - MER39 LTR ERV1 0 707 311 271 242 71 20 chr11 41810065 41810164 -106973308 + MLT1I LTR MaLR 296 399 -10 336 275 126 30 chr11 41811958 41812125 -106971347 + MER5A DNA MER1_type 7 189 0 183 315 74 0 chr11 41812125 41812179 -106971293 - L2 LINE L2 -19 3294 3237 342 298 196 0 chr11 41813613 41813781 -106969691 + MIR SINE MIR 51 251 -11 2151 73 21 3 chr11 41813790 41814076 -106969396 + AluY SINE Alu 1 291 -20 21 0 0 0 chr11 41814078 41814099 -106969373 + AT_rich Low_complexity Low_complexity 1 21 0 232 279 37 88 chr11 41814631 41814767 -106968705 + MIR SINE MIR 78 206 -56 196 313 12 24 chr11 41815323 41815406 -106968066 + MIR SINE MIR 181 262 0 377 238 96 136 chr11 41815739 41816366 -106967106 - L1MC5 LINE L1 -241 7720 7119 33 25 0 0 chr11 41816439 41816479 -106966993 + AT_rich Low_complexity Low_complexity 1 40 0 293 336 9 9 chr11 41817423 41817530 -106965942 - MIR SINE MIR -103 159 53 21 0 0 0 chr11 41818856 41818877 -106964595 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr11 41819360 41819392 -106964080 + AT_rich Low_complexity Low_complexity 1 32 0 243 0 0 0 chr11 41819711 41819738 -106963734 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 228 295 42 72 chr11 41820073 41820239 -106963233 - MIR SINE MIR -56 206 46 22 56 0 0 chr11 41820556 41820592 -106962880 + AT_rich Low_complexity Low_complexity 1 36 0 306 290 19 19 chr11 41820598 41820705 -106962767 + MIR SINE MIR 110 216 -46 231 36 0 0 chr11 41820847 41820875 -106962597 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1988 177 30 39 chr11 41820980 41821533 -106961939 + MLT2A2 LTR ERVL 1 554 0 23 108 0 0 chr11 41822103 41822196 -106961276 + AT_rich Low_complexity Low_complexity 1 93 0 215 30 0 30 chr11 41822537 41822570 -106960902 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 26 30 0 0 chr11 41822892 41822925 -106960547 + AT_rich Low_complexity Low_complexity 1 33 0 2088 124 0 3 chr11 41823104 41823394 -106960078 + AluSx SINE Alu 1 289 -23 4872 218 74 3 chr11 41823446 41824427 -106959045 + L1PA13 LINE L1 1 1051 -5736 3285 132 26 0 chr11 41824436 41824974 -106958498 + L1PA13 LINE L1 5601 6152 -11 323 275 38 71 chr11 41825023 41825234 -106958238 - L2 LINE L2 0 3313 3110 418 324 80 51 chr11 41825303 41825676 -106957796 - L2 LINE L2 -769 2545 2162 2683 96 0 0 chr11 41826163 41826518 -106956954 - THE1A LTR MaLR 0 355 1 11269 97 5 20 chr11 41826518 41827624 -106955848 - THE1A-int LTR MaLR 0 1580 504 2053 107 13 41 chr11 41827624 41827941 -106955531 - AluSg SINE Alu 0 310 3 11269 97 5 20 chr11 41827941 41828438 -106955034 - THE1A-int LTR MaLR -1076 504 1 2494 119 6 0 chr11 41828438 41828791 -106954681 - THE1A LTR MaLR 0 355 1 306 180 0 0 chr11 41828927 41828988 -106954484 + (CA)n Simple_repeat Simple_repeat 2 62 0 241 313 137 8 chr11 41829246 41829377 -106954095 - L2 LINE L2 -4 3268 3121 22 80 0 0 chr11 41829471 41829521 -106953951 + AT_rich Low_complexity Low_complexity 1 50 0 275 146 18 0 chr11 41830221 41830276 -106953196 + CT-rich Low_complexity Low_complexity 4 59 0 432 37 0 0 chr11 41830320 41830374 -106953098 + (CA)n Simple_repeat Simple_repeat 2 55 0 458 234 0 28 chr11 41832170 41832277 -106951195 + MER5A DNA MER1_type 3 106 -83 215 247 176 35 chr11 41832954 41833039 -106950433 + L2 LINE L2 3141 3237 -76 183 306 65 16 chr11 41833122 41833184 -106950288 + MIR SINE MIR 82 146 -62 347 255 20 10 chr11 41833194 41833292 -106950180 + MER89 LTR ERV1 1 99 -460 1557 196 30 24 chr11 41833334 41833540 -106949932 + MER89 LTR ERV1 226 436 -123 1746 202 33 25 chr11 41833540 41833902 -106949570 + MLT1A1 LTR MaLR 1 365 0 1557 196 30 24 chr11 41833902 41834027 -106949445 + MER89 LTR ERV1 436 559 0 1187 291 17 10 chr11 41834358 41834763 -106948709 + MER97c DNA MER1_type? 250 657 -433 554 110 65 160 chr11 41834772 41834972 -106948500 - MER53 DNA DNA 0 189 9 229 161 54 0 chr11 41834986 41835042 -106948430 + MER97a DNA MER1_type? 664 722 -172 4647 207 68 14 chr11 41835257 41836691 -106946781 + L1MC1 LINE L1 4820 6333 0 22 0 0 0 chr11 41837216 41837238 -106946234 + AT_rich Low_complexity Low_complexity 1 22 0 290 331 98 12 chr11 41838007 41838170 -106945302 - MIR SINE MIR -34 228 52 1075 234 20 31 chr11 41838172 41838523 -106944949 - LTR37A LTR ERV1 -2 424 78 268 280 20 0 chr11 41840118 41840218 -106943254 - L1MEc LINE L1 -4753 1643 1542 751 115 62 31 chr11 41840669 41840799 -106942673 - MER61E LTR ERV1 0 569 436 439 151 209 0 chr11 41840831 41840917 -106942555 - LTR25 LTR ERV1 -275 519 416 358 129 157 0 chr11 41841145 41841215 -106942257 - MER61E LTR ERV1 -484 85 5 328 304 89 18 chr11 41841264 41841432 -106942040 - L1ME LINE L1 -330 5791 5612 327 305 84 25 chr11 41841499 41841702 -106941770 - L1ME LINE L1 -2320 5488 5274 36 40 0 0 chr11 41841798 41841848 -106941624 + AT_rich Low_complexity Low_complexity 1 50 0 29 78 0 0 chr11 41842253 41842317 -106941155 + AT_rich Low_complexity Low_complexity 1 64 0 912 109 7 14 chr11 41842576 41842723 -106940749 + L1PA8 LINE L1 6026 6171 -1 607 163 65 20 chr11 41843170 41843323 -106940149 + MER53 DNA DNA 4 163 -26 11196 101 5 4 chr11 41843429 41845860 -106937612 - L1PA8 LINE L1 0 6172 3735 21 0 0 0 chr11 41847037 41847058 -106936414 + AT_rich Low_complexity Low_complexity 1 21 0 624 259 59 38 chr11 41847086 41847325 -106936147 - L1ME3A LINE L1 0 6170 5927 1588 221 2 86 chr11 41847338 41847794 -106935678 - MER34 LTR ERV1 0 542 125 508 317 123 4 chr11 41847886 41848113 -106935359 - L1ME3A LINE L1 -406 5764 5511 343 307 83 31 chr11 41848143 41848341 -106935131 - MIR SINE MIR -18 244 39 288 250 42 69 chr11 41848433 41848577 -106934895 - MIR SINE MIR -24 238 99 434 276 43 0 chr11 41848628 41848744 -106934728 + L2 LINE L2 3193 3313 0 203 409 35 0 chr11 41849023 41849138 -106934334 - L2 LINE L2 0 3272 3154 205 300 56 0 chr11 41849140 41849230 -106934242 + MIR SINE MIR 97 191 -71 189 0 0 0 chr11 41849490 41849511 -106933961 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 835 291 112 21 chr11 41849588 41849973 -106933499 - MER57B LTR ERV1 -5 429 10 195 306 71 31 chr11 41850517 41850615 -106932857 - L2 LINE L2 0 3272 3171 180 77 0 0 chr11 41851065 41851091 -106932381 + (CTTG)n Simple_repeat Simple_repeat 2 27 0 39 95 0 0 chr11 41852552 41852668 -106930804 + AT_rich Low_complexity Low_complexity 1 116 0 672 209 0 31 chr11 41855287 41855416 -106928056 + FLAM_C SINE Alu 3 127 -16 472 293 125 21 chr11 41855677 41856101 -106927371 + L1M4 LINE L1 3798 4265 -1881 481 346 118 40 chr11 41856219 41857001 -106926471 + L1M4 LINE L1 4399 5241 -905 850 203 50 15 chr11 41857255 41857457 -106926015 - MLT1C LTR MaLR -2 465 257 29850 118 11 25 chr11 41857627 41864044 -106919428 - L1PA7 LINE L1 -66 6403 2 2119 171 3 3 chr11 41864098 41864460 -106919012 - THE1B LTR MaLR -2 362 1 9111 139 35 26 chr11 41864460 41866019 -106917453 - THE1C-int LTR MaLR 0 1580 5 2585 128 3 0 chr11 41866024 41866398 -106917074 - THE1C LTR MaLR 0 375 1 225 94 0 0 chr11 41866448 41866480 -106916992 + (A)n Simple_repeat Simple_repeat 1 32 0 1781 183 27 18 chr11 41867353 41867686 -106915786 - MER1B DNA MER1_type -1 336 1 827 209 45 25 chr11 41868099 41868300 -106915172 - MER3 DNA MER1_type -4 205 1 2136 106 7 0 chr11 41868621 41868914 -106914558 + AluSx SINE Alu 1 295 -17 483 185 7 74 chr11 41870217 41870352 -106913120 + MLT1E2 LTR MaLR 64 189 -437 3206 19 0 0 chr11 41870352 41870719 -106912753 + L1PA3 LINE L1 5644 6010 -145 12749 126 27 21 chr11 41870719 41872422 -106911050 - LOR1-int LTR ERV1 -3284 4836 3115 1847 169 6 28 chr11 41872422 41872741 -106910731 - AluJo SINE Alu 0 312 1 12749 126 27 21 chr11 41872741 41873271 -106910201 - LOR1-int LTR ERV1 -5005 3115 2590 2118 175 7 19 chr11 41873284 41873968 -106909504 - MER52A LTR ERV1 -374 1381 1 8816 125 22 30 chr11 41873968 41875607 -106907865 - LOR1a-int LTR ERV1 -6485 1635 1 2889 168 8 2 chr11 41875607 41876100 -106907372 - LOR1a LTR ERV1 0 497 2 22 35 0 0 chr11 41877941 41877970 -106905502 + AT_rich Low_complexity Low_complexity 1 29 0 53 69 0 0 chr11 41878186 41878288 -106905184 + AT_rich Low_complexity Low_complexity 1 102 0 190 299 93 10 chr11 41878571 41878668 -106904804 - L2 LINE L2 -1 3312 3208 8963 93 6 4 chr11 41878768 41880021 -106903451 - L1P LINE L1 -977 5169 3912 2583 14 0 0 chr11 41880021 41880317 -106903155 - L1PA2 LINE L1 0 6155 5860 8963 93 6 4 chr11 41880317 41880342 -106903130 - L1P LINE L1 -2234 3912 3889 8001 109 7 6 chr11 41880443 41881668 -106901804 - L1P LINE L1 -1445 4701 3475 268 229 0 0 chr11 41881668 41881729 -106901743 + MLT1E3 LTR MaLR 562 622 -2 682 289 47 8 chr11 41881773 41882008 -106901464 - MIR SINE MIR -5 257 14 220 207 11 35 chr11 41882399 41882486 -106900986 + T-rich Low_complexity Low_complexity 5 89 0 228 224 53 13 chr11 41883510 41883586 -106899886 + L1M4b LINE L1 1462 1540 -5319 321 308 110 17 chr11 41883802 41884094 -106899378 + L1M4b LINE L1 1825 2143 -4816 289 310 47 53 chr11 41884210 41884571 -106898901 + L1M4b LINE L1 2673 3031 -4107 345 47 0 0 chr11 41884572 41884615 -106898857 + (CA)n Simple_repeat Simple_repeat 1 43 0 326 249 249 0 chr11 41884695 41884872 -106898600 + L1M4b LINE L1 3130 3350 -3607 869 208 72 65 chr11 41884910 41885203 -106898269 - MLT1D LTR MaLR 0 505 211 335 154 0 46 chr11 41887196 41887261 -106896211 + MER5B DNA MER1_type 9 70 -108 651 137 0 10 chr11 41887802 41887904 -106895568 - AluS SINE Alu -212 101 1 1905 150 12 18 chr11 41887909 41888248 -106895224 - L1MC1 LINE L1 0 6333 5997 3035 98 22 2 chr11 41889091 41889538 -106893934 + L1PA14 LINE L1 5706 6161 0 199 314 14 14 chr11 41889631 41889701 -106893771 + L2 LINE L2 3203 3272 0 416 331 77 17 chr11 41889748 41890035 -106893437 + L1ME4a LINE L1 5564 5867 -254 2080 122 0 3 chr11 41891728 41892022 -106891450 + AluSx SINE Alu 1 293 -19 1127 139 6 0 chr11 41892772 41892938 -106890534 - AluSx SINE Alu -25 285 119 955 138 0 0 chr11 41893553 41893683 -106889789 - AluSx SINE Alu -182 130 1 488 211 11 0 chr11 41893699 41893789 -106889683 - MLT1D LTR MaLR -414 91 1 393 227 167 51 chr11 41893816 41894032 -106889440 + L1M4b LINE L1 3458 3698 -3259 933 254 29 26 chr11 41894039 41894389 -106889083 - L1M4 LINE L1 -754 5392 5042 1509 170 64 36 chr11 41894404 41894660 -106888812 + MER44D DNA MER2_type 1 249 -2242 1953 156 19 26 chr11 41894660 41895038 -106888434 - THE1C LTR MaLR 0 375 1 1509 170 64 36 chr11 41895038 41895111 -106888361 + MER44D DNA MER2_type 249 609 0 1274 282 56 31 chr11 41895116 41895991 -106887481 - L1MDb LINE L1 -2140 4504 3608 668 285 64 31 chr11 41896024 41896413 -106887059 - L1MDb LINE L1 -3257 3387 2986 * 1001 273 104 52 chr11 41896410 41897481 -106885991 - L1MDb LINE L1 -3973 2671 1441 25 65 0 0 chr11 41897536 41897582 -106885890 + AT_rich Low_complexity Low_complexity 1 46 0 310 336 43 43 chr11 41897589 41897800 -106885672 - L1MDb LINE L1 -5421 1226 1016 344 40 20 0 chr11 41898204 41898254 -106885218 + (TG)n Simple_repeat Simple_repeat 2 52 0 310 301 16 47 chr11 41898305 41898498 -106884974 - L1MDb LINE L1 -6318 326 140 2990 156 6 6 chr11 41898547 41899042 -106884430 - LOR1a LTR ERV1 -2 495 1 675 81 0 0 chr11 41899044 41899131 -106884341 - LOR1a-int LTR ERV1 -3 8117 8031 * 20208 127 35 18 chr11 41899122 41902015 -106881457 - LOR1a-int LTR ERV1 -2048 6072 3109 1847 169 6 28 chr11 41902015 41902334 -106881138 - AluJo SINE Alu 0 312 1 20208 127 35 18 chr11 41902334 41902864 -106880608 - LOR1a-int LTR ERV1 -5011 3109 2590 2118 175 7 19 chr11 41902877 41903561 -106879911 - MER52A LTR ERV1 -374 1381 1 9479 143 21 23 chr11 41903561 41905200 -106878272 - LOR1a-int LTR ERV1 -6485 1635 1 2889 168 8 2 chr11 41905200 41905693 -106877779 - LOR1a LTR ERV1 0 497 2 22 35 0 0 chr11 41907534 41907563 -106875909 + AT_rich Low_complexity Low_complexity 1 29 0 53 69 0 0 chr11 41907779 41907881 -106875591 + AT_rich Low_complexity Low_complexity 1 102 0 190 299 93 10 chr11 41908164 41908261 -106875211 - L2 LINE L2 -1 3312 3208 9660 88 6 3 chr11 41908361 41909614 -106873858 - L1P LINE L1 -977 5169 3910 2583 14 0 0 chr11 41909614 41909910 -106873562 - L1PA2 LINE L1 0 6155 5860 9660 88 6 3 chr11 41909910 41910012 -106873460 - L1P LINE L1 -2236 3910 3810 229 171 0 0 chr11 41910340 41910381 -106873091 + 5S rRNA rRNA 2 42 -79 25 65 0 0 chr11 41910511 41910557 -106872915 + AT_rich Low_complexity Low_complexity 1 46 0 1938 146 27 3 chr11 41910784 41911079 -106872393 + AluSx SINE Alu 1 302 -10 336 256 44 11 chr11 41912831 41912921 -106870551 + MER5C DNA MER1_type 2 94 -230 426 203 40 0 chr11 41913099 41913247 -106870225 + GA-rich Low_complexity Low_complexity 1 154 0 218 341 32 8 chr11 41913720 41913843 -106869629 + L2 LINE L2 2453 2578 -736 13583 202 21 60 chr11 41914772 41917679 -106865793 + L1PA13 LINE L1 1 3019 -3795 1753 179 13 32 chr11 41917679 41918054 -106865418 - L1MB8 LINE L1 0 6178 5811 3102 63 2 0 chr11 41918054 41918440 -106865032 - L1PA7 LINE L1 -1 6153 5758 13583 202 21 60 chr11 41918440 41920699 -106862773 + L1PA13 LINE L1 3018 5363 -1451 2036 127 75 26 chr11 41920699 41921046 -106862426 - THE1B LTR MaLR 0 364 1 11333 105 2 0 chr11 41921046 41922623 -106860849 - THE1B-int LTR MaLR 0 1580 1 1884 156 79 15 chr11 41922625 41922965 -106860507 - THE1B LTR MaLR -2 362 1 13583 202 21 60 chr11 41922965 41924915 -106858557 + L1PA13 LINE L1 5363 6796 -18 1309 175 77 153 chr11 41925340 41925889 -106857583 + MER67D LTR ERV1 3 509 -5 1632 213 40 60 chr11 41926885 41926951 -106856521 - L1MB8 LINE L1 -869 5277 5211 459 0 0 0 chr11 41926951 41927002 -106856470 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2110 108 4 0 chr11 41927004 41927281 -106856191 - AluSc SINE Alu -29 280 3 1632 213 40 60 chr11 41927281 41927506 -106855966 - L1MB8 LINE L1 -936 5210 4996 1975 125 0 0 chr11 41927506 41927786 -106855686 - AluSg SINE Alu -30 280 1 1632 213 40 60 chr11 41927786 41928020 -106855452 - L1MB8 LINE L1 -1150 4996 4759 1363 188 6 72 chr11 41928036 41928381 -106855091 + L1MA10 LINE L1 6008 6329 -5 238 299 50 75 chr11 41928546 41928600 -106854872 + L1MC/D LINE L1 5533 5587 -2221 2459 53 7 3 chr11 41928600 41928900 -106854572 - AluY SINE Alu -10 301 1 238 299 50 75 chr11 41928900 41929086 -106854386 + L1MC/D LINE L1 5587 5767 -2041 487 351 120 20 chr11 41929372 41929921 -106853551 + L1M4 LINE L1 3352 3955 -2191 649 229 103 105 chr11 41929983 41930441 -106853031 - LTR37B LTR ERV1 -5 463 7 202 404 18 0 chr11 41930694 41930808 -106852664 + L2 LINE L2 3193 3308 -5 3296 130 12 17 chr11 41931455 41931677 -106851795 - L1M1 LINE L1 -507 5798 5576 7288 43 16 1 chr11 41931677 41932559 -106850913 + MER11D LTR ERVK 3 897 0 3296 130 12 17 chr11 41932559 41933085 -106850387 - L1M1 LINE L1 -729 5576 5054 1989 188 36 21 chr11 41933118 41933592 -106849880 + L1MA3 LINE L1 5824 6304 -1 523 80 0 0 chr11 41933741 41933816 -106849656 - Alu SINE Alu -1 311 237 426 182 27 9 chr11 41933991 41934101 -106849371 + CT-rich Low_complexity Low_complexity 4 115 0 1838 113 28 60 chr11 41934114 41934432 -106849040 - AluSq SINE Alu 0 313 6 763 250 52 24 chr11 41934856 41935068 -106848404 - MER20 DNA MER1_type -1 218 1 245 185 0 0 chr11 41935786 41935840 -106847632 + (TA)n Simple_repeat Simple_repeat 2 55 0 261 224 47 12 chr11 41936202 41936287 -106847185 - LTR37A LTR ERV1 -12 414 327 802 181 78 12 chr11 41936288 41936454 -106847018 + AluJb SINE Alu 136 312 0 245 262 139 32 chr11 41936502 41936560 -106846912 - LTR37A LTR ERV1 -114 312 262 3193 36 8 3 chr11 41936560 41936951 -106846521 + L1PA4 LINE L1 5763 6155 0 245 262 139 32 chr11 41936951 41937144 -106846328 - LTR37A LTR ERV1 -164 262 34 1618 86 14 9 chr11 41937289 41937509 -106845963 + AluSq SINE Alu 1 221 -92 209 139 23 0 chr11 41937509 41937552 -106845920 + A-rich Low_complexity Low_complexity 3 46 0 24 53 0 0 chr11 41937830 41937868 -106845604 + AT_rich Low_complexity Low_complexity 1 38 0 218 119 0 24 chr11 41938495 41938537 -106844935 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 570 247 73 17 chr11 41939496 41939674 -106843798 - MER69 DNA AcHobo -1002 224 37 21 0 0 0 chr11 41939862 41939883 -106843589 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 41940701 41940722 -106842750 + AT_rich Low_complexity Low_complexity 1 21 0 1095 121 81 0 chr11 41941156 41941329 -106842143 - AluSp SINE Alu -7 306 120 25 0 0 0 chr11 41941497 41941522 -106841950 + AT_rich Low_complexity Low_complexity 1 25 0 913 86 0 0 chr11 41941593 41941710 -106841762 - AluSp SINE Alu -196 117 1 2273 137 31 14 chr11 41943404 41943761 -106839711 + THE1B LTR MaLR 2 364 0 1361 220 3 25 chr11 41945555 41945841 -106837631 + AluJb SINE Alu 1 280 -32 197 306 27 63 chr11 41946365 41946476 -106836996 + MIR SINE MIR 74 180 -82 335 237 29 29 chr11 41947443 41947616 -106835856 + (TATATG)n Simple_repeat Simple_repeat 1 173 0 24 32 0 0 chr11 41947683 41947714 -106835758 + AT_rich Low_complexity Low_complexity 1 31 0 206 245 0 0 chr11 41947873 41947922 -106835550 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 262 214 153 20 chr11 41948401 41948499 -106834973 - L1ME4a LINE L1 -32 6089 5979 243 0 0 0 chr11 41949561 41949588 -106833884 + (CA)n Simple_repeat Simple_repeat 2 28 0 244 325 160 19 chr11 41950353 41950565 -106832907 - MLT1J LTR MaLR -44 467 226 180 111 0 0 chr11 41950698 41950725 -106832747 + (TGG)n Simple_repeat Simple_repeat 3 29 0 2275 95 3 29 chr11 41950752 41951067 -106832405 + AluSg SINE Alu 1 307 -3 274 271 34 25 chr11 41951817 41951935 -106831537 - MER103 DNA DNA -43 123 5 9481 158 24 39 chr11 41953563 41955406 -106828066 + Tigger1 DNA MER2_type 603 2418 0 2174 107 0 0 chr11 41955650 41955931 -106827541 - AluSq SINE Alu -32 281 1 215 59 0 29 chr11 41955983 41956017 -106827455 + (TATG)n Simple_repeat Simple_repeat 4 36 0 752 194 29 17 chr11 41956278 41956453 -106827019 + MER58A DNA MER1_type 42 218 -6 1145 314 63 57 chr11 41956696 41957327 -106826145 - MER115 DNA AcHobo -7 686 52 566 310 11 11 chr11 41957376 41957560 -106825912 + MER20 DNA MER1_type 32 215 -4 290 278 270 0 chr11 41957562 41957677 -106825795 + MER5A DNA MER1_type 44 189 0 18154 61 0 7 chr11 41957896 41960202 -106823270 + L1P LINE L1 2 2290 -3856 7420 33 2 0 chr11 41960203 41961388 -106822084 + L1PA3 LINE L1 4969 6162 0 25 0 0 0 chr11 41962286 41962311 -106821161 + AT_rich Low_complexity Low_complexity 1 25 0 732 181 14 0 chr11 41963152 41963290 -106820182 + FRAM SINE Alu 36 175 -1 22 56 0 0 chr11 41963482 41963518 -106819954 + AT_rich Low_complexity Low_complexity 1 36 0 207 0 0 0 chr11 41963929 41963952 -106819520 + (CAA)n Simple_repeat Simple_repeat 2 24 0 403 215 19 19 chr11 41964383 41964490 -106818982 + FLAM_A SINE Alu 22 128 -5 23 0 0 0 chr11 41964827 41964850 -106818622 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr11 41964865 41964894 -106818578 + AT_rich Low_complexity Low_complexity 1 29 0 1830 342 99 17 chr11 41965368 41966583 -106816889 + L2 LINE L2 1781 3120 -193 3008 208 22 27 chr11 41966583 41967296 -106816176 - MER67C LTR ERV1 0 710 1 1830 342 99 17 chr11 41967296 41967502 -106815970 + L2 LINE L2 3120 3308 -5 35 41 0 0 chr11 41967502 41967551 -106815921 + AT_rich Low_complexity Low_complexity 1 49 0 757 285 0 0 chr11 41967637 41967809 -106815663 - FRAM SINE Alu -4 172 1 10011 75 13 1 chr11 41967820 41969129 -106814343 - L1P LINE L1 -4820 1326 2 2918 162 71 58 chr11 41969137 41969425 -106814047 - L1MC1 LINE L1 -66 6267 5984 1741 145 68 41 chr11 41969425 41969790 -106813682 - THE1C LTR MaLR 0 375 1 2918 162 71 58 chr11 41969790 41970209 -106813263 - L1MC1 LINE L1 -349 5984 5551 11316 229 38 23 chr11 41971538 41976782 -106806690 + L1PA16 LINE L1 783 6205 -18 692 242 1 7 chr11 41976787 41976951 -106806521 - L1MC/D LINE L1 -763 5570 5404 2327 101 3 0 chr11 41977036 41977342 -106806130 + AluSc SINE Alu 3 309 0 1594 234 8 66 chr11 41978518 41979006 -106804466 + MLT1C LTR MaLR 6 465 -2 306 306 127 19 chr11 41979957 41980114 -106803358 - MIR SINE MIR -68 194 21 40 21 0 0 chr11 41980133 41980180 -106803292 + AT_rich Low_complexity Low_complexity 1 47 0 1381 91 15 0 chr11 41982262 41982459 -106801013 + L1PA12 LINE L1 5969 6168 0 25 31 0 0 chr11 41984350 41984382 -106799090 + AT_rich Low_complexity Low_complexity 1 32 0 315 378 43 10 chr11 41985432 41985641 -106797831 + MIR SINE MIR 41 256 -6 271 299 0 0 chr11 41985872 41985949 -106797523 + MLT1J1 LTR MaLR 1 77 -369 280 265 66 53 chr11 41985974 41986125 -106797347 + MLT1J2 LTR MaLR 137 289 -161 1597 241 41 66 chr11 41986157 41986688 -106796784 + MLT1F LTR MaLR 25 542 0 1008 222 13 44 chr11 41986838 41987063 -106796409 - MER20 DNA MER1_type -1 218 1 226 221 163 35 chr11 41987093 41987179 -106796293 + MIR3 SINE MIR 73 169 -39 392 311 98 0 chr11 41987802 41987934 -106795538 + MIR SINE MIR 2 146 -116 264 250 50 0 chr11 41988679 41988759 -106794713 + LTR16A1 LTR ERVL 372 455 -2 414 70 0 0 chr11 41989008 41989065 -106794407 - L1PA8 LINE L1 -5 6167 6111 180 0 0 0 chr11 41989217 41989237 -106794235 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 4451 195 75 29 chr11 41991226 41991591 -106791881 + L1MC3 LINE L1 6626 6973 -812 1830 138 67 28 chr11 41991591 41991952 -106791520 - THE1C LTR MaLR 0 375 1 4451 195 75 29 chr11 41991952 41992681 -106790791 + L1MC3 LINE L1 6973 7770 -15 22 35 0 0 chr11 41992686 41992715 -106790757 + AT_rich Low_complexity Low_complexity 1 29 0 2003 92 0 7 chr11 41993336 41993619 -106789853 + AluY SINE Alu 21 301 -10 1918 101 11 31 chr11 41993765 41994052 -106789420 + AluSq SINE Alu 1 281 -32 270 136 0 0 chr11 41994056 41994100 -106789372 + (TA)n Simple_repeat Simple_repeat 2 45 0 23 33 0 0 chr11 41994228 41994258 -106789214 + AT_rich Low_complexity Low_complexity 1 30 0 1090 188 0 0 chr11 41994272 41994458 -106789014 - L1PA16 LINE L1 -73 6093 5908 8259 203 31 45 chr11 41994461 41995568 -106787904 - L1PA16 LINE L1 -638 5528 4408 297 0 0 0 chr11 41995568 41995601 -106787871 + (TG)n Simple_repeat Simple_repeat 1 33 0 8259 203 31 45 chr11 41995601 41995801 -106787671 - L1PA16 LINE L1 -1758 4408 4207 2219 94 0 7 chr11 41995801 41996088 -106787384 - AluSg1 SINE Alu -24 285 1 8259 203 31 45 chr11 41996088 41997280 -106786192 - L1PA16 LINE L1 -1959 4207 3073 21 0 0 0 chr11 41997954 41997975 -106785497 + AT_rich Low_complexity Low_complexity 1 21 0 2240 98 0 0 chr11 41998659 41998954 -106784518 + AluSx SINE Alu 1 295 -17 353 257 28 9 chr11 41999700 41999809 -106783663 + MIR SINE MIR 106 216 -46 21 0 0 0 chr11 42000036 42000057 -106783415 + AT_rich Low_complexity Low_complexity 1 21 0 2057 151 119 8 chr11 42000299 42000684 -106782788 + MSTA LTR MaLR 1 428 0 21 36 0 0 chr11 42001300 42001328 -106782144 + AT_rich Low_complexity Low_complexity 1 28 0 260 306 117 17 chr11 42001436 42001616 -106781856 + MIR SINE MIR 6 203 -59 186 328 33 0 chr11 42002772 42002833 -106780639 + L2 LINE L2 2866 2928 -344 1991 121 14 0 chr11 42003354 42003643 -106779829 - AluSx SINE Alu -19 293 1 185 393 22 0 chr11 42004082 42004171 -106779301 + L2 LINE L2 2278 2368 -946 26 0 0 0 chr11 42004636 42004662 -106778810 + AT_rich Low_complexity Low_complexity 1 26 0 23 54 0 0 chr11 42004707 42004744 -106778728 + AT_rich Low_complexity Low_complexity 1 37 0 30 27 0 0 chr11 42004947 42004984 -106778488 + AT_rich Low_complexity Low_complexity 1 37 0 4405 229 64 36 chr11 42005019 42006884 -106776588 - L1 LINE L1 -2776 4789 2977 522 0 0 0 chr11 42006884 42006942 -106776530 + (TG)n Simple_repeat Simple_repeat 2 59 0 4405 229 64 36 chr11 42006942 42007021 -106776451 - L1 LINE L1 -4588 2977 2902 2247 71 3 3 chr11 42007021 42007348 -106776124 - AluY SINE Alu 0 327 1 4405 229 64 36 chr11 42007348 42008082 -106775390 - L1 LINE L1 -4663 2902 2028 13953 186 57 21 chr11 42008103 42012817 -106770655 - L1PB1 LINE L1 -1 6866 2325 216 0 0 0 chr11 42012817 42012841 -106770631 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 13953 186 57 21 chr11 42012841 42012959 -106770513 - L1PB1 LINE L1 -4542 2325 2213 2075 86 65 0 chr11 42012959 42013237 -106770235 - AluSq SINE Alu -17 296 1 13953 186 57 21 chr11 42013237 42014414 -106769058 - L1PB1 LINE L1 -4654 2213 634 941 195 26 0 chr11 42014415 42014605 -106768867 - L1PB1 LINE L1 -6666 197 3 322 310 32 58 chr11 42014617 42014772 -106768700 - L1 LINE L1 -5541 2024 1874 25 0 0 0 chr11 42015031 42015056 -106768416 + AT_rich Low_complexity Low_complexity 1 25 0 1067 207 29 58 chr11 42015496 42015771 -106767701 - AluJo SINE Alu -24 288 22 354 291 152 7 chr11 42015927 42016078 -106767394 + MIR SINE MIR 88 260 -2 217 241 93 0 chr11 42016129 42016183 -106767289 + L2 LINE L2 3214 3272 0 29 28 0 0 chr11 42017106 42017142 -106766330 + AT_rich Low_complexity Low_complexity 1 36 0 253 372 90 6 chr11 42017451 42017607 -106765865 - MIR SINE MIR -91 171 3 230 341 12 0 chr11 42017630 42017715 -106765757 + GA-rich Low_complexity Low_complexity 2 87 0 30 0 0 0 chr11 42018236 42018266 -106765206 + AT_rich Low_complexity Low_complexity 1 30 0 1000 212 156 23 chr11 42018319 42018621 -106764851 - MER7A DNA MER2_type -6 340 1 309 279 136 7 chr11 42018631 42018771 -106764701 + L1ME4a LINE L1 5799 5956 -165 1690 180 35 12 chr11 42019329 42019668 -106763804 - L1PB4 LINE L1 -12 6144 5798 231 138 31 15 chr11 42019686 42019751 -106763721 + (TA)n Simple_repeat Simple_repeat 1 66 0 225 148 19 19 chr11 42019826 42019880 -106763592 + LTR66 LTR ERVL 386 439 -171 206 194 15 0 chr11 42019989 42020056 -106763416 + (TA)n Simple_repeat Simple_repeat 1 68 0 307 326 0 0 chr11 42020096 42020185 -106763287 - L1MC4 LINE L1 -1340 6702 6614 225 297 0 11 chr11 42020201 42020292 -106763180 + L1MC4 LINE L1 6614 6703 -1339 268 265 8 8 chr11 42020297 42020429 -106763043 + (TA)n Simple_repeat Simple_repeat 1 132 0 850 161 70 1 chr11 42020789 42021003 -106762469 - L1M2 LINE L1 -367 5789 5318 282 298 11 0 chr11 42021113 42021207 -106762265 + (TA)n Simple_repeat Simple_repeat 1 95 0 1720 211 18 0 chr11 42021713 42022054 -106761418 + MER7A DNA MER2_type 2 346 0 32 0 0 0 chr11 42022493 42022525 -106760947 + AT_rich Low_complexity Low_complexity 1 32 0 288 289 74 16 chr11 42023439 42023560 -106759912 + MIR SINE MIR 64 191 -71 288 230 106 6 chr11 42023606 42023736 -106759736 + MIR SINE MIR 104 248 -14 231 362 78 0 chr11 42024286 42024402 -106759070 - MIR3 SINE MIR -6 202 78 198 0 0 0 chr11 42024712 42024734 -106758738 + (CA)n Simple_repeat Simple_repeat 1 22 0 1614 116 22 25 chr11 42024938 42025215 -106758257 + HSMAR2 DNA Mariner 3 278 -1024 267 79 0 0 chr11 42025220 42025258 -106758214 + L1MA3 LINE L1 6166 6203 -102 232 132 0 0 chr11 42025225 42025263 -106758209 + L1MA4A LINE L1 6170 6207 -96 * 326 71 12 224 chr11 42025319 42025404 -106758068 + HSMAR2 DNA Mariner 271 337 -965 * 2380 149 7 12 chr11 42025400 42025808 -106757664 + HSMAR2 DNA Mariner 896 1301 -1 26 0 0 0 chr11 42026553 42026579 -106756893 + AT_rich Low_complexity Low_complexity 1 26 0 540 292 73 18 chr11 42027269 42027488 -106755984 + MIR SINE MIR 2 232 -30 330 269 70 39 chr11 42027495 42027752 -106755720 - L1ME LINE L1 -630 5532 5268 242 169 12 36 chr11 42027954 42028037 -106755435 + (TA)n Simple_repeat Simple_repeat 1 81 0 431 258 109 50 chr11 42028125 42028528 -106754944 - L1ME LINE L1 -1303 4843 4417 27 49 0 0 chr11 42028671 42028712 -106754760 + AT_rich Low_complexity Low_complexity 1 41 0 200 152 43 0 chr11 42029255 42029301 -106754171 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 1387 158 32 7 chr11 42029573 42029852 -106753620 + L1MA7 LINE L1 6000 6285 -6 403 273 10 83 chr11 42030242 42030281 -106753191 - HAL1 LINE L1 -193 2314 2274 1539 191 112 16 chr11 42030281 42030657 -106752815 + MLT2D LTR ERVL 3 414 0 403 273 10 83 chr11 42030657 42030717 -106752755 - HAL1 LINE L1 -233 2274 2211 2012 95 8 0 chr11 42030717 42030981 -106752491 - AluSp SINE Alu -47 266 1 403 273 10 83 chr11 42030981 42031180 -106752292 - HAL1 LINE L1 -296 2211 2037 305 359 28 56 chr11 42031265 42031552 -106751920 - LTR67 LTR ERVL -272 285 7 21 36 0 0 chr11 42032366 42032394 -106751078 + AT_rich Low_complexity Low_complexity 1 28 0 238 286 0 0 chr11 42033357 42033427 -106750045 + (TAA)n Simple_repeat Simple_repeat 1 70 0 1354 231 0 26 chr11 42033817 42033979 -106749493 - AluJo SINE Alu -17 295 143 2240 86 13 7 chr11 42033979 42034281 -106749191 - AluSq SINE Alu -9 304 1 1354 231 0 26 chr11 42034281 42034421 -106749051 - AluJo SINE Alu -169 143 1 23 0 0 0 chr11 42034769 42034792 -106748680 + AT_rich Low_complexity Low_complexity 1 23 0 635 342 136 10 chr11 42035614 42036183 -106747289 + L2 LINE L2 2662 3307 -6 1610 233 101 58 chr11 42036707 42037411 -106746061 + MER50 LTR ERV1 1 734 0 614 274 162 5 chr11 42037531 42037735 -106745737 - MIR SINE MIR -21 241 6 715 78 17 0 chr11 42038472 42038588 -106744884 + (TC)n Simple_repeat Simple_repeat 1 118 0 2275 144 23 0 chr11 42038829 42039183 -106744289 + THE1B LTR MaLR 3 364 0 207 306 83 0 chr11 42039798 42039870 -106743602 + L2 LINE L2 3173 3250 -22 221 363 59 10 chr11 42040191 42040293 -106743179 - L3b LINE CR1 -5 1578 1472 316 283 67 33 chr11 42040589 42040709 -106742763 - MLT1G1 LTR MaLR -44 551 428 2005 128 7 0 chr11 42040819 42041139 -106742333 - AluSx SINE Alu 0 322 1 247 268 24 12 chr11 42042554 42042636 -106740836 - MLT1H-int LTR MaLR -1284 87 5 411 291 84 103 chr11 42042640 42043115 -106740357 - MLT1H LTR MaLR 0 549 84 26 50 0 0 chr11 42043282 42043322 -106740150 + AT_rich Low_complexity Low_complexity 1 40 0 3056 101 12 2 chr11 42044639 42045063 -106738409 + MSTA LTR MaLR 1 428 0 293 353 45 0 chr11 42045865 42045998 -106737474 - MIR SINE MIR -56 206 68 439 222 7 111 chr11 42046410 42046554 -106736918 + L1MDa LINE L1 17 145 -6395 189 147 0 0 chr11 42046554 42046588 -106736884 + (GGA)n Simple_repeat Simple_repeat 3 36 0 366 271 14 32 chr11 42046648 42046876 -106736596 + CT-rich Low_complexity Low_complexity 1 224 0 243 0 0 0 chr11 42047360 42047387 -106736085 + (A)n Simple_repeat Simple_repeat 1 27 0 1962 129 3 32 chr11 42047399 42047709 -106735763 + AluSq SINE Alu 1 301 -12 263 227 45 0 chr11 42047710 42047798 -106735674 - L1MC4 LINE L1 -1339 6703 6612 453 94 35 0 chr11 42047798 42047883 -106735589 + (TA)n Simple_repeat Simple_repeat 1 88 0 21 36 0 0 chr11 42047984 42048012 -106735460 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr11 42048034 42048059 -106735413 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr11 42048412 42048437 -106735035 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr11 42048529 42048558 -106734914 + AT_rich Low_complexity Low_complexity 1 29 0 1552 0 0 0 chr11 42048697 42048864 -106734608 + AluYa5 SINE Alu 144 310 -1 1678 163 38 0 chr11 42048901 42049189 -106734283 - AluSx SINE Alu -13 299 1 247 200 20 0 chr11 42049199 42049249 -106734223 - L1MC/D LINE L1 -753 5591 5541 33 0 0 0 chr11 42049459 42049492 -106733980 + AT_rich Low_complexity Low_complexity 1 33 0 38 68 0 0 chr11 42049791 42049864 -106733608 + AT_rich Low_complexity Low_complexity 1 73 0 1804 157 7 0 chr11 42050100 42050380 -106733092 - AluJb SINE Alu -30 282 1 2082 92 3 11 chr11 42051117 42051401 -106732071 + AluSx SINE Alu 1 282 -30 1463 54 8 46 chr11 42051698 42051939 -106731533 + HERVK9 LTR ERVK 2555 2786 -3130 7226 73 8 11 chr11 42051939 42052891 -106730581 + HERVK9 LTR ERVK 3711 4660 -1256 507 164 53 26 chr11 42052921 42053073 -106730399 - L1PA5 LINE L1 -18 6136 5981 709 200 27 26 chr11 42053178 42053361 -106730111 - L1PB4 LINE L1 -190 5966 5783 228 131 33 16 chr11 42053364 42053425 -106730047 + (TA)n Simple_repeat Simple_repeat 1 62 0 294 164 0 0 chr11 42053509 42053564 -106729908 + (TA)n Simple_repeat Simple_repeat 1 55 0 182 179 18 0 chr11 42053663 42053719 -106729753 + (TA)n Simple_repeat Simple_repeat 1 57 0 315 287 37 0 chr11 42053742 42053850 -106729622 + (TATATG)n Simple_repeat Simple_repeat 1 112 0 261 341 96 7 chr11 42054497 42054632 -106728840 + L2 LINE L2 2058 2204 -1110 2092 137 3 0 chr11 42054632 42054931 -106728541 - AluSx SINE Alu -12 300 1 1603 164 19 61 chr11 42054945 42055123 -106728349 - AluJb SINE Alu -14 298 137 2220 104 3 0 chr11 42055123 42055421 -106728051 - AluSp SINE Alu -12 301 3 1603 164 19 61 chr11 42055421 42055553 -106727919 - AluJb SINE Alu -175 137 1 474 170 22 74 chr11 42055848 42055983 -106727489 + AluSp SINE Alu 1 128 -185 312 278 17 39 chr11 42056761 42056941 -106726531 + GA-rich Low_complexity Low_complexity 3 178 0 456 139 0 30 chr11 42057149 42057250 -106726222 + (GGA)n Simple_repeat Simple_repeat 1 98 0 1322 232 34 22 chr11 42057250 42057573 -106725899 + L1MDa LINE L1 116 442 -6098 776 234 33 120 chr11 42057573 42058082 -106725390 + MER4C LTR ERV1 1 465 0 974 293 173 49 chr11 42058087 42058318 -106725154 + L1MDa LINE L1 444 645 -5895 1976 127 0 35 chr11 42058318 42058634 -106724838 + AluSx SINE Alu 1 305 -7 974 293 173 49 chr11 42058634 42058893 -106724579 + L1MDa LINE L1 645 995 -5545 1116 208 56 28 chr11 42058948 42059232 -106724240 + MER67C LTR ERV1 108 399 -311 952 211 30 42 chr11 42059414 42059535 -106723937 + L1MDa LINE L1 1056 1177 -5363 3582 134 4 2 chr11 42059535 42060088 -106723384 - MER41A LTR ERV1 0 554 1 952 211 30 42 chr11 42060088 42060297 -106723175 + L1MDa LINE L1 1177 1382 -5158 991 227 78 13 chr11 42060711 42061098 -106722374 - MER113 DNA MER1_type? -75 446 35 1554 171 7 4 chr11 42062258 42062539 -106720933 + L1PA16 LINE L1 5885 6166 0 15398 100 8 0 chr11 42064062 42067094 -106716378 + L1PA7 LINE L1 3086 6147 -7 21 57 0 0 chr11 42067095 42067130 -106716342 + AT_rich Low_complexity Low_complexity 1 35 0 1122 199 74 12 chr11 42067558 42067814 -106715658 - MLT1A1 LTR MaLR 0 365 94 9266 161 18 11 chr11 42067815 42069421 -106714051 + Tigger1 DNA MER2_type 2 1619 -799 2155 180 19 15 chr11 42069421 42069832 -106713640 + Tigger1 DNA MER2_type 2006 2418 0 454 200 11 11 chr11 42069838 42069928 -106713544 - MLT1A1 LTR MaLR -284 90 1 33 43 0 0 chr11 42070331 42070378 -106713094 + AT_rich Low_complexity Low_complexity 1 47 0 458 143 0 0 chr11 42070435 42070526 -106712946 - L1MA4A LINE L1 -7 6296 6206 298 295 69 45 chr11 42071307 42071843 -106711629 - L1M4 LINE L1 -777 5369 4821 517 314 75 34 chr11 42072043 42072457 -106711015 - L1ME3A LINE L1 -75 6095 5665 24 67 0 0 chr11 42072575 42072620 -106710852 + AT_rich Low_complexity Low_complexity 1 45 0 28 95 0 0 chr11 42072705 42072789 -106710683 + AT_rich Low_complexity Low_complexity 1 84 0 8209 100 8 4 chr11 42072789 42073450 -106710022 - L1PA7 LINE L1 -13 6456 5799 2141 128 0 3 chr11 42073450 42073756 -106709716 - AluY SINE Alu -6 305 1 8209 100 8 4 chr11 42073756 42075083 -106708389 - L1PA7 LINE L1 -670 5799 4476 18665 114 19 19 chr11 42075084 42079094 -106704378 - L1PA7 LINE L1 -2409 4052 8 328 309 149 6 chr11 42079089 42079451 -106704021 - L1ME LINE L1 -4735 1526 1113 * 1310 231 24 10 chr11 42079522 42079820 -106703652 - AluJo SINE Alu 0 302 1 24 0 0 0 chr11 42080096 42080120 -106703352 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr11 42080330 42080354 -106703118 + AT_rich Low_complexity Low_complexity 1 24 0 30 59 0 0 chr11 42080393 42080444 -106703028 + AT_rich Low_complexity Low_complexity 1 51 0 1935 142 57 132 chr11 42080488 42081077 -106702395 - MLT2A2 LTR ERVL 0 554 1 799 245 31 43 chr11 42081739 42082190 -106701282 - L1ME LINE L1 -5034 1049 718 501 174 0 0 chr11 42082223 42082321 -106701151 + CT-rich Low_complexity Low_complexity 2 99 0 1592 169 137 13 chr11 42082386 42082791 -106700681 - L1MB8 LINE L1 -2 6176 5720 1910 73 0 25 chr11 42083274 42083548 -106699924 + AluY SINE Alu 35 301 -10 215 140 20 0 chr11 42083548 42083598 -106699874 + (TA)n Simple_repeat Simple_repeat 2 52 0 2066 100 48 0 chr11 42084918 42085207 -106698265 - AluSx SINE Alu -9 303 1 23 33 0 0 chr11 42085601 42085631 -106697841 + AT_rich Low_complexity Low_complexity 1 30 0 222 118 0 0 chr11 42086248 42086282 -106697190 + (A)n Simple_repeat Simple_repeat 1 34 0 22 35 0 0 chr11 42087223 42087252 -106696220 + AT_rich Low_complexity Low_complexity 1 29 0 2256 108 0 6 chr11 42087436 42087750 -106695722 + AluSx SINE Alu 1 312 0 9131 220 27 9 chr11 42088062 42091237 -106692235 - L1PA16 LINE L1 0 6166 2936 1957 118 0 65 chr11 42092000 42092322 -106691150 + AluSx SINE Alu 1 301 -11 38 39 0 0 chr11 42092399 42092451 -106691021 + AT_rich Low_complexity Low_complexity 1 52 0 1036 62 0 8 chr11 42093336 42093465 -106690007 - AluSq/x SINE Alu -185 128 1 21 0 0 0 chr11 42093738 42093759 -106689713 + AT_rich Low_complexity Low_complexity 1 21 0 1691 176 3 10 chr11 42094717 42095007 -106688465 - AluJb SINE Alu -24 288 1 22 0 0 0 chr11 42096178 42096200 -106687272 + AT_rich Low_complexity Low_complexity 1 22 0 2155 131 7 3 chr11 42097309 42097615 -106685857 - AluJb SINE Alu -5 307 1 1315 156 31 9 chr11 42097620 42097845 -106685627 - AluJo SINE Alu -24 288 59 286 229 60 24 chr11 42099074 42099157 -106684315 + L1MC5 LINE L1 7832 7917 -44 1868 105 0 87 chr11 42099159 42099306 -106684166 + AluSx SINE Alu 1 106 -206 2222 60 0 11 chr11 42099306 42099620 -106683852 + AluY SINE Alu 2 312 0 1868 105 0 87 chr11 42099620 42099805 -106683667 + AluSx SINE Alu 106 305 -7 1656 174 0 18 chr11 42100389 42100671 -106682801 + AluJo SINE Alu 12 288 -24 1250 186 68 24 chr11 42100833 42101081 -106682391 + AluJo SINE Alu 1 259 -53 1399 223 48 66 chr11 42101192 42101676 -106681796 + HAL1 LINE L1 1592 2066 -441 1159 176 50 9 chr11 42101858 42102079 -106681393 - MLT1D LTR MaLR -6 499 270 950 179 35 25 chr11 42102107 42102308 -106681164 - MLT1D LTR MaLR -302 203 1 1580 177 46 7 chr11 42102473 42102756 -106680716 + AluSx SINE Alu 1 294 -18 300 143 0 0 chr11 42103202 42103251 -106680221 - FLAM_A SINE Alu 0 133 85 1104 148 0 0 chr11 42103730 42103899 -106679573 + L1PA8 LINE L1 5993 6161 -11 6438 206 31 6 chr11 42103917 42106155 -106677317 + L1PA15 LINE L1 3888 6165 0 935 225 58 60 chr11 42106155 42106590 -106676882 - Looper DNA T2_type -1124 434 1 21 71 0 0 chr11 42107141 42107183 -106676289 + AT_rich Low_complexity Low_complexity 1 42 0 458 19 0 0 chr11 42107911 42107963 -106675509 + (TA)n Simple_repeat Simple_repeat 1 52 0 252 0 0 0 chr11 42107964 42107992 -106675480 + (T)n Simple_repeat Simple_repeat 1 28 0 224 359 51 17 chr11 42108621 42108738 -106674734 - MER5A DNA MER1_type 0 189 69 293 205 2 0 chr11 42108908 42108986 -106674486 + L1MA4A LINE L1 6219 6297 -5 2425 52 0 0 chr11 42109188 42109478 -106673994 - AluY SINE Alu -21 290 1 267 306 70 45 chr11 42109631 42109788 -106673684 + MIR SINE MIR 52 212 -50 233 293 0 13 chr11 42110751 42110826 -106672646 - L1MC5 LINE L1 -1178 6783 6710 273 174 28 76 chr11 42111551 42111695 -106671777 + (TTATA)n Simple_repeat Simple_repeat 5 141 0 211 337 22 11 chr11 42111711 42111803 -106671669 - MIR SINE MIR -140 122 30 2200 65 0 46 chr11 42112001 42112308 -106671164 - AluY SINE Alu -18 293 1 2155 124 0 0 chr11 42112618 42112925 -106670547 + AluSx SINE Alu 6 312 0 180 0 0 0 chr11 42113745 42113765 -106669707 + (TTA)n Simple_repeat Simple_repeat 3 22 0 16643 29 2 0 chr11 42113765 42116508 -106666964 - L1PA3 LINE L1 -18 6137 3391 4086 103 5 0 chr11 42116940 42117530 -106665942 - L1MA2 LINE L1 -9 6295 5703 881 210 0 6 chr11 42117531 42117707 -106665765 + L1P LINE L1 3707 3881 -2265 * 2102 60 4 0 chr11 42117706 42117974 -106665498 + L1PA8 LINE L1 5667 5935 -237 203 248 105 67 chr11 42118938 42119043 -106664429 - MIR3 SINE MIR -41 167 86 24 0 0 0 chr11 42119164 42119188 -106664284 + AT_rich Low_complexity Low_complexity 1 24 0 323 255 68 51 chr11 42120443 42120638 -106662834 + MLT1J LTR MaLR 28 262 -249 22 35 0 0 chr11 42120841 42120870 -106662602 + AT_rich Low_complexity Low_complexity 1 29 0 423 347 65 0 chr11 42120964 42121180 -106662292 - MIR SINE MIR -13 249 20 223 358 32 11 chr11 42121129 42121224 -106662248 + MIR SINE MIR 20 116 -146 * 213 326 184 23 chr11 42121346 42121607 -106661865 + L3 LINE CR1 1274 1576 -1 22 35 0 0 chr11 42121791 42121820 -106661652 + AT_rich Low_complexity Low_complexity 1 29 0 1020 225 0 14 chr11 42121874 42122087 -106661385 + MER6B DNA MER2_type 1 210 0 258 105 0 0 chr11 42123349 42123387 -106660085 + (TA)n Simple_repeat Simple_repeat 2 39 0 24 53 0 0 chr11 42123657 42123695 -106659777 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr11 42123969 42123991 -106659481 + AT_rich Low_complexity Low_complexity 1 22 0 3122 119 13 33 chr11 42124970 42125044 -106658428 - MER75 DNA T2_type -3 511 437 1866 137 4 0 chr11 42125044 42125315 -106658157 + AluSx SINE Alu 1 272 -40 201 39 0 0 chr11 42125315 42125341 -106658131 + (CA)n Simple_repeat Simple_repeat 2 27 0 3122 119 13 33 chr11 42125341 42125786 -106657686 - MER75 DNA T2_type -75 439 1 517 284 152 65 chr11 42126223 42126652 -106656820 + MLT1C LTR MaLR 1 466 -1 1460 171 4 0 chr11 42127208 42127466 -106656006 + L1MA7 LINE L1 5320 5578 -713 1024 168 15 0 chr11 42127466 42127659 -106655813 + L1MA7 LINE L1 6070 6275 -16 190 397 13 0 chr11 42127903 42127981 -106655491 + L2 LINE L2 1481 1559 -1755 21 0 0 0 chr11 42128154 42128175 -106655297 + AT_rich Low_complexity Low_complexity 1 21 0 218 256 75 75 chr11 42129770 42129903 -106653569 - MIR SINE MIR 0 262 130 1979 143 3 3 chr11 42131340 42131647 -106651825 - AluSg SINE Alu -3 307 1 396 0 0 0 chr11 42131673 42131717 -106651755 + (CA)n Simple_repeat Simple_repeat 1 44 0 321 345 39 20 chr11 42131752 42131955 -106651517 - L1MC4a LINE L1 -1894 5914 5708 31 58 0 0 chr11 42132298 42132350 -106651122 + AT_rich Low_complexity Low_complexity 1 52 0 1373 198 35 79 chr11 42132617 42132935 -106650537 + AluJb SINE Alu 3 306 -6 387 0 0 0 chr11 42133349 42133392 -106650080 + (CA)n Simple_repeat Simple_repeat 2 44 0 2281 69 3 7 chr11 42135111 42135414 -106648058 + AluY SINE Alu 1 302 -9 24 0 0 0 chr11 42136111 42136135 -106647337 + AT_rich Low_complexity Low_complexity 1 24 0 255 276 164 8 chr11 42136221 42136355 -106647117 - MIR SINE MIR -30 232 78 846 185 117 27 chr11 42136936 42137158 -106646314 - MER45B DNA AcHobo -86 954 713 828 265 91 81 chr11 42137364 42138030 -106645442 - MER45 DNA AcHobo -279 674 1 24 0 0 0 chr11 42139409 42139433 -106644039 + AT_rich Low_complexity Low_complexity 1 24 0 845 228 0 0 chr11 42140535 42140702 -106642770 - AluJb SINE Alu -11 301 135 306 228 150 16 chr11 42141501 42141628 -106641844 - Charlie8 DNA MER1_type -2201 216 73 334 286 41 41 chr11 42141726 42141967 -106641505 - L1ME3 LINE L1 -77 6085 5745 323 287 115 57 chr11 42142059 42142303 -106641169 + L1MC/D LINE L1 4697 4954 -1192 210 89 36 54 chr11 42142458 42142514 -106640958 + (TATAA)n Simple_repeat Simple_repeat 5 59 0 227 335 84 49 chr11 42142575 42142778 -106640694 + L1MC/D LINE L1 5510 5719 -2089 1672 187 53 9 chr11 42142795 42143132 -106640340 - MLT1A1 LTR MaLR -2 363 12 237 308 0 0 chr11 42143141 42143206 -106640266 + L1MC/D LINE L1 5739 5803 -2005 506 292 86 18 chr11 42143688 42143999 -106639473 + L1ME LINE L1 5254 5586 -584 208 221 26 0 chr11 42144185 42144262 -106639210 + (TA)n Simple_repeat Simple_repeat 1 79 0 237 171 23 80 chr11 42144534 42144622 -106638850 + L1M2c LINE L1 1853 1933 -4786 5211 234 62 51 chr11 42145142 42145337 -106638135 + L1M2 LINE L1 9 200 -6011 5267 87 17 11 chr11 42145337 42146098 -106637374 - MER4E LTR ERV1 0 766 1 5211 234 62 51 chr11 42146098 42147923 -106635549 + L1M2 LINE L1 200 2039 -4172 492 97 0 0 chr11 42147964 42148036 -106635436 + Alu SINE Alu 220 291 -18 3549 210 47 38 chr11 42148163 42149696 -106633776 + L1M2 LINE L1 4304 5849 -527 2994 299 32 12 chr11 42149699 42150758 -106632714 + L1M2a LINE L1 11 948 -6220 * 3275 237 67 86 chr11 42150755 42151006 -106632466 + L1M2a LINE L1 2017 2271 -4896 771 186 0 0 chr11 42151006 42151130 -106632342 - FLAM_C SINE Alu -19 124 1 3275 237 67 86 chr11 42151130 42152884 -106630588 + L1M2a LINE L1 2271 4105 -3062 491 307 80 33 chr11 42152956 42153405 -106630067 - L1M1 LINE L1 -4114 3451 2982 4814 250 77 49 chr11 42153417 42155100 -106628372 - L1M1 LINE L1 -5118 2448 720 443 323 12 6 chr11 42155205 42155372 -106628100 + L1MEc LINE L1 111 278 -6118 454 296 63 39 chr11 42155741 42155947 -106627525 - MIR SINE MIR -3 259 49 186 256 67 22 chr11 42156547 42156637 -106626835 - L2 LINE L2 -1585 1729 1636 234 81 0 0 chr11 42156950 42156987 -106626485 + (TTCC)n Simple_repeat Simple_repeat 4 40 0 1373 173 59 0 chr11 42156990 42157245 -106626227 - AluJb SINE Alu -5 307 38 1328 303 76 46 chr11 42157625 42158669 -106624803 + L2 LINE L2 2197 3311 -2 260 269 19 119 chr11 42158951 42159111 -106624361 + MLT1H LTR MaLR 406 549 0 34 89 0 0 chr11 42159507 42159597 -106623875 + AT_rich Low_complexity Low_complexity 1 90 0 2295 62 3 0 chr11 42160553 42160842 -106622630 + AluY SINE Alu 3 292 -19 185 323 75 11 chr11 42161458 42161551 -106621921 - L2 LINE L2 -67 3205 3107 218 331 69 15 chr11 42161716 42161846 -106621626 + MIR SINE MIR 94 230 -32 1792 107 0 11 chr11 42161846 42162116 -106621356 - AluSx SINE Alu -8 304 38 205 362 0 0 chr11 42163509 42163578 -106619894 + MIR SINE MIR 72 140 -122 1406 204 16 25 chr11 42163586 42163847 -106619625 + L1M4 LINE L1 5321 5580 -598 2139 102 0 16 chr11 42163847 42164152 -106619320 - AluSg SINE Alu -10 300 1 1406 204 16 25 chr11 42164152 42164204 -106619268 + L1M4 LINE L1 5580 5631 -547 26 0 0 0 chr11 42164417 42164443 -106619029 + AT_rich Low_complexity Low_complexity 1 26 0 1298 183 41 16 chr11 42164782 42165074 -106618398 - MER61B LTR ERV1 -28 396 5 617 206 127 42 chr11 42165234 42165423 -106618049 - MER3 DNA MER1_type 0 209 5 387 264 123 26 chr11 42165854 42166009 -106617463 - MIR SINE MIR -36 226 57 1735 172 0 43 chr11 42166611 42166937 -106616535 - AluSx SINE Alu 0 312 1 22 0 0 0 chr11 42167046 42167068 -106616404 + AT_rich Low_complexity Low_complexity 1 22 0 7758 19 0 0 chr11 42167431 42168533 -106614939 - L1PA2 LINE L1 -2 6153 5052 10332 25 1 0 chr11 42168533 42169754 -106613718 + L1PA2 LINE L1 3819 5040 -1106 184 306 82 12 chr11 42169872 42169957 -106613515 + MIR SINE MIR 121 211 -51 705 284 100 0 chr11 42170583 42170844 -106612628 + MLT1H LTR MaLR 12 298 -251 248 251 156 45 chr11 42170879 42171055 -106612417 + MLT1H LTR MaLR 332 527 -28 630 295 154 4 chr11 42171055 42171289 -106612183 - MLT1H LTR MaLR 0 549 281 326 309 38 60 chr11 42171359 42171912 -106611560 + L1MEc LINE L1 1213 1753 -4643 233 317 30 18 chr11 42172246 42172410 -106611062 + L1MEc LINE L1 2135 2300 -4096 2158 75 24 17 chr11 42172455 42172749 -106610723 + AluY SINE Alu 1 296 -15 377 294 24 29 chr11 42172832 42173002 -106610470 + L1MEc LINE L1 2368 2536 -3679 1981 140 32 57 chr11 42173631 42174003 -106609469 - THE1B LTR MaLR -1 363 1 11484 97 1 27 chr11 42174008 42175624 -106607848 - THE1B-int LTR MaLR -6 1574 1 2041 157 33 30 chr11 42175624 42175987 -106607485 - THE1B LTR MaLR 0 364 1 667 158 9 9 chr11 42176131 42176245 -106607227 + MLT1D LTR MaLR 1 114 -391 4189 109 15 0 chr11 42176245 42176861 -106606611 - L1PB1 LINE L1 -1 6150 5526 207 176 0 0 chr11 42176971 42177005 -106606467 + (CA)n Simple_repeat Simple_repeat 1 34 0 639 373 88 18 chr11 42178067 42178368 -106605104 + L2 LINE L2 2367 2645 -669 2111 73 38 14 chr11 42178368 42178656 -106604816 - AluY SINE Alu -16 295 1 639 373 88 18 chr11 42178656 42178925 -106604547 + L2 LINE L2 2645 2977 -337 243 337 169 0 chr11 42179864 42180030 -106603442 - L2 LINE L2 -246 3067 2874 2122 107 17 0 chr11 42180055 42180346 -106603126 - AluSp SINE Alu -17 296 1 1959 99 0 18 chr11 42180444 42180728 -106602744 - AluSc SINE Alu -4 305 27 474 208 0 0 chr11 42180828 42180929 -106602543 - L1MA9 LINE L1 -38 6274 6174 23 33 0 0 chr11 42181140 42181170 -106602302 + AT_rich Low_complexity Low_complexity 1 30 0 234 0 0 0 chr11 42181173 42181199 -106602273 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 340 64 0 0 chr11 42181205 42181252 -106602220 - L1PA3 LINE L1 -3 6152 6106 1716 169 10 3 chr11 42182191 42182487 -106600985 + AluSx SINE Alu 5 302 -10 32 75 0 0 chr11 42182599 42182666 -106600806 + AT_rich Low_complexity Low_complexity 1 67 0 210 213 21 0 chr11 42183417 42183464 -106600008 + A-rich Low_complexity Low_complexity 1 48 0 29 47 0 0 chr11 42183524 42183567 -106599905 + AT_rich Low_complexity Low_complexity 1 43 0 314 220 104 55 chr11 42183956 42184120 -106599352 + L1MC4a LINE L1 7347 7540 -268 394 271 36 70 chr11 42184395 42184676 -106598796 + L1MC4 LINE L1 7672 7933 -28 40 49 0 0 chr11 42185359 42185420 -106598052 + AT_rich Low_complexity Low_complexity 1 61 0 230 379 126 11 chr11 42186253 42186443 -106597029 + L3 LINE CR1 1088 1299 -278 29 47 0 0 chr11 42188051 42188094 -106595378 + AT_rich Low_complexity Low_complexity 1 43 0 1031 266 183 52 chr11 42188131 42188700 -106594772 + MLT1E2 LTR MaLR 1 565 -61 272 322 197 7 chr11 42189074 42189226 -106594246 - L2 LINE L2 -177 3136 2956 23 33 0 0 chr11 42189307 42189337 -106594135 + AT_rich Low_complexity Low_complexity 1 30 0 2780 13 0 6 chr11 42190195 42190512 -106592960 - AluYb8 SINE Alu -3 315 1 3191 150 16 69 chr11 42190520 42191185 -106592287 + L1PA16 LINE L1 5527 6156 -10 647 280 26 33 chr11 42191203 42191474 -106591998 + L1ME3A LINE L1 5894 6162 -8 906 144 11 8 chr11 42192057 42192323 -106591149 + CT-rich Low_complexity Low_complexity 1 267 0 2110 124 7 3 chr11 42192343 42192650 -106590822 - AluSx SINE Alu -4 308 1 192 200 0 0 chr11 42194810 42194860 -106588612 + (TA)n Simple_repeat Simple_repeat 1 50 0 419 306 94 55 chr11 42194964 42195239 -106588233 + MER102a DNA MER1_type 45 330 0 716 213 22 70 chr11 42195335 42195565 -106587907 + MER20 DNA MER1_type 1 219 0 23 78 0 0 chr11 42196782 42196833 -106586639 + AT_rich Low_complexity Low_complexity 1 51 0 2717 265 76 26 chr11 42196842 42197889 -106585583 + L1MC4 LINE L1 6459 7570 -472 2008 120 11 0 chr11 42197889 42198202 -106585270 + AluSp SINE Alu 1 316 0 2717 265 76 26 chr11 42198202 42198290 -106585182 + L1MC4 LINE L1 7570 7652 -390 22 88 0 0 chr11 42198356 42198413 -106585059 + AT_rich Low_complexity Low_complexity 1 57 0 264 196 39 0 chr11 42198814 42198865 -106584607 - LTR52 LTR ERVL -19 402 350 2558 256 87 9 chr11 42198867 42199536 -106583936 - HERVL74 LTR ERVL -2858 2827 2107 581 186 0 0 chr11 42199723 42199825 -106583647 - HERVL74 LTR ERVL -3587 2098 1997 15450 34 7 0 chr11 42199825 42202445 -106581027 + L1PA3 LINE L1 3523 6148 -7 568 268 200 17 chr11 42202925 42203160 -106580312 - HERVL74 LTR ERVL -3688 1997 1720 286 177 32 16 chr11 42203145 42203207 -106580265 + HERVL74 LTR ERVL 1216 1278 -4407 * 767 250 20 10 chr11 42203344 42203548 -106579924 - LTR52 LTR ERVL -41 380 175 618 270 32 1 chr11 42203980 42204156 -106579316 - MLT1-int LTR MaLR -773 598 403 21 0 0 0 chr11 42204279 42204300 -106579172 + AT_rich Low_complexity Low_complexity 1 21 0 275 374 31 31 chr11 42205914 42206077 -106577395 - MIR3 SINE MIR -23 185 23 340 313 17 0 chr11 42206337 42206452 -106577020 + MER5C DNA MER1_type 1 117 -207 27 0 0 0 chr11 42206612 42206639 -106576833 + AT_rich Low_complexity Low_complexity 1 27 0 1563 202 7 14 chr11 42208399 42208681 -106574791 + AluJo SINE Alu 1 280 -32 2579 149 45 8 chr11 42208702 42209172 -106574300 + L1MA4 LINE L1 5679 6165 -135 385 204 0 20 chr11 42209172 42209270 -106574202 + L1MA3 LINE L1 6209 6304 -1 1654 210 44 44 chr11 42210874 42211307 -106572165 + Tigger2a DNA MER2_type 1 433 -1 360 0 0 0 chr11 42211393 42211433 -106572039 + (CA)n Simple_repeat Simple_repeat 1 40 0 1291 246 120 54 chr11 42212416 42213176 -106570296 - L1M4 LINE L1 -2081 4065 3256 34 65 0 0 chr11 42215040 42215102 -106568370 + AT_rich Low_complexity Low_complexity 1 62 0 431 295 30 93 chr11 42215592 42215860 -106567612 - L2 LINE L2 -453 2861 2611 1233 147 13 38 chr11 42216227 42216465 -106567007 - AluY SINE Alu -79 232 1 1446 221 39 6 chr11 42216465 42216777 -106566695 + MLT1A1 LTR MaLR 44 365 0 934 222 7 7 chr11 42217448 42217723 -106565749 - AluSx SINE Alu 0 312 38 226 329 15 0 chr11 42217867 42217952 -106565520 - MIR SINE MIR -81 127 64 372 315 68 59 chr11 42219338 42219659 -106563813 + L2 LINE L2 2990 3313 0 2182 94 0 7 chr11 42219819 42220118 -106563354 - AluSx SINE Alu -15 297 1 472 349 35 15 chr11 42220188 42220386 -106563086 + MIR SINE MIR 17 218 -44 29 47 0 0 chr11 42220413 42220456 -106563016 + AT_rich Low_complexity Low_complexity 1 43 0 982 88 14 0 chr11 42220639 42220787 -106562685 - L1PA2 LINE L1 -1 6154 6005 416 252 68 58 chr11 42221498 42221704 -106561768 + L2 LINE L2 3106 3313 0 2146 95 0 7 chr11 42221868 42222163 -106561309 - AluSx SINE Alu -19 293 1 549 328 35 15 chr11 42222233 42222431 -106561041 + MIR SINE MIR 17 218 -44 29 47 0 0 chr11 42222458 42222501 -106560971 + AT_rich Low_complexity Low_complexity 1 43 0 3531 19 0 0 chr11 42222684 42223095 -106560377 - L1PA2 LINE L1 -1 6154 5744 1527 154 199 121 chr11 42223195 42224344 -106559128 + LTR12 LTR ERV1 481 2435 -3 665 207 0 0 chr11 42224344 42224479 -106558993 + L1MA6 LINE L1 4950 5084 -1062 344 206 0 0 chr11 42224480 42224548 -106558924 - AluY SINE Alu -5 296 229 1184 87 12 6 chr11 42224548 42224709 -106558763 - AluY SINE Alu -149 162 1 4452 176 46 33 chr11 42224709 42225913 -106557559 + L1MA6 LINE L1 5077 6299 -1 219 307 79 44 chr11 42226800 42226914 -106556558 + MIR SINE MIR 79 196 -66 269 243 291 10 chr11 42227162 42227265 -106556207 + L2 LINE L2 3137 3268 -4 218 337 56 11 chr11 42227437 42227526 -106555946 - L2 LINE L2 -33 3280 3188 368 323 64 18 chr11 42227575 42227795 -106555677 - MIR SINE MIR -13 249 20 1899 180 37 37 chr11 42228224 42228775 -106554697 - MLT2A2 LTR ERVL 0 554 1 3018 172 26 4 chr11 42228776 42229792 -106553680 - L1P4 LINE L1 -435 5731 4697 222 241 19 0 chr11 42230247 42230301 -106553171 + (TATATG)n Simple_repeat Simple_repeat 6 60 0 33 43 0 0 chr11 42231039 42231086 -106552386 + AT_rich Low_complexity Low_complexity 1 47 0 243 0 0 0 chr11 42231821 42231848 -106551624 + (T)n Simple_repeat Simple_repeat 1 27 0 1513 204 31 45 chr11 42232030 42232072 -106551400 + MLT1A1 LTR MaLR 13 54 -311 2114 102 10 26 chr11 42232072 42232385 -106551087 - AluY SINE Alu -3 308 1 1513 204 31 45 chr11 42232385 42232700 -106550772 + MLT1A1 LTR MaLR 54 365 0 2115 125 3 0 chr11 42233375 42233686 -106549786 - AluSx SINE Alu 0 312 1 431 281 115 75 chr11 42233686 42233964 -106549508 + L2 LINE L2 3024 3312 -1 252 0 0 0 chr11 42233997 42234025 -106549447 + (CA)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chr11 42235816 42235838 -106547634 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr11 42236522 42236546 -106546926 + AT_rich Low_complexity Low_complexity 1 24 0 189 331 39 66 chr11 42238895 42238947 -106544525 - MIR SINE MIR -59 203 151 2643 22 3 6 chr11 42238947 42239265 -106544207 - AluYb8 SINE Alu -1 317 1 189 331 39 66 chr11 42239265 42239393 -106544079 - MIR SINE MIR -111 151 28 1150 195 91 26 chr11 42239505 42239812 -106543660 - L1MB7 LINE L1 -7 6177 5851 339 243 40 72 chr11 42239950 42240013 -106543459 + MER103 DNA DNA 17 81 -85 2229 79 0 0 chr11 42240013 42240303 -106543169 - AluSg SINE Alu -20 290 1 339 243 40 72 chr11 42240303 42240391 -106543081 + MER103 DNA DNA 81 163 -3 204 365 26 9 chr11 42240478 42240593 -106542879 + MIR SINE MIR 32 148 -114 2763 170 85 11 chr11 42241109 42241663 -106541809 - L1MB1 LINE L1 0 6168 5574 22 0 0 0 chr11 42241916 42241938 -106541534 + AT_rich Low_complexity Low_complexity 1 22 0 28 61 0 0 chr11 42242283 42242332 -106541140 + AT_rich Low_complexity Low_complexity 1 49 0 526 267 79 41 chr11 42242667 42242933 -106540539 - L1ME3A LINE L1 0 6170 5895 714 297 134 18 chr11 42242957 42243466 -106540006 - L1ME3A LINE L1 -349 5821 5254 36 100 0 0 chr11 42243673 42243793 -106539679 + AT_rich Low_complexity Low_complexity 1 120 0 2247 208 62 52 chr11 42243821 42244174 -106539298 + L1MC3 LINE L1 6637 6985 -800 1959 138 42 33 chr11 42244174 42244535 -106538937 - THE1B LTR MaLR 0 364 1 10831 106 14 1 chr11 42244535 42246096 -106537376 - THE1B-int LTR MaLR 0 1580 1 2149 125 42 31 chr11 42246096 42246456 -106537016 - THE1B LTR MaLR 0 364 1 2247 208 62 52 chr11 42246456 42246712 -106536760 + L1MC3 LINE L1 6984 7254 -531 316 155 35 0 chr11 42246719 42246777 -106536695 + MSTA LTR MaLR 2 61 -367 563 328 25 20 chr11 42248510 42248714 -106534758 - MIR SINE MIR -16 246 42 22 35 0 0 chr11 42249253 42249282 -106534190 + AT_rich Low_complexity Low_complexity 1 29 0 2252 234 41 44 chr11 42249289 42249604 -106533868 + L1MA3 LINE L1 5365 5679 -626 2042 181 35 0 chr11 42249604 42249979 -106533493 - MLT1B LTR MaLR -2 388 1 2252 234 41 44 chr11 42249979 42250388 -106533084 + L1MA3 LINE L1 5679 6087 -218 1211 339 117 27 chr11 42250513 42251521 -106531951 + L2 LINE L2 237 1335 -1979 9461 254 27 21 chr11 42251602 42254152 -106529320 - L1PA12 LINE L1 -1337 5512 2900 2791 13 0 0 chr11 42254152 42254463 -106529009 + AluYa5 SINE Alu 1 311 0 9461 254 27 21 chr11 42254463 42255950 -106527522 - L1PA12 LINE L1 -3949 2900 1423 2101 130 3 9 chr11 42256078 42256393 -106527079 - AluSp SINE Alu 0 313 1 2388 194 2 11 chr11 42256690 42257139 -106526333 - L1PA12 LINE L1 -6404 445 1 354 347 38 45 chr11 42257398 42257811 -106525661 + L2 LINE L2 2227 2707 -607 519 285 51 73 chr11 42258120 42258394 -106525078 + L2 LINE L2 2611 2878 -436 34 65 0 0 chr11 42258878 42258940 -106524532 + AT_rich Low_complexity Low_complexity 1 62 0 348 277 58 36 chr11 42259313 42259450 -106524022 + L1MCb LINE L1 1040 1179 -4866 25 75 0 0 chr11 42260294 42260347 -106523125 + AT_rich Low_complexity Low_complexity 1 53 0 32 26 0 0 chr11 42260603 42260642 -106522830 + AT_rich Low_complexity Low_complexity 1 39 0 364 268 31 10 chr11 42260798 42260895 -106522577 - L2 LINE L2 -1 3312 3214 376 338 40 7 chr11 42261154 42261302 -106522170 - L2 LINE L2 -631 2683 2531 21 57 0 0 chr11 42261405 42261440 -106522032 + AT_rich Low_complexity Low_complexity 1 35 0 26 50 0 0 chr11 42261556 42261596 -106521876 + AT_rich Low_complexity Low_complexity 1 40 0 366 23 0 0 chr11 42262236 42262279 -106521193 + (TA)n Simple_repeat Simple_repeat 1 43 0 993 132 7 0 chr11 42262311 42262463 -106521009 - AluSg/x SINE Alu -22 288 136 881 121 15 0 chr11 42262463 42262595 -106520877 + AluSq/x SINE Alu 7 140 -173 200 111 22 0 chr11 42263188 42263233 -106520239 + (AAATG)n Simple_repeat Simple_repeat 5 50 0 1758 218 33 0 chr11 42263830 42264192 -106519280 - MLT1B LTR MaLR -16 374 1 2173 176 82 13 chr11 42264193 42264683 -106518789 + L1MA3 LINE L1 5673 6198 -107 2340 90 0 0 chr11 42264711 42265012 -106518460 - AluY SINE Alu -10 301 1 613 272 45 48 chr11 42265025 42265315 -106518157 + L1ME1 LINE L1 5834 6122 -44 406 264 18 42 chr11 42265203 42265370 -106518102 + L1MA10 LINE L1 6171 6333 -1 * 1193 217 149 41 chr11 42265700 42266079 -106517393 - MLT1C LTR MaLR -7 460 33 216 0 0 0 chr11 42266079 42266103 -106517369 + (TTG)n Simple_repeat Simple_repeat 1 24 0 1193 217 149 41 chr11 42266103 42266134 -106517338 - MLT1C LTR MaLR -434 33 7 1498 233 35 94 chr11 42266140 42266630 -106516842 - MLT1C-int LTR MaLR 0 1371 911 3438 230 30 32 chr11 42266773 42267655 -106515817 - MLT1C-int LTR MaLR -490 881 2 703 290 50 43 chr11 42267658 42267961 -106515511 - MLT1C LTR MaLR -2 465 161 22 0 0 0 chr11 42268162 42268184 -106515288 + AT_rich Low_complexity Low_complexity 1 22 0 548 212 88 15 chr11 42268256 42268393 -106515079 - MLT1C LTR MaLR -316 151 5 190 410 0 72 chr11 42268485 42268651 -106514821 + L2 LINE L2 3119 3272 0 186 103 0 0 chr11 42269140 42269169 -106514303 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 269 216 57 11 chr11 42269740 42269828 -106513644 + L1ME LINE L1 5768 5859 -262 21 0 0 0 chr11 42269837 42269858 -106513614 + AT_rich Low_complexity Low_complexity 1 21 0 403 322 62 19 chr11 42270170 42270237 -106513235 - MIR SINE MIR -1 261 198 8488 106 24 26 chr11 42270237 42271526 -106511946 + HSMAR1 DNA Mariner 2 1287 0 403 322 62 19 chr11 42271526 42271669 -106511803 - MIR SINE MIR -64 198 42 195 204 0 0 chr11 42271836 42271880 -106511592 + (CA)n Simple_repeat Simple_repeat 1 44 0 630 149 143 21 chr11 42272608 42272774 -106510698 + L1MA8 LINE L1 6101 6290 -1 293 0 0 26 chr11 42273480 42273518 -106509954 + (TG)n Simple_repeat Simple_repeat 2 38 0 459 301 208 21 chr11 42274105 42274441 -106509031 + L2 LINE L2 2359 2757 -557 3921 188 45 23 chr11 42274454 42275905 -106507567 + L1PB4 LINE L1 4316 5788 -368 229 32 0 0 chr11 42275932 42275963 -106507509 - L1PB4 LINE L1 -368 5788 5758 2003 156 39 0 chr11 42275971 42276331 -106507141 + L1PB4 LINE L1 5783 6156 0 621 309 125 36 chr11 42276331 42276817 -106506655 + L2 LINE L2 2776 3313 0 205 299 60 0 chr11 42277656 42277723 -106505749 + L2 LINE L2 3236 3306 -7 299 362 127 18 chr11 42277974 42278203 -106505269 + MIR SINE MIR 9 262 0 414 301 54 24 chr11 42278433 42278599 -106504873 + MIR SINE MIR 15 185 -77 463 291 58 6 chr11 42278647 42278819 -106504653 - MIR SINE MIR -69 193 13 216 266 0 2 chr11 42279244 42279297 -106504175 + MIR SINE MIR 61 112 -96 232 195 0 0 chr11 42279297 42279338 -106504134 - MSTA LTR MaLR 0 428 388 737 165 0 0 chr11 42279344 42279471 -106504001 - MSTA-int LTR MaLR -1097 554 428 * 1690 154 3 0 chr11 42279454 42279739 -106503733 - MSTA-int LTR MaLR -1365 286 1 1870 168 128 8 chr11 42279739 42280121 -106503351 - MSTA LTR MaLR 0 428 1 1384 228 64 105 chr11 42280180 42281112 -106502360 - LTR28 LTR ERV1 0 1020 1 214 244 25 17 chr11 42283018 42283137 -106500335 + (TATAA)n Simple_repeat Simple_repeat 5 124 0 282 125 0 0 chr11 42284195 42284243 -106499229 + (CA)n Simple_repeat Simple_repeat 1 48 0 536 290 59 31 chr11 42284530 42284785 -106498687 + MIR SINE MIR 1 262 0 607 118 0 0 chr11 42285071 42285164 -106498308 + MLT2A2 LTR ERVL 1 93 -360 36764 74 11 17 chr11 42285164 42288278 -106495194 + HERVL-A1 LTR ERVL 810 3887 -1767 2482 70 0 13 chr11 42288278 42288593 -106494879 + AluY SINE Alu 1 311 0 36764 74 11 17 chr11 42288593 42290351 -106493121 + HERVL-A1 LTR ERVL 3887 5654 0 2267 115 75 11 chr11 42290353 42290728 -106492744 + MLT2A1 LTR ERVL 6 404 -40 384 90 29 0 chr11 42290778 42290794 -106492678 + MLT2A2 LTR ERVL 399 413 -40 351 0 0 0 chr11 42290794 42290833 -106492639 + (CA)n Simple_repeat Simple_repeat 2 40 0 384 90 29 0 chr11 42290833 42290886 -106492586 + MLT2A2 LTR ERVL 413 453 0 270 0 0 0 chr11 42291737 42291767 -106491705 + (TA)n Simple_repeat Simple_repeat 2 31 0 1021 139 12 0 chr11 42291775 42291941 -106491531 - AluSg/x SINE Alu 0 312 145 952 123 14 0 chr11 42291942 42292080 -106491392 + AluSq/x SINE Alu 1 140 -172 200 111 22 0 chr11 42292679 42292724 -106490748 + (AAATG)n Simple_repeat Simple_repeat 5 50 0 2319 72 16 3 chr11 42294101 42294408 -106489064 - AluY SINE Alu 0 311 1 21 36 0 0 chr11 42294421 42294449 -106489023 + AT_rich Low_complexity Low_complexity 1 28 0 531 231 52 8 chr11 42295155 42295289 -106488183 + MER5A DNA MER1_type 2 141 -48 610 222 8 0 chr11 42295289 42295406 -106488066 + MER63 DNA MER1_type 43 786 -50 381 331 50 33 chr11 42295473 42295654 -106487818 + MIR SINE MIR 13 196 -66 11712 156 65 21 chr11 42297306 42298552 -106484920 + L1M1 LINE L1 1225 2414 -5151 1974 102 74 0 chr11 42298552 42298836 -106484636 + AluY SINE Alu 1 305 -6 11712 156 65 21 chr11 42298836 42299870 -106483602 + L1M1 LINE L1 2414 3606 -3959 953 126 0 15 chr11 42299873 42300008 -106483464 + AluSq/x SINE Alu 1 133 -179 8069 85 35 3 chr11 42300018 42300176 -106483296 - L1P3 LINE L1 -351 5803 5652 342 0 0 0 chr11 42300176 42300214 -106483258 + (TA)n Simple_repeat Simple_repeat 1 38 0 8069 85 35 3 chr11 42300214 42301633 -106481839 - L1P3 LINE L1 -502 5652 4178 522 69 42 0 chr11 42301632 42301704 -106481768 + L1P3 LINE L1 4089 4163 -1983 * 2082 137 0 6 chr11 42301729 42302043 -106481429 + AluSx SINE Alu 1 312 0 331 279 66 50 chr11 42303465 42303723 -106479749 + L1MC4 LINE L1 7567 7828 -214 225 65 0 0 chr11 42303797 42303828 -106479644 + (CA)n Simple_repeat Simple_repeat 2 32 0 25 0 0 0 chr11 42304005 42304030 -106479442 + AT_rich Low_complexity Low_complexity 1 25 0 2424 66 0 0 chr11 42304128 42304430 -106479042 - AluY SINE Alu -9 302 1 271 365 81 58 chr11 42304660 42305019 -106478453 + L2 LINE L2 130 496 -2818 279 257 54 0 chr11 42305020 42305094 -106478378 - MER58 DNA MER1_type -1 2419 2342 4149 26 10 12 chr11 42305165 42305672 -106477800 - L1PA4 LINE L1 -2 6153 5648 357 24 0 0 chr11 42305688 42305730 -106477742 + (CA)n Simple_repeat Simple_repeat 2 43 0 2496 27 3 0 chr11 42305849 42306145 -106477327 - L1PA5 LINE L1 -212 5942 5646 267 31 0 0 chr11 42306159 42306191 -106477281 + (CA)n Simple_repeat Simple_repeat 2 33 0 1489 305 215 27 chr11 42306322 42307125 -106476347 + L2 LINE L2 583 1233 -2081 2005 139 0 16 chr11 42307125 42307154 -106476318 - AluSx SINE Alu -1 311 283 333 0 0 0 chr11 42307154 42307191 -106476281 + (TG)n Simple_repeat Simple_repeat 2 38 0 2005 139 0 16 chr11 42307191 42307477 -106475995 - AluSx SINE Alu -29 283 1 1489 305 215 27 chr11 42307477 42307983 -106475489 + L2 LINE L2 1233 2139 -1175 427 298 43 58 chr11 42308061 42308249 -106475223 + Charlie2 DNA MER1_type 35 219 -2563 21 71 0 0 chr11 42309212 42309254 -106474218 + AT_rich Low_complexity Low_complexity 1 42 0 2222 77 0 17 chr11 42310718 42311017 -106472455 + AluY SINE Alu 1 294 -17 185 357 0 29 chr11 42311380 42311450 -106472022 - MIR SINE MIR -119 89 22 46 19 0 0 chr11 42311557 42311610 -106471862 + AT_rich Low_complexity Low_complexity 1 53 0 21 82 0 0 chr11 42312306 42312355 -106471117 + AT_rich Low_complexity Low_complexity 1 49 0 47 82 0 0 chr11 42312939 42313049 -106470423 + AT_rich Low_complexity Low_complexity 1 110 0 24 53 0 0 chr11 42313160 42313198 -106470274 + AT_rich Low_complexity Low_complexity 1 38 0 201 358 21 11 chr11 42313221 42313316 -106470156 + MIR SINE MIR 17 112 -150 25 31 0 0 chr11 42313458 42313490 -106469982 + AT_rich Low_complexity Low_complexity 1 32 0 2057 121 7 0 chr11 42314489 42314778 -106468694 + AluSq SINE Alu 1 291 -22 2480 54 0 0 chr11 42315898 42316195 -106467277 + AluY SINE Alu 1 297 -14 23 0 0 0 chr11 42316204 42316227 -106467245 + AT_rich Low_complexity Low_complexity 1 23 0 915 120 23 17 chr11 42317792 42317967 -106465505 + CT-rich Low_complexity Low_complexity 3 178 0 274 284 12 0 chr11 42318058 42318139 -106465333 + L2 LINE L2 3228 3309 -4 390 362 83 5 chr11 42318263 42318481 -106464991 - MIR SINE MIR 0 262 28 416 364 101 28 chr11 42318858 42319295 -106464177 + L2 LINE L2 1711 2179 -1135 791 152 23 15 chr11 42319312 42319582 -106463890 + CT-rich Low_complexity Low_complexity 1 272 0 1553 181 30 0 chr11 42319644 42319909 -106463563 + AluJb SINE Alu 1 273 -39 411 21 0 0 chr11 42319913 42319961 -106463511 + (CA)n Simple_repeat Simple_repeat 1 48 0 235 338 202 10 chr11 42319991 42320189 -106463283 + L2 LINE L2 2268 2503 -811 2135 141 13 11 chr11 42320221 42320598 -106462874 - L1MA8 LINE L1 -5 6286 5909 997 188 39 67 chr11 42320602 42320835 -106462637 - MER8 DNA MER2_type 0 239 12 1601 141 8 0 chr11 42320835 42321097 -106462375 - L1MA8 LINE L1 -385 5906 5643 421 393 62 4 chr11 42321099 42321341 -106462131 + L2 LINE L2 2517 2772 -542 2549 30 0 7 chr11 42321345 42321644 -106461828 + AluY SINE Alu 1 297 -14 321 312 8 23 chr11 42321766 42321943 -106461529 + GA-rich Low_complexity Low_complexity 1 174 0 1637 111 9 87 chr11 42321999 42322333 -106461139 + AluY SINE Alu 4 311 0 239 241 58 46 chr11 42322373 42322460 -106461012 + MLT1G1 LTR MaLR 508 595 0 777 282 52 33 chr11 42322528 42323036 -106460436 - L1MEd LINE L1 -3429 3135 2613 2154 118 10 0 chr11 42323036 42323341 -106460131 + AluSg SINE Alu 1 308 -2 777 282 52 33 chr11 42323341 42323406 -106460066 - L1MEd LINE L1 -3951 2613 2551 22 35 0 0 chr11 42323494 42323523 -106459949 + AT_rich Low_complexity Low_complexity 1 29 0 486 304 98 21 chr11 42323784 42324460 -106459012 - L1MEd LINE L1 -4640 2105 1340 262 258 119 20 chr11 42324569 42324720 -106458752 - L1MEd LINE L1 -4956 1089 924 658 161 6 0 chr11 42326414 42326575 -106456897 + (TA)n Simple_repeat Simple_repeat 1 162 0 1867 139 0 29 chr11 42327082 42327392 -106456080 + AluSx SINE Alu 1 301 -11 1117 243 31 7 chr11 42327433 42327721 -106455751 - MLT1A1 LTR MaLR 0 365 71 614 231 37 48 chr11 42327910 42328286 -106455186 - pTR5 LTR ERV1 -1326 1112 741 363 333 8 8 chr11 42328383 42328500 -106454972 + MIR SINE MIR 27 143 -119 412 296 68 0 chr11 42328519 42328651 -106454821 + MLT1G1 LTR MaLR 10 150 -445 343 221 54 67 chr11 42328875 42328993 -106454479 + MLT1H1 LTR MaLR 354 481 -74 2202 85 3 7 chr11 42328993 42329300 -106454172 + AluY SINE Alu 1 306 -5 343 221 54 67 chr11 42329300 42329374 -106454098 + MLT1H1 LTR MaLR 481 554 -1 1925 150 0 17 chr11 42329467 42329761 -106453711 + AluSx SINE Alu 4 292 -20 21 71 0 0 chr11 42329903 42329945 -106453527 + AT_rich Low_complexity Low_complexity 1 42 0 656 259 132 61 chr11 42330194 42330634 -106452838 + MLT1H LTR MaLR 72 542 -7 27 0 0 0 chr11 42330646 42330673 -106452799 + AT_rich Low_complexity Low_complexity 1 27 0 34 0 0 0 chr11 42330845 42330879 -106452593 + AT_rich Low_complexity Low_complexity 1 34 0 27 0 0 0 chr11 42331343 42331370 -106452102 + AT_rich Low_complexity Low_complexity 1 27 0 278 348 133 6 chr11 42333314 42333495 -106449977 - MIR SINE MIR -56 206 3 312 298 0 0 chr11 42333556 42333636 -106449836 + MER5B DNA MER1_type 84 152 -26 24 0 0 0 chr11 42334908 42334932 -106448540 + AT_rich Low_complexity Low_complexity 1 24 0 1440 173 7 7 chr11 42334941 42335230 -106448242 + L1MA4A LINE L1 6010 6298 -5 278 327 24 55 chr11 42335998 42336163 -106447309 + MIR3 SINE MIR 43 202 -6 249 240 10 20 chr11 42337196 42337256 -106446216 + (TA)n Simple_repeat Simple_repeat 2 62 -38 185 0 40 0 chr11 42337256 42337281 -106446191 + (TATAG)n Simple_repeat Simple_repeat 3 28 0 249 240 10 20 chr11 42337281 42337320 -106446152 + (TA)n Simple_repeat Simple_repeat 62 100 0 440 207 0 0 chr11 42337676 42337758 -106445714 - Tigger5 DNA MER2_type 0 2323 2242 353 244 0 0 chr11 42337835 42337913 -106445559 - Tigger5 DNA MER2_type -2244 79 2 2117 70 3 60 chr11 42338425 42338725 -106444747 + AluSg SINE Alu 1 283 -27 2358 66 3 0 chr11 42338791 42339080 -106444392 + AluY SINE Alu 1 290 -21 814 245 99 13 chr11 42339133 42339366 -106444106 - MIR SINE MIR -4 258 6 209 284 111 12 chr11 42339381 42339462 -106444010 - L2 LINE L2 -1000 2314 2226 2040 66 90 14 chr11 42339467 42339756 -106443716 + AluY SINE Alu 1 311 0 29 78 0 0 chr11 42340022 42340086 -106443386 + AT_rich Low_complexity Low_complexity 1 64 0 199 390 50 0 chr11 42340422 42340522 -106442950 - L2 LINE L2 -552 2762 2658 26 30 0 0 chr11 42341882 42341915 -106441557 + AT_rich Low_complexity Low_complexity 1 33 0 186 200 75 0 chr11 42342113 42342153 -106441319 - L2 LINE L2 0 3313 3271 874 236 12 45 chr11 42342258 42342500 -106440972 + L1M3a LINE L1 1 234 -5721 255 173 0 0 chr11 42342611 42342663 -106440809 + CT-rich Low_complexity Low_complexity 1 52 0 1644 265 73 14 chr11 42342667 42343286 -106440186 - L1MC4a LINE L1 0 7808 7154 431 310 109 0 chr11 42343403 42343577 -106439895 - MIR SINE MIR -59 203 11 576 308 30 5 chr11 42343736 42343934 -106439538 + MIR SINE MIR 50 252 -10 2185 117 10 3 chr11 42344203 42344511 -106438961 - AluSg SINE Alu 0 310 1 22 0 0 0 chr11 42344882 42344904 -106438568 + AT_rich Low_complexity Low_complexity 1 22 0 900 182 5 24 chr11 42345926 42346304 -106437168 + G-rich Low_complexity Low_complexity 1 370 0 221 305 104 19 chr11 42346510 42346633 -106436839 + MIR SINE MIR 15 139 -69 1794 218 45 19 chr11 42347245 42347820 -106435652 - MER82 DNA MER2_type 0 653 1 611 145 43 17 chr11 42348746 42348863 -106434609 + MLT2B1 LTR ERVL 401 520 0 245 313 50 12 chr11 42348895 42348975 -106434497 + L2 LINE L2 3096 3178 -94 242 193 160 160 chr11 42349174 42349324 -106434148 + MIR SINE MIR 112 261 -1 414 287 32 70 chr11 42349495 42349526 -106433946 + MIR SINE MIR 4 35 -227 2245 98 0 0 chr11 42349526 42349821 -106433651 + AluY SINE Alu 1 295 -16 414 287 32 70 chr11 42349821 42349946 -106433526 + MIR SINE MIR 35 154 -108 410 165 0 0 chr11 42349954 42350033 -106433439 + L1MA10 LINE L1 6254 6332 -2 236 278 69 14 chr11 42350285 42350357 -106433115 + L2 LINE L2 3195 3270 -2 213 269 0 45 chr11 42350473 42350540 -106432932 + L2 LINE L2 3248 3311 -2 * 236 308 150 8 chr11 42350535 42350668 -106432804 - MIR SINE MIR 0 262 111 339 336 53 34 chr11 42350865 42351073 -106432399 + MIR SINE MIR 38 249 -13 488 329 36 60 chr11 42352509 42352879 -106430593 - L2 LINE L2 -172 3141 2772 252 0 0 0 chr11 42352880 42352908 -106430564 + (T)n Simple_repeat Simple_repeat 1 28 0 307 214 18 42 chr11 42352968 42353136 -106430336 + CT-rich Low_complexity Low_complexity 2 165 0 308 135 19 0 chr11 42353418 42353470 -106430002 - MLT1A1 LTR MaLR -312 53 1 23 33 0 0 chr11 42353709 42353739 -106429733 + AT_rich Low_complexity Low_complexity 1 30 0 36 40 0 0 chr11 42354836 42354886 -106428586 + AT_rich Low_complexity Low_complexity 1 50 0 2010 74 0 0 chr11 42354894 42355179 -106428293 + AluY SINE Alu 39 323 0 16691 148 19 94 chr11 42355700 42359460 -106424012 + L1P LINE L1 12 3487 -2659 6808 70 6 1 chr11 42359460 42360855 -106422617 + L1PA8 LINE L1 4754 6165 -7 23 0 0 0 chr11 42361418 42361441 -106422031 + AT_rich Low_complexity Low_complexity 1 23 0 321 299 51 51 chr11 42361508 42361705 -106421767 + L2 LINE L2 2282 2478 -836 669 203 16 0 chr11 42362978 42363106 -106420366 - Tigger7 DNA MER2_type 0 2487 2358 * 3642 179 17 3 chr11 42363101 42363749 -106419723 - Tigger7 DNA MER2_type -1664 823 167 1860 239 42 2 chr11 42363837 42364357 -106419115 + L1M4 LINE L1 4382 4922 -1224 48 72 0 0 chr11 42364414 42364511 -106418961 + AT_rich Low_complexity Low_complexity 1 97 0 1108 196 31 54 chr11 42364685 42365002 -106418470 - L1MB8 LINE L1 -1 6177 5868 2263 65 41 3 chr11 42365074 42365365 -106418107 - AluY SINE Alu -6 305 4 237 275 174 28 chr11 42366440 42366549 -106416923 - MIR SINE MIR -33 229 105 3686 49 11 0 chr11 42366983 42367449 -106416023 + L1PA4 LINE L1 5683 6153 -2 21 57 0 0 chr11 42367779 42367814 -106415658 + AT_rich Low_complexity Low_complexity 1 35 0 255 170 0 0 chr11 42369586 42369633 -106413839 + (TG)n Simple_repeat Simple_repeat 2 48 0 1305 225 165 20 chr11 42370185 42370499 -106412973 - MSTD LTR MaLR 0 396 26 2489 160 40 5 chr11 42370499 42370944 -106412528 - LOR1b LTR ERV1 0 461 1 1305 225 165 20 chr11 42370944 42370975 -106412497 - MSTD LTR MaLR -370 26 1 1907 87 114 0 chr11 42372123 42372387 -106411085 - AluSq SINE Alu -19 294 1 249 210 0 0 chr11 42372617 42372679 -106410793 + GA-rich Low_complexity Low_complexity 4 65 0 263 229 16 0 chr11 42372880 42372941 -106410531 - MER112 DNA MER1_type -195 65 4 316 307 74 45 chr11 42373318 42373562 -106409910 - MIR SINE MIR 0 262 12 345 346 102 38 chr11 42374847 42375113 -106408359 - L1MB8 LINE L1 -2002 5806 5524 1959 226 106 0 chr11 42375353 42375901 -106407571 - L1MD3 LINE L1 -8 7987 7382 696 328 69 55 chr11 42376381 42377033 -106406439 - L1MB8 LINE L1 -1570 4576 3916 2234 107 0 3 chr11 42377090 42377390 -106406082 - AluSg1 SINE Alu -10 299 1 322 348 87 0 chr11 42377403 42377587 -106405885 - L1MB8 LINE L1 -2338 3808 3609 622 218 135 10 chr11 42377962 42378155 -106405317 + MLT1D LTR MaLR 23 239 -266 750 209 128 19 chr11 42378291 42378544 -106404928 - THE1B LTR MaLR -154 210 1 8669 158 7 38 chr11 42378544 42380092 -106403380 - THE1B-int LTR MaLR 0 1580 82 386 152 0 0 chr11 42380093 42380159 -106403313 - MSTA LTR MaLR -21 407 342 5261 132 27 11 chr11 42380167 42380970 -106402502 - THE1-int LTR MaLR -522 1058 243 2720 62 23 44 chr11 42380971 42381055 -106402417 + THE1B-int LTR MaLR 1202 1286 -294 2351 95 0 3 chr11 42381055 42381359 -106402113 + AluY SINE Alu 1 303 -8 2720 62 23 44 chr11 42381359 42381661 -106401811 + THE1B-int LTR MaLR 1286 1580 0 2041 126 75 31 chr11 42381661 42382010 -106401462 + THE1B LTR MaLR 1 364 0 1286 355 64 10 chr11 42382046 42382652 -106400820 - L2 LINE L2 -433 2881 2243 328 260 55 0 chr11 42382749 42382876 -106400596 + MER103 DNA DNA 14 147 -19 1756 129 16 0 chr11 42383524 42383780 -106399692 + AluSp SINE Alu 39 298 -15 2340 91 7 0 chr11 42384177 42384486 -106398986 - AluY SINE Alu 0 311 1 239 377 8 16 chr11 42384847 42384969 -106398503 + MIR SINE MIR 19 139 -123 619 200 0 0 chr11 42385009 42385114 -106398358 + U6 snRNA snRNA 2 106 -1 1325 224 29 40 chr11 42385126 42385667 -106397805 + L1MA9 LINE L1 2702 3399 -4167 * 2276 211 45 52 chr11 42385657 42386064 -106397408 + L1MA9 LINE L1 6800 7202 -529 189 74 0 0 chr11 42386064 42386091 -106397381 + (CA)n Simple_repeat Simple_repeat 2 28 0 2276 211 45 52 chr11 42386091 42386355 -106397117 + L1MA9 LINE L1 7202 7466 -265 2093 142 19 27 chr11 42386363 42386729 -106396743 - THE1B LTR MaLR -1 363 1 3173 118 2 0 chr11 42386729 42387168 -106396304 - THE1B-int LTR MaLR 0 1580 1141 349 268 0 72 chr11 42387353 42387547 -106395925 + A-rich Low_complexity Low_complexity 1 180 0 348 250 0 22 chr11 42387790 42387882 -106395590 + MIR SINE MIR 173 262 0 3375 151 11 8 chr11 42388634 42389242 -106394230 - L1MA6 LINE L1 0 6300 5691 2092 172 44 26 chr11 42389246 42389380 -106394092 + L1M2 LINE L1 5062 5192 -1108 180 0 0 0 chr11 42389380 42389400 -106394072 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2092 172 44 26 chr11 42389400 42389916 -106393556 + L1M2 LINE L1 5192 5721 -579 292 291 107 0 chr11 42390310 42390413 -106393059 - MIR SINE MIR -73 189 76 2265 91 3 0 chr11 42390492 42390790 -106392682 - AluSp SINE Alu -14 299 1 2286 84 7 0 chr11 42391407 42391715 -106391757 + AluY SINE Alu 2 311 0 767 250 20 10 chr11 42392332 42392536 -106390936 + LTR52 LTR ERVL 175 380 -41 286 177 32 16 chr11 42392673 42392735 -106390737 - HERVL74 LTR ERVL -4407 1278 1216 * 568 268 200 17 chr11 42392720 42392955 -106390517 + HERVL74 LTR ERVL 1720 1997 -3688 7360 33 5 0 chr11 42393435 42394601 -106388871 - L1PA3 LINE L1 -7 6148 4975 180 0 0 0 chr11 42395601 42395621 -106387851 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1930 127 7 0 chr11 42395627 42395902 -106387570 - AluSx SINE Alu -35 277 1 2118 127 0 0 chr11 42396866 42397158 -106386314 + AluSx SINE Alu 3 294 -18 26 0 9 0 chr11 42397158 42397225 -106386247 + AT_rich Low_complexity Low_complexity 1 26 0 2313 196 28 38 chr11 42399671 42400175 -106383297 - MLT1D LTR MaLR 0 505 7 329 282 13 0 chr11 42400277 42400355 -106383117 - MER2 DNA MER2_type 0 345 267 861 224 34 0 chr11 42400383 42400562 -106382910 - MER2 DNA MER2_type -160 185 1 458 312 7 14 chr11 42400786 42400927 -106382545 - MIR SINE MIR -105 157 18 779 327 8 4 chr11 42401596 42401850 -106381622 - MIR SINE MIR 0 262 8 3442 236 93 7 chr11 42402266 42403224 -106380248 + MER45B DNA AcHobo 1 1040 0 195 114 0 0 chr11 42403651 42403686 -106379786 + (TTA)n Simple_repeat Simple_repeat 2 36 0 275 258 161 21 chr11 42403686 42403779 -106379693 - MIR SINE MIR -76 186 81 1046 320 111 70 chr11 42403828 42404505 -106378967 + L2 LINE L2 735 1482 -1832 1796 138 3 24 chr11 42404505 42404803 -106378669 - AluSx SINE Alu -20 292 1 1046 320 111 70 chr11 42404803 42405292 -106378180 + L2 LINE L2 1482 1949 -1365 268 411 8 0 chr11 42405282 42405406 -106378066 + L2 LINE L2 2921 3045 -268 * 737 197 0 0 chr11 42405491 42405643 -106377829 - L1MC3 LINE L1 -8 7777 7626 4336 92 9 2 chr11 42405651 42406334 -106377138 + L1PA10 LINE L1 5182 5868 -300 593 141 20 0 chr11 42406435 42406534 -106376938 + L1PA10 LINE L1 6057 6157 -11 1016 211 137 58 chr11 42406543 42406908 -106376564 - L1MC3 LINE L1 -1628 6157 5800 * 2340 238 88 31 chr11 42406889 42407657 -106375815 - L1MA4A LINE L1 -6 6297 5486 3674 190 45 59 chr11 42407706 42407842 -106375630 - L1MB2 LINE L1 -8 6163 6027 1764 156 13 29 chr11 42407842 42408149 -106375323 + AluSx SINE Alu 2 303 -9 3674 190 45 59 chr11 42408149 42409070 -106374402 - L1MB2 LINE L1 -144 6027 5127 21 71 0 0 chr11 42409073 42409115 -106374357 + AT_rich Low_complexity Low_complexity 1 42 0 24 32 0 0 chr11 42409215 42409246 -106374226 + AT_rich Low_complexity Low_complexity 1 31 0 225 154 0 0 chr11 42410259 42410298 -106373174 + (CATA)n Simple_repeat Simple_repeat 2 40 0 268 381 79 28 chr11 42410394 42410609 -106372863 - MIR SINE MIR -31 231 6 199 186 23 0 chr11 42410701 42410744 -106372728 + L2 LINE L2 3269 3312 -1 1123 223 52 86 chr11 42411400 42411879 -106371593 + MLT1C LTR MaLR 1 463 -4 534 202 0 9 chr11 42413330 42413444 -106370028 - L1MC2 LINE L1 -1 6343 6231 809 201 0 0 chr11 42413483 42413637 -106369835 + FRAM SINE Alu 12 165 -11 722 312 26 21 chr11 42414124 42414454 -106369018 - MLT1G1 LTR MaLR -297 264 1 2233 252 75 68 chr11 42415436 42416712 -106366760 - L1M4c LINE L1 -2081 4301 3013 3342 84 20 0 chr11 42416712 42417154 -106366318 - MLT2A2 LTR ERVL 0 453 3 2233 252 75 68 chr11 42417154 42417232 -106366240 - L1M4c LINE L1 -3369 3013 2937 * 5993 168 6 15 chr11 42417229 42418352 -106365120 + L1PB1 LINE L1 4010 5142 -1009 2097 110 3 28 chr11 42418352 42418671 -106364801 + AluY SINE Alu 1 311 0 5993 168 6 15 chr11 42418671 42419373 -106364099 + L1PB1 LINE L1 5142 5815 -336 2464 77 0 0 chr11 42419373 42419684 -106363788 + AluY SINE Alu 1 311 0 5993 168 6 15 chr11 42419684 42420017 -106363455 + L1PB1 LINE L1 5815 6149 -2 1427 290 63 15 chr11 42420030 42420899 -106362573 - L1M4c LINE L1 -3435 2947 2041 1070 226 22 0 chr11 42421002 42421228 -106362244 + MLT2B3 LTR ERVL 1 231 -323 250 250 17 0 chr11 42421231 42421291 -106362181 + CT-rich Low_complexity Low_complexity 1 61 0 1116 284 4 4 chr11 42421297 42421547 -106361925 + MLT2B3 LTR ERVL 226 475 -79 9700 233 21 23 chr11 42421547 42421978 -106361494 + L1 LINE L1 2158 2588 -3558 1623 183 9 40 chr11 42421978 42422300 -106361172 - AluJb SINE Alu 0 312 1 9700 233 21 23 chr11 42422300 42424576 -106358896 + L1 LINE L1 2588 4859 -1287 2020 121 7 0 chr11 42424890 42425179 -106358293 + AluSq SINE Alu 1 291 -22 284 342 80 20 chr11 42425520 42425973 -106357499 + L1MEc LINE L1 1275 1754 -4642 21 0 0 0 chr11 42426070 42426091 -106357381 + AT_rich Low_complexity Low_complexity 1 21 0 3207 274 31 7 chr11 42426238 42427458 -106356014 + L1MEc LINE L1 2665 3913 -2302 1917 231 101 18 chr11 42427464 42428009 -106355463 + L1MC3 LINE L1 7097 7686 -99 968 218 34 27 chr11 42428010 42428304 -106355168 - L1M3 LINE L1 -912 5234 4939 * 2274 170 9 24 chr11 42428298 42428768 -106354704 + L1M3 LINE L1 5227 5689 -479 581 311 63 36 chr11 42428807 42429219 -106354253 + L1ME3A LINE L1 3080 3502 -2644 815 261 53 76 chr11 42429247 42429300 -106354172 + L1ME3A LINE L1 5424 5477 -685 2216 97 0 10 chr11 42429300 42429609 -106353863 + AluY SINE Alu 1 306 -5 815 261 53 76 chr11 42429609 42430081 -106353391 + L1ME3A LINE L1 5477 5937 -225 317 337 83 18 chr11 42430180 42430349 -106353123 + L1ME3A LINE L1 5989 6168 -2 2125 99 0 0 chr11 42430513 42430839 -106352633 - AluSx SINE Alu 0 326 1 389 274 94 60 chr11 42431284 42431518 -106351954 - MIR SINE MIR 0 262 21 235 340 19 47 chr11 42432326 42432432 -106351040 + L2 LINE L2 3137 3239 -33 252 0 0 0 chr11 42432440 42432468 -106351004 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2059 113 0 0 chr11 42432849 42433154 -106350318 - AluY SINE Alu 0 305 1 297 0 0 0 chr11 42433656 42433689 -106349783 + (TG)n Simple_repeat Simple_repeat 1 33 0 41 0 0 0 chr11 42433692 42433733 -106349739 + AT_rich Low_complexity Low_complexity 1 41 0 297 0 0 0 chr11 42434342 42434375 -106349097 + (TG)n Simple_repeat Simple_repeat 2 34 0 23 0 0 0 chr11 42434914 42434937 -106348535 + AT_rich Low_complexity Low_complexity 1 23 0 785 148 13 0 chr11 42435203 42435358 -106348114 + CT-rich Low_complexity Low_complexity 4 160 0 313 22 43 0 chr11 42435360 42435406 -106348066 + (GA)n Simple_repeat Simple_repeat 1 48 0 1090 47 0 0 chr11 42435406 42435534 -106347938 - AluY SINE Alu -183 128 1 21 57 0 0 chr11 42436008 42436043 -106347429 + AT_rich Low_complexity Low_complexity 1 35 0 210 262 84 28 chr11 42436066 42436173 -106347299 - MIR SINE MIR -99 163 51 303 271 96 43 chr11 42436386 42436574 -106346898 + L2 LINE L2 3115 3312 -1 1192 206 101 14 chr11 42436590 42436876 -106346596 + MLT1A2 LTR MaLR 14 324 -50 796 91 51 23 chr11 42436917 42437092 -106346380 + GA-rich Low_complexity Low_complexity 1 180 0 227 86 29 0 chr11 42437094 42437129 -106346343 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 301 305 99 73 chr11 42437180 42437524 -106345948 + L1ME4a LINE L1 5467 5819 -302 22 56 0 0 chr11 42437711 42437747 -106345725 + AT_rich Low_complexity Low_complexity 1 36 0 437 290 97 0 chr11 42438627 42438844 -106344628 + MER44D DNA MER2_type 1 508 -101 1310 157 121 49 chr11 42439078 42439384 -106344088 - L1MA5A LINE L1 -5 6292 5965 615 184 0 0 chr11 42439386 42439484 -106343988 + MER44D DNA MER2_type 512 609 0 291 167 60 12 chr11 42439560 42439644 -106343828 + L1ME4a LINE L1 5991 6078 -43 198 0 0 0 chr11 42441083 42441105 -106342367 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 23 0 0 0 chr11 42442330 42442353 -106341119 + AT_rich Low_complexity Low_complexity 1 23 0 216 111 0 0 chr11 42442433 42442469 -106341003 + (CA)n Simple_repeat Simple_repeat 1 36 0 220 240 21 31 chr11 42442962 42443058 -106340414 + T-rich Low_complexity Low_complexity 1 95 0 1834 166 135 5 chr11 42443470 42443849 -106339623 - MSTA LTR MaLR 0 428 1 1448 206 52 0 chr11 42443976 42444262 -106339210 + MLT1C LTR MaLR 7 307 -160 736 255 16 5 chr11 42444593 42444777 -106338695 - MLT1D LTR MaLR -2 503 318 35 24 0 0 chr11 42444791 42444833 -106338639 + AT_rich Low_complexity Low_complexity 1 42 0 2409 194 11 19 chr11 42444892 42445429 -106338043 - L1MA4 LINE L1 -14 6286 5754 649 239 34 91 chr11 42445432 42445626 -106337846 - MLT1D LTR MaLR -170 297 117 1776 163 48 0 chr11 42445626 42445915 -106337557 + AluSx SINE Alu 1 303 -9 649 239 34 91 chr11 42445915 42446022 -106337450 - MLT1D LTR MaLR -350 117 5 308 152 29 48 chr11 42446031 42446136 -106337336 + (CATATA)n Simple_repeat Simple_repeat 3 105 0 336 267 76 12 chr11 42446142 42446314 -106337158 + L1ME4a LINE L1 5936 6118 -3 2193 55 21 41 chr11 42446316 42446629 -106336843 + AluY SINE Alu 1 307 0 22 0 0 0 chr11 42447075 42447097 -106336375 + AT_rich Low_complexity Low_complexity 1 22 0 2190 213 14 27 chr11 42448594 42449111 -106334361 - MER67D LTR ERV1 0 514 5 2290 88 3 7 chr11 42449337 42449643 -106333829 - AluSc SINE Alu -4 305 1 1253 123 20 113 chr11 42449841 42450117 -106333355 - pTR5 LTR ERV1 -2039 399 17 5499 118 129 128 chr11 42450217 42451622 -106331850 + pTR5 LTR ERV1 1032 2438 0 3169 121 14 6 chr11 42451631 42452129 -106331343 + L1P LINE L1 2500 3001 -3145 2093 136 3 0 chr11 42452186 42452487 -106330985 - AluSx SINE Alu -10 302 1 22 80 0 0 chr11 42453298 42453348 -106330124 + AT_rich Low_complexity Low_complexity 1 50 0 2539 60 0 0 chr11 42453428 42453730 -106329742 + AluY SINE Alu 1 302 -9 342 231 0 0 chr11 42453736 42453827 -106329645 + (TATATG)n Simple_repeat Simple_repeat 3 93 0 1530 199 13 10 chr11 42453972 42454273 -106329199 - AluJo SINE Alu -10 302 1 305 369 38 6 chr11 42454446 42454603 -106328869 + MIR SINE MIR 1 162 -100 295 316 129 7 chr11 42454599 42454754 -106328718 + MIR SINE MIR 70 243 -19 * 1581 178 32 11 chr11 42454755 42455036 -106328436 - AluJb SINE Alu -20 292 6 1500 151 70 91 chr11 42455447 42455830 -106327642 - THE1C LTR MaLR 0 375 1 2087 123 3 0 chr11 42457419 42457712 -106325760 + AluSg SINE Alu 1 294 -16 24 53 0 0 chr11 42457912 42457950 -106325522 + AT_rich Low_complexity Low_complexity 1 38 0 216 232 126 105 chr11 42458165 42458260 -106325212 + MIR3 SINE MIR 10 106 -102 1252 135 54 162 chr11 42458607 42458825 -106324647 - AluJb SINE Alu -4 298 127 423 119 0 0 chr11 42458825 42458892 -106324580 + (TG)n Simple_repeat Simple_repeat 2 68 0 1252 135 54 162 chr11 42458892 42459006 -106324466 - AluJb SINE Alu -175 127 2 1456 206 27 20 chr11 42459316 42459608 -106323864 + AluJo SINE Alu 1 294 -18 442 231 62 98 chr11 42459642 42459867 -106323605 + MLT1J LTR MaLR 244 460 -51 216 332 71 36 chr11 42460180 42460376 -106323096 + MIR SINE MIR 47 249 -13 187 150 0 50 chr11 42460433 42460473 -106322999 + MIR SINE MIR 112 149 -113 3007 176 59 20 chr11 42460482 42461129 -106322343 - L1MB1 LINE L1 -9 6180 5509 1430 221 120 2 chr11 42461103 42461520 -106321952 - L1MB1 LINE L1 -1175 4971 4506 * 1192 146 31 26 chr11 42461520 42461746 -106321726 + MER50 LTR ERV1 1 227 -507 1476 189 8 4 chr11 42461750 42462015 -106321457 + MER50 LTR ERV1 432 697 -37 3298 229 98 36 chr11 42462036 42463118 -106320354 - L1MB1 LINE L1 -1637 4509 3361 4370 202 21 20 chr11 42463218 42464223 -106319249 + L1 LINE L1 3381 4386 -1760 3424 128 82 0 chr11 42464234 42464821 -106318651 + L1MA3 LINE L1 5664 6298 -7 2062 115 7 0 chr11 42464859 42465158 -106318314 + AluSg SINE Alu 1 301 0 2390 64 3 3 chr11 42465444 42465739 -106317733 - AluY SINE Alu -16 295 1 583 210 17 0 chr11 42465740 42465859 -106317613 + Tigger7 DNA MER2_type 2360 2480 -7 22 0 0 0 chr11 42465892 42465914 -106317558 + AT_rich Low_complexity Low_complexity 1 22 0 1715 133 0 33 chr11 42465921 42466191 -106317281 + AluSx SINE Alu 1 261 -51 1676 233 32 2 chr11 42466282 42466694 -106316778 - L1PB4 LINE L1 -3 6153 5730 542 259 126 96 chr11 42467181 42467552 -106315920 + MLT1H1 LTR MaLR 1 394 -161 2365 91 3 0 chr11 42467552 42467859 -106315613 - AluY SINE Alu -3 308 1 542 259 126 96 chr11 42467859 42468019 -106315453 + MLT1H1 LTR MaLR 394 548 -7 21 0 0 0 chr11 42468106 42468127 -106315345 + AT_rich Low_complexity Low_complexity 1 21 0 2508 60 0 0 chr11 42468414 42468714 -106314758 + AluY SINE Alu 1 300 -11 1007 189 17 0 chr11 42468765 42468945 -106314527 + AluJo SINE Alu 1 183 -129 23 33 0 0 chr11 42472053 42472083 -106311389 + AT_rich Low_complexity Low_complexity 1 30 0 6587 73 14 7 chr11 42472888 42474373 -106309099 - L1PA7 LINE L1 -2 6152 4661 200 33 0 33 chr11 42474392 42474422 -106309050 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 1853 56 0 0 chr11 42474425 42474658 -106308814 - L1PA5 LINE L1 -3 6151 5919 1504 34 0 0 chr11 42474659 42474837 -106308635 + L1PA5 LINE L1 5717 5894 -260 * 10600 108 1 18 chr11 42474834 42475829 -106307643 - L1PA7 LINE L1 -1470 4676 3717 2323 95 0 22 chr11 42475829 42476145 -106307327 - AluY SINE Alu 0 311 3 10600 108 1 18 chr11 42476145 42476768 -106306704 - L1PA7 LINE L1 -2429 3717 3085 2393 90 0 6 chr11 42477014 42477325 -106306147 - AluY SINE Alu -2 309 1 209 176 0 0 chr11 42477519 42477553 -106305919 + (ATG)n Simple_repeat Simple_repeat 3 36 0 1142 157 30 0 chr11 42477661 42477858 -106305614 + MLT2B1 LTR ERVL 1 203 -317 263 196 0 0 chr11 42477915 42477961 -106305511 + MLT2B2 LTR ERVL 470 515 0 25 65 0 0 chr11 42478092 42478138 -106305334 + AT_rich Low_complexity Low_complexity 1 46 0 559 314 11 17 chr11 42478216 42478391 -106305081 + MLT1J1 LTR MaLR 37 210 -236 25 31 0 0 chr11 42478723 42478755 -106304717 + AT_rich Low_complexity Low_complexity 1 32 0 1318 205 55 0 chr11 42479575 42479829 -106303643 + AluJo SINE Alu 13 280 -32 189 200 0 50 chr11 42479831 42479911 -106303561 + GA-rich Low_complexity Low_complexity 4 79 0 208 240 0 0 chr11 42481621 42481671 -106301801 + T-rich Low_complexity Low_complexity 3 52 0 2524 59 3 0 chr11 42481764 42482069 -106301403 + AluY SINE Alu 4 309 -2 396 184 15 140 chr11 42482225 42482361 -106301111 + LTR12 LTR ERV1 239 357 -357 639 267 24 19 chr11 42482777 42483038 -106300434 + LTR40a LTR ERVL 84 427 -35 1153 120 23 0 chr11 42483505 42483680 -106299792 + LOR1a-int LTR ERV1 5886 6064 -2056 572 136 0 0 chr11 42483679 42483760 -106299712 + LOR1a-int LTR ERV1 8030 8110 -10 * 2443 88 0 0 chr11 42483808 42484116 -106299356 - AluY SINE Alu -3 308 1 1845 205 11 55 chr11 42484134 42484382 -106299090 + LOR1a LTR ERV1 60 280 -217 1853 154 0 10 chr11 42484382 42484674 -106298798 - AluSx SINE Alu -2 310 22 1845 205 11 55 chr11 42484674 42484883 -106298589 + LOR1a LTR ERV1 280 497 0 244 313 0 0 chr11 42485352 42485416 -106298056 + L2 LINE L2 3209 3272 0 240 218 0 36 chr11 42486430 42486486 -106296986 - MIR SINE MIR -62 146 98 11236 151 18 2 chr11 42487620 42489368 -106294104 - HERVL18 LTR ERVL -2268 3779 2004 567 370 76 23 chr11 42489414 42489648 -106293824 - L1M3c LINE L1 -5716 425 160 2387 82 7 0 chr11 42489648 42489951 -106293521 - AluY SINE Alu -6 305 1 567 370 76 23 chr11 42489951 42490113 -106293359 - L1M3c LINE L1 -5981 160 8 215 30 0 30 chr11 42490391 42490424 -106293048 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 264 383 8 0 chr11 42490616 42490736 -106292736 + L2 LINE L2 3186 3306 -7 740 305 12 9 chr11 42491986 42492233 -106291239 + MIR SINE MIR 17 262 0 21 82 0 0 chr11 42492251 42492300 -106291172 + AT_rich Low_complexity Low_complexity 1 49 0 1151 250 110 5 chr11 42492549 42492947 -106290525 + MLT1E1 LTR MaLR 3 529 -125 2211 76 21 0 chr11 42492947 42493258 -106290214 + AluSc SINE Alu 1 309 0 1151 250 110 5 chr11 42493258 42493371 -106290101 + MLT1E1 LTR MaLR 529 629 -25 2532 64 0 3 chr11 42493371 42493683 -106289789 + AluY SINE Alu 1 311 0 306 0 0 0 chr11 42493872 42493906 -106289566 + (TA)n Simple_repeat Simple_repeat 2 35 0 2119 113 3 3 chr11 42493980 42494289 -106289183 + AluSc SINE Alu 1 309 0 1866 103 0 70 chr11 42495123 42495424 -106288048 + AluSg SINE Alu 31 310 0 2267 86 6 16 chr11 42495827 42496141 -106287331 + AluY SINE Alu 1 311 0 2056 126 0 3 chr11 42496236 42496573 -106286899 - AluSq SINE Alu 0 336 1 836 235 15 66 chr11 42496574 42496846 -106286626 - L1MD2 LINE L1 -29 6330 6073 2348 256 43 6 chr11 42496862 42497789 -106285683 - L1MD2 LINE L1 -352 6007 5047 1437 257 52 28 chr11 42497787 42498320 -106285152 + L1M4 LINE L1 3985 4530 -1616 * 1832 100 0 8 chr11 42498320 42498561 -106284911 - AluSc SINE Alu -68 241 3 1118 264 50 9 chr11 42498565 42499008 -106284464 + L1M4 LINE L1 4582 5042 -1104 819 263 60 27 chr11 42499496 42499797 -106283675 + MLT1E LTR MaLR 283 593 0 1619 100 168 0 chr11 42500110 42500242 -106283230 - AluSg1 SINE Alu -17 292 184 309 26 0 0 chr11 42500242 42500280 -106283192 + (TTA)n Simple_repeat Simple_repeat 1 38 0 1619 100 168 0 chr11 42500280 42500397 -106283075 - AluSg1 SINE Alu -125 184 1 1450 191 123 11 chr11 42501710 42502061 -106281411 - MLT1B LTR MaLR 0 390 1 267 54 0 0 chr11 42502575 42502612 -106280860 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 315 277 54 9 chr11 42502628 42502740 -106280732 - L1MB8 LINE L1 -5 6173 6057 6310 252 67 13 chr11 42502748 42505297 -106278175 - L1MB8 LINE L1 -311 5873 3130 2065 113 3 11 chr11 42505297 42505619 -106277853 + AluY SINE Alu 1 320 0 6310 252 67 13 chr11 42505619 42506080 -106277392 - L1MB8 LINE L1 -3054 3130 2695 421 277 0 0 chr11 42506084 42506203 -106277269 - L1MB8 LINE L1 -3559 2587 2469 5196 169 46 6 chr11 42506214 42507236 -106276236 - L1MC1 LINE L1 0 6333 5271 4185 168 46 26 chr11 42507354 42507542 -106275930 - L1 LINE L1 -3323 4242 4059 2269 92 3 3 chr11 42507542 42507834 -106275638 + AluY SINE Alu 1 292 -19 4185 168 46 26 chr11 42507834 42508172 -106275300 - L1 LINE L1 -3506 4059 3729 2361 91 0 7 chr11 42508172 42508480 -106274992 - AluY SINE Alu -5 306 1 4185 168 46 26 chr11 42508480 42509344 -106274128 - L1 LINE L1 -3836 3729 2826 42 20 0 0 chr11 42509436 42509485 -106273987 + AT_rich Low_complexity Low_complexity 1 49 0 180 0 0 0 chr11 42509506 42509526 -106273946 + (TAAAA)n Simple_repeat Simple_repeat 4 23 0 182 319 97 69 chr11 42510809 42510953 -106272519 - L2 LINE L2 -1150 2164 2017 274 316 20 0 chr11 42510963 42511061 -106272411 - LTR67 LTR ERVL -10 547 448 194 361 92 66 chr11 42511276 42511553 -106271919 - L2 LINE L2 -1391 1923 1655 2650 10 3 3 chr11 42511553 42511849 -106271623 + AluYa5 SINE Alu 1 296 -15 194 361 92 66 chr11 42511849 42511903 -106271569 - L2 LINE L2 -1659 1655 1604 1949 147 3 0 chr11 42511903 42512196 -106271276 + AluSx SINE Alu 7 300 -12 194 361 92 66 chr11 42512196 42512218 -106271254 - L2 LINE L2 -1710 1604 1584 2428 68 0 13 chr11 42512218 42512525 -106270947 + AluY SINE Alu 1 303 -8 194 361 92 66 chr11 42512525 42512618 -106270854 - L2 LINE L2 -1730 1584 1495 1917 161 122 8 chr11 42512618 42513002 -106270470 - MSTA LTR MaLR 0 428 1 194 361 92 66 chr11 42513002 42513267 -106270205 - L2 LINE L2 -1819 1495 1190 216 343 72 84 chr11 42513271 42513639 -106269833 - L2 LINE L2 -2260 1054 683 1815 193 50 21 chr11 42513639 42514059 -106269413 + MSTB1 LTR MaLR 1 432 0 216 343 72 84 chr11 42514059 42514527 -106268945 - L2 LINE L2 -2631 683 228 533 351 4 13 chr11 42514708 42514947 -106268525 - LTR16B LTR ERVL -25 439 203 224 373 107 41 chr11 42515334 42515728 -106267744 + L3 LINE CR1 459 878 -699 191 296 8 96 chr11 42515730 42515855 -106267617 + L3 LINE CR1 1042 1155 -422 275 330 21 0 chr11 42515942 42516039 -106267433 + L2 LINE L2 2877 2975 -338 1054 261 68 9 chr11 42516107 42516433 -106267039 - MER87 LTR ERV1 0 541 197 2317 116 52 0 chr11 42517280 42517626 -106265846 + THE1B LTR MaLR 1 364 0 9822 131 19 40 chr11 42517626 42518942 -106264530 + THE1B-int LTR MaLR 1 1278 -302 2171 107 0 26 chr11 42518942 42519251 -106264221 + AluY SINE Alu 1 301 -10 9822 131 19 40 chr11 42519251 42519542 -106263930 + THE1B-int LTR MaLR 1278 1574 -6 2146 140 37 3 chr11 42519547 42519897 -106263575 + THE1B LTR MaLR 1 362 -2 3564 176 41 59 chr11 42519936 42520610 -106262862 - MER49 LTR ERV1 -163 760 100 1827 181 0 10 chr11 42520610 42520924 -106262548 - AluSx SINE Alu 0 312 2 3564 176 41 59 chr11 42520924 42521023 -106262449 - MER49 LTR ERV1 -823 100 1 1160 195 142 32 chr11 42521023 42521305 -106262167 - MER49-int LTR ERV1 -1 7093 6445 932 208 35 30 chr11 42521306 42521503 -106261969 - MER49-int LTR ERV1 -622 6136 5939 477 206 37 47 chr11 42521503 42521675 -106261797 - MER87-int LTR ERV1 -1307 4891 3635 904 144 5 96 chr11 42521801 42521988 -106261484 - MER87-int LTR ERV1 -4165 3955 3786 5476 196 52 67 chr11 42522106 42523283 -106260189 - MER87-int LTR ERV1 -2148 4183 2990 2550 68 0 0 chr11 42523283 42523594 -106259878 - AluY SINE Alu 0 311 1 5476 196 52 67 chr11 42523594 42524739 -106258733 - MER87-int LTR ERV1 -3341 2990 686 5350 168 59 42 chr11 42523825 42525090 -106258382 - LTR57-int LTR ERVL -3754 1589 303 * 642 242 21 31 chr11 42525254 42525448 -106258024 - MER87-int LTR ERV1 -1408 378 187 1203 270 72 31 chr11 42525606 42526050 -106257422 - MER87 LTR ERV1 0 541 80 197 368 0 0 chr11 42526236 42526312 -106257160 + L2 LINE L2 2886 2961 -353 237 321 0 24 chr11 42526436 42526520 -106256952 + L2 LINE L2 3189 3270 -2 280 261 0 0 chr11 42526838 42526907 -106256565 + HsTC2 DNA Tc2 31 99 -1799 544 286 68 23 chr11 42527084 42527437 -106256035 + HsTC2 DNA Tc2 1529 1897 -1 727 271 99 52 chr11 42527560 42528006 -106255466 + MLT1C LTR MaLR 1 467 0 1105 233 105 7 chr11 42528036 42528341 -106255131 - MLT1C LTR MaLR -132 335 1 1711 196 19 35 chr11 42530114 42530481 -106252991 + MLT1A1 LTR MaLR 1 361 -4 255 346 85 0 chr11 42530507 42530637 -106252835 + L3 LINE CR1 1282 1422 -155 2160 120 3 0 chr11 42530804 42531104 -106252368 + AluSq SINE Alu 3 303 -10 393 241 73 84 chr11 42531256 42531517 -106251955 + MLT1K LTR MaLR 315 572 -16 22 35 0 0 chr11 42532048 42532077 -106251395 + AT_rich Low_complexity Low_complexity 1 29 0 39 0 0 0 chr11 42532176 42532215 -106251257 + AT_rich Low_complexity Low_complexity 1 39 0 1832 124 40 30 chr11 42532216 42532428 -106251044 + AluY SINE Alu 1 218 -93 5042 73 64 116 chr11 42532428 42533299 -106250173 - LTR12 LTR ERV1 0 826 1 1832 124 40 30 chr11 42533299 42533385 -106250087 + AluY SINE Alu 218 302 -9 280 338 83 0 chr11 42533418 42533563 -106249909 + MIR SINE MIR 91 247 -15 23 0 0 0 chr11 42533671 42533694 -106249778 + AT_rich Low_complexity Low_complexity 1 23 0 233 318 8 83 chr11 42533768 42533900 -106249572 - MIR SINE MIR -71 137 16 1406 195 49 42 chr11 42534256 42534543 -106248929 - AluJb SINE Alu -23 289 1 781 262 8 4 chr11 42536288 42536551 -106246921 - L1M4 LINE L1 -940 6017 5754 268 243 9 37 chr11 42536552 42536659 -106246813 - L1M4 LINE L1 -4766 2193 2090 1104 274 60 33 chr11 42536672 42537040 -106246432 - L1M4 LINE L1 -6372 487 110 257 208 13 0 chr11 42537078 42537155 -106246317 + (TA)n Simple_repeat Simple_repeat 1 78 0 258 192 0 0 chr11 42537229 42537281 -106246191 + (TA)n Simple_repeat Simple_repeat 2 53 0 1360 234 103 37 chr11 42537426 42537989 -106245483 - LTR48B LTR ERV1 -44 600 1 23 33 0 0 chr11 42538058 42538088 -106245384 + AT_rich Low_complexity Low_complexity 1 30 0 1773 87 19 41 chr11 42538536 42538802 -106244670 + AluSq SINE Alu 1 260 -53 1539 275 56 8 chr11 42538906 42539496 -106243976 - L1 LINE L1 -2978 3168 2551 2049 168 56 3 chr11 42539497 42539836 -106243636 - LTR18A LTR ERVL 0 357 1 12740 166 15 1 chr11 42539837 42541868 -106241604 - HERVL18 LTR ERVL 0 6047 3987 2028 130 3 0 chr11 42542466 42542779 -106240693 - AluSx SINE Alu 0 314 1 667 166 60 26 chr11 42542786 42542937 -106240535 - LTR54B LTR ERV1 -342 156 1 24 0 0 0 chr11 42544815 42544839 -106238633 + AT_rich Low_complexity Low_complexity 1 24 0 204 188 94 8 chr11 42545295 42545412 -106238060 + (CACAA)n Simple_repeat Simple_repeat 1 127 0 206 118 0 0 chr11 42546202 42546236 -106237236 + (T)n Simple_repeat Simple_repeat 1 34 0 21 57 0 0 chr11 42547028 42547063 -106236409 + AT_rich Low_complexity Low_complexity 1 35 0 366 80 0 0 chr11 42547549 42547599 -106235873 + (CA)n Simple_repeat Simple_repeat 1 50 0 1745 141 131 39 chr11 42549385 42549774 -106233698 - MSTA LTR MaLR -3 425 1 26 0 0 0 chr11 42549856 42549882 -106233590 + AT_rich Low_complexity Low_complexity 1 26 0 1860 160 58 50 chr11 42550206 42550606 -106232866 + MER57A LTR ERV1 1 403 0 26 30 0 0 chr11 42551476 42551509 -106231963 + AT_rich Low_complexity Low_complexity 1 33 0 7082 46 7 0 chr11 42551541 42552849 -106230623 - L1PA5 LINE L1 -8 6146 4841 9404 42 1 0 chr11 42552850 42554003 -106229469 + L1PA5 LINE L1 3704 4857 -1289 1250 97 0 0 chr11 42554003 42554168 -106229304 - AluSg/x SINE Alu -11 301 137 1699 123 0 54 chr11 42554898 42555174 -106228298 - AluY SINE Alu -20 291 31 4758 110 249 71 chr11 42555177 42556505 -106226967 - pTR5 LTR ERV1 0 2438 743 1918 124 22 0 chr11 42556759 42557075 -106226397 - AluSc SINE Alu 0 322 1 308 269 39 9 chr11 42557711 42557821 -106225651 + MIR SINE MIR 48 161 -71 1925 152 0 19 chr11 42558106 42558422 -106225050 - AluSx SINE Alu -2 310 1 823 254 91 13 chr11 42558520 42558827 -106224645 + Zaphod DNA AcHobo 404 734 -3297 1864 223 148 20 chr11 42558847 42559551 -106223921 + Zaphod DNA AcHobo 2409 3202 -829 3532 182 48 25 chr11 42559608 42560401 -106223071 - L1MB3 LINE L1 -4 6179 5369 336 197 0 28 chr11 42560919 42560990 -106222482 - LTR28 LTR ERV1 -4 1016 948 663 226 33 60 chr11 42561127 42561414 -106222058 - LTR1 LTR ERV1 -558 227 1 2665 193 10 2 chr11 42562477 42562970 -106220502 - LOR1a LTR ERV1 0 497 1 2071 108 0 41 chr11 42563177 42563472 -106220000 + AluSg SINE Alu 6 288 -22 417 228 89 51 chr11 42563583 42563741 -106219731 - LTR40c LTR ERVL -107 358 195 228 266 143 98 chr11 42564198 42564401 -106219071 - MIR SINE MIR -16 246 35 186 167 0 0 chr11 42565515 42565551 -106217921 + A-rich Low_complexity Low_complexity 5 40 0 342 254 40 40 chr11 42565641 42565767 -106217705 - MIR SINE MIR 0 262 137 804 114 23 0 chr11 42565801 42565932 -106217540 - L1MA5A LINE L1 -4 6293 6160 2407 210 35 8 chr11 42566369 42566879 -106216593 - MER34 LTR ERV1 -18 524 1 204 40 0 0 chr11 42567301 42567326 -106216146 + (TAGA)n Simple_repeat Simple_repeat 1 25 0 1503 199 7 7 chr11 42567380 42567667 -106215805 - AluJo SINE Alu -23 289 3 347 241 138 40 chr11 42568058 42568227 -106215245 - MER33 DNA MER1_type -2265 320 116 2330 85 0 3 chr11 42568227 42568532 -106214940 - AluY SINE Alu -7 304 1 347 241 138 40 chr11 42568532 42568615 -106214857 - MER33 DNA MER1_type -2469 116 43 5782 94 21 13 chr11 42568785 42569439 -106214033 - L1PA13 LINE L1 -3 6160 5513 345 24 0 0 chr11 42569439 42569481 -106213991 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2353 60 0 11 chr11 42569481 42569766 -106213706 - AluY SINE Alu -29 282 1 5782 94 21 13 chr11 42569766 42569778 -106213694 - L1PA13 LINE L1 -650 5513 5503 2372 100 0 0 chr11 42569778 42570077 -106213395 - AluY SINE Alu -10 301 3 5782 94 21 13 chr11 42570077 42571198 -106212274 - L1PA13 LINE L1 -660 5503 4352 198 0 0 0 chr11 42571206 42571228 -106212244 + (TTA)n Simple_repeat Simple_repeat 3 24 0 34448 40 4 2 chr11 42571228 42576271 -106207201 - L1PA4 LINE L1 -18 6137 1085 1512 149 0 4 chr11 42576269 42576517 -106206955 - L1PA13 LINE L1 -1813 4333 4087 * 7356 79 3 2 chr11 42676518 42677555 -106105917 + L1P LINE L1 3281 4318 -1828 199 244 0 22 chr11 42678010 42678055 -106105417 - MIR SINE MIR -8 254 211 * 207 286 0 0 chr11 42678024 42678066 -106105406 - L2 LINE L2 -27 3286 3245 35 54 0 0 chr11 42678168 42678224 -106105248 + AT_rich Low_complexity Low_complexity 1 56 0 190 338 54 14 chr11 42678361 42678435 -106105037 - L2 LINE L2 -40 3232 3156 337 259 56 9 chr11 42678645 42678753 -106104719 - MIR SINE MIR 0 262 150 1162 67 0 0 chr11 42678885 42679020 -106104452 - AluY SINE Alu -176 135 1 307 227 45 4 chr11 42679285 42679400 -106104072 + MIR SINE MIR 99 256 -6 190 330 19 48 chr11 42679589 42679692 -106103780 - L2 LINE L2 -14 3258 3159 226 343 55 0 chr11 42679822 42679895 -106103577 + L2 LINE L2 3196 3272 0 2258 198 54 9 chr11 42680118 42680149 -106103323 - L1MA8 LINE L1 -209 6082 6054 1894 173 0 3 chr11 42680149 42680449 -106103023 - AluSx SINE Alu -13 299 1 2258 198 54 9 chr11 42680449 42680957 -106102515 - L1MA8 LINE L1 -237 6054 5519 1848 137 0 0 chr11 42680959 42681222 -106102250 - AluSg SINE Alu -9 301 39 412 377 108 34 chr11 42682050 42682429 -106101043 + L2 LINE L2 2839 3245 -27 2374 76 0 3 chr11 42683002 42683306 -106100166 + AluY SINE Alu 1 303 -8 24 0 0 0 chr11 42683664 42683688 -106099784 + AT_rich Low_complexity Low_complexity 1 24 0 2446 82 0 3 chr11 42684665 42684971 -106098501 + AluY SINE Alu 5 309 -2 559 312 5 11 chr11 42685040 42685226 -106098246 - MLT2E LTR ERVL 0 628 444 213 344 8 55 chr11 42685457 42685585 -106097887 - L2 LINE L2 -1 3271 3150 387 0 0 0 chr11 42686958 42687001 -106096471 + (CA)n Simple_repeat Simple_repeat 2 44 0 314 280 178 13 chr11 42687189 42687346 -106096126 - HAL1b LINE L1 -13 1335 1153 398 279 40 33 chr11 42687348 42687798 -106095674 - HAL1b LINE L1 -228 1120 571 2287 244 132 65 chr11 42687830 42688871 -106094601 + LTR28 LTR ERV1 1 1755 0 2709 195 28 4 chr11 42688920 42689428 -106094044 + MLT2B1 LTR ERVL 1 520 0 2397 110 0 0 chr11 42689601 42689909 -106093563 - AluSx SINE Alu -4 308 1 2198 106 0 7 chr11 42689924 42690227 -106093245 - AluY SINE Alu -10 301 1 5024 146 29 22 chr11 42691634 42692531 -106090941 + MER4D LTR ERV1 1 903 0 192 274 0 20 chr11 42692531 42692576 -106090896 - L2 LINE L2 -8 3264 3221 532 313 79 29 chr11 42693039 42693279 -106090193 - MIR SINE MIR -3 259 8 226 355 26 52 chr11 42694113 42694268 -106089204 - MIR SINE MIR -106 156 6 1402 193 40 20 chr11 42694273 42694573 -106088899 - AluJo SINE Alu -6 306 1 886 258 35 5 chr11 42694644 42694842 -106088630 + MLT2B3 LTR ERVL 313 516 -38 270 117 39 52 chr11 42694842 42694919 -106088553 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 324 145 0 43 chr11 42694921 42694990 -106088482 + MLT2B1 LTR ERVL 455 520 0 * 1303 261 73 34 chr11 42694990 42695414 -106088058 + MLT1F LTR MaLR 102 542 0 180 0 0 0 chr11 42695644 42695664 -106087808 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 25 0 0 0 chr11 42696046 42696071 -106087401 + AT_rich Low_complexity Low_complexity 1 25 0 1205 280 133 64 chr11 42696076 42696519 -106086953 + MLT1G1 LTR MaLR 1 436 -106 21 0 0 0 chr11 42696699 42696720 -106086752 + AT_rich Low_complexity Low_complexity 1 21 0 245 136 23 0 chr11 42696836 42696880 -106086592 + MLT1G1 LTR MaLR 546 590 0 195 361 28 0 chr11 42696983 42697055 -106086417 + MIR SINE MIR 39 112 -150 557 28 14 0 chr11 42697155 42697226 -106086246 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 267 195 12 37 chr11 42697228 42697310 -106086162 + Charlie8 DNA MER1_type 87 166 -2251 22 0 0 0 chr11 42697480 42697502 -106085970 + AT_rich Low_complexity Low_complexity 1 22 0 208 121 0 0 chr11 42697547 42697580 -106085892 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 571 250 117 32 chr11 42697805 42697993 -106085479 + MER3 DNA MER1_type 5 208 -1 285 354 97 7 chr11 42698233 42698377 -106085095 - MIR3 SINE MIR -16 192 36 317 355 60 30 chr11 42699274 42699440 -106084032 + L2 LINE L2 3096 3266 -6 29 90 0 0 chr11 42700414 42700492 -106082980 + AT_rich Low_complexity Low_complexity 1 78 0 22 0 0 0 chr11 42700714 42700736 -106082736 + AT_rich Low_complexity Low_complexity 1 22 0 291 281 20 84 chr11 42700949 42700997 -106082475 - LTR67 LTR ERVL -2 555 505 1399 197 16 89 chr11 42700997 42701089 -106082383 - MER61A LTR ERV1 0 343 246 2396 57 0 44 chr11 42701089 42701406 -106082066 + AluY SINE Alu 2 304 -7 1399 197 16 89 chr11 42701406 42701683 -106081789 - MER61A LTR ERV1 -97 246 1 291 281 20 84 chr11 42701683 42701837 -106081635 - LTR67 LTR ERVL -52 505 366 234 250 16 0 chr11 42701991 42702055 -106081417 + GA-rich Low_complexity Low_complexity 2 66 0 23 54 0 0 chr11 42703024 42703061 -106080411 + AT_rich Low_complexity Low_complexity 1 37 0 185 159 23 0 chr11 42703981 42704025 -106079447 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 215 250 54 18 chr11 42704142 42704198 -106079274 - L2 LINE L2 -5 3267 3210 346 246 43 51 chr11 42704293 42704431 -106079041 - LTR27 LTR ERV1 -2 634 498 2072 211 31 23 chr11 42704525 42705119 -106078353 - LTR27 LTR ERV1 -141 495 3 1670 157 34 11 chr11 42705119 42705603 -106077869 - LTR27-int LTR ERV1 0 6995 3796 2209 105 13 0 chr11 42707046 42707350 -106076122 + AluSp SINE Alu 1 308 -5 29 0 0 0 chr11 42707350 42707379 -106076093 + AT_rich Low_complexity Low_complexity 1 29 0 1692 220 53 12 chr11 42708475 42708889 -106074583 + MLT1C LTR MaLR 34 464 -3 312 132 42 16 chr11 42708914 42709035 -106074437 + CT-rich Low_complexity Low_complexity 1 124 0 35 41 0 0 chr11 42709195 42709244 -106074228 + AT_rich Low_complexity Low_complexity 1 49 0 1693 178 3 17 chr11 42709710 42710008 -106073464 - AluJb SINE Alu -18 294 1 261 252 197 27 chr11 42710034 42710181 -106073291 - MIR SINE MIR -51 211 40 423 269 90 0 chr11 42710864 42710998 -106072474 + MIR SINE MIR 70 215 -47 289 292 100 23 chr11 42711038 42711168 -106072304 - L2 LINE L2 -9 3304 3165 1619 93 0 9 chr11 42711569 42711795 -106071677 + AluSg/x SINE Alu 84 307 -3 249 287 46 19 chr11 42712641 42712749 -106070723 + MIR SINE MIR 81 191 -71 1309 213 56 11 chr11 42712754 42713040 -106070432 + AluJo SINE Alu 2 300 -2 213 169 46 23 chr11 42713251 42713381 -106070091 + (TTATA)n Simple_repeat Simple_repeat 5 137 0 1460 141 26 4 chr11 42714525 42714759 -106068713 - L1PB3 LINE L1 -4 6150 5912 14566 146 42 31 chr11 42715120 42717808 -106065664 + Tigger2 DNA MER2_type 2 2717 -1 187 400 11 11 chr11 42718299 42718389 -106065083 + L2 LINE L2 3141 3230 -42 287 304 26 9 chr11 42719818 42719933 -106063539 - MIR SINE MIR -55 207 91 197 167 19 0 chr11 42722954 42723008 -106060464 + (TA)n Simple_repeat Simple_repeat 2 56 0 280 274 124 90 chr11 42723036 42723105 -106060367 + MLT1J LTR MaLR 159 224 -287 2106 118 3 13 chr11 42723105 42723418 -106060054 - AluSq SINE Alu -3 310 1 280 274 124 90 chr11 42723418 42723582 -106059890 + MLT1J LTR MaLR 224 400 -111 243 0 0 0 chr11 42723638 42723665 -106059807 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1290 217 63 114 chr11 42725621 42726285 -106057187 - L1MC4 LINE L1 -19 8023 7394 1227 245 184 21 chr11 42726296 42727202 -106056270 - L1MD3 LINE L1 -1 7994 6723 2133 115 13 3 chr11 42727998 42728303 -106055169 - AluSg SINE Alu -2 308 1 275 231 0 13 chr11 42728473 42728551 -106054921 + CT-rich Low_complexity Low_complexity 2 78 0 2200 86 0 16 chr11 42729485 42729788 -106053684 - AluSq SINE Alu -15 298 1 202 222 0 37 chr11 42729790 42729844 -106053628 + CT-rich Low_complexity Low_complexity 3 54 0 278 332 107 21 chr11 42732139 42732326 -106051146 + MIR SINE MIR 6 208 -54 258 343 20 20 chr11 42732516 42732618 -106050854 + L2 LINE L2 3171 3272 0 24 67 0 0 chr11 42732704 42732749 -106050723 + AT_rich Low_complexity Low_complexity 1 45 0 22 35 0 0 chr11 42733907 42733936 -106049536 + AT_rich Low_complexity Low_complexity 1 29 0 256 250 24 0 chr11 42734361 42734445 -106049027 + MLT1I LTR MaLR 324 409 0 620 274 95 74 chr11 42735857 42736237 -106047235 + MLT1I LTR MaLR 3 390 -19 21 57 0 0 chr11 42737073 42737108 -106046364 + AT_rich Low_complexity Low_complexity 1 35 0 304 227 0 0 chr11 42737188 42737254 -106046218 - MLT1K LTR MaLR 0 588 523 359 307 39 16 chr11 42737284 42737411 -106046061 - MLT1K LTR MaLR -128 460 331 609 195 125 8 chr11 42737456 42737584 -106045888 - Tigger7 DNA MER2_type -561 144 2 659 178 67 7 chr11 42738123 42738258 -106045214 - FLAM_C SINE Alu 0 143 1 369 0 0 0 chr11 42738781 42738822 -106044650 + (CA)n Simple_repeat Simple_repeat 2 42 0 1166 22 0 0 chr11 42739057 42739193 -106044279 - L1PA7 LINE L1 -274 5880 5745 1831 69 0 29 chr11 42739193 42739462 -106044010 + L1PA7 LINE L1 5889 6154 0 21 0 0 0 chr11 42739568 42739589 -106043883 + AT_rich Low_complexity Low_complexity 1 21 0 2479 103 17 3 chr11 42739668 42740018 -106043454 + THE1A LTR MaLR 1 355 0 10793 94 13 22 chr11 42740018 42741607 -106041865 + THE1A-int LTR MaLR 1 1575 -5 1815 123 0 78 chr11 42741617 42742000 -106041472 + THE1A LTR MaLR 3 355 0 236 229 0 21 chr11 42742000 42742048 -106041424 - L2 LINE L2 -268 3045 2999 180 0 0 0 chr11 42742439 42742459 -106041013 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2196 101 0 7 chr11 42743067 42743373 -106040099 + AluY SINE Alu 1 304 -7 192 368 70 9 chr11 42743544 42743658 -106039814 - MIR SINE MIR -137 125 5 222 150 0 0 chr11 42744260 42744300 -106039172 + (TG)n Simple_repeat Simple_repeat 1 40 0 265 393 50 7 chr11 42745679 42745819 -106037653 - MIR SINE MIR -71 191 46 1386 184 53 28 chr11 42746009 42746291 -106037181 + AluJb SINE Alu 5 293 -19 360 309 45 72 chr11 42746622 42746998 -106036474 - MLT1L LTR MaLR -137 478 113 1626 120 4 23 chr11 42747153 42747412 -106036060 - AluSx SINE Alu -58 254 1 1345 186 68 4 chr11 42747461 42747740 -106035732 - L1P LINE L1 -2223 3923 3627 2120 150 17 3 chr11 42747742 42748102 -106035370 + L1PA16 LINE L1 5797 6161 -5 1375 246 84 25 chr11 42751655 42752155 -106031317 - MER39 LTR ERV1 0 682 1 224 294 15 0 chr11 42752155 42752223 -106031249 + L2 LINE L2 2606 2674 -640 3725 153 35 23 chr11 42752233 42752927 -106030545 - MER39 LTR ERV1 -5 702 1 338 269 0 13 chr11 42752928 42753006 -106030466 + L2 LINE L2 2672 2748 -566 691 182 62 73 chr11 42753014 42753086 -106030386 - MLT1D LTR MaLR 0 505 434 1931 148 154 5 chr11 42753086 42753457 -106030015 - MSTA LTR MaLR 0 428 3 691 182 62 73 chr11 42753457 42753576 -106029896 - MLT1D LTR MaLR -71 434 316 * 3162 161 29 19 chr11 42753571 42754154 -106029318 + MER39B LTR ERV1 65 653 0 1193 236 49 3 chr11 42754154 42754431 -106029041 - MLT1D LTR MaLR -189 316 27 748 289 105 36 chr11 42754698 42755415 -106028057 + L1ME3A LINE L1 5188 5952 -218 23 0 0 0 chr11 42756484 42756507 -106026965 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr11 42759737 42759764 -106023708 + AT_rich Low_complexity Low_complexity 1 27 0 28 48 0 0 chr11 42761402 42761444 -106022028 + AT_rich Low_complexity Low_complexity 1 42 0 520 311 0 20 chr11 42761500 42761648 -106021824 - MIR SINE MIR -112 150 6 2401 60 0 0 chr11 42761992 42762277 -106021195 + AluY SINE Alu 1 285 -26 182 387 13 0 chr11 42762333 42762408 -106021064 + MIR SINE MIR 187 262 0 189 121 0 0 chr11 42762696 42762729 -106020743 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 409 278 34 51 chr11 42762833 42763009 -106020463 - L2 LINE L2 -33 3280 3108 1308 253 8 23 chr11 42763229 42763708 -106019764 + L1M4 LINE L1 2863 3334 -2812 528 278 210 4 chr11 42763717 42763998 -106019474 - L1M4 LINE L1 -1601 4545 4207 1646 95 0 9 chr11 42764009 42764231 -106019241 + AluSq SINE Alu 76 295 -18 230 264 48 96 chr11 42764245 42764412 -106019060 - L2 LINE L2 -1501 1813 1655 207 0 0 0 chr11 42765597 42765620 -106017852 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 180 77 0 0 chr11 42766120 42766146 -106017326 + (TTA)n Simple_repeat Simple_repeat 2 27 0 227 176 20 0 chr11 42766894 42766945 -106016527 + HsTC2 DNA Tc2 6 57 -1841 2009 215 32 24 chr11 42766985 42767519 -106015953 - L1 LINE L1 -946 5200 4663 626 149 36 18 chr11 42767593 42767761 -106015711 + GA-rich Low_complexity Low_complexity 3 173 0 4577 170 46 25 chr11 42767763 42768247 -106015225 + L1MA9 LINE L1 5293 5765 -547 363 105 0 0 chr11 42768247 42768304 -106015168 + (CA)n Simple_repeat Simple_repeat 2 58 0 4577 170 46 25 chr11 42768304 42768818 -106014654 + L1MA9 LINE L1 5765 6312 0 324 262 55 35 chr11 42768840 42769042 -106014430 + HsTC2 DNA Tc2 1649 1854 -44 218 31 0 31 chr11 42769288 42769320 -106014152 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 1864 123 0 51 chr11 42769325 42769617 -106013855 - AluSx SINE Alu -35 277 1 5147 49 0 17 chr11 42770193 42770885 -106012587 - L1P LINE L1 -4064 2082 1403 * 25534 30 3 9 chr11 42770883 42774882 -106008590 + L1PA3 LINE L1 2182 6155 0 262 315 35 112 chr11 42775351 42775583 -106007889 - L2 LINE L2 -22 3291 3078 535 301 136 29 chr11 42775639 42776058 -106007414 - HAL1 LINE L1 -1244 1263 800 274 236 47 95 chr11 42776080 42776228 -106007244 + MLT1D LTR MaLR 4 144 -482 798 155 16 96 chr11 42776268 42776455 -106007017 + MLT1D LTR MaLR 334 505 0 4432 96 0 21 chr11 42777312 42778021 -106005451 + L1PA3 LINE L1 5462 6155 0 189 0 0 0 chr11 42779405 42779426 -106004046 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 244 233 33 0 chr11 42779651 42779711 -106003761 + GA-rich Low_complexity Low_complexity 1 62 0 14273 148 26 21 chr11 42780877 42782727 -106000745 - Tigger4(Zombi) DNA MER2_type 0 2731 864 2141 76 0 73 chr11 42782727 42783056 -106000416 - AluY SINE Alu -6 305 1 14273 148 26 21 chr11 42783056 42783702 -105999770 - Tigger4(Zombi) DNA MER2_type -1867 864 223 2293 253 48 40 chr11 42783752 42784476 -105998996 + MER21B LTR ERV1 27 756 -107 1964 179 129 18 chr11 42785078 42785295 -105998177 + L1MB5 LINE L1 5677 5869 -305 1716 205 8 16 chr11 42785295 42785661 -105997811 - MLT1A1 LTR MaLR -2 363 1 1964 179 129 18 chr11 42785661 42785887 -105997585 + L1MB5 LINE L1 5869 6174 0 625 311 111 36 chr11 42786197 42786470 -105997002 - L2 LINE L2 0 3313 3062 2186 126 39 17 chr11 42786470 42786826 -105996646 - THE1B LTR MaLR 0 364 1 625 311 111 36 chr11 42786826 42787057 -105996415 - L2 LINE L2 -251 3062 2768 245 138 0 17 chr11 42788245 42788303 -105995169 + (CA)n Simple_repeat Simple_repeat 1 57 0 231 109 16 31 chr11 42788307 42788371 -105995101 + (TTTTTA)n Simple_repeat Simple_repeat 3 65 0 6357 21 1 5 chr11 42788373 42789133 -105994339 - L1PA4 LINE L1 -3 6152 5396 23 0 0 0 chr11 42789133 42789156 -105994316 + AT_rich Low_complexity Low_complexity 1 23 0 33 85 0 0 chr11 42789692 42789774 -105993698 + AT_rich Low_complexity Low_complexity 1 82 0 1023 294 65 20 chr11 42790234 42790593 -105992879 - L1ME3 LINE L1 -46 6116 5722 1446 173 30 104 chr11 42790593 42790987 -105992485 - MLT1A1 LTR MaLR 0 365 1 1023 294 65 20 chr11 42790987 42791209 -105992263 - L1ME3 LINE L1 -440 5722 5511 1442 274 74 13 chr11 42791222 42791894 -105991578 - L1ME3 LINE L1 -1062 5084 4372 25 83 0 0 chr11 42791911 42791959 -105991513 + AT_rich Low_complexity Low_complexity 1 48 0 1252 276 104 8 chr11 42791962 42792633 -105990839 - L1ME3 LINE L1 -2911 3235 2500 561 251 60 50 chr11 42792927 42793246 -105990226 - L1ME3 LINE L1 -3704 2442 2121 585 253 19 7 chr11 42793346 42793500 -105989972 + MER58A DNA MER1_type 9 164 0 389 227 10 0 chr11 42795411 42795508 -105987964 + L1ME1 LINE L1 6064 6161 -5 35 45 0 0 chr11 42795773 42795817 -105987655 + AT_rich Low_complexity Low_complexity 1 44 0 1006 122 13 0 chr11 42795817 42795973 -105987499 - L1PB1 LINE L1 -1 6150 5993 672 81 36 0 chr11 42795973 42796084 -105987388 + L1PB1 LINE L1 5713 5827 -324 303 397 23 11 chr11 42796087 42796261 -105987211 - MIR SINE MIR -83 179 4 303 71 0 0 chr11 42796331 42796373 -105987099 + (ATG)n Simple_repeat Simple_repeat 3 44 0 308 325 25 31 chr11 42796430 42796590 -105986882 - MIR SINE MIR -32 230 72 219 36 0 0 chr11 42798400 42798428 -105985044 + (GA)n Simple_repeat Simple_repeat 2 29 0 25 51 0 0 chr11 42799301 42799340 -105984132 + AT_rich Low_complexity Low_complexity 1 39 0 213 231 0 19 chr11 42800281 42800333 -105983139 + (CATA)n Simple_repeat Simple_repeat 4 54 0 196 358 73 36 chr11 42800644 42800781 -105982691 - MIR SINE MIR -115 147 6 201 196 0 0 chr11 42800815 42800861 -105982611 + (TG)n Simple_repeat Simple_repeat 1 46 0 10061 54 1 9 chr11 42801226 42802620 -105980852 - L1PA5 LINE L1 -1936 4210 2828 9069 54 14 2 chr11 42802620 42804554 -105978918 + L1PA5 LINE L1 4215 6152 -2 2331 301 114 55 chr11 42804668 42806387 -105977085 - L2 LINE L2 -50 3263 1437 515 330 133 0 chr11 42806404 42806607 -105976865 + MIR SINE MIR 12 241 -21 2231 88 0 7 chr11 42806688 42806985 -105976487 - AluY SINE Alu -16 295 1 1909 101 0 8 chr11 42807332 42807600 -105975872 - AluY SINE Alu -16 295 30 2479 53 0 50 chr11 42807854 42808176 -105975296 + AluY SINE Alu 2 307 -4 186 264 0 88 chr11 42809223 42809314 -105974158 - L2 LINE L2 -10 3303 3221 2332 72 0 3 chr11 42809507 42809798 -105973674 + AluY SINE Alu 1 290 -21 2926 214 23 12 chr11 42811304 42811964 -105971508 + Tigger7 DNA MER2_type 2 668 -1819 588 127 0 148 chr11 42811980 42812122 -105971350 + Tigger7 DNA MER2_type 2455 2575 -12 365 241 11 0 chr11 42812172 42812259 -105971213 - MIR SINE MIR -2 260 173 2380 190 51 68 chr11 42812287 42812993 -105970479 + LTR8A LTR ERV1 34 727 0 608 289 126 16 chr11 42813343 42813589 -105969883 - LTR16A LTR ERVL 0 450 178 325 219 0 0 chr11 42813728 42813801 -105969671 - MER116 DNA Mariner -7 73 1 758 238 30 26 chr11 42814258 42814489 -105968983 - MLT1D LTR MaLR -273 232 1 5573 223 22 92 chr11 42815629 42817386 -105966086 + L1MA9 LINE L1 3 1637 -5531 501 224 24 0 chr11 42817386 42817511 -105965961 + L1MA9 LINE L1 1921 2048 -5120 2676 207 69 36 chr11 42817536 42818052 -105965420 + L1MA9 LINE L1 6434 6986 -347 189 0 0 0 chr11 42818052 42818073 -105965399 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 2676 207 69 36 chr11 42818073 42818338 -105965134 + L1MA9 LINE L1 6986 7241 -92 213 195 0 24 chr11 42818340 42818381 -105965091 + (TG)n Simple_repeat Simple_repeat 2 41 0 28 0 0 0 chr11 42818423 42818451 -105965021 + AT_rich Low_complexity Low_complexity 1 28 0 354 320 62 8 chr11 42819898 42820154 -105963318 - L1ME LINE L1 -317 5804 5535 1478 217 41 78 chr11 42820551 42821169 -105962303 - LTR28 LTR ERV1 -67 953 298 520 197 21 21 chr11 42821222 42821376 -105962096 - LTR28 LTR ERV1 -292 133 1 1147 191 0 13 chr11 42821470 42821701 -105961771 - L1PA16 LINE L1 -9 6157 5930 484 139 12 12 chr11 42821702 42821788 -105961684 + L1MC1 LINE L1 6244 6329 -4 960 126 0 0 chr11 42822261 42822412 -105961060 + (TA)n Simple_repeat Simple_repeat 2 152 0 2289 43 54 0 chr11 42822412 42822690 -105960782 - AluY SINE Alu -18 293 1 329 303 101 0 chr11 42823062 42823240 -105960232 + Charlie8 DNA MER1_type 70 265 -2152 247 329 24 12 chr11 42823525 42823607 -105959865 - L2 LINE L2 -16 3297 3215 614 199 0 23 chr11 42823921 42824097 -105959375 + (TA)n Simple_repeat Simple_repeat 1 172 0 406 295 81 23 chr11 42824126 42824299 -105959173 - MIR SINE MIR -48 214 32 1062 229 4 8 chr11 42825029 42825265 -105958207 + MLT1E2 LTR MaLR 389 623 -3 1676 64 57 43 chr11 42825491 42825772 -105957700 + AluY SINE Alu 1 285 -26 1834 113 0 39 chr11 42826490 42826801 -105956671 - AluSx SINE Alu -13 299 1 354 213 14 28 chr11 42827359 42827500 -105955972 + (CATA)n Simple_repeat Simple_repeat 4 142 0 326 216 23 45 chr11 42827506 42827594 -105955878 - L1MC4 LINE L1 -1340 6702 6617 1719 213 109 9 chr11 42827708 42828158 -105955314 - MER50 LTR ERV1 0 734 240 391 149 15 0 chr11 42828242 42828309 -105955163 - MER50 LTR ERV1 -657 77 10 564 308 43 53 chr11 42828506 42828805 -105954667 + L2 LINE L2 3013 3308 -5 252 170 0 0 chr11 42828883 42828936 -105954536 + GA-rich Low_complexity Low_complexity 3 55 0 2785 148 82 59 chr11 42829032 42829640 -105953832 + LTR29 LTR ERV1 1 622 0 1312 132 15 0 chr11 42830229 42830433 -105953039 - LTR62 LTR ERVK -2 717 511 974 166 32 0 chr11 42830429 42830616 -105952856 - MER50 LTR ERV1 -23 711 519 * 1260 183 109 67 chr11 42830619 42831051 -105952421 + LTR7 LTR ERV1 1 450 0 14519 171 24 35 chr11 42831051 42836297 -105947175 + HERVH LTR ERV1 1 4915 -2287 1372 180 4 0 chr11 42836294 42836561 -105946911 + HERVH LTR ERV1 5749 6016 -1697 * 3296 102 11 33 chr11 42836554 42837124 -105946348 + HERVH LTR ERV1 7157 7713 0 1299 178 102 60 chr11 42837124 42837556 -105945916 + LTR7 LTR ERV1 1 450 0 2015 178 0 6 chr11 42837556 42837921 -105945551 - MER50 LTR ERV1 -214 520 158 4744 118 4 31 chr11 42837924 42838556 -105944916 + L1MA2 LINE L1 5495 6102 -202 2216 91 7 0 chr11 42838556 42838841 -105944631 + AluSq SINE Alu 1 287 -26 4744 118 4 31 chr11 42838841 42839014 -105944458 + L1MA2 LINE L1 6102 6278 -26 1173 176 36 24 chr11 42839014 42839264 -105944208 + THE1C LTR MaLR 123 375 0 8226 143 63 20 chr11 42839267 42840779 -105942693 + THE1C-int LTR MaLR 4 1580 0 1733 184 18 44 chr11 42840779 42841164 -105942308 + THE1C LTR MaLR 1 375 0 2052 102 27 24 chr11 42841204 42841498 -105941974 + AluSx SINE Alu 1 295 -17 298 291 64 9 chr11 42842179 42842289 -105941183 - MIR SINE MIR -61 201 86 27 0 0 0 chr11 42842942 42842969 -105940503 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr11 42843097 42843118 -105940354 + AT_rich Low_complexity Low_complexity 1 21 0 1882 137 0 3 chr11 42843933 42844242 -105939230 - AluSq SINE Alu 0 308 1 270 325 102 51 chr11 42844314 42844569 -105938903 + L2 LINE L2 2839 3106 -166 264 59 0 0 chr11 42844813 42844847 -105938625 + (TG)n Simple_repeat Simple_repeat 2 35 0 2398 65 13 0 chr11 42845203 42845509 -105937963 + AluY SINE Alu 1 310 -1 249 179 18 0 chr11 42847186 42847242 -105936230 + MER53 DNA DNA 132 188 -1 453 62 0 0 chr11 42847356 42847421 -105936051 + (CA)n Simple_repeat Simple_repeat 2 66 0 7823 131 48 5 chr11 42850247 42851533 -105931939 - Tigger1 DNA MER2_type 0 2418 1077 43259 44 4 3 chr11 42851534 42857680 -105925792 + L1PA4 LINE L1 1 6152 -3 5939 173 26 6 chr11 42857684 42858754 -105924718 - Tigger1 DNA MER2_type -1326 1092 1 1332 31 0 0 chr11 42859180 42859339 -105924133 + L1PA4 LINE L1 5996 6154 -1 42 89 0 0 chr11 42859933 42860045 -105923427 + AT_rich Low_complexity Low_complexity 1 112 0 2533 46 0 10 chr11 42860122 42860427 -105923045 + AluY SINE Alu 1 302 -9 42 36 0 0 chr11 42861932 42861988 -105921484 + AT_rich Low_complexity Low_complexity 1 56 0 21 0 0 0 chr11 42862133 42862154 -105921318 + AT_rich Low_complexity Low_complexity 1 21 0 229 262 48 24 chr11 42862674 42862758 -105920714 + MIR SINE MIR 147 232 -30 1574 154 33 0 chr11 42863847 42864119 -105919353 - L1PBa LINE L1 -6577 286 6 2336 97 0 3 chr11 42864323 42864634 -105918838 + AluY SINE Alu 1 310 -1 24 32 0 0 chr11 42865469 42865500 -105917972 + AT_rich Low_complexity Low_complexity 1 31 0 303 186 0 0 chr11 42866441 42866538 -105916934 + (TA)n Simple_repeat Simple_repeat 2 98 0 34 0 0 0 chr11 42866693 42866727 -105916745 + AT_rich Low_complexity Low_complexity 1 34 0 320 254 158 18 chr11 42867333 42867447 -105916025 + L2 LINE L2 3183 3312 -1 409 311 88 20 chr11 42867787 42868038 -105915434 + L1M4 LINE L1 2785 3052 -3094 358 336 96 48 chr11 42868101 42868517 -105914955 - L2 LINE L2 -5 3308 2873 2746 3 0 13 chr11 42868572 42868877 -105914595 - AluYa5 SINE Alu -10 301 1 1385 235 97 20 chr11 42868963 42869367 -105914105 - MER70B LTR ERVL -143 435 1 430 327 53 45 chr11 42869369 42869635 -105913837 - L2 LINE L2 -499 2815 2548 460 284 123 50 chr11 42869739 42870081 -105913391 + L1MC/D LINE L1 5406 5772 -2036 313 275 168 23 chr11 42870301 42870432 -105913040 + L2 LINE L2 3161 3310 -3 203 312 92 28 chr11 42870472 42870613 -105912859 + MIR3 SINE MIR 57 206 -2 28 0 0 0 chr11 42870795 42870823 -105912649 + AT_rich Low_complexity Low_complexity 1 28 0 30 83 0 0 chr11 42871496 42871568 -105911904 + AT_rich Low_complexity Low_complexity 1 72 0 337 316 7 45 chr11 42871648 42871699 -105911773 + MLT1I LTR MaLR 58 109 -300 2370 123 11 11 chr11 42871699 42872074 -105911398 + THE1C LTR MaLR 1 375 0 337 316 7 45 chr11 42872074 42872177 -105911295 + MLT1I LTR MaLR 109 206 -203 369 296 55 67 chr11 42873663 42873953 -105909519 + MLT1H LTR MaLR 19 341 -188 373 318 53 108 chr11 42874117 42874495 -105908977 + L2 LINE L2 2916 3272 0 22 0 0 0 chr11 42874846 42874868 -105908604 + AT_rich Low_complexity Low_complexity 1 22 0 295 358 78 44 chr11 42876838 42877215 -105906257 - L2 LINE L2 -174 3139 2748 1142 221 9 5 chr11 42877215 42877432 -105906040 + MER20 DNA MER1_type 1 218 -1 295 358 78 44 chr11 42877432 42877524 -105905948 - L2 LINE L2 -565 2748 2661 1839 215 8 0 chr11 42878302 42878655 -105904817 + MLT1A1 LTR MaLR 8 363 -2 238 370 84 25 chr11 42878657 42878776 -105904696 + MIR SINE MIR 26 151 -111 268 266 26 44 chr11 42879378 42879491 -105903981 - MIR SINE MIR -95 167 57 2840 3 0 0 chr11 42880188 42880492 -105902980 - AluYa5 SINE Alu -7 304 1 2007 88 68 24 chr11 42880820 42881114 -105902358 - AluY SINE Alu -4 307 1 6395 173 63 107 chr11 42881435 42883048 -105900424 - MER52A LTR ERV1 0 1755 215 297 224 0 40 chr11 42883538 42883614 -105899858 - MER52A LTR ERV1 -1682 73 1 185 341 66 22 chr11 42883864 42883955 -105899517 + MIR SINE MIR 49 143 -119 360 200 0 0 chr11 42884190 42884265 -105899207 + (TA)n Simple_repeat Simple_repeat 2 76 0 2561 65 0 0 chr11 42884265 42884572 -105898900 - AluY SINE Alu -4 307 1 2084 103 0 7 chr11 42885720 42886002 -105897470 - AluSg1 SINE Alu -29 280 1 222 346 45 26 chr11 42886614 42886770 -105896702 - MIR SINE MIR -95 167 9 183 405 0 9 chr11 42887032 42887148 -105896324 - MIR3 SINE MIR -2 206 92 24 32 0 0 chr11 42887233 42887264 -105896208 + AT_rich Low_complexity Low_complexity 1 31 0 2162 131 33 38 chr11 42887379 42887745 -105895727 + THE1B LTR MaLR 1 364 0 694 310 98 12 chr11 42887889 42888215 -105895257 + MLT1J LTR MaLR 82 435 -76 2079 115 7 10 chr11 42888238 42888534 -105894938 - AluSx SINE Alu -17 295 1 25 0 0 0 chr11 42888824 42888849 -105894623 + AT_rich Low_complexity Low_complexity 1 25 0 181 414 39 8 chr11 42888970 42889098 -105894374 + L2 LINE L2 3125 3256 -16 843 291 52 61 chr11 42889430 42889972 -105893500 + L2 LINE L2 2763 3299 -14 2068 182 14 14 chr11 42890191 42890560 -105892912 + MLT1B LTR MaLR 22 390 0 221 245 19 0 chr11 42890701 42890754 -105892718 + GA-rich Low_complexity Low_complexity 2 55 0 212 239 0 0 chr11 42892504 42892550 -105890922 + GA-rich Low_complexity Low_complexity 3 48 0 337 302 57 31 chr11 42892591 42892750 -105890722 - L3 LINE CR1 -256 1321 1159 357 229 48 84 chr11 42892784 42892950 -105890522 - L2 LINE L2 -37 3276 3117 593 249 81 5 chr11 42893170 42893379 -105890093 + L1MD3 LINE L1 7758 7982 -13 301 246 39 46 chr11 42893434 42893564 -105889908 + L1MC4a LINE L1 5350 5478 -2330 609 300 50 16 chr11 42893746 42894063 -105889409 + L1MC4a LINE L1 5630 5957 -1851 7630 47 10 9 chr11 42894065 42895804 -105887668 - L1PA5 LINE L1 -2 6152 4410 12926 51 3 1 chr11 42895804 42897457 -105886015 + L1PA5 LINE L1 2749 4405 -1741 804 293 153 47 chr11 42897484 42898418 -105885054 + L1MC4a LINE L1 5954 7006 -802 213 94 0 0 chr11 42898418 42898450 -105885022 + (TAA)n Simple_repeat Simple_repeat 1 32 0 804 293 153 47 chr11 42898450 42898531 -105884941 + L1MC4a LINE L1 7006 7077 -731 2100 138 0 3 chr11 42898536 42898847 -105884625 + AluSg SINE Alu 1 310 0 431 305 119 52 chr11 42898947 42899054 -105884418 + L1MC4 LINE L1 7344 7442 -600 1150 195 22 123 chr11 42899054 42899460 -105884012 + MLT1A1 LTR MaLR 1 365 0 431 305 119 52 chr11 42899460 42899757 -105883715 + L1MC4 LINE L1 7442 7718 -324 1742 182 17 0 chr11 42899757 42900108 -105883364 - L1MA6 LINE L1 0 6300 5944 431 305 119 52 chr11 42900108 42900293 -105883179 + L1MC4 LINE L1 7718 7985 -57 2130 140 10 39 chr11 42900293 42900679 -105882793 - THE1C LTR MaLR 0 375 1 431 305 119 52 chr11 42900679 42900742 -105882730 + L1MC4 LINE L1 7985 8042 0 246 288 82 38 chr11 42901753 42901937 -105881535 + MLT1K LTR MaLR 397 588 0 1347 253 43 32 chr11 42903187 42903649 -105879823 + MLT1C LTR MaLR 1 467 0 1556 287 41 14 chr11 42904184 42904620 -105878852 + L1M3a LINE L1 3 450 -5505 243 373 39 13 chr11 42904750 42904903 -105878569 + L1M3a LINE L1 305 461 -5494 * 2460 277 46 23 chr11 42904887 42906284 -105877188 + L1M3a LINE L1 302 1714 -4321 * 19073 151 29 90 chr11 42906265 42910670 -105872802 + L1P LINE L1 6 4141 -2005 856 273 67 64 chr11 42910775 42911120 -105872352 - MLT1E2 LTR MaLR -66 560 215 339 358 133 28 chr11 42911461 42911679 -105871793 + MIR SINE MIR 7 247 -15 2095 125 0 0 chr11 42912411 42912723 -105870749 - AluSg1 SINE Alu 0 312 1 2264 53 7 4 chr11 42912842 42913163 -105870309 + AluY SINE Alu 1 322 0 10462 103 11 3 chr11 42913223 42914777 -105868695 + L1P LINE L1 2953 4518 -1628 1591 200 3 31 chr11 42915152 42915472 -105868000 - AluJb SINE Alu -1 311 1 345 24 0 0 chr11 42915545 42915587 -105867885 + (TG)n Simple_repeat Simple_repeat 2 43 0 2390 89 0 0 chr11 42915743 42916046 -105867426 - AluY SINE Alu -8 303 1 3032 270 58 48 chr11 42916397 42917468 -105866004 + L1M4b LINE L1 11 1092 -5767 226 244 141 67 chr11 42917867 42918002 -105865470 + MIR SINE MIR 91 235 -27 1844 159 17 0 chr11 42918010 42918305 -105865167 - AluJo SINE Alu -10 302 3 5662 113 38 0 chr11 42918410 42919628 -105863844 - L1PA13 LINE L1 -4 6159 4935 192 204 23 0 chr11 42920432 42920476 -105862996 - MIR SINE MIR -56 206 162 2059 117 0 7 chr11 42920595 42920876 -105862596 - AluSc SINE Alu -30 279 1 1505 197 24 38 chr11 42920985 42921355 -105862117 + MLT1A1 LTR MaLR 1 365 0 246 215 124 0 chr11 42925175 42925296 -105858176 - MER113 DNA MER1_type? -326 195 60 184 325 130 0 chr11 42925543 42925620 -105857852 + MIR SINE MIR 119 205 -57 5158 240 93 15 chr11 42925913 42927806 -105855666 - L1M LINE L1 -756 5390 3357 886 250 159 34 chr11 42927806 42928190 -105855282 - MLT1C LTR MaLR -2 465 34 403 196 108 32 chr11 42928198 42928356 -105855116 - L1M4 LINE L1 -5146 1396 1227 2249 269 80 25 chr11 42928425 42929888 -105853584 - L1MEc LINE L1 -2833 4124 2619 1493 264 114 26 chr11 42929899 42930702 -105852770 - L1MEc LINE L1 -4644 2315 1412 2301 100 0 3 chr11 42930702 42931013 -105852459 - AluY SINE Alu -1 310 1 1493 264 114 26 chr11 42931013 42931171 -105852301 - L1MEc LINE L1 -5547 1412 1269 360 188 62 0 chr11 42931182 42931246 -105852226 - L1MEc LINE L1 -5666 1193 1126 254 222 119 82 chr11 42931351 42931594 -105851878 + L1MC5 LINE L1 7401 7652 -309 307 300 22 0 chr11 42931747 42931837 -105851635 - L1MC4 LINE L1 -1337 6705 6614 * 322 274 48 0 chr11 42931785 42931869 -105851603 + L1MC4 LINE L1 6614 6701 -1341 2663 159 8 10 chr11 42931870 42932349 -105851123 + L1PA16 LINE L1 5687 6164 -2 24 67 0 0 chr11 42932442 42932487 -105850985 + AT_rich Low_complexity Low_complexity 1 45 0 25 75 0 0 chr11 42932762 42932815 -105850657 + AT_rich Low_complexity Low_complexity 1 53 0 213 178 0 0 chr11 42932998 42933043 -105850429 + (CATATA)n Simple_repeat Simple_repeat 5 49 0 1868 121 23 0 chr11 42933709 42933965 -105849507 + AluSx SINE Alu 36 297 -15 197 315 155 28 chr11 42934088 42934269 -105849203 + MIR SINE MIR 59 262 0 7366 39 0 0 chr11 42934439 42935932 -105847540 - L1PA4 LINE L1 -1 6154 4660 2928 120 0 17 chr11 42937202 42937661 -105845811 + L1P LINE L1 4326 4776 -1370 1846 139 26 71 chr11 42937650 42938032 -105845440 + THE1C-int LTR MaLR 1216 1580 0 * 1481 119 122 86 chr11 42938032 42938394 -105845078 + THE1C LTR MaLR 1 375 0 1954 273 45 14 chr11 42938542 42939114 -105844358 - MLT1G LTR MaLR 0 590 1 2237 101 0 3 chr11 42939343 42939639 -105843833 - AluSc SINE Alu -14 295 1 427 253 66 66 chr11 42939738 42939920 -105843552 - MIR SINE MIR -3 259 78 2191 118 0 3 chr11 42941721 42942025 -105841447 - AluSg1 SINE Alu -1 308 6 2297 130 23 3 chr11 42942032 42942386 -105841086 - THE1B LTR MaLR -3 361 1 9700 123 6 68 chr11 42942386 42944071 -105839401 - THE1B-int LTR MaLR 0 1580 1 2145 114 99 6 chr11 42944071 42944404 -105839068 - THE1B LTR MaLR 0 364 1 448 320 161 32 chr11 42945076 42945454 -105838018 + LTR33 LTR ERVL 24 450 -71 204 245 0 0 chr11 42945524 42945573 -105837899 - L2 LINE L2 0 3313 3265 832 136 38 0 chr11 42945619 42945751 -105837721 + MER72 LTR ERV1 586 722 0 881 150 6 35 chr11 42946311 42946484 -105836988 + LTR49-int LTR ERV1 1040 1207 -5124 351 257 0 27 chr11 42946486 42946560 -105836912 + tRNA-Glu-GAG tRNA tRNA 3 74 -1 497 186 0 0 chr11 42946775 42946861 -105836611 + LTR49-int LTR ERV1 1410 1495 -4836 3666 229 60 6 chr11 42946872 42946907 -105836565 + L1PA16 LINE L1 4737 4769 -1397 2020 193 68 2 chr11 42946907 42947307 -105836165 - MSTB LTR MaLR 0 426 1 3666 229 60 6 chr11 42947307 42948613 -105834859 + L1PA16 LINE L1 4769 6165 -1 1278 305 145 25 chr11 42948619 42948808 -105834664 - L2 LINE L2 -76 3237 3072 1601 212 42 16 chr11 42948808 42949186 -105834286 + MLT1B LTR MaLR 1 388 -2 1278 305 145 25 chr11 42949186 42949852 -105833620 - L2 LINE L2 -241 3072 2262 1730 199 3 0 chr11 42950504 42950796 -105832676 - AluJb SINE Alu -19 293 1 1869 176 0 0 chr11 42951270 42951565 -105831907 + AluJb SINE Alu 1 295 -17 318 274 132 0 chr11 42951922 42952028 -105831444 - MLT1L LTR MaLR -147 468 349 180 155 0 82 chr11 42952976 42953073 -105830399 + GA-rich Low_complexity Low_complexity 4 92 0 226 271 0 14 chr11 42953126 42953196 -105830276 + GA-rich Low_complexity Low_complexity 1 69 0 1575 172 29 11 chr11 42953251 42953530 -105829942 + AluJo SINE Alu 1 284 -28 369 0 0 0 chr11 42953530 42953571 -105829901 + (CA)n Simple_repeat Simple_repeat 2 42 0 2379 106 19 21 chr11 42953602 42953978 -105829494 + THE1C LTR MaLR 1 375 0 181 368 105 26 chr11 42954252 42954442 -105829030 + MIR SINE MIR 6 210 -52 280 96 173 0 chr11 42954680 42954732 -105828740 - MADE1 DNA Mariner 0 80 20 2380 88 3 0 chr11 42955156 42955453 -105828019 - AluSp SINE Alu -15 298 1 25 51 0 0 chr11 42955657 42955696 -105827776 + AT_rich Low_complexity Low_complexity 1 39 0 6488 82 3 1 chr11 42955803 42957299 -105826173 + L1PA7 LINE L1 4632 6141 -13 22 0 0 0 chr11 42957450 42957472 -105826000 + AT_rich Low_complexity Low_complexity 1 22 0 2138 94 17 7 chr11 42958041 42958338 -105825134 - AluY SINE Alu -11 300 1 40972 46 29 1 chr11 42958643 42964612 -105818860 + L1PA3 LINE L1 1 6136 -19 258 32 0 0 chr11 42964616 42964647 -105818825 + (TAA)n Simple_repeat Simple_repeat 3 33 0 31583 51 1 2 chr11 42965841 42969871 -105813601 + L1P LINE L1 1006 5034 -1112 211 238 12 83 chr11 42970372 42970456 -105813016 + MIR3 SINE MIR 100 177 -31 227 280 131 17 chr11 42970593 42970768 -105812704 - LTR37B LTR ERV1 -268 200 6 313 240 27 0 chr11 42971240 42971315 -105812157 - Charlie1 DNA MER1_type 0 2761 2685 41658 39 26 1 chr11 42971346 42977344 -105806128 + L1PA2 LINE L1 2 6152 -3 261 0 0 0 chr11 42977370 42977399 -105806073 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 2049 241 98 10 chr11 42977406 42978211 -105805261 - Charlie1 DNA MER1_type -100 2661 1786 1097 243 111 20 chr11 42978208 42978550 -105804922 - Charlie1 DNA MER1_type -2388 373 1 * 279 241 35 69 chr11 42978577 42978780 -105804692 - MER31-int LTR ERV1 -3638 1298 1103 748 226 36 87 chr11 42979472 42979830 -105803642 - LTR37B LTR ERV1 -118 350 11 23 54 0 0 chr11 42979849 42979886 -105803586 + AT_rich Low_complexity Low_complexity 1 37 0 26 30 0 0 chr11 42980356 42980389 -105803083 + AT_rich Low_complexity Low_complexity 1 33 0 327 223 0 43 chr11 42982055 42982149 -105801323 + L1M4 LINE L1 4517 4606 -1540 211 100 0 40 chr11 42982156 42982206 -105801266 + (TG)n Simple_repeat Simple_repeat 2 49 0 707 235 91 29 chr11 42982217 42982460 -105801012 + L1ME3A LINE L1 5912 6169 -1 222 200 0 0 chr11 42982710 42982750 -105800722 + (CA)n Simple_repeat Simple_repeat 1 40 0 216 86 0 0 chr11 42982982 42983017 -105800455 + (CAA)n Simple_repeat Simple_repeat 1 35 0 23 0 0 0 chr11 42983268 42983291 -105800181 + AT_rich Low_complexity Low_complexity 1 23 0 1754 181 0 13 chr11 42983540 42983849 -105799623 + AluJb SINE Alu 3 307 -5 2006 150 0 0 chr11 42983859 42984159 -105799313 + AluSc SINE Alu 1 300 -9 24 0 0 0 chr11 42984231 42984255 -105799217 + AT_rich Low_complexity Low_complexity 1 24 0 507 323 82 26 chr11 42984373 42984834 -105798638 + L1ME4a LINE L1 5464 5950 -171 230 227 191 0 chr11 42984924 42985034 -105798438 + L1ME4a LINE L1 5986 6116 -5 7283 42 7 0 chr11 42986324 42987268 -105796204 + L1PA4 LINE L1 5206 6155 0 959 83 0 0 chr11 42988488 42988620 -105794852 + L1MA2 LINE L1 6173 6304 0 339 154 0 90 chr11 42988644 42988722 -105794750 - AluJ/FLAM SINE Alu -223 79 9 21 36 0 0 chr11 42989490 42989518 -105793954 + AT_rich Low_complexity Low_complexity 1 28 0 1534 167 24 3 chr11 42989967 42990286 -105793186 + L1MA4 LINE L1 5970 6303 0 266 235 252 8 chr11 42990303 42990422 -105793050 + MIR SINE MIR 45 192 -70 2060 128 0 10 chr11 42991177 42991489 -105791983 + AluSg1 SINE Alu 1 309 0 214 179 0 54 chr11 42992065 42992121 -105791351 + (TATG)n Simple_repeat Simple_repeat 3 55 0 330 360 22 15 chr11 42992622 42992758 -105790714 - L2 LINE L2 0 3313 3177 875 201 40 48 chr11 42993039 42993342 -105790130 + MER2 DNA MER2_type 2 344 -1 22 35 0 0 chr11 42993395 42993424 -105790048 + AT_rich Low_complexity Low_complexity 1 29 0 6696 62 0 0 chr11 42995606 42996449 -105787023 + L1PA7 LINE L1 5301 6143 -11 651 265 12 19 chr11 42997001 42997163 -105786309 - MER5B DNA MER1_type -17 161 1 2639 14 0 0 chr11 42997260 42997548 -105785924 - AluYa5 SINE Alu 0 311 24 873 334 51 14 chr11 42997959 42998453 -105785019 + HAL1 LINE L1 4 515 -1992 512 335 74 0 chr11 42998524 42998739 -105784733 + MIR SINE MIR 32 262 0 1179 269 82 27 chr11 42998895 42999517 -105783955 + HAL1 LINE L1 718 1373 -1134 728 255 96 102 chr11 42999602 43000144 -105783328 - L1M4 LINE L1 -1213 4933 4395 454 262 28 7 chr11 43000220 43000365 -105783107 - L1MC4 LINE L1 -143 7899 7752 239 179 200 0 chr11 43001680 43001775 -105781697 + MER5C DNA MER1_type 134 247 -77 252 214 0 36 chr11 43002090 43002146 -105781326 + GA-rich Low_complexity Low_complexity 6 59 0 325 247 43 0 chr11 43002149 43002242 -105781230 - LTR67 LTR ERVL -3 554 458 1752 184 0 3 chr11 43003298 43003591 -105779881 + AluJb SINE Alu 6 297 -15 2282 79 0 0 chr11 43004718 43004996 -105778476 - AluY SINE Alu -13 298 21 1148 176 42 139 chr11 43006121 43006454 -105777018 - MLT1A1 LTR MaLR 0 365 75 1925 57 0 0 chr11 43006454 43006706 -105776766 + AluY SINE Alu 56 307 0 1148 176 42 139 chr11 43006706 43006775 -105776697 - MLT1A1 LTR MaLR -290 75 1 289 242 65 57 chr11 43006844 43006968 -105776504 + LTR16A1 LTR ERVL 331 455 -2 1229 318 42 75 chr11 43007425 43007610 -105775862 - L2 LINE L2 -3 3310 3120 2322 82 0 7 chr11 43007610 43007913 -105775559 + AluY SINE Alu 1 301 -10 1229 318 42 75 chr11 43007913 43008067 -105775405 - L2 LINE L2 -193 3120 2962 186 43 0 0 chr11 43008067 43008090 -105775382 + (TA)n Simple_repeat Simple_repeat 1 23 0 1229 318 42 75 chr11 43008090 43008819 -105774653 - L2 LINE L2 -351 2962 2280 2051 137 0 13 chr11 43009036 43009343 -105774129 - AluSx SINE Alu -9 303 1 1159 268 46 37 chr11 43012011 43012421 -105771051 + L2 LINE L2 2269 2682 -632 1214 259 82 32 chr11 43012520 43012992 -105770480 + MLT2B1 LTR ERVL 1 396 -18 2177 131 20 11 chr11 43014728 43015080 -105768392 + THE1A LTR MaLR 1 355 0 11021 108 8 11 chr11 43015080 43015457 -105768015 + THE1A-int LTR MaLR 1 378 -1202 2183 112 0 16 chr11 43015457 43015770 -105767702 + AluY SINE Alu 1 308 -3 11021 108 8 11 chr11 43015770 43016977 -105766495 + THE1A-int LTR MaLR 378 1580 0 2490 99 8 8 chr11 43016977 43017332 -105766140 + THE1A LTR MaLR 1 355 0 414 0 0 0 chr11 43017545 43017591 -105765881 + (CA)n Simple_repeat Simple_repeat 2 47 0 1883 78 0 48 chr11 43018024 43018295 -105765177 + AluY SINE Alu 36 293 -18 2193 68 0 27 chr11 43018529 43018857 -105764615 - AluY SINE Alu 0 320 1 2420 133 3 5 chr11 43019190 43019566 -105763906 + THE1C LTR MaLR 1 375 0 24 0 0 0 chr11 43020495 43020519 -105762953 + AT_rich Low_complexity Low_complexity 1 24 0 2443 54 20 0 chr11 43020741 43021035 -105762437 + AluY SINE Alu 1 300 -11 2084 134 0 0 chr11 43021939 43022229 -105761243 + AluSc SINE Alu 3 292 -17 246 62 0 0 chr11 43023087 43023119 -105760353 + (A)n Simple_repeat Simple_repeat 1 32 0 298 344 49 31 chr11 43023795 43023958 -105759514 - MIR SINE MIR -86 176 11 23 54 0 0 chr11 43024672 43024709 -105758763 + AT_rich Low_complexity Low_complexity 1 37 0 719 337 95 29 chr11 43024782 43024969 -105758503 - L2 LINE L2 0 3313 3140 711 289 67 39 chr11 43024969 43025329 -105758143 + MLT1A2 LTR MaLR 1 370 -4 719 337 95 29 chr11 43025329 43025946 -105757526 - L2 LINE L2 -173 3140 2450 252 354 81 23 chr11 43026062 43026137 -105757335 - L2 LINE L2 -2349 965 896 2274 103 0 6 chr11 43026137 43026448 -105757024 + AluSc SINE Alu 1 309 0 252 354 81 23 chr11 43026448 43026632 -105756840 - L2 LINE L2 -2418 896 691 1752 193 3 0 chr11 43027169 43027464 -105756008 + AluJb SINE Alu 1 296 -16 1205 134 0 6 chr11 43027551 43027730 -105755742 - AluSg/x SINE Alu -2 310 133 880 183 0 0 chr11 43027730 43027867 -105755605 - Charlie3 DNA MER1_type -2528 182 46 296 145 32 32 chr11 43027882 43027944 -105755528 + Tigger1 DNA MER2_type 1510 1571 -847 240 118 0 0 chr11 43028052 43028086 -105755386 + Alu SINE Alu 1 34 -265 1269 139 0 10 chr11 43028186 43028387 -105755085 + AluSg/x SINE Alu 106 304 -8 6937 161 126 15 chr11 43029172 43030531 -105752941 + Tigger1 DNA MER2_type 4 1513 -905 3055 155 23 8 chr11 43030534 43031011 -105752461 - MER1A DNA MER1_type 0 529 46 1794 147 7 0 chr11 43031026 43031318 -105752154 + Tigger1 DNA MER2_type 1510 1803 -615 266 230 242 0 chr11 43081418 43081502 -105701970 + MLT1E LTR MaLR 5 108 -485 648 231 81 49 chr11 43081607 43081863 -105701609 + MLT1E LTR MaLR 115 361 -232 24 32 0 0 chr11 43081966 43081997 -105701475 + AT_rich Low_complexity Low_complexity 1 31 0 2501 67 0 6 chr11 43082371 43082683 -105700789 - AluY SINE Alu -1 310 1 33 0 0 0 chr11 43083714 43083747 -105699725 + AT_rich Low_complexity Low_complexity 1 33 0 182 328 33 0 chr11 43084127 43084188 -105699284 + L2 LINE L2 3244 3306 -7 286 306 208 0 chr11 43084286 43084430 -105699042 + L2 LINE L2 2181 2354 -960 1405 157 54 74 chr11 43084443 43084793 -105698679 + MER61A LTR ERV1 1 343 0 2072 177 53 51 chr11 43084802 43085409 -105698063 + MER61A-int LTR ERV1 12 700 -4517 2270 110 3 3 chr11 43085484 43085794 -105697678 - AluSq SINE Alu -1 312 3 6621 115 63 22 chr11 43085794 43086706 -105696766 + MER61A-int LTR ERV1 1329 2202 -4794 2404 70 3 0 chr11 43086706 43087005 -105696467 + AluY SINE Alu 1 300 -11 6621 115 63 22 chr11 43087005 43087391 -105696081 + MER61A-int LTR ERV1 2202 4949 -2047 467 215 32 0 chr11 43087391 43087484 -105695988 - MLT1B LTR MaLR -33 357 262 2088 113 41 0 chr11 43087485 43087777 -105695695 + AluSg SINE Alu 1 304 -6 17111 90 26 7 chr11 43087822 43090228 -105693244 + MER61A-int LTR ERV1 2767 5217 0 1429 156 50 95 chr11 43090228 43090587 -105692885 + MER61A LTR ERV1 1 343 0 216 356 103 68 chr11 43091057 43091456 -105692016 + L2 LINE L2 2860 3272 0 217 295 103 0 chr11 43092798 43092876 -105690596 + MIR SINE MIR 119 204 -58 524 239 18 0 chr11 43093184 43093293 -105690179 + MER81 DNA DNA 4 114 0 341 265 0 12 chr11 43093314 43093397 -105690075 + L2 LINE L2 3228 3309 -4 21 95 0 0 chr11 43094375 43094438 -105689034 + AT_rich Low_complexity Low_complexity 1 63 0 30 45 0 0 chr11 43095216 43095260 -105688212 + AT_rich Low_complexity Low_complexity 1 44 0 240 86 0 0 chr11 43096572 43096607 -105686865 + (CA)n Simple_repeat Simple_repeat 2 36 0 203 330 60 20 chr11 43098321 43098421 -105685051 + L2 LINE L2 3210 3313 0 186 221 0 88 chr11 43101885 43101953 -105681519 - MIR SINE MIR 0 262 201 722 267 6 0 chr11 43101972 43102137 -105681335 - MER45A DNA AcHobo -7 171 6 313 388 50 0 chr11 43102150 43102310 -105681162 - MIR SINE MIR -76 186 19 874 184 0 47 chr11 43102922 43103112 -105680360 + MIR SINE MIR 82 262 0 51 89 0 0 chr11 43103127 43103262 -105680210 + AT_rich Low_complexity Low_complexity 1 135 0 230 180 50 50 chr11 43103264 43103425 -105680047 + (TATAA)n Simple_repeat Simple_repeat 3 163 0 255 237 0 0 chr11 43103425 43103484 -105679988 - MIR SINE MIR 0 262 204 206 351 138 0 chr11 43103499 43103593 -105679879 - L2 LINE L2 -41 3231 3125 379 355 30 56 chr11 43104468 43104699 -105678773 + L2 LINE L2 3048 3272 0 2451 188 36 39 chr11 43104754 43105314 -105678158 + MER74A LTR ERVL 1 558 0 390 298 107 40 chr11 43105908 43106133 -105677339 + MIR SINE MIR 13 252 -10 874 249 94 49 chr11 43107040 43107340 -105676132 + MER110A LTR ERV1 24 350 -118 1920 79 21 28 chr11 43107340 43107631 -105675841 - L1PA10 LINE L1 0 6168 5880 874 249 94 49 chr11 43107631 43107756 -105675716 + MER110A LTR ERV1 350 468 0 194 203 0 13 chr11 43107972 43108051 -105675421 + (TA)n Simple_repeat Simple_repeat 2 79 0 300 53 0 0 chr11 43108051 43108089 -105675383 + (CA)n Simple_repeat Simple_repeat 2 39 0 917 155 62 6 chr11 43108154 43108315 -105675157 - MER58B DNA MER1_type -1 340 171 4984 130 31 7 chr11 43108332 43109201 -105674271 + L1MA3 LINE L1 4124 5013 -1133 5345 104 40 7 chr11 43109210 43110050 -105673422 + L1MA3 LINE L1 5436 6303 -2 30 27 0 0 chr11 43110051 43110088 -105673384 + AT_rich Low_complexity Low_complexity 1 37 0 295 313 73 0 chr11 43110091 43110187 -105673285 - MER58B DNA MER1_type -236 105 3 1184 265 82 30 chr11 43110189 43110627 -105672845 + MLT1L LTR MaLR 148 608 -7 180 0 0 0 chr11 43110645 43110665 -105672807 + (TC)n Simple_repeat Simple_repeat 1 20 0 285 294 56 82 chr11 43111578 43111881 -105671591 + MLT1J2 LTR MaLR 103 397 -53 21 57 0 0 chr11 43112442 43112477 -105670995 + AT_rich Low_complexity Low_complexity 1 35 0 442 275 63 35 chr11 43113251 43113393 -105670079 - L2 LINE L2 0 3313 3168 24 0 0 0 chr11 43114577 43114601 -105668871 + AT_rich Low_complexity Low_complexity 1 24 0 205 305 158 0 chr11 43115344 43115439 -105668033 - L2 LINE L2 -1 3312 3203 2420 64 3 10 chr11 43115535 43115847 -105667625 - AluY SINE Alu -1 310 1 2136 107 4 0 chr11 43116647 43116928 -105666544 + AluSg SINE Alu 16 297 -13 358 316 163 14 chr11 43117124 43117333 -105666139 + MIR SINE MIR 23 262 0 7381 40 3 0 chr11 43117598 43118691 -105664781 + L1PA4 LINE L1 5060 6155 0 2113 127 3 0 chr11 43118791 43119091 -105664381 - AluSq SINE Alu -12 301 1 503 310 94 33 chr11 43120370 43120583 -105662889 - MIR SINE MIR 0 262 37 1784 151 142 0 chr11 43121775 43122093 -105661379 + THE1B LTR MaLR 1 363 -1 514 222 167 43 chr11 43122363 43122432 -105661040 + MER5A DNA MER1_type 8 67 -122 2414 60 3 7 chr11 43122432 43122734 -105660738 + AluY SINE Alu 1 301 -10 514 222 167 43 chr11 43122734 43122826 -105660646 + MER5A DNA MER1_type 67 189 0 427 320 74 6 chr11 43122843 43123018 -105660454 + MIR SINE MIR 15 201 -61 237 255 21 0 chr11 43123025 43123072 -105660400 - MER20 DNA MER1_type -170 49 2 697 225 46 0 chr11 43123094 43123245 -105660227 + MER20 DNA MER1_type 62 219 0 2302 93 0 3 chr11 43124445 43124746 -105658726 + AluSp SINE Alu 5 304 -9 207 354 53 82 chr11 43125437 43125779 -105657693 + L2 LINE L2 2015 2346 -968 1845 89 4 0 chr11 43125809 43126044 -105657428 + AluSp SINE Alu 58 293 -20 2146 87 0 4 chr11 43126222 43126498 -105656974 - AluSx SINE Alu -8 304 30 869 243 0 0 chr11 43128708 43128881 -105654591 - MER5A DNA MER1_type -3 186 14 2116 165 29 5 chr11 43129098 43129479 -105653993 - MLT1B LTR MaLR 0 390 1 666 207 0 0 chr11 43129813 43129929 -105653543 + FLAM_C SINE Alu 1 116 -17 210 278 0 0 chr11 43130475 43130529 -105652943 + A-rich Low_complexity Low_complexity 1 54 0 291 328 38 23 chr11 43130684 43130815 -105652657 - L2 LINE L2 -4 3268 3136 1568 195 17 23 chr11 43131253 43131555 -105651917 - AluJb SINE Alu -12 300 1 297 313 51 56 chr11 43131745 43131959 -105651513 + MLT1K LTR MaLR 214 426 -162 1542 104 9 13 chr11 43132854 43133085 -105650387 + AluSp SINE Alu 1 230 -83 4981 72 29 4 chr11 43133085 43133768 -105649704 + LTR30 LTR ERV1 23 722 0 702 59 49 0 chr11 43133768 43133870 -105649602 + AluSp SINE Alu 206 312 -1 2015 218 77 8 chr11 43134175 43134243 -105649229 - MER67D LTR ERV1 -3 511 449 294 50 0 0 chr11 43134243 43134283 -105649189 + (GA)n Simple_repeat Simple_repeat 1 40 0 2015 218 77 8 chr11 43134283 43134692 -105648780 - MER67D LTR ERV1 -65 449 1 1621 198 100 28 chr11 43134942 43135371 -105648101 - LTR48 LTR ERV1 -326 461 2 22 0 0 0 chr11 43135507 43135529 -105647943 + AT_rich Low_complexity Low_complexity 1 22 0 203 133 44 0 chr11 43135749 43135794 -105647678 + (TA)n Simple_repeat Simple_repeat 2 48 0 871 305 9 0 chr11 43135848 43136058 -105647414 - MLT1E2 LTR MaLR -93 533 322 237 302 0 0 chr11 43136262 43136348 -105647124 + L1ME LINE L1 5575 5660 -461 2235 224 34 65 chr11 43136399 43137050 -105646422 - LTR8 LTR ERV1 -23 668 38 21 0 0 0 chr11 43137154 43137175 -105646297 + AT_rich Low_complexity Low_complexity 1 21 0 4471 139 19 37 chr11 43139184 43139973 -105643499 + MER4E LTR ERV1 5 779 0 260 200 44 0 chr11 43140017 43140107 -105643365 + (TA)n Simple_repeat Simple_repeat 2 95 0 3449 139 76 37 chr11 43140400 43140513 -105642959 - LTR51 LTR ERV1 0 671 564 1636 144 127 86 chr11 43140513 43140922 -105642550 - MSTA LTR MaLR 0 428 3 3449 139 76 37 chr11 43140922 43141454 -105642018 - LTR51 LTR ERV1 -107 564 1 1438 283 96 28 chr11 43141737 43142563 -105640909 - L2 LINE L2 -1 3312 2376 280 169 345 14 chr11 43142566 43142708 -105640764 + MER53 DNA DNA 1 189 0 6405 67 2 0 chr11 43142748 43143581 -105639891 + L1PA5 LINE L1 1527 2361 -3785 6430 71 28 0 chr11 43143603 43144450 -105639022 - L1PA5 LINE L1 0 6154 5284 23365 55 5 0 chr11 43144450 43148223 -105635249 + L1PA5 LINE L1 2349 6137 -17 359 289 0 0 chr11 43148225 43148315 -105635157 - L1MC4 LINE L1 -1339 6703 6614 12060 140 23 19 chr11 43148491 43150379 -105633093 - Tigger1 DNA MER2_type 0 2418 540 2021 143 0 7 chr11 43150379 43150679 -105632793 - AluSx SINE Alu -14 298 1 12060 140 23 19 chr11 43150679 43150888 -105632584 - Tigger1 DNA MER2_type -1878 540 333 2171 118 0 7 chr11 43150888 43151185 -105632287 - AluSx SINE Alu -17 295 1 12060 140 23 19 chr11 43151185 43151492 -105631980 - Tigger1 DNA MER2_type -2085 333 2 201 171 0 0 chr11 43151690 43151725 -105631747 + T-rich Low_complexity Low_complexity 2 36 0 3014 107 70 16 chr11 43152919 43153404 -105630068 + MER9 LTR ERVK 1 511 0 2335 104 7 0 chr11 43154479 43154787 -105628685 - AluSp SINE Alu -3 310 1 22 0 0 0 chr11 43154889 43154911 -105628561 + AT_rich Low_complexity Low_complexity 1 22 0 413 250 94 0 chr11 43154988 43155148 -105628324 - L1ME LINE L1 -344 5777 5603 1907 135 7 16 chr11 43155148 43155451 -105628021 + AluSx SINE Alu 1 300 -12 401 303 64 52 chr11 43155492 43155743 -105627729 - L2 LINE L2 -18 3295 3042 352 303 45 8 chr11 43155890 43156022 -105627450 - L1ME LINE L1 -2415 5393 5257 238 346 59 52 chr11 43157371 43157524 -105625948 - L2 LINE L2 0 3272 3119 1199 259 122 20 chr11 43158773 43159175 -105624297 - MLT1H LTR MaLR -105 444 2 1485 156 0 8 chr11 43159461 43159704 -105623768 - AluSg/x SINE Alu 0 310 70 2654 155 56 23 chr11 43160579 43161095 -105622377 + L1MA7 LINE L1 5509 6041 -250 586 183 16 0 chr11 43161102 43161228 -105622244 + L1MA7 LINE L1 6159 6286 -5 1634 132 135 36 chr11 43161586 43161919 -105621553 + MLT2D LTR ERVL 1 366 -48 494 200 36 79 chr11 43162044 43162209 -105621263 + MLT1J1 LTR MaLR 44 201 -245 311 261 0 11 chr11 43162292 43162384 -105621088 + MLT1I LTR MaLR 318 408 -1 501 285 43 30 chr11 43162386 43162791 -105620681 - MLT1L LTR MaLR 0 615 137 302 226 95 36 chr11 43164498 43164582 -105618890 + L2 LINE L2 3148 3236 -36 470 320 34 23 chr11 43164647 43164822 -105618650 + MER5A DNA MER1_type 10 186 -3 1614 191 0 14 chr11 43168050 43168332 -105615140 + AluJb SINE Alu 3 280 -32 25 0 0 0 chr11 43168562 43168587 -105614885 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr11 43170995 43171020 -105612452 + AT_rich Low_complexity Low_complexity 1 25 0 191 328 15 0 chr11 43171656 43171723 -105611749 + MIR SINE MIR 121 188 -74 348 287 20 40 chr11 43171894 43171995 -105611477 + MER5A DNA MER1_type 81 179 -10 5190 191 16 11 chr11 43172031 43174019 -105609453 + L1PA16 LINE L1 4145 6143 -23 2225 119 42 14 chr11 43174190 43174544 -105608928 - THE1B LTR MaLR 0 364 1 321 242 69 43 chr11 43174562 43174709 -105608763 - MIR SINE MIR -63 145 4 513 310 84 17 chr11 43175368 43175619 -105607853 - MLT1J LTR MaLR -156 355 51 1949 219 48 42 chr11 43176151 43176653 -105606819 + MLT1D LTR MaLR 1 505 0 222 321 219 0 chr11 43176715 43176852 -105606620 - MIR SINE MIR -43 219 53 1950 149 14 0 chr11 43176923 43177211 -105606261 - AluSx SINE Alu -13 299 8 688 295 43 0 chr11 43177255 43177462 -105606010 - MER58A DNA MER1_type -2 222 7 563 311 87 49 chr11 43177600 43177966 -105605506 + L2 LINE L2 2930 3309 -4 191 322 98 46 chr11 43179220 43179394 -105604078 + L2 LINE L2 2573 2755 -559 867 203 34 123 chr11 43179875 43180284 -105603188 - Charlie4a DNA MER1_type -97 411 37 1388 141 173 12 chr11 43180493 43180748 -105602724 + AluSg SINE Alu 1 296 -4 2145 134 0 0 chr11 43180750 43181055 -105602417 + AluSx SINE Alu 1 305 -7 190 135 0 81 chr11 43181116 43181153 -105602319 - L3b LINE CR1 -128 1455 1422 225 143 0 0 chr11 43181173 43181208 -105602264 - MLT1J LTR MaLR -380 87 53 1071 233 32 18 chr11 43181363 43181681 -105601791 + MLT1C LTR MaLR 136 618 -8 202 154 26 0 chr11 43181747 43181786 -105601686 + T-rich Low_complexity Low_complexity 1 40 0 665 212 120 0 chr11 43181835 43182052 -105601420 + L1M4 LINE L1 828 1070 -5472 2729 89 14 3 chr11 43182083 43182454 -105601018 - THE1C LTR MaLR 0 375 1 21 57 0 0 chr11 43182459 43182494 -105600978 + AT_rich Low_complexity Low_complexity 1 35 0 507 330 76 4 chr11 43182548 43182784 -105600688 + MIR SINE MIR 4 256 -6 422 307 220 8 chr11 43183122 43183363 -105600109 - MLT1I LTR MaLR -20 389 98 1702 181 98 17 chr11 43183441 43183800 -105599672 + MSTD LTR MaLR 1 388 -8 4392 250 17 57 chr11 43183807 43184598 -105598874 + MSTD-int LTR MaLR 1 640 -1011 4250 126 24 0 chr11 43184598 43185227 -105598245 + LTR9B LTR ERV1 1 644 0 4392 250 17 57 chr11 43185227 43185857 -105597615 + MSTD-int LTR MaLR 640 1294 -357 2514 235 96 2 chr11 43186009 43186570 -105596902 + MSTD-int LTR MaLR 1122 1735 0 1647 177 57 46 chr11 43186571 43186960 -105596512 + MSTD LTR MaLR 2 394 -2 646 201 72 127 chr11 43187305 43187749 -105595723 + L1MC4 LINE L1 7356 7942 -53 473 249 173 12 chr11 43189693 43189866 -105593606 + L1MD3 LINE L1 7742 7942 -53 343 361 137 26 chr11 43190266 43191009 -105592463 + L2 LINE L2 2059 2884 -430 1181 299 63 46 chr11 43191046 43191629 -105591843 + MLT1E LTR MaLR 1 593 0 371 336 122 18 chr11 43192698 43192927 -105590545 - MIR SINE MIR 0 262 10 271 398 56 15 chr11 43192933 43193129 -105590343 + MER115 DNA AcHobo 2 205 -488 868 233 67 33 chr11 43193270 43193510 -105589962 + MER115 DNA AcHobo 446 693 0 462 234 40 0 chr11 43194526 43194650 -105588822 - MER58 DNA MER1_type -3 2417 2289 207 162 0 0 chr11 43194824 43194861 -105588611 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 1938 100 3 48 chr11 43195141 43195430 -105588042 - AluY SINE Alu -35 276 1 247 234 31 0 chr11 43195518 43195582 -105587890 + (TTCA)n Simple_repeat Simple_repeat 3 68 0 340 331 87 21 chr11 43196133 43196375 -105587097 - MIR SINE MIR 0 262 5 520 330 11 34 chr11 43197666 43197842 -105585630 + MER5B DNA MER1_type 1 172 -6 2198 115 10 0 chr11 43198791 43199086 -105584386 - AluSc SINE Alu -11 298 1 915 206 64 50 chr11 43199207 43199256 -105584216 - MER58A DNA MER1_type -2197 223 176 2082 135 0 0 chr11 43199256 43199553 -105583919 - AluSx SINE Alu -15 297 1 915 206 64 50 chr11 43199553 43199722 -105583750 - MER58A DNA MER1_type -2244 176 2 465 19 0 0 chr11 43200366 43200420 -105583052 + (TG)n Simple_repeat Simple_repeat 1 54 0 2186 121 7 0 chr11 43201617 43201923 -105581549 + AluSp SINE Alu 4 311 -2 2096 121 7 0 chr11 43201933 43202230 -105581242 + AluSc SINE Alu 1 299 -10 233 288 117 9 chr11 43203027 43203138 -105580334 + MIR SINE MIR 74 196 -66 736 338 94 19 chr11 43203210 43204042 -105579430 + L2 LINE L2 2430 3313 0 194 309 49 12 chr11 43204117 43204198 -105579274 + L2 LINE L2 3186 3269 -3 692 116 66 25 chr11 43205511 43205632 -105577840 - MER20 DNA MER1_type -93 126 1 323 209 47 0 chr11 43206602 43206688 -105576784 + MIR SINE MIR 172 261 -1 25 51 0 0 chr11 43207615 43207654 -105575818 + AT_rich Low_complexity Low_complexity 1 39 0 224 207 17 52 chr11 43208103 43208161 -105575311 + L2 LINE L2 1859 1914 -1400 248 293 113 0 chr11 43208385 43208491 -105574981 + MIR3 SINE MIR 85 202 -6 193 260 20 0 chr11 43208794 43208844 -105574628 - L2 LINE L2 -5 3308 3258 763 169 0 0 chr11 43209047 43209165 -105574307 + FLAM_A SINE Alu 2 119 -14 203 182 227 0 chr11 43210715 43210759 -105572713 + MIR SINE MIR 95 148 -114 903 245 15 10 chr11 43210963 43211167 -105572305 + MER58A DNA MER1_type 5 209 -15 2374 60 0 35 chr11 43211196 43211511 -105571961 - AluY SINE Alu -7 304 1 910 258 148 9 chr11 43211558 43211895 -105571577 + Charlie7 DNA MER1_type 43 426 -2186 268 205 26 51 chr11 43211950 43212028 -105571444 + Charlie7 DNA MER1_type 437 512 -2100 204 40 0 0 chr11 43212099 43212124 -105571348 + (TG)n Simple_repeat Simple_repeat 1 25 0 197 133 0 0 chr11 43212924 43212954 -105570518 - MIR SINE MIR -71 191 162 1286 176 5 18 chr11 43213091 43213312 -105570160 - AluJo SINE Alu -9 303 86 272 309 111 11 chr11 43213391 43213572 -105569900 - MIR SINE MIR -62 200 2 271 273 71 30 chr11 43214910 43215009 -105568463 - L2 LINE L2 -1 3271 3169 193 191 24 0 chr11 43215105 43215147 -105568325 - L2 LINE L2 -96 3217 3175 252 86 0 0 chr11 43215783 43215818 -105567654 + (A)n Simple_repeat Simple_repeat 1 35 0 218 326 30 8 chr11 43216029 43216119 -105567353 + MIR SINE MIR 73 163 -45 707 254 11 11 chr11 43216569 43216750 -105566722 - L2 LINE L2 -2617 697 517 2086 126 17 0 chr11 43216928 43217230 -105566242 + AluSx SINE Alu 1 307 -5 1899 246 87 103 chr11 43217416 43218795 -105564677 + L2 LINE L2 1910 3251 -62 279 232 18 0 chr11 43218802 43218858 -105564614 - MIR SINE MIR -62 146 90 493 261 50 31 chr11 43218992 43219153 -105564319 + MIR SINE MIR 84 247 -15 281 336 16 39 chr11 43219540 43219668 -105563804 - MIR SINE MIR -50 212 88 216 395 90 8 chr11 43219936 43220070 -105563402 + L2 LINE L2 3122 3266 -6 193 202 71 60 chr11 43220995 43221079 -105562393 + L2 LINE L2 337 421 -2893 513 338 80 62 chr11 43222442 43222663 -105560809 - L2 LINE L2 -6 3307 3091 6078 171 13 14 chr11 43222663 43224572 -105558900 - L1PA13 LINE L1 0 6163 4193 513 338 80 62 chr11 43224572 43224814 -105558658 - L2 LINE L2 -222 3091 2836 1211 255 123 12 chr11 43224823 43225254 -105558218 - MLT1D LTR MaLR -1 504 26 338 279 122 69 chr11 43225286 43225399 -105558073 - L2 LINE L2 -510 2804 2698 1341 175 78 30 chr11 43225399 43225668 -105557804 - AluJo SINE Alu -30 282 1 338 279 122 69 chr11 43225668 43225873 -105557599 - L2 LINE L2 -616 2698 2469 14426 193 42 19 chr11 43226876 43233340 -105550132 + L1PB1 LINE L1 6 6859 -8 337 319 36 36 chr11 43234711 43234877 -105548595 + L2 LINE L2 3148 3313 0 2010 114 3 20 chr11 43236397 43236703 -105546769 + AluSx SINE Alu 1 301 -11 819 179 7 0 chr11 43236827 43236967 -105546505 - MLT1A1 LTR MaLR -1 364 224 302 307 51 51 chr11 43237611 43237748 -105545724 - MIR SINE MIR -84 178 42 204 219 0 0 chr11 43238460 43238501 -105544971 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 309 344 6 6 chr11 43289537 43289700 -105493772 - MER103 DNA DNA -2 164 2 1569 126 8 12 chr11 43290039 43290294 -105493178 + L1PA13 LINE L1 5907 6160 -3 254 384 46 20 chr11 43290508 43290659 -105492813 + L2 LINE L2 2587 2741 -573 2534 61 0 3 chr11 43290793 43291105 -105492367 - AluY SINE Alu 0 311 1 539 267 47 41 chr11 43291105 43291184 -105492288 + L2 LINE L2 3108 3185 -128 832 295 67 39 chr11 43291184 43291615 -105491857 - MLT1J1 LTR MaLR -3 443 1 539 267 47 41 chr11 43291615 43291707 -105491765 + L2 LINE L2 3185 3280 -33 667 278 61 0 chr11 43291766 43291964 -105491508 - MIR SINE MIR -21 241 32 195 186 0 0 chr11 43293109 43293152 -105490320 + (TATG)n Simple_repeat Simple_repeat 2 44 0 221 200 0 50 chr11 43293850 43293910 -105489562 + CT-rich Low_complexity Low_complexity 1 57 0 186 276 81 35 chr11 43294527 43294614 -105488858 - L2 LINE L2 -84 3229 3139 22 0 0 0 chr11 43294879 43294901 -105488571 + AT_rich Low_complexity Low_complexity 1 22 0 1402 244 60 22 chr11 43294950 43295400 -105488072 + MLT1C LTR MaLR 1 467 0 2151 183 14 33 chr11 43295521 43295947 -105487525 - MLT2B2 LTR ERVL 0 515 98 2817 116 0 57 chr11 43295947 43296421 -105487051 - L1MA5 LINE L1 -406 5894 5448 2314 123 48 18 chr11 43296421 43296656 -105486816 + L1MA5 LINE L1 5888 6144 -156 2411 108 39 3 chr11 43296656 43297018 -105486454 + THE1C LTR MaLR 1 375 0 2314 123 48 18 chr11 43297018 43297178 -105486294 + L1MA5 LINE L1 6144 6298 -2 737 125 9 0 chr11 43297208 43297320 -105486152 - MLT2B2 LTR ERVL -407 113 1 2313 107 0 0 chr11 43297463 43297772 -105485700 + AluY SINE Alu 1 309 -2 652 316 43 37 chr11 43297788 43298111 -105485361 - L3 LINE CR1 -92 1485 1161 25 0 0 0 chr11 43299416 43299441 -105484031 + AT_rich Low_complexity Low_complexity 1 25 0 224 254 119 0 chr11 43299819 43299878 -105483594 + L2 LINE L2 3204 3269 -3 180 158 0 0 chr11 43299879 43299917 -105483555 + (ACTG)n Simple_repeat Simple_repeat 2 39 0 314 54 0 0 chr11 43299997 43300034 -105483438 + U2 snRNA snRNA 1 37 -151 689 364 62 9 chr11 43300447 43300881 -105482591 + L2 LINE L2 2462 2918 -396 2170 99 44 0 chr11 43300934 43301227 -105482245 - AluSg1 SINE Alu -3 306 1 279 0 0 0 chr11 43301547 43301578 -105481894 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 1526 194 4 18 chr11 43301932 43302211 -105481261 + AluJo SINE Alu 21 295 -17 1170 221 90 15 chr11 43302692 43303082 -105480390 - LTR37A LTR ERV1 0 426 8 483 215 128 51 chr11 43303182 43303377 -105480095 + MER46C DNA MER2_type 99 308 -30 781 212 50 45 chr11 43303391 43303544 -105479928 - MER63A DNA MER1_type -1488 200 44 288 0 0 0 chr11 43303544 43303576 -105479896 + (TG)n Simple_repeat Simple_repeat 2 33 0 781 212 50 45 chr11 43303576 43303620 -105479852 - MER63A DNA MER1_type -1644 44 2 1028 111 0 0 chr11 43304151 43304286 -105479186 - AluSg/x SINE Alu -25 287 153 230 276 122 58 chr11 43304290 43304446 -105479026 - L2 LINE L2 -15 3298 3133 195 299 75 0 chr11 43304501 43304568 -105478904 - L2 LINE L2 -258 3014 2943 768 63 118 16 chr11 43304752 43304879 -105478593 + AluY SINE Alu 171 310 -1 255 333 23 16 chr11 43304929 43305058 -105478414 + L2 LINE L2 3179 3308 -5 289 209 68 107 chr11 43305169 43305346 -105478126 + L2 LINE L2 2805 2974 -340 2030 133 0 13 chr11 43305371 43305672 -105477800 - AluSx SINE Alu -15 297 1 317 325 96 6 chr11 43305744 43305910 -105477562 + L2 LINE L2 3131 3311 -2 893 263 32 88 chr11 43306232 43306642 -105476830 + MLT1J LTR MaLR 92 478 -33 658 318 56 0 chr11 43307217 43307431 -105476041 - MIR SINE MIR -21 241 16 401 280 83 42 chr11 43308435 43308628 -105474844 - MIR SINE MIR -13 249 49 1289 184 78 45 chr11 43308702 43309105 -105474367 + LTR47A LTR ERVL 1 452 0 1122 250 79 21 chr11 43309105 43309433 -105474039 + MLT1A2 LTR MaLR 24 370 -4 1511 201 20 3 chr11 43310133 43310431 -105473041 - AluJo SINE Alu -9 303 1 274 308 14 68 chr11 43310557 43310703 -105472769 + L2 LINE L2 2926 3063 -250 237 196 20 0 chr11 43310714 43310765 -105472707 + (TAA)n Simple_repeat Simple_repeat 1 52 0 612 284 119 0 chr11 43310766 43310967 -105472505 - MIR SINE MIR -18 244 20 314 349 8 23 chr11 43311123 43311252 -105472220 + L2 LINE L2 3185 3311 -2 204 128 0 26 chr11 43311684 43311723 -105471749 + (CA)n Simple_repeat Simple_repeat 2 39 0 247 304 167 39 chr11 43311890 43312094 -105471378 + L2 LINE L2 3080 3309 -4 386 336 74 9 chr11 43312958 43313175 -105470297 - MIR SINE MIR -24 238 8 2111 133 0 0 chr11 43313236 43313530 -105469942 + AluSx SINE Alu 1 294 -18 303 329 68 55 chr11 43314147 43314366 -105469106 + MIR SINE MIR 1 222 -40 417 348 31 25 chr11 43315010 43315211 -105468261 - MIR3 SINE MIR -10 198 5 2333 67 0 3 chr11 43315242 43315558 -105467914 - AluY SINE Alu 0 315 1 280 152 30 0 chr11 43315805 43315871 -105467601 + (TA)n Simple_repeat Simple_repeat 2 69 0 180 0 0 0 chr11 43317491 43317511 -105465961 + (TAA)n Simple_repeat Simple_repeat 2 21 0 243 320 13 0 chr11 43319913 43319991 -105463481 + L1MC/D LINE L1 5485 5563 -558 288 303 104 62 chr11 43321170 43321411 -105462061 - MIR SINE MIR 0 262 12 2301 32 0 7 chr11 43321791 43322073 -105461399 - L1PA4 LINE L1 -259 5896 5617 1851 51 51 0 chr11 43322073 43322306 -105461166 + L1PA4 LINE L1 5901 6149 -6 2104 125 3 3 chr11 43322803 43323107 -105460365 + AluSc SINE Alu 4 307 -2 255 189 0 0 chr11 43323462 43323515 -105459957 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 28 0 0 0 chr11 43323622 43323650 -105459822 + AT_rich Low_complexity Low_complexity 1 28 0 233 317 0 0 chr11 43323650 43323710 -105459762 + L2 LINE L2 3213 3272 0 315 259 75 52 chr11 43323775 43323949 -105459523 + L1MC/D LINE L1 5638 5815 -1993 1216 204 12 0 chr11 43323982 43324222 -105459250 - L1PA15 LINE L1 -20 6145 5903 10321 192 1 0 chr11 43324272 43327321 -105456151 + L1PA13 LINE L1 3161 6152 -11 5982 122 70 149 chr11 43327332 43328217 -105455255 - Tigger1 DNA MER2_type -1030 1388 668 2137 109 3 3 chr11 43328217 43328520 -105454952 - AluSp SINE Alu -10 303 1 5982 122 70 149 chr11 43328520 43329140 -105454332 - Tigger1 DNA MER2_type -1750 668 1 201 349 61 23 chr11 43329167 43329299 -105454173 - MIR SINE MIR -105 157 21 21 0 0 0 chr11 43329556 43329577 -105453895 + AT_rich Low_complexity Low_complexity 1 21 0 6562 146 17 22 chr11 43329749 43331989 -105451483 - L1MA3 LINE L1 0 7724 5480 * 19782 172 46 16 chr11 43331967 43332379 -105451093 - L1MA3 LINE L1 -3250 4315 3917 643 131 37 0 chr11 43332379 43332486 -105450986 + HY1 scRNA scRNA 1 111 -1 19782 172 46 16 chr11 43332486 43332899 -105450573 - L1MA3 LINE L1 -3648 3917 3518 787 44 0 26 chr11 43332899 43333013 -105450459 + (TTCC)n Simple_repeat Simple_repeat 2 112 0 19782 172 46 16 chr11 43333013 43333278 -105450194 - L1MA3 LINE L1 -4047 3518 3262 575 0 0 0 chr11 43333278 43333347 -105450125 - L1PA3 LINE L1 -3 6152 6084 19782 172 46 16 chr11 43333347 43334251 -105449221 - L1MA3 LINE L1 -4303 3262 2387 1713 183 14 0 chr11 43334251 43334536 -105448936 + AluSx SINE Alu 1 289 -23 19782 172 46 16 chr11 43334536 43336724 -105446748 - L1MA3 LINE L1 -5178 2387 16 504 32 0 0 chr11 43336751 43336813 -105446659 + (TATAG)n Simple_repeat Simple_repeat 3 64 0 388 301 72 26 chr11 43336815 43336968 -105446504 + MIR SINE MIR 16 175 -87 447 229 25 25 chr11 43336975 43337119 -105446353 + MER63 DNA MER1_type 689 1058 -4 226 277 36 24 chr11 43337124 43337207 -105446265 + MIR SINE MIR 173 256 -6 359 241 193 21 chr11 43337216 43337361 -105446111 - MIR SINE MIR -58 204 35 435 315 51 17 chr11 43337624 43337802 -105445670 - MIR SINE MIR 0 262 79 180 0 0 0 chr11 43338487 43338507 -105444965 + (TC)n Simple_repeat Simple_repeat 1 20 0 2131 128 0 3 chr11 43338718 43339023 -105444449 + AluSc SINE Alu 1 304 -5 613 151 0 67 chr11 43339099 43339218 -105444254 - AluJb SINE Alu -23 289 179 180 355 122 0 chr11 43339941 43340048 -105443424 + L2 LINE L2 2638 2757 -557 941 327 111 6 chr11 43340446 43340942 -105442530 + L1MEc LINE L1 93 640 -5756 8979 162 25 19 chr11 43341059 43342811 -105440661 + L1PA13 LINE L1 3581 5320 -843 1843 150 7 0 chr11 43342811 43343084 -105440388 + AluSx SINE Alu 6 280 -32 195 100 0 0 chr11 43343084 43343114 -105440358 + (CAAT)n Simple_repeat Simple_repeat 4 33 0 8979 162 25 19 chr11 43343114 43343949 -105439523 + L1PA13 LINE L1 5319 6163 0 1319 285 76 52 chr11 43344389 43345533 -105437939 + L1MEc LINE L1 650 1820 -4576 21 36 0 0 chr11 43345598 43345626 -105437846 + AT_rich Low_complexity Low_complexity 1 28 0 352 304 52 0 chr11 43345707 43345822 -105437650 + MIR3 SINE MIR 36 156 -52 273 378 37 24 chr11 43346374 43346538 -105436934 + MIR3 SINE MIR 39 204 -4 229 280 118 11 chr11 43347160 43347253 -105436219 + MIR3 SINE MIR 58 160 -48 342 302 0 10 chr11 43347490 43347586 -105435886 + L2 LINE L2 3178 3272 0 310 338 125 34 chr11 43348028 43348324 -105435148 + L2 LINE L2 2974 3296 -17 417 266 52 13 chr11 43349159 43349313 -105434159 + MIR SINE MIR 28 187 -75 181 295 167 0 chr11 43349440 43349518 -105433954 - L2 LINE L2 -3 3269 3179 2078 101 28 3 chr11 43349718 43350006 -105433466 - AluSp SINE Alu -18 295 1 742 156 32 19 chr11 43350036 43350190 -105433282 - L1MA8 LINE L1 -4 6287 6132 27 0 0 0 chr11 43351214 43351241 -105432231 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr11 43351460 43351481 -105431991 + AT_rich Low_complexity Low_complexity 1 21 0 889 235 5 31 chr11 43352784 43352980 -105430492 - MLT1E2 LTR MaLR -418 208 18 359 311 43 37 chr11 43353442 43353924 -105429548 + L1ME LINE L1 4892 5387 -777 2060 198 14 12 chr11 43353924 43354348 -105429124 + MSTB LTR MaLR 1 425 -1 359 311 43 37 chr11 43354348 43354537 -105428935 + L1ME LINE L1 5387 5573 -591 343 345 0 18 chr11 43354675 43354785 -105428687 - L2 LINE L2 0 3272 3165 320 312 11 11 chr11 43355228 43355321 -105428151 - MIR3 SINE MIR -38 170 78 411 330 53 9 chr11 43356165 43356392 -105427080 + MIR SINE MIR 1 237 -25 324 102 0 0 chr11 43357079 43357128 -105426344 + (TG)n Simple_repeat Simple_repeat 2 50 0 456 19 0 0 chr11 43358470 43358523 -105424949 + (CA)n Simple_repeat Simple_repeat 2 54 0 185 337 126 11 chr11 43358755 43358850 -105424622 - MIR3 SINE MIR -25 183 78 474 49 0 0 chr11 43360730 43360791 -105422681 + (TG)n Simple_repeat Simple_repeat 1 61 0 22 0 0 0 chr11 43361615 43361637 -105421835 + AT_rich Low_complexity Low_complexity 1 22 0 467 291 141 9 chr11 43361668 43361895 -105421577 + MIR SINE MIR 2 258 -4 352 216 30 90 chr11 43363112 43363246 -105420226 + MLT1K LTR MaLR 408 533 -55 494 304 118 10 chr11 43363609 43363813 -105419659 - MIR SINE MIR -18 244 19 205 243 0 0 chr11 43363863 43363900 -105419572 + L2 LINE L2 3218 3254 -18 235 317 0 49 chr11 43365020 43365143 -105418329 + GA-rich Low_complexity Low_complexity 6 122 0 1953 94 16 8 chr11 43366154 43366430 -105417042 + AluSx SINE Alu 34 312 0 2020 125 7 0 chr11 43367776 43368057 -105415415 - AluSp SINE Alu -30 283 1 428 174 12 23 chr11 43369000 43369086 -105414386 + Tigger7 DNA MER2_type 2403 2487 0 336 279 0 0 chr11 43369101 43369187 -105414285 - MIR SINE MIR 0 262 177 380 326 228 10 chr11 43369909 43370102 -105413370 + MIR SINE MIR 28 262 0 1227 174 185 7 chr11 43370117 43370404 -105413068 - MER44D DNA MER2_type 0 609 2 233 365 138 6 chr11 43370719 43370900 -105412572 - MIR SINE MIR -21 241 37 23 0 0 0 chr11 43371047 43371070 -105412402 + AT_rich Low_complexity Low_complexity 1 23 0 250 351 107 0 chr11 43371107 43371238 -105412234 - MIR3 SINE MIR -7 201 57 348 24 0 0 chr11 43371309 43371350 -105412122 + (TG)n Simple_repeat Simple_repeat 2 42 0 306 254 0 14 chr11 43371506 43371577 -105411895 - L2 LINE L2 -5 3308 3239 374 262 199 31 chr11 43372086 43372277 -105411195 - MIR SINE MIR -12 250 28 226 291 38 25 chr11 43373404 43373483 -105409989 - MIR SINE MIR -108 154 75 233 211 19 19 chr11 43374814 43374866 -105408606 + GA-rich Low_complexity Low_complexity 3 54 0 250 244 163 0 chr11 43375103 43375189 -105408283 + MIR3 SINE MIR 109 208 0 240 35 0 0 chr11 43377252 43377281 -105406191 + (CGGGGG)n Simple_repeat Simple_repeat 2 30 0 267 215 0 0 chr11 43377657 43377722 -105405750 + A-rich Low_complexity Low_complexity 1 65 0 201 178 0 44 chr11 43377979 43378024 -105405448 + CT-rich Low_complexity Low_complexity 1 43 0 2291 86 0 16 chr11 43378601 43378916 -105404556 + AluSg SINE Alu 1 310 0 257 299 246 27 chr11 43380358 43380545 -105402927 - MIR SINE MIR -6 256 30 562 282 168 5 chr11 43381752 43381961 -105401511 - MIR SINE MIR -2 260 18 511 284 159 39 chr11 43382285 43382701 -105400771 - MLT1H LTR MaLR 0 549 64 1978 153 30 24 chr11 43382701 43383074 -105400398 - THE1C LTR MaLR 0 375 1 511 284 159 39 chr11 43383074 43383146 -105400326 - MLT1H LTR MaLR -485 64 2 201 293 35 0 chr11 43383735 43383793 -105399679 + L2 LINE L2 3254 3313 0 2030 168 75 0 chr11 43383972 43384370 -105399102 - MSTA LTR MaLR 0 428 1 781 277 58 30 chr11 43384598 43384860 -105398612 + MER2 DNA MER2_type 1 275 -70 756 218 26 13 chr11 43384860 43385016 -105398456 - FRAM SINE Alu -8 158 1 781 277 58 30 chr11 43385016 43385082 -105398390 + MER2 DNA MER2_type 275 338 -7 211 200 0 0 chr11 43387343 43387383 -105396089 + (TG)n Simple_repeat Simple_repeat 1 40 0 369 269 29 0 chr11 43387418 43387522 -105395950 + L3 LINE CR1 1363 1469 -108 22 94 0 0 chr11 43387685 43387749 -105395723 + AT_rich Low_complexity Low_complexity 1 64 0 353 298 221 34 chr11 43388682 43388791 -105394681 + L2 LINE L2 2743 2830 -483 1784 104 22 108 chr11 43388791 43389107 -105394365 - AluYb8 SINE Alu -16 302 14 353 298 221 34 chr11 43389107 43389488 -105393984 + L2 LINE L2 2830 3309 -4 557 320 90 8 chr11 43389716 43389950 -105393522 + MIR SINE MIR 6 258 -4 238 232 58 29 chr11 43390345 43390414 -105393058 + MIR SINE MIR 83 153 -109 301 206 32 0 chr11 43390715 43390778 -105392694 - MIR SINE MIR -12 250 186 312 259 27 54 chr11 43390881 43390993 -105392479 + MIR SINE MIR 67 175 -87 275 65 22 0 chr11 43391042 43391088 -105392384 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 484 147 14 140 chr11 43391111 43391254 -105392218 - MER20 DNA MER1_type -45 174 50 305 291 48 32 chr11 43391606 43391795 -105391677 + L2 LINE L2 3114 3305 -8 940 179 17 0 chr11 43392464 43392637 -105390835 + MLT1D LTR MaLR 21 196 -309 413 318 80 42 chr11 43392713 43392952 -105390520 + MLT1K LTR MaLR 269 516 -72 843 185 0 23 chr11 43392969 43393142 -105390330 - MLT-int LTR MaLR -1461 274 106 * 897 206 21 60 chr11 43393137 43393502 -105389970 - L1MB7 LINE L1 -80 6103 5769 1682 178 21 3 chr11 43393571 43393858 -105389614 - AluJb SINE Alu -16 296 5 215 288 93 51 chr11 43394430 43394548 -105388924 + L2 LINE L2 3145 3267 -5 281 221 29 15 chr11 43394650 43394718 -105388754 - MIR SINE MIR -5 257 189 188 343 60 0 chr11 43395417 43395484 -105387988 + L2 LINE L2 3202 3272 0 2375 100 0 0 chr11 43395720 43396020 -105387452 + AluSc SINE Alu 1 300 -9 244 342 50 25 chr11 43396348 43396468 -105387004 + MIR SINE MIR 36 158 -104 1950 193 25 50 chr11 43397362 43397655 -105385817 + L1MA5A LINE L1 4769 5043 -1103 2309 77 10 29 chr11 43397655 43397968 -105385504 - AluY SINE Alu -4 307 1 1950 193 25 50 chr11 43397968 43398229 -105385243 + L1MA5A LINE L1 5043 5309 -837 * 5177 150 26 10 chr11 43398222 43399238 -105384234 + L1MA5A LINE L1 5263 6295 -2 275 316 101 43 chr11 43399685 43399824 -105383648 - MIR SINE MIR -108 154 8 596 278 19 42 chr11 43401610 43401822 -105381650 - MIR SINE MIR -2 260 54 189 352 99 28 chr11 43401878 43402060 -105381412 + MIR SINE MIR 20 214 -48 543 53 0 0 chr11 43403029 43403104 -105380368 + (TATG)n Simple_repeat Simple_repeat 2 76 0 570 67 0 0 chr11 43403143 43403218 -105380254 + (TCTA)n Simple_repeat Simple_repeat 3 77 0 1143 281 36 64 chr11 43403260 43403559 -105379913 + L2 LINE L2 2827 3108 -205 965 219 0 28 chr11 43403559 43403774 -105379698 - MER3 DNA MER1_type 0 209 1 1143 281 36 64 chr11 43403774 43403975 -105379497 + L2 LINE L2 3108 3313 0 1418 248 30 41 chr11 43404003 43404471 -105379001 + L1MA9 LINE L1 5810 6272 -40 304 263 19 88 chr11 43405140 43405300 -105378172 - L1ME4a LINE L1 -8 6113 5965 1998 117 0 7 chr11 43405313 43405595 -105377877 - AluSx SINE Alu -1 311 32 2027 176 84 31 chr11 43406009 43406463 -105377009 + LTR2B LTR ERV1 13 490 0 209 354 217 0 chr11 43406517 43406692 -105376780 - MIR SINE MIR -36 226 14 300 353 20 50 chr11 43408957 43409158 -105374314 + MIR SINE MIR 20 214 -48 21 0 0 0 chr11 43409759 43409780 -105373692 + AT_rich Low_complexity Low_complexity 1 21 0 2404 74 0 7 chr11 43410070 43410369 -105373103 - AluSx SINE Alu -15 297 1 539 307 27 36 chr11 43410449 43410674 -105372798 - MIR SINE MIR -30 232 10 200 325 70 53 chr11 43410927 43411041 -105372431 - L3b LINE CR1 -243 1340 1225 297 296 78 42 chr11 43411093 43411235 -105372237 + MIR3 SINE MIR 26 172 -36 22 0 0 0 chr11 43412276 43412298 -105371174 + AT_rich Low_complexity Low_complexity 1 22 0 202 297 209 34 chr11 43412374 43412522 -105370950 - MIR SINE MIR -60 202 29 2208 121 0 0 chr11 43413734 43414023 -105369449 - AluSx SINE Alu -23 289 1 262 368 33 53 chr11 43414900 43415237 -105368235 - L2 LINE L2 -800 2514 2185 180 403 56 0 chr11 43415391 43415463 -105368009 + L2 LINE L2 3104 3179 -93 634 221 0 22 chr11 43415536 43415672 -105367800 + FLAM_A SINE Alu 1 133 0 228 231 26 13 chr11 43415841 43415919 -105367553 + (TA)n Simple_repeat Simple_repeat 1 79 0 341 208 160 0 chr11 43415972 43416078 -105367394 - MIR SINE MIR -10 252 130 503 81 0 0 chr11 43416310 43416384 -105367088 - L1PA11 LINE L1 -1 6173 6100 2156 116 3 0 chr11 43416464 43416756 -105366716 - AluSx SINE Alu -19 293 1 373 394 110 13 chr11 43417268 43417686 -105365786 + L2 LINE L2 2594 3053 -260 686 319 28 8 chr11 43418333 43418584 -105364888 - MIR SINE MIR 0 262 7 479 321 132 0 chr11 43418670 43418860 -105364612 - MIR SINE MIR -34 228 14 471 261 50 83 chr11 43418902 43418950 -105364522 - MER20 DNA MER1_type -8 211 163 1658 189 0 7 chr11 43418950 43419236 -105364236 + AluJb SINE Alu 14 297 -15 471 261 50 83 chr11 43419236 43419405 -105364067 - MER20 DNA MER1_type -56 163 1 264 318 45 18 chr11 43419663 43419773 -105363699 + MIR SINE MIR 149 261 -1 208 143 0 0 chr11 43420321 43420356 -105363116 + (TTTTTA)n Simple_repeat Simple_repeat 5 39 0 308 287 83 87 chr11 43420913 43421327 -105362145 + MLT1I LTR MaLR 31 402 -7 257 371 91 17 chr11 43421804 43422036 -105361436 + MIR SINE MIR 8 256 -6 370 165 35 12 chr11 43424373 43424458 -105359014 + MER5A DNA MER1_type 27 113 -76 24 0 0 0 chr11 43425243 43425267 -105358205 + AT_rich Low_complexity Low_complexity 1 24 0 1267 188 4 55 chr11 43425561 43425833 -105357639 + AluJo SINE Alu 26 283 -29 213 39 0 0 chr11 43425836 43425862 -105357610 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 205 317 38 98 chr11 43425868 43426051 -105357421 - MIR3 SINE MIR -14 194 23 * 399 216 60 17 chr11 43425986 43426102 -105357370 + MIR3 SINE MIR 67 187 -21 307 252 31 119 chr11 43427753 43427979 -105355493 - MIR3 SINE MIR -8 254 49 193 241 52 35 chr11 43427978 43428036 -105355436 - L2 LINE L2 0 3313 3255 * 30 27 0 0 chr11 43428069 43428106 -105355366 + AT_rich Low_complexity Low_complexity 1 37 0 1932 138 3 35 chr11 43428138 43428450 -105355022 - AluSx SINE Alu -10 302 1 1141 213 165 51 chr11 43428647 43429200 -105354272 + LTR48B LTR ERV1 1 784 -3 331 333 88 6 chr11 43430123 43430282 -105353190 + MIR SINE MIR 77 248 -14 25 31 0 0 chr11 43430289 43430321 -105353151 + AT_rich Low_complexity Low_complexity 1 32 0 2304 106 0 3 chr11 43430423 43430724 -105352748 - AluSq SINE Alu -13 300 1 21 36 0 0 chr11 43431564 43431592 -105351880 + AT_rich Low_complexity Low_complexity 1 28 0 322 294 91 7 chr11 43431930 43432073 -105351399 - MIR SINE MIR -87 175 21 195 362 40 53 chr11 43432555 43432707 -105350765 + L2 LINE L2 2946 3095 -177 544 225 50 0 chr11 43432778 43432898 -105350574 - MER20 DNA MER1_type -3 216 91 1269 199 115 0 chr11 43432904 43433165 -105350307 + AluJo SINE Alu 6 296 -16 251 216 193 68 chr11 43433166 43433192 -105350280 - MER20 DNA MER1_type -120 99 78 619 129 24 8 chr11 43433192 43433316 -105350156 + L1MA4 LINE L1 6170 6295 -5 251 216 193 68 chr11 43433316 43433377 -105350095 - MER20 DNA MER1_type -141 78 1 2184 103 7 3 chr11 43433506 43433806 -105349666 + AluSq SINE Alu 1 301 -12 183 186 14 29 chr11 43434006 43434076 -105349396 + (TA)n Simple_repeat Simple_repeat 2 70 0 3322 123 15 56 chr11 43434368 43434908 -105348564 + LTR24B LTR ERV1 1 516 -60 2054 130 3 0 chr11 43434908 43435193 -105348279 + AluSx SINE Alu 1 286 -26 3322 123 15 56 chr11 43435193 43435245 -105348227 + LTR24B LTR ERV1 516 569 -7 391 288 34 0 chr11 43436623 43436769 -105346703 + (CA)n Simple_repeat Simple_repeat 2 152 0 183 205 0 0 chr11 43436775 43436814 -105346658 + (CATA)n Simple_repeat Simple_repeat 4 42 0 445 288 50 6 chr11 43437859 43438019 -105345453 + MIR SINE MIR 40 206 -56 496 276 41 18 chr11 43438152 43438322 -105345150 + MIR SINE MIR 40 213 -49 746 311 51 36 chr11 43439102 43439251 -105344221 - L2 LINE L2 0 3313 3168 1544 186 43 17 chr11 43439251 43439552 -105343920 - AluJo SINE Alu -3 309 1 746 311 51 36 chr11 43439552 43439814 -105343658 - L2 LINE L2 -145 3168 2896 227 270 34 45 chr11 43440071 43440160 -105343312 + MIR SINE MIR 80 167 -95 263 343 66 0 chr11 43440742 43440879 -105342593 + MIR SINE MIR 85 230 -32 216 200 0 0 chr11 43441005 43441055 -105342417 + (TAAA)n Simple_repeat Simple_repeat 4 53 0 485 296 87 27 chr11 43441950 43442362 -105341110 + MLT1L LTR MaLR 83 545 -70 567 283 44 17 chr11 43443436 43443616 -105339856 - MIR SINE MIR -60 202 18 5311 24 0 0 chr11 43443629 43444268 -105339204 - L1PA3 LINE L1 -760 5386 4748 6454 20 0 5 chr11 43444268 43445022 -105338450 + L1PA3 LINE L1 5404 6155 0 1569 182 10 32 chr11 43445331 43445639 -105337833 - AluJo SINE Alu -11 301 1 6767 67 3 4 chr11 43446168 43447446 -105336026 + L1PA7 LINE L1 4869 6154 0 203 261 216 45 chr11 43447643 43447819 -105335653 + MIR SINE MIR 3 208 -54 695 200 0 0 chr11 43447990 43448105 -105335367 - FLAM_A SINE Alu -18 115 1 302 222 16 0 chr11 43448543 43448606 -105334866 + MIR SINE MIR 197 260 -2 221 210 0 81 chr11 43448612 43448674 -105334798 - MIR SINE MIR -186 76 20 1752 166 6 16 chr11 43450468 43450782 -105332690 + AluJb SINE Alu 2 312 0 267 224 20 0 chr11 43450793 43450842 -105332630 + AluJ/monomer SINE Alu 4 53 -250 610 164 0 0 chr11 43450843 43450947 -105332525 + AluJb SINE Alu 208 311 -1 326 359 58 6 chr11 43451150 43451306 -105332166 - MIR SINE MIR -77 185 22 249 57 0 0 chr11 43451389 43451424 -105332048 + (CCCA)n Simple_repeat Simple_repeat 3 37 0 2393 72 0 0 chr11 43451809 43452102 -105331370 - AluY SINE Alu -18 293 1 295 289 77 45 chr11 43453187 43453343 -105330129 + MER5B DNA MER1_type 16 176 -2 301 266 147 0 chr11 43453746 43453855 -105329617 - MIR SINE MIR 0 262 138 1922 191 13 18 chr11 43454639 43455031 -105328441 - MLT1B LTR MaLR 0 390 1 36 0 0 0 chr11 43459181 43459217 -105324255 + AT_rich Low_complexity Low_complexity 1 36 0 853 227 11 5 chr11 43459717 43459902 -105323570 + MER5A DNA MER1_type 3 188 -1 247 350 51 8 chr11 43460046 43460163 -105323309 - L2 LINE L2 -212 3060 2939 265 207 81 72 chr11 43460456 43460567 -105322905 + MIR SINE MIR 96 207 -55 2155 67 6 80 chr11 43461870 43462197 -105321275 - AluY SINE Alu -8 303 1 37 23 0 0 chr11 43462207 43462251 -105321221 + AT_rich Low_complexity Low_complexity 1 44 0 4776 172 21 41 chr11 43462264 43462600 -105320872 - L1MA10 LINE L1 0 6334 5993 2512 55 0 0 chr11 43462600 43462908 -105320564 - AluY SINE Alu -3 308 1 4776 172 21 41 chr11 43462908 43463602 -105319870 - L1MA10 LINE L1 -341 5993 5324 1179 185 24 0 chr11 43463603 43463814 -105319658 - AluJo SINE Alu -10 302 87 297 0 0 0 chr11 43463836 43463869 -105319603 + (TTA)n Simple_repeat Simple_repeat 2 34 0 976 218 0 0 chr11 43463869 43464085 -105319387 - L1MA10 LINE L1 -849 5297 5082 453 301 144 22 chr11 43464267 43464496 -105318976 - MIR SINE MIR 0 262 6 1435 134 7 75 chr11 43465343 43465500 -105317972 + L1PA16 LINE L1 5887 6016 -150 2084 106 0 35 chr11 43465500 43465841 -105317631 + AluSc SINE Alu 1 309 0 1435 134 7 75 chr11 43465841 43465975 -105317497 + L1PA16 LINE L1 6016 6158 -8 26 50 0 0 chr11 43465987 43466027 -105317445 + AT_rich Low_complexity Low_complexity 1 40 0 259 365 38 31 chr11 43466249 43466408 -105317064 + MIR SINE MIR 36 195 -67 231 304 108 0 chr11 43469426 43469528 -105313944 - MIR SINE MIR -106 156 44 340 353 38 38 chr11 43470433 43470671 -105312801 - MIR SINE MIR 0 262 25 1889 132 7 0 chr11 43470791 43471078 -105312394 - AluSg SINE Alu 0 310 22 463 359 48 19 chr11 43471339 43471545 -105311927 - MIR SINE MIR -38 224 13 3568 149 17 43 chr11 43471715 43472435 -105311037 + L1MC2 LINE L1 5643 6343 -1 22 35 0 0 chr11 43472435 43472464 -105311008 + AT_rich Low_complexity Low_complexity 1 29 0 188 258 161 0 chr11 43472678 43472740 -105310732 - L2 LINE L2 -12 3301 3230 205 267 0 0 chr11 43475582 43475627 -105307845 - MER5A DNA MER1_type -22 167 123 1874 162 3 0 chr11 43475628 43475912 -105307560 + AluSx SINE Alu 4 288 -24 217 354 12 0 chr11 43475915 43475997 -105307475 - MER5B DNA MER1_type -42 136 54 24 0 0 0 chr11 43477724 43477748 -105305724 + AT_rich Low_complexity Low_complexity 1 24 0 548 309 129 11 chr11 43477748 43478182 -105305290 + L1ME4a LINE L1 5485 5969 -152 277 353 98 0 chr11 43478218 43478391 -105305081 + L2 LINE L2 3113 3302 -11 271 284 85 50 chr11 43478782 43478983 -105304489 - L1ME LINE L1 -297 5824 5617 4693 27 0 0 chr11 43479066 43479615 -105303857 + L1PA3 LINE L1 5606 6154 -1 274 403 12 21 chr11 43479734 43479977 -105303495 + L3 LINE CR1 1168 1408 -169 560 403 28 41 chr11 43480501 43480960 -105302512 + L2 LINE L2 2817 3269 -3 22 0 0 0 chr11 43481078 43481100 -105302372 + AT_rich Low_complexity Low_complexity 1 22 0 252 86 0 0 chr11 43481149 43481184 -105302288 + (TC)n Simple_repeat Simple_repeat 2 36 0 181 233 250 26 chr11 43482691 43482807 -105300665 - MIR SINE MIR -55 207 66 210 293 10 50 chr11 43483026 43483125 -105300347 + MIR3 SINE MIR 113 207 -1 205 293 101 20 chr11 43483657 43483756 -105299716 - MIR3 SINE MIR -1 207 101 573 279 127 22 chr11 43484024 43484300 -105299172 + MLT1H LTR MaLR 218 522 -27 18640 110 9 18 chr11 43484698 43486293 -105297179 + L1PA7 LINE L1 1027 2635 -3519 1919 103 65 14 chr11 43486293 43486584 -105296888 + AluY SINE Alu 1 306 -5 18640 110 9 18 chr11 43486584 43489892 -105293580 + L1PA7 LINE L1 2635 6154 0 938 199 112 0 chr11 43490189 43490385 -105293087 - MER20 DNA MER1_type 0 219 2 271 311 16 82 chr11 43490623 43490806 -105292666 + MLT1J LTR MaLR 291 461 -50 295 388 25 72 chr11 43491019 43491339 -105292133 + L2 LINE L2 2968 3272 0 457 209 95 27 chr11 43491345 43491493 -105291979 + L1ME4a LINE L1 5960 6117 -4 356 198 189 0 chr11 43493431 43493542 -105289930 + MER58 DNA MER1_type 45 176 -2244 4511 161 51 9 chr11 43493542 43494654 -105288818 + L1MA8 LINE L1 4459 5613 -678 675 135 71 0 chr11 43494654 43494793 -105288679 + L1MA8 LINE L1 6139 6289 -2 738 163 8 0 chr11 43494804 43494927 -105288545 + MER58 DNA MER1_type 151 274 -2146 1156 214 30 15 chr11 43494978 43495305 -105288167 - MER33 DNA MER1_type -4 320 1 424 345 46 21 chr11 43495555 43495793 -105287679 - L3 LINE CR1 -492 1085 842 444 297 34 14 chr11 43496650 43496798 -105286674 - MIR SINE MIR -26 236 86 478 363 26 9 chr11 43497485 43497711 -105285761 + MIR SINE MIR 1 230 -32 4156 236 37 9 chr11 43500034 43501044 -105282428 + MER45B DNA AcHobo 2 1039 -1 344 279 48 113 chr11 43501067 43501296 -105282176 - L2 LINE L2 -199 3073 2860 282 345 113 11 chr11 43501407 43501584 -105281888 - MIR SINE MIR -1 261 67 222 340 146 19 chr11 43501614 43501706 -105281766 + L2 LINE L2 3149 3257 -15 186 43 0 0 chr11 43501706 43501729 -105281743 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 329 316 199 0 chr11 43501869 43502040 -105281432 + MIR3 SINE MIR 4 208 0 1792 142 0 60 chr11 43502125 43502456 -105281016 - AluSx SINE Alu -1 311 1 189 147 0 0 chr11 43502496 43502530 -105280942 + (TTCA)n Simple_repeat Simple_repeat 2 35 0 6372 82 5 15 chr11 43502965 43503952 -105279520 + L1PA10 LINE L1 5197 6167 -1 213 298 0 0 chr11 43504619 43504676 -105278796 + (CAT)n Simple_repeat Simple_repeat 3 59 0 1828 209 111 89 chr11 43506538 43506632 -105276840 - MER63C DNA MER1_type -130 930 840 195 69 0 0 chr11 43506632 43506661 -105276811 + (TTAAA)n Simple_repeat Simple_repeat 3 31 0 1828 209 111 89 chr11 43506661 43507046 -105276426 - MER63C DNA MER1_type -220 840 465 2775 16 0 0 chr11 43507046 43507353 -105276119 - AluY SINE Alu -4 307 1 1828 209 111 89 chr11 43507353 43507742 -105275730 - MER63C DNA MER1_type -595 465 11 24 32 0 0 chr11 43508214 43508245 -105275227 + AT_rich Low_complexity Low_complexity 1 31 0 316 331 98 0 chr11 43508253 43508416 -105275056 + L1MC4a LINE L1 5682 5860 -1948 205 294 43 87 chr11 43509625 43509717 -105273755 - L2 LINE L2 0 3272 3185 2250 110 0 0 chr11 43509722 43510022 -105273450 - AluY SINE Alu -11 300 1 1094 289 94 34 chr11 43510024 43510492 -105272980 + L2 LINE L2 2818 3313 0 2050 137 0 13 chr11 43510933 43511232 -105272240 + AluSx SINE Alu 3 297 -15 1886 167 7 7 chr11 43511255 43511549 -105271923 + AluJb SINE Alu 1 294 -18 216 0 0 0 chr11 43511561 43511585 -105271887 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 23 33 0 0 chr11 43511846 43511876 -105271596 + AT_rich Low_complexity Low_complexity 1 30 0 370 288 101 7 chr11 43512028 43512167 -105271305 + MIR3 SINE MIR 51 202 -6 1704 116 0 0 chr11 43512859 43513083 -105270389 - AluSq SINE Alu -89 224 1 2912 15 0 0 chr11 43514367 43514701 -105268771 + L1PA2 LINE L1 5822 6155 0 21 0 0 0 chr11 43514725 43514746 -105268726 + AT_rich Low_complexity Low_complexity 1 21 0 1691 100 129 0 chr11 43514762 43515003 -105268469 + AluSg1 SINE Alu 26 297 -12 280 336 74 32 chr11 43515258 43515475 -105267997 - MIR SINE MIR -31 231 6 256 286 11 79 chr11 43517338 43517516 -105265956 - L2 LINE L2 -1217 2097 1932 198 265 129 45 chr11 43517736 43517868 -105265604 + MIR SINE MIR 119 261 -1 466 312 0 7 chr11 43519155 43519293 -105264179 - L2 LINE L2 -520 2794 2658 22 0 0 0 chr11 43519828 43519850 -105263622 + AT_rich Low_complexity Low_complexity 1 22 0 823 300 40 77 chr11 43520883 43520978 -105262494 + L2 LINE L2 2657 2754 -559 2153 127 0 0 chr11 43520978 43521286 -105262186 - AluSx SINE Alu -4 308 1 2176 116 20 0 chr11 43521291 43521592 -105261880 - AluSc SINE Alu -2 307 1 823 300 40 77 chr11 43521592 43522180 -105261292 + L2 LINE L2 2758 3313 0 952 107 8 0 chr11 43522509 43522640 -105260832 - AluY SINE Alu -179 132 1 254 315 137 30 chr11 43522790 43522850 -105260622 - MIR SINE MIR -5 257 205 2256 116 0 0 chr11 43522850 43523152 -105260320 - AluSg SINE Alu -8 302 1 254 315 137 30 chr11 43523152 43523288 -105260184 - MIR SINE MIR -57 205 40 918 267 0 4 chr11 43523294 43523519 -105259953 + MER58A DNA MER1_type 1 224 0 618 219 8 0 chr11 43523520 43523643 -105259829 + L2 LINE L2 3190 3313 0 186 43 0 0 chr11 43523696 43523719 -105259753 + (T)n Simple_repeat Simple_repeat 1 23 0 221 404 41 20 chr11 43524898 43525044 -105258428 + MIR3 SINE MIR 16 164 -44 649 277 85 21 chr11 43526263 43526498 -105256974 - MIR SINE MIR 0 262 13 207 157 0 0 chr11 43526507 43526558 -105256914 + T-rich Low_complexity Low_complexity 1 51 0 344 0 0 0 chr11 43526565 43526608 -105256864 - L1PA4 LINE L1 -3 6152 6110 188 250 23 0 chr11 43527956 43528000 -105255472 + L3 LINE CR1 565 609 -968 1897 147 29 47 chr11 43528684 43529066 -105254406 - THE1C LTR MaLR 0 375 1 2002 122 31 3 chr11 43529925 43530211 -105253261 - AluSg SINE Alu -16 294 1 6866 62 42 0 chr11 43530364 43531344 -105252128 - L1PA7 LINE L1 -8 6146 5154 203 133 22 0 chr11 43531422 43531467 -105252005 + A-rich Low_complexity Low_complexity 3 48 0 286 299 11 11 chr11 43531594 43531681 -105251791 - MIR3 SINE MIR -36 172 86 26 30 0 0 chr11 43532528 43532561 -105250911 + AT_rich Low_complexity Low_complexity 1 33 0 319 368 27 0 chr11 43532831 43533054 -105250418 + L1M4 LINE L1 3073 3301 -2845 2309 109 0 3 chr11 43533094 43533405 -105250067 - AluSg SINE Alu 0 310 1 378 221 29 0 chr11 43533418 43533522 -105249950 + L1M4 LINE L1 3343 3449 -2697 2076 100 0 27 chr11 43533522 43533822 -105249650 + L1P LINE L1 2 293 -5853 271 43 109 0 chr11 43533810 43533856 -105249616 + L1P LINE L1 966 1016 -5130 * 7566 31 0 0 chr11 43533856 43534909 -105248563 + L1PA4 LINE L1 5097 6149 -6 275 349 68 0 chr11 43534913 43535059 -105248413 + MIR SINE MIR 51 206 -56 1013 208 22 90 chr11 43535069 43535435 -105248037 + L1M4 LINE L1 3439 3779 -2367 879 237 51 0 chr11 43535450 43535686 -105247786 + L1MB7 LINE L1 5921 6168 -16 262 309 83 22 chr11 43538169 43538399 -105245073 + HAL1 LINE L1 1115 1358 -1149 217 191 0 44 chr11 43538529 43538597 -105244875 + GA-rich Low_complexity Low_complexity 2 66 0 216 277 0 0 chr11 43538607 43538654 -105244818 + polypurine Low_complexity Low_complexity 4 50 0 * 221 171 0 0 chr11 43538620 43538655 -105244817 + A-rich Low_complexity Low_complexity 1 35 0 228 67 0 0 chr11 43538817 43538847 -105244625 + (A)n Simple_repeat Simple_repeat 1 30 0 24 0 0 0 chr11 43538947 43538971 -105244501 + AT_rich Low_complexity Low_complexity 1 24 0 538 336 57 9 chr11 43539584 43539813 -105243659 + MLT1J LTR MaLR 5 244 -267 212 250 42 0 chr11 43540693 43540765 -105242707 + (CATA)n Simple_repeat Simple_repeat 2 76 0 217 309 0 0 chr11 43541918 43541973 -105241499 - L2 LINE L2 -17 3296 3242 276 336 106 0 chr11 43542520 43542633 -105240839 + L2 LINE L2 3148 3272 0 716 273 34 19 chr11 43543144 43543353 -105240119 + MIR SINE MIR 38 249 -13 213 147 0 59 chr11 43543476 43543544 -105239928 + (TTATA)n Simple_repeat Simple_repeat 3 66 0 186 43 0 0 chr11 43544309 43544332 -105239140 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1391 226 26 57 chr11 43544582 43545003 -105238469 - MLT2D LTR ERVL -6 408 1 8478 100 3 1 chr11 43545514 43546656 -105236816 + L1P3 LINE L1 8 1152 -5309 212 277 57 63 chr11 43547313 43547472 -105236000 - L2 LINE L2 -8 3305 3148 351 0 0 0 chr11 43548135 43548174 -105235298 + (TG)n Simple_repeat Simple_repeat 1 39 0 330 275 106 0 chr11 43548526 43548668 -105234804 - MER103 DNA DNA 0 166 10 7058 185 34 5 chr11 43548779 43551254 -105232218 + L1PB4 LINE L1 3607 6155 -1 272 385 73 5 chr11 43551323 43551515 -105231957 - MIR SINE MIR -10 252 48 2232 109 7 3 chr11 43552108 43552410 -105231062 - AluSg SINE Alu -7 303 1 2163 144 19 30 chr11 43553578 43553946 -105229526 + THE1B LTR MaLR 1 364 0 879 53 9 0 chr11 43554317 43554430 -105229042 - L1PA6 LINE L1 -7 6147 6034 26 0 0 0 chr11 43554797 43554823 -105228649 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr11 43554981 43555003 -105228469 + AT_rich Low_complexity Low_complexity 1 22 0 250 355 41 0 chr11 43555068 43555189 -105228283 - L2 LINE L2 -6 3307 3182 225 0 0 0 chr11 43556115 43556140 -105227332 + (TAAAAA)n Simple_repeat Simple_repeat 4 28 0 1685 116 35 0 chr11 43556149 43556408 -105227064 + L1PA15 LINE L1 5896 6163 -2 1571 200 17 0 chr11 43556490 43556835 -105226637 + L1MA9 LINE L1 5785 6135 -177 207 245 53 21 chr11 43557677 43557771 -105225701 + MIR SINE MIR 120 216 -46 1793 181 0 7 chr11 43558223 43558533 -105224939 - AluJb SINE Alu -1 311 4 251 294 51 51 chr11 43558543 43558720 -105224752 + L1MCc LINE L1 124 300 -6123 312 281 129 7 chr11 43559493 43559632 -105223840 + L1MC4 LINE L1 6604 6759 -1283 860 295 101 48 chr11 43559662 43560354 -105223118 + L1MC4a LINE L1 5326 6054 -1754 263 261 145 0 chr11 43560718 43560787 -105222685 + L1MD3 LINE L1 6668 6746 -1249 461 283 26 7 chr11 43560805 43560957 -105222515 + L1MC4 LINE L1 6856 7010 -1032 558 284 161 81 chr11 43561181 43561377 -105222095 + L1MC4 LINE L1 7099 7278 -764 3767 94 22 0 chr11 43561377 43561919 -105221553 + L1PA13 LINE L1 5610 6163 0 558 284 161 81 chr11 43561919 43562450 -105221022 + L1MC4 LINE L1 7278 7884 -158 327 163 100 0 chr11 43562958 43563038 -105220434 + MLT1J LTR MaLR 416 503 -8 583 257 12 46 chr11 43563114 43563307 -105220165 + MLT1D LTR MaLR 4 187 -350 240 247 53 106 chr11 43563632 43563802 -105219670 - MIR SINE MIR -30 232 72 213 305 38 57 chr11 43564691 43564796 -105218676 + MIR SINE MIR 3 105 -157 189 362 43 0 chr11 43565041 43565135 -105218337 + L2 LINE L2 2950 3047 -225 313 270 139 43 chr11 43565630 43565745 -105217727 - L2 LINE L2 0 3272 3147 222 217 43 0 chr11 43565833 43565879 -105217593 + L2 LINE L2 3261 3308 -5 1818 158 7 7 chr11 43566756 43567040 -105216432 + AluSq SINE Alu 1 284 -29 2297 245 85 5 chr11 43567076 43567679 -105215793 - MLT1E1 LTR MaLR -3 651 1 251 340 65 35 chr11 43568570 43568770 -105214702 + MLT1K LTR MaLR 198 403 -185 229 267 22 7 chr11 43568770 43568905 -105214567 + (TA)n Simple_repeat Simple_repeat 1 137 0 251 314 29 57 chr11 43569036 43569176 -105214296 + MLT1K LTR MaLR 446 581 -7 859 344 74 0 chr11 43569584 43569936 -105213536 + LTR33 LTR ERVL 2 379 -142 182 320 204 17 chr11 43570602 43570774 -105212698 + MIR SINE MIR 19 222 -40 816 200 12 0 chr11 43571574 43571739 -105211733 - AluSg/x SINE Alu 0 312 146 21 0 0 0 chr11 43571908 43571929 -105211543 + GC_rich Low_complexity Low_complexity 1 21 0 2155 110 13 7 chr11 43572543 43572853 -105210619 - AluSx SINE Alu 0 312 1 756 159 36 0 chr11 43573022 43573160 -105210312 - L1MA9 LINE L1 0 6312 6170 28 0 0 0 chr11 43573231 43573259 -105210213 + AT_rich Low_complexity Low_complexity 1 28 0 2166 98 14 0 chr11 43573851 43574136 -105209336 + AluSq SINE Alu 5 293 -20 261 308 56 56 chr11 43574895 43575038 -105208434 + MIR3 SINE MIR 38 180 -28 248 278 96 17 chr11 43575294 43575409 -105208063 + MIR SINE MIR 89 212 -50 240 219 16 16 chr11 43576333 43576397 -105207075 + (ATG)n Simple_repeat Simple_repeat 2 65 0 277 330 168 11 chr11 43576823 43577002 -105206470 + MIR SINE MIR 26 232 -30 369 0 0 0 chr11 43577002 43577017 -105206455 + (CA)n Simple_repeat Simple_repeat 1 56 0 369 0 0 0 chr11 43577017 43577058 -105206414 + (CA)n Simple_repeat Simple_repeat 2 42 0 22 0 0 0 chr11 43577109 43577131 -105206341 + AT_rich Low_complexity Low_complexity 1 22 0 1962 157 11 14 chr11 43577136 43577492 -105205980 - THE1A LTR MaLR 0 355 1 11456 101 1 8 chr11 43577492 43579082 -105204390 - THE1A-int LTR MaLR 0 1580 1 1999 160 14 6 chr11 43579082 43579432 -105204040 - THE1A LTR MaLR 0 355 3 391 247 12 0 chr11 43580028 43580109 -105203363 + L2 LINE L2 3232 3313 0 207 170 0 0 chr11 43580939 43580986 -105202486 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 368 329 104 26 chr11 43583805 43584235 -105199237 + L1ME LINE L1 5057 5529 -773 1977 129 3 57 chr11 43584461 43584779 -105198693 - AluSx SINE Alu -11 301 1 311 256 207 15 chr11 43585699 43585902 -105197570 + L1ME LINE L1 5541 5782 -339 41 0 0 0 chr11 43586201 43586242 -105197230 + AT_rich Low_complexity Low_complexity 1 41 0 376 119 0 24 chr11 43586878 43586962 -105196510 + (TA)n Simple_repeat Simple_repeat 2 83 0 1067 159 5 15 chr11 43588934 43589129 -105194343 + AluSg/x SINE Alu 120 312 0 237 226 48 48 chr11 43589502 43589564 -105193908 - MLT1F LTR MaLR -480 62 1 2536 68 0 0 chr11 43589691 43590002 -105193470 + AluY SINE Alu 1 311 0 207 329 44 44 chr11 43590051 43590188 -105193284 - L2 LINE L2 -206 3066 2930 279 276 65 24 chr11 43590269 43590392 -105193080 - L2 LINE L2 -533 2781 2654 321 339 91 24 chr11 43590869 43591033 -105192439 + MIR SINE MIR 47 221 -41 576 346 21 4 chr11 43591033 43591267 -105192205 + MIR SINE MIR 2 239 -23 21 0 0 0 chr11 43591343 43591364 -105192108 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr11 43592792 43592822 -105190650 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr11 43592962 43592999 -105190473 + AT_rich Low_complexity Low_complexity 1 37 0 6481 68 24 0 chr11 43594368 43595970 -105187502 + L1PA7 LINE L1 4535 6148 -6 1160 139 19 14 chr11 43596163 43596378 -105187094 - Tigger1 DNA MER2_type -1560 858 643 1047 131 0 0 chr11 43596374 43596534 -105186938 + Tigger1 DNA MER2_type 1509 1668 -750 * 2041 150 18 2 chr11 43596535 43596934 -105186538 + Tigger1 DNA MER2_type 863 1353 -1065 3371 184 46 0 chr11 43596939 43597552 -105185920 - Tigger1 DNA MER2_type -1777 641 1 211 151 0 38 chr11 43598157 43598210 -105185262 + (TTCA)n Simple_repeat Simple_repeat 1 51 0 2179 106 0 0 chr11 43598311 43598636 -105184836 + AluSc SINE Alu 1 325 0 1765 143 0 25 chr11 43598772 43599052 -105184420 - AluSx SINE Alu -39 273 1 246 30 0 0 chr11 43599053 43599086 -105184386 + L1MB3 LINE L1 6043 6075 -108 1126 119 12 6 chr11 43599086 43599254 -105184218 + THE1B LTR MaLR 1 169 -195 485 234 0 0 chr11 43599269 43599376 -105184096 + MER3 DNA MER1_type 62 168 -41 3090 215 44 7 chr11 43599376 43600195 -105183277 - L1MB3 LINE L1 -128 6055 5207 243 171 68 0 chr11 43600246 43600334 -105183138 + (TA)n Simple_repeat Simple_repeat 1 94 0 246 344 0 31 chr11 43601247 43601343 -105182129 + L2 LINE L2 3168 3260 -12 * 345 343 102 31 chr11 43601337 43601757 -105181715 - L2 LINE L2 -1 3312 2863 2211 112 0 0 chr11 43601781 43602076 -105181396 + AluY SINE Alu 1 295 -16 1700 256 64 74 chr11 43602211 43603913 -105179559 + L1ME3A LINE L1 4483 6168 -2 291 359 77 30 chr11 43604064 43604373 -105179099 - L2 LINE L2 -747 2567 2239 2067 118 17 0 chr11 43604373 43604662 -105178810 - AluSp SINE Alu -19 294 1 291 359 77 30 chr11 43604662 43604689 -105178783 - L2 LINE L2 -1075 2239 2215 4496 186 73 25 chr11 43604743 43605933 -105177539 + L1MA10 LINE L1 5086 6304 -30 473 343 22 19 chr11 43605968 43606236 -105177236 - L2 LINE L2 -1152 2162 1894 509 95 0 36 chr11 43606511 43606595 -105176877 + L1PA6 LINE L1 6067 6147 -7 34 24 0 0 chr11 43606821 43606862 -105176610 + AT_rich Low_complexity Low_complexity 1 41 0 251 313 34 41 chr11 43607051 43607198 -105176274 + MIR SINE MIR 117 262 0 298 343 152 14 chr11 43607474 43607684 -105175788 + MIR SINE MIR 17 255 -7 591 191 9 0 chr11 43607750 43607860 -105175612 - L1MC1 LINE L1 -12 6321 6211 21 36 0 0 chr11 43608580 43608608 -105174864 + AT_rich Low_complexity Low_complexity 1 28 0 * 528 365 28 8 chr11 43608588 43608843 -105174629 - MIR SINE MIR 0 262 3 23 0 0 0 chr11 43608994 43609017 -105174455 + AT_rich Low_complexity Low_complexity 1 23 0 1973 131 45 43 chr11 43609382 43609756 -105173716 - THE1C LTR MaLR 0 375 1 352 333 79 21 chr11 43610400 43610589 -105172883 + MIR SINE MIR 23 222 -40 373 302 138 5 chr11 43610664 43610853 -105172619 + MIR SINE MIR 49 262 0 352 242 311 11 chr11 43611043 43611233 -105172239 + MIR SINE MIR 8 254 -8 577 141 0 0 chr11 43611283 43611375 -105172097 - ALR/Alpha Satellite centromeric -23 149 58 290 356 17 0 chr11 43612564 43612679 -105170793 + L2 LINE L2 2728 2844 -470 638 234 23 79 chr11 43612679 43612803 -105170669 + MER5A DNA MER1_type 2 121 -68 2411 92 0 0 chr11 43612803 43613106 -105170366 - AluSc SINE Alu -6 303 1 638 234 23 79 chr11 43613106 43613167 -105170305 + MER5A DNA MER1_type 121 184 -5 893 291 39 70 chr11 43613185 43613667 -105169805 + L2 LINE L2 2846 3312 -1 447 253 129 35 chr11 43613873 43614075 -105169397 - MIR SINE MIR -37 225 5 296 250 25 12 chr11 43614518 43614598 -105168874 + MER5A DNA MER1_type 32 112 -77 597 228 95 13 chr11 43614666 43614824 -105168648 - MER5B DNA MER1_type -7 171 1 6042 46 10 15 chr11 43614875 43615653 -105167819 - L1PA5 LINE L1 -127 6027 5254 21 36 0 0 chr11 43616224 43616252 -105167220 + AT_rich Low_complexity Low_complexity 1 28 0 576 206 0 0 chr11 43617808 43617910 -105165562 - AluJo SINE Alu -24 288 187 * 660 179 0 0 chr11 43617909 43618021 -105165451 - AluJo SINE Alu -200 112 1 200 359 87 34 chr11 43618233 43618439 -105165033 + L2 LINE L2 3055 3271 -1 461 126 29 19 chr11 43618621 43618724 -105164748 + CT-rich Low_complexity Low_complexity 3 106 0 271 242 191 73 chr11 43619050 43619228 -105164244 - L1MEd LINE L1 -5396 723 525 189 370 58 7 chr11 43621617 43621755 -105161717 + L2 LINE L2 2945 3089 -224 231 213 64 0 chr11 43621866 43621913 -105161559 + L2 LINE L2 3258 3307 -6 22 0 0 0 chr11 43622036 43622058 -105161414 + AT_rich Low_complexity Low_complexity 1 22 0 699 35 0 0 chr11 43622672 43622758 -105160714 + (TTCC)n Simple_repeat Simple_repeat 4 89 0 285 302 183 18 chr11 43622977 43623146 -105160326 + MIR SINE MIR 66 262 0 255 294 0 15 chr11 43623164 43623232 -105160240 - MIR SINE MIR -116 146 80 277 291 170 24 chr11 43623373 43623538 -105159934 - MIR SINE MIR -70 192 4 718 304 63 51 chr11 43624485 43624817 -105158655 - L2 LINE L2 -7 3306 2971 961 221 4 33 chr11 43624824 43625231 -105158241 + MLT1B LTR MaLR 12 458 -9 225 255 147 39 chr11 43625234 43625336 -105158136 - L2 LINE L2 -348 2966 2854 231 276 76 38 chr11 43625490 43625595 -105157877 - MIR SINE MIR -82 126 18 335 407 26 5 chr11 43627756 43627945 -105155527 + MIR3 SINE MIR 10 202 -6 321 292 127 91 chr11 43628012 43628372 -105155100 + L2 LINE L2 2906 3283 -30 2164 199 0 14 chr11 43628372 43628790 -105154682 + MLT2D LTR ERVL 3 414 0 321 292 127 91 chr11 43628790 43628823 -105154649 + L2 LINE L2 3283 3313 0 276 319 60 17 chr11 43628844 43628960 -105154512 - MIR3 SINE MIR -76 132 12 2070 136 0 3 chr11 43629553 43629863 -105153609 + AluSx SINE Alu 1 309 -3 780 141 14 0 chr11 43630147 43630289 -105153183 - L1P4 LINE L1 -669 5497 5354 2275 196 33 33 chr11 43630447 43630825 -105152647 - L1 LINE L1 -1388 4758 4378 2454 17 66 0 chr11 43630825 43631112 -105152360 - AluY SINE Alu -5 306 1 2275 196 33 33 chr11 43631112 43631331 -105152141 - L1 LINE L1 -1767 4379 4161 1294 109 0 16 chr11 43631685 43631877 -105151595 + MER30B DNA MER1_type 2 190 0 24 32 0 0 chr11 43632023 43632054 -105151418 + AT_rich Low_complexity Low_complexity 1 31 0 225 303 0 123 chr11 43632951 43633106 -105150366 + MIR SINE MIR 5 140 -122 203 356 148 9 chr11 43633357 43633472 -105150000 + MIR SINE MIR 30 160 -102 13347 163 37 8 chr11 43633860 43636204 -105147268 - Tigger1 DNA MER2_type 0 2418 6 243 0 0 0 chr11 43636307 43636334 -105147138 + (TA)n Simple_repeat Simple_repeat 1 27 0 2329 42 0 0 chr11 43636848 43637131 -105146341 - L1PA5 LINE L1 -11 6143 5861 342 0 0 0 chr11 43637383 43637421 -105146051 + (TA)n Simple_repeat Simple_repeat 2 39 0 4458 97 6 28 chr11 43638502 43638988 -105144484 - L1PA14 LINE L1 -3 6158 5691 1681 175 7 7 chr11 43638988 43639291 -105144181 - AluSx SINE Alu -9 303 1 4458 97 6 28 chr11 43639291 43639507 -105143965 - L1PA14 LINE L1 -470 5691 5472 677 89 10 10 chr11 43639564 43639665 -105143807 - L1PA14 LINE L1 -694 5467 5367 300 70 0 0 chr11 43640233 43640276 -105143196 + (TG)n Simple_repeat Simple_repeat 2 44 0 317 331 15 15 chr11 43640626 43640762 -105142710 + MIR SINE MIR 66 201 -61 371 305 107 15 chr11 43641013 43641144 -105142328 + MIR3 SINE MIR 40 182 -26 2519 69 0 0 chr11 43641215 43641518 -105141954 - AluY SINE Alu -8 303 1 220 308 77 0 chr11 43642293 43642397 -105141075 - MIR SINE MIR -92 170 59 484 290 49 90 chr11 43642507 43642917 -105140555 + LTR16B LTR ERVL 64 456 -8 2673 322 40 31 chr11 43643018 43644367 -105139105 + HERV16 LTR ERVL 37 1397 -3599 469 321 16 16 chr11 43644857 43645050 -105138422 + HERV16 LTR ERVL 4787 4979 -17 473 332 46 40 chr11 43645200 43645549 -105137923 + LTR16B LTR ERVL 97 447 -17 207 0 0 0 chr11 43645893 43645916 -105137556 + (T)n Simple_repeat Simple_repeat 1 23 0 277 321 66 28 chr11 43646444 43646550 -105136922 - MIR SINE MIR -117 145 36 1513 254 54 44 chr11 43646991 43647524 -105135948 + MLT1F1 LTR MaLR 31 567 0 241 265 0 15 chr11 43648495 43648563 -105134909 + (TATATG)n Simple_repeat Simple_repeat 2 68 0 242 309 32 32 chr11 43648581 43648707 -105134765 + MIR SINE MIR 121 246 -16 21 36 0 0 chr11 43648782 43648810 -105134662 + AT_rich Low_complexity Low_complexity 1 28 0 216 226 32 0 chr11 43648986 43649079 -105134393 + (TA)n Simple_repeat Simple_repeat 2 97 0 303 271 90 45 chr11 43649082 43649259 -105134213 + L1ME4a LINE L1 5935 6119 -2 24 32 0 0 chr11 43649871 43649902 -105133570 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr11 43650297 43650319 -105133153 + AT_rich Low_complexity Low_complexity 1 22 0 265 341 7 58 chr11 43650451 43650589 -105132883 - MIR SINE MIR -60 148 18 197 362 19 71 chr11 43652526 43652736 -105130736 + L2 LINE L2 2892 3090 -182 207 323 0 0 chr11 43652813 43652875 -105130597 + L2 LINE L2 3210 3271 -1 269 284 102 40 chr11 43652907 43653083 -105130389 + MIR SINE MIR 76 262 0 838 229 5 10 chr11 43653617 43653822 -105129650 - MER115 DNA AcHobo 0 693 490 356 346 34 6 chr11 43654054 43654233 -105129239 - MER115 DNA AcHobo -502 191 8 394 284 0 11 chr11 43654535 43654630 -105128842 + MER81 DNA DNA 21 114 0 231 410 42 24 chr11 43655867 43656033 -105127439 + L2 LINE L2 3104 3272 0 522 209 36 0 chr11 43656486 43656596 -105126876 + MER94 DNA DNA 1 114 -20 767 201 28 0 chr11 43656676 43656820 -105126652 + MER20B DNA MER1_type 17 164 -55 2412 62 3 0 chr11 43656956 43657248 -105126224 - AluY SINE Alu -2 309 17 315 49 0 0 chr11 43657259 43657300 -105126172 + (T)n Simple_repeat Simple_repeat 1 41 0 26 0 0 0 chr11 43657792 43657818 -105125654 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr11 43657890 43657915 -105125557 + AT_rich Low_complexity Low_complexity 1 25 0 451 270 13 63 chr11 43658399 43658558 -105124914 - MER63A DNA MER1_type 0 210 60 21 36 0 0 chr11 43659307 43659335 -105124137 + AT_rich Low_complexity Low_complexity 1 28 0 2369 69 0 22 chr11 43659852 43660170 -105123302 + AluY SINE Alu 1 311 0 3324 277 43 26 chr11 43662031 43663143 -105120329 + L1MD1 LINE L1 13 1143 -5397 785 258 26 4 chr11 43663169 43663436 -105120036 + L1MD1 LINE L1 5328 5600 -940 3088 203 20 10 chr11 43663440 43664131 -105119341 + L1MD1 LINE L1 5938 6635 -1 208 121 0 0 chr11 43664415 43664448 -105119024 + (CA)n Simple_repeat Simple_repeat 2 34 0 545 243 97 113 chr11 43664458 43665266 -105118206 + LTR50 LTR ERVL 1 795 0 2238 103 0 0 chr11 43665722 43666023 -105117449 - AluY SINE Alu -10 301 1 4885 75 181 4 chr11 43667885 43668669 -105114803 - MER11A LTR ERVK -1 1265 343 528 86 38 19 chr11 43668769 43668874 -105114598 - MER11A LTR ERVK -1159 107 1 1586 158 118 31 chr11 43669151 43669607 -105113865 + LTR54B LTR ERV1 1 496 -2 214 208 19 19 chr11 43670320 43670373 -105113099 + GA-rich Low_complexity Low_complexity 2 54 0 234 219 70 102 chr11 43670515 43670585 -105112887 - MIR SINE MIR -12 250 184 1267 192 69 30 chr11 43670585 43670992 -105112480 + LTR37A LTR ERV1 3 425 -1 234 219 70 102 chr11 43670992 43671049 -105112423 - MIR SINE MIR -78 184 127 236 314 14 0 chr11 43671081 43671151 -105112321 - L2 LINE L2 -13 3259 3189 293 207 98 12 chr11 43671409 43671491 -105111981 - MIR SINE MIR -64 198 110 181 368 23 11 chr11 43671557 43671644 -105111828 - MIR SINE MIR -114 148 61 1469 171 115 9 chr11 43671796 43672135 -105111337 + THE1C LTR MaLR 1 375 0 9607 127 12 30 chr11 43672135 43673738 -105109734 + THE1C-int LTR MaLR 1 1575 -5 1896 148 52 25 chr11 43673742 43674107 -105109365 + THE1C LTR MaLR 1 375 0 1714 143 195 19 chr11 43674735 43675099 -105108373 - MSTA LTR MaLR 0 428 1 212 283 19 38 chr11 43675196 43675302 -105108170 + CT-rich Low_complexity Low_complexity 74 177 0 236 351 42 30 chr11 43676039 43676204 -105107268 - MIR SINE MIR -50 212 46 487 158 21 11 chr11 43676382 43676477 -105106995 + MER4A LTR ERV1 3 98 -566 1463 148 19 78 chr11 43676477 43676842 -105106630 + MER4A LTR ERV1 263 664 0 2512 175 7 13 chr11 43677374 43677834 -105105638 - LTR26B LTR ERV1 0 531 75 6501 186 140 40 chr11 43677834 43679429 -105104043 + MER52A LTR ERV1 1 1755 0 487 128 0 0 chr11 43679429 43679507 -105103965 - LTR26B LTR ERV1 -453 78 1 864 251 81 80 chr11 43680551 43680714 -105102758 + MER20B DNA MER1_type 199 360 -423 7398 34 5 0 chr11 43680714 43681606 -105101866 + L1PA4 LINE L1 5259 6154 -1 864 251 81 80 chr11 43681606 43682008 -105101464 + MER20B DNA MER1_type 360 765 -18 475 288 7 20 chr11 43682603 43682756 -105100716 + LTR52 LTR ERVL 1 151 -270 1755 211 42 26 chr11 43682764 43683219 -105100253 + MLT1C LTR MaLR 6 467 0 766 231 43 21 chr11 43683251 43683485 -105099987 + LTR52 LTR ERVL 169 407 -14 2530 89 47 47 chr11 43683710 43684138 -105099334 + L1MA1 LINE L1 5875 6302 0 196 380 60 27 chr11 43684998 43685182 -105098290 + MIR3 SINE MIR 14 203 -5 346 326 84 31 chr11 43685869 43686130 -105097342 + L2 LINE L2 2682 2956 -358 287 304 58 22 chr11 43686302 43686440 -105097032 + L2 LINE L2 3167 3309 -4 800 285 16 27 chr11 43686444 43686700 -105096772 - MIR SINE MIR 0 262 10 229 301 44 35 chr11 43686698 43686811 -105096661 - MIR3 SINE MIR -85 123 10 * 36 0 0 0 chr11 43687649 43687685 -105095787 + AT_rich Low_complexity Low_complexity 1 36 0 240 167 93 0 chr11 43687842 43687896 -105095576 + MIR3 SINE MIR 125 183 -25 21 36 0 0 chr11 43688630 43688658 -105094814 + AT_rich Low_complexity Low_complexity 1 28 0 423 283 96 28 chr11 43689722 43689899 -105093573 - MIR SINE MIR -71 191 3 2423 116 8 6 chr11 43689947 43690310 -105093162 - THE1B LTR MaLR 0 364 1 1057 305 78 42 chr11 43690459 43691213 -105092259 + L2 LINE L2 2521 3313 0 318 26 0 0 chr11 43691941 43691980 -105091492 + (GA)n Simple_repeat Simple_repeat 2 40 0 2480 28 0 3 chr11 43692883 43693198 -105090274 + AluY SINE Alu 1 314 0 338 353 0 8 chr11 43693950 43694072 -105089400 - MIR SINE MIR -94 168 48 389 260 33 19 chr11 43695397 43695525 -105087947 - MIR SINE MIR -64 144 38 194 324 130 19 chr11 43696101 43696209 -105087263 + L2 LINE L2 3142 3261 -11 234 289 107 33 chr11 43696690 43696746 -105086726 + MIR SINE MIR 25 75 -187 611 37 25 0 chr11 43696746 43696827 -105086645 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 2128 102 0 4 chr11 43696829 43697104 -105086368 - AluSx SINE Alu -32 280 7 234 289 107 33 chr11 43697104 43697165 -105086307 + MIR SINE MIR 75 154 -108 23 0 0 0 chr11 43697220 43697243 -105086229 + AT_rich Low_complexity Low_complexity 1 23 0 1398 219 3 64 chr11 43698008 43698337 -105085135 + AluJo SINE Alu 1 309 -3 2609 39 0 10 chr11 43699049 43699359 -105084113 - AluY SINE Alu -4 307 1 1078 262 57 6 chr11 43700919 43701270 -105082202 + L2 LINE L2 2328 2696 -618 1031 259 57 59 chr11 43701342 43701767 -105081705 + L2 LINE L2 2890 3313 0 1395 167 11 7 chr11 43701982 43702257 -105081215 - AluY SINE Alu -14 297 22 282 73 0 0 chr11 43702274 43702315 -105081157 + (T)n Simple_repeat Simple_repeat 1 41 0 258 296 8 88 chr11 43702947 43703072 -105080400 + L2 LINE L2 3192 3306 -7 1642 176 48 0 chr11 43703200 43703495 -105079977 + AluSx SINE Alu 1 309 -3 189 74 0 0 chr11 43703593 43703620 -105079852 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 475 246 7 18 chr11 43703620 43703796 -105079676 - L1MB7 LINE L1 -9 6157 5993 409 176 0 0 chr11 43703962 43704030 -105079442 - AluSg/x SINE Alu -39 270 203 261 0 0 0 chr11 43704203 43704232 -105079240 + (TG)n Simple_repeat Simple_repeat 1 29 0 1684 145 49 78 chr11 43704268 43704654 -105078818 - THE1C LTR MaLR 0 375 1 215 156 0 22 chr11 43705607 43705652 -105077820 + T-rich Low_complexity Low_complexity 5 48 0 2358 90 0 3 chr11 43705765 43706076 -105077396 + AluSg SINE Alu 1 310 0 2244 100 13 3 chr11 43706657 43706958 -105076514 - AluSq SINE Alu -9 304 1 1376 170 17 7 chr11 43706965 43707253 -105076219 - L1MA4 LINE L1 -2 6298 6008 636 255 7 7 chr11 43707463 43707616 -105075856 + MER45 DNA AcHobo 1415 1567 -14 252 0 0 0 chr11 43708319 43708347 -105075125 + (TA)n Simple_repeat Simple_repeat 2 29 0 625 218 11 75 chr11 43708348 43708536 -105074936 - MER20 DNA MER1_type -43 176 1 2171 126 0 19 chr11 43708791 43709108 -105074364 + AluSx SINE Alu 1 311 -1 42439 38 21 1 chr11 43709614 43715642 -105067830 - L1PA2 LINE L1 -1 6154 5 259 324 93 0 chr11 43715657 43715765 -105067707 - MIR SINE MIR -66 196 79 1170 271 43 6 chr11 43715896 43716221 -105067251 + MER93a LTR ERV1 65 401 -1 773 233 6 45 chr11 43716457 43716633 -105066839 - MER5A DNA MER1_type -19 170 2 223 326 67 11 chr11 43716725 43716863 -105066609 - MIR SINE MIR -62 146 2 231 309 43 14 chr11 43717512 43717651 -105065821 + (CATATA)n Simple_repeat Simple_repeat 3 145 0 306 339 40 24 chr11 43717723 43717847 -105065625 + MIR3 SINE MIR 51 176 -32 23 0 0 0 chr11 43717998 43718021 -105065451 + AT_rich Low_complexity Low_complexity 1 23 0 565 308 14 24 chr11 43718361 43718572 -105064900 - MIR SINE MIR -6 256 48 303 363 137 0 chr11 43718650 43718840 -105064632 - MIR SINE MIR -6 256 41 218 192 19 0 chr11 43719640 43719692 -105063780 + CT-rich Low_complexity Low_complexity 2 54 0 2356 183 2 12 chr11 43720447 43720938 -105062534 - L1MA3 LINE L1 -1 6304 5819 852 153 20 0 chr11 43720939 43721089 -105062383 + L1MA3 LINE L1 5669 5821 -479 246 288 0 0 chr11 43722590 43722649 -105060823 + MIR SINE MIR 202 260 -2 651 315 98 65 chr11 43723097 43723307 -105060165 + L2 LINE L2 2806 3008 -305 1647 171 18 14 chr11 43723307 43723593 -105059879 + AluJo SINE Alu 1 287 -25 651 315 98 65 chr11 43723593 43723874 -105059598 + L2 LINE L2 3008 3313 0 499 359 22 0 chr11 43724350 43724581 -105058891 - MIR SINE MIR -14 248 13 312 339 1 37 chr11 43725553 43725719 -105057753 - MER5A DNA MER1_type -16 164 2 23 0 0 0 chr11 43725942 43725965 -105057507 + AT_rich Low_complexity Low_complexity 1 23 0 2230 109 0 19 chr11 43726048 43726360 -105057112 + AluSc SINE Alu 1 306 -3 203 260 57 24 chr11 43726677 43726800 -105056672 + GA-rich Low_complexity Low_complexity 4 130 0 303 303 106 8 chr11 43726864 43726996 -105056476 - MER69A DNA AcHobo -31 146 2 24 0 0 0 chr11 43728479 43728503 -105054969 + AT_rich Low_complexity Low_complexity 1 24 0 228 317 10 10 chr11 43728544 43728645 -105054827 + GA-rich Low_complexity Low_complexity 2 102 0 902 306 75 65 chr11 43729141 43729791 -105053681 + L1M3d LINE L1 1 657 -5234 619 312 72 8 chr11 43730165 43730540 -105052932 + L1M3d LINE L1 691 1089 -4802 * 2474 242 113 20 chr11 43730533 43731022 -105052450 + L1M4c LINE L1 1260 1702 -4682 3899 179 23 29 chr11 43731022 43731812 -105051660 + LTR1 LTR ERV1 1 785 0 2474 242 113 20 chr11 43731812 43732411 -105051061 + L1M4c LINE L1 1702 2449 -3935 2252 218 31 8 chr11 43732539 43733057 -105050415 + L1MB3 LINE L1 5526 6055 -128 485 234 0 0 chr11 43733057 43733164 -105050308 - MER3 DNA MER1_type -41 168 62 1126 119 12 6 chr11 43733179 43733347 -105050125 - THE1B LTR MaLR -195 169 1 246 30 0 0 chr11 43733347 43733380 -105050092 - L1MB3 LINE L1 -108 6075 6043 1765 143 0 25 chr11 43733381 43733661 -105049811 + AluSx SINE Alu 1 273 -39 2211 98 3 25 chr11 43733804 43734120 -105049352 - AluSc SINE Alu 0 309 1 211 151 0 38 chr11 43734221 43734274 -105049198 + (TGAA)n Simple_repeat Simple_repeat 1 51 0 1226 302 103 30 chr11 43735474 43736116 -105047356 - MER115 DNA AcHobo 0 4031 1 821 311 29 0 chr11 43736122 43736360 -105047112 + MIR SINE MIR 15 259 -3 1996 116 3 11 chr11 43736518 43736826 -105046646 - AluSg SINE Alu 0 306 1 344 256 15 53 chr11 43737185 43737318 -105046154 + L1M4c LINE L1 2690 2817 -3565 2400 77 0 0 chr11 43739838 43740148 -105043324 - AluY SINE Alu -1 310 1 24 0 0 0 chr11 43740316 43740340 -105043132 + AT_rich Low_complexity Low_complexity 1 24 0 371 337 136 61 chr11 43740543 43740732 -105042740 + L2 LINE L2 2823 2997 -316 467 72 0 14 chr11 43740732 43740801 -105042671 + (TG)n Simple_repeat Simple_repeat 2 69 0 371 337 136 61 chr11 43740801 43741068 -105042404 + L2 LINE L2 2997 3313 0 1803 193 5 27 chr11 43741152 43741525 -105041947 - MLT1A1 LTR MaLR 0 365 1 607 320 36 5 chr11 43743870 43744089 -105039383 - MIR SINE MIR -21 241 16 284 302 0 0 chr11 43744202 43744265 -105039207 + MER69 DNA AcHobo 4 66 -2460 328 358 33 70 chr11 43744587 43744830 -105038642 + L2 LINE L2 3033 3266 -6 329 219 16 0 chr11 43745437 43745501 -105037971 - MIR3 SINE MIR 0 208 144 1431 260 70 41 chr11 43746111 43746650 -105036822 + MLT1E LTR MaLR 39 593 0 266 401 13 32 chr11 43746679 43746836 -105036636 + MER5B DNA MER1_type 1 154 -24 434 198 12 0 chr11 43847639 43847720 -104935752 - AluSg/x SINE Alu -19 293 212 1126 101 0 0 chr11 43847720 43847869 -104935603 + AluSg/x SINE Alu 164 312 0 1181 96 0 0 chr11 43848150 43848296 -104935176 + AluSq/x SINE Alu 1 146 -166 1203 169 19 72 chr11 43848396 43848703 -104934769 - MLT1B LTR MaLR -94 296 6 1688 195 16 10 chr11 43849776 43850084 -104933388 - AluJb SINE Alu -2 310 1 228 231 39 77 chr11 43850084 43850214 -104933258 + HAL1 LINE L1 811 935 -1572 833 292 71 26 chr11 43850220 43850600 -104932872 + HAL1 LINE L1 880 1276 -1231 667 154 54 31 chr11 43850663 43850793 -104932679 + FLAM_C SINE Alu 6 138 -5 9076 127 33 2 chr11 43850924 43852290 -104931182 - L1P LINE L1 -3594 2552 1145 9962 54 4 5 chr11 43852481 43853785 -104929687 + L1P LINE L1 3 1305 -4841 7577 32 0 0 chr11 43853886 43854895 -104928577 + L1PA4 LINE L1 5171 6179 0 209 320 164 0 chr11 43855761 43855889 -104927583 + MIR SINE MIR 39 187 -75 293 290 47 28 chr11 43855909 43856016 -104927456 - MER91C DNA MER1_type -31 109 1 210 158 0 0 chr11 43856529 43856567 -104926905 + (TA)n Simple_repeat Simple_repeat 2 39 0 230 273 118 18 chr11 43856858 43856968 -104926504 - MIR3 SINE MIR -81 127 7 21 0 0 0 chr11 43857165 43857186 -104926286 + AT_rich Low_complexity Low_complexity 1 21 0 190 206 27 96 chr11 43857343 43857416 -104926056 - L3 LINE CR1 -5 1572 1505 330 350 32 0 chr11 43857423 43857563 -104925909 + MIR SINE MIR 45 187 -62 303 327 123 39 chr11 43857587 43857847 -104925625 + L2 LINE L2 2990 3271 -42 532 330 40 16 chr11 43858149 43858452 -104925020 - L3 LINE CR1 -80 1497 1188 1395 235 56 124 chr11 43858880 43859086 -104924386 + MLT1E2 LTR MaLR 1 219 -407 1587 215 0 7 chr11 43859086 43859384 -104924088 - AluJo SINE Alu -16 296 1 1395 235 56 124 chr11 43859384 43859786 -104923686 + MLT1E2 LTR MaLR 219 563 -63 915 123 0 0 chr11 43859786 43859932 -104923540 - L1MA4 LINE L1 -12 6288 6143 1395 235 56 124 chr11 43859932 43859985 -104923487 + MLT1E2 LTR MaLR 563 618 -8 2043 132 3 0 chr11 43860899 43861186 -104922286 - AluSx SINE Alu -19 293 6 801 306 56 14 chr11 43861383 43861743 -104921729 + MLT1I LTR MaLR 1 375 -34 378 231 0 0 chr11 43862121 43862212 -104921260 + (TATG)n Simple_repeat Simple_repeat 2 92 0 1280 188 26 16 chr11 43862552 43862856 -104920616 + L1MA4 LINE L1 5988 6294 -6 720 157 27 14 chr11 43862712 43862859 -104920613 + L1MA5 LINE L1 6149 6297 -3 213 39 0 0 chr11 43863190 43863216 -104920256 + (TC)n Simple_repeat Simple_repeat 1 26 0 644 311 16 69 chr11 43863351 43863656 -104919816 + MLT1I LTR MaLR 110 398 -11 218 324 43 36 chr11 43863710 43863849 -104919623 + MIR SINE MIR 11 150 -112 275 338 0 0 chr11 43863852 43863920 -104919552 - L2 LINE L2 -17 3296 3229 305 310 63 19 chr11 43864388 43864546 -104918926 + L1MC/D LINE L1 5325 5489 -2319 407 180 34 0 chr11 43865160 43865249 -104918223 + AluS SINE Alu 1 92 -220 40 21 0 0 chr11 43866181 43866228 -104917244 + AT_rich Low_complexity Low_complexity 1 47 0 226 260 0 0 chr11 43866472 43866522 -104916950 - MIR SINE MIR 0 262 213 27 49 0 0 chr11 43866600 43866641 -104916831 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr11 43867093 43867114 -104916358 + AT_rich Low_complexity Low_complexity 1 21 0 556 176 0 0 chr11 43867235 43867337 -104916135 + L1PB4 LINE L1 6053 6154 -2 1231 41 0 0 chr11 43867537 43867684 -104915788 - AluY SINE Alu 0 311 165 559 327 93 14 chr11 43867919 43868274 -104915198 - LTR33 LTR ERVL -8 513 131 195 42 0 0 chr11 43869589 43869613 -104913859 + (TG)n Simple_repeat Simple_repeat 2 25 0 303 317 98 24 chr11 43870174 43870297 -104913175 - L2 LINE L2 0 3313 3182 227 277 12 48 chr11 43870833 43870916 -104912556 - L2 LINE L2 -76 3237 3158 625 322 140 24 chr11 43872483 43872940 -104910532 + L2 LINE L2 1974 2483 -831 408 269 0 106 chr11 43872929 43873156 -104910316 + L2 LINE L2 3101 3303 -10 * 1882 180 0 6 chr11 43873333 43873660 -104909812 + MER7A DNA MER2_type 2 324 -22 202 263 220 5 chr11 43873760 43873854 -104909618 + MIR SINE MIR 42 154 -68 468 0 0 0 chr11 43873950 43874002 -104909470 + (TA)n Simple_repeat Simple_repeat 1 52 0 618 86 11 0 chr11 43874272 43874365 -104909107 - AluY SINE Alu -11 300 207 432 0 0 0 chr11 43875157 43875205 -104908267 + (CA)n Simple_repeat Simple_repeat 2 49 0 9549 148 32 10 chr11 43875205 43876849 -104906623 + Tigger1 DNA MER2_type 10 1688 -730 1224 118 110 28 chr11 43876850 43877104 -104906368 + L1MA2 LINE L1 6030 6304 0 27 0 0 0 chr11 43877104 43877131 -104906341 + AT_rich Low_complexity Low_complexity 1 27 0 851 174 0 0 chr11 43877132 43877287 -104906185 + Tigger1 DNA MER2_type 1683 1837 -581 3264 143 27 38 chr11 43878923 43879386 -104904086 + Tigger1 DNA MER2_type 1820 2277 -141 2212 99 0 0 chr11 43879386 43879705 -104903767 + AluSx SINE Alu 1 319 0 3264 143 27 38 chr11 43879705 43879842 -104903630 + Tigger1 DNA MER2_type 2277 2414 -4 186 43 0 0 chr11 43879844 43879867 -104903605 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 204 40 0 0 chr11 43879866 43879891 -104903581 + (TG)n Simple_repeat Simple_repeat 2 26 0 243 254 95 16 chr11 43882019 43882082 -104901390 - L2 LINE L2 -4 3268 3201 280 363 22 0 chr11 43882911 43883046 -104900426 - MIR SINE MIR -71 191 54 39102 57 2 0 chr11 43883722 43888653 -104894819 + L1P LINE L1 2 4940 -1206 1169 190 31 27 chr11 43888795 43889053 -104894419 + AluJo SINE Alu 35 293 -19 1083 184 5 49 chr11 43889055 43889278 -104894194 - MER46A DNA MER2_type -22 214 2 534 178 0 0 chr11 43889699 43889800 -104893672 + AluSq/x SINE Alu 11 111 -201 1980 147 11 38 chr11 43890129 43890497 -104892975 - THE1B LTR MaLR -6 358 1 3062 142 8 17 chr11 43890497 43891020 -104892452 - THE1B-int LTR MaLR 0 1580 1063 1626 205 84 15 chr11 43893144 43893548 -104889924 + L1MB7 LINE L1 5560 5991 -193 1004 206 0 0 chr11 43893588 43893787 -104889685 - AluSg/x SINE Alu -9 303 105 881 241 236 21 chr11 43894001 43894387 -104889085 + MLT1H LTR MaLR 37 505 -44 567 289 25 41 chr11 43896259 43896456 -104887016 - MIR SINE MIR -6 256 63 840 297 41 19 chr11 43897435 43897704 -104885768 + LTR33 LTR ERVL 1 275 -246 215 280 53 0 chr11 43898210 43898285 -104885187 + L2 LINE L2 2891 2969 -303 411 289 31 8 chr11 43898405 43898533 -104884939 + L2 LINE L2 3140 3270 -2 231 152 0 0 chr11 43898533 43898579 -104884893 + (TGGA)n Simple_repeat Simple_repeat 1 46 0 238 294 92 9 chr11 43898875 43898984 -104884488 - MIR SINE MIR -11 251 134 186 133 0 0 chr11 43899509 43899539 -104883933 + (TG)n Simple_repeat Simple_repeat 1 30 0 794 193 22 28 chr11 43899736 43899917 -104883555 + MLT1C LTR MaLR 1 180 -287 678 206 28 14 chr11 43899915 43900056 -104883416 + MLT1C LTR MaLR 317 459 -8 * 1303 192 3 85 chr11 43900164 43900502 -104882970 + AluJo SINE Alu 2 314 0 1197 224 46 16 chr11 43900506 43900810 -104882662 - MER4D LTR ERV1 -42 861 549 1505 171 14 45 chr11 43900842 43901134 -104882338 - MER49 LTR ERV1 -640 283 1 258 222 56 48 chr11 43902024 43902150 -104881322 - L1ME LINE L1 -222 5899 5773 22 88 0 0 chr11 43902176 43902233 -104881239 + AT_rich Low_complexity Low_complexity 1 57 0 860 128 21 0 chr11 43902419 43902560 -104880912 - MER41B LTR ERV1 0 635 492 504 302 104 9 chr11 43902702 43902924 -104880548 - MIR SINE MIR -18 244 2 21 0 0 0 chr11 43903436 43903457 -104880015 + AT_rich Low_complexity Low_complexity 1 21 0 503 247 43 21 chr11 43903993 43904179 -104879293 - L1MC5 LINE L1 -44 7917 7728 21 71 0 0 chr11 43904814 43904856 -104878616 + AT_rich Low_complexity Low_complexity 1 42 0 213 39 0 0 chr11 43905925 43905951 -104877521 + (CA)n Simple_repeat Simple_repeat 1 26 0 507 300 185 20 chr11 43905960 43906263 -104877209 - L2 LINE L2 -33 3280 2928 182 324 216 0 chr11 43907751 43907853 -104875619 - L2 LINE L2 -1 3271 3148 529 304 242 22 chr11 43908581 43909201 -104874271 + L2 LINE L2 2546 3313 0 446 341 43 46 chr11 43909620 43909867 -104873605 - MIR SINE MIR -3 259 11 372 276 113 41 chr11 43910274 43910358 -104873114 - MIR SINE MIR -6 256 180 3841 152 24 68 chr11 43910358 43911179 -104872293 - LTR1 LTR ERV1 0 785 1 372 276 113 41 chr11 43911179 43911315 -104872157 - MIR SINE MIR -82 180 20 24 106 0 0 chr11 43912316 43912410 -104871062 + AT_rich Low_complexity Low_complexity 1 94 0 22 80 0 0 chr11 43913076 43913126 -104870346 + AT_rich Low_complexity Low_complexity 1 50 0 2315 111 5 72 chr11 43913126 43913514 -104869958 + THE1B LTR MaLR 1 362 -2 567 58 0 0 chr11 43913516 43913585 -104869887 + THE1B-int LTR MaLR 1 69 -1511 443 319 14 48 chr11 43913685 43913755 -104869717 + LTR33 LTR ERVL 315 386 -135 1975 150 132 8 chr11 43913755 43914134 -104869338 + MSTA LTR MaLR 1 426 -2 443 319 14 48 chr11 43914134 43914270 -104869202 + LTR33 LTR ERVL 386 514 -7 24 0 0 0 chr11 43915525 43915549 -104867923 + AT_rich Low_complexity Low_complexity 1 24 0 266 314 44 7 chr11 43915684 43915821 -104867651 + MER103 DNA DNA 6 147 -19 27 49 0 0 chr11 43915913 43915954 -104867518 + AT_rich Low_complexity Low_complexity 1 41 0 505 229 0 0 chr11 43915957 43916053 -104867419 - U6 snRNA snRNA -11 96 1 298 345 35 30 chr11 43916097 43916300 -104867172 - L3 LINE CR1 -22 1555 1352 2599 38 0 22 chr11 43916301 43916617 -104866855 - AluY SINE Alu -2 309 1 230 366 54 21 chr11 43916749 43916842 -104866630 - MIR3 SINE MIR -31 177 82 375 288 34 34 chr11 43917105 43917251 -104866221 + MIR SINE MIR 53 198 -64 29 28 0 0 chr11 43917253 43917289 -104866183 + AT_rich Low_complexity Low_complexity 1 36 0 385 309 87 19 chr11 43919558 43919765 -104863707 - MLT1J LTR MaLR -290 221 1 480 301 21 38 chr11 43920734 43920920 -104862552 + MIR SINE MIR 5 187 -75 1432 112 35 46 chr11 43921141 43921426 -104862046 + L1MA8 LINE L1 6009 6290 -1 324 0 0 0 chr11 43922339 43922375 -104861097 + (TG)n Simple_repeat Simple_repeat 2 37 0 775 251 27 11 chr11 43922661 43922844 -104860628 + MER20 DNA MER1_type 32 217 -2 375 202 0 0 chr11 43923273 43923357 -104860115 + (TA)n Simple_repeat Simple_repeat 1 84 0 7298 36 3 21 chr11 43923357 43924475 -104858997 - L1PA5 LINE L1 -12 6142 5033 218 384 87 11 chr11 43924673 43924858 -104858614 - L2 LINE L2 -785 2529 2331 1020 196 51 28 chr11 43925689 43926000 -104857472 - MLT1B LTR MaLR 0 390 15 396 263 102 81 chr11 43926066 43926447 -104857025 + L1MEd LINE L1 732 1120 -4999 288 273 81 73 chr11 43926524 43926784 -104856688 + L1MEd LINE L1 1254 1603 -887 235 183 33 0 chr11 43926812 43926872 -104856600 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 188 111 28 0 chr11 43926980 43927016 -104856456 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 891 176 33 0 chr11 43927472 43927625 -104855847 + FRAM SINE Alu 13 170 -6 298 285 93 36 chr11 43927973 43928166 -104855306 - L2 LINE L2 -1293 2021 1818 395 367 115 14 chr11 43928241 43928346 -104855126 - L2 LINE L2 -1479 1835 1742 324 0 0 0 chr11 43928346 43928382 -104855090 + (TG)n Simple_repeat Simple_repeat 2 37 0 395 367 115 14 chr11 43928382 43928701 -104854771 - L2 LINE L2 -1572 1742 1368 23 78 0 0 chr11 43929438 43929489 -104853983 + AT_rich Low_complexity Low_complexity 1 51 0 908 119 0 0 chr11 43929489 43929607 -104853865 - FLAM_C SINE Alu -25 118 1 3957 92 8 28 chr11 43929674 43930292 -104853180 - L1MA2 LINE L1 0 6304 5699 194 182 114 125 chr11 43931581 43931669 -104851803 + L2 LINE L2 3186 3272 0 601 278 23 6 chr11 43932029 43932202 -104851270 - MIR SINE MIR 0 262 87 240 35 0 0 chr11 43932264 43932293 -104851179 + (T)n Simple_repeat Simple_repeat 1 29 0 227 267 67 33 chr11 43932812 43932902 -104850570 - MIR SINE MIR -152 110 18 3260 92 20 14 chr11 43933416 43933906 -104849566 - L1P4 LINE L1 -390 5773 5281 1379 123 5 0 chr11 43933906 43934116 -104849356 + L1PA13 LINE L1 5952 6163 0 364 277 9 27 chr11 43934185 43934297 -104849175 + L2 LINE L2 3204 3313 0 315 49 0 0 chr11 43934535 43934576 -104848896 + (TG)n Simple_repeat Simple_repeat 2 42 0 551 285 67 6 chr11 43934762 43934941 -104848531 + MIR SINE MIR 73 262 0 2474 55 0 13 chr11 43936027 43936334 -104847138 + AluY SINE Alu 1 303 -8 194 350 30 127 chr11 43936845 43937082 -104846390 - L2 LINE L2 -1 3271 3058 250 218 115 0 chr11 43937170 43937248 -104846224 - L1ME LINE L1 -266 5855 5769 434 299 22 0 chr11 43937267 43937401 -104846071 - L1PB4 LINE L1 -24 6132 5996 372 340 78 5 chr11 43937402 43937608 -104845864 - L1ME LINE L1 -341 5780 5560 223 286 8 79 chr11 43937649 43937775 -104845697 + MIR SINE MIR 71 187 -75 300 369 25 19 chr11 43938984 43939144 -104844328 + MIR SINE MIR 14 174 -88 180 284 14 40 chr11 43940705 43940779 -104842693 - MIR SINE MIR -64 198 127 663 316 103 28 chr11 43941433 43941822 -104841650 + MLT1J LTR MaLR 1 418 -93 241 342 72 0 chr11 43941840 43941951 -104841521 - MIR SINE MIR -58 204 86 201 39 0 0 chr11 43942187 43942213 -104841259 + (TCTA)n Simple_repeat Simple_repeat 3 28 0 184 175 53 0 chr11 43942217 43942274 -104841198 + GA-rich Low_complexity Low_complexity 2 61 0 466 339 27 5 chr11 43943002 43943188 -104840284 + MIR SINE MIR 14 203 -59 6760 161 204 30 chr11 43943188 43944683 -104838789 - MER52A LTR ERV1 0 1755 1 2361 319 85 30 chr11 43946174 43947052 -104836420 + L2 LINE L2 1692 2703 -610 2511 61 0 0 chr11 43947052 43947349 -104836123 - AluY SINE Alu -14 297 1 2361 319 85 30 chr11 43947349 43947951 -104835521 + L2 LINE L2 2703 3270 -43 1787 108 4 23 chr11 43947955 43948214 -104835258 + AluSx SINE Alu 59 312 0 253 208 19 0 chr11 43948669 43948722 -104834750 - MER67D LTR ERV1 -29 485 432 2538 198 62 28 chr11 43949685 43950144 -104833328 + L1MB7 LINE L1 5540 6027 -157 2177 131 0 0 chr11 43950144 43950449 -104833023 - AluSx SINE Alu -7 305 1 2538 198 62 28 chr11 43950449 43950605 -104832867 + L1MB7 LINE L1 6027 6176 -8 231 36 0 0 chr11 43950615 43950643 -104832829 + (TA)n Simple_repeat Simple_repeat 2 29 0 319 252 76 42 chr11 43950696 43950815 -104832657 - L1ME4a LINE L1 -244 5877 5755 * 349 217 48 12 chr11 43950812 43950895 -104832577 - L1MC4 LINE L1 -1340 6702 6617 2248 59 0 62 chr11 43950895 43951202 -104832270 - AluY SINE Alu -20 291 4 311 295 174 0 chr11 43952558 43952707 -104830765 - MIR SINE MIR -40 222 48 2520 81 43 124 chr11 43952767 43953250 -104830222 + L1PA11 LINE L1 5728 6171 -3 5543 51 0 1 chr11 43953637 43954325 -104829147 + L1PA5 LINE L1 5468 6154 0 1974 168 0 23 chr11 43954520 43954865 -104828607 + MER1B DNA MER1_type 1 337 0 2117 125 39 30 chr11 43955085 43955446 -104828026 - THE1B LTR MaLR 0 364 1 1396 201 48 68 chr11 43955468 43955865 -104827607 - MLT1B LTR MaLR -1 389 1 478 243 27 0 chr11 43955870 43955981 -104827491 - MLT1B-int LTR MaLR -5 1366 1253 1202 82 0 13 chr11 43955981 43956140 -104827332 - AluSg/x SINE Alu -2 310 154 3320 236 94 34 chr11 43956159 43956445 -104827027 - MLT1B-int LTR MaLR -129 1606 1339 858 176 16 52 chr11 43956445 43956638 -104826834 - L1PA15 LINE L1 -9 6156 5971 3320 236 94 34 chr11 43956638 43957814 -104825658 - MLT1B-int LTR MaLR -396 1339 1 914 209 46 10 chr11 43957814 43958010 -104825462 - MLT1B LTR MaLR 0 390 188 222 118 0 0 chr11 43958025 43958059 -104825413 + (GGGAGA)n Simple_repeat Simple_repeat 4 37 0 544 207 98 23 chr11 43958094 43958268 -104825204 - MLT1B LTR MaLR -203 187 1 459 227 35 57 chr11 43958347 43958488 -104824984 + MER5B DNA MER1_type 39 176 -2 186 271 51 17 chr11 43958726 43958785 -104824687 + MIR SINE MIR 19 79 -183 624 301 71 38 chr11 43959712 43959951 -104823521 + MIR SINE MIR 8 254 -8 749 356 67 27 chr11 43960206 43960925 -104822547 + L2 LINE L2 2565 3312 -1 443 304 164 0 chr11 43961864 43962065 -104821407 - MIR SINE MIR -18 244 11 2361 92 0 0 chr11 43962570 43962865 -104820607 + AluSx SINE Alu 3 297 -15 408 310 82 27 chr11 43963016 43963200 -104820272 + MIR SINE MIR 57 250 -12 405 39 0 0 chr11 43963707 43963758 -104819714 + (TG)n Simple_repeat Simple_repeat 2 52 0 24 0 0 0 chr11 43965115 43965139 -104818333 + AT_rich Low_complexity Low_complexity 1 24 0 260 315 55 55 chr11 43965398 43965598 -104817874 - L2 LINE L2 -22 3291 3092 384 338 38 42 chr11 43965774 43965987 -104817485 - L2 LINE L2 -263 3050 2839 25 31 0 0 chr11 43967553 43967585 -104815887 + AT_rich Low_complexity Low_complexity 1 32 0 201 286 0 0 chr11 43967752 43967794 -104815678 - L2 LINE L2 -18 3254 3213 309 250 0 0 chr11 43968929 43969021 -104814451 + (TCCA)n Simple_repeat Simple_repeat 4 95 0 243 352 93 0 chr11 43969229 43969337 -104814135 + MIR3 SINE MIR 46 163 -45 1688 227 157 18 chr11 43970783 43971280 -104812192 - MLT1E LTR MaLR -1 592 27 9212 165 91 5 chr11 43971312 43973100 -104810372 - Tigger2 DNA MER2_type -1 2717 777 877 164 7 26 chr11 43973320 43973472 -104810000 - AluJo SINE Alu -150 162 14 292 230 11 11 chr11 43973485 43973572 -104809900 - L1M LINE L1 -767 5403 5317 401 135 14 0 chr11 43973653 43973727 -104809745 + L1MA7 LINE L1 6213 6287 -4 699 138 0 0 chr11 43973843 43973959 -104809513 - L1PA15 LINE L1 -4 6161 6046 269 265 15 0 chr11 43974652 43974720 -104808752 + L2 LINE L2 3202 3270 -2 199 424 93 0 chr11 43975532 43975650 -104807822 - L2 LINE L2 -25 3247 3119 1077 239 0 5 chr11 43975660 43975882 -104807590 - MER58A DNA MER1_type -3 221 1 238 293 75 9 chr11 43975955 43976061 -104807411 + L1ME LINE L1 5374 5486 -2322 377 356 72 14 chr11 43976161 43976369 -104807103 - MIR SINE MIR -10 252 33 235 326 0 0 chr11 43976504 43976593 -104806879 + L1ME LINE L1 5722 5810 -311 399 271 82 71 chr11 43977485 43977655 -104805817 - MER5B DNA MER1_type -6 172 1 854 225 39 0 chr11 43978796 43978978 -104804494 + MER5A DNA MER1_type 1 189 0 226 370 14 0 chr11 43978982 43979055 -104804417 + L2 LINE L2 3150 3223 -49 1774 134 75 31 chr11 43979445 43979804 -104803668 - THE1C LTR MaLR 0 375 1 2208 182 28 97 chr11 43980425 43981108 -104802364 - MER92B LTR ERV1 0 636 1 272 297 99 9 chr11 43981113 43981224 -104802248 - MIR SINE MIR -58 204 84 209 194 0 0 chr11 43983195 43983231 -104800241 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 1856 163 20 0 chr11 43984026 43984326 -104799146 - AluSx SINE Alu -6 306 1 274 294 70 49 chr11 43984850 43984993 -104798479 + L2 LINE L2 2824 2969 -303 672 140 9 0 chr11 43985138 43985245 -104798227 - MER41B LTR ERV1 -527 108 1 27 0 0 0 chr11 43987560 43987587 -104795885 + AT_rich Low_complexity Low_complexity 1 27 0 978 235 93 14 chr11 43987612 43987957 -104795515 - MER113 DNA MER1_type? -98 423 52 225 216 39 0 chr11 43988311 43988362 -104795110 - L2 LINE L2 0 3313 3261 661 285 44 44 chr11 43988866 43989185 -104794287 - MLT1I LTR MaLR 0 409 91 21 0 0 0 chr11 43989532 43989553 -104793919 + AT_rich Low_complexity Low_complexity 1 21 0 411 205 36 0 chr11 43989812 43989895 -104793577 - MLT1H1 LTR MaLR -7 548 463 22 0 0 0 chr11 43990542 43990564 -104792908 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chr11 43990602 43990629 -104792843 + (TTTAA)n Simple_repeat Simple_repeat 1 27 0 749 114 65 24 chr11 43990629 43990744 -104792728 - L1PA10 LINE L1 -21 6147 6025 316 276 40 19 chr11 43991077 43991188 -104792284 - MLT1H LTR MaLR -376 173 12 287 336 60 13 chr11 43992470 43992644 -104790828 + MIR SINE MIR 30 211 -51 846 289 83 18 chr11 43992796 43993220 -104790252 + L3 LINE CR1 832 1343 -234 2649 16 0 19 chr11 43993238 43993552 -104789920 + AluYa5 SINE Alu 1 308 -3 1965 105 69 0 chr11 43994526 43994844 -104788628 + AluSg SINE Alu 2 338 0 264 30 0 0 chr11 43995031 43995064 -104788408 + (CA)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr11 43995850 43995871 -104787601 + AT_rich Low_complexity Low_complexity 1 21 0 378 320 66 11 chr11 43996173 43996354 -104787118 - MIR SINE MIR -26 236 46 222 260 96 67 chr11 43997242 43997346 -104786126 + L2 LINE L2 3207 3313 0 977 275 74 18 chr11 43997667 43998108 -104785364 + MLT1C LTR MaLR 1 467 0 871 281 76 17 chr11 44000476 44000764 -104782708 - L2 LINE L2 -34 3279 2975 1107 206 48 75 chr11 44000767 44001140 -104782332 + MLT1A1 LTR MaLR 1 363 -2 317 345 51 35 chr11 44001141 44001338 -104782134 - L2 LINE L2 -338 2976 2777 1689 132 21 43 chr11 44001693 44002020 -104781452 - L1MA2 LINE L1 0 6304 5985 551 305 10 15 chr11 44002028 44002228 -104781244 - MIR SINE MIR -60 202 4 374 347 71 19 chr11 44002669 44002937 -104780535 + HAL1 LINE L1 824 1105 -1402 246 147 0 0 chr11 44002937 44002971 -104780501 + Alu SINE Alu 1 34 -267 844 237 6 0 chr11 44003492 44003665 -104779807 + FAM SINE Alu 1 174 -1 205 345 151 29 chr11 44003893 44004032 -104779440 - L2 LINE L2 0 3272 3117 2129 123 5 75 chr11 44006375 44006764 -104776708 + THE1B LTR MaLR 1 362 -2 11472 97 2 10 chr11 44006766 44008358 -104775114 + THE1B-int LTR MaLR 1 1580 0 2342 107 11 35 chr11 44008358 44008731 -104774741 + THE1B LTR MaLR 1 364 0 267 341 60 17 chr11 44008954 44009108 -104774364 - MIR SINE MIR -75 133 11 319 323 114 80 chr11 44011271 44011720 -104771752 + L2 LINE L2 2809 3272 0 207 329 37 0 chr11 44012164 44012246 -104771226 + MIR3 SINE MIR 99 183 -25 2202 114 0 0 chr11 44012524 44012821 -104770651 + AluSg1 SINE Alu 1 297 -12 184 319 0 0 chr11 44012821 44012868 -104770604 - MER5A DNA MER1_type -56 133 87 1539 192 21 10 chr11 44012868 44013159 -104770313 + AluJo SINE Alu 1 294 -18 960 298 72 57 chr11 44014284 44014498 -104768974 + L2 LINE L2 2837 3046 -267 531 0 0 0 chr11 44014498 44014557 -104768915 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 1707 125 4 12 chr11 44014560 44014808 -104768664 - AluSx SINE Alu -30 282 37 960 298 72 57 chr11 44014808 44015059 -104768413 + L2 LINE L2 3047 3313 0 229 389 75 48 chr11 44015332 44015774 -104767698 - L2 LINE L2 -4 3268 2815 837 322 69 13 chr11 44015822 44016198 -104767274 + MLT1I LTR MaLR 1 397 -12 205 396 9 0 chr11 44016244 44016350 -104767122 - L2 LINE L2 -609 2705 2599 378 283 57 121 chr11 44016384 44016536 -104766936 - L2 LINE L2 -705 2609 2449 28 0 0 0 chr11 44016536 44016564 -104766908 + AT_rich Low_complexity Low_complexity 1 28 0 378 283 57 121 chr11 44016564 44016857 -104766615 - L2 LINE L2 -865 2449 2167 22 0 0 0 chr11 44017030 44017052 -104766420 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 44017074 44017095 -104766377 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr11 44017682 44017706 -104765766 + AT_rich Low_complexity Low_complexity 1 24 0 204 353 19 104 chr11 44017853 44018122 -104765350 - L2 LINE L2 -188 3084 2839 467 258 39 77 chr11 44018502 44018666 -104764806 + MIR3 SINE MIR 49 207 -1 221 228 89 51 chr11 44020701 44020780 -104762692 - MIR SINE MIR -81 181 100 * 511 321 53 19 chr11 44020772 44020981 -104762491 + MIR SINE MIR 13 228 -34 783 235 16 5 chr11 44020981 44021168 -104762304 + MER5A DNA MER1_type 1 189 0 364 296 145 0 chr11 44021540 44021712 -104761760 + MIR SINE MIR 66 262 0 544 295 32 16 chr11 44021718 44021908 -104761564 - MIR SINE MIR -52 210 18 208 343 0 0 chr11 44022309 44022382 -104761090 + MIR3 SINE MIR 114 186 -22 198 132 57 0 chr11 44024008 44024061 -104759411 + CT-rich Low_complexity Low_complexity 1 56 0 1973 156 3 0 chr11 44024062 44024364 -104759108 - AluSx SINE Alu -7 305 3 185 91 0 30 chr11 44024493 44024526 -104758946 + (TTTTTA)n Simple_repeat Simple_repeat 3 34 0 1111 173 4 62 chr11 44024774 44025000 -104758472 + MER46A DNA MER2_type 2 214 -22 1291 185 31 16 chr11 44025002 44025256 -104758216 - AluJo SINE Alu -20 292 35 262 231 66 44 chr11 44025591 44025682 -104757790 + MIR SINE MIR 168 260 -2 303 306 49 35 chr11 44025839 44025983 -104757489 + MIR3 SINE MIR 16 161 -47 296 307 86 18 chr11 44026475 44026638 -104756834 - L2 LINE L2 -5 3308 3135 3070 237 47 16 chr11 44026912 44028354 -104755118 - L1MB8 LINE L1 0 6178 4678 182 333 171 8 chr11 44028405 44028528 -104754944 + L2 LINE L2 3121 3263 -9 263 323 55 30 chr11 44028624 44028788 -104754684 + MIR3 SINE MIR 11 178 -30 21 71 0 0 chr11 44028942 44028984 -104754488 + AT_rich Low_complexity Low_complexity 1 42 0 10404 181 39 20 chr11 44029873 44031416 -104752056 - L1PA13 LINE L1 -3 6160 4647 279 54 0 0 chr11 44031416 44031453 -104752019 + (TTA)n Simple_repeat Simple_repeat 2 38 0 1886 133 7 11 chr11 44031453 44031739 -104751733 - AluSq SINE Alu -28 285 1 10404 181 39 20 chr11 44031739 44031890 -104751582 - L1PA13 LINE L1 -1516 4647 4500 261 0 0 0 chr11 44031890 44031919 -104751553 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 10404 181 39 20 chr11 44031919 44033274 -104750198 - L1PA13 LINE L1 -1663 4500 3050 318 313 0 0 chr11 44034268 44034351 -104749121 - MER91 DNA MER1_type -61 129 47 246 347 69 42 chr11 44035107 44035323 -104748149 + L2 LINE L2 2665 2886 -428 1808 153 43 38 chr11 44036628 44037001 -104746471 + THE1C LTR MaLR 1 375 0 545 327 198 35 chr11 44037197 44037473 -104745999 - L2 LINE L2 -2 3311 2951 2041 80 4 0 chr11 44037473 44037737 -104745735 - AluY SINE Alu -2 309 45 545 327 198 35 chr11 44037737 44037855 -104745617 - L2 LINE L2 -362 2951 2853 1961 96 3 87 chr11 44037893 44038215 -104745257 - AluSc SINE Alu -14 295 1 301 290 31 68 chr11 44038392 44038554 -104744918 - L2 LINE L2 -2743 571 416 25 0 0 0 chr11 44039892 44039917 -104743555 + AT_rich Low_complexity Low_complexity 1 25 0 205 205 51 26 chr11 44040807 44040885 -104742587 + (TATAA)n Simple_repeat Simple_repeat 5 84 0 1779 179 19 22 chr11 44041046 44041415 -104742057 - THE1C LTR MaLR -3 372 5 345 290 88 31 chr11 44041827 44042020 -104741452 - L1ME4a LINE L1 -207 5914 5711 184 257 135 0 chr11 44043773 44043847 -104739625 + MIR SINE MIR 45 128 -80 249 289 44 11 chr11 44043941 44044031 -104739441 + LTR67 LTR ERVL 446 538 -19 422 320 102 15 chr11 44044139 44044345 -104739127 - MIR SINE MIR -2 260 37 654 223 0 0 chr11 44044400 44044521 -104738951 + FLAM_A SINE Alu 4 124 -9 21 0 0 0 chr11 44045532 44045553 -104737919 + AT_rich Low_complexity Low_complexity 1 21 0 306 73 0 0 chr11 44046055 44046096 -104737376 + (T)n Simple_repeat Simple_repeat 1 41 0 452 296 101 0 chr11 44046424 44046583 -104736889 - MIR SINE MIR -27 235 61 2280 105 0 6 chr11 44047144 44047458 -104736014 - AluSx SINE Alu 0 312 1 21 0 0 0 chr11 44047458 44047479 -104735993 + AT_rich Low_complexity Low_complexity 1 21 0 625 294 36 14 chr11 44047585 44047806 -104735666 - MIR SINE MIR -30 232 7 21 0 0 0 chr11 44048337 44048358 -104735114 + AT_rich Low_complexity Low_complexity 1 21 0 653 234 108 52 chr11 44049316 44049547 -104733925 + MIR SINE MIR 4 247 -15 189 0 0 0 chr11 44049576 44049597 -104733875 + (A)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr11 44050229 44050252 -104733220 + AT_rich Low_complexity Low_complexity 1 23 0 222 204 0 0 chr11 44050266 44050310 -104733162 + (TG)n Simple_repeat Simple_repeat 2 45 0 2347 97 0 3 chr11 44051372 44051682 -104731790 + AluSp SINE Alu 1 309 -4 1422 134 36 9 chr11 44052128 44052351 -104731121 + MER30 DNA MER1_type 1 229 -1 2148 305 76 45 chr11 44052862 44053272 -104730200 - L2 LINE L2 -461 2853 2457 1807 172 125 10 chr11 44053272 44053656 -104729816 + MSTA LTR MaLR 1 428 0 9218 140 3 63 chr11 44053658 44055336 -104728136 + MSTA-int LTR MaLR 3 1580 0 1159 193 179 35 chr11 44055336 44055710 -104727762 + MSTA LTR MaLR 1 428 0 2148 305 76 45 chr11 44055710 44056546 -104726926 - L2 LINE L2 -856 2458 1564 741 0 0 0 chr11 44056888 44056975 -104726497 + L1HS LINE L1 6069 6155 0 213 94 0 0 chr11 44056982 44057014 -104726458 + (A)n Simple_repeat Simple_repeat 1 32 0 1842 182 54 44 chr11 44058489 44058917 -104724555 + MSTB1 LTR MaLR 1 432 0 1165 174 147 26 chr11 44059324 44059649 -104723823 - MSTA LTR MaLR 0 428 43 4559 142 89 3 chr11 44059654 44060576 -104722896 - Tigger1 DNA MER2_type -180 2238 1149 26203 146 16 64 chr11 44060597 44063598 -104719874 - L1PA8 LINE L1 -1 6171 3655 2084 126 6 25 chr11 44063598 44063915 -104719557 - AluSx SINE Alu -1 311 1 26203 146 16 64 chr11 44063915 44067386 -104716086 - L1PA8 LINE L1 -2517 3655 20 306 203 0 14 chr11 44067386 44067455 -104716017 - MSTA LTR MaLR -359 69 2 679 318 104 53 chr11 44068018 44068791 -104714681 + L2 LINE L2 2457 3295 -18 860 251 58 81 chr11 44068959 44069070 -104714402 - MLT1C LTR MaLR 0 390 278 192 40 0 0 chr11 44069070 44069095 -104714377 + (TC)n Simple_repeat Simple_repeat 1 25 0 860 251 58 81 chr11 44069095 44069377 -104714095 - MLT1C LTR MaLR -112 278 6 216 300 14 29 chr11 44069400 44069470 -104714002 + L2 LINE L2 3156 3224 -48 225 143 0 0 chr11 44069678 44069713 -104713759 - L1PA13 LINE L1 -207 5956 5922 1298 146 0 0 chr11 44069715 44069921 -104713551 + L1PA13 LINE L1 5942 6147 -16 216 308 31 54 chr11 44069937 44070067 -104713405 - L2 LINE L2 -9 3304 3178 207 357 57 57 chr11 44071054 44071298 -104712174 - L2 LINE L2 -702 2612 2369 1214 236 57 38 chr11 44071327 44071696 -104711776 + MLT1B LTR MaLR 15 390 0 265 331 200 0 chr11 44071909 44071991 -104711481 - MER5A DNA MER1_type -7 182 118 2072 125 0 0 chr11 44071991 44072271 -104711201 - AluSx SINE Alu -20 292 13 265 331 200 0 chr11 44072271 44072333 -104711139 - MER5A DNA MER1_type -71 118 9 5264 140 12 20 chr11 44072813 44073423 -104710049 - L1PA15 LINE L1 -13 6152 5546 7349 195 52 73 chr11 44073423 44075216 -104708256 - MER52A LTR ERV1 0 1755 1 5264 140 12 20 chr11 44075216 44075758 -104707714 - L1PA15 LINE L1 -619 5546 5001 189 204 23 23 chr11 44076211 44076255 -104707217 - MIR SINE MIR -142 120 77 278 306 92 53 chr11 44076434 44076640 -104706832 + L1ME3A LINE L1 5392 5608 -562 1131 257 83 32 chr11 44076648 44077091 -104706381 + L1ME3A LINE L1 5695 6160 -10 361 343 28 0 chr11 44077216 44077324 -104706148 + L2 LINE L2 3133 3243 -29 1647 279 101 13 chr11 44078393 44078938 -104704534 - MLT1E LTR MaLR 0 593 1 27 0 0 0 chr11 44080411 44080438 -104703034 + AT_rich Low_complexity Low_complexity 1 27 0 297 75 0 0 chr11 44080465 44080505 -104702967 + (T)n Simple_repeat Simple_repeat 1 40 0 202 302 60 78 chr11 44080960 44081076 -104702396 - MER5A DNA MER1_type -75 114 1 3705 76 66 0 chr11 44081170 44081686 -104701786 + L1PA8 LINE L1 5566 6115 -57 348 329 7 18 chr11 44081762 44081905 -104701567 - MIR SINE MIR -55 153 14 299 258 155 10 chr11 44082082 44082179 -104701293 - L2 LINE L2 -1 3312 3202 442 337 49 76 chr11 44082332 44082589 -104700883 + L2 LINE L2 2504 2743 -571 2067 134 45 31 chr11 44082589 44082948 -104700524 - THE1B LTR MaLR 0 364 1 442 337 49 76 chr11 44082948 44083176 -104700296 + L2 LINE L2 2743 2976 -338 282 346 0 0 chr11 44083178 44083279 -104700193 + L2 LINE L2 3213 3313 0 2325 103 0 0 chr11 44083463 44083765 -104699707 + AluSg SINE Alu 1 302 -8 32 0 0 0 chr11 44084421 44084453 -104699019 + AT_rich Low_complexity Low_complexity 1 32 0 508 228 24 0 chr11 44084457 44084584 -104698888 - L1MB7 LINE L1 -20 6164 6035 * 1210 190 76 20 chr11 44084582 44085092 -104698380 - L1MB7 LINE L1 -586 5588 5060 344 262 103 24 chr11 44085682 44085808 -104697664 + MIR SINE MIR 70 205 -57 202 309 61 61 chr11 44086722 44086837 -104696635 + MIR3 SINE MIR 68 182 -26 237 290 80 57 chr11 44088047 44088223 -104695249 + MIR SINE MIR 80 259 -3 319 304 150 32 chr11 44088287 44088507 -104694965 + MIR SINE MIR 17 262 0 216 0 0 0 chr11 44088933 44088957 -104694515 + (A)n Simple_repeat Simple_repeat 1 24 0 190 217 0 43 chr11 44090307 44090399 -104693073 + (TATATG)n Simple_repeat Simple_repeat 4 91 0 2368 60 17 7 chr11 44091868 44092166 -104691306 - AluY SINE Alu -10 301 1 492 308 47 24 chr11 44092251 44092462 -104691010 - Charlie8 DNA MER1_type -2160 257 42 1134 189 27 8 chr11 44092867 44093127 -104690345 + L1P LINE L1 4924 5188 -958 271 220 240 20 chr11 44093129 44093229 -104690243 - MER34 LTR ERV1 -420 122 1 277 325 150 19 chr11 44094232 44094392 -104689080 + MIR SINE MIR 16 196 -66 276 30 0 0 chr11 44094418 44094451 -104689021 + (TG)n Simple_repeat Simple_repeat 1 33 0 868 217 11 6 chr11 44094523 44094698 -104688774 + AluJb SINE Alu 137 312 0 1087 235 35 45 chr11 44094983 44095387 -104688085 + LTR37A LTR ERV1 27 426 0 25 0 0 0 chr11 44096201 44096226 -104687246 + AT_rich Low_complexity Low_complexity 1 25 0 190 280 80 30 chr11 44096266 44096366 -104687106 + MIR3 SINE MIR 103 207 -1 2177 105 0 16 chr11 44096447 44096761 -104686711 + L1PA10 LINE L1 5807 6115 -53 540 110 0 0 chr11 44096784 44096907 -104686565 - AluY SINE Alu 0 333 211 451 48 16 0 chr11 44096960 44097085 -104686387 + L1PA10 LINE L1 6102 6227 0 314 80 13 40 chr11 44097343 44097418 -104686054 + (TA)n Simple_repeat Simple_repeat 2 74 0 430 129 24 0 chr11 44097482 44097567 -104685905 + (TA)n Simple_repeat Simple_repeat 1 87 0 216 0 0 0 chr11 44097568 44097592 -104685880 + (TG)n Simple_repeat Simple_repeat 2 25 0 944 209 188 41 chr11 44097608 44097953 -104685519 - MSTD LTR MaLR 0 396 1 416 218 115 0 chr11 44098436 44098523 -104684949 + MER81 DNA DNA 17 113 -1 213 347 41 10 chr11 44100448 44100546 -104682926 + MIR SINE MIR 40 140 -68 225 362 126 0 chr11 44100636 44100763 -104682709 - L2 LINE L2 -5 3267 3125 239 172 0 17 chr11 44101166 44101224 -104682248 + (TATATG)n Simple_repeat Simple_repeat 6 62 0 324 0 0 0 chr11 44103419 44103455 -104680017 + (TG)n Simple_repeat Simple_repeat 2 37 0 27 62 0 0 chr11 44103816 44103864 -104679608 + AT_rich Low_complexity Low_complexity 1 48 0 12841 138 85 17 chr11 44105038 44107290 -104676182 - Tigger1 DNA MER2_type -13 2405 1 315 301 165 51 chr11 44107420 44107596 -104675876 + MIR SINE MIR 41 236 -26 21 57 0 0 chr11 44108785 44108820 -104674652 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr11 44108930 44108960 -104674512 + AT_rich Low_complexity Low_complexity 1 30 0 258 32 0 0 chr11 44109852 44109883 -104673589 + (TA)n Simple_repeat Simple_repeat 1 31 0 531 0 0 0 chr11 44110808 44110867 -104672605 + (TC)n Simple_repeat Simple_repeat 1 59 0 474 358 95 29 chr11 44110881 44111280 -104672192 - L2 LINE L2 -77 3236 2792 1207 211 105 81 chr11 44111280 44111736 -104671736 - MLT1C LTR MaLR 0 467 1 474 358 95 29 chr11 44111736 44111834 -104671638 - L2 LINE L2 -521 2792 2702 509 252 87 90 chr11 44111835 44111934 -104671538 + L1ME1 LINE L1 5902 6000 -166 6308 84 9 5 chr11 44111934 44112980 -104670492 + L1PA8A LINE L1 5078 6131 0 509 252 87 90 chr11 44112980 44113146 -104670326 + L1ME1 LINE L1 6000 6166 0 21 36 0 0 chr11 44113866 44113894 -104669578 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 62 chr11 44114210 44114258 -104669214 + AT_rich Low_complexity Low_complexity 1 45 0 390 298 170 5 chr11 44114328 44114516 -104668956 + L2 LINE L2 3094 3312 -1 1089 62 62 56 chr11 44116000 44116178 -104667294 - AluY SINE Alu -6 305 127 1838 139 55 0 chr11 44116410 44116684 -104666788 + AluSx SINE Alu 1 289 -23 26 0 0 0 chr11 44116696 44116722 -104666750 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr11 44116805 44116829 -104666643 + AT_rich Low_complexity Low_complexity 1 24 0 359 252 43 52 chr11 44117177 44117292 -104666180 - MER81 DNA DNA 0 114 1 249 256 12 37 chr11 44117651 44117733 -104665739 + MIR SINE MIR 31 110 -152 1603 211 44 26 chr11 44117754 44117943 -104665529 + MLT1A1 LTR MaLR 19 218 -147 2158 135 154 0 chr11 44117943 44118314 -104665158 + MSTA LTR MaLR 1 428 0 1603 211 44 26 chr11 44118314 44118465 -104665007 + MLT1A1 LTR MaLR 218 365 0 5196 181 21 8 chr11 44118979 44120078 -104663394 + L1MA4 LINE L1 5189 6298 -2 623 118 0 0 chr11 44120078 44120163 -104663309 + AluSg/x SINE Alu 203 287 -25 273 57 0 0 chr11 44120166 44120201 -104663271 + (TATAA)n Simple_repeat Simple_repeat 5 39 0 238 305 37 24 chr11 44120269 44120351 -104663121 - MIR SINE MIR -170 92 10 195 100 0 0 chr11 44120795 44120825 -104662647 + (ATG)n Simple_repeat Simple_repeat 3 32 0 205 272 141 54 chr11 44120981 44121073 -104662399 - MIR SINE MIR -90 118 19 1594 214 48 30 chr11 44121776 44122235 -104661237 - MLT1C LTR MaLR 0 467 1 214 363 88 0 chr11 44122466 44122579 -104660893 - MIR SINE MIR -120 142 20 27 87 0 0 chr11 44122749 44122818 -104660654 + AT_rich Low_complexity Low_complexity 1 69 0 679 309 91 58 chr11 44123641 44124266 -104659206 - L2 LINE L2 -456 2858 2213 835 228 110 45 chr11 44124446 44124825 -104658647 - L1MC/D LINE L1 -860 5437 5273 181 343 34 41 chr11 44125010 44125156 -104658316 + MIR SINE MIR 62 206 -56 274 313 0 12 chr11 44125280 44125363 -104658109 + CT-rich Low_complexity Low_complexity 5 86 0 327 146 0 0 chr11 44126022 44126077 -104657395 + (GGAA)n Simple_repeat Simple_repeat 2 56 0 1834 164 93 49 chr11 44126163 44126395 -104657077 - MSTB LTR MaLR 0 426 167 2331 111 0 0 chr11 44126395 44126702 -104656770 - AluSx SINE Alu -5 307 1 1834 164 93 49 chr11 44126702 44126877 -104656595 - MSTB LTR MaLR -259 167 1 216 204 0 0 chr11 44127010 44127054 -104656418 + (TAA)n Simple_repeat Simple_repeat 1 44 0 349 0 0 0 chr11 44127239 44127278 -104656194 - MER4D LTR ERV1 -74 798 760 234 176 20 0 chr11 44129176 44129227 -104654245 - L1ME LINE L1 -223 5898 5847 223 372 13 0 chr11 44130890 44130968 -104652504 - L2 LINE L2 -1 3271 3193 323 287 0 0 chr11 44131009 44131096 -104652376 + MIR SINE MIR 170 256 -6 452 284 72 72 chr11 44131270 44131534 -104651938 - MER102b DNA MER1_type -9 332 69 222 335 65 53 chr11 44131747 44131917 -104651555 + MER5B DNA MER1_type 4 175 -3 224 370 62 35 chr11 44132007 44132234 -104651238 + L2 LINE L2 2859 3091 -181 373 188 134 40 chr11 44133608 44133757 -104649715 + L1MC4 LINE L1 7661 7823 -219 294 76 39 0 chr11 44133749 44133800 -104649672 - L1PA8 LINE L1 -8 6164 6095 * 26 50 0 0 chr11 44133800 44133840 -104649632 + AT_rich Low_complexity Low_complexity 1 40 0 388 343 94 52 chr11 44134383 44135018 -104648454 + L2 LINE L2 1698 2359 -955 2176 185 39 14 chr11 44135035 44135451 -104648021 + MSTB LTR MaLR 1 426 0 433 346 176 29 chr11 44136160 44136649 -104646823 - L2 LINE L2 -466 2848 2288 247 333 51 13 chr11 44136683 44136761 -104646711 - MER91A DNA MER1_type 0 196 116 24 0 0 0 chr11 44138939 44138963 -104644509 + AT_rich Low_complexity Low_complexity 1 24 0 392 366 31 31 chr11 44139012 44139269 -104644203 + L3 LINE CR1 278 534 -1043 359 330 200 0 chr11 44139288 44139473 -104643999 + L3 LINE CR1 1243 1464 -113 1294 198 119 44 chr11 44139510 44140030 -104643442 - Charlie1a DNA MER1_type -1 1454 896 384 241 12 0 chr11 44140030 44140113 -104643359 + MER1A DNA MER1_type 1 84 -443 * 3256 123 6 38 chr11 44140086 44140613 -104642859 + MER1A DNA MER1_type 17 529 0 2913 235 47 35 chr11 44140613 44141505 -104641967 - Charlie1a DNA MER1_type -552 903 1 571 257 53 23 chr11 44141509 44141680 -104641792 + MIR SINE MIR 13 188 -74 405 39 0 0 chr11 44141741 44141792 -104641680 + (TA)n Simple_repeat Simple_repeat 1 51 0 1314 177 119 29 chr11 44141912 44142222 -104641250 + MER2 DNA MER2_type 8 345 0 607 316 47 5 chr11 44142530 44142742 -104640730 + MIR SINE MIR 28 248 -14 2388 77 0 13 chr11 44143004 44143317 -104640155 + AluY SINE Alu 1 309 -2 539 22 0 45 chr11 44144297 44144386 -104639086 + (TA)n Simple_repeat Simple_repeat 1 85 0 269 321 168 8 chr11 44144579 44144710 -104638762 + MIR SINE MIR 25 176 -86 306 310 35 44 chr11 44144796 44144999 -104638473 + MIR SINE MIR 15 215 -47 1427 197 60 18 chr11 44145421 44145705 -104637767 - AluJb SINE Alu -6 296 1 357 264 16 16 chr11 44145875 44146004 -104637468 - L1MC4 LINE L1 0 8042 7914 31 0 0 0 chr11 44146028 44146059 -104637413 + AT_rich Low_complexity Low_complexity 1 31 0 308 255 66 9 chr11 44146124 44146230 -104637242 - L1MC4 LINE L1 -242 7800 7689 1113 52 0 0 chr11 44146669 44146805 -104636667 + AluSg/x SINE Alu 175 310 0 207 188 58 58 chr11 44147202 44147271 -104636201 + MIR SINE MIR 147 215 -47 1427 197 60 18 chr11 44147693 44147977 -104635495 - AluJb SINE Alu -6 296 1 357 264 16 16 chr11 44148147 44148276 -104635196 - L1MC4 LINE L1 0 8042 7914 31 0 0 0 chr11 44148300 44148331 -104635141 + AT_rich Low_complexity Low_complexity 1 31 0 2917 3 0 0 chr11 44148498 44148811 -104634661 + AluYb8 SINE Alu 1 313 -5 1088 53 0 0 chr11 44149263 44149395 -104634077 + AluSg/x SINE Alu 177 308 -4 1046 77 35 0 chr11 44149838 44150007 -104633465 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 569 157 21 14 chr11 44150008 44150148 -104633324 + CT-rich Low_complexity Low_complexity 2 142 0 638 238 74 11 chr11 44150268 44150457 -104633015 - MER3 DNA MER1_type -1 208 8 2230 113 45 5 chr11 44150457 44150959 -104632513 - L1PA12 LINE L1 -688 5480 4956 4475 110 8 9 chr11 44150959 44151629 -104631843 + L1PA12 LINE L1 5499 6168 0 320 227 147 0 chr11 44151674 44151749 -104631723 + MER5A DNA MER1_type 10 95 -94 2407 61 0 3 chr11 44152860 44153155 -104630317 - AluSc SINE Alu -15 294 1 704 225 13 20 chr11 44153190 44153341 -104630131 + MIR SINE MIR 51 200 -62 2083 121 0 32 chr11 44155362 44155677 -104627795 + AluSx SINE Alu 6 310 -2 989 231 9 14 chr11 44155702 44155918 -104627554 - MER20 DNA MER1_type -1 218 4 209 404 53 18 chr11 44156008 44156293 -104627179 - L2 LINE L2 -557 2757 2463 264 330 54 77 chr11 44156424 44156645 -104626827 - L2 LINE L2 -859 2455 2240 3066 150 21 4 chr11 44157004 44157490 -104625982 + MER1A DNA MER1_type 31 524 -5 325 248 73 46 chr11 44158533 44158642 -104624830 + MIR SINE MIR 105 216 -46 263 71 100 0 chr11 44158888 44158940 -104624532 - MLT2B3 LTR ERVL 0 554 398 2249 245 14 21 chr11 44159180 44159699 -104623773 - MLT2B3 LTR ERVL -39 515 1 22 0 0 0 chr11 44160634 44160656 -104622816 + AT_rich Low_complexity Low_complexity 1 22 0 200 217 0 0 chr11 44160904 44160950 -104622522 + T-rich Low_complexity Low_complexity 1 46 0 1838 137 128 16 chr11 44161056 44161422 -104622050 - MSTA LTR MaLR 0 428 22 1669 171 82 6 chr11 44161523 44161851 -104621621 + THE1C LTR MaLR 23 375 0 9017 189 16 11 chr11 44161863 44161927 -104621545 - MSTA-int LTR MaLR 0 1651 1589 1948 154 0 0 chr11 44161927 44162213 -104621259 + AluSx SINE Alu 13 298 -14 9017 189 16 11 chr11 44162213 44163790 -104619682 - MSTA-int LTR MaLR -62 1589 1 2108 129 135 5 chr11 44163790 44164169 -104619303 - MSTA LTR MaLR 0 428 1 441 248 113 78 chr11 44164189 44164419 -104619053 - MLT1H LTR MaLR -170 379 142 12195 167 29 43 chr11 44164504 44166947 -104616525 - Tigger1 DNA MER2_type -11 2407 1 397 138 25 0 chr11 44167114 44167194 -104616278 + CT-rich Low_complexity Low_complexity 3 84 0 211 224 61 0 chr11 44167295 44167344 -104616128 + L2 LINE L2 3023 3074 -198 7791 36 4 0 chr11 44168251 44169974 -104613498 + L1PA4 LINE L1 4426 6152 -3 506 298 0 13 chr11 44170115 44170273 -104613199 - MIR SINE MIR 0 262 107 217 284 75 0 chr11 44170839 44170906 -104612566 + MIR SINE MIR 53 124 -138 946 220 98 31 chr11 44171914 44172314 -104611158 - MLT1D LTR MaLR 0 505 1 388 278 10 0 chr11 44172367 44172464 -104611008 - MER58A DNA MER1_type -8 99 2 369 145 0 0 chr11 44174188 44174250 -104609222 + (TTCC)n Simple_repeat Simple_repeat 3 64 0 390 248 8 66 chr11 44174927 44175048 -104608424 + MER81 DNA DNA 1 114 0 393 290 155 19 chr11 44175159 44175314 -104608158 + MER5B DNA MER1_type 3 178 0 538 257 27 59 chr11 44175949 44176099 -104607373 - MIR SINE MIR -28 234 90 1891 165 16 27 chr11 44176099 44176468 -104607004 - MLT1A1 LTR MaLR 0 365 1 538 257 27 59 chr11 44176468 44176504 -104606968 - MIR SINE MIR -172 90 54 201 293 0 0 chr11 44176862 44176920 -104606552 + GA-rich Low_complexity Low_complexity 1 58 0 236 186 0 100 chr11 44177757 44177827 -104605645 - MIR SINE MIR -75 187 125 321 26 0 0 chr11 44181414 44181452 -104602020 + (GA)n Simple_repeat Simple_repeat 2 39 0 * 324 0 0 0 chr11 44181451 44181487 -104601985 + (TG)n Simple_repeat Simple_repeat 2 37 0 211 328 40 48 chr11 44182071 44182196 -104601276 + MIR SINE MIR 21 144 -64 468 303 83 18 chr11 44182261 44182479 -104600993 - MIR SINE MIR 0 262 31 298 231 43 103 chr11 44183362 44183596 -104599876 + L1ME4a LINE L1 5798 6017 -104 5055 33 0 0 chr11 44184338 44184947 -104598525 - L1P LINE L1 -3877 2269 1661 7872 14 0 0 chr11 44184947 44185970 -104597502 + L1PA3 LINE L1 5133 6155 0 1198 242 98 105 chr11 44186295 44186997 -104596475 + L1MEc LINE L1 36 732 -5664 1021 272 6 6 chr11 44187297 44187632 -104595840 - L1 LINE L1 -3236 2910 2576 4741 142 5 17 chr11 44187633 44188401 -104595071 + L1PA16 LINE L1 5399 6157 -9 2379 47 33 10 chr11 44189019 44189319 -104594153 + AluY SINE Alu 3 309 -2 205 290 140 21 chr11 44190329 44190422 -104593050 - MIR SINE MIR -118 144 41 389 336 96 5 chr11 44190937 44191145 -104592327 + MIR SINE MIR 8 234 -28 187 317 108 25 chr11 44191144 44191264 -104592208 - MIR SINE MIR -15 247 118 * 1230 302 58 11 chr11 44191985 44192419 -104591053 + LTR16B LTR ERVL 11 464 0 245 353 29 59 chr11 44192448 44192618 -104590854 + L2 LINE L2 3146 3310 -3 183 349 107 20 chr11 44193918 44194067 -104589405 + MIR SINE MIR 79 240 -22 * 565 220 30 60 chr11 44194025 44194193 -104589279 - MIR SINE MIR 0 262 100 184 267 22 0 chr11 44194230 44194275 -104589197 + L2 LINE L2 3209 3254 -18 245 394 68 0 chr11 44194399 44194531 -104588941 - L2 LINE L2 -39 3233 3093 183 80 0 0 chr11 44194815 44194840 -104588632 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 24 32 0 0 chr11 44195328 44195359 -104588113 + AT_rich Low_complexity Low_complexity 1 31 0 1585 156 47 0 chr11 44196381 44196497 -104586975 + AluJo SINE Alu 1 110 -202 180 0 0 0 chr11 44196497 44196517 -104586955 + (CAAA)n Simple_repeat Simple_repeat 4 23 0 1585 156 47 0 chr11 44196517 44196675 -104586797 + AluJo SINE Alu 110 288 -24 426 39 0 0 chr11 44196693 44196745 -104586727 + (CA)n Simple_repeat Simple_repeat 2 53 0 2735 131 19 19 chr11 44196848 44197322 -104586150 - L1PA16 LINE L1 0 6166 5693 545 317 48 10 chr11 44197494 44197702 -104585770 + MIR SINE MIR 44 259 -3 2472 60 3 0 chr11 44197702 44198001 -104585471 + AluY SINE Alu 1 300 -11 486 0 0 0 chr11 44198271 44198325 -104585147 + (TA)n Simple_repeat Simple_repeat 1 54 0 28 61 0 0 chr11 44199246 44199295 -104584177 + AT_rich Low_complexity Low_complexity 1 49 0 6833 31 5 1 chr11 44199308 44200780 -104582692 - L1PA4 LINE L1 -121 6034 4558 223 348 71 22 chr11 44201849 44202033 -104581439 + MIR SINE MIR 41 233 -29 216 328 153 21 chr11 44202556 44202745 -104580727 + MIR SINE MIR 13 226 -36 192 235 162 15 chr11 44204176 44204244 -104579228 - L2 LINE L2 -4 3268 3191 2193 101 7 3 chr11 44205001 44205298 -104578174 - AluSq SINE Alu -15 298 1 299 350 44 12 chr11 44205450 44205610 -104577862 + MIR SINE MIR 72 236 -26 3229 172 41 27 chr11 44205710 44205771 -104577701 + Tigger3b DNA MER2_type 12 71 -2957 4204 84 39 3 chr11 44205771 44206355 -104577117 - LTR14B LTR ERVK 0 608 4 3229 172 41 27 chr11 44206355 44206970 -104576502 + Tigger3b DNA MER2_type 71 701 -2327 704 139 0 0 chr11 44206970 44207092 -104576380 + L1MA4 LINE L1 6165 6286 -14 3229 172 41 27 chr11 44207092 44207123 -104576349 + Tigger3b DNA MER2_type 701 730 -501 425 179 0 0 chr11 44207134 44207201 -104576271 + AluS SINE Alu 1 67 -246 1516 265 103 19 chr11 44257418 44258020 -104525452 + MER20B DNA MER1_type 6 671 -112 219 88 0 0 chr11 44258020 44258054 -104525418 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1516 265 103 19 chr11 44258054 44258122 -104525350 + MER20B DNA MER1_type 671 732 -51 808 128 7 54 chr11 44258283 44258432 -104525040 - FRAM SINE Alu -13 163 22 24 85 0 0 chr11 44258469 44258528 -104524944 + AT_rich Low_complexity Low_complexity 1 59 0 331 350 26 0 chr11 44259241 44259391 -104524081 + L2 LINE L2 2853 3006 -307 338 398 27 16 chr11 44259391 44259577 -104523895 + MER91A DNA MER1_type 1 188 -8 329 234 175 19 chr11 44259611 44259765 -104523707 + L2 LINE L2 3030 3207 -106 848 140 15 7 chr11 44259865 44260001 -104523471 - AluSq/x SINE Alu -176 137 1 303 161 0 0 chr11 44260310 44260366 -104523106 + (TG)n Simple_repeat Simple_repeat 2 57 0 2064 122 7 0 chr11 44261546 44261833 -104521639 - AluSg SINE Alu -21 289 1 234 329 14 0 chr11 44262186 44262259 -104521213 + MIR SINE MIR 189 262 0 218 278 19 0 chr11 44263267 44263321 -104520151 - MIR SINE MIR -64 144 90 293 258 0 54 chr11 44263579 44263672 -104519800 - MER5A DNA MER1_type -98 91 4 247 115 77 19 chr11 44263865 44263917 -104519555 - MLT2A2 LTR ERVL 0 453 399 180 0 0 0 chr11 44263934 44263954 -104519518 + (CA)n Simple_repeat Simple_repeat 2 21 0 2904 77 39 0 chr11 44263954 44264342 -104519130 - MLT2A2 LTR ERVL -50 403 1 180 0 0 0 chr11 44266102 44266122 -104517350 + (CA)n Simple_repeat Simple_repeat 2 21 0 427 298 227 5 chr11 44267508 44267706 -104515766 - MIR SINE MIR 0 262 21 252 59 0 0 chr11 44267905 44267939 -104515533 + (TTTTTA)n Simple_repeat Simple_repeat 2 35 0 2708 87 3 21 chr11 44268395 44268775 -104514697 - THE1C LTR MaLR 0 375 3 291 333 65 25 chr11 44269264 44269465 -104514007 + L2 LINE L2 2306 2514 -800 464 334 91 54 chr11 44269504 44269631 -104513841 + L2 LINE L2 2736 2857 -456 3055 80 11 20 chr11 44269631 44270083 -104513389 - LTR7 LTR ERV1 -2 448 1 464 334 91 54 chr11 44270083 44270472 -104513000 + L2 LINE L2 2857 3295 -18 229 313 91 80 chr11 44270672 44270947 -104512525 + MLT1H1 LTR MaLR 1 278 -252 388 281 150 0 chr11 44270953 44271108 -104512364 + MLT1H1 LTR MaLR 383 555 0 283 354 41 37 chr11 44273305 44273548 -104509924 - MLT1L LTR MaLR 0 615 372 750 137 0 0 chr11 44273691 44273808 -104509664 - THE1B LTR MaLR 0 364 248 593 106 160 0 chr11 44273807 44273901 -104509571 - THE1B LTR MaLR -266 109 1 * 202 381 7 20 chr11 44274119 44274266 -104509206 + L2 LINE L2 2626 2770 -544 188 340 66 9 chr11 44274394 44274500 -104508972 + L2 LINE L2 2765 2876 -438 1386 271 98 22 chr11 44275039 44275577 -104507895 - MLT1L LTR MaLR 0 615 37 643 268 138 42 chr11 44276543 44276782 -104506690 - MIR SINE MIR 0 262 1 507 274 119 46 chr11 44276880 44277099 -104506373 - MIR SINE MIR -10 252 18 450 313 46 35 chr11 44277877 44278136 -104505336 + MIR SINE MIR 1 262 0 272 290 154 19 chr11 44278938 44279100 -104504372 - MIR SINE MIR -73 189 6 216 307 44 18 chr11 44279105 44279219 -104504253 - L3 LINE CR1 -761 816 700 229 128 0 0 chr11 44279747 44279786 -104503686 + L1MC4 LINE L1 6663 6701 -1341 183 129 0 0 chr11 44279789 44279820 -104503652 + (TA)n Simple_repeat Simple_repeat 2 32 0 280 315 79 16 chr11 44281280 44281407 -104502065 + MIR SINE MIR 20 154 -108 223 263 150 0 chr11 44281986 44282066 -104501406 - L3 LINE CR1 -1 1576 1485 374 314 36 36 chr11 44282193 44282333 -104501139 - MIR3 SINE MIR -48 160 21 183 156 0 0 chr11 44282897 44282929 -104500543 + T-rich Low_complexity Low_complexity 1 32 0 352 291 159 21 chr11 44283574 44283763 -104499709 - MIR SINE MIR -17 245 31 232 313 36 12 chr11 44283899 44283982 -104499490 - MIR SINE MIR -133 129 45 280 261 49 70 chr11 44284302 44284444 -104499028 - MIR SINE MIR 0 262 124 222 174 0 0 chr11 44284687 44284733 -104498739 + A-rich Low_complexity Low_complexity 1 46 0 4491 170 32 13 chr11 44285283 44286131 -104497341 - MER6 DNA MER2_type -1 864 1 2554 59 0 0 chr11 44286306 44286611 -104496861 + AluY SINE Alu 1 305 -6 248 274 0 26 chr11 44286901 44287014 -104496458 - L1MC5 LINE L1 -748 7213 7104 2320 62 0 86 chr11 44287014 44287351 -104496121 + AluY SINE Alu 1 308 -3 416 274 142 9 chr11 44288111 44288349 -104495123 + MIR SINE MIR 2 246 -16 315 329 70 24 chr11 44288869 44289082 -104494390 + MIR SINE MIR 10 232 -30 294 348 43 0 chr11 44289566 44289704 -104493768 + MIR SINE MIR 48 191 -71 1799 199 0 0 chr11 44290150 44290457 -104493015 + AluJb SINE Alu 1 307 -5 429 279 23 23 chr11 44290466 44290595 -104492877 + MIR SINE MIR 37 165 -97 420 20 0 0 chr11 44290997 44291046 -104492426 + (TG)n Simple_repeat Simple_repeat 1 49 0 201 315 34 0 chr11 44291617 44291706 -104491766 - L3b LINE CR1 -385 1198 1107 260 333 71 7 chr11 44291822 44291963 -104491509 + L2 LINE L2 3160 3309 -4 372 71 0 0 chr11 44293189 44293245 -104490227 + (TG)n Simple_repeat Simple_repeat 2 57 0 228 35 0 0 chr11 44293253 44293282 -104490190 + (CA)n Simple_repeat Simple_repeat 2 30 0 195 250 0 0 chr11 44294072 44294108 -104489364 - L2 LINE L2 -2925 389 354 285 364 40 30 chr11 44294770 44294968 -104488504 + MIR SINE MIR 49 248 -14 218 271 17 17 chr11 44295233 44295292 -104488180 + L2 LINE L2 3205 3263 -9 212 344 52 39 chr11 44296186 44296340 -104487132 + L2 LINE L2 3139 3294 -19 696 250 57 10 chr11 44296387 44296579 -104486893 + MER3 DNA MER1_type 9 209 0 241 298 58 29 chr11 44297437 44297541 -104485931 - MIR SINE MIR -19 243 137 208 264 0 0 chr11 44298988 44299041 -104484431 + (TTA)n Simple_repeat Simple_repeat 1 53 0 225 290 16 0 chr11 44299041 44299103 -104484369 + MIR SINE MIR 95 157 -105 21 0 0 0 chr11 44299868 44299889 -104483583 + AT_rich Low_complexity Low_complexity 1 21 0 25 65 0 0 chr11 44300028 44300074 -104483398 + AT_rich Low_complexity Low_complexity 1 46 0 2688 157 18 7 chr11 44300093 44300540 -104482932 - Tigger2 DNA MER2_type -2 2716 2265 399 147 29 0 chr11 44300521 44300589 -104482883 - Tigger2 DNA MER2_type -2648 70 1 * 462 321 122 15 chr11 44300603 44300799 -104482673 + MIR SINE MIR 1 217 -45 1147 179 0 0 chr11 44300811 44301029 -104482443 - L1P LINE L1 -909 5237 5020 818 116 0 0 chr11 44301029 44301146 -104482326 + L1PA13 LINE L1 6038 6158 -5 1263 113 80 5 chr11 44301601 44301813 -104481659 + MER30 DNA MER1_type 3 230 0 238 262 71 12 chr11 44303059 44303143 -104480329 - MIR SINE MIR 0 262 174 355 306 70 13 chr11 44303544 44303701 -104479771 - MIR SINE MIR -79 183 18 970 271 53 12 chr11 44304829 44305169 -104478303 - MLT1C LTR MaLR -61 406 53 203 158 79 0 chr11 44306234 44306272 -104477200 + L2 LINE L2 3265 3305 -8 365 215 45 79 chr11 44306303 44306480 -104476992 - L1MA9 LINE L1 -185 6106 5936 22 0 0 0 chr11 44306752 44306774 -104476698 + AT_rich Low_complexity Low_complexity 1 22 0 554 339 60 51 chr11 44306826 44307361 -104476111 - L2 LINE L2 0 3313 2779 209 108 0 27 chr11 44307487 44307524 -104475948 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 21 36 0 0 chr11 44307656 44307684 -104475788 + AT_rich Low_complexity Low_complexity 1 28 0 225 326 23 0 chr11 44308441 44308527 -104474945 + MIR SINE MIR 103 190 -72 979 168 74 5 chr11 44311229 44311431 -104472041 + L1MD3 LINE L1 7766 7981 -14 197 105 0 26 chr11 44311631 44311669 -104471803 + (CATA)n Simple_repeat Simple_repeat 2 38 0 25 51 0 0 chr11 44311714 44311753 -104471719 + AT_rich Low_complexity Low_complexity 1 39 0 487 276 69 69 chr11 44312101 44312623 -104470849 - L1M4 LINE L1 -3126 3020 2499 2225 80 7 3 chr11 44313047 44313336 -104470136 + AluY SINE Alu 1 290 -21 1390 41 17 0 chr11 44313435 44313607 -104469865 + LTR17 LTR ERV1 152 326 -454 297 109 0 0 chr11 44313607 44313653 -104469819 + (A)n Simple_repeat Simple_repeat 1 46 0 455 307 73 13 chr11 44313654 44313954 -104469518 - MER31-int LTR ERV1 -2163 2773 2456 197 337 69 0 chr11 44314173 44314274 -104469198 + MIR SINE MIR 77 184 -78 2112 145 13 26 chr11 44315789 44316168 -104467304 - THE1C LTR MaLR -1 374 1 2544 51 0 13 chr11 44316173 44316484 -104466988 - AluY SINE Alu -4 307 1 708 258 40 27 chr11 44317240 44317465 -104466007 + L2 LINE L2 3085 3312 -1 180 0 0 0 chr11 44317737 44317757 -104465715 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 185 260 312 0 chr11 44317778 44317855 -104465617 - L2 LINE L2 -47 3225 3125 1094 233 78 3 chr11 44317993 44318276 -104465196 - L1ME1 LINE L1 -297 5869 5566 2084 131 39 28 chr11 44318326 44318684 -104464788 + THE1B LTR MaLR 3 364 0 303 167 0 0 chr11 44318684 44318732 -104464740 + MLT1C LTR MaLR 420 467 0 1560 258 68 29 chr11 44318732 44319432 -104464040 - L1ME1 LINE L1 -743 5403 4691 564 168 13 7 chr11 44320041 44320196 -104463276 + (TA)n Simple_repeat Simple_repeat 2 157 0 244 289 35 136 chr11 44320799 44320893 -104462579 + MLT1I LTR MaLR 1 103 -306 1642 189 14 3 chr11 44320893 44321190 -104462282 - AluJb SINE Alu -8 304 5 244 289 35 136 chr11 44321190 44321323 -104462149 + MLT1I LTR MaLR 103 205 -204 304 340 92 0 chr11 44321784 44321925 -104461547 + L2 LINE L2 2919 3072 -241 1709 137 7 33 chr11 44321948 44322248 -104461224 - THE1B LTR MaLR 0 364 73 697 234 74 27 chr11 44322523 44322780 -104460692 + L1MEc LINE L1 1645 1913 -4483 1206 275 52 39 chr11 44322798 44323020 -104460452 + L1MEc LINE L1 1868 2086 -4129 1914 127 68 3 chr11 44323020 44323312 -104460160 + AluSx SINE Alu 1 311 -1 1206 275 52 39 chr11 44323312 44323791 -104459681 + L1MEc LINE L1 2086 2547 -3668 1163 260 0 6 chr11 44323844 44324186 -104459286 + L1MEc LINE L1 2651 2990 -3225 629 201 28 35 chr11 44324192 44324336 -104459136 - MLT1A1 LTR MaLR -143 222 80 1351 245 56 49 chr11 44324337 44324857 -104458615 - MER39 LTR ERV1 0 707 1 447 121 15 0 chr11 44324857 44324923 -104458549 - MLT1A2 LTR MaLR -291 83 17 1157 150 47 0 chr11 44325129 44325322 -104458150 + MER2 DNA MER2_type 1 202 -143 22 0 0 0 chr11 44325358 44325380 -104458092 + AT_rich Low_complexity Low_complexity 1 22 0 322 292 50 17 chr11 44325628 44325748 -104457724 - MIR SINE MIR -10 252 129 31 0 0 0 chr11 44325771 44325802 -104457670 + AT_rich Low_complexity Low_complexity 1 31 0 211 263 13 0 chr11 44327596 44327672 -104455800 + (TG)n Simple_repeat Simple_repeat 1 77 0 249 299 65 9 chr11 44331626 44331733 -104451739 + MIR SINE MIR 94 206 -56 27 29 0 0 chr11 44332240 44332274 -104451198 + AT_rich Low_complexity Low_complexity 1 34 0 305 298 89 16 chr11 44332411 44332535 -104450937 + MIR SINE MIR 98 230 -32 186 43 0 0 chr11 44334227 44334250 -104449222 + (CA)n Simple_repeat Simple_repeat 2 24 0 314 275 36 58 chr11 44335000 44335138 -104448334 - MIR SINE MIR -109 153 19 261 183 167 67 chr11 44336712 44336832 -104446640 - MIR SINE MIR -1 261 130 2187 120 3 0 chr11 44337020 44337321 -104446151 + AluSq SINE Alu 1 302 -11 183 42 0 0 chr11 44337483 44337507 -104445965 + (A)n Simple_repeat Simple_repeat 1 24 0 200 128 26 26 chr11 44338712 44338751 -104444721 - MIR SINE MIR -29 233 195 273 98 0 0 chr11 44338760 44338801 -104444671 + (CA)n Simple_repeat Simple_repeat 1 41 0 204 389 11 0 chr11 44339416 44339506 -104443966 + MIR SINE MIR 158 248 -14 23 33 0 0 chr11 44339515 44339545 -104443927 + AT_rich Low_complexity Low_complexity 1 30 0 611 256 34 23 chr11 44341083 44341259 -104442213 - MIR SINE MIR -70 192 15 665 279 113 78 chr11 44341588 44342103 -104441369 + MLT1H1 LTR MaLR 18 555 0 218 250 0 0 chr11 44342333 44342385 -104441087 - L2 LINE L2 0 3313 3262 237 65 0 0 chr11 44342479 44342510 -104440962 + (CA)n Simple_repeat Simple_repeat 2 32 0 365 414 7 26 chr11 44342631 44342823 -104440649 - MIR SINE MIR -69 139 3 2355 92 3 0 chr11 44343275 44343570 -104439902 + AluSp SINE Alu 2 297 -16 1817 188 9 3 chr11 44343858 44344199 -104439273 + MER2 DNA MER2_type 2 344 0 1963 136 13 22 chr11 44344454 44344826 -104438646 + AluSq SINE Alu 1 369 0 1644 195 3 7 chr11 44344840 44345148 -104438324 - AluJb SINE Alu -2 310 4 180 0 0 0 chr11 44345267 44345287 -104438185 + (A)n Simple_repeat Simple_repeat 1 20 0 234 0 0 0 chr11 44345301 44345327 -104438145 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2725 42 0 0 chr11 44345608 44345918 -104437554 + AluY SINE Alu 1 310 -1 377 303 98 25 chr11 44346010 44346287 -104437185 + L1ME LINE L1 5484 5780 -341 1295 207 58 55 chr11 44347406 44347769 -104435703 - THE1C LTR MaLR -11 364 1 243 313 119 34 chr11 44347959 44348135 -104435337 + L2 LINE L2 2524 2714 -600 1291 194 26 47 chr11 44348135 44348272 -104435200 + L1PB4 LINE L1 4927 5065 -1086 198 0 0 0 chr11 44348272 44348294 -104435178 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1291 194 26 47 chr11 44348294 44348555 -104434917 + L1PB4 LINE L1 5065 5319 -832 4437 147 60 12 chr11 44348662 44349460 -104434012 + L1PB4 LINE L1 5319 6154 -2 465 226 35 0 chr11 44350315 44350430 -104433042 - MER31-int LTR ERV1 -3789 1147 1029 424 252 126 0 chr11 44350661 44350780 -104432692 - MER92B LTR ERV1 -502 134 1 615 323 0 0 chr11 44350780 44350947 -104432525 - MIR SINE MIR -88 174 8 297 0 0 0 chr11 44351054 44351087 -104432385 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 180 216 0 0 chr11 44351192 44351243 -104432229 + (TA)n Simple_repeat Simple_repeat 1 51 0 1471 201 24 30 chr11 44351689 44351890 -104431582 - MER2 DNA MER2_type -14 331 131 3909 191 41 24 chr11 44351890 44352513 -104430959 + MER6 DNA MER2_type 1 644 -221 1756 181 3 13 chr11 44352513 44352812 -104430660 - AluJb SINE Alu -10 302 7 3909 191 41 24 chr11 44352812 44353038 -104430434 + MER6 DNA MER2_type 644 865 0 1471 201 24 30 chr11 44353038 44353169 -104430303 - MER2 DNA MER2_type -214 131 1 285 29 0 0 chr11 44353437 44353471 -104430001 + (A)n Simple_repeat Simple_repeat 1 34 0 229 301 130 24 chr11 44353787 44353910 -104429562 - MIR SINE MIR -49 213 78 684 142 71 61 chr11 44355126 44355323 -104428149 - THE1B LTR MaLR -165 199 1 234 310 28 48 chr11 44355336 44355481 -104427991 + L2 LINE L2 3112 3253 -60 1638 183 0 53 chr11 44355515 44355838 -104427634 + AluJb SINE Alu 1 306 -6 2244 281 47 23 chr11 44355878 44356589 -104426883 + L1MEc LINE L1 35 772 -5624 1541 98 5 49 chr11 44356589 44356813 -104426659 + AluSg/x SINE Alu 88 301 -9 2244 281 47 23 chr11 44356813 44356973 -104426499 + L1MEc LINE L1 772 927 -5469 245 305 69 5 chr11 44357524 44357727 -104425745 - L1MEc LINE L1 -3821 2394 2179 3478 172 43 3 chr11 44358049 44358694 -104424778 + LTR51 LTR ERV1 1 671 0 317 270 50 10 chr11 44358895 44358995 -104424477 - L2 LINE L2 0 3313 3210 585 332 125 19 chr11 44358995 44359411 -104424061 - L1MEc LINE L1 -4678 1718 1259 263 179 15 0 chr11 44359475 44359542 -104423930 + (TA)n Simple_repeat Simple_repeat 2 69 0 395 309 70 62 chr11 44359717 44359801 -104423671 - L1MEc LINE L1 -5191 1014 932 2096 138 0 3 chr11 44359801 44360106 -104423366 - AluSg SINE Alu -6 304 1 395 309 70 62 chr11 44360106 44360503 -104422969 - L1MEc LINE L1 -5273 932 529 201 108 0 0 chr11 44360603 44360640 -104422832 + (CAGA)n Simple_repeat Simple_repeat 1 37 0 207 139 0 0 chr11 44361454 44361490 -104421982 + (TG)n Simple_repeat Simple_repeat 2 37 0 235 317 0 0 chr11 44362430 44362531 -104420941 + A-rich Low_complexity Low_complexity 1 101 0 273 297 40 10 chr11 44364144 44364245 -104419227 + L2 LINE L2 3168 3271 -1 259 191 60 0 chr11 44364542 44364626 -104418846 + (TCTA)n Simple_repeat Simple_repeat 4 92 0 203 295 32 0 chr11 44364672 44364767 -104418705 + (TA)n Simple_repeat Simple_repeat 2 99 0 26 30 0 0 chr11 44365418 44365451 -104418021 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr11 44365563 44365592 -104417880 + AT_rich Low_complexity Low_complexity 1 29 0 183 321 86 12 chr11 44365597 44365678 -104417794 + L2 LINE L2 2926 3012 -260 30 27 0 0 chr11 44366194 44366231 -104417241 + AT_rich Low_complexity Low_complexity 1 37 0 1678 178 31 7 chr11 44366312 44366599 -104416873 - AluJb SINE Alu -18 294 1 289 303 78 31 chr11 44366644 44367027 -104416445 - L1MC5 LINE L1 -225 7736 7336 257 308 8 68 chr11 44369007 44369124 -104414348 + MIR SINE MIR 82 191 -71 2276 75 0 31 chr11 44369279 44369598 -104413874 - AluY SINE Alu -2 309 1 201 39 0 0 chr11 44370380 44370406 -104413066 + (TTTTTA)n Simple_repeat Simple_repeat 4 29 0 1429 191 16 40 chr11 44370611 44370751 -104412721 + AluJo SINE Alu 1 143 -169 2321 107 11 8 chr11 44370751 44371105 -104412367 - THE1A LTR MaLR 0 355 1 1429 191 16 40 chr11 44371105 44371268 -104412204 + AluJo SINE Alu 143 297 -15 514 330 47 43 chr11 44371507 44371786 -104411686 + L2 LINE L2 2583 2862 -452 1239 108 0 47 chr11 44371892 44372105 -104411367 - L1PA13 LINE L1 0 6163 5961 217 154 0 58 chr11 44373788 44373840 -104409632 + (CATATA)n Simple_repeat Simple_repeat 3 51 0 199 305 16 78 chr11 44374010 44374138 -104409334 - MER5A DNA MER1_type -23 166 47 1745 159 98 17 chr11 44374524 44374883 -104408589 - MLT1B LTR MaLR -2 388 1 32 0 0 0 chr11 44374938 44374970 -104408502 + AT_rich Low_complexity Low_complexity 1 32 0 624 27 0 0 chr11 44375199 44375273 -104408199 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 495 297 74 39 chr11 44375398 44375627 -104407845 - MIR SINE MIR -14 248 12 3286 152 10 0 chr11 44375916 44376437 -104407035 - MER1A DNA MER1_type -1 526 1 2178 98 11 0 chr11 44376882 44377168 -104406304 + AluSx SINE Alu 7 295 -17 1292 206 157 38 chr11 44378417 44378868 -104404604 + MLT1D LTR MaLR 1 505 0 21 0 0 0 chr11 44379487 44379508 -104403964 + AT_rich Low_complexity Low_complexity 1 21 0 333 354 39 43 chr11 44380619 44380893 -104402579 + L2 LINE L2 2771 3058 -214 1689 173 0 3 chr11 44381243 44381552 -104401920 - AluSx SINE Alu 0 308 1 426 339 60 6 chr11 44381627 44381810 -104401662 + MIR SINE MIR 13 205 -57 5297 195 59 7 chr11 44381942 44383659 -104399813 - L1MC1 LINE L1 -18 6315 4526 198 313 52 21 chr11 44384157 44384253 -104399219 - MIR SINE MIR -78 184 86 180 152 0 0 chr11 44384295 44384328 -104399144 + CT-rich Low_complexity Low_complexity 2 34 0 286 219 14 14 chr11 44384411 44384484 -104398988 + MER103 DNA DNA 31 103 -63 285 254 28 0 chr11 44385672 44385743 -104397729 + MER116 DNA Mariner 3 75 -5 13667 230 35 23 chr11 44386208 44390165 -104393307 - L1PA12 LINE L1 -744 6053 2083 414 57 0 0 chr11 44390180 44390233 -104393239 + (TG)n Simple_repeat Simple_repeat 2 54 0 1371 207 0 26 chr11 44390238 44390508 -104392964 - AluJo SINE Alu -49 263 1 1394 198 9 27 chr11 44390508 44390842 -104392630 - L1PA12 LINE L1 -4711 2076 1749 2521 74 0 0 chr11 44390916 44391226 -104392246 - AluY SINE Alu 0 311 2 1839 147 76 34 chr11 44391257 44391637 -104391835 + Charlie1b DNA MER1_type 1 396 -127 1973 239 28 4 chr11 44391648 44391956 -104391516 - L1PA12 LINE L1 -5026 1761 1437 230 71 0 24 chr11 44391956 44391998 -104391474 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 1973 239 28 4 chr11 44391998 44392157 -104391315 - L1PA12 LINE L1 -5350 1437 1283 * 2139 322 54 26 chr11 44392127 44392904 -104390568 - L1PA12 LINE L1 -5988 799 1 24 0 0 0 chr11 44393052 44393076 -104390396 + AT_rich Low_complexity Low_complexity 1 24 0 255 251 22 0 chr11 44393503 44393570 -104389902 + MIR SINE MIR 84 140 -68 409 283 35 0 chr11 44394684 44394829 -104388643 + MER103 DNA DNA 17 166 0 384 385 27 23 chr11 44395714 44395974 -104387498 - L2 LINE L2 -474 2840 2580 2431 50 20 0 chr11 44396937 44397234 -104386238 + AluY SINE Alu 1 303 -8 234 0 0 0 chr11 44398064 44398090 -104385382 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1079 226 109 44 chr11 44398233 44398663 -104384809 + MLT1C LTR MaLR 6 463 -4 1970 142 0 0 chr11 44398713 44399022 -104384450 - AluSx SINE Alu 0 311 3 543 334 28 14 chr11 44400620 44400845 -104382627 - MIR SINE MIR 0 262 35 307 319 31 62 chr11 44401229 44401389 -104382083 + MIR SINE MIR 57 211 -51 201 74 0 0 chr11 44402490 44402517 -104380955 + (TTTTA)n Simple_repeat Simple_repeat 1 27 0 6012 108 9 0 chr11 44402741 44404053 -104379419 - L1PA8 LINE L1 -2 6170 4856 1459 207 33 37 chr11 44404113 44404413 -104379059 + AluJo SINE Alu 3 301 -11 227 333 175 0 chr11 44405496 44405616 -104377856 - L2 LINE L2 -3 3269 3129 237 239 11 120 chr11 44405730 44405822 -104377650 - L2 LINE L2 0 3272 3191 218 298 58 84 chr11 44405820 44406011 -104377461 - L2 LINE L2 -36 3277 3092 * 315 0 0 0 chr11 44406560 44406595 -104376877 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1230 201 7 71 chr11 44406597 44406906 -104376566 - AluJo SINE Alu -23 289 1 462 278 139 6 chr11 44409399 44409572 -104373900 - L1M4 LINE L1 -1501 4645 4450 906 163 42 12 chr11 44409579 44409745 -104373727 - MER6B DNA MER2_type -39 171 1 922 262 84 17 chr11 44409803 44410277 -104373195 - L1M4 LINE L1 -1736 4410 3905 1453 253 67 34 chr11 44410280 44411177 -104372295 - L1ME LINE L1 -4135 1945 851 2172 116 3 3 chr11 44411177 44411478 -104371994 - AluSx SINE Alu -11 301 1 1453 253 67 34 chr11 44411478 44411612 -104371860 - L1ME LINE L1 -5229 851 723 473 323 61 50 chr11 44411608 44412424 -104371048 - L1ME LINE L1 -5235 835 12 * 1042 300 70 43 chr11 44413157 44413550 -104369922 - LTR16A LTR ERVL 0 457 49 2235 151 9 86 chr11 44413550 44413953 -104369519 - MSTC LTR MaLR 0 428 64 1983 143 3 3 chr11 44413953 44414254 -104369218 + AluJb SINE Alu 1 301 -11 2235 151 9 86 chr11 44414254 44414314 -104369158 - MSTC LTR MaLR -364 64 1 1042 300 70 43 chr11 44414314 44414360 -104369112 - LTR16A LTR ERVL -408 49 6 180 200 40 60 chr11 44414382 44414432 -104369040 + MIR SINE MIR 123 171 -91 304 93 67 0 chr11 44414454 44414529 -104368943 + (TA)n Simple_repeat Simple_repeat 2 81 0 204 196 59 0 chr11 44414820 44414871 -104368601 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 243 125 0 0 chr11 44415077 44415117 -104368355 + (GA)n Simple_repeat Simple_repeat 2 41 0 231 250 0 0 chr11 44415429 44415489 -104367983 + (TG)n Simple_repeat Simple_repeat 1 60 0 434 304 83 6 chr11 44415855 44416023 -104367449 + MLT1K LTR MaLR 1 181 -407 543 335 60 39 chr11 44416050 44416331 -104367141 + MLT1K LTR MaLR 238 524 -64 303 264 34 91 chr11 44416579 44416787 -104366685 - L1ME LINE L1 -331 5790 5595 2422 181 39 8 chr11 44416789 44417308 -104366164 - L1MA9 LINE L1 -2 6310 5776 21 0 0 0 chr11 44417315 44417336 -104366136 + AT_rich Low_complexity Low_complexity 1 21 0 258 0 0 67 chr11 44417353 44417398 -104366074 + (TA)n Simple_repeat Simple_repeat 2 43 0 430 176 0 0 chr11 44417414 44417493 -104365979 - L1M4 LINE L1 -393 5781 5703 223 343 101 26 chr11 44417863 44418131 -104365341 - L2 LINE L2 -405 2909 2622 310 303 141 40 chr11 44418804 44419002 -104364470 + MIR SINE MIR 10 227 -35 279 114 0 0 chr11 44419353 44419397 -104364075 + (CA)n Simple_repeat Simple_repeat 2 45 0 2550 107 3 8 chr11 44419828 44420194 -104363278 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr11 44420595 44420616 -104362856 + AT_rich Low_complexity Low_complexity 1 21 0 333 241 80 44 chr11 44421010 44421147 -104362325 - MER112 DNA MER1_type -102 158 17 247 136 0 0 chr11 44421239 44421283 -104362189 - L1PA14 LINE L1 -4 6157 6114 1879 175 46 36 chr11 44421283 44421826 -104361646 - MLT2A2 LTR ERVL 0 554 1 956 92 21 0 chr11 44421826 44421968 -104361504 - L1PA14 LINE L1 -43 6118 5974 356 40 20 0 chr11 44422089 44422139 -104361333 + (TTG)n Simple_repeat Simple_repeat 1 51 0 333 0 0 0 chr11 44422195 44422232 -104361240 + (CA)n Simple_repeat Simple_repeat 2 38 0 256 258 165 0 chr11 44423198 44423295 -104360177 - MIR SINE MIR -10 252 140 2196 101 3 16 chr11 44423359 44423666 -104359806 - AluSp SINE Alu -10 303 1 273 372 0 11 chr11 44423716 44423810 -104359662 - MER5A DNA MER1_type -93 96 4 26 0 0 0 chr11 44423925 44423951 -104359521 + AT_rich Low_complexity Low_complexity 1 26 0 207 161 0 0 chr11 44424883 44424914 -104358558 + (TG)n Simple_repeat Simple_repeat 2 32 0 272 261 63 42 chr11 44425032 44425174 -104358298 + MLT1I LTR MaLR 264 408 -1 197 349 70 59 chr11 44425320 44425592 -104357880 + L3 LINE CR1 1179 1453 -124 2234 117 0 0 chr11 44425645 44425943 -104357529 + AluSq SINE Alu 1 298 -15 363 284 114 62 chr11 44426034 44426253 -104357219 + MIR SINE MIR 32 262 0 1000 239 89 96 chr11 44426506 44427189 -104356283 + MLT1E2 LTR MaLR 1 624 0 1659 172 10 38 chr11 44427959 44428283 -104355189 + AluJb SINE Alu 1 316 0 454 353 25 11 chr11 44429664 44430024 -104353448 - L1ME4a LINE L1 -202 5919 5555 180 158 0 0 chr11 44430164 44430202 -104353270 + (TAA)n Simple_repeat Simple_repeat 2 39 0 254 324 52 69 chr11 44430480 44430653 -104352819 - MIR SINE MIR -61 201 32 213 65 0 0 chr11 44431516 44431547 -104351925 + (T)n Simple_repeat Simple_repeat 1 31 0 216 222 44 56 chr11 44431938 44432028 -104351444 - MIR SINE MIR -13 249 161 2029 284 11 13 chr11 44432043 44432578 -104350894 - MLT1F LTR MaLR -6 536 3 1826 88 4 0 chr11 44432999 44433249 -104350223 - L1PA6 LINE L1 0 6154 5904 189 250 0 0 chr11 44433433 44433473 -104349999 + L2 LINE L2 3264 3303 -10 291 274 0 40 chr11 44434546 44434670 -104348802 + MLT1L LTR MaLR 397 515 -100 289 330 228 14 chr11 44435205 44435420 -104348052 - MIR SINE MIR 0 262 2 25 31 0 0 chr11 44436968 44437000 -104346472 + AT_rich Low_complexity Low_complexity 1 32 0 617 317 20 45 chr11 44437168 44437438 -104346034 - MIR SINE MIR 0 262 1 344 364 80 34 chr11 44437500 44437739 -104345733 - L3 LINE CR1 -428 1149 900 2061 111 4 0 chr11 44438729 44439008 -104344464 + AluSp SINE Alu 24 303 -10 443 301 86 34 chr11 44441109 44441318 -104342154 + L2 LINE L2 3094 3313 0 475 202 0 0 chr11 44441665 44441764 -104341708 + MER96B DNA MER1_type? 14 112 -305 637 84 0 0 chr11 44441787 44441870 -104341602 - LTR5 LTR ERVK -91 878 796 203 56 56 0 chr11 44441870 44441906 -104341566 + T-rich Low_complexity Low_complexity 2 39 0 6669 60 4 43 chr11 44441906 44442884 -104340588 - SVA Other Other -17 1369 430 1640 97 13 74 chr11 44443291 44443753 -104339719 - SVA Other Other -520 866 433 5291 74 36 54 chr11 44443857 44444684 -104338788 - SVA Other Other -518 868 57 381 22 0 0 chr11 44444684 44444730 -104338742 + (GGGAGA)n Simple_repeat Simple_repeat 1 46 0 649 169 7 14 chr11 44444731 44444873 -104338599 + MER96B DNA MER1_type? 98 238 -179 392 206 14 138 chr11 44445790 44446008 -104337464 + L1MC4 LINE L1 7836 8026 -16 22 0 0 0 chr11 44446266 44446288 -104337184 + AT_rich Low_complexity Low_complexity 1 22 0 323 361 78 10 chr11 44447789 44447994 -104335478 - L3 LINE CR1 -126 1451 1233 2981 178 26 0 chr11 44448593 44449165 -104334307 + L1PB4 LINE L1 5569 6155 -1 298 297 27 118 chr11 44449415 44449711 -104333761 + MLT1J LTR MaLR 127 395 -116 22 35 0 0 chr11 44449875 44449904 -104333568 + AT_rich Low_complexity Low_complexity 1 29 0 2048 244 2 7 chr11 44450348 44450892 -104332580 + L1 LINE L1 3576 4116 -2030 2053 127 0 0 chr11 44451210 44451494 -104331978 + AluSx SINE Alu 16 299 -13 217 222 0 0 chr11 44453835 44453880 -104329592 + (TG)n Simple_repeat Simple_repeat 2 46 0 1993 123 3 3 chr11 44453913 44454245 -104329227 + AluSq SINE Alu 1 332 0 203 162 0 0 chr11 44454554 44454591 -104328881 + A-rich Low_complexity Low_complexity 3 39 0 234 314 50 29 chr11 44454606 44454845 -104328627 - L1ME4a LINE L1 -169 5952 5709 40 37 0 0 chr11 44455237 44455291 -104328181 + AT_rich Low_complexity Low_complexity 1 54 0 549 311 58 40 chr11 44455329 44455657 -104327815 - MLT1I LTR MaLR -7 402 69 24 32 0 0 chr11 44456742 44456773 -104326699 + AT_rich Low_complexity Low_complexity 1 31 0 1223 207 29 88 chr11 44458138 44458549 -104324923 - MLT1B LTR MaLR 0 390 4 1413 207 44 26 chr11 44458764 44459286 -104324186 + MLT1E1 LTR MaLR 22 611 -43 311 275 180 24 chr11 44459720 44459887 -104323585 + L2 LINE L2 3118 3310 -3 480 93 67 0 chr11 44460409 44460458 -104323014 + MADE1 DNA Mariner 1 58 -22 203 61 30 0 chr11 44460458 44460491 -104322981 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 480 93 67 0 chr11 44460491 44460516 -104322956 + MADE1 DNA Mariner 58 80 0 335 181 0 24 chr11 44461071 44461154 -104322318 + CT-rich Low_complexity Low_complexity 2 82 0 2230 90 0 0 chr11 44461793 44462120 -104321352 + AluY SINE Alu 4 330 0 250 354 41 48 chr11 44462391 44462538 -104320934 + L2 LINE L2 3123 3268 -4 406 143 22 0 chr11 44462646 44462737 -104320735 + (TGGA)n Simple_repeat Simple_repeat 4 96 0 200 363 48 0 chr11 44463434 44463580 -104319892 - L2 LINE L2 -1283 2031 1879 382 174 0 0 chr11 44463602 44463671 -104319801 + L1PB4 LINE L1 4490 4558 -1588 866 110 0 0 chr11 44463671 44463789 -104319683 - AluY SINE Alu -3 308 191 3883 197 35 15 chr11 44463789 44465370 -104318102 + L1PB4 LINE L1 4549 6153 -3 2427 66 0 10 chr11 44465381 44465686 -104317786 + AluY SINE Alu 1 302 -9 1867 163 3 0 chr11 44465938 44466227 -104317245 + AluSx SINE Alu 6 295 -17 486 231 142 0 chr11 44466271 44466405 -104317067 + MIR SINE MIR 110 262 0 265 295 0 0 chr11 44466951 44467012 -104316460 + MIR SINE MIR 61 121 -87 1669 201 0 19 chr11 44467798 44468107 -104315365 + AluJb SINE Alu 1 303 -9 27 49 0 0 chr11 44468397 44468438 -104315034 + AT_rich Low_complexity Low_complexity 1 41 0 412 379 57 25 chr11 44468713 44469191 -104314281 + LTR67 LTR ERVL 50 542 -15 1321 199 23 15 chr11 44469390 44469651 -104313821 + Tigger7 DNA MER2_type 1 263 -2224 346 217 120 0 chr11 44469644 44469736 -104313736 + Tigger7 DNA MER2_type 2484 2586 -1 * 443 305 39 13 chr11 44471577 44471731 -104311741 - MIR SINE MIR -102 160 3 258 188 72 14 chr11 44472295 44472364 -104311108 + (CAGAGA)n Simple_repeat Simple_repeat 1 73 0 299 272 15 44 chr11 44472584 44472720 -104310752 + GA-rich Low_complexity Low_complexity 1 132 0 2073 139 3 7 chr11 44472802 44473103 -104310369 - AluSx SINE Alu -12 300 1 400 308 6 26 chr11 44473103 44473195 -104310277 + MIR SINE MIR 119 211 -51 201 74 0 0 chr11 44473195 44473222 -104310250 + (CA)n Simple_repeat Simple_repeat 1 27 0 400 308 6 26 chr11 44473222 44473274 -104310198 + MIR SINE MIR 211 262 0 3610 158 29 11 chr11 44473780 44474478 -104308994 - MER50 LTR ERV1 -24 710 1 22 0 0 0 chr11 44474583 44474605 -104308867 + AT_rich Low_complexity Low_complexity 1 22 0 385 346 85 55 chr11 44475169 44475568 -104307904 + L2 LINE L2 2847 3257 -15 232 303 0 11 chr11 44476026 44476115 -104307357 - MER112 DNA MER1_type -8 252 165 360 353 35 6 chr11 44476288 44476461 -104307011 - MER5B DNA MER1_type 0 178 1 323 145 0 29 chr11 44476753 44476822 -104306650 - L1PA16 LINE L1 -16 6150 6084 2034 189 39 50 chr11 44476927 44477452 -104306020 - L1MA9 LINE L1 0 6312 5783 2302 106 6 0 chr11 44477452 44477763 -104305709 - AluSq SINE Alu 0 313 1 2034 189 39 50 chr11 44477763 44477804 -104305668 - L1MA9 LINE L1 -529 5783 5783 245 29 29 0 chr11 44477804 44477838 -104305634 + (TG)n Simple_repeat Simple_repeat 2 36 0 2034 189 39 50 chr11 44477838 44477912 -104305560 - L1MA9 LINE L1 -528 5784 5711 329 243 187 9 chr11 44478266 44478373 -104305099 + L2 LINE L2 3147 3272 0 313 264 186 21 chr11 44479837 44479977 -104303495 - MER45A DNA AcHobo -1 177 15 2609 110 3 3 chr11 44480320 44480684 -104302788 + THE1B LTR MaLR 1 364 0 317 136 51 0 chr11 44481833 44481892 -104301580 + MSTD LTR MaLR 292 353 -43 477 121 0 0 chr11 44481897 44481963 -104301509 + AluS SINE Alu 1 66 -247 709 179 15 51 chr11 44484567 44484762 -104298710 - MER53 DNA DNA -1 188 1 288 180 16 0 chr11 44484764 44484825 -104298647 - L1MC4 LINE L1 -59 7983 7922 1567 166 58 60 chr11 44484835 44485182 -104298290 + MSTD LTR MaLR 1 348 -48 2196 111 10 3 chr11 44485182 44485480 -104297992 + AluSq SINE Alu 1 300 -13 1567 166 58 60 chr11 44485480 44485529 -104297943 + MSTD LTR MaLR 348 396 0 662 257 122 4 chr11 44485609 44485854 -104297618 - L1MC4 LINE L1 -222 7820 7547 * 3045 132 31 2 chr11 44485846 44486392 -104297080 - L1PA13 LINE L1 -348 5815 5254 2404 118 8 0 chr11 44486395 44486758 -104296714 + L1PA13 LINE L1 5784 6149 -14 704 217 0 0 chr11 44486760 44486903 -104296569 - L1MC4 LINE L1 -484 7558 7416 789 228 0 6 chr11 44487233 44487400 -104296072 + FRAM SINE Alu 1 166 -10 1955 131 20 26 chr11 44488258 44488564 -104294908 - AluSx SINE Alu -8 304 1 2240 123 7 0 chr11 44488948 44489257 -104294215 - AluSx SINE Alu -1 311 1 270 294 126 14 chr11 44492313 44492456 -104291016 + L3b LINE CR1 1239 1397 -186 382 309 39 11 chr11 44492617 44492795 -104290677 - MER117 DNA MER1_type -7 190 8 210 208 0 21 chr11 44493022 44493070 -104290402 + A-rich Low_complexity Low_complexity 2 48 0 22 0 0 0 chr11 44494128 44494150 -104289322 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr11 44494231 44494254 -104289218 + (A)n Simple_repeat Simple_repeat 1 23 0 803 311 8 4 chr11 44494332 44494570 -104288902 + MIR SINE MIR 2 240 -22 752 294 42 35 chr11 44496078 44496391 -104287081 - L2 LINE L2 0 3313 2999 301 167 74 0 chr11 44496427 44496481 -104286991 - MIR SINE MIR -86 176 119 395 164 214 50 chr11 44496496 44496655 -104286817 + MER53 DNA DNA 2 186 -3 21 36 0 0 chr11 44497304 44497332 -104286140 + AT_rich Low_complexity Low_complexity 1 28 0 1681 173 8 23 chr11 44497965 44498352 -104285120 + L1MD1 LINE L1 5300 5680 -562 2245 156 13 5 chr11 44498377 44498768 -104284704 - L1PA15 LINE L1 -4 6161 5768 2687 122 22 28 chr11 44498773 44499095 -104284377 - L1P4 LINE L1 -352 5813 5491 2423 72 10 0 chr11 44499095 44499399 -104284073 - AluY SINE Alu -4 307 1 2687 122 22 28 chr11 44499399 44499597 -104283875 - L1P4 LINE L1 -674 5491 5159 1164 146 7 114 chr11 44499583 44499891 -104283581 + L1MD1 LINE L1 5698 5972 -270 * 249 370 42 0 chr11 44500094 44500213 -104283259 + MIR3 SINE MIR 82 205 -3 346 242 0 22 chr11 44501102 44501193 -104282279 - MIR SINE MIR -2 260 172 323 326 0 43 chr11 44501376 44501517 -104281955 - L2 LINE L2 0 3313 3179 4629 297 140 38 chr11 44501757 44503107 -104280365 - L2 LINE L2 -337 2977 1766 2387 100 0 0 chr11 44503107 44503407 -104280065 - AluSg SINE Alu -10 300 1 4629 297 140 38 chr11 44503407 44504628 -104278844 - L2 LINE L2 -1548 1766 144 453 108 66 24 chr11 44504908 44505075 -104278397 + (TG)n Simple_repeat Simple_repeat 1 174 0 575 137 34 23 chr11 44505097 44505272 -104278200 + (TG)n Simple_repeat Simple_repeat 1 177 0 248 331 78 42 chr11 44507550 44507692 -104275780 + MIR SINE MIR 2 148 -114 709 296 57 17 chr11 44508214 44508444 -104275028 - MIR SINE MIR -16 246 8 510 296 90 34 chr11 44509269 44509536 -104273936 - L2 LINE L2 0 3313 3032 343 66 0 0 chr11 44509607 44509657 -104273815 + Alu SINE Alu 4 47 -255 2498 110 6 3 chr11 44510768 44511122 -104272350 + THE1A LTR MaLR 1 355 0 11096 95 5 48 chr11 44511122 44512774 -104270698 + THE1A-int LTR MaLR 1 1580 0 527 105 13 0 chr11 44512774 44512850 -104270622 + THE1A LTR MaLR 1 77 -287 1409 291 115 25 chr11 44512950 44513551 -104269921 - L2 LINE L2 -420 2894 2240 262 308 151 7 chr11 44515066 44515212 -104268260 + L3 LINE CR1 1154 1320 -257 278 301 36 0 chr11 44515245 44515328 -104268144 + MIR SINE MIR 111 196 -66 269 280 101 36 chr11 44515925 44516093 -104267379 + L3 LINE CR1 1378 1556 -21 985 252 87 50 chr11 44516121 44516298 -104267174 + MLT1D LTR MaLR 27 196 -309 2106 134 0 0 chr11 44516298 44516597 -104266875 + AluSx SINE Alu 1 299 -13 985 252 87 50 chr11 44516597 44516879 -104266593 + MLT1D LTR MaLR 196 503 -2 303 332 107 38 chr11 44517328 44517674 -104265798 - L2 LINE L2 0 3313 2944 308 374 55 0 chr11 44518373 44518536 -104264936 + MIR3 SINE MIR 37 208 0 488 305 80 44 chr11 44519214 44519463 -104264009 - MIR SINE MIR 0 262 5 1569 215 3 3 chr11 44519530 44519828 -104263644 + AluJb SINE Alu 5 302 -10 34225 100 11 14 chr11 44520094 44522431 -104261041 + L1PA6 LINE L1 11 2352 -3802 189 74 0 0 chr11 44522431 44522458 -104261014 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 34225 100 11 14 chr11 44522458 44526270 -104257202 + L1PA6 LINE L1 2352 6143 -11 1649 155 8 0 chr11 44526377 44526641 -104256831 + THE1A LTR MaLR 90 355 0 2247 98 10 10 chr11 44526698 44527005 -104256467 + AluY SINE Alu 1 307 -4 463 312 66 36 chr11 44527267 44527628 -104255844 + L1ME3A LINE L1 793 1039 -5166 375 304 12 60 chr11 44527653 44527988 -104255484 + L1ME3A LINE L1 1041 1359 -4856 857 301 30 21 chr11 44527999 44528335 -104255137 + L1ME1 LINE L1 5822 6160 -6 286 260 61 31 chr11 44528617 44528673 -104254799 + L1ME3A LINE L1 2178 2231 -3984 808 270 89 60 chr11 44528673 44529121 -104254351 - LTR16B LTR ERVL -3 461 1 286 260 61 31 chr11 44529121 44529357 -104254115 + L1ME3A LINE L1 2231 2445 -3770 2234 152 19 3 chr11 44529525 44529894 -104253578 + THE1C LTR MaLR 1 375 0 1505 259 57 49 chr11 44530080 44530933 -104252539 + L1ME3A LINE L1 4392 5251 -964 276 262 0 103 chr11 44531281 44531388 -104252084 + MLT1H LTR MaLR 454 549 0 2004 147 3 0 chr11 44532494 44532786 -104250686 - AluSg SINE Alu -17 293 1 541 298 60 57 chr11 44533057 44533322 -104250150 + MLT1H LTR MaLR 43 308 -241 236 235 118 0 chr11 44533345 44533430 -104250042 + L1ME3A LINE L1 5590 5684 -555 183 129 0 0 chr11 44533466 44533497 -104249975 + (TATG)n Simple_repeat Simple_repeat 2 32 0 650 301 37 20 chr11 44533524 44533572 -104249900 + L1ME3A LINE L1 5915 5961 -278 2423 77 0 3 chr11 44533572 44533882 -104249590 + AluY SINE Alu 1 309 -2 650 301 37 20 chr11 44533882 44534132 -104249340 + L1ME3A LINE L1 5961 6218 -21 21 57 0 0 chr11 44534898 44534933 -104248539 + AT_rich Low_complexity Low_complexity 1 35 0 1515 161 41 8 chr11 44535199 44535466 -104248006 - AluJb SINE Alu -8 304 29 2679 194 39 2 chr11 44536687 44537224 -104246248 - L1MB1 LINE L1 -24 5968 5412 308 132 0 0 chr11 44537224 44537277 -104246195 - LTR9 LTR ERV1 -559 53 1 3607 258 56 63 chr11 44537278 44539524 -104243948 - L1MB1 LINE L1 -2671 3299 1369 1970 146 0 0 chr11 44539524 44539853 -104243619 - AluSx SINE Alu 0 329 1 3607 258 56 63 chr11 44539853 44541209 -104242263 - L1MB1 LINE L1 -4601 1369 6 716 193 7 0 chr11 44541294 44541434 -104242038 + FLAM_C SINE Alu 1 141 -2 285 29 0 0 chr11 44541959 44541993 -104241479 + (TG)n Simple_repeat Simple_repeat 1 34 0 1158 204 17 0 chr11 44542776 44543011 -104240461 - L1PB4 LINE L1 -5 6151 5913 4288 181 12 4 chr11 44543116 44544055 -104239417 - L1P LINE L1 -736 5420 4474 1051 286 123 45 chr11 44544083 44545068 -104238404 + HAL1 LINE L1 833 1894 -613 504 274 46 66 chr11 44545118 44545139 -104238333 - MER63A DNA MER1_type -1478 210 190 1285 228 10 63 chr11 44545139 44545534 -104237938 + MLT1A2 LTR MaLR 1 374 0 504 274 46 66 chr11 44545534 44545709 -104237763 - MER63A DNA MER1_type -1498 190 18 347 299 20 10 chr11 44545739 44545943 -104237529 + HAL1 LINE L1 1974 2179 -328 324 281 20 59 chr11 44546092 44546170 -104237302 + L1ME LINE L1 85 156 -6267 2201 111 0 3 chr11 44546170 44546468 -104237004 - AluSg1 SINE Alu -12 297 1 324 281 20 59 chr11 44546468 44546542 -104236930 + L1ME LINE L1 156 231 -6192 941 286 53 53 chr11 44546593 44547394 -104236078 + L1ME LINE L1 1769 2751 -4371 1864 249 53 42 chr11 44547407 44548401 -104235071 + L1ME LINE L1 5171 6294 -667 195 114 0 0 chr11 44548983 44549018 -104234454 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 3166 172 13 7 chr11 44550362 44550908 -104232564 + MER44D DNA MER2_type 2 605 0 507 269 80 55 chr11 44551102 44551377 -104232095 - L2 LINE L2 -737 2577 2296 439 185 240 27 chr11 44551500 44551646 -104231826 - MER5A DNA MER1_type 0 189 13 277 287 11 0 chr11 44551663 44551750 -104231722 - L2 LINE L2 -1186 2128 2041 301 315 79 15 chr11 44551756 44551959 -104231513 - L1M4 LINE L1 -2275 3871 3656 39 0 0 0 chr11 44551961 44552000 -104231472 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr11 44552369 44552391 -104231081 + AT_rich Low_complexity Low_complexity 1 22 0 2036 101 37 14 chr11 44552722 44553018 -104230454 - AluSp SINE Alu -10 303 1 905 163 64 35 chr11 44553349 44553552 -104229920 + MER3 DNA MER1_type 1 209 0 21 0 0 0 chr11 44553574 44553595 -104229877 + AT_rich Low_complexity Low_complexity 1 21 0 1460 243 40 27 chr11 44553616 44554061 -104229411 - MLT1C LTR MaLR 0 467 17 926 339 28 18 chr11 44554558 44555015 -104228457 + LTR16B LTR ERVL 3 464 0 952 124 37 19 chr11 44555267 44555428 -104228044 - AluY SINE Alu 0 311 148 889 48 79 8 chr11 44555557 44555683 -104227789 + MER85 DNA T2_type 1 135 -4 247 310 70 39 chr11 44556288 44556546 -104226926 - HAL1 LINE L1 -871 1636 1371 2395 128 8 16 chr11 44557416 44557791 -104225681 + THE1C LTR MaLR 4 375 0 345 319 44 0 chr11 44557879 44558014 -104225458 - MER20B DNA MER1_type -619 164 24 316 317 89 22 chr11 44558570 44558750 -104224722 - MLT1I LTR MaLR -127 282 91 330 122 0 0 chr11 44558754 44558803 -104224669 - MADE1 DNA Mariner 0 80 32 258 59 0 0 chr11 44558814 44558848 -104224624 + MADE1 DNA Mariner 28 61 -19 2101 122 3 0 chr11 44559001 44559297 -104224175 + AluSp SINE Alu 1 297 -16 1837 202 57 25 chr11 44559964 44560400 -104223072 - MLT1C LTR MaLR -17 450 1 1099 141 66 0 chr11 44560597 44560810 -104222662 + L1MA6 LINE L1 6074 6300 0 312 320 57 39 chr11 44560842 44561173 -104222299 - L1MC/D LINE L1 -289 5832 5491 1167 235 54 25 chr11 44561197 44561550 -104221922 + MLT1A1 LTR MaLR 1 363 -2 1340 219 79 31 chr11 44561739 44562183 -104221289 - MLT1C LTR MaLR -2 465 1 365 221 7 143 chr11 44562800 44562940 -104220532 - L2 LINE L2 -1 3312 3192 181 340 52 31 chr11 44563455 44563552 -104219920 + L2 LINE L2 3197 3295 -18 4409 161 42 16 chr11 44563553 44564358 -104219114 - LTR1B LTR ERV1 0 826 1 824 253 99 37 chr11 44564484 44564887 -104218585 + MSTC LTR MaLR 1 428 0 2158 228 75 35 chr11 44565195 44565431 -104218041 + MLT1E LTR MaLR 1 226 -367 3965 167 83 14 chr11 44565431 44566204 -104217268 - LTR1B LTR ERV1 0 826 1 2158 228 75 35 chr11 44566204 44566537 -104216935 + MLT1E LTR MaLR 226 593 0 314 281 66 16 chr11 44566537 44566657 -104216815 + MER117 DNA MER1_type 23 148 -49 392 335 12 6 chr11 44566905 44567078 -104216394 - Charlie8 DNA MER1_type -2148 269 96 1961 142 0 36 chr11 44567104 44567413 -104216059 - AluSx SINE Alu -14 298 1 244 266 150 44 chr11 44568509 44568622 -104214850 + MIR SINE MIR 36 160 -102 334 309 130 12 chr11 44570366 44570528 -104212944 - MIR SINE MIR 0 262 82 429 236 67 84 chr11 44570875 44571053 -104212419 - MLT1J LTR MaLR -200 311 137 32154 81 6 12 chr11 44571355 44575425 -104208047 + L1PA6 LINE L1 1 4091 -2378 369 0 0 0 chr11 44575425 44575466 -104208006 + (TA)n Simple_repeat Simple_repeat 2 42 0 32154 81 6 12 chr11 44575466 44576485 -104206987 + L1PA6 LINE L1 4091 5114 -1355 2272 87 3 0 chr11 44576485 44576773 -104206699 + AluY SINE Alu 1 289 -22 32154 81 6 12 chr11 44576773 44577116 -104206356 + L1PA6 LINE L1 5114 6469 0 562 181 1 43 chr11 44577303 44577435 -104206037 - MLT1C LTR MaLR -6 461 245 219 189 0 0 chr11 44579252 44579305 -104204167 + (TA)n Simple_repeat Simple_repeat 1 53 0 219 393 8 0 chr11 44579662 44579784 -104203688 - L2 LINE L2 -263 3009 2887 499 330 18 13 chr11 44580819 44581046 -104202426 - L1MC/D LINE L1 -2064 5744 5517 241 45 23 23 chr11 44581828 44581872 -104201600 + (TTG)n Simple_repeat Simple_repeat 3 46 0 206 342 184 26 chr11 44581878 44582030 -104201442 + MER5A DNA MER1_type 12 187 -2 * 397 305 0 0 chr11 44581936 44582031 -104201441 - MER5A DNA MER1_type -79 110 16 299 104 0 0 chr11 44582324 44582372 -104201100 + MADE1 DNA Mariner 1 48 -32 * 1060 177 125 117 chr11 44582368 44582675 -104200797 - MLT1B LTR MaLR -36 354 41 2157 99 0 0 chr11 44582675 44582988 -104200484 - AluSx SINE Alu 0 313 1 1060 177 125 117 chr11 44582988 44583030 -104200442 - MLT1B LTR MaLR -349 41 1 259 240 79 26 chr11 44583444 44583612 -104199860 - LTR41 LTR ERVL -8 787 608 1274 56 0 0 chr11 44583846 44584006 -104199466 + L1PA5 LINE L1 5989 6148 -6 229 123 18 18 chr11 44584015 44584072 -104199400 + A-rich Low_complexity Low_complexity 4 60 0 649 189 95 6 chr11 44584097 44584266 -104199206 - MER53 DNA DNA -3 186 3 441 222 70 70 chr11 44584269 44584440 -104199032 - LTR41 LTR ERVL -596 177 7 562 288 42 45 chr11 44584513 44584828 -104198644 + MLT1I LTR MaLR 68 360 -49 921 254 38 0 chr11 44585131 44585340 -104198132 - MER58A DNA MER1_type -6 218 2 372 310 32 19 chr11 44585355 44585513 -104197959 + L2 LINE L2 2645 2804 -510 2681 135 47 11 chr11 44586043 44586510 -104196962 + LTR19A LTR ERV1 3 486 0 817 286 70 72 chr11 44586552 44587021 -104196451 + L2 LINE L2 2846 3313 0 209 309 0 0 chr11 44587979 44588034 -104195438 + L2 LINE L2 3213 3267 -5 1255 221 130 27 chr11 44588075 44588217 -104195255 - MLT1A1 LTR MaLR 0 365 239 2171 127 0 0 chr11 44588217 44588516 -104194956 - AluSg SINE Alu -11 299 1 1255 221 130 27 chr11 44588516 44588704 -104194768 - MLT1A1 LTR MaLR -126 239 1 23 0 0 0 chr11 44589871 44589894 -104193578 + AT_rich Low_complexity Low_complexity 1 23 0 305 29 0 0 chr11 44590079 44590114 -104193358 + (A)n Simple_repeat Simple_repeat 1 35 0 22 0 0 0 chr11 44590171 44590193 -104193279 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 44590573 44590594 -104192878 + AT_rich Low_complexity Low_complexity 1 21 0 847 216 89 108 chr11 44590844 44591214 -104192258 + MLT1A1 LTR MaLR 3 365 0 183 268 21 62 chr11 44591388 44591485 -104191987 - L2 LINE L2 -77 3236 3144 192 326 132 39 chr11 44591565 44591694 -104191778 - L2 LINE L2 0 3313 3173 277 241 53 145 chr11 44592014 44592242 -104191230 - MLT1L LTR MaLR -221 394 188 215 328 0 0 chr11 44592602 44592660 -104190812 - L2 LINE L2 -10 3262 3205 2151 136 3 69 chr11 44592828 44593218 -104190254 + THE1B LTR MaLR 1 364 0 302 313 80 35 chr11 44593410 44593611 -104189861 + L3 LINE CR1 195 404 -1173 1683 154 193 14 chr11 44594394 44594757 -104188715 + MSTA LTR MaLR 1 428 0 5401 107 36 26 chr11 44594827 44595939 -104187533 + pTR5 LTR ERV1 743 2025 -413 361 253 10 0 chr11 44595939 44596038 -104187434 + LTR30 LTR ERV1 544 643 -79 1646 81 5 5 chr11 44596040 44596261 -104187211 + pTR5 LTR ERV1 172 392 -2046 184 313 38 12 chr11 44596425 44596505 -104186967 + MIR SINE MIR 74 155 -107 2002 132 24 29 chr11 44596612 44596953 -104186519 - THE1C LTR MaLR -36 339 1 9428 136 48 7 chr11 44596953 44598470 -104185002 - THE1C-int LTR MaLR 0 1580 1 1935 152 29 35 chr11 44598470 44598845 -104184627 - THE1C LTR MaLR 0 375 3 469 244 11 0 chr11 44599021 44599111 -104184361 - MER5A DNA MER1_type -88 101 11 26 50 0 0 chr11 44600249 44600289 -104183183 + AT_rich Low_complexity Low_complexity 1 40 0 2772 234 30 32 chr11 44600529 44601066 -104182406 - L1MD1 LINE L1 0 6242 5706 2088 108 16 13 chr11 44601066 44601373 -104182099 + AluSx SINE Alu 1 308 -4 2772 234 30 32 chr11 44601373 44601611 -104181861 - L1MD1 LINE L1 -536 5706 5469 270 208 4 43 chr11 44601652 44601747 -104181725 - AluSp SINE Alu -123 180 135 805 195 13 58 chr11 44601747 44601973 -104181499 - L1MD1 LINE L1 -773 5469 5254 183 42 0 0 chr11 44601981 44602005 -104181467 + (TTG)n Simple_repeat Simple_repeat 2 25 0 814 134 8 0 chr11 44602005 44602124 -104181348 - AluJb SINE Alu -192 120 1 3683 265 60 51 chr11 44602125 44602228 -104181244 - L1MD1 LINE L1 -886 5260 5159 2059 120 7 3 chr11 44602228 44602527 -104180945 - AluSq SINE Alu -13 300 1 3683 265 60 51 chr11 44602527 44602686 -104180786 - L1MD1 LINE L1 -987 5159 5003 279 0 0 0 chr11 44602686 44602717 -104180755 + (TG)n Simple_repeat Simple_repeat 2 32 0 3683 265 60 51 chr11 44602717 44604306 -104179166 - L1MD1 LINE L1 -1143 5003 3392 670 242 36 52 chr11 44604384 44604431 -104179041 + L1ME2 LINE L1 5912 5958 -206 2347 75 23 3 chr11 44604431 44604736 -104178736 + AluY SINE Alu 1 311 0 670 242 36 52 chr11 44604736 44604936 -104178536 + L1ME2 LINE L1 5958 6155 -9 2031 220 7 36 chr11 44604997 44605546 -104177926 - L1MA7 LINE L1 0 6291 5759 9326 230 14 4 chr11 44605631 44608654 -104174818 - L1PA15 LINE L1 -6 6810 3728 2204 130 40 11 chr11 44608660 44609014 -104174458 - THE1B LTR MaLR 0 364 1 10158 119 16 27 chr11 44609014 44610612 -104172860 - THE1B-int LTR MaLR 0 1580 1 2190 135 30 28 chr11 44610612 44610703 -104172769 - THE1B LTR MaLR 0 364 275 3608 142 91 12 chr11 44610703 44611342 -104172130 + LTR8 LTR ERV1 1 689 -2 2190 135 30 28 chr11 44611342 44611613 -104171859 - THE1B LTR MaLR -89 275 1 472 211 0 0 chr11 44611617 44611712 -104171760 - L1 LINE L1 -3075 3071 2977 4524 234 22 21 chr11 44611816 44613886 -104169586 - L1PA15 LINE L1 -3454 3343 1255 5571 187 49 55 chr11 44614092 44616030 -104167442 - L1MA7 LINE L1 -514 5777 3857 22 0 0 0 chr11 44616117 44616139 -104167333 + AT_rich Low_complexity Low_complexity 1 22 0 3652 96 7 36 chr11 44616141 44616716 -104166756 - L1PB1 LINE L1 -4 6147 5590 1233 167 3 2 chr11 44616716 44616941 -104166531 - L1M1 LINE L1 -470 5681 5456 345 47 0 0 chr11 44616967 44617010 -104166462 + (TG)n Simple_repeat Simple_repeat 2 44 0 29397 125 15 60 chr11 44617045 44623478 -104159994 - L1PA7 LINE L1 -15 6139 9 1411 105 14 0 chr11 44623482 44623701 -104159771 - L1P5 LINE L1 -664 5487 5266 * 4410 217 8 11 chr11 44623696 44624792 -104158680 + L1P5 LINE L1 4163 5255 -891 3771 238 55 47 chr11 44624784 44624880 -104158592 - L1MDa LINE L1 -2906 3634 3540 * 1625 198 14 3 chr11 44624880 44625234 -104158238 - L1MB3 LINE L1 -3 6180 5823 3771 238 55 47 chr11 44625234 44626935 -104156537 - L1MDa LINE L1 -3000 3540 1815 1121 59 29 6 chr11 44626935 44627105 -104156367 + (TTTC)n Simple_repeat Simple_repeat 2 175 0 3771 238 55 47 chr11 44627105 44627664 -104155808 - L1MDa LINE L1 -4725 1815 1262 773 227 26 18 chr11 44627706 44627935 -104155537 + LTR55 LTR ERV 1 231 -317 1245 291 135 28 chr11 44627935 44628616 -104154856 - L1MDa LINE L1 -5568 972 123 268 256 51 13 chr11 44629288 44629366 -104154106 + L2 LINE L2 3233 3313 0 22 0 0 0 chr11 44629367 44629389 -104154083 + AT_rich Low_complexity Low_complexity 1 22 0 223 281 50 58 chr11 44630935 44631056 -104152416 + L2 LINE L2 3186 3305 -8 931 129 0 0 chr11 44631545 44631669 -104151803 - AluSq/x SINE Alu -188 125 2 192 40 0 0 chr11 44631670 44631695 -104151777 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 299 333 133 0 chr11 44631695 44631800 -104151672 - L2 LINE L2 -5 3267 3149 1970 116 10 10 chr11 44632353 44632656 -104150816 - AluSx SINE Alu -9 303 1 488 219 148 31 chr11 44634247 44634503 -104148969 - L1ME4a LINE L1 -20 6101 5816 25 75 0 0 chr11 44634598 44634651 -104148821 + AT_rich Low_complexity Low_complexity 1 53 0 21 0 0 0 chr11 44634800 44634821 -104148651 + AT_rich Low_complexity Low_complexity 1 21 0 2269 70 0 11 chr11 44636152 44636518 -104146954 - AluY SINE Alu 0 363 1 800 270 87 19 chr11 44636756 44637067 -104146405 - L1ME3A LINE L1 -1 6169 5838 890 133 76 44 chr11 44637379 44637537 -104145935 - AluSg/x SINE Alu -13 299 137 742 178 101 53 chr11 44638116 44638285 -104145187 + MER45A DNA AcHobo 1 177 -1 307 256 22 0 chr11 44639705 44639795 -104143677 + (TATAA)n Simple_repeat Simple_repeat 3 94 0 5207 241 40 41 chr11 44640046 44642069 -104141403 + L1M1 LINE L1 13 2734 -4831 2598 188 40 41 chr11 44643291 44644116 -104139356 - MER54A LTR ERVL 0 644 1 311 347 81 22 chr11 44644294 44644516 -104138956 + MIR SINE MIR 2 236 -26 195 42 0 0 chr11 44644531 44644555 -104138917 + (TTA)n Simple_repeat Simple_repeat 2 25 0 384 270 16 17 chr11 44645693 44645830 -104137642 - L1MD3 LINE L1 0 7808 7680 827 243 49 5 chr11 44645833 44646018 -104137454 + MER89 LTR ERV1 160 352 -207 986 192 5 15 chr11 44646075 44646278 -104137194 + MER89 LTR ERV1 359 559 0 189 107 0 0 chr11 44646351 44646379 -104137093 + (TATATG)n Simple_repeat Simple_repeat 3 30 0 632 322 105 53 chr11 44646516 44646986 -104136486 + L2 LINE L2 2119 2563 -751 1495 229 27 56 chr11 44646986 44647467 -104136005 - MLT1C LTR MaLR 0 467 1 1547 232 0 3 chr11 44647474 44647771 -104135701 + AluJb SINE Alu 1 296 -16 632 322 105 53 chr11 44647771 44647957 -104135515 + L2 LINE L2 2568 2818 -496 1035 100 0 0 chr11 44648017 44648167 -104135305 + (TA)n Simple_repeat Simple_repeat 1 150 0 207 160 40 0 chr11 44648186 44648236 -104135236 + (TA)n Simple_repeat Simple_repeat 1 52 0 336 48 0 0 chr11 44648327 44648369 -104135103 + (TG)n Simple_repeat Simple_repeat 2 43 0 391 278 21 56 chr11 44648471 44648615 -104134857 + L2 LINE L2 3134 3272 0 465 284 55 0 chr11 44648715 44648842 -104134630 - MER5C DNA MER1_type -190 134 1 24 32 0 0 chr11 44648921 44648952 -104134520 + AT_rich Low_complexity Low_complexity 1 31 0 30 27 0 0 chr11 44649519 44649556 -104133916 + AT_rich Low_complexity Low_complexity 1 37 0 368 141 61 0 chr11 44649562 44649725 -104133747 + (TA)n Simple_repeat Simple_repeat 1 173 0 206 145 81 0 chr11 44649740 44649864 -104133608 + (TA)n Simple_repeat Simple_repeat 2 135 0 21 0 0 0 chr11 44649865 44649886 -104133586 + AT_rich Low_complexity Low_complexity 1 21 0 294 180 55 16 chr11 44649902 44650030 -104133442 + (TATAA)n Simple_repeat Simple_repeat 4 136 0 346 122 74 0 chr11 44650030 44650178 -104133294 + (TA)n Simple_repeat Simple_repeat 1 159 0 1348 337 75 20 chr11 44650652 44651261 -104132211 + MER115 DNA AcHobo 42 684 -9 1265 300 57 19 chr11 44651269 44651353 -104132119 - LTR33 LTR ERVL -27 494 415 2207 78 0 11 chr11 44651353 44651697 -104131775 + AluY SINE Alu 1 341 0 1265 300 57 19 chr11 44651697 44652084 -104131388 - LTR33 LTR ERVL -106 415 3 307 351 96 14 chr11 44652089 44652297 -104131175 + MIR SINE MIR 34 258 -4 303 246 9 79 chr11 44652369 44652483 -104130989 - L2 LINE L2 0 3313 3208 180 373 0 0 chr11 44652598 44652649 -104130823 + MIR SINE MIR 29 79 -183 26 0 0 0 chr11 44652649 44652675 -104130797 + AT_rich Low_complexity Low_complexity 1 26 0 763 296 106 57 chr11 44652695 44653241 -104130231 - MLT1G1 LTR MaLR -32 558 8 202 222 22 0 chr11 44653242 44653287 -104130185 + MIR SINE MIR 101 146 -116 400 283 7 65 chr11 44653936 44654074 -104129398 - MLT1J2 LTR MaLR -284 166 37 1712 134 0 8 chr11 44654711 44654958 -104128514 + AluSx SINE Alu 1 245 -67 940 158 0 33 chr11 44655060 44655243 -104128229 + AluSg/x SINE Alu 134 310 0 290 278 0 52 chr11 44655276 44655373 -104128099 + MIR SINE MIR 17 108 -154 938 98 0 0 chr11 44655373 44655505 -104127967 - AluY SINE Alu -3 308 177 2159 116 26 0 chr11 44656453 44656755 -104126717 + AluSx SINE Alu 1 310 -2 2190 127 0 10 chr11 44657263 44657577 -104125895 + AluSx SINE Alu 1 311 -1 774 161 18 24 chr11 44657577 44657745 -104125727 - L1MB8 LINE L1 -11 6167 6001 1576 108 9 0 chr11 44658257 44658471 -104125001 + AluSq SINE Alu 84 299 -14 1500 167 10 66 chr11 44659672 44659860 -104123612 - AluJo SINE Alu -18 294 128 2009 139 3 0 chr11 44659860 44660148 -104123324 + AluSx SINE Alu 1 289 -23 1500 167 10 66 chr11 44660148 44660264 -104123208 - AluJo SINE Alu -184 128 7 5852 28 0 0 chr11 44660483 44661168 -104122304 + L1PA4 LINE L1 5471 6155 0 966 319 133 36 chr11 44661461 44662046 -104121426 - MER115 DNA AcHobo 0 693 41 2245 80 0 27 chr11 44662046 44662347 -104121125 + AluY SINE Alu 3 295 -16 966 319 133 36 chr11 44662347 44662391 -104121081 - MER115 DNA AcHobo -652 41 3 260 322 43 26 chr11 44662647 44662762 -104120710 - MIR SINE MIR -126 136 20 249 314 29 51 chr11 44663599 44663736 -104119736 - MIR SINE MIR -109 153 20 1053 286 99 24 chr11 44664522 44665213 -104118259 - MER97c DNA MER1_type? -4 1086 344 886 266 150 33 chr11 44665213 44665665 -104117807 - MLT1D LTR MaLR 0 505 1 * 1150 261 11 39 chr11 44665665 44666027 -104117445 - MER97c DNA MER1_type? -738 352 1 32 0 0 0 chr11 44667240 44667272 -104116200 + AT_rich Low_complexity Low_complexity 1 32 0 4223 8 0 0 chr11 44667272 44667747 -104115725 - L1PA2 LINE L1 0 6155 5681 3592 11 0 0 chr11 44667747 44668370 -104115102 + L1PA2 LINE L1 5042 5664 -491 2001 124 30 0 chr11 44668392 44668691 -104114781 + AluSp SINE Alu 1 308 -5 322 279 0 146 chr11 44669022 44669180 -104114292 + L2 LINE L2 3137 3271 -1 433 169 12 0 chr11 44669338 44669421 -104114051 + AluJ/FLAM SINE Alu 1 84 -228 21 57 0 0 chr11 44669726 44669761 -104113711 + AT_rich Low_complexity Low_complexity 1 35 0 1699 184 18 0 chr11 44670557 44670835 -104112637 - AluSx SINE Alu -27 285 3 665 308 68 38 chr11 44670997 44671393 -104112079 - MLT1I LTR MaLR -1 408 1 1808 195 60 152 chr11 44671871 44672404 -104111068 - LTR8A LTR ERV1 0 727 291 2500 131 0 8 chr11 44672404 44672771 -104110701 - THE1B LTR MaLR 0 364 1 1808 195 60 152 chr11 44672771 44673038 -104110434 - LTR8A LTR ERV1 -436 291 1 1666 230 50 38 chr11 44673603 44674046 -104109426 + MER77 LTR ERV1 54 501 -104 373 154 161 31 chr11 44674513 44674643 -104108829 - MER3 DNA MER1_type 0 2615 2469 332 250 0 0 chr11 44674641 44674713 -104108759 - MER3 DNA MER1_type -92 117 46 * 206 391 46 0 chr11 44674837 44674924 -104108548 + MIR SINE MIR 54 144 -118 2040 127 3 3 chr11 44674930 44675256 -104108216 + AluSq SINE Alu 1 326 0 500 310 131 64 chr11 44675288 44675775 -104107697 - LTR33 LTR ERVL -1 520 1 345 281 0 31 chr11 44675775 44675871 -104107601 + MIR SINE MIR 170 262 0 397 381 13 0 chr11 44676446 44676601 -104106871 + LTR33 LTR ERVL 44 200 -321 1399 200 22 55 chr11 44677488 44677888 -104105584 - MER67C LTR ERV1 0 514 154 1565 89 25 0 chr11 44677892 44678095 -104105377 - AluSc SINE Alu -20 289 82 491 115 0 0 chr11 44678181 44678259 -104105213 - MER67D LTR ERV1 -359 155 78 334 193 20 34 chr11 44678302 44678393 -104105079 - MER67D LTR ERV1 -298 338 2 211 200 0 0 chr11 44678574 44678614 -104104858 + (TG)n Simple_repeat Simple_repeat 1 40 0 1347 218 49 68 chr11 44679735 44680208 -104103264 + MLT1C LTR MaLR 4 467 0 371 269 32 75 chr11 44680342 44680528 -104102944 + MIR SINE MIR 35 212 -50 203 296 0 74 chr11 44681021 44681102 -104102370 - L2 LINE L2 -89 3224 3150 222 307 11 23 chr11 44681172 44681260 -104102212 + CT-rich Low_complexity Low_complexity 2 88 0 2132 107 3 17 chr11 44681333 44681633 -104101839 - AluSc SINE Alu -4 305 10 231 304 0 0 chr11 44681638 44681694 -104101778 + (TG)n Simple_repeat Simple_repeat 1 56 0 21 71 0 0 chr11 44681902 44681944 -104101528 + AT_rich Low_complexity Low_complexity 1 42 0 813 172 18 0 chr11 44682822 44683169 -104100303 + (CATA)n Simple_repeat Simple_repeat 1 353 0 304 71 0 0 chr11 44683216 44683258 -104100214 - MADE1 DNA Mariner -3 77 36 * 1035 233 8 16 chr11 44683257 44683510 -104099962 + MER4D LTR ERV1 653 903 0 1620 169 12 68 chr11 44683755 44684080 -104099392 + AluJo SINE Alu 3 309 -3 2141 127 7 0 chr11 44684296 44684595 -104098877 + AluSg1 SINE Alu 1 301 -8 258 170 0 0 chr11 44684824 44684871 -104098601 + MLT1G1 LTR MaLR 8 54 -541 2022 224 30 0 chr11 44684933 44685361 -104098111 - LTR53 LTR ERVL -38 481 41 1928 213 96 87 chr11 44685398 44686178 -104097294 - MER21B LTR ERV1 -60 803 17 257 257 95 34 chr11 44686275 44686423 -104097049 + MLT1G1 LTR MaLR 149 305 -290 3632 154 80 39 chr11 44686950 44686991 -104096481 - MER4D LTR ERV1 -5 898 860 2058 121 24 0 chr11 44686991 44687281 -104096191 + AluSc SINE Alu 1 297 -12 3632 154 80 39 chr11 44687281 44688010 -104095462 - MER4D LTR ERV1 -43 860 96 1835 214 109 55 chr11 44688010 44688185 -104095287 - MER50 LTR ERV1 0 734 570 2510 81 3 0 chr11 44688185 44688493 -104094979 + AluSp SINE Alu 1 309 -4 1835 214 109 55 chr11 44688493 44689005 -104094467 - MER50 LTR ERV1 -164 570 10 402 75 11 129 chr11 44689011 44689031 -104094441 - MER4B LTR ERV1 -510 100 79 3076 121 35 66 chr11 44689031 44689650 -104093822 + MER4A LTR ERV1 1 600 0 402 75 11 129 chr11 44689650 44689722 -104093750 - MER4B LTR ERV1 -531 79 19 244 62 21 21 chr11 44689737 44689785 -104093687 + (TAAAA)n Simple_repeat Simple_repeat 3 50 0 521 86 0 181 chr11 44690052 44690097 -104093375 - MER72 LTR ERV1 0 722 709 2244 114 0 0 chr11 44690097 44690396 -104093076 - AluSg SINE Alu -1 309 11 521 86 0 181 chr11 44690396 44690466 -104093006 - MER72 LTR ERV1 -13 709 628 1715 195 41 52 chr11 44690476 44691028 -104092444 + MLT2A2 LTR ERVL 1 554 0 1206 185 45 6 chr11 44691028 44691428 -104092044 - MER72 LTR ERV1 -267 455 9 956 153 12 12 chr11 44693381 44693551 -104089921 + THE1A LTR MaLR 1 170 -194 6970 58 8 7 chr11 44693569 44694925 -104088547 - L1PA6 LINE L1 -2 7590 6229 223 170 0 0 chr11 44694925 44694972 -104088500 + (TA)n Simple_repeat Simple_repeat 1 47 0 26136 90 17 5 chr11 44694972 44698905 -104084567 - L1PA6 LINE L1 -1349 6235 1445 6681 114 161 74 chr11 44698908 44700431 -104083041 - pTR5 LTR ERV1 0 2438 784 3744 201 26 3 chr11 44700431 44701248 -104082224 - L1P3 LINE L1 -5315 1146 326 1014 157 26 11 chr11 44701258 44701449 -104082023 + THE1A LTR MaLR 158 351 -4 2272 172 19 47 chr11 44701591 44701769 -104081703 - L1MA5 LINE L1 -2 6298 6116 2155 110 14 0 chr11 44701769 44702060 -104081412 + AluSq SINE Alu 1 295 -18 2272 172 19 47 chr11 44702060 44702410 -104081062 - L1MA5 LINE L1 -184 6116 5785 1530 113 30 79 chr11 44702410 44702773 -104080699 - MER4A LTR ERV1 0 664 261 519 154 0 11 chr11 44702774 44702865 -104080607 - MER4A LTR ERV1 -572 92 3 2975 174 34 9 chr11 44702867 44703929 -104079543 - L1MA5 LINE L1 -515 5788 4711 746 265 24 0 chr11 44705421 44705587 -104077885 + MER5A DNA MER1_type 14 183 -6 311 333 130 0 chr11 44705611 44705749 -104077723 + MIR SINE MIR 40 195 -67 270 369 95 12 chr11 44706765 44706933 -104076539 + MIR3 SINE MIR 18 199 -9 200 289 0 56 chr11 44707421 44707511 -104075961 + (TAGA)n Simple_repeat Simple_repeat 1 85 0 * 203 274 20 20 chr11 44707489 44707635 -104075837 + (TA)n Simple_repeat Simple_repeat 2 147 0 310 270 21 8 chr11 44707660 44707847 -104075625 - L1ME LINE L1 -289 5881 5692 619 126 92 0 chr11 44707956 44708075 -104075397 + AluSg/x SINE Alu 176 305 -7 309 205 24 126 chr11 44708085 44708212 -104075260 - L1ME LINE L1 -2323 5485 5372 923 236 72 58 chr11 44708216 44708236 -104075236 + MLT1A1 LTR MaLR 1 19 -346 2769 143 9 2 chr11 44708236 44708661 -104074811 - MSTA LTR MaLR 0 428 1 923 236 72 58 chr11 44708661 44709000 -104074472 + MLT1A1 LTR MaLR 19 365 0 28 0 0 0 chr11 44709062 44709090 -104074382 + AT_rich Low_complexity Low_complexity 1 28 0 1824 143 138 29 chr11 44709174 44709558 -104073914 - MSTA LTR MaLR -2 426 1 9087 151 9 42 chr11 44709558 44711189 -104072283 - MSTA-int LTR MaLR 0 1580 3 1854 147 105 11 chr11 44711207 44711589 -104071883 - MSTA LTR MaLR -10 418 1 342 125 0 62 chr11 44711590 44711654 -104071818 + Tigger7 DNA MER2_type 2502 2561 -26 3640 242 50 53 chr11 44711679 44712929 -104070543 + L1MB2 LINE L1 2680 3924 -2222 24249 43 1 0 chr11 44712929 44716735 -104066737 + L1PA4 LINE L1 2339 6154 -1 3640 242 50 53 chr11 44716735 44717227 -104066245 + L1MB2 LINE L1 3924 4416 -1730 735 253 14 43 chr11 44717229 44717506 -104065966 + L1MB7 LINE L1 5916 6184 0 * 3468 212 49 27 chr11 44717503 44719237 -104064235 + L1MB2 LINE L1 4398 6159 -12 23 0 0 0 chr11 44719252 44719275 -104064197 + AT_rich Low_complexity Low_complexity 1 23 0 259 263 76 10 chr11 44719280 44719478 -104063994 - MER114 LTR ERV -228 420 210 2164 121 13 0 chr11 44719524 44719831 -104063641 - AluSp SINE Alu -2 311 1 2045 123 11 0 chr11 44720149 44720434 -104063038 + AluSp SINE Alu 4 291 -22 29 47 0 0 chr11 44720635 44720678 -104062794 + AT_rich Low_complexity Low_complexity 1 43 0 2497 79 38 0 chr11 44720678 44721018 -104062454 - L1PB1 LINE L1 -1 6150 5798 11400 227 14 30 chr11 44721018 44724613 -104058859 - L1 LINE L1 -891 5255 1719 2114 119 10 29 chr11 44724613 44724924 -104058548 + AluSp SINE Alu 1 305 -8 11400 227 14 30 chr11 44724924 44725096 -104058376 - L1 LINE L1 -4427 1719 1546 1902 86 26 91 chr11 44725094 44725330 -104058142 - L1PBa LINE L1 -4782 2081 1884 * 2203 117 0 22 chr11 44725330 44725646 -104057826 - AluSc SINE Alu 0 309 1 1902 86 26 91 chr11 44725646 44725837 -104057635 - L1PBa LINE L1 -4979 1884 1682 457 82 38 55 chr11 44726020 44726203 -104057269 + (GGGTG)n Simple_repeat Simple_repeat 1 180 0 * 580 118 31 31 chr11 44726169 44726495 -104056977 + G-rich Low_complexity Low_complexity 1 326 0 3675 137 218 12 chr11 44726503 44727270 -104056202 - L1PBa LINE L1 -5303 1560 636 975 188 5 0 chr11 44727272 44727464 -104056008 - L1PBa LINE L1 -6663 200 8 24 0 0 0 chr11 44728402 44728426 -104055046 + AT_rich Low_complexity Low_complexity 1 24 0 1217 216 67 12 chr11 44728527 44728550 -104054922 - MLT1D LTR MaLR -1 625 605 7433 34 0 0 chr11 44728550 44729911 -104053561 - L1PA4 LINE L1 -2 6153 4787 1217 216 67 12 chr11 44729911 44730213 -104053259 - MLT1D LTR MaLR -21 605 172 258 372 53 0 chr11 44730528 44730641 -104052831 - L2 LINE L2 0 3272 3154 281 221 53 0 chr11 44730655 44730768 -104052704 + (TA)n Simple_repeat Simple_repeat 1 119 0 239 229 83 64 chr11 44730798 44730907 -104052565 + MLT1D LTR MaLR 1 111 -394 314 281 0 0 chr11 44731282 44731364 -104052108 - MER103 DNA DNA -38 128 47 2052 137 0 7 chr11 44731531 44731823 -104051649 + AluSx SINE Alu 1 290 -22 36 0 0 0 chr11 44731823 44731859 -104051613 + AT_rich Low_complexity Low_complexity 1 36 0 648 310 128 17 chr11 44731986 44732439 -104051033 + MLT1G1 LTR MaLR 38 595 0 343 172 40 81 chr11 44733102 44733201 -104050271 + MLT1K LTR MaLR 492 586 -2 1553 351 53 20 chr11 44734189 44734950 -104048522 - L2 LINE L2 -419 2895 2110 294 309 98 8 chr11 44734968 44735091 -104048381 - L2 LINE L2 -1461 1853 1720 2092 285 78 35 chr11 44735172 44736501 -104046971 + L1MEc LINE L1 169 1554 -4842 2128 149 67 63 chr11 44736509 44736939 -104046533 - MSTB1 LTR MaLR 0 432 1 2366 218 45 6 chr11 44736944 44737471 -104046001 - MSTB1-int LTR MaLR -5 1646 1099 792 258 97 30 chr11 44737479 44737941 -104045531 + L1MEc LINE L1 1991 2483 -3913 191 349 0 0 chr11 44738808 44738874 -104044598 - MIR SINE MIR -148 114 49 * 309 296 7 92 chr11 44738873 44739015 -104044457 - L2 LINE L2 0 3313 3184 942 177 14 36 chr11 44739113 44739182 -104044290 - L1 LINE L1 -1517 4629 4560 2042 182 35 33 chr11 44739182 44739611 -104043861 - MSTB1 LTR MaLR -2 430 1 942 177 14 36 chr11 44739611 44739761 -104043711 - L1 LINE L1 -1586 4560 4415 * 3594 204 37 35 chr11 44739756 44741227 -104042245 + L1MA9 LINE L1 4640 6116 -196 435 184 41 0 chr11 44741241 44741339 -104042133 - L1MA9 LINE L1 -49 6263 6162 228 54 27 0 chr11 44741330 44741367 -104042105 + L1MA9 LINE L1 6269 6306 -6 * 746 153 0 8 chr11 44741398 44741529 -104041943 + LTR28 LTR ERV1 1 130 -890 2104 133 0 3 chr11 44741529 44741822 -104041650 + AluSx SINE Alu 1 292 -20 415 233 109 13 chr11 44741921 44742155 -104041317 + MER61D LTR ERV1 275 1229 -24 3885 86 0 4 chr11 44742340 44742853 -104040619 - MER9 LTR ERVK 0 511 1 2046 137 0 27 chr11 44743379 44743679 -104039793 + AluSq SINE Alu 1 292 -21 262 308 19 10 chr11 44743865 44743969 -104039503 - MIR SINE MIR -11 251 147 1845 159 114 5 chr11 44744052 44744447 -104039025 - LTR47A LTR ERVL -14 438 1 321 338 91 7 chr11 44744647 44744801 -104038671 + MIR SINE MIR 49 215 -47 978 252 157 22 chr11 44744893 44745468 -104038004 + L1ME2 LINE L1 5497 6330 -4 782 246 45 94 chr11 44745469 44745985 -104037487 + L1ME3A LINE L1 4503 4980 -1166 2372 119 0 0 chr11 44745985 44746295 -104037177 + AluSq SINE Alu 3 312 -1 782 246 45 94 chr11 44746295 44746448 -104037024 + L1ME3A LINE L1 4980 5139 -1007 4498 50 24 15 chr11 44746500 44747532 -104035940 - MER11A LTR ERVK 0 1266 1 1559 269 112 13 chr11 44747551 44748322 -104035150 + L1ME3A LINE L1 5215 6056 -114 392 243 10 0 chr11 44748447 44748550 -104034922 + L1ME3A LINE L1 6067 6170 0 544 170 35 23 chr11 44749436 44749607 -104033865 + CT-rich Low_complexity Low_complexity 3 175 0 239 293 281 0 chr11 44750003 44750085 -104033387 + MER5A DNA MER1_type 67 171 -18 4180 128 34 52 chr11 44750086 44750512 -104032960 + MER4E LTR ERV1 3 435 -344 2204 70 0 0 chr11 44750512 44750798 -104032674 + L1PA5 LINE L1 5869 6154 0 216 0 0 0 chr11 44750803 44750827 -104032645 + (TAAAA)n Simple_repeat Simple_repeat 3 26 0 4180 128 34 52 chr11 44750827 44751185 -104032287 + MER4E LTR ERV1 439 779 0 2010 87 8 4 chr11 44751248 44751513 -104031959 - AluY SINE Alu -14 297 32 2393 124 63 14 chr11 44751673 44752099 -104031373 + MER4C LTR ERV1 1 447 -18 330 234 19 39 chr11 44752449 44752603 -104030869 + MER53 DNA DNA 23 173 -16 763 176 15 73 chr11 44752612 44752816 -104030656 - L1MC3 LINE L1 -8 7777 7586 207 0 0 0 chr11 44752833 44752856 -104030616 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 919 62 0 0 chr11 44752870 44752983 -104030489 - AluY SINE Alu -24 287 175 2153 126 0 0 chr11 44752985 44753279 -104030193 - AluSg SINE Alu -16 294 1 1414 203 3 7 chr11 44753287 44753592 -104029880 - L1MC3 LINE L1 -204 7581 7278 187 377 38 0 chr11 44754553 44754659 -104028813 - L2 LINE L2 -8 3305 3196 2321 102 0 0 chr11 44754791 44755096 -104028376 + AluSg SINE Alu 1 305 -5 188 403 42 51 chr11 44755136 44755352 -104028120 - L2 LINE L2 -342 2972 2759 404 365 101 50 chr11 44755744 44756180 -104027292 + L2 LINE L2 2853 3310 -3 21 0 0 0 chr11 44756542 44756563 -104026909 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr11 44756746 44756773 -104026699 + AT_rich Low_complexity Low_complexity 1 27 0 2850 204 62 30 chr11 44757063 44757810 -104025662 + MER21B LTR ERV1 39 809 -54 463 266 16 23 chr11 44758089 44758217 -104025255 - L2 LINE L2 -2 3311 3185 868 315 9 6 chr11 44758257 44758590 -104024882 + L1MEc LINE L1 34 367 -6029 5564 125 189 89 chr11 44759728 44761269 -104022203 - pTR5 LTR ERV1 0 2438 743 1646 186 99 49 chr11 44761326 44761705 -104021767 + LTR49-int LTR ERV1 844 1203 -3677 346 206 44 0 chr11 44761705 44761773 -104021699 + tRNA-Glu-GAG tRNA tRNA 2 72 -3 1646 186 99 49 chr11 44761773 44761924 -104021548 + LTR49-int LTR ERV1 1203 1613 -3267 2933 187 39 48 chr11 44762067 44762815 -104020657 + LTR49-int LTR ERV1 1372 2112 -4219 3702 147 59 80 chr11 44762818 44763620 -104019852 + LTR1 LTR ERV1 1 785 0 14683 178 44 11 chr11 44763620 44766553 -104016919 + HUERS-P2 LTR ERV1 1 3088 0 988 179 0 0 chr11 44766559 44766738 -104016734 - HUERS-P2 LTR ERV1 -1170 1918 1740 2477 178 41 114 chr11 44766750 44767397 -104016075 + HUERS-P2 LTR ERV1 3354 4047 -2284 1577 189 36 26 chr11 44767397 44767703 -104015769 - AluJb SINE Alu -3 309 1 2477 178 41 114 chr11 44767703 44767907 -104015565 + HUERS-P2 LTR ERV1 4047 4122 -2209 1630 166 3 53 chr11 44767907 44768209 -104015263 - AluJo SINE Alu -14 298 12 2477 178 41 114 chr11 44768209 44768364 -104015108 + HUERS-P2 LTR ERV1 4122 4287 -2044 790 212 98 52 chr11 44768471 44769058 -104014414 + LTR48 LTR ERV1 1 644 0 464 146 61 0 chr11 44769060 44769142 -104014330 + LTR48-int LTR ERV1 1 87 -6244 585 174 0 58 chr11 44769817 44769938 -104013534 - FLAM_C SINE Alu -18 125 12 299 91 18 18 chr11 44769946 44770001 -104013471 + LTR49-int LTR ERV1 4149 4203 -2128 21 0 0 0 chr11 44770969 44770990 -104012482 + AT_rich Low_complexity Low_complexity 1 21 0 2244 126 0 0 chr11 44771119 44771429 -104012043 + AluSx SINE Alu 1 310 -2 381 266 28 52 chr11 44771462 44771751 -104011721 + L1M4 LINE L1 4735 5016 -1130 788 265 49 16 chr11 44771760 44772130 -104011342 + L1MEc LINE L1 796 1177 -5219 689 246 101 30 chr11 44772209 44772477 -104010995 - L2 LINE L2 -2367 947 661 207 325 37 55 chr11 44772415 44772521 -104010951 - MIR SINE MIR -86 122 20 * 284 207 0 24 chr11 44773141 44773223 -104010249 - L1MD2 LINE L1 -1 6358 6279 1123 67 11 22 chr11 44773223 44773402 -104010070 + AluYb8 SINE Alu 1 177 -141 1449 111 19 37 chr11 44774372 44774696 -104008776 + AluYb8 SINE Alu 1 318 0 3054 208 19 12 chr11 44774696 44775416 -104008056 - L1MD2 LINE L1 -72 6287 5563 783 294 189 21 chr11 44775475 44775894 -104007578 - L2 LINE L2 0 3313 2825 234 373 68 17 chr11 44776266 44776384 -104007088 + MIR SINE MIR 26 149 -113 449 147 21 21 chr11 44777063 44777158 -104006314 - AluSg/x SINE Alu -4 305 211 1526 197 7 7 chr11 44777818 44778102 -104005370 + AluSx SINE Alu 13 296 -16 1758 124 79 14 chr11 44778208 44778499 -104004973 + AluSg SINE Alu 1 310 0 236 30 90 30 chr11 44778776 44778843 -104004629 + (TATAA)n Simple_repeat Simple_repeat 3 73 0 2331 104 0 13 chr11 44778901 44779217 -104004255 - AluSx SINE Alu 0 312 1 24 91 0 0 chr11 44779397 44779463 -104004009 + AT_rich Low_complexity Low_complexity 1 66 0 2241 101 3 13 chr11 44779585 44779901 -104003571 + AluSq SINE Alu 1 313 0 217 264 83 41 chr11 44781052 44781173 -104002299 - MIR SINE MIR -37 225 100 566 286 59 20 chr11 44781303 44781506 -104001966 + MIR SINE MIR 52 262 0 991 156 6 0 chr11 44781668 44781828 -104001644 - MLT2B1 LTR ERVL -359 161 1 1962 196 16 0 chr11 44781866 44782233 -104001239 + MLT1B LTR MaLR 18 390 0 388 248 17 0 chr11 44782252 44782369 -104001103 - Charlie8 DNA MER1_type -2254 163 45 27 0 0 0 chr11 44783221 44783248 -104000224 + AT_rich Low_complexity Low_complexity 1 27 0 2050 191 64 12 chr11 44783276 44783699 -103999773 - MER65A LTR ERV1 0 445 1 2147 258 75 17 chr11 44783699 44784798 -103998674 - MER65A-int LTR ERV1 0 4871 3605 1888 226 126 42 chr11 44784810 44784837 -103998635 - MER65-int LTR ERV1 -939 5392 5369 1922 126 7 0 chr11 44784837 44785170 -103998302 + AluSc SINE Alu 1 335 0 1888 226 126 42 chr11 44785170 44786095 -103997377 - MER65-int LTR ERV1 -962 5369 4282 558 183 107 139 chr11 44786082 44786420 -103997052 - MER65-int LTR ERV1 -1913 4418 2729 * 1588 198 7 0 chr11 44786422 44786725 -103996747 + L1PB3 LINE L1 5847 6151 -3 1102 161 33 59 chr11 44786813 44787118 -103996354 - MER65-int LTR ERV1 -2572 4026 3730 852 180 10 40 chr11 44787197 44787397 -103996075 - MER65-int LTR ERV1 -2868 3730 3537 5914 187 69 90 chr11 44787480 44790380 -103993092 - MER65-int LTR ERV1 -2377 2494 417 2136 181 37 18 chr11 44790742 44791179 -103992293 - MER65A LTR ERV1 0 445 1 409 250 57 40 chr11 44791179 44791348 -103992124 + MER112 DNA MER1_type 74 248 -12 207 313 50 0 chr11 44791465 44791545 -103991927 - L2 LINE L2 -2454 860 777 239 254 0 17 chr11 44791709 44791768 -103991704 - L2 LINE L2 0 3313 3256 3397 330 142 25 chr11 44791894 44792011 -103991461 - L2 LINE L2 -103 3210 3108 2754 94 0 0 chr11 44792011 44792374 -103991098 + THE1B LTR MaLR 1 363 -1 3397 330 142 25 chr11 44792374 44794753 -103988719 - L2 LINE L2 -205 3108 425 270 153 0 0 chr11 44794756 44794815 -103988657 + (CAT)n Simple_repeat Simple_repeat 1 59 0 241 421 50 34 chr11 44796185 44796482 -103986990 - L2 LINE L2 -7 3265 2964 188 280 80 70 chr11 44797555 44797655 -103985817 - L2 LINE L2 -3 3269 3169 2216 96 0 7 chr11 44797809 44798142 -103985330 + AluY SINE Alu 1 311 0 206 379 42 21 chr11 44798142 44798237 -103985235 - L2 LINE L2 -223 3049 2953 241 337 35 100 chr11 44798535 44799024 -103984448 - L2 LINE L2 -687 2627 2171 1496 240 30 30 chr11 44799181 44799571 -103983901 - MLT1C LTR MaLR 0 467 78 1341 204 112 161 chr11 44799571 44800497 -103982975 - LTR1B LTR ERV1 0 1020 1 269 213 107 0 chr11 44800497 44800564 -103982908 - MLT1C LTR MaLR -385 82 8 325 368 8 0 chr11 44801043 44801160 -103982312 + MIR SINE MIR 66 183 -79 671 224 0 0 chr11 44801195 44801320 -103982152 + FLAM_A SINE Alu 1 125 -8 305 246 180 30 chr11 44802661 44802828 -103980644 - MLT1K LTR MaLR -33 555 364 207 224 0 41 chr11 44803177 44803226 -103980246 + CT-rich Low_complexity Low_complexity 3 49 0 29 0 0 0 chr11 44803268 44803297 -103980175 + AT_rich Low_complexity Low_complexity 1 29 0 459 349 50 9 chr11 44803956 44804174 -103979298 - MIR SINE MIR -34 228 2 247 278 86 18 chr11 44805389 44805502 -103977970 + MIR SINE MIR 73 191 -61 505 351 24 5 chr11 44805511 44805716 -103977756 - MIR SINE MIR 0 262 54 324 103 0 69 chr11 44805771 44805829 -103977643 + MADE1 DNA Mariner 14 67 -13 2035 126 0 7 chr11 44806271 44806565 -103976907 - AluSc SINE Alu -15 294 3 22 35 0 0 chr11 44807644 44807673 -103975799 + AT_rich Low_complexity Low_complexity 1 29 0 290 242 42 11 chr11 44807857 44807952 -103975520 + MER5C DNA MER1_type 57 154 -170 328 224 224 0 chr11 44808026 44808160 -103975312 + MER5C DNA MER1_type 161 324 0 220 39 0 0 chr11 44808293 44808319 -103975153 + (TG)n Simple_repeat Simple_repeat 1 26 0 383 118 0 15 chr11 44808319 44808387 -103975085 + (TA)n Simple_repeat Simple_repeat 2 68 0 373 228 331 0 chr11 44808477 44808604 -103974868 + MER5A DNA MER1_type 13 181 -8 363 284 0 11 chr11 44809351 44809446 -103974026 + MIR SINE MIR 31 124 -138 282 95 0 0 chr11 44809590 44809632 -103973840 + (TG)n Simple_repeat Simple_repeat 1 42 0 210 91 0 0 chr11 44809731 44809764 -103973708 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 880 223 31 31 chr11 44810922 44811146 -103972326 - MER58A DNA MER1_type 0 224 1 235 167 0 0 chr11 44811148 44811184 -103972288 + MIR SINE MIR 216 251 -11 2481 63 0 0 chr11 44811481 44811782 -103971690 + AluY SINE Alu 1 301 -10 3806 186 33 1 chr11 44811922 44812701 -103970771 - L1 LINE L1 -983 5163 4360 2743 162 88 15 chr11 44812710 44813301 -103970171 + L1MA8 LINE L1 5656 6289 -2 305 344 65 30 chr11 44813325 44813555 -103969917 + L1M4c LINE L1 1471 1708 -4834 234 284 23 11 chr11 44813570 44813658 -103969814 + L1M4c LINE L1 1838 1926 -4614 24 32 0 0 chr11 44813880 44813911 -103969561 + AT_rich Low_complexity Low_complexity 1 31 0 345 179 126 11 chr11 44813991 44814086 -103969386 + L1M4c LINE L1 2444 2549 -3991 32 26 0 0 chr11 44814096 44814135 -103969337 + AT_rich Low_complexity Low_complexity 1 39 0 389 301 153 38 chr11 44814593 44814958 -103968514 + L1M4c LINE L1 3167 3573 -2967 2252 162 2 31 chr11 44815220 44815847 -103967625 + L1PA16 LINE L1 5007 5606 -560 1876 223 166 47 chr11 44815862 44816643 -103966829 + LTR28 LTR ERV1 8 972 -48 543 257 13 20 chr11 44816644 44816796 -103966676 + LTR28 LTR ERV1 869 1019 -1 3134 164 9 4 chr11 44816796 44817345 -103966127 + L1PA16 LINE L1 5610 6161 -5 361 373 28 0 chr11 44817417 44817594 -103965878 + L1M4c LINE L1 3921 4102 -2438 2172 115 13 0 chr11 44817633 44817938 -103965534 - AluSc SINE Alu 0 309 1 351 0 0 0 chr11 44818007 44818046 -103965426 + (TG)n Simple_repeat Simple_repeat 2 40 0 536 263 86 41 chr11 44818077 44818415 -103965057 + L1M4c LINE L1 4244 4596 -1944 300 258 33 132 chr11 44818580 44818762 -103964710 + L1ME2 LINE L1 28 191 -5879 407 311 67 37 chr11 44818909 44819302 -103964170 + L1ME2 LINE L1 408 808 -5275 2254 249 158 16 chr11 44819429 44820006 -103963466 + L1ME2 LINE L1 3596 4090 -1990 342 0 0 0 chr11 44820006 44820044 -103963428 + (CA)n Simple_repeat Simple_repeat 1 38 0 2254 249 158 16 chr11 44820044 44820274 -103963198 + L1ME2 LINE L1 4090 4286 -1794 2209 59 3 21 chr11 44820274 44820613 -103962859 + AluY SINE Alu 1 334 0 2254 249 158 16 chr11 44820613 44820881 -103962591 + L1ME2 LINE L1 4286 4826 -1254 189 171 0 0 chr11 44821379 44821414 -103962058 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 195 100 0 0 chr11 44821414 44821444 -103962028 + (CA)n Simple_repeat Simple_repeat 2 31 0 731 237 117 59 chr11 44821536 44821894 -103961578 + L1ME2 LINE L1 5711 6089 -9 282 194 0 0 chr11 44821964 44822026 -103961446 + (CATA)n Simple_repeat Simple_repeat 3 64 0 5144 140 24 43 chr11 44822027 44822628 -103960844 + MER49 LTR ERV1 1 579 -344 1699 180 52 17 chr11 44822628 44822990 -103960482 + THE1C LTR MaLR 1 375 0 5144 140 24 43 chr11 44822990 44823326 -103960146 + MER49 LTR ERV1 579 920 -3 1480 199 4 4 chr11 44823326 44823607 -103959865 - AluJb SINE Alu -6 306 26 252 0 0 0 chr11 44823803 44823831 -103959641 + (CA)n Simple_repeat Simple_repeat 1 28 0 231 194 65 48 chr11 44824768 44824830 -103958642 - L2 LINE L2 0 3272 3210 311 237 32 11 chr11 44825643 44825736 -103957736 + CT-rich Low_complexity Low_complexity 1 95 0 555 78 0 0 chr11 44826284 44826361 -103957111 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 555 78 0 0 chr11 44827064 44827141 -103956331 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 281 329 57 32 chr11 44828309 44828467 -103955005 + MIR SINE MIR 26 187 -75 26 30 0 0 chr11 44830352 44830385 -103953087 + AT_rich Low_complexity Low_complexity 1 33 0 2036 183 30 30 chr11 44830913 44831345 -103952127 + MSTB1 LTR MaLR 1 432 0 1502 181 78 43 chr11 44831976 44832347 -103951125 - MLT1B LTR MaLR 0 390 7 283 249 69 110 chr11 44834751 44834924 -103948548 + MIR SINE MIR 50 215 -47 625 282 111 14 chr11 44834949 44835165 -103948307 + MIR SINE MIR 12 248 -14 569 268 29 14 chr11 44835178 44835316 -103948156 - MIR SINE MIR -110 152 13 203 337 223 0 chr11 44835469 44835635 -103947837 - MIR SINE MIR -58 204 2 1949 161 62 39 chr11 44835857 44836292 -103947180 + MER65A LTR ERV1 1 445 0 465 291 8 106 chr11 44836572 44836826 -103946646 + MLT1K LTR MaLR 19 247 -341 277 310 21 42 chr11 44836964 44837106 -103946366 + MLT1K LTR MaLR 448 586 -2 185 132 26 0 chr11 44837819 44837857 -103945615 + (TG)n Simple_repeat Simple_repeat 2 40 0 236 167 0 19 chr11 44837861 44837915 -103945557 + (TA)n Simple_repeat Simple_repeat 1 53 0 321 82 0 0 chr11 44837964 44838013 -103945459 + (CAAAA)n Simple_repeat Simple_repeat 4 52 0 364 339 23 0 chr11 44838476 44838606 -103944866 + MIR SINE MIR 20 152 -110 621 326 11 41 chr11 44839375 44839642 -103943830 - MIR SINE MIR 0 262 4 21 36 0 0 chr11 44839880 44839908 -103943564 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 44839972 44839993 -103943479 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr11 44840483 44840504 -103942968 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 825 101 8 0 chr11 44840910 44841039 -103942433 - Alu SINE Alu -6 304 175 223 286 135 95 chr11 44841779 44842031 -103941441 + MIR SINE MIR 1 262 0 504 250 101 0 chr11 44842647 44842795 -103940677 + MIR SINE MIR 38 200 -62 24 0 0 0 chr11 44843038 44843062 -103940410 + AT_rich Low_complexity Low_complexity 1 24 0 2229 93 10 0 chr11 44843810 44844111 -103939361 - AluY SINE Alu 0 311 8 196 295 42 74 chr11 44844231 44844326 -103939146 + L2 LINE L2 3137 3228 -44 192 355 0 16 chr11 44844649 44844711 -103938761 + MIR SINE MIR 20 80 -182 227 263 123 35 chr11 44845228 44845342 -103938130 - MLT1H LTR MaLR -424 125 2 316 279 114 77 chr11 44845818 44846115 -103937357 - MLT1H LTR MaLR -222 327 20 23 68 0 0 chr11 44846139 44846183 -103937289 + AT_rich Low_complexity Low_complexity 1 44 0 212 216 20 0 chr11 44847653 44847704 -103935768 + (TAA)n Simple_repeat Simple_repeat 1 52 0 319 301 121 54 chr11 44847720 44847959 -103935513 - MIR SINE MIR 0 262 8 22 70 0 0 chr11 44848110 44848153 -103935319 + AT_rich Low_complexity Low_complexity 1 43 0 283 298 138 70 chr11 44848354 44848783 -103934689 + L2 LINE L2 2855 3312 -1 368 326 122 0 chr11 44849072 44849244 -103934228 + LTR16C LTR ERVL 299 491 0 427 329 6 12 chr11 44849272 44849439 -103934033 + GA-rich Low_complexity Low_complexity 2 167 0 220 231 15 30 chr11 44849463 44849597 -103933875 + GA-rich Low_complexity Low_complexity 1 132 0 224 345 95 0 chr11 44850401 44850485 -103932987 + MIR SINE MIR 30 121 -87 183 42 0 0 chr11 44850552 44850576 -103932896 + (GGAGAA)n Simple_repeat Simple_repeat 5 28 0 33 43 0 0 chr11 44850657 44850704 -103932768 + AT_rich Low_complexity Low_complexity 1 47 0 298 306 166 6 chr11 44851838 44851995 -103931477 + MIR SINE MIR 53 234 -28 22 35 0 0 chr11 44852133 44852162 -103931310 + AT_rich Low_complexity Low_complexity 1 29 0 196 313 163 0 chr11 44852273 44852353 -103931119 - L2 LINE L2 -37 3276 3184 22 0 0 0 chr11 44852671 44852693 -103930779 + AT_rich Low_complexity Low_complexity 1 22 0 1007 354 15 21 chr11 44854028 44854556 -103928916 - ERVL LTR ERVL -1383 4271 3747 1107 196 30 113 chr11 44854600 44854998 -103928474 + MLT1A1 LTR MaLR 1 365 0 3460 223 3 0 chr11 44854999 44855682 -103927790 + MLT1A1-int LTR MaLR 2 686 -1049 315 320 49 8 chr11 44855693 44855815 -103927657 - ERVL LTR ERVL -1963 3033 2907 1054 343 51 28 chr11 44855857 44856674 -103926798 - ERVL LTR ERVL -2640 2845 2050 2387 57 0 0 chr11 44856834 44857138 -103926334 - AluY SINE Alu 0 304 1 1041 337 31 36 chr11 44857192 44857744 -103925728 - ERVL LTR ERVL -3974 1022 474 6723 111 11 5 chr11 44857941 44858972 -103924500 + L1MA2 LINE L1 5262 6298 -6 316 344 80 6 chr11 44859533 44859696 -103923776 - LTR16A LTR ERVL -154 296 122 256 394 48 12 chr11 44860348 44860513 -103922959 + MIR SINE MIR 50 220 -42 193 237 68 102 chr11 44860672 44860790 -103922682 + L2 LINE L2 3185 3298 -15 6609 32 0 0 chr11 44861797 44862623 -103920849 + L1PA3 LINE L1 5357 6182 0 193 258 16 141 chr11 44862826 44862954 -103920518 + MIR3 SINE MIR 4 115 -93 231 286 0 11 chr11 44863303 44863394 -103920078 - L1MC4 LINE L1 -1339 6703 6614 215 258 15 15 chr11 44863394 44863460 -103920012 + (CATATA)n Simple_repeat Simple_repeat 2 67 0 276 30 0 0 chr11 44864167 44864200 -103919272 + (TC)n Simple_repeat Simple_repeat 2 34 0 * 319 83 33 0 chr11 44864199 44864259 -103919213 + (TA)n Simple_repeat Simple_repeat 1 62 0 465 295 27 58 chr11 44864395 44864653 -103918819 + MIR SINE MIR 3 252 -10 277 330 0 0 chr11 44864979 44865070 -103918402 + (CATA)n Simple_repeat Simple_repeat 2 92 0 21 0 0 0 chr11 44865238 44865259 -103918213 + AT_rich Low_complexity Low_complexity 1 21 0 1867 128 31 3 chr11 44865308 44865598 -103917874 - AluSx SINE Alu -14 298 1 201 152 0 0 chr11 44866188 44866221 -103917251 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2722 302 101 25 chr11 44867020 44868271 -103915201 + L2 LINE L2 650 2005 -1309 354 23 0 0 chr11 44868271 44868314 -103915158 + (TG)n Simple_repeat Simple_repeat 2 44 0 2722 302 101 25 chr11 44868314 44868367 -103915105 + L2 LINE L2 2005 2053 -1261 314 298 39 0 chr11 44868430 44868534 -103914938 + L2 LINE L2 2218 2325 -989 284 200 12 0 chr11 44868608 44868688 -103914784 + (TATATG)n Simple_repeat Simple_repeat 4 84 0 234 238 0 48 chr11 44868792 44868855 -103914617 - MLT1I LTR MaLR -58 351 292 323 194 14 0 chr11 44868901 44868973 -103914499 - MLT1D LTR MaLR 0 505 433 980 171 78 57 chr11 44868973 44869218 -103914254 + MER92B LTR ERV1 1 250 -386 712 191 6 87 chr11 44869217 44869400 -103914072 - MLT1E2 LTR MaLR -446 180 13 * 230 57 29 0 chr11 44869489 44869524 -103913948 + MLT1I LTR MaLR 98 133 -276 1421 252 33 14 chr11 44869768 44870129 -103913343 + MLT1F LTR MaLR 6 373 -169 270 177 0 81 chr11 44873300 44873362 -103910110 - L2 LINE L2 -5 3267 3211 303 278 107 83 chr11 44873464 44873716 -103909756 - MIR SINE MIR -4 258 1 642 334 73 16 chr11 44874213 44874581 -103908891 + MLT1I LTR MaLR 13 401 -8 236 157 39 0 chr11 44876054 44876105 -103907367 + CT-rich Low_complexity Low_complexity 3 55 0 189 344 115 21 chr11 44876510 44876606 -103906866 + MIR SINE MIR 35 139 -123 2030 199 122 0 chr11 44876714 44877140 -103906332 + MER66A LTR ERV1 1 478 0 6237 199 72 27 chr11 44877162 44879166 -103904306 + MER66A-int LTR ERV1 13 2167 -4509 * 13330 184 37 39 chr11 44879163 44880192 -103903280 + MER66A-int LTR ERV1 2338 3368 -3308 2131 108 4 0 chr11 44880192 44880471 -103903001 + AluSp SINE Alu 1 280 -33 291 28 0 0 chr11 44880471 44880507 -103902965 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 13330 184 37 39 chr11 44880507 44883284 -103900188 + MER66A-int LTR ERV1 3366 6238 -438 289 345 78 3 chr11 44883497 44883781 -103899691 - HAL1 LINE L1 -839 1668 1364 233 258 11 0 chr11 44883922 44884015 -103899457 + (TA)n Simple_repeat Simple_repeat 2 95 0 465 327 35 18 chr11 44884019 44884245 -103899227 - L1MEd LINE L1 -4971 1148 919 4851 195 28 18 chr11 44884254 44885509 -103897963 - L1MC1 LINE L1 -1 6612 5346 2807 267 56 13 chr11 44885511 44886787 -103896685 - L1MC1 LINE L1 -2433 3993 2664 24484 149 7 11 chr11 44886806 44893255 -103890217 - L1PA8 LINE L1 -17 6470 1 8449 181 103 57 chr11 44893272 44895802 -103887670 - L1MC1 LINE L1 -3915 2692 6 1366 197 17 0 chr11 44895793 44896092 -103887380 - L1MC3 LINE L1 -16 7769 7466 * 556 238 24 18 chr11 44896109 44896273 -103887199 - L1PB4 LINE L1 -22 6134 5970 905 161 0 0 chr11 44896373 44896528 -103886944 - L1PA15 LINE L1 -208 5957 5803 188 294 160 34 chr11 44897380 44897499 -103885973 - MIR SINE MIR -116 146 13 234 341 11 0 chr11 44897711 44897799 -103885673 - L2 LINE L2 0 3313 3225 537 269 35 56 chr11 44899208 44899405 -103884067 + MER20 DNA MER1_type 3 195 -24 2010 141 0 0 chr11 44899415 44899705 -103883767 + AluY SINE Alu 7 296 -15 2747 141 43 25 chr11 44899847 44899908 -103883564 + L1MA8 LINE L1 5722 5780 -511 342 67 0 0 chr11 44899908 44899953 -103883519 + (CA)n Simple_repeat Simple_repeat 2 46 0 2747 141 43 25 chr11 44899953 44900444 -103883028 + L1MA8 LINE L1 5780 6284 -7 180 111 0 0 chr11 44900444 44900471 -103883001 + (CATA)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr11 44900475 44900498 -103882974 + AT_rich Low_complexity Low_complexity 1 23 0 183 389 83 0 chr11 44900867 44900975 -103882497 - L2 LINE L2 0 3272 3156 1314 235 40 75 chr11 44901066 44901589 -103881883 + MLT1D LTR MaLR 1 505 0 574 337 114 45 chr11 44901675 44902272 -103881200 - L2 LINE L2 -217 3055 2422 2343 96 3 7 chr11 44903331 44903634 -103879838 - AluSp SINE Alu -11 302 1 385 240 94 0 chr11 44903782 44903878 -103879594 + MIR SINE MIR 71 175 -87 2009 120 24 10 chr11 44904120 44904412 -103879060 - AluSq SINE Alu -17 296 1 830 276 5 0 chr11 44904818 44905028 -103878444 - MER58A DNA MER1_type -13 211 1 180 284 8 119 chr11 44905276 44905410 -103878062 - MER5C DNA MER1_type -159 165 47 1395 227 25 44 chr11 44907174 44907579 -103875893 + MLT2C1 LTR ERVL 1 397 0 510 297 79 0 chr11 44908332 44908497 -103874975 - MER115 DNA AcHobo -314 379 202 222 205 0 0 chr11 44909000 44909039 -103874433 + GA-rich Low_complexity Low_complexity 3 41 0 584 185 53 13 chr11 44909800 44909951 -103873521 - L1MA10 LINE L1 -2 6332 6176 244 283 42 42 chr11 44910171 44910337 -103873135 - MER41B LTR ERV1 -210 425 260 3307 172 65 3 chr11 44910538 44911225 -103872247 - L1MB1 LINE L1 -6 6183 5454 670 273 35 46 chr11 44911279 44911539 -103871933 - MIR SINE MIR 0 262 6 316 252 118 34 chr11 44911578 44911697 -103871775 + MIR3 SINE MIR 10 138 -70 514 252 76 0 chr11 44912269 44912400 -103871072 + MER58B DNA MER1_type 192 332 -9 304 316 77 46 chr11 44912390 44912538 -103870934 + MLT1I LTR MaLR 27 169 -240 * 2256 86 10 7 chr11 44912538 44912842 -103870630 - AluY SINE Alu -4 307 3 304 316 77 46 chr11 44912842 44913019 -103870453 + MLT1I LTR MaLR 169 362 -47 255 61 0 0 chr11 44913197 44913230 -103870242 + (TA)n Simple_repeat Simple_repeat 2 34 0 432 55 0 0 chr11 44913230 44913285 -103870187 + (TG)n Simple_repeat Simple_repeat 2 56 0 298 297 106 47 chr11 44913363 44913599 -103869873 + MIR SINE MIR 7 256 -6 213 39 0 0 chr11 44914043 44914069 -103869403 + (TAGA)n Simple_repeat Simple_repeat 1 26 0 276 30 0 0 chr11 44914074 44914107 -103869365 + (CA)n Simple_repeat Simple_repeat 2 34 0 252 353 35 17 chr11 44914156 44914272 -103869200 - MIR3 SINE MIR -1 207 90 182 203 0 14 chr11 44914741 44914815 -103868657 + GA-rich Low_complexity Low_complexity 2 74 0 5199 140 22 17 chr11 44915457 44917075 -103866397 + L1PA13 LINE L1 4445 6156 -7 2322 59 21 3 chr11 44917389 44917679 -103865793 + AluY SINE Alu 1 295 -16 333 277 215 36 chr11 44917983 44918178 -103865294 + MIR SINE MIR 24 253 -9 188 296 111 64 chr11 44919573 44919745 -103863727 + MIR SINE MIR 32 211 -51 * 201 318 259 0 chr11 44919724 44919913 -103863559 - MIR SINE MIR -24 238 1 203 184 0 0 chr11 44920258 44920296 -103863176 + (TA)n Simple_repeat Simple_repeat 1 38 0 504 254 104 59 chr11 44921571 44921791 -103861681 - MIR SINE MIR -10 252 23 4353 130 62 12 chr11 44921943 44922691 -103860781 - LTR1 LTR ERV1 0 785 1 230 266 32 11 chr11 44924138 44924232 -103859240 + GA-rich Low_complexity Low_complexity 1 96 0 778 240 53 65 chr11 44924328 44924747 -103858725 + MLT1D LTR MaLR 31 467 0 230 286 130 26 chr11 44924837 44924991 -103858481 - L2 LINE L2 -125 3188 3019 233 338 96 7 chr11 44925043 44925179 -103858293 - MIR SINE MIR -74 188 41 1869 130 11 0 chr11 44926151 44926421 -103857051 + AluSg SINE Alu 1 273 -37 508 289 14 0 chr11 44926458 44926600 -103856872 - MIR SINE MIR 0 262 119 497 361 18 9 chr11 44926725 44926944 -103856528 + MIR SINE MIR 37 257 -5 1948 142 7 3 chr11 44927016 44927325 -103856147 - AluSq SINE Alu -3 310 1 236 281 55 31 chr11 44927468 44927596 -103855876 + MIR SINE MIR 132 262 0 278 299 49 62 chr11 44928643 44928787 -103854685 - MIR3 SINE MIR -65 143 2 243 256 86 61 chr11 44928790 44928919 -103854553 - MIR3 SINE MIR -37 171 39 407 328 125 48 chr11 44929072 44929407 -103854065 + L3 LINE CR1 1042 1402 -175 340 304 32 8 chr11 44929469 44929594 -103853878 + MIR3 SINE MIR 67 194 -14 201 389 35 18 chr11 44929613 44929726 -103853746 + L3 LINE CR1 1450 1564 -13 334 326 36 80 chr11 44930040 44930341 -103853131 - LTR67 LTR ERVL -169 388 101 7008 273 51 36 chr11 44930422 44933959 -103849513 + L1PA12 LINE L1 11 3590 -3994 1788 214 12 48 chr11 44933966 44934531 -103848941 + L1PA12 LINE L1 4434 4978 -2606 316 225 75 0 chr11 44934558 44934638 -103848834 - L1MC4 LINE L1 -1339 6703 6618 3864 193 1 22 chr11 44934638 44935282 -103848190 + L1PA12 LINE L1 4976 5603 -1981 1840 135 52 3 chr11 44935282 44935571 -103847901 + AluSx SINE Alu 1 303 -9 3864 193 1 22 chr11 44935571 44935704 -103847768 + L1PA12 LINE L1 5603 5737 -1847 1503 165 0 7 chr11 44935750 44936023 -103847449 + L1PA15 LINE L1 5887 6157 -8 242 287 31 114 chr11 44936048 44936211 -103847261 - L2 LINE L2 -1270 2044 1908 2312 73 0 7 chr11 44936211 44936512 -103846960 - AluY SINE Alu -2 309 11 242 287 31 114 chr11 44936512 44936602 -103846870 - L2 LINE L2 -1406 1908 1812 1375 213 15 0 chr11 44937013 44937281 -103846191 - AluJo SINE Alu -9 303 32 2438 131 28 33 chr11 44937291 44937749 -103845723 - L1MA8 LINE L1 -6 6285 5830 212 300 62 25 chr11 44938173 44938253 -103845219 + L2 LINE L2 3190 3272 0 322 296 121 25 chr11 44939232 44939431 -103844041 + MIR SINE MIR 13 230 -32 218 276 17 0 chr11 44939836 44939894 -103843578 + L2 LINE L2 2584 2642 -672 306 0 0 0 chr11 44940049 44940083 -103843389 + (TTA)n Simple_repeat Simple_repeat 3 36 0 1108 109 0 0 chr11 44940083 44940239 -103843233 - L1PA5 LINE L1 -18 6136 5981 7579 49 15 3 chr11 44940239 44941234 -103842238 + L1M LINE L1 4342 5350 -812 1440 295 37 22 chr11 44941363 44942041 -103841431 - L1ME3A LINE L1 -203 6247 5560 763 275 113 39 chr11 44942085 44942627 -103840845 - L1ME3A LINE L1 -913 5513 4932 1127 264 71 45 chr11 44942627 44943006 -103840466 - MLT1D LTR MaLR 0 505 109 2390 38 14 3 chr11 44943006 44943298 -103840174 + AluY SINE Alu 1 295 -16 1127 264 71 45 chr11 44943298 44943410 -103840062 - MLT1D LTR MaLR -396 109 1 496 137 60 6 chr11 44943546 44943714 -103839758 + (TA)n Simple_repeat Simple_repeat 1 177 0 922 295 52 24 chr11 44943785 44944465 -103839007 - L1MCa LINE L1 -4622 1985 1088 3151 248 87 43 chr11 44944473 44946370 -103837102 + L1ME1 LINE L1 3794 5769 -397 905 233 49 17 chr11 44946418 44946811 -103836661 - MER54B LTR ERVL -111 682 236 718 169 8 0 chr11 44946809 44946933 -103836539 - MER54B LTR ERVL -661 132 8 * 1240 242 21 15 chr11 44946943 44947282 -103836190 + L1ME1 LINE L1 5781 6121 -45 1709 258 98 19 chr11 44947313 44948409 -103835063 + L1ME2 LINE L1 4383 5553 -609 1094 263 80 29 chr11 44948414 44948862 -103834610 + L1ME2 LINE L1 5604 6074 -90 3255 18 0 3 chr11 44949503 44949883 -103833589 - L1PA3 LINE L1 -4 6151 5773 1642 169 0 7 chr11 44950772 44951056 -103832416 + AluSp SINE Alu 2 283 -30 328 297 0 0 chr11 44951081 44951172 -103832300 - L1MC4 LINE L1 -1339 6703 6613 222 213 0 0 chr11 44951818 44951865 -103831607 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 195 42 0 0 chr11 44953057 44953081 -103830391 + (TC)n Simple_repeat Simple_repeat 2 25 0 1682 260 65 28 chr11 44953267 44953836 -103829636 - MLT1E LTR MaLR -3 590 1 26 30 0 0 chr11 44953897 44953930 -103829542 + AT_rich Low_complexity Low_complexity 1 33 0 278 146 0 0 chr11 44954025 44954066 -103829406 - MER47A DNA MER2_type -1 365 325 1791 169 116 72 chr11 44954082 44954607 -103828865 + LTR10A LTR ERV1 1 548 -61 1606 144 0 0 chr11 44954615 44954858 -103828614 - MER47A DNA MER2_type -81 285 43 2097 120 3 16 chr11 44954958 44955266 -103828206 + AluSg SINE Alu 1 304 -6 22 0 0 0 chr11 44955311 44955333 -103828139 + AT_rich Low_complexity Low_complexity 1 22 0 233 226 62 85 chr11 44955536 44955713 -103827759 - L1MC4a LINE L1 -1578 6230 6058 558 231 94 68 chr11 44955761 44956068 -103827404 - L1MC4a LINE L1 -1847 5961 5647 666 309 67 14 chr11 44956222 44956445 -103827027 - LTR16A LTR ERVL -94 356 122 1090 363 41 34 chr11 44956643 44957598 -103825874 - ERVL LTR ERVL -381 5383 4422 509 307 49 53 chr11 44957876 44958120 -103825352 - MIR SINE MIR -18 244 2 185 355 60 81 chr11 44959209 44959541 -103823931 - L2 LINE L2 -42 3230 2906 1061 196 25 68 chr11 44959808 44960089 -103823383 + L1MA9 LINE L1 6008 6276 -36 239 239 84 48 chr11 44960229 44960396 -103823076 + L1ME4a LINE L1 5762 5934 -187 1880 161 0 7 chr11 44960852 44961156 -103822316 - AluSx SINE Alu -10 302 1 420 260 29 69 chr11 44961630 44961803 -103821669 - L2 LINE L2 -3 3310 3145 266 250 0 100 chr11 44961825 44961945 -103821527 + MER104 DNA Tc2 65 172 -8 270 211 118 0 chr11 44962326 44962402 -103821070 - MIR SINE MIR -54 208 124 1705 209 51 57 chr11 44963006 44963514 -103819958 + MLT1D LTR MaLR 1 505 0 647 304 42 14 chr11 44963522 44963739 -103819733 + MIR SINE MIR 36 258 -4 883 88 7 7 chr11 44963958 44964094 -103819378 + (GAAA)n Simple_repeat Simple_repeat 1 136 0 21 0 0 0 chr11 44965891 44965912 -103817560 + AT_rich Low_complexity Low_complexity 1 21 0 193 271 200 29 chr11 44965912 44966052 -103817420 + L2 LINE L2 3150 3313 0 188 375 52 0 chr11 44966797 44966893 -103816579 + MIR SINE MIR 32 132 -130 3176 189 20 3 chr11 44966965 44967559 -103815913 + MER6A DNA MER2_type 2 605 0 314 299 119 15 chr11 44968848 44968982 -103814490 + MIR SINE MIR 3 150 -112 336 372 101 12 chr11 44969435 44969693 -103813779 - L2 LINE L2 -222 3091 2811 1540 100 134 180 chr11 44969815 44970101 -103813371 - MSTA LTR MaLR 0 428 169 1910 147 3 0 chr11 44970101 44970387 -103813085 - AluSx SINE Alu -25 287 1 1540 100 134 180 chr11 44970387 44970549 -103812923 - MSTA LTR MaLR -259 169 1 248 375 31 0 chr11 44970833 44970929 -103812543 + L2 LINE L2 3169 3267 -5 282 306 33 56 chr11 44970959 44971139 -103812333 - MIR SINE MIR -28 234 59 214 222 0 32 chr11 44972339 44972402 -103811070 + T-rich Low_complexity Low_complexity 3 63 0 414 134 0 0 chr11 44973887 44973954 -103809518 + (TA)n Simple_repeat Simple_repeat 1 67 0 301 294 32 8 chr11 44974053 44974179 -103809293 + (CATA)n Simple_repeat Simple_repeat 3 131 0 445 211 24 106 chr11 44974321 44974444 -103809028 - MLT1I LTR MaLR -15 611 278 553 254 15 0 chr11 44975149 44975283 -103808189 + MLT1J2 LTR MaLR 47 182 -268 1027 231 14 9 chr11 44975741 44975962 -103807510 + MER58A DNA MER1_type 1 222 -2 279 292 95 42 chr11 44976288 44976456 -103807016 + MIR SINE MIR 86 262 0 23 0 0 0 chr11 44976629 44976652 -103806820 + AT_rich Low_complexity Low_complexity 1 23 0 33 0 0 0 chr11 44976842 44976875 -103806597 + AT_rich Low_complexity Low_complexity 1 33 0 3215 118 2 0 chr11 44976880 44977353 -103806119 - L1P LINE L1 -1131 5015 4542 26 0 0 0 chr11 44977359 44977385 -103806087 + AT_rich Low_complexity Low_complexity 1 26 0 245 180 0 16 chr11 44977437 44977498 -103805974 + (TA)n Simple_repeat Simple_repeat 1 60 0 22 0 0 0 chr11 44978093 44978115 -103805357 + AT_rich Low_complexity Low_complexity 1 22 0 358 331 16 0 chr11 44979789 44979910 -103803562 + MLT1K LTR MaLR 160 282 -306 226 298 0 32 chr11 44980347 44980441 -103803031 + (CATA)n Simple_repeat Simple_repeat 4 94 0 267 31 0 0 chr11 44980871 44980903 -103802569 + (CA)n Simple_repeat Simple_repeat 1 32 0 1870 159 27 57 chr11 44981405 44981846 -103801626 - L1MA7 LINE L1 -2 6289 5862 184 316 84 76 chr11 44982101 44982458 -103801014 + L2 LINE L2 2211 2570 -744 2221 93 17 0 chr11 44982634 44982925 -103800547 - AluSq SINE Alu -16 297 2 188 321 24 12 chr11 44986294 44986378 -103797094 - MER5A DNA MER1_type -78 111 27 260 284 32 53 chr11 44986444 44986539 -103796933 + L2 LINE L2 3180 3272 0 1811 189 100 85 chr11 44987786 44988294 -103795178 - LTR53 LTR ERVL -3 516 1 805 262 86 0 chr11 44989476 44989697 -103793775 - L1ME1 LINE L1 -11 6155 5916 268 293 131 10 chr11 44989749 44989848 -103793624 - MER94 DNA DNA -10 124 14 315 0 0 0 chr11 44989878 44989913 -103793559 + (CA)n Simple_repeat Simple_repeat 2 36 0 245 266 29 93 chr11 44990232 44990371 -103793101 + L3 LINE CR1 1433 1562 -15 259 243 157 43 chr11 44990445 44990585 -103792887 + MIR SINE MIR 107 262 0 1102 313 41 33 chr11 44990827 44991287 -103792185 - MER115 DNA AcHobo -9 684 221 477 297 35 30 chr11 44991541 44991743 -103791729 + MLT1J2 LTR MaLR 92 294 -156 312 70 0 0 chr11 44991874 44991917 -103791555 + (TG)n Simple_repeat Simple_repeat 2 44 0 483 69 0 0 chr11 44992020 44992092 -103791380 + (TAAA)n Simple_repeat Simple_repeat 4 75 0 225 154 0 0 chr11 44992100 44992139 -103791333 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 1487 212 55 23 chr11 44992623 44992916 -103790556 - MLT1A1 LTR MaLR -8 357 50 2198 128 3 0 chr11 44992916 44993221 -103790251 - AluSq SINE Alu -7 306 1 1487 212 55 23 chr11 44993221 44993272 -103790200 - MLT1A1 LTR MaLR -315 50 2 22 35 0 0 chr11 44993824 44993853 -103789619 + AT_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chr11 44993892 44993915 -103789557 + (A)n Simple_repeat Simple_repeat 1 23 0 22 35 0 0 chr11 44994836 44994865 -103788607 + AT_rich Low_complexity Low_complexity 1 29 0 216 0 0 0 chr11 44994904 44994928 -103788544 + (A)n Simple_repeat Simple_repeat 1 24 0 1190 311 38 17 chr11 44995888 44996306 -103787166 - LTR16A LTR ERVL -8 442 16 280 312 72 8 chr11 44997028 44997153 -103786319 - MIR SINE MIR -128 134 2 402 258 75 38 chr11 44997385 44997571 -103785901 - L2 LINE L2 -8 3305 3113 314 286 248 12 chr11 44997662 44997823 -103785649 + MIR SINE MIR 64 262 0 204 97 0 0 chr11 44998388 44998419 -103785053 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 225 0 0 0 chr11 44998746 44998771 -103784701 + (T)n Simple_repeat Simple_repeat 1 25 0 5031 157 53 2 chr11 44999034 44999926 -103783546 + L1MC1 LINE L1 232 1168 -5258 436 237 94 31 chr11 44999925 45000149 -103783323 - L1M4 LINE L1 -1662 4484 4247 * 3579 104 6 0 chr11 45000157 45000657 -103782815 - L1PA11 LINE L1 -1 6173 5671 1066 78 0 0 chr11 45000659 45000822 -103782650 + L1PA5 LINE L1 6003 6165 0 4273 182 32 22 chr11 45000823 45001573 -103781899 + L1MA7 LINE L1 1179 1920 -4651 411 56 0 0 chr11 45001573 45001627 -103781845 + (CA)n Simple_repeat Simple_repeat 1 54 0 4273 182 32 22 chr11 45001627 45002017 -103781455 + L1MA7 LINE L1 1920 6452 -119 2121 132 65 11 chr11 45002018 45002373 -103781099 - THE1C LTR MaLR -1 374 1 9888 128 22 16 chr11 45002373 45003944 -103779528 - THE1C-int LTR MaLR 0 1580 2 1311 159 5 0 chr11 45003945 45004146 -103779326 - THE1C LTR MaLR 0 375 174 1328 146 9 9 chr11 45004247 45004466 -103779006 - THE1C LTR MaLR -155 220 2 475 188 0 26 chr11 45004466 45004583 -103778889 + L1MA8 LINE L1 6167 6280 -11 999 148 132 11 chr11 45004629 45004995 -103778477 + L1MC1 LINE L1 1448 1947 -4479 5025 255 62 18 chr11 45004998 45006867 -103776605 + L1MC1 LINE L1 2726 4512 -2101 1569 97 0 23 chr11 45006867 45007084 -103776388 + AluY SINE Alu 1 212 -99 5025 255 62 18 chr11 45007084 45008844 -103774628 + L1MC1 LINE L1 4512 6613 0 1060 286 109 55 chr11 45009016 45009485 -103773987 - L2 LINE L2 0 3313 2820 324 355 60 14 chr11 45009619 45009836 -103773636 - MIR SINE MIR -30 232 6 216 0 0 0 chr11 45009959 45009983 -103773489 + (TG)n Simple_repeat Simple_repeat 2 25 0 325 279 57 95 chr11 45010030 45010292 -103773180 + MIR SINE MIR 3 254 -8 790 333 132 21 chr11 45011325 45011947 -103771525 - L2 LINE L2 -375 2939 2249 22 56 0 0 chr11 45013154 45013190 -103770282 + AT_rich Low_complexity Low_complexity 1 36 0 1532 205 23 3 chr11 45014154 45014456 -103769016 - AluJo SINE Alu -2 310 3 483 209 88 40 chr11 45014482 45014630 -103768842 - MER20 DNA MER1_type -1 218 64 337 39 39 0 chr11 45014632 45014683 -103768789 + (CAAAAA)n Simple_repeat Simple_repeat 3 55 0 1777 291 130 10 chr11 45066281 45067580 -103715892 - L1MEc LINE L1 -2376 3839 2385 1409 77 0 6 chr11 45067654 45067835 -103715637 + AluY SINE Alu 1 180 -131 24 32 0 0 chr11 45067880 45067911 -103715561 + AT_rich Low_complexity Low_complexity 1 31 0 6540 108 23 24 chr11 45067911 45068157 -103715315 - L1MA1 LINE L1 0 6302 6057 2637 19 7 0 chr11 45068157 45068466 -103715006 - AluYa5 SINE Alu 0 311 1 6540 108 23 24 chr11 45068466 45069266 -103714206 - L1MA1 LINE L1 -245 6057 5257 476 244 129 4 chr11 45069266 45069491 -103713981 - L1MEc LINE L1 -4119 2277 2025 704 275 94 48 chr11 45069551 45070341 -103713131 - L1MEc LINE L1 -4463 1933 1108 22 35 0 0 chr11 45070494 45070523 -103712949 + AT_rich Low_complexity Low_complexity 1 29 0 747 198 69 230 chr11 45071217 45071276 -103712196 - MLT1E LTR MaLR -6 587 520 2148 97 7 3 chr11 45071276 45071565 -103711907 + AluSp SINE Alu 3 292 -21 747 198 69 230 chr11 45071565 45071939 -103711533 - MLT1E LTR MaLR -73 520 271 1882 138 14 34 chr11 45072042 45072391 -103711081 + L1PB4 LINE L1 5450 5791 -365 246 174 0 0 chr11 45072391 45072437 -103711035 + (CATA)n Simple_repeat Simple_repeat 3 48 0 722 305 55 9 chr11 45072520 45072864 -103710608 + L1PB4 LINE L1 5782 6141 -15 395 268 0 0 chr11 45073038 45073135 -103710337 - L1MD2 LINE L1 -477 5882 5786 835 234 45 0 chr11 45073137 45073338 -103710134 + MLT2B1 LTR ERVL 1 210 -310 712 199 9 109 chr11 45073358 45073517 -103709955 + MLT2B1 LTR ERVL 331 466 -54 180 77 0 0 chr11 45073517 45073543 -103709929 + (TG)n Simple_repeat Simple_repeat 2 27 0 712 199 9 109 chr11 45073543 45073594 -103709878 + MLT2B1 LTR ERVL 466 520 0 1804 231 9 5 chr11 45073595 45074027 -103709445 - L1MD2 LINE L1 -572 5787 5354 406 296 71 50 chr11 45074028 45074308 -103709164 + L1M4 LINE L1 3176 3461 -2685 1438 228 24 12 chr11 45074316 45074650 -103708822 + L1M4 LINE L1 5423 5760 -418 1055 238 55 97 chr11 45074648 45075228 -103708244 - L1MD2 LINE L1 -777 5369 4813 * 2023 134 13 0 chr11 45075228 45075535 -103707937 - AluY SINE Alu 0 311 1 1055 238 55 97 chr11 45075535 45075554 -103707918 - L1MD2 LINE L1 -1333 4813 4795 * 1220 271 79 24 chr11 45075538 45076591 -103706881 + L1MEc LINE L1 1826 2904 -3311 2477 65 0 3 chr11 45076591 45076900 -103706572 + AluY SINE Alu 1 308 -3 1220 271 79 24 chr11 45076900 45076954 -103706518 + L1MEc LINE L1 2904 2954 -3261 877 313 24 12 chr11 45077041 45077455 -103706017 + L1MEc LINE L1 3592 4013 -2202 7746 17 0 3 chr11 45077455 45078671 -103704801 + L1PA3 LINE L1 4939 6151 -4 1557 153 8 0 chr11 45078789 45079066 -103704406 + L1PB4 LINE L1 5897 6176 0 341 216 14 0 chr11 45080449 45080523 -103702949 - MER116 DNA Mariner -5 75 1 306 0 0 0 chr11 45080811 45080845 -103702627 + (CA)n Simple_repeat Simple_repeat 2 35 0 1388 162 18 18 chr11 45080845 45081673 -103701799 - L1MC1 LINE L1 -13 6320 5429 1162 231 85 0 chr11 45081718 45082012 -103701460 + MER5C DNA MER1_type 1 319 -5 356 217 11 0 chr11 45082070 45082162 -103701310 + (TG)n Simple_repeat Simple_repeat 2 94 0 463 163 12 0 chr11 45082173 45082259 -103701213 - L1MA9 LINE L1 -53 6259 6173 528 343 93 45 chr11 45082291 45082734 -103700738 - L2 LINE L2 -723 2591 2128 243 268 0 0 chr11 45082733 45082789 -103700683 + L2 LINE L2 3252 3307 -6 * 1428 218 11 0 chr11 45082881 45083165 -103700307 - AluJo SINE Alu -14 298 12 489 294 61 40 chr11 45083279 45083507 -103699965 - L2 LINE L2 -1318 1996 1764 197 413 31 22 chr11 45083667 45083897 -103699575 - MIR SINE MIR -10 252 19 414 0 0 0 chr11 45083898 45083944 -103699528 + (TG)n Simple_repeat Simple_repeat 1 46 0 1501 118 74 118 chr11 45083961 45084366 -103699106 - LTR7 LTR ERV1 -63 387 1 4629 61 3 8 chr11 45084366 45084977 -103698495 - HERVH LTR ERV1 0 7713 7106 989 149 6 6 chr11 45084969 45085130 -103698342 - HERVH LTR ERV1 -4061 3652 3492 * 985 120 7 0 chr11 45085120 45085270 -103698202 - HERVH LTR ERV1 -4423 3290 3140 * 6254 135 0 18 chr11 45085249 45086288 -103697184 - HERVH LTR ERV1 -4718 2995 1976 2300 91 0 3 chr11 45086406 45086726 -103696746 - L1PA10 LINE L1 -5 6163 5845 3215 103 39 0 chr11 45086728 45087321 -103696151 + L1P4 LINE L1 5141 5754 -414 1790 185 0 0 chr11 45087403 45087701 -103695771 - AluJo SINE Alu -14 298 1 27 29 0 0 chr11 45087705 45087739 -103695733 + AT_rich Low_complexity Low_complexity 1 34 0 234 297 0 0 chr11 45087739 45087813 -103695659 + L1ME3 LINE L1 6089 6162 0 286 378 16 42 chr11 45087847 45088040 -103695432 - MLT1I LTR MaLR -108 301 114 1206 178 5 0 chr11 45088545 45088742 -103694730 - MER58A DNA MER1_type -15 209 12 287 325 47 35 chr11 45088767 45088936 -103694536 - MIR3 SINE MIR -11 197 27 265 295 24 72 chr11 45089288 45089495 -103693977 - L1MEc LINE L1 -5132 1129 933 291 281 48 30 chr11 45089540 45089707 -103693765 - L1MEc LINE L1 -5186 884 715 2114 179 14 43 chr11 45090448 45090889 -103692583 + MSTA LTR MaLR 1 428 0 387 321 179 24 chr11 45091191 45091531 -103691941 - LTR16A1 LTR ERVL -10 447 55 1746 170 168 11 chr11 45093074 45093444 -103690028 - MSTA LTR MaLR 0 428 1 8827 150 13 38 chr11 45093444 45094472 -103689000 - MSTA-int LTR MaLR 0 1580 605 2092 138 0 0 chr11 45094472 45094777 -103688695 - AluSx SINE Alu -7 305 1 8827 150 13 38 chr11 45094777 45095365 -103688107 - MSTA-int LTR MaLR -975 605 4 1643 159 136 60 chr11 45095369 45095766 -103687706 - MSTA LTR MaLR -1 427 1 5919 103 12 11 chr11 45096568 45097469 -103686003 - L1PA13 LINE L1 -4 6159 5258 733 265 81 27 chr11 45097677 45097975 -103685497 + L1ME3A LINE L1 5847 6160 -10 276 374 69 38 chr11 45098641 45098772 -103684700 - L2 LINE L2 -5 3267 3133 475 284 39 65 chr11 45100781 45100936 -103682536 - LTR33 LTR ERVL -336 185 35 2402 83 0 3 chr11 45100936 45101248 -103682224 + AluY SINE Alu 1 311 0 705 237 40 0 chr11 45101590 45101742 -103681730 - FRAM SINE Alu -8 158 1 483 277 53 10 chr11 45102586 45102791 -103680681 - MLT1J2 LTR MaLR -163 283 68 210 118 0 0 chr11 45103025 45103059 -103680413 + (CA)n Simple_repeat Simple_repeat 2 35 0 1447 194 110 42 chr11 45103119 45103527 -103679945 + MER63B DNA MER1_type 1 436 0 23 0 0 0 chr11 45103684 45103707 -103679765 + AT_rich Low_complexity Low_complexity 1 23 0 278 311 16 114 chr11 45104363 45104617 -103678855 + MLT1I LTR MaLR 59 287 -122 923 178 0 0 chr11 45105049 45105212 -103678260 + L1PB4 LINE L1 5994 6156 0 227 222 0 0 chr11 45105254 45105299 -103678173 - L1MC4 LINE L1 -1340 6702 6658 1551 101 0 5 chr11 45105300 45105508 -103677964 - AluSg/x SINE Alu -18 294 88 609 115 0 0 chr11 45105510 45105597 -103677875 + AluS SINE Alu 11 97 -216 7119 49 11 1 chr11 45106103 45107778 -103675694 + L1PA5 LINE L1 4465 6154 0 306 261 90 96 chr11 45108301 45108489 -103674983 - L1MEd LINE L1 -4885 1234 1048 1211 191 64 69 chr11 45108525 45108917 -103674555 + MLT1B LTR MaLR 1 390 0 21 0 0 0 chr11 45109516 45109537 -103673935 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 45110492 45110520 -103672952 + AT_rich Low_complexity Low_complexity 1 28 0 213 175 0 0 chr11 45110990 45111030 -103672442 + A-rich Low_complexity Low_complexity 1 40 0 1924 181 17 50 chr11 45111445 45111848 -103671624 + MLT1B LTR MaLR 1 390 0 24 0 0 0 chr11 45112128 45112152 -103671320 + AT_rich Low_complexity Low_complexity 1 24 0 497 306 41 12 chr11 45112311 45112481 -103670991 - MIR SINE MIR -82 180 6 1282 265 103 33 chr11 45112676 45113443 -103670029 + L1ME1 LINE L1 3951 4771 -1375 252 191 0 15 chr11 45113443 45113511 -103669961 + (TTAA)n Simple_repeat Simple_repeat 1 67 0 228 200 22 0 chr11 45113523 45113568 -103669904 - L1M4 LINE L1 -1381 4765 4720 8943 215 40 15 chr11 45113619 45114861 -103668611 + L1MA7 LINE L1 2238 3564 -2582 1578 179 29 4 chr11 45114861 45115159 -103668313 + AluSx SINE Alu 1 305 0 8943 215 40 15 chr11 45115159 45116187 -103667285 + L1MA7 LINE L1 3564 4565 -1581 1934 198 50 19 chr11 45116187 45116606 -103666866 + MSTB1 LTR MaLR 1 432 0 2677 219 10 3 chr11 45116610 45117195 -103666277 + MSTB1-int LTR MaLR 5 593 -1058 2797 181 66 13 chr11 45117197 45117513 -103665959 + L1MA7 LINE L1 5459 5757 -534 1636 181 3 32 chr11 45117513 45117822 -103665650 + AluJb SINE Alu 1 300 -12 2797 181 66 13 chr11 45117822 45118185 -103665287 + L1MA7 LINE L1 5757 6280 -11 2129 269 51 38 chr11 45118220 45119273 -103664199 + L1ME1 LINE L1 5040 6108 -58 230 209 27 27 chr11 45119276 45119386 -103664086 + (CATA)n Simple_repeat Simple_repeat 2 111 0 2661 288 129 44 chr11 45119428 45121273 -103662199 + L1M4 LINE L1 2217 4341 -1805 1976 133 0 20 chr11 45121273 45121566 -103661906 + AluSx SINE Alu 3 289 -23 2661 288 129 44 chr11 45121566 45122277 -103661195 + L1M4 LINE L1 4341 4990 -1156 313 301 0 19 chr11 45122746 45122849 -103660623 + GA-rich Low_complexity Low_complexity 4 104 0 26 50 0 0 chr11 45122974 45123014 -103660458 + AT_rich Low_complexity Low_complexity 1 40 0 1479 129 16 65 chr11 45123133 45123343 -103660129 - L1MA4 LINE L1 0 6300 6108 2318 57 0 17 chr11 45123343 45123643 -103659829 - AluY SINE Alu -16 295 1 1479 129 16 65 chr11 45123643 45123742 -103659730 - L1MA4 LINE L1 -192 6108 6006 225 349 0 0 chr11 45124086 45124149 -103659323 + L3 LINE CR1 1513 1575 -2 541 307 47 7 chr11 45125128 45125278 -103658194 + MIR3 SINE MIR 26 181 -27 259 306 9 18 chr11 45125937 45126048 -103657424 + LTR33 LTR ERVL 1 110 -411 255 409 0 0 chr11 45126204 45126314 -103657158 + LTR33 LTR ERVL 301 410 -111 1114 84 0 0 chr11 45126325 45126467 -103657005 - AluSp SINE Alu -19 294 153 618 322 47 44 chr11 45126607 45126924 -103656548 - MLT1K LTR MaLR -201 387 70 514 332 85 7 chr11 45127257 45127717 -103655755 + L2 LINE L2 2763 3270 -2 24 96 0 0 chr11 45127836 45127909 -103655563 + AT_rich Low_complexity Low_complexity 1 73 0 532 297 26 51 chr11 45128322 45128586 -103654886 + MIR SINE MIR 10 262 0 311 335 19 31 chr11 45128790 45128951 -103654521 + MIR SINE MIR 104 262 0 224 282 106 0 chr11 45129975 45130060 -103653412 - L2 LINE L2 -15 3298 3205 361 325 49 16 chr11 45130090 45130213 -103653259 + L2 LINE L2 3138 3264 -8 278 349 24 75 chr11 45130799 45131094 -103652378 - L2 LINE L2 0 3272 2993 505 368 81 10 chr11 45131108 45131705 -103651767 + L2 LINE L2 2615 3256 -16 1001 235 0 0 chr11 45131828 45132024 -103651448 - MLT1B LTR MaLR -8 382 187 303 253 53 0 chr11 45132027 45132102 -103651370 - MER2 DNA MER2_type 0 345 267 1034 138 122 5 chr11 45132184 45132373 -103651099 - MER2 DNA MER2_type -134 211 1 869 191 67 6 chr11 45132373 45132549 -103650923 - MLT1B LTR MaLR -201 189 3 540 296 50 86 chr11 45132716 45133192 -103650280 - MLT1J LTR MaLR -36 475 17 220 136 15 15 chr11 45133536 45133602 -103649870 + (TAAA)n Simple_repeat Simple_repeat 3 68 0 202 367 78 0 chr11 45133692 45133782 -103649690 + MIR SINE MIR 86 182 -80 476 351 0 26 chr11 45133882 45134073 -103649399 + MIR SINE MIR 66 251 -11 666 255 62 56 chr11 45135189 45135546 -103647926 - L1MC4 LINE L1 -541 7501 7143 310 207 17 0 chr11 45137506 45137564 -103645908 - L2 LINE L2 0 3272 3214 1012 252 64 19 chr11 45137848 45138209 -103645263 - L1ME2 LINE L1 -213 5951 5575 224 312 170 0 chr11 45138224 45138365 -103645107 + MIR SINE MIR 98 262 0 23 0 0 0 chr11 45138381 45138404 -103645068 + AT_rich Low_complexity Low_complexity 1 23 0 272 254 15 15 chr11 45138518 45138585 -103644887 - MIR3 SINE MIR -34 174 108 601 343 58 0 chr11 45138625 45138832 -103644640 - MIR SINE MIR -42 220 2 348 309 64 32 chr11 45139575 45139795 -103643677 - MLT1I LTR MaLR -188 221 1 409 326 76 0 chr11 45139915 45140087 -103643385 - MIR SINE MIR -12 250 66 382 350 64 0 chr11 45140401 45140558 -103642914 - MIR SINE MIR -89 173 7 402 315 27 20 chr11 45141019 45141168 -103642304 - L2 LINE L2 -2 3311 3162 2390 77 0 0 chr11 45141217 45141517 -103641955 + AluY SINE Alu 10 309 -2 222 214 57 0 chr11 45141524 45141594 -103641878 + (TAGA)n Simple_repeat Simple_repeat 3 76 0 302 330 35 26 chr11 45141630 45141745 -103641727 - L2 LINE L2 -240 3073 2958 594 284 214 12 chr11 45141800 45142202 -103641270 + L2 LINE L2 2209 2691 -623 360 192 13 0 chr11 45142272 45142350 -103641122 + L1MA7 LINE L1 5976 6054 -237 402 333 7 14 chr11 45142379 45142526 -103640946 + L2 LINE L2 2799 2944 -370 222 295 90 0 chr11 45142557 45142635 -103640837 + L2 LINE L2 3225 3309 -4 2055 103 0 0 chr11 45142637 45142908 -103640564 - AluSx SINE Alu -41 271 1 213 288 50 93 chr11 45143144 45143283 -103640189 + MIR3 SINE MIR 13 145 -63 182 310 42 78 chr11 45144431 45144573 -103638899 + MIR3 SINE MIR 10 146 -62 26 0 0 0 chr11 45144752 45144778 -103638694 + AT_rich Low_complexity Low_complexity 1 26 0 1999 133 14 0 chr11 45144878 45145185 -103638287 - AluSx SINE Alu 0 311 1 274 379 65 30 chr11 45145754 45145986 -103637486 + L2 LINE L2 3032 3271 -1 198 167 0 0 chr11 45146484 45146520 -103636952 + (CATA)n Simple_repeat Simple_repeat 1 36 0 257 241 0 11 chr11 45147472 45147559 -103635913 + (TA)n Simple_repeat Simple_repeat 1 86 0 1639 196 22 30 chr11 45147776 45148144 -103635328 + MLT1A1 LTR MaLR 1 365 0 866 217 24 16 chr11 45148205 45148413 -103635059 + MLT1D LTR MaLR 218 445 -60 715 260 29 6 chr11 45148481 45148654 -103634818 - MLT1D LTR MaLR -328 177 1 390 307 128 24 chr11 45148689 45148940 -103634532 - L1MC/D LINE L1 -2258 5550 5274 402 283 67 84 chr11 45148989 45149392 -103634080 - L1MC/D LINE L1 -993 5153 4758 348 308 43 54 chr11 45149529 45149805 -103633667 - L1MC/D LINE L1 -3625 2521 2249 464 266 30 18 chr11 45151194 45151363 -103632109 - LTR37B LTR ERV1 -18 450 280 3046 102 20 13 chr11 45151371 45151822 -103631650 - L1PA10 LINE L1 -31 6137 5684 4010 147 24 4 chr11 45151849 45152524 -103630948 + L1PA16 LINE L1 5476 6163 -3 683 214 14 101 chr11 45152526 45152802 -103630670 - LTR37B LTR ERV1 -216 252 1 2150 113 0 25 chr11 45153477 45153796 -103629676 - AluSq SINE Alu -2 311 1 267 281 29 101 chr11 45153799 45153938 -103629534 + MIR3 SINE MIR 47 175 -33 716 231 102 22 chr11 45153966 45154269 -103629203 - LTR16A LTR ERVL -68 382 16 1724 128 4 0 chr11 45154781 45155047 -103628425 + L1PA13 LINE L1 5897 6163 0 2374 89 0 0 chr11 45155634 45155938 -103627534 - AluY SINE Alu -7 304 1 252 331 84 16 chr11 45155985 45156169 -103627303 - MIR SINE MIR -50 212 19 374 323 101 6 chr11 45156364 45156522 -103626950 - MIR SINE MIR -58 150 20 9453 173 4 30 chr11 45157192 45159040 -103624432 + L1P LINE L1 952 2752 -3394 2075 164 90 10 chr11 45159355 45159757 -103623715 + Tigger2a DNA MER2_type 1 434 0 2356 203 31 71 chr11 45159773 45160410 -103623062 + LTR9 LTR ERV1 1 612 0 27 29 0 0 chr11 45160716 45160750 -103622722 + AT_rich Low_complexity Low_complexity 1 34 0 359 336 52 48 chr11 45160779 45161068 -103622404 - L2 LINE L2 -4 3309 3020 513 332 35 17 chr11 45161438 45161670 -103621802 + MLT2E LTR ERVL 346 581 -47 1870 156 41 3 chr11 45161675 45161990 -103621482 + L1P3 LINE L1 8 334 -6127 434 302 93 20 chr11 45162684 45163121 -103620351 + L1MEd LINE L1 1044 1508 -4621 227 194 30 30 chr11 45163205 45163272 -103620200 + MLT1J LTR MaLR 97 163 -348 521 328 28 35 chr11 45163800 45164008 -103619464 + L1MEc LINE L1 1194 1402 -4994 2434 90 0 0 chr11 45164008 45164319 -103619153 + AluY SINE Alu 1 311 0 521 328 28 35 chr11 45164319 45164711 -103618761 + L1MEc LINE L1 1402 1790 -4606 2808 113 88 4 chr11 45164834 45165301 -103618171 + LTR1 LTR ERV1 280 785 0 401 248 177 7 chr11 45165465 45165606 -103617866 - MLT1I LTR MaLR -155 254 90 282 302 9 0 chr11 45165791 45165897 -103617575 - MER103 DNA DNA 0 166 60 3052 208 15 5 chr11 45166349 45167012 -103616460 - L1MB4 LINE L1 -6 6174 5505 274 410 0 0 chr11 45167615 45167720 -103615752 + MIR SINE MIR 1 105 -157 214 170 0 64 chr11 45167734 45167781 -103615691 - L2 LINE L2 0 3272 3229 449 236 57 8 chr11 45167894 45168017 -103615455 + MIR SINE MIR 120 248 -14 327 281 5 0 chr11 45168019 45168117 -103615355 - MIR SINE MIR -74 134 34 312 111 0 0 chr11 45168150 45168204 -103615268 + (GA)n Simple_repeat Simple_repeat 1 54 0 286 333 23 0 chr11 45168648 45168777 -103614695 - MER94 DNA DNA -2 132 1 2174 107 0 10 chr11 45169549 45169849 -103613623 + AluSq SINE Alu 17 313 0 200 222 167 0 chr11 45170506 45170560 -103612912 + MIR SINE MIR 200 262 0 355 323 112 36 chr11 45170603 45170826 -103612646 + MIR SINE MIR 11 250 -12 422 240 10 10 chr11 45171266 45171370 -103612102 + LTR16C LTR ERVL 386 489 -2 2185 222 55 71 chr11 45171556 45172217 -103611255 - MLT1E1 LTR MaLR -2 652 3 286 281 129 7 chr11 45172469 45172608 -103610864 + MIR SINE MIR 95 250 -12 518 303 88 34 chr11 45173182 45173420 -103610052 - MIR SINE MIR -5 257 7 237 328 69 23 chr11 45174558 45174689 -103608783 + MIR SINE MIR 59 195 -67 553 13 26 13 chr11 45175133 45175210 -103608262 - AluY SINE Alu -11 298 221 421 347 85 5 chr11 45175922 45176121 -103607351 + MIR SINE MIR 3 217 -45 279 311 99 51 chr11 45176404 45176758 -103606714 + MLT1I LTR MaLR 39 409 0 1734 275 28 16 chr11 45177084 45177589 -103605883 - LTR40a LTR ERVL 0 519 9 443 324 45 0 chr11 45177752 45177931 -103605541 - HERVL68 LTR ERVL -66 2971 2785 262 273 91 30 chr11 45177907 45178006 -103605466 - MER70-int LTR ERVL -349 4674 4570 * 2146 116 0 3 chr11 45179230 45179523 -103603949 - AluSg SINE Alu -18 292 1 2057 185 69 5 chr11 45179808 45180198 -103603274 - MSTA LTR MaLR 0 428 14 31 0 0 0 chr11 45180646 45180677 -103602795 + AT_rich Low_complexity Low_complexity 1 31 0 313 224 83 70 chr11 45181150 45181306 -103602166 + MIR SINE MIR 104 261 -1 236 328 0 0 chr11 45181785 45181852 -103601620 + (TATG)n Simple_repeat Simple_repeat 1 67 0 1300 204 71 96 chr11 45182458 45182967 -103600505 + LTR54B LTR ERV1 3 498 0 1493 212 80 9 chr11 45185385 45185710 -103597762 - MER7A DNA MER2_type 0 346 1 410 255 129 34 chr11 45187399 45187662 -103595810 - LTR43 LTR ERV1 -124 478 191 362 300 27 0 chr11 45188153 45188263 -103595209 + MER5A DNA MER1_type 1 113 -76 330 305 102 25 chr11 45188350 45188468 -103595004 - L2 LINE L2 -5 3267 3141 201 262 0 66 chr11 45189417 45189478 -103593994 + L2 LINE L2 3257 3313 0 300 313 30 69 chr11 45189725 45189856 -103593616 + L2 LINE L2 3182 3307 -6 419 338 28 0 chr11 45189859 45190004 -103593468 - LTR16C LTR ERVL -3 488 340 551 253 89 39 chr11 45190352 45190633 -103592839 - L1MDa LINE L1 -6194 346 52 632 280 47 14 chr11 45191506 45191720 -103591752 + MIR SINE MIR 39 259 -3 2012 152 27 38 chr11 45192081 45192449 -103591023 + THE1B LTR MaLR 1 364 0 11203 110 6 0 chr11 45192449 45194019 -103589453 + THE1B-int LTR MaLR 1 1580 0 1979 168 27 41 chr11 45194019 45194388 -103589084 + THE1B LTR MaLR 1 364 0 314 277 12 0 chr11 45194518 45194601 -103588871 + MIR3 SINE MIR 122 205 -3 377 244 62 56 chr11 45194890 45195050 -103588422 - MIR SINE MIR -55 207 47 308 278 111 0 chr11 45195394 45195502 -103587970 - MIR SINE MIR -43 219 100 367 317 22 97 chr11 45196271 45196498 -103586974 + L2 LINE L2 3040 3249 -23 1193 347 34 0 chr11 45196581 45196999 -103586473 + LTR16A LTR ERVL 17 448 -2 752 293 55 61 chr11 45197516 45197974 -103585498 - LTR16A1 LTR ERVL -2 455 1 1479 325 60 7 chr11 45197991 45198797 -103584675 - L2 LINE L2 -4 3309 2452 1788 129 0 0 chr11 45198920 45199198 -103584274 - L1PA13 LINE L1 -4 6159 5882 3229 296 134 27 chr11 45199612 45201236 -103582236 - L2 LINE L2 -867 2447 651 385 161 25 34 chr11 45201525 45201643 -103581829 + CT-rich Low_complexity Low_complexity 1 117 0 1768 207 29 0 chr11 45202722 45203099 -103580373 + MLT1B LTR MaLR 3 390 0 2049 122 35 0 chr11 45203439 45203725 -103579747 + AluSx SINE Alu 3 298 -14 305 375 0 0 chr11 45203863 45203975 -103579497 - L2 LINE L2 -12 3301 3190 180 0 0 0 chr11 45204023 45204043 -103579429 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2186 123 3 0 chr11 45204057 45204366 -103579106 + AluSp SINE Alu 1 310 -3 390 246 57 8 chr11 45204395 45204517 -103578955 + L2 LINE L2 3182 3309 -4 369 295 74 50 chr11 45204758 45205016 -103578456 - L1ME4a LINE L1 -25 6096 5833 1834 183 0 3 chr11 45205022 45205334 -103578138 + AluSx SINE Alu 1 311 -1 1068 122 0 0 chr11 45205551 45205707 -103577765 - L1PA13 LINE L1 -14 6149 5994 2106 103 3 0 chr11 45205707 45205998 -103577474 + L1PA13 LINE L1 5683 5974 -194 354 172 152 20 chr11 45206017 45206116 -103577356 - L1MA7 LINE L1 -22 6269 6158 957 324 31 55 chr11 45206305 45206380 -103577092 - L2 LINE L2 0 3313 3238 207 88 0 0 chr11 45206380 45206414 -103577058 + (TTAA)n Simple_repeat Simple_repeat 2 35 0 957 324 31 55 chr11 45206414 45206850 -103576622 - L2 LINE L2 -75 3238 2814 506 322 25 34 chr11 45206867 45207103 -103576369 - L2 LINE L2 -1849 1465 1232 278 347 91 0 chr11 45207672 45207793 -103575679 + MER117 DNA MER1_type 11 142 -55 21 0 0 0 chr11 45208021 45208042 -103575430 + AT_rich Low_complexity Low_complexity 1 21 0 960 386 49 17 chr11 45208162 45208871 -103574601 - L2 LINE L2 -406 2908 2177 290 315 77 52 chr11 45209291 45209615 -103573857 + L2 LINE L2 1870 2201 -1113 29 60 0 0 chr11 45210432 45210482 -103572990 + AT_rich Low_complexity Low_complexity 1 50 0 200 171 65 16 chr11 45211712 45211835 -103571637 + (TA)n Simple_repeat Simple_repeat 2 130 0 404 140 58 18 chr11 45211852 45212023 -103571449 + (TA)n Simple_repeat Simple_repeat 2 179 0 345 183 44 50 chr11 45212091 45212271 -103571201 + (TA)n Simple_repeat Simple_repeat 1 179 0 202 261 0 0 chr11 45212401 45212447 -103571025 + (TGGA)n Simple_repeat Simple_repeat 1 46 0 459 335 72 48 chr11 45213412 45213705 -103569767 - MERVL LTR ERVL -693 5071 4772 397 319 112 24 chr11 45214017 45214466 -103569006 - MERVL LTR ERVL -1279 4206 3861 539 368 48 31 chr11 45215206 45215682 -103567790 - MERVL LTR ERVL -2641 3123 2640 23 33 0 0 chr11 45215714 45215744 -103567728 + AT_rich Low_complexity Low_complexity 1 30 0 356 291 103 36 chr11 45215954 45216233 -103567239 + LTR16B LTR ERVL 148 463 0 642 128 0 0 chr11 45216631 45216733 -103566739 - L1PA15 LINE L1 -2 6163 6062 1102 313 119 20 chr11 45216739 45217478 -103565994 - HAL1 LINE L1 -1593 914 103 2357 140 3 6 chr11 45218172 45218537 -103564935 + THE1B LTR MaLR 1 364 0 302 232 0 42 chr11 45219146 45219241 -103564231 + L1MC4 LINE L1 6614 6704 -1338 214 207 17 0 chr11 45219241 45219299 -103564173 + (TA)n Simple_repeat Simple_repeat 1 59 0 649 311 57 86 chr11 45220349 45220881 -103562591 + L1MEc LINE L1 36 582 -5814 3213 159 20 6 chr11 45220881 45221423 -103562049 + MER41C LTR ERV1 5 554 0 649 311 57 86 chr11 45221423 45222062 -103561410 + L1MEc LINE L1 582 1173 -5223 230 351 14 0 chr11 45222111 45222185 -103561287 - MLT1K LTR MaLR -347 241 167 767 313 78 17 chr11 45222204 45222498 -103560974 - MLT1I LTR MaLR -2 407 96 1401 131 14 0 chr11 45222557 45222778 -103560694 + LTR1 LTR ERV1 29 252 -533 15129 105 4 12 chr11 45222915 45225225 -103558247 + L1PA7 LINE L1 2292 4583 -1563 6677 72 8 1 chr11 45225225 45226549 -103556923 + L1PA7 LINE L1 4809 6138 -16 273 89 0 0 chr11 45226551 45226596 -103556876 + (TA)n Simple_repeat Simple_repeat 2 46 0 850 263 17 13 chr11 45227061 45227293 -103556179 + L1M4 LINE L1 20 252 -6290 1951 197 13 26 chr11 45227298 45227684 -103555788 + MSTB LTR MaLR 46 426 0 6992 196 24 12 chr11 45227684 45229050 -103554422 + MSTB-int LTR MaLR 1 1383 -268 2146 134 0 3 chr11 45229232 45229524 -103553948 - AluSx SINE Alu -21 291 1 2298 162 10 31 chr11 45229524 45229931 -103553541 + MSTB LTR MaLR 29 426 0 492 212 26 0 chr11 45229934 45230047 -103553425 + L1M4 LINE L1 4439 4554 -1592 7752 20 0 0 chr11 45230097 45231179 -103552293 + L1P1 LINE L1 4481 5562 -593 6846 13 1 0 chr11 45231179 45231957 -103551515 + L1PA2 LINE L1 5373 6154 -1 191 81 54 0 chr11 45232979 45233016 -103550456 + A-rich Low_complexity Low_complexity 2 40 0 1519 172 0 0 chr11 45233310 45233554 -103549918 + AluJo SINE Alu 57 300 -12 1578 122 36 0 chr11 45233555 45233776 -103549696 + AluSg/x SINE Alu 66 294 -16 7436 196 18 6 chr11 45233778 45235373 -103548099 + L1 LINE L1 2778 4392 -1754 966 142 0 0 chr11 45235373 45235514 -103547958 + AluJb SINE Alu 160 300 -12 752 168 7 0 chr11 45235595 45235750 -103547722 + L1 LINE L1 4397 4552 -1594 315 329 34 27 chr11 45285751 45285897 -103497575 - MIR3 SINE MIR -52 156 10 1638 177 77 32 chr11 45286522 45286865 -103496607 + MLT2C1 LTR ERVL 3 366 -31 272 70 23 0 chr11 45286865 45286908 -103496564 + (CA)n Simple_repeat Simple_repeat 2 45 0 1638 177 77 32 chr11 45286908 45286942 -103496530 + MLT2C1 LTR ERVL 366 397 0 799 245 215 11 chr11 45286993 45287360 -103496112 - MLT1J2 LTR MaLR -8 442 1 26 74 0 0 chr11 45289477 45289531 -103493941 + AT_rich Low_complexity Low_complexity 1 54 0 2125 129 7 0 chr11 45289866 45290168 -103493304 + AluSx SINE Alu 1 304 -8 374 172 0 0 chr11 45290950 45291014 -103492458 - Alu SINE Alu 0 300 237 193 308 64 0 chr11 45291022 45291100 -103492372 + MIR SINE MIR 124 206 -56 3795 117 33 11 chr11 45291365 45291468 -103492004 - L1PA12 LINE L1 0 6168 6069 2546 95 11 19 chr11 45291468 45291846 -103491626 - THE1C LTR MaLR 0 375 1 3795 117 33 11 chr11 45291846 45292350 -103491122 - L1PA12 LINE L1 -99 6069 5548 1357 133 20 5 chr11 45293185 45293388 -103490084 - AluSg/x SINE Alu -8 304 99 225 0 0 0 chr11 45293671 45293696 -103489776 + (TC)n Simple_repeat Simple_repeat 2 26 0 336 24 0 0 chr11 45293698 45293739 -103489733 + (CA)n Simple_repeat Simple_repeat 1 41 0 200 114 29 0 chr11 45293952 45293987 -103489485 + (TTG)n Simple_repeat Simple_repeat 1 36 0 941 217 22 60 chr11 45293991 45294258 -103489214 + MLT1A1 LTR MaLR 4 260 -105 407 102 17 0 chr11 45294392 45294451 -103489021 + MLT1A1 LTR MaLR 314 373 -1 212 241 0 35 chr11 45294649 45294707 -103488765 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 4856 211 69 97 chr11 45295556 45297041 -103486431 + L1MC3 LINE L1 5476 6859 -926 5721 165 19 14 chr11 45297071 45298679 -103484793 - L1MA8 LINE L1 -5 7307 5690 2316 138 3 35 chr11 45298679 45299055 -103484417 + THE1B LTR MaLR 1 364 0 1312 103 5 0 chr11 45299055 45299240 -103484232 + THE1B-int LTR MaLR 1 186 -1394 1867 155 3 14 chr11 45299240 45299537 -103483935 + AluSq SINE Alu 1 294 -19 390 324 0 0 chr11 45300044 45300152 -103483320 + MIR SINE MIR 46 153 -109 1028 250 81 18 chr11 45300171 45300443 -103483029 - L1MC4a LINE L1 -917 6891 6603 2438 244 70 21 chr11 45300471 45300561 -103482911 + L1MC4a LINE L1 6942 7026 -782 186 43 0 0 chr11 45300561 45300584 -103482888 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 2438 244 70 21 chr11 45300584 45301368 -103482104 + L1MC4a LINE L1 7026 7808 0 185 62 0 31 chr11 45301482 45301514 -103481958 + (TTA)n Simple_repeat Simple_repeat 1 31 0 802 187 113 30 chr11 45301958 45302159 -103481313 + MLT1C LTR MaLR 1 218 -249 1791 87 31 8 chr11 45302159 45302413 -103481059 + MLT2A1 LTR ERVL 1 260 -184 18455 56 19 1 chr11 45302418 45304701 -103478771 + HERVL LTR ERVL 3317 5640 -14 1010 212 39 12 chr11 45304701 45304715 -103478757 + MLT1C LTR MaLR 200 212 -255 2868 87 36 25 chr11 45304715 45305154 -103478318 + MLT2A1 LTR ERVL 1 444 0 1010 212 39 12 chr11 45305154 45305398 -103478074 + MLT1C LTR MaLR 212 465 -2 1388 123 10 5 chr11 45306078 45306282 -103477190 + AluSx SINE Alu 36 240 -72 4105 102 3 3 chr11 45306382 45306948 -103476524 + THE1B-int LTR MaLR 233 798 -782 2664 84 0 0 chr11 45306947 45307292 -103476180 + THE1B-int LTR MaLR 1233 1577 -3 * 2244 144 3 35 chr11 45307295 45307671 -103475801 + THE1B LTR MaLR 1 364 0 215 245 0 0 chr11 45307724 45307777 -103475695 + T-rich Low_complexity Low_complexity 5 57 0 8138 237 72 24 chr11 45307823 45310859 -103472613 - L1MA8 LINE L1 -1709 5458 2475 1958 139 41 35 chr11 45310859 45311226 -103472246 + THE1C LTR MaLR 5 373 -2 8138 237 72 24 chr11 45311226 45312156 -103471316 - L1MA8 LINE L1 -4692 2475 1591 1532 205 50 40 chr11 45313069 45313328 -103470144 + L1MC3 LINE L1 6870 7136 -649 1608 215 3 3 chr11 45313328 45313630 -103469842 - AluJb SINE Alu -10 302 1 1532 205 50 40 chr11 45313630 45313794 -103469678 + L1MC3 LINE L1 7136 7297 -488 198 0 0 0 chr11 45313816 45313838 -103469634 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 5645 43 20 0 chr11 45313844 45314535 -103468937 - L1PA5 LINE L1 -2 6152 5448 23 0 0 0 chr11 45314638 45314661 -103468811 + AT_rich Low_complexity Low_complexity 1 23 0 191 36 36 0 chr11 45314817 45314845 -103468627 + (TAA)n Simple_repeat Simple_repeat 3 31 0 285 305 92 15 chr11 45315420 45315551 -103467921 + MIR SINE MIR 78 218 -44 240 314 57 48 chr11 45315531 45315636 -103467836 - MIR SINE MIR -156 106 1 * 198 267 139 50 chr11 45315796 45315897 -103467575 + L2 LINE L2 3201 3310 -3 813 93 0 47 chr11 45316119 45316248 -103467224 + L1PA8 LINE L1 6037 6159 -13 391 340 148 27 chr11 45316375 45316707 -103466765 + L2 LINE L2 2714 3091 -181 213 318 0 0 chr11 45316904 45316970 -103466502 + CT-rich Low_complexity Low_complexity 3 68 0 263 353 43 0 chr11 45317407 45317523 -103465949 - MIR3 SINE MIR -2 206 86 29 47 0 0 chr11 45318435 45318478 -103464994 + AT_rich Low_complexity Low_complexity 1 43 0 29 0 0 0 chr11 45318591 45318620 -103464852 + AT_rich Low_complexity Low_complexity 1 29 0 280 294 126 45 chr11 45318711 45318997 -103464475 + L1ME LINE L1 5350 5658 -463 3098 214 28 0 chr11 45319155 45319766 -103463706 + L1PA15 LINE L1 1 628 -6159 2654 215 28 14 chr11 45319746 45320309 -103463163 + L1PA15 LINE L1 1153 1723 -5064 * 13010 224 18 19 chr11 45320329 45323061 -103460411 + L1PA15 LINE L1 1839 4571 -2226 1271 203 45 31 chr11 45323061 45323347 -103460125 + AluJo SINE Alu 3 292 -20 13010 224 18 19 chr11 45323347 45323385 -103460087 + L1PA15 LINE L1 4571 4608 -2189 4453 119 41 46 chr11 45323385 45324168 -103459304 - MER4E LTR ERV1 0 779 1 13010 224 18 19 chr11 45324168 45324493 -103458979 + L1PA15 LINE L1 4608 4932 -1865 1976 122 25 69 chr11 45324493 45324622 -103458850 + THE1C LTR MaLR 1 134 -241 2050 156 0 6 chr11 45324622 45324937 -103458535 - AluSq SINE Alu 0 313 1 1976 122 25 69 chr11 45324937 45325199 -103458273 + THE1C LTR MaLR 134 375 0 13010 224 18 19 chr11 45325199 45325600 -103457872 + L1PA15 LINE L1 4932 5322 -1475 2047 160 45 27 chr11 45325600 45326135 -103457337 + MLT2A2 LTR ERVL 1 545 -9 5477 144 6 6 chr11 45326135 45327638 -103455834 + L1PA15 LINE L1 5309 6808 -8 195 325 123 26 chr11 45327992 45328146 -103455326 + MIR SINE MIR 79 247 -15 1167 287 60 57 chr11 45329537 45330190 -103453282 - L2 LINE L2 0 3313 2668 240 226 0 0 chr11 45331009 45331071 -103452401 + (ATG)n Simple_repeat Simple_repeat 2 63 0 706 211 14 14 chr11 45331381 45331528 -103451944 - MER5A DNA MER1_type -40 149 3 234 288 144 38 chr11 45333225 45333357 -103450115 - MIR SINE MIR -115 147 2 308 285 52 64 chr11 45333547 45333719 -103449753 - MIR SINE MIR -87 175 6 246 301 136 10 chr11 45334732 45334835 -103448637 + MIR SINE MIR 141 256 -6 24 0 0 0 chr11 45335032 45335056 -103448416 + AT_rich Low_complexity Low_complexity 1 24 0 307 316 6 63 chr11 45335198 45335356 -103448116 + MER5B DNA MER1_type 30 178 0 709 224 98 17 chr11 45335846 45336081 -103447391 - L1ME LINE L1 -515 5647 5372 1117 225 103 13 chr11 45336090 45336401 -103447071 + L1ME3 LINE L1 5615 5953 -209 516 274 0 0 chr11 45336484 45336608 -103446864 + MER45A DNA AcHobo 55 178 0 647 253 6 19 chr11 45336612 45336774 -103446698 + L1ME3 LINE L1 5996 6155 -7 669 323 36 5 chr11 45336922 45337145 -103446327 - MIR SINE MIR -1 261 32 196 277 34 118 chr11 45338548 45338667 -103444805 - MIR3 SINE MIR -5 203 95 297 287 15 7 chr11 45339126 45339262 -103444210 + (TA)n Simple_repeat Simple_repeat 2 138 0 396 365 51 19 chr11 45340024 45340238 -103443234 - MIR SINE MIR -30 232 12 1696 182 70 14 chr11 45340802 45341171 -103442301 - MLT1B LTR MaLR 0 390 1 306 368 41 15 chr11 45341455 45341721 -103441751 + MLT1K LTR MaLR 311 583 -5 230 302 0 16 chr11 45341872 45341935 -103441537 - L2 LINE L2 -1 3271 3210 501 263 52 33 chr11 45341935 45342148 -103441324 + MER106A DNA MER1_type 5 221 -15 279 273 94 75 chr11 45342646 45342913 -103440559 - MLT1L LTR MaLR -199 416 145 368 246 8 0 chr11 45343016 45343138 -103440334 + (TA)n Simple_repeat Simple_repeat 1 123 0 1768 197 139 17 chr11 45343514 45343980 -103439492 - MER63 DNA MER1_type -1 1059 537 3139 200 12 5 chr11 45344061 45344711 -103438761 + L1MD1 LINE L1 5588 6242 0 189 344 109 10 chr11 45344827 45345019 -103438453 + L2 LINE L2 2148 2358 -956 240 301 0 12 chr11 45345022 45345105 -103438367 + L1ME1 LINE L1 4873 4954 -1192 383 252 28 56 chr11 45345129 45345947 -103437525 + L1ME1 LINE L1 4942 5880 -286 1822 185 10 0 chr11 45345947 45346249 -103437223 + AluJo SINE Alu 1 305 -7 383 252 28 56 chr11 45346249 45346529 -103436943 + L1ME1 LINE L1 5880 6166 0 749 269 35 10 chr11 45347672 45347904 -103435568 + MLT1H LTR MaLR 28 244 -305 3660 71 2 2 chr11 45347992 45348469 -103435003 + L1PA6 LINE L1 5673 6149 -5 557 311 183 32 chr11 45348868 45349360 -103434112 + MLT1K LTR MaLR 5 570 -18 286 312 7 71 chr11 45350434 45350575 -103432897 - MIR SINE MIR -75 187 56 245 265 59 0 chr11 45350604 45350672 -103432800 - L2 LINE L2 0 3272 3201 1571 233 37 27 chr11 45351995 45352510 -103430962 - Charlie1b DNA MER1_type -3 520 1 240 333 85 54 chr11 45352634 45353024 -103430448 + L2 LINE L2 2912 3313 0 406 311 37 22 chr11 45353050 45353185 -103430287 + MIR SINE MIR 20 156 -106 553 337 98 34 chr11 45353188 45353666 -103429806 - L2 LINE L2 -1 3312 2804 236 346 0 19 chr11 45353676 45353780 -103429692 + MIR SINE MIR 159 260 -2 234 0 0 0 chr11 45354018 45354044 -103429428 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 42172 40 23 1 chr11 45354047 45360040 -103423432 - L1PA2 LINE L1 -25 6130 1 961 292 35 16 chr11 45360641 45360953 -103422519 - MLT1I LTR MaLR -29 380 63 319 336 65 70 chr11 45361063 45361184 -103422288 + MIR SINE MIR 28 149 -113 3999 152 27 4 chr11 45361184 45361877 -103421595 + L1PA16 LINE L1 5452 6160 -6 319 336 65 70 chr11 45361877 45361984 -103421488 + MIR SINE MIR 149 255 -7 197 358 133 28 chr11 45361987 45362339 -103421133 + L2 LINE L2 1789 2177 -1137 382 298 147 22 chr11 45362346 45362571 -103420901 + MIR SINE MIR 5 257 -5 471 340 19 12 chr11 45362827 45363083 -103420389 + MIR SINE MIR 1 258 -4 21 0 0 0 chr11 45364806 45364827 -103418645 + AT_rich Low_complexity Low_complexity 1 21 0 264 339 60 18 chr11 45365105 45365323 -103418149 + L1MC/D LINE L1 5510 5736 -2072 21 36 0 0 chr11 45365327 45365355 -103418117 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 45365941 45365963 -103417509 + AT_rich Low_complexity Low_complexity 1 22 0 228 301 168 0 chr11 45366254 45366367 -103417105 - L2 LINE L2 -1 3312 3181 1518 203 3 10 chr11 45366396 45366707 -103416765 + AluJo SINE Alu 1 309 -3 1162 249 40 43 chr11 45368349 45368747 -103414725 + MLT2C1 LTR ERVL 1 397 0 28 91 0 0 chr11 45368944 45369021 -103414451 + AT_rich Low_complexity Low_complexity 1 77 0 1270 157 9 0 chr11 45369201 45369418 -103414054 - AluJo SINE Alu -10 302 84 22 0 0 0 chr11 45370627 45370649 -103412823 + AT_rich Low_complexity Low_complexity 1 22 0 298 281 9 129 chr11 45371248 45371458 -103412014 + L2 LINE L2 3088 3272 0 191 237 0 0 chr11 45371534 45371572 -103411900 + MIR SINE MIR 157 194 -68 378 263 11 11 chr11 45372687 45372782 -103410690 - MIR3 SINE MIR -54 154 60 301 261 51 70 chr11 45372892 45373049 -103410423 + MIR SINE MIR 69 222 -40 371 318 97 13 chr11 45374424 45374578 -103408894 + MER5B DNA MER1_type 2 168 -10 189 107 0 0 chr11 45374763 45374791 -103408681 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 332 293 91 24 chr11 45374923 45375131 -103408341 - L2 LINE L2 -167 3105 2884 2575 196 30 3 chr11 45375158 45375746 -103407726 - MER39 LTR ERV1 0 707 20 4533 212 48 85 chr11 45376211 45377780 -103405692 + L1M4 LINE L1 17 1527 -5015 210 236 0 0 chr11 45377783 45377838 -103405634 + (CA)n Simple_repeat Simple_repeat 2 56 0 461 223 10 19 chr11 45377838 45377941 -103405531 - Tigger7 DNA MER2_type 0 2587 2486 6131 62 1 15 chr11 45377942 45378761 -103404711 - L1PA4 LINE L1 -3 6152 5345 333 349 31 8 chr11 45379115 45379244 -103404228 + MIR SINE MIR 45 176 -86 460 326 126 33 chr11 45379325 45379745 -103403727 - L3 LINE CR1 -785 792 334 22 0 0 0 chr11 45379787 45379809 -103403663 + AT_rich Low_complexity Low_complexity 1 22 0 334 338 29 7 chr11 45380909 45381045 -103402427 - MIR SINE MIR -91 171 33 354 371 81 31 chr11 45381153 45381474 -103401998 + L2 LINE L2 2936 3272 0 243 146 0 0 chr11 45381535 45381576 -103401896 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 228 163 0 0 chr11 45383387 45383430 -103400042 + (CA)n Simple_repeat Simple_repeat 2 44 0 261 250 83 9 chr11 45383434 45383542 -103399930 - L1ME4a LINE L1 -4 6117 6002 598 270 17 23 chr11 45383560 45383734 -103399738 - L2 LINE L2 0 3313 3141 1310 270 127 7 chr11 45383750 45384169 -103399303 + LTR33 LTR ERVL 48 516 -5 2443 113 0 0 chr11 45384210 45384539 -103398933 + THE1B LTR MaLR 34 362 -2 221 220 17 34 chr11 45384612 45384671 -103398801 - L2 LINE L2 -219 3053 2996 270 81 0 0 chr11 45384713 45384750 -103398722 + (GA)n Simple_repeat Simple_repeat 2 38 0 363 253 79 56 chr11 45384809 45384987 -103398485 - L1ME4a LINE L1 -230 5891 5710 191 299 182 0 chr11 45386322 45386399 -103397073 - MIR SINE MIR -108 154 64 533 338 62 44 chr11 45386907 45387182 -103396290 + L2 LINE L2 2993 3272 0 2235 123 0 3 chr11 45387200 45387502 -103395970 + AluSp SINE Alu 1 301 -12 1368 232 25 22 chr11 45387758 45388124 -103395348 - LTR52 LTR ERVL -25 396 30 930 275 54 80 chr11 45388133 45388522 -103394950 + MLT1E LTR MaLR 52 430 -163 240 318 152 0 chr11 45388773 45388905 -103394567 - MIR SINE MIR -55 207 56 1720 172 0 0 chr11 45389356 45389618 -103393854 + AluSx SINE Alu 1 262 -50 366 353 52 17 chr11 45389810 45389983 -103393489 - HAL1b LINE L1 -911 437 259 26034 65 3 1 chr11 45389993 45396123 -103387349 - L1PA5 LINE L1 -8 6146 5 281 312 7 71 chr11 45396690 45396831 -103386641 - MIR SINE MIR -75 187 56 245 265 59 0 chr11 45396860 45396928 -103386544 - L2 LINE L2 0 3272 3201 1517 233 37 27 chr11 45398251 45398766 -103384706 - Charlie1b DNA MER1_type -3 520 1 238 333 85 54 chr11 45398890 45399280 -103384192 + L2 LINE L2 2912 3313 0 406 311 37 22 chr11 45399306 45399441 -103384031 + MIR SINE MIR 20 156 -106 548 337 98 34 chr11 45399444 45399922 -103383550 - L2 LINE L2 -1 3312 2804 238 346 0 19 chr11 45399932 45400036 -103383436 + MIR SINE MIR 159 260 -2 234 0 0 0 chr11 45400274 45400300 -103383172 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 40244 39 23 1 chr11 45400301 45406295 -103377177 - L1PA2 LINE L1 -23 6132 1 860 292 35 16 chr11 45406896 45407208 -103376264 - MLT1I LTR MaLR -29 380 63 312 336 65 70 chr11 45407318 45407439 -103376033 + MIR SINE MIR 28 149 -113 3963 152 27 4 chr11 45407439 45408132 -103375340 + L1PA16 LINE L1 5452 6160 -6 312 336 65 70 chr11 45408132 45408239 -103375233 + MIR SINE MIR 149 255 -7 203 358 133 28 chr11 45408242 45408594 -103374878 + L2 LINE L2 1789 2177 -1137 384 298 147 22 chr11 45408601 45408826 -103374646 + MIR SINE MIR 5 257 -5 445 363 8 0 chr11 45409082 45409338 -103374134 + MIR SINE MIR 1 258 -4 21 0 0 0 chr11 45411061 45411082 -103372390 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 45411582 45411610 -103371862 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 45412196 45412218 -103371254 + AT_rich Low_complexity Low_complexity 1 22 0 236 301 168 0 chr11 45412509 45412622 -103370850 - L2 LINE L2 -1 3312 3181 1627 193 3 10 chr11 45412651 45412962 -103370510 + AluJo SINE Alu 1 309 -3 21 0 0 0 chr11 45413016 45413037 -103370435 + AT_rich Low_complexity Low_complexity 1 21 0 186 348 0 0 chr11 45413094 45413140 -103370332 + L2 LINE L2 3141 3186 -86 463 274 49 24 chr11 45413375 45413663 -103369809 + AluJo SINE Alu 14 308 -4 180 353 22 59 chr11 45413794 45413930 -103369542 + L2 LINE L2 3141 3271 -1 2784 16 0 0 chr11 45414259 45414568 -103368904 - AluYb8 SINE Alu -9 309 1 372 360 80 25 chr11 45415241 45415441 -103368031 + MIR SINE MIR 32 242 -20 1001 201 28 19 chr11 45415482 45415696 -103367776 + MER20 DNA MER1_type 1 216 -3 2346 98 0 0 chr11 45416866 45417162 -103366310 - AluSc SINE Alu -11 298 3 2257 89 7 3 chr11 45417407 45417698 -103365774 + AluY SINE Alu 2 293 -18 183 273 20 81 chr11 45418128 45418227 -103365245 - MIR SINE MIR -71 191 99 709 292 0 16 chr11 45418315 45418500 -103364972 + MIR SINE MIR 17 198 -64 375 270 0 11 chr11 45418562 45418651 -103364821 - MER2 DNA MER2_type -256 89 2 2260 107 0 0 chr11 45418721 45419010 -103364462 - AluY SINE Alu -22 289 1 196 143 71 0 chr11 45419083 45419125 -103364347 - MIR SINE MIR -98 164 120 1303 260 78 74 chr11 45419130 45419556 -103363916 - MLT1G LTR MaLR -4 586 161 3268 132 12 6 chr11 45419556 45420050 -103363422 - LOR1a LTR ERV1 0 497 1 1303 260 78 74 chr11 45420050 45420203 -103363269 - MLT1G LTR MaLR -429 161 10 1214 285 80 43 chr11 45420672 45421346 -103362126 + L2 LINE L2 2620 3313 0 1637 245 52 21 chr11 45421689 45422154 -103361318 + MLT1D LTR MaLR 1 479 -26 676 284 73 82 chr11 45423649 45424084 -103359388 - MLT1H1 LTR MaLR 0 555 124 2094 87 0 0 chr11 45424084 45424374 -103359098 - AluY SINE Alu 0 307 18 676 284 73 82 chr11 45424374 45424497 -103358975 - MLT1H1 LTR MaLR -431 124 1 27 0 0 0 chr11 45424520 45424547 -103358925 + AT_rich Low_complexity Low_complexity 1 27 0 2426 92 0 0 chr11 45425217 45425522 -103357950 + AluY SINE Alu 1 305 -6 267 225 12 12 chr11 45425548 45425628 -103357844 + L1M4 LINE L1 2460 2539 -3607 865 210 115 92 chr11 45425884 45425928 -103357544 + MSTD LTR MaLR 1 43 -353 2098 110 7 20 chr11 45425928 45426228 -103357244 - AluSx SINE Alu -14 298 3 865 210 115 92 chr11 45426228 45426540 -103356932 + MSTD LTR MaLR 43 396 0 6238 31 2 0 chr11 45428408 45429214 -103354258 - L1PA3 LINE L1 -2738 3408 2601 16099 40 0 1 chr11 45429214 45431960 -103351512 + L1PA3 LINE L1 3407 6155 0 24 32 0 0 chr11 45432151 45432182 -103351290 + AT_rich Low_complexity Low_complexity 1 31 0 2015 218 51 28 chr11 45432186 45432714 -103350758 - MER89 LTR ERV1 -11 548 9 22 0 0 0 chr11 45432869 45432891 -103350581 + AT_rich Low_complexity Low_complexity 1 22 0 970 217 44 0 chr11 45433431 45433634 -103349838 - MER20 DNA MER1_type -1 218 7 208 329 124 29 chr11 45433663 45433800 -103349672 + MER5A DNA MER1_type 39 188 -1 277 312 28 9 chr11 45433810 45433919 -103349553 + L3 LINE CR1 1208 1318 -259 286 361 46 15 chr11 45433969 45434099 -103349373 + L3 LINE CR1 1430 1563 -14 247 269 65 65 chr11 45434230 45434338 -103349134 - MER5B DNA MER1_type -4 174 67 291 326 72 23 chr11 45434339 45434497 -103348975 - MIR SINE MIR -68 140 19 404 332 82 20 chr11 45435134 45435378 -103348094 - MIR SINE MIR 0 262 4 308 333 87 13 chr11 45436772 45436922 -103346550 - MIR SINE MIR -70 192 32 373 346 70 16 chr11 45437050 45437235 -103346237 + MIR SINE MIR 13 207 -55 512 323 57 31 chr11 45437378 45437607 -103345865 + MIR SINE MIR 7 241 -21 773 322 88 41 chr11 45437979 45438398 -103345074 - L2 LINE L2 -32 3281 2843 328 367 23 8 chr11 45438424 45438552 -103344920 + L2 LINE L2 3121 3250 -22 414 312 67 67 chr11 45438829 45439083 -103344389 + MLT1H LTR MaLR 12 268 -281 2186 125 3 3 chr11 45439083 45439394 -103344078 + AluSx SINE Alu 1 311 -1 414 312 67 67 chr11 45439394 45439527 -103343945 + MLT1H LTR MaLR 267 399 -150 240 369 19 0 chr11 45440517 45440620 -103342852 - MER81 DNA DNA -5 109 5 427 312 158 4 chr11 45440861 45441108 -103342364 - L2 LINE L2 0 3313 3029 332 154 0 77 chr11 45441108 45441186 -103342286 + MER77 LTR ERV1 368 439 -166 343 173 53 0 chr11 45441349 45441424 -103342048 + MER77 LTR ERV1 527 605 0 265 231 11 22 chr11 45441424 45441515 -103341957 + L1MEc LINE L1 1693 1782 -4614 * 500 283 108 9 chr11 45441511 45441723 -103341749 + L1ME3A LINE L1 5880 6112 -58 342 311 21 2 chr11 45441925 45442067 -103341405 + MIR SINE MIR 51 193 -63 21 0 0 0 chr11 45442397 45442418 -103341054 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr11 45442818 45442849 -103340623 + AT_rich Low_complexity Low_complexity 1 31 0 442 278 43 31 chr11 45442966 45443128 -103340344 - MIR3 SINE MIR -9 199 36 599 313 12 29 chr11 45443171 45443417 -103340055 + MIR SINE MIR 19 260 -2 192 40 0 0 chr11 45443773 45443798 -103339674 + (TG)n Simple_repeat Simple_repeat 2 26 0 260 319 85 0 chr11 45443906 45444000 -103339472 + MIR SINE MIR 45 146 -62 392 82 16 0 chr11 45444174 45444235 -103339237 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 704 191 8 0 chr11 45444235 45444361 -103339111 - FRAM SINE Alu -29 147 21 26 0 0 0 chr11 45444570 45444596 -103338876 + AT_rich Low_complexity Low_complexity 1 26 0 207 367 125 0 chr11 45444833 45444953 -103338519 - L2 LINE L2 -15 3257 3123 215 100 0 25 chr11 45445274 45445314 -103338158 + (TA)n Simple_repeat Simple_repeat 2 40 0 36 53 0 0 chr11 45445365 45445422 -103338050 + AT_rich Low_complexity Low_complexity 1 57 0 223 200 40 13 chr11 45445426 45445501 -103337971 + (TA)n Simple_repeat Simple_repeat 1 77 0 666 308 84 47 chr11 45445821 45445960 -103337512 + L2 LINE L2 2895 3027 -286 2265 84 3 32 chr11 45445960 45446268 -103337204 + AluY SINE Alu 1 299 -12 666 308 84 47 chr11 45446268 45446531 -103336941 + L2 LINE L2 3027 3312 -1 207 0 0 0 chr11 45446539 45446562 -103336910 + (T)n Simple_repeat Simple_repeat 1 23 0 2314 104 0 0 chr11 45447697 45447994 -103335478 - AluSx SINE Alu -9 303 7 334 315 49 14 chr11 45448487 45448630 -103334842 + MIR SINE MIR 49 196 -66 806 300 38 50 chr11 45448877 45449320 -103334152 + MLT1K LTR MaLR 138 575 -13 253 333 12 0 chr11 45449320 45449404 -103334068 + MIR SINE MIR 85 169 -93 2020 107 7 0 chr11 45449713 45449983 -103333489 + AluSq SINE Alu 1 272 -41 2362 143 3 6 chr11 45450726 45451091 -103332381 + THE1B LTR MaLR 1 364 0 9643 120 18 60 chr11 45451091 45452738 -103330734 + THE1B-int LTR MaLR 1 1578 -2 2608 115 3 3 chr11 45452740 45453104 -103330368 + THE1B LTR MaLR 1 364 0 2247 109 0 3 chr11 45453514 45453817 -103329655 - AluY SINE Alu -9 302 1 416 174 157 8 chr11 45453868 45453989 -103329483 + L1MC2 LINE L1 6206 6344 0 2085 79 14 0 chr11 45455185 45455476 -103327996 - L1PA7 LINE L1 -1692 4454 4160 6763 57 12 2 chr11 45455476 45457161 -103326311 + L1PA7 LINE L1 4462 6154 0 2116 128 0 0 chr11 45457347 45457643 -103325829 - AluSx SINE Alu -16 296 1 2738 82 0 0 chr11 45459205 45459560 -103323912 + THE1A LTR MaLR 1 355 0 1864 145 30 30 chr11 45459754 45460092 -103323380 - MER44D DNA MER2_type -1 608 1 312 311 19 10 chr11 45462002 45462105 -103321367 - LTR16B LTR ERVL -344 120 17 2243 91 7 13 chr11 45463054 45463362 -103320110 + AluSx SINE Alu 1 306 -6 2195 99 20 0 chr11 45464207 45464499 -103318973 - AluSp SINE Alu -13 300 3 24 53 0 0 chr11 45464742 45464780 -103318692 + AT_rich Low_complexity Low_complexity 1 38 0 195 293 17 0 chr11 45464840 45464898 -103318574 - MIR SINE MIR -65 197 139 186 222 22 0 chr11 45466316 45466361 -103317111 - MIR SINE MIR -56 206 161 2241 110 7 0 chr11 45466574 45466882 -103316590 - AluSp SINE Alu -3 310 1 52 69 0 0 chr11 45466983 45467084 -103316388 + AT_rich Low_complexity Low_complexity 1 101 0 236 186 26 53 chr11 45467150 45467263 -103316209 + (TTATA)n Simple_repeat Simple_repeat 4 113 0 67 89 0 0 chr11 45467293 45467472 -103316000 + AT_rich Low_complexity Low_complexity 1 179 0 38 75 0 0 chr11 45467752 45467832 -103315640 + AT_rich Low_complexity Low_complexity 1 80 0 2300 112 0 6 chr11 45468273 45468585 -103314887 + AluSq SINE Alu 1 310 -3 6884 55 0 3 chr11 45468612 45469483 -103313989 + L1PA5 LINE L1 5282 6149 -5 341 362 40 7 chr11 45470106 45470255 -103313217 + MIR SINE MIR 23 176 -86 205 391 55 0 chr11 45470315 45470425 -103313047 + MIR SINE MIR 35 150 -112 273 290 0 0 chr11 45471341 45471403 -103312069 - L2 LINE L2 -2 3311 3250 746 331 76 39 chr11 45471635 45472426 -103311046 + L2 LINE L2 2485 3312 -1 1372 257 25 20 chr11 45472490 45472883 -103310589 - LTR52 LTR ERVL -26 395 1 2082 130 3 0 chr11 45472932 45473232 -103310240 - AluSc SINE Alu -8 301 1 281 336 103 14 chr11 45473232 45473378 -103310094 - L2 LINE L2 -567 2747 2589 2135 142 18 34 chr11 45474930 45475310 -103308162 - THE1C LTR MaLR -1 374 1 893 113 14 0 chr11 45475310 45475451 -103308021 - THE1C-int LTR MaLR 0 1580 1438 9214 129 52 20 chr11 45475451 45476946 -103306526 - THE1C-int LTR MaLR -38 1542 1 2021 164 16 24 chr11 45476946 45477324 -103306148 - THE1C LTR MaLR 0 375 1 465 322 91 13 chr11 45477430 45477961 -103305511 + L1ME4a LINE L1 5347 5915 -206 632 306 97 85 chr11 45479611 45480094 -103303378 - L2 LINE L2 -4 3309 2821 707 231 64 11 chr11 45480155 45480419 -103303053 - L1M4 LINE L1 -1485 4661 4384 1539 114 5 0 chr11 45480429 45480639 -103302833 - AluSq SINE Alu -102 211 1 267 191 0 0 chr11 45480639 45480702 -103302770 - L1M4 LINE L1 -3259 2887 2825 2182 170 28 28 chr11 45480705 45481134 -103302338 + Tigger2a DNA MER2_type 6 434 0 477 234 130 0 chr11 45481137 45481319 -103302153 - L1M4 LINE L1 -3324 2822 2614 14633 224 19 12 chr11 45481330 45484533 -103298939 - L1PA15 LINE L1 -8 6860 3605 2237 114 3 0 chr11 45484533 45484840 -103298632 + AluSc SINE Alu 1 308 -1 14633 224 19 12 chr11 45484840 45486662 -103296810 - L1PA15 LINE L1 -3263 3605 1798 1251 107 6 0 chr11 45486683 45486851 -103296621 + AluY SINE Alu 1 169 -142 35375 68 3 7 chr11 45486911 45491653 -103291819 + L1P LINE L1 2 4723 -1423 700 35 0 0 chr11 45491911 45491996 -103291476 + L1MA1 LINE L1 5881 5965 -337 516 239 9 104 chr11 45492748 45492970 -103290502 + LTR16A1 LTR ERVL 187 387 -70 187 312 198 32 chr11 45493058 45493215 -103290257 - MIR SINE MIR -65 197 15 1684 59 0 0 chr11 45493365 45493567 -103289905 - AluY SINE Alu -10 301 100 302 353 68 0 chr11 45493736 45493869 -103289603 + MIR SINE MIR 49 190 -72 22 0 0 0 chr11 45494267 45494289 -103289183 + AT_rich Low_complexity Low_complexity 1 22 0 240 86 0 0 chr11 45494313 45494348 -103289124 + (TG)n Simple_repeat Simple_repeat 2 36 0 22 0 0 0 chr11 45494631 45494653 -103288819 + AT_rich Low_complexity Low_complexity 1 22 0 363 253 0 0 chr11 45494926 45495009 -103288463 - MER58A DNA MER1_type 0 112 30 194 301 96 0 chr11 45496024 45496097 -103287375 + MIR SINE MIR 28 107 -155 687 266 160 80 chr11 45496097 45496496 -103286976 + MLT1J2 LTR MaLR 1 431 -15 258 306 28 28 chr11 45496580 45496688 -103286784 - MIR SINE MIR -60 202 95 267 258 136 61 chr11 45496715 45496847 -103286625 + MIR SINE MIR 121 262 0 22 70 0 0 chr11 45497401 45497444 -103286028 + AT_rich Low_complexity Low_complexity 1 43 0 211 326 23 62 chr11 45498076 45498205 -103285267 + L2 LINE L2 2934 3057 -215 182 375 0 0 chr11 45498358 45498430 -103285042 + L2 LINE L2 2905 2976 -296 438 287 27 22 chr11 45498641 45498864 -103284608 - L1M4 LINE L1 -2123 4023 3800 227 213 0 16 chr11 45499150 45499211 -103284261 + (CATATA)n Simple_repeat Simple_repeat 3 62 0 437 129 0 24 chr11 45499215 45499300 -103284172 + (GGAA)n Simple_repeat Simple_repeat 2 84 0 716 123 0 0 chr11 45499536 45499650 -103283822 + AluY SINE Alu 195 308 -3 196 389 120 0 chr11 45500224 45500332 -103283140 - L2 LINE L2 0 3313 3193 * 306 248 75 105 chr11 45500330 45500463 -103283009 - L2 LINE L2 -1 3271 3143 192 429 83 0 chr11 45500522 45500655 -103282817 - L2 LINE L2 -18 3254 3111 309 333 62 16 chr11 45501184 45501313 -103282159 + L2 LINE L2 3176 3310 -3 378 279 30 55 chr11 45501455 45501656 -103281816 + MIR SINE MIR 55 250 -12 302 322 59 13 chr11 45503319 45503471 -103280001 - MIR SINE MIR -43 219 61 286 335 40 20 chr11 45503818 45503970 -103279502 + MIR SINE MIR 15 169 -93 975 127 0 4 chr11 45603989 45604708 -103178764 + HSATII Satellite Satellite 1 716 0 1107 106 0 23 chr11 45604741 45605129 -103178343 + HSATII Satellite Satellite 1 379 0 928 137 9 18 chr11 45605155 45605487 -103177985 + HSATII Satellite Satellite 1 329 -14 1047 90 1 47 chr11 45605523 45606292 -103177180 + HSATII Satellite Satellite 1 733 -1 596 163 0 7 chr11 45606267 45606402 -103177070 + (CATTC)n Satellite Satellite 2 135 0 * 525 105 0 0 chr11 45606464 45606550 -103176922 + (CATTC)n Satellite Satellite 5 90 0 1019 112 16 12 chr11 45606887 45608401 -103175071 - HSATII Satellite Satellite 0 1520 1 887 125 6 0 chr11 45608418 45608586 -103174886 - HSATII Satellite Satellite -1 169 1 1058 123 2 14 chr11 45608598 45610432 -103173040 - HSATII Satellite Satellite -72 1811 1 984 129 0 0 chr11 45610448 45610618 -103172854 - HSATII Satellite Satellite 0 170 1 870 137 0 0 chr11 45610644 45610848 -103172624 - HSATII Satellite Satellite 0 204 1 1074 124 3 14 chr11 45610870 45612726 -103170746 - HSATII Satellite Satellite -121 1835 1 953 99 0 14 chr11 45612756 45612973 -103170499 - HSATII Satellite Satellite -2 213 1 1191 164 6 2 chr11 45613087 45619678 -103163794 - ALR/Alpha Satellite centromeric -1 6615 1 1123 161 3 2 chr11 45619690 45622389 -103161083 - ALR/Alpha Satellite centromeric 0 2700 1 16142 39 1 2 chr11 45722393 45724479 -103058993 - L1P LINE L1 -1818 4328 2246 312 292 33 23 chr11 45725717 45725862 -103057610 + MIR SINE MIR 45 191 -71 309 253 32 10 chr11 45726387 45726504 -103056968 + MLT1I LTR MaLR 29 145 -264 252 248 2 103 chr11 45726638 45726755 -103056717 + MLT1G1 LTR MaLR 453 549 0 605 256 43 53 chr11 45727007 45727214 -103056258 + MER89 LTR ERV1 122 326 -233 226 0 29 29 chr11 45727414 45727449 -103056023 + (TAA)n Simple_repeat Simple_repeat 2 36 0 7541 135 9 6 chr11 45727449 45728707 -103054765 - HSMAR2 DNA Mariner -39 1263 1 191 306 32 0 chr11 45728709 45728771 -103054701 - L2 LINE L2 -1523 1791 1728 566 285 64 69 chr11 45728785 45729392 -103054080 - L1M4 LINE L1 -2000 4146 3543 21 57 0 0 chr11 45729537 45729572 -103053900 + AT_rich Low_complexity Low_complexity 1 35 0 599 164 6 124 chr11 45729615 45729792 -103053680 - MER50 LTR ERV1 -130 604 449 * 1259 112 27 31 chr11 45729781 45730004 -103053468 - MER50 LTR ERV1 -512 222 1 2182 132 16 8 chr11 45730004 45730374 -103053098 - MER50-int LTR ERV1 -8 7197 6825 715 99 10 0 chr11 45730373 45730495 -103052977 - MER50-int LTR ERV1 -1018 6187 3912 * 345 275 95 82 chr11 45730502 45730818 -103052654 - L1M4 LINE L1 -2947 3199 2880 629 231 21 0 chr11 45731228 45731371 -103052101 - MIR SINE MIR 0 262 117 1021 239 64 21 chr11 45731412 45731742 -103051730 + MER2 DNA MER2_type 1 344 0 244 256 39 39 chr11 45731826 45731904 -103051568 - MIR SINE MIR -32 230 153 608 171 154 0 chr11 45731904 45732021 -103051451 - FLAM_C SINE Alu -8 135 1 2039 72 0 0 chr11 45732032 45732281 -103051191 - AluY SINE Alu -19 292 44 380 288 14 41 chr11 45732297 45732443 -103051029 - MIR SINE MIR -119 143 2 27417 45 2 2 chr11 45733312 45737660 -103045812 - L1PA4 LINE L1 -26 6129 1782 2031 94 55 7 chr11 45737845 45738152 -103045320 + AluSx SINE Alu 1 312 0 207 265 0 0 chr11 45738385 45738434 -103045038 + (ATG)n Simple_repeat Simple_repeat 2 50 0 608 252 175 15 chr11 45738449 45738655 -103044817 - MIR SINE MIR 0 262 24 666 152 0 9 chr11 45738655 45738786 -103044686 - AluJb SINE Alu 0 312 181 680 19 58 10 chr11 45738786 45738890 -103044582 + (TTTC)n Simple_repeat Simple_repeat 1 109 0 657 168 11 34 chr11 45738898 45739077 -103044395 + CT-rich Low_complexity Low_complexity 4 178 0 346 25 0 0 chr11 45739077 45739117 -103044355 + (TC)n Simple_repeat Simple_repeat 2 41 0 2080 116 0 0 chr11 45739118 45739386 -103044086 - AluSc SINE Alu -38 271 4 251 273 0 0 chr11 45739389 45739444 -103044028 - AluJ/monomer SINE Alu -248 55 1 245 267 53 0 chr11 45739898 45739973 -103043499 - L1MC4a LINE L1 -1883 5925 5847 201 39 0 0 chr11 45739987 45740013 -103043459 + (TTA)n Simple_repeat Simple_repeat 1 26 0 2167 97 0 31 chr11 45740013 45740163 -103043309 - AluSq SINE Alu -32 281 142 2180 87 0 7 chr11 45740163 45740473 -103042999 - AluY SINE Alu 0 308 1 2167 97 0 31 chr11 45740473 45740611 -103042861 - AluSq SINE Alu -171 142 1 293 83 67 17 chr11 45740707 45740767 -103042705 + L1ME4a LINE L1 6028 6090 -31 250 265 10 71 chr11 45740814 45740912 -103042560 - MIR3 SINE MIR -32 176 85 1346 186 40 78 chr11 45741076 45741183 -103042289 + MLT1A1 LTR MaLR 1 111 -254 2117 103 38 0 chr11 45741183 45741475 -103041997 - AluSp SINE Alu -10 303 1 1346 186 40 78 chr11 45741475 45741738 -103041734 + MLT1A1 LTR MaLR 111 357 -8 290 248 212 44 chr11 45741824 45741961 -103041511 - L2 LINE L2 -1 3312 3153 1669 158 50 0 chr11 45742148 45742426 -103041046 - AluJo SINE Alu -19 293 2 1420 152 4 33 chr11 45742898 45743141 -103040331 - AluSg/x SINE Alu -9 303 68 2164 124 0 3 chr11 45743193 45743492 -103039980 - AluSx SINE Alu -14 298 1 246 345 36 0 chr11 45743870 45743954 -103039518 - MIR SINE MIR -168 94 8 506 161 21 0 chr11 45744073 45744166 -103039306 + MIR SINE MIR 151 245 -17 660 245 53 42 chr11 45744303 45744568 -103038904 - MLT1C LTR MaLR 0 467 200 192 143 0 0 chr11 45744801 45744843 -103038629 + (GA)n Simple_repeat Simple_repeat 1 42 0 584 250 89 12 chr11 45744897 45745065 -103038407 + MIR SINE MIR 75 255 -7 2305 54 41 7 chr11 45745115 45745410 -103038062 - AluY SINE Alu -6 305 1 1320 177 137 30 chr11 45745465 45745736 -103037736 + AluJb SINE Alu 1 300 -2 27 0 0 26 chr11 45745764 45745782 -103037690 + AT_rich Low_complexity Low_complexity 1 18 -19 2009 147 0 0 chr11 45745782 45746067 -103037405 - AluSx SINE Alu -27 285 1 27 0 0 26 chr11 45746067 45746086 -103037386 + AT_rich Low_complexity Low_complexity 18 37 0 2514 119 2 8 chr11 45746086 45746481 -103036991 - L1MA2 LINE L1 0 6304 5912 340 326 86 39 chr11 45747124 45747357 -103036115 - MIR SINE MIR 0 262 19 2191 121 0 3 chr11 45747359 45747665 -103035807 - AluSx SINE Alu -7 305 1 1825 168 0 13 chr11 45747665 45747974 -103035498 - AluJo SINE Alu -7 305 1 2200 108 3 0 chr11 45748251 45748548 -103034924 + AluSx SINE Alu 1 298 -14 310 244 38 30 chr11 45748586 45748717 -103034755 - L1ME4a LINE L1 -11 6110 5979 316 148 0 0 chr11 45748742 45748796 -103034676 - Alu SINE Alu -1 301 248 25 83 0 0 chr11 45748805 45748865 -103034607 + AT_rich Low_complexity Low_complexity 1 60 0 14973 176 23 15 chr11 45748996 45751047 -103032425 - L1MA4A LINE L1 -29 6976 4943 2256 109 0 0 chr11 45751047 45751340 -103032132 - AluY SINE Alu -18 293 1 14973 176 23 15 chr11 45751340 45753348 -103030124 - L1MA4A LINE L1 -2062 4943 2883 861 222 27 0 chr11 45753346 45753531 -103029941 - L1MA4A LINE L1 -6650 199 10 * 829 251 48 15 chr11 45753543 45753814 -103029658 - L1ME4a LINE L1 -294 5827 5548 21 0 0 0 chr11 45753846 45753867 -103029605 + AT_rich Low_complexity Low_complexity 1 21 0 257 306 94 0 chr11 45754228 45754313 -103029159 + MLT1L LTR MaLR 327 419 -196 2382 182 203 27 chr11 45754332 45755001 -103028471 + LTR48 LTR ERV1 1 787 0 234 171 57 138 chr11 45755013 45755066 -103028406 + MLT1L LTR MaLR 497 553 -62 2257 113 0 0 chr11 45755066 45755368 -103028104 - AluSq SINE Alu -11 302 1 234 171 57 138 chr11 45755368 45755437 -103028035 + MLT1L LTR MaLR 553 609 -6 21 36 0 0 chr11 45755592 45755620 -103027852 + AT_rich Low_complexity Low_complexity 1 28 0 679 247 45 11 chr11 45755768 45755946 -103027526 + MIR SINE MIR 79 262 0 1366 176 138 132 chr11 45755963 45756592 -103026880 - LTR27 LTR ERV1 -1 635 3 205 190 52 17 chr11 45756778 45756836 -103026636 + (CAAA)n Simple_repeat Simple_repeat 4 63 0 775 261 87 42 chr11 45757111 45757490 -103025982 - MLT1I LTR MaLR -7 402 7 215 234 0 0 chr11 45757961 45758008 -103025464 + L2 LINE L2 3266 3312 -1 316 211 173 0 chr11 45758346 45758450 -103025022 + MLT1H LTR MaLR 373 494 -55 774 205 124 81 chr11 45758456 45758524 -103024948 - MER58A DNA MER1_type -2198 222 158 3383 190 60 42 chr11 45758524 45759334 -103024138 - LTR1B LTR ERV1 0 826 2 774 205 124 81 chr11 45759334 45759475 -103023997 - MER58A DNA MER1_type -2262 158 4 269 241 0 0 chr11 45759475 45759533 -103023939 + MLT1H LTR MaLR 498 555 0 678 310 25 8 chr11 45760114 45760359 -103023113 + MIR SINE MIR 12 260 -2 909 284 78 12 chr11 45760702 45761037 -103022435 - LTR16A LTR ERVL -14 436 80 183 299 0 15 chr11 45761084 45761151 -103022321 - MIR SINE MIR -21 241 176 1630 166 12 127 chr11 45761297 45761652 -103021820 - MER93b LTR ERV1 -5 368 66 1696 46 0 0 chr11 45761652 45761849 -103021623 + AluY SINE Alu 99 295 -16 1630 166 12 127 chr11 45761849 45761909 -103021563 - MER93b LTR ERV1 -307 66 1 378 280 20 10 chr11 45762015 45762115 -103021357 - MIR SINE MIR -63 145 45 602 249 127 47 chr11 45762631 45762844 -103020628 - MIR SINE MIR -2 260 31 248 335 37 67 chr11 45763151 45763315 -103020157 + MIR SINE MIR 23 181 -81 348 276 103 35 chr11 45763497 45763541 -103019931 + L2 LINE L2 3159 3199 -114 960 199 25 15 chr11 45763541 45763742 -103019730 + MER3 DNA MER1_type 3 205 -4 348 276 103 35 chr11 45763742 45763842 -103019630 + L2 LINE L2 3199 3313 0 190 277 89 59 chr11 45764509 45764568 -103018904 - MIR SINE MIR 0 262 197 2083 133 0 13 chr11 45764568 45764868 -103018604 - AluSx SINE Alu -16 296 1 190 277 89 59 chr11 45764868 45764909 -103018563 - MIR SINE MIR -65 197 159 628 246 85 89 chr11 45764919 45765143 -103018329 - MIR SINE MIR -9 253 31 744 285 23 28 chr11 45765154 45765368 -103018104 - MIR SINE MIR -34 228 16 1874 220 70 11 chr11 45765379 45765820 -103017652 + MLT1C LTR MaLR 1 467 0 2093 136 0 22 chr11 45765858 45766175 -103017297 - AluSq SINE Alu -3 310 1 558 279 69 10 chr11 45766421 45766625 -103016847 + MIR SINE MIR 47 262 0 412 270 11 0 chr11 45767225 45767314 -103016158 + MER5A DNA MER1_type 16 105 -84 2041 152 0 0 chr11 45767552 45767849 -103015623 - AluSx SINE Alu -15 297 1 573 314 33 41 chr11 45768023 45768268 -103015204 - MIR SINE MIR -8 254 12 1261 236 17 14 chr11 45768436 45768732 -103014740 - MLT1C LTR MaLR 0 467 171 283 64 0 106 chr11 45768770 45768817 -103014655 + MLT1C LTR MaLR 101 142 -325 2219 90 75 12 chr11 45768871 45769192 -103014280 + L1PB2 LINE L1 5808 6148 -3 447 242 0 0 chr11 45769649 45769740 -103013732 - Tigger5 DNA MER2_type -3 2320 2230 365 284 0 0 chr11 45769744 45769832 -103013640 + Tigger5 DNA MER2_type 1 88 -2235 287 206 15 15 chr11 45769854 45769922 -103013550 - Tigger5 DNA MER2_type -5 2318 2251 286 236 0 0 chr11 45769891 45769946 -103013526 - Tigger5 DNA MER2_type -2268 55 1 * 9260 57 3 4 chr11 45770378 45771450 -103012022 + MER11C LTR ERVK 1 1071 0 822 148 44 50 chr11 45771779 45771961 -103011511 - MLT1C LTR MaLR -286 181 1 574 127 0 13 chr11 45771966 45772045 -103011427 - AluJ/FLAM SINE Alu -228 84 7 521 277 179 16 chr11 45772073 45772257 -103011215 + MIR SINE MIR 8 221 -41 226 262 189 16 chr11 45772258 45772380 -103011092 + LTR16A1 LTR ERVL 1 143 -314 537 214 172 0 chr11 45772420 45772565 -103010907 + LTR16A1 LTR ERVL 288 457 0 880 113 0 15 chr11 45772596 45772759 -103010713 + FLAM_C SINE Alu 1 161 0 2902 93 5 8 chr11 45772808 45773184 -103010288 - THE1C LTR MaLR 0 375 1 320 0 0 24 chr11 45773622 45773663 -103009809 + (CAT)n Simple_repeat Simple_repeat 3 42 0 254 261 152 11 chr11 45773775 45773867 -103009605 - MIR SINE MIR -119 143 39 411 73 0 0 chr11 45775138 45775193 -103008279 + (TA)n Simple_repeat Simple_repeat 2 56 0 1510 162 88 0 chr11 45775193 45775337 -103008135 - AluJo SINE Alu -9 303 173 525 58 0 0 chr11 45775337 45775406 -103008066 + (TTCC)n Simple_repeat Simple_repeat 3 71 0 1510 162 88 0 chr11 45775406 45775536 -103007936 - AluJo SINE Alu -139 173 1 2257 107 0 22 chr11 45777963 45778281 -103005191 - AluSq SINE Alu -2 311 1 285 222 153 0 chr11 45778331 45778403 -103005069 - MLT1K LTR MaLR -1 587 505 669 295 19 14 chr11 45778710 45778917 -103004555 - MIR SINE MIR -54 208 1 1615 189 7 14 chr11 45779136 45779433 -103004039 - AluJb SINE Alu -15 297 3 490 214 50 14 chr11 45779466 45779613 -103003859 - MIR SINE MIR -62 146 21 1092 86 23 6 chr11 45780296 45780470 -103003002 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 294 179 0 0 chr11 45780474 45780530 -103002942 + CT-rich Low_complexity Low_complexity 3 58 0 1999 142 3 7 chr11 45780552 45780847 -103002625 - AluSx SINE Alu -18 294 1 204 40 0 0 chr11 45784151 45784176 -102999296 + (TG)n Simple_repeat Simple_repeat 2 26 0 2521 60 0 0 chr11 45784234 45784535 -102998937 + AluY SINE Alu 1 301 -10 232 270 48 0 chr11 45784611 45784674 -102998798 - L1ME LINE L1 -369 5801 5736 486 333 6 19 chr11 45784769 45784928 -102998544 - MIR3 SINE MIR -16 192 36 398 342 20 64 chr11 45785038 45785240 -102998232 + MER91A DNA MER1_type 3 195 -1 1739 152 0 37 chr11 45785810 45786106 -102997366 - AluJo SINE Alu -16 296 12 2192 165 11 11 chr11 45786334 45786709 -102996763 - L1MC1 LINE L1 -23 6310 5936 1284 86 5 41 chr11 45786686 45786883 -102996589 - L1PA8A LINE L1 0 6131 5942 * 412 161 43 0 chr11 45786902 45786995 -102996477 - L1MB3 LINE L1 0 6183 6087 4670 139 10 19 chr11 45786998 45787539 -102995933 - L1MA4 LINE L1 -278 6022 5492 1965 145 0 17 chr11 45787539 45787835 -102995637 - AluSx SINE Alu -21 291 1 4670 139 10 19 chr11 45787835 45788210 -102995262 - L1MA4 LINE L1 -808 5492 5115 1886 152 61 0 chr11 45788206 45788535 -102994937 - L1MC1 LINE L1 -353 5980 5632 * 187 239 22 0 chr11 45789138 45789184 -102994288 + L2 LINE L2 3221 3267 -5 9364 47 11 2 chr11 45789280 45791141 -102992331 - L1PA6 LINE L1 -2 6152 4261 374 234 0 6 chr11 45791686 45791857 -102991615 + GA-rich Low_complexity Low_complexity 1 170 0 204 40 0 0 chr11 45792297 45792322 -102991150 + (A)n Simple_repeat Simple_repeat 1 25 0 2111 98 7 17 chr11 45793516 45793811 -102989661 - AluY SINE Alu -5 306 15 555 303 121 66 chr11 45793811 45794343 -102989129 - L2 LINE L2 -6 3266 2715 608 285 118 64 chr11 45794895 45795334 -102988138 - MLT1J LTR MaLR -48 463 1 801 257 11 6 chr11 45795339 45795518 -102987954 + MLT1H LTR MaLR 1 180 -369 273 272 93 25 chr11 45796714 45796876 -102986596 - L1ME4a LINE L1 -72 6049 5877 2173 115 20 0 chr11 45796916 45797220 -102986252 - AluSx SINE Alu -2 310 1 254 251 80 0 chr11 45797780 45797875 -102985597 + MIR SINE MIR 61 166 -63 790 197 0 0 chr11 45798405 45798532 -102984940 - FLAM_A SINE Alu -2 131 5 1137 203 29 0 chr11 45798781 45798988 -102984484 - MER20 DNA MER1_type -6 213 1 956 218 121 97 chr11 45799726 45800056 -102983416 - MLT1H LTR MaLR -12 537 200 451 285 35 38 chr11 45800586 45800828 -102982644 + MLT1H LTR MaLR 83 289 -120 370 301 78 20 chr11 45801979 45802132 -102981340 - MIR3 SINE MIR -33 175 14 1091 301 59 28 chr11 45802903 45803362 -102980110 - MLT1H LTR MaLR -54 495 23 2125 143 0 6 chr11 45803824 45804138 -102979334 - AluSx SINE Alu 0 312 1 1772 166 35 3 chr11 45804167 45804456 -102979016 + AluJo SINE Alu 2 299 -13 851 126 7 7 chr11 45804558 45804701 -102978771 - Charlie5 DNA MER1_type -27 2585 2443 1144 139 29 34 chr11 45805754 45805962 -102977510 - Tigger1 DNA MER2_type -5 2413 2207 2202 130 16 21 chr11 45805962 45806338 -102977134 + L1MA4 LINE L1 5325 5698 -605 865 164 0 0 chr11 45806344 45806478 -102976994 + Tigger1 DNA MER2_type 2280 2413 -5 15146 113 19 10 chr11 45806527 45806562 -102976910 - Tigger1 DNA MER2_type -155 2263 2230 3432 129 48 17 chr11 45806562 45807145 -102976327 + L1MA4 LINE L1 5693 6293 -7 15146 113 19 10 chr11 45807145 45809353 -102974119 - Tigger1 DNA MER2_type -188 2230 1 201 121 0 0 chr11 45809875 45809908 -102973564 + (CAA)n Simple_repeat Simple_repeat 1 33 0 185 348 45 36 chr11 45810134 45810246 -102973226 - MIR3 SINE MIR -81 127 15 2187 100 0 23 chr11 45811841 45812142 -102971330 - AluSc SINE Alu -15 294 1 348 232 29 65 chr11 45812243 45812351 -102971121 + LTR67 LTR ERVL 410 512 -45 292 284 55 28 chr11 45812351 45812460 -102971012 - LTR67 LTR ERVL -3 554 443 189 107 0 0 chr11 45813016 45813044 -102970428 + (ATG)n Simple_repeat Simple_repeat 2 29 0 310 340 87 24 chr11 45813051 45813257 -102970215 - MIR SINE MIR -13 249 31 370 348 42 51 chr11 45814014 45814347 -102969125 + LTR16C LTR ERVL 160 489 -2 262 351 18 26 chr11 45814489 45814603 -102968869 - MIR3 SINE MIR -81 127 15 2166 58 101 0 chr11 45814782 45815060 -102968412 - AluY SINE Alu -2 309 4 991 210 45 0 chr11 45815235 45815435 -102968037 - MIR SINE MIR -51 211 3 544 248 0 0 chr11 45815983 45816096 -102967376 - L1PA13 LINE L1 -6195 592 480 4653 132 16 1 chr11 45816096 45816772 -102966700 + L1PA15 LINE L1 5478 6163 -2 1559 246 38 20 chr11 45816849 45817300 -102966172 + L1MA9 LINE L1 5826 6284 -28 1708 167 0 38 chr11 45817302 45817595 -102965877 - AluJb SINE Alu -30 282 1 21 0 0 0 chr11 45817597 45817618 -102965854 + AT_rich Low_complexity Low_complexity 1 21 0 298 287 33 33 chr11 45817634 45817816 -102965656 - L1MC/D LINE L1 -583 5579 5394 506 318 29 34 chr11 45818232 45818471 -102965001 - MIR SINE MIR -12 250 13 552 302 37 29 chr11 45818750 45818995 -102964477 + MIR SINE MIR 1 247 -15 1765 271 59 14 chr11 45821429 45821938 -102961534 - MLT1H LTR MaLR 0 549 18 389 342 31 35 chr11 45822952 45823180 -102960292 - MIR SINE MIR -16 246 20 1995 126 0 30 chr11 45823620 45823921 -102959551 - AluSc SINE Alu -17 292 1 186 43 0 0 chr11 45824023 45824046 -102959426 + (TTA)n Simple_repeat Simple_repeat 2 24 0 634 316 72 0 chr11 45824371 45824608 -102958864 - L2 LINE L2 -941 2373 2120 2907 104 0 0 chr11 45825284 45825648 -102957824 + THE1B LTR MaLR 1 364 0 3086 182 26 9 chr11 45825789 45826328 -102957144 + MER44D DNA MER2_type 1 603 -2 1029 241 66 30 chr11 45826365 45826697 -102956775 - L2 LINE L2 0 3313 2970 293 82 20 0 chr11 45827025 45827074 -102956398 + (GA)n Simple_repeat Simple_repeat 2 51 0 456 314 0 0 chr11 45827292 45827410 -102956062 + MIR SINE MIR 16 133 -129 261 180 0 0 chr11 45827423 45827473 -102955999 + (CAT)n Simple_repeat Simple_repeat 3 52 0 226 204 0 0 chr11 45828146 45828195 -102955277 - L1ME4a LINE L1 -1 6120 6072 259 318 129 0 chr11 45828200 45828285 -102955187 - MIR SINE MIR -156 106 11 436 299 59 21 chr11 45829409 45829596 -102953876 + MIR SINE MIR 20 213 -49 774 238 70 20 chr11 45829712 45829744 -102953728 + MER46C DNA MER2_type 83 112 -226 2953 83 11 11 chr11 45829744 45830119 -102953353 - THE1C LTR MaLR 0 375 1 774 238 70 20 chr11 45830119 45830330 -102953142 + MER46C DNA MER2_type 112 338 0 396 317 128 41 chr11 45832000 45832243 -102951229 + L2 LINE L2 2653 2916 -398 201 299 75 19 chr11 45832234 45832314 -102951158 + L2 LINE L2 3201 3290 -23 * 2116 98 11 0 chr11 45832314 45832589 -102950883 - AluSx SINE Alu -18 294 17 201 299 75 19 chr11 45832589 45832615 -102950857 + L2 LINE L2 3290 3313 0 25593 142 32 11 chr11 45832676 45838279 -102945193 + L1PA8A LINE L1 14 5802 -644 * 32482 61 1 1 chr11 45838277 45842330 -102941142 + L1P LINE L1 1 4054 -2092 6119 120 10 0 chr11 45842437 45843313 -102940159 + HSMAR2 DNA Mariner 417 1301 -1 300 229 183 23 chr11 45844096 45844227 -102939245 - MIR SINE MIR -7 255 104 687 210 7 21 chr11 45844343 45844486 -102938986 + MLT1J2 LTR MaLR 21 161 -289 2060 124 85 25 chr11 45845632 45845986 -102937486 - THE1C LTR MaLR 0 375 1 183 346 158 23 chr11 45846162 45846295 -102937177 - L2 LINE L2 0 3272 3122 245 313 53 67 chr11 45846430 45846580 -102936892 - L2 LINE L2 -222 3050 2903 27 29 0 0 chr11 45846944 45846978 -102936494 + AT_rich Low_complexity Low_complexity 1 34 0 230 298 172 7 chr11 45847385 45847536 -102935936 - MIR SINE MIR -1 261 86 185 227 0 23 chr11 45847638 45847682 -102935790 + L2 LINE L2 3230 3272 0 299 294 35 0 chr11 45848624 45848709 -102934763 - MIR SINE MIR -123 139 52 353 329 92 19 chr11 45848764 45848974 -102934498 + MIR SINE MIR 37 260 -2 346 236 223 34 chr11 45849095 45849243 -102934229 - MER5B DNA MER1_type -2 176 1 32 0 0 0 chr11 45849740 45849772 -102933700 + AT_rich Low_complexity Low_complexity 1 32 0 610 295 122 53 chr11 45849818 45850451 -102933021 + L2 LINE L2 2570 3264 -49 2513 99 51 43 chr11 45850451 45850823 -102932649 + THE1C LTR MaLR 1 375 0 610 295 122 53 chr11 45850823 45850877 -102932595 + L2 LINE L2 3264 3313 0 568 286 134 23 chr11 45850995 45851257 -102932215 - L2 LINE L2 0 3313 3023 699 281 36 22 chr11 45852598 45852822 -102930650 - MIR SINE MIR -16 246 20 1928 154 123 10 chr11 45852933 45853316 -102930156 + MSTA LTR MaLR 3 428 0 718 259 38 42 chr11 45853686 45853925 -102929547 + MIR SINE MIR 4 241 -21 587 314 172 15 chr11 45853975 45854376 -102929096 - MLT1K LTR MaLR -31 557 94 789 281 35 13 chr11 45855153 45855384 -102928088 - MIR SINE MIR 0 262 27 349 350 101 0 chr11 45855479 45855696 -102927776 + MIR SINE MIR 18 256 -6 1824 172 14 116 chr11 45855701 45856264 -102927208 + L1MA10 LINE L1 5828 6333 -1 2451 146 2 19 chr11 45856497 45856923 -102926549 - L1MD1 LINE L1 0 6242 5824 518 154 114 8 chr11 45856938 45857061 -102926411 - L1MA9 LINE L1 -4 6308 6173 301 118 0 0 chr11 45857072 45857123 -102926349 - L1MD1 LINE L1 -414 5828 5778 196 313 39 78 chr11 45857876 45858004 -102925468 + L2 LINE L2 3179 3301 -12 201 74 0 0 chr11 45858101 45858128 -102925344 + (T)n Simple_repeat Simple_repeat 1 27 0 183 366 49 0 chr11 45858183 45858265 -102925207 + MIR SINE MIR 18 103 -105 201 332 224 20 chr11 45859066 45859262 -102924210 - MIR SINE MIR -7 255 20 1363 221 65 22 chr11 45860550 45860917 -102922555 + MSTD LTR MaLR 3 385 -11 2856 237 10 18 chr11 45860926 45861655 -102921817 + MSTD-int LTR MaLR 2 724 -1011 1275 58 0 0 chr11 45861757 45861912 -102921560 + AluY SINE Alu 148 302 -9 4943 101 25 4 chr11 45862100 45862832 -102920640 + L1PA15 LINE L1 5417 6163 -2 612 294 112 47 chr11 45862844 45862976 -102920496 + L1ME LINE L1 2844 2966 -3180 1661 217 52 49 chr11 45862976 45863442 -102920030 - MLT1C LTR MaLR 0 467 1 612 294 112 47 chr11 45863442 45863775 -102919697 + L1ME LINE L1 2966 3339 -2807 1148 250 51 0 chr11 45863875 45864167 -102919305 + MER58B DNA MER1_type 19 325 -16 546 362 64 25 chr11 45864188 45864624 -102918848 + L1ME LINE L1 3383 3835 -2311 481 330 48 48 chr11 45864706 45865063 -102918409 + L1ME LINE L1 4059 4415 -1731 426 333 89 17 chr11 45865244 45865768 -102917704 + L1ME LINE L1 5255 5810 -311 821 230 5 60 chr11 45866482 45866606 -102916866 - MER5A DNA MER1_type 0 189 79 2065 77 0 4 chr11 45866606 45866867 -102916605 - AluY SINE Alu -11 300 41 821 230 5 60 chr11 45866867 45866942 -102916530 - MER5A DNA MER1_type -110 79 1 186 318 0 0 chr11 45867057 45867101 -102916371 - MIR3 SINE MIR -54 154 111 423 241 83 23 chr11 45867520 45867594 -102915878 - MIR SINE MIR -34 228 160 1550 126 0 13 chr11 45867594 45867833 -102915639 + MER46A DNA MER2_type 1 236 0 423 241 83 23 chr11 45867833 45867891 -102915581 - MIR SINE MIR -102 160 88 305 328 15 30 chr11 45867995 45868193 -102915279 - MLT2F LTR ERVL -28 635 441 740 201 26 3 chr11 45868315 45868506 -102914966 - MLT2E LTR ERVL -441 222 20 41513 44 4 2 chr11 45868584 45874726 -102908746 + L1PA3 LINE L1 1 6152 -3 1477 167 26 32 chr11 45874731 45875078 -102908394 - L1MA9 LINE L1 -30 6282 5938 226 307 109 62 chr11 45875079 45875271 -102908201 - MIR SINE MIR -60 202 2 2214 119 33 30 chr11 45876227 45876589 -102906883 - THE1B LTR MaLR -1 363 1 318 237 42 42 chr11 45876590 45876708 -102906764 - LTR16C LTR ERVL -9 482 365 937 250 5 15 chr11 45877309 45877513 -102905959 + MIR SINE MIR 12 213 -49 201 182 45 0 chr11 45877521 45877565 -102905907 + (CA)n Simple_repeat Simple_repeat 1 46 0 419 301 196 15 chr11 45877782 45877981 -102905491 + MIR SINE MIR 28 262 0 315 254 102 17 chr11 45878329 45878447 -102905025 - MIR SINE MIR -111 151 24 277 263 38 25 chr11 45878539 45878619 -102904853 - MIR SINE MIR -18 244 164 514 310 17 11 chr11 45879232 45879406 -102904066 - MIR SINE MIR -70 192 18 342 226 137 134 chr11 45879422 45879736 -102903736 - MLT1H LTR MaLR -4 545 231 456 173 19 19 chr11 45879769 45879939 -102903533 - AluY SINE Alu 0 376 207 349 234 13 0 chr11 45879942 45880019 -102903453 - MLT1H LTR MaLR -392 157 80 952 249 47 12 chr11 45880751 45881004 -102902468 + MIR SINE MIR 1 262 0 194 340 128 26 chr11 45881041 45881197 -102902275 - MER5A DNA MER1_type 0 189 18 359 322 128 6 chr11 45881452 45881632 -102901840 - MIR SINE MIR 0 262 61 700 297 81 26 chr11 45881717 45882064 -102901408 + MLT1J LTR MaLR 3 368 -143 4851 176 13 32 chr11 45882151 45882578 -102900894 + L1 LINE L1 4189 4623 -1523 2214 133 123 5 chr11 45882578 45882961 -102900511 + MSTA LTR MaLR 1 428 0 9246 142 16 34 chr11 45882963 45884565 -102898907 + MSTA-int LTR MaLR 3 1576 -4 1858 131 164 50 chr11 45884570 45884953 -102898519 + MSTA LTR MaLR 2 428 0 4851 176 13 32 chr11 45884953 45885658 -102897814 + L1 LINE L1 4628 5308 -838 1917 165 55 19 chr11 45885658 45886136 -102897336 + Tigger2 DNA MER2_type 1 2715 -3 458 160 0 11 chr11 45886138 45886232 -102897240 + L1M LINE L1 5307 5399 -901 12378 39 1 5 chr11 45886605 45888878 -102894594 + L1PA4 LINE L1 3877 6148 -7 902 329 96 36 chr11 45888959 45890001 -102893471 + L2 LINE L2 1986 3090 -182 234 62 0 0 chr11 45890063 45890095 -102893377 + (CA)n Simple_repeat Simple_repeat 2 33 0 3403 77 0 26 chr11 45890104 45890511 -102892961 + MLT2A1 LTR ERVL 1 396 -48 399 21 0 0 chr11 45890511 45890559 -102892913 + (TTATA)n Simple_repeat Simple_repeat 5 52 0 3403 77 0 26 chr11 45890559 45890607 -102892865 + MLT2A1 LTR ERVL 396 444 0 327 25 0 0 chr11 45890650 45890690 -102892782 + (TG)n Simple_repeat Simple_repeat 2 41 0 7159 29 1 2 chr11 45892223 45893122 -102890350 - L1PA4 LINE L1 -4 6151 5254 326 291 94 83 chr11 45893415 45893789 -102889683 + MLT1J LTR MaLR 105 482 -29 476 274 107 65 chr11 45893865 45894266 -102889206 + MLT1L LTR MaLR 140 557 -58 973 201 121 0 chr11 45894279 45894478 -102888994 - MER58A DNA MER1_type -1 223 1 1751 189 0 3 chr11 45894614 45894910 -102888562 + AluJb SINE Alu 1 295 -17 26 30 0 0 chr11 45895125 45895158 -102888314 + AT_rich Low_complexity Low_complexity 1 33 0 234 305 21 42 chr11 45896052 45896147 -102887325 - MIR SINE MIR -79 129 37 263 141 70 0 chr11 45896458 45896529 -102886943 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 274 264 33 0 chr11 45896545 45896666 -102886806 + L1ME4a LINE L1 5995 6119 -2 553 287 108 39 chr11 45897644 45898006 -102885466 + L2 LINE L2 2761 3148 -165 759 69 0 0 chr11 45898006 45898108 -102885364 - AluY SINE Alu -9 302 201 279 0 0 0 chr11 45898111 45898142 -102885330 + (TTA)n Simple_repeat Simple_repeat 3 33 0 2674 41 0 0 chr11 45898143 45898462 -102885010 - L1PA3 LINE L1 -19 6136 5818 1731 35 0 0 chr11 45898462 45898660 -102884812 - AluY SINE Alu -113 198 1 204 253 313 20 chr11 45898701 45898800 -102884672 + L2 LINE L2 3184 3311 -2 2345 116 3 0 chr11 45899189 45899500 -102883972 + AluSx SINE Alu 1 312 0 402 240 0 0 chr11 45900193 45900293 -102883179 - MER103 DNA DNA -12 154 55 439 308 68 39 chr11 45900368 45900602 -102882870 + MIR SINE MIR 6 246 -16 1737 145 32 35 chr11 45901906 45902029 -102881443 - L1PA16 LINE L1 -9 6157 6035 2145 122 3 10 chr11 45902029 45902332 -102881140 - AluSx SINE Alu -9 303 3 1737 145 32 35 chr11 45902332 45902552 -102880920 - L1PA16 LINE L1 -131 6035 5815 521 255 7 7 chr11 45902429 45902578 -102880894 - L1MA4 LINE L1 -362 5938 5790 565 307 50 34 chr11 45902648 45902886 -102880586 - MIR SINE MIR -1 261 20 716 315 67 4 chr11 45902958 45903196 -102880276 - MIR SINE MIR -3 259 7 1215 150 52 43 chr11 45903269 45903502 -102879970 - MLT1B LTR MaLR -2 388 154 180 0 0 0 chr11 45905743 45905763 -102877709 + (TTG)n Simple_repeat Simple_repeat 2 21 0 189 0 0 0 chr11 45905788 45905809 -102877663 + (TG)n Simple_repeat Simple_repeat 2 22 0 7194 65 6 0 chr11 45905809 45906772 -102876700 - L1PA8 LINE L1 -23 6149 5182 304 276 13 0 chr11 45906972 45907048 -102876424 - L2 LINE L2 -5 3267 3191 1081 219 56 14 chr11 45907160 45907375 -102876097 + MER58A DNA MER1_type 1 224 0 267 171 53 92 chr11 45907558 45907634 -102875838 + L2 LINE L2 3232 3304 -9 267 54 0 0 chr11 45908209 45908246 -102875226 + (TG)n Simple_repeat Simple_repeat 2 38 0 2742 80 13 40 chr11 45908776 45909150 -102874322 - THE1B LTR MaLR 0 364 1 5355 158 21 11 chr11 45909660 45910567 -102872905 - MER49 LTR ERV1 0 923 8 389 273 180 0 chr11 45910569 45910697 -102872775 - MER5A DNA MER1_type -30 159 9 1066 207 0 11 chr11 45910715 45910903 -102872569 - MER5A DNA MER1_type -2 187 2 488 279 76 0 chr11 45910914 45911072 -102872400 - MER5B DNA MER1_type -2 176 7 288 256 78 22 chr11 45911839 45911929 -102871543 - MIR3 SINE MIR -19 189 95 526 289 159 0 chr11 45912062 45912263 -102871209 - MIR SINE MIR -21 241 9 2457 142 4 85 chr11 45912372 45912845 -102870627 + MER65A LTR ERV1 11 445 0 1459 215 81 9 chr11 45912932 45913253 -102870219 - MER2 DNA MER2_type 0 344 1 282 195 0 0 chr11 45913288 45913329 -102870143 - MER2 DNA MER2_type -304 41 1 240 309 0 12 chr11 45913459 45913540 -102869932 - MER94 DNA DNA -54 80 1 469 349 90 22 chr11 45913711 45914111 -102869361 - MLT1K LTR MaLR -53 562 99 391 265 71 41 chr11 45914338 45914534 -102868938 + MIR SINE MIR 34 235 -27 24 32 0 0 chr11 45915513 45915544 -102867928 + AT_rich Low_complexity Low_complexity 1 31 0 254 269 74 47 chr11 45915544 45915693 -102867779 - L1ME4a LINE L1 -5 6116 5964 514 321 36 0 chr11 45915785 45915981 -102867491 - L1ME4a LINE L1 -297 5824 5622 1885 131 47 20 chr11 45916099 45916396 -102867076 + AluSx SINE Alu 1 305 -7 2187 136 74 15 chr11 45917562 45917901 -102865571 + THE1B LTR MaLR 1 359 -5 206 314 161 24 chr11 45918018 45918142 -102865330 - L2 LINE L2 0 3272 3132 3304 120 119 18 chr11 45918210 45918783 -102864689 + LTR24C LTR ERV1 5 635 0 201 320 88 48 chr11 45919497 45919622 -102863850 + L2 LINE L2 2904 3033 -239 303 296 20 91 chr11 45919658 45919857 -102863615 - L2 LINE L2 0 3313 3129 2271 160 28 23 chr11 45919979 45920367 -102863105 + MLT1B LTR MaLR 1 390 0 270 258 151 19 chr11 45920368 45920527 -102862945 + L2 LINE L2 3127 3306 -7 2031 140 26 5 chr11 45921671 45922023 -102861449 + LTR7 LTR ERV1 48 450 0 406 286 128 15 chr11 45922425 45922558 -102860914 - MIR SINE MIR -112 150 3 509 244 153 34 chr11 45922838 45923014 -102860458 + MIR SINE MIR 35 231 -31 8410 118 19 12 chr11 45923089 45924755 -102858717 - L1P4 LINE L1 -497 5671 3994 412 184 0 0 chr11 45924774 45924850 -102858622 + L1PA16 LINE L1 6090 6165 -1 482 333 20 10 chr11 45925960 45926155 -102857317 + MER117 DNA MER1_type 1 197 0 585 168 72 16 chr11 45926212 45926337 -102857135 - L1MA7 LINE L1 -1 6290 6159 870 172 20 76 chr11 45926720 45926918 -102856554 + MER5A DNA MER1_type 1 187 -2 1957 204 8 102 chr11 45927839 45928358 -102855114 + MER70A LTR ERVL 1 470 -2 229 274 159 18 chr11 45930778 45930891 -102852581 + MLT1I LTR MaLR 16 144 -265 241 145 116 43 chr11 45931082 45931151 -102852321 + MLT1G1 LTR MaLR 505 578 -17 3668 82 9 0 chr11 45931189 45931638 -102851834 + MLT2A2 LTR ERVL 1 453 0 194 344 106 13 chr11 45931646 45931797 -102851675 + MIR SINE MIR 77 241 -21 1791 179 60 31 chr11 45931814 45932165 -102851307 + MLT1A1 LTR MaLR 1 361 -4 375 259 27 136 chr11 45932181 45932475 -102850997 - MIR SINE MIR 0 262 1 201 239 0 22 chr11 45933571 45933617 -102849855 + GA-rich Low_complexity Low_complexity 1 45 0 5121 128 52 14 chr11 45933901 45935216 -102848256 - Tigger1 DNA MER2_type -5 2413 953 2210 110 3 3 chr11 45935216 45935525 -102847947 + AluSx SINE Alu 1 309 -3 5121 128 52 14 chr11 45935525 45935879 -102847593 - Tigger1 DNA MER2_type -1465 953 614 294 222 49 124 chr11 45936643 45936828 -102846644 - L1MC4a LINE L1 -215 5906 5736 315 145 48 0 chr11 45937155 45937217 -102846255 + MIR SINE MIR 193 257 -5 396 335 71 27 chr11 45937227 45937523 -102845949 + L3 LINE CR1 118 426 -1151 1831 301 71 61 chr11 45938149 45938743 -102844729 - MER4A LTR ERV1 0 600 1 225 253 263 11 chr11 45939136 45939231 -102844241 + L2 LINE L2 3143 3261 -11 608 325 108 38 chr11 45939241 45939394 -102844078 + L3 LINE CR1 483 624 -953 4427 101 0 0 chr11 45939394 45939948 -102843524 + MER41A LTR ERV1 1 554 0 608 325 108 38 chr11 45939948 45940376 -102843096 + L3 LINE CR1 624 1105 -472 958 211 17 50 chr11 45940429 45940661 -102842811 - L1MA4 LINE L1 -1 6299 6061 222 118 0 0 chr11 45940661 45940695 -102842777 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1993 124 14 0 chr11 45940695 45940977 -102842495 - AluSx SINE Alu -24 288 3 958 211 17 50 chr11 45940977 45941041 -102842431 - L1MA4 LINE L1 -237 6063 6012 388 324 78 11 chr11 45941165 45941344 -102842128 + L3 LINE CR1 1328 1518 -59 244 281 12 12 chr11 45943021 45943103 -102840369 + LTR58 LTR ERV1 350 431 -248 1627 54 54 54 chr11 45943952 45944192 -102839280 + AluY SINE Alu 69 308 -3 415 232 64 24 chr11 45944304 45944429 -102839043 - MLT1J2 LTR MaLR -277 173 44 182 270 240 0 chr11 45944666 45944766 -102838706 - MIR SINE MIR -73 189 66 333 68 0 0 chr11 45945846 45945890 -102837582 + (TG)n Simple_repeat Simple_repeat 1 44 0 28 48 0 0 chr11 45945890 45945932 -102837540 + AT_rich Low_complexity Low_complexity 1 42 0 2729 104 16 19 chr11 45946388 45946764 -102836708 - THE1C LTR MaLR 0 375 1 370 325 142 30 chr11 45946796 45946965 -102836507 + MIR3 SINE MIR 21 208 0 2897 36 0 0 chr11 45947054 45947387 -102836085 - L1PA4 LINE L1 -1920 4226 3894 * 7575 29 1 0 chr11 45947384 45948271 -102835201 + L1PA4 LINE L1 4229 5116 -1030 2560 26 13 3 chr11 45948265 45948567 -102834905 - L1PA2 LINE L1 -515 5640 5336 * 4730 16 0 0 chr11 45948567 45949072 -102834400 + L1PA2 LINE L1 5647 6153 -2 7783 38 5 0 chr11 45949086 45950138 -102833334 + L1PA4 LINE L1 5098 6153 -2 396 292 115 73 chr11 45951193 45951696 -102831776 + L1M2 LINE L1 529 1050 -5799 349 275 0 0 chr11 45953235 45953315 -102830157 - L2 LINE L2 0 3313 3234 302 226 54 21 chr11 45953470 45953563 -102829909 + MLT1L LTR MaLR 143 238 -377 2274 199 24 13 chr11 45953656 45954123 -102829349 - L1M2 LINE L1 -6230 619 148 360 273 211 12 chr11 45954734 45954895 -102828577 - L2 LINE L2 -21 3292 3100 2218 303 47 22 chr11 45954963 45955810 -102827662 - L2 LINE L2 -369 2945 2078 230 122 24 0 chr11 45955941 45955982 -102827490 + L2 LINE L2 3270 3311 -2 312 276 82 0 chr11 45957579 45957677 -102825795 + MLT1J2 LTR MaLR 343 448 -2 222 136 0 0 chr11 45957919 45957963 -102825509 + (TG)n Simple_repeat Simple_repeat 2 45 0 648 163 0 20 chr11 45958018 45958165 -102825307 + CT-rich Low_complexity Low_complexity 4 147 0 288 330 28 9 chr11 45958687 45958793 -102824679 - MIR SINE MIR -61 147 40 385 248 21 41 chr11 45958913 45959058 -102824414 + MLT1J1 LTR MaLR 295 436 -10 537 309 129 4 chr11 45959229 45959462 -102824010 + MLT1K LTR MaLR 322 583 -5 191 408 27 27 chr11 45960114 45960337 -102823135 + L2 LINE L2 2831 3053 -219 309 294 65 0 chr11 45960519 45960611 -102822861 - MIR SINE MIR -163 99 2 249 296 56 64 chr11 45960662 45960787 -102822685 + L2 LINE L2 3149 3272 0 198 325 72 12 chr11 45961599 45961682 -102821790 - MIR3 SINE MIR -24 184 97 381 284 60 8 chr11 45962183 45962317 -102821155 - MIR SINE MIR -49 213 73 262 266 31 0 chr11 45962490 45962554 -102820918 + MIR SINE MIR 189 254 -8 769 293 9 4 chr11 45963287 45963512 -102819960 + MIR SINE MIR 3 228 -34 462 225 0 0 chr11 45963729 45963818 -102819654 + MER81 DNA DNA 1 89 -25 707 242 75 83 chr11 45963928 45964587 -102818885 - L1MC5 LINE L1 -890 7071 6414 26 30 0 0 chr11 45964948 45964981 -102818491 + AT_rich Low_complexity Low_complexity 1 33 0 2189 103 14 0 chr11 45965293 45965584 -102817888 - AluY SINE Alu -16 295 1 543 287 61 0 chr11 45965949 45966130 -102817342 - HAL1 LINE L1 -994 1513 1322 254 243 53 130 chr11 45966380 45966549 -102816923 - HAL1 LINE L1 -2341 166 11 778 221 5 19 chr11 45967625 45967833 -102815639 - L1PA13 LINE L1 -560 5603 5399 3793 115 2 5 chr11 45967833 45968407 -102815065 + L1PA13 LINE L1 5592 6163 0 691 238 130 13 chr11 45968448 45968679 -102814793 - MIR SINE MIR 0 262 5 305 368 23 15 chr11 45969058 45969191 -102814281 + MIR3 SINE MIR 75 208 0 191 330 57 47 chr11 45969639 45969745 -102813727 - MIR SINE MIR -109 153 47 2626 91 8 0 chr11 45969954 45970306 -102813166 + THE1A LTR MaLR 1 355 0 8708 111 5 3 chr11 45970306 45971599 -102811873 + THE1A-int LTR MaLR 1 1295 -285 1602 94 9 0 chr11 45971599 45971832 -102811640 + THE1A LTR MaLR 121 355 0 1154 228 48 91 chr11 45972169 45972362 -102811110 + L2 LINE L2 2175 2375 -939 510 239 9 0 chr11 45972362 45972475 -102810997 + MER81 DNA DNA 1 114 0 450 0 0 0 chr11 45972475 45972525 -102810947 + (CA)n Simple_repeat Simple_repeat 2 51 0 1154 228 48 91 chr11 45972525 45972724 -102810748 + L2 LINE L2 2373 2551 -763 314 296 115 45 chr11 45972722 45972965 -102810507 + L2 LINE L2 3050 3309 -4 * 180 262 0 0 chr11 45974479 45974521 -102808951 - L2 LINE L2 -14 3299 3258 1170 273 128 38 chr11 45975249 45975863 -102807609 + L2 LINE L2 2618 3297 -16 211 200 0 44 chr11 45975830 45975875 -102807597 + MIR SINE MIR 220 262 0 * 642 288 106 25 chr11 45976103 45976339 -102807133 - MIR SINE MIR 0 262 8 579 213 12 41 chr11 45976339 45976508 -102806964 - MER106B DNA MER1_type 0 1059 896 254 315 154 15 chr11 45976634 45976764 -102806708 + L2 LINE L2 3118 3265 -7 699 269 50 50 chr11 45977325 45977682 -102805790 + LTR33 LTR ERVL 1 357 -164 2296 226 5 51 chr11 45977684 45978268 -102805204 + MER74A LTR ERVL 1 557 -1 256 236 19 28 chr11 45978282 45978388 -102805084 + LTR33 LTR ERVL 413 517 -4 256 231 46 0 chr11 45978514 45978579 -102804893 + L2 LINE L2 3232 3299 -14 279 360 154 0 chr11 45978660 45978796 -102804676 - MIR3 SINE MIR -11 197 41 710 307 19 5 chr11 45978868 45979080 -102804392 - MIR SINE MIR -32 230 16 1813 126 29 26 chr11 45980330 45980680 -102802792 + L1MC2 LINE L1 5985 6335 -9 386 220 55 9 chr11 45980836 45980945 -102802527 - MIR SINE MIR 0 262 149 221 218 18 18 chr11 45980982 45981037 -102802435 - L2 LINE L2 -37 3276 3222 194 395 58 0 chr11 45981035 45981121 -102802351 - MIR SINE MIR -157 105 15 * 434 294 0 49 chr11 45981124 45981267 -102802205 + MIR SINE MIR 67 202 -60 1364 227 131 52 chr11 45981512 45981692 -102801780 + MLT1E LTR MaLR 3 167 -426 2304 101 3 0 chr11 45981692 45981989 -102801483 - AluY SINE Alu -13 298 1 1364 227 131 52 chr11 45981989 45982351 -102801121 + MLT1E LTR MaLR 167 593 0 287 321 160 0 chr11 45982724 45982830 -102800642 - L2 LINE L2 0 3313 3191 25 0 0 0 chr11 45983069 45983094 -102800378 + AT_rich Low_complexity Low_complexity 1 25 0 429 269 67 0 chr11 45983100 45983219 -102800253 - L2 LINE L2 0 3313 3187 529 300 92 38 chr11 45983270 45983373 -102800099 - LTR33 LTR ERVL 0 521 425 1316 144 43 0 chr11 45983373 45983581 -102799891 + MER20 DNA MER1_type 3 219 0 529 300 92 38 chr11 45983581 45983944 -102799528 - LTR33 LTR ERVL -96 425 3 1456 154 163 30 chr11 45984029 45984360 -102799112 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr11 45984780 45984801 -102798671 + AT_rich Low_complexity Low_complexity 1 21 0 2733 133 17 5 chr11 45985310 45985730 -102797742 + MER61B LTR ERV1 1 425 0 312 315 9 18 chr11 45986262 45986373 -102797099 - MIR SINE MIR -113 149 40 186 196 22 22 chr11 45987013 45987059 -102796413 - L2 LINE L2 0 3272 3227 * 970 228 33 37 chr11 45987025 45987266 -102796206 - MIR SINE MIR -5 257 18 1639 147 49 7 chr11 45988658 45988943 -102794529 - AluSx SINE Alu -15 297 1 226 274 53 32 chr11 45988947 45989042 -102794430 + MIR SINE MIR 110 206 -56 302 277 21 21 chr11 45990182 45990276 -102793196 - MIR SINE MIR -98 164 71 12673 148 14 10 chr11 45990392 45993699 -102789773 - L1MA3 LINE L1 -166 6139 2816 594 211 54 0 chr11 45993849 45993996 -102789476 - L1MA10 LINE L1 0 6334 6180 302 306 126 16 chr11 45994034 45994217 -102789255 - L1MCb LINE L1 -3739 2825 2623 796 301 49 0 chr11 45996717 45996943 -102786529 + MIR SINE MIR 5 241 -21 889 97 30 0 chr11 45996971 45997136 -102786336 + GA-rich Low_complexity Low_complexity 2 171 0 2216 124 0 3 chr11 45997788 45998087 -102785385 + AluSg SINE Alu 1 298 -12 183 42 0 0 chr11 45998087 45998111 -102785361 + (TA)n Simple_repeat Simple_repeat 2 25 0 246 303 330 16 chr11 45998564 45998752 -102784720 + MIR SINE MIR 13 259 -3 401 350 34 21 chr11 45998866 45999103 -102784369 + L2 LINE L2 2619 2858 -456 416 272 18 0 chr11 45999174 45999288 -102784184 - HAL1 LINE L1 -726 1781 1666 340 265 154 0 chr11 45999306 45999442 -102784030 - HAL1 LINE L1 -895 1612 1456 379 211 55 31 chr11 45999499 45999627 -102783845 + L2 LINE L2 1290 1420 -1894 3996 215 50 18 chr11 45999682 46001062 -102782410 - L1MCb LINE L1 -4850 1195 4 1825 269 77 49 chr11 46001084 46001824 -102781648 + L2 LINE L2 1474 2234 -1080 794 231 175 14 chr11 46001824 46002110 -102781362 + MLT1J2 LTR MaLR 1 332 -118 198 275 77 11 chr11 46002372 46002463 -102781009 - L2 LINE L2 -405 2908 2812 3677 148 80 5 chr11 46002820 46003481 -102779991 + MER50 LTR ERV1 1 711 -23 1010 239 163 24 chr11 46004277 46004659 -102778813 + MLT1J2 LTR MaLR 1 434 -16 238 289 78 22 chr11 46005182 46005272 -102778200 - MIR3 SINE MIR -19 189 95 526 289 159 0 chr11 46005405 46005606 -102777866 - MIR SINE MIR -21 241 9 396 283 197 7 chr11 46006737 46006889 -102776583 + MER5A DNA MER1_type 9 189 0 526 259 30 0 chr11 46007063 46007198 -102776274 - MIR SINE MIR -17 245 107 376 267 10 0 chr11 46007352 46007453 -102776019 + MIR SINE MIR 150 251 -11 228 215 0 62 chr11 46007453 46007518 -102775954 + CT-rich Low_complexity Low_complexity 1 61 0 821 215 84 19 chr11 46007925 46008139 -102775333 + MIR SINE MIR 16 243 -19 256 317 106 7 chr11 46008160 46008302 -102775170 + MIR SINE MIR 101 256 -6 864 239 118 17 chr11 46008611 46008908 -102774564 + L2 LINE L2 2230 2556 -758 923 124 0 32 chr11 46009197 46009383 -102774089 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1206 42 30 0 chr11 46009527 46009650 -102773822 + (TTTC)n Simple_repeat Simple_repeat 1 298 0 1206 42 30 0 chr11 46009650 46009817 -102773655 + (TTTC)n Simple_repeat Simple_repeat 2 173 0 1263 307 68 4 chr11 46010022 46010470 -102773002 + L2 LINE L2 2538 3016 -297 220 150 0 0 chr11 46010504 46010544 -102772928 + L2 LINE L2 3274 3313 0 1294 255 146 98 chr11 46010558 46011021 -102772451 - HAL1 LINE L1 -1045 1462 1023 1638 47 0 11 chr11 46011021 46011211 -102772261 + L1PA3 LINE L1 5967 6154 -1 1294 255 146 98 chr11 46011211 46011763 -102771709 - HAL1 LINE L1 -1484 1023 367 1548 193 7 33 chr11 46011763 46012069 -102771403 - AluJo SINE Alu -7 305 8 1294 255 146 98 chr11 46012069 46012372 -102771100 - HAL1 LINE L1 -2140 367 80 17625 65 1 1 chr11 46012373 46014578 -102768894 + L1P LINE L1 1 2205 -3941 3548 226 54 72 chr11 46015149 46015265 -102768207 - L1MEc LINE L1 -5198 1198 1081 2295 96 7 0 chr11 46015265 46015568 -102767904 - AluY SINE Alu -6 305 1 3548 226 54 72 chr11 46015568 46016207 -102767265 - L1MEc LINE L1 -5315 1081 469 2076 118 23 10 chr11 46016207 46016512 -102766960 - AluSc SINE Alu 0 309 1 3548 226 54 72 chr11 46016512 46016939 -102766533 - L1MEc LINE L1 -5927 469 36 613 243 8 68 chr11 46016942 46017177 -102766295 + MER20B DNA MER1_type 561 781 -2 609 213 16 0 chr11 46017189 46017311 -102766161 + MER94 DNA DNA 1 124 -10 216 158 0 0 chr11 46017684 46017722 -102765750 + T-rich Low_complexity Low_complexity 1 38 0 984 249 32 12 chr11 46017815 46018068 -102765404 - MIR SINE MIR 0 262 5 1126 59 0 40 chr11 46018147 46018299 -102765173 + L1PA4 LINE L1 6007 6152 -3 413 294 79 75 chr11 46018504 46018973 -102764499 - L2 LINE L2 -837 2477 2007 1863 191 87 30 chr11 46019046 46019481 -102763991 - MLT1C LTR MaLR 0 467 8 831 186 20 138 chr11 46020845 46020926 -102762546 + MER20 DNA MER1_type 1 90 -129 1667 143 11 4 chr11 46020926 46021192 -102762280 - L1MB3 LINE L1 -7 6176 5909 831 186 20 138 chr11 46021192 46021309 -102762163 + MER20 DNA MER1_type 90 167 -52 2195 29 8 0 chr11 46021309 46021554 -102761918 + L1PA4 LINE L1 5909 6155 0 831 186 20 138 chr11 46021554 46021601 -102761871 + MER20 DNA MER1_type 167 218 -1 559 253 55 32 chr11 46021638 46021934 -102761538 - MLT1I LTR MaLR -15 394 61 1942 152 0 25 chr11 46022052 46022368 -102761104 - AluJb SINE Alu -4 308 1 307 244 133 0 chr11 46022771 46022861 -102760611 - MER5B DNA MER1_type -2 176 75 457 332 69 10 chr11 46023213 46023415 -102760057 - MIR SINE MIR 0 262 49 297 201 138 94 chr11 46024312 46024471 -102759001 - HAL1 LINE L1 -2295 212 47 1797 128 38 21 chr11 46024853 46025143 -102758329 - AluSx SINE Alu -17 295 1 239 253 91 50 chr11 46025519 46025567 -102757905 - MIR3 SINE MIR -8 200 155 370 315 66 0 chr11 46025567 46025748 -102757724 + MER117 DNA MER1_type 4 196 -1 239 253 91 50 chr11 46025748 46025798 -102757674 - MIR3 SINE MIR -53 155 98 722 143 4 2 chr11 46025939 46026198 -102757274 + AluSx SINE Alu 1 311 -1 517 250 15 0 chr11 46026205 46026337 -102757135 - L2 LINE L2 0 3313 3180 1163 259 110 23 chr11 46026546 46026936 -102756536 + L2 LINE L2 2885 3308 -5 1410 170 9 0 chr11 46027415 46027644 -102755828 + AluJb SINE Alu 68 298 -14 270 282 0 14 chr11 46027647 46027718 -102755754 - MIR3 SINE MIR -27 181 112 555 241 4 86 chr11 46028271 46028503 -102754969 - MER102a DNA MER1_type -3 327 115 257 105 0 0 chr11 46028864 46028902 -102754570 - Alu SINE Alu -24 278 241 1301 187 123 56 chr11 46029790 46030132 -102753340 - MLT1A1 LTR MaLR 0 365 1 393 243 121 59 chr11 46030185 46030407 -102753065 + MIR SINE MIR 20 262 0 475 231 43 0 chr11 46030685 46030802 -102752670 - L1MD3 LINE L1 -5 7990 7869 324 262 154 86 chr11 46030843 46031064 -102752408 - L1ME4a LINE L1 -226 5895 5660 1857 167 7 10 chr11 46031064 46031364 -102752108 - AluJo SINE Alu -11 301 3 6056 88 5 2 chr11 46031387 46032209 -102751263 - L1PA10 LINE L1 -4 6164 5341 2010 179 25 8 chr11 46032270 46032666 -102750806 + HSMAR2 DNA Mariner 1 403 -899 1793 165 0 11 chr11 46033712 46033997 -102749475 + AluJo SINE Alu 1 282 -30 229 333 29 10 chr11 46035524 46035626 -102747846 + L2 LINE L2 2948 3051 -221 650 293 22 31 chr11 46036276 46036498 -102746974 - MIR SINE MIR -32 230 11 430 264 95 66 chr11 46037213 46037455 -102746017 - MIR SINE MIR -10 252 4 1059 239 225 24 chr11 46038654 46039072 -102744400 + MLT1D LTR MaLR 1 502 -3 509 289 8 0 chr11 46039435 46039556 -102743916 + MIR SINE MIR 13 134 -128 202 288 0 9 chr11 46039674 46039741 -102743731 - MIR SINE MIR -69 139 74 6034 125 24 5 chr11 46039982 46041610 -102741862 - L1PA15 LINE L1 0 6165 4506 6299 241 78 33 chr11 46041737 46043394 -102740078 + MSTD-int LTR MaLR 2 1733 -2 1801 167 51 94 chr11 46043396 46043810 -102739662 + MSTD LTR MaLR 1 396 0 599 171 9 0 chr11 46044084 46044189 -102739283 + MSTD-int LTR MaLR 1628 1733 -2 1637 169 58 101 chr11 46044191 46044605 -102738867 + MSTD LTR MaLR 1 396 0 256 326 31 31 chr11 46044691 46044789 -102738683 - MIR3 SINE MIR -105 103 6 338 336 10 0 chr11 46045573 46045677 -102737795 + L2 LINE L2 2194 2298 -1016 885 233 155 28 chr11 46045938 46046255 -102737217 + L1MC/D LINE L1 5282 5638 -2170 210 195 110 0 chr11 46046493 46046575 -102736897 + L2 LINE L2 3112 3202 -111 415 336 22 0 chr11 46047026 46047252 -102736220 - L1MC4a LINE L1 -1906 5902 5672 750 282 48 31 chr11 46047258 46047609 -102735863 - L1MC4a LINE L1 -2196 5612 5256 2231 91 0 10 chr11 46047945 46048241 -102735231 - AluY SINE Alu -18 293 1 370 333 0 14 chr11 46048547 46048688 -102734784 + MIR SINE MIR 124 262 0 250 143 0 0 chr11 46048694 46048736 -102734736 - L1MA6 LINE L1 -6 6294 6253 1323 236 137 22 chr11 46048799 46049215 -102734257 + MLT1K LTR MaLR 95 558 -30 2296 84 0 10 chr11 46049282 46049579 -102733893 - AluY SINE Alu -17 294 1 710 235 8 0 chr11 46049591 46049723 -102733749 - FLAM_A SINE Alu 0 133 1 420 20 0 0 chr11 46050138 46050187 -102733285 + (CA)n Simple_repeat Simple_repeat 1 49 0 206 159 0 23 chr11 46050527 46050571 -102732901 + (TG)n Simple_repeat Simple_repeat 1 43 0 276 377 49 16 chr11 46050678 46050800 -102732672 + L2 LINE L2 3101 3226 -46 16114 27 3 1 chr11 46051293 46053859 -102729613 - L1PA3 LINE L1 -5 6150 3581 398 196 80 72 chr11 46054217 46054355 -102729117 - MLT1H LTR MaLR 0 549 411 1212 110 25 2 chr11 46054656 46054847 -102728625 - pTR5 LTR ERV1 -2044 394 66 352 189 33 22 chr11 46054847 46054937 -102728535 - LTR30 LTR ERV1 -80 642 552 5682 115 47 67 chr11 46054938 46056123 -102727349 - pTR5 LTR ERV1 -406 2032 741 230 245 0 0 chr11 46056874 46056923 -102726549 + MIR SINE MIR 182 230 -32 192 25 0 75 chr11 46057119 46057159 -102726313 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 373 344 26 7 chr11 46057682 46057833 -102725639 + MIR SINE MIR 33 186 -76 * 546 345 42 32 chr11 46057823 46058145 -102725327 + L2 LINE L2 2707 3035 -278 468 221 19 0 chr11 46058152 46058306 -102725166 + (CAT)n Simple_repeat Simple_repeat 3 159 0 770 257 34 10 chr11 46058316 46058522 -102724950 - MIR SINE MIR -7 255 45 309 292 73 52 chr11 46058649 46058841 -102724631 + L2 LINE L2 3118 3313 0 42887 38 25 2 chr11 46059440 46065483 -102717989 - L1PA3 LINE L1 0 6155 1 1383 78 6 0 chr11 46065550 46065729 -102717743 - L1PA8 LINE L1 0 6172 5993 333 311 33 50 chr11 46066177 46066357 -102717115 - L1ME3A LINE L1 -220 5950 5774 783 273 164 45 chr11 46066602 46067093 -102716379 - L2 LINE L2 0 3313 2730 782 249 53 0 chr11 46068354 46068523 -102714949 - MER45A DNA AcHobo 0 178 1 365 338 107 27 chr11 46068581 46068806 -102714666 + MIR SINE MIR 19 261 -1 1996 134 0 0 chr11 46069422 46069697 -102713775 + AluSx SINE Alu 3 277 -35 888 95 29 15 chr11 46070266 46070403 -102713069 - L1MA8 LINE L1 -12 6279 6141 236 314 19 29 chr11 46070409 46070514 -102712958 - MLT1J LTR MaLR -180 331 228 1383 136 19 0 chr11 46072708 46072914 -102710558 - AluSc SINE Alu -12 297 88 2161 179 92 3 chr11 46072983 46073374 -102710098 + MSTB LTR MaLR 1 426 0 2166 122 3 13 chr11 46074334 46074646 -102708826 + AluSg1 SINE Alu 1 309 0 1171 153 0 0 chr11 46074646 46074816 -102708656 + AluSg/x SINE Alu 134 303 -9 301 295 0 0 chr11 46074823 46074901 -102708571 - MER45 DNA AcHobo -74 1507 1430 * 3137 235 21 37 chr11 46074888 46075154 -102708318 - MER45B DNA AcHobo -240 800 531 1292 203 54 103 chr11 46075154 46075563 -102707909 - MLT1B LTR MaLR 0 390 2 3137 235 21 37 chr11 46075563 46076058 -102707414 - MER45B DNA AcHobo -509 531 51 323 340 78 44 chr11 46076130 46076401 -102707071 - MLT1J LTR MaLR -8 503 224 22 0 0 0 chr11 46076445 46076467 -102707005 + AT_rich Low_complexity Low_complexity 1 22 0 361 211 0 13 chr11 46076577 46076653 -102706819 - MLT1L LTR MaLR -537 78 4 * 784 293 110 55 chr11 46076653 46077174 -102706298 - MLT1G1 LTR MaLR -23 572 23 512 229 51 17 chr11 46077694 46077869 -102705603 + Charlie7 DNA MER1_type 2429 2609 -3 2487 76 0 3 chr11 46077999 46078302 -102705170 + AluY SINE Alu 1 302 -9 688 313 31 20 chr11 46078437 46078604 -102704868 - L2 LINE L2 -38 3275 3102 2137 128 3 3 chr11 46078604 46078916 -102704556 + AluSx SINE Alu 1 312 0 688 313 31 20 chr11 46078916 46079042 -102704430 - L2 LINE L2 -211 3102 2979 2145 115 7 0 chr11 46079110 46079405 -102704067 - AluSq SINE Alu -16 297 1 2383 149 65 34 chr11 46079828 46080243 -102703229 + MSTA LTR MaLR 1 428 0 611 267 54 32 chr11 46080299 46080520 -102702952 - LTR16B LTR ERVL -2 462 237 186 43 0 0 chr11 46080963 46080986 -102702486 + (TG)n Simple_repeat Simple_repeat 2 24 0 386 247 32 0 chr11 46082021 46082114 -102701358 - MIR3 SINE MIR -9 199 104 219 263 95 21 chr11 46082101 46082196 -102701276 + MIR3 SINE MIR 5 106 -102 * 7071 177 20 17 chr11 46082940 46084930 -102698542 + L1PA14 LINE L1 4079 6088 -73 2314 133 27 29 chr11 46084930 46085306 -102698166 + THE1C LTR MaLR 1 375 0 7071 177 20 17 chr11 46085306 46085379 -102698093 + L1PA14 LINE L1 6088 6159 -2 1547 162 28 4 chr11 46085738 46085991 -102697481 - AluSg SINE Alu -2 308 50 198 380 13 0 chr11 46086836 46086915 -102696557 - L2 LINE L2 -5 3267 3188 2772 73 41 0 chr11 46087192 46087533 -102695939 + THE1A LTR MaLR 1 355 0 246 346 49 43 chr11 46087549 46087711 -102695761 - L2 LINE L2 -208 3064 2902 7439 106 7 5 chr11 46088363 46089444 -102694028 - L1P LINE L1 -3188 2958 1875 * 11918 88 2 2 chr11 46089442 46091051 -102692421 + L1PA7 LINE L1 2996 4605 -1541 6785 72 0 0 chr11 46091051 46091867 -102691605 + L1PA7 LINE L1 5333 6149 -5 303 221 18 55 chr11 46092202 46092250 -102691222 + (TATAA)n Simple_repeat Simple_repeat 5 53 -108 2970 139 14 2 chr11 46092250 46092673 -102690799 + MSTA LTR MaLR 1 428 0 303 221 18 55 chr11 46092673 46092787 -102690685 + (TATAA)n Simple_repeat Simple_repeat 53 161 0 249 341 36 22 chr11 46093006 46093144 -102690328 + MIR SINE MIR 13 152 -110 1065 264 10 16 chr11 46093358 46093661 -102689811 + AluY SINE Alu 1 301 0 236 294 0 0 chr11 46093760 46093852 -102689620 + L1MEc LINE L1 1162 1253 -5143 411 250 57 28 chr11 46093862 46094038 -102689434 - MER20B DNA MER1_type -156 627 447 235 313 48 0 chr11 46094062 46094145 -102689327 - MER20B DNA MER1_type -45 174 88 320 202 9 101 chr11 46094248 46094357 -102689115 + MER58C DNA MER1_type 44 142 -73 244 250 12 25 chr11 46094357 46094437 -102689035 + GA-rich Low_complexity Low_complexity 2 80 0 1474 148 86 41 chr11 46094542 46094833 -102688639 - AluJo SINE Alu -4 308 5 1977 261 69 34 chr11 46094866 46095507 -102687965 - MLT2F LTR ERVL 0 663 1 186 267 44 0 chr11 46095985 46096030 -102687442 - L2 LINE L2 -12 3260 3214 336 237 108 0 chr11 46096634 46096727 -102686745 - L2 LINE L2 0 3313 3211 1860 60 0 0 chr11 46097017 46097235 -102686237 - L1PA7 LINE L1 -2 6152 5935 873 166 7 0 chr11 46097240 46097391 -102686081 + L1MB2 LINE L1 6010 6161 -10 2062 192 115 0 chr11 46097573 46098120 -102685352 - SATR1 Satellite Satellite -4 609 1 2193 168 102 53 chr11 46098149 46099215 -102684257 - SATR1 Satellite Satellite 0 1117 1 2328 177 120 22 chr11 46099240 46100117 -102683355 - SATR1 Satellite Satellite 0 963 1 2473 138 119 0 chr11 46100145 46100565 -102682907 - SATR1 Satellite Satellite 0 470 1 2262 155 119 2 chr11 46100594 46101007 -102682465 - SATR1 Satellite Satellite 0 470 10 427 231 7 36 chr11 46101024 46101331 -102682141 + (TTA)n Simple_repeat Simple_repeat 1 297 0 2292 167 83 18 chr11 46101331 46102427 -102681045 + SATR1 Satellite Satellite 1 1167 -92 2510 155 107 0 chr11 46102452 46103024 -102680448 + SATR1 Satellite Satellite 1 632 -4 2446 178 119 17 chr11 46103058 46109130 -102674342 - SATR1 Satellite Satellite 0 6692 1 1498 215 83 0 chr11 46109141 46109480 -102673992 - SATR1 Satellite Satellite -87 383 17 238 179 21 42 chr11 46109488 46109583 -102673889 + (TAA)n Simple_repeat Simple_repeat 2 94 0 353 229 11 44 chr11 46109660 46109843 -102673629 + (TTA)n Simple_repeat Simple_repeat 2 178 0 2214 165 109 3 chr11 46109861 46111887 -102671585 + SATR1 Satellite Satellite 1 2239 -93 7048 60 26 0 chr11 46111927 46112798 -102670674 - MER11D LTR ERVK -3 894 1 16181 42 1 1 chr11 46112798 46114838 -102668634 - HERVK11D LTR ERVK 0 7752 5711 * 17962 36 1 1 chr11 46114832 46117079 -102666393 - HERVK11D LTR ERVK -2432 5320 3073 6825 45 1 0 chr11 46117079 46117940 -102665532 - HERVK11D LTR ERVK -6890 862 1 6919 69 28 0 chr11 46117940 46118813 -102664659 - MER11D LTR ERVK 0 897 1 2020 191 102 5 chr11 46118813 46119987 -102663485 - SATR1 Satellite Satellite -2 1287 1 1639 183 166 10 chr11 46120019 46120483 -102662989 - SATR1 Satellite Satellite -1 536 1 259 202 5 78 chr11 46120484 46120677 -102662795 + (TTA)n Simple_repeat Simple_repeat 1 179 0 30 0 0 0 chr11 46120696 46120726 -102662746 + AT_rich Low_complexity Low_complexity 1 30 0 236 229 14 42 chr11 46120730 46120874 -102662598 + (TTA)n Simple_repeat Simple_repeat 3 142 0 2176 175 96 2 chr11 46120876 46122702 -102660770 + SATR1 Satellite Satellite 1 1998 -419 312 222 148 0 chr11 46123081 46123162 -102660310 + MIR SINE MIR 49 141 -121 682 254 23 12 chr11 46123352 46123525 -102659947 - MER5B DNA MER1_type -3 175 1 4393 122 17 30 chr11 46123603 46123984 -102659488 + L1MA5 LINE L1 5541 5908 -392 1741 146 134 27 chr11 46123984 46124313 -102659159 + THE1B LTR MaLR 1 364 0 4393 122 17 30 chr11 46124313 46124701 -102658771 + L1MA5 LINE L1 5908 6300 0 282 274 96 37 chr11 46124763 46124898 -102658574 - MIR SINE MIR -8 254 112 309 317 127 7 chr11 46124983 46125125 -102658347 + MIR3 SINE MIR 19 177 -31 236 230 88 90 chr11 46125126 46125239 -102658233 + MIR SINE MIR 42 149 -59 598 366 30 9 chr11 46126220 46126452 -102657020 + MIR SINE MIR 7 243 -19 339 350 68 17 chr11 46126463 46126640 -102656832 + MIR SINE MIR 53 238 -24 273 312 156 9 chr11 46126720 46126829 -102656643 + L2 LINE L2 3143 3267 -5 1457 220 110 17 chr11 46126944 46127362 -102656110 + MLT2B1 LTR ERVL 1 457 -63 300 27 0 0 chr11 46127364 46127401 -102656071 + (TG)n Simple_repeat Simple_repeat 2 38 0 656 328 45 35 chr11 46127623 46127937 -102655535 - L3 LINE CR1 -1 1576 1260 3325 74 9 14 chr11 46129290 46129736 -102653736 - MLT2A1 LTR ERVL 0 444 1 28 29 0 0 chr11 46130304 46130339 -102653133 + AT_rich Low_complexity Low_complexity 1 35 0 190 304 75 60 chr11 46130386 46130587 -102652885 + L2 LINE L2 2805 3008 -264 538 268 60 6 chr11 46131000 46131168 -102652304 + MIR SINE MIR 65 241 -21 221 266 55 64 chr11 46131369 46131446 -102652026 + L2 LINE L2 3202 3279 -34 2289 182 51 27 chr11 46131446 46131935 -102651537 + MLT1D LTR MaLR 5 505 0 221 266 55 64 chr11 46131935 46131966 -102651506 + L2 LINE L2 3279 3309 -4 1647 191 24 3 chr11 46131994 46132288 -102651184 + AluJo SINE Alu 1 300 -12 396 258 8 16 chr11 46132430 46132554 -102650918 - LTR67 LTR ERVL 0 557 435 1668 208 96 28 chr11 46133606 46134043 -102649429 + MLT1C LTR MaLR 1 467 0 1881 132 48 58 chr11 46134205 46134584 -102648888 - THE1C LTR MaLR 0 375 1 913 121 20 13 chr11 46134634 46134783 -102648689 + L1PA16 LINE L1 6008 6157 -9 202 235 20 0 chr11 46135436 46135487 -102647985 - L2 LINE L2 0 3313 3262 925 239 109 62 chr11 46135628 46135828 -102647644 + L1ME LINE L1 4564 4753 -1393 2341 107 0 0 chr11 46135828 46136127 -102647345 + AluSg SINE Alu 1 299 -11 925 239 109 62 chr11 46136127 46136587 -102646885 + L1ME LINE L1 4753 5255 -891 3314 100 11 2 chr11 46136827 46137276 -102646196 - MLT2A2 LTR ERVL 0 453 1 509 249 104 66 chr11 46138294 46138679 -102644793 - MLT1G LTR MaLR -38 557 107 308 248 57 47 chr11 46138683 46138901 -102644571 + L1ME LINE L1 5653 5885 -285 29 28 0 0 chr11 46139081 46139117 -102644355 + AT_rich Low_complexity Low_complexity 1 36 0 1178 229 66 77 chr11 46139293 46139760 -102643712 - LTR40b LTR ERVL 0 462 1 1595 166 26 9 chr11 46140742 46141105 -102642367 - L1PA16 LINE L1 0 6154 5771 3698 121 14 0 chr11 46141148 46141704 -102641768 - L1PA15 LINE L1 -5 6160 5597 419 311 30 8 chr11 46141706 46141838 -102641634 + MIR SINE MIR 20 154 -108 319 256 102 80 chr11 46142190 46142327 -102641145 + MIR3 SINE MIR 12 151 -57 440 308 100 81 chr11 46142510 46142870 -102640602 + MLT1L LTR MaLR 120 486 -129 1809 152 0 14 chr11 46142976 46143273 -102640199 - AluSx SINE Alu -19 293 1 653 299 94 5 chr11 46143283 46143507 -102639965 - MIR SINE MIR -14 248 5 7286 44 1 0 chr11 46143543 46144864 -102638608 + L1PA6 LINE L1 4865 6187 0 522 323 58 21 chr11 46145967 46146295 -102637177 + MLT1L LTR MaLR 40 379 -236 250 277 0 15 chr11 46146507 46146572 -102636900 - MIR SINE MIR -184 78 15 404 311 95 5 chr11 46147221 46147411 -102636061 - MIR SINE MIR -6 256 50 409 227 106 8 chr11 46149050 46149182 -102634290 + MER103 DNA DNA 2 146 -20 318 222 0 16 chr11 46150684 46150747 -102632725 + L2 LINE L2 3209 3270 -2 4590 91 5 11 chr11 46150773 46151420 -102632052 - L1PA8A LINE L1 -13 6118 5476 * 10122 45 0 0 chr11 46151415 46153437 -102630035 - L1PA4 LINE L1 0 6155 4135 259 91 45 0 chr11 46153591 46153635 -102629837 - Alu SINE Alu -256 46 1 530 223 58 0 chr11 46153669 46153790 -102629682 - FLAM_A SINE Alu -5 128 1 2126 144 0 6 chr11 46154060 46154373 -102629099 - AluSx SINE Alu -1 311 1 300 153 83 7 chr11 46154373 46154517 -102628955 + (TA)n Simple_repeat Simple_repeat 2 156 0 187 118 49 49 chr11 46154517 46154619 -102628853 + (TTATA)n Simple_repeat Simple_repeat 5 106 0 182 37 37 0 chr11 46154962 46154989 -102628483 + (TA)n Simple_repeat Simple_repeat 2 29 0 1974 150 0 0 chr11 46155153 46155440 -102628032 + AluJb SINE Alu 1 287 -25 262 176 24 0 chr11 46155458 46155543 -102627929 + (TA)n Simple_repeat Simple_repeat 2 88 0 728 188 18 3 chr11 46155589 46155871 -102627601 - MLT1A1 LTR MaLR 0 365 1 2589 52 0 7 chr11 46156695 46157000 -102626472 - AluY SINE Alu -8 303 1 460 227 162 58 chr11 46157307 46157461 -102626011 - MER5A DNA MER1_type -1 188 19 553 216 224 0 chr11 46157479 46157736 -102625736 + MER33 DNA MER1_type 1 363 0 2024 153 37 3 chr11 46160602 46160956 -102622516 - MER47A DNA MER2_type 0 366 1 2232 98 20 0 chr11 46161238 46161409 -102622063 - AluSp SINE Alu -11 302 121 405 0 0 0 chr11 46161409 46161454 -102622018 + (TG)n Simple_repeat Simple_repeat 2 46 0 2232 98 20 0 chr11 46161454 46161578 -102621894 - AluSp SINE Alu -192 121 1 611 214 113 13 chr11 46161871 46162030 -102621442 - AluJb SINE Alu -15 297 123 209 293 0 17 chr11 46162889 46162947 -102620525 - MIR3 SINE MIR -6 202 146 2211 136 0 3 chr11 46163306 46163615 -102619857 - AluSx SINE Alu -4 308 1 2289 87 16 13 chr11 46164050 46164360 -102619112 - AluSp SINE Alu -2 311 1 907 201 19 0 chr11 46164366 46164525 -102618947 - AluJo/FRAM SINE Alu -16 296 135 1911 173 3 0 chr11 46164526 46164826 -102618646 - AluJo SINE Alu -11 301 1 471 264 58 58 chr11 46164905 46165079 -102618393 - MER5A DNA MER1_type -1 188 15 1133 67 0 0 chr11 46165245 46165379 -102618093 - AluSc SINE Alu -17 292 159 300 27 0 0 chr11 46166140 46166177 -102617295 + (TG)n Simple_repeat Simple_repeat 2 38 0 312 228 269 29 chr11 46166177 46166348 -102617124 + L2 LINE L2 1760 1971 -1343 2040 278 95 54 chr11 46166493 46167467 -102616005 + L2 LINE L2 2014 3036 -277 2261 107 7 0 chr11 46168044 46168343 -102615129 - AluSx SINE Alu -11 301 1 288 0 0 0 chr11 46169223 46169255 -102614217 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 1049 190 63 86 chr11 46169266 46169534 -102613938 - AluJo SINE Alu -44 268 7 3297 176 129 10 chr11 46169617 46170305 -102613167 - MER21B LTR ERV1 -93 770 1 906 186 12 18 chr11 46170355 46170522 -102612950 + FRAM SINE Alu 1 166 0 1091 142 12 0 chr11 46170738 46170900 -102612572 - AluSq SINE Alu -19 294 131 2012 110 44 0 chr11 46170903 46171218 -102612254 - AluSq SINE Alu 0 327 1 388 321 58 42 chr11 46171379 46171619 -102611853 + L1ME4a LINE L1 5878 6121 0 2469 74 0 0 chr11 46171752 46172050 -102611422 - AluY SINE Alu -13 298 1 444 357 16 0 chr11 46172222 46172351 -102611121 - MIR3 SINE MIR -3 205 75 2411 131 48 10 chr11 46172597 46173350 -102610122 + L1P4 LINE L1 4887 5663 -503 28 61 0 0 chr11 46173884 46173933 -102609539 + AT_rich Low_complexity Low_complexity 1 49 0 624 142 217 0 chr11 46174475 46174595 -102608877 - MER46A DNA MER2_type -90 146 1 200 31 62 0 chr11 46175250 46175282 -102608190 + T-rich Low_complexity Low_complexity 2 35 0 2091 128 3 0 chr11 46175285 46175573 -102607899 - AluSx SINE Alu -23 289 1 356 301 59 21 chr11 46175845 46176084 -102607388 - L1ME LINE L1 -377 5744 5497 207 0 0 0 chr11 46176829 46176852 -102606620 + (TG)n Simple_repeat Simple_repeat 2 24 0 408 275 121 13 chr11 46177448 46177597 -102605875 - MIR3 SINE MIR -6 202 38 2070 113 3 0 chr11 46177617 46177925 -102605547 - AluSq SINE Alu 0 309 1 979 274 60 7 chr11 46179151 46179450 -102604022 - L2 LINE L2 -814 2500 2186 287 267 22 0 chr11 46179513 46179603 -102603869 + HAL1 LINE L1 1560 1651 -856 582 165 43 0 chr11 46179991 46180106 -102603366 + Charlie4 DNA MER1_type 1826 1945 -16 906 176 35 130 chr11 46180114 46180260 -102603212 + L1MC5 LINE L1 7330 7488 -473 1966 156 10 0 chr11 46180260 46180567 -102602905 - AluJb SINE Alu -2 310 1 906 176 35 130 chr11 46180567 46180713 -102602759 + L1MC5 LINE L1 7488 7565 -396 2091 92 0 58 chr11 46180713 46181040 -102602432 - AluSx SINE Alu -4 308 1 906 176 35 130 chr11 46181040 46181207 -102602265 + L1MC5 LINE L1 7565 7746 -215 1639 152 87 7 chr11 46181256 46181532 -102601940 + AluJo SINE Alu 1 298 -14 340 259 0 65 chr11 46181547 46181651 -102601821 + L1ME2 LINE L1 2245 2339 -3807 354 261 87 72 chr11 46181651 46181744 -102601728 - MER46C DNA MER2_type 0 338 248 1673 170 6 26 chr11 46181744 46182056 -102601416 + AluJb SINE Alu 1 306 -6 354 261 87 72 chr11 46182056 46182295 -102601177 - MER46C DNA MER2_type -90 248 1 340 259 0 65 chr11 46182295 46182329 -102601143 + L1ME2 LINE L1 2339 2374 -3772 21 0 0 0 chr11 46182583 46182604 -102600868 + AT_rich Low_complexity Low_complexity 1 21 0 41097 31 24 1 chr11 46182657 46188673 -102594799 - L1PA2 LINE L1 0 6155 1 363 274 22 74 chr11 46188821 46188956 -102594516 + L2 LINE L2 3162 3289 -24 548 291 173 25 chr11 46188971 46189294 -102594178 - L2 LINE L2 -44 3269 2899 2255 95 10 3 chr11 46189950 46190245 -102593227 + AluSc SINE Alu 1 297 -12 586 260 159 29 chr11 46190292 46190659 -102592813 + MLT1H1 LTR MaLR 59 448 -107 1429 248 75 10 chr11 46191383 46191782 -102591690 + MER70B LTR ERVL 6 430 -148 235 225 93 78 chr11 46192077 46192136 -102591336 + MLT1E1 LTR MaLR 1 58 -596 354 108 108 0 chr11 46192136 46192210 -102591262 + L1MA9 LINE L1 6230 6311 -1 235 225 93 78 chr11 46192210 46192279 -102591193 + MLT1E1 LTR MaLR 58 131 -523 * 1725 163 29 70 chr11 46192276 46192719 -102590753 + MSTB1 LTR MaLR 8 432 0 1242 207 122 70 chr11 46192719 46193216 -102590256 + MLT1E1 LTR MaLR 132 654 0 307 250 111 17 chr11 46193402 46193563 -102589909 + MIR SINE MIR 32 254 -8 2222 92 0 3 chr11 46193743 46194035 -102589437 - AluSg1 SINE Alu -18 291 1 225 284 125 46 chr11 46194508 46194836 -102588636 + L1ME2 LINE L1 2678 3031 -3115 725 218 0 0 chr11 46194841 46194974 -102588498 + FLAM_A SINE Alu 5 137 -5 385 296 92 54 chr11 46194975 46195367 -102588105 + L1ME2 LINE L1 3078 3484 -2662 1364 139 243 4 chr11 46195489 46195769 -102587703 - MER7A DNA MER2_type -1 345 1 374 282 94 0 chr11 46195789 46195959 -102587513 + L1ME2 LINE L1 5068 5253 -893 210 91 0 0 chr11 46196011 46196044 -102587428 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1284 209 37 18 chr11 46196047 46196320 -102587152 - AluJo SINE Alu -29 283 6 446 215 0 0 chr11 46196587 46196666 -102586806 - MLT1I LTR MaLR -238 171 93 672 252 75 53 chr11 46196753 46197019 -102586453 - MLT1I LTR MaLR -39 370 99 311 302 123 36 chr11 46197127 46197591 -102585881 + L1ME2 LINE L1 5434 5948 -216 22 35 0 0 chr11 46197660 46197689 -102585783 + AT_rich Low_complexity Low_complexity 1 29 0 1802 152 14 20 chr11 46197798 46197933 -102585539 + AluJo SINE Alu 1 135 -177 1911 154 7 7 chr11 46197933 46198231 -102585241 + AluJb SINE Alu 1 298 -14 1802 152 14 20 chr11 46198231 46198392 -102585080 + AluJo SINE Alu 135 295 -17 25 0 0 0 chr11 46199214 46199239 -102584233 + AT_rich Low_complexity Low_complexity 1 25 0 1677 149 7 65 chr11 46199265 46199573 -102583899 + AluJo SINE Alu 1 290 -22 2485 73 0 6 chr11 46199573 46199886 -102583586 + AluY SINE Alu 1 311 0 318 250 173 73 chr11 46199886 46200196 -102583276 + L1ME LINE L1 5287 5625 -539 1872 174 3 3 chr11 46200357 46200656 -102582816 + AluJb SINE Alu 1 299 -13 299 318 201 0 chr11 46202048 46202227 -102581245 - L2 LINE L2 -171 3142 2928 229 132 0 0 chr11 46202249 46202287 -102581185 - MLT1A2 LTR MaLR 0 390 353 2776 223 73 19 chr11 46202304 46203056 -102580416 - MER21B LTR ERV1 -54 809 17 817 174 135 111 chr11 46203063 46203397 -102580075 - MLT1A2 LTR MaLR -32 342 1 1673 291 183 6 chr11 46203417 46204200 -102579272 - L2 LINE L2 -424 2890 1970 2539 53 0 0 chr11 46204340 46204640 -102578832 - AluY SINE Alu -11 300 1 233 246 16 0 chr11 46205240 46205301 -102578171 - L1ME LINE L1 -513 5608 5547 468 35 0 0 chr11 46207142 46207200 -102576272 + (TG)n Simple_repeat Simple_repeat 2 59 0 1287 163 26 91 chr11 46208624 46208931 -102574541 + AluJo SINE Alu 2 288 -24 501 245 161 32 chr11 46209570 46209725 -102573747 - MER5A DNA MER1_type -6 183 9 285 326 0 12 chr11 46210418 46210504 -102572968 - MIR3 SINE MIR -6 202 118 1932 141 7 3 chr11 46210937 46211272 -102572200 + AluJb SINE Alu 1 336 0 222 225 0 0 chr11 46211663 46211703 -102571769 + (CATA)n Simple_repeat Simple_repeat 3 42 0 1091 164 20 0 chr11 46211820 46212015 -102571457 + MER46A DNA MER2_type 38 236 0 224 339 153 25 chr11 46213488 46213606 -102569866 - L2 LINE L2 -4 3268 3136 326 176 185 56 chr11 46213717 46213825 -102569647 - L2 LINE L2 -20 3293 3172 222 369 0 36 chr11 46213895 46213979 -102569493 + L2 LINE L2 3168 3248 -24 23 0 0 0 chr11 46213979 46214002 -102569470 + AT_rich Low_complexity Low_complexity 1 23 0 437 271 182 82 chr11 46214183 46214600 -102568872 - MLT1L LTR MaLR -13 602 144 186 127 99 0 chr11 46215567 46215638 -102567834 + (TTATA)n Simple_repeat Simple_repeat 5 82 0 2354 81 0 0 chr11 46217043 46217338 -102566134 + AluSg SINE Alu 1 295 -15 21 36 0 0 chr11 46217340 46217368 -102566104 + AT_rich Low_complexity Low_complexity 1 28 0 2001 134 3 7 chr11 46218024 46218329 -102565143 + AluSx SINE Alu 2 305 -7 237 33 0 0 chr11 46219597 46219627 -102563845 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 180 111 0 0 chr11 46219779 46219806 -102563666 + (CATA)n Simple_repeat Simple_repeat 1 27 0 298 258 0 0 chr11 46220413 46220475 -102562997 + MIR SINE MIR 100 161 -101 547 108 48 0 chr11 46220845 46220928 -102562544 - AluJo/FRAM SINE Alu -19 293 207 828 192 7 0 chr11 46220928 46221074 -102562398 - AluJo SINE Alu -70 242 96 198 310 17 0 chr11 46221304 46221362 -102562110 + MIR SINE MIR 183 241 -21 1977 138 7 0 chr11 46221908 46222191 -102561281 - AluSx SINE Alu -27 285 1 231 0 77 0 chr11 46222201 46222240 -102561232 + T-rich Low_complexity Low_complexity 2 43 0 2213 96 4 0 chr11 46222243 46222524 -102560948 - AluSx SINE Alu -30 282 1 1318 198 67 18 chr11 46223645 46223928 -102559544 - AluJo SINE Alu -15 297 1 2284 117 0 0 chr11 46224251 46224559 -102558913 - AluSg SINE Alu -2 308 1 1859 161 43 0 chr11 46224677 46224976 -102558496 + AluJb SINE Alu 1 312 0 581 202 119 67 chr11 46227269 46227462 -102556010 - MER106B DNA MER1_type -5 1054 29 1152 128 84 75 chr11 46227941 46228168 -102555304 - MER46A DNA MER2_type -7 229 1 1804 171 0 0 chr11 46228236 46228523 -102554949 - AluJb SINE Alu -15 297 11 650 150 24 47 chr11 46228686 46228813 -102554659 + FLAM_C SINE Alu 4 127 -6 1933 141 0 3 chr11 46228881 46229194 -102554278 - AluSx SINE Alu 0 312 1 8201 111 35 11 chr11 46229282 46230551 -102552921 + HSMAR2 DNA Mariner 3 1302 0 244 302 12 35 chr11 46231282 46231368 -102552104 + L2 LINE L2 3188 3271 -1 472 258 80 12 chr11 46231738 46231901 -102551571 + MIR3 SINE MIR 32 205 -3 448 302 44 13 chr11 46232540 46232699 -102550773 + MIR SINE MIR 3 166 -96 1491 192 27 20 chr11 46233275 46233567 -102549905 + AluJo SINE Alu 1 294 -18 22 0 0 0 chr11 46233576 46233598 -102549874 + AT_rich Low_complexity Low_complexity 1 22 0 655 223 69 45 chr11 46233633 46233835 -102549637 + MIR SINE MIR 56 262 0 339 158 263 0 chr11 46235400 46235476 -102547996 - Tigger2 DNA MER2_type -11 2707 2612 588 91 0 45 chr11 46235476 46235564 -102547908 + HY4 scRNA scRNA 1 84 -9 1433 97 209 29 chr11 46235589 46235939 -102547533 - Tigger2 DNA MER2_type -90 2628 1 2739 196 48 94 chr11 46236405 46237153 -102546319 - MER21B LTR ERV1 -52 811 98 305 200 33 100 chr11 46237255 46237345 -102546127 - MER21B LTR ERV1 -758 105 22 747 167 53 0 chr11 46237361 46237509 -102545963 + MER2 DNA MER2_type 8 163 -182 488 205 28 107 chr11 46237509 46237724 -102545748 - LTR24B LTR ERV1 0 635 414 363 190 25 13 chr11 46238041 46238120 -102545352 - LTR24B LTR ERV1 -488 88 9 394 237 0 0 chr11 46238210 46238286 -102545186 + MER2 DNA MER2_type 270 345 0 2347 87 0 3 chr11 46240942 46241254 -102542218 + AluY SINE Alu 1 311 0 1691 159 7 17 chr11 46241261 46241557 -102541915 + AluJo SINE Alu 4 296 -16 189 0 0 0 chr11 46242867 46242888 -102540584 + (A)n Simple_repeat Simple_repeat 1 21 0 6042 154 41 17 chr11 46244144 46245435 -102538037 + L1MA5A LINE L1 4124 5441 -746 2218 144 87 2 chr11 46245596 46246033 -102537439 + L1MA5A LINE L1 5814 6287 -10 1367 199 62 0 chr11 46246063 46246335 -102537137 + AluJo SINE Alu 1 289 -23 212 246 14 0 chr11 46247343 46247412 -102536060 + (TA)n Simple_repeat Simple_repeat 2 71 0 247 226 202 24 chr11 46248772 46248856 -102534616 - L2 LINE L2 -16 3256 3158 2580 59 0 0 chr11 46248859 46249164 -102534308 - AluY SINE Alu -6 305 1 311 116 0 198 chr11 46249475 46249508 -102533964 + L2 LINE L2 2173 2180 -1134 2377 90 0 3 chr11 46249508 46249819 -102533653 - AluSq SINE Alu -3 310 1 311 116 0 198 chr11 46249819 46249871 -102533601 + L2 LINE L2 2180 2241 -1073 461 296 253 24 chr11 46249877 46250174 -102533298 + L2 LINE L2 2593 2957 -357 265 301 44 62 chr11 46250829 46250942 -102532530 - L2 LINE L2 -8 3264 3154 318 202 0 45 chr11 46252291 46252380 -102531092 + HsTC2 DNA Tc2 3 87 -1811 218 284 95 0 chr11 46252650 46252724 -102530748 - L2 LINE L2 -11 3302 3222 1937 152 0 3 chr11 46252958 46253255 -102530217 - AluJb SINE Alu -16 296 1 247 263 100 0 chr11 46253428 46253508 -102529964 - L1ME LINE L1 -367 5797 5710 310 290 30 19 chr11 46253524 46253658 -102529814 - L1ME LINE L1 -465 5656 5524 693 231 115 45 chr11 46253698 46253941 -102529531 - MIR SINE MIR 0 262 3 1971 152 0 34 chr11 46254042 46254365 -102529107 - AluSx SINE Alu 0 312 1 826 222 30 0 chr11 46254656 46254854 -102528618 - L1ME LINE L1 -1082 5064 4861 2377 293 62 10 chr11 46254854 46255845 -102527627 + L2 LINE L2 2266 3312 -1 29 28 0 0 chr11 46256215 46256251 -102527221 + AT_rich Low_complexity Low_complexity 1 36 0 1422 172 116 15 chr11 46256422 46256690 -102526782 + AluJo SINE Alu 9 303 -9 2355 235 90 43 chr11 46256701 46256780 -102526692 + L1ME3 LINE L1 4415 4489 -1673 1279 192 8 0 chr11 46256780 46257014 -102526458 + MER46A DNA MER2_type 1 236 0 2355 235 90 43 chr11 46257014 46257195 -102526277 + L1ME3 LINE L1 4489 4660 -1502 423 0 0 0 chr11 46257195 46257242 -102526230 + (CA)n Simple_repeat Simple_repeat 2 48 0 2355 235 90 43 chr11 46257242 46258581 -102524891 + L1ME3 LINE L1 4660 6093 -69 953 163 65 11 chr11 46259024 46259208 -102524264 - MER105 DNA DNA -9 195 2 180 250 62 47 chr11 46259343 46259407 -102524065 - L3 LINE CR1 -178 1399 1335 29 0 0 0 chr11 46260196 46260225 -102523247 + AT_rich Low_complexity Low_complexity 1 29 0 2167 95 0 54 chr11 46261767 46262082 -102521390 + AluSx SINE Alu 1 298 -14 982 189 6 0 chr11 46263904 46264068 -102519404 - FAM SINE Alu -10 165 1 232 350 29 39 chr11 46264375 46264478 -102518994 - MIR3 SINE MIR -104 104 3 182 37 37 0 chr11 46265184 46265211 -102518261 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 539 260 319 32 chr11 46265223 46265648 -102517824 - L2 LINE L2 -32 3281 2758 3169 127 21 8 chr11 46265658 46266131 -102517341 + MER1A DNA MER1_type 51 529 0 3637 275 123 19 chr11 46266134 46267464 -102516008 - L2 LINE L2 -568 2746 1278 204 292 46 69 chr11 46267464 46267594 -102515878 - L2 LINE L2 -863 2451 2325 21 0 0 0 chr11 46267808 46267829 -102515643 + AT_rich Low_complexity Low_complexity 1 21 0 2091 120 0 19 chr11 46268293 46268609 -102514863 - AluSx SINE Alu -2 310 1 2124 111 14 3 chr11 46268702 46268991 -102514481 + AluSx SINE Alu 1 292 -20 638 242 6 25 chr11 46269387 46269548 -102513924 + FRAM SINE Alu 1 156 -20 21 0 0 0 chr11 46272512 46272533 -102510939 + AT_rich Low_complexity Low_complexity 1 21 0 320 321 15 30 chr11 46273407 46273541 -102509931 - MIR SINE MIR -82 180 49 1926 155 7 0 chr11 46274361 46274658 -102508814 + AluJb SINE Alu 1 299 -13 399 41 0 0 chr11 46274916 46274965 -102508507 + (CA)n Simple_repeat Simple_repeat 2 50 0 5499 47 20 3 chr11 46275000 46275698 -102507774 - L1PA7 LINE L1 0 6154 5445 320 222 167 0 chr11 46275851 46275941 -102507531 - MIR SINE MIR -25 237 133 569 152 0 10 chr11 46275960 46276059 -102507413 + FLAM_A SINE Alu 39 136 -6 256 235 0 0 chr11 46276059 46276110 -102507362 - MIR SINE MIR -118 144 94 2299 86 0 16 chr11 46277184 46277515 -102505957 - AluSc SINE Alu 0 309 1 576 0 0 0 chr11 46278385 46278449 -102505023 + (CA)n Simple_repeat Simple_repeat 2 65 0 461 284 149 0 chr11 46278661 46278809 -102504663 + MIR SINE MIR 47 216 -46 495 0 0 0 chr11 46279294 46279349 -102504123 + (TAGA)n Simple_repeat Simple_repeat 3 57 0 258 312 0 13 chr11 46279389 46279466 -102504006 - 7SK RNA RNA -1 192 117 329 220 30 40 chr11 46279510 46279610 -102503862 - 7SK RNA RNA -85 108 10 437 342 169 25 chr11 46280945 46281626 -102501846 + L2 LINE L2 1876 2654 -660 351 309 59 20 chr11 46281759 46281911 -102501561 + MIR SINE MIR 95 252 -10 1782 128 62 4 chr11 46282388 46282661 -102500811 - AluSx SINE Alu -23 289 1 287 305 43 75 chr11 46283201 46283388 -102500084 - L3 LINE CR1 -251 1326 1146 339 321 57 21 chr11 46283472 46283612 -102499860 - L3 LINE CR1 -373 1204 1060 2268 90 0 10 chr11 46283676 46283987 -102499485 - AluSx SINE Alu -4 308 1 1887 136 7 23 chr11 46285204 46285506 -102497966 + AluSx SINE Alu 1 297 -15 2063 156 0 28 chr11 46286140 46286492 -102496980 - MER7A DNA MER2_type -5 341 2 314 250 123 17 chr11 46288842 46288936 -102494536 + L1ME4a LINE L1 5257 5340 -877 348 24 0 0 chr11 46288936 46288977 -102494495 + (CA)n Simple_repeat Simple_repeat 2 42 0 314 250 123 17 chr11 46288977 46289099 -102494373 + L1ME4a LINE L1 5340 5497 -720 444 271 136 5 chr11 46289118 46289332 -102494140 + L1ME4a LINE L1 5571 5812 -309 581 196 89 18 chr11 46289407 46289575 -102493897 + MER104 DNA MER2_type 1 180 0 623 217 25 19 chr11 46289589 46289746 -102493726 + L1ME4a LINE L1 5960 6117 -4 1104 327 96 36 chr11 46289800 46290268 -102493204 + L3 LINE CR1 10 505 -1072 699 313 48 56 chr11 46290271 46290735 -102492737 + L2 LINE L2 2751 3267 -5 536 269 110 0 chr11 46291110 46291255 -102492217 + MIR SINE MIR 6 166 -96 731 253 0 17 chr11 46291256 46291430 -102492042 + FRAM SINE Alu 1 171 -5 188 257 14 43 chr11 46291478 46291548 -102491924 + MIR SINE MIR 188 255 -7 1010 174 53 8 chr11 46291636 46291842 -102491630 + MER20 DNA MER1_type 7 219 0 872 327 107 46 chr11 46292731 46293629 -102489843 + L2 LINE L2 2048 3061 -252 209 301 146 39 chr11 46293735 46293838 -102489634 + L2 LINE L2 3193 3306 -7 282 211 187 56 chr11 46294831 46295082 -102488390 + L1ME4a LINE L1 5725 6008 -113 21 0 0 0 chr11 46295993 46296014 -102487458 + AT_rich Low_complexity Low_complexity 1 21 0 2131 92 7 11 chr11 46296435 46296718 -102486754 + AluSx SINE Alu 1 282 -30 323 44 22 0 chr11 46296718 46296763 -102486709 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 1838 145 50 0 chr11 46296872 46297155 -102486317 + AluJo SINE Alu 1 297 -15 409 304 55 27 chr11 46297625 46297845 -102485627 + HAL1b LINE L1 415 640 -708 1698 144 23 7 chr11 46297956 46298277 -102485195 - MER47B DNA MER2_type -2 416 27 680 290 191 33 chr11 46298736 46299299 -102484173 + L1M4 LINE L1 2173 2646 -3500 218 31 0 31 chr11 46299299 46299331 -102484141 + (TAA)n Simple_repeat Simple_repeat 2 32 0 680 290 191 33 chr11 46299331 46299847 -102483625 + L1M4 LINE L1 2646 3419 -2727 228 318 118 22 chr11 46299961 46300316 -102483156 + L1M4 LINE L1 3514 3902 -2244 306 0 0 0 chr11 46300397 46300431 -102483041 + (CA)n Simple_repeat Simple_repeat 2 35 0 356 299 221 0 chr11 46300468 46300685 -102482787 + L1M4 LINE L1 4051 4315 -1831 635 281 85 49 chr11 46301643 46302219 -102481253 + L1MEc LINE L1 810 1406 -4990 480 229 117 127 chr11 46302261 46302803 -102480669 - MLT1H LTR MaLR 0 549 4 1817 123 34 87 chr11 46302920 46303278 -102480194 + MER44D DNA MER2_type 1 609 0 2038 156 37 0 chr11 46303891 46304244 -102479228 + MER47A DNA MER2_type 1 366 0 1034 278 92 28 chr11 46304784 46305219 -102478253 - MLT1H LTR MaLR -4 545 83 2448 25 7 0 chr11 46305320 46305606 -102477866 + AluYb8 SINE Alu 1 288 -30 678 298 63 0 chr11 46305620 46305872 -102477600 + L1MEc LINE L1 1525 1792 -4604 320 280 122 35 chr11 46305951 46306262 -102477210 + L1MEc LINE L1 1918 2255 -4141 677 259 70 57 chr11 46306313 46306417 -102477055 + L1MEc LINE L1 2384 2485 -3730 1652 203 100 44 chr11 46306417 46306895 -102476577 + MLT1D LTR MaLR 1 505 0 677 259 70 57 chr11 46306895 46307134 -102476338 + L1MEc LINE L1 2485 2737 -3478 2228 102 3 3 chr11 46307134 46307429 -102476043 - AluSg SINE Alu -15 295 1 677 259 70 57 chr11 46307429 46307539 -102475933 + L1MEc LINE L1 2737 2844 -3371 202 127 0 111 chr11 46307591 46307654 -102475818 + (TAAAAA)n Simple_repeat Simple_repeat 3 58 0 760 304 107 49 chr11 46307741 46308213 -102475259 + L1M4 LINE L1 4457 4999 -1147 2214 104 0 13 chr11 46308213 46308511 -102474961 + AluSx SINE Alu 5 298 -14 760 304 107 49 chr11 46308511 46308861 -102474611 + L1M4 LINE L1 4999 5327 -819 347 254 72 39 chr11 46309471 46309823 -102473649 + L1ME LINE L1 696 1034 -5171 2562 195 29 6 chr11 46309824 46310568 -102472904 + L1MB2 LINE L1 4812 5570 -601 3527 154 42 2 chr11 46311296 46311885 -102471587 + L1MB2 LINE L1 5551 6163 -8 643 260 102 53 chr11 46311997 46312485 -102470987 + L1ME LINE L1 1136 1647 -4749 * 2843 226 91 26 chr11 46312476 46312868 -102470604 + L1ME2 LINE L1 4746 5111 -1053 1453 178 40 0 chr11 46312868 46313115 -102470357 + AluJo SINE Alu 1 257 -55 2843 226 91 26 chr11 46313115 46314052 -102469420 + L1ME2 LINE L1 5111 6164 0 410 296 45 11 chr11 46314043 46314222 -102469250 + L1ME LINE L1 1623 1807 -4589 * 829 226 11 28 chr11 46314900 46315081 -102468391 - MER5A DNA MER1_type -11 178 1 1964 237 82 63 chr11 46315959 46316290 -102467182 + L1ME LINE L1 2028 2351 -3864 1444 167 78 29 chr11 46316290 46316571 -102466901 + AluJo SINE Alu 1 295 -17 1964 237 82 63 chr11 46316571 46317110 -102466362 + L1ME LINE L1 2351 2906 -3309 2268 113 0 0 chr11 46317110 46317411 -102466061 + AluSx SINE Alu 3 303 -9 1964 237 82 63 chr11 46317411 46317687 -102465785 + L1ME LINE L1 2906 3175 -3040 1134 254 51 57 chr11 46317667 46317808 -102465664 + L1P3 LINE L1 5409 5549 -623 * 2119 132 3 28 chr11 46317808 46318127 -102465345 + AluSx SINE Alu 1 311 -1 1134 254 51 57 chr11 46318127 46318372 -102465100 + L1P3 LINE L1 5549 5796 -376 254 271 93 53 chr11 46318397 46318548 -102464924 + L1MC5 LINE L1 5784 5940 -1868 2794 104 35 146 chr11 46318857 46319345 -102464127 - Tigger2 DNA MER2_type 0 2718 1 404 174 0 87 chr11 46319401 46319499 -102463973 - Tigger4(Zombi) DNA MER2_type 0 2731 248 705 48 0 0 chr11 46319499 46319583 -102463889 + THE1-int LTR MaLR 358 441 -1139 1434 171 43 16 chr11 46319583 46319840 -102463632 - AluJb SINE Alu -48 264 1 933 157 87 0 chr11 46319843 46320015 -102463457 - MER46A DNA MER2_type -49 187 1 511 243 59 136 chr11 46320056 46320577 -102462895 + L1MC5 LINE L1 6415 6938 -870 541 108 0 0 chr11 46320643 46320717 -102462755 - THE1A LTR MaLR 0 355 282 7076 83 0 0 chr11 46320717 46321611 -102461861 - THE1A-int LTR MaLR -686 894 1 2902 75 20 0 chr11 46321611 46321959 -102461513 - THE1A LTR MaLR 0 355 1 1955 226 86 50 chr11 46321989 46322843 -102460629 + L1MC5 LINE L1 7025 7908 -53 1498 156 10 80 chr11 46322843 46323144 -102460328 - AluJo SINE Alu -32 280 1 2311 97 0 3 chr11 46323174 46323473 -102459999 + AluSg SINE Alu 1 298 -12 226 287 41 16 chr11 46323719 46323841 -102459631 + L1ME3A LINE L1 1333 1457 -4939 495 264 174 16 chr11 46323850 46324108 -102459364 - LTR50 LTR ERVL -4 791 493 680 200 186 9 chr11 46324163 46324378 -102459094 - LTR50 LTR ERVL -542 253 1 255 61 0 0 chr11 46324388 46324421 -102459051 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 320 289 10 10 chr11 46324422 46324519 -102458953 - L2 LINE L2 -14 3299 3203 385 297 22 31 chr11 46325223 46325445 -102458027 + L1ME3A LINE L1 2341 2560 -3655 3796 229 54 51 chr11 46325534 46326045 -102457427 - L1M4 LINE L1 -2417 3729 3221 1964 121 26 0 chr11 46326045 46326318 -102457154 - AluSx SINE Alu -32 280 1 3796 229 54 51 chr11 46326318 46327078 -102456394 - L1M4 LINE L1 -2925 3221 2454 2051 270 103 51 chr11 46327070 46328075 -102455397 + L1ME3A LINE L1 3206 4329 -1886 * 2213 126 0 0 chr11 46328075 46328376 -102455096 + AluSx SINE Alu 1 301 -11 2051 270 103 51 chr11 46328376 46328984 -102454488 + L1ME3A LINE L1 4329 4904 -1311 2383 77 143 15 chr11 46328989 46329433 -102454039 + MER1A DNA MER1_type 1 529 0 630 291 112 46 chr11 46329542 46330174 -102453298 + L1ME3A LINE L1 5034 5721 -514 486 194 120 43 chr11 46330188 46330366 -102453106 + L1ME3A LINE L1 5796 5956 -283 977 197 33 11 chr11 46330369 46330552 -102452920 + Tigger7 DNA MER2_type 4 190 -2297 512 216 10 0 chr11 46330585 46330682 -102452790 + Tigger7 DNA MER2_type 2389 2486 -1 206 207 11 35 chr11 46330919 46330974 -102452498 + (TTTA)n Simple_repeat Simple_repeat 4 58 -30 1887 141 3 43 chr11 46330974 46331278 -102452194 + AluJo SINE Alu 6 297 -15 206 207 11 35 chr11 46331278 46331309 -102452163 + (TTTA)n Simple_repeat Simple_repeat 58 88 0 1990 138 0 0 chr11 46331351 46331661 -102451811 - AluSx SINE Alu 0 310 1 1030 285 76 29 chr11 46331677 46331896 -102451576 + HAL1b LINE L1 351 558 -790 2124 142 43 56 chr11 46331896 46332291 -102451181 - MLT1B LTR MaLR 0 390 1 1030 285 76 29 chr11 46332291 46332517 -102450955 + HAL1b LINE L1 558 817 -531 26 50 0 0 chr11 46332676 46332716 -102450756 + AT_rich Low_complexity Low_complexity 1 40 0 847 298 71 29 chr11 46332719 46332907 -102450565 + L1MC/D LINE L1 4873 5052 -1268 1620 139 80 31 chr11 46332907 46333194 -102450278 - AluJo SINE Alu -11 301 1 847 298 71 29 chr11 46333194 46333675 -102449797 + L1MC/D LINE L1 5052 5568 -752 2227 114 7 0 chr11 46333675 46333973 -102449499 + AluSx SINE Alu 5 304 -8 314 186 72 31 chr11 46334058 46334155 -102449317 + L1MC4a LINE L1 6075 6175 -1633 658 237 26 42 chr11 46334176 46334366 -102449106 + MIR SINE MIR 64 250 -12 252 0 0 0 chr11 46335070 46335098 -102448374 + (A)n Simple_repeat Simple_repeat 1 28 0 325 298 26 19 chr11 46335274 46335395 -102448077 + MIR SINE MIR 4 135 -73 872 272 28 0 chr11 46335613 46335826 -102447646 - MER58A DNA MER1_type -2 222 4 249 275 101 0 chr11 46335870 46335939 -102447533 + MER5C DNA MER1_type 1 76 -248 454 319 70 13 chr11 46336786 46336943 -102446529 + L2 LINE L2 3107 3272 0 272 217 54 43 chr11 46337599 46337691 -102445781 + MIR SINE MIR 170 262 0 2325 96 0 3 chr11 46339881 46340174 -102443298 - AluSq SINE Alu -21 292 1 410 157 248 33 chr11 46340190 46340311 -102443161 - L1ME1 LINE L1 -15 6151 6005 362 176 33 44 chr11 46340454 46340636 -102442836 + CT-rich Low_complexity Low_complexity 1 180 0 4736 199 102 4 chr11 46343796 46344742 -102438730 - MER45B DNA AcHobo 0 1040 3 183 385 25 0 chr11 46344981 46345103 -102438369 + MIR SINE MIR 14 138 -124 256 260 0 0 chr11 46345779 46345829 -102437643 + L2 LINE L2 3213 3262 -10 353 325 61 65 chr11 46345854 46346085 -102437387 + MIR SINE MIR 2 231 -31 21 0 0 0 chr11 46346118 46346139 -102437333 + AT_rich Low_complexity Low_complexity 1 21 0 670 294 56 24 chr11 46346215 46346467 -102437005 + MIR SINE MIR 3 262 0 230 406 28 0 chr11 46347096 46347202 -102436270 - L2 LINE L2 -30 3242 3134 1799 137 27 38 chr11 46347441 46347733 -102435739 + AluJo SINE Alu 1 289 -23 643 151 0 0 chr11 46347818 46347911 -102435561 - AluJ SINE Alu -7 305 213 802 162 134 0 chr11 46347913 46348055 -102435417 - AluJ SINE Alu -151 161 1 2289 119 0 0 chr11 46348785 46349095 -102434377 - AluSx SINE Alu -1 311 2 595 307 9 33 chr11 46349936 46350151 -102433321 + MIR SINE MIR 53 262 0 2359 85 0 0 chr11 46350431 46350724 -102432748 - AluSg SINE Alu -17 293 1 21 0 0 0 chr11 46350732 46350753 -102432719 + AT_rich Low_complexity Low_complexity 1 21 0 328 267 199 15 chr11 46351663 46351794 -102431678 - MIR SINE MIR -33 229 75 1973 142 0 26 chr11 46351967 46352299 -102431173 - AluSx SINE Alu 0 312 1 269 324 15 52 chr11 46356381 46356517 -102426955 + MIR SINE MIR 24 154 -108 186 156 0 0 chr11 46356543 46356575 -102426897 - MIR SINE MIR -85 177 146 * 267 299 56 19 chr11 46356570 46356677 -102426795 + MIR SINE MIR 146 256 -6 195 129 0 0 chr11 46357647 46357678 -102425794 + (T)n Simple_repeat Simple_repeat 1 31 0 451 291 30 8 chr11 46358098 46358232 -102425240 - MIR SINE MIR -106 156 20 216 340 52 0 chr11 46359313 46359410 -102424062 - MIR SINE MIR -64 144 43 182 315 0 19 chr11 46359483 46359537 -102423935 + L2 LINE L2 3218 3270 -2 320 284 137 78 chr11 46359599 46359803 -102423669 - L2 LINE L2 0 3272 3057 1153 239 54 48 chr11 46359940 46360234 -102423238 + MER113 DNA MER1_type? 20 320 -201 1652 194 27 0 chr11 46360234 46360528 -102422944 + AluJb SINE Alu 3 304 -8 1153 239 54 48 chr11 46360528 46360730 -102422742 + MER113 DNA MER1_type? 320 519 -2 2170 111 7 0 chr11 46361327 46361616 -102421856 + AluSp SINE Alu 3 293 -20 2558 74 0 0 chr11 46361618 46361928 -102421544 + AluY SINE Alu 1 310 -1 1034 203 60 8 chr11 46361955 46362206 -102421266 + L1MB8 LINE L1 5914 6177 -1 225 154 0 0 chr11 46362206 46362245 -102421227 + GA-rich Low_complexity Low_complexity 1 39 0 194 355 0 0 chr11 46362396 46362472 -102421000 - MIR SINE MIR -6 256 181 2380 82 77 11 chr11 46363161 46363513 -102419959 - THE1C LTR MaLR 0 375 1 498 331 34 67 chr11 46366593 46366949 -102416523 + ERVL LTR ERVL 344 687 -5077 939 160 7 0 chr11 46367361 46367511 -102415961 - L1PA15 LINE L1 -142 6023 5873 1967 106 29 26 chr11 46367517 46367681 -102415791 - Tigger1 DNA MER2_type -1234 1184 1017 2141 153 97 5 chr11 46367681 46368073 -102415399 + MSTA LTR MaLR 1 428 0 1967 106 29 26 chr11 46368073 46368220 -102415252 - Tigger1 DNA MER2_type -1401 1017 872 761 92 0 0 chr11 46368197 46368295 -102415177 - MSTA LTR MaLR -330 98 1 * 355 183 0 0 chr11 46368295 46368347 -102415125 + Tigger1 DNA MER2_type 1021 1072 -1346 5574 142 43 2 chr11 46368320 46369228 -102414244 - Tigger1 DNA MER2_type -1473 945 1 377 301 15 8 chr11 46369461 46369594 -102413878 + ERVL LTR ERVL 1579 1712 -4052 1157 298 85 4 chr11 46369673 46370152 -102413320 + ERVL LTR ERVL 1827 2390 -3035 735 185 0 15 chr11 46370246 46370376 -102413096 - MER63 DNA MER1_type -282 780 27 487 330 20 0 chr11 46370390 46370593 -102412879 + ERVL LTR ERVL 2338 2544 -3110 403 250 62 0 chr11 46371016 46371128 -102412344 + LTR67 LTR ERVL 431 549 -8 1546 36 5 21 chr11 46371260 46371474 -102411998 + L1PA3 LINE L1 5967 6155 0 21 0 0 0 chr11 46371620 46371641 -102411831 + AT_rich Low_complexity Low_complexity 1 21 0 398 331 124 36 chr11 46371641 46372173 -102411299 + L2 LINE L2 1421 1999 -1315 1314 118 94 0 chr11 46372227 46372430 -102411042 - MER30 DNA MER1_type -6 224 3 572 280 86 110 chr11 46372432 46373225 -102410247 + L2 LINE L2 2072 2845 -469 182 304 0 0 chr11 46373580 46373626 -102409846 + L2 LINE L2 3264 3309 -4 1619 213 40 47 chr11 46373659 46374129 -102409343 + MLT1C LTR MaLR 1 467 0 189 121 0 0 chr11 46374239 46374272 -102409200 + (TCTCTG)n Simple_repeat Simple_repeat 4 36 0 212 185 19 0 chr11 46374282 46374336 -102409136 + (CA)n Simple_repeat Simple_repeat 1 55 0 252 337 35 0 chr11 46374711 46374797 -102408675 + L2 LINE L2 2708 2796 -518 484 332 77 35 chr11 46374880 46375190 -102408282 + L2 LINE L2 2991 3313 0 1483 245 85 8 chr11 46375365 46375846 -102407626 - LTR33 LTR ERVL 0 521 4 1950 86 10 14 chr11 46376078 46376368 -102407104 - L1MA1 LINE L1 0 6302 6014 5967 159 16 37 chr11 46376443 46378007 -102405465 - L1MA3 LINE L1 0 6305 4801 2182 112 0 10 chr11 46378007 46378320 -102405152 - AluSx SINE Alu -2 310 1 5967 159 16 37 chr11 46378320 46378885 -102404587 - L1MA3 LINE L1 -1504 4801 4226 258 290 29 80 chr11 46381222 46381360 -102402112 - L2 LINE L2 -12 3301 3171 182 250 114 0 chr11 46381402 46381446 -102402026 + MIR3 SINE MIR 120 168 -40 2683 156 49 8 chr11 46381518 46382030 -102401442 + L1MB4 LINE L1 5640 6172 -8 409 270 85 97 chr11 46382396 46382572 -102400900 - Charlie8 DNA MER1_type -96 245 71 2227 89 0 29 chr11 46382572 46382885 -102400587 + AluSg SINE Alu 1 304 -6 409 270 85 97 chr11 46382885 46382956 -102400516 - Charlie8 DNA MER1_type -270 71 1 1663 158 0 18 chr11 46383110 46383394 -102400078 - AluJb SINE Alu -33 279 1 223 239 60 15 chr11 46383398 46383465 -102400007 - L3 LINE CR1 -180 1397 1328 1109 227 40 4 chr11 46383603 46383854 -102399618 - MIR SINE MIR 0 262 3 226 307 64 43 chr11 46384006 46384146 -102399326 + L3b LINE CR1 1317 1459 -124 1746 170 0 6 chr11 46384185 46384497 -102398975 + AluJo SINE Alu 1 310 -2 811 216 0 0 chr11 46384693 46384865 -102398607 + FRAM SINE Alu 1 172 0 345 291 8 43 chr11 46384901 46385018 -102398454 - L3 LINE CR1 -3 1574 1462 484 260 66 54 chr11 46385310 46385667 -102397805 + MLT1H LTR MaLR 100 525 -17 919 290 105 35 chr11 46385710 46386252 -102397220 + MLT1K LTR MaLR 3 582 -6 1269 68 0 0 chr11 46386264 46386446 -102397026 + L1PA3 LINE L1 5989 6170 0 26 0 0 0 chr11 46386474 46386500 -102396972 + AT_rich Low_complexity Low_complexity 1 26 0 2490 129 14 3 chr11 46386753 46387124 -102396348 + THE1C LTR MaLR 1 375 0 907 286 86 12 chr11 46387885 46388210 -102395262 + MLT1I LTR MaLR 59 407 -2 249 240 80 27 chr11 46388344 46388419 -102395053 + L2 LINE L2 3235 3313 0 231 169 0 34 chr11 46390109 46390198 -102393274 + (CGGGG)n Simple_repeat Simple_repeat 5 90 0 3470 150 37 62 chr11 46391106 46391813 -102391659 + LTR8 LTR ERV1 2 690 -1 216 356 17 0 chr11 46392543 46392658 -102390814 - L2 LINE L2 -338 2976 2860 226 343 43 14 chr11 46392925 46393065 -102390407 + L2 LINE L2 2894 3037 -235 1459 269 76 18 chr11 46393165 46393905 -102389567 + L2 LINE L2 2525 3313 0 323 242 157 56 chr11 46394209 46394345 -102389127 - MER112 DNA MER1_type -58 202 42 2156 110 3 0 chr11 46394345 46394654 -102388818 + AluSq SINE Alu 1 310 -3 323 242 157 56 chr11 46394654 46394695 -102388777 - MER112 DNA MER1_type -218 42 7 713 255 10 54 chr11 46394754 46394958 -102388514 - MIR SINE MIR -3 259 65 935 266 102 4 chr11 46395230 46395505 -102387967 - LTR33 LTR ERVL -201 320 19 522 0 0 0 chr11 46395950 46396008 -102387464 + (TG)n Simple_repeat Simple_repeat 2 59 0 180 0 0 0 chr11 46398404 46398424 -102385048 + (A)n Simple_repeat Simple_repeat 1 20 0 1627 93 13 0 chr11 46398787 46399013 -102384459 - AluSc SINE Alu -12 297 69 420 242 52 81 chr11 46399588 46399796 -102383676 + MIR SINE MIR 23 222 -40 908 242 28 12 chr11 46400124 46400376 -102383096 - MIR SINE MIR -3 259 4 607 251 63 37 chr11 46400380 46400571 -102382901 - MIR SINE MIR -65 197 2 194 267 17 50 chr11 46401255 46401315 -102382157 - L2 LINE L2 -76 3196 3139 349 216 23 57 chr11 46401522 46401610 -102381862 - L2 LINE L2 0 3272 3188 311 324 99 14 chr11 46401582 46401724 -102381748 - L2 LINE L2 -415 2899 2746 * 256 281 0 0 chr11 46402300 46402364 -102381108 + MIR SINE MIR 199 262 0 1396 204 23 23 chr11 46402449 46402757 -102380715 + AluJo SINE Alu 1 308 -4 398 239 78 84 chr11 46402894 46403203 -102380269 - L1M3de LINE L1 -4704 1346 754 240 135 135 39 chr11 46403250 46403302 -102380170 + MADE1 DNA Mariner 24 80 0 675 276 132 12 chr11 46403302 46403559 -102379913 + L2 LINE L2 2162 2449 -865 2005 123 7 17 chr11 46403569 46403871 -102379601 + AluSx SINE Alu 1 299 -13 1094 264 159 17 chr11 46403874 46404417 -102379055 + L2 LINE L2 2678 3313 0 1856 98 66 21 chr11 46404590 46404759 -102378713 - AluSx SINE Alu -12 300 111 192 77 0 0 chr11 46404759 46404785 -102378687 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 1856 98 66 21 chr11 46404785 46404902 -102378570 - AluSx SINE Alu -201 111 1 2224 163 50 89 chr11 46405611 46405857 -102377615 - MLT2B1 LTR ERVL 0 520 266 2068 119 0 10 chr11 46405857 46406167 -102377305 + AluSg SINE Alu 1 307 -3 2224 163 50 89 chr11 46406167 46406459 -102377013 - MLT2B1 LTR ERVL -254 266 3 826 181 48 71 chr11 46406928 46407138 -102376334 - MER3 DNA MER1_type 0 209 5 212 323 0 0 chr11 46407260 46407322 -102376150 + L2 LINE L2 2915 2976 -296 865 261 153 54 chr11 46407427 46407536 -102375936 + LTR16C LTR ERVL 104 201 -290 2963 117 19 0 chr11 46407536 46407962 -102375510 - MER57B LTR ERV1 0 434 1 865 261 153 54 chr11 46407962 46408205 -102375267 + LTR16C LTR ERVL 201 491 0 2107 94 10 0 chr11 46408271 46408559 -102374913 + AluSg SINE Alu 1 291 -19 2066 118 3 19 chr11 46408724 46409039 -102374433 + AluSx SINE Alu 1 310 -2 567 362 32 34 chr11 46409130 46409567 -102373905 - L2 LINE L2 -556 2758 2323 795 143 93 0 chr11 46409571 46409711 -102373761 + MER5A DNA MER1_type 1 153 -36 751 219 24 76 chr11 46409721 46409931 -102373541 + MER63A DNA MER1_type 2 200 -10 183 338 13 0 chr11 46409998 46410075 -102373397 - L2 LINE L2 -1019 2295 2218 338 269 55 86 chr11 46410113 46410370 -102373102 - L2 LINE L2 -76 3196 2948 265 348 102 13 chr11 46410601 46410837 -102372635 + L2 LINE L2 2853 3109 -163 198 0 0 0 chr11 46411314 46411336 -102372136 + (CTG)n Simple_repeat Simple_repeat 3 24 0 2167 105 7 0 chr11 46411608 46411904 -102371568 - AluSx SINE Alu -14 298 1 395 311 126 0 chr11 46411939 46412074 -102371398 + L2 LINE L2 3162 3313 0 4823 194 11 5 chr11 46412243 46412608 -102370864 + L1MB3 LINE L1 5118 5479 -704 2159 122 0 0 chr11 46412608 46412904 -102370568 + AluSx SINE Alu 1 296 -16 4823 194 11 5 chr11 46412904 46413599 -102369873 + L1MB3 LINE L1 5479 6183 0 451 294 80 72 chr11 46413599 46413960 -102369512 - L2 LINE L2 -831 2483 2120 245 282 153 90 chr11 46413990 46414291 -102369181 + L2 LINE L2 2953 3272 0 420 231 110 83 chr11 46414827 46415091 -102368381 - MLT1H LTR MaLR 0 549 279 416 246 17 51 chr11 46415121 46415239 -102368233 - FLAM_A SINE Alu -1 141 28 262 253 46 11 chr11 46415370 46415457 -102368015 - MLT1H LTR MaLR -459 90 1 2289 95 0 3 chr11 46415901 46416197 -102367275 - AluSg SINE Alu -15 295 1 660 283 37 0 chr11 46416324 46416515 -102366957 - MARNA DNA Mariner -196 390 193 214 192 19 0 chr11 46418459 46418511 -102364961 + (CA)n Simple_repeat Simple_repeat 1 53 0 218 308 0 0 chr11 46419107 46419159 -102364313 + polypurine Low_complexity Low_complexity 6 57 0 219 217 43 14 chr11 46420368 46420437 -102363035 + CT-rich Low_complexity Low_complexity 2 72 0 24 32 0 0 chr11 46422030 46422061 -102361411 + AT_rich Low_complexity Low_complexity 1 31 0 27 0 0 0 chr11 46423463 46423490 -102359982 + GC_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr11 46423720 46423742 -102359730 + GC_rich Low_complexity Low_complexity 1 22 0 207 55 36 73 chr11 46424015 46424070 -102359402 + (GGGA)n Simple_repeat Simple_repeat 1 53 0 210 91 0 0 chr11 46426105 46426138 -102357334 + (CAG)n Simple_repeat Simple_repeat 2 34 0 228 35 0 0 chr11 46427179 46427208 -102356264 + (CCTCG)n Simple_repeat Simple_repeat 2 30 0 422 250 39 55 chr11 46429780 46429908 -102353564 - MIR3 SINE MIR -5 203 78 242 281 157 16 chr11 46430912 46431033 -102352439 + MIR3 SINE MIR 55 192 -16 * 356 230 0 27 chr11 46431025 46431099 -102352373 - L2 LINE L2 0 3313 3242 473 208 8 33 chr11 46432305 46432425 -102351047 + MIR SINE MIR 105 221 -41 311 43 0 22 chr11 46432441 46432487 -102350985 + (TTA)n Simple_repeat Simple_repeat 3 47 0 207 0 0 0 chr11 46432828 46432851 -102350621 + (TTA)n Simple_repeat Simple_repeat 2 24 0 28 48 0 0 chr11 46433321 46433363 -102350109 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr11 46433480 46433502 -102349970 + AT_rich Low_complexity Low_complexity 1 22 0 634 226 43 108 chr11 46433601 46433880 -102349592 + MIR SINE MIR 2 262 0 198 0 0 0 chr11 46434281 46434303 -102349169 + (A)n Simple_repeat Simple_repeat 1 22 0 2064 110 37 20 chr11 46434351 46434651 -102348821 - AluY SINE Alu -6 305 1 180 0 0 0 chr11 46434655 46434675 -102348797 + (T)n Simple_repeat Simple_repeat 1 20 0 21 36 0 0 chr11 46434905 46434933 -102348539 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr11 46435460 46435505 -102347967 + AT_rich Low_complexity Low_complexity 1 45 0 204 292 0 0 chr11 46437589 46437661 -102345811 + A-rich Low_complexity Low_complexity 1 72 0 28 29 0 0 chr11 46438300 46438335 -102345137 + AT_rich Low_complexity Low_complexity 1 35 0 201 147 0 0 chr11 46438361 46438395 -102345077 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 194 62 31 0 chr11 46439678 46439710 -102343762 + (GA)n Simple_repeat Simple_repeat 2 34 0 238 250 0 44 chr11 46439816 46439884 -102343588 - MIR3 SINE MIR -4 204 140 186 71 0 0 chr11 46439885 46439913 -102343559 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 648 233 0 0 chr11 46439913 46440033 -102343439 - FLAM_C SINE Alu -22 121 2 252 238 38 86 chr11 46440035 46440140 -102343332 - MIR SINE MIR -56 152 53 1863 152 6 29 chr11 46440262 46440577 -102342895 - AluJo SINE Alu 0 312 5 210 296 42 0 chr11 46440772 46440843 -102342629 - L2 LINE L2 -11 3261 3188 220 171 0 49 chr11 46440856 46440897 -102342575 + L2 LINE L2 3263 3301 -12 191 425 20 12 chr11 46441111 46441358 -102342114 - L2 LINE L2 -342 2972 2724 1018 126 69 6 chr11 46441463 46441655 -102341817 - AluSg/x SINE Alu 0 310 122 267 163 23 35 chr11 46441758 46441844 -102341628 + (TTATA)n Simple_repeat Simple_repeat 4 88 0 1648 152 14 51 chr11 46441903 46442199 -102341273 + AluJb SINE Alu 5 289 -23 515 248 32 25 chr11 46442356 46442513 -102340959 + L1ME LINE L1 5643 5800 -321 1816 158 10 3 chr11 46443768 46444059 -102339413 + AluJb SINE Alu 1 293 -19 21 57 0 0 chr11 46444157 46444192 -102339280 + AT_rich Low_complexity Low_complexity 1 35 0 1571 196 21 3 chr11 46444192 46444478 -102338994 - AluJo SINE Alu -21 291 1 919 179 78 0 chr11 46444480 46444659 -102338813 - L1MC1 LINE L1 -5 6328 6136 451 229 144 53 chr11 46444962 46445150 -102338322 - MER102a DNA MER1_type -18 312 108 2188 112 0 3 chr11 46445158 46445452 -102338020 - AluSc SINE Alu -16 293 1 607 200 0 8 chr11 46446051 46446171 -102337301 + MIR SINE MIR 114 232 -30 342 0 0 0 chr11 46446375 46446413 -102337059 + (CA)n Simple_repeat Simple_repeat 2 39 0 575 284 0 0 chr11 46446627 46446761 -102336711 - MIR SINE MIR -48 214 81 1616 221 118 45 chr11 46447446 46448135 -102335337 - L1MC5 LINE L1 -268 7693 6955 3154 125 17 4 chr11 46448263 46448728 -102334744 - L1PA16 LINE L1 -2 6164 5694 3206 108 15 24 chr11 46448915 46449379 -102334093 - LTR14 LTR ERVK 0 548 89 2798 37 0 0 chr11 46449479 46449807 -102333665 - L1P LINE L1 -2286 3860 3533 689 165 38 15 chr11 46449810 46449943 -102333529 + MER3 DNA MER1_type 72 207 -2 251 288 104 32 chr11 46450385 46450510 -102332962 - MARNA DNA Mariner -194 392 259 266 271 84 32 chr11 46450601 46450756 -102332716 - L2 LINE L2 -2 3311 3149 247 52 86 0 chr11 46450772 46450830 -102332642 + (TA)n Simple_repeat Simple_repeat 1 63 0 463 203 154 8 chr11 46451255 46451378 -102332094 + L2 LINE L2 3173 3313 0 720 261 115 72 chr11 46451495 46451855 -102331617 - MLT1H LTR MaLR 0 549 169 2167 147 0 0 chr11 46451855 46452167 -102331305 - AluSx SINE Alu 0 312 1 720 261 115 72 chr11 46452167 46452197 -102331275 - MLT1H LTR MaLR -380 169 142 6543 30 4 4 chr11 46452297 46453030 -102330442 + L1PA5 LINE L1 5422 6154 0 418 237 0 0 chr11 46453030 46453106 -102330366 - MER3 DNA MER1_type -133 76 1 3455 94 89 61 chr11 46453373 46453707 -102329765 - MER4B LTR ERV1 0 610 250 2305 99 0 0 chr11 46453707 46454010 -102329462 - AluSc SINE Alu -6 303 1 3455 94 89 61 chr11 46454010 46454268 -102329204 - MER4B LTR ERV1 -360 250 1 1936 173 0 0 chr11 46454382 46454682 -102328790 + AluJb SINE Alu 1 300 -12 768 219 118 31 chr11 46455174 46455461 -102328011 + L1MC5 LINE L1 7603 7914 -47 1724 190 143 94 chr11 46455929 46456587 -102326885 - L1ME3 LINE L1 -21 6141 5452 21 36 0 0 chr11 46456807 46456835 -102326637 + AT_rich Low_complexity Low_complexity 1 28 0 1281 234 58 21 chr11 46457472 46457899 -102325573 - L1MC4 LINE L1 0 8042 7600 618 266 116 5 chr11 46458006 46458213 -102325259 - MIR SINE MIR -29 233 4 290 212 59 12 chr11 46458397 46458482 -102324990 + MIR SINE MIR 174 262 0 183 319 0 0 chr11 46458479 46458526 -102324946 - MIR3 SINE MIR -45 163 117 * 23 33 0 0 chr11 46458968 46458998 -102324474 + AT_rich Low_complexity Low_complexity 1 30 0 399 277 157 15 chr11 46459953 46460227 -102323245 - L1MC4 LINE L1 -10 8032 7720 1861 160 3 3 chr11 46461036 46461349 -102322123 - AluSp SINE Alu 0 313 1 21 0 0 0 chr11 46462298 46462319 -102321153 + AT_rich Low_complexity Low_complexity 1 21 0 2374 96 0 0 chr11 46462541 46462842 -102320630 + AluSx SINE Alu 1 301 -11 1438 164 211 13 chr11 46463828 46464140 -102319332 + MLT1A2 LTR MaLR 1 374 0 334 327 118 0 chr11 46464425 46464535 -102318937 - L2 LINE L2 -327 2986 2864 821 276 42 45 chr11 46464543 46464851 -102318621 + L2 LINE L2 3006 3312 -1 1684 203 0 3 chr11 46465312 46465612 -102317860 - AluJb SINE Alu -13 299 1 668 139 0 0 chr11 46465620 46465721 -102317751 - AluJb SINE Alu -181 131 31 2138 114 30 7 chr11 46466255 46466552 -102316920 - AluSx SINE Alu -8 304 1 1821 100 135 3 chr11 46466646 46466965 -102316507 - MER46B DNA MER2_type 0 236 1 217 296 37 28 chr11 46467038 46467146 -102316326 - L2 LINE L2 -320 2952 2844 1425 198 136 54 chr11 46467194 46467658 -102315814 - MLT1D LTR MaLR -3 502 1 25 31 0 0 chr11 46467669 46467701 -102315771 + AT_rich Low_complexity Low_complexity 1 32 0 1502 158 75 43 chr11 46467823 46468101 -102315371 - AluJo SINE Alu -25 287 1 1429 213 39 47 chr11 46468259 46468326 -102315146 - MLT1C LTR MaLR -7 460 394 2287 110 3 0 chr11 46468326 46468625 -102314847 + AluSq SINE Alu 1 300 -13 1429 213 39 47 chr11 46468625 46469021 -102314451 - MLT1C LTR MaLR -73 394 1 1038 277 91 13 chr11 46469026 46469409 -102314063 - LTR16A LTR ERVL -13 437 25 1542 277 11 0 chr11 46469716 46469994 -102313478 + AluJo SINE Alu 1 281 -31 381 149 14 40 chr11 46470739 46470813 -102312659 - MIR3 SINE MIR -2 206 135 23 0 0 0 chr11 46473395 46473418 -102310054 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr11 46475341 46475371 -102308101 + AT_rich Low_complexity Low_complexity 1 30 0 29 0 0 0 chr11 46477680 46477709 -102305763 + AT_rich Low_complexity Low_complexity 1 29 0 302 296 0 37 chr11 46478294 46478402 -102305070 - MLT1-int LTR MaLR -830 541 438 447 171 20 33 chr11 46478657 46478787 -102304685 - MLT1H LTR MaLR -402 147 17 272 364 20 20 chr11 46478836 46479031 -102304441 + Charlie8 DNA MER1_type 2 196 -2221 579 232 155 77 chr11 46479144 46479401 -102304071 - L2 LINE L2 -63 3250 2952 2148 111 0 10 chr11 46479401 46479698 -102303774 + AluSc SINE Alu 1 294 -15 579 232 155 77 chr11 46479698 46479828 -102303644 - L2 LINE L2 -361 2952 2833 2310 112 0 6 chr11 46480256 46480570 -102302902 + AluSq SINE Alu 1 312 -1 243 113 48 0 chr11 46480639 46480701 -102302771 + (TA)n Simple_repeat Simple_repeat 1 65 0 350 252 65 32 chr11 46480701 46480824 -102302648 + L1MC4 LINE L1 6610 6736 -1306 1239 129 0 10 chr11 46482944 46483138 -102300334 - AluSg/x SINE Alu 0 312 121 887 248 74 21 chr11 46483211 46483453 -102300019 + MIR SINE MIR 8 262 0 1997 129 13 16 chr11 46483512 46483822 -102299650 - AluSx SINE Alu -3 309 1 1747 279 103 65 chr11 46484170 46485813 -102297659 + L1MEc LINE L1 35 1740 -4656 2225 112 0 3 chr11 46485981 46486277 -102297195 + AluSx SINE Alu 1 295 -17 242 70 70 0 chr11 46486333 46486376 -102297096 + A-rich Low_complexity Low_complexity 2 47 0 575 275 98 99 chr11 46486386 46486520 -102296952 + L2 LINE L2 2620 2753 -560 1754 173 39 23 chr11 46486520 46486827 -102296645 - AluSx SINE Alu 0 312 1 575 275 98 99 chr11 46486827 46487200 -102296272 + L2 LINE L2 2753 3127 -186 773 113 0 0 chr11 46487256 46487362 -102296110 + FLAM_C SINE Alu 14 119 -24 193 372 0 11 chr11 46487362 46487456 -102296016 + L2 LINE L2 3221 3313 0 359 243 153 0 chr11 46488051 46488162 -102295310 + MIR SINE MIR 75 202 -60 194 366 73 0 chr11 46488533 46488615 -102294857 - L2 LINE L2 -213 3059 2972 21 36 0 0 chr11 46488735 46488763 -102294709 + AT_rich Low_complexity Low_complexity 1 28 0 280 240 289 10 chr11 46489346 46489450 -102294022 - MIR SINE MIR -95 167 35 197 146 0 73 chr11 46489472 46489513 -102293959 - L3 LINE CR1 -630 947 910 522 280 20 20 chr11 46490095 46490245 -102293227 - MIR3 SINE MIR -40 168 19 1708 175 11 25 chr11 46490286 46490571 -102292901 + AluJb SINE Alu 7 287 -25 249 165 24 35 chr11 46490571 46490656 -102292816 + (TTATA)n Simple_repeat Simple_repeat 4 87 0 301 272 53 18 chr11 46491263 46491377 -102292095 - MIR SINE MIR -98 164 47 2437 83 3 0 chr11 46491379 46491680 -102291792 - AluSp SINE Alu -11 302 1 22 0 0 0 chr11 46493332 46493354 -102290118 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 46493788 46493809 -102289663 + AT_rich Low_complexity Low_complexity 1 21 0 502 236 8 41 chr11 46494362 46494485 -102288987 - L2 LINE L2 -2 3311 3193 22 0 0 0 chr11 46495454 46495476 -102287996 + AT_rich Low_complexity Low_complexity 1 22 0 188 0 0 69 chr11 46495862 46495891 -102287581 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 370 352 57 39 chr11 46495892 46496122 -102287350 + HAL1b LINE L1 1 234 -1114 701 220 24 30 chr11 46496141 46496309 -102287163 - MIR SINE MIR -21 241 75 1108 237 118 79 chr11 46496325 46497203 -102286269 + HAL1b LINE L1 242 1154 -194 1291 135 0 0 chr11 46497352 46497560 -102285912 + L1PA13 LINE L1 5954 6161 -2 196 248 133 57 chr11 46497605 46497710 -102285762 - MIR SINE MIR -115 147 35 479 232 22 55 chr11 46497718 46497899 -102285573 - HAL1b LINE L1 -32 1316 1142 182 333 11 81 chr11 46497963 46498050 -102285422 - MIR SINE MIR -164 98 18 312 128 2 0 chr11 46498832 46498889 -102284583 - THE1C LTR MaLR -209 166 117 2303 56 56 0 chr11 46500724 46501009 -102282463 + AluY SINE Alu 1 301 -10 1456 87 24 5 chr11 46501143 46501349 -102282123 - L1PA11 LINE L1 -1 6173 5964 334 280 100 0 chr11 46501594 46501694 -102281778 - L2 LINE L2 0 3272 3163 458 155 71 0 chr11 46501743 46501827 -102281645 - LTR51 LTR ERV1 0 671 582 * 1479 203 51 9 chr11 46501825 46502160 -102281312 - MER65C LTR ERV1 -112 349 1 558 324 154 20 chr11 46502207 46502301 -102281171 - L2 LINE L2 -201 3071 2991 1123 201 62 83 chr11 46502301 46502674 -102280798 - MLT1A1 LTR MaLR 0 365 1 558 324 154 20 chr11 46502674 46503041 -102280431 - L2 LINE L2 -281 2991 2543 693 268 66 66 chr11 46503478 46503844 -102279628 - MLT1J LTR MaLR -140 371 6 28 0 0 0 chr11 46504606 46504634 -102278838 + AT_rich Low_complexity Low_complexity 1 28 0 2425 77 0 3 chr11 46504655 46504965 -102278507 - AluY SINE Alu -1 310 2 252 0 0 0 chr11 46505045 46505073 -102278399 + (TA)n Simple_repeat Simple_repeat 2 29 0 1682 149 35 28 chr11 46505073 46505361 -102278111 - AluJo SINE Alu -18 294 5 255 294 59 15 chr11 46506319 46506455 -102277017 + HAL1 LINE L1 177 318 -2189 849 238 127 68 chr11 46506755 46507470 -102276002 + HAL1 LINE L1 884 1640 -867 751 108 36 43 chr11 46507519 46507658 -102275814 + L1MC3 LINE L1 7503 7640 -145 602 315 74 29 chr11 46507666 46508044 -102275428 - LTR16A LTR ERVL -55 395 1 2143 145 13 33 chr11 46508387 46508682 -102274790 - Tigger3(Golem) DNA MER2_type -1 3027 2740 1412 194 76 14 chr11 46508682 46508971 -102274501 + AluJo SINE Alu 1 307 -5 2143 145 13 33 chr11 46508971 46509069 -102274403 - Tigger3(Golem) DNA MER2_type -288 2740 2642 2095 112 3 53 chr11 46509292 46509615 -102273857 - AluSx SINE Alu -5 307 1 2499 61 0 3 chr11 46510172 46510483 -102272989 - AluY SINE Alu -1 310 1 2114 115 24 3 chr11 46510681 46510976 -102272496 - AluSx SINE Alu -11 301 1 1856 138 69 3 chr11 46511597 46511794 -102271678 - AluJb SINE Alu 0 330 105 333 0 0 0 chr11 46511794 46511831 -102271641 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 1856 138 69 3 chr11 46511831 46511944 -102271528 - AluJb SINE Alu -225 105 1 349 241 278 0 chr11 46511993 46512101 -102271371 + MIR SINE MIR 29 166 -96 381 331 38 15 chr11 46512146 46512279 -102271193 - MIR SINE MIR -108 154 19 236 296 81 75 chr11 46512953 46513139 -102270333 + L2 LINE L2 3009 3195 -118 2057 272 92 55 chr11 46513164 46513964 -102269508 - L2 LINE L2 -2 3311 2542 1961 138 31 0 chr11 46513964 46514254 -102269218 + AluSq SINE Alu 1 299 -14 2057 272 92 55 chr11 46514254 46514343 -102269129 - L2 LINE L2 -771 2542 2458 254 29 29 0 chr11 46514343 46514378 -102269094 + (TG)n Simple_repeat Simple_repeat 2 37 0 2057 272 92 55 chr11 46514378 46514731 -102268741 - L2 LINE L2 -855 2458 1923 415 213 19 56 chr11 46514705 46514813 -102268659 + L2 LINE L2 3210 3313 0 * 286 259 177 44 chr11 46514824 46514982 -102268490 - L2 LINE L2 -5 3308 3130 8809 40 0 1 chr11 46515581 46517417 -102266055 - L1PA5 LINE L1 -6 6148 4307 1675 36 0 0 chr11 46517420 46517614 -102265858 + L1P LINE L1 4078 4271 -1875 41 36 0 0 chr11 46518111 46518166 -102265306 + AT_rich Low_complexity Low_complexity 1 55 0 2302 84 13 0 chr11 46518199 46518507 -102264965 - AluSx SINE Alu 0 312 1 2240 80 33 13 chr11 46520204 46520506 -102262966 + AluSg SINE Alu 1 308 -2 1649 176 0 28 chr11 46520709 46521023 -102262449 - AluJo SINE Alu 0 308 3 204 97 0 0 chr11 46521028 46521059 -102262413 + (T)n Simple_repeat Simple_repeat 1 31 0 1312 160 8 27 chr11 46522612 46522875 -102260597 - L1MB8 LINE L1 0 6178 5921 829 289 93 22 chr11 46522979 46523387 -102260085 - L2 LINE L2 -556 2758 2322 774 158 0 0 chr11 46523612 46523732 -102259740 + AluJo SINE Alu 16 135 -177 2095 93 0 7 chr11 46523732 46524002 -102259470 + AluSq SINE Alu 1 268 -45 481 277 43 7 chr11 46524040 46524181 -102259291 - L2 LINE L2 -543 2771 2626 28 0 0 0 chr11 46524583 46524611 -102258861 + AT_rich Low_complexity Low_complexity 1 28 0 369 0 0 0 chr11 46525387 46525428 -102258044 + (TG)n Simple_repeat Simple_repeat 2 42 0 2024 176 19 3 chr11 46525605 46525964 -102257508 - MLT1A1 LTR MaLR 0 365 1 188 269 84 84 chr11 46526137 46526256 -102257216 - L2 LINE L2 0 3272 3154 772 272 51 55 chr11 46526300 46526557 -102256915 + MIR SINE MIR 2 257 -5 298 162 54 27 chr11 46526634 46526708 -102256764 - MLT1L LTR MaLR -11 604 529 481 219 96 34 chr11 46526732 46526910 -102256562 - L2 LINE L2 0 3313 3125 333 257 188 0 chr11 46527276 46527420 -102256052 - MIR SINE MIR -4 258 88 781 180 0 0 chr11 46528658 46528786 -102254686 - FLAM_A SINE Alu -5 128 1 2276 119 0 0 chr11 46529222 46529534 -102253938 - AluSx SINE Alu 0 312 1 353 250 25 0 chr11 46529593 46529713 -102253759 - L1ME4a LINE L1 -11 6110 5988 24 0 0 0 chr11 46530526 46530550 -102252922 + AT_rich Low_complexity Low_complexity 1 24 0 343 314 96 19 chr11 46531264 46531420 -102252052 - MIR3 SINE MIR -10 198 31 2380 85 0 0 chr11 46532171 46532465 -102251007 - AluSx SINE Alu -18 294 1 3152 146 6 32 chr11 46532735 46533153 -102250319 - MER72 LTR ERV1 0 722 319 2540 86 21 24 chr11 46533153 46533527 -102249945 + THE1C LTR MaLR 3 375 0 3152 146 6 32 chr11 46533527 46533637 -102249835 - MER72 LTR ERV1 -403 319 208 1678 161 21 10 chr11 46533639 46533930 -102249542 - AluJo SINE Alu -16 296 3 186 43 0 0 chr11 46533944 46533967 -102249505 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 653 259 8 0 chr11 46533973 46534104 -102249368 - AluJb SINE Alu -44 268 137 208 200 30 130 chr11 46534450 46534550 -102248922 + MIR SINE MIR 94 183 -79 202 350 10 10 chr11 46534561 46534658 -102248814 + MIR SINE MIR 160 256 -6 4486 163 53 21 chr11 46535927 46536859 -102246613 - L1MB5 LINE L1 -6 6168 5208 713 120 9 0 chr11 46536869 46536977 -102246495 - THE1C LTR MaLR 0 375 267 2022 138 13 0 chr11 46538088 46538386 -102245086 + AluJb SINE Alu 1 302 -10 500 169 0 22 chr11 46539002 46539091 -102244381 + FLAM_C SINE Alu 35 121 -22 252 0 0 0 chr11 46539091 46539119 -102244353 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 186 43 0 0 chr11 46541008 46541031 -102242441 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 23 54 0 0 chr11 46541158 46541195 -102242277 + AT_rich Low_complexity Low_complexity 1 37 0 27 0 0 0 chr11 46542751 46542778 -102240694 + AT_rich Low_complexity Low_complexity 1 27 0 28 0 0 0 chr11 46542888 46542916 -102240556 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr11 46544127 46544151 -102239321 + AT_rich Low_complexity Low_complexity 1 24 0 24 53 0 0 chr11 46544214 46544252 -102239220 + AT_rich Low_complexity Low_complexity 1 38 0 195 129 0 0 chr11 46544683 46544714 -102238758 + (T)n Simple_repeat Simple_repeat 1 31 0 271 138 0 35 chr11 46545363 46545421 -102238051 + L1MA7 LINE L1 6227 6282 -9 59 0 0 0 chr11 46545424 46545483 -102237989 + AT_rich Low_complexity Low_complexity 1 59 0 229 255 29 49 chr11 46546733 46546835 -102236637 + MIR SINE MIR 122 221 -41 455 296 43 0 chr11 46546891 46547006 -102236466 + MIR3 SINE MIR 81 200 -8 2235 119 0 0 chr11 46547449 46547760 -102235712 - AluSq SINE Alu -2 311 1 261 143 6 50 chr11 46548184 46548345 -102235127 - HERV17 LTR ERV1 -7761 865 712 407 236 112 0 chr11 46548849 46548938 -102234534 + MIR3 SINE MIR 84 182 -26 879 106 16 0 chr11 46549667 46549790 -102233682 - L1PB4 LINE L1 -12 6144 6020 2132 113 0 0 chr11 46549905 46550228 -102233244 + AluSx SINE Alu 1 323 0 2338 96 3 3 chr11 46550448 46550761 -102232711 + AluSp SINE Alu 1 313 0 263 247 65 21 chr11 46550933 46551026 -102232446 - L1MC4 LINE L1 -565 7477 7381 735 218 48 75 chr11 46551030 46551178 -102232294 - L1MC4 LINE L1 -734 7308 7170 2332 99 0 0 chr11 46551178 46551471 -102232001 + AluSx SINE Alu 1 293 -19 735 218 48 75 chr11 46551471 46551616 -102231856 - L1MC4 LINE L1 -872 7170 7023 26 64 0 0 chr11 46552022 46552069 -102231403 + AT_rich Low_complexity Low_complexity 1 47 0 1786 149 0 88 chr11 46552131 46552459 -102231013 - AluJb SINE Alu -12 300 2 2260 104 0 10 chr11 46553037 46553344 -102230128 + AluSx SINE Alu 1 304 -8 200 275 138 9 chr11 46554401 46554510 -102228962 - MIR SINE MIR -8 254 132 2027 128 60 37 chr11 46554567 46554919 -102228553 - THE1B LTR MaLR 0 364 5 30 45 0 0 chr11 46554944 46554988 -102228484 + AT_rich Low_complexity Low_complexity 1 44 0 536 262 78 7 chr11 46555957 46556098 -102227374 - L2 LINE L2 -2 3311 3161 2952 3 0 0 chr11 46556098 46556415 -102227057 + AluYb8 SINE Alu 1 317 -1 403 328 61 6 chr11 46557108 46557288 -102226184 - ERVL LTR ERVL -5073 691 502 228 238 48 0 chr11 46557738 46557801 -102225671 - LTR50 LTR ERVL 0 795 730 1666 179 0 62 chr11 46558470 46558642 -102224830 - AluJb SINE Alu -7 305 161 1961 138 0 20 chr11 46558642 46558946 -102224526 - AluSx SINE Alu -14 298 1 1666 179 0 62 chr11 46558946 46559098 -102224374 - AluJb SINE Alu -151 161 1 557 244 39 94 chr11 46559762 46560070 -102223402 - MER31-int LTR ERV1 -985 3951 3661 2203 234 78 73 chr11 46560191 46560781 -102222691 - MLT1H1 LTR MaLR 0 555 3 210 134 45 0 chr11 46562335 46562402 -102221070 + (TA)n Simple_repeat Simple_repeat 1 70 0 1262 249 95 2 chr11 46563224 46563830 -102219642 - L1MEc LINE L1 -3524 2691 2072 1310 246 123 54 chr11 46563836 46564588 -102218884 - L1MEc LINE L1 -4580 1816 997 2218 70 28 0 chr11 46564588 46564873 -102218599 - AluY SINE Alu -18 293 1 1310 246 123 54 chr11 46564873 46564971 -102218501 - L1MEc LINE L1 -5399 997 907 910 227 15 103 chr11 46565006 46565279 -102218193 - L1MEc LINE L1 -6112 284 36 242 306 157 16 chr11 46566758 46566879 -102216593 - MIR3 SINE MIR -56 152 15 23 54 0 0 chr11 46567043 46567080 -102216392 + AT_rich Low_complexity Low_complexity 1 37 0 502 200 0 0 chr11 46567113 46567198 -102216274 - AluSg/x SINE Alu -22 287 203 3181 118 49 48 chr11 46567198 46567766 -102215706 - LTR12 LTR ERV1 -133 581 13 1488 122 0 14 chr11 46567766 46567979 -102215493 - AluSq SINE Alu -95 218 9 450 216 93 25 chr11 46568945 46569107 -102214365 + Charlie8 DNA MER1_type 92 264 -2153 1755 168 3 26 chr11 46569194 46569498 -102213974 + AluJo SINE Alu 2 298 -14 440 237 15 17 chr11 46569813 46569973 -102213499 - L1ME3 LINE L1 -150 6020 5863 2201 120 0 7 chr11 46571430 46571730 -102211742 + AluSx SINE Alu 1 298 -14 891 141 6 55 chr11 46571730 46571893 -102211579 + AluSg/x SINE Alu 132 286 -24 1685 181 20 7 chr11 46573012 46573305 -102210167 - AluJo SINE Alu -15 297 1 29 0 0 0 chr11 46574055 46574084 -102209388 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 46574379 46574400 -102209072 + AT_rich Low_complexity Low_complexity 1 21 0 2140 102 0 14 chr11 46574459 46574752 -102208720 - AluSx SINE Alu -9 303 15 21 0 0 0 chr11 46574847 46574868 -102208604 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr11 46575042 46575073 -102208399 + AT_rich Low_complexity Low_complexity 1 31 0 562 257 139 63 chr11 46575330 46575889 -102207583 + MLT1G1 LTR MaLR 1 555 0 664 261 48 34 chr11 46575999 46576290 -102207182 + L1M4 LINE L1 5290 5584 -594 836 205 0 6 chr11 46576485 46576646 -102206826 + Tigger7 DNA MER2_type 1 160 -545 434 144 100 0 chr11 46576678 46576768 -102206704 + Tigger7 DNA MER2_type 2389 2487 0 249 294 98 0 chr11 46577172 46577274 -102206198 + L1ME4a LINE L1 5506 5617 -504 * 1440 155 80 54 chr11 46577266 46577311 -102206161 + L1ME1 LINE L1 4334 4376 -1770 204 40 0 0 chr11 46577311 46577336 -102206136 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1758 150 11 4 chr11 46577339 46577612 -102205860 - AluSx SINE Alu -37 275 1 1440 155 80 54 chr11 46577612 46577988 -102205484 + L1ME1 LINE L1 4377 4770 -1376 3849 127 64 101 chr11 46578056 46578959 -102204513 - MER21A LTR ERV1 -28 903 34 692 223 17 6 chr11 46578959 46579134 -102204338 + L1ME1 LINE L1 4917 5093 -1053 41893 41 4 2 chr11 46579135 46585276 -102198196 - L1PA4 LINE L1 0 6155 1 948 156 45 16 chr11 46585284 46585527 -102197945 + L1ME1 LINE L1 5081 5330 -816 1967 211 31 39 chr11 46585534 46586078 -102197394 + LTR55 LTR ERV 3 542 -6 249 135 0 169 chr11 46586084 46586173 -102197299 + L1ME1 LINE L1 5333 5406 -756 2078 198 129 26 chr11 46586234 46586577 -102196895 + L1ME1 LINE L1 5421 5727 -439 2035 151 0 0 chr11 46586577 46586876 -102196596 + AluSx SINE Alu 1 299 -13 2078 198 129 26 chr11 46586876 46587119 -102196353 + L1ME1 LINE L1 5727 6068 -98 842 156 15 7 chr11 46587266 46587401 -102196071 + BC200 scRNA scRNA 2 137 -63 487 226 116 6 chr11 46587403 46587584 -102195888 + L1ME4a LINE L1 5661 5861 -260 854 185 0 73 chr11 46587788 46587934 -102195538 + FRAM SINE Alu 1 133 -169 1771 141 0 22 chr11 46587934 46588112 -102195360 - AluSx SINE Alu -13 299 127 369 0 0 0 chr11 46588112 46588153 -102195319 + (TG)n Simple_repeat Simple_repeat 2 42 0 1771 141 0 22 chr11 46588153 46588244 -102195228 - AluSx SINE Alu -185 127 36 854 185 0 73 chr11 46588244 46588275 -102195197 + FRAM SINE Alu 133 165 -1 1964 115 3 61 chr11 46588821 46589134 -102194338 - AluSx SINE Alu -17 295 1 739 191 23 0 chr11 46589135 46589266 -102194206 - AluJo SINE Alu -178 134 1 4690 140 20 24 chr11 46589403 46589581 -102193891 - LTR39 LTR ERV1 0 783 606 2095 103 43 17 chr11 46589581 46589883 -102193589 - AluSg SINE Alu 0 310 1 4690 140 20 24 chr11 46589883 46590490 -102192982 - LTR39 LTR ERV1 -177 606 1 1731 160 0 0 chr11 46590989 46591251 -102192221 - AluSx SINE Alu -48 264 3 263 263 163 0 chr11 46591352 46591432 -102192040 - MIR SINE MIR -91 171 79 246 128 0 0 chr11 46591487 46591526 -102191946 + (CA)n Simple_repeat Simple_repeat 2 40 0 586 281 33 38 chr11 46591697 46591832 -102191640 - MIR SINE MIR -31 231 96 2457 205 120 7 chr11 46591832 46592417 -102191055 + MLT1E1 LTR MaLR 4 654 0 586 281 33 38 chr11 46592417 46592491 -102190981 - MIR SINE MIR -166 96 23 256 24 49 0 chr11 46592646 46592687 -102190785 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 11836 32 1 0 chr11 46592687 46594852 -102188620 - L1PA3 LINE L1 -13 6142 3973 8009 30 0 1 chr11 46594852 46595879 -102187593 + L1PA3 LINE L1 2941 3966 -2180 2271 107 0 7 chr11 46597235 46597534 -102185938 - AluSq SINE Alu -16 297 1 29 60 0 0 chr11 46597954 46598004 -102185468 + AT_rich Low_complexity Low_complexity 1 50 0 325 217 83 122 chr11 46598321 46598501 -102184971 + L1MC4 LINE L1 5761 5933 -1875 2018 194 37 82 chr11 46599363 46599465 -102184007 + L1MC4 LINE L1 6865 6970 -1072 2050 120 20 0 chr11 46599465 46599757 -102183715 + AluSx SINE Alu 1 298 -14 2018 194 37 82 chr11 46599757 46600354 -102183118 + L1MC4 LINE L1 6970 7784 -258 1014 149 25 106 chr11 46600395 46600481 -102182991 - Charlie1 DNA MER1_type 0 2761 2670 2502 65 3 20 chr11 46600481 46600822 -102182650 - L1PA7 LINE L1 0 6154 5820 1014 149 25 106 chr11 46600822 46601056 -102182416 - Charlie1 DNA MER1_type -91 2670 2467 1630 207 73 5 chr11 46601058 46601368 -102182104 - LTR2 LTR ERV1 0 449 107 414 0 0 0 chr11 46601368 46601414 -102182058 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1630 207 73 5 chr11 46601414 46601485 -102181987 - LTR2 LTR ERV1 -342 107 42 2048 209 20 12 chr11 46601565 46602273 -102181199 - HERVE LTR ERV1 -2 7811 7020 1076 191 10 10 chr11 46602361 46602565 -102180907 - HERVE LTR ERV1 -2131 6295 6092 3297 190 69 13 chr11 46602589 46603356 -102180116 - Charlie1 DNA MER1_type -299 2462 1653 1240 142 9 32 chr11 46603510 46603728 -102179744 + AluSg SINE Alu 3 215 -95 1661 11 0 0 chr11 46603937 46604119 -102179353 - AluYa5 SINE Alu -8 303 122 586 347 60 13 chr11 46604379 46604679 -102178793 - L2 LINE L2 -382 2932 2619 790 310 40 40 chr11 46604778 46605149 -102178323 - L2 LINE L2 -2810 504 134 2205 108 0 3 chr11 46606795 46607101 -102176371 - AluSx SINE Alu -7 305 1 788 129 17 0 chr11 46610772 46610888 -102172584 + FLAM_C SINE Alu 1 118 -15 22 80 0 0 chr11 46610888 46610938 -102172534 + AT_rich Low_complexity Low_complexity 1 50 0 231 36 0 0 chr11 46611418 46611446 -102172026 + (TG)n Simple_repeat Simple_repeat 2 29 0 240 394 0 0 chr11 46612610 46612681 -102170791 + L2 LINE L2 3148 3218 -54 222 337 68 68 chr11 46612716 46613205 -102170267 + L2 LINE L2 2184 2672 -642 575 185 59 44 chr11 46613282 46613417 -102170055 - L2 LINE L2 -14 3299 3163 978 277 106 35 chr11 46613446 46613901 -102169571 - L2 LINE L2 -598 2716 2230 462 271 129 0 chr11 46613929 46614084 -102169388 - MIR SINE MIR 0 262 88 2210 81 0 7 chr11 46614199 46614507 -102168965 + AluSg SINE Alu 1 306 0 23 33 0 0 chr11 46615102 46615132 -102168340 + AT_rich Low_complexity Low_complexity 1 30 0 1109 108 18 0 chr11 46615554 46615721 -102167751 - L1PA15 LINE L1 -4 6161 5992 1695 123 7 60 chr11 46616108 46616408 -102167064 - AluSx SINE Alu -28 284 1 257 217 147 0 chr11 46616480 46616610 -102166862 - L1ME4a LINE L1 -83 6038 5880 2468 144 55 0 chr11 46616982 46617386 -102166086 - MSTB LTR MaLR 0 426 1 342 80 0 0 chr11 46617739 46617789 -102165683 + (GA)n Simple_repeat Simple_repeat 1 50 0 373 209 22 0 chr11 46618388 46618479 -102164993 - MIR SINE MIR -120 142 50 1607 196 0 0 chr11 46618479 46618773 -102164699 - AluJo SINE Alu 0 305 12 381 344 43 13 chr11 46618799 46619213 -102164259 + LTR16B LTR ERVL 8 463 -1 4426 82 39 46 chr11 46619406 46619543 -102163929 + MER4A LTR ERV1 1 138 -526 2392 92 0 0 chr11 46619543 46619868 -102163604 + AluSx SINE Alu 1 325 0 4426 82 39 46 chr11 46619868 46620396 -102163076 + MER4A LTR ERV1 138 664 0 229 306 35 12 chr11 46620504 46620589 -102162883 + MLT1J2 LTR MaLR 2 88 -362 368 224 50 60 chr11 46620686 46620854 -102162618 + MLT1J LTR MaLR 232 460 -51 2041 145 10 0 chr11 46621732 46622029 -102161443 + AluSx SINE Alu 1 300 -12 1770 138 7 3 chr11 46622075 46622358 -102161114 - L1PA15 LINE L1 0 6165 5882 1960 177 85 28 chr11 46622380 46622814 -102160658 + LTR2B LTR ERV1 32 490 0 1043 100 31 0 chr11 46623072 46623232 -102160240 + MER41B LTR ERV1 1 165 -470 202 211 0 0 chr11 46623901 46623939 -102159533 + (CA)n Simple_repeat Simple_repeat 2 39 0 197 211 379 0 chr11 46626111 46626206 -102157266 - MIR SINE MIR -14 248 118 252 310 53 3 chr11 46626725 46626811 -102156661 - MIR SINE MIR -61 147 59 2111 138 0 10 chr11 46626978 46627290 -102156182 + AluSx SINE Alu 1 309 -3 490 209 129 19 chr11 46627485 46627804 -102155668 - MLT1J2 LTR MaLR 0 450 37 2346 101 0 7 chr11 46629054 46629361 -102154111 + AluSx SINE Alu 5 309 -3 898 185 48 16 chr11 46631002 46631191 -102152281 - MER3 DNA MER1_type -8 201 7 575 266 55 25 chr11 46631565 46631764 -102151708 + MIR SINE MIR 37 241 -21 250 234 153 18 chr11 46634732 46634843 -102148629 - L1ME LINE L1 -216 5905 5780 231 297 31 0 chr11 46634857 46634921 -102148551 - L2 LINE L2 -13 3300 3235 664 253 91 78 chr11 46634997 46635272 -102148200 - L1ME LINE L1 -430 5691 5408 2418 97 0 6 chr11 46635272 46635583 -102147889 - AluSx SINE Alu -3 309 1 664 253 91 78 chr11 46635583 46635702 -102147770 - L1ME LINE L1 -713 5408 5292 341 282 88 37 chr11 46636111 46636327 -102147145 - MIR SINE MIR -33 229 3 601 262 80 63 chr11 46636419 46636705 -102146767 - MER102b DNA MER1_type -35 306 16 196 284 80 23 chr11 46637090 46637178 -102146294 + L2 LINE L2 3134 3226 -46 1756 147 87 82 chr11 46638453 46638587 -102144885 - Charlie1a DNA MER1_type -1340 1421 1289 2441 95 0 0 chr11 46638587 46638893 -102144579 + AluSg SINE Alu 1 306 -4 1756 147 87 82 chr11 46638893 46639220 -102144252 - Charlie1a DNA MER1_type -1472 1289 958 469 171 34 0 chr11 46641874 46641962 -102141510 - Charlie1a DNA MER1_type -481 974 884 1197 117 50 54 chr11 46641963 46642185 -102141287 + AluJo SINE Alu 86 306 -6 1178 177 13 13 chr11 46642189 46642415 -102141057 - Charlie1a DNA MER1_type -562 893 668 3404 58 21 12 chr11 46642415 46642808 -102140664 + MLT2A1 LTR ERVL 1 400 -44 288 0 0 0 chr11 46642808 46642840 -102140632 + (TG)n Simple_repeat Simple_repeat 2 33 0 3404 58 21 12 chr11 46642840 46642878 -102140594 + MLT2A1 LTR ERVL 400 436 -8 2817 214 76 20 chr11 46642874 46643515 -102139957 - Charlie1a DNA MER1_type -777 678 2 * 2333 126 25 3 chr11 46643542 46643898 -102139574 - THE1B LTR MaLR 0 364 1 254 143 32 48 chr11 46644202 46644265 -102139207 - L1MB1 LINE L1 -8 6181 6120 521 202 0 32 chr11 46645192 46645316 -102138156 + FLAM_A SINE Alu 20 139 -3 664 172 0 0 chr11 46645437 46645536 -102137936 - AluJ/FLAM SINE Alu -211 101 3 1140 193 28 0 chr11 46645797 46646010 -102137462 + MER20 DNA MER1_type 1 219 0 204 97 0 0 chr11 46647719 46647750 -102135722 + (TAA)n Simple_repeat Simple_repeat 2 32 0 476 295 76 31 chr11 46647755 46647979 -102135493 - MIR SINE MIR -6 256 23 1169 165 128 77 chr11 46648073 46648311 -102135161 - MER2 DNA MER2_type 0 345 84 2473 78 0 0 chr11 46648311 46648604 -102134868 - AluSc SINE Alu -16 293 1 1169 165 128 77 chr11 46648604 46648692 -102134780 - MER2 DNA MER2_type -261 84 2 288 255 78 0 chr11 46649145 46649247 -102134225 + L2 LINE L2 2909 3018 -254 463 254 87 0 chr11 46649748 46649865 -102133607 + MIR SINE MIR 78 210 -52 2144 114 13 0 chr11 46649865 46650163 -102133309 + AluSq SINE Alu 3 304 -9 463 254 87 0 chr11 46650163 46650183 -102133289 + MIR SINE MIR 210 227 -35 554 288 28 17 chr11 46650309 46650486 -102132986 - MARNA DNA Mariner -123 463 285 298 269 199 7 chr11 46650532 46650673 -102132799 - MARNA DNA Mariner -411 175 8 1866 129 7 40 chr11 46650785 46651088 -102132384 + AluJb SINE Alu 1 293 -19 2329 94 0 28 chr11 46651092 46651410 -102132062 + AluY SINE Alu 2 310 -1 1366 284 0 106 chr11 46651573 46651904 -102131568 + AluSq SINE Alu 1 296 -7 2652 118 15 0 chr11 46652102 46652492 -102130980 - L1PA13 LINE L1 -5 6158 5763 188 233 23 0 chr11 46653502 46653545 -102129927 + L2 LINE L2 3221 3264 -8 1827 170 0 13 chr11 46654161 46654461 -102129011 + AluJo SINE Alu 1 296 -16 180 0 0 0 chr11 46654821 46654841 -102128631 + (A)n Simple_repeat Simple_repeat 1 20 0 202 278 175 10 chr11 46657031 46657128 -102126344 - MER5A DNA MER1_type -22 167 55 366 243 9 37 chr11 46657475 46657582 -102125890 - MER5A DNA MER1_type -43 146 43 301 207 118 59 chr11 46657808 46657943 -102125529 + MER5A DNA MER1_type 47 189 0 * 368 242 16 23 chr11 46657943 46658067 -102125405 + MIR SINE MIR 17 139 -123 359 246 230 0 chr11 46658929 46659104 -102124368 + MIR SINE MIR 37 250 -12 230 186 34 17 chr11 46659716 46659775 -102123697 + MER5A DNA MER1_type 129 188 -1 612 221 9 0 chr11 46659785 46659898 -102123574 + MER81 DNA DNA 1 114 0 566 256 80 28 chr11 46660046 46660222 -102123250 + LTR41 LTR ERVL 3 187 -586 278 294 12 0 chr11 46660296 46660381 -102123091 + ERVL LTR ERVL 549 634 -5130 2208 310 67 58 chr11 46660424 46661564 -102121908 + ERVL LTR ERVL 753 1910 -3854 2108 81 59 0 chr11 46661564 46661837 -102121635 - AluY SINE Alu -22 289 1 2208 310 67 58 chr11 46661837 46662102 -102121370 + ERVL LTR ERVL 1910 2171 -3593 1593 121 13 4 chr11 46662104 46662343 -102121129 - Tigger5 DNA MER2_type -2 2321 2081 536 172 43 0 chr11 46662335 46662428 -102121044 - Tigger5 DNA MER2_type -2225 98 2 * 1637 244 21 33 chr11 46662428 46662858 -102120614 + ERVL LTR ERVL 2169 2593 -3171 2408 85 0 7 chr11 46662885 46663190 -102120282 + AluY SINE Alu 1 303 -8 1256 99 6 0 chr11 46663190 46663351 -102120121 + AluSg/x SINE Alu 134 295 -17 557 320 57 0 chr11 46663351 46663579 -102119893 + ERVL LTR ERVL 2615 2855 -2909 2563 262 87 14 chr11 46663608 46664344 -102119128 + ERVL LTR ERVL 4142 4931 -833 381 299 43 52 chr11 46664340 46664551 -102118921 + ERVL LTR ERVL 5101 5309 -455 * 571 221 101 20 chr11 46664961 46665110 -102118362 + LTR41 LTR ERVL 7 167 -606 186 43 0 0 chr11 46665166 46665189 -102118283 + (TC)n Simple_repeat Simple_repeat 2 24 0 1642 100 9 0 chr11 46665189 46665399 -102118073 - AluSg/x SINE Alu -32 280 69 1628 221 68 25 chr11 46665441 46665884 -102117588 + MLT1C LTR MaLR 6 467 0 607 240 19 114 chr11 46665958 46666142 -102117330 + LTR41 LTR ERVL 480 680 -93 2961 116 33 2 chr11 46666142 46666591 -102116881 + MER4C LTR ERV1 2 464 -1 607 240 19 114 chr11 46666591 46666667 -102116805 + LTR41 LTR ERVL 680 707 -66 1989 142 3 37 chr11 46666667 46666990 -102116482 - AluSx SINE Alu 0 312 1 607 240 19 114 chr11 46666990 46667045 -102116427 + LTR41 LTR ERVL 707 766 -7 257 318 39 8 chr11 46667256 46667385 -102116087 + MER5A DNA MER1_type 1 133 -56 * 294 192 42 108 chr11 46667289 46667387 -102116085 - MER5A DNA MER1_type -22 167 77 1721 91 141 8 chr11 46667387 46667650 -102115822 - AluSx SINE Alu -13 299 2 294 192 42 108 chr11 46667650 46667671 -102115801 - MER5A DNA MER1_type -112 77 56 291 218 24 147 chr11 46668508 46668599 -102114873 - MIR SINE MIR 0 262 200 3012 6 0 0 chr11 46668599 46668917 -102114555 - AluYb8 SINE Alu 0 318 1 291 218 24 147 chr11 46668917 46668995 -102114477 - MIR SINE MIR -62 200 114 213 366 0 12 chr11 46669275 46669357 -102114115 + MIR SINE MIR 26 106 -156 456 329 15 0 chr11 46669402 46669539 -102113933 - L2 LINE L2 0 3272 3134 1020 232 99 81 chr11 46669693 46670038 -102113434 - MLT1H LTR MaLR -198 351 1 292 105 0 0 chr11 46670162 46670200 -102113272 + U2 snRNA snRNA 1 38 -150 2113 104 10 20 chr11 46670672 46670969 -102112503 - AluSq SINE Alu -17 296 3 232 189 11 11 chr11 46671637 46671727 -102111745 + A-rich Low_complexity Low_complexity 1 90 0 186 43 0 0 chr11 46671866 46671889 -102111583 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 419 289 99 41 chr11 46671921 46672315 -102111157 + L1MEd LINE L1 544 960 -5159 2038 155 0 0 chr11 46672740 46673044 -102110428 - AluJb SINE Alu -8 304 1 473 264 51 71 chr11 46673094 46673529 -102109943 + L1MCc LINE L1 1088 1681 -4991 1762 118 4 4 chr11 46673529 46673775 -102109697 - AluSx SINE Alu -25 287 42 473 264 51 71 chr11 46673775 46673874 -102109598 + L1MCc LINE L1 1681 1780 -4892 313 292 0 0 chr11 46674057 46674170 -102109302 + C-rich Low_complexity Low_complexity 1 113 0 2971 152 121 38 chr11 46674584 46675261 -102108211 + L1MC2 LINE L1 5612 6344 0 494 257 94 103 chr11 46675786 46675933 -102107539 + L1MEd LINE L1 561 708 -5423 1889 153 3 3 chr11 46675933 46676220 -102107252 + AluJo SINE Alu 1 287 -25 494 257 94 103 chr11 46676220 46676480 -102106992 + L1MEd LINE L1 708 969 -5162 1919 141 0 11 chr11 46676480 46676764 -102106708 - AluJo SINE Alu -31 281 1 494 257 94 103 chr11 46676764 46676940 -102106532 + L1MEd LINE L1 969 1034 -5097 2113 108 13 16 chr11 46676940 46677247 -102106225 + AluSx SINE Alu 1 306 -6 494 257 94 103 chr11 46677247 46677527 -102105945 + L1MEd LINE L1 1034 1315 -4816 348 240 42 21 chr11 46677538 46677634 -102105838 - HsTC2 DNA Tc2 -2 1896 1799 2137 71 10 51 chr11 46677770 46678116 -102105356 + AluSx SINE Alu 1 334 0 271 277 76 28 chr11 46678376 46678590 -102104882 + L1M1 LINE L1 3492 3719 -3846 487 265 93 29 chr11 46678603 46678882 -102104590 + L1M1 LINE L1 3751 4047 -3518 680 131 0 0 chr11 46678915 46679014 -102104458 + AluJ/FLAM SINE Alu 2 100 -212 667 197 23 0 chr11 46679015 46679147 -102104325 + AluJo/FRAM SINE Alu 165 299 -13 2488 69 3 3 chr11 46679195 46679501 -102103971 + AluSg SINE Alu 1 306 -4 1372 164 73 31 chr11 46679542 46679829 -102103643 + AluJo SINE Alu 1 299 -13 1603 198 86 68 chr11 46679859 46680348 -102103124 - MLT1D LTR MaLR -7 498 1 403 221 88 15 chr11 46680361 46680497 -102102975 - MIR SINE MIR -27 235 90 2103 222 100 19 chr11 46680561 46681182 -102102290 - L1MC4 LINE L1 0 8042 7372 888 266 150 27 chr11 46681445 46682031 -102101441 + L1M1 LINE L1 4543 5200 -2365 502 178 9 19 chr11 46682095 46682202 -102101270 - AluSc SINE Alu 0 309 204 288 0 0 0 chr11 46682373 46682405 -102101067 + (CA)n Simple_repeat Simple_repeat 2 33 0 2007 149 3 0 chr11 46682539 46682828 -102100644 - AluSx SINE Alu -17 295 6 1366 142 32 5 chr11 46683115 46683333 -102100139 + AluJb SINE Alu 84 307 -5 1004 243 149 19 chr11 46684117 46684492 -102098980 - MLT1L LTR MaLR -55 560 137 11922 133 27 30 chr11 46685058 46685601 -102097871 + L1MA1 LINE L1 3018 3561 -2741 2722 17 0 0 chr11 46685601 46685894 -102097578 + AluYa5 SINE Alu 1 293 -18 11922 133 27 30 chr11 46685894 46686166 -102097306 + L1MA1 LINE L1 3561 3832 -2470 1494 97 31 18 chr11 46686166 46686393 -102097079 + MER30 DNA MER1_type 1 230 0 11922 133 27 30 chr11 46686393 46688873 -102094599 + L1MA1 LINE L1 3832 6302 0 30 0 0 0 chr11 46688873 46688903 -102094569 + AT_rich Low_complexity Low_complexity 1 30 0 732 294 47 13 chr11 46688903 46689138 -102094334 + LTR16C LTR ERVL 107 349 -142 1245 67 51 6 chr11 46689138 46689316 -102094156 - L1M1 LINE L1 -820 5482 5297 555 178 136 0 chr11 46689322 46689440 -102094032 + LTR16C LTR ERVL 358 491 0 599 324 89 34 chr11 46690811 46691404 -102092068 + L2 LINE L2 2340 2965 -349 762 265 60 20 chr11 46691458 46691707 -102091765 + MIR SINE MIR 4 262 0 263 352 11 0 chr11 46691724 46691812 -102091660 + L2 LINE L2 2991 3079 -193 6382 99 18 3 chr11 46691900 46692806 -102090666 - L1PA8 LINE L1 0 6172 5254 300 321 12 0 chr11 46692812 46692896 -102090576 + L2 LINE L2 3175 3259 -13 2403 89 17 14 chr11 46692901 46693248 -102090224 + L1PA13 LINE L1 5810 6157 -6 204 40 0 0 chr11 46693398 46693423 -102090049 + (GAA)n Simple_repeat Simple_repeat 2 26 0 2197 117 3 0 chr11 46693507 46693798 -102089674 - AluSq SINE Alu -21 292 1 1313 157 0 48 chr11 46693973 46694202 -102089270 - AluSx SINE Alu -94 218 1 1677 171 45 0 chr11 46694390 46694676 -102088796 - AluJo SINE Alu -13 299 1 398 250 85 64 chr11 46694790 46694978 -102088494 + MIR SINE MIR 20 211 -51 307 248 128 34 chr11 46695957 46696074 -102087398 + MIR3 SINE MIR 74 201 -7 21 36 0 0 chr11 46696549 46696577 -102086895 + AT_rich Low_complexity Low_complexity 1 28 0 256 301 98 14 chr11 46697652 46697795 -102085677 + Charlie8 DNA MER1_type 3 157 -2260 262 145 129 16 chr11 46697878 46697940 -102085532 + Charlie8 DNA MER1_type 1360 1428 -989 512 202 118 0 chr11 46698269 46698388 -102085084 - MIR SINE MIR -107 155 23 834 147 0 22 chr11 46698553 46698689 -102084783 + FLAM_A SINE Alu 1 133 0 411 21 0 0 chr11 46698689 46698737 -102084735 + (TA)n Simple_repeat Simple_repeat 2 49 0 1113 237 142 39 chr11 46698760 46699246 -102084226 - L2 LINE L2 -1 3312 2720 2043 126 0 7 chr11 46699246 46699578 -102083894 + AluSx SINE Alu 1 330 0 1113 237 142 39 chr11 46699578 46699886 -102083586 - L2 LINE L2 -593 2720 2445 236 263 213 12 chr11 46700227 46700387 -102083085 - MIR SINE MIR -70 192 1 2132 132 0 0 chr11 46700869 46701165 -102082307 - AluSx SINE Alu -16 296 1 200 308 155 25 chr11 46701309 46701612 -102081860 + L2 LINE L2 2703 3039 -274 183 225 157 11 chr11 46702295 46702384 -102081088 - MIR SINE MIR 0 262 161 26 30 0 0 chr11 46703245 46703278 -102080194 + AT_rich Low_complexity Low_complexity 1 33 0 182 149 0 85 chr11 46703546 46703593 -102079879 + MIR SINE MIR 218 260 -2 320 272 142 12 chr11 46705259 46705428 -102078044 - MIR SINE MIR -37 225 35 248 245 92 10 chr11 46708823 46708921 -102074551 + MIR SINE MIR 38 143 -65 284 320 75 41 chr11 46709771 46709862 -102073610 - L1ME4a LINE L1 -56 6065 5979 1757 135 14 7 chr11 46709862 46710143 -102073329 - AluJb SINE Alu -29 283 1 284 320 75 41 chr11 46710143 46710370 -102073102 - L1ME4a LINE L1 -142 5979 5736 417 217 35 56 chr11 46710510 46710653 -102072819 - MIR SINE MIR -10 252 113 690 215 17 41 chr11 46710683 46710855 -102072617 - L1ME4a LINE L1 -430 5691 5524 307 188 156 5 chr11 46712109 46712205 -102071267 + MIR SINE MIR 41 145 -73 1764 161 3 58 chr11 46712305 46712490 -102070982 - AluJo SINE Alu -1 311 117 180 0 0 0 chr11 46712490 46712510 -102070962 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2150 114 7 0 chr11 46712513 46712802 -102070670 - AluSq SINE Alu -22 291 1 1764 161 3 58 chr11 46712802 46712941 -102070531 - AluJo SINE Alu -197 115 1 282 316 11 11 chr11 46713364 46713431 -102070041 + MIR3 SINE MIR 90 159 -49 2294 158 54 5 chr11 46713431 46713837 -102069635 + MSTB LTR MaLR 1 426 0 282 316 11 11 chr11 46713837 46713864 -102069608 + MIR3 SINE MIR 158 184 -24 252 86 0 0 chr11 46713903 46713938 -102069534 + (CA)n Simple_repeat Simple_repeat 1 35 0 503 264 66 30 chr11 46713938 46714105 -102069367 + MER112 DNA MER1_type 88 260 0 335 188 50 40 chr11 46714611 46714712 -102068760 + MIR SINE MIR 28 129 -133 2006 155 0 7 chr11 46715355 46715665 -102067807 - AluSx SINE Alu -4 308 1 245 267 27 13 chr11 46715996 46716071 -102067401 - MIR SINE MIR -71 137 62 272 209 12 0 chr11 46717154 46717240 -102066232 + CT-rich Low_complexity Low_complexity 1 87 0 231 167 0 0 chr11 46717559 46717601 -102065871 + (CA)n Simple_repeat Simple_repeat 1 42 0 271 339 25 8 chr11 46718212 46718333 -102065139 - MIR3 SINE MIR -4 204 82 225 320 56 65 chr11 46718503 46718734 -102064738 + MIR SINE MIR 22 250 -12 799 166 0 58 chr11 46718747 46718886 -102064586 - FLAM_A SINE Alu -2 131 1 220 245 0 0 chr11 46719495 46719544 -102063928 - MIR SINE MIR -10 252 204 222 314 0 0 chr11 46719715 46719766 -102063706 - MIR SINE MIR -113 95 45 264 278 107 60 chr11 46720289 46720523 -102062949 - L2 LINE L2 -31 3241 2997 * 317 241 60 17 chr11 46720497 46720613 -102062859 - MIR3 SINE MIR -73 135 15 259 260 164 3 chr11 46720603 46720856 -102062616 + L2 LINE L2 1985 2336 -978 * 493 301 82 35 chr11 46720882 46721220 -102062252 - MLT1J1 LTR MaLR -40 410 54 2158 123 7 0 chr11 46721616 46721924 -102061548 + AluSx SINE Alu 1 310 -2 545 293 79 53 chr11 46722614 46722709 -102060763 + L2 LINE L2 2369 2460 -854 2042 131 10 0 chr11 46722709 46722999 -102060473 - AluSx SINE Alu -17 295 3 545 293 79 53 chr11 46722999 46723221 -102060251 + L2 LINE L2 2460 2694 -620 240 35 0 0 chr11 46723222 46723251 -102060221 + (TTA)n Simple_repeat Simple_repeat 1 29 0 866 142 0 0 chr11 46723254 46723374 -102060098 - FLAM_C SINE Alu -23 120 1 535 252 163 58 chr11 46723375 46723453 -102060019 + L2 LINE L2 2686 2754 -559 2324 73 3 17 chr11 46723453 46723753 -102059719 - AluY SINE Alu -15 296 1 535 252 163 58 chr11 46723753 46723959 -102059513 + L2 LINE L2 2754 3001 -312 684 216 29 86 chr11 46723994 46724239 -102059233 + MIR SINE MIR 29 259 -3 263 288 144 18 chr11 46724405 46724516 -102058956 + L2 LINE L2 3144 3268 -4 608 249 155 19 chr11 46724755 46724968 -102058504 + MIR SINE MIR 21 262 0 384 22 0 0 chr11 46725125 46725170 -102058302 + (TG)n Simple_repeat Simple_repeat 1 45 0 24 0 0 0 chr11 46725551 46725575 -102057897 + GC_rich Low_complexity Low_complexity 1 24 0 22 103 0 0 chr11 46725770 46725848 -102057624 + GC_rich Low_complexity Low_complexity 1 78 0 29 70 0 0 chr11 46726004 46726061 -102057411 + GC_rich Low_complexity Low_complexity 1 57 0 303 324 149 31 chr11 46726094 46726316 -102057156 + L1M2 LINE L1 449 696 -6153 23 68 0 0 chr11 46726556 46726600 -102056872 + GC_rich Low_complexity Low_complexity 1 44 0 1958 134 6 16 chr11 46728831 46729145 -102054327 + AluJb SINE Alu 1 311 -1 2873 179 72 9 chr11 46729424 46730023 -102053449 - Charlie1a DNA MER1_type -772 683 2 298 232 14 0 chr11 46730023 46730092 -102053380 + L1MC4 LINE L1 7833 7902 -140 1981 141 7 0 chr11 46730394 46730698 -102052774 - AluSx SINE Alu -6 306 1 2232 114 0 0 chr11 46730911 46731208 -102052264 + AluSx SINE Alu 1 297 -15 222 37 0 0 chr11 46732142 46732169 -102051303 + (A)n Simple_repeat Simple_repeat 1 27 0 1095 199 6 6 chr11 46732247 46732423 -102051049 + MER45A DNA AcHobo 2 177 -1 534 181 38 45 chr11 46732800 46732933 -102050539 - L2 LINE L2 0 3313 3182 1543 160 66 4 chr11 46733133 46733389 -102050083 + AluJb SINE Alu 12 283 -29 607 165 79 24 chr11 46733456 46733620 -102049852 - MER104 DNA Tc2 -5 175 3 500 164 10 67 chr11 46733901 46734005 -102049467 - Tigger7 DNA MER2_type -1 2490 2393 947 165 63 0 chr11 46734006 46734164 -102049308 - Tigger7 DNA MER2_type -2222 265 98 2441 92 0 6 chr11 46734167 46734481 -102048991 + AluSq SINE Alu 1 312 -1 2327 117 0 0 chr11 46734707 46735016 -102048456 + AluSx SINE Alu 1 309 -3 862 161 0 0 chr11 46736146 46736276 -102047196 - FLAM_A SINE Alu 0 133 4 322 232 61 50 chr11 46736423 46736522 -102046950 - L2 LINE L2 0 3272 3173 447 304 136 0 chr11 46738065 46738249 -102045223 - LTR16A LTR ERVL -241 209 1 286 218 201 0 chr11 46738688 46738783 -102044689 - AluSc SINE Alu -118 181 110 240 259 133 32 chr11 46738979 46739137 -102044335 + MLT1L LTR MaLR 204 377 -238 913 252 97 43 chr11 46739207 46739694 -102043778 - L2 LINE L2 -71 3242 2727 309 239 114 0 chr11 46739694 46739782 -102043690 + AluJb SINE Alu 91 188 -114 302 333 75 13 chr11 46740884 46741043 -102042429 - MIR SINE MIR -71 191 23 898 142 116 0 chr11 46742136 46742291 -102041181 + MER2 DNA MER2_type 1 173 -172 317 264 28 0 chr11 46742403 46742475 -102040997 + MER2 DNA MER2_type 269 342 -3 553 156 85 35 chr11 46742563 46742704 -102040768 - MER106B DNA MER1_type -9 1050 903 216 0 0 0 chr11 46744244 46744268 -102039204 + (TTCA)n Simple_repeat Simple_repeat 4 27 0 2304 104 0 3 chr11 46744314 46744613 -102038859 + AluSx SINE Alu 1 298 -14 603 273 109 50 chr11 46744749 46745054 -102038418 - L2 LINE L2 -700 2614 2274 486 88 0 0 chr11 46745054 46745122 -102038350 + (TA)n Simple_repeat Simple_repeat 2 69 0 603 273 109 50 chr11 46745122 46745255 -102038217 - L2 LINE L2 -1040 2274 2150 1493 165 18 48 chr11 46745341 46745436 -102038036 - MER33 DNA MER1_type -2261 324 228 2439 75 0 10 chr11 46745436 46745744 -102037728 - AluY SINE Alu -6 305 1 1493 165 18 48 chr11 46745744 46745981 -102037491 - MER33 DNA MER1_type -2357 228 2 1079 200 47 28 chr11 46746067 46746282 -102037190 + MER20 DNA MER1_type 1 219 0 1546 269 49 65 chr11 46749191 46749782 -102033690 - MER21B LTR ERV1 -156 707 127 3632 147 51 12 chr11 46749782 46750429 -102033043 + L1MA4 LINE L1 5629 6300 0 1546 269 49 65 chr11 46750429 46750496 -102032976 - MER21B LTR ERV1 -736 127 60 634 363 62 11 chr11 46750699 46751195 -102032277 - L2 LINE L2 -219 3094 2569 435 235 151 24 chr11 46751319 46751485 -102031987 - MIR SINE MIR -8 254 68 288 320 70 19 chr11 46751485 46751641 -102031831 - L2 LINE L2 -856 2458 2295 203 214 0 0 chr11 46752420 46752462 -102031010 + L2 LINE L2 3229 3270 -2 350 286 197 26 chr11 46752491 46752695 -102030777 - MIR SINE MIR -12 250 14 2257 78 7 3 chr11 46752821 46753138 -102030334 + AluSp SINE Alu 1 318 0 324 0 0 0 chr11 46753652 46753688 -102029784 + (TA)n Simple_repeat Simple_repeat 1 36 0 6991 118 12 4 chr11 46754862 46756003 -102027469 - L1MA4A LINE L1 0 6303 5153 2305 97 0 0 chr11 46756123 46756422 -102027050 - AluY SINE Alu -11 300 2 725 234 51 0 chr11 46757494 46757669 -102025803 + MIR SINE MIR 7 190 -72 280 314 152 33 chr11 46758017 46758227 -102025245 + L2 LINE L2 3038 3272 0 228 321 92 0 chr11 46758500 46758609 -102024863 - L2 LINE L2 -212 3060 2942 438 318 90 10 chr11 46758834 46759035 -102024437 + MIR SINE MIR 7 223 -39 29 0 0 0 chr11 46759876 46759905 -102023567 + AT_rich Low_complexity Low_complexity 1 29 0 2703 101 8 0 chr11 46759905 46760271 -102023201 - L1PB1 LINE L1 -1 6150 5782 342 127 0 0 chr11 46760271 46760342 -102023130 + (TA)n Simple_repeat Simple_repeat 1 71 0 4374 180 5 4 chr11 46760343 46761322 -102022150 - L1PB1 LINE L1 -714 5437 4458 251 235 20 0 chr11 46761337 46761388 -102022084 - L2 LINE L2 -20 3252 3201 217 411 0 0 chr11 46763459 46763549 -102019923 - L2 LINE L2 -529 2785 2696 325 346 31 31 chr11 46764853 46765015 -102018457 + L3 LINE CR1 35 196 -1381 5460 45 2 0 chr11 46765618 46766239 -102017233 - L1PA5 LINE L1 -6 6148 5527 35 24 0 0 chr11 46766297 46766339 -102017133 + AT_rich Low_complexity Low_complexity 1 42 0 1985 158 0 22 chr11 46766532 46766848 -102016624 - AluJo SINE Alu -1 311 3 248 293 103 0 chr11 46766882 46766998 -102016474 + L2 LINE L2 3174 3301 -12 248 316 194 0 chr11 46767092 46767231 -102016241 + L3 LINE CR1 1277 1442 -135 834 224 117 75 chr11 46767234 46767542 -102015930 + MER102a DNA MER1_type 1 321 -9 1857 199 12 12 chr11 46767646 46767988 -102015484 - MLT1A1 LTR MaLR 0 365 24 1009 104 8 0 chr11 46767993 46768127 -102015345 + AluJb SINE Alu 1 135 -177 1942 152 0 0 chr11 46768127 46768423 -102015049 + AluJb SINE Alu 1 296 -16 2671 45 0 3 chr11 46769350 46769661 -102013811 - AluY SINE Alu -1 310 1 2781 10 3 0 chr11 46771416 46771718 -102011754 - AluYa5 SINE Alu -8 303 1 763 161 7 14 chr11 46774564 46774707 -102008765 - L1MB8 LINE L1 -2 6176 6035 24 53 0 0 chr11 46774715 46774753 -102008719 + AT_rich Low_complexity Low_complexity 1 38 0 5317 156 31 19 chr11 46778581 46779769 -102003703 - L1MB3 LINE L1 -1 6182 4975 575 293 121 17 chr11 46780078 46780310 -102003162 - MIR SINE MIR 0 262 7 286 286 114 29 chr11 46781616 46781756 -102001716 + L2 LINE L2 2686 2837 -477 1767 235 98 65 chr11 46782989 46783195 -102000277 - L1MD3 LINE L1 0 8039 7841 1677 170 37 0 chr11 46783195 46783497 -101999975 - AluJb SINE Alu 0 312 1 1767 235 98 65 chr11 46783497 46784102 -101999370 - L1MD3 LINE L1 -198 7841 7206 313 390 0 7 chr11 46784268 46784404 -101999068 + MIR3 SINE MIR 11 145 -63 1897 149 10 3 chr11 46784596 46784892 -101998580 + AluSx SINE Alu 2 299 -13 257 311 75 9 chr11 46784920 46785026 -101998446 - L2 LINE L2 -4 3268 3156 194 219 59 101 chr11 46785142 46785311 -101998161 - L2 LINE L2 -80 3233 3072 2006 139 0 29 chr11 46785634 46785950 -101997522 + AluJo SINE Alu 2 308 -4 532 295 33 15 chr11 46786797 46787002 -101996470 - MIR SINE MIR -55 207 2 * 963 267 95 62 chr11 46787002 46787231 -101996241 + L2 LINE L2 2470 2690 -623 1773 145 11 11 chr11 46787231 46787536 -101995936 + AluJb SINE Alu 1 305 0 963 267 95 62 chr11 46787536 46788110 -101995362 + L2 LINE L2 2690 3310 -3 2160 82 7 0 chr11 46788991 46789273 -101994199 + AluSx SINE Alu 1 284 -28 27 29 0 0 chr11 46789294 46789328 -101994144 + AT_rich Low_complexity Low_complexity 1 34 0 354 248 143 9 chr11 46789898 46790003 -101993469 - L2 LINE L2 -4 3309 3191 212 389 130 4 chr11 46790026 46790265 -101993207 + L2 LINE L2 2810 3078 -194 2234 85 10 7 chr11 46791267 46791574 -101991898 + AluY SINE Alu 1 308 -3 1750 147 19 25 chr11 46791715 46792029 -101991443 + AluJb SINE Alu 1 312 0 303 71 0 0 chr11 46794915 46794957 -101988515 + (TTGG)n Simple_repeat Simple_repeat 2 43 0 1526 171 10 41 chr11 46795049 46795342 -101988130 + AluJo SINE Alu 1 284 -28 1794 158 31 0 chr11 46796324 46796615 -101986857 + AluJo SINE Alu 2 301 -11 1061 181 275 3 chr11 46796629 46796916 -101986556 - MLT1A1 LTR MaLR 0 365 1 1967 112 14 0 chr11 46797176 46797484 -101985988 - AluSx SINE Alu 0 312 1 1960 242 93 37 chr11 46797501 46798304 -101985168 - L1M4 LINE L1 -2013 4133 3286 1798 130 12 23 chr11 46798312 46798651 -101984821 + MER61B LTR ERV1 1 425 0 3190 227 86 16 chr11 46798659 46799703 -101983769 - L1M4 LINE L1 -2889 3257 2141 322 244 37 12 chr11 46799851 46799933 -101983539 + L2 LINE L2 3172 3255 -17 290 287 0 50 chr11 46799974 46800075 -101983397 - MIR SINE MIR -59 149 54 348 24 0 0 chr11 46800280 46800321 -101983151 + (TG)n Simple_repeat Simple_repeat 2 42 0 1692 167 9 41 chr11 46800323 46800511 -101982961 - AluJo SINE Alu -4 308 133 2276 103 3 0 chr11 46800511 46800813 -101982659 + AluSg SINE Alu 1 303 -7 1692 167 9 41 chr11 46800813 46800942 -101982530 - AluJo SINE Alu -179 133 1 3143 136 75 22 chr11 46800968 46801505 -101981967 + MER34B LTR ERV1 1 565 0 430 233 37 61 chr11 46802579 46802742 -101980730 - MIR SINE MIR -1 261 103 345 322 97 70 chr11 46803910 46804031 -101979441 + MIR SINE MIR 30 161 -101 1816 179 0 22 chr11 46804031 46804349 -101979123 + AluJb SINE Alu 1 311 -1 345 322 97 70 chr11 46804349 46804454 -101979018 + MIR SINE MIR 161 262 0 791 245 25 33 chr11 46804565 46804810 -101978662 - L2 LINE L2 -75 3238 2996 1177 199 113 117 chr11 46804811 46804926 -101978546 - MLT1F1 LTR MaLR 0 567 453 2256 98 20 0 chr11 46804926 46805232 -101978240 - AluSx SINE Alu 0 312 1 1177 199 113 117 chr11 46805232 46805613 -101977859 - MLT1F1 LTR MaLR -114 453 73 1179 298 52 28 chr11 46805649 46806144 -101977328 - L2 LINE L2 -313 3000 2495 1061 95 0 0 chr11 46807032 46807169 -101976303 + AluSg/x SINE Alu 166 302 -10 2813 132 43 0 chr11 46807176 46807617 -101975855 + MER41B LTR ERV1 175 634 -1 2379 173 103 55 chr11 46807850 46808200 -101975272 - LTR9 LTR ERV1 -1 611 220 2396 96 3 3 chr11 46808200 46808513 -101974959 - AluSp SINE Alu 0 313 1 2379 173 103 55 chr11 46808513 46808745 -101974727 - LTR9 LTR ERV1 -392 220 1 281 245 28 47 chr11 46808783 46808887 -101974585 + MLT1J2 LTR MaLR 9 110 -340 635 221 8 0 chr11 46808887 46809014 -101974458 - MLT1A1 LTR MaLR 0 365 238 2303 126 62 72 chr11 46809020 46809577 -101973895 - LTR8A LTR ERV1 0 727 166 2251 151 17 50 chr11 46809577 46809994 -101973478 - MER57A LTR ERV1 0 403 1 2303 126 62 72 chr11 46809994 46810055 -101973417 - LTR8A LTR ERV1 -561 166 106 2219 109 0 3 chr11 46810055 46810348 -101973124 - AluSg SINE Alu -18 292 1 2303 126 62 72 chr11 46810348 46810373 -101973099 - LTR8A LTR ERV1 -621 106 1 1639 138 58 43 chr11 46810373 46810695 -101972777 - LTR59 LTR ERV1 -9 588 262 6044 87 11 44 chr11 46810695 46811552 -101971920 - MER4D LTR ERV1 0 872 45 3082 166 78 51 chr11 46811552 46812259 -101971213 + LTR8A LTR ERV1 2 727 0 6044 87 11 44 chr11 46812259 46812303 -101971169 - MER4D LTR ERV1 -827 45 1 1234 150 167 0 chr11 46812303 46812530 -101970942 - LTR59 LTR ERV1 -332 265 1 705 181 37 141 chr11 46812530 46812800 -101970672 - MLT1A1 LTR MaLR -123 242 1 340 274 86 98 chr11 46813933 46814018 -101969454 - L1MEd LINE L1 -3104 3025 2940 2121 128 14 0 chr11 46814018 46814315 -101969157 - AluSx SINE Alu -11 301 1 340 274 86 98 chr11 46814315 46814432 -101969040 - L1MEd LINE L1 -3189 2940 2823 2179 103 3 25 chr11 46814432 46814751 -101968721 - AluSq SINE Alu -1 312 1 340 274 86 98 chr11 46814751 46814872 -101968600 - L1MEd LINE L1 -3306 2823 2705 26 0 0 0 chr11 46814919 46814945 -101968527 + AT_rich Low_complexity Low_complexity 1 26 0 482 308 43 25 chr11 46814957 46815170 -101968302 + MLT1J2 LTR MaLR 1 257 -254 229 151 75 57 chr11 46815262 46815315 -101968157 + MLT1J LTR MaLR 394 447 -64 480 115 21 10 chr11 46815332 46815386 -101968086 + CT-rich Low_complexity Low_complexity 2 59 -39 2368 95 119 0 chr11 46815386 46815723 -101967749 + MER51B LTR ERV1 1 377 0 480 115 21 10 chr11 46815723 46815764 -101967708 + CT-rich Low_complexity Low_complexity 59 98 0 254 200 0 20 chr11 46816878 46816928 -101966544 + MLT1J LTR MaLR 1 49 -462 295 287 75 30 chr11 46817435 46817703 -101965769 - L1MEd LINE L1 -3680 2449 2170 354 232 0 0 chr11 46817725 46817794 -101965678 + L1M4 LINE L1 3458 3526 -2620 2200 100 23 0 chr11 46817797 46818096 -101965376 + AluY SINE Alu 1 306 -5 8317 189 20 31 chr11 46818138 46819778 -101963694 + L1M4 LINE L1 3536 5154 -1006 2334 118 0 0 chr11 46819778 46820084 -101963388 + AluSx SINE Alu 1 306 -6 8317 189 20 31 chr11 46820084 46820315 -101963157 + L1M4 LINE L1 5154 5386 -774 250 279 188 29 chr11 46820327 46820635 -101962837 - HAL1b LINE L1 -898 450 94 2539 86 0 3 chr11 46820802 46821116 -101962356 - AluSq SINE Alu 0 313 1 1504 123 9 14 chr11 46821642 46821862 -101961610 + MER20B DNA MER1_type 1 219 0 234 371 9 17 chr11 46822238 46822354 -101961118 - L1MEd LINE L1 -5569 550 436 316 301 77 86 chr11 46822405 46822705 -101960767 - L1MEd LINE L1 -5740 379 81 1915 133 0 54 chr11 46822705 46823020 -101960452 + AluJb SINE Alu 2 299 -13 316 301 77 86 chr11 46823020 46823044 -101960428 - L1MEd LINE L1 -6038 81 58 370 295 9 0 chr11 46823051 46823156 -101960316 + MIR SINE MIR 132 237 -25 838 169 7 7 chr11 46823672 46823814 -101959658 + AluJo SINE Alu 1 142 -170 1924 164 7 0 chr11 46823848 46824141 -101959331 - AluJb SINE Alu -17 295 1 1027 236 31 37 chr11 46824147 46824473 -101958999 - L1MC4 LINE L1 -758 7284 6961 294 269 30 0 chr11 46824502 46824569 -101958903 + L2 LINE L2 3208 3276 -37 202 294 24 24 chr11 46824591 46824676 -101958796 + MIR SINE MIR 132 216 -46 1574 127 0 9 chr11 46824688 46824908 -101958564 + AluSx SINE Alu 1 218 -94 210 71 0 0 chr11 46824924 46824952 -101958520 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 1060 237 44 4 chr11 46824963 46825212 -101958260 - MIR SINE MIR -2 260 2 387 344 80 40 chr11 46825603 46825754 -101957718 + L2 LINE L2 3116 3272 0 217 281 57 54 chr11 46825787 46825926 -101957546 - MIR SINE MIR -72 190 49 748 179 0 0 chr11 46826500 46826617 -101956855 + FLAM_C SINE Alu 1 117 -16 282 277 81 68 chr11 46826652 46826800 -101956672 + MER5A DNA MER1_type 40 189 0 405 0 0 0 chr11 46827050 46827095 -101956377 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 493 238 10 10 chr11 46827643 46827744 -101955728 + L2 LINE L2 3210 3310 -3 963 210 88 48 chr11 46827869 46828164 -101955308 - MLT1C LTR MaLR -102 365 59 1310 207 87 5 chr11 46828226 46828623 -101954849 + MLT1F LTR MaLR 9 531 -11 583 235 45 35 chr11 46828634 46828834 -101954638 + MLT1F-int LTR MaLR 1 202 -1169 742 291 45 103 chr11 46829178 46829548 -101953924 + MLT1F-int LTR MaLR 699 1008 -363 198 0 0 0 chr11 46829548 46829570 -101953902 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 742 291 45 103 chr11 46829570 46829914 -101953558 + MLT1F-int LTR MaLR 1008 1371 0 266 309 12 0 chr11 46829914 46829995 -101953477 + MLT1F LTR MaLR 1 82 -460 718 260 130 23 chr11 46830103 46830487 -101952985 - MLT1J1 LTR MaLR -1 445 21 2380 165 39 53 chr11 46830820 46831328 -101952144 + MLT1D LTR MaLR 2 502 -3 677 183 8 16 chr11 46831410 46831536 -101951936 + MIR SINE MIR 34 158 -104 2340 108 3 3 chr11 46831635 46831941 -101951531 - AluSx SINE Alu -6 306 1 306 0 0 0 chr11 46832415 46832449 -101951023 + (T)n Simple_repeat Simple_repeat 1 34 0 1308 157 51 5 chr11 46832780 46832996 -101950476 + AluJo SINE Alu 87 312 0 307 293 79 63 chr11 46833282 46833309 -101950163 - L1MC4a LINE L1 -5 6116 6091 1550 114 0 0 chr11 46833309 46833511 -101949961 + AluSg/x SINE Alu 111 312 0 307 293 79 63 chr11 46833511 46833913 -101949559 - L1MC4a LINE L1 -30 6091 5680 256 262 60 34 chr11 46834113 46834351 -101949121 - L1P5 LINE L1 -711 5440 5197 577 287 84 20 chr11 46834380 46834582 -101948890 - MIR SINE MIR -3 259 45 870 263 86 14 chr11 46834623 46834729 -101948743 - LTR16C LTR ERVL -8 483 386 243 0 0 0 chr11 46834729 46834756 -101948716 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 870 263 86 14 chr11 46834756 46835010 -101948462 - LTR16C LTR ERVL -105 386 97 2046 88 15 0 chr11 46835863 46836125 -101947347 - AluSx SINE Alu -12 300 35 243 289 40 0 chr11 46836322 46836398 -101947074 + MIR SINE MIR 33 111 -97 292 209 79 22 chr11 46836399 46836538 -101946934 - LTR16A LTR ERVL -3 447 301 241 200 22 0 chr11 46836992 46837037 -101946435 - L2 LINE L2 -4 3309 3264 331 329 56 37 chr11 46837404 46837465 -101946007 + MIR SINE MIR 99 157 -105 2264 108 0 3 chr11 46837465 46837762 -101945710 + AluSx SINE Alu 1 296 -16 331 329 56 37 chr11 46837762 46837861 -101945611 + MIR SINE MIR 157 262 0 275 306 51 20 chr11 46839201 46839299 -101944173 - L2 LINE L2 -46 3226 3126 301 137 20 0 chr11 46839353 46839404 -101944068 + L2 LINE L2 2283 2334 -980 324 85 83 12 chr11 46839404 46839633 -101943839 + AluSq SINE Alu 1 320 0 752 278 140 52 chr11 46839638 46840525 -101942947 + L2 LINE L2 2325 3311 -2 224 200 0 0 chr11 46840799 46840839 -101942633 + (TCCA)n Simple_repeat Simple_repeat 1 40 0 448 290 0 62 chr11 46840863 46841025 -101942447 + MIR3 SINE MIR 30 181 -27 693 162 111 0 chr11 46842448 46842565 -101940907 - FLAM_A SINE Alu 0 133 4 521 170 62 36 chr11 46842806 46842918 -101940554 + MIR3 SINE MIR 49 163 -45 198 288 14 0 chr11 46843612 46843685 -101939787 + L2 LINE L2 2423 2496 -818 730 266 56 47 chr11 46843687 46843878 -101939594 + MIR SINE MIR 28 223 -39 1756 168 53 34 chr11 46843878 46844235 -101939237 - MLT1A1 LTR MaLR 0 365 2 730 266 56 47 chr11 46844235 46844276 -101939196 + MIR SINE MIR 223 262 0 2087 139 3 0 chr11 46844429 46844723 -101938749 + AluSx SINE Alu 7 301 -11 555 188 134 0 chr11 46844763 46844875 -101938597 - L2 LINE L2 0 3313 3187 330 306 90 15 chr11 46844847 46844981 -101938491 + MIR SINE MIR 27 170 -92 * 2200 125 3 0 chr11 46845145 46845448 -101938024 + AluSx SINE Alu 1 304 -8 192 152 0 0 chr11 46845638 46845671 -101937801 + T-rich Low_complexity Low_complexity 1 33 0 2140 111 23 7 chr11 46845673 46845980 -101937492 - AluJo SINE Alu 0 312 1 217 296 99 0 chr11 46846147 46846218 -101937254 + L2 LINE L2 3170 3247 -25 587 272 89 29 chr11 46846395 46846711 -101936761 - MLT1J2 LTR MaLR -1 445 104 368 224 37 19 chr11 46847425 46847532 -101935940 + MER20B DNA MER1_type 30 138 -645 544 179 86 8 chr11 46847610 46847727 -101935745 - MER5A DNA MER1_type -63 126 1 1408 254 61 30 chr11 46847735 46848140 -101935332 + MER20B DNA MER1_type 227 618 -165 254 73 24 0 chr11 46848140 46848181 -101935291 + (TG)n Simple_repeat Simple_repeat 1 42 0 1408 254 61 30 chr11 46848181 46848260 -101935212 + MER20B DNA MER1_type 618 693 -90 2016 126 3 7 chr11 46848260 46848567 -101934905 - AluJb SINE Alu 0 306 1 1408 254 61 30 chr11 46848567 46848620 -101934852 + MER20B DNA MER1_type 693 783 0 301 311 19 10 chr11 46848842 46848945 -101934527 - MIR SINE MIR -130 132 29 292 282 13 0 chr11 46849046 46849124 -101934348 - L2 LINE L2 -56 3257 3179 445 330 214 7 chr11 46849349 46849470 -101934002 - L2 LINE L2 -417 2897 2802 1711 197 89 21 chr11 46849470 46849907 -101933565 + MLT1C LTR MaLR 1 467 0 445 330 214 7 chr11 46849907 46850337 -101933135 - L2 LINE L2 -512 2802 2232 2042 146 17 0 chr11 46850439 46850741 -101932731 - AluSx SINE Alu -5 307 1 543 194 8 47 chr11 46850742 46850871 -101932601 + MER5B DNA MER1_type 5 128 -50 283 179 189 28 chr11 46850898 46851004 -101932468 - HAL1 LINE L1 -1747 760 638 866 255 20 8 chr11 46851010 46851257 -101932215 - HAL1 LINE L1 -2232 275 26 225 224 52 0 chr11 46851324 46851382 -101932090 - MLT1L LTR MaLR -3 612 552 809 262 53 12 chr11 46851616 46851860 -101931612 + MIR SINE MIR 2 255 -7 325 112 31 41 chr11 46852289 46852387 -101931085 + (TTCA)n Simple_repeat Simple_repeat 3 99 0 1246 182 5 5 chr11 46852398 46852607 -101930865 - AluJb SINE Alu -17 295 87 631 226 136 35 chr11 46852613 46852812 -101930660 + MIR SINE MIR 29 247 -15 297 269 0 0 chr11 46852810 46852877 -101930595 - MIR SINE MIR 0 262 196 * 1400 211 109 24 chr11 46852884 46853396 -101930076 - MLT1E LTR MaLR 0 593 2 581 144 215 67 chr11 46853435 46853630 -101929842 - MER2 DNA MER2_type -1 344 121 724 161 0 8 chr11 46853631 46853749 -101929723 + AluJb SINE Alu 2 118 -194 2447 94 3 0 chr11 46853749 46854057 -101929415 - AluSx SINE Alu -3 309 1 617 130 0 0 chr11 46854095 46854187 -101929285 + AluSg/x SINE Alu 216 307 -2 356 211 0 67 chr11 46854292 46854411 -101929061 + AluSg/x SINE Alu 219 302 0 * 807 159 15 0 chr11 46854408 46854540 -101928932 - MER2 DNA MER2_type -210 135 2 385 263 254 0 chr11 46854550 46854664 -101928808 - MIR SINE MIR -118 144 2 422 338 71 7 chr11 46854704 46854858 -101928614 - L2 LINE L2 -18 3254 3091 495 0 0 0 chr11 46855409 46855464 -101928008 + (TG)n Simple_repeat Simple_repeat 2 56 0 480 242 47 47 chr11 46856339 46856488 -101926984 + MIR SINE MIR 80 228 -34 840 190 0 60 chr11 46856914 46857004 -101926468 - L1MB3 LINE L1 -2 6181 6108 2130 115 35 0 chr11 46857004 46857290 -101926182 + AluSx SINE Alu 1 296 -16 840 190 0 60 chr11 46857290 46857399 -101926073 - L1MB3 LINE L1 -75 6108 5994 216 0 0 0 chr11 46858109 46858133 -101925339 + (AGCTG)n Simple_repeat Simple_repeat 2 25 0 208 317 0 0 chr11 46858241 46858301 -101925171 - MIR SINE MIR -79 129 70 474 250 175 12 chr11 46858356 46858516 -101924956 + MER5A DNA MER1_type 4 189 0 244 260 14 14 chr11 46859275 46859348 -101924124 - MER81 DNA DNA -7 107 35 566 228 39 44 chr11 46859385 46859565 -101923907 - MIR SINE MIR -57 205 27 335 300 124 43 chr11 46860020 46860133 -101923339 + MIR SINE MIR 36 138 -124 2272 123 3 0 chr11 46860133 46860434 -101923038 - AluSx SINE Alu -8 304 3 335 300 124 43 chr11 46860434 46860530 -101922942 + MIR SINE MIR 138 262 0 444 274 13 93 chr11 46861259 46861485 -101921987 + MIR SINE MIR 54 261 -1 208 240 192 29 chr11 46862076 46862180 -101921292 + MIR3 SINE MIR 39 159 -49 520 293 61 0 chr11 46862181 46862345 -101921127 + MIR SINE MIR 1 174 -88 479 290 148 0 chr11 46862374 46862536 -101920936 - MIR SINE MIR -11 251 66 1807 157 0 4 chr11 46862536 46862816 -101920656 + AluJb SINE Alu 21 299 -13 2099 145 3 0 chr11 46863115 46863419 -101920053 + AluJb SINE Alu 1 305 -7 2357 86 7 0 chr11 46863690 46863980 -101919492 + AluSp SINE Alu 1 292 -21 374 218 64 0 chr11 46863988 46864066 -101919406 - L2 LINE L2 -1 3312 3230 200 347 8 40 chr11 46864750 46864874 -101918598 + L2 LINE L2 2521 2640 -674 346 311 44 50 chr11 46864928 46865108 -101918364 + L2 LINE L2 3120 3298 -15 243 234 0 0 chr11 46865175 46865222 -101918250 + L2 LINE L2 3267 3313 0 192 163 0 0 chr11 46865401 46865444 -101918028 + (TG)n Simple_repeat Simple_repeat 1 43 0 850 264 25 29 chr11 46865840 46865921 -101917551 + L1MC4a LINE L1 5482 5562 -559 2344 101 0 0 chr11 46865921 46866218 -101917254 - AluSq SINE Alu -16 297 1 850 264 25 29 chr11 46866218 46866467 -101917005 + L1MC4a LINE L1 5562 5806 -315 256 292 14 0 chr11 46866490 46866562 -101916910 + L2 LINE L2 2026 2098 -1216 365 161 0 0 chr11 46866562 46866624 -101916848 + MER20 DNA MER1_type 158 219 0 259 274 0 0 chr11 46866626 46866730 -101916742 + L2 LINE L2 3215 3312 -1 305 266 166 0 chr11 46866732 46866871 -101916601 + L1MC4a LINE L1 5813 5974 -1834 2037 119 0 56 chr11 46866905 46867224 -101916248 - AluSx SINE Alu -11 301 1 191 360 16 40 chr11 46867565 46867690 -101915782 - MIR SINE MIR -68 194 73 1364 204 49 120 chr11 46867748 46868322 -101915150 - MLT1F LTR MaLR -6 536 4 334 281 94 106 chr11 46868780 46869015 -101914457 - MIR SINE MIR -11 251 20 494 277 178 15 chr11 46869351 46869553 -101913919 + MIR SINE MIR 2 236 -26 316 234 198 27 chr11 46870467 46870578 -101912894 + MIR3 SINE MIR 71 200 -8 466 296 29 71 chr11 46870684 46870924 -101912548 - L2 LINE L2 -91 3181 2952 439 225 124 39 chr11 46870937 46871066 -101912406 + MER91C DNA MER1_type 1 140 0 447 278 77 18 chr11 46871237 46871406 -101912066 + MIR SINE MIR 34 212 -50 306 53 53 35 chr11 46872275 46872332 -101911140 - L1MB7 LINE L1 0 6184 6127 706 198 0 0 chr11 46872332 46872458 -101911014 + FLAM_C SINE Alu 18 143 0 4283 178 62 14 chr11 46872462 46874260 -101909212 - L1MB7 LINE L1 -43 6639 4337 6324 153 12 3 chr11 46874262 46876263 -101907209 - L1PB1 LINE L1 0 6151 4134 6235 221 55 31 chr11 46876230 46876665 -101906807 - L1MB7 LINE L1 -2259 4385 3962 * 1761 161 3 25 chr11 46876665 46876982 -101906490 - AluJb SINE Alu -2 310 1 6235 221 55 31 chr11 46876982 46877603 -101905869 - L1MB7 LINE L1 -2682 3962 3358 2386 167 101 29 chr11 46877603 46878041 -101905431 + MLT2B1 LTR ERVL 1 406 -114 258 32 0 0 chr11 46878041 46878072 -101905400 + (TC)n Simple_repeat Simple_repeat 2 32 0 * 369 0 0 0 chr11 46878071 46878112 -101905360 + (TG)n Simple_repeat Simple_repeat 2 42 0 2386 167 101 29 chr11 46878072 46878158 -101905314 + MLT2B1 LTR ERVL 406 520 0 6235 221 55 31 chr11 46878158 46880362 -101903110 - L1MB7 LINE L1 -3286 3358 916 2220 92 7 0 chr11 46880362 46880655 -101902817 - AluSp SINE Alu -18 295 1 6235 221 55 31 chr11 46880655 46881051 -101902421 - L1MB7 LINE L1 -5728 916 531 279 259 84 53 chr11 46881051 46881182 -101902290 + MIR SINE MIR 122 256 -6 207 319 176 22 chr11 46881241 46881332 -101902140 - MIR SINE MIR -87 121 17 1524 188 20 24 chr11 46881510 46881803 -101901669 + AluJo SINE Alu 1 292 -20 831 190 147 11 chr11 46881976 46882160 -101901312 + MER3 DNA MER1_type 1 209 0 337 215 29 147 chr11 46882236 46882464 -101901008 + MIR SINE MIR 4 200 -41 945 251 171 16 chr11 46882590 46883066 -101900406 + L2 LINE L2 2510 3053 -260 346 224 13 13 chr11 46883069 46883145 -101900327 + L2 LINE L2 3237 3312 -1 326 248 44 97 chr11 46883210 46883323 -101900149 + MIR3 SINE MIR 77 183 -25 594 0 0 0 chr11 46883597 46883663 -101899809 + (TTTTA)n Simple_repeat Simple_repeat 5 70 0 243 0 0 0 chr11 46883685 46883712 -101899760 + (T)n Simple_repeat Simple_repeat 1 27 0 389 320 14 14 chr11 46884495 46884642 -101898830 - MIR SINE MIR -69 193 47 568 284 49 0 chr11 46884678 46884840 -101898632 + MIR SINE MIR 50 219 -43 1393 270 47 7 chr11 46885147 46885555 -101897917 - LTR16B LTR ERVL -40 424 1 300 257 19 38 chr11 46885557 46885662 -101897810 + MIR SINE MIR 71 173 -89 532 226 98 9 chr11 46885674 46885867 -101897605 - MLT1H1 LTR MaLR -11 544 341 228 195 0 0 chr11 46886039 46886080 -101897392 - MLT1F LTR MaLR -480 62 22 309 173 10 164 chr11 46886834 46886938 -101896534 - MIR SINE MIR -123 139 52 199 288 62 25 chr11 46887871 46887951 -101895521 + MER5A DNA MER1_type 81 163 -26 2489 101 27 36 chr11 46888033 46888398 -101895074 - THE1B LTR MaLR -2 362 1 194 238 0 0 chr11 46888539 46888581 -101894891 + L2 LINE L2 2741 2782 -532 1091 250 148 21 chr11 46888611 46888983 -101894489 + L2 LINE L2 2895 3313 0 2120 129 0 0 chr11 46889283 46889593 -101893879 + AluSx SINE Alu 1 310 -2 362 248 108 51 chr11 46889923 46890080 -101893392 + MIR SINE MIR 17 182 -80 1957 140 0 0 chr11 46890129 46890429 -101893043 + AluSx SINE Alu 2 301 -11 279 228 109 40 chr11 46890874 46890975 -101892497 + MIR SINE MIR 48 155 -107 207 321 83 18 chr11 46891376 46891485 -101891987 - L2 LINE L2 -8 3305 3190 423 38 0 0 chr11 46891485 46891538 -101891934 + (TCCA)n Simple_repeat Simple_repeat 1 53 0 1134 260 26 68 chr11 46891549 46891976 -101891496 - L2 LINE L2 0 3313 2905 451 277 30 71 chr11 46892029 46892296 -101891176 - L2 LINE L2 -206 3066 2811 185 317 0 92 chr11 46892506 46892626 -101890846 - L2 LINE L2 -520 2794 2686 232 375 57 0 chr11 46892627 46892715 -101890757 + L2 LINE L2 3202 3294 -19 2534 96 0 6 chr11 46892938 46893291 -101890181 + L1PB1 LINE L1 5800 6150 -1 317 267 11 33 chr11 46893297 46893387 -101890085 + MER5A DNA MER1_type 63 150 -39 325 294 65 23 chr11 46893542 46893738 -101889734 - MIR SINE MIR -43 219 19 282 287 233 7 chr11 46893859 46894009 -101889463 + MER5A DNA MER1_type 2 185 -4 585 332 58 9 chr11 46894516 46894739 -101888733 + MIR SINE MIR 19 252 -10 204 146 164 18 chr11 46894878 46894933 -101888539 + MIR SINE MIR 129 191 -71 329 289 21 21 chr11 46894995 46895092 -101888380 - L1MEd LINE L1 -5097 1022 926 298 140 80 0 chr11 46895161 46895211 -101888261 - MER58A DNA MER1_type -17 90 37 1082 315 142 35 chr11 46895213 46896118 -101887354 - L1 LINE L1 -1845 4301 3287 670 189 47 0 chr11 46896118 46896245 -101887227 - FLAM_C SINE Alu 0 133 1 1082 315 142 35 chr11 46896245 46896299 -101887173 - L1 LINE L1 -2859 3287 3240 1803 160 0 7 chr11 46896427 46896720 -101886752 + AluJb SINE Alu 1 291 -21 433 290 107 0 chr11 46896780 46896949 -101886523 - L1ME1 LINE L1 -19 6147 5961 495 232 178 19 chr11 46896987 46897302 -101886170 - L1MEc LINE L1 -4785 1611 1247 23 0 0 0 chr11 46897485 46897508 -101885964 + AT_rich Low_complexity Low_complexity 1 23 0 257 219 186 1 chr11 46897887 46897965 -101885507 + MIR SINE MIR 43 132 -76 385 327 9 0 chr11 46897965 46898072 -101885400 - MIR SINE MIR -56 152 45 1820 148 0 7 chr11 46898790 46899080 -101884392 + AluJb SINE Alu 7 294 -18 379 234 0 0 chr11 46900581 46900678 -101882794 + AluJ/FRAM SINE Alu 219 315 0 729 210 14 0 chr11 46900692 46900830 -101882642 + MER5A DNA MER1_type 47 186 -3 1179 173 9 62 chr11 46901009 46901234 -101882238 - MER58A DNA MER1_type 0 224 12 237 319 156 22 chr11 46902223 46902358 -101881114 - MIR SINE MIR -31 231 79 198 301 89 8 chr11 46902610 46902733 -101880739 - L2 LINE L2 -310 2962 2830 2111 129 0 0 chr11 46902766 46903075 -101880397 + AluJb SINE Alu 1 309 -3 183 229 42 21 chr11 46903544 46903592 -101879880 + L3b LINE CR1 1372 1420 -163 2299 86 0 0 chr11 46904467 46904770 -101878702 - AluY SINE Alu -8 303 1 230 258 177 8 chr11 46904771 46904895 -101878577 + MIR3 SINE MIR 45 189 -19 1877 130 4 0 chr11 46907220 46907496 -101875976 + AluSx SINE Alu 11 287 -25 274 236 118 112 chr11 46907991 46908077 -101875395 + MIR SINE MIR 49 133 -129 2194 117 0 0 chr11 46908077 46908385 -101875087 - AluSg SINE Alu -2 308 1 274 236 118 112 chr11 46908385 46908476 -101874996 + MIR SINE MIR 133 227 -35 180 351 0 0 chr11 46909285 46909362 -101874110 - L2 LINE L2 -299 2973 2897 2012 120 7 0 chr11 46910181 46910481 -101872991 + AluSq SINE Alu 1 302 -11 506 232 176 0 chr11 46911084 46911209 -101872263 - MER5B DNA MER1_type -3 175 29 1831 141 0 0 chr11 46911519 46911796 -101871676 + AluSx SINE Alu 2 278 -34 190 29 57 29 chr11 46911815 46911850 -101871622 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 228 338 19 94 chr11 46912501 46912588 -101870884 - L2 LINE L2 -4 3268 3197 2209 95 7 3 chr11 46912588 46912893 -101870579 + AluSg SINE Alu 1 306 -4 228 338 19 94 chr11 46912893 46912965 -101870507 - L2 LINE L2 -75 3197 3121 188 308 0 0 chr11 46912959 46913011 -101870461 - L2 LINE L2 -500 2814 2763 * 335 234 13 13 chr11 46913027 46913104 -101870368 - L2 LINE L2 -3 3310 3234 1716 154 31 0 chr11 46914238 46914530 -101868942 + AluJo SINE Alu 2 302 -10 1071 167 282 11 chr11 46914544 46914831 -101868641 - MLT1A1 LTR MaLR 0 365 1 1874 112 14 0 chr11 46915091 46915402 -101868070 - AluSx SINE Alu 0 315 1 1875 241 95 35 chr11 46915419 46916219 -101867253 - L1M4 LINE L1 -2013 4133 3286 1822 130 12 23 chr11 46916227 46916566 -101866906 + MER61B LTR ERV1 1 425 0 3130 218 86 16 chr11 46916574 46917618 -101865854 - L1M4 LINE L1 -2889 3257 2141 334 263 30 20 chr11 46917766 46917865 -101865607 + L2 LINE L2 3172 3271 -1 295 287 0 50 chr11 46917889 46917990 -101865482 - MIR SINE MIR -59 149 54 222 37 0 0 chr11 46918195 46918222 -101865250 + (TG)n Simple_repeat Simple_repeat 2 28 0 1573 166 10 41 chr11 46918224 46918408 -101865064 - AluJo SINE Alu -8 304 133 2172 103 3 0 chr11 46918408 46918710 -101864762 + AluSg SINE Alu 1 303 -7 1573 166 10 41 chr11 46918710 46918839 -101864633 - AluJo SINE Alu -179 133 1 2936 138 75 19 chr11 46918865 46919400 -101864072 + MER34B LTR ERV1 1 565 0 459 233 37 61 chr11 46920474 46920637 -101862835 - MIR SINE MIR -1 261 103 193 220 0 60 chr11 46921021 46921071 -101862401 + L2 LINE L2 3258 3304 -9 362 317 97 70 chr11 46921805 46921926 -101861546 + MIR SINE MIR 30 161 -101 1719 179 0 22 chr11 46921926 46922244 -101861228 + AluJb SINE Alu 1 311 -1 362 317 97 70 chr11 46922244 46922349 -101861123 + MIR SINE MIR 161 262 0 811 246 24 32 chr11 46922452 46922705 -101860767 - L2 LINE L2 -67 3246 2996 1066 203 115 119 chr11 46922706 46922821 -101860651 - MLT1F1 LTR MaLR 0 567 453 2334 92 20 0 chr11 46922821 46923127 -101860345 - AluSx SINE Alu 0 312 1 1066 203 115 119 chr11 46923127 46923508 -101859964 - MLT1F1 LTR MaLR -114 453 73 1267 297 51 28 chr11 46923544 46924044 -101859428 - L2 LINE L2 -313 3000 2490 191 295 205 9 chr11 46924413 46924525 -101858947 - L2 LINE L2 0 3313 3180 374 255 39 0 chr11 46925027 46925129 -101858343 + MIR SINE MIR 30 135 -73 1838 205 35 7 chr11 46925196 46925620 -101857852 + MER63B DNA MER1_type 1 436 0 2287 93 0 0 chr11 46925759 46926082 -101857390 - AluSg SINE Alu 0 323 1 1371 140 108 7 chr11 46926148 46926426 -101857046 - MER33 DNA MER1_type -15 309 4 657 250 29 0 chr11 46926795 46926935 -101856537 + MIR3 SINE MIR 2 145 -63 940 199 16 0 chr11 46927160 46927351 -101856121 + MER20 DNA MER1_type 18 211 -8 207 235 78 0 chr11 46927580 46927631 -101855841 - MIR SINE MIR -2 260 206 432 300 112 60 chr11 46927684 46927917 -101855555 + MIR SINE MIR 7 251 -11 2063 121 4 0 chr11 46928361 46928813 -101854659 - AluSx SINE Alu 0 453 1 562 298 20 28 chr11 46929636 46929891 -101853581 - MLT1L LTR MaLR -362 253 1 791 234 60 5 chr11 46929981 46930182 -101853290 - MIR SINE MIR 0 262 51 473 304 6 25 chr11 46930252 46930410 -101853062 + MIR SINE MIR 106 260 -2 2796 93 3 3 chr11 46930427 46930791 -101852681 - THE1B LTR MaLR 0 364 1 262 346 59 33 chr11 46931809 46931962 -101851510 - MER5B DNA MER1_type -4 174 18 332 256 78 0 chr11 46932663 46932753 -101850719 - MIR SINE MIR 0 262 166 191 217 261 14 chr11 46932838 46932907 -101850565 - MIR SINE MIR -77 185 100 225 159 0 0 chr11 46933612 46933656 -101849816 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 871 161 0 0 chr11 46933797 46933927 -101849545 + FLAM_C SINE Alu 6 135 -8 286 259 56 84 chr11 46934015 46934158 -101849314 - MIR SINE MIR -48 214 76 * 489 271 0 8 chr11 46934153 46934275 -101849197 - L2 LINE L2 -2 3311 3191 389 224 6 0 chr11 46984417 46984578 -101798894 + (CACAA)n Simple_repeat Simple_repeat 4 165 0 203 157 20 0 chr11 46984591 46984642 -101798830 + (CAACC)n Simple_repeat Simple_repeat 3 54 0 974 199 16 21 chr11 46984696 46984887 -101798585 - AluJo SINE Alu -4 308 119 1677 174 3 16 chr11 46984891 46985195 -101798277 - AluJo SINE Alu -12 300 1 311 289 82 10 chr11 46985246 46985343 -101798129 + L2 LINE L2 3136 3239 -33 180 0 0 0 chr11 46985654 46985674 -101797798 + (T)n Simple_repeat Simple_repeat 1 20 0 1972 140 10 13 chr11 46986031 46986339 -101797133 - AluSx SINE Alu -5 307 1 2255 91 7 0 chr11 46986348 46986633 -101796839 - AluSx SINE Alu -19 293 7 202 216 0 0 chr11 46987134 46987171 -101796301 + (CA)n Simple_repeat Simple_repeat 1 37 0 466 270 90 17 chr11 46987390 46987568 -101795904 - MIR3 SINE MIR 0 208 18 731 174 149 31 chr11 46990220 46990381 -101793091 - MER5A DNA MER1_type 0 189 10 2312 306 78 63 chr11 46992311 46992947 -101790525 - HAL1 LINE L1 -274 2233 1608 2310 85 3 0 chr11 46992947 46993241 -101790231 + AluSx SINE Alu 1 295 -17 2312 306 78 63 chr11 46993241 46994390 -101789082 - HAL1 LINE L1 -899 1608 421 2602 181 109 76 chr11 46994706 46995519 -101787953 - L1MC4 LINE L1 -57 7985 7146 760 254 74 63 chr11 46995585 46996204 -101787268 - L1MEd LINE L1 -4890 1229 604 2362 53 0 0 chr11 46996597 46996901 -101786571 + AluY SINE Alu 1 304 0 904 281 44 51 chr11 46997114 46997548 -101785924 - L1MEd LINE L1 -5647 472 42 200 208 0 39 chr11 46998176 46998253 -101785219 + T-rich Low_complexity Low_complexity 1 74 0 273 262 56 65 chr11 46999143 46999250 -101784222 + MIR SINE MIR 81 186 -76 477 168 0 0 chr11 46999376 46999483 -101783989 + CT-rich Low_complexity Low_complexity 2 108 0 709 169 8 0 chr11 46999483 46999601 -101783871 - FRAM SINE Alu -64 112 1 1116 186 9 41 chr11 46999618 46999839 -101783633 - AluJo SINE Alu -59 253 40 288 282 141 13 chr11 46999843 46999992 -101783480 + MIR SINE MIR 94 261 -1 231 193 121 60 chr11 47000110 47000193 -101783279 - MIR SINE MIR -61 201 114 219 353 29 0 chr11 47000208 47000276 -101783196 - MIR3 SINE MIR -47 161 92 245 245 56 70 chr11 47000420 47000563 -101782909 + L1MEd LINE L1 300 440 -5976 237 338 0 0 chr11 47000932 47001006 -101782466 + L1MEd LINE L1 897 970 -5446 585 250 57 26 chr11 47001124 47001445 -101782027 + L1MEd LINE L1 1236 1554 -4862 2268 128 123 5 chr11 47001764 47002147 -101781325 - MSTA LTR MaLR 0 428 1 22 0 0 0 chr11 47004418 47004440 -101779032 + AT_rich Low_complexity Low_complexity 1 22 0 362 351 105 53 chr11 47004542 47004884 -101778588 + L2 LINE L2 2913 3272 0 565 271 90 0 chr11 47005010 47005176 -101778296 - MIR SINE MIR -32 230 50 530 282 82 24 chr11 47005766 47005972 -101777500 - MIR SINE MIR -13 249 32 862 275 50 5 chr11 47006927 47007145 -101776327 + MIR SINE MIR 32 259 -3 2365 89 10 0 chr11 47007544 47007846 -101775626 + AluSp SINE Alu 1 305 -8 490 138 0 0 chr11 47008227 47008314 -101775158 + L1MB3 LINE L1 6090 6176 -7 358 167 77 0 chr11 47008332 47008410 -101775062 + L1MB8 LINE L1 6093 6176 -2 556 212 69 84 chr11 47008633 47008968 -101774504 - HAL1 LINE L1 -1070 1437 1108 606 256 45 56 chr11 47009025 47009380 -101774092 - HAL1 LINE L1 -1412 1095 745 967 262 107 52 chr11 47009402 47009993 -101773479 - HAL1 LINE L1 -1884 623 1 25 0 0 0 chr11 47012532 47012557 -101770915 + AT_rich Low_complexity Low_complexity 1 25 0 341 246 138 23 chr11 47013790 47013920 -101769552 - MIR SINE MIR -37 225 81 557 286 111 9 chr11 47015064 47015281 -101768191 - MIR SINE MIR -4 258 20 417 363 51 34 chr11 47015344 47015578 -101767894 - L3 LINE CR1 -91 1486 1249 568 225 127 105 chr11 47015584 47016111 -101767361 - LTR41 LTR ERVL -6 767 218 225 0 0 0 chr11 47016111 47016136 -101767336 + (CCTG)n Simple_repeat Simple_repeat 4 28 0 568 225 127 105 chr11 47016136 47016359 -101767113 - LTR41 LTR ERVL -555 218 1 212 346 24 39 chr11 47016359 47016486 -101766986 - L3 LINE CR1 -376 1201 1077 923 243 25 13 chr11 47016497 47016736 -101766736 + Charlie1 DNA MER1_type 1 242 -2519 591 175 0 106 chr11 47016716 47016876 -101766596 + Charlie1 DNA MER1_type 2619 2761 0 * 1867 152 42 27 chr11 47016924 47017254 -101766218 + MER1B DNA MER1_type 3 337 0 557 266 130 31 chr11 47017451 47017643 -101765829 + MIR SINE MIR 38 248 -14 183 274 233 14 chr11 47017681 47017754 -101765718 - MIR SINE MIR -96 112 24 782 217 54 20 chr11 47017946 47018149 -101765323 + MER69 DNA AcHobo 41 250 -2276 223 93 47 0 chr11 47018939 47018982 -101764490 + (TATG)n Simple_repeat Simple_repeat 4 48 0 194 224 61 20 chr11 47020764 47020813 -101762659 + MIR3 SINE MIR 137 187 -21 397 322 105 1 chr11 47021043 47021242 -101762230 - MIR SINE MIR -25 237 18 439 326 155 0 chr11 47021388 47021569 -101761903 + MIR SINE MIR 31 239 -23 618 373 39 11 chr11 47022083 47022362 -101761110 + L2 LINE L2 2986 3272 0 1999 219 25 44 chr11 47022449 47023062 -101760410 + L1ME1 LINE L1 5555 6155 -11 1591 212 40 5 chr11 47023102 47023546 -101759926 + L1ME1 LINE L1 4388 4847 -1299 4300 139 28 5 chr11 47023546 47024293 -101759179 + L1MA7 LINE L1 5526 6289 -2 1488 207 102 50 chr11 47024346 47024390 -101759082 + L1ME1 LINE L1 5323 5363 -803 2020 125 0 4 chr11 47024390 47024670 -101758802 + AluSg SINE Alu 1 279 -31 460 48 0 0 chr11 47024670 47024732 -101758740 + (TAAA)n Simple_repeat Simple_repeat 1 164 0 1488 207 102 50 chr11 47024732 47025452 -101758020 + L1ME1 LINE L1 5363 6166 0 * 2259 201 73 18 chr11 47025449 47026285 -101757187 + L1MDa LINE L1 986 3590 -2950 593 186 8 8 chr11 47026488 47026612 -101756860 - AluY SINE Alu -2 309 186 435 170 0 0 chr11 47026622 47026722 -101756750 + G-rich Low_complexity Low_complexity 1 100 0 206 337 48 0 chr11 47026925 47027008 -101756464 - L2 LINE L2 -3 3269 3183 206 204 0 20 chr11 47027135 47027184 -101756288 + MIR SINE MIR 82 129 -79 225 295 53 11 chr11 47027184 47027279 -101756193 - L2 LINE L2 -16 3297 3199 1787 154 0 13 chr11 47027656 47027967 -101755505 + AluJo SINE Alu 1 307 -5 180 0 0 0 chr11 47028324 47028344 -101755128 + (A)n Simple_repeat Simple_repeat 1 20 0 270 314 102 8 chr11 47028655 47028773 -101754699 - L2 LINE L2 -33 3239 3111 1570 168 3 32 chr11 47028807 47029123 -101754349 + AluJo SINE Alu 5 311 -1 967 218 0 0 chr11 47029128 47029293 -101754179 + FRAM SINE Alu 2 166 0 182 176 20 0 chr11 47029355 47029406 -101754066 + (AGTTG)n Simple_repeat Simple_repeat 3 54 0 389 224 6 0 chr11 47029419 47029580 -101753892 + (TTGTG)n Simple_repeat Simple_repeat 4 165 0 228 242 16 0 chr11 47029587 47029649 -101753823 + (AGTTG)n Simple_repeat Simple_repeat 2 64 0 454 207 11 0 chr11 47029658 47029832 -101753640 + (TTGTG)n Simple_repeat Simple_repeat 4 179 0 261 233 41 0 chr11 47029835 47029908 -101753564 + (GGTTG)n Simple_repeat Simple_repeat 3 78 0 252 303 83 9 chr11 47029930 47030039 -101753433 - L2 LINE L2 -231 3082 2966 441 223 201 0 chr11 47030919 47031058 -101752414 + MIR3 SINE MIR 36 202 -6 2109 155 12 26 chr11 47031775 47032117 -101751355 - MER1B DNA MER1_type 0 337 1 495 228 67 61 chr11 47032117 47032297 -101751175 + MIR SINE MIR 17 197 -65 230 361 23 23 chr11 47034932 47035062 -101748410 + L2 LINE L2 3183 3312 -1 224 363 46 58 chr11 47035995 47036254 -101747218 - L3 LINE CR1 -106 1471 1216 183 250 0 44 chr11 47036982 47037050 -101746422 - L2 LINE L2 -64 3249 3185 719 189 12 12 chr11 47037141 47037305 -101746167 + L1MC3 LINE L1 7461 7624 -161 2306 236 87 36 chr11 47037310 47038093 -101745379 + L1ME1 LINE L1 5314 6136 -30 2117 118 0 10 chr11 47038093 47038397 -101745075 + AluSq SINE Alu 1 301 -12 397 289 77 19 chr11 47038465 47038673 -101744799 + L1ME LINE L1 5583 5802 -319 353 210 78 132 chr11 47038675 47038700 -101744772 + L2 LINE L2 3120 3145 -168 1897 145 3 0 chr11 47038700 47038990 -101744482 - AluSx SINE Alu -16 296 6 353 210 78 132 chr11 47038990 47039169 -101744303 + L2 LINE L2 3145 3313 0 381 264 42 14 chr11 47039515 47039659 -101743813 + MER53 DNA DNA 32 179 -10 288 91 0 0 chr11 47040030 47040074 -101743398 + (CA)n Simple_repeat Simple_repeat 1 44 0 2188 97 0 0 chr11 47040096 47040395 -101743077 - AluSq SINE Alu -14 299 1 353 332 142 14 chr11 47040435 47040851 -101742621 - L1ME4a LINE L1 -268 5853 5385 214 269 54 32 chr11 47041920 47042013 -101741459 - MIR SINE MIR -55 153 59 190 0 32 32 chr11 47042420 47042451 -101741021 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 239 306 28 0 chr11 47042537 47042609 -101740863 - MIR SINE MIR -116 146 73 669 177 23 15 chr11 47042614 47042744 -101740728 + FLAM_C SINE Alu 3 133 0 290 162 0 122 chr11 47043029 47043103 -101740369 + L1MC4 LINE L1 7814 7878 -164 717 156 0 0 chr11 47043103 47043212 -101740260 - AluSx SINE Alu -8 304 196 810 85 0 0 chr11 47043212 47043318 -101740154 - AluSx SINE Alu -206 106 1 424 234 42 22 chr11 47043421 47043555 -101739917 + L1MC4 LINE L1 7880 8042 0 515 260 39 0 chr11 47044531 47044658 -101738814 - MIR SINE MIR -65 197 66 263 244 150 31 chr11 47045115 47045242 -101738230 - MIR3 SINE MIR -61 147 6 203 284 60 15 chr11 47045433 47045500 -101737972 + MIR SINE MIR 13 82 -180 335 289 206 6 chr11 47045502 47045682 -101737790 - L2 LINE L2 0 3272 3057 450 272 64 0 chr11 47045858 47045983 -101737489 + MIR SINE MIR 63 195 -67 1732 137 18 4 chr11 47046529 47046835 -101736637 - AluSx SINE Alu 0 310 1 1889 129 7 3 chr11 47046942 47047245 -101736227 - AluSg SINE Alu -6 304 1 1536 161 4 50 chr11 47047367 47047647 -101735825 - AluJo SINE Alu -45 267 1 1583 160 18 21 chr11 47047942 47048224 -101735248 + AluJo SINE Alu 1 281 -31 793 73 8 8 chr11 47048228 47048351 -101735121 + (GGAA)n Simple_repeat Simple_repeat 2 124 0 913 101 31 0 chr11 47048429 47048558 -101734914 + AluSq/x SINE Alu 1 133 -179 187 184 0 0 chr11 47049293 47049331 -101734141 + MIR SINE MIR 117 154 -108 796 207 25 36 chr11 47049896 47049952 -101733520 - MIR SINE MIR -1 261 206 2174 88 0 3 chr11 47049952 47050279 -101733193 - AluSq SINE Alu 0 326 1 796 207 25 36 chr11 47050279 47050441 -101733031 - MIR SINE MIR -56 206 40 2009 230 43 13 chr11 47051239 47051796 -101731676 + L1M4 LINE L1 4792 5365 -781 1465 145 43 46 chr11 47051796 47051853 -101731619 + L1MB4 LINE L1 5878 5934 -246 2363 95 0 0 chr11 47051853 47052158 -101731314 + AluSq SINE Alu 1 305 -8 1465 145 43 46 chr11 47052158 47052403 -101731069 + L1MB4 LINE L1 5934 6179 -1 204 143 0 0 chr11 47052487 47052522 -101730950 + L2 LINE L2 2722 2756 -558 2000 119 7 0 chr11 47052561 47052875 -101730597 + AluJb SINE Alu 1 316 0 323 342 26 13 chr11 47052934 47053089 -101730383 + L2 LINE L2 2889 3045 -227 181 211 53 0 chr11 47053299 47053337 -101730135 + MIR SINE MIR 108 147 -115 352 164 64 82 chr11 47054072 47054182 -101729290 - L2 LINE L2 0 3313 3206 2398 67 3 0 chr11 47054479 47054779 -101728693 - AluY SINE Alu -5 306 6 663 271 28 17 chr11 47054900 47055104 -101728368 + MIR SINE MIR 43 245 -17 191 250 0 0 chr11 47055450 47055490 -101727982 + L2 LINE L2 3126 3165 -107 195 335 110 53 chr11 47056066 47056275 -101727197 + L2 LINE L2 3034 3254 -18 183 362 0 14 chr11 47056286 47056355 -101727117 + MIR3 SINE MIR 120 187 -21 188 211 200 11 chr11 47056844 47056939 -101726533 + MIR SINE MIR 34 146 -62 236 192 162 20 chr11 47057620 47057719 -101725753 + MIR SINE MIR 34 146 -62 299 274 0 34 chr11 47061601 47061718 -101721754 + L1ME3 LINE L1 6036 6148 -14 194 258 75 43 chr11 47063732 47063825 -101719647 - MIR SINE MIR -107 155 60 492 279 0 0 chr11 47064291 47064463 -101719009 + (TG)n Simple_repeat Simple_repeat 1 172 0 207 191 0 73 chr11 47065621 47065731 -101717741 + (CCGCG)n Simple_repeat Simple_repeat 5 106 0 189 94 0 0 chr11 47066208 47066240 -101717232 + (CTG)n Simple_repeat Simple_repeat 3 34 0 475 147 43 0 chr11 47066697 47066813 -101716659 + CT-rich Low_complexity Low_complexity 1 121 0 241 270 0 27 chr11 47066943 47067017 -101716455 + C-rich Low_complexity Low_complexity 5 76 0 273 273 0 0 chr11 47067922 47067999 -101715473 - MIR SINE MIR -117 145 69 279 369 66 25 chr11 47068715 47068989 -101714483 + L2 LINE L2 2869 3153 -119 2012 90 3 28 chr11 47069057 47069384 -101714088 + AluY SINE Alu 1 320 0 397 225 300 40 chr11 47070934 47071161 -101712311 + L2 LINE L2 3026 3311 -2 301 160 53 0 chr11 47071301 47071376 -101712096 + CT-rich Low_complexity Low_complexity 2 80 0 893 130 5 27 chr11 47071384 47071568 -101711904 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 2168 129 0 0 chr11 47071578 47071888 -101711584 - AluY SINE Alu 0 311 2 544 278 59 12 chr11 47072367 47072536 -101710936 - MIR SINE MIR -77 185 9 584 229 34 43 chr11 47074983 47075153 -101708319 + MIR SINE MIR 32 199 -62 227 390 18 5 chr11 47075504 47075699 -101707773 - MIR3 SINE MIR -55 207 10 207 255 0 0 chr11 47075958 47076005 -101707467 + L2 LINE L2 3213 3259 -13 22 0 0 0 chr11 47076588 47076610 -101706862 + GC_rich Low_complexity Low_complexity 1 22 0 477 229 82 53 chr11 47077299 47077469 -101706003 + MIR SINE MIR 14 188 -74 469 80 67 0 chr11 47077874 47077949 -101705523 - L1MB5 LINE L1 0 6174 6095 1080 222 109 54 chr11 47078435 47078877 -101704595 - MLT1C LTR MaLR 0 467 2 209 303 160 25 chr11 47080001 47080120 -101703352 + L2 LINE L2 2953 3087 -185 181 150 0 75 chr11 47080887 47080927 -101702545 + MIR SINE MIR 117 153 -109 530 215 120 60 chr11 47081151 47081351 -101702121 + MIR SINE MIR 50 261 -1 357 275 154 28 chr11 47082143 47082325 -101701147 + L2 LINE L2 3108 3312 -1 * 402 300 52 36 chr11 47082311 47082512 -101700960 - MIR SINE MIR -56 206 3 561 285 64 12 chr11 47082635 47082807 -101700665 - MIR SINE MIR -58 204 24 222 91 0 0 chr11 47083059 47083092 -101700380 + (TG)n Simple_repeat Simple_repeat 2 34 0 200 344 11 0 chr11 47083550 47083643 -101699829 + (TG)n Simple_repeat Simple_repeat 1 94 0 401 214 38 30 chr11 47084014 47084145 -101699327 + MIR SINE MIR 1 132 -130 255 261 0 14 chr11 47085163 47085232 -101698240 + C-rich Low_complexity Low_complexity 3 70 0 969 75 0 0 chr11 47085689 47085822 -101697650 + L1PA13 LINE L1 6027 6159 -4 514 314 93 5 chr11 47086337 47086531 -101696941 - MIR SINE MIR -45 217 7 1366 208 123 14 chr11 47087233 47087647 -101695825 + MLT1C LTR MaLR 7 465 -2 360 288 63 0 chr11 47087677 47087788 -101695684 + MIR SINE MIR 89 206 -56 1461 179 63 11 chr11 47088575 47088866 -101694606 - AluJb SINE Alu 0 305 1 231 301 117 0 chr11 47089230 47089333 -101694139 + L2 LINE L2 3138 3252 -20 218 204 0 20 chr11 47089338 47089387 -101694085 - MIR SINE MIR -79 129 82 1610 70 22 26 chr11 47089956 47090186 -101693286 - L1PA10 LINE L1 -1 6167 5939 435 255 0 10 chr11 47090252 47090354 -101693118 - MIR SINE MIR -101 161 61 411 256 75 24 chr11 47090950 47091144 -101692328 + MIR SINE MIR 48 256 -6 207 204 0 0 chr11 47092034 47092078 -101691394 + CT-rich Low_complexity Low_complexity 2 45 0 245 29 29 0 chr11 47092711 47092745 -101690727 + (TTA)n Simple_repeat Simple_repeat 2 36 0 192 125 0 0 chr11 47094620 47094652 -101688820 + (T)n Simple_repeat Simple_repeat 1 32 0 2136 122 0 17 chr11 47096816 47097111 -101686361 - AluJb SINE Alu -22 290 1 240 59 0 0 chr11 47098372 47098406 -101685066 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 2211 113 0 0 chr11 47098406 47098689 -101684783 - AluSx SINE Alu -29 283 1 205 229 14 57 chr11 47098783 47098853 -101684619 + MIR SINE MIR 183 249 -13 189 107 0 0 chr11 47099060 47099088 -101684384 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1580 153 71 0 chr11 47099097 47099352 -101684120 - AluJb SINE Alu -39 273 1 324 343 9 9 chr11 47099380 47099488 -101683984 + HAL1b LINE L1 1196 1303 -45 2185 115 3 13 chr11 47099820 47099844 -101683628 - AluSx SINE Alu -11 301 278 243 0 0 0 chr11 47099844 47099871 -101683601 + (TG)n Simple_repeat Simple_repeat 1 27 0 2185 115 3 13 chr11 47099871 47100150 -101683322 - AluSx SINE Alu -34 278 1 333 283 131 10 chr11 47100534 47100633 -101682839 + MIR SINE MIR 36 146 -62 317 235 15 0 chr11 47100808 47100876 -101682596 - L2 LINE L2 -212 3060 2992 351 294 194 17 chr11 47101231 47101411 -101682061 + MIR SINE MIR 20 231 -31 383 308 144 19 chr11 47102266 47102474 -101680998 - MIR SINE MIR -4 258 25 578 259 38 38 chr11 47103064 47103249 -101680223 + L2 LINE L2 1146 1330 -1984 184 264 38 0 chr11 47104374 47104427 -101679045 + MIR SINE MIR 77 131 -77 6821 86 1 18 chr11 47104995 47105079 -101678393 - L1P LINE L1 -4214 1932 1848 2153 122 23 3 chr11 47105079 47105383 -101678089 + AluY SINE Alu 2 311 0 6821 86 1 18 chr11 47105383 47106320 -101677152 - L1P LINE L1 -4298 1848 928 30747 95 11 11 chr11 47106468 47111965 -101671507 - L1PA7 LINE L1 -56 6098 599 2112 146 0 0 chr11 47111978 47112273 -101671199 - AluSx SINE Alu -17 295 1 966 200 6 4 chr11 47113086 47113285 -101670187 - MIR SINE MIR -5 257 61 223 326 61 0 chr11 47113363 47113461 -101670011 - L2 LINE L2 0 3313 3210 541 243 179 75 chr11 47113481 47113885 -101669587 + MLT1J LTR MaLR 2 427 -19 1895 159 7 3 chr11 47113959 47114254 -101669218 + AluSx SINE Alu 1 296 -16 2391 95 0 3 chr11 47114357 47114662 -101668810 + AluSc SINE Alu 1 304 -5 180 250 50 0 chr11 47114682 47114722 -101668750 - L2 LINE L2 -13 3259 3218 * 373 295 45 0 chr11 47114690 47114802 -101668670 - MIR SINE MIR -17 245 129 452 342 60 82 chr11 47115010 47115684 -101667788 - L2 LINE L2 0 3272 2612 233 186 51 17 chr11 47115770 47115829 -101667643 - MIR3 SINE MIR -133 75 15 1853 215 43 5 chr11 47116990 47117366 -101666106 + MLT1B LTR MaLR 1 390 0 1588 236 62 2 chr11 47117662 47118094 -101665378 + L1MC4 LINE L1 7204 7661 -381 686 207 35 27 chr11 47118103 47118292 -101665180 + L1MC4 LINE L1 6261 6358 -1 292 250 156 23 chr11 47118474 47118602 -101664870 + MIR SINE MIR 93 237 -25 1981 153 3 10 chr11 47118609 47118917 -101664555 - AluJb SINE Alu -3 309 4 254 273 52 13 chr11 47119173 47119250 -101664222 + MIR SINE MIR 11 90 -172 543 286 35 18 chr11 47119257 47119428 -101664044 - MLT1I LTR MaLR -8 401 228 352 260 98 0 chr11 47119454 47119577 -101663895 - MLT1I LTR MaLR -274 135 1 310 287 38 32 chr11 47119581 47119738 -101663734 + MIR SINE MIR 89 246 -16 306 0 0 0 chr11 47119942 47119976 -101663496 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 191 311 0 0 chr11 47120054 47120099 -101663373 - L2 LINE L2 -19 3294 3250 2462 74 7 0 chr11 47121004 47121301 -101662171 + AluSp SINE Alu 1 299 -14 301 348 118 0 chr11 47121304 47121439 -101662033 + MIR SINE MIR 76 226 -36 371 306 35 35 chr11 47121653 47121823 -101661649 - L2 LINE L2 -189 3083 2914 351 270 68 14 chr11 47122078 47122226 -101661246 + L3 LINE CR1 1200 1355 -222 218 277 15 15 chr11 47123169 47123234 -101660238 + GA-rich Low_complexity Low_complexity 2 66 0 591 266 101 11 chr11 47123670 47123858 -101659614 - MIR SINE MIR -2 260 56 818 192 13 0 chr11 47123915 47124066 -101659406 - FRAM SINE Alu -23 153 1 521 295 90 0 chr11 47124085 47124241 -101659231 - MIR SINE MIR -65 197 28 235 175 18 0 chr11 47124559 47124616 -101658856 - L1MB3 LINE L1 -30 6153 6096 936 167 8 96 chr11 47124777 47125017 -101658455 - MER20 DNA MER1_type 0 219 1 337 307 129 82 chr11 47125039 47125479 -101657993 + L2 LINE L2 2812 3272 0 211 327 0 0 chr11 47125532 47125584 -101657888 - L2 LINE L2 -73 3199 3148 399 343 36 28 chr11 47125705 47125953 -101657519 - L2 LINE L2 -185 3087 2838 385 296 16 8 chr11 47126516 47126641 -101656831 - MIR SINE MIR -110 152 27 323 283 10 116 chr11 47126760 47126844 -101656628 - MIR SINE MIR -82 180 89 1817 176 0 10 chr11 47126844 47127156 -101656316 + AluJo SINE Alu 1 288 -24 323 283 10 116 chr11 47127156 47127170 -101656302 - MIR SINE MIR -173 89 75 1603 158 42 11 chr11 47127170 47127454 -101656018 + AluJb SINE Alu 1 293 -19 323 283 10 116 chr11 47127454 47127552 -101655920 - MIR SINE MIR -187 75 4 228 176 255 0 chr11 47127946 47127997 -101655475 - L2 LINE L2 -23 3290 3227 256 245 66 94 chr11 47128144 47128250 -101655222 - L2 LINE L2 -37 3235 3133 712 294 25 3 chr11 47129175 47129404 -101654068 - MIR SINE MIR -11 251 16 460 196 181 53 chr11 47129453 47129586 -101653886 - MER63 DNA MER1_type -285 777 2 308 309 161 18 chr11 47129643 47129811 -101653661 - L2 LINE L2 -436 2878 2687 510 96 0 0 chr11 47130251 47130324 -101653148 + (TGGA)n Simple_repeat Simple_repeat 2 74 0 299 238 24 95 chr11 47130866 47130992 -101652480 + MIR SINE MIR 95 211 -51 200 211 0 0 chr11 47131374 47131412 -101652060 - L2 LINE L2 -18 3254 3217 817 246 170 44 chr11 47131514 47131920 -101651552 + L2 LINE L2 2857 3313 0 2339 127 49 42 chr11 47132146 47132571 -101650901 + MSTA LTR MaLR 1 428 0 2227 74 3 0 chr11 47132940 47133223 -101650249 - HERVL LTR ERVL -4275 1379 1096 638 197 0 0 chr11 47133609 47133746 -101649726 - AluSg SINE Alu -172 138 2 1948 256 70 17 chr11 47133807 47134085 -101649387 - L1M4 LINE L1 -2649 3497 3235 1362 178 23 58 chr11 47134085 47134394 -101649078 - AluJo SINE Alu -14 298 1 1948 256 70 17 chr11 47134394 47134934 -101648538 - L1M4 LINE L1 -2911 3235 2636 2751 16 0 0 chr11 47135199 47135509 -101647963 - AluYb8 SINE Alu -8 310 1 286 229 104 21 chr11 47136435 47136531 -101646941 - MIR3 SINE MIR -7 201 98 2204 100 0 10 chr11 47138124 47138434 -101645038 - AluSx SINE Alu -5 307 1 1391 166 80 53 chr11 47138553 47138854 -101644618 + AluJo SINE Alu 1 309 -3 460 171 125 11 chr11 47141678 47141766 -101641706 + L2 LINE L2 3172 3269 -3 5499 167 25 16 chr11 47141882 47142985 -101640487 + L1MD1 LINE L1 4901 6025 -217 2041 100 0 10 chr11 47142985 47143285 -101640187 - AluY SINE Alu -14 297 1 5499 167 25 16 chr11 47143285 47143506 -101639966 + L1MD1 LINE L1 6025 6242 0 300 270 27 0 chr11 47143679 47143753 -101639719 - L1MC4 LINE L1 -1378 6664 6589 373 265 38 0 chr11 47145087 47145174 -101638298 + MIR3 SINE MIR 77 167 -41 308 312 64 8 chr11 47146740 47146865 -101636607 - MIR3 SINE MIR -13 195 64 385 298 26 18 chr11 47147136 47147250 -101636222 + L2 LINE L2 3184 3298 -15 185 304 36 0 chr11 47147269 47147325 -101636147 - MIR SINE MIR -49 213 156 310 237 0 0 chr11 47148740 47148799 -101634673 + tRNA-Ile-ATT tRNA tRNA 1 59 -18 858 262 161 19 chr11 47149190 47149704 -101633768 - L2 LINE L2 0 3313 2746 1657 192 68 29 chr11 47149767 47150178 -101633294 + MLT1C LTR MaLR 37 463 -4 1429 261 161 14 chr11 47150412 47150971 -101632501 - L2 LINE L2 -609 2705 2065 683 244 152 52 chr11 47151974 47152453 -101631019 - L1ME4a LINE L1 -3 6118 5592 307 242 11 66 chr11 47152457 47152548 -101630924 - L1MC4 LINE L1 -1343 6699 6614 230 321 86 49 chr11 47152571 47152814 -101630658 - L1ME4a LINE L1 -562 5559 5308 376 265 53 30 chr11 47153587 47153719 -101629753 + MIR3 SINE MIR 65 199 -9 1996 109 6 38 chr11 47154562 47154882 -101628590 - AluSx SINE Alu -2 310 1 261 295 205 52 chr11 47156918 47157119 -101626353 + L3b LINE CR1 1119 1378 -205 1867 106 0 81 chr11 47157119 47157440 -101626032 + AluSq SINE Alu 1 295 -18 261 295 205 52 chr11 47157440 47157526 -101625946 + L3b LINE CR1 1378 1450 -133 1341 201 48 0 chr11 47157531 47157804 -101625668 - AluJo SINE Alu -10 302 17 200 367 0 0 chr11 47158013 47158073 -101625399 - L2 LINE L2 -218 3054 2995 2098 101 3 3 chr11 47158732 47159029 -101624443 - AluSc SINE Alu -12 297 1 225 0 0 0 chr11 47159029 47159054 -101624418 + (T)n Simple_repeat Simple_repeat 1 25 0 314 54 0 0 chr11 47159054 47159091 -101624381 - LTR8 LTR ERV1 -107 584 548 1890 176 27 0 chr11 47159176 47159511 -101623961 + MER2 DNA MER2_type 1 344 0 853 208 6 18 chr11 47159748 47159916 -101623556 + FAM SINE Alu 1 166 -9 425 227 45 0 chr11 47160231 47160319 -101623153 - AluJo SINE Alu -100 212 121 344 321 0 37 chr11 47160602 47160762 -101622710 + MIR SINE MIR 3 154 -57 205 289 53 13 chr11 47160782 47160858 -101622614 - L2 LINE L2 0 3313 3235 539 264 45 60 chr11 47161808 47162074 -101621398 + MIR SINE MIR 2 256 -6 831 225 97 18 chr11 47162129 47162356 -101621116 + MIR SINE MIR 15 259 -3 226 139 23 0 chr11 47162881 47162924 -101620548 + L2 LINE L2 3228 3271 -1 225 0 0 0 chr11 47162956 47162981 -101620491 + (T)n Simple_repeat Simple_repeat 1 25 0 311 311 22 11 chr11 47165161 47165251 -101618221 - MIR3 SINE MIR -5 203 113 26 0 0 0 chr11 47165702 47165728 -101617744 + AT_rich Low_complexity Low_complexity 1 26 0 2092 93 7 0 chr11 47166091 47166369 -101617103 - AluSx SINE Alu -31 281 2 202 216 0 0 chr11 47166865 47166902 -101616570 + (CA)n Simple_repeat Simple_repeat 1 37 0 502 259 92 17 chr11 47167125 47167299 -101616173 - MIR3 SINE MIR -4 204 18 8535 115 2 11 chr11 47169596 47170826 -101612646 - L1P LINE L1 -4569 1577 359 1803 145 51 0 chr11 47170827 47171103 -101612369 - L1P LINE L1 -5846 300 11 783 123 0 9 chr11 47171120 47171234 -101612238 - AluJo SINE Alu -187 125 13 1638 186 3 6 chr11 47171268 47171580 -101611892 - AluSx SINE Alu 0 312 2 314 207 0 0 chr11 47171742 47171800 -101611672 - MLT1B LTR MaLR -6 384 327 1235 183 126 19 chr11 47173042 47173166 -101610306 + AluJo SINE Alu 3 112 -190 207 0 0 0 chr11 47173166 47173189 -101610283 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 1235 183 126 19 chr11 47173189 47173327 -101610145 + AluJo SINE Alu 112 293 -9 652 250 64 16 chr11 47173341 47173529 -101609943 - MIR SINE MIR -44 218 22 557 260 24 0 chr11 47173915 47174042 -101609430 + MIR SINE MIR 68 197 -65 626 316 107 8 chr11 47174293 47174556 -101608916 + MLT1K LTR MaLR 42 330 -258 529 216 23 76 chr11 47174732 47174846 -101608626 - MER103 DNA DNA -3 163 59 2207 75 0 46 chr11 47174846 47175152 -101608320 - AluSp SINE Alu -21 292 1 529 216 23 76 chr11 47175152 47175208 -101608264 - MER103 DNA DNA -107 59 2 423 174 224 0 chr11 47175214 47175312 -101608160 - L2 LINE L2 -1 3312 3193 8999 63 4 15 chr11 47176229 47177356 -101606116 - HERVL-A1 LTR ERVL -4539 1115 1 318 100 0 20 chr11 47177356 47177406 -101606066 - MLT2A1 LTR ERVL 0 453 405 2793 92 22 30 chr11 47177619 47178021 -101605451 - MLT2A1 LTR ERVL -45 399 1 1824 256 59 28 chr11 47178097 47178672 -101604800 + MLT1E LTR MaLR 1 593 0 1367 177 107 10 chr11 47178936 47179235 -101604237 + MER2 DNA MER2_type 16 343 -2 289 255 138 55 chr11 47179381 47179526 -101603946 + MIR SINE MIR 106 262 0 299 325 87 87 chr11 47179841 47180220 -101603252 - MLT1K LTR MaLR -18 570 192 695 295 118 25 chr11 47180374 47180740 -101602732 + MLT1L LTR MaLR 216 615 0 235 270 170 20 chr11 47181192 47181292 -101602180 + MIR SINE MIR 32 146 -62 342 221 63 0 chr11 47181339 47181434 -101602038 + MIR SINE MIR 148 248 -14 327 331 0 7 chr11 47182031 47182182 -101601290 + CT-rich Low_complexity Low_complexity 2 151 0 364 318 0 7 chr11 47182221 47182372 -101601100 + CT-rich Low_complexity Low_complexity 1 150 0 346 286 10 0 chr11 47182713 47182811 -101600661 - MIR3 SINE MIR -52 156 58 248 320 203 0 chr11 47182799 47182952 -101600520 + MIR SINE MIR 79 262 0 * 452 206 122 0 chr11 47183675 47183782 -101599690 - L2 LINE L2 0 3272 3153 310 188 38 25 chr11 47184453 47184533 -101598939 - MIR SINE MIR -124 138 58 282 244 13 39 chr11 47184604 47184682 -101598790 + MIR3 SINE MIR 93 168 -40 231 36 0 0 chr11 47184889 47184917 -101598555 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 420 315 8 0 chr11 47186231 47186358 -101597114 + L2 LINE L2 3145 3272 0 636 262 53 34 chr11 47186391 47186597 -101596875 - MIR SINE MIR -45 217 8 336 333 51 6 chr11 47187348 47187504 -101595968 - L2 LINE L2 0 3313 3151 866 318 67 13 chr11 47187684 47188147 -101595325 + L1ME3A LINE L1 5465 5952 -218 181 125 31 0 chr11 47188183 47188215 -101595257 + MIR SINE MIR 118 150 -112 193 281 202 0 chr11 47188900 47189014 -101594458 - MIR SINE MIR -13 249 113 443 265 22 15 chr11 47189086 47189222 -101594250 + MIR3 SINE MIR 20 156 -52 1257 283 100 40 chr11 47189228 47189779 -101593693 - MLT1E LTR MaLR -9 584 1 1185 134 143 5 chr11 47190218 47190427 -101593045 + AluSq SINE Alu 1 238 -75 232 122 61 0 chr11 47191371 47191420 -101592052 + L2 LINE L2 3007 3058 -214 319 256 71 48 chr11 47192494 47192688 -101590784 + MIR3 SINE MIR 9 206 -56 267 321 19 0 chr11 47197322 47197428 -101586044 - MIR3 SINE MIR -7 201 94 26 0 0 0 chr11 47198829 47198855 -101584617 + AT_rich Low_complexity Low_complexity 1 26 0 231 36 0 0 chr11 47202280 47202308 -101581164 + (TG)n Simple_repeat Simple_repeat 2 29 0 337 337 29 35 chr11 47202456 47202628 -101580844 + MIR SINE MIR 36 206 -56 1511 192 72 28 chr11 47202844 47203203 -101580269 - MLT1B LTR MaLR 0 390 16 232 398 39 0 chr11 47203896 47203999 -101579473 + L2 LINE L2 3149 3255 -17 870 206 67 70 chr11 47204156 47204500 -101578972 - L1ME1 LINE L1 -194 6039 5694 * 3916 238 146 11 chr11 47204489 47205019 -101578453 - L1ME1 LINE L1 -2206 4009 3552 1702 156 26 66 chr11 47205019 47205397 -101578075 - MLT1A1 LTR MaLR -2 363 1 3916 238 146 11 chr11 47205397 47206646 -101576826 - L1ME1 LINE L1 -2663 3552 2027 2479 273 103 20 chr11 47206657 47207826 -101575646 + L2 LINE L2 2031 3312 -1 232 293 71 20 chr11 47209167 47209266 -101574206 - MIR SINE MIR -61 201 98 230 298 0 53 chr11 47209417 47209511 -101573961 + L2 LINE L2 3185 3273 -40 2339 96 3 0 chr11 47209520 47209811 -101573661 - AluY SINE Alu -19 292 1 1949 170 3 7 chr11 47210302 47210636 -101572836 + AluJo SINE Alu 1 333 0 2289 107 0 16 chr11 47212047 47212355 -101571117 + AluSq SINE Alu 1 303 -10 952 122 0 0 chr11 47213417 47213540 -101569932 - AluSq/x SINE Alu -189 123 1 182 241 19 19 chr11 47213736 47213790 -101569682 - L2 LINE L2 -304 2968 2915 2579 34 10 0 chr11 47213799 47214093 -101569379 + AluY SINE Alu 1 297 -14 1529 185 32 101 chr11 47214804 47214964 -101568508 + MER63B DNA MER1_type 1 170 -892 1586 106 0 0 chr11 47214964 47215192 -101568280 + AluSg/x SINE Alu 84 311 0 1529 185 32 101 chr11 47215192 47215468 -101568004 + MER63B DNA MER1_type 170 408 -28 367 227 200 20 chr11 47216125 47216275 -101567197 - MIR SINE MIR -3 259 83 449 283 3 2 chr11 47216555 47216696 -101566776 + MIR SINE MIR 19 157 -61 229 368 37 6 chr11 47217536 47217699 -101565773 - MIR3 SINE MIR -36 172 5 203 255 167 10 chr11 47218448 47218550 -101564922 + MIR3 SINE MIR 86 203 -5 389 20 20 0 chr11 47218939 47218989 -101564483 + (TG)n Simple_repeat Simple_repeat 2 52 0 2086 142 0 13 chr11 47219038 47219340 -101564132 + AluSx SINE Alu 1 298 -14 436 199 57 71 chr11 47219347 47219488 -101563984 + MIR SINE MIR 124 262 0 258 32 0 0 chr11 47219498 47219529 -101563943 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2087 106 22 0 chr11 47219531 47219806 -101563666 - AluSp SINE Alu -32 281 1 315 219 42 52 chr11 47219900 47220092 -101563380 + MER113 DNA MER1_type? 53 242 -279 1025 193 0 6 chr11 47220138 47220314 -101563158 + AluJo SINE Alu 122 296 -16 344 248 178 0 chr11 47220337 47220466 -101563006 + L1MD2 LINE L1 6194 6345 -14 643 266 145 8 chr11 47220474 47220722 -101562750 + MER113 DNA MER1_type? 240 521 0 266 343 76 9 chr11 47220922 47221027 -101562445 + MIR SINE MIR 36 147 -61 563 227 9 0 chr11 47221153 47221263 -101562209 + MER81 DNA DNA 2 112 -2 1118 148 7 76 chr11 47221280 47221571 -101561901 + MER33 DNA MER1_type 37 307 -17 401 299 102 6 chr11 47222961 47223118 -101560354 + MIR3 SINE MIR 28 199 -9 457 271 29 67 chr11 47223908 47224118 -101559354 + L2 LINE L2 3104 3305 -8 1200 257 56 45 chr11 47224369 47224813 -101558659 - LTR33 LTR ERVL -72 449 1 1029 239 63 41 chr11 47224862 47225357 -101558115 - MLT1G LTR MaLR -36 519 10 190 306 14 28 chr11 47225568 47225640 -101557832 - MIR SINE MIR -59 149 79 899 334 45 24 chr11 47226187 47226561 -101556911 + MER115 DNA AcHobo 54 435 -258 827 156 118 57 chr11 47226823 47227034 -101556438 - MSTA LTR MaLR -2 426 203 499 165 174 0 chr11 47227363 47227472 -101556000 - MIR SINE MIR -88 174 47 2662 135 39 11 chr11 47228352 47228818 -101554654 - L1MB2 LINE L1 0 6171 5693 361 291 19 0 chr11 47228882 47228985 -101554487 - MIR SINE MIR -109 153 49 383 233 11 22 chr11 47229133 47229223 -101554249 + MIR SINE MIR 4 92 -170 227 133 0 44 chr11 47229223 47229268 -101554204 + MER117 DNA MER1_type 117 159 -38 1715 174 10 10 chr11 47229650 47230130 -101553342 - AluJb SINE Alu 0 312 14 216 245 19 0 chr11 47231014 47231067 -101552405 + G-rich Low_complexity Low_complexity 2 55 0 304 295 103 58 chr11 47231199 47231355 -101552117 - MIR3 SINE MIR -23 185 23 417 297 101 72 chr11 47231848 47232245 -101551227 + MLT1K LTR MaLR 121 534 -54 480 35 0 0 chr11 47232245 47232303 -101551169 + (CTATT)n Simple_repeat Simple_repeat 2 59 0 417 297 101 72 chr11 47232303 47232360 -101551112 + MLT1K LTR MaLR 534 588 0 789 205 6 93 chr11 47233175 47233382 -101550090 - MIR SINE MIR -54 208 18 417 279 60 0 chr11 47234389 47234523 -101548949 + MIR3 SINE MIR 54 193 -15 422 316 94 19 chr11 47234649 47234861 -101548611 - MIR SINE MIR 0 262 35 239 263 17 143 chr11 47235501 47235676 -101547796 + LTR67 LTR ERVL 37 189 -368 672 219 89 24 chr11 47235989 47236158 -101547314 - MIR SINE MIR -70 192 13 1038 167 0 0 chr11 47236174 47236336 -101547136 + FRAM SINE Alu 1 162 -14 2166 169 129 24 chr11 47236339 47236796 -101546676 + MLT1D LTR MaLR 1 505 0 236 320 0 0 chr11 47236874 47236952 -101546520 + L2 LINE L2 3195 3272 0 2350 107 0 0 chr11 47237571 47237870 -101545602 - AluSq SINE Alu -14 299 1 465 140 54 0 chr11 47238001 47238094 -101545378 + L1MD3 LINE L1 7898 7995 0 253 243 162 0 chr11 47238234 47238308 -101545164 + L2 LINE L2 3141 3226 -46 461 266 158 40 chr11 47238308 47238485 -101544987 - MIR SINE MIR -31 231 34 559 266 85 16 chr11 47238528 47238716 -101544756 + MIR SINE MIR 36 236 -26 357 24 0 0 chr11 47238761 47238803 -101544669 + (ATG)n Simple_repeat Simple_repeat 1 42 0 640 297 160 33 chr11 47239968 47240723 -101542749 - L2 LINE L2 -109 3204 2354 537 144 0 0 chr11 47240781 47240871 -101542601 + L1 LINE L1 5194 5283 -863 6238 72 2 0 chr11 47240889 47241691 -101541781 + THE1A-int LTR MaLR 777 1580 0 2535 110 6 8 chr11 47241691 47242047 -101541425 + THE1A LTR MaLR 1 355 0 681 274 49 63 chr11 47242048 47242479 -101540993 - L1MC5 LINE L1 -62 7899 7475 1948 154 0 61 chr11 47242479 47242855 -101540617 + MLT1A1 LTR MaLR 9 361 -4 344 303 6 37 chr11 47242858 47243020 -101540452 - L1MC5 LINE L1 -491 7470 7314 298 233 17 0 chr11 47244051 47244111 -101539361 - L2 LINE L2 -63 3209 3149 387 319 1 29 chr11 47244412 47244550 -101538922 - MIR SINE MIR -55 153 18 316 289 94 0 chr11 47244559 47244687 -101538785 - MIR3 SINE MIR -45 163 24 469 288 12 6 chr11 47245215 47245375 -101538097 - MER103 DNA DNA -2 164 4 209 316 126 0 chr11 47245488 47245583 -101537889 + L3 LINE CR1 1178 1284 -293 596 231 0 31 chr11 47245720 47245850 -101537622 + AluJb SINE Alu 2 127 -185 378 242 84 33 chr11 47245864 47246079 -101537393 + L1ME4a LINE L1 5600 5825 -296 1812 130 0 75 chr11 47246082 47246458 -101537014 + AluSx SINE Alu 1 353 0 181 329 137 0 chr11 47246579 47246652 -101536820 - MER5C DNA MER1_type -1 323 241 249 252 92 0 chr11 47246696 47246827 -101536645 + L1ME4a LINE L1 5968 6110 -11 2062 84 9 69 chr11 47246827 47247007 -101536465 - L1MA2 LINE L1 0 6304 6153 2248 116 9 35 chr11 47247007 47247326 -101536146 - AluSx SINE Alu 0 312 2 2062 84 9 69 chr11 47247326 47247492 -101535980 - L1MA2 LINE L1 -151 6153 5979 430 274 30 49 chr11 47248525 47248689 -101534783 - MIR SINE MIR -82 180 20 229 278 41 55 chr11 47249056 47249169 -101534303 + MIR3 SINE MIR 38 159 -49 487 290 6 35 chr11 47249179 47249348 -101534124 + MER5A DNA MER1_type 26 189 0 782 256 105 84 chr11 47250130 47250595 -101532877 - MER77 LTR ERV1 -7 598 194 * 2310 82 65 54 chr11 47250583 47250951 -101532521 + MER48 LTR ERV1 16 387 0 226 180 16 49 chr11 47250990 47251051 -101532421 - MER21B LTR ERV1 -671 192 134 499 231 9 45 chr11 47251076 47251235 -101532237 - MER77 LTR ERV1 -409 196 5 1619 171 44 24 chr11 47251317 47251610 -101531862 + AluJo SINE Alu 1 299 -13 180 0 0 0 chr11 47252489 47252509 -101530963 + (TCCC)n Simple_repeat Simple_repeat 2 21 0 290 291 100 0 chr11 47252718 47252828 -101530644 - L2 LINE L2 0 3272 3152 * 500 280 237 27 chr11 47252804 47253002 -101530470 + L2 LINE L2 2951 3106 -207 180 77 0 0 chr11 47253002 47253028 -101530444 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 500 280 237 27 chr11 47253028 47253129 -101530343 + L2 LINE L2 3106 3313 0 1011 280 28 4 chr11 47253782 47254032 -101529440 + MIR SINE MIR 7 262 0 480 274 78 59 chr11 47254349 47254553 -101528919 + L1MC/D LINE L1 4256 4463 -1683 988 148 7 19 chr11 47254553 47254708 -101528764 + AluJb SINE Alu 1 153 -159 1142 179 5 5 chr11 47254808 47255003 -101528469 + AluJb SINE Alu 102 296 -16 317 297 118 21 chr11 47255030 47255556 -101527916 + L1MC/D LINE L1 4487 5063 -1083 26 0 0 0 chr11 47255686 47255712 -101527760 + AT_rich Low_complexity Low_complexity 1 26 0 572 262 58 15 chr11 47255765 47256003 -101527469 + L1MC/D LINE L1 5352 5597 -572 1199 265 28 56 chr11 47256096 47256489 -101526983 + LTR16A LTR ERVL 57 438 -12 695 304 25 19 chr11 47256810 47257301 -101526171 + HERV16 LTR ERVL 351 881 -4115 979 274 11 7 chr11 47257303 47257573 -101525899 + HERV16 LTR ERVL 1589 1859 -3137 1659 290 54 25 chr11 47257584 47258389 -101525083 + HERV16 LTR ERVL 2569 3396 -1911 949 326 54 20 chr11 47258421 47259419 -101524053 + HERV16 LTR ERVL 3516 4518 -1136 338 324 59 7 chr11 47259788 47259924 -101523548 + MIR SINE MIR 47 189 -73 2419 107 0 0 chr11 47259926 47260236 -101523236 + AluSx SINE Alu 1 310 -2 24 0 0 0 chr11 47260249 47260273 -101523199 + AT_rich Low_complexity Low_complexity 1 24 0 1271 174 15 23 chr11 47260370 47260634 -101522838 - MLT1D LTR MaLR -243 262 1 411 303 26 20 chr11 47261047 47261199 -101522273 + MIR SINE MIR 107 259 -3 1018 262 80 25 chr11 47261278 47261640 -101521832 + MLT1J1 LTR MaLR 63 444 -2 391 289 147 49 chr11 47261851 47262076 -101521396 - MIR SINE MIR 0 262 16 776 244 81 102 chr11 47262643 47263053 -101520419 - MLT1H LTR MaLR -13 536 136 415 279 10 10 chr11 47263267 47263371 -101520101 - MIR SINE MIR -86 122 19 2434 55 0 23 chr11 47263446 47263755 -101519717 - AluY SINE Alu -7 304 3 338 313 22 15 chr11 47263883 47264017 -101519455 - MIR SINE MIR 0 262 128 485 223 148 55 chr11 47264583 47264839 -101518633 + L2 LINE L2 2348 2627 -687 1874 191 100 19 chr11 47264841 47265261 -101518211 + MLT1C LTR MaLR 2 455 -12 1869 151 0 14 chr11 47265619 47265897 -101517575 + AluSx SINE Alu 1 274 -38 462 143 0 0 chr11 47265900 47265977 -101517495 + AluS SINE Alu 224 300 -10 203 313 7 116 chr11 47266073 47266220 -101517252 + MIR3 SINE MIR 13 143 -65 569 302 0 80 chr11 47266225 47266437 -101517035 - MIR SINE MIR -61 201 7 275 243 136 97 chr11 47267003 47267209 -101516263 - MIR SINE MIR -35 227 14 201 161 48 16 chr11 47268254 47268316 -101515156 + (CA)n Simple_repeat Simple_repeat 2 65 0 332 137 65 24 chr11 47268360 47268484 -101514988 + (CA)n Simple_repeat Simple_repeat 1 129 0 214 161 48 16 chr11 47268520 47268644 -101514828 + (CA)n Simple_repeat Simple_repeat 2 129 0 182 147 27 27 chr11 47268696 47268771 -101514701 + (CA)n Simple_repeat Simple_repeat 1 75 0 219 149 0 60 chr11 47268786 47268853 -101514619 + (CA)n Simple_repeat Simple_repeat 1 63 0 1504 206 105 52 chr11 47268901 47268998 -101514474 + MLT1D LTR MaLR 1 91 -414 1822 186 41 19 chr11 47268998 47269364 -101514108 - MLT1A2 LTR MaLR 0 374 1 1504 206 105 52 chr11 47269364 47269732 -101513740 + MLT1D LTR MaLR 91 491 -14 2307 135 89 5 chr11 47269850 47270242 -101513230 + MSTA LTR MaLR 4 428 0 198 0 0 0 chr11 47270307 47270329 -101513143 + (T)n Simple_repeat Simple_repeat 1 22 0 302 305 30 84 chr11 47270931 47271098 -101512374 + MIR3 SINE MIR 1 158 -50 492 311 120 45 chr11 47271107 47271573 -101511899 - L2 LINE L2 -2 3311 2811 982 251 21 11 chr11 47271604 47271990 -101511482 - MLT1J LTR MaLR -87 424 3 563 292 110 71 chr11 47272052 47272565 -101510907 + L2 LINE L2 2342 2884 -388 2251 113 6 3 chr11 47272565 47272876 -101510596 - AluSx SINE Alu 0 312 1 563 292 110 71 chr11 47272876 47272999 -101510473 + L2 LINE L2 2884 3001 -271 315 171 26 66 chr11 47273710 47273786 -101509686 + L1MCa LINE L1 1995 2067 -4359 * 351 224 10 71 chr11 47273763 47273861 -101509611 + L1MC4 LINE L1 6892 6983 -1339 2238 115 0 10 chr11 47273887 47274182 -101509290 - AluSx SINE Alu -20 292 1 398 291 12 55 chr11 47274228 47274393 -101509079 + MIR3 SINE MIR 40 197 -11 312 256 55 42 chr11 47274440 47274708 -101508764 - MLT1I LTR MaLR -2 407 72 320 232 36 80 chr11 47275412 47275524 -101507948 - MIR SINE MIR -19 243 137 320 237 65 11 chr11 47275612 47275705 -101507767 + LTR67 LTR ERVL 352 449 -108 308 314 46 23 chr11 47275831 47276006 -101507466 + L2 LINE L2 2550 2728 -586 182 194 0 0 chr11 47276248 47276279 -101507193 + MIR SINE MIR 217 247 -15 204 224 52 0 chr11 47276282 47276340 -101507132 + (AATTG)n Simple_repeat Simple_repeat 1 61 0 377 312 3 85 chr11 47276410 47276692 -101506780 + MER102a DNA MER1_type 62 320 -10 215 265 239 0 chr11 47276714 47276831 -101506641 - MIR3 SINE MIR -62 146 2 253 284 130 25 chr11 47277486 47277517 -101505955 + L2 LINE L2 2689 2715 -599 2448 67 0 22 chr11 47277517 47277832 -101505640 + AluY SINE Alu 3 310 -1 253 284 130 25 chr11 47277832 47277962 -101505510 + L2 LINE L2 2715 2867 -447 330 227 0 0 chr11 47277981 47278047 -101505425 - L2 LINE L2 -1 3312 3247 219 69 0 0 chr11 47278264 47278293 -101505179 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 1010 265 117 27 chr11 47278294 47278474 -101504998 - L2 LINE L2 -12 3301 3139 708 194 0 0 chr11 47278474 47278598 -101504874 + FLAM_A SINE Alu 1 124 -9 2006 152 0 10 chr11 47278605 47278907 -101504565 + AluJb SINE Alu 1 299 -13 1010 265 117 27 chr11 47278907 47279240 -101504232 - L2 LINE L2 -179 3134 2725 1283 238 19 67 chr11 47279712 47280086 -101503386 + MLT1A2 LTR MaLR 19 374 0 297 204 25 117 chr11 47280086 47280142 -101503330 - Charlie7 DNA MER1_type -1 2611 2551 1708 188 3 0 chr11 47280142 47280435 -101503037 + AluJo SINE Alu 5 298 -14 297 204 25 117 chr11 47280435 47280540 -101502932 - Charlie7 DNA MER1_type -61 2551 2465 * 311 231 41 41 chr11 47280510 47280631 -101502841 - Charlie7 DNA MER1_type -2457 155 35 219 69 0 0 chr11 47280696 47280725 -101502747 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 286 244 146 0 chr11 47280908 47280990 -101502482 + L2 LINE L2 3220 3313 0 252 0 0 0 chr11 47281571 47281599 -101501873 + (TG)n Simple_repeat Simple_repeat 2 29 0 288 321 12 0 chr11 47281604 47281688 -101501784 + GA-rich Low_complexity Low_complexity 2 86 0 280 275 92 17 chr11 47281759 47281879 -101501593 + MIR3 SINE MIR 2 130 -78 230 292 26 53 chr11 47282478 47282591 -101500881 - MIR3 SINE MIR -96 112 3 180 0 0 0 chr11 47282604 47282624 -101500848 + (GCCTG)n Simple_repeat Simple_repeat 2 21 0 271 254 0 0 chr11 47282630 47282693 -101500779 + MIR SINE MIR 84 146 -62 208 284 167 10 chr11 47283197 47283299 -101500173 - MIR SINE MIR -113 149 32 1840 192 32 35 chr11 47283309 47283684 -101499788 - MLT1A2 LTR MaLR 0 374 1 211 284 104 0 chr11 47283921 47283988 -101499484 + MIR SINE MIR 108 181 -81 228 154 77 46 chr11 47284977 47285042 -101498430 - MIR SINE MIR -1 261 195 493 303 20 20 chr11 47285295 47285447 -101498025 - MIR SINE MIR -55 207 56 2398 77 0 0 chr11 47285894 47286193 -101497279 + AluSg SINE Alu 1 299 -11 282 116 0 0 chr11 47286507 47286550 -101496922 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 378 290 57 8 chr11 47286568 47286692 -101496780 - L2 LINE L2 -18 3254 3125 614 307 100 17 chr11 47286726 47287016 -101496456 + L2 LINE L2 3000 3313 0 1994 111 0 7 chr11 47287169 47287604 -101495868 + AluSg SINE Alu 3 435 0 193 159 0 45 chr11 47287608 47287652 -101495820 - L2 LINE L2 -340 2973 2932 514 303 28 22 chr11 47287799 47287977 -101495495 + MIR SINE MIR 77 255 -7 1801 171 10 3 chr11 47287977 47288286 -101495186 + AluJo SINE Alu 1 311 -1 217 297 31 0 chr11 47289259 47289323 -101494149 + MIR SINE MIR 78 143 -65 247 324 72 18 chr11 47289417 47289528 -101493944 + MIR SINE MIR 108 224 -38 265 314 0 39 chr11 47289615 47289717 -101493755 + L2 LINE L2 3122 3219 -94 1188 285 57 19 chr11 47289747 47290251 -101493221 - LTR33A LTR ERVL -4 519 29 242 317 24 0 chr11 47291068 47291150 -101492322 + L2 LINE L2 3186 3269 -3 1778 152 4 0 chr11 47291870 47292140 -101491332 - AluSx SINE Alu -39 273 3 28 0 0 0 chr11 47292245 47292273 -101491199 + AT_rich Low_complexity Low_complexity 1 28 0 192 267 0 0 chr11 47292273 47292333 -101491139 + L2 LINE L2 2989 3048 -224 374 218 23 11 chr11 47292455 47292542 -101490930 + MIR SINE MIR 26 113 -149 268 222 111 0 chr11 47293421 47293493 -101489979 + L2 LINE L2 3183 3262 -10 213 300 0 0 chr11 47293825 47293875 -101489597 + L2 LINE L2 3252 3301 -12 1770 184 3 0 chr11 47293890 47294200 -101489272 - AluJo SINE Alu -1 311 1 191 276 13 26 chr11 47294721 47294797 -101488675 + MIR SINE MIR 108 182 -80 197 181 193 0 chr11 47295175 47295258 -101488214 + MIR3 SINE MIR 58 156 -52 2118 93 0 14 chr11 47295446 47295737 -101487735 - AluSg SINE Alu -21 289 3 306 224 15 0 chr11 47296789 47296856 -101486616 - MER113 DNA MER1_type? -123 398 331 426 250 19 0 chr11 47297552 47297656 -101485816 + MIR SINE MIR 35 140 -122 359 193 59 0 chr11 47297773 47297892 -101485580 + (TA)n Simple_repeat Simple_repeat 2 127 0 370 268 144 7 chr11 47297894 47298047 -101485425 - MIR SINE MIR -64 198 25 1652 184 7 10 chr11 47298109 47298419 -101485053 + AluJb SINE Alu 4 312 0 368 186 24 32 chr11 47298422 47298546 -101484926 + GA-rich Low_complexity Low_complexity 3 125 0 421 351 69 10 chr11 47299171 47299373 -101484099 + MIR SINE MIR 48 261 -1 28 0 0 0 chr11 47300666 47300694 -101482778 + AT_rich Low_complexity Low_complexity 1 28 0 563 284 45 0 chr11 47300702 47300878 -101482594 + L1ME3 LINE L1 5976 6159 -3 223 315 222 9 chr11 47301142 47301250 -101482222 + MIR SINE MIR 58 188 -74 315 323 47 16 chr11 47302080 47302207 -101481265 + MIR SINE MIR 22 152 -56 2150 113 0 3 chr11 47302309 47302609 -101480863 - AluSx SINE Alu -13 299 1 185 229 14 57 chr11 47302703 47302773 -101480699 + MIR SINE MIR 183 249 -13 189 107 0 0 chr11 47302980 47303008 -101480464 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1492 153 71 0 chr11 47303017 47303272 -101480200 - AluJb SINE Alu -39 273 1 2060 115 3 13 chr11 47303740 47303764 -101479708 - AluSx SINE Alu -11 301 278 243 0 0 0 chr11 47303764 47303791 -101479681 + (TG)n Simple_repeat Simple_repeat 1 27 0 2060 115 3 13 chr11 47303791 47304070 -101479402 - AluSx SINE Alu -34 278 1 301 290 120 10 chr11 47304452 47304552 -101478920 + MIR SINE MIR 36 146 -62 194 288 0 17 chr11 47304588 47304647 -101478825 - L2 LINE L2 -2 3270 3213 300 235 15 0 chr11 47304718 47304786 -101478686 - L2 LINE L2 -212 3060 2992 337 294 194 17 chr11 47305141 47305321 -101478151 + MIR SINE MIR 20 231 -31 367 318 132 16 chr11 47306177 47306366 -101477106 - MIR SINE MIR -4 258 48 552 297 16 16 chr11 47306975 47307160 -101476312 + L2 LINE L2 1146 1330 -1984 621 214 14 14 chr11 47309012 47309157 -101474315 - MIR SINE MIR -69 193 49 1017 213 55 74 chr11 47310309 47310503 -101472969 + L2 LINE L2 2952 3148 -165 594 222 33 72 chr11 47310503 47310683 -101472789 + MER69A DNA AcHobo 1 173 -4 1017 213 55 74 chr11 47310683 47310773 -101472699 + L2 LINE L2 3148 3230 -83 2208 110 7 0 chr11 47310773 47311073 -101472399 - AluSx SINE Alu -10 302 1 1017 213 55 74 chr11 47311073 47311153 -101472319 + L2 LINE L2 3230 3310 -3 402 325 89 82 chr11 47311212 47311639 -101471833 + L2 LINE L2 2843 3272 0 201 204 37 19 chr11 47311699 47311753 -101471719 - MIR3 SINE MIR -1 207 153 263 143 0 0 chr11 47311829 47311871 -101471601 + MER4-int LTR ERV1 1111 1152 -5446 474 271 29 7 chr11 47312025 47312165 -101471307 - MIR3 SINE MIR -7 201 59 320 257 93 43 chr11 47312670 47312810 -101470662 - L1ME4a LINE L1 0 6121 5975 386 358 130 7 chr11 47312824 47313109 -101470363 - L2 LINE L2 -39 3233 2914 414 0 0 0 chr11 47313294 47313340 -101470132 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 31 26 0 0 chr11 47313359 47313397 -101470075 + AT_rich Low_complexity Low_complexity 1 38 0 391 300 43 36 chr11 47313651 47313791 -101469681 - MLT1K LTR MaLR -350 238 98 373 242 45 70 chr11 47313794 47313951 -101469521 + L1ME3 LINE L1 5944 6096 -66 2036 117 7 0 chr11 47313992 47314290 -101469182 + AluSx SINE Alu 3 302 -10 1771 165 0 22 chr11 47314290 47314606 -101468866 + AluJo SINE Alu 3 311 -1 330 340 177 0 chr11 47315250 47315453 -101468019 + MIR SINE MIR 3 241 -21 1728 173 0 13 chr11 47315974 47316280 -101467192 - AluJo SINE Alu -10 302 1 180 143 0 0 chr11 47316297 47316325 -101467147 + L2 LINE L2 3223 3250 -22 1898 155 36 41 chr11 47316423 47316810 -101466662 - MLT1B LTR MaLR -5 385 1 1829 147 0 20 chr11 47317687 47317986 -101465486 + AluSx SINE Alu 1 293 -19 926 242 26 26 chr11 47318773 47319004 -101464468 - MIR SINE MIR -12 250 20 638 200 86 0 chr11 47319022 47319162 -101464310 + MER3 DNA MER1_type 45 196 -13 231 260 39 48 chr11 47319182 47319286 -101464186 + L1ME LINE L1 5522 5624 -497 449 300 67 22 chr11 47319324 47319504 -101463968 - MIR SINE MIR -46 216 29 236 195 0 0 chr11 47319845 47319886 -101463586 + MIR SINE MIR 116 156 -106 383 248 177 0 chr11 47320766 47320879 -101462593 - MIR SINE MIR -79 183 51 286 310 26 9 chr11 47321516 47321629 -101461843 - MIR3 SINE MIR -3 205 91 204 306 77 60 chr11 47322028 47322211 -101461261 - MIR SINE MIR -12 250 65 183 42 0 0 chr11 47322526 47322550 -101460922 + (T)n Simple_repeat Simple_repeat 1 24 0 600 284 0 6 chr11 47324232 47324394 -101459078 + MIR SINE MIR 38 198 -64 201 235 59 0 chr11 47324409 47324460 -101459012 - MIR SINE MIR -8 254 201 219 244 200 35 chr11 47324607 47324722 -101458750 + L2 LINE L2 3164 3297 -16 380 216 22 112 chr11 47325297 47325431 -101458041 - L2 LINE L2 -1 3271 3150 510 252 66 45 chr11 47325978 47326203 -101457269 + MIR SINE MIR 10 245 -17 356 293 40 0 chr11 47326228 47326327 -101457145 + L2 LINE L2 3143 3245 -27 256 236 0 0 chr11 47326337 47326392 -101457080 - L2 LINE L2 -1 3271 3217 22 0 0 0 chr11 47326405 47326427 -101457045 + AT_rich Low_complexity Low_complexity 1 22 0 183 198 87 119 chr11 47326707 47326833 -101456639 + MIR SINE MIR 106 227 -35 327 260 281 7 chr11 47326889 47327035 -101456437 + MER5A DNA MER1_type 4 189 0 193 219 148 26 chr11 47327035 47327121 -101456351 + MIR SINE MIR 68 160 -68 1604 155 30 26 chr11 47328022 47328325 -101455147 - AluJb SINE Alu -8 304 1 218 308 135 10 chr11 47328347 47328451 -101455021 - MIR SINE MIR -40 222 106 426 308 60 38 chr11 47328509 47328694 -101454778 - MIR SINE MIR -64 198 10 328 264 115 46 chr11 47328799 47328973 -101454499 - MLT1L LTR MaLR -9 606 421 386 304 34 27 chr11 47328976 47329124 -101454348 - L2 LINE L2 -21 3292 3144 235 213 41 49 chr11 47329124 47329160 -101454312 + (TATATG)n Simple_repeat Simple_repeat 2 37 -85 1537 185 52 73 chr11 47329160 47329528 -101453944 + MER46B DNA MER2_type 2 236 0 235 213 41 49 chr11 47329528 47329613 -101453859 + (TATATG)n Simple_repeat Simple_repeat 37 122 0 578 219 183 0 chr11 47329618 47329837 -101453635 - L2 LINE L2 -148 3165 2907 716 307 60 43 chr11 47329853 47330273 -101453199 - MLT1L LTR MaLR -186 429 3 906 238 93 21 chr11 47330946 47331236 -101452236 - MLT1K LTR MaLR -14 574 264 180 0 0 0 chr11 47331318 47331338 -101452134 + (GGGTG)n Simple_repeat Simple_repeat 2 21 0 330 264 71 50 chr11 47331713 47331819 -101451653 + MIR SINE MIR 32 143 -119 2124 145 49 22 chr11 47331819 47332184 -101451288 + THE1C LTR MaLR 1 375 0 330 264 71 50 chr11 47332184 47332217 -101451255 + MIR SINE MIR 143 174 -88 835 157 79 28 chr11 47332407 47332585 -101450887 + MER53 DNA DNA 1 187 -2 308 164 147 69 chr11 47333394 47333510 -101449962 + MIR SINE MIR 46 170 -92 1070 254 77 15 chr11 47333746 47334084 -101449388 - MLT1J LTR MaLR -152 359 1 1590 249 64 47 chr11 47334565 47335143 -101448329 - MLT1K LTR MaLR 0 588 1 466 232 88 16 chr11 47335272 47335397 -101448075 + MIR SINE MIR 16 149 -113 427 313 56 25 chr11 47336318 47336503 -101446969 + MIR SINE MIR 3 195 -62 830 196 98 5 chr11 47337759 47337953 -101445519 - LTR16C LTR ERVL -6 485 274 1345 209 64 72 chr11 47338339 47338713 -101444759 + MLT1A2 LTR MaLR 4 374 0 552 269 64 6 chr11 47338718 47338850 -101444622 + MIR SINE MIR 28 172 -90 1139 242 62 72 chr11 47338850 47339403 -101444069 - MLT1H LTR MaLR -2 547 1 552 269 64 6 chr11 47339403 47339426 -101444046 + MIR SINE MIR 172 192 -70 895 202 44 0 chr11 47341489 47341672 -101441800 + MER58A DNA MER1_type 34 224 0 719 227 187 5 chr11 47341692 47341890 -101441582 + MIR SINE MIR 17 250 -12 884 131 0 8 chr11 47341933 47342063 -101441409 - FLAM_C SINE Alu -4 129 1 228 265 0 0 chr11 47342147 47342196 -101441276 + MER5A DNA MER1_type 56 104 -85 228 179 0 0 chr11 47342318 47342357 -101441115 + MER81 DNA DNA 75 113 -1 303 250 35 35 chr11 47343193 47343309 -101440163 + MIR3 SINE MIR 15 130 -78 218 200 0 22 chr11 47344362 47344407 -101439065 + CT-rich Low_complexity Low_complexity 2 45 0 2136 174 28 48 chr11 47344460 47344897 -101438575 - MSTA LTR MaLR 0 428 1 532 276 37 8 chr11 47345870 47346004 -101437468 - MIR SINE MIR -78 184 47 645 283 79 17 chr11 47347320 47347560 -101435912 + L2 LINE L2 2815 3069 -244 3071 251 99 65 chr11 47347643 47347805 -101435667 - HAL1 LINE L1 -6 2501 2346 2167 105 0 0 chr11 47347805 47348081 -101435391 - AluSc SINE Alu -3 306 31 3071 251 99 65 chr11 47348081 47348654 -101434818 - HAL1 LINE L1 -161 2346 1794 913 244 57 0 chr11 47348654 47348863 -101434609 - MER58A DNA MER1_type -3 221 1 3071 251 99 65 chr11 47348863 47349998 -101433474 - HAL1 LINE L1 -713 1794 566 274 284 60 23 chr11 47350042 47350260 -101433212 - HAL1 LINE L1 -2172 335 110 493 264 0 16 chr11 47350568 47350697 -101432775 - L2 LINE L2 -3 3310 3184 196 158 53 0 chr11 47350841 47350879 -101432593 - L2 LINE L2 -345 2968 2929 1539 264 69 34 chr11 47350880 47351433 -101432039 - MLT1E LTR MaLR 0 593 22 1312 134 5 0 chr11 47351438 47351624 -101431848 - AluJo SINE Alu -9 303 117 28639 50 2 11 chr11 47351624 47355953 -101427519 - L1PA5 LINE L1 -14 6140 1855 2153 122 23 3 chr11 47355953 47356257 -101427215 + AluY SINE Alu 2 311 0 28639 50 2 11 chr11 47356257 47356524 -101426948 - L1PA5 LINE L1 -4299 1855 1587 1034 275 151 55 chr11 47357561 47358120 -101425352 - L2 LINE L2 -4 3309 2805 1671 183 26 20 chr11 47358120 47358426 -101425046 + AluJo SINE Alu 1 308 -4 1034 275 151 55 chr11 47358426 47358806 -101424666 - L2 LINE L2 -508 2805 2269 261 219 0 0 chr11 47358955 47359028 -101424444 + (CAT)n Simple_repeat Simple_repeat 3 75 0 217 226 0 29 chr11 47359119 47359221 -101424251 + (CACCAT)n Simple_repeat Simple_repeat 4 102 0 289 292 16 49 chr11 47359246 47359431 -101424041 + (CACCAT)n Simple_repeat Simple_repeat 2 180 0 1076 122 156 10 chr11 47359562 47359767 -101423705 + MLT2A1 LTR ERVL 178 412 -32 313 76 63 0 chr11 47359767 47359846 -101423626 + (TA)n Simple_repeat Simple_repeat 2 85 0 40423 67 3 5 chr11 47359892 47365111 -101418361 + HERVL-A1 LTR ERVL 1 5210 -444 253 262 36 33 chr11 47365234 47365379 -101418093 - MIR SINE MIR -14 248 56 288 270 0 0 chr11 47365915 47365978 -101417494 - MIR SINE MIR -3 259 197 398 134 227 52 chr11 47366372 47366469 -101417003 - MIR SINE MIR -58 204 91 300 247 146 0 chr11 47366794 47366883 -101416589 - L1ME4a LINE L1 -1 6120 6019 334 280 20 10 chr11 47367170 47367270 -101416202 - MIR SINE MIR -85 123 23 2064 146 17 0 chr11 47367316 47367617 -101415855 + AluSx SINE Alu 3 308 -4 1144 194 43 17 chr11 47367636 47367868 -101415604 - MIR SINE MIR -10 252 15 248 323 0 0 chr11 47367974 47368039 -101415433 - MIR SINE MIR -110 98 34 227 255 255 0 chr11 47368699 47368793 -101414679 - L2 LINE L2 0 3272 3155 636 278 172 18 chr11 47369186 47369413 -101414059 - MIR SINE MIR 0 262 1 222 227 36 118 chr11 47369663 47369773 -101413699 - MIR SINE MIR -72 136 36 394 328 66 12 chr11 47371031 47371287 -101412185 + L2 LINE L2 2687 2956 -358 451 202 39 19 chr11 47371966 47372070 -101411402 + MIR SINE MIR 51 156 -106 2282 88 0 3 chr11 47372203 47372486 -101410986 - AluSq SINE Alu -10 303 22 647 248 164 26 chr11 47372741 47372967 -101410505 - MIR SINE MIR -1 261 5 204 280 93 27 chr11 47373050 47373125 -101410347 + MER91C DNA MER1_type 25 104 -36 248 268 29 72 chr11 47373726 47373864 -101409608 - MER113 DNA MER1_type? -40 481 350 313 188 34 17 chr11 47374037 47374137 -101409335 - MIR SINE MIR -87 121 19 * 1100 248 115 49 chr11 47374092 47374558 -101408914 + L2 LINE L2 2798 3312 -1 755 188 40 97 chr11 47374561 47374668 -101408804 - MER113 DNA MER1_type? -221 300 188 2511 80 0 3 chr11 47374668 47374979 -101408493 - AluY SINE Alu -1 310 1 755 188 40 97 chr11 47374979 47375041 -101408431 - MER113 DNA MER1_type? -333 188 124 1787 163 0 37 chr11 47375041 47375341 -101408131 - AluJb SINE Alu -22 290 2 755 188 40 97 chr11 47375341 47375468 -101408004 - MER113 DNA MER1_type? -397 124 20 333 331 45 8 chr11 47375490 47375623 -101407849 - MIR SINE MIR -55 153 16 225 356 33 0 chr11 47375732 47375822 -101407650 + L2 LINE L2 3221 3313 0 255 214 32 135 chr11 47376558 47376684 -101406788 - MIR SINE MIR -80 128 16 181 309 0 0 chr11 47376792 47376847 -101406625 + MIR SINE MIR 113 167 -95 297 345 18 9 chr11 47377429 47377542 -101405930 - MIR SINE MIR -58 150 37 4127 147 8 2 chr11 47377676 47378307 -101405165 + MER41B LTR ERV1 1 635 0 2225 79 55 7 chr11 47378765 47379056 -101404416 - AluSx SINE Alu -7 305 1 384 226 43 13 chr11 47379721 47379830 -101403642 + MIR SINE MIR 11 121 -87 346 276 47 24 chr11 47380049 47380176 -101403296 - MIR3 SINE MIR -77 131 2 1699 120 33 7 chr11 47381342 47381616 -101401856 + MLT2A1 LTR ERVL 124 404 -40 24 0 0 0 chr11 47381616 47381640 -101401832 + AT_rich Low_complexity Low_complexity 1 24 0 788 49 64 23 chr11 47381640 47381985 -101401487 + (TA)n Simple_repeat Simple_repeat 1 360 0 264 155 35 17 chr11 47381997 47382055 -101401417 + MLT2A1 LTR ERVL 386 444 0 * 543 240 40 72 chr11 47382055 47382207 -101401265 + MER2 DNA MER2_type 107 250 -95 1933 136 20 3 chr11 47382207 47382502 -101400970 - AluSx SINE Alu -12 300 1 543 240 40 72 chr11 47382502 47382596 -101400876 + MER2 DNA MER2_type 250 345 0 305 337 0 0 chr11 47382597 47382680 -101400792 + (CAG)n Simple_repeat Simple_repeat 1 83 0 216 235 0 0 chr11 47382784 47382852 -101400620 + (ATG)n Simple_repeat Simple_repeat 1 68 0 389 216 0 53 chr11 47382885 47383075 -101400397 + (ATGGTG)n Simple_repeat Simple_repeat 1 180 0 481 271 8 45 chr11 47383150 47383283 -101400189 - MLT1J LTR MaLR -160 351 224 529 152 0 29 chr11 47383361 47383466 -101400006 - L1PB1 LINE L1 -1 6150 6049 1355 212 40 72 chr11 47383937 47384314 -101399158 + MLT1A1 LTR MaLR 1 365 0 610 305 14 24 chr11 47384415 47384628 -101398844 - MLT1A2 LTR MaLR -163 211 1 2280 107 7 0 chr11 47385132 47385442 -101398030 + AluSx SINE Alu 1 312 0 1917 225 8 0 chr11 47385621 47385981 -101397491 + MLT1A1 LTR MaLR 1 363 -2 204 164 66 0 chr11 47386021 47386082 -101397390 + (TA)n Simple_repeat Simple_repeat 2 66 0 288 263 141 10 chr11 47386093 47386192 -101397280 + L2 LINE L2 3195 3306 -7 739 306 32 45 chr11 47386377 47386745 -101396727 + MLT1I LTR MaLR 56 389 -20 1993 128 0 20 chr11 47387136 47387440 -101396032 - AluSx SINE Alu -9 303 6 2286 96 0 0 chr11 47387446 47387749 -101395723 - AluSx SINE Alu -9 303 1 241 191 32 85 chr11 47387976 47388070 -101395402 - MIR SINE MIR -76 132 44 650 265 60 71 chr11 47388217 47388485 -101394987 - MER102a DNA MER1_type -3 327 63 645 165 118 0 chr11 47388691 47388818 -101394654 + Tigger1 DNA MER2_type 1 142 -2276 1920 130 17 7 chr11 47388833 47389126 -101394346 - AluSx SINE Alu -16 296 1 1003 151 38 5 chr11 47389137 47389322 -101394150 + Tigger1 DNA MER2_type 2227 2417 -1 35 54 0 0 chr11 47389467 47389523 -101393949 + AT_rich Low_complexity Low_complexity 1 56 0 2004 127 0 10 chr11 47389530 47389855 -101393617 + AluSx SINE Alu 1 312 0 372 237 119 25 chr11 47390823 47390941 -101392531 + MIR SINE MIR 65 193 -69 2056 116 0 10 chr11 47391049 47391351 -101392121 + AluSc SINE Alu 1 299 -10 1696 265 161 6 chr11 47391516 47392025 -101391447 + MLT1G1 LTR MaLR 1 588 -7 971 166 195 23 chr11 47392515 47392837 -101390635 + MSTC LTR MaLR 1 425 -3 186 241 190 0 chr11 47392852 47392910 -101390562 - L2 LINE L2 -3 3310 3242 1644 284 65 35 chr11 47392939 47393039 -101390433 + MER115 DNA AcHobo 118 213 -480 1813 138 7 0 chr11 47393039 47393365 -101390107 - AluJb SINE Alu 0 328 1 1644 284 65 35 chr11 47393365 47393813 -101389659 + MER115 DNA AcHobo 213 684 -9 2759 121 4 74 chr11 47394085 47394572 -101388900 - LTR32 LTR ERVL -5 466 14 402 98 49 0 chr11 47394699 47394760 -101388712 + MER5A DNA MER1_type 1 64 -125 229 345 12 48 chr11 47394891 47395056 -101388416 - MIR SINE MIR -10 252 94 777 196 113 0 chr11 47395141 47395309 -101388163 - MER5A DNA MER1_type 0 189 3 403 296 72 13 chr11 47395822 47395974 -101387498 + MIR SINE MIR 102 262 0 345 359 155 8 chr11 47397842 47398087 -101385385 - L3 LINE CR1 -2 1575 1295 531 360 116 11 chr11 47398300 47398653 -101384819 - L1ME4a LINE L1 -100 6021 5632 1028 148 28 6 chr11 47399073 47399255 -101384217 - MER5A DNA MER1_type 0 189 4 249 354 61 0 chr11 47399464 47399563 -101383909 - MIR SINE MIR -56 152 48 582 279 66 6 chr11 47399886 47400069 -101383403 - MIR SINE MIR -12 250 57 281 304 16 16 chr11 47400230 47400355 -101383117 + MIR SINE MIR 20 144 -64 250 292 71 91 chr11 47400411 47400565 -101382907 - MIR SINE MIR -71 191 41 292 337 88 26 chr11 47401211 47401404 -101382068 + MIR SINE MIR 51 255 -7 315 174 47 47 chr11 47401591 47401677 -101381795 + MIR SINE MIR 63 148 -114 264 288 160 24 chr11 47403986 47404081 -101379391 - MIR SINE MIR -84 178 61 1903 135 51 0 chr11 47404081 47404377 -101379095 + AluSx SINE Alu 1 311 -1 264 288 160 24 chr11 47404377 47404406 -101379066 - MIR SINE MIR -201 61 37 642 283 72 32 chr11 47404851 47405102 -101378370 + MIR SINE MIR 2 262 0 188 290 87 14 chr11 47405168 47405237 -101378235 + L2 LINE L2 3105 3178 -94 198 309 83 12 chr11 47405552 47405636 -101377836 - MER5A DNA MER1_type -43 146 57 309 311 76 23 chr11 47406137 47406269 -101377203 - MIR3 SINE MIR -67 141 3 250 215 89 0 chr11 47406660 47406739 -101376733 + MIR3 SINE MIR 101 186 -22 449 239 104 2 chr11 47407270 47407396 -101376076 + MIR SINE MIR 31 167 -41 476 269 36 42 chr11 47407750 47407917 -101375555 - MIR SINE MIR -50 212 47 2192 109 0 3 chr11 47407918 47408221 -101375251 - AluSq SINE Alu -9 304 3 180 0 0 0 chr11 47408907 47408927 -101374545 + (CAT)n Simple_repeat Simple_repeat 2 21 0 474 226 195 19 chr11 47408934 47409093 -101374379 - MIR SINE MIR -10 252 66 689 249 67 0 chr11 47409737 47409902 -101373570 + MER5B DNA MER1_type 1 176 -2 1182 186 31 22 chr11 47410076 47410302 -101373170 + AluJb SINE Alu 61 288 -24 480 292 15 7 chr11 47410466 47410603 -101372869 - L2 LINE L2 -15 3298 3161 226 237 274 22 chr11 47410642 47410777 -101372695 - MER5B DNA MER1_type -9 169 1 184 284 123 76 chr11 47410779 47410990 -101372482 - L2 LINE L2 -247 3066 2846 234 219 0 0 chr11 47411562 47411626 -101371846 + (TCCA)n Simple_repeat Simple_repeat 1 64 0 1745 72 0 5 chr11 47411975 47412196 -101371276 - AluY SINE Alu -90 221 2 621 215 50 82 chr11 47412250 47412391 -101371081 - MER58 DNA MER1_type 0 2420 2276 2310 80 3 13 chr11 47412391 47412702 -101370770 + AluY SINE Alu 1 308 -3 621 215 50 82 chr11 47412702 47412779 -101370693 - MER58 DNA MER1_type -144 2276 4 208 209 93 23 chr11 47413299 47413385 -101370087 + MIR SINE MIR 35 126 -136 394 205 154 0 chr11 47413677 47413794 -101369678 + MIR SINE MIR 50 184 -78 2186 93 20 0 chr11 47413881 47414183 -101369289 - AluSq SINE Alu -5 308 1 340 317 97 0 chr11 47414885 47415030 -101368442 - L3 LINE CR1 -31 1546 1388 226 217 33 171 chr11 47415069 47415221 -101368251 + L3 LINE CR1 1369 1499 -78 344 231 131 31 chr11 47415918 47416048 -101367424 + L1ME4a LINE L1 5789 5931 -190 198 0 0 0 chr11 47416059 47416081 -101367391 + (CA)n Simple_repeat Simple_repeat 2 23 0 332 264 124 25 chr11 47416085 47416206 -101367266 + L1ME4a LINE L1 5983 6115 -6 252 0 0 0 chr11 47416453 47416481 -101366991 + (CCCCAG)n Simple_repeat Simple_repeat 3 30 0 461 279 41 0 chr11 47416551 47416673 -101366799 + MIR SINE MIR 71 197 -65 483 273 176 10 chr11 47417559 47417764 -101365708 + L1ME4a LINE L1 5865 6103 -18 891 148 0 15 chr11 47417852 47417987 -101365485 + FLAM_C SINE Alu 1 133 0 438 196 9 54 chr11 47420199 47420311 -101363161 - MER96B DNA MER1_type? -187 230 124 1837 104 11 0 chr11 47420311 47420571 -101362901 - AluSq SINE Alu -1 312 50 1479 164 34 7 chr11 47421085 47421354 -101362118 - AluJb SINE Alu -36 276 1 383 259 71 67 chr11 47421438 47421662 -101361810 - L2 LINE L2 -56 3216 2992 213 340 10 20 chr11 47422424 47422524 -101360948 + MIR SINE MIR 86 184 -78 704 274 75 5 chr11 47422626 47422838 -101360634 - MIR SINE MIR -4 258 32 360 259 14 61 chr11 47423630 47423777 -101359695 - MER5B DNA MER1_type -38 140 1 214 257 0 27 chr11 47423803 47423877 -101359595 - MIR SINE MIR -76 132 61 589 259 14 0 chr11 47423931 47424070 -101359402 - MIR SINE MIR -109 153 13 699 263 60 35 chr11 47424137 47424369 -101359103 + MIR SINE MIR 20 257 -5 312 281 187 6 chr11 47424387 47424543 -101358929 - MIR3 SINE MIR -63 145 8 208 387 58 0 chr11 47424770 47424943 -101358529 + MIR SINE MIR 48 230 -32 875 292 115 11 chr11 47425756 47426198 -101357274 + L2 LINE L2 2825 3312 -1 231 290 131 41 chr11 47426301 47426446 -101357026 + MIR SINE MIR 104 261 -1 470 265 57 73 chr11 47426533 47426778 -101356694 - L2 LINE L2 -8 3305 3065 687 270 52 24 chr11 47427543 47427754 -101355718 + MIR SINE MIR 46 262 0 257 276 0 13 chr11 47427973 47428049 -101355423 - MLT1L LTR MaLR -186 429 355 1370 147 103 15 chr11 47428124 47428397 -101355075 + AluJb SINE Alu 6 302 -10 324 290 14 41 chr11 47429581 47429726 -101353746 - MIR3 SINE MIR -65 143 3 296 272 43 0 chr11 47430422 47430514 -101352958 + MIR SINE MIR 59 154 -108 615 252 129 24 chr11 47430515 47430725 -101352747 + MER46C DNA MER2_type 2 233 -105 340 284 10 10 chr11 47431050 47431152 -101352320 + MIR SINE MIR 23 124 -84 230 319 28 0 chr11 47431920 47431992 -101351480 + L3 LINE CR1 427 500 -1077 406 296 158 71 chr11 47432107 47432173 -101351299 + L3 LINE CR1 1233 1292 -285 234 173 0 58 chr11 47432173 47432225 -101351247 + Alu SINE Alu 155 203 -97 406 296 158 71 chr11 47432225 47432418 -101351054 + L3 LINE CR1 1292 1570 -7 412 287 23 8 chr11 47432523 47432652 -101350820 + MIR SINE MIR 16 146 -116 546 164 253 34 chr11 47432670 47432738 -101350734 + MER45A DNA AcHobo 1 53 -1528 2179 134 0 0 chr11 47432738 47433044 -101350428 - AluSx SINE Alu -6 306 1 546 164 253 34 chr11 47433044 47433121 -101350351 + MER45A DNA AcHobo 53 178 0 249 273 105 14 chr11 47433339 47433482 -101349990 - MLT1K LTR MaLR -354 234 79 215 290 194 11 chr11 47433997 47434090 -101349382 + MIR SINE MIR 16 125 -137 892 284 11 23 chr11 47434121 47434385 -101349087 + MIR SINE MIR 2 262 0 23 0 0 0 chr11 47434445 47434468 -101349004 + AT_rich Low_complexity Low_complexity 1 23 0 2111 115 0 16 chr11 47434533 47434846 -101348626 - AluY SINE Alu -3 308 1 1751 170 7 0 chr11 47435451 47435763 -101347709 + AluSx SINE Alu 1 314 0 1161 129 0 0 chr11 47435911 47436081 -101347391 - AluSg/x SINE Alu 0 312 143 1257 270 63 48 chr11 47436351 47437012 -101346460 - L2 LINE L2 -7 3306 2647 409 312 83 10 chr11 47437605 47437810 -101345662 + L1ME3 LINE L1 5940 6159 -3 237 132 0 0 chr11 47437818 47437856 -101345616 + (TGGA)n Simple_repeat Simple_repeat 3 40 0 198 291 188 8 chr11 47438515 47438632 -101344840 + MIR SINE MIR 98 235 -27 2374 74 0 0 chr11 47439198 47439494 -101343978 + AluSx SINE Alu 11 306 -6 673 272 87 28 chr11 47439603 47439830 -101343642 - MIR SINE MIR -24 238 6 258 193 227 84 chr11 47440768 47440887 -101342585 + MIR SINE MIR 71 152 -56 2510 42 3 10 chr11 47441392 47441701 -101341771 + AluY SINE Alu 1 307 -4 1877 128 7 0 chr11 47442732 47443005 -101340467 + AluSx SINE Alu 36 310 -2 247 302 81 12 chr11 47443327 47443413 -101340059 - MER5A DNA MER1_type -37 152 61 193 317 79 0 chr11 47443334 47443435 -101340037 + MER5A DNA MER1_type 54 162 -27 * 223 292 15 0 chr11 47443691 47443756 -101339716 + MIR SINE MIR 32 97 -111 278 250 23 34 chr11 47443857 47443945 -101339527 - MIR SINE MIR -163 99 13 183 80 0 0 chr11 47445134 47445159 -101338313 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 386 257 37 9 chr11 47445162 47445271 -101338201 - L2 LINE L2 -13 3300 3189 223 263 0 26 chr11 47445307 47445383 -101338089 + (CA)n Simple_repeat Simple_repeat 2 75 0 205 340 120 0 chr11 47445623 47445723 -101337749 + MIR SINE MIR 102 213 -49 2110 139 35 41 chr11 47446500 47446866 -101336606 - THE1B LTR MaLR 0 364 1 221 330 58 29 chr11 47447155 47447258 -101336214 - MIR SINE MIR -63 199 94 345 250 142 25 chr11 47447495 47447615 -101335857 - L2 LINE L2 0 3272 3139 1774 207 130 51 chr11 47448418 47448925 -101334547 + MLT1H LTR MaLR 1 547 -2 612 299 31 59 chr11 47448939 47449193 -101334279 - MIR SINE MIR 0 262 16 214 195 0 0 chr11 47449438 47449479 -101333993 - L2 LINE L2 -4 3268 3228 395 328 24 31 chr11 47449527 47449719 -101333753 - MIR SINE MIR -62 146 9 292 226 10 78 chr11 47450419 47450521 -101332951 + MIR SINE MIR 50 144 -64 270 291 47 11 chr11 47450637 47450735 -101332737 - MIR SINE MIR -90 118 16 419 228 53 9 chr11 47451120 47451234 -101332238 + MIR SINE MIR 108 226 -36 517 293 15 8 chr11 47451750 47451883 -101331589 + L2 LINE L2 3180 3313 0 306 276 6 104 chr11 47451999 47452097 -101331375 + MER5A DNA MER1_type 43 120 -69 2088 95 3 50 chr11 47452097 47452414 -101331058 - AluSp SINE Alu -11 302 1 306 276 6 104 chr11 47452414 47452478 -101330994 + MER5A DNA MER1_type 120 189 0 2407 85 3 0 chr11 47453214 47453521 -101329951 - AluSp SINE Alu -5 308 1 356 281 62 34 chr11 47453636 47453782 -101329690 + L2 LINE L2 3123 3272 0 206 339 48 24 chr11 47454073 47454197 -101329275 - L2 LINE L2 -842 2472 2346 1801 153 32 62 chr11 47454984 47455039 -101328433 - MER46B DNA MER2_type -2495 236 181 180 0 0 0 chr11 47455039 47455059 -101328413 + (TA)n Simple_repeat Simple_repeat 2 21 0 1981 130 0 3 chr11 47455059 47455343 -101328129 - AluSq SINE Alu -28 285 3 1801 153 32 62 chr11 47455343 47455658 -101327814 - MER46B DNA MER2_type -2548 183 1 25 31 0 0 chr11 47455962 47455994 -101327478 + AT_rich Low_complexity Low_complexity 1 32 0 354 278 78 17 chr11 47456080 47456195 -101327277 + L2 LINE L2 3180 3301 -12 294 274 150 9 chr11 47456920 47457033 -101326439 + MIR SINE MIR 37 165 -97 497 281 8 8 chr11 47557861 47557982 -101225490 + MIR SINE MIR 32 152 -110 191 200 35 12 chr11 47558040 47558125 -101225347 + CT-rich Low_complexity Low_complexity 1 87 0 233 200 75 50 chr11 47558163 47558243 -101225229 - MIR SINE MIR -58 204 123 183 80 0 0 chr11 47558420 47558445 -101225027 + (TCCCC)n Simple_repeat Simple_repeat 5 29 0 * 671 205 0 6 chr11 47558442 47558603 -101224869 + CT-rich Low_complexity Low_complexity 3 162 0 219 326 74 15 chr11 47559550 47559685 -101223787 + MIR SINE MIR 13 155 -107 22 70 0 0 chr11 47560115 47560158 -101223314 + AT_rich Low_complexity Low_complexity 1 43 0 389 252 87 24 chr11 47560636 47560763 -101222709 + MIR3 SINE MIR 7 141 -67 491 249 35 30 chr11 47561012 47561181 -101222291 + MER117 DNA MER1_type 4 173 -24 795 230 47 29 chr11 47561616 47561894 -101221578 + L1ME3A LINE L1 5880 6162 -8 2577 50 0 0 chr11 47561920 47562220 -101221252 + AluY SINE Alu 1 300 -11 297 256 194 8 chr11 47562242 47562371 -101221101 + Charlie8 DNA MER1_type 92 244 -2173 444 291 30 22 chr11 47562514 47562648 -101220824 + MIR SINE MIR 45 179 -83 1782 151 14 21 chr11 47562655 47562940 -101220532 + AluJo SINE Alu 9 291 -21 260 279 35 12 chr11 47563550 47563636 -101219836 + MIR SINE MIR 96 183 -79 336 238 32 71 chr11 47564134 47564260 -101219212 + MIR SINE MIR 25 145 -63 2068 134 34 0 chr11 47564300 47564591 -101218881 + AluSx SINE Alu 1 301 -11 483 350 25 20 chr11 47565090 47565290 -101218182 - MIR SINE MIR -53 209 9 435 356 77 0 chr11 47565323 47565517 -101217955 + MIR SINE MIR 13 221 -41 2613 62 0 0 chr11 47565803 47566110 -101217362 - AluY SINE Alu -4 307 1 246 213 0 0 chr11 47566267 47566314 -101217158 - MIR SINE MIR -71 137 91 287 214 0 0 chr11 47567015 47567071 -101216401 - MIR SINE MIR -88 120 65 462 260 147 17 chr11 47567512 47567689 -101215783 + MIR SINE MIR 26 225 -37 2125 122 0 30 chr11 47567815 47568118 -101215354 + AluSx SINE Alu 6 299 -13 1067 169 52 28 chr11 47568205 47568550 -101214922 + LTR54 LTR ERV1 1 407 -103 428 171 0 0 chr11 47568552 47568628 -101214844 - AluJ/FRAM SINE Alu -8 304 229 502 100 64 18 chr11 47568628 47568738 -101214734 + LTR54B LTR ERV1 382 496 -2 219 323 0 0 chr11 47568741 47568806 -101214666 + (TATATG)n Simple_repeat Simple_repeat 4 68 0 959 212 60 34 chr11 47568806 47569224 -101214248 - LTR37B LTR ERV1 0 468 1 2289 93 0 17 chr11 47569304 47569604 -101213868 - AluSg SINE Alu -15 295 1 304 187 0 22 chr11 47572100 47572191 -101211281 + GA-rich Low_complexity Low_complexity 1 89 0 213 39 0 0 chr11 47572478 47572504 -101210968 + (GGGA)n Simple_repeat Simple_repeat 2 27 0 2649 181 19 14 chr11 47572562 47573082 -101210390 - L1MB3 LINE L1 0 6183 5661 696 171 28 40 chr11 47573091 47573267 -101210205 - L1MB3 LINE L1 -2061 4085 3912 * 1660 125 33 116 chr11 47573257 47573514 -101209958 - L1M3 LINE L1 -513 5667 5390 229 147 0 0 chr11 47573514 47573548 -101209924 - U2 snRNA snRNA -153 35 2 1731 178 0 14 chr11 47573548 47573860 -101209612 - AluJb SINE Alu 0 308 1 1660 125 33 116 chr11 47573860 47574227 -101209245 - L1M3 LINE L1 -788 5392 5067 * 2295 187 21 23 chr11 47574222 47574736 -101208736 - L1M3 LINE L1 -1995 4151 3639 627 321 25 25 chr11 47574797 47575040 -101208432 - MIR SINE MIR -16 246 4 311 299 11 34 chr11 47575731 47575908 -101207564 + (TCCA)n Simple_repeat Simple_repeat 4 176 0 284 355 55 51 chr11 47575945 47576162 -101207310 - L2 LINE L2 -86 3186 2969 442 231 0 0 chr11 47576612 47576720 -101206752 + L1ME3A LINE L1 6055 6162 -8 486 230 23 58 chr11 47576947 47577121 -101206351 + MER104 DNA Tc2 3 170 -10 408 331 45 6 chr11 47577130 47577308 -101206164 - MIR SINE MIR -27 235 51 246 261 0 15 chr11 47578424 47578489 -101204983 + L1P4 LINE L1 5766 5829 -345 184 83 0 0 chr11 47578748 47578772 -101204700 - MIR SINE MIR -156 106 83 282 29 0 0 chr11 47578787 47578822 -101204650 + (TG)n Simple_repeat Simple_repeat 2 36 0 323 0 0 0 chr11 47579088 47579125 -101204347 - tRNA-Val-GTG tRNA tRNA -39 37 1 391 238 115 25 chr11 47579175 47579297 -101204175 + MIR SINE MIR 43 175 -87 2393 131 47 47 chr11 47580020 47580448 -101203024 - MSTA LTR MaLR 0 428 1 359 248 159 19 chr11 47581281 47581438 -101202034 + MIR3 SINE MIR 30 208 0 528 260 52 49 chr11 47581643 47581889 -101201583 - MIR SINE MIR -6 256 14 249 343 89 0 chr11 47582019 47582165 -101201307 + MIR SINE MIR 88 246 -16 550 289 26 7 chr11 47582965 47583117 -101200355 + MIR SINE MIR 28 182 -80 372 182 71 0 chr11 47583147 47583246 -101200226 + MARNA DNA Mariner 432 537 -49 7143 205 35 41 chr11 47583787 47585063 -101198409 - L1M4 LINE L1 -1002 5144 3867 2285 110 3 7 chr11 47585063 47585364 -101198108 - AluSg1 SINE Alu -9 300 1 7143 205 35 41 chr11 47585364 47586069 -101197403 - L1M4 LINE L1 -2279 3867 3159 231 316 60 45 chr11 47586074 47586207 -101197265 + MIR SINE MIR 48 182 -80 1557 268 99 22 chr11 47586230 47587329 -101196143 - L2 LINE L2 0 3313 2133 180 0 0 0 chr11 47587509 47587529 -101195943 + (TTCA)n Simple_repeat Simple_repeat 4 23 0 1021 197 249 47 chr11 47587765 47587789 -101195683 - MLT2B1 LTR ERVL -37 483 465 867 199 238 32 chr11 47587789 47588071 -101195401 - MER2 DNA MER2_type -4 340 1 1021 197 249 47 chr11 47588071 47588407 -101195065 - MLT2B1 LTR ERVL -55 465 50 612 260 79 16 chr11 47588414 47588668 -101194804 - MER97c DNA MER1_type? -11 1079 810 452 167 130 0 chr11 47588683 47588791 -101194681 + MER2 DNA MER2_type 54 175 -170 2174 116 10 0 chr11 47588816 47589119 -101194353 - AluSp SINE Alu -1 312 7 1358 229 83 37 chr11 47589137 47589303 -101194169 - MER97a DNA MER1_type? -498 396 239 2501 80 3 10 chr11 47589303 47589614 -101193858 + AluSp SINE Alu 1 309 -4 1358 229 83 37 chr11 47589614 47589822 -101193650 - MER97a DNA MER1_type? -655 239 5 255 270 0 32 chr11 47590785 47590848 -101192624 + polypyrimidine Low_complexity Low_complexity 2 62 0 754 163 10 74 chr11 47591284 47591486 -101191986 + MER53 DNA DNA 1 189 0 241 270 67 0 chr11 47592404 47592493 -101190979 - MIR SINE MIR -65 143 49 292 306 145 0 chr11 47592513 47592637 -101190835 + MIR SINE MIR 46 187 -75 440 261 121 13 chr11 47592781 47592938 -101190534 + MIR SINE MIR 12 185 -77 211 333 0 0 chr11 47593989 47594055 -101189417 - L2 LINE L2 -5 3308 3243 258 267 175 17 chr11 47594521 47594641 -101188831 - MER117 DNA MER1_type -28 169 31 276 298 0 36 chr11 47594726 47594810 -101188662 + MIR3 SINE MIR 108 188 -20 225 253 0 63 chr11 47595807 47595902 -101187570 + (CATA)n Simple_repeat Simple_repeat 1 89 0 220 241 19 0 chr11 47596605 47596659 -101186813 + (TTCA)n Simple_repeat Simple_repeat 2 56 0 274 271 57 57 chr11 47596810 47596950 -101186522 + MIR SINE MIR 32 171 -91 3149 211 50 30 chr11 47597877 47598427 -101185045 - L1ME2 LINE L1 -9 6155 5617 2354 101 10 3 chr11 47598427 47598734 -101184738 + AluSg SINE Alu 1 309 -1 3149 211 50 30 chr11 47598734 47598997 -101184475 - L1ME2 LINE L1 -547 5617 5318 2112 126 10 0 chr11 47598997 47599290 -101184182 - AluSx SINE Alu -16 296 1 3149 211 50 30 chr11 47599290 47599351 -101184121 - L1ME2 LINE L1 -846 5318 5260 760 202 75 5 chr11 47599341 47599529 -101183943 + L1ME2 LINE L1 5033 5233 -913 * 2544 78 0 0 chr11 47599553 47599859 -101183613 - AluSg SINE Alu -4 306 1 223 374 0 10 chr11 47600037 47600136 -101183336 + L2 LINE L2 2959 3056 -257 279 345 21 28 chr11 47600751 47600896 -101182576 + L2 LINE L2 3168 3311 -2 303 328 25 8 chr11 47600922 47601044 -101182428 - MIR3 SINE MIR -40 168 45 401 325 74 0 chr11 47602060 47602223 -101181249 + MIR SINE MIR 68 242 -20 210 184 0 0 chr11 47602380 47602418 -101181054 - MIR SINE MIR -114 148 111 2328 98 7 0 chr11 47602785 47603090 -101180382 - AluSq SINE Alu -4 309 3 658 260 115 5 chr11 47603342 47603542 -101179930 - MIR SINE MIR -18 244 23 468 271 56 0 chr11 47603724 47603868 -101179604 + MIR SINE MIR 103 254 -8 236 200 67 0 chr11 47604157 47604202 -101179270 - MIR SINE MIR -91 171 124 623 219 163 0 chr11 47604409 47604587 -101178885 + MER3 DNA MER1_type 3 209 0 2112 120 30 0 chr11 47604605 47604905 -101178567 - AluSg SINE Alu -1 309 1 308 277 129 0 chr11 47605570 47605686 -101177786 + MIR SINE MIR 63 192 -67 663 220 0 0 chr11 47606303 47606476 -101176996 + (TG)n Simple_repeat Simple_repeat 1 173 0 665 226 3 0 chr11 47606492 47606783 -101176689 + (TG)n Simple_repeat Simple_repeat 1 292 0 277 222 48 0 chr11 47606919 47606982 -101176490 + MIR SINE MIR 109 174 -88 395 266 86 16 chr11 47608077 47608205 -101175267 - L2 LINE L2 0 3272 3136 22 0 0 0 chr11 47608258 47608280 -101175192 + AT_rich Low_complexity Low_complexity 1 22 0 311 286 40 76 chr11 47608854 47609078 -101174394 - L2 LINE L2 -229 3043 2828 477 178 33 0 chr11 47609276 47609366 -101174106 - AluSp SINE Alu -95 218 126 329 256 12 0 chr11 47609581 47609663 -101173809 + MER81 DNA DNA 1 83 -31 351 247 0 12 chr11 47609702 47609783 -101173689 + MIR SINE MIR 107 186 -76 198 191 0 0 chr11 47610457 47610504 -101172968 + (TG)n Simple_repeat Simple_repeat 2 48 0 2224 121 0 0 chr11 47610541 47610838 -101172634 + AluSx SINE Alu 1 297 -15 695 249 46 50 chr11 47610841 47611082 -101172390 + MIR SINE MIR 21 260 -2 216 0 0 0 chr11 47611225 47611249 -101172223 + (CCCCCA)n Simple_repeat Simple_repeat 2 25 0 329 282 78 14 chr11 47611486 47611628 -101171844 + MIR SINE MIR 15 165 -97 236 270 40 14 chr11 47611639 47611713 -101171759 - L2 LINE L2 -650 2664 2589 185 335 25 80 chr11 47612732 47612932 -101170540 - MIR3 SINE MIR -5 203 15 224 302 63 71 chr11 47613321 47613447 -101170025 - MIR SINE MIR -66 196 72 493 264 14 14 chr11 47614037 47614185 -101169287 - MER103 DNA DNA -11 155 8 585 230 40 88 chr11 47614388 47614662 -101168810 - MIR SINE MIR -1 261 1 706 194 48 6 chr11 47615800 47615965 -101167507 - MIR SINE MIR -82 180 9 2177 98 0 66 chr11 47615989 47616306 -101167166 - AluSx SINE Alu -16 296 1 309 299 37 19 chr11 47616433 47616540 -101166932 - MIR SINE MIR -63 145 37 244 296 141 0 chr11 47617186 47617257 -101166215 + MER2 DNA MER2_type 1 81 -264 257 242 61 0 chr11 47617310 47617376 -101166096 + L1MC5 LINE L1 7838 7907 -54 300 333 118 0 chr11 47617519 47617654 -101165818 + L2 LINE L2 3122 3272 0 419 301 70 0 chr11 47617757 47617900 -101165572 + MIR SINE MIR 12 164 -98 1907 145 3 3 chr11 47617910 47618192 -101165280 + AluJb SINE Alu 12 293 -19 674 265 137 23 chr11 47618377 47618683 -101164789 - L2 LINE L2 -342 2972 2632 288 0 0 0 chr11 47618759 47618791 -101164681 + (CA)n Simple_repeat Simple_repeat 1 32 0 280 335 102 42 chr11 47619151 47619485 -101163987 - L2 LINE L2 -2 3270 2917 255 254 18 107 chr11 47620199 47620244 -101163228 + L2 LINE L2 3155 3202 -111 2278 73 37 27 chr11 47620244 47620544 -101162928 - AluSg SINE Alu -7 303 1 255 254 18 107 chr11 47620544 47620667 -101162805 + L2 LINE L2 3202 3308 -5 234 150 0 0 chr11 47620668 47620708 -101162764 + (GGGA)n Simple_repeat Simple_repeat 1 40 0 1475 222 86 9 chr11 47621767 47622186 -101161286 - MLT1C LTR MaLR 0 467 17 2334 100 17 0 chr11 47622188 47622489 -101160983 - AluSx SINE Alu -6 306 1 635 214 8 0 chr11 47623231 47623362 -101160110 + FLAM_C SINE Alu 2 133 0 2363 113 6 0 chr11 47623383 47623694 -101159778 + AluSq SINE Alu 1 313 0 405 291 16 31 chr11 47623806 47623933 -101159539 + MIR SINE MIR 15 139 -123 632 241 98 15 chr11 47624238 47624441 -101159031 - MIR SINE MIR -14 248 29 608 267 134 17 chr11 47625107 47625339 -101158133 - MIR SINE MIR -2 260 2 183 271 21 0 chr11 47625474 47625522 -101157950 + L2 LINE L2 3189 3237 -35 252 278 238 8 chr11 47625879 47626005 -101157467 + MIR SINE MIR 102 256 -6 252 314 116 0 chr11 47626076 47626197 -101157275 - MIR SINE MIR -117 145 11 2324 188 80 0 chr11 47626271 47626730 -101156742 - L1MB5 LINE L1 -8 6166 5665 1950 140 10 32 chr11 47626730 47627044 -101156428 - AluJb SINE Alu -5 307 1 2324 188 80 0 chr11 47627044 47627069 -101156403 - L1MB5 LINE L1 -509 5665 5643 378 0 0 0 chr11 47627261 47627303 -101156169 + (CA)n Simple_repeat Simple_repeat 2 43 0 213 39 0 0 chr11 47627402 47627428 -101156044 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2424 90 0 7 chr11 47627588 47627888 -101155584 - AluSq SINE Alu -15 298 1 501 211 0 9 chr11 47628289 47628403 -101155069 + MIR SINE MIR 20 132 -130 333 290 193 0 chr11 47629423 47629599 -101153873 + MIR SINE MIR 49 258 -4 219 192 115 39 chr11 47629695 47629773 -101153699 + MIR SINE MIR 33 116 -92 232 242 0 48 chr11 47630593 47630655 -101152817 - MIR3 SINE MIR -39 169 111 498 75 0 0 chr11 47630777 47630844 -101152628 + (TCCA)n Simple_repeat Simple_repeat 3 69 0 261 260 0 26 chr11 47631113 47631190 -101152282 - L2 LINE L2 -323 2990 2916 282 284 0 49 chr11 47631684 47631765 -101151707 - L2 LINE L2 -2 3311 3235 305 224 26 0 chr11 47632170 47632246 -101151226 + MIR3 SINE MIR 82 159 -49 406 320 36 26 chr11 47632248 47632442 -101151030 + MER117 DNA MER1_type 2 197 0 281 271 146 0 chr11 47633306 47633402 -101150070 + MIR SINE MIR 47 156 -106 296 144 67 89 chr11 47633723 47633813 -101149659 - MLT1H LTR MaLR -367 182 95 203 222 111 0 chr11 47633929 47633992 -101149480 - MIR3 SINE MIR -53 155 86 219 325 61 55 chr11 47633997 47634160 -101149312 - MIR SINE MIR -41 221 58 346 320 176 0 chr11 47634941 47635094 -101148378 + MIR3 SINE MIR 20 199 -9 183 205 0 0 chr11 47635826 47635865 -101147607 + T-rich Low_complexity Low_complexity 1 39 0 376 272 162 7 chr11 47636625 47636761 -101146711 + MIR SINE MIR 36 192 -70 2098 175 43 22 chr11 47636761 47637178 -101146294 + MSTB LTR MaLR 1 426 0 324 262 16 63 chr11 47637291 47637417 -101146055 - MIR3 SINE MIR -6 202 83 330 253 66 0 chr11 47637700 47637791 -101145681 + MIR SINE MIR 68 164 -98 302 313 71 9 chr11 47638060 47638271 -101145201 - L2 LINE L2 -1403 1911 1688 643 224 196 40 chr11 47638411 47638737 -101144735 - MLT1J1 LTR MaLR -7 439 63 211 227 0 0 chr11 47639046 47639090 -101144382 + MIR SINE MIR 76 119 -143 2643 184 36 51 chr11 47639226 47639868 -101143604 - LTR27 LTR ERV1 -2 634 3 448 288 112 9 chr11 47641363 47641578 -101141894 - MIR SINE MIR -8 254 18 2433 86 0 10 chr11 47642259 47642563 -101140909 + AluSp SINE Alu 1 301 -12 654 217 212 5 chr11 47642654 47642838 -101140634 - MIR SINE MIR -24 238 17 625 261 150 75 chr11 47644691 47645141 -101138331 + L2 LINE L2 2201 2616 -697 4186 184 40 6 chr11 47645141 47646013 -101137459 - L1MC2 LINE L1 -9 6335 5434 625 261 150 75 chr11 47646013 47646583 -101136889 + L2 LINE L2 2616 3313 0 296 305 153 8 chr11 47646621 47646752 -101136720 - MIR SINE MIR -10 252 103 436 246 141 78 chr11 47646827 47647083 -101136389 - Charlie8 DNA MER1_type -2093 324 53 1197 148 0 0 chr11 47647085 47647261 -101136211 + AluSg/x SINE Alu 137 312 0 808 268 154 14 chr11 47647752 47648167 -101135305 - L2 LINE L2 0 3313 2841 234 279 137 29 chr11 47649024 47649228 -101134244 + L2 LINE L2 2865 3090 -182 524 256 43 18 chr11 47649290 47649454 -101134018 + MIR SINE MIR 21 188 -74 216 111 0 0 chr11 47649557 47649593 -101133879 + L2 LINE L2 3028 3063 -209 445 275 138 6 chr11 47650733 47650900 -101132572 + MIR SINE MIR 16 204 -58 377 287 123 41 chr11 47650905 47651173 -101132299 - LTR16A1 LTR ERVL -8 449 160 14666 120 38 3 chr11 47651786 47654121 -101129351 + Tigger1 DNA MER2_type 1 2418 0 1733 196 64 62 chr11 47654163 47654242 -101129230 + MLT1D LTR MaLR 12 89 -416 2618 87 14 0 chr11 47654242 47654599 -101128873 - THE1B LTR MaLR -2 362 1 1733 196 64 62 chr11 47654599 47655005 -101128467 + MLT1D LTR MaLR 89 498 -7 1372 186 75 7 chr11 47655017 47655296 -101128176 + MLT2C1 LTR ERVL 1 298 -99 417 253 49 49 chr11 47656545 47656707 -101126765 - MIR SINE MIR -70 192 31 183 265 41 0 chr11 47656980 47657029 -101126443 + MIR SINE MIR 81 131 -77 639 291 112 40 chr11 47657207 47657353 -101126119 - L2 LINE L2 -13 3300 3166 2087 123 10 3 chr11 47657353 47657645 -101125827 + AluSq SINE Alu 1 294 -19 639 291 112 40 chr11 47657645 47658056 -101125416 - L2 LINE L2 -147 3166 2696 386 354 25 0 chr11 47658072 47658230 -101125242 - MIR3 SINE MIR -11 197 36 191 290 48 0 chr11 47658800 47658862 -101124610 - MIR3 SINE MIR -7 201 137 2804 223 51 59 chr11 47658869 47659271 -101124201 - L1ME3 LINE L1 -7 6155 5751 8639 44 2 3 chr11 47659271 47660343 -101123129 - MER11C LTR ERVK 0 1071 1 2804 223 51 59 chr11 47660343 47660924 -101122548 - L1ME3 LINE L1 -411 5751 5179 530 205 31 15 chr11 47661386 47661533 -101121939 + MIR SINE MIR 105 253 -9 217 281 112 11 chr11 47661543 47661632 -101121840 - L2 LINE L2 -36 3277 3180 458 302 13 13 chr11 47661659 47661808 -101121664 - L2 LINE L2 -204 3068 2920 195 254 18 0 chr11 47662090 47662145 -101121327 + MIR SINE MIR 101 156 -106 725 257 27 27 chr11 47662177 47662399 -101121073 - MIR SINE MIR -26 236 15 327 121 0 0 chr11 47662706 47662764 -101120708 + (TG)n Simple_repeat Simple_repeat 1 58 0 252 350 0 10 chr11 47663008 47663105 -101120367 - MIR SINE MIR -2 260 165 283 308 14 20 chr11 47663233 47663377 -101120095 - L2 LINE L2 -211 3061 2919 268 343 9 9 chr11 47663377 47663485 -101119987 + MIR SINE MIR 3 110 -152 1355 161 67 21 chr11 47663485 47663496 -101119976 - L1MB5 LINE L1 -289 5885 5876 347 125 0 0 chr11 47663496 47663552 -101119920 - L1MB5 LINE L1 -6 6168 6113 1355 161 67 21 chr11 47663552 47663825 -101119647 - L1MB5 LINE L1 -298 5876 5588 207 304 35 35 chr11 47663840 47663955 -101119517 + MIR SINE MIR 122 236 -26 2019 156 0 10 chr11 47663956 47664263 -101119209 - AluSx SINE Alu -8 304 1 389 245 78 29 chr11 47665045 47665244 -101118228 + MIR SINE MIR 28 243 -19 923 246 93 53 chr11 47665394 47665825 -101117647 - LTR16A1 LTR ERVL 0 457 10 391 318 148 11 chr11 47666688 47666877 -101116595 - MIR SINE MIR 0 262 48 295 309 14 36 chr11 47667081 47667220 -101116252 - MIR3 SINE MIR -69 139 4 258 308 31 0 chr11 47668133 47668198 -101115274 + L2 LINE L2 3247 3313 0 646 232 19 0 chr11 47668446 47668601 -101114871 - MIR SINE MIR -86 176 19 223 309 106 52 chr11 47669248 47669597 -101113875 - L2 LINE L2 -556 2758 2391 * 665 263 82 17 chr11 47669585 47669817 -101113655 - MIR SINE MIR 0 262 16 424 329 38 13 chr11 47670852 47671010 -101112462 + MIR3 SINE MIR 41 202 -6 559 250 58 17 chr11 47671596 47671768 -101111704 - MIR SINE MIR -44 218 40 2246 119 0 10 chr11 47672007 47672318 -101111154 - AluSc SINE Alu -1 308 1 180 333 0 0 chr11 47672791 47672842 -101110630 + L2 LINE L2 3263 3313 0 200 189 0 0 chr11 47672959 47672996 -101110476 + CT-rich Low_complexity Low_complexity 3 39 0 228 65 0 0 chr11 47673228 47673259 -101110213 - MIR SINE MIR -66 142 112 213 291 36 45 chr11 47673450 47673560 -101109912 - MIR SINE MIR -83 125 17 386 283 192 6 chr11 47674102 47674279 -101109193 + MIR SINE MIR 2 211 -51 381 224 52 69 chr11 47674524 47674698 -101108774 - MIR3 SINE MIR 0 208 38 558 305 55 25 chr11 47675470 47675706 -101107766 - MIR SINE MIR -10 252 10 567 218 0 16 chr11 47675904 47676028 -101107444 + MIR3 SINE MIR 37 158 -50 994 316 19 0 chr11 47677186 47677499 -101105973 - MLT1K LTR MaLR -115 473 155 221 233 23 30 chr11 47677528 47677661 -101105811 + (TGG)n Simple_repeat Simple_repeat 1 132 0 378 0 0 0 chr11 47677932 47677974 -101105498 + (CA)n Simple_repeat Simple_repeat 1 42 0 430 245 28 0 chr11 47678667 47678773 -101104699 - L2 LINE L2 0 3313 3205 284 284 34 68 chr11 47679893 47680041 -101103431 + MIR SINE MIR 117 259 -3 2444 96 0 0 chr11 47680145 47680446 -101103026 + AluSg SINE Alu 1 301 -9 315 304 27 0 chr11 47680528 47680640 -101102832 - L2 LINE L2 0 3272 3158 427 295 58 23 chr11 47681375 47681548 -101101924 + MIR SINE MIR 80 258 -4 944 160 27 21 chr11 47683229 47683416 -101100056 + MER5A DNA MER1_type 2 189 0 2389 105 0 0 chr11 47683528 47683832 -101099640 - AluSx SINE Alu -8 304 1 227 292 184 16 chr11 47683854 47684092 -101099380 - L2 LINE L2 -266 3006 2725 368 252 136 0 chr11 47685328 47685431 -101098041 - L3 LINE CR1 -89 1488 1372 358 305 64 0 chr11 47685447 47685588 -101097884 + MIR SINE MIR 47 196 -66 1144 218 18 7 chr11 47686206 47686481 -101096991 - L1MB8 LINE L1 0 6178 5901 263 308 48 62 chr11 47686565 47686711 -101096761 - L3 LINE CR1 -15 1562 1419 326 277 96 0 chr11 47686798 47686892 -101096580 - MIR SINE MIR -64 144 42 197 333 0 36 chr11 47686975 47687059 -101096413 - L3 LINE CR1 -200 1377 1297 326 293 30 0 chr11 47687104 47687203 -101096269 - L2 LINE L2 -214 3058 2957 1493 158 115 16 chr11 47687295 47687617 -101095855 - MLT1A1 LTR MaLR -11 354 1 422 270 0 26 chr11 47687626 47687741 -101095731 - L3 LINE CR1 -78 1499 1388 2208 100 0 23 chr11 47688053 47688363 -101095109 - AluSx SINE Alu -9 303 1 612 196 71 42 chr11 47688366 47688534 -101094938 - MLT1B LTR MaLR -217 173 1 441 293 0 0 chr11 47688535 47688641 -101094831 + MIR SINE MIR 155 260 -2 832 223 43 0 chr11 47688736 47688920 -101094552 - MIR SINE MIR 0 262 71 266 317 0 39 chr11 47689102 47689206 -101094266 - L2 LINE L2 -172 3100 3001 351 294 49 0 chr11 47690223 47690333 -101093139 + MIR3 SINE MIR 46 158 -50 449 249 16 3 chr11 47690561 47690688 -101092784 - MIR SINE MIR -63 145 66 203 313 111 10 chr11 47691698 47691797 -101091675 - MIR SINE MIR -17 245 137 * 504 278 65 28 chr11 47691790 47692006 -101091466 + MIR SINE MIR 39 262 0 292 313 30 38 chr11 47691982 47692113 -101091359 - MIR SINE MIR -90 172 43 * 281 288 36 39 chr11 47692461 47692598 -101090874 + MIR3 SINE MIR 23 154 -54 420 331 13 0 chr11 47692600 47692751 -101090721 - L2 LINE L2 -188 3084 2932 329 272 65 22 chr11 47692803 47692895 -101090577 - L1ME4a LINE L1 -2 6119 6024 180 77 0 0 chr11 47694122 47694148 -101089324 + (CA)n Simple_repeat Simple_repeat 1 26 0 279 284 12 0 chr11 47695031 47695112 -101088360 + MIR SINE MIR 82 163 -99 899 224 35 0 chr11 47695112 47695282 -101088190 + MER45A DNA AcHobo 1 176 -2 258 105 0 0 chr11 47695374 47695412 -101088060 + (TCCC)n Simple_repeat Simple_repeat 3 40 0 856 262 158 17 chr11 47695412 47695857 -101087615 - L2 LINE L2 -5 3308 2784 415 335 116 0 chr11 47696497 47696661 -101086811 + MIR SINE MIR 69 251 -11 292 194 15 30 chr11 47696869 47696936 -101086536 + MIR3 SINE MIR 133 198 -10 794 220 35 0 chr11 47697159 47697332 -101086140 + MIR SINE MIR 13 191 -71 195 320 107 0 chr11 47697650 47697725 -101085747 + MIR SINE MIR 112 194 -68 259 326 42 0 chr11 47698228 47698323 -101085149 - MIR SINE MIR -81 127 29 477 0 0 0 chr11 47698721 47698774 -101084698 + (CA)n Simple_repeat Simple_repeat 2 54 0 194 263 53 42 chr11 47698892 47698987 -101084485 - MIR SINE MIR -83 125 30 252 141 241 11 chr11 47699660 47699748 -101083724 - MIR SINE MIR -84 124 4 404 290 9 9 chr11 47699764 47699871 -101083601 - MIR SINE MIR -86 122 16 981 218 71 0 chr11 47699929 47700154 -101083318 + MIR SINE MIR 22 262 0 495 291 89 0 chr11 47700834 47700992 -101082480 - MIR SINE MIR -70 192 21 763 272 32 9 chr11 47701087 47701304 -101082168 + MER58A DNA MER1_type 1 222 -2 289 274 17 68 chr11 47701362 47701479 -101081993 - MIR SINE MIR -48 214 104 245 371 88 26 chr11 47702561 47702755 -101080717 + MIR SINE MIR 57 262 0 232 319 215 21 chr11 47702769 47702960 -101080512 + L3b LINE CR1 1351 1578 -5 761 308 29 17 chr11 47703287 47703527 -101079945 + MIR SINE MIR 16 258 -4 575 282 41 36 chr11 47703539 47703734 -101079738 + MIR SINE MIR 61 256 -6 295 319 162 22 chr11 47704361 47704546 -101078926 + MIR SINE MIR 28 238 -24 240 273 122 72 chr11 47704778 47704917 -101078555 + MIR3 SINE MIR 39 184 -24 1763 135 159 12 chr11 47704997 47705324 -101078148 + THE1C LTR MaLR 1 375 0 330 362 26 7 chr11 47705923 47706075 -101077397 + MER5A DNA MER1_type 7 161 -28 788 255 60 34 chr11 47706367 47706591 -101076881 + Charlie4a DNA MER1_type 3 241 -1720 2339 53 0 62 chr11 47706591 47706914 -101076558 + AluY SINE Alu 1 303 -8 788 255 60 34 chr11 47706914 47707042 -101076430 + Charlie4a DNA MER1_type 241 364 -144 1033 178 6 0 chr11 47707045 47707214 -101076258 + AluJo SINE Alu 7 176 -136 931 123 123 13 chr11 47707462 47707689 -101075783 + L1MA8 LINE L1 6019 6270 -21 2135 129 0 0 chr11 47707775 47708070 -101075402 + AluSx SINE Alu 1 295 -17 345 328 22 9 chr11 47708121 47708350 -101075122 - L1ME4a LINE L1 -295 5826 5595 537 238 6 61 chr11 47708427 47708591 -101074881 - L1MB8 LINE L1 -123 6055 5901 833 187 0 41 chr11 47708703 47708874 -101074598 + FRAM SINE Alu 1 156 -20 398 137 253 0 chr11 47708876 47708971 -101074501 + Charlie4a DNA MER1_type 358 476 -32 351 281 166 6 chr11 47710437 47710605 -101072867 + MIR SINE MIR 21 212 -50 428 207 146 37 chr11 47710658 47710822 -101072650 + MIR3 SINE MIR 17 198 -10 504 302 63 34 chr11 47711282 47711523 -101071949 + MIR SINE MIR 13 253 -9 271 302 61 24 chr11 47711818 47711964 -101071508 - MIR3 SINE MIR -27 181 63 266 306 41 0 chr11 47712346 47712444 -101071028 + MIR3 SINE MIR 82 183 -25 640 301 55 25 chr11 47712590 47712826 -101070646 + MIR SINE MIR 18 260 -2 187 309 18 0 chr11 47713741 47713796 -101069676 + L2 LINE L2 3255 3310 -3 182 219 16 78 chr11 47713895 47713959 -101069513 + MIR SINE MIR 153 212 -50 563 256 17 56 chr11 47713971 47714151 -101069321 + MIR SINE MIR 30 202 -60 231 36 0 0 chr11 47714477 47714505 -101068967 + (CCA)n Simple_repeat Simple_repeat 3 30 0 255 273 0 0 chr11 47714543 47714598 -101068874 + L2 LINE L2 3215 3269 -3 200 208 19 19 chr11 47714598 47714651 -101068821 + (TGGG)n Simple_repeat Simple_repeat 1 53 0 533 253 29 41 chr11 47715730 47715900 -101067572 - L2 LINE L2 0 3313 3146 372 265 0 43 chr11 47715922 47716039 -101067433 + MIR3 SINE MIR 49 160 -48 2315 167 48 12 chr11 47716178 47716591 -101066881 - MSTC LTR MaLR 0 428 1 491 344 33 26 chr11 47717315 47717544 -101065928 - MIR SINE MIR -28 234 6 746 281 88 17 chr11 47718079 47718317 -101065155 + MIR SINE MIR 8 262 0 385 270 175 10 chr11 47718315 47718376 -101065096 - MIR SINE MIR -15 247 197 * 2358 83 3 3 chr11 47718376 47718689 -101064783 - AluSq SINE Alu 0 313 1 385 270 175 10 chr11 47718689 47718827 -101064645 - MIR SINE MIR -65 197 15 506 255 58 27 chr11 47719236 47719424 -101064048 - MIR3 SINE MIR -11 197 4 662 240 56 21 chr11 47719449 47719682 -101063790 + MIR SINE MIR 21 261 -1 540 234 8 23 chr11 47719930 47720058 -101063414 - MIR SINE MIR -122 140 15 199 269 77 39 chr11 47720522 47720600 -101062872 + MIR SINE MIR 4 84 -178 444 261 6 97 chr11 47720855 47721031 -101062441 - L2 LINE L2 -187 3085 2926 912 209 82 0 chr11 47721490 47721696 -101061776 + MIR SINE MIR 37 259 -3 184 376 73 30 chr11 47721788 47721953 -101061519 + MIR3 SINE MIR 20 191 -17 207 0 0 0 chr11 47722306 47722329 -101061143 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 454 285 40 13 chr11 47722561 47722712 -101060760 + MIR SINE MIR 68 222 -40 340 154 9 0 chr11 47722745 47722823 -101060649 - L1MA7 LINE L1 0 6312 6226 21 0 0 0 chr11 47722828 47722849 -101060623 + AT_rich Low_complexity Low_complexity 1 21 0 335 273 53 67 chr11 47723082 47723232 -101060240 + MIR SINE MIR 51 198 -64 225 244 0 0 chr11 47723347 47723392 -101060080 + L2 LINE L2 3223 3267 -5 198 156 0 0 chr11 47723666 47723698 -101059774 + MIR SINE MIR 112 143 -65 845 302 22 4 chr11 47723740 47723972 -101059500 - MIR SINE MIR -16 246 11 335 269 119 13 chr11 47724605 47724788 -101058684 + MIR SINE MIR 31 246 -16 204 270 0 0 chr11 47725115 47725178 -101058294 + CT-rich Low_complexity Low_complexity 2 64 0 211 343 50 20 chr11 47725252 47725351 -101058121 + MIR SINE MIR 45 146 -62 2283 87 3 0 chr11 47725466 47725764 -101057708 + AluSq SINE Alu 1 299 -14 1993 121 7 4 chr11 47726144 47726544 -101056928 + AluJb SINE Alu 1 401 0 343 300 93 14 chr11 47726569 47726709 -101056763 - MIR SINE MIR -48 214 64 481 239 138 6 chr11 47726957 47727116 -101056356 + MIR3 SINE MIR 17 197 -11 391 292 35 35 chr11 47727722 47727866 -101055606 - MIR3 SINE MIR -19 189 46 252 388 78 0 chr11 47728388 47728517 -101054955 - L2 LINE L2 -2 3270 3132 297 276 11 60 chr11 47729646 47729730 -101053742 + CT-rich Low_complexity Low_complexity 1 88 -88 1836 153 4 0 chr11 47729730 47730011 -101053461 - AluJb SINE Alu -19 293 12 297 276 11 60 chr11 47730011 47730111 -101053361 + CT-rich Low_complexity Low_complexity 88 176 0 228 293 27 13 chr11 47730157 47730232 -101053240 - MIR SINE MIR -111 97 22 437 296 33 10 chr11 47730310 47730622 -101052850 + (TG)n Simple_repeat Simple_repeat 1 319 0 30 27 0 0 chr11 47731206 47731243 -101052229 + AT_rich Low_complexity Low_complexity 1 37 0 444 250 11 0 chr11 47731846 47731938 -101051534 + L2 LINE L2 3160 3252 -20 791 259 20 32 chr11 47731971 47732218 -101051254 + MIR SINE MIR 7 250 -12 473 322 82 29 chr11 47732302 47732547 -101050925 + MIR SINE MIR 2 259 -3 208 333 14 0 chr11 47733463 47733535 -101049937 + MIR SINE MIR 79 151 -111 206 308 98 50 chr11 47734224 47734406 -101049066 - MIR SINE MIR -50 212 17 355 306 63 36 chr11 47734855 47735077 -101048395 - L2 LINE L2 -178 3094 2867 215 267 48 67 chr11 47735367 47735472 -101048000 + MER91B DNA MER1_type 1 103 -87 520 252 20 0 chr11 47737066 47737213 -101046259 - MER117 DNA MER1_type -47 150 1 421 263 30 30 chr11 47737289 47737422 -101046050 - MIR SINE MIR -96 166 34 400 302 95 50 chr11 47738468 47738710 -101044762 - L2 LINE L2 -51 3262 3010 213 220 85 0 chr11 47738988 47739047 -101044425 + MIR SINE MIR 70 133 -75 812 276 189 5 chr11 47739049 47739466 -101044006 + MLT1J LTR MaLR 3 496 -15 2019 130 3 7 chr11 47739812 47740112 -101043360 - AluSx SINE Alu -13 299 1 281 327 230 17 chr11 47740270 47740521 -101042951 - L2 LINE L2 -663 2651 2455 2271 103 0 0 chr11 47740521 47740822 -101042650 + AluSx SINE Alu 1 301 -11 281 327 230 17 chr11 47740822 47740931 -101042541 - L2 LINE L2 -859 2455 2214 308 325 114 0 chr11 47741276 47741442 -101042030 + MIR SINE MIR 8 192 -70 288 0 0 0 chr11 47741792 47741824 -101041648 + (TG)n Simple_repeat Simple_repeat 1 32 0 858 262 26 9 chr11 47741922 47742155 -101041317 - MIR SINE MIR 0 262 26 1272 33 0 0 chr11 47742444 47742595 -101040877 + L1PA5 LINE L1 6001 6151 -3 180 0 0 0 chr11 47742711 47742731 -101040741 + (GCCTG)n Simple_repeat Simple_repeat 5 24 0 298 337 52 35 chr11 47742868 47743040 -101040432 + MER5A DNA MER1_type 8 182 -7 265 203 0 31 chr11 47743639 47743703 -101039769 + (TCTCTG)n Simple_repeat Simple_repeat 2 63 0 302 247 0 0 chr11 47744017 47744090 -101039382 - Charlie8 DNA MER1_type -2254 163 91 215 271 0 0 chr11 47744692 47744740 -101038732 + C-rich Low_complexity Low_complexity 3 50 0 206 232 36 0 chr11 47745303 47745359 -101038113 - L2 LINE L2 0 3272 3215 188 182 0 0 chr11 47745504 47745537 -101037935 + MIR SINE MIR 112 144 -118 328 290 20 10 chr11 47746072 47746172 -101037300 + MIR SINE MIR 13 113 -149 2328 77 0 7 chr11 47746197 47746495 -101036977 + AluSc SINE Alu 1 296 -13 224 228 70 26 chr11 47746528 47746619 -101036853 - MIR SINE MIR -83 125 29 209 306 99 9 chr11 47747486 47747597 -101035875 - MIR3 SINE MIR -87 121 1 628 297 156 34 chr11 47747861 47748245 -101035227 - L3 LINE CR1 -15 1562 1132 357 219 73 15 chr11 47748325 47748462 -101035010 + MER117 DNA MER1_type 7 151 -46 185 0 0 39 chr11 47749012 47749038 -101034434 + (CAAAAA)n Simple_repeat Simple_repeat 6 30 0 296 138 15 0 chr11 47751994 47752059 -101031413 + (TG)n Simple_repeat Simple_repeat 2 67 0 239 329 57 0 chr11 47753596 47753666 -101029806 + MIR3 SINE MIR 82 155 -53 186 274 98 20 chr11 47754174 47754276 -101029196 + L2 LINE L2 3137 3246 -26 603 246 105 48 chr11 47755536 47755764 -101027708 + MIR SINE MIR 19 259 -3 216 274 104 57 chr11 47756806 47756912 -101026560 - L2 LINE L2 -26 3287 3177 194 361 69 0 chr11 47756961 47757033 -101026439 - MIR SINE MIR -67 195 119 2298 259 42 6 chr11 47757972 47758636 -101024836 - L1ME1 LINE L1 -22 6144 5457 244 231 220 0 chr11 47758694 47758785 -101024687 + MIR SINE MIR 61 171 -91 331 344 38 13 chr11 47758942 47759099 -101024373 + MIR SINE MIR 63 223 -39 736 307 28 20 chr11 47759121 47759372 -101024100 + MIR SINE MIR 9 261 -1 282 111 16 32 chr11 47759643 47759706 -101023766 + (CA)n Simple_repeat Simple_repeat 2 63 0 567 89 76 0 chr11 47759717 47759874 -101023598 + (CA)n Simple_repeat Simple_repeat 1 169 0 517 85 57 34 chr11 47759905 47760081 -101023391 + (CA)n Simple_repeat Simple_repeat 1 180 0 721 76 58 6 chr11 47760096 47760267 -101023205 + (CA)n Simple_repeat Simple_repeat 1 180 0 605 330 13 22 chr11 47760793 47761017 -101022455 + MIR SINE MIR 9 230 -32 229 234 149 43 chr11 47762081 47762175 -101021297 + L2 LINE L2 3210 3313 0 521 290 85 15 chr11 47762421 47762621 -101020851 + MIR SINE MIR 47 260 -2 477 261 85 8 chr11 47763090 47763220 -101020252 - MIR SINE MIR -78 184 45 276 333 72 28 chr11 47763767 47763946 -101019526 + MIR SINE MIR 8 197 -58 274 279 221 19 chr11 47764460 47764614 -101018858 + MIR3 SINE MIR 2 186 -22 210 191 0 0 chr11 47765241 47765288 -101018184 + GA-rich Low_complexity Low_complexity 3 49 0 743 291 75 12 chr11 47765458 47765699 -101017773 + MIR SINE MIR 7 262 0 311 298 43 21 chr11 47765932 47766073 -101017399 + MIR3 SINE MIR 5 148 -60 829 249 146 53 chr11 47766081 47766498 -101016974 + L2 LINE L2 2851 3306 -7 22 89 0 0 chr11 47767413 47767458 -101016014 + GC_rich Low_complexity Low_complexity 1 45 0 501 58 0 0 chr11 47768542 47768611 -101014861 + (CAGGG)n Simple_repeat Simple_repeat 3 71 0 454 262 40 16 chr11 47769090 47769216 -101014256 - MIR SINE MIR -1 261 133 458 273 0 0 chr11 47769867 47769966 -101013506 + MIR SINE MIR 12 110 -152 212 205 0 0 chr11 47770131 47770170 -101013302 + MIR SINE MIR 213 251 -11 463 340 75 26 chr11 47770552 47770817 -101012655 + L3 LINE CR1 1300 1577 0 380 267 28 83 chr11 47770922 47771102 -101012370 - L2 LINE L2 -38 3234 3065 2339 57 0 0 chr11 47771177 47771490 -101011982 - AluY SINE Alu 0 313 1 270 290 68 80 chr11 47771553 47771715 -101011757 + MIR SINE MIR 103 262 0 187 282 42 14 chr11 47771788 47771859 -101011613 + MIR SINE MIR 144 216 -46 192 125 0 0 chr11 47771937 47771969 -101011503 + (TGGGGG)n Simple_repeat Simple_repeat 2 33 0 693 241 81 30 chr11 47772406 47772642 -101010830 + MIR SINE MIR 14 261 -1 542 315 70 19 chr11 47773287 47773500 -101009972 + MIR SINE MIR 33 256 -6 243 304 88 10 chr11 47774088 47774190 -101009282 + MIR SINE MIR 109 218 -44 408 311 23 23 chr11 47774546 47774678 -101008794 - MIR SINE MIR -34 228 97 240 250 17 0 chr11 47774758 47774818 -101008654 - MER5A DNA MER1_type -43 146 86 242 328 125 8 chr11 47774860 47774988 -101008484 + MER5A DNA MER1_type 41 183 -6 646 307 68 11 chr11 47775007 47775271 -101008201 - L2 LINE L2 -84 3229 2951 195 97 32 81 chr11 47775605 47775667 -101007805 + (CA)n Simple_repeat Simple_repeat 1 59 0 2060 118 0 40 chr11 47775696 47776017 -101007455 + AluSx SINE Alu 4 311 -1 651 296 83 26 chr11 47776021 47776251 -101007221 + MIR SINE MIR 19 261 -1 293 316 158 26 chr11 47776204 47776356 -101007116 - MIR SINE MIR 0 262 91 * 329 349 9 0 chr11 47777055 47777161 -101006311 + MIR SINE MIR 50 156 -106 296 344 65 39 chr11 47777496 47778092 -101005380 + L1M4 LINE L1 4177 4788 -1358 422 307 132 11 chr11 47778205 47778394 -101005078 + MIR SINE MIR 51 262 0 321 337 37 58 chr11 47779601 47779844 -101003628 + L2 LINE L2 2357 2594 -720 543 230 14 40 chr11 47779956 47780104 -101003368 - L1PB4 LINE L1 -2 6164 6021 302 293 116 14 chr11 47780208 47780404 -101003068 - MIR SINE MIR 0 262 44 2255 108 0 0 chr11 47780664 47780970 -101002502 + AluSg SINE Alu 1 306 -4 773 177 108 0 chr11 47781064 47781250 -101002222 + L1MD3 LINE L1 7788 7993 -2 388 291 20 46 chr11 47781289 47781440 -101002032 + MER117 DNA MER1_type 3 149 -48 318 254 262 16 chr11 47781594 47781720 -101001752 + L1ME3 LINE L1 5907 6063 -99 882 271 14 14 chr11 47781954 47782175 -101001297 + MIR SINE MIR 42 262 0 304 169 72 12 chr11 47782771 47782854 -101000618 + MLT1J1 LTR MaLR 359 446 0 216 300 8 92 chr11 47783076 47783196 -101000276 - MIR3 SINE MIR -84 124 15 1761 155 47 14 chr11 47783785 47784082 -100999390 - AluJo SINE Alu -5 307 1 866 124 56 19 chr11 47784457 47784618 -100998854 + THE1C LTR MaLR 1 167 -208 217 354 24 0 chr11 47784618 47784700 -100998772 - MIR3 SINE MIR -42 166 83 552 174 0 0 chr11 47784746 47784867 -100998605 + (TCCA)n Simple_repeat Simple_repeat 1 121 0 427 315 144 23 chr11 47785508 47785591 -100997881 + L2 LINE L2 2972 3044 -269 2001 130 30 76 chr11 47785591 47785984 -100997488 + THE1C LTR MaLR 1 375 0 427 315 144 23 chr11 47785984 47786205 -100997267 + L2 LINE L2 3044 3313 0 351 279 165 14 chr11 47786434 47786588 -100996884 + MIR SINE MIR 13 176 -78 189 268 18 36 chr11 47786607 47786663 -100996809 - L2 LINE L2 -47 3225 3171 360 236 278 0 chr11 47786677 47786821 -100996651 + MIR SINE MIR 79 262 0 226 181 14 14 chr11 47786950 47786983 -100996489 + (TA)n Simple_repeat Simple_repeat 1 33 -39 2164 105 3 3 chr11 47786983 47787279 -100996193 + AluSq SINE Alu 1 296 -17 226 181 14 14 chr11 47787279 47787317 -100996155 + (TA)n Simple_repeat Simple_repeat 32 72 0 1805 211 23 41 chr11 47787338 47787825 -100995647 - L1ME2 LINE L1 -100 6064 5587 1493 262 70 19 chr11 47787825 47788150 -100995322 - L1MEc LINE L1 -3366 3278 2971 1824 130 48 7 chr11 47788150 47788443 -100995029 - AluSx SINE Alu -7 305 1 1493 262 70 19 chr11 47788443 47789016 -100994456 - L1MEc LINE L1 -3673 2971 2369 460 157 0 0 chr11 47789021 47789091 -100994381 + AluSq SINE Alu 129 198 -115 2455 234 33 6 chr11 47789191 47789822 -100993650 - L1MB7 LINE L1 -9 6175 5528 714 290 82 30 chr11 47789823 47790006 -100993466 - L1MEc LINE L1 -4535 2290 2118 1841 157 0 14 chr11 47790006 47790458 -100993014 - AluSx SINE Alu 0 448 1 714 290 82 30 chr11 47790458 47790735 -100992737 - L1MEc LINE L1 -4707 2118 1805 345 217 174 26 chr11 47790739 47790969 -100992503 - L1MEc LINE L1 -4990 1552 1289 817 233 79 0 chr11 47791620 47791835 -100991637 - MIR SINE MIR -3 259 28 465 210 65 58 chr11 47792039 47792177 -100991295 + MER5A DNA MER1_type 51 189 0 303 308 9 9 chr11 47793625 47793732 -100989740 + MIR SINE MIR 61 167 -95 630 294 14 47 chr11 47793737 47793951 -100989521 - MIR SINE MIR -5 257 51 212 204 0 0 chr11 47794644 47794688 -100988784 - MER91 DNA MER1_type -93 47 4 181 325 0 0 chr11 47794848 47794888 -100988584 - L2 LINE L2 -107 3165 3126 2259 116 7 0 chr11 47795050 47795351 -100988121 + AluSx SINE Alu 1 303 -9 337 224 82 0 chr11 47795522 47795607 -100987865 + L2 LINE L2 3150 3241 -31 189 0 0 0 chr11 47796019 47796040 -100987432 + (A)n Simple_repeat Simple_repeat 1 21 0 201 214 0 0 chr11 47796210 47796250 -100987222 + MIR SINE MIR 116 154 -108 628 230 16 64 chr11 47796506 47796693 -100986779 - MIR3 SINE MIR -5 203 26 2294 86 0 0 chr11 47796693 47796997 -100986475 - AluSg SINE Alu 0 304 1 309 346 44 39 chr11 47797036 47797218 -100986254 - MIR SINE MIR 0 262 80 354 252 7 96 chr11 47798201 47798336 -100985136 + MER5A DNA MER1_type 44 166 -23 419 293 17 69 chr11 47799045 47799080 -100984392 - MIR3 SINE MIR -29 179 144 2406 102 0 9 chr11 47799080 47799395 -100984077 - AluSx SINE Alu 0 312 1 419 293 17 69 chr11 47799395 47799533 -100983939 - MIR3 SINE MIR -64 144 15 214 293 0 0 chr11 47799542 47799600 -100983872 + CT-rich Low_complexity Low_complexity 1 58 0 669 276 64 56 chr11 47800816 47801193 -100982279 - L2 LINE L2 -1 3312 2933 597 273 139 56 chr11 47801359 47802023 -100981449 + Charlie7 DNA MER1_type 5 723 -1889 640 213 132 23 chr11 47803932 47804106 -100979366 - MIR SINE MIR -1 261 69 313 170 0 0 chr11 47804109 47804162 -100979310 + MIR SINE MIR 195 247 -15 442 267 0 0 chr11 47804180 47804266 -100979206 + AluJ/FLAM SINE Alu 2 87 -225 1914 99 0 16 chr11 47804266 47804350 -100979122 + AluSx SINE Alu 52 136 -176 1897 123 0 86 chr11 47804350 47804674 -100978798 + AluSx SINE Alu 1 296 -16 1914 99 0 16 chr11 47804674 47804842 -100978630 + AluSx SINE Alu 136 300 -12 272 290 50 30 chr11 47805369 47805469 -100978003 - MIR SINE MIR -66 196 95 340 231 289 12 chr11 47805505 47805678 -100977794 - MIR SINE MIR -11 251 31 251 203 13 101 chr11 47805819 47805898 -100977574 + MIR SINE MIR 78 149 -59 241 291 87 31 chr11 47806946 47807073 -100976399 + MIR SINE MIR 111 244 -18 419 302 26 31 chr11 47808201 47808393 -100975079 - LTR16C LTR ERVL -2 489 299 541 232 247 11 chr11 47808737 47808927 -100974545 + MIR SINE MIR 14 248 -14 253 221 15 44 chr11 47808907 47808975 -100974497 - MIR SINE MIR -83 179 114 * 1100 148 0 6 chr11 47810232 47810394 -100973078 - AluSg/x SINE Alu -18 294 134 2381 94 3 0 chr11 47810394 47810701 -100972771 - AluSq SINE Alu -5 308 1 248 219 0 22 chr11 47810805 47810893 -100972579 + MIR SINE MIR 46 132 -76 317 350 45 38 chr11 47811174 47811308 -100972164 - MIR SINE MIR -25 237 100 2217 95 0 38 chr11 47811308 47811623 -100971849 + AluSg SINE Alu 2 304 -6 317 350 45 38 chr11 47811623 47811645 -100971827 - MIR SINE MIR -162 100 80 1160 223 34 4 chr11 47811718 47811951 -100971521 + MIR SINE MIR 2 241 -21 231 36 0 0 chr11 47811959 47811987 -100971485 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 528 276 52 17 chr11 47812000 47812174 -100971298 - MIR SINE MIR -77 185 6 194 278 56 0 chr11 47812517 47812571 -100970901 + MIR SINE MIR 63 119 -143 216 171 0 0 chr11 47813146 47813181 -100970291 + (CA)n Simple_repeat Simple_repeat 1 35 0 309 227 0 0 chr11 47813727 47813868 -100969604 + (TG)n Simple_repeat Simple_repeat 1 141 0 420 222 0 0 chr11 47813934 47814114 -100969358 + (TG)n Simple_repeat Simple_repeat 1 180 0 287 239 80 0 chr11 47814423 47814511 -100968961 + L2 LINE L2 3136 3230 -42 196 328 31 0 chr11 47815614 47815678 -100967794 - MIR SINE MIR -22 240 175 279 208 0 0 chr11 47815800 47815848 -100967624 - MIR SINE MIR -111 151 104 396 269 39 45 chr11 47815861 47816017 -100967455 - MIR SINE MIR -20 242 88 288 267 33 0 chr11 47816478 47816568 -100966904 - LTR16A1 LTR ERVL -16 441 349 190 167 0 0 chr11 47816836 47816866 -100966606 + L2 LINE L2 3223 3252 -20 1636 211 142 22 chr11 47816953 47817404 -100966068 - MLT1D LTR MaLR 0 505 1 717 201 187 23 chr11 47817441 47817655 -100965817 + LTR16A1 LTR ERVL 202 450 -7 538 236 8 24 chr11 47817675 47817802 -100965670 - MIR SINE MIR -62 146 22 279 226 113 9 chr11 47818233 47818348 -100965124 + LTR33 LTR ERVL 33 159 -362 440 238 111 23 chr11 47818372 47818451 -100965021 + LTR33 LTR ERVL 335 406 -115 1806 147 171 51 chr11 47818451 47818556 -100964916 + MLT1D LTR MaLR 1 92 -413 2318 96 0 16 chr11 47818556 47818870 -100964602 + AluSx SINE Alu 1 309 -3 1806 147 171 51 chr11 47818870 47819214 -100964258 + MLT1D LTR MaLR 92 504 -1 440 238 111 23 chr11 47819214 47819306 -100964166 + LTR33 LTR ERVL 406 521 0 372 236 158 16 chr11 47819708 47819835 -100963637 + MIR SINE MIR 118 262 0 530 222 111 107 chr11 47819868 47819991 -100963481 - L2 LINE L2 -46 3267 3146 1701 173 0 11 chr11 47819991 47820262 -100963210 - AluJb SINE Alu -44 268 1 530 222 111 107 chr11 47820262 47820381 -100963091 - L2 LINE L2 -167 3146 3024 186 264 104 19 chr11 47820560 47820666 -100962806 + L2 LINE L2 2908 3022 -250 1468 142 0 0 chr11 47820730 47820935 -100962537 - AluSx SINE Alu -107 205 1 273 79 0 0 chr11 47820964 47821002 -100962470 - MIR SINE MIR -122 140 103 233 224 0 20 chr11 47822001 47822050 -100961422 - L3 LINE CR1 -113 1464 1417 1495 108 9 0 chr11 47822219 47822441 -100961031 - L1MA4A LINE L1 -3 6300 6077 1078 211 37 105 chr11 47822529 47822909 -100960563 - MLT1A1 LTR MaLR -11 354 1 304 253 77 0 chr11 47823026 47823117 -100960355 - MER117 DNA MER1_type -96 101 4 292 279 221 22 chr11 47823980 47824116 -100959356 + L2 LINE L2 3110 3272 0 375 23 0 0 chr11 47824127 47824158 -100959314 + (GGGAA)n Simple_repeat Simple_repeat 1 75 0 375 23 0 0 chr11 47824158 47824202 -100959270 + (GGGAA)n Simple_repeat Simple_repeat 5 48 0 429 214 152 0 chr11 47824337 47824449 -100959023 + MIR SINE MIR 62 190 -72 252 329 26 13 chr11 47825431 47825583 -100957889 - L1MCc LINE L1 -6250 173 20 459 316 37 15 chr11 47825723 47825859 -100957613 - MIR SINE MIR -119 143 5 216 0 0 0 chr11 47826029 47826053 -100957419 + (CA)n Simple_repeat Simple_repeat 2 25 0 189 0 0 0 chr11 47826052 47826073 -100957399 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 646 251 48 29 chr11 47826565 47826772 -100956700 + MIR SINE MIR 52 262 0 485 294 26 13 chr11 47826855 47827008 -100956464 - MER5A DNA MER1_type -32 157 3 7741 27 7 0 chr11 47827309 47828983 -100954489 - L1PA4 LINE L1 -5 6150 4471 348 217 45 136 chr11 47829134 47829221 -100954251 + MER117 DNA MER1_type 10 71 -126 803 197 26 66 chr11 47829221 47829449 -100954023 + MER20 DNA MER1_type 1 219 0 348 217 45 136 chr11 47829449 47829559 -100953913 + MER117 DNA MER1_type 71 189 -8 365 143 14 0 chr11 47829609 47829679 -100953793 - MSTA LTR MaLR 0 426 356 980 62 0 0 chr11 47829679 47829807 -100953665 - L1PA8 LINE L1 -276 5896 5769 35789 89 12 9 chr11 47829822 47835949 -100947523 - L1PA6 LINE L1 -5 6149 11 746 32 0 0 chr11 47835962 47836056 -100947416 - L1P3 LINE L1 -400 5772 5679 2143 53 0 4 chr11 47836056 47836311 -100947161 + L1PA8 LINE L1 5909 6172 0 1080 180 133 1 chr11 47836311 47836599 -100946873 - MSTA LTR MaLR -63 369 18 266 79 0 0 chr11 47836599 47836637 -100946835 + MSTB LTR MaLR 24 61 -365 207 213 43 0 chr11 47836637 47836684 -100946788 + MER5A DNA MER1_type 139 187 -2 2180 257 94 65 chr11 47837406 47838739 -100944733 + HAL1 LINE L1 357 1728 -779 742 263 54 23 chr11 47838787 47839308 -100944164 + HAL1 LINE L1 1866 2501 -6 380 203 302 0 chr11 47839332 47839500 -100943972 + L1MD3 LINE L1 7693 7993 -2 208 248 16 107 chr11 47840099 47840220 -100943252 + MIR SINE MIR 34 143 -119 300 316 10 2 chr11 47840244 47840351 -100943121 - MIR SINE MIR -51 157 51 465 246 62 23 chr11 47840435 47840565 -100942907 - L2 LINE L2 -8 3305 3171 331 300 9 0 chr11 47840963 47841073 -100942399 + MIR3 SINE MIR 46 156 -52 206 323 182 0 chr11 47841136 47841235 -100942237 - L2 LINE L2 0 3313 3197 725 327 60 45 chr11 47841689 47842237 -100941235 + L2 LINE L2 2639 3268 -4 253 281 34 11 chr11 47842390 47842479 -100940993 + MIR SINE MIR 56 146 -62 712 263 138 43 chr11 47842914 47843241 -100940231 + MLT1G1 LTR MaLR 238 595 0 484 283 135 13 chr11 47843305 47843535 -100939937 + MIR SINE MIR 1 258 -4 701 329 53 20 chr11 47843539 47843989 -100939483 - L2 LINE L2 -11 3302 2838 691 255 66 19 chr11 47845392 47845651 -100937821 + L2 LINE L2 2818 3088 -225 578 232 42 24 chr11 47845678 47845846 -100937626 + MER5B DNA MER1_type 1 171 -7 628 250 34 34 chr11 47845918 47846094 -100937378 - MIR SINE MIR -79 183 8 300 210 274 8 chr11 47846111 47846235 -100937237 - MIR SINE MIR -75 187 31 1406 104 26 30 chr11 47846235 47846466 -100937006 + MER30 DNA MER1_type 1 230 0 500 158 12 0 chr11 47846470 47846552 -100936920 + MER30 DNA MER1_type 148 230 0 683 279 97 13 chr11 47846924 47847161 -100936311 - MIR SINE MIR -3 259 3 381 359 25 0 chr11 47848190 47848349 -100935123 + L2 LINE L2 2891 3053 -219 1032 154 0 36 chr11 47848460 47848655 -100934817 + MER5A DNA MER1_type 1 188 -1 357 282 160 21 chr11 47848829 47849017 -100934455 - MIR SINE MIR -28 234 21 490 231 137 34 chr11 47849089 47849323 -100934149 - HAL1 LINE L1 0 2507 2250 379 351 46 7 chr11 47849352 47849503 -100933969 + MER91B DNA MER1_type 33 189 -1 428 244 45 26 chr11 47849518 47849674 -100933798 - HAL1 LINE L1 -311 2196 2038 1342 285 44 37 chr11 47849877 47850333 -100933139 - MLT1J LTR MaLR -52 459 1 267 296 34 119 chr11 47850430 47850782 -100932690 + L2 LINE L2 2877 3198 -74 241 193 0 24 chr11 47851685 47851768 -100931704 + A-rich Low_complexity Low_complexity 4 84 0 819 277 139 36 chr11 47851847 47851938 -100931534 - MLT1J LTR MaLR -25 486 406 1433 182 73 53 chr11 47851938 47852296 -100931176 - MLT1A1 LTR MaLR 0 365 1 819 277 139 36 chr11 47852296 47852644 -100930828 - MLT1J LTR MaLR -105 406 2 715 239 78 53 chr11 47853163 47853406 -100930066 - MIR SINE MIR -12 250 2 284 331 160 11 chr11 47854432 47854613 -100928859 - MIR SINE MIR -5 257 50 1011 217 213 35 chr11 47855552 47856012 -100927460 + MLT1H LTR MaLR 1 542 -7 350 307 144 46 chr11 47857014 47857340 -100926132 + MLT1H1-int LTR MaLR 1013 1370 -1 424 282 81 52 chr11 47857385 47857674 -100925798 + MLT1H1 LTR MaLR 42 497 -118 560 221 111 35 chr11 47857735 47857907 -100925565 + MER5A DNA MER1_type 1 185 -4 278 252 131 0 chr11 47859094 47859201 -100924271 + MIR SINE MIR 86 206 -56 316 299 119 0 chr11 47859347 47859481 -100923991 - MIR SINE MIR -111 151 2 271 249 78 79 chr11 47859935 47860160 -100923312 - MIR SINE MIR -26 236 3 466 340 12 0 chr11 47860861 47861023 -100922449 - MER103 DNA DNA -1 165 2 1504 194 23 72 chr11 47861418 47861809 -100921663 + MLT1A2 LTR MaLR 1 372 -2 471 291 57 0 chr11 47861824 47861982 -100921490 + MIR SINE MIR 25 191 -71 916 290 125 9 chr11 47862428 47863058 -100920414 + L2 LINE L2 2460 3155 -158 887 262 0 5 chr11 47863076 47863278 -100920194 + MER3 DNA MER1_type 6 206 -3 371 248 47 31 chr11 47863294 47863373 -100920099 + L2 LINE L2 3181 3264 -49 2430 97 3 0 chr11 47863373 47863682 -100919790 - AluSx SINE Alu 0 312 3 371 248 47 31 chr11 47863682 47863731 -100919741 + L2 LINE L2 3264 3311 -2 207 247 44 39 chr11 47863744 47863832 -100919640 - MIR SINE MIR -64 144 72 295 273 113 33 chr11 47864439 47864589 -100918883 + MIR SINE MIR 100 261 -1 288 289 162 0 chr11 47864627 47864769 -100918703 - L2 LINE L2 -213 3059 2895 606 98 72 175 chr11 47865061 47865255 -100918217 + MER53 DNA DNA 1 174 -15 2376 95 3 0 chr11 47865430 47865725 -100917747 - AluSp SINE Alu -16 297 2 182 333 0 0 chr11 47865745 47865802 -100917670 + L2 LINE L2 2916 2972 -341 2457 87 7 0 chr11 47865813 47866122 -100917350 - AluY SINE Alu 0 311 1 223 305 24 0 chr11 47866805 47866887 -100916585 + L2 LINE L2 3189 3272 0 1101 303 120 34 chr11 47867659 47868193 -100915279 + MLT1K LTR MaLR 4 583 -5 247 325 155 10 chr11 47868507 47868707 -100914765 - MIR SINE MIR -32 230 2 434 288 53 1 chr11 47868782 47868905 -100914567 + MIR SINE MIR 18 153 -55 2120 153 11 0 chr11 47868905 47869283 -100914189 - L1MB3 LINE L1 -15 6168 5787 434 288 53 1 chr11 47869283 47869301 -100914171 + MIR SINE MIR 153 169 -39 361 172 91 0 chr11 47871488 47871587 -100911885 + MIR SINE MIR 30 137 -125 1205 264 185 50 chr11 47871588 47872487 -100910985 + L2 LINE L2 1529 2305 -1008 2257 75 0 14 chr11 47872487 47872768 -100910704 + AluSg SINE Alu 34 310 0 1205 264 185 50 chr11 47872768 47873373 -100910099 + L2 LINE L2 2305 3263 -50 232 263 111 20 chr11 47873533 47873632 -100909840 - MIR SINE MIR -106 156 49 1922 113 108 101 chr11 47873689 47873756 -100909716 - MSTA LTR MaLR 0 428 363 647 48 0 0 chr11 47873756 47873839 -100909633 + L1PA5 LINE L1 6063 6145 -9 1922 113 108 101 chr11 47873839 47874196 -100909276 - MSTA LTR MaLR -65 363 1 265 190 17 0 chr11 47874464 47874522 -100908950 - MIR SINE MIR -116 146 88 247 318 45 0 chr11 47875005 47875093 -100908379 + MIR SINE MIR 171 262 0 203 281 116 8 chr11 47875327 47875448 -100908024 - L2 LINE L2 -214 3058 2925 1061 171 22 45 chr11 47875728 47875950 -100907522 - MER20 DNA MER1_type -2 217 1 268 336 171 5 chr11 47877298 47877785 -100905687 - L2 LINE L2 -11 3302 2737 293 122 82 0 chr11 47877810 47877859 -100905613 + Alu SINE Alu 2 54 -249 2008 115 18 11 chr11 47877867 47878146 -100905326 + AluSx SINE Alu 26 306 -6 938 139 0 6 chr11 47878155 47878335 -100905137 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 1099 212 13 39 chr11 47878515 47878746 -100904726 - MER82 DNA MER2_type -3 650 426 3618 123 81 8 chr11 47878754 47879018 -100904454 - Tigger3(Golem) DNA MER2_type 0 3029 2786 2304 100 10 0 chr11 47879018 47879327 -100904145 + AluSp SINE Alu 1 312 -1 3618 123 81 8 chr11 47879327 47879713 -100903759 - Tigger3(Golem) DNA MER2_type -243 2786 2331 1775 155 23 4 chr11 47879715 47879979 -100903493 + AluJb SINE Alu 1 269 -43 7765 133 27 12 chr11 47879979 47880583 -100902889 - Tigger3(Golem) DNA MER2_type -1746 1283 690 2455 82 10 0 chr11 47880583 47880888 -100902584 - AluSx SINE Alu -4 308 1 7765 133 27 12 chr11 47880888 47881547 -100901925 - Tigger3(Golem) DNA MER2_type -2339 690 1 2190 169 7 35 chr11 47881547 47881978 -100901494 - MER82 DNA MER2_type -234 419 1 295 304 65 11 chr11 47881978 47882070 -100901402 - L2 LINE L2 -779 2535 2439 278 173 19 0 chr11 47882092 47882144 -100901328 - Zaphod DNA AcHobo 0 4031 3979 * 680 325 72 57 chr11 47882111 47882529 -100900943 - MER115 DNA AcHobo -218 475 52 1290 164 74 7 chr11 47882529 47882828 -100900644 + MER33 DNA MER1_type 1 319 -5 480 177 14 5 chr11 47883126 47883224 -100900248 + MLT1H LTR MaLR 15 157 -392 1412 231 163 42 chr11 47883339 47883793 -100899679 + MLT1H LTR MaLR 41 549 0 1855 239 61 46 chr11 47884553 47885114 -100898358 - MLT1E LTR MaLR -7 586 18 239 263 0 0 chr11 47885426 47885483 -100897989 + MIR SINE MIR 189 245 -17 1478 155 175 7 chr11 47885593 47885890 -100897582 + MER47A DNA MER2_type 20 366 0 528 106 0 0 chr11 47886336 47886421 -100897051 + (TC)n Simple_repeat Simple_repeat 2 86 0 243 0 0 0 chr11 47886421 47886448 -100897024 + (CA)n Simple_repeat Simple_repeat 1 27 0 2307 123 0 0 chr11 47886490 47886798 -100896674 + AluSg SINE Alu 1 308 -2 297 356 92 6 chr11 47887848 47888022 -100895450 - MIR SINE MIR -6 256 68 209 286 0 0 chr11 47888063 47888112 -100895360 - MER91 DNA MER1_type -91 49 1 2132 102 39 0 chr11 47888283 47888568 -100894904 + AluSp SINE Alu 3 298 -15 183 323 16 0 chr11 47888662 47888724 -100894748 + MIR SINE MIR 150 212 -50 321 250 23 87 chr11 47888730 47888863 -100894609 - MIR SINE MIR -65 143 31 195 100 0 0 chr11 47889173 47889203 -100894269 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 718 246 235 6 chr11 47889211 47889677 -100893795 + L2 LINE L2 2741 3312 -1 794 281 16 24 chr11 47889729 47889978 -100893494 + MIR SINE MIR 2 248 -14 250 333 79 96 chr11 47889980 47890210 -100893262 - L2 LINE L2 -54 3218 2995 2005 153 0 0 chr11 47890210 47890567 -100892905 + AluSx SINE Alu 3 359 0 250 333 79 96 chr11 47890567 47890741 -100892731 - L2 LINE L2 -277 2995 2820 225 108 0 0 chr11 47890943 47890980 -100892492 + (GGGA)n Simple_repeat Simple_repeat 4 40 0 290 290 43 21 chr11 47891005 47891098 -100892374 + L2 LINE L2 2997 3091 -181 191 229 42 0 chr11 47891160 47891208 -100892264 - MIR SINE MIR -13 249 200 190 284 95 43 chr11 47891259 47891375 -100892097 + L2 LINE L2 2048 2169 -1145 268 286 154 0 chr11 47891470 47891561 -100891911 - MIR SINE MIR -71 191 87 647 180 73 27 chr11 47892257 47892467 -100891005 - MIR SINE MIR -7 255 20 329 227 34 34 chr11 47895324 47895443 -100888029 + L1ME3A LINE L1 5975 6093 -77 733 284 67 34 chr11 47896810 47897049 -100886423 - MIR SINE MIR -11 251 5 287 242 38 106 chr11 47897790 47897922 -100885550 - MIR3 SINE MIR -71 137 15 485 215 87 0 chr11 47898595 47898744 -100884728 + L1M4 LINE L1 2849 3010 -3136 584 96 0 0 chr11 47898744 47898827 -100884645 + MLT1B LTR MaLR 306 388 -2 1868 143 19 88 chr11 47898832 47899034 -100884438 + L1MC3 LINE L1 6734 6894 -891 2171 99 7 16 chr11 47899034 47899337 -100884135 + AluSx SINE Alu 3 302 -10 1868 143 19 88 chr11 47899337 47899555 -100883917 + L1MC3 LINE L1 6894 7125 -660 1445 212 3 0 chr11 47899555 47899847 -100883625 + AluJo SINE Alu 1 293 -19 321 296 81 97 chr11 47900343 47900529 -100882943 - MER5A DNA MER1_type -5 184 2 2287 96 53 28 chr11 47901077 47901432 -100882040 - THE1B LTR MaLR 0 364 1 25 0 0 0 chr11 47901714 47901739 -100881733 + AT_rich Low_complexity Low_complexity 1 25 0 685 241 52 11 chr11 47901749 47901923 -100881549 - MIR SINE MIR -68 194 14 301 282 48 10 chr11 47902217 47902320 -100881152 + L2 LINE L2 2877 2983 -289 581 335 102 50 chr11 47903309 47903709 -100879763 + L2 LINE L2 2851 3271 -1 939 118 0 0 chr11 47903821 47903974 -100879498 + (TCCA)n Simple_repeat Simple_repeat 4 156 0 206 332 93 18 chr11 47904472 47904698 -100878774 - L2 LINE L2 -221 3051 2809 238 254 164 9 chr11 47904742 47904852 -100878620 - L2 LINE L2 0 3272 3146 242 287 73 69 chr11 47904949 47905098 -100878374 + L2 LINE L2 2554 2701 -613 1806 129 13 16 chr11 47905098 47905401 -100878071 + AluJb SINE Alu 1 302 -10 242 287 73 69 chr11 47905401 47905554 -100877918 + L2 LINE L2 2701 2857 -457 21 0 0 0 chr11 47906543 47906564 -100876908 + AT_rich Low_complexity Low_complexity 1 21 0 2070 123 3 7 chr11 47906606 47906916 -100876556 - AluJb SINE Alu 0 312 4 614 259 20 0 chr11 47907711 47907858 -100875614 - MLT1K LTR MaLR -25 563 414 699 313 95 32 chr11 47907870 47908302 -100875170 - L2 LINE L2 -1241 2073 1615 239 193 239 23 chr11 47908537 47908625 -100874847 + MIR3 SINE MIR 74 180 -28 18779 52 2 7 chr11 47909110 47911403 -100872069 - L1P LINE L1 -3864 2282 2 5208 244 62 27 chr11 47911435 47913270 -100870202 + L1M4 LINE L1 3352 5250 -896 4781 41 0 44 chr11 47913432 47914046 -100869426 + L1PA4 LINE L1 5569 6155 0 396 55 0 0 chr11 47914123 47914178 -100869294 + (TG)n Simple_repeat Simple_repeat 2 56 0 2355 255 122 35 chr11 47914184 47916481 -100866991 - L1MEc LINE L1 -2900 3315 857 2205 59 36 13 chr11 47916709 47917013 -100866459 - AluY SINE Alu 0 311 1 1525 243 45 34 chr11 47917449 47917919 -100865553 - L1MEc LINE L1 -1944 4271 3797 2721 174 33 39 chr11 47917924 47918560 -100864912 - L1MC3 LINE L1 -16 7769 7138 1947 247 76 71 chr11 47918663 47918989 -100864483 - L1MEc LINE L1 -3519 2696 2373 2144 125 6 0 chr11 47918989 47919300 -100864172 - AluSq SINE Alu 0 313 1 1947 247 76 71 chr11 47919300 47919781 -100863691 - L1MEc LINE L1 -3842 2373 1896 204 40 0 0 chr11 47919781 47919806 -100863666 + (CA)n Simple_repeat Simple_repeat 2 26 0 1947 247 76 71 chr11 47919806 47920842 -100862630 - L1MEc LINE L1 -4319 1896 872 6134 150 20 15 chr11 47920845 47921122 -100862350 + L1PB2 LINE L1 4061 4335 -1816 261 0 0 0 chr11 47921122 47921151 -100862321 + (CA)n Simple_repeat Simple_repeat 2 30 0 6134 150 20 15 chr11 47921151 47922128 -100861344 + L1PB2 LINE L1 4335 5321 -830 225 0 0 0 chr11 47922128 47922153 -100861319 + (CA)n Simple_repeat Simple_repeat 2 26 0 6134 150 20 15 chr11 47922153 47922987 -100860485 + L1PB2 LINE L1 5321 6149 -2 1302 309 87 19 chr11 47923042 47923637 -100859835 - ERVL LTR ERVL -672 5092 4457 553 269 84 27 chr11 47923659 47923956 -100859516 + HAL1 LINE L1 2165 2478 -29 443 270 7 66 chr11 47924094 47924246 -100859226 - MER91B DNA MER1_type -28 162 20 781 332 39 8 chr11 47925080 47925435 -100858037 - L3 LINE CR1 -1 1576 1211 1696 125 54 54 chr11 47926811 47927108 -100856364 + AluSg SINE Alu 1 297 -13 409 195 12 12 chr11 47927111 47927193 -100856279 - MIR SINE MIR -6 256 175 245 230 95 0 chr11 47927594 47927668 -100855804 - MIR SINE MIR -106 156 76 1250 237 174 9 chr11 47928067 47928493 -100854979 + MLT1G LTR MaLR 95 590 0 233 211 336 0 chr11 47929464 47929568 -100853904 + MIR3 SINE MIR 44 182 -26 1777 204 37 3 chr11 47929614 47929967 -100853505 + MLT1A1 LTR MaLR 1 365 0 286 110 21 7 chr11 47930362 47930421 -100853051 + MIR SINE MIR 112 173 -35 234 276 97 54 chr11 47930452 47930643 -100852829 - MIR SINE MIR -62 146 3 526 263 30 96 chr11 47931408 47931709 -100851763 - L2 LINE L2 -5 3308 3028 2189 99 6 13 chr11 47931724 47932037 -100851435 + AluSq SINE Alu 3 313 0 488 275 50 0 chr11 47932209 47932369 -100851103 + L1ME3A LINE L1 6003 6170 0 264 343 0 0 chr11 47932470 47932540 -100850932 + MIR SINE MIR 185 254 -8 309 197 111 43 chr11 47933163 47933280 -100850192 - MIR SINE MIR 0 262 138 1549 244 144 17 chr11 47933295 47933759 -100849713 - MLT1H LTR MaLR -25 524 2 396 284 28 51 chr11 47934003 47934179 -100849293 - MIR SINE MIR -78 184 13 215 200 0 0 chr11 47935009 47935054 -100848418 - MIR SINE MIR -71 137 93 348 249 17 98 chr11 47935133 47935235 -100848237 + L2 LINE L2 2599 2683 -631 862 174 0 0 chr11 47935235 47935367 -100848105 - FLAM_C SINE Alu -1 132 1 348 249 17 98 chr11 47935367 47935437 -100848035 + L2 LINE L2 2683 2757 -557 303 222 16 0 chr11 47935501 47935564 -100847908 - MER63 DNA MER1_type -1 1061 998 412 219 52 10 chr11 47935564 47935660 -100847812 - MER63 DNA MER1_type -311 751 26 634 313 71 60 chr11 47935691 47936043 -100847429 + L2 LINE L2 2917 3272 0 756 237 167 44 chr11 47936123 47936465 -100847007 + MLT1J2 LTR MaLR 67 450 0 330 321 76 0 chr11 47936468 47936599 -100846873 + MIR3 SINE MIR 60 200 -8 195 244 0 0 chr11 47937163 47937204 -100846268 + MIR SINE MIR 48 88 -120 250 171 0 0 chr11 47937630 47937671 -100845801 + L2 LINE L2 3264 3304 -9 184 328 126 34 chr11 47937823 47938061 -100845411 - L2 LINE L2 -400 2914 2655 568 259 86 79 chr11 47938074 47938485 -100844987 + MLT1G1 LTR MaLR 125 593 -2 246 219 62 62 chr11 47938523 47938619 -100844853 - L2 LINE L2 -1038 2276 2181 184 269 58 0 chr11 47938638 47938690 -100844782 + L2 LINE L2 3213 3267 -5 218 276 55 41 chr11 47939285 47939430 -100844042 + MIR3 SINE MIR 37 183 -25 233 139 0 0 chr11 47941264 47941300 -100842172 + L3 LINE CR1 1523 1558 -19 218 224 24 106 chr11 47941316 47941401 -100842071 + L2 LINE L2 2680 2757 -557 556 298 79 14 chr11 47941436 47941651 -100841821 - MIR SINE MIR -21 241 13 257 254 30 0 chr11 47942006 47942073 -100841399 + L2 LINE L2 3244 3312 -1 1740 190 3 3 chr11 47942725 47943015 -100840457 - AluJb SINE Alu -16 296 7 1344 208 96 3 chr11 47943062 47943463 -100840009 + Charlie4a DNA MER1_type 18 456 -52 2082 137 3 7 chr11 47944203 47944502 -100838970 - AluSx SINE Alu -14 298 1 2282 112 0 3 chr11 47944667 47944961 -100838511 - AluSx SINE Alu -7 305 13 830 262 100 4 chr11 47945116 47945387 -100838085 + L1ME3A LINE L1 5863 6159 -11 192 202 312 18 chr11 47945764 47945873 -100837599 - L2 LINE L2 -5 3308 3168 724 246 81 65 chr11 47946222 47946293 -100837179 - MIR SINE MIR -3 259 191 1784 157 7 24 chr11 47946293 47946586 -100836886 - AluJo SINE Alu -24 288 1 724 246 81 65 chr11 47946586 47946762 -100836710 - MIR SINE MIR -71 191 8 514 298 30 125 chr11 47947866 47948378 -100835094 - L2 LINE L2 -20 3252 2791 3775 159 52 29 chr11 47948489 47949219 -100834253 - L1MB5 LINE L1 0 6174 5428 4031 62 18 0 chr11 47949304 47949806 -100833666 - L1PA7 LINE L1 -5 6149 5639 231 354 132 14 chr11 47951758 47951902 -100831570 + MIR3 SINE MIR 12 172 -36 535 305 12 0 chr11 47952145 47952309 -100831163 - L2 LINE L2 -2 3311 3146 968 254 76 6 chr11 47952505 47952847 -100830625 + LTR33 LTR ERVL 154 519 -2 204 40 0 0 chr11 47953517 47953542 -100829930 + (TTTC)n Simple_repeat Simple_repeat 3 27 0 3628 73 2 2 chr11 47953543 47954007 -100829465 - L1PA7 LINE L1 -14 6140 5677 257 322 129 34 chr11 47954215 47954527 -100828945 + L2 LINE L2 2702 3053 -219 498 298 42 12 chr11 47954637 47954805 -100828667 + MER117 DNA MER1_type 1 173 -24 530 282 56 0 chr11 47956122 47956264 -100827208 + MIR SINE MIR 1 150 -112 356 54 0 18 chr11 47956521 47956577 -100826895 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 731 286 83 0 chr11 47957205 47957422 -100826050 + MIR SINE MIR 28 262 0 200 262 16 16 chr11 47957592 47957653 -100825819 + L2 LINE L2 3176 3236 -77 313 308 77 0 chr11 47958386 47958490 -100824982 + MER5A DNA MER1_type 72 183 -6 589 250 85 27 chr11 47958655 47958879 -100824593 + MIR SINE MIR 2 238 -24 248 149 21 0 chr11 47958941 47958988 -100824484 + MLT1J2 LTR MaLR 367 414 -36 366 23 0 0 chr11 47959355 47959398 -100824074 + (TG)n Simple_repeat Simple_repeat 2 44 0 704 201 201 0 chr11 47959840 47960044 -100823428 - L1ME2 LINE L1 -1 6163 5919 376 117 17 0 chr11 47960044 47960104 -100823368 - MER20 DNA MER1_type 0 219 159 1346 241 24 3 chr11 47960118 47960450 -100823022 + MLT1A1 LTR MaLR 19 357 -8 545 146 6 140 chr11 47960464 47960628 -100822844 - MER20 DNA MER1_type -74 145 4 1754 236 34 12 chr11 47960636 47961135 -100822337 - L1ME2 LINE L1 -243 5921 5412 1461 237 92 17 chr11 47961154 47961682 -100821790 - MLT1F1 LTR MaLR 0 567 3 1008 254 16 16 chr11 47961916 47962168 -100821304 - MIR SINE MIR -8 254 3 470 278 26 0 chr11 47962615 47962730 -100820742 + L2 LINE L2 3195 3312 -1 4910 147 12 20 chr11 47963060 47963131 -100820341 - L1MB3 LINE L1 0 6183 6113 414 0 0 0 chr11 47963131 47963177 -100820295 + (TG)n Simple_repeat Simple_repeat 1 46 0 1764 173 4 0 chr11 47963177 47963455 -100820017 - AluJb SINE Alu -33 279 1 4910 147 12 20 chr11 47963455 47963960 -100819512 - L1MB3 LINE L1 -69 6114 5607 2158 131 3 3 chr11 47963960 47964266 -100819206 - AluSx SINE Alu -6 306 1 2229 88 3 24 chr11 47964273 47964570 -100818902 - AluY SINE Alu 0 311 21 4910 147 12 20 chr11 47964570 47964889 -100818583 - L1MB3 LINE L1 -582 5601 5285 751 223 16 27 chr11 47965854 47966042 -100817430 - MLT1L LTR MaLR 0 615 430 271 250 163 25 chr11 47966904 47966984 -100816488 + MIR SINE MIR 68 158 -104 350 233 35 0 chr11 47967467 47967553 -100815919 - MIR SINE MIR -88 120 32 281 231 90 0 chr11 47967936 47968014 -100815458 + MIR SINE MIR 99 183 -79 457 356 47 7 chr11 47968749 47968898 -100814574 - MER91A DNA MER1_type -40 156 2 200 344 16 0 chr11 47968902 47968963 -100814509 - L2 LINE L2 -13 3300 3239 344 274 166 38 chr11 47969175 47969638 -100813834 - L2 LINE L2 -72 3241 2732 273 270 14 0 chr11 47969646 47969720 -100813752 + GA-rich Low_complexity Low_complexity 1 75 0 576 345 47 4 chr11 47970507 47970742 -100812730 + MIR SINE MIR 15 259 -3 1811 177 0 3 chr11 47970774 47971062 -100812410 - AluJb SINE Alu -21 291 5 865 282 58 23 chr11 47971802 47972149 -100811323 - MLT1J2 LTR MaLR -91 359 1 409 296 38 15 chr11 47972463 47972595 -100810877 - MIR3 SINE MIR -65 143 9 2495 82 0 3 chr11 47974487 47974793 -100808679 - AluSc SINE Alu -4 305 1 496 311 91 5 chr11 47974802 47975011 -100808461 - MIR SINE MIR -13 249 23 420 260 32 24 chr11 47975486 47975609 -100807863 - L2 LINE L2 0 3313 3190 6742 56 6 1 chr11 47975995 47976887 -100806585 - L1PA6 LINE L1 -5 6149 5254 356 243 136 0 chr11 47977212 47977315 -100806157 + MIR SINE MIR 37 153 -55 358 335 23 28 chr11 47977350 47977526 -100805946 + MIR SINE MIR 16 190 -72 250 255 245 0 chr11 47977542 47977644 -100805828 - L2 LINE L2 -9 3304 3178 536 277 15 8 chr11 47977777 47977907 -100805565 - MIR SINE MIR -130 132 2 340 330 142 0 chr11 47978008 47978184 -100805288 + L2 LINE L2 3113 3313 0 482 212 177 0 chr11 47981101 47981214 -100802258 + L2 LINE L2 3181 3313 0 248 308 171 0 chr11 47982320 47982437 -100801035 - MER5A DNA MER1_type 0 189 53 186 258 32 65 chr11 47982462 47982524 -100800948 - L3 LINE CR1 -67 1510 1451 25 51 0 0 chr11 47982592 47982631 -100800841 + AT_rich Low_complexity Low_complexity 1 39 0 2344 93 0 3 chr11 47983312 47983613 -100799859 - AluSq SINE Alu -13 300 1 274 286 88 71 chr11 47983925 47984107 -100799365 - L3 LINE CR1 -263 1314 1130 222 219 86 76 chr11 47984532 47984637 -100798835 + L2 LINE L2 3208 3313 0 473 281 69 42 chr11 47985863 47986151 -100797321 - L1ME3A LINE L1 -275 5895 5600 388 174 43 0 chr11 47986966 47987035 -100796437 + MIR3 SINE MIR 134 205 -3 233 167 0 0 chr11 47987055 47987091 -100796381 + MIR3 SINE MIR 170 205 -3 1870 166 3 13 chr11 47987108 47987409 -100796063 - AluJb SINE Alu -14 298 1 236 315 9 46 chr11 47988580 47988688 -100794784 - MIR SINE MIR -138 124 21 342 91 0 0 chr11 47989201 47989256 -100794216 + (TC)n Simple_repeat Simple_repeat 2 56 0 324 0 0 0 chr11 47989256 47989292 -100794180 + (CA)n Simple_repeat Simple_repeat 1 36 0 520 265 136 20 chr11 47989306 47989659 -100793813 - L2 LINE L2 -245 3068 2686 42 20 0 0 chr11 47995743 47995792 -100787680 + AT_rich Low_complexity Low_complexity 1 49 0 468 48 0 0 chr11 47996384 47996447 -100787025 + (TG)n Simple_repeat Simple_repeat 2 64 0 271 18 89 0 chr11 47997621 47997677 -100785795 + (TA)n Simple_repeat Simple_repeat 2 62 0 1837 158 45 0 chr11 48002577 48002868 -100780604 - AluJb SINE Alu -8 304 1 299 160 0 0 chr11 48004509 48004559 -100778913 - L2 LINE L2 -1 3312 3263 354 341 84 11 chr11 48005273 48005452 -100778020 + MIR SINE MIR 7 198 -64 446 200 22 0 chr11 48006938 48007028 -100776444 - MIR SINE MIR -121 141 50 309 252 162 15 chr11 48007426 48007658 -100775814 + L1ME4a LINE L1 5337 5602 -519 490 300 164 6 chr11 48007684 48008044 -100775428 + L1ME4a LINE L1 5686 6102 -19 186 244 0 0 chr11 48012077 48012122 -100771350 + MIR SINE MIR 48 92 -116 724 122 0 0 chr11 48014005 48014120 -100769352 - L1PB1 LINE L1 -3 6148 6034 527 110 0 0 chr11 48014124 48014206 -100769266 + L1PB1 LINE L1 5946 6027 -124 330 288 159 31 chr11 48015055 48015218 -100768254 + MIR3 SINE MIR 22 205 -3 262 259 69 0 chr11 48015816 48015947 -100767525 + L2 LINE L2 2836 2975 -338 696 182 149 0 chr11 48016089 48016237 -100767235 - MER45A DNA AcHobo -8 170 1 366 252 48 0 chr11 48016334 48016437 -100767035 + L2 LINE L2 3162 3269 -3 247 289 19 10 chr11 48016438 48016542 -100766930 + GA-rich Low_complexity Low_complexity 4 108 0 22 35 0 0 chr11 48016721 48016750 -100766722 + GC_rich Low_complexity Low_complexity 1 29 0 277 337 80 22 chr11 48017229 48017417 -100766055 + MIR SINE MIR 20 216 -46 193 333 17 58 chr11 48018192 48018312 -100765160 + MIR SINE MIR 76 190 -72 786 193 135 16 chr11 48018313 48018505 -100764967 - MER20 DNA MER1_type -2 217 3 264 286 101 25 chr11 48019000 48019119 -100764353 + MIR SINE MIR 20 147 -115 416 192 61 10 chr11 48019129 48019228 -100764244 + MER5B DNA MER1_type 1 104 -74 231 174 65 0 chr11 48021644 48021690 -100761782 + L2 LINE L2 2088 2136 -1178 462 331 75 28 chr11 48021707 48022094 -100761378 - HAL1 LINE L1 -873 1634 1230 1422 77 0 0 chr11 48022108 48022278 -100761194 + AluY SINE Alu 127 296 -15 579 178 12 137 chr11 48022291 48022532 -100760940 - L1MEd LINE L1 -5014 1105 895 239 288 85 28 chr11 48022797 48022974 -100760498 + L2 LINE L2 2671 2857 -457 356 305 47 95 chr11 48023405 48023743 -100759729 + L2 LINE L2 2992 3313 0 1880 146 0 57 chr11 48023807 48023918 -100759554 + AluJo SINE Alu 15 131 -181 2310 84 3 20 chr11 48023918 48024216 -100759256 - AluY SINE Alu -18 293 1 1880 146 0 57 chr11 48024216 48024419 -100759053 + AluJo SINE Alu 131 311 -1 306 132 0 0 chr11 48024419 48024472 -100759000 + (GGAA)n Simple_repeat Simple_repeat 1 53 0 1859 170 16 19 chr11 48024516 48024881 -100758591 - MER63 DNA MER1_type -1 1061 698 222 37 0 0 chr11 48024888 48024915 -100758557 + (CACCAT)n Simple_repeat Simple_repeat 6 32 0 397 314 64 0 chr11 48025317 48025473 -100757999 + MIR SINE MIR 23 188 -74 314 310 58 71 chr11 48025769 48026079 -100757393 - L2 LINE L2 0 3272 2967 512 368 123 0 chr11 48026401 48026711 -100756761 + L3 LINE CR1 1207 1554 -23 445 273 190 28 chr11 48026851 48027067 -100756405 - MIR SINE MIR -2 260 10 2689 50 0 0 chr11 48027868 48028209 -100755263 - L1PA5 LINE L1 0 6154 5814 2632 167 20 4 chr11 48028224 48028732 -100754740 - L1MA10 LINE L1 -4 6330 5815 418 302 17 41 chr11 48028905 48029077 -100754395 - MIR SINE MIR -48 214 47 201 339 0 0 chr11 48029539 48029604 -100753868 - MER91B DNA MER1_type -124 66 2 3011 163 76 65 chr11 48029640 48030026 -100753446 + L1MB8 LINE L1 5417 5797 -381 1981 156 6 13 chr11 48030026 48030340 -100753132 + AluSx SINE Alu 1 312 0 3011 163 76 65 chr11 48030340 48030707 -100752765 + L1MB8 LINE L1 5797 6178 0 365 307 30 13 chr11 48030895 48031004 -100752468 + MIR SINE MIR 43 155 -106 2911 10 0 0 chr11 48031004 48031313 -100752159 + AluYa5 SINE Alu 1 309 -2 365 307 30 13 chr11 48031313 48031359 -100752113 + MIR SINE MIR 155 199 -62 186 189 0 0 chr11 48031374 48031411 -100752061 + (TTA)n Simple_repeat Simple_repeat 2 38 0 287 250 10 87 chr11 48032116 48032164 -100751308 + MLT1H LTR MaLR 454 491 -58 1455 186 100 3 chr11 48032164 48032475 -100750997 + MER58B DNA MER1_type 1 341 0 287 250 10 87 chr11 48032475 48032530 -100750942 + MLT1H LTR MaLR 491 549 0 864 201 13 0 chr11 48032646 48032828 -100750644 + AluJo SINE Alu 127 310 0 1536 83 0 5 chr11 48033831 48034089 -100749383 + L1PA8 LINE L1 5940 6196 0 1590 201 79 61 chr11 48034099 48034982 -100748490 + L1MC4 LINE L1 6727 7593 -449 1154 221 20 49 chr11 48034982 48035330 -100748142 + MER58B DNA MER1_type 1 338 -3 1590 201 79 61 chr11 48035330 48035449 -100748023 + L1MC4 LINE L1 7593 7708 -334 2162 137 0 3 chr11 48035449 48035748 -100747724 + AluSx SINE Alu 1 298 -14 189 107 0 0 chr11 48035748 48035776 -100747696 + (TG)n Simple_repeat Simple_repeat 2 29 0 1590 201 79 61 chr11 48035776 48035916 -100747556 + L1MC4 LINE L1 7707 8042 0 2301 89 4 0 chr11 48036696 48037005 -100746467 + AluSp SINE Alu 1 310 0 929 267 17 4 chr11 48037458 48037704 -100745768 + MIR SINE MIR 3 252 -10 393 22 0 0 chr11 48038053 48038099 -100745373 + (CA)n Simple_repeat Simple_repeat 2 47 0 187 342 88 9 chr11 48039066 48039180 -100744292 + MIR SINE MIR 123 245 -17 249 336 88 0 chr11 48039183 48039308 -100744164 + L2 LINE L2 1768 1903 -1411 2141 181 81 33 chr11 48039684 48040166 -100743306 - MLT1D LTR MaLR 0 505 1 796 194 11 63 chr11 48040532 48040723 -100742749 - MER20 DNA MER1_type -38 181 1 1407 310 90 31 chr11 48040731 48042084 -100741388 + L2 LINE L2 1877 3311 -2 390 282 0 24 chr11 48042262 48042386 -100741086 + L2 LINE L2 3153 3273 -40 205 200 18 18 chr11 48043329 48043384 -100740088 + MIR SINE MIR 101 155 -107 23 54 0 0 chr11 48045061 48045098 -100738374 + GC_rich Low_complexity Low_complexity 1 37 0 25 0 0 0 chr11 48045117 48045142 -100738330 + GC_rich Low_complexity Low_complexity 1 25 0 188 86 29 0 chr11 48045177 48045212 -100738260 + (CCCGG)n Simple_repeat Simple_repeat 5 40 0 22 70 0 0 chr11 48045330 48045373 -100738099 + GC_rich Low_complexity Low_complexity 1 43 0 194 229 0 21 chr11 48045708 48045756 -100737716 - MIR SINE MIR -80 128 82 239 215 139 25 chr11 48046034 48046113 -100737359 + MIR SINE MIR 13 100 -162 1185 229 96 10 chr11 48046132 48046446 -100737026 + MLT1A2 LTR MaLR 34 374 0 295 208 14 14 chr11 48046446 48046518 -100736954 + MIR SINE MIR 95 166 -96 338 256 111 0 chr11 48046977 48047067 -100736405 + L2 LINE L2 3134 3233 -39 489 257 191 0 chr11 48047067 48047203 -100736269 + MER96 DNA MER1_type? 1 162 -13 266 250 14 14 chr11 48047541 48047613 -100735859 + MIR SINE MIR 83 154 -108 274 366 0 16 chr11 48047681 48047804 -100735668 + GA-rich Low_complexity Low_complexity 2 122 0 293 342 53 9 chr11 48048917 48049031 -100734441 + MIR SINE MIR 30 148 -60 355 297 17 0 chr11 48049281 48049399 -100734073 + MIR SINE MIR 57 176 -86 22 56 0 0 chr11 48049435 48049471 -100734001 + AT_rich Low_complexity Low_complexity 1 36 0 1825 125 28 10 chr11 48049507 48049796 -100733676 - AluSx SINE Alu -18 294 1 2627 236 40 52 chr11 48049900 48050915 -100732557 + L1MC1 LINE L1 5319 6321 -12 227 255 0 0 chr11 48051295 48051346 -100732126 + L2 LINE L2 3263 3313 0 1034 224 73 48 chr11 48051648 48052006 -100731466 + L1ME3A LINE L1 5794 6160 -10 2361 79 0 0 chr11 48052254 48052557 -100730915 - AluSq SINE Alu -10 303 1 263 356 10 0 chr11 48052694 48052795 -100730677 + MLT1L LTR MaLR 99 200 -415 1407 155 25 2 chr11 48053036 48053318 -100730154 + MER2 DNA MER2_type 9 345 0 1404 284 89 45 chr11 48053318 48053967 -100729505 + MER21B LTR ERV1 20 697 -166 189 0 0 0 chr11 48053969 48053990 -100729482 + (AATTG)n Simple_repeat Simple_repeat 1 21 0 303 248 108 45 chr11 48054047 48054204 -100729268 + MLT1L LTR MaLR 422 615 0 511 276 126 66 chr11 48054402 48054497 -100728975 + L1MC/D LINE L1 5518 5606 -2202 2065 126 0 0 chr11 48054497 48054823 -100728649 + AluSx SINE Alu 1 312 0 511 276 126 66 chr11 48054823 48055013 -100728459 + L1MC/D LINE L1 5606 5820 -1988 1061 282 119 18 chr11 48055034 48055538 -100727934 + L2 LINE L2 2560 3140 -173 2134 120 0 0 chr11 48055538 48055838 -100727634 - AluSx SINE Alu -12 300 1 1061 282 119 18 chr11 48055838 48056028 -100727444 + L2 LINE L2 3140 3309 -4 889 263 70 8 chr11 48056085 48056219 -100727253 + MIR SINE MIR 1 125 -137 1045 39 78 0 chr11 48056219 48056348 -100727124 - MER85 DNA T2_type 0 139 1 889 263 70 8 chr11 48056348 48056456 -100727016 + MIR SINE MIR 125 258 -4 351 100 0 0 chr11 48056665 48056725 -100726747 + L1MC5 LINE L1 7836 7895 -66 262 229 76 93 chr11 48057171 48057291 -100726181 - MIR SINE MIR -46 162 44 225 268 106 0 chr11 48057289 48057412 -100726060 - MIR3 SINE MIR -23 185 50 * 184 200 100 50 chr11 48057785 48057828 -100725644 - L3b LINE CR1 -11 1572 1527 367 243 10 29 chr11 48057828 48057931 -100725541 + MER5A DNA MER1_type 4 104 -85 206 303 26 26 chr11 48057868 48057944 -100725528 - MER5A DNA MER1_type -31 158 83 * 221 159 114 0 chr11 48058026 48058070 -100725402 - L3 LINE CR1 -115 1462 1414 302 0 26 0 chr11 48058099 48058137 -100725335 + (TG)n Simple_repeat Simple_repeat 1 39 0 447 268 108 75 chr11 48058143 48058505 -100724967 + LTR40c LTR ERVL 5 378 -87 200 194 0 0 chr11 48058568 48058604 -100724868 + (TG)n Simple_repeat Simple_repeat 2 37 0 378 287 47 27 chr11 48058710 48058860 -100724612 - MIR SINE MIR -8 254 102 310 229 121 0 chr11 48059231 48059314 -100724158 - L2 LINE L2 -31 3241 3149 846 264 75 68 chr11 48059390 48059829 -100723643 + MLT1K LTR MaLR 138 579 -9 267 224 39 0 chr11 48059840 48059917 -100723555 - MIR SINE MIR -62 146 80 660 275 81 40 chr11 48060143 48060390 -100723082 + MER102b DNA MER1_type 81 337 -4 328 271 24 0 chr11 48060495 48060580 -100722892 + L2 LINE L2 3226 3312 -1 519 246 62 56 chr11 48060712 48060891 -100722581 + MIR SINE MIR 2 181 -81 391 229 57 9 chr11 48060948 48061053 -100722419 + MIR3 SINE MIR 88 197 -11 402 268 105 36 chr11 48061731 48061912 -100721560 - MIR SINE MIR -54 154 17 398 335 4 0 chr11 48062156 48062296 -100721176 - MIR3 SINE MIR -45 163 19 297 200 36 0 chr11 48063027 48063082 -100720390 - L2 LINE L2 -2 3270 3214 558 252 229 0 chr11 48063133 48063343 -100720129 + MIR SINE MIR 5 262 0 194 317 122 41 chr11 48063450 48063573 -100719899 + MIR SINE MIR 32 164 -98 453 304 8 0 chr11 48063911 48064036 -100719436 + MIR SINE MIR 19 144 -64 808 268 22 18 chr11 48064658 48064882 -100718590 - MIR SINE MIR -10 252 28 293 352 69 0 chr11 48064957 48065102 -100718370 + L3 LINE CR1 1213 1367 -210 259 267 0 0 chr11 48065291 48065366 -100718106 + L1MC4a LINE L1 5852 5926 -1882 269 242 0 0 chr11 48065618 48065680 -100717792 + L3 LINE CR1 1402 1463 -114 306 268 77 10 chr11 48066306 48066449 -100717023 + MIR SINE MIR 35 192 -63 1823 133 14 89 chr11 48068362 48068722 -100714750 + MER1B DNA MER1_type 5 337 0 469 274 80 43 chr11 48068732 48069153 -100714319 + L2 LINE L2 2640 3084 -188 283 277 29 24 chr11 48069209 48069423 -100714049 - MER5C DNA MER1_type -1 323 17 668 260 29 6 chr11 48069819 48069992 -100713480 + MIR SINE MIR 14 190 -72 398 266 39 23 chr11 48071010 48071138 -100712334 + MIR SINE MIR 35 164 -98 1884 154 0 3 chr11 48071515 48071820 -100711652 - AluJo SINE Alu -8 304 1 323 245 71 10 chr11 48071942 48072040 -100711432 + MIR SINE MIR 78 181 -81 188 214 114 43 chr11 48072145 48072215 -100711257 - MIR SINE MIR -94 168 94 260 362 16 8 chr11 48072446 48072573 -100710899 - MIR SINE MIR -88 174 47 257 260 167 40 chr11 48072839 48072989 -100710483 + L2 LINE L2 2590 2758 -556 610 286 116 0 chr11 48073077 48073276 -100710196 + MIR SINE MIR 28 249 -13 * 692 259 92 57 chr11 48073274 48073526 -100709946 - L2 LINE L2 0 3313 3041 1848 142 7 4 chr11 48073526 48073827 -100709645 + AluSx SINE Alu 1 302 0 692 259 92 57 chr11 48073827 48073943 -100709529 - L2 LINE L2 -272 3041 2931 599 330 117 22 chr11 48073974 48074383 -100709089 + L2 LINE L2 2824 3271 -1 441 328 144 5 chr11 48074866 48075088 -100708384 + MIR SINE MIR 13 261 -1 189 327 102 22 chr11 48075591 48075929 -100707543 - L2 LINE L2 -161 3111 2681 1089 280 56 20 chr11 48076009 48076402 -100707070 - MLT1I LTR MaLR 0 409 3 876 294 134 20 chr11 48076499 48077050 -100706422 - L2 LINE L2 -423 2891 2278 294 339 83 42 chr11 48077470 48077662 -100705810 - MIR SINE MIR -10 252 53 22 35 0 0 chr11 48078756 48078785 -100704687 + GC_rich Low_complexity Low_complexity 1 29 0 327 182 50 25 chr11 48078827 48078948 -100704524 + C-rich Low_complexity Low_complexity 6 129 0 270 222 41 29 chr11 48079027 48079198 -100704274 + (CGG)n Simple_repeat Simple_repeat 3 175 0 185 191 0 24 chr11 48079939 48079981 -100703491 + MIR SINE MIR 104 144 -118 444 307 61 24 chr11 48080588 48080800 -100702672 + MIR SINE MIR 29 248 -14 192 308 98 15 chr11 48081168 48081301 -100702171 - L2 LINE L2 -346 2968 2825 214 331 158 0 chr11 48081572 48081705 -100701767 + MIR3 SINE MIR 15 168 -40 483 249 44 25 chr11 48082073 48082288 -100701184 - MIR SINE MIR -31 231 8 511 301 83 16 chr11 48083367 48083782 -100699690 - L2 LINE L2 -209 3104 2666 1008 279 60 82 chr11 48083867 48084405 -100699067 + LTR67 LTR ERVL 6 531 -26 499 165 11 11 chr11 48084391 48084482 -100698990 - MLT1F1 LTR MaLR -6 561 471 * 758 230 24 6 chr11 48084481 48084646 -100698826 - MLT1F LTR MaLR -372 170 3 437 329 107 5 chr11 48085196 48085412 -100698060 + L3 LINE CR1 1311 1548 -29 388 248 22 58 chr11 48085481 48085618 -100697854 + MIR SINE MIR 16 147 -61 461 298 57 81 chr11 48086141 48086299 -100697173 - L1ME LINE L1 -370 5751 5591 2273 91 0 0 chr11 48086299 48086597 -100696875 - AluSg SINE Alu -4 306 9 461 298 57 81 chr11 48086597 48086944 -100696528 - L1ME LINE L1 -530 5591 5258 416 365 141 7 chr11 48087002 48087292 -100696180 - L1ME LINE L1 -951 5195 4867 1643 193 3 7 chr11 48087311 48087607 -100695865 - AluJb SINE Alu -17 295 1 479 255 144 16 chr11 48087615 48087858 -100695614 - HAL1 LINE L1 -1490 1017 744 285 98 0 0 chr11 48087930 48087971 -100695501 + (TG)n Simple_repeat Simple_repeat 1 41 0 1618 166 37 17 chr11 48088128 48088423 -100695049 - AluJo SINE Alu -11 301 1 1947 92 15 0 chr11 48088434 48088696 -100694776 - AluSx SINE Alu -2 310 45 1996 85 0 72 chr11 48088701 48089032 -100694440 - AluSx SINE Alu 0 309 1 410 294 41 53 chr11 48089172 48089417 -100694055 - HAL1 LINE L1 -2112 395 154 225 212 30 15 chr11 48089703 48089769 -100693703 + (TG)n Simple_repeat Simple_repeat 2 68 0 24311 28 4 1 chr11 48090883 48094093 -100689379 + L1P2 LINE L1 2286 5506 -649 276 137 0 0 chr11 48094322 48094373 -100689099 + (GA)n Simple_repeat Simple_repeat 2 52 0 352 317 102 68 chr11 48094923 48095362 -100688110 - L2 LINE L2 -1 3271 2818 296 221 29 0 chr11 48095804 48095872 -100687600 - MIR SINE MIR -68 140 71 205 259 0 86 chr11 48096435 48096516 -100686956 + MIR3 SINE MIR 105 178 -30 1666 164 17 125 chr11 48096719 48097127 -100686345 + MLT1A1 LTR MaLR 2 365 0 313 308 70 28 chr11 48097199 48097342 -100686130 + L2 LINE L2 3153 3301 -12 2128 104 3 20 chr11 48097342 48097641 -100685831 + AluSx SINE Alu 1 294 -18 255 343 137 7 chr11 48097683 48097829 -100685643 + L2 LINE L2 3107 3271 -1 52 44 0 0 chr11 48098362 48098430 -100685042 + AT_rich Low_complexity Low_complexity 1 68 0 407 247 160 0 chr11 48098456 48098606 -100684866 - L1ME3 LINE L1 -14 6148 5975 371 268 0 10 chr11 48098616 48098713 -100684759 - MIR SINE MIR -110 152 57 192 250 0 0 chr11 48098765 48098829 -100684643 + CT-rich Low_complexity Low_complexity 3 66 0 205 321 57 29 chr11 48099206 48099346 -100684126 + L2 LINE L2 2920 3063 -209 2108 120 7 3 chr11 48100410 48100718 -100682754 - AluSc SINE Alu 0 309 1 745 276 50 13 chr11 48101007 48101246 -100682226 + MIR SINE MIR 15 262 0 1800 115 0 0 chr11 48102172 48102424 -100681048 + L1MA2 LINE L1 6053 6304 0 2020 132 10 3 chr11 48102521 48102824 -100680648 - AluSx SINE Alu -7 305 1 213 373 102 11 chr11 48102879 48103241 -100680231 + L2 LINE L2 2564 2958 -356 558 259 84 0 chr11 48103361 48103504 -100679968 + MIR SINE MIR 12 166 -96 181 410 36 7 chr11 48103541 48103680 -100679792 + L2 LINE L2 3171 3313 0 531 292 124 4 chr11 48104393 48104626 -100678846 + MIR SINE MIR 2 262 0 455 224 112 0 chr11 48104656 48104772 -100678700 - MIR3 SINE MIR -16 192 64 337 319 17 0 chr11 48104945 48105061 -100678411 - MIR SINE MIR -66 196 79 339 355 48 16 chr11 48105497 48105686 -100677786 + MIR SINE MIR 62 256 -6 746 278 144 35 chr11 48105714 48106060 -100677412 - L2 LINE L2 -4 3309 2926 1103 259 110 40 chr11 48106072 48106501 -100676971 - MLT1J LTR MaLR -52 459 1 763 130 0 31 chr11 48107059 48107220 -100676252 + (TTCC)n Simple_repeat Simple_repeat 2 157 0 309 353 7 7 chr11 48107326 48107465 -100676007 + CT-rich Low_complexity Low_complexity 1 139 0 430 310 102 0 chr11 48107698 48107876 -100675596 - MIR SINE MIR -7 255 62 220 200 29 0 chr11 48108271 48108341 -100675131 + (TGG)n Simple_repeat Simple_repeat 3 74 0 323 311 56 36 chr11 48108658 48108854 -100674618 + MER90 LTR ERV1 360 559 -16 1796 192 0 0 chr11 48109102 48109410 -100674062 + AluJb SINE Alu 1 308 -4 244 279 18 9 chr11 48210053 48210164 -100573308 - L1ME LINE L1 -356 5765 5654 189 94 0 0 chr11 48210165 48210197 -100573275 + (T)n Simple_repeat Simple_repeat 1 32 0 229 321 31 41 chr11 48210883 48211079 -100572393 + L1MC4a LINE L1 5753 5946 -1862 1761 85 0 0 chr11 48211092 48211304 -100572168 + AluSq SINE Alu 38 249 -64 412 253 110 20 chr11 48212319 48212465 -100571007 + MIR SINE MIR 82 240 -22 404 311 74 42 chr11 48213796 48213986 -100569486 + MIR SINE MIR 67 262 0 319 277 153 8 chr11 48214029 48214247 -100569225 - MIR SINE MIR -1 261 8 206 339 60 52 chr11 48214321 48214572 -100568900 + L2 LINE L2 2447 2699 -615 399 292 105 23 chr11 48214840 48215011 -100568461 - MIR3 SINE MIR -22 186 2 573 290 111 6 chr11 48215478 48215717 -100567755 + MIR SINE MIR 5 248 -14 569 258 18 26 chr11 48216410 48216585 -100566887 + MER5A DNA MER1_type 2 187 -2 669 193 0 0 chr11 48216825 48216975 -100566497 + (CCCA)n Simple_repeat Simple_repeat 2 151 0 199 319 139 40 chr11 48216984 48217235 -100566237 - L2 LINE L2 -25 3247 2972 291 221 163 0 chr11 48217507 48217593 -100565879 + MIR SINE MIR 54 153 -55 186 229 0 0 chr11 48218404 48218439 -100565033 - L2 LINE L2 -16 3256 3222 2313 92 10 3 chr11 48218761 48219056 -100564416 - AluSx SINE Alu -15 297 1 221 338 0 0 chr11 48219696 48219773 -100563699 + MIR SINE MIR 102 178 -84 413 231 194 6 chr11 48220014 48220174 -100563298 - MIR3 SINE MIR -8 200 11 385 260 107 20 chr11 48220422 48220572 -100562900 + MIR SINE MIR 38 200 -62 * 635 274 160 0 chr11 48220569 48220788 -100562684 - MIR SINE MIR -1 261 8 860 313 73 43 chr11 48221969 48222776 -100560696 - L2 LINE L2 -5 3267 2442 709 303 64 5 chr11 48223393 48223611 -100559861 + MIR SINE MIR 12 242 -20 200 182 0 0 chr11 48223641 48223674 -100559798 + CT-rich Low_complexity Low_complexity 4 36 0 2417 97 0 3 chr11 48224162 48224470 -100559002 - AluSx SINE Alu -5 307 1 1780 213 51 10 chr11 48224584 48224974 -100558498 - MLT2D LTR ERVL -8 406 1 2439 101 0 0 chr11 48225276 48225583 -100557889 - AluSp SINE Alu -6 307 1 206 254 175 0 chr11 48225586 48225649 -100557823 + MER5B DNA MER1_type 1 74 -104 410 324 103 12 chr11 48225859 48226263 -100557209 - L3 LINE CR1 -117 1460 948 352 258 207 24 chr11 48226548 48226761 -100556711 + MIR SINE MIR 10 261 -1 261 0 0 0 chr11 48227014 48227043 -100556429 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 1740 138 46 0 chr11 48227053 48227314 -100556158 - AluJo SINE Alu -39 273 1 2110 78 63 0 chr11 48227482 48227802 -100555670 - AluY SINE Alu 0 311 1 426 294 67 83 chr11 48227834 48228194 -100555278 - L2 LINE L2 -2 3270 2917 192 289 19 0 chr11 48228424 48228476 -100554996 - L2 LINE L2 0 3313 3261 1660 247 16 11 chr11 48228523 48228968 -100554504 - MLT1C LTR MaLR 0 467 21 236 286 134 0 chr11 48229104 48229216 -100554256 - L2 LINE L2 -227 3045 2919 215 274 0 0 chr11 48230180 48230231 -100553241 - L2 LINE L2 -1 3312 3262 442 285 112 43 chr11 48230232 48230537 -100552935 + L2 LINE L2 2980 3305 -8 305 270 0 0 chr11 48230591 48230665 -100552807 + MIR SINE MIR 73 146 -116 554 264 17 34 chr11 48230814 48230992 -100552480 + MIR SINE MIR 46 220 -42 362 274 89 6 chr11 48232181 48232338 -100551134 - MIR SINE MIR -67 195 26 196 243 200 0 chr11 48232333 48232403 -100551069 - MIR SINE MIR -118 144 61 * 2071 216 28 30 chr11 48232417 48232760 -100550712 + Charlie4a DNA MER1_type 4 347 -1614 2345 121 0 0 chr11 48232760 48233067 -100550405 - AluSq SINE Alu -6 307 1 2071 216 28 30 chr11 48233067 48233227 -100550245 + Charlie4a DNA MER1_type 347 506 -2 196 228 13 101 chr11 48233946 48234025 -100549447 + MIR SINE MIR 119 190 -72 686 285 211 14 chr11 48234184 48234545 -100548927 + MLT1H LTR MaLR 118 549 0 304 167 0 0 chr11 48234588 48234636 -100548836 + MLT1H LTR MaLR 502 549 0 468 296 134 6 chr11 48234757 48234936 -100548536 + MIR SINE MIR 9 210 -52 291 250 15 83 chr11 48235208 48235340 -100548132 - MIR SINE MIR -50 212 90 360 244 58 58 chr11 48236775 48236931 -100546541 - MIR SINE MIR -57 205 50 212 263 62 0 chr11 48236916 48236996 -100546476 + MIR SINE MIR 47 131 -131 * 354 185 193 34 chr11 48238508 48238627 -100544845 - MIR3 SINE MIR -37 171 34 195 180 2 97 chr11 48239906 48239977 -100543495 - MIR SINE MIR -63 145 80 316 208 10 83 chr11 48240957 48241053 -100542419 + MIR SINE MIR 52 140 -68 405 254 54 8 chr11 48241113 48241243 -100542229 - LTR33 LTR ERVL -12 509 374 362 307 21 21 chr11 48241599 48241739 -100541733 + CT-rich Low_complexity Low_complexity 2 141 0 225 132 0 0 chr11 48242071 48242109 -100541363 + (TG)n Simple_repeat Simple_repeat 2 39 0 273 261 162 18 chr11 48242196 48242307 -100541165 - MIR SINE MIR -12 250 124 225 204 0 41 chr11 48242388 48242437 -100541035 - L2 LINE L2 -10 3303 3257 377 298 15 23 chr11 48242496 48242627 -100540845 - MIR3 SINE MIR -2 206 77 1029 182 16 16 chr11 48243369 48243561 -100539911 - MER21B LTR ERV1 -396 467 276 288 255 123 0 chr11 48243908 48244053 -100539419 - L1ME LINE L1 -407 5759 5589 745 248 36 56 chr11 48244137 48244533 -100538939 - L1ME LINE L1 -580 5582 5192 339 288 78 41 chr11 48244677 48244896 -100538576 + Charlie8 DNA MER1_type 98 324 -2093 3554 212 71 12 chr11 48245581 48246384 -100537088 - MER21B LTR ERV1 0 863 14 433 228 0 0 chr11 48246406 48246485 -100536987 - MER21B LTR ERV1 -773 90 12 187 259 37 0 chr11 48247045 48247099 -100536373 - L2 LINE L2 -2 3311 3256 343 293 8 30 chr11 48247189 48247322 -100536150 + MIR SINE MIR 85 214 -48 1002 215 74 1 chr11 48248031 48248264 -100535208 + MIR SINE MIR 17 262 0 1974 99 8 0 chr11 48248278 48248531 -100534941 + AluSx SINE Alu 52 306 -6 279 314 91 33 chr11 48248532 48248653 -100534819 + MIR SINE MIR 8 135 -127 230 296 0 14 chr11 48248765 48248836 -100534636 + L2 LINE L2 3244 3313 0 2574 58 0 3 chr11 48249356 48249668 -100533804 + AluY SINE Alu 1 311 0 258 32 0 0 chr11 48249911 48249942 -100533530 + (T)n Simple_repeat Simple_repeat 1 31 0 348 237 28 0 chr11 48250427 48250539 -100532933 - L1MC4a LINE L1 -349 5772 5712 216 290 161 23 chr11 48250670 48250887 -100532585 + L2 LINE L2 2383 2629 -685 616 269 149 44 chr11 48250973 48251363 -100532109 + L2 LINE L2 2819 3249 -64 193 328 0 0 chr11 48251414 48251475 -100531997 - L2 LINE L2 -25 3247 3187 335 297 42 48 chr11 48251561 48251726 -100531746 - L2 LINE L2 -257 3015 2852 180 306 28 14 chr11 48251787 48251859 -100531613 + L2 LINE L2 3221 3293 -20 631 243 139 68 chr11 48251984 48252350 -100531122 - MLT1J2 LTR MaLR 0 450 59 620 302 60 32 chr11 48253033 48253224 -100530248 - MIR SINE MIR 0 262 61 1248 178 26 105 chr11 48253224 48253566 -100529906 + AluYb8 SINE Alu 1 315 -3 620 302 60 32 chr11 48253566 48253622 -100529850 - MIR SINE MIR -201 61 8 263 203 176 0 chr11 48253682 48253756 -100529716 - MIR SINE MIR -75 187 101 380 234 83 35 chr11 48254337 48254482 -100528990 - MER103 DNA DNA -12 154 3 496 237 142 43 chr11 48256394 48256614 -100526858 + MIR SINE MIR 19 249 -13 210 118 0 0 chr11 48256697 48256731 -100526741 + (TC)n Simple_repeat Simple_repeat 1 34 0 335 298 8 0 chr11 48257610 48257734 -100525738 + GA-rich Low_complexity Low_complexity 2 126 0 252 277 0 12 chr11 48257763 48257846 -100525626 + CT-rich Low_complexity Low_complexity 1 82 0 205 191 24 0 chr11 48258176 48258218 -100525254 + CT-rich Low_complexity Low_complexity 6 48 0 594 244 149 25 chr11 48259573 48259774 -100523698 + MIR SINE MIR 31 256 -6 288 180 63 171 chr11 48259843 48259881 -100523591 + MER5B DNA MER1_type 3 43 -135 2401 110 28 6 chr11 48259881 48260237 -100523235 - THE1B LTR MaLR 0 364 1 288 180 63 171 chr11 48260237 48260309 -100523163 + MER5B DNA MER1_type 43 101 -77 193 377 132 0 chr11 48260898 48261004 -100522468 - L2 LINE L2 0 3272 3153 4391 243 147 27 chr11 48261046 48261881 -100521591 + L2 LINE L2 1236 1969 -1344 2187 113 0 3 chr11 48261881 48262172 -100521300 - AluSg SINE Alu -20 290 1 4391 243 147 27 chr11 48262172 48262356 -100521116 + L2 LINE L2 1969 2130 -1183 2246 138 19 21 chr11 48262356 48262732 -100520740 + THE1C LTR MaLR 1 375 0 4391 243 147 27 chr11 48262732 48263480 -100519992 + L2 LINE L2 2130 3204 -109 568 226 116 73 chr11 48263504 48263686 -100519786 + MLT1C LTR MaLR 1 203 -264 2890 25 0 0 chr11 48263686 48264004 -100519468 + AluYb8 SINE Alu 1 318 0 568 226 116 73 chr11 48264004 48264122 -100519350 + MLT1C LTR MaLR 203 314 -153 267 286 77 11 chr11 48264169 48264260 -100519212 + L2 LINE L2 3217 3313 0 240 278 56 0 chr11 48264353 48264425 -100519047 + MIR SINE MIR 116 191 -71 190 344 0 16 chr11 48264439 48264500 -100518972 + MIR SINE MIR 93 152 -56 233 243 131 9 chr11 48264541 48264648 -100518824 + L1ME4a LINE L1 5813 5932 -189 1230 302 56 21 chr11 48264854 48265132 -100518340 - L1M4 LINE L1 -1652 4494 4227 2289 109 54 14 chr11 48265132 48265482 -100517990 + THE1B LTR MaLR 1 364 0 1230 302 56 21 chr11 48265482 48265914 -100517558 - L1M4 LINE L1 -1919 4227 3759 378 279 197 10 chr11 48266614 48266822 -100516650 + MIR SINE MIR 3 249 -13 361 339 8 0 chr11 48267193 48267320 -100516152 + (TCCA)n Simple_repeat Simple_repeat 4 131 0 879 275 40 16 chr11 48267349 48267596 -100515876 - MIR SINE MIR -1 261 9 218 318 0 0 chr11 48268090 48268153 -100515319 - L2 LINE L2 -283 2989 2927 347 235 82 60 chr11 48269052 48269235 -100514237 - MER106A DNA MER1_type -49 187 1 552 281 145 31 chr11 48269320 48269548 -100513924 + MIR SINE MIR 8 261 -1 359 257 19 19 chr11 48270784 48270889 -100512583 + MIR SINE MIR 49 153 -109 537 284 23 34 chr11 48271666 48271847 -100511625 - MIR SINE MIR -34 228 48 830 201 46 6 chr11 48272637 48272811 -100510661 + MIR SINE MIR 10 190 -72 1605 109 9 4 chr11 48273066 48273295 -100510177 + MER30 DNA MER1_type 1 230 0 336 332 72 31 chr11 48273505 48273728 -100509744 - MIR SINE MIR -30 232 1 255 243 29 29 chr11 48274148 48274218 -100509254 - MER5B DNA MER1_type 0 178 109 1778 185 10 7 chr11 48274251 48274548 -100508924 - AluJb SINE Alu -10 302 5 21 0 0 0 chr11 48274926 48274947 -100508525 + AT_rich Low_complexity Low_complexity 1 21 0 189 264 0 19 chr11 48275404 48275457 -100508015 - MIR3 SINE MIR -27 181 130 517 275 202 9 chr11 48275599 48275817 -100507655 + MIR SINE MIR 3 262 0 1818 112 67 4 chr11 48275954 48276257 -100507215 - AluSx SINE Alu 0 320 1 327 154 0 0 chr11 48276329 48276381 -100507091 - MIR SINE MIR -76 132 81 219 286 0 0 chr11 48277154 48277210 -100506262 + G-rich Low_complexity Low_complexity 1 56 0 2116 108 0 28 chr11 48277245 48277569 -100505903 + L1PA13 LINE L1 5849 6163 0 384 278 139 4 chr11 48277949 48278070 -100505402 - MIR3 SINE MIR -53 155 25 544 270 133 22 chr11 48278133 48278359 -100505113 - MIR SINE MIR -4 258 8 352 282 83 43 chr11 48278578 48278799 -100504673 - L2 LINE L2 -3 3269 442 * 721 188 11 68 chr11 48278791 48278967 -100504505 + MIR SINE MIR 15 180 -82 1274 196 129 51 chr11 48278970 48279403 -100504069 - Charlie4a DNA MER1_type -15 493 27 377 326 132 0 chr11 48279682 48279826 -100503646 + MIR SINE MIR 8 170 -92 1794 136 0 8 chr11 48279969 48280233 -100503239 + AluJb SINE Alu 35 296 -16 783 306 34 0 chr11 48280243 48280478 -100502994 + MIR SINE MIR 1 243 -19 401 332 29 14 chr11 48280719 48280879 -100502593 - MIR SINE MIR -55 153 33 188 270 156 114 chr11 48281231 48281520 -100501952 - L2 LINE L2 0 3272 2972 581 257 65 37 chr11 48281546 48281760 -100501712 - MIR SINE MIR -6 256 37 1139 204 74 110 chr11 48281953 48282518 -100500954 + MLT1H LTR MaLR 1 545 -4 1819 171 125 0 chr11 48282997 48283349 -100500123 - MSTD LTR MaLR 0 396 1 381 283 202 12 chr11 48283403 48283576 -100499896 - MIR SINE MIR -56 206 1 219 287 139 30 chr11 48284395 48284496 -100498976 + MER5A DNA MER1_type 48 159 -30 476 250 0 0 chr11 48284548 48284648 -100498824 + MER81 DNA DNA 15 114 0 2458 101 0 0 chr11 48284876 48285184 -100498288 - AluSx SINE Alu -4 308 1 200 293 85 0 chr11 48285386 48285468 -100498004 - MIR SINE MIR -62 200 112 1065 205 82 16 chr11 48285680 48285983 -100497489 - MER33 DNA MER1_type 0 324 2 251 303 33 30 chr11 48285998 48286269 -100497203 - L1M4 LINE L1 -3558 2588 2317 302 267 114 76 chr11 48286566 48286671 -100496801 + MER5A DNA MER1_type 57 165 -24 300 286 0 0 chr11 48287241 48287311 -100496161 + CT-rich Low_complexity Low_complexity 4 73 0 366 254 0 0 chr11 48287732 48287803 -100495669 + MER58B DNA MER1_type 172 242 -99 562 167 0 0 chr11 48287946 48288036 -100495436 + MER58B DNA MER1_type 252 341 0 235 200 238 19 chr11 48288036 48288139 -100495333 - MLT1L LTR MaLR -460 155 30 437 294 37 22 chr11 48288376 48288512 -100494960 + MIR SINE MIR 18 155 -107 307 273 3 0 chr11 48288797 48288879 -100494593 + MIR SINE MIR 68 139 -69 1379 220 7 99 chr11 48288886 48288976 -100494496 + MLT2D LTR ERVL 16 113 -301 2108 128 3 28 chr11 48288976 48289296 -100494176 - AluJb SINE Alu 0 312 1 1379 220 7 99 chr11 48289296 48289641 -100493831 + MLT2D LTR ERVL 113 411 -3 1764 209 76 14 chr11 48289928 48290363 -100493109 - MLT1C LTR MaLR 0 467 6 1724 185 13 10 chr11 48290651 48290959 -100492513 + AluJo SINE Alu 1 309 -3 553 282 110 23 chr11 48291327 48291715 -100491757 + LTR16A1 LTR ERVL 73 457 0 1913 40 0 76 chr11 48291925 48292176 -100491296 + AluY SINE Alu 65 296 -15 234 205 0 0 chr11 48292703 48292742 -100490730 - MER91A DNA MER1_type -19 171 133 * 459 284 71 30 chr11 48292732 48292901 -100490571 - MER91A DNA MER1_type -20 176 1 675 246 164 15 chr11 48292919 48293114 -100490358 - MIR SINE MIR 0 262 39 523 299 32 21 chr11 48293240 48293427 -100490045 + MIR3 SINE MIR 3 191 -17 579 277 153 0 chr11 48293804 48294006 -100489466 - MIR SINE MIR -25 237 5 933 328 39 7 chr11 48295307 48295719 -100487753 + LTR16A LTR ERVL 11 435 -15 225 0 0 0 chr11 48295953 48295978 -100487494 + (TG)n Simple_repeat Simple_repeat 1 25 0 1047 269 80 69 chr11 48296486 48297052 -100486420 - L3 LINE CR1 -508 1069 498 337 248 54 47 chr11 48297326 48297370 -100486102 + MER94 DNA DNA 3 45 -89 2755 184 86 8 chr11 48297370 48297896 -100485576 - MLT1F1 LTR MaLR 0 567 1 337 248 54 47 chr11 48297896 48297980 -100485492 + MER94 DNA DNA 45 132 -2 607 212 57 65 chr11 48297983 48298228 -100485244 + MER112 DNA MER1_type 9 251 -9 384 261 22 0 chr11 48298462 48298554 -100484918 - MER117 DNA MER1_type -47 150 57 458 262 36 48 chr11 48298574 48298742 -100484730 - MIR3 SINE MIR -33 175 10 2099 131 0 30 chr11 48298756 48299061 -100484411 - AluSx SINE Alu -16 296 1 1017 251 59 34 chr11 48299772 48300126 -100483346 - L2 LINE L2 -72 3241 2879 403 261 55 27 chr11 48300153 48300332 -100483140 - MIR3 SINE MIR -58 150 13 275 307 153 7 chr11 48300927 48301064 -100482408 + MIR SINE MIR 13 169 -93 772 225 151 17 chr11 48301400 48301764 -100481708 + LTR16A1 LTR ERVL 5 455 -2 186 309 88 44 chr11 48301897 48302217 -100481255 + L2 LINE L2 2148 2481 -833 637 291 34 17 chr11 48302302 48302481 -100480991 - MIR SINE MIR -11 251 70 464 220 10 0 chr11 48302486 48302584 -100480888 - LTR16C LTR ERVL 0 491 393 1297 106 32 0 chr11 48302584 48302772 -100480700 + MSTA LTR MaLR 1 194 -234 593 275 88 5 chr11 48302906 48303099 -100480373 - LTR16C LTR ERVL -249 242 34 235 292 31 0 chr11 48303100 48303165 -100480307 - MIR SINE MIR -188 74 8 2473 179 36 32 chr11 48304270 48304800 -100478672 - MER74A LTR ERVL 0 558 27 635 315 26 66 chr11 48304934 48305283 -100478189 - L2 LINE L2 -25 3288 2954 190 233 333 0 chr11 48306252 48306342 -100477130 - MIR SINE MIR -141 121 2 337 289 183 15 chr11 48306412 48306609 -100476863 + MIR SINE MIR 13 242 -20 499 370 61 14 chr11 48306854 48306900 -100476572 - L2 LINE L2 -343 2971 2929 2794 105 49 2 chr11 48306900 48307309 -100476163 + MSTA LTR MaLR 1 428 0 499 370 61 14 chr11 48307309 48307624 -100475848 - L2 LINE L2 -385 2929 2593 552 208 11 109 chr11 48307698 48307846 -100475626 - MIR SINE MIR -63 145 27 2360 109 0 0 chr11 48308823 48309127 -100474345 + AluSg SINE Alu 1 304 -6 383 223 96 0 chr11 48309201 48309295 -100474177 - MIR3 SINE MIR -7 201 99 229 266 71 26 chr11 48309921 48310034 -100473438 + MLT1I LTR MaLR 20 137 -272 345 140 35 187 chr11 48310170 48310341 -100473131 + MLT1H LTR MaLR 405 549 0 269 338 93 14 chr11 48310513 48310652 -100472820 - MIR SINE MIR -80 182 33 405 294 96 23 chr11 48310996 48311214 -100472258 + MIR SINE MIR 13 246 -16 445 250 48 16 chr11 48311855 48311979 -100471493 - L2 LINE L2 -6 3307 3180 387 278 28 49 chr11 48312072 48312107 -100471365 + MIR3 SINE MIR 36 70 -138 2577 154 34 7 chr11 48312107 48312543 -100470929 + MER83 LTR ERV1 1 448 0 387 278 28 49 chr11 48312543 48312651 -100470821 + MIR3 SINE MIR 70 176 -32 761 177 114 40 chr11 48313160 48313335 -100470137 + MIR SINE MIR 8 195 -67 513 288 9 76 chr11 48313508 48313765 -100469707 - MIR SINE MIR -13 249 12 420 292 133 26 chr11 48313713 48313908 -100469564 + MIR SINE MIR 35 250 -12 * 377 265 41 71 chr11 48314060 48314295 -100469177 + MIR SINE MIR 5 229 -33 * 581 291 103 9 chr11 48314256 48314469 -100469003 - MIR SINE MIR -5 257 25 311 298 35 9 chr11 48314978 48315092 -100468380 - MIR3 SINE MIR -10 198 82 478 270 68 18 chr11 48315158 48315321 -100468151 - MIR SINE MIR -72 190 20 2356 116 3 0 chr11 48315451 48315762 -100467710 - AluSx SINE Alu 0 312 1 367 251 190 37 chr11 48316043 48316206 -100467266 + MIR SINE MIR 51 238 -24 735 238 18 0 chr11 48316520 48316684 -100466788 - MIR SINE MIR -81 181 15 250 302 52 10 chr11 48318028 48318124 -100465348 + MIR SINE MIR 48 147 -115 3790 156 35 35 chr11 48318125 48318348 -100465124 + L1MA10 LINE L1 5559 5781 -553 2513 90 3 0 chr11 48318348 48318659 -100464813 + AluSq SINE Alu 1 312 -1 3790 156 35 35 chr11 48318659 48319210 -100464262 + L1MA10 LINE L1 5780 6333 -1 249 289 47 13 chr11 48320151 48320300 -100463172 + (CAGAGA)n Simple_repeat Simple_repeat 3 156 0 259 248 148 20 chr11 48320851 48320952 -100462520 + MIR3 SINE MIR 81 194 -14 375 242 155 48 chr11 48321378 48321584 -100461888 + MIR SINE MIR 33 256 -6 1884 199 19 53 chr11 48322695 48323128 -100460344 + MER47B DNA MER2_type 1 418 0 377 273 36 73 chr11 48323666 48323831 -100459641 - MIR3 SINE MIR -54 154 30 731 261 77 8 chr11 48324061 48324295 -100459177 - MLT1J2 LTR MaLR 0 450 201 425 256 195 10 chr11 48324954 48325149 -100458323 + MIR SINE MIR 20 250 -12 619 218 201 0 chr11 48325735 48325914 -100457558 - MIR SINE MIR 0 262 48 1207 268 40 3 chr11 48326518 48326847 -100456625 - MLT1K LTR MaLR 0 588 248 396 268 74 24 chr11 48326898 48327056 -100456416 + MIR3 SINE MIR 26 194 -14 584 134 47 0 chr11 48328112 48328239 -100455233 + CT-rich Low_complexity Low_complexity 4 136 0 734 309 170 21 chr11 48328277 48328666 -100454806 - L2 LINE L2 -14 3258 2812 262 269 138 48 chr11 48328832 48328999 -100454473 - L2 LINE L2 -180 3092 2911 365 287 81 40 chr11 48329328 48329502 -100453970 + MIR SINE MIR 42 222 -40 212 292 142 64 chr11 48329591 48329872 -100453600 - L2 LINE L2 -159 3113 2811 497 244 16 20 chr11 48330121 48330270 -100453202 + MIR3 SINE MIR 15 160 -48 265 307 92 64 chr11 48330298 48330624 -100452848 - MER102b DNA MER1_type -2 339 5 340 234 72 40 chr11 48331053 48331181 -100452291 + MIR SINE MIR 44 174 -58 538 283 88 6 chr11 48331185 48331344 -100452128 - MIR SINE MIR -83 179 8 192 253 232 20 chr11 48331392 48331491 -100451981 + MIR3 SINE MIR 68 187 -21 513 293 55 77 chr11 48331496 48331875 -100451597 - L2 LINE L2 -6 3307 2937 2167 137 0 0 chr11 48332511 48332810 -100450662 + AluSx SINE Alu 1 299 -13 2158 189 90 48 chr11 48333233 48333731 -100449741 - MLT2B1 LTR ERVL 0 520 2 240 184 0 0 chr11 48333734 48333783 -100449689 + GA-rich Low_complexity Low_complexity 1 49 0 335 215 140 37 chr11 48333836 48333943 -100449529 - MIR SINE MIR -71 191 74 411 292 9 9 chr11 48334225 48334338 -100449134 + MIR3 SINE MIR 62 174 -34 372 274 97 91 chr11 48334815 48334933 -100448539 + MIR3 SINE MIR 18 139 -69 2508 65 3 0 chr11 48334933 48335227 -100448245 + AluY SINE Alu 1 295 -16 372 274 97 91 chr11 48335227 48335283 -100448189 + MIR3 SINE MIR 139 193 -15 * 709 265 23 111 chr11 48335267 48335610 -100447862 + L2 LINE L2 2910 3222 -50 2760 200 64 24 chr11 48336548 48336567 -100446905 - MER82 DNA MER2_type -1 652 635 1581 140 0 0 chr11 48336567 48336802 -100446670 - MER46A DNA MER2_type -1 235 1 2760 200 64 24 chr11 48336802 48337408 -100446064 - MER82 DNA MER2_type -18 635 2 196 279 228 13 chr11 48337480 48337559 -100445913 + L2 LINE L2 3169 3264 -8 1363 234 82 31 chr11 48337588 48338117 -100445355 - L2 LINE L2 0 3313 2762 236 287 99 0 chr11 48338119 48338220 -100445252 + L1M4 LINE L1 3802 3912 -2234 * 1587 270 21 4 chr11 48338216 48338766 -100444706 - L1M4 LINE L1 -2325 3821 3195 657 316 57 48 chr11 48338769 48339251 -100444221 - L2 LINE L2 -45 3268 2762 320 207 117 18 chr11 48339262 48339373 -100444099 - MLT1I LTR MaLR 0 409 288 306 197 31 87 chr11 48339544 48339671 -100443801 - MLT1I LTR MaLR -389 160 41 375 356 122 5 chr11 48339683 48339905 -100443567 - L2 LINE L2 -585 2729 2482 1491 279 73 2 chr11 48339908 48340346 -100443126 + L2 LINE L2 2845 3313 0 298 254 28 151 chr11 48341414 48341593 -100441879 + MER91A DNA MER1_type 27 177 -13 261 270 68 27 chr11 48341747 48341821 -100441651 + MIR3 SINE MIR 105 181 -27 2664 220 39 13 chr11 48341851 48342524 -100440948 - L1ME1 LINE L1 -4 6231 5542 2013 146 38 0 chr11 48342535 48342878 -100440594 - L1MD1 LINE L1 0 6242 5887 4808 248 71 10 chr11 48342891 48344477 -100438995 - L1ME1 LINE L1 -2354 3861 2179 2034 260 104 56 chr11 48344479 48345326 -100438146 - L1ME1 LINE L1 -5159 1237 432 384 40 0 0 chr11 48345326 48345376 -100438096 + (TC)n Simple_repeat Simple_repeat 1 50 0 210 37 0 0 chr11 48345375 48345402 -100438070 + (CA)n Simple_repeat Simple_repeat 1 27 0 * 2034 260 104 56 chr11 48345376 48345700 -100437772 - L1ME1 LINE L1 -5964 432 37 1276 149 95 0 chr11 48345717 48345958 -100437514 + MER21A LTR ERV1 1 264 -667 3088 156 53 8 chr11 48345963 48346495 -100436977 + MER21A LTR ERV1 376 931 0 217 268 73 24 chr11 48347295 48347377 -100436095 - L2 LINE L2 -17 3255 3170 382 277 121 68 chr11 48347429 48347635 -100435837 - MIR SINE MIR -10 252 36 341 291 43 8 chr11 48348373 48348490 -100434982 - MIR3 SINE MIR -43 165 45 268 317 49 58 chr11 48348723 48348947 -100434525 + MIR SINE MIR 28 249 -13 365 171 11 102 chr11 48349138 48349226 -100434246 + MIR SINE MIR 89 168 -94 4145 184 62 10 chr11 48349318 48350516 -100432956 - L1MB8 LINE L1 -1 6177 4914 2023 150 3 3 chr11 48350516 48350816 -100432656 - AluSx SINE Alu -12 300 1 688 209 111 22 chr11 48350819 48351044 -100432428 - L1ME2 LINE L1 -45 6119 5875 514 206 82 48 chr11 48351055 48351069 -100432403 - MIR SINE MIR -71 191 179 2132 154 85 23 chr11 48351069 48351113 -100432359 - MLT2D LTR ERVL 0 414 374 423 0 0 0 chr11 48351113 48351160 -100432312 + (TG)n Simple_repeat Simple_repeat 1 47 0 2132 154 85 23 chr11 48351160 48351505 -100431967 - MLT2D LTR ERVL -40 374 1 514 206 82 48 chr11 48351505 48351636 -100431836 - MIR SINE MIR -83 179 41 270 0 0 0 chr11 48352864 48352894 -100430578 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 423 272 20 68 chr11 48352895 48353042 -100430430 - L2 LINE L2 -12 3301 3162 858 201 6 6 chr11 48353051 48353215 -100430257 - FRAM SINE Alu -2 164 1 2794 230 28 26 chr11 48353215 48353990 -100429482 + L1ME1 LINE L1 5307 6083 -83 277 87 0 0 chr11 48353996 48354042 -100429430 + MADE1 DNA Mariner 1 46 -34 646 204 242 0 chr11 48354767 48354924 -100428548 + MIR SINE MIR 30 224 -38 196 324 69 10 chr11 48355502 48355604 -100427868 - MIR SINE MIR -59 203 96 209 288 6 94 chr11 48355628 48355788 -100427684 - MIR SINE MIR 0 262 117 605 301 128 26 chr11 48355848 48356160 -100427312 - L2 LINE L2 -8 3264 2921 339 186 0 0 chr11 48356274 48356307 -100427165 + (TG)n Simple_repeat Simple_repeat 1 33 -37 276 30 0 0 chr11 48356307 48356340 -100427132 + (GA)n Simple_repeat Simple_repeat 1 33 0 339 186 0 0 chr11 48356340 48356376 -100427096 + (TG)n Simple_repeat Simple_repeat 32 70 0 624 325 58 17 chr11 48356417 48356657 -100426815 + MIR SINE MIR 12 261 -1 335 201 287 46 chr11 48356908 48357082 -100426390 + L3 LINE CR1 1232 1447 -130 409 329 56 12 chr11 48357589 48357750 -100425722 - L2 LINE L2 0 3272 3105 271 270 38 29 chr11 48358468 48358581 -100424891 - MIR3 SINE MIR -22 186 74 530 274 85 7 chr11 48358733 48358886 -100424586 - MIR SINE MIR -70 192 28 804 286 35 27 chr11 48358907 48359166 -100424306 + MIR SINE MIR 2 262 0 1113 212 155 42 chr11 48359167 48359736 -100423736 + L2 LINE L2 2661 3313 0 2117 113 3 3 chr11 48362037 48362357 -100421115 - AluSx SINE Alu 0 320 1 1364 213 86 21 chr11 48362373 48362806 -100420666 - L1MB7 LINE L1 -12 6172 5712 1859 146 148 0 chr11 48362807 48363178 -100420294 + MSTA LTR MaLR 3 428 0 564 227 8 15 chr11 48363178 48363310 -100420162 - L1MB7 LINE L1 -452 5714 5584 309 226 0 0 chr11 48363321 48363383 -100420089 - MIR SINE MIR -108 154 93 538 288 100 66 chr11 48363789 48364109 -100419363 - L2 LINE L2 -9 3263 2933 632 294 27 5 chr11 48364291 48364478 -100418994 - MER102b DNA MER1_type -44 297 107 312 292 133 0 chr11 48365689 48365809 -100417663 + MIR SINE MIR 48 183 -79 215 271 0 68 chr11 48365859 48365918 -100417554 + L2 LINE L2 3239 3293 -20 443 308 55 22 chr11 48365931 48366113 -100417359 + MIR SINE MIR 75 262 0 374 225 50 135 chr11 48366120 48366320 -100417152 + MIR SINE MIR 78 260 -2 2451 204 90 46 chr11 48366347 48367233 -100416239 + L1MC5 LINE L1 7022 7946 -15 2428 101 5 65 chr11 48367452 48367839 -100415633 - THE1B LTR MaLR 0 364 1 192 321 196 9 chr11 48367917 48368029 -100415443 - L2 LINE L2 -274 2998 2866 398 221 87 0 chr11 48368355 48368482 -100414990 - MER103 DNA DNA -3 163 26 1738 176 66 24 chr11 48368839 48368943 -100414529 + MSTD LTR MaLR 1 99 -297 2718 127 34 5 chr11 48368943 48369359 -100414113 - MSTA LTR MaLR 0 428 1 1738 176 66 24 chr11 48369359 48369634 -100413838 + MSTD LTR MaLR 99 396 0 266 303 13 0 chr11 48369988 48370064 -100413408 - L2 LINE L2 -4 3309 3233 623 233 155 21 chr11 48370200 48370393 -100413079 + L2 LINE L2 3094 3312 -1 2223 127 122 13 chr11 48370594 48370980 -100412492 - MSTA LTR MaLR 0 428 1 1448 274 47 25 chr11 48371132 48371734 -100411738 + L2 LINE L2 2683 3312 -1 189 280 30 70 chr11 48371932 48372032 -100411440 - L3 LINE CR1 -56 1521 1426 483 288 15 60 chr11 48372205 48372241 -100411231 - L1ME4a LINE L1 -226 5895 5859 2425 98 19 58 chr11 48372241 48372617 -100410855 + THE1B LTR MaLR 4 364 0 483 288 15 60 chr11 48372617 48372847 -100410625 - L1ME4a LINE L1 -262 5859 5641 360 243 84 19 chr11 48373135 48373242 -100410230 + MIR3 SINE MIR 81 194 -14 641 249 54 50 chr11 48373290 48373511 -100409961 + MIR SINE MIR 28 249 -13 366 235 84 25 chr11 48373579 48373698 -100409774 - MIR SINE MIR -62 146 21 443 295 29 40 chr11 48374663 48374836 -100408636 + L2 LINE L2 3138 3308 -5 1562 155 44 19 chr11 48375394 48375665 -100407807 + AluJo SINE Alu 3 280 -32 483 178 9 56 chr11 48376038 48376145 -100407327 - MIR SINE MIR -52 210 109 526 248 131 86 chr11 48376209 48376273 -100407199 + MLT1H LTR MaLR 111 171 -378 1960 169 0 0 chr11 48376273 48376569 -100406903 + AluJb SINE Alu 3 298 -14 526 248 131 86 chr11 48376569 48376924 -100406548 + MLT1H LTR MaLR 171 549 0 334 214 117 39 chr11 48376924 48377027 -100406445 - MIR SINE MIR -151 111 1 271 302 38 38 chr11 48377092 48377198 -100406274 - MIR SINE MIR -86 122 17 374 310 84 7 chr11 48377924 48378079 -100405393 + MIR SINE MIR 34 200 -62 601 245 74 12 chr11 48378219 48378382 -100405090 - MIR3 SINE MIR -21 187 15 277 239 62 0 chr11 48379298 48379381 -100404091 + MIR SINE MIR 104 192 -70 240 247 153 0 chr11 48379502 48379587 -100403885 + MIR SINE MIR 103 200 -62 369 244 0 23 chr11 48379721 48379807 -100403665 - MIR3 SINE MIR -21 187 104 2466 56 0 19 chr11 48379978 48380302 -100403170 + L1PA2 LINE L1 5838 6155 0 25 0 0 0 chr11 48380302 48380327 -100403145 + AT_rich Low_complexity Low_complexity 1 25 0 219 301 56 63 chr11 48380901 48381044 -100402428 + L2 LINE L2 2909 3050 -222 410 237 43 0 chr11 48381209 48381302 -100402170 - MIR SINE MIR -73 135 39 490 314 26 3 chr11 48381781 48381970 -100401502 + MIR SINE MIR 69 262 0 1115 198 114 60 chr11 48382850 48383280 -100400192 - MLT1C LTR MaLR -14 453 1 352 329 73 22 chr11 48383482 48383619 -100399853 + MIR SINE MIR 8 151 -111 223 274 88 62 chr11 48383802 48383915 -100399557 - MIR SINE MIR -68 194 79 265 277 95 66 chr11 48384131 48384268 -100399204 - MIR SINE MIR -63 145 13 260 225 150 62 chr11 48384328 48384408 -100399064 - MIR SINE MIR -13 195 108 189 340 0 0 chr11 48384527 48384580 -100398892 - L2 LINE L2 -81 3191 3139 262 361 10 0 chr11 48385195 48385292 -100398180 + L3 LINE CR1 1407 1504 -73 213 191 48 0 chr11 48385809 48385851 -100397621 + L2 LINE L2 3199 3242 -71 657 276 121 0 chr11 48386034 48386233 -100397239 + MIR SINE MIR 31 253 -9 986 253 57 27 chr11 48386236 48386533 -100396939 + MLT1I LTR MaLR 2 307 -102 893 260 140 43 chr11 48386542 48387035 -100396437 + MLT1H LTR MaLR 7 547 -2 374 220 20 30 chr11 48387036 48387136 -100396336 + MLT1I LTR MaLR 309 407 -2 234 387 0 13 chr11 48387512 48387587 -100395885 + MIR SINE MIR 4 77 -185 1657 142 112 0 chr11 48387599 48387859 -100395613 + AluJb SINE Alu 1 289 -23 427 295 116 6 chr11 48387875 48388048 -100395424 + MIR SINE MIR 59 250 -12 611 274 94 19 chr11 48388062 48388274 -100395198 + MIR SINE MIR 32 259 -3 203 200 25 0 chr11 48388924 48388964 -100394508 + GA-rich Low_complexity Low_complexity 2 42 0 2340 121 0 0 chr11 48389098 48389403 -100394069 + AluSx SINE Alu 2 306 -6 315 263 53 0 chr11 48390018 48390094 -100393378 + MIR SINE MIR 51 130 -132 263 221 52 39 chr11 48390318 48390395 -100393077 + MIR SINE MIR 69 146 -62 205 293 0 35 chr11 48390518 48390576 -100392896 + MIR SINE MIR 37 92 -116 196 299 168 19 chr11 48390879 48390986 -100392486 - MIR SINE MIR -32 230 108 206 209 119 0 chr11 48391037 48391104 -100392368 + MIR SINE MIR 44 118 -90 24 0 0 0 chr11 48391340 48391364 -100392108 + AT_rich Low_complexity Low_complexity 1 24 0 195 244 100 11 chr11 48391640 48391730 -100391742 - MIR3 SINE MIR 0 208 111 481 256 211 13 chr11 48391876 48392032 -100391440 - MIR SINE MIR -6 256 70 1740 163 23 8 chr11 48392887 48393227 -100390245 + MLT1B LTR MaLR 3 379 -11 1350 145 177 0 chr11 48393356 48393604 -100389868 + AluJo SINE Alu 3 294 -18 1061 115 38 0 chr11 48394325 48394482 -100388990 + AluSp SINE Alu 140 302 -11 515 291 124 4 chr11 48394585 48394807 -100388665 + MIR SINE MIR 17 262 0 1703 167 10 56 chr11 48394882 48394968 -100388504 + AluJb SINE Alu 1 89 -223 2275 132 0 0 chr11 48394968 48395278 -100388194 + AluSx SINE Alu 1 310 -2 1703 167 10 56 chr11 48395278 48395497 -100387975 + AluJb SINE Alu 89 292 -20 853 217 100 25 chr11 48396457 48396697 -100386775 - L2 LINE L2 -677 2637 2380 181 250 106 58 chr11 48396636 48396740 -100386732 - MIR SINE MIR -84 124 16 * 222 156 22 0 chr11 48396967 48397012 -100386460 + (TAA)n Simple_repeat Simple_repeat 2 47 0 778 247 103 31 chr11 48397034 48397257 -100386215 - MIR SINE MIR -23 239 1 375 232 36 54 chr11 48397275 48397387 -100386085 - MIR SINE MIR -77 185 76 693 185 68 0 chr11 48397398 48397560 -100385912 - MER53 DNA DNA -7 182 10 701 284 35 9 chr11 48398192 48398421 -100385051 - MIR SINE MIR -7 255 21 321 263 146 0 chr11 48398737 48398874 -100384598 + MIR3 SINE MIR 41 197 -11 202 285 58 109 chr11 48399597 48399734 -100383738 + L2 LINE L2 3134 3263 -9 362 274 142 0 chr11 48400056 48400162 -100383310 - L2 LINE L2 -6 3307 3187 439 259 18 36 chr11 48401232 48401344 -100382128 + L2 LINE L2 3163 3272 0 320 271 39 8 chr11 48401345 48401474 -100381998 + L1ME4a LINE L1 5982 6114 -7 708 284 42 0 chr11 48401734 48401924 -100381548 + MIR SINE MIR 54 251 -11 419 360 50 9 chr11 48401947 48402169 -100381303 - MIR SINE MIR -14 248 18 530 310 148 33 chr11 48402477 48402809 -100380663 - L2 LINE L2 0 3313 2944 191 364 10 0 chr11 48402888 48402987 -100380485 - MIR SINE MIR -74 188 89 505 257 143 0 chr11 48403137 48403312 -100380160 + MIR SINE MIR 29 228 -34 1273 275 126 22 chr11 48403593 48404102 -100379370 + MLT1L LTR MaLR 48 609 -6 2175 114 73 15 chr11 48404309 48404652 -100378820 - THE1B LTR MaLR 0 364 2 947 182 4 1 chr11 48404794 48406241 -100377231 - ALR/Alpha Satellite centromeric 0 1450 1 937 177 5 1 chr11 48406349 48407864 -100375608 - ALR/Alpha Satellite centromeric 0 1520 1 212 241 0 74 chr11 48408193 48408247 -100375225 + L2 LINE L2 3264 3313 0 210 196 20 0 chr11 48408247 48408298 -100375174 + (TGAA)n Simple_repeat Simple_repeat 2 53 0 585 172 26 17 chr11 48408332 48408448 -100375024 - MLT1F LTR MaLR -29 513 397 602 238 119 6 chr11 48409159 48409319 -100374153 + MER45A DNA AcHobo 1 178 0 450 136 0 0 chr11 48409688 48409769 -100373703 + (CA)n Simple_repeat Simple_repeat 2 82 0 575 211 92 0 chr11 48411140 48411292 -100372180 - MIR SINE MIR -58 204 39 736 116 20 62 chr11 48411305 48411451 -100372021 - FRAM SINE Alu -24 152 13 262 185 0 56 chr11 48411521 48411602 -100371870 + MIR SINE MIR 112 185 -77 370 301 82 0 chr11 48412186 48412332 -100371140 + MIR3 SINE MIR 19 176 -32 424 234 117 7 chr11 48412499 48412644 -100370828 + MIR3 SINE MIR 48 208 0 1216 253 137 21 chr11 48413392 48413554 -100369918 - L2 LINE L2 0 3313 3171 2026 220 97 19 chr11 48413554 48414131 -100369341 - MLT1E3 LTR MaLR 0 624 3 1216 253 137 21 chr11 48414131 48414751 -100368721 - L2 LINE L2 -142 3171 2464 196 295 64 0 chr11 48415050 48415128 -100368344 + L2 LINE L2 2657 2739 -575 236 303 97 21 chr11 48415348 48415493 -100367979 + MER103 DNA DNA 3 158 -8 1835 163 45 0 chr11 48415799 48416087 -100367385 + AluSx SINE Alu 1 301 -11 309 328 20 35 chr11 48416087 48416274 -100367198 - L2 LINE L2 -21 3292 3107 916 296 38 64 chr11 48416644 48417175 -100366297 - MLT1K LTR MaLR -70 518 2 485 306 112 13 chr11 48417177 48417409 -100366063 - L2 LINE L2 -685 2629 2375 317 340 117 20 chr11 48417441 48417688 -100365784 + L2 LINE L2 3001 3271 -1 382 302 16 8 chr11 48418890 48419016 -100364456 + L3 LINE CR1 900 1026 -551 259 289 160 35 chr11 48419549 48419861 -100363611 + L3 LINE CR1 1120 1470 -107 388 373 0 0 chr11 48420135 48420296 -100363176 + (TG)n Simple_repeat Simple_repeat 1 161 0 183 266 0 0 chr11 48420316 48420380 -100363092 + (CATG)n Simple_repeat Simple_repeat 3 66 0 603 279 135 0 chr11 48420398 48420613 -100362859 + MIR SINE MIR 19 262 0 311 240 0 0 chr11 48421237 48421312 -100362160 + MIR3 SINE MIR 106 180 -28 2258 124 3 0 chr11 48421493 48421799 -100361673 - AluSx SINE Alu -5 307 1 383 285 230 0 chr11 48422820 48422985 -100360487 - MIR SINE MIR -11 251 49 1507 177 16 25 chr11 48423061 48423378 -100360094 - MER33 DNA MER1_type -10 314 1 538 314 59 15 chr11 48423379 48423583 -100359889 - MIR SINE MIR -47 215 3 636 293 95 5 chr11 48423794 48424016 -100359456 - MIR SINE MIR 0 262 21 451 182 61 0 chr11 48424506 48424605 -100358867 - MIR3 SINE MIR -21 187 83 301 236 34 0 chr11 48424942 48425047 -100358425 - MIR SINE MIR -61 147 80 241 288 0 0 chr11 48425560 48425619 -100357853 + MIR SINE MIR 117 175 -87 289 333 130 33 chr11 48425649 48426072 -100357400 - L2 LINE L2 -25 3288 2825 242 311 67 97 chr11 48426609 48426876 -100356596 + L2 LINE L2 3011 3269 -3 419 282 40 8 chr11 48427721 48427845 -100355627 + MIR SINE MIR 76 203 -59 243 286 14 100 chr11 48427872 48428012 -100355460 - MLT1H LTR MaLR -17 532 405 402 292 26 31 chr11 48428042 48428260 -100355212 - MLT1H LTR MaLR -229 180 1 1706 139 119 39 chr11 48429348 48429499 -100353973 - THE1B LTR MaLR 0 364 227 324 0 0 0 chr11 48429499 48429535 -100353937 + (TG)n Simple_repeat Simple_repeat 2 37 0 2228 99 0 0 chr11 48429534 48429843 -100353629 - AluSx SINE Alu 0 309 1 1706 139 119 39 chr11 48429843 48430027 -100353445 - THE1B LTR MaLR -445 4294967215 1 454 344 12 0 chr11 48430592 48430755 -100352717 + MIR3 SINE MIR 38 202 -6 437 275 52 36 chr11 48430780 48430967 -100352505 + MIR3 SINE MIR 7 192 -58 2093 118 21 0 chr11 48431054 48431341 -100352131 + AluSx SINE Alu 1 293 -19 213 340 28 43 chr11 48431568 48431709 -100351763 - L2 LINE L2 -94 3219 3081 186 292 0 0 chr11 48431717 48431765 -100351707 + MIR SINE MIR 200 247 -15 1336 245 117 45 chr11 48432594 48433149 -100350323 + MLT1G1 LTR MaLR 1 595 0 383 287 148 0 chr11 48433276 48433452 -100350020 - MIR SINE MIR -7 255 55 607 297 16 0 chr11 48433468 48433650 -100349822 - MIR SINE MIR -1 261 77 734 181 141 65 chr11 48434386 48434706 -100348766 + LTR16A1 LTR ERVL 91 457 0 329 252 99 9 chr11 48434860 48434971 -100348501 - MIR SINE MIR -63 145 25 234 241 24 24 chr11 48435031 48435114 -100348358 + L2 LINE L2 3005 3087 -185 447 274 93 19 chr11 48435639 48436013 -100347459 + MER113 DNA MER1_type? 59 521 0 255 236 111 0 chr11 48436106 48436178 -100347294 + L2 LINE L2 3187 3266 -6 342 353 111 0 chr11 48436912 48437102 -100346370 - MIR SINE MIR -35 227 17 755 153 14 0 chr11 48437388 48437532 -100345940 + GA-rich Low_complexity Low_complexity 3 148 0 1112 56 22 22 chr11 48437534 48437712 -100345760 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 3170 242 46 24 chr11 48437731 48438706 -100344766 + L1MC4a LINE L1 6810 7806 -2 1401 228 75 71 chr11 48438720 48438841 -100344631 + MLT1D LTR MaLR 1 120 -385 2184 134 0 3 chr11 48438841 48439147 -100344325 + AluSq SINE Alu 1 305 -8 1401 228 75 71 chr11 48439147 48439520 -100343952 + MLT1D LTR MaLR 120 497 -8 235 273 15 0 chr11 48439568 48439634 -100343838 + MIR3 SINE MIR 142 208 0 343 300 8 25 chr11 48439985 48440105 -100343367 - MIR SINE MIR -143 119 2 276 269 0 0 chr11 48440772 48440839 -100342633 - Charlie8 DNA MER1_type -991 1426 1360 211 284 0 15 chr11 48441320 48441387 -100342085 - MIR3 SINE MIR -11 197 132 465 243 18 9 chr11 48441721 48441832 -100341640 - MIR SINE MIR -75 187 76 250 222 16 16 chr11 48442084 48442147 -100341325 + L2 LINE L2 3209 3271 -1 1910 94 4 12 chr11 48443319 48443574 -100339898 + AluSx SINE Alu 40 292 -20 2479 82 0 7 chr11 48443949 48444255 -100339217 + AluSx SINE Alu 2 305 -7 299 262 174 7 chr11 48446340 48446489 -100336983 + MIR SINE MIR 60 233 -29 620 217 171 6 chr11 48446521 48446696 -100336776 + MIR SINE MIR 58 261 -1 196 327 106 18 chr11 48447189 48447302 -100336170 + MIR3 SINE MIR 83 205 -3 278 328 48 0 chr11 48450026 48450151 -100333321 - MIR SINE MIR -48 214 84 276 266 43 11 chr11 48451010 48451104 -100332368 - L2 LINE L2 -4 3268 3172 * 644 272 58 27 chr11 48451095 48451319 -100332153 - MIR SINE MIR -10 252 22 197 198 143 0 chr11 48452184 48452275 -100331197 - MIR3 SINE MIR -23 185 82 357 86 0 0 chr11 48455305 48455363 -100328109 + (TG)n Simple_repeat Simple_repeat 2 59 0 184 224 0 61 chr11 48455441 48455490 -100327982 - L2 LINE L2 -17 3296 3251 * 384 202 129 40 chr11 48455462 48455586 -100327886 - MIR SINE MIR -29 233 99 515 248 36 0 chr11 48455587 48455724 -100327748 + L1ME3 LINE L1 6020 6161 -1 4893 161 24 23 chr11 48455851 48456761 -100326711 - MER49 LTR ERV1 -12 911 1 314 314 16 16 chr11 48457235 48457359 -100326113 - MIR SINE MIR -56 206 83 550 227 93 0 chr11 48458597 48458747 -100324725 + MER103 DNA DNA 2 165 -1 194 209 0 0 chr11 48458921 48458964 -100324508 + MIR SINE MIR 102 144 -64 249 286 170 14 chr11 48459260 48459407 -100324065 + MIR3 SINE MIR 18 187 -21 1745 164 27 16 chr11 48460464 48460835 -100322637 + L1MA6 LINE L1 5926 6300 0 295 294 37 11 chr11 48461045 48461152 -100322320 - MIR SINE MIR -77 131 19 239 208 28 28 chr11 48462027 48462099 -100321373 + MIR SINE MIR 65 136 -72 375 275 9 9 chr11 48462489 48462598 -100320874 + MER5A DNA MER1_type 7 115 -74 3368 90 14 18 chr11 48463307 48463805 -100319667 - LTR10D LTR ERV1 0 513 18 312 329 117 0 chr11 48464052 48464189 -100319283 + MIR SINE MIR 94 246 -16 1081 260 61 65 chr11 48464244 48464706 -100318766 + MLT1K LTR MaLR 125 584 -4 244 292 31 0 chr11 48465280 48465345 -100318127 + Charlie8 DNA MER1_type 2351 2417 0 21 36 0 0 chr11 48465765 48465793 -100317679 + AT_rich Low_complexity Low_complexity 1 28 0 1816 90 0 4 chr11 48466315 48466548 -100316924 + AluSc SINE Alu 67 298 -11 325 225 11 22 chr11 48466572 48466661 -100316811 + MER103 DNA DNA 38 125 -41 191 353 12 12 chr11 48466823 48466908 -100316564 - L2 LINE L2 0 3313 3229 1008 280 67 31 chr11 48466995 48467384 -100316088 + LTR16C LTR ERVL 89 491 0 218 313 83 21 chr11 48467388 48467532 -100315940 - L2 LINE L2 -97 3216 3064 438 114 130 15 chr11 48468191 48468322 -100315150 + AluSg SINE Alu 4 149 -161 346 200 40 60 chr11 48468455 48468555 -100314917 + L1MC4a LINE L1 5815 5912 -1896 1237 188 50 82 chr11 48468564 48468912 -100314560 - AluJb SINE Alu 0 312 1 533 279 40 11 chr11 48469690 48469867 -100313605 + MIR SINE MIR 9 192 -64 315 0 0 0 chr11 48470221 48470256 -100313216 + (TAA)n Simple_repeat Simple_repeat 2 36 0 183 268 54 0 chr11 48470852 48470908 -100312564 - MIR SINE MIR -96 166 108 2095 141 57 32 chr11 48471995 48472533 -100310939 + MLT2A2 LTR ERVL 1 554 0 208 325 97 18 chr11 48472797 48472911 -100310561 + MIR SINE MIR 140 262 0 2340 107 3 0 chr11 48472919 48473229 -100310243 - AluSx SINE Alu -1 311 1 304 331 47 24 chr11 48474460 48474587 -100308885 + L2 LINE L2 3122 3251 -21 38 0 0 0 chr11 48475252 48475290 -100308182 + AT_rich Low_complexity Low_complexity 1 38 0 449 314 34 42 chr11 48477061 48477297 -100306175 + MIR SINE MIR 14 247 -15 304 296 36 29 chr11 48478106 48478248 -100305224 - MIR SINE MIR -58 150 7 404 314 52 0 chr11 48479056 48479209 -100304263 - MIR SINE MIR -35 227 67 277 295 72 7 chr11 48479446 48479585 -100303887 + MIR SINE MIR 103 250 -12 407 336 47 70 chr11 48479951 48480421 -100303051 + L3 LINE CR1 333 791 -786 554 248 89 0 chr11 48481566 48481723 -100301749 - MIR SINE MIR -20 242 72 27 62 0 0 chr11 48481923 48481971 -100301501 + GC_rich Low_complexity Low_complexity 1 48 0 206 260 106 41 chr11 48482770 48482893 -100300579 + MIR3 SINE MIR 58 188 -20 525 300 121 9 chr11 48483084 48483307 -100300165 + MIR SINE MIR 3 250 -12 690 285 74 8 chr11 48484500 48484747 -100298725 - MIR SINE MIR -2 260 1 186 43 0 0 chr11 48485055 48485078 -100298394 + (TG)n Simple_repeat Simple_repeat 2 24 0 317 303 9 18 chr11 48485458 48485567 -100297905 + MIR SINE MIR 41 148 -60 311 219 24 24 chr11 48487301 48487383 -100296089 + MER90 LTR ERV1 501 582 -32 370 268 52 93 chr11 48487515 48487806 -100295666 + MER90-int LTR ERV1 2680 2958 -1689 528 352 27 44 chr11 48488667 48489187 -100294285 + MER90-int LTR ERV1 6133 6643 -158 367 147 73 0 chr11 48489356 48489424 -100294048 + MER90 LTR ERV1 1 73 -502 * 1730 196 35 14 chr11 48489414 48489781 -100293691 + MER90 LTR ERV1 233 607 -7 3740 124 7 0 chr11 48491279 48491866 -100291606 + LTR10C LTR ERV1 1 591 0 331 231 46 37 chr11 48492446 48492554 -100290918 + MIR3 SINE MIR 91 199 -9 312 27 0 0 chr11 48492932 48492969 -100290503 + (TC)n Simple_repeat Simple_repeat 2 38 0 1976 135 0 7 chr11 48493861 48494150 -100289322 + AluSg SINE Alu 3 289 -21 207 179 0 0 chr11 48494169 48494208 -100289264 + (CAGAGA)n Simple_repeat Simple_repeat 4 42 0 216 111 56 0 chr11 48494375 48494411 -100289061 + L2 LINE L2 3266 3303 -10 228 315 54 9 chr11 48494845 48494956 -100288516 - MLT1K LTR MaLR -377 211 96 318 176 95 14 chr11 48495181 48495255 -100288217 + MIR3 SINE MIR 81 160 -48 553 211 38 0 chr11 48495255 48495388 -100288084 + MER117 DNA MER1_type 1 138 -59 344 307 0 0 chr11 48495909 48495997 -100287475 - MIR3 SINE MIR -15 193 106 458 337 43 27 chr11 48495999 48496183 -100287289 - MIR SINE MIR -7 255 69 * 1262 244 135 14 chr11 48496182 48496696 -100286776 + L2 LINE L2 2730 3313 0 339 339 67 6 chr11 48497283 48497448 -100286024 - MIR SINE MIR -35 227 53 2426 253 106 26 chr11 48497449 48497914 -100285558 - L1MEc LINE L1 -3874 2522 2096 2211 123 0 0 chr11 48497914 48498206 -100285266 + AluSg1 SINE Alu 1 292 -17 2426 253 106 26 chr11 48498206 48498908 -100284564 - L1MEc LINE L1 -4300 2096 1261 741 267 68 5 chr11 48499255 48499476 -100283996 - MIR SINE MIR 0 262 28 277 157 14 14 chr11 48499630 48499700 -100283772 - L1ME4a LINE L1 -1 6120 6051 189 0 0 0 chr11 48499830 48499851 -100283621 + (T)n Simple_repeat Simple_repeat 1 21 0 198 103 0 0 chr11 48501142 48501171 -100282301 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 299 315 199 14 chr11 48501558 48501774 -100281698 - L2 LINE L2 -350 2964 2709 2272 104 7 3 chr11 48501777 48502084 -100281388 - AluSp SINE Alu -5 308 1 1102 217 129 18 chr11 48503044 48503195 -100280277 - AluJb SINE Alu 0 302 169 210 37 0 0 chr11 48503195 48503222 -100280250 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1102 217 129 18 chr11 48503222 48503342 -100280130 - AluJb SINE Alu -133 169 1 253 291 35 0 chr11 48503344 48503430 -100280042 - MIR SINE MIR -101 161 73 318 366 41 17 chr11 48503449 48503621 -100279851 - L3 LINE CR1 -58 1519 1344 492 330 103 57 chr11 48504315 48504703 -100278769 + L2 LINE L2 2866 3271 -1 1633 261 59 2 chr11 48504757 48505178 -100278294 - LTR16A LTR ERVL -5 445 1 668 211 28 16 chr11 48505187 48505553 -100277919 + (TGGA)n Simple_repeat Simple_repeat 1 370 0 2605 122 50 83 chr11 48506805 48507498 -100275974 - SVA Other Other -518 868 393 21 36 0 0 chr11 48507550 48507578 -100275894 + GC_rich Low_complexity Low_complexity 1 28 0 756 170 0 44 chr11 48507719 48507854 -100275618 - FLAM_A SINE Alu 0 133 5 2091 121 49 44 chr11 48508191 48508330 -100275142 - L1MA9 LINE L1 -5 6307 6170 1742 165 0 4 chr11 48508330 48508597 -100274875 - AluJo SINE Alu -11 301 36 2091 121 49 44 chr11 48508597 48508863 -100274609 - L1MA9 LINE L1 -142 6170 5900 497 283 128 27 chr11 48509124 48509343 -100274129 - MIR SINE MIR 0 262 22 417 242 299 0 chr11 48510087 48510281 -100273191 + MLT1H LTR MaLR 298 549 0 2120 141 0 0 chr11 48510338 48510635 -100272837 + AluSq SINE Alu 1 297 -16 233 212 30 61 chr11 48510972 48511038 -100272434 + L2 LINE L2 3246 3309 -4 526 173 182 80 chr11 48511163 48511388 -100272084 + Charlie4 DNA MER1_type 28 275 -1686 1897 140 42 0 chr11 48511389 48511675 -100271797 + AluJo SINE Alu 1 298 -14 874 153 11 11 chr11 48511681 48511858 -100271614 + GA-rich Low_complexity Low_complexity 4 180 0 601 189 107 20 chr11 48511865 48512061 -100271411 + Charlie4 DNA MER1_type 1749 1961 0 182 250 23 0 chr11 48512662 48512706 -100270766 - L2 LINE L2 -362 2910 2866 2361 58 3 52 chr11 48512742 48513051 -100270421 + AluY SINE Alu 1 294 -17 288 0 0 0 chr11 48513320 48513352 -100270120 + (A)n Simple_repeat Simple_repeat 1 32 0 429 257 120 36 chr11 48514059 48514266 -100269206 - MIR SINE MIR -14 248 22 216 67 0 0 chr11 48514306 48514336 -100269136 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1279 235 115 93 chr11 48514660 48514830 -100268642 - HAL1 LINE L1 0 2507 2342 1832 156 0 3 chr11 48514830 48515137 -100268335 + AluJb SINE Alu 1 306 0 1279 235 115 93 chr11 48515137 48515869 -100267603 - HAL1 LINE L1 -165 2342 1578 1814 133 66 0 chr11 48515869 48516140 -100267332 - AluSx SINE Alu -15 297 9 1279 235 115 93 chr11 48516140 48516228 -100267244 - HAL1 LINE L1 -929 1578 1493 316 263 0 13 chr11 48516248 48516324 -100267148 - MER96B DNA MER1_type? 0 417 343 665 199 92 32 chr11 48516331 48516469 -100267003 + MER96B DNA MER1_type? 149 277 -140 2437 110 0 0 chr11 48516469 48516779 -100266693 - AluSx SINE Alu -2 310 1 665 199 92 32 chr11 48516779 48516891 -100266581 + MER96B DNA MER1_type? 277 414 -3 837 234 62 0 chr11 48516933 48517142 -100266330 - HAL1 LINE L1 -1092 1415 1194 567 135 11 11 chr11 48517151 48517240 -100266232 - AluJo SINE Alu -22 290 202 275 81 0 0 chr11 48517240 48517277 -100266195 + Alu SINE Alu 1 37 -264 1206 188 24 5 chr11 48517294 48517501 -100265971 - AluJo SINE Alu -100 212 2 724 291 81 59 chr11 48517522 48518130 -100265342 - HAL1 LINE L1 -1314 1193 573 518 301 38 20 chr11 48518180 48518472 -100265000 - HAL1 LINE L1 -2058 449 153 208 305 61 30 chr11 48518615 48518779 -100264693 - L2 LINE L2 -249 3023 2855 251 367 41 15 chr11 48518958 48519154 -100264318 - L2 LINE L2 -731 2583 2383 231 154 51 0 chr11 48520211 48520250 -100263222 - L2 LINE L2 -6 3266 3226 582 273 124 10 chr11 48520334 48520543 -100262929 + L1ME LINE L1 5561 5793 -328 1585 137 10 95 chr11 48520712 48520889 -100262583 - AluJb SINE Alu -30 282 140 1978 122 0 21 chr11 48520889 48521175 -100262297 - AluSx SINE Alu 0 312 33 1585 137 10 95 chr11 48521175 48521303 -100262169 - AluJb SINE Alu -172 140 3 2276 120 0 0 chr11 48521434 48521735 -100261737 + AluSx SINE Alu 1 301 -11 236 174 0 0 chr11 48522247 48522293 -100261179 - MIR SINE MIR -62 146 101 197 228 35 114 chr11 48522703 48522817 -100260655 + MIR3 SINE MIR 1 105 -103 650 215 51 56 chr11 48524026 48524221 -100259251 - MIR SINE MIR -68 194 1 346 307 104 0 chr11 48526264 48526495 -100256977 + L1ME4a LINE L1 5658 5912 -209 213 154 0 0 chr11 48527088 48527127 -100256345 + (CA)n Simple_repeat Simple_repeat 1 39 0 218 345 0 0 chr11 48527579 48527637 -100255835 - MIR3 SINE MIR -7 201 144 1843 135 71 15 chr11 48528400 48528725 -100254747 - MER61A LTR ERV1 0 343 1 600 295 68 25 chr11 48529101 48529338 -100254134 + MIR SINE MIR 8 254 -8 207 100 0 0 chr11 48529462 48529492 -100253980 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 629 281 222 13 chr11 48529492 48529798 -100253674 - L2 LINE L2 -13 3300 2931 723 283 71 45 chr11 48530753 48531064 -100252408 - L2 LINE L2 -1 3271 2953 181 250 171 11 chr11 48531978 48532066 -100251406 - L2 LINE L2 -1290 2024 1923 329 204 124 44 chr11 48532538 48532651 -100250821 - MIR SINE MIR -56 152 31 290 288 6 69 chr11 48533524 48533684 -100249788 + MIR SINE MIR 63 212 -50 329 256 80 29 chr11 48533991 48534128 -100249344 + MIR SINE MIR 99 242 -20 218 363 29 0 chr11 48534985 48535087 -100248385 - MIR SINE MIR -65 197 93 273 29 0 0 chr11 48535551 48535585 -100247887 + (TC)n Simple_repeat Simple_repeat 1 34 0 191 311 45 38 chr11 48535973 48536105 -100247367 + L2 LINE L2 3101 3233 -80 246 353 108 0 chr11 48536208 48536310 -100247162 + L2 LINE L2 3185 3297 -16 798 298 253 17 chr11 48536788 48537432 -100246040 - L2 LINE L2 -515 2799 2004 304 295 51 0 chr11 48537483 48537561 -100245911 - L2 LINE L2 -44 3228 3147 396 0 0 0 chr11 48539733 48539777 -100243695 + (TAGA)n Simple_repeat Simple_repeat 2 45 0 1294 314 176 31 chr11 48539827 48540811 -100242661 + L3 LINE CR1 326 1451 -126 269 318 93 69 chr11 48541327 48541599 -100241873 - L2 LINE L2 -50 3222 2947 281 211 164 58 chr11 48541824 48541928 -100241544 - L2 LINE L2 0 3313 3199 2056 142 0 10 chr11 48543139 48543448 -100240024 + AluSx SINE Alu 1 306 -6 902 168 26 42 chr11 48544020 48544211 -100239261 + MLT1F LTR MaLR 351 538 -4 708 259 80 9 chr11 48545060 48545272 -100238200 - L3 LINE CR1 -894 683 457 295 209 0 0 chr11 48545276 48545343 -100238129 + L1MC5 LINE L1 7172 7238 -723 601 205 88 65 chr11 48545405 48545620 -100237852 + LTR50 LTR ERVL 3 222 -573 241 214 71 36 chr11 48545732 48545844 -100237628 + LTR50 LTR ERVL 569 684 -111 258 241 0 0 chr11 48545872 48545926 -100237546 + L1MC5 LINE L1 7299 7352 -609 309 225 195 30 chr11 48545993 48546162 -100237310 + L1MC5 LINE L1 7665 7861 -100 667 129 0 0 chr11 48546163 48546264 -100237208 + MSTD LTR MaLR 1 101 -295 732 320 104 36 chr11 48546663 48547222 -100236250 + L1M4 LINE L1 2293 2889 -3257 438 283 98 49 chr11 48547361 48547626 -100235846 + MLT1K LTR MaLR 2 279 -309 343 208 168 32 chr11 48547763 48547888 -100235584 + MLT1K LTR MaLR 437 578 -10 405 216 59 10 chr11 48549344 48549446 -100234026 - MIR SINE MIR -56 206 100 306 0 0 0 chr11 48549454 48549488 -100233984 + (TC)n Simple_repeat Simple_repeat 2 35 0 1091 155 16 16 chr11 48549646 48549839 -100233633 + L1PB4 LINE L1 5961 6153 -3 1794 156 17 33 chr11 48549864 48550166 -100233306 - AluSx SINE Alu -15 297 1 390 231 50 16 chr11 48550306 48550427 -100233045 + LTR67 LTR ERVL 55 179 -378 217 191 24 0 chr11 48550951 48550993 -100232479 + L2 LINE L2 3223 3265 -7 690 297 50 8 chr11 48551052 48551291 -100232181 - MIR SINE MIR -12 250 2 1835 199 22 11 chr11 48551626 48551987 -100231485 + MLT1A1 LTR MaLR 1 365 0 266 256 0 12 chr11 48552766 48552848 -100230624 + L1ME LINE L1 5804 5884 -286 5059 179 88 29 chr11 48553245 48554989 -100228483 - MER52A LTR ERV1 0 1755 1 318 289 0 0 chr11 48555012 48555109 -100228363 + MIR SINE MIR 152 248 -14 204 267 67 128 chr11 48555193 48555388 -100228084 - L2 LINE L2 -94 3178 2996 1145 286 93 19 chr11 48555586 48556005 -100227467 + LTR16A LTR ERVL 1 450 0 2521 144 0 83 chr11 48556546 48557018 -100226454 - Tigger2a DNA MER2_type 0 434 2 257 275 0 14 chr11 48557064 48557133 -100226339 - MIR SINE MIR -171 91 24 543 257 0 0 chr11 48558544 48558653 -100224819 + MER81 DNA DNA 1 109 -5 2183 124 53 28 chr11 48558654 48559009 -100224463 - THE1B LTR MaLR 0 364 1 569 234 169 0 chr11 48559151 48559305 -100224167 - MER5A DNA MER1_type 0 189 10 186 298 0 0 chr11 48559608 48559655 -100223817 - L2 LINE L2 -70 3243 3197 241 245 0 0 chr11 48559708 48559757 -100223715 - L2 LINE L2 0 3313 3265 746 327 49 54 chr11 48559789 48560621 -100222851 + L1MEd LINE L1 6 833 -5286 39414 83 7 6 chr11 48560740 48566875 -100216597 + L1PA6 LINE L1 16 6154 0 720 304 72 19 chr11 48566865 48567493 -100215979 + L1MEd LINE L1 925 1585 -4725 * 24 100 0 0 chr11 48567637 48567717 -100215755 + AT_rich Low_complexity Low_complexity 1 80 0 1693 143 48 31 chr11 48567822 48567873 -100215599 + AluJb SINE Alu 1 50 -262 2065 136 29 32 chr11 48567873 48568249 -100215223 + THE1C LTR MaLR 1 375 0 10398 112 41 7 chr11 48568250 48569778 -100213694 + THE1C-int LTR MaLR 2 1580 0 1844 140 63 33 chr11 48569778 48570142 -100213330 + THE1C LTR MaLR 1 375 0 1693 143 48 31 chr11 48570142 48570380 -100213092 + AluJb SINE Alu 49 298 -14 1438 320 58 12 chr11 48570380 48571020 -100212452 + L1MEc LINE L1 129 797 -5599 372 250 58 112 chr11 48571024 48571212 -100212260 + LTR41 LTR ERVL 10 187 -586 548 193 24 159 chr11 48571539 48571818 -100211654 + LTR41 LTR ERVL 536 795 0 2452 235 46 50 chr11 48571818 48572327 -100211145 + L1MEc LINE L1 796 1306 -5090 1562 169 39 29 chr11 48572327 48572635 -100210837 - AluSx SINE Alu -1 311 1 2452 235 46 50 chr11 48572635 48572776 -100210696 + L1MEc LINE L1 1306 1446 -4950 2169 102 0 3 chr11 48572776 48573080 -100210392 - AluSp SINE Alu -10 303 1 2452 235 46 50 chr11 48573080 48573423 -100210049 + L1MEc LINE L1 1446 1786 -4610 1608 193 66 14 chr11 48573390 48573752 -100209720 + L1ME1 LINE L1 5839 6219 -16 * 736 200 0 15 chr11 48573831 48573961 -100209511 + FLAM_A SINE Alu 1 128 -14 2100 82 0 39 chr11 48574000 48574305 -100209167 + AluY SINE Alu 1 293 -18 726 289 62 24 chr11 48574591 48575009 -100208463 + L1MEc LINE L1 2331 2764 -3451 311 186 43 43 chr11 48575938 48576008 -100207464 - L2 LINE L2 0 3272 3203 213 39 0 0 chr11 48576010 48576036 -100207436 + (ATG)n Simple_repeat Simple_repeat 2 27 0 478 264 283 0 chr11 48576038 48576197 -100207275 - MIR SINE MIR -8 254 51 197 357 0 36 chr11 48577455 48577539 -100205933 - L2 LINE L2 -1 3312 3232 193 430 16 0 chr11 48577654 48577775 -100205697 - L2 LINE L2 -235 3037 2915 744 248 146 63 chr11 48577782 48577846 -100205626 - MLT1H LTR MaLR 0 549 492 1757 152 18 0 chr11 48577846 48578151 -100205321 - AluSx SINE Alu 0 310 1 744 248 146 63 chr11 48578151 48578497 -100204975 - MLT1H LTR MaLR -57 492 104 262 246 200 0 chr11 48578902 48579032 -100204440 + L2 LINE L2 2904 3059 -213 369 0 0 0 chr11 48579253 48579294 -100204178 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 917 243 109 59 chr11 48579854 48580192 -100203280 + MLT1J LTR MaLR 85 439 -72 4059 146 30 10 chr11 48580197 48580918 -100202554 + L1MB3 LINE L1 5444 6179 -4 1693 131 0 31 chr11 48581535 48581845 -100201627 + AluSx SINE Alu 1 301 0 220 283 0 33 chr11 48588784 48588844 -100194628 - MIR SINE MIR 0 262 205 274 317 42 21 chr11 48589938 48590080 -100193392 + MIR3 SINE MIR 49 193 -15 1931 118 3 27 chr11 48590287 48590583 -100192889 + AluSx SINE Alu 1 289 -23 207 299 13 13 chr11 48591457 48591534 -100191938 + CT-rich Low_complexity Low_complexity 2 78 0 23 54 0 0 chr11 48591912 48591949 -100191523 + AT_rich Low_complexity Low_complexity 1 37 0 1030 71 0 21 chr11 48591997 48592138 -100191334 + AluSp/q SINE Alu 163 300 -13 321 234 373 8 chr11 48592274 48592518 -100190954 + L1ME4a LINE L1 5786 6118 -3 479 265 165 62 chr11 48592952 48593273 -100190199 + L2 LINE L2 2921 3274 -39 298 231 280 21 chr11 48593280 48593423 -100190049 - MIR SINE MIR -31 231 52 216 299 75 0 chr11 48594787 48594854 -100188618 - MER91C DNA MER1_type -34 106 35 196 280 120 10 chr11 48594882 48594982 -100188490 - L2 LINE L2 -737 2577 2467 210 286 0 0 chr11 48595299 48595355 -100188117 + MIR SINE MIR 86 141 -67 630 311 69 45 chr11 48595386 48595861 -100187611 + L2 LINE L2 2643 3143 -170 391 206 138 25 chr11 48595935 48596095 -100187377 - LTR50 LTR ERVL -1 794 617 2029 125 20 0 chr11 48596122 48596426 -100187046 + AluSq SINE Alu 1 310 -3 351 254 92 24 chr11 48596426 48596639 -100186833 - LTR50 LTR ERVL -317 478 209 245 116 23 23 chr11 48596722 48596765 -100186707 - LTR50 LTR ERVL -719 76 34 805 103 0 0 chr11 48596765 48596872 -100186600 + AluSx SINE Alu 1 107 -206 1289 124 0 0 chr11 48596947 48597132 -100186340 + AluSx SINE Alu 113 297 -13 312 241 60 0 chr11 48597177 48597260 -100186212 + L2 LINE L2 3226 3313 0 266 330 85 0 chr11 48597272 48597366 -100186106 - L2 LINE L2 -37 3235 3134 2325 91 0 3 chr11 48597833 48598142 -100185330 + AluY SINE Alu 1 308 -3 1397 170 48 125 chr11 48598230 48598450 -100185022 - MLT1A1 LTR MaLR -17 348 167 2123 104 3 0 chr11 48598450 48598739 -100184733 - AluSq SINE Alu -23 290 1 1397 170 48 125 chr11 48598739 48598895 -100184577 - MLT1A1 LTR MaLR -198 167 1 241 210 16 0 chr11 48598902 48598964 -100184508 + L1ME1 LINE L1 6099 6161 -5 372 249 144 40 chr11 48599188 48599325 -100184147 - LTR33 LTR ERVL -8 513 347 2589 105 66 17 chr11 48599325 48599391 -100184081 - MSTA LTR MaLR 0 428 367 2139 109 0 0 chr11 48599391 48599685 -100183787 + AluSx SINE Alu 3 296 -16 2589 105 66 17 chr11 48599685 48600026 -100183446 - MSTA LTR MaLR -61 367 1 372 249 144 40 chr11 48600026 48600089 -100183383 - LTR33 LTR ERVL -174 347 292 459 249 123 28 chr11 48600141 48600320 -100183152 - LTR33 LTR ERVL -326 197 32 180 276 17 17 chr11 48600388 48600446 -100183026 - MIR SINE MIR -86 122 65 409 272 18 12 chr11 48600972 48601109 -100182363 + MIR SINE MIR 17 152 -56 355 289 154 19 chr11 48601128 48601394 -100182078 + L2 LINE L2 2804 3105 -167 741 203 116 84 chr11 48601838 48602217 -100181255 + MLT1G3 LTR MaLR 83 500 -42 311 269 13 0 chr11 48602247 48602325 -100181147 - MIR SINE MIR -64 144 66 21 0 0 0 chr11 48602494 48602515 -100180957 + AT_rich Low_complexity Low_complexity 1 21 0 335 252 209 7 chr11 48603242 48603381 -100180091 - MIR SINE MIR -74 188 22 2137 134 73 18 chr11 48603381 48603724 -100179748 + THE1B LTR MaLR 1 362 -2 740 244 240 39 chr11 48603776 48604218 -100179254 - MLT1H LTR MaLR -18 531 1 347 294 67 8 chr11 48604218 48604337 -100179135 + MIR SINE MIR 86 211 -51 7070 63 5 40 chr11 48604874 48604897 -100178575 - SVA Other Other -2 1384 1362 220 103 0 0 chr11 48604897 48604936 -100178536 + (TTTA)n Simple_repeat Simple_repeat 3 84 0 7070 63 5 40 chr11 48604936 48605898 -100177574 - SVA Other Other -24 1362 433 25 69 0 0 chr11 48605924 48605953 -100177519 + GC_rich Low_complexity Low_complexity 1 29 0 441 465 0 0 chr11 48605953 48606123 -100177349 + C-rich Low_complexity Low_complexity 1 170 0 31 170 0 0 chr11 48606123 48606170 -100177302 + GC_rich Low_complexity Low_complexity 1 47 0 262 269 121 28 chr11 48606294 48606435 -100177037 - MER103 DNA DNA -11 155 2 262 264 0 38 chr11 48606929 48607035 -100176437 + GA-rich Low_complexity Low_complexity 2 103 0 607 213 100 0 chr11 48607239 48607399 -100176073 + MIR3 SINE MIR 16 191 -17 290 260 30 30 chr11 48607473 48607573 -100175899 + MIR SINE MIR 107 206 -56 334 284 101 0 chr11 48607694 48607803 -100175669 - MIR SINE MIR -78 184 65 322 226 20 59 chr11 48609002 48609104 -100174368 - MIR SINE MIR -117 145 48 488 260 21 12 chr11 48609411 48609607 -100173865 - Charlie8 DNA MER1_type -2211 206 20 1918 145 35 0 chr11 48609887 48610176 -100173296 + AluJb SINE Alu 1 299 -13 379 313 15 15 chr11 48610177 48610308 -100173164 + MER5A DNA MER1_type 59 189 0 2391 83 0 3 chr11 48610429 48610730 -100172742 + AluY SINE Alu 1 300 -11 507 242 187 27 chr11 48610837 48611056 -100172416 - MER112 DNA MER1_type -6 254 1 2241 119 0 17 chr11 48611058 48611194 -100172278 + AluSx SINE Alu 1 138 -174 2461 93 3 3 chr11 48611194 48611507 -100171965 + AluSp SINE Alu 1 313 0 2241 119 0 17 chr11 48611507 48611672 -100171800 + AluSx SINE Alu 138 297 -15 674 179 14 0 chr11 48611685 48611830 -100171642 + L1MB7 LINE L1 5046 5192 -954 3125 101 10 39 chr11 48611830 48612260 -100171212 - MER75 DNA T2_type -3 511 70 2341 65 0 4 chr11 48612260 48612537 -100170935 + AluY SINE Alu 1 276 -35 189 74 0 0 chr11 48612540 48612567 -100170905 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 3125 101 10 39 chr11 48612567 48612648 -100170824 - MER75 DNA T2_type -446 68 11 4323 178 18 47 chr11 48612648 48612776 -100170696 + L1MB7 LINE L1 5185 5315 -869 2360 93 0 13 chr11 48612776 48613077 -100170395 + AluSx SINE Alu 1 297 -15 4323 178 18 47 chr11 48613077 48613261 -100170211 + L1MB7 LINE L1 5315 5503 -681 1864 159 0 54 chr11 48613261 48613575 -100169897 + AluJo SINE Alu 3 299 -13 1954 134 21 63 chr11 48613575 48613955 -100169517 - MER47A DNA MER2_type -2 364 1 4323 178 18 47 chr11 48613955 48614270 -100169202 + L1MB7 LINE L1 5502 5825 -359 2217 160 14 63 chr11 48614270 48614337 -100169135 + MSTB LTR MaLR 1 70 -356 2069 139 0 0 chr11 48614337 48614625 -100168847 + AluSq SINE Alu 1 288 -25 2217 160 14 63 chr11 48614625 48615001 -100168471 + MSTB LTR MaLR 70 422 -4 4323 178 18 47 chr11 48615001 48615398 -100168074 + L1MB7 LINE L1 5825 6183 -1 2246 125 0 3 chr11 48615443 48615746 -100167726 + AluSx SINE Alu 1 302 -10 342 322 69 45 chr11 48615882 48616171 -100167301 + L1ME LINE L1 5503 5798 -323 2588 202 32 43 chr11 48616292 48616920 -100166552 + L1MC4a LINE L1 7188 7808 0 565 190 127 44 chr11 48616991 48617149 -100166323 + MLT1C LTR MaLR 7 177 -290 971 109 8 0 chr11 48617178 48617306 -100166166 + AluJ SINE Alu 5 133 -179 951 218 27 51 chr11 48617342 48617526 -100165946 + MLT1C LTR MaLR 211 389 -78 2327 105 0 0 chr11 48617526 48617821 -100165651 + AluSx SINE Alu 1 295 -17 951 218 27 51 chr11 48617821 48617893 -100165579 + MLT1C LTR MaLR 389 461 -6 3796 181 91 12 chr11 48618219 48618991 -100164481 - MER21B LTR ERV1 -30 833 1 333 310 108 33 chr11 48618991 48619198 -100164274 + MLT1K LTR MaLR 362 584 -4 441 343 69 0 chr11 48619207 48619382 -100164090 - MLT1K LTR MaLR -122 466 280 421 217 42 42 chr11 48619609 48619729 -100163743 - MLT1K LTR MaLR -292 257 138 976 149 6 19 chr11 48620106 48620267 -100163205 + AluJ SINE Alu 136 294 -18 309 111 12 148 chr11 48620289 48620333 -100163139 - MER5A DNA MER1_type -80 109 79 2312 85 41 0 chr11 48620333 48620626 -100162846 - AluSg SINE Alu -5 305 1 309 111 12 148 chr11 48620626 48620662 -100162810 - MER5A DNA MER1_type -110 79 40 227 318 91 27 chr11 48621290 48621400 -100162072 + MIR SINE MIR 31 147 -115 297 151 55 27 chr11 48621470 48621543 -100161929 + MIR SINE MIR 100 174 -88 413 115 0 39 chr11 48621552 48621630 -100161842 + BC200 scRNA scRNA 73 147 -53 2037 109 64 0 chr11 48621845 48622128 -100161344 - AluSx SINE Alu -11 301 1 242 279 0 7 chr11 48622490 48622644 -100160828 + (CA)n Simple_repeat Simple_repeat 1 153 0 292 226 0 0 chr11 48623046 48623108 -100160364 + MIR SINE MIR 73 134 -128 261 273 216 18 chr11 48623147 48623374 -100160098 + L2 LINE L2 2949 3220 -93 530 214 89 71 chr11 48625135 48625303 -100158169 + MIR SINE MIR 18 188 -74 235 269 108 0 chr11 48625925 48626018 -100157454 + MIR3 SINE MIR 90 192 -16 803 182 0 0 chr11 48676167 48676288 -100107184 - FRAM SINE Alu -55 121 1 225 0 0 0 chr11 48677278 48677303 -100106169 + (TG)n Simple_repeat Simple_repeat 2 26 0 1489 80 11 0 chr11 48679214 48679401 -100104071 - AluSq SINE Alu -124 189 1 494 155 29 10 chr11 48679406 48679509 -100103963 - L1M4 LINE L1 -356 5822 5718 2062 236 42 70 chr11 48679509 48679561 -100103911 - L1ME3A LINE L1 -213 5957 5905 1897 138 128 53 chr11 48679561 48679802 -100103670 - MSTA LTR MaLR 0 428 144 2134 82 58 14 chr11 48679802 48680096 -100103376 + AluY SINE Alu 1 307 -4 1897 138 128 53 chr11 48680096 48680252 -100103220 - MSTA LTR MaLR -284 144 1 2062 236 42 70 chr11 48680252 48680840 -100102632 - L1ME3A LINE L1 -265 5905 5336 3046 102 46 7 chr11 48680840 48681271 -100102201 - MER83 LTR ERV1 0 448 1 2062 236 42 70 chr11 48681271 48681841 -100101631 - L1ME3A LINE L1 -834 5336 4752 698 212 33 20 chr11 48681843 48681994 -100101478 - MIR SINE MIR -108 154 2 180 0 0 0 chr11 48682488 48682508 -100100964 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2189 114 3 7 chr11 48682558 48682857 -100100615 - AluSx SINE Alu -14 298 1 17872 74 8 4 chr11 48682997 48685845 -100097627 + L1P3 LINE L1 2839 5700 -454 268 264 102 3 chr11 48686096 48686225 -100097247 + MER5A DNA MER1_type 12 165 -24 535 250 162 0 chr11 48689525 48689673 -100093799 - MIR SINE MIR -22 240 69 2407 90 3 3 chr11 48689722 48690032 -100093440 + AluSp SINE Alu 1 310 -3 361 125 18 0 chr11 48690036 48690092 -100093380 + AluS SINE Alu 1 57 -244 374 293 40 0 chr11 48690323 48690422 -100093050 + MIR SINE MIR 47 149 -113 204 316 0 25 chr11 48692907 48692986 -100090486 + CT-rich Low_complexity Low_complexity 3 79 0 25 0 0 0 chr11 48694843 48694868 -100088604 + AT_rich Low_complexity Low_complexity 1 25 0 2058 159 0 6 chr11 48694874 48695188 -100088284 + AluJb SINE Alu 1 312 0 1240 122 0 39 chr11 48695711 48695892 -100087580 - AluSg/x SINE Alu -3 307 134 392 136 0 0 chr11 48695992 48696058 -100087414 - L1MC1 LINE L1 -493 5840 5775 205 353 67 34 chr11 48696149 48696268 -100087204 - MIR SINE MIR -64 144 22 272 227 141 62 chr11 48696421 48696549 -100086923 + MIR3 SINE MIR 3 140 -68 2369 62 0 49 chr11 48697045 48697352 -100086120 + AluY SINE Alu 1 292 -19 267 297 22 22 chr11 48698193 48698284 -100085188 - MIR SINE MIR -64 144 54 1481 208 4 0 chr11 48700739 48701004 -100082468 - AluJo SINE Alu -12 300 35 2408 95 0 0 chr11 48702635 48702931 -100080541 - AluSq SINE Alu -17 296 1 414 301 111 28 chr11 48703004 48703220 -100080252 + MIR SINE MIR 14 247 -15 226 228 40 89 chr11 48704557 48704658 -100078814 + MIR3 SINE MIR 90 185 -23 27 49 0 0 chr11 48705032 48705073 -100078399 + AT_rich Low_complexity Low_complexity 1 41 0 283 269 92 42 chr11 48705368 48705487 -100077985 - MIR SINE MIR -68 140 16 2182 103 7 0 chr11 48705616 48705926 -100077546 - AluSx SINE Alu 0 313 2 243 209 86 67 chr11 48706409 48706514 -100076958 - MIR3 SINE MIR -41 167 61 1604 188 36 0 chr11 48706789 48707066 -100076406 - AluJb SINE Alu -16 296 10 399 187 164 45 chr11 48707458 48707592 -100075880 - L2 LINE L2 0 3313 3164 21 36 0 0 chr11 48708098 48708126 -100075346 + GC_rich Low_complexity Low_complexity 1 28 0 213 313 0 0 chr11 48708541 48708605 -100074867 - MIR SINE MIR -129 133 70 290 239 0 19 chr11 48708904 48708991 -100074481 + MIR SINE MIR 82 163 -45 2159 105 7 0 chr11 48708999 48709294 -100074178 + AluSp SINE Alu 1 297 -16 235 263 11 63 chr11 48709345 48709440 -100074032 - MLT1J LTR MaLR -46 465 376 492 318 20 57 chr11 48709497 48709662 -100073810 - L2 LINE L2 -3 3310 3155 2238 89 0 0 chr11 48709662 48709953 -100073519 + AluSg SINE Alu 1 291 -19 492 318 20 57 chr11 48709953 48710032 -100073440 - L2 LINE L2 -158 3155 3075 188 138 0 0 chr11 48710050 48710079 -100073393 - MER5A DNA MER1_type -153 36 8 282 235 328 0 chr11 48710079 48710198 -100073274 - MLT1L LTR MaLR -453 162 5 189 152 0 0 chr11 48710806 48710839 -100072633 + MIR SINE MIR 119 151 -111 185 305 85 0 chr11 48711093 48711175 -100072297 + MIR SINE MIR 65 153 -109 2212 101 13 7 chr11 48713640 48713948 -100069524 + AluSx SINE Alu 1 310 -2 * 2293 94 0 3 chr11 48713947 48714255 -100069217 + AluSg SINE Alu 1 307 -3 1906 139 7 7 chr11 48715174 48715475 -100067997 + AluJb SINE Alu 1 301 -11 1835 112 7 51 chr11 48715940 48716278 -100067194 + AluY SINE Alu 1 325 0 1931 141 23 0 chr11 48716284 48716588 -100066884 + AluJo SINE Alu 1 311 -1 1861 163 0 3 chr11 48716815 48717122 -100066350 - AluJb SINE Alu -1 311 6 1327 143 0 39 chr11 48717318 48717549 -100065923 + AluJo SINE Alu 87 308 -4 2101 106 0 26 chr11 48717564 48717875 -100065597 + AluSx SINE Alu 10 312 0 486 289 32 6 chr11 48718204 48718360 -100065112 - MIR SINE MIR -101 161 2 440 306 9 0 chr11 48718415 48718526 -100064946 - L2 LINE L2 -6 3266 3155 492 360 50 39 chr11 48718816 48719174 -100064298 - L2 LINE L2 -1 3271 2910 363 294 94 25 chr11 48719647 48719807 -100063665 + MIR SINE MIR 3 173 -89 201 147 0 0 chr11 48719924 48719958 -100063514 + (ATGGTG)n Simple_repeat Simple_repeat 5 38 0 205 239 0 0 chr11 48720402 48720448 -100063024 + (CGG)n Simple_repeat Simple_repeat 2 47 0 376 294 39 13 chr11 48720797 48720950 -100062522 - MIR SINE MIR -50 212 56 382 229 187 54 chr11 48722269 48722435 -100061037 - L2 LINE L2 -19 3294 3107 426 169 52 118 chr11 48722448 48722527 -100060945 - MER5B DNA MER1_type 0 178 110 2141 118 0 10 chr11 48722527 48722833 -100060639 - AluSq SINE Alu -10 303 1 426 169 52 118 chr11 48722833 48722889 -100060583 - MER5B DNA MER1_type -68 110 52 1905 147 6 13 chr11 48722903 48723217 -100060255 - AluJb SINE Alu 0 312 1 461 283 73 0 chr11 48724089 48724266 -100059206 - MIR3 SINE MIR -16 192 3 265 337 149 33 chr11 48724304 48724580 -100058892 - L2 LINE L2 -1 3271 2964 1493 104 85 0 chr11 48724751 48724963 -100058509 + MER30 DNA MER1_type 1 230 0 290 335 80 30 chr11 48726240 48726440 -100057032 - L1ME LINE L1 -299 5822 5613 348 316 49 92 chr11 48726855 48727361 -100056111 - L2 LINE L2 -37 3235 2627 195 235 0 0 chr11 48728242 48728293 -100055179 + CT-rich Low_complexity Low_complexity 1 51 0 323 174 51 62 chr11 48728592 48728698 -100054774 + MIR SINE MIR 98 202 -36 202 280 0 80 chr11 48729441 48729516 -100053956 - L2 LINE L2 -3 3269 3201 2077 132 0 0 chr11 48729799 48730095 -100053377 + AluSx SINE Alu 1 296 -16 252 0 0 0 chr11 48730095 48730123 -100053349 + (TA)n Simple_repeat Simple_repeat 2 29 0 211 304 81 34 chr11 48730448 48730596 -100052876 - L3 LINE CR1 -22 1555 1401 188 301 0 53 chr11 48731471 48731604 -100051868 + MIR3 SINE MIR 5 130 -78 1182 137 0 0 chr11 48731739 48731914 -100051558 - AluSq SINE Alu -136 177 3 232 303 92 21 chr11 48732156 48732298 -100051174 + L1ME3A LINE L1 6011 6162 -8 248 293 23 30 chr11 48732383 48732516 -100050956 - L2 LINE L2 -227 3045 2914 411 114 186 0 chr11 48732539 48732609 -100050863 + AluSc SINE Alu 205 287 -22 1121 321 152 7 chr11 48732737 48733442 -100050030 - L2 LINE L2 -619 2695 1889 595 90 0 0 chr11 48733458 48733536 -100049936 + AluSq/x SINE Alu 59 136 -177 1106 240 51 30 chr11 48733536 48733832 -100049640 + AluSp SINE Alu 2 303 0 229 320 13 0 chr11 48734351 48734429 -100049043 + MIR SINE MIR 63 141 -121 1464 164 107 11 chr11 48735195 48735475 -100047997 - AluJo SINE Alu -5 307 1 1707 168 27 7 chr11 48735487 48735784 -100047688 - AluJb SINE Alu -9 303 1 636 312 96 28 chr11 48737864 48738429 -100045043 - L2 LINE L2 -85 3228 2623 753 113 61 0 chr11 48739199 48739314 -100044158 + MER57-int LTR ERV1 2184 2305 -5232 802 134 0 39 chr11 48739315 48739466 -100044006 + FLAM_C SINE Alu 1 146 0 270 265 84 0 chr11 48740709 48740792 -100042680 - MIR SINE MIR -15 247 158 190 279 73 15 chr11 48740824 48740892 -100042580 + MIR SINE MIR 74 145 -117 908 99 0 0 chr11 48740897 48741018 -100042454 + AluSq/x SINE Alu 1 121 -191 548 163 0 0 chr11 48741156 48741242 -100042230 + AluSg/x SINE Alu 213 298 -11 341 260 130 7 chr11 48741610 48741764 -100041708 + MLT1L LTR MaLR 220 392 -223 352 284 0 20 chr11 48742875 48742977 -100040495 + MIR SINE MIR 29 128 -134 * 576 253 47 18 chr11 48742964 48743158 -100040314 + MIR SINE MIR 58 260 -2 784 288 89 17 chr11 48743420 48743722 -100039750 - MER102b DNA MER1_type -16 325 2 206 224 0 35 chr11 48744077 48744135 -100039337 + (TAA)n Simple_repeat Simple_repeat 1 56 0 614 100 12 2 chr11 48744135 48744391 -100039081 + AluSq SINE Alu 1 312 -1 625 270 58 0 chr11 48744859 48745033 -100038439 - MER58A DNA MER1_type 0 224 41 849 152 7 0 chr11 48745033 48745178 -100038294 + L1MB8 LINE L1 5847 5992 -186 1786 187 79 18 chr11 48745180 48745737 -100037735 + L1MB5 LINE L1 5633 6143 -41 1642 131 6 119 chr11 48745737 48746080 -100037392 + AluJo SINE Alu 1 304 -8 1786 187 79 18 chr11 48746080 48746125 -100037347 + L1MB5 LINE L1 6143 6184 0 215 176 78 0 chr11 48746502 48746553 -100036919 + L2 LINE L2 3247 3301 -12 247 215 47 65 chr11 48746610 48746629 -100036843 + L1ME4a LINE L1 6017 6035 -86 2086 109 3 20 chr11 48746629 48746955 -100036517 - AluSp SINE Alu 0 313 1 247 215 47 65 chr11 48746955 48747042 -100036430 + L1ME4a LINE L1 6035 6121 0 767 166 211 0 chr11 48747309 48747484 -100035988 + MER20 DNA MER1_type 3 214 -5 857 244 31 18 chr11 48747523 48747752 -100035720 - MIR SINE MIR -5 257 26 882 201 11 11 chr11 48747913 48748130 -100035342 - AluJo SINE Alu 0 312 122 1865 149 166 17 chr11 48748250 48748605 -100034867 - MER4A LTR ERV1 0 664 257 364 79 289 0 chr11 48748601 48748677 -100034795 - MER4A LTR ERV1 -566 98 1 * 331 233 181 98 chr11 48749236 48749306 -100034166 - L1ME3A LINE L1 0 6170 6107 2320 72 0 26 chr11 48749306 48749613 -100033859 + AluSg SINE Alu 1 299 -11 331 233 181 98 chr11 48749613 48749675 -100033797 - L1ME3A LINE L1 -63 6107 6027 1680 91 8 4 chr11 48749779 48750022 -100033450 - MLT1B LTR MaLR -139 251 8 207 273 15 0 chr11 48750935 48751001 -100032471 + (TG)n Simple_repeat Simple_repeat 2 68 0 293 68 23 0 chr11 48752177 48752221 -100031251 + (TG)n Simple_repeat Simple_repeat 1 45 0 387 314 77 6 chr11 48755027 48755196 -100028276 - MIR SINE MIR -62 200 20 44 70 0 0 chr11 48755471 48755557 -100027915 + GC_rich Low_complexity Low_complexity 1 86 0 326 248 146 36 chr11 48757081 48757218 -100026254 + MIR SINE MIR 13 164 -98 257 373 35 7 chr11 48757323 48757468 -100026004 - MIR SINE MIR -58 150 45 326 317 134 6 chr11 48757871 48758035 -100025437 + MIR SINE MIR 28 212 -50 516 305 81 0 chr11 48758206 48758380 -100025092 - MIR SINE MIR -8 254 67 2145 90 0 45 chr11 48758590 48758911 -100024561 - AluSx SINE Alu -19 293 3 2052 130 46 3 chr11 48758929 48759275 -100024197 - MER46B DNA MER2_type 0 236 1 201 289 108 0 chr11 48761369 48761452 -100022020 - MIR SINE MIR -62 146 55 26 74 0 0 chr11 48761987 48762041 -100021431 + GC_rich Low_complexity Low_complexity 1 54 0 21 0 0 0 chr11 48762090 48762111 -100021361 + GC_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr11 48762206 48762240 -100021232 + GC_rich Low_complexity Low_complexity 1 34 0 235 300 67 8 chr11 48765712 48765832 -100017640 + L2 LINE L2 3144 3270 -2 263 271 82 24 chr11 48769559 48769644 -100013828 - L2 LINE L2 -38 3275 3186 925 191 0 25 chr11 48769992 48770154 -100013318 + FAM SINE Alu 1 158 -17 793 274 60 8 chr11 48770154 48770402 -100013070 - MIR SINE MIR 0 262 2 224 259 12 12 chr11 48770803 48770884 -100012588 + (CAG)n Simple_repeat Simple_repeat 2 82 0 2174 100 3 7 chr11 48771350 48771650 -100011822 + AluSq SINE Alu 1 299 -14 732 273 26 64 chr11 48772216 48772329 -100011143 - MIR SINE MIR -4 258 142 2206 89 0 3 chr11 48772329 48772649 -100010823 - AluSg SINE Alu 0 319 1 732 273 26 64 chr11 48772649 48772800 -100010672 - MIR SINE MIR -120 142 2 237 132 0 0 chr11 48772812 48772850 -100010622 + (A)n Simple_repeat Simple_repeat 1 38 0 1972 133 10 0 chr11 48773232 48773532 -100009940 + AluSx SINE Alu 1 303 -9 1710 161 27 0 chr11 48773809 48774108 -100009364 - AluJb SINE Alu -4 308 2 347 353 175 26 chr11 48774210 48774592 -100008880 - L2 LINE L2 -1 3271 2833 1813 170 0 0 chr11 48775267 48775637 -100007835 - AluJb SINE Alu 0 370 1 21 0 0 0 chr11 48775697 48775718 -100007754 + AT_rich Low_complexity Low_complexity 1 21 0 1765 146 10 7 chr11 48775916 48776210 -100007262 + AluJo SINE Alu 1 295 -17 324 0 0 0 chr11 48776214 48776250 -100007222 + (TAA)n Simple_repeat Simple_repeat 2 37 0 898 149 5 122 chr11 48777398 48777561 -100005911 + MER3 DNA MER1_type 13 145 -64 2190 108 0 13 chr11 48777561 48777740 -100005732 - AluSq SINE Alu -1 312 137 2184 88 7 0 chr11 48777740 48778037 -100005435 - AluSx SINE Alu -13 299 1 2190 108 0 13 chr11 48778037 48778173 -100005299 - AluSq SINE Alu -176 137 1 898 149 5 122 chr11 48778173 48778231 -100005241 + MER3 DNA MER1_type 145 208 -1 282 188 0 0 chr11 48778189 48778237 -100005235 - MER3 DNA MER1_type -119 90 43 * 183 80 0 0 chr11 48778763 48778788 -100004684 + (A)n Simple_repeat Simple_repeat 1 25 0 2075 109 0 10 chr11 48781711 48782022 -100001450 - AluSx SINE Alu -4 308 1 712 307 37 73 chr11 48782061 48782509 -100000963 - L2 LINE L2 -225 3047 2611 464 269 75 8 chr11 48782511 48782645 -100000827 - MIR SINE MIR -2 260 118 609 252 61 19 chr11 48782650 48782864 -100000608 - MER112 DNA MER1_type -5 255 33 1240 194 8 16 chr11 48783284 48783531 -99999941 - AluSx SINE Alu -13 299 55 33 25 0 0 chr11 48784418 48784458 -99999014 + AT_rich Low_complexity Low_complexity 1 40 0 509 258 147 31 chr11 48785564 48785727 -99997745 - MER5A DNA MER1_type -1 188 7 1144 196 42 21 chr11 48785841 48786081 -99997391 + MIR SINE MIR 15 259 -3 2039 112 3 20 chr11 48787194 48787499 -99995973 + AluSx SINE Alu 8 307 -5 591 247 23 46 chr11 48787499 48787697 -99995775 + MIR SINE MIR 15 210 -52 23 33 0 0 chr11 48787820 48787850 -99995622 + AT_rich Low_complexity Low_complexity 1 30 0 210 240 198 31 chr11 48788273 48788369 -99995103 - MIR SINE MIR -70 192 81 776 303 27 5 chr11 48788384 48788605 -99994867 - MIR SINE MIR -3 259 34 2438 54 0 0 chr11 48789301 48789598 -99993874 + AluY SINE Alu 2 298 -13 536 278 217 0 chr11 48789964 48790176 -99993296 - MIR SINE MIR 0 262 5 444 368 58 12 chr11 48790278 48790520 -99992952 - L2 LINE L2 0 3272 3020 280 294 39 0 chr11 48790517 48790619 -99992853 + MIR SINE MIR 147 252 -10 * 1627 161 45 3 chr11 48792077 48792363 -99991109 + AluJo SINE Alu 1 298 -14 258 32 0 0 chr11 48792556 48792587 -99990885 + (CTG)n Simple_repeat Simple_repeat 3 33 0 180 0 0 0 chr11 48793172 48793192 -99990280 + (A)n Simple_repeat Simple_repeat 1 20 0 307 308 19 0 chr11 48793365 48793469 -99990003 + MIR SINE MIR 41 146 -62 514 238 81 0 chr11 48793874 48794034 -99989438 - L1ME4a LINE L1 -6 6115 5943 2091 101 0 0 chr11 48794229 48794516 -99988956 - AluSx SINE Alu -14 298 12 666 240 31 66 chr11 48795090 48795286 -99988186 - MIR SINE MIR 0 262 74 503 165 35 0 chr11 48795289 48795374 -99988098 - Tigger4(Zombi) DNA MER2_type 0 2731 2644 887 300 10 38 chr11 48796385 48796678 -99986794 - MLT1K LTR MaLR -266 322 38 546 256 60 18 chr11 48796679 48796847 -99986625 + L1MC5 LINE L1 7064 7238 -723 578 237 22 0 chr11 48796872 48797007 -99986465 + L1MC5 LINE L1 7289 7426 -535 2050 123 3 0 chr11 48797125 48797433 -99986039 + AluSc SINE Alu 1 309 0 395 278 67 0 chr11 48797451 48797541 -99985931 - MIR SINE MIR -150 112 17 518 283 198 34 chr11 48797581 48798086 -99985386 - L2 LINE L2 -731 2583 1996 2105 88 7 3 chr11 48799805 48800125 -99983347 - AluSp SINE Alu 0 321 1 381 299 88 59 chr11 48800509 48800591 -99982881 - L1ME4a LINE L1 -70 6051 5973 2294 109 0 0 chr11 48800591 48800904 -99982568 - AluSq SINE Alu 0 313 1 381 299 88 59 chr11 48800904 48801025 -99982447 - L1ME4a LINE L1 -148 5973 5842 29 0 0 0 chr11 48801045 48801074 -99982398 + AT_rich Low_complexity Low_complexity 1 29 0 2169 96 0 7 chr11 48801131 48801432 -99982040 - AluY SINE Alu -12 299 1 247 288 135 27 chr11 48801819 48801930 -99981542 - L2 LINE L2 -2 3311 3189 360 311 171 21 chr11 48802924 48803204 -99980268 - Charlie8 DNA MER1_type -2023 394 73 4559 168 48 22 chr11 48803335 48804338 -99979134 - L1MB5 LINE L1 0 6174 5149 * 5398 222 61 46 chr11 48804322 48805094 -99978378 - L1M4 LINE L1 -1823 4559 3800 1686 192 3 6 chr11 48805094 48805407 -99978065 - AluJb SINE Alu 0 312 1 933 125 128 208 chr11 48805417 48805744 -99977728 - AluJo SINE Alu -1 301 1 5398 222 61 46 chr11 48805744 48807473 -99975999 - L1M4 LINE L1 -2590 3792 2023 452 162 40 0 chr11 48807473 48807572 -99975900 + L1PA16 LINE L1 6063 6165 -1 5398 222 61 46 chr11 48807572 48808053 -99975419 - L1M4 LINE L1 -4359 2023 1550 1061 218 82 4 chr11 48808055 48808298 -99975174 - MLT1F1 LTR MaLR -118 449 188 234 0 0 0 chr11 48808732 48808758 -99974714 + (TG)n Simple_repeat Simple_repeat 2 27 0 192 377 33 49 chr11 48808819 48808941 -99974531 - L2 LINE L2 -14 3258 3139 2372 108 0 0 chr11 48809745 48810051 -99973421 + AluSq SINE Alu 1 306 -7 1233 162 0 10 chr11 48811582 48811779 -99971693 + AluJb SINE Alu 85 279 -33 2324 98 7 0 chr11 48811937 48812234 -99971238 + AluSx SINE Alu 1 299 -13 1400 70 10 30 chr11 48813423 48813624 -99969848 - MER30 DNA MER1_type -33 197 1 234 0 0 0 chr11 48816240 48816266 -99967206 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 2269 91 27 0 chr11 48817367 48817663 -99965809 + AluY SINE Alu 1 304 -7 1102 225 193 12 chr11 48818800 48818979 -99964493 - L2 LINE L2 -4 3309 3164 2175 105 14 3 chr11 48818979 48819275 -99964197 + AluSx SINE Alu 1 299 -13 1102 225 193 12 chr11 48819275 48819591 -99963881 - L2 LINE L2 -149 3164 2714 2275 241 68 25 chr11 48819598 48820432 -99963040 - L1MC4 LINE L1 -2 8040 7171 504 221 0 47 chr11 48820434 48820561 -99962911 - L2 LINE L2 -602 2712 2592 1038 120 0 13 chr11 48820561 48820711 -99962761 + AluJo SINE Alu 1 148 -164 1503 147 0 0 chr11 48820711 48820929 -99962543 + AluJb SINE Alu 93 310 -2 748 250 165 0 chr11 48820935 48821159 -99962313 - L2 LINE L2 -714 2600 2340 1071 199 66 0 chr11 48822447 48822673 -99960799 + Charlie1 DNA MER1_type 1 241 -2520 1428 139 0 5 chr11 48822726 48822934 -99960538 + AluJb SINE Alu 84 290 -22 485 164 48 10 chr11 48822939 48823043 -99960429 + Charlie1 DNA MER1_type 2639 2746 -15 27 0 0 0 chr11 48823085 48823112 -99960360 + AT_rich Low_complexity Low_complexity 1 27 0 2428 91 0 7 chr11 48823550 48823858 -99959614 + AluSg SINE Alu 2 307 -3 216 0 0 0 chr11 48824247 48824271 -99959201 + (T)n Simple_repeat Simple_repeat 1 24 0 2492 64 3 0 chr11 48824911 48825208 -99958264 + AluY SINE Alu 1 298 -13 1632 137 90 34 chr11 48825210 48825531 -99957941 + MER44D DNA MER2_type 1 609 0 2351 96 0 0 chr11 48826262 48826555 -99956917 + AluSq SINE Alu 1 293 -20 1700 199 3 6 chr11 48827734 48828045 -99955427 - AluJb SINE Alu 0 312 3 207 0 0 0 chr11 48828278 48828301 -99955171 + (T)n Simple_repeat Simple_repeat 1 23 0 218 217 0 0 chr11 48831039 48831085 -99952387 + T-rich Low_complexity Low_complexity 1 46 0 293 308 142 18 chr11 48835483 48835652 -99947820 + L3 LINE CR1 1282 1471 -106 466 238 150 12 chr11 48836873 48837033 -99946439 - MIR SINE MIR -70 192 11 1623 141 10 75 chr11 48837740 48837950 -99945522 - AluJb SINE Alu 0 327 105 281 68 23 0 chr11 48837950 48837994 -99945478 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 2066 138 0 0 chr11 48837994 48838276 -99945196 - AluSx SINE Alu -30 282 1 1623 141 10 75 chr11 48838276 48838411 -99945061 - AluJb SINE Alu -220 107 1 293 250 0 14 chr11 48838526 48838598 -99944874 - MIR SINE MIR -112 150 80 2954 3 0 0 chr11 48839718 48840028 -99943444 - AluYa5 SINE Alu 0 311 2 202 303 0 26 chr11 48840034 48840110 -99943362 - MIR SINE MIR -79 183 110 194 292 71 18 chr11 48840381 48840494 -99942978 - MIR SINE MIR -55 153 35 22 0 0 0 chr11 48840620 48840642 -99942830 + GC_rich Low_complexity Low_complexity 1 22 0 195 42 0 0 chr11 48840788 48840812 -99942660 + (CAG)n Simple_repeat Simple_repeat 2 25 0 22 35 0 0 chr11 48840812 48840841 -99942631 + GC_rich Low_complexity Low_complexity 1 29 0 243 178 0 0 chr11 48891009 48891054 -99892418 + MLT1F LTR MaLR 67 111 -456 913 122 8 0 chr11 48891073 48891204 -99892268 + FLAM_C SINE Alu 1 132 -11 1823 140 7 14 chr11 48891213 48891520 -99891952 + AluJb SINE Alu 5 309 0 289 242 11 33 chr11 48891540 48891631 -99891841 + MLT1F LTR MaLR 109 197 -370 534 208 307 20 chr11 48891658 48891932 -99891540 + MLT1F LTR MaLR 177 528 -14 230 333 0 0 chr11 48891937 48892009 -99891463 + MIR SINE MIR 43 114 -94 1085 131 0 0 chr11 48892013 48892166 -99891306 - AluSg/x SINE Alu -19 291 139 1360 145 4 28 chr11 48892266 48892514 -99890958 + THE1C LTR MaLR 134 375 0 1895 187 30 42 chr11 48892514 48893364 -99890108 + L1MCa LINE L1 2077 2909 -3517 681 156 284 0 chr11 48893375 48893516 -99889956 - Tigger3(Golem) DNA MER2_type -1 3028 2848 597 164 9 0 chr11 48893622 48893732 -99889740 - L1MC/D LINE L1 -565 5768 5658 2298 110 3 0 chr11 48893759 48894067 -99889405 - AluSx SINE Alu -3 309 1 423 205 66 15 chr11 48894067 48894259 -99889213 - L1P5 LINE L1 -636 5520 5313 315 313 109 16 chr11 48894339 48894531 -99888941 - L1M4 LINE L1 -944 5202 4993 2492 74 0 0 chr11 48894751 48895060 -99888412 + AluSc SINE Alu 1 309 0 1528 80 45 0 chr11 48895174 48895373 -99888099 - AluSp SINE Alu -103 210 3 1133 264 146 11 chr11 48895381 48895854 -99887618 + L2 LINE L2 2202 2738 -576 914 213 0 0 chr11 48895943 48896103 -99887369 + FRAM SINE Alu 1 160 -6 879 170 49 5 chr11 48896241 48896465 -99887007 - Charlie5 DNA MER1_type -27 2585 2352 662 156 206 0 chr11 48897076 48897236 -99886236 + MER105 DNA DNA 11 203 -1 2364 91 7 0 chr11 48898200 48898496 -99884976 - AluSc SINE Alu -11 298 1 21 57 0 0 chr11 48898556 48898591 -99884881 + AT_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr11 48899492 48899519 -99883953 + AT_rich Low_complexity Low_complexity 1 27 0 349 250 23 11 chr11 48899572 48899660 -99883812 + MIR SINE MIR 164 252 -10 1973 118 0 24 chr11 48900542 48900858 -99882614 - AluSx SINE Alu 0 309 1 2513 53 7 0 chr11 48900962 48901262 -99882210 - AluSp SINE Alu -11 302 1 250 287 52 35 chr11 48901280 48901395 -99882077 + MIR SINE MIR 35 151 -111 315 250 42 17 chr11 48901422 48901542 -99881930 + MER104 DNA Tc2 58 180 0 210 274 32 97 chr11 48901615 48901739 -99881733 + MIR SINE MIR 20 135 -127 305 256 73 0 chr11 48901773 48901855 -99881617 - L2 LINE L2 0 3272 3185 210 245 57 0 chr11 48901929 48901982 -99881490 + L3 LINE CR1 1519 1574 -3 782 294 41 4 chr11 48902028 48902273 -99881199 + MIR SINE MIR 4 257 -5 279 256 33 22 chr11 48902274 48902364 -99881108 + CT-rich Low_complexity Low_complexity 1 91 0 637 182 8 0 chr11 48905563 48905684 -99877788 - AluJb SINE Alu -181 131 10 345 115 0 0 chr11 48905684 48905736 -99877736 - Charlie5 DNA MER1_type -2549 63 12 1937 121 33 0 chr11 48905950 48906250 -99877222 - AluSx SINE Alu 0 309 1 321 280 90 44 chr11 48906313 48906724 -99876748 + L1M4 LINE L1 4378 4807 -1339 2254 88 44 0 chr11 48906974 48907270 -99876202 + AluSc SINE Alu 1 309 0 2359 105 0 0 chr11 48908066 48908370 -99875102 - AluSx SINE Alu -8 304 1 776 224 171 0 chr11 48908596 48908806 -99874666 - MLT1E1 LTR MaLR 0 654 409 499 175 35 9 chr11 48908860 48908974 -99874498 - MLT1E1 LTR MaLR -473 181 65 192 48 71 24 chr11 48909046 48909088 -99874384 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 5606 116 17 3 chr11 48909093 48909751 -99873721 - L1PA16 LINE L1 -9 6157 5481 2565 58 0 10 chr11 48909751 48910060 -99873412 - AluY SINE Alu -5 306 1 5606 116 17 3 chr11 48910060 48910334 -99873138 - L1PA16 LINE L1 -685 5481 5212 1961 140 7 0 chr11 48910627 48910912 -99872560 - AluJo SINE Alu -21 291 5 1609 178 22 4 chr11 48911146 48911422 -99872050 - AluJo SINE Alu -31 281 1 1153 211 18 14 chr11 48912188 48912411 -99871061 + MER58A DNA MER1_type 1 224 0 33 43 0 0 chr11 48913124 48913171 -99870301 + AT_rich Low_complexity Low_complexity 1 47 0 392 268 96 13 chr11 48914108 48914265 -99869207 + MIR SINE MIR 23 192 -70 477 285 104 28 chr11 48914512 48914800 -99868672 - L1MC4a LINE L1 -1763 6045 5736 1448 190 8 4 chr11 48914802 48915055 -99868417 - MLT1D LTR MaLR -2 503 250 387 263 42 11 chr11 48915447 48915542 -99867930 + L2 LINE L2 3212 3309 -4 555 287 24 59 chr11 48916166 48916442 -99867030 + L1ME4a LINE L1 5654 5938 -183 1685 180 23 10 chr11 48916442 48916742 -99866730 - AluJo SINE Alu -8 304 1 555 287 24 59 chr11 48916742 48916754 -99866718 + L1ME4a LINE L1 5938 5949 -172 2038 97 3 55 chr11 48916754 48917063 -99866409 - AluSx SINE Alu -19 293 1 555 287 24 59 chr11 48917063 48917114 -99866358 + L1ME4a LINE L1 5949 5982 -139 747 173 0 0 chr11 48917204 48917314 -99866158 - FLAM_C SINE Alu -29 114 5 36 40 0 0 chr11 48917463 48917513 -99865959 + AT_rich Low_complexity Low_complexity 1 50 0 282 299 77 34 chr11 48917972 48918089 -99865383 - L2 LINE L2 -10 3262 3141 1271 277 101 35 chr11 48918423 48918443 -99865029 + L1M4 LINE L1 3726 3743 -2403 2309 103 3 0 chr11 48918443 48918743 -99864729 + AluSx SINE Alu 1 301 -11 1271 277 101 35 chr11 48918743 48919476 -99863996 + L1M4 LINE L1 3743 4529 -1617 1701 170 51 0 chr11 48919503 48919958 -99863514 + AluJb SINE Alu 2 470 0 1793 143 0 18 chr11 48920065 48920345 -99863127 - AluJo SINE Alu -26 286 12 939 116 17 47 chr11 48920391 48920563 -99862909 + Charlie5 DNA MER1_type 2234 2400 -212 2204 121 0 7 chr11 48921891 48922188 -99861284 + AluSx SINE Alu 1 295 -17 2464 82 0 9 chr11 48922211 48922527 -99860945 + AluSq SINE Alu 1 313 0 260 244 13 13 chr11 48923262 48923340 -99860132 + MER113 DNA MER1_type? 9 86 -435 405 0 0 0 chr11 48923473 48923518 -99859954 + (CA)n Simple_repeat Simple_repeat 2 46 0 2030 103 38 10 chr11 48923532 48923822 -99859650 + AluSq SINE Alu 1 298 -15 1232 256 148 28 chr11 48923923 48924463 -99859009 - HAL1 LINE L1 -1096 1411 807 1210 203 90 32 chr11 48924459 48924864 -99858608 + L1ME1 LINE L1 5502 6161 -5 * 919 201 75 47 chr11 48925139 48925353 -99858119 - MER58A DNA MER1_type -4 220 1 26 0 0 0 chr11 48926554 48926580 -99856892 + AT_rich Low_complexity Low_complexity 1 26 0 233 239 37 92 chr11 48926846 48926955 -99856517 + MLT1L LTR MaLR 4 106 -509 2460 77 7 3 chr11 48928020 48928330 -99855142 + AluSp SINE Alu 1 311 -2 277 275 55 11 chr11 48928530 48928621 -99854851 + MIR SINE MIR 48 142 -66 537 271 0 8 chr11 48928787 48928909 -99854563 - MIR SINE MIR -121 141 21 1767 112 4 8 chr11 48929154 48929395 -99854077 + AluSq SINE Alu 4 243 -70 669 34 82 0 chr11 48929398 48929544 -99853928 + (TA)n Simple_repeat Simple_repeat 1 158 0 228 292 0 11 chr11 48932177 48932266 -99851206 + Charlie7 DNA MER1_type 2443 2530 -82 23 0 0 0 chr11 48932721 48932744 -99850728 + AT_rich Low_complexity Low_complexity 1 23 0 182 91 30 0 chr11 48933611 48933644 -99849828 + (TA)n Simple_repeat Simple_repeat 1 34 0 289 320 10 30 chr11 48933906 48934006 -99849466 - L2 LINE L2 -9 3304 3207 631 216 128 70 chr11 48934171 48934398 -99849074 + MIR SINE MIR 3 242 -20 31 88 0 0 chr11 48934512 48934592 -99848880 + AT_rich Low_complexity Low_complexity 1 80 0 2065 128 7 3 chr11 48934743 48935041 -99848431 + AluSx SINE Alu 1 299 -13 27 29 0 0 chr11 48935092 48935126 -99848346 + AT_rich Low_complexity Low_complexity 1 34 0 405 280 61 8 chr11 48935222 48935377 -99848095 - MIR SINE MIR -62 146 39 207 197 33 16 chr11 48937428 48937489 -99845983 + MIR SINE MIR 156 217 -45 23 0 0 0 chr11 48937612 48937635 -99845837 + AT_rich Low_complexity Low_complexity 1 23 0 291 247 52 0 chr11 48937726 48937803 -99845669 - MIR SINE MIR -98 164 84 305 307 67 10 chr11 48937887 48938007 -99845465 + MIR SINE MIR 21 146 -62 3148 148 31 96 chr11 48938191 48938709 -99844763 - L1MB8 LINE L1 0 6178 5715 2360 86 0 0 chr11 48938709 48939001 -99844471 + AluSx SINE Alu 1 292 -20 3148 148 31 96 chr11 48939001 48939180 -99844292 - L1MB8 LINE L1 -463 5715 5526 244 263 0 0 chr11 48939509 48939566 -99843906 + L2 LINE L2 3210 3266 -6 284 277 96 21 chr11 48939693 48939787 -99843685 - L2 LINE L2 -3 3269 3169 1504 304 94 50 chr11 48939918 48940022 -99843450 + L2 LINE L2 615 713 -2601 2115 137 0 0 chr11 48940022 48940321 -99843151 - AluSg SINE Alu -11 299 1 1504 304 94 50 chr11 48940321 48941348 -99842124 + L2 LINE L2 713 1795 -1519 944 304 89 65 chr11 48941353 48941827 -99841645 + L2 LINE L2 2828 3312 -1 252 302 86 60 chr11 48941984 48942290 -99841182 - L2 LINE L2 -220 3052 2743 1569 148 0 8 chr11 48942333 48942569 -99840903 + AluJb SINE Alu 3 236 -76 492 147 0 0 chr11 48942685 48942760 -99840712 + AluJb SINE Alu 221 295 -17 2231 106 0 13 chr11 48942994 48943296 -99840176 + AluSx SINE Alu 1 298 -14 547 241 103 17 chr11 48943371 48943545 -99839927 + MIR SINE MIR 57 245 -17 339 239 158 58 chr11 48943818 48944130 -99839342 + L1P LINE L1 3373 3693 -2453 349 279 48 92 chr11 48944145 48944461 -99839011 + L1ME4a LINE L1 4046 4347 -1799 2332 89 0 13 chr11 48944538 48944842 -99838630 + AluSx SINE Alu 1 300 -12 925 63 0 0 chr11 48944873 48944984 -99838488 + FRAM SINE Alu 51 161 -15 357 268 55 49 chr11 48945029 48945212 -99838260 + L1ME4a LINE L1 4498 4681 -1465 1488 218 26 79 chr11 48945286 48945753 -99837719 + L1ME4a LINE L1 5088 5578 -543 2089 147 0 0 chr11 48945753 48946053 -99837419 + AluSx SINE Alu 5 304 -8 1476 149 109 18 chr11 48946060 48946336 -99837136 + AluJo SINE Alu 5 305 -7 1488 218 26 79 chr11 48946336 48946408 -99837064 + L1ME4a LINE L1 5584 5658 -463 2197 125 0 3 chr11 48946408 48946712 -99836760 + AluSx SINE Alu 6 308 -4 1488 218 26 79 chr11 48946712 48947084 -99836388 + L1ME4a LINE L1 5658 5942 -179 1668 11 0 0 chr11 48947084 48947267 -99836205 - AluY SINE Alu -10 301 119 1488 218 26 79 chr11 48947267 48947439 -99836033 + L1ME4a LINE L1 5942 6121 0 988 206 143 24 chr11 48947457 48947835 -99835637 - L1ME4a LINE L1 0 6121 5699 2108 133 13 7 chr11 48947904 48948257 -99835215 - AluSx SINE Alu 0 355 1 1063 93 0 0 chr11 48948259 48948388 -99835084 - AluJo/FLAM SINE Alu -173 129 1 282 260 52 59 chr11 48948409 48948644 -99834828 - L2 LINE L2 -52 3220 2935 375 281 183 24 chr11 48948687 48948851 -99834621 - MIR SINE MIR -53 209 20 2348 80 0 0 chr11 48949131 48949432 -99834040 - AluY SINE Alu -10 301 1 785 227 134 5 chr11 48949725 48949919 -99833553 - MIR SINE MIR -3 259 41 2438 70 0 10 chr11 48950033 48950335 -99833137 - AluY SINE Alu -12 299 1 1164 286 77 8 chr11 48951023 48951516 -99831956 + L1ME4a LINE L1 4756 5282 -864 815 230 27 103 chr11 48951541 48951668 -99831804 + L2 LINE L2 2998 3133 -180 2076 148 0 0 chr11 48951668 48951966 -99831506 - AluSx SINE Alu -14 298 1 815 230 27 103 chr11 48951966 48952169 -99831303 + L2 LINE L2 3133 3303 -10 1476 250 5 8 chr11 48952170 48952546 -99830926 + L1ME4a LINE L1 5271 5645 -519 785 178 137 44 chr11 48952557 48952692 -99830780 + MER5C DNA MER1_type 1 122 -202 2772 153 33 12 chr11 48952692 48952840 -99830632 - L1MB3 LINE L1 -8 6175 6032 3029 81 0 26 chr11 48952840 48953225 -99830247 + THE1C LTR MaLR 1 375 0 2772 153 33 12 chr11 48953225 48953566 -99829906 - L1MB3 LINE L1 -151 6032 5676 785 178 137 44 chr11 48953566 48953723 -99829749 + MER5C DNA MER1_type 122 320 -4 1322 111 0 6 chr11 48953779 48953960 -99829512 + AluSg/x SINE Alu 131 310 0 443 246 88 60 chr11 48953973 48954188 -99829284 + MER112 DNA MER1_type 38 258 -2 382 247 66 122 chr11 48954203 48954261 -99829211 + L1ME4a LINE L1 5665 5725 -445 372 22 0 0 chr11 48954261 48954306 -99829166 + (CA)n Simple_repeat Simple_repeat 2 46 0 382 247 66 122 chr11 48954306 48954551 -99828921 + L1ME4a LINE L1 5725 5951 -219 25 31 0 0 chr11 48956165 48956197 -99827275 + AT_rich Low_complexity Low_complexity 1 32 0 243 250 102 80 chr11 48956351 48956439 -99827033 - L2 LINE L2 -15 3257 3168 2461 74 0 3 chr11 48956504 48956803 -99826669 - AluY SINE Alu -13 298 1 2515 58 0 3 chr11 48957947 48958242 -99825230 - AluY SINE Alu -17 294 1 233 217 0 96 chr11 48959133 48959216 -99824256 + L1ME4a LINE L1 5974 6048 -73 483 155 0 0 chr11 48959318 48959402 -99824070 + GA-rich Low_complexity Low_complexity 3 86 0 2293 99 3 0 chr11 48960521 48960815 -99822657 - AluSx SINE Alu -17 295 1 2244 98 3 3 chr11 48961349 48961654 -99821818 + AluSg SINE Alu 1 305 -5 503 256 8 26 chr11 48961777 48961894 -99821578 - L2 LINE L2 0 3272 3158 561 164 58 0 chr11 48963010 48963114 -99820358 - MER103 DNA DNA -47 119 10 240 322 0 23 chr11 48963332 48963419 -99820053 - MIR3 SINE MIR -54 154 70 2076 105 3 7 chr11 48963429 48963714 -99819758 - AluSx SINE Alu -5 307 24 959 128 116 6 chr11 48964674 48964838 -99818634 - MER20 DNA MER1_type 0 219 38 223 214 71 0 chr11 48965345 48965401 -99818071 + MIR SINE MIR 102 161 -101 2329 89 0 3 chr11 48965414 48965716 -99817756 - AluSq SINE Alu -12 301 1 369 287 26 0 chr11 48965811 48965926 -99817546 + MIR SINE MIR 86 203 -59 407 189 22 11 chr11 48966437 48966527 -99816945 - L1ME3A LINE L1 -5 6165 6075 543 210 170 40 chr11 48966714 48966914 -99816558 + MIR SINE MIR 34 259 -3 402 243 36 18 chr11 48967910 48968021 -99815451 - MER117 DNA MER1_type -84 113 1 2238 117 0 3 chr11 48968510 48968818 -99814654 + AluSx SINE Alu 1 307 -5 913 252 120 48 chr11 48969135 48969528 -99813944 + MLT1L LTR MaLR 195 615 0 214 220 184 54 chr11 48969528 48969629 -99813843 - MIR SINE MIR -66 142 42 263 274 78 126 chr11 48969629 48969884 -99813588 - L2 LINE L2 -5 3267 3025 230 170 43 0 chr11 48969919 48969966 -99813506 + L1MD2 LINE L1 6305 6353 -6 626 248 76 60 chr11 48969982 48970296 -99813176 + L1ME3A LINE L1 5849 6167 -3 1510 211 13 7 chr11 48970323 48970631 -99812841 + AluJo SINE Alu 1 310 -2 227 221 168 9 chr11 48970844 48970957 -99812515 - L1ME3A LINE L1 -1898 5910 5780 445 316 73 83 chr11 48971623 48972031 -99811441 - L2 LINE L2 -7 3265 2862 254 213 38 38 chr11 48972110 48972190 -99811282 + L2 LINE L2 3229 3308 -5 2014 123 3 0 chr11 48974337 48974621 -99808851 - AluSx SINE Alu -27 285 1 243 250 0 0 chr11 48975123 48975175 -99808297 + MLT1I LTR MaLR 93 144 -265 449 281 51 51 chr11 48975623 48975897 -99807575 + L1ME4a LINE L1 5621 5894 -227 248 387 0 47 chr11 48975995 48976101 -99807371 - L2 LINE L2 -38 3234 3134 1613 249 84 26 chr11 48976138 48976603 -99806869 + MLT1J LTR MaLR 1 492 -19 252 344 0 25 chr11 48976689 48976811 -99806661 - L2 LINE L2 -218 3054 2936 2310 71 0 0 chr11 48977053 48977334 -99806138 + AluY SINE Alu 17 297 -14 392 263 142 42 chr11 48977471 48977760 -99805712 - L1ME4a LINE L1 -5 6116 5799 2324 99 0 0 chr11 48978499 48978793 -99804679 - AluSx SINE Alu -18 294 1 31 26 0 0 chr11 48979726 48979764 -99803708 + AT_rich Low_complexity Low_complexity 1 38 0 541 13 77 0 chr11 48980482 48980560 -99802912 + GA-rich Low_complexity Low_complexity 1 84 0 560 259 89 38 chr11 48981952 48982358 -99801114 + MLT1K LTR MaLR 139 588 0 449 250 26 26 chr11 48984365 48984481 -99798991 - MER5B DNA MER1_type -59 119 4 389 267 86 0 chr11 48984594 48984710 -99798762 + L2 LINE L2 3188 3313 0 344 121 17 0 chr11 48986818 48986876 -99796596 - AluJo SINE Alu -166 136 78 1929 143 3 7 chr11 48986900 48987193 -99796279 - AluJb SINE Alu -20 292 1 276 30 0 0 chr11 48987541 48987574 -99795898 + (CAA)n Simple_repeat Simple_repeat 1 33 0 269 279 79 57 chr11 48987694 48987834 -99795638 + MIR SINE MIR 70 212 -50 27 73 0 0 chr11 48988488 48988543 -99794929 + AT_rich Low_complexity Low_complexity 1 55 0 21 0 0 0 chr11 48988807 48988828 -99794644 + AT_rich Low_complexity Low_complexity 1 21 0 617 148 39 47 chr11 48989504 48989632 -99793840 + L3 LINE CR1 1334 1460 -117 1033 73 15 0 chr11 48989632 48989768 -99793704 - MER103 DNA DNA -26 140 3 239 307 61 53 chr11 48989870 48989960 -99793512 + L3 LINE CR1 1451 1544 -33 951 70 86 0 chr11 48989960 48990088 -99793384 - MER85 DNA T2_type 0 139 1 239 307 61 53 chr11 48990088 48990111 -99793361 + L3 LINE CR1 1544 1565 -12 21 0 0 0 chr11 48990367 48990388 -99793084 + AT_rich Low_complexity Low_complexity 1 21 0 2380 93 3 3 chr11 48991216 48991526 -99791946 - AluSq SINE Alu -3 310 1 1740 159 3 29 chr11 48991909 48992217 -99791255 - AluJb SINE Alu -12 300 1 754 233 133 24 chr11 48992258 48992335 -99791137 + MIR SINE MIR 3 70 -192 1469 241 45 11 chr11 48992335 48992688 -99790784 + MLT1A1 LTR MaLR 1 365 0 754 233 133 24 chr11 48992688 48992820 -99790652 + MIR SINE MIR 70 235 -27 343 234 106 11 chr11 48993728 48993822 -99789650 + MIR SINE MIR 60 162 -100 1560 252 41 10 chr11 48993845 48994258 -99789214 + LTR16A LTR ERVL 25 450 0 1426 306 27 29 chr11 48994267 48994825 -99788647 + HERV16 LTR ERVL 15 571 -4425 707 243 100 50 chr11 48994837 48995190 -99788282 - MLT1F1 LTR MaLR -196 371 1 551 281 25 0 chr11 48995191 48995312 -99788160 + HERV16 LTR ERVL 2967 3090 -1906 528 302 5 0 chr11 48995373 48995565 -99787907 + HERV16 LTR ERVL 3785 3977 -1677 375 329 89 0 chr11 48995570 48995716 -99787756 + LTR16A LTR ERVL 284 442 -8 415 302 0 0 chr11 48995716 48995822 -99787650 + MIR SINE MIR 157 262 0 2308 84 10 3 chr11 48995977 48996274 -99787198 + AluSp SINE Alu 1 299 -14 3644 197 56 35 chr11 48996284 48996473 -99786999 - L1MD2 LINE L1 -2 6357 6173 2314 110 0 0 chr11 48996473 48996772 -99786700 + AluSx SINE Alu 1 299 -13 3644 197 56 35 chr11 48996772 48997455 -99786017 - L1MD2 LINE L1 -186 6173 5467 997 162 15 5 chr11 48997582 48997786 -99785686 + L1M4 LINE L1 4997 5202 -944 2120 97 3 49 chr11 48997786 48998094 -99785378 + AluY SINE Alu 1 294 -17 960 85 0 28 chr11 48998096 48998237 -99785235 + AluSg/x SINE Alu 173 309 -1 367 195 138 8 chr11 48998248 48998371 -99785101 - L1ME4a LINE L1 -1 6120 5982 3065 108 9 34 chr11 48998440 48998814 -99784658 + Charlie3 DNA MER1_type 34 397 -2309 2302 108 7 0 chr11 48998814 48999121 -99784351 + AluSx SINE Alu 1 309 -3 3065 108 9 34 chr11 48999121 48999192 -99784280 + Charlie3 DNA MER1_type 397 468 -2238 784 122 0 38 chr11 48999192 48999323 -99784149 + Charlie3 DNA MER1_type 2577 2702 -8 323 22 0 22 chr11 48999455 48999500 -99783972 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 708 183 9 0 chr11 48999502 48999617 -99783855 - FLAM_C SINE Alu -17 116 1 1880 104 49 58 chr11 48999625 48999933 -99783539 - AluSx SINE Alu -7 305 1 304 288 18 24 chr11 48999943 49000108 -99783364 - L1P5 LINE L1 -509 5642 5482 518 341 137 30 chr11 49000136 49000624 -99782848 - L2 LINE L2 -568 2746 2151 2084 128 10 0 chr11 49000624 49000922 -99782550 + AluSx SINE Alu 1 301 -11 518 341 137 30 chr11 49000922 49001169 -99782303 - L2 LINE L2 -1163 2151 1932 2552 141 5 3 chr11 49001771 49002154 -99781318 - L1PA16 LINE L1 0 6166 5783 184 241 35 52 chr11 49002322 49002380 -99781092 + MIR3 SINE MIR 138 194 -14 186 229 115 33 chr11 49002652 49002713 -99780759 + L2 LINE L2 3207 3272 0 220 347 10 31 chr11 49002840 49002938 -99780534 - MIR3 SINE MIR -104 104 9 2028 148 0 0 chr11 49003185 49003490 -99779982 + AluJo SINE Alu 1 305 -7 793 161 8 15 chr11 49003497 49003627 -99779845 + FLAM_C SINE Alu 2 130 -3 1340 94 0 0 chr11 49003658 49003829 -99779643 + L1PA11 LINE L1 6004 6174 0 781 264 112 48 chr11 49003871 49004371 -99779101 - HAL1 LINE L1 -98 2409 1878 1564 122 4 0 chr11 49004373 49004603 -99778869 - AluSg/x SINE Alu -3 309 79 259 143 0 0 chr11 49004714 49004756 -99778716 + U2 snRNA snRNA 1 42 -146 1636 198 27 24 chr11 49004756 49005165 -99778307 - HAL1 LINE L1 -859 1648 1239 268 300 130 0 chr11 49005165 49005265 -99778207 - L2 LINE L2 -197 3116 3004 295 176 81 186 chr11 49005308 49005432 -99778040 - HAL1 LINE L1 -1556 951 856 315 127 0 0 chr11 49005432 49005487 -99777985 + L1MA7 LINE L1 6231 6285 -6 295 176 81 186 chr11 49005487 49005572 -99777900 - HAL1 LINE L1 -1651 856 764 897 156 0 19 chr11 49005576 49005604 -99777868 - FRAM SINE Alu -150 162 135 2668 156 57 30 chr11 49005604 49005972 -99777500 + MER66B LTR ERV1 1 386 -100 2227 107 13 3 chr11 49005972 49006272 -99777200 + AluSq SINE Alu 1 303 -10 2668 156 57 30 chr11 49006272 49006376 -99777096 + MER66B LTR ERV1 386 486 0 897 156 0 19 chr11 49006376 49006507 -99776965 - FRAM SINE Alu -177 135 6 550 267 44 6 chr11 49007019 49007199 -99776273 - MIR3 SINE MIR -9 199 13 1333 105 0 0 chr11 49007350 49007521 -99775951 - AluSx SINE Alu -141 171 1 355 318 40 0 chr11 49008096 49008222 -99775250 + L3b LINE CR1 1192 1322 -261 2387 94 0 0 chr11 49008638 49008937 -99774535 - AluSq SINE Alu -14 299 1 231 253 0 40 chr11 49008988 49009063 -99774409 - L2 LINE L2 0 3272 3201 353 230 35 11 chr11 49009108 49009195 -99774277 - MER69 DNA AcHobo -1 2525 2437 535 173 162 124 chr11 49009228 49009413 -99774059 - MER69 DNA AcHobo -1031 195 4 459 271 88 21 chr11 49009415 49009607 -99773865 - MIR SINE MIR -45 217 13 723 227 118 5 chr11 49009684 49009904 -99773568 + L2 LINE L2 3069 3313 0 305 319 8 34 chr11 49010205 49010324 -99773148 + L3b LINE CR1 1393 1508 -75 668 235 113 14 chr11 49010329 49010542 -99772930 - MIR SINE MIR -17 245 12 300 250 36 80 chr11 49011043 49011155 -99772317 + MIR SINE MIR 19 125 -83 311 161 62 37 chr11 49011472 49011561 -99771911 + MIR SINE MIR 99 189 -62 290 232 35 63 chr11 49011665 49011807 -99771665 - L1MC5 LINE L1 -215 7746 7609 180 293 0 0 chr11 49012141 49012182 -99771290 - MIR SINE MIR -9 253 213 22 0 0 0 chr11 49012370 49012392 -99771080 + AT_rich Low_complexity Low_complexity 1 22 0 2278 100 3 13 chr11 49012670 49012981 -99770491 - AluSx SINE Alu -2 310 3 974 231 72 66 chr11 49013006 49013339 -99770133 + L1ME LINE L1 5493 5824 -297 318 67 0 0 chr11 49013404 49013449 -99770023 + (TG)n Simple_repeat Simple_repeat 2 46 0 674 226 10 15 chr11 49013661 49013860 -99769612 - MER113 DNA MER1_type? -322 199 2 210 390 49 24 chr11 49014000 49014123 -99769349 + L2 LINE L2 3097 3222 -50 291 258 70 13 chr11 49014440 49014598 -99768874 + MLT1H LTR MaLR 373 549 0 530 245 31 18 chr11 49014825 49014988 -99768484 - MER117 DNA MER1_type -3 194 30 293 305 34 59 chr11 49015012 49015130 -99768342 - MIR3 SINE MIR -54 154 40 674 297 23 50 chr11 49015134 49015353 -99768119 + MIR SINE MIR 31 243 -19 294 231 104 15 chr11 49016136 49016270 -99767202 - LTR67 LTR ERVL -5 552 407 323 333 54 12 chr11 49016391 49016559 -99766913 - MLT1K LTR MaLR -411 177 3 261 132 113 57 chr11 49016721 49016774 -99766698 + MIR SINE MIR 37 92 -116 21 0 0 0 chr11 49016914 49016935 -99766537 + AT_rich Low_complexity Low_complexity 1 21 0 226 297 16 16 chr11 49017256 49017320 -99766152 + MIR SINE MIR 2 65 -197 1041 277 60 32 chr11 49017360 49017966 -99765506 - L2 LINE L2 -4 3309 2675 8979 140 87 36 chr11 49017982 49019457 -99764015 + L1MC/D LINE L1 6 1602 -4824 2499 47 0 3 chr11 49019457 49019757 -99763715 + AluY SINE Alu 1 299 -12 8979 140 87 36 chr11 49019757 49020202 -99763270 + L1MC/D LINE L1 1602 2023 -4403 781 141 0 0 chr11 49020361 49020489 -99762983 - MER7A DNA MER2_type -189 157 32 5765 237 61 34 chr11 49020531 49021557 -99761915 + L1MC/D LINE L1 2946 3943 -2670 2124 125 7 0 chr11 49021557 49021854 -99761618 + AluSq SINE Alu 1 299 -14 5765 237 61 34 chr11 49021854 49023895 -99759577 + L1MC/D LINE L1 3943 6088 -525 1145 173 0 34 chr11 49023898 49024187 -99759285 + AluJo SINE Alu 1 312 0 2488 67 0 6 chr11 49024189 49024502 -99758970 + AluY SINE Alu 1 311 0 2990 128 9 47 chr11 49024519 49025052 -99758420 + L1MC1 LINE L1 5816 6328 -5 1590 106 9 0 chr11 49025054 49025271 -99758201 + AluSx SINE Alu 1 219 -93 1828 159 14 7 chr11 49026113 49026409 -99757063 - AluJb SINE Alu -14 298 1 21 36 0 0 chr11 49026555 49026583 -99756889 + AT_rich Low_complexity Low_complexity 1 28 0 346 200 0 0 chr11 49027025 49027085 -99756387 + L2 LINE L2 3254 3313 0 516 213 7 13 chr11 49027284 49027439 -99756033 + L1M4 LINE L1 5121 5274 -872 297 310 17 43 chr11 49027703 49027819 -99755653 - MIR SINE MIR -80 128 16 1810 123 30 63 chr11 49027963 49028265 -99755207 + AluSc SINE Alu 1 292 -17 35 54 0 0 chr11 49028992 49029048 -99754424 + AT_rich Low_complexity Low_complexity 1 56 0 4228 234 100 17 chr11 49029502 49030848 -99752624 + L2 LINE L2 1542 3013 -300 392 355 59 12 chr11 49031223 49031392 -99752080 - MER5B DNA MER1_type -1 177 1 183 289 106 29 chr11 49031451 49031555 -99751917 - MIR3 SINE MIR -23 185 74 377 65 0 16 chr11 49032877 49032939 -99750533 + (CA)n Simple_repeat Simple_repeat 2 62 0 21 0 0 0 chr11 49033872 49033893 -99749579 + AT_rich Low_complexity Low_complexity 1 21 0 1712 128 10 79 chr11 49035002 49035213 -99748259 - AluJb SINE Alu -28 284 99 2305 88 7 0 chr11 49035213 49035509 -99747963 - AluSg SINE Alu -12 298 1 1712 128 10 79 chr11 49035509 49035602 -99747870 - AluJb SINE Alu -213 99 1 307 235 37 12 chr11 49038073 49038154 -99745318 - MIR SINE MIR -70 192 110 305 283 19 47 chr11 49038198 49038304 -99745168 - MIR SINE MIR -148 114 12 795 222 113 30 chr11 49038358 49038588 -99744884 - MIR SINE MIR -12 250 2 21 0 0 0 chr11 49040768 49040789 -99742683 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 49042669 49042690 -99740782 + AT_rich Low_complexity Low_complexity 1 21 0 2280 85 3 13 chr11 49042787 49043094 -99740378 + AluSx SINE Alu 1 304 -8 25 31 0 0 chr11 49045486 49045518 -99737954 + GC_rich Low_complexity Low_complexity 1 32 0 236 190 0 35 chr11 49045669 49045727 -99737745 + (CGG)n Simple_repeat Simple_repeat 3 58 0 230 289 132 0 chr11 49046821 49046897 -99736575 - MIR SINE MIR -67 141 56 22 0 0 0 chr11 49047545 49047567 -99735905 + AT_rich Low_complexity Low_complexity 1 22 0 438 179 37 136 chr11 49047655 49047740 -99735732 + MIR SINE MIR 88 151 -111 1858 159 3 0 chr11 49047740 49048036 -99735436 + AluJb SINE Alu 3 299 -13 438 179 37 136 chr11 49048036 49048112 -99735360 + MIR SINE MIR 151 233 -29 338 281 124 33 chr11 49048327 49048448 -99735024 + MIR SINE MIR 65 196 -66 708 179 0 0 chr11 49048665 49048777 -99734695 + AluJo SINE Alu 3 114 -188 683 181 0 36 chr11 49048779 49048917 -99734555 + AluJo SINE Alu 168 300 -12 2093 117 10 3 chr11 49049215 49049513 -99733959 + AluSx SINE Alu 1 300 -12 1219 133 6 0 chr11 49049726 49049906 -99733566 + AluSg/x SINE Alu 122 302 -8 263 203 29 14 chr11 49049908 49049977 -99733495 - L1MC4 LINE L1 -247 7795 7726 243 161 0 0 chr11 49052408 49052464 -99731008 + CT-rich Low_complexity Low_complexity 2 57 0 498 296 58 49 chr11 49052628 49052851 -99730621 + MIR SINE MIR 32 256 -6 987 209 38 0 chr11 49053533 49053743 -99729729 + AluJo SINE Alu 72 289 -23 1806 129 0 0 chr11 49054064 49054319 -99729153 - AluSx SINE Alu -15 297 43 1004 153 0 0 chr11 49054346 49054496 -99728976 - FRAM SINE Alu -16 150 1 769 46 81 0 chr11 49054500 49054763 -99728709 + (TA)n Simple_repeat Simple_repeat 1 284 0 1582 130 57 0 chr11 49054766 49054996 -99728476 - AluSq SINE Alu -70 243 1 493 270 11 49 chr11 49055262 49055447 -99728025 - MIR SINE MIR -21 241 64 496 172 11 0 chr11 49055652 49055745 -99727727 + L1ME4a LINE L1 5558 5651 -470 518 275 233 4 chr11 49055790 49056030 -99727442 + L2 LINE L2 3019 3313 0 2888 201 12 19 chr11 49056913 49057600 -99725872 - L1ME1 LINE L1 -5 6161 5480 2115 117 13 20 chr11 49057707 49058006 -99725466 - AluSx SINE Alu -15 297 1 1037 183 141 24 chr11 49058236 49058526 -99724946 + L1MC3 LINE L1 6779 7102 -683 235 258 0 0 chr11 49058526 49058588 -99724884 + MLT1F1 LTR MaLR 41 102 -465 842 83 0 0 chr11 49058635 49058743 -99724729 + AluSp/q SINE Alu 189 296 -17 3141 114 26 33 chr11 49058743 49059126 -99724346 + L1MC3 LINE L1 7204 7583 -202 12287 25 0 0 chr11 49059126 49061344 -99722128 + L1PA3 LINE L1 3934 6154 -1 3141 114 26 33 chr11 49061344 49061539 -99721933 + L1MC3 LINE L1 7583 7778 -7 338 294 53 48 chr11 49061552 49061659 -99721813 + L1ME4a LINE L1 5754 5864 -257 2206 124 0 0 chr11 49061659 49061957 -99721515 + AluSq SINE Alu 1 298 -15 338 294 53 48 chr11 49061957 49062036 -99721436 + L1ME4a LINE L1 5864 5941 -180 1883 139 7 30 chr11 49062170 49062471 -99721001 - AluJb SINE Alu -18 294 1 5228 195 20 3 chr11 49062501 49062888 -99720584 + L1P LINE L1 4007 4386 -1760 267 31 0 0 chr11 49062888 49062920 -99720552 + (CA)n Simple_repeat Simple_repeat 1 32 0 5228 195 20 3 chr11 49062920 49063671 -99719801 + L1P LINE L1 4386 5165 -981 2110 139 3 0 chr11 49263917 49264212 -99519260 - AluSx SINE Alu -14 298 3 970 179 0 0 chr11 49264240 49264391 -99519081 - AluJb SINE Alu -17 295 145 327 286 21 7 chr11 49264512 49264652 -99518820 - L2 LINE L2 -213 3059 2918 2285 112 6 6 chr11 49264817 49265129 -99518343 + AluSx SINE Alu 1 312 0 396 139 0 0 chr11 49265134 49265213 -99518259 + (GGGA)n Simple_repeat Simple_repeat 4 82 0 401 316 194 15 chr11 49265396 49265864 -99517608 - L2 LINE L2 -744 2570 2019 659 181 0 0 chr11 49265920 49266036 -99517436 + AluJb SINE Alu 177 292 -20 2264 101 0 41 chr11 49266057 49266373 -99517099 + AluSg SINE Alu 1 303 -7 213 328 17 0 chr11 49266743 49266801 -99516671 - L2 LINE L2 0 3272 3214 2257 112 3 10 chr11 49266851 49266985 -99516487 + AluSx SINE Alu 1 134 -178 2395 92 7 0 chr11 49266985 49267280 -99516192 + AluSc SINE Alu 1 297 -12 2257 112 3 10 chr11 49267280 49267457 -99516015 + AluSx SINE Alu 134 310 -2 1701 151 0 4 chr11 49267490 49267741 -99515731 + AluSq SINE Alu 1 250 -63 22 35 0 0 chr11 49268146 49268175 -99515297 + GC_rich Low_complexity Low_complexity 1 29 0 953 178 129 0 chr11 49268429 49268631 -99514841 - MIR SINE MIR -1 261 34 455 262 21 53 chr11 49268635 49268822 -99514650 - MIR SINE MIR -78 184 4 346 277 298 5 chr11 49269588 49269776 -99513696 - MIR SINE MIR -1 261 19 180 0 0 0 chr11 49270495 49270515 -99512957 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2286 107 0 0 chr11 49270517 49270806 -99512666 - AluSq SINE Alu -24 289 1 241 231 275 0 chr11 49271190 49271281 -99512191 - L2 LINE L2 -5 3308 3193 2288 95 27 0 chr11 49271389 49271683 -99511789 - AluSp SINE Alu -11 302 1 21 57 0 0 chr11 49273804 49273839 -99509633 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr11 49273934 49273958 -99509514 + AT_rich Low_complexity Low_complexity 1 24 0 587 81 0 117 chr11 49273959 49274070 -99509402 + HY3 scRNA scRNA 1 98 -3 851 151 214 0 chr11 49274128 49274287 -99509185 + AluSg SINE Alu 2 194 -116 985 106 0 8 chr11 49274408 49274540 -99508932 - AluSq/x SINE Alu -179 133 3 497 285 113 36 chr11 49274551 49274772 -99508700 - MIR SINE MIR -12 250 13 438 311 97 5 chr11 49275445 49275641 -99507831 + MIR SINE MIR 49 262 0 572 345 5 5 chr11 49276321 49276512 -99506960 + MIR SINE MIR 2 192 -70 284 337 6 23 chr11 49276560 49276732 -99506740 - L2 LINE L2 -183 3089 2921 21 0 0 0 chr11 49278144 49278165 -99505307 + GC_rich Low_complexity Low_complexity 1 21 0 442 263 34 0 chr11 49280010 49280128 -99503344 + MIR SINE MIR 29 150 -58 2206 106 10 0 chr11 49280177 49280470 -99503002 + AluSx SINE Alu 1 296 -16 291 114 0 0 chr11 49280560 49280604 -99502868 + (CA)n Simple_repeat Simple_repeat 1 44 0 1285 75 0 13 chr11 49281767 49281926 -99501546 - AluY SINE Alu -154 157 1 457 266 55 8 chr11 49282094 49282222 -99501250 + L2 LINE L2 3179 3312 -1 28 0 0 0 chr11 49282589 49282617 -99500855 + AT_rich Low_complexity Low_complexity 1 28 0 2061 84 0 0 chr11 49282769 49283055 -99500417 - L1PB1 LINE L1 0 6151 5866 871 174 0 52 chr11 49284057 49284229 -99499243 - MER20 DNA MER1_type 0 219 57 370 346 22 53 chr11 49284407 49284635 -99498837 - L2 LINE L2 -25 3247 3027 2344 86 13 16 chr11 49284721 49285035 -99498437 - AluSp SINE Alu 0 313 1 251 239 0 30 chr11 49285848 49285915 -99497557 + MLT1L LTR MaLR 1 65 -550 627 332 55 15 chr11 49286070 49286395 -99497077 + MLT1J LTR MaLR 1 338 -173 230 240 200 13 chr11 49286701 49286776 -99496696 + MLT1K LTR MaLR 327 415 -173 1211 194 32 48 chr11 49286828 49287281 -99496191 - MLT1B LTR MaLR -1 389 1 210 239 30 30 chr11 49287398 49287465 -99496007 + L2 LINE L2 3244 3310 -3 413 237 71 101 chr11 49287540 49287709 -99495763 - MIR SINE MIR -91 171 8 478 317 79 22 chr11 49288124 49288351 -99495121 + LTR33A LTR ERVL 7 246 -277 560 258 96 0 chr11 49288838 49289016 -99494456 + MIR SINE MIR 56 250 -12 2395 79 3 26 chr11 49289334 49289639 -99493833 - AluSx SINE Alu -14 298 1 320 290 43 0 chr11 49289642 49289735 -99493737 - MIR SINE MIR -115 147 51 226 345 78 21 chr11 49290477 49290619 -99492853 + MIR SINE MIR 2 151 -111 1017 108 0 22 chr11 49291161 49291300 -99492172 - AluJo SINE Alu -176 136 1 21 57 0 0 chr11 49291384 49291419 -99492053 + AT_rich Low_complexity Low_complexity 1 35 0 416 260 114 29 chr11 49291512 49291785 -99491687 - L1ME4a LINE L1 -14 6107 5812 1720 141 0 0 chr11 49291894 49292167 -99491305 - AluSx SINE Alu 0 315 43 294 188 58 14 chr11 49292296 49292365 -99491107 + AluSc SINE Alu 211 282 -17 1056 138 38 0 chr11 49292378 49292538 -99490934 + AluSg/x SINE Alu 127 292 -20 1199 185 10 0 chr11 49292575 49292775 -99490697 + AluJb SINE Alu 109 310 -2 235 227 43 80 chr11 49292775 49292938 -99490534 - L1ME4a LINE L1 -45 6076 5920 1308 246 163 25 chr11 49293046 49293328 -99490144 - MLT1J LTR MaLR -2 509 267 1901 193 17 3 chr11 49293328 49293686 -99489786 + MLT1A1 LTR MaLR 1 363 -2 1308 246 163 25 chr11 49293686 49293850 -99489622 - MLT1J LTR MaLR -244 267 1 329 149 108 0 chr11 49293869 49293943 -99489529 - L1ME4a LINE L1 -214 5907 5826 2152 136 0 16 chr11 49293947 49294264 -99489208 - AluJb SINE Alu 0 312 1 229 192 0 0 chr11 49294331 49294383 -99489089 - L1ME4a LINE L1 -299 5822 5771 321 255 83 35 chr11 49294943 49295088 -99488384 - MER5A DNA MER1_type -24 165 14 446 271 233 5 chr11 49295199 49295409 -99488063 + MIR SINE MIR 5 262 0 29 28 0 0 chr11 49295409 49295445 -99488027 + AT_rich Low_complexity Low_complexity 1 36 0 198 288 0 45 chr11 49295487 49295553 -99487919 + MIR SINE MIR 200 262 0 2165 126 10 0 chr11 49295646 49295955 -99487517 + AluSx SINE Alu 1 312 0 1967 155 0 14 chr11 49295970 49296260 -99487212 + AluJb SINE Alu 1 286 -26 429 20 0 0 chr11 49296267 49296317 -99487155 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 2113 101 7 24 chr11 49296336 49296633 -99486839 + AluSx SINE Alu 1 292 -20 477 291 111 41 chr11 49297870 49298114 -99485358 + MIR SINE MIR 2 262 0 * 602 334 51 42 chr11 49298106 49298279 -99485193 + L2 LINE L2 2566 2736 -536 2360 111 0 0 chr11 49298279 49298576 -99484896 + AluSx SINE Alu 1 297 -15 602 334 51 42 chr11 49298576 49298934 -99484538 + L2 LINE L2 2736 3096 -176 2396 112 0 3 chr11 49299082 49299395 -99484077 + AluSq SINE Alu 1 312 -1 330 206 69 69 chr11 49299512 49299643 -99483829 - MIR SINE MIR -70 192 62 244 150 67 17 chr11 49299679 49299739 -99483733 - L2 LINE L2 -40 3232 3170 366 262 19 19 chr11 49299755 49299858 -99483614 + MIR SINE MIR 9 111 -151 734 273 155 31 chr11 49299883 49300185 -99483287 + L2 LINE L2 2699 2962 -351 2008 145 0 42 chr11 49300185 49300331 -99483141 + AluJb SINE Alu 1 129 -183 2253 134 0 0 chr11 49300331 49300638 -99482834 + AluSx SINE Alu 1 307 -5 2008 145 0 42 chr11 49300638 49300802 -99482670 + AluJb SINE Alu 129 298 -14 734 273 155 31 chr11 49300802 49301043 -99482429 + L2 LINE L2 2962 3313 0 2372 113 3 0 chr11 49301114 49301425 -99482047 + AluSx SINE Alu 1 312 0 21 0 0 0 chr11 49301442 49301463 -99482009 + AT_rich Low_complexity Low_complexity 1 21 0 355 273 102 16 chr11 49303046 49303174 -99480298 + L2 LINE L2 3123 3261 -11 213 204 0 74 chr11 49303126 49303180 -99480292 + MIR SINE MIR 210 259 -3 * 294 279 23 81 chr11 49303458 49303501 -99479971 - MER5B DNA MER1_type -16 162 118 2463 96 0 3 chr11 49303501 49303813 -99479659 - AluSx SINE Alu -1 311 1 294 279 23 81 chr11 49303813 49303941 -99479531 - MER5B DNA MER1_type -60 118 1 1030 199 114 33 chr11 49304216 49304433 -99479039 - MER58B DNA MER1_type -2102 318 73 2386 91 7 0 chr11 49304433 49304740 -99478732 + AluSq SINE Alu 2 310 -3 1030 199 114 33 chr11 49304740 49304793 -99478679 - MER58B DNA MER1_type -2347 73 26 278 321 107 6 chr11 49304928 49305087 -99478385 + MIR SINE MIR 32 206 -56 349 327 36 8 chr11 49306216 49306391 -99477081 - MIR SINE MIR -9 199 13 2011 140 3 0 chr11 49307083 49307368 -99476104 + AluSx SINE Alu 1 286 -26 301 236 333 14 chr11 49307758 49307902 -99475570 - MIR3 SINE MIR -13 195 6 633 257 101 68 chr11 49308937 49309059 -99474413 + MIR SINE MIR 18 134 -128 2327 119 0 0 chr11 49309059 49309369 -99474103 + AluSx SINE Alu 1 310 -2 633 257 101 68 chr11 49309369 49309483 -99473989 + MIR SINE MIR 134 262 0 1176 284 54 49 chr11 49309835 49310178 -99473294 + L2 LINE L2 2776 3127 -186 1830 144 0 0 chr11 49310178 49310434 -99473038 - AluSx SINE Alu -18 294 39 1176 284 54 49 chr11 49310434 49310622 -99472850 + L2 LINE L2 3127 3313 0 2390 85 3 0 chr11 49310674 49310967 -99472505 - AluSx SINE Alu -11 301 8 281 273 93 41 chr11 49311104 49311276 -99472196 + L1MC4a LINE L1 5256 5436 -2372 727 150 0 16 chr11 49311285 49311412 -99472060 + AluSq/x SINE Alu 2 126 -186 1707 174 4 7 chr11 49311429 49311705 -99471767 + AluJb SINE Alu 24 298 -14 1410 239 106 32 chr11 49311705 49311746 -99471726 + L1MC4a LINE L1 5432 5469 -2339 2114 111 24 3 chr11 49311746 49312043 -99471429 + AluY SINE Alu 1 303 -8 1410 239 106 32 chr11 49312043 49312474 -99470998 + L1MC4a LINE L1 5469 5939 -1869 1131 144 59 11 chr11 49312489 49312676 -99470796 + AluJo SINE Alu 12 207 -105 2409 81 7 0 chr11 49312680 49312978 -99470494 + AluY SINE Alu 12 311 0 342 0 0 0 chr11 49312986 49313024 -99470448 + (CA)n Simple_repeat Simple_repeat 2 39 0 439 198 135 0 chr11 49313383 49313494 -99469978 + MIR SINE MIR 76 201 -61 265 216 4 0 chr11 49313603 49313688 -99469784 - L1P LINE L1 -822 5342 5256 1987 118 4 15 chr11 49314066 49314180 -99469292 + AluSx SINE Alu 23 137 -175 2545 78 0 3 chr11 49314180 49314488 -99468984 + AluY SINE Alu 1 307 -4 1987 118 4 15 chr11 49314488 49314645 -99468827 + AluSx SINE Alu 137 291 -21 314 258 87 22 chr11 49315206 49315344 -99468128 + MIR SINE MIR 5 151 -68 237 250 106 48 chr11 49315744 49315848 -99467624 + MIR SINE MIR 141 250 -12 198 176 0 0 chr11 49315931 49315965 -99467507 - L2 LINE L2 -1 3271 3238 338 172 58 46 chr11 49316510 49316597 -99466875 - MIR3 SINE MIR -5 203 116 307 300 77 15 chr11 49317471 49317601 -99465871 + MIR3 SINE MIR 11 148 -60 596 244 62 6 chr11 49317602 49317663 -99465809 + MIR SINE MIR 94 150 -112 888 226 6 6 chr11 49317663 49317840 -99465632 - MER104 DNA MER2_type -2 178 2 596 244 62 6 chr11 49317840 49317938 -99465534 + MIR SINE MIR 150 262 0 263 295 39 0 chr11 49318465 49318543 -99464929 - MIR3 SINE MIR -29 179 99 342 0 0 0 chr11 49318545 49318583 -99464889 + (CA)n Simple_repeat Simple_repeat 2 39 0 515 327 184 3 chr11 49319173 49319564 -99463908 + L2 LINE L2 2852 3313 0 307 274 5 135 chr11 49320934 49321149 -99462323 - L2 LINE L2 -81 3191 3005 2120 119 0 0 chr11 49321165 49321476 -99461996 + AluSq SINE Alu 1 311 -2 31 68 0 0 chr11 49322149 49322208 -99461264 + GC_rich Low_complexity Low_complexity 1 59 0 211 228 0 101 chr11 49323143 49323222 -99460250 + CT-rich Low_complexity Low_complexity 3 73 0 194 0 39 0 chr11 49323382 49323408 -99460064 + (CA)n Simple_repeat Simple_repeat 1 27 0 413 201 83 69 chr11 49323716 49323860 -99459612 + MIR3 SINE MIR 15 160 -48 299 244 28 134 chr11 49324273 49324390 -99459082 + MIR SINE MIR 7 88 -174 2523 41 0 19 chr11 49324390 49324707 -99458765 - AluY SINE Alu 0 311 1 299 244 28 134 chr11 49324707 49324839 -99458633 + MIR SINE MIR 88 232 -30 239 254 28 14 chr11 49324893 49324964 -99458508 + MIR SINE MIR 65 136 -72 346 252 70 35 chr11 49326229 49326372 -99457100 + L2 LINE L2 3166 3313 0 769 271 153 3 chr11 49326746 49327067 -99456405 + L2 LINE L2 2922 3290 -23 1118 254 0 18 chr11 49327130 49327413 -99456059 + AluJb SINE Alu 9 286 -26 1789 154 0 11 chr11 49327978 49328257 -99455215 + AluJo SINE Alu 1 276 -36 2163 113 0 13 chr11 49328749 49329051 -99454421 + AluSq SINE Alu 1 298 -15 184 263 35 0 chr11 49330328 49330385 -99453087 + L2 LINE L2 2927 2985 -287 371 152 0 63 chr11 49330393 49330472 -99453000 + MIR SINE MIR 74 147 -61 284 257 124 26 chr11 49330459 49330572 -99452900 + L2 LINE L2 3149 3272 0 * 2147 95 40 0 chr11 49330899 49331233 -99452239 + AluSg SINE Alu 3 348 0 461 328 116 0 chr11 49331472 49331661 -99451811 + MIR SINE MIR 52 262 0 2048 144 3 10 chr11 49331665 49331978 -99451494 - AluSx SINE Alu -1 311 1 866 267 42 12 chr11 49332388 49332628 -99450844 + MIR SINE MIR 14 260 -2 2038 130 3 3 chr11 49332692 49332993 -99450479 + AluSx SINE Alu 1 301 -11 282 372 60 28 chr11 49333104 49333354 -99450118 - L2 LINE L2 -162 3110 2853 245 206 34 49 chr11 49334809 49334892 -99448580 + MIR SINE MIR 69 144 -64 * 798 236 66 29 chr11 49334881 49335122 -99448350 - MIR SINE MIR 0 262 13 189 236 69 28 chr11 49335130 49335202 -99448270 + MIR3 SINE MIR 125 199 -9 185 329 106 24 chr11 49335985 49336070 -99447402 - L2 LINE L2 -2 3270 3179 1722 124 44 25 chr11 49336233 49336507 -99446965 - AluJo SINE Alu -23 289 11 316 309 146 0 chr11 49336601 49336711 -99446761 + L2 LINE L2 3147 3272 0 288 254 105 35 chr11 49338067 49338181 -99445291 - MIR SINE MIR -71 137 16 204 363 10 20 chr11 49339974 49340076 -99443396 + MIR3 SINE MIR 54 154 -54 332 284 18 18 chr11 49341132 49341241 -99442231 + MIR SINE MIR 104 212 -50 598 178 86 193 chr11 49341462 49341731 -99441741 - MIR SINE MIR -1 261 22 2029 146 7 3 chr11 49342012 49342321 -99441151 + AluSx SINE Alu 1 310 -2 767 211 17 6 chr11 49342410 49342585 -99440887 - MIR SINE MIR 0 262 86 661 224 65 53 chr11 49342599 49342844 -99440628 + MER112 DNA MER1_type 8 255 -5 186 328 16 0 chr11 49342846 49342910 -99440562 - MIR SINE MIR -177 85 21 250 333 17 17 chr11 49343272 49343446 -99440026 + (ATGGTG)n Simple_repeat Simple_repeat 1 174 0 945 147 159 0 chr11 49343979 49344142 -99439330 + MER5A DNA MER1_type 1 189 0 994 60 23 15 chr11 49344183 49344316 -99439156 + AluSq/x SINE Alu 1 134 -178 2590 40 0 0 chr11 49344320 49344624 -99438848 + AluY SINE Alu 1 304 -7 1331 178 3 81 chr11 49344630 49344951 -99438521 + AluJb SINE Alu 1 296 -16 1784 119 3 82 chr11 49344953 49345272 -99438200 + AluSx SINE Alu 1 294 -18 1974 116 28 0 chr11 49345278 49345562 -99437910 + AluSx SINE Alu 5 296 -16 1566 84 0 10 chr11 49345563 49345807 -99437665 + AluY SINE Alu 82 323 0 314 309 21 0 chr11 49346061 49346155 -99437317 + MIR SINE MIR 59 154 -108 253 282 63 73 chr11 49346145 49346289 -99437183 - MIR SINE MIR 0 262 119 * 2239 110 0 0 chr11 49346289 49346590 -99436882 + AluSg SINE Alu 1 301 -9 253 282 63 73 chr11 49346590 49346651 -99436821 - MIR SINE MIR -143 119 59 571 268 36 14 chr11 49346733 49346943 -99436529 + MIR SINE MIR 31 247 -15 1683 150 4 0 chr11 49346951 49347204 -99436268 + AluSx SINE Alu 1 254 -58 27 0 0 0 chr11 49347232 49347259 -99436213 + AT_rich Low_complexity Low_complexity 1 27 0 1986 138 0 16 chr11 49347307 49347619 -99435853 + AluJo SINE Alu 1 307 -5 373 242 0 97 chr11 49347698 49347782 -99435690 + MIR SINE MIR 119 189 -73 2178 91 10 0 chr11 49347782 49348079 -99435393 + AluSp SINE Alu 3 302 -11 373 242 0 97 chr11 49348079 49348118 -99435354 + MIR SINE MIR 189 230 -32 22 0 0 0 chr11 49348258 49348280 -99435192 + AT_rich Low_complexity Low_complexity 1 22 0 827 197 0 14 chr11 49348297 49348444 -99435028 - AluJb SINE Alu -32 280 136 352 304 82 14 chr11 49348948 49349168 -99434304 + L2 LINE L2 2475 2709 -605 390 322 0 0 chr11 49349193 49349283 -99434189 - L1MC4 LINE L1 -1339 6703 6614 384 322 0 0 chr11 49349209 49349299 -99434173 + L1MC4 LINE L1 6614 6703 -1339 * 252 0 0 0 chr11 49349299 49349327 -99434145 + (TG)n Simple_repeat Simple_repeat 2 29 0 180 0 0 0 chr11 49349326 49349346 -99434126 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 2417 55 0 3 chr11 49349346 49349638 -99433834 - AluY SINE Alu -20 291 1 1021 135 18 0 chr11 49349641 49349804 -99433668 - FRAM SINE Alu -7 169 4 1818 158 0 41 chr11 49349947 49350050 -99433422 - AluJb SINE Alu -9 303 197 1902 140 10 16 chr11 49350050 49350358 -99433114 - AluSx SINE Alu -6 306 1 1818 158 0 41 chr11 49350358 49350570 -99432902 - AluJb SINE Alu -115 197 1 603 239 11 40 chr11 49350572 49350748 -99432724 - MIR SINE MIR -10 252 82 333 345 18 0 chr11 49352128 49352238 -99431234 - MIR SINE MIR -127 135 24 284 238 10 99 chr11 49352294 49352395 -99431077 + MIR3 SINE MIR 110 201 -7 187 382 36 9 chr11 49352679 49352789 -99430683 + L2 LINE L2 2972 3084 -188 1977 123 3 3 chr11 49353431 49353754 -99429718 - AluSx SINE Alu 0 323 1 977 133 40 0 chr11 49354534 49354684 -99428788 - AluSg/x SINE Alu -20 292 137 2002 118 24 0 chr11 49354684 49354981 -99428491 - AluSc SINE Alu -5 304 1 183 282 0 0 chr11 49355029 49355068 -99428404 - MIR SINE MIR -137 71 33 502 202 19 11 chr11 49355359 49355486 -99427986 - MIR SINE MIR -48 160 34 1033 154 39 0 chr11 49356330 49356512 -99426960 + MER5A DNA MER1_type 1 189 0 475 247 139 36 chr11 49356523 49356590 -99426882 + MER5A DNA MER1_type 4 63 -126 1993 113 35 0 chr11 49356590 49356874 -99426598 + AluSq SINE Alu 1 294 -19 475 247 139 36 chr11 49356874 49356972 -99426500 + MER5A DNA MER1_type 63 186 -3 262 267 112 9 chr11 49356993 49357109 -99426363 + MIR3 SINE MIR 8 135 -73 225 242 165 0 chr11 49357267 49357358 -99426114 + MIR SINE MIR 145 250 -12 2192 98 0 3 chr11 49357676 49357971 -99425501 - AluSx SINE Alu -14 298 5 214 384 152 0 chr11 49358340 49358491 -99424981 - L2 LINE L2 -3 3269 3096 1913 108 35 10 chr11 49358516 49358823 -99424649 + AluSx SINE Alu 1 312 0 208 319 14 14 chr11 49358823 49358892 -99424580 - MIR SINE MIR -5 257 189 201 291 36 0 chr11 49360407 49360462 -99423010 - MIR SINE MIR -130 78 22 433 317 0 54 chr11 49360588 49360674 -99422798 + MER117 DNA MER1_type 2 76 -121 2151 108 3 3 chr11 49360674 49360970 -99422502 + AluSx SINE Alu 1 296 -16 433 317 0 54 chr11 49360970 49361050 -99422422 + MER117 DNA MER1_type 76 159 -38 311 286 152 28 chr11 49361092 49361270 -99422202 + MIR SINE MIR 1 200 -62 324 391 93 13 chr11 49362036 49362261 -99421211 + MIR SINE MIR 20 262 0 195 338 0 0 chr11 49362265 49362333 -99421139 - MIR SINE MIR -74 134 67 2131 118 0 3 chr11 49362335 49362632 -99420840 + AluSx SINE Alu 1 296 -16 707 244 95 45 chr11 49362720 49362941 -99420531 - MIR SINE MIR -25 237 6 776 156 31 0 chr11 49364288 49364416 -99419056 - FLAM_C SINE Alu -1 132 1 306 293 136 41 chr11 49364418 49364565 -99418907 - HAL1 LINE L1 -2337 170 10 824 226 7 0 chr11 49364605 49364751 -99418721 - FRAM SINE Alu -32 144 1 227 268 28 28 chr11 49364909 49364980 -99418492 - MIR SINE MIR -17 245 175 440 310 178 0 chr11 49365022 49365092 -99418380 + MIR SINE MIR 16 72 -190 2270 239 90 24 chr11 49365092 49365309 -99418163 + MLT1E1 LTR MaLR 1 202 -452 2067 130 0 10 chr11 49365309 49365617 -99417855 + AluSx SINE Alu 1 305 -7 2270 239 90 24 chr11 49365617 49366013 -99417459 + MLT1E1 LTR MaLR 202 654 0 440 310 178 0 chr11 49366013 49366139 -99417333 + MIR SINE MIR 72 247 -15 1911 123 43 7 chr11 49366170 49366471 -99417001 + AluSx SINE Alu 1 312 0 2099 120 0 13 chr11 49366749 49367048 -99416424 - AluSg SINE Alu -15 295 1 940 171 0 29 chr11 49367077 49367247 -99416225 + FRAM SINE Alu 1 40 0 923 118 0 22 chr11 49367330 49367466 -99416006 + FLAM_C SINE Alu 1 133 0 213 309 82 27 chr11 49367622 49367732 -99415740 - MIR SINE MIR -143 119 4 220 222 25 12 chr11 49370264 49370345 -99413127 + (CGGGG)n Simple_repeat Simple_repeat 2 83 0 788 164 0 16 chr11 49372336 49372464 -99411008 - FLAM_C SINE Alu -17 126 1 306 301 83 30 chr11 49372468 49372601 -99410871 - MIR SINE MIR -116 146 7 * 417 312 58 12 chr11 49372589 49372762 -99410710 + MER5A DNA MER1_type 7 187 -2 273 294 63 7 chr11 49373340 49373483 -99409989 + MER117 DNA MER1_type 44 194 -3 358 276 73 16 chr11 49375888 49376011 -99407461 - MIR SINE MIR -54 208 79 1698 173 0 30 chr11 49376963 49377264 -99406208 - AluJo SINE Alu -20 292 1 305 320 142 7 chr11 49377515 49377855 -99405617 - L1MC4a LINE L1 -206 5964 5551 2485 55 7 0 chr11 49377868 49378176 -99405296 - AluY SINE Alu -1 310 1 384 291 2 43 chr11 49378234 49378395 -99405077 - MIR SINE MIR -62 146 41 2319 83 7 0 chr11 49378511 49378812 -99404660 - AluSp SINE Alu -10 303 1 184 405 36 0 chr11 49379243 49379327 -99404145 - L2 LINE L2 -99 3173 3087 678 249 46 60 chr11 49379451 49379668 -99403804 + MIR SINE MIR 13 226 -36 560 207 140 11 chr11 49380798 49380977 -99402495 + Charlie1a DNA MER1_type 1 202 -1253 764 241 94 11 chr11 49381003 49381268 -99402204 + Charlie1a DNA MER1_type 275 561 -894 1265 171 84 7 chr11 49381370 49381679 -99401793 + Charlie1a DNA MER1_type 1095 1427 -28 445 219 0 10 chr11 49381673 49381769 -99401703 + MER21B LTR ERV1 320 414 -449 * 2317 91 0 0 chr11 49381786 49382083 -99401389 + AluSg SINE Alu 1 297 -13 183 299 93 28 chr11 49382233 49382340 -99401132 + MIR SINE MIR 37 150 -58 391 349 86 23 chr11 49383805 49383980 -99399492 - MIR SINE MIR -25 237 52 187 293 49 12 chr11 49384626 49384708 -99398764 - MIR3 SINE MIR -43 165 81 687 292 93 0 chr11 49385153 49385369 -99398103 + MIR SINE MIR 27 262 0 485 319 88 9 chr11 49385447 49385663 -99397809 + MIR SINE MIR 22 254 -8 333 160 27 27 chr11 49389478 49389553 -99393919 + MIR SINE MIR 16 90 -172 276 286 39 0 chr11 49389538 49389615 -99393857 + L2 LINE L2 3234 3313 0 * 1948 72 116 14 chr11 49390205 49390482 -99392990 + AluSg SINE Alu 1 305 -5 24 0 0 0 chr11 49392051 49392075 -99391397 + AT_rich Low_complexity Low_complexity 1 24 0 2080 120 3 3 chr11 49392082 49392382 -99391090 + AluSq SINE Alu 1 300 -13 667 139 35 26 chr11 49392392 49392507 -99390965 + FLAM_A SINE Alu 1 116 -17 366 291 79 0 chr11 49394420 49394547 -99388925 + MIR SINE MIR 42 178 -84 1430 89 0 0 chr11 49394557 49394748 -99388724 - AluSg/x SINE Alu -1 311 121 2185 119 7 0 chr11 49394769 49395079 -99388393 - AluSx SINE Alu 0 312 1 293 246 0 0 chr11 49395091 49395152 -99388320 - L2 LINE L2 -5 3267 3207 245 237 111 0 chr11 49396917 49397031 -99386441 + MIR SINE MIR 59 181 -56 206 318 16 0 chr11 49398522 49398585 -99384887 + L2 LINE L2 2191 2254 -1060 790 281 147 20 chr11 49398963 49399405 -99384067 + L2 LINE L2 2815 3312 -1 25 51 0 0 chr11 49402000 49402039 -99381433 + GC_rich Low_complexity Low_complexity 1 39 0 193 85 0 64 chr11 49403251 49403298 -99380174 + (CGGGGG)n Simple_repeat Simple_repeat 2 45 0 25 51 0 0 chr11 49403400 49403439 -99380033 + GC_rich Low_complexity Low_complexity 1 39 0 22 56 0 0 chr11 49403473 49403509 -99379963 + GC_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr11 49404247 49404268 -99379204 + GC_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr11 49404490 49404519 -99378953 + GC_rich Low_complexity Low_complexity 1 29 0 453 331 174 13 chr11 49408433 49408817 -99374655 - L2 LINE L2 0 3272 2827 682 154 81 0 chr11 49409012 49409135 -99374337 - FLAM_A SINE Alu 0 133 1 614 173 24 16 chr11 49409142 49409269 -99374203 - MIR SINE MIR -56 206 79 228 315 71 31 chr11 49409946 49410073 -99373399 + MIR SINE MIR 19 150 -58 228 302 94 10 chr11 49410252 49410348 -99373124 - MIR3 SINE MIR -39 169 66 663 309 12 52 chr11 49410613 49410862 -99372610 - MIR SINE MIR -1 261 23 210 345 9 26 chr11 49411601 49411714 -99371758 + (CGTG)n Simple_repeat Simple_repeat 4 114 0 26 30 0 0 chr11 49413287 49413320 -99370152 + GC_rich Low_complexity Low_complexity 1 33 0 225 274 11 11 chr11 49413359 49413454 -99370018 + (CGGG)n Simple_repeat Simple_repeat 1 95 0 31 58 0 0 chr11 49413555 49413607 -99369865 + GC_rich Low_complexity Low_complexity 1 52 0 24 0 0 0 chr11 49413738 49413762 -99369710 + GC_rich Low_complexity Low_complexity 1 24 0 257 307 79 26 chr11 49415675 49415789 -99367683 + MIR SINE MIR 22 141 -67 1956 131 20 10 chr11 49416033 49416367 -99367105 + AluSx SINE Alu 1 312 0 228 271 38 19 chr11 49416479 49416615 -99366857 + MIR SINE MIR 15 203 -59 1288 81 6 6 chr11 49416790 49416964 -99366508 + AluSp SINE Alu 1 174 -139 418 277 36 9 chr11 49417436 49417548 -99365924 - MIR3 SINE MIR -22 186 72 1929 86 63 7 chr11 49417825 49418094 -99365378 - AluSx SINE Alu -28 284 1 211 333 14 14 chr11 49420328 49420400 -99363072 - MIR3 SINE MIR -23 185 114 1939 107 30 0 chr11 49420735 49421006 -99362466 - AluY SINE Alu -32 279 1 2198 101 0 0 chr11 49421008 49421304 -99362168 - AluSx SINE Alu -16 296 1 2132 114 3 0 chr11 49421307 49421604 -99361868 - AluSq SINE Alu -15 298 1 2106 96 10 3 chr11 49421604 49421895 -99361577 - AluSq SINE Alu -20 293 1 299 240 20 25 chr11 49422126 49422207 -99361265 + MIR SINE MIR 34 112 -109 1805 150 19 3 chr11 49422713 49423020 -99360452 - AluJb SINE Alu 0 312 1 1924 125 18 0 chr11 49423487 49423767 -99359705 - AluSg SINE Alu -25 285 1 2161 95 0 14 chr11 49424592 49424888 -99358584 - AluSg SINE Alu -9 301 10 224 253 89 137 chr11 49424900 49425046 -99358426 + L2 LINE L2 3133 3271 -1 1816 115 57 20 chr11 49426151 49426447 -99357025 + AluJb SINE Alu 1 307 -5 555 309 97 32 chr11 49427370 49427648 -99355824 + L2 LINE L2 2957 3252 -20 1333 144 8 37 chr11 49427670 49427913 -99355559 + AluJo SINE Alu 1 236 -76 251 136 0 0 chr11 49428521 49428565 -99354907 + L1MB7 LINE L1 5782 5825 -349 929 160 0 41 chr11 49428565 49428734 -99354738 + FRAM SINE Alu 1 161 -15 1314 140 109 101 chr11 49428735 49429092 -99354380 + L1MB7 LINE L1 5823 6182 -2 636 219 57 46 chr11 49429603 49429799 -99353673 - HAL1 LINE L1 0 2507 2315 2149 119 7 0 chr11 49429799 49430109 -99353363 - AluSx SINE Alu 0 312 1 636 219 57 46 chr11 49430109 49430266 -99353206 - HAL1 LINE L1 -192 2315 2121 1947 113 43 0 chr11 49430567 49430849 -99352623 + AluSx SINE Alu 1 294 -18 3212 153 41 38 chr11 49431212 49431488 -99351984 - L1MC1 LINE L1 -30 6303 6029 1900 153 0 10 chr11 49431488 49431795 -99351677 + AluJb SINE Alu 1 304 -8 3212 153 41 38 chr11 49431795 49432154 -99351318 - L1MC1 LINE L1 -304 6029 5666 1640 100 13 0 chr11 49432154 49432385 -99351087 - AluSg/x SINE Alu -10 300 67 1919 136 34 0 chr11 49432552 49432847 -99350625 - AluSx SINE Alu -4 308 4 1021 99 0 0 chr11 49433435 49433576 -99349896 - AluSg/x SINE Alu -4 308 168 406 207 0 0 chr11 49434072 49434154 -99349318 - L1P5 LINE L1 -594 5562 5481 2215 72 10 7 chr11 49434154 49434445 -99349027 - AluY SINE Alu -17 294 3 2274 85 0 0 chr11 49434447 49434740 -99348732 - AluSq SINE Alu -20 293 1 480 184 0 11 chr11 49434899 49434986 -99348486 - Charlie1 DNA MER1_type -2618 143 58 2458 44 0 31 chr11 49435165 49435486 -99347986 - AluY SINE Alu 0 311 1 441 291 6 6 chr11 49436591 49436773 -99346699 - L1M4 LINE L1 -3251 2895 2714 567 0 0 0 chr11 49437177 49437240 -99346232 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 1332 187 30 0 chr11 49437246 49437385 -99346087 - AluJb SINE Alu -37 275 142 1972 142 0 10 chr11 49437385 49437696 -99345776 - AluSx SINE Alu -4 308 1 1332 187 30 0 chr11 49437696 49437823 -99345649 - AluJb SINE Alu -170 142 1 350 204 299 12 chr11 49438092 49438259 -99345213 - Charlie8 DNA MER1_type -2174 243 29 3094 134 52 28 chr11 49439048 49439322 -99344150 + L1MB1 LINE L1 5572 5838 -330 2083 116 7 0 chr11 49439322 49439632 -99343840 - AluSx SINE Alu 0 312 1 3094 134 52 28 chr11 49439632 49439933 -99343539 + L1MB1 LINE L1 5838 6161 -7 2191 194 63 31 chr11 49440766 49441123 -99342349 - MER74B LTR ERVL -5 617 238 2184 98 3 0 chr11 49441123 49441430 -99342042 - AluSc SINE Alu -1 308 1 2191 194 63 31 chr11 49441430 49441583 -99341889 - MER74B LTR ERVL -384 238 91 2068 116 0 0 chr11 49442546 49442878 -99340594 + AluSx SINE Alu 1 332 0 1758 174 0 0 chr11 49442898 49443202 -99340270 + AluJb SINE Alu 1 304 -8 1228 239 46 0 chr11 49443596 49444024 -99339448 + L1MEc LINE L1 2103 2505 -3710 625 250 96 24 chr11 49444560 49444768 -99338704 + MIR SINE MIR 21 243 -19 25 0 0 0 chr11 49445071 49445096 -99338376 + AT_rich Low_complexity Low_complexity 1 25 0 358 292 71 18 chr11 49445424 49445537 -99337935 + L2 LINE L2 3147 3265 -7 788 183 0 22 chr11 49445682 49445819 -99337653 - AluJo SINE Alu -165 147 14 571 200 262 0 chr11 49446764 49446909 -99336563 + MER5A DNA MER1_type 7 189 0 911 192 19 112 chr11 49449244 49449504 -99333968 - MER106A DNA MER1_type 0 236 1 1707 177 0 3 chr11 49450721 49451021 -99332451 + AluJo SINE Alu 1 299 -13 1719 109 36 76 chr11 49451023 49451168 -99332304 + AluSx SINE Alu 1 129 -183 2110 107 0 20 chr11 49451168 49451468 -99332004 + AluSx SINE Alu 3 296 -16 1719 109 36 76 chr11 49451468 49451626 -99331846 + AluSx SINE Alu 129 292 -20 1917 120 4 4 chr11 49451628 49451903 -99331569 + AluSp SINE Alu 1 275 -38 210 44 44 22 chr11 49451912 49451957 -99331515 + (TAAAA)n Simple_repeat Simple_repeat 2 47 0 478 250 50 66 chr11 49451972 49452212 -99331260 + MLT1F LTR MaLR 5 244 -311 232 167 0 0 chr11 49452220 49452268 -99331204 + A-rich Low_complexity Low_complexity 6 53 0 370 218 49 92 chr11 49452373 49452515 -99330957 + MLT1F LTR MaLR 401 536 -13 1145 156 0 0 chr11 49452902 49453081 -99330391 + AluJo SINE Alu 1 179 -133 197 195 0 24 chr11 49453470 49453511 -99329961 + MIR3 SINE MIR 131 170 -38 234 0 0 0 chr11 49455021 49455047 -99328425 + (TG)n Simple_repeat Simple_repeat 2 27 0 368 274 207 28 chr11 49455410 49455589 -99327883 - MIR SINE MIR -24 238 28 836 241 38 9 chr11 49455662 49455874 -99327598 - MER20 DNA MER1_type -1 218 1 2104 95 3 0 chr11 49455934 49456240 -99327232 + AluSq SINE Alu 1 307 0 1832 96 103 0 chr11 49458243 49458514 -99324958 - AluSx SINE Alu -13 299 1 263 333 12 0 chr11 49458514 49458595 -99324877 - HAL1 LINE L1 -2425 82 1 219 319 42 0 chr11 49458749 49458821 -99324651 + L2 LINE L2 3239 3313 0 728 186 0 21 chr11 49458954 49459094 -99324378 + FLAM_C SINE Alu 7 143 0 338 217 29 0 chr11 49459112 49459185 -99324287 - FRAM SINE Alu -70 96 33 2267 68 0 52 chr11 49459210 49459535 -99323937 + AluY SINE Alu 1 308 -3 1959 134 3 0 chr11 49459555 49459853 -99323619 + AluSq SINE Alu 1 299 -14 832 87 0 0 chr11 49460440 49460555 -99322917 + AluY SINE Alu 192 306 -5 2354 81 0 0 chr11 49460556 49460866 -99322606 + AluY SINE Alu 2 311 0 2191 81 3 0 chr11 49462304 49462599 -99320873 - AluY SINE Alu -13 298 3 235 224 30 60 chr11 49462652 49462719 -99320753 + L2 LINE L2 3245 3309 -4 21 0 0 0 chr11 49462952 49462973 -99320499 + AT_rich Low_complexity Low_complexity 1 21 0 2147 91 3 0 chr11 49463052 49463339 -99320133 - AluSx SINE Alu -24 288 1 1371 69 0 0 chr11 49465997 49466172 -99317300 - AluSp SINE Alu 0 313 139 1891 162 3 0 chr11 49466273 49466576 -99316896 + AluJb SINE Alu 2 305 -7 1699 79 0 0 chr11 49466834 49467050 -99316422 + AluSg/x SINE Alu 65 280 -32 416 226 108 45 chr11 49467058 49467180 -99316292 + MLT1H LTR MaLR 236 349 -200 1433 217 89 52 chr11 49467180 49467663 -99315809 - MLT1D LTR MaLR -2 503 3 416 226 108 45 chr11 49467663 49467835 -99315637 + MLT1H LTR MaLR 349 549 0 1797 106 91 0 chr11 49468743 49469018 -99314454 - AluSp SINE Alu -13 300 1 277 77 0 58 chr11 49471491 49471543 -99311929 - L1MB2 LINE L1 -2 6169 6121 2010 133 3 0 chr11 49471550 49471875 -99311597 - AluSx SINE Alu 0 326 1 21 0 0 0 chr11 49471883 49471904 -99311568 + AT_rich Low_complexity Low_complexity 1 21 0 1891 132 6 31 chr11 49472296 49472614 -99310858 - AluSq SINE Alu -3 310 1 506 178 136 25 chr11 49472616 49472734 -99310738 - FLAM_A SINE Alu -1 132 2 855 183 0 18 chr11 49473294 49473463 -99310009 + FRAM SINE Alu 2 167 -9 1989 132 0 16 chr11 49474131 49474435 -99309037 - AluSx SINE Alu -13 299 1 207 314 0 14 chr11 49475478 49475548 -99307924 + CT-rich Low_complexity Low_complexity 2 70 0 396 138 75 12 chr11 49476625 49476705 -99306767 + L1MB3 LINE L1 5900 5984 -199 243 243 0 100 chr11 49476837 49476850 -99306622 + L2 LINE L2 3210 3223 -49 2127 99 0 7 chr11 49476850 49477153 -99306319 + AluSq SINE Alu 1 301 -12 243 243 0 100 chr11 49477153 49477209 -99306263 + L2 LINE L2 3223 3272 0 1781 161 0 3 chr11 49477321 49477613 -99305859 - AluJb SINE Alu -21 291 1 481 294 97 78 chr11 49478815 49479084 -99304388 - L2 LINE L2 0 3272 2999 314 251 179 65 chr11 49480776 49481041 -99302431 + L1ME3 LINE L1 5615 5929 -233 2300 71 0 7 chr11 49481049 49481345 -99302127 - AluY SINE Alu -16 295 2 739 194 0 0 chr11 49481528 49481657 -99301815 + FLAM_C SINE Alu 1 129 -4 1586 208 0 0 chr11 49481684 49481977 -99301495 + AluJb SINE Alu 1 293 -19 297 308 170 14 chr11 49483112 49483401 -99300071 + L2 LINE L2 2644 2977 -337 2110 112 0 7 chr11 49483483 49483777 -99299695 - AluSx SINE Alu -20 292 1 22 35 0 0 chr11 49485305 49485334 -99298138 + AT_rich Low_complexity Low_complexity 1 29 0 854 141 0 0 chr11 49485435 49485563 -99297909 + FLAM_C SINE Alu 4 131 -2 2122 104 0 7 chr11 49485636 49485934 -99297538 + AluSx SINE Alu 1 296 -16 2037 85 0 78 chr11 49485936 49486277 -99297195 + AluSg SINE Alu 1 310 0 2103 74 28 0 chr11 49488246 49488530 -99294942 - AluSg SINE Alu -14 296 5 763 75 0 19 chr11 49489857 49489963 -99293509 + AluSc SINE Alu 2 105 -204 1268 214 62 14 chr11 49490120 49490396 -99293076 + AluJo SINE Alu 2 290 -12 2167 109 3 0 chr11 49490409 49490712 -99292760 + AluSg SINE Alu 1 304 -6 369 0 0 0 chr11 49490865 49490906 -99292566 + (TG)n Simple_repeat Simple_repeat 2 42 0 2293 73 10 0 chr11 49491114 49491414 -99292058 + AluSq SINE Alu 1 303 -10 1461 78 0 5 chr11 49491419 49491611 -99291861 + AluY SINE Alu 1 191 -120 195 100 0 0 chr11 49491620 49491650 -99291822 + (A)n Simple_repeat Simple_repeat 1 30 0 301 242 189 0 chr11 49491922 49492017 -99291455 + L2 LINE L2 3196 3308 -5 198 0 0 0 chr11 49492871 49492893 -99290579 + (CAG)n Simple_repeat Simple_repeat 1 22 0 934 142 62 17 chr11 49493059 49493235 -99290237 - MER5A DNA MER1_type -5 184 1 2268 85 0 0 chr11 49493281 49493586 -99289886 + AluSx SINE Alu 1 305 -7 222 241 17 17 chr11 49493717 49493775 -99289697 + GA-rich Low_complexity Low_complexity 6 63 0 201 74 0 0 chr11 49494128 49494155 -99289317 + (TTC)n Simple_repeat Simple_repeat 2 28 0 374 247 89 62 chr11 49495798 49495944 -99287528 - MER5A DNA MER1_type -39 150 1 27 0 0 0 chr11 49497433 49497460 -99286012 + AT_rich Low_complexity Low_complexity 1 27 0 428 357 83 0 chr11 49497470 49497627 -99285845 - L2 LINE L2 -1 3271 3102 267 279 35 12 chr11 49499155 49499241 -99284231 + MIR SINE MIR 160 247 -15 2317 93 3 0 chr11 49499241 49499553 -99283919 + AluSp SINE Alu 1 313 0 207 0 0 0 chr11 49499805 49499828 -99283644 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 482 199 145 15 chr11 49499866 49499997 -99283475 - L1ME LINE L1 -409 5712 5565 264 329 44 22 chr11 49500849 49500986 -99282486 + L3 LINE CR1 382 521 -1056 1301 101 0 0 chr11 49500991 49501159 -99282313 - AluSx SINE Alu -144 168 1 199 231 0 0 chr11 49501977 49502016 -99281456 - L2 LINE L2 -16 3256 3218 2206 107 0 0 chr11 49502902 49503212 -99280260 + AluY SINE Alu 1 310 -1 341 315 129 4 chr11 49505002 49505234 -99278238 - MIR SINE MIR 0 262 2 1278 88 0 0 chr11 49506019 49506179 -99277293 - AluSx SINE Alu -152 160 1 975 93 0 43 chr11 49506197 49506336 -99277136 - FLAM_C SINE Alu 0 133 1 1004 144 150 0 chr11 49506539 49506719 -99276753 + MER2 DNA MER2_type 1 207 -138 1621 148 4 25 chr11 49506721 49506998 -99276474 - AluJb SINE Alu -39 273 3 2246 112 0 0 chr11 49507889 49508201 -99275271 - AluSq SINE Alu -1 312 1 2088 111 3 7 chr11 49511463 49511761 -99271711 - AluSc SINE Alu -12 297 1 1826 135 81 0 chr11 49511917 49512250 -99271222 + MER6 DNA MER2_type 472 831 -34 809 150 59 33 chr11 49512406 49512559 -99270913 - AluSc SINE Alu 0 309 153 2353 81 0 3 chr11 49513111 49513418 -99270054 + AluY SINE Alu 1 306 -5 3227 158 64 7 chr11 49513419 49513982 -99269490 - Tigger1 DNA MER2_type -1823 595 1 828 165 0 8 chr11 49514196 49514329 -99269143 - FLAM_C SINE Alu -11 132 1 270 367 0 0 chr11 49515999 49516127 -99267345 + G-rich Low_complexity Low_complexity 3 130 0 2152 91 0 38 chr11 49517214 49517532 -99265940 + AluY SINE Alu 1 306 -5 2419 57 0 0 chr11 49517532 49517831 -99265641 + AluY SINE Alu 1 299 -12 231 247 99 12 chr11 49519083 49519164 -99264308 - MIR3 SINE MIR -15 193 106 545 287 76 14 chr11 49519764 49520039 -99263433 + L1MC4a LINE L1 5615 5906 -1902 2308 101 0 3 chr11 49520586 49520882 -99262590 - AluSx SINE Alu -17 295 1 30 45 0 0 chr11 49522031 49522075 -99261397 + AT_rich Low_complexity Low_complexity 1 44 0 353 300 94 34 chr11 49522163 49522396 -99261076 - MIR SINE MIR -14 248 2 238 221 74 53 chr11 49522506 49522601 -99260871 + MIR SINE MIR 154 250 -12 2222 117 0 0 chr11 49522608 49522907 -99260565 - AluSx SINE Alu -12 300 2 263 284 28 57 chr11 49523576 49523717 -99259755 + L2 LINE L2 3175 3311 -2 462 245 80 24 chr11 49627773 49627973 -99155499 - L1MC4a LINE L1 -170 5951 5728 983 163 5 43 chr11 49627974 49628158 -99155314 - AluJb SINE Alu -14 298 122 2281 110 3 3 chr11 49628184 49628493 -99154979 + AluSx SINE Alu 1 309 -3 1732 98 0 30 chr11 49628494 49628730 -99154742 + AluSq SINE Alu 1 229 -84 1525 98 5 19 chr11 49628830 49629045 -99154427 + AluSg/x SINE Alu 91 302 -8 571 233 96 65 chr11 49629080 49629372 -99154100 + L2 LINE L2 3012 3312 -1 1797 165 3 10 chr11 49629430 49629739 -99153733 + AluJb SINE Alu 1 307 -5 500 228 23 58 chr11 49630425 49630489 -99152983 - MIR SINE MIR -54 208 143 577 103 0 0 chr11 49630489 49630567 -99152905 + MADE1 DNA Mariner 3 80 0 500 228 23 58 chr11 49630567 49630673 -99152799 - MIR SINE MIR -119 143 44 187 278 97 0 chr11 49631103 49631175 -99152297 - MIR SINE MIR -164 98 20 196 273 18 18 chr11 49631188 49631243 -99152229 + MER5A DNA MER1_type 122 176 -13 2832 22 3 0 chr11 49631471 49631783 -99151689 + AluYb8 SINE Alu 1 313 -5 932 180 97 158 chr11 49631883 49632460 -99151012 + HAL1 LINE L1 1862 2403 -104 1957 116 18 0 chr11 49633102 49633377 -99150095 - AluSx SINE Alu -32 280 1 2095 112 25 6 chr11 49633543 49633865 -99149607 - L1MC2 LINE L1 -238 6106 5779 1947 174 3 0 chr11 49633877 49634188 -99149284 - AluJb SINE Alu 0 312 1 2469 72 7 0 chr11 49634194 49634500 -99148972 - AluSp SINE Alu -5 308 1 34 0 0 0 chr11 49634547 49634581 -99148891 + AT_rich Low_complexity Low_complexity 1 34 0 738 190 0 0 chr11 49634619 49634740 -99148732 + FLAM_C SINE Alu 1 121 -12 429 20 0 0 chr11 49634743 49634793 -99148679 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 2056 143 0 6 chr11 49634970 49635284 -99148188 - AluSx SINE Alu 0 312 1 1259 241 133 27 chr11 49635297 49635741 -99147731 - L1MC4a LINE L1 -1965 5843 5353 240 167 0 0 chr11 49635747 49635795 -99147677 + (TA)n Simple_repeat Simple_repeat 1 48 0 533 272 43 37 chr11 49636826 49637042 -99146430 - MIR SINE MIR -10 252 36 244 220 20 0 chr11 49637144 49637194 -99146278 + (CA)n Simple_repeat Simple_repeat 1 51 0 622 50 0 0 chr11 49637194 49637294 -99146178 - AluY SINE Alu 0 302 203 1344 96 51 0 chr11 49637420 49637617 -99145855 + AluY SINE Alu 105 311 0 1486 142 0 45 chr11 49637812 49638059 -99145413 - AluJo SINE Alu -19 293 58 462 237 227 16 chr11 49638112 49638433 -99145039 - L1ME4a LINE L1 -3 6118 5730 779 135 0 0 chr11 49638433 49638544 -99144928 - AluJb SINE Alu -12 300 190 922 159 0 0 chr11 49638544 49638682 -99144790 - AluSg/x SINE Alu -90 220 83 215 291 128 27 chr11 49638808 49638956 -99144516 - MIR SINE MIR -27 235 73 525 56 0 0 chr11 49639348 49639420 -99144052 + Alu SINE Alu 239 310 -2 5379 143 34 34 chr11 49639449 49639758 -99143714 + L1PA16 LINE L1 5020 5328 -838 2039 117 33 0 chr11 49639758 49640057 -99143415 + AluSx SINE Alu 1 308 0 5379 143 34 34 chr11 49640057 49640740 -99142732 + L1PA16 LINE L1 5328 6014 -152 2249 148 40 66 chr11 49640740 49641241 -99142231 + LTR22B LTR ERVK 1 488 -4 5379 143 34 34 chr11 49641241 49641392 -99142080 + L1PA16 LINE L1 6014 6164 -2 596 221 39 74 chr11 49641392 49641650 -99141822 + L2 LINE L2 3065 3313 0 275 368 6 12 chr11 49642040 49642203 -99141269 + L2 LINE L2 2228 2389 -925 2167 107 10 3 chr11 49642364 49642654 -99140818 + AluSg SINE Alu 1 292 -18 687 274 75 9 chr11 49642667 49642893 -99140579 - MIR SINE MIR -15 247 7 1326 109 90 0 chr11 49642939 49643150 -99140322 + MER30 DNA MER1_type 1 230 0 547 200 0 20 chr11 49644236 49644336 -99139136 + FLAM_A SINE Alu 26 123 -19 2205 136 0 0 chr11 49644343 49644644 -99138828 + AluSx SINE Alu 1 301 -11 980 294 45 38 chr11 49644751 49645169 -99138303 + HAL1 LINE L1 146 566 -1941 2358 158 61 33 chr11 49645444 49645873 -99137599 + MLT2B2 LTR ERVL 13 453 -62 2043 104 44 120 chr11 49645878 49645899 -99137573 - Tigger2a DNA MER2_type -2308 400 379 767 187 0 8 chr11 49645899 49646033 -99137439 + FLAM_C SINE Alu 1 133 0 2043 104 44 120 chr11 49646033 49646211 -99137261 - Tigger2a DNA MER2_type -2329 379 249 673 183 8 8 chr11 49646211 49646331 -99137141 + FLAM_A SINE Alu 1 120 -13 2043 104 44 120 chr11 49646331 49646563 -99136909 - Tigger2a DNA MER2_type -2459 249 1 331 125 0 94 chr11 49646576 49646640 -99136832 + MLT2B2 LTR ERVL 463 520 0 586 228 118 0 chr11 49646655 49647017 -99136455 + HAL1 LINE L1 1098 1573 -934 274 172 148 41 chr11 49647449 49647571 -99135901 - L1ME4a LINE L1 0 6121 5987 329 303 0 84 chr11 49648077 49648232 -99135240 + MIR3 SINE MIR 9 150 -58 2191 65 0 0 chr11 49648244 49648507 -99134965 - AluSg SINE Alu -2 308 46 1986 68 0 72 chr11 49649388 49649680 -99133792 + AluSx SINE Alu 3 273 -39 2292 112 0 0 chr11 49649939 49650235 -99133237 - AluSx SINE Alu -16 296 1 314 244 143 42 chr11 49650246 49650365 -99133107 - MIR3 SINE MIR -67 141 11 878 145 56 137 chr11 49650464 49650539 -99132933 - MER20 DNA MER1_type 0 219 139 2272 81 0 3 chr11 49650539 49650823 -99132649 - AluSq SINE Alu -13 300 18 878 145 56 137 chr11 49650823 49650981 -99132491 - MER20 DNA MER1_type -80 139 5 1908 158 0 22 chr11 49651407 49651723 -99131749 - AluJb SINE Alu -3 309 1 423 83 0 0 chr11 49651873 49651933 -99131539 + (TCCA)n Simple_repeat Simple_repeat 4 63 0 1871 169 3 25 chr11 49652879 49653198 -99130274 - AluJo SINE Alu 0 312 1 292 277 125 9 chr11 49654135 49654247 -99129225 - MIR SINE MIR -91 171 47 2012 131 0 30 chr11 49654490 49654795 -99128677 + AluSx SINE Alu 1 296 -16 1935 117 13 73 chr11 49654795 49655111 -99128361 + AluSx SINE Alu 1 297 -15 1865 135 51 0 chr11 49657100 49657374 -99126098 + AluSx SINE Alu 1 288 -24 695 94 0 40 chr11 49657382 49657531 -99125941 + SVA Other Other 610 752 -634 4658 169 26 31 chr11 49657745 49658013 -99125459 - L1MB7 LINE L1 -77 6107 5839 2284 78 34 3 chr11 49658013 49658306 -99125166 + AluSq SINE Alu 2 303 -10 4658 169 26 31 chr11 49658306 49659278 -99124194 - L1MB7 LINE L1 -345 5839 4863 2897 78 14 3 chr11 49659278 49659649 -99123823 - THE1C LTR MaLR 0 375 1 4658 169 26 31 chr11 49659649 49660187 -99123285 - L1MB7 LINE L1 -1321 4863 4324 1254 171 5 9 chr11 49660188 49660399 -99123073 + AluJb SINE Alu 85 294 -18 1640 214 21 51 chr11 49660399 49660829 -99122643 - L1MB7 LINE L1 -1837 4309 3893 1753 124 8 12 chr11 49660976 49661234 -99122238 + AluSx SINE Alu 42 298 -14 28 29 0 0 chr11 49661383 49661418 -99122054 + AT_rich Low_complexity Low_complexity 1 35 0 2528 58 0 0 chr11 49661723 49662018 -99121454 - AluY SINE Alu -16 295 1 481 159 57 0 chr11 49662080 49662168 -99121304 - Charlie1 DNA MER1_type -6 2755 2663 1838 149 0 3 chr11 49662170 49662458 -99121014 - LOR1a LTR ERV1 0 497 211 670 92 0 0 chr11 49662462 49662549 -99120923 - LOR1b LTR ERV1 -374 87 1 249 191 90 22 chr11 49662565 49662654 -99120818 - Charlie1 DNA MER1_type -102 2659 2565 2267 109 3 0 chr11 49662654 49662957 -99120515 - AluSx SINE Alu -8 304 1 207 88 0 0 chr11 49663099 49663133 -99120339 + (A)n Simple_repeat Simple_repeat 1 34 0 266 261 39 62 chr11 49663663 49663793 -99119679 + HAL1 LINE L1 2354 2480 -27 2009 158 0 0 chr11 49663891 49664214 -99119258 - AluSx SINE Alu 0 312 1 324 321 75 14 chr11 49664399 49664611 -99118861 + L2 LINE L2 1234 1458 -1856 404 290 117 39 chr11 49664984 49665419 -99118053 + L2 LINE L2 1545 2013 -1301 449 294 93 58 chr11 49666033 49666376 -99117096 + MLT1J1 LTR MaLR 43 397 -49 1941 145 42 0 chr11 49666896 49667185 -99116287 + AluJo SINE Alu 1 301 -11 349 307 102 18 chr11 49667306 49667472 -99116000 + MIR SINE MIR 13 192 -70 2251 99 0 52 chr11 49667554 49667878 -99115594 + AluSg SINE Alu 1 307 -3 2725 42 0 0 chr11 49668008 49668315 -99115157 + AluY SINE Alu 1 307 -4 2263 106 0 16 chr11 49668508 49668811 -99114661 + AluSx SINE Alu 1 298 -14 245 195 0 0 chr11 49668949 49668990 -99114482 + L1ME LINE L1 5712 5752 -414 388 183 11 0 chr11 49669119 49669197 -99114275 + L1M3 LINE L1 5537 5603 -577 243 242 15 15 chr11 49669796 49669862 -99113610 - MIR3 SINE MIR -132 76 11 27 29 0 0 chr11 49670205 49670239 -99113233 + AT_rich Low_complexity Low_complexity 1 34 0 1044 171 43 0 chr11 49671883 49672094 -99111378 + AluJo SINE Alu 84 303 -9 287 392 108 8 chr11 49672898 49673018 -99110454 + L2 LINE L2 3128 3259 -13 1334 122 44 81 chr11 49673199 49673494 -99109978 + L1MB2 LINE L1 5887 6170 -1 1373 131 0 10 chr11 49673581 49673780 -99109692 + Tigger2a DNA MER2_type 1 197 -237 740 185 64 19 chr11 49673821 49673978 -99109494 + AluJb SINE Alu 110 273 -39 1313 136 89 0 chr11 49673978 49674213 -99109259 + Tigger2a DNA MER2_type 189 444 0 312 27 0 0 chr11 49674287 49674324 -99109148 + (TG)n Simple_repeat Simple_repeat 2 38 0 1851 211 42 34 chr11 49674355 49674600 -99108872 + MLT1D LTR MaLR 5 247 -258 2393 69 0 0 chr11 49674600 49674904 -99108568 + AluY SINE Alu 1 304 -7 1851 211 42 34 chr11 49674904 49675155 -99108317 + MLT1D LTR MaLR 247 505 0 2169 74 3 10 chr11 49675221 49675518 -99107954 + AluY SINE Alu 1 295 -16 32 75 0 0 chr11 49675643 49675710 -99107762 + AT_rich Low_complexity Low_complexity 1 67 0 1549 194 0 10 chr11 49675967 49676271 -99107201 - AluJb SINE Alu -11 301 1 1684 171 17 0 chr11 49676301 49676600 -99106872 - AluJb SINE Alu -8 304 1 210 286 0 0 chr11 49676916 49676972 -99106500 + MIR SINE MIR 28 83 -179 737 198 87 0 chr11 49677026 49677198 -99106274 - MIR SINE MIR -5 257 71 870 217 0 0 chr11 49677249 49677410 -99106062 + AluJb SINE Alu 135 295 -17 230 289 48 102 chr11 49677502 49677668 -99105804 - L2 LINE L2 -169 3144 2988 2234 68 7 0 chr11 49677923 49678216 -99105256 - AluY SINE Alu -16 295 1 265 100 40 0 chr11 49678276 49678326 -99105146 + (TTA)n Simple_repeat Simple_repeat 2 53 0 182 283 0 19 chr11 49680046 49680099 -99103373 + L2 LINE L2 3217 3268 -4 446 253 201 41 chr11 49680147 49680341 -99103131 - L2 LINE L2 -3 3310 3086 2375 56 0 7 chr11 49680367 49680673 -99102799 - AluY SINE Alu -7 304 1 236 319 58 36 chr11 49680981 49681119 -99102353 - LTR67 LTR ERVL -67 490 350 214 250 0 21 chr11 49681331 49681379 -99102093 + polypurine Low_complexity Low_complexity 2 48 0 2154 117 0 0 chr11 49681406 49681714 -99101758 - AluSx SINE Alu -4 308 1 665 263 110 70 chr11 49682149 49682594 -99100878 - LTR16B LTR ERVL 0 464 2 488 242 139 30 chr11 49682634 49682710 -99100762 - MIR SINE MIR -2 260 194 2153 113 0 0 chr11 49682710 49683011 -99100461 - AluSx SINE Alu -11 301 1 1610 151 14 18 chr11 49683011 49683296 -99100176 - AluJo SINE Alu -18 294 11 488 242 139 30 chr11 49683296 49683383 -99100089 - MIR SINE MIR -67 195 78 645 277 183 0 chr11 49683645 49683858 -99099614 + MIR SINE MIR 5 256 -6 634 221 67 127 chr11 49684141 49684394 -99099078 + MIR SINE MIR 20 257 -5 2287 96 0 0 chr11 49685407 49685709 -99097763 + AluSx SINE Alu 1 302 -10 1285 101 101 5 chr11 49686213 49686412 -99097060 + AluSg/x SINE Alu 85 302 -10 642 250 65 43 chr11 49686424 49686519 -99096953 - L2 LINE L2 -498 2816 2725 1624 158 25 62 chr11 49686519 49686841 -99096631 - AluJb SINE Alu -2 310 1 642 250 65 43 chr11 49686841 49686929 -99096543 - L2 LINE L2 -589 2725 2629 2302 92 0 0 chr11 49687241 49687545 -99095927 + AluSc SINE Alu 1 304 -5 473 286 107 122 chr11 49687694 49688079 -99095393 + L2 LINE L2 2894 3272 0 1496 110 37 123 chr11 49688166 49688492 -99094980 + AluSg SINE Alu 1 298 -12 210 37 0 0 chr11 49688495 49688522 -99094950 + (CAA)n Simple_repeat Simple_repeat 2 28 0 682 132 7 132 chr11 49688615 49688767 -99094705 - MER20 DNA MER1_type -4 215 83 968 205 12 0 chr11 49688773 49688939 -99094533 + FAM SINE Alu 1 168 -7 1986 140 0 7 chr11 49688939 49689272 -99094200 + AluSx SINE Alu 7 312 0 324 158 0 0 chr11 49689272 49689329 -99094143 + GA-rich Low_complexity Low_complexity 1 57 0 2202 64 20 17 chr11 49690306 49690604 -99092868 + AluSp SINE Alu 1 299 -14 1658 117 0 0 chr11 49692182 49692412 -99091060 - AluSx SINE Alu -29 283 54 813 211 0 0 chr11 49692666 49692822 -99090650 - FAM SINE Alu -14 171 16 2854 61 0 3 chr11 49693168 49693511 -99089961 + THE1A LTR MaLR 14 355 0 12337 81 6 2 chr11 49693511 49695086 -99088386 + THE1A-int LTR MaLR 1 1580 0 2783 71 6 0 chr11 49695086 49695439 -99088033 + THE1A LTR MaLR 1 355 0 277 307 74 81 chr11 49695466 49695671 -99087801 - L2 LINE L2 -52 3261 3015 1903 146 3 0 chr11 49695671 49695973 -99087499 - AluJb SINE Alu -9 303 1 277 307 74 81 chr11 49695973 49696114 -99087358 - L2 LINE L2 -298 3015 2874 750 171 0 16 chr11 49696249 49696378 -99087094 - FLAM_C SINE Alu -10 133 7 187 416 0 26 chr11 49696394 49696507 -99086965 - L2 LINE L2 -575 2739 2630 1622 155 3 74 chr11 49696660 49696970 -99086502 - AluJo SINE Alu -19 293 6 2371 80 0 0 chr11 49696982 49697282 -99086190 - AluSx SINE Alu -12 300 1 750 150 175 25 chr11 49697397 49697557 -99085915 - AluJb SINE Alu 0 312 129 389 325 51 0 chr11 49697660 49697777 -99085695 - L2 LINE L2 -4 3268 3146 2067 88 7 0 chr11 49697821 49698144 -99085328 + AluSx SINE Alu 1 325 0 1467 181 53 0 chr11 49698889 49699154 -99084318 + AluJo SINE Alu 1 279 -33 194 0 39 0 chr11 49699169 49699195 -99084277 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1991 145 0 0 chr11 49699196 49699499 -99083973 + AluSx SINE Alu 6 308 -4 2245 67 3 10 chr11 49700547 49700847 -99082625 - AluSc SINE Alu -11 298 1 551 96 0 0 chr11 49700969 49701042 -99082430 + MER5A DNA MER1_type 32 104 -85 1401 193 10 46 chr11 49701042 49701347 -99082125 + AluJo SINE Alu 1 294 -18 209 103 0 0 chr11 49701351 49701380 -99082092 + MER5A DNA MER1_type 89 117 -72 2233 81 0 23 chr11 49701404 49701577 -99081895 - AluSg SINE Alu -10 300 136 2476 52 0 3 chr11 49701577 49701884 -99081588 - AluY SINE Alu -5 306 1 2233 81 0 23 chr11 49701884 49702017 -99081455 - AluSg SINE Alu -174 136 1 457 202 36 0 chr11 49702036 49702120 -99081352 + MER5A DNA MER1_type 103 189 0 3648 100 12 8 chr11 49702613 49703122 -99080350 - MER9 LTR ERVK 0 511 1 296 293 71 0 chr11 49703244 49703343 -99080129 - L1ME4a LINE L1 -74 6047 5942 1878 151 0 16 chr11 49703452 49703769 -99079703 - AluJo SINE Alu 0 312 1 1723 169 36 0 chr11 49703833 49704134 -99079338 - AluJb SINE Alu 0 312 1 1214 184 85 97 chr11 49704983 49705257 -99078215 - L1MC4 LINE L1 0 8042 7773 1349 160 104 21 chr11 49705257 49705545 -99077927 - AluJo SINE Alu 0 312 1 1214 184 85 97 chr11 49705545 49705695 -99077777 - L1MC4 LINE L1 -269 7773 7623 1064 174 57 114 chr11 49705698 49706014 -99077458 - AluJo SINE Alu -8 304 7 508 164 129 9 chr11 49706020 49706136 -99077336 - FLAM_A SINE Alu 0 133 4 1422 197 49 49 chr11 49706146 49706209 -99077263 - L1MC4 LINE L1 -412 7630 7568 1966 103 0 4 chr11 49706209 49706482 -99076990 - AluSx SINE Alu -6 306 35 1422 197 49 49 chr11 49706482 49706788 -99076684 - L1MC4 LINE L1 -473 7569 7261 260 283 151 36 chr11 49706816 49706982 -99076490 - MIR SINE MIR -77 185 1 410 290 10 0 chr11 49707636 49707736 -99075736 - MER91B DNA MER1_type 0 190 90 265 176 30 176 chr11 49707754 49707765 -99075707 - MER91B DNA MER1_type -61 129 118 2241 94 20 0 chr11 49707765 49708064 -99075408 + AluSx SINE Alu 1 305 -7 265 176 30 176 chr11 49708064 49708183 -99075289 - MER91B DNA MER1_type -72 118 18 533 284 96 64 chr11 49708460 49708571 -99074901 - MIR SINE MIR -30 232 126 1854 135 3 7 chr11 49708571 49708860 -99074612 + AluJb SINE Alu 1 288 -24 533 284 96 64 chr11 49708860 49708966 -99074506 - MIR SINE MIR -136 126 8 598 333 51 14 chr11 49710029 49710245 -99073227 + MIR SINE MIR 1 224 -38 820 143 0 0 chr11 49712234 49712353 -99071119 + FLAM_C SINE Alu 1 119 -24 272 278 204 28 chr11 49712556 49712664 -99070808 - L2 LINE L2 -1 3271 3145 1849 153 0 0 chr11 49713584 49713878 -99069594 - AluJo SINE Alu -18 294 1 2143 94 7 0 chr11 49714066 49714364 -99069108 - AluSx SINE Alu -12 300 1 393 241 74 68 chr11 49715032 49715194 -99068278 - MER5A DNA MER1_type -1 188 26 481 269 188 32 chr11 49715305 49715491 -99067981 + MIR SINE MIR 38 252 -10 1479 178 19 7 chr11 49715618 49715888 -99067584 + AluJo SINE Alu 1 273 -39 225 274 0 0 chr11 49715910 49715961 -99067511 + GA-rich Low_complexity Low_complexity 2 52 0 1089 149 0 0 chr11 49716041 49716216 -99067256 - AluSg/x SINE Alu 0 312 138 2238 86 7 0 chr11 49716220 49716511 -99066961 - AluSg SINE Alu -16 294 2 209 167 24 24 chr11 49717995 49718037 -99065435 - MIR SINE MIR -142 66 25 2166 86 3 13 chr11 49718637 49718963 -99064509 + AluSp SINE Alu 1 313 0 349 280 93 20 chr11 49720845 49720995 -99062477 - MIR SINE MIR -58 204 44 266 272 215 31 chr11 49721431 49721626 -99061846 - MIR SINE MIR -19 243 13 460 239 52 65 chr11 49721862 49721931 -99061541 - MIR SINE MIR -82 180 112 1798 140 0 69 chr11 49721931 49722266 -99061206 - AluSx SINE Alu 0 312 1 460 239 52 65 chr11 49722266 49722351 -99061121 - MIR SINE MIR -150 112 28 2002 218 112 28 chr11 49722353 49722898 -99060574 - MLT1E LTR MaLR 0 593 3 782 178 72 108 chr11 49723748 49724080 -99059392 + L1MC3 LINE L1 6778 7097 -688 232 261 11 57 chr11 49724080 49724168 -99059304 + MLT1F1 LTR MaLR 35 118 -449 1818 207 150 17 chr11 49724169 49724696 -99058776 + L1MD3 LINE L1 7399 7995 0 802 180 0 8 chr11 49724777 49724905 -99058567 + FLAM_C SINE Alu 1 127 -16 1317 150 9 4 chr11 49724923 49725150 -99058322 + L1MC3 LINE L1 5446 5673 -2112 259 224 0 17 chr11 49725151 49725209 -99058263 + AluJ/FLAM SINE Alu 2 58 -244 6268 140 54 64 chr11 49725213 49726567 -99056905 + L1MC3 LINE L1 6106 7445 -340 22 0 0 0 chr11 49726569 49726591 -99056881 + AT_rich Low_complexity Low_complexity 1 22 0 774 185 8 0 chr11 49726703 49726833 -99056639 + FLAM_C SINE Alu 2 132 -1 1820 142 6 63 chr11 49726837 49727168 -99056304 + AluJb SINE Alu 1 312 0 29 28 0 0 chr11 49727192 49727228 -99056244 + AT_rich Low_complexity Low_complexity 1 36 0 494 285 137 55 chr11 49727313 49727730 -99055742 - L2 LINE L2 -5 3308 2858 595 241 75 66 chr11 49728040 49728204 -99055268 + MIR SINE MIR 3 171 -91 1734 167 46 0 chr11 49728204 49728478 -99054994 + AluJb SINE Alu 1 290 -22 198 0 0 0 chr11 49728478 49728500 -99054972 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 595 241 75 66 chr11 49728506 49728569 -99054903 + MIR SINE MIR 171 232 -30 436 238 8 40 chr11 49728644 49728770 -99054702 + L2 LINE L2 3192 3313 0 2196 153 73 71 chr11 49728968 49729333 -99054139 + MER21B LTR ERV1 338 706 -157 2207 98 10 3 chr11 49729333 49729629 -99053843 + AluSq SINE Alu 1 298 -15 2196 153 73 71 chr11 49729629 49729768 -99053704 + MER21B LTR ERV1 706 843 -20 2995 162 30 25 chr11 49729799 49730065 -99053407 + MER21B-int LTR ERV1 1 264 -3927 2113 113 10 10 chr11 49730065 49730365 -99053107 + AluSc SINE Alu 1 300 -9 2995 162 30 25 chr11 49730365 49730666 -99052806 + MER21B-int LTR ERV1 264 571 -3620 1549 156 85 46 chr11 49730662 49731028 -99052444 + MER21-int LTR ERV1 3816 4195 -2563 * 2742 39 0 0 chr11 49731032 49731341 -99052131 + AluY SINE Alu 1 309 -2 724 161 0 0 chr11 49731348 49731460 -99052012 + FLAM_C SINE Alu 1 112 -31 1159 225 51 0 chr11 49731460 49731713 -99051759 + MER21-int LTR ERV1 1372 1637 -2554 1933 150 7 0 chr11 49731795 49732095 -99051377 + AluJb SINE Alu 1 302 -10 490 204 190 21 chr11 49732100 49732242 -99051230 + MER21-int LTR ERV1 1638 1803 -2388 2246 127 0 3 chr11 49732285 49732593 -99050879 + AluSx SINE Alu 1 307 -5 425 153 31 31 chr11 49732663 49732761 -99050711 + MER21A LTR ERV1 481 578 -353 212 0 36 0 chr11 49732762 49732790 -99050682 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1997 89 0 50 chr11 49732989 49733269 -99050203 - AluSg SINE Alu -13 297 32 217 270 155 90 chr11 49735044 49735244 -99048228 + MIR SINE MIR 34 246 -16 199 256 77 39 chr11 49735244 49735322 -99048150 + MIR3 SINE MIR 125 205 -3 753 191 0 29 chr11 49735656 49735792 -99047680 + AluJo SINE Alu 2 133 -179 425 295 74 5 chr11 49735796 49735986 -99047486 + L1MC/D LINE L1 5508 5710 -2098 1365 61 12 0 chr11 49735987 49736151 -99047321 - AluSg/x SINE Alu -11 299 134 1235 123 12 0 chr11 49736299 49736470 -99047002 + AluJo SINE Alu 132 304 -8 26 30 0 0 chr11 49736761 49736794 -99046678 + AT_rich Low_complexity Low_complexity 1 33 0 332 257 71 35 chr11 49737275 49737388 -99046084 + L2 LINE L2 3152 3268 -4 2367 109 3 0 chr11 49737730 49738041 -99045431 - AluSx SINE Alu 0 312 1 543 291 24 38 chr11 49738239 49738452 -99045020 - MIR SINE MIR -4 258 49 294 322 18 2 chr11 49741352 49741520 -99041952 + MER117 DNA MER1_type 2 197 0 280 217 48 36 chr11 49741588 49741671 -99041801 + MIR SINE MIR 16 99 -109 279 0 0 0 chr11 49741927 49741958 -99041514 + (TTCA)n Simple_repeat Simple_repeat 4 34 0 1772 166 3 38 chr11 49742324 49742638 -99040834 + AluJo SINE Alu 1 303 -9 315 0 0 0 chr11 49742948 49742987 -99040485 - AluY SINE Alu -24 278 240 1462 71 65 0 chr11 49742988 49743172 -99040300 - AluY SINE Alu -115 196 1 229 205 0 0 chr11 49744376 49744415 -99039057 - L2 LINE L2 -14 3299 3261 545 235 150 34 chr11 49744424 49744677 -99038795 + L2 LINE L2 2795 3064 -249 2287 108 0 7 chr11 49744688 49744995 -99038477 - AluSx SINE Alu -7 305 1 27 73 0 0 chr11 49745265 49745320 -99038152 + GC_rich Low_complexity Low_complexity 1 55 0 2012 157 0 3 chr11 49747244 49747549 -99035923 - AluJb SINE Alu -8 304 1 1790 157 0 0 chr11 49747897 49748158 -99035314 + AluSx SINE Alu 36 296 -16 366 250 61 132 chr11 49749410 49749638 -99033834 + MIR SINE MIR 47 258 -4 568 207 101 87 chr11 49751432 49751552 -99031920 - MIR SINE MIR -10 252 126 2112 121 3 38 chr11 49751552 49751867 -99031605 + AluSx SINE Alu 1 304 -8 568 207 101 87 chr11 49751867 49751954 -99031518 - MIR SINE MIR -136 126 42 761 128 0 0 chr11 49752087 49752204 -99031268 - FRAM SINE Alu 0 176 60 390 273 0 0 chr11 49752549 49752637 -99030835 - MIR SINE MIR -55 207 120 2047 150 0 7 chr11 49752731 49753025 -99030447 + AluSx SINE Alu 2 293 -19 844 243 35 12 chr11 49753248 49753503 -99029969 - MIR SINE MIR 0 262 2 216 0 0 0 chr11 49753950 49753974 -99029498 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 583 257 148 5 chr11 49754324 49754526 -99028946 - MIR SINE MIR -19 243 13 2008 155 0 43 chr11 49754771 49754907 -99028565 + AluJb SINE Alu 1 141 -171 2228 135 0 0 chr11 49754907 49755210 -99028262 + AluSg SINE Alu 3 305 -5 2008 155 0 43 chr11 49755210 49755396 -99028076 + AluJb SINE Alu 141 309 -3 1645 121 0 0 chr11 49755396 49755611 -99027861 + AluSg SINE Alu 1 215 -95 2306 102 20 0 chr11 49755627 49755931 -99027541 + AluSp SINE Alu 2 311 -2 334 241 28 56 chr11 49756975 49757083 -99026389 + L2 LINE L2 3160 3264 -8 1438 201 70 4 chr11 49757975 49758248 -99025224 - AluJo SINE Alu -21 291 1 324 306 58 25 chr11 49758295 49758416 -99025056 - L2 LINE L2 0 3313 3189 2284 106 23 0 chr11 49758465 49758768 -99024704 - AluSq SINE Alu -3 310 1 495 33 0 0 chr11 49758783 49758844 -99024628 + (CA)n Simple_repeat Simple_repeat 2 62 0 1932 164 14 0 chr11 49758984 49759270 -99024202 - AluJo SINE Alu -22 290 1 1803 173 0 16 chr11 49759281 49759587 -99023885 - AluJb SINE Alu -11 301 1 635 240 51 20 chr11 49759721 49759917 -99023555 - MIR SINE MIR -44 218 17 2318 100 7 0 chr11 49759924 49760224 -99023248 - AluSx SINE Alu -10 302 1 568 262 64 12 chr11 49760545 49760717 -99022755 - MIR SINE MIR 0 262 82 2171 128 0 0 chr11 49760952 49761248 -99022224 - AluSq SINE Alu -11 302 7 2441 72 31 0 chr11 49761256 49761546 -99021926 - AluSp SINE Alu -14 299 1 198 71 0 0 chr11 49762337 49762365 -99021107 + (CACCC)n Simple_repeat Simple_repeat 5 32 0 1373 85 0 0 chr11 49762789 49762965 -99020507 + AluSg/x SINE Alu 137 312 0 900 231 101 5 chr11 49762967 49763175 -99020297 + MIR SINE MIR 13 240 -22 881 194 48 54 chr11 49764455 49764641 -99018831 - MER91B DNA MER1_type 0 190 6 213 108 0 0 chr11 49764689 49764726 -99018746 + (T)n Simple_repeat Simple_repeat 1 37 0 5893 18 2 5 chr11 49764726 49765355 -99018117 - SVA Other Other 0 1386 760 1250 134 27 40 chr11 49815544 49815768 -98967704 - AluSx SINE Alu -91 221 1 1667 63 15 5 chr11 49815847 49816052 -98967420 + AluY SINE Alu 1 207 -104 1248 174 11 33 chr11 49816105 49816375 -98967097 - L1MB8 LINE L1 -1 6177 5914 1642 160 100 4 chr11 49816378 49816647 -98966825 + AluSg SINE Alu 1 295 -15 2230 120 3 0 chr11 49816677 49816968 -98966504 + AluSx SINE Alu 1 292 -20 727 294 7 11 chr11 49816988 49817274 -98966198 + AluSc SINE Alu 1 285 -14 732 122 0 58 chr11 49817410 49817549 -98965923 + AluSg/x SINE Alu 178 308 -4 346 259 27 54 chr11 49818112 49818259 -98965213 + MIR SINE MIR 31 173 -89 2276 102 7 0 chr11 49818277 49818572 -98964900 - AluSx SINE Alu -15 297 1 214 158 0 0 chr11 49818665 49818703 -98964769 + (TG)n Simple_repeat Simple_repeat 2 39 0 198 0 0 0 chr11 49818949 49818971 -98964501 + (T)n Simple_repeat Simple_repeat 1 22 0 1240 116 0 6 chr11 49819547 49819719 -98963753 - AluSc SINE Alu -99 210 40 1162 174 66 140 chr11 49819759 49819892 -98963580 - MER34 LTR ERV1 -91 451 310 2134 109 16 0 chr11 49819892 49820195 -98963277 + AluSx SINE Alu 1 308 -4 1162 174 66 140 chr11 49820195 49820548 -98962924 - MER34 LTR ERV1 -232 310 1 2234 92 0 3 chr11 49820563 49820845 -98962627 + AluSq SINE Alu 1 281 -32 189 0 0 0 chr11 49820846 49820867 -98962605 + (CAA)n Simple_repeat Simple_repeat 1 21 0 1157 187 38 0 chr11 49820869 49821104 -98962368 + MER90 LTR ERV1 370 613 -1 649 191 0 0 chr11 49821176 49821286 -98962186 + FLAM_A SINE Alu 1 110 -32 2239 128 0 0 chr11 49821321 49821619 -98961853 + AluSx SINE Alu 1 298 -14 2193 91 0 17 chr11 49821619 49821915 -98961557 + AluY SINE Alu 1 291 -20 968 145 7 7 chr11 49822028 49822173 -98961299 + FRAM SINE Alu 1 144 -32 1530 194 68 0 chr11 49822173 49822340 -98961132 - AluJb SINE Alu -8 304 109 213 39 0 0 chr11 49822340 49822366 -98961106 + (TTG)n Simple_repeat Simple_repeat 3 28 0 1530 194 68 0 chr11 49822366 49822476 -98960996 - AluJb SINE Alu -203 109 8 424 219 123 32 chr11 49823165 49823320 -98960152 + MIR SINE MIR 82 250 -12 2225 102 17 0 chr11 49823558 49823853 -98959619 - AluSx SINE Alu -12 300 1 566 134 0 0 chr11 49824631 49824713 -98958759 - AluS SINE Alu -229 83 2 858 110 22 0 chr11 49824715 49824851 -98958621 + MER41A LTR ERV1 416 554 0 2412 86 13 0 chr11 49824987 49825288 -98958184 - AluSg SINE Alu -5 305 1 376 94 0 47 chr11 49825673 49825737 -98957735 + MER41B LTR ERV1 333 393 -242 2384 97 0 0 chr11 49825921 49826219 -98957253 + AluSx SINE Alu 1 298 -14 208 309 144 47 chr11 49826430 49826666 -98956806 - L2 LINE L2 -339 2975 2717 593 73 0 101 chr11 49826782 49826891 -98956581 - L1PA3 LINE L1 -1 6154 6057 766 181 0 0 chr11 49826891 49827024 -98956448 - FLAM_C SINE Alu 0 133 1 1094 207 16 20 chr11 49827024 49827275 -98956197 + MER58B DNA MER1_type 77 326 -15 1985 97 3 97 chr11 49827412 49827754 -98955718 + AluSp SINE Alu 1 310 -3 778 204 0 6 chr11 49827761 49827923 -98955549 + MER90 LTR ERV1 207 367 -247 499 108 0 0 chr11 49828121 49828195 -98955277 + Alu SINE Alu 227 300 -11 988 224 4 25 chr11 49828221 49828466 -98955006 - AluSq SINE Alu 0 313 74 458 286 81 22 chr11 49828492 49828677 -98954795 - L1MC/D LINE L1 -2003 5805 5610 225 306 162 0 chr11 49828687 49828798 -98954674 + L2 LINE L2 2923 3051 -221 229 283 43 76 chr11 49828857 49828949 -98954523 + L2 LINE L2 3184 3272 0 1890 125 52 7 chr11 49829078 49829367 -98954105 - AluSq SINE Alu -11 302 1 2598 76 0 0 chr11 49829381 49829684 -98953788 - AluSq SINE Alu -10 303 1 225 245 9 19 chr11 49831731 49831837 -98951635 + C-rich Low_complexity Low_complexity 6 110 0 252 0 0 0 chr11 49832199 49832227 -98951245 + (TA)n Simple_repeat Simple_repeat 2 29 0 2254 116 13 0 chr11 49832683 49832986 -98950486 - AluSx SINE Alu -5 307 1 309 263 59 32 chr11 49833014 49833200 -98950272 - L1ME4a LINE L1 -73 6048 5858 573 220 174 54 chr11 49833288 49833547 -98949925 - MER102b DNA MER1_type -2 339 50 224 265 0 29 chr11 49833565 49833633 -98949839 - MIR SINE MIR -29 233 168 228 203 119 0 chr11 49833661 49833720 -98949752 - L2 LINE L2 -70 3243 3178 648 120 12 2 chr11 49833826 49834076 -98949396 + AluSq SINE Alu 1 301 -12 2453 80 23 0 chr11 49834222 49834522 -98948950 - AluSg SINE Alu -3 307 1 2071 136 7 0 chr11 49835842 49836136 -98947336 + AluSx SINE Alu 1 296 -16 21 36 0 0 chr11 49836144 49836172 -98947300 + AT_rich Low_complexity Low_complexity 1 28 0 1692 168 3 36 chr11 49836446 49836755 -98946717 + AluJo SINE Alu 1 299 -13 1804 176 3 3 chr11 49836761 49837057 -98946415 + AluJb SINE Alu 7 302 -10 1375 160 13 30 chr11 49837368 49837599 -98945873 - AluJo SINE Alu -45 267 41 631 219 0 0 chr11 49837604 49837751 -98945721 - FLAM_A SINE Alu 0 147 1 2537 81 0 7 chr11 49837784 49838092 -98945380 + AluSq SINE Alu 1 306 -7 757 267 118 26 chr11 49838093 49838606 -98944866 + L1MB8 LINE L1 5279 5884 -294 343 328 141 10 chr11 49839425 49839617 -98943855 + MIR SINE MIR 46 262 0 401 265 102 41 chr11 49840437 49840584 -98942888 - MIR SINE MIR -60 202 47 288 289 124 44 chr11 49841663 49841888 -98941584 - L3 LINE CR1 -264 1313 1071 190 234 26 39 chr11 49841891 49841968 -98941504 + MIR SINE MIR 53 128 -134 331 207 0 0 chr11 49842073 49842131 -98941341 - L2 LINE L2 0 3272 3215 1140 150 0 0 chr11 49842584 49842751 -98940721 - AluSg/x SINE Alu -9 303 137 481 346 11 54 chr11 49842756 49842847 -98940625 - L2 LINE L2 -568 2746 2653 2098 72 45 8 chr11 49842847 49843112 -98940360 + AluSc SINE Alu 17 291 -18 481 346 11 54 chr11 49843112 49843373 -98940099 - L2 LINE L2 -661 2653 2409 1836 72 34 4 chr11 49843721 49843956 -98939516 + AluSx SINE Alu 55 296 -16 604 111 28 0 chr11 49844324 49844432 -98939040 + L1MB7 LINE L1 6055 6165 -19 203 77 0 26 chr11 49844908 49844947 -98938525 + (TTAA)n Simple_repeat Simple_repeat 1 38 0 2111 133 0 7 chr11 49844947 49845233 -98938239 - AluSx SINE Alu -28 284 1 473 213 201 0 chr11 49845300 49845451 -98938021 + MER5A DNA MER1_type 4 189 0 2042 132 30 0 chr11 49846217 49846512 -98936960 - AluSq SINE Alu -9 304 1 2601 68 0 0 chr11 49847459 49847770 -98935702 - AluY SINE Alu 0 311 1 1727 138 6 75 chr11 49847770 49847961 -98935511 - AluSx SINE Alu -7 305 143 2225 111 0 3 chr11 49847961 49848250 -98935222 - AluSx SINE Alu -24 288 1 1727 138 6 75 chr11 49848250 49848384 -98935088 - AluSx SINE Alu -169 143 1 2326 86 10 3 chr11 49851427 49851731 -98931741 + AluSg SINE Alu 1 306 -4 1954 151 7 13 chr11 49851787 49852091 -98931381 - AluSg SINE Alu -8 302 1 591 182 18 0 chr11 49852343 49852453 -98931019 + MER3 DNA MER1_type 2 113 -96 2357 86 17 3 chr11 49852466 49852767 -98930705 + AluSp SINE Alu 2 306 -7 26 0 0 0 chr11 49852768 49852794 -98930678 + AT_rich Low_complexity Low_complexity 1 26 0 2157 132 0 10 chr11 49853323 49853626 -98929846 + AluSx SINE Alu 1 300 -12 232 310 84 53 chr11 49853910 49854109 -98929363 + MIR SINE MIR 16 220 -42 335 269 70 86 chr11 49854498 49854654 -98928818 - MIR SINE MIR -74 188 34 2232 108 7 16 chr11 49854654 49854961 -98928511 - AluSx SINE Alu -8 304 1 335 269 70 86 chr11 49854961 49854990 -98928482 - MIR SINE MIR -228 34 6 21 0 0 0 chr11 49855129 49855150 -98928322 + AT_rich Low_complexity Low_complexity 1 21 0 1762 182 3 19 chr11 49855166 49855473 -98927999 - AluJo SINE Alu -10 302 1 23 54 0 0 chr11 49855481 49855518 -98927954 + AT_rich Low_complexity Low_complexity 1 37 0 259 200 0 0 chr11 49855539 49855584 -98927888 - MIR SINE MIR -56 152 108 2420 86 0 0 chr11 49856762 49857065 -98926407 + AluSc SINE Alu 1 303 -6 2319 107 7 0 chr11 49858480 49858778 -98924694 + AluSx SINE Alu 1 300 -12 217 236 146 0 chr11 49859089 49859144 -98924328 - L2 LINE L2 0 3272 3210 626 319 50 8 chr11 49859207 49859448 -98924024 - MIR SINE MIR 0 262 12 333 270 52 26 chr11 49859611 49859726 -98923746 + MIR SINE MIR 24 141 -121 762 221 156 22 chr11 49859726 49859957 -98923515 - MIR SINE MIR 0 262 1 546 202 290 11 chr11 49860562 49860745 -98922727 + MIR SINE MIR 29 262 0 343 260 0 67 chr11 49860867 49860971 -98922501 + MIR SINE MIR 100 196 -66 1959 126 30 17 chr11 49860971 49861273 -98922199 - AluSx SINE Alu -6 306 1 1608 154 90 4 chr11 49861641 49861889 -98921583 + AluJo SINE Alu 14 288 -24 213 39 0 0 chr11 49861889 49861915 -98921557 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1608 154 90 4 chr11 49861915 49861933 -98921539 + AluJo SINE Alu 288 303 -9 663 296 27 0 chr11 49862017 49862203 -98921269 - MIR SINE MIR -26 236 46 189 0 0 0 chr11 49862760 49862781 -98920691 + (TC)n Simple_repeat Simple_repeat 1 21 0 1698 149 72 36 chr11 49864839 49865201 -98918271 - THE1C LTR MaLR 0 375 1 2229 109 6 6 chr11 49865479 49865791 -98917681 + AluSx SINE Alu 1 312 0 274 263 352 0 chr11 49866527 49866706 -98916766 - MIR SINE MIR -15 247 6 291 212 242 15 chr11 49867533 49867665 -98915807 - L2 LINE L2 -1 3271 3110 2045 139 7 0 chr11 49869485 49869787 -98913685 - AluJb SINE Alu -7 305 2 2290 106 7 0 chr11 49870181 49870484 -98912988 + AluSx SINE Alu 1 305 -7 2196 103 14 0 chr11 49870677 49870967 -98912505 + AluSp SINE Alu 1 294 -19 1869 153 20 10 chr11 49870974 49871274 -98912198 + AluJb SINE Alu 1 303 -9 190 260 156 26 chr11 49873493 49873570 -98909902 - L2 LINE L2 -9 3263 3177 1692 160 38 20 chr11 49873852 49874145 -98909327 + AluJo SINE Alu 5 302 -10 261 331 159 18 chr11 49874203 49874366 -98909106 - MER5A DNA MER1_type -3 186 1 2025 131 10 20 chr11 49874599 49874896 -98908576 - AluSx SINE Alu -17 295 2 443 169 0 12 chr11 49876815 49876898 -98906574 - AluSp/q SINE Alu -6 307 226 522 268 65 91 chr11 49877424 49877775 -98905697 + L2 LINE L2 2968 3309 -4 2166 47 0 12 chr11 49878352 49878610 -98904862 - AluY SINE Alu -13 298 44 198 270 14 14 chr11 49879305 49879379 -98904093 - MIR SINE MIR -12 250 177 * 1215 271 27 53 chr11 49879378 49879772 -98903700 + L2 LINE L2 2784 3145 -168 2148 116 3 0 chr11 49879772 49880082 -98903390 - AluSx SINE Alu 0 311 1 1215 271 27 53 chr11 49880082 49880246 -98903226 + L2 LINE L2 3145 3312 -1 36783 79 14 13 chr11 49880301 49884136 -98899336 - L1PA6 LINE L1 0 6154 2327 2584 59 0 7 chr11 49884136 49884441 -98899031 - AluY SINE Alu -8 303 1 36783 79 14 13 chr11 49884441 49885330 -98898142 - L1PA6 LINE L1 -3827 2327 1441 2534 81 7 0 chr11 49885330 49885638 -98897834 - AluSg SINE Alu 0 310 1 36783 79 14 13 chr11 49885638 49887048 -98896424 - L1PA6 LINE L1 -4713 1441 11 2648 71 3 0 chr11 49887060 49887371 -98896101 - AluSp SINE Alu -1 312 1 401 265 0 82 chr11 49887371 49887518 -98895954 - MIR SINE MIR -113 149 15 348 227 66 9 chr11 49887848 49887955 -98895517 + MIR SINE MIR 90 208 0 481 281 98 44 chr11 49888071 49888274 -98895198 + MIR SINE MIR 6 219 -43 22 0 0 0 chr11 49888614 49888636 -98894836 + AT_rich Low_complexity Low_complexity 1 22 0 258 250 189 30 chr11 49889053 49889185 -98894287 - MIR SINE MIR -109 153 1 275 196 0 0 chr11 49889263 49889309 -98894163 + AluSx SINE Alu 1 46 -255 1140 236 7 7 chr11 49889591 49889871 -98893601 + AluSx SINE Alu 29 308 -4 2310 80 7 3 chr11 49889881 49890170 -98893302 + AluSc SINE Alu 6 295 -14 344 175 25 12 chr11 49890175 49890198 -98893274 - L1MB8 LINE L1 -279 5899 5878 573 76 13 0 chr11 49890198 49890277 -98893195 + MADE1 DNA Mariner 1 80 0 344 175 25 12 chr11 49890277 49890333 -98893139 - L1MB8 LINE L1 -300 5878 5819 328 240 62 21 chr11 49890335 49890431 -98893041 - L2 LINE L2 -14 3299 3200 711 230 148 0 chr11 49891642 49891851 -98891621 + MIR SINE MIR 15 254 -8 517 250 53 32 chr11 49891917 49892105 -98891367 + MIR SINE MIR 58 249 -13 2247 113 0 3 chr11 49892110 49892402 -98891070 - AluSx SINE Alu -21 291 1 984 159 74 0 chr11 49892695 49892871 -98890601 - MER5A DNA MER1_type 0 189 1 2170 96 48 0 chr11 49892891 49893184 -98890288 - AluSx SINE Alu -5 307 1 350 163 133 51 chr11 49894250 49894348 -98889124 - MER94 DNA DNA -5 129 24 797 201 77 0 chr11 49894665 49894859 -98888613 - MER3 DNA MER1_type 0 209 1 207 100 0 0 chr11 49894888 49894918 -98888554 + (A)n Simple_repeat Simple_repeat 1 30 0 1908 153 3 10 chr11 49895545 49895845 -98887627 - AluSx SINE Alu -14 298 1 2479 74 0 3 chr11 49896054 49896352 -98887120 + AluY SINE Alu 1 297 -14 1663 114 122 11 chr11 49896598 49896860 -98886612 + AluSg SINE Alu 1 291 -19 2189 133 3 0 chr11 49897067 49897376 -98886096 + AluSx SINE Alu 3 312 0 2293 120 0 3 chr11 49897386 49897687 -98885785 + AluSx SINE Alu 1 300 -12 1777 185 31 0 chr11 49897695 49897987 -98885485 + AluJb SINE Alu 1 301 -11 265 148 98 66 chr11 49898252 49898313 -98885159 - L2 LINE L2 0 3272 3210 389 327 77 55 chr11 49899063 49899283 -98884189 - MIR SINE MIR -34 228 4 493 244 108 11 chr11 49901125 49901301 -98882171 - MIR SINE MIR -37 225 33 3023 9 0 0 chr11 49901396 49901714 -98881758 - AluYb8 SINE Alu 0 318 1 333 286 130 55 chr11 49906653 49906961 -98876511 - L2 LINE L2 -8 3264 2934 2401 94 0 0 chr11 49907994 49908293 -98875179 + AluY SINE Alu 1 299 -12 324 226 71 12 chr11 49908413 49908497 -98874975 + MIR SINE MIR 37 125 -137 234 175 0 53 chr11 49908497 49908554 -98874918 + AluSp SINE Alu 113 166 -137 1829 159 3 52 chr11 49908555 49908881 -98874591 + AluJb SINE Alu 1 310 -2 2263 102 33 0 chr11 49908884 49909187 -98874285 + AluSq SINE Alu 1 313 0 1953 114 45 14 chr11 49910751 49911040 -98872432 + AluSx SINE Alu 1 298 -14 275 225 0 28 chr11 49913194 49913265 -98870207 + MLT1C LTR MaLR 123 191 -314 2312 128 0 0 chr11 49913269 49913574 -98869898 + AluSx SINE Alu 1 305 -7 883 136 0 0 chr11 49913608 49913733 -98869739 + FLAM_A SINE Alu 6 130 -12 968 256 27 40 chr11 49913738 49913892 -98869580 + MLT1C LTR MaLR 171 321 -146 1571 163 73 24 chr11 49913892 49914180 -98869292 + AluJb SINE Alu 1 302 -10 968 256 27 40 chr11 49914180 49914326 -98869146 + MLT1C LTR MaLR 321 467 0 360 252 59 17 chr11 49914363 49914482 -98868990 + MIR SINE MIR 59 182 -80 485 308 82 11 chr11 49914662 49914844 -98868628 + L2 LINE L2 2272 2466 -848 1299 124 6 0 chr11 49914845 49915022 -98868450 - AluSg/x SINE Alu -1 311 134 2294 110 0 0 chr11 49915022 49915314 -98868158 - AluSg SINE Alu -18 292 1 2226 98 27 0 chr11 49915331 49915626 -98867846 - AluSg SINE Alu -7 303 1 670 197 46 0 chr11 49915626 49915778 -98867694 - MER90 LTR ERV1 -416 159 1 4607 75 19 65 chr11 49915916 49916079 -98867393 + LTR8 LTR ERV1 1 170 -521 1942 137 58 0 chr11 49916079 49916349 -98867123 + AluSx SINE Alu 1 289 -23 185 62 0 31 chr11 49916349 49916381 -98867091 + (CATA)n Simple_repeat Simple_repeat 2 32 0 4607 75 19 65 chr11 49916388 49916772 -98866700 + LTR8 LTR ERV1 170 510 -181 2216 118 13 0 chr11 49916772 49917077 -98866395 + AluSx SINE Alu 1 309 -3 4607 75 19 65 chr11 49917077 49917252 -98866220 + LTR8 LTR ERV1 510 691 0 720 187 8 0 chr11 49917314 49917448 -98866024 + FLAM_C SINE Alu 3 137 -6 446 114 0 45 chr11 49917758 49917846 -98865626 - AluSx SINE Alu 0 312 229 2664 52 0 7 chr11 49917847 49918156 -98865316 - AluY SINE Alu -4 307 1 1570 125 35 0 chr11 49918156 49918387 -98865085 - AluSx SINE Alu -72 240 1 2067 109 7 0 chr11 49918428 49918748 -98864724 - AluSp SINE Alu 0 322 1 1302 212 7 26 chr11 49918750 49919056 -98864416 - AluJo SINE Alu -2 300 1 1248 140 0 0 chr11 49919141 49919320 -98864152 - AluSx SINE Alu -5 307 129 1948 124 3 7 chr11 49919324 49919607 -98863865 - AluSx SINE Alu -3 309 28 468 240 0 0 chr11 49919635 49919756 -98863716 - AluSx SINE Alu -185 128 8 2475 80 3 0 chr11 49920626 49920928 -98862544 + AluSp SINE Alu 1 303 -10 1679 138 27 90 chr11 49920939 49921272 -98862200 + AluJo SINE Alu 1 312 0 316 254 149 0 chr11 49921299 49921413 -98862059 - L2 LINE L2 -218 3054 2924 2031 126 38 0 chr11 49921533 49921826 -98861646 + AluSx SINE Alu 1 304 -8 2044 131 3 24 chr11 49922027 49922324 -98861148 - AluJo SINE Alu -21 291 1 399 299 16 16 chr11 49922662 49922789 -98860683 + MIR3 SINE MIR 81 207 -1 1096 155 35 149 chr11 49923224 49923361 -98860111 + AluYb8 SINE Alu 1 152 -156 2361 112 0 0 chr11 49923361 49923673 -98859799 + AluSx SINE Alu 1 312 0 1096 155 35 149 chr11 49923673 49923883 -98859589 + AluYb8 SINE Alu 152 308 0 2338 91 10 0 chr11 49923991 49924287 -98859185 + AluSx SINE Alu 4 302 -10 926 165 51 0 chr11 49924287 49924445 -98859027 + AluJb SINE Alu 134 299 -13 2352 91 3 3 chr11 49925208 49925505 -98857967 - AluSq SINE Alu -16 297 1 318 225 25 25 chr11 49925779 49925859 -98857613 + MLT1D LTR MaLR 27 106 -399 2223 119 10 0 chr11 49925873 49926176 -98857296 + AluSx SINE Alu 4 309 -3 3217 189 18 0 chr11 49926176 49926827 -98856645 + L1MB2 LINE L1 5497 6159 -12 391 239 15 46 chr11 49926828 49926958 -98856514 - AluSg/x SINE Alu -1 299 174 2252 97 3 13 chr11 49927629 49927792 -98855680 - AluSx SINE Alu -15 297 137 2327 112 3 0 chr11 49927792 49928097 -98855375 - AluSq SINE Alu -7 306 1 2252 97 3 13 chr11 49928097 49928233 -98855239 - AluSx SINE Alu -175 137 1 238 262 60 0 chr11 49928237 49928321 -98855151 - L1MB7 LINE L1 0 6184 6096 1184 214 88 88 chr11 49928361 49928685 -98854787 - L1ME1 LINE L1 -46 6120 5794 1567 169 45 48 chr11 49928685 49928998 -98854474 - AluJo SINE Alu 0 312 1 1184 214 88 88 chr11 49928998 49929206 -98854266 - L1ME1 LINE L1 -371 5795 5588 794 241 65 15 chr11 49929184 49929446 -98854026 - L1MEc LINE L1 -4540 1856 1582 * 24 77 0 0 chr11 49929446 49929498 -98853974 + AT_rich Low_complexity Low_complexity 1 52 0 2110 132 7 0 chr11 49929555 49929851 -98853621 + AluSx SINE Alu 1 298 -14 2332 93 3 7 chr11 49929851 49930161 -98853311 + AluY SINE Alu 1 309 -2 1365 193 83 8 chr11 49930175 49930439 -98853033 + AluJo SINE Alu 1 284 -28 189 0 0 0 chr11 49930442 49930463 -98853009 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 2142 85 3 69 chr11 49930583 49930901 -98852571 - AluSx SINE Alu -15 297 1 204 158 0 0 chr11 49931083 49931121 -98852351 + CT-rich Low_complexity Low_complexity 3 40 0 226 146 0 24 chr11 49931159 49931200 -98852272 - MER66A LTR ERV1 -150 328 289 283 152 25 25 chr11 49931200 49931279 -98852193 - L1MEc LINE L1 -5330 1066 988 1994 149 7 7 chr11 49931280 49931589 -98851883 - AluSx SINE Alu -3 309 1 412 316 7 7 chr11 49932015 49932151 -98851321 + AluSg/x SINE Alu 162 297 -3 1128 215 12 4 chr11 49932169 49932415 -98851057 + AluSq SINE Alu 10 257 -56 948 118 86 26 chr11 49932468 49932620 -98850852 + AluJb SINE Alu 136 296 -16 853 210 0 6 chr11 49932695 49932862 -98850610 + MIR SINE MIR 3 168 -94 2310 97 0 7 chr11 49932918 49933207 -98850265 - AluSc SINE Alu -22 287 1 2427 95 3 0 chr11 49933481 49933786 -98849686 - AluSx SINE Alu -5 307 2 2280 107 3 0 chr11 49934907 49935207 -98848265 + AluSx SINE Alu 12 312 0 2019 123 3 39 chr11 49935223 49935532 -98847940 + AluJb SINE Alu 1 298 -14 2168 133 17 0 chr11 49935989 49936291 -98847181 + AluSx SINE Alu 1 307 -5 748 125 0 33 chr11 49936297 49936417 -98847055 + FLAM_C SINE Alu 1 116 -17 189 0 0 0 chr11 49936422 49936443 -98847029 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1996 112 0 4 chr11 49936444 49936702 -98846770 - AluSc SINE Alu -52 257 1 27 0 0 0 chr11 49936705 49936732 -98846740 + AT_rich Low_complexity Low_complexity 1 27 0 2327 96 10 0 chr11 49937705 49937997 -98845475 - AluSq SINE Alu -18 295 1 359 282 183 0 chr11 49938524 49938655 -98844817 - MIR SINE MIR 0 262 108 600 204 74 133 chr11 49939716 49939782 -98843690 - MIR SINE MIR 0 262 194 730 153 0 8 chr11 49939782 49939906 -98843566 - FLAM_C SINE Alu -10 123 1 600 204 74 133 chr11 49939906 49939963 -98843509 - MIR SINE MIR -68 194 135 756 196 49 12 chr11 49939963 49940126 -98843346 - FAM SINE Alu -6 169 1 600 204 74 133 chr11 49940126 49940271 -98843201 - MIR SINE MIR -127 135 9 2642 53 0 0 chr11 49941770 49942072 -98841400 + AluY SINE Alu 1 302 -9 828 179 0 0 chr11 49942128 49942262 -98841210 - FLAM_C SINE Alu -1 142 9 485 262 43 28 chr11 49942286 49942427 -98841045 + MIR SINE MIR 8 150 -112 2367 93 20 0 chr11 49942462 49942762 -98840710 + AluSx SINE Alu 4 309 -3 242 192 19 0 chr11 49942768 49942820 -98840652 + MIR SINE MIR 136 188 -74 2049 119 0 4 chr11 49942832 49943110 -98840362 + AluSq SINE Alu 2 278 -35 1052 95 13 0 chr11 49943111 49943269 -98840203 + (GAAA)n Simple_repeat Simple_repeat 2 161 0 378 260 123 6 chr11 49943416 49943578 -98839894 - MIR3 SINE MIR -22 186 30 231 182 18 18 chr11 49945432 49945487 -98837985 - MIR SINE MIR -55 207 153 2046 141 6 32 chr11 49945523 49945835 -98837637 + AluJb SINE Alu 1 304 -8 1882 83 68 54 chr11 49945923 49946230 -98837242 + AluY SINE Alu 1 311 0 2318 65 11 0 chr11 49946237 49946556 -98836916 + AluSp SINE Alu 5 326 0 243 220 31 13 chr11 49946628 49946702 -98836770 - MER5B DNA MER1_type -54 124 60 204 40 0 0 chr11 49946708 49946733 -98836739 + (T)n Simple_repeat Simple_repeat 1 25 0 2296 100 10 0 chr11 49947157 49947456 -98836016 - AluSx SINE Alu -10 302 1 2400 69 7 0 chr11 49947619 49947909 -98835563 - AluY SINE Alu -19 292 1 328 257 27 0 chr11 49947955 49948029 -98835443 + MIR3 SINE MIR 85 160 -48 1930 165 0 13 chr11 49948355 49948664 -98834808 - AluJo SINE Alu -7 305 1 2209 82 13 29 chr11 49948672 49948978 -98834494 - AluSx SINE Alu -11 301 1 358 309 8 8 chr11 49951434 49951560 -98831912 - L2 LINE L2 -23 3290 3165 2381 102 0 0 chr11 49951902 49952195 -98831277 - AluSx SINE Alu -19 293 1 1795 127 25 22 chr11 49952220 49952495 -98830977 - AluJo SINE Alu -36 276 1 252 0 0 0 chr11 49952903 49952931 -98830541 + (CA)n Simple_repeat Simple_repeat 2 29 0 1640 131 0 17 chr11 49954255 49954492 -98828980 - AluSq SINE Alu -16 297 65 1243 100 0 0 chr11 49954492 49954642 -98828830 - AluSq/x SINE Alu -162 150 1 2205 124 0 0 chr11 49954644 49954934 -98828538 - AluSx SINE Alu -22 290 1 283 268 72 10 chr11 49956204 49956301 -98827171 + L2 LINE L2 1350 1452 -1862 1995 279 170 17 chr11 49956446 49957257 -98826215 + L2 LINE L2 1723 2766 -547 2378 94 3 0 chr11 49957257 49957554 -98825918 - AluSp SINE Alu -15 298 1 1995 279 170 17 chr11 49957554 49957895 -98825577 + L2 LINE L2 2766 3053 -260 2442 87 0 3 chr11 49957953 49958252 -98825220 - AluSx SINE Alu -14 298 1 935 122 0 0 chr11 49958259 49958382 -98825090 - AluSq/x SINE Alu -189 123 1 437 229 33 49 chr11 49958384 49958506 -98824966 + L2 LINE L2 3167 3286 -27 2511 64 0 3 chr11 49960092 49960390 -98823082 + AluY SINE Alu 1 297 -14 2262 93 13 23 chr11 49961055 49961355 -98822117 + AluSc SINE Alu 1 297 -12 598 215 176 56 chr11 49962070 49962303 -98821169 - MIR SINE MIR 0 262 2 2124 147 7 0 chr11 49962558 49962864 -98820608 + AluJo SINE Alu 2 309 -3 850 159 0 3 chr11 49962865 49963042 -98820430 + AluJ SINE Alu 83 308 -4 363 252 136 0 chr11 49964237 49964340 -98819132 + L2 LINE L2 3197 3313 0 2369 83 0 10 chr11 49965063 49965365 -98818107 - AluSq SINE Alu -14 299 1 1721 174 56 11 chr11 49966132 49966419 -98817053 - AluJb SINE Alu -12 300 1 2026 102 75 10 chr11 49966434 49966727 -98816745 - AluSx SINE Alu 0 312 1 716 226 119 13 chr11 49966758 49966984 -98816488 - L1ME1 LINE L1 0 6166 5917 1369 209 16 0 chr11 49966993 49967273 -98816199 + AluJo SINE Alu 25 308 0 666 205 37 12 chr11 49967276 49967437 -98816035 - L1MD2 LINE L1 -425 5934 5770 192 200 0 0 chr11 49967586 49967621 -98815851 - MIR SINE MIR -15 247 213 2312 118 3 0 chr11 49967644 49967950 -98815522 - AluSx SINE Alu -5 307 1 492 224 0 0 chr11 49968434 49968519 -98814953 + AluJ/FLAM SINE Alu 2 86 -226 1266 190 32 28 chr11 49968523 49968770 -98814702 - AluJo SINE Alu -64 248 1 22 0 0 0 chr11 49968772 49968794 -98814678 + AT_rich Low_complexity Low_complexity 1 22 0 919 173 0 40 chr11 49968794 49968967 -98814505 + FRAM SINE Alu 1 166 0 650 250 6 12 chr11 49969075 49969247 -98814225 - L1MC4 LINE L1 -1422 6620 6450 477 0 0 0 chr11 49969767 49969820 -98813652 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 2077 123 44 0 chr11 49969820 49970113 -98813359 - AluSx SINE Alu -6 306 1 2329 119 0 6 chr11 49970131 49970442 -98813030 - AluSx SINE Alu -3 309 1 635 147 20 0 chr11 49970520 49970622 -98812850 - AluSg/x SINE Alu -16 293 190 2374 106 0 0 chr11 49970640 49970941 -98812531 - AluSc SINE Alu -8 301 1 488 267 27 7 chr11 49970983 49971129 -98812343 + L1MB2 LINE L1 3701 3849 -2297 1196 99 56 0 chr11 49971134 49971295 -98812177 + AluSq SINE Alu 136 305 -8 577 164 48 79 chr11 49971301 49971394 -98812078 + L1MB2 LINE L1 5171 5258 -888 2482 94 0 0 chr11 49971394 49971702 -98811770 + AluSq SINE Alu 1 308 -5 577 164 48 79 chr11 49971702 49971773 -98811699 + L1MB2 LINE L1 5258 5330 -816 342 140 0 0 chr11 49971773 49971830 -98811642 + AluJo SINE Alu 72 128 -174 1118 174 0 0 chr11 49971877 49972055 -98811417 + AluJo SINE Alu 118 295 -17 4536 161 25 1 chr11 49972055 49972217 -98811255 + L1MB2 LINE L1 5325 5482 -689 2130 139 10 0 chr11 49972217 49972520 -98810952 + AluSx SINE Alu 1 306 -6 4536 161 25 1 chr11 49972520 49973173 -98810299 + L1MB2 LINE L1 5482 6159 -12 2090 89 3 18 chr11 49973174 49973456 -98810016 - AluSg SINE Alu -9 301 24 335 183 0 0 chr11 49973758 49973818 -98809654 + AluS SINE Alu 231 290 -11 2561 105 3 18 chr11 49973845 49974234 -98809238 + LTR8 LTR ERV1 153 535 -156 2045 157 0 0 chr11 49974235 49974535 -98808937 + AluJb SINE Alu 1 300 -12 529 296 53 6 chr11 49974541 49974710 -98808762 - MIR SINE MIR -6 256 80 2338 85 7 0 chr11 49974725 49975019 -98808453 - AluSx SINE Alu -16 296 1 23 68 0 0 chr11 49976800 49976844 -98806628 + GC_rich Low_complexity Low_complexity 1 44 0 21 82 0 0 chr11 49977224 49977273 -98806199 + GC_rich Low_complexity Low_complexity 1 49 0 210 238 0 71 chr11 49977567 49977651 -98805821 + G-rich Low_complexity Low_complexity 2 79 0 198 0 0 0 chr11 49977702 49977724 -98805748 + (CGGGGG)n Simple_repeat Simple_repeat 3 24 0 2097 92 17 7 chr11 49980545 49980839 -98802633 - AluSx SINE Alu -15 297 1 1981 101 11 0 chr11 49982499 49982776 -98800696 - AluSx SINE Alu -18 294 15 377 333 35 0 chr11 49983459 49983573 -98799899 + L2 LINE L2 3150 3267 -5 520 216 128 84 chr11 49984162 49984315 -98799157 + MER46C DNA MER2_type 71 241 -97 2298 144 76 107 chr11 49984315 49984502 -98798970 - MER44D DNA MER2_type -1882 605 414 1934 119 0 14 chr11 49984502 49984795 -98798677 - AluSx SINE Alu -23 289 1 2298 144 76 107 chr11 49984795 49985175 -98798297 - MER44D DNA MER2_type -2073 414 1 520 216 128 84 chr11 49985175 49985271 -98798201 + MER46C DNA MER2_type 241 331 -7 465 245 64 94 chr11 49985901 49986134 -98797338 - L1ME4a LINE L1 -23 6098 5873 2067 84 20 10 chr11 49986580 49986877 -98796595 - AluY SINE Alu -11 300 1 2008 115 3 3 chr11 49986989 49987284 -98796188 + AluSg SINE Alu 1 295 -15 29 0 0 0 chr11 49987737 49987766 -98795706 + AT_rich Low_complexity Low_complexity 1 29 0 2001 137 0 7 chr11 49987766 49988066 -98795406 - AluSx SINE Alu -14 298 1 513 213 201 0 chr11 49988133 49988284 -98795188 + MER5A DNA MER1_type 4 189 0 2147 95 30 0 chr11 49989050 49989345 -98794127 - AluSq SINE Alu -9 304 1 2504 55 0 0 chr11 49990292 49990603 -98792869 - AluY SINE Alu 0 311 1 1573 139 6 68 chr11 49990606 49990794 -98792678 - AluSx SINE Alu -9 303 142 2071 111 0 3 chr11 49990794 49991083 -98792389 - AluSx SINE Alu -24 288 1 1573 139 6 68 chr11 49991083 49991217 -98792255 - AluSx SINE Alu -170 142 1 2271 77 7 0 chr11 49994260 49994559 -98788913 + AluSg SINE Alu 1 301 -9 1789 157 7 13 chr11 49994620 49994926 -98788546 - AluSx SINE Alu -8 304 1 2261 82 10 3 chr11 49994999 49995302 -98788170 - AluY SINE Alu -6 305 1 880 223 6 0 chr11 49995356 49995531 -98787941 + FRAM SINE Alu 1 173 -3 662 281 0 12 chr11 49998896 49999063 -98784409 + MIR3 SINE MIR 17 181 -27 317 242 152 10 chr11 49999415 49999514 -98783958 + MIR3 SINE MIR 81 193 -15 2147 116 0 3 chr11 50000515 50000818 -98782654 - AluSx SINE Alu -10 302 1 2162 104 7 0 chr11 50001283 50001591 -98781881 + AluSp SINE Alu 1 310 -3 2186 96 0 19 chr11 50001597 50001909 -98781563 + AluSx SINE Alu 1 306 -6 442 228 41 0 chr11 50001921 50002044 -98781428 + L1ME4a LINE L1 5734 5861 -260 354 240 182 0 chr11 50002088 50002209 -98781263 + L1ME4a LINE L1 5962 6104 -17 1876 147 0 3 chr11 50002215 50002527 -98780945 - AluJb SINE Alu -1 311 1 241 279 101 13 chr11 50003723 50003802 -98779670 - L2 LINE L2 -1 3271 3186 1610 163 42 26 chr11 50003970 50004277 -98779195 - AluJb SINE Alu 0 312 1 2297 93 0 0 chr11 50004651 50004961 -98778511 - AluY SINE Alu -1 310 1 2415 77 0 0 chr11 50004993 50005303 -98778169 - AluY SINE Alu -1 310 1 5684 152 31 20 chr11 50005658 50006806 -98776666 - L1 LINE L1 -753 5393 4233 198 0 0 0 chr11 50006806 50006828 -98776644 + (T)n Simple_repeat Simple_repeat 1 22 0 1216 174 0 5 chr11 50006839 50007046 -98776426 - AluJo SINE Alu -106 206 1 1667 160 32 0 chr11 50007053 50007335 -98776137 - L1 LINE L1 -1941 4205 3915 1246 155 74 61 chr11 50007339 50007411 -98776061 - L1 LINE L1 -2566 3580 3510 2224 90 7 3 chr11 50007411 50007721 -98775751 - AluSx SINE Alu -1 311 1 2077 125 0 0 chr11 50007721 50008009 -98775463 - AluSx SINE Alu -19 293 5 1246 155 74 61 chr11 50008009 50008328 -98775144 - L1 LINE L1 -2635 3511 3183 2062 104 3 10 chr11 50008329 50008628 -98774844 - AluSx SINE Alu -15 297 1 2107 74 0 7 chr11 50009417 50009727 -98773745 + AluY SINE Alu 1 308 0 471 206 85 6 chr11 50009839 50009855 -98773617 + L1MB2 LINE L1 6046 6059 -112 1481 170 59 3 chr11 50009855 50010143 -98773329 + AluJo SINE Alu 1 304 -8 471 206 85 6 chr11 50010143 50010251 -98773221 + L1MB2 LINE L1 6059 6164 -7 2158 83 3 0 chr11 50010263 50010553 -98772919 + AluY SINE Alu 1 291 -20 269 146 0 0 chr11 50010553 50010601 -98772871 + L1MB2 LINE L1 6110 6157 -14 884 294 156 18 chr11 50011162 50011598 -98771874 - L2 LINE L2 -2 3311 2816 2193 82 0 7 chr11 50011603 50011896 -98771576 - AluSc SINE Alu -18 291 1 2281 94 0 0 chr11 50012091 50012412 -98771060 - AluSq SINE Alu 0 313 1 1450 123 0 69 chr11 50014718 50014995 -98768477 - AluJo SINE Alu -13 299 42 1468 173 33 20 chr11 50015299 50015605 -98767867 - AluJo SINE Alu 0 312 3 1708 149 37 0 chr11 50015670 50015965 -98767507 - AluJo SINE Alu -6 306 1 2227 89 3 7 chr11 50015975 50016278 -98767194 - AluSc SINE Alu -7 302 1 812 118 17 0 chr11 50016625 50016744 -98766728 + AluSq/x SINE Alu 8 128 -184 29 0 0 0 chr11 50019082 50019111 -98764361 + AT_rich Low_complexity Low_complexity 1 29 0 29 101 0 0 chr11 50019152 50019251 -98764221 + AT_rich Low_complexity Low_complexity 1 99 0 341 170 28 66 chr11 50019333 50019515 -98763957 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 304 248 80 76 chr11 50019541 50019791 -98763681 - L1MCa LINE L1 -4219 2207 1957 218 135 27 27 chr11 50019866 50019940 -98763532 + (TA)n Simple_repeat Simple_repeat 1 74 0 206 215 13 51 chr11 50020016 50020095 -98763377 + (TTATA)n Simple_repeat Simple_repeat 2 77 0 381 192 54 12 chr11 50020141 50020308 -98763164 + (TA)n Simple_repeat Simple_repeat 1 174 0 307 272 82 58 chr11 50020351 50020557 -98762915 - L1MCa LINE L1 -4257 2169 1959 2265 47 0 4 chr11 50020774 50021053 -98762419 - AluY SINE Alu -15 296 19 274 283 100 61 chr11 50021468 50021648 -98761824 + MER5A DNA MER1_type 1 187 -2 573 293 59 40 chr11 50022100 50022353 -98761119 - MIR SINE MIR 0 262 5 2086 110 0 3 chr11 50022417 50022717 -98760755 - AluSg SINE Alu -11 299 1 5338 175 38 36 chr11 50022717 50023445 -98760027 - L1 LINE L1 -3764 3084 2359 2323 67 13 3 chr11 50023445 50023743 -98759729 - AluY SINE Alu -10 301 1 5338 175 38 36 chr11 50023743 50023813 -98759659 - L1 LINE L1 -4489 2359 2291 2121 107 7 7 chr11 50023813 50024113 -98759359 - AluSx SINE Alu -12 300 1 5338 175 38 36 chr11 50024113 50024431 -98759041 - L1 LINE L1 -4557 2291 1975 2048 115 7 3 chr11 50024431 50024735 -98758737 - AluSp SINE Alu -8 305 1 5338 175 38 36 chr11 50024735 50025081 -98758391 - L1 LINE L1 -4873 1975 1616 3044 161 43 88 chr11 50025371 50025484 -98757988 + L1MB2 LINE L1 5479 5596 -575 2189 92 16 0 chr11 50025484 50025788 -98757684 - AluY SINE Alu -2 309 1 3044 161 43 88 chr11 50025788 50025819 -98757653 + L1MB2 LINE L1 5596 5627 -544 2053 116 3 0 chr11 50025819 50026113 -98757359 + AluSx SINE Alu 1 295 -17 3044 161 43 88 chr11 50026113 50026693 -98756779 + L1MB2 LINE L1 5627 6171 0 2129 100 6 19 chr11 50026699 50027010 -98756462 + AluSx SINE Alu 1 307 -5 680 241 65 42 chr11 50027020 50027236 -98756236 + L2 LINE L2 2501 2721 -593 226 232 0 18 chr11 50027266 50027322 -98756150 + GA-rich Low_complexity Low_complexity 2 56 0 592 218 11 122 chr11 50027323 50027594 -98755878 + HAL1 LINE L1 1457 1697 -810 637 294 102 0 chr11 50027595 50027830 -98755642 - MIR SINE MIR -1 261 3 2076 117 3 0 chr11 50027856 50028155 -98755317 + AluSx SINE Alu 3 302 -10 2157 105 7 0 chr11 50028155 50028461 -98755011 + AluSg SINE Alu 1 308 -2 429 280 56 30 chr11 50028467 50028699 -98754773 + HAL1 LINE L1 2071 2308 -199 227 196 22 0 chr11 50028700 50028746 -98754726 + L2 LINE L2 3265 3311 -2 2229 103 3 0 chr11 50028812 50029122 -98754350 + AluY SINE Alu 1 311 0 336 308 113 63 chr11 50029182 50029403 -98754069 + HAL1b LINE L1 1115 1346 -2 1789 149 3 7 chr11 50029413 50029695 -98753777 + AluJb SINE Alu 1 281 -31 24 0 0 0 chr11 50029865 50029889 -98753583 + AT_rich Low_complexity Low_complexity 1 24 0 263 153 69 28 chr11 50030007 50030079 -98753393 + AluSq/x SINE Alu 64 138 -164 1076 191 164 19 chr11 50030079 50030341 -98753131 + AluSx SINE Alu 3 302 0 391 241 87 0 chr11 50030419 50030544 -98752928 + MLT1A2 LTR MaLR 239 363 -11 1350 237 48 43 chr11 50030556 50030982 -98752490 - L1MC4a LINE L1 -894 6914 6511 1864 125 7 10 chr11 50030982 50031277 -98752195 + AluY SINE Alu 1 294 -17 1350 237 48 43 chr11 50031277 50031322 -98752150 - L1MC4a LINE L1 -1297 6511 6468 517 218 8 88 chr11 50031499 50031656 -98751816 - MER31B LTR ERV1 -303 163 53 2725 16 0 0 chr11 50031656 50031962 -98751510 + AluYa5 SINE Alu 1 306 -5 517 218 8 88 chr11 50031962 50032009 -98751463 - MER31B LTR ERV1 -413 53 4 216 367 44 11 chr11 50032036 50032126 -98751346 - L3 LINE CR1 -441 1136 1044 375 288 60 50 chr11 50032170 50032395 -98751077 + MIR SINE MIR 32 259 -3 2050 143 0 6 chr11 50032446 50032760 -98750712 + AluSx SINE Alu 1 312 0 2185 39 25 3 chr11 50033017 50033300 -98750172 - AluY SINE Alu -22 289 1 193 294 59 0 chr11 50033462 50033530 -98749942 - L3 LINE CR1 -571 1006 935 23 33 0 0 chr11 50034298 50034328 -98749144 + AT_rich Low_complexity Low_complexity 1 30 0 280 253 135 41 chr11 50034662 50034832 -98748640 - MIR SINE MIR -76 186 1 451 259 92 6 chr11 50036322 50036475 -98746997 - MIR SINE MIR -65 143 23 2210 86 10 17 chr11 50036475 50036777 -98746695 - AluSp SINE Alu -13 300 1 451 259 92 6 chr11 50036777 50036801 -98746671 - MIR SINE MIR -185 23 2 2266 66 0 20 chr11 50036861 50037164 -98746308 - AluY SINE Alu -14 297 1 2276 93 0 6 chr11 50037939 50038250 -98745222 + AluSc SINE Alu 1 309 0 2124 125 3 0 chr11 50038330 50038627 -98744845 + AluSx SINE Alu 1 298 -14 2321 73 10 26 chr11 50039006 50039319 -98744153 - AluSx SINE Alu -4 308 1 229 283 135 29 chr11 50039634 50039804 -98743668 - MIR3 SINE MIR -72 136 3 353 268 92 72 chr11 50040356 50040398 -98743074 + MIR SINE MIR 82 122 -140 2488 62 0 0 chr11 50040398 50040703 -98742769 - AluY SINE Alu -6 305 1 353 268 92 72 chr11 50040703 50040813 -98742659 + MIR SINE MIR 122 237 -25 1885 135 23 3 chr11 50042798 50043102 -98740370 - AluSg SINE Alu 0 310 1 2041 119 17 3 chr11 50043262 50043555 -98739917 + AluSg SINE Alu 3 299 -11 661 301 81 43 chr11 50045888 50046306 -98737166 - L2 LINE L2 -3 3269 2836 2038 99 60 0 chr11 50046939 50047223 -98736249 + AluSx SINE Alu 1 301 -11 2059 75 0 4 chr11 50047223 50047488 -98735984 + AluSc SINE Alu 39 302 -7 237 65 0 0 chr11 50047915 50047946 -98735526 + (CAGGC)n Simple_repeat Simple_repeat 4 34 0 319 266 137 22 chr11 50048524 50048611 -98734861 + MIR SINE MIR 59 135 -127 2208 102 0 0 chr11 50048611 50048905 -98734567 - AluSx SINE Alu -5 307 14 319 266 137 22 chr11 50048905 50048956 -98734516 + MIR SINE MIR 135 213 -49 215 254 99 42 chr11 50049031 50049102 -98734370 - MIR3 SINE MIR -22 186 112 * 428 261 16 88 chr11 50049073 50049274 -98734198 + MIR SINE MIR 10 188 -20 255 280 53 0 chr11 50049306 50049381 -98734091 + L2 LINE L2 3191 3269 -3 418 264 123 26 chr11 50050719 50050874 -98732598 + MIR SINE MIR 23 192 -70 212 230 135 0 chr11 50051056 50051130 -98732342 + MIR SINE MIR 64 147 -115 223 288 0 36 chr11 50051328 50051439 -98732033 + GA-rich Low_complexity Low_complexity 4 110 0 49 18 0 0 chr11 50051645 50051701 -98731771 + GC_rich Low_complexity Low_complexity 1 56 0 251 288 13 4 chr11 50052363 50052536 -98730936 + G-rich Low_complexity Low_complexity 1 174 0 268 89 0 0 chr11 50052551 50052596 -98730876 + AluSp/q SINE Alu 252 296 -7 * 454 168 187 0 chr11 50052584 50052691 -98730781 - MER3 DNA MER1_type -65 144 18 2116 92 14 0 chr11 50052720 50053024 -98730448 - AluSq SINE Alu 0 308 1 222 347 53 11 chr11 50053114 50053209 -98730263 - MIR SINE MIR -136 126 28 1814 98 4 8 chr11 50053689 50053943 -98729529 - AluSg SINE Alu -14 296 44 359 279 63 0 chr11 50054040 50054151 -98729321 + MIR SINE MIR 57 174 -88 914 130 0 0 chr11 50054187 50054318 -98729154 + FLAM_C SINE Alu 1 131 -12 2307 57 0 17 chr11 50054323 50054622 -98728850 + AluY SINE Alu 1 294 -17 2061 105 3 3 chr11 50054816 50055102 -98728370 - AluSq SINE Alu -27 286 1 320 296 28 19 chr11 50055102 50055210 -98728262 - L1MC4a LINE L1 -1916 5892 5784 182 345 92 0 chr11 50055295 50055361 -98728111 - MIR SINE MIR -43 219 160 2196 101 3 0 chr11 50055361 50055657 -98727815 - AluSc SINE Alu -12 297 1 182 345 92 0 chr11 50055657 50055732 -98727740 - MIR SINE MIR -102 160 65 2105 133 0 3 chr11 50055989 50056298 -98727174 - AluSq SINE Alu -5 308 1 302 226 0 12 chr11 50056306 50056390 -98727082 - Charlie8 DNA MER1_type -2258 159 77 436 263 79 79 chr11 50056814 50056846 -98726626 + MIR SINE MIR 3 34 -228 2115 110 0 19 chr11 50056846 50057154 -98726318 + AluSx SINE Alu 1 302 -10 436 263 79 79 chr11 50057154 50057311 -98726161 + MIR SINE MIR 33 192 -70 1497 108 103 0 chr11 50057470 50057693 -98725779 + AluSx SINE Alu 1 246 -66 600 160 0 0 chr11 50057693 50057793 -98725679 - LTR12 LTR ERV1 -2 712 613 269 264 11 0 chr11 50057793 50057880 -98725592 - LTR30 LTR ERV1 -79 643 556 1432 127 96 11 chr11 50057911 50058171 -98725301 - LTR12 LTR ERV1 -432 282 1 303 102 0 37 chr11 50058171 50058240 -98725232 + AluSp/q SINE Alu 246 303 0 310 223 65 136 chr11 50058865 50059029 -98724443 - L2 LINE L2 -17 3296 3145 1884 131 7 3 chr11 50059029 50059319 -98724153 + AluJb SINE Alu 1 291 -21 310 223 65 136 chr11 50059319 50059338 -98724134 - L2 LINE L2 -168 3145 3126 1312 165 42 46 chr11 50059441 50059572 -98723900 + L1MB7 LINE L1 5556 5686 -488 1894 138 3 33 chr11 50059572 50059877 -98723595 - AluJo SINE Alu -16 296 1 1312 165 42 46 chr11 50059877 50060132 -98723340 + L1MB7 LINE L1 5686 5945 -229 1436 154 21 91 chr11 50060135 50060332 -98723140 - MLT1B LTR MaLR -34 356 147 2140 103 7 0 chr11 50060332 50060624 -98722848 + AluSg SINE Alu 1 294 -16 1436 154 21 91 chr11 50060624 50060640 -98722832 - MLT1B LTR MaLR -243 147 131 1866 118 11 14 chr11 50060640 50060919 -98722553 + AluSx SINE Alu 13 290 -22 1436 154 21 91 chr11 50060919 50061087 -98722385 - MLT1B LTR MaLR -259 131 1 591 208 28 21 chr11 50061091 50061235 -98722237 + L1MB7 LINE L1 5997 6141 -43 316 337 0 0 chr11 50061496 50061594 -98721878 - MIR SINE MIR -32 230 133 188 326 98 0 chr11 50061598 50061690 -98721782 - MIR3 SINE MIR -102 106 6 230 252 8 134 chr11 50063564 50063691 -98719781 - MIR SINE MIR -63 145 35 387 314 44 0 chr11 50063731 50063868 -98719604 + MIR SINE MIR 61 203 -59 * 801 253 103 64 chr11 50063849 50064303 -98719169 - L2 LINE L2 -6 3307 2836 2218 78 3 0 chr11 50064376 50064658 -98718814 - AluSq SINE Alu -30 283 1 309 315 36 18 chr11 50064741 50064906 -98718566 - L2 LINE L2 -768 2546 2379 565 169 0 0 chr11 50064942 50065031 -98718441 + AluJ/FLAM SINE Alu 1 89 -223 1639 179 7 3 chr11 50065068 50065353 -98718119 + AluJo SINE Alu 14 299 -13 245 279 12 12 chr11 50065355 50065441 -98718031 - L1MC3 LINE L1 -1059 6726 6641 765 347 87 31 chr11 50065441 50065657 -98717815 - L1MC4a LINE L1 -1230 6578 6375 2255 74 6 16 chr11 50065657 50065968 -98717504 - AluSc SINE Alu -1 308 1 765 347 87 31 chr11 50065968 50066041 -98717431 - L1MC4a LINE L1 -1433 6375 6308 2179 77 3 27 chr11 50066041 50066341 -98717131 - AluY SINE Alu -18 293 1 765 347 87 31 chr11 50066341 50066395 -98717077 - L1MC4a LINE L1 -1500 6308 6258 2144 125 3 3 chr11 50066395 50066706 -98716766 - AluY SINE Alu 0 311 1 1834 179 0 3 chr11 50066714 50067027 -98716445 - AluJo SINE Alu 0 312 1 765 347 87 31 chr11 50067027 50067122 -98716350 - L1MC4a LINE L1 -1556 6252 6104 193 298 21 32 chr11 50067122 50067216 -98716256 - L2 LINE L2 -927 2387 2295 208 256 24 85 chr11 50067217 50067299 -98716173 - L2 LINE L2 -1540 1774 1698 1872 155 13 3 chr11 50067323 50067632 -98715840 - AluJo SINE Alu 0 312 1 623 275 208 25 chr11 50067633 50067960 -98715512 - L2 LINE L2 -1603 1711 1325 468 222 46 9 chr11 50068179 50068287 -98715185 - L2 LINE L2 0 3313 3202 207 204 20 0 chr11 50068291 50068340 -98715132 + L2 LINE L2 2934 2983 -330 754 166 131 7 chr11 50068756 50068901 -98714571 - AluJo SINE Alu -149 163 1 379 218 79 10 chr11 50069071 50069172 -98714300 + MIR SINE MIR 21 128 -134 224 260 26 26 chr11 50069809 50069886 -98713586 - MIR SINE MIR -142 120 44 1754 156 0 36 chr11 50070374 50070493 -98712979 + AluJb SINE Alu 1 123 -189 222 37 0 0 chr11 50070493 50070520 -98712952 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 2052 125 0 0 chr11 50070522 50070810 -98712662 - AluSq SINE Alu -25 288 1 1754 156 0 36 chr11 50070810 50070994 -98712478 + AluJb SINE Alu 124 296 -16 368 244 134 8 chr11 50071038 50071157 -98712315 - MIR SINE MIR -55 207 74 2252 115 0 0 chr11 50071435 50071740 -98711732 - AluSx SINE Alu -7 305 1 606 217 85 0 chr11 50072080 50072209 -98711263 - FLAM_A SINE Alu -2 140 1 2135 98 3 0 chr11 50072212 50072497 -98710975 - AluSp SINE Alu -3 310 25 369 239 104 68 chr11 50072532 50072695 -98710777 + L1MC5 LINE L1 7759 7927 -34 362 210 0 12 chr11 50072715 50072796 -98710676 + L2 LINE L2 2542 2621 -693 2042 123 0 0 chr11 50072816 50073093 -98710379 - AluSx SINE Alu -27 285 9 187 357 0 0 chr11 50073097 50073153 -98710319 + L2 LINE L2 2606 2661 -653 1199 269 39 41 chr11 50073153 50073621 -98709851 + MLT2B1 LTR ERVL 1 467 -53 300 48 0 0 chr11 50073623 50073665 -98709807 - MADE1 DNA Mariner -2 78 37 2043 115 13 13 chr11 50073670 50073982 -98709490 + AluSp SINE Alu 1 312 -1 974 204 14 169 chr11 50074048 50074239 -98709233 - L1MD3 LINE L1 -1 8040 7821 1531 189 0 7 chr11 50074239 50074509 -98708963 + AluJo SINE Alu 1 268 -44 974 204 14 169 chr11 50074509 50074523 -98708949 - L1MD3 LINE L1 -220 7821 7806 1951 134 35 0 chr11 50074523 50074813 -98708659 + AluSx SINE Alu 3 302 -10 974 204 14 169 chr11 50074813 50074919 -98708553 - L1MD3 LINE L1 -235 7806 7685 2187 118 3 0 chr11 50074919 50075225 -98708247 + AluSx SINE Alu 1 307 -5 974 204 14 169 chr11 50075225 50075365 -98708107 - L1MD3 LINE L1 -356 7685 7525 2205 74 0 7 chr11 50075365 50075648 -98707824 + AluSx SINE Alu 1 281 -31 207 0 0 0 chr11 50075651 50075674 -98707798 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 974 204 14 169 chr11 50075674 50075831 -98707641 - L1MD3 LINE L1 -327 7714 7534 859 254 147 0 chr11 50075834 50076183 -98707289 + L2 LINE L2 2665 3053 -260 666 158 42 0 chr11 50076183 50076303 -98707169 - AluJb SINE Alu -12 300 176 411 173 0 0 chr11 50076404 50076514 -98706958 + G-rich Low_complexity Low_complexity 1 110 0 1284 170 107 26 chr11 50076648 50076919 -98706553 - AluJb SINE Alu -19 293 1 527 338 36 31 chr11 50077000 50077045 -98706427 - L1ME3A LINE L1 -216 5954 5911 1967 120 31 63 chr11 50077045 50077396 -98706076 + MER2 DNA MER2_type 1 340 -4 527 338 36 31 chr11 50077396 50077802 -98705670 - L1ME3A LINE L1 -259 5911 5495 331 299 18 32 chr11 50077905 50078122 -98705350 - L1ME3A LINE L1 -774 5468 5255 254 317 0 24 chr11 50078836 50078918 -98704554 + MIR SINE MIR 111 190 -72 454 161 0 21 chr11 50079100 50079193 -98704279 - MER69 DNA AcHobo -2 2524 2434 2057 92 7 11 chr11 50079200 50079482 -98703990 + AluSx SINE Alu 1 321 0 248 25 50 0 chr11 50079482 50079522 -98703950 + (CAAAA)n Simple_repeat Simple_repeat 1 180 0 2274 95 6 49 chr11 50079522 50079847 -98703625 + AluSx SINE Alu 2 312 0 261 253 53 13 chr11 50079851 50079926 -98703546 - MER69 DNA AcHobo -2430 96 19 409 250 150 14 chr11 50080267 50080407 -98703065 + MIR SINE MIR 19 177 -85 350 247 53 83 chr11 50080938 50080973 -98702499 + MIR SINE MIR 41 76 -175 2344 106 0 22 chr11 50080973 50081293 -98702179 - AluSq SINE Alu 0 313 1 350 247 53 83 chr11 50081293 50081429 -98702043 + MIR SINE MIR 76 214 -37 2265 92 7 0 chr11 50081822 50082145 -98701327 - AluSx SINE Alu 0 325 1 2189 100 3 35 chr11 50082145 50082455 -98701017 - AluSx SINE Alu -12 300 1 209 297 0 22 chr11 50085584 50085675 -98697797 + C-rich Low_complexity Low_complexity 2 90 0 1790 161 0 18 chr11 50086363 50086648 -98696824 + AluJo SINE Alu 1 280 -32 445 288 146 25 chr11 50087070 50087351 -98696121 - L2 LINE L2 -6 3266 2952 205 311 33 11 chr11 50087357 50087447 -98696025 + L2 LINE L2 2926 3017 -255 307 254 131 33 chr11 50087923 50088045 -98695427 + MIR SINE MIR 16 149 -113 521 296 67 6 chr11 50088447 50088626 -98694846 - MIR SINE MIR -60 202 13 352 329 73 6 chr11 50088656 50088820 -98694652 - MIR SINE MIR -12 250 76 207 339 69 0 chr11 50089552 50089682 -98693790 + MIR SINE MIR 61 199 -63 460 275 154 35 chr11 50089919 50090347 -98693125 + L2 LINE L2 2755 3219 -94 2151 131 20 0 chr11 50090990 50091296 -98692176 - AluSq SINE Alu -1 312 1 1755 161 42 3 chr11 50091342 50091486 -98691986 - AluJb SINE Alu -16 296 159 185 0 40 0 chr11 50091486 50091511 -98691961 + (CCA)n Simple_repeat Simple_repeat 1 26 0 1755 161 42 3 chr11 50091511 50091651 -98691821 - AluJb SINE Alu -153 159 1 707 163 0 0 chr11 50091695 50091818 -98691654 + FLAM_C SINE Alu 5 127 -6 2288 122 0 0 chr11 50091822 50092125 -98691347 + AluSq SINE Alu 1 303 -10 852 243 16 0 chr11 50093243 50093432 -98690040 + Charlie1a DNA MER1_type 56 247 -1208 1322 116 0 11 chr11 50093432 50093622 -98689850 - AluSg/x SINE Alu 0 310 123 2003 127 3 37 chr11 50093633 50093932 -98689540 - AluSq SINE Alu -24 289 1 2630 148 54 64 chr11 50093949 50094499 -98688973 + Charlie1a DNA MER1_type 252 795 -1966 1774 125 3 66 chr11 50094499 50094803 -98688669 - AluSx SINE Alu -7 305 21 2630 148 54 64 chr11 50094803 50094905 -98688567 + Charlie1a DNA MER1_type 795 897 -558 2190 105 10 3 chr11 50094948 50095253 -98688219 - AluSg SINE Alu -3 307 1 273 315 36 18 chr11 50095336 50095501 -98687971 - L2 LINE L2 -768 2546 2379 527 169 0 0 chr11 50095537 50095626 -98687846 + AluJ/FLAM SINE Alu 1 89 -223 1743 180 7 0 chr11 50095663 50095947 -98687525 + AluJo SINE Alu 14 299 -13 266 265 10 41 chr11 50095947 50096035 -98687437 - L1MC3 LINE L1 -1067 6718 6641 683 344 86 37 chr11 50096035 50096251 -98687221 - L1MC4a LINE L1 -1230 6578 6374 2360 71 10 16 chr11 50096251 50096561 -98686911 - AluSc SINE Alu -1 308 1 683 344 86 37 chr11 50096561 50096636 -98686836 - L1MC4a LINE L1 -1434 6374 6304 2318 70 3 27 chr11 50096636 50096934 -98686538 - AluY SINE Alu -20 291 1 683 344 86 37 chr11 50096934 50096988 -98686484 - L1MC4a LINE L1 -1504 6304 6254 2249 125 3 3 chr11 50096988 50097299 -98686173 - AluY SINE Alu 0 311 1 1920 179 0 3 chr11 50097307 50097620 -98685852 - AluJo SINE Alu 0 312 1 683 344 86 37 chr11 50097620 50097728 -98685744 - L1MC4a LINE L1 -1560 6248 6091 213 259 24 82 chr11 50097807 50097892 -98685580 - L2 LINE L2 -1537 1777 1698 1960 155 13 3 chr11 50097916 50098225 -98685247 - AluJo SINE Alu 0 312 1 555 260 211 28 chr11 50098226 50098553 -98684919 - L2 LINE L2 -1603 1711 1325 465 222 46 9 chr11 50098772 50098880 -98684592 - L2 LINE L2 0 3313 3202 196 204 20 0 chr11 50098884 50098933 -98684539 + L2 LINE L2 2934 2983 -330 692 167 132 7 chr11 50099354 50099498 -98683974 - AluJo SINE Alu -149 163 2 356 198 77 11 chr11 50099679 50099770 -98683702 + MIR SINE MIR 32 128 -134 184 247 39 39 chr11 50100409 50100486 -98682986 - MIR SINE MIR -142 120 44 1842 156 0 36 chr11 50100974 50101093 -98682379 + AluJb SINE Alu 1 123 -189 222 37 0 0 chr11 50101093 50101120 -98682352 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 2146 125 0 0 chr11 50101122 50101410 -98682062 - AluSq SINE Alu -25 288 1 1842 156 0 36 chr11 50101410 50101594 -98681878 + AluJb SINE Alu 124 296 -16 336 200 130 10 chr11 50101657 50101757 -98681715 - MIR SINE MIR -77 185 74 448 98 0 0 chr11 50101809 50101870 -98681602 + U6 snRNA snRNA 1 61 -46 2070 105 83 0 chr11 50101886 50102163 -98681309 + AluSx SINE Alu 1 300 -12 2373 91 0 0 chr11 50102386 50102684 -98680788 - AluSq SINE Alu -15 298 1 249 308 15 45 chr11 50102766 50102899 -98680573 - MIR3 SINE MIR -42 166 38 1726 122 0 0 chr11 50103253 50103490 -98679982 + AluSq SINE Alu 1 237 -76 1628 168 17 27 chr11 50104400 50104609 -98678863 - MLT1A1 LTR MaLR -3 362 155 2270 117 0 0 chr11 50104609 50104908 -98678564 - AluSx SINE Alu -12 300 2 1628 168 17 27 chr11 50104908 50104995 -98678477 - MLT1A1 LTR MaLR -210 155 69 1923 152 3 17 chr11 50105062 50105358 -98678114 + AluJb SINE Alu 7 298 -14 2228 108 0 7 chr11 50105365 50105662 -98677810 + AluSx SINE Alu 1 295 -17 2267 97 0 19 chr11 50106148 50106456 -98677016 + AluY SINE Alu 1 302 -9 1153 117 7 0 chr11 50106456 50106610 -98676862 + AluSq SINE Alu 134 288 -25 243 0 0 0 chr11 50106755 50106782 -98676690 + (T)n Simple_repeat Simple_repeat 1 27 0 1326 174 0 5 chr11 50106793 50107000 -98676472 - AluJo SINE Alu -106 206 1 1592 160 32 0 chr11 50107007 50107289 -98676183 - L1 LINE L1 -1941 5226 4936 12727 177 38 39 chr11 50107293 50107365 -98676107 - L1 LINE L1 -2566 4601 4530 2384 90 7 3 chr11 50107365 50107675 -98675797 - AluSx SINE Alu -1 311 1 2229 125 0 0 chr11 50107675 50107963 -98675509 - AluSx SINE Alu -19 293 5 12727 177 38 39 chr11 50107963 50108287 -98675185 - L1 LINE L1 -2636 4531 4208 2260 113 0 17 chr11 50108287 50108587 -98674885 - AluSq SINE Alu -18 295 1 12727 177 38 39 chr11 50108587 50109366 -98674106 - L1 LINE L1 -2959 4208 3430 2350 106 0 10 chr11 50109366 50109678 -98673794 - AluSg SINE Alu -1 309 1 12727 177 38 39 chr11 50109678 50110406 -98673066 - L1 LINE L1 -3737 3430 2703 2369 74 20 3 chr11 50110406 50110702 -98672770 - AluY SINE Alu -10 301 1 12727 177 38 39 chr11 50110702 50110772 -98672700 - L1 LINE L1 -4464 2703 2634 2276 107 7 7 chr11 50110772 50111072 -98672400 - AluSx SINE Alu -12 300 1 12727 177 38 39 chr11 50111072 50111390 -98672082 - L1 LINE L1 -4533 2634 2317 2207 115 7 3 chr11 50111390 50111694 -98671778 - AluSp SINE Alu -8 305 1 12727 177 38 39 chr11 50111694 50114015 -98669457 - L1 LINE L1 -4850 2317 1 1570 184 0 83 chr11 50114052 50114378 -98669094 - AluJo SINE Alu -13 299 1 266 152 0 0 chr11 50114808 50114854 -98668618 - AluY SINE Alu -2 306 261 2107 112 0 4 chr11 50114856 50115133 -98668339 - AluY SINE Alu -35 276 1 731 304 45 12 chr11 50115226 50115473 -98667999 - MIR SINE MIR -6 256 2 2441 104 0 0 chr11 50116998 50117306 -98666166 - AluSx SINE Alu -4 308 1 189 0 0 0 chr11 50117326 50117347 -98666125 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 2233 114 0 7 chr11 50117350 50117648 -98665824 - AluSx SINE Alu -16 296 1 2264 118 0 3 chr11 50117788 50118092 -98665380 + AluSq SINE Alu 1 303 -10 852 243 16 0 chr11 50119210 50119399 -98664073 + Charlie1a DNA MER1_type 56 247 -1208 1322 116 0 11 chr11 50119399 50119589 -98663883 - AluSg/x SINE Alu 0 310 123 2003 127 3 37 chr11 50119600 50119899 -98663573 - AluSq SINE Alu -24 289 1 2630 148 54 64 chr11 50119916 50120466 -98663006 + Charlie1a DNA MER1_type 252 795 -1966 1774 125 3 66 chr11 50120466 50120770 -98662702 - AluSx SINE Alu -7 305 21 2630 148 54 64 chr11 50120770 50120872 -98662600 + Charlie1a DNA MER1_type 795 897 -558 1387 113 42 47 chr11 50120892 50120915 -98662557 + AluJo SINE Alu 86 108 -204 2401 94 0 0 chr11 50120915 50121222 -98662250 - AluSg SINE Alu -3 307 1 1387 113 42 47 chr11 50121222 50121411 -98662061 + AluJo SINE Alu 108 297 -15 648 169 0 40 chr11 50121414 50121538 -98661934 - FLAM_C SINE Alu -23 120 2 436 120 27 0 chr11 50121541 50121616 -98661856 + Charlie1a DNA MER1_type 885 961 -494 995 198 0 0 chr11 50121622 50121784 -98661688 + FRAM SINE Alu 1 159 -17 1899 174 76 11 chr11 50121785 50122246 -98661226 + Charlie1a DNA MER1_type 964 1454 -1 2229 131 0 0 chr11 50122627 50122939 -98660533 - AluSx SINE Alu 0 312 1 2388 88 3 16 chr11 50122993 50123300 -98660172 - AluSx SINE Alu -9 303 1 205 279 0 0 chr11 50123311 50123354 -98660118 + (CA)n Simple_repeat Simple_repeat 2 44 0 1152 284 56 37 chr11 50123358 50123541 -98659931 - L1MC4a LINE L1 -1641 6167 5989 2412 93 0 6 chr11 50123541 50123853 -98659619 - AluSg SINE Alu 0 310 1 1152 284 56 37 chr11 50123853 50123898 -98659574 - L1MC4a LINE L1 -1819 5989 5946 2194 136 3 0 chr11 50123898 50124208 -98659264 - AluSq SINE Alu -2 311 1 1152 284 56 37 chr11 50124208 50124552 -98658920 - L1MC4a LINE L1 -1862 5946 5583 560 247 120 31 chr11 50124533 50124792 -98658680 - L1MC5 LINE L1 -420 7541 7260 * 2332 95 3 0 chr11 50124939 50125234 -98658238 - AluSx SINE Alu -16 296 1 2486 109 0 0 chr11 50125960 50126272 -98657200 - AluSx SINE Alu 0 312 1 21 0 0 0 chr11 50126276 50126297 -98657175 + AT_rich Low_complexity Low_complexity 1 21 0 2174 137 0 3 chr11 50126297 50126597 -98656875 - AluSx SINE Alu -13 299 1 434 239 79 125 chr11 50126732 50126869 -98656603 - L1ME4a LINE L1 -104 6017 5898 2271 91 3 16 chr11 50126869 50127177 -98656295 + AluSx SINE Alu 1 304 -8 434 239 79 125 chr11 50127177 50127319 -98656153 - L1ME4a LINE L1 -223 5898 5751 2314 111 0 10 chr11 50127340 50127646 -98655826 + AluSx SINE Alu 2 304 -8 1046 116 7 0 chr11 50127670 50127808 -98655664 + AluJo SINE Alu 1 139 -173 1553 206 4 0 chr11 50127814 50128112 -98655360 + AluJb SINE Alu 9 307 0 376 312 35 12 chr11 50128112 50128282 -98655190 - L1ME4a LINE L1 -2101 5707 5534 188 289 22 67 chr11 50128405 50128495 -98654977 - MIR SINE MIR -94 114 29 556 344 49 33 chr11 50128578 50128883 -98654589 - L2 LINE L2 -2 3270 2961 462 281 139 19 chr11 50128865 50129175 -98654297 - L2 LINE L2 -747 2567 2221 * 782 258 77 28 chr11 50129208 50129456 -98654016 - MIR SINE MIR -2 260 1 2349 71 3 17 chr11 50129492 50129788 -98653684 + AluY SINE Alu 1 292 -19 27 0 0 0 chr11 50129911 50129938 -98653534 + AT_rich Low_complexity Low_complexity 1 27 0 2480 93 0 0 chr11 50130122 50130422 -98653050 + AluSx SINE Alu 1 300 -12 875 153 56 0 chr11 50130433 50130592 -98652880 + AluJb SINE Alu 144 296 -16 196 104 62 0 chr11 50132152 50132200 -98651272 + (CGTG)n Simple_repeat Simple_repeat 1 51 0 368 344 113 9 chr11 50133182 50133394 -98650078 + MIR SINE MIR 2 235 -27 195 296 99 0 chr11 50138056 50138127 -98645345 + MIR3 SINE MIR 120 197 -11 2129 117 7 0 chr11 50138224 50138524 -98644948 - AluSx SINE Alu -10 302 1 339 250 40 20 chr11 50141394 50141494 -98641978 - MIR SINE MIR -147 115 14 2145 118 0 7 chr11 50141732 50142029 -98641443 - AluSx SINE Alu -17 295 1 2330 86 3 9 chr11 50142478 50142793 -98640679 - AluSp SINE Alu 0 313 1 2318 89 3 10 chr11 50143372 50143686 -98639786 + AluSx SINE Alu 1 312 0 219 104 10 25 chr11 50143968 50144014 -98639458 - MIR SINE MIR -62 146 99 383 298 121 0 chr11 50144176 50144317 -98639155 - MIR SINE MIR -4 258 101 361 291 111 7 chr11 50144306 50144513 -98638959 + MIR SINE MIR 25 260 -2 * 242 119 0 51 chr11 50145121 50145180 -98638292 - FLAM_A SINE Alu 0 133 78 200 345 0 0 chr11 50146747 50146802 -98636670 - MIR3 SINE MIR -35 173 119 459 185 138 39 chr11 50147056 50147186 -98636286 - L1ME2 LINE L1 0 6164 6022 920 157 5 0 chr11 50147263 50147488 -98635984 + (CA)n Simple_repeat Simple_repeat 1 226 0 2385 77 0 10 chr11 50147551 50147863 -98635609 + AluY SINE Alu 3 311 0 557 280 83 0 chr11 50147918 50148086 -98635386 - MIR SINE MIR -61 201 20 313 231 3 42 chr11 50148836 50149124 -98634348 + (TCTCTG)n Simple_repeat Simple_repeat 1 276 0 241 336 77 0 chr11 50149539 50149643 -98633829 - MIR SINE MIR -70 192 81 2098 109 3 0 chr11 50150918 50151238 -98632234 - AluSx SINE Alu 0 312 18 276 255 57 38 chr11 50151531 50151637 -98631835 - MIR SINE MIR -59 149 42 657 240 64 0 chr11 50151769 50151940 -98631532 + MIR SINE MIR 33 214 -48 2205 97 3 0 chr11 50151968 50152256 -98631216 - AluSx SINE Alu -23 289 1 277 324 56 19 chr11 50152674 50152782 -98630690 - L2 LINE L2 -5 3267 3156 398 280 37 0 chr11 50154447 50154554 -98628918 - MIR SINE MIR -106 156 46 2019 113 7 3 chr11 50155790 50156074 -98627398 + AluSx SINE Alu 1 285 -27 25 0 0 0 chr11 50156074 50156099 -98627373 + AT_rich Low_complexity Low_complexity 1 25 0 253 319 88 0 chr11 50156149 50156240 -98627232 - MER91B DNA MER1_type -10 180 82 350 259 17 60 chr11 50156448 50156564 -98626908 + MIR3 SINE MIR 82 192 -16 2220 87 0 10 chr11 50157293 50157592 -98625880 - AluY SINE Alu -15 296 1 186 304 0 0 chr11 50158252 50158321 -98625151 - L2 LINE L2 -292 2980 2912 633 291 11 5 chr11 50158744 50158929 -98624543 - MIR SINE MIR -38 224 39 206 348 67 15 chr11 50159300 50159435 -98624037 - MIR3 SINE MIR -3 205 64 249 288 15 0 chr11 50160124 50160190 -98623282 + tRNA-Met-i tRNA tRNA 1 67 -8 369 313 182 17 chr11 50160195 50160371 -98623101 + MIR SINE MIR 2 206 -56 1549 128 7 97 chr11 50160378 50160676 -98622796 + AluJo SINE Alu 1 271 -41 56 39 0 0 chr11 50160676 50160753 -98622719 + AT_rich Low_complexity Low_complexity 1 77 0 2199 117 3 0 chr11 50160754 50161062 -98622410 + AluJb SINE Alu 1 309 -3 404 256 38 30 chr11 50161532 50161665 -98621807 + MIR3 SINE MIR 39 172 -36 252 0 0 0 chr11 50161713 50161741 -98621731 + (CAT)n Simple_repeat Simple_repeat 3 30 0 201 207 0 35 chr11 50162208 50162266 -98621206 + G-rich Low_complexity Low_complexity 2 57 0 232 233 17 0 chr11 50162853 50162973 -98620499 + (CA)n Simple_repeat Simple_repeat 1 122 0 441 278 17 6 chr11 50162984 50163160 -98620312 + (CA)n Simple_repeat Simple_repeat 2 179 0 256 260 14 0 chr11 50163176 50163249 -98620223 + (CA)n Simple_repeat Simple_repeat 1 74 0 393 300 6 6 chr11 50163284 50163464 -98620008 + (CA)n Simple_repeat Simple_repeat 1 180 0 421 277 17 6 chr11 50163522 50163699 -98619773 + (CA)n Simple_repeat Simple_repeat 1 179 0 328 291 24 0 chr11 50163861 50163988 -98619484 + (CA)n Simple_repeat Simple_repeat 1 130 0 424 288 11 11 chr11 50164006 50164183 -98619289 + (CA)n Simple_repeat Simple_repeat 1 177 0 187 240 19 13 chr11 50164263 50164417 -98619055 + (CA)n Simple_repeat Simple_repeat 1 155 0 241 265 35 29 chr11 50164607 50165069 -98618403 + (CTCA)n Simple_repeat Simple_repeat 4 174 0 425 276 0 24 chr11 50164664 50164737 -98618735 + (CA)n Simple_repeat Simple_repeat 1 74 -92 2304 75 10 0 chr11 50164737 50165030 -98618442 - AluSq SINE Alu -17 296 1 425 276 0 24 chr11 50165030 50165126 -98618346 + (CA)n Simple_repeat Simple_repeat 74 166 0 329 327 0 0 chr11 50165151 50165264 -98618208 + (CA)n Simple_repeat Simple_repeat 1 113 0 440 294 0 22 chr11 50165285 50165469 -98618003 + (CA)n Simple_repeat Simple_repeat 1 180 0 257 319 0 32 chr11 50165514 50165699 -98617773 + (CA)n Simple_repeat Simple_repeat 1 179 0 377 257 6 39 chr11 50165729 50165908 -98617564 + (CA)n Simple_repeat Simple_repeat 1 173 0 337 305 43 12 chr11 50166326 50166490 -98616982 + MER91A DNA MER1_type 23 191 -5 355 304 146 6 chr11 50167313 50167471 -98616001 - MIR SINE MIR -70 192 13 515 286 163 10 chr11 50167483 50167679 -98615793 + MIR SINE MIR 31 256 -6 2170 82 7 3 chr11 50167711 50168002 -98615470 + AluSc SINE Alu 1 292 -17 2435 64 3 3 chr11 50168005 50168316 -98615156 + AluY SINE Alu 1 311 0 785 265 24 11 chr11 50169170 50169408 -98614064 + MIR SINE MIR 26 262 0 22 0 0 0 chr11 50169411 50169433 -98614039 + AT_rich Low_complexity Low_complexity 1 22 0 1592 176 8 8 chr11 50169466 50169733 -98613739 + AluJo SINE Alu 12 278 -34 2246 108 7 0 chr11 50169733 50170040 -98613432 - AluSg SINE Alu -1 309 1 21 36 0 0 chr11 50170093 50170121 -98613351 + AT_rich Low_complexity Low_complexity 1 28 0 422 160 191 0 chr11 50170272 50170366 -98613106 + L2 LINE L2 3202 3313 0 2304 85 0 3 chr11 50170405 50170700 -98612772 + AluSx SINE Alu 1 294 -18 747 294 102 0 chr11 50170817 50171052 -98612420 - MIR SINE MIR -1 261 3 2219 97 3 3 chr11 50171078 50171376 -98612096 + AluSq SINE Alu 3 300 -13 499 315 175 11 chr11 50171392 50171798 -98611674 + L2 LINE L2 2670 3185 -128 1779 107 64 14 chr11 50171798 50172079 -98611393 - AluSc SINE Alu -14 295 1 499 315 175 11 chr11 50172079 50172211 -98611261 + L2 LINE L2 3185 3294 -19 201 224 0 0 chr11 50172253 50172311 -98611161 + (TGGG)n Simple_repeat Simple_repeat 2 59 0 559 283 19 7 chr11 50172472 50172638 -98610834 - MIR SINE MIR -57 205 38 2276 73 0 3 chr11 50172759 50173048 -98610424 + AluSg SINE Alu 1 288 -22 2161 123 7 0 chr11 50173054 50173355 -98610117 + AluSx SINE Alu 1 303 -9 935 239 68 0 chr11 50174650 50174855 -98608617 + MER20 DNA MER1_type 1 219 0 330 241 167 9 chr11 50174953 50175061 -98608411 + MIR SINE MIR 16 140 -68 254 184 18 55 chr11 50176211 50176374 -98607098 + CT-rich Low_complexity Low_complexity 3 159 0 320 295 29 35 chr11 50177231 50177404 -98606068 + (CCCCAG)n Simple_repeat Simple_repeat 2 173 0 538 358 0 0 chr11 50178970 50179149 -98604323 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 593 219 7 0 chr11 50179192 50179347 -98604125 + (TCCA)n Simple_repeat Simple_repeat 1 156 0 1310 146 21 44 chr11 50179360 50179715 -98603757 - L1PB4 LINE L1 -237 5919 5670 894 182 0 0 chr11 50179719 50179997 -98603475 + (TCCA)n Simple_repeat Simple_repeat 1 278 0 426 212 0 0 chr11 50180016 50180115 -98603357 + (TCCA)n Simple_repeat Simple_repeat 3 101 0 197 260 117 65 chr11 50180122 50180199 -98603273 - L2 LINE L2 -33 3239 3159 239 0 32 0 chr11 50180240 50180271 -98603201 + (TTG)n Simple_repeat Simple_repeat 2 33 0 227 299 0 31 chr11 50180732 50180771 -98602701 + (TTCA)n Simple_repeat Simple_repeat 3 42 -54 2222 101 23 3 chr11 50180771 50181682 -98601790 - AluSq SINE Alu 0 917 1 3529 118 30 43 chr11 50180812 50181171 -98602301 - L1PB4 LINE L1 -5 6151 5789 186 71 0 0 chr11 50181171 50181199 -98602273 + (TA)n Simple_repeat Simple_repeat 1 28 0 3529 118 30 43 chr11 50181199 50181684 -98601788 - L1PB4 LINE L1 -367 5789 5619 1803 181 0 13 chr11 50181684 50181983 -98601489 - AluJb SINE Alu -17 295 1 227 299 0 31 chr11 50181983 50182060 -98601412 + (TTCA)n Simple_repeat Simple_repeat 43 96 0 3529 118 30 43 chr11 50181983 50182044 -98601428 - L1PB4 LINE L1 -537 5619 5559 276 202 48 24 chr11 50182942 50183026 -98600446 - MIR SINE MIR -82 126 41 289 288 29 34 chr11 50183052 50183300 -98600172 + GA-rich Low_complexity Low_complexity 1 246 0 22 0 0 0 chr11 50183534 50183556 -98599916 + AT_rich Low_complexity Low_complexity 1 22 0 2643 45 0 16 chr11 50183728 50184039 -98599433 + AluY SINE Alu 1 306 -5 1387 87 10 0 chr11 50184150 50184356 -98599116 - L1MA3 LINE L1 0 6305 6098 225 208 0 0 chr11 50184359 50184412 -98599060 - L1ME LINE L1 -302 5819 5767 393 279 74 105 chr11 50184416 50184485 -98598987 - L1ME3A LINE L1 -15 6155 6085 2273 88 3 19 chr11 50184485 50184793 -98598679 + AluY SINE Alu 1 303 -8 393 279 74 105 chr11 50184793 50184854 -98598618 - L1ME3A LINE L1 -85 6085 6024 2535 67 0 10 chr11 50184854 50185168 -98598304 + AluY SINE Alu 1 311 0 393 279 74 105 chr11 50185168 50185265 -98598207 - L1ME3A LINE L1 -146 6024 5934 2166 122 0 3 chr11 50185266 50185569 -98597903 - AluSg SINE Alu -2 308 7 246 182 73 0 chr11 50185690 50185745 -98597727 - L1ME3A LINE L1 -320 5850 5792 2256 119 0 0 chr11 50185745 50186048 -98597424 - AluSx SINE Alu -8 304 2 791 133 8 8 chr11 50186090 50186210 -98597262 - AluJb SINE Alu -25 287 168 485 224 112 20 chr11 50186210 50186362 -98597110 - L1ME3A LINE L1 -2040 5768 5603 1973 136 0 34 chr11 50186362 50186397 -98597075 - AluSx SINE Alu 0 312 277 216 0 0 0 chr11 50186397 50186421 -98597051 + (TTTTA)n Simple_repeat Simple_repeat 4 27 0 1973 136 0 34 chr11 50186421 50186708 -98596764 - AluSx SINE Alu -35 277 1 755 163 0 0 chr11 50186712 50186835 -98596637 - FLAM_C SINE Alu -6 127 5 42 0 0 0 chr11 50187166 50187208 -98596264 + GC_rich Low_complexity Low_complexity 1 42 0 299 237 102 14 chr11 50187889 50188066 -98595406 - MIR SINE MIR -4 258 13 2020 147 0 3 chr11 50188768 50189068 -98594404 + AluJb SINE Alu 6 304 -8 574 117 0 0 chr11 50189383 50189460 -98594012 + AluS SINE Alu 2 78 -235 253 100 40 0 chr11 50189878 50189928 -98593544 + (TA)n Simple_repeat Simple_repeat 2 53 0 553 224 0 0 chr11 50190124 50190222 -98593250 + FLAM_A SINE Alu 1 98 -44 36 40 0 0 chr11 50190222 50190272 -98593200 + AT_rich Low_complexity Low_complexity 1 50 0 2332 110 10 0 chr11 50190276 50190585 -98592887 + AluSx SINE Alu 1 312 0 2086 116 35 0 chr11 50191814 50192099 -98591373 + AluSx SINE Alu 1 295 -17 2321 97 3 0 chr11 50192101 50192410 -98591062 + AluSg SINE Alu 1 310 0 2000 109 33 4 chr11 50192418 50192716 -98590756 + AluSg SINE Alu 1 306 0 554 194 155 0 chr11 50192857 50192986 -98590486 - MIR SINE MIR -25 237 89 899 150 86 0 chr11 50193018 50193158 -98590314 + FRAM SINE Alu 4 155 -11 236 75 0 25 chr11 50193271 50193300 -98590172 + (GA)n Simple_repeat Simple_repeat 2 31 -9 2206 125 20 3 chr11 50193300 50193603 -98589869 + AluSx SINE Alu 1 308 -4 236 75 0 25 chr11 50193603 50193613 -98589859 + (GA)n Simple_repeat Simple_repeat 31 40 0 2261 104 7 0 chr11 50193702 50194000 -98589472 - AluSq SINE Alu -13 300 1 2145 142 7 0 chr11 50194000 50194303 -98589169 - AluJb SINE Alu -5 307 3 1200 100 0 58 chr11 50194317 50194507 -98588965 - AluSg/x SINE Alu 0 312 134 2170 114 10 0 chr11 50194507 50194804 -98588668 - AluSx SINE Alu -3 309 10 1491 207 13 3 chr11 50195112 50195417 -98588055 + AluSx SINE Alu 1 308 -4 2319 50 4 4 chr11 50195488 50195766 -98587706 - AluY SINE Alu -15 296 19 286 283 100 61 chr11 50196181 50196361 -98587111 + MER5A DNA MER1_type 1 187 -2 569 293 59 40 chr11 50196813 50197066 -98586406 - MIR SINE MIR 0 262 5 2283 117 0 0 chr11 50197130 50197429 -98586043 - AluSg SINE Alu -11 299 1 239 132 59 0 chr11 50197499 50197567 -98585905 + (TCCA)n Simple_repeat Simple_repeat 3 74 0 1665 143 0 12 chr11 50198012 50198290 -98585182 + AluSq SINE Alu 43 317 0 292 276 92 0 chr11 50198408 50198484 -98584988 + L2 LINE L2 3186 3268 -4 239 341 0 0 chr11 50198496 50198584 -98584888 + (TGGA)n Simple_repeat Simple_repeat 3 90 0 282 56 0 0 chr11 50198630 50198666 -98584806 + (TGGA)n Simple_repeat Simple_repeat 1 36 0 2357 114 0 0 chr11 50198707 50199005 -98584467 + AluSx SINE Alu 1 298 -14 521 192 7 93 chr11 50199030 50199181 -98584291 + L1MB7 LINE L1 5451 5588 -583 802 107 0 0 chr11 50199298 50199401 -98584071 - AluSp SINE Alu -193 120 18 1037 179 107 32 chr11 50199701 50199981 -98583491 + L1MB7 LINE L1 5872 6172 -12 1751 159 35 21 chr11 50199981 50200271 -98583201 - AluSx SINE Alu -13 299 6 1916 141 7 3 chr11 50200456 50200746 -98582726 - AluSx SINE Alu -21 291 1 1841 135 73 7 chr11 50201199 50201488 -98581984 + AluSx SINE Alu 1 308 -4 2160 121 0 0 chr11 50201523 50201813 -98581659 + AluSp SINE Alu 1 290 -23 2180 83 38 0 chr11 50201902 50202192 -98581280 - AluY SINE Alu -10 301 1 1581 150 83 0 chr11 50202434 50202700 -98580772 - AluJb SINE Alu -24 288 1 1723 175 14 7 chr11 50202816 50203108 -98580364 + AluJb SINE Alu 1 294 -18 299 98 0 0 chr11 50203173 50203214 -98580258 + LTR23 LTR ERV1 320 360 -77 456 290 111 28 chr11 50203619 50203836 -98579636 + MIR SINE MIR 12 246 -16 244 43 21 43 chr11 50206883 50206930 -98576542 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 231 204 0 0 chr11 50207514 50207568 -98575904 + A-rich Low_complexity Low_complexity 1 54 0 306 115 0 0 chr11 50209102 50209154 -98574318 + (T)n Simple_repeat Simple_repeat 1 52 0 189 0 0 0 chr11 50210780 50210801 -98572671 + (CAAAAA)n Simple_repeat Simple_repeat 4 24 0 1725 163 36 4 chr11 50211379 50211655 -98571817 - AluJo SINE Alu -14 298 14 237 215 116 66 chr11 50211680 50211801 -98571671 - MIR SINE MIR -50 212 86 676 226 113 5 chr11 50212436 50212622 -98570850 + L1ME1 LINE L1 5942 6147 -19 2296 100 27 0 chr11 50212719 50213019 -98570453 - AluSg SINE Alu -2 308 1 827 231 84 44 chr11 50213072 50213393 -98570079 + L2 LINE L2 2872 3205 -108 417 258 105 79 chr11 50214735 50214822 -98568650 - MIR SINE MIR 0 262 179 1793 168 34 7 chr11 50214822 50215114 -98568358 - AluJo SINE Alu -12 300 1 417 258 105 79 chr11 50215114 50215255 -98568217 - MIR SINE MIR -83 179 28 2291 87 0 3 chr11 50215260 50215548 -98567924 - AluY SINE Alu -24 287 1 2426 88 10 0 chr11 50218912 50219209 -98564263 - AluSx SINE Alu -12 300 1 1320 149 133 12 chr11 50219577 50219818 -98563654 + AluSg1 SINE Alu 3 272 -37 207 0 0 0 chr11 50219819 50219842 -98563630 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 2140 113 3 55 chr11 50219922 50220251 -98563221 - AluSx SINE Alu 0 312 1 2368 63 0 17 chr11 50220508 50220808 -98562664 - AluY SINE Alu -16 295 1 1630 100 0 5 chr11 50221583 50221793 -98561679 + AluSc SINE Alu 1 209 -100 837 142 0 0 chr11 50221794 50221907 -98561565 + AluSg/x SINE Alu 78 190 -122 492 174 0 0 chr11 50221907 50221993 -98561479 + AluS SINE Alu 226 311 -1 407 241 87 0 chr11 50222065 50222190 -98561282 + MLT1A2 LTR MaLR 239 363 -11 1514 221 159 0 chr11 50222218 50222626 -98560846 - L1MC4 LINE L1 -1066 6976 6504 1900 123 4 0 chr11 50222628 50222889 -98560583 + AluY SINE Alu 1 262 -49 2145 121 7 23 chr11 50223289 50223620 -98559852 + AluSx SINE Alu 2 312 0 1686 152 7 19 chr11 50224367 50224637 -98558835 + AluJb SINE Alu 23 289 -23 324 217 239 43 chr11 50224927 50225019 -98558453 - L2 LINE L2 0 3272 3163 1612 179 64 7 chr11 50225416 50225696 -98557776 + AluJo SINE Alu 1 296 -16 310 152 0 0 chr11 50225943 50225989 -98557483 + MIR SINE MIR 24 69 -193 2440 75 3 25 chr11 50226023 50226343 -98557129 - AluSp SINE Alu 0 313 1 392 241 46 0 chr11 50226409 50226517 -98556955 + MIR SINE MIR 78 190 -72 1670 175 45 7 chr11 50226544 50226836 -98556636 - AluJb SINE Alu -9 303 1 2126 111 10 0 chr11 50226951 50227239 -98556233 - AluSc SINE Alu -16 293 3 2184 106 7 3 chr11 50227244 50227537 -98555935 - AluSc SINE Alu -15 294 1 352 147 0 67 chr11 50227542 50227617 -98555855 - AluJ/FRAM SINE Alu 0 302 233 2135 130 7 0 chr11 50228014 50228306 -98555166 - AluSx SINE Alu -18 294 1 2389 99 10 0 chr11 50231754 50232057 -98551415 - AluSq SINE Alu -7 306 1 2182 124 7 0 chr11 50232247 50232546 -98550926 - AluSq SINE Alu -12 301 1 2328 105 3 3 chr11 50232678 50232983 -98550489 - AluSx SINE Alu -7 305 1 2160 109 20 0 chr11 50232985 50233279 -98550193 - AluSx SINE Alu -12 300 1 227 372 53 9 chr11 50233548 50233661 -98549811 + L2 LINE L2 3141 3258 -14 1842 162 0 10 chr11 50233805 50234101 -98549371 - AluJb SINE Alu -19 293 1 2064 115 3 14 chr11 50234267 50234563 -98548909 + AluSx SINE Alu 1 293 -19 1840 124 0 25 chr11 50235081 50235356 -98548116 + AluSx SINE Alu 43 310 -2 271 260 0 0 chr11 50235408 50235485 -98547987 + MER5C DNA MER1_type 92 168 -156 529 121 349 23 chr11 50236600 50236732 -98546740 - MER3 DNA MER1_type 0 209 35 746 169 7 7 chr11 50236734 50236870 -98546602 - AluJo SINE Alu -176 136 1 1877 115 27 50 chr11 50237051 50237389 -98546083 + L1MB7 LINE L1 5836 6165 -19 1592 163 8 0 chr11 50239989 50240241 -98543231 + AluJo SINE Alu 46 299 -13 354 118 0 0 chr11 50291287 50291338 -98492134 - Alu SINE Alu -248 51 1 1265 184 13 21 chr11 50291339 50291573 -98491899 + AluJo SINE Alu 80 311 -1 465 231 0 56 chr11 50291584 50291727 -98491745 + L1MB8 LINE L1 5929 6063 -115 2115 129 3 10 chr11 50291729 50292039 -98491433 + AluSx SINE Alu 1 308 -4 2102 114 55 0 chr11 50292063 50292352 -98491120 + AluSq SINE Alu 1 305 -8 1059 83 8 0 chr11 50292369 50292501 -98490971 + AluSx SINE Alu 1 133 -180 2196 115 13 0 chr11 50292522 50292826 -98490646 + AluSq SINE Alu 1 308 -5 2142 112 30 0 chr11 50292842 50293138 -98490334 + AluSx SINE Alu 1 305 -7 393 39 0 0 chr11 50294013 50294064 -98489408 + (TG)n Simple_repeat Simple_repeat 1 51 0 23 33 0 0 chr11 50295142 50295172 -98488300 + GC_rich Low_complexity Low_complexity 1 30 0 316 247 0 0 chr11 50296241 50296314 -98487158 - MER5A DNA MER1_type -6 183 111 1282 109 0 16 chr11 50296421 50296633 -98486839 + AluSx SINE Alu 117 310 0 1962 114 44 0 chr11 50296635 50296942 -98486530 + AluSx SINE Alu 1 319 0 1506 188 3 38 chr11 50296942 50297234 -98486238 - AluJo SINE Alu -30 282 1 355 242 229 25 chr11 50297236 50297338 -98486134 - L1ME LINE L1 -297 5824 5744 1722 203 3 3 chr11 50297338 50297649 -98485823 + AluJo SINE Alu 1 311 -1 355 242 229 25 chr11 50297649 50297703 -98485769 - L1ME LINE L1 -377 5744 5636 2155 112 31 3 chr11 50297803 50298097 -98485375 - AluSx SINE Alu -10 302 1 21 0 0 0 chr11 50298106 50298127 -98485345 + AT_rich Low_complexity Low_complexity 1 21 0 219 326 225 0 chr11 50298521 50298610 -98484862 - L2 LINE L2 -9 3263 3155 977 226 8 102 chr11 50298676 50298859 -98484613 - L2 LINE L2 0 3313 3181 2382 77 0 10 chr11 50298859 50299159 -98484313 + AluSx SINE Alu 1 297 -15 977 226 8 102 chr11 50299159 50299346 -98484126 - L2 LINE L2 -132 3181 2978 207 0 0 0 chr11 50299889 50299912 -98483560 + (CAA)n Simple_repeat Simple_repeat 2 24 0 30 0 0 0 chr11 50299995 50300025 -98483447 + AT_rich Low_complexity Low_complexity 1 30 0 1278 170 0 5 chr11 50300492 50300698 -98482774 + AluJo SINE Alu 87 291 -21 2058 134 13 0 chr11 50300698 50301019 -98482453 + AluSx SINE Alu 1 312 0 1986 119 7 7 chr11 50301021 50301321 -98482151 + AluSc SINE Alu 1 300 0 2305 94 17 0 chr11 50301758 50302055 -98481417 - AluSx SINE Alu -8 304 3 316 265 29 39 chr11 50302190 50302292 -98481180 + L3 LINE CR1 1462 1562 -15 2063 145 0 19 chr11 50302936 50303071 -98480401 + AluSx SINE Alu 1 137 -175 2005 132 3 7 chr11 50303071 50303359 -98480113 + AluSx SINE Alu 1 287 -25 213 65 0 0 chr11 50303359 50303390 -98480082 + (CATA)n Simple_repeat Simple_repeat 2 32 0 2063 145 0 19 chr11 50303390 50303563 -98479909 + AluSx SINE Alu 135 304 -8 2382 106 0 3 chr11 50303749 50304061 -98479411 - AluSq SINE Alu -2 311 1 2196 88 3 7 chr11 50304176 50304485 -98478987 + AluY SINE Alu 1 308 0 1739 91 14 5 chr11 50304841 50305062 -98478410 - AluSx SINE Alu -89 223 1 2423 65 0 3 chr11 50305082 50305373 -98478099 - AluSc SINE Alu -19 290 1 501 240 132 0 chr11 50305923 50306101 -98477371 + MIR SINE MIR 7 206 -56 252 236 56 28 chr11 50306587 50306659 -98476813 + MER91A DNA MER1_type 122 195 -1 348 248 215 16 chr11 50306793 50306914 -98476558 - MIR3 SINE MIR -61 147 3 193 298 0 0 chr11 50307053 50307100 -98476372 - L3b LINE CR1 -246 1337 1291 183 184 0 0 chr11 50308112 50308150 -98475322 + G-rich Low_complexity Low_complexity 4 41 0 1941 91 12 8 chr11 50309978 50310232 -98473240 + AluSc SINE Alu 1 255 -54 237 300 29 14 chr11 50310291 50310361 -98473111 + MIR SINE MIR 8 78 -184 412 249 126 79 chr11 50310558 50310631 -98472841 - LTR16C LTR ERVL -71 420 352 2422 53 3 20 chr11 50310631 50310933 -98472539 + AluY SINE Alu 1 297 -14 412 249 126 79 chr11 50310933 50311176 -98472296 - LTR16C LTR ERVL -139 352 89 2241 100 34 3 chr11 50311300 50311591 -98471881 + AluSx SINE Alu 1 300 -12 632 132 9 0 chr11 50311591 50311697 -98471775 + MLT1D LTR MaLR 397 503 -2 2195 105 0 27 chr11 50311721 50312016 -98471456 + AluSg SINE Alu 1 287 -23 2338 95 23 0 chr11 50312236 50312542 -98470930 + AluSp SINE Alu 1 313 0 2095 133 0 22 chr11 50312916 50313233 -98470239 - AluSx SINE Alu -1 311 2 685 170 58 29 chr11 50313501 50313672 -98469800 - LTR49 LTR ERV1 -3 592 417 232 143 0 0 chr11 50313667 50313709 -98469763 - LTR29 LTR ERV1 -198 424 383 * 574 137 29 240 chr11 50313714 50313918 -98469554 - AluJb SINE Alu -23 289 129 1217 135 0 0 chr11 50314223 50314416 -98469056 + AluSg/x SINE Alu 119 311 0 564 186 0 0 chr11 50314416 50314502 -98468970 - AluJ/FLAM SINE Alu -225 87 2 2020 152 42 85 chr11 50314505 50314558 -98468914 - L1MB7 LINE L1 -249 5935 5881 2001 154 3 10 chr11 50314558 50314863 -98468609 - AluSq SINE Alu -10 303 1 2419 83 3 0 chr11 50314863 50315162 -98468310 - AluSp SINE Alu -12 301 1 2020 152 42 85 chr11 50315162 50315634 -98467838 - L1MB7 LINE L1 -301 5883 5432 2535 63 3 0 chr11 50315641 50315943 -98467529 - AluY SINE Alu -7 304 2 2450 84 0 0 chr11 50315952 50316250 -98467222 - AluY SINE Alu -13 298 1 357 177 94 0 chr11 50316252 50316348 -98467124 - L1MD3 LINE L1 -6 7989 7885 1282 161 48 22 chr11 50316358 50316631 -98466841 - L1MB7 LINE L1 -10 6174 5895 734 137 17 0 chr11 50316685 50316802 -98466670 - AluSg/x SINE Alu -13 299 181 1761 158 41 3 chr11 50316804 50317096 -98466376 - AluJb SINE Alu -9 303 1 2253 124 0 0 chr11 50317096 50317394 -98466078 - AluSx SINE Alu -13 299 1 1441 177 117 0 chr11 50317484 50317749 -98465723 + AluJo SINE Alu 1 296 -6 1699 121 113 4 chr11 50317749 50318006 -98465466 + AluSc SINE Alu 1 285 -24 274 64 140 6 chr11 50318006 50318163 -98465309 + (TA)n Simple_repeat Simple_repeat 1 178 0 207 48 48 24 chr11 50318229 50318271 -98465201 + (TTATA)n Simple_repeat Simple_repeat 2 44 0 381 255 72 82 chr11 50318300 50318625 -98464847 - L1MCa LINE L1 -4223 2203 1948 311 283 17 58 chr11 50318520 50318640 -98464832 + L1MC4 LINE L1 6589 6703 -1339 * 190 0 67 0 chr11 50318654 50318684 -98464788 + (TA)n Simple_repeat Simple_repeat 2 33 0 2233 113 0 3 chr11 50318957 50319250 -98464222 + AluSq SINE Alu 1 292 -21 1327 143 5 9 chr11 50319280 50319490 -98463982 + 7SLRNA srpRNA srpRNA 1 209 -111 2193 84 3 7 chr11 50319985 50320281 -98463191 - AluSg SINE Alu -15 295 1 1212 116 0 33 chr11 50321333 50321514 -98461958 - AluSx SINE Alu -137 175 1 28 61 0 0 chr11 50321643 50321692 -98461780 + AT_rich Low_complexity Low_complexity 1 49 0 2562 60 0 0 chr11 50322221 50322522 -98460950 - AluY SINE Alu -10 301 1 1552 179 36 29 chr11 50322671 50322979 -98460493 + AluJo SINE Alu 1 310 -2 2243 113 0 7 chr11 50323337 50323638 -98459834 + AluSc SINE Alu 1 299 -10 1957 137 23 20 chr11 50324101 50324407 -98459065 - AluSx SINE Alu -5 307 1 204 97 0 0 chr11 50324482 50324513 -98458959 + (TCTA)n Simple_repeat Simple_repeat 1 31 0 1738 163 22 0 chr11 50324513 50324790 -98458682 - AluSx SINE Alu -23 289 7 2116 139 0 0 chr11 50324821 50325124 -98458348 + AluY SINE Alu 1 303 -8 1339 134 0 15 chr11 50325297 50325499 -98457973 - AluSq SINE Alu -114 199 1 2447 90 0 0 chr11 50325617 50325918 -98457554 + AluSx SINE Alu 6 306 -6 1825 149 23 10 chr11 50326419 50326720 -98456752 + AluJb SINE Alu 1 305 -7 28 29 0 0 chr11 50330682 50330717 -98452755 + AT_rich Low_complexity Low_complexity 1 35 0 2320 128 0 0 chr11 50330725 50331037 -98452435 + AluSx SINE Alu 1 312 0 2183 106 3 0 chr11 50331083 50331365 -98452107 + AluSq SINE Alu 1 283 -30 278 57 0 0 chr11 50331370 50331405 -98452067 + AluSp/q SINE Alu 249 283 -20 2135 122 17 0 chr11 50331442 50331736 -98451736 + AluSx SINE Alu 1 299 -13 2542 48 3 0 chr11 50331736 50332031 -98451441 + AluY SINE Alu 1 296 -15 1928 147 20 0 chr11 50332176 50332468 -98451004 - AluJb SINE Alu -13 299 2 2249 66 70 0 chr11 50332477 50332763 -98450709 - AluY SINE Alu -5 306 1 661 113 0 0 chr11 50332809 50332906 -98450566 - U5 snRNA snRNA -19 97 1 2328 97 3 3 chr11 50332995 50333294 -98450178 - AluSx SINE Alu -13 299 1 666 279 97 8 chr11 50335934 50336171 -98447301 - MIR SINE MIR 0 262 5 203 39 0 0 chr11 50336246 50336272 -98447200 + MIR SINE MIR 27 52 -156 360 0 0 0 chr11 50336301 50336341 -98447131 + (CA)n Simple_repeat Simple_repeat 2 41 0 216 0 0 0 chr11 50336363 50336387 -98447085 + (CA)n Simple_repeat Simple_repeat 2 25 0 584 337 19 41 chr11 50337358 50337463 -98446009 + MIR SINE MIR 1 107 -155 2324 98 0 10 chr11 50337463 50337768 -98445704 - AluSc SINE Alu -7 302 1 584 337 19 41 chr11 50337768 50337929 -98445543 + MIR SINE MIR 107 261 -1 387 318 123 71 chr11 50337917 50338298 -98445174 - L2 LINE L2 -20 3252 2852 * 520 236 183 19 chr11 50338878 50339040 -98444432 + MIR SINE MIR 12 217 -45 1812 163 0 3 chr11 50339040 50339322 -98444150 + AluJb SINE Alu 14 294 -18 520 236 183 19 chr11 50339322 50339367 -98444105 + MIR SINE MIR 217 253 -9 1391 144 5 14 chr11 50339495 50339710 -98443762 - AluJb SINE Alu -99 213 1 2314 107 3 0 chr11 50341038 50341337 -98442135 - AluSp SINE Alu -13 300 1 1975 140 14 3 chr11 50341338 50341631 -98441841 - AluSx SINE Alu -16 296 1 2448 78 13 0 chr11 50341836 50342145 -98441327 - AluSp SINE Alu 0 313 1 1789 160 25 14 chr11 50342153 50342435 -98441037 - AluJb SINE Alu -24 288 4 193 167 33 44 chr11 50343547 50343637 -98439835 + (CCCTG)n Simple_repeat Simple_repeat 1 89 0 1683 149 66 21 chr11 50344932 50345094 -98438378 - AluSx SINE Alu -10 302 120 1733 124 105 0 chr11 50345094 50345361 -98438111 - AluSx SINE Alu -17 295 1 1683 149 66 21 chr11 50345361 50345487 -98437985 - AluSx SINE Alu -192 120 1 1043 150 0 0 chr11 50345545 50345698 -98437774 + AluSg/x SINE Alu 156 308 -2 752 179 0 30 chr11 50345698 50345832 -98437640 + AluJo/FRAM SINE Alu 138 267 -45 1694 142 0 34 chr11 50345860 50346128 -98437344 - AluJo SINE Alu -15 297 39 839 202 12 18 chr11 50346128 50346296 -98437176 - AluJ SINE Alu -9 303 137 214 209 149 0 chr11 50346487 50346554 -98436918 - MIR3 SINE MIR -48 160 84 2168 110 0 0 chr11 50346670 50346951 -98436521 - AluSq SINE Alu -32 281 1 672 173 38 23 chr11 50347188 50347321 -98436151 - AluJ SINE Alu -176 136 2 1270 162 5 15 chr11 50347359 50347563 -98435909 - AluJb SINE Alu -15 297 96 1986 75 0 20 chr11 50347685 50347939 -98435533 - AluSq SINE Alu -7 306 58 244 229 21 0 chr11 50348346 50348394 -98435078 - L3 LINE CR1 -10 1567 1519 226 279 16 0 chr11 50348347 50348408 -98435064 - MIR3 SINE MIR -15 193 132 * 1984 128 35 0 chr11 50348427 50348715 -98434757 - AluSp SINE Alu -13 300 3 744 191 0 29 chr11 50348799 50348967 -98434505 - FLAM_C SINE Alu 0 133 1 789 180 98 41 chr11 50349154 50349348 -98434124 + AluJb SINE Alu 2 206 -106 2251 100 13 0 chr11 50351914 50352215 -98431257 - AluSx SINE Alu -6 306 2 207 0 0 0 chr11 50352218 50352241 -98431231 + (TTG)n Simple_repeat Simple_repeat 2 24 0 577 114 143 9 chr11 50352243 50352348 -98431124 - AluSg/x SINE Alu -31 279 161 2438 73 0 10 chr11 50352509 50352809 -98430663 - AluSx SINE Alu -13 299 3 1260 121 6 0 chr11 50352830 50353003 -98430469 - AluSp SINE Alu 0 313 140 2617 63 0 0 chr11 50353006 50353307 -98430165 - AluY SINE Alu -10 301 1 434 272 172 6 chr11 50353765 50353934 -98429538 - MIR SINE MIR -10 252 56 675 243 238 19 chr11 50354129 50354499 -98428973 - MLT1K LTR MaLR -33 555 105 267 331 62 38 chr11 50354773 50354933 -98428539 - MIR SINE MIR -85 177 14 1064 301 137 56 chr11 50355791 50356696 -98426776 + L3 LINE CR1 2 979 -598 2484 62 13 3 chr11 50356756 50357064 -98426408 + AluY SINE Alu 1 311 0 883 246 105 102 chr11 50357136 50357668 -98425804 - L1MC4a LINE L1 -1835 5973 5440 1946 138 0 39 chr11 50357685 50357996 -98425476 - AluJb SINE Alu -13 299 1 2343 107 3 0 chr11 50358098 50358407 -98425065 + AluSp SINE Alu 1 310 -3 222 342 44 35 chr11 50358408 50358522 -98424950 + L2 LINE L2 2804 2918 -396 386 265 300 0 chr11 50358524 50358724 -98424748 - MIR SINE MIR -1 261 2 348 179 0 0 chr11 50358910 50358977 -98424495 - FRAM SINE Alu -49 117 51 2523 50 17 0 chr11 50359029 50359329 -98424143 + AluY SINE Alu 1 305 -6 802 189 0 0 chr11 50359545 50359677 -98423795 + FLAM_A SINE Alu 2 133 0 2151 88 0 88 chr11 50359684 50360024 -98423448 + AluSg SINE Alu 1 310 0 637 258 237 108 chr11 50360430 50360490 -98422982 - MLT1G3 LTR MaLR 0 595 544 2384 98 0 10 chr11 50360490 50360797 -98422675 + AluSx SINE Alu 1 304 -8 637 258 237 108 chr11 50360797 50360971 -98422501 - MLT1G3 LTR MaLR -51 544 394 503 232 125 65 chr11 50360971 50361086 -98422386 + MER45A DNA AcHobo 1 131 -1450 2011 139 0 17 chr11 50361086 50361249 -98422223 - AluSx SINE Alu -16 296 139 2437 88 3 0 chr11 50361249 50361546 -98421926 - AluSx SINE Alu -14 298 1 2011 139 0 17 chr11 50361546 50361683 -98421789 - AluSx SINE Alu -173 139 1 503 232 125 65 chr11 50361683 50361735 -98421737 + MER45A DNA AcHobo 131 178 0 637 258 237 108 chr11 50361735 50361977 -98421495 - MLT1G3 LTR MaLR -201 394 1 2296 76 17 17 chr11 50363319 50363620 -98419852 - AluSq SINE Alu -12 301 1 380 206 0 93 chr11 50364188 50364295 -98419177 - MIR3 SINE MIR -25 183 87 477 314 30 30 chr11 50364350 50364519 -98418953 + MIR SINE MIR 4 172 -90 235 225 141 28 chr11 50364618 50364760 -98418712 - L1ME4a LINE L1 -3 6118 5961 1396 162 77 8 chr11 50364843 50365102 -98418370 - AluSx SINE Alu -33 279 3 292 184 0 23 chr11 50365114 50365205 -98418267 - AluJb SINE Alu -171 131 74 3513 181 36 71 chr11 50365208 50365238 -98418234 - L1MB3 LINE L1 -1 6182 6152 2428 102 0 0 chr11 50365238 50365541 -98417931 + AluSg SINE Alu 1 303 -7 3513 181 36 71 chr11 50365541 50366467 -98417005 - L1MB3 LINE L1 -31 6152 5195 2416 96 0 0 chr11 50366467 50366769 -98416703 - AluSx SINE Alu -10 302 1 3513 181 36 71 chr11 50366769 50367045 -98416427 - L1MB3 LINE L1 -988 5195 4995 2234 104 0 0 chr11 50367045 50367334 -98416138 - AluSg SINE Alu -21 289 1 1594 182 12 24 chr11 50367334 50367653 -98415819 - L1MB4 LINE L1 -39 6141 5825 2355 86 30 0 chr11 50367653 50367957 -98415515 - AluSq SINE Alu 0 313 1 1594 182 12 24 chr11 50367957 50367977 -98415495 - L1MB4 LINE L1 -355 5825 5806 2250 119 7 7 chr11 50368259 50368569 -98414903 - AluSp SINE Alu -2 311 2 1720 109 140 0 chr11 50368822 50369067 -98414405 + AluSp SINE Alu 1 287 -16 206 31 0 31 chr11 50369067 50369099 -98414373 + (CCCCCG)n Simple_repeat Simple_repeat 4 34 0 1720 109 140 0 chr11 50369099 50369118 -98414354 + AluSp SINE Alu 287 302 -1 2061 68 8 0 chr11 50369183 50369435 -98414037 + AluY SINE Alu 41 294 -17 450 36 0 0 chr11 50369444 50369500 -98413972 + (CA)n Simple_repeat Simple_repeat 2 57 0 1024 132 0 0 chr11 50369520 50369656 -98413816 + AluJo SINE Alu 1 136 -176 2085 134 0 3 chr11 50369905 50370203 -98413269 - AluSx SINE Alu -15 297 1 908 123 0 68 chr11 50370204 50370350 -98413122 - AluSq/x SINE Alu -176 136 1 1951 123 4 0 chr11 50370367 50370635 -98412837 - AluSp SINE Alu -9 304 36 337 270 161 0 chr11 50370905 50371042 -98412430 + MIR SINE MIR 104 262 0 182 254 97 88 chr11 50371037 50371151 -98412321 + MIR SINE MIR 124 238 -24 * 552 164 7 158 chr11 50371575 50371721 -98411751 - FLAM_A SINE Alu -12 130 7 1766 157 11 14 chr11 50371938 50372224 -98411248 - AluJb SINE Alu -21 291 7 1479 158 95 15 chr11 50372229 50372502 -98410970 - AluJo SINE Alu -17 295 1 2018 140 13 3 chr11 50372555 50372855 -98410617 + AluSx SINE Alu 1 303 -9 2270 103 7 0 chr11 50372972 50373264 -98410208 - AluSq SINE Alu -19 294 1 1341 120 0 0 chr11 50373526 50373718 -98409754 + AluSg/x SINE Alu 119 310 0 288 296 0 0 chr11 50374204 50374275 -98409197 - L2 LINE L2 -5 3308 3238 275 261 152 45 chr11 50374421 50374488 -98408984 - MIR SINE MIR -2 260 202 2292 102 0 0 chr11 50374488 50374781 -98408691 + AluSx SINE Alu 5 297 -15 275 261 152 45 chr11 50374781 50374932 -98408540 - MIR SINE MIR -60 202 9 1715 152 3 88 chr11 50376192 50376346 -98407126 + AluJb SINE Alu 1 114 -198 2344 66 14 3 chr11 50376346 50376634 -98406838 + AluY SINE Alu 1 291 -20 1715 152 3 88 chr11 50376634 50376809 -98406663 + AluJb SINE Alu 114 302 -10 1676 156 11 26 chr11 50376972 50377242 -98406230 - AluJo SINE Alu -20 292 27 236 53 26 0 chr11 50377273 50377311 -98406161 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 233 171 0 0 chr11 50377311 50377346 -98406126 - AluJo SINE Alu -97 36 2 1744 126 63 7 chr11 50377866 50378168 -98405304 + AluSx SINE Alu 1 317 0 823 127 16 0 chr11 50378520 50378646 -98404826 - AluSp/q SINE Alu -8 305 178 2047 125 21 3 chr11 50378646 50378935 -98404537 - AluSx SINE Alu -18 294 1 555 115 62 10 chr11 50378956 50379052 -98404420 - HY3 scRNA scRNA 0 101 1 1164 184 31 9 chr11 50379089 50379312 -98404160 - AluJo SINE Alu 0 312 85 2146 78 19 0 chr11 50379693 50379961 -98403511 - AluSq SINE Alu -16 297 25 1582 148 0 46 chr11 50380025 50380288 -98403184 - AluSq SINE Alu -18 295 45 1644 140 126 7 chr11 50380417 50380688 -98402784 - AluSx SINE Alu -9 303 1 2295 114 0 6 chr11 50380730 50381045 -98402427 - AluSp SINE Alu 0 313 1 189 0 0 0 chr11 50382982 50383003 -98400469 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 238 200 18 36 chr11 50383177 50383232 -98400240 + MIR SINE MIR 30 83 -179 185 200 0 0 chr11 50383251 50383281 -98400191 + MIR SINE MIR 212 241 -21 2187 126 10 3 chr11 50383284 50383593 -98399879 - AluSx SINE Alu -1 311 1 290 137 0 0 chr11 50383664 50383715 -98399757 + AluJo SINE Alu 86 136 -166 947 150 0 0 chr11 50383717 50383850 -98399622 + AluJb SINE Alu 1 133 -179 2222 100 0 0 chr11 50383865 50384187 -98399285 + AluSx SINE Alu 12 333 0 1282 32 0 6 chr11 50384191 50384347 -98399125 + L1PA4 LINE L1 5998 6152 -3 638 200 0 83 chr11 50384363 50384508 -98398964 + AluSc SINE Alu 116 248 -61 1153 164 26 39 chr11 50384508 50384739 -98398733 + AluJo SINE Alu 85 312 0 675 292 0 49 chr11 50384776 50385002 -98398470 + MIR SINE MIR 48 262 0 2160 131 3 10 chr11 50385479 50385793 -98397679 - AluSx SINE Alu 0 312 1 724 200 8 0 chr11 50385798 50385923 -98397549 - FLAM_A SINE Alu -7 126 1 1731 199 24 3 chr11 50385925 50386222 -98397250 - AluJb SINE Alu -9 303 1 203 271 0 0 chr11 50386697 50386756 -98396716 + A-rich Low_complexity Low_complexity 1 59 0 2055 117 3 16 chr11 50387147 50387456 -98396016 + AluSx SINE Alu 1 305 -7 2049 131 0 0 chr11 50387828 50388140 -98395332 + AluSx SINE Alu 1 312 0 1236 107 0 0 chr11 50388140 50388308 -98395164 + AluSg/x SINE Alu 133 300 -12 1386 182 20 8 chr11 50388578 50388831 -98394641 + AluJo SINE Alu 1 256 -56 40 14 0 41 chr11 50388838 50388865 -98394607 + AT_rich Low_complexity Low_complexity 1 28 -42 1771 182 0 3 chr11 50388865 50389178 -98394294 + AluSx SINE Alu 1 312 0 40 14 0 41 chr11 50389178 50389199 -98394273 + AT_rich Low_complexity Low_complexity 28 48 -22 2151 103 0 10 chr11 50389199 50389499 -98393973 + AluSx SINE Alu 1 297 -15 40 14 0 41 chr11 50389499 50389522 -98393950 + AT_rich Low_complexity Low_complexity 48 70 0 232 174 22 0 chr11 50390020 50390066 -98393406 - Alu SINE Alu -116 185 139 180 0 0 0 chr11 50390728 50390748 -98392724 + (GGGGA)n Simple_repeat Simple_repeat 2 21 0 1272 165 0 18 chr11 50391085 50391309 -98392163 - AluJb SINE Alu -16 296 77 24 0 0 0 chr11 50391312 50391336 -98392136 + AT_rich Low_complexity Low_complexity 1 24 0 776 171 0 0 chr11 50391347 50391464 -98392008 + FLAM_C SINE Alu 1 117 -16 1634 94 60 113 chr11 50391471 50391789 -98391683 - AluSx SINE Alu -11 301 1 805 147 0 22 chr11 50391799 50391935 -98391537 - FLAM_C SINE Alu 0 133 1 2173 107 0 0 chr11 50392076 50392374 -98391098 - AluSx SINE Alu -14 298 1 390 159 0 0 chr11 50392664 50392727 -98390745 - Alu SINE Alu 0 302 240 860 219 198 8 chr11 50392788 50393030 -98390442 - AluJo SINE Alu -19 293 6 784 147 55 43 chr11 50393090 50393253 -98390219 - AluJb SINE Alu -14 298 134 2270 93 0 10 chr11 50394026 50394339 -98389133 - AluSx SINE Alu -2 310 1 335 289 56 61 chr11 50394997 50395177 -98388295 + MIR SINE MIR 2 180 -82 24 0 0 0 chr11 50395477 50395501 -98387971 + AT_rich Low_complexity Low_complexity 1 24 0 1925 90 82 0 chr11 50395501 50395768 -98387704 - AluSx SINE Alu -23 289 1 2248 112 0 0 chr11 50396588 50396901 -98386571 + AluSq SINE Alu 1 313 0 2272 50 13 23 chr11 50397819 50398121 -98385351 - AluY SINE Alu -12 299 1 2122 122 0 10 chr11 50398159 50398463 -98385009 - AluSg SINE Alu -9 301 1 2240 74 7 3 chr11 50398578 50398875 -98384597 - AluY SINE Alu -13 298 1 198 0 0 0 chr11 50398971 50398993 -98384479 + (TA)n Simple_repeat Simple_repeat 2 23 0 2365 88 0 0 chr11 50398993 50399300 -98384172 - AluSp SINE Alu -6 307 1 1716 169 0 14 chr11 50399548 50399843 -98383629 - AluJo SINE Alu -21 291 1 2200 86 3 7 chr11 50400233 50400536 -98382936 - AluY SINE Alu -9 302 1 1561 169 28 7 chr11 50400547 50400837 -98382635 - AluJb SINE Alu -16 296 1 2053 126 0 0 chr11 50401308 50401609 -98381863 + AluSx SINE Alu 1 301 -11 2003 129 7 0 chr11 50401614 50401908 -98381564 + AluSx SINE Alu 1 296 -16 2104 112 0 13 chr11 50401910 50402223 -98381249 + AluSq SINE Alu 1 309 -4 838 141 0 0 chr11 50402237 50402365 -98381107 + FLAM_C SINE Alu 7 134 -9 1853 103 3 97 chr11 50402423 50402752 -98380720 - AluSp SINE Alu -15 298 1 2018 79 43 4 chr11 50403743 50404020 -98379452 + AluY SINE Alu 2 289 -22 1736 146 7 24 chr11 50404107 50404401 -98379071 - AluJb SINE Alu -23 289 1 745 189 0 8 chr11 50404420 50404547 -98378925 - AluJb SINE Alu -185 127 2 1952 110 4 4 chr11 50404559 50404840 -98378632 - AluSx SINE Alu -20 292 12 2128 84 13 3 chr11 50404896 50405195 -98378277 + AluSg SINE Alu 1 302 -8 2210 85 3 0 chr11 50405501 50405795 -98377677 + AluSg SINE Alu 1 295 -15 1982 138 0 0 chr11 50405970 50406274 -98377198 - AluSx SINE Alu -8 304 1 701 182 23 15 chr11 50406289 50406421 -98377051 - AluJo SINE Alu -178 134 2 2286 82 0 7 chr11 50406549 50406853 -98376619 + AluY SINE Alu 1 302 -9 1345 204 7 28 chr11 50406956 50407245 -98376227 - AluJo SINE Alu -19 293 11 2261 92 0 7 chr11 50407351 50407656 -98375816 - AluSq SINE Alu -10 303 1 33 43 0 0 chr11 50407658 50407705 -98375767 + AT_rich Low_complexity Low_complexity 1 47 0 2290 93 0 6 chr11 50407895 50408208 -98375264 + AluY SINE Alu 1 311 0 2314 69 13 0 chr11 50408277 50408581 -98374891 + AluY SINE Alu 1 308 -3 2009 98 3 7 chr11 50409566 50409885 -98373587 + AluSq SINE Alu 1 318 0 2201 108 0 0 chr11 50410062 50410367 -98373105 + AluSq SINE Alu 6 310 -3 1247 163 22 47 chr11 50410408 50410728 -98372744 - AluSq SINE Alu -1 312 1 2081 103 17 0 chr11 50410899 50411201 -98372271 - AluSg SINE Alu -3 307 1 568 85 24 0 chr11 50412214 50412296 -98371176 + AluSp/q SINE Alu 215 298 -15 955 247 30 17 chr11 50412522 50412753 -98370719 - MIR SINE MIR 0 262 29 2300 84 0 3 chr11 50412929 50413240 -98370232 - AluY SINE Alu -1 310 1 1556 152 4 15 chr11 50413421 50413684 -98369788 - AluJb SINE Alu -52 260 1 181 356 127 17 chr11 50414035 50414153 -98369319 + L2 LINE L2 3122 3252 -20 1981 63 45 21 chr11 50414333 50414620 -98368852 - AluY SINE Alu -16 295 2 1771 103 8 8 chr11 50414678 50414987 -98368485 - AluSx SINE Alu 0 329 21 1990 102 46 3 chr11 50416264 50416548 -98366924 + AluSq SINE Alu 1 296 -17 573 261 71 14 chr11 50416713 50416924 -98366548 - L1MC4a LINE L1 -1980 5828 5606 1690 154 50 3 chr11 50416929 50417227 -98366245 - AluJo SINE Alu 0 312 1 2040 131 0 7 chr11 50417302 50417608 -98365864 + AluSx SINE Alu 1 304 -8 1291 115 60 5 chr11 50417990 50418190 -98365282 - AluSg/x SINE Alu -7 305 95 596 184 0 0 chr11 50418190 50418299 -98365173 + AluSg/x SINE Alu 200 308 -1 232 284 170 38 chr11 50418362 50418477 -98364995 + MIR SINE MIR 25 153 -63 1643 163 13 29 chr11 50419324 50419631 -98363841 - AluJo SINE Alu -10 302 1 1937 137 17 3 chr11 50419980 50420279 -98363193 + AluSx SINE Alu 1 303 -9 2401 48 14 0 chr11 50420450 50420740 -98362732 + AluY SINE Alu 1 294 -17 902 144 0 20 chr11 50421565 50421711 -98361761 + AluSq/x SINE Alu 1 143 -169 198 0 0 0 chr11 50421730 50421752 -98361720 + (A)n Simple_repeat Simple_repeat 1 22 0 1891 129 0 4 chr11 50421754 50422053 -98361419 + AluY SINE Alu 3 300 0 1697 164 0 10 chr11 50422055 50422347 -98361125 + AluSx SINE Alu 3 291 -21 436 239 275 0 chr11 50422457 50422595 -98360877 + MIR SINE MIR 81 256 -6 1618 178 10 16 chr11 50423002 50423305 -98360167 - AluJb SINE Alu -11 301 1 1806 138 14 3 chr11 50423417 50423708 -98359764 + AluJb SINE Alu 1 294 -18 1479 135 24 111 chr11 50424126 50424460 -98359012 - AluYb8 SINE Alu -13 305 1 900 112 0 0 chr11 50424460 50424585 -98358887 - AluSq/x SINE Alu -177 136 12 827 219 0 0 chr11 50424651 50424797 -98358675 - FRAM SINE Alu -30 146 1 1917 99 14 3 chr11 50425135 50425419 -98358053 + AluSq SINE Alu 1 287 -26 207 0 0 0 chr11 50425504 50425527 -98357945 + (TG)n Simple_repeat Simple_repeat 2 24 0 194 71 0 71 chr11 50425591 50425633 -98357839 + (T)n Simple_repeat Simple_repeat 1 39 0 1176 152 95 0 chr11 50427657 50427754 -98355718 - MER30 DNA MER1_type 0 230 144 2191 69 0 16 chr11 50427754 50428057 -98355415 - AluSc SINE Alu -11 298 1 1176 152 95 0 chr11 50428057 50428169 -98355303 - MER30 DNA MER1_type -86 144 1 1790 109 84 28 chr11 50428248 50428533 -98354939 - AluSq SINE Alu -12 301 1 1969 101 10 42 chr11 50428543 50428850 -98354622 - AluY SINE Alu -14 297 1 2178 109 0 3 chr11 50429280 50429583 -98353889 - AluSx SINE Alu -10 302 1 1538 171 30 7 chr11 50429594 50429898 -98353574 - AluJb SINE Alu -1 311 1 1516 182 7 7 chr11 50429997 50430293 -98353179 - AluJo SINE Alu 0 312 17 2250 80 0 0 chr11 50431361 50431649 -98351823 - AluY SINE Alu -21 290 3 264 59 0 0 chr11 50431666 50431700 -98351772 + (CA)n Simple_repeat Simple_repeat 2 35 0 1789 90 7 67 chr11 50432365 50432664 -98350808 - AluSx SINE Alu -21 291 11 656 248 227 13 chr11 50433625 50433683 -98349789 + L2 LINE L2 3024 3068 -245 2312 77 0 10 chr11 50433683 50433994 -98349478 - AluSg SINE Alu -2 308 1 656 248 227 13 chr11 50433994 50434173 -98349299 + L2 LINE L2 3068 3312 -1 273 287 167 20 chr11 50434322 50434472 -98349000 + MIR SINE MIR 41 212 -50 2149 117 0 3 chr11 50434506 50434815 -98348657 + AluSx SINE Alu 1 308 -4 1883 128 20 10 chr11 50434889 50435185 -98348287 - AluJb SINE Alu -11 301 3 407 214 45 0 chr11 50435416 50435505 -98347967 + MER91C DNA MER1_type 2 94 -46 2271 65 7 0 chr11 50435717 50436007 -98347465 + AluSp SINE Alu 1 292 -21 1472 168 51 11 chr11 50436060 50436334 -98347138 + AluJb SINE Alu 14 298 -14 1308 177 139 70 chr11 50436377 50436750 -98346722 - LTR8A LTR ERV1 -1 726 328 653 152 174 8 chr11 50436752 50436884 -98346588 + BC200 scRNA scRNA 2 155 -45 819 180 6 47 chr11 50436895 50437067 -98346405 - LTR8A LTR ERV1 -347 380 216 658 144 0 0 chr11 50437072 50437169 -98346303 - AluJ/FLAM SINE Alu -214 98 2 248 348 8 8 chr11 50437188 50437306 -98346166 - MLT1L LTR MaLR -77 538 421 2185 108 13 3 chr11 50437371 50437677 -98345795 - AluSp SINE Alu 0 309 1 2065 133 3 7 chr11 50437747 50438049 -98345423 - AluSc SINE Alu -8 301 1 312 200 100 22 chr11 50438071 50438161 -98345311 - MLT1L LTR MaLR -338 277 181 280 204 19 0 chr11 50438168 50438222 -98345250 + MER20 DNA MER1_type 2 56 -163 599 173 45 18 chr11 50438222 50438332 -98345140 + LTR29 LTR ERV1 1 113 -509 1385 119 3 174 chr11 50438341 50438477 -98344995 + AluJo SINE Alu 1 44 -268 2329 92 0 3 chr11 50438477 50438782 -98344690 + AluY SINE Alu 1 304 -7 1385 119 3 174 chr11 50438782 50438990 -98344482 + AluJo SINE Alu 44 286 -26 252 172 0 35 chr11 50438990 50439040 -98344432 + LTR29 LTR ERV1 375 424 -198 * 736 170 58 29 chr11 50439035 50439206 -98344266 + LTR49 LTR ERV1 417 592 -3 2065 133 0 22 chr11 50439474 50439791 -98343681 + AluSx SINE Alu 2 311 -1 2312 92 23 0 chr11 50440169 50440472 -98343000 - AluSp SINE Alu -3 310 1 2127 112 0 27 chr11 50440692 50440987 -98342485 - AluSg SINE Alu -23 287 1 1243 179 40 81 chr11 50441011 50441117 -98342355 - MLT1D LTR MaLR -2 503 394 2257 101 7 0 chr11 50441117 50441415 -98342057 - AluSx SINE Alu -12 300 1 1243 179 40 81 chr11 50441415 50441426 -98342046 - MLT1D LTR MaLR -111 394 384 2151 117 3 0 chr11 50441426 50441726 -98341746 - AluSx SINE Alu -11 301 1 1243 179 40 81 chr11 50441726 50441904 -98341568 - MLT1D LTR MaLR -121 384 219 733 214 11 22 chr11 50441904 50442082 -98341390 + LTR28 LTR ERV1 1 176 -844 1585 172 55 7 chr11 50442153 50442426 -98341046 + MER61D LTR ERV1 216 501 0 340 138 0 17 chr11 50442427 50442485 -98340987 - MLT1D LTR MaLR -284 221 165 * 347 215 15 0 chr11 50442480 50442545 -98340927 - MER21B LTR ERV1 -271 592 527 1808 173 86 9 chr11 50442567 50442903 -98340569 + MSTA LTR MaLR 1 362 -66 852 102 0 0 chr11 50442903 50443021 -98340451 - AluSg/q SINE Alu -10 303 186 981 83 0 0 chr11 50443021 50443141 -98340331 - AluSg SINE Alu -190 120 1 1879 135 88 94 chr11 50443143 50443407 -98340065 + MER4D LTR ERV1 441 703 -200 1716 167 7 4 chr11 50443407 50443703 -98339769 - AluSx SINE Alu 0 302 6 1879 135 88 94 chr11 50443703 50443903 -98339569 + MER4D LTR ERV1 703 903 0 2199 119 0 0 chr11 50443934 50444227 -98339245 - AluSx SINE Alu -19 293 1 268 57 0 0 chr11 50444228 50444263 -98339209 + MSTA LTR MaLR 388 422 -35 551 107 0 0 chr11 50444263 50444364 -98339108 - AluSg SINE Alu 0 309 209 1189 74 7 7 chr11 50444365 50444514 -98338958 - AluSg SINE Alu -161 149 1 279 132 0 19 chr11 50444572 50444625 -98338847 - Alu SINE Alu 0 302 251 582 133 0 0 chr11 50444726 50444809 -98338663 - AluSg1 SINE Alu -225 84 2 2419 100 3 0 chr11 50444859 50445170 -98338302 - AluSq SINE Alu -1 312 1 2011 139 10 0 chr11 50445375 50445670 -98337802 + AluSx SINE Alu 1 298 -14 601 313 57 0 chr11 50445722 50445933 -98337539 - MIR SINE MIR -20 242 20 2636 244 98 29 chr11 50445933 50446818 -98336654 - L1MC4 LINE L1 -348 7540 6482 2294 100 3 35 chr11 50446818 50447137 -98336335 + AluSq SINE Alu 1 309 -4 2636 244 98 29 chr11 50447137 50447286 -98336186 - L1MC4 LINE L1 -1406 6482 6345 252 0 0 0 chr11 50447824 50447852 -98335620 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 2289 68 18 4 chr11 50447854 50448135 -98335337 - AluSp SINE Alu -28 285 1 194 295 90 0 chr11 50448321 50448399 -98335073 - MIR3 SINE MIR -30 178 94 2290 86 10 0 chr11 50448605 50448896 -98334576 - AluSg1 SINE Alu -3 306 13 1840 153 10 7 chr11 50448899 50449194 -98334278 - AluJb SINE Alu -16 296 1 1521 96 5 0 chr11 50449328 50449527 -98333945 - AluSx SINE Alu -81 231 32 2375 85 3 0 chr11 50449723 50450017 -98333455 + AluSg SINE Alu 1 295 -15 407 117 0 0 chr11 50450070 50450130 -98333342 + L1MC2 LINE L1 6262 6321 -23 2229 104 3 3 chr11 50451440 50451737 -98331735 - AluSx SINE Alu -15 297 1 828 117 0 0 chr11 50451945 50452056 -98331416 + AluSg/x SINE Alu 181 291 -19 2268 83 21 0 chr11 50452642 50452931 -98330541 - AluSx SINE Alu -17 295 1 2097 142 0 19 chr11 50453045 50453362 -98330110 - AluSx SINE Alu -1 311 1 2378 94 0 3 chr11 50453378 50453676 -98329796 - AluSx SINE Alu -15 297 1 331 256 191 42 chr11 50454177 50454392 -98329080 - MIR SINE MIR -13 249 3 2547 66 3 0 chr11 50454437 50454738 -98328734 - AluSp SINE Alu -11 302 1 2137 112 11 0 chr11 50454748 50455035 -98328437 - AluSq SINE Alu -21 292 3 1737 166 0 51 chr11 50455132 50455297 -98328175 - AluJo SINE Alu -15 297 154 2264 108 0 0 chr11 50455297 50455593 -98327879 - AluY SINE Alu -15 296 1 1737 166 0 51 chr11 50455593 50455740 -98327732 - AluJo SINE Alu -158 154 1 1850 149 3 59 chr11 50455759 50455931 -98327541 - AluJo SINE Alu -8 304 157 1884 161 34 0 chr11 50455931 50456229 -98327243 - AluSx SINE Alu -4 308 1 1850 149 3 59 chr11 50456229 50456378 -98327094 - AluJo SINE Alu -155 157 1 1221 189 22 9 chr11 50456379 50456607 -98326865 - AluJo SINE Alu -52 260 30 186 43 0 0 chr11 50456732 50456755 -98326717 + (A)n Simple_repeat Simple_repeat 1 23 0 377 335 92 0 chr11 50456797 50456982 -98326490 + L2 LINE L2 3061 3262 -10 2284 117 0 0 chr11 50458267 50458567 -98324905 + AluSx SINE Alu 1 300 -12 1904 114 89 0 chr11 50458567 50458848 -98324624 + AluSg SINE Alu 1 306 -4 1680 209 0 0 chr11 50459403 50459704 -98323768 - AluJo SINE Alu -7 305 5 2043 109 16 39 chr11 50459728 50460039 -98323433 + AluSq SINE Alu 1 304 -9 1500 88 0 0 chr11 50460067 50460249 -98323223 - AluY SINE Alu -127 184 3 1966 88 35 0 chr11 50460366 50460626 -98322846 + AluSg SINE Alu 21 289 -21 5122 66 3 5 chr11 50460647 50461299 -98322173 + L1PA6 LINE L1 5492 6142 -12 314 203 0 38 chr11 50461589 50461668 -98321804 - L1MC4 LINE L1 -455 7587 7512 199 174 22 22 chr11 50462056 50462102 -98321370 + L2 LINE L2 3263 3308 -5 1390 146 17 29 chr11 50462240 50462403 -98321069 - AluSx SINE Alu -17 295 131 184 30 61 0 chr11 50462403 50462436 -98321036 + (TG)n Simple_repeat Simple_repeat 2 36 0 1690 153 3 24 chr11 50462436 50462726 -98320746 - AluSx SINE Alu -28 284 1 1390 146 17 29 chr11 50462726 50462806 -98320666 - AluSx SINE Alu -179 133 59 2119 106 7 0 chr11 50462925 50463209 -98320263 - AluSp SINE Alu -24 289 4 372 248 121 7 chr11 50463229 50463378 -98320094 + L2 LINE L2 2032 2197 -1117 954 200 6 0 chr11 50463378 50463553 -98319919 - AluJo SINE Alu -3 309 134 1483 217 0 16 chr11 50463554 50463867 -98319605 - AluSx SINE Alu -4 308 1 407 215 0 0 chr11 50463902 50463981 -98319491 + AluJ/FLAM SINE Alu 1 79 -223 299 116 0 0 chr11 50464098 50464141 -98319331 - AluJo SINE Alu -175 127 85 768 106 26 8 chr11 50464147 50464279 -98319193 - LTR54 LTR ERV1 -193 317 124 902 118 0 16 chr11 50464281 50464408 -98319064 - FLAM_C SINE Alu -13 130 6 604 162 108 0 chr11 50464413 50464524 -98318948 - LTR54 LTR ERV1 -373 137 15 2090 144 0 0 chr11 50464525 50464824 -98318648 - AluSq SINE Alu -14 299 1 2438 78 0 10 chr11 50464838 50465145 -98318327 - AluSc SINE Alu -1 308 5 640 102 37 19 chr11 50465176 50465284 -98318188 + L1MA9 LINE L1 6203 6312 0 182 229 104 0 chr11 50465287 50465335 -98318137 + MER5B DNA MER1_type 1 53 -125 585 170 64 78 chr11 50465907 50466125 -98317347 - MER20 DNA MER1_type -4 215 1 1168 214 19 4 chr11 50466217 50466483 -98316989 + AluSp SINE Alu 14 283 -30 978 135 0 53 chr11 50466598 50466768 -98316704 + AluY SINE Alu 132 292 -19 2085 132 0 10 chr11 50466816 50467126 -98316346 + AluSq SINE Alu 1 307 -6 676 193 62 7 chr11 50467126 50467271 -98316201 + Charlie1 DNA MER1_type 1874 2026 -735 328 155 17 0 chr11 50467302 50467360 -98316112 + MER68 LTR ERV1 1 59 -503 405 227 0 11 chr11 50467360 50467448 -98316024 + AluSg SINE Alu 34 120 -190 1405 208 14 32 chr11 50467448 50467727 -98315745 + MER68 LTR ERV1 289 562 0 556 138 147 0 chr11 50467774 50467883 -98315589 + Charlie1 DNA MER1_type 2636 2760 -1 1124 202 0 0 chr11 50468612 50468805 -98314667 + MER46A DNA MER2_type 44 236 0 2251 116 0 10 chr11 50468984 50469295 -98314177 + AluSx SINE Alu 1 308 -4 2293 134 0 0 chr11 50469295 50469600 -98313872 + AluY SINE Alu 1 305 -6 2019 145 3 0 chr11 50469746 50470049 -98313423 - AluSg SINE Alu -6 304 1 1678 147 53 3 chr11 50470506 50470628 -98312844 + AluSx SINE Alu 4 119 -193 2040 141 6 6 chr11 50470628 50470940 -98312532 + AluSx SINE Alu 1 312 0 1678 147 53 3 chr11 50470940 50471102 -98312370 + AluSx SINE Alu 119 302 -10 2432 57 0 0 chr11 50471508 50471815 -98311657 - AluY SINE Alu 0 307 1 509 192 10 10 chr11 50471966 50472070 -98311402 + MSTD LTR MaLR 4 107 -289 1459 152 123 7 chr11 50472128 50472397 -98311075 - AluSg1 SINE Alu -9 300 1 420 20 0 0 chr11 50473387 50473436 -98310036 + (GAAAA)n Simple_repeat Simple_repeat 2 50 0 594 123 0 75 chr11 50473545 50473651 -98309821 + AluSq/x SINE Alu 14 111 -201 910 155 84 66 chr11 50473769 50473982 -98309490 + AluSc SINE Alu 85 301 -8 317 173 0 0 chr11 50473991 50474043 -98309429 + L1M4 LINE L1 4097 4148 -1998 4304 192 52 52 chr11 50474085 50474144 -98309328 + L1M4 LINE L1 4143 4201 -1945 1655 173 11 7 chr11 50474144 50474421 -98309051 - AluJb SINE Alu -22 290 13 4304 192 52 52 chr11 50474421 50475487 -98307985 + L1M4 LINE L1 4200 5268 -878 296 235 37 74 chr11 50475490 50475571 -98307901 + Tigger3(Golem) DNA MER2_type 1 78 -2951 2044 128 24 3 chr11 50475572 50475870 -98307602 - AluSx SINE Alu -8 304 1 672 185 32 53 chr11 50475874 50475927 -98307545 + L1M4 LINE L1 5271 5324 -850 6333 93 17 1 chr11 50475927 50477140 -98306332 + L1PA14 LINE L1 4935 6161 0 2210 91 3 3 chr11 50477146 50477458 -98306014 + AluSx SINE Alu 1 312 0 672 185 32 53 chr11 50477458 50477586 -98305886 + L1M4 LINE L1 5329 5455 -719 1358 92 6 0 chr11 50477689 50477931 -98305541 + AluSg/x SINE Alu 106 348 0 2405 90 0 0 chr11 50477953 50478254 -98305218 + AluSc SINE Alu 1 301 -8 2271 120 3 0 chr11 50478462 50478771 -98304701 + AluSp SINE Alu 1 310 -3 1113 189 58 0 chr11 50478993 50479199 -98304273 + AluJo SINE Alu 87 304 -8 1665 206 55 120 chr11 50479261 50479376 -98304096 - L2 LINE L2 -498 2816 2695 2430 63 17 0 chr11 50479376 50479677 -98303795 - AluY SINE Alu -5 306 1 1665 206 55 120 chr11 50479677 50480199 -98303273 - L2 LINE L2 -619 2695 2223 1939 151 3 0 chr11 50480199 50480491 -98302981 - AluJb SINE Alu -19 293 1 1665 206 55 120 chr11 50480491 50480526 -98302946 - L2 LINE L2 -1091 2223 2187 2159 134 0 16 chr11 50480526 50480839 -98302633 + AluSx SINE Alu 1 308 -4 684 250 7 0 chr11 50480846 50480994 -98302478 + FRAM SINE Alu 4 152 -24 2206 115 7 0 chr11 50481122 50481426 -98302046 + AluSp SINE Alu 2 307 -6 27 0 0 0 chr11 50481736 50481763 -98301709 + AT_rich Low_complexity Low_complexity 1 27 0 2067 243 43 61 chr11 50482429 50482906 -98300566 + L1M4 LINE L1 2679 3163 -2983 2369 96 7 0 chr11 50482906 50483209 -98300263 + AluSp SINE Alu 1 305 -8 2111 120 3 13 chr11 50483216 50483532 -98299940 + AluSq SINE Alu 1 313 0 2447 72 0 3 chr11 50483532 50483837 -98299635 + AluY SINE Alu 1 304 -7 2182 104 0 3 chr11 50483840 50484128 -98299344 + AluY SINE Alu 1 287 -24 2067 243 43 61 chr11 50484128 50484149 -98299323 + L1M4 LINE L1 3170 3190 -2956 2137 141 3 6 chr11 50484149 50484461 -98299011 + AluSx SINE Alu 1 311 -1 2067 243 43 61 chr11 50484461 50484814 -98298658 + L1M4 LINE L1 3190 3528 -2618 260 167 0 0 chr11 50484818 50484860 -98298612 + Alu SINE Alu 5 46 -255 534 225 0 0 chr11 50484960 50485071 -98298401 + AluJb SINE Alu 186 296 -16 833 127 105 50 chr11 50485074 50485217 -98298255 + LTR54 LTR ERV1 320 476 -34 2137 137 0 0 chr11 50485217 50485516 -98297956 + AluSg SINE Alu 1 299 -11 833 127 105 50 chr11 50485516 50485553 -98297919 + LTR54 LTR ERV1 476 510 0 747 139 8 8 chr11 50485553 50485682 -98297790 - L1MA9 LINE L1 -109 6203 6075 2450 135 77 89 chr11 50485684 50486291 -98297181 - LTR38B LTR ERV1 0 610 11 2662 168 78 32 chr11 50486295 50486921 -98296551 + LTR8A LTR ERV1 1 655 -72 1566 183 38 0 chr11 50486922 50487212 -98296260 - AluSp SINE Alu -12 301 1 313 184 214 10 chr11 50487256 50487354 -98296118 - MER112 DNA MER1_type -110 150 33 231 36 0 0 chr11 50487452 50487480 -98295992 + (A)n Simple_repeat Simple_repeat 1 28 0 2046 121 0 7 chr11 50489158 50489439 -98294033 - AluSx SINE Alu -33 279 1 1567 119 0 0 chr11 50489889 50490090 -98293382 - AluSx SINE Alu -111 201 1 536 221 0 0 chr11 50490098 50490193 -98293279 - Tigger5 DNA MER2_type -2228 95 1 192 283 33 0 chr11 50490591 50490651 -98292821 + MIR SINE MIR 80 141 -121 1773 124 120 0 chr11 50490859 50491125 -98292347 - AluSx SINE Alu -14 298 1 308 46 31 31 chr11 50491139 50491204 -98292268 + (CAAAA)n Simple_repeat Simple_repeat 2 66 0 521 282 35 29 chr11 50491264 50491434 -98292038 - MER5A DNA MER1_type 0 189 19 548 105 47 0 chr11 50491451 50491537 -98291935 - HY3 scRNA scRNA -11 90 1 677 146 0 62 chr11 50491821 50491965 -98291507 - FLAM_C SINE Alu 0 143 9 1488 200 39 4 chr11 50492282 50492562 -98290910 - AluJo SINE Alu -22 290 1 2269 115 0 0 chr11 50493883 50494188 -98289284 - AluY SINE Alu -6 305 1 2134 124 0 10 chr11 50494190 50494488 -98288984 - AluSx SINE Alu -17 295 1 1717 148 63 11 chr11 50494529 50494813 -98288659 - AluSg SINE Alu -11 299 1 2526 46 0 16 chr11 50494819 50495122 -98288350 - AluY SINE Alu -13 298 1 2210 107 3 10 chr11 50495977 50496275 -98287197 - AluSx SINE Alu -14 298 3 395 210 49 0 chr11 50496284 50496365 -98287107 - FLAM SINE Alu -6 127 43 273 136 0 23 chr11 50496465 50496509 -98286963 - Alu SINE Alu -256 43 1 23 33 0 0 chr11 50496866 50496896 -98286576 + AT_rich Low_complexity Low_complexity 1 30 0 1187 164 16 56 chr11 50496971 50497146 -98286326 - Tigger2 DNA MER2_type -1 2717 2537 2295 103 3 3 chr11 50497146 50497447 -98286025 - AluSp SINE Alu -12 301 1 1187 164 16 56 chr11 50497447 50497474 -98285998 - Tigger2 DNA MER2_type -181 2537 2510 2249 90 0 3 chr11 50497474 50497762 -98285710 - AluSq SINE Alu -26 287 1 1187 164 16 56 chr11 50497762 50497808 -98285664 - Tigger2 DNA MER2_type -208 2510 2478 953 173 6 6 chr11 50497808 50497970 -98285502 + FRAM SINE Alu 1 161 -15 3781 128 5 7 chr11 50497973 50498541 -98284931 - Tigger2 DNA MER2_type -1548 1170 604 2144 117 0 3 chr11 50498551 50498842 -98284630 - AluSx SINE Alu -22 290 1 747 170 19 25 chr11 50498842 50499001 -98284471 - Tigger2 DNA MER2_type -2560 158 1 380 189 124 59 chr11 50499583 50499736 -98283736 - MIR SINE MIR -6 256 94 2137 90 30 30 chr11 50500187 50500486 -98282986 - AluSg SINE Alu -11 299 1 1955 141 35 0 chr11 50500593 50500905 -98282567 + L1M3 LINE L1 5486 5808 -375 575 297 0 0 chr11 50500929 50501114 -98282358 - AluSq SINE Alu 0 313 129 380 333 93 8 chr11 50501124 50501414 -98282058 + L1MB2 LINE L1 5812 6128 -43 542 103 0 0 chr11 50501562 50501640 -98281832 - AluY SINE Alu -238 80 3 301 280 140 0 chr11 50501668 50501775 -98281697 - L2 LINE L2 0 3272 3151 943 225 4 26 chr11 50502016 50502243 -98281229 + AluJb SINE Alu 87 308 -4 785 149 0 22 chr11 50502306 50502440 -98281032 + FLAM_C SINE Alu 1 131 -2 2072 136 3 3 chr11 50502444 50502738 -98280734 + AluJb SINE Alu 1 294 -18 2183 91 0 44 chr11 50502965 50503294 -98280178 + AluSx SINE Alu 1 316 0 757 169 0 44 chr11 50503845 50503981 -98279491 - FLAM_C SINE Alu -10 133 4 1967 164 0 0 chr11 50504055 50504348 -98279124 - AluJb SINE Alu -19 293 1 391 251 25 136 chr11 50504784 50504938 -98278534 - L2 LINE L2 -4 3309 3139 2306 93 0 29 chr11 50504938 50505077 -98278395 + AluSx SINE Alu 1 142 -170 2395 90 3 0 chr11 50505077 50505376 -98278096 + AluSp SINE Alu 1 300 -13 2306 93 0 29 chr11 50505376 50505549 -98277923 + AluSx SINE Alu 142 304 -8 2106 118 27 0 chr11 50505551 50505848 -98277624 + AluSq SINE Alu 1 305 -8 391 251 25 136 chr11 50505848 50506013 -98277459 - L2 LINE L2 -175 3138 3023 2395 75 3 20 chr11 50506013 50506319 -98277153 + AluSx SINE Alu 1 301 -11 246 178 0 0 chr11 50506445 50506490 -98276982 + Alu SINE Alu 256 300 -2 2133 109 24 3 chr11 50506729 50507023 -98276449 - AluSx SINE Alu -12 300 1 2258 88 6 31 chr11 50507251 50507568 -98275904 + AluY SINE Alu 1 309 -2 1830 131 3 45 chr11 50507578 50507868 -98275604 + AluJb SINE Alu 1 278 -34 360 0 0 0 chr11 50507868 50507908 -98275564 + (CAAAA)n Simple_repeat Simple_repeat 3 42 0 297 307 45 82 chr11 50508027 50508129 -98275343 - MIR SINE MIR -26 236 132 1788 174 13 13 chr11 50508129 50508440 -98275032 + AluJo SINE Alu 1 311 -1 297 307 45 82 chr11 50508440 50508543 -98274929 - MIR SINE MIR -130 132 38 2149 88 29 0 chr11 50508543 50508839 -98274633 - AluSg SINE Alu 0 304 1 297 307 45 82 chr11 50508839 50508875 -98274597 - MIR SINE MIR -224 38 2 437 220 75 31 chr11 50509350 50509509 -98273963 + MER103 DNA DNA 1 166 0 496 154 23 23 chr11 50510038 50510168 -98273304 + A-rich Low_complexity Low_complexity 3 132 0 2080 104 24 7 chr11 50510170 50510458 -98273014 + AluSx SINE Alu 1 293 -19 2095 125 3 10 chr11 50510570 50510866 -98272606 + AluSg SINE Alu 1 294 -16 946 80 0 87 chr11 50510888 50511038 -98272434 + FLAM_C SINE Alu 7 143 0 1824 119 13 74 chr11 50511057 50511367 -98272105 + AluSg SINE Alu 6 296 -14 2174 96 32 0 chr11 50511367 50511649 -98271823 + AluSg1 SINE Alu 1 291 -18 221 56 0 28 chr11 50511661 50511697 -98271775 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1488 142 0 14 chr11 50512010 50512228 -98271244 + AluSx SINE Alu 5 219 -93 1883 119 22 7 chr11 50512432 50512710 -98270762 + AluSg SINE Alu 18 299 -11 2381 63 7 23 chr11 50512820 50513123 -98270349 + AluSg SINE Alu 1 298 -12 1815 125 16 56 chr11 50513183 50513326 -98270146 + AluJo SINE Alu 2 128 -184 2371 90 3 6 chr11 50513326 50513637 -98269835 + AluSx SINE Alu 1 310 -2 1815 125 16 56 chr11 50513637 50513796 -98269676 + AluJo SINE Alu 128 292 -20 523 360 92 7 chr11 50513905 50514177 -98269295 + L2 LINE L2 2945 3239 -33 2335 86 0 0 chr11 50514229 50514521 -98268951 + AluSg SINE Alu 1 292 -18 39 0 0 0 chr11 50514751 50514790 -98268682 + AT_rich Low_complexity Low_complexity 1 39 0 1855 150 0 11 chr11 50515144 50515278 -98268194 + AluSx SINE Alu 1 135 -170 2447 81 3 3 chr11 50515278 50515587 -98267885 + AluSp SINE Alu 1 309 -4 1855 150 0 11 chr11 50515587 50515760 -98267712 + AluSx SINE Alu 135 305 0 2258 96 3 13 chr11 50515835 50516136 -98267336 + AluSg SINE Alu 1 298 -12 302 319 11 43 chr11 50516846 50516999 -98266473 + GA-rich Low_complexity Low_complexity 2 150 -30 2204 114 13 0 chr11 50516999 50517305 -98266167 + AluSx SINE Alu 1 310 -2 302 319 11 43 chr11 50517305 50517336 -98266136 + GA-rich Low_complexity Low_complexity 150 180 0 725 218 26 92 chr11 50517779 50517870 -98265602 + AluJo SINE Alu 5 100 -212 2515 77 0 0 chr11 50517870 50518181 -98265291 + AluY SINE Alu 1 311 0 725 218 26 92 chr11 50518181 50518318 -98265154 + AluJo SINE Alu 100 218 -94 1003 83 0 0 chr11 50518403 50518523 -98264949 + AluSq/x SINE Alu 2 121 -192 204 40 0 0 chr11 50518527 50518552 -98264920 + (A)n Simple_repeat Simple_repeat 1 25 0 1705 98 0 49 chr11 50518560 50518804 -98264668 + AluSx SINE Alu 21 252 -60 2100 123 57 21 chr11 50518929 50519263 -98264209 - THE1B LTR MaLR 0 364 19 842 135 0 8 chr11 50519363 50519496 -98263976 + AluSg/x SINE Alu 163 294 -16 231 303 47 104 chr11 50519528 50519739 -98263733 - L2 LINE L2 -563 2751 2553 1995 145 0 3 chr11 50519949 50520246 -98263226 - AluJb SINE Alu -14 298 3 1942 155 7 0 chr11 50520256 50520547 -98262925 - AluSx SINE Alu -19 293 1 181 261 0 0 chr11 50521043 50521089 -98262383 - MIR SINE MIR -109 153 108 575 96 250 0 chr11 50521191 50521295 -98262177 + AluJb SINE Alu 179 308 -4 2171 139 148 56 chr11 50521301 50521358 -98262114 + LTR48 LTR ERV1 21 71 -716 487 119 12 0 chr11 50521358 50521442 -98262030 + L1PA16 LINE L1 6080 6164 -2 2171 139 148 56 chr11 50521442 50521939 -98261533 + LTR48 LTR ERV1 71 626 -161 2046 86 0 4 chr11 50521939 50522194 -98261278 - AluSx SINE Alu -58 254 1 908 191 62 24 chr11 50522236 50522445 -98261027 + AluJb SINE Alu 83 299 -13 1077 183 58 10 chr11 50522447 50522655 -98260817 + MER44D DNA MER2_type 516 605 0 361 231 161 63 chr11 50522659 50522958 -98260514 + L1M4 LINE L1 4271 4598 -1548 2103 125 3 0 chr11 50522981 50523284 -98260188 + AluSg SINE Alu 1 304 -6 2077 123 3 0 chr11 50523659 50523951 -98259521 + AluSx SINE Alu 18 310 -2 2277 111 0 6 chr11 50524051 50524366 -98259106 + AluSq SINE Alu 1 313 0 475 211 9 9 chr11 50524428 50524537 -98258935 - FLAM_A SINE Alu -1 141 33 2201 97 21 3 chr11 50524660 50524950 -98258522 + AluSx SINE Alu 9 303 -9 1504 173 50 7 chr11 50525724 50526007 -98257465 - AluJo SINE Alu -17 295 1 1847 66 27 12 chr11 50526043 50526300 -98257172 - L1MA1 LINE L1 -6 6296 6036 3818 104 55 37 chr11 50526348 50527306 -98256166 + MER11A LTR ERVK 1 1071 0 2264 89 10 3 chr11 50527965 50528256 -98255216 - AluSg SINE Alu -17 293 1 1866 118 20 62 chr11 50528490 50528651 -98254821 - AluSx SINE Alu -19 293 150 1732 121 4 12 chr11 50528651 50528908 -98254564 - AluSq SINE Alu -13 300 46 1866 118 20 62 chr11 50528908 50529052 -98254420 - AluSx SINE Alu -162 150 1 493 309 6 0 chr11 50529201 50529382 -98254090 + L1MB2 LINE L1 5569 5750 -433 1291 135 0 0 chr11 50529456 50529641 -98253831 - AluSq SINE Alu 0 313 129 1596 155 90 3 chr11 50529653 50529943 -98253529 + L1MB2 LINE L1 5817 6131 -40 2135 63 66 0 chr11 50529943 50530214 -98253258 + AluY SINE Alu 4 292 -19 1941 125 10 30 chr11 50530219 50530353 -98253119 + AluSx SINE Alu 5 140 -172 1985 115 3 24 chr11 50530353 50530679 -98252793 + AluSx SINE Alu 1 320 0 1941 125 10 30 chr11 50530679 50530839 -98252633 + AluSx SINE Alu 140 295 -17 185 196 22 22 chr11 50530977 50531023 -98252449 - L2 LINE L2 -5 3308 3263 594 200 86 7 chr11 50531411 50531551 -98251921 + L1MC4 LINE L1 7512 7662 -380 2184 122 0 7 chr11 50531598 50531902 -98251570 + AluSx SINE Alu 1 302 -10 192 152 0 0 chr11 50532197 50532230 -98251242 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 208 219 24 0 chr11 50532232 50532273 -98251199 + polypurine Low_complexity Low_complexity 3 44 0 328 230 32 40 chr11 50532273 50532399 -98251073 + L1MC4 LINE L1 7918 8042 0 1790 135 90 0 chr11 50532455 50532721 -98250751 - AluSx SINE Alu -22 290 1 2147 108 7 26 chr11 50532960 50533265 -98250207 - AluSq SINE Alu -12 301 3 1410 191 55 22 chr11 50534285 50534558 -98248914 + AluJo SINE Alu 1 282 -30 212 214 0 0 chr11 50534564 50534606 -98248866 + L2 LINE L2 3262 3303 -10 233 78 0 98 chr11 50534636 50534687 -98248785 + AluJo SINE Alu 272 317 -3 1980 149 14 0 chr11 50534825 50535114 -98248358 - AluSx SINE Alu -19 293 1 1794 178 0 7 chr11 50535276 50535569 -98247903 - AluJo SINE Alu -16 296 6 233 82 265 0 chr11 50535670 50535719 -98247753 + Alu SINE Alu 240 301 0 313 135 0 0 chr11 50535757 50535813 -98247659 - Alu SINE Alu -6 296 252 2359 89 3 10 chr11 50535845 50536147 -98247325 - AluSg SINE Alu -10 300 1 470 261 102 33 chr11 50536357 50536572 -98246900 - L2 LINE L2 -257 3056 2827 2306 103 3 7 chr11 50536797 50537107 -98246365 - AluSx SINE Alu -3 309 1 1962 126 7 27 chr11 50537608 50537909 -98245563 + AluSg SINE Alu 1 295 -15 2539 57 0 13 chr11 50538086 50538400 -98245072 - AluY SINE Alu -1 310 1 668 232 89 44 chr11 50538404 50538697 -98244775 + L1M4 LINE L1 4639 4944 -1202 2148 75 89 0 chr11 50540311 50540591 -98242881 + AluSp SINE Alu 1 305 -8 2265 76 0 21 chr11 50542275 50542566 -98240906 - AluSp SINE Alu -28 285 1 22 0 0 0 chr11 50542566 50542588 -98240884 + AT_rich Low_complexity Low_complexity 1 22 0 371 161 43 75 chr11 50542691 50542726 -98240746 + Looper DNA T2_type 2 37 -1521 2269 114 0 0 chr11 50542726 50543023 -98240449 - AluSg SINE Alu -13 297 1 371 161 43 75 chr11 50543023 50543080 -98240392 + Looper DNA T2_type 37 91 -1467 1093 141 40 5 chr11 50543134 50543333 -98240139 + Looper DNA T2_type 1214 1419 -139 376 244 26 0 chr11 50543329 50543407 -98240065 - FLAM_A SINE Alu -50 83 4 * 2202 82 57 0 chr11 50543417 50543699 -98239773 - AluSg SINE Alu -12 298 1 355 200 21 57 chr11 50543716 50543803 -98239669 + AluJ/FLAM SINE Alu 3 74 -228 330 26 0 0 chr11 50544081 50544120 -98239352 + (TG)n Simple_repeat Simple_repeat 2 40 0 2335 68 7 0 chr11 50544863 50545177 -98238295 + AluY SINE Alu 1 316 0 21 0 0 0 chr11 50545339 50545360 -98238112 + AT_rich Low_complexity Low_complexity 1 21 0 1001 129 0 53 chr11 50545403 50545573 -98237899 + AluY SINE Alu 132 292 -19 328 68 20 3 chr11 50545621 50545871 -98237601 + AluY SINE Alu 1 323 0 1727 139 17 38 chr11 50545886 50546174 -98237298 + AluSx SINE Alu 1 282 -30 450 53 0 0 chr11 50546584 50546641 -98236831 + (A)n Simple_repeat Simple_repeat 1 57 0 34 24 0 0 chr11 50546824 50546865 -98236607 + AT_rich Low_complexity Low_complexity 1 41 0 24 32 0 0 chr11 50546969 50547000 -98236472 + AT_rich Low_complexity Low_complexity 1 31 0 375 60 0 0 chr11 50547236 50547286 -98236186 + (A)n Simple_repeat Simple_repeat 1 50 0 207 259 0 17 chr11 50547377 50547435 -98236037 + L2 LINE L2 3221 3277 -36 939 142 0 0 chr11 50547469 50547603 -98235869 - AluSp/q SINE Alu -12 301 168 2421 87 0 0 chr11 50547812 50548112 -98235360 - AluSx SINE Alu -12 300 1 238 103 0 0 chr11 50548114 50548153 -98235319 + L1MB5 LINE L1 6128 6166 -8 28 0 0 0 chr11 50548153 50548181 -98235291 + AT_rich Low_complexity Low_complexity 1 28 0 189 139 0 0 chr11 50548248 50548291 -98235181 + (TGG)n Simple_repeat Simple_repeat 1 43 0 1791 171 7 13 chr11 50548786 50549084 -98234388 - AluJb SINE Alu -16 296 1 22 35 0 0 chr11 50549101 50549130 -98234342 + AT_rich Low_complexity Low_complexity 1 29 0 718 191 85 0 chr11 50549460 50549601 -98233871 - FRAM SINE Alu -23 153 1 243 226 0 0 chr11 50549816 50549869 -98233603 + G-rich Low_complexity Low_complexity 2 54 0 515 263 94 6 chr11 50551060 50551220 -98232252 - MIR3 SINE MIR -6 202 29 1075 142 19 80 chr11 50551481 50551693 -98231779 - AluJo SINE Alu -36 276 78 782 51 31 0 chr11 50552118 50552216 -98231256 - HY3 scRNA scRNA 0 101 1 2108 119 0 3 chr11 50552467 50552760 -98230712 - AluSx SINE Alu -6 306 15 243 270 135 0 chr11 50552772 50552861 -98230611 + U13 snRNA snRNA 4 104 0 2030 123 14 0 chr11 50553114 50553399 -98230073 - AluSp SINE Alu -24 289 1 1990 109 18 4 chr11 50553480 50553754 -98229718 - AluSq SINE Alu -21 292 15 1616 208 28 3 chr11 50553759 50554047 -98229425 - AluJb SINE Alu -12 300 6 2283 112 3 0 chr11 50554072 50554375 -98229097 - AluSx SINE Alu -8 304 1 1041 169 5 58 chr11 50554740 50554947 -98228525 - AluJo SINE Alu -21 291 96 2378 80 0 0 chr11 50558059 50558348 -98225124 + AluSq SINE Alu 1 289 -24 2160 94 17 20 chr11 50558558 50558857 -98224615 - AluSx SINE Alu -14 298 1 1114 189 72 106 chr11 50559668 50559759 -98223713 + L1MA9 LINE L1 5965 6058 -254 2106 119 0 0 chr11 50559759 50560036 -98223436 + AluSc SINE Alu 1 277 -32 1114 189 72 106 chr11 50560036 50560304 -98223168 + L1MA9 LINE L1 6058 6312 0 2453 62 3 0 chr11 50560864 50561156 -98222316 + AluY SINE Alu 1 293 -18 1104 156 0 0 chr11 50561161 50561334 -98222138 + AluSg/x SINE Alu 135 307 -3 2162 90 0 17 chr11 50561341 50561630 -98221842 + AluSg SINE Alu 1 284 -26 1876 127 51 3 chr11 50561990 50562282 -98221190 + AluY SINE Alu 1 306 -5 801 127 0 0 chr11 50562594 50562704 -98220768 - FLAM_C SINE Alu -32 111 2 2215 121 0 3 chr11 50562716 50563014 -98220458 - AluSp SINE Alu -16 297 1 1106 168 6 0 chr11 50563561 50563734 -98219738 - AluJb SINE Alu -12 300 127 198 0 0 0 chr11 50563740 50563762 -98219710 + (T)n Simple_repeat Simple_repeat 1 22 0 1069 189 20 5 chr11 50563774 50563970 -98219502 + MSTA LTR MaLR 1 199 -227 2172 126 7 0 chr11 50563971 50564272 -98219200 + AluSq SINE Alu 1 303 -10 1258 53 0 0 chr11 50564273 50564463 -98219009 + L1PA3 LINE L1 5995 6184 0 270 220 0 0 chr11 50564770 50564820 -98218652 + L2 LINE L2 3215 3264 -8 1462 117 5 31 chr11 50564852 50565075 -98218397 + MSTA LTR MaLR 185 401 -27 2418 109 0 0 chr11 50565088 50565400 -98218072 - AluSx SINE Alu 0 312 1 869 115 0 0 chr11 50565438 50565551 -98217921 - FLAM_C SINE Alu -30 113 1 613 324 54 4 chr11 50565838 50566079 -98217393 - MIR SINE MIR -1 261 9 1916 109 0 0 chr11 50566080 50566328 -98217144 - AluSq SINE Alu -65 248 1 600 276 11 75 chr11 50566470 50566595 -98216877 + MIR SINE MIR 2 101 -161 2248 119 0 0 chr11 50566595 50566897 -98216575 - AluSx SINE Alu -10 302 1 600 276 11 75 chr11 50566897 50567050 -98216422 + MIR SINE MIR 101 262 0 2044 114 0 34 chr11 50568286 50568584 -98214888 + AluSx SINE Alu 23 310 -2 26 0 0 0 chr11 50568692 50568718 -98214754 + AT_rich Low_complexity Low_complexity 1 26 0 2453 86 0 3 chr11 50568718 50569022 -98214450 + AluY SINE Alu 1 303 -8 243 0 0 0 chr11 50569022 50569049 -98214423 + (TA)n Simple_repeat Simple_repeat 2 28 0 2322 98 0 3 chr11 50569697 50570002 -98213470 - AluY SINE Alu -5 306 3 373 237 31 0 chr11 50570006 50570103 -98213369 - L1M4 LINE L1 -1002 5144 5045 1702 190 0 7 chr11 50570118 50570413 -98213059 - AluJo SINE Alu -18 294 2 231 188 0 0 chr11 50570423 50570471 -98213001 + CT-rich Low_complexity Low_complexity 1 48 0 963 148 26 0 chr11 50570471 50570626 -98212846 - FRAM SINE Alu -23 153 1 1844 230 28 0 chr11 50570627 50571058 -98212414 - L1M4 LINE L1 -1103 5043 4601 315 192 0 0 chr11 50571056 50571108 -98212364 - L1M4 LINE L1 -2068 4078 4027 * 776 298 52 45 chr11 50571104 50571202 -98212270 - L1M4 LINE L1 -5627 915 819 1721 157 10 46 chr11 50571202 50571487 -98211985 + AluJb SINE Alu 1 276 -36 228 67 0 0 chr11 50571487 50571517 -98211955 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 1721 157 10 46 chr11 50571517 50571537 -98211935 + AluJb SINE Alu 276 295 -17 776 298 52 45 chr11 50571537 50571861 -98211611 - L1M4 LINE L1 -5723 819 490 2377 96 0 3 chr11 50572161 50572474 -98210998 + AluSx SINE Alu 1 312 0 2305 122 0 0 chr11 50572487 50572790 -98210682 + AluSq SINE Alu 1 303 -10 1550 174 7 14 chr11 50572808 50573083 -98210389 + AluJb SINE Alu 22 294 -18 408 188 47 0 chr11 50573084 50573169 -98210303 - L1M4 LINE L1 -2515 3631 3543 541 114 13 0 chr11 50573177 50573256 -98210216 + AluS SINE Alu 1 80 -233 1139 199 4 26 chr11 50573356 50573616 -98209856 + AluSx SINE Alu 52 307 -5 2392 103 0 0 chr11 50573616 50573926 -98209546 + AluY SINE Alu 1 310 -1 794 138 73 87 chr11 50574582 50574800 -98208672 - MER20 DNA MER1_type -4 215 1 2161 103 18 0 chr11 50574879 50575161 -98208311 + AluSp SINE Alu 1 287 -26 2292 104 0 9 chr11 50575350 50575666 -98207806 + AluSq SINE Alu 1 313 0 1853 132 3 21 chr11 50575735 50576050 -98207422 + AluSx SINE Alu 1 310 0 1761 162 10 39 chr11 50576401 50576537 -98206935 + AluSx SINE Alu 1 139 -173 2305 125 0 0 chr11 50576537 50576848 -98206624 + AluSx SINE Alu 1 311 -1 1761 162 10 39 chr11 50576848 50577019 -98206453 + AluSx SINE Alu 139 299 -13 1823 147 14 20 chr11 50577139 50577432 -98206040 + AluSx SINE Alu 9 299 -13 869 133 0 22 chr11 50577441 50577576 -98205896 + FLAM_C SINE Alu 2 133 0 211 296 0 12 chr11 50577576 50577648 -98205824 + GA-rich Low_complexity Low_complexity 8 80 0 1985 100 30 37 chr11 50578068 50578368 -98205104 + AluSg SINE Alu 1 298 -12 2260 99 3 0 chr11 50578376 50578694 -98204778 + AluSp SINE Alu 1 319 0 760 246 25 65 chr11 50578708 50579029 -98204443 + AluJb SINE Alu 1 308 -4 5411 56 1 3 chr11 50579753 50580417 -98203055 - L1PA6 LINE L1 0 6154 5492 2290 53 32 3 chr11 50580438 50580720 -98202752 - AluY SINE Alu -21 290 1 2106 124 0 0 chr11 50580720 50581002 -98202470 - AluSx SINE Alu -29 283 1 979 198 78 33 chr11 50581049 50581291 -98202181 - AluJo SINE Alu -30 282 30 1394 188 59 14 chr11 50581296 50581583 -98201889 - AluJb SINE Alu -11 301 2 603 196 9 0 chr11 50581602 50581709 -98201763 - FLAM_C SINE Alu -34 109 2 807 133 16 8 chr11 50581908 50582036 -98201436 - FLAM_C SINE Alu 0 133 5 1665 112 123 4 chr11 50582119 50582387 -98201085 + AluJb SINE Alu 1 300 -12 2015 109 10 10 chr11 50583807 50584101 -98199371 + AluSg SINE Alu 2 295 -15 203 216 135 14 chr11 50584658 50584732 -98198740 - MIR SINE MIR 0 262 180 505 194 11 0 chr11 50584751 50584844 -98198628 - AluJo/FRAM SINE Alu -21 291 198 2253 103 0 0 chr11 50584846 50585138 -98198334 - AluSx SINE Alu -20 292 1 27 0 0 0 chr11 50585138 50585165 -98198307 + AT_rich Low_complexity Low_complexity 1 27 0 1791 125 11 4 chr11 50585165 50585429 -98198043 - AluSc SINE Alu -21 288 23 254 158 175 18 chr11 50585430 50585487 -98197985 - AluSx SINE Alu -11 290 225 2060 171 68 34 chr11 50585504 50585948 -98197524 + LTR2B LTR ERV1 32 490 0 1641 119 18 0 chr11 50585948 50586175 -98197297 - AluSx SINE Alu -81 231 1 2237 98 7 3 chr11 50586178 50586475 -98196997 - AluSq SINE Alu -15 298 1 836 103 0 0 chr11 50586491 50586607 -98196865 - AluY SINE Alu -2 309 194 290 215 47 28 chr11 50586711 50586818 -98196654 + L1MC4 LINE L1 7923 8031 -11 1950 133 0 36 chr11 50586918 50587226 -98196246 + AluJb SINE Alu 1 297 -15 617 151 132 0 chr11 50587262 50587368 -98196104 + FLAM_C SINE Alu 2 121 -22 342 0 0 0 chr11 50587368 50587406 -98196066 + (TAA)n Simple_repeat Simple_repeat 2 39 0 2302 92 17 0 chr11 50588129 50588422 -98195050 + AluSx SINE Alu 1 298 -14 529 209 91 0 chr11 50588517 50588627 -98194845 - 5S rRNA rRNA 0 121 2 716 180 8 8 chr11 50589082 50589210 -98194262 + FLAM_C SINE Alu 3 130 -13 337 180 16 0 chr11 50589298 50589359 -98194113 + L2 LINE L2 3249 3310 -3 2104 121 0 13 chr11 50589361 50589659 -98193813 - AluSx SINE Alu -18 294 1 2431 67 3 10 chr11 50589673 50589971 -98193501 - AluY SINE Alu -15 296 1 2048 126 25 0 chr11 50590054 50590339 -98193133 - AluSx SINE Alu -20 292 1 567 0 0 0 chr11 50591016 50591079 -98192393 + (CA)n Simple_repeat Simple_repeat 2 64 0 2194 113 0 3 chr11 50591609 50591909 -98191563 + AluSq SINE Alu 1 299 -14 2210 109 7 3 chr11 50592231 50592535 -98190937 + AluSq SINE Alu 6 310 -3 2163 117 3 3 chr11 50593044 50593344 -98190128 + AluSx SINE Alu 1 300 -12 847 155 87 19 chr11 50593344 50593505 -98189967 + AluJb SINE Alu 134 305 -7 461 258 25 25 chr11 50593532 50593691 -98189781 + L1ME4a LINE L1 5522 5680 -441 2068 120 48 0 chr11 50593692 50593984 -98189488 + AluSx SINE Alu 1 306 -6 325 224 112 37 chr11 50594133 50594267 -98189205 + L1ME4a LINE L1 5975 6118 -3 1809 174 27 3 chr11 50594422 50594716 -98188756 - AluJb SINE Alu -11 301 1 1990 153 3 0 chr11 50594770 50595071 -98188401 - AluSx SINE Alu -10 302 1 1902 114 100 0 chr11 50595452 50595723 -98187749 + AluSx SINE Alu 1 298 -14 1142 109 23 6 chr11 50595895 50596069 -98187403 - L1PA11 LINE L1 -7 6167 5991 249 202 147 37 chr11 50596112 50596221 -98187251 - L2 LINE L2 0 3313 3193 1512 169 16 0 chr11 50597773 50598015 -98185457 + AluJb SINE Alu 1 246 -66 2558 72 0 0 chr11 50598015 50598320 -98185152 + AluY SINE Alu 1 305 -6 281 189 0 0 chr11 50598322 50598406 -98185066 + AluJb SINE Alu 238 302 0 1148 180 96 114 chr11 50598409 50598519 -98184953 + L1MC4 LINE L1 7552 7662 -380 1521 142 15 11 chr11 50598519 50598779 -98184693 + AluSx SINE Alu 36 296 -16 1148 180 96 114 chr11 50598779 50599168 -98184304 + L1MC4 LINE L1 7662 8042 0 2036 135 44 0 chr11 50599175 50599471 -98184001 + AluSx SINE Alu 1 309 -3 312 239 0 0 chr11 50599836 50599903 -98183569 + AluJ/monomer SINE Alu 235 301 0 281 277 116 0 chr11 50600809 50600921 -98182551 + L3 LINE CR1 1161 1285 -292 186 357 39 16 chr11 50600965 50601094 -98182378 + L3 LINE CR1 1425 1556 -21 744 147 0 0 chr11 50601158 50601267 -98182205 + AluSq/x SINE Alu 1 109 -204 849 132 7 22 chr11 50601375 50601511 -98181961 - FLAM_C SINE Alu -9 134 1 1677 172 0 27 chr11 50601544 50601840 -98181632 - AluJb SINE Alu -13 299 12 2486 66 0 13 chr11 50601910 50602212 -98181260 - AluSc SINE Alu -11 298 1 243 0 0 0 chr11 50603108 50603135 -98180337 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 2351 88 3 0 chr11 50603599 50603894 -98179578 + AluSx SINE Alu 1 296 -16 408 268 165 27 chr11 50604479 50604703 -98178769 - MIR SINE MIR 0 262 8 561 123 37 0 chr11 50604931 50605012 -98178460 - HY4 scRNA scRNA -9 84 1 1112 153 79 52 chr11 50605165 50605259 -98178213 - AluJo SINE Alu -77 235 145 2237 107 4 0 chr11 50605259 50605569 -98177903 - AluSg SINE Alu 0 311 1 1112 153 79 52 chr11 50605569 50605702 -98177770 - AluJo SINE Alu -167 145 1 2060 117 13 19 chr11 50606072 50606379 -98177093 - AluSx SINE Alu -7 305 1 2322 95 0 3 chr11 50606981 50607275 -98176197 - AluSg SINE Alu -17 293 1 4382 55 9 0 chr11 50607294 50607835 -98175637 - L1PA5 LINE L1 0 6154 5609 262 62 0 0 chr11 50607835 50607867 -98175605 - U3 snRNA snRNA -185 32 1 1695 136 64 36 chr11 50607915 50608245 -98175227 - L1MB2 LINE L1 -3 6168 5830 1741 96 0 8 chr11 50608247 50608487 -98174985 - AluY SINE Alu -5 306 69 2230 98 3 3 chr11 50608592 50608878 -98174594 - AluSx SINE Alu -14 298 13 1151 80 0 0 chr11 50608884 50609021 -98174451 - AluSq/x SINE Alu -175 137 1 331 275 0 0 chr11 50609197 50609277 -98174195 - MER112 DNA MER1_type 0 260 181 279 0 0 0 chr11 50609277 50609308 -98174164 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 439 261 22 0 chr11 50609317 50609409 -98174063 - FLAM_A SINE Alu -48 94 1 408 291 26 0 chr11 50609452 50609569 -98173903 + L3 LINE CR1 920 1039 -538 1076 169 13 84 chr11 50609622 50609708 -98173764 + Charlie1a DNA MER1_type 1 92 -2669 2148 120 0 0 chr11 50609708 50610000 -98173472 - AluSx SINE Alu -20 292 1 1076 169 13 84 chr11 50610000 50610138 -98173334 + Charlie1a DNA MER1_type 92 209 -1246 242 200 0 0 chr11 50610138 50610193 -98173279 + L1M4 LINE L1 3938 3992 -2154 787 197 100 52 chr11 50610298 50610567 -98172905 + LTR8A LTR ERV1 397 678 -49 1664 165 52 23 chr11 50610606 50610952 -98172520 + L1MB8 LINE L1 5821 6176 -2 2210 116 0 10 chr11 50610962 50611272 -98172200 + AluSq SINE Alu 1 307 -6 723 208 60 6 chr11 50611272 50611430 -98172042 + Charlie1a DNA MER1_type 564 733 -722 417 86 17 0 chr11 50611447 50611505 -98171967 + MER68 LTR ERV1 1 59 -503 521 101 0 0 chr11 50611505 50611574 -98171898 + AluSg SINE Alu 34 102 -208 1547 205 13 30 chr11 50611574 50611872 -98171600 + MER68 LTR ERV1 270 562 0 595 119 147 0 chr11 50611919 50612028 -98171444 + Charlie1a DNA MER1_type 1330 1454 -1 298 230 11 0 chr11 50612158 50612245 -98171227 + L3 LINE CR1 1215 1302 -275 213 226 161 32 chr11 50612886 50612979 -98170493 + MIR SINE MIR 158 262 0 2200 121 0 3 chr11 50613755 50614053 -98169419 + AluSx SINE Alu 1 297 -15 1256 156 23 23 chr11 50614208 50614426 -98169046 + AluJb SINE Alu 85 302 -10 234 179 134 15 chr11 50614426 50614493 -98168979 + L1MC4 LINE L1 7968 8042 0 21 0 0 0 chr11 50614863 50614884 -98168588 + AT_rich Low_complexity Low_complexity 1 21 0 908 247 144 42 chr11 50615680 50616186 -98167286 - L2 LINE L2 -1 3312 2756 2105 131 7 7 chr11 50616216 50616514 -98166958 + AluSx SINE Alu 1 298 -14 1784 107 0 0 chr11 50616514 50616739 -98166733 + AluSg SINE Alu 1 225 -85 2079 121 3 0 chr11 50616877 50617175 -98166297 - AluSp SINE Alu -14 299 1 659 207 52 0 chr11 50617178 50617313 -98166159 + AluSg/x SINE Alu 160 301 -11 2188 114 3 10 chr11 50617474 50617772 -98165700 - AluSc SINE Alu -13 296 1 2143 135 0 0 chr11 50617775 50618071 -98165401 - AluJb SINE Alu -16 296 1 233 133 0 0 chr11 50618239 50618284 -98165188 + Alu SINE Alu 122 166 0 306 313 60 42 chr11 50618318 50618358 -98165114 - L2 LINE L2 -569 2745 2707 2321 96 3 0 chr11 50618358 50618651 -98164821 - AluSp SINE Alu -19 294 1 306 313 60 42 chr11 50618651 50618776 -98164696 - L2 LINE L2 -607 2707 2577 195 268 42 14 chr11 50618974 50619045 -98164427 + L3 LINE CR1 1457 1529 -48 202 206 0 0 chr11 50620259 50620293 -98163179 + (CA)n Simple_repeat Simple_repeat 1 34 0 31 26 0 0 chr11 50620330 50620368 -98163104 + AT_rich Low_complexity Low_complexity 1 38 0 2074 118 13 29 chr11 50620942 50621257 -98162215 - AluJo SINE Alu -2 310 1 509 304 85 7 chr11 50621319 50621589 -98161883 + L2 LINE L2 1945 2235 -1079 927 229 178 55 chr11 50621594 50621968 -98161504 + L2 LINE L2 260 701 -2613 1782 189 10 0 chr11 50621968 50622269 -98161203 + AluJo SINE Alu 1 304 -8 927 229 178 55 chr11 50622269 50622349 -98161123 + L2 LINE L2 701 770 -2544 3604 251 98 26 chr11 50622353 50622802 -98160670 + L2 LINE L2 1644 2059 -1254 804 209 40 76 chr11 50622802 50623027 -98160445 + MER20 DNA MER1_type 2 218 -1 3604 251 98 26 chr11 50623027 50623973 -98159499 + L2 LINE L2 2059 2935 -378 4075 94 18 0 chr11 50623973 50624395 -98159077 + MER41A LTR ERV1 1 437 -117 2242 108 3 10 chr11 50624395 50624700 -98158772 - AluSq SINE Alu -10 303 1 4075 94 18 0 chr11 50624700 50624821 -98158651 + MER41A LTR ERV1 437 554 0 3604 251 98 26 chr11 50624821 50624961 -98158511 + L2 LINE L2 2935 3063 -250 858 190 229 58 chr11 50624961 50625111 -98158361 - AluJb SINE Alu 0 302 179 1699 194 0 22 chr11 50625111 50625430 -98158042 + AluJb SINE Alu 1 312 0 858 190 229 58 chr11 50625430 50625537 -98157935 - AluJb SINE Alu -123 179 1 3604 251 98 26 chr11 50625537 50625557 -98157915 + L2 LINE L2 3063 3308 -5 575 311 65 51 chr11 50625555 50625925 -98157547 + L2 LINE L2 2236 2610 -704 * 879 155 43 64 chr11 50626025 50626212 -98157260 - L1PA16 LINE L1 -22 6144 5962 450 294 57 44 chr11 50626245 50626599 -98156873 + L2 LINE L2 2736 3092 -180 236 234 104 0 chr11 50626713 50626790 -98156682 + L2 LINE L2 3228 3312 -1 747 237 227 65 chr11 50628404 50628718 -98154754 + L2 LINE L2 816 1078 -2236 2005 105 0 37 chr11 50628718 50628825 -98154647 + AluSq SINE Alu 29 138 -175 2442 78 7 3 chr11 50628825 50629134 -98154338 + AluSg SINE Alu 1 310 0 2005 105 0 37 chr11 50629134 50629320 -98154152 + AluSq SINE Alu 138 311 -2 747 237 227 65 chr11 50629320 50629524 -98153948 + L2 LINE L2 1078 1418 -1896 917 203 106 13 chr11 50629524 50629760 -98153712 + AluJo SINE Alu 43 300 -12 2102 244 161 28 chr11 50629781 50630085 -98153387 + L2 LINE L2 1452 1714 -1600 468 0 0 0 chr11 50630085 50630137 -98153335 + (TA)n Simple_repeat Simple_repeat 2 53 0 2180 106 0 10 chr11 50630137 50630429 -98153043 - AluSq SINE Alu -24 289 1 2102 244 161 28 chr11 50630429 50630536 -98152936 + L2 LINE L2 1714 1805 -1509 1890 146 0 23 chr11 50630536 50630837 -98152635 - AluJo SINE Alu -18 294 1 2102 244 161 28 chr11 50630837 50631292 -98152180 + L2 LINE L2 1805 2436 -878 1405 107 0 11 chr11 50631292 50631479 -98151993 - AluY SINE Alu -126 185 1 382 300 62 33 chr11 50631574 50631847 -98151625 + L2 LINE L2 2224 2504 -810 742 272 98 13 chr11 50631849 50632124 -98151348 + MLT1H1 LTR MaLR 1 306 -284 390 222 0 6 chr11 50632158 50632247 -98151225 + MLT1G1 LTR MaLR 437 535 -60 640 105 0 48 chr11 50632248 50632268 -98151204 - AluSx SINE Alu -12 297 278 180 0 0 0 chr11 50632268 50632288 -98151184 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 640 105 0 48 chr11 50632288 50632372 -98151100 - AluSx SINE Alu -31 278 198 1022 75 0 0 chr11 50632372 50632492 -98150980 - AluSx SINE Alu -193 120 1 2214 99 0 10 chr11 50632888 50633182 -98150290 - AluSg SINE Alu -17 293 3 2198 115 0 7 chr11 50633184 50633489 -98149983 - AluSg SINE Alu -7 303 1 417 211 58 0 chr11 50633569 50633673 -98149799 + MER103 DNA DNA 11 120 -46 616 158 0 0 chr11 50633814 50633909 -98149563 + AluJ/FLAM SINE Alu 1 95 -217 2274 107 3 0 chr11 50634363 50634661 -98148811 - AluSx SINE Alu -13 299 1 266 86 0 0 chr11 50634696 50634731 -98148741 - AluSq/x SINE Alu -194 109 75 1160 141 73 41 chr11 50634738 50634958 -98148514 + AluJb SINE Alu 69 295 -17 2128 123 0 7 chr11 50635018 50635311 -98148161 - AluSx SINE Alu -21 291 1 2340 93 0 3 chr11 50636401 50636701 -98146771 - AluSx SINE Alu -13 299 1 2247 106 10 0 chr11 50636943 50637236 -98146236 + AluSx SINE Alu 9 304 -8 2396 102 0 0 chr11 50637236 50637539 -98145933 + AluSg SINE Alu 1 303 -7 521 207 50 0 chr11 50637813 50637934 -98145538 + MIR3 SINE MIR 51 177 -31 275 237 86 43 chr11 50638036 50638129 -98145343 + L1ME LINE L1 5600 5696 -425 2188 85 20 14 chr11 50638132 50638425 -98145047 + AluSx SINE Alu 4 298 -14 1097 172 170 60 chr11 50638450 50638590 -98144882 - L1MC3 LINE L1 0 7990 7867 3597 112 63 8 chr11 50638590 50639115 -98144357 + MER41C LTR ERV1 1 554 0 1097 172 170 60 chr11 50639115 50639163 -98144309 - L1MC3 LINE L1 -123 7867 7826 2155 120 0 0 chr11 50639163 50639446 -98144026 - AluSx SINE Alu -25 287 5 1097 172 170 60 chr11 50639446 50639514 -98143958 - L1MC3 LINE L1 -164 7826 7767 1459 153 0 0 chr11 50639514 50639723 -98143749 - AluJo SINE Alu -30 282 74 1097 172 170 60 chr11 50639723 50639947 -98143525 - L1MC3 LINE L1 -223 7767 6257 2328 84 0 14 chr11 50639954 50640250 -98143222 - AluSg SINE Alu -18 292 1 1783 109 8 0 chr11 50640358 50640596 -98142876 + AluSx SINE Alu 60 299 -13 433 200 82 53 chr11 50640759 50640929 -98142543 + L1ME4a LINE L1 5944 6118 -3 456 289 74 13 chr11 50641533 50641682 -98141790 + MIR SINE MIR 47 204 -58 202 345 47 35 chr11 50641873 50642044 -98141428 + L2 LINE L2 2826 2998 -274 243 151 0 75 chr11 50642148 50642201 -98141271 - L2 LINE L2 0 3313 3265 274 218 238 50 chr11 50642229 50642330 -98141142 + L2 LINE L2 3152 3271 -1 2249 111 0 0 chr11 50643166 50643473 -98139999 + AluSq SINE Alu 1 307 -6 1035 127 19 0 chr11 50643473 50643630 -98139842 + AluSg/x SINE Alu 132 291 -18 1220 188 3 123 chr11 50643651 50643784 -98139688 + AluJo SINE Alu 2 75 -227 2262 72 0 3 chr11 50643784 50644076 -98139396 + AluY SINE Alu 1 291 -20 1220 188 3 123 chr11 50644076 50644266 -98139206 + AluJo SINE Alu 75 286 -16 2020 117 3 3 chr11 50644790 50645089 -98138383 - AluSx SINE Alu -13 299 1 24 0 0 0 chr11 50645535 50645559 -98137913 + AT_rich Low_complexity Low_complexity 1 24 0 2121 100 0 3 chr11 50645568 50645858 -98137614 + AluSc SINE Alu 1 289 -20 507 82 0 0 chr11 50645958 50646031 -98137441 - L1MA5A LINE L1 -2 6295 6223 1107 79 0 20 chr11 50646031 50646183 -98137289 + AluJb SINE Alu 1 149 -163 330 192 51 26 chr11 50646287 50646365 -98137107 + MLT1K LTR MaLR 508 587 -1 1916 91 3 71 chr11 50646407 50646715 -98136757 - AluSx SINE Alu -17 295 9 197 302 38 57 chr11 50646830 50646936 -98136536 - L2 LINE L2 -578 2736 2633 186 191 0 0 chr11 50647239 50647286 -98136186 + T-rich Low_complexity Low_complexity 1 47 0 246 32 0 0 chr11 50647659 50647690 -98135782 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1876 117 0 11 chr11 50647692 50647966 -98135506 - AluSx SINE Alu -19 293 23 708 215 98 0 chr11 50648071 50648234 -98135238 - MIR SINE MIR 0 262 84 416 296 45 23 chr11 50649003 50649135 -98134337 + L2 LINE L2 3118 3252 -20 734 127 119 0 chr11 50649146 50649264 -98134208 + FLAM_C SINE Alu 1 132 -1 1164 138 0 0 chr11 50649312 50649493 -98133979 - AluSg/x SINE Alu -2 308 128 463 186 32 48 chr11 50649596 50649720 -98133752 + L2 LINE L2 3134 3255 -58 551 158 23 15 chr11 50649747 50649880 -98133592 + GA-rich Low_complexity Low_complexity 4 137 0 2062 105 3 3 chr11 50649999 50650293 -98133179 - AluSx SINE Alu -18 294 1 1786 113 27 14 chr11 50650298 50650590 -98132882 - L1MB3 LINE L1 0 6183 5888 713 218 96 0 chr11 50650700 50650856 -98132616 + MER45A DNA AcHobo 8 178 0 417 260 10 10 chr11 50650856 50650956 -98132516 + L2 LINE L2 2231 2330 -984 3590 111 143 38 chr11 50650963 50651929 -98131543 + MER11A LTR ERVK 1 1142 -94 2212 95 0 0 chr11 50651929 50652224 -98131248 + AluY SINE Alu 1 295 -16 3590 111 143 38 chr11 50652224 50652326 -98131146 + MER11A LTR ERVK 1142 1232 -4 891 216 94 9 chr11 50652334 50652547 -98130925 + AluJo SINE Alu 1 231 -81 1390 156 43 0 chr11 50652550 50652781 -98130691 + AluSx SINE Alu 3 243 -69 32 0 0 0 chr11 50652801 50652833 -98130639 + AT_rich Low_complexity Low_complexity 1 32 0 1231 234 35 0 chr11 50653016 50653273 -98130199 + LTR53 LTR ERVL 254 519 0 2007 131 10 0 chr11 50653300 50653597 -98129875 + AluSx SINE Alu 1 300 -12 1980 118 3 10 chr11 50654012 50654308 -98129164 + AluSq SINE Alu 1 294 -19 197 250 0 0 chr11 50654331 50654375 -98129097 + L2 LINE L2 3211 3254 -18 1585 162 9 41 chr11 50654510 50654939 -98128533 + AluJb SINE Alu 1 419 0 201 74 0 0 chr11 50654946 50654973 -98128499 + (GGGGA)n Simple_repeat Simple_repeat 5 31 0 347 248 9 64 chr11 50655017 50655126 -98128346 + MIR SINE MIR 159 261 -1 2079 136 0 3 chr11 50656337 50656647 -98126825 + AluSx SINE Alu 1 309 -3 2121 101 7 0 chr11 50656798 50657095 -98126377 - AluSp SINE Alu -10 303 5 271 86 0 0 chr11 50657198 50657233 -98126239 - MER74A LTR ERVL -244 314 280 756 205 46 13 chr11 50657233 50657384 -98126088 + FRAM SINE Alu 1 154 -22 1916 103 25 121 chr11 50657415 50657780 -98125692 + L1MB5 LINE L1 5799 6197 23 2036 119 0 3 chr11 50657780 50658073 -98125399 - AluSq SINE Alu -21 292 1 827 143 0 30 chr11 50658073 50658206 -98125266 - AluJo/FLAM SINE Alu -172 130 2 1916 103 25 121 chr11 50658206 50658245 -98125227 + L1MB5 LINE L1 6124 6165 -9 286 31 0 0 chr11 50658473 50658505 -98124967 - U2 snRNA snRNA -152 36 5 1851 220 67 53 chr11 50658510 50658736 -98124736 - MLT1E LTR MaLR 0 593 372 2377 83 0 3 chr11 50658736 50659048 -98124424 - AluSp SINE Alu -2 311 1 1851 220 67 53 chr11 50659048 50659330 -98124142 - MLT1E LTR MaLR -221 372 78 481 215 5 153 chr11 50659398 50659607 -98123865 - MIR SINE MIR -13 249 72 189 289 58 0 chr11 50659642 50659694 -98123778 - MIR SINE MIR -161 101 47 2094 114 0 13 chr11 50660081 50660387 -98123085 + AluSx SINE Alu 1 302 -10 1913 96 14 38 chr11 50660516 50660837 -98122635 + AluSx SINE Alu 1 314 0 1206 99 0 0 chr11 50660839 50661001 -98122471 + AluSg/x SINE Alu 133 294 -16 268 151 123 14 chr11 50661005 50661078 -98122394 - L1ME LINE L1 -252 5869 5789 2183 130 0 0 chr11 50661286 50661594 -98121878 + AluSx SINE Alu 1 308 -4 327 313 99 23 chr11 50661728 50661861 -98121611 - MIR SINE MIR -63 145 20 477 198 21 0 chr11 50661881 50661977 -98121495 + MER5A DNA MER1_type 15 112 -77 200 294 39 0 chr11 50662349 50662400 -98121072 + MIR SINE MIR 51 103 -105 193 358 0 45 chr11 50662678 50662745 -98120727 + L3 LINE CR1 1513 1576 -1 990 118 0 6 chr11 50662860 50663029 -98120443 + L1MA7 LINE L1 6124 6291 0 1994 113 4 0 chr11 50663035 50663309 -98120163 + AluSx SINE Alu 1 275 -37 212 0 36 0 chr11 50663317 50663345 -98120127 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 186 43 0 0 chr11 50663344 50663367 -98120105 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 306 302 131 37 chr11 50663374 50663619 -98119853 - L2 LINE L2 -201 3071 2804 1982 94 0 50 chr11 50664394 50664692 -98118780 + AluSq SINE Alu 7 289 -24 23 0 0 0 chr11 50664693 50664716 -98118756 + AT_rich Low_complexity Low_complexity 1 23 0 1812 109 0 0 chr11 50665018 50665275 -98118197 - AluSx SINE Alu -18 294 38 1970 93 61 0 chr11 50665322 50665601 -98117871 - AluSp SINE Alu -17 296 1 622 279 22 33 chr11 50665603 50665786 -98117686 + MIR SINE MIR 77 257 -5 633 117 11 0 chr11 50665855 50665949 -98117523 + L1MCa LINE L1 20 114 -6312 5403 90 24 6 chr11 50665949 50666794 -98116678 + SVA Other Other 9 868 -518 3320 92 75 20 chr11 50666838 50667425 -98116047 + SVA Other Other 429 1047 -339 474 160 62 113 chr11 50667435 50667566 -98115906 + L1MCa LINE L1 1741 1860 -4566 885 129 0 50 chr11 50667566 50667706 -98115766 + FLAM_A SINE Alu 1 133 0 474 160 62 113 chr11 50667706 50667768 -98115704 + L1MCa LINE L1 1860 1924 -4502 732 162 7 29 chr11 50667768 50667904 -98115568 - FLAM_C SINE Alu -7 136 4 2913 116 60 10 chr11 50667908 50668425 -98115047 + L1MCa LINE L1 1936 2478 -3948 5971 233 31 22 chr11 50668462 50669177 -98114295 + L1MCa LINE L1 2469 3176 -3250 1967 131 0 7 chr11 50669177 50669474 -98113998 + AluSx SINE Alu 1 295 -17 5971 233 31 22 chr11 50669474 50669703 -98113769 + L1MCa LINE L1 3176 3401 -3025 2023 125 0 13 chr11 50669703 50670006 -98113466 + AluSx SINE Alu 1 299 -13 5971 233 31 22 chr11 50670006 50670227 -98113245 + L1MCa LINE L1 3401 3618 -2808 1406 189 40 111 chr11 50670227 50670651 -98112821 - MSTD LTR MaLR -2 394 1 5971 233 31 22 chr11 50670651 50670760 -98112712 + L1MCa LINE L1 3618 3724 -2702 3477 114 6 10 chr11 50670760 50671276 -98112196 - MER75 DNA T2_type 0 514 1 5971 233 31 22 chr11 50671276 50671662 -98111810 + L1MCa LINE L1 3724 4148 -2278 554 66 0 0 chr11 50671665 50671741 -98111731 + Alu SINE Alu 235 310 -2 244 263 0 0 chr11 50671741 50671798 -98111674 + L1MCa LINE L1 4236 4292 -2134 1854 115 32 0 chr11 50671798 50672121 -98111351 + AluSx SINE Alu 1 332 0 1406 136 31 66 chr11 50672244 50672569 -98110903 + AluSx SINE Alu 7 321 0 398 307 40 22 chr11 50672850 50673078 -98110394 - L1ME4a LINE L1 -247 5874 5643 303 241 348 0 chr11 50673094 50673206 -98110266 - MIR SINE MIR 0 262 112 2096 109 7 0 chr11 50673625 50673919 -98109553 + AluSp SINE Alu 1 296 -17 2417 62 0 7 chr11 50673919 50674224 -98109248 + AluY SINE Alu 1 303 -8 410 254 17 104 chr11 50674237 50674477 -98108995 + MIR SINE MIR 20 238 -24 999 179 42 16 chr11 50674929 50675119 -98108353 - MER20 DNA MER1_type 0 219 25 222 189 0 13 chr11 50675430 50675474 -98107998 + MIR SINE MIR 113 154 -108 981 191 25 5 chr11 50676102 50676306 -98107166 + L1MA4 LINE L1 6063 6270 -30 258 145 232 0 chr11 50676316 50676385 -98107087 - MIR SINE MIR -109 153 69 412 329 52 0 chr11 50676408 50676563 -98106909 + MIR SINE MIR 80 242 -20 229 156 44 0 chr11 50676910 50676955 -98106517 - MIR3 SINE MIR -11 197 151 456 224 40 72 chr11 50676975 50677127 -98106345 + MER117 DNA MER1_type 51 197 0 202 333 77 0 chr11 50677267 50677345 -98106127 - L3 LINE CR1 -113 1464 1381 444 230 69 81 chr11 50677394 50677568 -98105904 + MER5B DNA MER1_type 7 178 0 1918 103 0 7 chr11 50677724 50678005 -98105467 - AluSx SINE Alu -3 309 31 1755 151 0 16 chr11 50678017 50678322 -98105150 - AluJo SINE Alu -12 300 1 292 276 63 92 chr11 50678333 50678572 -98104900 + L2 LINE L2 2706 2937 -377 1809 159 10 10 chr11 50678859 50679168 -98104304 - AluSx SINE Alu -3 309 1 324 0 0 0 chr11 50679225 50679261 -98104211 + (TG)n Simple_repeat Simple_repeat 2 37 0 491 230 79 26 chr11 50679311 50679463 -98104009 + MIR SINE MIR 20 179 -83 * 817 281 35 22 chr11 50679439 50679670 -98103802 - MIR SINE MIR 0 262 29 2161 107 0 0 chr11 50680004 50680303 -98103169 - AluSx SINE Alu -13 299 1 219 256 12 49 chr11 50680368 50680450 -98103022 - L2 LINE L2 -14 3299 3221 21 0 0 0 chr11 50680744 50680765 -98102707 + AT_rich Low_complexity Low_complexity 1 21 0 463 328 103 29 chr11 50680991 50681342 -98102130 - L1ME4a LINE L1 -266 5855 5479 22 35 0 0 chr11 50681342 50681371 -98102101 + AT_rich Low_complexity Low_complexity 1 29 0 1992 120 7 0 chr11 50681382 50681665 -98101807 - AluSq SINE Alu -28 285 1 23 33 0 0 chr11 50681782 50681812 -98101660 + AT_rich Low_complexity Low_complexity 1 30 0 199 256 131 144 chr11 50682091 50682251 -98101221 + MIR SINE MIR 30 187 -75 2548 193 8 32 chr11 50682738 50682809 -98100663 - L1MB7 LINE L1 -5 6179 6108 2131 115 0 0 chr11 50682809 50683104 -98100368 + AluSx SINE Alu 1 295 -17 2548 193 8 32 chr11 50683104 50683567 -98099905 - L1MB7 LINE L1 -76 6108 5658 371 215 151 0 chr11 50683700 50683793 -98099679 - MIR SINE MIR -90 172 66 269 287 116 16 chr11 50683979 50684108 -98099364 + MIR3 SINE MIR 5 146 -62 216 235 0 0 chr11 50684143 50684211 -98099261 + GA-rich Low_complexity Low_complexity 1 68 0 2324 67 0 25 chr11 50684959 50685275 -98098197 - AluY SINE Alu -3 308 1 1717 138 71 0 chr11 50685280 50685563 -98097909 - AluSx SINE Alu -9 303 1 637 208 88 6 chr11 50685688 50685847 -98097625 - MIR3 SINE MIR -22 186 15 2247 71 0 0 chr11 50686120 50686422 -98097050 - AluSg1 SINE Alu 0 302 1 2180 115 0 0 chr11 50686424 50686729 -98096743 - AluSq SINE Alu -8 305 1 236 323 192 0 chr11 50687007 50687174 -98096298 + L1ME LINE L1 5730 5928 -193 1997 134 0 0 chr11 50687178 50687470 -98096002 + AluSx SINE Alu 1 292 -20 611 235 95 11 chr11 50687528 50687707 -98095765 + MIR SINE MIR 2 195 -67 195 176 118 39 chr11 50688017 50688035 -98095437 + L2 LINE L2 3214 3229 -43 1934 100 11 4 chr11 50688035 50688340 -98095132 - AluSx SINE Alu 0 307 1 195 176 118 39 chr11 50688340 50688371 -98095101 + L2 LINE L2 3229 3268 -4 2069 118 7 3 chr11 50688396 50688700 -98094772 - AluSx SINE Alu -7 305 1 225 0 0 0 chr11 50688700 50688725 -98094747 + (TTA)n Simple_repeat Simple_repeat 2 26 0 529 243 0 0 chr11 50688725 50688828 -98094644 - FLAM_A SINE Alu -24 118 16 251 275 22 44 chr11 50689187 50689278 -98094194 + MIR SINE MIR 19 107 -155 1587 166 16 39 chr11 50689521 50689828 -98093644 - AluJb SINE Alu -12 300 1 314 358 50 0 chr11 50690252 50690372 -98093100 - L2 LINE L2 -5 3267 3142 399 99 14 28 chr11 50690620 50690691 -98092781 - L1MB8 LINE L1 -5 6173 6104 2080 118 3 0 chr11 50690692 50690988 -98092484 + AluSx SINE Alu 6 302 -10 352 283 85 0 chr11 50692118 50692224 -98091248 + MER103 DNA DNA 8 122 -44 609 269 8 0 chr11 50692330 50692464 -98091008 - L2 LINE L2 0 3313 3179 369 269 96 39 chr11 50692463 50692560 -98090912 - MIR SINE MIR -6 256 166 * 207 0 0 0 chr11 50692560 50692583 -98090889 + (TTTTA)n Simple_repeat Simple_repeat 5 27 0 2109 91 0 21 chr11 50692583 50692870 -98090602 - AluSq SINE Alu -32 281 1 369 269 96 39 chr11 50692870 50692927 -98090545 - MIR SINE MIR -95 167 92 229 266 62 53 chr11 50693439 50693459 -98090013 - MIR3 SINE MIR -98 110 92 2043 104 90 10 chr11 50693459 50693748 -98089724 + AluSx SINE Alu 1 312 0 229 266 62 53 chr11 50693748 50693861 -98089611 - MIR3 SINE MIR -116 92 5 239 170 0 57 chr11 50694218 50694271 -98089201 - MIR SINE MIR -70 138 89 394 255 122 56 chr11 50694389 50694585 -98088887 + MIR SINE MIR 20 228 -34 241 286 32 40 chr11 50694656 50694782 -98088690 - MIR SINE MIR 0 262 138 760 177 28 14 chr11 50694784 50694925 -98088547 - FLAM_C SINE Alu 0 143 1 289 324 19 19 chr11 50694926 50695034 -98088438 - MIR SINE MIR -111 151 44 227 324 45 0 chr11 50695240 50695351 -98088121 + MIR SINE MIR 110 225 -37 292 262 47 20 chr11 50695898 50696047 -98087425 - L1ME4a LINE L1 -5 6116 5964 269 109 22 0 chr11 50696853 50696899 -98086573 + (TG)n Simple_repeat Simple_repeat 2 48 0 2270 82 0 4 chr11 50698958 50699238 -98084234 + AluSx SINE Alu 2 280 -32 418 16 0 33 chr11 50699242 50699303 -98084169 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 225 0 0 0 chr11 50699626 50699651 -98083821 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1020 220 52 13 chr11 50699791 50700023 -98083449 + MIR SINE MIR 18 258 -4 2443 84 3 0 chr11 50700040 50700337 -98083135 + AluSp SINE Alu 3 300 -13 364 245 98 28 chr11 50700353 50700496 -98082976 + MIR3 SINE MIR 4 156 -52 2201 113 0 0 chr11 50701357 50701675 -98081797 + AluSg SINE Alu 1 318 0 26 0 0 0 chr11 50701841 50701867 -98081605 + AT_rich Low_complexity Low_complexity 1 26 0 2180 139 0 0 chr11 50702036 50702345 -98081127 - AluSx SINE Alu -3 309 1 200 256 110 61 chr11 50702673 50702755 -98080717 + L2 LINE L2 3166 3251 -21 331 239 361 0 chr11 50703117 50703247 -98080225 - Charlie8 DNA MER1_type -2167 250 74 407 333 82 61 chr11 50703655 50704082 -98079390 + L2 LINE L2 2816 3251 -21 1773 114 118 4 chr11 50704331 50704594 -98078878 - AluSg1 SINE Alu -16 293 1 1034 106 0 12 chr11 50704594 50704754 -98078718 - L1PB1 LINE L1 -47 6104 5947 2474 74 0 10 chr11 50704843 50705152 -98078320 - AluY SINE Alu -5 306 1 2015 125 7 4 chr11 50705356 50705635 -98077837 + AluSx SINE Alu 3 282 -30 2539 51 0 3 chr11 50705735 50706028 -98077444 - AluY SINE Alu -19 292 1 2196 112 0 34 chr11 50706036 50706358 -98077114 - AluSx SINE Alu -1 311 1 2054 131 7 3 chr11 50706697 50706987 -98076485 - AluSq SINE Alu -22 291 1 426 69 0 0 chr11 50707426 50707484 -98075988 + (CA)n Simple_repeat Simple_repeat 2 59 0 544 292 68 16 chr11 50708195 50708387 -98075085 + MIR SINE MIR 49 250 -12 1250 156 0 5 chr11 50708392 50708603 -98074869 - AluSg/x SINE Alu 0 307 98 1583 99 0 0 chr11 50708703 50708904 -98074568 - AluSg SINE Alu -109 201 1 273 252 82 59 chr11 50709020 50709155 -98074317 - MER5A DNA MER1_type -45 144 7 23 33 0 0 chr11 50709191 50709221 -98074251 + AT_rich Low_complexity Low_complexity 1 30 0 1666 192 3 17 chr11 50709221 50709518 -98073954 - AluJb SINE Alu -19 293 1 886 146 0 0 chr11 50709524 50709654 -98073818 - AluJo SINE Alu -178 134 5 449 274 46 13 chr11 50709801 50709954 -98073518 - MIR SINE MIR -24 238 81 2587 61 0 6 chr11 50710210 50710523 -98072949 - AluY SINE Alu 0 311 1 1791 125 99 0 chr11 50710525 50710797 -98072675 - AluSx SINE Alu -9 303 5 489 248 8 8 chr11 50710890 50711011 -98072461 - MIR3 SINE MIR -3 205 85 1875 165 0 28 chr11 50711185 50711506 -98071966 + AluJb SINE Alu 1 312 0 2342 98 0 3 chr11 50711794 50712090 -98071382 - AluSq SINE Alu -18 295 1 1884 131 41 48 chr11 50712107 50712421 -98071051 - AluSx SINE Alu 0 312 1 266 192 82 0 chr11 50712663 50712736 -98070736 - MIR3 SINE MIR -19 189 111 2282 123 0 0 chr11 50712736 50713045 -98070427 + AluSg SINE Alu 1 309 -1 3604 154 35 56 chr11 50713137 50713598 -98069874 + MER44D DNA MER2_type 2 471 -2116 2140 116 7 3 chr11 50713598 50713891 -98069581 + AluSx SINE Alu 1 294 -18 3604 154 35 56 chr11 50713891 50714054 -98069418 + MER44D DNA MER2_type 471 612 -1975 1996 134 27 17 chr11 50714054 50714352 -98069120 + AluJb SINE Alu 1 301 -11 3604 154 35 56 chr11 50714352 50714445 -98069027 + MER44D DNA MER2_type 612 705 0 1057 134 21 10 chr11 50714675 50714869 -98068603 + MSTA LTR MaLR 1 196 -232 2460 94 0 0 chr11 50714870 50715167 -98068305 + AluSx SINE Alu 2 298 -14 1333 68 12 0 chr11 50715167 50715330 -98068142 + AluSg/x SINE Alu 132 296 -14 1055 221 25 4 chr11 50715331 50715566 -98067906 + MSTA LTR MaLR 189 428 0 2326 105 3 3 chr11 50715613 50715917 -98067555 + AluSx SINE Alu 1 304 -8 2235 98 3 7 chr11 50716270 50716587 -98066885 + AluSq SINE Alu 1 316 0 317 219 0 0 chr11 50716609 50716673 -98066799 - MLT1K LTR MaLR -339 249 186 730 216 0 0 chr11 50716703 50716828 -98066644 + FLAM_A SINE Alu 2 126 -7 2304 102 0 3 chr11 50716913 50717208 -98066264 + AluSg SINE Alu 1 294 -16 180 274 82 41 chr11 50717291 50717364 -98066108 - MIR SINE MIR -113 95 20 280 288 14 0 chr11 50717997 50718070 -98065402 + L1ME LINE L1 5524 5597 -524 1925 169 0 0 chr11 50718076 50718372 -98065100 + AluJb SINE Alu 1 296 -16 1991 155 0 23 chr11 50718376 50718685 -98064787 + AluJo SINE Alu 1 302 -10 836 163 0 0 chr11 50718691 50718814 -98064658 + FLAM_C SINE Alu 1 123 -20 278 224 141 12 chr11 50719227 50719312 -98064160 - MLT1L LTR MaLR -297 318 223 2291 112 0 6 chr11 50719420 50719732 -98063740 - AluSg SINE Alu 0 310 1 2337 119 0 3 chr11 50719732 50720043 -98063429 - AluSq SINE Alu -2 311 1 2157 146 7 0 chr11 50720052 50720361 -98063111 - AluJb SINE Alu 0 312 2 264 189 38 0 chr11 50720378 50720431 -98063041 - MLT1L LTR MaLR -560 55 1 2132 118 0 35 chr11 50720462 50720777 -98062695 - AluSx SINE Alu -8 304 1 2336 108 0 3 chr11 50721161 50721467 -98062005 + AluSq SINE Alu 1 305 -8 222 272 138 40 chr11 50721497 50721692 -98061780 + L2 LINE L2 2731 2958 -314 539 217 98 28 chr11 50721709 50721852 -98061620 + MIR SINE MIR 110 262 0 2335 98 0 3 chr11 50721871 50722176 -98061296 - AluSq SINE Alu -9 304 1 1132 133 12 0 chr11 50722178 50722344 -98061128 - AluJb SINE Alu -17 295 128 526 216 142 0 chr11 50722980 50723128 -98060344 + MIR SINE MIR 6 174 -88 227 273 76 0 chr11 50723155 50723221 -98060251 + L2 LINE L2 2890 2960 -354 2063 135 17 0 chr11 50723226 50723523 -98059949 - AluSx SINE Alu -10 302 1 835 251 136 31 chr11 50723527 50723850 -98059622 + L2 LINE L2 2940 3296 -17 1857 147 6 32 chr11 50723856 50724170 -98059302 + AluJo SINE Alu 1 306 -6 959 218 5 64 chr11 50724170 50724302 -98059170 + AluJb SINE Alu 1 139 -173 2259 109 0 22 chr11 50724302 50724615 -98058857 + AluSx SINE Alu 1 306 -6 1597 113 0 5 chr11 50724619 50724831 -98058641 + AluSg/x SINE Alu 86 296 -16 959 218 5 64 chr11 50724831 50724913 -98058559 + AluJb SINE Alu 142 207 -105 246 32 0 0 chr11 50724942 50724973 -98058499 + (TG)n Simple_repeat Simple_repeat 2 32 0 293 263 203 23 chr11 50726016 50726149 -98057323 + MIR SINE MIR 34 190 -72 2423 55 7 0 chr11 50726255 50726546 -98056926 + AluSp SINE Alu 1 293 -20 414 0 0 0 chr11 50726741 50726787 -98056685 + (TG)n Simple_repeat Simple_repeat 2 47 0 2134 94 0 4 chr11 50726803 50727069 -98056403 - AluSq SINE Alu -48 265 1 1513 158 96 15 chr11 50727095 50727367 -98056105 - AluJb SINE Alu -18 294 1 269 275 66 33 chr11 50727920 50728011 -98055461 + MIR SINE MIR 20 113 -95 216 220 0 85 chr11 50728077 50728136 -98055336 + MIR3 SINE MIR 124 177 -31 566 301 23 32 chr11 50728211 50728430 -98055042 + MIR SINE MIR 21 237 -25 511 291 167 35 chr11 50728716 50728876 -98054596 + L2 LINE L2 2995 3133 -180 219 103 0 0 chr11 50728876 50728915 -98054557 + (CA)n Simple_repeat Simple_repeat 2 40 0 511 291 167 35 chr11 50728915 50729036 -98054436 + L2 LINE L2 3133 3313 0 2575 69 0 0 chr11 50729038 50729344 -98054128 + AluSp SINE Alu 1 306 -7 967 144 0 0 chr11 50729510 50729656 -98053816 + FRAM SINE Alu 30 175 -1 393 191 43 78 chr11 50729767 50729882 -98053590 + MIR3 SINE MIR 87 197 -11 2192 122 0 3 chr11 50729900 50730195 -98053277 - AluSx SINE Alu -18 294 1 2125 140 7 3 chr11 50730472 50730779 -98052693 - AluJb SINE Alu -4 308 1 874 244 115 114 chr11 50731056 50731091 -98052381 - L2 LINE L2 -1 3312 3279 2218 108 3 10 chr11 50731091 50731386 -98052086 - AluSx SINE Alu -19 293 1 874 244 115 114 chr11 50731386 50731914 -98051558 - L2 LINE L2 -34 3279 2753 2190 133 0 3 chr11 50731914 50732216 -98051256 + AluJb SINE Alu 1 301 -11 1911 150 7 0 chr11 50732224 50732497 -98050975 + AluJb SINE Alu 6 280 -32 874 244 115 114 chr11 50732497 50732625 -98050847 - L2 LINE L2 -566 2747 2621 2337 86 6 46 chr11 50732625 50732950 -98050522 + AluSx SINE Alu 1 312 0 874 244 115 114 chr11 50732950 50733112 -98050360 - L2 LINE L2 -692 2621 2464 204 282 58 0 chr11 50733150 50733235 -98050237 + CT-rich Low_complexity Low_complexity 4 97 -15 2121 121 3 26 chr11 50733235 50733541 -98049931 - AluSx SINE Alu 0 312 14 204 282 58 0 chr11 50733541 50733558 -98049914 + CT-rich Low_complexity Low_complexity 97 112 0 774 147 0 0 chr11 50733579 50733688 -98049784 - FLAM_C SINE Alu -33 110 2 291 239 45 11 chr11 50734002 50734090 -98049382 + MIR SINE MIR 168 258 -4 1549 134 19 104 chr11 50734098 50734250 -98049222 + MER2 DNA MER2_type 1 164 -181 2314 82 0 7 chr11 50734250 50734544 -98048928 - AluSc SINE Alu -17 292 1 1549 134 19 104 chr11 50734544 50734757 -98048715 + MER2 DNA MER2_type 164 335 -10 2177 103 3 13 chr11 50734784 50735086 -98048386 - AluSx SINE Alu -9 303 5 325 276 48 0 chr11 50735114 50735219 -98048253 + MIR SINE MIR 68 177 -85 584 161 8 40 chr11 50735541 50735698 -98047774 - L1MD3 LINE L1 0 8040 7880 1087 67 15 0 chr11 50735729 50735864 -98047608 - AluSp/q SINE Alu -13 300 164 1105 111 0 0 chr11 50736048 50736192 -98047280 + AluSg SINE Alu 1 144 -166 880 106 0 32 chr11 50736205 50736328 -98047144 - AluSp SINE Alu -194 119 1 607 106 0 0 chr11 50736337 50736422 -98047050 - AluSp/q SINE Alu -9 304 220 1846 169 10 3 chr11 50736558 50736848 -98046624 + AluJo SINE Alu 21 312 0 1118 113 23 17 chr11 50737029 50737206 -98046266 + AluSc SINE Alu 132 309 0 2366 111 0 9 chr11 50737218 50737533 -98045939 + AluSx SINE Alu 1 312 0 182 349 31 54 chr11 50737787 50737916 -98045556 + L2 LINE L2 3136 3261 -11 346 309 32 8 chr11 50738173 50738299 -98045173 + MIR SINE MIR 123 251 -11 2261 70 3 14 chr11 50738440 50738748 -98044724 + AluY SINE Alu 1 305 0 741 137 8 24 chr11 50738754 50738878 -98044594 + FLAM_A SINE Alu 1 122 -11 216 24 73 0 chr11 50738878 50738919 -98044553 + (TA)n Simple_repeat Simple_repeat 1 44 0 308 165 127 25 chr11 50738922 50739001 -98044471 - L1MCa LINE L1 -4362 2064 1978 211 105 35 18 chr11 50739001 50739058 -98044414 + (TATAA)n Simple_repeat Simple_repeat 5 62 0 1052 154 12 0 chr11 50739080 50739242 -98044230 + AluJo SINE Alu 125 288 -24 278 214 0 0 chr11 50739280 50739358 -98044114 + MER3 DNA MER1_type 79 159 -3 1978 135 7 0 chr11 50739358 50739640 -98043832 - AluSx SINE Alu -26 286 3 363 115 0 115 chr11 50739641 50739655 -98043817 + MER3 DNA MER1_type 133 147 -62 2172 138 0 0 chr11 50739655 50739952 -98043520 - AluSx SINE Alu -15 297 1 363 115 0 115 chr11 50739952 50740024 -98043448 + MER3 DNA MER1_type 147 209 0 2534 47 0 3 chr11 50740558 50740857 -98042615 + AluY SINE Alu 1 298 -13 349 299 11 0 chr11 50740874 50740961 -98042511 - MIR3 SINE MIR -7 201 114 1035 136 83 6 chr11 50741037 50741206 -98042266 + AluSq SINE Alu 123 304 -9 2326 116 0 0 chr11 50741435 50741745 -98041727 + AluSg SINE Alu 1 310 0 818 248 79 0 chr11 50742008 50742222 -98041250 + MIR SINE MIR 31 261 -1 39 22 0 0 chr11 50742284 50742330 -98041142 + AT_rich Low_complexity Low_complexity 1 46 0 2182 113 0 32 chr11 50742341 50742652 -98040820 + AluSg SINE Alu 1 301 -9 2107 119 4 0 chr11 50742753 50743030 -98040442 - AluSp SINE Alu -35 278 1 29 0 0 0 chr11 50743323 50743352 -98040120 + AT_rich Low_complexity Low_complexity 1 29 0 716 139 9 0 chr11 50743389 50743497 -98039975 - FLAM_C SINE Alu -34 109 1 290 277 89 36 chr11 50743531 50743643 -98039829 + MIR SINE MIR 12 129 -133 316 256 346 6 chr11 50743699 50743855 -98039617 - MIR SINE MIR -39 223 15 844 258 36 44 chr11 50743945 50744197 -98039275 + MIR SINE MIR 13 262 0 1665 133 27 23 chr11 50744323 50744623 -98038849 + AluSg SINE Alu 1 301 -9 621 209 87 12 chr11 50744790 50744962 -98038510 - HsTC2 DNA Tc2 -4 1894 1710 996 275 43 10 chr11 50744963 50745268 -98038204 - HsTC2 DNA Tc2 -1579 319 5 1949 145 0 0 chr11 50745361 50745664 -98037808 - AluSx SINE Alu -8 304 2 862 234 44 25 chr11 50745708 50746098 -98037374 - MLT1J1 LTR MaLR 0 446 5 573 288 56 6 chr11 50746119 50746279 -98037193 - MIR SINE MIR -38 224 57 344 242 10 20 chr11 50746639 50746738 -98036734 + L1MC5 LINE L1 7499 7596 -365 1684 179 3 0 chr11 50746747 50747049 -98036423 + AluJb SINE Alu 5 307 -5 368 126 54 9 chr11 50747110 50747221 -98036251 + (TA)n Simple_repeat Simple_repeat 1 116 0 1768 143 0 4 chr11 50747226 50747492 -98035980 - AluSx SINE Alu -47 265 1 728 155 0 9 chr11 50747520 50747636 -98035836 - FLAM_C SINE Alu -17 116 2 293 184 18 149 chr11 50747721 50747835 -98035637 + L2 LINE L2 3126 3224 -89 1011 164 0 0 chr11 50747839 50748004 -98035468 - AluJo/FRAM SINE Alu -14 298 134 1539 150 46 65 chr11 50748004 50748171 -98035301 - AluSx SINE Alu -12 300 131 2341 65 0 0 chr11 50748171 50748463 -98035009 - AluY SINE Alu -17 294 3 2318 65 0 16 chr11 50748469 50748777 -98034695 - AluY SINE Alu -8 303 1 1539 150 46 65 chr11 50748777 50748908 -98034564 - AluSx SINE Alu -186 126 1 214 309 29 15 chr11 50748908 50748976 -98034496 + L2 LINE L2 3177 3245 -27 1614 166 0 44 chr11 50749436 50749731 -98033741 - AluJo SINE Alu -30 282 1 2154 113 3 0 chr11 50749772 50750081 -98033391 - AluSx SINE Alu -2 310 1 508 304 108 32 chr11 50750108 50750296 -98033176 - L1ME4a LINE L1 -5 6116 5903 1963 126 7 0 chr11 50750296 50750582 -98032890 - AluSp SINE Alu -25 288 1 508 304 108 32 chr11 50750582 50750643 -98032829 - L1ME4a LINE L1 -218 5903 5848 870 195 18 0 chr11 50750671 50750835 -98032637 - FRAM SINE Alu -15 161 1 2163 98 3 16 chr11 50750849 50751165 -98032307 + AluSp SINE Alu 1 312 -1 767 232 0 0 chr11 50751298 50751453 -98032019 + L1M4 LINE L1 3714 3868 -2278 558 65 0 0 chr11 50751456 50751533 -98031939 + Alu SINE Alu 235 311 -1 1553 230 5 53 chr11 50751533 50751590 -98031882 + L1M4 LINE L1 3956 4014 -2132 1854 115 32 0 chr11 50751590 50751921 -98031551 + AluSx SINE Alu 1 340 0 1553 230 5 53 chr11 50751921 50752279 -98031193 + L1M4 LINE L1 4014 4353 -1793 1294 170 9 0 chr11 50752284 50752514 -98030958 - AluJb SINE Alu -15 297 66 319 152 0 152 chr11 50752523 50752602 -98030870 + AluJ/FLAM SINE Alu 21 87 -215 525 192 22 88 chr11 50752602 50752689 -98030783 + L1M4 LINE L1 4370 4440 -1706 2057 108 3 19 chr11 50752689 50752996 -98030476 + AluSx SINE Alu 3 304 -8 525 192 22 88 chr11 50752996 50753090 -98030382 + L1M4 LINE L1 4440 4539 -1607 433 284 60 44 chr11 50753583 50753766 -98029706 + MER5A DNA MER1_type 4 189 0 341 275 58 92 chr11 50753986 50754106 -98029366 + MER91A DNA MER1_type 1 116 -80 2122 107 0 3 chr11 50754131 50754430 -98029042 + AluSx SINE Alu 1 298 -14 315 0 0 0 chr11 50754443 50754478 -98028994 + (TAGA)n Simple_repeat Simple_repeat 3 37 0 200 174 0 0 chr11 50754479 50754492 -98028980 + (TA)n Simple_repeat Simple_repeat 1 13 -33 186 43 0 0 chr11 50754492 50754515 -98028957 + (CA)n Simple_repeat Simple_repeat 2 24 0 200 174 0 0 chr11 50754515 50754547 -98028925 + (TA)n Simple_repeat Simple_repeat 12 46 0 1418 160 19 77 chr11 50754549 50754861 -98028611 - AluJo SINE Alu -17 295 2 219 174 43 0 chr11 50754866 50754912 -98028560 + MER91A DNA MER1_type 143 190 0 1762 86 4 12 chr11 50754920 50755185 -98028287 + AluSp SINE Alu 57 313 0 224 370 127 58 chr11 50755350 50755642 -98027830 + L2 LINE L2 2961 3272 0 213 282 0 0 chr11 50755768 50755853 -98027619 + (TA)n Simple_repeat Simple_repeat 1 85 0 2217 97 10 0 chr11 50755919 50756229 -98027243 + AluSp SINE Alu 1 313 0 1864 148 3 0 chr11 50756597 50756901 -98026571 - AluSx SINE Alu -7 305 1 688 129 97 16 chr11 50756901 50757025 -98026447 - AluJo SINE Alu -177 135 2 1567 186 38 51 chr11 50757074 50757230 -98026242 + MLT1A1 LTR MaLR 1 158 -207 2204 107 3 3 chr11 50757230 50757540 -98025932 + AluSx SINE Alu 3 312 0 1567 186 38 51 chr11 50757540 50757753 -98025719 + MLT1A1 LTR MaLR 158 365 0 2031 110 7 0 chr11 50758083 50758375 -98025097 + AluSx SINE Alu 1 294 -18 1013 205 17 64 chr11 50759567 50759750 -98023722 - MER58A DNA MER1_type -2196 224 51 1748 149 0 27 chr11 50759750 50760075 -98023397 + AluJb SINE Alu 1 317 0 1013 205 17 64 chr11 50760075 50760123 -98023349 - MER58A DNA MER1_type -2369 51 2 313 304 19 62 chr11 50760241 50760262 -98023210 + MIR SINE MIR 40 60 -202 1994 116 3 0 chr11 50760262 50760547 -98022925 + AluJb SINE Alu 11 296 -16 313 304 19 62 chr11 50760547 50760686 -98022786 + MIR SINE MIR 60 193 -69 187 223 214 58 chr11 50760755 50760858 -98022614 + L2 LINE L2 3153 3271 -1 2221 93 0 13 chr11 50761354 50761656 -98021816 + AluSx SINE Alu 1 298 -14 228 337 10 20 chr11 50761770 50761871 -98021601 + MIR SINE MIR 11 110 -152 2166 70 27 3 chr11 50762210 50762509 -98020963 - AluY SINE Alu -5 306 1 1746 129 45 28 chr11 50762513 50762799 -98020673 - AluSx SINE Alu -7 305 15 462 280 180 22 chr11 50762815 50763126 -98020346 - L1 LINE L1 -2742 3404 3045 1823 121 14 21 chr11 50763227 50763517 -98019955 - AluSx SINE Alu -24 288 1 2443 49 0 10 chr11 50763802 50764110 -98019362 + AluY SINE Alu 2 306 -5 334 328 100 17 chr11 50764306 50764547 -98018925 + MLT1K LTR MaLR 170 430 -158 1965 121 0 7 chr11 50764677 50764966 -98018506 + AluSx SINE Alu 1 287 -25 429 20 0 0 chr11 50764988 50765038 -98018434 + (TG)n Simple_repeat Simple_repeat 1 50 0 854 140 0 37 chr11 50765398 50765534 -98017938 - FLAM_C SINE Alu -2 131 1 1848 79 0 20 chr11 50765637 50765914 -98017558 + AluSx SINE Alu 40 312 0 337 256 46 7 chr11 50766115 50766236 -98017236 + MIR SINE MIR 52 149 -59 205 208 56 0 chr11 50766277 50766349 -98017123 + (TAAA)n Simple_repeat Simple_repeat 3 78 0 1602 179 35 0 chr11 50766496 50766786 -98016686 + AluJb SINE Alu 1 300 -12 685 198 68 57 chr11 50767196 50767373 -98016099 - MIR SINE MIR -59 203 25 2069 114 0 0 chr11 50767375 50767698 -98015774 - AluSx SINE Alu 0 323 1 1583 258 88 7 chr11 50768440 50768897 -98014575 + LTR33 LTR ERVL 28 521 0 207 147 0 0 chr11 50768897 50768931 -98014541 - MIR SINE MIR -90 118 85 478 208 135 19 chr11 50769321 50769478 -98013994 - MIR SINE MIR -62 146 3 2286 58 4 0 chr11 50769882 50770160 -98013312 + AluSx SINE Alu 13 291 -21 249 342 60 19 chr11 50770187 50770364 -98013108 + MIR3 SINE MIR 19 208 0 1757 164 0 7 chr11 50770461 50770759 -98012713 - AluSx SINE Alu -16 296 1 415 272 0 0 chr11 50770974 50771055 -98012417 - MLT1K LTR MaLR -391 197 117 306 230 230 32 chr11 50771324 50771450 -98012022 + MIR3 SINE MIR 33 183 -25 2113 114 10 0 chr11 50771636 50771942 -98011530 - AluSx SINE Alu -3 309 1 421 280 113 7 chr11 50771942 50772092 -98011380 + MIR SINE MIR 47 212 -50 486 288 76 87 chr11 50772524 50772567 -98010905 + L2 LINE L2 2307 2349 -965 1486 190 0 0 chr11 50772567 50772825 -98010647 + AluJo SINE Alu 38 295 -17 486 288 76 87 chr11 50772825 50772996 -98010476 + L2 LINE L2 2349 2518 -796 2324 65 7 0 chr11 50772996 50773302 -98010170 + AluY SINE Alu 1 308 -3 486 288 76 87 chr11 50773302 50773430 -98010042 + L2 LINE L2 2518 2646 -668 400 261 55 102 chr11 50773703 50773896 -98009576 + L2 LINE L2 2703 2903 -410 2165 89 0 7 chr11 50773896 50774189 -98009283 - AluSg SINE Alu -19 291 1 400 261 55 102 chr11 50774189 50774502 -98008970 + L2 LINE L2 2903 3193 -120 798 128 0 78 chr11 50774541 50774682 -98008790 + FLAM_C SINE Alu 2 131 -12 21 0 0 0 chr11 50774794 50774815 -98008657 + GC_rich Low_complexity Low_complexity 1 21 0 263 236 0 22 chr11 50774863 50774952 -98008520 - L1PB1 LINE L1 -117 6034 5948 2155 89 3 10 chr11 50775050 50775352 -98008120 - AluY SINE Alu -11 300 1 2051 123 10 3 chr11 50775555 50775863 -98007609 + AluSx SINE Alu 3 312 0 359 297 23 0 chr11 50776106 50776234 -98007238 - Charlie8 DNA MER1_type -1927 490 360 226 312 80 8 chr11 50776342 50776467 -98007005 - Charlie8 DNA MER1_type -2224 193 60 2310 95 0 0 chr11 50776550 50776856 -98006616 + AluSq SINE Alu 2 307 -6 317 254 15 0 chr11 50776859 50776926 -98006546 - Charlie8 DNA MER1_type -2349 68 1 224 333 49 10 chr11 50777506 50777608 -98005864 + MIR SINE MIR 73 178 -84 265 216 27 40 chr11 50778313 50778387 -98005085 - MLT1J LTR MaLR -48 463 391 764 234 66 117 chr11 50778554 50778767 -98004705 - MLT1J LTR MaLR -71 440 260 1694 98 0 4 chr11 50778767 50779033 -98004439 + AluSx SINE Alu 51 315 0 764 234 66 117 chr11 50779033 50779271 -98004201 - MLT1J LTR MaLR -251 260 11 23 0 0 0 chr11 50779425 50779448 -98004024 + AT_rich Low_complexity Low_complexity 1 23 0 302 270 139 8 chr11 50779525 50779706 -98003766 + MIR SINE MIR 10 211 -51 194 321 48 12 chr11 50780260 50780344 -98003128 + MIR SINE MIR 164 250 -12 2202 95 3 19 chr11 50780729 50781044 -98002428 + AluSp SINE Alu 1 310 -3 454 268 90 61 chr11 50781059 50781193 -98002279 - L2 LINE L2 -19 3294 3165 942 128 0 15 chr11 50781193 50781326 -98002146 + FLAM_C SINE Alu 1 131 -2 454 268 90 61 chr11 50781326 50781546 -98001926 - L2 LINE L2 -148 3165 2849 352 282 161 7 chr11 50781557 50781706 -98001766 - L2 LINE L2 -962 2352 2181 221 224 40 40 chr11 50781859 50781935 -98001537 - L2 LINE L2 -2597 717 642 884 241 96 0 chr11 50782820 50783040 -98000432 - MIR SINE MIR -14 248 8 512 288 121 5 chr11 50783109 50783307 -98000165 - MIR SINE MIR -22 240 20 339 130 0 0 chr11 50783764 50783818 -97999654 + (T)n Simple_repeat Simple_repeat 1 54 0 22 0 0 0 chr11 50784764 50784786 -97998686 + AT_rich Low_complexity Low_complexity 1 22 0 225 280 11 32 chr11 50785614 50785707 -97997765 - MER103 DNA DNA -54 112 22 2262 93 0 3 chr11 50785782 50786083 -97997389 + AluSq SINE Alu 1 300 -13 331 331 92 66 chr11 50786155 50786502 -97996970 + L2 LINE L2 2914 3269 -3 240 35 0 0 chr11 50786842 50786883 -97996589 + (CA)n Simple_repeat Simple_repeat 1 70 0 240 35 0 0 chr11 50786883 50786912 -97996560 + (CA)n Simple_repeat Simple_repeat 2 30 0 1026 170 22 0 chr11 50786920 50787076 -97996396 - AluJo SINE Alu -22 290 128 1978 120 10 0 chr11 50787076 50787368 -97996104 - AluSx SINE Alu -17 295 1 1026 170 22 0 chr11 50787368 50787393 -97996079 - AluJo SINE Alu -184 128 105 1582 158 0 25 chr11 50787685 50787963 -97995509 - AluJb SINE Alu -39 273 3 835 143 0 8 chr11 50788063 50788189 -97995283 + FRAM SINE Alu 1 125 -51 258 32 0 0 chr11 50788190 50788221 -97995251 + (GA)n Simple_repeat Simple_repeat 2 32 0 288 53 0 0 chr11 50788234 50788272 -97995200 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 2097 127 10 0 chr11 50788335 50788643 -97994829 + AluSx SINE Alu 2 312 0 637 242 134 0 chr11 50788734 50788891 -97994581 - MER45A DNA AcHobo 0 178 1 2090 116 13 0 chr11 50789069 50789370 -97994102 - AluSx SINE Alu -7 305 1 24 0 0 0 chr11 50789815 50789839 -97993633 + AT_rich Low_complexity Low_complexity 1 24 0 2121 100 0 3 chr11 50789848 50790138 -97993334 + AluSc SINE Alu 1 289 -20 1409 84 21 105 chr11 50790238 50790311 -97993161 - L1MA5A LINE L1 -2 6295 6217 1491 135 8 16 chr11 50790311 50790555 -97992917 + AluJb SINE Alu 1 242 -70 1409 84 21 105 chr11 50790555 50790575 -97992897 - L1MA5A LINE L1 -80 6217 6197 1753 143 0 0 chr11 50790575 50790871 -97992601 + AluSx SINE Alu 21 312 0 1409 84 21 105 chr11 50790871 50791062 -97992410 - L1MA5A LINE L1 -100 6197 6034 380 299 117 29 chr11 50792345 50792653 -97990819 + L2 LINE L2 2831 3165 -148 536 256 62 82 chr11 50792889 50793244 -97990228 - L1ME2 LINE L1 -217 5947 5600 652 183 216 0 chr11 50793298 50793451 -97990021 - MER5A DNA MER1_type -3 186 1 207 200 0 22 chr11 50793824 50793869 -97989603 + GA-rich Low_complexity Low_complexity 4 47 0 2337 84 13 0 chr11 50795069 50795378 -97988094 - AluSp SINE Alu 0 313 1 2238 130 3 0 chr11 50795712 50796013 -97987459 + AluSx SINE Alu 1 302 -10 262 261 14 0 chr11 50796027 50796096 -97987376 - MLT1K LTR MaLR -1 587 518 1128 191 11 14 chr11 50796220 50796646 -97986826 + L1MB3 LINE L1 5622 6142 -41 965 150 0 0 chr11 50796646 50796786 -97986686 + FLAM_C SINE Alu 1 140 -3 283 321 183 0 chr11 50796950 50797081 -97986391 + MIR SINE MIR 1 155 -107 1228 156 50 32 chr11 50797219 50797502 -97985970 + AluY SINE Alu 1 288 -13 942 53 18 0 chr11 50797883 50797997 -97985475 - AluY SINE Alu -195 116 1 1004 98 0 33 chr11 50798005 50798158 -97985314 - AluSg/x SINE Alu -1 311 164 1114 111 0 0 chr11 50798342 50798486 -97984986 + AluSg SINE Alu 1 144 -166 880 106 0 32 chr11 50798498 50798621 -97984851 - AluSp SINE Alu -194 119 1 2038 103 19 29 chr11 50798630 50798941 -97984531 - AluSp SINE Alu -5 308 1 449 212 9 26 chr11 50798942 50799055 -97984417 - FRAM SINE Alu -8 168 58 802 232 0 20 chr11 50799527 50799725 -97983747 - AluSx SINE Alu -118 194 1 1990 149 7 3 chr11 50799725 50800021 -97983451 - AluJb SINE Alu -15 297 1 850 208 0 7 chr11 50800027 50800181 -97983291 - FAM SINE Alu -15 170 18 2053 117 31 7 chr11 50800259 50800550 -97982922 + AluSx SINE Alu 1 298 -14 292 183 14 35 chr11 50800627 50800760 -97982712 - Alu SINE Alu -1 301 251 23 0 0 0 chr11 50800829 50800852 -97982620 + GC_rich Low_complexity Low_complexity 1 23 0 357 131 0 16 chr11 50800952 50801013 -97982459 - AluS SINE Alu -248 60 1 2156 82 24 10 chr11 50801025 50801318 -97982154 - AluY SINE Alu -12 299 3 281 281 85 65 chr11 50801340 50801359 -97982113 - MIR3 SINE MIR -36 172 155 1530 243 38 15 chr11 50801359 50801758 -97981714 + MLT1I LTR MaLR 1 408 -1 281 281 85 65 chr11 50801758 50801891 -97981581 - MIR3 SINE MIR -53 155 17 768 68 19 10 chr11 50801978 50802081 -97981391 + AluSp SINE Alu 2 105 -208 712 101 0 0 chr11 50802181 50802270 -97981202 - AluSg SINE Alu -207 103 15 385 324 43 86 chr11 50802587 50802797 -97980675 - L2 LINE L2 -52 3220 3020 2411 91 7 0 chr11 50802888 50803196 -97980276 - AluY SINE Alu -1 310 1 195 348 45 22 chr11 50803260 50803349 -97980123 - L2 LINE L2 -22 3250 3160 2385 88 7 0 chr11 50803744 50804041 -97979431 - AluSp SINE Alu -14 299 1 2307 101 6 19 chr11 50804218 50804534 -97978938 - AluSx SINE Alu 0 312 1 1509 177 78 0 chr11 50804536 50804818 -97978654 - AluJb SINE Alu -8 304 1 315 279 43 56 chr11 50805042 50805203 -97978269 + L2 LINE L2 2882 3040 -232 210 296 28 0 chr11 50805263 50805334 -97978138 + MIR SINE MIR 90 162 -100 32 91 0 0 chr11 50806031 50806119 -97977353 + GC_rich Low_complexity Low_complexity 1 88 0 21 0 0 0 chr11 50806350 50806371 -97977101 + GC_rich Low_complexity Low_complexity 1 21 0 213 39 0 0 chr11 50806599 50806625 -97976847 + (CTG)n Simple_repeat Simple_repeat 3 28 0 197 146 73 0 chr11 50807425 50807466 -97976006 - MIR SINE MIR -115 147 104 195 210 179 34 chr11 50807872 50808016 -97975456 + MIR SINE MIR 17 182 -63 25 51 0 0 chr11 50808251 50808290 -97975182 + AT_rich Low_complexity Low_complexity 1 39 0 43 0 0 0 chr11 50808298 50808341 -97975131 + AT_rich Low_complexity Low_complexity 1 43 0 377 317 49 24 chr11 50808626 50808790 -97974682 - MIR3 SINE MIR -3 205 38 301 258 16 55 chr11 50810090 50810175 -97973297 - MIR SINE MIR -28 234 147 2279 128 0 0 chr11 50810175 50810487 -97972985 - AluSx SINE Alu 0 312 1 2234 113 0 0 chr11 50810487 50810779 -97972693 - AluSc SINE Alu -17 292 1 1772 184 10 3 chr11 50810781 50811074 -97972398 - AluJo SINE Alu -17 295 1 301 258 16 55 chr11 50811074 50811112 -97972360 - MIR SINE MIR -115 147 112 2253 99 0 0 chr11 50811300 50811629 -97971843 - AluSx SINE Alu 0 329 1 525 213 46 0 chr11 50811635 50811743 -97971729 - FLAM_A SINE Alu -20 122 10 511 237 95 8 chr11 50811874 50812039 -97971433 + MIR SINE MIR 19 195 -63 2152 119 7 0 chr11 50812149 50812443 -97971029 - AluSx SINE Alu -16 296 1 1789 171 27 3 chr11 50812562 50812861 -97970611 + AluJb SINE Alu 1 306 -6 236 264 72 32 chr11 50812946 50813071 -97970401 - MER113 DNA MER1_type? -388 133 4 808 168 5 73 chr11 50813950 50814141 -97969331 - AluJb SINE Alu 0 312 135 605 301 47 45 chr11 50814145 50814506 -97968966 - L1MC/D LINE L1 -2006 5802 5443 2679 39 13 0 chr11 50814506 50814812 -97968660 - AluY SINE Alu -1 310 1 605 301 47 45 chr11 50814812 50814883 -97968589 - L1MC/D LINE L1 -2365 5443 5366 2332 99 0 34 chr11 50814883 50815207 -97968265 - AluSq SINE Alu 0 313 1 605 301 47 45 chr11 50815207 50815241 -97968231 - L1MC/D LINE L1 -2442 5366 5334 608 269 10 30 chr11 50815432 50815629 -97967843 + MIR SINE MIR 14 206 -56 457 129 0 0 chr11 50815726 50815796 -97967676 + AluS SINE Alu 232 301 -9 350 352 21 0 chr11 50815812 50815954 -97967518 + L1MC4a LINE L1 5816 5960 -1848 1807 130 42 0 chr11 50816054 50816315 -97967157 - AluSx SINE Alu -14 298 27 2265 88 24 3 chr11 50816315 50816607 -97966865 - AluY SINE Alu -10 301 2 318 50 0 0 chr11 50816609 50816649 -97966823 - AluSx SINE Alu -261 40 1 645 262 140 9 chr11 50817327 50817548 -97965924 + MIR SINE MIR 13 262 0 261 277 116 27 chr11 50817629 50817741 -97965731 - MIR SINE MIR -50 212 91 2295 98 0 3 chr11 50817803 50818098 -97965374 - AluSg SINE Alu -12 298 5 256 199 95 147 chr11 50818340 50818571 -97964901 - MER112 DNA MER1_type -41 219 1 2126 140 3 0 chr11 50818915 50819222 -97964250 - AluSx SINE Alu -4 308 1 1640 128 3 109 chr11 50819460 50819789 -97963683 - AluSg1 SINE Alu -15 294 1 272 186 69 29 chr11 50819808 50819910 -97963562 - L1ME4a LINE L1 -49 6072 5967 1146 93 37 0 chr11 50820090 50820252 -97963220 - AluSc SINE Alu -10 299 132 1784 166 14 7 chr11 50820433 50820723 -97962749 - AluJo SINE Alu 0 312 21 351 251 68 84 chr11 50820738 50820929 -97962543 + L2 LINE L2 3117 3304 -9 768 239 119 18 chr11 50821075 50821360 -97962112 + L1MC4a LINE L1 5688 6001 -1807 2186 89 7 3 chr11 50821367 50821680 -97961792 + AluSg SINE Alu 1 314 0 778 164 0 0 chr11 50821694 50821810 -97961662 + FLAM_C SINE Alu 9 124 -19 694 137 32 0 chr11 50822003 50822127 -97961345 + MER20 DNA MER1_type 88 215 -4 349 327 55 24 chr11 50822228 50822393 -97961079 + MIR SINE MIR 44 213 -49 2303 113 0 0 chr11 50822401 50822710 -97960762 - AluSx SINE Alu -3 309 1 294 73 0 0 chr11 50823625 50823666 -97959806 + (TA)n Simple_repeat Simple_repeat 2 42 0 279 250 250 0 chr11 50823681 50823813 -97959659 + MIR SINE MIR 8 172 -90 332 328 88 0 chr11 50823962 50824087 -97959385 + L2 LINE L2 3137 3272 0 214 329 132 0 chr11 50824113 50824189 -97959283 + MIR SINE MIR 111 196 -66 1783 162 0 26 chr11 50824192 50824494 -97958978 + AluJb SINE Alu 1 294 -18 379 211 22 22 chr11 50825282 50825372 -97958100 + MIR SINE MIR 80 169 -93 1708 157 73 3 chr11 50825372 50825659 -97957813 - AluJb SINE Alu -5 307 1 2343 60 11 0 chr11 50825705 50825990 -97957482 + AluYa5 SINE Alu 14 301 -10 2247 118 0 0 chr11 50826505 50826826 -97956646 + AluSx SINE Alu 3 312 0 306 259 153 0 chr11 50826848 50826933 -97956539 + L2 LINE L2 3203 3300 -13 180 0 0 0 chr11 50826933 50826953 -97956519 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 243 0 0 0 chr11 50827376 50827403 -97956069 + (TG)n Simple_repeat Simple_repeat 2 28 0 1496 105 0 74 chr11 50828050 50828304 -97955168 - AluSg/x SINE Alu 0 307 71 358 327 79 12 chr11 50828741 50828906 -97954566 - MIR SINE MIR -16 246 71 225 217 17 33 chr11 50828910 50828970 -97954502 - tRNA-Gln-CAG tRNA tRNA -11 64 6 999 163 43 22 chr11 50829051 50829235 -97954237 + AluJo SINE Alu 119 306 -6 2177 99 0 0 chr11 50829620 50829951 -97953521 - AluSx SINE Alu 0 331 1 195 358 16 24 chr11 50831259 50831339 -97952133 - L2 LINE L2 -7 3265 3185 2217 127 37 8 chr11 50831339 50831693 -97951779 + THE1B LTR MaLR 1 364 0 195 358 16 24 chr11 50831693 50831735 -97951737 - L2 LINE L2 -87 3185 3144 446 297 17 11 chr11 50831814 50831989 -97951483 + MIR SINE MIR 56 231 -31 2247 117 0 13 chr11 50832349 50832658 -97950814 + AluSx SINE Alu 1 305 -7 2047 96 14 38 chr11 50832784 50833105 -97950367 + AluSx SINE Alu 1 314 0 1288 99 0 0 chr11 50833107 50833269 -97950203 + AluSg/x SINE Alu 135 296 -16 252 151 123 14 chr11 50833273 50833346 -97950126 - L1ME LINE L1 -252 5869 5789 2158 143 3 3 chr11 50833554 50833862 -97949610 + AluSx SINE Alu 1 308 -4 326 313 99 23 chr11 50833995 50834128 -97949344 - MIR SINE MIR -63 145 20 485 211 0 0 chr11 50834148 50834243 -97949229 + MER5A DNA MER1_type 15 109 -80 202 294 39 0 chr11 50834616 50834667 -97948805 + MIR SINE MIR 51 103 -105 188 358 0 45 chr11 50834945 50835012 -97948460 + L3 LINE CR1 1513 1576 -1 976 118 0 6 chr11 50835127 50835296 -97948176 + L1MA7 LINE L1 6124 6291 0 2131 113 4 0 chr11 50835302 50835576 -97947896 + AluSx SINE Alu 1 275 -37 212 0 36 0 chr11 50835584 50835612 -97947860 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 186 43 0 0 chr11 50835611 50835634 -97947838 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 312 302 131 37 chr11 50835641 50835886 -97947586 - L2 LINE L2 -201 3071 2804 2121 94 0 50 chr11 50836661 50836959 -97946513 + AluSq SINE Alu 7 289 -24 23 0 0 0 chr11 50836960 50836983 -97946489 + AT_rich Low_complexity Low_complexity 1 23 0 1946 106 0 28 chr11 50837260 50837542 -97945930 - AluSx SINE Alu -1 311 38 2107 93 61 0 chr11 50837589 50837868 -97945604 - AluSp SINE Alu -17 296 1 618 279 22 33 chr11 50837870 50838053 -97945419 + MIR SINE MIR 77 257 -5 1959 160 127 24 chr11 50838122 50838216 -97945256 + L1MCa LINE L1 20 103 -6323 9878 66 14 79 chr11 50838216 50839690 -97943782 + SVA Other Other 9 1386 0 1959 160 127 24 chr11 50839690 50839789 -97943683 + L1MCa LINE L1 103 190 -6236 2386 109 0 0 chr11 50839789 50840101 -97943371 + AluSp SINE Alu 1 312 -1 1959 160 127 24 chr11 50840101 50840332 -97943140 + L1MCa LINE L1 190 489 -5937 961 222 0 0 chr11 50840332 50840512 -97942960 - FRAM SINE Alu -1 175 1 1909 122 90 10 chr11 50840525 50840813 -97942659 - AluSx SINE Alu -1 311 1 3157 148 31 93 chr11 50840816 50841293 -97942179 + L1MCa LINE L1 484 989 -5437 2406 96 0 6 chr11 50841293 50841606 -97941866 + AluSx SINE Alu 1 311 -1 3157 148 31 93 chr11 50841606 50841749 -97941723 + L1MCa LINE L1 989 1139 -5287 638 192 92 0 chr11 50841749 50841869 -97941603 + FLAM_C SINE Alu 3 133 0 3157 148 31 93 chr11 50841869 50841984 -97941488 + L1MCa LINE L1 1139 1175 -5251 1990 129 11 4 chr11 50841984 50842263 -97941209 + AluSq SINE Alu 1 281 -32 3157 148 31 93 chr11 50842263 50842276 -97941196 + L1MCa LINE L1 1175 1187 -5239 309 118 0 0 chr11 50842276 50842327 -97941145 + (GGGA)n Simple_repeat Simple_repeat 4 54 0 1478 107 13 27 chr11 50842362 50842586 -97940886 - AluY SINE Alu -6 305 85 261 241 100 112 chr11 50842775 50842945 -97940527 - MIR SINE MIR -69 193 26 336 102 0 0 chr11 50842978 50843027 -97940445 + (TG)n Simple_repeat Simple_repeat 1 49 0 2123 127 3 0 chr11 50843299 50843598 -97939874 - AluSq SINE Alu -13 300 1 2198 118 34 0 chr11 50844109 50844406 -97939066 - AluSq SINE Alu -2 311 5 253 296 98 30 chr11 50844642 50844774 -97938698 + L2 LINE L2 3171 3311 -2 1828 171 40 0 chr11 50845123 50845421 -97938051 - AluJo SINE Alu -2 310 1 309 68 0 0 chr11 50846251 50846295 -97937177 + (TG)n Simple_repeat Simple_repeat 1 44 0 252 100 0 0 chr11 50846295 50846335 -97937137 + (GA)n Simple_repeat Simple_repeat 2 41 0 880 146 20 33 chr11 50846718 50846869 -97936603 - FRAM SINE Alu -8 168 20 181 222 0 0 chr11 50847296 50847332 -97936140 - L2 LINE L2 -20 3252 3217 305 279 58 0 chr11 50848322 50848408 -97935064 + L2 LINE L2 3181 3271 -1 226 288 131 46 chr11 50848690 50848843 -97934629 - MIR3 SINE MIR -28 180 15 1729 174 18 0 chr11 50849193 50849474 -97933998 - AluSx SINE Alu -26 286 1 486 0 0 0 chr11 50849531 50849585 -97933887 + (TG)n Simple_repeat Simple_repeat 2 55 0 491 230 79 26 chr11 50849635 50849787 -97933685 + MIR SINE MIR 20 179 -83 * 826 281 35 22 chr11 50849763 50849994 -97933478 - MIR SINE MIR 0 262 29 2317 107 0 0 chr11 50850328 50850628 -97932844 - AluSx SINE Alu -12 300 1 21 0 0 0 chr11 50851064 50851085 -97932387 + AT_rich Low_complexity Low_complexity 1 21 0 436 325 103 29 chr11 50851311 50851662 -97931810 - L1ME4a LINE L1 -266 5855 5479 22 35 0 0 chr11 50851662 50851691 -97931781 + AT_rich Low_complexity Low_complexity 1 29 0 2137 127 7 0 chr11 50851694 50851985 -97931487 - AluSq SINE Alu -20 293 1 23 33 0 0 chr11 50852102 50852132 -97931340 + AT_rich Low_complexity Low_complexity 1 30 0 196 256 131 144 chr11 50852411 50852571 -97930901 + MIR SINE MIR 30 187 -75 2561 193 8 32 chr11 50853058 50853129 -97930343 - L1MB7 LINE L1 -5 6179 6108 2280 115 0 0 chr11 50853129 50853424 -97930048 + AluSx SINE Alu 1 295 -17 2561 193 8 32 chr11 50853424 50853887 -97929585 - L1MB7 LINE L1 -76 6108 5658 376 215 151 0 chr11 50854019 50854112 -97929360 - MIR SINE MIR -90 172 66 277 287 116 16 chr11 50854297 50854426 -97929046 + MIR3 SINE MIR 5 146 -62 216 235 0 0 chr11 50854461 50854529 -97928943 + GA-rich Low_complexity Low_complexity 1 68 0 2438 70 0 25 chr11 50855279 50855595 -97927877 - AluY SINE Alu -3 308 1 1859 138 71 0 chr11 50855600 50855883 -97927589 - AluSx SINE Alu -9 303 1 645 208 88 6 chr11 50856008 50856167 -97927305 - MIR3 SINE MIR -22 186 15 2292 71 7 0 chr11 50856442 50856742 -97926730 - AluSg1 SINE Alu 0 302 1 2334 115 0 0 chr11 50856744 50857049 -97926423 - AluSq SINE Alu -8 305 1 362 323 192 0 chr11 50857327 50857494 -97925978 + L1ME4a LINE L1 5730 5928 -193 2136 134 0 0 chr11 50857498 50857790 -97925682 + AluSx SINE Alu 1 292 -20 618 235 95 11 chr11 50857848 50858027 -97925445 + MIR SINE MIR 2 195 -67 182 341 24 47 chr11 50858179 50858264 -97925208 + L2 LINE L2 2865 2947 -325 194 176 118 39 chr11 50858337 50858355 -97925117 + L2 LINE L2 3214 3229 -43 1989 111 14 0 chr11 50858355 50858658 -97924814 - AluSx SINE Alu 0 307 1 194 176 118 39 chr11 50858658 50858689 -97924783 + L2 LINE L2 3229 3268 -4 2169 119 10 3 chr11 50858714 50859017 -97924455 - AluSx SINE Alu -7 305 1 225 0 0 0 chr11 50859017 50859042 -97924430 + (TTA)n Simple_repeat Simple_repeat 2 26 0 550 243 0 0 chr11 50859042 50859145 -97924327 - FLAM_A SINE Alu -24 118 16 255 275 22 44 chr11 50859504 50859595 -97923877 + MIR SINE MIR 19 107 -155 1733 166 16 39 chr11 50859838 50860145 -97923327 - AluJb SINE Alu -12 300 1 324 358 50 0 chr11 50860570 50860690 -97922782 - L2 LINE L2 -5 3267 3142 392 111 0 28 chr11 50860938 50861005 -97922467 - L1MB8 LINE L1 -5 6173 6108 2186 127 7 0 chr11 50861005 50861305 -97922167 + AluSx SINE Alu 1 302 -10 331 283 85 0 chr11 50862433 50862539 -97920933 + MER103 DNA DNA 8 122 -44 609 269 8 0 chr11 50862645 50862779 -97920693 - L2 LINE L2 0 3313 3179 369 269 96 39 chr11 50862778 50862875 -97920597 - MIR SINE MIR -6 256 166 * 207 0 0 0 chr11 50862875 50862898 -97920574 + (TTTTA)n Simple_repeat Simple_repeat 5 27 0 2064 91 3 21 chr11 50862898 50863184 -97920288 - AluSq SINE Alu -32 281 1 369 269 96 39 chr11 50863184 50863241 -97920231 - MIR SINE MIR -95 167 92 1968 110 92 11 chr11 50863773 50864055 -97919417 + AluSx SINE Alu 1 305 -7 1532 136 48 0 chr11 50864559 50864809 -97918663 - L1MC1 LINE L1 -2 6331 6070 2093 123 7 0 chr11 50865399 50865692 -97917780 - AluSx SINE Alu 0 312 18 309 289 10 10 chr11 50865897 50865994 -97917478 - MIR SINE MIR 0 262 166 231 258 32 0 chr11 50866025 50866087 -97917385 + MIR SINE MIR 91 154 -108 449 255 104 65 chr11 50866102 50866333 -97917139 + MIR SINE MIR 22 261 -1 189 246 108 0 chr11 50866376 50866441 -97917031 + L2 LINE L2 3199 3270 -43 258 255 75 0 chr11 50867268 50867374 -97916098 - Charlie8 DNA MER1_type -2161 256 143 42 0 0 0 chr11 50867396 50867438 -97916034 + AT_rich Low_complexity Low_complexity 1 42 0 195 105 53 0 chr11 50867538 50867595 -97915877 + (TA)n Simple_repeat Simple_repeat 2 61 0 319 253 21 53 chr11 50867599 50867694 -97915778 + L1MC4 LINE L1 6612 6703 -1339 313 250 30 85 chr11 50867601 50867765 -97915707 - L1MCa LINE L1 -4361 2065 1911 * 206 85 68 0 chr11 50867788 50867847 -97915625 + (TA)n Simple_repeat Simple_repeat 1 63 0 2156 119 0 0 chr11 50867847 50868132 -97915340 - AluSg SINE Alu -25 285 1 306 214 114 46 chr11 50868134 50868185 -97915287 - Charlie8 DNA MER1_type -200 141 95 2356 98 0 3 chr11 50868185 50868490 -97914982 - AluSq SINE Alu -9 304 1 306 214 114 46 chr11 50868490 50868569 -97914903 - Charlie8 DNA MER1_type -246 95 2 279 211 39 0 chr11 50868747 50868799 -97914673 - MIR SINE MIR -62 146 93 301 256 68 152 chr11 50868954 50869159 -97914313 + MIR SINE MIR 22 204 -58 1998 173 0 3 chr11 50869159 50869465 -97914007 + AluJb SINE Alu 1 305 -7 301 256 68 152 chr11 50869465 50869509 -97913963 + MIR SINE MIR 204 250 -12 508 255 118 34 chr11 50870539 50870743 -97912729 + MIR SINE MIR 41 261 -1 824 242 9 50 chr11 50870798 50870927 -97912545 - MIR SINE MIR -14 248 129 2097 113 3 7 chr11 50870927 50871231 -97912241 + AluSq SINE Alu 1 303 0 824 242 9 50 chr11 50871231 50871319 -97912153 - MIR SINE MIR -133 129 39 302 246 95 24 chr11 50871287 50871413 -97912059 + MIR SINE MIR 20 154 -108 * 266 283 25 101 chr11 50872093 50872169 -97911303 + L2 LINE L2 2392 2451 -863 2168 113 17 0 chr11 50872169 50872460 -97911012 - AluSx SINE Alu -12 300 5 266 283 25 101 chr11 50872460 50872542 -97910930 + L2 LINE L2 2451 2538 -776 489 248 8 8 chr11 50872553 50872674 -97910798 - MIR3 SINE MIR -3 205 85 1881 166 0 25 chr11 50872848 50873168 -97910304 + AluJb SINE Alu 1 312 0 2342 98 0 3 chr11 50873456 50873752 -97909720 - AluSq SINE Alu -18 295 1 1160 110 60 70 chr11 50873768 50873968 -97909504 - AluSc SINE Alu 0 309 112 1498 127 0 18 chr11 50874076 50874297 -97909175 - AluSx SINE Alu -95 217 1 1562 147 66 33 chr11 50874325 50874598 -97908874 - AluJo SINE Alu -30 282 1 1638 238 132 37 chr11 50874598 50875196 -97908276 + L2 LINE L2 2454 3156 -157 2394 83 3 16 chr11 50875196 50875508 -97907964 - AluSx SINE Alu -4 308 1 1638 238 132 37 chr11 50875508 50875659 -97907813 + L2 LINE L2 3156 3291 -22 207 291 76 0 chr11 50875686 50875765 -97907707 - L2 LINE L2 -50 3263 3179 579 223 218 31 chr11 50875787 50875980 -97907492 - MIR SINE MIR -25 237 9 1999 113 88 0 chr11 50877078 50877362 -97906110 - AluSq SINE Alu -4 309 1 2266 107 3 0 chr11 50927597 50927895 -97855577 - AluSx SINE Alu -13 299 1 2383 67 20 7 chr11 50927942 50928241 -97855231 - AluY SINE Alu -8 303 1 2192 103 7 7 chr11 50928715 50929017 -97854455 + AluSx SINE Alu 1 302 -10 316 143 20 0 chr11 50929771 50929820 -97853652 - MSTB2 LTR MaLR 0 457 408 1042 97 0 0 chr11 50929820 50929964 -97853508 - AluY SINE Alu -18 293 150 2282 101 0 13 chr11 50930494 50930800 -97852672 - AluSq SINE Alu -11 302 1 221 233 33 0 chr11 50931517 50931577 -97851895 + MIR SINE MIR 90 151 -111 311 212 12 0 chr11 50933085 50933170 -97850302 + CT-rich Low_complexity Low_complexity 2 87 0 381 335 72 53 chr11 50934142 50934461 -97849011 + L2 LINE L2 2942 3266 -6 2044 141 26 0 chr11 50934705 50935009 -97848463 + AluSx SINE Alu 1 312 0 210 226 131 24 chr11 50935015 50935099 -97848373 + MIR SINE MIR 169 261 -1 195 283 0 0 chr11 50935302 50935348 -97848124 + L2 LINE L2 3265 3310 -3 603 163 46 128 chr11 50936125 50936321 -97847151 + MER3 DNA MER1_type 29 208 -1 433 274 60 83 chr11 50936321 50936492 -97846980 - MLT1J LTR MaLR -228 283 118 2046 151 3 0 chr11 50936492 50936797 -97846675 - AluSx SINE Alu -6 306 1 433 274 60 83 chr11 50936797 50936876 -97846596 - MLT1J LTR MaLR -393 118 39 317 333 72 0 chr11 50937032 50937143 -97846329 - L2 LINE L2 -4 3309 3191 848 172 48 67 chr11 50937181 50937390 -97846082 + MER3 DNA MER1_type 1 205 -4 2123 277 72 7 chr11 50937723 50938435 -97845037 + L2 LINE L2 1953 2710 -604 182 238 100 25 chr11 50938427 50938507 -97844965 + L2 LINE L2 3038 3123 -190 * 1099 117 11 22 chr11 50938615 50938794 -97844678 - AluSq SINE Alu -136 177 1 1238 186 51 83 chr11 50939065 50939415 -97844057 + MER58B DNA MER1_type 1 339 -2 1540 79 65 0 chr11 50939491 50939707 -97843765 + MER30 DNA MER1_type 1 230 0 213 65 0 0 chr11 50939851 50939882 -97843590 + (TG)n Simple_repeat Simple_repeat 1 31 0 283 331 92 23 chr11 50940550 50940680 -97842792 - MIR3 SINE MIR -28 180 42 417 321 76 18 chr11 50940706 50940930 -97842542 - MIR SINE MIR -14 248 12 619 274 17 6 chr11 50941402 50941577 -97841895 - MER5A DNA MER1_type 0 189 13 195 360 36 0 chr11 50942094 50942205 -97841267 + MIR SINE MIR 35 149 -59 359 288 18 0 chr11 50942396 50942507 -97840965 + L2 LINE L2 3188 3300 -13 1116 179 0 60 chr11 50942666 50942901 -97840571 - AluJo SINE Alu -7 305 85 470 252 136 0 chr11 50942901 50943048 -97840424 - AluJo SINE Alu -62 250 84 268 173 0 80 chr11 50943055 50943130 -97840342 - FLAM_A SINE Alu -4 129 61 266 203 58 14 chr11 50943247 50943316 -97840156 + MIR SINE MIR 104 175 -87 2298 88 3 14 chr11 50943579 50943875 -97839597 + AluSq SINE Alu 1 293 -20 804 195 24 34 chr11 50943998 50944203 -97839269 + L2 LINE L2 3111 3313 0 660 152 30 110 chr11 50944250 50944414 -97839058 + Charlie1 DNA MER1_type 5 155 -2606 475 129 11 65 chr11 50944383 50944458 -97839014 + Charlie1 DNA MER1_type 2094 2165 -596 * 2656 113 14 86 chr11 50944458 50944588 -97838884 - MER101 LTR ERV1 0 474 336 1989 96 3 64 chr11 50944588 50944902 -97838570 - AluSx SINE Alu 0 312 18 2656 113 14 86 chr11 50944902 50945282 -97838190 - MER101 LTR ERV1 -138 336 1 475 129 11 65 chr11 50945282 50945299 -97838173 + Charlie1 DNA MER1_type 2165 2181 -580 1742 166 236 32 chr11 50945350 50945762 -97837710 + Charlie1 DNA MER1_type 2159 2692 -69 2232 92 0 64 chr11 50945762 50946089 -97837383 - AluSx SINE Alu -2 310 5 1742 166 236 32 chr11 50946089 50946177 -97837295 + Charlie1 DNA MER1_type 2692 2761 0 21 0 0 0 chr11 50946600 50946621 -97836851 + AT_rich Low_complexity Low_complexity 1 21 0 2265 80 21 0 chr11 50946621 50946907 -97836565 - AluSx SINE Alu -20 292 1 191 255 0 0 chr11 50946931 50946978 -97836494 - MIR SINE MIR -58 150 104 211 231 0 39 chr11 50947373 50947425 -97836047 + MIR SINE MIR 168 217 -45 186 43 0 0 chr11 50947433 50947456 -97836016 + (TAA)n Simple_repeat Simple_repeat 2 24 0 391 220 182 15 chr11 50947961 50948093 -97835379 - MIR3 SINE MIR -5 203 50 185 282 24 106 chr11 50948092 50948177 -97835295 + MIR SINE MIR 6 83 -179 * 1937 148 3 0 chr11 50949672 50949977 -97833495 + AluSx SINE Alu 3 308 -4 201 196 36 54 chr11 50950153 50950209 -97833263 + MIR SINE MIR 196 250 -12 695 303 39 4 chr11 50950237 50950471 -97833001 + MIR SINE MIR 21 262 0 312 380 90 0 chr11 50951624 50951790 -97831682 + MIR SINE MIR 79 259 -3 2064 129 3 0 chr11 50952450 50952760 -97830712 + AluSx SINE Alu 1 311 -1 2163 114 0 0 chr11 50952868 50953166 -97830306 - AluSx SINE Alu -14 298 1 589 147 0 29 chr11 50953166 50953268 -97830204 - L1MA9 LINE L1 -361 5951 5853 455 145 11 4 chr11 50953268 50953366 -97830106 - L1P5 LINE L1 -400 5754 5655 295 255 157 38 chr11 50953348 50953583 -97829889 - L1M4 LINE L1 -2154 3992 3730 * 210 118 0 0 chr11 50954239 50954273 -97829199 + (A)n Simple_repeat Simple_repeat 1 34 0 201 175 0 0 chr11 50955895 50955935 -97827537 + GA-rich Low_complexity Low_complexity 3 42 0 2159 103 0 7 chr11 50956025 50956326 -97827146 - AluSx SINE Alu -13 299 1 278 278 52 43 chr11 50956407 50956522 -97826950 - MIR SINE MIR -75 133 18 219 217 217 57 chr11 50957191 50957348 -97826124 - MER5A DNA MER1_type 0 189 8 648 228 76 0 chr11 50957754 50957912 -97825560 - MER58 DNA MER1_type -171 170 1 2184 113 3 0 chr11 50958183 50958494 -97824978 + AluSx SINE Alu 1 312 0 235 356 33 11 chr11 50958712 50958802 -97824670 - L2 LINE L2 -189 3083 2992 2224 100 6 0 chr11 50959375 50959686 -97823786 + AluSp SINE Alu 1 313 0 200 269 39 39 chr11 50960370 50960448 -97823024 - MIR SINE MIR -85 123 46 1612 154 16 49 chr11 50960808 50961113 -97822359 + AluJo SINE Alu 1 295 -17 1830 106 64 0 chr11 50961116 50961381 -97822091 + AluSg SINE Alu 1 282 -28 207 88 0 0 chr11 50961382 50961416 -97822056 + (CTAA)n Simple_repeat Simple_repeat 3 36 0 233 302 16 0 chr11 50961969 50962032 -97821440 - MIR SINE MIR -136 126 63 1549 111 0 0 chr11 50962346 50962554 -97820918 + AluJb SINE Alu 86 293 -19 21 57 0 0 chr11 50962587 50962622 -97820850 + AT_rich Low_complexity Low_complexity 1 35 0 237 220 17 34 chr11 50963051 50963110 -97820362 - MIR SINE MIR -89 173 116 931 218 98 33 chr11 50964035 50964333 -97819139 + MLT1A1 LTR MaLR 1 388 -40 2113 119 3 0 chr11 50964336 50964639 -97818833 + AluSx SINE Alu 1 304 -8 2125 88 17 7 chr11 50964640 50964935 -97818537 + AluSc SINE Alu 1 298 -11 2113 88 30 7 chr11 50964935 50965240 -97818232 + AluSx SINE Alu 1 312 0 304 216 227 10 chr11 50966448 50966545 -97816927 + L2 LINE L2 3176 3293 -20 260 195 0 0 chr11 50966897 50966938 -97816534 - L2 LINE L2 -19 3253 3213 388 301 58 58 chr11 50966968 50967174 -97816298 + MIR SINE MIR 6 211 -51 298 171 92 40 chr11 50967187 50967263 -97816209 - MIR SINE MIR -71 191 112 1653 175 7 3 chr11 50967342 50967634 -97815838 - AluJo SINE Alu -19 293 1 264 257 86 9 chr11 50967675 50967780 -97815692 - MIR SINE MIR -77 131 19 2288 90 3 3 chr11 50968366 50968678 -97814794 + AluSx SINE Alu 1 312 0 601 235 27 0 chr11 50969368 50969517 -97813955 - LTR33 LTR ERVL -1 520 368 407 203 86 61 chr11 50969546 50969709 -97813763 - LTR33 LTR ERVL -354 167 1 513 294 60 16 chr11 50970404 50970588 -97812884 - MIR SINE MIR -57 205 14 1532 199 17 0 chr11 50971948 50972250 -97811222 - AluJo SINE Alu -1 311 5 248 286 24 48 chr11 50972369 50972453 -97811019 - MIR3 SINE MIR -36 172 91 2012 83 20 46 chr11 50972719 50973021 -97810451 + AluSq SINE Alu 1 294 -19 313 286 111 2 chr11 50974118 50974241 -97809231 + MIR SINE MIR 3 137 -71 2033 103 7 3 chr11 50974530 50974812 -97808660 - AluSq SINE Alu -7 306 24 447 116 35 23 chr11 50974850 50974936 -97808536 + L1MC1 LINE L1 6245 6331 -2 312 245 118 29 chr11 50974943 50975045 -97808427 + MIR SINE MIR 152 262 0 1427 213 75 9 chr11 50975907 50976226 -97807246 - MER58B DNA MER1_type 0 341 2 223 385 155 0 chr11 50976275 50976436 -97807036 + MIR SINE MIR 13 198 -64 2557 39 3 0 chr11 50976617 50976927 -97806545 + AluY SINE Alu 1 311 0 360 271 24 0 chr11 50977350 50977435 -97806037 - MIR3 SINE MIR -29 179 93 2002 112 7 7 chr11 50977598 50977894 -97805578 + AluSx SINE Alu 1 296 -16 2260 92 0 16 chr11 50978685 50979002 -97804470 + AluSq SINE Alu 1 312 -1 398 77 12 73 chr11 50979481 50979558 -97803914 - MLT1B LTR MaLR -328 62 1 988 240 45 28 chr11 50979780 50980068 -97803404 - MLT1J LTR MaLR -218 293 1 426 295 111 63 chr11 50980820 50981091 -97802381 - L1ME4a LINE L1 -53 6068 5785 637 222 185 16 chr11 50981093 50981282 -97802190 + MER58A DNA MER1_type 4 224 0 924 246 24 0 chr11 50981294 50981505 -97801967 + Charlie1 DNA MER1_type 5 220 -2541 589 188 7 49 chr11 50981503 50981647 -97801825 + Charlie1 DNA MER1_type 2623 2760 -1 * 22 35 0 0 chr11 50981700 50981729 -97801743 + AT_rich Low_complexity Low_complexity 1 29 0 2164 99 30 0 chr11 50981847 50982149 -97801323 + AluSx SINE Alu 1 311 -1 4965 215 37 24 chr11 50982209 50984176 -97799296 + L1M3e LINE L1 2017 3966 -3599 3279 187 87 22 chr11 50984281 50984731 -97798741 + L1M3e LINE L1 4479 4898 -2667 1495 179 4 11 chr11 50984731 50985005 -97798467 - AluJo SINE Alu -30 282 11 3279 187 87 22 chr11 50985005 50985373 -97798099 + L1M3e LINE L1 4898 5350 -2215 1276 103 6 0 chr11 50985499 50985674 -97797798 + AluSg/x SINE Alu 133 308 -4 265 270 0 0 chr11 50985685 50985748 -97797724 + MIR SINE MIR 156 218 -44 2075 114 0 16 chr11 50986027 50986333 -97797139 - AluSx SINE Alu -11 301 1 349 342 25 8 chr11 50986613 50986733 -97796739 - MIR3 SINE MIR -73 135 14 287 304 72 40 chr11 50986796 50986921 -97796551 - MIR3 SINE MIR -77 131 3 1839 88 0 48 chr11 50987060 50987332 -97796140 - AluSq SINE Alu -19 294 36 23 0 0 0 chr11 50987600 50987623 -97795849 + AT_rich Low_complexity Low_complexity 1 23 0 202 288 15 0 chr11 50988857 50988923 -97794549 + GA-rich Low_complexity Low_complexity 4 70 0 226 340 39 10 chr11 50989148 50989251 -97794221 - MIR SINE MIR -125 137 32 213 258 15 45 chr11 50989392 50989458 -97794014 - MIR3 SINE MIR -7 201 138 307 283 38 19 chr11 50989533 50989639 -97793833 + MIR SINE MIR 45 152 -56 229 247 52 52 chr11 50990878 50990955 -97792517 - MIR SINE MIR -78 184 108 286 295 26 0 chr11 50990957 50991035 -97792437 - MLT1K LTR MaLR -7 581 502 356 307 96 6 chr11 50992605 50992771 -97790701 + MER91A DNA MER1_type 16 196 0 1295 249 28 22 chr11 50992951 50993313 -97790159 - MLT1A1 LTR MaLR -1 364 1 426 53 0 0 chr11 50993313 50993370 -97790102 + (CA)n Simple_repeat Simple_repeat 2 58 0 348 208 139 46 chr11 50993403 50993576 -97789896 - LTR33 LTR ERVL -69 452 264 207 243 153 72 chr11 50993833 50993944 -97789528 - MIR SINE MIR -67 141 22 480 324 62 5 chr11 50994676 50994886 -97788586 - MIR SINE MIR -24 238 17 491 233 53 8 chr11 50995224 50995357 -97788115 - MIR SINE MIR -92 170 32 474 181 0 146 chr11 50995492 50995636 -97787836 - MLT1J LTR MaLR -2 509 387 298 278 103 41 chr11 50995650 50995742 -97787730 - LTR67 LTR ERVL -16 541 456 2139 146 39 21 chr11 50995742 50996125 -97787347 - MLT1B LTR MaLR 0 390 1 298 278 103 41 chr11 50996125 50996226 -97787246 - LTR67 LTR ERVL -101 456 336 1006 257 28 24 chr11 50996341 50996629 -97786843 - MLT1J LTR MaLR -218 293 5 535 204 71 0 chr11 50996856 50996969 -97786503 + L2 LINE L2 3193 3313 0 215 226 0 38 chr11 50997019 50997072 -97786400 - MIR SINE MIR -109 153 103 1736 161 0 44 chr11 50997075 50997391 -97786081 - AluJo SINE Alu -10 302 1 389 296 73 34 chr11 50997414 50997593 -97785879 - MIR3 SINE MIR -8 200 15 299 248 208 24 chr11 50998167 50998292 -97785180 + MIR3 SINE MIR 20 167 -41 262 250 17 0 chr11 50998419 50998479 -97784993 - MLT1K LTR MaLR -17 571 511 2312 65 21 0 chr11 50998729 50999019 -97784453 - AluY SINE Alu -15 296 1 21 0 0 0 chr11 50999072 50999093 -97784379 + AT_rich Low_complexity Low_complexity 1 21 0 504 48 0 0 chr11 50999171 50999198 -97784274 + (CA)n Simple_repeat Simple_repeat 1 90 0 504 48 0 0 chr11 50999198 50999261 -97784211 + (CA)n Simple_repeat Simple_repeat 2 64 0 2126 119 14 0 chr11 50999275 50999570 -97783902 - AluSx SINE Alu -13 299 1 21 36 0 0 chr11 50999794 50999822 -97783650 + AT_rich Low_complexity Low_complexity 1 28 0 1335 103 5 16 chr11 50999822 51000006 -97783466 - L1PA8A LINE L1 -3 6128 5947 309 243 75 19 chr11 51000066 51000173 -97783299 + MIR SINE MIR 30 142 -66 1556 168 39 4 chr11 51000189 51000445 -97783027 + AluJb SINE Alu 1 265 -47 327 25 0 0 chr11 51000461 51000501 -97782971 + (CA)n Simple_repeat Simple_repeat 2 41 0 281 303 25 50 chr11 51001799 51001918 -97781554 + MIR SINE MIR 2 117 -145 6929 125 108 113 chr11 51001991 51003697 -97779775 + pTR5 LTR ERV1 741 2438 0 42334 62 3 0 chr11 51003928 51010059 -97773413 - L1PA5 LINE L1 0 6154 7 654 290 23 65 chr11 51010525 51010832 -97772640 + MLT1H LTR MaLR 25 318 -231 529 245 25 53 chr11 51011944 51012219 -97771253 - MLT1J LTR MaLR -162 349 5 1644 183 72 85 chr11 51012361 51012406 -97771066 - L1ME2 LINE L1 -8 6156 6112 252 0 0 0 chr11 51012406 51012434 -97771038 + (CA)n Simple_repeat Simple_repeat 2 29 0 1644 183 72 85 chr11 51012434 51012902 -97770570 - L1ME2 LINE L1 -52 6112 5785 180 0 0 0 chr11 51012902 51012922 -97770550 + (TG)n Simple_repeat Simple_repeat 2 21 0 1644 183 72 85 chr11 51012922 51013013 -97770459 - L1ME2 LINE L1 -379 5785 5694 5404 134 11 2 chr11 51013023 51013863 -97769609 - L1PA16 LINE L1 -5 6161 5315 2327 94 0 3 chr11 51013976 51014275 -97769197 - AluSx SINE Alu -14 298 1 425 221 0 55 chr11 51014887 51015004 -97768468 - L1MC5 LINE L1 -44 7917 7806 1171 206 5 14 chr11 51015004 51015222 -97768250 - MER20 DNA MER1_type 0 219 4 200 214 54 71 chr11 51016218 51016274 -97767198 - L2 LINE L2 -17 3255 3201 360 356 149 0 chr11 51016283 51016505 -97766967 - L2 LINE L2 -2 3270 3016 227 279 80 14 chr11 51016598 51016741 -97766731 - MIR SINE MIR -65 143 18 393 22 0 0 chr11 51017126 51017172 -97766300 + (TG)n Simple_repeat Simple_repeat 1 46 0 2090 150 0 3 chr11 51017453 51017766 -97765706 + AluJb SINE Alu 1 312 0 293 326 43 22 chr11 51018145 51018283 -97765189 + L2 LINE L2 2932 3072 -200 280 323 47 0 chr11 51019450 51019577 -97763895 - L1ME LINE L1 -388 5733 5601 1985 239 132 12 chr11 51019657 51020242 -97763230 + L1MC4 LINE L1 7244 7898 -144 1135 201 48 26 chr11 51020253 51020526 -97762946 - L1MA9 LINE L1 -38 6274 5996 440 189 99 0 chr11 51020582 51020693 -97762779 + L1MC4 LINE L1 7921 8042 0 975 153 7 0 chr11 51020701 51020851 -97762621 + L1PB4 LINE L1 6004 6154 -2 604 131 40 0 chr11 51021037 51021136 -97762336 - L1MA6 LINE L1 0 6300 6198 1835 151 3 13 chr11 51021371 51021670 -97761802 - AluSx SINE Alu -12 300 5 1794 85 0 21 chr11 51021860 51022096 -97761376 - L1PA8A LINE L1 0 6131 5901 286 301 206 0 chr11 51022098 51022244 -97761228 - L1MC/D LINE L1 -2027 6041 5866 3771 180 7 10 chr11 51022248 51022970 -97760502 + L1 LINE L1 4704 5422 -743 617 214 122 122 chr11 51022977 51023314 -97760158 - L1MC/D LINE L1 -2206 5862 5526 325 299 8 21 chr11 51023602 51023746 -97759726 - L1MC/D LINE L1 -1567 4839 4698 556 281 25 21 chr11 51024095 51024333 -97759139 - L1MC5 LINE L1 -60 7901 7663 523 253 112 17 chr11 51024348 51024658 -97758814 - L1MC/D LINE L1 -3737 2669 2374 8307 211 13 7 chr11 51024714 51027203 -97756269 - L1PA16 LINE L1 -8 6158 3635 397 276 28 2 chr11 51027345 51027507 -97755965 - L1MDb LINE L1 -5103 1293 1122 657 303 70 9 chr11 51027759 51028089 -97755383 + L1MC4a LINE L1 5531 5880 -1928 324 0 0 0 chr11 51028141 51028177 -97755295 + (TG)n Simple_repeat Simple_repeat 1 36 0 246 128 0 0 chr11 51028177 51028216 -97755256 + (GA)n Simple_repeat Simple_repeat 2 40 0 553 317 40 5 chr11 51028642 51028844 -97754628 + MIR SINE MIR 16 224 -38 1459 37 0 0 chr11 51029001 51029163 -97754309 + L1PA7 LINE L1 5992 6153 -1 255 361 46 0 chr11 51029438 51029546 -97753926 + MIR SINE MIR 60 172 -90 195 274 65 0 chr11 51029798 51029860 -97753612 + MIR3 SINE MIR 97 162 -46 213 39 0 0 chr11 51029900 51029926 -97753546 + (TG)n Simple_repeat Simple_repeat 1 26 0 180 0 0 0 chr11 51029925 51029945 -97753527 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 657 119 0 85 chr11 51031886 51031905 -97751567 - L1PA10 LINE L1 -5 6163 6144 180 0 0 0 chr11 51031905 51031925 -97751547 + (TTTAA)n Simple_repeat Simple_repeat 3 22 0 657 119 0 85 chr11 51031925 51032023 -97751449 - L1PA10 LINE L1 -24 6144 6056 2724 62 0 22 chr11 51032023 51032381 -97751091 + L1PA10 LINE L1 5603 5952 -216 12724 34 8 0 chr11 51032430 51034620 -97748852 + L1PA4 LINE L1 3958 6155 0 346 274 247 7 chr11 51034752 51034898 -97748574 + MIR3 SINE MIR 19 199 -9 373 208 0 0 chr11 51035833 51035905 -97747567 - MIR SINE MIR -112 150 79 1561 155 39 39 chr11 51036233 51036542 -97746930 - L1MB3 LINE L1 -7 6176 5868 345 164 0 45 chr11 51036735 51036802 -97746670 + MIR SINE MIR 79 142 -120 256 255 108 108 chr11 51038042 51038199 -97745273 + MIR3 SINE MIR 16 172 -36 351 337 101 6 chr11 51039416 51039594 -97743878 - MIR SINE MIR -48 214 20 2215 128 0 7 chr11 51040008 51040313 -97743159 - AluSq SINE Alu -10 303 1 24 0 0 0 chr11 51041206 51041230 -97742242 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chr11 51041230 51041253 -97742219 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2032 98 7 4 chr11 51041255 51041529 -97741943 - AluSq SINE Alu -30 283 9 1814 155 18 0 chr11 51041532 51041842 -97741630 - AluSx SINE Alu 0 315 1 227 270 159 71 chr11 51042197 51042323 -97741149 - MIR SINE MIR -98 164 28 278 227 23 8 chr11 51043185 51043295 -97740177 + (TA)n Simple_repeat Simple_repeat 2 116 -15 2159 128 6 16 chr11 51043295 51043607 -97739865 - AluSx SINE Alu -3 309 1 278 227 23 8 chr11 51043607 51043624 -97739848 + (TA)n Simple_repeat Simple_repeat 116 131 0 1087 214 42 14 chr11 51043776 51043991 -97739481 + MER58A DNA MER1_type 4 224 0 860 211 110 14 chr11 51043999 51044217 -97739255 + Charlie1 DNA MER1_type 1 239 -2522 698 215 0 7 chr11 51044200 51044344 -97739128 + Charlie1 DNA MER1_type 2619 2761 0 * 516 207 45 0 chr11 51044487 51044598 -97738874 + FLAM_A SINE Alu 9 124 -18 1098 30 22 7 chr11 51044788 51044923 -97738549 + L1PA5 LINE L1 6010 6146 -8 380 319 125 6 chr11 51045323 51045483 -97737989 - MIR SINE MIR -74 188 10 2962 163 44 14 chr11 51045788 51046358 -97737114 + L1MB4 LINE L1 5593 6179 -1 270 369 0 0 chr11 51046538 51046649 -97736823 - L1ME LINE L1 -301 5820 5710 26 0 0 0 chr11 51046755 51046781 -97736691 + AT_rich Low_complexity Low_complexity 1 26 0 540 275 14 0 chr11 51047246 51047388 -97736084 - L1ME3A LINE L1 -7 6163 6020 2413 75 3 10 chr11 51047396 51047702 -97735770 - AluSp SINE Alu -9 304 1 2159 133 13 0 chr11 51047702 51048003 -97735469 - AluSx SINE Alu -7 305 1 234 204 0 0 chr11 51049677 51049726 -97733746 - L2 LINE L2 0 3313 3265 529 228 39 54 chr11 51049755 51050014 -97733458 - L2 LINE L2 -232 3081 2827 359 304 54 48 chr11 51050894 51051062 -97732410 + MIR3 SINE MIR 2 140 -68 2169 111 3 3 chr11 51051080 51051369 -97732103 + AluSc SINE Alu 1 289 -20 210 234 0 0 chr11 51051517 51051564 -97731908 - MIR SINE MIR -137 125 79 2109 128 17 3 chr11 51052259 51052556 -97730916 - AluSx SINE Alu -11 301 1 1166 236 43 10 chr11 51052897 51053209 -97730263 - MER33 DNA MER1_type -9 315 1 906 96 9 0 chr11 51053283 51053398 -97730074 + FLAM_C SINE Alu 1 116 -27 30 0 0 0 chr11 51053398 51053428 -97730044 + AT_rich Low_complexity Low_complexity 1 30 0 3084 205 21 34 chr11 51054012 51054801 -97728671 - L1 LINE L1 -945 5201 4423 189 0 0 0 chr11 51055122 51055143 -97728329 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 687 271 64 0 chr11 51055442 51055645 -97727827 - MER58A DNA MER1_type -4 220 5 200 197 8 60 chr11 51055997 51056114 -97727358 + C-rich Low_complexity Low_complexity 4 114 0 837 154 0 37 chr11 51056114 51056250 -97727222 - FLAM_C SINE Alu -2 131 1 503 257 45 59 chr11 51056554 51056780 -97726692 + MIR SINE MIR 14 233 -29 2317 115 0 0 chr11 51057773 51058085 -97725387 - AluSx SINE Alu 0 312 1 1590 156 72 0 chr11 51058087 51058363 -97725109 - AluJo SINE Alu -16 296 1 263 269 0 15 chr11 51058385 51058452 -97725020 - MIR SINE MIR -85 123 58 351 267 82 34 chr11 51058758 51058904 -97724568 - MIR3 SINE MIR -15 193 41 252 167 0 0 chr11 51058946 51058994 -97724478 + (TG)n Simple_repeat Simple_repeat 1 48 0 303 301 166 12 chr11 51059462 51059625 -97723847 + MIR SINE MIR 6 193 -69 2252 99 7 0 chr11 51060078 51060371 -97723101 - AluSx SINE Alu -17 295 1 1008 251 183 26 chr11 51060449 51060667 -97722805 - L1ME4a LINE L1 -14 6107 5924 2241 95 17 7 chr11 51060667 51060961 -97722511 - AluSq SINE Alu -16 297 1 1008 251 183 26 chr11 51060961 51061272 -97722200 - L1ME4a LINE L1 -197 5924 5495 292 309 12 0 chr11 51061977 51062061 -97721411 - MIR SINE MIR -87 121 37 1291 229 164 0 chr11 51062440 51062745 -97720727 - LTR18A LTR ERVL 0 357 3 1507 204 77 50 chr11 51063327 51063687 -97719785 - MLT1C LTR MaLR 0 467 91 7278 45 29 0 chr11 51063687 51065139 -97718333 - L1PA5 LINE L1 -6 6148 4668 1507 204 77 50 chr11 51065139 51065233 -97718239 - MLT1C LTR MaLR -376 91 1 1805 195 56 56 chr11 51065258 51065479 -97717993 - LOR1a LTR ERV1 0 497 277 1721 52 0 0 chr11 51065479 51065672 -97717800 + AluY SINE Alu 1 193 -118 1805 195 56 56 chr11 51065672 51065947 -97717525 - LOR1a LTR ERV1 -219 278 1 641 222 86 62 chr11 51066242 51066485 -97716987 - MIR SINE MIR -4 258 10 466 259 99 0 chr11 51067532 51067663 -97715809 + MIR SINE MIR 48 191 -71 337 262 85 14 chr11 51067745 51067889 -97715583 + MIR SINE MIR 14 168 -40 21 57 0 0 chr11 51068355 51068390 -97715082 + AT_rich Low_complexity Low_complexity 1 35 0 194 337 12 12 chr11 51068653 51068736 -97714736 + MIR SINE MIR 65 147 -61 846 196 70 0 chr11 51068809 51069023 -97714449 - AluJo SINE Alu 0 312 84 1914 138 30 3 chr11 51069351 51069655 -97713817 - AluJo SINE Alu 0 312 1 2075 110 7 7 chr11 51069766 51070056 -97713416 - AluSc SINE Alu -19 290 1 347 221 331 0 chr11 51070231 51070367 -97713105 - MER5A DNA MER1_type 0 189 9 215 295 0 13 chr11 51070440 51070518 -97712954 - L2 LINE L2 -12 3301 3225 2159 117 3 0 chr11 51070641 51070950 -97712522 + AluSx SINE Alu 1 312 0 371 200 90 77 chr11 51071191 51071346 -97712126 - MIR SINE MIR -86 176 20 243 116 70 0 chr11 51071391 51071434 -97712038 + MER5B DNA MER1_type 88 133 -45 1840 160 16 3 chr11 51071442 51071749 -97711723 + AluJb SINE Alu 1 311 -1 610 55 22 0 chr11 51071841 51071932 -97711540 + (TG)n Simple_repeat Simple_repeat 1 93 0 415 198 240 14 chr11 51072173 51072349 -97711123 - Charlie8 DNA MER1_type -2142 275 83 976 180 12 6 chr11 51072384 51072556 -97710916 + FAM SINE Alu 3 175 0 354 217 22 22 chr11 51073476 51073568 -97709904 + L1ME LINE L1 5646 5737 -384 1562 135 8 64 chr11 51073693 51073959 -97709513 + AluJb SINE Alu 40 290 -22 2180 128 3 10 chr11 51074418 51074730 -97708742 - AluSg SINE Alu 0 310 1 581 143 38 0 chr11 51074883 51074988 -97708484 - L1MD3 LINE L1 -166 7829 7721 413 91 11 34 chr11 51075139 51075227 -97708245 + (TCTCCC)n Simple_repeat Simple_repeat 5 90 0 275 255 51 10 chr11 51076023 51076121 -97707351 + MIR SINE MIR 91 192 -70 1074 204 85 0 chr11 51076602 51076803 -97706669 + MER58A DNA MER1_type 1 218 -6 1566 110 5 0 chr11 51076903 51077112 -97706360 - AluSx SINE Alu -102 210 1 2357 84 3 16 chr11 51078099 51078409 -97705063 - AluSc SINE Alu -3 306 1 222 37 0 0 chr11 51078517 51078544 -97704928 + (CA)n Simple_repeat Simple_repeat 2 28 0 2194 109 0 3 chr11 51078568 51078861 -97704611 - AluSx SINE Alu -20 292 1 205 152 0 0 chr11 51080627 51080660 -97702812 + (TG)n Simple_repeat Simple_repeat 2 34 0 432 0 0 0 chr11 51080781 51080829 -97702643 + (TA)n Simple_repeat Simple_repeat 1 48 0 625 167 87 0 chr11 51083208 51083334 -97700138 - MLT1B LTR MaLR 0 390 254 903 127 0 0 chr11 51083334 51083460 -97700012 - AluSg/x SINE Alu -10 300 175 1454 147 24 4 chr11 51083464 51083548 -97699924 - MLT1B LTR MaLR -134 256 175 2341 93 0 7 chr11 51083548 51083849 -97699623 - AluSg SINE Alu -11 299 1 1454 147 24 4 chr11 51083849 51084015 -97699457 - MLT1B LTR MaLR -215 175 1 2656 45 0 3 chr11 51084773 51085081 -97698391 - AluY SINE Alu -4 307 1 1552 180 153 63 chr11 51085507 51086002 -97697470 + MLT1F LTR MaLR 1 540 -2 710 262 31 18 chr11 51086225 51086454 -97697018 - L1ME3A LINE L1 -8 6162 5931 1040 173 0 0 chr11 51086480 51086642 -97696830 - FRAM SINE Alu -18 158 1 2126 131 0 7 chr11 51086651 51086949 -97696523 - AluSq SINE Alu -17 296 1 665 295 60 45 chr11 51086951 51087240 -97696232 - L1ME3A LINE L1 -230 5891 5593 1653 178 24 10 chr11 51087240 51087532 -97695940 + AluJb SINE Alu 1 296 -16 665 295 60 45 chr11 51087532 51087645 -97695827 - L1ME3A LINE L1 -528 5593 5483 2207 153 20 65 chr11 51087708 51088098 -97695374 - MSTB LTR MaLR 0 426 57 2093 129 7 0 chr11 51088098 51088400 -97695072 - AluSq SINE Alu -7 306 3 2207 153 20 65 chr11 51088400 51088455 -97695017 - MSTB LTR MaLR -369 57 1 245 290 35 53 chr11 51088846 51089015 -97694457 + L3 LINE CR1 1221 1386 -191 1215 233 138 52 chr11 51089431 51089930 -97693542 - LTR10B LTR ERV1 -5 542 1 215 250 238 0 chr11 51090088 51090172 -97693300 + MIR SINE MIR 159 262 0 224 310 100 0 chr11 51090216 51090316 -97693156 + L2 LINE L2 3160 3269 -3 1802 108 25 14 chr11 51090715 51090992 -97692480 + L1PA13 LINE L1 5884 6163 0 705 163 8 23 chr11 51091091 51091220 -97692252 - FLAM_A SINE Alu -6 127 1 1622 148 7 49 chr11 51091978 51092283 -97691189 - AluJo SINE Alu -20 292 1 2157 112 3 3 chr11 51092516 51092802 -97690670 - AluSx SINE Alu -26 286 1 267 298 12 12 chr11 51092928 51093012 -97690460 - MIR SINE MIR -158 104 21 259 333 29 19 chr11 51093275 51093380 -97690092 + MIR SINE MIR 59 164 -98 2224 110 3 0 chr11 51093632 51093924 -97689548 - AluSx SINE Alu -15 297 5 234 163 70 0 chr11 51094615 51094658 -97688814 - MLT1J2 LTR MaLR -14 436 391 507 302 60 28 chr11 51094685 51094839 -97688633 - MLT1J1 LTR MaLR -138 308 146 1199 231 31 62 chr11 51094839 51095194 -97688278 - MER2 DNA MER2_type 0 344 1 507 302 60 28 chr11 51095194 51095221 -97688251 - MLT1J1 LTR MaLR -300 146 121 239 270 40 0 chr11 51095224 51095298 -97688174 - MLT1J2 LTR MaLR -373 77 1 292 271 16 25 chr11 51096019 51096141 -97687331 - L1MC4a LINE L1 -1911 5897 5777 2098 136 7 7 chr11 51096237 51096547 -97686925 - AluSx SINE Alu -2 310 1 597 270 78 17 chr11 51096938 51097168 -97686304 - MLT1J2 LTR MaLR -206 244 1 288 140 20 0 chr11 51097185 51097234 -97686238 - MSTB1 LTR MaLR 0 432 383 2306 116 14 23 chr11 51097234 51097588 -97685884 + MER4E LTR ERV1 1 351 -428 2713 56 0 9 chr11 51097602 51097944 -97685528 - L1PA4 LINE L1 -3 6152 5814 198 0 0 0 chr11 51097997 51098019 -97685453 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 37905 41 5 0 chr11 51098019 51104142 -97679330 - L1PA3 LINE L1 -10 6145 1 2435 146 22 40 chr11 51104149 51104601 -97678871 + MER4E LTR ERV1 336 779 0 1756 184 27 27 chr11 51104624 51104998 -97678474 - MSTB1 LTR MaLR -58 374 1 237 272 79 35 chr11 51105002 51105204 -97678268 - L1MC4a LINE L1 -2265 5543 5333 476 278 57 18 chr11 51105695 51106025 -97677447 + L1M4b LINE L1 -515 252 -6032 514 318 56 47 chr11 51106068 51106427 -97677045 + L1M4b LINE L1 257 618 -5662 249 291 23 0 chr11 51106488 51106574 -97676898 + L1M4b LINE L1 635 722 -5562 1108 261 114 18 chr11 51106593 51106878 -97676594 + L1M4b LINE L1 1362 1618 -4945 1999 113 4 14 chr11 51106878 51107153 -97676319 + AluSq SINE Alu 1 272 -41 1108 261 114 18 chr11 51107153 51107452 -97676020 + L1M4b LINE L1 1618 2139 -4424 861 254 86 45 chr11 51107459 51108276 -97675196 + L1MEc LINE L1 1736 2516 -3699 6585 218 58 26 chr11 51108303 51108613 -97674859 - L1M4c LINE L1 -4516 2137 1838 2006 127 173 16 chr11 51108613 51108983 -97674489 + MSTA LTR MaLR 1 428 0 6585 218 58 26 chr11 51108983 51109919 -97673553 - L1M4c LINE L1 -4815 1838 933 2378 98 0 0 chr11 51109919 51110226 -97673246 + AluY SINE Alu 1 307 -4 6585 218 58 26 chr11 51110226 51110548 -97672924 - L1M4c LINE L1 -5720 933 718 770 188 0 0 chr11 51110548 51110676 -97672796 + FLAM_C SINE Alu 1 128 -5 6585 218 58 26 chr11 51110676 51110836 -97672636 - L1M4c LINE L1 -5935 718 564 2555 124 5 28 chr11 51110893 51111327 -97672145 - L1PB2 LINE L1 0 6151 5728 351 114 62 2 chr11 51111347 51111420 -97672052 - L1M1 LINE L1 -360 5791 5728 342 215 0 0 chr11 51111420 51111499 -97671973 + (TA)n Simple_repeat Simple_repeat 2 80 0 303 326 0 0 chr11 51111504 51111593 -97671879 - L1MC4 LINE L1 -1339 6703 6615 * 304 291 47 0 chr11 51111576 51111662 -97671810 + L1MC4 LINE L1 6614 6703 -1339 * 348 261 0 22 chr11 51111630 51111722 -97671750 - L1MC4 LINE L1 -1339 6703 6614 258 220 0 0 chr11 51111731 51111790 -97671682 + (TA)n Simple_repeat Simple_repeat 2 60 0 233 273 0 11 chr11 51111790 51111878 -97671594 - L1MC4 LINE L1 -1339 6703 6617 * 314 203 0 0 chr11 51111868 51111932 -97671540 - L1P5 LINE L1 -360 5791 5728 228 86 0 0 chr11 51111939 51111974 -97671498 + (TG)n Simple_repeat Simple_repeat 2 36 0 2019 108 12 18 chr11 51111980 51112313 -97671159 - L1P5 LINE L1 -360 5791 5461 9541 156 37 5 chr11 51112324 51113915 -97669557 + L1PBa LINE L1 1311 2849 -4013 2525 114 14 0 chr11 51113915 51114274 -97669198 + THE1B LTR MaLR 1 364 0 9541 156 37 5 chr11 51114274 51115831 -97667641 + L1PBa LINE L1 2849 4563 -2299 4343 287 117 25 chr11 51115831 51116441 -97667031 - L1P LINE L1 -1301 4845 4292 1836 161 14 0 chr11 51116441 51116721 -97666751 - AluSx SINE Alu -15 297 14 4343 287 117 25 chr11 51116721 51118099 -97665373 - L1P LINE L1 -1854 4292 2675 5797 128 2 15 chr11 51118108 51119577 -97663895 + L1PA16 LINE L1 4708 6165 -1 22 0 0 0 chr11 51119788 51119810 -97663662 + AT_rich Low_complexity Low_complexity 1 22 0 381 58 0 0 chr11 51120005 51120057 -97663415 + (TTTA)n Simple_repeat Simple_repeat 2 53 0 320 178 27 14 chr11 51120216 51120289 -97663183 - MLT1J LTR MaLR -331 180 107 343 317 37 31 chr11 51120533 51120694 -97662778 - MIR SINE MIR -6 256 95 2056 74 4 0 chr11 51120707 51120976 -97662496 - L1PA7 LINE L1 -2 6152 5883 2095 133 13 0 chr11 51121289 51121597 -97661875 - AluSx SINE Alu 0 312 1 371 272 33 0 chr11 51122064 51122156 -97661316 + MIR SINE MIR 168 262 0 360 344 8 0 chr11 51122226 51122348 -97661124 - MIR3 SINE MIR -8 200 78 343 298 30 23 chr11 51123002 51123133 -97660339 + MIR3 SINE MIR 75 206 -2 350 266 55 16 chr11 51123438 51123566 -97659906 + MIR3 SINE MIR 72 204 -4 267 343 197 24 chr11 51123917 51124130 -97659342 - MIR SINE MIR 0 262 13 1563 191 48 7 chr11 51125171 51125464 -97658008 + AluJo SINE Alu 1 305 -7 283 380 31 10 chr11 51125619 51125811 -97657661 - L2 LINE L2 -428 2886 2691 180 356 17 26 chr11 51126407 51126522 -97656950 - L2 LINE L2 -788 2526 2413 4685 217 44 46 chr11 51176921 51178553 -97604919 - L1PBa LINE L1 -2609 4253 2632 245 29 0 29 chr11 51178553 51178588 -97604884 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 10104 119 12 0 chr11 51178589 51181030 -97602442 - L1PA8 LINE L1 -25 6147 3679 * 25158 47 4 0 chr11 51181018 51185098 -97598374 - L1PA4 LINE L1 0 6155 2064 6226 67 21 0 chr11 51185100 51185919 -97597553 + L1PA4 LINE L1 5317 6152 -3 892 151 125 16 chr11 51185931 51186209 -97597263 + PABL_A-int LTR ERV1 3009 4355 -525 2687 112 76 28 chr11 51186213 51186714 -97596758 + PABL_A-int LTR ERV1 3912 4436 -2162 1876 131 23 51 chr11 51186716 51187278 -97596194 + PABL_A-int LTR ERV1 4142 4765 -250 40862 52 2 1 chr11 51187281 51192657 -97590815 + L1P LINE L1 2 5383 -763 357 123 0 0 chr11 51192657 51192714 -97590758 + MER4A LTR ERV1 608 664 0 9305 193 42 8 chr11 51192714 51194700 -97588772 - L1PBa LINE L1 -4810 2053 1 4860 104 23 14 chr11 51194700 51195538 -97587934 - L1M1 LINE L1 -4517 3048 2204 2073 201 38 2 chr11 51195542 51195959 -97587513 - L1M1 LINE L1 -6673 892 461 1546 246 44 10 chr11 51195971 51196559 -97586913 - L1M2 LINE L1 -693 6619 6001 * 7134 46 0 1 chr11 51196554 51197518 -97585954 - L1P LINE L1 -2458 3688 2726 * 7684 179 35 7 chr11 51197517 51199197 -97584275 - L1M2 LINE L1 -1168 5999 4272 729 287 18 9 chr11 51199187 51199518 -97583954 - L1M2 LINE L1 -4846 2252 1919 * 474 370 56 37 chr11 51199583 51199961 -97583511 - L1M2 LINE L1 -5288 1880 1496 572 46 93 0 chr11 51200686 51200882 -97582590 + (TA)n Simple_repeat Simple_repeat 1 214 0 27 29 0 0 chr11 51200882 51200916 -97582556 + AT_rich Low_complexity Low_complexity 1 34 0 231 36 0 0 chr11 51202443 51202471 -97581001 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 241 325 13 0 chr11 51202475 51202552 -97580920 - MIR SINE MIR -94 114 37 302 294 76 8 chr11 51202861 51202980 -97580492 + MIR SINE MIR 99 225 -37 475 320 0 8 chr11 51203095 51203220 -97580252 - L2 LINE L2 -1 3312 3189 312 327 9 0 chr11 51203225 51203338 -97580134 - MIR SINE MIR -2 260 147 2563 47 0 0 chr11 51203604 51203902 -97579570 + AluY SINE Alu 1 298 -13 233 226 19 0 chr11 51204022 51204075 -97579397 + (TATG)n Simple_repeat Simple_repeat 4 57 0 1644 128 4 8 chr11 51204101 51204344 -97579128 - AluSx SINE Alu -70 242 1 342 288 166 12 chr11 51204712 51204875 -97578597 + MIR3 SINE MIR 16 203 -5 30 69 0 0 chr11 51205490 51205548 -97577924 + AT_rich Low_complexity Low_complexity 1 58 0 1038 264 65 11 chr11 51205740 51206184 -97577288 - L1ME3 LINE L1 -211 5951 5484 1022 224 8 42 chr11 51206234 51206497 -97576975 - MLT1A1 LTR MaLR 0 365 112 497 277 131 8 chr11 51206511 51206778 -97576694 + L1M4 LINE L1 5087 5386 -760 482 330 29 46 chr11 51206858 51207097 -97576375 - LTR16A1 LTR ERVL -34 423 189 974 249 24 67 chr11 51207222 51207596 -97575876 + MSTD LTR MaLR 1 358 -38 6387 97 4 11 chr11 51207596 51208973 -97574499 + L1PA11 LINE L1 4801 6172 -2 12666 186 82 3 chr11 51208973 51211587 -97571885 - L1M1 LINE L1 -4728 2837 17 5035 157 38 23 chr11 51211603 51212956 -97570516 + L1MA7 LINE L1 4892 6262 -29 1321 253 72 36 chr11 51213210 51213547 -97569925 - L1ME3A LINE L1 -219 5951 5628 234 0 0 0 chr11 51213547 51213573 -97569899 + (TA)n Simple_repeat Simple_repeat 2 27 0 1321 253 72 36 chr11 51213573 51213899 -97569573 - L1ME3A LINE L1 -542 5628 5264 494 235 126 77 chr11 51213899 51214146 -97569326 - LTR16B LTR ERVL 0 464 206 246 176 20 0 chr11 51214430 51214481 -97568991 - L1MC/D LINE L1 -2138 5670 5619 2981 166 42 38 chr11 51214579 51215193 -97568279 + LTR31 LTR ERV1 1 617 -2 238 430 0 20 chr11 51215287 51215387 -97568085 + L2 LINE L2 3128 3225 -47 299 339 17 42 chr11 51216155 51216273 -97567199 + MIR3 SINE MIR 9 123 -85 199 378 0 27 chr11 51216274 51216348 -97567124 + MIR SINE MIR 64 135 -73 395 209 18 27 chr11 51216409 51216519 -97566953 + L1MD2 LINE L1 6241 6349 -10 * 489 249 113 6 chr11 51216518 51216695 -97566777 + L1MEc LINE L1 1627 1822 -4574 365 279 156 34 chr11 51217507 51217686 -97565786 - MIR SINE MIR -12 250 50 616 261 174 5 chr11 51217700 51217895 -97565577 + MIR SINE MIR 1 228 -34 1916 205 57 49 chr11 51218274 51218767 -97564705 - LOR1a LTR ERV1 0 497 1 2073 146 0 0 chr11 51220785 51221079 -97562393 - AluSx SINE Alu -18 294 1 207 215 11 97 chr11 51221109 51221202 -97562270 - MIR SINE MIR -56 206 122 266 321 12 79 chr11 51221477 51221540 -97561932 + MIR SINE MIR 1 67 -195 2281 93 10 3 chr11 51221540 51221842 -97561630 - AluY SINE Alu -7 304 1 2737 74 16 0 chr11 51221843 51222207 -97561265 - L1PA10 LINE L1 -1 6167 5798 266 321 12 79 chr11 51222207 51222306 -97561166 + MIR SINE MIR 66 154 -108 757 161 0 0 chr11 51222306 51222436 -97561036 - L1MA8 LINE L1 -352 5939 5810 313 306 41 0 chr11 51222474 51222572 -97560900 + MIR SINE MIR 145 246 -16 4883 140 35 88 chr11 51222601 51223732 -97559740 - MER11C LTR ERVK 0 1071 1 1868 96 68 0 chr11 51224155 51224435 -97559037 + L1PA15 LINE L1 5860 6158 -7 265 60 0 40 chr11 51224796 51224846 -97558626 + (TTTTA)n Simple_repeat Simple_repeat 1 48 0 3549 39 2 0 chr11 51224846 51225287 -97558185 - L1PA3 LINE L1 -24 6131 5690 305 206 0 15 chr11 51225658 51225726 -97557746 - L1ME4a LINE L1 -83 6038 5972 210 275 0 0 chr11 51225739 51225808 -97557664 + CT-rich Low_complexity Low_complexity 5 73 0 411 253 38 2 chr11 51225972 51226136 -97557336 - L1ME4a LINE L1 -308 5813 5642 191 203 152 51 chr11 51226514 51226593 -97556879 - L2 LINE L2 -494 2820 2734 311 281 88 35 chr11 51226805 51227190 -97556282 + L1ME LINE L1 5177 5593 -573 205 156 0 0 chr11 51227540 51227572 -97555900 + (TG)n Simple_repeat Simple_repeat 1 32 0 2810 45 22 0 chr11 51227730 51228085 -97555387 - L1PA4 LINE L1 -2 6153 5791 180 280 196 14 chr11 51228488 51228631 -97554841 + MIR SINE MIR 88 256 -6 22 0 0 0 chr11 51229166 51229188 -97554284 + AT_rich Low_complexity Low_complexity 1 22 0 439 353 42 12 chr11 51229275 51229516 -97553956 + MIR SINE MIR 2 249 -13 1264 109 10 0 chr11 51229697 51229899 -97553573 + L1MA8 LINE L1 6009 6212 -79 378 159 16 0 chr11 51229996 51230059 -97553413 - MER66-int LTR ERV1 0 6676 6613 8438 277 38 20 chr11 51230179 51235287 -97548185 - MER66-int LTR ERV1 -1580 6176 1253 2748 61 9 0 chr11 51235485 51235830 -97547642 + L1PA8 LINE L1 5806 6153 -19 186 43 0 0 chr11 51235833 51235856 -97547616 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 349 93 0 19 chr11 51236047 51236101 -97547371 - MER66-int LTR ERV1 -5609 1067 1015 388 283 19 0 chr11 51236178 51236284 -97547188 - MER66-int LTR ERV1 -6169 507 400 1694 197 39 57 chr11 51236365 51236822 -97546650 - MER41B LTR ERV1 -36 599 151 325 137 55 0 chr11 51236864 51236937 -97546535 + L1MA8 LINE L1 6209 6285 -6 3944 55 49 2 chr11 51237135 51237642 -97545830 - L1PA7 LINE L1 -13 6141 5611 2388 54 3 3 chr11 51238211 51238506 -97544966 - AluY SINE Alu -16 295 1 321 285 105 29 chr11 51238709 51238881 -97544591 - MIR SINE MIR -66 196 12 2125 131 0 0 chr11 51239178 51239469 -97544003 + AluSx SINE Alu 3 293 -19 726 189 135 33 chr11 51239675 51239919 -97543553 + ORSL DNA AcHobo 4 272 -3 40756 51 3 4 chr11 51240694 51246849 -97536623 + L1PA4 LINE L1 1 6147 -8 3269 217 134 54 chr11 51250417 51251555 -97531917 - L1M3e LINE L1 -5769 1261 32 1083 153 128 17 chr11 51251685 51251920 -97531552 - MSTA LTR MaLR 0 428 168 6739 143 26 48 chr11 51251927 51253500 -97529972 - MSTA-int LTR MaLR -33 1547 3 1901 154 156 3 chr11 51253502 51253873 -97529599 - MSTA LTR MaLR 0 428 1 4008 156 16 21 chr11 51253883 51255519 -97527953 + L1PB3 LINE L1 4480 6154 0 259 95 143 16 chr11 51255519 51255582 -97527890 + Charlie1 DNA MER1_type 2479 2549 -212 395 231 9 9 chr11 51255582 51255690 -97527782 + HAL1 LINE L1 1268 1375 -1132 4276 127 27 17 chr11 51255766 51256352 -97527120 - LTR62 LTR ERVK -5 714 135 492 59 0 0 chr11 51256352 51256420 -97527052 + (TATG)n Simple_repeat Simple_repeat 2 69 0 1905 161 0 0 chr11 51256420 51256706 -97526766 - AluSx SINE Alu -26 286 1 4276 127 27 17 chr11 51256706 51256825 -97526647 - LTR62 LTR ERVK -583 136 1 734 234 47 5 chr11 51256825 51257039 -97526433 + HAL1 LINE L1 1425 1647 -860 722 280 39 31 chr11 51257041 51257327 -97526145 + MLT1H LTR MaLR 1 288 -261 302 261 132 18 chr11 51257418 51257576 -97525896 - L1 LINE L1 -863 5283 5113 347 248 62 41 chr11 51257639 51257784 -97525688 + HAL1 LINE L1 2298 2445 -62 269 273 50 65 chr11 51257831 51257970 -97525502 + L2 LINE L2 2536 2672 -642 306 0 0 0 chr11 51257993 51258027 -97525445 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 355 286 20 98 chr11 51258384 51258681 -97524791 - MLT1I LTR MaLR -3 406 133 1976 153 3 0 chr11 51259106 51259407 -97524065 - AluSx SINE Alu -10 302 1 219 274 0 0 chr11 51261315 51261377 -97522095 + (CA)n Simple_repeat Simple_repeat 1 62 0 213 94 0 0 chr11 51261528 51261560 -97521912 + (T)n Simple_repeat Simple_repeat 1 32 0 277 366 16 16 chr11 51262033 51262156 -97521316 + MIR SINE MIR 32 154 -108 186 191 0 0 chr11 51262650 51262692 -97520780 + A-rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr11 51262781 51262804 -97520668 + AT_rich Low_complexity Low_complexity 1 23 0 229 280 89 19 chr11 51263191 51263348 -97520124 + L1ME4a LINE L1 5615 5782 -339 29 28 0 0 chr11 51263382 51263418 -97520054 + AT_rich Low_complexity Low_complexity 1 36 0 348 306 76 0 chr11 51263522 51263679 -97519793 + L1ME4a LINE L1 5953 6121 0 214 268 36 0 chr11 51264943 51264999 -97518473 + MIR SINE MIR 150 207 -55 2153 131 3 0 chr11 51265117 51265415 -97518057 - AluSq SINE Alu -14 299 1 516 227 99 7 chr11 51265428 51265569 -97517903 + MIR SINE MIR 73 226 -36 409 278 91 28 chr11 51265942 51266118 -97517354 - MIR SINE MIR -70 192 6 506 232 71 0 chr11 51266773 51266885 -97516587 + MIR SINE MIR 79 198 -64 182 327 118 7 chr11 51266846 51266999 -97516473 - L2 LINE L2 -1541 1773 1604 * 209 239 120 0 chr11 51267245 51267362 -97516110 - L2 LINE L2 -1572 1742 1612 518 254 80 40 chr11 51267410 51267709 -97515763 + MLT1L LTR MaLR 4 314 -301 1967 138 16 62 chr11 51267903 51268110 -97515362 - L1PA15 LINE L1 0 6165 5981 2294 100 10 0 chr11 51268110 51268409 -97515063 - AluSx SINE Alu -8 304 3 1967 138 16 62 chr11 51268409 51268570 -97514902 - L1PA15 LINE L1 -184 5981 5814 1463 169 11 50 chr11 51268820 51269099 -97514373 - AluJo SINE Alu -44 268 1 451 224 37 0 chr11 51269100 51269234 -97514238 + L1M4 LINE L1 4095 4233 -1913 1064 219 7 30 chr11 51269235 51269505 -97513967 - MER76 LTR ERV 0 688 425 8621 160 42 11 chr11 51269508 51270105 -97513367 - L1PBa LINE L1 -2319 4543 3966 2116 146 10 0 chr11 51270105 51270413 -97513059 - AluSx SINE Alu -1 311 1 8621 160 42 11 chr11 51270413 51273465 -97510007 - L1PBa LINE L1 -2896 3966 634 973 174 26 0 chr11 51273465 51273660 -97509812 - L1PBa LINE L1 -6663 200 1 2414 197 40 67 chr11 51273711 51273849 -97509623 - LTR9 LTR ERV1 0 612 472 180 0 0 0 chr11 51273849 51273869 -97509603 + (GA)n Simple_repeat Simple_repeat 2 21 0 2414 197 40 67 chr11 51273869 51274359 -97509113 - LTR9 LTR ERV1 -140 472 1 2171 223 34 39 chr11 51274361 51275062 -97508410 - LTR9-int LTR ERV1 -1 6995 6298 7280 150 55 43 chr11 51275092 51277224 -97506248 - LTR9-int LTR ERV1 -1803 5615 3510 3220 197 49 18 chr11 51277224 51277894 -97505578 + LTR8 LTR ERV1 1 691 0 7280 150 55 43 chr11 51277894 51278587 -97504885 - LTR9-int LTR ERV1 -3908 3510 608 3995 191 48 36 chr11 51278591 51280275 -97503197 - HUERS-P3b LTR ERV1 -5694 1724 15 1893 201 77 67 chr11 51280280 51280895 -97502577 - LTR9 LTR ERV1 -1 793 1 4346 123 6 14 chr11 51280896 51281674 -97501798 - L1M1 LINE L1 -4078 3487 2716 22076 48 4 3 chr11 51281675 51285296 -97498176 - L1PA4 LINE L1 0 6155 2552 9853 105 6 1 chr11 51285296 51286748 -97496724 - L1PA4 LINE L1 -4682 1464 7 2222 114 13 8 chr11 51286761 51287147 -97496325 - L1M1 LINE L1 -4839 2726 2339 12814 25 0 0 chr11 51287157 51288749 -97494723 - L1PA2 LINE L1 -743 5403 3812 6264 26 0 0 chr11 51288749 51289475 -97493997 + L1PA2 LINE L1 5428 6153 -2 3959 168 28 113 chr11 51290098 51291187 -97492285 - L1M1 LINE L1 -5218 2347 1352 472 215 15 22 chr11 51291184 51291319 -97492153 - L1M1 LINE L1 -7410 155 22 * 2765 246 96 31 chr11 51291449 51292131 -97491341 + L1M4 LINE L1 -258 507 -5773 2188 122 3 0 chr11 51292131 51292425 -97491047 + AluY SINE Alu 1 295 -16 2765 246 96 31 chr11 51292425 51292709 -97490763 + L1M4 LINE L1 507 771 -5509 1669 206 11 17 chr11 51292710 51293070 -97490402 - MLT1A1 LTR MaLR -5 360 3 202 328 0 0 chr11 51293077 51293138 -97490334 + (TA)n Simple_repeat Simple_repeat 1 61 0 2568 272 35 14 chr11 51293139 51294075 -97489397 + L1M4 LINE L1 785 1740 -4644 4245 30 1 0 chr11 51294077 51294690 -97488782 - L1P1 LINE L1 -690 5465 4852 4767 39 0 0 chr11 51294690 51295251 -97488221 + L1PA3 LINE L1 5591 6155 0 355 275 17 55 chr11 51295255 51295530 -97487942 + L1M4 LINE L1 1730 2138 -4425 724 239 0 53 chr11 51295569 51295812 -97487660 + L1M4 LINE L1 2433 2662 -3720 794 183 70 32 chr11 51295818 51296004 -97487468 - MLT1A1 LTR MaLR -48 317 125 3848 215 40 31 chr11 51296016 51297265 -97486207 + L1M4 LINE L1 2670 3929 -2453 38729 53 5 1 chr11 51297266 51303194 -97480278 + L1PA4 LINE L1 204 6155 0 373 188 21 188 chr11 51303203 51303437 -97480035 + L1M4 LINE L1 3920 4114 -2268 198 118 0 0 chr11 51304393 51304427 -97479045 + (T)n Simple_repeat Simple_repeat 1 34 0 465 303 59 9 chr11 51304431 51304754 -97478718 - L1MC4a LINE L1 -1856 5952 5614 39359 59 3 6 chr11 51304781 51310957 -97472515 - L1PA4 LINE L1 -3 6152 3 251 306 63 45 chr11 51312241 51312352 -97471120 + MIR SINE MIR 34 146 -62 616 288 34 47 chr11 51312603 51312836 -97470636 + MIR SINE MIR 33 262 0 225 227 196 10 chr11 51314244 51314341 -97469131 - L1ME4a LINE L1 0 6121 6007 21 36 0 0 chr11 51314412 51314440 -97469032 + AT_rich Low_complexity Low_complexity 1 28 0 313 192 19 67 chr11 51316402 51316506 -97466966 - LTR41 LTR ERVL -10 763 665 373 250 0 37 chr11 51317051 51317187 -97466285 - LTR41 LTR ERVL -641 132 2 1693 148 74 0 chr11 51317512 51317783 -97465689 - AluSx SINE Alu -21 291 1 7424 43 6 6 chr11 51318759 51321844 -97461628 - L1PA4 LINE L1 -4 6151 3009 1421 74 0 0 chr11 51321841 51322031 -97461441 + L1P LINE L1 593 782 -5364 * 1307 151 4 4 chr11 51322027 51322265 -97461207 - L1PB1 LINE L1 -48 6103 5866 * 1514 183 34 17 chr11 51322346 51322695 -97460777 - L1MA9 LINE L1 -1 6311 5957 925 269 108 19 chr11 51322951 51323367 -97460105 - LTR16A1 LTR ERVL -4 453 1 405 352 56 25 chr11 51323372 51323656 -97459816 + L2 LINE L2 2561 2853 -461 281 265 0 29 chr11 51323672 51323740 -97459732 + L2 LINE L2 3207 3272 0 2106 121 6 22 chr11 51323873 51324188 -97459284 - AluSg SINE Alu 0 310 1 262 304 23 108 chr11 51324200 51324414 -97459058 + L2 LINE L2 3077 3272 0 2308 206 40 6 chr11 51324496 51325040 -97458432 - L1PA12 LINE L1 -7018 563 1 355 335 128 0 chr11 51325860 51326024 -97457448 + MIR SINE MIR 2 186 -76 2724 40 0 0 chr11 51326289 51326617 -97456855 - L1PA4 LINE L1 0 6155 5828 1999 123 7 7 chr11 51328175 51328460 -97455012 + AluSc SINE Alu 1 285 -24 207 259 27 18 chr11 51328703 51328815 -97454657 + (TAA)n Simple_repeat Simple_repeat 2 114 0 376 302 8 32 chr11 51328867 51328993 -97454479 - MIR SINE MIR -83 179 57 2261 100 0 0 chr11 51329356 51329657 -97453815 + AluY SINE Alu 1 301 -10 1415 73 0 0 chr11 51329657 51329834 -97453638 + AluY SINE Alu 133 309 -2 405 308 44 39 chr11 51329884 51330066 -97453406 + MIR SINE MIR 51 233 -29 193 311 57 19 chr11 51330394 51330500 -97452972 + MIR SINE MIR 79 188 -74 270 107 36 18 chr11 51330759 51330815 -97452657 + L1MA10 LINE L1 6265 6321 -13 34 0 0 0 chr11 51331485 51331519 -97451953 + AT_rich Low_complexity Low_complexity 1 34 0 241 248 89 0 chr11 51331519 51331620 -97451852 - L1MA9 LINE L1 -22 6290 6181 1353 165 11 30 chr11 51331622 51331889 -97451583 - L1MA9 LINE L1 -230 6082 5821 2262 216 87 51 chr11 51331902 51332880 -97450592 - L1M4 LINE L1 -1099 5047 4035 303 251 48 71 chr11 51332952 51333199 -97450273 - L1M4 LINE L1 -2877 3269 3033 2018 111 32 4 chr11 51333199 51333479 -97449993 - AluSg SINE Alu -22 288 1 303 251 48 71 chr11 51333479 51333610 -97449862 - L1M4 LINE L1 -3113 3033 2900 1115 212 87 3 chr11 51333652 51333756 -97449716 - L1MB5 LINE L1 -42 6132 6029 2322 189 39 13 chr11 51333756 51334591 -97448881 - L1MC4 LINE L1 -373 5801 5128 398 217 0 0 chr11 51334761 51334866 -97448606 - L1MC4 LINE L1 -1583 4563 4459 751 137 16 0 chr11 51334897 51335021 -97448451 + L1PA7 LINE L1 5475 5600 -566 1384 150 8 8 chr11 51335022 51335268 -97448204 - L1PB4 LINE L1 0 6859 6614 1690 90 8 0 chr11 51335271 51335505 -97447967 + L1PA7 LINE L1 5918 6153 -1 9722 203 44 20 chr11 51335521 51335666 -97447806 - L1PB4 LINE L1 -216 6643 6503 228 67 0 0 chr11 51335666 51335696 -97447776 + (TG)n Simple_repeat Simple_repeat 2 31 0 9722 203 44 20 chr11 51335696 51338886 -97444586 - L1PB4 LINE L1 -356 6503 3232 28 29 0 0 chr11 51338918 51338953 -97444519 + AT_rich Low_complexity Low_complexity 1 35 0 1387 98 0 0 chr11 51338979 51339163 -97444309 - AluY SINE Alu -10 301 118 761 139 0 0 chr11 51340104 51340219 -97443253 - FRAM SINE Alu -19 157 43 207 0 0 0 chr11 51340229 51340252 -97443220 + (TA)n Simple_repeat Simple_repeat 2 24 0 476 33 0 0 chr11 51340252 51340313 -97443159 - L1PA6 LINE L1 -2 6152 6092 5632 37 0 1 chr11 51340314 51341491 -97441981 + L1PA4 LINE L1 4785 5959 -196 996 97 52 0 chr11 51341495 51341629 -97441843 - AluY SINE Alu -170 141 1 24 32 0 0 chr11 51341640 51341671 -97441801 + AT_rich Low_complexity Low_complexity 1 31 0 32675 106 8 30 chr11 51341728 51341974 -97441498 - L1PA7 LINE L1 -2 6152 5902 3517 118 6 4 chr11 51341974 51342484 -97440988 - MER9 LTR ERVK 0 511 1 32675 106 8 30 chr11 51342484 51348517 -97434955 - L1PA7 LINE L1 -252 5902 22 1085 237 17 36 chr11 51348527 51348831 -97434641 - L1PB4 LINE L1 -3634 3215 2924 2044 154 0 0 chr11 51348831 51349123 -97434349 - AluSx SINE Alu -20 292 1 1085 237 17 36 chr11 51349123 51349315 -97434157 - L1PB4 LINE L1 -3925 2924 2730 2218 170 68 0 chr11 51349326 51349726 -97433746 - MSTA LTR MaLR 0 428 2 3808 172 133 10 chr11 51349727 51350518 -97432954 - MSTA-int LTR MaLR 0 1651 764 568 261 51 35 chr11 51350516 51350880 -97432592 - L1PB4 LINE L1 -5021 1828 1336 * 418 239 0 0 chr11 51350866 51350958 -97432514 - L1PB4 LINE L1 -5286 1563 1472 * 251 291 141 9 chr11 51350958 51351178 -97432294 - L1PB4 LINE L1 -5286 1563 1315 1674 279 180 26 chr11 51351676 51352497 -97430975 - L1PB4 LINE L1 -5893 957 10 1436 243 38 38 chr11 51352545 51352972 -97430500 - L1M4 LINE L1 -1868 4278 3849 1695 164 17 20 chr11 51352972 51353265 -97430207 - AluJo SINE Alu -20 292 1 1436 243 38 38 chr11 51353265 51353443 -97430029 - L1M4 LINE L1 -2296 3850 3673 791 117 0 0 chr11 51353659 51353787 -97429685 + L1MA5A LINE L1 6164 6291 -6 357 204 70 129 chr11 51353808 51353994 -97429478 - L1ME LINE L1 -691 5430 5256 902 288 55 19 chr11 51354108 51354761 -97428711 - L1ME LINE L1 -2775 3371 2694 930 224 136 13 chr11 51355003 51355231 -97428241 - ERVL LTR ERVL -4846 918 663 667 271 122 63 chr11 51355375 51355800 -97427672 - LTR16A1 LTR ERVL 0 457 8 272 335 37 31 chr11 51355826 51356017 -97427455 + L2 LINE L2 2576 2767 -547 240 247 94 24 chr11 51356082 51356167 -97427305 + L2 LINE L2 3223 3313 0 248 351 61 72 chr11 51356213 51356322 -97427150 + L2 LINE L2 2915 3024 -248 2244 123 0 0 chr11 51356322 51356623 -97426849 - AluSx SINE Alu -9 303 3 248 351 61 72 chr11 51356623 51356875 -97426597 + L2 LINE L2 3024 3272 0 1938 121 57 0 chr11 51356958 51357240 -97426232 + AluSc SINE Alu 3 300 -9 302 213 75 0 chr11 51358110 51358190 -97425282 + MIR SINE MIR 119 204 -58 474 294 76 30 chr11 51360281 51360478 -97422994 - MIR SINE MIR 0 262 57 310 406 47 5 chr11 51360831 51361023 -97422449 + MIR SINE MIR 7 206 -56 224 274 0 63 chr11 51361406 51361501 -97421971 + MIR SINE MIR 96 184 -78 4298 193 46 17 chr11 51362429 51363907 -97419565 - L1MA9 LINE L1 -4 7268 5755 2318 253 68 39 chr11 51363907 51365860 -97417612 - L1MA9 LINE L1 -4171 2936 934 881 256 23 5 chr11 51365884 51366171 -97417301 - L1M3c LINE L1 -5845 1192 42 2386 75 0 3 chr11 51366182 51366475 -97416997 - AluY SINE Alu -19 292 1 1730 219 31 4 chr11 51366475 51366926 -97416546 - L1M4 LINE L1 -814 5332 4870 526 198 38 0 chr11 51367002 51367108 -97416364 - MLT1A1 LTR MaLR 0 365 256 3265 54 0 0 chr11 51367113 51367518 -97415954 + L1PA6 LINE L1 5744 6148 -6 434 352 34 11 chr11 51367673 51367852 -97415620 - MIR SINE MIR -75 187 5 713 296 115 35 chr11 51368549 51368948 -97414524 + L2 LINE L2 2825 3255 -58 325 324 35 0 chr11 51369117 51369262 -97414210 - LTR67 LTR ERVL 0 557 408 1578 174 82 84 chr11 51369634 51370134 -97413338 - L1MA9 LINE L1 -38 6274 5776 337 221 0 0 chr11 51370154 51370231 -97413241 + L1MA9 LINE L1 6162 6238 -74 259 152 9 86 chr11 51370242 51370347 -97413125 + (TATAA)n Simple_repeat Simple_repeat 5 101 0 3332 185 15 48 chr11 51370378 51371305 -97412167 - L1MA9 LINE L1 -544 5768 4812 2191 118 3 3 chr11 51371305 51371611 -97411861 + AluSx SINE Alu 1 306 -6 3332 185 15 48 chr11 51371611 51371733 -97411739 - L1MA9 LINE L1 -1500 4812 4688 1721 190 11 0 chr11 51371733 51372056 -97411416 - AluSx SINE Alu 0 326 1 3332 185 15 48 chr11 51372056 51372309 -97411163 - L1MA9 LINE L1 -1624 4688 4517 356 227 53 0 chr11 51372319 51372394 -97411078 + 5S rRNA rRNA 1 79 -42 380 291 121 34 chr11 51372409 51372615 -97410857 - MIR SINE MIR -6 256 33 3791 175 33 25 chr11 51372783 51373092 -97410380 - L1MC1 LINE L1 -1 6612 6307 3304 76 0 2 chr11 51373092 51373539 -97409933 + L1PA8 LINE L1 5725 6170 -2 3791 175 33 25 chr11 51373539 51373996 -97409476 - L1MC1 LINE L1 -306 6307 5840 4098 199 58 70 chr11 51374011 51374327 -97409145 - L1MC1 LINE L1 -1349 5077 4759 2203 108 3 13 chr11 51374327 51374643 -97408829 - AluSp SINE Alu 0 313 1 4098 199 58 70 chr11 51374643 51375625 -97407847 - L1MC1 LINE L1 -1667 4759 3794 905 175 6 6 chr11 51375637 51375797 -97407675 + MLT1A1 LTR MaLR 1 160 -205 754 200 32 13 chr11 51375798 51375953 -97407519 - L1MC1 LINE L1 -5825 601 444 1491 185 19 88 chr11 51376081 51376513 -97406959 - L1MC1 LINE L1 -5995 431 30 187 426 9 9 chr11 51376545 51376660 -97406812 + L2 LINE L2 2768 2882 -432 244 313 27 94 chr11 51376812 51377036 -97406436 + L2 LINE L2 3105 3313 0 368 333 95 60 chr11 51378643 51379244 -97404228 - L2 LINE L2 -475 2839 2218 1309 251 18 70 chr11 51379369 51379767 -97403705 + MLT1B LTR MaLR 14 390 0 1673 199 11 6 chr11 51379769 51380131 -97403341 + MLT1B-int LTR MaLR 3 366 -1005 751 219 0 13 chr11 51431176 51431327 -97352145 - AluJb SINE Alu -44 268 120 7000 54 11 0 chr11 51431338 51432350 -97351122 - L1PA4 LINE L1 -11 6144 5129 5854 81 1 0 chr11 51432450 51433278 -97350194 + L1PA4 LINE L1 1348 2176 -3970 * 21020 54 8 0 chr11 51433275 51436701 -97346771 + L1PA4 LINE L1 2515 6153 -2 15024 33 3 2 chr11 51437092 51439347 -97344125 - L1P1 LINE L1 -419 5736 3477 1143 147 8 2 chr11 51439347 51444426 -97339046 - ALR/Alpha Satellite centromeric 0 5110 1 3730 90 4 8 chr11 51444426 51444915 -97338557 + SVA Other Other 898 1384 -2 1001 160 12 0 chr11 51444915 51445473 -97337999 - ALR/Alpha Satellite centromeric 0 564 1 4449 79 2 0 chr11 51445573 51446180 -97337292 - L1P LINE L1 -5538 608 1 1026 168 3 1 chr11 51446181 51447670 -97335802 - ALR/Alpha Satellite centromeric 0 1492 1 13349 36 2 1 chr11 51447770 51449477 -97333995 + L1P LINE L1 3505 5214 -932 1130 148 2 1 chr11 51449477 51454194 -97329278 - ALR/Alpha Satellite centromeric 0 4721 1 1113 135 3 1 chr11 51454205 51455489 -97327983 - ALR/Alpha Satellite centromeric 0 1286 1 1185 156 7 2 chr11 51455501 51457762 -97325710 - ALR/Alpha Satellite centromeric 0 2272 1 6970 59 0 1 chr11 51457763 51459344 -97324128 - L1PA4 LINE L1 -2 6153 4574 1189 138 6 1 chr11 51459444 51463854 -97319618 + ALR/Alpha Satellite centromeric 1 4431 0 36468 74 9 2 chr11 51463854 51469594 -97313878 - L1PA5 LINE L1 -4 6150 373 1058 176 4 2 chr11 51469595 51470769 -97312703 + ALR/Alpha Satellite centromeric 1 1176 -40 1163 167 5 2 chr11 51470869 51480288 -97303184 + ALR/Alpha Satellite centromeric 1 9441 -36 1446 93 9 0 chr11 51480389 51480615 -97302857 - L1P LINE L1 -2767 3379 3152 6835 65 1 6 chr11 51480616 51482151 -97301321 + L1PA4 LINE L1 4650 6155 0 1252 136 4 1 chr11 51482151 51483721 -97299751 + ALR/Alpha Satellite centromeric 1 1575 -70 32265 94 7 0 chr11 51483721 51488219 -97295253 + L1P LINE L1 24 4550 -1596 1316 131 4 0 chr11 51488365 51497016 -97286456 + ALR/Alpha Satellite centromeric 1 8679 -15 17273 50 2 33 chr11 51497116 51499484 -97283988 - L1P LINE L1 -1493 4653 2359 1013 174 8 1 chr11 51499485 51500520 -97282952 - ALR/Alpha Satellite centromeric -9 1042 1 11986 52 3 1 chr11 51500520 51502036 -97281436 - L1P LINE L1 -1253 4893 3375 4825 32 0 0 chr11 51502036 51502603 -97280869 + L1PA2 LINE L1 5579 6148 -7 1134 169 4 3 chr11 51502638 51510673 -97272799 + ALR/Alpha Satellite centromeric 1 8042 -63 1089 167 5 2 chr11 51510773 51519089 -97264383 - ALR/Alpha Satellite centromeric 0 8340 1 1071 156 2 1 chr11 51519104 51519816 -97263656 - ALR/Alpha Satellite centromeric 0 712 1 1037 169 3 3 chr11 51519922 51525438 -97258034 + ALR/Alpha Satellite centromeric 1 5513 0 980 166 0 0 chr11 51525545 51525998 -97257474 + ALR/Alpha Satellite centromeric 1 453 -9 895 175 6 0 chr11 51526012 51526178 -97257294 + ALR/Alpha Satellite centromeric 6 172 0 22578 72 8 9 chr11 51526178 51529163 -97254309 + L1P LINE L1 4 2986 -3160 998 171 6 6 chr11 51529183 51530894 -97252578 + ALR/Alpha Satellite centromeric 1 1710 -63 9420 89 2 5 chr11 51530894 51532172 -97251300 + L1P LINE L1 7 1281 -4865 1039 151 16 1 chr11 51532274 51533363 -97250109 - ALR/Alpha Satellite centromeric 0 1105 1 997 191 2 0 chr11 51533377 51534130 -97249342 - ALR/Alpha Satellite centromeric 0 754 1 1151 169 3 2 chr11 51534143 51540116 -97243356 - ALR/Alpha Satellite centromeric 0 5978 1 1254 147 5 1 chr11 51540127 51548406 -97235066 - ALR/Alpha Satellite centromeric 0 8312 1 1022 139 6 0 chr11 51548507 51548952 -97234520 + ALR/Alpha Satellite centromeric 1 447 -3 1166 148 4 3 chr11 51548963 51555276 -97228196 + ALR/Alpha Satellite centromeric 1 6317 -1 1223 143 9 1 chr11 51555319 51558246 -97225226 + ALR/Alpha Satellite centromeric 1 2952 0 23 0 0 0 chr11 51558246 51558269 -97225203 + AT_rich Low_complexity Low_complexity 1 23 0 1177 153 4 2 chr11 51558280 51558971 -97224501 + ALR/Alpha Satellite centromeric 1 690 -3578 443 35 0 0 chr11 51558971 51559029 -97224443 + L1PA4 LINE L1 6098 6155 0 1177 153 4 2 chr11 51559029 51562516 -97220956 + ALR/Alpha Satellite centromeric 690 4241 -27 1308 145 4 2 chr11 51562618 51581916 -97201556 + ALR/Alpha Satellite centromeric 1 19332 -7 9198 118 4 0 chr11 51582016 51583347 -97200125 - L1P LINE L1 -4810 1336 1 1100 163 3 1 chr11 51583351 51584888 -97198584 + ALR/Alpha Satellite centromeric 1 1539 -49 28623 37 1 0 chr11 51584888 51588489 -97194983 + L1P1 LINE L1 1872 5473 -682 6371 27 1 0 chr11 51588480 51589226 -97194246 + L1PA2 LINE L1 5405 6151 -4 * 1090 159 5 2 chr11 51589226 51593830 -97189642 + ALR/Alpha Satellite centromeric 1 4617 -13 30668 59 25 0 chr11 51593842 51598653 -97184819 - L1PA4 LINE L1 -3 6152 1225 1062 169 8 3 chr11 51598754 51601668 -97181804 - ALR/Alpha Satellite centromeric 0 2929 1 1319 117 2 2 chr11 51601680 51619142 -97164330 - ALR/Alpha Satellite centromeric 0 17454 1 1226 124 7 1 chr11 51619245 51621552 -97161920 + ALR/Alpha Satellite centromeric 1 2320 -38 1214 122 2 0 chr11 51621652 51625230 -97158242 + ALR/Alpha Satellite centromeric 1 3586 -58 272 335 100 62 chr11 51626052 51626523 -97156949 - L2 LINE L2 -18 3295 2807 281 286 14 0 chr11 51627031 51627101 -97156371 + FRAM/FAM SINE Alu 9 79 -87 1315 116 3 0 chr11 51627207 51632427 -97151045 + ALR/Alpha Satellite centromeric 1 5233 -21 27 103 0 0 chr11 51632787 51632884 -97150588 + AT_rich Low_complexity Low_complexity 1 97 0 1641 113 4 0 chr11 51633452 51633681 -97149791 + AluSp SINE Alu 56 285 -28 1250 112 1 1 chr11 51634050 51639359 -97144113 + ALR/Alpha Satellite centromeric 1 5691 -83 3223 29 0 0 chr11 51639359 51639739 -97143733 - L1PA2 LINE L1 -6 6149 5770 23 0 0 0 chr11 51639744 51639767 -97143705 + AT_rich Low_complexity Low_complexity 1 23 0 37349 51 53 1 chr11 51639767 51645611 -97137861 - L1HS LINE L1 -2 6153 1 5757 27 8 0 chr11 51645609 51646732 -97136740 - L1P1 LINE L1 -374 5781 4648 * 3691 38 0 0 chr11 51646729 51647200 -97136272 + L1P1 LINE L1 4183 4653 -1493 * 1281 113 3 0 chr11 51647200 51655910 -97127562 + ALR/Alpha Satellite centromeric 1 8731 0 3805 37 0 0 chr11 51655910 51656392 -97127080 - L1PA3 LINE L1 -403 5752 5271 1774 40 0 0 chr11 51656390 51656617 -97126855 + L1PA3 LINE L1 5746 5972 -183 * 1265 93 2 0 chr11 51656720 51657560 -97125912 - ALR/Alpha Satellite centromeric 0 841 1 4367 40 3 0 chr11 51657560 51658156 -97125316 - L1PA3 LINE L1 -2853 3293 2696 16672 45 5 2 chr11 51658157 51661007 -97122465 + L1PA3 LINE L1 3291 6145 -10 7070 51 5 2 chr11 51660117 51661007 -97122465 + L1PA3 LINE L1 5254 6171 0 202 39 0 0 chr11 51661007 51661033 -97122439 + (TAAA)n Simple_repeat Simple_repeat 3 124 0 1355 114 3 3 chr11 51661035 51672105 -97111367 - ALR/Alpha Satellite centromeric 0 11070 1 566 294 0 0 chr11 51672683 51672809 -97110663 + FRAM SINE Alu 1 118 -58 1145 148 6 1 chr11 51674072 51676934 -97106538 - ALR/Alpha Satellite centromeric 0 2875 1 34701 63 6 29 chr11 51676934 51681694 -97101778 - L1P LINE L1 -1491 4655 9 1223 131 2 1 chr11 51681711 51683782 -97099690 + ALR/Alpha Satellite centromeric 1 2073 -4 2228 174 105 10 chr11 51683882 51684881 -97098591 - SATR1 Satellite Satellite -1 1093 1 21 71 0 0 chr11 51684881 51684923 -97098549 + AT_rich Low_complexity Low_complexity 1 42 0 411 217 6 42 chr11 51684966 51685132 -97098340 + (TTA)n Simple_repeat Simple_repeat 2 161 0 358 115 85 0 chr11 51685670 51685835 -97097637 + (TA)n Simple_repeat Simple_repeat 2 180 0 205 171 0 0 chr11 51686298 51686333 -97097139 + (CATATA)n Simple_repeat Simple_repeat 1 35 0 25 83 0 0 chr11 51688806 51688866 -97094606 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr11 51689876 51689897 -97093575 + AT_rich Low_complexity Low_complexity 1 21 0 341 56 28 28 chr11 51690061 51690132 -97093340 + (TTTA)n Simple_repeat Simple_repeat 2 72 0 206 426 22 0 chr11 51691763 51691899 -97091573 + L2 LINE L2 2850 2988 -325 232 174 14 14 chr11 51691958 51692027 -97091445 + (TA)n Simple_repeat Simple_repeat 2 70 0 193 269 18 102 chr11 51692104 51692271 -97091201 + L2 LINE L2 3004 3156 -157 945 220 40 13 chr11 51694591 51694818 -97088654 + MLT2B3 LTR ERVL 8 240 -314 370 320 40 0 chr11 51694807 51694932 -97088540 + MLT2B3 LTR ERVL 379 508 -46 * 1004 203 87 0 chr11 51694942 51695149 -97088323 - Tigger3(Golem) DNA MER2_type -3 3026 2802 339 25 0 0 chr11 51695150 51695190 -97088282 + (TA)n Simple_repeat Simple_repeat 1 40 0 329 67 22 0 chr11 51695197 51695242 -97088230 + MLT2C1 LTR ERVL 352 397 0 528 302 0 0 chr11 51696425 51696551 -97086921 - FRAM SINE Alu -58 118 1 317 312 231 7 chr11 51697210 51697492 -97085980 - L1M4 LINE L1 -892 5254 4910 25 31 0 0 chr11 51697805 51697837 -97085635 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr11 51698573 51698595 -97084877 + AT_rich Low_complexity Low_complexity 1 22 0 249 33 0 0 chr11 51700435 51700465 -97083007 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 294 405 26 0 chr11 51702045 51702198 -97081274 + L2 LINE L2 2808 2964 -349 204 158 0 0 chr11 51702205 51702243 -97081229 + (CA)n Simple_repeat Simple_repeat 1 38 0 330 302 57 91 chr11 51702271 51702602 -97080870 + L2 LINE L2 2979 3298 -15 571 146 0 0 chr11 51704534 51704623 -97078849 + L1PA8 LINE L1 6075 6163 -9 1074 212 21 21 chr11 51704865 51705106 -97078366 + MLT2B3 LTR ERVL 1 241 -313 511 306 0 0 chr11 51705102 51705236 -97078236 + MLT2B3 LTR ERVL 375 508 -46 * 1752 152 31 19 chr11 51705243 51705295 -97078177 - MER7A DNA MER2_type -2693 345 295 1835 157 0 38 chr11 51705295 51705608 -97077864 - AluSx SINE Alu -11 301 1 1752 152 31 19 chr11 51705608 51705877 -97077595 - MER7A DNA MER2_type -2743 295 22 267 203 40 14 chr11 51705878 51705952 -97077520 + MLT2B1 LTR ERVL 445 520 0 218 204 0 23 chr11 51706041 51706085 -97077387 - L3b LINE CR1 -11 1572 1530 1259 201 8 19 chr11 51707150 51707409 -97076063 - AluJo SINE Alu -46 266 11 351 0 0 0 chr11 51707982 51708021 -97075451 + (TA)n Simple_repeat Simple_repeat 2 40 0 2676 207 104 25 chr11 51708066 51708756 -97074716 + Tigger7 DNA MER2_type 24 768 -1719 567 135 21 10 chr11 51708758 51708854 -97074618 + Tigger7 DNA MER2_type 2218 2314 -273 202 250 21 0 chr11 51709096 51709144 -97074328 + L2 LINE L2 2601 2649 -665 1842 102 4 4 chr11 51709596 51709850 -97073622 + AluSq SINE Alu 1 254 -59 329 146 0 0 chr11 51709952 51710007 -97073465 + AluSq SINE Alu 245 299 -1 1104 236 4 12 chr11 51710618 51710860 -97072612 - AluJo SINE Alu -16 296 57 342 183 0 159 chr11 51712009 51712044 -97071428 + MER46A DNA MER2_type 1 40 -196 376 102 0 0 chr11 51712044 51712103 -97071369 + L1MA1 LINE L1 6238 6296 -6 342 183 0 159 chr11 51712103 51712193 -97071279 + MER46A DNA MER2_type 40 106 -130 567 191 0 0 chr11 51712260 51712370 -97071102 + MER46A DNA MER2_type 126 235 -1 2111 175 150 17 chr11 51713791 51714323 -97069149 + LTR26 LTR ERV1 1 603 0 426 262 18 30 chr11 51714323 51714486 -97068986 + MER115 DNA AcHobo 500 660 -33 2707 32 0 6 chr11 51714790 51715103 -97068369 - AluY SINE Alu 0 311 1 494 271 113 18 chr11 51715573 51715971 -97067501 + L1MEc LINE L1 661 1096 -5300 230 48 24 24 chr11 51716056 51716098 -97067374 + MADE1 DNA Mariner 1 42 -38 1882 146 16 3 chr11 51716098 51716273 -97067199 - AluSx SINE Alu 0 312 130 3374 13 0 0 chr11 51716273 51716659 -97066813 + L1PA2 LINE L1 5769 6154 -1 1882 146 16 3 chr11 51716659 51716791 -97066681 - AluSx SINE Alu -182 130 1 246 133 0 0 chr11 51716796 51716841 -97066631 + MADE1 DNA Mariner 36 80 0 220 219 11 0 chr11 51716863 51716932 -97066540 + GA-rich Low_complexity Low_complexity 1 69 0 410 281 40 71 chr11 51716932 51717156 -97066316 + L1MEc LINE L1 1465 1681 -4715 375 60 0 0 chr11 51717171 51717221 -97066251 + (CA)n Simple_repeat Simple_repeat 2 51 0 21 0 0 0 chr11 51717893 51717914 -97065558 + AT_rich Low_complexity Low_complexity 1 21 0 1247 138 54 19 chr11 51718360 51718621 -97064851 - L1MA5A LINE L1 0 6297 6028 25 0 0 0 chr11 51718649 51718674 -97064798 + AT_rich Low_complexity Low_complexity 1 25 0 370 176 11 11 chr11 51718678 51718769 -97064703 - L1MA5A LINE L1 -275 6022 5932 4305 74 23 21 chr11 51719377 51719712 -97063760 - L1PA7 LINE L1 0 6154 5821 2094 104 7 26 chr11 51719712 51720020 -97063452 - AluY SINE Alu -9 302 1 4305 74 23 21 chr11 51720020 51720426 -97063046 - L1PA7 LINE L1 -333 5821 5340 1400 162 77 15 chr11 51721540 51721836 -97061636 + AluSx SINE Alu 1 313 0 374 280 15 40 chr11 51722087 51722287 -97061185 + L1MB7 LINE L1 5897 6091 -93 1916 127 48 0 chr11 51723379 51723670 -97059802 - AluSx SINE Alu -7 305 1 402 147 0 0 chr11 51725050 51725118 -97058354 + Tigger2 DNA MER2_type 2 69 -2649 * 1809 193 45 32 chr11 51725102 51725542 -97057930 + Tigger2 DNA MER2_type 2267 2712 -6 201 74 0 0 chr11 51728549 51728576 -97054896 + (TC)n Simple_repeat Simple_repeat 2 28 0 2255 224 5 27 chr11 51729222 51729843 -97053629 + L1 LINE L1 4739 5345 -801 237 325 12 0 chr11 51730022 51730105 -97053367 + 7SLRNA srpRNA srpRNA 1 84 -236 263 133 22 0 chr11 51730248 51730293 -97053179 - MLT2C1 LTR ERVL 0 397 352 573 15 0 0 chr11 51730300 51730366 -97053106 + (TA)n Simple_repeat Simple_repeat 1 66 0 935 203 87 0 chr11 51730367 51730574 -97052898 + Tigger3(Golem) DNA MER2_type 2802 3026 -3 324 336 37 0 chr11 51730584 51730718 -97052754 - MLT2B3 LTR ERVL -46 508 370 * 1000 196 39 13 chr11 51730698 51730928 -97052544 - MLT2B3 LTR ERVL -314 240 5 237 342 58 64 chr11 51733108 51733421 -97050051 - L2 LINE L2 0 3313 3003 469 246 0 29 chr11 51733458 51733633 -97049839 + (TA)n Simple_repeat Simple_repeat 2 171 0 231 400 25 0 chr11 51733633 51733753 -97049719 - L2 LINE L2 -341 2973 2851 22 0 0 0 chr11 51735142 51735164 -97048308 + AT_rich Low_complexity Low_complexity 1 22 0 308 103 17 0 chr11 51735396 51735454 -97048018 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 21 0 0 0 chr11 51735617 51735638 -97047834 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr11 51737299 51737322 -97046150 + AT_rich Low_complexity Low_complexity 1 23 0 234 242 0 0 chr11 51738412 51738478 -97044994 + L1ME3 LINE L1 4915 4980 -1166 463 288 104 15 chr11 51738542 51739383 -97044089 + L1ME3 LINE L1 5083 6009 -153 210 71 0 0 chr11 51739467 51739495 -97043977 + (TA)n Simple_repeat Simple_repeat 2 29 0 25 31 0 0 chr11 51739561 51739593 -97043879 + AT_rich Low_complexity Low_complexity 1 32 0 2879 74 5 8 chr11 51739615 51740008 -97043464 - L1PA7 LINE L1 -3 6151 5760 528 286 87 39 chr11 51740437 51740769 -97042703 + L1MCc LINE L1 1079 1426 -4997 8145 60 8 212 chr11 51740771 51742449 -97041023 - SVA Other Other 0 1386 52 435 19 0 0 chr11 51742449 51742501 -97040971 + (GGGAGA)n Simple_repeat Simple_repeat 1 52 0 371 309 44 75 chr11 51742545 51742839 -97040633 - L1MEc LINE L1 -4678 1828 1422 211 196 39 0 chr11 51743330 51743381 -97040091 + (TA)n Simple_repeat Simple_repeat 2 54 0 665 252 0 26 chr11 51743521 51743672 -97039800 + AluJo SINE Alu 127 273 -39 349 129 71 7 chr11 51743672 51743812 -97039660 + (TA)n Simple_repeat Simple_repeat 1 149 0 497 167 10 0 chr11 51745284 51745386 -97038086 + T-rich Low_complexity Low_complexity 3 105 0 208 147 0 0 chr11 51745386 51745420 -97038052 + (TTTC)n Simple_repeat Simple_repeat 4 37 0 635 203 70 0 chr11 51745420 51745548 -97037924 - AluSg/x SINE Alu -39 273 137 1149 35 35 0 chr11 51747785 51747956 -97035516 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 218 105 26 0 chr11 51747966 51748004 -97035468 + CT-rich Low_complexity Low_complexity 2 40 0 1636 138 8 27 chr11 51748015 51748275 -97035197 - AluSq SINE Alu -58 255 1 2088 95 7 0 chr11 51754111 51754394 -97029078 - AluSp SINE Alu -28 285 1 734 227 221 49 chr11 51754875 51755979 -97027493 - SATR1 Satellite Satellite -15 1294 1 2238 171 122 23 chr11 51756004 51757555 -97025917 - SATR1 Satellite Satellite -1 1704 1 25 31 0 0 chr11 51757830 51757862 -97025610 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr11 51758599 51758621 -97024851 + AT_rich Low_complexity Low_complexity 1 22 0 357 75 0 0 chr11 51760447 51760500 -97022972 + (TTTA)n Simple_repeat Simple_repeat 1 53 0 970 279 80 11 chr11 51762571 51762948 -97020524 + L1MA9 LINE L1 5872 6274 -38 1370 209 14 14 chr11 51763104 51763391 -97020081 + AluJo SINE Alu 1 287 -25 786 156 39 0 chr11 51763958 51764086 -97019386 + AluSq SINE Alu 24 156 -157 23 54 0 0 chr11 51764403 51764440 -97019032 + AT_rich Low_complexity Low_complexity 1 37 0 435 243 5 129 chr11 51765215 51765425 -97018047 - MER5A DNA MER1_type 0 189 6 2147 95 3 0 chr11 51766873 51767157 -97016315 + AluSp SINE Alu 1 285 -28 1563 171 0 25 chr11 51772986 51773266 -97010206 + AluSx SINE Alu 1 273 -39 206 125 0 25 chr11 51773266 51773306 -97010166 + (GA)n Simple_repeat Simple_repeat 1 39 0 1334 17 23 0 chr11 51773314 51773487 -97009985 + (GAAA)n Simple_repeat Simple_repeat 1 177 0 685 285 0 0 chr11 51775487 51775624 -97007848 + FRAM SINE Alu 2 138 -38 530 118 66 0 chr11 51775636 51775788 -97007684 + (TA)n Simple_repeat Simple_repeat 1 162 0 935 73 15 0 chr11 51777271 51777407 -97006065 + (TTTC)n Simple_repeat Simple_repeat 3 140 0 1318 179 77 0 chr11 51777407 51777653 -97005819 - AluSg SINE Alu -40 270 6 1386 112 1 0 chr11 51779113 51787710 -96995762 - ALR/Alpha Satellite centromeric 0 8606 1 488 291 97 34 chr11 51838053 51838290 -96945182 + MIR SINE MIR 8 259 -3 21 0 0 0 chr11 51838290 51838311 -96945161 + AT_rich Low_complexity Low_complexity 1 21 0 1925 114 0 4 chr11 51838633 51838895 -96944577 + AluSg SINE Alu 1 261 -49 333 345 55 21 chr11 51839002 51839292 -96944180 - L1M4 LINE L1 -2657 3489 3190 23 33 0 0 chr11 51839358 51839388 -96944084 + AT_rich Low_complexity Low_complexity 1 30 0 350 237 88 18 chr11 51842148 51842262 -96941210 - L2 LINE L2 0 3313 3192 231 318 0 59 chr11 51842482 51842567 -96940905 - MIR SINE MIR -176 86 7 1704 191 0 3 chr11 51842907 51843195 -96940277 - AluJb SINE Alu -17 295 9 429 222 161 78 chr11 51843503 51843532 -96939940 - MER58C DNA MER1_type -2225 195 170 2100 112 3 7 chr11 51843532 51843818 -96939654 - AluSx SINE Alu -25 287 3 429 222 161 78 chr11 51843818 51843968 -96939504 - MER58C DNA MER1_type -2250 170 1 354 286 64 30 chr11 51844332 51844598 -96938874 - L1ME4a LINE L1 -273 5848 5574 5748 222 36 16 chr11 51845062 51846560 -96936912 + L1 LINE L1 3479 5006 -1140 198 103 0 0 chr11 51847308 51847337 -96936135 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1220 119 0 0 chr11 51847573 51847741 -96935731 + AluSg/x SINE Alu 129 296 -16 358 247 38 38 chr11 51849142 51849300 -96934172 + L1ME4a LINE L1 5725 5882 -239 277 268 12 12 chr11 51849575 51849657 -96933815 - MLT1I LTR MaLR -6 403 322 258 231 106 75 chr11 51849813 51849973 -96933499 - MLT1J2 LTR MaLR -285 165 1 223 316 45 51 chr11 51850328 51850505 -96932967 + L2 LINE L2 2435 2610 -704 730 168 41 77 chr11 51850516 51850712 -96932760 + MLT1A1 LTR MaLR 13 201 -164 2030 144 29 3 chr11 51850722 51851068 -96932404 - THE1A LTR MaLR 0 355 1 384 130 0 14 chr11 51851068 51851137 -96932335 - THE1A-int LTR MaLR 0 1580 1513 297 286 10 58 chr11 51851750 51851915 -96931557 - MIR3 SINE MIR -11 197 72 1002 313 34 43 chr11 51853242 51853779 -96929693 + L2 LINE L2 2182 2713 -601 1545 207 7 58 chr11 51853779 51854189 -96929283 - L1 LINE L1 -1240 4906 4518 467 313 72 23 chr11 51854199 51854461 -96929011 + L2 LINE L2 2841 3115 -198 244 211 26 26 chr11 51856475 51856589 -96926883 + CT-rich Low_complexity Low_complexity 3 116 0 28 29 0 0 chr11 51857450 51857485 -96925987 + AT_rich Low_complexity Low_complexity 1 35 0 226 261 54 0 chr11 51857830 51857922 -96925550 + GA-rich Low_complexity Low_complexity 3 99 0 808 192 0 0 chr11 51858381 51858511 -96924961 - FRAM SINE Alu -38 138 9 189 244 81 105 chr11 51859178 51859264 -96924208 - L3b LINE CR1 -232 1351 1268 183 316 53 63 chr11 51860254 51860349 -96923123 + MIR SINE MIR 44 137 -71 2222 97 3 10 chr11 51860682 51860981 -96922491 + AluSg SINE Alu 1 297 -13 366 390 22 7 chr11 51861044 51861180 -96922292 + L3 LINE CR1 1427 1564 -13 350 294 0 20 chr11 51861433 51861535 -96921937 - MIR3 SINE MIR -26 182 83 2099 136 3 0 chr11 51862004 51862313 -96921159 - AluSx SINE Alu -2 310 1 1453 179 144 0 chr11 51862693 51863006 -96920466 + MER46B DNA MER2_type 1 233 -3 317 371 22 17 chr11 51863019 51863197 -96920275 - MIR3 SINE MIR -15 193 15 216 167 24 0 chr11 51863325 51863367 -96920105 + MIR SINE MIR 108 150 -112 217 277 46 0 chr11 51863447 51863512 -96919960 + MIR SINE MIR 81 148 -114 3778 37 0 0 chr11 51863810 51864298 -96919174 - L1P LINE L1 -2681 3465 2978 10113 47 5 1 chr11 51864298 51865635 -96917837 + L1P LINE L1 3478 4820 -1326 252 0 0 0 chr11 51865857 51865885 -96917587 + (T)n Simple_repeat Simple_repeat 1 28 0 206 146 229 0 chr11 51867360 51867408 -96916064 - MIR SINE MIR -115 147 89 740 86 17 26 chr11 51867429 51867546 -96915926 - AluSp/q SINE Alu -2 311 196 2173 115 0 3 chr11 51868208 51868513 -96914959 - AluSx SINE Alu -8 304 1 2066 134 0 13 chr11 51869200 51869499 -96913973 + AluSx SINE Alu 1 295 -17 282 331 89 13 chr11 51869579 51869736 -96913736 + MIR SINE MIR 18 186 -76 1047 165 17 0 chr11 51869737 51869913 -96913559 - FRAM SINE Alu 0 176 1 196 233 178 33 chr11 51870176 51870266 -96913206 + MIR SINE MIR 150 252 -10 414 221 19 135 chr11 51871727 51871935 -96911537 + MER5A DNA MER1_type 6 189 0 276 30 0 0 chr11 51873104 51873137 -96910335 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 580 198 0 36 chr11 51873140 51873251 -96910221 - AluSg/x SINE Alu -29 281 175 561 248 108 32 chr11 51875442 51875756 -96907716 + L1MB7 LINE L1 5841 6178 0 1129 209 57 45 chr11 51881571 51881809 -96901663 + MER2 DNA MER2_type 2 247 -97 2283 100 0 7 chr11 51881809 51882110 -96901362 + AluSc SINE Alu 1 299 -10 1129 209 57 45 chr11 51882110 51882206 -96901266 + MER2 DNA MER2_type 247 340 -4 21 57 0 0 chr11 51882629 51882664 -96900808 + AT_rich Low_complexity Low_complexity 1 35 0 1758 168 6 19 chr11 51882952 51882985 -96900487 - AluSx SINE Alu -1 311 279 198 0 0 0 chr11 51882985 51883007 -96900465 + (TTG)n Simple_repeat Simple_repeat 1 22 0 1758 168 6 19 chr11 51883007 51883288 -96900184 - AluSx SINE Alu -33 279 1 2052 125 0 3 chr11 51883858 51884155 -96899317 + AluSg SINE Alu 1 296 -14 1031 187 44 88 chr11 51884307 51884671 -96898801 - Tigger2a DNA MER2_type -84 350 3 198 351 81 27 chr11 51885233 51885381 -96898091 - L2 LINE L2 -22 3291 3136 1170 230 31 14 chr11 51885385 51885672 -96897800 + AluJb SINE Alu 6 297 -15 201 348 21 70 chr11 51885675 51885761 -96897711 - L2 LINE L2 -159 3154 3080 2463 71 0 10 chr11 51885761 51886072 -96897400 - AluY SINE Alu -3 308 1 201 348 21 70 chr11 51886072 51886172 -96897300 - L2 LINE L2 -233 3080 2977 1763 155 11 7 chr11 51887437 51887749 -96895723 - AluSx SINE Alu 0 317 5 247 196 18 0 chr11 51887940 51887996 -96895476 + (TG)n Simple_repeat Simple_repeat 2 58 0 580 262 27 0 chr11 51890528 51890677 -96892795 - Tigger3(Golem) DNA MER2_type -1 3028 2876 1027 117 0 0 chr11 51890857 51891002 -96892470 + AluSc SINE Alu 155 299 -10 739 213 0 0 chr11 51892083 51892224 -96891248 - FLAM_C SINE Alu 0 143 3 381 239 0 11 chr11 51892237 51892325 -96891147 - AluS SINE Alu -216 87 1 1684 169 0 0 chr11 51893541 51893801 -96889671 + AluSx SINE Alu 39 298 -14 2282 109 10 0 chr11 51893802 51894106 -96889366 + AluSg SINE Alu 2 308 -2 2013 93 75 0 chr11 51894473 51894751 -96888721 + AluSx SINE Alu 1 299 -13 1339 196 9 86 chr11 51895854 51895974 -96887498 + AluJo SINE Alu 1 129 -183 2134 125 0 22 chr11 51895974 51896293 -96887179 - AluSx SINE Alu 0 312 1 1339 196 9 86 chr11 51896293 51896498 -96886974 + AluJo SINE Alu 129 301 -11 273 319 0 0 chr11 51896622 51896691 -96886781 - MER5A DNA MER1_type -6 183 115 21 71 0 0 chr11 51896824 51896866 -96886606 + AT_rich Low_complexity Low_complexity 1 42 0 28 95 0 0 chr11 51896953 51897037 -96886435 + AT_rich Low_complexity Low_complexity 1 84 0 394 196 0 21 chr11 51897160 51897257 -96886215 + L1MA6 LINE L1 6204 6298 -2 35 41 0 0 chr11 51898371 51898420 -96885052 + AT_rich Low_complexity Low_complexity 1 49 0 212 0 0 35 chr11 51898455 51898484 -96884988 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 2123 116 3 0 chr11 51898486 51898770 -96884702 - AluSc SINE Alu -24 285 1 1533 181 35 31 chr11 51899009 51899297 -96884175 - AluJb SINE Alu -23 289 1 841 127 34 7 chr11 51899322 51899589 -96883883 + CT-rich Low_complexity Low_complexity 1 274 0 718 167 23 23 chr11 51899592 51899724 -96883748 - FLAM_C SINE Alu -1 132 1 1062 255 73 60 chr11 51899825 51900276 -96883196 - MLT1C LTR MaLR -2 465 9 30 0 0 0 chr11 51900496 51900526 -96882946 + AT_rich Low_complexity Low_complexity 1 30 0 210 71 0 0 chr11 51901418 51901446 -96882026 + (A)n Simple_repeat Simple_repeat 1 28 0 1929 140 0 11 chr11 51901659 51901974 -96881498 + AluSq SINE Alu 3 314 0 195 100 0 0 chr11 51903879 51903909 -96879563 + (T)n Simple_repeat Simple_repeat 1 30 0 23 114 0 0 chr11 51905161 51905275 -96878197 + AT_rich Low_complexity Low_complexity 1 114 0 875 220 121 66 chr11 51905375 51905707 -96877765 - MLT2B1 LTR ERVL -58 462 113 2524 47 0 10 chr11 51905803 51906103 -96877369 - AluY SINE Alu -14 297 1 1986 153 0 0 chr11 51906596 51906899 -96876573 + AluSx SINE Alu 1 303 0 22 35 0 0 chr11 51907082 51907111 -96876361 + AT_rich Low_complexity Low_complexity 1 29 0 242 234 0 13 chr11 51907230 51907307 -96876165 + (TA)n Simple_repeat Simple_repeat 1 76 0 187 386 26 39 chr11 51907370 51907523 -96875949 - L2 LINE L2 -225 3047 2897 1626 176 3 3 chr11 51908788 51909078 -96874394 + AluSx SINE Alu 1 290 -22 298 245 40 13 chr11 51909105 51909256 -96874216 + (TA)n Simple_repeat Simple_repeat 2 156 0 27 0 0 0 chr11 51910163 51910190 -96873282 + AT_rich Low_complexity Low_complexity 1 27 0 205 108 54 0 chr11 51911024 51911061 -96872411 + GA-rich Low_complexity Low_complexity 2 40 0 23 54 0 0 chr11 51912634 51912671 -96870801 + AT_rich Low_complexity Low_complexity 1 37 0 273 411 74 23 chr11 51913807 51914116 -96869356 + L2 LINE L2 2948 3272 0 1650 179 3 37 chr11 51914624 51914975 -96868497 + MER2 DNA MER2_type 7 345 0 1563 200 9 19 chr11 51915372 51915687 -96867785 - AluJb SINE Alu 0 312 1 21 36 0 0 chr11 51915842 51915870 -96867602 + AT_rich Low_complexity Low_complexity 1 28 0 324 277 0 0 chr11 51915962 51916027 -96867445 - FLAM_A SINE Alu -67 65 1 594 292 61 59 chr11 51916220 51916611 -96866861 + L1M4b LINE L1 545 936 -5923 521 223 8 0 chr11 51917192 51917322 -96866150 + (TA)n Simple_repeat Simple_repeat 2 132 0 639 78 0 0 chr11 51917399 51917489 -96865983 + (TA)n Simple_repeat Simple_repeat 2 91 0 824 113 28 14 chr11 51917556 51917697 -96865775 - L1PA16 LINE L1 -3 6163 6021 300 272 174 57 chr11 51923110 51923426 -96860046 - L1M2 LINE L1 -5674 1175 823 2478 163 23 0 chr11 51923479 51923915 -96859557 - L1PA16 LINE L1 -108 6058 5613 307 93 0 0 chr11 51924055 51924098 -96859374 + MLT2F LTR ERVL 621 663 0 10425 15 0 0 chr11 51924828 51926813 -96856659 - L1HS LINE L1 0 6155 4171 2001 170 30 16 chr11 51927039 51927404 -96856068 + L1PA15-16 LINE L1 1235 1604 -5245 284 250 0 0 chr11 51927403 51927475 -96855997 + L1 LINE L1 4847 4918 -1228 * 1680 167 68 0 chr11 51927480 51927761 -96855711 + MER1B DNA MER1_type 40 339 0 243 233 58 29 chr11 51927813 51927916 -96855556 + L1PA15-16 LINE L1 1621 1726 -5123 249 291 0 0 chr11 51928440 51928519 -96854953 - L1MC4 LINE L1 -1339 6703 6625 192 77 0 0 chr11 51929555 51929581 -96853891 + (A)n Simple_repeat Simple_repeat 1 26 0 22 35 0 0 chr11 51930937 51930966 -96852506 + AT_rich Low_complexity Low_complexity 1 29 0 1739 143 8 15 chr11 51932134 51932421 -96851051 - AluSx SINE Alu 0 304 20 516 274 104 27 chr11 51932524 51932783 -96850689 + L1ME3A LINE L1 5384 5662 -500 684 171 0 0 chr11 51932795 51932900 -96850572 - FLAM_C SINE Alu -18 125 21 444 284 29 42 chr11 51932900 51933139 -96850333 + L1ME3A LINE L1 5660 5895 -275 348 282 0 0 chr11 51933478 51933556 -96849916 + L1MCc LINE L1 823 900 -5523 320 191 12 0 chr11 51933744 51933828 -96849644 + (TA)n Simple_repeat Simple_repeat 1 85 0 314 335 48 40 chr11 51933853 51934250 -96849222 - L1 LINE L1 -3600 2546 2147 1952 277 40 28 chr11 51934285 51935082 -96848390 + L1MB7 LINE L1 5368 6174 -10 1832 250 59 29 chr11 51935093 51935809 -96847663 + L1ME LINE L1 4656 5415 -751 1751 176 7 3 chr11 51935809 51936104 -96847368 + AluJo SINE Alu 1 296 -16 1832 250 59 29 chr11 51936104 51936524 -96846948 + L1ME LINE L1 5415 5821 -345 1207 222 48 23 chr11 51936610 51937002 -96846470 + L1P LINE L1 2059 2460 -3686 361 253 71 51 chr11 51938307 51938501 -96844971 + MER63 DNA MER1_type 11 1059 -1 33 43 0 0 chr11 51938762 51938809 -96844663 + AT_rich Low_complexity Low_complexity 1 47 0 266 88 0 0 chr11 51938878 51938912 -96844560 - U2 snRNA snRNA -154 34 1 213 121 0 0 chr11 51941577 51941610 -96841862 + (TTCC)n Simple_repeat Simple_repeat 1 33 0 354 238 33 33 chr11 51941968 51942119 -96841353 + (TCTCTG)n Simple_repeat Simple_repeat 3 153 0 22 0 0 0 chr11 51942123 51942145 -96841327 + AT_rich Low_complexity Low_complexity 1 22 0 898 200 0 0 chr11 51942145 51942295 -96841177 - FRAM SINE Alu -28 148 1 2391 64 0 17 chr11 51942304 51942600 -96840872 - AluSc SINE Alu -15 294 4 352 299 21 43 chr11 51943103 51943290 -96840182 + L2 LINE L2 3107 3289 -24 24 0 0 0 chr11 51944455 51944479 -96838993 + AT_rich Low_complexity Low_complexity 1 24 0 307 262 48 39 chr11 51944663 51944766 -96838706 + L2 LINE L2 3176 3279 -34 516 307 94 35 chr11 51945585 51945927 -96837545 + MLT1L LTR MaLR 109 470 -145 424 221 76 19 chr11 51945959 51946117 -96837355 + L1MC4 LINE L1 7125 7291 -751 364 248 17 34 chr11 51946196 51946313 -96837159 + L1MC4 LINE L1 7436 7550 -492 360 311 47 91 chr11 51946614 51946962 -96836510 + L1MCb LINE L1 78 411 -5634 3110 99 20 2 chr11 51946962 51947408 -96836064 + L1PA11 LINE L1 5721 6174 0 360 311 47 91 chr11 51947408 51947422 -96836050 + L1MCb LINE L1 411 424 -5621 585 264 37 6 chr11 51948377 51948540 -96834932 - MER5A DNA MER1_type -21 168 1 1605 197 29 24 chr11 51948930 51949346 -96834126 + Charlie1b DNA MER1_type 59 476 -47 276 216 65 72 chr11 51949349 51949488 -96833984 - L1MB7 LINE L1 -12 6172 6035 2828 53 3 0 chr11 51949506 51949862 -96833610 - L1PA5 LINE L1 -8 6146 5790 1456 214 4 0 chr11 51950007 51950283 -96833189 - AluJb SINE Alu -35 277 1 326 237 172 0 chr11 51950283 51950409 -96833063 - L1ME1 LINE L1 -244 5922 5811 835 82 0 16 chr11 51950418 51950540 -96832932 - L1PA16 LINE L1 -1 6165 6046 245 339 70 86 chr11 51950702 51951142 -96832330 + L2 LINE L2 1816 2248 -1066 1659 188 24 95 chr11 51951212 51951664 -96831808 + LTR54 LTR ERV1 1 420 -90 233 26 0 0 chr11 51951673 51951712 -96831760 - L1PA2 LINE L1 -2 6153 6115 418 202 29 10 chr11 51951717 51951821 -96831651 + LTR54 LTR ERV1 405 510 0 2251 72 4 0 chr11 51951862 51952166 -96831306 - AluY SINE Alu 0 305 1 204 284 114 11 chr11 51952286 51952374 -96831098 + L2 LINE L2 2442 2538 -776 404 273 121 52 chr11 51952500 51952701 -96830771 + MLT2B2 LTR ERVL 186 402 -118 390 139 0 0 chr11 51952743 51952815 -96830657 + (CA)n Simple_repeat Simple_repeat 1 72 0 233 175 0 0 chr11 51952818 51952858 -96830614 + MLT2D LTR ERVL 374 413 -1 23 0 0 0 chr11 51953108 51953131 -96830341 + AT_rich Low_complexity Low_complexity 1 23 0 220 333 0 0 chr11 51954174 51954237 -96829235 + GA-rich Low_complexity Low_complexity 4 66 0 216 86 0 0 chr11 51955234 51955269 -96828203 + (T)n Simple_repeat Simple_repeat 1 35 0 21 57 0 0 chr11 51956495 51956530 -96826942 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr11 51956911 51956939 -96826533 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr11 51957063 51957086 -96826386 + AT_rich Low_complexity Low_complexity 1 23 0 243 0 0 0 chr11 51957438 51957465 -96826007 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1223 254 64 50 chr11 51957517 51957973 -96825499 + MLT1C LTR MaLR 6 467 0 25 51 0 0 chr11 51958130 51958169 -96825303 + AT_rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr11 51958203 51958228 -96825244 + AT_rich Low_complexity Low_complexity 1 25 0 466 300 115 65 chr11 51958446 51958846 -96824626 + HAL1 LINE L1 1915 2334 -173 1849 156 0 7 chr11 51959941 51960253 -96823219 - AluSx SINE Alu 0 314 5 23727 112 12 12 chr11 51960296 51964015 -96819457 + L1P LINE L1 901 4619 -1527 401 299 0 0 chr11 51964019 51964116 -96819356 - MIR SINE MIR -146 116 20 2055 134 0 7 chr11 51964116 51964422 -96819050 + AluSx SINE Alu 1 304 -8 293 175 0 48 chr11 51964918 51964981 -96818491 - L2 LINE L2 -213 3059 3000 1563 205 3 0 chr11 51965048 51965341 -96818131 + AluJb SINE Alu 3 296 -16 279 318 65 0 chr11 51965635 51965742 -96817730 + L1ME4a LINE L1 5531 5644 -520 1086 272 120 68 chr11 51965860 51966584 -96816888 + LTR41 LTR ERVL 5 766 -7 27 0 0 0 chr11 51966959 51966986 -96816486 + AT_rich Low_complexity Low_complexity 1 27 0 24 53 0 0 chr11 51967852 51967890 -96815582 + AT_rich Low_complexity Low_complexity 1 38 0 251 154 26 115 chr11 51968011 51968089 -96815383 - MIR SINE MIR -121 141 71 1555 189 0 17 chr11 51968376 51968673 -96814799 + AluJo SINE Alu 1 292 -20 31 26 0 0 chr11 51968937 51968975 -96814497 + AT_rich Low_complexity Low_complexity 1 38 0 281 261 62 11 chr11 51968998 51969174 -96814298 + L1ME4a LINE L1 5935 6119 -2 443 206 87 0 chr11 51969561 51969653 -96813819 + MER8 DNA MER2_type 23 122 -117 809 47 0 9 chr11 51969665 51969772 -96813700 - L1PA5 LINE L1 -1 6153 6048 966 60 0 0 chr11 51969772 51969905 -96813567 + L1PA5 LINE L1 5919 6051 -103 826 188 0 14 chr11 51970689 51970833 -96812639 - FRAM SINE Alu -13 163 22 392 197 0 0 chr11 51970898 51970974 -96812498 - Tigger2a DNA MER2_type -358 76 1 185 229 57 0 chr11 51971405 51971440 -96812032 - L2 LINE L2 -94 3219 3183 489 282 55 17 chr11 51971648 51971829 -96811643 - MIR SINE MIR -10 252 65 246 32 0 0 chr11 51972149 51972180 -96811292 + (CA)n Simple_repeat Simple_repeat 1 31 0 623 312 98 55 chr11 51972636 51973421 -96810051 - L1ME4a LINE L1 -52 6069 5255 462 100 67 33 chr11 51974378 51974468 -96809004 + L1PA8 LINE L1 6078 6170 -2 231 250 0 0 chr11 51974524 51974572 -96808900 + (TA)n Simple_repeat Simple_repeat 1 48 0 22 0 0 0 chr11 51974777 51974799 -96808673 + AT_rich Low_complexity Low_complexity 1 22 0 2049 138 3 0 chr11 51975273 51975569 -96807903 - AluSx SINE Alu -15 297 1 32 57 0 0 chr11 51975972 51976025 -96807447 + AT_rich Low_complexity Low_complexity 1 53 0 1738 112 0 0 chr11 51976029 51976262 -96807210 - AluSx SINE Alu -24 288 56 1927 168 34 67 chr11 51976809 51977255 -96806217 - Tigger2a DNA MER2_type -1 433 3 198 351 81 27 chr11 51977817 51977965 -96805507 - L2 LINE L2 -22 3291 3136 1170 230 31 14 chr11 51977969 51978256 -96805216 + AluJb SINE Alu 6 297 -15 201 348 21 70 chr11 51978259 51978345 -96805127 - L2 LINE L2 -159 3154 3080 2392 74 3 10 chr11 51978345 51978655 -96804817 - AluY SINE Alu -3 308 1 201 348 21 70 chr11 51978655 51978755 -96804717 - L2 LINE L2 -233 3080 2977 1763 155 11 7 chr11 51980018 51980330 -96803142 - AluSx SINE Alu 0 317 5 247 196 18 0 chr11 51980521 51980577 -96802895 + (TG)n Simple_repeat Simple_repeat 2 58 0 580 262 27 0 chr11 51983110 51983259 -96800213 - Tigger3(Golem) DNA MER2_type 0 3038 2886 999 125 0 0 chr11 51983439 51983583 -96799889 + AluSc SINE Alu 155 298 -11 739 213 0 0 chr11 51984663 51984804 -96798668 - FLAM_C SINE Alu 0 143 3 381 239 0 11 chr11 51984817 51984905 -96798567 - AluS SINE Alu -216 87 1 1684 169 0 0 chr11 51986121 51986381 -96797091 + AluSx SINE Alu 39 298 -14 2282 109 10 0 chr11 51986382 51986686 -96796786 + AluSg SINE Alu 2 308 -2 2013 93 75 0 chr11 51987053 51987331 -96796141 + AluSx SINE Alu 1 299 -13 525 212 10 0 chr11 51988434 51988533 -96794939 + AluJ/FLAM SINE Alu 1 100 -212 2150 125 0 22 chr11 51988554 51988873 -96794599 - AluSx SINE Alu 0 312 1 341 290 145 0 chr11 51989781 51989967 -96793505 + L3 LINE CR1 1214 1426 -151 444 317 0 0 chr11 51990425 51990548 -96792924 - MLT2B3 LTR ERVL -57 497 375 * 925 234 17 17 chr11 51990546 51990785 -96792687 - MLT2B3 LTR ERVL -315 239 1 441 99 33 55 chr11 51991024 51991115 -96792357 - L1PA10 LINE L1 -3 6165 6077 293 337 11 80 chr11 51993110 51993386 -96790086 - L2 LINE L2 -63 3250 2994 347 181 0 24 chr11 51993422 51993505 -96789967 + (TATG)n Simple_repeat Simple_repeat 2 82 0 249 391 94 0 chr11 51993511 51993703 -96789769 - L2 LINE L2 -349 2965 2756 1520 175 10 0 chr11 51995343 51995651 -96787821 - AluY SINE Alu 0 311 1 374 291 50 31 chr11 51998831 51999150 -96784322 + L1ME3A LINE L1 5266 5590 -576 362 259 88 6 chr11 51999206 51999376 -96784096 + L1ME3A LINE L1 5683 5866 -304 1311 191 20 20 chr11 51999561 51999854 -96783618 + AluJo SINE Alu 3 295 -17 22 35 0 0 chr11 51999909 51999938 -96783534 + AT_rich Low_complexity Low_complexity 1 29 0 39493 64 4 1 chr11 52000197 52006320 -96777152 - L1PA5 LINE L1 -4 6150 11 1872 104 54 11 chr11 52007719 52007998 -96775474 - AluSp SINE Alu -22 291 1 1965 213 9 2 chr11 52008676 52009132 -96774340 - L1 LINE L1 -1056 5090 4632 270 313 0 0 chr11 52009384 52009464 -96774008 - LTR50 LTR ERVL -715 80 1 297 0 0 0 chr11 52009737 52009770 -96773702 + (TC)n Simple_repeat Simple_repeat 2 34 0 1835 159 0 0 chr11 52009776 52010052 -96773420 - AluSx SINE Alu -36 276 1 375 76 25 38 chr11 52010209 52010288 -96773184 + L1MA3 LINE L1 6228 6305 0 285 342 27 0 chr11 52010450 52010561 -96772911 - L2 LINE L2 0 3313 3200 438 319 41 98 chr11 52010744 52011010 -96772462 - MIR SINE MIR -4 258 8 340 290 0 57 chr11 52011050 52011174 -96772298 - L2 LINE L2 -1 3271 3155 1612 135 17 0 chr11 52012284 52012572 -96770900 + L1MA9 LINE L1 6015 6307 -5 884 176 0 34 chr11 52014260 52014440 -96769032 + FRAM SINE Alu 4 178 0 1105 256 43 3 chr11 52014901 52015225 -96768247 - LTR16A LTR ERVL -13 437 101 229 322 117 37 chr11 52015358 52015549 -96767923 - MIR SINE MIR -51 211 16 289 296 0 52 chr11 52015716 52015831 -96767641 - MIR SINE MIR -121 141 33 224 175 16 0 chr11 52016363 52016426 -96767046 + CT-rich Low_complexity Low_complexity 1 64 0 498 249 70 65 chr11 52017909 52018110 -96765362 - MIR3 SINE MIR -5 203 2 257 238 16 0 chr11 52018542 52018605 -96764867 - L2 LINE L2 -8 3305 3242 23 0 0 0 chr11 52018844 52018867 -96764605 + AT_rich Low_complexity Low_complexity 1 23 0 4292 297 130 15 chr11 52019065 52021351 -96762121 - L2 LINE L2 -8 3305 764 571 147 35 69 chr11 52022331 52022447 -96761025 - L1MA6 LINE L1 -9 6291 6180 1980 144 0 0 chr11 52022577 52022862 -96760610 - AluSx SINE Alu -25 287 3 199 197 155 0 chr11 52023244 52023315 -96760157 + MIR SINE MIR 127 208 -54 323 282 82 93 chr11 52023490 52023770 -96759702 + L2 LINE L2 3032 3308 -5 186 372 26 0 chr11 52023850 52023928 -96759544 - L2 LINE L2 -71 3201 3122 930 192 4 6 chr11 52023970 52024143 -96759329 - MLT1C LTR MaLR 0 483 305 290 65 0 22 chr11 52024552 52024598 -96758874 + (CAGAGA)n Simple_repeat Simple_repeat 4 48 0 189 0 0 0 chr11 52024766 52024787 -96758685 + (TG)n Simple_repeat Simple_repeat 2 22 0 798 211 128 45 chr11 52024788 52025030 -96758442 - MER2 DNA MER2_type 0 345 84 368 105 0 0 chr11 52025027 52025084 -96758388 - U2 snRNA snRNA -131 57 1 * 341 192 13 64 chr11 52025087 52025165 -96758307 - MER2 DNA MER2_type -248 97 24 258 220 0 0 chr11 52025240 52025299 -96758173 + (TATATG)n Simple_repeat Simple_repeat 4 62 0 490 126 16 0 chr11 52025417 52025515 -96757957 + L1MA1 LINE L1 5835 5938 -362 1668 112 7 4 chr11 52025519 52025788 -96757684 + L1MA2 LINE L1 5867 6136 -168 30 52 0 39 chr11 52025981 52026058 -96757414 + AT_rich Low_complexity Low_complexity 1 74 0 21 36 0 0 chr11 52026689 52026717 -96756755 + AT_rich Low_complexity Low_complexity 1 28 0 249 274 16 0 chr11 52026950 52027012 -96756460 + MIR SINE MIR 199 261 -1 26 0 0 0 chr11 52027094 52027120 -96756352 + AT_rich Low_complexity Low_complexity 1 26 0 36 23 0 0 chr11 52027396 52027439 -96756033 + AT_rich Low_complexity Low_complexity 1 43 0 458 99 80 0 chr11 52027439 52027601 -96755871 + (TA)n Simple_repeat Simple_repeat 2 176 0 31 44 0 0 chr11 52027825 52027870 -96755602 + AT_rich Low_complexity Low_complexity 1 45 0 299 244 52 146 chr11 52029990 52030277 -96753195 - L2 LINE L2 -817 2497 2238 873 314 25 19 chr11 52030410 52030725 -96752747 - MLT1J2 LTR MaLR -131 319 3 613 266 122 8 chr11 52030726 52030963 -96752509 - L2 LINE L2 -1092 2222 1959 198 0 0 0 chr11 52031111 52031133 -96752339 + (TA)n Simple_repeat Simple_repeat 2 23 0 3557 106 10 4 chr11 52031136 52031644 -96751828 + MER9 LTR ERVK 1 511 0 24 67 0 0 chr11 52031825 52031870 -96751602 + AT_rich Low_complexity Low_complexity 1 45 0 1869 161 3 7 chr11 52031883 52032193 -96751279 - AluJb SINE Alu -3 309 1 243 329 13 0 chr11 52032945 52033021 -96750451 - L2 LINE L2 -1379 1935 1859 1687 171 3 7 chr11 52033100 52033392 -96750080 - MER47A DNA MER2_type -74 292 2 31 0 0 0 chr11 52033566 52033597 -96749875 + AT_rich Low_complexity Low_complexity 1 31 0 343 276 29 12 chr11 52033679 52033849 -96749623 + L1ME3A LINE L1 5255 5427 -737 1761 253 60 38 chr11 52033851 52034188 -96749284 + L1ME3A LINE L1 5499 5827 -343 656 269 66 5 chr11 52034188 52034385 -96749087 - MER63A DNA MER1_type 0 210 2 1761 253 60 38 chr11 52034385 52034700 -96748772 + L1ME3A LINE L1 5827 6165 -5 229 203 17 17 chr11 52034761 52034820 -96748652 + L1ME4a LINE L1 5964 6022 -99 2051 105 14 3 chr11 52034904 52035198 -96748274 + AluSc SINE Alu 1 297 -12 27 0 0 0 chr11 52035231 52035258 -96748214 + AT_rich Low_complexity Low_complexity 1 27 0 318 286 71 0 chr11 52035519 52035617 -96747855 - L1ME2 LINE L1 -3 6161 6057 884 239 14 9 chr11 52035754 52035972 -96747500 + AluJo SINE Alu 1 219 -93 477 47 0 0 chr11 52035995 52036059 -96747413 + (GAAA)n Simple_repeat Simple_repeat 2 65 0 24 0 0 0 chr11 52036128 52036152 -96747320 + AT_rich Low_complexity Low_complexity 1 24 0 729 252 37 59 chr11 52036348 52036669 -96746803 - MER83C LTR ERV1 -11 362 49 246 259 0 0 chr11 52036735 52036793 -96746679 + MIR SINE MIR 97 154 -108 27 0 0 0 chr11 52037270 52037297 -96746175 + AT_rich Low_complexity Low_complexity 1 27 0 24 53 0 0 chr11 52038163 52038201 -96745271 + AT_rich Low_complexity Low_complexity 1 38 0 245 154 26 115 chr11 52038322 52038400 -96745072 - MIR SINE MIR -121 141 71 1509 189 0 17 chr11 52038687 52038984 -96744488 + AluJo SINE Alu 1 292 -20 31 26 0 0 chr11 52039248 52039286 -96744186 + AT_rich Low_complexity Low_complexity 1 38 0 348 264 62 11 chr11 52039309 52039487 -96743985 + L1ME4a LINE L1 5935 6121 0 471 206 87 0 chr11 52039872 52039964 -96743508 + MER8 DNA MER2_type 23 122 -117 807 47 0 9 chr11 52039976 52040083 -96743389 - L1PA5 LINE L1 -1 6153 6048 1001 60 0 0 chr11 52040083 52040216 -96743256 + L1PA5 LINE L1 5919 6051 -103 227 208 42 0 chr11 52040952 52041000 -96742472 + MER8 DNA MER2_type 107 156 -83 771 186 0 21 chr11 52041000 52041145 -96742327 - FRAM SINE Alu -13 163 22 420 197 0 0 chr11 52041210 52041286 -96742186 - Tigger2 DNA MER2_type -2642 76 1 185 229 57 0 chr11 52041717 52041752 -96741720 - L2 LINE L2 -94 3219 3183 500 282 55 17 chr11 52041960 52042141 -96741331 - MIR SINE MIR -10 252 65 228 35 0 0 chr11 52042463 52042492 -96740980 + (CA)n Simple_repeat Simple_repeat 1 29 0 303 304 62 46 chr11 52043078 52043466 -96740006 - L1ME4a LINE L1 -206 5915 5522 29 47 0 0 chr11 52043690 52043733 -96739739 + AT_rich Low_complexity Low_complexity 1 43 0 468 100 67 33 chr11 52044690 52044780 -96738692 + L1PA8 LINE L1 6078 6170 -2 219 244 0 0 chr11 52044836 52044881 -96738591 + (CATA)n Simple_repeat Simple_repeat 3 47 0 22 0 0 0 chr11 52045089 52045111 -96738361 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr11 52045752 52045774 -96737698 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr11 52046172 52046196 -96737276 + AT_rich Low_complexity Low_complexity 1 24 0 403 318 33 20 chr11 52046215 52046366 -96737106 + MIR SINE MIR 14 166 -96 505 217 72 7 chr11 52046480 52046618 -96736854 + MER31B LTR ERV1 320 466 0 228 243 90 113 chr11 52046618 52046840 -96736632 + HAL1 LINE L1 2291 2507 0 207 0 0 0 chr11 52046843 52046866 -96736606 + (TA)n Simple_repeat Simple_repeat 1 23 0 2306 131 19 8 chr11 52046921 52047281 -96736191 + THE1B LTR MaLR 1 364 0 209 359 147 16 chr11 52047402 52047586 -96735886 - L2 LINE L2 -830 2484 2277 1260 157 0 64 chr11 52048415 52048447 -96735025 + MER46A DNA MER2_type 3 35 -2696 369 108 0 0 chr11 52048447 52048512 -96734960 + L1MA2 LINE L1 6239 6303 -1 1260 157 0 64 chr11 52048512 52048728 -96734744 + MER46A DNA MER2_type 35 235 -1 16531 194 23 57 chr11 52049532 52050938 -96732534 - L1PA12 LINE L1 -1352 6232 4780 944 163 58 0 chr11 52050938 52051110 -96732362 - AluY SINE Alu 0 311 130 16531 194 23 57 chr11 52051110 52051471 -96732001 - L1PA12 LINE L1 -2804 4780 4408 2345 84 0 0 chr11 52051471 52051769 -96731703 - AluY SINE Alu -13 298 1 16531 194 23 57 chr11 52051769 52055172 -96728300 - L1PA12 LINE L1 -3176 4408 1 238 263 69 109 chr11 52055403 52055578 -96727894 + MIR SINE MIR 46 213 -49 896 281 96 35 chr11 52055880 52056419 -96727053 + L2 LINE L2 2686 3313 0 181 383 80 37 chr11 52056573 52056735 -96726737 - L2 LINE L2 -213 3059 2891 274 282 0 24 chr11 52057185 52057270 -96726202 + L1MC4a LINE L1 5834 5916 -1892 777 274 13 43 chr11 52057295 52057525 -96725947 + MIR SINE MIR 1 223 -39 604 254 0 8 chr11 52057928 52058090 -96725382 + FLAM_A SINE Alu 1 133 0 774 272 53 0 chr11 52058226 52058469 -96725003 - MIR SINE MIR 0 262 7 1475 216 13 0 chr11 52058558 52058864 -96724608 + AluJb SINE Alu 1 310 -2 204 248 0 0 chr11 52058867 52058968 -96724504 + A-rich Low_complexity Low_complexity 1 101 0 200 317 142 0 chr11 52059119 52059239 -96724233 - L2 LINE L2 -56 3257 3121 1110 106 0 0 chr11 52059646 52059797 -96723675 - AluSx SINE Alu -157 155 5 315 105 79 0 chr11 52059964 52060040 -96723432 + A-rich Low_complexity Low_complexity 3 84 0 1775 169 0 0 chr11 52061359 52061638 -96721834 + AluSx SINE Alu 1 279 -33 26 0 0 0 chr11 52062178 52062204 -96721268 + AT_rich Low_complexity Low_complexity 1 26 0 421 341 28 38 chr11 52062853 52063064 -96720408 + MIR SINE MIR 16 224 -38 310 289 56 28 chr11 52063085 52063227 -96720245 - L1M4 LINE L1 -3426 2720 2575 368 319 25 31 chr11 52063432 52063622 -96719850 + MIR SINE MIR 30 212 -50 21 95 0 0 chr11 52064181 52064244 -96719228 + AT_rich Low_complexity Low_complexity 1 63 0 234 236 0 0 chr11 52064298 52064353 -96719119 - MIR SINE MIR -102 160 106 211 319 56 0 chr11 52065111 52065183 -96718289 + L2 LINE L2 3175 3250 -22 225 65 0 0 chr11 52065800 52065831 -96717641 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 240 347 40 0 chr11 52065834 52065909 -96717563 + L2 LINE L2 3234 3311 -2 1459 191 109 87 chr11 52066060 52066690 -96716782 - LTR48B LTR ERV1 0 644 1 482 282 127 0 chr11 52067097 52067239 -96716233 - MIR SINE MIR -50 212 53 22 56 0 0 chr11 52068301 52068337 -96715135 + AT_rich Low_complexity Low_complexity 1 36 0 1246 225 32 113 chr11 52068486 52068696 -96714776 + LTR9 LTR ERV1 1 226 -386 2218 89 0 46 chr11 52068696 52069020 -96714452 + AluSp SINE Alu 1 309 -4 1246 225 32 113 chr11 52069020 52069333 -96714139 + LTR9 LTR ERV1 226 482 -130 21 0 0 0 chr11 52069700 52069721 -96713751 + AT_rich Low_complexity Low_complexity 1 21 0 390 375 26 62 chr11 52069920 52070224 -96713248 - L2 LINE L2 -30 3242 2950 1841 210 78 43 chr11 52070323 52070928 -96712544 + L1M4 LINE L1 2692 3317 -2829 269 277 15 0 chr11 52070937 52071002 -96712470 + L2 LINE L2 3204 3269 -3 248 286 36 54 chr11 52071188 52071300 -96712172 + MIR SINE MIR 136 245 -17 2297 76 0 17 chr11 52072137 52072439 -96711033 - AluSc SINE Alu -12 297 1 354 229 79 62 chr11 52072447 52072674 -96710798 - L1ME4a LINE L1 -185 5936 5706 2366 95 0 0 chr11 52073076 52073382 -96710090 + AluSx SINE Alu 1 306 -6 1040 314 68 14 chr11 52073551 52073991 -96709481 - LTR16B LTR ERVL 0 464 1 2099 257 52 29 chr11 52074356 52075048 -96708424 + L1ME2 LINE L1 5447 6154 -10 412 247 107 20 chr11 52075924 52076074 -96707398 + MIR SINE MIR 28 190 -72 591 295 11 66 chr11 52076263 52076534 -96706938 + MER46C DNA MER2_type 71 326 -12 1183 179 82 20 chr11 52078357 52078704 -96704768 - Charlie2 DNA MER1_type 0 2862 2494 1348 284 51 10 chr11 52078704 52079116 -96704356 + LTR16A LTR ERVL 1 429 -21 1337 217 103 56 chr11 52079127 52079263 -96704209 - Charlie2 DNA MER1_type -369 2493 2365 2126 117 7 0 chr11 52079263 52079561 -96703911 + AluSx SINE Alu 1 300 -12 1337 217 103 56 chr11 52079561 52080033 -96703439 - Charlie2 DNA MER1_type -497 2365 1856 658 297 113 8 chr11 52080042 52080298 -96703174 - Charlie2 DNA MER1_type -2544 318 36 201 278 289 11 chr11 52080447 52080537 -96702935 - L2 LINE L2 -4 3309 3195 267 293 12 12 chr11 52080538 52080620 -96702852 - Tigger5 DNA MER2_type 0 2323 2242 * 437 197 0 0 chr11 52080610 52080686 -96702786 + Tigger5 DNA MER2_type 2242 2317 -6 360 188 29 0 chr11 52080688 52080757 -96702715 - Tigger5 DNA MER2_type -2244 79 9 628 217 133 0 chr11 52081567 52081733 -96701739 + MER5A DNA MER1_type 1 188 -1 376 103 0 0 chr11 52081852 52081910 -96701562 - AluY SINE Alu 0 300 243 24 67 0 0 chr11 52081913 52081958 -96701514 + AT_rich Low_complexity Low_complexity 1 45 0 1833 66 0 4 chr11 52082102 52082344 -96701128 - AluY SINE Alu -70 241 1 183 42 0 0 chr11 52082721 52082745 -96700727 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1599 122 8 8 chr11 52082747 52082985 -96700487 - AluSx SINE Alu -29 283 46 30 59 0 0 chr11 52083098 52083149 -96700323 + AT_rich Low_complexity Low_complexity 1 51 0 24 67 0 0 chr11 52083205 52083250 -96700222 + AT_rich Low_complexity Low_complexity 1 45 0 684 265 39 17 chr11 52083407 52083641 -96699831 + L1ME2 LINE L1 5925 6163 -1 186 283 62 80 chr11 52084056 52084169 -96699303 - L2 LINE L2 -33 3280 3170 24 32 0 0 chr11 52084548 52084579 -96698893 + AT_rich Low_complexity Low_complexity 1 31 0 1857 111 75 0 chr11 52084910 52085189 -96698283 + AluSg SINE Alu 3 302 -8 273 310 113 14 chr11 52085298 52085440 -96698032 + L1MEd LINE L1 509 664 -5455 1151 295 72 35 chr11 52085770 52086885 -96696587 + L1MEd LINE L1 2269 3424 -2705 2085 119 7 0 chr11 52086903 52087197 -96696275 + AluSg SINE Alu 1 296 -14 420 299 174 15 chr11 52087345 52087931 -96695541 + L1MEd LINE L1 3457 4135 -1994 238 250 0 0 chr11 52088658 52088710 -96694762 + HAL1 LINE L1 2068 2119 -388 354 254 217 18 chr11 52088729 52089001 -96694471 + HAL1 LINE L1 2182 2507 0 2063 58 0 11 chr11 52089259 52089534 -96693938 + AluYa5 SINE Alu 31 302 -9 682 206 15 0 chr11 52089813 52089944 -96693528 - FLAM_A SINE Alu 0 133 1 2120 127 0 3 chr11 52090661 52090968 -96692504 + AluSx SINE Alu 1 306 -6 24 0 0 0 chr11 52091262 52091286 -96692186 + AT_rich Low_complexity Low_complexity 1 24 0 243 0 0 0 chr11 52092286 52092313 -96691159 + (TA)n Simple_repeat Simple_repeat 2 28 0 34 55 0 0 chr11 52092545 52092600 -96690872 + AT_rich Low_complexity Low_complexity 1 55 0 863 195 250 17 chr11 52093440 52093676 -96689796 - AluJo SINE Alu -8 294 4 655 155 202 0 chr11 52093803 52093932 -96689540 + FRAM SINE Alu 1 150 -26 1552 227 131 52 chr11 52094813 52095492 -96687980 + MER50 LTR ERV1 2 734 0 419 200 25 75 chr11 52095610 52095730 -96687742 + MER69 DNA AcHobo 1 2463 -63 209 333 0 0 chr11 52095746 52095812 -96687660 + (TATG)n Simple_repeat Simple_repeat 3 68 0 2157 114 23 0 chr11 52095962 52096268 -96687204 + AluSp SINE Alu 1 313 0 472 267 104 0 chr11 52096466 52096601 -96686871 - MIR SINE MIR -109 153 5 1270 192 155 3 chr11 52096620 52096911 -96686561 + MER58B DNA MER1_type 7 341 0 24 53 0 0 chr11 52097635 52097673 -96685799 + AT_rich Low_complexity Low_complexity 1 38 0 203 289 123 18 chr11 52097848 52097962 -96685510 - L2 LINE L2 -476 2838 2713 217 234 0 0 chr11 52098042 52098089 -96685383 + (CATA)n Simple_repeat Simple_repeat 1 47 0 383 335 106 0 chr11 52098617 52098778 -96684694 - MIR SINE MIR -36 226 49 359 20 0 20 chr11 52098983 52099032 -96684440 + (CAAAA)n Simple_repeat Simple_repeat 3 50 0 2200 77 7 0 chr11 52100034 52100321 -96683151 + AluSc SINE Alu 1 289 -20 357 125 0 0 chr11 52100321 52100377 -96683095 + (GGGGA)n Simple_repeat Simple_repeat 2 57 0 465 335 69 0 chr11 52101043 52101216 -96682256 - MIR SINE MIR 0 262 78 193 305 55 92 chr11 52101309 52101473 -96681999 + MIR SINE MIR 22 179 -83 230 316 18 18 chr11 52101647 52101704 -96681768 - L2 LINE L2 -102 3170 3114 * 318 294 24 0 chr11 52101696 52101781 -96681691 - MIR SINE MIR -2 260 174 246 259 0 0 chr11 52101853 52101911 -96681561 - MIR SINE MIR -108 154 97 738 255 34 59 chr11 52101977 52102299 -96681173 + MER83C LTR ERV1 49 362 -11 24 0 0 0 chr11 52102495 52102519 -96680953 + AT_rich Low_complexity Low_complexity 1 24 0 693 0 0 0 chr11 52102585 52102662 -96680810 + (TTTC)n Simple_repeat Simple_repeat 1 77 0 884 239 14 9 chr11 52102693 52102911 -96680561 - AluJo SINE Alu -93 219 1 318 286 71 0 chr11 52103048 52103146 -96680326 + L1ME2 LINE L1 6057 6161 -3 27 0 0 0 chr11 52103407 52103434 -96680038 + AT_rich Low_complexity Low_complexity 1 27 0 1989 113 14 3 chr11 52103467 52103758 -96679714 - AluSc SINE Alu -15 294 1 229 203 17 17 chr11 52103842 52103901 -96679571 - L1ME4a LINE L1 -99 6022 5964 1733 254 60 38 chr11 52103962 52104277 -96679195 - L1ME3A LINE L1 -5 6165 5858 656 269 66 5 chr11 52104277 52104474 -96678998 + MER63A DNA MER1_type 2 210 0 1733 254 60 38 chr11 52104474 52104811 -96678661 - L1ME3A LINE L1 -312 5858 5499 332 282 29 12 chr11 52104813 52104983 -96678489 - L1ME3A LINE L1 -735 5427 5255 31 0 0 0 chr11 52105065 52105096 -96678376 + AT_rich Low_complexity Low_complexity 1 31 0 1676 171 3 7 chr11 52105270 52105562 -96677910 + MER47A DNA MER2_type 2 292 -74 214 175 18 18 chr11 52105810 52105867 -96677605 + CT-rich Low_complexity Low_complexity 2 58 0 221 357 27 0 chr11 52105978 52106090 -96677382 + MIR3 SINE MIR 91 205 -3 349 317 40 74 chr11 52106111 52106313 -96677159 + MLT1K LTR MaLR 180 374 -214 351 286 63 51 chr11 52107261 52107436 -96676036 - MIR SINE MIR -55 207 31 22 56 0 0 chr11 52107570 52107606 -96675866 + AT_rich Low_complexity Low_complexity 1 36 0 2024 126 0 23 chr11 52107934 52108243 -96675229 - AluSc SINE Alu -7 302 1 252 348 142 19 chr11 52108283 52108438 -96675034 - MIR SINE MIR -75 187 14 3507 184 10 10 chr11 52108595 52109268 -96674204 + L1MC1 LINE L1 5659 6331 -2 1203 154 43 9 chr11 52109271 52109504 -96673968 + L1MC2 LINE L1 6095 6335 -9 1592 195 14 0 chr11 52109894 52110176 -96673296 - AluJo SINE Alu -26 286 1 181 333 24 60 chr11 52110378 52110462 -96673010 - L2 LINE L2 -19 3253 3173 372 282 84 30 chr11 52111026 52111157 -96672315 + L2 LINE L2 3133 3270 -2 3921 167 23 40 chr11 52111407 52112232 -96671240 - L1MA10 LINE L1 -15 6319 5509 217 139 0 0 chr11 52113046 52113082 -96670390 - L3 LINE CR1 -9 1568 1533 210 357 58 35 chr11 52114275 52114446 -96669026 + L2 LINE L2 228 402 -2912 1066 229 29 0 chr11 52114450 52114655 -96668817 - MER58A DNA MER1_type 0 224 14 608 254 99 20 chr11 52115275 52115476 -96667996 - MIR SINE MIR 0 262 46 626 307 108 39 chr11 52118272 52118735 -96664737 + MLT1G1 LTR MaLR 5 499 -56 1602 163 9 41 chr11 52118735 52118981 -96664491 + AluJb SINE Alu 1 236 -76 3453 153 29 3 chr11 52118981 52119600 -96663872 + MER41B LTR ERV1 1 635 0 1602 163 9 41 chr11 52119600 52119672 -96663800 + AluJb SINE Alu 236 309 -3 240 224 45 15 chr11 52119662 52119729 -96663743 + MLT1G1 LTR MaLR 477 545 -4 * 243 354 0 21 chr11 52119999 52120095 -96663377 + MIR SINE MIR 151 244 -18 216 175 0 0 chr11 52120222 52120262 -96663210 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 204 277 0 0 chr11 52120889 52120936 -96662536 + MIR SINE MIR 66 112 -150 342 239 84 52 chr11 52122097 52122252 -96661220 - MER110 LTR ERV1 -10 481 322 2130 125 7 0 chr11 52122788 52123091 -96660381 - AluSq SINE Alu -8 305 1 234 0 0 0 chr11 52123405 52123431 -96660041 + (CAA)n Simple_repeat Simple_repeat 2 27 0 1203 139 5 5 chr11 52123903 52124090 -96659382 - AluJo SINE Alu 0 312 126 752 303 92 54 chr11 52124162 52124627 -96658845 - MLT1K LTR MaLR -34 554 72 185 291 0 55 chr11 52124650 52124705 -96658767 - MIR3 SINE MIR -53 155 104 334 353 20 20 chr11 52125687 52125837 -96657635 + L2 LINE L2 3164 3313 0 231 62 0 0 chr11 52125915 52125947 -96657525 - MER53 DNA DNA -155 34 3 259 293 0 0 chr11 52126049 52126124 -96657348 - MLT1I LTR MaLR -26 383 309 335 205 12 12 chr11 52126243 52126326 -96657146 - L1MA9 LINE L1 -73 6239 6157 2587 176 32 63 chr11 52126678 52127356 -96656116 - L1 LINE L1 -1438 4708 4052 186 167 0 0 chr11 52129234 52129270 -96654202 + (CATA)n Simple_repeat Simple_repeat 2 37 0 2325 89 8 22 chr11 52129612 52129973 -96653499 + L1MA1 LINE L1 5947 6302 0 23 0 0 0 chr11 52129973 52129996 -96653476 + AT_rich Low_complexity Low_complexity 1 23 0 258 324 50 82 chr11 52130184 52130366 -96653106 + MIR SINE MIR 1 176 -86 561 62 12 12 chr11 52131008 52131088 -96652384 + L1P1 LINE L1 5424 5503 -652 358 295 84 30 chr11 52131196 52131362 -96652110 - L2 LINE L2 -33 3280 3106 1983 115 0 27 chr11 52131696 52131991 -96651481 + AluSg SINE Alu 1 287 -23 225 65 0 0 chr11 52131992 52132023 -96651449 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 341 254 118 9 chr11 52132262 52132372 -96651100 + MER5A DNA MER1_type 50 171 -18 * 495 204 20 10 chr11 52132279 52132377 -96651095 - MER5A DNA MER1_type -67 122 24 243 0 0 0 chr11 52132475 52132502 -96650970 + (TG)n Simple_repeat Simple_repeat 1 27 0 1566 167 13 29 chr11 52132900 52133206 -96650266 + AluSg SINE Alu 1 301 -9 1756 144 54 0 chr11 52133246 52133523 -96649949 + AluSx SINE Alu 1 292 -20 3480 180 34 1 chr11 52134946 52135595 -96647877 + L1PA15 LINE L1 5496 6165 0 323 305 107 32 chr11 52135727 52135914 -96647558 + MIR SINE MIR 6 206 -56 1734 121 0 141 chr11 52136349 52136704 -96646768 - AluSc SINE Alu -4 305 1 650 207 99 91 chr11 52137131 52137493 -96645979 + MLT1A1 LTR MaLR 1 365 0 1434 196 3 42 chr11 52137603 52137909 -96645563 + AluJb SINE Alu 4 297 -15 2865 75 22 10 chr11 52138090 52138492 -96644980 - L1PA7 LINE L1 -5 6149 5743 1322 59 5 32 chr11 52138922 52139108 -96644364 + L1PA4 LINE L1 5971 6151 -4 1484 235 23 3 chr11 52139137 52139529 -96643943 - L1 LINE L1 -3156 2990 2591 1027 94 6 66 chr11 52139537 52139718 -96643754 + L1PA11 LINE L1 6005 6174 0 387 294 101 12 chr11 52139839 52140087 -96643385 - L1M4 LINE L1 -779 5367 5098 186 273 55 0 chr11 52140115 52140170 -96643302 + MIR3 SINE MIR 132 189 -19 243 358 83 52 chr11 52140706 52140935 -96642537 + L2 LINE L2 3022 3257 -15 270 219 164 0 chr11 52141000 52141073 -96642399 - L2 LINE L2 0 3313 3229 204 146 29 44 chr11 52141178 52141315 -96642157 + (TATAA)n Simple_repeat Simple_repeat 3 137 0 185 402 11 0 chr11 52141358 52141450 -96642022 - MIR SINE MIR -122 140 48 1902 128 7 10 chr11 52141686 52141975 -96641497 - AluSx SINE Alu -24 288 1 209 378 0 0 chr11 52142171 52142253 -96641219 + MIR SINE MIR 66 147 -115 181 152 109 43 chr11 52142728 52142774 -96640698 - L2 LINE L2 -3 3310 3262 33 0 0 0 chr11 52143312 52143345 -96640127 + AT_rich Low_complexity Low_complexity 1 33 0 231 343 55 0 chr11 52144222 52144295 -96639177 - L2 LINE L2 0 3272 3196 188 330 19 48 chr11 52144425 52144528 -96638944 + L2 LINE L2 3159 3258 -14 309 227 45 4 chr11 52144719 52144834 -96638638 - MIR SINE MIR -6 256 99 2501 69 3 0 chr11 52145099 52145405 -96638067 + AluY SINE Alu 1 307 -4 229 340 68 27 chr11 52145657 52145804 -96637668 + MIR SINE MIR 12 164 -98 1454 216 48 31 chr11 52147053 52147404 -96636068 + MLT2D LTR ERVL 1 357 -57 297 0 0 0 chr11 52147440 52147473 -96635999 + (CA)n Simple_repeat Simple_repeat 2 34 0 271 167 0 0 chr11 52147524 52147572 -96635900 + MLT2D LTR ERVL 473 520 0 318 331 87 33 chr11 52149368 52149859 -96633613 + MLT1H LTR MaLR 31 555 0 254 171 0 182 chr11 52149941 52150029 -96633443 + HsTC2 DNA Tc2 1821 1892 -6 242 371 30 8 chr11 52150352 52150484 -96632988 + MIR SINE MIR 72 206 -56 1929 244 89 78 chr11 52150661 52151245 -96632227 + L1MB7 LINE L1 3724 4327 -1819 2063 153 0 0 chr11 52151245 52151553 -96631919 + AluSx SINE Alu 1 308 -4 1929 244 89 78 chr11 52151553 52152050 -96631422 + L1MB7 LINE L1 4327 4817 -1329 1046 288 123 19 chr11 52152068 52152635 -96630837 + L1MB7 LINE L1 5527 6152 -32 2022 77 0 0 chr11 52152639 52152927 -96630545 - AluSp SINE Alu 0 326 39 487 278 107 44 chr11 52152937 52153387 -96630085 + L1ME4a LINE L1 3836 4313 -1833 789 173 23 70 chr11 52153423 52153599 -96629873 - MLT1A1 LTR MaLR 0 378 215 28 0 0 0 chr11 52153618 52153646 -96629826 + AT_rich Low_complexity Low_complexity 1 28 0 1013 86 0 0 chr11 52153649 52153788 -96629684 + AluY SINE Alu 171 309 -2 676 199 7 7 chr11 52153788 52153924 -96629548 - MLT1A1 LTR MaLR -227 138 3 863 302 72 38 chr11 52153971 52155067 -96628405 + L1ME4a LINE L1 4420 5552 -612 1843 40 0 0 chr11 52155068 52155294 -96628178 - L1PA4 LINE L1 -1080 5066 4841 7252 42 7 2 chr11 52155294 52156394 -96627078 + L1PA4 LINE L1 5051 6155 0 294 305 76 34 chr11 52156412 52156597 -96626875 + L1ME4a LINE L1 5599 5798 -372 369 0 0 0 chr11 52156597 52156638 -96626834 + (TG)n Simple_repeat Simple_repeat 2 42 0 294 305 76 34 chr11 52156638 52156688 -96626784 + L1ME4a LINE L1 5798 5844 -326 935 60 24 30 chr11 52156796 52157116 -96626356 + (GAAA)n Simple_repeat Simple_repeat 1 318 0 2407 123 24 67 chr11 52156840 52156879 -96626593 - MLT2A1 LTR ERVL 0 444 405 189 0 0 0 chr11 52156879 52156900 -96626572 + (TGGA)n Simple_repeat Simple_repeat 2 22 0 2407 123 24 67 chr11 52156900 52156948 -96626524 - MLT2A1 LTR ERVL -39 405 356 935 60 24 30 chr11 52156948 52157116 -96626356 + (GAAA)n Simple_repeat Simple_repeat 1 167 0 2407 123 24 67 chr11 52157116 52157491 -96625981 - MLT2A1 LTR ERVL -88 356 1 227 228 35 0 chr11 52157584 52157641 -96625831 - L1MC4 LINE L1 -1326 6716 6658 531 214 43 53 chr11 52157675 52157808 -96625664 - L1PA6 LINE L1 -34 6129 6007 293 300 58 25 chr11 52160443 52160563 -96622909 - L2 LINE L2 0 3313 3190 649 84 0 0 chr11 52160614 52160697 -96622775 - L1PA13 LINE L1 -545 5623 5541 3532 104 25 29 chr11 52160700 52161259 -96622213 + L1PA13 LINE L1 5607 6163 0 1090 63 0 7 chr11 52161262 52161405 -96622067 + AluY SINE Alu 160 301 -10 1477 321 98 38 chr11 52161466 52161559 -96621913 - L2 LINE L2 -452 2862 2776 2172 106 0 0 chr11 52161559 52161852 -96621620 + AluSx SINE Alu 1 293 -19 1477 321 98 38 chr11 52161852 52162577 -96620895 - L2 LINE L2 -538 2776 1995 333 339 60 30 chr11 52162742 52162772 -96620700 - MIR SINE MIR -77 185 157 912 230 25 21 chr11 52162772 52163007 -96620465 - MER46A DNA MER2_type 0 236 1 333 339 60 30 chr11 52163007 52163144 -96620328 - MIR SINE MIR -105 157 13 1847 311 71 35 chr11 52163651 52164814 -96618658 - L2 LINE L2 -47 3266 2073 254 269 92 15 chr11 52164938 52165068 -96618404 + L1ME4a LINE L1 5941 6080 -41 626 272 49 0 chr11 52165302 52165486 -96617986 + MIR SINE MIR 6 198 -64 41 0 0 0 chr11 52165803 52165844 -96617628 + AT_rich Low_complexity Low_complexity 1 41 0 471 329 43 19 chr11 52165931 52166141 -96617331 - MIR SINE MIR 0 262 48 311 246 44 35 chr11 52166154 52166268 -96617204 - L1MC/D LINE L1 -1993 5815 5701 453 265 32 65 chr11 52168008 52168193 -96615279 - MIR SINE MIR -61 201 23 1010 218 14 9 chr11 52168386 52168602 -96614870 - MER20 DNA MER1_type -1 218 2 21 0 0 0 chr11 52169045 52169066 -96614406 + AT_rich Low_complexity Low_complexity 1 21 0 332 299 49 54 chr11 52169644 52169828 -96613644 + MIR SINE MIR 35 217 -45 652 261 30 73 chr11 52169870 52169907 -96613565 - MIR SINE MIR -24 238 201 617 126 0 29 chr11 52169907 52170010 -96613462 - L1PA8A LINE L1 -1 6130 6031 652 261 30 73 chr11 52170010 52170206 -96613266 - MIR SINE MIR -61 201 15 297 0 0 0 chr11 52170403 52170436 -96613036 + (CA)n Simple_repeat Simple_repeat 2 34 0 230 320 144 8 chr11 52170603 52170728 -96612744 + MIR SINE MIR 119 260 -2 261 133 145 36 chr11 52174364 52174447 -96609025 + L1PA6 LINE L1 6063 6154 0 212 264 33 55 chr11 52174738 52174829 -96608643 - MIR SINE MIR -33 175 86 261 0 0 0 chr11 52174989 52175018 -96608454 + (TC)n Simple_repeat Simple_repeat 2 30 0 * 360 0 0 0 chr11 52175017 52175057 -96608415 + (TG)n Simple_repeat Simple_repeat 1 40 0 180 0 0 0 chr11 52175056 52175076 -96608396 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 387 0 0 0 chr11 52175414 52175457 -96608015 + (CA)n Simple_repeat Simple_repeat 2 44 0 207 289 0 33 chr11 52176042 52176132 -96607340 + (CGG)n Simple_repeat Simple_repeat 3 89 0 195 42 0 0 chr11 52177247 52177271 -96606201 + (GAAA)n Simple_repeat Simple_repeat 3 26 0 760 279 171 3 chr11 52178073 52178389 -96605083 + L2 LINE L2 2423 2791 -523 361 287 52 17 chr11 52178898 52179013 -96604459 - L2 LINE L2 0 3272 3154 252 329 43 56 chr11 52179226 52179387 -96604085 - L2 LINE L2 -248 3024 2866 199 259 123 0 chr11 52180239 52180320 -96603152 + MIR SINE MIR 56 146 -116 260 260 135 0 chr11 52180587 52180691 -96602781 + MIR SINE MIR 123 240 -22 336 298 78 14 chr11 52181494 52181635 -96601837 + MIR SINE MIR 95 244 -18 555 262 94 20 chr11 52181636 52181880 -96601592 + MIR SINE MIR 1 262 0 314 345 88 27 chr11 52182880 52183028 -96600444 + L2 LINE L2 3104 3260 -12 403 265 61 0 chr11 52183329 52183427 -96600045 - MIR3 SINE MIR -23 185 82 488 313 12 12 chr11 52183711 52183874 -96599598 + MIR SINE MIR 2 164 -98 1087 320 105 84 chr11 52183945 52185769 -96597703 - L2 LINE L2 -79 3234 1376 316 354 78 29 chr11 52185949 52186155 -96597317 - MIR SINE MIR -26 236 21 2163 168 52 0 chr11 52186218 52186582 -96596890 - MLT1B LTR MaLR 0 390 8 486 323 88 35 chr11 52187878 52188364 -96595108 + L1MEd LINE L1 518 1029 -5605 246 362 135 16 chr11 52188382 52188567 -96594905 - L2 LINE L2 -361 2953 2747 8079 224 18 5 chr11 52189137 52191107 -96592365 - L1 LINE L1 -1587 4559 2564 26 0 0 0 chr11 52191107 52191133 -96592339 + AT_rich Low_complexity Low_complexity 1 26 0 1058 301 18 8 chr11 52191133 52191642 -96591830 - L1M4 LINE L1 -2507 3639 3126 275 225 0 14 chr11 52191822 52191893 -96591579 + Charlie5 DNA MER1_type 30 99 -2513 483 209 0 0 chr11 52191905 52192010 -96591462 + Charlie5 DNA MER1_type 2248 2352 -260 288 154 0 0 chr11 52192152 52192204 -96591268 + (TG)n Simple_repeat Simple_repeat 2 53 0 919 295 114 60 chr11 52192213 52192966 -96590506 - LTR50 LTR ERVL -1 794 1 465 348 40 13 chr11 52193413 52193637 -96589835 - ERVL LTR ERVL -440 5324 5095 397 264 27 68 chr11 52194443 52194591 -96588881 + HERVL LTR ERVL 4152 4293 -1361 233 333 97 0 chr11 52194686 52194800 -96588672 - MER5B DNA MER1_type -1 177 53 267 300 11 105 chr11 52195600 52195724 -96587748 + MIR SINE MIR 7 131 -77 186 347 10 41 chr11 52195811 52195909 -96587563 + MIR SINE MIR 20 114 -94 380 281 0 36 chr11 52195911 52196050 -96587422 + L1MEd LINE L1 1422 1555 -4987 930 229 84 35 chr11 52196052 52196397 -96587075 + L1MEd LINE L1 1794 2155 -4491 1131 171 23 1 chr11 52196504 52196803 -96586669 + MER1B DNA MER1_type 1 338 -1 6454 248 51 32 chr11 52196818 52197753 -96585719 + L1MEd LINE L1 2534 3450 -3194 2337 104 0 0 chr11 52197753 52198051 -96585421 - AluSq SINE Alu -15 298 1 6454 248 51 32 chr11 52198051 52199635 -96583837 + L1MEd LINE L1 3450 5099 -1545 1047 205 39 35 chr11 52199637 52199866 -96583606 - L1M4b LINE L1 -6623 236 7 672 45 0 0 chr11 52200061 52200149 -96583323 - L1PA13 LINE L1 -1 6162 6075 2274 84 36 3 chr11 52200149 52200426 -96583046 + L1PA12 LINE L1 5535 5824 -344 203 0 37 0 chr11 52200426 52200453 -96583019 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 2274 84 36 3 chr11 52200453 52200484 -96582988 + L1PA12 LINE L1 5824 5853 -315 21 0 0 0 chr11 52201441 52201462 -96582010 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr11 52204050 52204073 -96579399 + (A)n Simple_repeat Simple_repeat 1 23 0 224 301 68 0 chr11 52204571 52204644 -96578828 - L2 LINE L2 -6 3307 3230 246 62 0 0 chr11 52204757 52204789 -96578683 + (TG)n Simple_repeat Simple_repeat 1 32 0 797 258 42 32 chr11 52204974 52205191 -96578281 + MIR SINE MIR 16 234 -28 28 29 0 0 chr11 52205552 52205587 -96577885 + AT_rich Low_complexity Low_complexity 1 35 0 224 326 154 26 chr11 52206962 52207195 -96576277 + L2 LINE L2 2715 2977 -337 231 245 82 0 chr11 52207453 52207502 -96575970 - L2 LINE L2 -27 3286 3234 28 71 0 0 chr11 52207597 52207653 -96575819 + AT_rich Low_complexity Low_complexity 1 56 0 242 343 56 9 chr11 52208073 52208181 -96575291 - MIR SINE MIR 0 262 150 2089 194 5 10 chr11 52208183 52208215 -96575257 - MLT1B LTR MaLR -2 388 357 12433 152 35 38 chr11 52208215 52210639 -96572833 - Tigger1 DNA MER2_type 0 2418 1 2089 194 5 10 chr11 52210639 52210993 -96572479 - MLT1B LTR MaLR -33 357 4 357 313 145 0 chr11 52210993 52211124 -96572348 - MIR SINE MIR -108 154 5 23 33 0 0 chr11 52211132 52211162 -96572310 + AT_rich Low_complexity Low_complexity 1 30 0 323 160 0 0 chr11 52211268 52211318 -96572154 + 5S rRNA rRNA 43 92 -29 342 222 148 9 chr11 52211437 52211545 -96571927 - MIR SINE MIR -35 227 105 209 278 19 19 chr11 52212278 52212332 -96571140 + MIR SINE MIR 20 73 -135 191 286 143 13 chr11 52212383 52212460 -96571012 + MIR SINE MIR 66 152 -110 2255 178 8 0 chr11 52212477 52212877 -96570595 - MER57A LTR ERV1 0 403 1 221 269 250 29 chr11 52213762 52213866 -96569606 + MIR3 SINE MIR 28 154 -54 218 245 0 0 chr11 52214000 52214049 -96569423 - MIR SINE MIR -108 154 106 25 31 0 0 chr11 52214144 52214176 -96569296 + AT_rich Low_complexity Low_complexity 1 32 0 499 357 111 46 chr11 52214363 52215287 -96568185 + L2 LINE L2 2185 3178 -94 4431 185 43 33 chr11 52215500 52215993 -96567479 - L1MC3 LINE L1 0 7785 7299 3183 160 97 8 chr11 52215993 52216635 -96566837 + MER39 LTR ERV1 5 703 -4 4431 185 43 33 chr11 52216635 52217178 -96566294 - L1MC3 LINE L1 -486 7299 6738 1644 216 52 93 chr11 52217175 52218064 -96565408 - L1MCb LINE L1 -4851 1194 551 * 1685 274 46 22 chr11 52218142 52218690 -96564782 - L1MCb LINE L1 -5483 562 2 202 314 98 10 chr11 52219870 52219972 -96563500 - MIR SINE MIR -27 235 125 315 283 45 91 chr11 52220449 52220647 -96562825 - MIR SINE MIR -69 193 5 911 286 126 50 chr11 52220772 52221192 -96562280 - LTR67 LTR ERVL 0 557 106 21 0 0 0 chr11 52221642 52221663 -96561809 + AT_rich Low_complexity Low_complexity 1 21 0 270 270 170 31 chr11 52222155 52222314 -96561158 + MIR SINE MIR 63 243 -19 411 241 144 18 chr11 52222579 52222749 -96560723 - MIR SINE MIR -55 207 5 197 105 0 26 chr11 52222854 52222892 -96560580 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 578 325 5 20 chr11 52223290 52223490 -96559982 - MIR SINE MIR -1 261 65 190 366 59 10 chr11 52223855 52223956 -96559516 + L2 LINE L2 2891 2996 -276 351 370 87 0 chr11 52224333 52224460 -96559012 - L2 LINE L2 -1 3271 3134 631 355 78 29 chr11 52224616 52225129 -96558343 - L2 LINE L2 -562 2752 2215 332 351 59 0 chr11 52225129 52225279 -96558193 - MIR SINE MIR -64 198 36 522 200 9 0 chr11 52225576 52225681 -96557791 + FLAM_A SINE Alu 31 136 -6 22 35 0 0 chr11 52226654 52226683 -96556789 + AT_rich Low_complexity Low_complexity 1 29 0 193 348 59 8 chr11 52227372 52227490 -96555982 - MIR SINE MIR -10 252 129 391 269 140 35 chr11 52227546 52227717 -96555755 - MLT1J LTR MaLR -206 305 117 256 323 94 16 chr11 52228098 52228225 -96555247 - L2 LINE L2 0 3313 3177 233 273 15 0 chr11 52228566 52228632 -96554840 - HAL1 LINE L1 -7 2500 2434 507 279 101 10 chr11 52228647 52228945 -96554527 - HAL1 LINE L1 -120 2387 2063 228 360 72 16 chr11 52229171 52229296 -96554176 - L2 LINE L2 0 3313 3182 467 143 0 9 chr11 52230635 52230747 -96552725 + (TA)n Simple_repeat Simple_repeat 1 111 0 686 241 73 18 chr11 52231864 52232084 -96551388 - MIR SINE MIR 0 262 31 400 363 25 29 chr11 52233285 52233525 -96549947 + L3 LINE CR1 1320 1558 -19 2875 3 3 0 chr11 52233614 52233931 -96549541 - AluYb8 SINE Alu 0 318 1 333 0 0 0 chr11 52235535 52235572 -96547900 + (A)n Simple_repeat Simple_repeat 1 37 0 311 291 63 34 chr11 52236253 52236428 -96547044 - MIR SINE MIR -13 249 70 21 36 0 0 chr11 52236476 52236504 -96546968 + AT_rich Low_complexity Low_complexity 1 28 0 239 328 8 16 chr11 52236596 52236724 -96546748 - L1ME LINE L1 -439 5682 5556 534 310 19 0 chr11 52236955 52237110 -96546362 + MIR SINE MIR 32 189 -73 281 331 103 29 chr11 52237505 52237641 -96545831 - L2 LINE L2 0 3272 3127 1125 221 9 22 chr11 52237847 52238073 -96545399 + MER58A DNA MER1_type 2 224 0 2040 116 57 25 chr11 52238401 52238754 -96544718 - THE1B LTR MaLR 0 364 1 201 330 115 34 chr11 52238758 52238967 -96544505 + L2 LINE L2 1501 1726 -1588 354 349 169 26 chr11 52239039 52239389 -96544083 + L2 LINE L2 1725 2124 -1190 915 271 8 12 chr11 52239459 52239703 -96543769 + L1PB4 LINE L1 5912 6154 -2 225 160 140 0 chr11 52239803 52239853 -96543619 - LTR16A LTR ERVL -141 309 253 204 250 0 0 chr11 52239856 52239904 -96543568 + (TA)n Simple_repeat Simple_repeat 2 49 0 238 259 0 74 chr11 52239904 52239985 -96543487 - MLT2C1 LTR ERVL -54 343 269 660 315 39 22 chr11 52240225 52240457 -96543015 - HERV16 LTR ERVL -4758 238 3 563 348 41 15 chr11 52240474 52240744 -96542728 - LTR16A LTR ERVL -156 294 18 818 306 98 82 chr11 52240834 52241001 -96542471 + L2 LINE L2 2222 2385 -929 1899 140 28 9 chr11 52241001 52241322 -96542150 + L1PB3 LINE L1 5824 6150 -4 818 306 98 82 chr11 52241322 52241788 -96541684 + L2 LINE L2 2385 2865 -449 487 336 98 5 chr11 52242620 52242834 -96540638 - MIR SINE MIR -27 235 2 22 0 0 0 chr11 52243203 52243225 -96540247 + AT_rich Low_complexity Low_complexity 1 22 0 339 230 124 43 chr11 52244055 52244216 -96539256 - MIR SINE MIR -32 230 57 271 339 17 26 chr11 52244380 52244495 -96538977 - MIR SINE MIR -115 147 34 2822 191 25 11 chr11 52245493 52246047 -96537425 - MER68 LTR ERV1 0 562 1 737 217 19 0 chr11 52246334 52246495 -96536977 - MER82 DNA MER2_type -2 651 488 935 209 81 0 chr11 52246624 52246834 -96536638 - MER82 DNA MER2_type -425 228 2 2104 144 3 0 chr11 52248585 52248897 -96534575 - AluSq SINE Alu 0 313 1 45 0 0 0 chr11 52249464 52249509 -96533963 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr11 52249975 52249998 -96533474 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr11 52250284 52250306 -96533166 + AT_rich Low_complexity Low_complexity 1 22 0 2019 106 7 0 chr11 52251155 52251469 -96532003 - AluSq SINE Alu 0 316 1 2091 70 0 25 chr11 52253395 52253736 -96529736 + AluY SINE Alu 4 337 0 1422 201 17 14 chr11 52254131 52254420 -96529052 - AluJo SINE Alu -22 290 1 24 32 0 0 chr11 52255908 52255939 -96527533 + AT_rich Low_complexity Low_complexity 1 31 0 334 353 13 6 chr11 52256027 52256183 -96527289 + GA-rich Low_complexity Low_complexity 4 160 0 244 259 35 35 chr11 52257268 52257353 -96526119 + L2 LINE L2 3229 3313 0 6063 72 148 98 chr11 52257463 52258615 -96524857 - L1P LINE L1 -3799 2347 1139 6796 47 26 19 chr11 52258615 52259575 -96523897 + L1PA5 LINE L1 5189 6154 0 205 135 39 0 chr11 52259614 52259666 -96523806 + (TA)n Simple_repeat Simple_repeat 1 54 0 411 101 89 173 chr11 52259815 52259983 -96523489 + MER53 DNA DNA 9 162 -27 284 357 51 0 chr11 52260476 52260574 -96522898 + L2 LINE L2 3169 3271 -1 356 301 218 19 chr11 52261507 52261773 -96521699 - L1MC4a LINE L1 -1865 5943 5625 314 350 43 0 chr11 52261926 52262089 -96521383 - L1MC4a LINE L1 -2294 5514 5345 399 290 70 57 chr11 52262208 52262580 -96520892 - L1MC4a LINE L1 -946 5200 4824 781 237 54 5 chr11 52262584 52262770 -96520702 + MER20 DNA MER1_type 1 195 -24 2910 87 15 0 chr11 52262884 52263277 -96520195 + MLT2A1 LTR ERVL 1 399 -45 363 192 20 50 chr11 52263354 52263453 -96520019 + L1MC4 LINE L1 6607 6702 -1340 394 37 19 0 chr11 52263460 52263514 -96519958 + MLT2A1 LTR ERVL 390 444 0 228 67 0 0 chr11 52263597 52263627 -96519845 + (A)n Simple_repeat Simple_repeat 1 30 0 342 274 85 44 chr11 52263987 52264206 -96519266 - L1M4 LINE L1 -1907 4239 4009 364 169 67 0 chr11 52264478 52264567 -96518905 - L1MB4 LINE L1 -1 6179 6085 349 323 0 11 chr11 52265379 52265472 -96518000 + L2 LINE L2 2986 3077 -195 449 269 6 0 chr11 52266185 52266345 -96517127 + (TA)n Simple_repeat Simple_repeat 1 161 0 315 227 57 71 chr11 52266372 52266513 -96516959 + MER74B LTR ERVL 461 599 -23 22 0 0 0 chr11 52267275 52267297 -96516175 + AT_rich Low_complexity Low_complexity 1 22 0 420 359 41 0 chr11 52267502 52267697 -96515775 + MIR SINE MIR 44 246 -16 237 273 0 15 chr11 52268030 52268096 -96515376 + CT-rich Low_complexity Low_complexity 4 68 0 2143 106 0 0 chr11 52270255 52270538 -96512934 - AluSc SINE Alu -6 303 21 3409 254 33 20 chr11 52270575 52271596 -96511876 + L1MB2 LINE L1 2011 3045 -4521 997 148 27 118 chr11 52271596 52271735 -96511737 - L1MA5 LINE L1 -361 5939 5834 207 0 0 0 chr11 52271735 52271758 -96511714 + (TG)n Simple_repeat Simple_repeat 2 24 0 997 148 27 118 chr11 52271758 52271881 -96511591 - L1MA5 LINE L1 -466 5834 5701 1754 184 20 3 chr11 52271881 52272235 -96511237 + L1MA5 LINE L1 5939 6298 -2 1520 246 20 6 chr11 52272243 52272660 -96510812 + L1M4c LINE L1 2714 3395 -4171 1080 237 41 11 chr11 52272701 52273271 -96510201 + L1MB2 LINE L1 3214 3805 -3760 5231 212 52 25 chr11 52273275 52275501 -96507971 + L1MB2 LINE L1 5292 7587 -3 1433 246 114 27 chr11 52275575 52276423 -96507049 - L1M4 LINE L1 -2845 3301 2380 886 283 70 45 chr11 52276477 52277060 -96506412 + L1M4c LINE L1 5170 5767 -1798 240 333 0 0 chr11 52277065 52277131 -96506341 + MER96 DNA MER1_type? 11 76 -99 22 35 0 0 chr11 52277147 52277176 -96506296 + AT_rich Low_complexity Low_complexity 1 29 0 320 314 25 0 chr11 52277320 52277438 -96506034 + L1ME1 LINE L1 6041 6161 -5 232 286 135 30 chr11 52277715 52277848 -96505624 + MIR SINE MIR 19 165 -97 219 191 16 63 chr11 52277889 52277952 -96505520 + MIR SINE MIR 114 173 -89 433 349 41 6 chr11 52278291 52278463 -96505009 + MER5A DNA MER1_type 7 184 -5 468 286 97 56 chr11 52278667 52278936 -96504536 - L2 LINE L2 -5 3308 3029 210 150 50 33 chr11 52279666 52279726 -96503746 + (TATG)n Simple_repeat Simple_repeat 2 62 0 25 31 0 0 chr11 52279731 52279763 -96503709 + AT_rich Low_complexity Low_complexity 1 32 0 1709 156 54 3 chr11 52279911 52280206 -96503266 + AluJb SINE Alu 1 310 -2 2209 101 0 31 chr11 52280520 52280837 -96502635 - AluSx SINE Alu -3 309 3 2112 112 3 0 chr11 52281719 52282013 -96501459 - AluSg1 SINE Alu -2 307 13 1866 311 38 28 chr11 52284355 52285178 -96498294 + L1MEc LINE L1 20 850 -5546 290 291 25 0 chr11 52286129 52286208 -96497264 + L2 LINE L2 3233 3313 0 452 345 59 8 chr11 52287832 52288070 -96495402 - MIR SINE MIR -5 257 8 735 182 8 0 chr11 52288535 52288667 -96494805 + FLAM_C SINE Alu 3 135 -8 363 328 46 0 chr11 52288877 52289008 -96494464 - MIR SINE MIR -7 255 119 320 228 21 83 chr11 52289231 52289376 -96494096 - MLT1L LTR MaLR 0 615 480 545 286 63 39 chr11 52289539 52289794 -96493678 - MIR SINE MIR 0 262 2 180 324 44 0 chr11 52290658 52290726 -96492746 - L2 LINE L2 -1 3312 3242 1780 120 33 4 chr11 52291154 52291459 -96492013 - AluSx SINE Alu 0 313 1 758 237 27 23 chr11 52291546 52291765 -96491707 - MLT1F1 LTR MaLR 0 567 348 234 0 0 0 chr11 52291789 52291815 -96491657 + (GA)n Simple_repeat Simple_repeat 1 26 0 618 251 6 24 chr11 52291820 52291987 -96491485 - MLT1F1 LTR MaLR -378 164 1 300 364 12 6 chr11 52292309 52292471 -96491001 - MLT1-int LTR MaLR -491 880 718 247 297 69 48 chr11 52292664 52292809 -96490663 - MLT1-int LTR MaLR -766 605 458 1253 234 176 19 chr11 52292915 52293381 -96490091 - MLT1F LTR MaLR -1 541 3 253 335 45 28 chr11 52293721 52293897 -96489575 - MIR SINE MIR -6 256 78 453 332 47 37 chr11 52293917 52294239 -96489233 + L1ME LINE L1 56 380 -6016 4266 200 52 13 chr11 52294256 52295115 -96488357 + MER54A LTR ERVL 9 901 0 1757 269 60 19 chr11 52295134 52295932 -96487540 + L1ME LINE L1 390 1220 -5176 560 299 37 23 chr11 52296008 52296356 -96487116 + L1ME LINE L1 1407 1759 -4637 1827 269 96 24 chr11 52296534 52297960 -96485512 + L1ME LINE L1 1852 3341 -2874 1232 132 11 0 chr11 52298156 52298346 -96485126 - HSMAR1 DNA Mariner 0 1287 1096 2058 203 2 0 chr11 52298349 52298757 -96484715 - L1P LINE L1 -3787 2359 1951 1237 273 72 17 chr11 52298753 52299606 -96483866 + L1ME LINE L1 4914 5815 -420 * 255 250 36 0 chr11 52299610 52299694 -96483778 - L1MC4a LINE L1 -1804 6004 5918 624 163 0 49 chr11 52299708 52299831 -96483641 - Tigger2a DNA MER2_type -317 117 1 242 128 43 0 chr11 52299831 52299878 -96483594 + (TATATG)n Simple_repeat Simple_repeat 4 52 0 264 266 0 21 chr11 52299878 52299972 -96483500 - L1MC4 LINE L1 -1337 6705 6614 228 194 32 16 chr11 52299917 52299979 -96483493 + L1MCa LINE L1 2006 2068 -4358 * 600 200 0 0 chr11 52299979 52300104 -96483368 + (TA)n Simple_repeat Simple_repeat 2 126 0 239 143 0 0 chr11 52300104 52300153 -96483319 + LTR66 LTR ERVL 394 442 -168 319 364 58 12 chr11 52300386 52300644 -96482828 - L1M4 LINE L1 -1096 5050 4781 9317 146 70 11 chr11 52301381 52303008 -96480464 + Tigger1 DNA MER2_type 273 1994 -424 3636 24 0 0 chr11 52303108 52303580 -96479892 + L1PA3 LINE L1 5709 6180 0 365 190 50 45 chr11 52303860 52304039 -96479433 + (TA)n Simple_repeat Simple_repeat 1 180 0 200 382 15 0 chr11 52304749 52304817 -96478655 + L3b LINE CR1 1506 1574 -9 369 291 138 16 chr11 52305381 52305570 -96477902 - MIR SINE MIR -43 219 8 416 252 129 0 chr11 52305870 52306017 -96477455 + MIR SINE MIR 97 262 0 21 36 0 0 chr11 52306363 52306391 -96477081 + AT_rich Low_complexity Low_complexity 1 28 0 2665 195 19 9 chr11 52306659 52307222 -96476250 - L1MC3 LINE L1 0 7785 7217 1684 154 7 41 chr11 52307280 52307593 -96475879 + AluSx SINE Alu 1 303 0 220 324 14 27 chr11 52308069 52308143 -96475329 - MIR SINE MIR -111 97 25 322 285 135 36 chr11 52308632 52308825 -96474647 - MIR SINE MIR -11 251 40 184 260 137 0 chr11 52309604 52309677 -96473795 + MIR SINE MIR 91 173 -89 2971 124 58 10 chr11 52309827 52310311 -96473161 - L1PA16 LINE L1 -84 6082 5576 826 288 89 78 chr11 52310316 52310789 -96472683 - L1PA13 LINE L1 -6309 478 1 391 336 186 23 chr11 52310890 52311325 -96472147 + L2 LINE L2 2808 3313 0 258 339 68 25 chr11 52311573 52311853 -96471619 - L1MC4a LINE L1 -1887 5921 5630 26 82 0 0 chr11 52312102 52312163 -96471309 + AT_rich Low_complexity Low_complexity 1 61 0 22 56 0 0 chr11 52312299 52312335 -96471137 + AT_rich Low_complexity Low_complexity 1 36 0 210 150 10 80 chr11 52312437 52312537 -96470935 + A-rich Low_complexity Low_complexity 4 96 0 3273 202 78 22 chr11 52312555 52313477 -96469995 - L1 LINE L1 -2194 3952 2979 * 14445 37 1 1 chr11 52313470 52315230 -96468242 - L1P LINE L1 -846 5300 3540 4767 37 0 0 chr11 52315225 52315794 -96467678 + L1PA4 LINE L1 5446 6014 -141 * 2329 178 44 0 chr11 52315925 52316353 -96467119 + Tigger1 DNA MER2_type 1972 2418 0 967 27 0 0 chr11 52317379 52317490 -96465982 - L1PA5 LINE L1 -1526 4620 4510 7054 47 7 2 chr11 52317490 52319024 -96464448 + L1PA5 LINE L1 4613 6151 -3 189 0 0 0 chr11 52319024 52319045 -96464427 + (TA)n Simple_repeat Simple_repeat 1 21 0 200 308 88 11 chr11 52319558 52319649 -96463823 - MIR SINE MIR -95 113 16 181 308 48 39 chr11 52320012 52320116 -96463356 + MIR SINE MIR 20 124 -138 9078 175 49 25 chr11 52320241 52323280 -96460192 - L1MA6 LINE L1 -1 7718 4603 1994 130 63 14 chr11 52323280 52323627 -96459845 - THE1B LTR MaLR 0 364 1 3140 232 46 52 chr11 52323660 52325395 -96458077 - L1MA6 LINE L1 -3161 4404 2689 1098 263 71 74 chr11 52325402 52326049 -96457423 - L1MA6 LINE L1 -4137 2428 1784 1086 325 15 32 chr11 52327053 52327517 -96455955 - L1MA6 LINE L1 -5490 1996 1541 279 266 53 11 chr11 52327742 52327836 -96455636 + LTR37B LTR ERV1 2 99 -369 902 208 50 15 chr11 52328076 52328336 -96455136 + LTR37B LTR ERV1 198 466 -2 1475 187 40 75 chr11 52329371 52329772 -96453700 + MLT1B LTR MaLR 1 387 -3 41 21 0 0 chr11 52330151 52330199 -96453273 + AT_rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr11 52330525 52330547 -96452925 + AT_rich Low_complexity Low_complexity 1 22 0 304 231 0 15 chr11 52331347 52331412 -96452060 - MIR SINE MIR -3 259 196 369 288 54 0 chr11 52331415 52331526 -96451946 + MLT1J LTR MaLR 1 117 -394 2385 157 42 0 chr11 52331963 52332434 -96451038 - L1 LINE L1 -1561 4585 4095 3779 173 37 18 chr11 52332435 52332904 -96450568 + L1MA7 LINE L1 4547 5006 -1285 3358 134 11 0 chr11 52332904 52333435 -96450037 + L1PB1 LINE L1 5597 6148 -3 3779 173 37 18 chr11 52333435 52334308 -96449164 + L1MA7 LINE L1 5006 5903 -388 1040 210 15 0 chr11 52334437 52334637 -96448835 + MLT1B LTR MaLR 188 390 0 1213 262 103 56 chr11 52334655 52335691 -96447781 + L1MEc LINE L1 887 1971 -4425 1139 194 5 9 chr11 52335716 52335927 -96447545 + AluJo SINE Alu 84 293 -19 242 188 21 0 chr11 52335949 52335997 -96447475 + L1MEc LINE L1 2019 2067 -4329 646 276 69 17 chr11 52335997 52336171 -96447301 - MER5A DNA MER1_type -3 186 4 394 268 62 31 chr11 52336175 52336399 -96447073 + L1MEc LINE L1 2058 2288 -4108 * 2231 239 42 16 chr11 52336366 52337051 -96446421 + L1MEc LINE L1 2507 3209 -3006 37 23 0 0 chr11 52337288 52337332 -96446140 + AT_rich Low_complexity Low_complexity 1 44 0 212 273 91 53 chr11 52337978 52338110 -96445362 + L3b LINE CR1 1304 1440 -143 318 355 99 29 chr11 52338286 52338458 -96445014 + MIR3 SINE MIR 23 206 -2 365 311 74 0 chr11 52338573 52338763 -96444709 + L1ME LINE L1 5603 5806 -315 273 289 0 0 chr11 52338945 52339021 -96444451 + (CA)n Simple_repeat Simple_repeat 1 76 0 236 276 65 89 chr11 52339984 52340107 -96443365 + MER5B DNA MER1_type 2 121 -57 1430 206 88 47 chr11 52340127 52340750 -96442722 + Charlie2 DNA MER1_type 2180 2828 -34 26 30 0 0 chr11 52341358 52341391 -96442081 + AT_rich Low_complexity Low_complexity 1 33 0 324 303 91 8 chr11 52342533 52342665 -96440807 + MIR SINE MIR 120 262 0 1837 182 9 0 chr11 52343776 52344111 -96439361 - L1MB3 LINE L1 -210 5973 5636 23 0 0 0 chr11 52344122 52344145 -96439327 + AT_rich Low_complexity Low_complexity 1 23 0 985 339 22 38 chr11 52344201 52344697 -96438775 + L2 LINE L2 2826 3313 0 305 215 237 0 chr11 52344718 52344853 -96438619 + L1MC/D LINE L1 5666 5832 -1976 296 390 59 12 chr11 52346139 52346308 -96437164 - L3b LINE CR1 -14 1569 1393 2004 130 10 0 chr11 52346704 52347003 -96436469 - AluSx SINE Alu -10 302 1 535 290 103 18 chr11 52347075 52347347 -96436125 + L2 LINE L2 3019 3313 0 393 220 73 60 chr11 52348430 52348580 -96434892 + MLT1J LTR MaLR 13 164 -347 255 31 0 0 chr11 52348613 52348645 -96434827 + (CA)n Simple_repeat Simple_repeat 2 33 0 243 250 16 16 chr11 52349616 52349680 -96433792 + MIR SINE MIR 196 259 -3 26 30 0 0 chr11 52349684 52349717 -96433755 + AT_rich Low_complexity Low_complexity 1 33 0 1473 185 43 4 chr11 52349847 52350123 -96433349 + AluJo SINE Alu 1 287 -25 335 298 89 24 chr11 52350200 52350368 -96433104 - MIR SINE MIR -14 248 70 571 233 96 7 chr11 52350682 52350828 -96432644 - MER5A DNA MER1_type -3 186 28 1211 200 30 22 chr11 52350877 52351107 -96432365 + Tigger5 DNA MER2_type 1 232 -2091 546 143 38 19 chr11 52351125 52351230 -96432242 - L1PA16 LINE L1 -131 6035 5929 2264 207 37 4 chr11 52351244 52351752 -96431720 + L1 LINE L1 3868 4392 -1754 264 30 0 0 chr11 52352033 52352066 -96431406 + (A)n Simple_repeat Simple_repeat 1 33 0 337 343 76 59 chr11 52353234 52353590 -96429882 + L2 LINE L2 2433 2794 -520 587 196 0 0 chr11 52353596 52353698 -96429774 + AluJ/FLAM SINE Alu 1 102 -210 2127 137 3 0 chr11 52353738 52354045 -96429427 + AluSx SINE Alu 1 308 -4 850 186 6 0 chr11 52354082 52354238 -96429234 + FRAM SINE Alu 1 157 -19 665 256 128 5 chr11 52354396 52354599 -96428873 + MIR SINE MIR 35 262 0 1963 129 4 0 chr11 52354617 52354924 -96428548 + AluSg SINE Alu 1 308 0 11817 139 25 40 chr11 52356403 52357437 -96426035 + Tigger1 DNA MER2_type 307 1355 -1063 2266 182 2 9 chr11 52357437 52357877 -96425595 + L1PB4 LINE L1 5716 6152 -4 11817 139 25 40 chr11 52357877 52358408 -96425064 + Tigger1 DNA MER2_type 1355 1892 -526 217 0 29 29 chr11 52358408 52358442 -96425030 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1878 130 0 0 chr11 52358445 52358706 -96424766 - AluSx SINE Alu -30 282 22 11817 139 25 40 chr11 52358706 52359279 -96424193 + Tigger1 DNA MER2_type 1894 2418 0 212 139 0 23 chr11 52360781 52360824 -96422648 + (TATG)n Simple_repeat Simple_repeat 3 44 0 205 244 37 0 chr11 52360846 52360928 -96422544 + (TA)n Simple_repeat Simple_repeat 1 85 0 189 154 0 0 chr11 52360970 52361009 -96422463 + (CATATA)n Simple_repeat Simple_repeat 3 41 0 21 36 0 0 chr11 52361014 52361042 -96422430 + AT_rich Low_complexity Low_complexity 1 28 0 1147 305 43 27 chr11 52361092 52361676 -96421796 + L1ME3A LINE L1 5353 5945 -225 253 341 12 0 chr11 52361956 52362041 -96421431 + GA-rich Low_complexity Low_complexity 2 87 0 232 222 0 37 chr11 52362349 52362403 -96421069 + L2 LINE L2 3258 3309 -4 21 0 0 0 chr11 52362952 52362973 -96420499 + AT_rich Low_complexity Low_complexity 1 21 0 2343 102 0 3 chr11 52363677 52363991 -96419481 + AluSq SINE Alu 1 313 0 26 50 0 0 chr11 52364052 52364092 -96419380 + AT_rich Low_complexity Low_complexity 1 40 0 580 108 0 0 chr11 52364952 52365035 -96418437 - AluSg/x SINE Alu -13 296 214 879 150 52 6 chr11 52365898 52366071 -96417401 + L1MA9 LINE L1 6130 6310 -2 5440 104 9 19 chr11 52366255 52367111 -96416361 + L1PB2 LINE L1 5224 6071 -80 1304 195 77 11 chr11 52367662 52367923 -96415549 + AluJo SINE Alu 1 278 -34 186 43 0 0 chr11 52367923 52367946 -96415526 + (TC)n Simple_repeat Simple_repeat 2 24 0 227 143 0 0 chr11 52367946 52367988 -96415484 - LTR66 LTR ERVL -175 435 394 241 184 0 20 chr11 52367988 52368037 -96415435 + (CATATA)n Simple_repeat Simple_repeat 6 53 0 187 355 13 0 chr11 52368548 52368624 -96414848 - MIR SINE MIR -66 142 66 1536 174 9 50 chr11 52370077 52370399 -96413073 + AluJb SINE Alu 1 309 -3 256 219 31 0 chr11 52370904 52370968 -96412504 + L1MC3 LINE L1 6581 6646 -1139 216 0 0 0 chr11 52371241 52371265 -96412207 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 254 401 39 16 chr11 52371353 52371535 -96411937 + L2 LINE L2 2633 2818 -496 25 75 0 0 chr11 52371820 52371873 -96411599 + AT_rich Low_complexity Low_complexity 1 53 0 1168 199 52 131 chr11 52372058 52372446 -96411026 - MLT1A2 LTR MaLR -15 359 3 370 271 16 10 chr11 52372453 52372583 -96410889 + MER63 DNA MER1_type 693 1683 -5 183 232 0 36 chr11 52372587 52372643 -96410829 + L2 LINE L2 1785 1838 -1476 21 36 0 0 chr11 52372703 52372731 -96410741 + AT_rich Low_complexity Low_complexity 1 28 0 372 318 98 8 chr11 52372848 52373084 -96410388 - LTR33A LTR ERVL 0 523 267 443 264 18 18 chr11 52373121 52373231 -96410241 + L2 LINE L2 3190 3299 -14 243 0 0 0 chr11 52373447 52373474 -96409998 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 553 241 212 25 chr11 52377833 52378107 -96405365 + MER46C DNA MER2_type 3 327 -11 198 264 273 35 chr11 52378122 52378312 -96405160 - MIR SINE MIR -5 257 26 47 61 0 0 chr11 52378850 52378932 -96404540 + AT_rich Low_complexity Low_complexity 1 82 0 243 0 0 0 chr11 52378973 52379000 -96404472 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1865 140 0 7 chr11 52379006 52379284 -96404188 - AluSx SINE Alu -36 276 1 1065 162 0 11 chr11 52380269 52380282 -96403190 + AluSg/x SINE Alu 122 134 -178 2105 124 0 10 chr11 52380282 52380589 -96402883 + AluY SINE Alu 1 304 -7 1065 162 0 11 chr11 52380589 52380754 -96402718 + AluSg/x SINE Alu 134 298 -14 22 70 0 0 chr11 52381314 52381357 -96402115 + AT_rich Low_complexity Low_complexity 1 43 0 200 388 121 51 chr11 52381882 52382294 -96401178 + L2 LINE L2 2828 3268 -4 235 258 0 45 chr11 52382394 52382460 -96401012 - L2 LINE L2 0 3313 3251 371 322 63 79 chr11 52382698 52383127 -96400345 + HAL1 LINE L1 21 442 -2065 1804 240 35 7 chr11 52383230 52383684 -96399788 + L2 LINE L2 2319 2785 -529 998 278 146 9 chr11 52383692 52384117 -96399355 - L2 LINE L2 -1025 2289 1807 1982 115 163 42 chr11 52384943 52385343 -96398129 + LTR7 LTR ERV1 1 448 -2 13505 135 9 27 chr11 52385346 52388061 -96395411 + HERVH LTR ERV1 2 2987 -4726 2747 138 2 5 chr11 52388055 52388504 -96394968 + HERVH LTR ERV1 3140 3587 -4126 * 7630 135 8 6 chr11 52388498 52389901 -96393571 + HERVH LTR ERV1 3806 5286 -1805 2248 174 9 5 chr11 52389892 52390317 -96393155 + HERVH LTR ERV1 5590 6016 -1697 * 3836 88 13 11 chr11 52390310 52390866 -96392606 + HERVH LTR ERV1 7157 7713 0 2116 105 78 5 chr11 52390866 52391233 -96392239 + LTR7 LTR ERV1 1 450 0 563 333 58 24 chr11 52391958 52392340 -96391132 + LTR16A LTR ERVL 55 449 -1 484 288 65 31 chr11 52393403 52393632 -96389840 + MIR SINE MIR 1 237 -25 297 308 23 93 chr11 52394783 52394997 -96388475 - L2 LINE L2 -102 3170 2972 1543 167 67 11 chr11 52395122 52395404 -96388068 + AluJo SINE Alu 11 308 -4 213 121 0 0 chr11 52395565 52395598 -96387874 + (TTCTCC)n Simple_repeat Simple_repeat 4 36 0 192 111 0 0 chr11 52395592 52395628 -96387844 + (TTCC)n Simple_repeat Simple_repeat 4 39 0 * 945 252 33 0 chr11 52396707 52396917 -96386555 + MER20 DNA MER1_type 3 219 0 315 333 102 53 chr11 52396951 52397197 -96386275 - L3 LINE CR1 -156 1421 1164 322 301 141 39 chr11 52397275 52397481 -96385991 - MIR SINE MIR -16 246 20 252 115 39 19 chr11 52397905 52397957 -96385515 + L1MC5 LINE L1 7855 7907 -54 9231 68 2 4 chr11 52398119 52400113 -96383359 - L1PA6 LINE L1 0 6154 4163 14820 72 1 1 chr11 52400115 52402096 -96381376 + L1PA6 LINE L1 2166 4146 -2000 369 312 45 6 chr11 52402406 52402563 -96380909 + L1MC4a LINE L1 5739 5901 -1907 22 0 0 0 chr11 52402736 52402758 -96380714 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 52403043 52403064 -96380408 + AT_rich Low_complexity Low_complexity 1 21 0 1667 186 0 14 chr11 52403064 52403360 -96380112 - AluJo SINE Alu -20 292 1 25 51 0 0 chr11 52404070 52404109 -96379363 + AT_rich Low_complexity Low_complexity 1 39 0 234 200 50 0 chr11 52404403 52404463 -96379009 + (TA)n Simple_repeat Simple_repeat 2 64 0 29 47 0 0 chr11 52404513 52404556 -96378916 + AT_rich Low_complexity Low_complexity 1 43 0 219 372 41 0 chr11 52404847 52404968 -96378504 + MIR SINE MIR 66 191 -71 21 0 0 0 chr11 52405016 52405037 -96378435 + AT_rich Low_complexity Low_complexity 1 21 0 183 216 20 20 chr11 52405113 52405164 -96378308 - MIR3 SINE MIR -32 176 126 266 328 139 0 chr11 52405284 52405406 -96378066 + MIR SINE MIR 47 185 -77 27 49 0 0 chr11 52405526 52405567 -96377905 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr11 52406131 52406152 -96377320 + AT_rich Low_complexity Low_complexity 1 21 0 180 77 0 0 chr11 52406205 52406231 -96377241 + (TTTTTG)n Simple_repeat Simple_repeat 1 26 0 1810 72 4 17 chr11 52407106 52407342 -96376130 + AluSp SINE Alu 64 296 -17 559 276 73 21 chr11 52408133 52408325 -96375147 - MIR SINE MIR -56 206 5 276 199 53 114 chr11 52408426 52408557 -96374915 - MIR SINE MIR -59 203 81 297 0 0 0 chr11 52408667 52408700 -96374772 + (TG)n Simple_repeat Simple_repeat 2 34 0 323 200 89 0 chr11 52409038 52409128 -96374344 + L1 LINE L1 4729 4826 -1320 198 0 0 0 chr11 52409326 52409348 -96374124 + (A)n Simple_repeat Simple_repeat 1 22 0 199 91 23 23 chr11 52409878 52409922 -96373550 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 431 284 43 26 chr11 52410378 52410494 -96372978 + L2 LINE L2 3186 3303 -10 769 238 6 12 chr11 52410983 52411151 -96372321 + MER45A DNA AcHobo 12 178 0 543 223 18 0 chr11 52412200 52412312 -96371160 + FLAM_C SINE Alu 3 116 -27 242 73 24 0 chr11 52412312 52412353 -96371119 + (TAAAA)n Simple_repeat Simple_repeat 2 43 0 6441 159 10 2 chr11 52412864 52413877 -96369595 + L1MA3 LINE L1 320 1340 -6225 3144 195 16 8 chr11 52413874 52414913 -96368559 + L1MA3 LINE L1 3339 4385 -3180 * 4978 146 28 7 chr11 52414892 52416205 -96367267 + L1MA3 LINE L1 6346 7719 0 36 70 0 0 chr11 52416885 52416956 -96366516 + AT_rich Low_complexity Low_complexity 1 71 0 579 273 68 34 chr11 52417274 52417440 -96366032 + MIR SINE MIR 30 206 -56 198 0 0 0 chr11 52417440 52417462 -96366010 + (TG)n Simple_repeat Simple_repeat 2 23 0 579 273 68 34 chr11 52417462 52417500 -96365972 + MIR SINE MIR 206 241 -21 375 167 15 0 chr11 52418401 52418467 -96365005 - MER94 DNA DNA -63 71 5 180 0 0 0 chr11 52419624 52419644 -96363828 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 293 263 186 0 chr11 52420013 52420169 -96363303 - MIR SINE MIR -7 255 71 353 312 168 0 chr11 52420548 52420680 -96362792 + MIR SINE MIR 2 171 -91 267 31 0 0 chr11 52420680 52420712 -96362760 + (TAA)n Simple_repeat Simple_repeat 2 33 0 353 312 168 0 chr11 52420712 52420752 -96362720 + MIR SINE MIR 171 203 -59 180 328 39 31 chr11 52420858 52420986 -96362486 + L3 LINE CR1 1273 1401 -176 317 310 62 31 chr11 52422341 52422470 -96361002 + MIR SINE MIR 3 135 -127 2561 93 35 3 chr11 52422470 52422837 -96360635 - L1P LINE L1 -1772 4374 3996 306 288 71 43 chr11 52422877 52423061 -96360411 + MER112 DNA MER1_type 67 255 -5 253 365 114 24 chr11 52423061 52423228 -96360244 - MIR SINE MIR -80 182 1 1667 158 71 46 chr11 52424043 52424409 -96359063 + THE1C LTR MaLR 1 375 0 1412 204 58 16 chr11 52424453 52424958 -96358514 - MER67C LTR ERV1 -22 688 67 331 294 111 49 chr11 52425004 52425310 -96358162 - L1M4 LINE L1 -1192 4954 4630 25 31 0 0 chr11 52425795 52425827 -96357645 + AT_rich Low_complexity Low_complexity 1 32 0 * 391 274 48 48 chr11 52425804 52425990 -96357482 - HAL1 LINE L1 -1 2506 2321 1499 214 7 7 chr11 52425995 52426290 -96357182 + AluJo SINE Alu 3 297 -15 25 31 0 0 chr11 52426955 52426987 -96356485 + AT_rich Low_complexity Low_complexity 1 32 0 1612 146 0 0 chr11 52427084 52427317 -96356155 + AluSx SINE Alu 48 280 -32 203 88 29 0 chr11 52427318 52427352 -96356120 + (GGGGA)n Simple_repeat Simple_repeat 5 39 0 208 376 75 0 chr11 52428944 52429037 -96354435 + MER91A DNA MER1_type 94 193 -3 225 370 62 20 chr11 52429057 52429203 -96354269 - MIR SINE MIR -108 154 3 528 324 91 17 chr11 52429874 52430170 -96353302 - L2 LINE L2 -8 3305 2988 1566 225 62 15 chr11 52430176 52430581 -96352891 + MER63B DNA MER1_type 11 434 -2 1348 186 31 156 chr11 52430715 52431227 -96352245 + MLT1C LTR MaLR 1 448 -19 2521 170 76 49 chr11 52431229 52431766 -96351706 + MLT2B3 LTR ERVL 1 534 -20 268 145 16 16 chr11 52431767 52431829 -96351643 + (TA)n Simple_repeat Simple_repeat 1 62 0 269 167 0 0 chr11 52431835 52431883 -96351589 + MLT2B1 LTR ERVL 466 513 -7 1042 281 82 42 chr11 52432400 52432827 -96350645 - L2 LINE L2 -4 3309 2866 225 240 20 0 chr11 52433141 52433191 -96350281 + C-rich Low_complexity Low_complexity 5 55 0 1924 122 40 43 chr11 52433568 52433944 -96349528 + THE1C LTR MaLR 1 375 0 26 50 0 0 chr11 52434576 52434616 -96348856 + AT_rich Low_complexity Low_complexity 1 40 0 1894 157 121 21 chr11 52434923 52435311 -96348161 - MSTA LTR MaLR 0 428 2 1119 285 81 67 chr11 52435756 52436675 -96346797 - L1M4 LINE L1 -1497 4649 3711 2442 62 3 3 chr11 52436675 52436981 -96346491 - AluY SINE Alu -5 306 1 1119 285 81 67 chr11 52436981 52437192 -96346280 - L1M4 LINE L1 -2435 3711 3504 2445 285 58 31 chr11 52437234 52438045 -96345427 + L1PA15 LINE L1 1 789 -6008 2292 127 36 8 chr11 52438045 52438408 -96345064 - THE1C LTR MaLR -2 373 1 2445 285 58 31 chr11 52438408 52439008 -96344464 + L1PA15 LINE L1 789 3938 -2859 4962 172 41 89 chr11 52439010 52440463 -96343009 + L1PA15 LINE L1 4990 6304 -512 2415 75 7 0 chr11 52440463 52440768 -96342704 + AluY SINE Alu 1 307 -4 4962 172 41 89 chr11 52440768 52441258 -96342214 + L1PA15 LINE L1 6304 6816 0 1290 233 31 7 chr11 52441297 52441589 -96341883 + AluJb SINE Alu 1 299 -3 616 268 16 0 chr11 52441657 52441840 -96341632 - L1ME3A LINE L1 -188 6051 5866 321 150 0 33 chr11 52441860 52441920 -96341552 - L1ME3A LINE L1 -734 5501 5444 326 308 19 42 chr11 52441938 52442054 -96341418 - L1ME3A LINE L1 -919 5296 5179 1924 120 32 3 chr11 52442054 52442337 -96341135 - AluSg SINE Alu -17 293 3 326 308 19 42 chr11 52442337 52442432 -96341040 - L1ME3A LINE L1 -1036 5179 5090 3641 92 64 23 chr11 52442432 52443008 -96340464 + MER4A LTR ERV1 1 600 0 326 308 19 42 chr11 52443008 52443055 -96340417 - L1ME3A LINE L1 -1125 5090 5043 298 253 27 0 chr11 52443104 52443179 -96340293 - L1ME3A LINE L1 -3316 2899 2823 1087 106 0 12 chr11 52443272 52443433 -96340039 - AluYa5 SINE Alu 0 311 153 433 300 128 13 chr11 52443451 52443678 -96339794 - L1ME3A LINE L1 -3997 2399 2147 23 0 0 0 chr11 52443833 52443856 -96339616 + AT_rich Low_complexity Low_complexity 1 23 0 1685 122 29 11 chr11 52443979 52444286 -96339186 + AluY SINE Alu 1 312 0 2311 204 95 34 chr11 52444367 52445050 -96338422 - MER50 LTR ERV1 0 734 10 186 333 194 16 chr11 52445416 52445545 -96337927 + L2 LINE L2 3117 3268 -4 2084 133 3 0 chr11 52445737 52446039 -96337433 + AluSq SINE Alu 1 303 -10 895 208 5 9 chr11 52446537 52446753 -96336719 + L1MA7 LINE L1 6076 6290 -1 186 133 0 0 chr11 52446763 52446793 -96336679 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 189 0 0 0 chr11 52447014 52447035 -96336437 + (TA)n Simple_repeat Simple_repeat 1 21 0 384 22 0 0 chr11 52448146 52448191 -96335281 + (CA)n Simple_repeat Simple_repeat 2 46 0 201 213 0 0 chr11 52448200 52448247 -96335225 + (TA)n Simple_repeat Simple_repeat 2 48 0 24 0 0 0 chr11 52448389 52448413 -96335059 + AT_rich Low_complexity Low_complexity 1 24 0 180 365 0 63 chr11 52450362 52450425 -96333047 + L2 LINE L2 3138 3196 -76 572 331 127 15 chr11 52450666 52450998 -96332474 - L2 LINE L2 -6 3307 2939 378 0 0 0 chr11 52451755 52451797 -96331675 + (TG)n Simple_repeat Simple_repeat 2 43 0 21 0 0 0 chr11 52451969 52451990 -96331482 + AT_rich Low_complexity Low_complexity 1 21 0 610 202 0 0 chr11 52452080 52452189 -96331283 + FLAM_C SINE Alu 1 109 -34 23 33 0 0 chr11 52452207 52452237 -96331235 + AT_rich Low_complexity Low_complexity 1 30 0 265 239 34 11 chr11 52453289 52453424 -96330048 + (CAGAGA)n Simple_repeat Simple_repeat 1 138 0 264 364 39 26 chr11 52454628 52454782 -96328690 + MER20B DNA MER1_type 2 157 -626 4790 186 50 8 chr11 52454921 52456348 -96327124 + L1MA9 LINE L1 4821 6309 -3 370 214 110 98 chr11 52456556 52456616 -96326856 - MER5B DNA MER1_type -3 175 117 2701 19 0 3 chr11 52456616 52456928 -96326544 + AluYa5 SINE Alu 1 311 0 370 214 110 98 chr11 52456928 52457040 -96326432 - MER5B DNA MER1_type -61 117 1 219 69 0 0 chr11 52457100 52457129 -96326343 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 453 215 141 0 chr11 52457981 52458102 -96325370 + MIR SINE MIR 100 237 -25 23 33 0 0 chr11 52459517 52459547 -96323925 + AT_rich Low_complexity Low_complexity 1 30 0 242 222 12 62 chr11 52459588 52459669 -96323803 + MIR SINE MIR 176 252 -10 386 265 53 0 chr11 52459912 52460050 -96323422 + MIR3 SINE MIR 8 154 -54 395 299 121 62 chr11 52460070 52460294 -96323178 - MIR SINE MIR -6 256 20 205 268 14 42 chr11 52460679 52460750 -96322722 - MIR3 SINE MIR -53 155 87 231 289 53 0 chr11 52462175 52462251 -96321221 + L2 LINE L2 3234 3313 0 295 67 0 0 chr11 52462846 52462891 -96320581 - L1PA6 LINE L1 0 6154 6110 23 33 0 0 chr11 52463152 52463182 -96320290 + AT_rich Low_complexity Low_complexity 1 30 0 438 257 209 0 chr11 52464129 52464277 -96319195 - MIR SINE MIR -11 251 73 362 300 52 60 chr11 52465593 52465843 -96317629 + MER112 DNA MER1_type 2 249 -11 252 0 0 0 chr11 52465887 52465915 -96317557 + (TG)n Simple_repeat Simple_repeat 1 28 0 2047 122 0 7 chr11 52466720 52467006 -96316466 + AluSg SINE Alu 1 284 -26 321 325 92 39 chr11 52467316 52467666 -96315806 - L3 LINE CR1 -130 1447 1115 669 168 49 138 chr11 52467681 52467884 -96315588 - AluJo SINE Alu -37 275 91 208 350 57 41 chr11 52467933 52468056 -96315416 - MIR3 SINE MIR -2 206 82 221 0 0 33 chr11 52468215 52468245 -96315227 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1431 203 52 21 chr11 52468300 52468586 -96314886 + AluJo SINE Alu 2 296 -6 302 202 0 11 chr11 52468618 52468707 -96314765 + GA-rich Low_complexity Low_complexity 1 88 0 763 122 17 0 chr11 52469920 52470035 -96313437 - AluSp/q SINE Alu -12 301 185 272 357 47 16 chr11 52470225 52470354 -96313118 + MIR3 SINE MIR 22 154 -54 308 264 0 0 chr11 52471143 52471215 -96312257 - L2 LINE L2 0 3313 3242 253 349 0 0 chr11 52471675 52471761 -96311711 - MLT1H LTR MaLR -110 439 354 1567 151 7 72 chr11 52575473 52575765 -96207707 + AluSx SINE Alu 1 273 -39 221 119 24 0 chr11 52575765 52575807 -96207665 + GA-rich Low_complexity Low_complexity 1 43 0 588 29 0 0 chr11 52575822 52575892 -96207580 + (GAAA)n Simple_repeat Simple_repeat 4 73 0 1372 182 71 0 chr11 52578094 52578347 -96205125 + AluSg SINE Alu 1 271 -39 758 113 7 27 chr11 52578347 52578497 -96204975 + (GAAA)n Simple_repeat Simple_repeat 4 150 0 11719 100 18 0 chr11 52578680 52580427 -96203045 - L1P LINE L1 -4366 1780 2 8419 158 57 11 chr11 52580429 52582945 -96200527 - L1PBa LINE L1 -2927 3935 1312 934 211 33 0 chr11 52583165 52583345 -96200127 + AluJb SINE Alu 127 312 0 215 298 183 15 chr11 52583842 52583973 -96199499 + L2 LINE L2 3110 3262 -10 1043 158 11 6 chr11 52584261 52584444 -96199028 - L1PA16 LINE L1 -3 6163 5980 27 0 0 0 chr11 52584658 52584685 -96198787 + AT_rich Low_complexity Low_complexity 1 27 0 7354 43 0 2 chr11 52584685 52585931 -96197541 - L1PA4 LINE L1 -3 6152 4908 680 127 8 0 chr11 52586307 52586425 -96197047 + L1P LINE L1 5310 5428 -733 5210 99 21 9 chr11 52586425 52587171 -96196301 + SVA Other Other 632 1386 0 726 291 135 25 chr11 52587405 52587832 -96195640 + L2 LINE L2 2794 3255 -58 260 304 36 0 chr11 52588001 52588113 -96195359 - LTR67 LTR ERVL 0 557 442 1497 195 64 64 chr11 52588529 52589010 -96194462 - L1MA9 LINE L1 -38 6274 5794 189 107 36 18 chr11 52589015 52589071 -96194401 + (TATAA)n Simple_repeat Simple_repeat 4 60 0 222 184 10 68 chr11 52589093 52589196 -96194276 + (TATAA)n Simple_repeat Simple_repeat 5 101 0 2400 184 14 30 chr11 52589224 52590155 -96193317 - L1MA9 LINE L1 -544 5768 4859 2078 127 3 3 chr11 52590155 52590455 -96193017 + AluSx SINE Alu 1 300 -12 2400 184 14 30 chr11 52590455 52590580 -96192892 - L1MA9 LINE L1 -1453 4859 4734 1289 169 0 0 chr11 52590589 52590842 -96192630 - AluSg/x SINE Alu 0 339 87 252 277 36 54 chr11 52591254 52591366 -96192106 + MIR SINE MIR 136 245 -17 21 0 0 0 chr11 52591634 52591655 -96191817 + AT_rich Low_complexity Low_complexity 1 21 0 2480 77 0 3 chr11 52592205 52592515 -96190957 - AluSc SINE Alu 0 309 1 358 223 56 64 chr11 52592523 52592756 -96190716 - L1ME4a LINE L1 -185 5936 5706 2462 89 0 0 chr11 52593155 52593459 -96190013 + AluSx SINE Alu 1 304 -8 1049 307 68 14 chr11 52593630 52594070 -96189402 - LTR16B LTR ERVL 0 464 1 806 256 48 34 chr11 52594438 52594731 -96188741 + L1ME LINE L1 5447 5743 -421 572 241 307 3 chr11 52594882 52595227 -96188245 + SATR1 Satellite Satellite 6 455 -15 255 288 144 9 chr11 52595251 52595362 -96188110 + SATR1 Satellite Satellite 301 426 -44 936 195 286 29 chr11 52595402 52595984 -96187488 + SATR1 Satellite Satellite 1 731 -147 2189 92 3 0 chr11 52596447 52596740 -96186732 + AluSp SINE Alu 1 294 -19 1547 155 0 81 chr11 52602618 52602915 -96180557 + AluSx SINE Alu 1 273 -39 337 169 11 11 chr11 52602915 52603004 -96180468 + GA-rich Low_complexity Low_complexity 1 89 0 30223 49 2 1 chr11 52605138 52609914 -96173558 - L1PA6 LINE L1 -6 6148 1368 435 252 76 0 chr11 52610101 52610232 -96173240 + L1M4 LINE L1 2986 3126 -3020 3069 150 7 16 chr11 52610341 52610889 -96172583 - L1PBa LINE L1 -5687 1176 634 885 205 26 0 chr11 52610889 52611084 -96172388 - L1PBa LINE L1 -6663 200 1 2376 201 30 69 chr11 52611135 52611772 -96171700 - LTR9 LTR ERV1 0 612 1 2192 217 34 39 chr11 52611774 52612475 -96170997 - LTR9-int LTR ERV1 -1 6995 6298 * 9234 144 43 91 chr11 52612467 52614664 -96168808 - HUERS-P3b LTR ERV1 -2303 2914 1335 3232 192 53 15 chr11 52614664 52615330 -96168142 + LTR8 LTR ERV1 1 691 0 9234 144 43 91 chr11 52615330 52616025 -96167447 - HUERS-P3b LTR ERV1 -3882 1335 608 3932 193 41 37 chr11 52616029 52617674 -96165798 - HUERS-P3b LTR ERV1 -5694 1724 69 10124 132 24 76 chr11 52617775 52619916 -96163556 - L1M1 LINE L1 -4182 3383 1355 457 182 8 58 chr11 52619916 52620037 -96163435 - L1M1 LINE L1 -7410 155 41 4160 230 78 40 chr11 52620395 52621070 -96162402 + L1M4 LINE L1 281 929 -5717 1652 209 14 16 chr11 52621070 52621434 -96162038 - MLT1A1 LTR MaLR 0 365 3 4160 230 78 40 chr11 52621434 52622519 -96160953 + L1M4 LINE L1 929 2096 -4550 771 236 0 50 chr11 52622762 52623004 -96160468 + L1M4 LINE L1 2695 2924 -3720 938 168 15 35 chr11 52623010 52623207 -96160265 - MLT1A1 LTR MaLR -48 317 125 4632 211 39 29 chr11 52623220 52624652 -96158820 + L1M4 LINE L1 2933 4379 -2265 223 290 70 50 chr11 52626858 52626958 -96156514 + MIR SINE MIR 45 146 -62 388 314 29 0 chr11 52627387 52627524 -96155948 + MIR SINE MIR 122 262 0 21 36 0 0 chr11 52629151 52629179 -96154293 + AT_rich Low_complexity Low_complexity 1 28 0 373 291 129 37 chr11 52631142 52631383 -96152089 - LTR41 LTR ERVL -10 763 501 1791 120 7 3 chr11 52632778 52633061 -96150411 - L1PB1 LINE L1 -2 6149 5866 1629 171 43 14 chr11 52633149 52633494 -96149978 - L1MA9 LINE L1 -8 6304 5950 1026 273 109 14 chr11 52633751 52634165 -96149307 - LTR16A1 LTR ERVL -4 453 1 377 368 53 18 chr11 52634170 52634453 -96149019 + L2 LINE L2 2561 2853 -461 249 273 0 30 chr11 52634469 52634535 -96148937 + L2 LINE L2 3207 3270 -2 2302 110 0 0 chr11 52634674 52634982 -96148490 - AluSg SINE Alu -2 308 1 2846 16 3 0 chr11 52635052 52635369 -96148103 - AluYb8 SINE Alu 0 318 1 297 127 36 0 chr11 52635440 52635495 -96147977 + L1MA10 LINE L1 6265 6321 -13 36 0 0 0 chr11 52636169 52636205 -96147267 + AT_rich Low_complexity Low_complexity 1 36 0 278 248 89 0 chr11 52636205 52636306 -96147166 - L1MA9 LINE L1 -22 6290 6181 1332 187 11 30 chr11 52636308 52636575 -96146897 - L1MA9 LINE L1 -230 6082 5821 788 219 89 45 chr11 52636588 52637494 -96145978 - L1M4c LINE L1 -1099 6007 4995 436 275 50 33 chr11 52637566 52637797 -96145675 - L1M4c LINE L1 -2877 4229 3987 1978 114 33 0 chr11 52637797 52638120 -96145352 - AluSg SINE Alu 0 332 1 436 275 50 33 chr11 52638120 52638251 -96145221 - L1M4c LINE L1 -3119 3987 3860 2459 225 76 19 chr11 52638418 52639223 -96144249 - L1MB5 LINE L1 -226 5948 5097 464 176 0 0 chr11 52639382 52639473 -96143999 - L1MB5 LINE L1 -1597 4549 4459 743 144 16 8 chr11 52639504 52639629 -96143843 + L1P4 LINE L1 5475 5600 -566 358 294 7 7 chr11 52639637 52639790 -96143682 - L1PB4 LINE L1 -3 6153 6001 14565 55 5 1 chr11 52640040 52641917 -96141555 + L1P LINE L1 2817 4701 -1445 3574 199 51 1 chr11 52641943 52643183 -96140289 - L1MA9 LINE L1 -200 6112 4819 2280 250 78 49 chr11 52643179 52645155 -96138317 - L1M4c LINE L1 -4516 2521 934 * 912 245 28 18 chr11 52645193 52645461 -96138011 - L1M3c LINE L1 -5860 1177 21 2175 87 31 3 chr11 52645472 52645759 -96137713 - AluY SINE Alu -16 295 1 1426 225 31 7 chr11 52645759 52646182 -96137290 - L1M4 LINE L1 -814 5332 4900 441 263 0 0 chr11 52646578 52646692 -96136780 + L1P4 LINE L1 5487 5600 -566 1206 183 8 4 chr11 52646706 52646941 -96136531 - L1PB4 LINE L1 -10 6146 5911 1825 80 0 0 chr11 52646944 52647181 -96136291 + L1PA7 LINE L1 5918 6154 0 5294 182 55 33 chr11 52647214 52647342 -96136130 - L1PB4 LINE L1 -234 5922 5798 309 26 0 0 chr11 52647342 52647380 -96136092 + (TG)n Simple_repeat Simple_repeat 2 39 0 5294 182 55 33 chr11 52647380 52649149 -96134323 - L1PB4 LINE L1 -358 5798 3980 22298 83 81 86 chr11 52649176 52652332 -96131140 - L1P2 LINE L1 -338 5817 2312 2669 125 0 3 chr11 52652332 52652715 -96130757 - MER9 LTR ERVK -129 382 1 22298 83 81 86 chr11 52652715 52654093 -96129379 - L1P2 LINE L1 -3843 2312 928 3949 217 43 65 chr11 52654220 52654532 -96128940 - L1M4 LINE L1 -1344 4802 4484 2225 109 3 13 chr11 52654532 52654843 -96128629 - AluSp SINE Alu -5 308 1 3949 217 43 65 chr11 52654843 52655861 -96127611 - L1M4 LINE L1 -1662 4484 3502 831 151 59 7 chr11 52655862 52656014 -96127458 + MLT1A1 LTR MaLR 1 160 -205 808 181 32 13 chr11 52656015 52656170 -96127302 - L1MCa LINE L1 -5825 601 444 1722 184 46 65 chr11 52656302 52656736 -96126736 - L1MCa LINE L1 -6000 426 1 207 326 139 79 chr11 52656807 52657239 -96126233 + L2 LINE L2 2856 3313 0 22040 47 2 0 chr11 52657742 52661317 -96122155 + L1PA3 LINE L1 2595 6175 0 514 323 115 78 chr11 52662335 52663023 -96120449 - L2 LINE L2 -384 2930 2218 1288 242 20 70 chr11 52663148 52663545 -96119927 + MLT1B LTR MaLR 14 390 0 1651 182 17 8 chr11 52663547 52663905 -96119567 + MLT1B-int LTR MaLR 3 363 -1008 703 200 0 7 chr11 52664320 52664455 -96119017 + L1 LINE L1 4868 5001 -1145 211 313 125 8 chr11 52664455 52664583 -96118889 + L2 LINE L2 2935 3077 -195 604 327 112 20 chr11 52666393 52666844 -96116628 - L2 LINE L2 -344 2928 2434 320 350 70 7 chr11 52667024 52667167 -96116305 + L2 LINE L2 2927 3078 -194 1240 165 84 7 chr11 52667333 52667606 -96115866 + L1MA4 LINE L1 5825 6118 -182 300 316 101 25 chr11 52667644 52668081 -96115391 - L1P4 LINE L1 -441 5724 5255 230 239 52 30 chr11 52668271 52668405 -96115067 - L1 LINE L1 -1126 5020 4884 3523 58 5 9 chr11 52668638 52669069 -96114403 + SVA Other Other 958 1386 0 4258 121 34 31 chr11 52669071 52669815 -96113657 + L1PA13 LINE L1 5413 6158 -5 435 218 43 1 chr11 52670423 52670590 -96112882 - L1ME LINE L1 -549 5615 5391 484 250 55 0 chr11 52670639 52670803 -96112669 - L1ME LINE L1 -855 5291 5119 10374 184 41 72 chr11 52670808 52673624 -96109848 + L1MA2 LINE L1 2572 5300 -846 2132 145 0 0 chr11 52673624 52673928 -96109544 + AluSq SINE Alu 1 304 -9 10374 184 41 72 chr11 52673928 52673959 -96109513 + L1MA2 LINE L1 5300 5330 -816 4663 146 5 8 chr11 52673964 52674752 -96108720 + L1MA2 LINE L1 5519 6304 0 395 204 14 35 chr11 52674846 52674988 -96108484 + C-rich Low_complexity Low_complexity 3 141 0 998 181 0 6 chr11 52674989 52675171 -96108301 + L1 LINE L1 4833 5013 -1133 223 61 61 41 chr11 52675175 52675224 -96108248 + CT-rich Low_complexity Low_complexity 3 52 0 478 265 10 0 chr11 52675226 52675328 -96108144 - FLAM_A SINE Alu -36 106 4 752 146 14 35 chr11 52675375 52675519 -96107953 + THE1C-int LTR MaLR 1440 1580 0 2076 135 32 27 chr11 52675521 52675892 -96107580 + THE1C LTR MaLR 3 375 0 229 216 0 0 chr11 52678564 52678615 -96104857 + T-rich Low_complexity Low_complexity 1 51 0 1111 162 12 0 chr11 52678761 52678934 -96104538 - AluSg/x SINE Alu -7 305 131 625 248 21 110 chr11 52679318 52679600 -96103872 - MIR SINE MIR -1 261 5 27 29 0 0 chr11 52679733 52679767 -96103705 + AT_rich Low_complexity Low_complexity 1 34 0 198 323 32 0 chr11 52679827 52679889 -96103583 - MIR3 SINE MIR -27 181 118 206 281 58 66 chr11 52680526 52680647 -96102825 + L2 LINE L2 3150 3269 -44 730 161 0 0 chr11 52682786 52682916 -96100556 + L1P LINE L1 4735 4864 -1282 28 48 0 0 chr11 52683224 52683266 -96100206 + AT_rich Low_complexity Low_complexity 1 42 0 274 323 30 0 chr11 52684821 52684920 -96098552 - ERVL LTR ERVL -1090 4674 4573 285 241 133 25 chr11 52685037 52685195 -96098277 - ERVL LTR ERVL -1090 4395 4221 552 330 37 20 chr11 52685246 52685594 -96097878 - ERVL LTR ERVL -1631 4133 3780 1959 175 36 10 chr11 52685716 52686127 -96097345 - L1MA9 LINE L1 0 6312 5891 924 191 88 5 chr11 52686127 52686342 -96097130 + L1M2 LINE L1 5511 5743 -569 518 273 7 0 chr11 52686970 52687113 -96096359 - MER5A DNA MER1_type -40 149 6 2328 75 3 0 chr11 52688560 52688854 -96094618 + AluSp SINE Alu 1 295 -18 1514 158 8 45 chr11 52694683 52694948 -96088524 + AluSq SINE Alu 1 255 -58 385 138 25 0 chr11 52694960 52695040 -96088432 + GA-rich Low_complexity Low_complexity 1 82 0 1464 5 0 22 chr11 52695044 52695228 -96088244 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1361 195 99 0 chr11 52697450 52697778 -96085694 + AluSg SINE Alu 1 355 0 209 110 100 0 chr11 52699265 52699365 -96084107 + (TA)n Simple_repeat Simple_repeat 1 110 0 303 173 0 0 chr11 52699376 52699428 -96084044 - L1MC4 LINE L1 -1339 6703 6652 673 258 0 26 chr11 52699428 52699579 -96083893 - AluJo SINE Alu -39 273 127 317 310 67 27 chr11 52700296 52700524 -96082948 + L1MEc LINE L1 1449 1834 -4729 705 287 129 57 chr11 52700592 52701187 -96082285 - L1MCc LINE L1 -4997 1426 789 2840 70 5 0 chr11 52701374 52701748 -96081724 + L1PA7 LINE L1 5776 6151 -3 394 307 97 3 chr11 52702005 52702354 -96081118 - L1ME3A LINE L1 -192 5978 5597 479 296 90 23 chr11 52702360 52702814 -96080658 - L1ME3A LINE L1 -593 5569 5083 249 227 0 0 chr11 52702878 52702944 -96080528 - L1ME3A LINE L1 -1166 4980 4915 24 0 0 0 chr11 52704036 52704060 -96079412 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr11 52705718 52705739 -96077733 + AT_rich Low_complexity Low_complexity 1 21 0 251 130 19 0 chr11 52705902 52705956 -96077516 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 21 0 0 0 chr11 52707014 52707035 -96076437 + AT_rich Low_complexity Low_complexity 1 21 0 302 319 33 130 chr11 52707088 52707680 -96075792 - L2 LINE L2 -15 3298 2756 385 214 0 0 chr11 52708784 52708868 -96074604 - MLT2B3 LTR ERVL -470 84 1 21 0 0 0 chr11 52709091 52709112 -96074360 + AT_rich Low_complexity Low_complexity 1 21 0 4556 47 0 0 chr11 52709112 52709670 -96073802 - L1PA4 LINE L1 -2 6153 5596 3413 203 32 31 chr11 52711609 52712378 -96071094 - L1M1 LINE L1 -6747 818 49 22 0 0 0 chr11 52712730 52712752 -96070720 + AT_rich Low_complexity Low_complexity 1 22 0 1750 149 12 3 chr11 52714078 52714406 -96069066 - L1M1 LINE L1 -526 5774 5444 3176 184 148 11 chr11 52714591 52715332 -96068140 - MST-int LTR MaLR -45 1606 764 569 245 59 37 chr11 52715330 52715770 -96067702 - L1PA15-16 LINE L1 -5021 1182 690 * 378 358 52 47 chr11 52715987 52716219 -96067253 - L1M2 LINE L1 -5933 916 684 1765 285 169 16 chr11 52716477 52717299 -96066173 - L1M2 LINE L1 -5893 956 9 1350 254 42 36 chr11 52717348 52717773 -96065699 - L1M4 LINE L1 -1868 4278 3848 1726 172 10 7 chr11 52717773 52718070 -96065402 - AluJb SINE Alu -14 298 1 1350 254 42 36 chr11 52718070 52718247 -96065225 - L1M4 LINE L1 -2298 3848 3673 258 32 0 0 chr11 52718422 52718453 -96065019 + (TG)n Simple_repeat Simple_repeat 2 32 0 812 109 0 0 chr11 52718472 52718600 -96064872 + L1MA5A LINE L1 6164 6291 -6 394 215 73 8 chr11 52718622 52718773 -96064699 - L1M4 LINE L1 -742 5432 5266 766 292 39 16 chr11 52718999 52719543 -96063929 - L1M4 LINE L1 -2897 3249 2694 911 206 132 9 chr11 52719785 52720013 -96063459 - ERVL LTR ERVL -4846 918 663 561 274 92 58 chr11 52720157 52720592 -96062880 - LTR16A1 LTR ERVL 0 457 8 270 369 65 55 chr11 52720618 52720927 -96062545 + L2 LINE L2 2576 2887 -427 220 239 0 0 chr11 52720913 52720959 -96062513 + L2 LINE L2 3268 3313 0 * 2208 138 0 0 chr11 52721119 52721431 -96062041 - AluSx SINE Alu 0 312 1 225 302 20 74 chr11 52721512 52721714 -96061758 + L2 LINE L2 3123 3313 0 1851 133 57 0 chr11 52721795 52722074 -96061398 + AluSc SINE Alu 1 295 -14 300 213 75 0 chr11 52722958 52723038 -96060434 + MIR SINE MIR 119 204 -58 478 279 84 32 chr11 52725093 52725283 -96058189 - MIR SINE MIR 0 262 63 325 384 68 5 chr11 52725634 52725824 -96057648 + MIR SINE MIR 1 202 -60 214 274 0 63 chr11 52726208 52726303 -96057169 + MIR SINE MIR 96 184 -78 414 0 0 0 chr11 52726614 52726660 -96056812 + (CA)n Simple_repeat Simple_repeat 1 46 0 638 170 47 12 chr11 52727272 52727443 -96056029 - L1MA9 LINE L1 -9 6303 6127 6905 52 1 0 chr11 52727444 52728865 -96054607 - L1PA4 LINE L1 -6 6149 4712 13830 43 8 4 chr11 52728865 52730689 -96052783 + L1PA4 LINE L1 2418 4248 -1898 2716 43 0 0 chr11 52730689 52731011 -96052461 + L1PA4 LINE L1 5828 6151 -4 1991 166 10 0 chr11 52731052 52731359 -96052113 + AluSx SINE Alu 1 310 -2 1884 220 77 7 chr11 52731359 52731809 -96051663 + L1 LINE L1 3219 3719 -2427 239 0 32 0 chr11 52731809 52731840 -96051632 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1884 220 77 7 chr11 52731840 52731938 -96051534 + L1 LINE L1 3719 3809 -2337 1028 221 7 36 chr11 52731946 52732222 -96051250 + MER76 LTR ERV 421 688 0 495 213 22 0 chr11 52732223 52732359 -96051113 - L1M4 LINE L1 -1913 4233 4095 1573 154 11 50 chr11 52732360 52732639 -96050833 + AluJo SINE Alu 1 268 -44 1869 148 16 66 chr11 52732893 52733051 -96050421 + L1PA15 LINE L1 5818 5982 -183 2120 110 14 0 chr11 52733051 52733343 -96050129 + AluSx SINE Alu 3 298 -14 1869 148 16 66 chr11 52733343 52733549 -96049923 + L1PA15 LINE L1 5982 6164 -1 566 243 85 37 chr11 52733767 52734039 -96049433 - MLT1L LTR MaLR -327 288 4 297 326 23 0 chr11 52734245 52734374 -96049098 - MLT1L LTR MaLR -447 168 37 211 329 94 7 chr11 52734449 52734598 -96048874 + L2 LINE L2 1597 1758 -1556 * 474 216 81 0 chr11 52734574 52734685 -96048787 - MIR SINE MIR -64 198 79 444 267 91 28 chr11 52735338 52735514 -96047958 + MIR SINE MIR 6 192 -70 505 234 99 7 chr11 52735885 52736026 -96047446 - MIR SINE MIR -36 226 73 2163 123 7 0 chr11 52736039 52736339 -96047133 + AluSq SINE Alu 1 302 -11 250 268 28 14 chr11 52736446 52736517 -96046955 - MIR SINE MIR -41 221 150 243 0 0 0 chr11 52736966 52736993 -96046479 + (A)n Simple_repeat Simple_repeat 1 27 0 347 287 89 13 chr11 52737771 52737928 -96045544 - L1ME4a LINE L1 0 6121 5953 22 35 0 0 chr11 52738645 52738674 -96044798 + AT_rich Low_complexity Low_complexity 1 29 0 236 261 11 57 chr11 52739249 52739337 -96044135 - MIR SINE MIR -108 154 71 648 229 246 32 chr11 52739629 52740325 -96043147 - SATR1 Satellite Satellite -1 844 1 1500 206 140 0 chr11 52740460 52740854 -96042618 - SATR1 Satellite Satellite -20 450 2 2157 175 109 10 chr11 52740886 52742882 -96040590 - SATR1 Satellite Satellite -3 2192 1 28 48 0 0 chr11 52742882 52742924 -96040548 + AT_rich Low_complexity Low_complexity 1 42 0 356 216 12 43 chr11 52742967 52743129 -96040343 + (TTA)n Simple_repeat Simple_repeat 2 158 0 346 111 74 12 chr11 52743662 52743824 -96039648 + (TA)n Simple_repeat Simple_repeat 1 172 0 301 229 74 25 chr11 52744687 52744809 -96038663 + L1M4 LINE L1 5123 5250 -896 342 0 0 0 chr11 52746139 52746177 -96037295 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 216 122 0 0 chr11 52748001 52748042 -96035430 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 1878 139 58 39 chr11 52748283 52748699 -96034773 + L1MA4A LINE L1 5876 6299 -4 22 48 0 48 chr11 52748701 52748763 -96034709 + AT_rich Low_complexity Low_complexity 1 59 0 194 175 18 53 chr11 52749505 52749562 -96033910 - L2 LINE L2 -100 3213 3159 181 311 49 0 chr11 52749927 52749988 -96033484 - L2 LINE L2 -545 2769 2706 733 207 37 6 chr11 52750599 52750763 -96032709 - MER58A DNA MER1_type -9 215 47 222 233 0 0 chr11 52750839 52750899 -96032573 + (TA)n Simple_repeat Simple_repeat 2 61 0 1797 157 26 29 chr11 52750953 52751265 -96032207 + AluSx SINE Alu 1 311 -1 462 214 0 0 chr11 52751427 52751572 -96031900 + G-rich Low_complexity Low_complexity 1 145 0 2218 92 3 0 chr11 52757126 52757419 -96026053 - AluSp SINE Alu -19 294 1 319 287 117 57 chr11 52757782 52758116 -96025356 - L1M2 LINE L1 -5817 1032 679 512 273 7 0 chr11 52758879 52759022 -96024450 + MER5A DNA MER1_type 6 149 -40 24 53 0 0 chr11 52759861 52759899 -96023573 + AT_rich Low_complexity Low_complexity 1 38 0 768 153 15 15 chr11 52760214 52760345 -96023127 - AluSq SINE Alu -159 154 24 1450 217 3 14 chr11 52760912 52761202 -96022270 - AluJo SINE Alu -25 287 1 846 273 80 11 chr11 52761358 52761735 -96021737 - L1MA9 LINE L1 -38 6274 5872 21 0 0 0 chr11 52765685 52765706 -96017766 + AT_rich Low_complexity Low_complexity 1 21 0 1845 128 60 104 chr11 52767012 52767481 -96015991 + LTR7 LTR ERV1 1 448 -2 655 254 0 0 chr11 52768312 52768438 -96015034 + FRAM SINE Alu 1 118 -58 313 103 17 35 chr11 52769629 52769687 -96013785 - MLT2B1 LTR ERVL 0 520 464 * 936 210 80 5 chr11 52769683 52769907 -96013565 + Tigger3(Golem) DNA MER2_type 2786 3026 -3 287 343 37 0 chr11 52769917 52770051 -96013421 - MLT2B3 LTR ERVL -46 508 370 * 1024 191 39 13 chr11 52770031 52770261 -96013211 - MLT2B3 LTR ERVL -314 240 5 303 326 58 64 chr11 52772439 52772752 -96010720 - L2 LINE L2 0 3313 3003 221 231 0 27 chr11 52772826 52772973 -96010499 + (TA)n Simple_repeat Simple_repeat 2 144 0 223 335 47 17 chr11 52772973 52773090 -96010382 - L2 LINE L2 -309 2963 2854 199 122 41 0 chr11 52774727 52774776 -96008696 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 23 0 0 0 chr11 52776608 52776631 -96006841 + AT_rich Low_complexity Low_complexity 1 23 0 225 271 170 13 chr11 52777848 52778224 -96005248 + L1ME3A LINE L1 4915 5349 -797 383 317 80 10 chr11 52778440 52778752 -96004720 + L1ME3A LINE L1 5596 5929 -241 224 109 0 22 chr11 52778906 52778952 -96004520 + (TA)n Simple_repeat Simple_repeat 1 45 0 369 43 0 0 chr11 52780344 52780391 -96003081 + (TTTTC)n Simple_repeat Simple_repeat 3 49 0 249 119 0 0 chr11 52780409 52780451 -96003021 + (TC)n Simple_repeat Simple_repeat 1 42 0 1184 195 88 0 chr11 52780464 52780715 -96002757 - AluSx SINE Alu -39 273 1 4888 238 55 11 chr11 52981838 52982972 -95800500 + MER57-int LTR ERV1 904 2086 -6340 870 263 73 0 chr11 52983248 52983548 -95799924 + L1MC4 LINE L1 7579 7900 -142 28 0 0 0 chr11 52983615 52983643 -95799829 + AT_rich Low_complexity Low_complexity 1 28 0 2039 102 118 94 chr11 52983732 52984575 -95798897 - pTR5 LTR ERV1 0 2438 66 2152 162 77 6 chr11 52984685 52985153 -95798319 + L1P4 LINE L1 5283 5783 -382 1369 209 16 29 chr11 52985154 52985460 -95798012 + AluJb SINE Alu 1 302 -10 2144 108 0 32 chr11 52985466 52985606 -95797866 + AluSg SINE Alu 1 144 -166 345 24 0 0 chr11 52985606 52985648 -95797824 + (CA)n Simple_repeat Simple_repeat 2 43 0 2144 108 0 32 chr11 52985648 52985822 -95797650 + AluSg SINE Alu 144 305 -5 2125 107 3 0 chr11 52985842 52986141 -95797331 + AluY SINE Alu 1 300 -11 344 153 47 12 chr11 52986152 52986237 -95797235 + AluS SINE Alu 5 92 -211 6481 133 50 11 chr11 52986374 52987084 -95796388 + MER57-int LTR ERV1 12 781 -2307 221 0 35 0 chr11 52987084 52987113 -95796359 + (TTTTC)n Simple_repeat Simple_repeat 1 30 0 6481 133 50 11 chr11 52987113 52987492 -95795980 + MER57-int LTR ERV1 781 1144 -1944 883 148 0 26 chr11 52987505 52987660 -95795812 - AluSp/q SINE Alu 0 313 163 2509 178 21 29 chr11 52987762 52987979 -95795493 + MER57-int LTR ERV1 6638 6855 -682 2163 133 0 3 chr11 52987979 52988280 -95795192 - AluSx SINE Alu -12 300 1 2509 178 21 29 chr11 52988280 52988589 -95794883 + MER57-int LTR ERV1 6855 7160 -377 2090 112 7 0 chr11 52988589 52988876 -95794596 + AluSc SINE Alu 1 289 -20 426 209 27 45 chr11 52988877 52988987 -95794485 + LTR54B LTR ERV1 14 121 -377 291 226 36 12 chr11 52988991 52989075 -95794397 + MER57-int LTR ERV1 7269 7354 -183 720 129 53 8 chr11 52989094 52989226 -95794246 + AluSq/x SINE Alu 1 138 -175 490 232 82 39 chr11 52990467 52990674 -95792798 - L1MC4 LINE L1 -536 7506 7291 1018 300 52 91 chr11 52991794 52991900 -95791572 + L1M3a LINE L1 2 111 -5844 396 302 0 9 chr11 52991900 52992016 -95791456 + FLAM_A SINE Alu 1 115 -18 1018 300 52 91 chr11 52992016 52992808 -95790664 + L1M3a LINE L1 111 865 -5090 1841 103 15 8 chr11 52994729 52994991 -95788481 + AluSc SINE Alu 35 298 -11 512 286 7 0 chr11 52995169 52995309 -95788163 + MIR SINE MIR 108 248 -14 485 204 36 22 chr11 52996516 52996653 -95786819 + MIR3 SINE MIR 7 145 -63 384 175 22 0 chr11 52997003 52997105 -95786367 - L1P LINE L1 -804 5342 5239 1527 179 47 42 chr11 52997207 52997285 -95786187 + L1P LINE L1 3715 3791 -2355 2313 111 0 0 chr11 52997285 52997591 -95785881 + AluSx SINE Alu 1 306 -6 1527 179 47 42 chr11 52997591 52997897 -95785575 + L1P LINE L1 3791 4101 -2045 2052 119 3 7 chr11 52997899 52998202 -95785270 + AluY SINE Alu 1 302 -9 2454 192 65 45 chr11 52998212 52999062 -95784410 + MER57-int LTR ERV1 4828 5694 -1843 233 273 71 20 chr11 52999459 52999558 -95783914 + L1 LINE L1 2 105 -5850 805 313 52 69 chr11 52999642 53000393 -95783079 + L1 LINE L1 76 814 -5141 2113 96 7 3 chr11 53000393 53000713 -95782759 + AluSg SINE Alu 1 310 0 805 313 52 69 chr11 53000713 53000753 -95782719 + L1 LINE L1 814 853 -5102 867 269 37 24 chr11 53000767 53001205 -95782267 + L1 LINE L1 3977 4423 -1611 2083 115 10 3 chr11 53001205 53001501 -95781971 - AluSq SINE Alu -15 298 1 867 269 37 24 chr11 53001501 53001519 -95781953 + L1 LINE L1 4423 4439 -1595 189 247 74 12 chr11 53001793 53001874 -95781598 + MIR SINE MIR 147 232 -30 464 264 62 16 chr11 53001997 53002126 -95781346 + MIR3 SINE MIR 26 160 -48 1925 157 18 0 chr11 53002897 53003183 -95780289 - AluSg SINE Alu -19 291 1 1041 194 40 45 chr11 53003251 53003636 -95779836 - LTR2B LTR ERV1 0 490 1 378 0 0 0 chr11 53004559 53004601 -95778871 + (TG)n Simple_repeat Simple_repeat 1 42 0 744 247 55 8 chr11 53004809 53005044 -95778428 - L1M2 LINE L1 -6595 254 9 1486 242 40 36 chr11 53005092 53005518 -95777954 - L1M4 LINE L1 -1868 4278 3848 1605 177 7 30 chr11 53005518 53005817 -95777655 - AluJo SINE Alu -20 292 1 1486 242 40 36 chr11 53005817 53005994 -95777478 - L1M4 LINE L1 -2298 3848 3673 243 0 0 0 chr11 53006168 53006195 -95777277 + (TG)n Simple_repeat Simple_repeat 2 28 0 740 126 8 0 chr11 53006214 53006341 -95777131 + L1MA5A LINE L1 6164 6291 -6 346 222 89 111 chr11 53006365 53006545 -95776927 - L1ME LINE L1 -731 5431 5256 755 292 52 17 chr11 53006658 53007313 -95776159 - L1ME LINE L1 -2775 3371 2694 898 244 14 0 chr11 53007554 53007767 -95775705 - ERVL LTR ERVL -4846 918 703 534 264 123 64 chr11 53007930 53008351 -95775121 - LTR16A1 LTR ERVL -4 453 8 234 380 80 37 chr11 53008377 53008677 -95774795 + L2 LINE L2 2576 2888 -426 * 250 243 95 14 chr11 53008644 53008718 -95774754 + L2 LINE L2 3234 3313 0 684 140 0 97 chr11 53009052 53009259 -95774213 - AluSx SINE Alu -123 189 3 202 290 21 83 chr11 53009341 53009534 -95773938 + L2 LINE L2 3123 3303 -10 1826 143 57 0 chr11 53009624 53009904 -95773568 + AluSc SINE Alu 1 296 -13 300 213 75 0 chr11 53010775 53010855 -95772617 + MIR SINE MIR 119 204 -58 463 299 76 30 chr11 53012916 53013113 -95770359 - MIR SINE MIR 0 262 57 359 356 55 6 chr11 53013491 53013654 -95769818 + MIR SINE MIR 36 206 -56 214 274 0 63 chr11 53013977 53014072 -95769400 + MIR SINE MIR 96 184 -78 3812 200 44 17 chr11 53014999 53016457 -95767015 - L1MA9 LINE L1 -4 7268 5779 2076 260 70 40 chr11 53016483 53018431 -95765041 - L1MA9 LINE L1 -4174 2933 934 822 254 20 6 chr11 53018455 53018743 -95764729 - L1M3c LINE L1 -5845 1192 42 2247 100 0 3 chr11 53018754 53019045 -95764427 - AluY SINE Alu -21 290 1 1748 217 20 4 chr11 53019045 53019501 -95763971 - L1M4 LINE L1 -814 5332 4870 225 143 57 43 chr11 53019507 53019577 -95763895 - L1M4 LINE L1 -1586 4560 4490 529 162 48 0 chr11 53019577 53019682 -95763790 - MLT1A1 LTR MaLR 0 365 256 3101 71 2 2 chr11 53019687 53020095 -95763377 + L1PA6 LINE L1 5744 6151 -3 419 358 34 11 chr11 53020251 53020430 -95763042 - MIR SINE MIR -76 186 4 621 314 93 39 chr11 53021089 53021533 -95761939 + L2 LINE L2 2794 3255 -58 239 333 35 0 chr11 53021702 53021846 -95761626 - LTR67 LTR ERVL 0 557 409 1448 170 79 95 chr11 53022223 53022730 -95760742 - L1MA9 LINE L1 -38 6274 5776 335 208 0 0 chr11 53022748 53022825 -95760647 + L1MA9 LINE L1 6162 6238 -74 324 141 56 63 chr11 53022826 53022968 -95760504 + (TTATA)n Simple_repeat Simple_repeat 4 144 0 2935 188 15 47 chr11 53022977 53023904 -95759568 - L1MA9 LINE L1 -544 5768 4813 2248 106 3 3 chr11 53023904 53024205 -95759267 + AluSx SINE Alu 1 301 -11 2935 188 15 47 chr11 53024205 53024327 -95759145 - L1MA9 LINE L1 -1499 4813 4689 1884 177 0 0 chr11 53024327 53024643 -95758829 - AluSx SINE Alu 0 316 1 2935 188 15 47 chr11 53024643 53024894 -95758578 - L1MA9 LINE L1 -1623 4689 4517 298 253 53 0 chr11 53024904 53024979 -95758493 + 5S rRNA rRNA 1 79 -42 288 316 115 34 chr11 53024993 53025202 -95758270 - MIR SINE MIR -3 259 34 3488 183 19 24 chr11 53025392 53025681 -95757791 - L1MC1 LINE L1 -30 6583 6294 3259 81 0 2 chr11 53025681 53026128 -95757344 + L1PA8 LINE L1 5725 6170 -2 3488 183 19 24 chr11 53026128 53026594 -95756878 - L1MC1 LINE L1 -319 6294 5832 3185 228 46 53 chr11 53026595 53026926 -95756546 - L1MC1 LINE L1 -1334 5092 4760 2247 103 3 13 chr11 53026926 53027238 -95756234 - AluSp SINE Alu -4 309 1 3185 228 46 53 chr11 53027238 53028214 -95755258 - L1MC1 LINE L1 -1666 4760 3794 820 181 6 6 chr11 53028226 53028386 -95755086 + MLT1A1 LTR MaLR 1 160 -205 570 222 97 0 chr11 53028387 53028531 -95754941 - L1MC1 LINE L1 -5825 601 444 1544 169 40 91 chr11 53028664 53029114 -95754358 - L1MC1 LINE L1 -5999 427 1 216 330 23 11 chr11 53029531 53029619 -95753853 + L2 LINE L2 3184 3272 0 231 336 64 0 chr11 53031150 53031260 -95752212 - L2 LINE L2 -436 2878 2762 550 329 120 32 chr11 53031264 53031796 -95751676 - L2 LINE L2 -518 2796 2218 1194 246 18 70 chr11 53031921 53032319 -95751153 + MLT1B LTR MaLR 14 390 0 1574 193 11 6 chr11 53032321 53032683 -95750789 + MLT1B-int LTR MaLR 3 366 -1005 737 330 102 20 chr11 53034716 53035259 -95748213 - L2 LINE L2 -344 2928 2339 340 371 36 0 chr11 53035354 53035494 -95747978 + L2 LINE L2 2927 3071 -201 3807 199 9 32 chr11 53037445 53038254 -95745218 - L1M1 LINE L1 -6747 818 29 22 0 0 0 chr11 53038586 53038608 -95744864 + AT_rich Low_complexity Low_complexity 1 22 0 2039 127 12 3 chr11 53039936 53040266 -95743206 - L1M1 LINE L1 -526 5774 5442 2206 174 52 9 chr11 53040269 53040735 -95742737 + L1MA4 LINE L1 5815 6300 0 205 241 86 0 chr11 53041162 53041220 -95742252 + MER5A DNA MER1_type 102 164 -25 288 172 17 0 chr11 53041558 53041616 -95741856 - L2 LINE L2 -1353 1961 1903 468 319 36 28 chr11 53041625 53041873 -95741599 - L2 LINE L2 -1548 1766 1517 180 0 0 0 chr11 53042020 53042040 -95741432 + (TG)n Simple_repeat Simple_repeat 1 20 0 297 188 21 21 chr11 53042064 53042160 -95741312 + CT-rich Low_complexity Low_complexity 4 99 0 284 327 101 42 chr11 53042406 53042862 -95740610 - L1MC/D LINE L1 -2071 5737 5255 22 0 0 0 chr11 53042875 53042897 -95740575 + AT_rich Low_complexity Low_complexity 1 22 0 276 274 30 15 chr11 53043046 53043181 -95740291 - L1MC/D LINE L1 -1126 5020 4884 236 326 67 22 chr11 53043193 53043328 -95740144 + L2 LINE L2 3172 3312 -1 25 31 0 0 chr11 53044493 53044525 -95738947 + AT_rich Low_complexity Low_complexity 1 32 0 22 56 0 0 chr11 53044572 53044608 -95738864 + AT_rich Low_complexity Low_complexity 1 36 0 846 209 35 0 chr11 53045222 53045394 -95738078 + AluJb SINE Alu 135 312 0 256 305 176 8 chr11 53045896 53046027 -95737445 + L2 LINE L2 3110 3262 -10 1031 169 5 0 chr11 53046315 53046499 -95736973 - L1PA16 LINE L1 -2 6164 5980 4962 122 32 25 chr11 53047022 53047866 -95735606 + L1PA13 LINE L1 5310 6159 -4 382 271 61 0 chr11 53048494 53048613 -95734859 - L1ME LINE L1 -564 5600 5468 309 117 31 0 chr11 53048601 53048657 -95734815 - L1P4 LINE L1 -728 5434 5371 * 593 215 61 0 chr11 53048694 53048857 -95734615 - L1ME LINE L1 -855 5291 5119 1243 251 12 9 chr11 53048872 53049199 -95734273 + L1MA2 LINE L1 2582 2909 -3237 22 0 0 0 chr11 53049343 53049365 -95734107 + AT_rich Low_complexity Low_complexity 1 22 0 10096 193 56 13 chr11 53049372 53051673 -95731799 + L1MA2 LINE L1 2900 5304 -842 2007 146 0 0 chr11 53051673 53051967 -95731505 + AluSq SINE Alu 1 294 -19 10096 193 56 13 chr11 53051967 53051996 -95731476 + L1MA2 LINE L1 5304 5330 -816 4691 143 5 8 chr11 53052001 53052789 -95730683 + L1MA2 LINE L1 5519 6304 0 282 233 23 0 chr11 53052802 53052888 -95730584 - L1ME LINE L1 -3454 2692 2605 285 226 26 9 chr11 53052896 53053011 -95730461 + C-rich Low_complexity Low_complexity 3 119 0 894 185 0 72 chr11 53053012 53053207 -95730265 + L1 LINE L1 4833 5013 -1133 213 106 64 43 chr11 53053210 53053257 -95730215 + CT-rich Low_complexity Low_complexity 1 48 0 461 265 10 0 chr11 53053257 53053359 -95730113 - FLAM_A SINE Alu -36 106 4 746 146 14 35 chr11 53053404 53053548 -95729924 + THE1C-int LTR MaLR 1440 1580 0 2171 125 24 27 chr11 53053548 53053924 -95729548 + THE1C LTR MaLR 1 375 0 227 204 0 0 chr11 53056588 53056637 -95726835 + T-rich Low_complexity Low_complexity 1 49 0 1057 169 12 0 chr11 53056785 53056957 -95726515 - AluSg/x SINE Alu -8 304 131 699 242 18 96 chr11 53057341 53057622 -95725850 - MIR SINE MIR -1 261 3 34 0 0 0 chr11 53057753 53057787 -95725685 + AT_rich Low_complexity Low_complexity 1 34 0 787 296 89 24 chr11 53060903 53061376 -95722096 - MLT1H1 LTR MaLR -45 510 53 399 249 132 46 chr11 53061384 53061794 -95721678 - L1M4 LINE L1 -1512 4634 4190 1112 286 67 8 chr11 53061810 53062395 -95721077 - L1M4 LINE L1 -2695 3451 2833 667 294 39 15 chr11 53062398 53062602 -95720870 - MLT1E LTR MaLR -2 591 383 1189 109 0 0 chr11 53063121 53063286 -95720186 - THE1A LTR MaLR 0 355 191 444 38 0 0 chr11 53063280 53063333 -95720139 - THE1A LTR MaLR -302 53 1 * 24 32 0 0 chr11 53065009 53065040 -95718432 + AT_rich Low_complexity Low_complexity 1 31 0 4155 22 6 4 chr11 53066474 53066967 -95716505 - L1PA4 LINE L1 0 6155 5662 440 256 217 5 chr11 53067021 53067224 -95716248 - MIR SINE MIR -14 248 3 237 345 108 0 chr11 53067448 53067596 -95715876 - MIR3 SINE MIR -27 181 18 448 131 28 19 chr11 53070310 53070417 -95713055 - Charlie5 DNA MER1_type -82 2530 2423 21575 48 2 1 chr11 53070435 53073958 -95709514 - L1PA4 LINE L1 -3 6152 2626 7502 191 41 6 chr11 53073958 53076319 -95707153 - L1PBa LINE L1 -3180 3682 1094 2897 244 74 19 chr11 53076322 53077310 -95706162 - L1PBa LINE L1 -5816 1047 6 1036 198 14 18 chr11 53077359 53077581 -95705891 + THE1C LTR MaLR 1 221 -154 273 314 52 71 chr11 53077752 53078077 -95705395 + HERVL LTR ERVL 2926 3244 -2410 524 0 45 0 chr11 53080809 53080875 -95702597 + (TTTTC)n Simple_repeat Simple_repeat 2 70 0 638 281 61 4 chr11 53081394 53081640 -95701832 - MIR SINE MIR 0 262 3 33 0 0 0 chr11 53081775 53081808 -95701664 + AT_rich Low_complexity Low_complexity 1 33 0 213 306 32 0 chr11 53081873 53081935 -95701537 - MIR3 SINE MIR -27 181 118 210 244 61 61 chr11 53082568 53082650 -95700822 + L2 LINE L2 3162 3243 -70 193 333 143 0 chr11 53082840 53082903 -95700569 - L2 LINE L2 -8 3305 3234 192 40 0 0 chr11 53084693 53084718 -95698754 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 40666 68 4 0 chr11 53084718 53090834 -95692638 - L1PA4 LINE L1 -18 6137 2 599 291 89 42 chr11 53091214 53091692 -95691780 - MLT1H1 LTR MaLR -26 504 46 253 276 26 0 chr11 53091739 53091815 -95691657 - L1M4 LINE L1 -1560 4586 4509 4002 61 0 0 chr11 53092167 53092715 -95690757 + L1PA4 LINE L1 5633 6180 0 6347 73 5 5 chr11 53092715 53093562 -95689910 + L1PA7 LINE L1 5305 6151 -3 831 280 67 12 chr11 53093598 53094094 -95689378 - L1M4 LINE L1 -2789 3357 2835 598 314 59 14 chr11 53094099 53094319 -95689153 - MLT1E LTR MaLR -2 591 362 1543 183 70 68 chr11 53095333 53095716 -95687756 + LTR3 LTR ERVK 5 388 -44 3535 103 19 15 chr11 53095731 53096253 -95687219 + HERVK3 LTR ERVK 6718 7241 -2 2191 183 7 38 chr11 53096270 53096696 -95686776 + LTR3 LTR ERVK 20 432 0 569 229 201 0 chr11 53099459 53099673 -95683799 - MIR SINE MIR -2 260 4 25 31 0 0 chr11 53099812 53099844 -95683628 + AT_rich Low_complexity Low_complexity 1 32 0 663 260 49 25 chr11 53103043 53103247 -95680225 - MLT1H1 LTR MaLR -45 510 302 7525 224 32 10 chr11 53103391 53105006 -95678466 - MSTA-int LTR MaLR 0 1651 2 2213 164 46 17 chr11 53105007 53105423 -95678049 - MSTA LTR MaLR 0 428 1 1796 153 82 20 chr11 53106640 53106993 -95676479 + THE1C LTR MaLR 1 375 0 4002 104 35 7 chr11 53108018 53109023 -95674449 - MER11A LTR ERVK 0 1266 1 476 312 24 41 chr11 53111226 53111396 -95672076 + LTR16A LTR ERVL 9 175 -275 332 280 46 34 chr11 53111439 53111614 -95671858 - ERVL LTR ERVL -1788 3976 3800 1764 190 42 12 chr11 53111753 53112153 -95671319 - L1MA9 LINE L1 -9 6303 5892 1360 170 66 22 chr11 53112154 53112409 -95671063 + L1MB1 LINE L1 5511 5780 -532 490 15 30 0 chr11 53112409 53112476 -95670996 + (TCTA)n Simple_repeat Simple_repeat 1 69 0 1360 170 66 22 chr11 53112476 53112491 -95670981 + L1MB1 LINE L1 5780 5793 -519 299 256 11 0 chr11 53112507 53112597 -95670875 - L1MA9 LINE L1 -207 6105 6015 440 87 29 0 chr11 53112791 53112860 -95670612 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 334 135 0 0 chr11 53112881 53112936 -95670536 + L1MB1 LINE L1 5828 5882 -307 1237 254 89 28 chr11 53112997 53113719 -95669753 - L1MEd LINE L1 -3152 2977 2212 415 283 128 57 chr11 53113860 53114228 -95669244 - L1MEd LINE L1 -4443 1686 1293 390 154 0 45 chr11 53114228 53114338 -95669134 + CT-rich Low_complexity Low_complexity 4 108 0 1539 182 37 0 chr11 53114338 53114607 -95668865 - AluSx SINE Alu -33 279 1 295 267 67 47 chr11 53114719 53115128 -95668344 - L1MEd LINE L1 -4863 1256 848 650 184 0 0 chr11 53115668 53115777 -95667695 - FLAM_A SINE Alu -11 131 23 1696 159 88 20 chr11 53115785 53116136 -95667336 + THE1C LTR MaLR 1 375 0 6539 60 4 4 chr11 53117644 53118482 -95664990 - L1PA4 LINE L1 -1 6154 5317 16509 71 8 2 chr11 53118520 53121513 -95661959 - L1PA4 LINE L1 -4 6151 3143 1213 133 4 1 chr11 53121513 53124752 -95658720 - ALR/Alpha Satellite centromeric 0 3248 1 1167 138 7 1 chr11 53124776 53127721 -95655751 + ALR/Alpha Satellite centromeric 1 2961 -11 1175 140 8 5 chr11 53127732 53133006 -95650466 + ALR/Alpha Satellite centromeric 1 5290 0 1139 135 5 11 chr11 53133017 53134828 -95648644 + ALR/Alpha Satellite centromeric 1 1801 -2 * 3474 161 27 16 chr11 53134802 53135425 -95648047 + MER11C LTR ERVK 442 1071 0 482 176 0 0 chr11 53135427 53135501 -95647971 - tRNA-Lys-AAG tRNA tRNA 0 76 3 2094 161 42 0 chr11 53135502 53135863 -95647609 + HERVK11 LTR ERVK 476 851 -7102 2784 118 36 6 chr11 53135863 53136446 -95647026 + HERVK11 LTR ERVK 1165 2700 -5253 * 28751 84 8 4 chr11 53136438 53140277 -95643195 + HERVK11 LTR ERVK 2912 6767 -1186 7825 72 2 0 chr11 53140262 53141257 -95642215 + HERVK11 LTR ERVK 6957 7953 0 * 6230 129 30 18 chr11 53141257 53142315 -95641157 + MER11C LTR ERVK 1 1071 0 1240 146 6 1 chr11 53142315 53157502 -95625970 + ALR/Alpha Satellite centromeric 1 15263 -7 3162 213 48 43 chr11 53157502 53158479 -95624993 + MER11C LTR ERVK 1 1071 0 1108 147 10 0 chr11 53158479 53158832 -95624640 + ALR/Alpha Satellite centromeric 1 356 -1 1179 148 3 6 chr11 53158844 53160997 -95622475 + ALR/Alpha Satellite centromeric 1 2146 -3 18592 57 52 6 chr11 53160998 53163483 -95619989 - L1PA2 LINE L1 -3336 2810 212 * 21302 32 0 0 chr11 53163474 53166727 -95616745 + L1PA2 LINE L1 2812 6154 -1 1137 151 7 5 chr11 53166727 53167503 -95615969 - ALR/Alpha Satellite centromeric -10 777 1 420 301 0 0 chr11 53167534 53167700 -95615772 + C-rich Low_complexity Low_complexity 1 166 0 1258 146 5 3 chr11 53168068 53196280 -95587192 - ALR/Alpha Satellite centromeric -74 28286 1 39357 81 2 6 chr11 53196301 53202318 -95581154 - L1PA4 LINE L1 -158 5997 3 1210 147 6 2 chr11 53202319 53207869 -95575603 + ALR/Alpha Satellite centromeric 1 5575 -27 1117 153 4 3 chr11 53207881 53209332 -95574140 - ALR/Alpha Satellite centromeric 0 1453 1 1060 182 9 10 chr11 53309334 53311148 -95472324 + ALR/Alpha Satellite centromeric 1 1812 -56 1090 162 5 3 chr11 53311250 53317142 -95466330 - ALR/Alpha Satellite centromeric 0 5902 1 302 48 0 0 chr11 53317138 53317180 -95466292 - AluY SINE Alu -2 297 256 * 1335 113 2 2 chr11 53317281 53324423 -95459049 - ALR/Alpha Satellite centromeric -1 7139 1 1050 171 4 2 chr11 53324524 53330185 -95453287 + ALR/Alpha Satellite centromeric 1 5670 -11 1038 176 7 0 chr11 53330196 53331464 -95452008 + ALR/Alpha Satellite centromeric 1 1276 -13 39425 67 5 1 chr11 53331477 53337394 -95446078 - L1PA4 LINE L1 -3 6152 221 1335 112 1 1 chr11 53337495 53344087 -95439385 - ALR/Alpha Satellite centromeric 0 6594 1 1298 114 4 2 chr11 53344100 53350913 -95432559 - ALR/Alpha Satellite centromeric 0 6825 1 1072 180 0 0 chr11 53351175 53351375 -95432097 + L1 LINE L1 4759 4958 -1188 410 260 64 40 chr11 53351380 53351553 -95431919 + MLT1E3 LTR MaLR 46 222 -402 1320 201 7 19 chr11 53352332 53352601 -95430871 + AluJo SINE Alu 1 266 -46 220 279 23 12 chr11 53353304 53353390 -95430082 + (TATG)n Simple_repeat Simple_repeat 2 88 0 188 227 0 23 chr11 53353658 53353702 -95429770 + L3b LINE CR1 1530 1572 -11 297 189 40 14 chr11 53353787 53353861 -95429611 - MLT2B1 LTR ERVL 0 520 445 1483 174 26 65 chr11 53353862 53354134 -95429338 + MER7A DNA MER2_type 22 278 -2760 1774 151 0 31 chr11 53354134 53354425 -95429047 + AluSx SINE Alu 6 287 -25 1483 174 26 65 chr11 53354425 53354491 -95428981 + MER7A DNA MER2_type 278 345 -1 480 289 0 15 chr11 53354497 53354632 -95428840 - MLT2B3 LTR ERVL -47 507 375 * 998 220 21 21 chr11 53354628 53354869 -95428603 - MLT2B3 LTR ERVL -313 241 1 503 146 0 58 chr11 53355097 53355200 -95428272 - L1PA11 LINE L1 0 6174 6078 754 224 0 0 chr11 53356708 53356873 -95426599 - ALR/Alpha Satellite centromeric 0 172 8 1022 170 9 0 chr11 53356888 53358000 -95425472 - ALR/Alpha Satellite centromeric 0 1122 1 6120 13 0 0 chr11 53358011 53358705 -95424767 - L1HS LINE L1 0 6155 5462 3338 21 0 0 chr11 53358701 53359151 -95424321 + L1P1 LINE L1 4988 5437 -718 * 1061 167 8 3 chr11 53359151 53361333 -95422139 - ALR/Alpha Satellite centromeric 0 2192 1 1693 43 14 0 chr11 53361333 53361543 -95421929 - L1P LINE L1 -1180 4966 4754 3493 41 7 2 chr11 53361544 53361984 -95421488 + L1PA2 LINE L1 5714 6155 0 1137 169 4 3 chr11 53361984 53368624 -95414848 - ALR/Alpha Satellite centromeric -1 6645 1 5917 59 1 31 chr11 53368624 53369938 -95413534 + L1PA4 LINE L1 4598 5886 -269 975 173 0 1 chr11 53370041 53370556 -95412916 - ALR/Alpha Satellite centromeric 0 514 1 1105 162 7 2 chr11 53370571 53377498 -95405974 - ALR/Alpha Satellite centromeric 0 6961 1 1211 162 6 2 chr11 53377514 53393722 -95389750 - ALR/Alpha Satellite centromeric 0 16271 1 35106 75 1 2 chr11 53393722 53398373 -95385099 - L1P LINE L1 -1491 4655 9 1288 135 5 1 chr11 53398390 53405369 -95378103 + ALR/Alpha Satellite centromeric 1 7005 -37 1069 160 8 4 chr11 53405469 53410270 -95373202 - ALR/Alpha Satellite centromeric 0 4817 1 1093 173 6 4 chr11 53410288 53415342 -95368130 + ALR/Alpha Satellite centromeric 1 5066 -11 1088 168 4 2 chr11 53415356 53419714 -95363758 + ALR/Alpha Satellite centromeric 1 4365 -10 1042 167 4 2 chr11 53419725 53422282 -95361190 + ALR/Alpha Satellite centromeric 1 2560 -13 1065 167 12 11 chr11 53422295 53425027 -95358445 + ALR/Alpha Satellite centromeric 1 2735 -67 1075 164 2 3 chr11 53425052 53428677 -95354795 + ALR/Alpha Satellite centromeric 1 3623 -1 39537 68 11 10 chr11 53428680 53434806 -95348666 + L1PA4 LINE L1 13 6144 -11 711 224 0 20 chr11 53434817 53434969 -95348503 + AluJo SINE Alu 120 268 -44 1119 168 4 2 chr11 53435359 53437845 -95345627 + ALR/Alpha Satellite centromeric 1 2491 -6 1040 178 10 2 chr11 53437857 53441348 -95342124 + ALR/Alpha Satellite centromeric 1 3519 -6 1091 170 5 4 chr11 53441364 53445090 -95338382 + ALR/Alpha Satellite centromeric 1 3732 -36 6692 65 2 20 chr11 53445203 53446470 -95337002 + L1PA4 LINE L1 4911 6153 -2 975 171 1 1 chr11 53446493 53447087 -95336385 - ALR/Alpha Satellite centromeric 0 593 1 1280 141 6 1 chr11 53447102 53454716 -95328756 - ALR/Alpha Satellite centromeric 0 7652 1 1072 180 0 0 chr11 53454978 53455178 -95328294 + L1 LINE L1 4759 4958 -1188 410 260 64 40 chr11 53455183 53455356 -95328116 + MLT1E3 LTR MaLR 46 222 -402 1320 201 7 19 chr11 53456136 53456405 -95327067 + AluJo SINE Alu 1 266 -46 220 279 23 12 chr11 53457108 53457194 -95326278 + (TATG)n Simple_repeat Simple_repeat 2 88 0 188 227 0 23 chr11 53457462 53457506 -95325966 + L3b LINE CR1 1530 1572 -11 297 189 40 14 chr11 53457591 53457665 -95325807 - MLT2B1 LTR ERVL 0 520 445 1483 174 26 65 chr11 53457666 53457938 -95325534 + MER7A DNA MER2_type 22 278 -2760 1774 151 0 31 chr11 53457938 53458229 -95325243 + AluSx SINE Alu 6 287 -25 1483 174 26 65 chr11 53458229 53458295 -95325177 + MER7A DNA MER2_type 278 345 -1 480 289 0 15 chr11 53458301 53458436 -95325036 - MLT2B3 LTR ERVL -47 507 375 * 998 220 21 21 chr11 53458432 53458673 -95324799 - MLT2B3 LTR ERVL -313 241 1 503 146 0 58 chr11 53458901 53459004 -95324468 - L1PA11 LINE L1 0 6174 6078 483 328 26 81 chr11 53461010 53461312 -95322160 - L2 LINE L2 -73 3240 2970 213 94 0 0 chr11 53461312 53461344 -95322128 + (TG)n Simple_repeat Simple_repeat 2 33 0 483 328 26 81 chr11 53461344 53461499 -95321973 - L2 LINE L2 -343 2970 2808 216 67 0 0 chr11 53463087 53463117 -95320355 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 189 0 0 0 chr11 53464953 53464974 -95318498 + (TTTC)n Simple_repeat Simple_repeat 4 24 0 189 0 0 0 chr11 53464973 53464994 -95318478 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 205 171 0 0 chr11 53467123 53467158 -95316314 + (TATATG)n Simple_repeat Simple_repeat 1 35 0 665 80 61 17 chr11 53467610 53468034 -95315438 + (TA)n Simple_repeat Simple_repeat 1 442 0 192 186 0 41 chr11 53468657 53468754 -95314718 + (TAA)n Simple_repeat Simple_repeat 2 94 0 28 48 0 0 chr11 53468866 53468908 -95314564 + AT_rich Low_complexity Low_complexity 1 42 0 2215 188 94 7 chr11 53468908 53469795 -95313677 + SATR1 Satellite Satellite 1 963 -154 2346 168 127 16 chr11 53469809 53471339 -95312133 + SATR1 Satellite Satellite 1 1699 -15 824 240 264 15 chr11 53471470 53472564 -95310908 + SATR1 Satellite Satellite 1 1367 -15 312 195 110 102 chr11 53472581 53472699 -95310773 + SATR1 Satellite Satellite 215 333 -137 1072 198 237 48 chr11 53472739 53473233 -95310239 + SATR1 Satellite Satellite 1 587 -159 1499 131 50 42 chr11 53478914 53479174 -95304298 + AluSx SINE Alu 12 273 -39 267 103 0 0 chr11 53479196 53479235 -95304237 + (GAAA)n Simple_repeat Simple_repeat 3 41 0 1315 173 76 0 chr11 53480660 53480897 -95302575 + AluSg SINE Alu 16 270 -40 860 107 0 14 chr11 53480897 53481037 -95302435 + (GAAA)n Simple_repeat Simple_repeat 3 140 0 192 158 0 0 chr11 53482367 53482405 -95301067 + T-rich Low_complexity Low_complexity 1 38 0 634 98 52 17 chr11 53482522 53482695 -95300777 + (TA)n Simple_repeat Simple_repeat 2 180 0 631 285 0 0 chr11 53482696 53482833 -95300639 - FRAM SINE Alu -39 137 1 218 184 41 0 chr11 53482988 53483037 -95300435 + (TA)n Simple_repeat Simple_repeat 1 51 0 306 279 100 7 chr11 53483149 53483289 -95300183 + L1MEd LINE L1 1057 1209 -4996 320 360 42 13 chr11 53483565 53483801 -95299671 + L1MEd LINE L1 1432 1674 -4722 796 207 133 86 chr11 53483861 53484266 -95299206 - L1MCc LINE L1 -4997 1426 1003 2665 80 21 8 chr11 53484523 53484909 -95298563 + L1PA7 LINE L1 5760 6150 -4 25 31 0 0 chr11 53484931 53484963 -95298509 + AT_rich Low_complexity Low_complexity 1 32 0 342 0 0 0 chr11 53485026 53485064 -95298408 + (TA)n Simple_repeat Simple_repeat 1 38 0 510 288 143 19 chr11 53485317 53486117 -95297355 - L1ME LINE L1 -353 5817 4915 23 0 0 0 chr11 53487210 53487233 -95296239 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr11 53488483 53488504 -95294968 + AT_rich Low_complexity Low_complexity 1 21 0 423 77 26 13 chr11 53488677 53488755 -95294717 + (TTTA)n Simple_repeat Simple_repeat 2 80 0 218 426 22 0 chr11 53490387 53490523 -95292949 + L2 LINE L2 2850 2988 -325 368 283 0 20 chr11 53490528 53490680 -95292792 + (TA)n Simple_repeat Simple_repeat 1 149 0 303 370 60 23 chr11 53490718 53491018 -95292454 + L2 LINE L2 3003 3313 0 1046 209 39 13 chr11 53493198 53493428 -95290044 + MLT2B3 LTR ERVL 5 240 -314 286 351 37 0 chr11 53493408 53493542 -95289930 + MLT2B3 LTR ERVL 370 508 -46 * 1039 184 92 0 chr11 53493552 53493758 -95289714 - Tigger3(Golem) DNA MER2_type -2 3027 2803 351 0 0 0 chr11 53493760 53493799 -95289673 + (TA)n Simple_repeat Simple_repeat 1 39 0 329 67 22 0 chr11 53493806 53493851 -95289621 + MLT2D LTR ERVL 369 414 0 647 254 0 0 chr11 53495051 53495177 -95288295 - FRAM SINE Alu -58 118 1 216 0 0 0 chr11 53497203 53497227 -95286245 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 23 54 0 0 chr11 53498433 53498470 -95285002 + AT_rich Low_complexity Low_complexity 1 37 0 357 75 0 0 chr11 53499059 53499112 -95284360 + (TTTA)n Simple_repeat Simple_repeat 1 53 0 271 319 99 42 chr11 53499798 53500011 -95283461 - MLT1J LTR MaLR -176 335 111 836 283 79 13 chr11 53501187 53501565 -95281907 + L1MA9 LINE L1 5872 6274 -38 1386 223 3 17 chr11 53501720 53502011 -95281461 + AluJo SINE Alu 1 287 -25 774 155 31 0 chr11 53502580 53502709 -95280763 + AluSq SINE Alu 24 156 -157 23 105 0 0 chr11 53503037 53503123 -95280349 + AT_rich Low_complexity Low_complexity 1 86 0 329 58 19 0 chr11 53503307 53503359 -95280113 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 420 220 0 0 chr11 53503390 53503481 -95279991 - L1MA9 LINE L1 -207 6105 6015 357 195 50 1 chr11 53503498 53503586 -95279886 + L1MA9 LINE L1 5775 5865 -426 311 154 0 0 chr11 53503604 53503669 -95279803 - L1MA7 LINE L1 0 6291 6227 258 163 0 0 chr11 53503669 53503718 -95279754 + L1M3 LINE L1 5834 5882 -289 1070 297 65 11 chr11 53503779 53504506 -95278966 - L1MEd LINE L1 -3152 2977 2212 422 301 38 38 chr11 53504958 53505323 -95278149 - L1MEd LINE L1 -4863 1256 892 688 165 0 0 chr11 53505883 53505992 -95277480 - FLAM_A SINE Alu -11 131 23 1621 184 82 20 chr11 53506000 53506353 -95277119 + THE1C LTR MaLR 1 375 0 205 195 0 0 chr11 53509757 53509798 -95273674 + T-rich Low_complexity Low_complexity 1 41 0 647 285 61 4 chr11 53510309 53510555 -95272917 - MIR SINE MIR 0 262 3 36 23 0 0 chr11 53510690 53510733 -95272739 + AT_rich Low_complexity Low_complexity 1 43 0 184 293 20 101 chr11 53510787 53510886 -95272586 - MIR3 SINE MIR -27 181 91 675 280 134 41 chr11 53513902 53514364 -95269108 - MLT1H1 LTR MaLR -50 505 46 406 258 131 39 chr11 53514381 53514769 -95268703 - L1M4 LINE L1 -1525 4621 4198 7647 33 0 0 chr11 53514829 53515741 -95267731 - L1P LINE L1 -1110 5036 4125 4537 35 2 2 chr11 53515741 53516280 -95267192 + L1PA3 LINE L1 5605 6144 -11 914 275 61 14 chr11 53516307 53516798 -95266674 - L1M4 LINE L1 -2744 3402 2889 694 304 24 14 chr11 53516856 53517063 -95266409 - MLT1E LTR MaLR -2 591 383 556 262 215 0 chr11 53517575 53517789 -95265683 - MIR SINE MIR 0 262 3 200 323 32 0 chr11 53518011 53518073 -95265399 - MIR3 SINE MIR -27 181 118 232 302 69 37 chr11 53520904 53521093 -95262379 - MLT1H1-int LTR MaLR -847 524 330 888 299 107 44 chr11 53521228 53521723 -95261749 - MLT1H1 LTR MaLR 0 555 30 532 290 86 19 chr11 53521751 53522168 -95261304 - L1M4 LINE L1 -1512 4634 4190 720 301 75 11 chr11 53522185 53522640 -95260832 - L1M4 LINE L1 -2688 3458 2975 39145 87 3 3 chr11 53522679 53528827 -95254645 - L1PA6 LINE L1 -1 6153 1 24682 96 2 12 chr11 53528829 53532416 -95251056 - L1P LINE L1 -1970 4176 629 27 0 0 0 chr11 53532449 53532476 -95250996 + AT_rich Low_complexity Low_complexity 1 27 0 627 242 109 38 chr11 53533231 53533715 -95249757 - L1M4 LINE L1 -708 5470 4951 2325 100 0 10 chr11 53533716 53534025 -95249447 + AluSx SINE Alu 1 306 -6 2552 215 29 0 chr11 53534025 53534654 -95248818 + L1 LINE L1 3034 3680 -2466 192 203 4 0 chr11 53535004 53535050 -95248422 + MIR SINE MIR 51 97 -111 181 420 20 20 chr11 53535540 53535785 -95247687 + L2 LINE L2 2829 3073 -199 246 70 0 0 chr11 53536176 53536219 -95247253 - Alu SINE Alu -2 301 259 295 323 23 0 chr11 53536624 53536757 -95246715 + SST1 Satellite centromeric 832 967 -596 207 203 0 17 chr11 53537027 53537086 -95246386 + (CA)n Simple_repeat Simple_repeat 1 58 0 431 277 63 59 chr11 53537091 53537394 -95246078 - SST1 Satellite centromeric -27 1536 1233 2020 123 3 16 chr11 53537787 53538097 -95245375 - AluSx SINE Alu -6 306 1 180 0 0 0 chr11 53538365 53538385 -95245087 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 444 125 0 0 chr11 53538641 53538713 -95244759 - Alu SINE Alu -2 309 238 554 309 49 18 chr11 53539175 53539398 -95244074 + MLT1E LTR MaLR 362 591 -2 914 301 52 10 chr11 53539403 53539995 -95243477 + L1M4 LINE L1 2835 3451 -2695 457 263 91 38 chr11 53540012 53540385 -95243087 + L1M4 LINE L1 4190 4582 -1564 657 300 79 35 chr11 53540456 53540926 -95242546 + MLT1H1 LTR MaLR 53 504 -51 188 349 143 0 chr11 53543083 53543146 -95240326 + L2 LINE L2 3193 3264 -8 37 23 0 0 chr11 53544189 53544233 -95239239 + AT_rich Low_complexity Low_complexity 1 44 0 650 264 92 4 chr11 53544368 53544607 -95238865 + MIR SINE MIR 3 262 0 223 191 0 0 chr11 53545115 53545157 -95238315 + A-rich Low_complexity Low_complexity 1 42 0 801 164 132 64 chr11 53547020 53547239 -95236233 - THE1C LTR MaLR 0 375 142 276 260 0 0 chr11 53547245 53547318 -95236154 + L1MA9 LINE L1 6033 6105 -207 339 25 0 0 chr11 53547318 53547358 -95236114 + (TA)n Simple_repeat Simple_repeat 1 40 0 1150 191 66 15 chr11 53547358 53547631 -95235841 - L1M2 LINE L1 -512 5800 5514 1652 170 58 18 chr11 53547636 53548036 -95235436 + L1MA9 LINE L1 5895 6310 -2 542 341 61 23 chr11 53548534 53548974 -95234498 + MERVL LTR ERVL 4153 4609 -876 302 348 19 32 chr11 53549329 53549484 -95233988 - LTR16A LTR ERVL -275 175 23 30616 57 4 0 chr11 53550544 53555327 -95228145 - L1PA4 LINE L1 -1 6154 1356 2118 168 43 19 chr11 53557295 53557713 -95225759 + MSTA LTR MaLR 1 428 0 7227 201 75 22 chr11 53557713 53559281 -95224191 + MSTA-int LTR MaLR 1 1651 0 789 205 84 14 chr11 53559281 53559496 -95223976 + MSTA LTR MaLR 1 230 -198 613 192 39 6 chr11 53560595 53560751 -95222721 + L1MA7 LINE L1 6128 6288 -3 26 50 0 0 chr11 53560752 53560792 -95222680 + AT_rich Low_complexity Low_complexity 1 40 0 2248 96 0 0 chr11 53562209 53562522 -95220950 + L1PA7 LINE L1 5842 6154 0 196 283 0 0 chr11 53562887 53562933 -95220539 + L2 LINE L2 3219 3264 -8 282 56 0 0 chr11 53563045 53563081 -95220391 + (CA)n Simple_repeat Simple_repeat 2 37 0 2219 198 29 2 chr11 53565012 53565456 -95218016 + L1MB3 LINE L1 5640 6095 -88 21 0 0 0 chr11 53565650 53565671 -95217801 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 53566303 53566331 -95217141 + AT_rich Low_complexity Low_complexity 1 28 0 341 367 127 0 chr11 53568027 53568272 -95215200 - LTR16A LTR ERVL -3 447 172 360 333 52 9 chr11 53568293 53568503 -95214969 + L1MC4 LINE L1 7455 7673 -369 408 277 84 0 chr11 53568534 53568653 -95214819 + FLAM_A SINE Alu 1 129 -4 11684 254 36 21 chr11 53568670 53574061 -95209411 - L1PA12 LINE L1 -1692 5892 436 1083 353 53 39 chr11 53574063 53576070 -95207402 + ERVL LTR ERVL 2984 5113 -651 267 348 0 17 chr11 53576144 53576259 -95207213 + ERVL LTR ERVL 5221 5333 -431 456 297 86 9 chr11 53576633 53576855 -95206617 + LTR33 LTR ERVL 210 448 -73 439 303 128 42 chr11 53578357 53578902 -95204570 + L1ME LINE L1 4518 5109 -1037 2490 174 65 24 chr11 53578956 53579536 -95203936 + L1MA9 LINE L1 4733 5336 -810 2125 125 49 26 chr11 53579543 53579888 -95203584 - THE1B LTR MaLR -11 353 1 8979 113 88 36 chr11 53579888 53581390 -95202082 - THE1B-int LTR MaLR 0 1580 1 2064 145 48 31 chr11 53581390 53581748 -95201724 - THE1B LTR MaLR 0 364 1 4433 166 40 65 chr11 53581748 53582085 -95201387 + L1MA9 LINE L1 5332 5676 -636 1712 185 0 20 chr11 53582085 53582388 -95201084 + AluSq SINE Alu 5 301 -12 4433 166 40 65 chr11 53582388 53583028 -95200444 + L1MA9 LINE L1 5676 6284 -28 460 288 20 34 chr11 53583163 53583455 -95200017 + L1ME LINE L1 5271 5558 -604 272 283 11 0 chr11 53583627 53583719 -95199753 + L1ME LINE L1 5771 5863 -307 523 239 71 15 chr11 53584110 53584307 -95199165 + L1MA9 LINE L1 6066 6273 -39 34 0 0 0 chr11 53584769 53584803 -95198669 + AT_rich Low_complexity Low_complexity 1 34 0 308 24 24 0 chr11 53584818 53584859 -95198613 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 1210 22 0 0 chr11 53584859 53584998 -95198474 - L1PA2 LINE L1 -13 6142 6004 1686 173 0 4 chr11 53584998 53585276 -95198196 - AluSg1 SINE Alu -32 277 1 41140 67 3 1 chr11 53587023 53593167 -95190305 - L1PA4 LINE L1 0 6155 1 1920 199 38 14 chr11 53593532 53593950 -95189522 - MSTA LTR MaLR 0 428 1 8004 192 38 19 chr11 53593995 53595590 -95187882 - MSTA-int LTR MaLR -22 1629 5 2136 154 48 19 chr11 53595593 53596008 -95187464 - MSTA LTR MaLR 0 428 2 710 76 45 19 chr11 53597127 53597284 -95186188 + (TA)n Simple_repeat Simple_repeat 2 162 0 1669 158 4 7 chr11 53598314 53598587 -95184885 + AluSx SINE Alu 40 311 -1 251 322 70 47 chr11 53599321 53599492 -95183980 + LTR16A LTR ERVL 1 175 -275 317 327 0 0 chr11 53599825 53599926 -95183546 - ERVL LTR ERVL -1092 4672 4572 26563 120 36 16 chr11 53599944 53605285 -95178187 - L1PA8 LINE L1 -2 6170 726 957 256 63 34 chr11 53606508 53607027 -95176445 - MLT1H1 LTR MaLR 0 555 59 401 275 104 46 chr11 53607043 53607457 -95176015 - L1MEc LINE L1 -1519 4696 4259 * 975 241 62 99 chr11 53607447 53608122 -95175350 - L1MEc LINE L1 -2661 3554 2905 786 286 42 13 chr11 53608122 53608360 -95175112 - MLT1E LTR MaLR 0 593 349 257 328 66 26 chr11 53608371 53608676 -95174796 - L1MEc LINE L1 -4410 1986 1670 1850 161 3 7 chr11 53609410 53609715 -95173757 - AluSx SINE Alu -8 304 1 472 369 0 12 chr11 53611353 53611521 -95171951 + LTR16A LTR ERVL 3 168 -282 185 286 0 0 chr11 53611783 53611825 -95171647 - MIR SINE MIR -1 261 220 363 282 64 0 chr11 53611853 53611963 -95171509 - ERVL LTR ERVL -1075 4689 4573 271 294 111 20 chr11 53612085 53612238 -95171234 - ERVL LTR ERVL -1098 4387 4221 2134 164 32 15 chr11 53612765 53613174 -95170298 - L1MA9 LINE L1 0 6312 5897 1465 155 75 3 chr11 53613177 53613432 -95170040 + L1MA7 LINE L1 5509 5783 -383 453 14 58 0 chr11 53613432 53613501 -95169971 + (TCTA)n Simple_repeat Simple_repeat 1 73 0 1465 155 75 3 chr11 53613501 53613530 -95169942 + L1MA7 LINE L1 5783 5808 -358 4777 114 14 1 chr11 53613592 53614305 -95169167 - LTR30 LTR ERV1 0 722 1 288 179 77 13 chr11 53614362 53614440 -95169032 + L1MA7 LINE L1 5783 5865 -447 321 159 0 0 chr11 53614451 53614514 -95168958 - L1MA5 LINE L1 -1 6299 6237 325 154 0 0 chr11 53614514 53614566 -95168906 + L1MA7 LINE L1 5833 5884 -407 1327 272 73 17 chr11 53614625 53615349 -95168123 - L1MDa LINE L1 -3152 3063 2299 21 71 0 0 chr11 53615368 53615410 -95168062 + AT_rich Low_complexity Low_complexity 1 42 0 309 276 92 68 chr11 53615463 53615757 -95167715 - L1MDa LINE L1 -4439 1776 1476 612 50 0 0 chr11 53615783 53615863 -95167609 + (TTCC)n Simple_repeat Simple_repeat 2 81 0 1877 209 75 22 chr11 53615863 53616327 -95167145 - LTR2B LTR ERV1 0 490 2 1615 153 89 3 chr11 53616339 53616621 -95166851 - AluSg SINE Alu -2 308 3 384 273 61 57 chr11 53616758 53617055 -95166417 - L1MDa LINE L1 -5037 1359 1062 410 212 173 9 chr11 53617659 53617786 -95165686 - FRAM SINE Alu -4 162 23 1818 134 91 20 chr11 53617786 53618136 -95165336 + THE1C LTR MaLR 1 375 0 2145 117 3 3 chr11 53618142 53618450 -95165022 - AluSq SINE Alu -5 308 1 27 0 0 0 chr11 53621339 53621366 -95162106 + AT_rich Low_complexity Low_complexity 1 27 0 612 272 98 0 chr11 53622433 53622657 -95160815 - MIR SINE MIR -14 248 3 28 48 0 0 chr11 53622774 53622816 -95160656 + AT_rich Low_complexity Low_complexity 1 42 0 1312 64 0 0 chr11 53623603 53623774 -95159698 + L1PA4 LINE L1 5981 6151 -4 7363 90 5 1 chr11 53624752 53625717 -95157755 + LTR5 LTR ERVK 1 969 0 589 272 30 47 chr11 53627025 53627060 -95156412 - MLT1H1 LTR MaLR -33 522 488 2041 90 0 22 chr11 53627060 53627337 -95156135 + AluY SINE Alu 35 305 -6 589 272 30 47 chr11 53627337 53627536 -95155936 - MLT1H1 LTR MaLR -67 488 292 395 327 13 13 chr11 53627689 53627839 -95155633 - MLT1H1 LTR MaLR -347 202 53 401 261 102 45 chr11 53627847 53628268 -95155204 - L1M4 LINE L1 -1512 4634 4190 * 785 311 82 10 chr11 53628261 53628855 -95154617 - L1M4 LINE L1 -2664 3482 2846 559 312 59 15 chr11 53628918 53629120 -95154352 - MLT1E LTR MaLR -21 572 362 25 0 0 0 chr11 53629639 53629664 -95153808 + AT_rich Low_complexity Low_complexity 1 25 0 1289 76 0 6 chr11 53629667 53629838 -95153634 - THE1A LTR MaLR 0 355 186 365 113 0 0 chr11 53629827 53629880 -95153592 - THE1A LTR MaLR -302 53 1 * 2736 10 0 13 chr11 53630497 53630807 -95152665 + AluY SINE Alu 2 307 -4 7030 44 21 0 chr11 53632052 53632956 -95150516 + L1PA4 LINE L1 5235 6155 0 37 39 0 0 chr11 53633133 53633184 -95150288 + AT_rich Low_complexity Low_complexity 1 51 0 459 165 0 0 chr11 53633701 53633786 -95149686 + T-rich Low_complexity Low_complexity 1 85 0 466 317 30 30 chr11 53635958 53636125 -95147347 + LTR16A LTR ERVL 9 175 -275 528 339 57 19 chr11 53636460 53636942 -95146530 - MERVL LTR ERVL -875 4610 4120 381 309 75 34 chr11 53637080 53637375 -95146097 - MERVL LTR ERVL -1761 4003 3697 1770 191 40 5 chr11 53637424 53637828 -95145644 - L1MA9 LINE L1 -3 6309 5892 983 232 75 0 chr11 53637828 53638095 -95145377 + L1MA9 LINE L1 5514 5800 -512 349 232 21 21 chr11 53638110 53638205 -95145267 - L1MA9 LINE L1 -200 6112 6018 431 218 0 0 chr11 53638228 53638315 -95145157 + L1MA9 LINE L1 5783 5869 -443 263 215 0 0 chr11 53638332 53638397 -95145075 - L1MA7 LINE L1 0 6291 6227 300 173 0 0 chr11 53638397 53638449 -95145023 + L1MB1 LINE L1 5834 5885 -304 360 291 21 0 chr11 53638515 53638656 -95144816 - L1M4 LINE L1 -3161 2985 2842 1709 173 42 31 chr11 53638669 53638806 -95144666 - L1PB1 LINE L1 -1 6150 6014 530 274 48 52 chr11 53638806 53639023 -95144449 - L1MA4A LINE L1 -289 6014 5797 417 20 0 0 chr11 53639023 53639073 -95144399 + (TA)n Simple_repeat Simple_repeat 2 51 0 530 274 48 52 chr11 53639073 53639107 -95144365 - L1MA4A LINE L1 -506 5797 5764 391 219 0 0 chr11 53639130 53639226 -95144246 - L1MA9 LINE L1 -202 6110 6015 378 169 42 0 chr11 53639258 53639329 -95144143 + L1MA9 LINE L1 5790 5863 -449 337 113 0 42 chr11 53639351 53639422 -95144050 - L1MA7 LINE L1 0 6291 6224 251 200 0 0 chr11 53639422 53639467 -95144005 + L1M3 LINE L1 5840 5884 -450 898 264 36 9 chr11 53639526 53639855 -95143617 - L1MEd LINE L1 -3152 2977 2640 393 260 107 14 chr11 53639897 53640178 -95143294 - L1MEd LINE L1 -3611 2518 2212 621 296 115 57 chr11 53640439 53640718 -95142754 - L1MEd LINE L1 -4439 1690 1429 1685 68 44 12 chr11 53640718 53640970 -95142502 - L1PA6 LINE L1 0 6154 5895 621 296 115 57 chr11 53640970 53641011 -95142461 - L1MEd LINE L1 -4700 1429 1392 1860 161 6 3 chr11 53641011 53641322 -95142150 - AluSx SINE Alu 0 312 1 621 296 115 57 chr11 53641322 53641828 -95141644 - L1MEd LINE L1 -4737 1392 813 570 211 0 0 chr11 53642331 53642440 -95141032 - FLAM_A SINE Alu -11 131 23 1715 140 91 20 chr11 53642448 53642798 -95140674 + THE1C LTR MaLR 1 375 0 21 36 0 0 chr11 53645257 53645285 -95138187 + AT_rich Low_complexity Low_complexity 1 28 0 610 276 55 51 chr11 53646711 53646968 -95136504 - MIR SINE MIR 0 262 5 42 0 0 0 chr11 53647110 53647152 -95136320 + AT_rich Low_complexity Low_complexity 1 42 0 187 339 32 0 chr11 53647205 53647267 -95136205 - MIR3 SINE MIR -27 181 118 185 211 113 70 chr11 53647909 53647980 -95135492 + L2 LINE L2 3164 3237 -76 41405 44 23 1 chr11 53648029 53654044 -95129428 + L1PA2 LINE L1 3 6151 -4 1341 112 33 0 chr11 53654322 53654537 -95128935 + L1MA7 LINE L1 6070 6291 0 22 0 0 0 chr11 53656540 53656562 -95126910 + AT_rich Low_complexity Low_complexity 1 22 0 721 297 113 33 chr11 53656902 53657379 -95126093 - MLT1H1 LTR MaLR -33 522 53 382 250 133 50 chr11 53657380 53657800 -95125672 - L1M4 LINE L1 -1503 4643 4189 991 288 48 15 chr11 53657875 53658416 -95125056 - L1M4 LINE L1 -2755 3391 2833 680 281 59 18 chr11 53658419 53658640 -95124832 - MLT1E LTR MaLR -2 591 362 1240 106 0 0 chr11 53659186 53659356 -95124116 - THE1A LTR MaLR 0 355 186 391 94 0 0 chr11 53659345 53659398 -95124074 - THE1A LTR MaLR -302 53 1 * 297 188 0 0 chr11 53661948 53662028 -95121444 + T-rich Low_complexity Low_complexity 1 80 0 663 230 198 0 chr11 53662549 53662766 -95120706 - MIR SINE MIR 0 262 3 36 0 0 0 chr11 53662901 53662937 -95120535 + AT_rich Low_complexity Low_complexity 1 36 0 7659 23 0 0 chr11 53664538 53665894 -95117578 - L1PA3 LINE L1 0 6155 4796 2211 47 0 0 chr11 53665894 53666168 -95117304 + L1P LINE L1 4327 4600 -1546 1704 144 56 4 chr11 53666652 53666922 -95116550 + AluSg SINE Alu 1 284 -26 455 319 24 35 chr11 53669150 53669319 -95114153 + LTR16A LTR ERVL 9 175 -275 21 36 0 0 chr11 53669395 53669423 -95114049 + AT_rich Low_complexity Low_complexity 1 28 0 353 355 64 14 chr11 53669659 53669879 -95113593 - ERVL LTR ERVL -1095 4669 4439 425 339 65 29 chr11 53670157 53670541 -95112931 - ERVL LTR ERVL -1575 4079 3682 1751 173 38 34 chr11 53670615 53671032 -95112440 - L1MA9 LINE L1 -2 6310 5892 945 249 50 0 chr11 53671032 53671307 -95112165 + L1MB1 LINE L1 5514 5805 -486 372 206 11 22 chr11 53671318 53671410 -95112062 - L1MA9 LINE L1 -201 6111 6021 423 217 0 0 chr11 53671438 53671521 -95111951 + L1MB1 LINE L1 5783 5865 -324 304 169 0 0 chr11 53671542 53671607 -95111865 - L1MA7 LINE L1 0 6291 6227 321 146 0 2 chr11 53671607 53671662 -95111810 + L1MB1 LINE L1 5834 5887 -269 468 243 29 0 chr11 53671727 53671867 -95111605 - L1M4 LINE L1 -3161 2985 2842 1470 141 52 61 chr11 53671880 53672206 -95111266 - L1PB1 LINE L1 -1 6150 5828 4086 200 41 14 chr11 53672310 53673328 -95110144 + L1 LINE L1 2994 4039 -2107 959 183 44 16 chr11 53673356 53673608 -95109864 + L1PA13 LINE L1 1776 2034 -4753 661 169 149 40 chr11 53674671 53674920 -95108552 + L1ME1 LINE L1 5653 5928 -238 1123 173 28 0 chr11 53675023 53675202 -95108270 - L1P3 LINE L1 -6272 189 6 3213 186 26 4 chr11 53675325 53676018 -95107454 + L1 LINE L1 4623 5330 -816 255 194 32 0 chr11 53676034 53676096 -95107376 + L1PBa LINE L1 6 69 -6794 9571 93 21 4 chr11 53676197 53677598 -95105874 + L1P LINE L1 3786 5211 -935 38 22 0 0 chr11 53677761 53677806 -95105666 + AT_rich Low_complexity Low_complexity 1 45 0 2369 82 0 0 chr11 53677806 53678098 -95105374 - AluSc SINE Alu -17 292 1 428 245 9 0 chr11 53678495 53678601 -95104871 - MIR SINE MIR -50 212 106 289 300 0 0 chr11 53678743 53678848 -95104624 + (TTCA)n Simple_repeat Simple_repeat 1 105 0 420 239 204 70 chr11 53678993 53679278 -95104194 + L1M4 LINE L1 3071 3393 -2753 473 163 93 0 chr11 53679329 53679415 -95104057 + U3 snRNA snRNA 3 96 -121 5084 147 45 17 chr11 53679423 53680382 -95103090 - Ricksha DNA DNA -7 3239 2254 1304 213 82 0 chr11 53680482 53680750 -95102722 - Tigger7 DNA MER2_type -2197 290 1 1287 171 16 26 chr11 53680750 53681059 -95102413 - L1MA7 LINE L1 -68 6223 5698 577 303 132 36 chr11 53681127 53681483 -95101989 + L2 LINE L2 2891 3280 -33 579 81 0 0 chr11 53681641 53681727 -95101745 + (T)n Simple_repeat Simple_repeat 1 86 0 7541 31 0 0 chr11 53681934 53683380 -95100092 - L1PA3 LINE L1 0 6155 4708 7176 34 2 1 chr11 53683380 53684252 -95099220 + L1PA3 LINE L1 3863 4735 -1411 542 256 209 0 chr11 53684558 53684773 -95098699 - MIR SINE MIR 0 262 3 1943 143 3 3 chr11 53687061 53687354 -95096118 + AluSg SINE Alu 1 293 -17 455 319 24 35 chr11 53689502 53689671 -95093801 + LTR16A LTR ERVL 9 175 -275 21 36 0 0 chr11 53689747 53689775 -95093697 + AT_rich Low_complexity Low_complexity 1 28 0 661 337 81 17 chr11 53690011 53690480 -95092992 - ERVL LTR ERVL -1095 4669 4171 1623 157 31 40 chr11 53691036 53691387 -95092085 - L1MA9 LINE L1 -73 6239 5892 948 243 57 0 chr11 53691385 53691662 -95091810 + L1MB1 LINE L1 5510 5805 -486 * 372 206 11 22 chr11 53691673 53691765 -95091707 - L1MA9 LINE L1 -201 6111 6021 423 217 0 0 chr11 53691793 53691876 -95091596 + L1MB1 LINE L1 5783 5865 -447 304 169 0 0 chr11 53691897 53691962 -95091510 - L1MA7 LINE L1 0 6291 6227 297 179 0 4 chr11 53691962 53692026 -95091446 + L1MB1 LINE L1 5834 5896 -258 468 243 29 0 chr11 53692082 53692222 -95091250 - L1M4 LINE L1 -3161 2985 2842 2332 141 54 44 chr11 53692235 53692603 -95090869 - L1PB1 LINE L1 -1 6150 5774 450 0 0 0 chr11 53692603 53692653 -95090819 + (TA)n Simple_repeat Simple_repeat 2 51 0 2332 141 54 44 chr11 53692653 53692786 -95090686 - L1PB1 LINE L1 -377 5774 5644 839 76 0 0 chr11 53692786 53692904 -95090568 + L1PA7 LINE L1 5853 5970 -184 * 1737 119 14 7 chr11 53692902 53693188 -95090284 - L1PB1 LINE L1 -508 5643 5356 725 167 200 45 chr11 53693160 53693405 -95090067 - L1M4 LINE L1 -1195 4951 4669 * 628 289 48 58 chr11 53693416 53693583 -95089889 - L1MC4 LINE L1 -180 7862 7695 387 292 83 0 chr11 53693583 53693703 -95089769 - FLAM_A SINE Alu -3 130 1 628 289 48 58 chr11 53693703 53693947 -95089525 - L1MC4 LINE L1 -347 7695 7455 364 367 127 0 chr11 53693962 53694207 -95089265 + LTR16A LTR ERVL 172 447 -3 26 74 0 0 chr11 53695084 53695138 -95088334 + AT_rich Low_complexity Low_complexity 1 54 0 25 31 0 0 chr11 53695975 53696007 -95087465 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr11 53696739 53696774 -95086698 + AT_rich Low_complexity Low_complexity 1 35 0 1872 190 110 2 chr11 53696827 53697237 -95086235 - L1MB4 LINE L1 -86 6094 5641 344 22 22 0 chr11 53698913 53698958 -95084514 + (TG)n Simple_repeat Simple_repeat 2 47 0 180 304 0 0 chr11 53699068 53699114 -95084358 - L2 LINE L2 -8 3264 3219 21 36 0 0 chr11 53700874 53700902 -95082570 + AT_rich Low_complexity Low_complexity 1 28 0 591 167 24 54 chr11 53700910 53701078 -95082394 - L1MA7 LINE L1 -1 6290 6128 983 267 59 85 chr11 53702450 53702989 -95080483 - MLT1H1 LTR MaLR 0 555 31 2387 109 42 13 chr11 53703673 53704034 -95079438 - THE1C LTR MaLR -7 419 1 4828 121 29 7 chr11 53704034 53704755 -95078717 - THE1C-int LTR MaLR 0 1580 844 1028 168 0 0 chr11 53705087 53705248 -95078224 - MER44D DNA MER2_type -1 604 572 943 265 171 41 chr11 53705254 53705957 -95077515 + LTR1B LTR ERV1 33 826 0 3118 176 25 4 chr11 53705957 53706509 -95076963 - MER44D DNA MER2_type -129 576 13 1696 196 20 0 chr11 53706510 53706811 -95076661 + AluJb SINE Alu 3 309 -3 4018 46 14 0 chr11 53707057 53707555 -95075917 - L1PA4 LINE L1 -3 6152 5648 3663 107 11 97 chr11 53707614 53708312 -95075160 - L1MA5A LINE L1 -3 6294 5657 2960 113 30 34 chr11 53708321 53708334 -95075138 + LTR15 LTR ERV1 1 13 -480 5934 42 1 0 chr11 53708334 53709057 -95074415 + L1PA4 LINE L1 5424 6147 -8 2960 113 30 34 chr11 53709057 53709538 -95073934 + LTR15 LTR ERV1 13 493 0 8029 107 60 17 chr11 53709538 53710781 -95072691 + HERV15 LTR ERV1 1 1296 -7439 * 13865 126 8 6 chr11 53710766 53712858 -95070614 + HERV15 LTR ERV1 2313 4407 -4328 240 314 32 40 chr11 53713908 53714032 -95069440 + L3 LINE CR1 1450 1572 -5 184 245 20 0 chr11 53715208 53715257 -95068215 - MIR3 SINE MIR -1 207 158 339 340 33 16 chr11 53715403 53715706 -95067766 - L1ME4a LINE L1 -199 5922 5615 2054 134 10 3 chr11 53715973 53716280 -95067192 - AluSg SINE Alu -1 309 1 2067 130 7 3 chr11 53716926 53717218 -95066254 + AluSx SINE Alu 3 295 -17 214 204 0 0 chr11 53717488 53717532 -95065940 - L2 LINE L2 -8 3264 3221 189 301 0 27 chr11 53719265 53719338 -95064134 - MIR SINE MIR -6 256 186 997 60 17 34 chr11 53719656 53719890 -95063582 + (TTTC)n Simple_repeat Simple_repeat 1 230 0 234 248 129 0 chr11 53719890 53719991 -95063481 + L1ME LINE L1 5692 5805 -316 205 125 21 21 chr11 53719993 53720041 -95063431 + CT-rich Low_complexity Low_complexity 2 49 0 793 140 28 17 chr11 53720052 53720230 -95063242 + CT-rich Low_complexity Low_complexity 1 180 0 375 121 0 0 chr11 53720228 53720286 -95063186 + (TCCCC)n Simple_repeat Simple_repeat 3 60 0 * 313 301 57 57 chr11 53720711 53720834 -95062638 - MIR SINE MIR -61 147 25 934 139 46 46 chr11 53721963 53722136 -95061336 + MSTA LTR MaLR 255 427 -1 455 213 31 39 chr11 53722147 53722274 -95061198 + MER106A DNA MER1_type 110 235 -1 1821 166 3 3 chr11 53722545 53722835 -95060637 + AluJb SINE Alu 14 303 -9 41366 44 25 1 chr11 53723683 53729684 -95053788 - L1PA3 LINE L1 -1 6154 6 207 355 160 12 chr11 53731061 53731230 -95052242 + MIR SINE MIR 67 260 -2 349 304 45 45 chr11 53731360 53731791 -95051681 + L1M2 LINE L1 5403 5837 -307 35 0 0 0 chr11 53731831 53731866 -95051606 + AT_rich Low_complexity Low_complexity 1 35 0 582 139 28 0 chr11 53731940 53732048 -95051424 - L1MA7 LINE L1 -4 6287 6177 195 42 0 0 chr11 53732387 53732411 -95051061 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 8126 98 4 6 chr11 53732411 53734442 -95049030 - L1PA8 LINE L1 -24 6148 4123 21 0 0 0 chr11 53734445 53734466 -95049006 + AT_rich Low_complexity Low_complexity 1 21 0 8424 43 3 0 chr11 53734466 53736276 -95047196 - L1PA4 LINE L1 -3 6152 4335 5321 35 0 0 chr11 53736276 53736913 -95046559 + L1PA4 LINE L1 3724 4360 -1786 429 250 19 0 chr11 53736976 53737084 -95046388 - MIR SINE MIR -43 219 110 48 18 0 0 chr11 53737307 53737362 -95046110 + AT_rich Low_complexity Low_complexity 1 55 0 945 144 150 6 chr11 53737926 53738106 -95045366 - Tigger5 DNA MER2_type -6 2317 2112 245 318 0 0 chr11 53738114 53738180 -95045292 - Tigger5 DNA MER2_type -2019 304 239 1744 178 3 10 chr11 53738180 53738484 -95044988 + AluJb SINE Alu 1 302 -10 26 0 0 0 chr11 53738803 53738829 -95044643 + AT_rich Low_complexity Low_complexity 1 26 0 251 276 38 29 chr11 53739325 53739430 -95044042 + MIR SINE MIR 137 242 -20 22376 33 1 0 chr11 53739847 53742726 -95040746 - L1P1 LINE L1 -634 5521 2640 3952 18 0 0 chr11 53742726 53743173 -95040299 + L1PA2 LINE L1 5624 6070 -85 342 320 20 40 chr11 53743268 53743418 -95040054 - MIR3 SINE MIR -46 162 16 289 284 74 56 chr11 53743837 53743999 -95039473 + MIR SINE MIR 88 252 -10 194 330 11 32 chr11 53744528 53744622 -95038850 + MIR SINE MIR 37 128 -80 313 315 94 7 chr11 53744942 53745091 -95038381 - LTR16C LTR ERVL -2 489 328 1355 164 99 19 chr11 53746498 53746761 -95036711 - AluJb SINE Alu -26 286 3 189 0 0 0 chr11 53746901 53746922 -95036550 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 312 364 78 37 chr11 53746977 53747351 -95036121 + L2 LINE L2 2921 3309 -4 669 165 0 47 chr11 53747644 53747771 -95035701 + FLAM_A SINE Alu 2 122 -11 2007 117 11 0 chr11 53748061 53748344 -95035128 + AluSg SINE Alu 6 291 -19 330 26 0 0 chr11 53748352 53748391 -95035081 + (CA)n Simple_repeat Simple_repeat 2 40 0 39 80 0 0 chr11 53748391 53748479 -95034993 + AT_rich Low_complexity Low_complexity 1 88 0 521 329 125 45 chr11 53748516 53748981 -95034491 - L2 LINE L2 0 3313 2812 1277 145 48 24 chr11 53749061 53749268 -95034204 - THE1B LTR MaLR 0 364 153 2010 149 42 3 chr11 53749268 53749604 -95033868 - MSTA-int LTR MaLR -1229 351 3 1993 158 129 8 chr11 53749606 53749986 -95033486 - MSTA LTR MaLR 0 428 3 641 165 16 0 chr11 53750073 53750194 -95033278 + L1PB4 LINE L1 6031 6153 -3 1761 138 0 44 chr11 53750370 53750666 -95032806 + AluJo SINE Alu 7 289 -23 1446 292 322 29 chr11 53751326 53752578 -95030894 + L2 LINE L2 1380 2997 -316 2043 130 0 7 chr11 53752611 53752903 -95030569 - AluSx SINE Alu -22 290 1 1447 194 29 39 chr11 53754389 53754698 -95028774 - AluJo SINE Alu -6 306 1 362 207 90 18 chr11 53755119 53755230 -95028242 + L1MC5 LINE L1 7793 7911 -50 257 302 0 28 chr11 53755361 53755467 -95028005 + L1ME3A LINE L1 6068 6170 0 23 33 0 0 chr11 53755632 53755662 -95027810 + AT_rich Low_complexity Low_complexity 1 30 0 483 346 49 21 chr11 53756436 53756679 -95026793 + MIR SINE MIR 12 261 -1 2017 143 6 16 chr11 53757215 53757530 -95025942 + AluSq SINE Alu 1 312 -1 21 0 0 0 chr11 53758634 53758655 -95024817 + AT_rich Low_complexity Low_complexity 1 21 0 309 319 104 35 chr11 53758725 53759013 -95024459 - L1ME4a LINE L1 -265 5856 5549 896 235 52 0 chr11 53759356 53759607 -95023865 - L1MD3 LINE L1 -1 7994 7731 6165 27 0 1 chr11 53759765 53760512 -95022960 - L1HS LINE L1 -781 5365 4620 7124 1 0 2 chr11 53760512 53761309 -95022163 + L1HS LINE L1 5361 6155 0 285 100 0 0 chr11 53761317 53761367 -95022105 + (A)n Simple_repeat Simple_repeat 1 50 0 189 0 0 0 chr11 53761646 53761667 -95021805 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 3110 45 0 0 chr11 53761680 53762059 -95021413 - L1PA5 LINE L1 -6 6148 5770 1635 58 0 0 chr11 53762068 53762274 -95021198 - L1PA4 LINE L1 -4 6151 5946 299 269 61 96 chr11 53762407 53762604 -95020868 - MIR SINE MIR -51 211 22 220 287 172 16 chr11 53763590 53763712 -95019760 + MIR SINE MIR 12 152 -110 539 294 0 6 chr11 53764077 53764240 -95019232 - MER117 DNA MER1_type -34 163 2 3564 140 24 5 chr11 53765596 53766410 -95017062 + HERVH48 LTR ERV1 3384 4250 -2404 * 11280 120 39 4 chr11 53766400 53768077 -95015395 + HERVH48 LTR ERV1 4919 6654 0 1004 144 0 7 chr11 53768077 53768230 -95015242 + MER48 LTR ERV1 1 152 -235 1799 121 4 0 chr11 53768275 53768524 -95014948 + MER48 LTR ERV1 138 387 0 1302 109 136 0 chr11 53768526 53768747 -95014725 - MER4A-int LTR ERV1 -6347 251 1 1611 153 3 77 chr11 53768751 53769124 -95014348 - MER4A LTR ERV1 0 664 261 1568 126 102 26 chr11 53769476 53769846 -95013626 + LTR7 LTR ERV1 1 450 0 1012 195 36 7 chr11 53769846 53770135 -95013337 + HERVH LTR ERV1 1 332 -7381 * 8099 243 63 47 chr11 53770121 53772994 -95010478 + HERVH LTR ERV1 2100 5020 -2693 3190 120 14 16 chr11 53772984 53773501 -95009971 + HERVH LTR ERV1 7198 7713 0 * 2061 176 43 25 chr11 53773501 53773943 -95009529 + LTR7 LTR ERV1 1 450 0 21 0 0 0 chr11 53774515 53774536 -95008936 + AT_rich Low_complexity Low_complexity 1 21 0 230 209 0 0 chr11 53775276 53775319 -95008153 + L1ME LINE L1 5682 5724 -446 292 143 18 0 chr11 53775957 53776013 -95007459 + L1PA16 LINE L1 6088 6144 -22 1772 174 17 20 chr11 53776524 53776868 -95006604 - MER61A LTR ERV1 0 343 1 180 283 25 158 chr11 53777061 53777181 -95006291 - L2 LINE L2 -1 3271 3168 21 0 0 0 chr11 53777271 53777292 -95006180 + AT_rich Low_complexity Low_complexity 1 21 0 5840 37 0 23 chr11 53777294 53777768 -95005704 - L1PA5 LINE L1 -8 6146 5693 2460 19 0 0 chr11 53777768 53778039 -95005433 - AluYa5 SINE Alu -6 305 35 5840 37 0 23 chr11 53778039 53778290 -95005182 - L1PA5 LINE L1 -461 5693 5438 185 65 32 0 chr11 53779958 53779989 -95003483 + (TA)n Simple_repeat Simple_repeat 2 33 0 299 104 26 26 chr11 53780012 53780089 -95003383 + (TA)n Simple_repeat Simple_repeat 2 78 0 3323 73 170 4 chr11 53780332 53780839 -95002633 + LTR10C LTR ERV1 1 591 0 21 57 0 0 chr11 53781617 53781652 -95001820 + AT_rich Low_complexity Low_complexity 1 35 0 27 49 0 0 chr11 53781795 53781836 -95001636 + AT_rich Low_complexity Low_complexity 1 41 0 10688 134 50 14 chr11 53783860 53785823 -94997649 - MER4-int LTR ERV1 -648 5950 3918 807 157 25 89 chr11 53785861 53786097 -94997375 - MER4-int LTR ERV1 -4539 2219 1999 2910 128 51 94 chr11 53786098 53786701 -94996771 - LTR14B LTR ERVK 0 608 32 1607 101 25 0 chr11 53786701 53786979 -94996493 - MER4-int LTR ERV1 -3577 3021 2737 1023 189 137 9 chr11 53786979 53787206 -94996266 + LTR8 LTR ERV1 1 256 -435 2393 123 9 0 chr11 53787211 53787553 -94995919 + L1P LINE L1 9 353 -5793 15130 55 3 0 chr11 53787554 53790243 -94993229 + L1PA4 LINE L1 3456 6148 -7 1349 255 72 34 chr11 53790255 53790340 -94993132 + L1M1 LINE L1 2766 2846 -4719 189 0 0 0 chr11 53790340 53790361 -94993111 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1349 255 72 34 chr11 53790361 53791361 -94992111 + L1M1 LINE L1 2846 3905 -3660 888 178 49 0 chr11 53791368 53791531 -94991941 + FRAM SINE Alu 1 168 -8 32 43 0 0 chr11 53791539 53791585 -94991887 + AT_rich Low_complexity Low_complexity 1 46 0 4265 201 52 40 chr11 53791661 53791986 -94991486 + L1MC1 LINE L1 4073 4393 -1940 198 0 0 0 chr11 53791986 53792008 -94991464 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 1367 199 3 62 chr11 53792016 53792323 -94991149 - AluJo SINE Alu -23 289 1 4265 201 52 40 chr11 53792323 53793127 -94990345 + L1MC1 LINE L1 4399 5192 -1141 2050 154 30 30 chr11 53793127 53793491 -94989981 + THE1B LTR MaLR 1 364 0 4265 201 52 40 chr11 53793491 53794118 -94989354 + L1MC1 LINE L1 5192 5871 -462 1943 143 7 3 chr11 53794118 53794425 -94989047 + AluSg SINE Alu 1 308 -2 4265 201 52 40 chr11 53794425 53794888 -94988584 + L1MC1 LINE L1 5871 6327 -6 744 180 74 67 chr11 53794905 53795276 -94988196 + L1MC/D LINE L1 5115 5505 -758 267 31 0 0 chr11 53795679 53795711 -94987761 + (TTG)n Simple_repeat Simple_repeat 1 32 0 1631 176 14 21 chr11 53795711 53796001 -94987471 + AluJb SINE Alu 3 290 -22 324 135 19 0 chr11 53797570 53797622 -94985850 + MER4A LTR ERV1 261 313 -351 1169 140 0 11 chr11 53797641 53797820 -94985652 + MER4A LTR ERV1 488 664 0 1485 76 124 0 chr11 53797824 53798049 -94985423 + MER4A-int LTR ERV1 1 253 -6345 2263 119 28 96 chr11 53798049 53798476 -94984996 - MER48 LTR ERV1 0 398 1 11663 119 21 3 chr11 53798476 53800162 -94983310 - HERVH48 LTR ERV1 0 6654 4939 11061 155 19 8 chr11 53800164 53802459 -94981013 - HERVH48 LTR ERV1 -2404 4250 1600 41977 56 2 6 chr11 53802460 53808638 -94974834 - L1PA3 LINE L1 0 6155 9 1023 189 137 9 chr11 53808643 53808870 -94974602 - LTR8 LTR ERV1 -435 256 1 1606 94 29 0 chr11 53808870 53809147 -94974325 + MER4B-int LTR ERV1 2737 3021 -3577 2922 126 51 94 chr11 53809147 53809750 -94973722 + LTR14B LTR ERVK 32 608 0 819 153 25 89 chr11 53809751 53809987 -94973485 + MER4B-int LTR ERV1 1999 2219 -4539 10667 134 50 14 chr11 53810025 53811988 -94971484 + MER4B-int LTR ERV1 3918 5950 -648 26 50 0 0 chr11 53814013 53814053 -94969419 + AT_rich Low_complexity Low_complexity 1 40 0 21 57 0 0 chr11 53814196 53814231 -94969241 + AT_rich Low_complexity Low_complexity 1 35 0 3336 71 170 4 chr11 53815009 53815516 -94967956 - LTR10C LTR ERV1 0 591 1 299 104 26 26 chr11 53815759 53815836 -94967636 + (TA)n Simple_repeat Simple_repeat 2 78 0 185 65 32 0 chr11 53815859 53815890 -94967582 + (TA)n Simple_repeat Simple_repeat 2 33 0 1879 37 4 0 chr11 53816995 53817240 -94966232 + L1P LINE L1 5134 5379 -767 1985 139 7 3 chr11 53817342 53817651 -94965821 - AluSg SINE Alu 0 310 1 3677 210 52 42 chr11 53817651 53818278 -94965194 - L1MC1 LINE L1 -480 5853 5234 2050 154 30 30 chr11 53818278 53818642 -94964830 - THE1B LTR MaLR 0 364 1 3677 210 52 42 chr11 53818642 53819446 -94964026 - L1MC1 LINE L1 -1099 5234 4439 1352 202 3 62 chr11 53819446 53819753 -94963719 + AluJo SINE Alu 1 289 -23 198 0 0 0 chr11 53819761 53819783 -94963689 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 3677 210 52 42 chr11 53819783 53820108 -94963364 - L1MC1 LINE L1 -1900 4433 4073 32 43 0 0 chr11 53820184 53820230 -94963242 + AT_rich Low_complexity Low_complexity 1 46 0 873 184 49 0 chr11 53820238 53820401 -94963071 - FRAM SINE Alu -8 168 1 1349 254 72 35 chr11 53820408 53821409 -94962063 - L1 LINE L1 -3660 3905 2846 189 0 0 0 chr11 53821409 53821430 -94962042 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1349 254 72 35 chr11 53821430 53821515 -94961957 - L1 LINE L1 -4719 2846 2766 15197 52 2 0 chr11 53821527 53824216 -94959256 - L1PA4 LINE L1 -7 6148 3456 2461 123 9 0 chr11 53824217 53824567 -94958905 - L1P LINE L1 -5793 353 1 2412 269 44 36 chr11 53824567 53825581 -94957891 - L1M2c LINE L1 -4483 1868 853 507 266 17 40 chr11 53825828 53826001 -94957471 - L1M2c LINE L1 -6111 170 2 911 198 27 11 chr11 53826014 53826315 -94957157 - L1M4c LINE L1 -557 5853 1352 430 362 19 10 chr11 53827094 53827301 -94956171 - MIR SINE MIR -46 216 8 255 125 0 0 chr11 53827994 53828034 -94955438 + (TG)n Simple_repeat Simple_repeat 2 41 0 26 30 0 0 chr11 53828213 53828246 -94955226 + AT_rich Low_complexity Low_complexity 1 33 0 260 292 46 46 chr11 53828742 53828872 -94954600 + L3 LINE CR1 1375 1504 -73 317 192 0 0 chr11 53830552 53830604 -94952868 - Alu SINE Alu -15 287 236 562 304 109 29 chr11 53831733 53832082 -94951390 + L1MC3 LINE L1 5381 5757 -2051 210 71 0 0 chr11 53832163 53832191 -94951281 + (CA)n Simple_repeat Simple_repeat 1 28 0 206 293 190 0 chr11 53832857 53832973 -94950499 + L2 LINE L2 3175 3312 -1 351 100 20 0 chr11 53833150 53833200 -94950272 - MER66B LTR ERV1 -140 346 296 1026 251 61 3 chr11 53833954 53834281 -94949191 + L1MC3 LINE L1 6709 7054 -731 498 186 32 8 chr11 53834302 53834426 -94949046 - L1MA5 LINE L1 -1 6299 6173 32 0 0 0 chr11 53834426 53834458 -94949014 + AT_rich Low_complexity Low_complexity 1 32 0 5382 115 60 6 chr11 53834462 53834495 -94948977 - L1MA1 LINE L1 0 6302 6272 2411 134 0 11 chr11 53834495 53834860 -94948612 + THE1B LTR MaLR 3 363 -1 495 0 0 0 chr11 53834860 53834915 -94948557 + (TA)n Simple_repeat Simple_repeat 2 56 0 5382 115 60 6 chr11 53834915 53835744 -94947728 - L1MA1 LINE L1 -29 6273 5392 723 124 0 0 chr11 53835744 53835849 -94947623 - AluSp/q SINE Alu -17 296 192 2594 43 3 0 chr11 53836070 53836374 -94947098 - AluY SINE Alu -6 305 1 950 145 47 47 chr11 53837101 53837294 -94946178 - L1MA8 LINE L1 -273 6018 5826 613 216 43 19 chr11 53837294 53837423 -94946049 + L1MA8 LINE L1 6123 6258 -33 1599 192 39 9 chr11 53837423 53837756 -94945716 + MER2 DNA MER2_type 1 343 -1 613 216 43 19 chr11 53837756 53837788 -94945684 + L1MA8 LINE L1 6258 6288 -3 258 105 0 0 chr11 53837910 53837948 -94945524 + (TG)n Simple_repeat Simple_repeat 2 39 0 288 239 43 58 chr11 53837965 53838103 -94945369 + MER113 DNA MER1_type? 337 472 -49 243 270 148 0 chr11 53838397 53838512 -94944960 - MIR SINE MIR -26 236 105 1831 148 3 40 chr11 53839162 53839486 -94943986 + AluSx SINE Alu 1 312 0 725 252 53 65 chr11 53839935 53840181 -94943291 + MIR SINE MIR 13 255 -7 718 210 25 6 chr11 53840469 53840626 -94942846 + MLT1C LTR MaLR 5 164 -303 472 72 43 0 chr11 53840651 53840720 -94942752 - MER41A LTR ERV1 -93 461 390 * 1040 214 74 30 chr11 53840715 53841014 -94942458 + MLT1C LTR MaLR 156 467 0 271 336 1 22 chr11 53842110 53842211 -94941261 + MIR SINE MIR 11 110 -98 1039 33 40 0 chr11 53842255 53842406 -94941066 + (TAGA)n Simple_repeat Simple_repeat 2 158 0 8064 102 48 32 chr11 53842407 53843572 -94939900 + HSMAR1 DNA Mariner 1 1189 -98 2096 69 4 0 chr11 53843572 53843846 -94939626 + L1PA8 LINE L1 5886 6160 -12 8064 102 48 32 chr11 53843846 53843942 -94939530 + HSMAR1 DNA Mariner 1189 1282 -5 213 125 62 0 chr11 53843944 53843992 -94939480 + (TA)n Simple_repeat Simple_repeat 1 51 0 5364 150 12 0 chr11 53844209 53845096 -94938376 - L1PA15 LINE L1 -1 6815 5918 23 0 0 0 chr11 53845109 53845132 -94938340 + AT_rich Low_complexity Low_complexity 1 23 0 20968 48 1 0 chr11 53845132 53849159 -94934313 - L1PA4 LINE L1 0 6155 2127 387 171 0 0 chr11 53849158 53849228 -94934244 - L1 LINE L1 -874 5272 5203 * 14148 226 26 44 chr11 53849242 53850135 -94933337 - L1PA15 LINE L1 -908 5889 4981 1952 145 0 3 chr11 53850135 53850424 -94933048 - AluSc SINE Alu -21 288 1 14148 226 26 44 chr11 53850424 53852376 -94931096 - L1PA15 LINE L1 -1816 4981 2995 1765 124 0 29 chr11 53852376 53852649 -94930823 - AluSq SINE Alu -15 298 34 14148 226 26 44 chr11 53852649 53853487 -94929985 - L1PA15 LINE L1 -3802 2995 2143 2650 112 0 3 chr11 53853487 53853852 -94929620 + THE1B LTR MaLR 1 364 0 14148 226 26 44 chr11 53853852 53854454 -94929018 - L1PA15 LINE L1 -4654 2143 1673 290 44 0 22 chr11 53854454 53854499 -94928973 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 14148 226 26 44 chr11 53854499 53854995 -94928477 - L1PA15 LINE L1 -5124 1673 1170 345 186 0 0 chr11 53855031 53855090 -94928382 + HERVL74 LTR ERVL 1163 1221 -4464 5567 132 0 23 chr11 53855123 53855783 -94927689 - L1PA13 LINE L1 -5 6158 5499 2003 116 0 39 chr11 53855783 53856093 -94927379 - AluY SINE Alu -13 298 1 5567 132 0 23 chr11 53856093 53856481 -94926991 - L1PA13 LINE L1 -664 5499 5104 2226 161 96 0 chr11 53856496 53856913 -94926559 + L1PB1 LINE L1 5695 6151 0 267 266 65 0 chr11 53856904 53857028 -94926444 + L1MEc LINE L1 2166 2297 -4099 * 1209 120 0 0 chr11 53857060 53857227 -94926245 + AluY SINE Alu 1 167 -144 917 77 0 46 chr11 53857282 53857412 -94926060 + AluSg/x SINE Alu 178 301 -11 6871 255 65 18 chr11 53857420 53860032 -94923440 + L1MEc LINE L1 2352 5085 -1130 379 331 68 0 chr11 53860641 53860789 -94922683 + MIR SINE MIR 105 262 0 226 333 139 8 chr11 53862078 53862207 -94921265 - MIR3 SINE MIR -30 178 33 246 392 0 0 chr11 53862591 53862688 -94920784 + MIR SINE MIR 16 112 -150 22 56 0 0 chr11 53863704 53863740 -94919732 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr11 53863922 53863943 -94919529 + AT_rich Low_complexity Low_complexity 1 21 0 1046 281 63 35 chr11 53865649 53865860 -94917612 - L1ME3A LINE L1 -1 6169 5965 2055 108 0 0 chr11 53865860 53866183 -94917289 + AluSg SINE Alu 1 323 0 1046 281 63 35 chr11 53866183 53866459 -94917013 - L1ME3A LINE L1 -205 5965 5665 294 290 79 30 chr11 53867259 53867662 -94915810 + L1MEd LINE L1 792 1214 -4905 26 30 0 0 chr11 53867716 53867749 -94915723 + AT_rich Low_complexity Low_complexity 1 33 0 1923 134 7 0 chr11 53867758 53868034 -94915438 + AluSp SINE Alu 5 282 -31 207 0 0 0 chr11 53868037 53868060 -94915412 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2130 109 3 0 chr11 53868597 53868882 -94914590 - AluSg SINE Alu -24 286 1 21 0 0 0 chr11 53869222 53869243 -94914229 + AT_rich Low_complexity Low_complexity 1 21 0 1108 254 18 0 chr11 53869502 53869829 -94913643 + L1MC1 LINE L1 4977 5309 -837 432 110 0 27 chr11 53869820 53869893 -94913579 + L1PA13 LINE L1 5721 5791 -377 * 261 208 0 0 chr11 53869893 53869965 -94913507 + (TA)n Simple_repeat Simple_repeat 1 72 0 1887 134 62 19 chr11 53869967 53870288 -94913184 + L1PA13 LINE L1 5782 6116 -47 4607 184 29 43 chr11 53870298 53871351 -94912121 + L1MC1 LINE L1 5290 6328 -5 859 254 95 2 chr11 53871574 53871920 -94911552 + L1ME2 LINE L1 5798 6334 0 2922 91 0 0 chr11 53871963 53872358 -94911114 - L1PA13 LINE L1 -231 5932 5538 1366 186 18 59 chr11 53872360 53872699 -94910773 + L1MB8 LINE L1 5849 6173 -5 21 0 0 0 chr11 53872884 53872905 -94910567 + AT_rich Low_complexity Low_complexity 1 21 0 1597 230 94 36 chr11 53873018 53873488 -94909984 + MLT1D LTR MaLR 9 505 0 28 0 0 0 chr11 53874150 53874178 -94909294 + AT_rich Low_complexity Low_complexity 1 28 0 225 273 91 0 chr11 53877876 53877964 -94905508 + MIR SINE MIR 103 198 -64 21 0 0 0 chr11 53878209 53878230 -94905242 + AT_rich Low_complexity Low_complexity 1 21 0 354 383 143 42 chr11 53878395 53878962 -94904510 - HAL1 LINE L1 -1883 624 1 997 346 56 31 chr11 53880159 53880870 -94902602 - HERVL LTR ERVL -882 4772 4044 381 329 71 30 chr11 53880925 53881377 -94902095 - HERVL LTR ERVL -1331 3851 3422 23 0 0 0 chr11 53882206 53882229 -94901243 + AT_rich Low_complexity Low_complexity 1 23 0 393 304 112 6 chr11 53882231 53882392 -94901080 - MIR SINE MIR -7 255 78 296 227 213 27 chr11 53883092 53883242 -94900230 + MLT1K LTR MaLR 240 417 -171 2664 208 75 11 chr11 53883834 53884620 -94898852 + MER73 LTR ERVL 1 640 -4 21 82 0 0 chr11 53885745 53885794 -94897678 + AT_rich Low_complexity Low_complexity 1 49 0 268 339 23 6 chr11 53886132 53886306 -94897166 + CT-rich Low_complexity Low_complexity 2 178 0 195 167 0 0 chr11 53886523 53886565 -94896907 + (ATGGTG)n Simple_repeat Simple_repeat 2 43 0 285 182 0 0 chr11 53886842 53886897 -94896575 + (TG)n Simple_repeat Simple_repeat 2 56 0 263 340 22 12 chr11 53886922 53887025 -94896447 + MIR SINE MIR 14 117 -104 259 316 47 2 chr11 53887230 53887367 -94896105 + L1ME LINE L1 5511 5661 -460 318 260 7 14 chr11 53887385 53887531 -94895941 + (CATATA)n Simple_repeat Simple_repeat 2 146 0 204 315 60 47 chr11 53887816 53887965 -94895507 + L2 LINE L2 2888 3038 -234 248 327 50 10 chr11 53888883 53888984 -94894488 + MIR SINE MIR 88 192 -70 255 296 42 63 chr11 53889542 53889684 -94893788 - MIR3 SINE MIR -46 162 24 517 314 29 25 chr11 53890076 53890280 -94893192 + MIR SINE MIR 57 261 -1 197 349 57 0 chr11 53890520 53890626 -94892846 + MIR SINE MIR 132 243 -19 323 387 7 0 chr11 53890658 53890795 -94892677 + MIR SINE MIR 18 155 -107 1568 169 36 0 chr11 53892204 53892482 -94890990 - AluJb SINE Alu -23 289 2 23 33 0 0 chr11 53892606 53892636 -94890836 + AT_rich Low_complexity Low_complexity 1 30 0 818 249 110 25 chr11 53892908 53893225 -94890247 - MER2 DNA MER2_type 0 344 1 455 330 94 11 chr11 53893392 53893668 -94889804 + L1MEc LINE L1 80 378 -6018 605 287 105 5 chr11 53894346 53894555 -94888917 - MIR SINE MIR 0 262 33 342 377 134 21 chr11 53894646 53894885 -94888587 - L2 LINE L2 -2805 509 244 215 267 256 0 chr11 53895066 53895152 -94888320 + L2 LINE L2 3187 3294 -19 580 251 137 0 chr11 53895207 53895382 -94888090 + MLT1J LTR MaLR 1 199 -312 2325 112 8 3 chr11 53895852 53896210 -94887262 - L1PA13 LINE L1 0 6163 5804 2185 97 7 0 chr11 53896212 53896512 -94886960 + L1P4 LINE L1 5414 5715 -448 23 0 0 0 chr11 53898079 53898102 -94885370 + AT_rich Low_complexity Low_complexity 1 23 0 390 353 35 13 chr11 53898111 53898428 -94885044 + MER113 DNA MER1_type? 198 521 0 21 71 0 0 chr11 53899361 53899403 -94884069 + AT_rich Low_complexity Low_complexity 1 42 0 1096 155 40 0 chr11 53900653 53900879 -94882593 - L1MB3 LINE L1 -4 6179 5945 1301 150 0 17 chr11 53900879 53901110 -94882362 - L1MA4 LINE L1 -5 6295 6066 492 242 0 50 chr11 53901249 53901431 -94882041 - L1M4 LINE L1 -2169 3977 3805 343 297 19 7 chr11 53901445 53901600 -94881872 + L1M4 LINE L1 3651 3807 -2339 22 35 0 0 chr11 53901878 53901907 -94881565 + AT_rich Low_complexity Low_complexity 1 29 0 1231 92 0 12 chr11 53902090 53902263 -94881209 + AluSg/x SINE Alu 137 307 -5 235 303 55 28 chr11 53902362 53902471 -94881001 + HAL1b LINE L1 379 490 -858 22 35 0 0 chr11 53902939 53902968 -94880504 + AT_rich Low_complexity Low_complexity 1 29 0 1068 142 89 0 chr11 53905438 53905628 -94877844 + L1PA16 LINE L1 5947 6153 -13 32 26 0 0 chr11 53905881 53905920 -94877552 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr11 53907603 53907624 -94875848 + AT_rich Low_complexity Low_complexity 1 21 0 200 321 24 24 chr11 53907977 53908061 -94875411 + MIR3 SINE MIR 123 206 -2 345 281 48 100 chr11 53908184 53908336 -94875136 - MIR3 SINE MIR -49 159 40 348 24 0 0 chr11 53908769 53908810 -94874662 + (TA)n Simple_repeat Simple_repeat 1 41 0 23 0 0 0 chr11 53910435 53910458 -94873014 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr11 53910588 53910616 -94872856 + AT_rich Low_complexity Low_complexity 1 28 0 226 269 13 13 chr11 53910659 53910737 -94872735 - LTR50 LTR ERVL -717 78 1 2739 179 33 47 chr11 53910781 53911395 -94872077 - MER6A DNA MER2_type 0 605 1 41638 41 21 1 chr11 53911645 53917672 -94865800 + L1PA2 LINE L1 1 6150 -5 1266 314 88 50 chr11 53917871 53918725 -94864747 - ERVL LTR ERVL -280 5484 4599 1511 180 17 89 chr11 53918727 53919133 -94864339 - MLT1B LTR MaLR 0 390 14 27 0 0 0 chr11 53919760 53919787 -94863685 + AT_rich Low_complexity Low_complexity 1 27 0 520 135 45 0 chr11 53920062 53920151 -94863321 - AluS SINE Alu -220 93 1 935 263 117 53 chr11 53920197 53920535 -94862937 + L1ME3A LINE L1 5476 5870 -300 2186 101 0 0 chr11 53920535 53920831 -94862641 + AluY SINE Alu 1 296 -15 935 263 117 53 chr11 53920831 53921081 -94862391 + L1ME3A LINE L1 5870 6102 -68 339 336 29 0 chr11 53921535 53921672 -94861800 + MER46C DNA MER2_type 149 289 -49 447 325 142 12 chr11 53922017 53922623 -94860849 + L1ME3 LINE L1 3554 4238 -1908 5587 37 0 0 chr11 53922771 53923612 -94859860 - L1PA4 LINE L1 -232 5923 5083 1861 234 45 32 chr11 53923721 53924251 -94859221 - LTR55 LTR ERV -11 537 1 499 333 67 28 chr11 53924341 53924806 -94858666 + L1ME3 LINE L1 5417 5899 -263 220 241 9 27 chr11 53924853 53924965 -94858507 + (TA)n Simple_repeat Simple_repeat 1 110 0 31 58 0 0 chr11 53925112 53925164 -94858308 + AT_rich Low_complexity Low_complexity 1 52 0 3150 44 0 0 chr11 53925275 53925665 -94857807 - L1PA3 LINE L1 -945 5201 4812 7482 32 5 0 chr11 53925665 53926602 -94856870 + L1PA3 LINE L1 5214 6154 -1 4757 253 139 28 chr11 53927183 53928892 -94854580 + L1M3e LINE L1 1 1519 -5587 273 89 0 0 chr11 53928892 53928937 -94854535 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 4757 253 139 28 chr11 53928937 53929625 -94853847 + L1M3e LINE L1 1519 2129 -4977 531 43 0 0 chr11 53929625 53929695 -94853777 + (CA)n Simple_repeat Simple_repeat 2 71 0 4757 253 139 28 chr11 53929695 53930432 -94853040 + L1M3e LINE L1 2129 3173 -3933 285 162 0 0 chr11 53930474 53930539 -94852933 + L1M3e LINE L1 3162 3226 -3880 210 224 0 35 chr11 53930656 53930714 -94852758 + T-rich Low_complexity Low_complexity 4 59 0 24 100 0 0 chr11 53930864 53930944 -94852528 + AT_rich Low_complexity Low_complexity 1 80 0 497 244 73 8 chr11 53931196 53931319 -94852153 - MER2 DNA MER2_type 0 345 215 4839 29 0 12 chr11 53931319 53931904 -94851568 - L1PA4 LINE L1 0 6155 5578 766 11 0 0 chr11 53931906 53931995 -94851477 + L1PA4 LINE L1 5496 5584 -571 1192 181 56 0 chr11 53931997 53932213 -94851259 - MER2 DNA MER2_type -116 229 2 207 306 0 0 chr11 53932214 53932286 -94851186 + (CATATA)n Simple_repeat Simple_repeat 5 76 0 422 130 78 0 chr11 53933329 53933406 -94850066 + L1PA3 LINE L1 6070 6152 -3 701 198 36 0 chr11 53933617 53933784 -94849688 - L1MB4 LINE L1 -166 6014 5842 911 204 10 97 chr11 53933829 53934138 -94849334 - L1MB4 LINE L1 -462 5721 5440 345 161 42 93 chr11 53934175 53934293 -94849179 - L1MB1 LINE L1 -3 6165 6054 734 202 43 29 chr11 53934319 53934623 -94848849 - L1MB4 LINE L1 -729 5451 5141 228 272 0 22 chr11 53934641 53934733 -94848739 - L1MC4 LINE L1 -1339 6703 6614 278 148 19 0 chr11 53934733 53934787 -94848685 + (CATATA)n Simple_repeat Simple_repeat 6 60 0 299 261 0 0 chr11 53934793 53934862 -94848610 - L1MB4 LINE L1 -1034 5112 5044 2604 122 24 19 chr11 53934871 53935288 -94848184 + MSTA LTR MaLR 7 425 -3 4370 230 31 33 chr11 53935293 53936117 -94847355 - L1MB4 LINE L1 -1103 5043 4222 2201 116 10 3 chr11 53936117 53936428 -94847044 + AluSq SINE Alu 1 313 0 4370 230 31 33 chr11 53936428 53936941 -94846531 - L1MB4 LINE L1 -1924 4222 3709 248 247 91 73 chr11 53937074 53937293 -94846179 + L1ME4a LINE L1 5857 6079 -42 309 68 0 0 chr11 53938681 53938725 -94844747 + (TA)n Simple_repeat Simple_repeat 1 44 0 201 222 22 0 chr11 53939237 53939282 -94844190 - L2 LINE L2 0 3313 3268 403 289 107 0 chr11 53939386 53939545 -94843927 - L2 LINE L2 -2456 858 683 283 351 19 7 chr11 53942351 53942505 -94840967 - MLT1H LTR MaLR -388 161 6 1233 263 35 21 chr11 53943188 53943736 -94839736 - L1ME LINE L1 -464 5702 5153 329 256 85 78 chr11 53943743 53944001 -94839471 + L1MC/D LINE L1 4646 4905 -1241 229 276 29 9 chr11 53944109 53944214 -94839258 + L1MC/D LINE L1 5128 5234 -912 31 44 0 0 chr11 53944254 53944299 -94839173 + AT_rich Low_complexity Low_complexity 1 45 0 230 247 14 0 chr11 53944322 53944395 -94839077 + L1MC/D LINE L1 5357 5430 -2565 826 249 86 17 chr11 53944650 53945055 -94838417 - Charlie4a DNA MER1_type -16 492 60 4112 206 16 26 chr11 53945100 53945278 -94838194 - L1MB1 LINE L1 -85 6083 5905 1912 207 204 91 chr11 53945278 53946192 -94837280 - LTR28 LTR ERV1 -3 1017 1 4112 206 16 26 chr11 53946192 53947153 -94836319 - L1MB1 LINE L1 -263 5905 4968 2806 13 0 0 chr11 53947153 53947464 -94836008 - AluY SINE Alu 0 311 1 4112 206 16 26 chr11 53947464 53947918 -94835554 - L1MB1 LINE L1 -1200 4968 4511 1893 236 33 19 chr11 53947919 53948533 -94834939 + L1 LINE L1 3100 3721 -2425 254 308 50 17 chr11 53948736 53948856 -94834616 + MLT1J2 LTR MaLR 263 386 -64 466 212 137 0 chr11 53953461 53953607 -94829865 - L1MD1 LINE L1 -7 6235 6070 248 333 71 8 chr11 53953904 53954030 -94829442 - MLT1H LTR MaLR -387 162 29 1430 236 12 108 chr11 53955817 53956384 -94827088 - MLT2B1 LTR ERVL 0 520 8 2130 134 0 0 chr11 53956515 53956821 -94826651 + AluSc SINE Alu 1 306 -3 258 247 47 59 chr11 53957146 53957231 -94826241 + LTR50 LTR ERVL 590 673 -122 358 353 40 22 chr11 53957687 53957959 -94825513 + ERVL LTR ERVL 2808 3084 -2680 1177 276 66 42 chr11 53958040 53958569 -94824903 + MLT1F LTR MaLR 1 542 0 1587 163 158 13 chr11 53958571 53958945 -94824527 - MSTA LTR MaLR 0 428 1 450 328 49 16 chr11 53959090 53959398 -94824074 + MLT1F-int LTR MaLR 294 611 -760 219 114 0 0 chr11 53959776 53959811 -94823661 + (CA)n Simple_repeat Simple_repeat 2 36 0 1727 252 56 21 chr11 53960506 53960678 -94822794 - MER74A LTR ERVL -24 534 369 2133 107 3 3 chr11 53960678 53960968 -94822504 - AluSx SINE Alu -20 292 3 1727 252 56 21 chr11 53960968 53961310 -94822162 - MER74A LTR ERVL -189 369 2 454 278 121 6 chr11 53961310 53961676 -94821796 + MLT1F1 LTR MaLR 58 510 -57 2262 104 3 7 chr11 53961863 53962172 -94821300 + AluY SINE Alu 1 308 -3 30 77 0 0 chr11 53962335 53962400 -94821072 + AT_rich Low_complexity Low_complexity 1 65 0 249 83 0 0 chr11 53963236 53963272 -94820200 + (CA)n Simple_repeat Simple_repeat 1 36 0 434 310 52 52 chr11 53963492 53963840 -94819632 - L1 LINE L1 -1207 4939 4592 239 256 85 23 chr11 53964015 53964144 -94819328 - L1 LINE L1 -1728 4418 4282 403 69 0 0 chr11 53964800 53964858 -94818614 - L1PA7 LINE L1 -6 6148 6091 3330 109 18 6 chr11 53964858 53965371 -94818101 + L1P LINE L1 4845 5363 -783 3407 156 10 45 chr11 53966049 53966533 -94816939 - L1MA4 LINE L1 -1 6299 5848 1832 209 78 10 chr11 53966533 53966930 -94816542 - MSTB LTR MaLR 0 426 3 3407 156 10 45 chr11 53966930 53967175 -94816297 - L1MA4 LINE L1 -452 5848 5596 200 366 41 4 chr11 53969729 53969861 -94813611 - MIR SINE MIR -65 143 21 183 235 153 24 chr11 53970561 53970646 -94812826 + L3 LINE CR1 798 893 -684 212 0 36 0 chr11 53970943 53970971 -94812501 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 308 230 110 20 chr11 53970978 53971078 -94812394 + L3 LINE CR1 1204 1312 -265 197 338 69 31 chr11 53971355 53971515 -94811957 - L2 LINE L2 -553 2761 2596 475 271 58 7 chr11 53971537 53971692 -94811780 + MIR SINE MIR 95 257 -5 3044 187 30 2 chr11 53972502 53973105 -94810367 + Tigger3b DNA MER2_type 1 620 -611 41985 54 9 2 chr11 53973108 53979186 -94804286 + L1PA4 LINE L1 12 6137 -18 2084 150 201 14 chr11 53979186 53979698 -94803774 + Tigger3b DNA MER2_type 576 1183 -49 336 270 95 24 chr11 53979984 53980236 -94803236 + Charlie2a DNA MER1_type 1593 1862 -1000 28 79 0 0 chr11 53980339 53980402 -94803070 + AT_rich Low_complexity Low_complexity 1 63 0 1927 96 4 4 chr11 53980433 53980713 -94802759 - AluYb8 SINE Alu 0 318 39 22 0 0 0 chr11 53980721 53980743 -94802729 + AT_rich Low_complexity Low_complexity 1 22 0 30 0 0 0 chr11 53980841 53980871 -94802601 + AT_rich Low_complexity Low_complexity 1 30 0 536 139 0 0 chr11 53981122 53981201 -94802271 - AluSg/x SINE Alu -96 216 138 386 195 97 72 chr11 53982339 53982534 -94800938 + LTR49-int LTR ERV1 157 356 -5975 441 204 25 27 chr11 53982550 53982748 -94800724 + LTR49-int LTR ERV1 471 701 -5630 418 216 57 67 chr11 53982988 53983005 -94800467 + LTR49-int LTR ERV1 956 972 -5359 357 43 0 0 chr11 53983012 53983059 -94800413 + (TA)n Simple_repeat Simple_repeat 1 47 0 * 396 0 0 0 chr11 53983058 53983102 -94800370 + (GA)n Simple_repeat Simple_repeat 2 45 0 2004 128 0 10 chr11 53983059 53983383 -94800089 - AluSx SINE Alu -32 280 1 418 216 57 67 chr11 53983383 53983559 -94799913 + LTR49-int LTR ERV1 972 1147 -5184 900 121 7 0 chr11 53983690 53983831 -94799641 - L1PA15 LINE L1 -1 6164 6023 328 259 38 46 chr11 53983873 53984004 -94799468 - L1MC5 LINE L1 -280 7681 7552 524 280 29 97 chr11 53984534 53984948 -94798524 - L1MC5 LINE L1 -871 7090 6705 266 262 65 47 chr11 53984972 53985079 -94798393 - L1MC4 LINE L1 -1204 6838 6730 203 125 25 0 chr11 53985651 53985691 -94797781 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 323 190 60 0 chr11 53985913 53986013 -94797459 + (TA)n Simple_repeat Simple_repeat 2 107 0 388 320 103 41 chr11 53987963 53988254 -94795218 + L1ME4a LINE L1 5549 5857 -264 24 67 0 0 chr11 53988299 53988344 -94795128 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr11 53988387 53988409 -94795063 + AT_rich Low_complexity Low_complexity 1 22 0 626 208 66 111 chr11 53988888 53989114 -94794358 + MER20 DNA MER1_type 1 216 -3 228 35 0 0 chr11 53989784 53989813 -94793659 + (TG)n Simple_repeat Simple_repeat 2 30 0 460 281 57 21 chr11 53990217 53990409 -94793063 - MIR SINE MIR 0 262 66 343 304 77 59 chr11 53990670 53991009 -94792463 + Charlie2b DNA MER1_type 110 454 -2328 1464 221 3 3 chr11 53991015 53991313 -94792159 + AluJo SINE Alu 1 298 -14 2029 129 51 28 chr11 53991357 53991713 -94791759 + THE1B LTR MaLR 1 364 0 11148 114 3 1 chr11 53991713 53993290 -94790182 + THE1B-int LTR MaLR 1 1580 0 2073 136 48 17 chr11 53993291 53993643 -94789829 + THE1B LTR MaLR 2 364 0 292 306 27 27 chr11 53993736 53993847 -94789625 + Charlie2b DNA MER1_type 545 655 -2127 336 270 95 24 chr11 53993953 53994205 -94789267 + Charlie2a DNA MER1_type 1593 1862 -1000 31 76 0 0 chr11 53994308 53994374 -94789098 + AT_rich Low_complexity Low_complexity 1 66 0 2588 17 3 0 chr11 53994402 53994694 -94788778 - AluYb8 SINE Alu 0 318 26 185 0 0 39 chr11 53995633 53995659 -94787813 + (GGAAA)n Simple_repeat Simple_repeat 1 25 0 22 56 0 0 chr11 53995947 53995983 -94787489 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr11 53996751 53996775 -94786697 + AT_rich Low_complexity Low_complexity 1 24 0 439 320 59 29 chr11 53997112 53997273 -94786199 + L2 LINE L2 2999 3154 -159 944 189 95 0 chr11 53997273 53997463 -94786009 - MER6B DNA MER2_type -1 209 2 439 320 59 29 chr11 53997463 53997607 -94785865 + L2 LINE L2 3154 3313 0 333 0 0 0 chr11 53997680 53997717 -94785755 + (CA)n Simple_repeat Simple_repeat 1 37 0 578 256 39 108 chr11 53997777 53998164 -94785308 + MER34 LTR ERV1 5 364 -178 608 149 0 9 chr11 53998251 53998358 -94785114 - L1PA13 LINE L1 -14 6149 6044 289 29 0 0 chr11 53998364 53998398 -94785074 - L1PA13 LINE L1 -86 6077 6044 4393 124 15 0 chr11 53998404 53999082 -94784390 - L1PA13 LINE L1 -86 6077 5390 350 226 38 35 chr11 53999543 53999741 -94783731 + LTR49-int LTR ERV1 471 701 -5630 991 230 47 23 chr11 53999845 54000145 -94783327 + LTR49-int LTR ERV1 842 1148 -5183 848 148 7 0 chr11 54000393 54000535 -94782937 - L1PA15 LINE L1 -7 6158 6016 229 248 51 51 chr11 54000577 54000694 -94782778 - L1MC5 LINE L1 -292 7669 7553 261 0 0 0 chr11 54000751 54000780 -94782692 + (TG)n Simple_repeat Simple_repeat 2 30 0 2201 107 7 0 chr11 54000969 54001268 -94782204 + AluSc SINE Alu 1 301 -8 311 308 50 8 chr11 54001547 54001667 -94781805 - L1MC5 LINE L1 -848 7113 6989 481 290 10 49 chr11 54001741 54001991 -94781481 - L1MC5 LINE L1 -1018 7024 6705 249 211 0 0 chr11 54003491 54003548 -94779924 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 733 313 27 8 chr11 54004699 54004958 -94778514 + ERVL LTR ERVL 3531 3794 -1970 416 282 35 7 chr11 54004982 54005124 -94778348 + ERVL LTR ERVL 4621 4766 -998 443 287 100 66 chr11 54005241 54005621 -94777851 + MLT1H LTR MaLR 130 522 -27 340 226 116 26 chr11 54005829 54005984 -94777488 + L1MCa LINE L1 1995 2163 -4263 349 275 223 5 chr11 54006521 54006732 -94776740 - L1M4 LINE L1 -838 5308 5052 486 348 85 0 chr11 54007627 54007897 -94775575 - L2 LINE L2 -8 3305 3013 24 0 0 0 chr11 54008305 54008329 -94775143 + AT_rich Low_complexity Low_complexity 1 24 0 255 61 0 0 chr11 54008881 54008914 -94774558 + (TA)n Simple_repeat Simple_repeat 2 34 0 300 310 276 0 chr11 54008929 54009074 -94774398 + MER5A DNA MER1_type 4 188 -1 839 248 181 37 chr11 54010293 54010701 -94772771 - MLT1C LTR MaLR 0 467 1 281 342 54 27 chr11 54011909 54012093 -94771379 - MIR SINE MIR -21 241 53 2275 197 32 63 chr11 54012127 54012695 -94770777 - MER44D DNA MER2_type 0 605 1 1827 112 0 0 chr11 54012790 54013039 -94770433 - AluSx SINE Alu -15 297 49 26 0 0 0 chr11 54013447 54013473 -94769999 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr11 54013486 54013507 -94769965 + AT_rich Low_complexity Low_complexity 1 21 0 449 321 57 45 chr11 54014074 54014320 -94769152 + MIR SINE MIR 8 256 -6 10120 264 38 11 chr11 54016445 54020006 -94763466 - L1PA15-16 LINE L1 -1095 5754 1934 966 191 40 18 chr11 54020075 54020352 -94763120 + L1MCa LINE L1 3096 3378 -3048 1043 119 20 20 chr11 54020613 54020814 -94762658 - L1MA7 LINE L1 -3 6288 6088 299 106 0 0 chr11 54020814 54020861 -94762611 + MADE1 DNA Mariner 34 80 0 755 231 83 13 chr11 54020916 54021145 -94762327 - L1MA9 LINE L1 -166 6146 5902 644 136 8 25 chr11 54021147 54021265 -94762207 + L1M2 LINE L1 5520 5635 -665 2123 109 7 0 chr11 54021671 54021964 -94761508 - AluSx SINE Alu -11 301 7 2792 111 56 5 chr11 54021995 54022036 -94761436 - MLT2A2 LTR ERVL 0 453 416 333 0 0 0 chr11 54022036 54022073 -94761399 + (TG)n Simple_repeat Simple_repeat 2 38 0 2792 111 56 5 chr11 54022073 54022462 -94761010 - MLT2A2 LTR ERVL -37 416 1 705 256 35 13 chr11 54022847 54023077 -94760395 - L1ME LINE L1 -499 5667 5433 549 55 0 0 chr11 54023078 54023151 -94760321 + (TG)n Simple_repeat Simple_repeat 2 74 0 529 164 125 0 chr11 54023151 54023255 -94760217 - FRAM SINE Alu -29 147 31 1028 273 52 31 chr11 54023255 54023860 -94759612 - L1ME LINE L1 -728 5434 4817 670 232 39 6 chr11 54025487 54025668 -94757804 + MER5A DNA MER1_type 1 187 -2 25 51 0 0 chr11 54026100 54026139 -94757333 + AT_rich Low_complexity Low_complexity 1 39 0 228 196 39 0 chr11 54026182 54026233 -94757239 + (TATATG)n Simple_repeat Simple_repeat 5 57 0 1358 145 60 4 chr11 54026533 54026768 -94756704 - AluJo SINE Alu -3 309 62 655 278 20 32 chr11 54028065 54028317 -94755155 + L1MC3 LINE L1 7208 7456 -329 3127 92 2 2 chr11 54028317 54028764 -94754708 - L1PA7 LINE L1 -1305 4841 4395 6576 82 7 1 chr11 54028765 54030042 -94753430 + L1PA7 LINE L1 4847 6129 -25 283 169 182 0 chr11 54030029 54030106 -94753366 + L1MD3 LINE L1 7755 7845 -150 * 3524 194 32 69 chr11 54030117 54031173 -94752299 - L1MB1 LINE L1 -4 6164 5144 317 278 0 26 chr11 54031161 54031276 -94752196 + L1MC4a LINE L1 7684 7795 -13 * 252 245 29 10 chr11 54032549 54032651 -94750821 + (TA)n Simple_repeat Simple_repeat 2 105 0 404 315 109 4 chr11 54033110 54033377 -94750095 - L1ME LINE L1 -301 5820 5526 447 309 86 20 chr11 54034001 54034305 -94749167 - L1ME3A LINE L1 -8 6162 5839 352 294 95 37 chr11 54034409 54034923 -94748549 + L1M4 LINE L1 3999 4542 -1604 859 108 0 0 chr11 54035025 54035145 -94748327 - L1PA4 LINE L1 -4753 1393 1274 * 31628 46 1 1 chr11 54035140 54039892 -94743580 + L1PA4 LINE L1 1403 6154 -1 3812 178 15 5 chr11 54039999 54041308 -94742164 + L1P5 LINE L1 4472 5789 -365 260 125 0 0 chr11 54041322 54041362 -94742110 + MER4B-int LTR ERV1 1152 1191 -5567 246 182 68 34 chr11 54041363 54041451 -94742021 - L1MC4 LINE L1 -1339 6703 6613 278 154 0 15 chr11 54041455 54041520 -94741952 + (TG)n Simple_repeat Simple_repeat 2 65 0 451 99 50 0 chr11 54041681 54041782 -94741690 + (TA)n Simple_repeat Simple_repeat 1 106 0 185 297 16 0 chr11 54041804 54041868 -94741604 - MIR SINE MIR -61 147 83 802 273 61 35 chr11 54041874 54042269 -94741203 + MLT1C LTR MaLR 6 410 -57 220 259 0 17 chr11 54043822 54043880 -94739592 + GA-rich Low_complexity Low_complexity 2 58 0 328 104 0 0 chr11 54044500 54044548 -94738924 + MADE1 DNA Mariner 33 80 0 462 256 0 0 chr11 54044726 54044812 -94738660 - Tigger3(Golem) DNA MER2_type 0 3029 2944 2223 49 0 52 chr11 54044927 54045233 -94738239 - AluY SINE Alu -21 290 1 26 30 0 0 chr11 54046350 54046383 -94737089 + AT_rich Low_complexity Low_complexity 1 33 0 181 364 119 0 chr11 54047750 54047868 -94735604 + MIR SINE MIR 57 188 -74 246 32 0 0 chr11 54048332 54048363 -94735109 + (TG)n Simple_repeat Simple_repeat 2 32 0 290 188 158 104 chr11 54049401 54049603 -94733869 + MLT1H LTR MaLR 332 544 -11 * 640 248 90 4 chr11 54049581 54049859 -94733613 - Charlie2a DNA MER1_type -968 1894 1593 272 215 0 0 chr11 54050218 54050283 -94733189 + L1MC4 LINE L1 6639 6703 -1339 342 0 0 0 chr11 54050289 54050327 -94733145 + (GA)n Simple_repeat Simple_repeat 2 39 0 1051 250 11 15 chr11 54050329 54050601 -94732871 - AluJb SINE Alu -39 273 3 270 257 123 101 chr11 54050667 54050943 -94732529 - Charlie2 DNA MER1_type -2391 391 110 493 273 106 22 chr11 54051162 54051389 -94732083 + MIR SINE MIR 15 260 -2 405 0 0 0 chr11 54051815 54051860 -94731612 + (CA)n Simple_repeat Simple_repeat 2 46 0 665 186 66 111 chr11 54052527 54052753 -94730719 - MER20 DNA MER1_type -3 216 1 24 53 0 0 chr11 54053302 54053340 -94730132 + AT_rich Low_complexity Low_complexity 1 38 0 22 70 0 0 chr11 54053459 54053502 -94729970 + AT_rich Low_complexity Low_complexity 1 43 0 194 280 54 32 chr11 54055755 54055848 -94727624 + MIR SINE MIR 140 234 -28 330 26 0 0 chr11 54055877 54055916 -94727556 + (CA)n Simple_repeat Simple_repeat 2 40 0 233 301 54 0 chr11 54056357 54056450 -94727022 + MIR SINE MIR 91 188 -74 237 293 133 27 chr11 54057201 54057351 -94726121 - LTR50 LTR ERVL -605 190 25 249 256 58 23 chr11 54059748 54059834 -94723638 - HsTC2 DNA Tc2 -33 1865 1777 1041 193 9 9 chr11 54059884 54060112 -94723360 - L1 LINE L1 -1094 5052 4825 2421 122 30 5 chr11 54060112 54060143 -94723329 + L1PB1 LINE L1 5749 5778 -373 247 64 21 21 chr11 54060143 54060190 -94723282 + (TA)n Simple_repeat Simple_repeat 1 47 0 2421 122 30 5 chr11 54060190 54060550 -94722922 + L1PB1 LINE L1 5778 6151 0 194 354 49 0 chr11 54061005 54061087 -94722385 - L2 LINE L2 -65 3207 3122 3326 93 2 0 chr11 54061273 54061704 -94721768 + LTR3 LTR ERVK 1 432 0 859 191 11 37 chr11 54063900 54064088 -94719384 + MER20 DNA MER1_type 36 218 -1 514 224 98 11 chr11 54064421 54064595 -94718877 + MER53 DNA DNA 1 189 0 269 268 115 64 chr11 54065035 54065192 -94718280 + MIR3 SINE MIR 4 168 -40 1868 144 3 10 chr11 54067018 54067323 -94716149 - AluSx SINE Alu -9 303 1 597 147 0 60 chr11 54067912 54068062 -94715410 - FRAM SINE Alu 0 179 37 305 127 0 55 chr11 54068074 54068129 -94715343 - Alu SINE Alu -249 52 1 180 0 0 0 chr11 54069379 54069399 -94714073 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 7241 40 0 2 chr11 54069411 54070769 -94712703 - L1PA4 LINE L1 0 6155 4795 490 251 137 36 chr11 54070864 54071250 -94712222 - Charlie2 DNA MER1_type -282 2580 2156 835 169 0 0 chr11 54071252 54071400 -94712072 - L1PA16 LINE L1 -2 6164 6017 5137 218 55 8 chr11 54071400 54073240 -94710232 - L1PA16 LINE L1 -353 5813 3890 2121 118 0 3 chr11 54073291 54073588 -94709884 - AluSg SINE Alu -14 296 1 335 210 114 30 chr11 54073616 54073783 -94709689 - Charlie2 DNA MER1_type -838 2024 1844 464 207 117 9 chr11 54073870 54073981 -94709491 + L1MCc LINE L1 1071 1193 -5230 627 283 92 16 chr11 54073990 54074583 -94708889 + L1MCc LINE L1 1264 1902 -4887 257 0 0 29 chr11 54074589 54074623 -94708849 + (CA)n Simple_repeat Simple_repeat 1 33 0 548 259 47 6 chr11 54074685 54074855 -94708617 - MER20 DNA MER1_type -2 217 41 663 262 38 25 chr11 54075012 54075249 -94708223 + L1MCc LINE L1 2280 2519 -4603 313 285 50 75 chr11 54075476 54075888 -94707584 + L1MCc LINE L1 2812 3172 -3769 712 295 121 30 chr11 54076008 54076347 -94707125 + MLT1K LTR MaLR 201 570 -18 21 36 0 0 chr11 54076365 54076393 -94707079 + AT_rich Low_complexity Low_complexity 1 28 0 252 281 0 0 chr11 54076452 54076591 -94706881 + (TA)n Simple_repeat Simple_repeat 1 139 0 197 338 0 26 chr11 54076799 54076876 -94706596 + L2 LINE L2 3234 3308 -5 224 333 72 9 chr11 54077587 54077698 -94705774 - MIR3 SINE MIR -9 199 82 27 0 0 0 chr11 54077835 54077862 -94705610 + AT_rich Low_complexity Low_complexity 1 27 0 25 31 0 0 chr11 54077879 54077911 -94705561 + AT_rich Low_complexity Low_complexity 1 32 0 207 108 27 0 chr11 54078433 54078470 -94705002 + T-rich Low_complexity Low_complexity 1 38 0 336 185 0 0 chr11 54078491 54078556 -94704916 - Alu SINE Alu 0 300 236 25 0 0 0 chr11 54078904 54078929 -94704543 + AT_rich Low_complexity Low_complexity 1 25 0 805 247 18 95 chr11 54078960 54079243 -94704229 - MIR SINE MIR 0 262 2 225 167 21 0 chr11 54080800 54080848 -94702624 + LTR37B LTR ERV1 381 429 -39 23 78 0 0 chr11 54080851 54080902 -94702570 + AT_rich Low_complexity Low_complexity 1 51 0 181 321 125 58 chr11 54080933 54081173 -94702299 + L2 LINE L2 1302 1557 -1757 358 234 113 35 chr11 54081474 54081615 -94701857 - LTR37A LTR ERV1 -222 204 53 234 0 0 0 chr11 54081777 54081803 -94701669 + (CA)n Simple_repeat Simple_repeat 1 26 0 332 244 156 0 chr11 54081913 54082003 -94701469 - MIR SINE MIR -95 167 64 231 261 0 0 chr11 54082228 54082274 -94701198 - MER89 LTR ERV1 -37 522 477 23 0 0 0 chr11 54082417 54082440 -94701032 + AT_rich Low_complexity Low_complexity 1 23 0 1722 204 9 9 chr11 54083859 54084202 -94699270 + MER61A LTR ERV1 1 343 0 1781 180 77 66 chr11 54084202 54084763 -94698709 + MER61A-int LTR ERV1 1 567 -4650 11144 116 19 25 chr11 54084767 54087158 -94696314 + MER61-int LTR ERV1 2085 6431 -987 751 283 146 58 chr11 54087158 54087705 -94695767 + L1MCc LINE L1 832 1426 -4997 249 282 78 35 chr11 54087861 54088003 -94695469 - L1MEd LINE L1 -4788 1596 1449 314 258 70 104 chr11 54088133 54088420 -94695052 - L1MEd LINE L1 -4872 1500 1224 211 196 39 0 chr11 54088526 54088577 -94694895 + (TA)n Simple_repeat Simple_repeat 2 54 0 551 271 0 16 chr11 54088716 54088845 -94694627 + AluJo SINE Alu 124 250 -62 35 0 0 0 chr11 54088845 54088880 -94694592 + AT_rich Low_complexity Low_complexity 1 35 0 225 159 0 0 chr11 54088992 54089036 -94694436 + A-rich Low_complexity Low_complexity 1 44 0 405 207 0 0 chr11 54090356 54090443 -94693029 + T-rich Low_complexity Low_complexity 3 89 0 1359 175 80 0 chr11 54090449 54090700 -94692772 - AluSg SINE Alu -39 271 1 668 54 22 0 chr11 54092903 54092995 -94690477 + (TTTC)n Simple_repeat Simple_repeat 4 97 0 321 120 20 0 chr11 54093002 54093052 -94690420 + CT-rich Low_complexity Low_complexity 1 51 0 1559 165 7 29 chr11 54093052 54093331 -94690141 - AluSx SINE Alu -39 273 1 22 0 0 0 chr11 54094665 54094687 -94688785 + AT_rich Low_complexity Low_complexity 1 22 0 3768 169 34 30 chr11 54096389 54097394 -94686078 - MER52A LTR ERV1 -14 1741 674 827 275 107 25 chr11 54098091 54098321 -94685151 + L1ME3A LINE L1 5803 6069 -101 234 0 0 0 chr11 54098321 54098347 -94685125 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 827 275 107 25 chr11 54098347 54098443 -94685029 + L1ME3A LINE L1 6069 6156 -14 27 73 0 0 chr11 54098596 54098651 -94684821 + AT_rich Low_complexity Low_complexity 1 55 0 2216 62 31 7 chr11 54100379 54100668 -94682804 - AluY SINE Alu -15 296 1 192 97 0 0 chr11 54101892 54101923 -94681549 + (CA)n Simple_repeat Simple_repeat 2 32 0 1149 163 5 35 chr11 54103402 54103604 -94679868 - AluJb SINE Alu -116 196 1 621 201 45 22 chr11 54103886 54104020 -94679452 - AluJo SINE Alu -173 139 3 252 390 119 0 chr11 54104246 54104364 -94679108 + L2 LINE L2 3122 3253 -19 25 0 0 0 chr11 54104375 54104400 -94679072 + AT_rich Low_complexity Low_complexity 1 25 0 195 303 15 15 chr11 54105671 54105737 -94677735 - L2 LINE L2 -66 3247 3182 21 0 0 0 chr11 54105741 54105762 -94677710 + AT_rich Low_complexity Low_complexity 1 21 0 183 268 35 92 chr11 54107365 54107507 -94675965 - MIR SINE MIR -31 231 98 27 0 0 0 chr11 54109353 54109380 -94674092 + AT_rich Low_complexity Low_complexity 1 27 0 350 365 30 0 chr11 54109389 54109556 -94673916 - L1MC/D LINE L1 -2008 5800 5629 181 244 22 0 chr11 54109700 54109745 -94673727 - MIR SINE MIR -62 146 101 21 0 0 0 chr11 54110641 54110662 -94672810 + AT_rich Low_complexity Low_complexity 1 21 0 522 281 128 32 chr11 54112046 54112726 -94670746 - L1ME3A LINE L1 -14 6156 5403 1998 140 0 17 chr11 54112923 54113223 -94670249 + AluSx SINE Alu 18 312 0 323 378 14 42 chr11 54113954 54114171 -94669301 - L3 LINE CR1 -25 1552 1342 688 121 0 57 chr11 54114882 54115022 -94668450 + L1PA13 LINE L1 5931 6062 -101 574 116 4 2 chr11 54115042 54115143 -94668329 + L1PA13 LINE L1 6044 6144 -19 2069 132 0 0 chr11 54115959 54116255 -94667217 + AluSx SINE Alu 17 312 0 21 0 0 0 chr11 54116538 54116559 -94666913 + AT_rich Low_complexity Low_complexity 1 21 0 486 103 0 0 chr11 54118715 54118793 -94664679 + (TTTA)n Simple_repeat Simple_repeat 1 78 0 769 284 80 11 chr11 54120866 54121243 -94662229 + L1MA9 LINE L1 5872 6274 -38 1542 198 3 24 chr11 54121399 54121692 -94661780 + AluJo SINE Alu 1 287 -25 748 171 8 0 chr11 54122275 54122398 -94661074 + AluSq/x SINE Alu 24 147 -165 21 57 0 0 chr11 54122720 54122755 -94660717 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr11 54122847 54122875 -94660597 + AT_rich Low_complexity Low_complexity 1 28 0 531 273 7 0 chr11 54123577 54123720 -94659752 - MER5A DNA MER1_type -40 149 6 2210 79 10 0 chr11 54125169 54125460 -94658012 + AluSp SINE Alu 1 294 -19 215 31 31 0 chr11 54130262 54130294 -94653178 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 7427 37 0 0 chr11 54130914 54131889 -94651583 - L1PA4 LINE L1 -3 6152 5178 8482 29 1 0 chr11 54131889 54132956 -94650516 + L1PA4 LINE L1 4134 5201 -945 1692 185 28 6 chr11 54133990 54134315 -94649157 - MER61A LTR ERV1 -11 332 1 9558 114 25 9 chr11 54134315 54135814 -94647658 - MER61A-int LTR ERV1 0 5217 3696 2982 56 8 8 chr11 54136025 54136417 -94647055 + L1PA7 LINE L1 5760 6151 -3 25 31 0 0 chr11 54136439 54136471 -94647001 + AT_rich Low_complexity Low_complexity 1 32 0 25 31 0 0 chr11 54136531 54136563 -94646909 + AT_rich Low_complexity Low_complexity 1 32 0 431 305 121 19 chr11 54136656 54137293 -94646179 - L1ME3A LINE L1 -176 5994 5293 238 279 178 7 chr11 54137345 54137614 -94645858 - L1ME3A LINE L1 -917 5229 4915 23 0 0 0 chr11 54138705 54138728 -94644744 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr11 54140385 54140406 -94643066 + AT_rich Low_complexity Low_complexity 1 21 0 255 93 0 0 chr11 54140583 54140626 -94642846 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 222 419 22 0 chr11 54142265 54142401 -94641071 + L2 LINE L2 2850 2988 -325 231 251 0 18 chr11 54142406 54142569 -94640903 + (TA)n Simple_repeat Simple_repeat 2 161 0 325 329 58 64 chr11 54142606 54142919 -94640553 + L2 LINE L2 3003 3313 0 900 213 39 13 chr11 54145102 54145332 -94638140 + MLT2B3 LTR ERVL 5 240 -314 298 336 37 0 chr11 54145312 54145446 -94638026 + MLT2B3 LTR ERVL 370 508 -46 * 704 203 203 0 chr11 54145456 54145643 -94637829 - Tigger3(Golem) DNA MER2_type -3 3026 2802 246 62 0 0 chr11 54145644 54145676 -94637796 + (TA)n Simple_repeat Simple_repeat 1 32 0 309 67 22 0 chr11 54145689 54145734 -94637738 + MLT2D LTR ERVL 369 414 0 2002 78 7 0 chr11 54246695 54246965 -94536507 + HERVL LTR ERVL 5262 5533 -121 278 320 120 51 chr11 54247468 54247643 -94535829 - MLT1G LTR MaLR 0 595 409 321 274 96 65 chr11 54247695 54247932 -94535540 - MLT1G LTR MaLR -284 271 1 3340 53 5 2 chr11 54248091 54248503 -94534969 - L1PA7 LINE L1 -206 5948 5536 1548 79 0 23 chr11 54248503 54248717 -94534755 + L1PA7 LINE L1 5944 6153 -1 452 131 0 12 chr11 54249225 54249309 -94534163 + (TCCC)n Simple_repeat Simple_repeat 4 86 0 184 51 26 51 chr11 54250313 54250352 -94533120 + (TTAA)n Simple_repeat Simple_repeat 4 41 0 288 77 0 0 chr11 54250860 54250899 -94532573 + (TG)n Simple_repeat Simple_repeat 2 40 0 22 35 0 0 chr11 54251145 54251174 -94532298 + AT_rich Low_complexity Low_complexity 1 29 0 204 185 12 49 chr11 54252077 54252158 -94531314 + (TTATA)n Simple_repeat Simple_repeat 5 82 0 190 140 53 0 chr11 54252161 54252218 -94531254 + (TATAA)n Simple_repeat Simple_repeat 2 61 0 752 313 116 41 chr11 54253402 54253929 -94529543 + L2 LINE L2 2510 3113 -200 1307 236 117 22 chr11 54253929 54254390 -94529082 + MLT1D LTR MaLR 1 505 0 752 313 116 41 chr11 54254390 54254606 -94528866 + L2 LINE L2 3113 3311 -2 2043 120 0 3 chr11 54254661 54254944 -94528528 + AluSg SINE Alu 5 286 -24 929 110 8 0 chr11 54254956 54255083 -94528389 + AluSq/x SINE Alu 1 128 -185 348 24 0 0 chr11 54255086 54255127 -94528345 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 1975 207 27 88 chr11 54257755 54258413 -94525059 - LTR6A LTR ERV1 0 564 1 245 329 141 7 chr11 54258879 54259028 -94524444 - L2 LINE L2 -300 2972 2804 6622 69 4 22 chr11 54259032 54259326 -94524146 + L1PA7 LINE L1 5022 5320 -834 6498 112 14 10 chr11 54259326 54260288 -94523184 + LTR5 LTR ERVK 5 969 0 6622 69 4 22 chr11 54260288 54260935 -94522537 + L1PA7 LINE L1 5320 5946 -208 2539 97 95 5 chr11 54260935 54261346 -94522126 - LTR7 LTR ERV1 -2 448 1 6622 69 4 22 chr11 54261346 54261552 -94521920 + L1PA7 LINE L1 5946 6154 0 29 47 0 0 chr11 54261635 54261678 -94521794 + AT_rich Low_complexity Low_complexity 1 43 0 21 95 0 0 chr11 54262126 54262189 -94521283 + AT_rich Low_complexity Low_complexity 1 63 0 299 352 31 34 chr11 54262234 54262592 -94520880 + L1ME3 LINE L1 1082 1438 -4946 344 322 85 33 chr11 54262592 54262862 -94520610 + L1ME3 LINE L1 1659 1942 -4621 341 253 193 40 chr11 54262868 54263018 -94520454 + L2 LINE L2 1822 1994 -1320 731 284 111 9 chr11 54263316 54263739 -94519733 + L1ME3 LINE L1 2662 3127 -3255 265 272 144 35 chr11 54263788 54264192 -94519280 + L1ME3 LINE L1 3359 3806 -2576 369 313 171 8 chr11 54264560 54264955 -94518517 + L1ME3 LINE L1 5905 6369 -29 1055 269 55 34 chr11 54265566 54266094 -94517378 + L1ME1 LINE L1 1030 1568 -4974 780 201 29 33 chr11 54266402 54266646 -94516826 + L1ME1 LINE L1 4797 5039 -1605 1171 269 46 38 chr11 54266650 54267152 -94516320 + L1ME1 LINE L1 6134 6639 -25 23 0 0 0 chr11 54267574 54267597 -94515875 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr11 54267614 54267637 -94515835 + AT_rich Low_complexity Low_complexity 1 23 0 2535 218 20 7 chr11 54268407 54268957 -94514515 + MER41D LTR ERV1 1 557 0 1331 194 82 0 chr11 54269022 54269290 -94514182 - AluJo SINE Alu 0 312 23 3282 94 19 10 chr11 54269320 54269799 -94513673 - L1PA8 LINE L1 -2 6170 5688 3839 118 7 0 chr11 54271867 54272433 -94511039 - L1PA15 LINE L1 -3 6162 5593 196 373 100 0 chr11 54273783 54273893 -94509579 - MIR3 SINE MIR -13 195 75 27 0 0 0 chr11 54274038 54274065 -94509407 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chr11 54274698 54274723 -94508749 + AT_rich Low_complexity Low_complexity 1 25 0 2004 135 6 6 chr11 54275870 54276182 -94507290 - AluSx SINE Alu 0 312 1 22 0 0 0 chr11 54276225 54276247 -94507225 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 54276371 54276392 -94507080 + AT_rich Low_complexity Low_complexity 1 21 0 21599 148 11 8 chr11 54276629 54281250 -94502222 - L1PA10 LINE L1 -4 6164 1531 183 156 0 0 chr11 54281400 54281432 -94502040 + (CA)n Simple_repeat Simple_repeat 1 32 0 21 36 0 0 chr11 54281647 54281675 -94501797 + AT_rich Low_complexity Low_complexity 1 28 0 988 199 5 0 chr11 54282741 54282932 -94500540 - L1PB4 LINE L1 0 6156 5965 246 254 0 0 chr11 54283887 54283946 -94499526 + (TA)n Simple_repeat Simple_repeat 2 60 0 220 267 0 0 chr11 54285555 54285600 -94497872 + (CA)n Simple_repeat Simple_repeat 2 46 0 267 93 0 0 chr11 54286220 54286263 -94497209 + (CA)n Simple_repeat Simple_repeat 2 44 0 204 345 58 0 chr11 54288558 54288645 -94494827 + L3 LINE CR1 1223 1314 -263 1921 127 3 52 chr11 54289442 54289766 -94493706 - AluSc SINE Alu -1 308 1 2341 262 77 42 chr11 54290220 54291251 -94492221 + L1MC4a LINE L1 6689 7755 -53 206 339 0 0 chr11 54291542 54291598 -94491874 + L2 LINE L2 3217 3272 0 1131 204 88 31 chr11 54291696 54292015 -94491457 - MER44D DNA MER2_type -2 607 1 1617 121 29 4 chr11 54292189 54292462 -94491010 + L1MA5A LINE L1 6014 6293 -4 21 0 0 0 chr11 54293451 54293472 -94490000 + AT_rich Low_complexity Low_complexity 1 21 0 31 58 0 0 chr11 54294019 54294071 -94489401 + AT_rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr11 54294783 54294805 -94488667 + AT_rich Low_complexity Low_complexity 1 22 0 268 159 0 0 chr11 54296213 54296257 -94487215 - L1MA2 LINE L1 -385 5919 5876 957 115 0 19 chr11 54296258 54296275 -94487197 + L1MA1 LINE L1 6150 6166 -136 349 145 12 48 chr11 54296275 54296358 -94487114 - MADE1 DNA Mariner 0 80 1 957 115 0 19 chr11 54296358 54296496 -94486976 + L1MA1 LINE L1 6166 6302 0 1541 189 132 75 chr11 54297830 54298023 -94485449 + LTR48 LTR ERV1 2 183 -604 599 26 0 0 chr11 54298023 54298100 -94485372 + L1PA3 LINE L1 6079 6155 0 1541 189 132 75 chr11 54298100 54298415 -94485057 + LTR48 LTR ERV1 183 539 -248 397 134 12 37 chr11 54298459 54298541 -94484931 + MADE1 DNA Mariner 1 80 0 286 163 0 0 chr11 54298554 54298603 -94484869 + L1MA2 LINE L1 5871 5919 -385 503 186 110 41 chr11 54299051 54299196 -94484276 + LTR48 LTR ERV1 633 787 0 254 318 58 75 chr11 54300661 54301020 -94482452 + L2 LINE L2 2848 3200 -113 1813 155 4 7 chr11 54301193 54301471 -94482001 + AluSx SINE Alu 1 277 -35 34 24 0 0 chr11 54301471 54301512 -94481960 + AT_rich Low_complexity Low_complexity 1 41 0 1637 157 7 4 chr11 54302013 54302293 -94481179 + AluJo SINE Alu 18 298 -14 7286 35 5 1 chr11 54302807 54304180 -94479292 + L1PA5 LINE L1 4792 6167 0 22 0 0 0 chr11 54304829 54304851 -94478621 + AT_rich Low_complexity Low_complexity 1 22 0 73 70 0 0 chr11 54304948 54305091 -94478381 + AT_rich Low_complexity Low_complexity 1 143 0 23 0 0 0 chr11 54305523 54305546 -94477926 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr11 54305983 54306004 -94477468 + AT_rich Low_complexity Low_complexity 1 21 0 409 348 39 13 chr11 54306107 54306340 -94477132 + MIR SINE MIR 8 246 -16 1025 122 0 0 chr11 54306504 54306660 -94476812 - AluSg/x SINE Alu -3 309 154 277 323 41 46 chr11 54308053 54308248 -94475224 + MIR SINE MIR 5 198 -64 227 235 15 15 chr11 54308527 54308595 -94474877 + MER41A LTR ERV1 400 467 -87 26 0 0 0 chr11 54309920 54309946 -94473526 + AT_rich Low_complexity Low_complexity 1 26 0 270 194 15 30 chr11 54310184 54310251 -94473221 - MIR SINE MIR 0 262 197 641 345 91 26 chr11 54310325 54311090 -94472382 + L2 LINE L2 2410 3223 -90 915 250 45 7 chr11 54311173 54311461 -94472011 - L1MCc LINE L1 -6106 317 19 255 170 0 0 chr11 54311635 54311682 -94471790 + T-rich Low_complexity Low_complexity 1 47 0 1696 212 43 46 chr11 54311993 54312408 -94471064 - MER39 LTR ERV1 -293 414 1 252 293 32 80 chr11 54312624 54312812 -94470660 - L2 LINE L2 -3 3310 3132 1676 212 3 6 chr11 54313922 54314243 -94469229 + L1 LINE L1 316 635 -6930 377 229 27 101 chr11 54314279 54314407 -94469065 + L1 LINE L1 4438 4574 -2991 2121 63 37 0 chr11 54314407 54314677 -94468795 + AluY SINE Alu 1 280 -31 377 229 27 101 chr11 54314677 54314738 -94468734 + L1 LINE L1 4574 4606 -2959 2319 113 16 8 chr11 54314738 54315101 -94468371 + L1PA13 LINE L1 5798 6163 0 377 229 27 101 chr11 54315101 54315168 -94468304 + L1 LINE L1 4606 4676 -2889 * 5733 175 20 2 chr11 54315161 54316404 -94467068 + L1PA13 LINE L1 4216 5476 -685 1667 70 0 0 chr11 54316415 54316630 -94466842 - L1PA13 LINE L1 -20 6143 5929 386 169 0 0 chr11 54316632 54316697 -94466775 + L1PA13 LINE L1 5870 5934 -229 * 3964 167 22 13 chr11 54316664 54317375 -94466097 + L1PA15 LINE L1 5440 6157 -8 390 289 72 22 chr11 54317377 54317557 -94465915 + L1M4 LINE L1 2434 2622 -3524 585 284 18 36 chr11 54317632 54317854 -94465618 - MER20 DNA MER1_type -1 218 1 22 94 0 0 chr11 54318714 54318778 -94464694 + AT_rich Low_complexity Low_complexity 1 64 0 186 338 0 13 chr11 54318937 54319014 -94464458 + L2 LINE L2 2937 3012 -301 2123 123 0 0 chr11 54319046 54319348 -94464124 - AluY SINE Alu -9 302 1 412 295 44 82 chr11 54319389 54319755 -94463717 + L2 LINE L2 2849 3200 -113 52 47 0 28 chr11 54319906 54319923 -94463549 + AT_rich Low_complexity Low_complexity 1 17 -86 1825 144 4 7 chr11 54319923 54320201 -94463271 + AluSx SINE Alu 1 277 -35 189 0 0 0 chr11 54320201 54320222 -94463250 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 52 47 0 28 chr11 54320222 54320309 -94463163 + AT_rich Low_complexity Low_complexity 15 103 0 1429 171 31 10 chr11 54320741 54321033 -94462439 + AluJo SINE Alu 1 298 -14 34 24 0 0 chr11 54323027 54323068 -94460404 + AT_rich Low_complexity Low_complexity 1 41 0 25 31 0 0 chr11 54323292 54323324 -94460148 + AT_rich Low_complexity Low_complexity 1 32 0 403 346 6 12 chr11 54323498 54323660 -94459812 + MIR SINE MIR 86 246 -16 714 167 5 91 chr11 54323816 54324002 -94459470 - AluSg/x SINE Alu 0 312 143 278 319 47 37 chr11 54325362 54325553 -94457919 + MIR SINE MIR 6 198 -64 362 176 0 0 chr11 54325832 54325900 -94457572 + MER41A LTR ERV1 400 467 -87 24 0 0 0 chr11 54326818 54326842 -94456630 + AT_rich Low_complexity Low_complexity 1 24 0 227 223 54 71 chr11 54327486 54327598 -94455874 - MIR SINE MIR 0 262 153 537 319 73 36 chr11 54327615 54327944 -94455528 + L2 LINE L2 2403 2743 -571 324 282 233 26 chr11 54327981 54328247 -94455225 + L2 LINE L2 2949 3269 -44 259 224 0 0 chr11 54328270 54328319 -94455153 - MIR SINE MIR -121 141 93 24 0 0 0 chr11 54328703 54328727 -94454745 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr11 54328785 54328810 -94454662 + AT_rich Low_complexity Low_complexity 1 25 0 303 292 59 51 chr11 54329121 54329357 -94454115 - L1MCa LINE L1 -2659 4282 4045 355 300 107 33 chr11 54329836 54330136 -94453336 - L1MCa LINE L1 -5037 1904 1583 625 236 69 46 chr11 54330346 54330562 -94452910 - L1MCa LINE L1 -6008 415 195 359 270 52 0 chr11 54330571 54330686 -94452786 - L1MCa LINE L1 -6284 139 19 187 167 0 37 chr11 54330850 54330904 -94452568 + T-rich Low_complexity Low_complexity 2 53 0 257 333 26 26 chr11 54331150 54331264 -94452208 + MIR SINE MIR 28 141 -121 5053 183 32 7 chr11 54331274 54332438 -94451034 + L1PA15 LINE L1 4289 5476 -692 1598 76 22 0 chr11 54332438 54332663 -94450809 - L1PA13 LINE L1 -5 6158 5929 429 117 0 78 chr11 54332663 54332728 -94450744 + L1PA13 LINE L1 5872 5932 -231 3950 162 13 6 chr11 54332728 54333415 -94450057 + L1PA15 LINE L1 5448 6157 -8 311 193 34 23 chr11 54333415 54333444 -94450028 + L1MA4A LINE L1 5936 5963 -339 531 302 14 36 chr11 54333663 54333885 -94449587 - MER20 DNA MER1_type -1 218 2 22 80 0 0 chr11 54333912 54333962 -94449510 + AT_rich Low_complexity Low_complexity 1 50 0 1089 176 37 4 chr11 54335226 54335470 -94448002 - L1 LINE L1 -1493 4653 4402 24 0 0 0 chr11 54335996 54336020 -94447452 + AT_rich Low_complexity Low_complexity 1 24 0 285 29 0 0 chr11 54336064 54336098 -94447374 + (TA)n Simple_repeat Simple_repeat 2 35 0 212 226 12 24 chr11 54337210 54337294 -94446178 + (TTA)n Simple_repeat Simple_repeat 2 84 0 306 349 30 12 chr11 54339862 54340031 -94443441 - L1MEd LINE L1 -4970 1149 978 2028 56 3 88 chr11 54340056 54340375 -94443097 + AluY SINE Alu 4 295 -16 376 333 0 0 chr11 54341391 54341487 -94441985 - L2 LINE L2 -260 3053 2958 2359 68 3 0 chr11 54342343 54342650 -94440822 + AluY SINE Alu 1 308 -3 373 329 68 55 chr11 54342717 54343097 -94440375 - L1MEc LINE L1 -4916 1480 1096 306 113 75 0 chr11 54343337 54343390 -94440082 - L1MA1 LINE L1 -165 6137 6081 710 186 18 91 chr11 54343632 54343853 -94439619 + L1M4c LINE L1 2279 2483 -3901 893 140 22 7 chr11 54345052 54345188 -94438284 + AluSq/x SINE Alu 1 138 -174 7473 56 8 5 chr11 54345187 54346308 -94437164 + SVA Other Other 432 1413 0 430 139 0 42 chr11 54346325 54346397 -94437075 + AluSp SINE Alu 121 189 -114 23 0 0 0 chr11 54346540 54346563 -94436909 + AT_rich Low_complexity Low_complexity 1 23 0 984 308 65 8 chr11 54346857 54347244 -94436228 + MER69 DNA AcHobo 2 410 -2116 2090 123 0 7 chr11 54347268 54347560 -94435912 + AluSq SINE Alu 6 295 -18 42 86 0 0 chr11 54347563 54347668 -94435804 + AT_rich Low_complexity Low_complexity 1 105 0 27 0 0 0 chr11 54347791 54347818 -94435654 + AT_rich Low_complexity Low_complexity 1 27 0 851 162 37 0 chr11 54347917 54348053 -94435419 + FRAM SINE Alu 5 145 -31 302 224 60 0 chr11 54348054 54348170 -94435302 + (TA)n Simple_repeat Simple_repeat 2 124 0 418 202 0 0 chr11 54349083 54349177 -94434295 - L1PB4 LINE L1 0 6156 6063 351 179 0 39 chr11 54349177 54349247 -94434225 - L1MA4 LINE L1 -433 5867 5799 3413 178 11 14 chr11 54349257 54349905 -94433567 - HSMAR2 DNA Mariner -13 1289 644 2949 168 42 37 chr11 54349911 54350011 -94433461 - HSMAR2 DNA Mariner -599 703 605 1949 141 0 32 chr11 54350011 54350323 -94433149 - AluSg SINE Alu -8 302 1 2949 168 42 37 chr11 54350323 54350628 -94432844 - HSMAR2 DNA Mariner -697 605 292 2181 105 7 0 chr11 54350628 54350923 -94432549 + AluSg SINE Alu 6 302 -8 2949 168 42 37 chr11 54350923 54351116 -94432356 - HSMAR2 DNA Mariner -1010 292 101 347 150 0 50 chr11 54351144 54351224 -94432248 - L1M4 LINE L1 -373 5801 5726 302 305 77 15 chr11 54351214 54351473 -94431999 - L1MEc LINE L1 -5353 1043 769 * 629 249 5 49 chr11 54351794 54351999 -94431473 + L1M4c LINE L1 2288 2483 -3901 21 0 0 0 chr11 54352024 54352045 -94431427 + AT_rich Low_complexity Low_complexity 1 21 0 1273 77 0 0 chr11 54352318 54352486 -94430986 + AluY SINE Alu 141 308 -3 344 245 7 91 chr11 54352486 54352629 -94430843 + L1M4c LINE L1 2335 2465 -3919 3266 226 84 20 chr11 54352725 54352869 -94430603 + L1PB1 LINE L1 2 135 -6728 3448 115 84 4 chr11 54352869 54353392 -94430080 - MER61E LTR ERV1 -4 565 1 3266 226 84 20 chr11 54353392 54354075 -94429397 + L1PB1 LINE L1 135 882 -5981 1478 181 10 17 chr11 54354535 54354828 -94428644 + L1PB1 LINE L1 865 1155 -5708 1837 184 53 28 chr11 54354828 54355368 -94428104 + MLT2A2 LTR ERVL 1 554 0 9391 175 42 32 chr11 54355371 54357664 -94425808 + L1PB1 LINE L1 1172 3460 -3402 1783 163 3 7 chr11 54357664 54357947 -94425525 + AluSx SINE Alu 6 287 -25 9391 175 42 32 chr11 54357947 54358315 -94425157 + L1PB1 LINE L1 3460 3823 -3039 3988 217 15 6 chr11 54358342 54359367 -94424105 + L1PB1 LINE L1 4929 5962 -900 3011 98 19 0 chr11 54359387 54359816 -94423656 - LTR3b LTR ERVK 0 437 1 3047 127 17 0 chr11 54359828 54360357 -94423115 + L1PB1 LINE L1 5970 6507 -360 189 0 0 0 chr11 54360364 54360385 -94423087 + (CA)n Simple_repeat Simple_repeat 2 22 0 201 175 0 0 chr11 54360566 54360606 -94422866 + (TA)n Simple_repeat Simple_repeat 1 40 0 2328 136 5 0 chr11 54360606 54360973 -94422499 + L1PB1 LINE L1 6498 6866 -1 24 67 0 0 chr11 54361039 54361084 -94422388 + AT_rich Low_complexity Low_complexity 1 45 0 1810 208 0 0 chr11 54362725 54363037 -94420435 + AluSx SINE Alu 1 312 0 207 0 0 0 chr11 54363210 54363233 -94420239 + (A)n Simple_repeat Simple_repeat 1 23 0 2281 211 49 44 chr11 54363338 54363889 -94419583 + MLT2B3 LTR ERVL 1 554 0 4679 166 40 0 chr11 54363928 54365181 -94418291 - L1PA15 LINE L1 0 6165 4878 6209 259 39 47 chr11 54365181 54366242 -94417230 + HERVL LTR ERVL 26 1094 -4560 378 59 88 0 chr11 54366242 54366310 -94417162 - L1PA3 LINE L1 -2841 3305 3232 16906 34 2 2 chr11 54366310 54369134 -94414338 + L1PA3 LINE L1 3333 6152 -3 6209 259 39 47 chr11 54369134 54370263 -94413209 + HERVL LTR ERVL 1092 2265 -3389 7948 256 14 13 chr11 54370269 54372778 -94410694 - L1PA15 LINE L1 -1673 4473 1962 3166 177 20 15 chr11 54372790 54373957 -94409515 + L1P4 LINE L1 4631 5804 -361 325 100 0 0 chr11 54373962 54374012 -94409460 - L1P4 LINE L1 -340 5821 5772 * 2687 198 15 9 chr11 54374006 54374689 -94408783 + L1MA9 LINE L1 5470 6252 -60 22 80 0 0 chr11 54374719 54374769 -94408703 + AT_rich Low_complexity Low_complexity 1 50 0 300 291 40 40 chr11 54374881 54375029 -94408443 + L1ME1 LINE L1 4806 4953 -1193 225 159 0 0 chr11 54375029 54375073 -94408399 + GA-rich Low_complexity Low_complexity 1 44 0 376 188 62 21 chr11 54375113 54375257 -94408215 + L1ME1 LINE L1 4992 5141 -1005 * 547 243 34 53 chr11 54375252 54375458 -94408014 - L1ME1 LINE L1 -137 6029 5828 1333 259 80 63 chr11 54375650 54376620 -94406852 + L1ME1 LINE L1 5144 6125 -41 5131 26 2 5 chr11 54376635 54377243 -94406229 + L1PA4 LINE L1 5549 6154 -1 2678 108 0 13 chr11 54377698 54378078 -94405394 - THE1C LTR MaLR 0 375 1 233 210 16 0 chr11 54378206 54378268 -94405204 + (CATA)n Simple_repeat Simple_repeat 2 64 0 363 385 26 0 chr11 54378330 54378522 -94404950 + MIR SINE MIR 49 245 -17 24 0 0 0 chr11 54378674 54378698 -94404774 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr11 54379201 54379236 -94404236 + AT_rich Low_complexity Low_complexity 1 35 0 309 100 0 0 chr11 54381458 54381508 -94401964 + (TC)n Simple_repeat Simple_repeat 2 51 0 234 0 0 0 chr11 54381508 54381534 -94401938 + (CA)n Simple_repeat Simple_repeat 1 26 0 38491 35 29 3 chr11 54382601 54388357 -94395115 - L1PA2 LINE L1 0 6155 244 21 0 0 0 chr11 54388467 54388488 -94394984 + AT_rich Low_complexity Low_complexity 1 21 0 194 0 39 0 chr11 54388657 54388683 -94394789 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1937 119 4 4 chr11 54388685 54388963 -94394509 - AluSg1 SINE Alu -31 278 1 252 307 108 38 chr11 54389097 54389309 -94394163 + L3 LINE CR1 625 851 -726 2076 60 18 21 chr11 54389784 54390066 -94393406 - AluY SINE Alu -30 281 1 30 27 0 0 chr11 54390079 54390116 -94393356 + AT_rich Low_complexity Low_complexity 1 37 0 235 195 0 0 chr11 54390783 54390824 -94392648 + MER57A LTR ERV1 296 336 -67 1465 162 24 81 chr11 54390950 54391148 -94392324 - L1MA4 LINE L1 -4 6296 6088 207 0 0 0 chr11 54391148 54391171 -94392301 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1692 59 117 0 chr11 54391171 54391393 -94392079 - AluY SINE Alu -29 282 35 1465 162 24 81 chr11 54391393 54391575 -94391897 - L1MA4 LINE L1 -210 6090 5937 2191 163 107 40 chr11 54391575 54393156 -94390316 - SATR1 Satellite Satellite -144 1686 1 1113 191 239 13 chr11 54393184 54393659 -94389813 - SATR1 Satellite Satellite -1 582 1 1475 124 5 5 chr11 54393660 54393878 -94389594 - AluSq SINE Alu -95 218 1 22 0 0 0 chr11 54394199 54394221 -94389251 + AT_rich Low_complexity Low_complexity 1 22 0 29058 91 11 3 chr11 54395007 54399141 -94384331 - HERVL-A2 LTR ERVL -1486 4168 1 354 148 0 0 chr11 54399141 54399202 -94384270 - MLT2A2 LTR ERVL 0 520 460 222 236 0 0 chr11 54399228 54399283 -94384189 + (TATG)n Simple_repeat Simple_repeat 2 56 0 2683 118 17 0 chr11 54399285 54399691 -94383781 - MLT2A2 LTR ERVL -40 413 1 5581 167 35 2 chr11 54399691 54400758 -94382714 + Tigger1 DNA MER2_type 1052 2153 -265 24942 130 20 76 chr11 54400768 54406095 -94377377 - L1P LINE L1 -1107 5039 12 556 209 17 0 chr11 54406104 54406219 -94377253 + Tigger1 DNA MER2_type 2301 2417 -1 188 261 0 29 chr11 54406268 54406337 -94377135 - MIR SINE MIR -56 206 140 234 128 0 0 chr11 54406980 54407019 -94376453 + (TCCA)n Simple_repeat Simple_repeat 4 42 0 679 55 248 0 chr11 54407025 54407134 -94376338 + MER85 DNA T2_type 4 139 0 345 273 27 18 chr11 54409016 54409126 -94374346 + MIR SINE MIR 7 117 -145 32 0 0 0 chr11 54409217 54409249 -94374223 + AT_rich Low_complexity Low_complexity 1 32 0 189 0 0 0 chr11 54409376 54409397 -94374075 + (TG)n Simple_repeat Simple_repeat 1 21 0 22 70 0 0 chr11 54410606 54410649 -94372823 + AT_rich Low_complexity Low_complexity 1 43 0 194 133 0 22 chr11 54410718 54410763 -94372709 + (TTA)n Simple_repeat Simple_repeat 2 45 0 227 122 20 0 chr11 54411069 54411118 -94372354 + (CA)n Simple_repeat Simple_repeat 1 50 0 261 294 106 10 chr11 54411769 54411924 -94371548 + MIR SINE MIR 23 196 -66 287 347 65 29 chr11 54412675 54412845 -94370627 - ERVL LTR ERVL -3191 2573 2398 1846 250 84 26 chr11 54412893 54413354 -94370118 + MER77 LTR ERV1 1 503 -102 2061 205 59 28 chr11 54413354 54413812 -94369660 - MER70A LTR ERVL 0 472 1 1846 250 84 26 chr11 54413812 54413922 -94369550 + MER77 LTR ERV1 503 605 0 27 87 0 0 chr11 54413975 54414044 -94369428 + AT_rich Low_complexity Low_complexity 1 69 0 2085 117 0 10 chr11 54414242 54414540 -94368932 - AluSc SINE Alu -14 295 1 3110 65 0 0 chr11 54415000 54415401 -94368071 - L1PA5 LINE L1 -1 6153 5753 319 270 168 31 chr11 54415656 54416038 -94367434 - L1M4 LINE L1 -1300 4846 4413 2389 71 7 0 chr11 54416211 54416508 -94366964 - AluY SINE Alu -12 299 1 187 167 143 0 chr11 54417615 54417657 -94365815 - L2 LINE L2 -5 3308 3261 22 0 0 0 chr11 54417742 54417764 -94365708 + AT_rich Low_complexity Low_complexity 1 22 0 247 186 51 0 chr11 54417987 54418046 -94365426 + CT-rich Low_complexity Low_complexity 6 67 0 * 255 133 0 22 chr11 54418002 54418047 -94365425 + (TCC)n Simple_repeat Simple_repeat 2 45 0 900 135 6 11 chr11 54418047 54418225 -94365247 + (TTC)n Simple_repeat Simple_repeat 2 178 0 26 50 0 0 chr11 54419708 54419748 -94363724 + AT_rich Low_complexity Low_complexity 1 40 0 186 43 0 0 chr11 54420881 54420904 -94362568 + (GA)n Simple_repeat Simple_repeat 1 23 0 296 122 11 6 chr11 54420923 54421016 -94362456 + LTR54B LTR ERV1 1 146 -352 903 170 19 38 chr11 54421070 54421094 -94362378 + LTR54 LTR ERV1 303 326 -184 2076 116 3 3 chr11 54421094 54421396 -94362076 - AluSg SINE Alu -8 302 1 903 170 19 38 chr11 54421396 54421583 -94361889 + LTR54 LTR ERV1 326 510 0 1641 161 0 18 chr11 54421750 54422030 -94361442 - AluSx SINE Alu -37 275 1 22 56 0 0 chr11 54422221 54422257 -94361215 + AT_rich Low_complexity Low_complexity 1 36 0 1530 236 64 3 chr11 54424580 54424924 -94358548 + MLT1A1 LTR MaLR 1 365 0 22 56 0 0 chr11 54425508 54425544 -94357928 + AT_rich Low_complexity Low_complexity 1 36 0 182 296 32 64 chr11 54425871 54425996 -94357476 + L3 LINE CR1 637 757 -820 184 349 71 42 chr11 54426196 54426408 -94357064 + L3 LINE CR1 1016 1233 -344 9134 93 7 24 chr11 54426818 54428095 -94355377 + HERVL LTR ERVL 4238 5493 -161 2145 101 0 14 chr11 54529217 54529514 -94253958 + AluSx SINE Alu 1 293 -19 491 208 54 13 chr11 54529785 54529934 -94253538 + L1MC1 LINE L1 5185 5339 -807 621 152 225 0 chr11 54529950 54530088 -94253384 + AluSg/x SINE Alu 126 294 -15 2757 154 62 20 chr11 54530089 54530640 -94252832 + L1MC1 LINE L1 5313 5886 -447 1361 251 52 0 chr11 54530639 54531025 -94252447 + L1ME1 LINE L1 5739 6144 -22 * 459 172 17 17 chr11 54532188 54532304 -94251168 + CT-rich Low_complexity Low_complexity 4 119 0 2697 227 37 26 chr11 54532313 54533905 -94249567 - L1PB4 LINE L1 -24 6132 4535 2565 109 2 39 chr11 54533905 54534319 -94249153 - L1PA11 LINE L1 0 6174 5776 971 0 18 0 chr11 54534319 54534433 -94249039 + (TTTC)n Simple_repeat Simple_repeat 1 116 0 1322 190 28 2 chr11 54534571 54534916 -94248556 + MER44D DNA MER2_type 42 524 -81 1009 192 14 19 chr11 54534916 54535130 -94248342 - Tigger1 DNA MER2_type 0 2418 2206 1242 193 41 25 chr11 54535132 54535376 -94248096 + L1M2c LINE L1 71 318 -6531 1329 197 0 44 chr11 54535385 54535659 -94247813 - AluJo SINE Alu -21 291 30 987 194 15 20 chr11 54535714 54535910 -94247562 + L1M2c LINE L1 334 528 -6321 * 2546 249 58 24 chr11 54535905 54536561 -94246911 + L1M2c LINE L1 416 1093 -5756 2845 217 8 27 chr11 54536569 54537086 -94246386 + L1M2c LINE L1 2092 2592 -4257 2347 63 21 0 chr11 54537086 54537373 -94246099 + AluSc SINE Alu 2 294 -15 2845 217 8 27 chr11 54537373 54537591 -94245881 + L1M2c LINE L1 2592 2813 -4036 11412 154 24 48 chr11 54537593 54537781 -94245691 - Tigger1 DNA MER2_type -284 2134 1943 2173 121 3 0 chr11 54537781 54538079 -94245393 + AluY SINE Alu 1 299 -12 11412 154 24 48 chr11 54538079 54538126 -94245346 - Tigger1 DNA MER2_type -475 1943 1896 2172 147 46 0 chr11 54538126 54538474 -94244998 + THE1B LTR MaLR 1 364 0 11412 154 24 48 chr11 54538474 54538939 -94244533 - Tigger1 DNA MER2_type -522 1896 1421 2035 142 0 0 chr11 54538939 54539227 -94244245 + AluSg SINE Alu 1 288 -22 11412 154 24 48 chr11 54539227 54539250 -94244222 - Tigger1 DNA MER2_type -997 1421 1399 1802 147 6 38 chr11 54539250 54539563 -94243909 + AluSx SINE Alu 1 303 -9 11412 154 24 48 chr11 54539563 54540157 -94243315 - Tigger1 DNA MER2_type -1019 1399 792 2177 101 13 13 chr11 54540157 54540463 -94243009 - AluSc SINE Alu -3 306 1 11412 154 24 48 chr11 54540463 54541328 -94242144 - Tigger1 DNA MER2_type -1626 792 1 2287 67 0 0 chr11 54541347 54541658 -94241814 - AluY SINE Alu 0 311 1 420 206 0 0 chr11 54541667 54541735 -94241737 + MER44D DNA MER2_type 541 608 -1 344 269 0 6 chr11 54541740 54541900 -94241572 + (TA)n Simple_repeat Simple_repeat 1 159 0 25 0 0 0 chr11 54542104 54542129 -94241343 + AT_rich Low_complexity Low_complexity 1 25 0 852 261 26 42 chr11 54542383 54542689 -94240783 - L1M4 LINE L1 -1282 4864 4564 180 0 0 0 chr11 54543344 54543364 -94240108 + (T)n Simple_repeat Simple_repeat 1 20 0 3829 154 9 9 chr11 54543716 54544514 -94238958 - L1PA15 LINE L1 -259 6557 5762 10270 249 35 22 chr11 54544531 54545261 -94238211 - L1PA15 LINE L1 -1786 5011 4292 186 43 0 0 chr11 54545261 54545284 -94238188 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 10270 249 35 22 chr11 54545284 54547789 -94235683 - L1PA15 LINE L1 -2505 4292 1488 1860 163 7 0 chr11 54547789 54548084 -94235388 - AluSq SINE Alu -16 297 1 10270 249 35 22 chr11 54548084 54549590 -94233882 - L1PA15 LINE L1 -5309 1488 3 525 295 30 11 chr11 54549752 54550023 -94233449 - L1M4b LINE L1 -4962 1893 1618 407 149 43 29 chr11 54550098 54550200 -94233272 + MSTC LTR MaLR 343 428 0 317 175 16 0 chr11 54550206 54550269 -94233203 - L1M4 LINE L1 -5787 755 692 431 261 65 68 chr11 54550417 54550742 -94232730 - L1M4b LINE L1 -5257 1602 1279 405 164 0 0 chr11 54551381 54551454 -94232018 + Alu SINE Alu 237 309 -3 813 219 93 59 chr11 54551537 54552057 -94231415 + MER65A-int LTR ERV1 1720 2433 -4325 270 258 70 9 chr11 54553138 54553277 -94230195 + MER65A-int LTR ERV1 2927 3014 -1922 1592 196 95 96 chr11 54553302 54553379 -94230093 + MER65A-int LTR ERV1 4288 4364 -2233 2455 69 0 0 chr11 54553379 54553682 -94229790 - AluY SINE Alu -8 303 1 1592 196 95 96 chr11 54553682 54554513 -94228959 + MER65A-int LTR ERV1 4364 5700 -897 1508 288 45 0 chr11 54554601 54554983 -94228489 + MER65A-int LTR ERV1 3606 4004 -867 1559 270 30 19 chr11 54555021 54555491 -94227981 + MER65A-int LTR ERV1 4397 4871 0 2116 136 58 67 chr11 54555491 54555940 -94227532 + MER65A LTR ERV1 1 445 0 1743 229 70 7 chr11 54556264 54556692 -94226780 + MLT1D LTR MaLR 51 505 0 24 0 0 0 chr11 54557318 54557342 -94226130 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr11 54557610 54557632 -94225840 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr11 54557880 54557910 -94225562 + AT_rich Low_complexity Low_complexity 1 30 0 2367 48 34 3 chr11 54559246 54559538 -94223934 + AluY SINE Alu 1 301 -10 199 247 31 93 chr11 54559885 54559982 -94223490 + L2 LINE L2 633 723 -2591 23 0 0 0 chr11 54561668 54561691 -94221781 + AT_rich Low_complexity Low_complexity 1 23 0 982 147 0 19 chr11 54563392 54563549 -94219923 - L1PA12 LINE L1 -306 5862 5709 5991 154 9 15 chr11 54563694 54565343 -94218129 + L1PB2 LINE L1 4511 6149 -2 247 214 18 0 chr11 54565411 54565467 -94218005 - MIR SINE MIR -121 141 85 1084 182 55 12 chr11 54565573 54565826 -94217646 - L1MB1 LINE L1 -6 6162 5899 902 190 104 0 chr11 54565828 54566039 -94217433 - L1MB1 LINE L1 -299 5869 5637 301 136 0 173 chr11 54566047 54566128 -94217344 - LTR8A LTR ERV1 0 727 661 416 182 0 0 chr11 54566129 54566206 -94217266 + L1PB1 LINE L1 5890 5966 -185 2926 172 36 32 chr11 54566212 54566827 -94216645 - LTR8A LTR ERV1 -77 650 34 1031 198 55 0 chr11 54566842 54567044 -94216428 - L1MB1 LINE L1 -536 5632 5420 1364 208 57 21 chr11 54567048 54567849 -94215623 + L1MB1 LINE L1 4547 5427 -741 243 251 41 99 chr11 54568629 54568800 -94214672 + L3b LINE CR1 1272 1432 -151 24 32 0 0 chr11 54569378 54569409 -94214063 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr11 54569613 54569637 -94213835 + AT_rich Low_complexity Low_complexity 1 24 0 1283 146 104 4 chr11 54570956 54571196 -94212276 + MER21A LTR ERV1 1 264 -667 2818 186 51 9 chr11 54571202 54571734 -94211738 + MER21A LTR ERV1 377 930 -1 210 133 0 89 chr11 54571865 54571910 -94211562 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 210 175 25 0 chr11 54572254 54572294 -94211178 + (TG)n Simple_repeat Simple_repeat 2 42 0 1106 210 72 10 chr11 54572818 54573109 -94210363 - L1MB5 LINE L1 -8 6166 5858 2425 53 0 10 chr11 54573159 54573508 -94209964 - AluY SINE Alu 0 311 1 3835 191 42 38 chr11 54573529 54574915 -94208557 - L1MB1 LINE L1 -1 6167 4762 737 220 0 50 chr11 54575015 54575174 -94208298 - AluJo SINE Alu -150 162 12 1478 227 30 8 chr11 54575182 54575547 -94207925 - L1MB1 LINE L1 -1370 4776 4404 1953 199 60 50 chr11 54575574 54576446 -94207026 - L1MB5 LINE L1 -367 5807 4922 919 223 8 29 chr11 54577043 54577281 -94206191 + L1MB1 LINE L1 5841 6073 -95 42293 51 3 4 chr11 54577342 54583503 -94199969 - L1PA4 LINE L1 -3 6152 1 2775 111 26 5 chr11 54583563 54583987 -94199485 - L1PA7 LINE L1 -3223 2923 2491 * 13529 93 6 3 chr11 54583960 54585901 -94197571 + L1PA7 LINE L1 2920 4866 -1280 5343 94 17 11 chr11 54585904 54586684 -94196788 + L1PA7 LINE L1 5254 6037 -117 24 0 0 0 chr11 54586848 54586872 -94196600 + AT_rich Low_complexity Low_complexity 1 24 0 479 238 6 0 chr11 54586893 54587065 -94196407 + (TA)n Simple_repeat Simple_repeat 2 174 0 312 229 0 0 chr11 54587732 54587815 -94195657 + GA-rich Low_complexity Low_complexity 2 84 0 189 0 0 0 chr11 54587963 54587984 -94195488 + (TA)n Simple_repeat Simple_repeat 2 22 0 1048 275 95 98 chr11 54588226 54589187 -94194285 + L1MB7 LINE L1 222 1179 -5363 1656 258 67 41 chr11 54589194 54589823 -94193649 + L1MB7 LINE L1 1509 2153 -4493 21 71 0 0 chr11 54589823 54589865 -94193607 + AT_rich Low_complexity Low_complexity 1 42 0 267 75 25 0 chr11 54590060 54590100 -94193372 + L1MA6 LINE L1 6069 6109 -191 4541 143 42 11 chr11 54590103 54590938 -94192534 + Tigger3(Golem) DNA MER2_type 2168 3028 -1 1449 235 72 47 chr11 54590938 54591410 -94192062 + MER76 LTR ERV 205 688 0 670 203 57 61 chr11 54591412 54591658 -94191814 + L1M4 LINE L1 5088 5332 -814 * 2542 223 86 25 chr11 54591656 54594143 -94189329 + L1MB7 LINE L1 5003 6789 0 1194 265 108 68 chr11 54596554 54596961 -94186511 - L1ME3A LINE L1 -1 6169 5780 180 0 0 0 chr11 54596961 54596981 -94186491 + (TA)n Simple_repeat Simple_repeat 1 20 0 1194 265 108 68 chr11 54596981 54597859 -94185613 - L1ME3A LINE L1 -390 5780 4835 5057 224 64 57 chr11 54597933 54598326 -94185146 + MER65-int LTR ERV1 254 643 -4228 6810 63 0 3 chr11 54598326 54599403 -94184069 - L1PA5 LINE L1 -8 6146 5063 5057 224 64 57 chr11 54599403 54600798 -94182674 + MER65-int LTR ERV1 643 2055 -2816 198 0 0 0 chr11 54600902 54600924 -94182548 + (TCCC)n Simple_repeat Simple_repeat 1 22 0 488 136 11 0 chr11 54600926 54601014 -94182458 + CT-rich Low_complexity Low_complexity 2 90 0 342 67 0 0 chr11 54601060 54601105 -94182367 + (TCCC)n Simple_repeat Simple_repeat 3 47 0 1166 45 17 28 chr11 54601105 54601284 -94182188 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 405 102 0 0 chr11 54601349 54601408 -94182064 + (TCCC)n Simple_repeat Simple_repeat 1 59 0 1408 28 6 6 chr11 54601408 54601586 -94181886 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1882 141 20 3 chr11 54601588 54601886 -94181586 - AluSx SINE Alu -9 303 1 3036 133 39 0 chr11 54601886 54602406 -94181066 - L1P LINE L1 -814 5332 4793 2110 251 36 23 chr11 54602422 54603376 -94180096 + L1M2 LINE L1 2208 3173 -3675 1359 213 28 0 chr11 54603743 54604034 -94179438 + AluJb SINE Alu 1 299 -13 21 36 0 0 chr11 54604669 54604697 -94178775 + AT_rich Low_complexity Low_complexity 1 28 0 33 43 0 0 chr11 54605551 54605598 -94177874 + AT_rich Low_complexity Low_complexity 1 47 0 513 284 77 50 chr11 54605896 54606157 -94177315 + MLT2C2 LTR ERVL 114 381 -83 265 271 0 0 chr11 54606160 54606219 -94177253 + HERVL-C2 LTR ERVL 60 118 -5536 1203 208 25 17 chr11 54606219 54606460 -94177012 + AluJb SINE Alu 1 243 -69 1752 264 20 5 chr11 54606461 54606900 -94176572 + HERVL-C2 LTR ERVL 924 1369 -4395 2964 158 16 6 chr11 54606907 54607758 -94175714 - L1P5 LINE L1 -551 5603 4746 460 167 39 0 chr11 54607755 54607857 -94175615 - L1 LINE L1 -1295 4851 4746 * 1140 171 25 85 chr11 54607854 54608170 -94175302 - L1 LINE L1 -1295 4851 4555 6799 204 95 26 chr11 54608187 54609761 -94173711 + MER52A LTR ERV1 3 1755 0 258 186 0 0 chr11 54609761 54609804 -94173668 - L1P5 LINE L1 -1585 4561 4519 * 585 234 15 14 chr11 54609782 54609938 -94173534 + MSTD-int LTR MaLR 1213 1735 0 895 201 62 49 chr11 54609941 54610281 -94173191 + MSTD LTR MaLR 4 391 -5 1146 235 0 15 chr11 54610284 54610556 -94172916 + ERVL-C2 LTR ERVL 5493 5760 -4 1194 253 28 53 chr11 54610558 54611029 -94172443 + MLT2C2 LTR ERVL 6 464 0 562 308 58 41 chr11 54611031 54611466 -94172006 - L1MCa LINE L1 -5036 1905 1464 983 259 55 60 chr11 54611551 54611699 -94171773 - L1MCa LINE L1 -6004 419 272 3961 63 2 2 chr11 54611699 54612205 -94171267 - L1PA7 LINE L1 -15 6139 5634 983 259 55 60 chr11 54612205 54612458 -94171014 - L1MCa LINE L1 -6151 272 20 220 297 22 11 chr11 54612658 54612749 -94170723 + CT-rich Low_complexity Low_complexity 2 93 0 23 0 0 0 chr11 54612843 54612866 -94170606 + AT_rich Low_complexity Low_complexity 1 23 0 2813 195 61 12 chr11 54612866 54613227 -94170245 - L1MA6 LINE L1 -4 6296 5910 234 0 0 0 chr11 54613227 54613253 -94170219 + (TTA)n Simple_repeat Simple_repeat 2 27 0 476 304 105 3 chr11 54613253 54613377 -94170095 - L1PA2 LINE L1 -225 5930 5820 273 29 0 0 chr11 54613377 54613411 -94170061 + (TG)n Simple_repeat Simple_repeat 1 34 0 476 304 105 3 chr11 54613411 54613572 -94169900 - L1PA2 LINE L1 -335 5820 5616 657 295 79 12 chr11 54613732 54613973 -94169499 + MIR SINE MIR 4 260 -2 223 360 18 26 chr11 54614004 54614118 -94169354 - L2 LINE L2 -4 3309 3197 24 32 0 0 chr11 54615777 54615808 -94167664 + AT_rich Low_complexity Low_complexity 1 31 0 207 0 0 0 chr11 54617820 54617843 -94165629 + (TTTTA)n Simple_repeat Simple_repeat 5 27 0 22 0 0 0 chr11 54618081 54618103 -94165369 + AT_rich Low_complexity Low_complexity 1 22 0 186 133 0 0 chr11 54618820 54618850 -94164622 + (TC)n Simple_repeat Simple_repeat 2 31 0 26 0 0 0 chr11 54619293 54619319 -94164153 + AT_rich Low_complexity Low_complexity 1 26 0 30 0 0 0 chr11 54619346 54619376 -94164096 + AT_rich Low_complexity Low_complexity 1 30 0 939 153 13 0 chr11 54619485 54619642 -94163830 + L1PA15 LINE L1 5999 6157 -8 2101 99 0 3 chr11 54619653 54619946 -94163526 + AluSc SINE Alu 1 292 -17 478 335 43 5 chr11 54620063 54620272 -94163200 - MIR SINE MIR -11 251 35 2603 245 67 46 chr11 54620421 54621444 -94162028 + L1MC4a LINE L1 6689 7732 -76 204 367 13 0 chr11 54621710 54621789 -94161683 + L2 LINE L2 3234 3313 0 1018 217 96 19 chr11 54621884 54622197 -94161275 - MER44D DNA MER2_type -2 607 1 1473 153 37 0 chr11 54622385 54622653 -94160819 + L1MA5A LINE L1 6014 6291 -6 22 0 0 0 chr11 54622783 54622805 -94160667 + AT_rich Low_complexity Low_complexity 1 22 0 333 117 3 0 chr11 54626212 54626261 -94157211 - L1MA2 LINE L1 -268 5912 5865 903 121 6 25 chr11 54626261 54626274 -94157198 + L1MA1 LINE L1 6149 6161 -141 403 137 96 0 chr11 54626274 54626311 -94157161 + MADE1 DNA Mariner 1 33 -47 191 35 0 35 chr11 54626311 54626340 -94157132 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 403 137 96 0 chr11 54626340 54626375 -94157097 + MADE1 DNA Mariner 33 80 0 903 121 6 25 chr11 54626375 54626513 -94156959 + L1MA1 LINE L1 6161 6302 0 333 117 3 0 chr11 54626513 54626524 -94156948 - L1MA2 LINE L1 -315 5865 5857 1218 177 5 9 chr11 54627201 54627421 -94156051 + AluSg/x SINE Alu 84 302 -10 37 62 0 0 chr11 54627443 54627508 -94155964 + AT_rich Low_complexity Low_complexity 1 65 0 1708 168 26 0 chr11 54627970 54628273 -94155199 + AluJo SINE Alu 1 311 -1 300 219 172 57 chr11 54629332 54629488 -94153984 + L1ME4a LINE L1 5897 6080 -41 2437 71 0 0 chr11 54629488 54629798 -94153674 - AluY SINE Alu -1 310 1 300 219 172 57 chr11 54629798 54629833 -94153639 + L1ME4a LINE L1 6080 6110 -11 476 366 37 0 chr11 54630933 54631179 -94152293 + MIR SINE MIR 8 262 0 1919 121 11 4 chr11 54632527 54632842 -94150630 + AluSq SINE Alu 1 317 0 28 95 0 0 chr11 54633422 54633506 -94149966 + AT_rich Low_complexity Low_complexity 1 84 0 354 188 0 0 chr11 54633538 54633607 -94149865 + MER41A LTR ERV1 400 468 -86 22 0 0 0 chr11 54635201 54635223 -94148249 + AT_rich Low_complexity Low_complexity 1 22 0 429 146 49 0 chr11 54635392 54635474 -94147998 + L1MA3 LINE L1 6213 6298 -7 590 373 63 30 chr11 54636283 54636787 -94146685 + L2 LINE L2 2455 2975 -339 2630 100 2 49 chr11 54636815 54637245 -94146227 - L1PB1 LINE L1 -2 6149 5740 372 288 70 4 chr11 54637834 54638063 -94145409 - L1M4 LINE L1 -2647 3499 3256 3531 192 33 9 chr11 54638206 54638328 -94145144 + L1 LINE L1 3548 3666 -2480 207 0 0 0 chr11 54638328 54638351 -94145121 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3531 192 33 9 chr11 54638351 54638995 -94144477 + L1 LINE L1 3666 4332 -1814 4579 133 24 20 chr11 54638995 54639762 -94143710 + MER4E LTR ERV1 1 770 -9 3032 137 88 21 chr11 54639786 54640354 -94143118 - MER4B LTR ERV1 -4 606 1 573 199 17 3 chr11 54640359 54640506 -94142966 + L1 LINE L1 4342 4497 -1649 2032 195 20 0 chr11 54640506 54640901 -94142571 - MER57A LTR ERV1 0 403 1 1603 123 15 22 chr11 54640901 54641169 -94142303 - MER57A-int LTR ERV1 0 7537 7272 779 122 24 8 chr11 54641169 54641292 -94142180 - LTR54B LTR ERV1 -371 127 3 15184 111 15 8 chr11 54641292 54643518 -94139954 - MER57A-int LTR ERV1 -391 7146 4905 1900 133 90 83 chr11 54643520 54643964 -94139508 - MER4B LTR ERV1 -162 448 2 1760 155 254 21 chr11 54643968 54644335 -94139137 + L1 LINE L1 4340 4620 -1526 7677 62 26 2 chr11 54644335 54644632 -94138840 - LTR13 LTR ERVK 0 1007 719 204 40 0 0 chr11 54644632 54644657 -94138815 + (GA)n Simple_repeat Simple_repeat 2 26 0 7677 62 26 2 chr11 54644657 54645342 -94138130 - LTR13 LTR ERVK -288 719 1 1760 155 254 21 chr11 54645342 54645451 -94138021 + L1 LINE L1 4620 4927 -1219 31 0 0 0 chr11 54646966 54646997 -94136475 + AT_rich Low_complexity Low_complexity 1 31 0 2139 88 0 0 chr11 54647024 54647320 -94136152 + L1PA7 LINE L1 5845 6140 -14 30 45 0 0 chr11 54647766 54647810 -94135662 + AT_rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr11 54647825 54647848 -94135624 + AT_rich Low_complexity Low_complexity 1 23 0 25 65 0 0 chr11 54647874 54647920 -94135552 + AT_rich Low_complexity Low_complexity 1 46 0 442 210 244 0 chr11 54648209 54648328 -94135144 + ERVL-B1 LTR ERVL 3329 3476 -2288 2143 214 70 9 chr11 54648332 54648791 -94134681 - Tigger7 DNA MER2_type -223 510 24 10799 196 34 26 chr11 54648809 54650130 -94133342 + ERVL-B1 LTR ERVL 3501 4850 -914 879 49 0 16 chr11 54650130 54650252 -94133220 - L1PA4 LINE L1 0 6155 6036 10799 196 34 26 chr11 54650252 54651175 -94132297 + ERVL-B1 LTR ERVL 4850 5764 0 2071 224 95 2 chr11 54651181 54651600 -94131872 + MLT2B1 LTR ERVL 19 484 -36 521 24 48 0 chr11 54651600 54651683 -94131789 + (TCTA)n Simple_repeat Simple_repeat 2 88 0 2071 224 95 2 chr11 54651683 54651715 -94131757 + MLT2B1 LTR ERVL 484 512 -8 22 0 0 0 chr11 54653006 54653028 -94130444 + AT_rich Low_complexity Low_complexity 1 22 0 35 41 0 0 chr11 54653668 54653717 -94129755 + AT_rich Low_complexity Low_complexity 1 49 0 240 167 42 0 chr11 54654577 54654649 -94128823 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 692 268 67 19 chr11 54654652 54654861 -94128611 - MER20 DNA MER1_type 0 219 1 213 374 30 0 chr11 54656083 54656182 -94127290 - L2 LINE L2 -8 3305 3204 229 235 0 0 chr11 54657066 54657117 -94126355 - L1M3b LINE L1 -5135 1146 1096 469 344 6 0 chr11 54657474 54657637 -94125835 - MIR SINE MIR -44 218 55 1614 187 0 11 chr11 54657663 54657947 -94125525 - AluJo SINE Alu -31 281 1 345 136 0 0 chr11 54657953 54658019 -94125453 + (TC)n Simple_repeat Simple_repeat 1 66 0 1803 159 3 3 chr11 54658020 54658309 -94125163 - AluSx SINE Alu -23 289 1 624 221 32 125 chr11 54658422 54658703 -94124769 + L1MA9 LINE L1 6034 6288 -24 1145 224 71 19 chr11 54659465 54659890 -94123582 + L1M4 LINE L1 3040 3486 -2660 1653 180 45 50 chr11 54659894 54660146 -94123326 + THE1C LTR MaLR 1 252 -123 2056 161 50 32 chr11 54660146 54660588 -94122884 + LTR7 LTR ERV1 1 450 0 1653 180 45 50 chr11 54660588 54660712 -94122760 + THE1C LTR MaLR 252 375 0 4705 143 2 59 chr11 54660714 54661593 -94121879 + THE1C-int LTR MaLR 3 831 -749 2748 148 49 13 chr11 54661588 54662060 -94121412 + THE1C-int LTR MaLR 1092 1580 0 * 1149 173 173 46 chr11 54662060 54662383 -94121089 + THE1B LTR MaLR 1 364 0 424 231 34 0 chr11 54662387 54662504 -94120968 + L1M4 LINE L1 3490 3610 -2536 782 214 46 17 chr11 54662506 54662663 -94120809 - MER44D DNA MER2_type 0 605 572 1971 185 39 17 chr11 54662663 54663019 -94120453 + THE1B LTR MaLR 1 364 0 5577 120 8 0 chr11 54663019 54663819 -94119653 + THE1B-int LTR MaLR 1 806 -774 38 51 0 0 chr11 54664056 54664115 -94119357 + AT_rich Low_complexity Low_complexity 1 59 0 23 33 0 0 chr11 54664446 54664476 -94118996 + AT_rich Low_complexity Low_complexity 1 30 0 2670 53 12 3 chr11 54664595 54664935 -94118537 - LTR14A LTR ERVK -1 343 1 697 68 94 34 chr11 54664938 54665055 -94118417 - HERVK14 LTR ERVK 0 5945 5822 363 177 0 16 chr11 54665055 54665117 -94118355 - MER41C LTR ERV1 -493 61 1 6027 61 32 43 chr11 54665117 54665972 -94117500 - HERVK14 LTR ERVK -186 5759 4915 * 13746 56 5 2 chr11 54665960 54667671 -94115801 - HERVK14 LTR ERVK -2403 3542 1828 358 296 168 60 chr11 54668695 54669147 -94114325 - L1M2 LINE L1 -5556 1293 793 2596 70 25 8 chr11 54669284 54669640 -94113832 - HERVK14 LTR ERVK -5583 362 1 2533 83 12 0 chr11 54669640 54669978 -94113494 - LTR14A LTR ERVK 0 344 3 22 99 0 0 chr11 54670968 54671039 -94112433 + AT_rich Low_complexity Low_complexity 1 71 0 23 54 0 0 chr11 54671056 54671093 -94112379 + AT_rich Low_complexity Low_complexity 1 37 0 915 319 76 10 chr11 54671110 54671493 -94111979 - MER69 DNA AcHobo -2116 410 3 403 231 0 10 chr11 54673227 54673331 -94110141 - L1M4c LINE L1 -3914 2470 2368 1047 364 19 35 chr11 54673351 54673974 -94109498 + L1PA16 LINE L1 788 1400 -6174 259 379 8 8 chr11 54673999 54674123 -94109349 + L1PA16 LINE L1 2163 2286 -5288 * 322 323 0 0 chr11 54674093 54674192 -94109280 + L1PA16 LINE L1 2084 2182 -5399 10505 235 77 20 chr11 54674424 54675043 -94108429 + L1PA16 LINE L1 2201 2783 -4821 2452 65 0 0 chr11 54675043 54675334 -94108138 - AluY SINE Alu -20 291 1 10505 235 77 20 chr11 54675334 54676911 -94106561 + L1PA16 LINE L1 2783 4268 -3336 190 0 32 32 chr11 54676911 54676942 -94106530 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 10505 235 77 20 chr11 54676942 54679195 -94104277 + L1PA16 LINE L1 4268 7001 -603 216 0 0 0 chr11 54679195 54679219 -94104253 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 10505 235 77 20 chr11 54679219 54679860 -94103612 + L1PA16 LINE L1 7001 7604 0 871 300 54 32 chr11 54680232 54680953 -94102519 + L1MEc LINE L1 753 1489 -4907 796 293 5 0 chr11 54681823 54682038 -94101434 + MIR SINE MIR 13 228 -34 1608 114 0 9 chr11 54684220 54684448 -94099024 + AluSg/x SINE Alu 85 310 0 1982 133 3 3 chr11 54685276 54685570 -94097902 - AluSx SINE Alu -18 294 1 21 0 0 0 chr11 54685674 54685695 -94097777 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr11 54685806 54685838 -94097634 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr11 54685953 54685982 -94097490 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr11 54686067 54686095 -94097377 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 54686665 54686687 -94096785 + AT_rich Low_complexity Low_complexity 1 22 0 556 288 36 5 chr11 54687165 54687384 -94096088 + L1ME2 LINE L1 4663 4888 -1258 1519 255 94 27 chr11 54687393 54688060 -94095412 + L1ME2 LINE L1 5266 5977 -187 316 152 15 0 chr11 54688785 54688851 -94094621 - L1MA9 LINE L1 0 6312 6246 873 118 7 15 chr11 54688852 54688867 -94094605 - AluJo SINE Alu -177 135 121 450 0 0 0 chr11 54688867 54688917 -94094555 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 873 118 7 15 chr11 54688917 54689036 -94094436 - AluJo SINE Alu -191 121 2 1228 174 21 0 chr11 54689038 54689274 -94094198 - L1MA9 LINE L1 -62 6250 6010 675 190 22 0 chr11 54689310 54689447 -94094025 - L1MA9 LINE L1 -268 6044 5905 1877 180 10 58 chr11 54689847 54690242 -94093230 + MLT1B LTR MaLR 1 376 -14 21 0 0 0 chr11 54690659 54690680 -94092792 + AT_rich Low_complexity Low_complexity 1 21 0 31 0 0 0 chr11 54692014 54692045 -94091427 + AT_rich Low_complexity Low_complexity 1 31 0 2001 109 29 0 chr11 54692108 54692405 -94091067 + AluSx SINE Alu 3 307 0 305 102 0 68 chr11 54692407 54692466 -94091006 + Alu SINE Alu 257 308 0 21 57 0 0 chr11 54693097 54693132 -94090340 + AT_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr11 54695033 54695069 -94088403 + AT_rich Low_complexity Low_complexity 1 36 0 304 277 32 32 chr11 54695209 54695303 -94088169 + L2 LINE L2 2958 3051 -262 24 0 0 0 chr11 54696097 54696121 -94087351 + AT_rich Low_complexity Low_complexity 1 24 0 26 30 0 0 chr11 54696166 54696199 -94087273 + AT_rich Low_complexity Low_complexity 1 33 0 25 31 0 0 chr11 54698769 54698801 -94084671 + AT_rich Low_complexity Low_complexity 1 32 0 1819 169 7 0 chr11 54698985 54699287 -94084185 + AluSx SINE Alu 6 309 -3 1682 291 92 22 chr11 54699442 54700125 -94083347 + L1 LINE L1 7 737 -6293 2403 206 15 13 chr11 54700191 54700739 -94082733 + L1 LINE L1 4445 4993 -2113 1717 134 17 14 chr11 54700744 54701036 -94082436 - L1MA3 LINE L1 -220 6085 5793 1588 179 20 17 chr11 54701401 54701703 -94081769 - AluJo SINE Alu -9 303 1 3826 197 103 115 chr11 54702015 54702276 -94081196 + L1MC3 LINE L1 5992 6254 -1531 1594 160 52 8 chr11 54702276 54702544 -94080928 + AluSx SINE Alu 2 281 -31 270 56 0 0 chr11 54702544 54702580 -94080892 + (CA)n Simple_repeat Simple_repeat 1 36 0 3826 197 103 115 chr11 54702580 54703488 -94079984 + L1MC3 LINE L1 6253 7225 -560 293 235 35 35 chr11 54703488 54703573 -94079899 + MLT1F1 LTR MaLR 40 124 -443 3826 197 103 115 chr11 54703573 54703966 -94079506 + L1MC3 LINE L1 7225 7621 -164 398 258 16 31 chr11 54704217 54704345 -94079127 - L1MC4 LINE L1 -1248 6794 6669 1093 194 18 5 chr11 54704351 54704573 -94078899 + AluJo SINE Alu 5 229 -83 516 200 0 0 chr11 54704573 54704663 -94078809 + AluJo/FRAM SINE Alu 192 281 -31 251 28 28 0 chr11 54704678 54704714 -94078758 + (TCTA)n Simple_repeat Simple_repeat 1 37 0 445 267 88 66 chr11 54704719 54704992 -94078480 - L1MC4 LINE L1 -1355 6687 6409 1827 154 32 0 chr11 54706165 54706450 -94077022 + AluSx SINE Alu 1 294 -18 207 0 0 0 chr11 54707770 54707793 -94075679 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 384 409 71 15 chr11 54707890 54708428 -94075044 - L2 LINE L2 -964 2350 1783 222 360 132 35 chr11 54709160 54709449 -94074023 - L2 LINE L2 -2423 891 575 1686 145 33 110 chr11 54709456 54709848 -94073624 + THE1C LTR MaLR 14 375 0 9423 138 18 35 chr11 54709848 54711455 -94072017 + THE1C-int LTR MaLR 1 1580 0 1283 170 30 34 chr11 54711457 54711722 -94071750 + THE1C LTR MaLR 3 266 -109 366 145 0 16 chr11 54711707 54711769 -94071703 + THE1C LTR MaLR 368 428 0 * 624 191 8 38 chr11 54713068 54713199 -94070273 - FLAM_C SINE Alu -16 127 1 189 291 146 0 chr11 54714544 54714599 -94068873 - MIR SINE MIR -163 99 37 267 31 0 0 chr11 54714703 54714735 -94068737 + (GA)n Simple_repeat Simple_repeat 1 32 0 412 325 49 20 chr11 54715077 54715323 -94068149 + MIR SINE MIR 8 260 -2 29 0 0 0 chr11 54715815 54715844 -94067628 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr11 54716906 54716935 -94066537 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr11 54717102 54717130 -94066342 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr11 54717400 54717420 -94066052 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 741 154 0 0 chr11 54717430 54717547 -94065925 - FLAM_C SINE Alu -26 117 1 448 342 80 5 chr11 54717603 54717802 -94065670 - MIR SINE MIR -21 241 28 1864 144 7 3 chr11 54719105 54719403 -94064069 + MER57B LTR ERV1 136 434 0 3908 147 7 54 chr11 54719403 54720110 -94063362 + MER57B-int LTR ERV1 1 674 -6863 747 95 0 0 chr11 54720110 54720215 -94063257 + AluSg SINE Alu 2 106 -204 5064 147 54 28 chr11 54720215 54721284 -94062188 + pTR5 LTR ERV1 743 2021 -417 367 179 0 36 chr11 54721288 54721372 -94062100 + LTR30 LTR ERV1 544 624 -98 1460 104 5 5 chr11 54721389 54721610 -94061862 + pTR5 LTR ERV1 172 392 -2046 1280 107 6 0 chr11 54721610 54721787 -94061685 + AluSg SINE Alu 103 280 -30 1936 134 51 13 chr11 54721821 54722134 -94061338 + LTR30-int LTR ERV1 289 613 -5333 427 186 101 81 chr11 54722142 54722389 -94061083 + HERVKC4 LTR ERVK 2704 2955 -2307 * 2606 165 50 77 chr11 54722168 54722854 -94060618 + MER57B-int LTR ERV1 3375 4041 -1905 * 11784 120 39 5 chr11 54722845 54724626 -94058846 + MER57B-int LTR ERV1 5307 7149 -388 658 165 26 0 chr11 54724626 54724741 -94058731 + LTR54B LTR ERV1 3 120 -378 925 130 37 1 chr11 54724741 54724979 -94058493 + MER57B-int LTR ERV1 7264 7537 0 2714 122 16 14 chr11 54724989 54725415 -94058057 + MER57B LTR ERV1 5 431 -3 791 339 63 32 chr11 54725759 54726317 -94057155 + ERVL LTR ERVL 3369 3943 -1821 292 67 155 0 chr11 54726694 54726745 -94056727 + L1PA8 LINE L1 4955 5014 -1132 5051 88 6 3 chr11 54726759 54727462 -94056010 + L1PA8 LINE L1 5338 6042 -130 26 0 0 0 chr11 54729932 54729958 -94053514 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr11 54730968 54730990 -94052482 + AT_rich Low_complexity Low_complexity 1 22 0 342 319 123 29 chr11 54732846 54733050 -94050422 - L2 LINE L2 -338 2976 2754 515 245 124 76 chr11 54733212 54733233 -94050239 - L1MC4a LINE L1 -1805 6003 5984 1867 153 3 7 chr11 54733233 54733528 -94049944 - AluSx SINE Alu -5 307 14 515 245 124 76 chr11 54733528 54733926 -94049546 - L1MC4a LINE L1 -1824 5984 5564 1074 92 0 0 chr11 54733929 54734105 -94049367 - AluY SINE Alu 0 319 144 216 0 0 0 chr11 54734580 54734604 -94048868 + (TTAA)n Simple_repeat Simple_repeat 4 27 0 2199 67 0 3 chr11 54734604 54734886 -94048586 - AluY SINE Alu -30 281 1 1347 277 94 66 chr11 54734888 54735671 -94047801 - L1ME3A LINE L1 -62 6108 5295 8091 98 15 2 chr11 54735692 54737623 -94045849 - L1PA7 LINE L1 -11 6143 4201 3911 108 2 5 chr11 54737623 54738198 -94045274 + L1P LINE L1 3441 4013 -2133 2158 103 0 3 chr11 54738539 54738829 -94044643 + AluSc SINE Alu 1 289 -20 372 279 66 0 chr11 54739767 54739889 -94043583 - L1ME4a LINE L1 -59 6062 5933 25 31 0 0 chr11 54740428 54740460 -94043012 + AT_rich Low_complexity Low_complexity 1 32 0 601 291 9 55 chr11 54740482 54740702 -94042770 - MER63A DNA MER1_type 0 210 1 4886 173 18 60 chr11 54742868 54744023 -94039449 - L1MA3 LINE L1 -2 6303 5194 954 197 167 0 chr11 54744469 54744746 -94038726 + L1MC4 LINE L1 6241 6358 -1 3923 138 29 12 chr11 54744752 54745713 -94037759 + L1PB3 LINE L1 4900 5877 -277 1585 60 5 5 chr11 54745815 54746016 -94037456 + AluY SINE Alu 99 299 -12 1807 176 46 9 chr11 54746018 54746470 -94037002 + L1PA13 LINE L1 5665 6163 0 336 351 169 38 chr11 54746649 54747946 -94035526 + L2 LINE L2 1771 3257 -15 200 234 0 21 chr11 54748121 54748168 -94035304 - MIR3 SINE MIR -43 165 120 555 252 85 6 chr11 54748294 54748467 -94035005 - MIR SINE MIR -12 250 58 339 281 104 90 chr11 54748537 54748872 -94034600 + LTR33 LTR ERVL 76 415 -106 23 54 0 0 chr11 54749553 54749590 -94033882 + AT_rich Low_complexity Low_complexity 1 37 0 266 277 36 48 chr11 54751422 54751505 -94031967 + L2 LINE L2 2919 3000 -313 458 282 49 21 chr11 54751506 54751648 -94031824 + L2 LINE L2 3153 3298 -15 208 303 30 0 chr11 54753005 54753071 -94030401 - L2 LINE L2 -213 3059 2992 190 270 56 22 chr11 54753436 54753525 -94029947 + L2 LINE L2 3217 3308 -5 28 29 0 0 chr11 54754226 54754261 -94029211 + AT_rich Low_complexity Low_complexity 1 35 0 209 314 0 14 chr11 54755665 54755735 -94027737 - MER5B DNA MER1_type -8 170 102 575 307 25 5 chr11 54756028 54756230 -94027242 + Charlie2 DNA MER1_type 74 279 -2583 302 227 35 35 chr11 54756441 54756582 -94026890 + Charlie2 DNA MER1_type 2694 2834 -28 195 42 0 0 chr11 54757621 54757645 -94025827 + (GA)n Simple_repeat Simple_repeat 2 25 0 203 61 30 0 chr11 54757709 54757742 -94025730 + (TTA)n Simple_repeat Simple_repeat 2 35 0 801 87 0 0 chr11 54757748 54757851 -94025621 - AluSp/q SINE Alu -30 283 181 483 321 57 5 chr11 54758436 54758629 -94024843 + MIR SINE MIR 54 256 -6 22 0 0 0 chr11 54759332 54759354 -94024118 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr11 54759583 54759612 -94023860 + AT_rich Low_complexity Low_complexity 1 29 0 421 290 158 44 chr11 54759623 54760083 -94023389 - MLT1G1 LTR MaLR 0 555 16 209 310 28 14 chr11 54760988 54761059 -94022413 - MIR3 SINE MIR -5 203 132 25 0 0 0 chr11 54762072 54762097 -94021375 + AT_rich Low_complexity Low_complexity 1 25 0 9160 95 15 3 chr11 54763111 54764379 -94019093 + HSMAR1 DNA Mariner 2 1284 -3 21 36 0 0 chr11 54764511 54764539 -94018933 + AT_rich Low_complexity Low_complexity 1 28 0 2558 174 4 10 chr11 54764691 54765179 -94018293 - MER31A LTR ERV1 0 485 1 222 91 0 0 chr11 54765181 54765214 -94018258 + (TATG)n Simple_repeat Simple_repeat 2 34 0 422 321 89 9 chr11 54765381 54765605 -94017867 + MIR SINE MIR 11 252 -10 238 322 158 0 chr11 54765703 54765849 -94017623 - MIR SINE MIR -82 180 12 25 0 0 0 chr11 54767300 54767325 -94016147 + AT_rich Low_complexity Low_complexity 1 25 0 2160 221 30 47 chr11 54767538 54768182 -94015290 - LTR27 LTR ERV1 -2 634 2 25 0 0 0 chr11 54768198 54768223 -94015249 + AT_rich Low_complexity Low_complexity 1 25 0 415 344 70 37 chr11 54768364 54768634 -94014838 + L1M4 LINE L1 3914 4192 -1954 279 225 0 0 chr11 54768803 54768874 -94014598 + (CATATA)n Simple_repeat Simple_repeat 2 72 0 225 256 64 32 chr11 54769029 54769154 -94014318 + L1M4 LINE L1 4521 4649 -1497 206 250 0 66 chr11 54769154 54769230 -94014242 + (TA)n Simple_repeat Simple_repeat 2 72 0 359 349 66 12 chr11 54769534 54769700 -94013772 + L2 LINE L2 3117 3291 -22 25 75 0 0 chr11 54769814 54769867 -94013605 + AT_rich Low_complexity Low_complexity 1 53 0 432 146 10 21 chr11 54769965 54770061 -94013411 + GA-rich Low_complexity Low_complexity 4 98 0 2012 141 0 0 chr11 54770601 54770899 -94012573 + AluSx SINE Alu 1 298 -14 525 315 65 0 chr11 54771020 54771220 -94012252 - MIR SINE MIR -40 222 10 1127 315 110 29 chr11 54771231 54771953 -94011519 - L2 LINE L2 -308 3005 2232 2146 207 71 45 chr11 54771983 54772417 -94011055 - MER6A DNA MER2_type -265 600 179 3375 118 0 6 chr11 54772417 54772918 -94010554 - L1PA14 LINE L1 -2 6159 5662 2146 207 71 45 chr11 54772918 54772966 -94010506 - MER6A DNA MER2_type -686 179 134 563 0 15 0 chr11 54772966 54773033 -94010439 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 2146 207 71 45 chr11 54773033 54773409 -94010063 - MER6A DNA MER2_type -731 134 2 275 0 29 0 chr11 54773411 54773446 -94010026 + (TG)n Simple_repeat Simple_repeat 2 37 0 883 286 55 46 chr11 54773450 54773884 -94009588 - L2 LINE L2 -1116 2198 1761 231 191 0 0 chr11 54774961 54775003 -94008469 + (TG)n Simple_repeat Simple_repeat 2 43 0 23 54 0 0 chr11 54775405 54775442 -94008030 + AT_rich Low_complexity Low_complexity 1 37 0 1315 237 93 93 chr11 54775762 54776704 -94006768 - LTR1B LTR ERV1 0 1020 1 888 231 101 12 chr11 54776876 54777120 -94006352 - MLT1C LTR MaLR -1 466 201 429 240 39 0 chr11 54777120 54777224 -94006248 + MSTC LTR MaLR 1 108 -320 * 1162 125 0 0 chr11 54777223 54777391 -94006081 - MER4E LTR ERV1 -6 760 593 23 54 0 0 chr11 54777515 54777552 -94005920 + AT_rich Low_complexity Low_complexity 1 37 0 1793 120 18 35 chr11 54778306 54778620 -94004852 + AluSc SINE Alu 3 311 0 330 328 46 0 chr11 54778874 54779005 -94004467 - L2 LINE L2 -1 3312 3176 376 302 132 13 chr11 54779385 54779544 -94003928 + MIR SINE MIR 15 192 -70 213 235 0 0 chr11 54779578 54779629 -94003843 + (TTA)n Simple_repeat Simple_repeat 2 52 0 1794 163 17 0 chr11 54780577 54780878 -94002594 - AluSx SINE Alu -6 306 1 234 220 0 0 chr11 54782032 54782091 -94001381 + (TA)n Simple_repeat Simple_repeat 2 60 0 29 60 0 0 chr11 54783156 54783206 -94000266 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr11 54785235 54785256 -93998216 + AT_rich Low_complexity Low_complexity 1 21 0 1485 138 0 0 chr11 54785310 54785549 -93997923 - L1PA13 LINE L1 0 6163 5925 5261 15 0 0 chr11 54785550 54786150 -93997322 - L1PA3 LINE L1 -1 6154 5555 2382 111 32 24 chr11 54786150 54786529 -93996943 - L1PA13 LINE L1 -231 5937 5556 1111 141 11 5 chr11 54786532 54786723 -93996749 + L1PA13 LINE L1 5362 5553 -610 1487 164 4 8 chr11 54787579 54787835 -93995637 + L1PA15 LINE L1 5903 6157 -8 333 308 28 49 chr11 54788062 54788205 -93995267 - MIR SINE MIR -116 146 7 672 242 108 40 chr11 54788399 54788893 -93994579 + LTR28 LTR ERV1 4 1284 -137 5411 239 35 69 chr11 54789011 54791406 -93992066 - L1P4 LINE L1 -502 5664 3364 261 196 0 0 chr11 54791404 54791455 -93992017 + L1P4 LINE L1 3309 3359 -2787 * 562 214 87 35 chr11 54792087 54792260 -93991212 + MLT1B LTR MaLR 4 185 -205 27 0 0 0 chr11 54792261 54792288 -93991184 + AT_rich Low_complexity Low_complexity 1 27 0 506 179 14 18 chr11 54792293 54792417 -93991055 - MSTC LTR MaLR -13 388 262 5247 201 25 22 chr11 54792417 54794152 -93989320 + L1PA16 LINE L1 3935 5671 -495 700 201 82 138 chr11 54794243 54794700 -93988772 - LTR28 LTR ERV1 -523 1232 2 2645 163 6 48 chr11 54794700 54795215 -93988257 + L1PA16 LINE L1 5666 6158 -8 652 286 12 0 chr11 54795220 54795388 -93988084 + MLT1E1 LTR MaLR 444 613 -41 518 101 13 0 chr11 54798567 54798646 -93984826 + MADE1 DNA Mariner 1 80 0 409 305 8 0 chr11 54798900 54799018 -93984454 - MIR SINE MIR -92 170 52 334 304 93 19 chr11 54800271 54800485 -93982987 + MIR SINE MIR 33 262 0 1995 137 3 0 chr11 54800601 54800901 -93982571 + AluSx SINE Alu 3 303 -9 1130 148 82 55 chr11 54800914 54801170 -93982302 - L1PA15 LINE L1 0 6165 5903 333 0 0 0 chr11 54801436 54801443 -93982029 + (TG)n Simple_repeat Simple_repeat 1 44 0 333 0 0 0 chr11 54801443 54801480 -93981992 + (TG)n Simple_repeat Simple_repeat 1 37 0 1066 145 32 0 chr11 54802285 54802471 -93981001 - L1PA13 LINE L1 -610 5553 5362 3599 135 32 3 chr11 54802471 54803065 -93980407 + L1PA13 LINE L1 5548 6163 0 30 45 0 0 chr11 54803119 54803163 -93980309 + AT_rich Low_complexity Low_complexity 1 44 0 203 255 0 0 chr11 54805260 54805311 -93978161 - L2 LINE L2 -3 3269 3219 246 207 0 0 chr11 54806273 54806331 -93977141 + (TA)n Simple_repeat Simple_repeat 1 58 0 380 250 230 7 chr11 54808448 54808600 -93974872 - MIR SINE MIR -62 200 15 350 325 42 0 chr11 54808977 54809097 -93974375 + L2 LINE L2 3183 3307 -6 26 50 0 0 chr11 54810136 54810176 -93973296 + AT_rich Low_complexity Low_complexity 1 40 0 1057 160 6 0 chr11 54810276 54810445 -93973027 + MER4E LTR ERV1 593 762 -4 461 240 39 0 chr11 54810442 54810546 -93972926 - MSTC LTR MaLR -320 108 1 * 732 240 132 21 chr11 54810546 54810785 -93972687 + MLT1C LTR MaLR 201 466 -1 1327 204 13 45 chr11 54811406 54811715 -93971757 - AluJb SINE Alu -12 300 2 422 172 73 150 chr11 54811796 54811945 -93971527 + MER21B LTR ERV1 629 752 -111 225 0 0 0 chr11 54811954 54811979 -93971493 + (CA)n Simple_repeat Simple_repeat 2 26 0 225 0 0 0 chr11 54812623 54812648 -93970824 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 764 214 26 0 chr11 54812651 54812805 -93970667 - FAM SINE Alu -17 158 1 1647 173 0 23 chr11 54812945 54813246 -93970226 + AluJb SINE Alu 1 294 -18 1652 136 66 4 chr11 54813678 54813935 -93969537 - AluSc SINE Alu -30 279 7 324 326 0 0 chr11 54815464 54815556 -93967916 - MIR3 SINE MIR -23 185 94 1867 159 0 20 chr11 54816253 54816554 -93966918 + AluSx SINE Alu 1 295 -17 538 111 0 30 chr11 54816554 54816653 -93966819 + (GGAA)n Simple_repeat Simple_repeat 1 96 0 589 273 75 39 chr11 54816665 54817024 -93966448 + L1M4 LINE L1 4476 4847 -1299 29 47 0 0 chr11 54817265 54817308 -93966164 + AT_rich Low_complexity Low_complexity 1 43 0 284 329 0 0 chr11 54817677 54817753 -93965719 - L2 LINE L2 -12 3301 3226 21 0 0 0 chr11 54819842 54819863 -93963609 + AT_rich Low_complexity Low_complexity 1 21 0 282 301 187 32 chr11 54820229 54820352 -93963120 - MIR SINE MIR -73 189 48 194 400 57 19 chr11 54821199 54821304 -93962168 - L2 LINE L2 -47 3225 3117 2889 196 40 56 chr11 54821369 54822103 -93961369 + MER72 LTR ERV1 1 722 0 2000 155 0 0 chr11 54822165 54822455 -93961017 - AluSq SINE Alu -23 290 1 4216 161 11 0 chr11 54822521 54823229 -93960243 + LTR62 LTR ERVK 2 717 -2 280 286 114 18 chr11 54823394 54823614 -93959858 + HAL1 LINE L1 1857 2097 -410 446 275 109 37 chr11 54823657 54824032 -93959440 + HAL1 LINE L1 2083 2484 -23 22 0 0 0 chr11 54824055 54824077 -93959395 + AT_rich Low_complexity Low_complexity 1 22 0 659 323 83 31 chr11 54824220 54824604 -93958868 - MLT1I LTR MaLR -1 408 5 275 143 0 0 chr11 54824669 54824711 -93958761 + Alu SINE Alu 1 42 -260 1470 118 13 9 chr11 54824711 54824939 -93958533 + AluSg/x SINE Alu 79 307 -3 223 333 0 18 chr11 54826189 54826303 -93957169 + T-rich Low_complexity Low_complexity 3 114 0 1210 88 0 0 chr11 54826796 54826955 -93956517 + AluY SINE Alu 138 296 -15 280 287 37 9 chr11 54827150 54827258 -93956214 + LTR67 LTR ERVL 427 537 -20 298 236 14 0 chr11 54827522 54827594 -93955878 - L1ME2 LINE L1 -17 6147 6075 254 322 44 0 chr11 54827767 54827857 -93955615 - MIR SINE MIR -5 257 164 336 360 68 28 chr11 54827937 54828187 -93955285 + MIR SINE MIR 3 262 0 1644 177 35 53 chr11 54828876 54829272 -93954200 + MLT1B LTR MaLR 1 389 -1 1514 267 64 56 chr11 54829363 54830147 -93953325 - L1ME3A LINE L1 -4 6166 5392 3370 70 17 4 chr11 54831116 54831576 -93951896 + SVA Other Other 2 467 -919 1623 174 0 24 chr11 54831576 54831869 -93951603 - AluJb SINE Alu -26 286 1 501 227 16 39 chr11 54832010 54832138 -93951334 + FRAM SINE Alu 1 125 -51 4300 52 4 0 chr11 54832239 54832778 -93950694 + SVA Other Other 860 1400 0 222 171 0 0 chr11 54832910 54832951 -93950521 + (CATATA)n Simple_repeat Simple_repeat 1 41 0 359 316 57 92 chr11 54833106 54833239 -93950233 - L1MEd LINE L1 -5448 671 535 2069 124 3 0 chr11 54833239 54833545 -93949927 - AluY SINE Alu -4 307 1 359 316 57 92 chr11 54833545 54833800 -93949672 - L1MEd LINE L1 -5584 535 297 1507 194 0 48 chr11 54834316 54834625 -93948847 + AluJb SINE Alu 1 294 -18 211 248 8 51 chr11 54836137 54836254 -93947218 + CT-rich Low_complexity Low_complexity 5 116 0 267 296 37 9 chr11 54836931 54837039 -93946433 + LTR67 LTR ERVL 427 537 -20 2579 187 29 62 chr11 54837234 54837950 -93945522 - LTR5 LTR ERVK 0 969 277 1387 197 10 86 chr11 54837954 54838361 -93945111 - LTR5 LTR ERVK -593 376 1 290 208 28 14 chr11 54838443 54838515 -93944957 - L1ME2 LINE L1 -17 6147 6075 268 300 44 0 chr11 54838688 54838778 -93944694 - MIR SINE MIR -5 257 164 296 392 60 20 chr11 54838858 54839108 -93944364 + MIR SINE MIR 3 262 0 1732 172 35 51 chr11 54839795 54840190 -93943282 + MLT1B LTR MaLR 1 389 -1 1415 264 85 83 chr11 54840283 54840357 -93943115 - L1ME3A LINE L1 -5 6165 6093 2300 81 3 0 chr11 54840357 54840653 -93942819 - AluY SINE Alu -14 297 1 1415 264 85 83 chr11 54840653 54841388 -93942084 - L1ME3A LINE L1 -77 6093 5354 8118 97 15 2 chr11 54841458 54843389 -93940083 - L1PA7 LINE L1 -11 6143 4201 5106 107 5 4 chr11 54843389 54844137 -93939335 + L1PA7 LINE L1 3441 4189 -1957 198 209 0 0 chr11 54845064 54845107 -93938365 + (CATA)n Simple_repeat Simple_repeat 1 43 0 455 345 68 26 chr11 54845320 54845627 -93937845 - L1MEd LINE L1 -5503 616 297 1344 214 0 60 chr11 54846182 54846481 -93936991 + AluJb SINE Alu 1 281 -31 213 39 0 0 chr11 54846486 54846512 -93936960 + (TTG)n Simple_repeat Simple_repeat 2 27 0 27 29 0 0 chr11 54848727 54848761 -93934711 + AT_rich Low_complexity Low_complexity 1 34 0 529 321 112 24 chr11 54848847 54849177 -93934295 + MLT1J LTR MaLR 153 511 0 25 51 0 0 chr11 54849508 54849547 -93933925 + AT_rich Low_complexity Low_complexity 1 39 0 268 258 16 0 chr11 54849930 54849992 -93933480 + (CATA)n Simple_repeat Simple_repeat 2 64 0 308 308 121 22 chr11 54850292 54850474 -93932998 + MIR SINE MIR 57 256 -6 187 311 83 15 chr11 54851335 54851467 -93932005 - MIR SINE MIR -51 211 71 243 0 0 0 chr11 54851720 54851747 -93931725 + (T)n Simple_repeat Simple_repeat 1 27 0 386 255 20 0 chr11 54851938 54852036 -93931436 - MLT-int LTR MaLR -1008 727 628 2609 127 92 27 chr11 54852045 54852558 -93930914 - LTR10A LTR ERV1 -63 546 1 251 130 43 0 chr11 54852573 54852619 -93930853 - LTR10B LTR ERV1 -499 48 1 2273 241 41 10 chr11 54852619 54853230 -93930242 - MSTD-int LTR MaLR -1105 630 1 1208 258 57 44 chr11 54853230 54853614 -93929858 - MSTD LTR MaLR -2 394 6 195 387 0 19 chr11 54853770 54853876 -93929596 + L2 LINE L2 2947 3050 -222 3942 218 66 9 chr11 54853965 54855466 -93928006 - ERVL-B1 LTR ERVL -3532 2232 584 1480 260 103 7 chr11 54855484 54855900 -93927572 - ERVL-B1 LTR ERVL -5307 457 2 2508 188 13 47 chr11 54855901 54855990 -93927482 - MLT2B1 LTR ERVL 0 520 430 204 40 0 0 chr11 54855990 54856015 -93927457 + (CA)n Simple_repeat Simple_repeat 2 26 0 2508 188 13 47 chr11 54856015 54856461 -93927011 - MLT2B1 LTR ERVL -90 430 3 315 68 51 0 chr11 54857394 54857453 -93926019 + (TCTA)n Simple_repeat Simple_repeat 3 64 0 518 256 51 45 chr11 54857682 54857838 -93925634 - MIR SINE MIR -14 248 92 240 331 177 11 chr11 54858122 54858303 -93925169 + MIR SINE MIR 26 236 -26 259 268 0 0 chr11 54862239 54862295 -93921177 + CT-rich Low_complexity Low_complexity 1 56 0 1623 172 52 15 chr11 54862524 54862849 -93920623 - MER1B DNA MER1_type 0 337 1 21 0 0 0 chr11 54863459 54863480 -93919992 + AT_rich Low_complexity Low_complexity 1 21 0 277 294 79 72 chr11 54863528 54863793 -93919679 - MER102a DNA MER1_type -1 329 63 223 369 69 15 chr11 54864170 54864300 -93919172 - L2 LINE L2 -201 3071 2935 320 230 29 65 chr11 54865222 54865361 -93918111 + MER103 DNA DNA 13 146 -20 679 50 30 0 chr11 54865852 54865951 -93917521 + (TAGA)n Simple_repeat Simple_repeat 4 105 0 1167 181 113 53 chr11 54867618 54867918 -93915554 + AluJo SINE Alu 1 316 0 237 341 23 0 chr11 54868503 54868591 -93914881 + MIR3 SINE MIR 112 201 -7 2225 144 23 30 chr11 54868787 54869224 -93914248 - L1MA5A LINE L1 -1 6296 5863 1327 148 17 4 chr11 54870669 54870905 -93912567 - L1PA13 LINE L1 -1 6162 5924 9984 197 23 7 chr11 54870906 54871738 -93911734 - L1PA13 LINE L1 -785 5361 4544 3007 94 8 86 chr11 54871738 54872229 -93911243 - MLT2A2 LTR ERVL 0 453 1 9984 197 23 7 chr11 54872229 54873492 -93909980 - L1PA13 LINE L1 -1602 4544 3232 519 294 82 47 chr11 54873567 54873910 -93909562 + L2 LINE L2 2955 3309 -4 28 48 0 0 chr11 54873966 54874008 -93909464 + AT_rich Low_complexity Low_complexity 1 42 0 2139 129 7 0 chr11 54874669 54874971 -93908501 + AluSq SINE Alu 1 304 -9 450 273 78 43 chr11 54874979 54875261 -93908211 + L1M4 LINE L1 4069 4360 -1786 1517 219 3 3 chr11 54875640 54875927 -93907545 + AluJo SINE Alu 3 289 -23 316 325 153 12 chr11 54876670 54876833 -93906639 - MER5A DNA MER1_type 0 189 4 389 20 20 0 chr11 54878197 54878247 -93905225 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 213 338 149 26 chr11 54878659 54878813 -93904659 - MER5A DNA MER1_type -1 188 16 242 302 0 0 chr11 54879227 54879290 -93904182 - MIR SINE MIR -124 138 76 306 299 216 25 chr11 54879784 54880025 -93903447 - L2 LINE L2 -4 3309 3023 1902 143 14 0 chr11 54880025 54880318 -93903154 + AluSx SINE Alu 1 297 -15 1548 151 136 57 chr11 54880376 54880835 -93902637 + MER4B LTR ERV1 1 610 0 210 37 0 0 chr11 54880918 54880945 -93902527 + (CA)n Simple_repeat Simple_repeat 1 27 0 475 271 35 65 chr11 54881553 54881587 -93901885 - MER45A DNA AcHobo -1405 176 143 3466 182 22 52 chr11 54881587 54882396 -93901076 + LTR1 LTR ERV1 1 785 0 475 271 35 65 chr11 54882396 54882531 -93900941 - MER45A DNA AcHobo -1438 143 12 663 231 44 22 chr11 54882969 54883194 -93900278 - L1MA9 LINE L1 -40 6272 6043 1570 224 19 14 chr11 54883194 54883565 -93899907 + L1MA9 LINE L1 5660 6032 -280 208 143 0 0 chr11 54883643 54883678 -93899794 + (T)n Simple_repeat Simple_repeat 1 35 0 228 35 0 0 chr11 54883716 54883745 -93899727 + (T)n Simple_repeat Simple_repeat 1 29 0 333 0 0 0 chr11 54883910 54883947 -93899525 + (T)n Simple_repeat Simple_repeat 1 37 0 41566 39 27 2 chr11 54883979 54889981 -93893491 - L1PA3 LINE L1 0 6155 2 189 294 167 39 chr11 54890906 54891008 -93892464 + MIR3 SINE MIR 49 163 -45 333 290 152 7 chr11 54891145 54891283 -93892189 + MIR SINE MIR 96 253 -9 310 355 99 42 chr11 54891879 54892305 -93891167 + L1M1 LINE L1 1226 1675 -5821 2001 131 14 10 chr11 54892667 54892964 -93890508 + AluSx SINE Alu 1 298 -14 708 280 38 30 chr11 54892974 54893338 -93890134 + L1M1 LINE L1 2318 2682 -4804 1211 212 116 3 chr11 54893871 54894164 -93889308 - MLT1D LTR MaLR 0 505 180 1587 101 9 13 chr11 54894181 54894409 -93889063 - AluSq SINE Alu -17 296 70 405 354 124 6 chr11 54894881 54895059 -93888413 + MIR SINE MIR 8 206 -56 742 298 106 13 chr11 54895247 54895549 -93887923 - L2 LINE L2 -4 3309 2980 2748 240 38 57 chr11 54897038 54897230 -93886242 + L1M1 LINE L1 2574 2768 -4797 1968 159 105 5 chr11 54897230 54897619 -93885853 + MSTA LTR MaLR 1 428 0 8592 167 13 37 chr11 54897621 54899238 -93884234 + MSTA-int LTR MaLR 3 1580 0 2096 147 96 10 chr11 54899238 54899632 -93883840 + MSTA LTR MaLR 1 428 0 2748 240 38 57 chr11 54899632 54900591 -93882881 + L1M1 LINE L1 2767 3714 -3851 * 3227 251 43 8 chr11 54900566 54901695 -93881777 + L1PA15-16 LINE L1 2888 4056 -2793 1571 207 18 25 chr11 54901679 54902071 -93881401 + L1M1 LINE L1 5665 6053 -796 * 558 147 35 56 chr11 54902093 54902236 -93881236 - L1PA13 LINE L1 -1 6162 6023 5823 139 10 34 chr11 54902248 54903086 -93880386 - L1PA14 LINE L1 -9 6152 5346 2085 128 0 0 chr11 54903086 54903400 -93880072 - AluSx SINE Alu 0 315 2 5823 139 10 34 chr11 54903400 54903938 -93879534 - L1PA14 LINE L1 -815 5346 4797 5682 189 27 11 chr11 54903943 54904636 -93878836 - L1PA16 LINE L1 -138 6028 5348 1564 90 0 0 chr11 54904636 54904847 -93878625 - L1PA7 LINE L1 -7 6147 5937 5682 189 27 11 chr11 54904847 54906238 -93877234 - L1M1 LINE L1 -818 6051 4620 988 229 4 19 chr11 54906240 54906498 -93876974 + L1M1 LINE L1 6055 6308 -695 307 303 9 55 chr11 54906594 54906703 -93876769 - MIR SINE MIR -126 136 33 1151 312 50 73 chr11 54906716 54907744 -93875728 - L1M3b LINE L1 -5267 1014 11 287 200 67 13 chr11 54908460 54908535 -93874937 + MADE1 DNA Mariner 1 79 -1 24 0 0 0 chr11 54908946 54908970 -93874502 + AT_rich Low_complexity Low_complexity 1 24 0 24 85 0 0 chr11 54909537 54909596 -93873876 + AT_rich Low_complexity Low_complexity 1 59 0 374 315 34 34 chr11 54910077 54910255 -93873217 + L1ME4a LINE L1 5490 5667 -454 323 326 117 25 chr11 54910498 54910780 -93872692 + L1ME4a LINE L1 5811 6118 -3 323 291 35 24 chr11 54911067 54911208 -93872264 + MIR SINE MIR 19 167 -62 32 57 0 0 chr11 54911355 54911408 -93872064 + AT_rich Low_complexity Low_complexity 1 53 0 2488 181 40 60 chr11 54912391 54912959 -93870513 + MER41D LTR ERV1 1 557 0 2061 120 7 19 chr11 54913343 54913678 -93869794 - AluSq SINE Alu 0 313 2 213 139 28 0 chr11 54915086 54915122 -93868350 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 2257 57 4 0 chr11 54915526 54915831 -93867641 + AluY SINE Alu 1 306 0 236 299 223 25 chr11 54915997 54916194 -93867278 - L2 LINE L2 -61 3252 3017 4245 60 2 29 chr11 54917600 54918236 -93865236 + L1PA4 LINE L1 5575 6191 0 462 261 113 81 chr11 54918993 54919191 -93864281 + L1ME2 LINE L1 4111 4301 -1845 1357 179 123 4 chr11 54919191 54919442 -93864030 + AluSx SINE Alu 1 281 -31 195 42 0 0 chr11 54919445 54919469 -93864003 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 462 261 113 81 chr11 54919469 54919787 -93863685 + L1ME2 LINE L1 4302 4648 -1498 957 256 83 72 chr11 54920095 54920817 -93862655 + L1ME2 LINE L1 4735 5486 -678 2223 205 49 23 chr11 54920817 54921343 -93862129 + MER67A LTR ERV1 1 540 -3 957 256 83 72 chr11 54921343 54921699 -93861773 + L1ME2 LINE L1 5486 5837 -327 212 0 36 0 chr11 54921709 54921737 -93861735 + (TCTA)n Simple_repeat Simple_repeat 1 29 0 945 234 35 9 chr11 54921754 54921985 -93861487 + L1M4 LINE L1 18 254 -6288 375 253 21 0 chr11 54921983 54922078 -93861394 + L1ME2 LINE L1 6057 6153 -11 * 222 217 22 0 chr11 54922390 54922436 -93861036 + GA-rich Low_complexity Low_complexity 2 48 0 202 128 21 43 chr11 54923385 54923432 -93860040 + (CATA)n Simple_repeat Simple_repeat 1 46 0 222 267 0 0 chr11 54923596 54923656 -93859816 + GA-rich Low_complexity Low_complexity 1 60 0 27144 29 0 0 chr11 54923955 54927984 -93855488 - L1PA3 LINE L1 -5 6150 2122 28919 47 37 2 chr11 54928084 54931774 -93851698 - L1P LINE L1 -2315 3831 13 2096 121 0 0 chr11 54932177 54932490 -93850982 - AluSg SINE Alu 0 313 1 1710 195 0 0 chr11 54932492 54932789 -93850683 - AluJb SINE Alu -15 297 1 1407 198 8 11 chr11 54933184 54933452 -93850020 - AluJb SINE Alu -44 268 2 400 291 96 59 chr11 54933518 54933996 -93849476 + L1ME3 LINE L1 5267 5777 -385 1793 108 19 0 chr11 54933996 54934254 -93849218 + AluSq SINE Alu 35 297 -16 400 291 96 59 chr11 54934254 54934418 -93849054 + L1ME3 LINE L1 5777 5933 -229 21 36 0 0 chr11 54934731 54934759 -93848713 + AT_rich Low_complexity Low_complexity 1 28 0 239 276 48 0 chr11 54934795 54934900 -93848572 + A-rich Low_complexity Low_complexity 2 111 0 2626 33 7 0 chr11 54935023 54935322 -93848150 + AluY SINE Alu 1 301 -10 219 231 19 0 chr11 54935398 54935450 -93848022 + (CA)n Simple_repeat Simple_repeat 2 54 0 386 256 47 17 chr11 54936040 54936212 -93847260 + (CTATA)n Simple_repeat Simple_repeat 3 179 0 271 181 66 173 chr11 54938127 54938353 -93845119 + MER106A DNA MER1_type 31 232 -4 2469 118 6 0 chr11 54938873 54939237 -93844235 - L1PB1 LINE L1 -1 6150 5785 262 146 0 21 chr11 54939274 54939322 -93844150 + L1P5 LINE L1 5749 5795 -356 2010 124 0 7 chr11 54939449 54939732 -93843740 - AluSq SINE Alu -32 281 1 576 265 103 18 chr11 54940402 54940625 -93842847 + MIR SINE MIR 8 249 -13 231 328 50 42 chr11 54940682 54940801 -93842671 + L2 LINE L2 3189 3308 -5 354 340 53 64 chr11 54941524 54941991 -93841481 + LTR33 LTR ERVL 23 484 -37 209 197 30 15 chr11 54943007 54943073 -93840399 + (TA)n Simple_repeat Simple_repeat 1 67 0 241 316 40 37 chr11 54943215 54943326 -93840146 + MIR SINE MIR 77 148 -60 2291 137 25 0 chr11 54944335 54944694 -93838778 + HERVL LTR ERVL 917 1284 -4370 * 6315 118 11 12 chr11 54944689 54944979 -93838493 + HERVL LTR ERVL 4360 4649 -1005 2094 134 0 10 chr11 54944979 54945284 -93838188 + AluSx SINE Alu 1 302 -10 6315 118 11 12 chr11 54945284 54945932 -93837540 + HERVL LTR ERVL 4649 5297 -357 1193 290 21 16 chr11 54945932 54946318 -93837154 - L1M3b LINE L1 -5883 398 11 342 264 115 60 chr11 54946935 54947117 -93836355 - L1ME LINE L1 -420 5701 5510 27 49 0 0 chr11 54947447 54947488 -93835984 + AT_rich Low_complexity Low_complexity 1 41 0 387 348 0 33 chr11 54948589 54948770 -93834702 + L1ME LINE L1 5497 5671 -450 383 261 76 33 chr11 54949577 54949731 -93833741 + MIR SINE MIR 19 188 -74 27 0 0 0 chr11 54949884 54949911 -93833561 + AT_rich Low_complexity Low_complexity 1 27 0 369 0 0 0 chr11 54953870 54953911 -93829561 + (CA)n Simple_repeat Simple_repeat 2 42 0 2174 119 0 3 chr11 54955020 54955314 -93828158 + AluSx SINE Alu 1 293 -19 213 39 0 0 chr11 54955467 54955493 -93827979 + (TATG)n Simple_repeat Simple_repeat 2 27 0 3822 116 0 7 chr11 54956347 54956917 -93826555 - L1PA15 LINE L1 -2 6163 5598 3796 202 24 49 chr11 54957411 54958405 -93825067 - LTR5 LTR ERVK 0 969 1 1443 89 0 0 chr11 54959904 54960115 -93823357 + L1PA7 LINE L1 5947 6157 0 3686 152 44 21 chr11 54960116 54960841 -93822631 + L1MB1 LINE L1 5383 6124 -44 1290 107 126 73 chr11 54961438 54961699 -93821773 + LTR66 LTR ERVL 336 610 0 1474 104 0 24 chr11 54961699 54961911 -93821561 + HERVL66 LTR ERVL 1 207 -4122 35 41 0 0 chr11 54963197 54963246 -93820226 + AT_rich Low_complexity Low_complexity 1 49 0 1969 115 3 30 chr11 54964541 54964846 -93818626 + AluSq SINE Alu 15 311 -2 682 48 0 0 chr11 54965907 54965991 -93817481 + L1PA10 LINE L1 6072 6155 -13 205 172 31 16 chr11 54965996 54966060 -93817412 + (TA)n Simple_repeat Simple_repeat 1 65 0 297 0 0 0 chr11 54966061 54966094 -93817378 + (TG)n Simple_repeat Simple_repeat 2 34 0 364 256 12 0 chr11 54966100 54966182 -93817290 - MER5B DNA MER1_type -95 83 1 250 315 65 9 chr11 54966398 54966506 -93816966 + L2 LINE L2 2588 2701 -613 846 316 198 20 chr11 54966595 54967295 -93816177 - L2 LINE L2 -2 3311 2484 804 118 15 0 chr11 54969863 54969999 -93813473 - L1PA14 LINE L1 -1 6160 6023 197 159 23 0 chr11 54970301 54970345 -93813127 + (CA)n Simple_repeat Simple_repeat 2 46 0 250 293 12 24 chr11 54972181 54972263 -93811209 + MIR3 SINE MIR 128 208 0 189 0 0 0 chr11 54973567 54973588 -93809884 + (TG)n Simple_repeat Simple_repeat 1 21 0 * 243 0 0 0 chr11 54973587 54973614 -93809858 + (GA)n Simple_repeat Simple_repeat 1 27 0 1983 279 73 50 chr11 54973652 54974547 -93808925 + L2 LINE L2 1711 2625 -689 2524 49 0 0 chr11 54974547 54974852 -93808620 - AluY SINE Alu -6 305 1 192 179 0 0 chr11 54975093 54975132 -93808340 + (CATATA)n Simple_repeat Simple_repeat 3 41 0 249 268 0 0 chr11 54975546 54975602 -93807870 + (TATG)n Simple_repeat Simple_repeat 4 59 0 265 328 30 30 chr11 54976368 54976502 -93806970 - L2 LINE L2 -1 3312 3179 337 362 68 35 chr11 54976528 54976978 -93806494 + L2 LINE L2 2772 3252 -61 405 136 12 37 chr11 54977083 54977164 -93806308 + MADE1 DNA Mariner 2 80 0 928 338 124 23 chr11 54977345 54977914 -93805558 - L2 LINE L2 -1009 2305 1620 600 72 21 31 chr11 54977914 54978011 -93805461 + L1PA5 LINE L1 6056 6151 -3 928 338 124 23 chr11 54978011 54978295 -93805177 - L2 LINE L2 -1694 1620 1366 437 358 28 9 chr11 54978305 54978523 -93804949 - L2 LINE L2 -2127 1187 966 2167 93 0 0 chr11 54978758 54979073 -93804399 - AluSg SINE Alu 0 315 1 2805 0 0 0 chr11 54979571 54979875 -93803597 - AluYa5 SINE Alu -7 304 1 728 321 94 25 chr11 54979877 54980272 -93803200 + LTR16A LTR ERVL 20 441 -9 23 0 0 0 chr11 54981834 54981857 -93801615 + AT_rich Low_complexity Low_complexity 1 23 0 1405 197 7 42 chr11 54982004 54982490 -93800982 + AluJo SINE Alu 1 475 0 2588 50 0 0 chr11 54983175 54983477 -93799995 + AluY SINE Alu 1 302 -9 348 320 120 13 chr11 54984166 54984316 -93799156 - MIR SINE MIR -10 252 87 27 0 0 65 chr11 54984804 54984850 -93798622 + AT_rich Low_complexity Low_complexity 1 43 0 437 318 152 14 chr11 54985789 54986000 -93797472 + MIR SINE MIR 11 250 -12 2074 146 3 0 chr11 54986057 54986366 -93797106 + AluSx SINE Alu 1 310 -2 219 325 146 32 chr11 54987515 54987638 -93795834 - MIR SINE MIR -116 146 10 1395 255 117 60 chr11 54987930 54988648 -93794824 + MER20B DNA MER1_type 16 783 0 2557 70 34 8 chr11 54988817 54989173 -93794299 + L1PA8 LINE L1 5801 6165 -7 640 323 81 65 chr11 54989226 54990271 -93793201 + L1MC4a LINE L1 4260 5321 -825 626 222 11 58 chr11 54990371 54990560 -93792912 - LTR41 LTR ERVL -10 763 584 261 125 14 28 chr11 54990870 54990942 -93792530 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 801 296 132 11 chr11 54990971 54991410 -93792062 + L1MC4a LINE L1 5482 5973 -1835 2290 68 0 3 chr11 54991730 54992024 -93791448 + AluY SINE Alu 1 293 -18 26 0 0 0 chr11 54992024 54992050 -93791422 + AT_rich Low_complexity Low_complexity 1 26 0 1898 250 52 34 chr11 54993463 54994102 -93789370 + L1ME2 LINE L1 5399 6048 -116 652 305 102 0 chr11 54994291 54994662 -93788810 - L1M4 LINE L1 -1198 4948 4540 719 228 5 5 chr11 54994762 54994946 -93788526 + L1M4b LINE L1 787 970 -5889 733 248 16 9 chr11 54994946 54995250 -93788222 + MLT1A2 LTR MaLR 1 373 -1 293 259 0 47 chr11 54995253 54995338 -93788134 + L1M4b LINE L1 970 1050 -5809 36 82 0 0 chr11 54995403 54995488 -93787984 + AT_rich Low_complexity Low_complexity 1 85 0 599 201 14 22 chr11 54995503 54995642 -93787830 + L1M4b LINE L1 1035 1172 -5687 25 0 0 0 chr11 54996293 54996318 -93787154 + AT_rich Low_complexity Low_complexity 1 25 0 5431 185 108 19 chr11 54996441 54997828 -93785644 - L1 LINE L1 -1035 5111 3601 4164 180 50 22 chr11 54997841 54998736 -93784736 + L1MA7 LINE L1 5367 6286 -5 617 172 0 16 chr11 54998748 54998876 -93784596 + A-rich Low_complexity Low_complexity 4 129 0 2712 107 79 0 chr11 54998876 54999305 -93784167 - L1P LINE L1 -1055 5091 4629 3533 68 0 0 chr11 54999311 54999764 -93783708 + L1PA7 LINE L1 5695 6147 -7 310 147 29 0 chr11 54999787 54999855 -93783617 + GA-rich Low_complexity Low_complexity 2 71 0 21 0 0 0 chr11 55000485 55000506 -93782966 + AT_rich Low_complexity Low_complexity 1 21 0 481 349 39 26 chr11 55001542 55001774 -93781698 - MIR SINE MIR -26 236 2 22 0 0 0 chr11 55003059 55003081 -93780391 + AT_rich Low_complexity Low_complexity 1 22 0 641 294 9 23 chr11 55003223 55003441 -93780031 - MIR SINE MIR -1 261 47 202 273 15 0 chr11 55004134 55004200 -93779272 + (TGAA)n Simple_repeat Simple_repeat 1 67 0 255 333 38 23 chr11 55004497 55004629 -93778843 - MIR SINE MIR 0 262 129 2249 244 59 11 chr11 55006261 55006414 -93777058 + LTR65 LTR ERV1 3 147 -522 234 0 0 0 chr11 55006414 55006440 -93777032 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2249 244 59 11 chr11 55006440 55006913 -93776559 + LTR65 LTR ERV1 147 659 -10 49 32 0 0 chr11 55007587 55007650 -93775822 + AT_rich Low_complexity Low_complexity 1 63 0 556 102 20 69 chr11 55008334 55008477 -93774995 - L1MA1 LINE L1 -368 5937 5800 1843 91 0 0 chr11 55008477 55008729 -93774743 + L1MA1 LINE L1 6050 6302 0 28 29 0 0 chr11 55008729 55008764 -93774708 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr11 55009467 55009489 -93773983 + AT_rich Low_complexity Low_complexity 1 22 0 303 333 0 0 chr11 55011547 55011619 -93771853 + L3 LINE CR1 1424 1495 -82 236 154 19 0 chr11 55011619 55011671 -93771801 + (TA)n Simple_repeat Simple_repeat 2 54 0 1152 261 39 39 chr11 55012148 55013027 -93770445 + L1ME1 LINE L1 5195 6161 -5 225 65 0 0 chr11 55013437 55013468 -93770004 + (TATG)n Simple_repeat Simple_repeat 2 32 0 2031 118 0 11 chr11 55013470 55013757 -93769715 - AluSx SINE Alu -28 284 1 239 388 51 10 chr11 55014053 55014249 -93769223 + MIR SINE MIR 55 258 -4 264 363 50 22 chr11 55014677 55014859 -93768613 + MIR3 SINE MIR 21 207 -1 838 192 0 0 chr11 55015550 55015722 -93767750 + L1MA10 LINE L1 6161 6332 -2 1796 102 70 0 chr11 55015894 55016178 -93767294 + L1PA13 LINE L1 5855 6158 -5 24203 43 6 1 chr11 55016377 55020171 -93763301 + L1PA4 LINE L1 2345 6155 0 1587 195 3 11 chr11 55020190 55020472 -93763000 + AluJb SINE Alu 1 280 -32 838 180 0 92 chr11 55020903 55021120 -93762352 + L1 LINE L1 5080 5276 -870 6321 217 20 10 chr11 55021126 55023058 -93760414 + L1M1 LINE L1 16 2643 -4922 1661 160 133 27 chr11 55023058 55023396 -93760076 + MSTA LTR MaLR 55 428 0 7008 185 22 53 chr11 55023396 55025684 -93757788 + L1M1 LINE L1 3143 5358 -2207 7308 44 0 1 chr11 55025684 55026792 -93756680 + L1PA5 LINE L1 5036 6142 -12 594 293 118 40 chr11 55027029 55027428 -93756044 - L2 LINE L2 -2 3311 2882 463 287 38 49 chr11 55027477 55027846 -93755626 + L1M1 LINE L1 5530 5894 -1671 574 149 37 0 chr11 55027853 55027960 -93755512 - L1PB1 LINE L1 -796 5350 5240 * 5376 87 14 38 chr11 55027955 55028797 -93754675 + L1PB1 LINE L1 5358 6179 0 1342 220 53 3 chr11 55028810 55029169 -93754303 + L1M1 LINE L1 5896 6272 -1293 289 216 7 176 chr11 55029181 55029329 -93754143 + FLAM_A SINE Alu 10 132 -1 217 234 21 0 chr11 55029329 55029376 -93754096 + GA-rich Low_complexity Low_complexity 1 48 0 403 172 11 86 chr11 55029388 55029481 -93753991 + FRAM SINE Alu 22 107 -59 251 70 0 23 chr11 55029506 55029549 -93753923 + (TA)n Simple_repeat Simple_repeat 1 42 0 249 33 0 0 chr11 55029558 55029588 -93753884 + (TG)n Simple_repeat Simple_repeat 2 31 0 4100 198 29 13 chr11 55029588 55030790 -93752682 + L1MC1 LINE L1 6267 7488 -264 1012 198 18 9 chr11 55030784 55031001 -93752471 + L1MC1 LINE L1 6009 6227 -106 * 287 177 16 0 chr11 55031061 55031123 -93752349 - L1M4 LINE L1 -891 5255 5193 446 200 10 10 chr11 55031139 55031239 -93752233 + L1MC1 LINE L1 6234 6333 0 1117 268 82 74 chr11 55031239 55031914 -93751558 + L1ME3A LINE L1 5438 6117 -53 469 301 147 0 chr11 55032022 55032185 -93751287 - MER5A DNA MER1_type 0 189 3 287 325 121 19 chr11 55032191 55032348 -93751124 - L2 LINE L2 -518 2796 2624 23 33 0 0 chr11 55033282 55033312 -93750160 + AT_rich Low_complexity Low_complexity 1 30 0 198 0 0 0 chr11 55033848 55033870 -93749602 + (A)n Simple_repeat Simple_repeat 1 22 0 390 266 83 62 chr11 55033908 55034149 -93749323 - HERVL LTR ERVL -1497 4157 3912 295 339 54 18 chr11 55034310 55034531 -93748941 + L1MC4 LINE L1 6790 7018 -1024 207 0 0 0 chr11 55035649 55035672 -93747800 + (TTG)n Simple_repeat Simple_repeat 2 24 0 430 255 48 76 chr11 55036216 55036467 -93747005 - L2 LINE L2 -74 3239 2996 715 192 138 45 chr11 55036489 55036713 -93746759 - MLT1B LTR MaLR -145 245 1 207 239 104 30 chr11 55036715 55036782 -93746690 + MIR SINE MIR 156 227 -35 1848 206 70 74 chr11 55037203 55037770 -93745702 - MER74B LTR ERVL 0 622 58 293 319 151 0 chr11 55038028 55038147 -93745325 - L3 LINE CR1 -1121 456 320 623 279 68 16 chr11 55038503 55038712 -93744760 + MIR SINE MIR 34 252 -10 308 329 89 14 chr11 55038984 55039130 -93744342 + MIR SINE MIR 20 176 -86 347 284 77 38 chr11 55039712 55039895 -93743577 + MIR SINE MIR 70 259 -3 194 283 171 56 chr11 55040183 55040452 -93743020 - L2 LINE L2 -117 3196 2897 1769 284 96 76 chr11 55040525 55041540 -93741932 - L2 LINE L2 -437 2877 1843 23 0 0 0 chr11 55044199 55044222 -93739250 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr11 55044277 55044311 -93739161 + AT_rich Low_complexity Low_complexity 1 34 0 2249 194 2 5 chr11 55044350 55044778 -93738694 - L1MA7 LINE L1 -408 5883 5457 1852 212 7 14 chr11 55044812 55045242 -93738230 + L1MA7 LINE L1 5865 6291 0 288 171 0 0 chr11 55046504 55046557 -93736915 - MLT2C1 LTR ERVL -3 394 351 248 51 0 26 chr11 55046557 55046596 -93736876 + (TG)n Simple_repeat Simple_repeat 2 39 0 313 250 29 73 chr11 55046680 55046816 -93736656 - MLT2D LTR ERVL -116 298 169 5480 214 71 18 chr11 55046852 55051586 -93731886 + L1PBa LINE L1 3 3990 -2872 27101 72 12 4 chr11 55051592 55056107 -93727365 - L1PA6 LINE L1 0 6154 1603 1945 205 22 7 chr11 55056108 55056556 -93726916 + L1 LINE L1 3979 4433 -2429 396 351 33 65 chr11 55057338 55057797 -93725675 - ERVL LTR ERVL -3429 2335 1892 6303 159 58 5 chr11 55057806 55058974 -93724498 + Tigger3b DNA MER2_type 2 1231 0 3217 37 0 0 chr11 55059171 55059577 -93723895 - L1PA3 LINE L1 -743 5403 4998 6577 19 0 1 chr11 55059577 55060331 -93723141 + L1PA3 LINE L1 5400 6155 0 3418 205 22 76 chr11 55060843 55061867 -93721605 + LTR5 LTR ERVK 1 969 0 2056 142 0 3 chr11 55062119 55062414 -93721058 - AluSg SINE Alu -16 294 1 1490 189 46 4 chr11 55062794 55063075 -93720397 - AluJo SINE Alu -19 293 1 591 312 108 42 chr11 55063463 55063580 -93719892 - LTR33 LTR ERVL -19 502 394 2286 194 108 27 chr11 55063580 55064050 -93719422 + MLT2B3 LTR ERVL 3 519 -35 477 34 0 0 chr11 55064050 55064109 -93719363 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 2286 194 108 27 chr11 55064109 55064149 -93719323 + MLT2B3 LTR ERVL 519 554 0 591 312 108 42 chr11 55064149 55064502 -93718970 - LTR33 LTR ERVL -127 394 1 1368 189 63 32 chr11 55064998 55065283 -93718189 - AluJb SINE Alu -15 297 4 24 0 0 0 chr11 55065706 55065730 -93717742 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chr11 55065898 55065921 -93717551 + (TG)n Simple_repeat Simple_repeat 2 24 0 25 65 0 0 chr11 55066208 55066254 -93717218 + AT_rich Low_complexity Low_complexity 1 46 0 1938 118 0 18 chr11 55066260 55066540 -93716932 + AluSx SINE Alu 28 302 -10 49 76 0 0 chr11 55066742 55066847 -93716625 + AT_rich Low_complexity Low_complexity 1 105 0 21495 33 0 1 chr11 55066941 55070317 -93713155 - L1PA2 LINE L1 -2 6153 2772 873 178 71 41 chr11 55070241 55070510 -93712962 - MER65B LTR ERV1 -254 277 1 2550 231 41 7 chr11 55070511 55071127 -93712345 - MER65B-int LTR ERV1 0 4871 4235 2479 239 78 80 chr11 55071126 55072552 -93710920 - MER65B-int LTR ERV1 -740 4131 3281 * 2335 83 0 7 chr11 55072552 55072852 -93710620 - AluSp SINE Alu -15 298 1 2479 239 78 80 chr11 55072852 55073653 -93709819 - MER65B-int LTR ERV1 -1590 3281 2480 629 193 91 37 chr11 55073736 55073923 -93709549 - MER65A-int LTR ERV1 -2869 3729 3533 207 0 0 0 chr11 55073936 55073959 -93709513 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1066 198 40 63 chr11 55074220 55074771 -93708701 - MER65A-int LTR ERV1 -4322 2436 1736 2370 162 59 138 chr11 55074806 55075730 -93707742 - MER65A-int LTR ERV1 -2377 2494 1064 2017 117 0 41 chr11 55075730 55076047 -93707425 + AluSg SINE Alu 2 305 -5 2370 162 59 138 chr11 55076047 55076164 -93707308 - MER65A-int LTR ERV1 -3807 1064 939 538 143 21 203 chr11 55076160 55076397 -93707075 - LTR57-int LTR ERVL -4593 750 557 * 3675 219 49 59 chr11 55076291 55077725 -93705747 - MER65A-int LTR ERV1 -3347 1524 59 1085 180 28 9 chr11 55077781 55077998 -93705474 - MER65A LTR ERV1 0 445 225 212 0 36 0 chr11 55078001 55078029 -93705443 + (TTG)n Simple_repeat Simple_repeat 2 30 0 933 152 30 6 chr11 55078659 55078824 -93704648 - MER65A LTR ERV1 -225 220 52 632 207 0 0 chr11 55078857 55078978 -93704494 - AluJb SINE Alu -191 121 1 213 301 53 44 chr11 55079061 55079174 -93704298 + MER5A DNA MER1_type 2 115 -74 366 254 123 0 chr11 55079212 55079326 -93704146 - MIR SINE MIR -18 244 117 406 221 39 39 chr11 55079752 55079856 -93703616 - L2 LINE L2 0 3313 3210 967 254 52 10 chr11 55080089 55080377 -93703095 - L1MC4 LINE L1 -997 7045 6746 3333 65 0 5 chr11 55080392 55080824 -93702648 - L1PA8 LINE L1 0 6172 5743 634 299 74 34 chr11 55080827 55081517 -93701955 + MER20B DNA MER1_type 48 783 0 360 281 152 0 chr11 55081947 55082125 -93701347 + L2 LINE L2 3094 3298 -15 25 31 0 0 chr11 55083857 55083889 -93699583 + AT_rich Low_complexity Low_complexity 1 32 0 679 183 153 111 chr11 55084039 55084274 -93699198 - LTR42 LTR ERVL -244 251 7 1835 151 49 0 chr11 55086256 55086540 -93696932 - AluSx SINE Alu -14 298 1 700 313 185 24 chr11 55086773 55087027 -93696445 + MLT1H LTR MaLR 71 351 -204 216 402 0 0 chr11 55087139 55087241 -93696231 + MIR SINE MIR 48 149 -113 197 243 68 27 chr11 55087536 55087610 -93695862 + MIR SINE MIR 66 142 -66 1972 147 27 0 chr11 55087685 55087985 -93695487 + AluSx SINE Alu 2 309 -3 2816 10 0 0 chr11 55088197 55088503 -93694969 + AluYa5 SINE Alu 1 306 -5 1338 291 70 65 chr11 55088801 55089368 -93694104 + L2 LINE L2 2321 2909 -404 306 0 0 0 chr11 55089368 55089402 -93694070 + (TTA)n Simple_repeat Simple_repeat 3 36 0 1338 291 70 65 chr11 55089402 55089808 -93693664 + L2 LINE L2 2909 3311 -2 2195 114 0 3 chr11 55089852 55090158 -93693314 - AluSg SINE Alu -5 305 1 867 220 10 2 chr11 55091286 55091596 -93691876 + MLT1B LTR MaLR 5 390 0 24 53 0 0 chr11 55091692 55091730 -93691742 + AT_rich Low_complexity Low_complexity 1 38 0 707 108 0 54 chr11 55092111 55092240 -93691232 - L1PA11 LINE L1 0 6174 6053 1814 89 16 0 chr11 55092240 55092497 -93690975 + L1PA10 LINE L1 5783 6043 -125 23 33 0 0 chr11 55093093 55093123 -93690349 + AT_rich Low_complexity Low_complexity 1 30 0 1697 195 105 32 chr11 55094445 55094912 -93688560 + MLT1D LTR MaLR 1 501 -4 1684 182 0 26 chr11 55096231 55096544 -93686928 - AluSx SINE Alu -7 305 1 294 239 110 14 chr11 55098276 55098357 -93685115 - FLAM SINE Alu -11 122 44 2058 123 0 0 chr11 55098443 55098913 -93684559 + AluSq SINE Alu 1 470 0 249 250 0 50 chr11 55099379 55099439 -93684033 - L2 LINE L2 -17 3255 3199 401 281 31 31 chr11 55099500 55099667 -93683805 + MIR SINE MIR 42 207 -55 210 208 0 0 chr11 55099735 55099783 -93683689 + (TA)n Simple_repeat Simple_repeat 1 48 0 602 224 259 5 chr11 55099789 55099990 -93683482 + LTR50 LTR ERVL 167 418 -377 322 329 0 0 chr11 55100373 55100446 -93683026 - L2 LINE L2 -50 3222 3150 189 308 77 0 chr11 55100492 55100557 -93682915 - MIR SINE MIR -100 108 39 10777 25 1 0 chr11 55100893 55102449 -93681023 - L1PA2 LINE L1 -500 5655 4099 4450 23 0 0 chr11 55102449 55102965 -93680507 + L1PA2 LINE L1 5637 6153 -2 416 337 123 14 chr11 55103374 55103659 -93679813 + MLT1J2 LTR MaLR 8 323 -127 270 191 0 15 chr11 55103923 55103991 -93679481 + L1MC1 LINE L1 6267 6333 0 31 68 0 0 chr11 55104183 55104242 -93679230 + AT_rich Low_complexity Low_complexity 1 59 0 265 320 31 62 chr11 55104544 55104672 -93678800 + L2 LINE L2 3137 3260 -12 285 197 0 0 chr11 55105723 55105794 -93677678 + CT-rich Low_complexity Low_complexity 2 72 0 233 405 47 20 chr11 55105844 55105992 -93677480 + MIR3 SINE MIR 40 191 -17 297 302 238 10 chr11 55106574 55106776 -93676696 + MIR SINE MIR 15 262 0 306 113 32 0 chr11 55106814 55106876 -93676596 - L1MB4 LINE L1 -8 6172 6109 2145 178 35 35 chr11 55106883 55107344 -93676128 - L1MB3 LINE L1 -32 6151 5691 308 230 108 0 chr11 55107433 55107507 -93675965 - L2 LINE L2 -3 3269 3188 354 213 62 6 chr11 55108143 55108263 -93675209 - L1MA9 LINE L1 -25 6275 6156 2118 113 23 0 chr11 55108468 55108768 -93674704 + AluSq SINE Alu 4 310 -3 24 67 0 0 chr11 55108802 55108847 -93674625 + AT_rich Low_complexity Low_complexity 1 45 0 604 276 142 13 chr11 55108970 55109202 -93674270 - MIR SINE MIR 0 262 1 328 255 28 19 chr11 55109228 55109334 -93674138 - MER112 DNA MER1_type -11 249 143 531 226 14 41 chr11 55109334 55109423 -93674049 - MER58B DNA MER1_type -2083 337 252 2267 221 35 2 chr11 55109423 55109902 -93673570 - LTR42 LTR ERVL 0 495 1 531 226 14 41 chr11 55109902 55109958 -93673514 - MER58B DNA MER1_type -2168 252 196 672 234 38 0 chr11 55109979 55110137 -93673335 + MER20 DNA MER1_type 55 218 -1 899 251 26 0 chr11 55110147 55110342 -93673130 - MER58B DNA MER1_type -141 200 1 325 250 81 0 chr11 55110346 55110470 -93673002 - MER112 DNA MER1_type -109 151 18 230 269 76 69 chr11 55112006 55112151 -93671321 + MER103 DNA DNA 2 147 -19 4153 70 28 9 chr11 55113093 55113666 -93669806 - L1PB1 LINE L1 -3 6148 5565 278 232 0 43 chr11 55115482 55115551 -93667921 - MIR SINE MIR -59 203 138 356 333 16 8 chr11 55115610 55115736 -93667736 + L2 LINE L2 3187 3313 0 220 214 36 18 chr11 55115991 55116047 -93667425 + MIR3 SINE MIR 148 204 -4 23 33 0 0 chr11 55117130 55117160 -93666312 + AT_rich Low_complexity Low_complexity 1 30 0 269 310 120 10 chr11 55118618 55118718 -93664754 - MIR SINE MIR -71 137 27 396 234 51 58 chr11 55118918 55119055 -93664417 + MIR SINE MIR 126 261 -1 313 381 70 13 chr11 55119772 55120145 -93663327 - L3 LINE CR1 -369 1208 815 2081 122 6 13 chr11 55121732 55122043 -93661429 - AluSx SINE Alu -1 311 3 1287 107 15 49 chr11 55122248 55122453 -93661019 + AluSg/x SINE Alu 104 301 -11 2002 134 56 36 chr11 55123102 55123459 -93660013 - THE1B LTR MaLR 0 364 1 280 360 8 0 chr11 55124566 55124691 -93658781 + HAL1 LINE L1 744 869 -1638 * 1662 92 0 0 chr11 55124685 55124914 -93658558 + L1P3 LINE L1 8 236 -6225 292 375 8 16 chr11 55124926 55125054 -93658418 + MIR SINE MIR 19 145 -63 26 0 0 0 chr11 55125075 55125101 -93658371 + AT_rich Low_complexity Low_complexity 1 26 0 26 82 0 0 chr11 55125979 55126040 -93657432 + AT_rich Low_complexity Low_complexity 1 61 0 285 262 0 0 chr11 55126431 55126492 -93656980 - L2 LINE L2 -9 3263 3203 244 277 85 0 chr11 55126675 55126769 -93656703 - MIR SINE MIR -36 226 125 2770 177 14 148 chr11 55126908 55127489 -93655983 - MLT2B3 LTR ERVL -12 508 1 435 277 19 39 chr11 55128065 55128220 -93655252 - MLT1J LTR MaLR -2 509 358 613 284 73 13 chr11 55128248 55128480 -93654992 - MLT1J LTR MaLR -234 277 32 231 424 0 0 chr11 55128594 55128679 -93654793 + MIR SINE MIR 9 93 -169 319 343 0 9 chr11 55128831 55128939 -93654533 + L2 LINE L2 3203 3309 -4 22 0 0 0 chr11 55128982 55129004 -93654468 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr11 55130548 55130572 -93652900 + AT_rich Low_complexity Low_complexity 1 24 0 7518 31 0 0 chr11 55131061 55132330 -93651142 - L1PA4 LINE L1 0 6155 4885 1232 292 93 82 chr11 55133314 55134215 -93649257 + L1M4 LINE L1 3674 4595 -1551 2465 232 42 6 chr11 55134215 55134861 -93648611 + LTR65 LTR ERV1 1 669 0 1232 292 93 82 chr11 55134861 55135260 -93648212 + L1M4 LINE L1 4595 4988 -1158 6808 38 0 0 chr11 55135392 55136208 -93647264 - L1PA5 LINE L1 -9 6145 5330 3148 43 0 0 chr11 55136201 55136593 -93646879 + L1P LINE L1 4895 5286 -860 * 1060 231 43 35 chr11 55136582 55136950 -93646522 - L1 LINE L1 -3057 3089 2719 * 3855 145 15 9 chr11 55136947 55137616 -93645856 + L1MA4 LINE L1 5269 5941 -359 463 54 0 54 chr11 55137635 55137728 -93645744 + (TA)n Simple_repeat Simple_repeat 2 89 0 2425 97 0 14 chr11 55137729 55138091 -93645381 + L1PB1 LINE L1 5794 6150 -1 2382 180 28 2 chr11 55138236 55138664 -93644808 - Tigger2 DNA MER2_type 0 2718 2280 340 229 0 0 chr11 55138661 55138731 -93644741 + MER8 DNA MER2_type 170 239 0 * 5266 141 24 16 chr11 55141224 55141903 -93641569 - L1PA16 LINE L1 0 6166 5476 1410 192 36 36 chr11 55141903 55142205 -93641267 - AluJb SINE Alu -10 302 1 5266 141 24 16 chr11 55142205 55142543 -93640929 - L1PA16 LINE L1 -690 5476 5142 2241 115 0 0 chr11 55142649 55142954 -93640518 + AluSq SINE Alu 1 305 -8 21 36 0 0 chr11 55143044 55143072 -93640400 + AT_rich Low_complexity Low_complexity 1 28 0 228 267 67 0 chr11 55143882 55143957 -93639515 - L2 LINE L2 -5 3308 3229 855 158 0 0 chr11 55145410 55145543 -93637929 + AluSq/x SINE Alu 1 133 -179 2282 209 38 10 chr11 55145881 55146388 -93637084 + L1MD2 LINE L1 5634 6154 -205 423 262 35 14 chr11 55146395 55146540 -93636932 + L1MD2 LINE L1 6199 6346 -13 181 242 48 16 chr11 55148556 55148618 -93634854 - MIR SINE MIR -15 247 184 6912 35 3 5 chr11 55148622 55149474 -93633998 + L1PA4 LINE L1 5303 6153 -2 561 354 128 26 chr11 55149491 55149921 -93633551 + L2 LINE L2 2840 3313 0 1118 216 26 57 chr11 55150017 55150402 -93633070 + L1 LINE L1 4960 5332 -814 4442 183 44 10 chr11 55150532 55151727 -93631745 + L1PBb LINE L1 913 2208 -3996 2080 108 0 7 chr11 55151727 55152013 -93631459 + AluSc SINE Alu 1 284 -25 306 125 0 0 chr11 55152013 55152061 -93631411 + (TA)n Simple_repeat Simple_repeat 1 48 0 262 135 0 58 chr11 55152071 55152123 -93631349 + L1PBb LINE L1 2238 2286 -3918 1692 298 107 64 chr11 55152414 55153712 -93629760 - L2 LINE L2 -117 3196 1843 27 49 0 0 chr11 55154082 55154123 -93629349 + AT_rich Low_complexity Low_complexity 1 41 0 23 0 0 0 chr11 55156354 55156377 -93627095 + AT_rich Low_complexity Low_complexity 1 23 0 28 29 0 0 chr11 55156432 55156467 -93627005 + AT_rich Low_complexity Low_complexity 1 35 0 2269 194 2 5 chr11 55156506 55156934 -93626538 - L1MA7 LINE L1 -408 5883 5457 1854 212 7 14 chr11 55156968 55157398 -93626074 + L1MA7 LINE L1 5865 6291 0 277 216 0 0 chr11 55158656 55158707 -93624765 - MLT2D LTR ERVL 0 414 364 270 81 0 0 chr11 55158764 55158801 -93624671 + (TG)n Simple_repeat Simple_repeat 2 38 0 308 274 30 74 chr11 55158898 55159033 -93624439 - MLT2D LTR ERVL -117 297 169 2716 309 40 26 chr11 55159093 55160521 -93622951 + L1PBa LINE L1 -632 815 -5389 5981 177 35 13 chr11 55160578 55161954 -93621518 + L1MA7 LINE L1 1 1251 -4953 3282 194 55 10 chr11 55162199 55162910 -93620562 + L1MA7 LINE L1 5344 6086 -262 531 272 50 54 chr11 55163426 55163665 -93619807 + L1MC4 LINE L1 7762 7999 -43 5243 153 14 25 chr11 55163987 55165023 -93618449 - L1PA15 LINE L1 -1 6164 5121 376 80 0 0 chr11 55165044 55165094 -93618378 + U2 snRNA snRNA 6 55 -133 3568 212 17 4 chr11 55165102 55165943 -93617529 - L1 LINE L1 -1034 5112 4261 400 328 98 62 chr11 55168079 55168417 -93615055 + LTR16C LTR ERVL 1 350 -141 466 213 35 92 chr11 55168574 55168715 -93614757 + LTR16C LTR ERVL 357 489 -2 800 332 58 51 chr11 55169230 55170019 -93613453 + HERV16 LTR ERVL 521 1315 -3681 963 339 67 19 chr11 55170090 55170953 -93612519 + HERV16 LTR ERVL 2299 3253 -2511 6940 122 4 17 chr11 55170954 55171667 -93611805 + HSMAR1 DNA Mariner 37 758 -529 3461 104 66 7 chr11 55171667 55172215 -93611257 + LTR19B LTR ERV1 1 580 0 6940 122 4 17 chr11 55172215 55172596 -93610876 + HSMAR1 DNA Mariner 758 1120 -167 2023 136 0 7 chr11 55172596 55172890 -93610582 - AluSc SINE Alu -17 292 1 6940 122 4 17 chr11 55172890 55173056 -93610416 + HSMAR1 DNA Mariner 1120 1287 0 228 234 96 53 chr11 55173058 55173246 -93610226 - L1 LINE L1 -762 5384 5189 960 167 0 0 chr11 55174801 55174951 -93608521 + FRAM SINE Alu 11 160 -16 7118 24 0 0 chr11 55175089 55175916 -93607556 + L1PA4 LINE L1 5326 6152 -3 26 64 0 0 chr11 55175916 55175963 -93607509 + AT_rich Low_complexity Low_complexity 1 47 0 216 86 0 0 chr11 55175986 55176021 -93607451 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1039 146 28 0 chr11 55177276 55177489 -93605983 - L1MA8 LINE L1 0 6291 6073 348 111 0 0 chr11 55178049 55178103 -93605369 + (TG)n Simple_repeat Simple_repeat 1 54 0 6313 190 54 11 chr11 55178315 55179566 -93603906 - MSTA-int LTR MaLR -346 1305 1 1461 194 98 49 chr11 55179566 55179974 -93603498 - MSTA LTR MaLR 0 428 1 13308 223 27 23 chr11 55179987 55181109 -93602363 + L1PA16 LINE L1 1960 3076 -3793 5232 158 29 40 chr11 55181109 55182192 -93601280 - MER11C LTR ERVK 0 1071 1 13308 223 27 23 chr11 55182192 55185848 -93597624 + L1PA16 LINE L1 3076 6760 -109 1598 209 91 20 chr11 55185848 55186246 -93597226 - MSTB LTR MaLR 0 426 1 13308 223 27 23 chr11 55186246 55186341 -93597131 + L1PA16 LINE L1 6760 6853 -16 276 366 98 7 chr11 55186458 55186611 -93596861 + LTR16C LTR ERVL 37 203 -288 2390 272 28 16 chr11 55186617 55187616 -93595856 + L1MEc LINE L1 2149 3119 -3096 276 253 77 0 chr11 55187593 55187684 -93595788 + L1MEc LINE L1 3674 3771 -2444 * 8532 178 28 17 chr11 55188003 55189973 -93593499 - L1MA9 LINE L1 -22 6290 4197 3644 51 26 0 chr11 55189973 55190440 -93593032 - L1PA4 LINE L1 0 6155 5677 8532 178 28 17 chr11 55190440 55191044 -93592428 - L1MA9 LINE L1 -2115 4197 3602 1012 324 31 50 chr11 55191258 55191832 -93591640 + HERVL LTR ERVL 3843 4405 -1249 2397 138 14 0 chr11 55191832 55192202 -93591270 - THE1C LTR MaLR 0 375 1 6534 145 4 5 chr11 55192202 55193187 -93590285 - THE1C-int LTR MaLR 0 1580 597 357 82 0 0 chr11 55193347 55193396 -93590076 + (A)n Simple_repeat Simple_repeat 1 49 0 278 305 110 0 chr11 55193540 55193658 -93589814 - MIR3 SINE MIR -17 191 61 186 224 184 0 chr11 55193673 55193749 -93589723 + MIR SINE MIR 163 252 -10 347 133 85 188 chr11 55194216 55194311 -93589161 - L1MA10 LINE L1 -2 6332 6238 829 204 44 51 chr11 55194311 55194609 -93588863 - L1ME1 LINE L1 -68 6098 5810 455 243 11 95 chr11 55195242 55195431 -93588041 - MLT1K LTR MaLR -57 531 359 330 67 0 0 chr11 55195904 55195949 -93587523 + (CA)n Simple_repeat Simple_repeat 2 46 0 686 254 71 31 chr11 55195960 55196342 -93587130 - L1ME4a LINE L1 -162 5959 5563 24 77 0 0 chr11 55196846 55196898 -93586574 + AT_rich Low_complexity Low_complexity 1 52 0 219 361 121 18 chr11 55197624 55197790 -93585682 - MIR SINE MIR -19 243 61 3091 208 31 56 chr11 55198234 55199096 -93584376 + L1MD2 LINE L1 5517 6357 -2 512 274 45 63 chr11 55199299 55199522 -93583950 - MER20 DNA MER1_type 0 219 1 429 272 110 0 chr11 55200107 55200243 -93583229 - MIR3 SINE MIR -21 187 37 644 313 48 13 chr11 55200303 55200533 -93582939 + MIR SINE MIR 5 242 -20 284 277 101 17 chr11 55200655 55200774 -93582698 - MIR3 SINE MIR -67 141 13 721 298 57 27 chr11 55201552 55201884 -93581588 - L2 LINE L2 -422 2892 2551 5097 108 8 7 chr11 55202227 55202962 -93580510 - LTR17 LTR ERV1 0 780 1 210 214 86 43 chr11 55203002 55203072 -93580400 + L2 LINE L2 3169 3241 -31 3935 123 3 10 chr11 55203741 55204343 -93579129 - MER4A LTR ERV1 -2 598 1 12407 106 32 27 chr11 55204355 55205596 -93577876 - MER4A-int LTR ERV1 -2 6596 5339 1956 176 0 3 chr11 55205596 55205909 -93577563 - AluSx SINE Alu 0 312 1 12407 106 32 27 chr11 55205909 55206746 -93576726 - MER4A-int LTR ERV1 -1259 5339 4508 2624 129 23 33 chr11 55206760 55207242 -93576230 - MER4A-int LTR ERV1 -2307 4291 3815 * 3952 133 77 30 chr11 55207239 55208889 -93574583 - MER4A-int LTR ERV1 -2922 3676 1458 3984 130 49 18 chr11 55208892 55209805 -93573667 - MER4A-int LTR ERV1 -5560 1198 194 879 238 87 0 chr11 55209842 55210048 -93573424 - MER4A-int LTR ERV1 -4131 2200 1977 727 109 45 18 chr11 55210048 55210158 -93573314 - THE1B LTR MaLR -251 113 1 2910 91 8 0 chr11 55210158 55210552 -93572920 - THE1B-int LTR MaLR 0 1580 1184 2167 114 60 15 chr11 55210552 55210886 -93572586 + LTR8 LTR ERV1 343 691 0 657 131 10 0 chr11 55210886 55210985 -93572487 - MER4A-int LTR ERV1 -6498 100 1 4201 101 7 2 chr11 55210988 55211585 -93571887 - MER4A LTR ERV1 0 600 1 191 190 17 0 chr11 55211707 55211765 -93571707 + (TAA)n Simple_repeat Simple_repeat 2 60 0 278 267 105 0 chr11 55211849 55211935 -93571537 - MIR SINE MIR -109 153 59 254 362 141 51 chr11 55212125 55212302 -93571170 + L2 LINE L2 3078 3270 -2 227 324 157 0 chr11 55212808 55212910 -93570562 + L2 LINE L2 3196 3313 0 472 241 15 38 chr11 55213100 55213233 -93570239 - MER5A DNA MER1_type -24 165 36 208 263 113 12 chr11 55213832 55213912 -93569560 + MIR SINE MIR 48 135 -73 201 353 121 9 chr11 55215391 55215507 -93567965 - MIR SINE MIR -114 148 20 182 385 66 33 chr11 55215684 55215806 -93567666 - L2 LINE L2 -9 3304 3179 300 111 0 0 chr11 55216224 55216269 -93567203 + (TTCC)n Simple_repeat Simple_repeat 4 48 0 2067 130 13 0 chr11 55216282 55216581 -93566891 - AluSp SINE Alu -8 305 3 233 307 17 45 chr11 55216638 55216814 -93566658 - L2 LINE L2 -595 2719 2549 2231 128 0 10 chr11 55216890 55217203 -93566269 - AluSx SINE Alu -2 310 1 313 313 38 15 chr11 55217473 55217604 -93565868 + MIR SINE MIR 20 153 -55 568 165 0 0 chr11 55218121 55218212 -93565260 + MER69 DNA AcHobo 45 135 -1091 1278 168 26 4 chr11 55218357 55218583 -93564889 + AluJb SINE Alu 1 231 -81 255 61 0 0 chr11 55218604 55218637 -93564835 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 842 279 188 34 chr11 55218650 55219245 -93564227 + L1MC4a LINE L1 5421 6107 -1701 228 405 0 0 chr11 55219308 55219397 -93564075 + MIR SINE MIR 58 146 -62 218 347 13 0 chr11 55219417 55219492 -93563980 + L2 LINE L2 2890 2965 -307 198 71 0 0 chr11 55220308 55220336 -93563136 + (CA)n Simple_repeat Simple_repeat 1 28 0 25 51 0 0 chr11 55220551 55220590 -93562882 + AT_rich Low_complexity Low_complexity 1 39 0 300 53 0 0 chr11 55220602 55220640 -93562832 + (TG)n Simple_repeat Simple_repeat 2 39 0 750 160 13 6 chr11 55221378 55221534 -93561938 + CT-rich Low_complexity Low_complexity 3 159 0 229 146 0 42 chr11 55221535 55221583 -93561889 + (TTCTC)n Simple_repeat Simple_repeat 5 50 0 315 143 0 20 chr11 55221584 55221633 -93561839 - AluJb SINE Alu -179 123 76 192 176 98 118 chr11 55221640 55221742 -93561730 - MIR SINE MIR -56 206 107 2166 262 84 64 chr11 55223093 55224230 -93559242 - L2 LINE L2 -12 3301 2131 334 274 18 26 chr11 55224240 55224353 -93559119 + L2 LINE L2 2273 2384 -930 765 336 20 0 chr11 55224400 55224644 -93558828 - MIR SINE MIR -13 249 1 1881 157 58 3 chr11 55225101 55225426 -93558046 - MER61A LTR ERV1 0 343 1 620 253 144 26 chr11 55225517 55225822 -93557650 - L1MC4a LINE L1 -1876 5932 5592 * 2239 204 43 33 chr11 55225817 55226399 -93557073 - L1MA10 LINE L1 -1 6333 5746 869 222 49 30 chr11 55226416 55226682 -93556790 - L1MC4a LINE L1 -2202 5606 5336 32 26 0 0 chr11 55226803 55226842 -93556630 + AT_rich Low_complexity Low_complexity 1 39 0 4239 112 63 105 chr11 55229993 55231483 -93551989 - pTR5 LTR ERV1 0 2606 1524 198 328 123 41 chr11 55232862 55232984 -93550488 + L2 LINE L2 3141 3272 0 368 313 55 16 chr11 55233403 55233531 -93549941 + MIR3 SINE MIR 64 196 -12 340 281 26 18 chr11 55235184 55235298 -93548174 + MIR SINE MIR 26 140 -68 22 56 0 0 chr11 55235326 55235362 -93548110 + AT_rich Low_complexity Low_complexity 1 36 0 247 256 183 0 chr11 55235394 55235476 -93547996 - MIR SINE MIR -112 150 54 338 358 27 7 chr11 55235552 55235700 -93547772 - MIR SINE MIR 0 262 112 405 325 42 17 chr11 55236157 55236438 -93547034 - HERVL LTR ERVL -1035 4729 4402 1500 142 60 0 chr11 55236439 55236736 -93546736 + THE1C LTR MaLR 1 364 0 2667 89 133 0 chr11 55236736 55237165 -93546307 + THE1C-int LTR MaLR 1 486 -1094 2365 73 3 26 chr11 55237299 55237612 -93545860 - AluY SINE Alu -5 306 1 184 343 71 36 chr11 55237785 55237925 -93545547 + L3b LINE CR1 1331 1475 -108 284 296 122 68 chr11 55237985 55238482 -93544990 - L2 LINE L2 -92 3180 2680 1004 188 9 0 chr11 55238941 55239154 -93544318 + L1 LINE L1 3319 3533 -2613 21 36 0 0 chr11 55239177 55239205 -93544267 + AT_rich Low_complexity Low_complexity 1 28 0 648 110 11 0 chr11 55239250 55239341 -93544131 - FLAM_C SINE Alu -38 105 14 273 340 27 130 chr11 55241425 55241763 -93541709 - L2 LINE L2 -37 3235 2933 189 0 0 0 chr11 55241899 55241920 -93541552 + (CAGAT)n Simple_repeat Simple_repeat 3 23 0 203 281 22 45 chr11 55242349 55242438 -93541034 + L2 LINE L2 3184 3270 -2 180 158 0 0 chr11 55242974 55243012 -93540460 + (TCTCTG)n Simple_repeat Simple_repeat 5 42 0 2803 68 6 0 chr11 55243016 55243369 -93540103 + THE1A LTR MaLR 1 355 0 2065 79 7 0 chr11 55243369 55243659 -93539813 + THE1A-int LTR MaLR 1 292 -1288 200 261 227 0 chr11 55243761 55243849 -93539623 + MIR SINE MIR 36 143 -65 1036 64 40 12 chr11 55244287 55244460 -93539012 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 831 202 133 12 chr11 55244804 55245052 -93538420 + LTR8A LTR ERV1 287 564 -163 487 139 25 0 chr11 55245055 55245134 -93538338 + THE1C LTR MaLR 1 81 -294 561 276 21 44 chr11 55245635 55245823 -93537649 + MIR SINE MIR 53 235 -27 1614 129 0 0 chr11 55246713 55246969 -93536503 - L1PA15 LINE L1 -206 5959 5704 489 111 0 0 chr11 55246969 55247050 -93536422 + L1PA15 LINE L1 6085 6165 0 319 259 70 70 chr11 55247097 55247228 -93536244 - L1ME4a LINE L1 -161 5960 5827 11240 90 25 23 chr11 55247228 55249727 -93533745 - L1PA7 LINE L1 -2 6152 3649 319 259 70 70 chr11 55249727 55249796 -93533676 - L1ME4a LINE L1 -293 5828 5760 22 0 0 0 chr11 55249798 55249820 -93533652 + AT_rich Low_complexity Low_complexity 1 22 0 465 158 0 0 chr11 55250268 55250344 -93533128 + MER31B LTR ERV1 1 76 -390 1749 247 58 48 chr11 55250349 55251002 -93532470 + MER67B LTR ERV1 2 661 0 1569 50 30 0 chr11 55251293 55251529 -93531943 + L1PA4 LINE L1 5939 6180 0 919 210 58 10 chr11 55251740 55251945 -93531527 - MER20 DNA MER1_type -4 215 1 270 176 0 0 chr11 55252804 55252855 -93530617 + (TG)n Simple_repeat Simple_repeat 2 52 0 29 70 0 0 chr11 55253363 55253420 -93530052 + AT_rich Low_complexity Low_complexity 1 57 0 229 244 0 0 chr11 55253534 55253579 -93529893 + L2 LINE L2 3227 3271 -1 7656 19 0 0 chr11 55254793 55256126 -93527346 - L1PA2 LINE L1 0 6155 4816 7657 21 2 0 chr11 55256126 55257064 -93526408 + L1PA2 LINE L1 3892 4831 -1315 181 234 168 88 chr11 55257409 55257517 -93525955 + L3 LINE CR1 1399 1546 -31 182 103 0 0 chr11 55257517 55257546 -93525926 + MIR3 SINE MIR 145 173 -35 281 330 71 22 chr11 55258506 55258688 -93524784 + MIR SINE MIR 21 211 -51 1156 161 144 34 chr11 55258802 55259094 -93524378 + MER33 DNA MER1_type 1 324 0 294 29 0 0 chr11 55259407 55259469 -93524003 + (TG)n Simple_repeat Simple_repeat 1 97 0 294 29 0 0 chr11 55259469 55259504 -93523968 + (TG)n Simple_repeat Simple_repeat 2 36 0 1487 134 14 29 chr11 55259623 55259683 -93523789 + L1MA6 LINE L1 6029 6088 -212 3680 121 11 2 chr11 55259683 55260205 -93523267 + MER1A DNA MER1_type 1 527 0 1487 134 14 29 chr11 55260205 55260420 -93523052 + L1MA6 LINE L1 6088 6300 0 245 392 13 51 chr11 55260487 55260645 -93522827 - L2 LINE L2 0 3272 3121 1336 93 10 5 chr11 55261045 55261239 -93522233 + L1PA6 LINE L1 5959 6153 -1 311 235 265 20 chr11 55261243 55261341 -93522131 + MIR SINE MIR 22 143 -119 671 286 21 14 chr11 55262688 55262904 -93520568 - MIR SINE MIR 0 262 47 474 296 31 38 chr11 55262911 55263070 -93520402 + MER5B DNA MER1_type 21 178 0 185 312 64 18 chr11 55263110 55263219 -93520253 + MIR SINE MIR 70 183 -79 361 317 88 1 chr11 55263573 55263743 -93519729 - MIR3 SINE MIR -1 207 17 198 0 0 0 chr11 55263759 55263781 -93519691 + (TTTC)n Simple_repeat Simple_repeat 1 22 0 306 250 71 64 chr11 55263781 55263921 -93519551 - L2 LINE L2 0 3272 3132 558 285 127 9 chr11 55264796 55265024 -93518448 + MIR SINE MIR 2 256 -6 218 211 0 70 chr11 55265371 55265428 -93518044 - L2 LINE L2 0 3272 3220 345 329 67 20 chr11 55265627 55265776 -93517696 - MIR SINE MIR -12 250 95 31 82 0 0 chr11 55266168 55266241 -93517231 + AT_rich Low_complexity Low_complexity 1 73 0 22 35 0 0 chr11 55267119 55267148 -93516324 + AT_rich Low_complexity Low_complexity 1 29 0 239 299 73 44 chr11 55267173 55267310 -93516162 - MIR3 SINE MIR -44 164 24 727 274 10 37 chr11 55267594 55267842 -93515630 - MIR SINE MIR -1 261 27 192 355 73 16 chr11 55267864 55267988 -93515484 + MIR SINE MIR 22 152 -110 232 354 9 18 chr11 55268251 55268364 -93515108 + MIR SINE MIR 30 141 -67 219 374 9 26 chr11 55268389 55268504 -93514968 - L2 LINE L2 -2 3311 3199 590 299 30 45 chr11 55269929 55270130 -93513342 + MIR SINE MIR 11 208 -54 358 306 161 11 chr11 55271232 55271412 -93512060 - MIR SINE MIR -9 253 47 400 371 92 62 chr11 55271616 55271890 -93511582 + L2 LINE L2 2825 3118 -154 813 95 0 0 chr11 55271890 55272006 -93511466 + (CTATG)n Simple_repeat Simple_repeat 4 119 0 400 371 92 62 chr11 55272006 55272165 -93511307 + L2 LINE L2 3118 3271 -1 598 317 49 0 chr11 55272625 55272789 -93510683 + MER91A DNA MER1_type 20 191 -5 186 118 0 0 chr11 55272865 55272899 -93510573 + (TTCA)n Simple_repeat Simple_repeat 2 35 0 199 216 0 0 chr11 55272918 55272955 -93510517 + MIR SINE MIR 8 44 -218 278 314 42 17 chr11 55273386 55273504 -93509968 - L3 LINE CR1 -95 1482 1362 283 185 49 12 chr11 55274202 55274283 -93509189 + CT-rich Low_complexity Low_complexity 2 85 0 459 290 228 33 chr11 55274500 55274834 -93508638 - L3 LINE CR1 -260 1317 919 1706 188 10 3 chr11 55274873 55275165 -93508307 + AluJo SINE Alu 1 294 -18 358 325 136 0 chr11 55275510 55275679 -93507793 - MIR SINE MIR -18 244 53 430 318 74 11 chr11 55276140 55276349 -93507123 - MIR SINE MIR -1 261 31 308 342 27 0 chr11 55277309 55277420 -93506052 + MIR SINE MIR 46 159 -103 21 71 0 0 chr11 55277494 55277536 -93505936 + AT_rich Low_complexity Low_complexity 1 42 0 207 374 88 11 chr11 55277552 55277643 -93505829 + MIR SINE MIR 29 126 -136 202 150 25 0 chr11 55277747 55277787 -93505685 + A-rich Low_complexity Low_complexity 1 41 0 2904 83 17 5 chr11 55278975 55279397 -93504075 + L1MA1 LINE L1 5873 6299 -3 417 289 57 36 chr11 55279576 55279770 -93503702 - MIR SINE MIR -57 205 8 520 280 127 56 chr11 55279906 55280356 -93503116 + L1ME4a LINE L1 5629 6110 -11 262 287 165 9 chr11 55280396 55280511 -93502961 + MIR SINE MIR 20 152 -110 878 199 126 66 chr11 55280800 55281117 -93502355 + MLT1A1 LTR MaLR 1 336 -29 603 264 15 46 chr11 55282035 55282232 -93501240 + MIR SINE MIR 36 226 -36 354 315 0 31 chr11 55282892 55283022 -93500450 + MIR SINE MIR 79 204 -58 315 141 16 0 chr11 55283059 55283123 -93500349 - MADE1 DNA Mariner -15 65 1 338 213 191 21 chr11 55283885 55283979 -93499493 + L2 LINE L2 3204 3313 0 188 344 64 40 chr11 55284121 55284246 -93499226 - MIR SINE MIR -56 206 79 207 203 31 47 chr11 55284711 55284775 -93498697 + (TCCA)n Simple_repeat Simple_repeat 2 64 0 288 237 0 0 chr11 55284775 55284851 -93498621 - L1MC4 LINE L1 -139 7903 7828 352 295 90 0 chr11 55284907 55285029 -93498443 - L1MC/D LINE L1 -2152 5656 5524 2366 94 7 0 chr11 55285545 55285877 -93497595 + AluSc SINE Alu 1 334 0 891 0 0 0 chr11 55285977 55286081 -93497391 - L1PA3 LINE L1 -295 5860 5757 661 45 0 0 chr11 55286080 55286168 -93497304 + L1P LINE L1 3131 3218 -2928 * 264 328 41 16 chr11 55286430 55286552 -93496920 + L2 LINE L2 3188 3312 -1 1978 137 0 0 chr11 55286747 55287074 -93496398 - AluSx SINE Alu 0 327 1 20679 39 2 0 chr11 55287087 55290408 -93493064 - L1PA4 LINE L1 -3 6152 2827 7668 24 0 0 chr11 55290403 55291484 -93491988 - L1PA2 LINE L1 0 6155 5076 * 19447 61 51 3 chr11 55291488 55294195 -93489277 - L1PA4 LINE L1 -3309 2837 1 17294 69 2 0 chr11 55294196 55296561 -93486911 - L1P LINE L1 -3305 2841 473 987 141 6 0 chr11 55296561 55296724 -93486748 - L1P LINE L1 -5972 174 11 669 22 0 0 chr11 55296735 55296826 -93486646 - L1P LINE L1 -3706 2440 2350 271 256 22 33 chr11 55296994 55297084 -93486388 + MLT1L LTR MaLR 7 95 -520 834 253 21 94 chr11 55297214 55297554 -93485918 + MER77 LTR ERV1 54 368 -237 1719 153 17 13 chr11 55297592 55297893 -93485579 + LTR57 LTR ERVL 5 306 -105 386 321 45 18 chr11 55299341 55299562 -93483910 + BaEV-int LTR ERV1 966 1192 -5457 583 292 48 39 chr11 55299597 55300036 -93483436 + BaEV-int LTR ERV1 1296 1738 -4911 2000 170 46 2 chr11 55300323 55300706 -93482766 + L1MA9 LINE L1 5391 5795 -517 297 0 0 0 chr11 55300706 55300739 -93482733 + (CA)n Simple_repeat Simple_repeat 2 34 0 2000 170 46 2 chr11 55300739 55300772 -93482700 + L1MA9 LINE L1 5795 5825 -487 * 4783 153 64 17 chr11 55300760 55301105 -93482367 + L1PA16 LINE L1 4698 5025 -1141 2698 26 0 10 chr11 55301105 55301417 -93482055 + AluYb8 SINE Alu 7 315 -3 4783 153 64 17 chr11 55301417 55302471 -93481001 + L1PA16 LINE L1 5025 6164 -2 220 214 0 0 chr11 55302472 55302514 -93480958 + (TATG)n Simple_repeat Simple_repeat 3 44 0 1430 176 53 51 chr11 55302514 55302754 -93480718 - THE1C LTR MaLR 0 375 132 2231 110 48 25 chr11 55302754 55303110 -93480362 - THE1B LTR MaLR 0 364 1 1430 176 53 51 chr11 55303110 55303243 -93480229 - THE1C LTR MaLR -243 132 1 22 0 0 0 chr11 55303459 55303481 -93479991 + AT_rich Low_complexity Low_complexity 1 22 0 398 249 140 56 chr11 55303538 55303892 -93479580 + L1ME LINE L1 5439 5819 -302 193 209 30 0 chr11 55304215 55304282 -93479190 + GA-rich Low_complexity Low_complexity 3 71 0 200 211 0 0 chr11 55304783 55304821 -93478651 + (CAAT)n Simple_repeat Simple_repeat 2 39 0 6346 244 74 30 chr11 55304971 55308667 -93474805 - L1MD2 LINE L1 -13 6346 2814 1079 44 0 0 chr11 55308667 55308802 -93474670 - L1PA2 LINE L1 0 6155 6021 2355 76 0 3 chr11 55308802 55309105 -93474367 - AluY SINE Alu -9 302 1 6346 244 74 30 chr11 55309105 55309365 -93474107 - L1MD2 LINE L1 -3544 2815 2171 796 205 150 0 chr11 55309369 55309603 -93473869 + L1MDa LINE L1 2028 2296 -4244 1218 106 53 10 chr11 55309619 55309827 -93473645 - Tigger1 DNA MER2_type 0 2418 2202 560 190 113 21 chr11 55309816 55309958 -93473514 - Tigger1 DNA MER2_type -2261 157 3 * 588 190 30 68 chr11 55309959 55310196 -93473276 + L1MDa LINE L1 2329 2556 -3984 6541 149 13 8 chr11 55310472 55312416 -93471056 - L1PA11 LINE L1 -3 7609 5648 * 8880 47 0 0 chr11 55312413 55314357 -93469115 + L1PA2 LINE L1 4215 6152 -3 6264 238 24 44 chr11 55314359 55314931 -93468541 - L1PA11 LINE L1 -3666 3918 3336 1771 189 0 0 chr11 55314931 55315233 -93468239 + AluSx SINE Alu 1 302 -10 6264 238 24 44 chr11 55315233 55317540 -93465932 - L1PA11 LINE L1 -4248 3336 11 21 0 0 0 chr11 55318906 55318927 -93464545 + AT_rich Low_complexity Low_complexity 1 21 0 7578 230 31 13 chr11 55320086 55322175 -93461297 + L1P LINE L1 3027 5151 -995 30 45 0 0 chr11 55322275 55322319 -93461153 + GC_rich Low_complexity Low_complexity 1 44 0 249 31 0 0 chr11 55322353 55322380 -93461092 + (A)n Simple_repeat Simple_repeat 1 28 0 2924 148 17 15 chr11 55322380 55322914 -93460558 - L1MB1 LINE L1 -13 6155 5621 717 296 9 18 chr11 55322947 55323167 -93460305 - MIR SINE MIR -38 224 7 303 309 16 77 chr11 55323334 55323528 -93459944 + MIR SINE MIR 19 200 -62 395 118 24 24 chr11 55324455 55324540 -93458932 + L1PA16 LINE L1 6079 6163 -3 227 215 0 15 chr11 55324639 55324704 -93458768 + (TA)n Simple_repeat Simple_repeat 2 65 0 220 198 9 9 chr11 55324734 55324845 -93458627 + (TA)n Simple_repeat Simple_repeat 1 111 0 626 273 203 16 chr11 55324879 55325264 -93458208 - L2 LINE L2 -2 3311 2855 298 295 0 13 chr11 55325461 55325539 -93457933 + L2 LINE L2 3136 3212 -60 207 385 29 29 chr11 55325826 55326000 -93457472 - L2 LINE L2 -556 2758 2585 4752 32 7 0 chr11 55326269 55326833 -93456639 - L1PA3 LINE L1 0 6155 5588 213 81 54 0 chr11 55328338 55328375 -93455097 + T-rich Low_complexity Low_complexity 2 40 0 3953 158 20 11 chr11 55328480 55329195 -93454277 + L1PA16 LINE L1 5445 6165 -1 289 295 39 13 chr11 55329561 55329630 -93453842 + L2 LINE L2 3189 3262 -10 1932 148 7 3 chr11 55329630 55329914 -93453558 + AluSx SINE Alu 1 285 -27 228 111 0 0 chr11 55329922 55329958 -93453514 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 431 266 57 10 chr11 55330899 55331091 -93452381 - L1M4 LINE L1 -2086 4060 3860 270 0 0 0 chr11 55331162 55331192 -93452280 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 510 332 71 5 chr11 55331196 55331591 -93451881 + HERV16 LTR ERVL 2341 2761 -2235 235 263 13 0 chr11 55331675 55331751 -93451721 + L1ME LINE L1 5675 5751 -411 603 324 74 16 chr11 55331760 55332069 -93451403 - LTR16B LTR ERVL 0 464 138 261 0 0 0 chr11 55332369 55332398 -93451074 + (TG)n Simple_repeat Simple_repeat 2 30 0 27 29 0 0 chr11 55332565 55332599 -93450873 + AT_rich Low_complexity Low_complexity 1 34 0 472 297 109 44 chr11 55333318 55333456 -93450016 + L1MC4a LINE L1 5323 5451 -2357 2029 139 7 0 chr11 55333456 55333757 -93449715 + AluSx SINE Alu 1 303 -9 472 297 109 44 chr11 55333757 55334204 -93449268 + L1MC4a LINE L1 5451 5946 -1862 2338 112 3 0 chr11 55334312 55334624 -93448848 + AluSp SINE Alu 1 313 0 289 336 0 19 chr11 55334730 55334837 -93448635 + GA-rich Low_complexity Low_complexity 2 106 0 3733 256 79 22 chr11 55335543 55338319 -93445153 - L1MD2 LINE L1 0 6359 3374 1737 153 61 9 chr11 55338342 55338668 -93444804 - MER61A LTR ERV1 0 343 1 4206 89 97 1 chr11 55338668 55339321 -93444151 - MER61A-int LTR ERV1 0 5217 4503 1286 279 67 5 chr11 55339326 55339938 -93443534 - L1MD2 LINE L1 -3326 2820 2171 970 160 112 12 chr11 55339947 55340197 -93443275 + L1MDa LINE L1 2033 2307 -4233 1261 137 24 0 chr11 55340207 55340419 -93443053 - Tigger1 DNA MER2_type 0 2418 2202 544 217 7 36 chr11 55340408 55340546 -93442926 - Tigger1 DNA MER2_type -2261 157 24 * 574 185 42 80 chr11 55340546 55340784 -93442688 + L1MDa LINE L1 2322 2550 -3990 2102 115 14 3 chr11 55340962 55341257 -93442215 + AluSx SINE Alu 1 298 -14 490 115 0 0 chr11 55341752 55341830 -93441642 + L1PA13 LINE L1 6083 6160 -3 7711 220 18 11 chr11 55343942 55345732 -93437740 + L1PA16 LINE L1 3037 4814 -1352 231 36 0 0 chr11 55345732 55345760 -93437712 + (CA)n Simple_repeat Simple_repeat 1 28 0 189 0 0 0 chr11 55345759 55345780 -93437692 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 7711 220 18 11 chr11 55345760 55346972 -93436500 + L1PA16 LINE L1 4814 6046 -120 2014 184 28 14 chr11 55346974 55347333 -93436139 - THE1B LTR MaLR 0 364 1 8571 117 122 6 chr11 55347333 55348748 -93434724 - THE1B-int LTR MaLR 0 1580 1 2060 162 55 3 chr11 55348748 55349094 -93434378 - THE1B LTR MaLR 0 364 1 4139 154 60 29 chr11 55349097 55349898 -93433574 - LTR1B LTR ERV1 0 826 1 25183 182 33 26 chr11 55349899 55356714 -93426758 - LTR1B-int LTR ERV1 -1 7090 3 4272 166 45 14 chr11 55356716 55357517 -93425955 - LTR1B LTR ERV1 0 826 1 625 167 9 0 chr11 55357517 55357631 -93425841 + L1PA16 LINE L1 6043 6157 -9 237 345 92 0 chr11 55357999 55358118 -93425354 + L2 LINE L2 3184 3313 0 5095 200 49 45 chr11 55359053 55360594 -93422878 - MER52A LTR ERV1 0 1755 1 392 310 96 25 chr11 55360594 55360991 -93422481 + HERV16 LTR ERVL 2353 2777 -2219 318 365 0 0 chr11 55361343 55361458 -93422014 - LTR16B LTR ERVL -235 229 115 299 247 11 0 chr11 55361565 55361654 -93421818 + L1ME LINE L1 5755 5844 -326 399 56 0 0 chr11 55361767 55361821 -93421651 + (TG)n Simple_repeat Simple_repeat 2 55 0 24 32 0 0 chr11 55361977 55362008 -93421464 + AT_rich Low_complexity Low_complexity 1 31 0 439 308 117 26 chr11 55362727 55363309 -93420163 + L1MC4a LINE L1 5323 5957 -1851 262 337 20 0 chr11 55363490 55363588 -93419884 + GA-rich Low_complexity Low_complexity 3 102 0 436 270 13 7 chr11 55364291 55364443 -93419029 - L1MD1 LINE L1 -11 6231 6079 2931 204 51 36 chr11 55364443 55365300 -93418172 - L1MD2 LINE L1 -218 6141 5272 * 6331 35 0 0 chr11 55365299 55366080 -93417392 - L1PA3 LINE L1 0 6155 5375 3363 255 49 18 chr11 55366075 55367435 -93416037 - L1MD2 LINE L1 -870 5276 3875 * 2945 250 71 47 chr11 55367440 55367968 -93415504 - L1MD2 LINE L1 -2335 3811 3297 257 89 22 0 chr11 55367968 55368013 -93415459 + (TTTG)n Simple_repeat Simple_repeat 4 49 0 2945 250 71 47 chr11 55368013 55369086 -93414386 - L1MD2 LINE L1 -2849 3297 2171 883 182 80 19 chr11 55369090 55369137 -93414335 + L1MDa LINE L1 2028 2071 -4469 2207 119 3 0 chr11 55369137 55369440 -93414032 + AluSx SINE Alu 1 304 -8 883 182 80 19 chr11 55369440 55369656 -93413816 + L1MDa LINE L1 2071 2307 -4233 1135 164 24 0 chr11 55369670 55369878 -93413594 - Tigger1 DNA MER2_type -4 2414 2202 585 185 20 55 chr11 55369860 55370006 -93413466 - Tigger1 DNA MER2_type -2255 163 23 * 418 181 58 93 chr11 55370015 55370241 -93413231 + L1MDa LINE L1 2331 2548 -3992 24 0 0 0 chr11 55370644 55370668 -93412804 + AT_rich Low_complexity Low_complexity 1 24 0 448 82 68 0 chr11 55370914 55370987 -93412485 + L1PA14 LINE L1 6083 6160 -1 8706 207 13 6 chr11 55373112 55376102 -93407370 + L1PA16 LINE L1 3037 6049 -117 4427 141 65 14 chr11 55376102 55376888 -93406584 - LTR1B LTR ERV1 0 826 1 8706 207 13 6 chr11 55376888 55376998 -93406474 + L1PA16 LINE L1 6049 6157 -9 349 277 12 0 chr11 55377375 55377458 -93406014 + L2 LINE L2 3189 3272 0 254 203 0 16 chr11 55377883 55377947 -93405525 + (TG)n Simple_repeat Simple_repeat 2 64 0 407 326 82 0 chr11 55378559 55378792 -93404680 + HERV16 LTR ERVL 2527 2778 -2218 842 346 74 7 chr11 55378944 55379377 -93404095 - LTR16B LTR ERVL -2 462 1 368 212 0 12 chr11 55379382 55379467 -93404005 + L1ME3A LINE L1 5761 5844 -326 366 85 0 0 chr11 55379575 55379634 -93403838 + (TG)n Simple_repeat Simple_repeat 2 60 0 26 50 0 0 chr11 55379709 55379749 -93403723 + AT_rich Low_complexity Low_complexity 1 40 0 277 113 75 8 chr11 55379771 55379904 -93403568 + (TA)n Simple_repeat Simple_repeat 2 143 0 245 251 34 50 chr11 55379923 55380102 -93403370 + (ATGGTG)n Simple_repeat Simple_repeat 3 178 0 * 329 173 32 65 chr11 55379979 55380164 -93403308 + (ATG)n Simple_repeat Simple_repeat 1 179 0 379 149 47 0 chr11 55380176 55380283 -93403189 + (TA)n Simple_repeat Simple_repeat 2 113 0 3240 208 77 40 chr11 55381958 55382744 -93400728 + L1MD2 LINE L1 5422 6178 -181 1826 200 73 43 chr11 55382744 55383234 -93400238 - MLT1D LTR MaLR 0 505 1 3240 208 77 40 chr11 55383234 55383269 -93400203 + L1MD2 LINE L1 6178 6210 -149 2201 96 3 7 chr11 55383269 55383560 -93399912 + AluSp SINE Alu 12 301 -12 3240 208 77 40 chr11 55383560 55383639 -93399833 + L1MD2 LINE L1 6210 6356 -3 360 202 0 79 chr11 55384061 55384150 -93399322 - MLT1H LTR MaLR -393 156 75 344 291 36 9 chr11 55384306 55384416 -93399056 + L2 LINE L2 3200 3312 -1 603 259 94 102 chr11 55384456 55384858 -93398614 + MER77 LTR ERV1 132 530 -75 294 185 18 114 chr11 55384877 55384936 -93398536 - MLT1A1 LTR MaLR 0 428 365 2193 102 0 0 chr11 55384936 55385253 -93398219 + AluY SINE Alu 1 317 0 294 185 18 114 chr11 55385253 55385292 -93398180 - MLT1A1 LTR MaLR -63 365 271 2922 211 69 57 chr11 55385296 55386658 -93396814 - MLT1A1-int LTR MaLR -1 1370 16 226 241 17 17 chr11 55386658 55386670 -93396802 + MER77 LTR ERV1 527 538 -67 1184 226 105 6 chr11 55386670 55387002 -93396470 - MLT1A1 LTR MaLR 0 365 1 226 241 17 17 chr11 55387002 55387047 -93396425 + MER77 LTR ERV1 537 584 -21 316 369 58 17 chr11 55387124 55387365 -93396107 - LTR16C LTR ERVL -94 397 147 231 255 0 0 chr11 55387529 55387576 -93395896 + MLT1L LTR MaLR 206 252 -363 35 0 0 22 chr11 55388959 55388977 -93394495 + AT_rich Low_complexity Low_complexity 1 18 -27 1802 101 4 0 chr11 55388977 55389214 -93394258 + AluSq SINE Alu 1 238 -75 35 0 0 22 chr11 55389214 55389241 -93394231 + AT_rich Low_complexity Low_complexity 18 45 0 24 32 0 0 chr11 55389341 55389372 -93394100 + AT_rich Low_complexity Low_complexity 1 31 0 319 68 0 0 chr11 55389392 55389436 -93394036 + AluSq SINE Alu 243 286 -17 285 98 0 0 chr11 55389447 55389488 -93393984 + (CA)n Simple_repeat Simple_repeat 2 42 0 610 290 84 21 chr11 55389714 55390049 -93393423 - L1ME LINE L1 -492 5670 5315 25 75 0 0 chr11 55390349 55390402 -93393070 + AT_rich Low_complexity Low_complexity 1 53 0 355 342 35 26 chr11 55390901 55391132 -93392340 + L1ME LINE L1 5428 5660 -502 21 0 0 0 chr11 55391426 55391447 -93392025 + AT_rich Low_complexity Low_complexity 1 21 0 250 130 19 19 chr11 55393611 55393665 -93389807 + (TA)n Simple_repeat Simple_repeat 2 55 0 364 335 68 26 chr11 55394240 55394506 -93388966 - MER90 LTR ERV1 -53 561 285 13953 197 26 16 chr11 55394533 55398579 -93384893 + L1MA9 LINE L1 2074 6171 -377 585 230 45 21 chr11 55398576 55398813 -93384659 - L1M3c LINE L1 -5212 929 639 * 1205 304 138 16 chr11 55398824 55399331 -93384141 - L1M3c LINE L1 -5546 595 27 2916 65 23 0 chr11 55399686 55400070 -93383402 - L1PA7 LINE L1 -3 6151 5759 6577 63 20 2 chr11 55400075 55401537 -93381935 + L1PA7 LINE L1 4680 6154 0 964 243 4 58 chr11 55401771 55402014 -93381458 - MLT1E LTR MaLR -154 439 210 180 324 59 29 chr11 55402455 55402557 -93380915 + MER5A DNA MER1_type 30 134 -55 268 306 93 27 chr11 55402608 55402791 -93380681 + MIR SINE MIR 7 201 -61 372 59 0 0 chr11 55402930 55402981 -93380491 + (CA)n Simple_repeat Simple_repeat 1 51 0 210 37 0 0 chr11 55403087 55403114 -93380358 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 452 141 0 0 chr11 55403328 55403399 -93380073 - MSTA LTR MaLR 0 428 358 * 1018 200 113 17 chr11 55403384 55403614 -93379858 - MSTA LTR MaLR -176 252 1 1066 271 76 62 chr11 55403799 55404300 -93379172 + MER90 LTR ERV1 107 614 0 246 62 0 0 chr11 55404497 55404529 -93378943 + (CA)n Simple_repeat Simple_repeat 2 33 0 256 342 0 23 chr11 55404784 55404902 -93378570 - MIR SINE MIR -63 145 31 3750 256 71 38 chr11 55405017 55405671 -93377801 + L1MEc LINE L1 37 668 -5728 1522 194 0 32 chr11 55405671 55405980 -93377492 + AluJo SINE Alu 1 299 -13 3750 256 71 38 chr11 55405980 55406003 -93377469 + L1MEc LINE L1 668 689 -5707 2351 104 0 0 chr11 55406003 55406302 -93377170 - AluSg SINE Alu -11 299 1 3750 256 71 38 chr11 55406302 55406623 -93376849 + L1MEc LINE L1 689 998 -5398 2142 118 0 14 chr11 55406623 55406919 -93376553 + AluSx SINE Alu 4 295 -17 3750 256 71 38 chr11 55406919 55407419 -93376053 + L1MEc LINE L1 998 1586 -4810 938 127 0 8 chr11 55407697 55407831 -93375641 - AluSq/x SINE Alu -180 133 1 814 159 7 14 chr11 55408203 55408341 -93375131 - FRAM SINE Alu -20 156 20 252 86 0 0 chr11 55408788 55408823 -93374649 - L1MA6 LINE L1 -141 6159 6125 1158 86 0 0 chr11 55408824 55408986 -93374486 + L1MA6 LINE L1 6139 6300 0 376 297 114 34 chr11 55409649 55409824 -93373648 - MIR SINE MIR -59 203 15 25 51 0 0 chr11 55409911 55409950 -93373522 + AT_rich Low_complexity Low_complexity 1 39 0 1370 173 119 0 chr11 55410409 55410669 -93372803 - AluJo SINE Alu -9 293 3 1451 158 26 164 chr11 55410674 55411175 -93372297 - L1MA7 LINE L1 -5 6286 5855 299 281 46 46 chr11 55411995 55412148 -93371324 + MER103 DNA DNA 1 153 -13 240 232 14 14 chr11 55412194 55412263 -93371209 + HsTC2 DNA Tc2 11 79 -1819 1464 125 159 51 chr11 55412358 55412654 -93370818 - MER54B LTR ERVL -7 786 459 1036 190 0 0 chr11 55412660 55412823 -93370649 - MER54B LTR ERVL -630 163 1 1573 208 23 7 chr11 55413179 55413487 -93369985 + L1MA8 LINE L1 469 781 -6708 2987 206 23 20 chr11 55413528 55414153 -93369319 + L1MA8 LINE L1 3342 3970 -3595 3686 54 4 0 chr11 55414153 55414616 -93368856 - L1PA5 LINE L1 -1 6153 5689 2987 206 23 20 chr11 55414616 55414884 -93368588 + L1MA8 LINE L1 3970 4236 -3329 2158 183 139 8 chr11 55414879 55415410 -93368062 + L1MA8 LINE L1 5744 6344 -1221 * 8254 182 14 4 chr11 55415405 55417000 -93366472 + L1PA15 LINE L1 3682 5291 -855 41572 61 2 4 chr11 55417003 55423173 -93360299 + L1PA5 LINE L1 1 6154 0 5497 121 24 2 chr11 55423166 55424025 -93359447 + L1PA15 LINE L1 5281 6158 -7 * 21 0 0 0 chr11 55424026 55424047 -93359425 + AT_rich Low_complexity Low_complexity 1 21 0 272 268 10 72 chr11 55424068 55424165 -93359307 - MER5B DNA MER1_type -34 144 54 1034 257 119 21 chr11 55424346 55424673 -93358799 + LTR40b LTR ERVL 1 359 -103 5480 161 15 24 chr11 55424685 55426087 -93357385 + L1MA8 LINE L1 6325 7707 -3 1945 167 27 74 chr11 55426415 55426822 -93356650 - MLT1B LTR MaLR -2 388 1 285 293 61 0 chr11 55427238 55427337 -93356135 - MIR SINE MIR -4 258 154 197 258 48 32 chr11 55427341 55427403 -93356069 + MIR SINE MIR 183 245 -17 414 299 104 15 chr11 55427416 55427550 -93355922 - MIR SINE MIR -113 149 4 292 311 61 27 chr11 55428419 55428567 -93354905 - MIR SINE MIR -33 229 77 377 340 35 14 chr11 55428723 55428867 -93354605 - L2 LINE L2 0 3272 3126 244 348 22 7 chr11 55429290 55429425 -93354047 + MIR SINE MIR 98 234 -28 258 269 15 0 chr11 55429425 55429492 -93353980 + MLT1J LTR MaLR 286 353 -158 2520 166 70 20 chr11 55430316 55430773 -93352699 + MLT2B1 LTR ERVL 1 480 -40 189 0 0 0 chr11 55430774 55430795 -93352677 + (TG)n Simple_repeat Simple_repeat 2 22 0 433 70 14 14 chr11 55430846 55430917 -93352555 + (TA)n Simple_repeat Simple_repeat 1 71 0 1971 121 3 3 chr11 55431082 55431391 -93352081 - AluSg SINE Alu 0 309 1 1904 274 47 38 chr11 55431404 55432091 -93351381 - L1M4b LINE L1 -6145 714 22 288 157 20 0 chr11 55432229 55432280 -93351192 + Tigger1 DNA MER2_type 1998 2049 -369 722 121 0 0 chr11 55432302 55432401 -93351071 - AluSg/x SINE Alu -11 301 203 1374 227 18 57 chr11 55432455 55432948 -93350524 + L1M4 LINE L1 1022 1495 -5047 1197 255 91 10 chr11 55432971 55433379 -93350093 + MER20B DNA MER1_type 277 717 -66 304 193 40 127 chr11 55434558 55434708 -93348764 + L1MC4 LINE L1 6615 6751 -1291 1157 251 54 88 chr11 55434710 55435330 -93348142 - L2 LINE L2 -1 3312 2702 207 0 0 0 chr11 55435333 55435356 -93348116 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2119 106 7 7 chr11 55435358 55435640 -93347832 - AluSg SINE Alu -28 282 1 777 306 149 22 chr11 55435672 55436127 -93347345 - MLT1K LTR MaLR -73 515 3 201 286 99 0 chr11 55436387 55436478 -93346994 + MIR3 SINE MIR 102 201 -7 186 344 17 78 chr11 55437297 55437527 -93345945 + L2 LINE L2 2898 3113 -159 1378 231 68 74 chr11 55437711 55438364 -93345108 + MLT1F1 LTR MaLR 1 567 0 22 0 0 0 chr11 55438683 55438705 -93344767 + AT_rich Low_complexity Low_complexity 1 22 0 354 296 33 17 chr11 55439394 55439515 -93343957 + MIR SINE MIR 21 151 -57 2445 194 77 81 chr11 55439539 55440192 -93343280 + MLT1E1 LTR MaLR 5 654 0 512 311 7 0 chr11 55440198 55440333 -93343139 + MER117 DNA MER1_type 11 146 -51 248 237 0 17 chr11 55440341 55440400 -93343072 - MLT1K LTR MaLR -4 584 527 3167 144 16 14 chr11 55440408 55440710 -93342762 - LTR42 LTR ERVL 0 495 190 2383 103 47 33 chr11 55440710 55441069 -93342403 - THE1B LTR MaLR 0 364 1 3167 144 16 14 chr11 55441069 55441260 -93342212 - LTR42 LTR ERVL -305 190 1 389 262 117 0 chr11 55441284 55441387 -93342085 - L2 LINE L2 -3 3310 3196 271 235 0 44 chr11 55441392 55441460 -93342012 - MLT1K LTR MaLR -77 511 447 281 287 56 42 chr11 55442486 55442629 -93340843 + MIR SINE MIR 54 198 -64 942 233 0 93 chr11 55442773 55443052 -93340420 + MIR SINE MIR 10 262 0 247 337 82 75 chr11 55443055 55443310 -93340162 - L2 LINE L2 0 3272 3016 206 261 0 0 chr11 55445353 55445399 -93338073 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 569 322 28 0 chr11 55445455 55445635 -93337837 - MER91A DNA MER1_type -11 185 1 451 319 129 4 chr11 55446454 55446686 -93336786 + MIR SINE MIR 2 262 0 842 329 111 57 chr11 55446687 55447859 -93335613 - L2 LINE L2 0 3313 2064 340 21 0 42 chr11 55447859 55447907 -93335565 + L1PA3 LINE L1 6110 6155 0 842 329 111 57 chr11 55447907 55448038 -93335434 - L2 LINE L2 -1249 2064 1941 1635 278 57 40 chr11 55448755 55449384 -93334088 + L2 LINE L2 34 673 -2641 1426 269 19 9 chr11 55449392 55449816 -93333656 - L1PA12 LINE L1 -6138 1443 1016 2644 244 88 53 chr11 55449816 55450182 -93333290 + L2 LINE L2 1900 2252 -1062 2216 77 10 17 chr11 55450182 55450480 -93332992 - AluSp SINE Alu -17 296 1 2644 244 88 53 chr11 55450480 55451074 -93332398 + L2 LINE L2 2252 2894 -420 536 298 161 42 chr11 55451041 55451326 -93332146 + L2 LINE L2 2995 3313 0 * 276 244 20 65 chr11 55451324 55451436 -93332036 - MIR SINE MIR -75 133 22 * 247 271 0 0 chr11 55453017 55453087 -93330385 - MLT1K LTR MaLR -23 565 496 554 229 14 124 chr11 55453106 55453324 -93330148 + MIR SINE MIR 9 202 -60 1986 204 43 28 chr11 55453324 55453650 -93329822 + MLT1C LTR MaLR 1 338 -129 1286 211 35 105 chr11 55453650 55453914 -93329558 - MLT1A2 LTR MaLR 0 374 146 2295 97 3 3 chr11 55453914 55454223 -93329249 - AluSc SINE Alu 0 309 1 1286 211 35 105 chr11 55454223 55454357 -93329115 - MLT1A2 LTR MaLR -228 146 4 1986 204 43 28 chr11 55454357 55454490 -93328982 + MLT1C LTR MaLR 338 467 0 240 293 0 0 chr11 55454497 55454555 -93328917 + MIR SINE MIR 205 262 0 1268 280 93 10 chr11 55454563 55454959 -93328513 - MLT1K LTR MaLR -114 474 46 268 242 121 40 chr11 55455105 55455229 -93328243 - LTR67 LTR ERVL -19 538 405 468 278 64 17 chr11 55456141 55456314 -93327158 - MIR SINE MIR -1 261 81 468 149 11 0 chr11 55456494 55456588 -93326884 + L1MB3 LINE L1 6089 6183 0 497 273 56 31 chr11 55456601 55456762 -93326710 - MIR SINE MIR -27 235 71 279 261 9 17 chr11 55456768 55456883 -93326589 + (TTA)n Simple_repeat Simple_repeat 2 115 0 863 236 25 33 chr11 55456883 55457125 -93326347 + MIR SINE MIR 23 262 0 209 189 122 67 chr11 55457116 55457206 -93326266 - MIR SINE MIR -103 159 65 * 286 340 48 19 chr11 55457598 55457701 -93325771 - MER5A DNA MER1_type -81 108 3 211 283 22 54 chr11 55457701 55457793 -93325679 - MIR SINE MIR -152 110 22 27 29 0 0 chr11 55457825 55457859 -93325613 + AT_rich Low_complexity Low_complexity 1 34 0 230 306 88 25 chr11 55457865 55458025 -93325447 + L1ME4a LINE L1 5930 6099 -22 23 0 0 0 chr11 55458059 55458082 -93325390 + AT_rich Low_complexity Low_complexity 1 23 0 396 211 55 9 chr11 55458495 55458604 -93324868 + L1ME2 LINE L1 5712 5825 -339 253 319 0 0 chr11 55458694 55458763 -93324709 + L3 LINE CR1 434 502 -1075 346 285 29 7 chr11 55458948 55459085 -93324387 - Tigger8 DNA MER2_type -117 549 410 538 321 169 62 chr11 55459549 55459680 -93323792 + L3 LINE CR1 687 803 -774 621 221 26 0 chr11 55459680 55459935 -93323537 + FLAM_A SINE Alu 1 258 0 538 321 169 62 chr11 55459935 55460604 -93322868 + L3 LINE CR1 803 1576 -1 23 0 0 0 chr11 55461252 55461275 -93322197 + AT_rich Low_complexity Low_complexity 1 23 0 261 273 102 0 chr11 55461843 55461931 -93321541 + MLT1J LTR MaLR 136 232 -279 492 187 187 11 chr11 55462527 55462714 -93320758 - MER113 DNA MER1_type? -297 224 5 2061 293 67 20 chr11 55463114 55463233 -93320239 - L2 LINE L2 -10 3303 3191 2145 192 14 0 chr11 55463233 55463593 -93319879 + MLT1A1 LTR MaLR 1 365 0 2061 293 67 20 chr11 55463593 55464083 -93319389 - L2 LINE L2 -122 3191 2623 2288 91 3 0 chr11 55464083 55464379 -93319093 + AluSg SINE Alu 1 297 -13 2061 293 67 20 chr11 55464379 55464657 -93318815 - L2 LINE L2 -690 2623 2360 5149 237 29 75 chr11 55464663 55465387 -93318085 - L1MEc LINE L1 -4578 1818 1062 1916 158 0 0 chr11 55465387 55465671 -93317801 + AluSx SINE Alu 1 284 -28 5149 237 29 75 chr11 55465671 55465975 -93317497 - L1MEc LINE L1 -5334 1062 746 272 47 0 23 chr11 55465975 55466018 -93317454 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 5149 237 29 75 chr11 55466018 55466835 -93316637 - L1MEc LINE L1 -5650 746 57 317 159 63 0 chr11 55466836 55466899 -93316573 - L2 LINE L2 -955 2359 2293 * 772 240 7 0 chr11 55466891 55467037 -93316435 - MER5A DNA MER1_type -37 152 6 375 344 69 42 chr11 55467262 55467550 -93315922 + L2 LINE L2 2882 3177 -95 1891 252 96 8 chr11 55467628 55468242 -93315230 + MER20B DNA MER1_type 50 717 -66 595 291 43 47 chr11 55468591 55468849 -93314623 + MIR SINE MIR 3 259 -3 453 159 0 0 chr11 55469974 55470043 -93313429 + Tigger2 DNA MER2_type 1 69 -2649 * 2721 131 32 5 chr11 55470032 55470466 -93313006 + Tigger2 DNA MER2_type 2273 2718 0 2113 131 3 19 chr11 55470474 55470787 -93312685 + AluSx SINE Alu 1 308 -4 429 324 178 16 chr11 55471044 55471407 -93312065 + L2 LINE L2 2774 3199 -73 23 0 0 0 chr11 55471605 55471628 -93311844 + AT_rich Low_complexity Low_complexity 1 23 0 801 229 64 34 chr11 55471694 55471960 -93311512 - Charlie8 DNA MER1_type -2141 276 3 252 323 63 27 chr11 55472366 55472532 -93310940 + MIR SINE MIR 16 183 -60 2793 103 5 16 chr11 55472809 55473188 -93310284 + THE1C LTR MaLR 1 375 0 335 352 9 0 chr11 55473348 55473453 -93310019 - MIR SINE MIR -156 106 1 270 258 7 86 chr11 55473546 55473697 -93309775 - L2 LINE L2 -95 3218 3080 549 283 131 0 chr11 55473944 55474135 -93309337 - MIR SINE MIR -15 247 32 1734 149 61 76 chr11 55474241 55474488 -93308984 - MLT1B LTR MaLR 0 390 150 1720 141 47 17 chr11 55474488 55474785 -93308687 - AluSx SINE Alu -6 306 1 1734 149 61 76 chr11 55474785 55474933 -93308539 - MLT1B LTR MaLR -240 150 1 6296 81 8 17 chr11 55475290 55476175 -93307297 + L1PA13 LINE L1 5286 6162 -1 254 344 0 0 chr11 55476299 55476392 -93307080 + GA-rich Low_complexity Low_complexity 2 94 0 305 226 51 109 chr11 55476742 55476879 -93306593 - MER103 DNA DNA -1 165 37 2283 171 21 3 chr11 55477383 55477762 -93305710 + MLT1B LTR MaLR 5 390 0 507 331 62 8 chr11 55477894 55478154 -93305318 + MLT1L LTR MaLR 172 445 -170 1968 221 99 87 chr11 55478429 55478553 -93304919 + MER21B LTR ERV1 1 122 -741 2222 118 0 16 chr11 55478553 55478866 -93304606 - AluY SINE Alu -3 308 1 1968 221 99 87 chr11 55478866 55479510 -93303962 + MER21B LTR ERV1 122 778 -85 233 256 168 15 chr11 55479579 55479716 -93303756 - MIR SINE MIR -92 170 13 27 29 0 0 chr11 55480119 55480153 -93303319 + AT_rich Low_complexity Low_complexity 1 34 0 198 0 0 0 chr11 55480404 55480426 -93303046 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 196 167 0 33 chr11 55480574 55480634 -93302838 + CT-rich Low_complexity Low_complexity 1 58 0 323 212 71 18 chr11 55482168 55482281 -93301191 - MIR SINE MIR -68 194 76 22 0 0 0 chr11 55483432 55483454 -93300018 + AT_rich Low_complexity Low_complexity 1 22 0 2222 109 0 28 chr11 55483662 55483983 -93299489 + AluSx SINE Alu 1 312 0 1211 286 88 11 chr11 55484117 55484494 -93298978 - MLT1I LTR MaLR -3 406 1 708 251 23 23 chr11 55485054 55485269 -93298203 + MIR SINE MIR 43 257 -5 3472 121 26 0 chr11 55485538 55486066 -93297406 - L1PA14 LINE L1 0 6161 5620 383 311 19 0 chr11 55486438 55486541 -93296931 + MIR3 SINE MIR 76 180 -28 437 296 64 39 chr11 55486697 55486900 -93296572 - MIR SINE MIR -23 239 32 187 274 55 27 chr11 55487693 55487766 -93295706 - L2 LINE L2 -18 3254 3180 260 218 0 0 chr11 55488045 55488100 -93295372 - L2 LINE L2 -281 2991 2937 189 239 109 109 chr11 55489004 55489251 -93294221 + L2 LINE L2 2864 3110 -162 404 225 12 0 chr11 55489508 55489588 -93293884 + Tigger1 DNA MER2_type 1 81 -2337 276 83 0 0 chr11 55489585 55489621 -93293851 + Tigger1 DNA MER2_type 560 595 -1823 * 1116 156 0 12 chr11 55489621 55489794 -93293678 + FRAM SINE Alu 1 168 -8 12848 139 14 39 chr11 55489808 55489888 -93293584 - Tigger1 DNA MER2_type -277 2141 2061 2230 113 0 0 chr11 55489888 55490179 -93293293 + AluSg SINE Alu 1 291 -19 12848 139 14 39 chr11 55490179 55490435 -93293037 - Tigger1 DNA MER2_type -357 2061 1800 2238 115 3 10 chr11 55490435 55490740 -93292732 + AluSx SINE Alu 1 303 -9 12848 139 14 39 chr11 55490740 55492598 -93290874 - Tigger1 DNA MER2_type -618 1800 1 633 250 44 48 chr11 55492645 55492961 -93290511 + L1MEc LINE L1 1971 2285 -4111 587 261 54 50 chr11 55492971 55493212 -93290260 + L1M4b LINE L1 -302 4294967235 -6607 695 175 42 71 chr11 55493626 55493930 -93289542 + MLT1E2 LTR MaLR 1 369 -136 1852 134 11 0 chr11 55493930 55494191 -93289281 + AluSq SINE Alu 1 264 -49 626 128 0 9 chr11 55494202 55494311 -93289161 + (GGA)n Simple_repeat Simple_repeat 3 110 0 437 195 203 8 chr11 55494311 55494439 -93289033 + MLT1E2 LTR MaLR 353 505 0 1753 224 46 56 chr11 55494451 55495167 -93288305 + L1M4b LINE L1 875 1593 -5041 2055 171 53 37 chr11 55495210 55495665 -93287807 - MLT1C LTR MaLR 0 467 6 784 342 55 38 chr11 55495775 55496281 -93287191 - REP3 LTR ERV -47 515 1 1181 248 64 43 chr11 55496292 55496337 -93287135 + L1M4b LINE L1 1525 1568 -5078 1983 97 0 0 chr11 55496337 55496615 -93286857 + L1MA1 LINE L1 6019 6296 -6 1181 248 64 43 chr11 55496615 55496769 -93286703 + L1M4b LINE L1 1568 1717 -4929 1683 169 3 35 chr11 55496769 55497083 -93286389 + AluJb SINE Alu 1 304 -8 1181 248 64 43 chr11 55497083 55497442 -93286030 + L1M4b LINE L1 1717 2096 -4550 24 53 0 0 chr11 55497469 55497507 -93285965 + AT_rich Low_complexity Low_complexity 1 38 0 243 269 26 92 chr11 55497507 55497812 -93285660 + L1M4b LINE L1 2238 2522 -4303 502 279 23 0 chr11 55497830 55498002 -93285470 + L1M4b LINE L1 2681 2856 -3788 273 114 114 0 chr11 55498138 55498208 -93285264 - MIR SINE MIR -48 214 137 1063 310 125 14 chr11 55498289 55499094 -93284378 - L2 LINE L2 -36 3277 2375 183 329 53 13 chr11 55499209 55499285 -93284187 - L2 LINE L2 -67 3205 3127 387 333 68 61 chr11 55499614 55500173 -93283299 - L2 LINE L2 -530 2784 2222 647 284 16 11 chr11 55500188 55500378 -93283094 - MIR SINE MIR -27 235 45 518 278 40 17 chr11 55500526 55500699 -93282773 - MIR3 SINE MIR -12 196 20 457 303 162 15 chr11 55500806 55501139 -93282333 + L2 LINE L2 2804 3189 -124 2149 96 46 0 chr11 55501139 55501421 -93282051 + AluSc SINE Alu 1 295 -14 208 227 0 0 chr11 55501504 55501548 -93281924 + GA-rich Low_complexity Low_complexity 4 47 0 356 308 0 0 chr11 55502449 55502569 -93280903 - MIR SINE MIR -59 203 84 337 325 49 8 chr11 55503184 55503307 -93280165 - MIR SINE MIR -56 152 25 867 214 78 15 chr11 55503331 55503537 -93279935 + MER20 DNA MER1_type 1 219 0 198 310 48 14 chr11 55503683 55503828 -93279644 + L2 LINE L2 2918 3067 -205 776 281 0 47 chr11 55503933 55504189 -93279283 + MIR SINE MIR 18 261 -1 826 207 56 28 chr11 55504564 55504777 -93278695 - MER20 DNA MER1_type 0 219 1 657 193 82 106 chr11 55504799 55505006 -93278466 + MER106B DNA MER1_type 35 1059 0 300 343 109 0 chr11 55505520 55505695 -93277777 - MIR SINE MIR -42 220 27 239 326 10 10 chr11 55506384 55506482 -93276990 + MIR3 SINE MIR 62 159 -49 728 166 0 7 chr11 55506630 55506775 -93276697 + GA-rich Low_complexity Low_complexity 3 146 0 495 279 50 6 chr11 55506824 55507003 -93276469 - MIR SINE MIR -72 190 4 1047 293 88 14 chr11 55507862 55508292 -93275180 + MLT1J LTR MaLR 5 466 -45 2380 50 0 0 chr11 55508583 55508866 -93274606 + L1P3 LINE L1 5519 5801 -371 629 262 75 0 chr11 55510211 55510398 -93273074 - MIR SINE MIR -1 261 61 237 128 0 0 chr11 55510807 55510854 -93272618 + (CATA)n Simple_repeat Simple_repeat 2 48 0 464 76 86 14 chr11 55510880 55511099 -93272373 + (TAGA)n Simple_repeat Simple_repeat 1 234 0 225 321 0 0 chr11 55511443 55511527 -93271945 - MIR SINE MIR -4 258 175 2195 126 0 7 chr11 55511700 55512009 -93271463 + AluSx SINE Alu 1 307 -5 335 188 62 12 chr11 55512009 55512089 -93271383 + MLT1J2 LTR MaLR 367 450 0 224 136 91 0 chr11 55512092 55512136 -93271336 + MIR SINE MIR 159 206 -56 331 241 13 0 chr11 55512450 55512529 -93270943 - L3 LINE CR1 -5 1572 1493 579 297 43 0 chr11 55512749 55512934 -93270538 + MIR SINE MIR 60 252 -10 542 303 26 20 chr11 55514363 55514558 -93268914 + MIR SINE MIR 47 242 -20 337 253 0 0 chr11 55515522 55515601 -93267871 - L2 LINE L2 -1 3312 3234 228 161 48 0 chr11 55515634 55515696 -93267776 + (TTAAA)n Simple_repeat Simple_repeat 3 67 0 302 326 59 45 chr11 55516209 55516430 -93267042 + MIR SINE MIR 3 226 -36 823 306 143 25 chr11 55516465 55516887 -93266585 - MLT1K LTR MaLR -10 578 83 2218 113 0 23 chr11 55516887 55517197 -93266275 + AluSg SINE Alu 1 303 -7 823 306 143 25 chr11 55517197 55517290 -93266182 - MLT1K LTR MaLR -505 83 2 201 74 0 0 chr11 55517665 55517692 -93265780 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 990 252 107 16 chr11 55517940 55518250 -93265222 + MER102b DNA MER1_type 1 338 -3 252 57 94 0 chr11 55518301 55518354 -93265118 + (TTATA)n Simple_repeat Simple_repeat 5 62 0 385 310 32 59 chr11 55518694 55518881 -93264591 + L2 LINE L2 3090 3271 -1 216 0 0 0 chr11 55519127 55519151 -93264321 + (A)n Simple_repeat Simple_repeat 1 24 0 815 265 4 23 chr11 55519310 55519567 -93263905 + L2 LINE L2 2863 3114 -199 342 302 75 81 chr11 55519620 55519928 -93263544 - MLT1K LTR MaLR -144 444 139 420 258 57 8 chr11 55519959 55520083 -93263389 - MLT1K LTR MaLR -371 217 88 312 288 0 18 chr11 55521014 55521125 -93262347 - MIR3 SINE MIR -39 169 61 479 237 166 19 chr11 55521665 55521876 -93261596 + MIR SINE MIR 4 245 -17 186 332 37 16 chr11 55522525 55522669 -93260803 - MIR SINE MIR -67 141 2 2433 86 47 36 chr11 55522696 55522898 -93260574 - THE1B LTR MaLR 0 364 155 2346 104 0 13 chr11 55522898 55523206 -93260266 + AluSq SINE Alu 2 305 -8 2433 86 47 36 chr11 55523206 55523363 -93260109 - THE1B LTR MaLR -209 155 1 388 293 8 16 chr11 55523708 55523831 -93259641 + MIR SINE MIR 24 145 -117 2062 108 4 0 chr11 55523863 55524131 -93259341 + AluSx SINE Alu 21 289 -23 342 340 26 26 chr11 55524214 55524405 -93259067 + MIR SINE MIR 66 256 -6 38 39 0 0 chr11 55525270 55525322 -93258150 + AT_rich Low_complexity Low_complexity 1 52 0 827 169 0 0 chr11 55525322 55525452 -93258020 + FLAM_C SINE Alu 1 130 -3 2813 146 47 8 chr11 55525463 55525949 -93257523 - L1MA7 LINE L1 -21 6270 5766 2660 80 3 28 chr11 55525952 55526316 -93257156 - THE1A LTR MaLR 0 355 1 11688 95 6 15 chr11 55526316 55527529 -93255943 - THE1A-int LTR MaLR 0 1580 384 1783 126 4 15 chr11 55527529 55527792 -93255680 + AluSx SINE Alu 53 312 0 11688 95 6 15 chr11 55527792 55528173 -93255299 - THE1A-int LTR MaLR -1196 384 1 1087 80 0 0 chr11 55528173 55528310 -93255162 - THE1A LTR MaLR 0 355 219 742 139 0 16 chr11 55528310 55528432 -93255040 - L1MA7 LINE L1 -525 5766 5647 394 248 41 31 chr11 55528433 55528632 -93254840 + L2 LINE L2 3107 3303 -10 267 299 0 52 chr11 55528750 55528827 -93254645 + MIR SINE MIR 54 126 -136 * 442 185 115 54 chr11 55528816 55528946 -93254526 + L2 LINE L2 3105 3242 -71 200 303 112 0 chr11 55529012 55529101 -93254371 + MIR SINE MIR 159 257 -5 347 365 62 0 chr11 55529533 55529678 -93253794 - L2 LINE L2 0 3272 3119 341 311 0 10 chr11 55530103 55530206 -93253266 + (CA)n Simple_repeat Simple_repeat 2 103 0 234 0 0 0 chr11 55530568 55530594 -93252878 + (TTA)n Simple_repeat Simple_repeat 1 26 0 1717 181 0 9 chr11 55530722 55531037 -93252435 - AluJo SINE Alu 0 312 1 649 295 26 0 chr11 55531078 55531271 -93252201 - MIR SINE MIR 0 262 65 2055 215 51 23 chr11 55531725 55532199 -93251273 - MLT1E3 LTR MaLR 0 624 138 1753 220 77 14 chr11 55532265 55532709 -93250763 - MLT1D LTR MaLR 0 505 1 3333 74 14 5 chr11 55533261 55533706 -93249766 - L1PA13 LINE L1 -5 6158 5710 186 43 0 0 chr11 55533812 55533835 -93249637 + (CAT)n Simple_repeat Simple_repeat 3 25 0 316 274 94 26 chr11 55533993 55534110 -93249362 - L1 LINE L1 -1635 4511 4387 276 284 11 11 chr11 55534638 55534726 -93248746 + GA-rich Low_complexity Low_complexity 3 90 0 443 207 0 0 chr11 55534847 55534934 -93248538 - MER103 DNA DNA -69 97 11 351 290 65 16 chr11 55535301 55535425 -93248047 - MIR SINE MIR -41 221 92 24 32 0 0 chr11 55535469 55535500 -93247972 + AT_rich Low_complexity Low_complexity 1 31 0 184 104 0 167 chr11 55535821 55535869 -93247603 - L2 LINE L2 -13 3300 3261 343 324 108 0 chr11 55536107 55536209 -93247263 + L2 LINE L2 3201 3313 0 309 118 0 0 chr11 55537211 55537262 -93246210 + (GGGA)n Simple_repeat Simple_repeat 1 51 0 192 97 0 0 chr11 55538040 55538071 -93245401 + (TG)n Simple_repeat Simple_repeat 1 31 0 362 354 0 0 chr11 55540336 55540463 -93243009 - MIR SINE MIR -63 145 47 211 315 0 19 chr11 55540476 55540530 -93242942 - MIR SINE MIR -133 75 23 705 246 109 11 chr11 55540669 55540852 -93242620 - MIR SINE MIR -21 241 41 218 292 36 77 chr11 55541658 55541826 -93241646 - MIR3 SINE MIR -7 201 41 2399 87 0 3 chr11 55542579 55542889 -93240583 - AluSc SINE Alu 0 309 1 34 65 0 0 chr11 55543264 55543326 -93240146 + AT_rich Low_complexity Low_complexity 1 62 0 878 253 16 16 chr11 55543339 55543533 -93239939 - MIR SINE MIR -60 202 9 734 280 128 91 chr11 55543602 55544280 -93239192 - L2 LINE L2 -4 3309 2591 390 266 139 29 chr11 55544282 55544455 -93239017 + MIR SINE MIR 60 251 -11 288 264 75 19 chr11 55544921 55545027 -93238445 - L2 LINE L2 -20 3293 3182 453 279 26 32 chr11 55545819 55545973 -93237499 - MIR SINE MIR -16 246 94 507 191 66 44 chr11 55546096 55546232 -93237240 - MIR SINE MIR -36 226 88 205 269 179 64 chr11 55546425 55546581 -93236891 - MIR SINE MIR -56 206 33 579 101 0 0 chr11 55548045 55548124 -93235348 - MADE1 DNA Mariner -1 79 1 180 217 0 0 chr11 55549040 55549086 -93234386 + GA-rich Low_complexity Low_complexity 2 47 0 279 54 0 0 chr11 55550117 55550154 -93233318 + (ATG)n Simple_repeat Simple_repeat 2 38 0 962 222 35 5 chr11 55550154 55550352 -93233120 - MIR SINE MIR -11 251 48 2573 101 20 0 chr11 55550453 55550801 -93232671 - THE1A LTR MaLR 0 355 1 550 281 91 1 chr11 55550973 55551290 -93232182 - MLT1J2 LTR MaLR -57 393 7 1785 149 0 7 chr11 55552904 55553200 -93230272 + AluSq SINE Alu 1 294 -19 302 210 61 140 chr11 55553283 55553512 -93229960 - L2 LINE L2 -1 3312 3102 * 867 275 82 48 chr11 55553506 55553906 -93229566 - L2 LINE L2 -456 2858 2445 859 282 70 12 chr11 55554630 55554871 -93228601 + MIR SINE MIR 8 262 0 376 278 19 28 chr11 55554867 55554975 -93228497 - MIR SINE MIR -105 157 51 * 736 238 216 58 chr11 55555032 55555520 -93227952 + MLT1H1 LTR MaLR 1 555 0 2067 128 0 0 chr11 55555974 55556272 -93227200 + AluSq SINE Alu 1 298 -15 3539 124 13 9 chr11 55556848 55557373 -93226099 + MER1A DNA MER1_type 1 527 0 274 316 82 10 chr11 55557734 55557832 -93225640 + L2 LINE L2 3168 3272 0 409 269 224 13 chr11 55557921 55558077 -93225395 - MER5A DNA MER1_type 0 189 1 299 350 91 44 chr11 55558586 55559017 -93224455 - L2 LINE L2 -5 3267 2817 275 354 21 0 chr11 55559156 55559252 -93224220 - L2 LINE L2 0 3272 3175 348 347 87 0 chr11 55559330 55559480 -93223992 + MIR SINE MIR 80 242 -20 278 290 0 0 chr11 55559495 55559564 -93223908 + MIR3 SINE MIR 125 193 -15 422 338 64 14 chr11 55559937 55560156 -93223316 - MIR SINE MIR 0 262 33 435 303 0 15 chr11 55561007 55561139 -93222333 + MIR3 SINE MIR 73 202 -6 374 188 235 54 chr11 55561147 55561296 -93222176 + MIR3 SINE MIR 15 190 -18 367 241 68 43 chr11 55561362 55561524 -93221948 + L2 LINE L2 2548 2713 -601 1580 167 0 31 chr11 55561524 55561818 -93221654 + AluJo SINE Alu 1 285 -27 989 202 28 65 chr11 55562324 55562572 -93220900 + MIR SINE MIR 8 246 -16 504 325 41 33 chr11 55562797 55563040 -93220432 + Charlie8 DNA MER1_type 21 265 -2152 769 155 0 9 chr11 55563202 55563318 -93220154 - FLAM_C SINE Alu -27 116 2 1523 91 178 8 chr11 55563790 55564054 -93219418 + AluSq SINE Alu 1 305 0 227 282 57 40 chr11 55564125 55564249 -93219223 + MIR3 SINE MIR 63 188 -20 275 238 0 32 chr11 55566543 55566606 -93216866 + MIR SINE MIR 87 147 -61 429 54 0 0 chr11 55568943 55568999 -93214473 + (TCCA)n Simple_repeat Simple_repeat 3 58 0 277 293 0 13 chr11 55569106 55569181 -93214291 + MER5B DNA MER1_type 26 99 -79 710 234 18 69 chr11 55569533 55569751 -93213721 - MIR SINE MIR -41 221 15 224 136 34 34 chr11 55569890 55569949 -93213523 + GA-rich Low_complexity Low_complexity 1 59 0 476 207 11 17 chr11 55569961 55570140 -93213332 + GA-rich Low_complexity Low_complexity 2 179 0 418 174 28 7 chr11 55570157 55570301 -93213171 + GA-rich Low_complexity Low_complexity 1 147 0 634 166 29 0 chr11 55570332 55570507 -93212965 + GA-rich Low_complexity Low_complexity 1 180 0 269 198 10 0 chr11 55570521 55570617 -93212855 + GA-rich Low_complexity Low_complexity 2 98 0 212 264 0 0 chr11 55570868 55570921 -93212551 + (TTCA)n Simple_repeat Simple_repeat 2 54 0 266 345 159 7 chr11 55570921 55571066 -93212406 - L2 LINE L2 0 3272 3106 243 125 0 0 chr11 55571440 55571480 -93211992 + (T)n Simple_repeat Simple_repeat 1 40 0 356 252 17 61 chr11 55571942 55572057 -93211415 - L2 LINE L2 0 3313 3204 * 486 220 6 115 chr11 55572054 55572236 -93211236 - MIR3 SINE MIR -34 174 13 1829 142 20 102 chr11 55572357 55572751 -93210721 - L1MC3 LINE L1 -8 7777 7416 207 321 48 36 chr11 55572776 55572860 -93210612 - L2 LINE L2 -35 3237 3153 194 289 0 19 chr11 55573421 55573473 -93209999 + L2 LINE L2 3221 3271 -1 554 184 0 10 chr11 55574180 55574283 -93209189 + AluSg/x SINE Alu 200 301 -9 2426 132 0 5 chr11 55575062 55575434 -93208038 - L1PB1 LINE L1 0 6151 5782 247 292 0 0 chr11 55575452 55575541 -93207931 - L1MC4 LINE L1 -1339 6703 6615 * 273 278 0 0 chr11 55575466 55575556 -93207916 + L1MC4 LINE L1 6614 6703 -1339 273 222 0 0 chr11 55575556 55575619 -93207853 + (TA)n Simple_repeat Simple_repeat 2 64 0 3899 80 2 2 chr11 55575619 55576157 -93207315 - L1P5 LINE L1 -360 5791 5254 335 309 188 7 chr11 55576217 55576366 -93207106 - MER5A DNA MER1_type 0 189 14 294 338 15 29 chr11 55576409 55576545 -93206927 + MIR SINE MIR 123 256 -6 27 0 0 0 chr11 55576820 55576847 -93206625 + AT_rich Low_complexity Low_complexity 1 27 0 313 298 19 0 chr11 55576954 55577058 -93206414 + MIR3 SINE MIR 55 160 -48 2085 313 151 39 chr11 55577463 55578738 -93204734 - L2 LINE L2 0 3313 2182 1688 142 0 0 chr11 55578738 55578985 -93204487 + AluSx SINE Alu 35 281 -31 427 198 0 47 chr11 55578911 55578985 -93204487 + AluSg/x SINE Alu 208 302 -10 271 0 0 0 chr11 55578985 55579015 -93204457 + (CAAA)n Simple_repeat Simple_repeat 1 124 0 2085 313 151 39 chr11 55579015 55580215 -93203257 - L2 LINE L2 -1131 2182 535 427 198 0 47 chr11 55579015 55579026 -93204446 + AluSg/x SINE Alu 302 312 0 * 380 272 68 52 chr11 55580215 55580406 -93203066 - MER91A DNA MER1_type -2 194 1 2085 313 151 39 chr11 55580406 55580482 -93202990 - L2 LINE L2 -2778 535 469 508 247 82 19 chr11 55580451 55580609 -93202863 - MIR3 SINE MIR -23 185 18 * 544 256 39 39 chr11 55580617 55580797 -93202675 + MARNA DNA Mariner 31 210 -376 319 185 33 54 chr11 55581120 55581212 -93202260 - LTR67 LTR ERVL -29 528 439 552 287 61 49 chr11 55581293 55581540 -93201932 - LTR67 LTR ERVL -258 299 50 254 254 48 0 chr11 55582202 55582265 -93201207 + MIR SINE MIR 111 176 -86 193 331 103 22 chr11 55582401 55582585 -93200887 - L2 LINE L2 -247 3025 2827 512 329 67 24 chr11 55582853 55583063 -93200409 - MIR SINE MIR -41 221 3 2881 62 3 3 chr11 55583414 55583783 -93199689 - L1PB1 LINE L1 -1 6150 5782 223 143 0 41 chr11 55583783 55583832 -93199640 + (TA)n Simple_repeat Simple_repeat 1 47 0 342 224 31 31 chr11 55583832 55583930 -93199542 + L1MC4 LINE L1 6604 6701 -1341 1360 94 5 42 chr11 55583938 55584151 -93199321 - L1P5 LINE L1 -360 5791 5587 402 307 68 11 chr11 55584252 55584428 -93199044 + MIR SINE MIR 26 211 -51 548 280 27 74 chr11 55585395 55585652 -93197820 - MIR SINE MIR -17 245 1 957 87 16 0 chr11 55586097 55586240 -93197232 + L1M1 LINE L1 5478 5623 -528 327 193 9 73 chr11 55586360 55586387 -93197085 + Charlie5 DNA MER1_type 2523 2550 -74 2095 136 0 0 chr11 55586387 55586696 -93196776 - AluSx SINE Alu -3 309 1 327 193 9 73 chr11 55586696 55586777 -93196695 + Charlie5 DNA MER1_type 2550 2624 0 207 222 0 56 chr11 55586972 55587026 -93196446 - MIR SINE MIR 0 262 212 221 239 11 15 chr11 55587042 55587139 -93196333 + MIR SINE MIR 18 149 -113 385 281 107 31 chr11 55587255 55587451 -93196021 - MIR SINE MIR -24 238 28 200 222 0 19 chr11 55587734 55587774 -93195698 + (TAA)n Simple_repeat Simple_repeat 3 43 -12 3732 49 0 0 chr11 55587774 55588225 -93195247 + L1PA8 LINE L1 5709 6159 -13 200 222 0 19 chr11 55588225 55588238 -93195234 + (TAA)n Simple_repeat Simple_repeat 43 55 0 231 185 0 56 chr11 55588238 55588292 -93195180 - MIR SINE MIR 0 262 212 251 296 120 32 chr11 55588371 55588496 -93194976 + MIR SINE MIR 117 252 -10 513 271 23 95 chr11 55588501 55588722 -93194750 - MIR SINE MIR -57 205 1 180 0 0 0 chr11 55589743 55589763 -93193709 + (T)n Simple_repeat Simple_repeat 1 20 0 184 290 140 20 chr11 55590246 55590346 -93193126 - MIR SINE MIR -60 148 37 * 210 345 84 21 chr11 55590342 55590484 -93192988 - L2 LINE L2 -4 3268 3118 505 308 73 34 chr11 55590996 55591230 -93192242 - L2 LINE L2 -420 2894 2652 1030 180 10 39 chr11 55591243 55591449 -93192023 - MSTD LTR MaLR 0 396 197 237 296 254 0 chr11 55591453 55591622 -93191850 - L2 LINE L2 -675 2639 2428 1733 178 9 107 chr11 55592165 55592604 -93190868 + MSTD LTR MaLR 1 396 0 538 290 99 29 chr11 55592615 55592887 -93190585 + MLT1J LTR MaLR 52 342 -169 778 304 57 51 chr11 55593030 55593266 -93190206 - L2 LINE L2 -941 2373 2140 1708 273 41 34 chr11 55593266 55593855 -93189617 + MLT1E LTR MaLR 1 593 0 778 304 57 51 chr11 55593855 55593956 -93189516 - L2 LINE L2 -1174 2140 2041 2288 168 38 14 chr11 55593956 55594378 -93189094 - MSTB1 LTR MaLR 0 432 1 778 304 57 51 chr11 55594378 55594529 -93188943 - L2 LINE L2 -1273 2041 1881 6724 225 27 46 chr11 55594555 55596421 -93187051 + L1M4b LINE L1 90 1911 -4944 234 0 0 0 chr11 55596421 55596447 -93187025 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 913 236 58 0 chr11 55596454 55596662 -93186810 - AluJo SINE Alu -91 221 2 942 242 51 10 chr11 55596662 55596955 -93186517 + L1M4b LINE L1 1904 2208 -4751 * 4178 157 41 30 chr11 55596954 55597312 -93186160 + L1MB8 LINE L1 5290 5643 -535 1924 189 19 8 chr11 55597312 55597671 -93185801 + MLT1A1 LTR MaLR 3 365 0 4178 157 41 30 chr11 55597671 55598139 -93185333 + L1MB8 LINE L1 5643 6125 -53 1082 106 56 0 chr11 55598135 55598296 -93185176 - L1PA15 LINE L1 -613 5553 5384 * 3318 128 98 2 chr11 55598296 55598840 -93184632 + L1PA15 LINE L1 5558 6158 -7 2066 101 17 0 chr11 55598842 55599130 -93184342 + AluSx SINE Alu 1 293 -19 198 0 0 0 chr11 55599230 55599252 -93184220 + (A)n Simple_repeat Simple_repeat 1 22 0 274 331 16 41 chr11 55599279 55599400 -93184072 - MER5A DNA MER1_type -51 138 21 272 320 109 23 chr11 55599480 55599608 -93183864 - MIR SINE MIR -76 186 48 388 314 163 0 chr11 55599612 55599784 -93183688 + MIR SINE MIR 13 212 -50 1804 157 30 0 chr11 55599924 55600223 -93183249 - AluJo SINE Alu -4 308 1 329 245 104 9 chr11 55600455 55600561 -93182911 - MIR SINE MIR -13 249 134 241 336 68 34 chr11 55600561 55600707 -93182765 - MIR SINE MIR -50 212 62 561 279 37 35 chr11 55601060 55601311 -93182161 + MIR SINE MIR 2 258 -4 283 309 99 17 chr11 55602506 55602687 -93180785 + MIR3 SINE MIR 5 200 -8 428 289 27 34 chr11 55603134 55603283 -93180189 + MIR3 SINE MIR 3 150 -58 275 285 92 63 chr11 55604062 55604411 -93179061 - L2 LINE L2 -194 3078 2714 189 0 0 0 chr11 55604411 55604432 -93179040 + (TA)n Simple_repeat Simple_repeat 2 22 0 327 49 0 0 chr11 55606784 55606825 -93176647 + (CA)n Simple_repeat Simple_repeat 1 41 0 588 266 53 72 chr11 55607146 55607179 -93176293 - L2 LINE L2 0 3313 3281 2134 101 0 0 chr11 55607179 55607476 -93175996 + AluSq SINE Alu 1 297 -16 588 266 53 72 chr11 55607476 55607746 -93175726 - L2 LINE L2 -32 3281 3016 296 226 36 12 chr11 55607755 55607839 -93175633 + MIR3 SINE MIR 73 158 -50 1718 107 92 4 chr11 55608222 55608511 -93174961 + AluSq SINE Alu 1 312 0 188 208 94 19 chr11 55608663 55608716 -93174756 + MER5A DNA MER1_type 33 89 -100 283 214 68 68 chr11 55609568 55609685 -93173787 - L3 LINE CR1 -56 1521 1405 321 305 136 34 chr11 55609716 55609893 -93173579 + MIR SINE MIR 2 196 -66 2127 111 7 0 chr11 55609971 55610278 -93173194 + AluSg1 SINE Alu 1 309 0 1020 190 40 32 chr11 55610362 55610615 -93172857 + MER33 DNA MER1_type 1 255 -69 978 130 68 11 chr11 55610721 55610898 -93172574 + L1MA4A LINE L1 5652 5838 -465 1559 77 54 5 chr11 55610909 55611130 -93172342 - L1PA11 LINE L1 -2 6172 5941 2104 114 0 0 chr11 55611165 55611455 -93172017 + AluSc SINE Alu 1 290 -19 198 192 0 0 chr11 55612504 55612556 -93170916 + (TG)n Simple_repeat Simple_repeat 1 52 0 780 148 0 0 chr11 55612577 55612746 -93170726 + (TG)n Simple_repeat Simple_repeat 1 169 0 230 308 62 0 chr11 55613446 55613511 -93169961 + L2 LINE L2 3151 3219 -53 344 297 21 62 chr11 55613903 55614048 -93169424 + MIR SINE MIR 48 186 -76 2298 122 30 11 chr11 55614493 55614761 -93168711 - Tigger2 DNA MER2_type -45 2673 2395 1630 111 13 0 chr11 55614761 55614986 -93168486 - MER30 DNA MER1_type 0 230 3 2298 122 30 11 chr11 55614986 55615087 -93168385 - Tigger2 DNA MER2_type -323 2395 2297 228 247 54 75 chr11 55615143 55615236 -93168236 - MIR SINE MIR -60 202 112 1106 185 0 32 chr11 55616177 55616393 -93167079 - MER3 DNA MER1_type 0 209 1 696 196 14 34 chr11 55616430 55616578 -93166894 - MER5B DNA MER1_type -17 161 17 2092 127 0 0 chr11 55616627 55616927 -93166545 + AluSc SINE Alu 1 300 -9 374 242 77 99 chr11 55617094 55617204 -93166268 + MER45A DNA AcHobo 1 107 -1474 1769 128 25 14 chr11 55617204 55617514 -93165958 - AluJb SINE Alu 0 312 1 374 242 77 99 chr11 55617514 55617585 -93165887 + MER45A DNA AcHobo 107 178 0 476 247 95 65 chr11 55617769 55617940 -93165532 + MLT1I LTR MaLR 26 191 -218 1615 168 21 3 chr11 55617940 55618231 -93165241 + AluJo SINE Alu 1 296 -16 476 247 95 65 chr11 55618231 55618356 -93165116 + MLT1I LTR MaLR 191 359 -50 1885 132 55 0 chr11 55718873 55719146 -93064326 + AluSx SINE Alu 3 290 -22 824 278 179 18 chr11 55719244 55719636 -93063836 + L2 LINE L2 2854 3308 -5 250 222 0 0 chr11 55719793 55719847 -93063625 - AluSp SINE Alu -133 170 117 510 289 14 0 chr11 55719948 55720090 -93063382 - L2 LINE L2 -626 2688 2545 917 129 19 0 chr11 55720606 55720761 -93062711 + L1MB1 LINE L1 5968 6125 -43 2001 110 48 0 chr11 55720761 55721034 -93062438 + AluSc SINE Alu 1 286 -23 1900 169 13 3 chr11 55721050 55721352 -93062120 + AluJo SINE Alu 1 305 -7 317 254 9 27 chr11 55721376 55721486 -93061986 + L1MC5 LINE L1 7806 7913 -48 1804 169 14 14 chr11 55721498 55721794 -93061678 + AluJo SINE Alu 11 306 -6 180 256 0 0 chr11 55721843 55721882 -93061590 - L2 LINE L2 -17 3296 3258 560 185 51 6 chr11 55721977 55722134 -93061338 - L1MD3 LINE L1 0 7995 7832 * 1055 165 59 43 chr11 55722132 55722158 -93061314 - L1MD2 LINE L1 -207 6152 6128 2256 99 0 26 chr11 55722158 55722470 -93061002 - AluSc SINE Alu -5 304 1 2218 83 21 3 chr11 55722470 55722759 -93060713 - AluSg SINE Alu -15 295 1 1055 165 59 43 chr11 55722759 55722985 -93060487 - L1MD2 LINE L1 -230 6129 5895 2192 75 0 45 chr11 55723094 55723386 -93060086 - AluSq SINE Alu -34 279 1 2035 205 29 22 chr11 55723425 55723917 -93059555 + L1ME3 LINE L1 5667 6161 -1 741 226 11 54 chr11 55724440 55724626 -93058846 - MER5B DNA MER1_type 0 178 1 330 261 130 43 chr11 55725260 55725398 -93058074 + MIR3 SINE MIR 13 162 -46 534 298 50 20 chr11 55725955 55726153 -93057319 - MIR SINE MIR -46 216 13 455 322 44 0 chr11 55726162 55726342 -93057130 + MIR SINE MIR 49 236 -26 799 255 120 0 chr11 55726418 55726626 -93056846 + MIR SINE MIR 18 250 -12 261 83 0 0 chr11 55727216 55727252 -93056220 + (TA)n Simple_repeat Simple_repeat 1 36 0 331 213 125 0 chr11 55727252 55727332 -93056140 - L2 LINE L2 -12 3301 3212 305 258 142 8 chr11 55727350 55727369 -93056103 + MIR SINE MIR 13 28 -234 2356 90 3 0 chr11 55727369 55727658 -93055814 + AluSx SINE Alu 1 290 -22 305 258 142 8 chr11 55727658 55727758 -93055714 + MIR SINE MIR 28 148 -114 205 273 18 0 chr11 55727766 55727821 -93055651 - MIR SINE MIR -112 150 95 780 286 46 5 chr11 55728037 55728254 -93055218 + MIR SINE MIR 22 247 -15 296 265 59 118 chr11 55728595 55728969 -93054503 - L2 LINE L2 -338 2976 2625 766 283 94 0 chr11 55728999 55729222 -93054250 - MIR SINE MIR -12 250 7 2210 123 3 0 chr11 55729423 55729724 -93053748 + AluSx SINE Alu 1 302 -10 329 240 19 48 chr11 55729792 55729849 -93053623 + Charlie8 DNA MER1_type 92 146 -2271 2137 133 3 0 chr11 55729849 55730149 -93053323 + AluSx SINE Alu 1 301 -11 329 240 19 48 chr11 55730149 55730195 -93053277 + Charlie8 DNA MER1_type 146 192 -2225 1263 239 79 85 chr11 55730362 55730959 -93052513 + MLT1E LTR MaLR 1 593 0 300 200 0 225 chr11 55731026 55731084 -93052388 - L2 LINE L2 -37 3276 3257 1792 168 6 16 chr11 55731084 55731399 -93052073 + AluJo SINE Alu 1 312 0 300 200 0 225 chr11 55731399 55731460 -93052012 - L2 LINE L2 -56 3257 3184 2274 122 3 0 chr11 55731623 55731927 -93051545 - AluSx SINE Alu -2 310 6 830 143 0 8 chr11 55732043 55732162 -93051310 + FLAM_C SINE Alu 1 118 -15 243 359 26 8 chr11 55732191 55732308 -93051164 - L2 LINE L2 -181 3091 2973 181 298 0 18 chr11 55732321 55732378 -93051094 - L2 LINE L2 -49 3223 3168 1932 128 14 14 chr11 55732536 55732818 -93050654 + AluSx SINE Alu 3 284 -28 1078 112 7 0 chr11 55732818 55732849 -93050623 + AluSq SINE Alu 3 316 0 509 310 153 18 chr11 55732970 55733421 -93050051 - L2 LINE L2 -474 2840 2329 291 269 51 0 chr11 55733787 55733865 -93049607 + L2 LINE L2 3141 3222 -50 186 71 0 0 chr11 55733874 55733902 -93049570 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 3554 131 8 21 chr11 55733904 55733958 -93049514 - L1MB7 LINE L1 -19 6165 6112 2022 153 3 6 chr11 55733958 55734271 -93049201 + AluJb SINE Alu 1 312 0 3554 131 8 21 chr11 55734271 55734840 -93048632 - L1MB7 LINE L1 -72 6112 5550 2497 87 0 0 chr11 55734861 55735159 -93048313 - AluSx SINE Alu -14 298 1 422 302 81 0 chr11 55735212 55735361 -93048111 - MIR SINE MIR -96 166 6 1816 163 3 38 chr11 55735545 55735865 -93047607 - AluSx SINE Alu -3 309 1 1640 94 65 45 chr11 55735929 55736216 -93047256 - L1PA8A LINE L1 -12 6119 5824 1937 115 4 0 chr11 55736216 55736469 -93047003 - AluSp SINE Alu -59 254 1 1640 94 65 45 chr11 55736469 55736490 -93046982 - L1PA8A LINE L1 -307 5824 5805 396 349 53 72 chr11 55736741 55737048 -93046424 - L2 LINE L2 -1 3271 2971 2024 139 6 25 chr11 55737048 55737185 -93046287 + AluSx SINE Alu 1 139 -173 2441 94 0 3 chr11 55737185 55737493 -93045979 + AluSg SINE Alu 1 307 -3 2024 139 6 25 chr11 55737493 55737672 -93045800 + AluSx SINE Alu 139 311 -1 396 349 53 72 chr11 55737672 55737725 -93045747 - L2 LINE L2 -301 2971 2918 308 302 17 43 chr11 55737740 55737856 -93045616 - L2 LINE L2 -9 3304 3192 1892 128 41 14 chr11 55738030 55738320 -93045152 - AluJb SINE Alu -6 306 9 1974 154 3 3 chr11 55738828 55739126 -93044346 - AluJb SINE Alu -14 298 1 1016 68 0 0 chr11 55739153 55739285 -93044187 - L1PA10 LINE L1 -5 6163 6032 298 253 81 40 chr11 55739356 55739455 -93044017 - MIR SINE MIR -66 142 40 477 271 95 27 chr11 55739470 55739691 -93043781 - MIR SINE MIR -3 259 24 399 275 53 31 chr11 55742539 55742720 -93040752 + MIR SINE MIR 17 203 -59 625 125 0 0 chr11 55743181 55743277 -93040195 - AluSx SINE Alu -14 295 200 1067 143 0 0 chr11 55743277 55743431 -93040041 - AluSx SINE Alu -158 154 1 2244 130 25 62 chr11 55743649 55744132 -93039340 - L1MB8 LINE L1 -6 6172 5708 744 193 14 0 chr11 55744135 55744275 -93039197 + FRAM SINE Alu 1 140 -36 1903 156 0 19 chr11 55744291 55744599 -93038873 - AluJo SINE Alu -10 302 1 486 148 156 44 chr11 55744601 55744736 -93038736 - L1MB8 LINE L1 -493 5691 5542 2153 90 38 3 chr11 55744742 55745030 -93038442 - AluSq SINE Alu -15 298 1 1610 185 55 37 chr11 55745049 55745097 -93038375 - L1M3 LINE L1 -629 5555 5509 489 71 191 0 chr11 55745097 55745181 -93038291 - HY3 scRNA scRNA -1 100 1 1610 185 55 37 chr11 55745181 55745255 -93038217 - L1M3 LINE L1 -675 5509 5438 2544 84 0 3 chr11 55745255 55745565 -93037907 - AluSx SINE Alu -3 309 1 1610 185 55 37 chr11 55745565 55745983 -93037489 - L1M3 LINE L1 -746 5438 5029 945 136 0 0 chr11 55745983 55746137 -93037335 + (TTCC)n Simple_repeat Simple_repeat 3 156 0 2285 90 0 4 chr11 55746146 55746424 -93037048 - AluSc SINE Alu -32 277 1 1610 185 55 37 chr11 55746424 55746510 -93036962 - L1M3 LINE L1 -1162 5022 4963 1933 158 16 0 chr11 55746593 55746897 -93036575 - AluSx SINE Alu -3 309 1 1027 188 21 0 chr11 55746913 55747099 -93036373 - AluJo SINE Alu -1 311 122 2419 103 0 0 chr11 55747438 55747748 -93035724 - AluSx SINE Alu -1 311 2 318 233 33 22 chr11 55747748 55747838 -93035634 + MIR SINE MIR 102 192 -70 203 331 86 63 chr11 55747842 55748017 -93035455 + MIR SINE MIR 13 191 -71 1704 181 3 31 chr11 55748061 55748240 -93035232 - AluJb SINE Alu 0 312 143 2138 127 7 7 chr11 55748240 55748548 -93034924 - AluSx SINE Alu -4 308 1 1704 181 3 31 chr11 55748548 55748688 -93034784 - AluJb SINE Alu -169 143 1 648 232 21 57 chr11 55748878 55749072 -93034400 - MIR SINE MIR -47 215 29 1164 163 6 0 chr11 55749185 55749363 -93034109 - AluJb SINE Alu -12 300 122 1783 196 0 0 chr11 55749383 55749674 -93033798 - AluJb SINE Alu -21 291 1 276 286 184 0 chr11 55749812 55749959 -93033513 - MIR SINE MIR -77 185 12 262 302 32 0 chr11 55749959 55750085 -93033387 + MER113 DNA MER1_type? 8 137 -384 225 241 19 0 chr11 55750134 55750188 -93033284 + (TA)n Simple_repeat Simple_repeat 1 55 0 2194 126 0 16 chr11 55750191 55750508 -93032964 - AluSx SINE Alu 0 312 1 294 308 138 6 chr11 55751051 55751210 -93032262 + MIR SINE MIR 13 192 -70 495 251 144 10 chr11 55751428 55751517 -93031955 - Charlie8 DNA MER1_type -2151 266 190 2538 65 0 13 chr11 55751517 55751826 -93031646 - AluY SINE Alu -6 305 1 495 251 144 10 chr11 55751826 55751931 -93031541 - Charlie8 DNA MER1_type -2227 190 46 211 298 18 0 chr11 55752034 55752091 -93031381 + L2 LINE L2 3214 3271 -1 2014 120 3 74 chr11 55752115 55752441 -93031031 + AluJb SINE Alu 1 303 -9 2083 159 0 9 chr11 55752835 55753150 -93030322 - AluJb SINE Alu 0 312 1 408 240 135 42 chr11 55753291 55753483 -93029989 - MIR SINE MIR -20 242 33 298 148 0 19 chr11 55753760 55753814 -93029658 + MIR SINE MIR 210 262 0 793 181 0 0 chr11 55753871 55754004 -93029468 - FLAM_C SINE Alu 0 133 1 245 235 0 0 chr11 55755108 55755176 -93028296 + (TG)n Simple_repeat Simple_repeat 2 69 0 512 224 68 34 chr11 55755200 55755405 -93028067 - L2 LINE L2 -46 3267 3056 2373 76 3 7 chr11 55756381 55756683 -93026789 - AluSx SINE Alu -11 301 1 316 207 110 0 chr11 55757161 55757243 -93026229 + MIR3 SINE MIR 70 160 -48 186 43 0 0 chr11 55757252 55757275 -93026197 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 2135 118 0 0 chr11 55757285 55757565 -93025907 - AluSx SINE Alu -32 280 1 280 267 59 15 chr11 55757618 55757753 -93025719 + MER103 DNA DNA 14 154 -12 265 364 69 12 chr11 55758056 55758303 -93025169 + L2 LINE L2 2545 2805 -509 203 257 43 14 chr11 55758353 55758423 -93025049 - MIR SINE MIR -91 117 46 182 186 47 0 chr11 55759403 55759446 -93024026 + MIR SINE MIR 105 149 -113 188 260 20 0 chr11 55759799 55759849 -93023623 + MIR SINE MIR 95 145 -63 1675 183 10 0 chr11 55759875 55760175 -93023297 - AluJo SINE Alu -9 303 1 1701 111 127 12 chr11 55760235 55760513 -93022959 - AluSg SINE Alu 0 307 1 312 64 0 0 chr11 55760525 55760572 -93022900 - MADE1 DNA Mariner 0 80 34 2375 81 3 3 chr11 55760572 55760870 -93022602 + AluSp SINE Alu 1 298 -15 333 324 151 0 chr11 55761108 55761293 -93022179 - MIR SINE MIR -32 230 18 216 288 41 0 chr11 55761823 55761896 -93021576 - MIR SINE MIR -74 188 113 337 283 71 48 chr11 55762193 55762403 -93021069 + MIR SINE MIR 14 222 -40 499 209 269 22 chr11 55762460 55762642 -93020830 + MIR SINE MIR 15 241 -21 2192 109 0 39 chr11 55762648 55762960 -93020512 - AluSg SINE Alu -10 300 1 988 117 13 39 chr11 55762963 55763117 -93020355 - FRAM SINE Alu -6 170 21 819 90 5 58 chr11 55763257 55763445 -93020027 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 519 105 35 58 chr11 55763447 55763618 -93019854 + CT-rich Low_complexity Low_complexity 4 170 0 200 40 0 0 chr11 55763620 55763645 -93019827 + (TC)n Simple_repeat Simple_repeat 1 25 0 2265 98 3 7 chr11 55763645 55763942 -93019530 - AluSx SINE Alu -16 296 1 437 132 0 0 chr11 55763948 55764016 -93019456 + MSTA LTR MaLR 361 428 0 285 309 72 0 chr11 55764225 55764322 -93019150 + MIR SINE MIR 96 199 -63 661 257 47 85 chr11 55764442 55764488 -93018984 - MLT1L LTR MaLR -4 611 565 2385 98 3 0 chr11 55764488 55764793 -93018679 + AluSg SINE Alu 1 306 -4 661 257 47 85 chr11 55764793 55765210 -93018262 - MLT1L LTR MaLR -50 565 125 1721 166 6 68 chr11 55765430 55765756 -93017716 - AluJb SINE Alu -6 306 1 226 333 100 0 chr11 55765756 55765846 -93017626 - L2 LINE L2 -3 3269 3171 2532 81 0 0 chr11 55765884 55766225 -93017247 - AluSg SINE Alu 0 341 1 711 262 76 55 chr11 55766231 55766506 -93016966 + L2 LINE L2 3031 3311 -2 310 260 83 10 chr11 55766681 55766777 -93016695 + MIR SINE MIR 96 198 -64 646 184 0 9 chr11 55766922 55767036 -93016436 + AluJb SINE Alu 174 286 -26 484 146 29 58 chr11 55767039 55767167 -93016305 - MER93b LTR ERV1 -164 209 86 3368 128 45 7 chr11 55767167 55767448 -93016024 + Tigger3b DNA MER2_type 1 270 -2758 2309 107 0 10 chr11 55767448 55767756 -93015716 - AluSx SINE Alu -7 305 1 3368 128 45 7 chr11 55767756 55768051 -93015421 + Tigger3b DNA MER2_type 270 599 -632 1521 153 13 13 chr11 55768053 55768289 -93015183 + AluJb SINE Alu 3 238 -74 264 293 179 0 chr11 55768389 55768529 -93014943 + MIR SINE MIR 77 241 -21 2176 112 0 39 chr11 55768535 55768847 -93014625 - AluSg SINE Alu -10 300 1 1181 134 11 21 chr11 55768850 55769037 -93014435 - AluJo SINE Alu -3 309 125 223 92 77 0 chr11 55769037 55769102 -93014370 + (TA)n Simple_repeat Simple_repeat 2 71 0 331 233 8 76 chr11 55769105 55769163 -93014309 + L1MC4 LINE L1 1998 2058 -6264 828 120 0 24 chr11 55769163 55769288 -93014184 - FLAM_A SINE Alu -11 122 1 331 233 8 76 chr11 55769288 55769386 -93014086 + L1MC4 LINE L1 2058 6999 -1323 726 147 9 0 chr11 55769387 55769503 -93013969 - AluJo SINE Alu -190 122 6 347 223 88 24 chr11 55770429 55770570 -93012902 - MIR SINE MIR -32 176 66 521 212 23 38 chr11 55770592 55770724 -93012748 - MIR SINE MIR -66 196 67 1096 255 47 14 chr11 55770790 55771259 -93012213 - MLT1F1 LTR MaLR 0 567 2 1194 43 14 0 chr11 55771268 55771407 -93012065 - AluSg/x SINE Alu -10 300 160 354 239 71 76 chr11 55771850 55772034 -93011438 - MER5A DNA MER1_type -3 186 4 359 311 102 31 chr11 55772776 55773030 -93010442 - L3 LINE CR1 -111 1466 1195 1290 295 71 17 chr11 55773213 55774075 -93009397 + L2 LINE L2 2404 3309 -4 225 346 87 0 chr11 55774082 55774186 -93009286 - MIR SINE MIR -87 175 63 2410 78 0 31 chr11 55774756 55775077 -93008395 - AluY SINE Alu 0 311 1 1662 194 0 29 chr11 55775080 55775390 -93008082 - AluJo SINE Alu -11 301 1 457 243 171 27 chr11 55775472 55775694 -93007778 - L3 LINE CR1 -47 1530 1277 272 289 266 0 chr11 55775710 55775883 -93007589 - MIR SINE MIR 0 262 44 200 241 19 0 chr11 55775901 55775955 -93007517 - L3 LINE CR1 -343 1234 1180 438 292 56 6 chr11 55777700 55777861 -93005611 - MIR SINE MIR -54 208 40 364 221 97 9 chr11 55779649 55779762 -93003710 - MER5A DNA MER1_type -7 182 60 585 120 0 0 chr11 55779958 55780050 -93003422 + (GGAA)n Simple_repeat Simple_repeat 1 92 0 375 219 12 80 chr11 55780388 55780554 -93002918 - MIR SINE MIR -53 209 61 413 339 83 44 chr11 55781326 55781736 -93001736 - L2 LINE L2 -433 2881 2456 309 292 10 10 chr11 55781828 55781924 -93001548 + MIR3 SINE MIR 89 184 -24 1394 147 0 18 chr11 55782753 55782971 -93000501 - AluSq SINE Alu -95 218 5 707 197 0 0 chr11 55782999 55783121 -93000351 - FLAM_A SINE Alu -11 122 1 681 271 26 21 chr11 55783445 55783637 -92999835 + MER91A DNA MER1_type 1 193 -3 27 29 0 0 chr11 55784032 55784066 -92999406 + AT_rich Low_complexity Low_complexity 1 34 0 21 71 0 0 chr11 55784947 55784989 -92998483 + GC_rich Low_complexity Low_complexity 1 42 0 433 304 58 0 chr11 55785606 55785777 -92997695 - MER5A DNA MER1_type 0 189 9 485 276 27 75 chr11 55785794 55785993 -92997479 + MIR SINE MIR 15 205 -3 216 143 0 0 chr11 55786001 55786043 -92997429 + (TTTTTG)n Simple_repeat Simple_repeat 4 45 0 467 265 40 20 chr11 55786061 55786212 -92997260 + MIR SINE MIR 90 243 -19 509 284 55 30 chr11 55786231 55786467 -92997005 + MIR SINE MIR 20 261 -1 204 253 27 40 chr11 55786770 55786845 -92996627 + MER5A DNA MER1_type 116 189 0 194 282 84 0 chr11 55786845 55786916 -92996556 - MIR3 SINE MIR -37 171 95 215 167 0 37 chr11 55787952 55788006 -92995466 + C-rich Low_complexity Low_complexity 1 52 0 494 274 8 0 chr11 55788215 55788339 -92995133 + MIR3 SINE MIR 81 205 -3 247 208 0 0 chr11 55788354 55788402 -92995070 - L2 LINE L2 -2 3270 3223 760 268 34 1 chr11 55788475 55788681 -92994791 - MIR SINE MIR -13 249 40 299 242 32 21 chr11 55788689 55788784 -92994688 + MIR SINE MIR 30 125 -137 668 284 39 5 chr11 55788807 55789011 -92994461 - MIR SINE MIR -4 258 48 1737 141 22 0 chr11 55789057 55789368 -92994104 + AluJb SINE Alu 1 317 0 2326 86 3 0 chr11 55789413 55789715 -92993757 + AluSx SINE Alu 4 306 -6 491 248 28 41 chr11 55789715 55789860 -92993612 + L2 LINE L2 3170 3312 -1 690 297 23 19 chr11 55790274 55790310 -92993162 - MIR SINE MIR -1 261 227 2166 123 0 0 chr11 55790310 55790611 -92992861 - AluSx SINE Alu -6 306 6 690 297 23 19 chr11 55790611 55790833 -92992639 - MIR SINE MIR -35 227 2 192 40 0 0 chr11 55790890 55790915 -92992557 + (TAG)n Simple_repeat Simple_repeat 2 26 0 535 259 93 89 chr11 55790930 55791022 -92992450 - MIR SINE MIR -8 254 164 2145 116 3 0 chr11 55791022 55791315 -92992157 + AluSx SINE Alu 1 294 -18 535 259 93 89 chr11 55791315 55791458 -92992014 - MIR SINE MIR -98 164 18 721 239 32 5 chr11 55791955 55792143 -92991329 - MIR SINE MIR -5 257 65 328 280 119 8 chr11 55792278 55792396 -92991076 + L2 LINE L2 3171 3301 -12 209 173 0 39 chr11 55792672 55792724 -92990748 + (TAA)n Simple_repeat Simple_repeat 3 52 0 278 280 9 51 chr11 55793112 55793350 -92990122 + GA-rich Low_complexity Low_complexity 1 227 0 1895 138 0 13 chr11 55794065 55794369 -92989103 + AluJo SINE Alu 11 310 -2 1191 132 73 5 chr11 55794597 55794802 -92988670 - MER20 DNA MER1_type 0 219 1 1808 163 0 16 chr11 55795080 55795265 -92988207 - AluJo SINE Alu -10 302 122 2519 45 0 16 chr11 55795265 55795578 -92987894 + AluY SINE Alu 1 308 -3 1808 163 0 16 chr11 55795578 55795699 -92987773 - AluJo SINE Alu -190 122 1 468 326 34 6 chr11 55796838 55797016 -92986456 - MIR3 SINE MIR -6 202 20 259 314 0 48 chr11 55797943 55798048 -92985424 - MIR3 SINE MIR -7 201 102 365 340 27 21 chr11 55798267 55798455 -92985017 - MIR SINE MIR -21 241 53 205 293 0 17 chr11 55799670 55799728 -92983744 + C-rich Low_complexity Low_complexity 2 58 0 302 297 0 42 chr11 55800016 55800134 -92983338 + C-rich Low_complexity Low_complexity 3 115 0 195 100 0 0 chr11 55800897 55800927 -92982545 + (CGGGG)n Simple_repeat Simple_repeat 1 30 0 239 233 0 50 chr11 55802288 55802348 -92981124 + L2 LINE L2 3244 3300 -13 372 255 5 53 chr11 55802470 55802658 -92980814 + CT-rich Low_complexity Low_complexity 2 180 0 192 339 62 0 chr11 55803389 55803454 -92980018 + L2 LINE L2 3185 3253 -60 294 237 203 51 chr11 55803622 55803740 -92979732 + MIR3 SINE MIR 11 146 -62 319 318 101 31 chr11 55804425 55804554 -92978918 + MIR SINE MIR 7 144 -118 679 189 0 16 chr11 55804558 55804676 -92978796 + FLAM_C SINE Alu 2 119 -193 252 86 0 0 chr11 55804676 55804711 -92978761 + (CAAT)n Simple_repeat Simple_repeat 2 36 0 369 93 0 0 chr11 55804792 55804846 -92978626 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 241 297 68 17 chr11 55804855 55804973 -92978499 + MIR SINE MIR 139 262 0 1602 157 30 37 chr11 55805053 55805352 -92978120 - AluJb SINE Alu -14 298 2 337 318 38 0 chr11 55805514 55805646 -92977826 + MIR3 SINE MIR 38 174 -34 467 45 0 15 chr11 55806102 55806169 -92977303 + (TATG)n Simple_repeat Simple_repeat 2 67 0 1932 117 33 0 chr11 55806169 55806443 -92977029 - AluSg SINE Alu -27 283 1 303 308 169 0 chr11 55806456 55806586 -92976886 - MIR SINE MIR -4 258 107 1510 284 112 4 chr11 55806586 55806999 -92976473 + MER115 DNA AcHobo 2 476 -217 2258 88 3 0 chr11 55806999 55807295 -92976177 - AluSq SINE Alu -16 297 1 1510 284 112 4 chr11 55807295 55807363 -92976109 + MER115 DNA AcHobo 476 535 -158 231 288 41 14 chr11 55807537 55807610 -92975862 - MIR SINE MIR -149 113 39 265 317 58 0 chr11 55807740 55807860 -92975612 + L2 LINE L2 3136 3262 -10 533 335 56 21 chr11 55808608 55808948 -92974524 + L1ME LINE L1 5312 5663 -458 229 310 28 21 chr11 55809005 55809147 -92974325 + L1ME LINE L1 5755 5897 -224 740 164 0 0 chr11 55809485 55809619 -92973853 - FLAM_A SINE Alu 0 139 6 785 166 0 183 chr11 55809643 55809878 -92973594 - 7SK RNA RNA 0 193 2 527 321 24 0 chr11 55809887 55810052 -92973420 - MIR SINE MIR -71 191 23 227 222 37 74 chr11 55810089 55810197 -92973275 + MER113 DNA MER1_type? 13 116 -405 799 299 28 12 chr11 55810580 55810831 -92972641 - MIR SINE MIR 0 262 8 1871 135 0 40 chr11 55810846 55811171 -92972301 - AluJo SINE Alu 0 312 1 835 117 16 0 chr11 55811172 55811300 -92972172 - L1MA4A LINE L1 -4 6299 6170 579 149 0 0 chr11 55811300 55811387 -92972085 - 5S rRNA rRNA -34 87 1 1209 81 16 0 chr11 55811388 55811573 -92971899 - L1MA4A LINE L1 -118 6185 5998 989 259 54 45 chr11 55811660 55811986 -92971486 + L1MC4a LINE L1 5502 5834 -1974 2166 109 3 3 chr11 55811986 55812288 -92971184 - AluSq SINE Alu -11 302 1 989 259 54 45 chr11 55812288 55812385 -92971087 + L1MC4a LINE L1 5834 5929 -1879 2295 82 0 7 chr11 55812728 55813031 -92970441 + AluSq SINE Alu 1 301 -12 12480 117 26 33 chr11 55813148 55813258 -92970214 - L1M1 LINE L1 -4264 3301 3192 2179 103 17 0 chr11 55813258 55813559 -92969913 - AluSp SINE Alu -7 306 1 12480 117 26 33 chr11 55813559 55813699 -92969773 - L1M1 LINE L1 -4373 3192 3053 2401 79 0 0 chr11 55813699 55814003 -92969469 - AluSq SINE Alu -9 304 1 12480 117 26 33 chr11 55814003 55814593 -92968879 - L1M1 LINE L1 -4512 3053 2460 2022 84 0 32 chr11 55814593 55814877 -92968595 - AluY SINE Alu -1 310 36 12480 117 26 33 chr11 55814877 55815009 -92968463 - L1M1 LINE L1 -5105 2460 2329 2100 118 30 0 chr11 55815009 55815313 -92968159 - AluSq SINE Alu 0 313 1 12480 117 26 33 chr11 55815313 55816445 -92967027 - L1M1 LINE L1 -5236 2329 1209 614 153 306 7 chr11 55816447 55816591 -92966881 - MER20 DNA MER1_type -32 187 1 639 209 72 7 chr11 55816705 55816858 -92966614 - MER103 DNA DNA -2 164 2 256 265 0 111 chr11 55817534 55817601 -92965871 + MIR SINE MIR 153 203 -59 2530 55 0 0 chr11 55817601 55817910 -92965562 + AluY SINE Alu 1 309 -2 256 265 0 111 chr11 55817910 55817959 -92965513 + MIR SINE MIR 203 256 -6 1957 137 7 0 chr11 55818897 55819190 -92964282 - AluSx SINE Alu -16 296 2 576 309 101 5 chr11 55819882 55820099 -92963373 - MIR SINE MIR -12 250 13 2154 125 0 0 chr11 55820142 55820446 -92963026 + AluSq SINE Alu 1 304 -9 424 194 186 16 chr11 55820520 55820649 -92962823 - MIR3 SINE MIR -42 166 16 2088 133 23 108 chr11 55820719 55820828 -92962644 - MSTB1 LTR MaLR 0 432 315 2155 103 7 3 chr11 55820828 55821130 -92962342 + AluSp SINE Alu 2 304 -9 2088 133 23 108 chr11 55821130 55821426 -92962046 - MSTB1 LTR MaLR -117 315 70 1691 137 70 3 chr11 55821426 55821711 -92961761 - AluSx SINE Alu 0 312 9 2088 133 23 108 chr11 55821711 55821776 -92961696 - MSTB1 LTR MaLR -362 70 1 1968 120 9 31 chr11 55821901 55822218 -92961254 - AluSp SINE Alu -3 310 1 227 196 39 0 chr11 55822223 55822274 -92961198 - MIR SINE MIR -171 91 39 262 186 0 0 chr11 55822274 55822317 -92961155 - Alu SINE Alu -257 43 1 329 250 71 0 chr11 55822322 55822406 -92961066 - MIR SINE MIR -171 91 2 2941 167 57 33 chr11 55822554 55822651 -92960821 - L1MB3 LINE L1 -2 6181 6088 1412 211 24 0 chr11 55822651 55822940 -92960532 + AluJo SINE Alu 1 296 -16 2941 167 57 33 chr11 55822940 55823507 -92959965 - L1MB3 LINE L1 -95 6088 5501 555 246 96 24 chr11 55823553 55823720 -92959752 - MIR3 SINE MIR -9 199 21 355 291 137 23 chr11 55824453 55824628 -92958844 - MIR SINE MIR -1 261 67 437 145 0 176 chr11 55824651 55824679 -92958793 + MER3 DNA MER1_type 102 133 -76 2122 109 10 0 chr11 55824679 55824973 -92958499 - AluSx SINE Alu -15 297 1 437 145 0 176 chr11 55824973 55825008 -92958464 + MER3 DNA MER1_type 133 133 -76 1732 170 0 3 chr11 55825008 55825308 -92958164 - AluJb SINE Alu -13 299 1 437 145 0 176 chr11 55825308 55825374 -92958098 + MER3 DNA MER1_type 133 209 0 272 182 0 0 chr11 55825339 55825383 -92958089 - MER3 DNA MER1_type -127 82 39 * 2155 108 0 0 chr11 55827057 55827384 -92956088 - AluSx SINE Alu 0 312 1 275 292 0 0 chr11 55827387 55827459 -92956013 - MIR SINE MIR -115 147 76 505 232 88 33 chr11 55827930 55828111 -92955361 - MIR SINE MIR -12 250 60 234 237 41 82 chr11 55828646 55828743 -92954729 - MIR3 SINE MIR -12 196 104 822 135 0 90 chr11 55828846 55829002 -92954470 + FLAM_C SINE Alu 2 143 0 2204 122 3 0 chr11 55829194 55829506 -92953966 + AluSq SINE Alu 1 313 0 1065 267 77 40 chr11 55829568 55829833 -92953639 - L2 LINE L2 0 3313 3026 2178 117 0 0 chr11 55829833 55830132 -92953340 - AluSx SINE Alu -13 299 1 1065 267 77 40 chr11 55830132 55830271 -92953201 - L2 LINE L2 -287 3026 2894 215 306 0 0 chr11 55830446 55830508 -92952964 - MIR SINE MIR -115 147 86 275 247 22 14 chr11 55830976 55831108 -92952364 - MIR SINE MIR -72 190 20 1820 167 0 3 chr11 55831376 55831669 -92951803 - AluJo SINE Alu -20 292 1 403 198 121 11 chr11 55831672 55831763 -92951709 + L2 LINE L2 3213 3313 0 198 0 0 0 chr11 55832810 55832832 -92950640 + (A)n Simple_repeat Simple_repeat 1 22 0 1960 113 17 3 chr11 55832835 55833126 -92950346 + AluSx SINE Alu 1 295 -17 971 176 0 21 chr11 55833302 55833489 -92949983 + AluJo SINE Alu 122 304 -8 326 150 50 90 chr11 55833526 55833626 -92949846 - MER53 DNA DNA -93 96 1 615 274 54 5 chr11 55834087 55834273 -92949199 - MIR SINE MIR -56 206 12 2065 129 10 0 chr11 55834937 55835246 -92948226 + AluSx SINE Alu 1 312 0 785 204 6 18 chr11 55835310 55835477 -92947995 - MER105 DNA DNA -38 166 2 422 196 179 138 chr11 55835479 55835638 -92947834 + LTR37B LTR ERV1 114 265 -203 2497 158 37 41 chr11 55835638 55835887 -92947585 - MER66B LTR ERV1 0 486 237 1843 133 3 3 chr11 55835887 55836213 -92947259 + AluSq SINE Alu 1 326 0 2497 158 37 41 chr11 55836213 55836450 -92947022 - MER66B LTR ERV1 -249 237 1 422 196 179 138 chr11 55836450 55836510 -92946962 + LTR37B LTR ERV1 265 321 -147 261 0 0 0 chr11 55836510 55836539 -92946933 + (CA)n Simple_repeat Simple_repeat 1 29 0 422 196 179 138 chr11 55836539 55836659 -92946813 + LTR37B LTR ERV1 321 468 0 1956 132 0 3 chr11 55837223 55837512 -92945960 + AluJb SINE Alu 3 290 -22 2172 92 0 0 chr11 55837573 55837878 -92945594 + AluSq SINE Alu 1 305 0 2164 73 0 13 chr11 55838029 55838331 -92945141 - AluY SINE Alu -13 298 1 461 310 0 13 chr11 55838334 55838489 -92944983 - L1MC4a LINE L1 -1926 5882 5730 1397 75 5 45 chr11 55838885 55839114 -92944358 - AluY SINE Alu 0 311 91 923 123 182 6 chr11 55839121 55839291 -92944181 + AluSg/x SINE Alu 104 303 -9 889 223 22 44 chr11 55839309 55839582 -92943890 - L1M4 LINE L1 -1404 4742 4476 257 111 0 0 chr11 55839582 55839618 -92943854 - Alu SINE Alu -266 36 1 2394 114 19 21 chr11 55839637 55840013 -92943459 + THE1C LTR MaLR 1 375 0 2162 107 0 0 chr11 55840143 55840433 -92943039 + AluSg SINE Alu 1 290 -20 689 261 35 5 chr11 55840675 55840878 -92942594 + L2 LINE L2 2487 2695 -619 185 108 27 0 chr11 55840884 55840921 -92942551 + (TATAA)n Simple_repeat Simple_repeat 3 40 0 1791 107 43 47 chr11 55840942 55841242 -92942230 - AluSx SINE Alu -13 299 1 2179 141 123 10 chr11 55841433 55841816 -92941656 - MSTA LTR MaLR 0 428 3 5358 106 8 74 chr11 55841818 55842695 -92940777 - MSTA-int LTR MaLR 0 1580 762 1268 157 117 24 chr11 55842703 55842952 -92940520 - MSTA LTR MaLR -156 272 1 209 250 125 0 chr11 55842955 55843027 -92940445 + L2 LINE L2 2934 3014 -299 1891 135 3 3 chr11 55843032 55843328 -92940144 - AluJb SINE Alu -11 301 6 361 85 0 0 chr11 55843328 55843375 -92940097 - THE1-int LTR MaLR -569 1011 965 504 305 112 54 chr11 55843397 55843624 -92939848 + L2 LINE L2 3033 3245 -68 369 0 0 0 chr11 55843624 55843665 -92939807 + (CA)n Simple_repeat Simple_repeat 2 42 0 1936 130 0 0 chr11 55843671 55843948 -92939524 - AluJb SINE Alu -31 281 5 504 305 112 54 chr11 55843948 55843972 -92939500 + L2 LINE L2 3249 3306 -7 318 232 14 0 chr11 55844386 55844455 -92939017 + tRNA-Gly-GGC tRNA tRNA 2 71 -3 306 214 0 0 chr11 55844465 55844521 -92938951 + L2 LINE L2 3217 3272 0 2511 58 0 0 chr11 55845585 55845896 -92937576 - AluY SINE Alu 0 311 1 21 0 0 0 chr11 55845898 55845919 -92937553 + AT_rich Low_complexity Low_complexity 1 21 0 221 208 0 42 chr11 55846237 55846285 -92937187 + MIR SINE MIR 106 151 -57 372 197 82 41 chr11 55846287 55846434 -92937038 + MER113 DNA MER1_type? 43 195 -326 283 180 26 149 chr11 55846450 55846566 -92936906 - ORSL DNA AcHobo -28 247 118 2101 128 3 0 chr11 55846566 55846872 -92936600 + AluSx SINE Alu 1 307 -5 2176 74 7 3 chr11 55846873 55847156 -92936316 + AluSx SINE Alu 2 285 -27 283 180 26 149 chr11 55847156 55847231 -92936241 - ORSL DNA AcHobo -156 119 78 2063 101 0 24 chr11 55847245 55847543 -92935929 + AluSx SINE Alu 1 291 -21 1244 151 0 19 chr11 55847543 55847742 -92935730 - AluJo SINE Alu -18 294 98 345 197 0 0 chr11 55847742 55847803 -92935669 - ORSL DNA AcHobo -214 61 1 866 228 100 14 chr11 55847819 55848108 -92935364 + MER113 DNA MER1_type? 206 519 -2 567 276 67 67 chr11 55848171 55848345 -92935127 - MIR SINE MIR -19 243 67 2103 103 3 17 chr11 55848345 55848647 -92934825 + AluSq SINE Alu 1 298 -15 567 276 67 67 chr11 55848647 55848711 -92934761 - MIR SINE MIR -194 68 5 2124 116 0 28 chr11 55848846 55849166 -92934306 + AluSx SINE Alu 2 312 0 31 0 0 0 chr11 55849166 55849197 -92934275 + AT_rich Low_complexity Low_complexity 1 31 0 1380 125 49 27 chr11 55849512 55849736 -92933736 - MER30 DNA MER1_type 0 230 2 221 259 11 0 chr11 55850007 55850062 -92933410 + GA-rich Low_complexity Low_complexity 1 97 0 254 299 41 31 chr11 55850220 55850317 -92933155 + MIR SINE MIR 24 121 -87 1650 169 0 26 chr11 55850642 55850944 -92932528 + AluJo SINE Alu 1 294 -18 490 289 92 75 chr11 55851140 55851179 -92932293 - MIR SINE MIR -19 243 206 955 193 23 0 chr11 55851179 55851350 -92932122 - FAM SINE Alu 0 175 1 490 289 92 75 chr11 55851350 55851538 -92931934 - MIR SINE MIR -56 206 12 202 188 0 42 chr11 55851651 55851699 -92931773 + A-rich Low_complexity Low_complexity 1 46 0 274 210 10 90 chr11 55851700 55851800 -92931672 + MER103 DNA DNA 6 97 -69 231 88 0 0 chr11 55851815 55851849 -92931623 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 743 185 8 0 chr11 55851855 55851974 -92931498 - AluJb SINE Alu -192 120 1 287 197 70 0 chr11 55852122 55852193 -92931279 - MIR3 SINE MIR -48 160 85 2305 79 0 0 chr11 55852291 55852583 -92930889 - AluSg SINE Alu -17 293 2 1226 216 121 44 chr11 55853244 55853575 -92929897 + MER113 DNA MER1_type? 7 378 -143 1719 153 14 0 chr11 55853575 55853685 -92929787 + AluJb SINE Alu 15 122 -190 279 0 0 0 chr11 55853685 55853716 -92929756 + (CA)n Simple_repeat Simple_repeat 2 32 0 1719 153 14 0 chr11 55853716 55853892 -92929580 + AluJb SINE Alu 122 305 -7 1226 216 121 44 chr11 55853892 55853972 -92929500 + MER113 DNA MER1_type? 378 450 -71 187 185 56 37 chr11 55854092 55854146 -92929326 - MIR SINE MIR -133 75 21 2061 111 0 0 chr11 55855669 55855980 -92927492 + AluSx SINE Alu 1 312 0 190 350 12 12 chr11 55855981 55856061 -92927411 - L3 LINE CR1 -18 1559 1480 757 251 77 5 chr11 55856129 55856324 -92927148 + MIR SINE MIR 40 248 -14 251 231 123 0 chr11 55856345 55856410 -92927062 - L3 LINE CR1 -174 1403 1331 2307 87 0 0 chr11 55856410 55856708 -92926764 - AluSx SINE Alu -14 298 1 423 217 50 93 chr11 55856791 55856895 -92926577 - MIR SINE MIR -95 167 71 2296 96 0 0 chr11 55856895 55857196 -92926276 + AluSq SINE Alu 2 302 -11 423 217 50 93 chr11 55857196 55857252 -92926220 - MIR SINE MIR -191 71 14 2106 123 0 7 chr11 55857466 55857776 -92925696 - AluSq SINE Alu -5 308 1 191 244 0 0 chr11 55857782 55857823 -92925649 - MIR SINE MIR -61 147 107 * 353 253 142 33 chr11 55857821 55857940 -92925532 + MIR SINE MIR 10 99 -109 1840 167 3 0 chr11 55857940 55858240 -92925232 + AluJb SINE Alu 1 301 -11 353 253 142 33 chr11 55858240 55858294 -92925178 + MIR SINE MIR 99 146 -62 1478 204 34 76 chr11 55858349 55858756 -92924716 + MLT1B LTR MaLR 1 390 0 207 0 0 0 chr11 55859015 55859038 -92924434 + (TG)n Simple_repeat Simple_repeat 1 23 0 2001 100 35 3 chr11 55859126 55859415 -92924057 - AluSp SINE Alu -15 298 1 275 179 24 83 chr11 55859854 55859938 -92923534 + L2 LINE L2 3235 3313 0 635 249 118 0 chr11 55860112 55860281 -92923191 - MIR SINE MIR -23 239 51 2185 106 0 0 chr11 55860307 55860609 -92922863 - AluSq SINE Alu -11 302 1 2302 80 3 0 chr11 55860621 55860922 -92922550 - AluSx SINE Alu -9 303 2 213 185 19 19 chr11 55861007 55861061 -92922411 - MIR SINE MIR -112 96 43 219 296 72 94 chr11 55861271 55861589 -92921883 + L2 LINE L2 2935 3245 -27 1528 113 105 4 chr11 55861797 55862063 -92921409 + AluSx SINE Alu 10 302 -10 288 111 0 0 chr11 55862998 55863043 -92920429 + (A)n Simple_repeat Simple_repeat 1 45 0 920 174 32 63 chr11 55863180 55863433 -92920039 - LTR37A LTR ERV1 0 426 182 210 37 0 0 chr11 55863591 55863618 -92919854 + (TTG)n Simple_repeat Simple_repeat 2 28 0 2169 77 7 20 chr11 55863620 55863918 -92919554 - AluSg SINE Alu -16 294 1 1637 200 3 0 chr11 55863918 55864213 -92919259 - AluJb SINE Alu -16 296 1 913 179 12 46 chr11 55864393 55864566 -92918906 + FAM SINE Alu 1 167 -8 501 232 72 50 chr11 55864830 55864973 -92918499 - MER102b DNA MER1_type -1116 312 163 1714 169 0 19 chr11 55864973 55865286 -92918186 - AluJo SINE Alu -3 309 3 501 232 72 50 chr11 55865286 55865323 -92918149 - MER102b DNA MER1_type -1265 163 128 1929 112 53 3 chr11 55865438 55865723 -92917749 - AluSx SINE Alu -13 299 1 336 299 28 0 chr11 55865910 55866054 -92917418 - L1MC4a LINE L1 -1865 5943 5796 43 20 0 0 chr11 55866054 55866104 -92917368 + AT_rich Low_complexity Low_complexity 1 50 0 798 118 0 0 chr11 55866104 55866214 -92917258 - FLAM_C SINE Alu -25 118 9 576 307 78 4 chr11 55866219 55866463 -92917009 - L1MC4a LINE L1 -2002 5806 5545 527 105 0 0 chr11 55866463 55866539 -92916933 - Alu SINE Alu -5 304 229 345 257 14 0 chr11 55866540 55866614 -92916858 - L1MC4a LINE L1 -2258 5550 5476 395 241 60 15 chr11 55867515 55867648 -92915824 - L1MC4a LINE L1 -2338 5470 5332 2115 105 0 0 chr11 55867650 55867935 -92915537 - AluSx SINE Alu -6 306 22 2153 98 3 29 chr11 55868395 55868711 -92914761 - AluSx SINE Alu -4 308 1 255 269 0 0 chr11 55868736 55868788 -92914684 - AluSp SINE Alu -132 171 120 295 180 197 0 chr11 55868802 55868863 -92914609 + MER34C LTR ERV1 3 75 -510 913 181 81 1 chr11 55868863 55869154 -92914318 + MER34C LTR ERV1 248 583 -2 325 167 0 175 chr11 55869535 55869624 -92913848 + MIR3 SINE MIR 88 150 -58 2404 156 30 25 chr11 55869624 55870055 -92913417 + Tigger2a DNA MER2_type 2 434 0 325 167 0 175 chr11 55870055 55870091 -92913381 + MIR3 SINE MIR 150 191 -17 225 0 0 0 chr11 55870261 55870286 -92913186 + (T)n Simple_repeat Simple_repeat 1 25 0 1958 152 0 0 chr11 55870414 55870723 -92912749 - AluJo SINE Alu -3 309 1 875 120 0 0 chr11 55870723 55870856 -92912616 + L1M1 LINE L1 3272 3404 -4161 267 174 0 0 chr11 55870857 55870903 -92912569 + MER20 DNA MER1_type 170 215 -4 623 309 21 5 chr11 55871402 55871593 -92911879 + MIR SINE MIR 21 214 -48 206 310 69 35 chr11 55871937 55872053 -92911419 + L2 LINE L2 3172 3291 -22 198 250 23 80 chr11 55872213 55872301 -92911171 + L2 LINE L2 3151 3233 -39 269 364 64 21 chr11 55872885 55873165 -92910307 + L2 LINE L2 2487 2778 -536 777 309 106 53 chr11 55873559 55874076 -92909396 + L2 LINE L2 2712 3259 -13 256 322 99 0 chr11 55875065 55875186 -92908286 - L2 LINE L2 -1 3312 3180 470 301 145 5 chr11 55875593 55875779 -92907693 + MIR SINE MIR 1 212 -50 452 294 102 17 chr11 55876769 55876946 -92906526 - MIR SINE MIR -12 250 59 473 314 163 4 chr11 55877075 55877333 -92906139 + MLT1J2 LTR MaLR 109 407 -43 332 319 17 17 chr11 55879623 55879742 -92903730 - MIR3 SINE MIR -1 207 89 377 308 67 10 chr11 55879841 55879945 -92903527 - L2 LINE L2 -3 3269 3160 25 0 0 0 chr11 55880282 55880307 -92903165 + AT_rich Low_complexity Low_complexity 1 25 0 290 304 80 59 chr11 55880372 55880609 -92902863 + MIR SINE MIR 6 247 -15 487 247 74 37 chr11 55881037 55881199 -92902273 - MIR SINE MIR -44 218 51 208 257 193 46 chr11 55881567 55881676 -92901796 + L2 LINE L2 3148 3272 0 296 270 132 13 chr11 55882126 55882278 -92901194 + L2 LINE L2 3140 3309 -4 267 323 38 51 chr11 55882278 55882436 -92901036 + L2 LINE L2 2621 2776 -538 837 132 17 29 chr11 55883018 55883192 -92900280 + L1MB4 LINE L1 6008 6179 -1 994 108 19 13 chr11 55884296 55884454 -92899018 + LTR38-int LTR ERV1 938 1096 -690 328 315 0 47 chr11 55884596 55884737 -92898735 - L2 LINE L2 -563 2751 2618 753 237 58 0 chr11 55884737 55884910 -92898562 - MER5A DNA MER1_type 0 189 7 1671 190 60 7 chr11 55884938 55885272 -92898200 - MLT1A1 LTR MaLR 0 365 13 2684 21 0 0 chr11 55885274 55885565 -92897907 + AluYa5 SINE Alu 1 291 -20 1168 156 57 5 chr11 55885932 55886144 -92897328 + MER30 DNA MER1_type 6 228 -2 623 106 10 14 chr11 55886250 55886358 -92897114 - L1PA13 LINE L1 -180 5974 5862 1321 189 82 25 chr11 55886582 55886899 -92896573 + MLT2C1 LTR ERVL 1 335 -62 329 276 149 9 chr11 55887606 55887755 -92895717 + MIR3 SINE MIR 1 172 -63 1719 177 20 14 chr11 55888278 55888572 -92894900 + AluSx SINE Alu 1 296 -16 226 336 164 0 chr11 55889743 55889853 -92893619 + L2 LINE L2 3145 3272 0 212 335 90 45 chr11 55890224 55890379 -92893093 - L2 LINE L2 -8 3264 3103 216 0 0 0 chr11 55890666 55890690 -92892782 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1924 133 0 0 chr11 55892952 55893215 -92890257 + AluJb SINE Alu 34 296 -16 2347 92 40 245 chr11 55893216 55893426 -92890046 + Tigger3(Golem) DNA MER2_type 2396 2647 -381 1301 124 0 0 chr11 55893426 55893604 -92889868 - AluSq SINE Alu -1 312 135 2154 118 0 38 chr11 55893605 55893919 -92889553 - AluSx SINE Alu -10 302 1 2347 92 40 245 chr11 55893919 55894321 -92889151 + Tigger3(Golem) DNA MER2_type 2646 3024 -4 2120 124 0 10 chr11 55894349 55894648 -92888824 - AluSx SINE Alu -16 296 1 1872 145 0 35 chr11 55894654 55894964 -92888508 - AluJo SINE Alu 0 312 14 339 319 17 9 chr11 55895232 55895348 -92888124 - L2 LINE L2 -184 3088 2972 1666 196 7 7 chr11 55895442 55895728 -92887744 + AluJo SINE Alu 1 286 -26 1967 123 50 17 chr11 55895739 55896041 -92887431 + AluSx SINE Alu 1 312 0 229 228 134 39 chr11 55896376 55896503 -92886969 - MIR3 SINE MIR -11 197 59 2147 113 10 7 chr11 55896851 55897152 -92886320 + AluSx SINE Alu 1 302 -10 2223 111 6 16 chr11 55898501 55898816 -92884656 - AluSx SINE Alu 0 312 1 2394 91 3 0 chr11 55899491 55899789 -92883683 + AluSg SINE Alu 1 299 -11 1813 234 32 57 chr11 55899789 55900040 -92883432 - L1ME3 LINE L1 -8 6154 5898 1903 164 7 3 chr11 55900040 55900333 -92883139 + AluJb SINE Alu 2 295 -17 2474 65 0 47 chr11 55900336 55900657 -92882815 + AluY SINE Alu 1 306 -5 1813 234 32 57 chr11 55900657 55900960 -92882512 - L1ME3 LINE L1 -266 5896 5610 1150 246 71 33 chr11 55900960 55901518 -92881954 + MLT2F LTR ERVL 1 663 0 378 214 164 14 chr11 55901519 55901659 -92881813 - L1ME3 LINE L1 -551 5613 5453 327 273 26 0 chr11 55901778 55901855 -92881617 + MIR SINE MIR 66 144 -64 1052 248 58 1 chr11 55901861 55902107 -92881365 - MIR SINE MIR 0 262 7 843 228 64 44 chr11 55902879 55903129 -92880343 + MIR SINE MIR 8 262 0 279 341 32 8 chr11 55903604 55903730 -92879742 - MIR SINE MIR -63 145 17 425 304 121 42 chr11 55904318 55904345 -92879127 + MIR SINE MIR 4 27 -235 2258 128 0 6 chr11 55904345 55904657 -92878815 + AluSx SINE Alu 1 310 -2 425 304 121 42 chr11 55904657 55904869 -92878603 + MIR SINE MIR 27 262 0 225 196 54 36 chr11 55905817 55905873 -92877599 - MIR SINE MIR -115 147 91 323 261 157 0 chr11 55906990 55907105 -92876367 + L2 LINE L2 3136 3268 -4 291 284 181 24 chr11 55908028 55908155 -92875317 - MIR SINE MIR -82 180 34 200 256 0 78 chr11 55909028 55909118 -92874354 + GA-rich Low_complexity Low_complexity 4 86 0 288 273 0 13 chr11 55909501 55909578 -92873894 + MIR SINE MIR 76 151 -111 389 281 209 0 chr11 55911756 55911909 -92871563 - MIR3 SINE MIR -1 207 23 2244 99 13 22 chr11 55912583 55912896 -92870576 + AluSx SINE Alu 1 310 -2 258 290 46 46 chr11 55913107 55913238 -92870234 - MIR SINE MIR -60 148 18 1215 229 125 26 chr11 55913772 55914187 -92869285 - MER113 DNA MER1_type? 0 521 66 347 286 224 14 chr11 55914286 55914433 -92869039 + L2 LINE L2 3094 3271 -1 210 294 0 0 chr11 55915166 55915217 -92868255 + L2 LINE L2 3222 3272 0 727 261 86 13 chr11 55915352 55915586 -92867886 - MIR SINE MIR -3 259 9 780 292 61 24 chr11 55915884 55916213 -92867259 + MLT1L LTR MaLR 120 460 -155 2092 142 7 0 chr11 55916495 55916797 -92866675 - AluSx SINE Alu -8 304 1 409 240 80 47 chr11 55916813 55916963 -92866509 + MIR3 SINE MIR 6 160 -48 239 122 0 20 chr11 55917361 55917410 -92866062 - L1MB4 LINE L1 -1 6179 6132 2296 83 0 0 chr11 55917410 55917688 -92865784 - AluSx SINE Alu -17 295 18 1132 192 10 20 chr11 55917703 55917901 -92865571 - AluJo SINE Alu -116 196 1 1073 128 0 61 chr11 55917903 55917949 -92865523 - L1MB3 LINE L1 -311 5872 5825 1477 192 34 24 chr11 55917949 55918246 -92865226 - AluJo SINE Alu 0 312 13 1073 128 0 61 chr11 55918246 55918395 -92865077 - L1MB3 LINE L1 -358 5825 5689 1484 229 126 43 chr11 55918670 55919177 -92864295 - MLT1H LTR MaLR 0 549 1 558 294 54 2 chr11 55919229 55919394 -92864078 - MIR SINE MIR -60 202 29 545 259 71 53 chr11 55919394 55919564 -92863908 - MER5B DNA MER1_type -3 175 3 184 261 77 15 chr11 55919834 55919899 -92863573 - MIR3 SINE MIR -7 201 133 908 254 32 11 chr11 55920199 55920478 -92862994 + L1MA9 LINE L1 5990 6274 -38 21 0 0 0 chr11 55920533 55920554 -92862918 + AT_rich Low_complexity Low_complexity 1 21 0 190 369 60 13 chr11 55920895 55921044 -92862428 - L2 LINE L2 -198 3074 2919 2232 118 13 0 chr11 55921781 55922085 -92861387 - AluSx SINE Alu -4 308 1 796 290 50 84 chr11 55922120 55922596 -92860876 - L2 LINE L2 0 3272 2813 1174 207 73 55 chr11 55922749 55923242 -92860230 - L1MC5 LINE L1 -161 7800 7299 1174 236 102 96 chr11 55923389 55923479 -92859993 - L1MC5 LINE L1 -534 5825 5737 2143 108 40 0 chr11 55923479 55923776 -92859696 - AluSx SINE Alu -3 309 1 1174 236 102 96 chr11 55923776 55924631 -92858841 - L1MC5 LINE L1 -622 5737 4888 1530 175 12 92 chr11 55924631 55924957 -92858515 - AluJb SINE Alu -12 300 1 1174 236 102 96 chr11 55924957 55925251 -92858221 - L1MC5 LINE L1 -1471 4888 5934 2840 73 0 8 chr11 55925251 55925609 -92857863 - THE1A LTR MaLR 0 355 1 1174 236 102 96 chr11 55925609 55925865 -92857607 - L1MC5 LINE L1 -424 5935 5682 529 263 52 13 chr11 55925866 55926098 -92857374 - L2 LINE L2 -652 2662 2422 208 329 67 3 chr11 55927543 55927655 -92855817 - MIR SINE MIR -76 132 14 1820 164 0 16 chr11 55927729 55928034 -92855438 - AluJo SINE Alu -12 300 1 311 254 9 60 chr11 55928102 55928220 -92855252 + MIR SINE MIR 50 166 -63 243 0 0 0 chr11 55928621 55928648 -92854824 + (CA)n Simple_repeat Simple_repeat 2 28 0 284 270 112 72 chr11 55929020 55929172 -92854300 + MIR3 SINE MIR 48 205 -3 294 73 0 0 chr11 55929397 55929438 -92854034 + (TG)n Simple_repeat Simple_repeat 2 42 0 396 295 186 10 chr11 55929663 55929856 -92853616 + MIR SINE MIR 17 243 -19 463 226 0 0 chr11 55930076 55930160 -92853312 - L2 LINE L2 0 3272 3189 228 296 74 59 chr11 55930296 55930431 -92853041 + L2 LINE L2 2715 2851 -463 307 351 79 44 chr11 55930465 55930807 -92852665 + L2 LINE L2 2919 3272 0 298 237 244 38 chr11 55930903 55931034 -92852438 + MIR SINE MIR 57 214 -48 572 175 70 63 chr11 55931054 55931279 -92852193 + L1MA9 LINE L1 5699 5921 -263 2126 131 26 3 chr11 55931279 55931584 -92851888 + AluSx SINE Alu 1 312 0 572 175 70 63 chr11 55931584 55931762 -92851710 + L1MA9 LINE L1 5921 6181 -3 1724 165 45 10 chr11 55931920 55932091 -92851381 - AluJb SINE Alu -10 302 115 225 0 0 0 chr11 55932091 55932116 -92851356 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 1724 165 45 10 chr11 55932116 55932235 -92851237 - AluJb SINE Alu -197 115 2 241 304 222 22 chr11 55932513 55932648 -92850824 - MIR SINE MIR -98 164 3 1403 37 9 0 chr11 55932654 55932868 -92850604 + (TTC)n Simple_repeat Simple_repeat 1 216 0 799 240 23 0 chr11 55932874 55933045 -92850427 - FRAM SINE Alu -1 175 1 317 259 9 18 chr11 55933075 55933187 -92850285 - L1ME4a LINE L1 -43 6078 5968 255 239 14 0 chr11 55933205 55933276 -92850196 - L1ME4a LINE L1 -244 5877 5806 691 120 0 0 chr11 55933715 55933835 -92849637 - AluJb SINE Alu 0 309 190 2273 82 4 0 chr11 55934125 55934437 -92849035 - AluSc SINE Alu 0 313 1 356 200 200 50 chr11 55934537 55934677 -92848795 + MIR SINE MIR 33 193 -69 601 317 93 0 chr11 55934702 55934907 -92848565 + MIR SINE MIR 23 246 -16 303 306 192 16 chr11 55935326 55935519 -92847953 + MIR SINE MIR 34 260 -2 2195 98 27 14 chr11 55935580 55935876 -92847596 - AluSg SINE Alu -10 300 1 345 325 45 103 chr11 55935917 55936209 -92847263 + L2 LINE L2 2982 3256 -16 362 21 21 0 chr11 55936215 55936262 -92847210 + (GA)n Simple_repeat Simple_repeat 1 48 0 285 312 69 40 chr11 55936509 55936711 -92846761 - MIR SINE MIR -14 248 41 34 0 0 0 chr11 55936711 55936745 -92846727 + AT_rich Low_complexity Low_complexity 1 34 0 351 296 159 0 chr11 55936914 55937090 -92846382 + MIR SINE MIR 53 256 -6 475 328 111 30 chr11 55937192 55937597 -92845875 - L2 LINE L2 0 3272 2835 1010 234 0 5 chr11 55937605 55937810 -92845662 + MER20 DNA MER1_type 2 205 -14 1259 312 107 32 chr11 55937882 55938214 -92845258 - L2 LINE L2 -590 2724 2418 294 29 0 0 chr11 55938214 55938249 -92845223 + (TG)n Simple_repeat Simple_repeat 2 36 0 1259 312 107 32 chr11 55938249 55938822 -92844650 - L2 LINE L2 -896 2418 1751 498 284 13 52 chr11 55939425 55939657 -92843815 - L2 LINE L2 -72 3241 3019 183 283 33 0 chr11 55940062 55940122 -92843350 + MIR3 SINE MIR 129 190 -18 2347 200 39 29 chr11 55940602 55941169 -92842303 - MLT1E3 LTR MaLR 0 624 42 227 240 20 0 chr11 55941371 55941421 -92842051 - Charlie4 DNA MER1_type -1910 51 1 794 282 111 68 chr11 55942254 55942679 -92840793 - LTR67 LTR ERVL 0 557 115 678 229 24 62 chr11 55942800 55943010 -92840462 - MIR SINE MIR -58 204 3 215 338 13 0 chr11 55943427 55943504 -92839968 + L2 LINE L2 2905 2982 -290 463 300 9 0 chr11 55943844 55943954 -92839518 - L2 LINE L2 0 3272 3162 264 259 35 24 chr11 55944105 55944190 -92839282 + MIR SINE MIR 117 202 -60 2005 155 0 0 chr11 55944222 55944506 -92838966 - AluSx SINE Alu -28 284 1 288 295 65 50 chr11 55944647 55944786 -92838686 + MER5B DNA MER1_type 1 141 -37 258 366 79 14 chr11 55945009 55945375 -92838097 - L1MC4a LINE L1 -1870 5938 5549 249 196 0 18 chr11 55945405 55945461 -92838011 - MER5B DNA MER1_type -123 55 1 202 128 0 26 chr11 55946294 55946333 -92837139 + (TG)n Simple_repeat Simple_repeat 2 39 0 263 278 15 11 chr11 55946694 55946828 -92836644 - MIR SINE MIR -70 192 14 206 316 13 26 chr11 55947897 55947973 -92835499 + MIR SINE MIR 18 92 -116 1182 116 0 0 chr11 55947973 55948168 -92835304 + AluSp SINE Alu 131 325 0 489 226 77 30 chr11 55949415 55949583 -92833889 + LTR16C LTR ERVL 316 491 0 183 308 202 48 chr11 55949700 55949908 -92833564 - MIR SINE MIR -15 247 8 234 274 60 12 chr11 55950476 55950560 -92832912 - MIR SINE MIR 0 262 175 318 329 53 0 chr11 55950621 55950791 -92832681 + L1ME3 LINE L1 5984 6162 0 2513 67 0 7 chr11 55950799 55951096 -92832376 + AluSp SINE Alu 1 295 -18 250 304 36 58 chr11 55951162 55951300 -92832172 + L2 LINE L2 3161 3295 -18 363 190 165 41 chr11 55951347 55951468 -92832004 - MIR SINE MIR -31 231 96 384 314 45 57 chr11 55951692 55951937 -92831535 + MIR SINE MIR 21 262 0 296 264 46 0 chr11 55952086 55952200 -92831272 + MIR SINE MIR 30 152 -64 2341 119 3 0 chr11 55952200 55952511 -92830961 + AluSx SINE Alu 1 312 0 2228 120 0 0 chr11 55952977 55953278 -92830194 - AluSx SINE Alu -11 301 1 637 184 76 32 chr11 55953480 55953638 -92829834 - MER96B DNA MER1_type? -252 165 1 894 239 18 14 chr11 55953802 55954020 -92829452 + MER20 DNA MER1_type 1 219 0 952 168 0 0 chr11 55954083 55954226 -92829246 + FRAM SINE Alu 18 160 -16 1995 100 100 4 chr11 55954231 55954511 -92828961 + AluSg SINE Alu 1 307 -3 256 271 69 62 chr11 55954544 55954688 -92828784 + MIR3 SINE MIR 19 163 -45 2515 81 3 0 chr11 55955883 55956191 -92827281 - AluSg SINE Alu -1 309 1 905 208 0 0 chr11 55956898 55957066 -92826406 - MER5A DNA MER1_type -1 188 21 891 255 17 4 chr11 55957087 55957318 -92826154 + MIR SINE MIR 29 262 0 944 188 9 71 chr11 55957742 55957966 -92825506 - MER63A DNA MER1_type 0 210 1 590 196 155 7 chr11 55958140 55958288 -92825184 + MER5A DNA MER1_type 14 183 -6 842 258 16 43 chr11 55958999 55959255 -92824217 + MIR SINE MIR 3 251 -11 528 152 0 0 chr11 55959907 55960011 -92823461 + AluSg/x SINE Alu 203 306 0 1651 187 10 0 chr11 55960071 55960371 -92823101 + AluJo SINE Alu 1 303 -9 188 260 20 0 chr11 55960397 55960447 -92823025 - MIR SINE MIR -63 145 95 182 186 47 0 chr11 55960800 55960843 -92822629 - MIR SINE MIR -113 149 105 203 257 43 14 chr11 55961821 55961891 -92821581 + MIR SINE MIR 46 117 -91 265 364 69 12 chr11 55961941 55962188 -92821284 - L2 LINE L2 -509 2805 2545 280 267 59 15 chr11 55962492 55962627 -92820845 - MER103 DNA DNA -12 154 14 2135 118 0 0 chr11 55962680 55962960 -92820512 + AluSx SINE Alu 1 280 -32 186 43 0 0 chr11 55962970 55962993 -92820479 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 316 207 110 0 chr11 55963002 55963084 -92820388 - MIR3 SINE MIR -48 160 70 2293 85 3 10 chr11 55963562 55963869 -92819603 + AluY SINE Alu 1 305 -6 294 308 138 6 chr11 55964176 55964335 -92819137 - MIR SINE MIR -70 192 13 2194 126 0 16 chr11 55964877 55965194 -92818278 + AluSx SINE Alu 1 312 0 225 241 19 0 chr11 55965197 55965251 -92818221 + (TA)n Simple_repeat Simple_repeat 1 55 0 262 302 32 0 chr11 55965300 55965426 -92818046 - MER113 DNA MER1_type? -384 137 8 276 286 184 0 chr11 55965426 55965573 -92817899 + MIR SINE MIR 12 185 -77 1783 196 0 0 chr11 55965711 55966002 -92817470 + AluJb SINE Alu 1 291 -21 1164 163 6 0 chr11 55966022 55966200 -92817272 + AluJb SINE Alu 122 300 -12 648 232 21 57 chr11 55966313 55966507 -92816965 + MIR SINE MIR 29 215 -47 1705 181 3 31 chr11 55966697 55966837 -92816635 + AluJb SINE Alu 1 143 -169 2138 127 7 7 chr11 55966837 55967145 -92816327 + AluSx SINE Alu 1 308 -4 1705 181 3 31 chr11 55967145 55967324 -92816148 + AluJb SINE Alu 143 312 0 203 331 86 63 chr11 55967368 55967543 -92815929 - MIR SINE MIR -71 191 13 318 233 33 22 chr11 55967547 55967637 -92815835 - MIR SINE MIR -70 192 102 2435 100 0 0 chr11 55967637 55967946 -92815526 + AluSx SINE Alu 2 310 -2 1027 188 21 0 chr11 55968285 55968471 -92815001 + AluJo SINE Alu 122 311 -1 1933 158 16 0 chr11 55968487 55968791 -92814681 + AluSx SINE Alu 1 309 -3 1571 180 53 39 chr11 55968874 55968960 -92814512 + L1M4 LINE L1 4963 5046 -1138 2285 90 0 4 chr11 55968960 55969238 -92814234 + AluSc SINE Alu 1 277 -32 981 133 0 0 chr11 55969247 55969405 -92814067 + (GGAA)n Simple_repeat Simple_repeat 3 160 0 1571 180 53 39 chr11 55969405 55969823 -92813649 + L1M4 LINE L1 5053 5481 -703 2511 85 0 3 chr11 55969823 55970129 -92813343 + AluSx SINE Alu 1 305 -7 1571 180 53 39 chr11 55970129 55970206 -92813266 + L1M4 LINE L1 5481 5555 -629 489 71 191 0 chr11 55970207 55970291 -92813181 + HY3 scRNA scRNA 1 100 -1 32 67 0 0 chr11 55970291 55970351 -92813121 + AT_rich Low_complexity Low_complexity 1 60 0 2126 97 38 3 chr11 55970359 55970647 -92812825 + AluSq SINE Alu 1 298 -15 418 146 153 58 chr11 55970653 55970790 -92812682 + L1M4 LINE L1 5542 5691 -493 1864 168 0 19 chr11 55970792 55971101 -92812371 + AluJo SINE Alu 1 303 -9 208 173 0 107 chr11 55971597 55971794 -92811678 + G-rich Low_complexity Low_complexity 3 178 0 412 322 0 16 chr11 55972574 55972757 -92810715 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 216 347 8 0 chr11 55972825 55972949 -92810523 + (TG)n Simple_repeat Simple_repeat 2 126 0 4690 114 9 20 chr11 55973366 55973499 -92809973 - L1PA14 LINE L1 0 6161 6028 2361 68 32 26 chr11 55973499 55973807 -92809665 - AluY SINE Alu -1 310 1 4690 114 9 20 chr11 55973807 55974464 -92809008 - L1PA14 LINE L1 -133 6028 5380 379 288 34 51 chr11 55975145 55975322 -92808150 + MLT1J2 LTR MaLR 42 215 -235 240 302 183 15 chr11 55975503 55975643 -92807829 + MIR SINE MIR 5 167 -41 599 149 189 7 chr11 55976551 55976699 -92806773 + MER69A DNA AcHobo 1 175 -2 399 269 106 7 chr11 55976813 55976954 -92806518 + MIR3 SINE MIR 37 191 -17 702 249 108 0 chr11 55977475 55977660 -92805812 + MIR SINE MIR 37 241 -21 1503 116 18 0 chr11 55978751 55978976 -92804496 + MSTC LTR MaLR 1 229 -199 326 323 11 0 chr11 55979265 55979358 -92804114 + L3 LINE CR1 1376 1469 -108 521 237 21 81 chr11 55980102 55980224 -92803248 + MER5A DNA MER1_type 15 124 -65 2369 102 0 0 chr11 55980224 55980528 -92802944 - AluSx SINE Alu -8 304 1 521 237 21 81 chr11 55980528 55980591 -92802881 + MER5A DNA MER1_type 124 189 0 807 259 18 27 chr11 55980653 55980873 -92802599 + MIR SINE MIR 45 262 0 2325 115 61 29 chr11 55980951 55981359 -92802113 + MSTC LTR MaLR 1 421 -7 221 289 99 41 chr11 55981629 55981750 -92801722 - MIR SINE MIR -115 147 20 * 224 296 90 53 chr11 55981732 55981921 -92801551 + MIR SINE MIR 32 227 -35 231 336 58 10 chr11 55982205 55982309 -92801163 + MIR SINE MIR 30 138 -124 558 292 90 6 chr11 55982382 55982560 -92800912 + LTR33 LTR ERVL 1 193 -328 343 292 69 51 chr11 55982572 55982788 -92800684 + LTR33 LTR ERVL 295 514 -7 254 290 262 0 chr11 55983489 55983634 -92799838 - MIR SINE MIR -78 184 2 1137 278 78 24 chr11 55984247 55984668 -92798804 + MLT1J2 LTR MaLR 1 444 -6 220 320 26 0 chr11 55984849 55984927 -92798545 + MIR SINE MIR 76 155 -107 945 215 35 31 chr11 55985077 55985338 -92798134 - MIR SINE MIR 0 262 1 283 285 88 52 chr11 55985678 55985871 -92797601 + L2 LINE L2 2836 3035 -237 357 262 117 114 chr11 55985881 55986121 -92797351 - L2 LINE L2 -7 3265 3022 3874 81 25 4 chr11 55986121 55986679 -92796793 + L1PA10 LINE L1 5599 6168 0 357 262 117 114 chr11 55986679 55986858 -92796614 - L2 LINE L2 -250 3022 2845 705 196 35 7 chr11 55986860 55987003 -92796469 - MER63A DNA MER1_type -9 201 55 2022 109 6 19 chr11 55987142 55987454 -92796018 - AluSc SINE Alu -1 308 1 247 340 11 11 chr11 55987782 55987876 -92795596 - MIR SINE MIR -10 252 159 715 265 93 5 chr11 55987886 55988101 -92795371 + MIR SINE MIR 26 259 -3 280 271 144 8 chr11 55988118 55988236 -92795236 - MIR SINE MIR -117 145 12 544 252 60 18 chr11 55988581 55988799 -92794673 + LTR33 LTR ERVL 54 280 -241 195 139 0 0 chr11 55989050 55989086 -92794386 + (TG)n Simple_repeat Simple_repeat 1 36 0 523 286 13 19 chr11 55989294 55989448 -92794024 - MIR3 SINE MIR -15 193 41 546 291 26 7 chr11 55989658 55989809 -92793663 - L3 LINE CR1 -73 1504 1351 273 186 194 70 chr11 55990359 55990488 -92792984 + MIR SINE MIR 20 164 -98 463 294 57 41 chr11 55990488 55990633 -92792839 + MIR SINE MIR 14 166 -96 1905 114 17 24 chr11 55990633 55990930 -92792542 - AluSg SINE Alu -15 295 1 463 294 57 41 chr11 55990930 55991029 -92792443 + MIR SINE MIR 166 262 0 266 253 13 27 chr11 55991736 55991811 -92791661 + MIR SINE MIR 47 120 -142 23 33 0 0 chr11 55991922 55991952 -92791520 + AT_rich Low_complexity Low_complexity 1 30 0 834 128 0 8 chr11 55991956 55992081 -92791391 - FLAM_C SINE Alu -19 124 1 2191 108 3 9 chr11 55992323 55992638 -92790834 + AluSq SINE Alu 1 313 0 1031 184 73 15 chr11 55992910 55993171 -92790301 + LTR33 LTR ERVL 246 521 0 222 244 0 0 chr11 55993207 55993326 -92790146 + (CA)n Simple_repeat Simple_repeat 2 120 0 243 326 11 0 chr11 55993745 55993834 -92789638 + L3 LINE CR1 1313 1402 -175 239 268 31 71 chr11 55993957 55994084 -92789388 + MIR3 SINE MIR 87 208 0 425 294 40 45 chr11 55994518 55994695 -92788777 + MIR SINE MIR 53 228 -34 22 56 0 0 chr11 55995747 55995783 -92787689 + AT_rich Low_complexity Low_complexity 1 36 0 504 89 25 0 chr11 55996041 55996120 -92787352 + L1MA7 LINE L1 6211 6291 0 202 339 0 0 chr11 55996188 55996244 -92787228 + L2 LINE L2 3217 3272 0 209 346 144 0 chr11 55996295 55996399 -92787073 - MIR SINE MIR -54 208 90 180 0 0 0 chr11 55996461 55996481 -92786991 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 332 284 273 6 chr11 55996774 55996950 -92786522 - L3 LINE CR1 -3 1574 1352 2101 63 60 0 chr11 55997384 55997669 -92785803 + AluY SINE Alu 1 302 -9 190 363 39 59 chr11 55998366 55998492 -92784980 + L2 LINE L2 3073 3195 -77 1966 110 0 20 chr11 55998492 55998791 -92784681 - AluSg SINE Alu -17 293 1 190 363 39 59 chr11 55998791 55998868 -92784604 + L2 LINE L2 3195 3272 0 196 384 30 44 chr11 56000553 56000678 -92782794 + L2 LINE L2 3073 3195 -77 1513 162 0 30 chr11 56000678 56000980 -92782492 - AluSg SINE Alu -17 293 1 196 384 30 44 chr11 56000980 56001057 -92782415 + L2 LINE L2 3195 3272 0 219 286 0 0 chr11 56002023 56002072 -92781400 + C-rich Low_complexity Low_complexity 4 52 0 465 291 89 66 chr11 56002240 56002587 -92780885 + L2 LINE L2 2917 3271 -1 417 220 37 70 chr11 56003077 56003249 -92780223 - MIR SINE MIR -62 146 18 210 208 21 0 chr11 56003258 56003306 -92780166 - MIR SINE MIR -127 81 33 688 162 196 44 chr11 56003786 56003990 -92779482 - MER106A DNA MER1_type -1 235 1 253 292 15 0 chr11 56004612 56004677 -92778795 - MIR SINE MIR -74 188 123 244 323 0 21 chr11 56004892 56004988 -92778484 + L3 LINE CR1 1141 1234 -343 189 329 27 0 chr11 56005136 56005209 -92778263 + L3 LINE CR1 1472 1546 -31 21 82 0 0 chr11 56005401 56005450 -92778022 + AT_rich Low_complexity Low_complexity 1 49 0 1853 131 28 0 chr11 56005453 56005743 -92777729 - AluSx SINE Alu -14 298 1 654 179 0 8 chr11 56005744 56005878 -92777594 - L1MA7 LINE L1 -3 6288 6156 461 239 99 14 chr11 56006555 56006697 -92776775 - MIR SINE MIR -77 185 32 383 288 77 24 chr11 56007454 56007624 -92775848 - MIR SINE MIR -50 212 34 2290 90 3 0 chr11 56007701 56008011 -92775461 + AluSx SINE Alu 1 311 -1 189 0 0 0 chr11 56008142 56008163 -92775309 + (T)n Simple_repeat Simple_repeat 1 21 0 184 290 140 20 chr11 56008646 56008746 -92774726 - MIR SINE MIR -60 148 37 * 210 345 84 21 chr11 56008742 56008884 -92774588 - L2 LINE L2 -4 3268 3118 505 308 73 34 chr11 56009396 56009630 -92773842 - L2 LINE L2 -420 2894 2652 1030 180 10 39 chr11 56009643 56009849 -92773623 - MSTD LTR MaLR 0 396 197 237 296 254 0 chr11 56009853 56010022 -92773450 - L2 LINE L2 -675 2639 2428 1729 178 9 107 chr11 56010565 56011004 -92772468 + MSTD LTR MaLR 1 396 0 538 290 99 29 chr11 56011015 56011287 -92772185 + MLT1J LTR MaLR 52 342 -169 774 304 57 51 chr11 56011430 56011666 -92771806 - L2 LINE L2 -941 2373 2140 1679 277 41 34 chr11 56011666 56012255 -92771217 + MLT1E LTR MaLR 1 593 0 774 304 57 51 chr11 56012255 56012356 -92771116 - L2 LINE L2 -1174 2140 2041 2288 168 38 14 chr11 56012356 56012778 -92770694 - MSTB1 LTR MaLR 0 432 1 774 304 57 51 chr11 56012778 56012929 -92770543 - L2 LINE L2 -1273 2041 1881 6738 224 27 46 chr11 56012955 56014821 -92768651 + L1M4b LINE L1 90 1911 -4944 234 0 0 0 chr11 56014821 56014847 -92768625 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 886 240 58 0 chr11 56014854 56015062 -92768410 - AluJo SINE Alu -91 221 2 945 240 55 10 chr11 56015062 56015354 -92768118 + L1M4b LINE L1 1904 2208 -4751 * 4168 159 40 30 chr11 56015353 56015711 -92767761 + L1MB8 LINE L1 5290 5643 -535 1924 189 19 8 chr11 56015711 56016070 -92767402 + MLT1A1 LTR MaLR 3 365 0 4168 159 40 30 chr11 56016070 56016539 -92766933 + L1MB8 LINE L1 5643 6125 -53 1082 106 56 0 chr11 56016535 56016696 -92766776 - L1PA15 LINE L1 -613 5553 5384 * 3318 128 98 2 chr11 56016696 56017240 -92766232 + L1PA15 LINE L1 5558 6158 -7 2161 91 16 10 chr11 56017242 56017549 -92765923 + AluSx SINE Alu 1 309 -3 385 116 72 0 chr11 56017572 56017641 -92765831 + L1MB8 LINE L1 6100 6173 -5 187 251 300 22 chr11 56017709 56017932 -92765540 - L2 LINE L2 -1739 1575 1291 379 277 36 9 chr11 56018223 56018335 -92765137 + MER45A DNA AcHobo 1 115 -63 270 0 0 0 chr11 56018340 56018370 -92765102 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1773 128 25 7 chr11 56018370 56018644 -92764828 - AluJb SINE Alu -33 279 1 233 239 141 0 chr11 56018644 56018715 -92764757 + MER45A DNA AcHobo 98 178 0 731 251 81 56 chr11 56018899 56019070 -92764402 + MLT1I LTR MaLR 26 191 -218 1615 168 21 3 chr11 56019070 56019361 -92764111 + AluJo SINE Alu 1 296 -16 731 251 81 56 chr11 56019361 56019536 -92763936 + MLT1I LTR MaLR 191 409 0 183 80 0 0 chr11 56019793 56019818 -92763654 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 203 234 117 63 chr11 56019820 56019931 -92763541 - L2 LINE L2 -4 3268 3152 1896 69 4 0 chr11 56020353 56020600 -92762872 + L1P4 LINE L1 5372 5619 -544 718 127 38 108 chr11 56020601 56020759 -92762713 + MER51B LTR ERV1 8 154 -223 * 1915 103 25 62 chr11 56020730 56020790 -92762682 + MER51B LTR ERV1 70 131 -246 2221 95 0 3 chr11 56020790 56021096 -92762376 - AluSc SINE Alu -4 305 1 1915 103 25 62 chr11 56021096 56021355 -92762117 + MER51B LTR ERV1 131 377 0 10971 135 45 38 chr11 56021355 56022822 -92760650 + MER51B-int LTR ERV1 1 1487 -6329 2034 115 21 0 chr11 56022822 56023109 -92760363 + AluSp SINE Alu 1 293 -20 10971 135 45 38 chr11 56023109 56023573 -92759899 + MER51B-int LTR ERV1 1487 1946 -5870 5911 121 45 10 chr11 56023570 56024120 -92759352 + MER51B-int LTR ERV1 2218 2747 -5069 * 2196 113 0 3 chr11 56024120 56024429 -92759043 - AluSq SINE Alu -5 308 1 5911 121 45 10 chr11 56024429 56024904 -92758568 + MER51B-int LTR ERV1 2747 3279 -4537 2189 104 23 9 chr11 56024927 56025272 -92758200 + MER51B-int LTR ERV1 4655 5004 -2533 2128 88 37 0 chr11 56025271 56025567 -92757905 + MER51B-int LTR ERV1 5249 5555 -1982 * 458 120 0 2 chr11 56025567 56025681 -92757791 + MER57B LTR ERV1 19 162 -272 2172 152 3 0 chr11 56025827 56026156 -92757316 + MER51B-int LTR ERV1 7487 7816 0 2465 106 2 55 chr11 56026157 56026555 -92756917 + MER51B LTR ERV1 1 377 0 4126 87 2 2 chr11 56026555 56027107 -92756365 + L1PA12 LINE L1 5616 6167 -1 455 309 69 11 chr11 56027455 56027630 -92755842 - MIR SINE MIR -15 247 63 875 170 80 35 chr11 56028467 56028667 -92754805 - MER3 DNA MER1_type 0 209 1 886 265 74 0 chr11 56028672 56028902 -92754570 + MIR SINE MIR 14 260 -2 361 162 101 14 chr11 56029352 56029454 -92754018 - MLT1G LTR MaLR -289 266 152 576 233 186 12 chr11 56029456 56029628 -92753844 - MIR SINE MIR -28 234 33 1956 163 14 79 chr11 56029829 56030246 -92753226 - MLT1B LTR MaLR 0 390 1 1240 139 5 15 chr11 56030469 56030671 -92752801 + AluJo SINE Alu 87 286 -26 229 299 23 23 chr11 56030710 56030797 -92752675 - MIR SINE MIR -70 192 106 1303 199 3 26 chr11 56030873 56031175 -92752297 + AluSx SINE Alu 1 295 -7 294 29 0 0 chr11 56031284 56031319 -92752153 + (CA)n Simple_repeat Simple_repeat 2 36 0 248 258 43 43 chr11 56031326 56031419 -92752053 - MIR SINE MIR -121 141 49 1352 259 98 37 chr11 56031625 56032115 -92751357 + MLT1H1 LTR MaLR 36 555 0 972 251 44 105 chr11 56032427 56032946 -92750526 + L2 LINE L2 2788 3272 0 678 241 77 135 chr11 56033311 56033754 -92749718 - MLT1K LTR MaLR -81 507 91 561 150 0 0 chr11 56034326 56034426 -92749046 + (TGGA)n Simple_repeat Simple_repeat 1 100 0 535 281 109 16 chr11 56034580 56034772 -92748700 - MIR SINE MIR 0 262 53 365 262 103 48 chr11 56034928 56035054 -92748418 - MLT1J2 LTR MaLR -3 447 315 314 300 67 8 chr11 56035048 56035168 -92748304 - MLT1I LTR MaLR -169 240 114 * 410 241 54 18 chr11 56035588 56035700 -92747772 - MIR SINE MIR -65 197 82 848 294 35 0 chr11 56035877 56036108 -92747364 + MIR SINE MIR 15 253 -9 1664 189 88 34 chr11 56036787 56036823 -92746649 + L1M4 LINE L1 5254 5287 -897 907 144 0 0 chr11 56036823 56036955 -92746517 + FLAM_C SINE Alu 1 132 -1 1664 189 88 34 chr11 56036955 56037001 -92746471 + L1M4 LINE L1 5287 5329 -855 2666 120 52 0 chr11 56037001 56037408 -92746064 - MSTA LTR MaLR 0 428 1 1664 189 88 34 chr11 56037408 56037813 -92745659 + L1M4 LINE L1 5329 5759 -425 2231 101 10 10 chr11 56037826 56038134 -92745338 + AluSx SINE Alu 1 308 -4 186 43 0 0 chr11 56038293 56038316 -92745156 + (A)n Simple_repeat Simple_repeat 1 23 0 2352 98 0 19 chr11 56039281 56039596 -92743876 - AluY SINE Alu -2 309 1 2350 99 0 0 chr11 56039596 56039888 -92743584 - AluSq SINE Alu -21 292 1 232 254 0 0 chr11 56040006 56040065 -92743407 - L1ME4a LINE L1 0 6121 6063 709 134 17 0 chr11 56040087 56040206 -92743266 + FAM SINE Alu 1 44 -5 2737 209 36 3 chr11 56040272 56040879 -92742593 - L1MC3 LINE L1 -1 7784 7158 2068 125 14 7 chr11 56041016 56041313 -92742159 - AluSx SINE Alu -13 299 1 523 319 55 4 chr11 56041466 56041701 -92741771 - MIR SINE MIR -1 261 15 635 263 101 18 chr11 56041732 56041956 -92741516 + MIR SINE MIR 15 262 0 441 66 0 0 chr11 56042024 56042085 -92741387 + (TCCA)n Simple_repeat Simple_repeat 1 61 0 1333 230 56 20 chr11 56042180 56042588 -92740884 - Charlie4a DNA MER1_type -80 428 6 201 39 0 0 chr11 56043218 56043244 -92740228 + (CA)n Simple_repeat Simple_repeat 2 27 0 2312 156 45 7 chr11 56043453 56043856 -92739616 - MER47B DNA MER2_type 0 418 1 2169 129 46 13 chr11 56044349 56044722 -92738750 - MLT1B LTR MaLR -5 385 1 755 260 94 24 chr11 56045566 56045854 -92737618 - L1ME3 LINE L1 -2 6160 5853 1472 220 85 45 chr11 56046005 56046405 -92737067 + MLT1G LTR MaLR 175 590 0 2501 149 11 44 chr11 56046790 56047046 -92736426 - MSTB LTR MaLR -5 421 183 2345 103 0 3 chr11 56047046 56047347 -92736125 + AluSg1 SINE Alu 1 300 -9 2501 149 11 44 chr11 56047347 56047525 -92735947 - MSTB LTR MaLR -243 183 1 9216 166 12 8 chr11 56047525 56049168 -92734304 - MSTB-int LTR MaLR 0 1651 2 2155 145 39 39 chr11 56049170 56049420 -92734052 - MSTB LTR MaLR 0 426 174 7624 77 23 8 chr11 56049420 56050476 -92732996 + MER11C LTR ERVK 1 1071 0 2155 145 39 39 chr11 56050476 56050611 -92732861 - MSTB LTR MaLR -251 175 41 401 117 2 0 chr11 56050654 56050718 -92732754 - MSTB LTR MaLR -363 65 1 2127 117 53 11 chr11 56050793 56051153 -92732319 + THE1C LTR MaLR 1 375 0 546 286 39 43 chr11 56051228 56051473 -92731999 + MIR SINE MIR 12 254 -8 1928 148 7 58 chr11 56052029 56052461 -92731011 - L1MB8 LINE L1 0 6178 5769 2038 112 66 0 chr11 56052655 56052942 -92730530 - AluSx SINE Alu -6 306 1 21 0 0 0 chr11 56052965 56052986 -92730486 + AT_rich Low_complexity Low_complexity 1 21 0 320 270 76 15 chr11 56052993 56053234 -92730238 + MARNA DNA Mariner 79 386 -200 306 324 73 7 chr11 56053707 56053843 -92729629 - MER5B DNA MER1_type -33 145 1 1738 174 0 40 chr11 56053979 56054301 -92729171 + AluJo SINE Alu 1 309 -3 184 250 0 0 chr11 56054562 56054602 -92728870 - MIR3 SINE MIR -9 199 160 367 248 64 8 chr11 56054617 56054742 -92728730 + MLT1J2 LTR MaLR 3 134 -316 2042 127 53 53 chr11 56054747 56054954 -92728518 + MLT1A1 LTR MaLR 1 210 -155 1974 138 41 36 chr11 56054954 56055316 -92728156 + THE1B LTR MaLR 1 364 0 2042 127 53 53 chr11 56055316 56055469 -92728003 + MLT1A1 LTR MaLR 209 361 -4 6176 210 99 40 chr11 56055474 56056974 -92726498 + MLT1A1-int LTR MaLR 1 1595 -140 1921 151 10 7 chr11 56056974 56057266 -92726206 - AluSx SINE Alu -18 294 2 6176 210 99 40 chr11 56057266 56057295 -92726177 + MLT1A1-int LTR MaLR 1595 1621 -114 1691 180 19 61 chr11 56057305 56057400 -92726072 + MLT1A1 LTR MaLR 2 99 -266 2164 115 3 0 chr11 56057400 56057687 -92725785 + AluSx SINE Alu 11 298 -14 1691 180 19 61 chr11 56057687 56057969 -92725503 + MLT1A1 LTR MaLR 99 363 -2 604 244 60 0 chr11 56058010 56058178 -92725294 + MLT1J2 LTR MaLR 241 418 -32 209 196 0 39 chr11 56058534 56058585 -92724887 + G-rich Low_complexity Low_complexity 4 52 0 240 297 34 51 chr11 56059425 56059543 -92723929 + MIR SINE MIR 32 147 -115 200 321 112 32 chr11 56062071 56062411 -92721061 + L2 LINE L2 2904 3270 -2 721 143 24 0 chr11 56062493 56062619 -92720853 + FLAM_C SINE Alu 5 133 0 209 224 15 15 chr11 56062814 56062881 -92720591 + (CA)n Simple_repeat Simple_repeat 2 68 0 2364 78 0 10 chr11 56063321 56063617 -92719855 + AluSq SINE Alu 13 305 -8 2601 50 0 3 chr11 56063744 56064042 -92719430 - AluY SINE Alu -13 298 2 202 116 0 70 chr11 56064392 56064435 -92719037 + (CCCTG)n Simple_repeat Simple_repeat 1 40 0 357 250 62 0 chr11 56065108 56065220 -92718252 - MIR3 SINE MIR 0 208 90 346 324 88 6 chr11 56065329 56065499 -92717973 - MIR SINE MIR -1 261 78 4562 264 165 24 chr11 56065694 56068148 -92715324 - L2 LINE L2 0 3272 344 291 265 29 81 chr11 56068288 56068424 -92715048 - MIR SINE MIR -75 187 59 252 337 130 18 chr11 56070567 56070736 -92712736 + MIR SINE MIR 58 245 -17 762 265 64 24 chr11 56070763 56071012 -92712460 + MIR SINE MIR 2 260 -2 252 0 0 0 chr11 56071551 56071579 -92711893 + (A)n Simple_repeat Simple_repeat 1 28 0 200 341 135 8 chr11 56072465 56072591 -92710881 + L2 LINE L2 2582 2723 -591 756 299 62 59 chr11 56072763 56073184 -92710288 + L2 LINE L2 2849 3270 -2 268 233 62 70 chr11 56073682 56073811 -92709661 - L3 LINE CR1 -7 1570 1443 231 88 0 0 chr11 56074184 56074218 -92709254 + (TG)n Simple_repeat Simple_repeat 1 34 0 2591 88 0 33 chr11 56075883 56076281 -92707191 - L1PA5 LINE L1 0 6154 5770 221 254 45 30 chr11 56077108 56077175 -92706297 - MIR3 SINE MIR -21 187 120 1731 191 3 7 chr11 56077842 56078141 -92705331 - AluJb SINE Alu -14 298 1 205 355 112 9 chr11 56078693 56078800 -92704672 - L2 LINE L2 -9 3263 3146 221 0 35 0 chr11 56080535 56080564 -92702908 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 265 300 144 11 chr11 56080681 56080771 -92702701 - MIR SINE MIR -1 261 160 215 224 224 13 chr11 56082211 56082287 -92701185 + MIR SINE MIR 68 159 -103 382 253 13 80 chr11 56082295 56082445 -92701027 - MLT1K LTR MaLR -3 585 446 388 253 108 51 chr11 56082636 56082794 -92700678 - MLT1K LTR MaLR -411 177 11 193 239 28 42 chr11 56082829 56082900 -92700572 + MIR SINE MIR 163 232 -30 616 146 10 0 chr11 56083049 56083152 -92700320 + U13 snRNA snRNA 1 104 0 26 0 0 0 chr11 56087089 56087115 -92696357 + GC_rich Low_complexity Low_complexity 1 26 0 1022 192 35 28 chr11 56087156 56087411 -92696061 - MER33 DNA MER1_type -67 257 1 2283 111 7 0 chr11 56087495 56087802 -92695670 - AluSg1 SINE Alu 0 309 1 289 339 130 28 chr11 56087880 56088057 -92695415 - MIR SINE MIR -66 196 2 260 256 43 43 chr11 56088088 56088205 -92695267 + L3 LINE CR1 1405 1521 -56 724 268 33 24 chr11 56089413 56089626 -92693846 - MIR SINE MIR -12 250 36 516 238 219 0 chr11 56093752 56093916 -92689556 - MIR SINE MIR 0 262 63 218 143 20 0 chr11 56094467 56094516 -92688956 + GA-rich Low_complexity Low_complexity 1 50 0 200 222 0 19 chr11 56095303 56095343 -92688129 + (TAA)n Simple_repeat Simple_repeat 3 43 -12 3717 51 0 2 chr11 56095343 56095795 -92687677 + L1PA8 LINE L1 5709 6159 -13 200 222 0 19 chr11 56095795 56095808 -92687664 + (TAA)n Simple_repeat Simple_repeat 43 55 0 211 185 0 56 chr11 56095808 56095862 -92687610 - MIR SINE MIR 0 262 212 229 301 113 30 chr11 56095941 56096074 -92687398 + MIR SINE MIR 117 260 -2 * 479 271 23 95 chr11 56096071 56096292 -92687180 - MIR SINE MIR -57 205 1 180 0 0 0 chr11 56097315 56097335 -92686137 + (T)n Simple_repeat Simple_repeat 1 20 0 334 274 162 50 chr11 56098000 56098179 -92685293 - MIR3 SINE MIR 0 208 10 247 271 0 0 chr11 56098725 56098784 -92684688 - L2 LINE L2 -212 3060 3002 2123 97 0 39 chr11 56099914 56100225 -92683247 - AluSx SINE Alu -13 299 1 334 259 63 14 chr11 56100308 56100451 -92683021 + MIR SINE MIR 29 178 -84 221 280 66 37 chr11 56100443 56100593 -92682879 - MIR SINE MIR -76 132 3 * 412 298 45 40 chr11 56100884 56101082 -92682390 - MIR SINE MIR -50 212 14 406 211 48 10 chr11 56201342 56201446 -92582026 + L2 LINE L2 2588 2695 -619 185 108 27 0 chr11 56201452 56201489 -92581983 + (TATAA)n Simple_repeat Simple_repeat 3 40 0 1932 107 43 47 chr11 56201510 56201810 -92581662 - AluSx SINE Alu -13 299 1 2210 141 123 10 chr11 56202001 56202384 -92581088 - MSTA LTR MaLR 0 428 3 5013 107 8 74 chr11 56202386 56203263 -92580209 - MSTA-int LTR MaLR 0 1580 762 1183 173 108 16 chr11 56203271 56203520 -92579952 - MSTA LTR MaLR -156 272 1 211 250 125 0 chr11 56203523 56203595 -92579877 + L2 LINE L2 2934 3014 -299 2037 135 3 3 chr11 56203600 56203896 -92579576 - AluJb SINE Alu -11 301 6 341 85 0 0 chr11 56203896 56203943 -92579529 - THE1-int LTR MaLR -569 1011 965 499 305 112 54 chr11 56203965 56204192 -92579280 + L2 LINE L2 3033 3245 -68 387 0 0 0 chr11 56204192 56204235 -92579237 + (CA)n Simple_repeat Simple_repeat 2 44 0 2074 130 0 0 chr11 56204241 56204518 -92578954 - AluJb SINE Alu -31 281 5 499 305 112 54 chr11 56204518 56204542 -92578930 + L2 LINE L2 3249 3306 -7 1453 85 5 45 chr11 56205398 56205627 -92577845 - AluY SINE Alu 0 311 91 945 141 182 6 chr11 56205634 56205804 -92577668 + AluSg/x SINE Alu 102 301 -9 841 227 22 44 chr11 56205822 56206095 -92577377 - L1M4 LINE L1 -1404 4742 4476 240 111 0 0 chr11 56206095 56206131 -92577341 - Alu SINE Alu -266 36 1 2352 120 19 21 chr11 56206151 56206526 -92576946 + THE1C LTR MaLR 2 375 0 1663 112 0 0 chr11 56206656 56206870 -92576602 + AluSg SINE Alu 1 214 -96 1569 158 27 34 chr11 56207092 56207390 -92576082 + AluSx SINE Alu 1 296 -16 232 254 0 16 chr11 56207454 56207517 -92575955 + (CATA)n Simple_repeat Simple_repeat 1 62 0 482 286 15 8 chr11 56207517 56207650 -92575822 - LTR49-int LTR ERV1 -4231 2100 1967 1041 128 0 0 chr11 56207657 56207790 -92575682 - AluSq/x SINE Alu -179 133 1 1232 154 41 161 chr11 56207791 56207979 -92575493 - LTR49-int LTR ERV1 -4350 1981 1772 2078 133 19 10 chr11 56207979 56208288 -92575184 + AluJb SINE Alu 1 312 0 1232 154 41 161 chr11 56208288 56208462 -92575010 - LTR49-int LTR ERV1 -4559 1772 1679 2418 77 7 3 chr11 56208462 56208761 -92574711 + AluSg SINE Alu 1 300 -10 1232 154 41 161 chr11 56208761 56208837 -92574635 - LTR49-int LTR ERV1 -4652 1679 1595 1188 182 6 63 chr11 56208839 56209157 -92574315 + AluSq SINE Alu 1 300 -3 739 135 0 0 chr11 56209291 56209395 -92574077 - FLAM_C SINE Alu -35 108 5 2301 121 0 6 chr11 56209494 56209807 -92573665 - AluSx SINE Alu -1 311 1 1100 266 10 14 chr11 56209995 56210288 -92573184 - MLT1H LTR MaLR -245 304 13 28 0 0 0 chr11 56210549 56210577 -92572895 + AT_rich Low_complexity Low_complexity 1 28 0 270 0 0 0 chr11 56210629 56210659 -92572813 + (CA)n Simple_repeat Simple_repeat 2 31 0 2175 133 10 7 chr11 56210931 56211233 -92572239 - AluSx SINE Alu -9 303 1 281 276 0 13 chr11 56211460 56211536 -92571936 - MIR SINE MIR -5 257 183 999 172 0 13 chr11 56212296 56212453 -92571019 + AluJb SINE Alu 9 163 -149 206 322 126 0 chr11 56212925 56213068 -92570404 - MIR SINE MIR -6 256 96 1959 183 0 6 chr11 56213068 56213379 -92570093 + AluJb SINE Alu 1 309 -3 766 137 14 7 chr11 56213391 56213530 -92569942 + GA-rich Low_complexity Low_complexity 2 141 0 2310 92 0 0 chr11 56213751 56214056 -92569416 - AluSq SINE Alu 0 305 1 2096 132 0 3 chr11 56214117 56214406 -92569066 - AluJb SINE Alu -22 290 3 373 208 176 135 chr11 56214970 56215090 -92568382 - LTR37B LTR ERV1 0 468 354 261 0 0 0 chr11 56215090 56215119 -92568353 + (TG)n Simple_repeat Simple_repeat 1 29 0 373 208 176 135 chr11 56215119 56215179 -92568293 - LTR37B LTR ERV1 -114 354 298 2545 158 37 41 chr11 56215179 56215416 -92568056 + MER66B LTR ERV1 1 237 -249 1980 133 3 3 chr11 56215416 56215742 -92567730 - AluSq SINE Alu 0 326 1 2545 158 37 41 chr11 56215742 56215991 -92567481 + MER66B LTR ERV1 237 486 0 373 208 176 135 chr11 56215991 56216150 -92567322 - LTR37B LTR ERV1 -170 298 114 745 204 6 18 chr11 56216152 56216319 -92567153 + MER105 DNA DNA 2 166 -38 2219 129 10 0 chr11 56216383 56216692 -92566780 - AluSx SINE Alu 0 312 1 608 274 54 5 chr11 56217356 56217542 -92565930 + MIR SINE MIR 12 206 -56 225 176 8 136 chr11 56218003 56218128 -92565344 - MER53 DNA DNA 0 189 81 1014 178 0 22 chr11 56218140 56218325 -92565147 - AluJo SINE Alu -10 302 122 2073 113 17 3 chr11 56218501 56218792 -92564680 - AluSx SINE Alu -17 295 1 198 0 0 0 chr11 56218795 56218817 -92564655 + (T)n Simple_repeat Simple_repeat 1 22 0 183 316 102 0 chr11 56218979 56219077 -92564395 + MIR SINE MIR 85 192 -70 24 32 0 0 chr11 56219918 56219949 -92563523 + GC_rich Low_complexity Low_complexity 1 31 0 213 289 73 83 chr11 56220227 56220431 -92563041 + MIR SINE MIR 11 212 -50 237 65 0 0 chr11 56220666 56220697 -92562775 + (TG)n Simple_repeat Simple_repeat 1 31 0 353 275 76 30 chr11 56220733 56220864 -92562608 + MIR SINE MIR 14 150 -112 996 170 57 38 chr11 56220868 56221080 -92562392 - MER20 DNA MER1_type -3 216 1 219 167 0 0 chr11 56221093 56221135 -92562337 + CT-rich Low_complexity Low_complexity 4 45 0 248 154 19 19 chr11 56221166 56221218 -92562254 + MER112 DNA MER1_type 208 259 -1 275 262 8 24 chr11 56221776 56221930 -92561542 + (CCAA)n Simple_repeat Simple_repeat 1 151 0 2430 79 0 0 chr11 56222423 56222714 -92560758 + AluSx SINE Alu 6 296 -16 420 214 48 19 chr11 56222748 56222851 -92560621 + MIR SINE MIR 68 173 -89 2296 97 0 10 chr11 56222867 56223167 -92560305 + AluSg SINE Alu 1 297 -13 1839 146 86 0 chr11 56223350 56223630 -92559842 + AluSg SINE Alu 1 304 -6 2589 71 0 0 chr11 56224225 56224533 -92558939 + AluSg SINE Alu 1 308 -2 388 197 87 71 chr11 56224564 56224691 -92558781 + FLAM_C SINE Alu 1 129 -4 2281 122 3 3 chr11 56224702 56225013 -92558459 + AluSq SINE Alu 1 311 -2 2244 95 0 17 chr11 56225013 56225308 -92558164 + AluSg SINE Alu 1 290 -20 2417 77 0 3 chr11 56225308 56225608 -92557864 + AluY SINE Alu 1 299 -12 2050 116 63 0 chr11 56225619 56225904 -92557568 + AluSx SINE Alu 1 303 -9 1481 184 28 21 chr11 56226481 56226763 -92556709 + AluJo SINE Alu 13 296 -16 1194 78 0 0 chr11 56227051 56227192 -92556280 - AluSx SINE Alu -16 296 156 611 138 0 0 chr11 56227192 56227279 -92556193 - AluSx SINE Alu -225 87 1 248 192 0 19 chr11 56227576 56227628 -92555844 + MIR3 SINE MIR 105 155 -53 1070 283 72 25 chr11 56228951 56229351 -92554121 + L2 LINE L2 2895 3313 0 2163 118 3 0 chr11 56229418 56229707 -92553765 - AluSx SINE Alu -22 290 1 2165 129 3 3 chr11 56230252 56230561 -92552911 - AluSx SINE Alu -3 309 1 2167 141 3 0 chr11 56230745 56231043 -92552429 + AluSx SINE Alu 1 299 -13 2279 112 0 3 chr11 56231045 56231341 -92552131 + AluSx SINE Alu 1 295 -17 825 237 0 37 chr11 56231496 56231686 -92551786 - FRAM SINE Alu 0 176 1 1084 123 73 78 chr11 56232398 56232617 -92550855 - MER20 DNA MER1_type -1 218 1 2421 81 7 0 chr11 56232678 56232973 -92550499 - AluSc SINE Alu -6 303 7 262 298 60 11 chr11 56233162 56233273 -92550199 - MIR SINE MIR -78 130 12 336 254 54 115 chr11 56233774 56233971 -92549501 - MIR SINE MIR -56 206 19 195 368 0 0 chr11 56233990 56234058 -92549414 + L3b LINE CR1 1395 1462 -121 2375 72 0 44 chr11 56234147 56234465 -92549007 - AluY SINE Alu -7 304 1 2300 117 0 7 chr11 56234486 56234795 -92548677 - AluSx SINE Alu -5 307 1 2725 200 106 35 chr11 56234932 56235668 -92547804 - MER21B LTR ERV1 -57 806 19 1813 179 0 0 chr11 56236617 56236908 -92546564 - AluJo SINE Alu -1 311 21 449 237 131 88 chr11 56236979 56237253 -92546219 - MLT1H LTR MaLR 0 549 264 231 306 82 11 chr11 56237484 56237623 -92545849 - MIR SINE MIR -38 224 37 1347 136 5 0 chr11 56237623 56237807 -92545665 - AluSp SINE Alu -20 293 109 2227 117 13 0 chr11 56237807 56238107 -92545365 - AluSx SINE Alu -8 304 1 920 152 0 0 chr11 56238107 56238258 -92545214 - MLT2B1 LTR ERVL -369 151 1 297 296 83 0 chr11 56238515 56238623 -92544849 - MIR SINE MIR -74 188 72 1919 160 0 3 chr11 56238795 56239088 -92544384 + AluSx SINE Alu 1 292 -20 1890 156 3 23 chr11 56239193 56239395 -92544077 - AluJo SINE Alu -7 305 110 2083 130 3 10 chr11 56239395 56239696 -92543776 + AluSx SINE Alu 1 299 -13 1890 156 3 23 chr11 56239696 56239800 -92543672 - AluJo SINE Alu -202 110 5 2301 121 0 6 chr11 56239899 56240212 -92543260 - AluSx SINE Alu -1 311 1 1100 266 10 14 chr11 56240400 56240693 -92542779 - MLT1H LTR MaLR -245 304 13 28 0 0 0 chr11 56240954 56240982 -92542490 + AT_rich Low_complexity Low_complexity 1 28 0 288 0 0 0 chr11 56241034 56241066 -92542406 + (CA)n Simple_repeat Simple_repeat 2 33 0 2175 133 10 7 chr11 56241339 56241641 -92541831 - AluSx SINE Alu -9 303 1 265 276 0 13 chr11 56241868 56241944 -92541528 - MIR SINE MIR -5 257 183 205 261 32 147 chr11 56242623 56242704 -92540768 - MIR SINE MIR -109 153 97 1994 134 29 0 chr11 56242704 56242979 -92540493 + AluSx SINE Alu 9 291 -21 205 261 32 147 chr11 56242979 56243054 -92540418 - MIR SINE MIR -165 97 15 2305 127 0 0 chr11 56243464 56243772 -92539700 - AluSg SINE Alu -2 308 1 1051 164 0 12 chr11 56243811 56243976 -92539496 + AluJb SINE Alu 1 163 -149 268 265 64 105 chr11 56244448 56244591 -92538881 - MIR SINE MIR -6 256 109 1965 183 0 6 chr11 56244591 56244902 -92538570 + AluJb SINE Alu 1 309 -3 268 265 64 105 chr11 56244902 56244921 -92538551 - MIR SINE MIR -153 109 91 1260 89 0 0 chr11 56244921 56245101 -92538371 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 268 265 64 105 chr11 56245101 56245156 -92538316 - MIR SINE MIR -171 91 47 407 196 0 31 chr11 56245337 56245434 -92538038 + 7SLRNA srpRNA srpRNA 211 304 -16 1965 153 0 26 chr11 56245460 56245773 -92537699 + AluJb SINE Alu 1 305 -7 248 266 64 55 chr11 56246137 56246246 -92537226 + L2 LINE L2 3162 3271 -1 2242 92 3 7 chr11 56246283 56246602 -92536870 - AluSx SINE Alu 0 318 1 2148 95 15 4 chr11 56246893 56247197 -92536275 - AluSq SINE Alu 0 313 7 1751 111 0 4 chr11 56247639 56247874 -92535598 + AluSx SINE Alu 1 234 -78 1047 90 5 101 chr11 56247874 56248062 -92535410 - MER51B LTR ERV1 -205 172 3 632 154 39 23 chr11 56248062 56248166 -92535306 - AluJo SINE Alu -74 238 130 2112 101 0 0 chr11 56248166 56248433 -92535039 - AluSg SINE Alu -11 299 33 632 154 39 23 chr11 56248433 56248451 -92535021 - AluJo SINE Alu -182 130 114 552 114 0 0 chr11 56248451 56248530 -92534942 + AluS SINE Alu 2 80 -232 261 272 117 0 chr11 56248542 56248645 -92534827 - L2 LINE L2 0 3313 3199 1848 161 125 10 chr11 56249558 56249942 -92533530 - MSTA LTR MaLR 0 428 1 1029 101 0 14 chr11 56250069 56250207 -92533265 + AluSq/x SINE Alu 1 136 -176 2264 129 0 0 chr11 56250207 56250518 -92532954 + AluSx SINE Alu 1 311 -1 1270 287 98 35 chr11 56251274 56251376 -92532096 - MLT1K LTR MaLR -2 586 492 2377 90 3 6 chr11 56251376 56251688 -92531784 + AluY SINE Alu 1 311 0 1270 287 98 35 chr11 56251688 56251973 -92531499 - MLT1K LTR MaLR -96 492 151 2069 202 100 22 chr11 56251973 56252523 -92530949 + MLT1E LTR MaLR 1 593 0 1270 287 98 35 chr11 56252523 56252684 -92530788 - MLT1K LTR MaLR -437 151 2 226 298 180 22 chr11 56252725 56252903 -92530569 - L2 LINE L2 -1063 2251 2046 510 338 91 20 chr11 56252977 56253374 -92530098 - L2 LINE L2 -1070 2244 1820 1996 127 33 0 chr11 56253381 56253691 -92529781 + AluSq SINE Alu 1 319 0 1098 183 9 39 chr11 56253911 56254141 -92529331 - MER58A DNA MER1_type -1 223 1 2135 103 68 0 chr11 56254276 56254568 -92528904 - AluSp SINE Alu -1 312 1 1782 130 11 128 chr11 56254809 56255162 -92528310 + AluJo SINE Alu 1 312 0 197 175 125 0 chr11 56255321 56255361 -92528111 + L2 LINE L2 3004 3048 -224 205 335 52 48 chr11 56256048 56256278 -92527194 + L2 LINE L2 2827 3057 -215 2189 96 35 0 chr11 56257332 56257614 -92525858 + AluSg SINE Alu 1 292 -18 1801 144 34 17 chr11 56257635 56257926 -92525546 + AluJo SINE Alu 6 301 -11 719 171 50 0 chr11 56257975 56258115 -92525357 - MER3 DNA MER1_type -5 204 58 289 93 0 56 chr11 56258683 56258737 -92524735 - MER3 DNA MER1_type -158 51 1 297 271 74 16 chr11 56258739 56258801 -92524671 - MIR3 SINE MIR -50 158 101 2152 128 0 0 chr11 56258801 56259090 -92524382 - AluSq SINE Alu -21 292 4 1651 136 4 0 chr11 56259090 56259325 -92524147 - AluJo SINE Alu -76 236 1 297 271 74 16 chr11 56259325 56259383 -92524089 - MIR3 SINE MIR -106 102 30 21 36 0 0 chr11 56260239 56260267 -92523205 + GC_rich Low_complexity Low_complexity 1 28 0 210 248 0 91 chr11 56260287 56260408 -92523064 + G-rich Low_complexity Low_complexity 2 111 0 248 111 22 0 chr11 56260980 56261025 -92522447 + (TG)n Simple_repeat Simple_repeat 1 46 0 332 307 109 10 chr11 56263144 56263336 -92520136 - MIR SINE MIR -2 260 50 2392 92 0 7 chr11 56263957 56264262 -92519210 + AluSx SINE Alu 1 303 -9 1842 114 122 0 chr11 56264759 56265030 -92518442 - AluSx SINE Alu -4 308 5 1405 171 78 11 chr11 56265234 56265503 -92517969 - AluJo SINE Alu -25 287 1 477 314 26 93 chr11 56265557 56265901 -92517571 + L2 LINE L2 2952 3272 0 2489 91 3 0 chr11 56266057 56266366 -92517106 - AluSx SINE Alu -2 310 1 219 111 32 16 chr11 56271459 56271522 -92511950 + CT-rich Low_complexity Low_complexity 1 64 0 6069 73 17 7 chr11 56272377 56273201 -92510271 + HERVL-A2 LTR ERVL 4823 5654 0 3041 108 16 0 chr11 56273202 56273645 -92509827 + MLT2A2 LTR ERVL 2 451 -2 467 276 51 46 chr11 56273685 56273902 -92509570 + MIR SINE MIR 29 246 -16 1984 95 6 88 chr11 56273929 56274246 -92509226 + AluSc SINE Alu 2 292 -17 2271 108 0 9 chr11 56274254 56274569 -92508903 + AluSx SINE Alu 1 312 0 1621 49 9 13 chr11 56275156 56275381 -92508091 + L1PA4 LINE L1 5929 6152 -3 2040 152 0 0 chr11 56275485 56275802 -92507670 - AluSx SINE Alu 0 312 1 2097 132 0 3 chr11 56275829 56276125 -92507347 + AluSq SINE Alu 19 313 0 2337 112 0 0 chr11 56276271 56276576 -92506896 + AluSx SINE Alu 1 305 -7 2270 110 7 3 chr11 56276934 56277233 -92506239 + AluSx SINE Alu 1 300 -12 23 0 0 0 chr11 56280014 56280037 -92503435 + AT_rich Low_complexity Low_complexity 1 23 0 2054 123 0 36 chr11 56280103 56280405 -92503067 + AluSx SINE Alu 1 291 -21 359 175 243 12 chr11 56281135 56281251 -92502221 - FLAM_C SINE Alu 0 133 3 317 326 43 14 chr11 56283624 56283765 -92499707 - MIR SINE MIR -6 256 112 2285 92 17 0 chr11 56283794 56284088 -92499384 - AluSp SINE Alu -14 299 1 264 278 93 37 chr11 56284148 56284256 -92499216 - MIR SINE MIR -121 141 28 2253 121 0 13 chr11 56285240 56285555 -92497917 - AluSx SINE Alu -1 311 1 309 311 56 0 chr11 56285871 56285961 -92497511 + L2 LINE L2 3140 3234 -38 589 211 7 49 chr11 56286372 56286514 -92496958 - FLAM_C SINE Alu -1 142 7 2203 118 0 0 chr11 56286866 56287162 -92496310 - AluSx SINE Alu -16 296 1 832 127 71 0 chr11 56287779 56287905 -92495567 - AluSq/x SINE Alu -177 135 1 535 107 0 0 chr11 56288036 56288111 -92495361 - AluSg/x SINE Alu -30 282 208 464 313 176 20 chr11 56288112 56288464 -92495008 + L2 LINE L2 2313 2719 -595 1784 122 20 0 chr11 56288471 56288717 -92494755 + AluSx SINE Alu 26 276 -36 517 212 5 33 chr11 56288724 56288908 -92494564 + GA-rich Low_complexity Low_complexity 1 179 0 2197 84 10 17 chr11 56288938 56289234 -92494238 + AluSp SINE Alu 1 294 -19 672 169 0 34 chr11 56289310 56289428 -92494044 + FLAM_A SINE Alu 2 115 -18 2376 104 0 13 chr11 56289428 56289736 -92493736 - AluSq SINE Alu -9 304 1 736 188 60 0 chr11 56289771 56289920 -92493552 - AluSg/x SINE Alu -18 292 135 704 271 222 14 chr11 56289931 56290382 -92493090 + L2 LINE L2 2771 3313 0 2125 107 7 14 chr11 56290714 56291004 -92492468 + AluSg SINE Alu 1 288 -22 23 33 0 0 chr11 56291159 56291189 -92492283 + AT_rich Low_complexity Low_complexity 1 30 0 2163 114 7 0 chr11 56292350 56292640 -92490832 - AluSx SINE Alu -20 292 1 2237 112 0 16 chr11 56293624 56293928 -92489544 + AluSx SINE Alu 1 299 -13 834 178 0 0 chr11 56293939 56294074 -92489398 + AluJb SINE Alu 1 135 -177 2115 114 0 33 chr11 56294074 56294408 -92489064 + AluSx SINE Alu 1 324 0 389 264 202 17 chr11 56294433 56294611 -92488861 + L2 LINE L2 3103 3313 0 258 265 78 49 chr11 56294769 56294871 -92488601 + MIR SINE MIR 17 121 -87 260 195 49 73 chr11 56295736 56295818 -92487654 + L2 LINE L2 3193 3272 0 234 203 0 85 chr11 56296022 56296081 -92487391 + MIR SINE MIR 65 118 -90 839 92 0 0 chr11 56296085 56296194 -92487278 - AluJb SINE Alu -7 305 197 403 279 18 9 chr11 56296202 56296313 -92487159 + MIR SINE MIR 125 236 -26 375 256 131 7 chr11 56296426 56296563 -92486909 - MIR SINE MIR -82 180 27 2398 79 0 0 chr11 56296586 56296878 -92486594 + AluSx SINE Alu 1 292 -20 2520 65 0 3 chr11 56296888 56297197 -92486275 + AluY SINE Alu 1 308 -3 473 236 32 24 chr11 56297199 56297322 -92486150 - MIR SINE MIR -11 251 128 198 0 0 0 chr11 56297520 56297542 -92485930 + (T)n Simple_repeat Simple_repeat 1 22 0 28 29 0 0 chr11 56297555 56297590 -92485882 + GC_rich Low_complexity Low_complexity 1 35 0 2109 110 3 14 chr11 56297765 56298056 -92485416 - AluSg SINE Alu -22 288 1 819 271 222 14 chr11 56298388 56298839 -92484633 - L2 LINE L2 0 3313 2771 797 188 60 0 chr11 56298850 56298999 -92484473 + AluSg/x SINE Alu 137 294 -18 2191 109 0 26 chr11 56299034 56299346 -92484126 + AluSq SINE Alu 1 304 -9 724 169 0 34 chr11 56299346 56299464 -92484008 - FLAM_A SINE Alu -18 115 2 2039 98 10 24 chr11 56299540 56299837 -92483635 - AluSp SINE Alu -20 293 1 385 229 6 27 chr11 56299867 56300050 -92483422 + CT-rich Low_complexity Low_complexity 1 179 0 1759 126 20 0 chr11 56300057 56300303 -92483169 - AluSx SINE Alu -36 276 26 523 301 179 23 chr11 56300310 56300662 -92482810 - L2 LINE L2 -595 2719 2313 572 107 0 0 chr11 56300663 56300738 -92482734 + AluSg/x SINE Alu 206 280 -30 189 333 69 10 chr11 56300761 56300863 -92482609 - L2 LINE L2 -1734 1580 1473 813 135 71 0 chr11 56300869 56300995 -92482477 + AluSq/x SINE Alu 1 135 -178 2145 121 10 0 chr11 56301612 56301909 -92481563 + AluSx SINE Alu 1 300 -12 2189 102 7 0 chr11 56301958 56302251 -92481221 - AluSg SINE Alu -15 295 1 207 0 0 0 chr11 56303126 56303149 -92480323 + (A)n Simple_repeat Simple_repeat 1 23 0 2219 93 0 10 chr11 56305217 56305518 -92477954 - AluSx SINE Alu -14 298 1 2042 110 24 3 chr11 56305953 56306243 -92477229 + AluSx SINE Alu 1 296 -16 1336 58 103 0 chr11 56306579 56306753 -92476719 - AluSg/x SINE Alu -12 298 107 1974 136 0 14 chr11 56309336 56309631 -92473841 - AluSx SINE Alu -21 291 1 21 0 0 0 chr11 56310076 56310097 -92473375 + AT_rich Low_complexity Low_complexity 1 21 0 184 329 14 0 chr11 56312288 56312358 -92471114 + MIR3 SINE MIR 87 157 -51 2509 59 0 0 chr11 56312669 56312958 -92470514 - AluY SINE Alu -12 299 11 207 0 0 0 chr11 56313227 56313250 -92470222 + (TG)n Simple_repeat Simple_repeat 1 23 0 2154 122 7 0 chr11 56313824 56314142 -92469330 + AluSq SINE Alu 1 313 0 772 158 63 0 chr11 56314144 56314271 -92469201 + AluJb SINE Alu 131 265 -47 2239 74 7 7 chr11 56314280 56314576 -92468896 - AluSg SINE Alu -14 296 1 2299 69 35 0 chr11 56315807 56316095 -92467377 - AluSx SINE Alu -14 298 1 879 257 39 43 chr11 56316699 56316956 -92466516 - MIR SINE MIR 0 262 7 282 257 128 0 chr11 56317522 56317631 -92465841 + MIR SINE MIR 132 254 -8 1949 149 14 3 chr11 56317645 56317934 -92465538 - AluSx SINE Alu -20 292 1 2297 107 0 3 chr11 56317943 56318252 -92465220 - AluSg SINE Alu -2 308 1 300 196 14 0 chr11 56318452 56318514 -92464958 + MIR SINE MIR 92 141 -67 2249 105 16 3 chr11 56318574 56318880 -92464592 - AluSx SINE Alu -2 310 1 267 285 92 46 chr11 56318884 56319014 -92464458 - MIR SINE MIR -70 192 57 264 310 164 0 chr11 56319256 56319372 -92464100 - L2 LINE L2 -218 3054 2920 310 331 72 32 chr11 56319419 56319670 -92463802 - L2 LINE L2 -476 2838 2578 754 200 110 114 chr11 56319723 56319782 -92463690 + MIR SINE MIR 13 71 -191 918 150 0 0 chr11 56319782 56319915 -92463557 - FLAM_C SINE Alu 0 133 1 754 200 110 114 chr11 56319915 56320100 -92463372 + MIR SINE MIR 71 256 -6 842 171 0 0 chr11 56320126 56320255 -92463217 + AluJo/FLAM SINE Alu 1 129 -173 1719 183 35 7 chr11 56320256 56320545 -92462927 + AluJb SINE Alu 1 297 -15 2194 98 54 0 chr11 56320549 56320845 -92462627 + AluSx SINE Alu 1 312 0 493 333 82 31 chr11 56320848 56321166 -92462306 - L2 LINE L2 -808 2506 2173 385 307 62 56 chr11 56321344 56321523 -92461949 - L2 LINE L2 -50 3222 3043 687 252 0 0 chr11 56321523 56321658 -92461814 - FLAM_A SINE Alu -7 135 1 2324 82 27 0 chr11 56321724 56322016 -92461456 + AluSx SINE Alu 1 300 -12 23 0 0 0 chr11 56324797 56324820 -92458652 + AT_rich Low_complexity Low_complexity 1 23 0 2048 123 0 36 chr11 56324886 56325188 -92458284 + AluSx SINE Alu 1 291 -21 345 173 269 10 chr11 56325918 56326022 -92457450 - FLAM_C SINE Alu 0 133 3 336 326 43 14 chr11 56328408 56328549 -92454923 - MIR SINE MIR -6 256 112 2271 89 17 0 chr11 56328580 56328872 -92454600 - AluSp SINE Alu -16 297 1 293 278 93 37 chr11 56328932 56329040 -92454432 - MIR SINE MIR -121 141 28 356 298 120 44 chr11 56330898 56330948 -92452524 + MIR SINE MIR 37 82 -180 1592 94 184 12 chr11 56330948 56331193 -92452279 - AluSg1 SINE Alu -22 287 1 356 298 120 44 chr11 56331193 56331300 -92452172 + MIR SINE MIR 82 206 -56 1949 143 14 0 chr11 56331445 56331739 -92451733 - AluSx SINE Alu -14 298 1 1450 81 76 5 chr11 56331891 56332102 -92451370 - MER30 DNA MER1_type -4 226 1 3888 153 24 6 chr11 56332161 56332834 -92450638 + MER72 LTR ERV1 1 685 -37 1050 113 0 0 chr11 56332834 56332967 -92450505 + AluSq/x SINE Alu 1 133 -179 1722 149 0 77 chr11 56332971 56333105 -92450367 + AluSg SINE Alu 1 144 -166 1341 150 3 80 chr11 56333105 56333419 -92450053 + AluY SINE Alu 2 291 -20 1722 149 0 77 chr11 56333419 56333607 -92449865 + AluSg SINE Alu 144 298 -12 228 313 0 50 chr11 56334456 56334555 -92448917 + L2 LINE L2 2918 3011 -261 1983 126 32 3 chr11 56337191 56337476 -92445996 - AluJo SINE Alu -19 293 1 2213 112 3 28 chr11 56338117 56338438 -92445034 + AluSq SINE Alu 1 313 0 227 350 14 64 chr11 56338518 56338658 -92444814 + MIR3 SINE MIR 6 138 -70 1565 147 94 4 chr11 56338715 56338981 -92444491 - AluJo SINE Alu -22 290 1 2248 72 0 7 chr11 56338988 56339266 -92444206 - AluY SINE Alu -9 302 27 183 80 0 0 chr11 56339334 56339359 -92444113 + (CAT)n Simple_repeat Simple_repeat 2 26 0 2348 107 0 0 chr11 56339994 56340294 -92443178 + AluSx SINE Alu 1 300 -12 483 239 80 0 chr11 56340503 56340616 -92442856 + L2 LINE L2 3190 3311 -2 1928 154 7 3 chr11 56340911 56341210 -92442262 - AluJo SINE Alu -8 304 5 296 346 48 16 chr11 56341318 56341506 -92441966 + L2 LINE L2 2714 2907 -407 325 268 49 0 chr11 56341972 56342054 -92441418 + MIR SINE MIR 104 189 -73 2343 101 3 0 chr11 56342180 56342477 -92440995 + AluSp SINE Alu 1 298 -15 838 295 123 59 chr11 56342478 56342647 -92440825 + L2 LINE L2 2325 2482 -831 1899 163 0 10 chr11 56342647 56342941 -92440531 - AluJo SINE Alu -21 291 1 838 295 123 59 chr11 56342941 56343160 -92440312 + L2 LINE L2 2482 2685 -628 1599 213 0 0 chr11 56343160 56343451 -92440021 + AluJo SINE Alu 1 291 -21 838 295 123 59 chr11 56343451 56343781 -92439691 + L2 LINE L2 2685 2992 -321 1945 110 21 7 chr11 56343781 56344071 -92439401 - AluJo SINE Alu -18 294 1 838 295 123 59 chr11 56344071 56344265 -92439207 + L2 LINE L2 2992 3308 -5 235 301 9 62 chr11 56344265 56344396 -92439076 - MIR SINE MIR -61 147 43 2115 99 14 3 chr11 56344442 56344734 -92438738 - AluSx SINE Alu -17 295 1 439 246 86 78 chr11 56345283 56345345 -92438127 - L2 LINE L2 -756 2558 2498 1852 157 0 17 chr11 56345345 56345639 -92437833 + AluJo SINE Alu 1 289 -23 439 246 86 78 chr11 56345639 56345808 -92437664 - L2 LINE L2 -816 2498 2325 2302 101 3 0 chr11 56345809 56346106 -92437366 - AluSp SINE Alu -15 298 1 322 268 49 0 chr11 56346232 56346314 -92437158 - MIR SINE MIR -73 189 104 291 351 48 16 chr11 56346780 56346968 -92436504 - L2 LINE L2 -407 2907 2714 1898 151 7 3 chr11 56347076 56347375 -92436097 + AluJo SINE Alu 5 304 -8 481 254 82 0 chr11 56347672 56347782 -92435690 - L2 LINE L2 -5 3267 3149 1899 152 14 3 chr11 56347990 56348287 -92435185 - AluSx SINE Alu -12 300 1 1833 145 21 14 chr11 56348290 56348580 -92434892 - AluJb SINE Alu -20 292 1 312 218 10 50 chr11 56348691 56348737 -92434735 - L2 LINE L2 -58 3255 3209 2267 88 0 10 chr11 56348737 56349032 -92434440 - AluSg SINE Alu -18 292 1 312 218 10 50 chr11 56349032 56349086 -92434386 - L2 LINE L2 -104 3209 3159 355 293 194 14 chr11 56349753 56349975 -92433497 + MIR SINE MIR 1 262 0 476 263 67 106 chr11 56350030 56350081 -92433391 - MIR SINE MIR 0 262 211 1865 138 32 0 chr11 56350081 56350363 -92433109 - AluSx SINE Alu -21 291 1 476 263 67 106 chr11 56350363 56350566 -92432906 - MIR SINE MIR -51 211 18 2177 122 3 3 chr11 56350575 56350878 -92432594 - AluSq SINE Alu -10 303 1 2476 64 3 3 chr11 56351215 56351513 -92431959 - AluSp SINE Alu -14 299 2 2423 56 28 0 chr11 56351759 56352047 -92431425 + AluSp SINE Alu 5 300 -13 195 114 0 0 chr11 56352410 56352445 -92431027 + (TA)n Simple_repeat Simple_repeat 1 35 0 183 80 0 0 chr11 56352683 56352708 -92430764 + (GA)n Simple_repeat Simple_repeat 2 26 0 327 276 47 24 chr11 56355454 56355581 -92427891 - MIR SINE MIR -131 131 2 339 289 83 25 chr11 56355988 56356109 -92427363 + L2 LINE L2 3139 3266 -6 2019 147 0 7 chr11 56356255 56356561 -92426911 - AluJo SINE Alu -8 304 1 822 149 176 0 chr11 56356682 56356830 -92426642 + AluJb SINE Alu 1 174 -138 443 204 0 11 chr11 56356830 56356923 -92426549 + AluSg/x SINE Alu 218 309 -3 2101 98 34 3 chr11 56357758 56358054 -92425418 - AluSg SINE Alu -5 305 1 280 216 82 41 chr11 56358174 56358271 -92425201 - L1MC4 LINE L1 -16 8026 7926 685 256 135 0 chr11 56358347 56358554 -92424918 + MIR SINE MIR 2 236 -26 2275 108 0 0 chr11 56358630 56358927 -92424545 - AluSx SINE Alu -15 297 1 183 80 0 0 chr11 56359562 56359587 -92423885 + (ATG)n Simple_repeat Simple_repeat 2 26 0 2302 65 0 4 chr11 56359655 56359932 -92423540 + AluY SINE Alu 27 302 -9 1525 147 94 4 chr11 56359939 56360205 -92423267 + AluJo SINE Alu 1 290 -22 236 343 15 66 chr11 56360265 56360402 -92423070 - MIR3 SINE MIR -73 135 6 2166 112 3 28 chr11 56360482 56360803 -92422669 - AluSq SINE Alu 0 313 1 1936 126 32 3 chr11 56361444 56361729 -92421743 + AluJo SINE Alu 1 293 -19 232 320 0 48 chr11 56364365 56364468 -92419004 - L2 LINE L2 -261 3011 2914 241 300 149 58 chr11 56364787 56365204 -92418268 - L2 LINE L2 -831 2483 2029 1857 129 10 26 chr11 56365314 56365617 -92417855 - AluSg SINE Alu -12 298 1 1580 91 24 5 chr11 56365644 56365853 -92417619 + AluSp SINE Alu 1 213 -100 2122 120 13 3 chr11 56366208 56366508 -92416964 + AluSq SINE Alu 1 303 -10 182 237 85 0 chr11 56366633 56366692 -92416780 - L2 LINE L2 -5 3308 3245 2176 118 13 7 chr11 56366711 56367017 -92416455 + AluSp SINE Alu 1 308 -5 2111 107 24 0 chr11 56367088 56367386 -92416086 + AluSx SINE Alu 1 305 -7 887 187 13 0 chr11 56367471 56367626 -92415846 + FRAM SINE Alu 1 156 -20 2086 129 0 7 chr11 56367663 56367958 -92415514 - AluSx SINE Alu -19 293 1 330 268 8 47 chr11 56368012 56368139 -92415333 - L1ME4a LINE L1 -62 6059 5938 2120 131 0 0 chr11 56368176 56368474 -92414998 - AluSx SINE Alu -14 298 1 1940 154 3 3 chr11 56368635 56368928 -92414544 + AluSx SINE Alu 3 295 -17 225 0 0 0 chr11 56369101 56369126 -92414346 + (T)n Simple_repeat Simple_repeat 1 25 0 1877 275 37 6 chr11 56369279 56369820 -92413652 - L2 LINE L2 -1093 2221 1664 1866 253 69 45 chr11 56370084 56370897 -92412575 - HAL1 LINE L1 0 2507 1676 932 277 0 22 chr11 56370999 56371230 -92412242 + L2 LINE L2 2540 2765 -549 429 313 57 28 chr11 56372378 56372554 -92410918 + MIR SINE MIR 48 228 -34 408 136 30 0 chr11 56372616 56372682 -92410790 - MLT2B1 LTR ERVL 0 520 453 14048 25 1 0 chr11 56372684 56375008 -92408464 - L1PA2 LINE L1 0 6155 3831 190 327 0 0 chr11 56375108 56375160 -92408312 - MIR3 SINE MIR -46 162 111 1301 193 3 77 chr11 56375236 56375356 -92408116 - AluJb SINE Alu -10 302 175 1847 132 38 7 chr11 56375356 56375645 -92407827 - AluSx SINE Alu -13 299 2 1301 193 3 77 chr11 56375645 56375850 -92407622 - AluJb SINE Alu -137 175 1 532 308 137 5 chr11 56376320 56376531 -92406941 + MIR SINE MIR 21 259 -3 242 157 0 0 chr11 56376680 56376731 -92406741 - L1MC4 LINE L1 -1339 6703 6653 12692 127 20 17 chr11 56377301 56378400 -92405072 - L1P3 LINE L1 -3214 3247 2153 2387 82 0 7 chr11 56378400 56378705 -92404767 + AluY SINE Alu 1 303 -8 12692 127 20 17 chr11 56378705 56380045 -92403427 - L1P3 LINE L1 -4308 2153 770 14574 107 35 1 chr11 56380150 56382331 -92401141 + L1PA8 LINE L1 2997 5252 -894 7365 72 3 2 chr11 56382332 56383237 -92400235 + L1PA8 LINE L1 5254 6159 -13 225 309 75 11 chr11 56383300 56383394 -92400078 + MIR SINE MIR 84 183 -79 401 267 62 27 chr11 56383774 56383920 -92399552 + MIR SINE MIR 33 183 -79 228 67 0 0 chr11 56383921 56383951 -92399521 + (TA)n Simple_repeat Simple_repeat 2 31 0 1643 118 5 0 chr11 56383951 56384172 -92399300 - AluSx SINE Alu -89 223 2 1971 84 4 0 chr11 56384175 56384425 -92399047 - AluY SINE Alu -10 301 51 398 169 13 0 chr11 56384527 56384604 -92398868 + L1PA16 LINE L1 6089 6166 0 4947 31 0 0 chr11 56384820 56385398 -92398074 - L1P LINE L1 -1002 5144 4567 550 287 117 13 chr11 56385406 56385723 -92397749 + L1MC4a LINE L1 5591 5940 -1868 2014 115 0 17 chr11 56385952 56386265 -92397207 + AluSx SINE Alu 1 308 0 316 288 22 36 chr11 56386268 56386407 -92397065 + L1MC/D LINE L1 1356 1492 -5038 502 277 28 20 chr11 56386415 56386633 -92396839 + L1PBa LINE L1 1484 1923 -841 252 196 101 72 chr11 56387006 56387238 -92396234 + L1MC/D LINE L1 2453 2684 -3856 5035 202 30 72 chr11 56387243 56387511 -92395961 + L1MC/D LINE L1 4519 4797 -1945 198 0 0 0 chr11 56387511 56387533 -92395939 + (CA)n Simple_repeat Simple_repeat 1 22 0 5035 202 30 72 chr11 56387533 56387923 -92395549 + L1MC/D LINE L1 4797 5202 -1540 2469 125 122 8 chr11 56387923 56388307 -92395165 - MSTA LTR MaLR 0 428 1 5035 202 30 72 chr11 56388307 56388823 -92394649 + L1MC/D LINE L1 5202 5738 -1004 2286 83 7 0 chr11 56388823 56389113 -92394359 + AluSg1 SINE Alu 1 292 -17 5035 202 30 72 chr11 56389113 56389234 -92394238 + L1MC/D LINE L1 5738 5863 -879 1436 192 66 19 chr11 56389234 56389534 -92393938 + AluJo SINE Alu 1 313 0 5035 202 30 72 chr11 56389534 56389596 -92393876 + L1MC/D LINE L1 5863 5926 -816 310 120 60 0 chr11 56389596 56389646 -92393826 + MADE1 DNA Mariner 2 54 -26 5035 202 30 72 chr11 56389646 56389831 -92393641 + L1MC/D LINE L1 5926 6059 -683 29112 43 38 2 chr11 56389960 56393567 -92389905 - L1P LINE L1 -2411 3735 1 1376 217 89 60 chr11 56393567 56393905 -92389567 - MLT2B1 LTR ERVL -56 464 108 1898 165 0 10 chr11 56393905 56394214 -92389258 - AluSx SINE Alu -6 306 1 1376 217 89 60 chr11 56394214 56394326 -92389146 - MLT2B1 LTR ERVL -412 108 1 485 263 58 6 chr11 56394979 56395150 -92388322 + MIR SINE MIR 7 186 -76 27 49 0 0 chr11 56395316 56395357 -92388115 + AT_rich Low_complexity Low_complexity 1 41 0 526 295 155 5 chr11 56395451 56395644 -92387828 + MER58A DNA MER1_type 1 222 -2 2281 106 7 0 chr11 56395816 56396117 -92387355 - AluSx SINE Alu -9 303 1 581 305 96 4 chr11 56396118 56396367 -92387105 + L2 LINE L2 3042 3313 0 266 0 29 0 chr11 56396831 56396865 -92386607 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 280 164 30 0 chr11 56398514 56398581 -92384891 + (CA)n Simple_repeat Simple_repeat 2 70 0 759 222 113 42 chr11 56398634 56398806 -92384666 - L2 LINE L2 0 3313 3112 2491 95 11 53 chr11 56398806 56399025 -92384447 - THE1B LTR MaLR 0 364 166 2213 117 0 19 chr11 56399025 56399341 -92384131 + AluSx SINE Alu 2 311 -1 2491 95 11 53 chr11 56399341 56399501 -92383971 - THE1B LTR MaLR -198 166 1 759 222 113 42 chr11 56399501 56399612 -92383860 - L2 LINE L2 -201 3112 3010 249 272 63 68 chr11 56399771 56399962 -92383510 + L2 LINE L2 466 655 -2659 296 119 0 34 chr11 56399986 56400045 -92383427 - MER5B DNA MER1_type 0 178 122 2359 96 0 0 chr11 56400047 56400340 -92383132 + AluSg SINE Alu 1 293 -17 1156 137 12 0 chr11 56400858 56401019 -92382453 + AluSx SINE Alu 1 163 -149 518 204 0 0 chr11 56401030 56401133 -92382339 + GA-rich Low_complexity Low_complexity 4 106 0 1791 178 3 0 chr11 56401317 56401610 -92381862 - AluJo SINE Alu -18 294 1 379 251 87 44 chr11 56401612 56401795 -92381677 - L2 LINE L2 -10 3303 3113 319 228 97 44 chr11 56401832 56401946 -92381526 - HAL1 LINE L1 -1575 932 813 900 285 107 37 chr11 56402038 56402497 -92380975 - HAL1 LINE L1 -1815 692 202 364 326 70 0 chr11 56402513 56402642 -92380830 - HAL1 LINE L1 -2366 141 4 507 202 0 0 chr11 56402874 56402988 -92380484 + (TTAGGG)n Simple_repeat Simple_repeat 4 117 0 264 289 88 70 chr11 56403468 56403696 -92379776 + MLT1J LTR MaLR 29 260 -251 245 275 100 0 chr11 56403726 56403806 -92379666 - L2 LINE L2 -39 3274 3187 1959 137 0 3 chr11 56404000 56404284 -92379188 - AluSq SINE Alu -30 283 1 873 277 87 75 chr11 56404292 56404358 -92379114 - ERVL LTR ERVL -1214 4550 4486 1158 174 24 14 chr11 56404358 56404571 -92378901 - MER20 DNA MER1_type -3 216 2 873 277 87 75 chr11 56404571 56405140 -92378332 - ERVL LTR ERVL -1278 4486 3908 1973 178 8 22 chr11 56405146 56405516 -92377956 - MLT1A1 LTR MaLR 0 365 1 26 0 0 0 chr11 56405546 56405572 -92377900 + AT_rich Low_complexity Low_complexity 1 26 0 317 284 45 45 chr11 56405649 56405783 -92377689 - ERVL LTR ERVL -2573 3191 3058 1446 238 153 49 chr11 56405953 56406612 -92376860 + L1MC4 LINE L1 7178 7905 -137 2216 166 19 9 chr11 56406619 56407047 -92376425 + L1MB2 LINE L1 5738 6169 -2 23 0 0 0 chr11 56407047 56407070 -92376402 + AT_rich Low_complexity Low_complexity 1 23 0 278 234 16 81 chr11 56407108 56407232 -92376240 + L1MC4 LINE L1 7898 8013 -29 899 244 7 6 chr11 56407547 56407772 -92375700 + MLT1E2 LTR MaLR 7 239 -273 446 346 26 52 chr11 56408384 56408690 -92374782 + MLT1K LTR MaLR 129 426 -162 863 142 0 15 chr11 56409223 56409357 -92374115 - FLAM_C SINE Alu 0 133 2 262 130 87 0 chr11 56409618 56409664 -92373808 - L2 LINE L2 0 3313 3264 277 280 13 0 chr11 56410021 56410096 -92373376 - MIR SINE MIR -25 237 162 2099 110 0 83 chr11 56410989 56411325 -92372147 - AluSq SINE Alu -5 308 1 2318 91 10 3 chr11 56412524 56412833 -92370639 + AluSq SINE Alu 3 313 0 708 317 57 10 chr11 56413081 56413381 -92370091 + HAL1 LINE L1 9 322 -2185 968 161 0 78 chr11 56413382 56413575 -92369897 - AluJo SINE Alu -134 178 1 2224 226 101 44 chr11 56413575 56414413 -92369059 + HAL1 LINE L1 995 1880 -627 230 0 0 32 chr11 56414900 56414931 -92368541 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 30540 117 19 57 chr11 56414934 56421328 -92362144 - L1PA3 LINE L1 0 6155 12 1962 163 18 69 chr11 56421336 56421388 -92362084 - L1MB3 LINE L1 -40 6143 6090 681 169 34 0 chr11 56421388 56421506 -92361966 + FLAM_A SINE Alu 1 122 -11 1962 163 18 69 chr11 56421506 56421792 -92361680 - L1MB3 LINE L1 -93 6090 5831 2025 129 3 26 chr11 56421792 56422103 -92361369 - AluSq SINE Alu -9 304 1 1962 163 18 69 chr11 56422103 56422211 -92361261 - L1MB3 LINE L1 -352 5831 5719 892 285 172 22 chr11 56422628 56423251 -92360221 + L2 LINE L2 2394 3161 -152 2224 122 3 3 chr11 56423251 56423563 -92359909 - AluSq SINE Alu -1 312 1 892 285 172 22 chr11 56423563 56423743 -92359729 + L2 LINE L2 3161 3313 0 910 109 8 0 chr11 56423836 56423955 -92359517 + FLAM_C SINE Alu 1 120 -23 27 0 0 0 chr11 56424312 56424339 -92359133 + AT_rich Low_complexity Low_complexity 1 27 0 785 152 0 43 chr11 56424528 56424666 -92358806 - FLAM_C SINE Alu 0 133 2 2280 103 10 0 chr11 56424810 56425111 -92358361 - AluSx SINE Alu -8 304 1 7246 50 3 1 chr11 56425233 56426300 -92357172 + L1PA7 LINE L1 5083 6151 -3 340 121 0 35 chr11 56426329 56426387 -92357085 + L1PB3 LINE L1 6097 6152 -2 2107 115 34 3 chr11 56426409 56426704 -92356768 + AluSg SINE Alu 1 304 -6 461 253 0 0 chr11 56426705 56426800 -92356672 + AluJo SINE Alu 126 220 -92 1806 163 10 7 chr11 56427133 56427428 -92356044 + AluSq SINE Alu 3 298 -15 724 175 0 0 chr11 56428258 56428378 -92355094 + FLAM_C SINE Alu 1 120 -13 369 278 96 0 chr11 56428943 56429058 -92354414 - LTR37B LTR ERV1 -342 126 1 10392 52 11 85 chr11 56429175 56430664 -92352808 + SVA Other Other 7 1386 0 269 309 0 0 chr11 56433498 56433582 -92349890 - MIR SINE MIR -91 171 88 527 289 123 17 chr11 56434095 56434330 -92349142 - MIR SINE MIR -2 260 1 394 226 22 80 chr11 56434460 56434506 -92348966 - MLT1H LTR MaLR -4 545 498 593 212 8 15 chr11 56434506 56434638 -92348834 - L1PB4 LINE L1 -1 6155 6025 394 226 22 80 chr11 56434638 56434728 -92348744 - MLT1H LTR MaLR -51 498 417 515 156 0 0 chr11 56434974 56435064 -92348408 + L1MA7 LINE L1 6200 6289 -2 973 253 108 12 chr11 56435077 56435504 -92347968 + L1ME3 LINE L1 4190 4657 -1489 398 221 68 47 chr11 56435491 56435658 -92347814 + L1ME3 LINE L1 5129 5302 -844 * 2537 87 0 0 chr11 56435658 56435970 -92347502 + AluSx SINE Alu 1 312 0 398 221 68 47 chr11 56435970 56435992 -92347480 + L1ME3 LINE L1 5302 5322 -824 304 290 21 75 chr11 56436005 56436191 -92347281 + LTR16C LTR ERVL 316 491 0 1044 197 38 130 chr11 56436749 56436854 -92346618 + L1ME3 LINE L1 5289 5402 -760 3697 121 11 9 chr11 56436854 56437409 -92346063 + L1PA14 LINE L1 5603 6158 -3 1044 197 38 130 chr11 56437409 56437590 -92345882 + L1ME3 LINE L1 5402 5598 -564 2065 136 14 0 chr11 56437590 56437885 -92345587 + AluSx SINE Alu 3 301 -11 1044 197 38 130 chr11 56437885 56438239 -92345233 + L1ME3 LINE L1 5598 5844 -318 342 286 14 84 chr11 56440398 56440600 -92342872 + MIR SINE MIR 20 205 -57 723 233 78 22 chr11 56441302 56441534 -92341938 - MIR SINE MIR 0 262 18 291 242 204 38 chr11 56442343 56442443 -92341029 - MER5A DNA MER1_type -8 181 53 2584 61 0 6 chr11 56442443 56442756 -92340716 - AluY SINE Alu 0 311 1 291 242 204 38 chr11 56442756 56442787 -92340685 - MER5A DNA MER1_type -136 53 28 432 178 0 44 chr11 56442802 56442892 -92340580 + L1MC4a LINE L1 5839 5924 -1884 2907 184 15 12 chr11 56443611 56444148 -92339324 + MER44D DNA MER2_type 12 602 -3 2768 141 14 7 chr11 56444185 56444610 -92338862 - MSTC LTR MaLR 0 428 1 193 294 0 0 chr11 56444813 56444864 -92338608 + L2 LINE L2 3210 3260 -12 1795 141 28 11 chr11 56445440 56445724 -92337748 + AluSx SINE Alu 1 289 -23 2721 134 34 5 chr11 56445792 56446238 -92337234 + L1PA16 LINE L1 5699 6157 -9 337 291 104 53 chr11 56446286 56447244 -92336228 + L1ME3A LINE L1 2292 3298 -2848 367 284 99 27 chr11 56447788 56447904 -92335568 + L1ME3A LINE L1 5510 5616 -554 1033 167 44 0 chr11 56447904 56448084 -92335388 - MER5A DNA MER1_type 0 189 2 367 284 99 27 chr11 56448084 56448292 -92335180 + L1ME3A LINE L1 5616 5866 -304 226 159 23 0 chr11 56448509 56448553 -92334919 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 33 0 0 0 chr11 56449460 56449493 -92333979 + AT_rich Low_complexity Low_complexity 1 33 0 2491 114 23 106 chr11 56449772 56450245 -92333227 + MER57B LTR ERV1 1 434 0 196 303 192 0 chr11 56450690 56450789 -92332683 + L2 LINE L2 3144 3261 -11 2201 106 9 37 chr11 56451610 56451931 -92331541 - AluSx SINE Alu 0 312 1 202 309 29 0 chr11 56451974 56452042 -92331430 - MIR SINE MIR -120 142 73 280 175 0 18 chr11 56452692 56452749 -92330723 + MIR SINE MIR 28 83 -179 624 284 162 9 chr11 56453180 56453293 -92330179 - L2 LINE L2 -1 3312 3218 231 36 0 0 chr11 56453293 56453321 -92330151 + (TG)n Simple_repeat Simple_repeat 1 28 0 624 284 162 9 chr11 56453321 56453541 -92329931 - L2 LINE L2 -95 3218 2928 322 316 29 7 chr11 56453588 56453727 -92329745 - MIR SINE MIR -104 158 17 2115 70 3 89 chr11 56454759 56455074 -92328398 - AluSc SINE Alu -21 288 1 247 277 24 36 chr11 56455295 56455378 -92328094 - MIR SINE MIR -179 83 2 233 120 120 0 chr11 56455911 56455961 -92327511 - L1PA16 LINE L1 0 6166 6111 2281 126 0 0 chr11 56455975 56456284 -92327188 + AluSx SINE Alu 1 309 -3 741 126 0 0 chr11 56456285 56456388 -92327084 - U6 snRNA snRNA -4 103 1 2515 43 0 0 chr11 56456752 56457032 -92326440 - AluY SINE Alu -31 280 1 29 28 0 0 chr11 56457320 56457356 -92326116 + AT_rich Low_complexity Low_complexity 1 36 0 2276 81 0 48 chr11 56457364 56457674 -92325798 + AluSx SINE Alu 1 295 -17 634 171 45 0 chr11 56457677 56457788 -92325684 - FLAM_A SINE Alu -17 116 1 229 364 0 8 chr11 56457882 56458000 -92325472 + CT-rich Low_complexity Low_complexity 3 119 0 2434 82 0 13 chr11 56458383 56458698 -92324774 + AluSx SINE Alu 1 311 -1 2396 100 0 0 chr11 56458712 56459021 -92324451 + AluSc SINE Alu 1 309 0 646 241 147 35 chr11 56459532 56459880 -92323592 - L2 LINE L2 -5 3308 2922 1631 157 56 36 chr11 56460265 56460571 -92322901 - AluJb SINE Alu 0 312 1 469 143 9 9 chr11 56461122 56461227 -92322245 + CT-rich Low_complexity Low_complexity 2 106 0 1475 185 108 0 chr11 56461512 56461772 -92321700 - AluJo SINE Alu -24 288 1 1260 98 29 6 chr11 56461792 56461966 -92321506 - AluSp SINE Alu -15 298 121 28 0 0 0 chr11 56461966 56461994 -92321478 + AT_rich Low_complexity Low_complexity 1 28 0 1964 137 17 17 chr11 56461994 56462287 -92321185 + AluSx SINE Alu 1 293 -19 2169 113 3 0 chr11 56463031 56463352 -92320120 - AluSx SINE Alu 0 322 1 22 0 0 0 chr11 56463360 56463382 -92320090 + AT_rich Low_complexity Low_complexity 1 22 0 225 224 61 0 chr11 56463431 56463480 -92319992 + MER5A DNA MER1_type 136 187 -2 721 169 48 0 chr11 56463561 56463685 -92319787 + FLAM_A SINE Alu 1 130 -3 189 0 0 0 chr11 56463687 56463708 -92319764 + (CA)n Simple_repeat Simple_repeat 2 22 0 1906 121 0 4 chr11 56465643 56465908 -92317564 - AluSx SINE Alu -48 264 1 2003 145 0 3 chr11 56468395 56468692 -92314780 - AluJo SINE Alu -16 296 1 197 266 110 37 chr11 56468797 56468906 -92314566 + MIR SINE MIR 75 191 -71 2325 105 7 0 chr11 56469270 56469574 -92313898 - AluSq SINE Alu -7 306 1 2075 146 77 16 chr11 56470703 56471081 -92312391 - MER57A LTR ERV1 -2 401 1 2168 125 20 0 chr11 56471341 56471644 -92311828 + AluSx SINE Alu 1 309 -3 2510 35 0 0 chr11 56471728 56472010 -92311462 + AluY SINE Alu 14 295 -16 1771 157 21 11 chr11 56472249 56472559 -92310913 - AluJb SINE Alu 0 313 1 945 183 0 6 chr11 56472600 56472764 -92310708 + AluJb SINE Alu 137 299 -13 2041 148 0 7 chr11 56472839 56473142 -92310330 - AluSx SINE Alu -11 301 1 293 323 20 10 chr11 56473323 56473422 -92310050 - MIR SINE MIR -80 128 29 678 263 82 4 chr11 56473563 56473795 -92309677 - MIR SINE MIR 0 262 13 2216 83 4 0 chr11 56473907 56474183 -92309289 - AluSg SINE Alu -33 277 1 2226 109 0 0 chr11 56474588 56474891 -92308581 + AluY SINE Alu 1 303 -8 312 257 218 22 chr11 56475289 56475468 -92308004 + MIR SINE MIR 1 214 -48 185 186 47 0 chr11 56475816 56475859 -92307613 - MIR SINE MIR -59 203 159 1424 96 73 18 chr11 56477906 56478124 -92305348 + MER30 DNA MER1_type 1 230 0 1713 132 44 22 chr11 56478428 56478700 -92304772 - AluSx SINE Alu -24 288 11 1111 97 97 0 chr11 56478708 56478873 -92304599 - AluSg/x SINE Alu -2 310 130 198 0 0 0 chr11 56478886 56478908 -92304564 + (T)n Simple_repeat Simple_repeat 1 22 0 2253 95 7 10 chr11 56479090 56479395 -92304077 - AluY SINE Alu -7 304 1 235 250 0 0 chr11 56480954 56481002 -92302470 + (TG)n Simple_repeat Simple_repeat 1 48 0 25 0 0 0 chr11 56481092 56481117 -92302355 + AT_rich Low_complexity Low_complexity 1 25 0 2016 85 8 0 chr11 56481117 56481365 -92302107 - AluSc SINE Alu -59 250 1 22 0 0 0 chr11 56481370 56481392 -92302080 + AT_rich Low_complexity Low_complexity 1 22 0 424 239 35 9 chr11 56482208 56482321 -92301151 - L2 LINE L2 -5 3308 3193 2388 91 3 0 chr11 56483042 56483339 -92300133 + AluSp SINE Alu 1 298 -15 284 164 18 18 chr11 56483352 56483407 -92300065 + Alu SINE Alu 1 55 -245 1870 152 17 3 chr11 56483455 56483744 -92299728 + AluJo SINE Alu 1 293 -19 1900 125 3 26 chr11 56484644 56484948 -92298524 + AluSg SINE Alu 1 297 -13 442 254 82 0 chr11 56485156 56485266 -92298206 + L2 LINE L2 3149 3267 -5 1913 151 7 3 chr11 56485563 56485862 -92297610 - AluJo SINE Alu -8 304 5 231 361 39 17 chr11 56485977 56486157 -92297315 + L2 LINE L2 2724 2907 -407 300 268 49 0 chr11 56486623 56486705 -92296767 + MIR SINE MIR 104 189 -73 586 96 48 10 chr11 56486832 56486936 -92296536 + AluSp SINE Alu 2 109 -204 26 0 0 0 chr11 56487185 56487211 -92296261 + AT_rich Low_complexity Low_complexity 1 26 0 968 85 0 0 chr11 56487213 56487331 -92296141 + AluJb SINE Alu 1 118 -194 30 83 0 0 chr11 56487331 56487403 -92296069 + AT_rich Low_complexity Low_complexity 1 72 0 2212 109 0 10 chr11 56487662 56487973 -92295499 + AluSx SINE Alu 1 308 -4 2048 118 0 14 chr11 56488202 56488514 -92294958 - AluSq SINE Alu 0 308 1 2056 90 0 19 chr11 56488923 56489229 -92294243 - AluSc SINE Alu 0 318 18 2417 76 0 10 chr11 56489673 56489975 -92293497 + AluSc SINE Alu 1 299 -10 2284 92 3 0 chr11 56490391 56490684 -92292788 - AluSx SINE Alu -18 294 1 635 214 148 6 chr11 56490784 56490966 -92292506 + MIR SINE MIR 27 234 -28 216 224 86 0 chr11 56491648 56491706 -92291766 - L2 LINE L2 -673 2641 2579 191 176 203 0 chr11 56491760 56491834 -92291638 - MIR SINE MIR -16 246 158 1877 138 8 4 chr11 56491901 56492169 -92291303 - AluSx SINE Alu -43 269 1 182 191 143 0 chr11 56492227 56492269 -92291203 - MIR SINE MIR -150 112 65 1271 177 0 5 chr11 56492424 56492639 -92290833 + AluY SINE Alu 87 300 -11 434 311 88 36 chr11 56492670 56492976 -92290496 - L2 LINE L2 -897 2417 2096 2122 118 44 0 chr11 56493039 56493336 -92290136 - AluSx SINE Alu -2 310 1 2066 108 59 0 chr11 56494542 56494828 -92288644 - AluSx SINE Alu -9 303 1 5298 119 116 71 chr11 56495745 56496366 -92287106 - Tigger3b DNA MER2_type -1799 1229 637 1456 158 49 8 chr11 56496366 56496613 -92286859 + AluJo SINE Alu 26 282 -30 5298 119 116 71 chr11 56496613 56496839 -92286633 - Tigger3b DNA MER2_type -2391 637 423 1775 135 3 36 chr11 56496839 56497143 -92286329 - AluJo SINE Alu -17 295 2 5298 119 116 71 chr11 56497143 56497387 -92286085 - Tigger3b DNA MER2_type -2605 423 88 278 279 89 25 chr11 56497512 56497670 -92285802 - L2 LINE L2 -189 3083 2916 1915 217 159 17 chr11 56497702 56498408 -92285064 + L1MC5 LINE L1 7105 7910 -51 1927 140 0 0 chr11 56499585 56499857 -92283615 + AluJo SINE Alu 21 292 -20 1952 138 21 14 chr11 56500922 56501224 -92282248 + AluSx SINE Alu 1 304 0 1416 149 18 9 chr11 56501334 56501555 -92281917 + AluJb SINE Alu 1 223 -89 904 242 102 20 chr11 56501712 56502112 -92281360 - L1ME4a LINE L1 -173 5989 5558 * 2827 150 91 61 chr11 56502111 56502395 -92281077 - L1MC2 LINE L1 -433 5911 5637 2461 125 120 5 chr11 56502395 56502779 -92280693 + MSTA LTR MaLR 1 428 0 2827 150 91 61 chr11 56502779 56503149 -92280323 - L1MC2 LINE L1 -707 5637 5240 2265 103 7 0 chr11 56503156 56503458 -92280014 - AluSx SINE Alu -8 304 1 598 151 226 0 chr11 56503459 56503565 -92279907 - AluJo SINE Alu -25 287 158 590 165 0 0 chr11 56503564 56503649 -92279823 - AluJo SINE Alu -204 108 24 * 923 98 0 0 chr11 56503649 56503771 -92279701 - L1P4 LINE L1 -435 5730 5606 221 56 0 28 chr11 56503771 56503807 -92279665 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 3548 43 32 0 chr11 56503807 56504240 -92279232 - L1PA4 LINE L1 -24 6131 5684 3050 136 0 2 chr11 56504240 56504654 -92278818 + L1PA15 LINE L1 5734 6165 0 184 0 62 31 chr11 56504690 56504722 -92278750 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 227 189 0 0 chr11 56504722 56504759 -92278713 - AluJo SINE Alu -262 37 1 323 161 0 0 chr11 56504761 56504817 -92278655 - L1MC2 LINE L1 -900 5246 5191 209 135 0 27 chr11 56504982 56505019 -92278453 + (TA)n Simple_repeat Simple_repeat 2 37 0 265 291 109 50 chr11 56505020 56505240 -92278232 + L1MC/D LINE L1 5322 5554 -2254 1769 157 3 32 chr11 56505278 56505591 -92277881 - AluJb SINE Alu -8 304 1 2333 113 3 0 chr11 56505668 56505979 -92277493 + AluSx SINE Alu 1 312 0 426 269 15 15 chr11 56505994 56506124 -92277348 + MIR SINE MIR 116 245 -17 219 257 0 0 chr11 56506361 56506435 -92277037 + CT-rich Low_complexity Low_complexity 1 74 0 360 303 198 13 chr11 56506435 56506673 -92276799 - L1MC4a LINE L1 -1862 5946 5665 1926 107 0 83 chr11 56507039 56507365 -92276107 + AluSx SINE Alu 1 299 -13 726 140 72 18 chr11 56507604 56507769 -92275703 - MER31B LTR ERV1 -9 652 285 5197 210 63 43 chr11 56507780 56509473 -92273999 + L1MB8 LINE L1 610 2268 -4689 722 195 31 0 chr11 56509473 56509601 -92273871 + FLAM_A SINE Alu 1 132 -1 5197 210 63 43 chr11 56509601 56509674 -92273798 + L1MB8 LINE L1 2268 2338 -4619 1962 152 13 13 chr11 56509674 56509984 -92273488 + AluJo SINE Alu 1 310 -2 5197 210 63 43 chr11 56509984 56510523 -92272949 + L1MB8 LINE L1 2338 2865 -4092 264 30 0 0 chr11 56510523 56510556 -92272916 + (CAA)n Simple_repeat Simple_repeat 1 33 0 5197 210 63 43 chr11 56510556 56510762 -92272710 + L1MB8 LINE L1 2865 3065 -3892 1679 184 0 14 chr11 56510762 56511050 -92272422 + AluJb SINE Alu 1 284 -28 5197 210 63 43 chr11 56511050 56511190 -92272282 + L1MB8 LINE L1 3065 3201 -3756 1913 128 43 0 chr11 56511190 56511472 -92272000 - AluSx SINE Alu -18 294 1 5197 210 63 43 chr11 56511472 56511681 -92271791 + L1MB8 LINE L1 3201 4847 -2110 1597 107 8 37 chr11 56511684 56511927 -92271545 - AluSx SINE Alu -76 236 1 2600 206 21 38 chr11 56511928 56512248 -92271224 + L1MB8 LINE L1 5351 5675 -1282 2176 138 0 0 chr11 56512248 56512559 -92270913 - AluSx SINE Alu -1 311 1 2600 206 21 38 chr11 56512559 56512830 -92270642 + L1MB8 LINE L1 5675 5933 -1024 1897 175 29 50 chr11 56512830 56513212 -92270260 - MLT1A2 LTR MaLR 0 374 1 2600 206 21 38 chr11 56513212 56513251 -92270221 + L1MB8 LINE L1 5933 5971 -986 40221 72 8 6 chr11 56513266 56519398 -92264074 + L1PA6 LINE L1 11 6152 -2 4673 176 16 29 chr11 56519419 56520368 -92263104 + L1MB8 LINE L1 5984 6921 -68 2013 92 4 0 chr11 56520368 56520629 -92262843 - AluSq SINE Alu -9 304 43 4673 176 16 29 chr11 56520629 56520697 -92262775 + L1MB8 LINE L1 6921 6988 -1 23 33 0 0 chr11 56520697 56520727 -92262745 + AT_rich Low_complexity Low_complexity 1 30 0 1225 296 110 11 chr11 56520785 56521247 -92262225 + Tigger8 DNA MER2_type 26 533 -133 2365 84 0 13 chr11 56521763 56522072 -92261400 - AluSc SINE Alu -4 305 1 2016 94 0 19 chr11 56522516 56522818 -92260654 + AluSc SINE Alu 18 314 0 2027 118 0 14 chr11 56523227 56523539 -92259933 + AluSq SINE Alu 1 308 0 2207 106 0 10 chr11 56523768 56524079 -92259393 - AluSx SINE Alu -4 308 1 30 83 0 0 chr11 56524339 56524411 -92259061 + AT_rich Low_complexity Low_complexity 1 72 0 957 85 0 0 chr11 56524411 56524529 -92258943 - AluJb SINE Alu -194 118 1 26 0 0 0 chr11 56524531 56524557 -92258915 + AT_rich Low_complexity Low_complexity 1 26 0 403 296 0 0 chr11 56524706 56524804 -92258668 - MER5A DNA MER1_type -83 106 9 861 262 52 52 chr11 56524942 56525127 -92258345 - L1ME3A LINE L1 -208 5962 5778 2345 86 3 7 chr11 56525127 56525430 -92258042 - AluSq SINE Alu -11 302 1 861 262 52 52 chr11 56525430 56525667 -92257805 - L1ME3A LINE L1 -391 5779 5540 4107 91 18 2 chr11 56525740 56526298 -92257174 + L1MA5A LINE L1 5727 6293 -4 210 241 19 0 chr11 56526680 56526734 -92256738 + L2 LINE L2 2918 2972 -300 209 309 36 0 chr11 56526728 56526783 -92256689 + L2 LINE L2 3141 3197 -75 * 589 227 104 7 chr11 56526813 56526873 -92256599 - MER5A DNA MER1_type 0 189 136 2235 90 0 32 chr11 56526873 56527183 -92256289 - AluSx SINE Alu -12 300 1 589 227 104 7 chr11 56527183 56527276 -92256196 - MER5A DNA MER1_type -53 136 21 419 296 0 0 chr11 56527300 56527388 -92256084 - L2 LINE L2 0 3313 3226 566 299 143 33 chr11 56528002 56528393 -92255079 + MLT1J2 LTR MaLR 15 448 -2 185 65 32 0 chr11 56528677 56528708 -92254764 + (TAGG)n Simple_repeat Simple_repeat 4 35 0 3680 149 19 77 chr11 56528708 56528855 -92254617 + MER50 LTR ERV1 24 178 -556 2074 135 0 0 chr11 56528855 56529159 -92254313 + AluSx SINE Alu 1 304 0 3680 149 19 77 chr11 56529159 56529296 -92254176 + MER50 LTR ERV1 178 321 -413 2513 66 0 0 chr11 56529296 56529601 -92253871 - AluY SINE Alu -6 305 1 3680 149 19 77 chr11 56529601 56530044 -92253428 + MER50 LTR ERV1 321 711 -23 2210 100 4 0 chr11 56530078 56530379 -92253093 + AluSq SINE Alu 1 302 0 326 277 79 35 chr11 56530528 56530730 -92252742 - L1ME4a LINE L1 -267 5854 5644 245 342 40 27 chr11 56531371 56531520 -92251952 + MIR SINE MIR 47 197 -65 2263 159 68 5 chr11 56532738 56533135 -92250337 - MSTB LTR MaLR -4 422 1 9336 166 40 19 chr11 56533135 56534401 -92249071 - MSTB-int LTR MaLR 0 1651 343 1953 151 3 3 chr11 56534401 56534699 -92248773 - AluJo SINE Alu -14 298 1 9336 166 40 19 chr11 56534699 56535050 -92248422 - MSTB-int LTR MaLR -1308 343 1 2765 142 26 5 chr11 56535050 56535465 -92248007 - MSTB LTR MaLR -2 424 1 1037 268 12 56 chr11 56536047 56536162 -92247310 - Charlie2 DNA MER1_type -2452 330 211 2341 108 0 6 chr11 56536162 56536476 -92246996 + AluSx SINE Alu 1 312 0 1037 268 12 56 chr11 56536476 56536700 -92246772 - Charlie2 DNA MER1_type -2571 211 6 2256 103 7 0 chr11 56537189 56537479 -92245993 - AluSx SINE Alu -20 292 1 244 105 0 0 chr11 56538562 56538600 -92244872 + MIR SINE MIR 90 127 -135 767 165 8 24 chr11 56539373 56539500 -92243972 - FLAM_C SINE Alu -8 125 1 180 111 0 0 chr11 56539769 56539796 -92243676 + (CTAGGG)n Simple_repeat Simple_repeat 4 30 0 23 33 0 0 chr11 56539997 56540027 -92243445 + AT_rich Low_complexity Low_complexity 1 30 0 2203 107 3 25 chr11 56540030 56540348 -92243124 + AluSp SINE Alu 2 312 -1 234 0 0 0 chr11 56540783 56540809 -92242663 + (A)n Simple_repeat Simple_repeat 1 26 0 534 219 62 39 chr11 56540843 56541021 -92242451 + L1MC5 LINE L1 7744 7925 -36 1964 153 0 7 chr11 56541119 56541426 -92242046 + AluSx SINE Alu 1 305 -7 245 171 0 0 chr11 56541464 56541499 -92241973 - Alu SINE Alu -267 36 2 379 327 26 9 chr11 56541505 56541618 -92241854 - MIR SINE MIR -63 145 31 787 167 0 24 chr11 56541868 56541994 -92241478 - FLAM_A SINE Alu -10 123 1 2061 138 3 0 chr11 56542005 56542295 -92241177 - AluSx SINE Alu -19 293 3 2233 125 0 0 chr11 56542306 56542601 -92240871 - AluSx SINE Alu -17 295 1 700 202 51 119 chr11 56542762 56543074 -92240398 - LTR37B LTR ERV1 -177 291 1 522 176 155 42 chr11 56543112 56543305 -92240167 - MIR SINE MIR 0 262 48 807 154 0 0 chr11 56543396 56543513 -92239959 - FLAM_C SINE Alu -25 118 2 1260 0 481 0 chr11 56543605 56543690 -92239782 + L1MB4 LINE L1 5840 5854 -324 2332 129 117 8 chr11 56543690 56543866 -92239606 + MSTA LTR MaLR 1 156 -272 2278 101 17 0 chr11 56543866 56544164 -92239308 + AluSx SINE Alu 1 303 -9 2332 129 117 8 chr11 56544164 56544373 -92239099 + MSTA LTR MaLR 156 428 0 1260 0 481 0 chr11 56544373 56544595 -92238877 + L1MB4 LINE L1 5854 6157 -21 191 324 108 0 chr11 56544629 56544731 -92238741 + MIR SINE MIR 137 249 -13 2220 107 10 0 chr11 56544903 56545201 -92238271 - AluSx SINE Alu -10 302 2 232 236 56 0 chr11 56546014 56546086 -92237386 - MLT1L LTR MaLR -22 593 518 235 275 29 0 chr11 56546142 56546211 -92237261 - MLT1J LTR MaLR -331 180 110 1979 135 6 26 chr11 56546437 56546749 -92236723 + AluSx SINE Alu 1 306 -6 250 345 151 0 chr11 56546855 56546974 -92236498 - L2 LINE L2 0 3313 3177 1856 159 0 7 chr11 56548242 56548531 -92234941 - AluJb SINE Alu -15 297 11 2468 71 3 0 chr11 56548615 56548910 -92234562 + AluY SINE Alu 1 296 -15 2036 106 44 75 chr11 56549623 56549782 -92233690 + THE1C LTR MaLR 1 163 -212 1882 144 47 0 chr11 56549782 56550060 -92233412 - AluSx SINE Alu -21 291 1 2036 106 44 75 chr11 56550060 56550287 -92233185 + THE1C LTR MaLR 163 375 0 532 290 18 43 chr11 56550353 56550585 -92232887 + MIR SINE MIR 34 258 -4 224 171 23 163 chr11 56551635 56551676 -92231796 + L2 LINE L2 3203 3248 -65 2268 129 0 0 chr11 56551676 56551986 -92231486 - AluSx SINE Alu -2 310 1 224 171 23 163 chr11 56551986 56552073 -92231399 + L2 LINE L2 3248 3313 0 2205 116 3 0 chr11 56552333 56552625 -92230847 + AluSq SINE Alu 1 293 -20 334 371 18 12 chr11 56552700 56552870 -92230602 - L3 LINE CR1 -1 1576 1406 1952 134 22 0 chr11 56553040 56553213 -92230259 - AluSx SINE Alu 0 304 121 225 0 0 0 chr11 56553213 56553238 -92230234 + (TA)n Simple_repeat Simple_repeat 2 26 0 1952 134 22 0 chr11 56553238 56553361 -92230111 - AluSx SINE Alu -183 121 2 205 336 35 0 chr11 56553575 56553688 -92229784 - MIR3 SINE MIR -18 190 74 233 232 116 0 chr11 56554245 56554340 -92229132 + L2 LINE L2 3208 3313 0 2093 120 17 3 chr11 56554440 56554731 -92228741 + AluSg SINE Alu 1 295 -15 1774 150 0 67 chr11 56554892 56555206 -92228266 + AluJb SINE Alu 1 293 -19 2453 149 95 2 chr11 56555206 56555669 -92227803 - L1MA6 LINE L1 -12 6288 5783 338 264 23 0 chr11 56555675 56555762 -92227710 + L1MC4 LINE L1 6614 6702 -1340 241 200 0 0 chr11 56555785 56555840 -92227632 + L1MC4 LINE L1 6652 6706 -1336 * 12800 150 36 41 chr11 56555830 56556320 -92227152 - L1M2 LINE L1 -511 5789 5298 225 0 0 0 chr11 56556320 56556345 -92227127 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 12800 150 36 41 chr11 56556345 56557028 -92226444 - L1M2 LINE L1 -1002 5298 4613 1847 150 0 29 chr11 56557028 56557308 -92226164 + AluSx SINE Alu 1 272 -40 12800 150 36 41 chr11 56557308 56558614 -92224858 - L1M2 LINE L1 -1687 4613 3337 2174 122 54 25 chr11 56558614 56558968 -92224504 + THE1B LTR MaLR 1 364 0 12800 150 36 41 chr11 56558968 56559546 -92223926 - L1M2 LINE L1 -2963 3337 2758 1828 178 0 20 chr11 56559546 56559679 -92223793 - AluJb SINE Alu -15 297 163 1584 142 206 14 chr11 56559679 56560038 -92223434 - MSTA LTR MaLR 0 428 1 1828 178 0 20 chr11 56560038 56560207 -92223265 - AluJb SINE Alu -149 163 1 2458 198 12 4 chr11 56560207 56560703 -92222769 - L1M2 LINE L1 -3384 2762 2263 1976 156 0 28 chr11 56560708 56561029 -92222443 - AluSx SINE Alu 0 312 1 2085 135 10 0 chr11 56561044 56561347 -92222125 - AluSx SINE Alu -6 306 1 198 0 0 0 chr11 56561376 56561398 -92222074 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 2551 200 85 25 chr11 56561494 56561639 -92221833 + MLT1F1 LTR MaLR 5 140 -427 2630 155 24 28 chr11 56561639 56562104 -92221368 - MLT1C LTR MaLR 0 467 5 2551 200 85 25 chr11 56562104 56562489 -92220983 + MLT1F1 LTR MaLR 140 567 0 641 224 119 19 chr11 56562740 56562950 -92220522 - MER69 DNA AcHobo 0 2526 2296 * 1579 252 94 35 chr11 56562943 56563214 -92220258 - MER69 DNA AcHobo -1950 576 322 1621 140 4 0 chr11 56563214 56563457 -92220015 - AluSx SINE Alu -15 297 54 1579 252 94 35 chr11 56563457 56563728 -92219744 - MER69 DNA AcHobo -2204 322 2 1868 130 75 39 chr11 56563855 56564217 -92219255 + THE1C LTR MaLR 1 375 0 233 336 29 27 chr11 56564353 56564592 -92218880 - L2 LINE L2 -292 2980 2742 237 304 51 64 chr11 56564636 56564949 -92218523 + L1MEd LINE L1 11 319 -5800 195 204 0 56 chr11 56565116 56565170 -92218302 - L2 LINE L2 -8 3264 3214 1640 154 6 49 chr11 56565319 56565643 -92217829 + AluJb SINE Alu 1 310 -2 1481 141 49 58 chr11 56566304 56566631 -92216841 + MER33 DNA MER1_type 1 324 0 1084 158 27 0 chr11 56566925 56567109 -92216363 + MER20 DNA MER1_type 31 219 0 189 217 0 43 chr11 56568300 56568346 -92215126 - L2 LINE L2 -19 3253 3210 3703 157 36 66 chr11 56568360 56569144 -92214328 - MER4D LTR ERV1 -143 760 1 1761 170 24 0 chr11 56569827 56570115 -92213357 + AluJb SINE Alu 1 295 -17 1802 84 12 12 chr11 56570160 56570410 -92213062 - MER41A LTR ERV1 0 554 305 5771 111 46 42 chr11 56570430 56571801 -92211671 - MER41A-int LTR ERV1 -1736 3834 2184 291 130 19 19 chr11 56571797 56571851 -92211621 - MER41A-int LTR ERV1 -3726 2220 2167 * 4299 144 74 20 chr11 56571847 56572316 -92211156 - MER41A-int LTR ERV1 -3929 2017 1575 2092 137 3 0 chr11 56572316 56572609 -92210863 + AluSx SINE Alu 5 298 -14 4299 144 74 20 chr11 56572609 56573679 -92209793 - MER41A-int LTR ERV1 -4371 1575 205 8992 87 11 0 chr11 56573683 56575684 -92207788 - L1PA7 LINE L1 0 6469 4451 4338 117 7 0 chr11 56575686 56576283 -92207189 - L1PA7 LINE L1 -5860 601 1 1398 89 64 0 chr11 56576285 56576487 -92206985 - MER41A-int LTR ERV1 -7541 215 1 4116 102 0 4 chr11 56576572 56577128 -92206344 - MER41A LTR ERV1 0 554 1 1601 108 0 150 chr11 56577444 56577804 -92205668 + MLT1A1 LTR MaLR 1 306 -59 1210 113 0 0 chr11 56577804 56577963 -92205509 + AluSq SINE Alu 1 159 -154 277 179 134 0 chr11 56577992 56578059 -92205413 + MLT1A1 LTR MaLR 290 365 0 5261 86 0 24 chr11 56578110 56578668 -92204804 - LTR8 LTR ERV1 0 691 152 2026 134 3 13 chr11 56578668 56578973 -92204499 + AluSx SINE Alu 1 302 -10 5261 86 0 24 chr11 56578973 56579122 -92204350 - LTR8 LTR ERV1 -539 152 1 619 260 115 48 chr11 56579222 56579406 -92204066 + MLT1J LTR MaLR 3 218 -293 1448 190 74 68 chr11 56579406 56579800 -92203672 - MSTD LTR MaLR 0 396 1 619 260 115 48 chr11 56579800 56579927 -92203545 + MLT1J LTR MaLR 218 335 -176 1980 170 7 58 chr11 56579928 56580339 -92203133 - MLT1B LTR MaLR 0 390 1 206 263 10 71 chr11 56580509 56580608 -92202864 + MIR SINE MIR 124 216 -46 538 204 172 23 chr11 56580741 56580962 -92202510 + MER113 DNA MER1_type? 185 438 -83 2136 113 0 3 chr11 56580967 56581280 -92202192 - AluSx SINE Alu 0 312 1 1989 185 9 3 chr11 56581281 56581616 -92201856 + THE1B LTR MaLR 28 364 0 219 340 93 6 chr11 56581701 56581863 -92201609 - MIR SINE MIR -6 256 81 1770 155 72 25 chr11 56581941 56582307 -92201165 + LTR22B LTR ERVK 1 460 -120 730 211 196 5 chr11 56582408 56582602 -92200870 + MIR SINE MIR 2 232 -30 2265 112 3 3 chr11 56583946 56584258 -92199214 + AluSx SINE Alu 1 312 0 1421 225 60 58 chr11 56584521 56584703 -92198769 + MLT1C LTR MaLR 1 181 -286 2112 123 10 0 chr11 56584703 56584995 -92198477 + AluSx SINE Alu 1 295 -17 1421 225 60 58 chr11 56584995 56585278 -92198194 + MLT1C LTR MaLR 181 467 0 5223 215 79 73 chr11 56585430 56586928 -92196544 + L1 LINE L1 8 1513 -5336 * 6867 142 11 1 chr11 56586924 56588052 -92195420 + L1 LINE L1 4519 5657 -1191 4723 145 136 141 chr11 56588049 56588310 -92195162 + L1MA4A LINE L1 2991 3252 -2894 * 1654 52 0 9 chr11 56588310 56588520 -92194952 + L1PA5 LINE L1 5947 6154 0 4723 145 136 141 chr11 56588520 56588827 -92194645 + L1MA4A LINE L1 3252 3559 -2587 1503 194 10 20 chr11 56588827 56589126 -92194346 + AluJb SINE Alu 1 296 -16 4723 145 136 141 chr11 56589126 56589329 -92194143 + L1MA4A LINE L1 3559 3761 -2385 2016 117 29 0 chr11 56589329 56589627 -92193845 - AluSg SINE Alu 0 308 3 4723 145 136 141 chr11 56589627 56589681 -92193791 + L1MA4A LINE L1 3761 3814 -2332 728 161 0 8 chr11 56589681 56589799 -92193673 - FLAM_C SINE Alu -25 118 2 4723 145 136 141 chr11 56589799 56590278 -92193194 + L1MA4A LINE L1 3814 4409 -1737 1559 180 8 4 chr11 56590278 56590533 -92192939 + AluJo SINE Alu 1 256 -56 4723 145 136 141 chr11 56590533 56590873 -92192599 + L1MA4A LINE L1 4409 4749 -1397 4437 70 34 26 chr11 56590878 56591118 -92192354 - L1PB1 LINE L1 -130 6021 5784 360 0 0 0 chr11 56591118 56591158 -92192314 + (TG)n Simple_repeat Simple_repeat 2 41 0 4437 70 34 26 chr11 56591158 56591543 -92191929 - L1PB1 LINE L1 -367 5784 5391 * 5102 130 42 30 chr11 56591538 56591624 -92191848 + L1MA4A LINE L1 5397 5480 -823 2088 138 0 0 chr11 56591624 56591913 -92191559 - AluSx SINE Alu -23 289 1 5102 130 42 30 chr11 56591913 56592721 -92190751 + L1MA4A LINE L1 5480 6302 -1 2841 149 28 2 chr11 56592919 56593389 -92190083 - L1PA16 LINE L1 -1 6165 5684 183 309 15 0 chr11 56595027 56595095 -92188377 - L2 LINE L2 -551 2763 2695 215 371 53 0 chr11 56595263 56595395 -92188077 - L2 LINE L2 -768 2546 2408 453 279 47 104 chr11 56595530 56595827 -92187645 - L2 LINE L2 0 3272 2993 241 200 0 20 chr11 56595962 56596012 -92187460 - MIR SINE MIR -10 252 204 1894 167 0 3 chr11 56596020 56596320 -92187152 - AluSx SINE Alu -13 299 1 245 239 45 15 chr11 56596320 56596387 -92187085 + L2 LINE L2 3215 3283 -30 669 246 41 12 chr11 56596403 56596574 -92186898 - MIR SINE MIR -68 194 19 2219 104 7 0 chr11 56596614 56596903 -92186569 + AluSx SINE Alu 1 291 -21 434 286 124 21 chr11 56596913 56597196 -92186276 - L2 LINE L2 -556 2758 2447 315 0 0 0 chr11 56598142 56598177 -92185295 + (CA)n Simple_repeat Simple_repeat 2 36 0 761 270 86 33 chr11 56598278 56598674 -92184798 - L1ME4a LINE L1 -12 6109 5693 793 261 28 52 chr11 56599187 56599533 -92183939 + MLT1I LTR MaLR 63 441 -5 2266 108 7 0 chr11 56600226 56600523 -92182949 - AluSx SINE Alu -12 300 2 294 315 98 7 chr11 56600583 56600726 -92182746 - MIR3 SINE MIR -15 193 38 1343 204 168 3 chr11 56600827 56601166 -92182306 - MSTD LTR MaLR -1 395 1 810 305 83 3 chr11 56601612 56601914 -92181558 + MER110 LTR ERV1 166 491 0 5671 114 121 46 chr11 56602029 56603068 -92180404 - MER4E-int LTR ERV1 -5640 1118 2 5605 63 47 21 chr11 56603069 56603091 -92180381 - MER4E LTR ERV1 0 766 746 1732 41 0 0 chr11 56603091 56603288 -92180184 + AluY SINE Alu 96 292 -19 5605 63 47 21 chr11 56603288 56604012 -92179460 - MER4E LTR ERV1 -20 746 1 2751 148 58 36 chr11 56604846 56605019 -92178453 - MER4E-int LTR ERV1 -113 6645 6477 2201 101 3 10 chr11 56605019 56605326 -92178146 - AluSx SINE Alu -6 306 2 2751 148 58 36 chr11 56605326 56605706 -92177766 - MER4E-int LTR ERV1 -281 6477 6080 2181 134 0 0 chr11 56605706 56606005 -92177467 - AluSx SINE Alu -13 299 1 690 290 117 16 chr11 56607727 56607975 -92175497 + Charlie8 DNA MER1_type 2 274 -2143 354 232 29 107 chr11 56608144 56608270 -92175202 - MER112 DNA MER1_type -1 259 125 1234 160 4 84 chr11 56608270 56608508 -92174964 + MER20 DNA MER1_type 1 219 0 354 232 29 107 chr11 56608508 56608546 -92174926 - MER112 DNA MER1_type -135 125 86 2166 75 68 0 chr11 56608546 56608825 -92174647 - AluY SINE Alu -13 298 1 354 232 29 107 chr11 56608825 56608931 -92174541 - MER112 DNA MER1_type -174 86 9 24 0 0 0 chr11 56609301 56609325 -92174147 + AT_rich Low_complexity Low_complexity 1 24 0 2183 115 0 0 chr11 56610349 56610636 -92172836 - AluSx SINE Alu -25 287 1 1959 105 18 0 chr11 56610675 56610980 -92172492 - AluSx SINE Alu 0 310 1 304 88 35 0 chr11 56611635 56611692 -92171780 + (TGG)n Simple_repeat Simple_repeat 3 61 0 2519 87 0 0 chr11 56612757 56613069 -92170403 + AluSx SINE Alu 1 312 0 191 349 48 0 chr11 56613991 56614054 -92169418 + L2 LINE L2 3199 3264 -8 458 251 134 17 chr11 56614179 56614358 -92169114 - MIR SINE MIR 0 262 63 28 71 0 0 chr11 56614361 56614417 -92169055 + AT_rich Low_complexity Low_complexity 1 56 0 2034 116 24 3 chr11 56615150 56615443 -92168029 - AluSx SINE Alu -13 299 1 2069 128 17 3 chr11 56615761 56616057 -92167415 - AluSx SINE Alu -12 300 1 1827 160 3 10 chr11 56616105 56616411 -92167061 + AluJb SINE Alu 1 304 -8 1062 211 143 23 chr11 56617505 56617674 -92165798 + Charlie1 DNA MER1_type 1426 1573 -1188 2392 84 0 3 chr11 56617674 56617972 -92165500 + AluSx SINE Alu 1 297 -15 1062 211 143 23 chr11 56617972 56618110 -92165362 + Charlie1 DNA MER1_type 1573 1770 -991 719 115 39 46 chr11 56618110 56618240 -92165232 - FLAM_C SINE Alu -3 140 12 3132 185 85 40 chr11 56618240 56618485 -92164987 + Charlie1 DNA MER1_type 1762 1995 -766 1836 163 25 3 chr11 56618485 56618767 -92164705 + AluJb SINE Alu 1 288 -24 3132 185 85 40 chr11 56618767 56619429 -92164043 + Charlie1 DNA MER1_type 1995 2760 -1 990 187 0 0 chr11 56619469 56619624 -92163848 + AluJo SINE Alu 1 155 -157 1607 155 159 0 chr11 56620412 56620664 -92162808 - AluSx SINE Alu -10 292 1 182 211 58 0 chr11 56624124 56624176 -92159296 - MIR SINE MIR -113 149 95 313 336 52 9 chr11 56624946 56625062 -92158410 - L2 LINE L2 -1 3312 3192 338 91 0 0 chr11 56625089 56625133 -92158339 - 5S rRNA rRNA -77 44 1 2074 104 46 0 chr11 56625285 56625565 -92157907 - AluSx SINE Alu -19 293 1 260 325 83 17 chr11 56625756 56625876 -92157596 - MER5A DNA MER1_type -22 167 40 2285 110 0 13 chr11 56625877 56626194 -92157278 - AluSq SINE Alu 0 313 1 2312 105 3 0 chr11 56627270 56627574 -92155898 - AluSp SINE Alu -8 305 1 808 318 142 34 chr11 56627698 56628436 -92155036 + L1MEd LINE L1 7 824 -5295 657 257 204 8 chr11 56628478 56629074 -92154398 + L1MEd LINE L1 915 1670 -4640 401 92 215 0 chr11 56629275 56629340 -92154132 - MADE1 DNA Mariner -1 79 1 2368 60 0 0 chr11 56629732 56630013 -92153459 + AluY SINE Alu 23 303 -8 2263 92 3 0 chr11 56630429 56630722 -92152750 - AluSx SINE Alu -18 294 1 699 214 148 6 chr11 56630822 56631004 -92152468 + MIR SINE MIR 27 234 -28 196 329 14 29 chr11 56631508 56631578 -92151894 - L2 LINE L2 -13 3259 3191 215 255 204 0 chr11 56631644 56631742 -92151730 - L2 LINE L2 -618 2696 2579 201 170 113 0 chr11 56631817 56631870 -92151602 - MIR SINE MIR -46 216 158 206 236 351 14 chr11 56631890 56631937 -92151535 - MIR SINE MIR 0 262 232 1861 138 8 4 chr11 56631937 56632205 -92151267 - AluSx SINE Alu -43 269 1 206 236 351 14 chr11 56632205 56632305 -92151167 - MIR SINE MIR -30 232 65 1265 177 0 5 chr11 56632460 56632675 -92150797 + AluY SINE Alu 87 300 -11 535 323 72 39 chr11 56632706 56633040 -92150432 - L2 LINE L2 -897 2417 2073 2104 118 44 0 chr11 56633075 56633372 -92150100 - AluSx SINE Alu -2 310 1 2052 108 59 0 chr11 56634577 56634863 -92148609 - AluSx SINE Alu -9 303 1 5320 117 117 70 chr11 56635780 56636400 -92147072 - Tigger3b DNA MER2_type -1799 1229 640 1456 158 49 8 chr11 56636400 56636647 -92146825 + AluJo SINE Alu 26 282 -30 5320 117 117 70 chr11 56636647 56636871 -92146601 - Tigger3b DNA MER2_type -2388 640 428 1849 136 3 30 chr11 56636871 56637173 -92146299 - AluJo SINE Alu -17 295 2 5320 117 117 70 chr11 56637173 56637417 -92146055 - Tigger3b DNA MER2_type -2600 428 88 278 279 89 25 chr11 56637542 56637700 -92145772 - L2 LINE L2 -189 3083 2916 1954 216 157 17 chr11 56637732 56638439 -92145033 + L1MC5 LINE L1 7105 7910 -51 1927 140 0 0 chr11 56639616 56639888 -92143584 + AluJo SINE Alu 21 292 -20 1952 138 21 14 chr11 56640953 56641255 -92142217 + AluSx SINE Alu 1 304 0 1416 149 18 9 chr11 56641365 56641586 -92141886 + AluJb SINE Alu 1 223 -89 915 239 102 20 chr11 56641743 56642143 -92141329 - L1ME4a LINE L1 -173 5989 5558 * 2827 150 91 61 chr11 56642142 56642426 -92141046 - L1MC2 LINE L1 -433 5911 5637 2461 125 120 5 chr11 56642426 56642810 -92140662 + MSTA LTR MaLR 1 428 0 2827 150 91 61 chr11 56642810 56643180 -92140292 - L1MC2 LINE L1 -707 5637 5240 2274 102 7 0 chr11 56643187 56643490 -92139982 - AluSx SINE Alu -7 305 1 598 151 226 0 chr11 56643491 56643597 -92139875 - AluJo SINE Alu -25 287 158 590 165 0 0 chr11 56643596 56643681 -92139791 - AluJo SINE Alu -204 108 24 * 923 98 0 0 chr11 56643681 56643803 -92139669 - L1P4 LINE L1 -435 5730 5606 221 56 0 28 chr11 56643803 56643839 -92139633 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 3548 43 32 0 chr11 56643839 56644272 -92139200 - L1PA4 LINE L1 -24 6131 5684 3050 136 0 2 chr11 56644272 56644686 -92138786 + L1PA15 LINE L1 5734 6165 0 184 0 62 31 chr11 56644722 56644754 -92138718 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 227 189 0 0 chr11 56644754 56644791 -92138681 - AluJo SINE Alu -271 37 1 323 161 0 0 chr11 56644793 56644849 -92138623 - L1MC2 LINE L1 -900 5246 5191 189 0 0 0 chr11 56645138 56645159 -92138313 + (A)n Simple_repeat Simple_repeat 1 21 0 1903 137 45 0 chr11 56645244 56645536 -92137936 + MER7A DNA MER2_type 2 304 -42 774 174 94 7 chr11 56645537 56645686 -92137786 + MER21B LTR ERV1 174 335 -528 328 176 0 0 chr11 56645673 56645724 -92137748 - MER21B LTR ERV1 -498 365 315 * 482 202 77 0 chr11 56646164 56646268 -92137204 - LTR48B LTR ERV1 0 644 533 913 184 60 56 chr11 56646298 56646756 -92136716 + LTR49-int LTR ERV1 154 1458 -4488 1361 71 61 5 chr11 56646756 56646954 -92136518 - MER4E LTR ERV1 0 766 558 869 227 18 31 chr11 56647005 56647291 -92136181 + AluSx SINE Alu 30 311 -1 1837 159 68 6 chr11 56647295 56647660 -92135812 - MER4E-int LTR ERV1 -4276 2482 2095 2355 84 7 3 chr11 56647662 56647960 -92135512 - AluSq SINE Alu -14 299 1 2387 82 7 3 chr11 56647960 56648265 -92135207 - AluSq SINE Alu -3 310 5 2077 97 14 24 chr11 56648293 56648583 -92134889 - AluSg SINE Alu -20 290 5 1694 111 99 23 chr11 56648587 56648929 -92134543 - MER4E-int LTR ERV1 -4475 2123 1756 5526 117 117 44 chr11 56648943 56650023 -92133449 - MER4E-int LTR ERV1 -5599 1159 2 5307 63 47 21 chr11 56650024 56650046 -92133426 - MER4E LTR ERV1 0 766 746 1752 41 0 0 chr11 56650046 56650243 -92133229 + AluY SINE Alu 96 292 -19 5307 63 47 21 chr11 56650243 56650967 -92132505 - MER4E LTR ERV1 -20 746 1 3803 131 77 42 chr11 56651801 56651971 -92131501 - MER4E-int LTR ERV1 -113 6645 6482 2261 110 3 3 chr11 56651971 56652281 -92131191 - AluSx SINE Alu -1 311 2 3803 131 77 42 chr11 56652281 56652661 -92130811 - MER4E-int LTR ERV1 -276 6482 6058 2294 111 0 3 chr11 56652661 56652958 -92130514 - AluSx SINE Alu -16 296 1 3803 131 77 42 chr11 56652958 56653171 -92130301 - MER4E-int LTR ERV1 -700 6058 5854 1442 99 9 90 chr11 56653204 56653343 -92130129 - MER4E-int LTR ERV1 -1898 4860 4711 2362 109 0 3 chr11 56653343 56653654 -92129818 - AluSg SINE Alu 0 310 1 1442 99 9 90 chr11 56653654 56653860 -92129612 - MER4E-int LTR ERV1 -2047 4711 4452 * 3840 135 42 17 chr11 56653859 56654509 -92128963 - MER4E-int LTR ERV1 -2670 4088 3423 2394 122 102 88 chr11 56654495 56654574 -92128898 - MER4E-int LTR ERV1 -3659 3099 3023 * 2156 84 4 11 chr11 56654574 56654880 -92128592 - AluSg SINE Alu 0 315 12 2394 122 102 88 chr11 56654880 56654892 -92128580 - MER4E-int LTR ERV1 -3735 3023 3013 2391 96 0 34 chr11 56654892 56655214 -92128258 - AluSq SINE Alu -2 311 1 2394 122 102 88 chr11 56655214 56655277 -92128195 - MER4E-int LTR ERV1 -3745 3013 2952 2042 137 7 0 chr11 56655277 56655577 -92127895 - AluSx SINE Alu -6 306 5 2394 122 102 88 chr11 56655577 56656024 -92127448 - MER4E-int LTR ERV1 -3806 2952 2486 1604 184 0 21 chr11 56656110 56656398 -92127074 + AluJo SINE Alu 1 282 -30 40 0 0 0 chr11 56656405 56656445 -92127027 + AT_rich Low_complexity Low_complexity 1 40 0 1532 200 20 13 chr11 56656465 56656765 -92126707 + MER34-int LTR ERV1 602 903 -5428 1603 141 119 11 chr11 56656796 56657065 -92126407 + AluSg1 SINE Alu 1 298 -11 23 0 0 0 chr11 56657066 56657089 -92126383 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr11 56657090 56657110 -92126362 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 1852 131 33 4 chr11 56657110 56657384 -92126088 - AluSx SINE Alu -30 282 1 669 241 29 39 chr11 56657446 56657653 -92125819 + MER34-int LTR ERV1 1085 1289 -5042 1930 151 17 0 chr11 56657713 56658004 -92125468 + AluSx SINE Alu 1 296 -16 232 254 0 16 chr11 56658068 56658131 -92125341 + (CATA)n Simple_repeat Simple_repeat 1 62 0 482 286 15 8 chr11 56658131 56658264 -92125208 - MER4E-int LTR ERV1 -4231 2100 1967 1060 120 0 0 chr11 56658269 56658402 -92125070 - AluSq/x SINE Alu -179 133 1 1305 156 41 165 chr11 56658403 56658591 -92124881 - MER4E-int LTR ERV1 -4350 1981 1771 2121 126 19 10 chr11 56658591 56658900 -92124572 + AluJb SINE Alu 1 312 0 1305 156 41 165 chr11 56658900 56659075 -92124397 - MER4E-int LTR ERV1 -4560 1771 1680 2435 76 7 3 chr11 56659075 56659376 -92124096 + AluSg SINE Alu 1 302 -8 1305 156 41 165 chr11 56659376 56659453 -92124019 - MER4E-int LTR ERV1 -4651 1680 1595 2282 89 0 10 chr11 56659455 56659757 -92123715 + AluSg SINE Alu 1 299 -11 257 67 0 22 chr11 56660632 56660677 -92122795 + (TCTCCC)n Simple_repeat Simple_repeat 1 44 0 5910 70 20 55 chr11 56660677 56661574 -92121898 + SVA Other Other 1 866 -520 6323 65 53 43 chr11 56661633 56662579 -92120893 + SVA Other Other 432 1386 0 544 158 8 31 chr11 56662588 56662715 -92120757 + MER34-int LTR ERV1 4170 4293 -3827 2372 112 0 3 chr11 56662737 56663051 -92120421 - AluSq SINE Alu 0 313 1 429 200 81 62 chr11 56663051 56663201 -92120271 + MER34-int LTR ERV1 4581 4717 -1614 * 1059 198 128 61 chr11 56663200 56663279 -92120193 + MER34-int LTR ERV1 5693 5765 -566 1642 185 7 20 chr11 56663279 56663582 -92119890 + AluJo SINE Alu 6 304 -8 1059 198 128 61 chr11 56663582 56663947 -92119525 + MER34-int LTR ERV1 5765 6167 -164 277 267 12 47 chr11 56664071 56664157 -92119315 + MER34 LTR ERV1 23 105 -437 * 1539 204 109 21 chr11 56664135 56664611 -92118861 + LTR48B LTR ERV1 127 644 0 239 320 67 0 chr11 56664771 56664846 -92118626 + L2 LINE L2 3229 3308 -5 303 306 73 7 chr11 56664848 56664998 -92118474 + MIR SINE MIR 8 167 -67 2159 99 14 3 chr11 56666519 56666811 -92116661 + AluSx SINE Alu 1 295 -17 243 297 9 69 chr11 56666857 56666989 -92116483 + MIR SINE MIR 43 165 -61 763 284 115 22 chr11 56666989 56667183 -92116289 - L2 LINE L2 -5 3308 3073 1996 117 21 0 chr11 56667183 56667473 -92115999 + AluJo SINE Alu 1 296 -16 763 284 115 22 chr11 56667473 56667591 -92115881 - L2 LINE L2 -240 3073 2967 1404 139 53 10 chr11 56667614 56667823 -92115649 - AluJo SINE Alu -94 218 1 1766 143 3 37 chr11 56668445 56668745 -92114727 - AluJo SINE Alu -14 298 9 1776 151 0 64 chr11 56668826 56668986 -92114486 - AluSx SINE Alu -19 293 161 2313 97 7 0 chr11 56668986 56669276 -92114196 - AluSp SINE Alu -21 292 1 1776 151 0 64 chr11 56669276 56669427 -92114045 - AluSx SINE Alu -151 161 2 2082 143 0 0 chr11 56669595 56669888 -92113584 + AluSx SINE Alu 1 293 -19 2284 103 30 0 chr11 56669965 56670266 -92113206 + AluSx SINE Alu 1 310 -2 198 91 0 0 chr11 56670483 56670516 -92112956 + (GA)n Simple_repeat Simple_repeat 1 33 0 264 122 0 0 chr11 56670568 56670609 -92112863 + MADE1 DNA Mariner 1 41 -39 2260 114 20 35 chr11 56670782 56670991 -92112481 + MER1B DNA MER1_type 1 205 -2505 1617 133 34 0 chr11 56670991 56671224 -92112248 - AluSq SINE Alu -72 241 1 2260 114 20 35 chr11 56671224 56671356 -92112116 + MER1B DNA MER1_type 205 337 0 308 178 287 0 chr11 56671788 56671889 -92111583 + MIR SINE MIR 15 144 -118 1921 121 0 96 chr11 56671936 56672268 -92111204 + AluSx SINE Alu 1 300 -12 226 349 75 9 chr11 56672325 56672431 -92111041 + L2 LINE L2 3154 3266 -6 222 214 0 0 chr11 56672472 56672514 -92110958 + (TATATG)n Simple_repeat Simple_repeat 6 47 0 22 35 0 0 chr11 56672731 56672760 -92110712 + AT_rich Low_complexity Low_complexity 1 29 0 1073 63 0 0 chr11 56672760 56672886 -92110586 + AluSc SINE Alu 1 126 -183 198 0 0 0 chr11 56672886 56672908 -92110564 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 2178 108 0 0 chr11 56672912 56673189 -92110283 + AluSx SINE Alu 28 304 -8 2924 70 0 0 chr11 56673248 56673619 -92109853 - L1PA5 LINE L1 -2 6152 5782 991 127 115 6 chr11 56674417 56674574 -92108898 + FAM SINE Alu 2 175 0 2507 61 0 0 chr11 56674580 56674874 -92108598 + AluSg SINE Alu 1 294 -16 648 204 7 49 chr11 56675226 56675368 -92108104 + FLAM_C SINE Alu 7 142 -1 310 342 53 59 chr11 56675779 56675966 -92107506 - L2 LINE L2 -38 3234 3049 2232 124 0 13 chr11 56676185 56676500 -92106972 + AluSx SINE Alu 1 311 -1 180 0 0 0 chr11 56676668 56676688 -92106784 + (A)n Simple_repeat Simple_repeat 1 20 0 2315 93 7 3 chr11 56676896 56677197 -92106275 + AluSc SINE Alu 5 306 -3 388 224 289 0 chr11 56677558 56677710 -92105762 - MER58C DNA MER1_type -2 213 18 353 344 94 0 chr11 56678354 56678482 -92104990 + MIR3 SINE MIR 8 147 -61 384 260 235 30 chr11 56678571 56678771 -92104701 - L1ME4a LINE L1 0 6121 5881 225 0 0 0 chr11 56678803 56678828 -92104644 + (T)n Simple_repeat Simple_repeat 1 25 0 4949 57 10 7 chr11 56679003 56679622 -92103850 - SVA Other Other -754 632 12 2193 109 0 7 chr11 56680496 56680799 -92102673 - AluSx SINE Alu -11 301 1 2024 135 10 3 chr11 56681218 56681536 -92101936 + AluSq SINE Alu 1 313 0 736 173 63 0 chr11 56681538 56681665 -92101807 + AluJb SINE Alu 131 265 -47 2268 68 7 7 chr11 56681674 56681970 -92101502 - AluSg SINE Alu -14 296 1 2192 75 54 7 chr11 56682482 56682776 -92100696 - AluY SINE Alu -3 308 1 265 262 146 10 chr11 56682786 56682889 -92100583 + MLT1J1 LTR MaLR 206 322 -124 309 296 90 16 chr11 56682918 56683107 -92100365 - L1MC5 LINE L1 -36 7925 7723 2349 85 7 10 chr11 56683108 56683415 -92100057 + AluSq SINE Alu 1 306 -7 1912 226 107 33 chr11 56783463 56784220 -91999252 - HAL1 LINE L1 -700 1807 995 971 161 0 78 chr11 56784220 56784413 -91999059 + AluJo SINE Alu 1 178 -134 588 277 17 30 chr11 56784414 56784649 -91998823 - HAL1 LINE L1 -2185 322 91 326 226 26 133 chr11 56784728 56784962 -91998510 - L1MEd LINE L1 -5168 951 743 2000 133 10 3 chr11 56784962 56785264 -91998208 - AluSq SINE Alu 0 313 10 274 286 43 0 chr11 56785634 56785704 -91997768 + Tigger1 DNA MER2_type 279 351 -2067 7315 109 28 6 chr11 56785707 56786866 -91996606 + Tigger1 DNA MER2_type 1235 2418 0 373 279 24 17 chr11 56787219 56787405 -91996067 - L1MDa LINE L1 -861 2040 1771 325 288 22 36 chr11 56787410 56787549 -91995923 - L1MDa LINE L1 -5038 1492 1356 2009 115 0 17 chr11 56787552 56787865 -91995607 - AluSx SINE Alu 0 308 1 433 287 117 13 chr11 56788094 56788411 -91995061 - L1MC4a LINE L1 -1868 5940 5591 7686 22 1 0 chr11 56788419 56790007 -91993465 + L1PA3 LINE L1 4567 6155 0 230 0 0 32 chr11 56790010 56790041 -91993431 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 2293 91 10 3 chr11 56790871 56791180 -91992292 - AluSq SINE Alu 0 313 3 2071 107 0 86 chr11 56792380 56792717 -91990755 + AluSq SINE Alu 1 308 -5 298 280 13 0 chr11 56793610 56793685 -91989787 + MIR SINE MIR 162 237 -25 280 130 87 0 chr11 56794042 56794088 -91989384 + L2 LINE L2 3264 3313 0 863 142 0 15 chr11 56794349 56794483 -91988989 + FLAM_C SINE Alu 2 133 0 352 360 23 49 chr11 56795016 56795322 -91988150 - MLT1K LTR MaLR -162 426 129 843 240 0 5 chr11 56795934 56796134 -91987338 - MLT1E2 LTR MaLR -387 239 41 938 200 61 30 chr11 56796267 56796497 -91986975 - MER58 DNA MER1_type -61 280 44 2191 89 0 20 chr11 56796499 56796791 -91986681 + AluY SINE Alu 1 286 -25 5247 156 18 12 chr11 56797109 56798924 -91984548 - L1PA16 LINE L1 -2 6164 4341 254 318 87 77 chr11 56800057 56800368 -91983104 - L2 LINE L2 -88 3184 2871 257 215 165 13 chr11 56800419 56800498 -91982974 + MIR SINE MIR 161 251 -11 2132 143 0 0 chr11 56800743 56801044 -91982428 + AluSx SINE Alu 1 301 -11 1390 244 118 10 chr11 56801353 56801830 -91981642 + MLT1G1 LTR MaLR 10 587 -8 187 306 0 20 chr11 56801928 56801977 -91981495 - MIR SINE MIR -195 67 20 308 294 29 81 chr11 56802382 56802518 -91980954 + MIR SINE MIR 10 138 -124 228 248 107 91 chr11 56803241 56803300 -91980172 + MLT1J2 LTR MaLR 273 330 -120 961 243 14 9 chr11 56803300 56803514 -91979958 - MER58C DNA MER1_type 0 215 1 228 248 107 91 chr11 56803514 56803575 -91979897 + MLT1J2 LTR MaLR 330 395 -55 781 126 0 0 chr11 56804075 56804178 -91979294 + U6 snRNA snRNA 1 103 -4 2312 120 0 0 chr11 56804179 56804488 -91978984 - AluSx SINE Alu -3 309 1 237 120 120 0 chr11 56804502 56804552 -91978920 + L1PA16 LINE L1 6111 6166 0 273 277 24 36 chr11 56805085 56805168 -91978304 + MIR SINE MIR 2 83 -179 2079 70 3 89 chr11 56805389 56805704 -91977768 + AluSc SINE Alu 1 288 -21 203 267 60 134 chr11 56805708 56805925 -91977547 - MIR SINE MIR -12 250 50 358 316 29 7 chr11 56806736 56806875 -91976597 + MIR SINE MIR 17 158 -104 724 284 162 9 chr11 56806922 56807142 -91976330 + L2 LINE L2 2928 3113 -200 231 36 0 0 chr11 56807142 56807170 -91976302 + (CA)n Simple_repeat Simple_repeat 1 28 0 724 284 162 9 chr11 56807170 56807283 -91976189 + L2 LINE L2 3113 3312 -1 302 247 13 13 chr11 56807714 56807791 -91975681 - MIR SINE MIR -179 83 7 220 299 26 13 chr11 56808412 56808489 -91974983 + MIR SINE MIR 65 142 -120 2184 106 9 37 chr11 56808532 56808853 -91974619 + AluSx SINE Alu 1 312 0 230 303 192 0 chr11 56809674 56809773 -91973699 - L2 LINE L2 -11 3261 3144 2629 110 25 108 chr11 56810218 56810691 -91972781 - MER57B LTR ERV1 0 434 1 33 0 0 0 chr11 56810970 56811003 -91972469 + AT_rich Low_complexity Low_complexity 1 33 0 226 159 23 0 chr11 56811910 56811954 -91971518 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 383 284 99 27 chr11 56812171 56812379 -91971093 - L1ME3A LINE L1 -304 6260 6010 1093 167 44 0 chr11 56812379 56812559 -91970913 + MER5A DNA MER1_type 2 189 0 383 284 99 27 chr11 56812559 56812675 -91970797 - L1ME3A LINE L1 -554 6010 5904 461 289 104 53 chr11 56813218 56814176 -91969296 - L1ME3A LINE L1 -2848 3692 2686 4018 135 18 50 chr11 56814224 56814738 -91968734 - L1PA16 LINE L1 -9 6157 5671 2035 109 28 11 chr11 56814738 56815022 -91968450 - AluSx SINE Alu -23 289 1 4018 135 18 50 chr11 56815022 56815220 -91968252 - L1PA16 LINE L1 -495 5671 5468 279 81 0 0 chr11 56815220 56815257 -91968215 - MADE1 DNA Mariner -42 38 2 5035 186 28 47 chr11 56815258 56815319 -91968153 - L1M3 LINE L1 -710 5473 5412 1435 192 66 19 chr11 56815319 56815619 -91967853 - AluJo SINE Alu 0 313 1 5035 186 28 47 chr11 56815619 56815740 -91967732 - L1M3 LINE L1 -771 5412 5290 2286 83 7 0 chr11 56815740 56816030 -91967442 - AluSg1 SINE Alu -17 292 1 5035 186 28 47 chr11 56816030 56816546 -91966926 - L1M3 LINE L1 -893 5290 4766 2469 125 122 8 chr11 56816546 56816930 -91966542 + MSTA LTR MaLR 1 428 0 5035 186 28 47 chr11 56816930 56817320 -91966152 - L1M3 LINE L1 -1417 4766 4397 198 0 0 0 chr11 56817320 56817342 -91966130 + (TG)n Simple_repeat Simple_repeat 1 22 0 5035 186 28 47 chr11 56817342 56817610 -91965862 - L1M3 LINE L1 -1786 4397 4125 252 205 174 53 chr11 56817615 56817876 -91965596 - L1MDa LINE L1 -3856 2684 2399 7516 28 1 0 chr11 56818108 56819049 -91964423 - L1PA3 LINE L1 -39 6116 5175 276 143 0 0 chr11 56819049 56819073 -91964399 + (T)n Simple_repeat Simple_repeat 1 24 -25 8364 11 0 0 chr11 56819073 56820049 -91963423 - L1PA2 LINE L1 0 6155 5175 276 143 0 0 chr11 56820049 56820073 -91963399 + (T)n Simple_repeat Simple_repeat 23 49 0 19222 27 2 1 chr11 56820073 56822982 -91960490 - L1PA2 LINE L1 0 6155 3239 1719 109 58 68 chr11 56823001 56823295 -91960177 - AluSg SINE Alu -19 291 1 658 123 0 28 chr11 56823295 56823401 -91960071 - L1MA5 LINE L1 -9 6291 6189 1809 134 3 41 chr11 56823798 56824090 -91959382 - AluSg SINE Alu -29 281 1 2364 101 0 3 chr11 56824796 56825102 -91958370 - AluSq SINE Alu -8 305 1 1188 187 28 5 chr11 56825639 56825853 -91957619 + MER20 DNA MER1_type 1 219 0 396 286 52 104 chr11 56826045 56826148 -91957324 - MIR SINE MIR -7 255 148 2274 115 0 3 chr11 56826148 56826453 -91957019 + AluSx SINE Alu 1 304 -8 396 286 52 104 chr11 56826453 56826472 -91957000 - MIR SINE MIR -114 148 130 2255 123 66 0 chr11 56826472 56826806 -91956666 - MER46B DNA MER2_type -4 232 2 396 286 52 104 chr11 56826806 56826913 -91956559 - MIR SINE MIR -132 130 37 198 367 122 0 chr11 56826903 56826993 -91956479 + L2 LINE L2 3134 3234 -38 * 236 314 10 10 chr11 56827016 56827118 -91956354 + GA-rich Low_complexity Low_complexity 4 105 0 294 317 65 8 chr11 56827684 56827807 -91955665 - L2 LINE L2 -2 3270 3141 7509 35 3 0 chr11 56828560 56829452 -91954020 + L1P LINE L1 4175 5069 -1077 180 280 43 54 chr11 56831098 56831191 -91952281 + L2 LINE L2 3181 3272 0 409 245 183 12 chr11 56831237 56831435 -91952037 + MIR SINE MIR 3 244 -18 324 244 39 0 chr11 56831446 56831524 -91951948 - MIR3 SINE MIR -39 169 89 823 229 11 56 chr11 56831530 56831775 -91951697 + MIR SINE MIR 26 257 -5 1951 135 3 0 chr11 56832393 56832709 -91950763 + AluSx SINE Alu 1 317 0 2040 78 0 49 chr11 56833652 56833936 -91949536 + AluY SINE Alu 1 270 -41 1962 159 10 0 chr11 56834387 56834696 -91948776 + AluSx SINE Alu 1 312 0 391 338 45 7 chr11 56834834 56834988 -91948484 - MIR SINE MIR -80 182 23 620 110 184 9 chr11 56835039 56835148 -91948324 - MER96 DNA MER1_type? 0 175 48 1761 198 17 14 chr11 56835182 56835541 -91947931 + MLT2D LTR ERVL 1 360 -54 276 130 0 0 chr11 56835541 56835587 -91947885 + (TAGG)n Simple_repeat Simple_repeat 2 47 0 331 269 43 11 chr11 56835747 56835840 -91947632 + MIR SINE MIR 10 105 -157 1382 151 0 0 chr11 56835846 56836064 -91947408 - L1MA4 LINE L1 -4 6296 6079 682 147 0 15 chr11 56836385 56836521 -91946951 + (TCC)n Simple_repeat Simple_repeat 2 135 0 183 100 0 0 chr11 56836519 56836549 -91946923 + (TC)n Simple_repeat Simple_repeat 1 30 0 * 335 252 102 24 chr11 56837171 56837298 -91946174 - L3 LINE CR1 -72 1505 1369 292 371 91 0 chr11 56837362 56837494 -91945978 - L3 LINE CR1 -356 1221 1078 351 306 18 0 chr11 56837566 56837677 -91945795 - L2 LINE L2 -21 3251 3139 234 291 101 26 chr11 56837728 56838253 -91945219 + L1ME LINE L1 4981 5577 -544 238 253 32 105 chr11 56839215 56839310 -91944162 + MIR SINE MIR 68 155 -107 877 223 5 36 chr11 56839428 56839648 -91943824 + L1MB4 LINE L1 4898 5110 -1036 2776 173 18 0 chr11 56839648 56840106 -91943366 - Tigger3b DNA MER2_type -764 467 2 366 284 35 28 chr11 56840146 56840287 -91943185 - AluJb SINE Alu -160 142 1 4689 162 23 11 chr11 56840287 56841125 -91942347 + L1MB4 LINE L1 5303 6150 -30 279 309 107 0 chr11 56841209 56841293 -91942179 - L2 LINE L2 -25 3247 3155 203 161 0 89 chr11 56841284 56841340 -91942132 + L2 LINE L2 3263 3313 0 * 360 307 196 17 chr11 56843553 56843927 -91939545 + L2 LINE L2 2636 3072 -200 25 0 0 0 chr11 56843993 56844018 -91939454 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr11 56846140 56846164 -91937308 + AT_rich Low_complexity Low_complexity 1 24 0 3051 50 5 26 chr11 56846185 56846569 -91936903 + L1PA4 LINE L1 5777 6152 -3 2097 102 7 7 chr11 56846723 56847008 -91936464 - L1PA10 LINE L1 0 6168 5884 300 312 32 0 chr11 56847271 56847364 -91936108 + MIR SINE MIR 87 182 -80 508 272 114 60 chr11 56848240 56848538 -91934934 - L2 LINE L2 0 3313 3000 375 291 64 7 chr11 56848788 56848929 -91934543 + MIR SINE MIR 3 151 -111 9621 33 0 2 chr11 56848934 56851316 -91932156 + L1PA4 LINE L1 3706 6154 -1 250 133 0 0 chr11 56851319 56851364 -91932108 + L1PA13 LINE L1 6119 6163 0 1713 99 92 0 chr11 56851668 56851952 -91931520 + L1MA7 LINE L1 5980 6289 -2 608 338 59 4 chr11 56852709 56852946 -91930526 - MIR SINE MIR -2 260 11 267 250 0 95 chr11 56854924 56855008 -91928464 - L2 LINE L2 -6 3266 3191 424 290 99 41 chr11 56855403 56855619 -91927853 + MIR SINE MIR 16 233 -29 364 273 10 10 chr11 56855719 56855818 -91927654 - MIR SINE MIR -118 144 46 296 275 38 46 chr11 56856143 56856274 -91927198 - MIR SINE MIR -62 146 17 332 291 0 58 chr11 56856966 56857069 -91926403 - MIR SINE MIR -71 191 95 243 61 0 0 chr11 56857351 56857384 -91926088 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 909 228 11 0 chr11 56858109 56858298 -91925174 - MIR SINE MIR -66 196 6 226 333 14 0 chr11 56858518 56858590 -91924882 + MIR SINE MIR 156 228 -34 237 103 26 0 chr11 56858590 56858629 -91924843 + MADE1 DNA Mariner 1 40 -40 211 238 16 0 chr11 56859051 56859114 -91924358 + (TATAA)n Simple_repeat Simple_repeat 1 64 0 393 312 98 73 chr11 56859705 56859782 -91923690 - L1ME LINE L1 -433 5688 5614 1508 136 58 101 chr11 56859782 56860090 -91923382 - AluSx SINE Alu -17 295 1 393 312 98 73 chr11 56860090 56860410 -91923062 - L1ME LINE L1 -507 5614 5281 939 275 91 74 chr11 56860431 56860520 -91922952 - L2 LINE L2 -2 3311 3225 1198 81 0 0 chr11 56860520 56860680 -91922792 + L1PA8 LINE L1 6010 6169 -3 939 275 91 74 chr11 56860680 56861317 -91922155 - L2 LINE L2 -88 3225 2567 342 0 0 0 chr11 56861325 56861363 -91922109 + (CA)n Simple_repeat Simple_repeat 2 39 0 392 281 0 0 chr11 56861485 56861599 -91921873 + MLT1I LTR MaLR 292 405 -4 272 25 0 25 chr11 56861903 56861943 -91921529 - L1M2 LINE L1 -519 5781 5743 533 341 33 52 chr11 56862050 56862416 -91921056 - L1ME LINE L1 -1162 4984 4626 1261 261 41 24 chr11 56862892 56863309 -91920163 + LTR16A1 LTR ERVL 32 455 -2 2058 112 4 0 chr11 56863350 56863627 -91919845 + AluSx SINE Alu 1 278 -34 222 346 37 12 chr11 56864639 56864720 -91918752 + MIR3 SINE MIR 7 89 -119 639 338 55 5 chr11 56865548 56865767 -91917705 + MIR SINE MIR 21 250 -12 590 350 37 4 chr11 56865787 56866030 -91917442 + MIR SINE MIR 2 252 -10 491 339 33 16 chr11 56866889 56867072 -91916400 + MIR SINE MIR 20 205 -57 303 305 133 8 chr11 56867443 56867571 -91915901 + MIR SINE MIR 85 228 -34 21 57 0 0 chr11 56867747 56867782 -91915690 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr11 56867877 56867901 -91915571 + AT_rich Low_complexity Low_complexity 1 24 0 224 308 60 60 chr11 56868082 56868215 -91915257 - MIR3 SINE MIR -4 204 72 297 300 66 35 chr11 56868570 56868761 -91914711 + MIR SINE MIR 19 209 -53 267 31 0 0 chr11 56869764 56869796 -91913676 + (TA)n Simple_repeat Simple_repeat 2 33 0 269 208 78 0 chr11 56869929 56870006 -91913466 - MIR SINE MIR 0 262 180 824 112 8 8 chr11 56870006 56870140 -91913332 + L1PB1 LINE L1 6017 6150 -1 290 237 87 11 chr11 56870296 56870391 -91913081 - MIR SINE MIR -49 159 52 398 331 208 4 chr11 56870631 56870900 -91912572 + L3 LINE CR1 1251 1574 -3 200 304 98 43 chr11 56873024 56873116 -91910356 + L2 LINE L2 3180 3276 -37 293 326 163 0 chr11 56873257 56873398 -91910074 + MIR SINE MIR 34 197 -65 383 271 163 17 chr11 56874035 56874323 -91909149 + L1ME LINE L1 5408 5737 -433 531 261 31 81 chr11 56874338 56874560 -91908912 + MLT1J LTR MaLR 244 454 -57 458 186 41 0 chr11 56875075 56875172 -91908300 - L1MA8 LINE L1 -1 6290 6190 278 172 17 0 chr11 56875336 56875394 -91908078 + L1MA8 LINE L1 6188 6246 -45 311 62 21 0 chr11 56875412 56875460 -91908012 - L1MA8 LINE L1 -132 6159 6111 247 161 32 81 chr11 56875782 56875844 -91907628 + MIR SINE MIR 81 139 -69 295 342 87 20 chr11 56876787 56876936 -91906536 + MIR SINE MIR 76 234 -28 222 274 178 0 chr11 56877306 56877379 -91906093 + MIR3 SINE MIR 74 159 -49 186 214 71 0 chr11 56877578 56877620 -91905852 + L3 LINE CR1 1525 1569 -8 2169 123 0 17 chr11 56878292 56878594 -91904878 - AluSx SINE Alu -15 297 1 351 315 136 16 chr11 56879963 56880147 -91903325 + MIR SINE MIR 51 256 -6 236 289 0 53 chr11 56880249 56880325 -91903147 + L3 LINE CR1 1180 1251 -326 280 250 80 10 chr11 56880476 56880576 -91902896 - MER91C DNA MER1_type -32 108 2 4681 188 33 25 chr11 56882803 56882878 -91900594 + L1MA10 LINE L1 4449 4522 -1812 4673 67 2 3 chr11 56882878 56883489 -91899983 + L1PA6 LINE L1 5545 6154 0 4681 188 33 25 chr11 56883489 56885268 -91898204 + L1MA10 LINE L1 4522 6321 -13 229 331 52 22 chr11 56885464 56885600 -91897872 + MIR SINE MIR 49 188 -74 239 276 0 0 chr11 56885724 56885782 -91897690 - MLT1J1 LTR MaLR -123 323 266 4910 210 73 30 chr11 56886632 56887183 -91896289 + L1M2 LINE L1 1369 1894 -4954 2608 125 3 3 chr11 56887183 56887558 -91895914 + THE1C LTR MaLR 1 375 0 4910 210 73 30 chr11 56887558 56888498 -91894974 + L1M2 LINE L1 1894 2924 -3924 2153 140 18 18 chr11 56888503 56888555 -91894917 + L1P5 LINE L1 4995 5046 -1108 2298 98 3 0 chr11 56888555 56888851 -91894621 + AluSp SINE Alu 1 297 -16 2153 140 18 18 chr11 56888851 56889408 -91894064 + L1P5 LINE L1 5046 5599 -555 1878 146 16 32 chr11 56889478 56889855 -91893617 - L1MA4 LINE L1 -201 6099 5729 556 305 48 55 chr11 56889840 56890335 -91893137 + L1ME2 LINE L1 1593 2084 -4312 * 530 175 130 32 chr11 56890383 56890537 -91892935 + MLT1H LTR MaLR 152 320 -229 2053 259 51 35 chr11 56890677 56891899 -91891573 + L1ME2 LINE L1 2039 3237 -2978 877 48 0 0 chr11 56891942 56892072 -91891400 - AluY SINE Alu 0 307 178 377 226 89 123 chr11 56892154 56892512 -91890960 + L1ME2 LINE L1 3361 3706 -2509 2051 239 41 18 chr11 56892547 56893157 -91890315 - L1ME1 LINE L1 -64 6102 5479 1731 207 75 85 chr11 56893156 56893460 -91890012 + L1ME2 LINE L1 5617 5913 -320 * 1550 149 9 98 chr11 56893460 56893598 -91889874 + AluJb SINE Alu 1 97 -215 2125 137 0 0 chr11 56893598 56893898 -91889574 + AluSx SINE Alu 1 300 -12 1550 149 9 98 chr11 56893898 56894075 -91889397 + AluJb SINE Alu 97 288 -24 1731 207 75 85 chr11 56894075 56894384 -91889088 + L1ME2 LINE L1 5913 6224 -9 231 218 0 0 chr11 56894450 56894505 -91888967 + GA-rich Low_complexity Low_complexity 2 56 0 2351 128 13 13 chr11 56894805 56895180 -91888292 + THE1C LTR MaLR 1 375 0 4629 164 16 7 chr11 56896166 56896812 -91886660 - L1PB4 LINE L1 -12 6144 5485 2108 108 0 0 chr11 56896812 56897089 -91886383 - AluY SINE Alu 0 311 35 4629 164 16 7 chr11 56897089 56897357 -91886115 - L1PB4 LINE L1 -671 5485 5221 522 246 86 36 chr11 56897833 56898296 -91885176 - MER114 LTR ERV -26 622 114 21187 94 8 13 chr11 56898298 56901424 -91882048 + L1PA8 LINE L1 1985 5126 -1046 2280 113 0 3 chr11 56901424 56901726 -91881746 + AluSq SINE Alu 1 301 -12 21187 94 8 13 chr11 56901726 56902461 -91881011 + L1PA8 LINE L1 5126 5826 -346 1376 122 194 12 chr11 56902461 56902708 -91880764 + AluSg1 SINE Alu 1 292 -17 21187 94 8 13 chr11 56902708 56903046 -91880426 + L1PA8 LINE L1 5826 6164 -8 492 198 24 24 chr11 56903156 56903282 -91880190 + L1ME3A LINE L1 5839 5964 -206 4920 154 29 16 chr11 56903450 56904531 -91878941 - L1MA7 LINE L1 -1 6290 5200 595 301 224 0 chr11 56904527 56904813 -91878659 - L1M3a LINE L1 -5605 350 1 * 1692 178 43 35 chr11 56904948 56905370 -91878102 + L1MA10 LINE L1 5903 6327 -7 24 0 0 0 chr11 56905450 56905474 -91877998 + AT_rich Low_complexity Low_complexity 1 24 0 3550 183 0 0 chr11 56905550 56906234 -91877238 - L1 LINE L1 -1897 4249 3566 3556 210 20 6 chr11 56906262 56907144 -91876328 + L1 LINE L1 4265 5159 -987 6111 60 75 20 chr11 56907245 56908658 -91874814 + L1PA8 LINE L1 4706 6170 -2 1073 135 0 0 chr11 56910219 56910389 -91873083 - L1PA14 LINE L1 -2 6159 5990 2038 125 33 10 chr11 56910787 56911090 -91872382 - AluSx SINE Alu -2 310 1 2059 117 0 49 chr11 56911980 56912306 -91871166 + AluSx SINE Alu 1 310 -2 231 61 0 0 chr11 56912383 56912416 -91871056 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 1699 184 14 0 chr11 56912416 56912704 -91870768 - AluJb SINE Alu -20 292 1 218 308 39 29 chr11 56913632 56913736 -91869736 - MIR SINE MIR -72 190 86 2054 127 13 35 chr11 56913923 56914239 -91869233 - AluSx SINE Alu -3 309 1 334 284 116 16 chr11 56914470 56914620 -91868852 + MIR SINE MIR 36 149 -59 436 363 0 0 chr11 56914817 56914952 -91868520 - MIR3 SINE MIR -28 180 46 2257 92 0 16 chr11 56914960 56915263 -91868209 + AluY SINE Alu 1 298 -13 284 68 0 23 chr11 56916161 56916205 -91867267 + (GGGA)n Simple_repeat Simple_repeat 3 45 0 325 347 32 8 chr11 56916428 56916552 -91866920 + MIR SINE MIR 17 143 -65 267 311 6 30 chr11 56916956 56917120 -91866352 + (TCTG)n Simple_repeat Simple_repeat 1 160 0 206 62 31 0 chr11 56917354 56917386 -91866086 + (TG)n Simple_repeat Simple_repeat 2 34 0 196 299 58 81 chr11 56917933 56918020 -91865452 + MIR3 SINE MIR 85 169 -39 351 180 0 0 chr11 56918861 56918922 -91864550 + MIR SINE MIR 180 240 -22 676 253 37 0 chr11 56918956 56919118 -91864354 - MIR SINE MIR -64 198 31 215 363 88 39 chr11 56919199 56919403 -91864069 - L2 LINE L2 -14 3258 3045 422 279 122 54 chr11 56920713 56920935 -91862537 + MIR SINE MIR 20 256 -6 754 155 0 0 chr11 56921556 56921672 -91861800 - AluSg/x SINE Alu -128 184 69 558 267 127 9 chr11 56922169 56922390 -91861082 - LTR33 LTR ERVL -273 248 2 2359 96 26 0 chr11 56922580 56922882 -91860590 - AluSx SINE Alu -2 310 1 394 306 108 5 chr11 56924238 56924424 -91859048 + MIR SINE MIR 2 206 -56 2147 127 27 0 chr11 56925009 56925308 -91858164 + AluSx SINE Alu 1 307 -5 1478 234 12 6 chr11 56925574 56925908 -91857564 - MER58B DNA MER1_type -1 340 5 280 159 16 79 chr11 56926019 56926082 -91857390 - MER63 DNA MER1_type -25 1037 979 490 186 49 0 chr11 56926085 56926187 -91857285 - MER63 DNA MER1_type -87 749 17 1283 170 84 64 chr11 56926270 56926482 -91856990 - MLT1A1 LTR MaLR 0 365 142 2136 135 0 3 chr11 56926482 56926779 -91856693 - AluJb SINE Alu -16 296 1 1283 170 84 64 chr11 56926779 56926924 -91856548 - MLT1A1 LTR MaLR -223 142 1 465 318 103 9 chr11 56927017 56927231 -91856241 - MIR SINE MIR 0 262 29 2013 125 37 3 chr11 56927349 56927644 -91855828 - AluSx SINE Alu -7 305 1 191 312 78 0 chr11 56927745 56927822 -91855650 - L2 LINE L2 -64 3249 3167 1344 154 0 34 chr11 56928144 56928411 -91855061 - L1MA9 LINE L1 -1 6311 6054 241 47 47 0 chr11 56928623 56928666 -91854806 + (TA)n Simple_repeat Simple_repeat 1 45 0 912 233 0 9 chr11 56928693 56928916 -91854556 - L1PA3 LINE L1 -9 6146 5926 6341 73 6 0 chr11 56929291 56930125 -91853347 + L1PA6 LINE L1 5303 6141 -13 4591 132 51 1 chr11 56930127 56930928 -91852544 + L1PA16 LINE L1 5315 6155 -11 960 265 45 64 chr11 56930964 56931486 -91851986 - MLT1H LTR MaLR -1 541 1 22 0 0 0 chr11 56931549 56931571 -91851901 + AT_rich Low_complexity Low_complexity 1 22 0 181 94 0 62 chr11 56932039 56932071 -91851401 + L3b LINE CR1 1543 1572 -11 1940 145 14 24 chr11 56932787 56933083 -91850389 - AluSx SINE Alu -19 293 1 226 250 78 69 chr11 56933825 56933941 -91849531 - L3 LINE CR1 -3 1574 1458 863 155 0 0 chr11 56934171 56934300 -91849172 + FLAM_C SINE Alu 1 129 -4 1131 214 54 80 chr11 56934405 56934778 -91848694 + MLT1E1 LTR MaLR 287 649 -5 238 254 0 0 chr11 56934792 56934805 -91848667 + MIR SINE MIR 177 189 -73 847 269 42 5 chr11 56934805 56935021 -91848451 - MER58A DNA MER1_type 0 224 1 238 254 0 0 chr11 56935021 56935070 -91848402 + MIR SINE MIR 188 239 -23 1793 203 3 3 chr11 56935172 56935517 -91847955 - MLT1A1 LTR MaLR 0 365 21 6586 100 75 20 chr11 56935595 56937314 -91846158 + L1PA8 LINE L1 4400 6165 -7 492 198 24 24 chr11 56937423 56937549 -91845923 + L1ME3A LINE L1 5839 5964 -206 4920 154 29 16 chr11 56937717 56938798 -91844674 - L1MA7 LINE L1 -1 6290 5200 595 301 224 0 chr11 56938794 56939080 -91844392 - L1M3a LINE L1 -5605 350 1 * 1692 178 43 35 chr11 56939215 56939637 -91843835 + L1MA10 LINE L1 5903 6327 -7 24 0 0 0 chr11 56939717 56939741 -91843731 + AT_rich Low_complexity Low_complexity 1 24 0 3550 183 0 0 chr11 56939817 56940501 -91842971 - L1 LINE L1 -1897 4249 3566 4249 202 24 5 chr11 56940529 56941577 -91841895 + L1 LINE L1 4265 5332 -814 2285 57 13 0 chr11 56941578 56941893 -91841579 + L1P LINE L1 4873 5191 -955 560 86 0 0 chr11 56941888 56941969 -91841503 + L1PA3 LINE L1 5970 6050 -105 * 397 301 138 32 chr11 56942105 56942417 -91841055 + L2 LINE L2 2430 2774 -540 242 354 79 14 chr11 56942523 56942738 -91840734 + L2 LINE L2 2944 3172 -141 412 216 32 49 chr11 56943264 56943338 -91840134 + L1 LINE L1 2253 2327 -3819 7107 44 32 1 chr11 56943338 56944208 -91839264 - MER11D LTR ERVK 0 897 1 412 216 32 49 chr11 56944208 56944318 -91839154 + L1 LINE L1 2327 2434 -3712 2081 167 30 10 chr11 56944462 56944924 -91838548 + Tigger7 DNA MER2_type 453 1004 -1483 799 189 34 0 chr11 56944930 56945078 -91838394 + Tigger7 DNA MER2_type 2339 2491 0 7928 142 13 2 chr11 56945682 56947055 -91836417 + L1P LINE L1 1658 3045 -3101 1745 234 96 16 chr11 56947643 56948195 -91835277 - MER90 LTR ERV1 -3 611 16 3825 176 60 13 chr11 56949766 56950785 -91832687 + L1MA8 LINE L1 5142 6205 -86 226 263 42 11 chr11 56951170 56951265 -91832207 + HAL1 LINE L1 2243 2340 -167 738 271 62 41 chr11 56951274 56951614 -91831858 + L1ME3A LINE L1 5815 6161 -9 21 0 0 0 chr11 56952257 56952278 -91831194 + AT_rich Low_complexity Low_complexity 1 21 0 291 28 0 0 chr11 56953268 56953304 -91830168 + (TG)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr11 56953589 56953610 -91829862 + AT_rich Low_complexity Low_complexity 1 21 0 230 286 0 0 chr11 56953752 56953808 -91829664 + L2 LINE L2 3217 3272 0 1836 285 50 17 chr11 56954020 56954870 -91828602 - L1MEc LINE L1 -2659 3556 2560 876 202 34 29 chr11 56954870 56955078 -91828394 + MER6B DNA MER2_type 1 209 -1 1836 285 50 17 chr11 56955078 56955364 -91828108 - L1MEc LINE L1 -3655 2560 2285 225 304 76 0 chr11 56956279 56956358 -91827114 + L1 LINE L1 4092 4176 -1970 2532 166 8 19 chr11 56956363 56956832 -91826640 - L1MA5 LINE L1 -360 5940 5477 1775 237 32 51 chr11 56956985 56957729 -91825743 - L1M4 LINE L1 -2849 3297 2568 3574 195 17 34 chr11 56957730 56958575 -91824897 - L1MA10 LINE L1 -3 6331 5502 257 28 0 28 chr11 56958752 56958788 -91824684 - L1PBa LINE L1 -4143 2720 2686 4795 134 58 3 chr11 56958821 56959569 -91823903 - THE1B-int LTR MaLR -789 791 3 2271 120 0 6 chr11 56959572 56959898 -91823574 - THE1B LTR MaLR 0 364 41 7753 11 9 0 chr11 56960648 56962200 -91821272 + L1PA2 LINE L1 5175 6155 0 7049 38 20 1 chr11 56962200 56963179 -91820293 + L1PA3 LINE L1 5175 6169 0 541 167 25 17 chr11 56963280 56963400 -91820072 - L1MA4 LINE L1 -222 6078 5958 1916 178 40 68 chr11 56966223 56966632 -91816840 - L1MA10 LINE L1 0 6334 5942 498 90 26 0 chr11 56966632 56966710 -91816762 - MADE1 DNA Mariner 0 80 1 1916 178 40 68 chr11 56966710 56966827 -91816645 - L1MA10 LINE L1 -392 5942 5823 207 0 0 0 chr11 56967844 56967867 -91815605 + (T)n Simple_repeat Simple_repeat 1 23 0 1775 125 14 42 chr11 56970109 56970398 -91813074 + AluJb SINE Alu 2 282 -30 342 67 0 0 chr11 56970398 56970443 -91813029 + (TC)n Simple_repeat Simple_repeat 2 46 0 520 61 70 0 chr11 56970446 56970561 -91812911 + (TA)n Simple_repeat Simple_repeat 2 124 0 209 329 14 0 chr11 56970702 56970775 -91812697 + MIR SINE MIR 60 133 -75 2409 24 3 14 chr11 56970920 56971208 -91812264 - AluYa5 SINE Alu -26 285 1 818 262 68 27 chr11 56971567 56971903 -91811569 - L1ME3A LINE L1 -13 6157 5808 24 32 0 0 chr11 56972565 56972596 -91810876 + AT_rich Low_complexity Low_complexity 1 31 0 23 68 0 0 chr11 56972653 56972697 -91810775 + AT_rich Low_complexity Low_complexity 1 44 0 22 99 0 0 chr11 56973528 56973599 -91809873 + AT_rich Low_complexity Low_complexity 1 71 0 922 276 53 0 chr11 56974407 56974635 -91808837 - MIR SINE MIR -22 240 1 426 262 48 35 chr11 56974638 56974783 -91808689 + MIR SINE MIR 99 245 -17 2512 57 3 0 chr11 56974939 56975237 -91808235 + AluSc SINE Alu 2 300 -9 727 281 148 15 chr11 56975555 56976156 -91807316 + L1ME4a LINE L1 5404 6084 -37 303 329 82 24 chr11 56976258 56976428 -91807044 + MIR SINE MIR 25 204 -58 1949 72 4 4 chr11 56976684 56976935 -91806537 + AluSc SINE Alu 1 251 -58 314 61 20 0 chr11 56976948 56976997 -91806475 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 583 289 45 0 chr11 56977227 56977428 -91806044 - MARNA DNA Mariner -50 536 327 1419 137 11 1 chr11 56977860 56978113 -91805359 - L1ME3A LINE L1 -354 5824 5568 258 220 60 0 chr11 56978433 56978483 -91804989 + L2 LINE L2 3158 3210 -62 1048 213 102 100 chr11 56979371 56979886 -91803586 + MER66A LTR ERV1 97 448 -30 234 128 0 0 chr11 56980178 56980217 -91803255 + (GA)n Simple_repeat Simple_repeat 2 40 0 431 304 62 33 chr11 56980271 56980577 -91802895 + L1MB4 LINE L1 5738 6052 -128 * 1115 227 121 9 chr11 56980305 56980653 -91802819 + L1ME2 LINE L1 5770 6156 -8 207 0 0 0 chr11 56981474 56981497 -91801975 + (TTTA)n Simple_repeat Simple_repeat 4 26 0 2260 78 0 0 chr11 56981591 56981907 -91801565 + AluY SINE Alu 1 316 0 393 58 0 0 chr11 56982295 56982347 -91801125 + (GA)n Simple_repeat Simple_repeat 1 52 0 3188 221 39 9 chr11 56982582 56983348 -91800124 + MER99 DNA DNA 30 818 -10 389 253 8 11 chr11 56983940 56984048 -91799424 + L1MA8 LINE L1 5665 5777 -514 2378 161 29 0 chr11 56984049 56984503 -91798969 + L1MA8 LINE L1 5825 6291 0 3485 168 84 18 chr11 56984877 56985533 -91797939 + MER44D DNA MER2_type 7 705 0 1864 142 52 30 chr11 56985544 56985911 -91797561 - THE1C LTR MaLR 0 375 1 361 211 150 14 chr11 56986180 56986327 -91797145 - L1ME4a LINE L1 -5 6116 5950 2198 103 3 0 chr11 56986652 56986953 -91796519 - AluSg SINE Alu -4 306 5 186 255 64 0 chr11 56987469 56987516 -91795956 + L2 LINE L2 3205 3254 -18 301 326 21 43 chr11 56988191 56988332 -91795140 - L1M2 LINE L1 -5744 1105 968 1975 144 0 10 chr11 56989495 56989786 -91793686 + AluSx SINE Alu 1 288 -24 35 0 0 0 chr11 56989786 56989821 -91793651 + AT_rich Low_complexity Low_complexity 1 35 0 395 311 101 41 chr11 56989828 56990166 -91793306 + L1 LINE L1 2110 2467 -3679 313 296 81 24 chr11 56990182 56990429 -91793043 + L1 LINE L1 3679 3939 -2207 26 30 0 0 chr11 56990433 56990466 -91793006 + AT_rich Low_complexity Low_complexity 1 33 0 325 305 155 31 chr11 56990515 56990869 -91792603 + L1 LINE L1 4121 4518 -1628 26 64 0 0 chr11 56990950 56990997 -91792475 + AT_rich Low_complexity Low_complexity 1 47 0 1499 173 24 3 chr11 56991007 56991337 -91792135 - L1MA4 LINE L1 -6 6294 5958 180 111 0 0 chr11 56993678 56993705 -91789767 + (CAA)n Simple_repeat Simple_repeat 2 28 0 4716 169 40 9 chr11 56995521 56997203 -91786269 + L1MA6 LINE L1 4309 6023 -277 551 93 0 0 chr11 56997203 56997278 -91786194 - THE1B LTR MaLR -289 75 1 250 320 0 29 chr11 56997813 56997916 -91785556 + LTR16C LTR ERVL 388 487 -4 210 179 71 0 chr11 56998020 56998076 -91785396 + (TAGA)n Simple_repeat Simple_repeat 1 60 0 5619 167 44 7 chr11 56998133 57000075 -91783397 - L1MA6 LINE L1 -1 6299 4309 180 111 0 0 chr11 57001908 57001935 -91781537 + (TTG)n Simple_repeat Simple_repeat 2 28 0 960 157 20 0 chr11 57002357 57002554 -91780918 + L1MA4 LINE L1 6094 6294 -6 29 47 0 0 chr11 57002565 57002608 -91780864 + AT_rich Low_complexity Low_complexity 1 43 0 335 256 116 0 chr11 57002832 57002961 -91780511 + MER103 DNA DNA 3 146 -20 305 316 68 26 chr11 57003546 57003663 -91779809 + MIR3 SINE MIR 9 130 -78 811 255 109 97 chr11 57003794 57003997 -91779475 + MLT1G1 LTR MaLR 1 200 -395 1301 216 60 23 chr11 57003997 57004349 -91779123 + MLT1A1 LTR MaLR 1 365 0 811 255 109 97 chr11 57004349 57004733 -91778739 + MLT1G1 LTR MaLR 200 595 0 227 371 97 0 chr11 57005340 57005464 -91778008 - L2 LINE L2 -3 3269 3134 649 317 88 32 chr11 57005840 57006284 -91777188 - L2 LINE L2 -86 3227 2766 258 331 48 36 chr11 57006299 57006465 -91777007 - L2 LINE L2 -1101 2213 2046 1432 249 58 35 chr11 57006844 57007365 -91776107 + L1M4 LINE L1 3772 4304 -1842 3403 195 69 14 chr11 57007368 57008617 -91774855 + L1MA8 LINE L1 4774 6090 -201 235 214 0 0 chr11 57008603 57008659 -91774813 + L1MA9 LINE L1 6174 6229 -83 * 351 0 0 0 chr11 57008702 57008741 -91774731 + (TA)n Simple_repeat Simple_repeat 2 40 0 4380 149 61 17 chr11 57008786 57009133 -91774339 + L1MB1 LINE L1 5321 5651 -517 213 119 0 0 chr11 57009133 57009175 -91774297 + (TA)n Simple_repeat Simple_repeat 2 43 0 * 261 0 0 0 chr11 57009174 57009203 -91774269 + (TG)n Simple_repeat Simple_repeat 2 30 0 4380 149 61 17 chr11 57009175 57009298 -91774174 + L1MB1 LINE L1 5651 5767 -401 1838 131 28 72 chr11 57009298 57009523 -91773949 - MER2 DNA MER2_type 0 344 139 2917 9 0 0 chr11 57009523 57009840 -91773632 + AluYb8 SINE Alu 1 317 -1 1838 131 28 72 chr11 57009840 57009974 -91773498 - MER2 DNA MER2_type -205 139 1 4380 149 61 17 chr11 57009974 57010337 -91773135 + L1MB1 LINE L1 5767 6162 -6 2522 212 60 44 chr11 57010343 57011028 -91772444 + L1ME1 LINE L1 5467 6162 -4 599 260 19 56 chr11 57011597 57011852 -91771620 + MIR SINE MIR 4 246 -16 200 206 265 0 chr11 57012122 57012190 -91771282 + MIR SINE MIR 171 256 -6 196 307 208 0 chr11 57012186 57012287 -91771185 - MIR SINE MIR -121 141 20 * 594 286 32 28 chr11 57012835 57013052 -91770420 + MIR SINE MIR 34 251 -11 285 109 0 0 chr11 57013059 57013105 -91770367 + (TTA)n Simple_repeat Simple_repeat 2 47 0 284 260 110 110 chr11 57013236 57013382 -91770090 - L2 LINE L2 -5 3267 3122 890 266 62 16 chr11 57013435 57013743 -91769729 - L2 LINE L2 0 3313 2992 433 296 44 38 chr11 57014950 57015109 -91768363 + MIR SINE MIR 29 188 -74 314 209 93 0 chr11 57015825 57015911 -91767561 + MIR SINE MIR 42 135 -73 416 289 13 46 chr11 57016695 57016847 -91766625 - MER5A DNA MER1_type 0 189 43 672 256 42 0 chr11 57017187 57017355 -91766117 + MER5B DNA MER1_type 1 175 -3 438 223 5 109 chr11 57017426 57017536 -91765936 - MER103 DNA DNA -1 165 80 2039 78 17 27 chr11 57017536 57017830 -91765642 + L1PA13 LINE L1 5871 6161 -2 438 223 5 109 chr11 57017830 57017903 -91765569 - MER103 DNA DNA -86 80 1 425 170 0 40 chr11 57018369 57018469 -91765003 + L1MA7 LINE L1 6189 6284 -7 619 93 75 0 chr11 57018784 57018945 -91764527 + (TAGA)n Simple_repeat Simple_repeat 3 175 0 673 287 32 11 chr11 57018945 57019133 -91764339 - MIR SINE MIR -69 193 2 271 319 0 22 chr11 57019772 57019863 -91763609 - MIR3 SINE MIR -11 197 109 282 272 98 33 chr11 57020157 57020249 -91763223 - MIR3 SINE MIR -15 193 96 343 318 56 95 chr11 57021831 57022221 -91761251 + L2 LINE L2 2846 3220 -52 423 137 0 0 chr11 57022242 57022315 -91761157 + (GGAA)n Simple_repeat Simple_repeat 3 75 0 180 0 0 0 chr11 57023142 57023162 -91760310 + (T)n Simple_repeat Simple_repeat 1 20 0 249 264 28 47 chr11 57023370 57023476 -91759996 + MLT1K LTR MaLR 181 284 -304 391 358 57 5 chr11 57024332 57024525 -91758947 - L2 LINE L2 -614 2700 2498 1192 273 167 25 chr11 57024540 57025080 -91758392 + MLT1G1 LTR MaLR 14 584 -6 274 315 0 0 chr11 57025083 57025156 -91758316 - L2 LINE L2 -814 2500 2428 1140 180 0 57 chr11 57025159 57025409 -91758063 - AluJo SINE Alu 0 321 84 188 264 19 0 chr11 57025417 57025470 -91758002 - L2 LINE L2 -936 2378 2325 * 223 330 0 0 chr11 57025468 57025547 -91757925 + L2 LINE L2 2854 2926 -346 618 76 0 0 chr11 57025699 57025777 -91757695 - L1P LINE L1 -1964 4182 4102 1555 35 10 5 chr11 57025777 57025976 -91757496 + L1PA6 LINE L1 5953 6154 0 1962 121 43 0 chr11 57026270 57026552 -91756920 - AluSx SINE Alu -18 294 1 205 219 0 0 chr11 57027398 57027439 -91756033 - MIR SINE MIR 0 262 222 259 299 112 15 chr11 57027723 57027857 -91755615 - L2 LINE L2 -106 3207 3061 200 271 100 43 chr11 57027856 57027926 -91755546 + L2 LINE L2 2983 3056 -216 * 250 286 12 71 chr11 57029015 57029099 -91754373 - MIR SINE MIR -71 137 59 1369 249 103 19 chr11 57029516 57029934 -91753538 + L2 LINE L2 2859 3311 -2 279 383 4 79 chr11 57030190 57030430 -91753042 + L2 LINE L2 3046 3267 -5 274 293 17 26 chr11 57031250 57031366 -91752106 - L1ME LINE L1 -382 5739 5625 1156 198 12 31 chr11 57031588 57031845 -91751627 - L1PB4 LINE L1 -4 6152 5901 320 167 0 0 chr11 57031845 57031899 -91751573 + L1PB4 LINE L1 5840 5893 -263 23 0 0 0 chr11 57031900 57031923 -91751549 + AT_rich Low_complexity Low_complexity 1 23 0 1580 203 64 67 chr11 57032215 57032716 -91750756 - MLT1H LTR MaLR 0 567 41 317 272 133 63 chr11 57033770 57034185 -91749287 - HAL1 LINE L1 -888 1619 1176 2154 136 39 28 chr11 57035254 57035614 -91747858 + THE1B LTR MaLR 1 364 0 516 298 41 23 chr11 57037216 57037387 -91746085 - MIR SINE MIR -71 191 18 1852 87 45 10 chr11 57037406 57037694 -91745778 - L1MA3 LINE L1 -10 6295 5998 214 71 24 24 chr11 57037838 57037880 -91745592 + (TTTTA)n Simple_repeat Simple_repeat 1 42 0 3617 35 0 0 chr11 57037880 57038306 -91745166 - L1PA4 LINE L1 -24 6131 5706 513 272 13 0 chr11 57039201 57039359 -91744113 - MER103 DNA DNA -4 162 3 2085 138 0 0 chr11 57039544 57039848 -91743624 + AluSx SINE Alu 1 304 -8 725 272 11 0 chr11 57042049 57042229 -91741243 + MIR SINE MIR 43 224 -38 326 325 17 62 chr11 57042571 57042811 -91740661 - L2 LINE L2 -195 3077 2849 527 238 44 12 chr11 57042928 57043088 -91740384 + L1MA4 LINE L1 6104 6268 -32 345 361 5 37 chr11 57043097 57043288 -91740184 - L2 LINE L2 -555 2759 2575 277 307 119 23 chr11 57043473 57043649 -91739823 + MIR SINE MIR 50 242 -20 216 333 117 30 chr11 57043647 57043878 -91739594 + L2 LINE L2 2841 3091 -181 * 237 284 78 0 chr11 57044173 57044275 -91739197 - MER103 DNA DNA -54 112 3 263 343 60 55 chr11 57044372 57044572 -91738900 + MIR SINE MIR 18 216 -46 336 296 63 14 chr11 57045477 57045619 -91737853 + MIR3 SINE MIR 49 197 -11 5673 164 22 8 chr11 57045644 57047447 -91736025 - L1MA4 LINE L1 -11 7708 5876 8021 184 26 29 chr11 57049157 57050159 -91733313 - L1MA4 LINE L1 -1679 5886 4888 342 0 0 0 chr11 57050159 57050197 -91733275 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 8021 184 26 29 chr11 57050197 57051045 -91732427 - L1MA4 LINE L1 -2677 4888 4040 3057 135 31 0 chr11 57051045 57051498 -91731974 + Charlie3 DNA MER1_type 1 467 -2243 857 151 8 0 chr11 57051498 57051624 -91731848 + Charlie3 DNA MER1_type 2576 2702 -8 1527 199 77 58 chr11 57051644 57052387 -91731085 - L1MA4 LINE L1 -3579 3986 3222 1568 214 0 3 chr11 57052387 57052682 -91730790 - AluJo SINE Alu -14 298 5 1527 199 77 58 chr11 57052682 57052791 -91730681 - L1MA4 LINE L1 -4343 3222 3117 1489 188 0 0 chr11 57052790 57053078 -91730394 + L1P LINE L1 4666 4953 -1193 * 2528 58 28 0 chr11 57053181 57053541 -91729931 - L1P LINE L1 -993 5153 4784 * 6347 166 16 55 chr11 57053529 57055154 -91728318 - L1M1 LINE L1 -743 5403 3931 311 284 21 11 chr11 57055156 57055251 -91728221 + L1MDa LINE L1 1774 1869 -4671 495 235 176 24 chr11 57055298 57055638 -91727834 + L1MDa LINE L1 2161 2552 -4169 924 298 105 6 chr11 57055660 57056165 -91727307 + L1MDa LINE L1 2595 3147 -3393 494 155 0 72 chr11 57056421 57056518 -91726954 - Tigger7 DNA MER2_type 0 2487 2398 * 1191 233 4 17 chr11 57056516 57056752 -91726720 - Tigger7 DNA MER2_type -471 234 2 2078 115 0 14 chr11 57056997 57057321 -91726151 - AluSg SINE Alu 0 320 1 826 325 63 37 chr11 57057363 57057855 -91725617 + LTR33 LTR ERVL 1 505 -16 552 40 67 0 chr11 57059463 57059538 -91723934 + MADE1 DNA Mariner 1 80 0 435 290 93 32 chr11 57060400 57060622 -91722850 + MIR SINE MIR 25 262 0 194 295 89 62 chr11 57060628 57060740 -91722732 + L2 LINE L2 3197 3311 -2 611 130 139 0 chr11 57061070 57061185 -91722287 - L1MA7 LINE L1 0 6291 6161 25 0 0 0 chr11 57061229 57061254 -91722218 + AT_rich Low_complexity Low_complexity 1 25 0 358 341 138 15 chr11 57061371 57061519 -91721953 - L3 LINE CR1 -124 1453 1325 2023 106 37 4 chr11 57061519 57061911 -91721561 - AluSq SINE Alu 0 401 1 358 341 138 15 chr11 57061911 57062086 -91721386 - L3 LINE CR1 -252 1325 1089 227 309 25 0 chr11 57062204 57062285 -91721187 - L3 LINE CR1 -913 664 582 341 291 14 21 chr11 57062557 57062698 -91720774 + MIR SINE MIR 120 259 -3 186 323 121 20 chr11 57062689 57062788 -91720684 + MIR SINE MIR 104 212 -50 * 26 30 0 0 chr11 57063800 57063833 -91719639 + AT_rich Low_complexity Low_complexity 1 33 0 321 47 0 0 chr11 57063923 57063966 -91719506 + (TG)n Simple_repeat Simple_repeat 1 43 0 217 333 0 0 chr11 57064162 57064234 -91719238 - MIR SINE MIR -46 216 145 188 281 105 0 chr11 57064240 57064297 -91719175 - MIR SINE MIR -61 201 139 317 289 13 31 chr11 57064420 57064579 -91718893 - L1ME3A LINE L1 -4 6166 6011 294 260 55 0 chr11 57064644 57064717 -91718755 - L1MC4 LINE L1 -1064 6978 6902 390 382 18 18 chr11 57064863 57065083 -91718389 + L2 LINE L2 2866 3085 -187 505 224 14 56 chr11 57065312 57065455 -91718017 - MER20 DNA MER1_type -82 137 1 1845 118 35 131 chr11 57066298 57066704 -91716768 - MLT1B LTR MaLR 0 390 24 231 256 13 13 chr11 57068342 57068420 -91715052 + (TA)n Simple_repeat Simple_repeat 1 78 0 6647 74 24 1 chr11 57068497 57069919 -91713553 - L1PA7 LINE L1 -7 6147 4707 1992 134 0 11 chr11 57070035 57070319 -91713153 - AluJb SINE Alu -31 281 1 259 160 0 40 chr11 57070333 57070383 -91713089 + MLT2C2 LTR ERVL 372 419 -45 1713 189 7 3 chr11 57071707 57072004 -91711468 - AluJo SINE Alu -14 298 1 1322 191 42 19 chr11 57072145 57072454 -91711018 + L1MA9 LINE L1 5959 6274 -38 1500 99 0 0 chr11 57073198 57073389 -91710083 + AluSc SINE Alu 103 293 -16 26 74 0 0 chr11 57074624 57074678 -91708794 + AT_rich Low_complexity Low_complexity 1 54 0 24 85 0 0 chr11 57075183 57075242 -91708230 + AT_rich Low_complexity Low_complexity 1 59 0 480 288 193 9 chr11 57075340 57075552 -91707920 + MIR SINE MIR 1 251 -11 2021 42 0 0 chr11 57076274 57076515 -91706957 - L1PA3 LINE L1 -5 6150 5910 1517 132 26 58 chr11 57076515 57076826 -91706646 - L1MB2 LINE L1 -2 6169 5869 206 295 54 54 chr11 57076917 57077029 -91706443 + L2 LINE L2 2949 3060 -212 2345 94 3 0 chr11 57077259 57077556 -91705916 + AluSg SINE Alu 1 298 -12 720 111 0 0 chr11 57077688 57077805 -91705667 + (TAGA)n Simple_repeat Simple_repeat 4 120 0 350 176 82 0 chr11 57077845 57077930 -91705542 - MER103 DNA DNA -3 163 72 607 316 21 11 chr11 57078093 57078283 -91705189 - MIR SINE MIR -38 224 33 399 259 49 89 chr11 57078426 57078650 -91704822 - MER58C DNA MER1_type 0 215 1 2041 88 4 4 chr11 57079006 57079279 -91704193 + AluSx SINE Alu 1 273 -39 2286 93 3 0 chr11 57079296 57079597 -91703875 + AluSc SINE Alu 1 302 -7 1677 0 0 0 chr11 57079727 57079914 -91703558 - L1PA3 LINE L1 -188 5967 5781 780 30 0 30 chr11 57079914 57080001 -91703471 + L1PA3 LINE L1 6058 6154 -1 458 237 34 8 chr11 57081065 57081183 -91702289 + MER5C DNA MER1_type 4 124 -200 3684 65 4 4 chr11 57081459 57081949 -91701523 - L1PA8 LINE L1 -4 6168 5679 428 77 0 15 chr11 57081949 57082014 -91701458 + L1PA8 LINE L1 5606 5669 -497 23 0 0 0 chr11 57082049 57082072 -91701400 + AT_rich Low_complexity Low_complexity 1 23 0 939 240 107 30 chr11 57082113 57082873 -91700599 - L1ME2 LINE L1 -6 6158 5254 17384 36 8 2 chr11 57082920 57085866 -91697606 - L1PA4 LINE L1 0 6155 3230 24783 133 19 77 chr11 57085966 57090937 -91692535 - L1P LINE L1 -1451 4695 12 3272 186 23 4 chr11 57091064 57091759 -91691713 + L1 LINE L1 4623 5330 -816 4503 173 60 0 chr11 57091775 57093491 -91689981 + L1PBa LINE L1 6 1997 -4866 2012 153 97 0 chr11 57093622 57093994 -91689478 + L1PB4 LINE L1 1467 1874 -4975 4346 133 26 0 chr11 57093994 57094698 -91688774 + L1PB4 LINE L1 6137 6858 -1 1199 139 15 5 chr11 57094929 57095130 -91688342 + MSTA LTR MaLR 1 203 -225 577 303 132 36 chr11 57095779 57096135 -91687337 - L2 LINE L2 -33 3280 2891 1287 172 16 26 chr11 57096203 57096512 -91686960 + L1MA7 LINE L1 5698 6223 -68 2594 174 52 14 chr11 57096512 57097012 -91686460 + MER44D DNA MER2_type 1 574 -31 2457 162 17 9 chr11 57097113 57097575 -91685897 - L1P LINE L1 -995 5151 4686 12588 222 59 37 chr11 57097575 57098128 -91685344 - L1PA13 LINE L1 -752 6045 5505 180 0 0 0 chr11 57098128 57098148 -91685324 + (TG)n Simple_repeat Simple_repeat 2 21 0 12588 222 59 37 chr11 57098148 57100256 -91683216 - L1PA13 LINE L1 -1292 5505 3444 207 0 0 0 chr11 57100256 57100279 -91683193 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 771 168 0 0 chr11 57100279 57100398 -91683074 - AluJb SINE Alu -193 119 1 12588 222 59 37 chr11 57100398 57101789 -91681683 - L1PA13 LINE L1 -3352 3445 1776 7300 230 64 35 chr11 57101817 57104242 -91679230 - L1 LINE L1 -2107 4275 1758 2256 103 0 10 chr11 57104242 57104553 -91678919 - AluSx SINE Alu 0 312 5 7300 230 64 35 chr11 57104553 57105414 -91678058 - L1 LINE L1 -4624 1758 923 576 267 82 47 chr11 57105418 57105736 -91677736 + MER88 LTR ERVL 6 334 -130 507 231 15 13 chr11 57105884 57106049 -91677423 - L1M2c LINE L1 -5032 2059 1903 746 266 44 55 chr11 57106062 57106355 -91677117 - L1M2c LINE L1 -5850 1248 959 250 354 35 7 chr11 57106633 57106777 -91676695 + MIR SINE MIR 96 243 -19 317 225 33 40 chr11 57107610 57107761 -91675711 - L1M4 LINE L1 -5218 1324 1175 877 273 90 34 chr11 57107768 57108176 -91675296 + L1M4 LINE L1 4457 4896 -1250 1355 206 88 29 chr11 57108176 57108550 -91674922 + MSTD LTR MaLR 1 396 0 877 273 90 34 chr11 57108550 57108606 -91674866 + L1M4 LINE L1 4896 4947 -1199 676 264 51 66 chr11 57108858 57109191 -91674281 + L1MC3 LINE L1 6382 6709 -1076 349 216 0 14 chr11 57109260 57109334 -91674138 + MLT1F1 LTR MaLR 53 125 -442 1313 247 83 7 chr11 57109342 57109799 -91673673 + L1MC3 LINE L1 7200 7691 -94 300 208 73 2 chr11 57109830 57109925 -91673547 - MLT1E3 LTR MaLR -16 608 451 866 241 146 39 chr11 57110668 57111099 -91672373 - L2 LINE L2 -2 3311 2835 3388 204 17 5 chr11 57111290 57112069 -91671403 - L1PA16 LINE L1 -1650 4496 3709 * 5507 164 30 27 chr11 57112068 57113747 -91669725 + L1PA16 LINE L1 4497 6166 0 201 346 47 0 chr11 57115558 57115665 -91667807 - MIR3 SINE MIR -5 203 92 314 309 101 7 chr11 57115764 57115913 -91667559 - MIR SINE MIR -56 206 44 217 345 12 0 chr11 57116226 57116310 -91667162 + MIR SINE MIR 122 206 -56 20821 52 2 3 chr11 57117663 57120313 -91663159 - L1P LINE L1 -2876 3270 623 777 73 0 0 chr11 57120313 57120409 -91663063 - L1P LINE L1 -6050 96 1 16135 128 5 11 chr11 57120419 57122863 -91660609 - HERV9 LTR ERV1 -5915 2484 55 634 137 84 76 chr11 57122846 57122977 -91660495 - pTR5 LTR ERV1 -2001 437 306 * 304 252 58 0 chr11 57122978 57123081 -91660391 - LTR30 LTR ERV1 -70 652 544 1619 124 3 101 chr11 57123081 57123388 -91660084 - LTR12 LTR ERV1 -437 277 1 2666 90 0 8 chr11 57123389 57123745 -91659727 - THE1B LTR MaLR -11 353 1 521 318 74 0 chr11 57123916 57124158 -91659314 - HAL1 LINE L1 -854 1653 1394 182 366 56 0 chr11 57125886 57125957 -91657515 + L3 LINE CR1 74 148 -1429 2352 81 0 10 chr11 57126031 57126358 -91657114 - AluSc SINE Alu 0 309 1 428 245 9 0 chr11 57126756 57126862 -91656610 - MIR SINE MIR -50 212 106 278 296 0 28 chr11 57127004 57127112 -91656360 + (TTCA)n Simple_repeat Simple_repeat 3 107 0 242 339 42 17 chr11 57127787 57127905 -91655567 + MER5A DNA MER1_type 64 184 -5 5521 124 35 1 chr11 57130848 57131895 -91651577 + L1PA13 LINE L1 5084 6157 -6 1584 260 63 33 chr11 57131896 57132690 -91650782 + L1MB7 LINE L1 2371 3127 -4438 5832 113 19 24 chr11 57132701 57134087 -91649385 - L1PA13 LINE L1 -12 6151 4768 401 364 7 7 chr11 57134367 57134518 -91648954 - L2 LINE L2 -1095 2219 2069 669 316 146 13 chr11 57134539 57134840 -91648632 + L2 LINE L2 2205 2545 -769 501 252 0 0 chr11 57134847 57134954 -91648518 + MER2 DNA MER2_type 1 107 -238 6941 141 16 6 chr11 57134965 57137235 -91646237 - L1MA1 LINE L1 -2 6300 4004 4741 131 17 2 chr11 57137244 57138071 -91645401 - L1PB4 LINE L1 -121 6035 5197 1152 258 11 39 chr11 57138062 57138426 -91645046 - L1PA15-16 LINE L1 -3935 2914 2561 * 4365 107 3 18 chr11 57138538 57139199 -91644273 + L1PA13 LINE L1 5512 6162 -1 3278 241 32 20 chr11 57139200 57140525 -91642947 + L1MB7 LINE L1 4303 5824 -1741 3489 221 26 22 chr11 57140569 57140756 -91642716 + L1MB7 LINE L1 6673 6858 -745 1676 187 11 3 chr11 57140756 57141039 -91642433 + AluJo SINE Alu 11 295 -17 3489 221 26 22 chr11 57141039 57141768 -91641704 + L1MB7 LINE L1 6858 7593 -10 3648 195 56 28 chr11 57141781 57142979 -91640493 + L1MB8 LINE L1 4948 6173 -5 305 309 101 60 chr11 57143119 57143455 -91640017 - MLT1J1 LTR MaLR -29 417 68 563 316 41 41 chr11 57143546 57143790 -91639682 - MIR SINE MIR -17 245 2 180 0 0 0 chr11 57144490 57144510 -91638962 + (A)n Simple_repeat Simple_repeat 1 20 0 331 389 23 14 chr11 57144986 57145202 -91638270 - MIR SINE MIR -41 221 4 293 354 10 10 chr11 57145370 57145466 -91638006 + MIR SINE MIR 17 112 -150 186 43 0 0 chr11 57145506 57145529 -91637943 + (TG)n Simple_repeat Simple_repeat 1 23 0 25 31 0 0 chr11 57147298 57147330 -91636142 + AT_rich Low_complexity Low_complexity 1 32 0 1387 147 43 9 chr11 57147429 57147661 -91635811 + THE1C LTR MaLR 1 240 -135 644 258 89 40 chr11 57147703 57148029 -91635443 + L1ME1 LINE L1 5823 6164 -2 381 356 68 6 chr11 57148735 57148912 -91634560 - MIR SINE MIR -61 201 14 246 266 0 0 chr11 57149469 57149533 -91633939 + MIR SINE MIR 85 148 -114 1091 203 124 57 chr11 57150057 57150531 -91632941 - L1ME1 LINE L1 -8 6158 5653 5802 158 47 19 chr11 57151456 57152598 -91630874 + Ricksha_a DNA DNA 1 1174 -7 473 163 93 0 chr11 57152606 57152692 -91630780 - U3 snRNA snRNA -121 96 3 327 282 128 19 chr11 57152693 57152849 -91630623 - L1M4 LINE L1 -2699 3447 3275 1637 134 24 0 chr11 57152968 57153222 -91630250 + L1PB3 LINE L1 5889 6148 -6 27 29 0 0 chr11 57153223 57153257 -91630215 + AT_rich Low_complexity Low_complexity 1 34 0 26 0 0 0 chr11 57153285 57153311 -91630161 + AT_rich Low_complexity Low_complexity 1 26 0 268 299 13 13 chr11 57153563 57153640 -91629832 - MER2 DNA MER2_type -1 344 268 309 159 58 0 chr11 57153647 57153716 -91629756 + L1 LINE L1 5208 5280 -866 355 325 121 6 chr11 57153723 57153880 -91629592 - L2 LINE L2 -289 3024 2850 492 229 6 11 chr11 57153916 57154095 -91629377 + (ATG)n Simple_repeat Simple_repeat 2 179 0 714 254 6 0 chr11 57154115 57154280 -91629192 - MIR SINE MIR -57 205 40 797 292 26 46 chr11 57154321 57154626 -91628846 - L2 LINE L2 -414 2900 2602 228 226 16 0 chr11 57154691 57154753 -91628719 + L1 LINE L1 5188 5250 -896 517 378 30 16 chr11 57154753 57155377 -91628095 + L1M2b LINE L1 31 1960 -5249 529 336 11 40 chr11 57155432 57155706 -91627766 + L1PBb LINE L1 699 964 -5886 2737 234 49 26 chr11 57155945 57156766 -91626706 + L1PBb LINE L1 1718 2557 -4292 3277 180 52 2 chr11 57156883 57157523 -91625949 - L1MA5 LINE L1 -36 6264 5593 3124 190 11 6 chr11 57157526 57158174 -91625298 - L1MA5 LINE L1 -1 6299 5649 1902 268 16 20 chr11 57158276 57158776 -91624696 - ERVL LTR ERVL -5095 669 172 495 182 27 8 chr11 57158785 57158919 -91624553 - MLT2D LTR ERVL -260 154 20 2139 124 0 0 chr11 57159024 57159315 -91624157 + AluSx SINE Alu 1 291 -21 501 221 0 0 chr11 57159419 57159514 -91623958 - L1MA5 LINE L1 -709 5591 5497 7031 47 27 0 chr11 57159515 57160474 -91622998 - L1PA5 LINE L1 -1 6153 5176 210 37 0 0 chr11 57160769 57160796 -91622676 + (CATA)n Simple_repeat Simple_repeat 2 28 0 2512 235 48 11 chr11 57160889 57161684 -91621788 - L1M4 LINE L1 -1090 5056 4233 1943 132 3 7 chr11 57161685 57161972 -91621500 - AluSx SINE Alu -24 288 3 263 339 25 17 chr11 57163582 57163700 -91619772 - MIR3 SINE MIR -5 203 85 398 331 28 33 chr11 57163777 57163958 -91619514 - MIR SINE MIR -48 214 35 23 92 0 0 chr11 57163963 57164028 -91619444 + AT_rich Low_complexity Low_complexity 1 65 0 409 304 41 36 chr11 57164171 57164365 -91619107 + MIR SINE MIR 5 199 -63 495 259 63 51 chr11 57165060 57165218 -91618254 - MLT1D LTR MaLR -345 160 1 223 248 39 78 chr11 57165237 57165366 -91618106 - MIR3 SINE MIR -2 206 83 226 340 40 20 chr11 57165568 57165668 -91617804 - MIR SINE MIR -148 114 13 243 359 19 9 chr11 57166357 57166463 -91617009 + MIR SINE MIR 46 152 -110 289 331 102 12 chr11 57167510 57167676 -91615796 + LTR16C LTR ERVL 203 383 -108 4798 31 0 26 chr11 57167676 57168281 -91615191 - L1PA4 LINE L1 -202 5953 5365 489 55 82 0 chr11 57168277 57168350 -91615122 + L1PA5 LINE L1 5977 6055 -99 * 2010 176 77 42 chr11 57168345 57168831 -91614641 - L1MD1 LINE L1 -154 6088 5582 230 51 51 0 chr11 57168831 57168870 -91614602 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 2010 176 77 42 chr11 57168870 57168889 -91614583 - L1MD1 LINE L1 -660 5582 5565 419 248 33 7 chr11 57168908 57169061 -91614411 - L1M4 LINE L1 -5211 1331 1175 504 263 138 26 chr11 57169067 57169413 -91614059 + L1MB5 LINE L1 4456 4850 -1296 726 106 0 0 chr11 57169413 57169526 -91613946 + MER2 DNA MER2_type 97 209 -136 25 83 0 0 chr11 57169698 57169758 -91613714 + AT_rich Low_complexity Low_complexity 1 60 0 192 77 0 0 chr11 57171443 57171469 -91612003 + (CA)n Simple_repeat Simple_repeat 2 27 0 383 308 121 6 chr11 57171515 57171697 -91611775 - MIR SINE MIR -29 233 31 426 319 110 11 chr11 57171892 57172083 -91611389 + MIR SINE MIR 13 222 -40 28 0 0 0 chr11 57172540 57172568 -91610904 + AT_rich Low_complexity Low_complexity 1 28 0 289 355 26 26 chr11 57172768 57172920 -91610552 - MIR SINE MIR -94 168 17 2007 130 3 3 chr11 57173026 57173319 -91610153 - AluSx SINE Alu -17 295 3 1323 286 95 2 chr11 57174467 57175057 -91608415 - L1ME1 LINE L1 -49 6117 5473 13236 28 0 0 chr11 57175220 57177557 -91605915 + L1PA3 LINE L1 3815 6152 -3 243 305 86 33 chr11 57177777 57177928 -91605544 + MIR SINE MIR 91 249 -13 31 0 0 0 chr11 57177931 57177962 -91605510 + AT_rich Low_complexity Low_complexity 1 31 0 615 232 50 17 chr11 57178316 57178497 -91604975 + MLT1D LTR MaLR 8 194 -311 4266 74 28 0 chr11 57178539 57179105 -91604367 + L1PA7 LINE L1 5572 6153 -1 190 125 42 21 chr11 57179112 57179160 -91604312 + GA-rich Low_complexity Low_complexity 2 50 0 328 182 45 0 chr11 57179168 57179234 -91604238 + L1MA9 LINE L1 6157 6225 -87 581 240 61 5 chr11 57179294 57179490 -91603982 + L1MB5 LINE L1 4937 5143 -1003 13113 224 41 20 chr11 57179491 57180042 -91603430 + L1MA5 LINE L1 9 547 -6395 249 139 0 0 chr11 57180042 57180078 -91603394 - U2 snRNA snRNA -152 36 1 13113 224 41 20 chr11 57180078 57183232 -91600240 + L1MA5 LINE L1 547 3635 -3307 2727 136 35 7 chr11 57183232 57183689 -91599783 + L1PA16 LINE L1 5694 6163 -3 13113 224 41 20 chr11 57183689 57186362 -91597110 + L1MA5 LINE L1 3635 6936 -6 26 64 0 0 chr11 57186395 57186442 -91597030 + AT_rich Low_complexity Low_complexity 1 47 0 537 298 32 6 chr11 57186500 57186658 -91596814 + MIR SINE MIR 63 224 -38 989 265 51 27 chr11 57186690 57187326 -91596146 + L1PB4 LINE L1 5127 5906 -250 * 2969 235 24 15 chr11 57186797 57187590 -91595882 + L1MB5 LINE L1 5375 6174 0 835 233 87 11 chr11 57187599 57187879 -91595593 + MLT1D LTR MaLR 175 505 0 335 282 101 43 chr11 57188014 57188223 -91595249 - L2 LINE L2 0 3313 3093 282 288 179 33 chr11 57188464 57188676 -91594796 - MIR SINE MIR 0 262 20 527 280 136 18 chr11 57188843 57189240 -91594232 - MLT1J1 LTR MaLR 0 446 3 369 43 0 0 chr11 57189498 57189545 -91593927 + (CA)n Simple_repeat Simple_repeat 2 48 0 39 0 0 0 chr11 57190072 57190111 -91593361 + AT_rich Low_complexity Low_complexity 1 39 0 7390 31 0 0 chr11 57190111 57190985 -91592487 - L1PA3 LINE L1 -3 6152 5279 518 85 0 37 chr11 57190987 57191069 -91592403 - L1PA8 LINE L1 -3 6169 6091 263 278 0 0 chr11 57191347 57191401 -91592071 - L2 LINE L2 -349 2964 2911 30 0 0 0 chr11 57191773 57191803 -91591669 + AT_rich Low_complexity Low_complexity 1 30 0 193 250 18 36 chr11 57193039 57193095 -91590377 - MIR SINE MIR -136 126 72 331 325 80 25 chr11 57193141 57193304 -91590168 - MIR SINE MIR -43 219 48 350 372 21 16 chr11 57193521 57193712 -91589760 + MIR SINE MIR 19 210 -52 4553 101 193 129 chr11 57194130 57195458 -91588014 - pTR5 LTR ERV1 0 2438 741 904 184 13 0 chr11 57195691 57195849 -91587623 - MLT1D LTR MaLR -345 160 1 192 331 48 41 chr11 57196265 57196410 -91587062 - MIR SINE MIR -110 152 7 3100 189 17 11 chr11 57196821 57197460 -91586012 - MER44D DNA MER2_type -2 603 1 216 347 27 80 chr11 57197650 57197800 -91585672 + MIR SINE MIR 34 175 -87 22 0 0 0 chr11 57198686 57198708 -91584764 + AT_rich Low_complexity Low_complexity 1 22 0 562 299 96 14 chr11 57198774 57199055 -91584417 + LTR16C LTR ERVL 173 476 -15 338 305 79 16 chr11 57199323 57199513 -91583959 - HAL1 LINE L1 -856 1651 1450 820 243 68 57 chr11 57199643 57199939 -91583533 - L1M2 LINE L1 -5840 1009 711 427 178 0 89 chr11 57199946 57200047 -91583425 - L1M2 LINE L1 -6222 627 536 1059 266 85 37 chr11 57200053 57200569 -91582903 + L1MC3 LINE L1 5875 6415 -1370 1499 146 68 84 chr11 57200600 57200970 -91582502 - MER39 LTR ERV1 -2 705 342 1601 139 0 11 chr11 57200975 57201249 -91582223 - L1PA13 LINE L1 -4 6159 5889 2286 183 24 0 chr11 57201249 57201718 -91581754 + L1P LINE L1 4907 5386 -760 1768 157 44 0 chr11 57201727 57202020 -91581452 - MER39 LTR ERV1 -401 306 1 878 246 68 11 chr11 57202020 57202301 -91581171 + L1MC3 LINE L1 6540 6836 -949 1381 236 115 32 chr11 57202303 57202905 -91580567 + L1MC3 LINE L1 7023 7674 -111 875 287 110 35 chr11 57202934 57203369 -91580103 - MLT1D LTR MaLR 0 505 38 191 323 31 0 chr11 57203871 57203936 -91579536 - L2 LINE L2 0 3313 3247 205 50 25 25 chr11 57203936 57203976 -91579496 + (TTTTA)n Simple_repeat Simple_repeat 2 41 0 705 268 137 21 chr11 57205115 57205444 -91578028 - L2 LINE L2 -83 3230 2864 22 35 0 0 chr11 57205777 57205806 -91577666 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr11 57205877 57205912 -91577560 + AT_rich Low_complexity Low_complexity 1 35 0 2527 157 78 31 chr11 57205913 57205942 -91577530 - MLT2B2 LTR ERVL 0 515 489 544 38 25 0 chr11 57205942 57206021 -91577451 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 2527 157 78 31 chr11 57206021 57206481 -91576991 - MLT2B2 LTR ERVL -26 489 3 180 372 31 23 chr11 57208003 57208132 -91575340 - MIR3 SINE MIR -1 207 78 315 345 96 10 chr11 57208185 57208382 -91575090 - MIR SINE MIR -26 236 23 281 309 52 29 chr11 57208703 57208839 -91574633 + MIR SINE MIR 124 262 0 22 56 0 0 chr11 57209284 57209320 -91574152 + AT_rich Low_complexity Low_complexity 1 36 0 2023 145 34 0 chr11 57209320 57209672 -91573800 - L1PA16 LINE L1 -9 6157 5794 3281 88 16 4 chr11 57209689 57210173 -91573299 + L1PA11 LINE L1 5612 6153 -20 946 120 13 25 chr11 57210189 57210347 -91573125 + L1PA16 LINE L1 5675 5830 -336 216 158 0 0 chr11 57210567 57210605 -91572867 + (TG)n Simple_repeat Simple_repeat 1 38 0 1407 274 65 43 chr11 57211964 57212430 -91571042 - L1ME1 LINE L1 -8 6158 5671 1884 122 0 59 chr11 57212430 57212734 -91570738 + AluSx SINE Alu 6 291 -21 1407 274 65 43 chr11 57212734 57212943 -91570529 - L1ME1 LINE L1 -495 5671 5468 33 0 0 0 chr11 57213380 57213413 -91570059 + AT_rich Low_complexity Low_complexity 1 33 0 513 270 60 11 chr11 57213737 57213922 -91569550 + MLT1D LTR MaLR 1 194 -311 346 277 0 0 chr11 57213957 57214069 -91569403 + L1M4 LINE L1 49 160 -6382 1412 235 56 34 chr11 57214087 57214654 -91568818 + L1M4 LINE L1 833 1412 -5130 510 125 0 0 chr11 57214656 57214736 -91568736 + (TTCC)n Simple_repeat Simple_repeat 1 80 0 1507 205 3 22 chr11 57214736 57215048 -91568424 - AluJb SINE Alu -6 306 1 1130 278 47 25 chr11 57215049 57215581 -91567891 + L1M4 LINE L1 1400 1937 -4709 1845 175 30 55 chr11 57215581 57215947 -91567525 + MSTC LTR MaLR 72 428 0 8050 219 45 37 chr11 57215952 57216092 -91567380 - L1 LINE L1 -743 5403 5266 1425 202 61 4 chr11 57216092 57216369 -91567103 - AluJo SINE Alu -19 293 1 8050 219 45 37 chr11 57216369 57218105 -91565367 - L1 LINE L1 -880 5266 3502 15224 37 6 0 chr11 57218105 57220717 -91562755 + L1PA5 LINE L1 3532 6149 -5 8050 219 45 37 chr11 57220717 57221297 -91562175 - L1 LINE L1 -2644 3502 2928 504 181 0 0 chr11 57221318 57221423 -91562049 - L1MA5 LINE L1 0 6300 6196 5002 167 18 8 chr11 57221434 57222786 -91560686 + L1MA6 LINE L1 3287 4625 -1675 3148 132 45 4 chr11 57222786 57223277 -91560195 + MER9 LTR ERVK 1 511 0 5002 167 18 8 chr11 57223277 57224755 -91558717 + L1MA6 LINE L1 4625 6293 -7 1845 158 6 28 chr11 57224755 57225113 -91558359 + L1MB1 LINE L1 5815 6168 0 256 358 83 37 chr11 57225224 57225442 -91558030 - L2 LINE L2 -339 2975 2748 192 309 15 0 chr11 57225442 57225510 -91557962 - L2 LINE L2 -934 2380 2312 3655 155 22 2 chr11 57225649 57226280 -91557192 + L1MC1 LINE L1 5690 6333 0 27 0 0 0 chr11 57226585 57226612 -91556860 + AT_rich Low_complexity Low_complexity 1 27 0 281 327 123 14 chr11 57228035 57228246 -91555226 - MIR SINE MIR -11 251 18 328 341 44 7 chr11 57228465 57228600 -91554872 + MIR SINE MIR 62 201 -61 255 358 25 62 chr11 57229302 57229464 -91554008 - MIR SINE MIR -94 168 13 205 278 19 0 chr11 57230132 57230186 -91553286 - MIR SINE MIR -23 239 185 201 74 0 0 chr11 57230458 57230485 -91552987 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 180 323 32 16 chr11 57230496 57230558 -91552914 - L2 LINE L2 -2 3311 3249 1302 104 20 10 chr11 57230585 57230787 -91552685 - L1PA13 LINE L1 0 6163 5960 614 324 61 48 chr11 57231936 57232545 -91550927 + L1PA15-16 LINE L1 2 618 -6231 10508 216 38 63 chr11 57232775 57238255 -91545217 + L1MA4A LINE L1 780 6640 -365 797 150 8 0 chr11 57238372 57238505 -91544967 - L1MB1 LINE L1 -240 5928 5795 231 188 0 0 chr11 57238559 57238607 -91544865 + GA-rich Low_complexity Low_complexity 2 49 0 23 0 0 0 chr11 57238659 57238682 -91544790 + AT_rich Low_complexity Low_complexity 1 23 0 751 285 84 11 chr11 57239030 57239293 -91544179 + LTR33 LTR ERVL 14 295 -226 2497 160 36 20 chr11 57239628 57240123 -91543349 - L1MA7 LINE L1 -5 6286 5784 641 181 47 27 chr11 57240123 57240272 -91543200 + L1M2 LINE L1 5470 5621 -670 287 378 96 24 chr11 57240798 57241007 -91542465 - MIR SINE MIR -31 231 8 33 0 0 0 chr11 57241041 57241074 -91542398 + AT_rich Low_complexity Low_complexity 1 33 0 630 92 0 0 chr11 57241170 57241257 -91542215 - L1MA4 LINE L1 -50 6250 6164 30 77 0 0 chr11 57242202 57242267 -91541205 + AT_rich Low_complexity Low_complexity 1 65 0 960 197 64 15 chr11 57242398 57243016 -91540456 - L1MB7 LINE L1 -1 6183 5431 903 165 53 16 chr11 57243011 57243199 -91540273 - L1MB7 LINE L1 -1400 4746 4552 * 456 255 9 0 chr11 57243244 57243350 -91540122 - L1M4 LINE L1 -5817 725 619 2026 198 100 15 chr11 57243419 57243464 -91540008 - MLT2B1 LTR ERVL 0 520 480 551 53 13 0 chr11 57243464 57243539 -91539933 + (TCTA)n Simple_repeat Simple_repeat 1 76 0 2026 198 100 15 chr11 57243539 57243972 -91539500 - MLT2B1 LTR ERVL -40 480 1 10276 165 51 4 chr11 57243972 57245764 -91537708 - ERVL-B1 LTR ERVL -7 5757 3882 * 17445 201 39 27 chr11 57245762 57249211 -91534261 - ERVL-B1 LTR ERVL -2058 3706 299 1765 47 0 4 chr11 57249211 57249443 -91534029 + L1PA3 LINE L1 5925 6155 0 17445 201 39 27 chr11 57249443 57249459 -91534013 - ERVL-B1 LTR ERVL -5465 299 285 1843 170 0 7 chr11 57249459 57249787 -91533685 + AluJb SINE Alu 1 312 0 17445 201 39 27 chr11 57249787 57249982 -91533490 - ERVL-B1 LTR ERVL -5479 285 2 1515 190 49 52 chr11 57249983 57250028 -91533444 - MLT2B1 LTR ERVL 0 414 370 215 0 67 0 chr11 57250028 57250058 -91533414 + (TAGA)n Simple_repeat Simple_repeat 3 34 0 1515 190 49 52 chr11 57250058 57250445 -91533027 - MLT2B1 LTR ERVL -44 370 1 350 387 21 5 chr11 57250452 57250643 -91532829 - L1MEd LINE L1 -5005 1114 921 2168 162 39 38 chr11 57251401 57251947 -91531525 + MLT2A2 LTR ERVL 1 547 -7 2093 138 122 13 chr11 57252984 57253368 -91530104 - MSTA LTR MaLR -2 426 1 337 279 99 19 chr11 57253382 57253543 -91529929 - L2 LINE L2 -46 3267 3094 1165 279 31 22 chr11 57253608 57254117 -91529355 - L1M4 LINE L1 -2071 4075 3562 3699 200 32 29 chr11 57254124 57255029 -91528443 - L1MB8 LINE L1 -9 6169 5262 353 153 0 0 chr11 57255027 57255086 -91528386 - L1MB8 LINE L1 -2467 3679 3621 * 1388 150 20 8 chr11 57255086 57255332 -91528140 + L1MB1 LINE L1 5817 6065 -103 * 3261 136 28 0 chr11 57255324 57255936 -91527536 + L1PA16 LINE L1 5436 6165 -1 649 156 0 0 chr11 57256030 57256139 -91527333 + L1MB1 LINE L1 6060 6168 0 1374 265 48 7 chr11 57256139 57256740 -91526732 - L1MB8 LINE L1 -2515 3631 3006 832 216 71 39 chr11 57256742 57256916 -91526556 - L1MB8 LINE L1 -3339 2807 2621 8554 58 2 6 chr11 57256916 57257988 -91525484 - MER11C LTR ERVK -3 1068 1 832 216 71 39 chr11 57257988 57258067 -91525405 - L1MB8 LINE L1 -3525 2621 2546 1059 102 0 0 chr11 57258067 57258204 -91525268 + AluSq/x SINE Alu 1 137 -176 385 279 42 47 chr11 57258224 57258439 -91525033 - L1M4c LINE L1 -4321 2817 2604 24 32 0 0 chr11 57258460 57258491 -91524981 + AT_rich Low_complexity Low_complexity 1 31 0 26 50 0 0 chr11 57258654 57258694 -91524778 + AT_rich Low_complexity Low_complexity 1 40 0 231 156 0 0 chr11 57258708 57258753 -91524719 - LTR66 LTR ERVL -172 438 394 230 156 0 0 chr11 57258715 57258760 -91524712 + LTR66 LTR ERVL 394 438 -172 * 4660 256 63 35 chr11 57258846 57259826 -91523646 - L1M4c LINE L1 -4574 2564 1612 1868 136 0 0 chr11 57259826 57260099 -91523373 - AluSc SINE Alu 0 309 37 4660 256 63 35 chr11 57260099 57261242 -91522230 - L1M4c LINE L1 -5526 1612 241 2064 157 53 31 chr11 57261286 57261820 -91521652 + MLT2A2 LTR ERVL 1 554 0 418 245 0 0 chr11 57261820 57261922 -91521550 - L1M4c LINE L1 -6662 197 96 624 195 81 0 chr11 57261923 57262046 -91521426 - FLAM_C SINE Alu -10 133 1 318 318 9 9 chr11 57262128 57262238 -91521234 - L1M4 LINE L1 -2570 3576 3467 359 269 148 4 chr11 57262590 57262750 -91520722 - MLT1J LTR MaLR -284 162 15 232 179 26 0 chr11 57263030 57263108 -91520364 + (TTA)n Simple_repeat Simple_repeat 3 82 0 548 183 6 112 chr11 57263146 57263458 -91520014 - AluYa5 SINE Alu -5 306 28 1717 214 28 0 chr11 57263482 57263837 -91519635 + MLT1A1 LTR MaLR 1 365 0 906 284 94 94 chr11 57263969 57264169 -91519303 + MLT1G1 LTR MaLR 1 200 -395 1566 190 7 0 chr11 57264169 57264496 -91518976 - AluJb SINE Alu 0 335 7 906 284 94 94 chr11 57264496 57264888 -91518584 + MLT1G1 LTR MaLR 199 594 -1 782 191 0 0 chr11 57265173 57265304 -91518168 - AluJb SINE Alu -24 288 158 191 318 16 48 chr11 57266143 57266269 -91517203 - MIR SINE MIR -49 213 92 2252 113 0 0 chr11 57266556 57266865 -91516607 + AluSc SINE Alu 1 309 0 304 202 0 85 chr11 57266992 57267086 -91516386 + L1MC4 LINE L1 6618 6703 -1339 248 279 81 0 chr11 57267835 57267921 -91515551 - MLT1J LTR MaLR -4 507 415 1702 261 82 52 chr11 57267929 57268585 -91514887 + MER21B LTR ERV1 17 692 -171 312 287 54 39 chr11 57268635 57268764 -91514708 - MLT1J LTR MaLR -123 388 258 1226 256 72 30 chr11 57269052 57269647 -91513825 - L1MEc LINE L1 -1289 4926 4307 302 280 109 54 chr11 57269660 57269827 -91513645 - L1MEc LINE L1 -2500 3715 3559 2220 88 0 3 chr11 57269827 57270139 -91513333 + AluY SINE Alu 1 311 0 302 280 109 54 chr11 57270139 57270299 -91513173 - L1MEc LINE L1 -2656 3559 3409 3199 37 0 0 chr11 57270299 57270682 -91512790 - L1PA5 LINE L1 -4 6150 5768 302 280 109 54 chr11 57270682 57271037 -91512435 - L1MEc LINE L1 -2806 3409 2993 5133 185 19 32 chr11 57271043 57272826 -91510646 - L1MA8 LINE L1 0 6291 4532 528 182 0 0 chr11 57272926 57273025 -91510447 + L1PB4 LINE L1 6056 6154 -2 2038 138 7 0 chr11 57273670 57274013 -91509459 + AluSx SINE Alu 1 312 0 562 267 40 17 chr11 57274019 57274200 -91509272 + MIR SINE MIR 40 222 -40 407 237 18 18 chr11 57274526 57274640 -91508832 + LTR67 LTR ERVL 428 541 -16 189 0 0 0 chr11 57275085 57275106 -91508366 + (A)n Simple_repeat Simple_repeat 1 21 0 1566 263 61 56 chr11 57275147 57275299 -91508173 - L1MEc LINE L1 -4023 2373 2223 1952 154 3 3 chr11 57275299 57275598 -91507874 + AluSx SINE Alu 1 299 -13 1566 263 61 56 chr11 57275598 57276415 -91507057 - L1MEc LINE L1 -4173 2223 1399 203 293 87 27 chr11 57276416 57276566 -91506906 - L2 LINE L2 -44 3269 3111 1954 147 0 19 chr11 57276622 57276936 -91506536 + AluSx SINE Alu 1 308 -4 3908 251 36 26 chr11 57276963 57278112 -91505360 + L1M4 LINE L1 16 1175 -5367 274 337 37 22 chr11 57279307 57279468 -91504004 - MIR3 SINE MIR -31 177 14 265 333 43 22 chr11 57280314 57280452 -91503020 - MIR SINE MIR -72 190 50 1655 154 88 6 chr11 57280500 57280831 -91502641 + MER46B DNA MER2_type 1 233 -3 308 308 34 48 chr11 57281944 57282090 -91501382 - L2 LINE L2 -4 3309 3166 227 217 0 0 chr11 57282100 57282153 -91501319 + (TA)n Simple_repeat Simple_repeat 1 53 0 2388 43 0 30 chr11 57282267 57282571 -91500901 + AluY SINE Alu 1 295 -16 260 272 42 38 chr11 57282781 57282933 -91500539 + L1M3c LINE L1 958 1237 -5851 1585 265 29 40 chr11 57283585 57284074 -91499398 + L1M3c LINE L1 1539 2049 -5049 1729 189 0 0 chr11 57284074 57284359 -91499113 + AluJo SINE Alu 1 285 -27 1585 265 29 40 chr11 57284359 57284732 -91498740 + L1M3c LINE L1 2049 2424 -4674 1464 270 53 10 chr11 57284740 57285263 -91498209 + L1PBa LINE L1 6 551 -6312 1947 195 39 20 chr11 57285274 57285716 -91497756 + L1PBa LINE L1 596 1045 -5818 423 145 0 0 chr11 57285720 57285782 -91497690 + L1PBa LINE L1 1093 1154 -5709 203 324 14 0 chr11 57286430 57286501 -91496971 + CT-rich Low_complexity Low_complexity 3 74 0 1242 85 43 11 chr11 57286647 57286835 -91496637 - L1PB2 LINE L1 -2 6149 5956 196 377 43 0 chr11 57286996 57287065 -91496407 + MIR SINE MIR 48 119 -143 216 328 64 48 chr11 57287806 57287931 -91495541 - MIR3 SINE MIR 0 208 82 189 333 0 15 chr11 57288038 57288104 -91495368 - MIR SINE MIR -62 146 82 271 299 55 55 chr11 57288820 57288984 -91494488 + MIR SINE MIR 53 216 -46 228 273 0 0 chr11 57289441 57289518 -91493954 + (TATATG)n Simple_repeat Simple_repeat 4 80 0 859 292 44 18 chr11 57289564 57289951 -91493521 - L1ME LINE L1 -382 5788 5392 268 295 155 0 chr11 57290295 57290424 -91493048 + MIR SINE MIR 108 256 -6 2180 91 11 0 chr11 57290644 57290931 -91492541 + AluSx SINE Alu 1 290 -22 334 202 11 11 chr11 57290931 57291020 -91492452 + (TATG)n Simple_repeat Simple_repeat 2 90 0 327 176 33 0 chr11 57291335 57291426 -91492046 + (TA)n Simple_repeat Simple_repeat 1 94 0 23 0 0 0 chr11 57291426 57291449 -91492023 + AT_rich Low_complexity Low_complexity 1 23 0 302 310 43 14 chr11 57293042 57293181 -91490291 - MIR3 SINE MIR -28 180 36 973 281 19 52 chr11 57293561 57293928 -91489544 + LTR16A LTR ERVL 91 445 -5 5832 112 37 3 chr11 57293973 57294939 -91488533 - L1PA15 LINE L1 0 6165 5170 299 296 43 35 chr11 57295210 57295325 -91488147 - MIR SINE MIR -79 183 68 212 196 0 78 chr11 57295367 57295418 -91488054 - MIR SINE MIR -116 146 100 299 326 34 75 chr11 57295500 57295647 -91487825 - MIR3 SINE MIR -67 141 1 357 303 176 0 chr11 57296044 57296209 -91487263 + MIR SINE MIR 21 214 -48 475 286 18 0 chr11 57296290 57296402 -91487070 - MER81 DNA DNA 0 114 1 207 378 109 0 chr11 57296438 57296557 -91486915 - L2 LINE L2 0 3272 3141 266 167 36 83 chr11 57296772 57296856 -91486616 + MER103 DNA DNA 43 122 -44 439 320 68 41 chr11 57297467 57297686 -91485786 + MIR SINE MIR 28 252 -10 181 229 33 49 chr11 57297707 57297768 -91485704 - MIR SINE MIR -94 168 109 21 0 0 0 chr11 57297872 57297893 -91485579 + AT_rich Low_complexity Low_complexity 1 21 0 2455 62 7 0 chr11 57298262 57298569 -91484903 - AluY SINE Alu -2 309 1 1953 58 0 0 chr11 57298744 57298986 -91484486 - L1P3 LINE L1 -378 5776 5535 7149 218 46 32 chr11 57298986 57299083 -91484389 - L1 LINE L1 -1813 5752 5658 2120 126 3 0 chr11 57299083 57299385 -91484087 - AluSq SINE Alu -10 303 1 7149 218 46 32 chr11 57299385 57300482 -91482990 - L1 LINE L1 -1907 5658 4578 1623 187 36 4 chr11 57300482 57300760 -91482712 - AluJo SINE Alu -25 287 1 7149 218 46 32 chr11 57300760 57301937 -91481535 - L1 LINE L1 -2987 4578 3344 1515 29 0 0 chr11 57301960 57302135 -91481337 - L1PA3 LINE L1 -3 6152 5978 4311 24 2 0 chr11 57302135 57303018 -91480454 + L1P1 LINE L1 4877 5760 -395 2916 6 0 0 chr11 57303079 57303393 -91480079 + AluYb8 SINE Alu 1 314 -4 1577 286 52 16 chr11 57303610 57304418 -91479054 - L1 LINE L1 -4276 3289 2453 1039 173 10 5 chr11 57304421 57304623 -91478849 - L1PB1 LINE L1 -8 6143 5941 321 299 107 21 chr11 57305262 57305456 -91478016 + MIR SINE MIR 29 262 0 195 234 31 31 chr11 57305494 57305558 -91477914 + MIR SINE MIR 88 151 -111 679 237 57 21 chr11 57305558 57305570 -91477902 - L1MA4A LINE L1 -321 5982 5972 4393 38 2 0 chr11 57305570 57306100 -91477372 - L1PA4 LINE L1 0 6155 5625 679 237 57 21 chr11 57306100 57306281 -91477191 - L1MA4A LINE L1 -331 5972 5782 * 3254 156 14 32 chr11 57306111 57306295 -91477177 - L1PA16 LINE L1 -215 6667 6481 1786 143 26 0 chr11 57306295 57306567 -91476905 - AluSq SINE Alu -11 302 24 3254 156 14 32 chr11 57306567 57306597 -91476875 - L1PA16 LINE L1 -401 6481 6452 318 130 0 0 chr11 57306597 57306643 -91476829 - FLAM SINE Alu -13 120 75 3254 156 14 32 chr11 57306643 57307421 -91476051 - L1PA16 LINE L1 -430 6452 5686 1925 185 8 0 chr11 57307419 57307808 -91475664 - L1 LINE L1 -1344 5518 5127 * 2510 173 19 8 chr11 57307811 57308327 -91475145 - L1 LINE L1 -1118 5744 5223 598 162 167 96 chr11 57308294 57308492 -91474980 - L1 LINE L1 -3825 3037 2826 * 1018 127 100 0 chr11 57308499 57308728 -91474744 - L1PA16 LINE L1 -4083 2780 2529 2477 88 0 0 chr11 57408970 57409278 -91374194 + AluSp SINE Alu 1 308 -5 418 279 7 15 chr11 57411006 57411142 -91372330 + MIR SINE MIR 120 254 -8 415 345 191 10 chr11 57411153 57411446 -91372026 + L2 LINE L2 2926 3271 -42 21 57 0 0 chr11 57411464 57411499 -91371973 + AT_rich Low_complexity Low_complexity 1 35 0 456 297 8 65 chr11 57411586 57411832 -91371640 - L1ME LINE L1 -603 5563 5332 2561 59 7 0 chr11 57412058 57412362 -91371110 + AluY SINE Alu 1 306 -5 25964 100 10 140 chr11 57412467 57415113 -91368359 + L1PA7 LINE L1 5 2995 -3474 5127 102 25 64 chr11 57415113 57415969 -91367503 + LTR12 LTR ERV1 5 826 0 25964 100 10 140 chr11 57415969 57420399 -91363073 + L1PA7 LINE L1 2995 6467 -2 194 61 0 30 chr11 57420491 57420524 -91362948 + (TTTTA)n Simple_repeat Simple_repeat 1 32 0 6571 23 0 0 chr11 57420524 57421315 -91362157 - L1PA3 LINE L1 -24 6131 5341 588 193 62 12 chr11 57421328 57421489 -91361983 + L1MA9 LINE L1 6106 6274 -38 23 92 0 0 chr11 57421489 57421554 -91361918 + AT_rich Low_complexity Low_complexity 1 65 0 1650 181 0 10 chr11 57421760 57422048 -91361424 + AluJo SINE Alu 5 289 -23 742 245 86 128 chr11 57422079 57423301 -91360171 + L1MC5 LINE L1 6633 7802 -159 7612 31 0 0 chr11 57423625 57424933 -91358539 + L1PA3 LINE L1 4845 6153 -2 232 191 60 36 chr11 57425313 57425397 -91358075 - L1MC/D LINE L1 -2052 5756 5671 567 280 202 26 chr11 57425711 57426018 -91357454 + L2 LINE L2 2947 3307 -6 220 313 217 9 chr11 57426307 57426420 -91357052 - MIR SINE MIR -62 146 4 934 162 19 0 chr11 57426984 57427138 -91356334 - MER5A DNA MER1_type -1 188 32 337 321 65 18 chr11 57428488 57428656 -91354816 + MIR SINE MIR 20 195 -67 703 300 142 47 chr11 57428721 57429480 -91353992 + HAL1 LINE L1 25 855 -1652 1186 239 83 69 chr11 57430737 57431378 -91352094 + HAL1 LINE L1 1454 2103 -404 735 264 104 0 chr11 57431385 57431578 -91351894 - MIR SINE MIR -29 233 21 620 237 40 84 chr11 57431593 57431845 -91351627 + HAL1 LINE L1 2100 2327 -180 2190 106 0 37 chr11 57431845 57432167 -91351305 + AluSg SINE Alu 1 310 0 620 237 40 84 chr11 57432167 57432340 -91351132 + HAL1 LINE L1 2327 2506 -1 246 288 150 0 chr11 57432924 57433004 -91350468 + MER91C DNA MER1_type 14 105 -35 778 277 54 4 chr11 57433454 57433696 -91349776 + MIR SINE MIR 2 255 -7 933 279 194 20 chr11 57434290 57434421 -91349051 - L2 LINE L2 0 3313 3206 183 42 0 0 chr11 57434421 57434445 -91349027 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 933 279 194 20 chr11 57434445 57434966 -91348506 - L2 LINE L2 -107 3206 2544 2154 142 0 0 chr11 57435785 57436088 -91347384 + AluSx SINE Alu 1 303 -9 309 337 40 0 chr11 57436291 57436392 -91347080 - L2 LINE L2 0 3313 3209 2177 91 0 11 chr11 57436761 57437073 -91346399 + AluSg SINE Alu 1 309 0 22 0 0 0 chr11 57437803 57437825 -91345647 + AT_rich Low_complexity Low_complexity 1 22 0 578 212 66 7 chr11 57437993 57438130 -91345342 + MER58B DNA MER1_type 197 341 0 622 269 151 32 chr11 57438201 57438471 -91345001 + L1MC4a LINE L1 2651 2888 -3258 375 60 0 0 chr11 57438471 57438521 -91344951 + (CA)n Simple_repeat Simple_repeat 2 51 0 622 269 151 32 chr11 57438521 57438715 -91344757 + L1MC4a LINE L1 2888 3170 -2976 22 35 0 0 chr11 57438879 57438908 -91344564 + AT_rich Low_complexity Low_complexity 1 29 0 3664 194 37 46 chr11 57439510 57440571 -91342901 + L1MA9 LINE L1 5221 6274 -38 321 260 201 7 chr11 57440606 57440760 -91342712 + L1MC4a LINE L1 4532 4715 -1431 608 174 7 56 chr11 57440763 57440907 -91342565 + FLAM_C SINE Alu 7 143 0 1866 157 19 19 chr11 57440991 57441303 -91342169 + AluJo SINE Alu 1 312 0 380 339 74 33 chr11 57441492 57441855 -91341617 + L1MC4a LINE L1 4783 5160 -986 21 36 0 0 chr11 57441855 57441883 -91341589 + AT_rich Low_complexity Low_complexity 1 28 0 474 307 87 41 chr11 57441919 57442480 -91340992 + L1MC4a LINE L1 5313 5899 -1909 1806 182 0 10 chr11 57442497 57442799 -91340673 + AluJo SINE Alu 1 299 -13 285 250 43 9 chr11 57443263 57443379 -91340093 - L1ME4a LINE L1 -13 6108 5989 455 297 111 42 chr11 57443480 57443725 -91339747 - MIR SINE MIR -1 261 3 368 290 77 19 chr11 57443725 57443932 -91339540 - L1ME4a LINE L1 -295 5826 5608 579 277 122 39 chr11 57445425 57445891 -91337581 - LTR33A LTR ERVL -8 515 11 230 162 0 0 chr11 57446058 57446095 -91337377 - L2 LINE L2 -14 3299 3263 686 254 230 33 chr11 57447526 57447952 -91335520 - L2 LINE L2 0 3313 2804 415 164 0 0 chr11 57448057 57448124 -91335348 + AluS SINE Alu 1 67 -244 2158 105 0 7 chr11 57448154 57448450 -91335022 + AluSg SINE Alu 1 294 -16 1945 115 3 48 chr11 57448603 57448915 -91334557 + AluSq SINE Alu 1 298 -15 1553 222 132 7 chr11 57449123 57449699 -91333773 + MER114 LTR ERV 1 648 0 207 0 0 0 chr11 57449903 57449926 -91333546 + (TG)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr11 57449926 57449948 -91333524 + AT_rich Low_complexity Low_complexity 1 22 0 2166 132 0 0 chr11 57451223 57451519 -91331953 + AluSx SINE Alu 1 296 -16 304 158 0 18 chr11 57451685 57451742 -91331730 + MER94 DNA DNA 77 132 -2 755 184 74 0 chr11 57451760 57451923 -91331549 - L2 LINE L2 -532 2782 2608 1951 160 0 3 chr11 57452279 57452592 -91330880 - AluJb SINE Alu 0 312 1 21 0 0 0 chr11 57452596 57452617 -91330855 + AT_rich Low_complexity Low_complexity 1 21 0 2361 109 3 0 chr11 57452924 57453235 -91330237 + AluSx SINE Alu 1 312 0 1482 187 28 21 chr11 57453962 57454281 -91329191 + AluJb SINE Alu 1 321 0 516 302 139 0 chr11 57454614 57454829 -91328643 - MIR SINE MIR -3 259 15 330 331 81 0 chr11 57454819 57454943 -91328529 + MIR3 SINE MIR 26 159 -49 * 492 198 115 10 chr11 57455314 57455506 -91327966 + L1MC5 LINE L1 7471 7682 -279 626 235 42 51 chr11 57455549 57455860 -91327612 + L1MC5 LINE L1 7629 7936 -25 2284 90 6 6 chr11 57455861 57456173 -91327299 + AluSp SINE Alu 1 312 -1 317 286 98 9 chr11 57457265 57457377 -91326095 + MIR SINE MIR 85 206 -56 1285 194 16 70 chr11 57459675 57459989 -91323483 - AluJo SINE Alu -15 297 1 221 290 76 76 chr11 57460783 57461007 -91322465 - L2 LINE L2 -4 3268 3045 409 221 147 29 chr11 57463522 57463658 -91319814 + MIR SINE MIR 89 240 -22 1956 112 10 14 chr11 57463894 57464190 -91319282 - AluSq SINE Alu -18 295 1 320 287 93 31 chr11 57465125 57465254 -91318218 + MIR3 SINE MIR 3 139 -69 21 0 0 0 chr11 57466263 57466284 -91317188 + AT_rich Low_complexity Low_complexity 1 21 0 327 197 192 48 chr11 57466819 57467027 -91316445 - L1MC5 LINE L1 -44 7917 7680 773 176 182 0 chr11 57467101 57467277 -91316195 - MER3 DNA MER1_type 0 209 2 402 156 117 0 chr11 57468873 57468950 -91314522 - AluSq/x SINE Alu -180 133 48 352 219 0 0 chr11 57469774 57469838 -91313634 - L2 LINE L2 -1 3312 3249 277 307 114 34 chr11 57469845 57470021 -91313451 - L2 LINE L2 -172 3141 2952 285 234 102 29 chr11 57470462 57470599 -91312873 + MER103 DNA DNA 11 157 -9 22 56 0 0 chr11 57471277 57471313 -91312159 + AT_rich Low_complexity Low_complexity 1 36 0 1685 160 38 14 chr11 57471601 57471894 -91311578 - AluJo SINE Alu -12 300 1 290 157 18 0 chr11 57472851 57472914 -91310558 - MLT1H LTR MaLR -11 584 479 466 227 26 13 chr11 57473122 57473276 -91310196 - L1M4 LINE L1 -1602 4544 4389 1173 244 88 8 chr11 57473584 57473957 -91309515 - L1ME3A LINE L1 -78 6092 5690 947 240 48 24 chr11 57473951 57474243 -91309229 - L1MB7 LINE L1 0 6184 5886 * 1417 123 36 5 chr11 57474266 57474486 -91308986 - ERVL LTR ERVL -1317 4447 4221 576 239 30 81 chr11 57474481 57474609 -91308863 - ERVL LTR ERVL -5274 490 374 * 1999 131 7 13 chr11 57474609 57474914 -91308558 - AluSx SINE Alu -7 305 3 576 239 30 81 chr11 57474914 57474982 -91308490 - ERVL LTR ERVL -5390 374 304 1243 166 62 72 chr11 57475024 57475287 -91308185 + L1MA7 LINE L1 5811 6072 -219 2155 173 68 0 chr11 57475287 57475686 -91307786 - MSTB LTR MaLR 0 426 1 1243 166 62 72 chr11 57475686 57475742 -91307730 + L1MA7 LINE L1 6072 6127 -164 286 109 0 18 chr11 57475850 57475905 -91307567 - Tigger3(Golem) DNA MER2_type -414 2615 2562 695 352 122 19 chr11 57476170 57476687 -91306785 + L2 LINE L2 2216 2785 -529 339 277 169 7 chr11 57477587 57477735 -91305737 + MIR SINE MIR 4 175 -87 1938 142 17 7 chr11 57478102 57478404 -91305068 - AluSx SINE Alu -7 305 1 13167 142 98 20 chr11 57478476 57480995 -91302477 - Tigger2 DNA MER2_type 0 2718 2 342 0 0 0 chr11 57481279 57481317 -91302155 + (TG)n Simple_repeat Simple_repeat 2 39 0 4135 217 120 40 chr11 57481318 57484454 -91299018 - L1MB5 LINE L1 -9 6663 3177 2197 117 0 3 chr11 57484454 57484752 -91298720 - AluSx SINE Alu -15 297 1 4135 217 120 40 chr11 57484752 57485134 -91298338 - L1MB5 LINE L1 -3495 3177 2827 288 239 102 0 chr11 57485136 57485224 -91298248 + MLT1C LTR MaLR 3 99 -368 324 73 0 0 chr11 57485234 57485275 -91298197 + MLT1C LTR MaLR 427 467 0 322 208 73 10 chr11 57485275 57485371 -91298101 + MLT1C-int LTR MaLR 3 104 -1267 1157 107 0 13 chr11 57485371 57485530 -91297942 + AluSp SINE Alu 148 304 -9 4364 209 72 42 chr11 57485533 57486636 -91296836 + MLT1C-int LTR MaLR 236 1371 0 1455 225 76 11 chr11 57486639 57487075 -91296397 + MLT1C LTR MaLR 4 467 0 2496 219 188 29 chr11 57487077 57487164 -91296308 - L1MB5 LINE L1 -3816 2828 2756 1219 138 81 0 chr11 57487164 57487374 -91296098 - MER30 DNA MER1_type 0 230 4 2496 219 188 29 chr11 57487374 57488580 -91294892 - L1MB5 LINE L1 -3888 2756 1297 1913 145 0 28 chr11 57488580 57488898 -91294574 - AluSq SINE Alu -4 309 1 2496 219 188 29 chr11 57488898 57489005 -91294467 - L1MB5 LINE L1 -5347 1297 1208 1211 114 129 0 chr11 57489031 57489241 -91294231 - L1PA16 LINE L1 -5 6161 5925 230 254 42 0 chr11 57489248 57489319 -91294153 - L1MB5 LINE L1 -5641 901 828 220 331 54 62 chr11 57489850 57489980 -91293492 + MIR3 SINE MIR 50 178 -30 25 51 0 0 chr11 57489983 57490022 -91293450 + AT_rich Low_complexity Low_complexity 1 39 0 443 282 153 11 chr11 57490250 57490512 -91292960 - L1MC4a LINE L1 -1888 5920 5622 263 302 158 5 chr11 57490349 57490551 -91292921 - L1PA8A LINE L1 -322 5809 5577 * 668 277 138 39 chr11 57490760 57491121 -91292351 - L1ME LINE L1 -335 5786 5390 2088 128 0 0 chr11 57491128 57491434 -91292038 - AluSg SINE Alu -4 306 1 240 368 0 0 chr11 57494163 57494258 -91289214 + GA-rich Low_complexity Low_complexity 2 96 0 837 93 78 0 chr11 57495522 57495651 -91287821 - MER85 DNA T2_type 0 139 1 869 206 66 47 chr11 57495661 57496006 -91287466 - MSTD LTR MaLR -4 392 1 595 256 82 18 chr11 57496414 57496633 -91286839 - MIR SINE MIR -27 235 3 425 278 38 22 chr11 57497096 57497284 -91286188 - MIR SINE MIR -4 258 67 351 202 155 47 chr11 57497614 57497743 -91285729 + MIR SINE MIR 88 230 -32 453 255 0 11 chr11 57498198 57498292 -91285180 + MER5A DNA MER1_type 12 104 -85 276 30 0 0 chr11 57499602 57499635 -91283837 + (TG)n Simple_repeat Simple_repeat 2 34 0 200 196 18 36 chr11 57500155 57500211 -91283261 - MER5A DNA MER1_type -36 153 99 350 323 202 0 chr11 57504602 57504800 -91278672 + MIR SINE MIR 13 250 -12 431 248 152 30 chr11 57507509 57507707 -91275765 - MIR SINE MIR 0 262 41 300 27 0 0 chr11 57508872 57508909 -91274563 + (CA)n Simple_repeat Simple_repeat 2 38 0 34 24 0 0 chr11 57509303 57509344 -91274128 + AT_rich Low_complexity Low_complexity 1 41 0 396 103 0 0 chr11 57510635 57510693 -91272779 + (TG)n Simple_repeat Simple_repeat 1 58 0 226 266 133 84 chr11 57511567 57511710 -91271762 - MIR SINE MIR -108 154 5 235 276 102 20 chr11 57511839 57511937 -91271535 + MIR SINE MIR 88 193 -69 334 309 63 34 chr11 57512362 57512537 -91270935 - MIR3 SINE MIR -19 189 10 2413 67 0 0 chr11 57512845 57513130 -91270342 + AluSg SINE Alu 1 285 -25 26 0 0 0 chr11 57513137 57513163 -91270309 + AT_rich Low_complexity Low_complexity 1 26 0 1939 103 76 60 chr11 57513300 57513348 -91270124 + THE1C LTR MaLR 1 47 -328 443 32 32 0 chr11 57513348 57513410 -91270062 + L1PA4 LINE L1 6092 6155 0 1939 103 76 60 chr11 57513410 57513730 -91269742 + THE1C LTR MaLR 47 375 0 608 233 55 0 chr11 57513900 57514046 -91269426 - MIR SINE MIR 0 262 109 208 331 69 75 chr11 57514169 57514581 -91268891 - L2 LINE L2 -213 3059 2597 258 293 146 8 chr11 57514606 57514729 -91268743 - L2 LINE L2 -56 3257 3118 261 380 9 0 chr11 57515133 57515241 -91268231 - L2 LINE L2 -357 2957 2849 1105 193 49 4 chr11 57515252 57515495 -91267977 - MER90 LTR ERV1 0 614 361 411 333 50 23 chr11 57515520 57515739 -91267733 - MER90 LTR ERV1 -386 228 4 807 268 4 31 chr11 57515876 57516137 -91267335 + MER90 LTR ERV1 361 614 0 323 294 18 18 chr11 57516144 57516253 -91267219 - L2 LINE L2 -558 2756 2648 181 327 67 39 chr11 57516537 57516641 -91266831 - L2 LINE L2 -443 2871 2765 2480 66 3 0 chr11 57516675 57516980 -91266492 + AluSc SINE Alu 1 306 -3 208 93 23 23 chr11 57517069 57517112 -91266360 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 354 296 148 48 chr11 57517525 57517714 -91265758 - MIR SINE MIR -50 212 5 204 375 31 0 chr11 57517729 57517793 -91265679 + L2 LINE L2 3119 3184 -88 649 193 187 5 chr11 57518133 57518320 -91265152 - MER58A DNA MER1_type -1 223 3 513 158 16 47 chr11 57518376 57518503 -91264969 - L1M4 LINE L1 -984 5162 5040 583 313 34 14 chr11 57520974 57521182 -91262290 - MIR SINE MIR -35 227 16 396 269 34 8 chr11 57521231 57521350 -91262122 - MIR SINE MIR -35 227 106 327 327 58 0 chr11 57522015 57522119 -91261353 - MIR SINE MIR -122 140 31 292 335 127 23 chr11 57522352 57522525 -91260947 + MIR SINE MIR 47 237 -25 226 193 18 0 chr11 57523337 57523394 -91260078 - L1ME4a LINE L1 -104 6017 5960 322 276 9 19 chr11 57523471 57523576 -91259896 - MIR SINE MIR -67 141 38 262 308 19 28 chr11 57524045 57524152 -91259320 + MIR SINE MIR 34 139 -123 5208 159 10 14 chr11 57524300 57525223 -91258249 - MER49 LTR ERV1 0 923 5 207 0 0 0 chr11 57525564 57525587 -91257885 + (CAGAGA)n Simple_repeat Simple_repeat 2 24 0 954 220 157 29 chr11 57525839 57526221 -91257251 + MER110A LTR ERV1 1 431 -37 2079 185 31 5 chr11 57526502 57526950 -91256522 - L1MA4 LINE L1 -48 6252 5793 207 0 0 0 chr11 57526951 57526974 -91256498 + (TA)n Simple_repeat Simple_repeat 2 24 0 189 0 0 0 chr11 57527074 57527095 -91256377 + (A)n Simple_repeat Simple_repeat 1 21 0 2147 161 28 2 chr11 57527095 57527492 -91255980 + LTR45 LTR ERV1 117 523 -2 4534 223 17 16 chr11 57527585 57529004 -91254468 - L1 LINE L1 -3912 2416 993 568 141 7 3 chr11 57529007 57529107 -91254365 - MER61D LTR ERV1 0 501 333 371 75 12 38 chr11 57529123 57529203 -91254269 + (TTAA)n Simple_repeat Simple_repeat 3 80 0 1277 169 182 0 chr11 57529244 57529574 -91253898 - MER61C LTR ERV1 -60 374 1 3156 143 17 14 chr11 57529575 57530348 -91253124 - MER61C-int LTR ERV1 -1 6938 3508 2997 168 12 20 chr11 57530345 57531666 -91251806 - HUERS-P2 LTR ERV1 -389 4828 617 * 268 258 11 110 chr11 57531651 57531767 -91251705 - HUERS-P2 LTR ERV1 -6243 848 755 * 381 213 0 0 chr11 57531767 57531842 -91251630 - MADE1 DNA Mariner -1 79 5 268 258 11 110 chr11 57531842 57531907 -91251565 - HUERS-P2 LTR ERV1 -6336 755 685 647 148 88 97 chr11 57531934 57532150 -91251322 - HUERS-P2 LTR ERV1 -4763 454 241 254 319 30 66 chr11 57532159 57532325 -91251147 - HUERS-P2 LTR ERV1 -2518 570 411 2114 170 51 5 chr11 57532587 57533017 -91250455 - MER61C LTR ERV1 0 434 1 4181 186 68 25 chr11 57533018 57533968 -91249504 - L1 LINE L1 -4336 992 2 530 241 18 18 chr11 57533972 57534138 -91249334 - L1MEc LINE L1 -3534 2681 2516 354 310 28 35 chr11 57534159 57534304 -91249168 - L1MEc LINE L1 -4928 1468 1325 417 332 66 41 chr11 57534372 57535026 -91248446 + MER110-int LTR ERV1 2426 3095 -1552 1590 212 13 35 chr11 57535537 57535910 -91247562 + MLT1A1 LTR MaLR 1 365 0 708 316 39 28 chr11 57536560 57536991 -91246481 + L1MCc LINE L1 21 456 -5967 2303 153 22 5 chr11 57537255 57537666 -91245806 - MSTB1 LTR MaLR 0 432 15 1042 193 9 13 chr11 57537687 57537915 -91245557 - MSTB1-int LTR MaLR 0 1651 1425 428 221 141 34 chr11 57537946 57538095 -91245377 + L1MCc LINE L1 785 949 -5474 778 156 8 8 chr11 57538418 57538546 -91244926 - FLAM_A SINE Alu -1 132 5 443 289 25 10 chr11 57539005 57539202 -91244270 + L1MCc LINE L1 10 209 -6214 408 309 58 27 chr11 57539228 57539396 -91244076 - MIR SINE MIR -27 181 3 238 268 134 0 chr11 57539554 57539651 -91243821 - MIR3 SINE MIR 0 208 99 802 215 16 39 chr11 57541006 57541262 -91242210 + L1MA9 LINE L1 6025 6274 -38 425 192 77 29 chr11 57542044 57542148 -91241324 - AluJo SINE Alu -8 304 196 1049 216 16 5 chr11 57542442 57542636 -91240836 - AluJo SINE Alu -116 196 1 277 344 46 15 chr11 57543230 57543361 -91240111 - L2 LINE L2 0 3313 3179 260 138 69 0 chr11 57543370 57543428 -91240044 + L1MA8 LINE L1 6230 6291 0 928 128 18 0 chr11 57543833 57543997 -91239475 + CT-rich Low_complexity Low_complexity 3 169 0 573 283 113 35 chr11 57544008 57544326 -91239146 - L1MEc LINE L1 -6012 384 42 809 158 22 0 chr11 57544329 57544468 -91239004 - MER50 LTR ERV1 -24 710 569 2294 118 0 0 chr11 57544468 57544774 -91238698 + AluSg SINE Alu 1 306 -4 195 42 0 0 chr11 57544779 57544803 -91238669 + (A)n Simple_repeat Simple_repeat 1 24 0 225 342 24 27 chr11 57545018 57545316 -91238156 + AluSc SINE Alu 3 299 0 2153 181 14 25 chr11 57545316 57545748 -91237724 - MER50 LTR ERV1 -156 578 152 4775 158 22 12 chr11 57545748 57546683 -91236789 + MER50-int LTR ERV1 201 1225 -5980 709 154 0 0 chr11 57546718 57546861 -91236611 + MER50-int LTR ERV1 1004 1111 -3769 * 1628 118 95 0 chr11 57546858 57547120 -91236352 + MER50-int LTR ERV1 6911 7197 -8 3404 179 14 21 chr11 57547120 57547835 -91235637 + MER50 LTR ERV1 1 710 -24 644 294 20 0 chr11 57548367 57548564 -91234908 - MIR SINE MIR -3 259 59 313 365 101 0 chr11 57549024 57549213 -91234259 - MIR SINE MIR -7 255 48 208 139 0 0 chr11 57549565 57549601 -91233871 + (TA)n Simple_repeat Simple_repeat 2 37 0 509 112 90 0 chr11 57550645 57550734 -91232738 + MER4A LTR ERV1 1 97 -567 367 189 33 56 chr11 57550778 57550868 -91232604 + MER4A LTR ERV1 372 459 -205 1307 149 14 0 chr11 57550881 57551102 -91232370 + MER4B LTR ERV1 381 604 -6 1112 47 160 0 chr11 57551112 57551281 -91232191 + MER4B-int LTR ERV1 1 196 -6402 499 14 28 28 chr11 57551287 57551358 -91232114 - LTR10C LTR ERV1 -520 71 1 409 187 8 32 chr11 57551363 57551486 -91231986 + MER4B-int LTR ERV1 498 617 -5981 352 100 0 0 chr11 57551612 57551662 -91231810 + MER4B-int LTR ERV1 837 886 -5712 * 1391 59 38 164 chr11 57551660 57551997 -91231475 + MER4B-int LTR ERV1 503 739 -4276 3478 89 62 38 chr11 57552007 57552714 -91230758 + MER4B-int LTR ERV1 1771 2494 -4104 1250 172 57 4 chr11 57552715 57552959 -91230513 - LTR8 LTR ERV1 -434 257 1 2299 120 94 36 chr11 57552959 57553510 -91229962 + MER4B-int LTR ERV1 2737 3319 -3279 * 13242 99 61 73 chr11 57553507 57556214 -91227258 + MER4B-int LTR ERV1 3916 6590 -8 379 187 88 11 chr11 57556227 57556318 -91227154 + MER4B LTR ERV1 1 98 -566 1502 154 3 82 chr11 57556358 57556676 -91226796 + MER4A LTR ERV1 372 664 0 452 312 50 0 chr11 57557395 57557616 -91225856 + L1ME LINE L1 5592 5823 -298 344 360 13 99 chr11 57558097 57558469 -91225003 - L2 LINE L2 -17 3255 2916 2358 116 24 14 chr11 57558494 57558865 -91224607 - THE1C LTR MaLR 0 375 1 1641 119 12 56 chr11 57559038 57559358 -91224114 - L1MA8 LINE L1 -134 6157 5852 466 190 26 9 chr11 57559367 57559483 -91223989 + L1MA8 LINE L1 6174 6291 0 22 35 0 0 chr11 57559638 57559667 -91223805 + AT_rich Low_complexity Low_complexity 1 29 0 1212 119 107 0 chr11 57560128 57560372 -91223100 + L1MA4A LINE L1 6033 6302 -1 422 318 29 12 chr11 57561034 57561204 -91222268 + MIR SINE MIR 63 235 -27 319 278 0 33 chr11 57561228 57561318 -91222154 - MLT1H LTR MaLR -75 474 388 4079 85 12 5 chr11 57561890 57562467 -91221005 - LTR10C LTR ERV1 0 591 11 452 325 173 10 chr11 57562834 57563129 -91220343 + L2 LINE L2 2619 2961 -353 180 281 90 56 chr11 57563724 57563813 -91219659 - L2 LINE L2 -45 3227 3136 989 187 22 118 chr11 57564515 57564958 -91218514 - MLT1A1 LTR MaLR -2 363 1 1475 170 0 0 chr11 57565070 57565305 -91218167 - AluSg/x SINE Alu -6 304 70 1577 103 33 0 chr11 57565305 57565518 -91217954 + LTR22A LTR ERVK 239 458 0 5282 114 34 13 chr11 57565525 57566854 -91216618 - L1PBa LINE L1 -4729 2134 634 1108 173 5 0 chr11 57566854 57567051 -91216421 - L1PBa LINE L1 -6663 200 3 3979 247 97 21 chr11 57567063 57567693 -91215779 - L1PBb LINE L1 -3086 3117 2536 347 48 0 0 chr11 57567693 57567735 -91215737 - L1PA12 LINE L1 -4 6164 6123 3979 247 97 21 chr11 57567735 57569255 -91214217 - L1PBb LINE L1 -3667 2536 770 777 205 0 0 chr11 57570559 57570681 -91212791 - FLAM_C SINE Alu -18 125 4 412 337 40 56 chr11 57570814 57570882 -91212590 + L1MEd LINE L1 943 1011 -1479 1949 107 47 30 chr11 57570882 57571180 -91212292 + AluSc SINE Alu 1 303 -6 412 337 40 56 chr11 57571180 57571713 -91211759 + L1MEd LINE L1 1011 1644 -846 2120 102 9 49 chr11 57571728 57572053 -91211419 - AluSq SINE Alu 0 313 2 407 206 37 37 chr11 57572253 57572389 -91211083 - L1ME1 LINE L1 -254 5912 5777 30258 34 3 3 chr11 57572699 57577105 -91206367 + L1PA3 LINE L1 1749 6152 -3 21 57 0 0 chr11 57577379 57577414 -91206058 + AT_rich Low_complexity Low_complexity 1 35 0 29 28 0 0 chr11 57577590 57577626 -91205846 + AT_rich Low_complexity Low_complexity 1 36 0 1508 139 16 4 chr11 57577633 57577884 -91205588 - L1MA4 LINE L1 -20 6280 6027 285 234 251 45 chr11 57577893 57578114 -91205358 - L1MC4a LINE L1 -1631 6177 6003 2647 45 0 3 chr11 57578114 57578428 -91205044 - AluYb8 SINE Alu -5 313 1 285 234 251 45 chr11 57578428 57578560 -91204912 - L1MC4a LINE L1 -1805 6003 5751 1450 222 207 17 chr11 57578660 57579065 -91204407 - MLT2B1 LTR ERVL -37 483 2 23 0 0 0 chr11 57579245 57579268 -91204204 + AT_rich Low_complexity Low_complexity 1 23 0 2002 139 7 0 chr11 57579479 57579774 -91203698 - AluSx SINE Alu -13 299 3 303 327 51 32 chr11 57580448 57580665 -91202807 + L1ME LINE L1 5550 5770 -351 421 231 74 98 chr11 57581148 57581351 -91202121 - MLT1H LTR MaLR -351 198 1 194 0 0 37 chr11 57582036 57582063 -91201409 + (CAA)n Simple_repeat Simple_repeat 2 27 0 2651 137 30 24 chr11 57582074 57582533 -91200939 + L1MA8 LINE L1 5827 6288 -3 273 292 34 11 chr11 57582684 57582773 -91200699 - MIR3 SINE MIR -21 187 97 234 357 7 43 chr11 57583133 57583273 -91200199 + MIR SINE MIR 15 149 -113 236 329 122 38 chr11 57583402 57583560 -91199912 + MIR SINE MIR 6 188 -74 2917 119 73 7 chr11 57583560 57584014 -91199458 + MER31A LTR ERV1 2 485 0 236 329 122 38 chr11 57584014 57584068 -91199404 + MIR SINE MIR 188 236 -26 359 244 102 63 chr11 57584505 57584632 -91198840 - L2 LINE L2 -7 3265 3134 2010 135 3 3 chr11 57584675 57584957 -91198515 + AluSx SINE Alu 1 282 -30 1696 171 13 32 chr11 57585921 57586237 -91197235 + AluJo SINE Alu 1 310 -2 769 173 8 30 chr11 57586274 57586407 -91197065 + AluJo SINE Alu 1 130 -172 2781 240 55 74 chr11 57586482 57587398 -91196074 + L1M4 LINE L1 1 898 -5644 410 165 38 0 chr11 57587398 57587477 -91195995 + L1MB7 LINE L1 6087 6168 -16 260 310 140 40 chr11 57588429 57588629 -91194843 - L3 LINE CR1 -63 1514 1295 207 224 0 0 chr11 57588714 57588763 -91194709 - MIR SINE MIR -30 232 184 3523 69 30 0 chr11 57588763 57589199 -91194273 - L1PA7 LINE L1 -4 6150 5702 21593 97 13 3 chr11 57589200 57592554 -91190918 - L1PA7 LINE L1 -521 5633 2246 3179 290 29 14 chr11 57592551 57593486 -91189986 - L1PA12 LINE L1 -6004 1577 629 * 5056 191 23 14 chr11 57593493 57594959 -91188513 + L1PA16 LINE L1 2148 3621 -3228 2978 153 20 0 chr11 57594969 57595460 -91188012 + L1PA16 LINE L1 6340 6840 -29 804 176 65 0 chr11 57595475 57595628 -91187844 + AluJo SINE Alu 136 298 -14 1163 12 42 0 chr11 57595631 57595796 -91187676 + (TAGA)n Simple_repeat Simple_repeat 2 173 0 454 198 11 0 chr11 57596245 57596336 -91187136 + L1PA16 LINE L1 6061 6152 -14 847 150 71 0 chr11 57596336 57596476 -91186996 + AluJo SINE Alu 139 288 -24 868 46 58 17 chr11 57596483 57596656 -91186816 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 281 47 23 0 chr11 57596662 57596705 -91186767 + (CATAG)n Simple_repeat Simple_repeat 2 45 0 622 220 330 16 chr11 57596735 57597053 -91186419 - L2 LINE L2 -410 2904 2487 398 286 163 10 chr11 57597053 57597249 -91186223 + LTR16B LTR ERVL 1 226 -238 369 286 95 0 chr11 57597299 57597425 -91186047 + LTR16B LTR ERVL 323 460 -4 193 229 100 14 chr11 57597425 57597495 -91185977 - L2 LINE L2 -833 2481 2406 1329 218 28 0 chr11 57597982 57598267 -91185205 - LTR51 LTR ERV1 -154 517 225 1821 177 17 23 chr11 57598320 57598665 -91184807 - MER61A LTR ERV1 0 343 1 284 250 98 18 chr11 57598792 57598904 -91184568 - MER101B LTR ERV1 -448 122 2 484 202 0 0 chr11 57599103 57599192 -91184280 + MER49 LTR ERV1 594 682 -241 22 56 0 0 chr11 57599419 57599455 -91184017 + AT_rich Low_complexity Low_complexity 1 36 0 2006 140 3 3 chr11 57599523 57599816 -91183656 + AluSx SINE Alu 1 293 -19 356 314 24 35 chr11 57599868 57600037 -91183435 + L1MC/D LINE L1 5408 5574 -2234 840 272 73 30 chr11 57600149 57600590 -91182882 + Charlie4a DNA MER1_type 32 491 -17 4743 161 44 50 chr11 57600798 57601410 -91182062 - MER49 LTR ERV1 0 923 316 2206 114 3 19 chr11 57601410 57601727 -91181745 - AluSx SINE Alu 0 312 1 4743 161 44 50 chr11 57601727 57602038 -91181434 - MER49 LTR ERV1 -607 316 5 376 323 62 18 chr11 57602300 57602526 -91180946 - HAL1b LINE L1 -614 734 499 1330 117 0 0 chr11 57602540 57602728 -91180744 + MER51A LTR ERV1 1 188 -446 1959 189 255 15 chr11 57602744 57604714 -91178758 + SATR1 Satellite Satellite 1 2443 -154 2238 49 46 7 chr11 57604718 57605002 -91178470 - AluY SINE Alu -16 295 1 1195 197 216 71 chr11 57605024 57605994 -91177478 + SATR1 Satellite Satellite 1 1111 -1 1022 186 365 0 chr11 57606087 57606421 -91177051 + SATR1 Satellite Satellite 14 469 -1 1099 201 278 0 chr11 57606510 57606944 -91176528 + SATR1 Satellite Satellite 1 554 -51 1175 210 153 89 chr11 57606985 57607614 -91175858 + SATR1 Satellite Satellite 1 668 -2 2591 165 113 15 chr11 57607625 57611769 -91171703 + SATR1 Satellite Satellite 1 4548 -219 2170 131 8 29 chr11 57611785 57612161 -91171311 + MER51A LTR ERV1 281 640 0 329 274 124 32 chr11 57612163 57612349 -91171123 - HAL1b LINE L1 -864 484 282 2089 98 0 35 chr11 57612423 57612741 -91170731 - AluY SINE Alu -4 307 1 862 223 206 21 chr11 57613639 57613921 -91169551 + MER77 LTR ERV1 16 349 -256 4309 169 33 30 chr11 57615878 57617003 -91166469 + L1MB2 LINE L1 5040 6167 -4 2059 115 11 0 chr11 57617093 57617394 -91166078 + AluSx SINE Alu 1 304 0 878 265 92 17 chr11 57617454 57617692 -91165780 - MIR SINE MIR 0 262 7 471 327 115 5 chr11 57617949 57618157 -91165315 + MIR SINE MIR 8 238 -24 498 332 74 9 chr11 57618209 57618438 -91165034 + L3 LINE CR1 1252 1495 -82 1773 154 54 43 chr11 57619440 57619811 -91163661 - THE1C LTR MaLR 0 375 1 359 275 180 0 chr11 57620279 57620490 -91162982 - MLT1H1 LTR MaLR -6 549 301 235 217 67 0 chr11 57620566 57620626 -91162846 - MLT1H1 LTR MaLR -367 182 119 6603 194 23 38 chr11 57620822 57622456 -91161016 + L1M3f LINE L1 4 1660 -4668 2014 163 3 0 chr11 57622456 57622762 -91160710 + AluSx SINE Alu 1 307 -5 6603 194 23 38 chr11 57622762 57623068 -91160404 + L1M3f LINE L1 1660 1969 -4359 1417 192 34 64 chr11 57623068 57623365 -91160107 - AluJo SINE Alu -24 288 1 6603 194 23 38 chr11 57623365 57625246 -91158226 + L1M3f LINE L1 1969 3986 -2342 11261 116 30 5 chr11 57625251 57627047 -91156425 + L1PBa LINE L1 3 1843 -5020 475 90 0 0 chr11 57627040 57627107 -91156365 + THE1B-int LTR MaLR 364 430 -1150 * 7474 122 15 11 chr11 57627149 57628294 -91155178 + THE1B-int LTR MaLR 431 1580 0 1119 110 0 0 chr11 57628294 57628448 -91155024 + THE1B LTR MaLR 1 154 -210 608 155 17 17 chr11 57628446 57628575 -91154897 + THE1B LTR MaLR 237 364 0 * 2214 121 0 0 chr11 57628575 57628898 -91154574 + THE1B-int LTR MaLR 1 323 -1257 476 62 0 0 chr11 57628898 57628963 -91154509 + L1M1 LINE L1 5710 5774 -529 198 0 0 0 chr11 57629121 57629143 -91154329 + (T)n Simple_repeat Simple_repeat 1 22 0 553 161 9 18 chr11 57629143 57629255 -91154217 - LTR45 LTR ERV1 -402 123 13 1569 174 84 42 chr11 57629449 57629806 -91153666 + THE1C LTR MaLR 2 373 -2 346 292 14 7 chr11 57629985 57630132 -91153340 - MER65-int LTR ERV1 -408 6393 4212 617 272 145 22 chr11 57630762 57630990 -91152482 - MIR SINE MIR -5 257 2 308 234 213 0 chr11 57631053 57631147 -91152325 + L2 LINE L2 3189 3302 -11 954 145 6 0 chr11 57631359 57631538 -91151934 + L1MA4 LINE L1 6094 6273 -27 432 297 109 0 chr11 57632884 57633022 -91150450 + MIR SINE MIR 19 171 -91 14087 139 14 16 chr11 57633030 57635490 -91147982 + L1P LINE L1 12 2466 -3680 227 286 0 0 chr11 57635496 57635587 -91147885 + L1MC4 LINE L1 6613 6703 -1339 * 235 239 23 0 chr11 57635509 57635597 -91147875 - L1MC4 LINE L1 -1339 6703 6614 313 179 0 0 chr11 57635627 57635683 -91147789 - L1MC4 LINE L1 -1339 6703 6648 20996 80 0 0 chr11 57635685 57639379 -91144093 + L1PA6 LINE L1 2447 6151 -3 26 30 0 0 chr11 57639443 57639476 -91143996 + AT_rich Low_complexity Low_complexity 1 33 0 311 336 27 34 chr11 57639524 57639673 -91143799 - MIR SINE MIR -111 151 4 221 332 96 64 chr11 57639806 57639993 -91143479 + MIR SINE MIR 20 212 -50 739 312 89 23 chr11 57640206 57640848 -91142624 - L2 LINE L2 -17 3296 2613 228 312 177 0 chr11 57641124 57641265 -91142207 + MIR SINE MIR 26 191 -71 592 276 106 9 chr11 57641296 57641513 -91141959 - MIR SINE MIR -8 254 17 26 64 0 0 chr11 57642759 57642806 -91140666 + AT_rich Low_complexity Low_complexity 1 47 0 3745 209 29 28 chr11 57642815 57644266 -91139206 - L1MA9 LINE L1 -25 6287 4833 26 50 0 0 chr11 57644638 57644678 -91138794 + AT_rich Low_complexity Low_complexity 1 40 0 800 289 10 0 chr11 57644788 57644992 -91138480 + MIR SINE MIR 57 262 0 228 257 0 0 chr11 57645398 57645468 -91138004 + (TA)n Simple_repeat Simple_repeat 2 71 0 247 186 0 0 chr11 57645483 57645542 -91137930 - L1MC4 LINE L1 -1338 6704 6646 631 247 25 0 chr11 57645652 57645814 -91137658 - L1ME1 LINE L1 -9 6157 5992 723 235 35 5 chr11 57645817 57646017 -91137455 + MER92B LTR ERV1 106 311 -325 749 200 6 10 chr11 57646130 57646304 -91137168 + MER92B LTR ERV1 45 145 -267 467 195 41 8 chr11 57646330 57646453 -91137019 + MER92B LTR ERV1 463 589 -47 731 208 0 7 chr11 57646638 57646787 -91136685 + MLT2F LTR ERVL 1 148 -515 1596 98 70 8 chr11 57646829 57647073 -91136399 + THE1B-int LTR MaLR 1322 1580 0 1811 147 14 49 chr11 57647075 57647309 -91136163 + THE1B LTR MaLR 3 223 -141 2234 90 3 23 chr11 57647309 57647619 -91135853 + AluY SINE Alu 1 304 -7 1811 147 14 49 chr11 57647619 57647731 -91135741 + THE1B LTR MaLR 223 337 -27 239 378 67 0 chr11 57648750 57648869 -91134603 + L2 LINE L2 3146 3272 0 453 196 39 10 chr11 57648958 57649060 -91134412 + MLT1A1 LTR MaLR 5 109 -256 344 106 0 0 chr11 57649092 57649139 -91134333 + MLT1A2 LTR MaLR 328 374 0 4198 122 3 3 chr11 57649390 57650037 -91133435 + L1PB2 LINE L1 5505 6151 0 23 0 0 0 chr11 57650592 57650615 -91132857 + AT_rich Low_complexity Low_complexity 1 23 0 192 333 0 48 chr11 57650738 57650822 -91132650 + MIR SINE MIR 50 129 -79 1226 154 5 5 chr11 57651154 57651368 -91132104 + L1PA14 LINE L1 5939 6152 -9 2417 234 14 65 chr11 57652084 57652564 -91130908 + L1PA12 LINE L1 2098 2601 -4980 1591 193 42 0 chr11 57652564 57652829 -91130643 + AluSx SINE Alu 3 278 -34 2116 130 13 47 chr11 57652831 57653215 -91130257 + THE1C LTR MaLR 5 375 0 2417 234 14 65 chr11 57653215 57653503 -91129969 + L1PA12 LINE L1 2602 2830 -4751 573 229 85 52 chr11 57653591 57653990 -91129482 + LTR30 LTR ERV1 115 596 0 3796 270 20 29 chr11 57653990 57656084 -91127388 + HERV3 LTR ERV1 1 2353 -6073 6145 250 19 30 chr11 57656091 57657853 -91125619 + HERV3 LTR ERV1 3508 5250 -3176 4328 248 24 38 chr11 57657854 57659212 -91124260 + HERV3 LTR ERV1 5622 6960 -1775 273 172 31 0 chr11 57659212 57659276 -91124196 + HERV3 LTR ERV1 5705 5770 -1126 493 333 0 0 chr11 57659306 57659474 -91123998 + HERV3 LTR ERV1 7550 7717 -709 2085 312 4 6 chr11 57659543 57660232 -91123240 + HERV3 LTR ERV1 7736 8423 -3 635 241 101 39 chr11 57660324 57660700 -91122772 + LTR30 LTR ERV1 108 471 -22 9992 230 29 47 chr11 57660711 57662887 -91120585 + L1PA12 LINE L1 2816 5031 -2553 2239 137 19 6 chr11 57662887 57663246 -91120226 - THE1B LTR MaLR 0 364 1 9861 123 46 4 chr11 57663246 57664761 -91118711 - THE1B-int LTR MaLR 0 1580 2 2292 138 8 27 chr11 57664762 57665133 -91118339 - THE1B LTR MaLR 0 364 1 9992 230 29 47 chr11 57665133 57665811 -91117661 + L1PA12 LINE L1 5030 5582 -2002 1772 171 10 14 chr11 57665811 57666103 -91117369 + AluSx SINE Alu 5 295 -17 9992 230 29 47 chr11 57666103 57666574 -91116898 + L1PA12 LINE L1 5582 6060 -1524 4249 224 56 13 chr11 57666575 57668034 -91115438 + L1 LINE L1 2466 3977 -2169 6632 149 27 21 chr11 57668034 57669276 -91114196 - HSMAR2 DNA Mariner -2 1300 51 1742 168 0 0 chr11 57669280 57669554 -91113918 - AluJb SINE Alu -4 308 35 216 0 0 0 chr11 57669580 57669604 -91113868 + (T)n Simple_repeat Simple_repeat 1 24 0 1077 298 31 45 chr11 57670885 57671399 -91112073 - L2 LINE L2 -503 2811 2305 1754 180 3 0 chr11 57671572 57671883 -91111589 - AluSq SINE Alu 0 312 1 182 297 76 68 chr11 57672785 57672903 -91110569 - L2 LINE L2 -181 3091 2973 266 262 196 0 chr11 57673486 57673593 -91109879 - MIR SINE MIR -70 192 65 334 250 68 38 chr11 57673741 57673788 -91109684 - MER5A DNA MER1_type -2 187 143 207 0 0 0 chr11 57673788 57673811 -91109661 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 334 250 68 38 chr11 57673811 57673895 -91109577 - MER5A DNA MER1_type -46 143 52 358 280 8 42 chr11 57673939 57674057 -91109415 - MER5A DNA MER1_type -22 167 54 368 237 35 9 chr11 57675480 57675594 -91107878 - Charlie7 DNA MER1_type -2470 142 26 203 222 0 32 chr11 57675859 57675922 -91107550 + L2 LINE L2 3159 3219 -94 312 226 2 94 chr11 57676136 57676251 -91107221 + MIR SINE MIR 66 172 -36 2244 87 7 3 chr11 57676423 57676721 -91106751 - AluY SINE Alu -12 299 1 252 149 0 0 chr11 57677680 57677727 -91105745 + (TG)n Simple_repeat Simple_repeat 2 48 0 1699 229 60 68 chr11 57678741 57679119 -91104353 - LTR9 LTR ERV1 -1 611 238 1953 126 10 17 chr11 57679119 57679421 -91104051 + AluSg1 SINE Alu 1 300 -9 1699 229 60 68 chr11 57679421 57679658 -91103814 - LTR9 LTR ERV1 -374 238 1 494 245 14 20 chr11 57679744 57679891 -91103581 + MLT1B LTR MaLR 229 374 -16 244 347 74 8 chr11 57680956 57681077 -91102395 + L2 LINE L2 2934 3062 -210 335 300 92 25 chr11 57681624 57681744 -91101728 + L2 LINE L2 3144 3271 -1 336 228 0 54 chr11 57682695 57682787 -91100685 - MER5A DNA MER1_type -1 188 102 261 304 93 12 chr11 57683239 57683400 -91100072 + LTR34 LTR ERV1 268 441 -258 418 117 65 0 chr11 57683656 57683733 -91099739 + L1PA16 LINE L1 5989 6070 -96 563 288 41 87 chr11 57684254 57684691 -91098781 + L1MC/D LINE L1 3071 3487 -2659 1694 157 0 10 chr11 57684719 57685032 -91098440 - L1PA16 LINE L1 -293 5873 5564 1584 158 20 10 chr11 57685032 57685329 -91098143 + L1PA16 LINE L1 5863 6163 -3 303 202 43 11 chr11 57685429 57685523 -91097949 + L1P LINE L1 3653 3749 -2397 837 299 68 98 chr11 57685523 57687050 -91096422 + L1MC/D LINE L1 3763 5244 -902 891 306 68 19 chr11 57687055 57687595 -91095877 + L1MC/D LINE L1 5255 5821 -1987 188 67 33 0 chr11 57687739 57687769 -91095703 + (GGAGA)n Simple_repeat Simple_repeat 4 34 0 497 240 129 35 chr11 57688665 57688836 -91094636 - MIR SINE MIR -28 234 48 262 320 66 30 chr11 57688807 57689004 -91094468 + MIR SINE MIR 33 236 -26 * 1839 174 0 7 chr11 57689047 57689340 -91094132 - AluJb SINE Alu -21 291 1 525 291 6 44 chr11 57690041 57690223 -91093249 - MIR SINE MIR -2 260 86 380 280 120 29 chr11 57690421 57690596 -91092876 - MIR SINE MIR -52 210 20 9175 63 6 0 chr11 57690756 57692012 -91091460 - L1PA6 LINE L1 -1702 4444 3182 7031 54 8 1 chr11 57692012 57693684 -91089788 + L1PA6 LINE L1 4448 6153 -1 205 332 126 60 chr11 57693952 57694151 -91089321 + MIR SINE MIR 48 259 -3 207 0 0 0 chr11 57694592 57694615 -91088857 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2428 80 0 0 chr11 57695115 57695426 -91088046 + AluY SINE Alu 1 311 0 1067 194 126 16 chr11 57695464 57695773 -91087699 - L1MB4 LINE L1 -52 6128 5786 1183 146 0 24 chr11 57696165 57696371 -91087101 - MER57B-int LTR ERV1 -5457 489 289 * 3533 178 40 1 chr11 57696366 57697012 -91086460 - MER57B-int LTR ERV1 -6862 675 5 2587 149 9 0 chr11 57697016 57697446 -91086026 - MER57B LTR ERV1 0 434 1 1233 268 149 0 chr11 57697446 57697841 -91085631 + L2 LINE L2 1763 2216 -1098 41141 47 4 2 chr11 57697850 57704012 -91079460 + L1PA4 LINE L1 1 6155 0 808 324 19 23 chr11 57704016 57704325 -91079147 + L2 LINE L2 2216 2523 -791 847 180 12 0 chr11 57704326 57704487 -91078985 + LTR40a LTR ERVL 2 164 -355 688 274 117 0 chr11 57704485 57704708 -91078764 + LTR40a LTR ERVL 271 519 0 * 578 319 55 45 chr11 57704730 57705110 -91078362 + L2 LINE L2 2661 3088 -225 1198 159 31 48 chr11 57705157 57705384 -91078088 - AluJo SINE Alu -19 293 71 5246 117 77 5 chr11 57705384 57706281 -91077191 - LOR1b-int LTR ERV1 -6956 1164 203 1854 154 51 8 chr11 57706290 57706646 -91076826 - LOR1b-int LTR ERV1 -7749 371 1 1896 215 45 2 chr11 57706646 57707088 -91076384 - LOR1b LTR ERV1 0 461 1 233 250 0 19 chr11 57709683 57709735 -91073737 - MIR SINE MIR -137 71 21 580 214 4 120 chr11 57710116 57710350 -91073122 - L1MA10 LINE L1 0 6334 6128 10041 232 14 15 chr11 57710443 57713317 -91070155 + L1 LINE L1 1 2854 -4253 8974 207 41 7 chr11 57713319 57715843 -91067629 + L1 LINE L1 3681 6311 -795 22 0 0 0 chr11 57716788 57716810 -91066662 + AT_rich Low_complexity Low_complexity 1 22 0 228 130 0 0 chr11 57717335 57717381 -91066091 + (T)n Simple_repeat Simple_repeat 1 46 0 225 0 0 0 chr11 57717631 57717656 -91065816 + (T)n Simple_repeat Simple_repeat 1 25 0 799 214 6 6 chr11 57717717 57717885 -91065587 + L1 LINE L1 4001 4168 -1978 4906 179 10 0 chr11 57717907 57718698 -91064774 + L1PA15-16 LINE L1 1 799 -6050 2698 101 5 27 chr11 57718700 57719108 -91064364 + MLT2A1 LTR ERVL 1 399 -45 25 31 0 0 chr11 57719152 57719184 -91064288 + AT_rich Low_complexity Low_complexity 1 32 0 4333 226 33 16 chr11 57719234 57720171 -91063301 + L1PA15-16 LINE L1 734 1635 -5214 5928 223 21 32 chr11 57720178 57721017 -91062455 - MSTB-int LTR MaLR -340 1311 464 2011 102 55 0 chr11 57721017 57721292 -91062180 + AluSq SINE Alu 1 290 -23 5928 223 21 32 chr11 57721292 57721453 -91062019 - MSTB-int LTR MaLR -1187 464 303 4739 100 15 26 chr11 57721453 57722183 -91061289 - LTR30 LTR ERV1 0 722 1 5928 223 21 32 chr11 57722183 57722507 -91060965 - MSTB-int LTR MaLR -1348 303 1 1249 211 38 15 chr11 57722509 57722770 -91060702 - MSTB LTR MaLR -2 424 158 1446 153 31 79 chr11 57722808 57723171 -91060301 - MER4A LTR ERV1 0 664 261 575 172 0 10 chr11 57723171 57723270 -91060202 - MER4A LTR ERV1 -566 98 1 8765 118 43 19 chr11 57723276 57725774 -91057698 - MER4A-int LTR ERV1 0 6598 3271 2183 129 0 0 chr11 57725774 57726077 -91057395 + AluSg SINE Alu 1 303 -7 656 167 28 44 chr11 57726300 57726480 -91056992 - MER4-int LTR ERV1 -2586 4012 3836 * 1403 164 34 36 chr11 57726473 57726857 -91056615 - MER4-int LTR ERV1 -2912 3686 3304 21 0 0 0 chr11 57727863 57727884 -91055588 + AT_rich Low_complexity Low_complexity 1 21 0 2198 101 49 13 chr11 57728625 57729089 -91054383 - MER4-int LTR ERV1 -638 4242 1801 708 146 115 8 chr11 57729089 57729219 -91054253 + LTR8 LTR ERV1 1 144 -547 6783 105 44 18 chr11 57729219 57730426 -91053046 - MER4-int LTR ERV1 -3392 1623 504 1677 135 164 75 chr11 57730426 57730797 -91052675 - MER4A LTR ERV1 0 664 261 625 102 10 20 chr11 57730797 57730895 -91052577 - MER4A LTR ERV1 -566 98 2 499 255 0 0 chr11 57730897 57731003 -91052469 - MSTB LTR MaLR -320 106 1 9483 214 33 17 chr11 57731003 57734454 -91049018 + L1PA16 LINE L1 2661 6166 0 1580 190 34 5 chr11 57734459 57734844 -91048628 + L1 LINE L1 4151 4546 -1600 248 198 86 25 chr11 57734830 57734911 -91048561 + L1MA1 LINE L1 5936 6021 -281 * 685 250 102 0 chr11 57734947 57735017 -91048455 + Charlie1 DNA MER1_type 1441 1502 -1259 180 0 0 0 chr11 57735017 57735037 -91048435 + (TA)n Simple_repeat Simple_repeat 2 21 0 685 250 102 0 chr11 57735037 57735210 -91048262 + Charlie1 DNA MER1_type 1502 1709 -1052 2623 202 82 30 chr11 57735212 57735973 -91047499 + Charlie1 DNA MER1_type 1875 2674 -87 896 157 0 20 chr11 57735978 57736131 -91047341 - MLT2B2 LTR ERVL -2 513 364 333 277 46 15 chr11 57737302 57737432 -91046040 - MIR SINE MIR -12 250 117 189 74 0 0 chr11 57738854 57738881 -91044591 + (TG)n Simple_repeat Simple_repeat 1 27 0 357 24 0 0 chr11 57739086 57739128 -91044344 + (CA)n Simple_repeat Simple_repeat 1 42 0 2627 171 30 2 chr11 57739129 57739569 -91043903 - MLT2B1 LTR ERVL -68 452 1 260 290 0 0 chr11 57739867 57739929 -91043543 + L2 LINE L2 3248 3309 -4 280 327 164 0 chr11 57739945 57740110 -91043362 - MIR SINE MIR 0 262 71 2304 165 59 2 chr11 57740311 57740716 -91042756 - MSTA LTR MaLR 0 428 1 22 35 0 0 chr11 57740962 57740991 -91042481 + AT_rich Low_complexity Low_complexity 1 29 0 2680 179 32 35 chr11 57741594 57742192 -91041280 - L1MA7 LINE L1 -68 6223 5628 266 346 12 0 chr11 57742256 57742337 -91041135 + L2 LINE L2 3185 3266 -6 531 140 21 11 chr11 57742429 57742522 -91040950 + MER4A LTR ERV1 5 98 -566 1675 154 195 20 chr11 57742522 57742866 -91040606 + MER4A LTR ERV1 261 664 0 2528 115 40 16 chr11 57742869 57743529 -91039943 + MER4A-int LTR ERV1 1 818 -5780 6991 134 56 5 chr11 57743532 57744831 -91038641 + MER4A-int LTR ERV1 1131 2495 -4103 1264 165 72 4 chr11 57744831 57745068 -91038404 - LTR8 LTR ERV1 -434 257 5 2489 128 82 12 chr11 57745078 57745577 -91037895 + MER4A-int LTR ERV1 2745 3278 -3320 6518 78 9 22 chr11 57745611 57747127 -91036345 - L1PA7 LINE L1 0 6154 4649 2207 115 0 0 chr11 57747127 57747423 -91036049 + AluSg SINE Alu 3 298 -12 6518 78 9 22 chr11 57747423 57747635 -91035837 - L1PA7 LINE L1 -1505 4649 4436 40794 67 7 1 chr11 57747642 57753752 -91029720 + L1PA5 LINE L1 1 6142 -12 189 94 0 0 chr11 57753752 57753784 -91029688 + (TA)n Simple_repeat Simple_repeat 2 33 0 9921 124 26 0 chr11 57753787 57755368 -91028104 - L1PA7 LINE L1 -1694 4452 2831 440 135 75 53 chr11 57755372 57755505 -91027967 + MER4A-int LTR ERV1 3877 4012 -2586 892 116 0 0 chr11 57755550 57755671 -91027801 - AluSq/x SINE Alu -181 132 12 1089 162 0 0 chr11 57755671 57755838 -91027634 + AluSp SINE Alu 128 294 -19 317 121 30 15 chr11 57755847 57755913 -91027559 + L1MB2 LINE L1 6069 6135 -36 21 0 0 0 chr11 57755941 57755962 -91027510 + AT_rich Low_complexity Low_complexity 1 21 0 2675 90 0 3 chr11 57756793 57757159 -91026313 - L1PA8 LINE L1 0 6172 5808 14438 112 61 28 chr11 57757159 57759242 -91024230 + MER4A-int LTR ERV1 3998 6184 -414 2282 82 0 10 chr11 57759242 57759534 -91023938 - AluY SINE Alu -22 289 1 14438 112 61 28 chr11 57759534 57759963 -91023509 + MER4A-int LTR ERV1 6184 6597 -1 520 165 21 10 chr11 57759968 57760065 -91023407 + MER4A LTR ERV1 1 98 -566 1703 126 161 81 chr11 57760065 57760437 -91023035 + MER4A LTR ERV1 261 662 -2 482 282 16 0 chr11 57760648 57760772 -91022700 - MIR SINE MIR -62 146 21 3425 194 21 15 chr11 57761692 57762404 -91021068 + L1MB4 LINE L1 5364 6079 -101 692 163 11 94 chr11 57762478 57762831 -91020641 + MER52A LTR ERV1 163 472 -806 386 204 32 0 chr11 57762842 57762935 -91020537 + L1MB4 LINE L1 6076 6171 -9 405 0 0 0 chr11 57762937 57762982 -91020490 + (TG)n Simple_repeat Simple_repeat 2 46 0 27 29 0 0 chr11 57763119 57763153 -91020319 + AT_rich Low_complexity Low_complexity 1 34 0 454 331 78 16 chr11 57763796 57764038 -91019434 + MIR SINE MIR 5 261 -1 2068 127 0 0 chr11 57764487 57764787 -91018685 - AluSc SINE Alu -9 300 1 1738 241 69 27 chr11 57765000 57765478 -91017994 + MLT1D LTR MaLR 8 505 0 677 230 69 18 chr11 57767827 57768044 -91015428 - L1MC4a LINE L1 -1850 5958 5731 22 0 0 0 chr11 57768335 57768357 -91015115 + AT_rich Low_complexity Low_complexity 1 22 0 196 333 40 13 chr11 57770326 57770401 -91013071 - L2 LINE L2 -5 3308 3232 345 278 33 0 chr11 57771400 57771490 -91011982 - MIR3 SINE MIR -10 198 106 612 313 79 3 chr11 57771868 57772184 -91011288 + L1ME4a LINE L1 5543 5882 -239 1997 123 3 17 chr11 57772221 57772557 -91010915 + AluSg SINE Alu 1 310 0 651 292 19 28 chr11 57772926 57773142 -91010330 + MIR SINE MIR 8 221 -41 197 298 69 30 chr11 57773447 57773578 -91009894 - L2 LINE L2 -1320 1994 1859 3899 175 136 3 chr11 57773973 57774139 -91009333 + MER6 DNA MER2_type 1 144 -721 396 0 0 0 chr11 57774139 57774183 -91009289 + (TG)n Simple_repeat Simple_repeat 1 44 0 3899 175 136 3 chr11 57774183 57774295 -91009177 + MER6 DNA MER2_type 144 240 -625 270 0 0 0 chr11 57774295 57774325 -91009147 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 3899 175 136 3 chr11 57774325 57774804 -91008668 + MER6 DNA MER2_type 240 860 -5 211 376 57 36 chr11 57775122 57775454 -91008018 - L2 LINE L2 -2141 1173 835 381 339 62 23 chr11 57776761 57776938 -91006534 + MER5A DNA MER1_type 1 184 -5 1176 263 27 31 chr11 57776983 57777276 -91006196 + AluJo SINE Alu 3 294 -8 258 311 0 47 chr11 57777346 57777452 -91006020 - MIR SINE MIR -64 144 44 21 36 0 0 chr11 57777889 57777917 -91005555 + AT_rich Low_complexity Low_complexity 1 28 0 16374 186 29 13 chr11 57777920 57781002 -91002470 + L1M1 LINE L1 13 3142 -4423 541 154 0 0 chr11 57781002 57781080 -91002392 - AluJ/FLAM SINE Alu -233 79 2 1671 151 25 119 chr11 57781081 57781329 -91002143 + L1M1 LINE L1 4781 4972 -2593 2181 83 7 0 chr11 57781329 57781605 -91001867 + L1PA7 LINE L1 5874 6151 -3 1671 151 25 119 chr11 57781605 57781793 -91001679 + L1M1 LINE L1 4972 5176 -2389 2185 172 0 21 chr11 57781794 57781985 -91001487 - L1 LINE L1 -2042 4104 3924 7606 88 27 18 chr11 57781985 57782982 -91000490 + LTR13 LTR ERVK 1 1006 -1 2185 172 0 21 chr11 57782982 57783179 -91000293 - L1 LINE L1 -2222 3924 3724 235 125 0 0 chr11 57783175 57783215 -91000257 + L1MA3 LINE L1 6264 6303 -2 * 281 306 141 29 chr11 57783520 57783690 -90999782 - L2 LINE L2 -702 2612 2424 757 274 15 5 chr11 57784088 57784292 -90999180 - MIR SINE MIR 0 262 57 546 171 95 19 chr11 57784416 57784521 -90998951 - MLT1B LTR MaLR -275 115 3 241 271 144 17 chr11 57784741 57784859 -90998613 + MIR SINE MIR 67 199 -63 22 0 0 0 chr11 57784860 57784882 -90998590 + AT_rich Low_complexity Low_complexity 1 22 0 461 159 0 0 chr11 57784893 57784962 -90998510 + Tigger2 DNA MER2_type 1 69 -2649 1023 203 6 6 chr11 57784999 57785176 -90998296 - MER8 DNA MER2_type -62 177 1 5136 161 28 7 chr11 57785353 57785953 -90997519 - L1MA8 LINE L1 -11 6280 5652 14982 155 13 7 chr11 57785953 57787503 -90995969 - Tigger1 DNA MER2_type 0 2418 845 2024 129 3 31 chr11 57787503 57787820 -90995652 + AluSq SINE Alu 1 308 -5 14982 155 13 7 chr11 57787820 57788671 -90994801 - Tigger1 DNA MER2_type -1573 845 1 5136 161 28 7 chr11 57788671 57788997 -90994475 - L1MA8 LINE L1 -639 5652 5334 482 172 0 0 chr11 57789299 57789392 -90994080 - Tigger1 DNA MER2_type -1742 676 584 399 41 0 0 chr11 57789550 57789599 -90993873 + (A)n Simple_repeat Simple_repeat 1 49 0 313 267 35 0 chr11 57790782 57790868 -90992604 + MER5A DNA MER1_type 60 148 -41 181 286 0 48 chr11 57790902 57790965 -90992507 - MIR3 SINE MIR -48 160 101 697 262 121 46 chr11 57790996 57791361 -90992111 - L1MEc LINE L1 -5909 487 86 212 0 36 0 chr11 57791361 57791389 -90992083 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 697 262 121 46 chr11 57791389 57791435 -90992037 - L1MEc LINE L1 -6310 86 45 2766 275 41 22 chr11 57791443 57792344 -90991128 - L1MEc LINE L1 -5456 940 23 509 325 104 12 chr11 57792703 57792943 -90990529 - MIR SINE MIR 0 262 1 1333 176 106 21 chr11 57793075 57793405 -90990067 + L1MA10 LINE L1 5932 6289 -45 723 225 45 35 chr11 57794262 57794462 -90989010 - MER3 DNA MER1_type -6 203 2 3220 226 49 43 chr11 57794698 57795912 -90987560 - L1ME1 LINE L1 -19 6147 4937 426 140 43 0 chr11 57795942 57796035 -90987437 - L1ME1 LINE L1 -1573 4573 4477 237 289 249 17 chr11 57796638 57797043 -90986429 - L2 LINE L2 -6 3307 2809 236 255 51 61 chr11 57797322 57797420 -90986052 + L2 LINE L2 3212 3308 -5 * 606 310 130 22 chr11 57797404 57797765 -90985707 - L2 LINE L2 -2 3311 2912 696 234 72 36 chr11 57798172 57798507 -90984965 - LTR35 LTR ERV1 0 675 350 249 220 140 0 chr11 57798629 57798729 -90984743 - LTR35 LTR ERV1 -504 114 1 518 230 209 7 chr11 57799422 57799561 -90983911 + MER5A DNA MER1_type 1 167 -22 285 152 0 76 chr11 57800342 57800408 -90983064 - MIR SINE MIR -144 118 58 1595 194 43 47 chr11 57800587 57801078 -90982394 - MER51A LTR ERV1 0 634 117 967 225 17 48 chr11 57801169 57801458 -90982014 - LTR4 LTR ERV1 0 596 317 242 135 96 19 chr11 57801547 57801599 -90981873 - LTR4 LTR ERV1 -238 358 303 2258 207 0 12 chr11 57801879 57802294 -90981178 - HERV3 LTR ERV1 0 8426 8017 * 16408 189 16 9 chr11 57802287 57805132 -90978340 - HERV3 LTR ERV1 -1913 6513 3650 10071 222 21 3 chr11 57805131 57807017 -90976455 - HERV3 LTR ERV1 -5838 2588 669 * 1377 138 10 31 chr11 57807251 57807554 -90975918 - MER51A LTR ERV1 -179 455 1 400 242 8 16 chr11 57807726 57807850 -90975622 - L1M4 LINE L1 -1902 4244 4122 3134 198 26 11 chr11 57807884 57808451 -90975021 - LTR22 LTR ERVK -4 576 1 4611 175 23 27 chr11 57808452 57809416 -90974056 - HERVK22 LTR ERVK -2 6835 2623 6045 128 42 2 chr11 57809485 57810525 -90972947 - HERVK22 LTR ERVK -2013 4824 2027 535 105 13 0 chr11 57810524 57810600 -90972872 - HERVK22 LTR ERVK -3287 3550 3474 * 799 225 40 6 chr11 57811001 57811174 -90972298 - HERVK22 LTR ERVK -4332 2505 2327 3487 179 44 50 chr11 57811543 57812270 -90971202 - HERVK22 LTR ERVK -6083 754 32 3310 174 18 3 chr11 57812454 57813019 -90970453 - LTR22 LTR ERVK -7 573 1 968 260 28 25 chr11 57813020 57813339 -90970133 - L1M4 LINE L1 -2019 4127 3808 1764 261 88 9 chr11 57813415 57813970 -90969502 - L1MEc LINE L1 -5760 636 38 230 371 11 22 chr11 57814120 57814298 -90969174 + L1M4 LINE L1 3996 4171 -1975 573 173 18 9 chr11 57814763 57814873 -90968599 + MLT1A1 LTR MaLR 1 111 -254 1472 206 2 92 chr11 57814925 57815327 -90968145 - MLT1B LTR MaLR -24 366 1 324 303 42 12 chr11 57815356 57815521 -90967951 + L1M4 LINE L1 4881 5050 -1096 1789 139 4 7 chr11 57815748 57816022 -90967450 + AluSg SINE Alu 33 305 -5 26 74 0 0 chr11 57816198 57816252 -90967220 + AT_rich Low_complexity Low_complexity 1 54 0 24 85 0 0 chr11 57816757 57816816 -90966656 + AT_rich Low_complexity Low_complexity 1 59 0 484 291 184 9 chr11 57816914 57817137 -90966335 + MIR SINE MIR 1 262 0 180 0 0 0 chr11 57817279 57817299 -90966173 + (C)n Simple_repeat Simple_repeat 1 20 0 213 39 0 0 chr11 57817323 57817349 -90966123 + (A)n Simple_repeat Simple_repeat 1 26 0 852 162 16 49 chr11 57817417 57817602 -90965870 - LTR9 LTR ERV1 -433 179 1 273 287 40 0 chr11 57817847 57817948 -90965524 - L1M4 LINE L1 -3584 2562 2458 1206 229 71 34 chr11 57818118 57818472 -90965000 + MLT1A2 LTR MaLR 4 370 -4 29 0 0 0 chr11 57819344 57819373 -90964099 + AT_rich Low_complexity Low_complexity 1 29 0 252 323 105 16 chr11 57820193 57820317 -90963155 + L2 LINE L2 3138 3272 0 514 209 172 31 chr11 57821321 57821484 -90961988 - MER5A DNA MER1_type -1 188 3 289 253 30 30 chr11 57821825 57821924 -90961548 + LTR34 LTR ERV1 268 366 -333 471 276 36 105 chr11 57822775 57823224 -90960248 + L1MC/D LINE L1 3071 3488 -2658 1732 157 0 3 chr11 57823257 57823562 -90959910 - L1PA16 LINE L1 -299 5867 5564 1508 171 20 10 chr11 57823562 57823859 -90959613 + L1PA16 LINE L1 5863 6163 -3 1089 303 120 58 chr11 57823958 57825458 -90958014 + L1MC/D LINE L1 3652 5244 -902 734 312 66 20 chr11 57825463 57826005 -90957467 + L1MC/D LINE L1 5255 5821 -1987 1570 76 41 79 chr11 57826101 57826391 -90957081 - AluYa5 SINE Alu -6 305 27 204 40 0 0 chr11 57826448 57826473 -90956999 + (GGGGA)n Simple_repeat Simple_repeat 3 27 0 542 209 121 68 chr11 57827349 57827555 -90955917 - MIR SINE MIR 0 262 46 334 260 87 24 chr11 57827594 57827721 -90955751 + MIR SINE MIR 102 236 -26 1770 171 0 7 chr11 57827784 57828065 -90955407 - AluJb SINE Alu -33 279 1 609 341 11 30 chr11 57828774 57829038 -90954434 - MIR SINE MIR -2 260 2 407 296 63 28 chr11 57829463 57829605 -90953867 - MIR SINE MIR -96 166 20 310 319 82 58 chr11 57830031 57830238 -90953234 + MIR SINE MIR 48 259 -3 930 190 59 143 chr11 57831175 57831601 -90951871 - L1MB3 LINE L1 -7 6176 5787 1125 155 5 24 chr11 57831991 57832197 -90951275 - MER57B-int LTR ERV1 -5457 489 288 * 3398 157 42 31 chr11 57832191 57832453 -90951019 - MER57B-int LTR ERV1 -6862 675 417 186 43 0 0 chr11 57832453 57832476 -90950996 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 3398 157 42 31 chr11 57832476 57832881 -90950591 - MER57B-int LTR ERV1 -7120 417 1 2568 162 7 2 chr11 57832881 57833313 -90950159 - MER57B LTR ERV1 0 434 1 1802 289 166 11 chr11 57833314 57833972 -90949500 + L2 LINE L2 1764 2523 -791 1896 245 59 10 chr11 57833973 57834467 -90949005 + LTR40a LTR ERVL 2 519 0 410 318 56 46 chr11 57834488 57834844 -90948628 + L2 LINE L2 2660 3073 -240 4214 36 4 17 chr11 57834850 57835383 -90948089 + L1PA3 LINE L1 5630 6155 0 1041 193 26 48 chr11 57835447 57835675 -90947797 - AluJb SINE Alu -19 293 71 4888 124 64 26 chr11 57835682 57836602 -90946870 - LOR1b-int LTR ERV1 -6963 1157 203 1760 169 62 11 chr11 57836606 57836962 -90946510 - LOR1b-int LTR ERV1 -7744 376 3 1935 213 43 0 chr11 57836964 57837406 -90946066 - LOR1b LTR ERV1 0 461 1 593 204 0 32 chr11 57840468 57840625 -90942847 - L1MA10 LINE L1 0 6334 6183 9220 243 2 5 chr11 57840797 57842916 -90940556 + L1M3e LINE L1 1 2113 -4917 426 363 72 10 chr11 57843104 57843396 -90940076 + L2 LINE L2 2178 2487 -827 246 322 0 0 chr11 57843856 57843943 -90939529 - L1MB3 LINE L1 -459 5711 5625 466 291 9 45 chr11 57844030 57844250 -90939222 - L1MB3 LINE L1 -568 5596 5385 198 0 0 0 chr11 57844285 57844307 -90939165 + (T)n Simple_repeat Simple_repeat 1 22 0 1907 95 13 44 chr11 57844513 57844829 -90938643 - AluSg1 SINE Alu -3 306 1 772 266 77 31 chr11 57844860 57845183 -90938289 + LTR9 LTR ERV1 255 592 -20 226 113 0 113 chr11 57845388 57845450 -90938022 + (TTTTTG)n Simple_repeat Simple_repeat 1 55 0 237 33 0 0 chr11 57846214 57846244 -90937228 + (CA)n Simple_repeat Simple_repeat 2 31 0 218 287 17 96 chr11 57847357 57847472 -90936000 - MIR3 SINE MIR -36 172 67 193 290 80 10 chr11 57847908 57848008 -90935464 - L2 LINE L2 -257 3056 2950 355 246 35 9 chr11 57848008 57848122 -90935350 + Charlie7 DNA MER1_type 26 142 -2470 223 330 106 11 chr11 57848231 57848325 -90935147 + L2 LINE L2 3159 3261 -11 198 286 102 51 chr11 57849517 57849615 -90933857 + MER5A DNA MER1_type 27 129 -60 277 236 118 45 chr11 57849619 57849729 -90933743 + MER5A DNA MER1_type 70 187 -2 187 278 28 42 chr11 57849741 57849813 -90933659 - MIR SINE MIR -60 148 78 209 358 0 0 chr11 57849906 57849973 -90933499 + MIR SINE MIR 126 192 -70 3290 117 10 19 chr11 57851511 57852025 -90931447 + MER9 LTR ERVK 3 511 0 2197 127 0 0 chr11 57852033 57852333 -90931139 + AluSx SINE Alu 1 300 -12 1256 297 39 49 chr11 57852402 57852571 -90930901 + L2 LINE L2 2201 2370 -944 222 37 0 0 chr11 57852571 57852598 -90930874 + (CA)n Simple_repeat Simple_repeat 2 28 0 1256 297 39 49 chr11 57852598 57853045 -90930427 + L2 LINE L2 2370 2811 -503 492 280 16 48 chr11 57854153 57854339 -90929133 - L2 LINE L2 -474 2840 2661 1979 237 59 10 chr11 57854361 57854855 -90928617 - LTR40a LTR ERVL 0 519 2 1956 275 113 12 chr11 57854856 57855547 -90927925 - L2 LINE L2 -791 2523 1763 2632 155 5 2 chr11 57855547 57855980 -90927492 + MER57B LTR ERV1 1 434 0 3458 169 43 5 chr11 57855980 57856385 -90927087 + MER57B-int LTR ERV1 1 442 -7095 270 0 0 0 chr11 57856385 57856415 -90927057 + (TG)n Simple_repeat Simple_repeat 1 30 0 3458 169 43 5 chr11 57856415 57856659 -90926813 + MER57B-int LTR ERV1 442 675 -6862 1225 145 0 24 chr11 57856653 57856860 -90926612 + MER41-int LTR ERV1 288 489 -5457 * 1411 206 25 53 chr11 57857249 57857643 -90925829 + L1MB4 LINE L1 5786 6168 -12 15082 102 11 3 chr11 57857716 57859975 -90923497 + L1PA5 LINE L1 1 2275 -3871 13684 55 0 0 chr11 57859975 57862499 -90920973 + L1PA5 LINE L1 3627 6150 -4 393 305 102 23 chr11 57864011 57864188 -90919284 + MIR SINE MIR 20 210 -52 492 298 6 44 chr11 57864387 57864568 -90918904 + MIR SINE MIR 87 260 -2 1562 193 0 61 chr11 57865269 57865596 -90917876 + AluJb SINE Alu 1 307 -5 254 288 96 16 chr11 57865637 57865762 -90917710 - MIR SINE MIR -26 236 102 320 257 106 9 chr11 57865842 57865955 -90917517 + MIR SINE MIR 108 231 -31 198 0 0 0 chr11 57866963 57866985 -90916487 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 2510 54 3 0 chr11 57866985 57867299 -90916173 - L1PA4 LINE L1 -16 6139 5825 751 52 0 0 chr11 57867299 57867395 -90916077 + L1P2 LINE L1 5556 5651 -504 621 315 74 30 chr11 57867464 57868007 -90915465 - L1MC/D LINE L1 -1987 5821 5255 961 309 103 60 chr11 57868022 57869324 -90914148 - L1MC/D LINE L1 -914 5232 3875 30325 112 14 9 chr11 57869405 57875525 -90907947 - L1PA6 LINE L1 -4 6150 11 1398 169 34 14 chr11 57875748 57876043 -90907429 - L1PA16 LINE L1 -3 6163 5863 1600 181 0 3 chr11 57876043 57876353 -90907119 + L1PA16 LINE L1 5565 5873 -293 555 294 37 76 chr11 57876379 57876815 -90906657 - L1MC/D LINE L1 -2657 3489 3071 442 245 176 31 chr11 57878077 57878236 -90905236 + MER5A DNA MER1_type 7 188 -1 313 363 108 15 chr11 57879240 57879444 -90904028 - L2 LINE L2 -1 3271 3049 190 351 0 0 chr11 57879919 57879996 -90903476 - L2 LINE L2 -227 3045 2969 1539 124 0 27 chr11 57880170 57880395 -90903077 + AluSg/x SINE Alu 91 309 -1 782 281 36 0 chr11 57880498 57880722 -90902750 + MLT1D LTR MaLR 274 505 0 509 242 76 54 chr11 57882936 57883159 -90900313 - L1MC4a LINE L1 -161 5960 5731 790 204 16 11 chr11 57885429 57885615 -90897857 + HERVK LTR ERVK 526 712 -6531 13531 202 16 14 chr11 57885723 57890179 -90893293 + HERVK LTR ERVK 2905 7241 -2 3975 197 22 51 chr11 57890181 57891164 -90892308 + LTR5 LTR ERVK 1 955 -14 656 240 34 39 chr11 57891207 57891386 -90892086 + MIR SINE MIR 8 185 -77 238 371 48 8 chr11 57891706 57891830 -90891642 + L2 LINE L2 3143 3271 -1 22 56 0 0 chr11 57892237 57892273 -90891199 + AT_rich Low_complexity Low_complexity 1 36 0 214 343 111 25 chr11 57892323 57892682 -90890790 - L2 LINE L2 -1211 2103 1714 4141 188 20 35 chr11 57892994 57893872 -90889600 + MER6 DNA MER2_type 1 865 0 406 343 64 23 chr11 57895814 57895986 -90887486 + MER5A DNA MER1_type 6 184 -5 1135 253 30 27 chr11 57896029 57896325 -90887147 + AluJo SINE Alu 3 299 -3 223 289 11 67 chr11 57896396 57896486 -90886986 - MIR SINE MIR -64 144 60 22 35 0 0 chr11 57896935 57896964 -90886508 + AT_rich Low_complexity Low_complexity 1 29 0 17588 180 29 15 chr11 57896967 57900683 -90882789 + L1M1 LINE L1 13 3779 -3786 41579 45 2 1 chr11 57900695 57906832 -90876640 + L1PA3 LINE L1 9 6153 -2 5085 198 13 62 chr11 57906851 57907310 -90876162 + L1M1 LINE L1 3786 4266 -3299 1860 148 6 25 chr11 57907310 57907628 -90875844 + AluSx SINE Alu 1 312 0 5085 198 13 62 chr11 57907628 57908188 -90875284 + L1M1 LINE L1 4266 4852 -2713 1724 169 3 36 chr11 57908188 57908490 -90874982 - AluSx SINE Alu -20 292 1 5085 198 13 62 chr11 57908490 57908739 -90874733 + L1M1 LINE L1 4852 4976 -2589 1933 98 15 0 chr11 57908739 57909013 -90874459 + L1PA7 LINE L1 5874 6151 -3 5085 198 13 62 chr11 57909013 57909205 -90874267 + L1M1 LINE L1 4976 5176 -2389 1976 197 0 0 chr11 57909206 57909592 -90873880 - L1 LINE L1 -2042 4104 3719 251 348 127 6 chr11 57909937 57910095 -90873377 - L2 LINE L2 -711 2603 2427 626 303 24 9 chr11 57910500 57910711 -90872761 - MIR SINE MIR 0 262 49 375 229 110 18 chr11 57910824 57910933 -90872539 - MLT1B LTR MaLR -269 121 3 259 293 116 12 chr11 57911159 57911296 -90872176 + MIR SINE MIR 57 203 -5 447 141 0 0 chr11 57911322 57911393 -90872079 + Tigger2 DNA MER2_type 1 71 -2647 809 250 6 0 chr11 57911428 57911604 -90871868 - MER8 DNA MER2_type -62 177 1 4112 187 31 15 chr11 57911781 57912380 -90871092 - L1MA8 LINE L1 -12 7239 6618 13813 156 11 8 chr11 57912380 57913932 -90869540 - Tigger1 DNA MER2_type 0 2418 849 1803 148 7 27 chr11 57913932 57914298 -90869174 + AluSq SINE Alu 1 360 0 13813 156 11 8 chr11 57914298 57915151 -90868321 - Tigger1 DNA MER2_type -1569 849 1 4112 187 31 15 chr11 57915151 57915482 -90867990 - L1MA8 LINE L1 -633 6618 6294 364 179 21 0 chr11 57915785 57915880 -90867592 - Tigger1 DNA MER2_type -1742 676 580 233 217 0 0 chr11 57916035 57916095 -90867377 + A-rich Low_complexity Low_complexity 1 60 0 9319 211 51 6 chr11 57917588 57920103 -90863369 - L1MA8 LINE L1 -796 6310 3681 2793 246 18 4 chr11 57920105 57921430 -90862042 - L1MA8 LINE L1 -4253 2854 1518 2059 219 43 2 chr11 57922634 57923077 -90860395 + LOR1b LTR ERV1 1 461 0 1953 177 50 8 chr11 57923077 57923438 -90860034 + LOR1b-int LTR ERV1 1 376 -7744 5315 129 79 8 chr11 57923442 57924340 -90859132 + LOR1-int LTR ERV1 203 1164 -6956 885 189 48 66 chr11 57924340 57924568 -90858904 + AluJb SINE Alu 71 294 -18 444 338 29 40 chr11 57924617 57924996 -90858476 - L2 LINE L2 -225 3088 2661 455 312 158 0 chr11 57925018 57925233 -90858239 - LTR40a LTR ERVL 0 519 271 * 866 172 38 0 chr11 57925231 57925388 -90858084 - LTR40a LTR ERVL -355 164 2 1899 298 100 10 chr11 57925389 57926087 -90857385 - L2 LINE L2 -791 2523 1763 2508 172 24 2 chr11 57926087 57926512 -90856960 + MER57B LTR ERV1 1 434 0 3906 167 21 25 chr11 57926512 57927190 -90856282 + MER57B-int LTR ERV1 1 675 -6862 459 171 0 0 chr11 57927184 57927254 -90856218 + MER41-int LTR ERV1 288 357 -5589 * 2955 6 0 0 chr11 57927280 57927595 -90855877 + AluYb8 SINE Alu 1 315 -3 351 260 65 39 chr11 57927702 57927856 -90855616 - LTR1B LTR ERV1 -668 158 1 2080 223 3 10 chr11 57927856 57928242 -90855230 + MER41-int LTR ERV1 1661 2043 -2148 912 288 100 15 chr11 57928279 57928733 -90854739 + MER101B LTR ERV1 24 442 -32 225 0 0 0 chr11 57928837 57928862 -90854610 + (C)n Simple_repeat Simple_repeat 1 25 0 258 32 0 0 chr11 57928893 57928924 -90854548 + (A)n Simple_repeat Simple_repeat 1 31 0 306 285 126 26 chr11 57929269 57929420 -90854052 + MIR SINE MIR 45 210 -52 473 333 14 40 chr11 57929813 57930035 -90853437 + MIR SINE MIR 8 223 -39 1635 189 0 10 chr11 57930772 57931069 -90852403 + AluJo SINE Alu 1 294 -18 279 244 102 39 chr11 57931103 57931230 -90852242 - MIR SINE MIR -26 236 102 474 234 129 35 chr11 57931271 57931442 -90852030 + MIR SINE MIR 48 234 -28 1053 295 73 17 chr11 57932380 57932916 -90850556 - L1MC/D LINE L1 -1988 5820 5255 526 315 120 50 chr11 57932921 57933622 -90849850 - L1MC/D LINE L1 -902 5244 4495 335 271 136 36 chr11 57933679 57934237 -90849235 - L1MC/D LINE L1 -1887 4259 3652 1737 149 28 3 chr11 57934344 57934626 -90848846 - L1PA16 LINE L1 -9 6157 5869 1870 153 0 10 chr11 57934631 57934944 -90848528 + L1PA16 LINE L1 5564 5873 -293 369 277 153 55 chr11 57934968 57935408 -90848064 - L1MC/D LINE L1 -2658 3488 3009 302 273 30 30 chr11 57936209 57936308 -90847164 - LTR34 LTR ERV1 -333 366 268 514 258 147 6 chr11 57936649 57936812 -90846660 + MER5A DNA MER1_type 3 188 -1 239 356 69 29 chr11 57937817 57937991 -90845481 - L2 LINE L2 -1 3271 3091 688 187 77 39 chr11 57939665 57939847 -90843625 - MLT1A2 LTR MaLR -166 208 20 1773 228 54 85 chr11 57940389 57940637 -90842835 + LTR9 LTR ERV1 1 255 -357 1760 149 0 47 chr11 57940637 57940959 -90842513 - AluSg1 SINE Alu -2 307 1 1773 228 54 85 chr11 57940959 57941342 -90842130 + LTR9 LTR ERV1 255 612 0 228 67 0 0 chr11 57942370 57942400 -90841072 + (CA)n Simple_repeat Simple_repeat 2 31 0 275 270 15 90 chr11 57943517 57943650 -90839822 - MIR SINE MIR -36 172 43 351 262 74 8 chr11 57944144 57944266 -90839206 + Charlie7 DNA MER1_type 15 144 -2468 247 364 100 0 chr11 57944355 57944465 -90839007 + L2 LINE L2 3141 3261 -11 268 320 16 39 chr11 57945616 57945744 -90837728 + MER5A DNA MER1_type 54 178 -11 291 272 48 29 chr11 57945775 57945878 -90837594 + MER5A DNA MER1_type 51 155 -34 209 182 45 121 chr11 57945908 57945974 -90837498 - MIR SINE MIR -60 148 88 229 303 182 0 chr11 57946045 57946144 -90837328 + MIR SINE MIR 76 192 -70 1243 229 10 26 chr11 57947745 57948050 -90835422 + AluSx SINE Alu 1 300 -2 912 311 39 31 chr11 57948296 57948685 -90834787 + L2 LINE L2 2420 2811 -503 222 231 77 58 chr11 57951105 57951209 -90832263 - MER5A DNA MER1_type -37 152 47 976 261 86 24 chr11 57951332 57951749 -90831723 - L1MEc LINE L1 -5909 487 45 2586 279 41 24 chr11 57951757 57952634 -90830838 - L1MEc LINE L1 -5456 940 49 489 292 112 30 chr11 57953021 57953254 -90830218 - MIR SINE MIR 0 262 11 1115 205 120 18 chr11 57953372 57953719 -90829753 + L1MA10 LINE L1 5911 6289 -45 598 204 36 122 chr11 57954579 57954609 -90828863 - MER3 DNA MER1_type -6 203 172 2326 84 0 3 chr11 57954609 57954908 -90828564 - AluY SINE Alu -13 298 1 598 204 36 122 chr11 57954908 57955098 -90828374 - MER3 DNA MER1_type -37 172 2 3149 227 52 38 chr11 57955335 57956559 -90826913 - L1ME1 LINE L1 0 6166 4937 407 171 12 0 chr11 57956603 57956685 -90826787 - L1ME1 LINE L1 -1587 4559 4477 3523 180 0 7 chr11 57957240 57957811 -90825661 - HERV3 LTR ERV1 -2675 5751 5185 10684 207 55 6 chr11 57959121 57961630 -90821842 - L1 LINE L1 -796 6310 3681 10131 251 12 6 chr11 57961632 57964475 -90818997 - L1 LINE L1 -4253 2854 1 736 209 4 96 chr11 57964566 57964796 -90818676 + L1MA10 LINE L1 6126 6334 0 216 297 63 54 chr11 57965176 57965287 -90818185 + MIR SINE MIR 19 130 -78 1945 208 41 41 chr11 57967846 57968307 -90815165 + LOR1b LTR ERV1 1 461 0 1869 183 50 8 chr11 57968307 57968668 -90814804 + LOR1b-int LTR ERV1 1 376 -7744 4967 138 90 8 chr11 57968672 57969561 -90813911 + LOR1-int LTR ERV1 203 1164 -6956 960 178 35 57 chr11 57969561 57969791 -90813681 + AluJo SINE Alu 71 295 -17 457 359 32 21 chr11 57969840 57970219 -90813253 - L2 LINE L2 -225 3088 2661 496 284 163 5 chr11 57970241 57970456 -90813016 - LTR40a LTR ERVL 0 519 271 * 888 160 45 0 chr11 57970454 57970610 -90812862 - LTR40a LTR ERVL -355 164 2 1916 302 100 11 chr11 57970611 57971310 -90812162 - L2 LINE L2 -791 2523 1763 2712 161 14 2 chr11 57971310 57971739 -90811733 + MER57B LTR ERV1 1 434 0 3926 164 21 25 chr11 57971739 57972417 -90811055 + MER57B-int LTR ERV1 1 675 -6862 435 174 0 0 chr11 57972411 57972480 -90810992 + MER41-int LTR ERV1 288 356 -5590 * 302 291 126 26 chr11 57972840 57972991 -90810481 + MIR SINE MIR 45 210 -52 543 313 13 44 chr11 57973385 57973612 -90809860 + MIR SINE MIR 8 227 -35 1640 188 0 10 chr11 57974339 57974637 -90808835 + AluJo SINE Alu 1 295 -17 251 283 100 17 chr11 57974671 57974791 -90808681 - MIR SINE MIR -26 236 107 520 222 129 35 chr11 57974839 57975010 -90808462 + MIR SINE MIR 48 234 -28 1040 305 65 17 chr11 57975968 57976509 -90806963 - L1MC/D LINE L1 -1987 5821 5255 842 313 101 61 chr11 57976514 57977658 -90805814 - L1MC/D LINE L1 -902 5244 4056 342 162 180 36 chr11 57977904 57978015 -90805457 - L1P LINE L1 -2368 3778 3652 1694 160 28 3 chr11 57978122 57978404 -90805068 - L1PA16 LINE L1 -9 6157 5869 1914 148 3 3 chr11 57978409 57978719 -90804753 + L1PA16 LINE L1 5564 5873 -293 452 302 47 64 chr11 57978747 57979171 -90804301 - L1MC/D LINE L1 -2659 3487 3071 322 230 76 48 chr11 57979959 57980122 -90803350 - LTR34 LTR ERV1 -240 366 238 527 209 172 31 chr11 57980463 57980626 -90802846 + MER5A DNA MER1_type 3 188 -1 243 351 69 29 chr11 57981631 57981805 -90801667 - L2 LINE L2 -1 3271 3091 189 381 68 8 chr11 57982303 57982421 -90801051 - L2 LINE L2 -210 3062 2938 669 191 93 36 chr11 57983482 57983676 -90799796 - MLT1A2 LTR MaLR -166 208 4 1657 221 67 85 chr11 57984212 57984450 -90799022 + LTR9 LTR ERV1 1 242 -370 1378 138 0 88 chr11 57984450 57984768 -90798704 - AluSg1 SINE Alu -19 290 1 1657 221 67 85 chr11 57984768 57985152 -90798320 + LTR9 LTR ERV1 242 612 0 327 25 0 0 chr11 57986182 57986222 -90797250 + (CA)n Simple_repeat Simple_repeat 2 41 0 21 36 0 0 chr11 57986750 57986778 -90796694 + AT_rich Low_complexity Low_complexity 1 28 0 201 222 0 32 chr11 57987662 57987725 -90795747 - L2 LINE L2 -94 3219 3159 292 259 0 12 chr11 57987979 57988064 -90795408 + Charlie7 DNA MER1_type 35 118 -2494 259 355 100 0 chr11 57988171 57988281 -90795191 + L2 LINE L2 3141 3261 -11 271 333 8 39 chr11 57989432 57989561 -90793911 + MER5A DNA MER1_type 54 178 -11 254 265 51 31 chr11 57989598 57989696 -90793776 + MER5A DNA MER1_type 56 155 -34 182 191 44 147 chr11 57989726 57989794 -90793678 - MIR SINE MIR -60 148 88 228 293 182 0 chr11 57989865 57989964 -90793508 + MIR SINE MIR 76 192 -70 2045 142 0 0 chr11 57991543 57991839 -90791633 + AluSx SINE Alu 1 296 -16 958 303 77 28 chr11 57991907 57991986 -90791486 + L2 LINE L2 2279 2353 -961 198 0 0 0 chr11 57991986 57992008 -90791464 + (CA)n Simple_repeat Simple_repeat 2 23 0 958 303 77 28 chr11 57992008 57992436 -90791036 + L2 LINE L2 2353 2811 -503 305 258 126 106 chr11 57993283 57993585 -90789887 + L1M2 LINE L1 463 770 -6079 217 224 82 61 chr11 57994858 57994956 -90788516 - MER5A DNA MER1_type -37 152 53 885 249 171 23 chr11 57995085 57995424 -90788048 - L1MEc LINE L1 -5909 487 83 204 97 0 0 chr11 57995424 57995455 -90788017 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 885 249 171 23 chr11 57995455 57995501 -90787971 - L1MEc LINE L1 -6313 83 45 2791 267 45 26 chr11 57995509 57996396 -90787076 - L1MEc LINE L1 -5456 940 37 560 275 102 34 chr11 57996765 57997001 -90786471 - MIR SINE MIR 0 262 11 1253 206 104 6 chr11 57997141 57997467 -90786005 + L1MA10 LINE L1 5932 6289 -45 732 183 58 91 chr11 57998327 57998535 -90784937 - MER3 DNA MER1_type -7 202 2 3236 219 58 44 chr11 57998772 57999996 -90783476 - L1ME1 LINE L1 0 6166 4937 464 144 22 0 chr11 58000027 58000117 -90783355 - L1ME1 LINE L1 -1578 4568 4477 212 302 234 29 chr11 58000710 58001094 -90782378 - L2 LINE L2 -42 3271 2809 208 265 59 108 chr11 58001373 58001475 -90781997 + L2 LINE L2 3212 3308 -5 * 674 309 108 24 chr11 58001459 58001828 -90781644 - L2 LINE L2 -2 3311 2912 739 227 55 40 chr11 58002237 58002572 -90780900 - LTR35 LTR ERV1 0 675 350 296 317 92 7 chr11 58002642 58002784 -90780688 - LTR35 LTR ERV1 -464 154 1 503 201 201 0 chr11 58003478 58003617 -90779855 + MER5A DNA MER1_type 1 167 -22 258 143 0 79 chr11 58004347 58004410 -90779062 - MIR SINE MIR -147 115 58 1772 176 45 49 chr11 58004589 58005089 -90778383 - MER51A LTR ERV1 0 634 1 1356 249 37 21 chr11 58005261 58005691 -90777781 - L1M4 LINE L1 -1902 4244 3808 314 113 132 0 chr11 58005702 58005755 -90777717 - L1M4 LINE L1 -2413 3733 3674 2024 234 88 13 chr11 58005768 58006324 -90777148 - L1MEc LINE L1 -5761 635 38 662 320 65 53 chr11 58006452 58007037 -90776435 + L1ME LINE L1 3979 4570 -1576 636 136 18 9 chr11 58007127 58007237 -90776235 + MLT1A1 LTR MaLR 1 111 -254 1542 190 19 92 chr11 58007275 58007690 -90775782 - MLT1B LTR MaLR -5 385 1 848 292 113 7 chr11 58007698 58008365 -90775107 + L1ME LINE L1 4860 5607 -557 337 289 21 70 chr11 58008447 58008589 -90774883 + L1ME LINE L1 5625 5759 -411 2460 91 0 0 chr11 58008668 58008977 -90774495 + AluSg1 SINE Alu 1 309 0 440 364 72 10 chr11 58009326 58009617 -90773855 - L2 LINE L2 -828 2486 2178 21 0 0 0 chr11 58009894 58009915 -90773557 + AT_rich Low_complexity Low_complexity 1 21 0 589 283 97 53 chr11 58010023 58010486 -90772986 + L1ME4a LINE L1 5369 5833 -288 607 232 92 0 chr11 58010598 58010740 -90772732 - L1M4 LINE L1 -1139 5007 4853 25 0 0 0 chr11 58010786 58010811 -90772661 + AT_rich Low_complexity Low_complexity 1 25 0 6482 99 21 2 chr11 58013149 58014203 -90769269 + L1PA15 LINE L1 5080 6157 -8 794 266 158 23 chr11 58015337 58015735 -90767737 - MLT1J LTR MaLR -35 476 25 304 293 35 0 chr11 58016263 58016379 -90767093 - L1ME1 LINE L1 -4 6162 6043 * 860 230 109 34 chr11 58016361 58016774 -90766698 - L1MC5 LINE L1 -246 7715 7272 22 0 0 0 chr11 58016841 58016863 -90766609 + AT_rich Low_complexity Low_complexity 1 22 0 2248 125 8 28 chr11 58017038 58017308 -90766164 - THE1C-int LTR MaLR -923 657 383 2631 126 8 8 chr11 58017308 58017672 -90765800 + THE1B LTR MaLR 1 364 0 11118 104 12 47 chr11 58017672 58019309 -90764163 + THE1B-int LTR MaLR 1 1580 0 2742 111 3 3 chr11 58019311 58019671 -90763801 + THE1B LTR MaLR 3 362 -2 2248 125 8 28 chr11 58019671 58020003 -90763469 - THE1C-int LTR MaLR -1197 383 3 2349 139 35 11 chr11 58020005 58020371 -90763101 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr11 58021680 58021701 -90761771 + AT_rich Low_complexity Low_complexity 1 21 0 194 379 58 11 chr11 58021707 58021794 -90761678 + L2 LINE L2 3142 3232 -40 23 68 0 0 chr11 58022464 58022508 -90760964 + AT_rich Low_complexity Low_complexity 1 44 0 3628 195 35 53 chr11 58023096 58024069 -90759403 + LTR5 LTR ERVK 1 955 -14 274 253 51 0 chr11 58025110 58025189 -90758283 + L2 LINE L2 3230 3312 -1 276 237 0 13 chr11 58025493 58025569 -90757903 + MIR SINE MIR 132 206 -56 249 83 0 0 chr11 58025927 58025963 -90757509 + (TA)n Simple_repeat Simple_repeat 1 36 0 202 222 0 0 chr11 58026593 58026638 -90756834 + A-rich Low_complexity Low_complexity 4 48 0 1061 145 0 2 chr11 58026741 58027004 -90756468 + AluSx SINE Alu 2 312 0 4261 110 25 3 chr11 58027768 58028396 -90755076 - L1PA13 LINE L1 -5 6158 5517 247 260 0 0 chr11 58028502 58028552 -90754920 + polypurine Low_complexity Low_complexity 4 53 0 824 112 28 17 chr11 58028555 58028733 -90754739 + GA-rich Low_complexity Low_complexity 1 180 0 224 71 0 0 chr11 58028733 58028761 -90754711 + (GA)n Simple_repeat Simple_repeat 1 28 0 1732 208 51 18 chr11 58030516 58030969 -90752503 + MER110A LTR ERV1 1 468 0 22 56 0 0 chr11 58031732 58031768 -90751704 + GC_rich Low_complexity Low_complexity 1 36 0 315 284 0 0 chr11 58032005 58032132 -90751340 + GA-rich Low_complexity Low_complexity 2 128 0 278 176 33 11 chr11 58032777 58032868 -90750604 + (TA)n Simple_repeat Simple_repeat 1 93 0 1890 136 3 25 chr11 58032901 58033187 -90750285 - AluSx SINE Alu -30 282 3 427 231 29 0 chr11 58033223 58033327 -90750145 - MIR SINE MIR -115 147 41 221 295 48 48 chr11 58033369 58033474 -90749998 - MIR3 SINE MIR -46 162 58 315 257 209 14 chr11 58033510 58033720 -90749752 + L1MC5 LINE L1 7327 7577 -384 861 252 31 13 chr11 58033894 58034120 -90749352 - MER87 LTR ERV1 -52 489 260 288 200 90 10 chr11 58034501 58034601 -90748871 + L1MC5 LINE L1 7818 7925 -36 467 265 48 14 chr11 58034622 58034769 -90748703 + MIR SINE MIR 79 230 -32 241 312 54 0 chr11 58035248 58035341 -90748131 + MIR SINE MIR 45 142 -120 1894 179 9 6 chr11 58035789 58036119 -90747353 + MER2 DNA MER2_type 2 332 -13 21 36 0 0 chr11 58036488 58036516 -90746956 + AT_rich Low_complexity Low_complexity 1 28 0 188 268 14 42 chr11 58037160 58037231 -90746241 - MIR SINE MIR -27 235 167 2257 112 0 0 chr11 58037962 58038256 -90745216 - AluSq SINE Alu -19 294 1 247 176 220 0 chr11 58040406 58040497 -90742975 - MIR SINE MIR 0 262 152 2183 107 0 42 chr11 58040509 58040818 -90742654 - AluSg SINE Alu -14 296 1 1051 166 51 95 chr11 58041263 58041516 -90741956 + MER4B-int LTR ERV1 5840 6081 -677 925 90 0 62 chr11 58041795 58041940 -90741532 + LTR47A LTR ERVL 317 452 0 2569 185 200 53 chr11 58041940 58042679 -90740793 - L1MC3 LINE L1 -1025 6760 5913 1803 220 16 31 chr11 58042687 58043110 -90740362 - MER82 DNA MER2_type -236 417 1 1601 216 38 45 chr11 58043631 58044079 -90739393 + MLT1C LTR MaLR 1 445 -22 332 168 44 106 chr11 58044079 58044192 -90739280 - MLT1C LTR MaLR -39 428 323 1422 236 99 21 chr11 58044359 58044791 -90738681 + MERVL LTR ERVL 924 1389 -4141 613 244 87 73 chr11 58045487 58045762 -90737710 + MERVL LTR ERVL 2693 2971 -2559 1677 325 60 27 chr11 58046128 58047309 -90736163 + MERVL LTR ERVL 2295 3517 -1968 1455 241 39 18 chr11 58047326 58047716 -90735756 + MLT1D LTR MaLR 22 419 -86 23 0 0 0 chr11 58048395 58048418 -90735054 + AT_rich Low_complexity Low_complexity 1 23 0 599 278 5 0 chr11 58048529 58048720 -90734752 - L1M4 LINE L1 -1538 4608 4417 1072 215 105 0 chr11 58048720 58048939 -90734533 - MER77 LTR ERV1 -178 427 186 3747 245 53 43 chr11 58048939 58049492 -90733980 + L1MD1 LINE L1 2343 2889 -3257 2034 74 0 19 chr11 58049492 58049761 -90733711 - AluY SINE Alu -1 310 47 3747 245 53 43 chr11 58049761 58050515 -90732957 + L1MD1 LINE L1 2889 3663 -2483 1021 186 0 5 chr11 58050533 58050727 -90732745 - MER57A LTR ERV1 0 403 211 1077 76 38 6 chr11 58050757 58050914 -90732558 + L1MA5A LINE L1 6126 6287 -10 1195 154 27 91 chr11 58050942 58051222 -90732250 - MER57A LTR ERV1 -143 291 1 989 158 30 0 chr11 58051281 58051446 -90732026 - FRAM SINE Alu -6 170 1 4895 200 54 65 chr11 58051452 58051893 -90731579 + L1MD1 LINE L1 3742 4186 -2056 2671 52 0 0 chr11 58051893 58052203 -90731269 + AluY SINE Alu 1 310 -1 4895 200 54 65 chr11 58052203 58053313 -90730159 + L1MD1 LINE L1 4186 5233 -1009 1666 183 0 11 chr11 58053313 58053619 -90729853 - AluJb SINE Alu 0 303 1 4895 200 54 65 chr11 58053619 58054605 -90728867 + L1MD1 LINE L1 5233 6228 -14 1163 249 83 30 chr11 58054605 58054978 -90728494 + MLT1G1 LTR MaLR 201 593 -2 2300 102 3 0 chr11 58055261 58055566 -90727906 + AluSq SINE Alu 1 306 -7 34 24 0 0 chr11 58055649 58055690 -90727782 + AT_rich Low_complexity Low_complexity 1 41 0 5277 139 39 7 chr11 58055792 58056649 -90726823 - HSMAR2 DNA Mariner 0 1302 419 1006 80 13 20 chr11 58056650 58056801 -90726671 - HSMAR2 DNA Mariner -1151 151 2 216 97 0 0 chr11 58056806 58056837 -90726635 + (TG)n Simple_repeat Simple_repeat 2 32 0 313 314 65 8 chr11 58057408 58057532 -90725940 + MIR SINE MIR 31 161 -101 25 0 0 0 chr11 58061327 58061352 -90722120 + GC_rich Low_complexity Low_complexity 1 25 0 620 279 58 0 chr11 58064888 58065084 -90718388 - MIR SINE MIR -28 234 30 292 301 49 24 chr11 58065079 58065202 -90718270 - L2 LINE L2 0 3313 3188 * 292 253 110 55 chr11 58066487 58066669 -90716803 - L2 LINE L2 -1 3312 3121 191 253 116 11 chr11 58066773 58066868 -90716604 - L2 LINE L2 -308 2964 2860 186 261 43 14 chr11 58067173 58067242 -90716230 - L2 LINE L2 -1 3271 3201 1759 174 150 84 chr11 58067886 58068479 -90714993 + LTR27 LTR ERV1 3 634 -2 312 83 0 0 chr11 58068534 58068582 -90714890 + (CA)n Simple_repeat Simple_repeat 2 49 0 417 232 232 5 chr11 58068649 58068847 -90714625 - MIR SINE MIR 0 262 20 289 341 42 0 chr11 58071283 58071425 -90712047 + MIR SINE MIR 46 192 -68 851 183 0 0 chr11 58071431 58071568 -90711904 + FRAM SINE Alu 1 137 -39 555 240 154 23 chr11 58071602 58071823 -90711649 - MIR SINE MIR -10 252 3 610 252 80 9 chr11 58072881 58073107 -90710365 + MIR SINE MIR 15 256 -6 341 240 112 48 chr11 58075255 58075380 -90708092 - MIR3 SINE MIR -46 162 30 414 250 33 17 chr11 58075863 58076010 -90707462 + MIR SINE MIR 50 198 -64 304 263 25 0 chr11 58076103 58076183 -90707289 + L2 LINE L2 3232 3313 0 183 277 36 12 chr11 58076542 58076625 -90706847 + MER5A DNA MER1_type 1 85 -104 665 260 170 25 chr11 58076722 58077277 -90706195 - L2 LINE L2 -1 3312 2673 226 226 62 0 chr11 58077979 58078085 -90705387 + MIR SINE MIR 32 144 -69 213 279 192 10 chr11 58078245 58078349 -90705123 + MIR SINE MIR 34 156 -106 182 324 0 0 chr11 58078632 58078703 -90704769 + MIR SINE MIR 175 245 -17 483 246 8 8 chr11 58078953 58079083 -90704389 - MIR SINE MIR -50 212 83 1051 150 82 24 chr11 58080115 58080322 -90703150 + MER20 DNA MER1_type 1 219 0 352 274 106 8 chr11 58081795 58081923 -90701549 + MIR SINE MIR 35 172 -54 230 281 0 0 chr11 58082808 58082865 -90700607 + MIR SINE MIR 97 153 -109 702 282 30 5 chr11 58083177 58083379 -90700093 - MIR SINE MIR -48 214 8 241 279 38 13 chr11 58083388 58083467 -90700005 - MER5A DNA MER1_type -75 114 34 1341 242 81 8 chr11 58084169 58084562 -90698910 - L1MC4a LINE L1 -1804 6004 5583 471 268 66 35 chr11 58084792 58084990 -90698482 - L2 LINE L2 -2 3311 3108 2741 128 52 2 chr11 58085193 58085654 -90697818 + MER1A DNA MER1_type 1 529 0 201 303 109 25 chr11 58087811 58087930 -90695542 + MIR3 SINE MIR 13 141 -67 229 304 222 18 chr11 58087964 58088135 -90695337 - MIR SINE MIR -10 252 47 2186 138 33 25 chr11 58088624 58088985 -90694487 - THE1B LTR MaLR 0 364 1 242 222 0 0 chr11 58089066 58089120 -90694352 + MER5A DNA MER1_type 18 71 -118 2063 170 5 35 chr11 58089590 58089966 -90693506 - MLT1A1 LTR MaLR 0 365 1 575 256 40 30 chr11 58090898 58091097 -90692375 + MIR SINE MIR 21 221 -41 283 205 31 102 chr11 58091259 58091386 -90692086 + MIR SINE MIR 12 129 -133 5208 141 62 7 chr11 58091406 58092315 -90691157 - Tigger3b DNA MER2_type 0 1231 273 550 198 0 21 chr11 58092316 58092412 -90691060 - Tigger3b DNA MER2_type -1133 98 5 401 289 68 16 chr11 58092947 58093171 -90690301 - MIR SINE MIR -10 252 19 214 184 0 0 chr11 58094448 58094486 -90688986 + (TG)n Simple_repeat Simple_repeat 1 38 0 237 65 0 0 chr11 58095137 58095168 -90688304 + (TA)n Simple_repeat Simple_repeat 2 32 0 321 26 0 0 chr11 58098372 58098410 -90685062 + (TG)n Simple_repeat Simple_repeat 2 39 0 426 39 0 0 chr11 58098471 58098523 -90684949 + (TG)n Simple_repeat Simple_repeat 2 53 0 1953 164 13 0 chr11 58103024 58103329 -90680143 - 7SLRNA srpRNA srpRNA -11 309 1 292 247 132 34 chr11 58103819 58103961 -90679511 + L1ME4a LINE L1 5713 5840 -281 3558 161 46 11 chr11 58103961 58104575 -90678897 - MER41B LTR ERV1 0 635 1 292 247 132 34 chr11 58104575 58104754 -90678718 + L1ME4a LINE L1 5840 6099 -22 1911 129 0 18 chr11 58104883 58105163 -90678309 + AluSx SINE Alu 1 275 -37 201 39 0 0 chr11 58105172 58105198 -90678274 + (CAAA)n Simple_repeat Simple_repeat 4 29 0 658 179 43 0 chr11 58106401 58106518 -90676954 + FLAM_A SINE Alu 13 134 -8 510 17 0 0 chr11 58106520 58106579 -90676893 + (GGAA)n Simple_repeat Simple_repeat 4 62 0 1742 11 0 5 chr11 58106679 58106868 -90676604 - AluYb8 SINE Alu -130 188 1 250 296 0 104 chr11 58106951 58107076 -90676396 - L3 LINE CR1 -135 1442 1331 598 237 15 0 chr11 58107213 58107344 -90676128 + MLT1E1 LTR MaLR 520 652 -2 265 284 12 12 chr11 58107460 58107541 -90675931 - L2 LINE L2 -4 3268 3188 187 333 10 50 chr11 58109976 58110075 -90673397 - L2 LINE L2 -527 2787 2693 308 347 91 0 chr11 58111071 58111247 -90672225 - L3 LINE CR1 -1 1576 1385 213 330 9 70 chr11 58112048 58112163 -90671309 - MIR3 SINE MIR -48 160 53 229 312 28 37 chr11 58112614 58112723 -90670749 - L2 LINE L2 0 3272 3165 2098 128 3 13 chr11 58113002 58113306 -90670166 - AluSx SINE Alu -11 301 1 1850 146 44 6 chr11 58113336 58113652 -90669820 - MER51B LTR ERV1 0 377 50 560 105 147 11 chr11 58113664 58113759 -90669713 - MER51A LTR ERV1 -526 108 1 1780 150 11 0 chr11 58113760 58114033 -90669439 - MER51A-int LTR ERV1 0 7816 7541 1829 70 0 0 chr11 58114038 58114253 -90669219 + AluY SINE Alu 1 215 -96 436 309 60 60 chr11 58114255 58114553 -90668919 - MER51A-int LTR ERV1 -457 6072 5860 * 1271 112 0 11 chr11 58114538 58114726 -90668746 - MER51A-int LTR ERV1 -2125 5995 5810 25110 129 28 14 chr11 58114727 58118952 -90664520 - MER51A-int LTR ERV1 -2597 5523 1239 24443 168 24 25 chr11 58118965 58125417 -90658055 - L1PA10 LINE L1 -10 6473 10 5369 111 69 2 chr11 58125429 58126279 -90657193 - MER51A-int LTR ERV1 -6871 1249 343 2204 175 17 76 chr11 58126283 58126857 -90656615 - MER51A-int LTR ERV1 -3776 509 337 464 66 66 110 chr11 58126870 58126961 -90656511 - MER51A-int LTR ERV1 -7729 87 1 886 127 121 12 chr11 58126961 58127127 -90656345 - MER51A LTR ERV1 0 634 451 1102 93 25 0 chr11 58127127 58127288 -90656184 - AluSg/x SINE Alu 0 310 146 427 257 75 40 chr11 58128130 58128350 -90655122 - L1MC4a LINE L1 -565 5769 5694 1857 110 92 0 chr11 58128371 58128653 -90654819 - AluSg SINE Alu -2 308 1 203 263 105 21 chr11 58128789 58128884 -90654588 - MIR SINE MIR -52 210 108 224 336 29 36 chr11 58128886 58129023 -90654449 - MIR SINE MIR -55 207 72 2335 66 0 13 chr11 58129315 58129617 -90653855 - AluY SINE Alu -9 302 5 2035 110 0 10 chr11 58130191 58130491 -90652981 - AluSg SINE Alu -13 297 1 2327 67 0 3 chr11 58130550 58130849 -90652623 - AluY SINE Alu -13 298 1 23 33 0 0 chr11 58130849 58130879 -90652593 + AT_rich Low_complexity Low_complexity 1 30 0 401 214 0 71 chr11 58132194 58132292 -90651180 + MLT1D LTR MaLR 1 91 -414 598 200 197 8 chr11 58132298 58132462 -90651010 + MLT1D LTR MaLR 212 389 -78 499 159 6 38 chr11 58132866 58132892 -90650580 + (TCTCTG)n Simple_repeat Simple_repeat 1 26 -780 2575 146 14 25 chr11 58132892 58133323 -90650149 + MSTB LTR MaLR 1 426 0 499 159 6 38 chr11 58133323 58133699 -90649773 + (TCTCTG)n Simple_repeat Simple_repeat 26 806 0 232 352 29 9 chr11 58133981 58134086 -90649386 - MIR3 SINE MIR -38 170 64 350 265 183 31 chr11 58134552 58134680 -90648792 - MIR3 SINE MIR -48 160 11 322 238 57 19 chr11 58135255 58135360 -90648112 + L1MEd LINE L1 92 200 -5919 364 368 0 17 chr11 58135667 58135841 -90647631 + L1MEd LINE L1 600 770 -5349 571 250 80 69 chr11 58135931 58136119 -90647353 - MIR3 SINE MIR 0 208 19 294 300 107 13 chr11 58136952 58137102 -90646370 - L2 LINE L2 -1 3312 3149 939 137 60 22 chr11 58137587 58137769 -90645703 - MER53 DNA DNA 0 189 1 249 358 63 32 chr11 58137942 58138132 -90645340 - L2 LINE L2 -177 3095 2900 449 231 139 40 chr11 58138773 58138946 -90644526 + L3 LINE CR1 1388 1577 0 766 254 57 5 chr11 58138958 58139167 -90644305 + MER58A DNA MER1_type 4 223 -1 213 351 77 60 chr11 58139455 58139623 -90643849 - MIR SINE MIR -6 256 86 394 298 8 0 chr11 58140498 58140619 -90642853 + MER117 DNA MER1_type 59 180 -17 270 71 18 36 chr11 58140652 58140708 -90642764 + (TTTTC)n Simple_repeat Simple_repeat 4 58 0 549 0 0 0 chr11 58140708 58140769 -90642703 + (TTCC)n Simple_repeat Simple_repeat 4 64 0 624 183 157 25 chr11 58140892 58141089 -90642383 + L1MB8 LINE L1 5955 6177 -1 321 93 0 0 chr11 58141719 58141773 -90641699 + (TATG)n Simple_repeat Simple_repeat 2 55 0 1694 173 0 3 chr11 58141773 58142056 -90641416 - AluSx SINE Alu -26 286 5 198 0 0 0 chr11 58142548 58142570 -90640902 + (T)n Simple_repeat Simple_repeat 1 22 0 183 42 0 0 chr11 58143880 58143904 -90639568 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2009 92 0 27 chr11 58144275 58144567 -90638905 + AluSc SINE Alu 21 304 -5 329 337 62 17 chr11 58144604 58144782 -90638690 + L1MEd LINE L1 2 187 -5932 557 207 0 37 chr11 58145257 58145392 -90638080 + L1MB7 LINE L1 5754 5883 -301 440 326 69 28 chr11 58145524 58145742 -90637730 - L1MEd LINE L1 -5448 671 445 2039 123 0 25 chr11 58146162 58146478 -90636994 - AluSx SINE Alu -2 310 3 213 178 0 0 chr11 58146721 58146766 -90636706 + T-rich Low_complexity Low_complexity 1 45 0 809 141 0 7 chr11 58147014 58147149 -90636323 + AluJb SINE Alu 170 303 -9 1262 180 32 42 chr11 58147573 58147856 -90635616 - AluJo SINE Alu -3 309 30 573 256 146 63 chr11 58148754 58148995 -90634477 + L1ME4a LINE L1 5572 5792 -329 771 176 0 22 chr11 58148995 58149131 -90634341 + FLAM_A SINE Alu 1 133 0 573 256 146 63 chr11 58149131 58149397 -90634075 + L1ME4a LINE L1 5792 6121 0 380 280 95 24 chr11 58151337 58151505 -90631967 - MIR3 SINE MIR -20 188 9 336 342 70 0 chr11 58151927 58152041 -90631431 + MIR SINE MIR 61 182 -80 258 32 0 0 chr11 58152999 58153030 -90630442 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 220 311 190 28 chr11 58153066 58153355 -90630117 - L2 LINE L2 -82 3190 2855 218 278 52 41 chr11 58153653 58153750 -90629722 + MIR SINE MIR 21 118 -90 428 328 69 5 chr11 58154348 58154552 -90628920 + MIR SINE MIR 25 241 -21 191 310 35 11 chr11 58154905 58154992 -90628480 + MIR SINE MIR 58 146 -62 1679 184 3 3 chr11 58154996 58155301 -90628171 + AluJb SINE Alu 1 305 -7 241 249 106 40 chr11 58155793 58155928 -90627544 + MIR SINE MIR 17 160 -68 1635 162 16 16 chr11 58156399 58156708 -90626764 + AluJo SINE Alu 1 309 -3 1478 66 5 15 chr11 58158017 58158213 -90625259 + AluY SINE Alu 99 292 -19 295 304 35 35 chr11 58158574 58158689 -90624783 - MER5A DNA MER1_type -28 161 47 223 231 19 0 chr11 58159115 58159167 -90624305 - L2 LINE L2 -73 3240 3188 1078 136 146 19 chr11 58159228 58159434 -90624038 - MLT1A1 LTR MaLR 0 365 134 820 144 0 8 chr11 58159436 58159561 -90623911 + AluJb SINE Alu 1 124 -188 431 274 54 54 chr11 58160106 58160365 -90623107 + HAL1 LINE L1 1277 1535 -972 472 301 67 67 chr11 58160876 58160991 -90622481 + L1M4 LINE L1 2169 2283 -3863 1600 175 3 16 chr11 58160991 58161299 -90622173 + AluJo SINE Alu 1 304 -8 472 301 67 67 chr11 58161299 58161528 -90621944 + L1M4 LINE L1 2282 2513 -3633 396 198 113 19 chr11 58161538 58161644 -90621828 + MIR SINE MIR 28 143 -119 281 267 27 0 chr11 58161818 58161893 -90621579 + MIR SINE MIR 98 174 -88 305 344 75 12 chr11 58162148 58162308 -90621164 - MIR SINE MIR -65 197 28 233 190 35 17 chr11 58162339 58162397 -90621075 - MARNA DNA Mariner -433 153 95 208 121 0 0 chr11 58162503 58162536 -90620936 + (CA)n Simple_repeat Simple_repeat 1 33 0 193 224 35 17 chr11 58163763 58163821 -90619651 + MIR SINE MIR 55 113 -95 591 232 27 51 chr11 58164256 58164453 -90619019 + MER61D LTR ERV1 339 501 0 8904 211 29 16 chr11 58164468 58166150 -90617322 + MER52-int LTR ERV1 1824 3527 -3564 1975 116 0 20 chr11 58166150 58166453 -90617019 + AluSg SINE Alu 14 310 0 43941 77 9 5 chr11 58166580 58169305 -90614167 - HERVL-A1 LTR ERVL -55 5599 2886 2143 118 0 16 chr11 58169305 58169619 -90613853 + AluSx SINE Alu 1 309 -3 43941 77 9 5 chr11 58169619 58172470 -90611002 - HERVL-A1 LTR ERVL -2768 2886 1 1628 104 79 4 chr11 58172470 58172710 -90610762 - MLT2A1 LTR ERVL 0 444 187 1165 149 27 11 chr11 58172833 58173021 -90610451 + MER52-int LTR ERV1 5252 5442 -1649 1965 159 12 18 chr11 58173022 58173349 -90610123 + MER52-int LTR ERV1 5548 5872 -1219 249 33 0 0 chr11 58176181 58176211 -90607261 + (TG)n Simple_repeat Simple_repeat 1 30 0 1508 175 62 7 chr11 58180884 58181176 -90602296 - 7SLRNA srpRNA srpRNA -10 310 3 3943 112 12 51 chr11 58181814 58182299 -90601173 - MER41B LTR ERV1 0 635 181 1923 154 6 10 chr11 58182299 58182611 -90600861 - AluSx SINE Alu -1 311 1 3943 112 12 51 chr11 58182611 58182786 -90600686 - MER41B LTR ERV1 -454 181 1 11149 171 89 68 chr11 58182786 58184486 -90598986 - MER41B-int LTR ERV1 0 5946 4282 1495 155 98 32 chr11 58184486 58184763 -90598709 - AluSx SINE Alu -17 295 1 11149 171 89 68 chr11 58184763 58187622 -90595850 - MER41B-int LTR ERV1 -1664 4282 1222 3219 128 16 4 chr11 58187597 58188099 -90595373 - MER41B-int LTR ERV1 -5313 633 126 * 547 248 8 0 chr11 58188400 58188645 -90594827 + FLAM_A SINE Alu 5 250 0 229 49 0 49 chr11 58188663 58188734 -90594738 + (GAATG)n Simple_repeat Simple_repeat 1 106 0 229 49 0 49 chr11 58188734 58188775 -90594697 + (GAATG)n Simple_repeat Simple_repeat 5 43 0 269 76 8 92 chr11 58188789 58188908 -90594564 + (ATATG)n Simple_repeat Simple_repeat 2 110 0 195 184 0 0 chr11 58188949 58188987 -90594485 + GA-rich Low_complexity Low_complexity 4 41 0 851 101 5 48 chr11 58188987 58189175 -90594297 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 243 125 0 0 chr11 58189195 58189235 -90594237 + (GGGGA)n Simple_repeat Simple_repeat 4 43 0 189 302 83 65 chr11 58190250 58190419 -90593053 + MIR SINE MIR 85 256 -6 2072 114 3 14 chr11 58190665 58190962 -90592510 + AluSx SINE Alu 1 294 -18 610 258 55 0 chr11 58191013 58191195 -90592277 - MER58A DNA MER1_type -4 220 29 256 331 15 45 chr11 58191882 58192015 -90591457 + L2 LINE L2 2690 2818 -496 12537 181 23 42 chr11 58193982 58197057 -90586415 - L1 LINE L1 -908 5238 2221 23 33 0 0 chr11 58197587 58197617 -90585855 + AT_rich Low_complexity Low_complexity 1 30 0 216 86 0 0 chr11 58198201 58198236 -90585236 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 375 289 185 0 chr11 58200931 58201066 -90582406 + MIR SINE MIR 7 166 -96 517 329 25 11 chr11 58201328 58201602 -90581870 + L1ME LINE L1 5378 5655 -511 1544 189 60 18 chr11 58201722 58202119 -90581353 + Charlie1 DNA MER1_type 2144 2557 -204 24 32 0 0 chr11 58202120 58202151 -90581321 + AT_rich Low_complexity Low_complexity 1 31 0 663 43 108 0 chr11 58202151 58202244 -90581228 + MER85 DNA T2_type 1 103 -36 4745 65 12 0 chr11 58202244 58202846 -90580626 + L1PA6 LINE L1 5546 6154 0 234 0 71 24 chr11 58202874 58202916 -90580556 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 347 45 0 0 chr11 58202917 58202961 -90580511 + MER85 DNA T2_type 92 135 -4 455 263 268 0 chr11 58203104 58203309 -90580163 - MIR SINE MIR 0 262 3 25 0 0 0 chr11 58203418 58203443 -90580029 + AT_rich Low_complexity Low_complexity 1 25 0 21 71 0 0 chr11 58203565 58203607 -90579865 + AT_rich Low_complexity Low_complexity 1 42 0 352 284 90 8 chr11 58203745 58203879 -90579593 + MIR SINE MIR 63 207 -55 408 233 47 31 chr11 58204797 58204926 -90578546 + MER94 DNA DNA 1 131 -3 578 256 187 5 chr11 58204966 58205169 -90578303 + MIR SINE MIR 15 254 -8 35538 86 13 9 chr11 58205464 58211581 -90571891 - L1PA6 LINE L1 -2 6152 11 25 51 0 0 chr11 58211629 58211668 -90571804 + AT_rich Low_complexity Low_complexity 1 39 0 246 136 0 0 chr11 58211862 58211906 -90571566 + (TC)n Simple_repeat Simple_repeat 1 44 0 512 236 39 39 chr11 58211917 58212028 -90571444 - L1MC5 LINE L1 -518 7443 7330 1945 152 10 10 chr11 58212028 58212331 -90571141 - AluJb SINE Alu -9 303 1 512 236 39 39 chr11 58212331 58212401 -90571071 - L1MC5 LINE L1 -630 7331 7262 189 0 0 0 chr11 58212691 58212712 -90570760 + (TC)n Simple_repeat Simple_repeat 2 22 0 1683 128 12 8 chr11 58212727 58212970 -90570502 - AluSc SINE Alu -29 280 37 301 355 19 7 chr11 58213842 58213997 -90569475 - HERV16 LTR ERVL -787 4977 4821 328 271 155 13 chr11 58214216 58214371 -90569101 - HERV16 LTR ERVL -2070 3694 3518 266 365 66 13 chr11 58214382 58214683 -90568789 - HERV16 LTR ERVL -3622 1374 1058 2345 137 69 0 chr11 58214697 58215105 -90568367 - L1PA16 LINE L1 -2 6164 5729 342 318 57 32 chr11 58215475 58215755 -90567717 - HERV16 LTR ERVL -4348 648 362 2475 103 38 16 chr11 58215767 58216134 -90567338 - THE1C LTR MaLR 0 375 1 2193 112 0 10 chr11 58216812 58217108 -90566364 + AluY SINE Alu 1 293 -18 5228 156 56 5 chr11 58217164 58218682 -90564790 - L1MA7 LINE L1 -6 6285 4649 207 0 0 0 chr11 58218682 58218705 -90564767 + (TTG)n Simple_repeat Simple_repeat 2 24 0 5228 156 56 5 chr11 58218705 58218994 -90564478 - L1MA7 LINE L1 -1642 4649 4376 1783 123 0 8 chr11 58218994 58219268 -90564204 - AluSx SINE Alu 0 312 60 601 251 80 27 chr11 58219472 58219659 -90563813 - MLT1I LTR MaLR -15 394 198 1452 209 25 0 chr11 58219680 58220005 -90563467 - L1MA7 LINE L1 -1797 4349 4017 714 295 61 20 chr11 58220562 58220857 -90562615 - MLT1I LTR MaLR -15 394 88 198 275 0 0 chr11 58221640 58221731 -90561741 + (TCTCTG)n Simple_repeat Simple_repeat 4 94 0 394 241 195 46 chr11 58222356 58222597 -90560875 - MLT1I LTR MaLR -64 345 69 25 51 0 0 chr11 58224439 58224478 -90558994 + AT_rich Low_complexity Low_complexity 1 39 0 3701 157 7 2 chr11 58225214 58225831 -90557641 + L1M2 LINE L1 1 620 -6229 1832 149 155 13 chr11 58225831 58226206 -90557266 + MSTA LTR MaLR 1 428 0 269 338 0 0 chr11 58226264 58226338 -90557134 + LTR16A LTR ERVL 359 432 -18 392 273 72 76 chr11 58226450 58226665 -90556807 + L1ME3A LINE L1 5740 5954 -216 189 0 0 0 chr11 58226665 58226686 -90556786 + (CATA)n Simple_repeat Simple_repeat 2 22 0 392 273 72 76 chr11 58226686 58226902 -90556570 + L1ME3A LINE L1 5954 6169 -1 343 316 136 7 chr11 58227715 58227870 -90555602 + MIR SINE MIR 83 257 -5 2114 122 0 10 chr11 58228706 58229009 -90554463 + AluSc SINE Alu 1 300 -9 13055 194 31 5 chr11 58229025 58230952 -90552520 - L1P5 LINE L1 -499 6368 4299 2296 133 21 21 chr11 58230952 58231327 -90552145 - THE1C LTR MaLR 0 375 1 13055 194 31 5 chr11 58231327 58233003 -90550469 - L1P5 LINE L1 -2568 4299 2669 6737 69 0 0 chr11 58233024 58234163 -90549309 - L1PA5 LINE L1 0 6154 5010 40613 51 5 1 chr11 58234169 58240306 -90543166 - L1PA3 LINE L1 -3 6152 1 10261 214 30 1 chr11 58240304 58242328 -90541144 - L1P5 LINE L1 -4704 2148 66 * 5672 216 28 10 chr11 58242337 58243816 -90539656 - L1 LINE L1 -2388 4779 3274 5212 246 34 89 chr11 58243824 58246485 -90536987 - L1 LINE L1 -4642 2526 2 237 222 0 0 chr11 58246624 58246687 -90536785 + GA-rich Low_complexity Low_complexity 3 65 0 540 194 52 58 chr11 58247523 58247714 -90535758 + L1MA9 LINE L1 6085 6274 -38 21 0 0 0 chr11 58247714 58247735 -90535737 + AT_rich Low_complexity Low_complexity 1 21 0 720 270 33 28 chr11 58248113 58248328 -90535144 - MIR SINE MIR -32 230 15 229 355 13 0 chr11 58248370 58248446 -90535026 + MIR SINE MIR 111 187 -75 379 291 34 0 chr11 58248543 58248660 -90534812 + MIR3 SINE MIR 64 184 -24 2462 78 3 73 chr11 58250420 58250804 -90532668 - L1PA10 LINE L1 -4 6164 5808 478 251 106 23 chr11 58251259 58251283 -90532189 - MIR SINE MIR -8 254 233 2003 136 14 0 chr11 58251283 58251578 -90531894 - AluSx SINE Alu -13 299 1 478 251 106 23 chr11 58251578 58251770 -90531702 - MIR SINE MIR -29 233 15 206 239 22 0 chr11 58251770 58251816 -90531656 + CT-rich Low_complexity Low_complexity 1 47 0 318 26 0 0 chr11 58251969 58252008 -90531464 + (TG)n Simple_repeat Simple_repeat 1 39 0 314 299 117 34 chr11 58252394 58252658 -90530814 - L1M4 LINE L1 -1197 4949 4664 256 357 113 13 chr11 58253162 58253400 -90530072 - MIR SINE MIR 0 262 1 21 36 0 0 chr11 58253591 58253619 -90529853 + AT_rich Low_complexity Low_complexity 1 28 0 2064 147 0 0 chr11 58253760 58254059 -90529413 - AluSx SINE Alu -13 299 1 21 0 0 0 chr11 58254208 58254229 -90529243 + AT_rich Low_complexity Low_complexity 1 21 0 234 262 122 9 chr11 58256411 58256518 -90526954 + MLT1H LTR MaLR 431 549 0 22 0 0 0 chr11 58256522 58256544 -90526928 + AT_rich Low_complexity Low_complexity 1 22 0 727 254 41 10 chr11 58256552 58256749 -90526723 + MIR SINE MIR 39 241 -21 370 280 129 38 chr11 58256730 58256916 -90526556 - MIR SINE MIR -8 254 52 * 412 107 0 27 chr11 58257162 58257237 -90526235 + L1PA12 LINE L1 1 73 -7508 13213 173 14 10 chr11 58257240 58260419 -90523053 + L1PA12 LINE L1 270 3740 -3844 231 273 39 26 chr11 58260447 58260601 -90522871 + L1M4 LINE L1 4522 4677 -1469 331 336 37 15 chr11 58260642 58260776 -90522696 + L1M3c LINE L1 2 138 -6003 333 94 0 19 chr11 58260794 58260847 -90522625 - MLT2B3 LTR ERVL -1 553 502 20769 117 8 17 chr11 58262035 58265451 -90518021 + L1P4 LINE L1 11 3393 -2753 7663 25 1 0 chr11 58265451 58266846 -90516626 + L1PA3 LINE L1 4757 6152 -3 1310 137 13 13 chr11 58266846 58267079 -90516393 + L1P4 LINE L1 5474 5706 -460 534 249 97 2 chr11 58267597 58267777 -90515695 + MIR SINE MIR 16 219 -43 24 32 0 0 chr11 58269071 58269102 -90514370 + AT_rich Low_complexity Low_complexity 1 31 0 389 264 24 56 chr11 58269842 58269967 -90513505 - MIR3 SINE MIR -24 184 64 736 208 52 4 chr11 58269997 58270247 -90513225 - L1 LINE L1 -2812 4036 3775 * 3708 228 47 6 chr11 58270246 58271644 -90511828 - L1 LINE L1 -3697 3151 1695 40613 54 2 1 chr11 58271646 58277786 -90505686 - L1PA4 LINE L1 -7 6148 2 1946 321 80 79 chr11 58277817 58279489 -90503983 - L1 LINE L1 -5162 1687 15 5384 158 21 7 chr11 58279693 58280990 -90502482 + L1PA14 LINE L1 4848 6161 0 1415 173 0 8 chr11 58282624 58282884 -90500588 + Tigger2 DNA MER2_type 1 258 -2460 1195 207 123 4 chr11 58282894 58283155 -90500317 - MSTD LTR MaLR -49 347 56 * 14410 143 20 20 chr11 58283147 58285525 -90497947 + Tigger2 DNA MER2_type 242 2619 -99 1103 314 105 38 chr11 58286414 58287427 -90496045 - L1MEd LINE L1 -4980 1139 59 643 282 62 24 chr11 58287615 58287824 -90495648 - MIR SINE MIR -15 247 31 1307 109 91 0 chr11 58290215 58290425 -90493047 + MER30 DNA MER1_type 1 229 -1 2203 164 42 0 chr11 58290499 58290876 -90492596 + MER57A LTR ERV1 1 393 -10 2185 165 61 3 chr11 58290885 58291248 -90492224 + MER57A-int LTR ERV1 1 384 -7153 1621 147 0 21 chr11 58291292 58291571 -90491901 + MER57A-int LTR ERV1 361 633 -5313 * 12303 151 48 20 chr11 58291567 58295247 -90488225 + MER57A-int LTR ERV1 1083 5687 -2129 13171 99 20 9 chr11 58295248 58295546 -90487926 + MER57A-int LTR ERV1 5256 5549 -1988 14007 37 1 0 chr11 58295546 58298037 -90485435 + L1PA3 LINE L1 3672 6154 -1 13171 99 20 9 chr11 58298037 58299609 -90483863 + MER57A-int LTR ERV1 5549 7146 -391 834 69 23 31 chr11 58299609 58299739 -90483733 + LTR54B LTR ERV1 3 131 -367 1268 134 147 0 chr11 58299741 58299965 -90483507 + MER57A-int LTR ERV1 7281 7537 0 2223 177 10 0 chr11 58299965 58300361 -90483111 + MER57A LTR ERV1 1 400 -3 236 263 0 0 chr11 58301614 58301671 -90481801 + MLT1F LTR MaLR 484 540 -2 279 0 0 0 chr11 58301975 58302006 -90481466 + (TTA)n Simple_repeat Simple_repeat 3 33 0 4104 35 0 0 chr11 58302006 58302486 -90480986 - L1PA3 LINE L1 -18 6137 5658 180 0 0 0 chr11 58302885 58302905 -90480567 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 1111 289 87 81 chr11 58303031 58304049 -90479423 - HAL1 LINE L1 -1475 1032 8 24 0 0 0 chr11 58304161 58304185 -90479287 + AT_rich Low_complexity Low_complexity 1 24 0 364 205 13 26 chr11 58304907 58304985 -90478487 - L2 LINE L2 0 3313 3237 1900 155 42 33 chr11 58305111 58305472 -90478000 + THE1B LTR MaLR 1 364 0 573 118 101 0 chr11 58305600 58305719 -90477753 + L1MA7 LINE L1 6155 6285 -6 2416 90 58 0 chr11 58305785 58306131 -90477341 + L1PA11 LINE L1 5807 6172 -2 488 288 122 44 chr11 58309317 58309422 -90474050 - MIR SINE MIR 0 262 167 5768 66 15 1 chr11 58309422 58310178 -90473294 - MER4E LTR ERV1 0 766 1 488 288 122 44 chr11 58310178 58310301 -90473171 - MIR SINE MIR -95 167 16 627 274 22 6 chr11 58310436 58310615 -90472857 - MIR SINE MIR 0 262 81 2254 120 63 80 chr11 58310994 58311420 -90472052 - MSTA LTR MaLR -9 419 1 467 250 56 14 chr11 58313198 58313342 -90470130 + MIR3 SINE MIR 28 177 -31 256 233 9 35 chr11 58313583 58313699 -90469773 + (TATATG)n Simple_repeat Simple_repeat 4 116 0 1799 139 32 7 chr11 58314125 58314406 -90469066 + AluSx SINE Alu 1 288 -24 1150 127 0 39 chr11 58314422 58314603 -90468869 + AluJb SINE Alu 124 297 -15 205 283 0 33 chr11 58314748 58314808 -90468664 - L3 LINE CR1 -830 747 690 183 264 38 0 chr11 58314889 58314942 -90468530 - L3 LINE CR1 -1187 390 336 428 221 21 79 chr11 58314943 58315016 -90468456 + L2 LINE L2 3182 3245 -68 3335 149 20 74 chr11 58315016 58315746 -90467726 - LTR8 LTR ERV1 0 691 1 428 221 21 79 chr11 58315746 58315812 -90467660 + L2 LINE L2 3245 3313 0 420 308 8 8 chr11 58315957 58316087 -90467385 - MIR SINE MIR -4 258 129 625 271 62 46 chr11 58316719 58316959 -90466513 + MIR SINE MIR 8 251 -11 273 252 197 8 chr11 58317142 58317269 -90466203 + MIR3 SINE MIR 50 200 -8 2548 54 0 25 chr11 58317741 58318058 -90465414 + AluY SINE Alu 1 309 -2 2125 120 12 6 chr11 58318164 58318488 -90464984 + L1PB2 LINE L1 5826 6151 0 266 232 29 0 chr11 58318710 58318779 -90464693 + L1MB2 LINE L1 6060 6130 -41 2532 204 36 28 chr11 58318780 58319310 -90464162 + MLT2B3 LTR ERVL 1 534 -20 290 189 0 0 chr11 58319325 58319378 -90464094 + Ricksha DNA DNA 850 902 -2344 248 156 0 0 chr11 58319378 58319423 -90464049 + L1MB2 LINE L1 6125 6169 -2 277 313 97 49 chr11 58319861 58320005 -90463467 + MIR3 SINE MIR 19 169 -39 216 97 0 0 chr11 58322126 58322157 -90461315 + (CA)n Simple_repeat Simple_repeat 2 32 0 3691 226 44 87 chr11 58322455 58322877 -90460595 + L1ME LINE L1 3796 4234 -1932 1980 138 43 27 chr11 58322877 58323246 -90460226 - THE1C LTR MaLR 0 375 1 3691 226 44 87 chr11 58323246 58324587 -90458885 + L1ME LINE L1 4234 5477 -689 3886 158 24 7 chr11 58324610 58325333 -90458139 + L1MA7 LINE L1 5556 6290 -1 455 305 183 0 chr11 58325935 58326099 -90457373 + MIR SINE MIR 50 243 -19 2981 147 24 4 chr11 58327011 58327522 -90455950 - L1MC1 LINE L1 -5 6328 5808 2124 151 85 15 chr11 58327837 58328235 -90455237 + MSTB LTR MaLR 1 426 0 187 292 0 0 chr11 58329226 58329274 -90454198 - L2 LINE L2 -18 3254 3207 609 298 50 41 chr11 58329969 58330059 -90453413 - MIR SINE MIR -14 248 160 1639 191 3 29 chr11 58330059 58330368 -90453104 - AluJb SINE Alu -11 301 1 609 298 50 41 chr11 58330368 58330495 -90452977 - MIR SINE MIR -102 160 29 621 238 139 14 chr11 58331806 58331884 -90451588 - MIR SINE MIR 0 262 195 672 57 40 16 chr11 58331884 58332008 -90451464 + (TAGA)n Simple_repeat Simple_repeat 3 129 0 621 238 139 14 chr11 58332008 58332152 -90451320 - MIR SINE MIR -67 195 12 2224 102 16 0 chr11 58332161 58332466 -90451006 + AluSp SINE Alu 1 310 -3 200 256 0 0 chr11 58332750 58332789 -90450683 - L2 LINE L2 -12 3260 3222 * 354 327 132 6 chr11 58332787 58332946 -90450526 - MIR SINE MIR -81 181 3 219 146 0 0 chr11 58332986 58333027 -90450445 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 186 43 0 0 chr11 58334316 58334339 -90449133 + (A)n Simple_repeat Simple_repeat 1 23 0 457 283 114 14 chr11 58334371 58334590 -90448882 - MIR SINE MIR -1 261 21 6852 82 38 0 chr11 58335004 58336471 -90447001 - L1PA10 LINE L1 -4 6164 4664 244 333 0 0 chr11 58337035 58337104 -90446368 - MIR SINE MIR -13 249 181 1465 99 85 0 chr11 58337954 58338166 -90445306 + MER30 DNA MER1_type 1 230 0 350 299 199 25 chr11 58338576 58338777 -90444695 + L2 LINE L2 3020 3255 -17 426 192 168 16 chr11 58339838 58339963 -90443509 - L2 LINE L2 -1 3312 3169 243 306 176 0 chr11 58340039 58340147 -90443325 - MIR SINE MIR -116 146 20 668 266 90 40 chr11 58340846 58341222 -90442250 - L1MC/D LINE L1 -2001 5807 5413 635 128 0 46 chr11 58341223 58341332 -90442140 - FLAM_C SINE Alu -1 142 39 330 315 150 11 chr11 58341436 58341696 -90441776 - L1MC/D LINE L1 -842 5304 5009 1383 189 68 18 chr11 58341833 58342114 -90441358 - AluJb SINE Alu -17 295 1 6666 90 12 4 chr11 58342126 58343115 -90440357 - L1PA13 LINE L1 0 6163 5156 230 264 57 38 chr11 58343153 58343259 -90440213 + L1M4 LINE L1 5612 5719 -459 2159 106 3 0 chr11 58343716 58343999 -90439473 + AluSx SINE Alu 1 284 -28 261 0 0 0 chr11 58343999 58344028 -90439444 + (CA)n Simple_repeat Simple_repeat 2 30 0 34 0 0 0 chr11 58344345 58344379 -90439093 + AT_rich Low_complexity Low_complexity 1 34 0 2407 84 0 0 chr11 58344731 58345028 -90438444 - AluY SINE Alu -14 297 1 1802 146 7 31 chr11 58345133 58345427 -90438045 - AluJo SINE Alu -23 289 3 1928 193 48 79 chr11 58345983 58346464 -90437008 - MER31B LTR ERV1 0 466 1 319 321 5 75 chr11 58346471 58346658 -90436814 + MIR SINE MIR 41 214 -48 2387 67 0 0 chr11 58348433 58348757 -90434715 - AluY SINE Alu 0 324 1 461 248 76 0 chr11 58349547 58349652 -90433820 + FLAM_A SINE Alu 20 132 -10 547 233 140 21 chr11 58349652 58349845 -90433627 - MER106A DNA MER1_type -20 216 1 273 146 0 0 chr11 58349974 58350022 -90433450 + (TG)n Simple_repeat Simple_repeat 1 48 0 1682 149 21 28 chr11 58350647 58350966 -90432506 + AluSx SINE Alu 9 312 0 347 249 207 32 chr11 58351365 58351582 -90431890 - MIR SINE MIR -6 256 2 246 258 16 0 chr11 58351603 58351665 -90431807 - MIR SINE MIR -65 143 81 1852 158 3 10 chr11 58351924 58352216 -90431256 + AluSx SINE Alu 5 294 -18 2081 141 3 0 chr11 58352257 58352569 -90430903 + AluSq SINE Alu 1 313 0 269 242 0 15 chr11 58352842 58352908 -90430564 + GA-rich Low_complexity Low_complexity 1 65 0 1814 228 75 27 chr11 58353676 58353740 -90429732 - L1ME1 LINE L1 -3 6163 6104 2323 98 0 0 chr11 58353740 58354035 -90429437 - AluSg SINE Alu -15 295 1 1814 228 75 27 chr11 58354035 58354488 -90428984 - L1ME1 LINE L1 -62 6104 5621 1002 220 68 43 chr11 58354553 58354847 -90428625 + L1ME LINE L1 5268 5578 -588 2320 102 0 0 chr11 58354847 58355142 -90428330 - AluSx SINE Alu -17 295 1 1002 220 68 43 chr11 58355142 58355186 -90428286 + L1ME LINE L1 5578 5619 -547 216 97 0 0 chr11 58355201 58355232 -90428240 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 296 266 53 0 chr11 58355503 58355597 -90427875 + MIR SINE MIR 29 127 -135 420 111 0 62 chr11 58355719 58355800 -90427672 + L1MA9 LINE L1 6213 6288 -24 1053 99 0 0 chr11 58355802 58355944 -90427528 + AluSg/x SINE Alu 167 308 -4 2180 133 3 0 chr11 58355947 58356255 -90427217 + AluSx SINE Alu 1 309 -3 2182 110 0 19 chr11 58357075 58357383 -90426089 - AluSx SINE Alu -10 302 1 4756 21 0 0 chr11 58357442 58358353 -90425119 + L1P1 LINE L1 4889 5799 -356 998 176 6 6 chr11 58358962 58360590 -90422882 - ALR/Alpha Satellite centromeric 0 1628 1 666 297 35 59 chr11 58361074 58361330 -90422142 - MIR SINE MIR -11 251 2 331 286 0 79 chr11 58361928 58362054 -90421418 + MIR3 SINE MIR 65 165 -43 2347 89 20 0 chr11 58362282 58362586 -90420886 - AluY SINE Alu -1 310 1 2373 88 3 0 chr11 58362588 58362883 -90420589 - AluSc SINE Alu -13 296 1 25 51 0 0 chr11 58364007 58364046 -90419426 + AT_rich Low_complexity Low_complexity 1 39 0 2311 100 0 0 chr11 58364812 58365112 -90418360 + AluSq SINE Alu 1 300 -13 245 222 40 32 chr11 58365205 58365331 -90418141 + (TA)n Simple_repeat Simple_repeat 2 128 0 2068 113 3 0 chr11 58365425 58365717 -90417755 - AluY SINE Alu -18 293 1 760 154 51 0 chr11 58365748 58365865 -90417607 - FLAM_C SINE Alu -10 123 1 1975 149 13 0 chr11 58366189 58366497 -90416975 - AluSx SINE Alu 0 312 1 1468 147 112 8 chr11 58366530 58366788 -90416684 + AluJb SINE Alu 1 285 -27 37 0 0 0 chr11 58366788 58366825 -90416647 + AT_rich Low_complexity Low_complexity 1 37 0 2336 89 3 0 chr11 58367744 58368037 -90415435 - AluSx SINE Alu -18 294 1 1893 147 3 32 chr11 58368354 58368667 -90414805 - AluJb SINE Alu -7 305 2 312 274 24 0 chr11 58368897 58368981 -90414491 + MIR3 SINE MIR 109 194 -14 2475 61 0 0 chr11 58370248 58370543 -90412929 - AluY SINE Alu -16 295 1 1488 154 77 4 chr11 58370785 58371073 -90412399 + AluJb SINE Alu 6 312 0 2445 68 0 37 chr11 58371083 58371405 -90412067 + AluY SINE Alu 2 311 0 552 164 33 80 chr11 58371406 58371539 -90411933 + L1MC2 LINE L1 6216 6354 -1416 2605 51 0 10 chr11 58371539 58371851 -90411621 + AluY SINE Alu 1 309 -2 1893 149 3 7 chr11 58371855 58372157 -90411315 + AluSx SINE Alu 1 301 -11 552 164 33 80 chr11 58372157 58372175 -90411297 + L1MC2 LINE L1 6357 7769 -1 482 233 33 0 chr11 58372519 58372639 -90410833 + MIR SINE MIR 81 204 -58 2291 129 6 131 chr11 58373411 58373901 -90409571 + MER39B LTR ERV1 6 434 -219 22 0 0 0 chr11 58373901 58373923 -90409549 + AT_rich Low_complexity Low_complexity 1 22 0 552 132 19 75 chr11 58373923 58374029 -90409443 - U6 snRNA snRNA -5 102 3 1453 114 13 25 chr11 58374030 58374266 -90409206 + MER39B LTR ERV1 421 653 0 3430 167 59 40 chr11 58375700 58375759 -90407713 - L1MC3 LINE L1 -314 7471 7415 3391 162 13 9 chr11 58375759 58376284 -90407188 + MER1A DNA MER1_type 1 527 0 3430 167 59 40 chr11 58376284 58376409 -90407063 - L1MC3 LINE L1 -370 7415 7294 2472 111 22 33 chr11 58376409 58376777 -90406695 - THE1B LTR MaLR 0 364 1 3430 167 59 40 chr11 58376777 58376928 -90406544 - L1MC3 LINE L1 -491 7294 7147 1834 166 3 7 chr11 58376928 58377223 -90406249 + AluJb SINE Alu 1 294 -18 3430 167 59 40 chr11 58377223 58377592 -90405880 - L1MC3 LINE L1 -638 7147 6751 31 26 0 0 chr11 58377722 58377760 -90405712 + AT_rich Low_complexity Low_complexity 1 38 0 565 318 37 49 chr11 58378066 58378448 -90405024 + L2 LINE L2 2499 2942 -372 6694 30 3 0 chr11 58378759 58379526 -90403946 - L1PA3 LINE L1 0 6155 5387 194 325 65 0 chr11 58379604 58379681 -90403791 - L2 LINE L2 -5 3308 3227 195 310 26 62 chr11 58379800 58379913 -90403559 - MIR SINE MIR -139 123 15 49 18 0 0 chr11 58381603 58381659 -90401813 + AT_rich Low_complexity Low_complexity 1 56 0 195 311 108 0 chr11 58381677 58381751 -90401721 - L2 LINE L2 -40 3232 3151 1488 155 40 25 chr11 58382049 58382327 -90401145 - L1MB1 LINE L1 0 6168 5887 227 252 37 65 chr11 58382653 58382760 -90400712 + MIR SINE MIR 16 119 -89 282 324 48 15 chr11 58383087 58383239 -90400233 - MIR SINE MIR -70 138 16 25 0 0 0 chr11 58383329 58383354 -90400118 + AT_rich Low_complexity Low_complexity 1 25 0 1313 80 10 40 chr11 58383810 58384010 -90399462 + AluSg/x SINE Alu 101 294 -18 226 286 30 125 chr11 58384261 58384429 -90399043 - MER5A DNA MER1_type -31 158 7 250 246 26 53 chr11 58384441 58384555 -90398917 - MER112 DNA MER1_type -5 255 145 2192 104 3 3 chr11 58384565 58384863 -90398609 + AluSx SINE Alu 2 299 -13 2342 151 27 58 chr11 58384897 58385908 -90397564 + L1MA8 LINE L1 5197 6238 -53 2324 103 0 0 chr11 58385908 58386199 -90397273 + AluSx SINE Alu 1 291 -21 333 93 0 0 chr11 58386199 58386253 -90397219 + (TA)n Simple_repeat Simple_repeat 2 55 0 2342 151 27 58 chr11 58386253 58386369 -90397103 + L1MA8 LINE L1 6236 6262 -29 2110 106 191 6 chr11 58386369 58386726 -90396746 - MSTA LTR MaLR 0 428 6 1880 143 4 4 chr11 58386842 58387114 -90396358 - AluSq SINE Alu -39 274 3 1093 105 116 11 chr11 58387141 58387322 -90396150 + MSTA LTR MaLR 1 200 -228 449 130 0 0 chr11 58387534 58387603 -90395869 + AluSq SINE Alu 148 216 -97 914 230 52 32 chr11 58387612 58388099 -90395373 - L1ME LINE L1 -683 5483 4999 2364 67 10 10 chr11 58388243 58388542 -90394930 + AluSx SINE Alu 1 299 -13 1452 197 79 47 chr11 58388686 58389067 -90394405 + MER31B LTR ERV1 1 393 -73 22 25 0 25 chr11 58389098 58389122 -90394350 + AT_rich Low_complexity Low_complexity 1 25 -14 1616 165 3 44 chr11 58389122 58389266 -90394206 + AluJo SINE Alu 3 130 -182 2298 103 0 3 chr11 58389266 58389568 -90393904 + AluSg SINE Alu 1 301 -9 1616 165 3 44 chr11 58389568 58389720 -90393752 + AluJo SINE Alu 130 287 -25 22 25 0 25 chr11 58389720 58389735 -90393737 + AT_rich Low_complexity Low_complexity 25 39 0 315 49 0 0 chr11 58389886 58389927 -90393545 + (TTTTA)n Simple_repeat Simple_repeat 5 45 0 7339 54 2 1 chr11 58389927 58391305 -90392167 - L1PA5 LINE L1 -25 6129 4749 296 312 157 27 chr11 58391411 58391607 -90391865 - L2 LINE L2 -549 2765 2596 4275 139 31 9 chr11 58391607 58392283 -90391189 - LTR8 LTR ERV1 0 691 1 296 312 157 27 chr11 58392283 58392455 -90391017 - L2 LINE L2 -718 2596 2349 1178 169 0 108 chr11 58392465 58392744 -90390728 + MLT1B LTR MaLR 2 250 -140 1902 109 8 19 chr11 58392894 58393160 -90390312 + AluSx SINE Alu 26 288 -24 36 0 0 0 chr11 58393160 58393196 -90390276 + AT_rich Low_complexity Low_complexity 1 36 0 324 162 54 14 chr11 58393217 58393291 -90390181 - MIR SINE MIR -111 151 75 4663 89 3 26 chr11 58393708 58393832 -90389640 - MER41B LTR ERV1 0 635 510 2300 112 0 6 chr11 58393832 58394146 -90389326 + AluSx SINE Alu 1 312 0 4663 89 3 26 chr11 58394146 58394671 -90388801 - MER41B LTR ERV1 -125 510 1 2376 72 0 0 chr11 58394956 58395257 -90388215 - AluSc SINE Alu 0 301 1 268 223 97 0 chr11 58395298 58395401 -90388071 + L1MC4a LINE L1 5315 5427 -2381 746 143 17 0 chr11 58395557 58395676 -90387796 - FLAM_C SINE Alu -21 122 2 384 259 102 7 chr11 58395719 58395866 -90387606 + MIR SINE MIR 45 205 -57 250 255 208 26 chr11 58395925 58396156 -90387316 + L1MC4a LINE L1 5687 5959 -1849 356 167 0 0 chr11 58396672 58396726 -90386746 - AluJ/FLAM SINE Alu -244 58 5 1537 218 48 0 chr11 58397248 58397564 -90385908 + MER69 DNA AcHobo 9 339 -2187 2026 116 3 27 chr11 58397943 58398235 -90385237 + AluSx SINE Alu 1 285 -27 2024 111 40 3 chr11 58398244 58398541 -90384931 + AluSg SINE Alu 1 308 -2 380 239 92 0 chr11 58398544 58398653 -90384819 + MER69 DNA AcHobo 1868 1986 -540 1954 134 14 7 chr11 58398656 58398947 -90384525 + AluSx SINE Alu 1 293 -19 474 274 65 20 chr11 58399533 58399686 -90383786 - MIR SINE MIR -46 216 57 1888 155 0 0 chr11 58399908 58400235 -90383237 + AluSx SINE Alu 1 327 0 2314 101 7 7 chr11 58401592 58401900 -90381572 - AluSx SINE Alu -4 308 1 1249 226 31 56 chr11 58402186 58402509 -90380963 + MLT1E LTR MaLR 279 593 0 367 88 44 15 chr11 58403138 58403206 -90380266 + CT-rich Low_complexity Low_complexity 1 70 0 2059 125 30 0 chr11 58403207 58403503 -90379969 - AluSx SINE Alu -7 305 1 2063 45 0 0 chr11 58404273 58404515 -90378957 - L1PA3 LINE L1 0 6155 5914 649 149 0 9 chr11 58404589 58404703 -90378769 - L1PA15 LINE L1 -4 6161 6049 2773 132 41 10 chr11 58404773 58405266 -90378206 - L1PA16 LINE L1 -107 6061 5548 1929 162 0 3 chr11 58405524 58405826 -90377646 - AluJb SINE Alu -11 301 1 790 271 78 35 chr11 58405927 58406211 -90377261 + MLT1J2 LTR MaLR 1 296 -154 1109 197 5 30 chr11 58406213 58406416 -90377056 + AluJo SINE Alu 4 201 -111 653 280 96 4 chr11 58406416 58406655 -90376817 + MLT1J2 LTR MaLR 188 448 -2 2384 79 0 3 chr11 58407055 58407346 -90376126 - AluSg SINE Alu -19 291 2 1552 138 57 107 chr11 58407633 58407824 -90375648 - AluJb SINE Alu 0 312 142 2255 83 3 14 chr11 58407824 58408113 -90375359 - AluY SINE Alu -25 286 1 1552 138 57 107 chr11 58408113 58408239 -90375233 - AluJb SINE Alu -170 142 11 2366 96 0 13 chr11 58408383 58408697 -90374775 - AluSp SINE Alu -3 310 1 1028 227 10 52 chr11 58410451 58410622 -90372850 - AluSx SINE Alu -7 295 141 2769 25 0 3 chr11 58410622 58410936 -90372536 - AluYb8 SINE Alu -5 313 1 1028 227 10 52 chr11 58410936 58411072 -90372400 - AluSx SINE Alu -161 141 1 294 262 219 65 chr11 58411654 58411805 -90371667 - L1MC4a LINE L1 -104 6017 5891 1408 197 77 0 chr11 58411805 58412079 -90371393 - AluJo SINE Alu -17 295 1 294 262 219 65 chr11 58412079 58412160 -90371312 - L1MC4a LINE L1 -230 5891 5747 310 315 31 15 chr11 58412788 58412918 -90370554 + L2 LINE L2 3168 3299 -14 244 154 0 0 chr11 58412953 58412992 -90370480 + Alu SINE Alu 1 39 -94 2145 132 3 3 chr11 58413014 58413324 -90370148 + AluSx SINE Alu 1 310 -2 1564 171 6 52 chr11 58413337 58413664 -90369808 + AluJb SINE Alu 1 312 0 700 159 0 9 chr11 58413695 58413802 -90369670 - FLAM_C SINE Alu -26 117 12 24 0 0 0 chr11 58414205 58414229 -90369243 + AT_rich Low_complexity Low_complexity 1 24 0 2039 98 58 0 chr11 58414525 58414802 -90368670 - AluSq SINE Alu -20 293 1 838 135 8 8 chr11 58415132 58415265 -90368207 + FLAM_C SINE Alu 1 133 0 2420 82 3 3 chr11 58415639 58415944 -90367528 + AluSg SINE Alu 2 306 -4 210 234 81 97 chr11 58416058 58416182 -90367290 + MIR SINE MIR 21 142 -120 1775 160 10 17 chr11 58416488 58416782 -90366690 + AluJb SINE Alu 1 292 -20 24 53 0 0 chr11 58417152 58417190 -90366282 + AT_rich Low_complexity Low_complexity 1 38 0 1990 153 13 0 chr11 58420233 58420541 -90362931 - AluSx SINE Alu 0 312 1 1620 194 7 11 chr11 58421219 58421502 -90361970 - AluJo SINE Alu -30 282 1 876 123 141 6 chr11 58421653 58421823 -90361649 - L1MA3 LINE L1 -120 6185 5993 2021 81 4 0 chr11 58422074 58422335 -90361137 - AluSp SINE Alu -3 310 49 2280 80 28 0 chr11 58422476 58422762 -90360710 - AluSx SINE Alu -18 294 1 966 143 0 0 chr11 58423436 58423569 -90359903 - FLAM_C SINE Alu -10 133 1 185 372 39 0 chr11 58423610 58423688 -90359784 + L2 LINE L2 3008 3088 -225 237 109 291 0 chr11 58423851 58423906 -90359566 + L2 LINE L2 3242 3312 -1 205 281 110 49 chr11 58424648 58424730 -90358742 + MIR SINE MIR 20 106 -102 243 291 23 12 chr11 58424753 58424839 -90358633 + MIR SINE MIR 6 92 -170 1224 253 76 101 chr11 58424857 58425530 -90357942 + MER21B LTR ERV1 58 713 -150 2271 119 0 3 chr11 58425779 58426090 -90357382 + AluSx SINE Alu 1 310 -2 254 289 0 31 chr11 58426249 58426346 -90357126 - MIR SINE MIR -1 261 168 331 333 31 7 chr11 58426391 58426685 -90356787 - AluSq SINE Alu 0 303 3 2066 157 0 3 chr11 58426691 58426996 -90356476 - AluJo SINE Alu -8 304 1 7573 174 41 63 chr11 58427030 58427686 -90355786 + L1MB2 LINE L1 3630 4299 -1872 7397 53 6 37 chr11 58427686 58428939 -90354533 + SVA Other Other 330 1386 0 7573 174 41 63 chr11 58428939 58429968 -90353504 + L1MB2 LINE L1 4299 5349 -822 2131 126 0 3 chr11 58429968 58430270 -90353202 + AluSx SINE Alu 1 301 -11 7573 174 41 63 chr11 58430270 58431001 -90352471 + L1MB2 LINE L1 5349 6003 -168 2859 155 29 27 chr11 58430650 58431001 -90352471 + L1MB3 LINE L1 5665 6019 -164 2254 110 0 3 chr11 58431001 58431302 -90352170 + AluSx SINE Alu 1 300 -12 7573 174 41 63 chr11 58431302 58431467 -90352005 + L1MB2 LINE L1 6003 6170 -1 2859 155 29 27 chr11 58431302 58431467 -90352005 + L1MB3 LINE L1 6019 6182 -1 2185 119 3 0 chr11 58431472 58431766 -90351706 + AluSp SINE Alu 1 295 -18 209 32 0 32 chr11 58431766 58431797 -90351675 + (TA)n Simple_repeat Simple_repeat 2 31 0 2029 90 0 0 chr11 58432403 58432658 -90350814 - AluSx SINE Alu -13 299 45 207 392 38 13 chr11 58432727 58432885 -90350587 - L2 LINE L2 -578 2736 2575 196 310 177 18 chr11 58433377 58433490 -90349982 + MIR3 SINE MIR 14 144 -64 10652 176 5 5 chr11 58433512 58436103 -90347369 + L1PB1 LINE L1 3201 5791 -360 559 54 77 19 chr11 58436103 58436364 -90347108 + (TA)n Simple_repeat Simple_repeat 1 276 0 2528 122 6 6 chr11 58436394 58436756 -90346716 + L1PB1 LINE L1 5787 6148 -3 5238 177 34 1 chr11 58436879 58437925 -90345547 - L1MA4 LINE L1 -5 6295 5215 2396 50 3 3 chr11 58437938 58438237 -90345235 - AluY SINE Alu -12 299 1 1332 213 42 25 chr11 58438237 58438398 -90345074 - AluJb SINE Alu -11 291 121 510 17 0 0 chr11 58438398 58438457 -90345015 + (TAGA)n Simple_repeat Simple_repeat 3 61 0 1332 213 42 25 chr11 58438457 58438581 -90344891 - AluJb SINE Alu -181 121 1 958 193 33 25 chr11 58438585 58438829 -90344643 + L1ME1 LINE L1 3480 3725 -2421 1679 231 80 49 chr11 58438830 58439530 -90343942 + L1ME2 LINE L1 4449 5170 -976 2143 112 3 34 chr11 58439596 58439919 -90343553 + AluSq SINE Alu 1 313 0 2101 211 99 14 chr11 58439951 58440192 -90343280 + L1ME2 LINE L1 5159 5378 -786 1860 163 3 0 chr11 58440192 58440486 -90342986 + AluJb SINE Alu 1 295 -17 2101 211 99 14 chr11 58440486 58440969 -90342503 + L1ME2 LINE L1 5378 5941 -223 314 200 0 0 chr11 58441077 58441137 -90342335 - L1MC4 LINE L1 -1339 6703 6644 349 240 225 8 chr11 58441153 58441177 -90342295 + L2 LINE L2 2642 2660 -654 1749 120 9 0 chr11 58441177 58441410 -90342062 - AluSp SINE Alu -14 299 65 349 240 225 8 chr11 58441410 58441514 -90341958 + L2 LINE L2 2660 2798 -516 432 280 100 46 chr11 58441587 58441826 -90341646 + L2 LINE L2 3049 3300 -13 216 0 0 0 chr11 58442685 58442709 -90340763 + (TG)n Simple_repeat Simple_repeat 2 25 0 22 0 0 0 chr11 58444192 58444214 -90339258 + AT_rich Low_complexity Low_complexity 1 22 0 2418 67 3 16 chr11 58444501 58444816 -90338656 + AluY SINE Alu 1 311 0 352 366 87 41 chr11 58444994 58445407 -90338065 + L2 LINE L2 2840 3271 -1 21 0 0 0 chr11 58445594 58445615 -90337857 + AT_rich Low_complexity Low_complexity 1 21 0 223 268 110 12 chr11 58445756 58445838 -90337634 + MIR SINE MIR 48 137 -71 1215 163 5 5 chr11 58446112 58446315 -90337157 - AluJo SINE Alu -17 295 93 257 226 52 61 chr11 58446424 58446539 -90336933 - MIR3 SINE MIR -92 116 3 251 345 166 7 chr11 58448852 58448991 -90334481 + L2 LINE L2 3108 3268 -4 325 293 63 5 chr11 58449531 58449722 -90333750 + L1ME1 LINE L1 3869 4070 -2076 2023 144 13 3 chr11 58449911 58450209 -90333263 + AluSx SINE Alu 1 301 -11 273 149 43 0 chr11 58450575 58450622 -90332850 - LTR50 LTR ERVL -2 793 745 794 220 76 35 chr11 58450656 58450947 -90332525 + L1MEc LINE L1 1908 2216 -4180 2032 154 0 3 chr11 58450947 58451258 -90332214 + AluSx SINE Alu 1 310 -2 794 220 76 35 chr11 58451258 58451307 -90332165 + L1MEc LINE L1 2216 2262 -4134 528 225 0 0 chr11 58451303 58451414 -90332058 + L1MC3 LINE L1 6456 6566 -1219 * 725 162 0 0 chr11 58451416 58451515 -90331957 + AluJ/FLAM SINE Alu 2 100 -212 854 142 88 7 chr11 58451521 58451614 -90331858 + L1PB1 LINE L1 5989 6100 -51 2021 130 3 7 chr11 58451614 58451915 -90331557 + AluSx SINE Alu 3 302 -10 854 142 88 7 chr11 58451915 58451969 -90331503 + L1PB1 LINE L1 6100 6148 -3 1806 167 17 33 chr11 58451996 58452355 -90331117 + L1MA4 LINE L1 5939 6291 -9 1435 210 63 3 chr11 58452389 58452756 -90330716 - L1 LINE L1 -2585 3561 3173 1814 118 40 56 chr11 58452771 58453075 -90330397 + AluSx SINE Alu 1 299 -13 217 182 13 78 chr11 58453106 58453183 -90330289 + A-rich Low_complexity Low_complexity 5 76 0 1980 264 58 27 chr11 58453187 58453333 -90330139 + L1ME1 LINE L1 4499 4639 -1525 1593 140 17 55 chr11 58453333 58453625 -90329847 - AluJb SINE Alu -19 293 13 1980 264 58 27 chr11 58453625 58454562 -90328910 + L1ME1 LINE L1 4639 5607 -557 304 117 106 64 chr11 58454559 58454653 -90328819 + L1ME1 LINE L1 5819 5916 -250 * 1878 174 3 0 chr11 58454733 58455038 -90328434 - AluJb SINE Alu -6 306 1 220 302 31 10 chr11 58455094 58455190 -90328282 + L2 LINE L2 2751 2848 -466 355 255 103 59 chr11 58455226 58455430 -90328042 + L2 LINE L2 3045 3257 -56 1772 165 31 0 chr11 58455707 58455998 -90327474 - AluSx SINE Alu -12 300 1 2077 115 14 0 chr11 58457171 58457457 -90326015 + AluSx SINE Alu 1 290 -22 2002 112 14 0 chr11 58458413 58458710 -90324762 + AluSg SINE Alu 1 301 0 263 333 128 44 chr11 58458752 58459001 -90324471 + L2 LINE L2 2840 3109 -163 2375 43 30 23 chr11 58459261 58459563 -90323909 - AluY SINE Alu -7 304 1 22 0 0 0 chr11 58459572 58459594 -90323878 + AT_rich Low_complexity Low_complexity 1 22 0 418 211 0 0 chr11 58459962 58460033 -90323439 - tRNA-Val-GTG tRNA tRNA -3 73 3 406 222 0 0 chr11 58460319 58460391 -90323081 - tRNA-Val-GTG tRNA tRNA -2 74 3 583 23 0 149 chr11 58460627 58460714 -90322758 + tRNA-Arg-AGA tRNA tRNA 1 74 -2 342 154 64 64 chr11 58461090 58461168 -90322304 + tRNA-Leu-TTG tRNA tRNA 3 80 -6 302 235 0 29 chr11 58461425 58461493 -90321979 - L2 LINE L2 -1 3312 3247 2396 81 0 7 chr11 58461633 58461943 -90321529 + AluSx SINE Alu 1 308 -4 712 151 0 48 chr11 58461955 58462081 -90321391 + FLAM_C SINE Alu 6 125 -18 26 0 0 0 chr11 58462081 58462107 -90321365 + AT_rich Low_complexity Low_complexity 1 26 0 291 330 107 40 chr11 58462348 58462572 -90320900 - L2 LINE L2 0 3272 3034 1792 139 0 57 chr11 58462696 58463012 -90320460 - AluSx SINE Alu -14 298 1 2414 85 0 0 chr11 58463240 58463547 -90319925 + AluSg SINE Alu 3 309 -1 1961 77 0 0 chr11 58463928 58464164 -90319308 + AluSq SINE Alu 29 267 -46 962 88 25 6 chr11 58464164 58464324 -90319148 + (GAAA)n Simple_repeat Simple_repeat 2 164 0 22 35 0 0 chr11 58464427 58464456 -90319016 + AT_rich Low_complexity Low_complexity 1 29 0 1916 95 12 58 chr11 58464505 58464831 -90318641 - AluY SINE Alu 0 311 1 681 14 0 0 chr11 58465757 58465830 -90317642 + tRNA-Lys-AAA tRNA tRNA 1 73 -3 711 0 0 0 chr11 58466825 58466898 -90316574 - tRNA-Phe-TTC tRNA tRNA -3 73 1 2203 81 0 11 chr11 58466951 58467263 -90316209 + AluSq SINE Alu 3 311 0 403 73 18 0 chr11 58468129 58468184 -90315288 + U7 snRNA snRNA 2 57 -6 387 259 98 21 chr11 58468206 58468349 -90315123 - MIR SINE MIR 0 262 109 215 301 75 23 chr11 58468453 58468586 -90314886 - L3 LINE CR1 -1006 571 432 2003 86 0 11 chr11 58468713 58468982 -90314490 - AluSg SINE Alu -17 293 28 706 0 0 0 chr11 58469663 58469736 -90313736 - tRNA-Lys-AAA tRNA tRNA -3 73 1 2492 170 39 85 chr11 58470516 58470759 -90312713 - MER34B LTR ERV1 0 565 312 2579 51 3 6 chr11 58470759 58471071 -90312401 + AluSx SINE Alu 1 311 -1 2492 170 39 85 chr11 58471071 58471416 -90312056 - MER34B LTR ERV1 -253 312 4 1596 117 9 4 chr11 58471448 58471678 -90311794 + AluSx SINE Alu 9 239 -73 197 273 118 36 chr11 58471742 58471852 -90311620 - L2 LINE L2 -214 3058 2940 1716 168 27 114 chr11 58472082 58472273 -90311199 - MLT2C2 LTR ERVL -7 457 251 2102 112 3 0 chr11 58472273 58472594 -90310878 + AluSx SINE Alu 1 322 0 1716 168 27 114 chr11 58472594 58472646 -90310826 - MLT2C2 LTR ERVL -213 251 196 2320 101 7 0 chr11 58472646 58472952 -90310520 - AluSx SINE Alu -4 308 1 1716 168 27 114 chr11 58472952 58473111 -90310361 - MLT2C2 LTR ERVL -268 196 92 1711 167 10 10 chr11 58473111 58473411 -90310061 + AluJo SINE Alu 2 301 -11 1716 168 27 114 chr11 58473411 58473450 -90310022 - MLT2C2 LTR ERVL -372 92 51 2561 67 3 0 chr11 58473815 58474127 -90309345 - AluSp SINE Alu 0 313 1 651 142 63 0 chr11 58474499 58474626 -90308846 - MER53 DNA DNA -12 177 43 2167 86 62 0 chr11 58474627 58474919 -90308553 + AluSx SINE Alu 1 310 -2 912 113 8 8 chr11 58475060 58475193 -90308279 - AluSq/x SINE Alu -180 133 1 700 14 0 0 chr11 58475707 58475780 -90307692 - tRNA-Phe-TTC tRNA tRNA -3 73 1 261 273 45 40 chr11 58475984 58476182 -90307290 - L1MC/D LINE L1 -1915 5893 5695 2092 73 4 0 chr11 58476639 58476898 -90306574 + AluSp SINE Alu 37 296 -17 1846 223 98 31 chr11 58477361 58477819 -90305653 + MLT1E2 LTR MaLR 137 625 -1 2282 90 3 34 chr11 58477942 58478122 -90305350 - AluSq SINE Alu 0 313 129 492 18 0 0 chr11 58478122 58478179 -90305293 + (TTTA)n Simple_repeat Simple_repeat 3 59 0 2212 96 0 0 chr11 58478179 58478459 -90305013 - AluSg SINE Alu -30 280 1 2282 90 3 34 chr11 58478459 58478598 -90304874 - AluSq SINE Alu -182 131 3 281 250 0 10 chr11 58478608 58478712 -90304760 + (CATA)n Simple_repeat Simple_repeat 2 104 0 244 213 0 21 chr11 58478718 58478765 -90304707 - MER5B DNA MER1_type -59 119 74 369 0 0 0 chr11 58478771 58478812 -90304660 + (TG)n Simple_repeat Simple_repeat 2 42 0 281 241 69 11 chr11 58478820 58478907 -90304565 + MER5B DNA MER1_type 68 159 -19 189 261 118 84 chr11 58478977 58479039 -90304433 + L2 LINE L2 2289 2347 -967 2018 137 0 7 chr11 58479039 58479332 -90304140 + AluJo SINE Alu 5 295 -17 189 261 118 84 chr11 58479332 58479388 -90304084 + L2 LINE L2 2347 2411 -903 903 295 13 13 chr11 58479534 58479836 -90303636 - AluSx SINE Alu 0 302 1 33 25 0 0 chr11 58479962 58480002 -90303470 + AT_rich Low_complexity Low_complexity 1 40 0 915 133 0 15 chr11 58480115 58480250 -90303222 - FLAM_C SINE Alu 0 133 1 2051 119 0 11 chr11 58480277 58480593 -90302879 + AluSx SINE Alu 1 313 0 2347 92 0 0 chr11 58480666 58480960 -90302512 + AluSg SINE Alu 3 296 -14 727 258 81 32 chr11 58481325 58481573 -90301899 + MIR SINE MIR 2 261 -1 303 341 34 0 chr11 58481908 58481996 -90301476 + L2 LINE L2 3203 3293 -20 22 0 0 0 chr11 58482109 58482131 -90301341 + AT_rich Low_complexity Low_complexity 1 22 0 1188 192 126 53 chr11 58482330 58482578 -90300894 + MER2 DNA MER2_type 4 281 -63 2462 76 7 0 chr11 58482578 58482882 -90300590 - AluSq SINE Alu -7 306 1 1188 192 126 53 chr11 58482882 58482951 -90300521 + MER2 DNA MER2_type 281 344 0 2063 147 0 16 chr11 58483745 58484059 -90299413 - AluSx SINE Alu -3 309 1 324 264 203 18 chr11 58484352 58484515 -90298957 - MIR3 SINE MIR -15 193 1 363 309 29 15 chr11 58485403 58485539 -90297933 + L2 LINE L2 3176 3313 0 344 262 12 0 chr11 58485950 58486034 -90297438 - L2 LINE L2 0 3313 3229 1702 179 0 14 chr11 58486619 58486961 -90296511 + AluJb SINE Alu 1 338 0 370 295 92 54 chr11 58487512 58487936 -90295536 - LTR33 LTR ERVL -69 454 16 2106 90 49 17 chr11 58488022 58488310 -90295162 - AluSx SINE Alu -14 298 2 1505 148 15 44 chr11 58488509 58488677 -90294795 - AluJb SINE Alu -18 294 135 1814 155 7 3 chr11 58488677 58488967 -90294505 - AluSx SINE Alu -21 291 1 1505 148 15 44 chr11 58488967 58489069 -90294403 - AluJb SINE Alu -177 135 32 232 342 90 18 chr11 58489159 58489270 -90294202 - L2 LINE L2 -17 3255 3137 1127 245 65 51 chr11 58489374 58489563 -90293909 + MLT1J LTR MaLR 24 209 -302 2097 125 0 0 chr11 58489563 58489851 -90293621 - AluSx SINE Alu -24 288 1 1127 245 65 51 chr11 58489851 58490087 -90293385 + MLT1J LTR MaLR 209 455 -56 1052 219 41 0 chr11 58490087 58490306 -90293166 - MER58B DNA MER1_type 0 341 114 236 264 0 0 chr11 58490466 58490519 -90292953 + L2 LINE L2 3215 3267 -5 297 278 224 39 chr11 58490708 58490989 -90292483 - L2 LINE L2 -350 2964 2632 218 337 74 42 chr11 58491121 58491216 -90292256 + L2 LINE L2 3126 3223 -49 1427 189 15 8 chr11 58493623 58493882 -90289590 - AluJb SINE Alu -51 261 1 195 345 12 12 chr11 58494170 58494254 -90289218 + L2 LINE L2 3230 3313 0 397 262 70 127 chr11 58494327 58494492 -90288980 + L2 LINE L2 2190 2363 -951 1613 160 0 4 chr11 58494492 58494742 -90288730 - AluJb SINE Alu -6 306 58 397 262 70 127 chr11 58494742 58494977 -90288495 + L2 LINE L2 2363 2567 -747 763 258 79 26 chr11 58494994 58495223 -90288249 + MIR SINE MIR 21 261 -1 1424 181 19 67 chr11 58495230 58495381 -90288091 + AluJo SINE Alu 1 131 -181 2148 131 3 0 chr11 58495381 58495671 -90287801 + AluSx SINE Alu 1 291 -21 1424 181 19 67 chr11 58495671 58495833 -90287639 + AluJo SINE Alu 131 299 -13 2256 114 0 3 chr11 58495833 58496131 -90287341 + AluSg SINE Alu 1 297 -13 1694 97 120 23 chr11 58496360 58496647 -90286825 - AluSx SINE Alu 0 312 1 446 246 66 39 chr11 58496698 58496883 -90286589 - MIR SINE MIR -31 231 42 314 297 99 0 chr11 58497108 58497219 -90286253 + L2 LINE L2 3143 3264 -8 2016 157 12 9 chr11 58497305 58497648 -90285824 + L1PA16 LINE L1 5807 6150 -16 211 257 64 99 chr11 58499012 58499080 -90284392 - MIR3 SINE MIR -11 197 128 285 51 0 0 chr11 58499080 58499119 -90284353 + (CATA)n Simple_repeat Simple_repeat 2 40 0 211 257 64 99 chr11 58499119 58499221 -90284251 - MIR3 SINE MIR -80 128 33 462 245 47 62 chr11 58499830 58500022 -90283450 + MER5A DNA MER1_type 1 189 0 1145 139 11 6 chr11 58501008 58501188 -90282284 - MER20 DNA MER1_type -35 184 4 2196 108 0 3 chr11 58501832 58502127 -90281345 + AluSq SINE Alu 20 313 0 472 186 20 20 chr11 58502146 58502248 -90281224 - L1ME1 LINE L1 -7 6159 6058 232 118 0 0 chr11 58502248 58502282 -90281190 - MER3 DNA MER1_type -160 49 16 353 262 153 38 chr11 58505190 58505373 -90278099 + MIR SINE MIR 49 252 -10 198 0 0 0 chr11 58506353 58506375 -90277097 + (A)n Simple_repeat Simple_repeat 1 22 0 1164 149 6 0 chr11 58506375 58506550 -90276922 + AluSg/x SINE Alu 121 296 -16 1829 131 65 0 chr11 58506725 58507015 -90276457 + AluSp SINE Alu 1 309 -4 716 78 0 0 chr11 58507019 58507109 -90276363 + L1P3 LINE L1 5398 5487 -685 449 115 11 0 chr11 58507312 58507399 -90276073 + (TA)n Simple_repeat Simple_repeat 1 88 0 247 172 124 90 chr11 58507402 58507432 -90276040 - L1ME1 LINE L1 -157 5964 5936 2058 136 0 0 chr11 58507432 58507718 -90275754 - AluSx SINE Alu -26 286 1 247 172 124 90 chr11 58507718 58507832 -90275640 - L1ME1 LINE L1 -185 5936 5815 399 267 67 0 chr11 58507845 58507995 -90275477 - L1ME4a LINE L1 0 6121 5962 824 163 105 12 chr11 58508091 58508312 -90275160 - AluJo SINE Alu -24 288 2 483 269 234 11 chr11 58508341 58508418 -90275054 - L1ME4a LINE L1 -335 5786 5727 1544 164 82 4 chr11 58508418 58508698 -90274774 + AluJo SINE Alu 1 302 -10 483 269 234 11 chr11 58508698 58508988 -90274484 - L1ME4a LINE L1 -394 5727 5337 795 132 16 25 chr11 58509285 58509406 -90274066 + AluJb SINE Alu 3 122 -190 2246 104 3 16 chr11 58509406 58509713 -90273759 - AluSq SINE Alu -10 303 1 490 289 52 0 chr11 58509720 58509855 -90273617 + MIR3 SINE MIR 50 191 -17 1603 154 21 18 chr11 58510171 58510457 -90273015 + AluJo SINE Alu 11 297 -15 1737 158 27 27 chr11 58510463 58510755 -90272717 + AluJb SINE Alu 1 292 -20 195 100 0 0 chr11 58512495 58512525 -90270947 + (TG)n Simple_repeat Simple_repeat 2 31 0 2061 148 0 7 chr11 58513258 58513563 -90269909 - AluSx SINE Alu -9 303 1 2164 124 3 0 chr11 58514640 58514939 -90268533 + AluSq SINE Alu 1 300 -13 2423 70 0 3 chr11 58515018 58515316 -90268156 + AluY SINE Alu 1 297 -14 1542 158 56 42 chr11 58515335 58515470 -90268002 + AluJo SINE Alu 5 137 -175 1952 143 3 0 chr11 58515470 58515763 -90267709 + AluSx SINE Alu 1 294 -18 1542 158 56 42 chr11 58515763 58515912 -90267560 + AluJo SINE Alu 137 293 -19 1915 154 3 0 chr11 58516051 58516344 -90267128 + AluJb SINE Alu 1 294 -18 577 277 33 5 chr11 58516579 58516768 -90266704 - MIR SINE MIR -15 247 54 1020 239 116 64 chr11 58516871 58517353 -90266119 + MLT1J LTR MaLR 1 507 -4 1035 208 87 22 chr11 58518052 58518283 -90265189 + AluJo SINE Alu 44 289 -23 627 247 114 95 chr11 58518690 58519277 -90264195 - L1MC5 LINE L1 -53 7908 7311 735 207 0 0 chr11 58519354 58519470 -90264002 + FLAM_C SINE Alu 1 116 -27 34 0 0 0 chr11 58519471 58519505 -90263967 + AT_rich Low_complexity Low_complexity 1 34 0 3216 23 0 0 chr11 58519620 58519964 -90263508 - SVA Other Other -259 1127 784 1427 220 88 61 chr11 58519966 58520500 -90262972 - L1MC4 LINE L1 -733 7228 6705 295 228 24 134 chr11 58520559 58520686 -90262786 + L2 LINE L2 3182 3294 -19 941 181 0 69 chr11 58520878 58521066 -90262406 - AluJb SINE Alu -137 175 1 1865 167 0 10 chr11 58521518 58521823 -90261649 + AluJb SINE Alu 1 302 -10 677 105 91 35 chr11 58523205 58523348 -90260124 - L1MA5 LINE L1 0 6300 6150 361 133 17 0 chr11 58523700 58523760 -90259712 + U3 snRNA snRNA 8 68 -149 450 329 66 0 chr11 58523817 58523969 -90259503 + MIR SINE MIR 33 194 -68 460 255 91 139 chr11 58524029 58524677 -90258795 + L1MC4 LINE L1 7286 7902 -140 1011 138 28 97 chr11 58524684 58524901 -90258571 + AluJb SINE Alu 81 282 -30 360 0 0 0 chr11 58524908 58524948 -90258524 + (CA)n Simple_repeat Simple_repeat 1 40 0 210 244 0 0 chr11 58524980 58525025 -90258447 + (CCTA)n Simple_repeat Simple_repeat 2 46 0 268 228 32 34 chr11 58525025 58525138 -90258334 + L1MC5 LINE L1 7836 8036 -6 1657 116 136 8 chr11 58525262 58525512 -90257960 - AluSg SINE Alu -18 292 11 249 402 26 39 chr11 58525774 58526008 -90257464 + L2 LINE L2 3029 3259 -13 * 293 306 36 45 chr11 58525983 58526094 -90257378 - L2 LINE L2 0 3313 3204 2324 52 0 21 chr11 58526195 58526518 -90256954 - AluY SINE Alu 0 317 1 189 340 46 46 chr11 58526653 58526806 -90256666 - L2 LINE L2 -441 2873 2721 192 89 0 71 chr11 58526811 58526867 -90256605 + (TTTC)n Simple_repeat Simple_repeat 4 55 0 1455 188 79 14 chr11 58526870 58527162 -90256310 - AluJo SINE Alu -1 311 1 330 294 102 64 chr11 58527172 58527247 -90256225 - L2 LINE L2 -610 2704 2633 2094 106 34 7 chr11 58527247 58527540 -90255932 - AluSx SINE Alu -11 301 1 330 294 102 64 chr11 58527540 58527651 -90255821 - L2 LINE L2 -681 2633 2511 1021 311 0 0 chr11 58527907 58528209 -90255263 - AluSx SINE Alu 0 302 1 323 253 260 20 chr11 58528410 58528556 -90254916 - MER5A DNA MER1_type -5 184 4 1937 122 7 4 chr11 58529219 58529498 -90253974 - AluSq SINE Alu -4 309 30 612 237 174 4 chr11 58529556 58529826 -90253646 - L1ME4a LINE L1 -53 6068 5753 280 200 169 0 chr11 58530231 58530296 -90253176 + L2 LINE L2 3197 3272 0 2277 106 3 0 chr11 58530886 58531189 -90252283 + AluSp SINE Alu 6 309 -4 620 239 54 36 chr11 58531190 58531357 -90252115 - MIR SINE MIR -88 174 5 225 272 109 48 chr11 58531467 58531610 -90251862 - MIR SINE MIR -87 121 7 864 115 24 97 chr11 58532115 58532280 -90251192 - L1PA13 LINE L1 0 6163 6011 2238 127 0 0 chr11 58532824 58533132 -90250340 + AluSx SINE Alu 1 308 -4 445 299 24 6 chr11 58533521 58533685 -90249787 + MLT1J LTR MaLR 339 505 -6 1701 100 0 56 chr11 58533715 58533965 -90249507 + MER46A DNA MER2_type 1 236 0 1981 129 0 34 chr11 58533996 58534192 -90249280 - AluSx SINE Alu 0 312 140 2389 84 0 0 chr11 58534192 58534491 -90248981 - AluSx SINE Alu -13 299 1 1981 129 0 34 chr11 58534491 58534623 -90248849 - AluSx SINE Alu -172 140 5 274 163 0 0 chr11 58534741 58534790 -90248682 + Alu SINE Alu 1 49 -253 1636 148 61 4 chr11 58534917 58535195 -90248277 - AluJb SINE Alu -17 295 2 227 237 92 0 chr11 58535284 58535357 -90248115 + MIR3 SINE MIR 78 158 -50 382 272 212 11 chr11 58535562 58535746 -90247726 - MIR SINE MIR 0 262 42 2425 133 65 59 chr11 58535773 58535820 -90247652 + L1MC1 LINE L1 5842 5887 -446 225 0 0 0 chr11 58535820 58535845 -90247627 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 2215 87 0 4 chr11 58535847 58536124 -90247348 - AluSc SINE Alu -31 278 3 2425 133 65 59 chr11 58536124 58536161 -90247311 + L1MC1 LINE L1 5887 5922 -411 2197 148 24 6 chr11 58536161 58536499 -90246973 - MER2 DNA MER2_type 0 344 1 2425 133 65 59 chr11 58536499 58536899 -90246573 + L1MC1 LINE L1 5922 6333 0 2024 149 0 0 chr11 58537131 58537432 -90246040 + AluSx SINE Alu 1 301 -11 583 332 4 12 chr11 58537669 58537916 -90245556 + AluJb SINE Alu 44 288 -24 2332 84 16 7 chr11 58538117 58538426 -90245046 - AluSx SINE Alu 0 312 1 2287 118 0 3 chr11 58538502 58538815 -90244657 + AluSx SINE Alu 1 312 0 531 297 230 26 chr11 58539000 58539480 -90243992 - L2 LINE L2 -66 3247 2654 4190 136 36 105 chr11 58539564 58540520 -90242952 + L1PA12 LINE L1 5279 6168 0 772 109 8 17 chr11 58540687 58540806 -90242666 + MLT1B LTR MaLR 1 118 -272 550 268 34 56 chr11 58540945 58541124 -90242348 + MLT1J LTR MaLR 170 344 -167 1171 215 88 0 chr11 58541133 58541407 -90242065 + AluJb SINE Alu 1 298 -4 22 0 0 0 chr11 58541409 58541431 -90242041 + AT_rich Low_complexity Low_complexity 1 22 0 358 318 36 9 chr11 58542113 58542223 -90241249 + MIR3 SINE MIR 58 170 -38 204 304 0 0 chr11 58542714 58542770 -90240702 + L2 LINE L2 3254 3309 -4 1706 98 163 0 chr11 58544096 58544364 -90239108 - AluSg SINE Alu 0 308 1 1879 127 55 0 chr11 58544576 58544851 -90238621 - AluSx SINE Alu -22 290 1 1345 170 40 25 chr11 58545507 58545783 -90237689 + AluJo SINE Alu 9 288 -24 681 201 84 13 chr11 58546717 58546871 -90236601 - MIR SINE MIR 0 262 98 25 0 0 0 chr11 58547488 58547513 -90235959 + AT_rich Low_complexity Low_complexity 1 25 0 338 276 40 76 chr11 58548375 58548600 -90234872 + L1MC4a LINE L1 5671 5887 -1921 1846 158 10 3 chr11 58548981 58549279 -90234193 + AluJb SINE Alu 1 300 -12 1359 241 137 29 chr11 58549555 58550150 -90233322 + L2 LINE L2 2650 3313 0 2207 89 3 30 chr11 58550527 58550829 -90232643 + AluSx SINE Alu 1 294 -18 2259 103 0 17 chr11 58551744 58552045 -90231427 + AluSx SINE Alu 1 296 -16 480 234 173 30 chr11 58552056 58552181 -90231291 + L1ME1 LINE L1 5939 6045 -121 1742 175 3 3 chr11 58552181 58552472 -90231000 - AluJo SINE Alu -8 304 14 480 234 173 30 chr11 58552472 58552543 -90230929 + L1ME1 LINE L1 6045 6163 -3 186 43 0 0 chr11 58554291 58554314 -90229158 + (T)n Simple_repeat Simple_repeat 1 23 0 2316 158 25 49 chr11 58555185 58555634 -90227838 - MLT2C2 LTR ERVL -6 458 21 2179 103 0 32 chr11 58555858 58556168 -90227304 - AluSx SINE Alu -8 304 5 540 266 106 25 chr11 58556943 58557142 -90226330 + MIR SINE MIR 29 243 -19 447 381 3 3 chr11 58558274 58558581 -90224891 - AluSx SINE Alu -4 308 2 712 218 135 0 chr11 58558804 58558960 -90224512 - FRAM SINE Alu -1 175 1 1184 241 18 100 chr11 58559040 58559542 -90223930 + LTR37B LTR ERV1 7 467 -1 4357 105 37 15 chr11 58559629 58560297 -90223175 - Tigger1 DNA MER2_type -121 2297 1615 3197 133 71 34 chr11 58560341 58561017 -90222455 + MER21A LTR ERV1 121 925 -6 297 180 98 0 chr11 58561005 58561066 -90222406 - Tigger1 DNA MER2_type -775 1643 1577 * 1054 147 0 0 chr11 58561087 58561243 -90222229 - AluSc SINE Alu -61 248 93 360 80 60 0 chr11 58561256 58561306 -90222166 - Tigger1 DNA MER2_type -828 1590 1538 1718 84 50 0 chr11 58561348 58561587 -90221885 - Tigger1 DNA MER2_type -868 1550 1300 189 0 0 0 chr11 58561692 58561713 -90221759 + (A)n Simple_repeat Simple_repeat 1 21 0 390 351 13 7 chr11 58561893 58562044 -90221428 + MIR SINE MIR 2 153 -109 816 126 0 17 chr11 58562055 58562174 -90221298 + FRAM SINE Alu 52 168 -8 2236 109 0 0 chr11 58562264 58562568 -90220904 + AluSg SINE Alu 1 304 -6 445 282 34 20 chr11 58563274 58563423 -90220049 + MIR SINE MIR 51 201 -61 451 324 56 32 chr11 58563588 58563806 -90219666 + MIR SINE MIR 6 228 -34 372 318 131 5 chr11 58563885 58564083 -90219389 + MIR SINE MIR 13 235 -27 347 292 58 86 chr11 58564702 58564942 -90218530 - L2 LINE L2 -1 3271 3039 225 289 176 56 chr11 58564942 58565084 -90218388 - MER5B DNA MER1_type -3 175 17 193 328 112 9 chr11 58565100 58565216 -90218256 - L2 LINE L2 -555 2759 2632 1430 261 86 16 chr11 58565448 58565925 -90217547 - MLT1G LTR MaLR 0 582 51 358 187 143 147 chr11 58566022 58566295 -90217177 - MLT1L LTR MaLR -322 293 22 539 241 45 0 chr11 58566343 58566476 -90216996 - MER103 DNA DNA -2 164 26 2256 114 3 9 chr11 58566536 58566851 -90216621 - AluSq SINE Alu 0 313 1 1646 195 36 28 chr11 58566873 58567232 -90216240 - MLT1A1 LTR MaLR 0 365 4 1078 277 99 40 chr11 58567757 58567877 -90215595 + LTR33A LTR ERVL 1 113 -410 1741 170 98 12 chr11 58567877 58568213 -90215259 + MLT1A1 LTR MaLR 1 365 0 1078 277 99 40 chr11 58568213 58568586 -90214886 + LTR33A LTR ERVL 113 523 0 192 40 0 0 chr11 58568790 58568815 -90214657 + (T)n Simple_repeat Simple_repeat 1 25 0 329 270 34 11 chr11 58570033 58570122 -90213350 + MIR SINE MIR 164 254 -8 519 328 69 15 chr11 58570149 58570353 -90213119 - MIR SINE MIR -8 254 40 2416 70 0 6 chr11 58570424 58570736 -90212736 + AluY SINE Alu 1 310 -1 1157 228 23 0 chr11 58570787 58571006 -90212466 + MER58A DNA MER1_type 1 224 0 2231 57 0 40 chr11 58571111 58571447 -90212025 + AluY SINE Alu 3 311 0 577 163 0 0 chr11 58571502 58571594 -90211878 + AluJo SINE Alu 51 142 -170 273 104 15 134 chr11 58571626 58571693 -90211779 + AluSc SINE Alu 136 194 -105 302 269 65 0 chr11 58571720 58571813 -90211659 + L1M4 LINE L1 3095 3193 -2953 2226 87 0 7 chr11 58571890 58572176 -90211296 + AluSc SINE Alu 4 287 -22 844 191 71 24 chr11 58572467 58572635 -90210837 - AluJb SINE Alu 0 312 137 951 227 5 5 chr11 58572732 58572917 -90210555 - MER5A DNA MER1_type 0 189 5 960 237 60 103 chr11 58573107 58573172 -90210300 + MLT1H1 LTR MaLR 1 67 -488 1440 196 66 11 chr11 58573172 58573458 -90210014 - AluJo SINE Alu -10 302 1 960 237 60 103 chr11 58573458 58573848 -90209624 + MLT1H1 LTR MaLR 67 469 -86 1759 167 7 0 chr11 58573950 58574243 -90209229 - AluSx SINE Alu -17 295 1 239 324 36 9 chr11 58574478 58574589 -90208883 + L1M3c LINE L1 1 114 -6027 4278 147 18 16 chr11 58574637 58575203 -90208269 + MER50 LTR ERV1 1 571 -163 1765 150 0 16 chr11 58575203 58575510 -90207962 - AluSq SINE Alu -11 302 1 4278 147 18 16 chr11 58575510 58575652 -90207820 + MER50 LTR ERV1 571 711 -23 390 42 0 0 chr11 58575891 58575939 -90207533 + (TG)n Simple_repeat Simple_repeat 2 49 0 326 294 25 0 chr11 58576184 58576303 -90207169 - L1ME LINE L1 -352 5769 5648 408 189 9 18 chr11 58576450 58576561 -90206911 + CT-rich Low_complexity Low_complexity 3 112 0 314 332 83 52 chr11 58576853 58577202 -90206270 - L1ME LINE L1 -1067 5079 4720 12115 143 37 22 chr11 58577224 58580426 -90203046 - L1MA6 LINE L1 0 6300 3054 1133 200 41 25 chr11 58580425 58580447 -90203025 - L1M4c LINE L1 -3916 2818 2798 * 450 0 0 0 chr11 58580447 58580497 -90202975 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 1133 200 41 25 chr11 58580497 58580831 -90202641 - L1M4c LINE L1 -3936 2798 2467 1037 172 6 0 chr11 58580883 58581046 -90202426 - AluJb SINE Alu -26 286 123 4211 235 87 17 chr11 58581046 58581800 -90201672 - L1M4c LINE L1 -4065 1667 1473 5047 151 32 38 chr11 58581800 58582771 -90200701 - LTR5 LTR ERVK 0 969 5 4211 235 87 17 chr11 58582771 58583342 -90200130 - L1M4c LINE L1 -4259 1473 943 1042 326 7 35 chr11 58583651 58584086 -90199386 - L1M4c LINE L1 -5532 1121 699 3022 195 19 16 chr11 58584159 58584674 -90198798 + MLT1F1 LTR MaLR 1 520 -47 2241 136 29 32 chr11 58584674 58585050 -90198422 - THE1C LTR MaLR 0 375 1 3022 195 19 16 chr11 58585050 58585097 -90198375 + MLT1F1 LTR MaLR 520 565 -2 1675 215 78 37 chr11 58585303 58585712 -90197760 + MLT1D LTR MaLR 6 431 -74 8402 112 42 7 chr11 58585740 58586977 -90196495 + Tigger1 DNA MER2_type 22 1301 -1117 3079 207 30 0 chr11 58587095 58587830 -90195642 - L1M4c LINE L1 -4516 2137 1321 1205 264 37 59 chr11 58587848 58588163 -90195309 - L1M4c LINE L1 -5442 1211 890 1519 129 0 26 chr11 58588163 58588395 -90195077 + AluJb SINE Alu 87 312 0 1205 264 37 59 chr11 58588395 58588533 -90194939 - L1M4c LINE L1 -5763 890 514 1002 165 125 20 chr11 58588533 58588733 -90194739 + AluJb SINE Alu 87 307 -5 657 288 68 19 chr11 58588734 58588939 -90194533 - L1M4c LINE L1 -6055 598 384 659 163 0 0 chr11 58588941 58589033 -90194439 + AluJ/FLAM SINE Alu 2 93 -219 1486 165 4 8 chr11 58589729 58589978 -90193494 + AluJo SINE Alu 1 248 -64 1461 130 9 5 chr11 58589980 58590196 -90193276 - AluSq SINE Alu -96 217 1 730 193 0 9 chr11 58590686 58590844 -90192628 - FLAM_C SINE Alu 0 165 9 631 160 9 9 chr11 58591057 58591163 -90192309 + FLAM_C SINE Alu 30 135 -8 1277 262 40 19 chr11 58591375 58591798 -90191674 + L1M4c LINE L1 1398 1933 -4449 1759 220 26 80 chr11 58591889 58592515 -90190957 + L1M4c LINE L1 2914 3505 -2877 490 171 19 48 chr11 58592591 58592696 -90190776 + MER21B LTR ERV1 214 315 -548 2155 128 10 0 chr11 58592698 58593003 -90190469 + AluSg SINE Alu 1 308 -2 367 305 26 39 chr11 58593508 58593662 -90189810 + MIR SINE MIR 37 188 -74 4840 158 32 26 chr11 58594284 58595574 -90187898 - L1MB1 LINE L1 -2 6402 5095 1895 157 0 10 chr11 58595574 58595887 -90187585 + AluJb SINE Alu 1 310 -2 4840 158 32 26 chr11 58595887 58595947 -90187525 - L1MB1 LINE L1 -1309 5095 5037 * 6801 209 22 40 chr11 58595935 58597388 -90186084 - L1MB1 LINE L1 -2129 4253 2837 11080 28 4 108 chr11 58597388 58598936 -90184536 + SVA Other Other 1 1386 0 6801 209 22 40 chr11 58598936 58599278 -90184194 - L1MB1 LINE L1 -3545 2837 2490 718 81 211 16 chr11 58599288 58599411 -90184061 - MSTA LTR MaLR -51 377 231 232 235 0 0 chr11 58599412 58599463 -90184009 - L1MB1 LINE L1 -3886 2498 2448 1736 129 86 0 chr11 58599464 58599745 -90183727 - AluSg SINE Alu 0 304 2 980 89 7 30 chr11 58599749 58599884 -90183588 - AluSq/x SINE Alu -180 132 1 2287 95 0 7 chr11 58599894 58600189 -90183283 - AluSx SINE Alu -19 293 1 5522 93 10 0 chr11 58600323 58601034 -90182438 - L1PA10 LINE L1 0 6168 5451 2207 111 0 37 chr11 58601090 58601414 -90182058 + AluSx SINE Alu 1 312 0 2008 123 18 0 chr11 58601759 58601884 -90181588 + AluSx SINE Alu 2 123 -209 201 39 0 0 chr11 58601884 58601910 -90181562 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 2008 123 18 0 chr11 58601910 58602110 -90181362 + AluSx SINE Alu 123 332 0 3659 157 30 53 chr11 58602115 58602882 -90180590 + L1MC3 LINE L1 6946 7694 -91 334 209 105 19 chr11 58602957 58603062 -90180410 + L2 LINE L2 3118 3231 -82 208 283 22 76 chr11 58603115 58603207 -90180265 + L2 LINE L2 3227 3313 0 276 30 0 0 chr11 58603338 58603385 -90180087 + (TTCC)n Simple_repeat Simple_repeat 1 80 0 276 30 0 0 chr11 58603385 58603418 -90180054 + (TTCC)n Simple_repeat Simple_repeat 3 35 0 2307 96 3 3 chr11 58603928 58604229 -90179243 - AluSg SINE Alu -9 301 1 1371 133 62 5 chr11 58604257 58604468 -90179004 - AluJb SINE Alu -15 297 75 1017 114 0 182 chr11 58604520 58604756 -90178716 - 7SK RNA RNA 0 193 1 523 161 68 59 chr11 58604936 58605054 -90178418 - MLT1B LTR MaLR -271 119 1 220 338 0 0 chr11 58605056 58605127 -90178345 + MIR3 SINE MIR 118 188 -20 485 100 29 0 chr11 58605135 58605205 -90178267 - LTR3 LTR ERVK -1 431 360 3097 113 5 2 chr11 58605283 58605709 -90177763 + LTR3 LTR ERVK 5 431 -1 2006 169 40 19 chr11 58605790 58606162 -90177310 + MLT1B LTR MaLR 1 380 -10 1393 184 31 102 chr11 58606332 58606639 -90176833 - MLT1A1 LTR MaLR -2 363 87 1807 161 0 24 chr11 58606639 58606954 -90176518 - AluSx SINE Alu 0 308 1 1393 184 31 102 chr11 58606954 58607036 -90176436 - MLT1A1 LTR MaLR -278 87 1 1361 184 62 59 chr11 58607414 58607557 -90175915 + AluJb SINE Alu 1 142 -170 2286 106 0 0 chr11 58607557 58607850 -90175622 + AluSg SINE Alu 1 293 -17 1361 184 62 59 chr11 58607850 58607994 -90175478 + AluJb SINE Alu 142 289 -23 306 398 90 4 chr11 58608626 58608882 -90174590 + L3 LINE CR1 233 510 -1067 566 262 235 29 chr11 58608885 58609336 -90174136 - MLT1H LTR MaLR -5 544 1 945 109 39 0 chr11 58609378 58609506 -90173966 - L1PA16 LINE L1 -8 6158 6026 646 310 125 76 chr11 58609515 58609944 -90173528 + L3 LINE CR1 575 982 -595 2314 120 0 0 chr11 58609944 58610253 -90173219 + AluSx SINE Alu 3 311 -1 646 310 125 76 chr11 58610253 58610713 -90172759 + L3 LINE CR1 982 1507 -70 2150 112 14 0 chr11 58610896 58611191 -90172281 - AluSp SINE Alu -3 310 12 371 261 34 0 chr11 58611200 58611288 -90172184 - MER94 DNA DNA -43 91 1 269 295 98 27 chr11 58612437 58612464 -90171008 + L2 LINE L2 3153 3177 -95 2189 109 0 0 chr11 58612464 58612775 -90170697 - AluSx SINE Alu 0 311 1 269 295 98 27 chr11 58612775 58612858 -90170614 + L2 LINE L2 3177 3272 0 518 345 22 9 chr11 58613733 58613962 -90169510 - MIR SINE MIR -27 235 4 2277 105 16 0 chr11 58614795 58615160 -90168312 - AluSx SINE Alu 0 370 1 365 302 99 44 chr11 58616672 58616875 -90166597 + MIR SINE MIR 36 248 -14 296 0 0 49 chr11 58617131 58617172 -90166300 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 1927 167 0 3 chr11 58617509 58617815 -90165657 - AluJo SINE Alu -7 305 1 395 264 101 31 chr11 58618383 58618542 -90164930 - MIR SINE MIR -92 170 1 1623 177 46 3 chr11 58618939 58619221 -90164251 + AluJo SINE Alu 1 294 -18 2020 117 14 7 chr11 58619226 58619533 -90163939 + AluSx SINE Alu 1 309 0 2241 112 3 0 chr11 58620102 58620405 -90163067 - AluSg SINE Alu -6 304 1 695 125 0 0 chr11 58621150 58621254 -90162218 - L1MA5A LINE L1 0 6297 6194 543 332 128 17 chr11 58621258 58621556 -90161916 + L2 LINE L2 2036 2366 -948 22 0 0 0 chr11 58621612 58621634 -90161838 + AT_rich Low_complexity Low_complexity 1 22 0 1989 128 14 10 chr11 58621670 58621967 -90161505 + AluSx SINE Alu 1 298 -14 228 250 0 0 chr11 58622059 58622103 -90161369 - L3 LINE CR1 -7 1570 1527 5849 99 7 60 chr11 58622352 58622709 -90160763 + L1PB2 LINE L1 5147 5521 -630 1430 164 82 21 chr11 58622709 58622989 -90160483 + AluJb SINE Alu 5 301 -11 5849 99 7 60 chr11 58622989 58623685 -90159787 + L1PB2 LINE L1 5521 6150 -1 551 276 26 16 chr11 58623722 58623914 -90159558 + MIR SINE MIR 20 213 -49 2079 97 0 67 chr11 58624185 58624515 -90158957 + AluSq SINE Alu 6 313 0 1532 114 14 14 chr11 58624948 58625167 -90158305 + AluSx SINE Alu 10 228 -84 240 26 0 26 chr11 58625167 58625206 -90158266 + AluSx SINE Alu 264 301 -1 2368 71 3 7 chr11 58625443 58625738 -90157734 + AluY SINE Alu 1 294 -17 205 184 82 20 chr11 58625963 58626012 -90157460 + MIR SINE MIR 92 143 -119 1938 105 0 120 chr11 58626086 58626419 -90157053 - AluSx SINE Alu -19 293 1 345 310 86 23 chr11 58626559 58626733 -90156739 - MIR SINE MIR -11 251 67 7127 129 25 22 chr11 58627936 58628673 -90154799 - Ricksha DNA DNA -9 3245 2512 2058 115 3 0 chr11 58628673 58628961 -90154511 + AluSg SINE Alu 22 310 0 7127 129 25 22 chr11 58628961 58629672 -90153800 - Ricksha DNA DNA -742 2512 1727 2981 169 24 44 chr11 58629652 58629829 -90153643 - Ricksha DNA DNA -1312 734 555 * 264 30 0 0 chr11 58629829 58629862 -90153610 + (TG)n Simple_repeat Simple_repeat 2 34 0 1703 167 0 27 chr11 58629862 58630155 -90153317 - AluJb SINE Alu -27 285 1 2981 169 24 44 chr11 58630155 58630590 -90152882 - Ricksha DNA DNA -1489 557 133 4537 102 2 16 chr11 58630692 58631038 -90152434 - MER41B LTR ERV1 0 635 301 5268 80 6 8 chr11 58631038 58631470 -90152002 + PABL_A LTR ERV1 1 433 -227 2165 110 3 0 chr11 58631470 58631760 -90151712 + AluSp SINE Alu 1 291 -22 5268 80 6 8 chr11 58631760 58631988 -90151484 + PABL_A LTR ERV1 433 660 0 4537 102 2 16 chr11 58631988 58632285 -90151187 - MER41B LTR ERV1 -334 301 1 2486 67 0 3 chr11 58632370 58632667 -90150805 + AluY SINE Alu 1 296 -15 189 107 0 0 chr11 58632667 58632695 -90150777 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 208 206 0 0 chr11 58633005 58633039 -90150433 + L2 LINE L2 3215 3248 -24 216 184 10 163 chr11 58633074 58633172 -90150300 + MIR SINE MIR 124 206 -56 2250 112 0 10 chr11 58633522 58633825 -90149647 - AluSx SINE Alu -12 300 1 821 197 0 0 chr11 58634012 58634164 -90149308 - FRAM SINE Alu -4 172 21 868 193 127 14 chr11 58634694 58634907 -90148565 - MIR SINE MIR -14 248 12 6419 87 0 0 chr11 58635255 58636231 -90147241 - L1PB1 LINE L1 -2 6149 5175 363 191 0 0 chr11 58636231 58636294 -90147178 - AluS SINE Alu -10 292 230 746 129 0 0 chr11 58636294 58636395 -90147077 - AluS SINE Alu -210 102 2 13226 197 18 13 chr11 58636395 58638344 -90145128 - L1 LINE L1 -952 5194 3225 1885 163 0 10 chr11 58638344 58638644 -90144828 - AluSx SINE Alu -15 297 1 13226 197 18 13 chr11 58638644 58639550 -90143922 - L1 LINE L1 -2921 3225 2325 1217 88 0 0 chr11 58639550 58639697 -90143775 + AluSq/x SINE Alu 1 147 -165 441 102 0 0 chr11 58639700 58639759 -90143713 - AluJ/FLAM SINE Alu -252 60 2 319 343 10 0 chr11 58639884 58639986 -90143486 + MIR SINE MIR 38 140 -68 1613 176 4 8 chr11 58641314 58641581 -90141891 - AluJo SINE Alu -17 295 30 684 193 0 9 chr11 58641794 58641952 -90141520 + FLAM_C SINE Alu 9 165 0 2250 107 3 0 chr11 58642442 58642741 -90140731 + AluSx SINE Alu 1 300 -12 201 284 14 14 chr11 58642780 58642854 -90140618 + GA-rich Low_complexity Low_complexity 1 74 0 2392 119 26 5 chr11 58642908 58643295 -90140177 + L1MA4 LINE L1 5890 6284 -16 2193 78 7 20 chr11 58643388 58643724 -90139748 + AluSx SINE Alu 1 332 0 252 0 0 0 chr11 58644035 58644063 -90139409 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 390 21 0 0 chr11 58644062 58644109 -90139363 + (CA)n Simple_repeat Simple_repeat 1 47 0 1722 165 0 58 chr11 58644382 58644710 -90138762 - AluJo SINE Alu -3 309 1 2363 85 0 0 chr11 58645270 58645553 -90137919 + AluSx SINE Alu 3 285 -27 457 256 26 0 chr11 58646192 58646309 -90137163 + L1M3b LINE L1 1 120 -6161 286 203 14 54 chr11 58646361 58646435 -90137037 + L1M3b LINE L1 267 337 -5944 287 335 120 6 chr11 58646496 58646654 -90136818 - MIR SINE MIR -78 184 9 892 152 7 7 chr11 58646718 58646869 -90136603 + L1M3 LINE L1 5670 5820 -360 243 0 0 0 chr11 58646875 58646902 -90136570 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2091 118 4 0 chr11 58646907 58647187 -90136285 - AluSx SINE Alu -31 281 1 192 344 32 0 chr11 58648048 58648141 -90135331 + MIR3 SINE MIR 67 157 -51 2184 102 27 0 chr11 58648223 58648516 -90134956 + AluSq SINE Alu 1 301 -12 2381 97 3 3 chr11 58648742 58649051 -90134421 - AluSq SINE Alu 0 313 5 311 198 0 128 chr11 58649072 58649158 -90134314 - MER41C LTR ERV1 -342 212 138 941 184 0 0 chr11 58649158 58649316 -90134156 - AluJb SINE Alu -18 294 137 909 161 7 7 chr11 58649318 58649467 -90134005 - MER41C LTR ERV1 -405 149 1 2436 158 37 30 chr11 58649467 58649649 -90133823 - L1 LINE L1 -1111 5035 4856 1806 113 15 98 chr11 58649649 58649975 -90133497 + AluSx SINE Alu 2 300 -12 2436 158 37 30 chr11 58649975 58650255 -90133217 - L1 LINE L1 -1290 4856 4570 4962 83 27 53 chr11 58650386 58650732 -90132740 + MER4E LTR ERV1 1 355 -411 2171 70 0 4 chr11 58650732 58650990 -90132482 - AluSq SINE Alu -56 257 1 4962 83 27 53 chr11 58650990 58651430 -90132042 + MER4E LTR ERV1 355 766 0 262 333 77 19 chr11 58651451 58651607 -90131865 + MIR SINE MIR 31 195 -67 2307 89 0 10 chr11 58652476 58652789 -90130683 + AluSx SINE Alu 1 310 -2 438 98 4 7 chr11 58653242 58653477 -90129995 + AluSx SINE Alu 4 297 -15 215 170 0 21 chr11 58654240 58654287 -90129185 + MIR SINE MIR 118 163 -99 334 261 31 31 chr11 58654287 58654417 -90129055 + L1ME3A LINE L1 6041 6170 0 822 173 0 8 chr11 58654700 58654827 -90128645 + FLAM_C SINE Alu 1 126 -17 547 253 121 22 chr11 58655480 58655783 -90127689 + L2 LINE L2 2750 3082 -190 24 0 0 0 chr11 58656607 58656631 -90126841 + AT_rich Low_complexity Low_complexity 1 24 0 1958 100 76 7 chr11 58657578 58657869 -90125603 - AluSq SINE Alu -2 311 1 296 295 53 0 chr11 58658360 58658455 -90125017 - L2 LINE L2 -4 3268 3169 353 235 51 10 chr11 58662365 58662463 -90121009 + MIR SINE MIR 50 151 -111 1971 162 0 0 chr11 58663596 58663893 -90119579 + AluJb SINE Alu 1 297 -15 2229 68 47 7 chr11 58663972 58664268 -90119204 + AluSq SINE Alu 1 308 -5 2106 101 45 0 chr11 58664291 58664578 -90118894 + AluSx SINE Alu 1 300 -12 201 284 14 14 chr11 58664617 58664691 -90118781 + GA-rich Low_complexity Low_complexity 1 74 0 2392 119 26 5 chr11 58664745 58665132 -90118340 + L1MA4 LINE L1 5890 6284 -16 2164 82 7 20 chr11 58665225 58665561 -90117911 + AluSx SINE Alu 1 332 0 270 0 0 0 chr11 58665872 58665902 -90117570 + (TC)n Simple_repeat Simple_repeat 1 30 0 * 372 22 0 0 chr11 58665901 58665946 -90117526 + (CA)n Simple_repeat Simple_repeat 1 45 0 225 204 129 0 chr11 58666120 58666213 -90117259 - MER113 DNA MER1_type? -411 110 6 1168 161 4 39 chr11 58666213 58666391 -90117081 - AluJo SINE Alu -5 307 137 1914 85 27 109 chr11 58666391 58666720 -90116752 - AluYb8 SINE Alu -16 302 1 1168 161 4 39 chr11 58666720 58666771 -90116701 - AluJo SINE Alu -175 137 86 1371 48 6 0 chr11 58666785 58666952 -90116520 - L1PA4 LINE L1 -8 6147 5980 1080 199 60 108 chr11 58667077 58667294 -90116178 + LTR37A LTR ERV1 31 220 -206 2025 135 0 7 chr11 58667294 58667583 -90115889 - AluSx SINE Alu -25 287 1 1080 199 60 108 chr11 58667583 58667781 -90115691 + LTR37A LTR ERV1 220 426 0 1844 135 3 7 chr11 58667975 58668257 -90115215 + AluJb SINE Alu 1 281 -31 198 0 0 0 chr11 58668260 58668282 -90115190 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 731 265 46 23 chr11 58671235 58671454 -90112018 + MIR SINE MIR 7 230 -32 1958 160 0 7 chr11 58671820 58672120 -90111352 + AluSx SINE Alu 1 298 -14 949 121 0 0 chr11 58672178 58672310 -90111162 + AluSg/x SINE Alu 162 293 -17 1346 98 11 0 chr11 58673745 58673928 -90109544 - MER30B DNA MER1_type -5 185 1 304 282 30 15 chr11 58674881 58675012 -90108460 + GA-rich Low_complexity Low_complexity 4 136 0 1919 127 0 46 chr11 58675018 58675325 -90108147 + AluY SINE Alu 1 293 -18 426 296 28 14 chr11 58675644 58675790 -90107682 + MIR SINE MIR 36 182 -58 2332 116 30 25 chr11 58676800 58677162 -90106310 - THE1B LTR MaLR 0 364 1 217 254 0 0 chr11 58679086 58679141 -90104331 + (TTA)n Simple_repeat Simple_repeat 3 57 0 270 275 11 22 chr11 58679167 58679258 -90104214 - MIR SINE MIR -103 105 16 2322 105 7 0 chr11 58679711 58680016 -90103456 - AluSq SINE Alu -6 307 1 1999 139 0 47 chr11 58680424 58680741 -90102731 - AluJo SINE Alu -10 302 1 1251 253 92 12 chr11 58681918 58682452 -90101020 + L2 LINE L2 2739 3313 0 1155 223 237 36 chr11 58682550 58683044 -90100428 + MLT1E LTR MaLR 1 593 0 1420 194 5 92 chr11 58683121 58683492 -90099980 + MLT1D LTR MaLR 2 340 -165 4524 34 4 0 chr11 58683616 58684142 -90099330 - L1PA3 LINE L1 0 6155 5628 823 142 121 0 chr11 58684635 58684776 -90098696 + MLT1D LTR MaLR 348 505 0 2133 136 3 0 chr11 58685259 58685567 -90097905 - AluSx SINE Alu -3 309 1 686 130 0 0 chr11 58685683 58685791 -90097681 - AluSg/x SINE Alu -17 293 186 1577 91 14 23 chr11 58685791 58686012 -90097460 - AluSq SINE Alu -94 219 1 2931 149 68 10 chr11 58686263 58686781 -90096691 + MER44D DNA MER2_type 1 603 -2 284 373 62 25 chr11 58687008 58687252 -90096220 - L2 LINE L2 -212 3060 2808 456 316 23 17 chr11 58687324 58687498 -90095974 + MER5B DNA MER1_type 4 178 0 2270 92 3 0 chr11 58688004 58688297 -90095175 - AluSp SINE Alu -18 295 2 21 0 0 0 chr11 58691038 58691059 -90092413 + AT_rich Low_complexity Low_complexity 1 21 0 222 279 18 54 chr11 58691239 58691350 -90092122 + MIR SINE MIR 29 135 -73 361 283 67 44 chr11 58691353 58691533 -90091939 - LTR16A1 LTR ERVL -9 448 265 1360 152 71 71 chr11 58692424 58692721 -90090751 + AluJo SINE Alu 1 297 -15 965 248 73 16 chr11 58693059 58693374 -90090098 + L1MB7 LINE L1 20 352 -6190 528 177 30 55 chr11 58693431 58693595 -90089877 + L1MB7 LINE L1 3954 4113 -2531 23613 166 25 38 chr11 58693597 58698989 -90084483 + L1P4 LINE L1 2 5324 -844 2243 97 0 13 chr11 58698989 58699287 -90084185 + AluSx SINE Alu 5 298 -14 23613 166 25 38 chr11 58699287 58699649 -90083823 + L1P4 LINE L1 5324 5689 -479 4004 83 15 0 chr11 58699649 58700192 -90083280 + L1PA10 LINE L1 5615 6167 -1 1896 190 28 153 chr11 58700203 58700340 -90083132 + L1MB7 LINE L1 4089 4242 -2402 3012 75 48 0 chr11 58700340 58700755 -90082717 + L1PA11 LINE L1 5737 6171 -3 1896 190 28 153 chr11 58700755 58701275 -90082197 + L1MB7 LINE L1 4242 4605 -2039 1836 143 0 14 chr11 58701275 58701554 -90081918 + AluSx SINE Alu 1 275 -37 1896 190 28 153 chr11 58701554 58701795 -90081677 + L1MB7 LINE L1 4605 4875 -1769 288 260 0 0 chr11 58701876 58701953 -90081519 - L1M4 LINE L1 -474 5700 5624 535 223 9 0 chr11 58702218 58702330 -90081142 + MIR SINE MIR 67 179 -83 1392 181 64 6 chr11 58702941 58703404 -90080068 + L1MB7 LINE L1 6070 6623 -59 1867 114 30 4 chr11 58704178 58704442 -90079030 - AluSx SINE Alu -6 306 36 2048 114 10 17 chr11 58704695 58704993 -90078479 - AluY SINE Alu -15 296 1 321 263 11 21 chr11 58705021 58705116 -90078356 + L1M4 LINE L1 3662 3755 -2391 745 253 28 11 chr11 58707693 58707871 -90075601 - MER5A DNA MER1_type -1 188 8 360 216 230 34 chr11 58708016 58708164 -90075308 - MER5A DNA MER1_type -11 178 2 23 0 0 0 chr11 58708615 58708638 -90074834 + AT_rich Low_complexity Low_complexity 1 23 0 277 270 0 0 chr11 58708753 58708816 -90074656 + Zaphod DNA AcHobo 5 67 -3964 1256 260 72 78 chr11 58708888 58709404 -90074068 + MER115 DNA AcHobo 178 690 -3 376 103 0 175 chr11 58709437 58709534 -90073938 + MADE1 DNA Mariner 1 80 0 394 287 39 31 chr11 58710001 58710130 -90073342 - L2 LINE L2 -9 3263 3134 22 0 0 0 chr11 58710325 58710347 -90073125 + AT_rich Low_complexity Low_complexity 1 22 0 586 272 103 5 chr11 58710767 58710951 -90072521 - MIR SINE MIR 0 262 61 525 354 72 35 chr11 58710955 58711387 -90072085 - L2 LINE L2 -919 2395 1948 424 135 46 192 chr11 58711387 58711533 -90071939 + L1MB8 LINE L1 5196 5362 -799 1942 154 7 17 chr11 58711533 58711831 -90071641 + AluSx SINE Alu 2 296 -16 315 0 0 0 chr11 58711840 58711875 -90071597 + (TG)n Simple_repeat Simple_repeat 2 36 0 424 135 46 192 chr11 58711875 58711953 -90071519 + L1MB8 LINE L1 5371 5418 -743 2082 166 43 55 chr11 58711965 58712110 -90071362 + L1MB8 LINE L1 5610 5755 -423 1658 187 17 3 chr11 58712110 58712399 -90071073 + AluJb SINE Alu 1 293 -19 2082 166 43 55 chr11 58712399 58712478 -90070994 + L1MB8 LINE L1 5755 5833 -345 2314 104 0 0 chr11 58712478 58712775 -90070697 + AluSq SINE Alu 1 297 -16 2082 166 43 55 chr11 58712775 58713080 -90070392 + L1MB8 LINE L1 5833 6134 -44 441 285 150 19 chr11 58713588 58713855 -90069617 - MLT1H LTR MaLR 0 549 241 759 297 162 6 chr11 58714069 58714396 -90069076 - L2 LINE L2 -1064 2250 1873 726 215 45 8 chr11 58714396 58714638 -90068834 + L1MA2 LINE L1 3385 3635 -3930 326 147 0 9 chr11 58714638 58714702 -90068770 + Alu SINE Alu 1 52 -251 5477 206 18 10 chr11 58714717 58716109 -90067363 + L1MA2 LINE L1 3798 5200 -2365 297 162 0 54 chr11 58716119 58716193 -90067279 + L1MA2 LINE L1 5331 5400 -2165 231 59 0 0 chr11 58716196 58716230 -90067242 + L1P5 LINE L1 5800 5833 -318 434 125 62 0 chr11 58716235 58716315 -90067157 - L1PB2 LINE L1 -227 5924 5840 2210 168 39 98 chr11 58716325 58716803 -90066669 + L1MA2 LINE L1 6637 7037 -686 2031 116 3 14 chr11 58716803 58717118 -90066354 + AluSq SINE Alu 5 316 0 2210 168 39 98 chr11 58717118 58717469 -90066003 + L1MA2 LINE L1 7037 7407 -316 1665 202 90 24 chr11 58717470 58717925 -90065547 - MLT2B1 LTR ERVL -35 485 1 6218 86 18 14 chr11 58718246 58719195 -90064277 - L1MA2 LINE L1 0 6304 5352 237 348 135 45 chr11 58719862 58720239 -90063233 - L3 LINE CR1 -22 1555 1145 26 30 0 0 chr11 58720687 58720720 -90062752 + AT_rich Low_complexity Low_complexity 1 33 0 222 339 102 17 chr11 58721007 58721184 -90062288 - MIR SINE MIR -51 211 20 239 250 0 0 chr11 58721603 58721651 -90061821 + MIR SINE MIR 32 79 -129 293 228 56 72 chr11 58722520 58722651 -90060821 + MIR SINE MIR 61 192 -60 1841 137 17 0 chr11 58722942 58723241 -90060231 + MER7A DNA MER2_type 45 346 0 324 70 0 0 chr11 58723726 58723769 -90059703 + (CA)n Simple_repeat Simple_repeat 2 44 0 352 330 49 49 chr11 58724075 58724260 -90059212 + MIR3 SINE MIR 20 204 -4 2119 97 19 7 chr11 58725648 58725956 -90057516 + AluSq SINE Alu 1 312 -1 1232 148 67 9 chr11 58725963 58726186 -90057286 - LTR57 LTR ERVL -135 276 41 459 282 9 0 chr11 58726672 58726782 -90056690 - MER81 DNA DNA 0 114 4 835 82 0 9 chr11 58727059 58727169 -90056303 - AluSp/q SINE Alu -17 296 188 1549 91 14 23 chr11 58727169 58727390 -90056082 - AluSq SINE Alu -94 219 1 2931 149 68 10 chr11 58727641 58728159 -90055313 + MER44D DNA MER2_type 1 603 -2 228 354 62 21 chr11 58728162 58728306 -90055166 - MIR SINE MIR -112 150 1 284 373 62 25 chr11 58728386 58728630 -90054842 - L2 LINE L2 -212 3060 2808 449 316 23 18 chr11 58728702 58728873 -90054599 + MER5B DNA MER1_type 4 175 -3 25 31 0 0 chr11 58728896 58728928 -90054544 + AT_rich Low_complexity Low_complexity 1 32 0 202 311 87 39 chr11 58729476 58729579 -90053893 + L2 LINE L2 2944 3051 -221 338 198 125 10 chr11 58729690 58729786 -90053686 - L2 LINE L2 -16 3297 3191 669 259 37 11 chr11 58730707 58730896 -90052576 + MIR SINE MIR 59 252 -10 241 250 0 0 chr11 58731730 58731782 -90051690 - Charlie4 DNA MER1_type 0 1961 1910 839 155 0 0 chr11 58731834 58731963 -90051509 - FLAM_C SINE Alu -6 137 9 481 315 13 13 chr11 58732546 58732695 -90050777 + MER5A DNA MER1_type 35 183 -6 201 265 0 0 chr11 58733389 58733438 -90050034 + MIR SINE MIR 51 99 -109 4684 104 33 8 chr11 58734041 58734764 -90048708 + L1PA13 LINE L1 5420 6160 -3 2307 106 3 0 chr11 58734813 58735114 -90048358 - AluSp SINE Alu -11 302 1 273 26 0 0 chr11 58735380 58735451 -90048021 + L1MA3 LINE L1 6267 6337 0 2251 92 0 3 chr11 58735681 58735974 -90047498 + AluSc SINE Alu 1 292 -17 2133 136 3 0 chr11 58736091 58736399 -90047073 + AluSx SINE Alu 1 309 -3 828 142 121 0 chr11 58736882 58737023 -90046449 - MLT1D LTR MaLR 0 505 348 4727 34 4 0 chr11 58737516 58738042 -90045430 + L1PA3 LINE L1 5628 6155 0 1413 194 5 92 chr11 58738166 58738537 -90044935 - MLT1D LTR MaLR -165 340 2 1307 217 237 36 chr11 58738614 58739108 -90044364 - MLT1E LTR MaLR 0 593 1 1408 249 91 12 chr11 58739206 58739741 -90043731 - L2 LINE L2 0 3313 2739 197 194 269 15 chr11 58740006 58740073 -90043399 - MIR SINE MIR -79 129 46 1984 139 0 47 chr11 58740918 58741235 -90042237 + AluJo SINE Alu 1 302 -10 2308 105 7 0 chr11 58741643 58741948 -90041524 + AluSq SINE Alu 1 307 -6 297 264 76 90 chr11 58742399 58742543 -90040929 + MIR SINE MIR 16 123 -85 356 234 175 7 chr11 58744567 58744704 -90038768 + MIR SINE MIR 100 259 -3 287 351 7 23 chr11 58744980 58745124 -90038348 + MIR SINE MIR 23 147 -61 26 0 0 0 chr11 58745206 58745232 -90038240 + AT_rich Low_complexity Low_complexity 1 26 0 2365 106 0 0 chr11 58746932 58747244 -90036228 + AluSx SINE Alu 1 312 0 904 269 94 55 chr11 58747853 58748340 -90035132 - MLT1K LTR MaLR 0 588 83 252 259 52 0 chr11 58748518 58748576 -90034896 - L2 LINE L2 -28 3244 3184 270 308 0 0 chr11 58749106 58749171 -90034301 - L2 LINE L2 -5 3267 3203 21 36 0 0 chr11 58749524 58749552 -90033920 + AT_rich Low_complexity Low_complexity 1 28 0 318 98 0 0 chr11 58750616 58750657 -90032815 + Alu SINE Alu 1 41 -267 2100 94 42 0 chr11 58750657 58750943 -90032529 + AluSp SINE Alu 11 308 -5 1941 140 3 3 chr11 58751391 58751850 -90031622 + AluSx SINE Alu 3 461 0 452 302 16 8 chr11 58752015 58752144 -90031328 - MIR SINE MIR -113 149 20 2375 94 0 0 chr11 58752539 58752838 -90030634 - AluSq SINE Alu -14 299 1 464 271 104 22 chr11 58752916 58753281 -90030191 - L1ME4a LINE L1 0 6121 5727 216 0 0 0 chr11 58753384 58753408 -90030064 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 997 135 0 0 chr11 58753426 58753567 -90029905 - AluJo SINE Alu -171 141 1 2359 68 25 16 chr11 58753576 58753898 -90029574 - L1PA13 LINE L1 -1 6162 5838 504 76 0 0 chr11 58753898 58753964 -90029508 + L1P4 LINE L1 5707 5772 -393 488 191 85 0 chr11 58754079 58754173 -90029299 + FRAM SINE Alu 50 151 -25 195 42 0 0 chr11 58754173 58754197 -90029275 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 212 204 0 19 chr11 58754445 58754499 -90028973 + (TTTA)n Simple_repeat Simple_repeat 3 55 0 260 137 20 0 chr11 58754544 58754595 -90028877 + (TA)n Simple_repeat Simple_repeat 1 52 0 239 308 39 29 chr11 58754642 58754746 -90028726 - MIR SINE MIR -67 141 37 291 336 115 8 chr11 58755189 58755424 -90028048 + MIR SINE MIR 3 262 0 465 84 0 0 chr11 58755461 58755532 -90027940 + L1MA3 LINE L1 6235 6305 0 2247 70 0 4 chr11 58755572 58755845 -90027627 + AluY SINE Alu 35 306 -5 281 364 43 0 chr11 58756140 58756280 -90027192 - MIR SINE MIR 0 262 117 24 53 0 0 chr11 58757113 58757151 -90026321 + AT_rich Low_complexity Low_complexity 1 38 0 245 214 68 0 chr11 58757181 58757298 -90026174 + (TTATA)n Simple_repeat Simple_repeat 1 125 0 275 288 0 0 chr11 58757357 58757430 -90026042 + L1ME4a LINE L1 5532 5604 -517 2114 126 3 7 chr11 58757431 58757733 -90025739 + AluSp SINE Alu 1 301 -12 427 227 65 39 chr11 58758143 58758297 -90025175 + L1ME4a LINE L1 5708 5865 -256 414 39 0 0 chr11 58758581 58758633 -90024839 + (TG)n Simple_repeat Simple_repeat 1 52 0 1811 113 16 16 chr11 58758860 58759139 -90024333 - AluSx SINE Alu 0 307 29 236 223 0 53 chr11 58759140 58759234 -90024238 + (TA)n Simple_repeat Simple_repeat 2 90 0 5662 156 18 32 chr11 58759519 58759885 -90023587 + L1PA16 LINE L1 4801 5170 -996 2313 112 3 0 chr11 58759885 58760197 -90023275 + AluSq SINE Alu 1 313 0 5662 156 18 32 chr11 58760197 58760976 -90022496 + L1PA16 LINE L1 5170 5927 -239 1611 202 0 16 chr11 58760976 58761283 -90022189 + AluJb SINE Alu 1 302 -10 5662 156 18 32 chr11 58761283 58761501 -90021971 + L1PA16 LINE L1 5927 6146 -20 21 0 0 0 chr11 58761501 58761522 -90021950 + AT_rich Low_complexity Low_complexity 1 21 0 2551 38 0 3 chr11 58761532 58761825 -90021647 + AluY SINE Alu 1 292 -19 26 0 0 0 chr11 58762207 58762233 -90021239 + AT_rich Low_complexity Low_complexity 1 26 0 219 338 103 0 chr11 58762374 58762442 -90021030 + L2 LINE L2 3160 3234 -38 24 32 0 0 chr11 58762442 58762473 -90020999 + AT_rich Low_complexity Low_complexity 1 31 0 227 342 46 40 chr11 58762540 58762692 -90020780 + MIR3 SINE MIR 34 186 -22 711 217 0 21 chr11 58762935 58763078 -90020394 + AluJb SINE Alu 66 205 -107 2161 144 0 0 chr11 58763630 58763936 -90019536 + AluSx SINE Alu 1 306 -6 2423 79 0 0 chr11 58763938 58764241 -90019231 + AluY SINE Alu 1 303 -8 28 0 0 0 chr11 58764348 58764376 -90019096 + AT_rich Low_complexity Low_complexity 1 28 0 1744 184 13 0 chr11 58764382 58764687 -90018785 - AluJo SINE Alu -3 309 1 2190 132 0 0 chr11 58764806 58765116 -90018356 + AluSq SINE Alu 1 310 -3 232 254 46 52 chr11 58765152 58765325 -90018147 + L1P4 LINE L1 5270 5441 -727 1575 186 31 78 chr11 58765781 58766167 -90017305 + MLT1B LTR MaLR 1 368 -22 827 169 8 0 chr11 58766197 58766327 -90017145 - FLAM_C SINE Alu -2 131 1 273 128 0 0 chr11 58766327 58766366 -90017106 + MLT1B LTR MaLR 352 390 0 895 124 0 28 chr11 58766459 58766604 -90016868 - MLT1C LTR MaLR -25 442 302 251 150 0 0 chr11 58766608 58766648 -90016824 - MLT1C LTR MaLR -397 70 31 207 146 0 0 chr11 58766654 58766695 -90016777 + (CA)n Simple_repeat Simple_repeat 1 41 0 318 282 122 29 chr11 58767441 58767761 -90015711 + L1ME LINE L1 5431 5757 -364 241 119 0 24 chr11 58767991 58768033 -90015439 + L2 LINE L2 3269 3309 -4 2239 129 3 0 chr11 58768294 58768605 -90014867 - AluSx SINE Alu 0 312 1 234 174 0 0 chr11 58768757 58768803 -90014669 + (CA)n Simple_repeat Simple_repeat 2 47 0 1994 161 22 9 chr11 58768803 58769352 -90014120 - L1M2 LINE L1 -691 5600 5045 568 144 21 10 chr11 58769352 58769449 -90014023 + MER4A LTR ERV1 1 98 -566 1904 133 3 24 chr11 58769449 58769802 -90013670 + MER4A LTR ERV1 261 664 0 2899 85 63 26 chr11 58769805 58770496 -90012976 + MER4A-int LTR ERV1 1 833 -5765 280 189 0 38 chr11 58770509 58770562 -90012910 + LTR49 LTR ERV1 263 313 -282 2465 158 112 39 chr11 58770582 58771196 -90012276 + MER4A-int LTR ERV1 993 1651 -4947 640 131 0 10 chr11 58771228 58771327 -90012145 + MER4A LTR ERV1 1 98 -566 1842 159 3 22 chr11 58771327 58771679 -90011793 + MER4A LTR ERV1 261 664 0 1870 174 18 97 chr11 58771696 58772041 -90011431 - MER41C LTR ERV1 0 554 252 2352 98 3 3 chr11 58772041 58772348 -90011124 - AluSq SINE Alu -2 311 5 1870 174 18 97 chr11 58772348 58772455 -90011017 - MER41C LTR ERV1 -302 252 138 925 184 0 0 chr11 58772455 58772613 -90010859 - AluJb SINE Alu -18 294 137 909 161 7 7 chr11 58772615 58772764 -90010708 - MER41C LTR ERV1 -405 149 1 2476 153 36 36 chr11 58772764 58772946 -90010526 - L1M2 LINE L1 -1111 5035 4854 1785 113 15 98 chr11 58772946 58773272 -90010200 + AluSx SINE Alu 2 300 -12 2476 153 36 36 chr11 58773272 58773561 -90009911 - L1M2 LINE L1 -1291 4855 4564 5222 83 27 53 chr11 58773683 58774029 -90009443 + MER4E LTR ERV1 1 355 -411 2145 70 0 4 chr11 58774029 58774287 -90009185 - AluSq SINE Alu -56 257 1 5222 83 27 53 chr11 58774287 58774727 -90008745 + MER4E LTR ERV1 355 766 0 306 333 77 19 chr11 58774748 58774904 -90008568 + MIR SINE MIR 31 195 -67 2257 89 0 13 chr11 58775773 58776087 -90007385 + AluSx SINE Alu 1 310 -2 286 293 9 52 chr11 58776328 58776444 -90007028 - L2 LINE L2 -1 3312 3202 448 98 4 7 chr11 58776541 58776777 -90006695 + AluSx SINE Alu 4 298 -14 230 170 0 21 chr11 58777538 58777585 -90005887 + MIR SINE MIR 118 163 -99 344 261 31 31 chr11 58777585 58777715 -90005757 + L1ME3A LINE L1 6041 6170 0 818 173 0 8 chr11 58777998 58778125 -90005347 + FLAM_C SINE Alu 1 126 -17 626 253 121 22 chr11 58778778 58779081 -90004391 + L2 LINE L2 2750 3082 -190 24 0 0 0 chr11 58779905 58779929 -90003543 + AT_rich Low_complexity Low_complexity 1 24 0 2064 100 72 0 chr11 58780875 58781165 -90002307 - AluSq SINE Alu -2 311 1 325 295 53 0 chr11 58781656 58781751 -90001721 - L2 LINE L2 -4 3268 3169 384 235 51 10 chr11 58785660 58785758 -89997714 + MIR SINE MIR 50 151 -111 1951 162 0 0 chr11 58786891 58787188 -89996284 + AluJb SINE Alu 1 297 -15 2203 68 47 7 chr11 58787267 58787563 -89995909 + AluSq SINE Alu 1 308 -5 2058 102 46 0 chr11 58787586 58787870 -89995602 + AluSx SINE Alu 1 297 -15 641 257 37 11 chr11 58788016 58788203 -89995269 + MIR SINE MIR 70 261 -1 1786 165 0 0 chr11 58788961 58789252 -89994220 - AluJo SINE Alu -21 291 1 341 316 61 0 chr11 58789816 58789914 -89993558 + MIR SINE MIR 48 151 -111 279 143 0 0 chr11 58791167 58791209 -89992263 + L2 LINE L2 3258 3299 -14 212 122 82 0 chr11 58791963 58792012 -89991460 + A-rich Low_complexity Low_complexity 3 55 0 746 139 9 0 chr11 58792165 58792280 -89991192 + AluJb SINE Alu 190 305 -7 208 350 29 19 chr11 58794062 58794165 -89989307 + MIR SINE MIR 25 128 -80 825 265 46 23 chr11 58795753 58795972 -89987500 + MIR SINE MIR 7 230 -32 1839 160 0 7 chr11 58796338 58796638 -89986834 + AluSx SINE Alu 1 298 -14 982 98 0 0 chr11 58796695 58796827 -89986645 + AluSg/x SINE Alu 164 295 -17 200 319 49 43 chr11 58797342 58797505 -89985967 + MER5A DNA MER1_type 21 184 -5 261 342 112 47 chr11 58797681 58798084 -89985388 - L2 LINE L2 -3 3269 2841 1152 111 12 12 chr11 58798272 58798443 -89985029 - MER30B DNA MER1_type -19 171 1 339 281 23 35 chr11 58799396 58799533 -89983939 + GA-rich Low_complexity Low_complexity 4 140 -32 2220 75 6 35 chr11 58799533 58799851 -89983621 + AluY SINE Alu 1 309 -2 339 281 23 35 chr11 58799851 58799884 -89983588 + GA-rich Low_complexity Low_complexity 140 172 0 1877 160 3 3 chr11 58800452 58800764 -89982708 + AluJb SINE Alu 1 312 0 186 240 250 19 chr11 58800991 58801095 -89982377 - MIR SINE MIR -82 180 53 2338 116 30 25 chr11 58801235 58801597 -89981875 + THE1B LTR MaLR 1 364 0 473 296 28 14 chr11 58802607 58802753 -89980719 - MIR SINE MIR -58 150 36 2071 107 0 20 chr11 58803072 58803372 -89980100 - AluSx SINE Alu -18 294 1 540 333 91 13 chr11 58803416 58803647 -89979825 + MIR SINE MIR 6 254 -8 339 294 39 10 chr11 58803674 58803776 -89979696 - MIR SINE MIR -8 254 150 22 0 0 0 chr11 58804975 58804997 -89978475 + AT_rich Low_complexity Low_complexity 1 22 0 1104 283 99 40 chr11 58805211 58805584 -89977888 - LTR33A LTR ERVL 0 523 113 1533 180 105 9 chr11 58805584 58805917 -89977555 - MLT1A1 LTR MaLR 0 365 1 1104 283 99 40 chr11 58805917 58806037 -89977435 - LTR33A LTR ERVL -410 113 1 1548 195 36 28 chr11 58806562 58806921 -89976551 + MLT1A1 LTR MaLR 4 365 0 2156 113 0 10 chr11 58806948 58807258 -89976214 + AluSq SINE Alu 7 313 0 526 241 45 0 chr11 58807318 58807451 -89976021 + MER103 DNA DNA 26 164 -2 381 194 143 147 chr11 58807499 58807772 -89975700 + MLT1L LTR MaLR 22 293 -322 1433 254 122 63 chr11 58807869 58808346 -89975126 + MLT1G LTR MaLR 51 582 0 203 328 112 9 chr11 58808578 58808694 -89974778 + L2 LINE L2 2632 2759 -555 229 289 176 56 chr11 58808710 58808852 -89974620 + MER5B DNA MER1_type 17 175 -3 * 345 276 66 95 chr11 58808852 58809092 -89974380 + L2 LINE L2 3039 3271 -1 425 315 132 0 chr11 58809711 58809908 -89973564 - MIR SINE MIR -27 235 13 477 322 56 32 chr11 58809987 58810205 -89973267 - MIR SINE MIR -34 228 6 464 282 34 20 chr11 58810370 58810519 -89972953 - MIR SINE MIR -61 201 51 2141 109 0 0 chr11 58811225 58811529 -89971943 - AluSg SINE Alu -6 304 1 807 127 0 8 chr11 58811619 58811737 -89971735 - FRAM SINE Alu -8 168 52 403 351 13 7 chr11 58811748 58811899 -89971573 - MIR SINE MIR -109 153 2 2055 119 33 0 chr11 58812079 58812381 -89971091 - AluSx SINE Alu 0 312 1 265 314 23 0 chr11 58812922 58813008 -89970464 - MIR SINE MIR -15 247 160 351 0 0 0 chr11 58813065 58813104 -89970368 + (TG)n Simple_repeat Simple_repeat 2 40 0 609 259 24 6 chr11 58813141 58813307 -89970165 + MIR SINE MIR 94 262 0 322 297 68 9 chr11 58813322 58813448 -89970024 - MIR SINE MIR -70 138 30 181 403 8 8 chr11 58814226 58814345 -89969127 + L2 LINE L2 2715 2833 -481 821 181 0 0 chr11 58814711 58814844 -89968628 - AluJb SINE Alu -40 272 140 553 185 0 0 chr11 58814843 58814935 -89968537 - AluS SINE Alu -219 93 2 * 373 182 28 17 chr11 58815658 58815834 -89967638 + (CA)n Simple_repeat Simple_repeat 2 179 0 320 150 16 70 chr11 58815896 58816083 -89967389 + (CA)n Simple_repeat Simple_repeat 1 177 0 244 202 21 7 chr11 58816095 58816249 -89967223 + (CA)n Simple_repeat Simple_repeat 1 156 0 340 318 125 0 chr11 58816536 58816712 -89966760 + MIR SINE MIR 47 244 -18 237 33 0 0 chr11 58816785 58816815 -89966657 + (TCC)n Simple_repeat Simple_repeat 1 30 0 422 49 0 49 chr11 58816949 58817010 -89966462 + L1P5 LINE L1 5723 5780 -376 773 189 0 0 chr11 58817035 58817162 -89966310 + L1PB4 LINE L1 6008 6134 -22 268 189 19 0 chr11 58817185 58817238 -89966234 + MIR SINE MIR 107 160 -102 186 356 20 20 chr11 58817738 58817839 -89965633 + L2 LINE L2 3168 3268 -4 294 270 135 16 chr11 58817936 58818062 -89965410 + MIR SINE MIR 108 248 -14 194 307 13 27 chr11 58818136 58818211 -89965261 - MIR3 SINE MIR -16 192 119 251 313 0 0 chr11 58818288 58818352 -89965120 - MIR SINE MIR -111 97 34 21 0 0 0 chr11 58819094 58819115 -89964357 + AT_rich Low_complexity Low_complexity 1 21 0 268 344 62 8 chr11 58819195 58819323 -89964149 - MIR SINE MIR -115 147 13 1906 135 0 0 chr11 58820243 58820557 -89962915 - AluSx SINE Alu 0 314 1 183 100 0 0 chr11 58820662 58820692 -89962780 + (CA)n Simple_repeat Simple_repeat 2 31 0 380 20 0 20 chr11 58821154 58821204 -89962268 + (TAA)n Simple_repeat Simple_repeat 1 49 0 429 282 136 29 chr11 58821216 58821422 -89962050 - MIR SINE MIR -32 230 3 852 259 35 5 chr11 58821596 58821793 -89961679 + MIR SINE MIR 50 252 -10 455 267 74 51 chr11 58821918 58822045 -89961427 - L1M4 LINE L1 -3083 3063 2940 2284 80 3 3 chr11 58822045 58822346 -89961126 - AluSp SINE Alu -12 301 1 455 267 74 51 chr11 58822346 58822611 -89960861 - L1M4 LINE L1 -3206 2940 2662 252 320 100 10 chr11 58822755 58822855 -89960617 - MIR SINE MIR -126 136 28 183 271 21 0 chr11 58822947 58822995 -89960477 - L2 LINE L2 0 3313 3265 201 294 0 0 chr11 58823327 58823378 -89960094 + C-rich Low_complexity Low_complexity 5 55 0 467 326 68 55 chr11 58823569 58823805 -89959667 - MIR SINE MIR -9 253 15 1585 205 12 9 chr11 58823919 58824256 -89959216 + L1MD3 LINE L1 7658 7995 0 184 295 171 38 chr11 58825126 58825231 -89958241 - L2 LINE L2 -13 3259 3141 208 323 161 16 chr11 58825237 58825361 -89958111 + MIR SINE MIR 8 149 -113 336 294 63 35 chr11 58825361 58825504 -89957968 + MIR SINE MIR 116 262 0 211 224 20 0 chr11 58826167 58826216 -89957256 + L2 LINE L2 3263 3312 -1 237 239 34 102 chr11 58826818 58826906 -89956566 + MIR SINE MIR 108 189 -73 457 246 52 75 chr11 58827136 58827270 -89956202 + L2 LINE L2 3137 3267 -5 235 247 99 37 chr11 58827588 58827669 -89955803 - MIR SINE MIR -60 202 117 385 321 162 17 chr11 58827722 58828024 -89955448 - L3 LINE CR1 -1 1576 1231 186 310 84 0 chr11 58828265 58828336 -89955136 - MIR3 SINE MIR -26 182 106 235 208 65 100 chr11 58828479 58828604 -89954868 - MIR SINE MIR -29 179 75 292 264 54 60 chr11 58828820 58829019 -89954453 + MIR3 SINE MIR 5 200 -60 223 232 242 10 chr11 58829323 58829415 -89954057 - MIR SINE MIR -118 144 30 281 290 148 37 chr11 58829415 58829577 -89953895 - MER5A DNA MER1_type 0 189 10 258 293 13 0 chr11 58829599 58829674 -89953798 + L2 LINE L2 3197 3272 0 363 289 171 0 chr11 58829731 58829883 -89953589 - MIR SINE MIR -71 191 14 24 0 0 0 chr11 58830560 58830584 -89952888 + GC_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr11 58830601 58830623 -89952849 + GC_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr11 58830787 58830824 -89952648 + GC_rich Low_complexity Low_complexity 1 37 0 306 0 0 0 chr11 58832034 58832068 -89951404 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1708 138 3 7 chr11 58832071 58832353 -89951119 - AluJb SINE Alu -31 281 1 1068 201 58 108 chr11 58832547 58832746 -89950726 - LTR37A LTR ERV1 0 426 257 1942 128 0 7 chr11 58832746 58833035 -89950437 + AluSx SINE Alu 1 287 -25 1068 201 58 108 chr11 58833035 58833252 -89950220 - LTR37A LTR ERV1 -169 257 31 180 278 0 19 chr11 58833320 58833374 -89950098 - L3 LINE CR1 -151 1426 1374 1358 58 6 0 chr11 58833377 58833550 -89949922 + L1PA4 LINE L1 5980 6153 -2 1108 154 9 23 chr11 58833558 58833609 -89949863 + AluJo SINE Alu 86 136 -176 1794 88 27 109 chr11 58833609 58833940 -89949532 + AluYb8 SINE Alu 1 304 -14 1108 154 9 23 chr11 58833940 58834102 -89949370 + AluJo SINE Alu 136 296 -16 333 281 28 44 chr11 58834299 58834455 -89949017 - MIR SINE MIR -62 146 27 * 663 267 20 0 chr11 58834432 58834582 -89948890 + MIR SINE MIR 13 165 -97 1937 135 0 0 chr11 58834582 58834870 -89948602 + AluSx SINE Alu 1 288 -24 290 130 37 0 chr11 58834886 58834940 -89948532 + MIR SINE MIR 146 201 -61 1991 121 3 7 chr11 58835374 58835672 -89947800 + AluSx SINE Alu 4 300 -12 2110 107 3 0 chr11 58835941 58836239 -89947233 - AluSx SINE Alu -13 299 1 684 193 0 9 chr11 58836729 58836887 -89946585 - FLAM_C SINE Alu 0 165 9 1248 209 4 11 chr11 58837100 58837368 -89946104 + AluJo SINE Alu 30 295 -17 357 343 30 10 chr11 58838632 58838824 -89944648 - MIR SINE MIR -54 208 11 1464 98 10 5 chr11 58838941 58839144 -89944328 + AluSp SINE Alu 92 295 -18 189 107 0 0 chr11 58840532 58840560 -89942912 + (CA)n Simple_repeat Simple_repeat 1 28 0 2635 98 31 5 chr11 58840574 58840962 -89942510 - MER48 LTR ERV1 0 398 1 209 152 0 0 chr11 58841012 58841045 -89942427 + L2 LINE L2 3273 3305 -8 1736 162 0 14 chr11 58841082 58841372 -89942100 + AluJb SINE Alu 1 286 -26 21 0 0 0 chr11 58843459 58843480 -89939992 + AT_rich Low_complexity Low_complexity 1 21 0 226 32 0 0 chr11 58844751 58844782 -89938690 - L1P2 LINE L1 -520 5635 5605 3603 36 0 9 chr11 58844782 58845225 -89938247 + L1PA5 LINE L1 5713 6151 -3 427 331 92 12 chr11 58845238 58845576 -89937896 + L1M4 LINE L1 4480 4844 -1302 1057 145 0 29 chr11 58845979 58846151 -89937321 - FRAM SINE Alu -15 161 1 773 149 0 8 chr11 58846184 58846318 -89937154 - L1PB1 LINE L1 -60 6807 6675 2070 110 0 7 chr11 58846437 58846728 -89936744 - AluY SINE Alu -22 289 1 13965 196 16 8 chr11 58846728 58851913 -89931559 - L1PB1 LINE L1 -178 6689 1395 528 233 67 16 chr11 58851893 58852086 -89931386 - L1PB1 LINE L1 -6647 216 14 * 676 176 38 0 chr11 58852086 58852245 -89931227 - L1MA7 LINE L1 -1 6290 6126 824 153 37 42 chr11 58852245 58852435 -89931037 + L1MA8 LINE L1 6028 6216 -75 508 57 0 91 chr11 58852437 58852525 -89930947 - MADE1 DNA Mariner 0 80 1 271 176 44 0 chr11 58852568 58852636 -89930836 + L1MA8 LINE L1 6221 6291 0 258 54 0 0 chr11 58852648 58852685 -89930787 - L1MA8 LINE L1 -164 6127 6091 1211 133 8 30 chr11 58852703 58852937 -89930535 - L1MA8 LINE L1 -169 6122 5894 1482 131 74 48 chr11 58852940 58853277 -89930195 - L1MA7 LINE L1 0 6291 5946 513 324 101 65 chr11 58854339 58854756 -89928716 - L2 LINE L2 -4 3268 2837 2045 126 3 13 chr11 58854831 58855133 -89928339 - AluSx SINE Alu -12 300 2 807 284 56 79 chr11 58855366 58855426 -89928046 + L2 LINE L2 2289 2349 -965 2229 93 3 7 chr11 58855426 58855716 -89927756 + AluSc SINE Alu 1 289 -20 807 284 56 79 chr11 58855716 58856005 -89927467 + L2 LINE L2 2349 2643 -671 1757 202 33 72 chr11 58856005 58856491 -89926981 - MLT1C LTR MaLR 0 467 1 807 284 56 79 chr11 58856491 58856766 -89926706 + L2 LINE L2 2643 2972 -342 853 137 0 0 chr11 58856774 58856905 -89926567 - THE1B LTR MaLR 0 364 234 2504 37 0 10 chr11 58856913 58857209 -89926263 - AluY SINE Alu -12 299 7 195 235 0 0 chr11 58857309 58857360 -89926112 + T-rich Low_complexity Low_complexity 1 51 0 427 102 21 75 chr11 58857389 58857576 -89925896 + (TTCTC)n Simple_repeat Simple_repeat 2 178 0 345 183 110 0 chr11 58857581 58857663 -89925809 - AluJo SINE Alu -4 298 208 634 171 60 0 chr11 58857676 58857793 -89925679 - AluJo SINE Alu -188 124 1 3984 170 28 39 chr11 58858587 58859139 -89924333 - L1MD1 LINE L1 -11 6231 5691 2269 99 0 0 chr11 58859139 58859431 -89924041 - AluSg SINE Alu -18 292 1 3984 170 28 39 chr11 58859431 58859774 -89923698 - L1MD1 LINE L1 -551 5691 5346 1052 44 0 0 chr11 58860815 58860950 -89922522 - L1PA4 LINE L1 -170 5985 5851 1397 24 24 0 chr11 58860950 58861119 -89922353 + L1PA4 LINE L1 5981 6153 -2 401 232 65 54 chr11 58861884 58862052 -89921420 - LTR16A LTR ERVL -263 187 18 193 255 20 0 chr11 58862686 58862737 -89920735 - L2 LINE L2 -6 3266 3215 2385 79 0 32 chr11 58863214 58863530 -89919942 + AluY SINE Alu 1 306 -5 516 286 88 51 chr11 58863663 58863713 -89919759 + L2 LINE L2 2930 2977 -336 2207 140 14 16 chr11 58863713 58863854 -89919618 - THE1B LTR MaLR 0 364 224 2552 36 0 10 chr11 58863854 58864156 -89919316 - AluY SINE Alu -12 299 1 2207 140 14 16 chr11 58864156 58864379 -89919093 - THE1B LTR MaLR -140 224 1 11620 93 9 11 chr11 58864379 58865962 -89917510 - THE1B-int LTR MaLR 0 1580 1 2150 126 57 17 chr11 58865962 58866312 -89917160 - THE1B LTR MaLR 0 364 1 516 286 88 51 chr11 58866312 58866532 -89916940 + L2 LINE L2 2976 3212 -101 1024 225 55 52 chr11 58866706 58867071 -89916401 + HsTC2 DNA Tc2 1233 1774 -124 227 163 0 0 chr11 58869167 58869216 -89914256 - L1M4 LINE L1 -2235 3911 3863 1899 133 174 8 chr11 58869367 58869734 -89913738 - MSTA LTR MaLR 0 428 1 513 368 50 13 chr11 58870059 58870377 -89913095 - ERVL LTR ERVL -1413 4351 4022 * 1318 288 39 3 chr11 58870368 58870757 -89912715 - ERVL LTR ERVL -2023 2973 2571 206 167 21 21 chr11 58871071 58871119 -89912353 + GA-rich Low_complexity Low_complexity 2 49 0 984 226 77 79 chr11 58871133 58871536 -89911936 + L2 LINE L2 1743 2144 -1170 3162 127 49 4 chr11 58871684 58872173 -89911299 + MER9 LTR ERVK 1 511 0 28302 67 19 14 chr11 58872173 58872926 -89910546 + HERVK9 LTR ERVK 1 749 -5167 186 228 0 88 chr11 58872926 58872983 -89910489 + MER5B DNA MER1_type 58 109 -69 28302 67 19 14 chr11 58872983 58876095 -89907377 + HERVK9 LTR ERVK 749 3941 -1975 3393 94 5 4 chr11 58876127 58876999 -89906473 + HERVK9 LTR ERVK 4745 5634 -282 2080 111 4 17 chr11 58877040 58877381 -89906091 + HERVK9 LTR ERVK 4922 5916 0 3187 129 47 4 chr11 58877381 58877871 -89905601 + MER9 LTR ERVK 1 511 0 2384 94 0 0 chr11 58879022 58879320 -89904152 + AluY SINE Alu 3 300 -11 2911 190 133 48 chr11 58879705 58880608 -89902864 - MER52C LTR ERV1 0 1278 16 258 214 71 7 chr11 58881163 58881317 -89902155 + (TA)n Simple_repeat Simple_repeat 1 164 0 304 180 20 60 chr11 58881371 58881471 -89902001 + (TATATG)n Simple_repeat Simple_repeat 3 98 0 256 294 72 19 chr11 58881482 58881744 -89901728 - L1ME LINE L1 -299 5822 5547 26 0 0 0 chr11 58881852 58881878 -89901594 + AT_rich Low_complexity Low_complexity 1 26 0 905 164 12 0 chr11 58882043 58882208 -89901264 - L1MD2 LINE L1 0 6359 6193 2005 186 28 12 chr11 58882208 58882639 -89900833 - L1MD1 LINE L1 -165 6077 5640 1782 228 48 24 chr11 58882847 58883352 -89900120 + MER119 DNA MER1_type 15 531 -52 21 0 0 0 chr11 58883925 58883946 -89899526 + AT_rich Low_complexity Low_complexity 1 21 0 268 243 9 19 chr11 58884047 58884154 -89899318 + L1M4 LINE L1 5176 5281 -865 302 297 76 35 chr11 58884185 58884330 -89899142 + L1MC4 LINE L1 7436 7586 -456 309 235 35 0 chr11 58884340 58884425 -89899047 + L1M LINE L1 5282 5369 -797 850 138 0 0 chr11 58884428 58884544 -89898928 + AluSq/x SINE Alu 3 118 -194 28 48 0 0 chr11 58884865 58884907 -89898565 + AT_rich Low_complexity Low_complexity 1 42 0 1964 152 3 0 chr11 58884955 58885265 -89898207 + AluSq SINE Alu 1 311 -2 330 289 248 0 chr11 58885718 58885867 -89897605 + MER5A DNA MER1_type 1 186 -3 777 226 50 6 chr11 58885926 58886107 -89897365 + MER5A DNA MER1_type 1 189 0 1986 149 7 3 chr11 58887247 58887660 -89895812 - AluSx SINE Alu 0 420 7 397 140 28 50 chr11 58887748 58887927 -89895545 + CT-rich Low_complexity Low_complexity 4 178 0 1042 128 124 77 chr11 58888176 58888448 -89895024 - MSTA LTR MaLR -27 401 117 1933 149 30 0 chr11 58888448 58888776 -89894696 + MER1B DNA MER1_type 2 339 0 758 135 8 8 chr11 58888776 58888901 -89894571 - MSTA LTR MaLR -303 125 1 21 0 0 0 chr11 58889232 58889253 -89894219 + AT_rich Low_complexity Low_complexity 1 21 0 318 87 0 59 chr11 58889275 58889314 -89894158 + L1MA1 LINE L1 6214 6250 -50 503 30 0 15 chr11 58889314 58889380 -89894092 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 318 87 0 59 chr11 58889380 58889396 -89894076 + L1MA1 LINE L1 6250 6265 -35 23 33 0 0 chr11 58889398 58889428 -89894044 + AT_rich Low_complexity Low_complexity 1 30 0 273 277 138 0 chr11 58889587 58889681 -89893791 - MIR SINE MIR 0 262 156 459 266 8 0 chr11 58889681 58889805 -89893667 - FLAM_A SINE Alu 0 142 18 459 263 75 25 chr11 58889809 58889969 -89893503 - MIR SINE MIR -93 169 2 437 350 29 8 chr11 58891615 58891858 -89891614 - L2 LINE L2 -100 3213 2966 292 15 3 0 chr11 58891858 58891903 -89891569 + L1PA3 LINE L1 6106 6152 -3 2114 309 121 24 chr11 58891921 58892254 -89891218 - L2 LINE L2 -360 2954 2655 637 250 83 10 chr11 58892254 58892458 -89891014 + MER20 DNA MER1_type 1 219 0 2114 309 121 24 chr11 58892458 58893252 -89890220 - L2 LINE L2 -659 2655 1718 357 140 11 15 chr11 58894113 58894180 -89889292 - AluSc SINE Alu -3 296 238 198 0 0 0 chr11 58894180 58894202 -89889270 + (T)n Simple_repeat Simple_repeat 1 22 0 271 318 34 0 chr11 58894412 58894500 -89888972 - MIR SINE MIR -141 121 31 426 319 110 11 chr11 58894695 58894886 -89888586 + MIR SINE MIR 13 222 -40 28 0 0 0 chr11 58895342 58895370 -89888102 + AT_rich Low_complexity Low_complexity 1 28 0 219 36 0 0 chr11 58895476 58895504 -89887968 + (A)n Simple_repeat Simple_repeat 1 28 0 3050 118 40 0 chr11 58896366 58896841 -89886631 - L1PA13 LINE L1 -13 6150 5657 290 238 218 20 chr11 58897235 58897336 -89886136 - MIR SINE MIR -112 150 30 228 333 111 0 chr11 58897369 58897450 -89886022 - MIR SINE MIR -171 91 2 604 314 85 28 chr11 58897478 58897726 -89885746 + MIR SINE MIR 1 262 0 2207 155 54 33 chr11 58898328 58898753 -89884719 + Tigger2a DNA MER2_type 1 434 0 22 35 0 0 chr11 58898988 58899017 -89884455 + AT_rich Low_complexity Low_complexity 1 29 0 29 28 0 0 chr11 58899724 58899760 -89883712 + AT_rich Low_complexity Low_complexity 1 36 0 1706 163 0 27 chr11 58899760 58900060 -89883412 - AluSx SINE Alu -20 292 1 1453 199 13 10 chr11 58900323 58900714 -89882758 - L1M1 LINE L1 -762 5384 5061 2141 90 0 0 chr11 58900714 58900987 -89882485 + L1PB1 LINE L1 5864 6151 0 360 0 0 0 chr11 58901029 58901069 -89882403 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 3373 293 128 30 chr11 58901673 58902031 -89881441 + L2 LINE L2 1263 1585 -1728 1491 174 0 52 chr11 58902031 58902318 -89881154 - AluJb SINE Alu -36 276 5 3373 293 128 30 chr11 58902318 58902363 -89881109 + L2 LINE L2 1585 1624 -1689 243 0 0 0 chr11 58902363 58902390 -89881082 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 3373 293 128 30 chr11 58902390 58903859 -89879613 + L2 LINE L2 1624 3309 -4 2412 60 0 10 chr11 58904179 58904479 -89878993 - AluY SINE Alu -10 301 5 623 296 41 0 chr11 58904488 58904660 -89878812 + MIR SINE MIR 53 231 -31 2365 58 13 19 chr11 58904736 58905045 -89878427 + AluSq SINE Alu 3 309 -4 300 48 0 0 chr11 58905333 58905375 -89878097 + L1PA2 LINE L1 6111 6152 -3 252 207 98 49 chr11 58905378 58905460 -89878012 - MIR SINE MIR -96 166 81 2186 124 0 0 chr11 58906542 58906841 -89876631 - AluSc SINE Alu -10 299 1 31 76 0 0 chr11 58907007 58907073 -89876399 + AT_rich Low_complexity Low_complexity 1 66 0 36 40 0 0 chr11 58907705 58907755 -89875717 + AT_rich Low_complexity Low_complexity 1 50 0 201 227 23 0 chr11 58909909 58909953 -89873519 + (TA)n Simple_repeat Simple_repeat 2 46 0 931 171 103 103 chr11 58910557 58910896 -89872576 + MER44D DNA MER2_type 1 609 0 225 0 0 0 chr11 58912021 58912046 -89871426 + (T)n Simple_repeat Simple_repeat 1 25 0 2173 113 13 13 chr11 58912316 58912625 -89870847 - AluSq SINE Alu -4 309 1 1021 104 8 0 chr11 58912625 58912759 -89870713 - AluSq/x SINE Alu -177 135 1 1671 237 91 2 chr11 58913352 58913757 -89869715 - MLT2B1 LTR ERVL -79 441 1 850 176 31 5 chr11 58914154 58914347 -89869125 + L1M4 LINE L1 4122 4319 -1827 692 191 8 8 chr11 58914468 58914599 -89868873 + FLAM_C SINE Alu 1 131 -12 21 82 0 0 chr11 58914993 58915042 -89868430 + AT_rich Low_complexity Low_complexity 1 49 0 1104 269 117 64 chr11 58915182 58915508 -89867964 + L1M4 LINE L1 3497 3804 -2342 1815 177 3 7 chr11 58915508 58915802 -89867670 - AluJb SINE Alu -19 293 1 1104 269 117 64 chr11 58915802 58917028 -89866444 + L1M4 LINE L1 3804 5132 -1014 1941 112 3 41 chr11 58917259 58917587 -89865885 - AluSx SINE Alu 0 317 1 888 334 113 26 chr11 58919304 58919953 -89863519 + L2 LINE L2 1717 2421 -893 2829 199 59 22 chr11 58919954 58920632 -89862840 - MER67C LTR ERV1 0 710 8 1224 331 77 10 chr11 58920632 58921398 -89862074 + L2 LINE L2 2418 3237 -76 588 240 94 0 chr11 58921868 58922039 -89861433 - MER5A DNA MER1_type -2 187 1 3260 32 10 0 chr11 58922246 58922646 -89860826 - L1P LINE L1 -1607 4539 4136 279 356 89 0 chr11 58923447 58923593 -89859879 - MIR SINE MIR -73 189 31 365 287 81 7 chr11 58924487 58924623 -89858849 - MIR SINE MIR -65 197 52 214 241 40 0 chr11 58924812 58924920 -89858552 + L2 LINE L2 3235 3312 -1 310 260 37 130 chr11 58925011 58925257 -89858215 + MLT1K LTR MaLR 291 513 -75 447 299 113 17 chr11 58925762 58925887 -89857585 + MER58A DNA MER1_type 3 151 -2269 13631 139 45 9 chr11 58925887 58928223 -89855249 - Tigger1 DNA MER2_type 0 2418 1 447 299 113 17 chr11 58928223 58928274 -89855198 + MER58A DNA MER1_type 151 196 -28 193 273 133 47 chr11 58928280 58928430 -89855042 - MIR SINE MIR -87 175 13 28 29 0 0 chr11 58928560 58928595 -89854877 + AT_rich Low_complexity Low_complexity 1 35 0 6308 137 26 16 chr11 58929042 58931003 -89852469 - L1MA2 LINE L1 -1 6303 4318 8603 163 10 9 chr11 58931023 58933666 -89849806 - L1PB1 LINE L1 0 7570 4929 3859 203 14 14 chr11 58933662 58934395 -89849077 - L1PB1 LINE L1 -6499 1066 334 * 28 29 0 0 chr11 58936817 58936852 -89846620 + AT_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr11 58939209 58939230 -89844242 + (TG)n Simple_repeat Simple_repeat 2 22 0 1356 213 176 68 chr11 58939999 58940562 -89842910 - MLT1E3 LTR MaLR 0 624 1 2522 179 56 15 chr11 58940624 58941159 -89842313 + MER68 LTR ERV1 1 557 -5 328 253 193 55 chr11 58941878 58942080 -89841392 - MIR SINE MIR -31 231 2 31 82 0 0 chr11 58942381 58942454 -89841018 + AT_rich Low_complexity Low_complexity 1 73 0 31 76 0 0 chr11 58942602 58942668 -89840804 + AT_rich Low_complexity Low_complexity 1 66 0 4104 149 50 4 chr11 58942715 58943509 -89839963 + L1MA7 LINE L1 5275 6105 -186 2807 244 70 10 chr11 58943532 58944418 -89839054 + L1PBa LINE L1 6 944 -5919 237 114 0 0 chr11 58944417 58944452 -89839020 + L1PB1 LINE L1 6050 6084 -67 * 855 149 54 0 chr11 58944486 58944654 -89838818 + L1MA7 LINE L1 6106 6282 -9 26 30 0 0 chr11 58944866 58944899 -89838573 + AT_rich Low_complexity Low_complexity 1 33 0 725 151 7 40 chr11 58944995 58945147 -89838325 + L1MA5 LINE L1 6154 6300 0 4628 120 61 6 chr11 58945156 58945995 -89837477 + Tigger3b DNA MER2_type 65 949 -282 25743 113 20 15 chr11 58945999 58951260 -89832212 - L1PA8 LINE L1 -13 6159 878 281 172 0 35 chr11 58951296 58951354 -89832118 - FLAM_A SINE Alu -1 132 77 1599 114 67 0 chr11 58951354 58951609 -89831863 + Tigger3b DNA MER2_type 956 1227 -4 311 306 70 20 chr11 58952143 58952342 -89831130 + L1M4 LINE L1 3669 3877 -2269 7001 41 1 41 chr11 58952413 58954011 -89829461 + L1PA4 LINE L1 4584 6149 -6 249 255 62 0 chr11 58954096 58954241 -89829231 + L1M4 LINE L1 4385 4538 -1608 5994 146 25 12 chr11 58954285 58955352 -89828120 - L1MC1 LINE L1 0 6333 5256 2138 157 86 9 chr11 58955352 58955772 -89827700 + LTR47A LTR ERVL 1 452 0 5994 146 25 12 chr11 58955772 58955844 -89827628 - L1MC1 LINE L1 -1077 5256 5186 328 237 191 13 chr11 58955854 58956000 -89827472 + L1M4 LINE L1 4613 4786 -1355 192 77 0 0 chr11 58956000 58956026 -89827446 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 21 0 0 0 chr11 58956101 58956122 -89827350 + AT_rich Low_complexity Low_complexity 1 21 0 313 340 0 0 chr11 58956162 58956259 -89827213 + L1M4 LINE L1 4972 5068 -1078 1649 254 39 11 chr11 58956477 58956945 -89826527 - MLT2B1 LTR ERVL -39 481 1 426 286 72 1 chr11 58956947 58957167 -89826305 + L1M4 LINE L1 5209 5442 -732 21 0 0 0 chr11 58957359 58957380 -89826092 + AT_rich Low_complexity Low_complexity 1 21 0 299 329 175 0 chr11 58957424 58957561 -89825911 - MER5A DNA MER1_type -1 188 28 255 237 28 48 chr11 58958284 58958367 -89825105 + MIR SINE MIR 32 114 -102 709 224 102 10 chr11 58958632 58958828 -89824644 + MER20 DNA MER1_type 4 217 -2 2311 97 0 19 chr11 58959289 58959597 -89823875 + AluSx SINE Alu 1 302 -10 1002 142 0 0 chr11 58959606 58959747 -89823725 + AluJb SINE Alu 21 161 -151 4326 100 310 88 chr11 58959747 58961132 -89822340 - pTR5 LTR ERV1 -2 2436 745 964 140 0 14 chr11 58961132 58961275 -89822197 + AluSg/x SINE Alu 151 291 -21 431 295 0 0 chr11 58961576 58961671 -89821801 - MER5A DNA MER1_type -85 104 10 2278 117 0 7 chr11 58962053 58962362 -89821110 + AluSx SINE Alu 1 307 -5 434 271 39 13 chr11 58963375 58963530 -89819942 - MIR SINE MIR -5 257 99 598 204 136 9 chr11 58963579 58963799 -89819673 + MER33 DNA MER1_type 15 262 -62 2117 118 3 3 chr11 58963800 58964089 -89819383 - AluSx SINE Alu -23 289 1 2030 137 7 0 chr11 58964613 58964897 -89818575 + AluSq SINE Alu 1 286 -27 1174 250 173 6 chr11 58965849 58966853 -89816619 - L1ME2 LINE L1 -219 5945 4781 445 204 99 13 chr11 58967059 58967211 -89816261 - MER3 DNA MER1_type -4 205 41 751 223 38 0 chr11 58967351 58967508 -89815964 - L1PA16 LINE L1 -9 6157 5995 225 0 0 0 chr11 58968011 58968036 -89815436 + (A)n Simple_repeat Simple_repeat 1 25 0 1964 125 8 0 chr11 58968040 58968304 -89815168 + AluSx SINE Alu 28 293 -19 2255 114 0 0 chr11 58968740 58969039 -89814433 - AluSx SINE Alu -12 300 2 295 292 42 0 chr11 58972147 58972243 -89811229 - MER70B LTR ERVL -22 556 457 2080 105 14 3 chr11 58973437 58973722 -89809750 - AluSx SINE Alu -9 303 16 4175 106 48 3 chr11 58973811 58974473 -89808999 + L1PA15 LINE L1 5466 6157 -8 295 335 77 14 chr11 58974906 58975115 -89808357 - L2 LINE L2 -707 2607 2386 2044 128 32 0 chr11 58976166 58976448 -89807024 + AluJb SINE Alu 1 291 -21 651 292 40 36 chr11 58976652 58976926 -89806546 + L2 LINE L2 2049 2323 -991 694 144 75 0 chr11 58977120 58977266 -89806206 - L1MB2 LINE L1 -3 6168 6012 4193 98 41 0 chr11 58977313 58977947 -89805525 - L1MA1 LINE L1 0 6302 5643 4700 197 87 21 chr11 58977952 58979258 -89804214 - Charlie1a DNA MER1_type -8 1447 57 324 297 0 0 chr11 58979295 58979396 -89804076 + L1MC4 LINE L1 7802 7902 -140 2332 93 0 10 chr11 58982141 58982452 -89801020 + AluSx SINE Alu 1 308 -4 1177 77 0 39 chr11 58982468 58982714 -89800758 + AluY SINE Alu 1 301 -10 2330 79 16 0 chr11 58983474 58983779 -89799693 - AluY SINE Alu -1 310 1 215 305 38 53 chr11 58984796 58984927 -89798545 - MIR SINE MIR -121 141 13 465 73 146 0 chr11 58986258 58986340 -89797132 - L1MB3 LINE L1 -3 6180 6087 410 134 7 53 chr11 58986487 58986636 -89796836 + (TCTCTG)n Simple_repeat Simple_repeat 1 142 0 630 145 0 28 chr11 58986636 58986815 -89796657 + (TC)n Simple_repeat Simple_repeat 1 174 0 22 0 0 0 chr11 58988570 58988592 -89794880 + AT_rich Low_complexity Low_complexity 1 22 0 429 254 93 88 chr11 58988762 58988955 -89794517 - MIR SINE MIR -67 195 2 11951 18 3 3 chr11 58989239 58991519 -89791953 - L1HS LINE L1 0 6155 3873 7538 15 6 0 chr11 58991523 58992387 -89791085 + L1PA3 LINE L1 5284 6152 -3 271 234 39 13 chr11 58992738 58992803 -89790669 - MER5B DNA MER1_type 0 178 109 2105 132 7 10 chr11 58992803 58993106 -89790366 + AluSx SINE Alu 1 302 -10 271 234 39 13 chr11 58993106 58993117 -89790355 - MER5B DNA MER1_type -69 109 100 39 22 0 0 chr11 58994005 58994051 -89789421 + AT_rich Low_complexity Low_complexity 1 46 0 3116 86 56 2 chr11 58994051 58994518 -89788954 + L1MA1 LINE L1 5806 6297 -5 2237 75 4 0 chr11 58994531 58994809 -89788663 + AluSc SINE Alu 1 279 -30 828 185 41 41 chr11 58994896 58995139 -89788333 + L1MA9 LINE L1 6046 6288 -24 297 280 93 0 chr11 58995243 58995350 -89788122 - MIR SINE MIR -49 213 97 2111 142 0 3 chr11 58996073 58996383 -89787089 + AluSx SINE Alu 1 309 -3 607 298 6 0 chr11 58996521 58996682 -89786790 + MIR SINE MIR 88 249 -13 194 244 0 0 chr11 58996702 58996747 -89786725 + MIR SINE MIR 74 118 -144 764 235 36 49 chr11 58997645 58997892 -89785580 + MIR SINE MIR 7 250 -12 198 0 0 0 chr11 58997936 58997958 -89785514 + (TG)n Simple_repeat Simple_repeat 1 22 0 2038 129 0 0 chr11 58997963 58998242 -89785230 - AluY SINE Alu -30 281 3 239 277 31 0 chr11 58998523 58998588 -89784884 - L2 LINE L2 -20 3252 3186 2180 109 7 0 chr11 58998766 58999049 -89784423 + AluSx SINE Alu 1 285 -27 1174 254 181 11 chr11 59000001 59001005 -89782467 - L1ME2 LINE L1 -219 5945 4781 445 204 99 13 chr11 59001211 59001363 -89782109 - MER3 DNA MER1_type -4 205 41 751 223 38 0 chr11 59001503 59001660 -89781812 - L1PA16 LINE L1 -9 6157 5995 2391 27 3 40 chr11 59001989 59002286 -89781186 - AluY SINE Alu -25 286 1 1716 100 0 0 chr11 59002438 59002678 -89780794 - L1PA6 LINE L1 0 6154 5915 202 351 121 0 chr11 59003675 59003849 -89779623 + MIR SINE MIR 68 262 0 734 298 28 5 chr11 59004634 59004852 -89778620 + MIR SINE MIR 1 223 -39 24 32 0 0 chr11 59005233 59005264 -89778208 + AT_rich Low_complexity Low_complexity 1 31 0 3213 89 19 8 chr11 59005276 59005758 -89777714 - LTR15 LTR ERV1 -6 487 1 536 391 62 26 chr11 59005758 59006180 -89777292 - L2 LINE L2 -8 3264 2828 28 0 0 0 chr11 59006222 59006250 -89777222 + AT_rich Low_complexity Low_complexity 1 28 0 7314 65 6 11 chr11 59006250 59007722 -89775750 - SVA Other Other -876 1386 1 2366 110 0 0 chr11 59007774 59008075 -89775397 + AluSx SINE Alu 3 303 -9 256 246 0 0 chr11 59008162 59008223 -89775249 - MER63 DNA MER1_type -314 748 688 2708 252 80 40 chr11 59008224 59009429 -89774043 - L1MD3 LINE L1 -795 7200 5948 4077 174 22 5 chr11 59009841 59010960 -89772512 + L1MA9 LINE L1 4910 6051 -261 1953 133 0 0 chr11 59011462 59011777 -89771695 + AluSg SINE Alu 1 315 0 269 108 0 0 chr11 59012243 59012292 -89771180 + L1M1 LINE L1 5688 5736 -432 420 180 13 100 chr11 59012914 59013064 -89770408 + MER31-int LTR ERV1 1531 1667 -3269 273 333 6 36 chr11 59013010 59013175 -89770297 + LTR57-int LTR ERVL 1351 1510 -3833 * 252 227 246 9 chr11 59014027 59014137 -89769335 + L2 LINE L2 3162 3297 -16 2531 99 33 0 chr11 59014334 59014697 -89768775 + THE1C LTR MaLR 1 375 0 540 194 39 0 chr11 59014708 59014837 -89768635 + L1MA9 LINE L1 6174 6307 -5 5017 174 44 31 chr11 59015077 59017146 -89766326 - L1MB1 LINE L1 0 5992 3882 2166 263 71 28 chr11 59017150 59017730 -89765742 - L1MB1 LINE L1 -4548 1343 1157 2357 91 0 16 chr11 59017730 59018039 -89765433 - AluY SINE Alu -7 304 1 2166 263 71 28 chr11 59018039 59018990 -89764482 - L1MB1 LINE L1 -4734 1157 249 * 2663 69 22 9 chr11 59018978 59019567 -89763905 - L1P3 LINE L1 -577 5595 4998 2318 84 16 0 chr11 59020303 59020611 -89762861 + AluSp SINE Alu 1 313 0 26 0 0 0 chr11 59020814 59020840 -89762632 + GC_rich Low_complexity Low_complexity 1 26 0 243 0 0 0 chr11 59020840 59020867 -89762605 + (T)n Simple_repeat Simple_repeat 1 27 0 363 212 82 113 chr11 59021175 59021293 -89762179 - L1MC4 LINE L1 -674 7368 7248 3147 158 21 7 chr11 59021293 59021864 -89761608 + L1PB3 LINE L1 5576 6154 0 363 212 82 113 chr11 59021864 59022037 -89761435 - L1MC4 LINE L1 -794 7248 7086 1697 165 12 39 chr11 59022962 59023317 -89760155 - MER7A DNA MER2_type -1 345 1 838 225 0 32 chr11 59023322 59023509 -89759963 - MER58A DNA MER1_type -43 181 1 483 48 0 0 chr11 59023696 59023758 -89759714 + (TCTA)n Simple_repeat Simple_repeat 1 62 0 1667 164 10 48 chr11 59024696 59025006 -89758466 - AluJb SINE Alu -14 298 1 21 36 0 0 chr11 59025014 59025042 -89758430 + AT_rich Low_complexity Low_complexity 1 28 0 214 223 272 68 chr11 59025093 59025196 -89758276 + MER5C DNA MER1_type 1 124 -200 196 253 114 0 chr11 59025264 59025343 -89758129 + MER5C DNA MER1_type 191 278 -46 2983 142 4 0 chr11 59025637 59026116 -89757356 - L1PB1 LINE L1 -3 6148 5668 1242 181 19 30 chr11 59027267 59027692 -89755780 + L1MB5 LINE L1 5139 5559 -615 492 176 0 0 chr11 59027710 59027795 -89755677 + L1PA12 LINE L1 6 90 -7491 6142 74 35 9 chr11 59027795 59028119 -89755353 + L1PA13 LINE L1 5006 5320 -843 2022 116 4 0 chr11 59028119 59028395 -89755077 + AluSx SINE Alu 30 306 -6 6142 74 35 9 chr11 59028395 59029196 -89754276 + L1PA13 LINE L1 5320 6158 -5 2220 128 0 0 chr11 59029205 59029517 -89753955 + AluSx SINE Alu 1 312 0 850 180 42 27 chr11 59029523 59029578 -89753894 + L1MB5 LINE L1 5544 5597 -577 2452 221 16 2 chr11 59029578 59030089 -89753383 + LTR53 LTR ERVL 1 518 -1 850 180 42 27 chr11 59030089 59030286 -89753186 + L1MB5 LINE L1 5597 5843 -331 5169 159 4 23 chr11 59030288 59030485 -89752987 + MER49 LTR ERV1 1 200 -723 2254 101 3 16 chr11 59030485 59030791 -89752681 + AluSx SINE Alu 1 302 -10 5169 159 4 23 chr11 59030791 59031524 -89751948 + MER49 LTR ERV1 200 914 -9 1059 189 30 9 chr11 59031534 59031767 -89751705 + L1MB5 LINE L1 5909 6146 -28 320 69 0 0 chr11 59032883 59032933 -89750539 + MADE1 DNA Mariner 39 80 0 21 0 0 0 chr11 59033223 59033244 -89750228 + AT_rich Low_complexity Low_complexity 1 21 0 238 292 236 21 chr11 59033615 59033759 -89749713 + MIR SINE MIR 18 192 -70 251 261 31 0 chr11 59034254 59034319 -89749153 - L2 LINE L2 -20 3252 3186 2301 90 10 0 chr11 59034497 59034807 -89748665 + AluSp SINE Alu 1 313 0 2104 114 37 7 chr11 59034840 59035139 -89748333 + AluSx SINE Alu 1 308 -4 306 317 157 15 chr11 59035168 59035436 -89748036 + L2 LINE L2 3008 3313 0 23 33 0 0 chr11 59038484 59038514 -89744958 + AT_rich Low_complexity Low_complexity 1 30 0 208 321 67 30 chr11 59038590 59038724 -89744748 - MIR SINE MIR -113 149 11 2153 147 3 0 chr11 59038787 59039099 -89744373 + AluSq SINE Alu 1 313 0 465 283 58 47 chr11 59039277 59039620 -89743852 - L1ME1 LINE L1 -3 6163 5817 347 321 168 0 chr11 59040077 59040214 -89743258 + MER5A DNA MER1_type 9 168 -21 2192 123 0 3 chr11 59040214 59040515 -89742957 - AluSx SINE Alu -12 300 1 477 34 0 0 chr11 59041716 59041775 -89741697 + (TG)n Simple_repeat Simple_repeat 2 60 0 991 141 20 196 chr11 59042598 59042939 -89740533 + AluYb8 SINE Alu 1 281 -37 1833 139 0 14 chr11 59042939 59043220 -89740252 + AluSx SINE Alu 29 305 -7 2353 89 0 16 chr11 59044533 59044848 -89738624 + AluSg SINE Alu 1 310 0 413 293 43 14 chr11 59046714 59046854 -89736618 + MIR3 SINE MIR 58 201 -7 2526 52 0 3 chr11 59046979 59047288 -89736184 + AluY SINE Alu 2 309 -2 1884 78 70 0 chr11 59047401 59047658 -89735814 + AluY SINE Alu 37 311 0 216 0 0 0 chr11 59048857 59048881 -89734591 + (T)n Simple_repeat Simple_repeat 1 24 0 368 138 0 0 chr11 59049253 59049311 -89734161 + AluSg SINE Alu 1 58 -242 1753 205 61 29 chr11 59049311 59049754 -89733718 - LTR2B LTR ERV1 0 490 34 36235 72 16 12 chr11 59049775 59054848 -89728624 - Harlequin LTR ERV1 0 6896 1807 7540 84 32 18 chr11 59054834 59055978 -89727494 - Harlequin LTR ERV1 -5474 1422 263 * 2197 133 38 10 chr11 59055973 59056449 -89727023 - Harlequin LTR ERV1 -6511 385 1 * 1677 201 98 26 chr11 59056449 59056906 -89726566 - LTR2B LTR ERV1 0 490 1 1735 111 0 44 chr11 59056906 59057158 -89726314 + AluSg SINE Alu 55 295 -15 438 330 47 31 chr11 59057161 59057419 -89726053 - MIR SINE MIR 0 262 1 359 115 0 16 chr11 59057802 59057863 -89725609 + MLT1B LTR MaLR 1 60 -330 370 187 0 0 chr11 59057963 59058038 -89725434 + Tigger7 DNA MER2_type 47 121 -584 2411 263 46 35 chr11 59058043 59058824 -89724648 - L1M4c LINE L1 -1560 4822 4026 837 193 94 75 chr11 59058824 59059155 -89724317 + MER44D DNA MER2_type 2 608 -1 2411 263 46 35 chr11 59059155 59059447 -89724025 - L1M4c LINE L1 -2356 4026 3738 231 36 0 0 chr11 59059447 59059475 -89723997 + (TTA)n Simple_repeat Simple_repeat 1 28 0 1976 279 71 23 chr11 59059506 59060704 -89722768 - L1M4c LINE L1 -3884 2679 1286 918 154 0 0 chr11 59060784 59060920 -89722552 - AluJb SINE Alu -176 136 1 230 0 0 32 chr11 59061257 59061288 -89722184 + (TTTTTA)n Simple_repeat Simple_repeat 2 31 0 7359 30 0 0 chr11 59061305 59062936 -89720536 - L1PA3 LINE L1 0 6155 4548 8979 26 5 0 chr11 59062936 59064047 -89719425 + L1P LINE L1 3475 4590 -1556 513 254 99 0 chr11 59064420 59064562 -89718910 - MLT1D LTR MaLR -22 632 477 1030 198 51 13 chr11 59064630 59064867 -89718605 + MSTB1 LTR MaLR 187 432 0 890 289 66 60 chr11 59064868 59065521 -89717951 - L1M4 LINE L1 -1738 4408 3752 698 231 75 107 chr11 59065600 59065973 -89717499 - MLT1D LTR MaLR -144 361 1 2968 212 33 18 chr11 59066659 59067441 -89716031 + L1MB1 LINE L1 5372 6165 -3 263 122 27 27 chr11 59067442 59067516 -89715956 + (TA)n Simple_repeat Simple_repeat 2 75 0 401 39 0 0 chr11 59069431 59069483 -89713989 + MADE1 DNA Mariner 29 80 0 27 87 0 0 chr11 59069980 59070049 -89713423 + AT_rich Low_complexity Low_complexity 1 69 0 25 31 0 0 chr11 59070862 59070894 -89712578 + AT_rich Low_complexity Low_complexity 1 32 0 198 103 0 0 chr11 59071286 59071315 -89712157 + (T)n Simple_repeat Simple_repeat 1 29 0 234 207 0 0 chr11 59071501 59071559 -89711913 + (TA)n Simple_repeat Simple_repeat 2 59 0 303 272 0 0 chr11 59071987 59072090 -89711382 + (TATG)n Simple_repeat Simple_repeat 2 104 0 1536 91 0 14 chr11 59072734 59072944 -89710528 + AluY SINE Alu 103 309 -2 4998 148 8 12 chr11 59072953 59073901 -89709571 + L1PA16 LINE L1 5193 6137 -29 1223 216 51 89 chr11 59074226 59074740 -89708732 + MLT1D LTR MaLR 12 505 0 351 352 16 40 chr11 59074757 59075010 -89708462 + L1M4 LINE L1 3693 3939 -2207 3400 191 5 17 chr11 59075039 59075812 -89707660 - L1 LINE L1 -1584 4562 3799 21 0 0 0 chr11 59075893 59075914 -89707558 + AT_rich Low_complexity Low_complexity 1 21 0 2392 74 0 17 chr11 59075924 59076222 -89707250 + AluY SINE Alu 3 295 -16 6465 177 7 5 chr11 59076222 59077623 -89705849 - HERVL18 LTR ERVL -4575 1472 1 1162 236 144 3 chr11 59077629 59077942 -89705530 - LTR18A LTR ERVL 0 357 1 1644 186 16 31 chr11 59078271 59078588 -89704884 - AluJb SINE Alu 0 312 1 312 70 0 0 chr11 59079247 59079290 -89704182 + (CA)n Simple_repeat Simple_repeat 1 43 0 268 356 38 30 chr11 59081054 59081186 -89702286 + MIR3 SINE MIR 35 167 -41 393 313 45 6 chr11 59081811 59081987 -89701485 + MIR3 SINE MIR 4 141 -67 195 170 0 0 chr11 59082073 59082120 -89701352 + T-rich Low_complexity Low_complexity 1 47 0 1939 146 3 10 chr11 59082692 59083000 -89700472 - AluSg1 SINE Alu -3 306 1 382 91 212 0 chr11 59084418 59084484 -89698988 + MADE1 DNA Mariner 1 80 0 229 343 42 78 chr11 59084689 59084855 -89698617 + MIR3 SINE MIR 19 178 -30 525 231 148 0 chr11 59085351 59085520 -89697952 - MER3 DNA MER1_type -4 205 12 428 211 77 0 chr11 59086072 59086176 -89697296 + L1MC3 LINE L1 7429 7540 -245 1417 202 38 38 chr11 59087039 59087460 -89696012 + L1MC3 LINE L1 7198 7618 -167 1651 92 0 0 chr11 59088866 59089095 -89694377 - L1PA13 LINE L1 -1 6162 5934 377 154 26 0 chr11 59089095 59089168 -89694304 + L1PA13 LINE L1 5858 5935 -202 227 371 107 11 chr11 59091605 59091783 -89691689 + MIR SINE MIR 19 213 -49 237 245 0 43 chr11 59091814 59091908 -89691564 + (TAA)n Simple_repeat Simple_repeat 1 90 0 24 53 0 0 chr11 59091962 59092000 -89691472 + AT_rich Low_complexity Low_complexity 1 38 0 181 300 0 0 chr11 59092985 59093035 -89690437 + MIR SINE MIR 174 223 -39 687 195 74 70 chr11 59093280 59093495 -89689977 - MER20 DNA MER1_type -3 216 1 1052 165 38 0 chr11 59093598 59093810 -89689662 - L1MB2 LINE L1 -2 6169 5950 1715 184 75 34 chr11 59093844 59094283 -89689189 + LTR2B LTR ERV1 34 490 0 48992 65 25 16 chr11 59094283 59101114 -89682358 + Harlequin LTR ERV1 1 6895 -1 1561 195 91 35 chr11 59101136 59101567 -89681905 + LTR2B LTR ERV1 34 488 -2 1238 166 20 74 chr11 59101569 59101865 -89681607 - L1MB2 LINE L1 -226 5945 5666 666 288 4 10 chr11 59101861 59102092 -89681380 - L1M3c LINE L1 -4996 2041 1813 * 2896 129 10 10 chr11 59102360 59102847 -89680625 - LTR15 LTR ERV1 -6 487 1 533 261 13 20 chr11 59102930 59103112 -89680360 - L1M3c LINE L1 -5737 1290 3 367 269 29 0 chr11 59103752 59103923 -89679549 + (TA)n Simple_repeat Simple_repeat 2 177 0 405 39 0 0 chr11 59103958 59104009 -89679463 + (TG)n Simple_repeat Simple_repeat 2 52 0 342 67 0 0 chr11 59104008 59104053 -89679419 + (TA)n Simple_repeat Simple_repeat 1 45 0 * 26 30 0 0 chr11 59104862 59104895 -89678577 + AT_rich Low_complexity Low_complexity 1 33 0 23 33 0 0 chr11 59105201 59105231 -89678241 + AT_rich Low_complexity Low_complexity 1 30 0 665 236 0 0 chr11 59105335 59105462 -89678010 + FRAM SINE Alu 1 127 -49 559 379 68 25 chr11 59105495 59105980 -89677492 + L1MEc LINE L1 100 605 -5791 2031 132 132 11 chr11 59106087 59106467 -89677005 + MSTA LTR MaLR 3 428 0 1212 289 87 20 chr11 59106490 59107488 -89675984 + L1MEc LINE L1 679 1743 -4653 747 238 16 20 chr11 59107480 59107732 -89675740 + L1M4 LINE L1 4456 4706 -1440 * 22 35 0 0 chr11 59108311 59108340 -89675132 + AT_rich Low_complexity Low_complexity 1 29 0 276 53 0 0 chr11 59108653 59108691 -89674781 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 6301 68 6 54 chr11 59108691 59109672 -89673800 - SVA Other Other -23 1363 430 3111 92 32 78 chr11 59109683 59110249 -89673223 - SVA Other Other -520 866 327 22 0 0 0 chr11 59111557 59111579 -89671893 + AT_rich Low_complexity Low_complexity 1 22 0 355 239 178 37 chr11 59111656 59111819 -89671653 - MIR SINE MIR -23 239 54 1808 178 0 7 chr11 59111845 59112154 -89671318 + AluJb SINE Alu 1 307 -5 351 345 0 0 chr11 59112524 59112634 -89670838 - L2 LINE L2 -475 2839 2730 475 335 47 35 chr11 59113851 59114108 -89669364 - MIR SINE MIR -2 260 1 1242 109 0 0 chr11 59114835 59115186 -89668286 + (TA)n Simple_repeat Simple_repeat 1 351 0 243 88 0 0 chr11 59115321 59115355 -89668117 + (TA)n Simple_repeat Simple_repeat 1 34 0 306 270 114 3 chr11 59116915 59117108 -89666364 + MLT1E1 LTR MaLR 1 263 -391 726 276 46 0 chr11 59117166 59117405 -89666067 + MLT1E1 LTR MaLR 405 654 0 263 288 45 45 chr11 59117604 59117715 -89665757 + MIR3 SINE MIR 5 115 -93 227 264 0 0 chr11 59117901 59117954 -89665518 + MLT1D LTR MaLR 5 57 -448 1202 218 61 85 chr11 59118005 59118450 -89665022 + MLT1D LTR MaLR 72 505 0 375 321 0 0 chr11 59118771 59118877 -89664595 - L2 LINE L2 -27 3286 3181 708 254 28 0 chr11 59118885 59119066 -89664406 - MER58A DNA MER1_type -8 216 31 341 238 0 0 chr11 59119304 59119384 -89664088 - MER116 DNA Mariner 0 80 1 618 237 7 22 chr11 59119764 59119899 -89663573 - MER45A DNA AcHobo -44 134 2 242 333 27 18 chr11 59119994 59120105 -89663367 + MIR SINE MIR 2 113 -149 1986 102 0 72 chr11 59120471 59120803 -89662669 + AluSq SINE Alu 1 310 0 2487 67 0 0 chr11 59121152 59121451 -89662021 - AluY SINE Alu -12 299 1 2240 100 7 7 chr11 59122748 59123048 -89660424 - AluSx SINE Alu -12 300 1 32 43 0 0 chr11 59124239 59124285 -89659187 + AT_rich Low_complexity Low_complexity 1 46 0 583 288 99 30 chr11 59125195 59125428 -89658044 + MIR SINE MIR 14 262 0 237 61 41 20 chr11 59125438 59125487 -89657985 + (TA)n Simple_repeat Simple_repeat 2 51 0 1168 148 83 5 chr11 59125522 59125738 -89657734 + MLT2A2 LTR ERVL 1 233 -220 503 45 0 0 chr11 59125736 59125803 -89657669 + MLT2A2 LTR ERVL 382 448 -5 * 344 45 0 0 chr11 59125800 59125844 -89657628 + MLT2A2 LTR ERVL 410 453 0 * 418 104 0 0 chr11 59125844 59125911 -89657561 + HERVL-A2-A2 LTR ERVL 1 67 -5587 * 37659 96 6 7 chr11 59125903 59126387 -89657085 + HERVL-A2-A2 LTR ERVL 296 779 -4875 8441 62 3 5 chr11 59126387 59127460 -89656012 + MER11C LTR ERVK 1 1071 0 37659 96 6 7 chr11 59127460 59132341 -89651131 + HERVL-A2-A2 LTR ERVL 779 5654 0 3255 106 4 9 chr11 59132343 59132796 -89650676 + MLT2A2 LTR ERVL 3 453 0 21 0 0 0 chr11 59133083 59133104 -89650368 + AT_rich Low_complexity Low_complexity 1 21 0 465 316 48 0 chr11 59133214 59133420 -89650052 + MLT1L LTR MaLR 20 235 -380 256 300 60 27 chr11 59133454 59133604 -89649868 + MLT1L LTR MaLR 458 612 -3 202 316 13 0 chr11 59133641 59133717 -89649755 - MIR SINE MIR -108 154 78 6474 230 29 25 chr11 59134464 59136112 -89647360 + L1MC1 LINE L1 2953 4620 -1713 2308 77 0 0 chr11 59136112 59136397 -89647075 + AluY SINE Alu 1 285 -26 6474 230 29 25 chr11 59136397 59137776 -89645696 + L1MC1 LINE L1 4620 5992 -341 1408 194 14 0 chr11 59137779 59138062 -89645410 + L1MC1 LINE L1 6047 6333 0 298 148 68 34 chr11 59138065 59138153 -89645319 - Charlie1 DNA MER1_type -143 2618 2528 25 0 0 0 chr11 59138546 59138571 -89644901 + AT_rich Low_complexity Low_complexity 1 25 0 31 96 0 0 chr11 59140090 59140184 -89643288 + AT_rich Low_complexity Low_complexity 1 94 0 338 287 54 0 chr11 59140911 59141078 -89642394 + L1MEd LINE L1 964 1139 -4980 * 2584 271 42 16 chr11 59141075 59141127 -89642345 + L1M2a LINE L1 400 449 -7117 342 0 0 0 chr11 59141127 59141165 -89642307 + (CA)n Simple_repeat Simple_repeat 2 39 0 2584 271 42 16 chr11 59141165 59142443 -89641029 + L1M2a LINE L1 449 1983 -5583 2498 265 114 8 chr11 59142436 59143191 -89640281 + MSTD-int LTR MaLR 901 1735 0 * 891 258 75 29 chr11 59143191 59143497 -89639975 + MSTD LTR MaLR 1 320 -76 749 226 92 22 chr11 59143510 59143919 -89639553 + L1M2a LINE L1 3394 3826 -3739 1506 172 104 0 chr11 59143974 59144224 -89639248 - AluJb SINE Alu -25 287 12 2156 222 37 52 chr11 59144741 59145466 -89638006 - L1M4 LINE L1 -1121 5025 4312 5093 102 12 25 chr11 59145480 59145576 -89637896 - L1PA13 LINE L1 -8 6155 6059 2293 99 3 10 chr11 59145576 59145878 -89637594 - AluSx SINE Alu -12 300 1 5093 102 12 25 chr11 59145878 59146613 -89636859 - L1PA13 LINE L1 -104 6059 5335 226 235 29 0 chr11 59146608 59146676 -89636796 - L1M4 LINE L1 -1822 4324 4255 * 1739 245 68 38 chr11 59146693 59147596 -89635876 - L1M4 LINE L1 -2163 3983 3054 778 193 6 6 chr11 59147741 59147922 -89635550 + L1M4 LINE L1 5592 5772 -406 450 301 148 31 chr11 59147955 59148184 -89635288 + MIR SINE MIR 7 262 0 2246 67 0 3 chr11 59149840 59150166 -89633306 - AluY SINE Alu 0 325 1 343 339 35 17 chr11 59151011 59151126 -89632346 + MIR SINE MIR 20 136 -72 260 319 123 0 chr11 59152597 59152735 -89630737 - L2 LINE L2 -1 3312 3158 243 356 0 45 chr11 59152841 59152973 -89630499 - L2 LINE L2 -177 3095 2970 * 297 238 133 5 chr11 59152971 59153079 -89630393 - MIR SINE MIR -63 145 34 371 334 77 33 chr11 59153132 59153584 -89629888 - L2 LINE L2 -604 2710 2239 24 0 0 0 chr11 59154086 59154110 -89629362 + AT_rich Low_complexity Low_complexity 1 24 0 422 215 32 38 chr11 59155075 59155233 -89628239 + L1M4 LINE L1 2343 2499 -3647 1829 207 18 9 chr11 59156475 59156915 -89626557 + L1PA13 LINE L1 1532 1975 -4812 565 130 10 10 chr11 59156969 59157069 -89626403 - L1MA10 LINE L1 -13 6321 6222 864 268 22 46 chr11 59157093 59157593 -89625879 - L1MC5 LINE L1 -48 7913 7426 12444 88 36 2 chr11 59157632 59160200 -89623272 - L1PA7 LINE L1 -14 6140 3511 299 191 59 0 chr11 59160483 59160551 -89622921 - MER91B DNA MER1_type -39 151 80 256 283 123 65 chr11 59160938 59161076 -89622396 - MIR SINE MIR -26 236 91 21 0 0 0 chr11 59161396 59161417 -89622055 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 59161849 59161870 -89621602 + AT_rich Low_complexity Low_complexity 1 21 0 3570 197 66 71 chr11 59162819 59163935 -89619537 + LTR28 LTR ERV1 1 634 -2 207 219 0 0 chr11 59164159 59164200 -89619272 + A-rich Low_complexity Low_complexity 1 41 0 2517 141 20 45 chr11 59164887 59165496 -89617976 + MER4B LTR ERV1 1 766 0 1876 163 3 0 chr11 59166003 59166344 -89617128 - AluSx SINE Alu 0 342 1 2610 173 43 10 chr11 59166529 59167108 -89616364 - L1MC3 LINE L1 -7 7778 7181 234 218 0 0 chr11 59167108 59167163 -89616309 - MLT1F1 LTR MaLR -450 117 63 23 0 0 0 chr11 59168242 59168265 -89615207 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr11 59168308 59168329 -89615143 + AT_rich Low_complexity Low_complexity 1 21 0 309 333 48 51 chr11 59168964 59169276 -89614196 + MLT1K LTR MaLR 102 412 -176 1075 175 40 50 chr11 59169779 59170132 -89613340 + LTR10B LTR ERV1 255 505 0 213 303 156 18 chr11 59170688 59170797 -89612675 - L2 LINE L2 -5 3267 3144 230 345 65 76 chr11 59170919 59171194 -89612278 - L2 LINE L2 -346 2968 2697 510 274 48 39 chr11 59173082 59173312 -89610160 + L3 LINE CR1 682 913 -664 542 331 0 0 chr11 59173387 59173565 -89609907 - MER5B DNA MER1_type 0 178 1 805 206 100 0 chr11 59173575 59173745 -89609727 - MER5A DNA MER1_type -2 187 1 188 146 18 91 chr11 59173745 59173772 -89609700 + L3 LINE CR1 1112 1134 -443 231 167 0 0 chr11 59174343 59174385 -89609087 + (CA)n Simple_repeat Simple_repeat 1 42 0 222 316 213 0 chr11 59174452 59174588 -89608884 - MIR3 SINE MIR -3 205 41 187 351 21 21 chr11 59174762 59174856 -89608616 + MIR SINE MIR 49 142 -66 809 270 84 32 chr11 59176084 59176428 -89607044 - L2 LINE L2 -367 2947 2586 209 384 23 12 chr11 59176902 59176988 -89606484 - MIR SINE MIR -106 102 16 273 105 0 0 chr11 59177276 59177314 -89606158 + L1PA15 LINE L1 6066 6103 -62 930 263 61 33 chr11 59177379 59177740 -89605732 + L2 LINE L2 2585 2955 -359 13145 201 26 7 chr11 59177803 59180175 -89603297 - L1PA15 LINE L1 -65 6100 3624 342 0 0 0 chr11 59180175 59180213 -89603259 + (TG)n Simple_repeat Simple_repeat 2 39 0 13145 201 26 7 chr11 59180213 59181782 -89601690 - L1PA15 LINE L1 -2541 3624 2086 3087 231 38 31 chr11 59181789 59183433 -89600039 + L1MCb LINE L1 115 1735 -4829 247 331 183 18 chr11 59183776 59183945 -89599527 - MIR3 SINE MIR -6 202 6 403 319 66 8 chr11 59185500 59185741 -89597731 + HAL1 LINE L1 32 286 -2221 2130 119 36 28 chr11 59185798 59186159 -89597313 - THE1B LTR MaLR 0 364 1 821 248 90 52 chr11 59186214 59186750 -89596722 + HAL1 LINE L1 1846 2401 -106 202 310 62 18 chr11 59186774 59186887 -89596585 + L2 LINE L2 1892 2009 -1305 539 231 136 7 chr11 59186902 59187049 -89596423 - MIR SINE MIR -49 213 48 864 131 0 0 chr11 59187054 59187176 -89596296 + AluSq/x SINE Alu 1 122 -190 232 200 0 17 chr11 59187178 59187238 -89596234 + (TTATA)n Simple_repeat Simple_repeat 1 59 0 341 73 93 13 chr11 59187238 59187388 -89596084 + (TA)n Simple_repeat Simple_repeat 2 163 0 385 338 129 23 chr11 59187532 59188097 -89595375 + L2 LINE L2 1994 2618 -696 272 255 134 0 chr11 59188229 59188336 -89595136 + MIR SINE MIR 34 164 -66 * 292 333 0 60 chr11 59188329 59188479 -89594993 + L2 LINE L2 2967 3107 -165 267 369 94 20 chr11 59188563 59188712 -89594760 + L2 LINE L2 3112 3271 -1 536 65 26 13 chr11 59188996 59189073 -89594399 - MADE1 DNA Mariner -2 78 1 266 333 37 0 chr11 59190221 59190302 -89593170 - MIR SINE MIR -72 136 53 1474 165 100 0 chr11 59191946 59192207 -89591265 - AluJb SINE Alu -25 287 1 378 189 0 15 chr11 59192825 59192918 -89590554 - L1M4 LINE L1 -440 5744 5654 519 274 152 39 chr11 59192923 59193153 -89590319 + MIR SINE MIR 7 262 0 1668 139 101 0 chr11 59194066 59194324 -89589148 + AluJb SINE Alu 5 288 -24 5440 161 21 28 chr11 59194335 59195413 -89588059 - MER11C LTR ERVK 0 1071 1 751 252 71 44 chr11 59195461 59195975 -89587497 - L1 LINE L1 -3738 3429 2898 1308 257 68 16 chr11 59196026 59196392 -89587080 - MSTD LTR MaLR -11 385 1 2822 268 103 4 chr11 59196404 59197148 -89586324 - MSTD-int LTR MaLR -12 1723 906 2701 277 44 13 chr11 59197147 59198415 -89585057 - L1 LINE L1 -5583 1585 53 * 429 20 0 0 chr11 59198415 59198465 -89585007 + (TG)n Simple_repeat Simple_repeat 2 51 0 2701 277 44 13 chr11 59198465 59198513 -89584959 - L1 LINE L1 -7115 53 8 466 298 29 0 chr11 59198515 59198686 -89584786 - L1MEd LINE L1 -4980 1139 964 32 113 0 0 chr11 59199410 59199561 -89583911 + AT_rich Low_complexity Low_complexity 1 151 0 2296 102 0 0 chr11 59200358 59200662 -89582810 + AluSc SINE Alu 1 304 -5 302 143 36 36 chr11 59201828 59201886 -89581586 + Charlie1 DNA MER1_type 2535 2595 -166 2012 109 0 7 chr11 59201886 59202162 -89581310 - AluSg SINE Alu -2 308 35 302 143 36 36 chr11 59202162 59202187 -89581285 + Charlie1 DNA MER1_type 2594 2618 -143 1214 220 18 0 chr11 59202190 59202472 -89581000 - L1MC1 LINE L1 0 6333 6047 7666 221 39 16 chr11 59202475 59203733 -89579739 - L1MC1 LINE L1 -341 5992 4764 531 0 0 0 chr11 59203733 59203792 -89579680 + (TTC)n Simple_repeat Simple_repeat 3 61 0 7666 221 39 16 chr11 59203792 59205504 -89577968 - L1MC1 LINE L1 -1569 4764 2953 316 298 53 13 chr11 59206369 59206520 -89576952 - MLT1L LTR MaLR 0 615 459 618 239 76 11 chr11 59206579 59206763 -89576709 - MLT1L LTR MaLR -404 211 16 52 69 0 0 chr11 59206849 59206950 -89576522 + AT_rich Low_complexity Low_complexity 1 101 0 407 319 115 22 chr11 59207277 59207503 -89575969 - MIR SINE MIR -3 259 13 2099 78 39 26 chr11 59208293 59208600 -89574872 - AluY SINE Alu 0 311 1 2716 29 0 0 chr11 59209174 59209482 -89573990 + AluY SINE Alu 1 308 -3 2325 105 0 10 chr11 59210603 59210917 -89572555 - AluSp SINE Alu 0 313 3 183 304 148 17 chr11 59211244 59211359 -89572113 - L2 LINE L2 -661 2653 2524 2214 105 0 0 chr11 59212264 59212560 -89570912 + AluSx SINE Alu 1 296 -16 638 236 8 24 chr11 59213110 59213237 -89570235 + MER45A DNA AcHobo 2 126 -52 846 195 15 70 chr11 59213454 59213654 -89569818 + MER58A DNA MER1_type 35 223 -1 380 294 10 0 chr11 59213655 59213757 -89569715 + L2 LINE L2 3181 3283 -30 1477 239 60 29 chr11 59214081 59214495 -89568977 - MLT1D LTR MaLR 0 505 79 252 306 153 18 chr11 59214745 59214856 -89568616 - MIR SINE MIR -64 144 19 721 334 29 63 chr11 59215080 59215732 -89567740 - L1MEc LINE L1 -5722 674 45 908 115 0 0 chr11 59216256 59216378 -89567094 - AluSg SINE Alu -188 122 1 2725 204 17 8 chr11 59216378 59216982 -89566490 - L1 LINE L1 -2960 3186 2578 703 161 81 58 chr11 59216987 59217083 -89566389 - MER30 DNA MER1_type 0 230 127 1817 131 10 33 chr11 59217083 59217388 -89566084 + AluSg SINE Alu 1 298 -12 703 161 81 58 chr11 59217388 59217465 -89566007 - MER30 DNA MER1_type -103 127 53 695 96 0 0 chr11 59217578 59217672 -89565800 + THE1C LTR MaLR 282 375 0 4798 148 57 7 chr11 59217672 59218834 -89564638 + L1MA5 LINE L1 4930 6150 -150 574 260 9 0 chr11 59219516 59219679 -89563793 - L1MA10 LINE L1 -2 6319 6017 274 163 3 0 chr11 59219674 59219739 -89563733 - L1ME1 LINE L1 -204 5960 5892 * 1002 157 81 20 chr11 59219891 59220088 -89563384 - MLT2C1 LTR ERVL -65 332 124 244 174 0 0 chr11 59220088 59220134 -89563338 - L1MB7 LINE L1 -98 6086 6041 664 197 0 27 chr11 59220256 59220403 -89563069 - L1PA8A LINE L1 0 6131 5989 302 298 84 0 chr11 59220511 59220642 -89562830 + L1ME LINE L1 5302 5443 -719 6762 76 0 0 chr11 59220646 59221695 -89561777 - L1PA6 LINE L1 -8 6146 5099 235 200 82 12 chr11 59221797 59221882 -89561590 + L1ME4a LINE L1 6026 6116 -5 186 424 33 0 chr11 59222366 59222458 -89561014 - L2 LINE L2 -19 3253 3159 185 330 61 43 chr11 59222591 59222706 -89560766 - L2 LINE L2 -206 3066 2950 203 315 30 86 chr11 59222969 59223166 -89560306 + L2 LINE L2 2329 2514 -800 619 333 93 18 chr11 59223271 59223670 -89559802 - L2 LINE L2 -1019 2295 1867 806 250 31 27 chr11 59223772 59224028 -89559444 - L1ME2 LINE L1 -47 6117 5861 596 167 9 9 chr11 59224128 59224236 -89559236 + LTR24C LTR ERV1 528 635 0 2248 143 22 6 chr11 59224630 59224988 -89558484 + THE1B LTR MaLR 1 364 0 10038 110 30 36 chr11 59224988 59226578 -89556894 + THE1B-int LTR MaLR 1 1580 0 405 97 97 0 chr11 59226578 59226640 -89556832 + THE1B LTR MaLR 1 68 -307 482 219 70 0 chr11 59226652 59226780 -89556692 + L1MB4 LINE L1 6010 6146 -34 828 228 65 14 chr11 59226884 59227239 -89556233 + L1M4 LINE L1 2974 3346 -2800 2091 305 42 37 chr11 59227241 59228134 -89555338 + L1M4 LINE L1 1 1370 -5839 * 2761 248 30 13 chr11 59228112 59229008 -89554464 + L1M4 LINE L1 1609 2558 -4651 5278 164 28 15 chr11 59229008 59230305 -89553167 + L1MA5 LINE L1 4904 6208 -92 2627 259 42 8 chr11 59230305 59231142 -89552330 + L1M4 LINE L1 4460 5324 -1884 1491 122 33 19 chr11 59231145 59231415 -89552057 - HSMAR2 DNA Mariner -1 1301 1028 3424 146 61 8 chr11 59231415 59232023 -89551449 - HSMAR2 DNA Mariner -661 641 2 512 192 6 85 chr11 59232028 59232205 -89551267 + L1M4 LINE L1 5339 5501 -1707 2090 113 7 0 chr11 59233697 59233988 -89549484 - AluSx SINE Alu -19 293 1 23 54 0 0 chr11 59234762 59234799 -89548673 + AT_rich Low_complexity Low_complexity 1 37 0 273 305 21 0 chr11 59235234 59235329 -89548143 + MLT1J2 LTR MaLR 67 163 -287 21 0 0 0 chr11 59235635 59235656 -89547816 + AT_rich Low_complexity Low_complexity 1 21 0 225 235 29 0 chr11 59236263 59236331 -89547141 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 270 338 41 48 chr11 59236543 59236688 -89546784 + MLT1J LTR MaLR 150 293 -218 1319 229 11 0 chr11 59237708 59237970 -89545502 - AluJo SINE Alu -45 267 3 1915 158 0 0 chr11 59238015 59238320 -89545152 - AluSx SINE Alu 0 305 1 206 98 49 0 chr11 59238950 59238991 -89544481 + A-rich Low_complexity Low_complexity 2 44 0 1224 115 0 0 chr11 59239093 59239276 -89544196 + L1PA13 LINE L1 5979 6161 -2 566 186 57 8 chr11 59239625 59239749 -89543723 - L1ME LINE L1 -722 5444 5315 351 259 37 0 chr11 59239753 59239861 -89543611 - L1MD2 LINE L1 -17 6342 6231 270 271 83 10 chr11 59239880 59239976 -89543496 - L1MD2 LINE L1 -216 6143 6041 262 309 66 7 chr11 59239999 59240151 -89543321 + L1M4 LINE L1 5755 5915 -1293 2437 54 0 3 chr11 59240153 59240451 -89543021 - AluY SINE Alu -13 298 2 417 293 43 14 chr11 59240576 59240716 -89542756 - MIR3 SINE MIR -7 201 58 491 234 16 49 chr11 59242715 59242899 -89540573 - L1MA9 LINE L1 -24 6288 6111 25 31 0 0 chr11 59242999 59243031 -89540441 + AT_rich Low_complexity Low_complexity 1 32 0 2163 83 7 0 chr11 59243045 59243322 -89540150 - AluSc SINE Alu -30 279 1 3127 86 56 2 chr11 59243335 59243802 -89539670 - L1MA1 LINE L1 -5 6297 5806 39 22 0 0 chr11 59243802 59243848 -89539624 + AT_rich Low_complexity Low_complexity 1 46 0 270 234 39 13 chr11 59244741 59244752 -89538720 + MER5B DNA MER1_type 100 109 -69 2039 134 7 10 chr11 59244752 59245051 -89538421 - AluSx SINE Alu -14 298 1 270 234 39 13 chr11 59245051 59245116 -89538356 + MER5B DNA MER1_type 109 178 0 1021 60 8 0 chr11 59245463 59245597 -89537875 - L1PA3 LINE L1 0 6155 6021 1215 73 0 39 chr11 59245627 59245873 -89537599 + AluY SINE Alu 1 301 -10 2324 79 16 0 chr11 59246633 59246938 -89536534 - AluY SINE Alu -1 310 1 210 305 38 53 chr11 59247955 59248086 -89535386 - MIR SINE MIR -121 141 13 473 73 146 0 chr11 59249425 59249507 -89533965 - L1MB3 LINE L1 -3 6180 6087 410 134 7 53 chr11 59249654 59249803 -89533669 + (TCTCTG)n Simple_repeat Simple_repeat 1 142 0 630 145 0 28 chr11 59249803 59249982 -89533490 + (TC)n Simple_repeat Simple_repeat 1 174 0 22 0 0 0 chr11 59251739 59251761 -89531711 + AT_rich Low_complexity Low_complexity 1 22 0 436 254 93 88 chr11 59251931 59252124 -89531348 - MIR SINE MIR -67 195 2 8090 7 2 0 chr11 59252407 59253538 -89529934 - L1HS LINE L1 0 6155 5021 345 264 44 44 chr11 59303539 59303698 -89479774 + L1ME3A LINE L1 5975 6133 -37 276 155 14 28 chr11 59303704 59303775 -89479697 + LTR16A1 LTR ERVL 388 457 0 532 130 30 0 chr11 59303951 59304051 -89479421 + GA-rich Low_complexity Low_complexity 4 106 0 1096 212 95 6 chr11 59304051 59304376 -89479096 + LTR65 LTR ERV1 296 649 -20 222 91 0 0 chr11 59304422 59304455 -89479017 + (CA)n Simple_repeat Simple_repeat 2 34 0 570 250 23 0 chr11 59304495 59304667 -89478805 + L1M4c LINE L1 4 179 -6989 4767 270 26 16 chr11 59304723 59306805 -89476667 + L1M4c LINE L1 699 2817 -4351 6007 108 2 9 chr11 59306813 59308022 -89475450 - L1PA10 LINE L1 -3 6165 4955 3778 145 3 3 chr11 59308022 59308692 -89474780 + L1PA10 LINE L1 4257 4926 -1220 1386 172 41 34 chr11 59308692 59308960 -89474512 - THE1B LTR MaLR -92 272 3 5131 264 75 19 chr11 59308966 59309061 -89474411 + L1M4c LINE L1 2925 3013 -4154 3664 72 131 2 chr11 59309061 59309602 -89473870 + L1PA8 LINE L1 5561 6171 -1 5131 264 75 19 chr11 59309602 59311111 -89472361 + L1M4c LINE L1 3013 4729 -2438 360 0 0 0 chr11 59311111 59311151 -89472321 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 5131 264 75 19 chr11 59311151 59312049 -89471423 + L1M4c LINE L1 4729 5575 -1592 1401 207 128 93 chr11 59312138 59312858 -89470614 - LTR1B LTR ERV1 -81 745 1 585 208 127 12 chr11 59312858 59313031 -89470441 + L1M4c LINE L1 5579 5771 -1396 321 377 35 39 chr11 59314602 59314862 -89468610 + MIR SINE MIR 3 261 -1 182 156 22 0 chr11 59314862 59314907 -89468565 + (TA)n Simple_repeat Simple_repeat 2 47 0 204 351 0 43 chr11 59315022 59315116 -89468356 - L2 LINE L2 -69 3203 3114 2585 25 0 28 chr11 59315553 59315873 -89467599 - AluY SINE Alu 0 311 1 349 386 24 14 chr11 59316012 59316219 -89467253 + MLT1K LTR MaLR 24 232 -356 394 318 9 9 chr11 59316545 59316655 -89466817 + L2 LINE L2 2730 2839 -475 1141 152 99 0 chr11 59317025 59317216 -89466256 - AluJb SINE Alu -13 299 90 23 54 0 0 chr11 59317827 59317864 -89465608 + AT_rich Low_complexity Low_complexity 1 37 0 640 264 20 24 chr11 59318392 59318642 -89464830 - L1M4 LINE L1 -1393 4753 4505 1418 136 5 23 chr11 59318643 59318894 -89464578 - AluSg/x SINE Alu 0 320 74 250 337 87 14 chr11 59318937 59319225 -89464247 - L1MEc LINE L1 -5994 402 94 765 245 0 0 chr11 59319237 59319388 -89464084 - FRAM SINE Alu -15 151 1 2178 110 3 3 chr11 59319477 59319768 -89463704 + AluSx SINE Alu 1 291 -21 26 30 0 0 chr11 59319847 59319880 -89463592 + AT_rich Low_complexity Low_complexity 1 33 0 25 0 0 0 chr11 59319981 59320006 -89463466 + AT_rich Low_complexity Low_complexity 1 25 0 354 257 29 7 chr11 59320971 59321107 -89462365 + (TA)n Simple_repeat Simple_repeat 1 139 0 768 226 17 6 chr11 59322074 59322251 -89461221 + MLT1A1 LTR MaLR 185 363 -2 2298 247 50 20 chr11 59322254 59322513 -89460959 + MLT1A1-int LTR MaLR 3 253 -1468 2206 130 0 7 chr11 59322513 59322821 -89460651 + AluSx SINE Alu 1 306 -6 2298 247 50 20 chr11 59322821 59323255 -89460217 + MLT1A1-int LTR MaLR 253 763 -958 1390 201 58 84 chr11 59323254 59323294 -89460178 + L1MA9 LINE L1 5741 5780 -532 * 288 0 0 0 chr11 59323294 59323326 -89460146 + (CA)n Simple_repeat Simple_repeat 2 33 0 1390 201 58 84 chr11 59323326 59323766 -89459706 + L1MA9 LINE L1 5780 6230 -82 6938 56 3 36 chr11 59323766 59324591 -89458881 - L1PA7 LINE L1 -5 6149 5298 2127 133 0 3 chr11 59324591 59324891 -89458581 - AluSg SINE Alu -11 299 1 6938 56 3 36 chr11 59324891 59325102 -89458370 - L1PA7 LINE L1 -856 5298 5082 2503 46 13 7 chr11 59325102 59325405 -89458067 - AluY SINE Alu -6 305 1 6938 56 3 36 chr11 59325405 59325810 -89457662 - L1PA7 LINE L1 -1072 5082 4727 1390 201 58 84 chr11 59325810 59325876 -89457596 + L1MA9 LINE L1 6230 6274 -38 380 331 55 0 chr11 59325895 59326058 -89457414 - L1MC4 LINE L1 -164 7878 7707 360 285 42 36 chr11 59326275 59326468 -89457004 - L1MC4a LINE L1 -342 7466 7273 1718 204 11 19 chr11 59326468 59326836 -89456636 + MLT1A1 LTR MaLR 1 365 0 359 353 13 38 chr11 59328663 59328898 -89454574 + L1M3d LINE L1 370 598 -5533 391 258 16 23 chr11 59329071 59329199 -89454273 + L1M3d LINE L1 917 1043 -5098 313 134 164 0 chr11 59330600 59330667 -89452805 - L1PA12 LINE L1 -228 5935 5858 * 761 57 0 0 chr11 59330664 59330770 -89452702 + L1PA12 LINE L1 5934 6039 -129 633 206 114 6 chr11 59330962 59331137 -89452335 + MER3 DNA MER1_type 12 205 -4 208 335 55 82 chr11 59331630 59331812 -89451660 - MIR3 SINE MIR -29 179 3 527 89 13 0 chr11 59332001 59332080 -89451392 - MADE1 DNA Mariner 0 80 1 418 277 63 23 chr11 59334154 59334330 -89449142 - MIR3 SINE MIR -67 141 4 295 388 0 30 chr11 59334949 59335114 -89448358 - MIR3 SINE MIR -41 167 8 222 37 0 0 chr11 59336354 59336381 -89447091 + (CA)n Simple_repeat Simple_repeat 1 27 0 264 381 71 16 chr11 59336665 59336791 -89446681 - L2 LINE L2 -7 3265 3133 315 0 0 0 chr11 59336911 59336946 -89446526 + (TG)n Simple_repeat Simple_repeat 1 35 0 249 139 0 0 chr11 59336946 59336989 -89446483 + (GA)n Simple_repeat Simple_repeat 2 44 0 2129 200 34 62 chr11 59337086 59337702 -89445770 - LTR9 LTR ERV1 -13 599 1 1346 172 31 12 chr11 59337702 59337958 -89445514 - HUERS-P3 LTR ERV1 0 8919 8659 4581 174 6 4 chr11 59338129 59338928 -89444544 - HUERS-P3 LTR ERV1 -2016 6903 6103 8726 111 24 9 chr11 59338936 59339661 -89443811 - HUERS-P3 LTR ERV1 -3038 5881 5125 2238 72 4 0 chr11 59339661 59340000 -89443472 - AluY SINE Alu 0 340 1 8726 111 24 9 chr11 59340000 59340596 -89442876 - HUERS-P3 LTR ERV1 -3794 5125 4539 * 15057 163 21 12 chr11 59340589 59343712 -89439760 - HUERS-P3 LTR ERV1 -5635 3284 49 238 235 154 22 chr11 59343888 59344024 -89439448 - MIR SINE MIR -49 213 60 1863 127 29 93 chr11 59345544 59345963 -89437509 + MER4B LTR ERV1 3 394 -216 1060 131 79 23 chr11 59345971 59346380 -89437092 - MER4A LTR ERV1 -118 546 1 279 54 0 0 chr11 59346409 59346446 -89437026 + (CA)n Simple_repeat Simple_repeat 2 38 0 23 0 0 0 chr11 59346500 59346523 -89436949 + AT_rich Low_complexity Low_complexity 1 23 0 2224 127 0 0 chr11 59346693 59347000 -89436472 + AluSx SINE Alu 1 307 -5 314 364 102 36 chr11 59347807 59348336 -89435136 + L2 LINE L2 2697 3267 -5 2355 140 31 14 chr11 59348970 59349328 -89434144 + THE1B LTR MaLR 1 364 0 22 35 0 0 chr11 59350426 59350455 -89433017 + AT_rich Low_complexity Low_complexity 1 29 0 258 183 24 12 chr11 59350546 59350628 -89432844 + (TAAA)n Simple_repeat Simple_repeat 2 84 0 3500 164 49 6 chr11 59351726 59352360 -89431112 + L1MC3 LINE L1 7122 7782 -3 2820 122 16 73 chr11 59353091 59353519 -89429953 - MER4B LTR ERV1 0 766 206 2069 135 26 0 chr11 59353519 59353822 -89429650 - AluSx SINE Alu -1 311 1 2820 122 16 73 chr11 59353822 59354018 -89429454 - MER4B LTR ERV1 -560 206 1 251 28 28 0 chr11 59354699 59354735 -89428737 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 4124 192 51 72 chr11 59354962 59356095 -89427377 - LTR28 LTR ERV1 -3 1752 1 256 293 90 30 chr11 59357810 59357943 -89425529 + MIR SINE MIR 88 228 -34 289 167 211 44 chr11 59358391 59358481 -89424991 + MER91B DNA MER1_type 80 184 -6 573 259 86 0 chr11 59358680 59358842 -89424630 - MER97b DNA MER1_type? -874 179 4 1761 236 60 85 chr11 59359280 59359868 -89423604 - MLT1E LTR MaLR -8 585 13 1524 111 0 0 chr11 59360546 59360745 -89422727 + AluSq SINE Alu 1 199 -114 341 269 0 0 chr11 59361217 59361284 -89422188 - AluS SINE Alu -236 67 1 3723 50 14 0 chr11 59361284 59361723 -89421749 - LTR8 LTR ERV1 -246 445 1 29 59 0 15 chr11 59361787 59361812 -89421660 + AT_rich Low_complexity Low_complexity 1 25 -42 1677 60 0 23 chr11 59361812 59362029 -89421443 - AluY SINE Alu -17 294 83 29 59 0 15 chr11 59362029 59362071 -89421401 + AT_rich Low_complexity Low_complexity 25 67 0 744 86 0 0 chr11 59362080 59362185 -89421287 + L1MA4A LINE L1 6197 6301 -2 5077 96 49 7 chr11 59362878 59363611 -89419861 + LTR17 LTR ERV1 1 764 -16 1947 146 48 50 chr11 59363737 59364113 -89419359 + THE1C LTR MaLR 1 375 0 341 284 47 30 chr11 59364139 59364308 -89419164 + MLT1J LTR MaLR 30 201 -310 4022 149 16 65 chr11 59364537 59365263 -89418209 + LTR8 LTR ERV1 1 691 0 191 359 10 48 chr11 59365526 59365629 -89417843 - MIR3 SINE MIR -17 191 93 2299 83 13 29 chr11 59367583 59367896 -89415576 + AluSc SINE Alu 1 308 -1 3797 128 67 7 chr11 59367899 59368511 -89414961 - MER39B LTR ERV1 0 653 5 4026 154 29 31 chr11 59368778 59369551 -89413921 + LTR1 LTR ERV1 1 771 -14 5648 37 0 0 chr11 59369600 59370297 -89413175 - L1P LINE L1 -2633 3513 2817 384 276 0 10 chr11 59370410 59370508 -89412964 + L2 LINE L2 3193 3289 -24 2330 77 10 0 chr11 59371010 59371308 -89412164 + AluY SINE Alu 1 301 -10 447 267 19 9 chr11 59371315 59371420 -89412052 + MIR SINE MIR 21 126 -136 445 230 178 0 chr11 59371427 59371562 -89411910 - LTR50 LTR ERVL -24 771 613 219 233 0 0 chr11 59371591 59371634 -89411838 + MIR SINE MIR 111 153 -55 189 333 48 0 chr11 59372142 59372226 -89411246 - MIR SINE MIR -7 255 168 2050 132 7 7 chr11 59372444 59372740 -89410732 + AluSq SINE Alu 1 296 -17 214 358 109 15 chr11 59372772 59372909 -89410563 + MIR3 SINE MIR 21 170 -38 223 267 75 81 chr11 59373355 59373516 -89409956 - MIR SINE MIR -6 256 97 380 338 21 28 chr11 59373936 59374078 -89409394 + MIR3 SINE MIR 38 178 -30 276 305 91 53 chr11 59374431 59374673 -89408799 + L1ME4a LINE L1 5561 5821 -300 2301 122 16 35 chr11 59374673 59374726 -89408746 - L1MB3 LINE L1 -2 6181 6129 2011 116 20 20 chr11 59374726 59375048 -89408424 - AluSx SINE Alu 0 312 1 2301 122 16 35 chr11 59375048 59375371 -89408101 - L1MB3 LINE L1 -54 6129 5812 276 305 91 53 chr11 59375371 59375469 -89408003 + L1ME4a LINE L1 5821 5914 -207 538 315 102 14 chr11 59376121 59376337 -89407135 + MIR SINE MIR 28 262 0 433 265 68 15 chr11 59376736 59376868 -89406604 - MIR SINE MIR -71 191 53 251 363 10 0 chr11 59376878 59376980 -89406492 - MIR SINE MIR -1 261 159 201 264 111 0 chr11 59377560 59377632 -89405840 - MIR SINE MIR 0 262 183 227 316 147 0 chr11 59377634 59377770 -89405702 + MIR SINE MIR 97 252 -10 2212 100 0 0 chr11 59378743 59379051 -89404421 - AluSg SINE Alu 0 308 1 448 299 18 30 chr11 59379167 59379331 -89404141 + L2 LINE L2 86 247 -3067 724 285 43 78 chr11 59379336 59379683 -89403789 + L2 LINE L2 2634 2968 -346 254 368 58 16 chr11 59379997 59380187 -89403285 - L3 LINE CR1 -1082 495 298 306 313 47 62 chr11 59381997 59382189 -89401283 - MIR3 SINE MIR 0 208 20 533 205 27 18 chr11 59382447 59382559 -89400913 - MER81 DNA DNA -1 113 1 362 272 53 9 chr11 59383472 59383586 -89399886 - MIR3 SINE MIR -29 179 61 26 0 0 0 chr11 59386066 59386092 -89397380 + AT_rich Low_complexity Low_complexity 1 26 0 507 277 35 58 chr11 59386822 59386851 -89396621 + L1MEd LINE L1 822 850 -5410 2118 138 0 0 chr11 59386851 59387148 -89396324 + AluSx SINE Alu 1 297 -15 507 277 35 58 chr11 59387148 59387673 -89395799 + L1MEd LINE L1 850 1398 -4862 1415 119 0 5 chr11 59388153 59388347 -89395125 + AluSg/x SINE Alu 102 294 -18 2223 118 0 3 chr11 59389733 59390047 -89393425 + AluSq SINE Alu 1 313 0 30 27 0 0 chr11 59390074 59390111 -89393361 + AT_rich Low_complexity Low_complexity 1 37 0 273 261 15 0 chr11 59390566 59390631 -89392841 + MER20 DNA MER1_type 154 219 0 1147 97 17 11 chr11 59390979 59391155 -89392317 + L1MA9 LINE L1 6136 6312 0 255 293 180 28 chr11 59391258 59391469 -89392003 + MIR SINE MIR 3 256 -6 213 286 54 18 chr11 59392733 59392789 -89390683 - L2 LINE L2 -90 3182 3125 236 301 39 58 chr11 59393767 59393870 -89389602 + L2 LINE L2 3183 3283 -30 201 39 0 0 chr11 59393881 59393907 -89389565 + (CAAT)n Simple_repeat Simple_repeat 2 27 0 189 246 49 49 chr11 59394228 59394289 -89389183 - L2 LINE L2 -5 3308 3248 371 338 165 13 chr11 59394516 59395006 -89388466 - L2 LINE L2 -272 3000 2456 858 186 58 43 chr11 59395951 59396139 -89387333 + MER20 DNA MER1_type 29 219 0 181 300 0 0 chr11 59396325 59396385 -89387087 + MIR SINE MIR 151 210 -52 275 269 90 75 chr11 59396738 59396900 -89386572 + MIR SINE MIR 30 192 -62 386 254 42 25 chr11 59397558 59397676 -89385796 + L2 LINE L2 3194 3313 0 251 303 153 0 chr11 59397684 59397806 -89385666 - MIR SINE MIR -65 143 34 502 253 152 10 chr11 59398435 59398633 -89384839 + MIR SINE MIR 35 260 -2 362 325 101 48 chr11 59399596 59400142 -89383330 + L2 LINE L2 2664 3240 -73 2400 74 3 3 chr11 59400296 59400593 -89382879 - AluSp SINE Alu -16 297 1 303 331 122 6 chr11 59400752 59400933 -89382539 + MER102a DNA MER1_type 129 330 0 421 279 216 5 chr11 59401633 59401823 -89381649 - MIR SINE MIR -11 251 22 2230 227 97 27 chr11 59401932 59402221 -89381251 - L1ME2 LINE L1 -73 6091 5824 1832 175 0 19 chr11 59402221 59402535 -89380937 - AluJb SINE Alu -4 308 1 2230 227 97 27 chr11 59402535 59403508 -89379964 - L1ME2 LINE L1 -340 5824 4740 3216 179 33 5 chr11 59403511 59404177 -89379295 - L1MB4 LINE L1 0 6180 5496 2587 143 25 45 chr11 59404231 59404747 -89378725 - L1MA6 LINE L1 -4 6296 5791 935 171 28 0 chr11 59404789 59404970 -89378502 - L1MA6 LINE L1 -499 5801 5616 422 50 33 0 chr11 59404990 59405050 -89378422 + (TTTC)n Simple_repeat Simple_repeat 2 63 0 1394 184 18 44 chr11 59405101 59405373 -89378099 - AluJo SINE Alu -47 265 1 6368 236 50 18 chr11 59405380 59406048 -89377424 - L1MA6 LINE L1 -709 5471 4826 2308 115 0 0 chr11 59406048 59406360 -89377112 - AluSx SINE Alu 0 312 1 6368 236 50 18 chr11 59406360 59407936 -89375536 - L1MA6 LINE L1 -1354 4826 3157 1938 254 52 7 chr11 59407972 59408678 -89374794 - L1ME2 LINE L1 -1402 4744 4007 190 245 75 85 chr11 59408989 59409095 -89374377 - MIR SINE MIR -11 251 147 359 305 156 0 chr11 59409173 59409314 -89374158 + MIR SINE MIR 79 241 -21 21 0 0 0 chr11 59409774 59409795 -89373677 + AT_rich Low_complexity Low_complexity 1 21 0 217 310 23 23 chr11 59409825 59409912 -89373560 + L2 LINE L2 2712 2798 -516 256 315 30 113 chr11 59409956 59410159 -89373313 + L2 LINE L2 2906 3091 -181 233 370 103 14 chr11 59410385 59410531 -89372941 - MIR3 SINE MIR -14 194 36 302 351 0 0 chr11 59411259 59411427 -89372045 + (CATGC)n Simple_repeat Simple_repeat 1 168 0 653 109 0 8 chr11 59414187 59414306 -89369166 + (TA)n Simple_repeat Simple_repeat 1 118 0 258 310 179 22 chr11 59415179 59415363 -89368109 + MLT1J2 LTR MaLR 58 270 -180 1339 238 176 20 chr11 59415565 59416053 -89367419 - MLT1E2 LTR MaLR 0 626 63 342 284 35 9 chr11 59416173 59416289 -89367183 - L2 LINE L2 -599 2715 2597 1051 164 264 21 chr11 59416520 59416562 -89366910 - MLT2B1 LTR ERVL 0 520 489 902 43 21 14 chr11 59416562 59416703 -89366769 + (TAGA)n Simple_repeat Simple_repeat 1 142 0 1051 164 264 21 chr11 59416703 59416940 -89366532 - MLT2B1 LTR ERVL -31 489 173 24 0 0 0 chr11 59417002 59417026 -89366446 + AT_rich Low_complexity Low_complexity 1 24 0 593 226 49 0 chr11 59417226 59417390 -89366082 - MLT2B1 LTR ERVL -346 174 3 1313 166 52 31 chr11 59417391 59417681 -89365791 - ERVL-B1 LTR ERVL -6 5758 5463 225 0 0 0 chr11 59417682 59417707 -89365765 + (TG)n Simple_repeat Simple_repeat 2 26 0 2104 152 0 8 chr11 59417709 59418064 -89365408 - ERVL-B1 LTR ERVL -395 5369 5018 5222 248 42 53 chr11 59418064 59419815 -89363657 - MERVL LTR ERVL -2203 3282 1552 533 203 8 8 chr11 59419827 59419945 -89363527 - MLT2B2 LTR ERVL -394 121 4 385 328 157 5 chr11 59420531 59420729 -89362743 + MIR SINE MIR 18 245 -17 529 230 56 12 chr11 59420860 59421021 -89362451 + MLT1B LTR MaLR 1 168 -206 776 236 20 5 chr11 59421083 59421282 -89362190 + MLT1B LTR MaLR 189 390 0 2321 91 0 3 chr11 59422478 59422776 -89360696 + AluY SINE Alu 1 297 -14 22 35 0 0 chr11 59423064 59423093 -89360379 + AT_rich Low_complexity Low_complexity 1 29 0 353 250 29 36 chr11 59423653 59423793 -89359679 + MLT1H LTR MaLR 18 156 -393 266 321 12 6 chr11 59423915 59424077 -89359395 + MLT1H LTR MaLR 378 540 -9 2257 93 0 3 chr11 59424248 59424539 -89358933 - AluSx SINE Alu -22 290 1 449 311 15 7 chr11 59424559 59424694 -89358778 - MIR3 SINE MIR -43 165 30 193 302 26 69 chr11 59425219 59425335 -89358137 - L2 LINE L2 -1055 2259 2149 542 286 50 11 chr11 59425624 59425806 -89357666 - MER5A DNA MER1_type 0 189 1 209 280 110 8 chr11 59426647 59426765 -89356707 - L2 LINE L2 -7 3265 3136 2019 112 56 0 chr11 59427721 59428006 -89355466 + AluSg SINE Alu 1 301 -9 358 305 43 35 chr11 59428164 59428305 -89355167 - MIR3 SINE MIR -3 205 64 472 283 33 39 chr11 59428750 59428930 -89354542 - MIR3 SINE MIR -12 196 18 239 275 92 8 chr11 59429504 59429624 -89353848 + HAL1 LINE L1 2 131 -2376 310 364 65 29 chr11 59430353 59430628 -89352844 + L1MEd LINE L1 566 850 -5269 40678 36 22 1 chr11 59430633 59436657 -89346815 + L1PA2 LINE L1 1 6155 0 183 80 0 0 chr11 59436672 59436697 -89346775 + (A)n Simple_repeat Simple_repeat 1 25 0 33 25 0 0 chr11 59436943 59436983 -89346489 + AT_rich Low_complexity Low_complexity 1 40 0 395 286 68 19 chr11 59437046 59437371 -89346101 + L1MEd LINE L1 2315 2655 -3474 731 168 39 11 chr11 59437397 59437576 -89345896 - L1MA8 LINE L1 -5 6286 6103 2255 78 13 3 chr11 59437577 59437883 -89345589 + L1PA8 LINE L1 5864 6172 0 457 143 0 0 chr11 59437885 59437962 -89345510 - L1MA8 LINE L1 -181 6110 6034 380 269 9 0 chr11 59437966 59438074 -89345398 + L1MC4 LINE L1 1535 1643 -4753 2167 118 0 0 chr11 59438074 59438379 -89345093 + AluSx SINE Alu 1 305 -7 704 264 105 63 chr11 59438424 59439542 -89343930 + L1MC4 LINE L1 2768 3931 -2284 * 1010 234 139 30 chr11 59439535 59440447 -89343025 + L1MC4 LINE L1 5071 6126 -107 2048 143 3 3 chr11 59440474 59440775 -89342697 - AluSx SINE Alu -11 301 1 237 279 65 15 chr11 59440864 59441065 -89342407 + L1ME LINE L1 5267 5477 -685 2226 105 20 3 chr11 59441671 59441976 -89341496 + AluSq SINE Alu 1 310 -3 231 309 0 0 chr11 59442047 59442115 -89341357 + T-rich Low_complexity Low_complexity 1 68 0 1347 59 5 0 chr11 59442238 59442687 -89340785 + (CTATG)n Simple_repeat Simple_repeat 1 451 0 1026 237 28 16 chr11 59443488 59443741 -89339731 - MIR SINE MIR 0 262 7 825 234 81 0 chr11 59443769 59443966 -89339506 - Charlie1b DNA MER1_type -309 214 2 4486 105 12 13 chr11 59444473 59445148 -89338324 + L1PA15 LINE L1 5479 6152 -13 343 333 119 18 chr11 59445180 59445516 -89337956 + L1ME3A LINE L1 5033 5402 -744 581 259 52 14 chr11 59445525 59445737 -89337735 + L1ME3A LINE L1 5509 5728 -442 376 310 70 12 chr11 59445847 59446018 -89337454 + L1ME3A LINE L1 5767 5947 -223 225 0 0 0 chr11 59446024 59446049 -89337423 + (TCTCCC)n Simple_repeat Simple_repeat 1 25 0 6812 55 14 64 chr11 59446049 59447744 -89335728 + SVA Other Other 57 1386 0 482 297 77 0 chr11 59448312 59448494 -89334978 + MIR SINE MIR 64 259 -3 221 317 54 88 chr11 59449929 59450134 -89333338 - L3 LINE CR1 -80 1497 1300 181 116 23 23 chr11 59450150 59450193 -89333279 + GA-rich Low_complexity Low_complexity 2 44 0 519 270 79 0 chr11 59451523 59451675 -89331797 + MIR SINE MIR 8 171 -91 959 104 0 0 chr11 59452132 59452257 -89331215 - AluSp SINE Alu -188 125 1 2194 104 0 0 chr11 59453104 59453393 -89330079 - AluY SINE Alu -1 310 22 2999 123 29 0 chr11 59453393 59453879 -89329593 + Tigger1 DNA MER2_type 1797 2296 -122 1867 93 0 45 chr11 59453892 59454160 -89329312 - AluSc SINE Alu -23 286 31 299 264 38 19 chr11 59454294 59454400 -89329072 + MIR SINE MIR 112 219 -43 512 290 19 0 chr11 59454410 59454572 -89328900 - MIR SINE MIR -21 241 77 544 325 15 25 chr11 59454845 59455048 -89328424 + MIR3 SINE MIR 5 205 -3 1267 200 4 11 chr11 59455514 59455774 -89327698 - MLT1D LTR MaLR 0 505 248 1530 163 19 0 chr11 59455788 59456045 -89327427 - MER1B DNA MER1_type -72 267 6 222 240 0 20 chr11 59457212 59457262 -89326210 - MIR SINE MIR -19 243 195 820 331 71 28 chr11 59457434 59457974 -89325498 - L2 LINE L2 -56 3257 2694 2079 75 4 18 chr11 59458879 59459160 -89324312 + AluY SINE Alu 35 311 0 390 297 238 0 chr11 59459307 59459509 -89323963 + MIR SINE MIR 1 250 -12 714 211 0 0 chr11 59460455 59460578 -89322894 + FLAM_A SINE Alu 1 123 -10 27 29 0 0 chr11 59461665 59461699 -89321773 + AT_rich Low_complexity Low_complexity 1 34 0 251 272 103 29 chr11 59462146 59462282 -89321190 + MIR SINE MIR 114 259 -3 211 316 0 0 chr11 59463338 59463395 -89320077 - L2 LINE L2 -519 2795 2739 451 280 36 47 chr11 59463451 59463730 -89319742 - MER31-int LTR ERV1 -1331 3605 3330 2192 111 44 36 chr11 59463944 59464305 -89319167 - THE1B LTR MaLR 0 364 1 295 218 186 45 chr11 59465184 59465340 -89318132 + HAL1b LINE L1 1171 1348 0 553 352 125 19 chr11 59466764 59467276 -89316196 - L2 LINE L2 -1746 1568 1003 613 230 135 39 chr11 59467884 59468114 -89315358 - MIR SINE MIR 0 262 11 362 164 0 0 chr11 59468257 59468318 -89315154 + Tigger2 DNA MER2_type 1 61 -2657 184 309 107 0 chr11 59468319 59468403 -89315069 - L2 LINE L2 -1987 1327 1235 5119 95 47 6 chr11 59468496 59469284 -89314188 + SVA Other Other 23 842 -544 24 32 0 0 chr11 59469634 59469665 -89313807 + AT_rich Low_complexity Low_complexity 1 31 0 371 247 24 29 chr11 59469936 59470106 -89313366 - L1ME LINE L1 -348 5773 5605 805 266 90 4 chr11 59470188 59470444 -89313028 - L2 LINE L2 0 3313 3036 568 293 49 9 chr11 59470511 59470736 -89312736 + L1M4b LINE L1 1 234 -6625 2018 134 43 40 chr11 59470739 59471113 -89312359 + THE1C LTR MaLR 1 375 0 283 331 103 40 chr11 59471327 59471629 -89311843 + L1M4b LINE L1 830 1150 -5705 1913 144 36 0 chr11 59471629 59471962 -89311510 - MLT1B LTR MaLR -5 385 41 387 213 82 58 chr11 59471994 59472191 -89311281 + L1M4b LINE L1 1291 1498 -5361 37895 38 27 2 chr11 59472208 59477124 -89306348 + L1P LINE L1 4 5044 -1102 21 0 0 0 chr11 59477670 59477691 -89305781 + AT_rich Low_complexity Low_complexity 1 21 0 371 262 187 21 chr11 59478445 59478632 -89304840 + MIR SINE MIR 31 248 -14 322 287 120 48 chr11 59478664 59478831 -89304641 + MIR3 SINE MIR 16 194 -14 324 333 0 11 chr11 59479171 59479202 -89304270 + MIR SINE MIR 44 74 -146 1882 167 0 0 chr11 59479202 59479508 -89303964 + AluJo SINE Alu 1 306 -6 324 333 0 11 chr11 59479508 59479591 -89303881 + MIR SINE MIR 74 153 -67 223 275 145 0 chr11 59479976 59480045 -89303427 - MIR3 SINE MIR -5 203 125 234 281 158 50 chr11 59480055 59480194 -89303278 - MIR SINE MIR -2 260 107 570 313 110 17 chr11 59480254 59480554 -89302918 - L2 LINE L2 0 3313 2986 577 298 47 0 chr11 59480562 59480733 -89302739 - MIR SINE MIR -65 197 19 2209 125 0 0 chr11 59480762 59481058 -89302414 - AluSx SINE Alu -16 296 1 235 330 39 10 chr11 59481071 59481174 -89302298 - MIR3 SINE MIR -100 108 3 306 330 37 0 chr11 59483920 59484029 -89299443 + MIR SINE MIR 51 163 -99 185 219 24 0 chr11 59484728 59484769 -89298703 + L3b LINE CR1 1540 1581 -2 229 248 171 78 chr11 59485963 59486092 -89297380 - MIR3 SINE MIR -51 157 17 619 250 80 67 chr11 59486148 59486372 -89297100 + MIR SINE MIR 13 239 -23 285 247 25 0 chr11 59486471 59486552 -89296920 + (TA)n Simple_repeat Simple_repeat 1 83 0 244 288 12 12 chr11 59489645 59489725 -89293747 - Charlie4 DNA MER1_type 0 1961 1882 350 339 25 0 chr11 59490015 59490136 -89293336 - L2 LINE L2 -6 3307 3184 296 266 63 0 chr11 59491093 59491172 -89292300 + MIR3 SINE MIR 111 194 -14 23 0 0 0 chr11 59491332 59491355 -89292117 + AT_rich Low_complexity Low_complexity 1 23 0 699 271 119 37 chr11 59492981 59493276 -89290196 + L2 LINE L2 370 688 -2626 189 74 0 0 chr11 59493278 59493305 -89290167 + (CA)n Simple_repeat Simple_repeat 2 28 0 411 21 0 0 chr11 59493336 59493384 -89290088 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 2381 111 19 30 chr11 59493391 59493759 -89289713 + THE1B LTR MaLR 1 364 0 11685 88 11 3 chr11 59493760 59495325 -89288147 + THE1B-int LTR MaLR 2 1580 0 1089 89 26 74 chr11 59495326 59495516 -89287956 - THE1B LTR MaLR -183 181 1 1957 285 109 10 chr11 59495517 59496198 -89287274 + L2 LINE L2 709 1456 -1858 216 209 0 0 chr11 59496305 59496348 -89287124 + A-rich Low_complexity Low_complexity 1 43 0 2261 93 0 19 chr11 59497713 59498026 -89285446 - AluSx SINE Alu -5 307 1 297 0 0 0 chr11 59498134 59498167 -89285305 + (CA)n Simple_repeat Simple_repeat 2 34 0 * 423 0 0 0 chr11 59498166 59498213 -89285259 + (GA)n Simple_repeat Simple_repeat 2 48 0 191 374 25 43 chr11 59498442 59498605 -89284867 - L2 LINE L2 -904 2410 2251 362 363 14 14 chr11 59498620 59498766 -89284706 - MIR SINE MIR -112 150 5 28 29 0 0 chr11 59500190 59500225 -89283247 + AT_rich Low_complexity Low_complexity 1 35 0 2273 67 11 3 chr11 59500616 59500901 -89282571 + AluY SINE Alu 1 287 -24 262 247 74 12 chr11 59501348 59501429 -89282043 - L2 LINE L2 -1 3271 3186 216 289 93 10 chr11 59501423 59501520 -89281952 - L2 LINE L2 -837 2477 2373 * 1075 222 62 0 chr11 59501990 59502215 -89281257 + MIR SINE MIR 18 256 -6 211 319 187 11 chr11 59502508 59502599 -89280873 - L2 LINE L2 -11 3261 3155 2172 95 10 0 chr11 59503048 59503342 -89280130 - AluSq SINE Alu -12 301 5 216 346 93 0 chr11 59503600 59503707 -89279765 - MIR3 SINE MIR -7 201 85 21 57 0 0 chr11 59504990 59505025 -89278447 + AT_rich Low_complexity Low_complexity 1 35 0 225 0 0 0 chr11 59506935 59506960 -89276512 + (A)n Simple_repeat Simple_repeat 1 25 0 216 377 14 0 chr11 59507050 59507119 -89276353 - MER5A DNA MER1_type -63 126 57 1471 231 50 74 chr11 59507218 59507814 -89275658 + L1MD2 LINE L1 5764 6345 -14 538 313 45 10 chr11 59507945 59508146 -89275326 + MIR SINE MIR 55 262 0 766 99 0 8 chr11 59508464 59508585 -89274887 - L1MA8 LINE L1 -13 6278 6159 21 36 0 0 chr11 59509679 59509707 -89273765 + AT_rich Low_complexity Low_complexity 1 28 0 387 220 180 7 chr11 59509748 59509898 -89273574 - MER104 DNA Tc2 -3 177 2 435 306 112 10 chr11 59509967 59510173 -89273299 + MIR SINE MIR 30 256 -6 889 200 33 0 chr11 59510664 59510879 -89272593 + L1M4 LINE L1 5160 5381 -765 30917 30 0 0 chr11 59510982 59515467 -89268005 + L1PA3 LINE L1 1666 6152 -3 2075 105 7 0 chr11 59515615 59515900 -89267572 - AluSx SINE Alu -25 287 1 359 255 28 0 chr11 59515900 59516006 -89267466 - L1MEc LINE L1 -4753 1643 1535 478 143 0 0 chr11 59516010 59516087 -89267385 + L1MA8 LINE L1 6034 6110 -181 2249 78 13 3 chr11 59516089 59516395 -89267077 - L1PA8 LINE L1 0 6172 5864 749 168 39 11 chr11 59516396 59516575 -89266897 + L1MA8 LINE L1 6103 6286 -5 520 293 78 16 chr11 59516601 59516922 -89266550 - L1M4 LINE L1 -3474 2672 2332 33 25 0 0 chr11 59516985 59517025 -89266447 + AT_rich Low_complexity Low_complexity 1 40 0 7862 16 0 0 chr11 59517313 59518808 -89264664 - L1PA2 LINE L1 0 6155 4661 1604 21 0 0 chr11 59518808 59518995 -89264477 + L1P2 LINE L1 5636 5822 -333 1174 151 11 11 chr11 59519095 59519280 -89264192 - AluSx SINE Alu -127 185 1 1080 287 61 24 chr11 59519534 59520042 -89263430 - L1ME3A LINE L1 -219 6762 6236 1220 218 6 54 chr11 59520119 59520436 -89263036 - AluJb SINE Alu 0 302 1 344 293 45 10 chr11 59520534 59520732 -89262740 - L1ME3A LINE L1 -4345 2793 2589 789 227 20 0 chr11 59520767 59520917 -89262555 + MER58A DNA MER1_type 2 154 0 356 158 0 98 chr11 59520917 59520995 -89262477 + MLT1E2 LTR MaLR 95 164 -462 1797 255 77 33 chr11 59520998 59521851 -89261621 - L1ME3A LINE L1 -4457 2500 1568 2278 179 33 12 chr11 59521908 59522338 -89261134 - MLT1E2 LTR MaLR -50 576 138 936 221 42 50 chr11 59522551 59522908 -89260564 - L1MA9 LINE L1 -25 6287 5934 622 234 10 16 chr11 59522905 59523110 -89260362 + L1MB7 LINE L1 4676 4877 -1269 * 21 36 0 0 chr11 59523189 59523217 -89260255 + AT_rich Low_complexity Low_complexity 1 28 0 2272 112 0 0 chr11 59523227 59523530 -89259942 + AluSx SINE Alu 1 303 -9 466 251 183 0 chr11 59523927 59524102 -89259370 + MER5C DNA MER1_type 117 323 -1 1915 111 3 40 chr11 59524374 59524698 -89258774 - AluSx SINE Alu 0 312 1 242 259 108 0 chr11 59525194 59525333 -89258139 - L1ME LINE L1 -236 5885 5732 1182 183 48 4 chr11 59526026 59526294 -89257178 + L1MB7 LINE L1 4862 5141 -1005 244 176 14 27 chr11 59526314 59526388 -89257084 + GA-rich Low_complexity Low_complexity 2 74 0 267 274 48 12 chr11 59526473 59526557 -89256915 + MER5B DNA MER1_type 17 103 -75 914 61 0 0 chr11 59526560 59526675 -89256797 - L1P LINE L1 -3494 2652 2538 * 3125 22 25 0 chr11 59526669 59527072 -89256400 + L1P LINE L1 2661 3073 -3073 382 263 97 54 chr11 59527172 59527358 -89256114 + MIR SINE MIR 69 262 0 2380 90 0 0 chr11 59528595 59528896 -89254576 - AluSq SINE Alu -11 302 2 2891 13 0 0 chr11 59529974 59530288 -89253184 + AluYb8 SINE Alu 1 314 -4 3909 167 36 3 chr11 59530405 59531107 -89252365 + L1MB7 LINE L1 5384 6108 -76 3716 147 19 6 chr11 59531126 59531792 -89251680 - L1MA4 LINE L1 -7 6293 5619 1787 125 82 6 chr11 59531792 59531819 -89251653 + L1MB7 LINE L1 5160 5184 -1116 189 0 0 0 chr11 59531819 59531840 -89251632 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 1787 125 82 6 chr11 59531840 59532219 -89251253 + L1MB7 LINE L1 5184 5600 -700 234 143 0 0 chr11 59532229 59532271 -89251201 + L1MB7 LINE L1 6125 6166 -18 204 366 33 56 chr11 59532411 59532624 -89250848 - L2 LINE L2 -224 3048 2841 361 363 67 33 chr11 59533233 59533564 -89249908 - L2 LINE L2 -1223 2091 1750 324 266 64 37 chr11 59533657 59533766 -89249706 - L2 LINE L2 -3 3310 3199 2111 156 32 8 chr11 59534634 59535012 -89248460 - MER57A LTR ERV1 0 403 17 672 250 95 0 chr11 59535153 59535321 -89248151 - MER20 DNA MER1_type -32 187 4 1783 239 67 17 chr11 59535328 59535854 -89247618 + L2 LINE L2 1512 2063 -1251 291 293 12 0 chr11 59536032 59536114 -89247358 + L2 LINE L2 3231 3313 0 25 0 0 0 chr11 59537809 59537834 -89245638 + AT_rich Low_complexity Low_complexity 1 25 0 362 306 40 0 chr11 59538235 59538359 -89245113 - L2 LINE L2 -930 2384 2256 852 312 30 52 chr11 59538401 59538863 -89244609 + L1M3a LINE L1 1 452 -5503 10044 211 28 38 chr11 59539650 59541725 -89241747 + L1MA4 LINE L1 520 2533 -3795 6716 19 1 1 chr11 59541725 59542502 -89240970 + L1PA3 LINE L1 5376 6152 -3 10044 211 28 38 chr11 59542502 59544515 -89238957 + L1MA4 LINE L1 2533 4564 -1764 39396 72 11 8 chr11 59544524 59550649 -89232823 + L1PA6 LINE L1 11 6154 0 5988 160 17 5 chr11 59550636 59552543 -89230929 + L1MA4 LINE L1 4542 6476 -6 * 260 170 0 21 chr11 59553134 59553181 -89230291 + L1M3c LINE L1 958 1003 -6095 3283 156 28 3 chr11 59554035 59554601 -89228871 - LTR22 LTR ERVK 0 580 1 1067 277 40 16 chr11 59554725 59555314 -89228158 + L1M3c LINE L1 1681 2298 -4800 * 5471 149 30 19 chr11 59555309 59555783 -89227689 - L1P4 LINE L1 -521 5647 5180 1984 126 16 23 chr11 59555783 59556093 -89227379 - AluSg1 SINE Alu -1 308 1 5471 149 30 19 chr11 59556093 59556881 -89226591 - L1P4 LINE L1 -988 5180 4369 1544 161 0 4 chr11 59556881 59557135 -89226337 + AluJb SINE Alu 60 312 0 790 284 82 26 chr11 59557135 59557599 -89225873 + L1ME LINE L1 5267 5756 -406 2500 139 19 23 chr11 59557608 59558051 -89225421 - MER61C LTR ERV1 0 434 4 5659 127 49 17 chr11 59558053 59558555 -89224917 - MER61C-int LTR ERV1 -4 5213 4728 5330 83 112 0 chr11 59558555 59559298 -89224174 + LTR12 LTR ERV1 1 826 0 5659 127 49 17 chr11 59559298 59559739 -89223733 - MER61C-int LTR ERV1 -489 4728 4240 3185 128 8 11 chr11 59559736 59560424 -89223048 - MER61-int LTR ERV1 -3538 2006 1212 * 7546 115 19 67 chr11 59560424 59561174 -89222298 + Tigger1 DNA MER2_type 1116 1900 -518 2201 98 0 0 chr11 59561174 59561461 -89222011 - AluY SINE Alu -3 308 22 7546 115 19 67 chr11 59561461 59561960 -89221512 + Tigger1 DNA MER2_type 1900 2297 -121 2063 124 3 7 chr11 59561960 59562250 -89221222 - AluSx SINE Alu -23 289 1 7546 115 19 67 chr11 59562250 59562367 -89221105 + Tigger1 DNA MER2_type 2297 2418 0 23 33 0 0 chr11 59562367 59562397 -89221075 + AT_rich Low_complexity Low_complexity 1 30 0 1148 304 50 13 chr11 59562468 59562849 -89220623 + MLT1H1 LTR MaLR 1 395 -160 1461 114 0 0 chr11 59562866 59563076 -89220396 + L1PA13 LINE L1 5943 6152 -11 384 246 34 0 chr11 59563084 59563202 -89220270 + L1M4 LINE L1 4633 4754 -1392 309 282 8 34 chr11 59563204 59563321 -89220151 + MLT1H1 LTR MaLR 184 297 -258 5860 203 28 38 chr11 59563578 59566053 -89217419 + L1MB4 LINE L1 3737 6180 0 510 287 32 5 chr11 59566082 59566270 -89217202 + L1M4 LINE L1 5049 5241 -905 4235 31 6 2 chr11 59566601 59567120 -89216352 - L1PA4 LINE L1 0 6155 5635 1893 62 0 0 chr11 59567122 59567363 -89216109 + L1P LINE L1 4664 4904 -1242 5952 261 59 27 chr11 59567366 59568757 -89214715 + L1MD2 LINE L1 3030 4375 -1984 1831 136 0 7 chr11 59568757 59569029 -89214443 + AluSq SINE Alu 42 311 -2 5952 261 59 27 chr11 59569029 59570653 -89212819 + L1MD2 LINE L1 4375 6146 -213 329 296 25 6 chr11 59570651 59570810 -89212662 + L1MD3 LINE L1 7832 7993 -2 * 556 268 132 72 chr11 59572701 59572966 -89210506 - L2 LINE L2 -6 3307 3027 268 211 14 14 chr11 59572976 59573047 -89210425 - MLT1G LTR MaLR -10 580 510 2016 289 81 3 chr11 59573398 59574107 -89209365 - L2 LINE L2 -282 3031 2259 14481 176 10 7 chr11 59574115 59578069 -89205403 + L1PB1 LINE L1 2175 6144 -7 300 247 25 12 chr11 59578146 59578227 -89205245 - L2 LINE L2 -1099 2215 2134 1009 219 66 3 chr11 59578228 59578530 -89204942 + MER33 DNA MER1_type 3 323 -1 191 208 19 38 chr11 59578611 59578664 -89204808 - L2 LINE L2 -676 2638 2587 880 215 12 6 chr11 59578697 59578869 -89204603 - MSTD LTR MaLR 0 396 224 1476 92 0 0 chr11 59578869 59579054 -89204418 + AluY SINE Alu 1 185 -126 444 119 0 0 chr11 59579054 59579121 -89204351 + AluY SINE Alu 227 293 -16 6130 183 19 12 chr11 59579121 59580365 -89203107 + L1MA1 LINE L1 3185 4436 -1710 4053 123 16 5 chr11 59580359 59581361 -89202111 + L1MA1 LINE L1 4814 5831 -471 * 4078 173 2 0 chr11 59581361 59581992 -89201480 - L1PA15-16 LINE L1 -6215 634 3 270 331 41 25 chr11 59582045 59582166 -89201306 - MIR SINE MIR -112 150 28 1692 294 82 46 chr11 59583466 59584704 -89198768 + L1M4 LINE L1 16 1297 -5245 3644 229 67 23 chr11 59584787 59586409 -89197063 + L1M3e LINE L1 1144 2828 -4279 452 151 0 12 chr11 59586421 59586507 -89196965 + L1MA8 LINE L1 6015 6099 -192 3346 165 90 25 chr11 59586508 59587090 -89196382 + L1MCa LINE L1 886 1429 -4997 2200 121 90 58 chr11 59587090 59587503 -89195969 - MSTA LTR MaLR -2 426 1 3346 165 90 25 chr11 59587503 59588164 -89195308 + L1MCa LINE L1 1429 2304 -4122 1663 172 110 79 chr11 59588472 59588530 -89194942 - L1MB7 LINE L1 -9 6175 6120 2065 94 70 0 chr11 59588530 59588816 -89194656 - AluY SINE Alu -5 306 1 1663 172 110 79 chr11 59588816 59589239 -89194233 - L1MB7 LINE L1 -64 6120 5679 462 295 160 8 chr11 59589247 59589484 -89193988 + L2 LINE L2 3041 3313 0 200 316 0 26 chr11 59589763 59589839 -89193633 - MIR SINE MIR -87 175 102 2971 122 42 36 chr11 59591664 59591797 -89191675 - L1PA15 LINE L1 0 6165 6034 2121 125 0 3 chr11 59591797 59592093 -89191379 - AluSg SINE Alu -15 295 1 2971 122 42 36 chr11 59592093 59592461 -89191011 - L1PA15 LINE L1 -131 6034 5661 513 119 36 12 chr11 59592638 59592722 -89190750 - LTR13 LTR ERVK 0 1007 922 1651 128 5 15 chr11 59592889 59593343 -89190129 + L1PA13 LINE L1 5051 5498 -663 * 11945 27 1 0 chr11 59593335 59594760 -89188712 - L1PA3 LINE L1 -1581 4565 3139 7227 34 21 2 chr11 59594760 59596319 -89187153 + L1PA3 LINE L1 4580 6155 0 4706 99 8 0 chr11 59596325 59596993 -89186479 + L1PA13 LINE L1 5483 6155 -8 2027 211 83 38 chr11 59597572 59598206 -89185266 + L1ME1 LINE L1 5499 6331 -3 2246 122 0 0 chr11 59598357 59598652 -89184820 - AluSx SINE Alu -15 297 3 770 264 24 32 chr11 59598805 59599055 -89184417 - L1ME LINE L1 -429 5735 5488 7137 31 0 0 chr11 59599132 59599971 -89183501 - L1PA5 LINE L1 -1 6153 5315 1931 232 53 70 chr11 59599968 59600497 -89182975 - L1 LINE L1 -3846 2504 1968 * 881 29 0 0 chr11 59600497 59600601 -89182871 + L1PA3 LINE L1 6049 6152 -3 1931 232 53 70 chr11 59600601 59600908 -89182564 - L1 LINE L1 -4382 1968 1657 2325 107 3 0 chr11 59600908 59601216 -89182256 + AluSq SINE Alu 3 311 -2 1931 232 53 70 chr11 59601216 59601280 -89182192 - L1 LINE L1 -4693 1657 1593 207 0 0 0 chr11 59601280 59601303 -89182169 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1931 232 53 70 chr11 59601303 59601644 -89181828 - L1 LINE L1 -4757 1593 1305 1155 288 49 40 chr11 59601819 59602396 -89181076 - L1 LINE L1 -4749 601 156 * 1361 247 28 117 chr11 59602385 59602863 -89180609 - L1MEc LINE L1 -3325 2890 2468 319 93 0 0 chr11 59602863 59602906 -89180566 - U2 snRNA snRNA -145 43 1 1361 247 28 117 chr11 59602906 59603238 -89180234 - L1MEc LINE L1 -3747 2468 2108 212 143 86 19 chr11 59603340 59603445 -89180027 + (TA)n Simple_repeat Simple_repeat 2 113 0 611 6 38 82 chr11 59603495 59603678 -89179794 + (TA)n Simple_repeat Simple_repeat 2 176 0 214 326 70 31 chr11 59604053 59604182 -89179290 + L2 LINE L2 3179 3312 -1 21 0 0 0 chr11 59606709 59606730 -89176742 + AT_rich Low_complexity Low_complexity 1 21 0 423 291 59 23 chr11 59607950 59608170 -89175302 + L2 LINE L2 2210 2437 -877 229 327 19 19 chr11 59608353 59608457 -89175015 + L2 LINE L2 2808 2911 -361 362 39 19 0 chr11 59608833 59608885 -89174587 + (CA)n Simple_repeat Simple_repeat 2 54 0 1415 206 13 35 chr11 59609222 59609346 -89174126 + AluJo SINE Alu 2 127 -185 692 33 22 0 chr11 59609346 59609436 -89174036 + (TAAAA)n Simple_repeat Simple_repeat 5 96 0 1415 206 13 35 chr11 59609436 59609622 -89173850 + AluJo SINE Alu 127 305 -7 208 294 0 0 chr11 59611789 59611840 -89171632 - MER91A DNA MER1_type -8 188 138 219 353 8 16 chr11 59611912 59612034 -89171438 - MER91A DNA MER1_type -36 160 40 298 237 53 53 chr11 59612210 59612324 -89171148 - L2 LINE L2 0 3313 3200 1108 152 12 0 chr11 59612424 59612595 -89170877 + AluJb SINE Alu 128 300 -12 260 253 11 99 chr11 59612623 59612714 -89170758 - MER63 DNA MER1_type -1 1060 978 366 252 8 69 chr11 59612717 59612848 -89170624 - MER63 DNA MER1_type -312 750 2 1166 196 3 42 chr11 59612902 59613091 -89170381 + L1MB3 LINE L1 5908 6084 -99 2289 115 0 3 chr11 59613091 59613404 -89170068 - AluSx SINE Alu 0 312 1 1166 196 3 42 chr11 59613404 59613499 -89169973 + L1MB3 LINE L1 6084 6181 -2 2317 82 3 10 chr11 59613651 59613956 -89169516 - AluY SINE Alu -8 303 1 192 167 0 0 chr11 59614282 59614318 -89169154 + MIR SINE MIR 109 144 -64 3322 118 47 0 chr11 59614460 59614951 -89168521 - MER75 DNA T2_type 0 514 1 2429 84 0 0 chr11 59615292 59615591 -89167881 - AluY SINE Alu -12 299 1 448 275 102 18 chr11 59616156 59616323 -89167149 - MIR3 SINE MIR -9 199 19 319 184 23 11 chr11 59617644 59617731 -89165741 + GA-rich Low_complexity Low_complexity 1 88 0 186 128 0 0 chr11 59617801 59617840 -89165632 + (CA)n Simple_repeat Simple_repeat 2 40 0 252 189 0 38 chr11 59617840 59617869 -89165603 + GA-rich Low_complexity Low_complexity 3 31 -22 243 61 0 0 chr11 59617869 59617902 -89165570 + (CA)n Simple_repeat Simple_repeat 2 34 0 252 189 0 38 chr11 59617902 59617925 -89165547 + GA-rich Low_complexity Low_complexity 31 53 0 513 115 0 0 chr11 59617932 59618019 -89165453 + (CA)n Simple_repeat Simple_repeat 2 88 0 454 274 134 0 chr11 59618948 59619112 -89164360 + MIR SINE MIR 2 187 -75 3461 36 40 2 chr11 59619207 59619686 -89163786 + L1PA8 LINE L1 5720 6214 0 942 188 39 0 chr11 59619774 59619955 -89163517 + MER5A DNA MER1_type 1 188 -1 225 376 32 24 chr11 59620188 59620313 -89163159 - MIR3 SINE MIR -49 159 34 377 295 0 0 chr11 59620564 59620669 -89162803 - MIR SINE MIR -105 157 53 2429 58 3 3 chr11 59620923 59621215 -89162257 + AluY SINE Alu 13 304 -7 1944 193 83 23 chr11 59622690 59623125 -89160347 + MLT1C LTR MaLR 1 461 -6 1426 123 51 113 chr11 59623642 59623934 -89159538 - AluSq SINE Alu -19 294 21 181 291 101 0 chr11 59624191 59624270 -89159202 - L2 LINE L2 -508 2806 2720 1077 163 35 27 chr11 59624291 59624549 -89158923 - Charlie1 DNA MER1_type -8 2753 2494 844 246 36 78 chr11 59624558 59624915 -89158557 - MER39 LTR ERV1 -10 697 309 788 188 35 0 chr11 59624915 59625059 -89158413 - FRAM SINE Alu 0 176 28 840 161 92 0 chr11 59625203 59625377 -89158095 - Charlie1 DNA MER1_type -272 2489 2300 * 970 174 18 35 chr11 59625374 59625582 -89157890 - MER20 DNA MER1_type -5 214 1 459 167 48 0 chr11 59625583 59625666 -89157806 - Charlie1 DNA MER1_type -467 2294 2208 1801 160 20 13 chr11 59625666 59625966 -89157506 + MLT1A1 LTR MaLR 1 302 -63 475 248 9 9 chr11 59625976 59626089 -89157383 + MIR SINE MIR 21 133 -75 2903 132 7 0 chr11 59626164 59626595 -89156877 + MER57B LTR ERV1 1 434 0 183 217 130 43 chr11 59626673 59626742 -89156730 - L2 LINE L2 -5 3267 3193 585 168 9 19 chr11 59627293 59627400 -89156072 - MER5A DNA MER1_type 0 189 84 875 252 6 40 chr11 59627405 59627747 -89155725 + LTR28 LTR ERV1 310 1231 -147 * 2159 222 8 83 chr11 59627725 59628316 -89155156 + MER52A LTR ERV1 1209 1755 0 272 271 66 30 chr11 59628397 59628488 -89154984 + MIR3 SINE MIR 24 125 -83 1826 190 47 18 chr11 59628488 59628873 -89154599 - MSTD LTR MaLR 0 396 1 272 271 66 30 chr11 59628873 59628947 -89154525 + MIR3 SINE MIR 125 195 -13 189 336 47 23 chr11 59630493 59630621 -89152851 + L2 LINE L2 3180 3310 -3 216 297 42 25 chr11 59631381 59631499 -89151973 + MIR3 SINE MIR 3 122 -86 1988 90 4 0 chr11 59631917 59632173 -89151299 + LTR5 LTR ERVK 1 257 -712 2942 16 0 0 chr11 59632173 59632487 -89150985 + AluYb8 SINE Alu 1 314 -4 4687 120 37 13 chr11 59632513 59633211 -89150261 + LTR5 LTR ERVK 255 969 0 2088 125 7 7 chr11 59633583 59633886 -89149586 - AluSx SINE Alu -9 303 1 26 0 0 0 chr11 59634308 59634334 -89149138 + AT_rich Low_complexity Low_complexity 1 26 0 258 274 26 98 chr11 59634467 59634620 -89148852 - MIR3 SINE MIR -52 156 15 2505 274 147 31 chr11 59635155 59636756 -89146716 - L2 LINE L2 0 3313 1899 1418 179 41 25 chr11 59636756 59637074 -89146398 + MER33 DNA MER1_type 1 323 -1 889 206 81 10 chr11 59637083 59637292 -89146180 + MER58A DNA MER1_type 1 224 0 2505 274 147 31 chr11 59637292 59637356 -89146116 - L2 LINE L2 -1421 1892 1451 732 150 0 15 chr11 59637846 59637979 -89145493 - L1MB3 LINE L1 -7 6176 6046 362 301 70 7 chr11 59638059 59638202 -89145270 + MER103 DNA DNA 9 160 -6 2062 108 0 85 chr11 59638250 59638591 -89144881 + AluSx SINE Alu 1 312 0 237 33 0 0 chr11 59639064 59639094 -89144378 + (TC)n Simple_repeat Simple_repeat 1 30 0 354 274 123 24 chr11 59639591 59639803 -89143669 + MIR SINE MIR 30 262 0 869 181 31 26 chr11 59640203 59640396 -89143076 - L1MB8 LINE L1 0 6178 5985 325 256 28 144 chr11 59640421 59640636 -89142836 - MIR SINE MIR -70 192 3 246 179 54 0 chr11 59641446 59641502 -89141970 + GA-rich Low_complexity Low_complexity 6 64 0 597 72 0 0 chr11 59641502 59641585 -89141887 + (TG)n Simple_repeat Simple_repeat 1 83 0 283 222 28 14 chr11 59641646 59641718 -89141754 - Charlie4 DNA MER1_type -5 1956 1884 2508 90 0 0 chr11 59641977 59642288 -89141184 + AluSx SINE Alu 1 311 -1 1937 175 18 50 chr11 59642338 59642739 -89140733 + MLT1B LTR MaLR 1 388 -2 360 239 84 39 chr11 59643087 59643242 -89140230 - L1ME4a LINE L1 -6 6115 5954 632 259 53 9 chr11 59643270 59643498 -89139974 - L1ME4a LINE L1 -237 5884 5647 1036 142 0 79 chr11 59643499 59643689 -89139783 + MLT1C LTR MaLR 1 175 -292 2198 107 7 0 chr11 59643699 59643988 -89139484 + AluSg SINE Alu 1 291 -19 2028 147 15 9 chr11 59643989 59644316 -89139156 + MER47A DNA MER2_type 38 366 0 850 271 75 68 chr11 59644330 59644783 -89138689 - L1MC4a LINE L1 -1833 5975 5520 235 186 34 34 chr11 59645720 59645779 -89137693 - MIR3 SINE MIR -46 162 104 2395 82 0 7 chr11 59645831 59646134 -89137338 - AluSx SINE Alu -11 301 1 263 337 20 0 chr11 59646191 59646292 -89137180 - MIR3 SINE MIR -21 187 85 1727 164 55 3 chr11 59647502 59647795 -89135677 - AluJo SINE Alu -4 308 1 777 297 53 36 chr11 59647805 59648528 -89134944 - L1MC4a LINE L1 -813 5333 4599 459 135 122 0 chr11 59648811 59648885 -89134587 - FRAM SINE Alu -26 150 68 805 316 53 13 chr11 59648979 59649283 -89134189 + LTR16C LTR ERVL 149 464 -27 4979 215 61 60 chr11 59649283 59649926 -89133546 - L1MEc LINE L1 -2812 3403 2762 1884 112 0 4 chr11 59649926 59650176 -89133296 + AluSx SINE Alu 1 249 -63 4979 215 61 60 chr11 59650176 59650357 -89133115 - L1MEc LINE L1 -3453 2762 2583 1753 105 16 0 chr11 59650357 59650605 -89132867 - L1PA14 LINE L1 -17 6144 5893 4979 215 61 60 chr11 59650605 59651614 -89131858 - L1MEc LINE L1 -3632 2583 1577 1395 203 55 38 chr11 59651614 59651905 -89131567 - AluJo SINE Alu -16 296 1 4979 215 61 60 chr11 59651905 59652137 -89131335 - L1MEc LINE L1 -4638 1577 1347 750 115 0 18 chr11 59652137 59652250 -89131222 - AluSq/x SINE Alu -180 133 23 4979 215 61 60 chr11 59652250 59652714 -89130758 - L1MEc LINE L1 -4868 1347 756 1834 165 114 3 chr11 59652716 59653074 -89130398 + MSTA LTR MaLR 1 398 -30 1369 39 6 11 chr11 59653075 59653256 -89130216 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 333 169 28 0 chr11 59653256 59653327 -89130145 + CT-rich Low_complexity Low_complexity 4 180 0 1906 128 4 0 chr11 59653327 59653594 -89129878 - AluSx SINE Alu -8 304 38 302 140 0 4 chr11 59653599 59653650 -89129822 + MSTA LTR MaLR 377 428 0 1060 271 25 0 chr11 59653650 59653967 -89129505 - L1MEc LINE L1 -5458 758 434 396 326 85 68 chr11 59654372 59654608 -89128864 - L1 LINE L1 -6062 787 548 964 318 22 15 chr11 59654845 59655247 -89128225 - L1 LINE L1 -6402 447 43 2166 118 3 13 chr11 59655522 59655835 -89127637 - AluSx SINE Alu -2 310 1 415 341 59 28 chr11 59655881 59656271 -89127201 - L1MEc LINE L1 -5960 1069 668 315 214 162 7 chr11 59656347 59656501 -89126971 - MER20B DNA MER1_type -69 714 537 22 56 0 0 chr11 59657131 59657167 -89126305 + AT_rich Low_complexity Low_complexity 1 36 0 27 73 0 0 chr11 59657196 59657251 -89126221 + AT_rich Low_complexity Low_complexity 1 55 0 1398 170 57 133 chr11 59657917 59658244 -89125228 - MLT1C LTR MaLR 0 467 190 2251 112 0 3 chr11 59658244 59658540 -89124932 - AluSx SINE Alu -17 295 1 1398 170 57 133 chr11 59658540 59658717 -89124755 - MLT1C LTR MaLR -277 190 1 556 245 32 19 chr11 59658874 59659029 -89124443 - MIR SINE MIR -3 259 103 309 283 29 36 chr11 59660399 59660537 -89122935 + MLT1L LTR MaLR 142 278 -337 282 325 32 45 chr11 59660687 59660841 -89122631 + L2 LINE L2 2709 2860 -454 770 212 18 22 chr11 59661042 59661268 -89122204 - L1M4 LINE L1 -2259 3887 3663 * 5534 238 63 26 chr11 59661250 59661622 -89121850 - L1M4 LINE L1 -1004 5953 5596 2494 152 23 70 chr11 59661622 59662135 -89121337 + LTR2B LTR ERV1 2 490 0 5534 238 63 26 chr11 59662135 59662198 -89121274 - L1M4 LINE L1 -1361 5596 5537 3424 97 13 0 chr11 59662198 59662614 -89120858 + LTR46 LTR ERV1 1 425 -35 405 0 0 0 chr11 59662614 59662659 -89120813 + (TG)n Simple_repeat Simple_repeat 2 46 0 3424 97 13 0 chr11 59662659 59662696 -89120776 + LTR46 LTR ERV1 425 460 0 5534 238 63 26 chr11 59662696 59664328 -89119144 - L1M4 LINE L1 -1420 5537 3809 3225 242 43 71 chr11 59664356 59665970 -89117502 - L1M4 LINE L1 -4974 1881 1 1550 230 54 39 chr11 59666668 59666908 -89116564 - MLT1C LTR MaLR 0 467 232 1813 156 55 30 chr11 59666908 59667274 -89116198 + THE1C LTR MaLR 1 375 0 9997 117 10 38 chr11 59667276 59668900 -89114572 + THE1C-int LTR MaLR 3 1580 0 1921 132 58 25 chr11 59668900 59669263 -89114209 + THE1C LTR MaLR 1 375 0 1550 230 54 39 chr11 59669263 59669478 -89113994 - MLT1C LTR MaLR -234 233 1 1549 187 25 111 chr11 59669478 59669955 -89113517 - MLT1C-int LTR MaLR 0 1371 936 677 314 57 50 chr11 59670128 59670899 -89112573 - L1M4 LINE L1 -1091 5055 4212 27 62 0 0 chr11 59671089 59671137 -89112335 + AT_rich Low_complexity Low_complexity 1 48 0 22 56 0 0 chr11 59671575 59671611 -89111861 + AT_rich Low_complexity Low_complexity 1 36 0 4291 250 68 39 chr11 59671953 59674414 -89109058 + L1M4b LINE L1 4 2704 -4434 5327 239 51 9 chr11 59674605 59675218 -89108254 + L1M4b LINE L1 2586 3172 -3785 2385 71 0 0 chr11 59675218 59675512 -89107960 + AluY SINE Alu 1 294 -17 5327 239 51 9 chr11 59675512 59676856 -89106616 + L1M4b LINE L1 3172 4592 -2365 12390 136 42 13 chr11 59676861 59676976 -89106496 - Tigger1 DNA MER2_type 0 2418 2308 2387 75 0 3 chr11 59676976 59677270 -89106202 + AluY SINE Alu 1 293 -18 12390 136 42 13 chr11 59677270 59679325 -89104147 - Tigger1 DNA MER2_type -110 2308 185 238 114 0 0 chr11 59679325 59679360 -89104112 - Tigger1 DNA MER2_type -2190 228 194 * 1822 167 27 100 chr11 59679358 59679806 -89103666 - Tigger1 DNA MER2_type -2003 415 1 1148 231 56 16 chr11 59679807 59680184 -89103288 + L1M4b LINE L1 4597 4988 -1969 525 216 22 14 chr11 59680184 59680323 -89103149 - L1 LINE L1 -1185 4961 4822 3983 194 10 7 chr11 59680371 59680722 -89102750 - L1PA16 LINE L1 -10 6156 5808 510 70 0 0 chr11 59680722 59680793 -89102679 + (TA)n Simple_repeat Simple_repeat 2 72 0 3983 194 10 7 chr11 59680793 59681454 -89102018 - L1PA16 LINE L1 -358 5808 5105 2498 207 6 25 chr11 59681455 59682103 -89101369 - L1 LINE L1 -1185 4961 4326 1234 212 6 28 chr11 59682101 59682427 -89101045 + L1MB8 LINE L1 5805 6123 -55 * 2104 137 0 16 chr11 59682622 59682935 -89100537 + AluSx SINE Alu 5 312 0 427 302 40 0 chr11 59683061 59683210 -89100262 + L2 LINE L2 2083 2237 -1077 598 222 16 74 chr11 59683250 59683439 -89100033 + L2 LINE L2 3103 3280 -33 261 0 0 0 chr11 59683442 59683459 -89100013 + (CA)n Simple_repeat Simple_repeat 1 46 0 261 0 0 0 chr11 59683459 59683488 -89099984 + (CA)n Simple_repeat Simple_repeat 2 30 0 189 0 0 0 chr11 59683938 59683959 -89099513 + (A)n Simple_repeat Simple_repeat 1 21 0 1967 149 0 3 chr11 59684281 59684576 -89098896 - AluSx SINE Alu -18 294 1 889 164 72 48 chr11 59684576 59684784 -89098688 - MIR SINE MIR -36 226 14 1585 186 18 4 chr11 59685038 59685318 -89098154 + AluJo SINE Alu 1 284 -28 22 35 0 0 chr11 59685469 59685498 -89097974 + AT_rich Low_complexity Low_complexity 1 29 0 565 263 58 16 chr11 59686412 59686602 -89096870 + MIR SINE MIR 65 262 0 240 193 0 0 chr11 59688602 59688659 -89094813 - MLT2D LTR ERVL 0 520 464 602 131 24 90 chr11 59688706 59688950 -89094522 + MER4A LTR ERV1 149 421 -243 484 239 56 11 chr11 59688971 59689151 -89094321 + MER4C LTR ERV1 277 464 -1 1180 194 14 94 chr11 59689182 59689533 -89093939 - MLT2D LTR ERVL -91 323 1 5772 168 43 6 chr11 59689557 59691147 -89092325 - ERVL-D LTR ERVL -19 5745 4032 1624 91 0 0 chr11 59691147 59691344 -89092128 + AluSx SINE Alu 1 197 -115 5772 168 43 6 chr11 59691344 59691691 -89091781 - ERVL-D LTR ERVL -1732 4032 3699 1752 150 0 17 chr11 59691691 59691984 -89091488 - ERVL LTR ERVL -483 5281 4994 2332 229 36 49 chr11 59693039 59693137 -89090335 + L1 LINE L1 3301 3399 -4166 6945 52 14 3 chr11 59693137 59694082 -89089390 + L1PA6 LINE L1 5202 6154 0 2332 229 36 49 chr11 59694082 59694857 -89088615 + L1 LINE L1 3399 4155 -3410 1543 183 94 27 chr11 59694868 59695239 -89088233 - MSTD LTR MaLR 0 396 1 1688 183 116 5 chr11 59695244 59695615 -89087857 - MSTD-int LTR MaLR -5 1730 1319 3868 156 17 33 chr11 59695662 59695765 -89087707 + L1 LINE L1 5632 5735 -1830 2348 125 0 3 chr11 59695765 59696078 -89087394 + AluSx SINE Alu 1 312 0 3868 156 17 33 chr11 59696078 59696782 -89086690 + L1 LINE L1 5735 6426 -1139 1748 266 103 26 chr11 59696780 59697472 -89086000 - L1M4 LINE L1 -5797 745 1 * 200 280 0 0 chr11 59699450 59699500 -89083972 + MIR SINE MIR 102 151 -111 1736 268 107 37 chr11 59699611 59699836 -89083636 + L1MA10 LINE L1 493 701 -5440 2408 92 0 6 chr11 59699836 59700150 -89083322 + AluSx SINE Alu 1 312 0 1736 268 107 37 chr11 59700150 59700660 -89082812 + L1MA10 LINE L1 701 1280 -4861 * 3995 185 61 60 chr11 59700656 59701535 -89081937 + L1MA10 LINE L1 4471 5347 -1051 2296 166 5 23 chr11 59701535 59701963 -89081509 - L1PB4 LINE L1 -13 6143 5724 3995 185 61 60 chr11 59701963 59702378 -89081094 + L1PB4 LINE L1 5347 5760 -638 261 0 0 0 chr11 59702378 59702407 -89081065 + (TG)n Simple_repeat Simple_repeat 2 30 0 3995 185 61 60 chr11 59702407 59702614 -89080858 + L1MA10 LINE L1 5760 5965 -433 4460 115 13 6 chr11 59702614 59703309 -89080163 - L1PA16 LINE L1 -1 6165 5466 3995 185 61 60 chr11 59703309 59703716 -89079756 + L1MA10 LINE L1 5965 6395 -3 2443 54 0 0 chr11 59704452 59704749 -89078723 - AluY SINE Alu -14 297 1 405 200 0 0 chr11 59705107 59705187 -89078285 - MER116 DNA Mariner 0 80 1 1916 130 6 60 chr11 59705189 59705481 -89077991 + HSMAR2 DNA Mariner 1 273 -1029 1697 151 22 4 chr11 59705481 59705812 -89077660 + AluJb SINE Alu 1 336 0 1916 130 6 60 chr11 59705812 59705871 -89077601 + HSMAR2 DNA Mariner 273 334 -968 23 33 0 0 chr11 59705889 59705919 -89077553 + AT_rich Low_complexity Low_complexity 1 30 0 1397 144 13 28 chr11 59705919 59706278 -89077194 - L1PB3 LINE L1 -7 6147 5731 2837 86 91 9 chr11 59706278 59706697 -89076775 - MLT2A2 LTR ERVL 0 453 1 1397 144 13 28 chr11 59706697 59706975 -89076497 - L1PB3 LINE L1 -423 5731 5450 * 8861 224 42 33 chr11 59706974 59707615 -89075857 - L1M2b LINE L1 -1518 5690 5056 1549 131 3 107 chr11 59707615 59707943 -89075529 - AluSq SINE Alu -19 294 1 8861 224 42 33 chr11 59707943 59708686 -89074786 - L1M2b LINE L1 -2152 5056 4321 2433 31 0 59 chr11 59708686 59709009 -89074463 - AluY SINE Alu -7 304 1 8861 224 42 33 chr11 59709009 59709276 -89074196 - L1M2b LINE L1 -2887 4321 4058 2184 121 0 0 chr11 59709276 59709581 -89073891 - AluSx SINE Alu -7 305 1 8861 224 42 33 chr11 59709581 59710883 -89072589 - L1M2b LINE L1 -3150 4058 2769 1912 162 0 0 chr11 59710883 59711192 -89072280 - AluSx SINE Alu -3 309 1 8861 224 42 33 chr11 59711192 59712948 -89070524 - L1M2b LINE L1 -4439 2769 444 341 370 19 19 chr11 59713162 59713324 -89070148 - L1M2b LINE L1 -6674 535 374 1617 323 50 54 chr11 59713324 59714874 -89068598 - L1PBa LINE L1 -5419 1443 3 6676 121 18 3 chr11 59714888 59715861 -89067611 + HSMAR2 DNA Mariner 315 1301 -1 29 94 0 0 chr11 59716001 59716086 -89067386 + AT_rich Low_complexity Low_complexity 1 85 0 240 343 0 14 chr11 59717534 59717604 -89065868 - L2 LINE L2 -3 3269 3201 314 282 35 0 chr11 59718464 59718549 -89064923 + MER69 DNA AcHobo 1 88 -2438 633 310 63 6 chr11 59718557 59718905 -89064567 - L1M4 LINE L1 -1930 4216 3849 2442 236 76 18 chr11 59718948 59719635 -89063837 - L1ME3A LINE L1 -53 6117 5391 3628 170 55 8 chr11 59719697 59720167 -89063305 - L1MA9 LINE L1 -39 6273 5756 345 47 0 0 chr11 59720167 59720210 -89063262 + (TG)n Simple_repeat Simple_repeat 2 44 0 3628 170 55 8 chr11 59720210 59720464 -89063008 - L1MA9 LINE L1 -556 5756 5515 631 298 72 27 chr11 59720467 59721174 -89062298 - L1ME3A LINE L1 -748 5398 4618 2223 98 0 0 chr11 59721177 59721473 -89061999 - AluSc SINE Alu -13 296 1 332 164 123 27 chr11 59721481 59721554 -89061918 - L1MC2 LINE L1 -22 6322 6243 * 4447 207 33 18 chr11 59721551 59722713 -89060759 - L1PA12 LINE L1 -3732 3852 2629 6143 73 16 48 chr11 59722718 59723703 -89059769 - SVA Other Other 0 1386 433 1394 111 33 78 chr11 59723720 59724169 -89059303 - SVA Other Other -520 866 438 5516 86 29 16 chr11 59724180 59725037 -89058435 - SVA Other Other -518 868 1 355 351 0 15 chr11 59725877 59726008 -89057464 - LTR67 LTR ERVL -356 201 73 21 0 0 0 chr11 59726371 59726392 -89057080 + AT_rich Low_complexity Low_complexity 1 21 0 253 189 19 0 chr11 59726490 59726543 -89056929 + MLT1K LTR MaLR 517 570 -18 6210 112 29 24 chr11 59727170 59728111 -89055361 + LTR13 LTR ERVK 1 945 -62 2109 121 7 0 chr11 59728213 59728511 -89054961 - AluSg SINE Alu -10 300 1 210 213 0 21 chr11 59728797 59728844 -89054628 - MIR SINE MIR -103 159 114 780 255 54 20 chr11 59729697 59729901 -89053571 - MIR SINE MIR -51 211 1 1118 112 0 0 chr11 59731108 59731278 -89052194 + L1PA13 LINE L1 5994 6163 0 340 211 44 61 chr11 59731662 59731776 -89051696 - MIR SINE MIR -58 204 93 1184 301 86 10 chr11 59731936 59732342 -89051130 - LTR16C LTR ERVL -2 489 53 302 124 186 113 chr11 59733140 59733237 -89050235 - LTR16C LTR ERVL 0 491 388 * 937 245 21 0 chr11 59733210 59733402 -89050070 - LTR16C LTR ERVL -234 257 62 844 245 90 39 chr11 59733798 59734272 -89049200 - MLT1H LTR MaLR 0 549 12 736 238 140 43 chr11 59735699 59736098 -89047374 - MLT1H LTR MaLR -3 546 109 2404 205 68 6 chr11 59736984 59737720 -89045752 + L1MD2 LINE L1 5052 5834 -525 923 267 74 27 chr11 59737945 59738405 -89045067 - MER34B LTR ERV1 -59 506 1 493 208 85 15 chr11 59738405 59738535 -89044937 + L1MD2 LINE L1 5833 5971 -388 1907 121 10 27 chr11 59738556 59738854 -89044618 + AluSq SINE Alu 1 293 -20 336 175 0 0 chr11 59738857 59738920 -89044552 + GA-rich Low_complexity Low_complexity 2 64 0 456 192 70 58 chr11 59738920 59739076 -89044396 + L1MC5 LINE L1 6893 7050 -911 1204 244 127 22 chr11 59739327 59739737 -89043735 - MLT1H LTR MaLR -5 544 92 459 345 0 0 chr11 59739949 59740097 -89043375 + (CA)n Simple_repeat Simple_repeat 1 148 0 383 280 10 3 chr11 59740135 59740444 -89043028 + (CA)n Simple_repeat Simple_repeat 1 311 0 345 295 54 7 chr11 59740613 59740762 -89042710 + MIR3 SINE MIR 50 205 -3 240 322 35 0 chr11 59741464 59741551 -89041921 - MIR3 SINE MIR -25 183 94 482 226 48 68 chr11 59741909 59742055 -89041417 - MIR SINE MIR -118 144 2 439 148 23 34 chr11 59742269 59742357 -89041115 + MIR SINE MIR 90 176 -86 299 205 39 51 chr11 59742392 59742470 -89041002 - MIR SINE MIR -24 238 162 207 348 43 0 chr11 59743274 59743366 -89040106 + MIR SINE MIR 110 205 -57 2175 90 21 0 chr11 59744162 59744452 -89039020 - AluSg SINE Alu -14 296 1 318 341 26 2 chr11 59744730 59744863 -89038609 + MIR SINE MIR 32 165 -68 1360 159 31 128 chr11 59745067 59745456 -89038016 - MLT1A1 LTR MaLR -12 353 3 254 311 76 25 chr11 59745634 59745753 -89037719 + L2 LINE L2 3185 3309 -4 231 169 102 17 chr11 59745768 59745827 -89037645 + L2 LINE L2 3183 3246 -67 1042 271 107 10 chr11 59745845 59746155 -89037317 - MLT1I LTR MaLR 0 409 70 415 313 110 22 chr11 59746201 59746428 -89037044 + MIR SINE MIR 6 252 -10 2019 137 3 0 chr11 59746514 59746813 -89036659 + AluSx SINE Alu 1 300 -12 653 113 21 0 chr11 59747123 59747220 -89036252 - MSTD LTR MaLR -7 389 291 318 140 0 0 chr11 59747227 59747277 -89036195 - MIR SINE MIR -3 259 210 955 207 5 64 chr11 59747280 59747341 -89036131 + MER58A DNA MER1_type 3 66 -2354 1632 163 10 17 chr11 59747341 59747642 -89035830 - AluJb SINE Alu -11 301 3 955 207 5 64 chr11 59747642 59747783 -89035689 + MER58A DNA MER1_type 66 193 -31 466 114 0 0 chr11 59747784 59747854 -89035618 - Alu SINE Alu -5 305 236 403 247 120 7 chr11 59748283 59748433 -89035039 + MIR SINE MIR 17 183 -79 2052 71 30 0 chr11 59749145 59749413 -89034059 + AluY SINE Alu 1 276 -35 5067 82 42 10 chr11 59749519 59750295 -89033177 - SVA Other Other -539 847 47 246 32 0 0 chr11 59750304 59750335 -89033137 + (GGGAGA)n Simple_repeat Simple_repeat 1 31 0 1223 111 0 0 chr11 59750902 59751074 -89032398 + AluSg/x SINE Alu 126 297 -15 290 311 37 73 chr11 59751194 59751358 -89032114 + MIR3 SINE MIR 48 205 -3 2085 109 32 67 chr11 59751565 59751941 -89031531 + THE1B LTR MaLR 2 364 0 236 266 31 70 chr11 59751958 59752074 -89031398 + LTR33 LTR ERVL 1 113 -408 971 172 25 0 chr11 59752074 59752237 -89031235 - FAM SINE Alu -8 167 1 236 266 31 70 chr11 59752237 59752248 -89031224 + LTR33 LTR ERVL 113 123 -398 1074 128 17 0 chr11 59752952 59753124 -89030348 + AluSg/x SINE Alu 127 301 -9 229 281 24 0 chr11 59754924 59755006 -89028466 + (CA)n Simple_repeat Simple_repeat 2 85 0 320 172 0 0 chr11 59755274 59755332 -89028140 + MIR SINE MIR 61 118 -90 810 189 41 0 chr11 59755620 59755789 -89027683 - MER20B DNA MER1_type 0 219 44 2312 104 16 0 chr11 59756254 59756561 -89026911 - AluSx SINE Alu 0 312 1 276 327 127 27 chr11 59756916 59757066 -89026406 + MIR SINE MIR 20 184 -78 2182 130 0 7 chr11 59757066 59757365 -89026107 + AluSx SINE Alu 1 297 -15 529 246 228 0 chr11 59757488 59757659 -89025813 + MIR SINE MIR 50 259 -3 1066 224 55 63 chr11 59757781 59757872 -89025600 + MLT2C1 LTR ERVL 1 91 -306 2384 92 0 3 chr11 59757872 59758175 -89025297 + AluSg SINE Alu 1 302 -8 1066 224 55 63 chr11 59758175 59758481 -89024991 + MLT2C1 LTR ERVL 91 395 -2 298 320 78 7 chr11 59759211 59759364 -89024108 + MIR3 SINE MIR 34 197 -11 2347 102 0 6 chr11 59759538 59759853 -89023619 - AluSq SINE Alu 0 313 1 376 235 20 10 chr11 59759929 59760027 -89023445 - L1MB8 LINE L1 -63 6115 6017 553 168 44 223 chr11 59760027 59760145 -89023327 + MER113 DNA MER1_type? 106 243 -278 1850 88 0 0 chr11 59760145 59760372 -89023100 + AluY SINE Alu 84 310 -1 553 168 44 223 chr11 59760372 59760548 -89022924 + MER113 DNA MER1_type? 243 327 -194 2390 67 0 0 chr11 59760548 59760855 -89022617 + AluY SINE Alu 1 307 0 553 168 44 223 chr11 59760855 59760922 -89022550 + MER113 DNA MER1_type? 327 404 -117 436 270 58 7 chr11 59760975 59761112 -89022360 - MIR SINE MIR -54 208 65 661 266 130 22 chr11 59761928 59762353 -89021119 + L1MC4 LINE L1 7329 7910 -132 259 248 88 15 chr11 59762414 59762551 -89020921 + L1MC4 LINE L1 7896 8042 0 1742 171 17 17 chr11 59762596 59762889 -89020583 + AluJo SINE Alu 6 298 -14 2351 97 0 16 chr11 59762889 59763199 -89020273 + AluSg SINE Alu 1 305 -5 381 297 14 48 chr11 59763534 59763679 -89019793 - MIR3 SINE MIR -63 145 6 2304 104 3 0 chr11 59763702 59763999 -89019473 + AluSg SINE Alu 1 298 -12 2177 121 0 0 chr11 59764329 59764656 -89018816 + AluSx SINE Alu 1 327 0 415 255 125 47 chr11 59764880 59765072 -89018400 + MIR SINE MIR 46 252 -10 446 319 11 0 chr11 59765073 59765255 -89018217 - L2 LINE L2 -313 3000 2817 303 270 118 15 chr11 59765261 59765465 -89018007 - MER113 DNA MER1_type? -291 230 6 253 333 27 27 chr11 59765584 59765695 -89017777 - MIR3 SINE MIR -10 198 88 207 274 178 32 chr11 59766576 59766733 -89016739 + MIR3 SINE MIR 15 194 -14 480 277 45 40 chr11 59766883 59767020 -89016452 + MIR SINE MIR 60 200 -62 1669 206 121 28 chr11 59767020 59767482 -89015990 + MLT1D LTR MaLR 1 505 0 480 277 45 40 chr11 59767482 59767546 -89015926 + MIR SINE MIR 200 262 0 27 29 0 0 chr11 59767915 59767949 -89015523 + AT_rich Low_complexity Low_complexity 1 34 0 354 304 81 6 chr11 59768040 59768194 -89015278 + MIR SINE MIR 14 182 -80 2136 125 0 10 chr11 59768194 59768489 -89014983 + AluSx SINE Alu 1 292 -20 233 29 29 0 chr11 59768549 59768583 -89014889 + (TCCA)n Simple_repeat Simple_repeat 3 37 0 238 267 17 0 chr11 59769380 59769440 -89014032 + L2 LINE L2 3203 3263 -50 222 236 56 14 chr11 59769509 59769581 -89013891 - MIR3 SINE MIR -30 178 104 291 341 0 11 chr11 59769661 59769752 -89013720 + (TG)n Simple_repeat Simple_repeat 1 90 0 2193 94 0 63 chr11 59769799 59770118 -89013354 + AluSq SINE Alu 5 303 -10 365 319 29 7 chr11 59770345 59770483 -89012989 + MIR3 SINE MIR 23 163 -45 185 277 42 84 chr11 59772212 59772331 -89011141 + L2 LINE L2 1385 1498 -1816 184 227 242 0 chr11 59772942 59773008 -89010464 - L2 LINE L2 -2 3270 3189 820 253 80 8 chr11 59774996 59775233 -89008239 - MIR SINE MIR -8 254 1 383 244 50 17 chr11 59775859 59775978 -89007494 - MIR SINE MIR -119 143 21 254 364 52 19 chr11 59776352 59776506 -89006966 + L3 LINE CR1 1371 1529 -48 297 243 179 14 chr11 59776578 59776718 -89006754 - MER103 DNA DNA -1 165 3 270 0 0 0 chr11 59776724 59776754 -89006718 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2342 87 3 0 chr11 59776757 59777044 -89006428 - AluSp SINE Alu -25 288 1 236 156 67 0 chr11 59777210 59777255 -89006217 + L3 LINE CR1 1513 1560 -17 259 294 122 22 chr11 59777826 59778006 -89005466 + MIR SINE MIR 57 254 -8 384 119 0 0 chr11 59778567 59778626 -89004846 + (TG)n Simple_repeat Simple_repeat 1 59 0 249 185 185 0 chr11 59778884 59778965 -89004507 + MIR SINE MIR 35 130 -78 334 241 9 46 chr11 59779073 59779181 -89004291 + LTR16A1 LTR ERVL 7 110 -347 495 253 139 21 chr11 59779740 59779977 -89003495 - L1MC5 LINE L1 -37 7924 7660 1697 161 63 23 chr11 59780081 59780380 -89003092 + AluJo SINE Alu 1 311 -1 1847 161 12 26 chr11 59780406 59780748 -89002724 - MER1B DNA MER1_type 0 337 1 249 272 12 0 chr11 59780819 59780900 -89002572 - L1MC5 LINE L1 -323 7638 7557 938 227 58 4 chr11 59781662 59781887 -89001585 + MIR SINE MIR 3 239 -23 378 272 44 0 chr11 59782298 59782412 -89001060 - L2 LINE L2 0 3272 3154 1188 178 119 9 chr11 59782413 59782822 -89000650 + MLT1D LTR MaLR 1 503 -2 383 324 60 65 chr11 59783079 59783613 -88999859 - L2 LINE L2 -419 2895 2365 245 253 232 0 chr11 59783728 59783823 -88999649 + L2 LINE L2 3195 3311 -2 2157 241 43 14 chr11 59784196 59784707 -88998765 + MLT1E LTR MaLR 68 593 0 2774 227 80 20 chr11 59784755 59785528 -88997944 - L1ME3 LINE L1 -22 6140 5415 2011 143 0 14 chr11 59785528 59785855 -88997617 - AluSx SINE Alu 0 323 1 2774 227 80 20 chr11 59785855 59786685 -88996787 - L1ME3 LINE L1 -747 5415 4451 341 211 145 0 chr11 59787415 59787491 -88995981 - MER96 DNA MER1_type? -83 92 6 514 279 7 7 chr11 59787724 59787860 -88995612 + MIR SINE MIR 13 148 -114 232 269 26 26 chr11 59788470 59788548 -88994924 - MIR3 SINE MIR -24 184 107 362 267 17 17 chr11 59789314 59789430 -88994042 - L2 LINE L2 -5 3308 3193 2560 77 0 3 chr11 59789434 59789746 -88993726 - AluSq SINE Alu -2 311 1 1691 169 20 30 chr11 59790348 59790649 -88992823 - AluJo SINE Alu -14 298 1 180 0 0 0 chr11 59790803 59790823 -88992649 + (TGGGGG)n Simple_repeat Simple_repeat 6 25 0 259 239 65 0 chr11 59791012 59791104 -88992368 - MIR3 SINE MIR -107 101 4 417 260 81 0 chr11 59792224 59792347 -88991125 - L2 LINE L2 0 3272 3140 180 336 153 5 chr11 59792365 59792588 -88990884 + L2 LINE L2 2638 2893 -421 370 220 37 145 chr11 59793743 59793787 -88989685 - L2 LINE L2 -3 3310 3263 2052 125 0 3 chr11 59793787 59794075 -88989397 + AluSx SINE Alu 15 301 -11 370 220 37 145 chr11 59794075 59794158 -88989314 - L2 LINE L2 -50 3263 3213 2384 102 0 0 chr11 59794158 59794462 -88989010 - AluSg SINE Alu -6 304 1 370 220 37 145 chr11 59794462 59794547 -88988925 - L2 LINE L2 -100 3213 3120 604 289 83 45 chr11 59794911 59795247 -88988225 - L2 LINE L2 -723 2591 2243 238 300 0 0 chr11 59795256 59795316 -88988156 - MIR SINE MIR -67 141 82 331 320 27 47 chr11 59796085 59796235 -88987237 - MIR SINE MIR -93 169 23 2447 84 0 0 chr11 59796575 59796872 -88986600 - AluSx SINE Alu -15 297 1 230 266 16 0 chr11 59797955 59798019 -88985453 - L3 LINE CR1 -126 1451 1387 621 245 21 27 chr11 59798293 59798376 -88985096 - MIR SINE MIR -15 247 165 2224 112 0 0 chr11 59798376 59798685 -88984787 - AluSq SINE Alu 0 309 1 621 245 21 27 chr11 59798685 59798788 -88984684 - MIR SINE MIR -97 165 61 536 341 48 0 chr11 59799102 59799310 -88984162 + MIR SINE MIR 8 225 -37 648 264 27 88 chr11 59799492 59799854 -88983618 + MER57A LTR ERV1 48 383 -20 2311 113 0 0 chr11 59799854 59800155 -88983317 - AluSg SINE Alu -9 301 1 648 264 27 88 chr11 59800155 59800174 -88983298 + MER57A LTR ERV1 383 402 -1 422 329 142 19 chr11 59800289 59800707 -88982765 + L2 LINE L2 2779 3247 -66 381 307 29 22 chr11 59801201 59801338 -88982134 - MIR SINE MIR -124 138 1 322 273 11 0 chr11 59801385 59801473 -88981999 - MIR SINE MIR -90 118 30 609 364 24 26 chr11 59802354 59802854 -88980618 - HERVK22 LTR ERVK -316 6521 6023 294 281 62 82 chr11 59804010 59804398 -88979074 - HERVK22 LTR ERVK -2227 4610 4231 4013 191 29 59 chr11 59804678 59805676 -88977796 - LTR5 LTR ERVK -1 968 1 283 287 0 75 chr11 59805785 59805973 -88977499 - HERVK22 LTR ERVK -2962 3875 3702 377 264 36 36 chr11 59806330 59806497 -88976975 - HERVK22 LTR ERVK -5603 1234 1068 263 370 8 8 chr11 59806745 59806864 -88976608 - HERVK22 LTR ERVK -6016 821 703 26 0 0 0 chr11 59808150 59808176 -88975296 + AT_rich Low_complexity Low_complexity 1 26 0 2347 112 0 3 chr11 59808207 59808510 -88974962 - AluSx SINE Alu -10 302 1 389 240 0 0 chr11 59808512 59808587 -88974885 - Tigger7 DNA MER2_type -264 75 1 2157 138 0 0 chr11 59808708 59808999 -88974473 - AluSx SINE Alu -21 291 1 313 243 4 4 chr11 59809792 59809893 -88973579 + MIR SINE MIR 84 146 -62 606 283 60 0 chr11 59810627 59810793 -88972679 - MIR SINE MIR -74 188 13 1644 164 0 33 chr11 59811632 59811906 -88971566 - AluJo SINE Alu -14 298 34 617 209 0 22 chr11 59812034 59812168 -88971304 + FLAM_A SINE Alu 1 131 -2 1715 187 106 31 chr11 59812741 59813105 -88970367 + MLT1C LTR MaLR 3 405 -62 2091 113 58 0 chr11 59813105 59813397 -88970075 - AluSq SINE Alu -4 309 1 1715 187 106 31 chr11 59813397 59813455 -88970017 + MLT1C LTR MaLR 405 457 -10 753 171 0 38 chr11 59814036 59814194 -88969278 - LTR7 LTR ERV1 0 450 299 794 124 93 11 chr11 59814421 59814578 -88968894 - LTR7 LTR ERV1 -232 218 1 1177 85 0 0 chr11 59814696 59814837 -88968635 + AluSq/x SINE Alu 2 142 -170 363 267 105 52 chr11 59814867 59814963 -88968509 - MER5A DNA MER1_type 0 189 99 2304 92 0 23 chr11 59814963 59815297 -88968175 - AluSc SINE Alu 0 327 1 1271 173 9 146 chr11 59815301 59815643 -88967829 - AluSx SINE Alu -17 295 1 363 267 105 52 chr11 59815643 59815712 -88967760 - MER5A DNA MER1_type -92 97 9 376 295 24 0 chr11 59815714 59815829 -88967643 - MIR SINE MIR -61 147 44 234 306 88 14 chr11 59816455 59816602 -88966870 - MIR3 SINE MIR -18 190 33 209 224 61 0 chr11 59817913 59817962 -88965510 + MIR SINE MIR 95 146 -62 457 291 16 8 chr11 59818327 59818454 -88965018 - MIR SINE MIR -115 147 20 193 316 13 13 chr11 59818651 59818727 -88964745 - MIR SINE MIR -109 99 24 203 136 0 45 chr11 59818763 59818807 -88964665 + (CAAAAA)n Simple_repeat Simple_repeat 3 44 0 417 298 15 7 chr11 59819073 59819220 -88964252 + MER5A DNA MER1_type 3 161 -28 427 300 38 6 chr11 59819355 59819515 -88963957 + MIR SINE MIR 95 259 -3 546 244 81 35 chr11 59820092 59820289 -88963183 + MIR3 SINE MIR 2 207 -1 21 0 0 0 chr11 59820311 59820332 -88963140 + AT_rich Low_complexity Low_complexity 1 21 0 187 196 65 0 chr11 59820530 59820576 -88962896 + MIR SINE MIR 105 153 -55 743 141 8 31 chr11 59820743 59820871 -88962601 - FLAM_A SINE Alu -5 128 4 495 245 38 19 chr11 59821298 59821457 -88962015 + MIR3 SINE MIR 45 206 -2 516 210 6 57 chr11 59821467 59821624 -88961848 - L1M4 LINE L1 -3062 3084 2936 182 214 0 0 chr11 59821630 59821672 -88961800 - MIR SINE MIR -64 144 103 2908 28 0 6 chr11 59821962 59822282 -88961190 - SVA Other Other 0 1386 1069 1532 62 0 0 chr11 59822282 59822483 -88960989 + AluY SINE Alu 107 307 0 647 216 38 54 chr11 59823132 59823317 -88960155 + MIR SINE MIR 80 261 -1 346 213 59 24 chr11 59824001 59824131 -88959341 - MIR SINE MIR -50 158 20 22 0 0 0 chr11 59824733 59824755 -88958717 + AT_rich Low_complexity Low_complexity 1 22 0 347 233 36 35 chr11 59824756 59824870 -88958602 + MIR3 SINE MIR 15 128 -100 815 123 0 36 chr11 59826171 59826309 -88957163 + AluSg/x SINE Alu 160 292 -17 4896 118 67 30 chr11 59826330 59826349 -88957123 + Tigger3b DNA MER2_type 258 275 -2753 13899 125 37 17 chr11 59826349 59826465 -88957007 - Tigger1 DNA MER2_type 0 2418 2306 1653 133 141 0 chr11 59826465 59826720 -88956752 + AluJb SINE Alu 1 291 -21 13899 125 37 17 chr11 59826720 59828974 -88954498 - Tigger1 DNA MER2_type -112 2306 2 4896 118 67 30 chr11 59828974 59829176 -88954296 + Tigger3b DNA MER2_type 275 468 -2560 2261 109 50 6 chr11 59829176 59829535 -88953937 + THE1C LTR MaLR 1 375 0 4896 118 67 30 chr11 59829535 59830248 -88953224 + Tigger3b DNA MER2_type 468 1228 -3 433 193 93 71 chr11 59830254 59830394 -88953078 + LTR48 LTR ERV1 613 755 -32 227 235 59 78 chr11 59830407 59830509 -88952963 - MIR SINE MIR -155 107 8 200 186 47 81 chr11 59831493 59831579 -88951893 + L2 LINE L2 3189 3271 -1 21 36 0 0 chr11 59831587 59831615 -88951857 + AT_rich Low_complexity Low_complexity 1 28 0 458 210 100 0 chr11 59832388 59832488 -88950984 + MER3 DNA MER1_type 100 209 0 509 266 21 10 chr11 59834428 59834633 -88948839 - MIR SINE MIR -21 241 34 567 335 5 5 chr11 59834909 59835094 -88948378 - MIR SINE MIR -65 197 13 228 244 26 51 chr11 59835987 59836065 -88947407 - MIR SINE MIR -13 249 174 * 457 274 43 0 chr11 59836043 59836160 -88947312 - L2 LINE L2 0 3313 3192 209 170 21 0 chr11 59836887 59836934 -88946538 - L2 LINE L2 -2 3311 3264 3400 167 64 11 chr11 59837175 59837814 -88945658 - MER21B LTR ERV1 -127 736 64 24 0 0 0 chr11 59837834 59837858 -88945614 + AT_rich Low_complexity Low_complexity 1 24 0 234 245 106 32 chr11 59837864 59837958 -88945514 - MIR SINE MIR -11 251 151 406 306 31 42 chr11 59838376 59838569 -88944903 + MIR SINE MIR 20 210 -52 1904 110 11 11 chr11 59838702 59838965 -88944507 - AluSx SINE Alu -15 297 35 456 136 178 0 chr11 59838965 59839083 -88944389 + Tigger7 DNA MER2_type 2274 2412 -79 961 231 0 0 chr11 59839111 59839306 -88944166 + MIR SINE MIR 11 205 -57 736 184 0 0 chr11 59840496 59840621 -88942851 - FRAM SINE Alu -33 143 19 334 182 0 0 chr11 59841658 59841713 -88941759 + Tigger5 DNA MER2_type 1 55 -2268 * 402 151 14 14 chr11 59841682 59841755 -88941717 + Tigger5 DNA MER2_type 2251 2323 0 1611 236 65 80 chr11 59842046 59842442 -88941030 - MLT1G1 LTR MaLR -15 580 194 1400 173 79 29 chr11 59842442 59842571 -88940901 + AluJo SINE Alu 1 122 -190 189 0 0 0 chr11 59842571 59842592 -88940880 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1400 173 79 29 chr11 59842592 59842739 -88940733 + AluJo SINE Alu 122 291 -21 1611 236 65 80 chr11 59842739 59842931 -88940541 - MLT1G1 LTR MaLR -401 194 1 521 267 132 8 chr11 59843228 59843413 -88940059 + MIR SINE MIR 3 208 -54 361 323 46 31 chr11 59844407 59844602 -88938870 + MIR SINE MIR 6 203 -59 284 313 99 23 chr11 59844588 59844719 -88938753 + L2 LINE L2 3173 3313 0 * 419 259 106 29 chr11 59844807 59844881 -88938591 + MER5A DNA MER1_type 4 71 -118 2442 88 3 0 chr11 59844881 59845186 -88938286 + AluSx SINE Alu 3 308 -4 419 259 106 29 chr11 59845186 59845281 -88938191 + MER5A DNA MER1_type 71 186 -3 283 303 200 49 chr11 59845973 59846418 -88937054 + L3 LINE CR1 795 1306 -271 204 346 44 39 chr11 59846571 59846753 -88936719 + MIR SINE MIR 28 210 -52 198 269 19 0 chr11 59846805 59846857 -88936615 + MIR SINE MIR 206 258 -4 220 329 35 0 chr11 59847567 59847652 -88935820 + MIR SINE MIR 57 144 -118 830 216 4 79 chr11 59847662 59847770 -88935702 + MIR SINE MIR 17 101 -161 2216 122 0 10 chr11 59847770 59848074 -88935398 - AluSx SINE Alu -11 301 1 830 216 4 79 chr11 59848074 59848192 -88935280 + MIR SINE MIR 101 226 -36 667 264 88 32 chr11 59848213 59848463 -88935009 - LTR16C LTR ERVL 0 491 228 1865 138 36 20 chr11 59848490 59848794 -88934678 + AluJb SINE Alu 1 309 -3 201 195 70 117 chr11 59850212 59850340 -88933132 - MIR SINE MIR -69 139 18 314 326 0 0 chr11 59851918 59852004 -88931468 - MIR SINE MIR -60 202 117 200 286 0 0 chr11 59852151 59852200 -88931272 + L2 LINE L2 3264 3312 -1 211 317 146 0 chr11 59852354 59852477 -88930995 - MIR SINE MIR -24 238 98 553 297 92 53 chr11 59852936 59853347 -88930125 + L2 LINE L2 2848 3274 -39 318 314 51 7 chr11 59855504 59855641 -88927831 + MIR SINE MIR 1 143 -119 23 0 0 0 chr11 59856087 59856110 -88927362 + AT_rich Low_complexity Low_complexity 1 23 0 608 155 68 0 chr11 59856110 59856213 -88927259 - FLAM_C SINE Alu -25 118 9 279 324 135 0 chr11 59856783 59856931 -88926541 - MIR SINE MIR -72 190 23 252 241 120 113 chr11 59857557 59857690 -88925782 + MER94 DNA DNA 1 134 0 235 286 43 0 chr11 59858010 59858080 -88925392 - MIR SINE MIR -175 87 15 513 253 84 7 chr11 59859228 59859382 -88924090 + MIR3 SINE MIR 18 183 -25 230 316 61 10 chr11 59859498 59859596 -88923876 - MIR SINE MIR -113 149 47 271 272 107 29 chr11 59859758 59859861 -88923611 - MIR SINE MIR -53 155 45 2034 135 3 3 chr11 59859962 59860273 -88923199 + AluSx SINE Alu 1 311 -1 2094 150 27 19 chr11 59860276 59860643 -88922829 - MSTB LTR MaLR -56 370 1 288 307 70 9 chr11 59860684 59860798 -88922674 + L2 LINE L2 3124 3244 -28 582 275 87 14 chr11 59860815 59861022 -88922450 + MIR SINE MIR 30 251 -11 1064 177 120 79 chr11 59861030 59861156 -88922316 + AluJo SINE Alu 2 121 -191 2257 100 0 0 chr11 59861156 59861455 -88922017 + AluSx SINE Alu 6 304 -8 1064 177 120 79 chr11 59861455 59861594 -88921878 + AluJo SINE Alu 121 278 -34 267 93 0 0 chr11 59861594 59861637 -88921835 + (GA)n Simple_repeat Simple_repeat 1 43 0 438 275 84 22 chr11 59861666 59861844 -88921628 - L2 LINE L2 -8 3305 3117 1089 220 14 9 chr11 59861914 59862132 -88921340 - MER20 DNA MER1_type 0 219 1 1192 239 96 55 chr11 59862148 59862625 -88920847 + MLT1D LTR MaLR 9 505 0 1324 152 13 8 chr11 59862691 59862928 -88920544 - MER39B LTR ERV1 0 653 416 473 244 143 0 chr11 59864653 59864815 -88918657 - MIR SINE MIR -59 149 16 204 121 0 0 chr11 59864846 59864879 -88918593 - L2 LINE L2 -87 3226 3194 194 264 42 14 chr11 59865267 59865339 -88918133 - MIR3 SINE MIR -52 156 83 21 0 0 0 chr11 59865515 59865536 -88917936 + AT_rich Low_complexity Low_complexity 1 21 0 559 244 81 35 chr11 59865558 59865755 -88917717 - MIR3 SINE MIR -1 207 2 441 300 38 6 chr11 59866332 59866492 -88916980 - MIR SINE MIR -3 259 95 431 300 18 10 chr11 59866609 59866774 -88916698 - MER5A DNA MER1_type -10 168 3 203 136 0 45 chr11 59867040 59867084 -88916388 + (TTTTTG)n Simple_repeat Simple_repeat 3 44 0 200 316 13 13 chr11 59867120 59867196 -88916276 + MIR SINE MIR 24 99 -109 465 299 14 14 chr11 59867376 59867520 -88915952 + MIR SINE MIR 4 147 -115 188 204 68 0 chr11 59867895 59867939 -88915533 - MIR SINE MIR -67 141 95 276 99 0 5 chr11 59868156 59868308 -88915164 + AluSc SINE Alu 63 290 -9 714 303 78 48 chr11 59868794 59869270 -88914202 - MER113 DNA MER1_type? -16 505 16 193 357 43 24 chr11 59871534 59871744 -88911728 - L2 LINE L2 -217 3055 2842 * 196 309 179 0 chr11 59871733 59871817 -88911655 + L2 LINE L2 3168 3266 -6 435 220 99 28 chr11 59872408 59872549 -88910923 + L1MEd LINE L1 7 157 -5962 1178 175 0 5 chr11 59872554 59872748 -88910724 + AluJb SINE Alu 87 279 -33 772 281 128 68 chr11 59873140 59873600 -88909872 + L1MEd LINE L1 544 975 -5154 1672 164 8 0 chr11 59873600 59873868 -88909604 + AluSx SINE Alu 30 299 -13 772 281 128 68 chr11 59873868 59874499 -88908973 + L1MEd LINE L1 975 1691 -4438 2133 127 0 6 chr11 59874563 59874877 -88908595 + AluSx SINE Alu 1 312 0 593 299 86 21 chr11 59875586 59875820 -88907652 - MIR SINE MIR 0 262 14 455 271 109 16 chr11 59876125 59876317 -88907155 - L2 LINE L2 -50 3263 3054 464 312 23 23 chr11 59876333 59876506 -88906966 - LTR16C LTR ERVL -14 477 305 657 311 68 15 chr11 59876675 59877021 -88906451 - ERVL LTR ERVL -1780 3984 3583 2039 118 0 29 chr11 59877021 59877334 -88906138 + AluSg1 SINE Alu 1 304 -5 657 311 68 15 chr11 59877334 59877402 -88906070 - ERVL LTR ERVL -2181 3583 3520 1291 345 46 9 chr11 59877484 59878026 -88905446 - ERVL LTR ERVL -2366 3398 2837 5004 166 56 98 chr11 59878029 59878128 -88905344 - Charlie1a DNA MER1_type -1306 1455 1353 2240 99 30 58 chr11 59878128 59878457 -88905015 + L1MA3 LINE L1 5922 6240 -65 2129 112 6 16 chr11 59878457 59878769 -88904703 + AluSx SINE Alu 1 309 -3 2240 99 30 58 chr11 59878769 59878834 -88904638 + L1MA3 LINE L1 6240 6305 0 5004 166 56 98 chr11 59878834 59878982 -88904490 - Charlie1a DNA MER1_type -1408 1353 1200 2039 124 0 0 chr11 59878982 59879280 -88904192 + AluSx SINE Alu 1 298 -14 5004 166 56 98 chr11 59879280 59880354 -88903118 - Charlie1a DNA MER1_type -1561 1200 201 2006 146 7 0 chr11 59880354 59880663 -88902809 - AluSx SINE Alu -1 311 1 5004 166 56 98 chr11 59880663 59880851 -88902621 - Charlie1a DNA MER1_type -2560 201 7 192 319 56 14 chr11 59881009 59881081 -88902391 - L3 LINE CR1 -468 1109 1035 251 310 151 39 chr11 59881239 59881497 -88901975 - L3 LINE CR1 -629 948 662 2106 132 24 32 chr11 59881506 59881884 -88901588 + MER39B LTR ERV1 1 375 -278 1370 158 19 68 chr11 59881944 59882372 -88901100 + MER39B LTR ERV1 319 653 0 1192 239 96 55 chr11 59882438 59882915 -88900557 - MLT1D LTR MaLR 0 505 9 1089 220 14 9 chr11 59882931 59883149 -88900323 + MER20 DNA MER1_type 1 219 0 438 275 84 22 chr11 59883219 59883397 -88900075 + L2 LINE L2 3117 3305 -8 267 93 0 0 chr11 59883426 59883469 -88900003 + (TC)n Simple_repeat Simple_repeat 1 43 0 1064 177 120 79 chr11 59883469 59883608 -88899864 - AluJo SINE Alu -34 278 146 2272 97 0 0 chr11 59883608 59883907 -88899565 - AluSx SINE Alu -8 304 6 1064 177 120 79 chr11 59883907 59884033 -88899439 - AluJo SINE Alu -166 146 2 570 275 87 14 chr11 59884041 59884248 -88899224 - MIR SINE MIR -11 251 30 465 331 159 8 chr11 59884265 59884420 -88899052 - L2 LINE L2 -28 3244 3114 2407 140 25 65 chr11 59884420 59884790 -88898682 + MSTB LTR MaLR 1 352 -74 2214 123 0 0 chr11 59884790 59885099 -88898373 - AluSg SINE Alu 0 310 2 2407 140 25 65 chr11 59885099 59885172 -88898300 + MSTB LTR MaLR 352 426 0 465 331 159 8 chr11 59885172 59885388 -88898084 - L2 LINE L2 -158 3114 2817 410 225 0 101 chr11 59887046 59887131 -88896341 - Charlie8 DNA MER1_type -2233 184 117 2239 87 3 0 chr11 59887131 59887429 -88896043 - AluSp SINE Alu -14 299 1 410 225 0 101 chr11 59887429 59887481 -88895991 - Charlie8 DNA MER1_type -2300 117 61 2156 107 0 22 chr11 59887495 59887813 -88895659 + AluSx SINE Alu 1 311 -1 2246 109 0 3 chr11 59888164 59888475 -88894997 + AluSx SINE Alu 1 310 -2 2030 128 0 16 chr11 59888922 59889228 -88894244 + AluSg SINE Alu 10 310 0 972 272 139 24 chr11 59889362 59889814 -88893658 - L2 LINE L2 0 3313 2810 192 253 114 25 chr11 59890086 59890165 -88893307 + MIR3 SINE MIR 109 194 -14 350 295 3 53 chr11 59890689 59890981 -88892491 + G-rich Low_complexity Low_complexity 1 277 0 26 109 0 0 chr11 59891094 59891204 -88892268 + GC_rich Low_complexity Low_complexity 1 110 0 217 281 31 0 chr11 59891716 59891780 -88891692 + MIR SINE MIR 84 149 -59 1973 100 29 36 chr11 59891827 59892136 -88891336 - AluSx SINE Alu -4 308 2 533 231 126 15 chr11 59892145 59892344 -88891128 - MIR SINE MIR -14 248 28 180 246 33 16 chr11 59892432 59892493 -88890979 + MIR SINE MIR 38 99 -163 249 254 0 0 chr11 59892565 59892624 -88890848 + L2 LINE L2 3255 3313 0 1295 53 12 0 chr11 59893086 59893257 -88890215 + (TTTC)n Simple_repeat Simple_repeat 4 176 0 192 152 0 0 chr11 59893257 59893290 -88890182 + CT-rich Low_complexity Low_complexity 1 33 0 1990 113 13 10 chr11 59893291 59893600 -88889872 - AluSx SINE Alu -2 310 1 293 229 29 14 chr11 59894727 59894797 -88888675 + MER5A DNA MER1_type 63 133 -56 2379 58 7 0 chr11 59895175 59895469 -88888003 + AluY SINE Alu 1 296 -15 257 173 19 19 chr11 59895656 59895708 -88887764 - L2 LINE L2 0 3272 3221 1747 158 33 3 chr11 59896361 59896664 -88886808 + AluJb SINE Alu 1 312 0 974 253 76 66 chr11 59897148 59897662 -88885810 - MLT1G1 LTR MaLR -1 594 76 241 326 11 0 chr11 59898282 59898374 -88885098 + (ATGGTG)n Simple_repeat Simple_repeat 5 97 0 2102 125 0 3 chr11 59898473 59898778 -88884694 - AluSx SINE Alu -8 304 1 365 185 141 22 chr11 59899245 59899337 -88884135 + MIR3 SINE MIR 90 192 -16 188 281 0 0 chr11 59899351 59899408 -88884064 - MIR SINE MIR -134 128 72 391 240 114 97 chr11 59899442 59899617 -88883855 + MER5B DNA MER1_type 1 178 0 327 25 0 0 chr11 59899659 59899699 -88883773 + (TG)n Simple_repeat Simple_repeat 1 40 0 518 271 159 6 chr11 59901011 59901181 -88882291 - MER117 DNA MER1_type 0 197 2 339 279 121 14 chr11 59901184 59901324 -88882148 - MIR3 SINE MIR -51 157 3 321 250 40 57 chr11 59901657 59901781 -88881691 - MIR3 SINE MIR -25 183 62 181 231 185 0 chr11 59902008 59902073 -88881399 + MIR SINE MIR 72 148 -114 253 241 12 24 chr11 59902127 59902210 -88881262 + MIR SINE MIR 169 250 -12 466 250 169 12 chr11 59902287 59902447 -88881025 - MIR SINE MIR -66 196 12 353 222 12 25 chr11 59902580 59902661 -88880811 + MIR SINE MIR 31 110 -152 204 322 0 46 chr11 59903292 59903379 -88880093 - L2 LINE L2 -2 3270 3188 239 317 110 42 chr11 59903844 59904318 -88879154 - L2 LINE L2 -256 3016 2459 212 305 214 15 chr11 59904876 59905007 -88878465 + MIR3 SINE MIR 37 193 -15 231 36 0 0 chr11 59906297 59906325 -88877147 + (TCC)n Simple_repeat Simple_repeat 1 28 0 281 167 0 17 chr11 59907019 59907079 -88876393 - L3 LINE CR1 -106 1471 1413 2056 140 10 3 chr11 59909155 59909463 -88874009 + AluJb SINE Alu 1 310 -2 24 0 0 0 chr11 59909982 59910006 -88873466 + AT_rich Low_complexity Low_complexity 1 24 0 496 285 89 0 chr11 59910095 59910253 -88873219 - MIR SINE MIR -74 188 17 600 239 22 0 chr11 59911022 59911160 -88872312 - MIR SINE MIR -109 153 13 548 280 71 38 chr11 59911362 59911573 -88871899 - MIR SINE MIR -29 233 16 191 245 0 0 chr11 59911763 59911812 -88871660 + L2 LINE L2 3224 3272 0 230 302 145 34 chr11 59912416 59912595 -88870877 + L2 LINE L2 2852 3050 -222 491 218 32 16 chr11 59914462 59914586 -88868886 - MIR SINE MIR -55 207 82 218 171 0 0 chr11 59915083 59915124 -88868348 + MIR SINE MIR 106 146 -116 316 185 222 0 chr11 59915564 59915645 -88867827 - MIR SINE MIR -113 149 51 600 313 33 14 chr11 59916146 59916360 -88867112 - MIR SINE MIR 0 262 45 25 31 0 0 chr11 59917858 59917890 -88865582 + GC_rich Low_complexity Low_complexity 1 32 0 216 0 0 0 chr11 59918113 59918137 -88865335 + (CCG)n Simple_repeat Simple_repeat 2 25 0 453 285 110 11 chr11 59920981 59921177 -88862295 + MIR SINE MIR 27 244 -18 1881 142 33 0 chr11 59921218 59921492 -88861980 - AluJb SINE Alu -29 283 1 309 299 45 38 chr11 59923470 59923627 -88859845 - MIR SINE MIR -71 191 34 632 199 60 0 chr11 59923656 59923822 -88859650 - MER5B DNA MER1_type -2 176 1 1462 217 49 14 chr11 59924043 59924388 -88859084 + MSTD LTR MaLR 40 396 0 367 157 121 12 chr11 59924475 59924558 -88858914 - MIR SINE MIR -70 192 101 1908 132 17 27 chr11 59924675 59924970 -88858502 + AluJo SINE Alu 1 292 -20 475 244 143 0 chr11 59926361 59926523 -88856949 - MIR SINE MIR -59 149 16 201 121 0 0 chr11 59926554 59926587 -88856885 - L2 LINE L2 -87 3226 3194 404 295 51 13 chr11 59927035 59927191 -88856281 + MER5B DNA MER1_type 1 162 -16 266 273 65 50 chr11 59927248 59927387 -88856085 + MIR SINE MIR 47 187 -75 1458 192 121 147 chr11 59929037 59929996 -88853476 + LTR1B LTR ERV1 3 1020 0 22 0 0 0 chr11 59930179 59930201 -88853271 + AT_rich Low_complexity Low_complexity 1 22 0 1845 138 20 23 chr11 59930801 59931105 -88852367 + AluSx SINE Alu 1 303 -9 270 299 26 43 chr11 59931462 59931579 -88851893 + L2 LINE L2 3199 3313 0 450 298 117 55 chr11 59931827 59932246 -88851226 - L2 LINE L2 -2 3311 2867 317 133 0 0 chr11 59932356 59932401 -88851071 + MER39 LTR ERV1 2 46 -661 3092 132 21 13 chr11 59932401 59932574 -88850898 - LTR45 LTR ERV1 0 525 355 2200 96 59 31 chr11 59932574 59932928 -88850544 + THE1B LTR MaLR 1 364 0 3092 132 21 13 chr11 59932928 59933275 -88850197 - LTR45 LTR ERV1 -170 355 1 3504 142 64 44 chr11 59933275 59934007 -88849465 + LTR48 LTR ERV1 40 786 -1 837 288 22 32 chr11 59934007 59934320 -88849152 + L2 LINE L2 3003 3312 -1 277 304 30 30 chr11 59934326 59934461 -88849011 - L2 LINE L2 -584 2730 2596 561 225 101 45 chr11 59934476 59934654 -88848818 - MIR SINE MIR -73 189 2 927 147 83 34 chr11 59934934 59935070 -88848402 + LTR54 LTR ERV1 5 133 -377 393 22 0 0 chr11 59935070 59935116 -88848356 + (TG)n Simple_repeat Simple_repeat 2 47 0 927 147 83 34 chr11 59935116 59935343 -88848129 + LTR54 LTR ERV1 133 446 -64 916 129 0 82 chr11 59935349 59935519 -88847953 + FAM SINE Alu 17 172 -13 240 79 0 0 chr11 59935519 59935557 -88847915 + LTR54 LTR ERV1 473 510 0 235 288 0 15 chr11 59935764 59935830 -88847642 + MER5A DNA MER1_type 122 186 -3 378 319 94 6 chr11 59936577 59936737 -88846735 + MIR3 SINE MIR 34 207 -1 230 306 28 0 chr11 59936731 59936803 -88846669 - MIR SINE MIR -104 104 31 * 429 305 77 34 chr11 59936821 59937054 -88846418 - MIR SINE MIR 0 262 20 234 245 106 32 chr11 59937472 59937566 -88845906 + MIR SINE MIR 151 251 -11 24 0 0 0 chr11 59937572 59937596 -88845876 + AT_rich Low_complexity Low_complexity 1 24 0 3400 167 64 11 chr11 59937616 59938255 -88845217 + MER21B LTR ERV1 64 736 -127 209 170 21 0 chr11 59938496 59938543 -88844929 + L2 LINE L2 3264 3311 -2 457 274 43 0 chr11 59939270 59939387 -88844085 + L2 LINE L2 3192 3313 0 228 244 26 51 chr11 59939365 59939443 -88844029 + MIR SINE MIR 174 249 -13 * 567 335 5 5 chr11 59940335 59940520 -88842952 + MIR SINE MIR 13 197 -65 509 266 21 10 chr11 59940796 59941001 -88842471 + MIR SINE MIR 34 241 -21 458 210 100 0 chr11 59942941 59943041 -88840431 - MER3 DNA MER1_type 0 209 100 21 36 0 0 chr11 59943814 59943842 -88839630 + AT_rich Low_complexity Low_complexity 1 28 0 200 186 47 81 chr11 59943850 59943936 -88839536 - L2 LINE L2 -1 3271 3189 227 235 59 78 chr11 59944920 59945022 -88838450 + MIR SINE MIR 8 107 -155 433 193 93 71 chr11 59945035 59945175 -88838297 - LTR48 LTR ERV1 -32 755 613 5883 129 89 29 chr11 59945181 59945894 -88837578 - Tigger3b DNA MER2_type -1800 1228 559 2261 109 50 6 chr11 59945894 59946253 -88837219 - THE1C LTR MaLR 0 375 1 5883 129 89 29 chr11 59946253 59946455 -88837017 - Tigger3b DNA MER2_type -2469 559 370 13899 125 37 17 chr11 59946455 59948709 -88834763 + Tigger1 DNA MER2_type 2 2306 -112 1653 133 141 0 chr11 59948709 59948964 -88834508 - AluJb SINE Alu -21 291 1 13899 125 37 17 chr11 59948964 59949080 -88834392 + Tigger1 DNA MER2_type 2306 2418 0 5883 129 89 29 chr11 59949080 59949120 -88834352 - Tigger3b DNA MER2_type -2658 370 334 2266 91 0 46 chr11 59949120 59949427 -88834045 - AluSg SINE Alu -17 293 1 5883 129 89 29 chr11 59949427 59949627 -88833845 - Tigger3b DNA MER2_type -2694 334 2 495 169 414 41 chr11 59949723 59950013 -88833459 - LTR48 LTR ERV1 -389 398 1 395 233 0 0 chr11 59950090 59950163 -88833309 - Tigger5 DNA MER2_type 0 2323 2251 293 148 19 19 chr11 59950133 59950187 -88833285 - Tigger5 DNA MER2_type -2269 54 1 * 267 325 0 0 chr11 59950437 59950514 -88832958 + MIR SINE MIR 72 148 -114 342 262 75 43 chr11 59952613 59952800 -88830672 - L2 LINE L2 -1407 1907 1715 230 284 74 0 chr11 59952872 59952967 -88830505 - MER103 DNA DNA -22 144 43 2230 124 0 0 chr11 59953027 59953326 -88830146 + AluSg SINE Alu 1 299 -11 527 111 0 0 chr11 59953463 59953544 -88829928 - AluS SINE Alu -231 82 2 2317 97 0 10 chr11 59953577 59953875 -88829597 + AluSc SINE Alu 1 295 -14 692 295 76 2 chr11 59953947 59954189 -88829283 + MIR SINE MIR 4 260 -2 301 326 135 0 chr11 59954961 59955102 -88828370 - MIR SINE MIR -80 182 23 432 228 201 0 chr11 59955154 59955303 -88828169 + MIR SINE MIR 7 185 -77 29 28 0 0 chr11 59955303 59955339 -88828133 + AT_rich Low_complexity Low_complexity 1 36 0 22245 58 5 4 chr11 59955420 59957593 -88825879 - L1PA5 LINE L1 -1 6153 3984 2584 74 0 0 chr11 59957593 59957904 -88825568 + AluY SINE Alu 1 311 0 22245 58 5 4 chr11 59957904 59961306 -88822166 - L1PA5 LINE L1 -2170 3984 578 322 275 72 113 chr11 59961942 59962251 -88821221 - L1ME3A LINE L1 -50 6095 5800 765 256 113 18 chr11 59962715 59963292 -88820180 - L1ME3A LINE L1 -353 5800 5156 279 240 67 80 chr11 59963262 59963412 -88820060 - L1ME3A LINE L1 -5391 728 581 * 301 344 109 52 chr11 59963532 59963974 -88819498 - L1ME3A LINE L1 -5649 470 4 596 240 59 44 chr11 59965793 59965997 -88817475 - MIR SINE MIR 0 262 56 318 314 51 7 chr11 59969831 59969968 -88813504 + MIR SINE MIR 1 143 -119 23 0 0 0 chr11 59970414 59970437 -88813035 + AT_rich Low_complexity Low_complexity 1 23 0 608 155 68 0 chr11 59970437 59970540 -88812932 - FLAM_C SINE Alu -25 118 9 258 324 135 0 chr11 59971110 59971258 -88812214 - MIR SINE MIR -72 190 23 238 233 120 113 chr11 59971884 59972017 -88811455 + MER94 DNA DNA 1 134 0 245 304 38 0 chr11 59972330 59972409 -88811063 - MIR SINE MIR -166 96 15 491 226 98 0 chr11 59973578 59973711 -88809761 + MIR3 SINE MIR 38 183 -25 221 316 61 10 chr11 59973827 59973925 -88809547 - MIR SINE MIR -113 149 47 263 272 107 29 chr11 59974087 59974190 -88809282 - MIR SINE MIR -53 155 45 269 286 156 71 chr11 59974232 59974291 -88809181 + MER5A DNA MER1_type 17 70 -119 2163 111 9 32 chr11 59974291 59974606 -88808866 + AluSx SINE Alu 1 308 -4 269 286 156 71 chr11 59974606 59974700 -88808772 + MER5A DNA MER1_type 70 183 -6 1058 133 100 21 chr11 59975700 59975940 -88807532 + L1MC3 LINE L1 7514 7772 -13 3815 129 16 44 chr11 59976221 59976505 -88806967 + L1PA13 LINE L1 5499 5789 -374 2572 78 0 3 chr11 59976505 59976814 -88806658 + AluSc SINE Alu 2 309 0 3815 129 16 44 chr11 59976814 59977213 -88806259 + L1PA13 LINE L1 5789 6163 0 260 347 48 14 chr11 59977217 59977364 -88806108 + MIR SINE MIR 51 202 -60 2328 205 125 90 chr11 59977773 59978109 -88805363 - L1MC4 LINE L1 0 8042 7719 3689 101 43 2 chr11 59978109 59978666 -88804806 - LTR19B LTR ERV1 0 580 1 2328 205 125 90 chr11 59978666 59978939 -88804533 - L1MC4 LINE L1 -323 7719 7457 1581 153 31 107 chr11 59978939 59979183 -88804289 - MLT1B LTR MaLR 0 390 190 2194 122 0 7 chr11 59979183 59979478 -88803994 + AluSx SINE Alu 6 298 -14 1581 153 31 107 chr11 59979478 59979652 -88803820 - MLT1B LTR MaLR -200 190 4 2328 205 125 90 chr11 59979652 59979954 -88803518 - L1MC4 LINE L1 -585 7457 7098 769 263 29 0 chr11 59980363 59980572 -88802900 + MIR SINE MIR 46 260 -2 899 104 0 22 chr11 59980660 59980794 -88802678 - FLAM_C SINE Alu -2 131 1 2593 65 3 0 chr11 59980881 59981189 -88802283 - AluY SINE Alu 0 311 3 188 339 0 0 chr11 59981195 59981257 -88802215 + MIR SINE MIR 118 179 -83 687 297 29 13 chr11 59981577 59981816 -88801656 + MIR SINE MIR 20 262 0 2324 111 3 0 chr11 59981817 59982123 -88801349 - AluSx SINE Alu -3 309 3 1060 241 111 42 chr11 59982142 59982574 -88800898 + MLT1C LTR MaLR 6 467 0 2385 97 0 0 chr11 59982769 59983078 -88800394 + AluSx SINE Alu 1 309 -3 571 309 44 84 chr11 59983147 59983600 -88799872 - L2 LINE L2 0 3272 2838 334 247 33 104 chr11 59984743 59984925 -88798547 + MER91A DNA MER1_type 1 169 -27 424 223 11 0 chr11 59985006 59985100 -88798372 - MIR SINE MIR -154 108 14 1876 115 0 35 chr11 59985709 59985996 -88797476 - AluSx SINE Alu 0 312 36 235 329 131 0 chr11 59986079 59986216 -88797256 - MIR SINE MIR -14 248 94 347 233 36 35 chr11 59987050 59987164 -88796308 - MIR3 SINE MIR -100 108 15 346 213 59 24 chr11 59987789 59987919 -88795553 + MIR SINE MIR 20 159 -50 647 216 38 54 chr11 59988603 59988788 -88794684 - MIR SINE MIR -1 261 80 226 229 49 0 chr11 59990226 59990287 -88793185 + MER5B DNA MER1_type 89 152 -26 349 272 173 19 chr11 59990314 59990476 -88792996 - MER5A DNA MER1_type 0 189 3 323 294 48 8 chr11 59990705 59990831 -88792641 - MIR SINE MIR -87 175 45 536 235 125 20 chr11 59991525 59991725 -88791747 + L2 LINE L2 3078 3298 -15 1392 146 9 0 chr11 59992073 59992286 -88791186 + AluSg/x SINE Alu 97 311 -1 4382 154 60 101 chr11 59992288 59993360 -88790112 + Charlie1 DNA MER1_type 1496 2611 -150 2163 124 0 0 chr11 59993360 59993658 -88789814 - AluSx SINE Alu -14 298 1 4382 154 60 101 chr11 59993658 59993806 -88789666 + Charlie1 DNA MER1_type 2611 2659 -102 2054 99 30 58 chr11 59993806 59993871 -88789601 - L1MA3 LINE L1 0 6305 6240 2264 112 6 16 chr11 59993871 59994183 -88789289 - AluSx SINE Alu -3 309 1 2054 99 30 58 chr11 59994183 59994512 -88788960 - L1MA3 LINE L1 -65 6240 5922 4382 154 60 101 chr11 59994512 59994611 -88788861 + Charlie1 DNA MER1_type 2659 2761 0 1219 345 46 9 chr11 59994614 59995156 -88788316 + ERVL LTR ERVL 2837 3398 -2366 630 311 68 15 chr11 59995238 59995306 -88788166 + ERVL LTR ERVL 3520 3583 -2181 2163 118 0 29 chr11 59995306 59995619 -88787853 - AluSg1 SINE Alu -5 304 1 630 311 68 15 chr11 59995619 59995965 -88787507 + ERVL LTR ERVL 3583 3984 -1780 442 312 23 23 chr11 59996134 59996307 -88787165 + LTR16C LTR ERVL 305 477 -14 452 271 109 16 chr11 59996323 59996515 -88786957 + L2 LINE L2 3054 3263 -50 578 299 86 21 chr11 59996820 59997054 -88786418 + MIR SINE MIR 14 262 0 2262 127 0 6 chr11 59997763 59998077 -88785395 - AluSx SINE Alu 0 312 1 306 270 104 71 chr11 59998141 59998772 -88784700 - L1MDa LINE L1 -4438 1691 988 1782 164 8 0 chr11 59998772 59999040 -88784432 - AluSx SINE Alu -13 299 30 306 270 104 71 chr11 59999040 59999483 -88783989 - L1MDa LINE L1 -5141 988 561 1255 175 0 5 chr11 59999892 60000086 -88783386 - AluJb SINE Alu -33 279 87 442 220 99 28 chr11 60000091 60000232 -88783240 - L1MDa LINE L1 -5962 157 7 191 309 179 0 chr11 60000823 60000907 -88782565 - L2 LINE L2 -6 3266 3168 658 293 66 52 chr11 60003370 60003810 -88779662 + MER113 DNA MER1_type? 16 461 -60 278 94 0 4 chr11 60004332 60004546 -88778926 - AluSc SINE Alu -9 290 1 251 318 91 39 chr11 60004759 60004913 -88778559 + MIR3 SINE MIR 36 197 -11 21 71 0 0 chr11 60005048 60005090 -88778382 + AT_rich Low_complexity Low_complexity 1 42 0 863 204 55 70 chr11 60005261 60005515 -88777957 + MER33 DNA MER1_type 1 250 -2335 1868 154 7 14 chr11 60005515 60005808 -88777664 + AluJo SINE Alu 1 291 -21 863 204 55 70 chr11 60005808 60005882 -88777590 + MER33 DNA MER1_type 250 324 0 1620 131 15 11 chr11 60006018 60006292 -88777180 - L1PB4 LINE L1 -2 6154 5880 1141 149 34 0 chr11 60007623 60007798 -88775674 - FRAM SINE Alu -3 173 1 960 249 98 32 chr11 60007820 60008197 -88775275 + MER113 DNA MER1_type? 120 521 0 328 317 14 21 chr11 60008429 60008571 -88774901 + MIR3 SINE MIR 15 155 -53 305 173 0 0 chr11 60009025 60009077 -88774395 - MIR SINE MIR -62 146 95 2292 107 3 19 chr11 60009451 60009768 -88773704 - AluSx SINE Alu 0 312 1 208 239 22 0 chr11 60009784 60009830 -88773642 - L2 LINE L2 -17 3296 3250 257 258 16 0 chr11 60010020 60010082 -88773390 - MIR SINE MIR -112 150 88 411 227 48 0 chr11 60010101 60010215 -88773257 + L1MD2 LINE L1 6246 7985 -10 1510 144 74 7 chr11 60010245 60010516 -88772956 + AluJo SINE Alu 11 299 -13 1878 120 0 37 chr11 60010544 60010844 -88772628 + AluSx SINE Alu 1 289 -23 396 297 51 41 chr11 60011157 60011352 -88772120 - MIR SINE MIR -51 211 15 226 231 192 0 chr11 60012380 60012458 -88771014 - MIR SINE MIR -64 144 52 287 302 35 9 chr11 60012731 60012847 -88770625 - MIR3 SINE MIR 0 208 90 2074 104 23 10 chr11 60013119 60013428 -88770044 - AluSq SINE Alu 0 313 1 3418 210 48 27 chr11 60013431 60014340 -88769132 - L1MD3 LINE L1 0 8042 7127 607 286 172 19 chr11 60014548 60014961 -88768511 - L2 LINE L2 -19 3294 2819 705 159 0 0 chr11 60015097 60015204 -88768268 - U6 snRNA snRNA 0 107 1 2336 91 0 3 chr11 60015211 60015520 -88767952 - AluSq SINE Alu -5 308 1 755 194 22 0 chr11 60015714 60015848 -88767624 + AluJo SINE Alu 2 138 -174 452 222 94 0 chr11 60015851 60015968 -88767504 + MER113 DNA MER1_type? 320 447 -74 232 250 15 15 chr11 60016044 60016112 -88767360 - MIR3 SINE MIR -53 155 88 215 207 69 0 chr11 60016428 60016486 -88766986 + MIR SINE MIR 54 115 -147 1745 172 116 58 chr11 60016822 60016885 -88766587 - MLT1C LTR MaLR -4 463 405 1921 104 70 0 chr11 60016885 60017172 -88766300 + AluSx SINE Alu 3 309 -3 1745 172 116 58 chr11 60017172 60017538 -88765934 - MLT1C LTR MaLR -62 405 9 283 119 17 17 chr11 60017569 60017628 -88765844 + (TG)n Simple_repeat Simple_repeat 1 59 0 376 331 16 0 chr11 60018109 60018230 -88765242 + MIR SINE MIR 16 138 -124 228 313 12 0 chr11 60019071 60019151 -88764321 + L2 LINE L2 2908 2988 -284 545 279 110 45 chr11 60019154 60019394 -88764078 + MIR SINE MIR 6 255 -7 426 338 19 0 chr11 60019779 60019939 -88763533 + MIR SINE MIR 44 206 -56 204 40 0 0 chr11 60020056 60020081 -88763391 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 320 323 24 24 chr11 60020088 60020212 -88763260 - L1ME4a LINE L1 -30 6091 5968 2147 121 3 0 chr11 60020260 60020566 -88762906 - AluSx SINE Alu -5 307 1 653 51 0 0 chr11 60020846 60020924 -88762548 + AluSq/x SINE Alu 42 119 -193 194 81 27 0 chr11 60020924 60020961 -88762511 + (TA)n Simple_repeat Simple_repeat 1 38 0 270 323 83 10 chr11 60021003 60021195 -88762277 - L1ME4a LINE L1 -318 5866 5661 2315 89 3 6 chr11 60021302 60021615 -88761857 - AluSp SINE Alu -1 312 1 277 292 110 34 chr11 60021766 60021831 -88761641 - MIR SINE MIR -18 244 185 1441 169 6 90 chr11 60021831 60022011 -88761461 - AluJo SINE Alu -8 304 110 297 89 0 0 chr11 60022011 60022056 -88761416 + (TA)n Simple_repeat Simple_repeat 2 46 0 1619 161 14 7 chr11 60022060 60022340 -88761132 - AluJo SINE Alu -30 282 1 1441 169 6 90 chr11 60022340 60022486 -88760986 - AluJo SINE Alu -205 107 1 277 292 110 34 chr11 60022486 60022629 -88760843 - MIR SINE MIR -77 185 20 2245 109 0 0 chr11 60022707 60023019 -88760453 + AluSx SINE Alu 1 312 0 23 0 0 0 chr11 60023019 60023042 -88760430 + AT_rich Low_complexity Low_complexity 1 23 0 188 379 62 12 chr11 60023471 60023632 -88759840 + L3b LINE CR1 1188 1356 -227 * 331 311 131 18 chr11 60023630 60023852 -88759620 - MIR SINE MIR -1 261 15 2056 102 3 40 chr11 60024320 60024642 -88758830 + AluSx SINE Alu 1 310 -2 2051 154 0 0 chr11 60025303 60025615 -88757857 - AluSx SINE Alu 0 312 1 637 207 0 0 chr11 60026217 60026338 -88757134 + MIR SINE MIR 14 134 -128 376 288 38 8 chr11 60027034 60027166 -88756306 - MIR SINE MIR -81 181 46 1459 199 28 23 chr11 60027213 60027264 -88756208 - Charlie5 DNA MER1_type 0 2624 2575 1975 133 0 10 chr11 60027264 60027599 -88755873 + AluSx SINE Alu 1 312 0 1459 199 28 23 chr11 60027599 60027934 -88755538 - Charlie5 DNA MER1_type -49 2575 2236 574 184 17 0 chr11 60027955 60028085 -88755387 - Charlie5 DNA MER1_type -2433 179 1 896 245 22 62 chr11 60028257 60028530 -88754942 + MIR SINE MIR 1 262 0 368 293 115 11 chr11 60028543 60028717 -88754755 - MIR3 SINE MIR -1 207 16 1956 133 30 0 chr11 60029046 60029346 -88754126 + AluSx SINE Alu 1 309 -3 187 373 0 0 chr11 60029411 60029486 -88753986 - L2 LINE L2 -4 3268 3194 243 310 10 10 chr11 60029696 60029796 -88753676 - L1ME LINE L1 -206 5915 5816 1869 135 3 35 chr11 60029934 60030253 -88753219 + AluSq SINE Alu 1 309 -4 382 234 35 82 chr11 60031224 60031366 -88752106 - MER113 DNA MER1_type? -36 485 351 2267 89 0 10 chr11 60031366 60031669 -88751803 - AluSg1 SINE Alu -9 300 1 382 234 35 82 chr11 60031669 60031697 -88751775 - MER113 DNA MER1_type? -170 351 323 896 202 35 6 chr11 60031920 60032093 -88751379 - MER45A DNA AcHobo 0 178 1 583 279 41 41 chr11 60032205 60032439 -88751033 - L1MC4a LINE L1 -1865 5943 5707 1995 118 0 14 chr11 60032439 60032736 -88750736 + AluSx SINE Alu 1 293 -19 583 279 41 41 chr11 60032736 60032770 -88750702 - L1MC4a LINE L1 -2100 5708 5675 1903 188 15 42 chr11 60032814 60033123 -88750349 - MSTD LTR MaLR -2 394 96 2096 106 0 0 chr11 60033123 60033448 -88750024 - AluSx SINE Alu 0 325 1 1903 188 15 42 chr11 60033448 60033542 -88749930 - MSTD LTR MaLR -300 96 1 274 210 0 0 chr11 60033545 60033607 -88749865 - MER113 DNA MER1_type? -380 141 80 2039 109 3 7 chr11 60033634 60033928 -88749544 + AluJb SINE Alu 1 293 -19 287 247 11 11 chr11 60034357 60034450 -88749022 + (CA)n Simple_repeat Simple_repeat 1 93 0 400 273 2 11 chr11 60034868 60034980 -88748492 - MLT1I LTR MaLR 0 428 318 189 267 0 0 chr11 60035265 60035310 -88748162 + MIR SINE MIR 52 96 -166 481 316 51 5 chr11 60035480 60035695 -88747777 - LTR33 LTR ERVL -233 288 64 257 273 25 83 chr11 60035740 60035837 -88747635 + MIR SINE MIR 93 183 -79 2459 74 3 0 chr11 60035837 60036148 -88747324 + AluSp SINE Alu 1 312 -1 257 273 25 83 chr11 60036148 60036171 -88747301 + MIR SINE MIR 183 206 -56 255 319 14 0 chr11 60037122 60037194 -88746278 - L2 LINE L2 -1 3271 3199 323 319 70 22 chr11 60037557 60037742 -88745730 - MIR3 SINE MIR -7 201 8 246 260 128 98 chr11 60039066 60039331 -88744141 - L2 LINE L2 -13 3259 2987 578 175 0 0 chr11 60039478 60039575 -88743897 - MER5A DNA MER1_type -80 109 13 254 319 17 26 chr11 60040398 60040509 -88742963 - MIR SINE MIR 0 262 152 531 223 27 49 chr11 60040509 60040693 -88742779 - MER104 DNA MER2_type 0 180 1 226 303 26 0 chr11 60040714 60040790 -88742682 + MIR SINE MIR 40 117 -145 264 311 39 29 chr11 60041136 60041239 -88742233 + L2 LINE L2 3207 3310 -3 360 0 0 0 chr11 60041366 60041406 -88742066 + (TG)n Simple_repeat Simple_repeat 2 41 0 279 287 133 43 chr11 60041741 60041929 -88741543 - MIR SINE MIR -35 227 23 771 245 15 25 chr11 60041971 60042175 -88741297 + MIR SINE MIR 40 241 -21 302 301 122 8 chr11 60043214 60043337 -88740135 + L2 LINE L2 3172 3308 -5 228 224 0 0 chr11 60043428 60043477 -88739995 - L2 LINE L2 -2 3311 3263 216 143 0 0 chr11 60043948 60043990 -88739482 + (TG)n Simple_repeat Simple_repeat 1 42 0 2355 86 0 0 chr11 60044654 60044956 -88738516 + AluSx SINE Alu 1 302 -10 186 311 0 0 chr11 60045158 60045203 -88738269 + L2 LINE L2 3209 3253 -19 717 220 24 6 chr11 60045235 60045403 -88738069 + MIR SINE MIR 87 257 -5 2008 142 0 0 chr11 60045490 60045792 -88737680 + AluJb SINE Alu 1 302 -10 192 203 186 0 chr11 60046584 60046643 -88736829 - MER5A DNA MER1_type -7 182 113 426 247 67 13 chr11 60046654 60046968 -88736504 - MLT1J LTR MaLR -2 509 66 261 337 0 0 chr11 60047833 60047922 -88735550 - L3b LINE CR1 -153 1430 1342 352 292 53 27 chr11 60048272 60048436 -88735036 + MIR3 SINE MIR 21 189 -19 1229 173 59 35 chr11 60048748 60049037 -88734435 + AluJo SINE Alu 1 296 -16 391 224 0 80 chr11 60049091 60049216 -88734256 + L3 LINE CR1 1402 1516 -61 310 266 137 8 chr11 60049749 60049873 -88733599 + L3 LINE CR1 1415 1554 -23 305 140 18 0 chr11 60050628 60050685 -88732787 + (TG)n Simple_repeat Simple_repeat 1 58 0 963 260 122 18 chr11 60050703 60051038 -88732434 - LTR16C LTR ERVL -33 458 89 279 79 0 0 chr11 60051112 60051150 -88732322 + (TG)n Simple_repeat Simple_repeat 2 39 0 1787 130 10 31 chr11 60051261 60051554 -88731918 + AluJo SINE Alu 1 287 -25 390 242 62 62 chr11 60052208 60052369 -88731103 + MIR SINE MIR 46 206 -56 434 227 59 0 chr11 60052497 60052624 -88730848 - MIR3 SINE MIR -23 185 51 213 282 91 18 chr11 60052884 60052994 -88730478 - L2 LINE L2 -21 3251 3134 292 303 80 11 chr11 60053203 60053378 -88730094 - L2 LINE L2 -220 3052 2866 532 234 41 4 chr11 60053380 60053530 -88729942 - MIR SINE MIR -40 168 15 460 289 147 6 chr11 60053842 60053998 -88729474 - MIR SINE MIR -21 241 64 647 184 0 7 chr11 60054410 60054557 -88728915 + CT-rich Low_complexity Low_complexity 3 148 0 2180 125 0 0 chr11 60054559 60054871 -88728601 - AluSx SINE Alu 0 312 1 197 316 93 29 chr11 60055248 60055387 -88728085 - L2 LINE L2 -189 3083 2936 505 288 68 0 chr11 60055805 60055968 -88727504 - MIR SINE MIR -29 233 60 220 325 0 12 chr11 60056670 60056753 -88726719 + GA-rich Low_complexity Low_complexity 2 83 0 359 361 22 6 chr11 60056826 60057009 -88726463 - MIR SINE MIR -40 222 37 213 254 0 42 chr11 60057024 60057095 -88726377 + GA-rich Low_complexity Low_complexity 2 69 0 1133 169 0 0 chr11 60058290 60058474 -88724998 - AluJ SINE Alu 0 312 129 249 214 22 11 chr11 60058474 60058563 -88724909 + CT-rich Low_complexity Low_complexity 1 90 0 699 179 73 0 chr11 60058570 60058693 -88724779 - AluJ SINE Alu -170 132 1 372 190 35 35 chr11 60058980 60059096 -88724376 + MER113 DNA MER1_type? 33 148 -373 1008 222 93 29 chr11 60059096 60059407 -88724065 + L1MC4 LINE L1 7527 7857 -185 2285 89 0 3 chr11 60059408 60059712 -88723760 + AluSq SINE Alu 1 303 -10 321 26 0 0 chr11 60059822 60059860 -88723612 + (TG)n Simple_repeat Simple_repeat 2 39 0 460 185 43 0 chr11 60059923 60060015 -88723457 + L1MC4 LINE L1 7942 8037 -5 831 310 81 0 chr11 60060028 60060325 -88723147 + MER113 DNA MER1_type? 136 456 -65 3874 181 47 141 chr11 60060792 60060986 -88722486 - L1MC3 LINE L1 -8 7777 7566 231 36 0 0 chr11 60060986 60061014 -88722458 + (GTTTG)n Simple_repeat Simple_repeat 3 30 0 213 59 29 0 chr11 60061026 60061060 -88722412 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 2311 89 0 0 chr11 60061060 60061342 -88722130 - AluSq SINE Alu -31 282 1 587 98 0 12 chr11 60061060 60061135 -88722337 - AluSp/q SINE Alu -5 308 208 3874 181 47 141 chr11 60061135 60061352 -88722120 - L1MC3 LINE L1 -224 7561 7325 189 0 0 0 chr11 60061352 60061373 -88722099 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 1790 150 11 4 chr11 60061375 60061655 -88721817 - AluJo SINE Alu -30 282 1 3874 181 47 141 chr11 60061655 60062238 -88721234 - L1MC3 LINE L1 -461 7324 6688 2088 103 0 0 chr11 60062238 60062510 -88720962 - AluSx SINE Alu -40 272 1 3874 181 47 141 chr11 60062510 60063059 -88720413 - L1MC3 LINE L1 -1097 6688 6576 1890 173 3 7 chr11 60063059 60063360 -88720112 + AluJo SINE Alu 1 300 -12 3874 181 47 141 chr11 60063360 60063511 -88719961 - L1MC3 LINE L1 -1209 6576 6412 233 320 20 87 chr11 60063511 60063661 -88719811 + L2 LINE L2 3152 3291 -22 192 338 29 0 chr11 60063657 60063725 -88719747 - L2 LINE L2 -16 3256 3187 * 481 276 0 9 chr11 60063841 60063957 -88719515 + L2 LINE L2 3190 3304 -9 279 277 50 0 chr11 60064164 60064265 -88719207 + Tigger8 DNA MER2_type 253 358 -308 1759 181 0 13 chr11 60064588 60064892 -88718580 + AluJb SINE Alu 1 300 -12 260 300 38 0 chr11 60065441 60065521 -88717951 - MIR SINE MIR -40 222 140 285 283 44 18 chr11 60066209 60066322 -88717150 - MIR SINE MIR -61 147 32 717 272 4 42 chr11 60066324 60066563 -88716909 + Charlie8 DNA MER1_type 4 233 -2184 1885 82 74 4 chr11 60066896 60067153 -88716319 - AluSp SINE Alu -38 275 1 1477 240 18 6 chr11 60067733 60068070 -88715402 - MER58B DNA MER1_type 0 341 1 1338 227 121 87 chr11 60068107 60068392 -88715080 - Charlie2 DNA MER1_type -62 2800 2526 2519 81 3 0 chr11 60068392 60068702 -88714770 - AluSp SINE Alu -2 311 1 1338 227 121 87 chr11 60068702 60068763 -88714709 - Charlie2 DNA MER1_type -336 2526 2469 2277 75 7 10 chr11 60068763 60069055 -88714417 - AluSx SINE Alu -18 294 4 1338 227 121 87 chr11 60069055 60069531 -88713941 - Charlie2 DNA MER1_type -393 2469 1942 2393 109 0 0 chr11 60069531 60069843 -88713629 + AluSx SINE Alu 1 312 0 1338 227 121 87 chr11 60069843 60069905 -88713567 - Charlie2 DNA MER1_type -920 1942 1884 259 250 200 17 chr11 60069915 60070035 -88713437 - Charlie2 DNA MER1_type -2457 325 184 2151 187 91 88 chr11 60070195 60070719 -88712753 + MER67B LTR ERV1 1 529 -132 1722 143 40 37 chr11 60070719 60071019 -88712453 + AluJo SINE Alu 4 304 -8 2151 187 91 88 chr11 60071019 60071151 -88712321 + MER67B LTR ERV1 529 659 -2 2257 125 0 0 chr11 60071500 60071803 -88711669 + AluSx SINE Alu 1 303 -9 375 337 71 15 chr11 60072660 60072856 -88710616 + L1MC4a LINE L1 5720 5926 -1882 246 32 0 0 chr11 60072872 60072903 -88710569 + (CA)n Simple_repeat Simple_repeat 1 31 0 250 195 47 0 chr11 60072953 60073023 -88710449 + MER45 DNA AcHobo 58 1538 -43 1524 244 74 40 chr11 60073052 60073650 -88709822 - L1ME1 LINE L1 -5 6161 5544 21 36 0 0 chr11 60074138 60074166 -88709306 + AT_rich Low_complexity Low_complexity 1 28 0 36 23 0 0 chr11 60074223 60074266 -88709206 + AT_rich Low_complexity Low_complexity 1 43 0 337 315 142 12 chr11 60074488 60074602 -88708870 - L1ME4a LINE L1 -277 5844 5746 186 43 0 0 chr11 60074602 60074625 -88708847 + (TG)n Simple_repeat Simple_repeat 2 24 0 337 315 142 12 chr11 60074625 60075025 -88708447 - L1ME4a LINE L1 -375 5746 5263 215 294 59 0 chr11 60075026 60075094 -88708378 + L2 LINE L2 3242 3313 0 334 290 130 15 chr11 60075716 60075916 -88707556 + L1ME4a LINE L1 5513 5735 -386 355 214 61 41 chr11 60076061 60076159 -88707313 + L1ME4a LINE L1 6011 6110 -11 2448 57 0 14 chr11 60076211 60076508 -88706964 + AluY SINE Alu 1 293 -18 231 213 0 0 chr11 60076594 60076641 -88706831 - L1ME4a LINE L1 -72 6049 6003 203 274 0 0 chr11 60076644 60076695 -88706777 + (CATATA)n Simple_repeat Simple_repeat 3 53 0 370 221 15 113 chr11 60076697 60076892 -88706580 - L1MC4a LINE L1 -1914 5894 5719 248 291 101 0 chr11 60076981 60077060 -88706412 + MIR3 SINE MIR 113 199 -9 256 128 0 0 chr11 60077616 60077655 -88705817 - L2 LINE L2 -11 3261 3223 215 273 78 13 chr11 60079246 60079323 -88704149 + MIR SINE MIR 87 168 -94 264 226 333 0 chr11 60079338 60079431 -88704041 + MIR SINE MIR 100 223 -39 244 205 0 0 chr11 60079489 60079528 -88703944 + L2 LINE L2 3255 3293 -20 26 0 0 0 chr11 60079749 60079775 -88703697 + AT_rich Low_complexity Low_complexity 1 26 0 1814 167 0 7 chr11 60079778 60080066 -88703406 - AluJb SINE Alu -26 286 1 477 200 131 151 chr11 60080584 60080692 -88702780 + MER34C LTR ERV1 3 112 -430 1806 144 7 31 chr11 60080692 60080984 -88702488 + AluJo SINE Alu 12 296 -16 477 200 131 151 chr11 60080984 60081411 -88702061 + MER34C LTR ERV1 112 527 -15 531 281 86 19 chr11 60081609 60081819 -88701653 + MIR SINE MIR 20 243 -19 36 91 0 0 chr11 60081871 60081970 -88701502 + AT_rich Low_complexity Low_complexity 1 99 0 304 185 0 0 chr11 60081970 60082024 -88701448 + AluJ/FLAM SINE Alu 44 97 -205 180 125 0 0 chr11 60082024 60082056 -88701416 + (A)n Simple_repeat Simple_repeat 1 32 0 212 328 69 15 chr11 60082651 60082782 -88700690 - MIR3 SINE MIR -53 155 18 2008 155 0 16 chr11 60083637 60083954 -88699518 + AluJb SINE Alu 1 312 0 972 224 56 87 chr11 60084197 60084543 -88698929 + L1MB7 LINE L1 5726 6060 -124 2185 114 7 0 chr11 60084543 60084842 -88698630 + AluSx SINE Alu 1 301 -11 972 224 56 87 chr11 60084842 60084887 -88698585 + L1MB7 LINE L1 6060 6105 -79 590 214 0 0 chr11 60084926 60085024 -88698448 + FLAM_A SINE Alu 19 116 -26 227 186 34 0 chr11 60085024 60085083 -88698389 + L1MB7 LINE L1 6124 6184 0 747 261 18 27 chr11 60085212 60085434 -88698038 + MIR SINE MIR 43 262 0 399 273 28 49 chr11 60086141 60086264 -88697208 + MER5A DNA MER1_type 50 171 -18 875 86 0 57 chr11 60086264 60086404 -88697068 + FLAM_C SINE Alu 2 133 0 399 273 28 49 chr11 60086404 60086423 -88697049 + MER5A DNA MER1_type 171 189 0 201 296 86 0 chr11 60086621 60086702 -88696770 - MIR SINE MIR -72 190 103 354 215 83 41 chr11 60087105 60087226 -88696246 - MER5B DNA MER1_type -35 143 18 628 261 80 7 chr11 60087757 60087943 -88695529 - MIR SINE MIR -61 147 4 461 215 54 39 chr11 60088093 60088223 -88695249 + MER94 DNA DNA 1 132 -2 221 318 0 0 chr11 60088235 60088301 -88695171 + MIR SINE MIR 97 162 -100 2687 38 0 16 chr11 60088435 60088749 -88694723 - AluY SINE Alu -2 309 1 921 120 0 8 chr11 60089258 60089391 -88694081 + FLAM_C SINE Alu 2 133 0 187 238 12 75 chr11 60089520 60089600 -88693872 + MIR SINE MIR 107 181 -81 288 380 21 7 chr11 60089795 60089937 -88693535 + MIR SINE MIR 20 163 -99 414 0 0 0 chr11 60090104 60090150 -88693322 + (TA)n Simple_repeat Simple_repeat 2 47 0 476 197 43 43 chr11 60090382 60090481 -88692991 - MER69A DNA AcHobo -2349 177 76 2184 115 0 0 chr11 60090481 60090767 -88692705 + AluSx SINE Alu 21 306 -6 476 197 43 43 chr11 60090767 60090784 -88692688 - MER69A DNA AcHobo -2449 77 61 238 232 188 36 chr11 60090879 60090991 -88692481 - MIR SINE MIR -120 142 14 193 119 48 0 chr11 60091779 60091821 -88691651 + C-rich Low_complexity Low_complexity 3 46 0 247 333 129 0 chr11 60092084 60092216 -88691256 - L2 LINE L2 -3 3269 3121 486 237 176 0 chr11 60092373 60092504 -88690968 - MIR SINE MIR -30 232 79 543 279 81 15 chr11 60092641 60092860 -88690612 + Charlie8 DNA MER1_type 2 244 -2173 2319 76 10 0 chr11 60093786 60094074 -88689398 + AluSx SINE Alu 9 299 -13 185 273 91 13 chr11 60094160 60094237 -88689235 + MIR SINE MIR 62 144 -118 2303 113 0 0 chr11 60094326 60094619 -88688853 - AluSx SINE Alu -19 293 1 1979 155 0 32 chr11 60095045 60095361 -88688111 + AluJo SINE Alu 1 306 -6 1088 113 142 57 chr11 60095529 60095607 -88687865 + MER30 DNA MER1_type 1 71 -159 2076 114 13 10 chr11 60095607 60095925 -88687547 + AluSq SINE Alu 1 313 0 1088 113 142 57 chr11 60095925 60096058 -88687414 + MER30 DNA MER1_type 71 230 0 184 241 19 0 chr11 60096651 60096705 -88686767 - MIR SINE MIR -76 132 78 252 0 0 0 chr11 60097106 60097134 -88686338 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 826 232 62 43 chr11 60097223 60097526 -88685946 + L1ME3 LINE L1 5768 6079 -83 207 114 0 0 chr11 60097526 60097561 -88685911 + (TG)n Simple_repeat Simple_repeat 1 35 0 826 232 62 43 chr11 60097561 60097580 -88685892 + L1ME3 LINE L1 6079 6096 -66 486 134 0 0 chr11 60097888 60097955 -88685517 + AluJ/FLAM SINE Alu 2 68 -244 1216 243 141 10 chr11 60098609 60099000 -88684472 + L2 LINE L2 2264 2705 -609 1099 253 158 30 chr11 60099004 60099442 -88684030 + L2 LINE L2 2820 3313 0 2408 78 3 3 chr11 60100439 60100733 -88682739 + AluY SINE Alu 1 294 -17 3159 116 4 14 chr11 60100836 60101328 -88682144 - LTR15 LTR ERV1 -6 487 1 257 281 83 16 chr11 60102041 60102162 -88681310 + L2 LINE L2 3185 3313 0 445 258 89 0 chr11 60103309 60103433 -88680039 + MIR3 SINE MIR 68 202 -6 2269 132 0 0 chr11 60103503 60103813 -88679659 + AluSx SINE Alu 1 310 -2 291 271 52 21 chr11 60104246 60104342 -88679130 - MIR3 SINE MIR -23 185 87 464 306 105 39 chr11 60104344 60104726 -88678746 + L1MC4a LINE L1 4522 4928 -1218 437 300 66 37 chr11 60104799 60105473 -88677999 + L1MC4a LINE L1 4964 5653 -468 756 88 0 10 chr11 60105576 60105678 -88677794 + FLAM_A SINE Alu 24 124 -18 354 326 6 55 chr11 60105679 60105860 -88677612 + L1MC4a LINE L1 5775 5946 -1862 234 0 0 0 chr11 60106096 60106122 -88677350 + (TG)n Simple_repeat Simple_repeat 1 26 0 220 305 130 23 chr11 60106152 60106283 -88677189 - MIR SINE MIR -78 184 40 256 278 120 0 chr11 60106456 60106564 -88676908 - L1ME4a LINE L1 -33 6088 5968 537 324 87 10 chr11 60106857 60107169 -88676303 + L1ME4a LINE L1 4963 5298 -848 257 202 119 9 chr11 60107214 60107323 -88676149 + MER3 DNA MER1_type 49 122 -87 440 139 78 43 chr11 60107335 60107450 -88676022 - MER3 DNA MER1_type -49 160 42 318 223 32 21 chr11 60107430 60107524 -88675948 - MER3 DNA MER1_type -114 95 1 * 258 267 22 0 chr11 60107528 60107618 -88675854 + L1ME4a LINE L1 5341 5432 -730 433 340 51 22 chr11 60107655 60107970 -88675502 + L1ME4a LINE L1 5531 5854 -267 382 289 164 40 chr11 60108205 60108406 -88675066 + MIR SINE MIR 6 231 -31 372 251 122 91 chr11 60108438 60108535 -88674937 + L1ME4a LINE L1 5840 5933 -188 2337 98 0 3 chr11 60108535 60108832 -88674640 - AluSc SINE Alu -11 298 3 372 251 122 91 chr11 60108832 60108997 -88674475 + L1ME4a LINE L1 5933 6110 -11 302 229 25 76 chr11 60109129 60109162 -88674310 + L1ME4a LINE L1 6009 6042 -79 2270 109 0 17 chr11 60109162 60109464 -88674008 - AluSx SINE Alu -15 297 1 302 229 25 76 chr11 60109464 60109548 -88673924 + L1ME4a LINE L1 6042 6120 -1 220 337 53 21 chr11 60110638 60110733 -88672739 + MIR SINE MIR 46 143 -65 2253 86 20 0 chr11 60111069 60111361 -88672111 - AluY SINE Alu 0 311 14 379 293 20 0 chr11 60112922 60113021 -88670451 - MIR SINE MIR -34 228 128 308 224 79 0 chr11 60113379 60113455 -88670017 + MIR SINE MIR 35 116 -92 596 235 67 5 chr11 60114232 60114435 -88669037 + L1ME3A LINE L1 5726 5942 -228 921 146 0 0 chr11 60114435 60114572 -88668900 + AluSx SINE Alu 1 137 -175 10036 12 0 0 chr11 60114572 60116568 -88666904 + L1HS LINE L1 4160 6155 0 31 58 0 0 chr11 60116568 60116620 -88666852 + AT_rich Low_complexity Low_complexity 1 52 0 1074 133 39 6 chr11 60116620 60116801 -88666671 + AluSx SINE Alu 118 304 -6 362 263 253 11 chr11 60116801 60116991 -88666481 + L1ME3A LINE L1 5930 6165 -5 305 319 53 0 chr11 60117013 60117126 -88666346 + MIR SINE MIR 48 166 -96 1855 121 0 15 chr11 60117400 60117672 -88665800 - AluJb SINE Alu -44 268 1 557 209 7 0 chr11 60117763 60117916 -88665556 + (CAT)n Simple_repeat Simple_repeat 2 155 0 206 319 50 15 chr11 60118127 60118279 -88665193 + MIR SINE MIR 23 182 -26 293 241 143 34 chr11 60118715 60118785 -88664687 + L1ME4a LINE L1 5666 5727 -394 1875 142 19 19 chr11 60118785 60119096 -88664376 + AluJo SINE Alu 1 311 -1 293 241 143 34 chr11 60119096 60119291 -88664181 + L1ME4a LINE L1 5727 5960 -161 306 211 114 41 chr11 60119312 60119435 -88664037 - L1MCa LINE L1 -4363 2063 1932 22 0 0 0 chr11 60119530 60119552 -88663920 + AT_rich Low_complexity Low_complexity 1 22 0 360 370 20 30 chr11 60119731 60119931 -88663541 - L1ME4a LINE L1 -173 5948 5751 296 291 83 9 chr11 60120149 60120308 -88663164 - MIR3 SINE MIR -32 176 7 570 270 75 35 chr11 60120332 60120558 -88662914 + L2 LINE L2 2941 3175 -97 214 248 89 40 chr11 60120817 60120918 -88662554 - MIR SINE MIR -80 182 77 293 326 14 21 chr11 60121001 60121142 -88662330 + MIR3 SINE MIR 2 141 -67 241 276 197 8 chr11 60121833 60121960 -88661512 - MIR3 SINE MIR -11 197 47 203 156 89 0 chr11 60122290 60122335 -88661137 - L2 LINE L2 -1 3271 3223 202 217 0 22 chr11 60122344 60122390 -88661082 + CT-rich Low_complexity Low_complexity 2 46 0 337 267 69 0 chr11 60123098 60123199 -88660273 + MIR SINE MIR 89 196 -66 255 61 0 0 chr11 60123439 60123472 -88660000 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 2078 161 81 32 chr11 60123816 60124251 -88659221 + LTR2B LTR ERV1 35 490 0 2860 92 2 15 chr11 60124251 60124655 -88658817 + Harlequin LTR ERV1 1 399 -6497 * 14649 190 12 16 chr11 60124626 60127241 -88656231 + Harlequin LTR ERV1 255 2859 -4954 10552 59 1 2 chr11 60127237 60128592 -88654880 + Harlequin LTR ERV1 5544 6896 0 * 1857 193 46 18 chr11 60128592 60129042 -88654430 + LTR2B LTR ERV1 1 490 0 277 278 6 39 chr11 60129560 60129740 -88653732 + (CA)n Simple_repeat Simple_repeat 1 174 0 302 257 6 44 chr11 60130251 60130434 -88653038 + (CA)n Simple_repeat Simple_repeat 1 176 0 276 256 12 41 chr11 60130547 60130719 -88652753 + (CA)n Simple_repeat Simple_repeat 2 168 0 232 297 0 38 chr11 60130807 60130992 -88652480 + (CA)n Simple_repeat Simple_repeat 1 178 0 266 290 0 38 chr11 60131031 60131217 -88652255 + (CA)n Simple_repeat Simple_repeat 2 180 0 201 273 12 41 chr11 60131303 60131475 -88651997 + (CA)n Simple_repeat Simple_repeat 1 167 0 342 0 0 0 chr11 60131651 60131689 -88651783 + (CA)n Simple_repeat Simple_repeat 2 39 0 212 305 53 11 chr11 60132690 60132785 -88650687 - L3 LINE CR1 -66 1511 1413 330 274 147 0 chr11 60132970 60133065 -88650407 + MIR SINE MIR 45 153 -55 284 172 0 32 chr11 60133278 60133371 -88650101 + (TG)n Simple_repeat Simple_repeat 1 90 0 191 229 0 9 chr11 60133401 60133510 -88649962 + (TG)n Simple_repeat Simple_repeat 1 108 0 465 250 6 12 chr11 60133529 60133701 -88649771 + (TG)n Simple_repeat Simple_repeat 2 172 0 288 211 6 22 chr11 60133716 60133896 -88649576 + (TG)n Simple_repeat Simple_repeat 1 177 0 343 340 25 20 chr11 60134440 60134637 -88648835 - MIR SINE MIR -50 212 15 655 221 105 31 chr11 60135037 60135259 -88648213 + MIR SINE MIR 19 248 -14 699 251 40 96 chr11 60135416 60135578 -88647894 - L2 LINE L2 0 3313 3143 2395 79 0 0 chr11 60135578 60135881 -88647591 + AluSx SINE Alu 1 303 -9 699 251 40 96 chr11 60135881 60136144 -88647328 - L2 LINE L2 -170 3143 2912 775 284 50 48 chr11 60136627 60137130 -88646342 - L2 LINE L2 -1 3312 2709 784 235 203 0 chr11 60137133 60137414 -88646058 - MER46C DNA MER2_type 0 338 1 638 248 19 6 chr11 60137744 60137905 -88645567 + MIR SINE MIR 50 212 -50 572 224 20 14 chr11 60138920 60139067 -88644405 + MER46C DNA MER2_type 48 195 -143 467 279 37 0 chr11 60140089 60140225 -88643247 - MIR3 SINE MIR -2 206 66 671 241 78 21 chr11 60140382 60140573 -88642899 + MIR SINE MIR 20 221 -41 498 114 0 0 chr11 60140585 60140664 -88642808 + (ATGGTG)n Simple_repeat Simple_repeat 3 81 0 221 268 124 10 chr11 60140999 60141096 -88642376 + MIR SINE MIR 7 114 -94 534 169 0 0 chr11 60141262 60141351 -88642121 - Tigger5 DNA MER2_type -1 2322 2234 286 185 19 0 chr11 60141358 60141412 -88642060 - Tigger5 DNA MER2_type -2268 55 1 491 281 16 68 chr11 60141592 60141784 -88641688 - MIR SINE MIR -38 224 43 2175 117 0 0 chr11 60142098 60142398 -88641074 + AluSx SINE Alu 1 300 -12 774 148 8 0 chr11 60142687 60142809 -88640663 - FLAM_A SINE Alu -10 123 1 2047 144 0 3 chr11 60143395 60143707 -88639765 - AluSx SINE Alu -1 311 1 745 208 14 7 chr11 60143869 60144013 -88639459 - FRAM SINE Alu -31 145 1 1609 179 24 7 chr11 60144055 60144170 -88639302 + AluJb SINE Alu 3 115 -197 366 80 0 0 chr11 60144170 60144220 -88639252 + (CATA)n Simple_repeat Simple_repeat 3 52 0 1609 179 24 7 chr11 60144220 60144400 -88639072 + AluJb SINE Alu 115 303 -9 385 269 27 40 chr11 60144414 60144563 -88638909 + L1ME1 LINE L1 6005 6151 -15 235 243 29 14 chr11 60144587 60144657 -88638815 + MER112 DNA MER1_type 178 248 -12 414 292 17 0 chr11 60145332 60145452 -88638020 - MER103 DNA DNA -44 122 1 229 256 103 34 chr11 60145550 60145667 -88637805 + MIR SINE MIR 25 149 -113 241 318 80 30 chr11 60145921 60146122 -88637350 - L1MC4a LINE L1 -1643 6165 5955 652 45 82 12 chr11 60146138 60146382 -88637090 + (CA)n Simple_repeat Simple_repeat 1 260 0 2508 179 53 18 chr11 60146420 60146966 -88636506 + L1ME1 LINE L1 5598 6162 -4 2248 79 0 33 chr11 60146966 60147270 -88636202 - AluSx SINE Alu -18 294 1 351 206 59 29 chr11 60148478 60148580 -88634892 + MER53 DNA DNA 6 110 -79 211 294 20 20 chr11 60149623 60149725 -88633747 + L3 LINE CR1 1277 1378 -199 421 293 139 14 chr11 60149807 60150015 -88633457 - MIR SINE MIR -13 249 16 337 224 176 34 chr11 60150025 60150156 -88633316 + MER5A DNA MER1_type 14 178 0 406 289 40 7 chr11 60150194 60150346 -88633126 - MER91A DNA MER1_type -27 169 13 1166 116 4 0 chr11 60151736 60152004 -88631468 + (TGGA)n Simple_repeat Simple_repeat 1 269 0 294 341 8 24 chr11 60152793 60152916 -88630556 + MIR SINE MIR 25 145 -63 268 250 10 31 chr11 60153215 60153311 -88630161 + C-rich Low_complexity Low_complexity 5 98 0 288 335 45 0 chr11 60153761 60153916 -88629556 + MER103 DNA DNA 4 165 -1 1467 179 8 22 chr11 60157751 60158019 -88625453 + AluJo SINE Alu 3 266 -46 1192 92 0 23 chr11 60158052 60158226 -88625246 + AluSg/x SINE Alu 123 292 -18 392 276 37 37 chr11 60162173 60162307 -88621165 + L2 LINE L2 3178 3311 -2 720 265 63 11 chr11 60163262 60163451 -88620021 + MIR SINE MIR 40 238 -24 1316 203 62 4 chr11 60164920 60165176 -88618296 - AluJo SINE Alu -31 281 11 1370 142 36 43 chr11 60165428 60165628 -88617844 + L1MA4A LINE L1 6022 6221 -82 2424 74 0 26 chr11 60165628 60165939 -88617533 - AluSx SINE Alu -9 303 1 1370 142 36 43 chr11 60165939 60166019 -88617453 + L1MA4A LINE L1 6221 6300 -3 588 212 65 55 chr11 60166100 60166317 -88617155 - Charlie1 DNA MER1_type -297 2464 2246 1224 159 0 0 chr11 60166317 60166499 -88616973 + AluJb SINE Alu 122 303 -9 2034 154 3 0 chr11 60169210 60169515 -88613957 - AluJo SINE Alu -6 306 1 424 298 76 6 chr11 60169984 60170155 -88613317 - MER5A DNA MER1_type 0 189 7 185 203 68 68 chr11 60170293 60170352 -88613120 - MIR SINE MIR -170 92 34 615 186 0 0 chr11 60170402 60170504 -88612968 + FLAM_C SINE Alu 2 103 -40 2177 132 3 0 chr11 60170559 60170862 -88612610 + AluSx SINE Alu 1 304 -8 314 300 156 12 chr11 60171018 60171178 -88612294 + MIR SINE MIR 18 200 -62 698 103 14 89 chr11 60171588 60171714 -88611758 - Charlie1 DNA MER1_type -7 2754 2639 1778 190 0 7 chr11 60171714 60172004 -88611468 - AluJb SINE Alu -22 290 3 698 103 14 89 chr11 60172004 60172023 -88611449 - Charlie1 DNA MER1_type -122 2639 2620 * 1066 195 17 25 chr11 60172007 60172248 -88611224 - Charlie1 DNA MER1_type -2522 239 1 1371 12 0 0 chr11 60172276 60172438 -88611034 + L1PA2 LINE L1 5993 6154 -1 198 0 0 0 chr11 60172446 60172468 -88611004 + (A)n Simple_repeat Simple_repeat 1 22 0 435 159 187 9 chr11 60172468 60172575 -88610897 + MIR SINE MIR 20 145 -117 277 314 88 0 chr11 60172623 60172725 -88610747 - MIR SINE MIR -78 184 74 2119 100 62 3 chr11 60172833 60173124 -88610348 - AluSx SINE Alu -4 308 1 2384 94 3 0 chr11 60173126 60173423 -88610049 - AluSp SINE Alu -15 298 1 2496 50 3 7 chr11 60173432 60173732 -88609740 - AluY SINE Alu -12 299 1 195 260 156 31 chr11 60174385 60174481 -88608991 + MIR SINE MIR 38 145 -63 263 231 116 8 chr11 60176439 60176560 -88606912 - Charlie8 DNA MER1_type -2237 180 47 420 297 153 29 chr11 60177344 60177553 -88605919 + MIR SINE MIR 25 259 -3 712 170 29 64 chr11 60178188 60178359 -88605113 - FRAM SINE Alu 0 166 2 2387 78 0 16 chr11 60178462 60178771 -88604701 + AluY SINE Alu 1 304 -7 562 250 95 25 chr11 60178771 60178971 -88604501 + MIR SINE MIR 16 229 -33 210 331 121 0 chr11 60180476 60180600 -88602872 - MIR SINE MIR -116 146 8 287 269 134 17 chr11 60180889 60181008 -88602464 + MIR SINE MIR 13 145 -117 372 303 104 64 chr11 60182265 60182564 -88600908 + L2 LINE L2 2924 3239 -33 1836 141 35 35 chr11 60182564 60182939 -88600533 + THE1C LTR MaLR 1 375 0 372 303 104 64 chr11 60182939 60182966 -88600506 + L2 LINE L2 3239 3263 -9 999 223 145 31 chr11 60182970 60183329 -88600143 + L1MEc LINE L1 36 435 -5961 6187 217 40 32 chr11 60183340 60184286 -88599186 + L1MEc LINE L1 494 1430 -4966 2146 133 3 0 chr11 60184286 60184580 -88598892 + AluJo SINE Alu 1 295 -17 6187 217 40 32 chr11 60184580 60184663 -88598809 + L1MEc LINE L1 1430 1511 -4885 1717 185 0 52 chr11 60184663 60184992 -88598480 + AluJo SINE Alu 1 312 0 6187 217 40 32 chr11 60184992 60185768 -88597704 + L1MEc LINE L1 1511 2319 -4077 2061 126 17 10 chr11 60185768 60186069 -88597403 + AluSx SINE Alu 1 303 -9 6187 217 40 32 chr11 60186069 60186141 -88597331 + L1MEc LINE L1 2319 2389 -4007 4914 166 16 9 chr11 60186196 60187100 -88596372 - L1MB3 LINE L1 -20 6163 5254 1563 251 62 19 chr11 60187119 60187208 -88596264 + L1MEc LINE L1 2389 2473 -3742 2119 180 65 0 chr11 60187208 60187608 -88595864 + MSTB LTR MaLR 1 426 0 1563 251 62 19 chr11 60187608 60188001 -88595471 + L1MEc LINE L1 2473 2892 -3323 295 267 93 53 chr11 60188721 60188871 -88594601 + MER5A DNA MER1_type 6 161 -28 1143 66 0 7 chr11 60188977 60189113 -88594359 + AluSq/x SINE Alu 1 135 -178 719 22 0 0 chr11 60189113 60189204 -88594268 + AluYa5/8 SINE Alu 216 306 -4 1536 63 5 0 chr11 60189204 60189393 -88594079 + AluSx SINE Alu 119 308 -2 399 289 128 11 chr11 60189393 60189573 -88593899 + MIR SINE MIR 59 259 -3 276 297 43 36 chr11 60190369 60190528 -88592944 + MIR SINE MIR 19 175 -55 207 272 0 35 chr11 60190772 60190886 -88592586 + (CCG)n Simple_repeat Simple_repeat 3 112 0 490 188 90 5 chr11 60191462 60191624 -88591848 + LTR54B LTR ERV1 185 387 -111 447 200 53 0 chr11 60191625 60191720 -88591752 + MER57A-int LTR ERV1 7437 7536 -1 861 125 188 0 chr11 60191726 60191886 -88591586 + MER57A LTR ERV1 11 200 -203 2096 168 76 12 chr11 60191925 60192347 -88591125 - LTR45B LTR ERV1 -40 449 1 287 177 0 51 chr11 60192347 60192424 -88591048 + MER57A LTR ERV1 202 303 -131 922 133 0 8 chr11 60192431 60192559 -88590913 - FLAM_C SINE Alu -16 127 1 805 192 0 0 chr11 60192561 60192717 -88590755 + MER57A LTR ERV1 248 403 0 2526 75 3 0 chr11 60192948 60193255 -88590217 - AluSq SINE Alu -5 308 1 701 194 101 55 chr11 60193380 60193597 -88589875 + MLT1J LTR MaLR 258 484 -27 187 286 159 32 chr11 60194341 60194467 -88589005 - L2 LINE L2 -1 3312 3171 2218 117 3 0 chr11 60194799 60195099 -88588373 - AluY SINE Alu -10 301 1 8119 41 3 10 chr11 60195239 60196791 -88586681 - SVA Other Other -800 1386 1 285 89 0 0 chr11 60196794 60196839 -88586633 + (GGGAGA)n Simple_repeat Simple_repeat 5 49 0 672 293 37 46 chr11 60196931 60197383 -88586089 + MLT1J LTR MaLR 5 511 0 2119 108 0 7 chr11 60197444 60197732 -88585740 + AluSx SINE Alu 14 299 -13 712 199 136 30 chr11 60198090 60198326 -88585146 + MLT1I LTR MaLR 108 368 -41 1328 246 78 34 chr11 60198379 60198752 -88584720 + MLT1J LTR MaLR 39 439 -72 2278 80 0 18 chr11 60198752 60199065 -88584407 - AluSc SINE Alu 0 308 1 1328 246 78 34 chr11 60199065 60199136 -88584336 + MLT1J LTR MaLR 439 505 -6 811 241 40 70 chr11 60199346 60199645 -88583827 - LTR16A1 LTR ERVL 0 457 168 812 160 0 0 chr11 60199894 60200025 -88583447 - FLAM_A SINE Alu 0 133 3 2321 119 3 0 chr11 60200578 60200889 -88582583 + AluSx SINE Alu 1 312 0 1020 163 0 0 chr11 60201239 60201405 -88582067 - FRAM SINE Alu 0 166 1 319 377 15 15 chr11 60201695 60201894 -88581578 - L3 LINE CR1 -180 1397 1199 893 313 80 8 chr11 60202274 60202648 -88580824 + MLT1I LTR MaLR 7 407 -2 230 298 37 62 chr11 60202706 60202867 -88580605 + L2 LINE L2 2925 3081 -191 415 292 60 0 chr11 60202941 60203126 -88580346 - MER91A DNA MER1_type 0 196 1 633 274 38 0 chr11 60203318 60203475 -88579997 + MIR SINE MIR 9 171 -91 399 246 95 0 chr11 60203557 60203683 -88579789 - L2 LINE L2 -252 3061 2924 211 349 93 8 chr11 60204873 60205002 -88578470 + MIR3 SINE MIR 17 156 -52 240 294 69 0 chr11 60205057 60205159 -88578313 + MER117 DNA MER1_type 52 160 -37 2039 129 31 0 chr11 60206363 60206649 -88576823 - AluSx SINE Alu -16 296 2 30 59 0 0 chr11 60206660 60206711 -88576761 + AT_rich Low_complexity Low_complexity 1 51 0 23 0 0 0 chr11 60206771 60206794 -88576678 + AT_rich Low_complexity Low_complexity 1 23 0 229 230 40 61 chr11 60206902 60207050 -88576422 - L1MC4 LINE L1 -288 7754 7610 2387 78 10 0 chr11 60207051 60207345 -88576127 + AluSq SINE Alu 1 297 -16 2448 139 21 58 chr11 60207411 60207783 -88575689 + L1MC1 LINE L1 5455 5808 -525 1983 156 0 25 chr11 60207783 60208097 -88575375 + AluJb SINE Alu 1 306 -6 2448 139 21 58 chr11 60208097 60208192 -88575280 + L1MC1 LINE L1 5808 5905 -428 478 156 10 10 chr11 60208196 60208292 -88575180 - L1MA5 LINE L1 -15 6285 6190 2610 150 17 32 chr11 60208293 60208361 -88575111 - L1MA5 LINE L1 -573 5727 5659 2465 86 3 10 chr11 60208361 60208675 -88574797 - AluSp SINE Alu -1 312 1 2610 150 17 32 chr11 60208675 60209421 -88574051 - L1MA5 LINE L1 -641 5659 4903 1847 115 8 4 chr11 60209421 60209674 -88573798 - AluSq SINE Alu -59 254 1 1409 127 213 16 chr11 60209675 60209919 -88573553 - AluSx SINE Alu -19 293 2 2610 150 17 32 chr11 60209919 60209995 -88573477 - L1MA5 LINE L1 -1396 4904 4849 2271 145 8 49 chr11 60209998 60210179 -88573293 + L1MC1 LINE L1 5880 6067 -266 2286 102 0 0 chr11 60210179 60210463 -88573009 - AluSq SINE Alu -29 284 1 2271 145 8 49 chr11 60210463 60210749 -88572723 + L1MC1 LINE L1 6067 6328 -5 335 291 22 22 chr11 60211034 60211168 -88572304 - L1MC4 LINE L1 -787 7255 7122 809 236 0 12 chr11 60211169 60211369 -88572103 - AluJb SINE Alu 0 318 121 2138 143 0 0 chr11 60211466 60211759 -88571713 - AluSx SINE Alu -19 293 1 341 259 69 53 chr11 60211782 60211913 -88571559 - L1MC5 LINE L1 -809 7152 7020 1830 151 10 23 chr11 60211982 60212286 -88571186 + AluJb SINE Alu 1 300 -12 362 232 11 21 chr11 60212868 60212963 -88570509 + Charlie8 DNA MER1_type 56 149 -2268 779 172 6 43 chr11 60213011 60213174 -88570298 + MER21A LTR ERV1 9 165 -766 * 1284 173 88 0 chr11 60213173 60213422 -88570050 + MER39 LTR ERV1 219 489 -218 1253 131 78 0 chr11 60213423 60213614 -88569858 - AluSg/x SINE Alu -18 294 89 1822 155 3 3 chr11 60213773 60214057 -88569415 + AluSx SINE Alu 14 297 -15 886 137 0 8 chr11 60214057 60214082 -88569390 + AluSq SINE Alu 14 321 0 880 154 0 7 chr11 60214210 60214353 -88569119 + FRAM SINE Alu 28 169 -7 266 295 96 30 chr11 60214864 60214940 -88568532 + L1ME LINE L1 5522 5592 -529 2431 82 3 3 chr11 60214940 60215245 -88568227 + AluSp SINE Alu 1 305 -8 266 295 96 30 chr11 60215245 60215334 -88568138 + L1ME LINE L1 5592 5698 -423 899 112 0 15 chr11 60215476 60215610 -88567862 - FLAM_C SINE Alu -1 132 1 1867 171 9 22 chr11 60215613 60215929 -88567543 - AluJo SINE Alu 0 312 1 350 220 73 18 chr11 60216006 60216115 -88567357 + L1MC4 LINE L1 7759 7873 -169 450 307 39 13 chr11 60216115 60216268 -88567204 + MIR SINE MIR 14 170 -92 732 228 12 12 chr11 60216286 60216457 -88567015 + L1MB7 LINE L1 6014 6184 0 314 267 23 0 chr11 60216478 60216564 -88566908 + MIR SINE MIR 148 235 -27 2555 62 0 3 chr11 60216580 60216888 -88566584 - AluY SINE Alu -4 307 1 27 49 0 0 chr11 60217363 60217404 -88566068 + AT_rich Low_complexity Low_complexity 1 41 0 1144 148 6 0 chr11 60217509 60217685 -88565787 - AluSg/x SINE Alu -3 307 131 188 0 74 0 chr11 60217685 60217712 -88565760 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2151 103 0 24 chr11 60217712 60218002 -88565470 - AluSg SINE Alu -27 283 1 1792 155 24 14 chr11 60218358 60218654 -88564818 - AluJo SINE Alu -12 300 2 2371 99 0 0 chr11 60218675 60218969 -88564503 + AluSq SINE Alu 1 294 -19 678 284 88 14 chr11 60219092 60219388 -88564084 + L2 LINE L2 2991 3308 -5 1849 143 22 80 chr11 60219479 60219544 -88563928 - MLT1B LTR MaLR 0 390 323 2013 146 13 29 chr11 60219544 60219859 -88563613 + AluJb SINE Alu 2 311 -1 1849 143 22 80 chr11 60219859 60220079 -88563393 - MLT1B LTR MaLR -67 323 92 2342 102 0 3 chr11 60220079 60220384 -88563088 - AluSx SINE Alu -8 304 1 1849 143 22 80 chr11 60220384 60220461 -88563011 - MLT1B LTR MaLR -298 92 51 3725 103 54 20 chr11 60220461 60221073 -88562399 - LTR10E LTR ERV1 0 633 1 1849 143 22 80 chr11 60221073 60221122 -88562350 - MLT1B LTR MaLR -339 51 1 628 182 35 71 chr11 60221162 60221360 -88562112 + L1MC4 LINE L1 6980 7170 -872 1372 190 119 4 chr11 60221364 60221633 -88561839 + AluSp SINE Alu 1 300 -13 397 94 0 0 chr11 60221639 60221692 -88561780 + AluSg/x SINE Alu 198 250 -52 1315 150 32 14 chr11 60221692 60221726 -88561746 + AluSg/x SINE Alu 85 117 -195 240 35 0 0 chr11 60221726 60221755 -88561717 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 1315 150 32 14 chr11 60221755 60221940 -88561532 + AluSg/x SINE Alu 117 308 -4 1363 213 19 126 chr11 60221941 60222473 -88560999 + L1MC4 LINE L1 7503 8091 49 297 0 0 0 chr11 60222473 60222506 -88560966 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1816 109 0 8 chr11 60222508 60222755 -88560717 - AluSx SINE Alu -30 282 38 1363 213 19 126 chr11 60222755 60222806 -88560666 + L1MC4 LINE L1 7971 8026 -16 1969 147 7 7 chr11 60222807 60223107 -88560365 - AluJb SINE Alu -12 300 1 195 250 0 0 chr11 60223623 60223671 -88559801 - L2 LINE L2 -316 2956 2909 2438 107 0 0 chr11 60224022 60224332 -88559140 - AluSg SINE Alu 0 310 1 287 231 15 0 chr11 60225816 60225881 -88557591 + L1ME3A LINE L1 5629 5694 -476 2116 148 0 0 chr11 60225881 60226185 -88557287 + AluJb SINE Alu 1 304 -8 1079 141 5 50 chr11 60226192 60226282 -88557190 + L1MA5A LINE L1 6088 6181 -116 2121 107 7 17 chr11 60226282 60226580 -88556892 + AluSx SINE Alu 1 295 -17 1079 141 5 50 chr11 60226580 60226709 -88556763 + L1MA5A LINE L1 6181 6297 0 582 231 8 0 chr11 60226710 60226827 -88556645 + FLAM_C SINE Alu 1 118 -25 1413 256 30 38 chr11 60226859 60227356 -88556116 + L1ME3A LINE L1 5678 6170 0 244 202 164 19 chr11 60227554 60227658 -88555814 + L1ME4a LINE L1 6003 6121 0 335 308 50 17 chr11 60228357 60228477 -88554995 + MIR3 SINE MIR 40 163 -45 1708 244 109 24 chr11 60228720 60229260 -88554212 - MLT1E LTR MaLR -7 586 1 229 186 16 85 chr11 60229874 60230003 -88553469 + (CCCA)n Simple_repeat Simple_repeat 2 121 0 206 219 0 0 chr11 60230283 60230324 -88553148 + (ATG)n Simple_repeat Simple_repeat 3 43 0 454 244 170 0 chr11 60230328 60230463 -88553009 - MIR SINE MIR -30 232 75 580 263 71 59 chr11 60230596 60230874 -88552598 + MER102b DNA MER1_type 2 292 -49 2040 102 11 3 chr11 60231741 60232025 -88551447 + AluSx SINE Alu 9 294 -18 233 213 0 0 chr11 60232111 60232158 -88551314 - L1ME4a LINE L1 -72 6049 6003 203 274 0 0 chr11 60232161 60232212 -88551260 + (CATATA)n Simple_repeat Simple_repeat 3 53 0 361 227 27 109 chr11 60232214 60232434 -88551038 - L1MC4a LINE L1 -1914 5894 5693 234 291 101 0 chr11 60232498 60232577 -88550895 + MIR3 SINE MIR 113 199 -9 242 128 0 0 chr11 60233133 60233172 -88550300 - L2 LINE L2 -11 3261 3223 183 0 0 0 chr11 60234328 60234353 -88549119 + L2 LINE L2 3030 3054 -218 205 273 78 13 chr11 60234763 60234840 -88548632 + MIR SINE MIR 87 168 -94 241 226 333 0 chr11 60234855 60234948 -88548524 + MIR SINE MIR 100 223 -39 232 205 0 0 chr11 60235006 60235045 -88548427 + L2 LINE L2 3255 3293 -20 26 0 0 0 chr11 60235266 60235292 -88548180 + AT_rich Low_complexity Low_complexity 1 26 0 1829 167 0 7 chr11 60235295 60235583 -88547889 - AluJb SINE Alu -26 286 1 499 205 127 147 chr11 60236101 60236209 -88547263 + MER34C LTR ERV1 3 112 -430 1811 144 7 31 chr11 60236209 60236501 -88546971 + AluJo SINE Alu 12 296 -16 499 205 127 147 chr11 60236501 60236928 -88546544 + MER34C LTR ERV1 112 527 -15 494 281 86 19 chr11 60237126 60237336 -88546136 + MIR SINE MIR 20 243 -19 30 100 0 0 chr11 60237389 60237489 -88545983 + AT_rich Low_complexity Low_complexity 1 100 0 309 151 19 0 chr11 60237489 60237542 -88545930 + AluJ/FLAM SINE Alu 44 97 -205 307 83 0 21 chr11 60237697 60237745 -88545727 - FLAM_A SINE Alu -10 123 77 1653 113 0 0 chr11 60237745 60237957 -88545515 - AluSx SINE Alu -100 212 1 470 281 16 68 chr11 60238271 60238463 -88545009 + MIR SINE MIR 43 224 -38 283 185 19 0 chr11 60238643 60238697 -88544775 + Tigger5 DNA MER2_type 1 55 -2268 533 169 0 0 chr11 60238704 60238793 -88544679 + Tigger5 DNA MER2_type 2234 2322 -1 214 296 148 0 chr11 60238959 60239040 -88544432 - MIR SINE MIR -149 113 21 498 114 0 0 chr11 60239391 60239470 -88544002 + (CACCAT)n Simple_repeat Simple_repeat 3 81 0 660 241 78 21 chr11 60239482 60239673 -88543799 - MIR SINE MIR -41 221 20 463 262 33 0 chr11 60239844 60239966 -88543506 + MIR3 SINE MIR 81 206 -2 567 197 23 15 chr11 60240988 60241120 -88542352 - MER46C DNA MER2_type -143 195 63 624 248 19 6 chr11 60242150 60242311 -88541161 - MIR SINE MIR -50 212 50 756 235 203 0 chr11 60242641 60242922 -88540550 + MER46C DNA MER2_type 1 338 0 215 276 81 16 chr11 60242925 60243048 -88540424 + L2 LINE L2 2709 2839 -475 727 280 41 57 chr11 60243060 60243428 -88540044 + L2 LINE L2 2951 3312 -1 661 248 42 101 chr11 60243911 60244175 -88539297 + L2 LINE L2 2912 3143 -170 2521 80 0 0 chr11 60244175 60244476 -88538996 - AluSx SINE Alu -11 301 1 661 248 42 101 chr11 60244476 60244638 -88538834 + L2 LINE L2 3143 3313 0 656 216 97 40 chr11 60244795 60245011 -88538461 - MIR SINE MIR -14 248 25 274 337 30 18 chr11 60245417 60245586 -88537886 + MIR SINE MIR 15 185 -77 288 211 6 22 chr11 60246158 60246338 -88537134 + (CA)n Simple_repeat Simple_repeat 1 177 0 465 250 6 12 chr11 60246353 60246525 -88536947 + (CA)n Simple_repeat Simple_repeat 2 172 0 191 229 0 9 chr11 60246544 60246653 -88536819 + (CA)n Simple_repeat Simple_repeat 1 108 0 284 172 0 32 chr11 60246683 60246776 -88536696 + (CA)n Simple_repeat Simple_repeat 1 90 0 320 274 147 0 chr11 60246989 60247084 -88536388 - MIR SINE MIR -55 153 45 198 305 53 11 chr11 60247269 60247364 -88536108 + L3 LINE CR1 1413 1511 -66 2375 131 13 49 chr11 60247573 60247857 -88535615 - L1MC1 LINE L1 -5 6328 6066 2286 102 0 0 chr11 60247857 60248141 -88535331 + AluSq SINE Alu 1 284 -29 2375 131 13 49 chr11 60248141 60248322 -88535150 - L1MC1 LINE L1 -267 6066 5880 2508 155 25 18 chr11 60248325 60248401 -88535071 + L1M1 LINE L1 4849 4923 -1377 1426 131 213 16 chr11 60248401 60248645 -88534827 + AluSx SINE Alu 2 293 -19 1833 119 8 4 chr11 60248646 60248899 -88534573 + AluSq SINE Alu 1 254 -59 2508 155 25 18 chr11 60248899 60249543 -88533929 + L1M1 LINE L1 4922 5574 -726 180 111 0 0 chr11 60249780 60249807 -88533665 + (A)n Simple_repeat Simple_repeat 1 27 0 187 286 159 32 chr11 60250296 60250422 -88533050 - L2 LINE L2 -1 3312 3171 2200 118 3 16 chr11 60250735 60251050 -88532422 - AluY SINE Alu 0 311 1 8044 43 3 10 chr11 60251190 60252742 -88530730 - SVA Other Other -800 1385 1 306 67 0 0 chr11 60252745 60252790 -88530682 + (GGGAGA)n Simple_repeat Simple_repeat 5 49 0 667 293 37 46 chr11 60252882 60253334 -88530138 + MLT1J LTR MaLR 5 511 0 2242 103 3 10 chr11 60253395 60253696 -88529776 + AluSp SINE Alu 14 312 -1 418 183 0 0 chr11 60253696 60253767 -88529705 + L1MA5 LINE L1 5660 5730 -570 478 156 10 10 chr11 60253767 60253861 -88529611 + L1MA5 LINE L1 6190 6285 -15 2543 135 22 41 chr11 60253865 60253952 -88529520 - L1MC1 LINE L1 -428 5905 5818 1991 152 0 31 chr11 60253952 60254274 -88529198 - AluJb SINE Alu 0 312 1 2543 135 22 41 chr11 60254274 60254646 -88528826 - L1MC1 LINE L1 -515 5818 5455 2378 78 10 0 chr11 60254711 60255004 -88528468 - AluSq SINE Alu -17 296 1 229 230 40 61 chr11 60255005 60255153 -88528319 + L1MC4 LINE L1 7610 7754 -288 212 175 16 0 chr11 60255211 60255274 -88528198 + (TA)n Simple_repeat Simple_repeat 1 64 0 27 29 0 0 chr11 60255355 60255389 -88528083 + AT_rich Low_complexity Low_complexity 1 34 0 2084 129 28 0 chr11 60255400 60255687 -88527785 + AluSx SINE Alu 2 296 -16 240 294 69 0 chr11 60256891 60256993 -88526479 - MER117 DNA MER1_type -37 160 52 211 349 93 8 chr11 60257048 60257177 -88526295 - MIR3 SINE MIR -52 156 17 399 246 95 0 chr11 60258367 60258493 -88524979 + L2 LINE L2 2924 3061 -252 633 274 38 0 chr11 60258575 60258732 -88524740 - MIR SINE MIR -91 171 9 415 292 60 0 chr11 60258924 60259109 -88524363 + MER91A DNA MER1_type 1 196 0 230 298 37 62 chr11 60259183 60259344 -88524128 - L2 LINE L2 -191 3081 2925 906 310 80 8 chr11 60259402 60259776 -88523696 - MLT1I LTR MaLR -2 407 7 278 388 10 20 chr11 60260156 60260357 -88523115 + L3 LINE CR1 1199 1397 -180 1020 163 0 0 chr11 60260647 60260813 -88522659 + FRAM SINE Alu 1 166 0 2321 119 3 0 chr11 60261163 60261474 -88521998 - AluSx SINE Alu 0 312 1 812 160 0 0 chr11 60262027 60262158 -88521314 + FLAM_A SINE Alu 3 133 0 811 241 40 70 chr11 60262407 60262706 -88520766 + LTR16A1 LTR ERVL 168 457 0 1328 246 78 34 chr11 60262916 60262987 -88520485 - MLT1J LTR MaLR -6 505 439 2279 80 0 18 chr11 60262987 60263300 -88520172 + AluSc SINE Alu 1 308 0 1328 246 78 34 chr11 60263300 60263673 -88519799 - MLT1J LTR MaLR -72 439 39 723 198 144 29 chr11 60263726 60263969 -88519503 - MLT1I LTR MaLR -41 368 98 1536 163 12 0 chr11 60264344 60264589 -88518883 - AluSq SINE Alu -65 248 1 825 118 27 102 chr11 60267967 60268073 -88515399 + L1MC1 LINE L1 5726 5814 -519 1849 155 0 31 chr11 60268073 60268395 -88515077 + AluJb SINE Alu 1 312 0 825 118 27 102 chr11 60268395 60268474 -88514998 + L1MC1 LINE L1 5814 5897 -436 473 181 21 0 chr11 60268485 60268579 -88514893 - L1MA5 LINE L1 -15 6285 6190 804 124 0 112 chr11 60268581 60268647 -88514825 - L1M1 LINE L1 -575 5725 5653 1700 140 0 37 chr11 60268647 60268968 -88514504 - AluSx SINE Alu -1 311 3 804 124 0 112 chr11 60268968 60269070 -88514402 - L1M1 LINE L1 -647 5653 5576 632 264 35 11 chr11 60271500 60271734 -88511738 + L2 LINE L2 3073 3267 -5 325 325 68 62 chr11 60271736 60272028 -88511444 + L2 LINE L2 2979 3272 0 856 72 0 0 chr11 60272259 60272370 -88511102 - AluY SINE Alu -38 273 163 1660 163 7 3 chr11 60272385 60272668 -88510804 - AluJb SINE Alu -28 284 1 200 250 0 0 chr11 60273184 60273232 -88510240 - L2 LINE L2 -316 2956 2909 2302 107 0 0 chr11 60273583 60273893 -88509579 - AluSg SINE Alu 0 310 1 289 231 15 0 chr11 60275375 60275440 -88508032 + L1ME3A LINE L1 5629 5694 -476 1991 148 0 0 chr11 60275440 60275744 -88507728 + AluJb SINE Alu 1 304 -8 1214 143 5 32 chr11 60275751 60275841 -88507631 + L1MA5A LINE L1 6088 6179 -118 1990 113 7 17 chr11 60275841 60276143 -88507329 + AluSx SINE Alu 1 299 -13 1214 143 5 32 chr11 60276143 60276268 -88507204 + L1MA5A LINE L1 6179 6297 0 626 231 8 0 chr11 60276269 60276386 -88507086 + FLAM_C SINE Alu 1 118 -25 1445 256 30 38 chr11 60276418 60276915 -88506557 + L1ME3A LINE L1 5678 6170 0 301 313 14 6 chr11 60277920 60278028 -88505444 + MIR SINE MIR 44 153 -89 2057 221 103 22 chr11 60278277 60278819 -88504653 - MLT1E LTR MaLR -7 586 1 212 371 23 23 chr11 60278974 60279106 -88504366 + L2 LINE L2 3138 3269 -3 699 122 16 16 chr11 60279357 60279480 -88503992 + L1MA4A LINE L1 6181 6303 0 1575 185 14 7 chr11 60279481 60279767 -88503705 + AluJb SINE Alu 1 288 -24 207 69 0 0 chr11 60279877 60279906 -88503566 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 518 138 0 0 chr11 60280270 60280381 -88503091 - AluSg/x SINE Alu 0 310 217 5149 109 42 48 chr11 60280381 60281212 -88502260 - LTR12 LTR ERV1 0 826 1 1692 90 0 0 chr11 60281212 60281434 -88502038 - AluSq SINE Alu -91 222 1 329 300 111 28 chr11 60282129 60282309 -88501163 + L1M4 LINE L1 3107 3301 -2845 198 103 0 0 chr11 60283478 60283507 -88499965 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 236 206 0 44 chr11 60283516 60283584 -88499888 - L2 LINE L2 -19 3294 3230 244 275 14 29 chr11 60283920 60283989 -88499483 - L2 LINE L2 -575 2739 2672 397 335 30 34 chr11 60284070 60284303 -88499169 + MIR SINE MIR 14 245 -17 1052 272 80 45 chr11 60284309 60284758 -88498714 - L2 LINE L2 0 3313 2849 1800 102 8 0 chr11 60284789 60285043 -88498429 + AluSx SINE Alu 45 300 -12 423 284 93 38 chr11 60285768 60285951 -88497521 - L2 LINE L2 -7 3265 3073 575 155 0 0 chr11 60287850 60287934 -88495538 + AluS SINE Alu 2 85 -228 * 674 81 131 0 chr11 60287930 60288029 -88495443 - AluY SINE Alu -198 113 2 1088 189 47 24 chr11 60288266 60288478 -88494994 - MER20 DNA MER1_type -2 217 1 357 313 43 37 chr11 60288556 60288719 -88494753 + MIR SINE MIR 7 170 -92 446 282 9 0 chr11 60289492 60289602 -88493870 + MER81 DNA DNA 1 111 -3 253 296 112 32 chr11 60289842 60289967 -88493505 + L2 LINE L2 3179 3313 0 349 350 28 7 chr11 60290721 60290864 -88492608 + MIR SINE MIR 47 192 -70 372 212 68 83 chr11 60291059 60291191 -88492281 - MER5B DNA MER1_type -48 130 1 447 157 0 0 chr11 60292144 60292214 -88491258 + Alu SINE Alu 225 294 -16 2269 106 0 0 chr11 60292286 60292587 -88490885 + AluSx SINE Alu 1 301 -11 270 308 60 0 chr11 60292985 60293102 -88490370 - MER103 DNA DNA -13 153 30 394 309 70 15 chr11 60293286 60293665 -88489807 + L2 LINE L2 2632 3034 -238 2096 116 3 0 chr11 60293666 60293960 -88489512 + AluSq SINE Alu 1 295 -18 609 285 70 18 chr11 60293965 60294193 -88489279 + L1MC1 LINE L1 5616 5855 -1953 2168 100 3 0 chr11 60294193 60294483 -88488989 - AluSg SINE Alu -19 291 1 475 293 43 28 chr11 60295050 60295332 -88488140 + LTR16C LTR ERVL 146 491 0 311 300 39 31 chr11 60295421 60295551 -88487921 + MIR SINE MIR 19 149 -59 2098 122 0 3 chr11 60295637 60295931 -88487541 - AluSg SINE Alu -15 295 3 324 309 133 12 chr11 60296250 60296326 -88487146 - MIR SINE MIR -63 199 134 2178 101 10 0 chr11 60296326 60296623 -88486849 + AluSx SINE Alu 1 300 -12 324 309 133 12 chr11 60296623 60296711 -88486761 - MIR SINE MIR -128 134 15 1585 180 0 11 chr11 60297035 60297319 -88486153 + AluJo SINE Alu 14 294 -18 566 249 57 38 chr11 60297453 60297729 -88485743 + LTR16A LTR ERVL 18 395 -55 2136 99 0 3 chr11 60297729 60298023 -88485449 + AluSq SINE Alu 1 293 -20 566 249 57 38 chr11 60298023 60298062 -88485410 + LTR16A LTR ERVL 395 432 -18 2633 95 0 14 chr11 60298139 60298509 -88484963 + L1PA13 LINE L1 5799 6163 0 372 247 0 0 chr11 60299954 60300031 -88483441 + MIR SINE MIR 78 154 -108 924 214 23 33 chr11 60300073 60300288 -88483184 + L1MC1 LINE L1 6121 6333 0 1102 221 77 29 chr11 60300358 60300423 -88483049 - MER47A DNA MER2_type -1957 366 306 2122 101 3 10 chr11 60300423 60300721 -88482751 + AluSx SINE Alu 1 296 -16 1424 203 42 31 chr11 60300724 60300888 -88482584 - AluJb SINE Alu -12 290 120 270 81 0 0 chr11 60300888 60300925 -88482547 + (TTCTG)n Simple_repeat Simple_repeat 4 40 0 1424 203 42 31 chr11 60300925 60301046 -88482426 - AluJb SINE Alu -182 120 2 1102 221 77 29 chr11 60301046 60301325 -88482147 - MER47A DNA MER2_type -2018 305 1 1937 138 17 0 chr11 60301394 60301690 -88481782 + AluSx SINE Alu 3 303 -9 500 195 0 26 chr11 60301784 60301897 -88481575 + L1MB7 LINE L1 6075 6184 0 864 106 23 15 chr11 60301910 60302042 -88481430 + AluJ SINE Alu 1 133 -169 1174 126 11 6 chr11 60302097 60302279 -88481193 + AluJ SINE Alu 129 311 -1 2122 115 3 0 chr11 60302404 60302700 -88480772 - AluSx SINE Alu -15 297 1 399 256 122 57 chr11 60302757 60302973 -88480499 + MIR SINE MIR 20 245 -17 2196 161 39 32 chr11 60303252 60303484 -88479988 + L1MA7 LINE L1 5591 5820 -471 2098 105 11 0 chr11 60303484 60303770 -88479702 + AluSx SINE Alu 14 302 -10 2196 161 39 32 chr11 60303770 60304003 -88479469 + L1MA7 LINE L1 5820 6059 -232 260 148 33 0 chr11 60304006 60304067 -88479405 - Alu SINE Alu -1 301 239 363 276 23 0 chr11 60304122 60304209 -88479263 + MIR SINE MIR 58 146 -62 2460 52 0 3 chr11 60304389 60304696 -88478776 + AluY SINE Alu 1 306 -5 435 76 0 15 chr11 60305111 60305177 -88478295 + MADE1 DNA Mariner 16 80 0 246 230 288 14 chr11 60305231 60305370 -88478102 + MER5A DNA MER1_type 7 183 -6 2393 63 0 7 chr11 60305422 60305723 -88477749 + AluY SINE Alu 1 299 -12 2260 107 3 0 chr11 60305895 60306203 -88477269 + AluSx SINE Alu 1 309 -3 446 282 9 0 chr11 60307382 60307492 -88475980 + MER81 DNA DNA 1 111 -3 288 288 104 24 chr11 60307732 60307857 -88475615 + L2 LINE L2 3179 3313 0 347 350 28 7 chr11 60308611 60308754 -88474718 + MIR SINE MIR 47 192 -70 372 212 68 83 chr11 60308949 60309081 -88474391 - MER5B DNA MER1_type -48 130 1 417 155 0 14 chr11 60310033 60310104 -88473368 + Alu SINE Alu 225 294 -16 2277 106 0 0 chr11 60310176 60310478 -88472994 + AluSx SINE Alu 1 302 -10 295 299 60 0 chr11 60310876 60310993 -88472479 - MER103 DNA DNA -13 153 30 626 324 68 43 chr11 60311177 60311556 -88471916 + L2 LINE L2 2632 3051 -221 2170 97 0 10 chr11 60311556 60311856 -88471616 + AluSq SINE Alu 1 297 -16 626 324 68 43 chr11 60311856 60312082 -88471390 + L2 LINE L2 3051 3270 -2 217 300 0 14 chr11 60312294 60312364 -88471108 - L2 LINE L2 -4 3309 3241 372 214 71 20 chr11 60312775 60312873 -88470599 + L1ME3A LINE L1 5513 5615 -506 1933 115 3 39 chr11 60312873 60313185 -88470287 + AluSx SINE Alu 1 301 -11 779 120 8 0 chr11 60313185 60313310 -88470162 + L1MA5A LINE L1 6172 6297 0 611 208 13 54 chr11 60313311 60313460 -88470012 + FLAM_C SINE Alu 1 143 0 1530 254 24 34 chr11 60313461 60313957 -88469515 + L1ME3A LINE L1 5680 6170 0 239 202 164 19 chr11 60314158 60314262 -88469210 + L1ME4a LINE L1 6003 6121 0 340 321 58 26 chr11 60314936 60315107 -88468365 + MIR3 SINE MIR 10 163 -45 2040 220 107 22 chr11 60315324 60315864 -88467608 - MLT1E LTR MaLR -7 586 1 211 371 23 23 chr11 60316019 60316151 -88467321 + L2 LINE L2 3138 3269 -3 734 139 8 0 chr11 60316405 60316527 -88466945 + L1MA4A LINE L1 6181 6303 0 1709 171 14 7 chr11 60316528 60316821 -88466651 + AluJb SINE Alu 1 295 -17 198 71 0 0 chr11 60316924 60316952 -88466520 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 531 160 0 0 chr11 60317347 60317441 -88466031 - AluSg/x SINE Alu 0 309 216 1669 77 0 0 chr11 60317441 60317663 -88465809 - LTR12 LTR ERV1 0 714 493 1015 156 0 6 chr11 60317664 60317831 -88465641 - pTR5 LTR ERV1 -921 1517 1352 1662 104 0 0 chr11 60317839 60318061 -88465411 - AluSq SINE Alu -91 222 1 368 304 142 25 chr11 60318762 60319002 -88464470 + L1M4c LINE L1 947 1214 -5170 198 103 0 0 chr11 60320191 60320220 -88463252 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 236 206 0 44 chr11 60320229 60320297 -88463175 - L2 LINE L2 -19 3294 3230 244 275 14 29 chr11 60320633 60320702 -88462770 - L2 LINE L2 -575 2739 2672 397 335 30 34 chr11 60320783 60321016 -88462456 + MIR SINE MIR 14 245 -17 1025 273 83 42 chr11 60321022 60321469 -88462003 - L2 LINE L2 0 3313 2849 1800 102 8 0 chr11 60321500 60321754 -88461718 + AluSx SINE Alu 45 300 -12 423 284 93 38 chr11 60322480 60322663 -88460809 - L2 LINE L2 -7 3265 3073 575 155 0 0 chr11 60324561 60324645 -88458827 + AluS SINE Alu 2 85 -228 * 674 81 131 0 chr11 60324641 60324740 -88458732 - AluY SINE Alu -198 113 2 1084 189 47 24 chr11 60324977 60325189 -88458283 - MER20 DNA MER1_type -2 217 1 407 287 12 38 chr11 60325258 60325430 -88458042 + MIR SINE MIR 5 170 -75 446 282 9 0 chr11 60326201 60326311 -88457161 + MER81 DNA DNA 1 111 -3 288 288 104 24 chr11 60326551 60326676 -88456796 + L2 LINE L2 3179 3313 0 347 350 28 7 chr11 60327430 60327573 -88455899 + MIR SINE MIR 47 192 -70 372 212 68 83 chr11 60327768 60327900 -88455572 - MER5B DNA MER1_type -48 130 1 447 157 0 0 chr11 60328854 60328924 -88454548 + Alu SINE Alu 225 294 -16 2286 106 0 0 chr11 60328996 60329299 -88454173 + AluSx SINE Alu 1 303 -9 294 299 60 0 chr11 60329697 60329814 -88453658 - MER103 DNA DNA -13 153 30 394 309 70 15 chr11 60329998 60330377 -88453095 + L2 LINE L2 2632 3034 -238 2096 116 3 0 chr11 60330378 60330672 -88452800 + AluSq SINE Alu 1 295 -18 609 285 70 18 chr11 60330677 60330905 -88452567 + L1MC1 LINE L1 5616 5855 -1953 2168 100 3 0 chr11 60330905 60331195 -88452277 - AluSg SINE Alu -19 291 1 475 293 43 28 chr11 60331762 60332044 -88451428 + LTR16C LTR ERVL 146 491 0 311 300 39 31 chr11 60332133 60332263 -88451209 + MIR SINE MIR 19 149 -59 2098 122 0 3 chr11 60332349 60332643 -88450829 - AluSg SINE Alu -15 295 3 324 309 133 12 chr11 60332962 60333038 -88450434 - MIR SINE MIR -63 199 134 2178 101 10 0 chr11 60333038 60333335 -88450137 + AluSx SINE Alu 1 300 -12 324 309 133 12 chr11 60333335 60333423 -88450049 - MIR SINE MIR -128 134 15 1594 179 0 11 chr11 60333747 60334032 -88449440 + AluJo SINE Alu 14 295 -17 566 249 57 38 chr11 60334163 60334439 -88449033 + LTR16A LTR ERVL 18 395 -55 2114 102 0 3 chr11 60334439 60334733 -88448739 + AluSq SINE Alu 1 293 -20 566 249 57 38 chr11 60334733 60334772 -88448700 + LTR16A LTR ERVL 395 432 -18 2633 95 0 14 chr11 60334849 60335219 -88448253 + L1PA13 LINE L1 5799 6163 0 372 247 0 0 chr11 60336669 60336746 -88446726 + MIR SINE MIR 78 154 -108 924 214 23 33 chr11 60336788 60337003 -88446469 + L1MC1 LINE L1 6121 6333 0 370 123 53 0 chr11 60337073 60337130 -88446342 - Tigger5 DNA MER2_type 0 2323 2264 1707 116 94 4 chr11 60337138 60337415 -88446057 + AluSx SINE Alu 1 302 -10 2038 132 3 0 chr11 60338541 60338852 -88444620 + AluSq SINE Alu 2 313 0 248 316 31 10 chr11 60339358 60339456 -88444016 - L3 LINE CR1 -279 1298 1199 925 313 80 8 chr11 60339836 60340210 -88443262 + MLT1I LTR MaLR 7 407 -2 244 311 31 56 chr11 60340268 60340429 -88443043 + L2 LINE L2 2925 3081 -191 486 303 60 0 chr11 60340503 60340688 -88442784 - MER91A DNA MER1_type 0 196 1 636 274 38 0 chr11 60340880 60341037 -88442435 + MIR SINE MIR 9 171 -91 407 246 95 0 chr11 60341119 60341245 -88442227 - L2 LINE L2 -252 3061 2924 222 360 88 7 chr11 60342428 60342564 -88440908 + MIR3 SINE MIR 10 156 -52 267 320 65 20 chr11 60342568 60342721 -88440751 + MER117 DNA MER1_type 1 160 -37 1959 129 28 0 chr11 60343925 60344212 -88439260 - AluSx SINE Alu -16 296 2 28 29 0 0 chr11 60344223 60344258 -88439214 + AT_rich Low_complexity Low_complexity 1 35 0 234 0 0 0 chr11 60344338 60344364 -88439108 + (TA)n Simple_repeat Simple_repeat 1 26 0 363 303 60 51 chr11 60344379 60344613 -88438859 - L1MC5 LINE L1 -222 7739 7504 1093 103 6 6 chr11 60344614 60344770 -88438702 + AluSg SINE Alu 1 156 -154 3191 42 0 44 chr11 60344771 60345221 -88438251 - SVA Other Other -956 430 1 285 89 0 0 chr11 60345224 60345269 -88438203 + (GGGAGA)n Simple_repeat Simple_repeat 5 49 0 698 297 37 45 chr11 60345357 60345813 -88437659 + MLT1J LTR MaLR 1 511 0 1955 111 0 10 chr11 60345874 60346163 -88437309 + AluSx SINE Alu 14 299 -13 2091 130 0 3 chr11 60347440 60347741 -88435731 + AluSx SINE Alu 1 300 -12 409 340 63 32 chr11 60349219 60349558 -88433914 + L2 LINE L2 2531 2889 -383 1918 134 44 0 chr11 60349558 60349856 -88433616 - AluSq SINE Alu -2 311 1 409 340 63 32 chr11 60349856 60350025 -88433447 + L2 LINE L2 2889 3051 -221 405 322 46 0 chr11 60350025 60350177 -88433295 + L1MC4a LINE L1 5704 5862 -1946 837 143 8 8 chr11 60350239 60350372 -88433100 + FLAM_C SINE Alu 1 133 0 485 282 47 24 chr11 60350394 60350564 -88432908 + MIR SINE MIR 78 251 -11 1533 196 26 64 chr11 60350645 60350833 -88432639 + MLT1A2 LTR MaLR 1 168 -206 1807 120 30 43 chr11 60350833 60351134 -88432338 + AluSx SINE Alu 11 307 -5 1533 196 26 64 chr11 60351134 60351333 -88432139 + MLT1A2 LTR MaLR 168 373 -1 2118 113 0 0 chr11 60351919 60352211 -88431261 - AluSx SINE Alu -20 292 1 401 351 112 5 chr11 60352231 60352419 -88431053 + MIR SINE MIR 38 245 -17 2081 120 0 26 chr11 60353019 60353327 -88430145 - AluSx SINE Alu -12 300 1 341 343 67 11 chr11 60353484 60353682 -88429790 - MIR3 SINE MIR -40 222 2 1538 188 0 26 chr11 60353742 60354045 -88429427 - AluJo SINE Alu -17 295 1 746 168 9 0 chr11 60354106 60354219 -88429253 - FLAM_C SINE Alu -17 116 3 2207 108 3 0 chr11 60354232 60354537 -88428935 - AluSx SINE Alu -4 308 3 622 96 0 0 chr11 60356120 60356203 -88427269 - AluSg/x SINE Alu -14 296 214 2391 84 0 0 chr11 60357044 60357354 -88426118 + AluSg SINE Alu 1 310 0 262 241 87 22 chr11 60357366 60357486 -88425986 + MIR SINE MIR 61 144 -64 1856 128 43 16 chr11 60357573 60357877 -88425595 + AluSx SINE Alu 1 312 0 207 240 160 30 chr11 60357975 60358010 -88425462 + MER5A DNA MER1_type 77 106 -83 1745 176 0 3 chr11 60358010 60358312 -88425160 - AluJo SINE Alu -11 301 1 207 240 160 30 chr11 60358312 60358376 -88425096 + MER5A DNA MER1_type 106 189 0 208 111 56 0 chr11 60358557 60358593 -88424879 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 938 229 0 0 chr11 60358653 60358836 -88424636 + MER5A DNA MER1_type 2 184 -5 1902 129 3 17 chr11 60359869 60360171 -88423301 - AluSc SINE Alu -11 298 1 2344 53 0 0 chr11 60360918 60361229 -88422243 - AluY SINE Alu 0 311 1 1822 61 9 0 chr11 60361229 60361458 -88422014 - AluSp SINE Alu -16 297 67 1585 101 9 0 chr11 60361560 60361779 -88421693 - AluSp SINE Alu -92 221 1 2277 82 0 10 chr11 60361788 60362091 -88421381 - AluSx SINE Alu -12 300 1 252 294 68 103 chr11 60362455 60362772 -88420700 - L1ME4a LINE L1 -8 6113 5813 2132 104 13 0 chr11 60362772 60363071 -88420401 + AluSx SINE Alu 2 304 -8 252 294 68 103 chr11 60363071 60363178 -88420294 - L1ME4a LINE L1 -308 5813 5704 2200 87 0 10 chr11 60363183 60363483 -88419989 + AluSg SINE Alu 1 297 -13 207 0 0 0 chr11 60364143 60364166 -88419306 + (T)n Simple_repeat Simple_repeat 1 23 0 446 282 9 0 chr11 60365260 60365370 -88418102 + MER81 DNA DNA 1 111 -3 288 288 104 24 chr11 60365610 60365735 -88417737 + L2 LINE L2 3179 3313 0 347 350 28 7 chr11 60366489 60366632 -88416840 + MIR SINE MIR 47 192 -70 372 212 68 83 chr11 60366827 60366959 -88416513 - MER5B DNA MER1_type -48 130 1 458 145 0 0 chr11 60367911 60367980 -88415492 + AluS SINE Alu 226 294 -17 2217 98 10 0 chr11 60368052 60368357 -88415115 + AluSx SINE Alu 1 308 -4 295 299 60 0 chr11 60368759 60368876 -88414596 - MER103 DNA DNA -13 153 30 626 325 68 43 chr11 60369060 60369439 -88414033 + L2 LINE L2 2632 3051 -221 2170 97 0 10 chr11 60369439 60369739 -88413733 + AluSq SINE Alu 1 297 -16 626 325 68 43 chr11 60369739 60369965 -88413507 + L2 LINE L2 3051 3270 -2 217 300 0 14 chr11 60370177 60370247 -88413225 - L2 LINE L2 -4 3309 3241 372 214 71 20 chr11 60370658 60370756 -88412716 + L1ME3A LINE L1 5513 5615 -506 1933 115 3 39 chr11 60370756 60371068 -88412404 + AluSx SINE Alu 1 301 -11 779 120 8 0 chr11 60371068 60371193 -88412279 + L1MA5A LINE L1 6172 6297 0 611 208 13 54 chr11 60371194 60371343 -88412129 + FLAM_C SINE Alu 1 143 0 1237 279 26 35 chr11 60371344 60371806 -88411666 + L1ME3A LINE L1 5680 6137 -33 270 379 0 0 chr11 60371914 60372091 -88411381 + G-rich Low_complexity Low_complexity 1 177 0 291 302 6 38 chr11 60372117 60372276 -88411196 + G-rich Low_complexity Low_complexity 4 157 0 284 306 6 25 chr11 60372320 60372480 -88410992 + GA-rich Low_complexity Low_complexity 2 158 0 380 127 34 25 chr11 60372480 60372598 -88410874 + G-rich Low_complexity Low_complexity 1 119 0 558 315 23 23 chr11 60372896 60373115 -88410357 - MIR SINE MIR -24 238 20 531 242 21 63 chr11 60373136 60373326 -88410146 - MIR SINE MIR -44 218 37 1410 206 28 3 chr11 60373578 60373864 -88409608 - AluJo SINE Alu -15 297 5 217 337 11 11 chr11 60374338 60374433 -88409039 - L2 LINE L2 -32 3240 3146 531 237 216 10 chr11 60374632 60374826 -88408646 - LTR16A1 LTR ERVL -2 455 222 484 245 7 9 chr11 60375531 60376561 -88406911 + (TG)n Simple_repeat Simple_repeat 1 1028 0 295 250 9 43 chr11 60376564 60376680 -88406792 + (TATG)n Simple_repeat Simple_repeat 4 115 0 214 240 8 8 chr11 60376684 60376809 -88406663 + (TG)n Simple_repeat Simple_repeat 1 125 0 2193 94 0 3 chr11 60377202 60377501 -88405971 + AluSc SINE Alu 1 298 -11 1759 138 22 55 chr11 60377509 60377821 -88405651 + AluJb SINE Alu 1 302 -10 435 76 0 15 chr11 60378117 60378183 -88405289 + MADE1 DNA Mariner 16 80 0 246 230 288 14 chr11 60378237 60378376 -88405096 + MER5A DNA MER1_type 7 183 -6 2370 66 0 7 chr11 60378428 60378729 -88404743 + AluY SINE Alu 1 299 -12 2260 107 3 0 chr11 60378901 60379209 -88404263 + AluSx SINE Alu 1 309 -3 224 296 197 0 chr11 60379783 60379925 -88403547 - MIR SINE MIR -49 213 44 461 268 73 62 chr11 60380037 60380076 -88403396 - L1ME4a LINE L1 -2 6119 6082 2096 121 0 0 chr11 60380076 60380374 -88403098 - AluSx SINE Alu -14 298 1 461 268 73 62 chr11 60380374 60380514 -88402958 - L1ME4a LINE L1 -39 6082 5934 191 88 29 0 chr11 60380514 60380548 -88402924 + (TA)n Simple_repeat Simple_repeat 1 35 0 461 268 73 62 chr11 60380548 60380639 -88402833 - L1ME4a LINE L1 -187 5934 5845 230 202 38 55 chr11 60381745 60381928 -88401544 + (GCGTG)n Simple_repeat Simple_repeat 1 180 0 184 153 0 34 chr11 60381941 60382000 -88401472 + (CGGG)n Simple_repeat Simple_repeat 3 59 0 249 204 45 40 chr11 60382019 60382195 -88401277 + (GTGTG)n Simple_repeat Simple_repeat 2 178 0 619 154 98 32 chr11 60382595 60382718 -88400754 - FLAM_C SINE Alu 0 133 3 1929 101 23 29 chr11 60382725 60383031 -88400441 - AluSq SINE Alu -9 304 1 351 238 90 33 chr11 60383031 60383153 -88400319 + L3 LINE CR1 907 1035 -542 444 342 42 16 chr11 60383263 60383453 -88400019 + L3 LINE CR1 1373 1567 -10 24 32 0 0 chr11 60385089 60385120 -88398352 + GC_rich Low_complexity Low_complexity 1 31 0 1206 125 0 0 chr11 60385929 60386097 -88397375 - AluSg/x SINE Alu -11 299 132 1996 134 3 0 chr11 60386097 60386404 -88397068 - AluSp SINE Alu -4 309 2 800 237 75 18 chr11 60386405 60386684 -88396788 - MER47A DNA MER2_type -71 295 1 1905 142 17 0 chr11 60386753 60387049 -88396423 + AluSx SINE Alu 3 303 -9 1220 155 0 0 chr11 60387274 60387455 -88396017 - AluSx SINE Alu -131 181 1 306 356 67 11 chr11 60387612 60387810 -88395662 - MIR3 SINE MIR -40 222 2 1445 201 0 26 chr11 60387870 60388173 -88395299 - AluJo SINE Alu -17 295 1 746 168 9 0 chr11 60388234 60388347 -88395125 - FLAM_C SINE Alu -17 116 3 1671 158 3 13 chr11 60388360 60388671 -88394801 - AluSx SINE Alu -4 308 1 214 268 11 63 chr11 60389361 60389551 -88393921 + (GTGTG)n Simple_repeat Simple_repeat 1 180 0 215 161 49 37 chr11 60389614 60389695 -88393777 + (TAGTG)n Simple_repeat Simple_repeat 3 84 0 553 193 0 0 chr11 60392466 60392554 -88390918 + FRAM SINE Alu 59 146 -30 482 149 234 0 chr11 60392576 60392670 -88390802 - FLAM_A SINE Alu -17 116 1 463 232 51 29 chr11 60392670 60392808 -88390664 - MIR SINE MIR -108 154 14 546 219 8 23 chr11 60392835 60392963 -88390509 + MIR SINE MIR 12 137 -125 2038 117 0 3 chr11 60393021 60393312 -88390160 + AluSg SINE Alu 1 290 -20 186 343 58 23 chr11 60395533 60395705 -88387767 + L2 LINE L2 392 569 -2745 2490 277 215 26 chr11 60395809 60397785 -88385687 + L2 LINE L2 871 3251 -62 359 143 57 0 chr11 60397788 60397858 -88385614 + L1MA9 LINE L1 6239 6312 0 1621 103 0 5 chr11 60399663 60399886 -88383586 + AluSq SINE Alu 1 222 -91 1015 156 0 6 chr11 60399894 60400061 -88383411 + pTR5 LTR ERV1 1352 1517 -921 1661 81 0 0 chr11 60400062 60400284 -88383188 + LTR12 LTR ERV1 493 714 0 499 194 0 0 chr11 60400285 60400378 -88383094 + Alu SINE Alu 218 310 0 1512 188 14 11 chr11 60400912 60401199 -88382273 - AluJb SINE Alu -24 288 1 699 149 8 0 chr11 60401202 60401323 -88382149 - L1MA4A LINE L1 -1 6302 6181 212 371 23 23 chr11 60401574 60401706 -88381766 - L2 LINE L2 -3 3269 3138 1961 231 103 22 chr11 60401861 60402403 -88381069 + MLT1E LTR MaLR 1 586 -7 301 313 14 6 chr11 60402652 60402760 -88380712 - MIR SINE MIR -89 119 44 230 338 96 15 chr11 60404795 60404931 -88378541 + MIR3 SINE MIR 10 156 -52 312 331 60 16 chr11 60404935 60405119 -88378353 + MER117 DNA MER1_type 1 192 -5 1708 143 29 0 chr11 60406291 60406563 -88376909 - AluSx SINE Alu -16 296 17 363 367 112 5 chr11 60406600 60406788 -88376684 + MIR SINE MIR 38 245 -17 2285 71 7 0 chr11 60407047 60407342 -88376130 + AluSp SINE Alu 1 297 -16 2237 55 0 17 chr11 60407343 60407636 -88375836 + AluY SINE Alu 2 289 -22 1371 236 30 47 chr11 60407725 60408196 -88375276 - L1MC4 LINE L1 -77 7965 7503 1215 154 32 14 chr11 60408197 60408382 -88375090 - AluSg/x SINE Alu -4 308 117 240 35 0 0 chr11 60408382 60408411 -88375061 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 1215 154 32 14 chr11 60408411 60408445 -88375027 - AluSg/x SINE Alu -195 117 85 412 94 0 0 chr11 60408445 60408498 -88374974 - AluSp/q SINE Alu -63 250 198 1273 190 119 4 chr11 60408504 60408773 -88374699 - AluSp SINE Alu -13 300 1 624 182 35 71 chr11 60408777 60408975 -88374497 - L1MC4 LINE L1 -872 7170 6980 342 62 0 21 chr11 60409015 60409063 -88374409 + MLT1C LTR MaLR 1 47 -420 1547 222 95 18 chr11 60409064 60409578 -88373894 + LTR10E LTR ERV1 1 554 -79 208 111 56 0 chr11 60410665 60410701 -88372771 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 938 229 0 0 chr11 60410761 60410944 -88372528 + MER5A DNA MER1_type 2 184 -5 425 337 63 32 chr11 60413457 60413796 -88369676 + L2 LINE L2 2531 2889 -383 1874 135 47 0 chr11 60413796 60414093 -88369379 - AluSq SINE Alu -2 311 1 425 337 63 32 chr11 60414093 60414262 -88369210 + L2 LINE L2 2889 3051 -221 405 322 46 0 chr11 60414262 60414414 -88369058 + L1MC4a LINE L1 5704 5862 -1946 828 134 8 22 chr11 60414477 60414611 -88368861 + FLAM_C SINE Alu 2 133 -10 485 282 47 24 chr11 60414631 60414801 -88368671 + MIR SINE MIR 78 251 -11 574 163 56 107 chr11 60414882 60415060 -88368412 + MLT1A2 LTR MaLR 1 169 -205 902 105 8 15 chr11 60415060 60415193 -88368279 + FLAM_C SINE Alu 1 132 -1 279 307 90 24 chr11 60415335 60415424 -88368048 - L1ME LINE L1 -423 5698 5616 2275 85 3 3 chr11 60415424 60415729 -88367743 - AluSp SINE Alu -8 305 1 279 307 90 24 chr11 60415729 60415805 -88367667 - L1ME LINE L1 -505 5616 5522 2073 116 3 16 chr11 60416643 60416953 -88366519 + AluSc SINE Alu 1 306 -3 2251 81 7 0 chr11 60417611 60417907 -88365565 - AluSx SINE Alu -14 298 1 695 104 31 0 chr11 60417910 60418006 -88365466 - AluSq/x SINE Alu -179 134 36 198 340 181 11 chr11 60418018 60418206 -88365266 + L2 LINE L2 3014 3233 -39 777 241 241 31 chr11 60418349 60418616 -88364856 - L2 LINE L2 -5 3308 2962 1911 161 6 3 chr11 60418616 60418927 -88364545 - AluSx SINE Alu 0 312 1 777 241 241 31 chr11 60418927 60418978 -88364494 - L2 LINE L2 -351 2962 2923 714 265 70 14 chr11 60419642 60419857 -88363615 - MIR SINE MIR -19 243 17 259 274 67 119 chr11 60420237 60420335 -88363137 - L2 LINE L2 -1 3271 3169 2237 113 0 0 chr11 60420335 60420636 -88362836 - AluSx SINE Alu -11 301 1 259 274 67 119 chr11 60420636 60420822 -88362650 - L2 LINE L2 -103 3169 3002 761 298 67 102 chr11 60420992 60421317 -88362155 - L1ME4a LINE L1 0 6121 5813 2161 104 13 0 chr11 60421317 60421616 -88361856 + AluSx SINE Alu 2 304 -8 761 298 67 102 chr11 60421616 60421723 -88361749 - L1ME4a LINE L1 -308 5813 5704 1065 196 0 5 chr11 60421728 60421937 -88361535 + AluSg SINE Alu 1 208 -102 604 343 77 50 chr11 60422091 60422814 -88360658 - L1M2 LINE L1 -1181 1562 836 1714 158 20 3 chr11 60422814 60423112 -88360360 - AluSx SINE Alu -9 303 1 604 343 77 50 chr11 60423112 60423147 -88360325 - L1M2 LINE L1 -1907 836 803 638 194 101 55 chr11 60423237 60423454 -88360018 + MLT1J LTR MaLR 258 484 -27 204 286 159 32 chr11 60424198 60424324 -88359148 - L2 LINE L2 -1 3312 3171 2067 123 3 0 chr11 60424657 60424957 -88358515 - AluY SINE Alu -10 301 1 7397 50 3 10 chr11 60425097 60426651 -88356821 - SVA Other Other -800 1386 1 285 89 0 0 chr11 60426654 60426699 -88356773 + (GGGAGA)n Simple_repeat Simple_repeat 5 49 0 454 307 40 46 chr11 60426787 60427242 -88356230 + MLT1J LTR MaLR 1 511 0 2022 108 0 7 chr11 60427303 60427591 -88355881 + AluSx SINE Alu 14 299 -13 650 199 136 30 chr11 60427949 60428185 -88355287 + MLT1I LTR MaLR 108 368 -41 1189 244 74 36 chr11 60428239 60428611 -88354861 + MLT1J LTR MaLR 43 438 -73 2164 80 0 18 chr11 60428611 60428924 -88354548 - AluSc SINE Alu 0 308 1 1189 244 74 36 chr11 60428924 60428995 -88354477 + MLT1J LTR MaLR 438 505 -6 184 339 17 0 chr11 60429054 60429113 -88354359 - L2 LINE L2 -76 3196 3137 664 286 27 60 chr11 60429205 60429506 -88353966 - LTR16A1 LTR ERVL 0 457 167 861 160 0 0 chr11 60429756 60429887 -88353585 - FLAM_A SINE Alu 0 133 3 1910 139 4 0 chr11 60430452 60430733 -88352739 + AluSx SINE Alu 12 293 -19 504 286 0 0 chr11 60430870 60431029 -88352443 + AluJb SINE Alu 159 317 0 330 306 8 8 chr11 60431030 60431164 -88352308 + L1MC4 LINE L1 7122 7255 -787 1605 155 18 18 chr11 60431449 60431727 -88351745 - L1MC1 LINE L1 -5 6328 6051 587 315 93 47 chr11 60433181 60433650 -88349822 + L2 LINE L2 2351 2867 -405 2244 101 0 3 chr11 60433650 60433987 -88349485 - AluSx SINE Alu 0 312 1 587 315 93 47 chr11 60433987 60434189 -88349283 + L2 LINE L2 2867 3058 -214 201 74 0 0 chr11 60434387 60434414 -88349058 + (TGGA)n Simple_repeat Simple_repeat 1 27 0 364 238 64 0 chr11 60434425 60434551 -88348921 + MIR SINE MIR 2 142 -66 203 385 0 13 chr11 60435592 60435670 -88347802 + L2 LINE L2 3119 3195 -77 676 263 94 27 chr11 60436243 60436467 -88347005 + MIR SINE MIR 12 250 -12 2074 128 3 7 chr11 60437692 60437998 -88345474 - AluSx SINE Alu -7 305 1 632 250 48 24 chr11 60438158 60438366 -88345106 - L2 LINE L2 -2 3311 3099 528 265 83 0 chr11 60439309 60439500 -88343972 + MIR SINE MIR 43 253 -9 1938 142 14 3 chr11 60440594 60440889 -88342583 + AluJb SINE Alu 1 298 -14 325 324 137 18 chr11 60441011 60441230 -88342242 + MIR SINE MIR 13 257 -5 338 316 95 19 chr11 60441441 60441599 -88341873 + MIR SINE MIR 3 172 -90 819 198 37 10 chr11 60441816 60442136 -88341336 + MLT1A1 LTR MaLR 1 365 0 258 254 28 39 chr11 60443425 60443606 -88339866 + (CAGG)n Simple_repeat Simple_repeat 2 180 0 456 87 0 0 chr11 60444616 60444685 -88338787 - Alu SINE Alu -3 308 240 1235 171 136 26 chr11 60445774 60446038 -88337434 - AluJo SINE Alu -19 293 1 776 201 0 14 chr11 60446075 60446214 -88337258 - FRAM SINE Alu -39 137 1 250 272 130 11 chr11 60447634 60447726 -88335746 - MIR SINE MIR -14 248 146 2192 109 0 3 chr11 60447740 60448042 -88335430 - AluSg SINE Alu -9 301 1 569 228 8 16 chr11 60448100 60448227 -88335245 - MIR SINE MIR -125 137 12 461 232 51 29 chr11 60448254 60448392 -88335080 + MIR SINE MIR 14 154 -108 488 149 234 0 chr11 60448392 60448486 -88334986 + FLAM_A SINE Alu 1 116 -17 1571 193 11 4 chr11 60448508 60448788 -88334684 - AluJo SINE Alu -30 282 1 1559 53 11 0 chr11 60448833 60449023 -88334449 + AluY SINE Alu 1 192 -119 1232 205 28 7 chr11 60449310 60449593 -88333879 - AluJb SINE Alu -23 289 1 535 288 79 2 chr11 60450685 60450916 -88332556 - MIR SINE MIR -9 253 5 548 248 63 29 chr11 60451817 60452023 -88331449 + L2 LINE L2 3099 3311 -2 2074 130 3 7 chr11 60452183 60452491 -88330981 + AluSx SINE Alu 1 307 -5 676 263 94 27 chr11 60453716 60453940 -88329532 - MIR SINE MIR -12 250 12 203 385 0 13 chr11 60454513 60454591 -88328881 - L2 LINE L2 -77 3195 3119 364 238 64 0 chr11 60455631 60455757 -88327715 - MIR SINE MIR -66 142 2 201 74 0 0 chr11 60455768 60455795 -88327677 + (TCCA)n Simple_repeat Simple_repeat 1 27 0 563 326 57 53 chr11 60455993 60456192 -88327280 - L2 LINE L2 -214 3058 2861 2898 3 0 0 chr11 60456192 60456510 -88326962 + AluYb8 SINE Alu 1 318 0 563 326 57 53 chr11 60456510 60456534 -88326938 - L2 LINE L2 -411 2861 2839 2214 104 0 3 chr11 60456534 60456871 -88326601 + AluSx SINE Alu 1 312 0 563 326 57 53 chr11 60456871 60457340 -88326132 - L2 LINE L2 -433 2839 2351 925 238 119 47 chr11 60457900 60458220 -88325252 + L2 LINE L2 2971 3313 0 424 326 50 6 chr11 60458451 60458632 -88324840 - MIR3 SINE MIR 0 208 20 218 364 106 21 chr11 60459331 60459398 -88324074 - L2 LINE L2 -14 3258 3198 1813 179 3 3 chr11 60459398 60459700 -88323772 + AluJb SINE Alu 4 305 -7 218 364 106 21 chr11 60459700 60460011 -88323461 - L2 LINE L2 -74 3198 2848 367 272 44 0 chr11 60460157 60460271 -88323201 + MIR3 SINE MIR 41 159 -49 527 167 216 83 chr11 60460669 60460745 -88322727 - MIR SINE MIR -12 250 185 2349 89 3 9 chr11 60460745 60461060 -88322412 + AluSp SINE Alu 1 313 0 527 167 216 83 chr11 60461060 60461187 -88322285 - MIR SINE MIR -77 185 20 393 258 92 0 chr11 60461515 60461635 -88321837 - MIR SINE MIR -87 175 45 285 252 126 17 chr11 60462618 60462737 -88320735 - MIR SINE MIR -118 144 13 325 184 50 38 chr11 60462887 60462982 -88320490 + MIR SINE MIR 64 153 -55 554 194 30 60 chr11 60465358 60465492 -88317980 - FLAM_A SINE Alu -2 131 2 2133 99 30 3 chr11 60465870 60466172 -88317300 + AluSx SINE Alu 1 310 -2 2280 114 3 0 chr11 60467926 60468234 -88315238 - AluSg SINE Alu 0 310 2 196 234 138 75 chr11 60468900 60468994 -88314478 - L2 LINE L2 -4 3309 3210 781 157 0 0 chr11 60469988 60470109 -88313363 + FLAM_A SINE Alu 22 142 0 355 271 158 15 chr11 60470109 60470242 -88313230 - MIR3 SINE MIR -27 181 30 205 238 0 48 chr11 60470827 60470890 -88312582 + CT-rich Low_complexity Low_complexity 3 62 0 939 108 0 81 chr11 60471065 60471213 -88312259 - FRAM SINE Alu -21 155 20 2403 84 3 3 chr11 60471260 60471559 -88311913 - AluSp SINE Alu -14 299 1 847 205 87 0 chr11 60471742 60471903 -88311569 + FAM SINE Alu 1 175 0 1906 142 7 20 chr11 60472721 60473016 -88310456 + AluJb SINE Alu 10 300 -12 344 262 48 0 chr11 60473601 60473685 -88309787 - L2 LINE L2 -37 3235 3148 483 230 138 35 chr11 60474266 60474440 -88309032 - MIR SINE MIR -4 258 67 1596 173 28 14 chr11 60475255 60475539 -88307933 + AluJo SINE Alu 12 299 -13 834 130 0 32 chr11 60475741 60475864 -88307608 + FLAM_A SINE Alu 5 123 -10 2262 116 3 3 chr11 60475925 60476236 -88307236 + AluSx SINE Alu 1 311 -1 293 295 68 14 chr11 60476246 60476524 -88306948 + L1 LINE L1 4208 4500 -1646 2043 124 3 16 chr11 60476696 60477010 -88306462 + AluSg SINE Alu 1 310 0 1840 176 0 3 chr11 60477140 60477442 -88306030 - AluJo SINE Alu -11 301 1 2462 85 0 3 chr11 60477546 60477852 -88305620 - AluSq SINE Alu -8 305 1 187 255 41 71 chr11 60478445 60478543 -88304929 + L3 LINE CR1 167 261 -1316 228 186 23 0 chr11 60478627 60478670 -88304802 - L2 LINE L2 0 3313 3270 562 135 0 0 chr11 60478680 60478769 -88304703 + AluSg/x SINE Alu 210 298 -14 189 157 100 57 chr11 60478907 60478977 -88304495 - MIR3 SINE MIR -134 74 2 1672 179 28 14 chr11 60478994 60479284 -88304188 - AluJo SINE Alu -18 294 1 369 207 10 10 chr11 60479419 60479608 -88303864 + CT-rich Low_complexity Low_complexity 1 189 0 203 240 25 8 chr11 60479645 60479766 -88303706 + CT-rich Low_complexity Low_complexity 3 125 0 617 180 55 31 chr11 60480047 60480175 -88303297 - FLAM_C SINE Alu 0 133 3 2023 116 23 23 chr11 60480182 60480484 -88302988 - AluSq SINE Alu -9 304 3 577 232 26 68 chr11 60481099 60481289 -88302183 - MIR SINE MIR -44 218 37 1507 206 28 3 chr11 60481541 60481827 -88301645 - AluJo SINE Alu -15 297 5 1121 178 0 0 chr11 60482747 60482938 -88300534 + AluSg/x SINE Alu 116 306 -6 372 283 124 28 chr11 60484386 60484531 -88298941 - MER5A DNA MER1_type 0 189 31 471 174 23 0 chr11 60484573 60484648 -88298824 + MER5A DNA MER1_type 1 80 -109 1797 144 3 41 chr11 60484648 60484862 -88298610 + AluSx SINE Alu 1 203 -109 2082 133 7 0 chr11 60484862 60485155 -88298317 + AluSq SINE Alu 2 296 -17 1797 144 3 41 chr11 60485155 60485232 -88298240 + AluSx SINE Alu 203 281 -31 225 241 35 0 chr11 60485281 60485368 -88298104 + MER5A DNA MER1_type 62 151 -38 314 198 93 23 chr11 60487510 60487596 -88295876 - L1MC5 LINE L1 -26 7935 7844 801 251 4 52 chr11 60488039 60488306 -88295166 - AluJb SINE Alu -1 311 58 207 295 36 9 chr11 60488605 60488717 -88294755 + (TGGG)n Simple_repeat Simple_repeat 1 115 0 314 221 18 53 chr11 60488951 60489064 -88294408 - FLAM_C SINE Alu -3 130 22 215 77 0 26 chr11 60490571 60490610 -88292862 + (TG)n Simple_repeat Simple_repeat 2 39 0 461 252 65 19 chr11 60491149 60491304 -88292168 + MER5B DNA MER1_type 7 168 -10 527 247 78 24 chr11 60491739 60491905 -88291567 - MER58B DNA MER1_type 0 341 167 1035 0 90 0 chr11 60492079 60492234 -88291238 + (TTATG)n Simple_repeat Simple_repeat 2 170 0 2194 107 0 0 chr11 60492234 60492515 -88290957 - AluSg SINE Alu -29 281 1 319 191 177 0 chr11 60492519 60492601 -88290871 + MIR SINE MIR 60 156 -62 1105 202 46 26 chr11 60494933 60495240 -88288232 - L1MA6 LINE L1 -1 6299 5987 762 148 7 148 chr11 60495280 60495407 -88288065 - L1M4c LINE L1 -3102 3280 3137 2325 100 7 0 chr11 60495407 60495716 -88287756 - AluSq SINE Alu -2 311 1 762 148 7 148 chr11 60495716 60495731 -88287741 - L1M4c LINE L1 -3245 3137 3122 849 142 0 15 chr11 60495731 60495865 -88287607 - FLAM_C SINE Alu 0 133 2 762 148 7 148 chr11 60495865 60495998 -88287474 - L1M4c LINE L1 -3260 3122 3043 303 162 51 103 chr11 60495999 60496082 -88287390 - L1M4c LINE L1 -3900 2484 2398 180 0 0 0 chr11 60496082 60496102 -88287370 + (TTATG)n Simple_repeat Simple_repeat 2 21 0 2333 68 21 0 chr11 60496102 60496383 -88287089 - AluY SINE Alu -24 287 1 303 162 51 103 chr11 60496383 60496415 -88287057 - L1M4c LINE L1 -3984 2400 2374 1329 178 54 4 chr11 60496417 60496658 -88286814 + AluJb SINE Alu 45 297 -15 1233 181 107 52 chr11 60496668 60496994 -88286478 + MER2 DNA MER2_type 1 344 0 771 218 117 33 chr11 60496996 60497390 -88286082 - L1M4c LINE L1 -4025 2359 1933 2449 84 0 3 chr11 60497420 60497729 -88285743 - AluSc SINE Alu -1 308 1 277 300 23 39 chr11 60497970 60498100 -88285372 + MER5A DNA MER1_type 12 139 -50 * 450 261 17 9 chr11 60497987 60498102 -88285370 - MER5A DNA MER1_type -14 175 60 1012 141 103 0 chr11 60498110 60498294 -88285178 - MLT1B LTR MaLR 0 390 188 676 211 0 16 chr11 60498320 60498443 -88285029 - FLAM_A SINE Alu -12 121 1 1481 222 69 98 chr11 60498445 60498581 -88284891 - L1M4c LINE L1 -4523 1780 1641 2072 125 14 0 chr11 60498581 60498868 -88284604 - AluSx SINE Alu -21 291 1 1481 222 69 98 chr11 60498868 60499105 -88284367 - L1M4c LINE L1 -4662 1641 1398 2376 73 6 19 chr11 60499105 60499420 -88284052 - AluY SINE Alu 0 311 1 1481 222 69 98 chr11 60499420 60499441 -88284031 - L1M4c LINE L1 -4905 1398 1378 984 100 0 8 chr11 60499441 60499571 -88283901 - FLAM_C SINE Alu -4 129 1 1481 222 69 98 chr11 60499571 60499972 -88283500 - L1M4c LINE L1 -4925 1378 807 309 316 0 2 chr11 60500123 60500212 -88283260 - L1M3de LINE L1 -5226 665 314 2456 75 3 0 chr11 60500230 60500525 -88282947 + AluSp SINE Alu 1 296 -17 1016 289 98 59 chr11 60500635 60501247 -88282225 - L1M3d LINE L1 -5253 638 3 375 306 32 0 chr11 60501453 60501578 -88281894 + MIR SINE MIR 28 157 -62 1742 149 19 58 chr11 60501581 60501890 -88281582 - AluJb SINE Alu -15 297 1 332 121 0 0 chr11 60502262 60502312 -88281160 - MER57A LTR ERV1 -64 368 295 2314 114 3 0 chr11 60502581 60502887 -88280585 - AluSp SINE Alu -6 307 1 233 193 88 61 chr11 60502964 60503078 -88280394 - LTR67 LTR ERVL -2 555 439 1948 157 7 0 chr11 60503151 60503444 -88280028 + AluSq SINE Alu 1 295 -18 1166 257 159 16 chr11 60503487 60503934 -88279538 - MLT1J LTR MaLR 0 511 1 254 173 19 0 chr11 60504059 60504111 -88279361 + MER58 DNA MER1_type 2360 2412 -8 1320 189 21 18 chr11 60504114 60504400 -88279072 - L1ME1 LINE L1 -292 6669 6383 1847 120 40 60 chr11 60504403 60504702 -88278770 + AluSx SINE Alu 1 293 -19 2191 106 0 10 chr11 60504705 60505007 -88278465 + AluY SINE Alu 1 299 -12 1051 179 61 24 chr11 60505086 60505308 -88278164 - MER58B DNA MER1_type -2110 310 77 1495 149 82 11 chr11 60505308 60505577 -88277895 + AluJo SINE Alu 1 288 -24 1051 179 61 24 chr11 60505577 60505600 -88277872 - MER58B DNA MER1_type -2343 77 56 2201 95 35 0 chr11 60505641 60505926 -88277546 + AluSg SINE Alu 3 297 -13 371 191 79 22 chr11 60505974 60506063 -88277409 + L1ME1 LINE L1 5907 6000 -166 728 225 16 27 chr11 60506067 60506254 -88277218 - L1ME1 LINE L1 -652 6309 6125 2125 121 0 30 chr11 60506275 60506580 -88276892 - AluJb SINE Alu -16 296 1 260 160 77 15 chr11 60506581 60506655 -88276817 - L1ME1 LINE L1 -4612 2356 2262 442 188 133 8 chr11 60506662 60506790 -88276682 - L1ME1 LINE L1 -5184 1239 1096 * 1313 231 54 64 chr11 60506788 60507142 -88276330 - L1MCa LINE L1 -4853 2088 1732 1915 157 10 7 chr11 60507142 60507442 -88276030 - AluSx SINE Alu -11 301 1 1313 231 54 64 chr11 60507442 60507992 -88275480 - L1MCa LINE L1 -5209 1732 1140 1046 118 0 0 chr11 60508022 60508166 -88275306 - AluSg/x SINE Alu -35 275 132 2507 58 3 0 chr11 60508166 60508460 -88275012 - AluY SINE Alu -16 295 1 260 149 134 15 chr11 60508460 60508527 -88274945 - L1MCa LINE L1 -6069 354 280 1517 205 0 0 chr11 60508527 60508800 -88274672 + 7SLRNA srpRNA srpRNA 11 283 -37 2245 82 3 30 chr11 60508840 60509144 -88274328 + AluY SINE Alu 1 296 -15 830 234 19 19 chr11 60509147 60509408 -88274064 - L1MCa LINE L1 -6139 284 24 395 222 24 40 chr11 60509738 60509864 -88273608 + LTR67 LTR ERVL 432 555 -2 742 206 59 0 chr11 60509983 60510153 -88273319 - MER58A DNA MER1_type 0 224 45 445 302 78 5 chr11 60511657 60511849 -88271623 - MIR SINE MIR -55 207 2 459 258 192 0 chr11 60512042 60512209 -88271263 + MIR SINE MIR 53 251 -11 1580 144 23 4 chr11 60513949 60514212 -88269260 - AluSx SINE Alu -11 301 34 601 348 22 4 chr11 60514468 60514698 -88268774 + MIR SINE MIR 3 236 -26 762 237 89 25 chr11 60514709 60514945 -88268527 - MIR SINE MIR -10 252 2 2305 101 3 10 chr11 60515680 60515986 -88267486 + AluSx SINE Alu 1 304 -8 1629 138 65 52 chr11 60516432 60516598 -88266874 - AluJo SINE Alu -17 295 122 2268 72 24 7 chr11 60516598 60516889 -88266583 + AluSg SINE Alu 1 296 -14 1629 138 65 52 chr11 60516889 60517013 -88266459 - AluJo SINE Alu -190 122 1 735 228 243 18 chr11 60517150 60517422 -88266050 + MLT1H LTR MaLR 215 547 -2 2073 100 25 14 chr11 60517535 60517847 -88265625 - AluSx SINE Alu 0 315 1 463 342 27 11 chr11 60517960 60518144 -88265328 - MIR SINE MIR -10 252 66 2221 98 0 3 chr11 60519372 60519669 -88263803 + AluSx SINE Alu 1 296 -16 347 313 9 9 chr11 60519671 60519783 -88263689 + MLT1J2 LTR MaLR 78 189 -261 360 358 77 9 chr11 60520137 60520358 -88263114 + L2 LINE L2 1267 1502 -1812 2395 84 7 0 chr11 60520477 60520787 -88262685 - AluSx SINE Alu 0 312 1 937 343 143 6 chr11 60520797 60521611 -88261861 + L2 LINE L2 1750 2674 -640 2103 115 84 3 chr11 60521637 60521855 -88261617 - Tigger2a DNA MER2_type -2274 444 184 1164 150 177 41 chr11 60521855 60522121 -88261351 + AluJo SINE Alu 1 302 0 2103 115 84 3 chr11 60522121 60522258 -88261214 - Tigger2a DNA MER2_type -2534 184 60 366 175 0 0 chr11 60522272 60522329 -88261143 + AluJ/FLAM SINE Alu 2 58 -244 322 136 23 148 chr11 60522329 60522367 -88261105 - Tigger2a DNA MER2_type -2627 81 40 1625 164 3 57 chr11 60522367 60522518 -88260954 + AluJo SINE Alu 1 159 -153 2186 92 3 13 chr11 60522518 60522821 -88260651 + AluSq SINE Alu 1 300 -13 2349 61 7 16 chr11 60522821 60523131 -88260341 + AluY SINE Alu 1 307 -4 1625 164 3 57 chr11 60523131 60523296 -88260176 + AluJo SINE Alu 157 301 -11 322 136 23 148 chr11 60523296 60523345 -88260127 - Tigger2a DNA MER2_type -2668 40 5 202 354 30 0 chr11 60523351 60523450 -88260022 + L2 LINE L2 2698 2799 -515 1045 146 151 29 chr11 60523452 60523658 -88259814 - AluJb SINE Alu -81 231 1 1944 113 7 3 chr11 60523670 60523996 -88259476 - AluSx SINE Alu 0 327 1 2428 73 0 0 chr11 60524000 60524301 -88259171 - AluY SINE Alu -10 301 1 429 254 31 23 chr11 60524345 60524475 -88258997 + L2 LINE L2 3179 3309 -4 1958 122 10 14 chr11 60524476 60524770 -88258702 + AluSx SINE Alu 13 305 -7 302 280 67 0 chr11 60525512 60525587 -88257885 - MIR SINE MIR -163 99 20 458 256 43 47 chr11 60525606 60525817 -88257655 + MER113 DNA MER1_type? 8 217 -304 1669 131 43 32 chr11 60525941 60526223 -88257249 - AluJb SINE Alu -27 285 1 1304 244 47 80 chr11 60526233 60526785 -88256687 - L1MCa LINE L1 -4682 2259 1706 1828 153 10 7 chr11 60526785 60527085 -88256387 - AluSx SINE Alu -11 301 1 1304 244 47 80 chr11 60527085 60527635 -88255837 - L1MCa LINE L1 -5235 1706 1140 1006 130 0 19 chr11 60527665 60527809 -88255663 - AluSg/x SINE Alu -35 275 133 2378 58 3 0 chr11 60527809 60528103 -88255369 - AluY SINE Alu -16 295 1 1006 130 0 19 chr11 60528103 60528119 -88255353 - AluSg/x SINE Alu -177 133 118 246 133 0 22 chr11 60528125 60528170 -88255302 - L1MCa LINE L1 -6100 323 280 1450 205 0 0 chr11 60528170 60528443 -88255029 + 7SLRNA srpRNA srpRNA 11 283 -37 2099 82 3 33 chr11 60528483 60528788 -88254684 + AluY SINE Alu 1 296 -15 871 236 21 21 chr11 60528791 60529070 -88254402 - L1MCa LINE L1 -6139 673 24 404 222 24 40 chr11 60529381 60529507 -88253965 + LTR67 LTR ERVL 432 555 -2 758 206 59 0 chr11 60529626 60529796 -88253676 - MER58A DNA MER1_type 0 224 45 610 225 55 39 chr11 60531685 60531867 -88251605 - LTR41 LTR ERVL -586 187 3 268 284 32 11 chr11 60532193 60532288 -88251184 - ERVL LTR ERVL -330 5434 5338 643 210 66 39 chr11 60532336 60532517 -88250955 - LTR41 LTR ERVL -587 186 1 503 118 0 49 chr11 60532518 60532551 -88250921 + L1M4 LINE L1 2838 2871 -3275 1311 161 126 0 chr11 60532551 60532805 -88250667 + AluSx SINE Alu 1 286 -26 407 73 15 0 chr11 60532807 60532875 -88250597 + (TATAA)n Simple_repeat Simple_repeat 4 72 0 503 118 0 49 chr11 60532875 60532940 -88250532 + L1M4 LINE L1 2872 2934 -3212 1954 143 0 19 chr11 60532943 60533293 -88250179 + AluSx SINE Alu 1 312 0 366 182 57 45 chr11 60533295 60533383 -88250089 + L1M4 LINE L1 3136 3224 -2922 2234 88 0 0 chr11 60533383 60533696 -88249776 + AluSg SINE Alu 1 313 0 2012 138 0 19 chr11 60533700 60533836 -88249636 + AluJb SINE Alu 3 140 -172 1873 94 20 17 chr11 60533836 60534135 -88249337 + AluY SINE Alu 1 300 -11 2012 138 0 19 chr11 60534135 60534309 -88249163 + AluJb SINE Alu 140 307 -5 361 325 17 17 chr11 60534450 60534567 -88248905 - L2 LINE L2 -2 3270 3154 1607 183 10 3 chr11 60534593 60534882 -88248590 + AluJb SINE Alu 1 291 -21 23 0 0 0 chr11 60534882 60534905 -88248567 + AT_rich Low_complexity Low_complexity 1 23 0 261 0 0 0 chr11 60535031 60535060 -88248412 + (CA)n Simple_repeat Simple_repeat 2 30 0 189 317 0 17 chr11 60535093 60535153 -88248319 - MIR SINE MIR -202 60 2 1596 92 229 0 chr11 60535221 60535461 -88248011 - AluSx SINE Alu -7 295 1 282 330 0 0 chr11 60535463 60535560 -88247912 - MIR SINE MIR -112 150 54 485 286 60 40 chr11 60535721 60535896 -88247576 + MLT1I LTR MaLR 30 208 -201 1027 223 83 33 chr11 60535896 60536197 -88247275 + MLT1A2 LTR MaLR 1 316 -58 895 121 67 47 chr11 60536198 60536294 -88247178 + AluJo SINE Alu 2 104 -208 2499 106 28 14 chr11 60536294 60536653 -88246819 - THE1B LTR MaLR 0 364 1 895 121 67 47 chr11 60536653 60536705 -88246767 + AluJo SINE Alu 104 153 -159 1008 185 144 0 chr11 60536712 60536934 -88246538 + AluJo SINE Alu 39 292 -20 622 297 95 5 chr11 60537020 60537242 -88246230 + MIR SINE MIR 5 246 -16 2153 96 0 26 chr11 60537472 60537775 -88245697 - AluSx SINE Alu -17 295 1 2032 120 0 10 chr11 60538078 60538378 -88245094 - AluSx SINE Alu -15 297 1 1692 165 3 29 chr11 60538383 60538692 -88244780 - AluJb SINE Alu -11 301 1 2291 73 0 3 chr11 60538698 60539000 -88244472 - AluY SINE Alu -9 302 2 31 0 0 0 chr11 60539003 60539034 -88244438 + AT_rich Low_complexity Low_complexity 1 31 0 1965 118 3 23 chr11 60539078 60539384 -88244088 - AluSg SINE Alu -10 300 1 2162 109 6 10 chr11 60539454 60539767 -88243705 + AluSx SINE Alu 1 312 0 1534 182 7 0 chr11 60539780 60540049 -88243423 + AluJo SINE Alu 9 279 -33 256 91 73 0 chr11 60540053 60540108 -88243364 + (CAGGG)n Simple_repeat Simple_repeat 2 60 0 32 67 0 0 chr11 60540244 60540304 -88243168 + GC_rich Low_complexity Low_complexity 1 60 0 585 213 85 111 chr11 60541183 60541418 -88242054 - MIR SINE MIR -32 230 2 239 338 91 19 chr11 60541476 60541630 -88241842 - MIR SINE MIR -74 188 24 2054 96 3 18 chr11 60541909 60542235 -88241237 - AluSq SINE Alu 0 327 6 907 226 113 4 chr11 60542258 60542497 -88240975 - L1ME2 LINE L1 -6 6158 5894 181 176 0 0 chr11 60543915 60543949 -88239523 - MIR3 SINE MIR -9 199 166 453 217 185 38 chr11 60544193 60544377 -88239095 - L2 LINE L2 -4 3309 3099 793 191 23 0 chr11 60544388 60544519 -88238953 + AluSq/x SINE Alu 2 135 -178 27 0 0 0 chr11 60544519 60544546 -88238926 + AT_rich Low_complexity Low_complexity 1 27 0 2174 100 7 0 chr11 60544612 60544911 -88238561 + AluSx SINE Alu 1 301 -11 573 269 152 21 chr11 60544972 60545255 -88238217 - L2 LINE L2 -347 2967 2648 254 224 0 26 chr11 60545256 60545332 -88238140 + (CGTG)n Simple_repeat Simple_repeat 2 75 0 421 180 14 213 chr11 60545430 60545641 -88237831 - MIR SINE MIR -73 189 21 354 242 81 47 chr11 60546519 60546668 -88236804 + MLT1J2 LTR MaLR 1 154 -296 268 173 0 19 chr11 60546713 60546765 -88236707 + MLT1J2 LTR MaLR 280 330 -120 356 273 23 23 chr11 60546771 60546884 -88236588 + L2 LINE L2 2914 3026 -246 2288 135 36 75 chr11 60546884 60546938 -88236534 + MSTB LTR MaLR 1 56 -370 2273 88 0 13 chr11 60546938 60547244 -88236228 + AluSq SINE Alu 1 302 -11 2288 135 36 75 chr11 60547244 60547560 -88235912 + MSTB LTR MaLR 56 354 -72 2103 127 7 0 chr11 60547560 60547867 -88235605 - AluSq SINE Alu 0 313 5 2288 135 36 75 chr11 60547867 60547938 -88235534 + MSTB LTR MaLR 354 426 0 356 273 23 23 chr11 60547938 60547952 -88235520 + L2 LINE L2 3025 3041 -231 2409 80 0 0 chr11 60548116 60548417 -88235055 + AluSg SINE Alu 1 301 -9 876 231 25 37 chr11 60548430 60548673 -88234799 - MER96B DNA MER1_type? -177 240 1 1921 115 49 0 chr11 60549462 60549748 -88233724 - AluSx SINE Alu -12 300 1 898 262 144 55 chr11 60550046 60550424 -88233048 + LTR67 LTR ERVL 4 440 -117 2324 70 3 13 chr11 60550424 60550740 -88232732 - AluSp SINE Alu 0 313 1 898 262 144 55 chr11 60550740 60550868 -88232604 + LTR67 LTR ERVL 440 555 -2 360 207 0 0 chr11 60551280 60551396 -88232076 + (CA)n Simple_repeat Simple_repeat 1 116 0 573 234 3 3 chr11 60551414 60552065 -88231407 + (CA)n Simple_repeat Simple_repeat 1 651 0 514 278 6 0 chr11 60552080 60552256 -88231216 + (CA)n Simple_repeat Simple_repeat 2 178 0 1725 172 7 0 chr11 60553508 60553805 -88229667 - AluJb SINE Alu -13 299 1 2150 77 4 0 chr11 60553919 60554193 -88229279 - AluSg SINE Alu -35 275 1 206 209 30 30 chr11 60554194 60554261 -88229211 + MIR SINE MIR 81 147 -61 257 326 8 47 chr11 60554351 60554480 -88228992 - MIR SINE MIR -137 125 2 270 0 0 0 chr11 60555109 60555139 -88228333 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 424 246 9 18 chr11 60555144 60555254 -88228218 - L2 LINE L2 -19 3253 3145 390 21 0 0 chr11 60555543 60555590 -88227882 + (TG)n Simple_repeat Simple_repeat 1 47 0 1513 207 0 3 chr11 60555631 60555916 -88227556 + AluJb SINE Alu 7 290 -22 901 139 42 0 chr11 60555929 60556073 -88227399 - MSTA LTR MaLR -36 390 241 1190 116 0 6 chr11 60556073 60556246 -88227226 - AluSg/x SINE Alu -15 297 126 2413 74 0 7 chr11 60556247 60556556 -88226916 - AluSx SINE Alu -5 307 1 1093 144 149 9 chr11 60556556 60556778 -88226694 - MSTA LTR MaLR -175 253 1 322 326 0 11 chr11 60556793 60556974 -88226498 + (TG)n Simple_repeat Simple_repeat 2 180 0 267 31 0 0 chr11 60557001 60557033 -88226439 + (TG)n Simple_repeat Simple_repeat 2 33 0 193 354 31 0 chr11 60557486 60557556 -88225916 + MIR SINE MIR 81 153 -109 467 278 62 12 chr11 60557556 60557718 -88225754 + MER91A DNA MER1_type 1 170 -26 200 132 0 26 chr11 60559660 60559698 -88223774 + (CATTT)n Simple_repeat Simple_repeat 3 39 0 297 303 106 60 chr11 60560122 60560406 -88223066 + L2 LINE L2 2976 3272 0 2067 62 0 0 chr11 60560580 60560838 -88222634 + AluY SINE Alu 49 306 -5 1933 142 0 7 chr11 60560851 60561147 -88222325 + AluSx SINE Alu 4 297 -15 913 230 63 24 chr11 60561487 60561739 -88221733 + MIR SINE MIR 1 262 0 324 315 0 0 chr11 60561893 60561985 -88221487 + L2 LINE L2 3222 3313 0 1614 177 17 20 chr11 60562371 60562671 -88220801 + AluJo SINE Alu 1 299 -13 2131 133 3 0 chr11 60562671 60562979 -88220493 + AluSx SINE Alu 1 310 -2 756 255 96 21 chr11 60563185 60563611 -88219861 + LTR16C LTR ERVL 3 485 -6 353 219 149 18 chr11 60564790 60564904 -88218568 + MIR3 SINE MIR 31 159 -49 377 268 258 23 chr11 60566301 60566703 -88216769 + L2 LINE L2 2617 2923 -390 1735 139 7 30 chr11 60566703 60566998 -88216474 - AluSx SINE Alu -24 288 1 1805 122 57 11 chr11 60566998 60567276 -88216196 - AluSg SINE Alu -18 292 1 377 268 258 23 chr11 60567276 60567298 -88216174 + L2 LINE L2 2922 3125 -188 2393 80 0 3 chr11 60567486 60567797 -88215675 + AluSg SINE Alu 1 310 0 424 313 0 36 chr11 60567829 60567995 -88215477 + G-rich Low_complexity Low_complexity 2 161 0 266 318 119 0 chr11 60569384 60569510 -88213962 - MIR SINE MIR -106 156 16 365 275 72 36 chr11 60570081 60570248 -88213224 - MIR SINE MIR -55 207 35 305 294 28 9 chr11 60570268 60570377 -88213095 - MIR SINE MIR -6 256 146 253 326 128 0 chr11 60570423 60570564 -88212908 + MIR SINE MIR 84 242 -20 1557 193 0 39 chr11 60570564 60570869 -88212603 - AluJo SINE Alu -18 294 2 1628 235 33 21 chr11 60571058 60571368 -88212104 + MER63B DNA MER1_type 10 330 -732 2311 85 3 0 chr11 60571368 60571695 -88211777 - AluSx SINE Alu 0 328 1 1628 235 33 21 chr11 60571695 60571804 -88211668 + MER63B DNA MER1_type 330 436 0 566 235 197 2 chr11 60572192 60572396 -88211076 + MIR SINE MIR 1 240 -22 188 390 51 8 chr11 60572426 60572544 -88210928 - L2 LINE L2 -25 3247 3125 221 268 187 16 chr11 60572559 60572682 -88210790 + MIR SINE MIR 46 189 -73 197 306 111 14 chr11 60573339 60573411 -88210061 + MIR3 SINE MIR 81 159 -49 295 298 220 21 chr11 60573472 60573663 -88209809 - MIR SINE MIR -12 250 22 2294 104 0 3 chr11 60573828 60574127 -88209345 + AluSx SINE Alu 1 298 -14 439 304 24 12 chr11 60574445 60574613 -88208859 + L3 LINE CR1 1306 1475 -102 947 276 16 4 chr11 60574613 60574867 -88208605 - MIR SINE MIR 0 262 6 798 139 0 0 chr11 60574996 60575118 -88208354 - FLAM_C SINE Alu -11 122 1 220 311 85 9 chr11 60575434 60575540 -88207932 + MIR3 SINE MIR 45 158 -50 541 296 48 10 chr11 60576786 60576992 -88206480 + MIR SINE MIR 48 261 -1 267 205 157 12 chr11 60576993 60577076 -88206396 + MLT1J2 LTR MaLR 66 160 -290 458 272 37 25 chr11 60577135 60577297 -88206175 + MLT1J2 LTR MaLR 265 428 -22 1310 229 14 132 chr11 60577354 60577462 -88206010 - MLT2B1 LTR ERVL 0 520 401 1933 132 14 31 chr11 60577462 60577750 -88205722 + AluJb SINE Alu 19 301 -11 1310 229 14 132 chr11 60577750 60578231 -88205241 - MLT2B1 LTR ERVL -119 401 1 1056 134 12 0 chr11 60578337 60578501 -88204971 - FRAM SINE Alu 0 166 1 2246 120 0 3 chr11 60578860 60579159 -88204313 - AluSx SINE Alu -13 299 2 2400 92 3 19 chr11 60579175 60579492 -88203980 - AluSx SINE Alu 0 312 1 561 277 102 63 chr11 60579711 60580101 -88203371 + MLT1I LTR MaLR 1 409 0 838 121 0 89 chr11 60580196 60580353 -88203119 + FLAM_C SINE Alu 1 143 0 2367 88 0 10 chr11 60580359 60580664 -88202808 + AluY SINE Alu 3 304 -7 915 216 49 15 chr11 60580665 60580869 -88202603 + MER58A DNA MER1_type 14 224 0 319 286 160 29 chr11 60582443 60582618 -88200854 - MIR SINE MIR -51 211 14 2274 95 7 16 chr11 60582683 60582987 -88200485 + AluSq SINE Alu 2 302 -11 2200 75 3 34 chr11 60582987 60583279 -88200193 + AluSc SINE Alu 1 283 -26 2362 101 0 0 chr11 60583489 60583797 -88199675 + AluSx SINE Alu 1 308 -4 2020 141 0 0 chr11 60584292 60584576 -88198896 + AluSx SINE Alu 7 290 -22 1486 138 22 0 chr11 60584578 60584809 -88198663 + AluJb SINE Alu 70 305 -7 953 164 55 41 chr11 60584922 60585142 -88198330 - MER58B DNA MER1_type -5 336 114 2621 61 3 0 chr11 60585243 60585554 -88197918 + AluSx SINE Alu 1 312 0 266 270 104 78 chr11 60585704 60585819 -88197653 - MIR SINE MIR -61 147 30 222 318 93 9 chr11 60586156 60586263 -88197209 - MIR SINE MIR -63 145 30 331 253 175 7 chr11 60587277 60587431 -88196041 + MIR SINE MIR 12 191 -71 2409 54 0 4 chr11 60587500 60587780 -88195692 + AluSc SINE Alu 1 279 -30 268 207 99 72 chr11 60587863 60587974 -88195498 + MIR SINE MIR 103 216 -46 920 229 59 24 chr11 60588265 60588518 -88194954 + MIR SINE MIR 1 262 0 365 283 0 0 chr11 60588672 60588764 -88194708 + L2 LINE L2 3222 3313 0 1732 177 17 20 chr11 60589151 60589451 -88194021 + AluJo SINE Alu 1 299 -13 1976 97 3 74 chr11 60589553 60589851 -88193621 - AluSx SINE Alu -23 289 13 1015 178 19 0 chr11 60589862 60590019 -88193453 + AluJb SINE Alu 132 291 -21 525 177 21 0 chr11 60590526 60590622 -88192850 - AluJo SINE Alu -176 136 39 486 171 0 0 chr11 60590615 60590691 -88192781 - AluJ/FLAM SINE Alu -235 77 2 * 2379 97 3 0 chr11 60590738 60591046 -88192426 - AluSc SINE Alu 0 309 1 2319 58 10 10 chr11 60592483 60592807 -88190665 - AluY SINE Alu 0 311 1 617 305 125 53 chr11 60593814 60594240 -88189232 - MLT1H LTR MaLR -1 548 77 3137 149 50 26 chr11 60594240 60594843 -88188629 - LTR35 LTR ERV1 -1 617 1 617 305 125 53 chr11 60594843 60594927 -88188545 - MLT1H LTR MaLR -472 77 1 368 252 112 56 chr11 60594973 60595116 -88188356 - MER58B DNA MER1_type -3 338 188 311 245 66 57 chr11 60595108 60595214 -88188258 - MLT1H LTR MaLR -128 421 315 * 828 169 11 190 chr11 60595221 60595317 -88188155 + LTR34 LTR ERV1 15 126 -573 2246 114 0 0 chr11 60595317 60595614 -88187858 - AluSc SINE Alu -12 297 1 828 169 11 190 chr11 60595614 60595865 -88187607 + LTR34 LTR ERV1 126 300 -399 1756 129 17 106 chr11 60595869 60596176 -88187296 - MER4D LTR ERV1 0 903 641 2324 110 0 3 chr11 60596176 60596476 -88186996 + AluSg SINE Alu 1 299 -11 1756 129 17 106 chr11 60596476 60596585 -88186887 - MER4D LTR ERV1 -262 641 524 1147 143 0 0 chr11 60596586 60596747 -88186725 - AluSg/x SINE Alu -15 295 135 379 189 31 39 chr11 60596755 60596782 -88186690 + MER4-int LTR ERV1 2147 2173 -3600 2198 106 3 13 chr11 60596782 60597084 -88186388 + AluY SINE Alu 1 299 -12 379 189 31 39 chr11 60597084 60597202 -88186270 + MER4-int LTR ERV1 2173 3320 -2453 5002 99 66 44 chr11 60597206 60598110 -88185362 + MER4-int LTR ERV1 3925 4808 -1790 2268 115 3 10 chr11 60598110 60598424 -88185048 - AluSq SINE Alu -1 312 1 2175 137 0 10 chr11 60598425 60598732 -88184740 - AluSx SINE Alu -8 304 1 5002 99 66 44 chr11 60598732 60598949 -88184523 + MER4-int LTR ERV1 4808 5019 -1579 2110 103 0 31 chr11 60598949 60599263 -88184209 + AluSc SINE Alu 1 305 0 5002 99 66 44 chr11 60599263 60599595 -88183877 + MER4-int LTR ERV1 5019 5469 -1129 237 146 0 0 chr11 60599600 60599655 -88183817 - AluSp/q SINE Alu 0 303 249 755 253 97 19 chr11 60600362 60600783 -88182689 + LTR16C LTR ERVL 3 481 -10 346 219 149 18 chr11 60601967 60602081 -88181391 + MIR3 SINE MIR 31 159 -49 349 257 276 13 chr11 60603496 60603850 -88179622 + L2 LINE L2 2639 3074 -239 1843 142 7 30 chr11 60603884 60604179 -88179293 - AluSx SINE Alu -24 288 1 1933 122 57 11 chr11 60604179 60604457 -88179015 - AluSg SINE Alu -18 292 1 2300 95 3 10 chr11 60604667 60604971 -88178501 + AluSg SINE Alu 1 302 -8 872 149 128 0 chr11 60605418 60605566 -88177906 - FRAM SINE Alu -17 159 1 2406 66 3 10 chr11 60605584 60605885 -88177587 + AluSg SINE Alu 1 299 -11 1281 135 0 0 chr11 60605885 60606063 -88177409 + AluSg/x SINE Alu 134 311 -1 25 0 0 0 chr11 60606179 60606204 -88177268 + AT_rich Low_complexity Low_complexity 1 25 0 2166 115 7 7 chr11 60606205 60606501 -88176971 - AluSx SINE Alu -16 296 1 2290 260 49 39 chr11 60606522 60606992 -88176480 + L1ME4a LINE L1 3325 3810 -2336 2548 183 29 70 chr11 60606992 60607320 -88176152 - MER68 LTR ERV1 0 562 267 1492 161 0 29 chr11 60607320 60607562 -88175910 - AluJb SINE Alu -77 235 1 2548 183 29 70 chr11 60607562 60607819 -88175653 - MER68 LTR ERV1 -295 267 1 2290 260 49 39 chr11 60607819 60608262 -88175210 + L1ME4a LINE L1 3810 4247 -1899 409 230 106 54 chr11 60608409 60608672 -88174800 + LTR40c LTR ERVL 119 408 -54 692 242 38 27 chr11 60608676 60608862 -88174610 - MER58A DNA MER1_type 0 224 37 2253 108 7 0 chr11 60608865 60609162 -88174310 - AluSq SINE Alu -12 301 3 291 301 66 54 chr11 60609260 60609426 -88174046 + LTR33 LTR ERVL 43 210 -311 232 150 25 0 chr11 60609592 60609632 -88173840 + Alu SINE Alu 1 41 -267 2284 112 0 0 chr11 60611903 60612199 -88171273 - AluSc SINE Alu -11 298 3 2317 102 0 3 chr11 60612204 60612499 -88170973 - AluSc SINE Alu -15 294 1 1910 155 3 19 chr11 60612502 60612811 -88170661 - AluJo SINE Alu -8 304 1 489 304 111 22 chr11 60612940 60612992 -88170480 + L1ME4a LINE L1 5272 5318 -2490 2279 80 39 0 chr11 60612992 60613278 -88170194 + AluSx SINE Alu 1 297 -15 489 304 111 22 chr11 60613278 60613729 -88169743 + L1ME4a LINE L1 5318 5820 -1988 2366 105 0 0 chr11 60613734 60614038 -88169434 + AluSc SINE Alu 2 305 -4 2273 101 13 3 chr11 60614045 60614343 -88169129 + AluSq SINE Alu 1 301 -12 616 156 18 0 chr11 60614372 60614481 -88168991 + FRAM SINE Alu 51 161 -15 515 261 82 65 chr11 60614505 60614704 -88168768 + L1ME4a LINE L1 5868 6073 -48 2451 71 0 3 chr11 60614704 60615001 -88168471 - AluY SINE Alu -15 296 1 515 261 82 65 chr11 60615001 60615046 -88168426 + L1ME4a LINE L1 6073 6116 -5 1823 161 13 13 chr11 60616725 60616893 -88166579 - AluJb SINE Alu -8 304 134 2324 84 10 13 chr11 60616893 60617191 -88166281 - AluSg SINE Alu -13 297 1 1823 161 13 13 chr11 60617191 60617326 -88166146 - AluJb SINE Alu -177 135 1 1813 179 7 3 chr11 60617372 60617663 -88165809 + AluJo SINE Alu 1 292 -20 232 296 129 38 chr11 60618312 60618444 -88165028 - MIR3 SINE MIR -11 197 54 256 271 108 10 chr11 60619098 60619216 -88164256 - MIR SINE MIR -72 136 7 204 328 113 23 chr11 60619628 60619805 -88163667 - MIR SINE MIR -4 258 66 22 0 0 0 chr11 60620204 60620226 -88163246 + AT_rich Low_complexity Low_complexity 1 22 0 1492 137 24 108 chr11 60624270 60624605 -88158867 - AluJb SINE Alu -5 307 1 1826 48 0 22 chr11 60625593 60625822 -88157650 - AluY SINE Alu -13 298 75 898 86 0 0 chr11 60625826 60625942 -88157530 - AluY SINE Alu -195 116 1 616 275 39 6 chr11 60626172 60626350 -88157122 + MLT1K LTR MaLR 284 467 -121 1089 128 169 41 chr11 60626429 60626672 -88156800 + AluJo SINE Alu 1 274 -38 226 0 0 56 chr11 60626687 60626723 -88156749 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2120 69 7 4 chr11 60626727 60627043 -88156429 + AluSg1 SINE Alu 1 317 0 655 93 20 153 chr11 60627201 60627230 -88156242 - FLAM_C SINE Alu -172 130 99 1871 132 14 0 chr11 60627230 60627517 -88155955 + AluSg SINE Alu 1 291 -19 655 93 20 153 chr11 60627517 60627637 -88155835 - FLAM_C SINE Alu -203 99 1 1677 140 59 0 chr11 60627649 60627921 -88155551 - AluJo SINE Alu -24 288 1 513 293 120 18 chr11 60628025 60628250 -88155222 - MIR SINE MIR 0 262 15 720 295 17 38 chr11 60628829 60629066 -88154406 - MIR SINE MIR -13 249 18 225 304 76 11 chr11 60629682 60629774 -88153698 + L1MC/D LINE L1 5547 5644 -2164 2354 71 7 3 chr11 60629818 60630126 -88153346 - AluY SINE Alu -2 309 1 388 149 14 14 chr11 60630247 60630321 -88153151 + MIR SINE MIR 185 258 -4 1013 199 133 19 chr11 60630501 60630757 -88152715 - AluSg SINE Alu -20 290 6 214 172 69 17 chr11 60630814 60630872 -88152600 + (TATATG)n Simple_repeat Simple_repeat 3 63 0 1927 139 3 10 chr11 60630887 60631189 -88152283 + AluSx SINE Alu 1 300 -12 1803 141 30 23 chr11 60631686 60631985 -88151487 - AluSx SINE Alu -11 301 1 2144 109 0 3 chr11 60632492 60632795 -88150677 + AluSx SINE Alu 1 302 -10 2024 141 3 0 chr11 60636250 60636554 -88146918 - AluSx SINE Alu -7 305 1 2112 111 0 3 chr11 60636560 60636858 -88146614 - AluSg SINE Alu -13 297 1 574 206 141 35 chr11 60637135 60637305 -88146167 - MIR3 SINE MIR -5 203 16 22 0 0 0 chr11 60639572 60639594 -88143878 + AT_rich Low_complexity Low_complexity 1 22 0 1875 141 3 10 chr11 60639854 60640151 -88143321 - AluJb SINE Alu -16 296 2 180 0 0 0 chr11 60640251 60640271 -88143201 + (A)n Simple_repeat Simple_repeat 1 20 0 2264 103 0 0 chr11 60640309 60640611 -88142861 - AluSg SINE Alu -8 302 1 2214 108 0 0 chr11 60641596 60641893 -88141579 - AluSx SINE Alu -15 297 1 228 299 43 51 chr11 60642946 60643063 -88140409 + L2 LINE L2 3188 3303 -10 2311 87 0 6 chr11 60643886 60644197 -88139275 + AluSc SINE Alu 1 309 0 2230 92 7 0 chr11 60644551 60644855 -88138617 + AluSg SINE Alu 2 307 -3 244 169 136 0 chr11 60644939 60644998 -88138474 + L1MC5 LINE L1 7835 7901 -60 1368 201 10 30 chr11 60645357 60645660 -88137812 - AluJo SINE Alu -4 298 2 215 176 0 39 chr11 60646572 60646623 -88136849 + (CCCCG)n Simple_repeat Simple_repeat 5 53 0 1818 128 14 14 chr11 60647080 60647369 -88136103 + AluSx SINE Alu 17 305 -7 315 280 67 0 chr11 60648111 60648186 -88135286 - MIR SINE MIR -163 99 20 471 251 43 47 chr11 60648205 60648416 -88135056 + MER113 DNA MER1_type? 8 217 -304 1375 147 163 0 chr11 60648534 60648785 -88134687 - AluJb SINE Alu -20 292 1 327 164 16 29 chr11 60648961 60649046 -88134426 - L1ME2 LINE L1 0 6166 6080 2125 95 3 7 chr11 60649073 60649368 -88134104 + AluSx SINE Alu 1 294 -18 1871 152 7 0 chr11 60649383 60649680 -88133792 - AluJo SINE Alu -13 299 1 311 146 0 0 chr11 60649715 60649763 -88133709 - MSTA LTR MaLR 0 428 381 207 0 0 0 chr11 60649763 60649786 -88133686 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 1966 125 0 0 chr11 60649788 60650069 -88133403 - AluSq SINE Alu -32 281 1 3355 72 14 7 chr11 60650069 60650513 -88132959 + MER4A-int LTR ERV1 5464 5910 -688 1980 131 7 0 chr11 60650513 60650804 -88132668 + AluSx SINE Alu 1 293 -19 3597 98 51 19 chr11 60650805 60651378 -88132094 + MER4A-int LTR ERV1 6006 6596 -2 2149 162 69 107 chr11 60651386 60652010 -88131462 + MER4A LTR ERV1 1 600 0 1146 129 6 11 chr11 60652040 60652218 -88131254 - MER4D LTR ERV1 -726 177 1 1765 184 91 21 chr11 60652218 60652604 -88130868 + MER21B LTR ERV1 377 789 -74 829 170 7 20 chr11 60652605 60652752 -88130720 - AluJo SINE Alu -162 150 6 464 97 0 0 chr11 60652891 60652963 -88130509 - AluSp/q SINE Alu -6 307 236 351 0 0 0 chr11 60652975 60653014 -88130458 + (TG)n Simple_repeat Simple_repeat 2 40 0 901 117 0 0 chr11 60653021 60653149 -88130323 - AluSq/x SINE Alu -185 128 1 1841 137 24 3 chr11 60653509 60653802 -88129670 + AluSx SINE Alu 6 304 -8 2246 77 0 7 chr11 60653987 60654284 -88129188 + AluSc SINE Alu 1 295 -14 1276 111 6 0 chr11 60654532 60654712 -88128760 + AluSg/x SINE Alu 123 303 -9 857 215 25 5 chr11 60654868 60655068 -88128404 - AluY SINE Alu -104 207 4 889 195 0 27 chr11 60655069 60655254 -88128218 + AluJb SINE Alu 113 292 -20 764 220 71 75 chr11 60655277 60655514 -88127958 - LTR56 LTR ERV1 -146 299 63 2253 43 0 7 chr11 60655514 60655817 -88127655 - AluY SINE Alu 0 301 1 764 220 71 75 chr11 60655817 60655860 -88127612 - LTR56 LTR ERV1 -382 63 16 2266 68 3 16 chr11 60655860 60656170 -88127302 - AluSg SINE Alu -4 306 1 764 220 71 75 chr11 60656170 60656181 -88127291 - LTR56 LTR ERV1 -429 16 6 880 241 43 66 chr11 60656205 60656367 -88127105 + L1ME LINE L1 767 921 -5609 464 149 168 75 chr11 60656367 60656498 -88126974 + FLAM_A SINE Alu 1 141 0 880 241 43 66 chr11 60656498 60656637 -88126835 + L1ME LINE L1 921 1062 -5468 300 243 27 0 chr11 60656651 60656717 -88126755 + L1ME LINE L1 1166 1238 -5292 2197 107 7 0 chr11 60656717 60657026 -88126446 + AluSx SINE Alu 1 311 -1 300 243 27 0 chr11 60657026 60657070 -88126402 + L1ME LINE L1 1238 1279 -5251 921 129 0 22 chr11 60657071 60657210 -88126262 + AluSq/x SINE Alu 1 136 -176 322 214 0 0 chr11 60657220 60657276 -88126196 + L1ME LINE L1 1911 1966 -4574 1745 126 0 15 chr11 60657298 60657560 -88125912 + AluSx SINE Alu 1 258 -54 243 0 0 0 chr11 60657572 60657599 -88125873 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2139 100 13 0 chr11 60657604 60657903 -88125569 + AluSx SINE Alu 1 303 -9 1293 178 85 20 chr11 60657931 60658224 -88125248 - AluSx SINE Alu 0 312 1 1768 142 3 3 chr11 60658226 60658508 -88124964 + AluJo SINE Alu 29 310 -2 616 225 55 39 chr11 60659310 60659492 -88123980 - LTR41 LTR ERVL -586 187 3 272 284 32 11 chr11 60659818 60659913 -88123559 - ERVL LTR ERVL -330 5434 5338 648 210 66 39 chr11 60659961 60660142 -88123330 - LTR41 LTR ERVL -587 186 1 1240 158 117 0 chr11 60660176 60660416 -88123056 + AluSx SINE Alu 1 268 -44 589 0 13 26 chr11 60660425 60660503 -88122969 + (TAAAA)n Simple_repeat Simple_repeat 1 77 0 444 81 0 0 chr11 60660503 60660565 -88122907 + L1M4 LINE L1 2873 2934 -3212 1932 129 0 11 chr11 60660568 60660891 -88122581 + AluSx SINE Alu 1 320 0 472 214 86 26 chr11 60660891 60661008 -88122464 + L1M4 LINE L1 3101 3224 -2922 2217 88 0 0 chr11 60661008 60661321 -88122151 + AluSg SINE Alu 1 313 0 825 160 0 0 chr11 60661325 60661456 -88122016 + AluSq/x SINE Alu 3 133 -180 2141 93 3 13 chr11 60661461 60661763 -88121709 + AluY SINE Alu 1 299 -12 402 188 43 103 chr11 60661764 60661881 -88121591 + MER4-int LTR ERV1 3211 3320 -3278 5327 95 66 46 chr11 60661885 60662788 -88120684 + MER4-int LTR ERV1 3925 4808 -1790 2108 115 3 10 chr11 60662788 60663102 -88120370 - AluSq SINE Alu -1 312 1 2020 137 0 10 chr11 60663103 60663410 -88120062 - AluSx SINE Alu -8 304 1 5327 95 66 46 chr11 60663410 60663626 -88119846 + MER4-int LTR ERV1 4808 5018 -1580 1961 103 0 31 chr11 60663626 60663938 -88119534 + AluSc SINE Alu 1 303 0 5327 95 66 46 chr11 60663938 60664277 -88119195 + MER4-int LTR ERV1 5018 5475 -1123 678 240 78 20 chr11 60666817 60667021 -88116451 - MIR SINE MIR 0 262 47 1651 231 6 11 chr11 60667179 60667543 -88115929 + L1MD3 LINE L1 7617 7978 -17 1648 88 4 4 chr11 60667548 60667797 -88115675 - AluSg SINE Alu 0 305 57 227 125 0 0 chr11 60667799 60667831 -88115641 - Alu SINE Alu -210 90 59 666 118 0 0 chr11 60667831 60667924 -88115548 - AluSg1 SINE Alu -215 94 2 22 0 0 0 chr11 60667937 60667959 -88115513 + AT_rich Low_complexity Low_complexity 1 22 0 1697 148 11 11 chr11 60667987 60668271 -88115201 + AluJb SINE Alu 10 293 -19 2011 121 7 0 chr11 60668279 60668590 -88114882 + AluSx SINE Alu 1 313 0 195 273 146 55 chr11 60668629 60668739 -88114733 + MIR SINE MIR 106 225 -37 611 264 135 10 chr11 60669594 60669802 -88113670 - MIR SINE MIR -24 238 5 2127 103 7 0 chr11 60669924 60670226 -88113246 - AluSq SINE Alu -9 304 1 436 275 6 90 chr11 60670252 60670430 -88113042 - MIR SINE MIR -67 195 33 263 178 133 67 chr11 60670612 60670702 -88112770 - MIR3 SINE MIR -21 187 92 511 203 105 14 chr11 60671177 60671320 -88112152 - MIR3 SINE MIR -34 174 19 313 300 93 33 chr11 60672453 60672603 -88110869 - MIR SINE MIR -70 192 34 1062 302 77 29 chr11 60672821 60673509 -88109963 + L2 LINE L2 2545 3272 0 446 374 76 15 chr11 60674130 60674392 -88109080 + L2 LINE L2 2986 3263 -9 1057 171 101 9 chr11 60674998 60675215 -88108257 - MIR SINE MIR -16 246 10 308 380 0 0 chr11 60675432 60675574 -88107898 + (TG)n Simple_repeat Simple_repeat 1 142 0 308 303 48 21 chr11 60676496 60676641 -88106831 - MER5B DNA MER1_type -29 149 1 329 270 210 0 chr11 60677070 60677270 -88106202 - MIR SINE MIR 0 262 16 1866 163 3 0 chr11 60677375 60677670 -88105802 - AluSx SINE Alu -16 296 1 269 251 85 35 chr11 60677791 60677950 -88105522 - MIR SINE MIR -26 182 14 187 346 49 12 chr11 60678178 60678259 -88105213 + MIR SINE MIR 111 194 -68 2146 109 7 10 chr11 60679348 60679652 -88103820 + AluSx SINE Alu 1 303 -9 799 211 58 69 chr11 60679657 60679907 -88103565 + L1M4c LINE L1 1072 1323 -4980 1980 128 14 0 chr11 60679907 60680196 -88103276 + AluSx SINE Alu 1 293 -19 799 211 58 69 chr11 60680196 60680330 -88103142 + L1M4c LINE L1 1323 1780 -4523 668 231 0 15 chr11 60680332 60680466 -88103006 + FLAM_A SINE Alu 1 132 -1 956 152 103 0 chr11 60680481 60680665 -88102807 + MLT1B LTR MaLR 188 390 0 425 296 9 0 chr11 60680673 60680788 -88102684 + MER5A DNA MER1_type 60 175 -14 262 300 23 39 chr11 60680675 60680805 -88102667 - MER5A DNA MER1_type -50 139 12 * 2089 129 0 3 chr11 60681046 60681355 -88102117 + AluSc SINE Alu 1 308 -1 733 223 114 30 chr11 60681385 60681779 -88101693 + L1M4c LINE L1 1933 2359 -4025 1245 181 107 52 chr11 60681781 60682107 -88101365 - MER2 DNA MER2_type 0 344 1 1294 182 50 4 chr11 60682117 60682359 -88101113 - AluJb SINE Alu -15 297 45 332 153 42 102 chr11 60682361 60682394 -88101078 + L1M4c LINE L1 2374 2407 -3977 2235 68 21 0 chr11 60682394 60682675 -88100797 + AluY SINE Alu 1 287 -24 180 0 0 0 chr11 60682675 60682695 -88100777 + (CATAA)n Simple_repeat Simple_repeat 2 21 0 332 153 42 102 chr11 60682695 60682778 -88100694 + L1M4c LINE L1 2405 2484 -3900 685 153 7 139 chr11 60682779 60682912 -88100560 + L1M4c LINE L1 3043 3192 -3190 849 142 0 15 chr11 60682912 60683046 -88100426 + FLAM_C SINE Alu 2 133 0 685 153 7 139 chr11 60683046 60683061 -88100411 + L1M4c LINE L1 3192 3207 -3175 2222 103 6 0 chr11 60683061 60683372 -88100100 + AluSq SINE Alu 1 313 0 685 153 7 139 chr11 60683372 60683496 -88099976 + L1M4c LINE L1 3207 3280 -3102 1029 218 39 19 chr11 60683536 60683843 -88099629 + L1MA6 LINE L1 5987 6299 -1 218 247 13 58 chr11 60683974 60684128 -88099344 + G-rich Low_complexity Low_complexity 5 151 0 246 274 0 0 chr11 60686447 60686509 -88096963 + CT-rich Low_complexity Low_complexity 2 63 0 401 284 67 37 chr11 60687041 60687175 -88096297 + MIR3 SINE MIR 19 156 -52 2175 127 0 6 chr11 60687181 60687495 -88095977 - AluSx SINE Alu 0 312 1 501 210 38 22 chr11 60691072 60691233 -88092239 - MIR SINE MIR -61 147 15 655 267 58 15 chr11 60694166 60694372 -88089100 - MIR SINE MIR -1 261 47 1574 231 6 11 chr11 60694530 60694894 -88088578 + L1MD3 LINE L1 7617 7978 -17 1683 88 4 4 chr11 60694899 60695148 -88088324 - AluSg SINE Alu 0 305 57 228 158 0 0 chr11 60695182 60695220 -88088252 - Alu SINE Alu -206 94 57 678 113 10 0 chr11 60695251 60695348 -88088124 - AluSg1 SINE Alu -211 98 1 22 0 0 0 chr11 60695359 60695381 -88088091 + AT_rich Low_complexity Low_complexity 1 22 0 1793 151 10 10 chr11 60695404 60695695 -88087777 + AluJb SINE Alu 5 295 -17 2062 121 7 0 chr11 60695701 60696012 -88087460 + AluSx SINE Alu 1 313 0 227 273 146 55 chr11 60696051 60696161 -88087311 + MIR SINE MIR 106 225 -37 586 269 135 10 chr11 60697016 60697224 -88086248 - MIR SINE MIR -24 238 5 2178 103 7 0 chr11 60697346 60697648 -88085824 - AluSq SINE Alu -9 304 1 442 275 6 90 chr11 60697674 60697852 -88085620 - MIR SINE MIR -67 195 33 250 252 68 48 chr11 60698021 60698124 -88085348 - MIR3 SINE MIR -12 196 92 534 204 106 7 chr11 60698599 60698741 -88084731 - MIR3 SINE MIR -34 174 19 313 300 93 33 chr11 60699874 60700024 -88083448 - MIR SINE MIR -70 192 34 1127 298 76 29 chr11 60700242 60700931 -88082541 + L2 LINE L2 2545 3272 0 446 374 76 15 chr11 60701552 60701814 -88081658 + L2 LINE L2 2986 3263 -9 1057 171 101 9 chr11 60702420 60702637 -88080835 - MIR SINE MIR -16 246 10 308 380 0 0 chr11 60702854 60702996 -88080476 + (TG)n Simple_repeat Simple_repeat 1 142 0 308 303 48 21 chr11 60703918 60704063 -88079409 - MER5B DNA MER1_type -29 149 1 329 270 210 0 chr11 60704492 60704692 -88078780 - MIR SINE MIR 0 262 16 1866 163 3 0 chr11 60704797 60705092 -88078380 - AluSx SINE Alu -16 296 1 269 251 85 35 chr11 60705213 60705372 -88078100 - MIR SINE MIR -26 182 14 187 346 49 12 chr11 60705600 60705681 -88077791 + MIR SINE MIR 111 194 -68 2218 109 7 0 chr11 60706770 60707074 -88076398 + AluSx SINE Alu 1 306 -6 275 287 245 0 chr11 60707074 60707168 -88076304 + MER5A DNA MER1_type 67 183 -6 201 374 72 22 chr11 60707248 60707387 -88076085 - MIR3 SINE MIR -19 189 44 207 309 37 12 chr11 60707846 60707927 -88075545 - MIR SINE MIR -75 187 105 566 256 25 6 chr11 60708836 60708996 -88074476 + MER3 DNA MER1_type 17 179 -30 468 246 0 0 chr11 60709528 60709650 -88073822 + (CA)n Simple_repeat Simple_repeat 1 122 0 212 86 29 0 chr11 60709989 60710024 -88073448 + (CA)n Simple_repeat Simple_repeat 2 37 0 228 160 0 20 chr11 60710254 60710304 -88073168 + GA-rich Low_complexity Low_complexity 3 51 0 547 297 5 42 chr11 60712109 60712301 -88071171 - MIR3 SINE MIR -3 205 21 753 51 0 0 chr11 60713499 60713597 -88069875 + (GA)n Simple_repeat Simple_repeat 1 98 0 566 187 151 0 chr11 60715550 60715689 -88067783 + MER58C DNA MER1_type 56 215 0 222 274 0 14 chr11 60716836 60716909 -88066563 + GA-rich Low_complexity Low_complexity 4 75 0 653 213 10 58 chr11 60718653 60718843 -88064629 + MIR SINE MIR 10 192 -32 1035 252 5 0 chr11 60719135 60719357 -88064115 + MER58A DNA MER1_type 2 224 0 292 162 0 27 chr11 60719521 60719595 -88063877 + GA-rich Low_complexity Low_complexity 1 72 0 214 169 14 14 chr11 60721554 60721625 -88061847 + GA-rich Low_complexity Low_complexity 2 72 0 299 73 0 59 chr11 60721893 60721961 -88061511 + (CCA)n Simple_repeat Simple_repeat 2 65 0 278 270 0 0 chr11 60722661 60722724 -88060748 + (CA)n Simple_repeat Simple_repeat 1 63 0 211 308 11 11 chr11 60722800 60722891 -88060581 + GA-rich Low_complexity Low_complexity 1 91 0 223 275 0 0 chr11 60722956 60723012 -88060460 + MIR SINE MIR 107 153 -55 516 207 15 37 chr11 60724462 60724597 -88058875 + MER103 DNA DNA 34 165 -1 322 316 0 53 chr11 60725490 60725677 -88057795 + G-rich Low_complexity Low_complexity 3 179 0 321 89 0 0 chr11 60727627 60727672 -88055800 + (CA)n Simple_repeat Simple_repeat 1 45 0 198 91 0 0 chr11 60729463 60729496 -88053976 + (CA)n Simple_repeat Simple_repeat 1 33 0 255 122 0 0 chr11 60729602 60729651 -88053821 + (CA)n Simple_repeat Simple_repeat 2 50 0 192 77 0 0 chr11 60730947 60730973 -88052499 + (TG)n Simple_repeat Simple_repeat 2 27 0 507 249 67 18 chr11 60731488 60731653 -88051819 + MIR3 SINE MIR 32 204 -4 1695 121 30 74 chr11 60733353 60733651 -88049821 + AluSx SINE Alu 5 289 -23 420 20 0 0 chr11 60733660 60733709 -88049763 + (CA)n Simple_repeat Simple_repeat 2 50 0 198 200 0 0 chr11 60733747 60733792 -88049680 - L2 LINE L2 -90 3182 3138 2083 125 0 3 chr11 60733921 60734216 -88049256 - AluSq SINE Alu -19 294 1 290 213 0 0 chr11 60734216 60734277 -88049195 + MIR SINE MIR 61 121 -141 204 342 144 22 chr11 60734478 60734756 -88048716 - L2 LINE L2 -343 2971 2660 342 328 39 16 chr11 60735041 60735169 -88048303 + MIR3 SINE MIR 11 141 -67 573 228 222 6 chr11 60735204 60735375 -88048097 - MIR SINE MIR -35 227 20 822 270 133 38 chr11 60735904 60736296 -88047176 - L3 LINE CR1 -1 1576 1148 434 181 85 0 chr11 60736771 60736865 -88046607 + L2 LINE L2 3170 3271 -1 443 330 0 0 chr11 60736942 60737054 -88046418 + L2 LINE L2 3154 3265 -7 423 160 0 0 chr11 60737193 60737268 -88046204 + (CA)n Simple_repeat Simple_repeat 1 75 0 262 230 48 56 chr11 60737284 60737410 -88046062 + L2 LINE L2 2967 3091 -181 869 257 79 12 chr11 60737436 60737677 -88045795 + MIR SINE MIR 5 261 -1 186 349 63 24 chr11 60737774 60737900 -88045572 + L2 LINE L2 3140 3270 -2 293 315 105 28 chr11 60738395 60738611 -88044861 + MIR3 SINE MIR 11 232 -30 * 431 259 168 0 chr11 60738568 60738699 -88044773 - MIR SINE MIR 0 262 110 284 259 46 19 chr11 60738799 60738907 -88044565 + L2 LINE L2 2873 2983 -289 480 266 44 38 chr11 60739628 60739786 -88043686 - MIR SINE MIR -85 177 19 243 0 0 0 chr11 60741444 60741471 -88042001 + (CACCT)n Simple_repeat Simple_repeat 3 29 0 293 244 98 12 chr11 60742323 60742461 -88041011 + MIR SINE MIR 43 198 -10 576 278 26 26 chr11 60743584 60743775 -88039697 - MIR SINE MIR -12 250 60 308 299 60 45 chr11 60744049 60744183 -88039289 - MIR3 SINE MIR -63 145 10 219 305 0 55 chr11 60744833 60744961 -88038511 + GA-rich Low_complexity Low_complexity 2 122 0 248 290 108 12 chr11 60745236 60745340 -88038132 - MIR3 SINE MIR -32 176 61 639 244 90 43 chr11 60745571 60745805 -88037667 - MIR SINE MIR 0 262 18 520 276 2 0 chr11 60745941 60746067 -88037405 + MIR3 SINE MIR 34 162 -46 * 895 243 28 31 chr11 60746065 60746320 -88037152 - MIR SINE MIR 0 262 9 521 309 84 5 chr11 60747625 60747816 -88035656 + MIR SINE MIR 2 207 -55 326 308 32 39 chr11 60748724 60749019 -88034453 + L2 LINE L2 2729 3017 -255 400 295 9 0 chr11 60749092 60749197 -88034275 + MIR SINE MIR 154 259 -3 679 320 21 4 chr11 60749335 60749569 -88033903 - MIR SINE MIR -3 259 22 26 50 0 0 chr11 60755918 60755958 -88027514 + GC_rich Low_complexity Low_complexity 1 40 0 30 93 0 0 chr11 60756030 60756116 -88027356 + GC_rich Low_complexity Low_complexity 1 86 0 186 71 0 0 chr11 60756154 60756182 -88027290 + (CCCG)n Simple_repeat Simple_repeat 4 31 0 201 196 0 0 chr11 60756259 60756310 -88027162 + (TG)n Simple_repeat Simple_repeat 1 51 0 316 167 21 56 chr11 60756323 60756467 -88027005 + (CCG)n Simple_repeat Simple_repeat 2 140 0 238 193 11 11 chr11 60757229 60757317 -88026155 + (CA)n Simple_repeat Simple_repeat 1 88 0 192 77 0 0 chr11 60757682 60757708 -88025764 + (CA)n Simple_repeat Simple_repeat 1 26 0 1797 164 7 0 chr11 60758118 60758416 -88025056 + AluJo SINE Alu 1 300 -12 199 340 0 48 chr11 60758584 60758687 -88024785 - MIR3 SINE MIR -21 187 90 413 250 99 20 chr11 60759126 60759278 -88024194 + MIR SINE MIR 63 226 -36 2410 76 0 22 chr11 60759280 60759594 -88023878 + AluSg SINE Alu 1 307 -3 238 236 14 28 chr11 60759709 60759781 -88023691 - L3b LINE CR1 -194 1389 1319 415 240 30 0 chr11 60760997 60761097 -88022375 + MIR SINE MIR 44 146 -62 250 342 3 0 chr11 60761610 60761700 -88021772 + MIR SINE MIR 61 152 -56 233 343 150 7 chr11 60763443 60763583 -88019889 - MIR SINE MIR -9 253 94 326 326 56 9 chr11 60763845 60764060 -88019412 + L2 LINE L2 2065 2289 -1025 1905 132 36 7 chr11 60764391 60764694 -88018778 - AluSx SINE Alu 0 312 1 301 328 8 23 chr11 60764889 60765017 -88018455 + L2 LINE L2 3002 3127 -145 262 231 0 0 chr11 60765154 60765206 -88018266 - L2 LINE L2 0 3272 3221 181 259 86 0 chr11 60765499 60765557 -88017915 + L2 LINE L2 3205 3267 -5 215 284 69 29 chr11 60765673 60765775 -88017697 + MIR SINE MIR 157 262 0 370 282 24 32 chr11 60765809 60765933 -88017539 + MIR3 SINE MIR 54 176 -32 338 352 118 22 chr11 60766358 60766764 -88016708 + L2 LINE L2 2371 2815 -499 188 335 65 43 chr11 60766777 60766962 -88016510 - L2 LINE L2 -240 3032 2844 * 2454 231 95 137 chr11 60766955 60767521 -88015951 - L2 LINE L2 -22 3291 2702 180 0 0 0 chr11 60767521 60767541 -88015931 + (TG)n Simple_repeat Simple_repeat 2 21 0 2454 231 95 137 chr11 60767541 60767825 -88015647 - L2 LINE L2 -611 2702 2407 883 171 25 62 chr11 60767825 60767907 -88015565 - MER106A DNA MER1_type -5 231 147 2172 97 6 22 chr11 60767907 60768218 -88015254 - AluSx SINE Alu -6 306 1 883 171 25 62 chr11 60768218 60768375 -88015097 - MER106A DNA MER1_type -89 147 1 2454 231 95 137 chr11 60768375 60768851 -88014621 - L2 LINE L2 -906 2407 1912 1473 196 10 32 chr11 60768851 60769030 -88014442 - AluJo SINE Alu -8 304 133 2336 86 0 0 chr11 60769030 60769333 -88014139 - AluY SINE Alu -8 303 1 1473 196 10 32 chr11 60769333 60769464 -88014008 - AluJo SINE Alu -179 133 1 2454 231 95 137 chr11 60769464 60770061 -88013411 - L2 LINE L2 -1401 1912 1225 327 296 19 86 chr11 60770121 60770283 -88013189 + MIR SINE MIR 5 155 -107 450 0 0 0 chr11 60770930 60770980 -88012492 + (TG)n Simple_repeat Simple_repeat 2 51 0 263 281 83 10 chr11 60771668 60771764 -88011708 - MIR3 SINE MIR -25 183 81 372 269 65 0 chr11 60771920 60772013 -88011459 - L2 LINE L2 -20 3293 3195 704 233 26 37 chr11 60772017 60772206 -88011266 - MIR SINE MIR -72 190 4 225 218 268 28 chr11 60772206 60772348 -88011124 + MIR3 SINE MIR 18 193 -15 352 248 128 21 chr11 60772560 60772701 -88010771 + MIR3 SINE MIR 30 185 -23 239 176 71 10 chr11 60773398 60773474 -88009998 - MIR SINE MIR -59 149 69 740 303 58 23 chr11 60773642 60773989 -88009483 + L2 LINE L2 2914 3272 0 271 200 114 38 chr11 60775180 60775285 -88008187 + MIR3 SINE MIR 66 178 -30 334 240 13 0 chr11 60775372 60775447 -88008025 + L2 LINE L2 3225 3300 -13 185 255 0 0 chr11 60776193 60776244 -88007228 - L2 LINE L2 -298 2974 2924 520 100 0 0 chr11 60776344 60776414 -88007058 + AluS SINE Alu 1 70 -243 1978 77 0 8 chr11 60776414 60776674 -88006798 + AluSx SINE Alu 39 296 -16 442 231 39 0 chr11 60777253 60777357 -88006115 + MIR3 SINE MIR 47 154 -54 421 265 103 15 chr11 60777612 60777748 -88005724 + MIR SINE MIR 33 180 -82 258 247 65 39 chr11 60779159 60779236 -88004236 - MIR SINE MIR -19 243 165 994 132 56 112 chr11 60779242 60779429 -88004043 + MER46A DNA MER2_type 1 197 -2534 2151 101 6 22 chr11 60779429 60779745 -88003727 - AluSp SINE Alu -2 311 1 2186 82 0 0 chr11 60779750 60780060 -88003412 - AluY SINE Alu 0 310 1 1977 94 58 0 chr11 60780063 60780339 -88003133 - AluSq SINE Alu -21 292 1 994 132 56 112 chr11 60780339 60780356 -88003116 + MER46A DNA MER2_type 203 219 -2512 1456 145 205 0 chr11 60780356 60780605 -88002867 - AluJo SINE Alu -1 301 2 994 132 56 112 chr11 60780605 60780638 -88002834 + MER46A DNA MER2_type 219 236 0 494 263 58 0 chr11 60780648 60780785 -88002687 - MIR SINE MIR -106 156 12 231 203 136 17 chr11 60781262 60781321 -88002151 + MIR SINE MIR 81 146 -62 1201 324 28 25 chr11 60782633 60782907 -88000565 - L1MC4a LINE L1 -85 6036 5764 2254 102 0 0 chr11 60782907 60783210 -88000262 - AluSg SINE Alu -7 303 1 1201 324 28 25 chr11 60783210 60783538 -87999934 - L1MC4a LINE L1 -357 5764 5427 374 278 28 9 chr11 60783664 60783772 -87999700 - MIR SINE MIR -117 145 36 267 31 0 0 chr11 60784790 60784822 -87998650 + (TG)n Simple_repeat Simple_repeat 1 32 0 226 94 0 38 chr11 60784870 60784923 -87998549 + (CAGAGA)n Simple_repeat Simple_repeat 2 52 0 408 128 0 0 chr11 60785039 60785117 -87998355 + (GA)n Simple_repeat Simple_repeat 2 79 0 389 243 107 17 chr11 60785715 60785861 -87997611 + MIR SINE MIR 35 191 -69 1948 224 42 29 chr11 60787099 60787555 -87995917 + MLT1C LTR MaLR 2 463 -4 1720 107 127 0 chr11 60787645 60787943 -87995529 + AluSx SINE Alu 1 330 0 1909 119 3 39 chr11 60788008 60788318 -87995154 - AluSx SINE Alu -12 300 2 292 234 51 42 chr11 60788342 60788477 -87994995 - MLT1L LTR MaLR 0 615 376 406 251 86 43 chr11 60788803 60788966 -87994506 - MIR3 SINE MIR -28 180 11 2976 217 20 40 chr11 60789482 60790021 -87993451 + Zaphod DNA AcHobo 136 684 -3347 2199 139 33 43 chr11 60790021 60790389 -87993083 + THE1B LTR MaLR 1 364 0 2976 217 20 40 chr11 60790389 60790498 -87992974 + Zaphod DNA AcHobo 684 794 -3237 1680 199 3 0 chr11 60790498 60790795 -87992677 - AluJo SINE Alu -14 298 1 2976 217 20 40 chr11 60790795 60790822 -87992650 + Zaphod DNA AcHobo 794 820 -3211 1874 153 3 0 chr11 60790822 60791109 -87992363 + AluSx SINE Alu 1 288 -24 2976 217 20 40 chr11 60791109 60791265 -87992207 + Zaphod DNA AcHobo 820 953 -3078 1347 170 188 3 chr11 60791281 60791617 -87991855 + Zaphod DNA AcHobo 3634 4031 0 3930 162 56 37 chr11 60791621 60792071 -87991401 - L1MB7 LINE L1 0 6184 5744 1711 102 4 0 chr11 60792071 60792306 -87991166 + AluSx SINE Alu 2 237 -75 3930 162 56 37 chr11 60792306 60792424 -87991048 - L1MB7 LINE L1 -440 5744 5630 2424 45 3 0 chr11 60792424 60792715 -87990757 - AluY SINE Alu -19 292 1 3930 162 56 37 chr11 60792715 60793009 -87990463 - L1MB7 LINE L1 -554 5630 5305 1867 126 33 27 chr11 60793021 60793190 -87990282 - AluSq SINE Alu -8 305 139 194 0 39 0 chr11 60793190 60793216 -87990256 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1875 144 3 0 chr11 60793216 60793500 -87989972 - AluSx SINE Alu -27 285 1 1867 126 33 27 chr11 60793500 60793630 -87989842 - AluSq SINE Alu -173 140 3 619 251 103 0 chr11 60793896 60794071 -87989401 + MIR SINE MIR 14 206 -56 274 327 53 0 chr11 60794122 60794235 -87989237 - L3 LINE CR1 -120 1457 1339 533 254 147 11 chr11 60794740 60794917 -87988555 + MIR SINE MIR 17 217 -45 376 287 0 0 chr11 60795044 60795145 -87988327 - MIR SINE MIR -115 147 47 2114 99 7 0 chr11 60795416 60795699 -87987773 - AluSx SINE Alu -13 299 15 181 205 26 0 chr11 60795921 60795960 -87987512 + MIR SINE MIR 111 150 -58 454 260 172 21 chr11 60796305 60796497 -87986975 - MIR SINE MIR -34 228 8 1735 107 118 15 chr11 60796702 60796974 -87986498 + AluSg SINE Alu 3 302 -8 801 254 36 13 chr11 60797004 60797228 -87986244 - MIR SINE MIR 0 262 34 1098 169 85 0 chr11 60798136 60798337 -87985135 + MER39 LTR ERV1 1 218 -489 1572 116 17 0 chr11 60798345 60798578 -87984894 + AluSx SINE Alu 1 237 -75 1659 127 0 4 chr11 60798585 60798829 -87984643 + AluSx SINE Alu 63 305 -7 1064 228 42 19 chr11 60798882 60799337 -87984135 - MLT1J LTR MaLR -8 503 1 2140 108 3 3 chr11 60799439 60799734 -87983738 - AluSx SINE Alu -17 295 1 1432 6 0 0 chr11 60799747 60799905 -87983567 - L1PA2 LINE L1 -1 6154 5997 236 182 0 0 chr11 60801385 60801429 -87982043 + MIR SINE MIR 78 121 -141 246 283 43 43 chr11 60801822 60801914 -87981558 + MIR SINE MIR 94 185 -77 207 0 0 0 chr11 60802505 60802528 -87980944 + (CCCCAG)n Simple_repeat Simple_repeat 2 24 0 280 302 63 71 chr11 60803696 60803951 -87979521 - L2 LINE L2 -540 2774 2522 286 357 9 9 chr11 60803963 60804075 -87979397 + MER5B DNA MER1_type 1 112 -66 1860 136 0 4 chr11 60804086 60804399 -87979073 - AluSg SINE Alu 0 312 1 1862 95 44 15 chr11 60804435 60804708 -87978764 + AluSx SINE Alu 1 281 -31 1661 130 14 18 chr11 60804711 60804988 -87978484 - L1MB2 LINE L1 -8 6163 5888 617 97 0 11 chr11 60805019 60805257 -87978215 + AluSx SINE Alu 8 310 0 214 310 0 0 chr11 60805266 60805324 -87978148 - MER5A DNA MER1_type -129 60 3 243 195 256 0 chr11 60805556 60805638 -87977834 + MER5A DNA MER1_type 4 106 -83 764 315 17 0 chr11 60806082 60806317 -87977155 - MIR SINE MIR -15 247 9 284 355 66 8 chr11 60806334 60806455 -87977017 - MIR SINE MIR -122 140 13 1632 156 0 0 chr11 60806473 60806716 -87976756 + Charlie3 DNA MER1_type 1 243 -2467 2184 101 0 7 chr11 60806716 60807022 -87976450 - AluSp SINE Alu -9 304 1 239 111 0 0 chr11 60807037 60807073 -87976399 + Charlie3 DNA MER1_type 2667 2702 -8 191 268 36 0 chr11 60807078 60807134 -87976338 - MIR SINE MIR -117 145 88 1477 178 27 0 chr11 60807259 60807517 -87975955 + AluJb SINE Alu 37 301 -11 2289 103 0 3 chr11 60807577 60807888 -87975584 + AluSg SINE Alu 1 310 0 2111 109 0 3 chr11 60808270 60808564 -87974908 - AluSq SINE Alu -20 293 1 937 204 12 0 chr11 60808785 60808957 -87974515 - MER45A DNA AcHobo 0 178 5 192 158 0 0 chr11 60810923 60810961 -87972511 + (CTG)n Simple_repeat Simple_repeat 3 40 0 317 262 107 33 chr11 60811078 60811200 -87972272 + L1M4 LINE L1 3047 3177 -2969 1973 111 0 16 chr11 60811248 60811554 -87971918 + AluSc SINE Alu 2 302 -7 612 234 14 21 chr11 60811555 60811700 -87971772 - MER5B DNA MER1_type -34 144 1 2105 97 0 0 chr11 60811704 60811994 -87971478 + AluY SINE Alu 3 292 -19 322 260 100 0 chr11 60812235 60812335 -87971137 + MLT1K LTR MaLR 454 563 -25 274 309 12 0 chr11 60812363 60812444 -87971028 + MIR SINE MIR 175 256 -6 240 277 0 31 chr11 60812802 60812867 -87970605 - L2 LINE L2 -5 3267 3205 1960 105 3 58 chr11 60813263 60813588 -87969884 + AluSc SINE Alu 1 307 -2 1702 176 18 15 chr11 60813864 60814204 -87969268 + MLT1A1 LTR MaLR 25 365 0 775 276 72 82 chr11 60814207 60814407 -87969065 - L1MC4a LINE L1 -1872 5936 5736 1611 163 0 14 chr11 60814407 60814684 -87968788 - AluJb SINE Alu -6 306 34 775 276 72 82 chr11 60814684 60814700 -87968772 - L1MC4a LINE L1 -2072 5736 5721 2338 93 0 0 chr11 60814700 60815010 -87968462 - AluSq SINE Alu -3 310 1 775 276 72 82 chr11 60815010 60815220 -87968252 - L1MC4a LINE L1 -2087 5721 5513 236 331 65 0 chr11 60815243 60815382 -87968090 - L1ME4a LINE L1 -4 6117 5970 638 309 37 0 chr11 60815530 60815721 -87967751 + MIR SINE MIR 51 248 -14 2042 75 0 0 chr11 60815721 60815976 -87967496 + AluSq SINE Alu 26 280 -33 321 26 0 0 chr11 60815980 60816018 -87967454 + (CA)n Simple_repeat Simple_repeat 2 39 0 336 326 70 17 chr11 60816020 60816192 -87967280 - L1ME4a LINE L1 -280 5841 5661 1513 179 27 94 chr11 60816416 60816742 -87966730 + L1MB7 LINE L1 5720 6019 -165 2299 87 0 6 chr11 60816742 60817053 -87966419 - AluSg SINE Alu -1 309 1 1513 179 27 94 chr11 60817053 60817171 -87966301 + L1MB7 LINE L1 6019 6143 -41 304 275 114 38 chr11 60817295 60817426 -87966046 - MER5B DNA MER1_type -11 167 27 4217 123 26 3 chr11 60817538 60818158 -87965314 - MER41B LTR ERV1 0 635 2 508 223 211 6 chr11 60818189 60818364 -87965108 + MIR SINE MIR 21 231 -31 1533 149 50 29 chr11 60818460 60818741 -87964731 - AluJo SINE Alu -25 287 1 2235 99 7 0 chr11 60819059 60819362 -87964110 + AluSx SINE Alu 1 305 -7 2432 65 3 0 chr11 60819913 60820222 -87963250 - AluY SINE Alu 0 311 2 314 257 30 20 chr11 60820261 60820362 -87963110 - L1M4 LINE L1 -2939 3207 3106 2507 137 7 100 chr11 60820480 60820665 -87962807 - L1MB3 LINE L1 -102 6081 5880 2296 88 3 3 chr11 60820665 60820971 -87962501 - AluSx SINE Alu -6 306 1 2507 137 7 100 chr11 60820971 60821118 -87962354 - L1MB3 LINE L1 -303 5880 5821 1980 135 6 6 chr11 60821118 60821429 -87962043 - AluSx SINE Alu -1 311 1 2507 137 7 100 chr11 60821429 60821663 -87961809 - L1MB3 LINE L1 -362 5821 5567 971 92 8 0 chr11 60821778 60821909 -87961563 - AluY SINE Alu -179 132 1 240 277 0 31 chr11 60822304 60822369 -87961103 + L2 LINE L2 3205 3267 -5 217 284 45 11 chr11 60822726 60822814 -87960658 - MIR SINE MIR -6 256 166 238 250 31 0 chr11 60822835 60822899 -87960573 - MLT1K LTR MaLR -26 562 497 232 265 108 85 chr11 60822951 60823174 -87960298 - MLT1L LTR MaLR -200 415 188 2124 93 0 0 chr11 60823176 60823466 -87960006 - AluY SINE Alu -19 292 3 612 234 14 21 chr11 60823470 60823615 -87959857 + MER5B DNA MER1_type 1 144 -34 2115 119 7 0 chr11 60823616 60823919 -87959553 - AluSx SINE Alu -7 305 1 2195 85 16 3 chr11 60824263 60824568 -87958904 + AluSc SINE Alu 1 309 0 1458 174 81 38 chr11 60824951 60825089 -87958383 + MLT2B1 LTR ERVL 1 132 -383 2088 130 3 0 chr11 60825089 60825396 -87958076 + AluSx SINE Alu 1 308 -4 1458 174 81 38 chr11 60825396 60825707 -87957765 + MLT2B1 LTR ERVL 132 513 -2 380 271 54 47 chr11 60825758 60825887 -87957585 + MLT1H LTR MaLR 420 549 0 2414 90 0 0 chr11 60826069 60826379 -87957093 - AluSx SINE Alu -2 310 1 1033 108 0 0 chr11 60826379 60826518 -87956954 - AluSq/x SINE Alu -171 141 3 1678 176 0 10 chr11 60826552 60826841 -87956631 - AluJo SINE Alu -24 288 3 863 200 52 57 chr11 60826861 60827091 -87956381 + MIR SINE MIR 32 260 -2 352 325 96 0 chr11 60827089 60827255 -87956217 - MIR SINE MIR -49 213 32 * 2158 95 0 13 chr11 60827255 60827561 -87955911 - AluSg SINE Alu -8 302 1 2298 68 9 43 chr11 60827707 60828029 -87955443 - AluSp SINE Alu -2 311 1 270 226 71 32 chr11 60828146 60828260 -87955212 + MIR SINE MIR 37 158 -50 2353 93 3 0 chr11 60828653 60828963 -87954509 + AluSp SINE Alu 2 312 -1 286 267 89 34 chr11 60829397 60829543 -87953929 + L1MC4 LINE L1 7596 7749 -293 1975 141 3 0 chr11 60829629 60829933 -87953539 + AluSx SINE Alu 6 310 -2 918 143 0 0 chr11 60829947 60830080 -87953392 + FLAM_C SINE Alu 1 133 0 2230 84 7 7 chr11 60830107 60830406 -87953066 + AluSx SINE Alu 1 299 -13 21 0 0 0 chr11 60830406 60830427 -87953045 + AT_rich Low_complexity Low_complexity 1 21 0 2173 154 60 10 chr11 60830545 60831167 -87952305 + MER39 LTR ERV1 1 707 0 2057 132 0 0 chr11 60831204 60831492 -87951980 - AluSx SINE Alu -24 288 1 8096 52 5 0 chr11 60832122 60833086 -87950386 - LTR5 LTR ERVK 0 969 1 2141 102 7 13 chr11 60833127 60833430 -87950042 - AluSx SINE Alu -11 301 1 311 251 22 39 chr11 60833555 60833734 -87949738 + G-rich Low_complexity Low_complexity 2 177 0 186 188 0 0 chr11 60833789 60833837 -87949635 - L2 LINE L2 -345 2969 2922 1546 242 41 62 chr11 60834199 60834407 -87949065 - MER20B DNA MER1_type -18 765 554 2242 113 0 0 chr11 60834407 60834717 -87948755 + AluSx SINE Alu 3 312 0 1546 242 41 62 chr11 60834717 60835021 -87948451 - MER20B DNA MER1_type -229 554 264 1912 138 10 0 chr11 60835420 60835710 -87947762 + AluSx SINE Alu 1 293 -19 620 281 25 10 chr11 60835783 60835982 -87947490 - MIR SINE MIR -54 208 7 3369 102 106 18 chr11 60836887 60837240 -87946232 + MER41A LTR ERV1 1 321 -233 2052 109 3 3 chr11 60837240 60837533 -87945939 + AluSq SINE Alu 5 297 -16 2341 80 0 6 chr11 60837533 60837846 -87945626 + AluY SINE Alu 1 311 0 3369 102 106 18 chr11 60837846 60838000 -87945472 + MER41A LTR ERV1 320 554 0 412 224 0 0 chr11 60838042 60838127 -87945345 + L1ME LINE L1 5461 5545 -617 1307 177 29 4 chr11 60838127 60838370 -87945102 - MSTB LTR MaLR 0 426 178 1497 130 0 30 chr11 60838373 60838604 -87944868 + AluSq SINE Alu 1 224 -89 448 162 155 0 chr11 60838719 60838834 -87944638 - MSTB LTR MaLR -245 183 45 1974 109 3 26 chr11 60838834 60839145 -87944327 - AluSx SINE Alu -8 304 1 586 100 0 11 chr11 60839145 60839235 -87944237 + LTR49 LTR ERV1 507 595 0 * 2316 169 111 22 chr11 60839235 60839730 -87943742 + MER21A LTR ERV1 390 929 -2 2325 97 0 3 chr11 60839742 60840110 -87943362 + AluSg SINE Alu 1 367 0 2110 98 0 11 chr11 60840151 60840470 -87943002 + AluSx SINE Alu 1 316 0 2177 158 2 54 chr11 60840530 60840659 -87942813 + L1M3 LINE L1 5363 5497 -686 2013 126 3 0 chr11 60840659 60840960 -87942512 + AluSx SINE Alu 8 309 -3 2122 89 0 3 chr11 60840964 60841277 -87942195 + AluY SINE Alu 1 312 0 231 88 0 0 chr11 60841281 60841315 -87942157 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2177 158 2 54 chr11 60841315 60841597 -87941875 + L1M3 LINE L1 5503 5763 -420 990 106 14 0 chr11 60841635 60841776 -87941696 + AluSq/x SINE Alu 1 143 -169 244 289 0 40 chr11 60842851 60842927 -87940545 + Charlie4 DNA MER1_type 1883 1955 -6 235 342 3 0 chr11 60842928 60843018 -87940454 - MIR SINE MIR -56 152 61 410 240 30 0 chr11 60843531 60843631 -87939841 - MIR SINE MIR -62 146 44 230 236 14 28 chr11 60844849 60844921 -87938551 + L3b LINE CR1 1319 1389 -194 2458 68 0 3 chr11 60845036 60845343 -87938129 - AluSx SINE Alu -5 307 2 2107 129 3 0 chr11 60846283 60846592 -87936880 - AluSx SINE Alu -2 310 1 520 310 6 6 chr11 60846689 60846847 -87936625 + MIR3 SINE MIR 14 171 -37 371 279 55 60 chr11 60846864 60847065 -87936407 - L2 LINE L2 -13 3259 3060 3653 117 25 16 chr11 60847451 60847879 -87935593 + MER41C LTR ERV1 1 438 -116 2046 86 18 4 chr11 60847879 60848191 -87935281 - AluSx SINE Alu 0 316 1 3653 117 25 16 chr11 60848191 60848310 -87935162 + MER41C LTR ERV1 438 554 0 497 191 113 0 chr11 60848319 60848434 -87935038 - MER5B DNA MER1_type 0 178 51 966 155 17 6 chr11 60848650 60848831 -87934641 - MER53 DNA DNA -6 183 1 357 265 10 20 chr11 60848853 60848955 -87934517 + MIR SINE MIR 35 135 -73 231 114 0 0 chr11 60849111 60849146 -87934326 + (TCCA)n Simple_repeat Simple_repeat 1 35 0 2341 75 0 0 chr11 60849245 60849540 -87933932 - AluY SINE Alu -16 295 1 216 241 35 0 chr11 60849554 60849612 -87933860 + CT-rich Low_complexity Low_complexity 1 60 0 331 318 221 38 chr11 60849691 60850084 -87933388 - L2 LINE L2 -14 3299 2835 2244 95 0 3 chr11 60850145 60850441 -87933031 + AluSc SINE Alu 1 295 -14 1560 204 75 33 chr11 60850493 60850891 -87932581 - MLT1D LTR MaLR 0 505 91 2108 111 10 3 chr11 60850909 60851216 -87932256 + AluSx SINE Alu 1 309 -3 983 164 0 18 chr11 60851223 60851379 -87932093 + AluSg/x SINE Alu 130 284 -28 180 0 0 0 chr11 60851379 60851399 -87932073 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 455 227 0 0 chr11 60851407 60851495 -87931977 - MLT1D LTR MaLR -417 88 1 1955 207 44 15 chr11 60851498 60851559 -87931913 + L1ME3 LINE L1 5648 5706 -456 1880 180 48 22 chr11 60851559 60851915 -87931557 - MLT1A1 LTR MaLR 0 365 1 1955 207 44 15 chr11 60851915 60852308 -87931164 + L1ME3 LINE L1 5706 6115 -47 960 86 23 0 chr11 60852348 60852476 -87930996 - AluYb8 SINE Alu -185 133 3 386 313 166 5 chr11 60852498 60852715 -87930757 - L2 LINE L2 -556 2758 2507 1344 111 0 0 chr11 60852770 60853309 -87930163 + (TGGA)n Simple_repeat Simple_repeat 1 539 0 324 276 0 0 chr11 60853335 60853462 -87930010 + (TGGG)n Simple_repeat Simple_repeat 2 128 0 259 274 14 0 chr11 60853803 60853876 -87929596 + (CCA)n Simple_repeat Simple_repeat 3 76 0 273 247 103 41 chr11 60855209 60855355 -87928117 - MIR SINE MIR 0 262 108 180 77 0 0 chr11 60855848 60855874 -87927598 + (CA)n Simple_repeat Simple_repeat 2 27 0 2104 89 21 0 chr11 60856284 60856565 -87926907 - AluSg SINE Alu -23 287 1 2408 77 0 0 chr11 60856567 60856867 -87926605 - AluSx SINE Alu -12 300 1 227 286 0 29 chr11 60856887 60856957 -87926515 - MER5A DNA MER1_type -2 187 120 2117 96 7 7 chr11 60857279 60857580 -87925892 - AluSx SINE Alu -11 301 1 182 331 69 55 chr11 60858237 60858512 -87924960 + L2 LINE L2 2948 3226 -46 207 245 0 0 chr11 60858648 60858697 -87924775 + G-rich Low_complexity Low_complexity 1 49 0 2141 102 7 13 chr11 60859871 60860174 -87923298 + AluSx SINE Alu 1 301 -11 8096 52 5 0 chr11 60860215 60861179 -87922293 + LTR5 LTR ERVK 1 969 0 2057 132 0 0 chr11 60861809 60862097 -87921375 + AluSx SINE Alu 1 288 -24 2173 154 75 9 chr11 60862134 60862756 -87920716 - MER39 LTR ERV1 0 707 1 358 226 33 127 chr11 60862760 60862886 -87920586 - L1ME4a LINE L1 -24 6097 5961 2230 84 7 7 chr11 60862886 60863185 -87920287 - AluSx SINE Alu -13 299 1 358 226 33 127 chr11 60863185 60863212 -87920260 - L1ME4a LINE L1 -160 5961 5933 918 143 0 0 chr11 60863212 60863345 -87920127 - FLAM_C SINE Alu 0 133 1 358 226 33 127 chr11 60863345 60863359 -87920113 - L1ME4a LINE L1 -188 5933 5949 1975 141 3 0 chr11 60863359 60863663 -87919809 - AluSx SINE Alu -2 310 6 358 226 33 127 chr11 60863663 60863705 -87919767 - L1ME4a LINE L1 -171 5950 5906 286 267 89 34 chr11 60863749 60863895 -87919577 - L1MC4 LINE L1 -293 7749 7596 191 211 0 0 chr11 60864202 60864240 -87919232 - MIR SINE MIR -61 147 110 2353 93 3 0 chr11 60864329 60864639 -87918833 - AluSp SINE Alu -1 312 2 270 226 71 32 chr11 60865032 60865146 -87918326 - MIR SINE MIR -50 158 37 2303 71 3 40 chr11 60865263 60865586 -87917886 + AluSp SINE Alu 1 311 -2 2158 95 0 13 chr11 60865732 60866038 -87917434 + AluSg SINE Alu 1 302 -8 345 331 96 0 chr11 60866038 60866204 -87917268 + MIR SINE MIR 32 213 -49 * 863 200 52 57 chr11 60866202 60866432 -87917040 - MIR SINE MIR -2 260 32 1663 173 0 39 chr11 60866452 60866764 -87916708 + AluJo SINE Alu 3 302 -10 1033 108 0 0 chr11 60866775 60866914 -87916558 + AluSq/x SINE Alu 3 141 -172 2287 92 0 13 chr11 60866914 60867228 -87916244 + AluSx SINE Alu 1 310 -2 380 271 54 47 chr11 60867410 60867539 -87915933 - MLT1H LTR MaLR 0 549 420 1458 174 81 38 chr11 60867590 60867901 -87915571 - MLT2B1 LTR ERVL -2 513 132 2159 127 0 0 chr11 60867901 60868209 -87915263 - AluSx SINE Alu -4 308 1 1458 174 81 38 chr11 60868209 60868347 -87915125 - MLT2B1 LTR ERVL -383 132 1 2160 85 16 7 chr11 60868730 60869036 -87914436 - AluSc SINE Alu 0 309 1 216 218 0 18 chr11 60869292 60869347 -87914125 + GA-rich Low_complexity Low_complexity 1 54 0 2334 94 0 0 chr11 60870170 60870477 -87912995 + AluSq SINE Alu 1 307 -6 1818 125 0 43 chr11 60870699 60871002 -87912470 - AluSx SINE Alu -22 290 1 1307 177 29 4 chr11 60871005 60871248 -87912224 + MSTB LTR MaLR 178 426 0 378 226 12 0 chr11 60871248 60871332 -87912140 - L1ME LINE L1 -619 5545 5461 3428 93 108 16 chr11 60871373 60871526 -87911946 - MER41A LTR ERV1 0 554 417 2212 96 0 10 chr11 60871526 60871840 -87911632 - AluY SINE Alu 0 311 1 2052 109 3 3 chr11 60871840 60872133 -87911339 - AluSq SINE Alu -16 297 5 3428 93 108 16 chr11 60872133 60872485 -87910987 - MER41A LTR ERV1 -136 418 1 620 281 25 10 chr11 60873390 60873589 -87909883 + MIR SINE MIR 7 208 -54 392 140 0 0 chr11 60873602 60873659 -87909813 + AluSc SINE Alu 113 169 -130 609 123 0 0 chr11 60873659 60873786 -87909686 + AluY SINE Alu 203 329 0 1909 119 3 39 chr11 60873851 60874161 -87909311 - AluSx SINE Alu -12 300 2 292 234 51 42 chr11 60874185 60874320 -87909152 - MLT1L LTR MaLR 0 615 376 406 251 86 43 chr11 60874646 60874809 -87908663 - MIR3 SINE MIR -28 180 11 2316 226 19 29 chr11 60875325 60875864 -87907608 + Zaphod DNA AcHobo 136 679 -3352 2191 139 33 43 chr11 60875864 60876232 -87907240 + THE1B LTR MaLR 1 364 0 2316 226 19 29 chr11 60876232 60876341 -87907131 + Zaphod DNA AcHobo 679 779 -3252 1726 199 3 0 chr11 60876341 60876638 -87906834 - AluJo SINE Alu -14 298 1 2316 226 19 29 chr11 60876638 60876659 -87906813 + Zaphod DNA AcHobo 779 799 -3232 1756 150 8 0 chr11 60876665 60876931 -87906541 + AluSx SINE Alu 1 268 -44 272 258 17 75 chr11 60878767 60878887 -87904585 - MIR3 SINE MIR -15 193 81 2183 126 0 0 chr11 60879347 60879657 -87903815 + AluSg SINE Alu 1 310 0 338 176 187 33 chr11 60879689 60879706 -87903766 - L1ME4a LINE L1 -53 6068 6055 1628 140 98 3 chr11 60879706 60879991 -87903481 + AluSx SINE Alu 1 312 0 338 176 187 33 chr11 60879991 60880064 -87903408 - L1ME4a LINE L1 -66 6055 5964 289 299 23 46 chr11 60880485 60880572 -87902900 - MER5A DNA MER1_type -53 136 52 387 276 86 40 chr11 60880664 60880816 -87902656 - MER5A DNA MER1_type -14 175 17 307 218 81 48 chr11 60880908 60881032 -87902440 + MER5A DNA MER1_type 9 136 -53 292 330 75 27 chr11 60881043 60881231 -87902241 - MIR SINE MIR -38 224 28 296 206 63 0 chr11 60882622 60882685 -87900787 + L2 LINE L2 3244 3310 -3 2312 87 0 0 chr11 60883191 60883489 -87899983 + AluY SINE Alu 1 298 -13 258 119 0 0 chr11 60883489 60883531 -87899941 - MIR SINE MIR -76 132 91 2471 60 3 0 chr11 60884662 60884961 -87898511 - AluY SINE Alu -11 300 1 246 305 114 38 chr11 60885048 60885153 -87898319 - MIR SINE MIR -108 154 42 269 282 64 0 chr11 60885170 60885248 -87898224 + MIR SINE MIR 174 256 -6 2190 78 14 14 chr11 60885363 60885659 -87897813 + AluSx SINE Alu 1 296 -16 245 269 142 60 chr11 60885765 60885899 -87897573 + MIR SINE MIR 47 191 -71 209 370 24 24 chr11 60886976 60887103 -87896369 + L2 LINE L2 2727 2853 -461 275 298 105 16 chr11 60887687 60887811 -87895661 - MIR SINE MIR -10 252 118 198 271 0 0 chr11 60890497 60890545 -87892927 + MIR SINE MIR 40 87 -121 195 205 0 0 chr11 60890799 60890838 -87892634 - MIR SINE MIR -89 119 81 238 358 99 20 chr11 60893210 60893361 -87890111 - L2 LINE L2 -665 2649 2487 646 165 113 0 chr11 60893689 60893804 -87889668 - AluJb SINE Alu -17 295 168 2263 83 0 22 chr11 60893806 60894118 -87889354 - AluY SINE Alu -6 305 1 293 250 90 35 chr11 60894168 60894238 -87889234 + L1ME LINE L1 5600 5665 -456 1588 137 111 7 chr11 60894238 60894509 -87888963 + AluSg SINE Alu 1 299 -11 293 250 90 35 chr11 60894509 60894582 -87888890 + L1ME LINE L1 5665 5751 -370 1255 52 0 0 chr11 60894662 60894817 -87888655 - L1PA4 LINE L1 -2 6153 5999 1271 98 98 0 chr11 60894885 60895069 -87888403 + AluSx SINE Alu 1 202 -110 1968 110 3 3 chr11 60895562 60895864 -87887608 + AluSx SINE Alu 1 302 0 774 138 0 138 chr11 60896182 60896341 -87887131 + FLAM_C SINE Alu 1 137 -6 2085 109 23 13 chr11 60897034 60897338 -87886134 - AluSx SINE Alu -5 307 1 2112 102 10 3 chr11 60898295 60898588 -87884884 + AluSg SINE Alu 1 295 -15 2150 173 38 13 chr11 60899568 60900018 -87883454 + L1MB3 LINE L1 5684 6144 -39 974 79 8 0 chr11 60900044 60900170 -87883302 + AluSq/x SINE Alu 23 149 -164 1563 140 29 38 chr11 60901866 60902181 -87881291 - AluSx SINE Alu 0 312 1 2153 122 0 3 chr11 60902230 60902541 -87880931 - AluSg SINE Alu 0 310 1 272 258 17 75 chr11 60903001 60903121 -87880351 + MIR3 SINE MIR 81 193 -15 216 0 0 0 chr11 60905489 60905513 -87877959 + (GGGTG)n Simple_repeat Simple_repeat 3 26 0 329 323 76 0 chr11 60906399 60906557 -87876915 + MIR3 SINE MIR 24 193 -15 1115 136 0 47 chr11 60906563 60906754 -87876718 - AluJo SINE Alu 0 312 131 536 313 181 0 chr11 60907596 60907877 -87875595 - L2 LINE L2 -17 3255 2924 182 322 203 23 chr11 60908325 60908502 -87874970 - MIR SINE MIR -7 255 47 211 348 123 7 chr11 60909921 60910059 -87873413 - MIR SINE MIR -108 154 1 1426 235 0 3 chr11 60910668 60910970 -87872502 - AluJo SINE Alu -11 301 1 570 182 136 0 chr11 60910985 60911095 -87872377 - AluJo SINE Alu -187 125 1 207 69 0 0 chr11 60911105 60911134 -87872338 + (TC)n Simple_repeat Simple_repeat 2 30 0 400 195 23 0 chr11 60911402 60911489 -87871983 - MIR3 SINE MIR -32 176 88 289 367 0 57 chr11 60911733 60911891 -87871581 + MIR SINE MIR 76 224 -38 256 191 44 0 chr11 60911907 60911975 -87871497 + MIR3 SINE MIR 1 71 -137 653 324 115 42 chr11 60912033 60912441 -87871031 - L2 LINE L2 -2 3311 2874 548 53 13 0 chr11 60912551 60912627 -87870845 + (TGGA)n Simple_repeat Simple_repeat 1 77 0 3725 116 81 82 chr11 60912627 60913020 -87870452 - MER39 LTR ERV1 0 707 314 2268 92 3 3 chr11 60913020 60913323 -87870149 - AluSx SINE Alu -9 303 1 3725 116 81 82 chr11 60913323 60913637 -87869835 - MER39 LTR ERV1 -393 314 1 301 274 168 9 chr11 60914541 60914654 -87868818 + L2 LINE L2 3141 3271 -1 193 347 35 42 chr11 60914988 60915132 -87868340 + L3 LINE CR1 1089 1231 -346 291 28 0 0 chr11 60916884 60916920 -87866552 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2109 111 0 0 chr11 60916922 60917211 -87866261 - AluSx SINE Alu -23 289 1 2293 70 0 10 chr11 60917288 60917586 -87865886 - AluY SINE Alu -16 295 1 347 242 0 55 chr11 60917589 60917680 -87865792 - MIR SINE MIR -53 209 124 1371 91 37 99 chr11 60918112 60918382 -87865090 - AluSx SINE Alu 0 312 58 534 284 85 28 chr11 60919736 60919912 -87863560 - MIR SINE MIR -48 214 29 577 296 69 14 chr11 60920701 60920917 -87862555 + MIR SINE MIR 33 260 -2 320 303 132 24 chr11 60921089 60921273 -87862199 + MIR SINE MIR 18 224 -38 390 270 0 10 chr11 60921810 60921910 -87861562 + MIR SINE MIR 53 151 -111 556 221 178 5 chr11 60922164 60922362 -87861110 + MIR SINE MIR 18 254 -8 280 316 79 0 chr11 60923625 60923701 -87859771 + MIR3 SINE MIR 110 191 -17 1016 225 81 0 chr11 60923835 60924057 -87859415 - MIR SINE MIR -9 253 14 182 321 0 0 chr11 60924123 60924176 -87859296 + L2 LINE L2 3212 3264 -8 309 325 50 8 chr11 60924714 60924834 -87858638 - MIR SINE MIR -32 230 106 237 290 21 21 chr11 60925250 60925343 -87858129 - L2 LINE L2 -213 3059 2967 494 220 105 54 chr11 60926416 60926586 -87856886 - MIR SINE MIR -65 143 17 297 130 0 0 chr11 60928426 60928472 -87855000 - L2 LINE L2 -5 3267 3222 404 209 162 0 chr11 60929842 60929947 -87853525 - L2 LINE L2 -1 3312 3191 1004 216 31 36 chr11 60929950 60930018 -87853454 + MER58A DNA MER1_type 2 69 -2351 2344 84 0 0 chr11 60930018 60930315 -87853157 + AluSg SINE Alu 1 297 -13 1004 216 31 36 chr11 60930315 60930468 -87853004 + MER58A DNA MER1_type 69 222 -2 492 237 174 64 chr11 60930626 60930845 -87852627 - MIR SINE MIR -12 250 8 466 228 40 0 chr11 60931051 60931152 -87852320 - MIR SINE MIR -70 192 88 2104 110 0 0 chr11 60931208 60931489 -87851983 + AluSq SINE Alu 1 281 -32 688 281 28 0 chr11 60932594 60932772 -87850700 + MIR SINE MIR 79 261 -1 606 252 21 7 chr11 60932857 60933000 -87850472 - MIR SINE MIR -107 155 11 258 324 19 9 chr11 60933042 60933147 -87850325 - L2 LINE L2 -213 3059 2954 376 309 72 39 chr11 60933252 60933433 -87850039 - MIR SINE MIR -43 219 33 767 124 8 0 chr11 60935530 60935651 -87847821 - MIR3 SINE MIR -25 183 62 318 277 31 23 chr11 60936033 60936163 -87847309 + Charlie8 DNA MER1_type 13 143 -2274 220 79 48 95 chr11 60938354 60938417 -87845055 + (CAGCC)n Simple_repeat Simple_repeat 4 63 0 193 382 76 14 chr11 60938457 60938601 -87844871 + MIR SINE MIR 31 183 -79 1776 146 56 0 chr11 60938694 60938981 -87844491 + AluJo SINE Alu 1 303 -9 528 273 73 18 chr11 60940497 60940679 -87842793 + MIR SINE MIR 13 201 -56 187 309 165 0 chr11 60941367 60941464 -87842008 + MIR SINE MIR 60 172 -90 549 326 91 5 chr11 60941952 60942173 -87841299 - MIR SINE MIR -15 247 8 448 321 115 27 chr11 60942564 60942860 -87840612 - L2 LINE L2 -6 3307 2986 733 317 229 12 chr11 60942921 60943697 -87839775 - L2 LINE L2 -554 2760 1816 201 283 20 113 chr11 60944967 60945083 -87838389 + MIR SINE MIR 99 202 -50 222 343 14 0 chr11 60945822 60945892 -87837580 - L2 LINE L2 -210 3062 2992 378 327 30 12 chr11 60947245 60947410 -87836062 - MIR3 SINE MIR -8 200 33 384 316 55 7 chr11 60947985 60948138 -87835334 + MIR3 SINE MIR 48 204 -4 221 270 60 60 chr11 60949543 60949643 -87833829 - MIR3 SINE MIR -37 171 83 2350 95 0 0 chr11 60950509 60950815 -87832657 - AluSq SINE Alu -7 306 1 464 125 0 11 chr11 60951634 60951722 -87831750 + (TCCC)n Simple_repeat Simple_repeat 3 89 0 2483 52 7 3 chr11 60951986 60952293 -87831179 + AluY SINE Alu 1 308 -3 22 0 0 0 chr11 60955991 60956013 -87827459 + GC_rich Low_complexity Low_complexity 1 22 0 287 224 231 7 chr11 60956156 60956299 -87827173 - MER5A DNA MER1_type -6 183 9 263 279 74 25 chr11 60956938 60957060 -87826412 - MIR3 SINE MIR -37 171 44 188 340 43 11 chr11 60957137 60957231 -87826241 - MIR3 SINE MIR -43 165 69 1899 118 0 38 chr11 60959358 60959668 -87823804 - AluJo SINE Alu 0 308 10 1119 279 165 9 chr11 60959704 60960388 -87823084 - L2 LINE L2 0 3313 2505 2101 87 21 0 chr11 60960481 60960767 -87822705 + AluSx SINE Alu 1 292 -20 756 168 202 0 chr11 60960780 60960953 -87822519 - MER3 DNA MER1_type 0 209 2 564 241 103 0 chr11 60960964 60961109 -87822363 + MIR SINE MIR 103 262 0 289 213 24 31 chr11 60961411 60961607 -87821865 + (CGGGG)n Simple_repeat Simple_repeat 1 194 0 244 288 102 0 chr11 60964826 60964944 -87818528 + MIR3 SINE MIR 30 159 -49 319 354 50 50 chr11 60966141 60966381 -87817091 + MIR SINE MIR 3 242 -20 181 340 48 29 chr11 60966693 60966796 -87816676 - MIR SINE MIR -60 148 44 658 271 11 23 chr11 60967615 60967792 -87815680 + L2 LINE L2 3138 3312 -1 2262 104 7 0 chr11 60968290 60968597 -87814875 + AluSq SINE Alu 1 309 -4 2344 79 0 0 chr11 60968876 60969168 -87814304 - AluSg SINE Alu -18 292 1 215 336 168 7 chr11 60969614 60969757 -87813715 - MIR SINE MIR -66 196 31 202 189 0 0 chr11 60970303 60970340 -87813132 + G-rich Low_complexity Low_complexity 3 39 0 259 275 92 73 chr11 60970547 60970656 -87812816 - L2 LINE L2 -2 3270 3160 * 541 264 32 13 chr11 60970648 60970803 -87812669 + MIR SINE MIR 84 241 -21 244 307 134 43 chr11 60970935 60971166 -87812306 - L2 LINE L2 -212 3060 2809 265 266 243 45 chr11 60972105 60972282 -87811190 + MIR SINE MIR 34 245 -17 2317 93 0 3 chr11 60972483 60972793 -87810679 + AluSx SINE Alu 1 309 -3 219 215 47 41 chr11 60972793 60972857 -87810615 + L2 LINE L2 3186 3294 -19 621 293 6 11 chr11 60973249 60973430 -87810042 - MIR SINE MIR -52 210 31 279 260 214 13 chr11 60974137 60974291 -87809181 - MIR SINE MIR -70 192 8 307 314 57 7 chr11 60975291 60975431 -87808041 - L2 LINE L2 -530 2784 2638 307 338 141 0 chr11 60975803 60975970 -87807502 + MIR SINE MIR 2 187 -63 286 303 28 109 chr11 60976175 60976386 -87807086 - MIR SINE MIR -6 256 63 1921 134 41 0 chr11 60976445 60976737 -87806735 + AluJb SINE Alu 1 304 -8 2230 127 0 0 chr11 60976737 60977049 -87806423 + AluSx SINE Alu 13 312 0 227 290 65 56 chr11 60979634 60979741 -87803731 - MIR SINE MIR -56 152 45 2224 71 4 7 chr11 60980473 60980753 -87802719 - AluSg SINE Alu -30 280 2 23 0 0 0 chr11 60980758 60980781 -87802691 + AT_rich Low_complexity Low_complexity 1 23 0 1403 135 59 4 chr11 60982741 60982978 -87800494 - AluSx SINE Alu -14 298 49 2412 85 7 3 chr11 60985432 60985737 -87797735 + AluSq SINE Alu 1 306 -7 2058 120 11 0 chr11 60986098 60986374 -87797098 + AluSx SINE Alu 19 297 -15 479 265 105 11 chr11 60986429 60986610 -87796862 + MIR SINE MIR 41 238 -24 268 287 12 23 chr11 60986926 60987037 -87796435 + MIR SINE MIR 90 153 -55 405 0 0 0 chr11 60987821 60987866 -87795606 + (TG)n Simple_repeat Simple_repeat 2 46 0 1297 112 6 0 chr11 60988154 60988332 -87795140 - AluSp SINE Alu -4 309 131 216 0 0 0 chr11 60988597 60988621 -87794851 + (GGA)n Simple_repeat Simple_repeat 1 24 0 2295 79 11 0 chr11 60988748 60989058 -87794414 - AluSx SINE Alu 0 313 1 361 219 0 0 chr11 60989470 60989543 -87793929 + MIR SINE MIR 74 146 -116 1757 149 3 20 chr11 60990082 60990383 -87793089 - AluJo SINE Alu -16 296 1 189 0 0 0 chr11 60991647 60991668 -87791804 + (TGGGGG)n Simple_repeat Simple_repeat 1 21 0 1603 156 91 4 chr11 60992003 60992279 -87791193 + AluJo SINE Alu 1 300 -12 1666 140 47 19 chr11 60992298 60992619 -87790853 + L1MC1 LINE L1 5995 6324 -9 1651 171 13 42 chr11 60992818 60993020 -87790452 - AluJo SINE Alu 0 312 140 2155 129 3 0 chr11 60993020 60993322 -87790150 - AluSg SINE Alu -7 303 1 1651 171 13 42 chr11 60993322 60993459 -87790013 - AluJo SINE Alu -172 140 1 1615 182 49 3 chr11 60993641 60993927 -87789545 - AluJb SINE Alu -13 299 1 29 0 0 0 chr11 60993937 60993966 -87789506 + AT_rich Low_complexity Low_complexity 1 29 0 2272 111 0 35 chr11 60993976 60994292 -87789180 + AluSx SINE Alu 1 305 -7 727 183 0 8 chr11 60994305 60994417 -87789055 + FLAM_C SINE Alu 1 113 -189 261 0 0 0 chr11 60994417 60994446 -87789026 + (TC)n Simple_repeat Simple_repeat 2 30 0 188 65 0 32 chr11 60994618 60994649 -87788823 + (CCCCAG)n Simple_repeat Simple_repeat 1 30 0 226 303 34 0 chr11 60995040 60995129 -87788343 + MIR3 SINE MIR 97 188 -20 2298 82 4 7 chr11 60995243 60995552 -87787920 + AluSq SINE Alu 3 310 0 214 348 33 0 chr11 60995683 60995775 -87787697 + L2 LINE L2 3171 3265 -7 531 290 112 23 chr11 60995778 60996037 -87787435 + L2 LINE L2 2925 3206 -107 339 250 52 0 chr11 60996093 60996189 -87787283 + L2 LINE L2 2842 2942 -330 387 248 35 28 chr11 60996804 60996945 -87786527 + MIR3 SINE MIR 11 152 -56 263 301 102 28 chr11 60997366 60997542 -87785930 - MER5A DNA MER1_type 0 189 1 1131 54 0 148 chr11 60997665 60997868 -87785604 - L1PA8 LINE L1 -8 6164 5992 215 173 99 0 chr11 60998070 60998123 -87785349 + MIR SINE MIR 105 164 -98 430 275 18 0 chr11 60998164 60998273 -87785199 - MER5B DNA MER1_type -42 136 26 321 198 24 0 chr11 60998378 60998504 -87784968 + (TA)n Simple_repeat Simple_repeat 2 130 0 1573 187 40 7 chr11 60998510 60998788 -87784684 - AluJb SINE Alu -25 287 1 314 349 122 18 chr11 60999504 60999733 -87783739 - L2 LINE L2 -94 3178 2926 425 271 79 14 chr11 60999765 60999905 -87783567 - MIR SINE MIR -113 149 1 822 96 0 0 chr11 61000004 61000108 -87783364 - AluSx SINE Alu -15 297 194 1149 99 0 0 chr11 61000109 61000250 -87783222 - AluSx SINE Alu -171 141 1 390 203 14 0 chr11 61001204 61001278 -87782194 - MIR3 SINE MIR -49 159 85 248 260 41 0 chr11 61001439 61001512 -87781960 - MIR SINE MIR -18 244 169 2140 126 0 13 chr11 61001751 61002053 -87781419 + AluSq SINE Alu 1 298 -15 258 225 25 12 chr11 61002068 61002148 -87781324 + MER53 DNA DNA 14 94 -95 757 207 0 47 chr11 61002303 61002472 -87781000 + AluJo SINE Alu 124 284 -28 933 57 0 21 chr11 61002474 61002614 -87780858 + (GGAA)n Simple_repeat Simple_repeat 3 139 0 227 75 0 0 chr11 61002860 61002900 -87780572 - L1ME4a LINE L1 -120 6001 5962 5274 192 162 114 chr11 61002937 61004207 -87779265 - L1P5 LINE L1 -634 5753 4545 409 218 0 0 chr11 61004207 61004285 -87779187 + AluJ/FLAM SINE Alu 2 79 -233 5274 192 162 114 chr11 61004285 61004303 -87779169 - L1P5 LINE L1 -1842 4545 4529 2179 46 0 15 chr11 61004303 61004553 -87778919 - SVA Other Other 0 1386 1139 2229 124 0 0 chr11 61004553 61004851 -87778621 - AluSq SINE Alu -15 298 1 5274 192 162 114 chr11 61004860 61005017 -87778455 - L1P5 LINE L1 -1858 4529 4381 2436 82 0 0 chr11 61005017 61005309 -87778163 - AluY SINE Alu -19 292 1 5274 192 162 114 chr11 61005309 61005665 -87777807 - L1P5 LINE L1 -2006 4381 4043 1829 186 3 13 chr11 61005665 61005841 -87777631 - AluJo SINE Alu -3 309 136 2199 107 10 10 chr11 61005841 61006139 -87777333 - AluSx SINE Alu -14 298 1 1829 186 3 13 chr11 61006139 61006274 -87777198 - AluJo SINE Alu -176 136 1 5274 192 162 114 chr11 61006274 61006312 -87777160 - L1P5 LINE L1 -2344 4043 4008 2500 81 3 3 chr11 61006312 61006620 -87776852 - AluSp SINE Alu -5 308 1 1008 158 0 6 chr11 61006626 61006784 -87776688 - FRAM SINE Alu -21 155 1 1941 162 0 23 chr11 61006792 61007100 -87776372 - AluJo SINE Alu 0 312 12 5274 192 162 114 chr11 61007100 61007812 -87775660 - L1P5 LINE L1 -2389 3998 3321 234 0 0 0 chr11 61007812 61007838 -87775634 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2164 138 3 0 chr11 61007840 61008136 -87775336 - AluSx SINE Alu -15 297 1 5274 192 162 114 chr11 61008136 61008389 -87775083 - L1P5 LINE L1 -3066 3321 3081 1045 186 151 16 chr11 61008389 61008523 -87774949 - AluJo SINE Alu -16 286 171 183 42 0 0 chr11 61008523 61008547 -87774925 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1045 186 151 16 chr11 61008547 61008664 -87774808 - AluJo SINE Alu -131 171 1 5274 192 162 114 chr11 61008664 61008781 -87774691 - L1P5 LINE L1 -3306 3081 2421 766 89 0 0 chr11 61008785 61008886 -87774586 - U6 snRNA snRNA -6 101 1 2296 184 117 90 chr11 61008886 61009179 -87774293 - L1M4c LINE L1 -3931 2715 2431 1512 199 29 7 chr11 61009179 61009460 -87774012 + AluJo SINE Alu 1 287 -25 2296 184 117 90 chr11 61009460 61010136 -87773336 - L1M4c LINE L1 -4215 2431 1720 578 154 0 2 chr11 61010138 61010379 -87773093 + AluSx SINE Alu 1 298 -11 4004 205 17 78 chr11 61010402 61010965 -87772507 - L1M4c LINE L1 -4831 1711 1116 2158 134 0 0 chr11 61010965 61011256 -87772216 + AluSx SINE Alu 1 291 -21 4004 205 17 78 chr11 61011256 61011333 -87772139 - L1M4c LINE L1 -5426 1116 1036 2207 117 23 0 chr11 61011333 61011633 -87771839 - AluSg SINE Alu -3 307 1 4004 205 17 78 chr11 61011633 61011822 -87771650 - L1M4c LINE L1 -5506 1036 837 216 0 0 0 chr11 61011822 61011846 -87771626 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4004 205 17 78 chr11 61011846 61012224 -87771248 - L1M4c LINE L1 -5705 837 575 330 282 27 27 chr11 61012233 61012343 -87771129 - L1MCa LINE L1 -4321 2105 1996 * 343 290 0 32 chr11 61012328 61012421 -87771051 + L1MC4 LINE L1 6614 6703 -1339 363 136 0 0 chr11 61012423 61012482 -87770990 + (TG)n Simple_repeat Simple_repeat 2 60 0 885 212 0 0 chr11 61012494 61012640 -87770832 + FRAM SINE Alu 1 146 -30 785 250 0 0 chr11 61012641 61012821 -87770651 - MLT1D-int LTR MaLR -912 459 280 1437 164 0 0 chr11 61012831 61013045 -87770427 - AluSg/x SINE Alu -4 308 95 891 152 19 0 chr11 61013067 61013225 -87770247 - MLT1D-int LTR MaLR -1210 161 1 1525 229 120 20 chr11 61013225 61013684 -87769788 - MLT1D LTR MaLR 0 505 1 399 275 78 56 chr11 61013686 61013733 -87769739 + L1ME3A LINE L1 5782 5827 -343 2330 107 3 0 chr11 61013733 61014032 -87769440 + AluSg SINE Alu 1 300 -10 399 275 78 56 chr11 61014032 61014126 -87769346 + L1ME3A LINE L1 5827 5926 -244 423 233 60 17 chr11 61014200 61014316 -87769156 + L2 LINE L2 3192 3312 -1 313 139 0 0 chr11 61014399 61014442 -87769030 - Alu SINE Alu -256 44 2 1916 238 147 83 chr11 61014445 61014530 -87768942 - HAL1 LINE L1 -1158 1349 1271 2566 70 0 0 chr11 61014530 61014832 -87768640 - AluY SINE Alu -9 302 1 1916 238 147 83 chr11 61014832 61015754 -87767718 - HAL1 LINE L1 -1236 1271 278 350 242 53 79 chr11 61015793 61016020 -87767452 - L1MEd LINE L1 -3595 2534 2314 2070 113 7 0 chr11 61016020 61016295 -87767177 - AluJb SINE Alu -25 287 11 656 141 74 7 chr11 61016391 61016540 -87766932 - L1MB3 LINE L1 -11 6172 6014 1950 154 6 16 chr11 61016606 61016918 -87766554 + AluSq SINE Alu 1 309 -4 2232 98 3 10 chr11 61016918 61017212 -87766260 + AluSc SINE Alu 1 293 -16 1816 133 40 33 chr11 61017267 61017568 -87765904 - AluSx SINE Alu -9 303 1 1143 124 5 0 chr11 61017575 61017777 -87765695 + L1MA4 LINE L1 6096 6298 -2 492 296 34 52 chr11 61017781 61018105 -87765367 - L1MEd LINE L1 -5241 878 561 260 329 48 53 chr11 61018745 61018859 -87764613 + L2 LINE L2 2678 2792 -522 2090 138 123 5 chr11 61018859 61019242 -87764230 - MSTA LTR MaLR 0 428 1 260 329 48 53 chr11 61019242 61019334 -87764138 + L2 LINE L2 2792 2883 -431 1825 138 24 106 chr11 61019440 61019690 -87763782 - MSTB LTR MaLR 0 426 157 1750 124 29 0 chr11 61019690 61019931 -87763541 + AluSx SINE Alu 1 248 -64 1825 138 24 106 chr11 61019931 61019984 -87763488 - MSTB LTR MaLR -269 157 101 2191 104 10 3 chr11 61019984 61020272 -87763200 + AluSg SINE Alu 1 290 -20 1825 138 24 106 chr11 61020272 61020431 -87763041 - MSTB LTR MaLR -325 101 1 301 278 174 0 chr11 61020465 61020580 -87762892 + L2 LINE L2 3178 3312 -1 234 0 0 0 chr11 61020706 61020732 -87762740 + (T)n Simple_repeat Simple_repeat 1 26 0 291 381 30 10 chr11 61020864 61021189 -87762283 + L2 LINE L2 2661 2990 -323 2211 118 0 7 chr11 61021190 61021487 -87761985 - AluSx SINE Alu -17 295 1 422 284 50 73 chr11 61021560 61021792 -87761680 + MIR SINE MIR 1 220 -42 300 343 30 0 chr11 61022582 61022716 -87760756 + MIR SINE MIR 16 153 -55 263 217 167 0 chr11 61023547 61023607 -87759865 + MIR3 SINE MIR 86 155 -53 2418 90 3 6 chr11 61024286 61024598 -87758874 - AluSp SINE Alu -2 311 1 2033 82 18 94 chr11 61024601 61024930 -87758542 - AluY SINE Alu -7 304 1 552 187 9 19 chr11 61024972 61025079 -87758393 - MIR SINE MIR -57 151 46 369 265 128 0 chr11 61025467 61025584 -87757888 - MIR SINE MIR -119 143 12 939 168 122 46 chr11 61025628 61025825 -87757647 + AluJo SINE Alu 100 311 -1 26 30 0 0 chr11 61025851 61025884 -87757588 + AT_rich Low_complexity Low_complexity 1 33 0 2470 76 3 0 chr11 61025887 61026191 -87757281 - AluSp SINE Alu -4 309 5 322 344 0 16 chr11 61026898 61027020 -87756452 - MIR3 SINE MIR -44 164 45 213 235 25 118 chr11 61027809 61027928 -87755544 - L2 LINE L2 -4 3268 3161 385 351 53 0 chr11 61028003 61028154 -87755318 + MER91A DNA MER1_type 2 160 -36 358 289 74 0 chr11 61028200 61028321 -87755151 + L2 LINE L2 3184 3313 0 24 32 0 0 chr11 61029207 61029238 -87754234 + GC_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr11 61029986 61030007 -87753465 + GC_rich Low_complexity Low_complexity 1 21 0 2151 112 0 0 chr11 61030479 61030774 -87752698 - AluSx SINE Alu -17 295 1 2277 71 20 3 chr11 61030788 61031082 -87752390 - AluY SINE Alu -12 299 1 205 281 0 73 chr11 61031625 61031707 -87751765 + L2 LINE L2 3195 3270 -2 191 121 30 0 chr11 61032030 61032063 -87751409 + MIR SINE MIR 111 144 -64 321 211 0 0 chr11 61032603 61032660 -87750812 + MIR SINE MIR 70 126 -82 193 188 0 0 chr11 61033087 61033119 -87750353 + L2 LINE L2 3264 3295 -18 192 233 0 47 chr11 61033119 61033130 -87750342 + MIR SINE MIR 219 259 -3 292 289 22 0 chr11 61034167 61034257 -87749215 + MIR SINE MIR 49 140 -68 464 239 26 0 chr11 61036655 61036768 -87746704 + MIR SINE MIR 30 145 -63 450 160 0 0 chr11 61036795 61036870 -87746602 - AluS SINE Alu -7 304 230 1187 70 0 0 chr11 61036870 61037013 -87746459 - AluSq/x SINE Alu -170 143 1 212 276 146 41 chr11 61037415 61037538 -87745934 - MIR3 SINE MIR -68 140 5 240 225 42 0 chr11 61037859 61037930 -87745542 - MIR SINE MIR -77 131 58 199 361 0 46 chr11 61038246 61038354 -87745118 - L2 LINE L2 -11 3302 3200 189 287 96 11 chr11 61038364 61038458 -87745014 - MIR SINE MIR -72 190 89 304 238 28 24 chr11 61039759 61039843 -87743629 + MIR3 SINE MIR 71 155 -53 363 250 14 0 chr11 61039922 61040028 -87743444 + MIR SINE MIR 73 145 -63 242 298 11 43 chr11 61040903 61040997 -87742475 + MIR SINE MIR 56 146 -62 255 61 0 0 chr11 61041256 61041289 -87742183 + (TCTG)n Simple_repeat Simple_repeat 3 35 0 385 273 132 14 chr11 61042737 61042957 -87740515 - L2 LINE L2 -223 3049 2804 2178 118 0 3 chr11 61043013 61043310 -87740162 + AluSx SINE Alu 1 296 -16 1998 133 16 13 chr11 61044497 61044805 -87738667 - AluSx SINE Alu -3 309 1 199 254 42 14 chr11 61044816 61044887 -87738585 - MIR SINE MIR -68 140 68 1068 259 95 14 chr11 61044887 61045304 -87738168 - MLT1E3 LTR MaLR -5 619 121 419 223 216 4 chr11 61046524 61046867 -87736605 - LTR16A1 LTR ERVL 0 457 1 189 0 0 0 chr11 61047254 61047275 -87736197 + (CTG)n Simple_repeat Simple_repeat 2 22 0 207 186 0 0 chr11 61049138 61049181 -87734291 + CT-rich Low_complexity Low_complexity 1 43 0 595 260 159 0 chr11 61050836 61051044 -87732428 - MIR SINE MIR -19 243 3 337 255 43 11 chr11 61051341 61051435 -87732037 + MIR3 SINE MIR 81 177 -31 2732 167 67 32 chr11 61051445 61051486 -87731986 - L1MB2 LINE L1 -4 6167 6129 1940 112 0 65 chr11 61051486 61051826 -87731646 - AluSx SINE Alu 0 312 1 2732 167 67 32 chr11 61051826 61052162 -87731310 - L1MB2 LINE L1 -42 6129 5755 2049 108 29 10 chr11 61052162 61052468 -87731004 - AluSp SINE Alu -1 312 1 2732 167 67 32 chr11 61052468 61052747 -87730725 - L1MB2 LINE L1 -416 5755 5487 1659 138 46 28 chr11 61052749 61053031 -87730441 - AluJb SINE Alu -24 288 2 781 137 0 8 chr11 61053035 61053159 -87730313 - FLAM_C SINE Alu 0 143 21 568 194 23 6 chr11 61053160 61053306 -87730166 - L1P4 LINE L1 -678 5488 5346 395 229 209 20 chr11 61053973 61054126 -87729346 + MER5A DNA MER1_type 5 186 -3 1690 130 23 43 chr11 61054291 61054590 -87728882 + AluJb SINE Alu 3 295 -17 28 79 0 0 chr11 61055202 61055265 -87728207 + GC_rich Low_complexity Low_complexity 1 63 0 239 127 36 18 chr11 61055320 61055375 -87728097 + (CGG)n Simple_repeat Simple_repeat 1 56 0 180 111 0 0 chr11 61056695 61056722 -87726750 + (A)n Simple_repeat Simple_repeat 1 27 0 817 145 0 35 chr11 61056980 61057125 -87726347 - FLAM_C SINE Alu -3 140 1 2211 58 14 4 chr11 61057192 61057469 -87726003 - AluSg SINE Alu -30 280 1 2300 76 3 10 chr11 61057642 61057945 -87725527 + AluSp SINE Alu 1 301 -12 385 298 0 18 chr11 61057958 61058072 -87725400 + MIR3 SINE MIR 48 159 -49 615 265 92 42 chr11 61058800 61059038 -87724434 - MIR SINE MIR -12 250 1 249 329 0 12 chr11 61059069 61059151 -87724321 - L2 LINE L2 -5 3308 3228 546 319 81 19 chr11 61059158 61059481 -87723991 - L2 LINE L2 -338 2976 2634 285 259 30 0 chr11 61059635 61059710 -87723762 + MIR SINE MIR 77 146 -62 545 209 116 0 chr11 61060014 61060143 -87723329 - MIR SINE MIR 0 262 119 323 151 164 0 chr11 61060815 61060888 -87722584 + MIR SINE MIR 79 163 -99 424 345 59 5 chr11 61061389 61061592 -87721880 - MIR SINE MIR -16 246 33 381 200 75 42 chr11 61061720 61061840 -87721632 + MIR SINE MIR 20 143 -65 324 281 31 13 chr11 61062327 61062353 -87721119 + MIR SINE MIR 13 37 -171 1921 89 8 4 chr11 61062353 61062611 -87720861 - L1PA8 LINE L1 0 6172 5914 324 281 31 13 chr11 61062611 61062695 -87720777 + MIR SINE MIR 37 128 -80 2144 162 27 8 chr11 61063439 61063809 -87719663 + L1MB3 LINE L1 5806 6182 -1 2000 147 0 0 chr11 61063811 61064118 -87719354 + AluSx SINE Alu 1 307 -5 1665 176 4 4 chr11 61064131 61064409 -87719063 + AluJo SINE Alu 12 289 -23 2015 131 6 16 chr11 61064427 61064740 -87718732 + AluJb SINE Alu 1 310 -2 207 266 13 25 chr11 61065519 61065598 -87717874 + CT-rich Low_complexity Low_complexity 6 83 0 843 147 0 37 chr11 61065673 61065809 -87717663 - FLAM_C SINE Alu -2 131 1 863 124 9 2 chr11 61065837 61066083 -87717389 + AluSx SINE Alu 1 296 -16 212 276 17 26 chr11 61066560 61066676 -87716796 + (TCTG)n Simple_repeat Simple_repeat 1 115 0 234 207 0 0 chr11 61067613 61067671 -87715801 + (TGAA)n Simple_repeat Simple_repeat 3 60 0 279 253 46 23 chr11 61067794 61067881 -87715591 + MIR3 SINE MIR 81 169 -39 186 352 56 0 chr11 61070039 61070110 -87713362 + MIR SINE MIR 117 191 -71 654 126 126 44 chr11 61071188 61071306 -87712166 - LTR47A LTR ERVL -4 448 316 2010 98 6 60 chr11 61071306 61071622 -87711850 + AluSx SINE Alu 1 299 -13 654 126 126 44 chr11 61071622 61071638 -87711834 - LTR47A LTR ERVL -136 316 303 470 302 29 50 chr11 61071876 61072154 -87711318 - L2 LINE L2 -94 3219 2948 361 324 95 0 chr11 61072210 61072389 -87711083 - L2 LINE L2 -582 2732 2537 186 345 0 11 chr11 61074961 61075048 -87708424 + MIR SINE MIR 26 111 -151 243 280 103 47 chr11 61075157 61075264 -87708208 + MIR3 SINE MIR 77 189 -19 199 242 77 55 chr11 61078067 61078158 -87705314 + MIR SINE MIR 7 99 -163 2085 79 22 14 chr11 61078282 61078448 -87705024 - AluSc SINE Alu 0 303 133 2355 60 7 7 chr11 61078448 61078749 -87704723 - AluY SINE Alu -10 301 1 1414 111 0 5 chr11 61078749 61078883 -87704589 - AluSc SINE Alu -176 133 1 2085 79 22 14 chr11 61078749 61078883 -87704589 - AluSc SINE Alu -170 133 1 1684 139 0 94 chr11 61081864 61082000 -87701472 + AluJo SINE Alu 6 153 -159 2172 118 0 9 chr11 61082000 61082315 -87701157 + AluSx SINE Alu 1 312 0 1684 139 0 94 chr11 61082315 61082508 -87700964 + AluJo SINE Alu 153 304 -8 249 397 80 0 chr11 61084770 61084921 -87698551 - L2 LINE L2 -665 2649 2487 1216 165 103 22 chr11 61085202 61085325 -87698147 - AluJb SINE Alu -17 295 183 2364 85 0 0 chr11 61085325 61085632 -87697840 - AluY SINE Alu -4 307 1 1216 165 103 22 chr11 61085632 61085781 -87697691 - AluJb SINE Alu -129 183 1 1791 123 46 11 chr11 61085785 61086069 -87697403 - AluJo SINE Alu -18 294 1 185 301 114 32 chr11 61086118 61086337 -87697135 - L2 LINE L2 -1198 2116 1880 780 222 87 29 chr11 61086400 61086607 -87696865 - MER20 DNA MER1_type 0 219 1 1731 88 0 4 chr11 61086771 61086999 -87696473 - AluSg SINE Alu -82 228 2 313 372 78 31 chr11 61087020 61087278 -87696194 - L2 LINE L2 -797 2517 2248 2305 95 3 0 chr11 61087348 61087654 -87695818 + AluSp SINE Alu 1 307 -6 2270 72 3 0 chr11 61087823 61088113 -87695359 + AluSg SINE Alu 2 292 -18 1904 137 37 3 chr11 61088226 61088525 -87694947 + AluSq SINE Alu 1 309 -4 598 227 23 109 chr11 61088525 61088781 -87694691 + MLT1B LTR MaLR 157 390 0 218 239 130 11 chr11 61089963 61090055 -87693417 - MIR SINE MIR -135 127 25 211 205 0 0 chr11 61090051 61090090 -87693382 + L2 LINE L2 3231 3269 -3 * 191 293 0 15 chr11 61090403 61090471 -87693001 - MER5B DNA MER1_type -67 122 44 195 345 11 11 chr11 61090871 61090958 -87692514 - MIR3 SINE MIR -1 207 121 583 355 28 0 chr11 61092215 61092432 -87691040 + MIR SINE MIR 32 254 -8 484 118 0 32 chr11 61093356 61093449 -87690023 + (GGAA)n Simple_repeat Simple_repeat 2 91 0 485 341 51 67 chr11 61093452 61093488 -87689984 + L1M4 LINE L1 4152 4187 -1959 2147 92 0 7 chr11 61093488 61093818 -87689654 - AluY SINE Alu 0 311 1 485 341 51 67 chr11 61093818 61094130 -87689342 + L1M4 LINE L1 4187 4496 -1650 2139 138 0 0 chr11 61094130 61094441 -87689031 + AluSx SINE Alu 1 311 -1 485 341 51 67 chr11 61094441 61094463 -87689009 + L1M4 LINE L1 4496 4517 -1629 2145 100 0 0 chr11 61096142 61096451 -87687021 + AluSg SINE Alu 1 309 0 1877 167 0 6 chr11 61096631 61096943 -87686529 - AluJo SINE Alu -2 310 1 308 309 27 18 chr11 61096950 61097060 -87686412 + L1ME4a LINE L1 5922 6032 -89 1220 140 14 54 chr11 61097086 61097308 -87686164 - AluJo SINE Alu -14 298 86 276 374 11 84 chr11 61097405 61097496 -87685976 + MIR3 SINE MIR 6 77 -131 2107 105 14 3 chr11 61097496 61097792 -87685680 + AluSg SINE Alu 1 299 -11 276 374 11 84 chr11 61097792 61097890 -87685582 + MIR3 SINE MIR 77 181 -27 252 333 0 13 chr11 61098722 61098797 -87684675 + MIR3 SINE MIR 98 171 -37 2072 219 23 37 chr11 61098917 61099457 -87684015 + L1MB8 LINE L1 5612 6145 -33 2041 90 58 0 chr11 61099457 61099735 -87683737 + AluSx SINE Alu 1 294 -18 2072 219 23 37 chr11 61099735 61099757 -87683715 + L1MB8 LINE L1 6145 6166 -12 210 229 21 0 chr11 61100247 61100295 -87683177 + GA-rich Low_complexity Low_complexity 1 49 0 1579 144 61 4 chr11 61100306 61100569 -87682903 + AluSx SINE Alu 35 312 0 2256 95 30 0 chr11 61100873 61101177 -87682295 - AluSq SINE Alu 0 313 1 228 243 122 0 chr11 61101308 61101382 -87682090 - L2 LINE L2 -30 3283 3201 261 0 0 0 chr11 61101626 61101655 -87681817 + (A)n Simple_repeat Simple_repeat 1 29 0 2286 103 0 0 chr11 61101731 61102042 -87681430 - AluY SINE Alu 0 311 1 1858 120 78 0 chr11 61102113 61102397 -87681075 - AluSx SINE Alu -6 306 1 712 101 0 187 chr11 61102640 61102725 -87680747 - MER96B DNA MER1_type? -239 178 157 2279 93 0 7 chr11 61102725 61103026 -87680446 + AluSp SINE Alu 1 299 -14 712 101 0 187 chr11 61103026 61103159 -87680313 - MER96B DNA MER1_type? -260 157 1 1857 160 0 0 chr11 61103244 61103538 -87679934 - AluJo SINE Alu -18 294 1 931 123 0 36 chr11 61105130 61105268 -87678204 - FLAM_A SINE Alu 0 133 1 2073 119 7 3 chr11 61105336 61105630 -87677842 + AluSg SINE Alu 1 295 -15 2138 176 38 13 chr11 61106609 61107059 -87676413 + L1MB3 LINE L1 5684 6144 -39 2163 97 3 0 chr11 61107085 61107374 -87676098 + AluSq SINE Alu 23 312 -1 328 277 98 11 chr11 61109566 61109750 -87673722 - L1ME4a LINE L1 0 6121 5922 295 298 70 70 chr11 61109928 61110017 -87673455 + L1MC4 LINE L1 7560 7648 -394 1539 145 93 7 chr11 61110017 61110286 -87673186 + AluJo SINE Alu 1 292 -20 2030 130 0 0 chr11 61110288 61110596 -87672876 + AluSx SINE Alu 1 308 0 295 298 70 70 chr11 61110596 61110985 -87672487 + L1MC4 LINE L1 7648 8042 0 1898 81 11 46 chr11 61111005 61111288 -87672184 + AluSx SINE Alu 25 297 -15 201 254 0 15 chr11 61111626 61111693 -87671779 + GA-rich Low_complexity Low_complexity 1 66 0 197 281 18 18 chr11 61112302 61112359 -87671113 - MIR SINE MIR -187 75 19 497 386 38 11 chr11 61112503 61112767 -87670705 + L2 LINE L2 3003 3273 -40 201 348 152 0 chr11 61112994 61113106 -87670366 - MIR SINE MIR -51 211 83 225 184 0 0 chr11 61114307 61114345 -87669127 - MIR SINE MIR -139 69 32 209 235 123 25 chr11 61114618 61114699 -87668773 + L2 LINE L2 3176 3264 -8 181 306 42 28 chr11 61114878 61114950 -87668522 + MIR SINE MIR 28 100 -162 275 327 44 96 chr11 61120552 61120759 -87662713 - L2 LINE L2 -585 2729 2513 2104 58 0 4 chr11 61120759 61121018 -87662454 - AluY SINE Alu -21 290 33 2399 91 0 0 chr11 61121018 61121325 -87662147 - AluSx SINE Alu -4 308 1 275 327 44 96 chr11 61121325 61121544 -87661928 - L2 LINE L2 -799 2515 2324 315 143 0 0 chr11 61121544 61121593 -87661879 + Alu SINE Alu 1 49 -254 1177 103 0 0 chr11 61121594 61121750 -87661722 - AluSc SINE Alu -153 156 1 984 41 0 0 chr11 61122132 61122253 -87661219 + (TC)n Simple_repeat Simple_repeat 2 122 0 2139 110 3 3 chr11 61122253 61122547 -87660925 - AluSx SINE Alu -17 295 2 1874 135 3 26 chr11 61122831 61123135 -87660337 + AluJb SINE Alu 1 297 -15 479 306 100 6 chr11 61123196 61123376 -87660096 - MIR3 SINE MIR -9 199 3 454 266 68 5 chr11 61123643 61123850 -87659622 + L1ME LINE L1 5571 5790 -331 2324 81 0 0 chr11 61124379 61124676 -87658796 + AluY SINE Alu 1 297 -14 774 138 0 138 chr11 61125251 61125410 -87658062 - FLAM_C SINE Alu -6 137 1 1979 106 3 3 chr11 61125728 61126030 -87657442 - AluSx SINE Alu 0 302 1 1271 98 98 0 chr11 61126523 61126707 -87656765 - AluSq SINE Alu -111 202 1 1255 52 0 0 chr11 61126775 61126930 -87656542 + L1PA4 LINE L1 5999 6153 -2 293 250 90 35 chr11 61127010 61127083 -87656389 - L1ME LINE L1 -370 5751 5684 1588 137 111 7 chr11 61127083 61127354 -87656118 - AluSg SINE Alu -11 299 1 293 250 90 35 chr11 61127354 61127424 -87656048 - L1ME LINE L1 -437 5684 5600 2315 74 0 13 chr11 61127474 61127773 -87655699 + AluY SINE Alu 1 295 -16 411 332 152 27 chr11 61127925 61128253 -87655219 - L1ME1 LINE L1 -236 5930 5562 296 313 12 0 chr11 61128364 61128444 -87655028 + MIR3 SINE MIR 82 162 -46 849 209 93 11 chr11 61128592 61128823 -87654649 + MIR SINE MIR 14 256 -6 25 31 0 0 chr11 61131456 61131488 -87651984 + GC_rich Low_complexity Low_complexity 1 32 0 1730 145 171 20 chr11 61131786 61132194 -87651278 + LTR12 LTR ERV1 1 714 0 613 146 0 0 chr11 61132433 61132536 -87650936 - LTR12 LTR ERV1 0 714 612 333 235 20 0 chr11 61132536 61132634 -87650838 - LTR30 LTR ERV1 -80 642 543 2481 30 7 16 chr11 61132661 61132965 -87650507 - AluY SINE Alu -10 301 1 1053 113 254 0 chr11 61132970 61133183 -87650289 - LTR12 LTR ERV1 -447 267 1 406 241 21 26 chr11 61133692 61133845 -87649627 - MIR SINE MIR -57 151 3 836 112 64 0 chr11 61134636 61134761 -87648711 + AluSq/x SINE Alu 1 133 -179 1898 114 25 0 chr11 61134761 61135041 -87648431 + AluSq SINE Alu 1 287 -26 2134 95 7 10 chr11 61135043 61135338 -87648134 + AluSq SINE Alu 1 294 -19 391 260 10 10 chr11 61135352 61135452 -87648020 - MIR SINE MIR -73 135 36 915 150 20 7 chr11 61137145 61137298 -87646174 + FRAM SINE Alu 4 158 -8 580 274 228 40 chr11 61137398 61137903 -87645569 - L2 LINE L2 -256 3057 2480 2131 128 0 0 chr11 61138296 61138594 -87644878 - AluSx SINE Alu -14 298 1 488 242 33 52 chr11 61138594 61138747 -87644725 + L2 LINE L2 3163 3312 -1 2198 97 3 3 chr11 61139280 61139579 -87643893 + AluSp SINE Alu 1 299 -14 2722 16 0 6 chr11 61140277 61140589 -87642883 - AluYb8 SINE Alu -8 310 1 791 207 0 0 chr11 61140774 61140909 -87642563 + FRAM SINE Alu 27 161 -15 1311 74 0 0 chr11 61144582 61144745 -87638727 + AluSg/x SINE Alu 135 297 -13 942 169 6 17 chr11 61146268 61146440 -87637032 + FRAM SINE Alu 1 169 -7 607 191 0 50 chr11 61147333 61147474 -87635998 - AluJb SINE Alu 0 312 179 2269 104 3 3 chr11 61147476 61147785 -87635687 - AluSq SINE Alu -4 309 1 1816 136 11 7 chr11 61148179 61148459 -87635013 + AluJo SINE Alu 25 305 -7 235 159 0 0 chr11 61151685 61151729 -87631743 + MLT2C2 LTR ERVL 419 462 -2 296 280 0 0 chr11 61151998 61152098 -87631374 + MER113 DNA MER1_type? 1 100 -421 1553 91 0 41 chr11 61152217 61152437 -87631035 + AluSc SINE Alu 83 293 -16 889 211 0 0 chr11 61152494 61152660 -87630812 + FRAM SINE Alu 1 166 0 212 172 35 17 chr11 61152948 61153006 -87630466 + (TTAA)n Simple_repeat Simple_repeat 4 62 0 330 364 86 0 chr11 61153033 61153184 -87630288 + MIR SINE MIR 48 211 -51 308 238 86 46 chr11 61153376 61153527 -87629945 - MIR SINE MIR -84 178 22 184 266 94 16 chr11 61154548 61154612 -87628860 + L2 LINE L2 3186 3254 -18 2015 96 7 33 chr11 61155057 61155359 -87628113 + AluSg SINE Alu 1 294 -16 1925 112 16 48 chr11 61155365 61155678 -87627794 + AluSx SINE Alu 3 305 -7 505 294 47 18 chr11 61156393 61156563 -87626909 + MIR3 SINE MIR 2 176 -32 305 253 25 0 chr11 61159178 61159257 -87624215 - MER117 DNA MER1_type -35 162 82 419 277 164 17 chr11 61161089 61161266 -87622206 - MIR SINE MIR -23 239 37 279 319 29 51 chr11 61161491 61161629 -87621843 + L2 LINE L2 3179 3313 0 324 284 188 23 chr11 61163385 61163561 -87619911 - MER63A DNA MER1_type -4 206 2 528 261 102 67 chr11 61163846 61164130 -87619342 + L2 LINE L2 2959 3252 -20 580 311 42 19 chr11 61164471 61164683 -87618789 + MIR SINE MIR 35 251 -11 290 333 0 0 chr11 61165295 61165379 -87618093 + (CTGGGG)n Simple_repeat Simple_repeat 3 86 0 262 213 25 25 chr11 61165728 61165808 -87617664 + GA-rich Low_complexity Low_complexity 2 81 0 205 205 12 60 chr11 61169075 61169158 -87614314 + C-rich Low_complexity Low_complexity 2 80 0 350 291 58 41 chr11 61169525 61169697 -87613775 - MIR3 SINE MIR -33 175 1 189 94 0 0 chr11 61170882 61170914 -87612558 + (CA)n Simple_repeat Simple_repeat 1 32 0 219 69 0 0 chr11 61172034 61172063 -87611409 + (CA)n Simple_repeat Simple_repeat 2 30 0 2094 106 23 13 chr11 61172072 61172375 -87611097 - AluSx SINE Alu -6 306 1 2151 81 57 0 chr11 61173330 61173613 -87609859 + AluSg SINE Alu 1 299 -11 190 279 49 0 chr11 61174491 61174552 -87608920 + MIR SINE MIR 30 93 -115 215 285 275 24 chr11 61175222 61175429 -87608043 + L2 LINE L2 3014 3272 0 285 259 30 0 chr11 61175578 61175653 -87607819 + MIR SINE MIR 77 146 -62 545 209 116 0 chr11 61175957 61176086 -87607386 - MIR SINE MIR 0 262 119 323 151 164 0 chr11 61176758 61176831 -87606641 + MIR SINE MIR 79 163 -99 424 345 59 5 chr11 61177332 61177535 -87605937 - MIR SINE MIR -16 246 33 381 200 75 42 chr11 61177663 61177783 -87605689 + MIR SINE MIR 20 143 -65 324 281 31 13 chr11 61178270 61178296 -87605176 + MIR SINE MIR 13 37 -171 1921 89 8 4 chr11 61178296 61178554 -87604918 - L1PA8 LINE L1 0 6172 5914 324 281 31 13 chr11 61178554 61178638 -87604834 + MIR SINE MIR 37 128 -80 2155 159 27 8 chr11 61179382 61179752 -87603720 + L1MB3 LINE L1 5806 6182 -1 2000 147 0 0 chr11 61179754 61180061 -87603411 + AluSx SINE Alu 1 307 -5 1665 176 4 4 chr11 61180074 61180352 -87603120 + AluJo SINE Alu 12 289 -23 2015 131 6 16 chr11 61180370 61180683 -87602789 + AluJb SINE Alu 1 310 -2 207 266 13 25 chr11 61181462 61181541 -87601931 + CT-rich Low_complexity Low_complexity 6 83 0 787 147 0 37 chr11 61181616 61181752 -87601720 - FLAM_C SINE Alu -2 131 1 901 126 9 2 chr11 61181781 61182025 -87601447 + AluSx SINE Alu 2 293 -17 212 276 17 26 chr11 61182502 61182618 -87600854 + (TCTG)n Simple_repeat Simple_repeat 1 115 0 234 207 0 0 chr11 61183555 61183613 -87599859 + (TGAA)n Simple_repeat Simple_repeat 3 60 0 258 253 46 23 chr11 61183736 61183823 -87599649 + MIR3 SINE MIR 81 169 -39 709 153 147 41 chr11 61187130 61187248 -87596224 - LTR47A LTR ERVL -4 448 305 2129 95 6 60 chr11 61187248 61187564 -87595908 + AluSx SINE Alu 1 299 -13 709 153 147 41 chr11 61187564 61187615 -87595857 - LTR47A LTR ERVL -147 305 261 384 302 29 50 chr11 61187818 61188096 -87595376 - L2 LINE L2 -94 3219 2948 299 279 123 28 chr11 61188152 61188331 -87595141 - L2 LINE L2 -582 2732 2537 223 280 103 47 chr11 61191099 61191206 -87592266 + MIR3 SINE MIR 77 189 -19 25 31 0 0 chr11 61193345 61193377 -87590095 + GC_rich Low_complexity Low_complexity 1 32 0 1878 147 204 25 chr11 61193675 61194082 -87589390 + LTR12 LTR ERV1 1 480 -234 662 136 0 0 chr11 61194322 61194425 -87589047 - LTR12 LTR ERV1 0 714 612 349 235 20 0 chr11 61194425 61194523 -87588949 - LTR30 LTR ERV1 -80 642 543 2626 23 7 13 chr11 61194550 61194853 -87588619 - AluY SINE Alu -10 301 1 847 103 0 90 chr11 61194858 61195013 -87588459 - LTR12 LTR ERV1 -447 267 127 225 269 0 0 chr11 61195019 61195071 -87588401 - LTR30 LTR ERV1 -670 52 1 398 204 30 12 chr11 61195592 61195693 -87587779 - MIR SINE MIR -68 140 33 867 120 64 0 chr11 61196524 61196649 -87586823 + AluSq/x SINE Alu 1 133 -180 1995 114 25 0 chr11 61196649 61196929 -87586543 + AluSq SINE Alu 1 287 -26 2245 95 7 10 chr11 61196931 61197226 -87586246 + AluSq SINE Alu 1 294 -19 371 260 10 10 chr11 61197240 61197340 -87586132 - MIR SINE MIR -73 135 36 842 150 20 7 chr11 61199033 61199186 -87584286 + FRAM SINE Alu 4 158 -8 507 280 185 41 chr11 61199286 61199791 -87583681 - L2 LINE L2 -256 3057 2480 2331 105 0 0 chr11 61200187 61200483 -87582989 - AluY SINE Alu -15 296 1 502 266 68 5 chr11 61201012 61201219 -87582253 - L1ME LINE L1 -331 5790 5571 459 306 100 6 chr11 61201486 61201666 -87581806 + MIR3 SINE MIR 3 199 -9 1968 135 3 26 chr11 61201727 61202031 -87581441 - AluJb SINE Alu -15 297 1 2005 86 119 25 chr11 61202294 61202465 -87581007 + L1MA3 LINE L1 5910 6064 -241 2411 55 3 52 chr11 61202465 61202774 -87580698 - AluY SINE Alu -17 294 1 2005 86 119 25 chr11 61202774 61202964 -87580508 + L1MA3 LINE L1 6064 6305 0 1848 146 3 20 chr11 61203047 61203349 -87580123 + AluSx SINE Alu 1 297 -15 609 186 11 27 chr11 61203349 61203532 -87579940 + GA-rich Low_complexity Low_complexity 1 180 0 268 189 63 32 chr11 61203704 61203797 -87579675 - MLT1H LTR MaLR -4 622 460 206 128 26 0 chr11 61203834 61203873 -87579599 + CT-rich Low_complexity Low_complexity 1 40 0 1533 214 3 34 chr11 61203881 61204203 -87579269 - AluJb SINE Alu 0 312 1 243 227 0 80 chr11 61204332 61204420 -87579052 - MLT1H LTR MaLR -355 194 114 2044 128 47 0 chr11 61205293 61205590 -87577882 + AluSx SINE Alu 1 311 -1 1915 268 88 94 chr11 61205627 61205967 -87577505 - L1MC4a LINE L1 -784 7024 6683 239 88 368 0 chr11 61205967 61206024 -87577448 - MADE1 DNA Mariner 0 80 3 1915 268 88 94 chr11 61206024 61206208 -87577264 - L1MC4a LINE L1 -1125 6683 6499 2489 60 0 17 chr11 61206208 61206509 -87576963 - AluY SINE Alu -15 296 1 1915 268 88 94 chr11 61206509 61206966 -87576506 - L1MC4a LINE L1 -1309 6499 6041 1586 163 35 49 chr11 61206966 61207280 -87576192 + AluJo SINE Alu 1 310 0 1915 268 88 94 chr11 61207280 61207364 -87576108 - L1MC4a LINE L1 -1767 6041 5958 2200 108 3 7 chr11 61207364 61207661 -87575811 - AluSc SINE Alu -13 296 1 1915 268 88 94 chr11 61207661 61208317 -87575155 - L1MC4a LINE L1 -1850 5958 5254 409 274 47 113 chr11 61208318 61208592 -87574880 - L1MC4a LINE L1 -894 5252 4997 2210 108 0 0 chr11 61208593 61208872 -87574600 + AluSx SINE Alu 2 280 -32 225 0 0 0 chr11 61208874 61208899 -87574573 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 2281 91 0 3 chr11 61209019 61209351 -87574121 - AluSg SINE Alu 0 331 1 2438 89 0 0 chr11 61209355 61209648 -87573824 - AluSx SINE Alu -15 297 5 30 45 0 0 chr11 61210265 61210309 -87573163 + AT_rich Low_complexity Low_complexity 1 44 0 2542 64 0 3 chr11 61210433 61210730 -87572742 + AluY SINE Alu 1 296 -15 340 145 157 12 chr11 61210833 61210916 -87572556 + LTR8 LTR ERV1 441 535 -156 2493 66 7 3 chr11 61210917 61211220 -87572252 + AluSp SINE Alu 1 304 -9 498 190 0 0 chr11 61211249 61211328 -87572144 - AluS SINE Alu -233 80 2 1745 153 3 17 chr11 61211354 61211642 -87571830 - AluJb SINE Alu -28 284 1 454 200 11 22 chr11 61211754 61211844 -87571628 - MER21B LTR ERV1 -774 89 1 2255 81 7 32 chr11 61211991 61212335 -87571137 - AluSp SINE Alu 0 313 1 326 279 98 16 chr11 61212397 61212519 -87570953 + MIR3 SINE MIR 70 201 -7 375 269 21 0 chr11 61212545 61212638 -87570834 + MIR SINE MIR 56 150 -112 2434 68 7 3 chr11 61212639 61212935 -87570537 + AluSp SINE Alu 2 298 -15 225 174 0 0 chr11 61212938 61212984 -87570488 + L1MB3 LINE L1 6138 6183 0 2417 91 3 0 chr11 61213000 61213298 -87570174 + AluSx SINE Alu 1 299 -13 805 143 8 8 chr11 61213356 61213489 -87569983 + MER4B LTR ERV1 1 133 -477 730 163 7 64 chr11 61213502 61213643 -87569829 + MER4E LTR ERV1 354 486 -293 2102 103 18 0 chr11 61213643 61213957 -87569515 - AluSx SINE Alu 0 319 1 1222 145 16 73 chr11 61213958 61214206 -87569266 - LTR45 LTR ERV1 -291 234 1 956 139 52 217 chr11 61214830 61215209 -87568263 + MER51C LTR ERV1 329 640 0 513 144 33 178 chr11 61215399 61215472 -87568000 - MER5B DNA MER1_type -8 170 137 2074 156 0 0 chr11 61215472 61215779 -87567693 - AluSx SINE Alu -4 308 2 513 144 33 178 chr11 61215779 61215885 -87567587 - MER5B DNA MER1_type -41 137 17 196 274 157 29 chr11 61216763 61216865 -87566607 - L2 LINE L2 -1 3312 3198 1262 138 102 121 chr11 61217017 61217322 -87566150 + AluSx SINE Alu 1 299 -13 2207 128 3 3 chr11 61217326 61217638 -87565834 + AluSq SINE Alu 1 312 -1 1246 134 0 0 chr11 61217638 61217809 -87565663 + AluSg/x SINE Alu 118 288 -22 4283 95 65 0 chr11 61218061 61218705 -87564767 - L1PA11 LINE L1 -1 6173 5488 3353 193 99 26 chr11 61218939 61219743 -87563729 - MER21B LTR ERV1 0 863 1 213 39 0 0 chr11 61219812 61219838 -87563634 + (TG)n Simple_repeat Simple_repeat 2 27 0 347 291 74 42 chr11 61219961 61220129 -87563343 - L1M3 LINE L1 -638 5542 5381 1975 90 11 14 chr11 61220129 61220407 -87563065 - AluY SINE Alu -11 300 24 347 291 74 42 chr11 61220407 61220696 -87562776 - L1M3 LINE L1 -799 5381 5052 2263 122 3 0 chr11 61221240 61221543 -87561929 - AluSq SINE Alu -9 304 1 751 263 110 4 chr11 61221566 61221802 -87561670 - MIR SINE MIR -1 261 1 2279 125 0 0 chr11 61221853 61222148 -87561324 + AluSx SINE Alu 4 298 -14 2245 85 67 0 chr11 61222857 61223140 -87560332 - AluSx SINE Alu -10 302 1 1143 65 0 182 chr11 61223570 61223784 -87559688 + AluSp SINE Alu 135 309 -4 1765 172 0 10 chr11 61224114 61224405 -87559067 + AluJo SINE Alu 23 310 -2 1008 160 41 0 chr11 61224407 61224576 -87558896 + LTR47A LTR ERVL 277 452 0 7768 60 5 7 chr11 61224651 61225660 -87557812 - LTR13 LTR ERVK 0 1007 1 1462 158 132 7 chr11 61225684 61225957 -87557515 - AluJo SINE Alu -5 307 1 762 135 40 16 chr11 61226116 61226242 -87557230 - MER4B-int LTR ERV1 -3345 3413 3285 2318 97 3 0 chr11 61226258 61226558 -87556914 - AluSp SINE Alu -12 301 1 788 159 26 2 chr11 61226572 61226733 -87556739 + MER49 LTR ERV1 1 168 -442 1245 123 15 116 chr11 61226733 61227001 -87556471 + MER21-int LTR ERV1 418 658 -3533 747 104 149 0 chr11 61227001 61227135 -87556337 - MER41A LTR ERV1 0 554 401 2625 71 0 0 chr11 61227248 61227559 -87555913 - AluY SINE Alu 0 311 1 2093 96 32 11 chr11 61227607 61227888 -87555584 - AluSg SINE Alu -19 291 5 18064 134 27 32 chr11 61227957 61227976 -87555496 - L1PA10 LINE L1 -2 6166 6148 180 0 0 0 chr11 61227976 61227996 -87555476 + (TTTAA)n Simple_repeat Simple_repeat 3 22 0 18064 134 27 32 chr11 61227996 61230872 -87552600 - L1PA10 LINE L1 -20 6148 3312 2426 89 3 0 chr11 61230872 61231176 -87552296 - AluSc SINE Alu -4 305 1 18064 134 27 32 chr11 61231176 61233551 -87549921 - L1PA10 LINE L1 -2856 3312 926 3902 178 15 8 chr11 61233590 61233700 -87549772 + L1MB1 LINE L1 5376 5484 -684 2196 88 3 70 chr11 61233700 61234029 -87549443 + AluSq SINE Alu 1 307 -6 3902 178 15 8 chr11 61234029 61234670 -87548802 + L1MB1 LINE L1 5484 6132 -36 2050 138 3 22 chr11 61234674 61234804 -87548668 + AluJb SINE Alu 6 137 -175 2029 80 102 0 chr11 61234804 61235078 -87548394 + AluSp SINE Alu 1 302 -11 2050 138 3 22 chr11 61235078 61235258 -87548214 + AluJb SINE Alu 137 310 -2 508 256 23 8 chr11 61235704 61235833 -87547639 - MIR SINE MIR -112 150 20 265 270 71 32 chr11 61235874 61236000 -87547472 - ORSL DNA AcHobo -3 272 142 281 100 0 0 chr11 61236059 61236099 -87547373 + LTR36 LTR ERV1 1 40 -571 2286 109 3 0 chr11 61236101 61236402 -87547070 + AluSq SINE Alu 1 302 -11 2405 85 10 0 chr11 61236402 61236708 -87546764 + AluYa5 SINE Alu 1 309 -2 1740 134 0 17 chr11 61236729 61237021 -87546451 + LTR36 LTR ERV1 26 312 -299 2963 181 9 28 chr11 61237313 61237961 -87545511 - L1MB1 LINE L1 -39 6129 5494 2255 98 3 29 chr11 61237966 61238281 -87545191 - AluSq SINE Alu -6 307 1 180 370 39 59 chr11 61238418 61238621 -87544851 + L2 LINE L2 3066 3264 -8 1235 71 0 116 chr11 61238711 61238909 -87544563 + AluSp SINE Alu 135 309 -4 1733 175 0 10 chr11 61239239 61239530 -87543942 + AluJo SINE Alu 23 310 -2 976 166 41 0 chr11 61239532 61239701 -87543771 + LTR47A LTR ERVL 277 452 0 8192 60 5 8 chr11 61239776 61240786 -87542686 - LTR13 LTR ERVK 0 1007 1 1388 153 153 8 chr11 61240810 61241078 -87542394 - AluJo SINE Alu -5 307 1 756 135 40 16 chr11 61241237 61241363 -87542109 - MER4B-int LTR ERV1 -3345 3413 3285 2303 97 3 0 chr11 61241379 61241679 -87541793 - AluSp SINE Alu -12 301 1 770 159 26 2 chr11 61241693 61241854 -87541618 + MER49 LTR ERV1 1 168 -442 1238 123 15 116 chr11 61241854 61242122 -87541350 + MER21-int LTR ERV1 418 658 -3533 3105 132 65 47 chr11 61242122 61242296 -87541176 - MER41B LTR ERV1 0 635 466 2089 100 4 0 chr11 61242296 61242567 -87540905 - AluY SINE Alu -39 272 1 3105 132 65 47 chr11 61242567 61243006 -87540466 - MER41B LTR ERV1 -169 466 11 989 141 118 18 chr11 61243007 61243177 -87540295 - AluJo SINE Alu -125 187 1 228 206 15 59 chr11 61243925 61243993 -87539479 - MIR SINE MIR -117 91 27 2171 142 0 0 chr11 61245382 61245684 -87537788 + AluSx SINE Alu 1 302 -10 356 187 55 22 chr11 61245713 61245804 -87537668 - MLT1L LTR MaLR -207 408 315 1107 152 0 27 chr11 61246280 61246296 -87537176 - AluJo/FRAM SINE Alu 0 312 297 2248 96 16 19 chr11 61246296 61246640 -87536832 - AluSq SINE Alu 0 313 1 1107 152 0 27 chr11 61246640 61246807 -87536665 - AluJo/FRAM SINE Alu -15 297 134 2559 72 0 0 chr11 61246807 61247111 -87536361 - AluY SINE Alu -7 304 1 2242 98 17 3 chr11 61247118 61247413 -87536059 - AluSq SINE Alu -14 299 1 1796 156 10 42 chr11 61247416 61247580 -87535892 - AluJo SINE Alu -15 297 129 2550 73 0 0 chr11 61247580 61247883 -87535589 - AluY SINE Alu -8 303 1 2364 90 0 7 chr11 61247890 61248190 -87535282 - AluSq SINE Alu -15 298 1 1796 156 10 42 chr11 61248190 61248324 -87535148 - AluJo SINE Alu -189 123 1 3148 171 68 27 chr11 61248324 61248801 -87534671 - L1MB5 LINE L1 -238 5936 5480 2281 105 17 0 chr11 61248801 61249096 -87534376 - AluSc SINE Alu -9 300 1 3148 171 68 27 chr11 61249096 61249643 -87533829 - L1MB5 LINE L1 -694 5480 4871 2166 119 7 0 chr11 61249643 61249937 -87533535 - AluSx SINE Alu -16 296 1 3148 171 68 27 chr11 61249937 61250019 -87533453 - L1MB5 LINE L1 -1303 4871 4794 936 206 6 0 chr11 61250183 61250343 -87533129 - AluJb SINE Alu -15 297 137 2155 112 3 14 chr11 61250381 61250539 -87532933 - AluSx SINE Alu -20 292 137 2330 95 0 0 chr11 61250539 61250834 -87532638 - AluY SINE Alu -16 295 1 2155 112 3 14 chr11 61250834 61250970 -87532502 - AluSx SINE Alu -175 137 1 2318 96 0 10 chr11 61251745 61252047 -87531425 - AluSc SINE Alu -10 299 1 2418 67 0 10 chr11 61252529 61252828 -87530644 + AluSg1 SINE Alu 1 296 -13 2390 81 3 0 chr11 61252838 61253136 -87530336 + AluSq SINE Alu 1 299 -14 2147 98 0 4 chr11 61253136 61253413 -87530059 + AluSq SINE Alu 1 276 -37 227 31 31 0 chr11 61253418 61253450 -87530022 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 646 329 76 22 chr11 61253895 61254263 -87529209 - L2 LINE L2 0 3313 2926 2227 123 0 0 chr11 61254417 61254709 -87528763 + AluSx SINE Alu 1 292 -20 1090 121 0 0 chr11 61256522 61256698 -87526774 - AluY SINE Alu 0 308 133 2141 106 46 0 chr11 61256698 61256982 -87526490 - AluSg SINE Alu -13 297 1 1620 171 23 27 chr11 61256984 61257283 -87526189 - AluJo SINE Alu -14 298 1 762 103 73 7 chr11 61257289 61257425 -87526047 - L1MA5A LINE L1 0 6297 6153 3621 105 34 15 chr11 61257426 61258017 -87525455 - LTR10E LTR ERV1 -31 602 1 1210 143 0 0 chr11 61258037 61258212 -87525260 - AluSg/x SINE Alu -1 311 137 967 160 69 11 chr11 61258586 61258706 -87524766 + AluJo SINE Alu 2 137 -175 254 96 0 19 chr11 61258706 61258758 -87524714 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 967 160 69 11 chr11 61258758 61258812 -87524660 + AluJo SINE Alu 137 186 -126 331 327 55 20 chr11 61258947 61259146 -87524326 - L2 LINE L2 -438 2876 2671 2371 97 3 6 chr11 61259284 61259595 -87523877 - AluSg SINE Alu 0 310 1 1054 130 40 6 chr11 61259697 61259874 -87523598 + LTR26B LTR ERV1 1 183 -348 2033 92 19 4 chr11 61259874 61260162 -87523310 - AluSq SINE Alu 0 309 18 1675 164 21 0 chr11 61260164 61260450 -87523022 + LTR26B LTR ERV1 232 523 -8 934 74 167 49 chr11 61260450 61260515 -87522957 + LTR9 LTR ERV1 3 59 -553 2371 117 0 0 chr11 61260515 61260824 -87522648 - AluSc SINE Alu 0 309 1 934 74 167 49 chr11 61260824 61260920 -87522552 + LTR9 LTR ERV1 59 183 -429 3404 111 59 0 chr11 61260920 61261425 -87522047 + LTR8 LTR ERV1 1 535 -156 2397 84 7 3 chr11 61261426 61261736 -87521736 + AluSp SINE Alu 1 311 -2 2482 145 24 29 chr11 61261761 61262217 -87521255 + LTR36 LTR ERV1 26 479 -132 2226 106 7 0 chr11 61262217 61262510 -87520962 - AluSx SINE Alu -17 295 1 2269 101 6 22 chr11 61262523 61262841 -87520631 - AluSp SINE Alu 0 313 1 715 93 0 0 chr11 61262841 61262938 -87520534 - MER4E LTR ERV1 -16 750 654 1612 157 115 15 chr11 61262938 61263347 -87520125 - LTR7 LTR ERV1 0 450 1 * 4482 69 26 29 chr11 61263347 61264013 -87519459 - MER4E LTR ERV1 -102 664 1 2079 119 0 53 chr11 61264979 61265299 -87518173 + AluSx SINE Alu 6 308 -4 343 173 0 40 chr11 61265739 61265814 -87517658 - FLAM_A SINE Alu -16 117 46 2369 170 16 44 chr11 61265814 61266349 -87517123 - MER41B LTR ERV1 -12 597 111 2014 122 40 44 chr11 61266413 61266509 -87516963 - THE1C LTR MaLR 0 428 333 1886 122 0 8 chr11 61266509 61266771 -87516701 - AluSx SINE Alu -11 301 42 2014 122 40 44 chr11 61266771 61267102 -87516370 - THE1C LTR MaLR -95 333 1 1932 244 51 52 chr11 61267102 61267695 -87515777 + MER21B LTR ERV1 157 750 -113 4441 164 54 34 chr11 61267695 61268580 -87514892 - MER4D LTR ERV1 0 903 1 1932 244 51 52 chr11 61268580 61268637 -87514835 + MER21B LTR ERV1 750 806 -57 1942 123 17 23 chr11 61268748 61269049 -87514423 + AluSq SINE Alu 1 299 -14 1572 186 25 11 chr11 61269054 61269339 -87514133 + AluJo SINE Alu 1 289 -23 180 200 0 0 chr11 61269933 61269973 -87513499 + GA-rich Low_complexity Low_complexity 2 41 0 2222 132 3 0 chr11 61270098 61270402 -87513070 + AluSx SINE Alu 1 305 -7 1060 194 53 79 chr11 61270688 61270788 -87512684 - LTR56 LTR ERV1 -1 444 343 2212 117 7 0 chr11 61270788 61271130 -87512342 - AluSg SINE Alu 0 310 1 1060 194 53 79 chr11 61271130 61271384 -87512088 - LTR56 LTR ERV1 -102 343 99 1688 119 0 25 chr11 61271388 61271631 -87511841 + AluSg SINE Alu 30 266 -44 255 31 0 0 chr11 61271637 61271669 -87511803 + AluSg SINE Alu 244 275 -27 619 187 0 0 chr11 61271669 61271776 -87511696 - AluSg/x SINE Alu -69 243 137 2043 131 10 13 chr11 61272045 61272358 -87511114 - AluSx SINE Alu 0 312 1 1828 164 0 16 chr11 61272617 61272927 -87510545 + AluJb SINE Alu 1 305 -7 2165 123 3 3 chr11 61273367 61273667 -87509805 + AluSq SINE Alu 1 300 -13 2020 123 3 10 chr11 61273751 61274044 -87509428 - AluSc SINE Alu -6 303 13 4482 69 26 29 chr11 61274350 61275016 -87508456 + MER4E LTR ERV1 1 664 -102 1612 157 115 15 chr11 61275016 61275425 -87508047 + LTR7 LTR ERV1 1 450 0 715 93 0 0 chr11 61275425 61275522 -87507950 + MER4E LTR ERV1 654 750 -16 2415 81 3 0 chr11 61275522 61275820 -87507652 + AluSx SINE Alu 1 299 -13 453 235 151 30 chr11 61276180 61276346 -87507126 - MER5C DNA MER1_type 0 324 139 2599 96 30 37 chr11 61276346 61276692 -87506780 - MER4A LTR ERV1 0 664 319 2203 90 4 0 chr11 61276692 61277016 -87506456 + AluSp SINE Alu 6 330 0 2599 96 30 37 chr11 61277016 61277075 -87506397 - MER4A LTR ERV1 -345 319 261 631 101 10 20 chr11 61277075 61277174 -87506298 - MER4A LTR ERV1 -566 98 1 579 213 21 21 chr11 61277174 61277315 -87506157 - MER5C DNA MER1_type -182 142 2 22 0 0 0 chr11 61277365 61277387 -87506085 + AT_rich Low_complexity Low_complexity 1 22 0 2235 105 3 3 chr11 61278089 61278384 -87505088 + AluSx SINE Alu 1 295 -17 445 293 88 32 chr11 61278666 61278748 -87504724 + L2 LINE L2 2610 2686 -628 2050 108 0 44 chr11 61278748 61278938 -87504534 - AluSx SINE Alu 0 313 140 261 0 0 0 chr11 61278938 61278967 -87504505 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2050 108 0 44 chr11 61278967 61279102 -87504370 - AluSx SINE Alu -173 140 1 445 293 88 32 chr11 61279102 61279267 -87504205 + L2 LINE L2 2686 2872 -442 740 209 8 107 chr11 61279531 61279641 -87503831 + MER58C DNA MER1_type 1 120 -2300 222 37 0 0 chr11 61279641 61279668 -87503804 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2430 80 0 13 chr11 61279670 61279969 -87503503 - AluSq SINE Alu -18 295 1 740 209 8 107 chr11 61279969 61280005 -87503467 + MER58C DNA MER1_type 121 159 -2261 676 152 96 32 chr11 61280005 61280130 -87503342 + FLAM_C SINE Alu 1 133 0 740 209 8 107 chr11 61280130 61280213 -87503259 + MER58C DNA MER1_type 159 211 -4 2179 117 7 0 chr11 61280261 61280561 -87502911 + AluSq SINE Alu 2 303 -10 526 249 53 10 chr11 61280562 61280771 -87502701 + L1ME3A LINE L1 5730 5947 -223 6257 130 21 19 chr11 61280772 61281649 -87501823 + L1 LINE L1 4125 5006 -1140 2323 112 0 0 chr11 61281649 61281945 -87501527 + AluSx SINE Alu 1 296 -16 6257 130 21 19 chr11 61281945 61282223 -87501249 + L1 LINE L1 5006 5282 -864 2129 123 7 13 chr11 61282223 61282532 -87500940 + AluSg SINE Alu 1 307 -3 2048 113 7 7 chr11 61282729 61283020 -87500452 - AluSx SINE Alu -21 291 1 2231 106 10 0 chr11 61283622 61283923 -87499549 + AluSx SINE Alu 1 304 -8 897 244 83 20 chr11 61284569 61284624 -87498848 + MLT1C LTR MaLR 198 248 -219 2194 97 10 17 chr11 61284624 61284924 -87498548 + AluSq SINE Alu 1 298 -15 897 244 83 20 chr11 61284924 61285122 -87498350 + MLT1C LTR MaLR 248 467 0 190 267 33 67 chr11 61285219 61285309 -87498163 - L3 LINE CR1 -11 1566 1480 240 163 0 0 chr11 61285854 61285903 -87497569 - MLT1C LTR MaLR -233 234 186 1827 163 7 3 chr11 61286135 61286429 -87497043 + AluJb SINE Alu 1 295 -17 2649 55 0 0 chr11 61286565 61286875 -87496597 - AluY SINE Alu 0 311 2 315 313 12 19 chr11 61287012 61287172 -87496300 + L1MEc LINE L1 22 180 -6216 753 117 36 0 chr11 61287173 61287284 -87496188 + AluSq SINE Alu 74 188 -125 2449 63 0 0 chr11 61287380 61287709 -87495763 - AluSx SINE Alu 0 329 1 498 33 0 0 chr11 61287709 61287769 -87495703 + (TTA)n Simple_repeat Simple_repeat 3 62 0 2245 87 0 7 chr11 61287770 61288058 -87495414 - AluSx SINE Alu -26 286 1 21 0 0 0 chr11 61288318 61288339 -87495133 + AT_rich Low_complexity Low_complexity 1 21 0 2377 83 3 19 chr11 61288788 61289102 -87494370 - AluSc SINE Alu 0 309 1 1926 129 21 0 chr11 61289105 61289392 -87494080 - AluSx SINE Alu -19 293 1 2171 149 89 56 chr11 61289415 61289930 -87493542 - Cheshire DNA MER1_type -2 2418 1887 578 171 48 0 chr11 61289935 61290040 -87493432 + MER66A LTR ERV1 6 115 -363 6106 76 13 16 chr11 61290040 61290792 -87492680 + L1PA12 LINE L1 5327 6078 -90 1600 127 97 86 chr11 61290792 61291163 -87492309 - THE1C LTR MaLR 0 375 1 6106 76 13 16 chr11 61291163 61291243 -87492229 + L1PA12 LINE L1 6078 6157 -11 1584 159 166 7 chr11 61291243 61291551 -87491921 + MER66B LTR ERV1 100 456 -30 4906 183 17 1 chr11 61291587 61292475 -87490997 - Cheshire DNA MER1_type -612 1808 907 1282 198 136 42 chr11 61292475 61292858 -87490614 - MLT1C LTR MaLR 0 467 49 511 92 0 0 chr11 61292918 61292983 -87490489 - Cheshire DNA MER1_type -1509 911 847 1049 166 28 62 chr11 61292983 61293194 -87490278 - AluJo SINE Alu -17 295 92 752 84 19 0 chr11 61293295 61293402 -87490070 - AluSq/x SINE Alu -202 110 2 1990 146 0 13 chr11 61293404 61293706 -87489766 - AluJo SINE Alu -14 298 1 2024 113 27 30 chr11 61293764 61294064 -87489408 + AluSx SINE Alu 1 299 -13 2242 94 3 0 chr11 61294267 61294564 -87488908 - AluSg SINE Alu -12 298 1 314 302 40 0 chr11 61294761 61294887 -87488585 - L1MC5 LINE L1 -519 7442 7312 396 205 134 39 chr11 61295162 61295289 -87488183 - MIR SINE MIR -41 221 83 2085 126 3 0 chr11 61295309 61295595 -87487877 + AluSx SINE Alu 1 287 -25 371 303 119 16 chr11 61296000 61296185 -87487287 + MIR SINE MIR 45 248 -14 1606 143 129 91 chr11 61296255 61296328 -87487144 - MLT1A1 LTR MaLR -2 363 294 1574 179 0 47 chr11 61296328 61296624 -87486848 + AluJo SINE Alu 1 282 -30 180 0 0 0 chr11 61296624 61296644 -87486828 + (TA)n Simple_repeat Simple_repeat 2 21 0 1606 143 129 91 chr11 61296644 61296919 -87486553 - MLT1A1 LTR MaLR -70 295 1 2364 185 9 23 chr11 61297047 61297484 -87485988 + LTR3 LTR ERVK 1 431 -1 20093 114 13 7 chr11 61297492 61300383 -87483089 + HERVK3 LTR ERVK 2 2910 -4333 1121 66 0 0 chr11 61300370 61300507 -87482965 + HERVK3 LTR ERVK 4119 4255 -2988 * 330 45 0 0 chr11 61300514 61300558 -87482914 + (TA)n Simple_repeat Simple_repeat 1 44 0 189 0 0 0 chr11 61300557 61300578 -87482894 + (CA)n Simple_repeat Simple_repeat 2 22 0 * 18779 106 5 2 chr11 61300580 61303177 -87480295 + HERVK3 LTR ERVK 4636 7241 -2 2524 170 7 16 chr11 61303179 61303615 -87479857 + LTR3 LTR ERVK 1 432 0 1875 106 38 8 chr11 61303734 61303998 -87479474 + AluSx SINE Alu 2 273 -39 249 297 0 0 chr11 61304025 61304099 -87479373 + CT-rich Low_complexity Low_complexity 4 77 0 218 313 157 0 chr11 61304305 61304420 -87479052 + MIR SINE MIR 109 241 -21 1987 124 0 51 chr11 61304454 61304768 -87478704 + AluSg SINE Alu 1 298 -12 271 244 12 23 chr11 61305615 61305701 -87477771 - L1MC5 LINE L1 -45 7916 7832 2007 130 3 3 chr11 61306623 61306908 -87476564 + AluSq SINE Alu 1 285 -28 365 235 151 30 chr11 61307283 61307449 -87476023 - MER5C DNA MER1_type 0 324 139 2740 96 30 37 chr11 61307449 61307795 -87475677 - MER4A LTR ERV1 0 664 319 2178 90 4 0 chr11 61307795 61308119 -87475353 + AluSp SINE Alu 6 330 0 2740 96 30 37 chr11 61308119 61308178 -87475294 - MER4A LTR ERV1 -345 319 261 669 101 10 20 chr11 61308178 61308277 -87475195 - MER4A LTR ERV1 -566 98 1 506 213 21 21 chr11 61308277 61308418 -87475054 - MER5C DNA MER1_type -182 142 2 22 0 0 0 chr11 61308468 61308490 -87474982 + AT_rich Low_complexity Low_complexity 1 22 0 2218 105 3 3 chr11 61309193 61309488 -87473984 + AluSx SINE Alu 1 295 -17 348 297 88 32 chr11 61309770 61309852 -87473620 + L2 LINE L2 2610 2686 -628 2022 107 0 53 chr11 61309852 61310045 -87473427 - AluSx SINE Alu 0 313 142 180 0 0 0 chr11 61310045 61310065 -87473407 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2022 107 0 53 chr11 61310065 61310200 -87473272 - AluSx SINE Alu -171 142 1 348 297 88 32 chr11 61310200 61310365 -87473107 + L2 LINE L2 2686 2872 -442 820 205 8 107 chr11 61310629 61310739 -87472733 + MER58C DNA MER1_type 1 120 -2300 258 32 0 0 chr11 61310739 61310770 -87472702 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2465 70 0 13 chr11 61310772 61311071 -87472401 - AluSq SINE Alu -18 295 1 820 205 8 107 chr11 61311071 61311107 -87472365 + MER58C DNA MER1_type 121 159 -2261 670 144 96 32 chr11 61311107 61311232 -87472240 + FLAM_C SINE Alu 1 133 0 820 205 8 107 chr11 61311232 61311315 -87472157 + MER58C DNA MER1_type 159 211 -4 2321 92 7 0 chr11 61311363 61311657 -87471815 + AluSq SINE Alu 2 297 -16 620 241 51 14 chr11 61311657 61311873 -87471599 + L1ME3A LINE L1 5724 5947 -223 2121 219 36 5 chr11 61311874 61312430 -87471042 + L1 LINE L1 4125 4697 -1449 297 194 28 0 chr11 61312567 61312639 -87470833 - L1ME1 LINE L1 -293 5873 5800 1014 257 0 0 chr11 61312640 61312862 -87470610 - MLT1A1 LTR MaLR 0 365 144 342 159 13 21 chr11 61312950 61313027 -87470445 - AluJ/FRAM SINE Alu -21 281 216 * 417 184 23 0 chr11 61313012 61313099 -87470373 - MLT1A1 LTR MaLR -203 162 74 1305 106 0 0 chr11 61313099 61313269 -87470203 - AluSp SINE Alu -10 303 134 2332 99 13 0 chr11 61313269 61313572 -87469900 - AluSq SINE Alu -6 307 1 2099 99 43 0 chr11 61313618 61313900 -87469572 - AluSx SINE Alu -18 294 1 809 160 153 0 chr11 61313905 61314055 -87469417 + MER46A DNA MER2_type 55 227 -9 329 118 20 0 chr11 61314056 61314107 -87469365 - MLT1A1 LTR MaLR -313 52 1 2011 205 16 3 chr11 61314107 61314492 -87468980 - L1ME1 LINE L1 -363 5803 5414 2333 110 0 3 chr11 61314557 61314866 -87468606 - AluSq SINE Alu -5 308 1 1415 252 39 37 chr11 61314895 61315280 -87468192 + HAL1 LINE L1 1524 1907 -600 1470 174 16 59 chr11 61315280 61315454 -87468018 - AluJb SINE Alu -12 300 120 342 0 0 0 chr11 61315454 61315492 -87467980 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 2102 104 4 4 chr11 61315492 61315770 -87467702 - AluSc SINE Alu -30 279 2 1470 174 16 59 chr11 61315770 61315899 -87467573 - AluJb SINE Alu -190 122 9 1415 252 39 37 chr11 61315899 61316057 -87467415 + HAL1 LINE L1 1907 2068 -439 380 294 180 12 chr11 61316060 61316305 -87467167 + HAL1 LINE L1 2222 2507 0 282 232 30 10 chr11 61316323 61316422 -87467050 + L1ME4a LINE L1 5835 5935 -186 1910 154 0 3 chr11 61316488 61316773 -87466699 - AluJo SINE Alu -23 289 6 22 99 0 0 chr11 61316789 61316860 -87466612 + AT_rich Low_complexity Low_complexity 1 71 0 397 231 0 0 chr11 61316887 61316965 -87466507 - FLAM SINE Alu -12 121 44 234 298 67 45 chr11 61318087 61318156 -87465316 - L1ME3A LINE L1 -208 5962 5896 2124 140 0 3 chr11 61318156 61318464 -87465008 - AluSx SINE Alu -5 307 1 234 298 67 45 chr11 61318464 61318572 -87464900 - L1ME3A LINE L1 -274 5896 5781 210 208 0 0 chr11 61318575 61318623 -87464849 + (TA)n Simple_repeat Simple_repeat 1 48 0 1667 105 112 4 chr11 61318623 61318890 -87464582 - AluSq SINE Alu -15 298 3 21 36 0 0 chr11 61318892 61318920 -87464552 + AT_rich Low_complexity Low_complexity 1 28 0 752 140 18 0 chr11 61318926 61319040 -87464432 - FLAM_C SINE Alu -25 118 3 23 33 0 0 chr11 61319082 61319112 -87464360 + AT_rich Low_complexity Low_complexity 1 30 0 397 244 18 83 chr11 61319211 61319379 -87464093 + MER5B DNA MER1_type 18 174 -4 2163 107 4 0 chr11 61319481 61319790 -87463682 + AluSq SINE Alu 1 310 0 747 134 6 116 chr11 61319976 61320148 -87463324 + MER21A LTR ERV1 13 165 -766 1152 167 45 0 chr11 61320175 61320373 -87463099 + MER39 LTR ERV1 267 473 -234 2334 85 0 0 chr11 61320378 61320710 -87462762 - AluSg SINE Alu 0 333 2 383 136 0 0 chr11 61321131 61321190 -87462282 - MLT1D LTR MaLR -5 500 442 853 159 8 0 chr11 61321190 61321322 -87462150 + FLAM_C SINE Alu 1 133 0 544 160 11 11 chr11 61321362 61321456 -87462016 - MLT1D LTR MaLR -59 446 353 785 172 0 15 chr11 61321474 61321608 -87461864 - FLAM_C SINE Alu -1 132 1 5664 135 60 58 chr11 61321609 61322093 -87461379 + LTR49-int LTR ERV1 717 1199 -5399 2245 113 3 3 chr11 61322093 61322402 -87461070 - AluSg SINE Alu -1 309 1 2272 121 0 3 chr11 61322402 61322707 -87460765 - AluSx SINE Alu -8 304 1 5664 135 60 58 chr11 61322707 61324312 -87459160 + LTR49-int LTR ERV1 1198 3681 -2917 * 12825 99 43 23 chr11 61324310 61325900 -87457572 + LTR49-int LTR ERV1 3836 5476 -1122 2301 96 0 13 chr11 61325900 61326201 -87457271 - AluSp SINE Alu -16 297 1 12825 99 43 23 chr11 61326201 61326642 -87456830 + LTR49-int LTR ERV1 5476 5907 -691 2164 124 10 0 chr11 61326642 61326940 -87456532 - AluSx SINE Alu -11 301 1 1918 161 3 0 chr11 61327087 61327386 -87456086 + AluSx SINE Alu 2 301 -11 914 191 45 124 chr11 61327386 61327852 -87455620 + LTR49-int LTR ERV1 3471 3899 -2432 1733 127 101 4 chr11 61327858 61328134 -87455338 + AluJb SINE Alu 1 303 -9 1851 131 7 11 chr11 61328145 61328427 -87455045 + AluSc SINE Alu 3 283 -26 1143 166 16 5 chr11 61328448 61328635 -87454837 - MER49 LTR ERV1 -734 189 1 1918 121 16 26 chr11 61328803 61329109 -87454363 + AluSq SINE Alu 1 303 -10 1486 185 23 33 chr11 61329116 61329418 -87454054 + AluJo SINE Alu 3 301 -11 180 200 0 0 chr11 61329984 61330024 -87453448 + GA-rich Low_complexity Low_complexity 2 41 0 2086 139 3 3 chr11 61330149 61330450 -87453022 + AluSx SINE Alu 1 301 -11 1043 175 43 62 chr11 61330713 61330856 -87452616 - LTR56 LTR ERV1 0 437 293 240 59 0 0 chr11 61330856 61330890 -87452582 + (TTGTG)n Simple_repeat Simple_repeat 4 37 0 2212 104 7 0 chr11 61330890 61331172 -87452300 - AluSg SINE Alu -26 284 1 1043 175 43 62 chr11 61331172 61331377 -87452095 - LTR56 LTR ERV1 -142 295 123 265 189 0 38 chr11 61331507 61331560 -87451912 - MER21A LTR ERV1 -880 51 1 2273 95 26 0 chr11 61331623 61331928 -87451544 - AluSp SINE Alu 0 313 1 984 190 130 84 chr11 61332606 61332675 -87450797 - MLT1C LTR MaLR 0 467 403 2315 88 0 0 chr11 61332675 61332986 -87450486 + AluSp SINE Alu 1 311 0 984 190 130 84 chr11 61332986 61333284 -87450188 - MLT1C LTR MaLR -64 403 82 2021 150 0 10 chr11 61333324 61333638 -87449834 + AluJb SINE Alu 1 311 -1 2343 104 0 3 chr11 61333642 61333949 -87449523 - AluSc SINE Alu -3 306 1 389 228 33 0 chr11 61333952 61334044 -87449428 - MLT1C LTR MaLR -372 95 1 852 241 211 25 chr11 61334198 61334592 -87448880 - MLT1C LTR MaLR 0 467 1 866 126 0 16 chr11 61334654 61334781 -87448691 - FLAM_C SINE Alu -8 125 1 1370 276 72 52 chr11 61334806 61334899 -87448573 - L2 LINE L2 -3 3310 3220 1859 138 80 7 chr11 61334899 61335188 -87448284 - AluSx SINE Alu 0 312 3 2039 147 0 19 chr11 61335192 61335505 -87447967 - AluSx SINE Alu -5 307 1 1370 276 72 52 chr11 61335505 61335957 -87447515 - L2 LINE L2 -95 3218 2776 228 67 0 0 chr11 61335957 61335987 -87447485 + (TTG)n Simple_repeat Simple_repeat 1 30 0 2262 80 4 0 chr11 61335987 61336261 -87447211 - AluSg SINE Alu -35 275 1 1370 276 72 52 chr11 61336261 61336559 -87446913 - L2 LINE L2 -536 2777 2447 771 147 0 0 chr11 61336593 61336722 -87446750 - L1MB3 LINE L1 -4 6179 6051 202 211 58 0 chr11 61337218 61337270 -87446202 + G-rich Low_complexity Low_complexity 3 57 0 424 36 0 279 chr11 61337512 61337565 -87445907 - MADE1 DNA Mariner 0 80 72 2323 107 3 3 chr11 61337565 61337863 -87445609 + AluSx SINE Alu 2 299 -13 424 36 0 279 chr11 61337863 61337920 -87445552 - MADE1 DNA Mariner -8 72 1 861 149 98 11 chr11 61337995 61338169 -87445303 - Tigger7 DNA MER2_type 0 2487 2299 967 128 0 0 chr11 61338170 61338303 -87445169 + FLAM_C SINE Alu 1 133 -10 2236 165 68 19 chr11 61338313 61338647 -87444825 - Tigger7 DNA MER2_type -179 2308 1992 2384 107 3 0 chr11 61338647 61338955 -87444517 - AluSp SINE Alu -4 309 1 2561 93 0 0 chr11 61338955 61339267 -87444205 - AluSq SINE Alu -1 312 1 2236 165 68 19 chr11 61339267 61339417 -87444055 - Tigger7 DNA MER2_type -494 1993 1799 1511 211 17 0 chr11 61339417 61339716 -87443756 - AluJo SINE Alu -2 310 7 1353 197 0 42 chr11 61340437 61340701 -87442771 + AluJo SINE Alu 1 253 -59 769 181 0 30 chr11 61340838 61340971 -87442501 - FLAM_C SINE Alu -4 129 1 813 176 0 15 chr11 61341086 61341217 -87442255 + AluJo/FLAM SINE Alu 1 129 -183 2386 108 0 6 chr11 61341220 61341534 -87441938 + AluSx SINE Alu 1 312 0 2429 92 3 0 chr11 61341543 61341848 -87441624 + AluSp SINE Alu 1 306 -7 2217 91 67 0 chr11 61341867 61342152 -87441320 + AluSx SINE Alu 1 304 -8 2273 125 0 0 chr11 61342864 61343159 -87440313 - AluSx SINE Alu -14 298 4 800 263 110 4 chr11 61343210 61343446 -87440026 + MIR SINE MIR 1 261 -1 2311 119 0 0 chr11 61343469 61343772 -87439700 + AluSq SINE Alu 1 303 -10 326 248 69 65 chr11 61345027 61345104 -87438368 + L1MC/D LINE L1 5291 5366 -814 2089 98 0 7 chr11 61345104 61345381 -87438091 + AluY SINE Alu 25 299 -12 326 248 69 65 chr11 61345381 61345549 -87437923 + L1MC/D LINE L1 5366 5542 -638 195 42 0 0 chr11 61345672 61345696 -87437776 + (CA)n Simple_repeat Simple_repeat 2 25 0 2427 213 74 34 chr11 61345765 61346385 -87437087 + MER21B LTR ERV1 1 645 -218 216 0 0 0 chr11 61347215 61347239 -87436233 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 225 0 0 0 chr11 61347383 61347408 -87436064 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 1404 201 0 42 chr11 61347413 61347701 -87435771 - AluSx SINE Alu -36 276 1 500 285 101 65 chr11 61347705 61348073 -87435399 + L1MC4a LINE L1 6096 6476 -1332 2474 60 0 17 chr11 61348158 61348459 -87435013 + AluY SINE Alu 1 296 -15 261 327 48 6 chr11 61348477 61348642 -87434830 + L1MC4a LINE L1 6542 6713 -1095 262 218 9 118 chr11 61348702 61348812 -87434660 + L1MC5 LINE L1 6719 6816 -1145 3767 137 25 22 chr11 61349354 61350020 -87433452 - HERVK3 LTR ERVK -6572 671 4 2233 185 9 23 chr11 61350030 61350467 -87433005 - LTR3 LTR ERVK -1 431 1 1167 167 171 32 chr11 61350595 61350859 -87432613 + MLT1A1 LTR MaLR 1 325 -65 27 29 0 0 chr11 61350862 61350896 -87432576 + AT_rich Low_complexity Low_complexity 1 34 0 2352 85 26 0 chr11 61351738 61352043 -87431429 + AluSp SINE Alu 1 313 0 956 122 23 98 chr11 61352112 61352326 -87431146 + MER21A LTR ERV1 1 198 -733 * 1371 194 7 43 chr11 61352304 61352599 -87430873 + MER39 LTR ERV1 139 442 -265 2228 118 0 3 chr11 61352599 61352903 -87430569 + AluSq SINE Alu 1 303 -10 1371 194 7 43 chr11 61352903 61352987 -87430485 + MER39 LTR ERV1 442 527 -180 1560 165 7 14 chr11 61353663 61353942 -87429530 + AluJo SINE Alu 27 303 -9 1121 136 0 0 chr11 61353943 61354098 -87429374 + AluSg/x SINE Alu 133 287 -23 2400 81 3 3 chr11 61354105 61354402 -87429070 + AluSp SINE Alu 1 297 -16 267 31 0 0 chr11 61354566 61354598 -87428874 + (CA)n Simple_repeat Simple_repeat 2 33 0 2304 110 0 0 chr11 61354744 61355043 -87428429 - AluSq SINE Alu -14 299 1 1482 163 0 9 chr11 61355119 61355346 -87428126 - AluJo SINE Alu -87 225 1 2095 108 14 30 chr11 61355405 61355700 -87427772 + AluSx SINE Alu 1 290 -22 425 326 114 11 chr11 61356102 61356286 -87427186 + MIR SINE MIR 45 247 -15 494 123 0 0 chr11 61356357 61356430 -87427042 - MLT1A1 LTR MaLR -2 363 291 742 131 0 54 chr11 61356431 61356561 -87426911 + FLAM_C SINE Alu 2 124 -19 2093 125 0 7 chr11 61356692 61356981 -87426491 - AluSg SINE Alu -22 288 2 986 184 24 0 chr11 61356982 61357150 -87426322 + MER21A LTR ERV1 504 675 -256 1426 181 109 0 chr11 61357152 61357418 -87426054 - MLT1A1 LTR MaLR -70 295 1 1250 127 6 6 chr11 61357556 61357729 -87425743 + AluSx SINE Alu 2 174 -138 234 296 49 0 chr11 61357995 61358076 -87425396 - MIR SINE MIR -95 113 29 1164 196 29 12 chr11 61358125 61358370 -87425102 + MER21B LTR ERV1 615 863 0 1856 149 3 20 chr11 61359092 61359394 -87424078 + AluSx SINE Alu 1 297 -15 609 186 11 27 chr11 61359394 61359577 -87423895 + GA-rich Low_complexity Low_complexity 1 180 0 302 308 29 19 chr11 61359601 61359705 -87423767 + L1ME3A LINE L1 5989 6093 -77 234 176 73 29 chr11 61359766 61359834 -87423638 - MLT1A1 LTR MaLR -13 536 466 286 117 50 0 chr11 61359881 61359941 -87423531 + T-rich Low_complexity Low_complexity 2 64 0 14842 117 9 4 chr11 61361018 61363304 -87420168 - HERVK3 LTR ERVK -312 6931 4632 243 0 0 0 chr11 61363304 61363331 -87420141 + (TG)n Simple_repeat Simple_repeat 2 28 0 877 84 0 0 chr11 61363374 61363493 -87419979 - HERVK3 LTR ERVK -2985 4258 4140 772 122 9 0 chr11 61364876 61364983 -87418489 - AluSg SINE Alu -201 109 2 986 184 24 0 chr11 61364984 61365152 -87418320 + MER21A LTR ERV1 504 675 -256 1437 177 109 0 chr11 61365154 61365420 -87418052 - MLT1A1 LTR MaLR -70 295 1 1250 127 6 6 chr11 61365558 61365731 -87417741 + AluSx SINE Alu 2 174 -138 216 309 49 0 chr11 61365997 61366078 -87417394 - MIR SINE MIR -95 113 29 1180 192 29 12 chr11 61366127 61366372 -87417100 + MER21B LTR ERV1 615 863 0 2023 136 10 7 chr11 61367094 61367396 -87416076 + AluJo SINE Alu 1 303 -9 1109 136 0 0 chr11 61367398 61367552 -87415920 + AluSg/x SINE Alu 134 287 -23 2400 81 3 3 chr11 61367559 61367856 -87415616 + AluSp SINE Alu 1 297 -16 237 83 0 0 chr11 61368020 61368056 -87415416 + (CA)n Simple_repeat Simple_repeat 2 37 0 559 155 0 0 chr11 61368194 61368278 -87415194 - AluSp/q SINE Alu -14 299 216 360 111 0 0 chr11 61368402 61368456 -87415016 + (TA)n Simple_repeat Simple_repeat 1 54 0 198 0 0 0 chr11 61368456 61368478 -87414994 + (CA)n Simple_repeat Simple_repeat 1 22 0 1582 161 7 18 chr11 61368611 61368891 -87414581 - AluJb SINE Alu -6 306 30 1064 136 24 96 chr11 61368895 61369145 -87414327 + LTR56 LTR ERV1 99 330 -115 2056 119 7 7 chr11 61369150 61369435 -87414037 + AluSg SINE Alu 1 285 -25 3084 178 84 25 chr11 61369550 61369917 -87413555 - Cheshire DNA MER1_type -1660 760 416 2377 113 0 0 chr11 61369917 61370227 -87413245 + AluSg SINE Alu 1 310 0 3084 178 84 25 chr11 61370227 61370577 -87412895 - Cheshire DNA MER1_type -2004 416 1 2186 130 8 28 chr11 61370612 61370966 -87412506 - MSTC LTR MaLR 0 428 82 2259 132 0 0 chr11 61371034 61371338 -87412134 - AluSx SINE Alu -6 306 3 248 371 28 42 chr11 61372154 61372297 -87411175 + L2 LINE L2 3125 3265 -7 * 328 333 0 0 chr11 61372268 61372355 -87411117 - L2 LINE L2 -2 3311 3225 755 123 0 0 chr11 61372438 61372544 -87410928 - AluSx SINE Alu -13 299 194 1250 57 0 0 chr11 61372545 61372686 -87410786 - AluSx SINE Alu -172 141 1 1649 225 90 45 chr11 61372768 61373062 -87410410 + Charlie1a DNA MER1_type 1 280 -2481 2085 130 10 3 chr11 61373062 61373355 -87410117 - AluSx SINE Alu -14 298 4 1649 225 90 45 chr11 61373355 61373615 -87409857 + Charlie1a DNA MER1_type 280 580 -875 2227 74 3 23 chr11 61374340 61374639 -87408833 + AluSq SINE Alu 1 293 -20 715 213 87 53 chr11 61374777 61374984 -87408488 + MER20 DNA MER1_type 2 215 -4 208 270 16 32 chr11 61374986 61375049 -87408423 + MIR SINE MIR 90 151 -57 286 228 30 20 chr11 61375261 61375362 -87408110 - Charlie2 DNA MER1_type -925 1937 1836 * 340 321 52 0 chr11 61375346 61375480 -87407992 - Charlie2 DNA MER1_type -2460 322 182 2497 94 3 0 chr11 61375487 61375796 -87407676 + AluSp SINE Alu 1 310 -3 355 75 0 0 chr11 61375828 61375881 -87407591 + AluSp/q SINE Alu 248 300 -3 2353 98 6 25 chr11 61375968 61376285 -87407187 + AluSq SINE Alu 1 311 -2 13215 214 28 26 chr11 61376416 61378849 -87404623 - L1PA13 LINE L1 -1289 5508 3082 2037 131 25 35 chr11 61378849 61379019 -87404453 - AluSx SINE Alu -1 311 144 2104 144 0 3 chr11 61379019 61379318 -87404154 - AluSx SINE Alu -14 298 1 2037 131 25 35 chr11 61379318 61379461 -87404011 - AluSx SINE Alu -168 144 1 13215 214 28 26 chr11 61379461 61380288 -87403184 - L1PA13 LINE L1 -3715 3082 2259 2377 94 0 7 chr11 61380288 61380585 -87402887 + AluSx SINE Alu 1 295 -17 13215 214 28 26 chr11 61380585 61381017 -87402455 - L1PA13 LINE L1 -4538 2259 1830 4797 70 0 0 chr11 61381017 61381604 -87401868 - LTR14C LTR ERVK 0 587 1 13215 214 28 26 chr11 61381604 61381760 -87401712 - L1PA13 LINE L1 -4967 1830 1676 1483 108 0 0 chr11 61381760 61381946 -87401526 - AluSc SINE Alu -123 186 1 13215 214 28 26 chr11 61381946 61382274 -87401198 - L1PA13 LINE L1 -5121 1676 1285 371 158 30 133 chr11 61382442 61382481 -87400991 - L1MA7 LINE L1 0 6291 6250 2134 155 0 0 chr11 61382481 61382784 -87400688 - AluSx SINE Alu -9 303 1 371 158 30 133 chr11 61382784 61382909 -87400563 - L1MA7 LINE L1 -41 6250 6144 1885 171 3 3 chr11 61382910 61383219 -87400253 - AluJo SINE Alu -3 309 1 336 340 90 0 chr11 61383456 61383600 -87399872 - MIR SINE MIR -21 241 85 2120 108 14 7 chr11 61384748 61385043 -87398429 - AluSx SINE Alu -15 297 1 186 43 0 0 chr11 61385495 61385518 -87397954 + (GA)n Simple_repeat Simple_repeat 1 23 0 321 140 0 0 chr11 61385990 61386047 -87397425 + (TCCCC)n Simple_repeat Simple_repeat 2 58 0 216 302 62 0 chr11 61386448 61386544 -87396928 + MIR SINE MIR 99 200 -62 370 302 46 22 chr11 61386589 61386767 -87396705 + MIR SINE MIR 25 207 -55 338 208 138 30 chr11 61387333 61387492 -87395980 + MER20B DNA MER1_type 35 214 -5 376 266 14 7 chr11 61387795 61388029 -87395443 + (CTG)n Simple_repeat Simple_repeat 1 235 0 437 253 144 14 chr11 61388267 61388413 -87395059 + MIR SINE MIR 72 236 -26 541 233 269 10 chr11 61388537 61388730 -87394742 - MIR SINE MIR -4 258 16 2285 112 3 16 chr11 61390327 61390641 -87392831 - AluSx SINE Alu -2 310 1 374 312 44 21 chr11 61391072 61391364 -87392108 + L1MDa LINE L1 30 651 -5879 312 164 55 170 chr11 61391973 61392138 -87391334 + L1MDa LINE L1 946 1091 -5452 733 92 10 0 chr11 61394645 61394743 -87388729 + AluSq/x SINE Alu 33 131 -182 852 122 70 192 chr11 61396384 61396464 -87387008 + Charlie1 DNA MER1_type 2314 2402 -359 2151 116 0 7 chr11 61396464 61396756 -87386716 - AluSc SINE Alu -19 290 1 852 122 70 192 chr11 61396756 61397103 -87386369 + Charlie1 DNA MER1_type 2402 2689 -72 1282 152 49 0 chr11 61397105 61397309 -87386163 - AluJo SINE Alu -13 299 86 219 286 64 29 chr11 61397463 61397603 -87385869 - L2 LINE L2 -310 2962 2818 295 187 0 40 chr11 61398288 61398363 -87385109 + LTR16C LTR ERVL 419 490 -1 229 222 196 0 chr11 61398600 61398715 -87384757 - MIR SINE MIR -65 143 11 262 223 99 74 chr11 61399278 61399399 -87384073 + MIR SINE MIR 108 231 -31 2218 109 0 35 chr11 61399436 61399748 -87383724 + AluSx SINE Alu 1 301 -11 303 256 7 80 chr11 61399938 61400075 -87383397 + L2 LINE L2 2924 3050 -222 514 356 27 0 chr11 61400130 61400352 -87383120 - MIR SINE MIR -6 256 29 224 370 93 0 chr11 61400533 61400641 -87382831 + MIR3 SINE MIR 42 159 -49 894 225 5 24 chr11 61400642 61400851 -87382621 - MER3 DNA MER1_type 0 209 5 339 315 89 20 chr11 61401845 61401991 -87381481 + MIR SINE MIR 34 189 -73 429 299 55 19 chr11 61402038 61402240 -87381232 - MIR SINE MIR -48 214 4 2098 132 16 0 chr11 61404191 61404494 -87378978 + AluSx SINE Alu 1 308 -4 2073 139 36 6 chr11 61404534 61404866 -87378606 - MER2 DNA MER2_type 0 344 3 2317 100 0 7 chr11 61405031 61405332 -87378140 + AluSg SINE Alu 1 299 -11 394 294 244 10 chr11 61405496 61405795 -87377677 + L2 LINE L2 2945 3313 0 381 251 164 18 chr11 61406638 61406809 -87376663 - MIR SINE MIR -65 197 2 2208 208 10 0 chr11 61408114 61408614 -87374858 + L1PA15 LINE L1 4827 5331 -815 689 179 0 137 chr11 61408614 61408823 -87374649 + AluJb SINE Alu 137 322 0 5320 118 28 6 chr11 61408823 61409650 -87373822 + L1PA15 LINE L1 5321 6165 0 593 294 62 73 chr11 61409777 61410161 -87373311 + L1M4 LINE L1 4233 4612 -1534 590 256 43 12 chr11 61410236 61410400 -87373072 + MIR SINE MIR 82 250 -12 307 289 116 26 chr11 61410818 61411050 -87372422 + Charlie2 DNA MER1_type 66 318 -2464 346 270 17 0 chr11 61411056 61411171 -87372301 + Charlie2 DNA MER1_type 1884 2000 -862 4488 132 62 32 chr11 61411218 61411427 -87372045 + L1MA6 LINE L1 5410 5611 -689 1228 211 4 25 chr11 61411427 61411669 -87371803 + MER8 DNA MER2_type 1 237 -2 4488 132 62 32 chr11 61411669 61411976 -87371496 + L1MA6 LINE L1 5611 5907 -393 2408 99 0 10 chr11 61411976 61412290 -87371182 + AluSx SINE Alu 1 311 -1 4488 132 62 32 chr11 61412290 61412637 -87370835 + L1MA6 LINE L1 5907 6300 0 768 243 99 22 chr11 61412637 61412950 -87370522 + Charlie2 DNA MER1_type 1980 2316 -546 189 323 0 32 chr11 61413073 61413135 -87370337 - L3b LINE CR1 -13 1570 1511 1819 173 0 40 chr11 61413230 61413553 -87369919 + AluJo SINE Alu 1 310 -2 2120 113 0 20 chr11 61413619 61413937 -87369535 - AluSx SINE Alu 0 312 1 2294 106 0 7 chr11 61414647 61414949 -87368523 + AluSg SINE Alu 1 300 -10 396 0 0 0 chr11 61414960 61415004 -87368468 + (GGAA)n Simple_repeat Simple_repeat 2 45 0 2193 111 3 16 chr11 61416357 61416664 -87366808 - AluSc SINE Alu -6 303 1 215 284 21 95 chr11 61416804 61416899 -87366573 + MIR SINE MIR 38 125 -83 2455 78 3 0 chr11 61417523 61417832 -87365640 + AluSx SINE Alu 1 310 -2 228 67 0 0 chr11 61417839 61417869 -87365603 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 1138 193 119 0 chr11 61419589 61419858 -87363614 + L1MB3 LINE L1 4532 4832 -1314 2890 157 31 34 chr11 61419859 61420444 -87363028 + L1MB3 LINE L1 5600 6182 -1 625 180 0 10 chr11 61420658 61420914 -87362558 + AluJ SINE Alu 1 303 -9 241 328 29 58 chr11 61422306 61422477 -87360995 + MIR SINE MIR 88 253 -9 22 0 0 0 chr11 61422605 61422627 -87360845 + AT_rich Low_complexity Low_complexity 1 22 0 192 77 0 0 chr11 61423250 61423276 -87360196 + (A)n Simple_repeat Simple_repeat 1 26 0 2169 108 0 16 chr11 61423486 61423820 -87359652 + AluSx SINE Alu 1 329 0 2338 115 3 0 chr11 61424560 61424872 -87358600 + AluSq SINE Alu 1 313 0 622 206 43 0 chr11 61425727 61425868 -87357604 - L1M4 LINE L1 -958 5188 5042 26496 80 12 3 chr11 61425870 61430474 -87352998 - L1PA7 LINE L1 0 6469 1825 3290 132 13 2 chr11 61430474 61430997 -87352475 - L1PA7 LINE L1 -5928 533 5 1089 222 56 0 chr11 61431002 61431290 -87352182 - L1M4 LINE L1 -1097 5049 4746 632 143 9 0 chr11 61431290 61431395 -87352077 - HUERS-P1 LTR ERV1 -6157 106 1 1090 97 0 0 chr11 61431395 61431540 -87351932 - LTR8 LTR ERV1 0 691 547 3414 244 125 42 chr11 61431542 61431641 -87351831 - L1M4 LINE L1 -1390 4756 4667 1726 180 29 0 chr11 61431641 61431919 -87351553 - AluJb SINE Alu -25 287 2 3414 244 125 42 chr11 61431919 61431989 -87351483 - L1M4 LINE L1 -1479 4667 4604 1580 150 103 0 chr11 61431989 61432262 -87351210 + AluSg SINE Alu 1 301 -9 3414 244 125 42 chr11 61432262 61433014 -87350458 - L1M4 LINE L1 -1542 4604 3916 1907 160 4 0 chr11 61433014 61433316 -87350156 + AluSx SINE Alu 1 303 0 3414 244 125 42 chr11 61433316 61434038 -87349434 - L1M4 LINE L1 -2230 3916 2974 3330 209 57 25 chr11 61434036 61434925 -87348547 + L1MC/D LINE L1 4292 5220 -1022 * 895 159 0 0 chr11 61434925 61435057 -87348415 + FLAM_C SINE Alu 1 132 -1 3330 209 57 25 chr11 61435057 61435371 -87348101 + L1MC/D LINE L1 5220 5523 -719 564 226 97 56 chr11 61435664 61435859 -87347613 - MER58A DNA MER1_type -18 206 4 204 51 51 51 chr11 61436727 61436766 -87346706 + (CAGA)n Simple_repeat Simple_repeat 4 42 0 1962 162 26 9 chr11 61437567 61437906 -87345566 - MER7A DNA MER2_type 0 346 4 376 275 36 7 chr11 61438010 61438060 -87345412 - MIR SINE MIR 0 262 215 2273 100 3 3 chr11 61438060 61438359 -87345113 - AluSq SINE Alu -14 299 1 376 275 36 7 chr11 61438359 61438375 -87345097 - MIR SINE MIR -47 215 201 252 0 0 0 chr11 61438375 61438403 -87345069 + (CA)n Simple_repeat Simple_repeat 2 29 0 376 275 36 7 chr11 61438403 61438473 -87344999 - MIR SINE MIR -61 201 121 250 278 69 52 chr11 61438728 61438901 -87344571 + MER5B DNA MER1_type 3 178 0 191 269 0 0 chr11 61440648 61440700 -87342772 - MIR3 SINE MIR -7 201 150 272 208 89 69 chr11 61441608 61441709 -87341763 + MIR SINE MIR 19 121 -87 876 243 89 93 chr11 61444079 61444141 -87339331 - MLT1D LTR MaLR -4 501 440 1832 133 17 10 chr11 61444141 61444442 -87339030 + AluSc SINE Alu 1 303 -6 8616 44 1 1 chr11 61444443 61445412 -87338060 + LTR5 LTR ERVK 1 969 0 876 243 89 93 chr11 61445412 61445829 -87337643 - MLT1D LTR MaLR -64 441 22 2233 101 0 11 chr11 61446223 61446537 -87336935 - AluSp SINE Alu 0 311 1 7014 59 153 0 chr11 61447057 61447992 -87335480 - L1PA7 LINE L1 -2 6152 5186 214 338 0 13 chr11 61448268 61448345 -87335127 + MER5B DNA MER1_type 1 76 -102 2090 89 33 10 chr11 61448634 61448936 -87334536 + AluSc SINE Alu 1 309 0 669 191 135 11 chr11 61448972 61449150 -87334322 + L1MB4 LINE L1 5981 6180 0 714 262 157 59 chr11 61449934 61450184 -87333288 + HAL1 LINE L1 1025 1249 -1258 1812 148 42 7 chr11 61450184 61450467 -87333005 + AluJb SINE Alu 1 293 -19 714 262 157 59 chr11 61450467 61450892 -87332580 + HAL1 LINE L1 1249 1766 -741 209 267 60 26 chr11 61451184 61451300 -87332172 - L2 LINE L2 -221 3051 2932 585 218 24 35 chr11 61451446 61451616 -87331856 - MER20 DNA MER1_type 0 219 52 2086 104 14 21 chr11 61452083 61452371 -87331101 + AluSx SINE Alu 6 291 -21 309 291 86 9 chr11 61453149 61453297 -87330175 + MIR SINE MIR 11 181 -81 407 234 47 31 chr11 61453297 61453425 -87330047 - MER94 DNA DNA -3 131 2 309 291 86 9 chr11 61453425 61453486 -87329986 + MIR SINE MIR 181 236 -26 778 158 89 25 chr11 61453510 61453713 -87329759 + L1MA9 LINE L1 6097 6312 0 2061 137 0 16 chr11 61453839 61454153 -87329319 + AluJb SINE Alu 1 309 -3 363 253 191 16 chr11 61454390 61454584 -87328888 - MIR SINE MIR -21 241 14 180 111 0 0 chr11 61455858 61455885 -87327587 + (T)n Simple_repeat Simple_repeat 1 27 0 419 319 65 40 chr11 61456039 61456390 -87327082 + L2 LINE L2 2926 3285 -28 2236 85 3 10 chr11 61456493 61456621 -87326851 + AluSg SINE Alu 1 128 -182 423 0 0 0 chr11 61456621 61456668 -87326804 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 2236 85 3 10 chr11 61456668 61456832 -87326640 + AluSg SINE Alu 128 291 -19 2368 89 0 0 chr11 61456874 61457167 -87326305 + AluSx SINE Alu 4 296 -16 27 29 0 0 chr11 61457443 61457477 -87325995 + AT_rich Low_complexity Low_complexity 1 34 0 2265 106 0 13 chr11 61457583 61457916 -87325556 + AluSx SINE Alu 1 312 0 289 250 33 0 chr11 61458054 61458146 -87325326 + GA-rich Low_complexity Low_complexity 1 95 0 387 0 0 0 chr11 61459416 61459459 -87324013 + (TG)n Simple_repeat Simple_repeat 2 44 0 1784 142 10 51 chr11 61459459 61459755 -87323717 - AluJo SINE Alu -28 284 1 198 0 0 0 chr11 61460167 61460189 -87323283 + (T)n Simple_repeat Simple_repeat 1 22 0 253 208 0 0 chr11 61460634 61460687 -87322785 + (CA)n Simple_repeat Simple_repeat 1 53 0 2202 113 0 3 chr11 61460704 61461004 -87322468 - AluSx SINE Alu -13 299 1 2203 121 0 0 chr11 61461191 61461480 -87321992 - AluSx SINE Alu -23 289 1 2098 118 0 0 chr11 61461693 61461980 -87321492 - AluSq SINE Alu -3 310 24 1957 127 0 4 chr11 61462148 61462416 -87321056 + AluSx SINE Alu 16 282 -30 508 273 7 0 chr11 61462536 61462679 -87320793 - FRAM SINE Alu -32 144 1 330 274 0 0 chr11 61462942 61463044 -87320428 + (TA)n Simple_repeat Simple_repeat 2 103 0 324 267 47 0 chr11 61463046 61463132 -87320340 - L1MC4 LINE L1 -1339 6703 6614 689 190 16 0 chr11 61463145 61463266 -87320206 - FLAM_C SINE Alu -19 124 2 558 162 7 63 chr11 61464409 61464551 -87318921 - MER96B DNA MER1_type? -238 179 46 527 257 87 47 chr11 61464818 61465071 -87318401 - ORSL DNA AcHobo 0 275 13 17866 202 13 15 chr11 61465073 61465980 -87317492 + LTR10B-int LTR ERV1 797 1704 -6081 3673 191 36 60 chr11 61465980 61466957 -87316515 + LTR5 LTR ERVK 2 954 -15 17866 202 13 15 chr11 61466957 61469372 -87314100 + LTR10B-int LTR ERV1 1704 4112 -3673 323 269 0 0 chr11 61469360 61469438 -87314034 + LTR10B-int LTR ERV1 1414 1491 -5405 * 12049 250 36 36 chr11 61469433 61472835 -87310637 + LTR10B-int LTR ERV1 4099 7500 -285 2858 169 27 51 chr11 61472836 61473457 -87310015 + LTR10E LTR ERV1 1 609 0 1471 216 0 11 chr11 61473465 61473748 -87309724 + LTR10B-int LTR ERV1 6370 6649 0 1338 238 135 30 chr11 61473748 61474243 -87309229 + LTR10B LTR ERV1 1 547 0 2943 108 29 2 chr11 61474243 61474688 -87308784 + MER51-int LTR ERV1 1039 1495 -6321 237 229 0 0 chr11 61474704 61474752 -87308720 + MER4A LTR ERV1 51 98 -566 744 134 59 67 chr11 61474757 61474959 -87308513 + MER4A LTR ERV1 276 534 -130 9039 93 61 14 chr11 61474959 61475746 -87307726 + MER51B-int LTR ERV1 1802 2551 -5265 2157 119 0 25 chr11 61475746 61476064 -87307408 + AluSg SINE Alu 1 310 0 9039 93 61 14 chr11 61476064 61476734 -87306738 + MER51B-int LTR ERV1 2551 3327 -4489 1839 135 79 64 chr11 61476716 61476846 -87306626 + MER51B-int LTR ERV1 2829 2956 -2990 * 2477 91 0 0 chr11 61476846 61477155 -87306317 + AluSc SINE Alu 1 309 0 1839 135 79 64 chr11 61477155 61477504 -87305968 + MER51B-int LTR ERV1 2956 3172 -2774 * 2053 105 15 8 chr11 61477484 61477889 -87305583 + MER51B-int LTR ERV1 2211 2662 -2555 * 7939 132 28 5 chr11 61477866 61479521 -87303951 + MER51B-int LTR ERV1 5407 7147 -390 621 207 22 7 chr11 61479523 61479658 -87303814 + LTR54B LTR ERV1 5 141 -357 2028 153 64 3 chr11 61479658 61479984 -87303488 + MER51B-int LTR ERV1 7470 7815 -1 2504 109 50 0 chr11 61479986 61480345 -87303127 + MER51B LTR ERV1 1 377 0 1804 166 3 7 chr11 61480345 61480640 -87302832 + AluJb SINE Alu 19 312 0 430 238 32 0 chr11 61480642 61480768 -87302704 + L1M4 LINE L1 2767 2896 -3250 2377 104 3 0 chr11 61481119 61481428 -87302044 - AluSx SINE Alu -2 310 1 1423 152 7 2 chr11 61481489 61481759 -87301713 - L1PA15-16 LINE L1 -3836 3013 2738 1406 234 44 3 chr11 61481749 61482112 -87301360 + L1P LINE L1 4779 5156 -990 * 500 128 13 0 chr11 61483365 61483443 -87300029 + MADE1 DNA Mariner 1 79 -1 5824 138 29 2 chr11 61484024 61485246 -87298226 + L1PB1 LINE L1 4893 6149 -2 2767 186 29 4 chr11 61485257 61485816 -87297656 - L1MC1 LINE L1 -281 6052 5480 223 361 28 0 chr11 61486070 61486178 -87297294 + MIR SINE MIR 73 183 -79 2265 232 46 48 chr11 61486570 61487294 -87296178 - L1MB2 LINE L1 0 6171 5450 981 113 0 21 chr11 61487584 61487870 -87295602 + (TG)n Simple_repeat Simple_repeat 1 280 0 298 319 97 9 chr11 61488395 61488508 -87294964 - L2 LINE L2 0 3272 3150 412 290 21 59 chr11 61489129 61489315 -87294157 - MIR SINE MIR -13 249 71 380 293 32 25 chr11 61489529 61489686 -87293786 + MER5B DNA MER1_type 3 160 -18 6119 47 0 0 chr11 61489745 61490516 -87292956 - L1PA4 LINE L1 -2360 3786 3016 961 50 8 0 chr11 61490516 61490637 -87292835 + L1PA4 LINE L1 3778 3899 -2247 5218 35 0 0 chr11 61490637 61491244 -87292228 + L1PA4 LINE L1 5548 6155 0 255 253 13 0 chr11 61492675 61492750 -87290722 + MIR SINE MIR 46 121 -141 1373 213 0 14 chr11 61492839 61493116 -87290356 + AluJb SINE Alu 1 273 -39 769 260 117 67 chr11 61495602 61495889 -87287583 - MLT1D LTR MaLR -4 501 179 2460 51 0 0 chr11 61495889 61496184 -87287288 - AluY SINE Alu -8 303 9 769 260 117 67 chr11 61496184 61496373 -87287099 - MLT1D LTR MaLR -326 179 1 206 246 15 62 chr11 61497303 61497368 -87286104 + MIR SINE MIR 152 213 -49 304 250 13 26 chr11 61497548 61497624 -87285848 + MER5B DNA MER1_type 1 75 -103 526 224 84 0 chr11 61497961 61498104 -87285368 + L1MB4 LINE L1 5981 6135 -45 1958 122 17 0 chr11 61498111 61498399 -87285073 + AluSc SINE Alu 1 293 -16 310 42 0 0 chr11 61498856 61498904 -87284568 - AluSp SINE Alu -1 302 255 1597 81 5 5 chr11 61498904 61499113 -87284359 - AluSp SINE Alu -104 209 1 635 218 109 66 chr11 61499630 61499933 -87283539 + HAL1 LINE L1 1456 1771 -736 313 323 95 11 chr11 61499955 61500144 -87283328 + HAL1 LINE L1 2303 2507 0 247 256 56 32 chr11 61500465 61500590 -87282882 - L2 LINE L2 -213 3059 2932 858 199 41 25 chr11 61500679 61500875 -87282597 - MER20 DNA MER1_type 0 219 21 3080 125 2 7 chr11 61501792 61502225 -87281247 + LTR3 LTR ERVK 1 431 -1 13543 105 31 2 chr11 61502230 61504147 -87279325 + HERVK3 LTR ERVK 39 2011 -5232 1637 116 4 0 chr11 61504147 61504372 -87279100 - LTR3 LTR ERVK -206 226 1 2028 87 0 14 chr11 61504523 61504800 -87278672 + AluY SINE Alu 35 307 -4 354 235 152 70 chr11 61504891 61505038 -87278434 + MIR SINE MIR 11 185 -77 355 232 56 32 chr11 61505038 61505163 -87278309 - MER94 DNA DNA -3 131 4 354 235 152 70 chr11 61505163 61505245 -87278227 + MIR SINE MIR 185 259 -3 1551 169 46 11 chr11 61505461 61505745 -87277727 + AluSx SINE Alu 3 296 -16 521 344 82 23 chr11 61506593 61506898 -87276574 + HAL1 LINE L1 1024 1346 -1161 438 300 189 9 chr11 61506905 61507138 -87276334 + HAL1 LINE L1 1383 1657 -850 2121 88 27 3 chr11 61507145 61507442 -87276030 - AluSg SINE Alu -6 304 1 225 0 0 0 chr11 61507466 61507491 -87275981 + (T)n Simple_repeat Simple_repeat 1 25 0 5019 179 28 49 chr11 61507589 61508237 -87275235 + L1PA16 LINE L1 4415 5075 -1091 368 192 14 0 chr11 61508237 61508310 -87275162 + MER41D LTR ERV1 38 111 -446 5019 179 28 49 chr11 61508310 61509380 -87274092 + L1PA16 LINE L1 5075 6164 -2 1777 142 14 3 chr11 61509441 61509729 -87273743 + AluSx SINE Alu 2 292 -20 235 345 54 6 chr11 61509729 61509897 -87273575 + HAL1 LINE L1 2328 2503 -4 213 304 36 43 chr11 61510243 61510288 -87273184 - L2 LINE L2 -221 3051 3007 3183 169 3 35 chr11 61510288 61510863 -87272609 + MER41D LTR ERV1 1 557 0 213 304 36 43 chr11 61510863 61510955 -87272517 - L2 LINE L2 -265 3007 2915 392 222 78 130 chr11 61511113 61511343 -87272129 - MER20 DNA MER1_type -1 218 1 5079 140 46 79 chr11 61512269 61512487 -87270985 - L1MA3 LINE L1 -1 6304 6080 2225 106 0 0 chr11 61512487 61512780 -87270692 - AluSc SINE Alu -16 293 1 5079 140 46 79 chr11 61512780 61513723 -87269749 - L1MA3 LINE L1 -225 6080 5184 476 243 34 117 chr11 61514653 61514892 -87268580 - MER20 DNA MER1_type 0 219 1 474 252 73 7 chr11 61516027 61516178 -87267294 + MIR SINE MIR 11 171 -91 303 318 23 23 chr11 61516180 61516309 -87267163 - MER94 DNA DNA -4 130 2 471 288 132 24 chr11 61516740 61516952 -87266520 - MIR SINE MIR -6 256 22 1951 123 31 0 chr11 61517375 61517668 -87265804 + AluSx SINE Alu 1 302 -10 1908 138 0 7 chr11 61518271 61518567 -87264905 - AluSc SINE Alu -15 294 1 375 377 112 16 chr11 61518697 61519071 -87264401 + L2 LINE L2 2889 3298 -15 2198 99 3 0 chr11 61519147 61519439 -87264033 - AluSp SINE Alu -20 293 1 243 227 13 40 chr11 61519972 61520047 -87263425 + GA-rich Low_complexity Low_complexity 3 75 0 728 157 0 0 chr11 61520429 61520537 -87262935 - AluSq/x SINE Alu -203 109 2 381 219 0 0 chr11 61521393 61521553 -87261919 + (CA)n Simple_repeat Simple_repeat 1 160 0 234 195 0 0 chr11 61521578 61521665 -87261807 + (CA)n Simple_repeat Simple_repeat 2 88 0 189 0 0 0 chr11 61522076 61522097 -87261375 + (A)n Simple_repeat Simple_repeat 1 21 0 1241 224 44 29 chr11 61522147 61522490 -87260982 + L1MB2 LINE L1 5822 6169 -2 198 0 0 0 chr11 61522681 61522703 -87260769 + (T)n Simple_repeat Simple_repeat 1 22 0 287 136 0 91 chr11 61523228 61523294 -87260178 + Zaphod DNA AcHobo 51 110 -3921 2606 122 39 3 chr11 61524019 61524403 -87259069 - MER48 LTR ERV1 0 398 1 1314 75 52 0 chr11 61524403 61524577 -87258895 - HERVH48 LTR ERV1 0 6654 6472 * 9476 120 4 0 chr11 61524565 61525910 -87257562 - HERVH48 LTR ERV1 -988 5666 4317 296 284 52 0 chr11 61526335 61526469 -87257003 + L1M4 LINE L1 2756 2896 -3250 4908 103 10 26 chr11 61526615 61527072 -87256400 - LTR2B-int LTR ERV1 -2763 2454 2012 2066 128 10 0 chr11 61527072 61527378 -87256094 + AluSc SINE Alu 1 309 0 4908 103 10 26 chr11 61527378 61527697 -87255775 - LTR2B-int LTR ERV1 -3205 2012 1690 969 141 12 6 chr11 61527690 61527853 -87255619 + LTR10D-int LTR ERV1 944 1107 -5491 * 294 73 0 0 chr11 61527875 61527916 -87255556 + (TCTCCC)n Simple_repeat Simple_repeat 2 42 0 196 30 61 0 chr11 61529385 61529418 -87254054 + (TG)n Simple_repeat Simple_repeat 1 35 0 262 202 12 0 chr11 61529711 61529795 -87253677 + (CGTG)n Simple_repeat Simple_repeat 1 85 0 279 164 0 0 chr11 61529843 61529904 -87253568 + (TG)n Simple_repeat Simple_repeat 1 61 0 225 320 24 8 chr11 61529907 61530032 -87253440 + G-rich Low_complexity Low_complexity 2 128 0 4259 105 51 75 chr11 61531806 61533151 -87250321 + SVA Other Other 1 868 -520 695 67 8 37 chr11 61533168 61533302 -87250170 + SVA Other Other 665 794 -592 5943 65 44 40 chr11 61533315 61534307 -87249165 + SVA Other Other 433 1428 0 655 75 87 16 chr11 61534307 61534455 -87249017 + LTR10D-int LTR ERV1 551 1289 -4320 2035 163 108 37 chr11 61534455 61535018 -87248454 + LTR10D-int LTR ERV1 3074 3676 -2922 * 14160 137 47 18 chr11 61535015 61535160 -87248312 + LTR10D-int LTR ERV1 3815 3954 -2644 2027 132 0 0 chr11 61535160 61535447 -87248025 + AluSx SINE Alu 1 287 -25 14160 137 47 18 chr11 61535447 61538012 -87245460 + LTR10D-int LTR ERV1 3954 6598 0 873 109 0 29 chr11 61538094 61538231 -87245241 - LTR2B-int LTR ERV1 -2431 4167 4035 * 8421 150 130 63 chr11 61538221 61539638 -87243834 - LTR2B-int LTR ERV1 -4362 2236 916 3342 99 44 14 chr11 61539638 61540134 -87243338 + LTR10D LTR ERV1 3 513 0 8421 150 130 63 chr11 61540134 61540435 -87243037 - LTR2B-int LTR ERV1 -5682 916 637 3756 66 45 0 chr11 61540435 61540904 -87242568 - LTR2B LTR ERV1 0 490 1 8421 150 130 63 chr11 61540904 61541976 -87241496 - LTR2B-int LTR ERV1 -5961 637 1 2778 123 2 10 chr11 61541980 61542385 -87241087 - MER4A LTR ERV1 -2 662 261 646 120 0 20 chr11 61542385 61542485 -87240987 - MER4A LTR ERV1 -566 98 1 925 188 101 123 chr11 61542493 61542907 -87240565 - MER4-int LTR ERV1 -5596 1002 598 25983 36 0 0 chr11 61542908 61546815 -87236657 + L1PA4 LINE L1 2261 6172 0 495 241 80 25 chr11 61547277 61547439 -87236033 - L1MB4 LINE L1 -27 6153 5983 189 313 0 16 chr11 61547771 61547835 -87235637 + MER5B DNA MER1_type 108 170 -8 197 227 15 61 chr11 61548018 61548084 -87235388 - MIR SINE MIR -49 213 151 932 248 152 63 chr11 61549029 61549489 -87233983 + MLT1D LTR MaLR 1 501 -4 195 42 0 0 chr11 61550388 61550412 -87233060 + (GAAA)n Simple_repeat Simple_repeat 2 25 0 1570 167 48 27 chr11 61551818 61551970 -87231502 - AluJb SINE Alu -13 299 152 333 0 0 0 chr11 61551970 61552007 -87231465 + (TG)n Simple_repeat Simple_repeat 2 38 0 1570 167 48 27 chr11 61552007 61552147 -87231325 - AluJb SINE Alu -160 152 1 2284 97 13 3 chr11 61552436 61552744 -87230728 + AluSp SINE Alu 1 311 -2 244 345 30 24 chr11 61554101 61554269 -87229203 - MER5B DNA MER1_type -6 172 4 373 267 67 62 chr11 61554463 61554658 -87228814 + MIR SINE MIR 50 245 -17 7963 117 27 11 chr11 61555228 61556475 -87226997 + HUERS-P3b LTR ERV1 2661 2827 -2188 380 80 0 0 chr11 61556466 61556516 -87226956 + HUERS-P3b LTR ERV1 5330 5379 -2039 * 23942 125 14 84 chr11 61556517 61561071 -87222401 - L1P LINE L1 -1901 4245 12 2041 162 27 44 chr11 61561172 61561843 -87221629 - L1MC4a LINE L1 -372 5794 5104 331 125 0 0 chr11 61561866 61561914 -87221558 - Alu SINE Alu -252 48 1 389 250 12 0 chr11 61561914 61562024 -87221448 - L1MC4a LINE L1 -1763 4383 4272 306 271 58 13 chr11 61562029 61562184 -87221288 - L1M1 LINE L1 -3905 3660 3499 * 5914 101 31 13 chr11 61562169 61562332 -87221140 - L1MA2 LINE L1 0 6304 6145 255 31 0 0 chr11 61562332 61562364 -87221108 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2357 71 0 0 chr11 61562364 61562646 -87220826 - AluY SINE Alu -29 282 1 5914 101 31 13 chr11 61562646 61563383 -87220089 - L1MA2 LINE L1 -158 6146 5387 2415 130 72 5 chr11 61563926 61564327 -87219145 - MSTA LTR MaLR 0 428 1 643 251 43 99 chr11 61564334 61564400 -87219072 - MLT1J LTR MaLR 0 511 443 2117 111 3 0 chr11 61564400 61564737 -87218735 - AluSq SINE Alu 0 313 1 643 251 43 99 chr11 61564737 61564973 -87218499 - MLT1J LTR MaLR -68 443 226 2334 99 0 3 chr11 61565376 61565678 -87217794 + AluSq SINE Alu 1 301 -12 1906 161 3 7 chr11 61565866 61566170 -87217302 - AluJb SINE Alu -9 303 1 1073 238 80 123 chr11 61566483 61566609 -87216863 + LTR33 LTR ERVL 47 177 -344 2013 119 7 7 chr11 61566609 61566895 -87216577 + AluSx SINE Alu 3 288 -24 1073 238 80 123 chr11 61566895 61567256 -87216216 + LTR33 LTR ERVL 177 513 -8 189 0 0 0 chr11 61567887 61567908 -87215564 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 262 219 35 9 chr11 61568379 61568493 -87214979 + (TA)n Simple_repeat Simple_repeat 1 117 0 24 85 0 0 chr11 61568495 61568554 -87214918 + AT_rich Low_complexity Low_complexity 1 59 0 269 109 22 0 chr11 61568589 61568635 -87214837 + (CA)n Simple_repeat Simple_repeat 2 48 0 574 259 101 13 chr11 61569482 61569710 -87213762 + MIR SINE MIR 14 261 -1 308 290 10 50 chr11 61570457 61570557 -87212915 - L2 LINE L2 -30 3283 3188 2085 128 14 0 chr11 61570865 61571161 -87212311 + AluSx SINE Alu 1 300 -12 332 296 24 8 chr11 61571493 61571618 -87211854 - L2 LINE L2 -873 2441 2315 661 98 33 0 chr11 61571656 61571748 -87211724 + AluS SINE Alu 2 96 -216 502 328 158 31 chr11 61571805 61572229 -87211243 + L2 LINE L2 2836 3313 0 259 352 74 33 chr11 61572230 61572594 -87210878 - L2 LINE L2 -1007 2307 1929 7023 85 13 35 chr11 61572628 61572985 -87210487 - L1MA3 LINE L1 0 6305 5942 2374 106 0 6 chr11 61572985 61573296 -87210176 - AluSc SINE Alu 0 309 1 7023 85 13 35 chr11 61573296 61573988 -87209484 - L1MA3 LINE L1 -363 5942 5279 2081 110 50 0 chr11 61573992 61574273 -87209199 + AluSq SINE Alu 1 295 -18 186 290 16 0 chr11 61574515 61574577 -87208895 + L3 LINE CR1 808 870 -707 1910 121 4 4 chr11 61575026 61575299 -87208173 + AluSq SINE Alu 38 310 -3 3109 126 33 66 chr11 61575798 61576371 -87207101 + MLT2B3 LTR ERVL 1 554 0 625 194 29 29 chr11 61576592 61576731 -87206741 - MER58B DNA MER1_type -3 338 200 2145 106 3 30 chr11 61576749 61577050 -87206422 + AluSc SINE Alu 1 293 -16 620 180 31 0 chr11 61577474 61577602 -87205870 - MER58B DNA MER1_type -134 207 76 2468 74 6 0 chr11 61577603 61577914 -87205558 + AluSq SINE Alu 1 313 0 4130 33 19 0 chr11 61579162 61579643 -87203829 + LTR2B LTR ERV1 1 490 0 799 127 30 0 chr11 61579759 61579893 -87203579 + L1PA13 LINE L1 6026 6163 0 6671 118 12 10 chr11 61579979 61580946 -87202526 + LTR5 LTR ERVK 1 969 0 2168 91 0 82 chr11 61581067 61581407 -87202065 + AluSx SINE Alu 1 312 0 2296 105 3 0 chr11 61581698 61582002 -87201470 + AluSq SINE Alu 1 305 -8 236 264 0 0 chr11 61582382 61582435 -87201037 + HAL1 LINE L1 1686 1738 -769 2144 134 0 3 chr11 61582452 61582758 -87200714 + AluSg SINE Alu 1 305 -5 956 79 29 14 chr11 61582762 61582902 -87200570 - MLT2B2 LTR ERVL 0 515 374 1658 161 0 4 chr11 61583087 61583341 -87200131 + AluJb SINE Alu 37 289 -23 1999 103 16 29 chr11 61583795 61584106 -87199366 + AluSc SINE Alu 1 307 -2 450 83 0 0 chr11 61584807 61584879 -87198593 + (ATG)n Simple_repeat Simple_repeat 2 73 0 1848 176 3 7 chr11 61585813 61586119 -87197353 - AluJb SINE Alu -7 305 1 4291 131 34 47 chr11 61586210 61586810 -87196662 - LTR1 LTR ERV1 0 785 195 2093 107 4 0 chr11 61586810 61587120 -87196352 - AluY SINE Alu 0 311 1 4291 131 34 47 chr11 61587120 61587313 -87196159 - LTR1 LTR ERV1 -590 195 1 2034 154 0 10 chr11 61587727 61588039 -87195433 + AluSx SINE Alu 1 309 -3 334 229 38 69 chr11 61588334 61588465 -87195007 + HAL1 LINE L1 47 173 -2334 383 240 146 99 chr11 61588576 61588960 -87194512 + MLT1J LTR MaLR 2 403 -108 288 53 0 0 chr11 61588974 61589012 -87194460 + (TTG)n Simple_repeat Simple_repeat 2 39 0 294 315 70 59 chr11 61589099 61589369 -87194103 + HAL1 LINE L1 344 616 -1891 1798 153 103 103 chr11 61589548 61590044 -87193428 + MLT1D LTR MaLR 1 496 -9 2323 84 3 3 chr11 61590280 61590577 -87192895 - AluSp SINE Alu -16 297 1 3075 157 113 95 chr11 61591700 61592038 -87191434 - MER4D LTR ERV1 -7 896 566 1999 78 42 42 chr11 61592038 61592344 -87191128 + AluSx SINE Alu 7 312 0 3075 157 113 95 chr11 61592344 61592816 -87190656 - MER4D LTR ERV1 -337 566 71 251 209 104 0 chr11 61593093 61593160 -87190312 - MIR SINE MIR -94 168 95 1854 149 0 27 chr11 61593367 61593663 -87189809 + AluJb SINE Alu 6 293 -19 2396 89 0 3 chr11 61594579 61594881 -87188591 - AluY SINE Alu -10 301 1 236 248 40 99 chr11 61594934 61595035 -87188437 + MER5B DNA MER1_type 80 174 -4 3048 207 83 57 chr11 61595077 61595294 -87188178 - L1ME1 LINE L1 -5 6161 5951 4395 91 10 0 chr11 61595294 61595879 -87187593 - LTR10C LTR ERV1 0 591 1 1628 181 0 0 chr11 61595888 61596153 -87187319 + AluSx SINE Alu 32 296 -16 3048 207 83 57 chr11 61596153 61596477 -87186995 - L1ME1 LINE L1 -222 5944 5630 2373 102 0 0 chr11 61596477 61596780 -87186692 + AluSx SINE Alu 1 303 -9 3048 207 83 57 chr11 61596780 61596834 -87186638 - L1ME1 LINE L1 -536 5630 5579 2224 113 10 0 chr11 61596834 61597135 -87186337 + AluSg SINE Alu 1 304 -6 3048 207 83 57 chr11 61597135 61597299 -87186173 - L1ME1 LINE L1 -587 5579 5421 1760 129 121 4 chr11 61597299 61597579 -87185893 - AluSq SINE Alu 0 313 1 3048 207 83 57 chr11 61597579 61597983 -87185489 - L1ME1 LINE L1 -745 5421 5029 4387 102 59 4 chr11 61597983 61598666 -87184806 - L1MA3 LINE L1 0 6305 5586 3048 207 83 57 chr11 61598666 61598698 -87184774 - L1ME1 LINE L1 -1137 5029 4999 1942 114 0 0 chr11 61598698 61598952 -87184520 - AluSq SINE Alu -59 254 1 3048 207 83 57 chr11 61598952 61598974 -87184498 - L1ME1 LINE L1 -1167 4999 4898 616 224 64 26 chr11 61598977 61599133 -87184339 - MER21B LTR ERV1 -244 619 458 469 100 0 0 chr11 61599135 61599195 -87184277 - MER1B DNA MER1_type -2 331 272 1291 126 28 0 chr11 61599197 61599379 -87184093 - MER1B DNA MER1_type -109 188 2 252 122 0 0 chr11 61599379 61599419 -87184053 - MER21A LTR ERV1 -381 550 511 3378 209 32 23 chr11 61599418 61599835 -87183637 - MER21B LTR ERV1 -148 715 288 2792 142 66 40 chr11 61599835 61600071 -87183401 + LTR64 LTR ERVK 1 229 -329 2169 105 7 13 chr11 61600071 61600375 -87183097 + AluSx SINE Alu 1 302 -10 2792 142 66 40 chr11 61600375 61600682 -87182790 + LTR64 LTR ERVK 229 558 0 3378 209 32 23 chr11 61600682 61600952 -87182520 - MER21B LTR ERV1 -575 288 22 294 304 0 0 chr11 61600952 61601021 -87182451 - MER2 DNA MER2_type -9 336 268 1967 121 54 0 chr11 61601045 61601325 -87182147 + AluSx SINE Alu 1 295 -17 1082 169 0 23 chr11 61601445 61601570 -87181902 - MER2 DNA MER2_type -171 174 48 2675 174 116 50 chr11 61601570 61601807 -87181665 - LTR8A LTR ERV1 0 727 507 2417 77 3 0 chr11 61601807 61602106 -87181366 + AluSx SINE Alu 1 300 -12 2675 174 116 50 chr11 61602106 61602338 -87181134 - LTR8A LTR ERV1 -220 507 292 2460 87 0 6 chr11 61602338 61602650 -87180822 - AluSg SINE Alu 0 310 1 2675 174 116 50 chr11 61602650 61602861 -87180611 - LTR8A LTR ERV1 -435 292 1 1082 169 0 23 chr11 61602861 61602912 -87180560 - MER2 DNA MER2_type -297 48 2 1863 177 40 19 chr11 61602949 61603018 -87180454 - L1MD2 LINE L1 -368 5991 5925 4106 73 24 7 chr11 61603018 61603562 -87179910 - MER41A LTR ERV1 0 554 2 1863 177 40 19 chr11 61603562 61603864 -87179608 - L1MD2 LINE L1 -434 5925 5612 * 2858 164 40 61 chr11 61603861 61603897 -87179575 - L1MDa LINE L1 -3911 2629 2594 2292 117 0 0 chr11 61603897 61604196 -87179276 + AluSx SINE Alu 1 299 -13 2858 164 40 61 chr11 61604196 61604751 -87178721 - L1MDa LINE L1 -3946 2594 2029 2327 94 3 0 chr11 61604751 61605049 -87178423 + AluSq SINE Alu 1 299 -14 2858 164 40 61 chr11 61605049 61605090 -87178382 - L1MDa LINE L1 -4511 2029 1989 1596 154 15 11 chr11 61605090 61605357 -87178115 - AluJo SINE Alu -44 268 1 2858 164 40 61 chr11 61605357 61605428 -87178044 - L1MDa LINE L1 -4551 1989 1939 852 189 50 108 chr11 61605428 61605687 -87177785 + MLT1A2 LTR MaLR 1 244 -130 2204 113 7 0 chr11 61605688 61605981 -87177491 + AluSx SINE Alu 1 295 -17 3778 170 100 31 chr11 61606031 61606728 -87176744 - L1MDa LINE L1 -4597 1943 1161 1699 157 30 33 chr11 61606728 61607028 -87176444 - AluJo SINE Alu -13 299 1 3778 170 100 31 chr11 61607028 61607278 -87176194 - L1MDa LINE L1 -5379 1161 930 315 299 69 28 chr11 61607431 61607575 -87175897 - MIR SINE MIR -10 252 103 182 284 30 0 chr11 61607603 61607670 -87175802 - L2 LINE L2 -280 2992 2924 2518 162 101 14 chr11 61607688 61608193 -87175279 - MER44D DNA MER2_type 0 605 2 2028 91 102 0 chr11 61608325 61608599 -87174873 - AluSx SINE Alu -10 302 1 2260 104 3 0 chr11 61608611 61608909 -87174563 - AluY SINE Alu -12 299 1 6212 21 0 1 chr11 61609008 61609669 -87173803 - SVA Other Other -1 1385 726 1991 105 0 41 chr11 61610611 61610953 -87172519 - AluSx SINE Alu 0 330 1 362 255 13 54 chr11 61611309 61611458 -87172014 - MER5B DNA MER1_type -31 147 5 2432 88 0 3 chr11 61611478 61611786 -87171686 + AluSx SINE Alu 1 307 -5 4022 197 60 99 chr11 61611956 61612541 -87170931 + Zaphod DNA AcHobo 10 616 -3415 1200 154 130 24 chr11 61612541 61612612 -87170860 - MER33 DNA MER1_type -2261 324 262 1914 83 4 8 chr11 61612612 61612852 -87170620 + AluSq SINE Alu 56 294 -19 1200 154 130 24 chr11 61612852 61613073 -87170399 - MER33 DNA MER1_type -2323 262 1 4022 197 60 99 chr11 61613073 61613414 -87170058 + Zaphod DNA AcHobo 616 969 -3062 2326 101 13 0 chr11 61613414 61613722 -87169750 - AluSx SINE Alu 0 312 1 4022 197 60 99 chr11 61613722 61614177 -87169295 + Zaphod DNA AcHobo 969 1338 -2693 3281 208 75 59 chr11 61614189 61614584 -87168888 + Zaphod DNA AcHobo 1831 2218 -1813 1653 159 52 10 chr11 61614584 61614874 -87168598 - AluJo SINE Alu -10 302 1 2425 90 3 0 chr11 61614878 61615178 -87168294 - AluSg SINE Alu -9 301 1 3281 208 75 59 chr11 61615178 61615838 -87167634 + Zaphod DNA AcHobo 2220 2908 -1123 23 0 0 0 chr11 61615846 61615869 -87167603 + AT_rich Low_complexity Low_complexity 1 23 0 362 356 0 0 chr11 61616397 61616634 -87166838 + A-rich Low_complexity Low_complexity 1 237 0 22 0 0 0 chr11 61617518 61617540 -87165932 + AT_rich Low_complexity Low_complexity 1 22 0 202 83 0 42 chr11 61617577 61617625 -87165847 + (CAAAA)n Simple_repeat Simple_repeat 5 50 0 2321 69 0 50 chr11 61617708 61618011 -87165461 - AluY SINE Alu -23 288 1 2946 208 71 38 chr11 61618011 61618653 -87164819 + Zaphod DNA AcHobo 2953 3633 -398 2224 111 0 7 chr11 61618653 61618959 -87164513 + AluSx SINE Alu 1 304 -8 2946 208 71 38 chr11 61618959 61619201 -87164271 + Zaphod DNA AcHobo 3633 3866 -165 2640 155 85 82 chr11 61619207 61619579 -87163893 + L1MA9 LINE L1 5572 5941 -371 2297 101 7 0 chr11 61619579 61619875 -87163597 + AluSq SINE Alu 9 306 -7 2640 155 85 82 chr11 61619875 61620056 -87163416 + L1MA9 LINE L1 5941 6120 -192 2277 112 0 0 chr11 61620056 61620352 -87163120 + AluSx SINE Alu 1 296 -16 2126 125 0 7 chr11 61620352 61620640 -87162832 + AluSg1 SINE Alu 1 286 -23 2640 155 85 82 chr11 61620640 61620762 -87162710 + L1MA9 LINE L1 6120 6254 -58 1970 131 10 10 chr11 61620762 61621060 -87162412 + AluSx SINE Alu 1 298 -14 2640 155 85 82 chr11 61621060 61621076 -87162396 + L1MA9 LINE L1 6254 6268 -44 500 169 208 54 chr11 61621111 61621241 -87162231 + Zaphod DNA AcHobo 3882 4031 0 230 177 127 0 chr11 61621276 61621355 -87162117 - L1ME LINE L1 -706 5460 5372 657 206 0 44 chr11 61621458 61621594 -87161878 - FLAM_A SINE Alu -3 130 1 1037 98 0 0 chr11 61621707 61621839 -87161633 + AluSq/x SINE Alu 1 132 -181 2301 96 0 0 chr11 61621841 61622134 -87161338 + AluY SINE Alu 1 293 -18 2145 116 7 0 chr11 61622148 61622433 -87161039 + AluSp SINE Alu 1 287 -26 2365 102 0 0 chr11 61622446 61622749 -87160723 + AluSg SINE Alu 1 303 -7 25 0 0 0 chr11 61622749 61622774 -87160698 + AT_rich Low_complexity Low_complexity 1 25 0 253 114 0 0 chr11 61622776 61622811 -87160661 + AluS SINE Alu 51 85 -218 629 248 12 25 chr11 61622816 61622830 -87160642 - L1ME LINE L1 -437 5733 5720 1658 114 151 17 chr11 61622830 61623129 -87160343 + MER44D DNA MER2_type 1 609 0 629 248 12 25 chr11 61623129 61623275 -87160197 - L1ME LINE L1 -450 5720 5575 5679 147 23 15 chr11 61623275 61624236 -87159236 - LTR5 LTR ERVK 0 969 1 12370 73 3 1 chr11 61624239 61625784 -87157688 - HERVK LTR ERVK -5 7238 5691 189 171 0 0 chr11 61626042 61626077 -87157395 + (CAG)n Simple_repeat Simple_repeat 3 37 0 1065 119 0 25 chr11 61626217 61626377 -87157095 + SVA Other Other 1096 1251 -135 2579 49 0 7 chr11 61626455 61626760 -87156712 + AluY SINE Alu 1 303 -8 549 0 0 0 chr11 61630211 61630272 -87153200 + (TA)n Simple_repeat Simple_repeat 1 61 0 1445 134 5 15 chr11 61630333 61630590 -87152882 - HERVK LTR ERVK -1538 6533 5533 2357 81 30 0 chr11 61630618 61630914 -87152558 + AluSg SINE Alu 1 305 -5 38055 65 9 7 chr11 61631109 61635895 -87147577 - HERVK LTR ERVK -1711 5532 733 4963 115 18 20 chr11 61635959 61636718 -87146754 - HERVK LTR ERVK -6485 758 1 421 156 0 13 chr11 61636718 61636795 -87146677 - LTR5 LTR ERVK 0 969 894 1602 58 0 0 chr11 61636795 61636985 -87146487 + AluYb8 SINE Alu 1 190 -128 4898 137 44 42 chr11 61636985 61637880 -87145592 - LTR5 LTR ERVK -73 896 1 1391 209 42 34 chr11 61637886 61638110 -87145362 + Zaphod DNA AcHobo 3415 3636 -395 2780 29 0 0 chr11 61638110 61638421 -87145051 + AluYa5 SINE Alu 1 311 0 1391 209 42 34 chr11 61638421 61638441 -87145031 + Zaphod DNA AcHobo 3636 3654 -377 1942 118 38 7 chr11 61638441 61638730 -87144742 + AluSx SINE Alu 1 298 -14 1391 209 42 34 chr11 61638730 61638801 -87144671 + Zaphod DNA AcHobo 3654 3723 -308 423 98 0 0 chr11 61638801 61638862 -87144610 + (TG)n Simple_repeat Simple_repeat 2 62 0 1391 209 42 34 chr11 61638862 61638951 -87144521 + Zaphod DNA AcHobo 3723 3824 -207 564 100 0 0 chr11 61638951 61639031 -87144441 + AluY SINE Alu 216 295 -16 2098 126 0 17 chr11 61639033 61639327 -87144145 + AluSg1 SINE Alu 3 291 -18 422 149 48 137 chr11 61639322 61639442 -87144030 + L1MA9 LINE L1 6126 6231 -60 1968 133 10 10 chr11 61639442 61639736 -87143736 + AluSx SINE Alu 1 294 -18 422 149 48 137 chr11 61639736 61639769 -87143703 + L1MA9 LINE L1 6231 6265 -26 467 169 208 54 chr11 61639787 61639917 -87143555 + Zaphod DNA AcHobo 3882 4031 0 645 191 0 44 chr11 61640139 61640275 -87143197 - FLAM_A SINE Alu -3 130 1 1051 98 0 0 chr11 61640384 61640516 -87142956 + AluSq/x SINE Alu 1 132 -180 2329 96 0 0 chr11 61640518 61640811 -87142661 + AluY SINE Alu 1 293 -18 2181 125 7 0 chr11 61640825 61641121 -87142351 + AluSp SINE Alu 1 298 -15 2389 100 0 10 chr11 61641123 61641434 -87142038 + AluSg SINE Alu 1 308 -2 244 114 0 0 chr11 61641453 61641488 -87141984 + Alu SINE Alu 51 85 -218 612 248 12 25 chr11 61641493 61641507 -87141965 - L1ME LINE L1 -437 5733 5720 1550 124 151 17 chr11 61641507 61641806 -87141666 + MER44D DNA MER2_type 1 609 0 612 248 12 25 chr11 61641806 61641952 -87141520 - L1ME LINE L1 -450 5720 5575 5867 149 22 14 chr11 61641952 61642913 -87140559 - LTR5 LTR ERVK 0 969 1 11763 73 3 1 chr11 61642916 61644461 -87139011 - HERVK LTR ERVK -5 7238 5691 189 171 0 0 chr11 61644719 61644754 -87138718 + (CAG)n Simple_repeat Simple_repeat 3 37 0 1089 134 0 6 chr11 61644894 61645051 -87138421 + SVA Other Other 1096 1251 -135 2600 49 0 7 chr11 61645132 61645437 -87138035 + AluY SINE Alu 1 303 -8 531 0 0 0 chr11 61648888 61648947 -87134525 + (TA)n Simple_repeat Simple_repeat 1 59 0 2550 62 0 46 chr11 61650380 61650703 -87132769 - AluY SINE Alu -3 308 1 2742 216 66 40 chr11 61650704 61651345 -87132127 + Zaphod DNA AcHobo 2960 3632 -399 2260 111 0 7 chr11 61651345 61651651 -87131821 + AluSx SINE Alu 1 304 -8 2742 216 66 40 chr11 61651651 61651893 -87131579 + Zaphod DNA AcHobo 3632 3866 -165 2474 160 86 71 chr11 61651899 61652271 -87131201 + L1MA9 LINE L1 5572 5937 -375 2330 101 7 0 chr11 61652271 61652567 -87130905 + AluSq SINE Alu 9 306 -7 2474 160 86 71 chr11 61652567 61652748 -87130724 + L1MA9 LINE L1 5937 6114 -198 2307 112 0 0 chr11 61652748 61653044 -87130428 + AluSx SINE Alu 1 296 -16 2148 122 0 17 chr11 61653044 61653340 -87130132 + AluSg1 SINE Alu 1 291 -18 2474 160 86 71 chr11 61653340 61653454 -87130018 + L1MA9 LINE L1 6114 6254 -58 2003 131 10 10 chr11 61653454 61653752 -87129720 + AluSx SINE Alu 1 298 -14 2474 160 86 71 chr11 61653752 61653768 -87129704 + L1MA9 LINE L1 6254 6268 -44 467 169 208 54 chr11 61653803 61653933 -87129539 + Zaphod DNA AcHobo 3882 4031 0 325 306 82 33 chr11 61653967 61654150 -87129322 - L1ME LINE L1 -2347 5461 5270 645 191 0 44 chr11 61654155 61654291 -87129181 - FLAM_A SINE Alu -3 130 1 2129 122 10 0 chr11 61654403 61654698 -87128774 + AluSq SINE Alu 1 298 -15 2322 117 0 0 chr11 61654700 61655008 -87128464 + AluSg SINE Alu 1 308 -2 236 143 0 0 chr11 61655025 61655060 -87128412 + Alu SINE Alu 51 85 -218 885 254 35 18 chr11 61655065 61655079 -87128393 - L1ME LINE L1 -437 5733 5721 1400 106 111 143 chr11 61655079 61655429 -87128043 + MER44D DNA MER2_type 1 609 0 885 254 35 18 chr11 61655429 61655698 -87127774 - L1ME LINE L1 -449 5721 5445 2300 104 0 39 chr11 61655712 61656021 -87127451 - AluSx SINE Alu -15 297 1 704 267 148 51 chr11 61656022 61656130 -87127342 + L2 LINE L2 2688 2784 -529 433 276 15 15 chr11 61656130 61656264 -87127208 + MER94 DNA DNA 1 134 0 704 267 148 51 chr11 61656264 61656676 -87126796 + L2 LINE L2 2784 3279 -34 1596 179 51 12 chr11 61656740 61657075 -87126397 - MER7A DNA MER2_type 0 346 1 342 266 10 125 chr11 61657147 61657203 -87126269 + MER5A DNA MER1_type 19 80 -109 2314 111 0 10 chr11 61657203 61657510 -87125962 + AluSx SINE Alu 1 304 -8 342 266 10 125 chr11 61657510 61657645 -87125827 + MER5A DNA MER1_type 80 188 -1 242 188 158 40 chr11 61657645 61657735 -87125737 - MIR SINE MIR -107 155 54 701 169 0 0 chr11 61661295 61661419 -87122053 + AluJb SINE Alu 189 312 0 1317 179 5 5 chr11 61664187 61664410 -87119062 - AluSx SINE Alu -87 225 3 956 198 62 28 chr11 61664410 61664476 -87118996 + MER97b DNA MER1_type? 549 611 -442 1539 93 194 8 chr11 61664476 61664724 -87118748 + AluSg1 SINE Alu 1 294 -15 956 198 62 28 chr11 61664724 61664945 -87118527 + MER97b DNA MER1_type? 611 846 -207 2346 113 3 0 chr11 61664989 61665300 -87118172 - AluSp SINE Alu 0 313 2 1011 150 5 67 chr11 61665394 61665523 -87117949 + AluJo SINE Alu 1 116 -196 1612 91 0 5 chr11 61665523 61665731 -87117741 - AluSg/x SINE Alu -20 290 84 1011 150 5 67 chr11 61665731 61665794 -87117678 + AluJo SINE Alu 116 181 -131 2270 131 0 0 chr11 61665930 61666242 -87117230 + AluSx SINE Alu 1 312 0 2390 90 6 0 chr11 61666624 61666935 -87116537 - AluSp SINE Alu 0 313 1 31 26 0 0 chr11 61666967 61667005 -87116467 + AT_rich Low_complexity Low_complexity 1 38 0 328 277 8 67 chr11 61668329 61668448 -87115024 + L1MC/D LINE L1 5710 5821 -1987 1062 161 6 33 chr11 61668461 61668477 -87114995 + AluJo SINE Alu 120 135 -177 2348 112 0 6 chr11 61668477 61668790 -87114682 + AluSq SINE Alu 3 313 0 1062 161 6 33 chr11 61668790 61668953 -87114519 + AluJo SINE Alu 135 294 -18 2282 93 0 29 chr11 61668955 61669267 -87114205 + AluSx SINE Alu 1 303 -9 2147 131 0 10 chr11 61670615 61670920 -87112552 + AluSq SINE Alu 1 302 -11 2577 70 3 6 chr11 61671393 61671707 -87111765 - AluSp SINE Alu 0 313 1 2193 96 0 14 chr11 61672101 61672394 -87111078 - AluSq SINE Alu -4 309 21 2243 85 20 10 chr11 61672560 61672854 -87110618 - AluSc SINE Alu -12 297 1 371 306 32 13 chr11 61672875 61673032 -87110440 - L1MC4a LINE L1 -1910 5898 5739 260 316 21 0 chr11 61673335 61673430 -87110042 + L2 LINE L2 2349 2445 -869 288 240 183 0 chr11 61673455 61673559 -87109913 + L2 LINE L2 2712 2834 -480 2348 114 0 3 chr11 61673606 61673913 -87109559 - AluSq SINE Alu -7 306 1 257 27 54 0 chr11 61673914 61673951 -87109521 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 268 265 133 0 chr11 61673985 61674068 -87109404 + L2 LINE L2 3179 3272 0 233 315 62 57 chr11 61674074 61674456 -87109016 - L2 LINE L2 -245 3027 2622 263 304 110 13 chr11 61674494 61674731 -87108741 - L2 LINE L2 -1120 2194 1935 192 221 52 39 chr11 61674959 61675036 -87108436 + MIR SINE MIR 20 97 -111 209 339 0 0 chr11 61676128 61676187 -87107285 + GA-rich Low_complexity Low_complexity 1 59 0 1986 127 3 3 chr11 61676653 61676937 -87106535 - AluSc SINE Alu -3 306 23 2399 81 3 3 chr11 61677914 61678210 -87105262 - AluSc SINE Alu -11 298 3 483 191 0 56 chr11 61678210 61678336 -87105136 - LTR8A LTR ERV1 -505 222 104 997 114 0 7 chr11 61680324 61680473 -87102999 - MLT1B LTR MaLR -242 148 1 2412 87 16 7 chr11 61681715 61682024 -87101448 - AluSx SINE Alu 0 312 1 2484 77 0 3 chr11 61682983 61683282 -87100190 - AluSc SINE Alu -11 298 1 2327 98 7 0 chr11 61683339 61683634 -87099838 + AluSp SINE Alu 2 298 -15 200 108 0 27 chr11 61684574 61684611 -87098861 + (TCCCC)n Simple_repeat Simple_repeat 5 40 0 1308 149 20 143 chr11 61684837 61685179 -87098293 + AluYb8 SINE Alu 1 300 -8 397 269 42 8 chr11 61686199 61686318 -87097154 + MIR SINE MIR 140 262 0 274 307 29 21 chr11 61686611 61686753 -87096719 - MIR SINE MIR -65 143 12 237 331 181 8 chr11 61687088 61687215 -87096257 - MIR SINE MIR -65 197 49 211 305 99 40 chr11 61688708 61688859 -87094613 + L2 LINE L2 3012 3171 -101 1558 169 90 0 chr11 61689496 61689775 -87093697 + AluJo SINE Alu 1 304 -8 2124 143 0 13 chr11 61689775 61690090 -87093382 + AluJb SINE Alu 1 311 -1 620 246 111 13 chr11 61690421 61690629 -87092843 + MIR SINE MIR 8 228 -34 205 283 0 0 chr11 61690673 61690719 -87092753 - MIR SINE MIR -19 243 198 463 269 178 58 chr11 61690783 61691306 -87092166 - L2 LINE L2 -2 3311 2690 2513 62 0 0 chr11 61691306 61691620 -87091852 + AluY SINE Alu 1 314 0 463 269 178 58 chr11 61691620 61691662 -87091810 - L2 LINE L2 -623 2690 2654 254 363 44 6 chr11 61692067 61692227 -87091245 + MIR3 SINE MIR 16 181 -27 2281 107 0 19 chr11 61692371 61692688 -87090784 - AluSq SINE Alu -2 311 1 2009 133 3 10 chr11 61692991 61693291 -87090181 + AluJb SINE Alu 1 298 -14 475 220 17 0 chr11 61693291 61693400 -87090072 + MER97b DNA MER1_type? 244 357 -696 248 94 0 62 chr11 61693427 61693491 -87089981 - L1MA7 LINE L1 -1 6290 6231 1505 224 52 56 chr11 61693507 61693699 -87089773 + MER97b DNA MER1_type? 366 557 -496 2273 126 0 0 chr11 61693699 61694001 -87089471 - AluSx SINE Alu -8 304 3 1505 224 52 56 chr11 61694001 61694067 -87089405 + MER97b DNA MER1_type? 557 622 -431 1658 76 189 8 chr11 61694067 61694316 -87089156 + AluSg1 SINE Alu 1 294 -15 1505 224 52 56 chr11 61694316 61694539 -87088933 + MER97b DNA MER1_type? 622 846 -207 2346 113 3 0 chr11 61694583 61694894 -87088578 - AluSp SINE Alu 0 313 2 695 159 8 16 chr11 61694993 61695119 -87088353 + AluJo/FLAM SINE Alu 5 129 -183 2259 82 7 7 chr11 61695119 61695410 -87088062 - AluSg SINE Alu -19 291 1 222 226 32 16 chr11 61695410 61695472 -87088000 + MER5A DNA MER1_type 122 184 -5 378 294 59 0 chr11 61695481 61695617 -87087855 + MIR SINE MIR 67 210 -52 2251 110 0 3 chr11 61695950 61696241 -87087231 + AluSx SINE Alu 1 290 -22 1237 108 0 5 chr11 61696255 61696440 -87087032 + L1PA14 LINE L1 5805 5988 -173 585 89 20 0 chr11 61696440 61696541 -87086931 + HSMAR1 DNA Mariner 1 103 -1184 969 114 0 27 chr11 61696657 61696840 -87086632 + AluJb SINE Alu 149 312 0 860 256 17 17 chr11 61697736 61697966 -87085506 + MIR SINE MIR 8 237 -25 462 230 117 92 chr11 61697973 61698106 -87085366 - MIR SINE MIR 0 262 121 2139 85 50 0 chr11 61698106 61698389 -87085083 + AluSx SINE Alu 14 310 -2 462 230 117 92 chr11 61698389 61698451 -87085021 - MIR SINE MIR -141 121 62 870 213 0 0 chr11 61698528 61698692 -87084780 - FRAM SINE Alu -2 164 1 224 373 18 27 chr11 61698863 61698973 -87084499 + MIR SINE MIR 38 146 -62 1310 175 71 34 chr11 61699556 61699870 -87083602 + L1MC4 LINE L1 7217 7577 -264 2219 91 66 3 chr11 61699870 61700157 -87083315 + AluSq SINE Alu 1 305 -8 1310 175 71 34 chr11 61700157 61700226 -87083246 + L1MC4 LINE L1 7577 7642 -199 1106 97 0 7 chr11 61700245 61700389 -87083083 + AluSq SINE Alu 27 169 -144 2285 94 0 3 chr11 61700735 61701021 -87082451 - AluSg SINE Alu -24 286 2 2251 123 3 0 chr11 61701935 61702243 -87081229 + AluSx SINE Alu 1 309 -3 37 0 0 0 chr11 61702243 61702280 -87081192 + AT_rich Low_complexity Low_complexity 1 37 0 383 266 81 24 chr11 61702280 61702404 -87081068 - MIR SINE MIR -95 167 37 2406 92 0 13 chr11 61702739 61702768 -87080704 - AluSg SINE Alu 0 310 282 387 0 0 0 chr11 61702768 61702811 -87080661 + (CTTG)n Simple_repeat Simple_repeat 2 44 0 2406 92 0 13 chr11 61702811 61703095 -87080377 - AluSg SINE Alu -28 282 1 2396 99 3 0 chr11 61703856 61704159 -87079313 - AluSx SINE Alu -8 304 1 2390 81 3 3 chr11 61705263 61705560 -87077912 + AluSq SINE Alu 1 297 -16 2023 136 7 10 chr11 61705734 61706036 -87077436 + AluJo SINE Alu 1 301 -11 2189 71 3 59 chr11 61706292 61706615 -87076857 + AluSx SINE Alu 1 305 -7 22 0 0 0 chr11 61706615 61706637 -87076835 + AT_rich Low_complexity Low_complexity 1 22 0 2295 99 7 0 chr11 61706961 61707263 -87076209 - AluSx SINE Alu -8 304 1 2342 74 0 0 chr11 61707280 61707590 -87075882 - AluY SINE Alu 0 310 1 2408 89 7 0 chr11 61708451 61708753 -87074719 - AluSx SINE Alu -8 304 1 1086 84 0 0 chr11 61708758 61708889 -87074583 - AluSq/x SINE Alu -181 131 1 2395 91 3 0 chr11 61709547 61709843 -87073629 + AluSp SINE Alu 1 297 -16 3155 157 16 72 chr11 61710011 61710743 -87072729 - LTR8 LTR ERV1 0 691 1 1650 109 54 139 chr11 61710809 61711140 -87072332 + AluSx SINE Alu 1 303 -9 2150 131 0 10 chr11 61711357 61711669 -87071803 - AluJb SINE Alu -3 309 1 2185 187 34 30 chr11 61711748 61712246 -87071226 - MLT1D LTR MaLR -3 502 3 427 187 22 0 chr11 61712669 61712760 -87070712 - MER53 DNA DNA -91 98 6 1988 84 4 15 chr11 61713187 61713448 -87070024 - AluSc SINE Alu -11 298 41 2454 95 0 0 chr11 61713682 61713986 -87069486 + AluSp SINE Alu 1 304 -9 1929 113 16 68 chr11 61714255 61714564 -87068908 + AluSx SINE Alu 1 293 -19 203 313 0 45 chr11 61714594 61714661 -87068811 + G-rich Low_complexity Low_complexity 1 64 0 183 302 0 19 chr11 61714813 61714866 -87068606 + L2 LINE L2 3219 3270 -2 2189 116 3 19 chr11 61715937 61716247 -87067225 + AluSx SINE Alu 1 305 -7 2448 58 6 10 chr11 61716693 61717005 -87066467 - AluY SINE Alu 0 311 1 806 156 39 0 chr11 61717007 61717135 -87066337 - AluJo/FLAM SINE Alu -179 133 1 592 324 15 34 chr11 61717152 61717400 -87066072 - MIR SINE MIR -7 255 12 362 304 105 5 chr11 61717698 61717889 -87065583 + MIR SINE MIR 53 262 0 2557 53 0 10 chr11 61717947 61718247 -87065225 + AluY SINE Alu 1 297 -14 688 245 41 28 chr11 61718247 61718648 -87064824 - L1ME3 LINE L1 -13 6149 5657 2207 116 3 7 chr11 61718648 61718949 -87064523 - AluSx SINE Alu -12 300 1 688 245 41 28 chr11 61718949 61719178 -87064294 - L1ME3 LINE L1 -505 5657 5432 1005 168 68 0 chr11 61719196 61719357 -87064115 - FRAM SINE Alu -10 166 1 1120 208 30 52 chr11 61719365 61719464 -87064008 - L1ME3 LINE L1 -738 5426 5326 2265 111 13 0 chr11 61719464 61719770 -87063702 - AluSx SINE Alu -2 310 1 1120 208 30 52 chr11 61719770 61720062 -87063410 - L1ME3 LINE L1 -838 5326 5040 2450 69 0 10 chr11 61720380 61720683 -87062789 - AluY SINE Alu -9 302 3 2256 123 0 0 chr11 61720955 61721257 -87062215 - AluSx SINE Alu -10 302 1 343 214 29 0 chr11 61721306 61721376 -87062096 - MER20 DNA MER1_type 0 219 148 384 224 41 0 chr11 61721479 61721577 -87061895 - MIR3 SINE MIR -6 202 101 279 220 0 17 chr11 61722108 61722167 -87061305 - MIR SINE MIR -11 251 194 1692 156 3 36 chr11 61722173 61722293 -87061179 + AluJo SINE Alu 1 123 -189 2368 97 0 7 chr11 61722293 61722591 -87060881 - AluSx SINE Alu -16 296 1 1692 156 3 36 chr11 61722591 61722771 -87060701 + AluJo SINE Alu 123 291 -21 1840 173 7 0 chr11 61722792 61723087 -87060385 - AluSx SINE Alu -13 299 3 2287 93 3 0 chr11 61723095 61723385 -87060087 - AluSp SINE Alu -22 291 1 309 306 74 0 chr11 61724582 61724703 -87058769 - MIR SINE MIR -20 242 113 878 213 0 0 chr11 61725386 61725546 -87057926 + AluJb SINE Alu 137 296 -16 2063 129 30 7 chr11 61725550 61725853 -87057619 + AluSx SINE Alu 3 312 0 187 316 93 53 chr11 61726543 61726995 -87056477 + L2 LINE L2 1532 2001 -1313 1003 304 111 33 chr11 61727661 61728600 -87054872 - L2 LINE L2 -106 3207 2196 2293 105 3 0 chr11 61728601 61728905 -87054567 + AluY SINE Alu 1 305 -6 246 193 68 57 chr11 61729602 61729690 -87053782 + MIR SINE MIR 158 246 -16 221 274 0 0 chr11 61729724 61729775 -87053697 + L2 LINE L2 2700 2750 -564 761 154 0 0 chr11 61729776 61729893 -87053579 + AluJo/FLAM SINE Alu 1 117 -185 2135 121 0 55 chr11 61729893 61730150 -87053322 - AluSq SINE Alu 0 377 144 180 0 0 0 chr11 61730150 61730170 -87053302 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2135 121 0 55 chr11 61730170 61730307 -87053165 - AluSq SINE Alu -233 144 1 26 50 0 0 chr11 61730309 61730349 -87053123 + AT_rich Low_complexity Low_complexity 1 40 0 408 128 20 4 chr11 61730738 61730837 -87052635 + AluJ/FLAM SINE Alu 1 60 -242 631 156 0 9 chr11 61730896 61731005 -87052467 - AluSg/x SINE Alu -13 296 189 2320 110 3 0 chr11 61731270 61731571 -87051901 + AluSx SINE Alu 1 302 -10 1125 224 7 20 chr11 61731624 61731923 -87051549 - AluYa5 SINE Alu -2 299 5 2348 103 3 0 chr11 61733421 61733722 -87049750 + AluSx SINE Alu 1 302 -10 2301 79 7 20 chr11 61733775 61734078 -87049394 - AluY SINE Alu -12 299 1 396 271 186 27 chr11 61734140 61734361 -87049111 - MIR SINE MIR -1 261 6 2012 137 7 10 chr11 61734707 61734999 -87048473 + AluSx SINE Alu 1 291 -21 275 184 158 0 chr11 61735439 61735515 -87047957 - MIR SINE MIR -128 134 47 2273 80 45 0 chr11 61735806 61736095 -87047377 + AluSg SINE Alu 1 302 -8 2607 65 0 0 chr11 61736097 61736407 -87047065 + AluY SINE Alu 1 310 -1 228 197 61 15 chr11 61736656 61736722 -87046750 + GA-rich Low_complexity Low_complexity 6 74 0 2227 121 3 13 chr11 61736880 61737195 -87046277 - AluSq SINE Alu -1 312 1 2384 82 3 0 chr11 61737387 61737679 -87045793 + AluSp SINE Alu 1 293 -20 1225 153 12 121 chr11 61737682 61738021 -87045451 + AluSq SINE Alu 2 303 0 964 163 25 20 chr11 61738050 61738253 -87045219 + MLT1B LTR MaLR 187 390 0 528 221 123 13 chr11 61738347 61738501 -87044971 - MIR SINE MIR -44 218 48 1928 107 3 107 chr11 61738987 61739143 -87044329 + AluSx SINE Alu 5 109 -203 2062 108 37 14 chr11 61739143 61739439 -87044033 + AluSc SINE Alu 2 304 -5 1928 107 3 107 chr11 61739439 61739620 -87043852 + AluSx SINE Alu 109 307 -5 960 195 50 10 chr11 61739628 61739875 -87043597 + L1PA16 LINE L1 5873 6155 -8 2383 80 3 3 chr11 61739875 61740174 -87043298 - AluSg SINE Alu -11 299 1 693 133 9 9 chr11 61741701 61741806 -87041666 - AluSq/x SINE Alu -207 106 2 2238 102 0 13 chr11 61741807 61742121 -87041351 - AluY SINE Alu 0 311 2 1632 180 41 10 chr11 61742132 61742426 -87041046 - AluJo SINE Alu -9 303 1 755 280 139 15 chr11 61742429 61742454 -87041018 + L2 LINE L2 2692 2713 -600 2409 60 3 0 chr11 61742454 61742777 -87040695 + AluSp SINE Alu 1 324 0 755 280 139 15 chr11 61742777 61743113 -87040359 + L2 LINE L2 2713 3087 -226 189 0 0 0 chr11 61743135 61743156 -87040316 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 1754 158 10 41 chr11 61743158 61743449 -87040023 - AluJo SINE Alu -30 282 1 2167 92 26 29 chr11 61743483 61743789 -87039683 - AluSx SINE Alu -7 305 1 843 139 0 29 chr11 61743789 61743926 -87039546 - AluJo/FLAM SINE Alu -169 133 1 335 107 53 0 chr11 61744149 61744224 -87039248 + (TGAA)n Simple_repeat Simple_repeat 4 82 0 22 70 0 0 chr11 61744347 61744390 -87039082 + AT_rich Low_complexity Low_complexity 1 43 0 739 239 89 49 chr11 61744561 61744740 -87038732 - MIR SINE MIR 0 262 69 1681 169 0 72 chr11 61744740 61744885 -87038587 + AluJb SINE Alu 1 112 -200 2215 94 38 0 chr11 61744885 61745172 -87038300 + AluSq SINE Alu 2 299 -14 1681 169 0 72 chr11 61745172 61745346 -87038126 + AluJb SINE Alu 112 297 -15 739 239 89 49 chr11 61745346 61745413 -87038059 - MIR SINE MIR -193 69 6 2211 95 3 26 chr11 61745606 61745910 -87037562 + AluSc SINE Alu 1 297 -12 2214 142 0 0 chr11 61745922 61746231 -87037241 + AluSx SINE Alu 2 310 -2 2380 96 0 13 chr11 61746669 61746983 -87036489 + AluSg SINE Alu 1 310 0 467 114 25 0 chr11 61746983 61747062 -87036410 + GA-rich Low_complexity Low_complexity 4 84 0 2122 118 0 13 chr11 61747833 61748137 -87035335 + AluSx SINE Alu 1 300 -12 307 298 99 17 chr11 61748138 61748319 -87035153 + L1MC4a LINE L1 5727 5924 -240 1539 173 9 61 chr11 61748631 61748960 -87034512 + AluJo SINE Alu 1 312 0 634 146 146 0 chr11 61749070 61749180 -87034292 - L2 LINE L2 -1 3312 3187 2350 94 0 7 chr11 61749422 61749719 -87033753 + AluSx SINE Alu 2 296 -16 1392 154 111 47 chr11 61751091 61751370 -87032102 + AluJb SINE Alu 1 297 -15 2150 134 3 3 chr11 61751442 61751740 -87031732 + AluSc SINE Alu 2 299 -10 499 339 65 65 chr11 61752662 61753016 -87030456 - L2 LINE L2 -21 3251 2898 2304 92 23 0 chr11 61753462 61753766 -87029706 + AluSq SINE Alu 1 311 -2 2352 122 0 0 chr11 61754034 61754384 -87029088 + AluSx SINE Alu 1 350 0 1051 121 36 18 chr11 61755963 61756129 -87027343 + AluSg/x SINE Alu 122 290 -19 195 302 0 19 chr11 61756377 61756430 -87027042 + L2 LINE L2 3219 3270 -2 2144 118 3 20 chr11 61757501 61757806 -87025666 + AluSx SINE Alu 1 300 -12 2408 61 6 10 chr11 61758252 61758564 -87024908 - AluY SINE Alu 0 311 1 807 156 39 0 chr11 61758566 61758694 -87024778 - AluJo/FLAM SINE Alu -169 133 1 625 312 30 34 chr11 61758711 61758948 -87024524 - MIR SINE MIR -7 255 20 392 304 105 5 chr11 61759257 61759448 -87024024 + MIR SINE MIR 53 262 0 2335 85 0 25 chr11 61759505 61759822 -87023650 + AluSc SINE Alu 1 309 0 1913 147 32 0 chr11 61759832 61760117 -87023355 + AluJb SINE Alu 1 294 -18 2095 109 3 58 chr11 61762410 61762739 -87020733 - AluSx SINE Alu -1 311 1 229 250 120 46 chr11 61762759 61762867 -87020605 + MARNA DNA Mariner 457 572 -14 560 172 71 0 chr11 61762928 61763027 -87020445 - FLAM_A SINE Alu -26 116 11 2195 119 7 0 chr11 61763037 61763331 -87020141 - AluSx SINE Alu -16 296 1 428 253 116 46 chr11 61763332 61763716 -87019756 + LTR33 LTR ERVL 1 464 -57 593 132 11 11 chr11 61763807 61763898 -87019574 + AluJ/FLAM SINE Alu 2 92 -220 2160 89 7 24 chr11 61763998 61764291 -87019181 - AluSq SINE Alu -25 288 1 531 279 54 7 chr11 61764818 61764965 -87018507 + MER5A DNA MER1_type 7 160 -29 373 227 73 36 chr11 61765049 61765159 -87018313 + MER81 DNA DNA 1 114 0 357 319 74 6 chr11 61765492 61765655 -87017817 - MIR3 SINE MIR -1 207 34 327 216 47 23 chr11 61765734 61765861 -87017611 - MIR3 SINE MIR -7 201 72 1847 111 79 29 chr11 61765927 61766206 -87017266 + AluSx SINE Alu 1 293 -19 1216 123 0 0 chr11 61766717 61766887 -87016585 - AluSg/x SINE Alu -7 303 134 1580 181 78 0 chr11 61766888 61767169 -87016303 - AluSp SINE Alu -10 303 1 7983 89 21 26 chr11 61767169 61767414 -87016058 + HSMAR1 DNA Mariner 92 337 -950 1845 104 0 20 chr11 61767414 61767665 -87015807 + AluSx SINE Alu 45 290 -22 7983 89 21 26 chr11 61767665 61768616 -87014856 + HSMAR1 DNA Mariner 337 1282 -5 1144 95 6 18 chr11 61768616 61768785 -87014687 + L1PA14 LINE L1 5987 6153 -8 2312 59 18 3 chr11 61768793 61769079 -87014393 + AluSq SINE Alu 7 296 -17 374 261 170 7 chr11 61769119 61769272 -87014200 - L2 LINE L2 -225 3047 2870 1820 140 0 59 chr11 61769715 61770036 -87013436 + AluJo SINE Alu 2 303 -9 200 255 21 0 chr11 61770356 61770403 -87013069 - MIR SINE MIR -182 80 33 201 39 0 0 chr11 61770604 61770630 -87012842 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2075 103 7 11 chr11 61770631 61770912 -87012560 - AluSx SINE Alu -32 280 1 213 39 0 0 chr11 61771000 61771026 -87012446 + (TG)n Simple_repeat Simple_repeat 2 27 0 2333 84 0 3 chr11 61771116 61771412 -87012060 - AluSx SINE Alu -17 295 1 734 163 16 16 chr11 61771570 61771693 -87011779 + AluJo/FLAM SINE Alu 2 124 -188 2316 98 3 7 chr11 61771693 61771998 -87011474 - AluSx SINE Alu -8 304 1 265 311 249 9 chr11 61772468 61772922 -87010550 + L2 LINE L2 2231 2793 -521 2331 88 3 3 chr11 61773134 61773431 -87010041 + AluSq SINE Alu 1 297 -16 2016 136 7 10 chr11 61773605 61773907 -87009565 + AluJo SINE Alu 1 301 -11 2175 71 3 59 chr11 61774163 61774486 -87008986 + AluSx SINE Alu 1 305 -7 22 0 0 0 chr11 61774486 61774508 -87008964 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr11 61774832 61774852 -87008620 + (T)n Simple_repeat Simple_repeat 1 20 0 1100 204 35 56 chr11 61775232 61775524 -87007948 + L1ME2 LINE L1 5040 5326 -838 2292 113 10 0 chr11 61775524 61775833 -87007639 + AluSx SINE Alu 1 312 0 1100 204 35 56 chr11 61775833 61775932 -87007540 + L1ME2 LINE L1 5326 5426 -738 987 170 69 0 chr11 61775942 61776101 -87007371 + FRAM SINE Alu 1 166 -10 1429 252 168 30 chr11 61776119 61776348 -87007124 + L1ME2 LINE L1 5432 5628 -536 2198 116 3 7 chr11 61776348 61776649 -87006823 + AluSx SINE Alu 1 300 -12 1429 252 168 30 chr11 61776649 61777050 -87006422 + L1ME2 LINE L1 5628 6149 -15 2164 124 0 0 chr11 61777050 61777348 -87006124 - AluSq SINE Alu -15 298 1 2087 123 7 3 chr11 61777546 61777838 -87005634 - AluSx SINE Alu -15 297 5 181 354 31 0 chr11 61778259 61778324 -87005148 - L3b LINE CR1 -27 1556 1490 1962 182 65 118 chr11 61779173 61779323 -87004149 - L1MC4 LINE L1 -2 8040 7884 2102 139 0 7 chr11 61779323 61779624 -87003848 - AluSx SINE Alu -13 299 1 1962 182 65 118 chr11 61779624 61779742 -87003730 - L1MC4 LINE L1 -158 7884 7761 1993 79 60 11 chr11 61779742 61780040 -87003432 + AluSg SINE Alu 1 311 0 1962 182 65 118 chr11 61780040 61780151 -87003321 - L1MC4 LINE L1 -281 7761 7646 1921 128 0 4 chr11 61780151 61780424 -87003048 - AluSx SINE Alu -14 298 27 1962 182 65 118 chr11 61780424 61780512 -87002960 - L1MC4 LINE L1 -396 7646 7555 2212 91 66 3 chr11 61780512 61780799 -87002673 - AluSq SINE Alu -8 305 1 1962 182 65 118 chr11 61780799 61781113 -87002359 - L1MC4 LINE L1 -487 7555 7297 244 373 18 27 chr11 61781696 61781806 -87001666 - MIR SINE MIR -62 146 38 932 213 0 0 chr11 61781977 61782141 -87001331 + FRAM SINE Alu 1 164 -2 181 271 21 0 chr11 61782157 61782205 -87001267 - L2 LINE L2 -89 3224 3176 503 230 117 92 chr11 61782218 61782280 -87001192 + MIR SINE MIR 62 121 -141 2131 85 50 0 chr11 61782280 61782563 -87000909 - AluSx SINE Alu -2 310 14 503 230 117 92 chr11 61782563 61782696 -87000776 + MIR SINE MIR 121 262 0 917 256 17 17 chr11 61782703 61782933 -87000539 - MIR SINE MIR -25 237 8 1087 118 0 19 chr11 61783828 61784023 -86999449 - AluJb SINE Alu 0 312 136 2221 95 10 7 chr11 61784214 61784509 -86998963 - AluSx SINE Alu -14 298 3 1976 166 0 7 chr11 61784540 61784836 -86998636 - AluJb SINE Alu -18 294 1 219 36 0 0 chr11 61785266 61785294 -86998178 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2228 138 0 0 chr11 61785298 61785610 -86997862 + AluSx SINE Alu 1 312 0 1683 156 3 36 chr11 61785618 61785798 -86997674 - AluJo SINE Alu -21 291 123 2345 101 0 7 chr11 61785798 61786096 -86997376 + AluSx SINE Alu 1 296 -16 1683 156 3 36 chr11 61786096 61786216 -86997256 - AluJo SINE Alu -189 123 1 293 220 0 17 chr11 61786222 61786281 -86997191 + MIR SINE MIR 194 251 -11 409 224 41 0 chr11 61786812 61786910 -86996562 + MIR3 SINE MIR 101 202 -6 332 200 0 0 chr11 61787025 61787085 -86996387 + MER20 DNA MER1_type 160 219 0 2145 127 0 0 chr11 61787134 61787426 -86996046 + AluSx SINE Alu 1 292 -20 739 100 10 0 chr11 61787529 61787629 -86995843 - AluS SINE Alu -211 102 2 1550 117 0 9 chr11 61788636 61788859 -86994613 - AluSq SINE Alu -9 304 84 2401 95 0 0 chr11 61789041 61789335 -86994137 + AluSc SINE Alu 1 294 -15 321 160 97 4 chr11 61789398 61789510 -86993962 - L1MA9 LINE L1 -2 6289 6165 1838 139 4 15 chr11 61789510 61789784 -86993688 - AluJb SINE Alu -18 294 24 183 114 0 0 chr11 61789884 61789919 -86993553 + (A)n Simple_repeat Simple_repeat 1 35 0 2215 160 39 87 chr11 61789961 61790604 -86992868 + LTR6A LTR ERV1 4 564 0 195 222 0 0 chr11 61790612 61790657 -86992815 + (TA)n Simple_repeat Simple_repeat 1 45 0 2455 83 3 0 chr11 61790701 61791001 -86992471 - AluSg SINE Alu -9 301 1 1204 137 13 56 chr11 61791127 61791347 -86992125 + AluJb SINE Alu 86 297 -15 2331 68 3 35 chr11 61791347 61791658 -86991814 - AluY SINE Alu -10 301 1 1204 137 13 56 chr11 61791658 61791671 -86991801 + AluJb SINE Alu 297 309 -3 506 250 0 0 chr11 61791677 61791785 -86991687 + FLAM_A SINE Alu 18 125 -17 198 208 168 88 chr11 61791913 61792038 -86991434 - MIR SINE MIR -63 199 65 725 161 46 23 chr11 61792173 61792303 -86991169 - AluJb SINE Alu -22 290 158 2368 97 0 3 chr11 61792403 61792702 -86990770 + AluSx SINE Alu 1 298 -14 2258 109 10 7 chr11 61792703 61793007 -86990465 + AluSg SINE Alu 1 305 -5 277 276 46 0 chr11 61807249 61807336 -86976136 - MIR SINE MIR -68 194 104 922 103 8 0 chr11 61807344 61807461 -86976011 + AluSp SINE Alu 1 118 -195 216 287 28 37 chr11 61807981 61808089 -86975383 + CT-rich Low_complexity Low_complexity 1 107 0 347 167 14 14 chr11 61808245 61808269 -86975203 - MER46A DNA MER2_type -68 168 145 1177 92 63 0 chr11 61808269 61808443 -86975029 + MER46B DNA MER2_type 1 60 -176 1242 82 0 0 chr11 61808443 61808589 -86974883 + AluSq/x SINE Alu 1 146 -166 268 157 62 0 chr11 61808590 61808647 -86974825 - MER20 DNA MER1_type -101 118 56 436 236 0 0 chr11 61808655 61808744 -86974728 + MER20 DNA MER1_type 131 219 0 2281 73 9 44 chr11 61809288 61809461 -86974011 - AluSc SINE Alu -4 305 146 2449 96 0 0 chr11 61809461 61809754 -86973718 - AluSg SINE Alu -17 293 1 2281 73 9 44 chr11 61809754 61809896 -86973576 - AluSc SINE Alu -163 146 1 1928 148 0 11 chr11 61810159 61810460 -86973012 + AluSx SINE Alu 8 305 0 2079 153 0 0 chr11 61810498 61810798 -86972674 + AluSx SINE Alu 1 300 -12 350 167 241 9 chr11 61810815 61810923 -86972549 + FLAM_C SINE Alu 1 133 0 1058 164 0 0 chr11 61810929 61811106 -86972366 - LTR54 LTR ERV1 -41 469 293 654 138 0 35 chr11 61811113 61811229 -86972243 - 7SLRNA srpRNA srpRNA -4 316 205 1407 120 62 0 chr11 61811231 61811456 -86972016 - LTR54 LTR ERV1 -271 239 1 2148 125 7 7 chr11 61811549 61811852 -86971620 - AluSx SINE Alu -9 303 1 216 382 22 22 chr11 61811879 61812015 -86971457 + L2 LINE L2 3177 3312 -1 2382 97 0 0 chr11 61812216 61812515 -86970957 - AluSx SINE Alu -13 299 1 1042 165 0 57 chr11 61812680 61812874 -86970598 - AluJb SINE Alu -5 307 125 221 291 233 0 chr11 61813136 61813239 -86970233 - L2 LINE L2 -1 3312 3186 868 287 16 53 chr11 61813272 61813575 -86969897 - L2 LINE L2 -783 2531 2240 2306 110 0 0 chr11 61813586 61813878 -86969594 - AluSx SINE Alu -20 292 1 1504 202 59 86 chr11 61813903 61814256 -86969216 - MLT1C LTR MaLR 0 467 129 2408 99 0 0 chr11 61814256 61814582 -86968890 - AluSg SINE Alu 0 310 2 1504 202 59 86 chr11 61814582 61814703 -86968769 - MLT1C LTR MaLR -338 129 6 590 239 101 36 chr11 61814709 61814956 -86968516 - L2 LINE L2 -1081 2233 1971 295 342 26 8 chr11 61814927 61815044 -86968428 + MER5C DNA MER1_type 5 123 -201 * 1067 170 0 0 chr11 61815069 61815234 -86968238 - AluJb SINE Alu -14 298 134 2391 95 3 0 chr11 61815234 61815530 -86967942 - AluSx SINE Alu -15 297 1 698 176 0 0 chr11 61815560 61815679 -86967793 + FLAM_C SINE Alu 2 120 -23 464 214 0 0 chr11 61815719 61815817 -86967655 + AluJb SINE Alu 131 228 -84 2344 93 0 19 chr11 61815852 61816162 -86967310 + AluSg SINE Alu 4 307 -3 182 114 0 23 chr11 61816166 61816210 -86967262 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 334 203 0 0 chr11 61816224 61816283 -86967189 - MER81 DNA DNA -54 60 2 518 303 27 61 chr11 61816317 61816611 -86966861 - L2 LINE L2 -1840 1474 1191 2411 71 24 0 chr11 61816779 61817074 -86966398 - AluSx SINE Alu -10 302 1 2386 87 10 3 chr11 61818078 61818376 -86965096 - AluSg SINE Alu -10 300 1 222 226 32 16 chr11 61818376 61818438 -86965034 + MER5A DNA MER1_type 122 184 -5 378 294 59 0 chr11 61818447 61818583 -86964889 + MIR SINE MIR 67 210 -52 2251 110 0 3 chr11 61818916 61819207 -86964265 + AluSx SINE Alu 1 290 -22 1284 103 0 0 chr11 61819221 61819405 -86964067 + L1PA14 LINE L1 5805 5988 -173 8600 86 21 28 chr11 61819405 61819498 -86963974 + HSMAR1 DNA Mariner 1 93 -1194 2378 108 0 0 chr11 61819498 61819804 -86963668 - AluSx SINE Alu -6 306 1 8600 86 21 28 chr11 61819804 61820049 -86963423 + HSMAR1 DNA Mariner 93 338 -949 1852 104 0 20 chr11 61820049 61820300 -86963172 + AluSx SINE Alu 45 290 -22 8600 86 21 28 chr11 61820300 61821251 -86962221 + HSMAR1 DNA Mariner 338 1282 -5 1067 101 6 18 chr11 61821251 61821420 -86962052 + L1PA14 LINE L1 5987 6153 -8 2316 59 17 3 chr11 61821428 61821715 -86961757 + AluSq SINE Alu 7 297 -16 321 281 163 0 chr11 61821754 61821907 -86961565 - L2 LINE L2 -225 3047 2870 1829 148 0 58 chr11 61822350 61822680 -86960792 + AluJo SINE Alu 2 312 0 1249 152 0 0 chr11 61822765 61822943 -86960529 - AluSg/x SINE Alu -4 306 129 2405 109 3 0 chr11 61823053 61823365 -86960107 - AluSp SINE Alu 0 313 1 2421 100 0 3 chr11 61824277 61824587 -86958885 + AluSg SINE Alu 2 310 0 216 0 0 0 chr11 61824700 61824724 -86958748 + (A)n Simple_repeat Simple_repeat 1 24 0 2321 117 0 9 chr11 61824973 61825289 -86958183 - AluSq SINE Alu 0 313 1 2006 72 41 72 chr11 61825443 61825768 -86957704 - AluY SINE Alu 0 316 1 200 200 0 0 chr11 61825976 61826021 -86957451 + L2 LINE L2 3004 3048 -224 2218 113 7 0 chr11 61826036 61826328 -86957144 + AluSx SINE Alu 1 294 -18 782 232 40 18 chr11 61826330 61826554 -86956918 + MIR SINE MIR 12 240 -22 2580 39 13 16 chr11 61827349 61827481 -86955991 + AluY SINE Alu 1 132 -179 2560 68 0 3 chr11 61827481 61827792 -86955680 + AluY SINE Alu 1 310 -1 2580 39 13 16 chr11 61827792 61827966 -86955506 + AluY SINE Alu 132 306 -5 1742 158 14 45 chr11 61828000 61828314 -86955158 + AluJo SINE Alu 1 305 0 685 282 89 33 chr11 61828336 61828671 -86954801 - L2 LINE L2 -226 3087 2714 2427 60 3 0 chr11 61828671 61828994 -86954478 - AluSp SINE Alu 0 324 1 685 282 89 33 chr11 61828994 61829019 -86954453 - L2 LINE L2 -599 2714 2692 1643 180 41 10 chr11 61829022 61829316 -86954156 + AluJo SINE Alu 1 303 -9 2468 88 0 0 chr11 61829327 61829634 -86953838 + AluY SINE Alu 2 308 -3 2112 131 0 16 chr11 61829639 61829945 -86953527 + AluSx SINE Alu 1 301 -11 738 185 84 9 chr11 61829956 61830098 -86953374 + L1MB3 LINE L1 5815 5918 -265 2350 86 6 26 chr11 61830098 61830411 -86953061 + AluSp SINE Alu 1 307 -6 738 185 84 9 chr11 61830411 61830465 -86953007 + L1MB3 LINE L1 5918 5967 -216 993 162 84 0 chr11 61830466 61830657 -86952815 + L1MB3 LINE L1 5966 6172 -11 651 289 138 0 chr11 61831067 61831292 -86952180 - MIR SINE MIR -1 261 6 659 75 123 0 chr11 61831416 61831522 -86951950 - AluSg/x SINE Alu -18 294 176 185 184 0 82 chr11 61832024 61832073 -86951399 + L2 LINE L2 3223 3267 -5 2122 110 10 42 chr11 61832303 61832612 -86950860 - AluSq SINE Alu -14 299 1 397 314 101 49 chr11 61832816 61832859 -86950613 - L2 LINE L2 -337 2977 2938 2288 111 0 7 chr11 61832859 61833157 -86950315 + AluSg SINE Alu 1 296 -14 397 314 101 49 chr11 61833157 61833479 -86949993 - L2 LINE L2 -376 2938 2593 2438 78 3 7 chr11 61834092 61834401 -86949071 - AluSg SINE Alu -2 308 1 330 231 175 50 chr11 61834598 61834673 -86948799 - Charlie8 DNA MER1_type -127 203 139 2273 124 3 6 chr11 61834673 61834987 -86948485 - AluSq SINE Alu 0 313 1 330 231 175 50 chr11 61834987 61835071 -86948401 - Charlie8 DNA MER1_type -191 139 24 1942 140 0 30 chr11 61836487 61836787 -86946685 + AluJb SINE Alu 1 291 -21 2319 112 0 6 chr11 61836902 61837214 -86946258 - AluSx SINE Alu -2 310 1 2195 96 26 29 chr11 61837221 61837534 -86945938 - AluSx SINE Alu 0 312 1 788 139 0 29 chr11 61837534 61837671 -86945801 - AluJo/FLAM SINE Alu -169 133 1 335 107 53 0 chr11 61837894 61837969 -86945503 + (TGAA)n Simple_repeat Simple_repeat 4 82 0 22 70 0 0 chr11 61838092 61838135 -86945337 + AT_rich Low_complexity Low_complexity 1 43 0 685 239 89 49 chr11 61838306 61838485 -86944987 - MIR SINE MIR 0 262 69 1689 169 0 72 chr11 61838485 61838630 -86944842 + AluJb SINE Alu 1 112 -200 2219 94 38 0 chr11 61838630 61838917 -86944555 + AluSq SINE Alu 2 299 -14 1689 169 0 72 chr11 61838917 61839091 -86944381 + AluJb SINE Alu 112 297 -15 685 239 89 49 chr11 61839091 61839158 -86944314 - MIR SINE MIR -193 69 6 2254 98 0 26 chr11 61839351 61839656 -86943816 + AluSc SINE Alu 1 297 -12 2217 142 0 0 chr11 61839668 61839977 -86943495 + AluSx SINE Alu 2 310 -2 2396 96 0 13 chr11 61840415 61840729 -86942743 + AluSg SINE Alu 1 310 0 467 114 25 0 chr11 61840729 61840808 -86942664 + GA-rich Low_complexity Low_complexity 4 84 0 2135 118 0 13 chr11 61841579 61841883 -86941589 + AluSx SINE Alu 1 300 -12 320 298 99 17 chr11 61841884 61842065 -86941407 + L1MC4a LINE L1 5727 5924 -240 1535 173 9 61 chr11 61842377 61842706 -86940766 + AluJo SINE Alu 1 312 0 596 146 146 0 chr11 61842816 61842926 -86940546 - L2 LINE L2 -1 3312 3187 2221 94 0 7 chr11 61843168 61843465 -86940007 + AluSx SINE Alu 2 296 -16 1302 151 111 47 chr11 61844837 61845116 -86938356 + AluJb SINE Alu 1 297 -15 2040 131 3 3 chr11 61845188 61845486 -86937986 + AluSc SINE Alu 2 299 -10 475 340 65 62 chr11 61846408 61846761 -86936711 - L2 LINE L2 -21 3251 2898 2189 89 23 0 chr11 61847207 61847511 -86935961 + AluSq SINE Alu 1 311 -2 2231 122 0 0 chr11 61847779 61848129 -86935343 + AluSx SINE Alu 1 350 0 1437 110 44 116 chr11 61849806 61850158 -86933314 + AluJo SINE Alu 1 312 0 869 252 17 17 chr11 61851051 61851281 -86932191 + MIR SINE MIR 8 237 -25 459 230 117 92 chr11 61851288 61851421 -86932051 - MIR SINE MIR 0 262 121 2012 85 50 0 chr11 61851421 61851704 -86931768 + AluSx SINE Alu 14 310 -2 459 230 117 92 chr11 61851704 61851766 -86931706 - MIR SINE MIR -141 121 62 862 174 0 0 chr11 61851843 61851987 -86931485 - FRAM SINE Alu -12 164 21 232 373 18 27 chr11 61852178 61852288 -86931184 + MIR SINE MIR 38 146 -62 1266 177 84 34 chr11 61852871 61853185 -86930287 + L1MC4 LINE L1 7217 7582 -259 2081 96 65 3 chr11 61853185 61853476 -86929996 + AluSq SINE Alu 1 309 -4 1266 177 84 34 chr11 61853476 61853541 -86929931 + L1MC4 LINE L1 7582 7642 -199 1885 138 0 0 chr11 61853560 61853835 -86929637 + AluSx SINE Alu 27 301 -11 441 217 43 36 chr11 61853847 61853985 -86929487 + L1MC4 LINE L1 7902 8040 -2 225 247 186 0 chr11 61854210 61854307 -86929165 + MARNA DNA Mariner 186 300 -286 2161 115 3 10 chr11 61854314 61854628 -86928844 - AluSx SINE Alu 0 312 1 289 231 102 46 chr11 61854647 61854755 -86928717 - MARNA DNA Mariner -458 128 15 553 172 71 0 chr11 61854816 61854915 -86928557 - FLAM_A SINE Alu -26 116 11 2062 119 7 0 chr11 61854925 61855219 -86928253 - AluSx SINE Alu -16 296 1 563 286 92 29 chr11 61855220 61855658 -86927814 + LTR33 LTR ERVL 1 519 -2 1097 99 0 7 chr11 61855694 61855845 -86927627 + AluJb SINE Alu 1 150 -162 516 237 0 0 chr11 61855845 61855942 -86927530 + AluSg/x SINE Alu 197 293 -16 518 132 0 11 chr11 61855942 61856033 -86927439 + (GGGA)n Simple_repeat Simple_repeat 1 90 0 2189 103 7 0 chr11 61856327 61856629 -86926843 + AluSq SINE Alu 1 304 -9 22 35 0 0 chr11 61857162 61857191 -86926281 + AT_rich Low_complexity Low_complexity 1 29 0 262 260 110 0 chr11 61857715 61857788 -86925684 - MIR SINE MIR -91 171 91 2002 88 8 0 chr11 61858309 61858572 -86924900 + AluSq SINE Alu 1 265 -48 340 266 30 102 chr11 61878345 61878440 -86905032 - MIR SINE MIR -63 145 114 2162 108 3 0 chr11 61878440 61878736 -86904736 + AluSp SINE Alu 1 297 -16 340 266 30 102 chr11 61878736 61878804 -86904668 - MIR SINE MIR -94 114 43 521 221 29 11 chr11 61879804 61879939 -86903533 + MIR SINE MIR 16 152 -61 218 300 134 17 chr11 61879991 61880016 -86903456 - MIR SINE MIR -34 228 207 2391 63 3 22 chr11 61880016 61880333 -86903139 - AluY SINE Alu 0 311 1 1721 136 61 0 chr11 61880333 61880612 -86902860 - AluJb SINE Alu -15 297 2 218 300 134 17 chr11 61880612 61880760 -86902712 - MIR SINE MIR -54 208 36 2201 82 3 3 chr11 61880760 61881054 -86902418 - AluSg SINE Alu -16 294 1 896 199 40 0 chr11 61883283 61883459 -86900013 - MER3 DNA MER1_type -26 183 1 834 160 0 0 chr11 61883601 61883732 -86899740 + FLAM_C SINE Alu 1 131 -12 21 0 0 0 chr11 61883734 61883755 -86899717 + AT_rich Low_complexity Low_complexity 1 21 0 325 318 104 38 chr11 61884705 61884916 -86898556 - MIR SINE MIR -20 242 18 186 103 0 0 chr11 61885200 61885229 -86898243 + (CA)n Simple_repeat Simple_repeat 1 29 0 223 214 36 12 chr11 61889920 61890004 -86893468 + (CGGGG)n Simple_repeat Simple_repeat 3 88 0 2153 112 3 0 chr11 61891461 61891765 -86891707 + AluSx SINE Alu 1 305 -7 1013 82 0 8 chr11 61892346 61892480 -86890992 + AluSc SINE Alu 1 133 -176 2022 80 4 0 chr11 61892480 61892742 -86890730 + AluSx SINE Alu 33 295 -17 1838 106 7 11 chr11 61892971 61893284 -86890188 - AluSx SINE Alu 0 323 12 259 260 260 0 chr11 61893298 61893421 -86890051 - MIR SINE MIR -55 207 53 309 235 7 141 chr11 61893422 61893505 -86889967 + L2 LINE L2 3185 3241 -72 2058 139 6 22 chr11 61893505 61893821 -86889651 - AluJb SINE Alu -1 311 1 309 235 7 141 chr11 61893821 61893886 -86889586 + L2 LINE L2 3241 3313 0 2377 92 0 32 chr11 61894278 61894297 -86889175 - AluSg SINE Alu -4 306 288 180 0 0 0 chr11 61894297 61894317 -86889155 + (TGG)n Simple_repeat Simple_repeat 3 22 0 2377 92 0 32 chr11 61894317 61894613 -86888859 - AluSg SINE Alu -22 288 1 231 213 0 0 chr11 61894940 61894987 -86888485 + (TG)n Simple_repeat Simple_repeat 2 48 0 2396 90 3 0 chr11 61895310 61895611 -86887861 + AluSq SINE Alu 1 302 -11 361 245 38 28 chr11 61896994 61897100 -86886372 + MIR3 SINE MIR 89 195 -13 2191 112 3 16 chr11 61898215 61898519 -86884953 + AluSx SINE Alu 1 300 -12 293 202 101 50 chr11 61900185 61900284 -86883188 - FAM SINE Alu -67 108 5 2226 91 17 20 chr11 61900893 61901191 -86882281 + AluSq SINE Alu 3 299 -14 749 177 0 77 chr11 61901206 61901298 -86882174 + FAM SINE Alu 5 78 -233 2244 51 43 7 chr11 61901298 61901574 -86881898 + AluY SINE Alu 11 296 -15 749 177 0 77 chr11 61901574 61901662 -86881810 + FAM SINE Alu 78 171 -4 27 0 0 0 chr11 61901692 61901719 -86881753 + AT_rich Low_complexity Low_complexity 1 27 0 202 293 40 20 chr11 61901729 61901828 -86881644 + MIR SINE MIR 48 148 -114 1695 173 16 50 chr11 61901941 61902264 -86881208 + AluJb SINE Alu 1 312 0 1848 104 100 4 chr11 61904197 61904466 -86879006 + AluSx SINE Alu 1 295 -17 1978 121 37 0 chr11 61904466 61904764 -86878708 + AluSc SINE Alu 1 309 0 2261 161 39 86 chr11 61904811 61905454 -86878018 + LTR6A LTR ERV1 4 564 0 195 222 0 0 chr11 61905462 61905507 -86877965 + (TA)n Simple_repeat Simple_repeat 1 45 0 2389 74 0 32 chr11 61905551 61905863 -86877609 - AluY SINE Alu -9 302 1 469 250 0 0 chr11 61905882 61905990 -86877482 + FLAM_A SINE Alu 18 125 -17 670 157 52 0 chr11 61906378 61906493 -86876979 - AluJb SINE Alu -22 290 170 2376 97 0 3 chr11 61906608 61906908 -86876564 + AluSx SINE Alu 1 299 -13 2314 102 10 3 chr11 61906908 61907212 -86876260 + AluSg SINE Alu 1 306 -4 2281 98 0 25 chr11 61907215 61907532 -86875940 + AluSc SINE Alu 1 309 0 1915 147 32 0 chr11 61907542 61907827 -86875645 + AluJb SINE Alu 1 294 -18 1835 129 0 60 chr11 61910120 61910422 -86873050 - AluJo SINE Alu -1 311 28 2019 61 8 0 chr11 61910424 61910670 -86872802 + AluY SINE Alu 47 294 -17 1387 99 0 0 chr11 61910670 61910842 -86872630 + AluSg/x SINE Alu 132 303 -7 718 165 16 0 chr11 61910842 61910963 -86872509 - AluJo/FLAM SINE Alu -188 124 2 2349 84 0 3 chr11 61911121 61911417 -86872055 + AluSx SINE Alu 1 295 -17 213 39 0 0 chr11 61911507 61911533 -86871939 + (CA)n Simple_repeat Simple_repeat 2 27 0 2091 103 7 11 chr11 61911621 61911902 -86871570 + AluSx SINE Alu 1 280 -32 201 39 0 0 chr11 61911903 61911929 -86871543 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 183 255 21 0 chr11 61912130 61912177 -86871295 + MIR SINE MIR 33 80 -182 2235 114 0 0 chr11 61912494 61912792 -86870680 - AluSq SINE Alu -15 298 1 2101 123 7 3 chr11 61912990 61913282 -86870190 - AluSx SINE Alu -15 297 5 300 188 0 0 chr11 61914825 61914889 -86868583 + L1MD1 LINE L1 6164 6227 -15 498 254 0 8 chr11 61918881 61918999 -86864473 + MIR SINE MIR 67 183 -79 241 221 44 0 chr11 61919880 61919948 -86863524 - MER103 DNA DNA -8 158 88 442 158 0 0 chr11 61919958 61920034 -86863438 + AluJ/FRAM SINE Alu 226 301 -11 250 265 0 29 chr11 61920057 61920125 -86863347 + GA-rich Low_complexity Low_complexity 3 68 0 2376 88 3 0 chr11 61920214 61920511 -86862961 + AluSq SINE Alu 5 302 -11 2163 101 14 0 chr11 61920693 61920979 -86862493 + AluSp SINE Alu 6 295 -18 281 182 0 0 chr11 61921540 61921595 -86861877 - MIR SINE MIR -40 222 168 551 220 201 75 chr11 61921620 61921993 -86861479 + L1MC4 LINE L1 7530 7949 -93 444 161 74 0 chr11 61922006 61922087 -86861385 + L1MC1 LINE L1 6239 6325 -8 2314 81 3 29 chr11 61922087 61922396 -86861076 - AluSx SINE Alu -11 301 1 348 216 72 10 chr11 61922450 61922547 -86860925 - MIR SINE MIR -82 180 78 2309 131 0 0 chr11 61922780 61923117 -86860355 - AluSx SINE Alu 0 337 1 2325 89 23 0 chr11 61923385 61923689 -86859783 - AluSq SINE Alu -2 311 1 444 343 65 62 chr11 61924135 61924488 -86858984 + L2 LINE L2 2898 3251 -21 2156 134 3 3 chr11 61925410 61925708 -86857764 - AluSc SINE Alu -10 299 2 1413 151 111 47 chr11 61925780 61926059 -86857413 - AluJb SINE Alu -15 297 1 2361 94 0 7 chr11 61927431 61927728 -86855744 - AluSx SINE Alu -16 296 2 596 146 146 0 chr11 61927970 61928080 -86855392 + L2 LINE L2 3187 3312 -1 1535 173 9 61 chr11 61928190 61928519 -86854953 - AluJo SINE Alu 0 312 1 320 298 99 17 chr11 61928831 61929012 -86854460 - L1MC4a LINE L1 -240 5924 5727 2256 87 3 10 chr11 61929013 61929313 -86854159 - AluSg SINE Alu -12 298 1 330 231 175 50 chr11 61929510 61929585 -86853887 - Charlie8 DNA MER1_type -2214 203 139 2273 124 3 6 chr11 61929585 61929899 -86853573 - AluSq SINE Alu 0 313 1 330 231 175 50 chr11 61929899 61929983 -86853489 - Charlie8 DNA MER1_type -2278 139 24 1942 140 0 30 chr11 61931399 61931699 -86851773 + AluJb SINE Alu 1 291 -21 28 0 0 0 chr11 61931778 61931806 -86851666 + AT_rich Low_complexity Low_complexity 1 28 0 2375 105 0 6 chr11 61931812 61932126 -86851346 - AluSx SINE Alu 0 312 1 2235 89 26 29 chr11 61932134 61932447 -86851025 - AluSx SINE Alu 0 312 1 788 139 0 29 chr11 61932447 61932584 -86850888 - AluJo/FLAM SINE Alu -169 133 1 335 107 53 0 chr11 61932807 61932882 -86850590 + (TGAA)n Simple_repeat Simple_repeat 4 82 0 22 70 0 0 chr11 61933005 61933048 -86850424 + AT_rich Low_complexity Low_complexity 1 43 0 685 239 89 49 chr11 61933219 61933398 -86850074 - MIR SINE MIR 0 262 69 1689 169 0 72 chr11 61933398 61933543 -86849929 + AluJb SINE Alu 1 112 -200 2219 94 38 0 chr11 61933543 61933830 -86849642 + AluSq SINE Alu 2 299 -14 1689 169 0 72 chr11 61933830 61934004 -86849468 + AluJb SINE Alu 112 297 -15 685 239 89 49 chr11 61934004 61934071 -86849401 - MIR SINE MIR -193 69 6 2219 98 0 29 chr11 61934264 61934570 -86848902 + AluSc SINE Alu 1 297 -12 2148 146 3 0 chr11 61934582 61934890 -86848582 + AluSx SINE Alu 2 310 -2 2396 96 0 13 chr11 61935328 61935642 -86847830 + AluSg SINE Alu 1 310 0 467 114 25 0 chr11 61935642 61935721 -86847751 + GA-rich Low_complexity Low_complexity 4 84 0 412 119 0 0 chr11 61936493 61936552 -86846920 + AluS SINE Alu 2 60 -252 1062 101 20 7 chr11 61936653 61936801 -86846671 - AluJb SINE Alu -162 150 1 521 286 92 29 chr11 61936837 61937275 -86846197 - LTR33 LTR ERVL -2 519 1 2193 119 7 0 chr11 61937276 61937570 -86845902 + AluSx SINE Alu 1 296 -16 517 172 71 0 chr11 61937580 61937679 -86845793 + FLAM_A SINE Alu 11 116 -26 287 231 102 46 chr11 61937740 61937848 -86845624 + MARNA DNA Mariner 15 128 -458 2149 123 3 16 chr11 61937867 61938183 -86845289 + AluSx SINE Alu 1 312 0 682 184 71 131 chr11 61938512 61938662 -86844810 - L1MC4 LINE L1 -2 8040 7911 2213 136 0 0 chr11 61938662 61938963 -86844509 - AluSx SINE Alu -11 301 1 682 184 71 131 chr11 61938963 61939079 -86844393 - L1MC4 LINE L1 -131 7911 7790 2018 74 60 32 chr11 61939081 61939365 -86844107 + AluY SINE Alu 1 292 -19 1226 123 0 0 chr11 61939876 61940046 -86843426 - AluSg/x SINE Alu -7 305 136 2116 96 78 0 chr11 61940047 61940328 -86843144 - AluSq SINE Alu -10 303 1 342 228 31 23 chr11 61940394 61940523 -86842949 + MIR3 SINE MIR 72 201 -7 237 298 99 0 chr11 61940604 61940725 -86842747 + MIR3 SINE MIR 34 166 -42 2399 55 0 3 chr11 61992249 61992540 -86790932 - AluY SINE Alu -21 290 1 1140 52 0 0 chr11 61992540 61992674 -86790798 - AluSc SINE Alu -175 134 1 1552 140 3 97 chr11 61995654 61995789 -86787683 + AluJo SINE Alu 6 152 -160 2186 114 0 9 chr11 61995789 61996104 -86787368 + AluSx SINE Alu 1 312 0 1552 140 3 97 chr11 61996104 61996297 -86787175 + AluJo SINE Alu 152 303 -9 216 384 86 7 chr11 61998558 61998709 -86784763 - L2 LINE L2 -665 2649 2487 1201 146 131 26 chr11 61998990 61999107 -86784365 - AluJb SINE Alu -17 295 192 2304 93 0 0 chr11 61999107 61999417 -86784055 - AluY SINE Alu -1 310 1 1201 146 131 26 chr11 61999417 61999566 -86783906 - AluJb SINE Alu -120 192 1 1732 127 46 11 chr11 61999570 61999854 -86783618 - AluJo SINE Alu -18 294 1 749 222 87 29 chr11 62000185 62000392 -86783080 - MER20 DNA MER1_type 0 219 1 1733 83 0 4 chr11 62000556 62000784 -86782688 - AluSg SINE Alu -82 228 2 306 372 78 31 chr11 62000805 62001063 -86782409 - L2 LINE L2 -797 2517 2248 2276 95 3 0 chr11 62001133 62001439 -86782033 + AluSp SINE Alu 1 307 -6 2260 72 3 0 chr11 62001608 62001899 -86781573 + AluSg SINE Alu 2 293 -17 2555 14 3 7 chr11 62002124 62002420 -86781052 - AluYb8 SINE Alu -23 295 1 784 207 0 0 chr11 62002605 62002740 -86780732 + FRAM SINE Alu 27 161 -15 1288 74 0 0 chr11 62006434 62006596 -86776876 + AluSg/x SINE Alu 135 296 -14 900 174 6 17 chr11 62008119 62008291 -86775181 + AluJb SINE Alu 136 305 -7 571 190 0 56 chr11 62009182 62009324 -86774148 - AluJb SINE Alu 0 312 179 324 0 0 0 chr11 62009326 62009362 -86774110 + (T)n Simple_repeat Simple_repeat 1 36 0 28 0 0 0 chr11 62009382 62009410 -86774062 + GC_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 62009444 62009465 -86774007 + AT_rich Low_complexity Low_complexity 1 21 0 401 212 22 14 chr11 62009730 62009841 -86773631 - MIR SINE MIR -57 151 42 812 120 64 0 chr11 62010674 62010799 -86772673 + AluSq/x SINE Alu 1 133 -179 1866 114 25 0 chr11 62010799 62011079 -86772393 + AluSq SINE Alu 1 287 -26 2109 95 7 10 chr11 62011081 62011376 -86772096 + AluSq SINE Alu 1 294 -19 380 260 10 10 chr11 62011390 62011490 -86771982 - MIR SINE MIR -73 135 36 906 150 20 7 chr11 62013183 62013336 -86770136 + FRAM SINE Alu 4 158 -8 538 282 185 41 chr11 62013436 62013941 -86769531 - L2 LINE L2 -256 3057 2480 2115 127 0 0 chr11 62014333 62014633 -86768839 - AluSx SINE Alu -12 300 1 478 242 33 52 chr11 62014633 62014786 -86768686 + L2 LINE L2 3163 3312 -1 2172 97 3 3 chr11 62015319 62015618 -86767854 + AluSp SINE Alu 1 299 -14 203 235 123 25 chr11 62019000 62019081 -86764391 - L2 LINE L2 -8 3264 3176 221 184 0 0 chr11 62019354 62019392 -86764080 + MIR SINE MIR 32 69 -139 180 322 172 0 chr11 62020593 62020680 -86762792 + MIR SINE MIR 83 184 -78 434 386 38 11 chr11 62020932 62021196 -86762276 - L2 LINE L2 -40 3273 3003 192 281 18 18 chr11 62021340 62021397 -86762075 + MIR SINE MIR 19 75 -187 2095 75 57 4 chr11 62022357 62022638 -86760834 + AluSg SINE Alu 1 296 -14 772 139 0 139 chr11 62023213 62023371 -86760101 - FLAM_C SINE Alu -6 137 2 1933 110 3 3 chr11 62023690 62023992 -86759480 - AluSx SINE Alu 0 302 1 1251 98 98 0 chr11 62024485 62024669 -86758803 - AluSx SINE Alu -110 202 1 1266 52 0 0 chr11 62024737 62024892 -86758580 + L1PA4 LINE L1 5999 6153 -2 321 252 86 33 chr11 62024964 62025045 -86758427 - L1M2 LINE L1 -370 5751 5676 1549 137 111 7 chr11 62025045 62025316 -86758156 - AluSg SINE Alu -11 299 1 321 252 86 33 chr11 62025316 62025386 -86758086 - L1M2 LINE L1 -445 5676 5600 2289 74 0 13 chr11 62025435 62025734 -86757738 + AluY SINE Alu 1 295 -16 347 332 152 27 chr11 62025885 62026213 -86757259 - L1ME1 LINE L1 -236 5930 5562 296 313 12 0 chr11 62026324 62026404 -86757068 + MIR3 SINE MIR 82 162 -46 839 191 98 15 chr11 62026553 62026784 -86756688 + MIR SINE MIR 14 256 -6 1800 163 0 0 chr11 62029135 62029429 -86754043 + AluJo SINE Alu 1 294 -18 770 101 0 187 chr11 62029514 62029647 -86753825 + MER96B DNA MER1_type? 1 79 -338 2254 93 0 7 chr11 62029647 62029948 -86753524 - AluSp SINE Alu -14 299 1 770 101 0 187 chr11 62029948 62030033 -86753439 + MER96B DNA MER1_type? 79 178 -239 1830 120 78 0 chr11 62030276 62030560 -86752912 + AluSx SINE Alu 1 306 -6 2072 102 3 13 chr11 62030631 62030944 -86752528 + AluYb8 SINE Alu 1 310 -8 850 65 9 0 chr11 62031351 62031459 -86752013 - AluSq/x SINE Alu -179 133 25 358 294 68 68 chr11 62031479 62031868 -86751604 - L1MC4 LINE L1 0 8042 7654 1994 130 0 0 chr11 62031868 62032176 -86751296 - AluSx SINE Alu 0 308 1 1510 145 93 7 chr11 62032178 62032447 -86751025 - AluJo SINE Alu -20 292 1 358 294 68 68 chr11 62032447 62032536 -86750936 - L1MC4 LINE L1 -388 7654 7560 352 277 98 11 chr11 62032714 62032898 -86750574 + L1ME4a LINE L1 5922 6121 0 238 290 65 56 chr11 62034084 62034191 -86749281 - MIR SINE MIR -56 152 45 188 271 281 25 chr11 62034537 62034740 -86748732 - L2 LINE L2 0 3272 3018 2000 126 3 7 chr11 62036353 62036655 -86746817 - AluSx SINE Alu -11 301 1 1231 199 40 98 chr11 62036716 62036749 -86746723 + HAL1 LINE L1 1423 1456 -1051 2111 123 0 3 chr11 62036749 62037050 -86746422 + AluSx SINE Alu 1 300 -12 1231 199 40 98 chr11 62037050 62037414 -86746058 + HAL1 LINE L1 1456 1797 -710 262 213 25 25 chr11 62040288 62040368 -86743104 + CT-rich Low_complexity Low_complexity 2 81 0 290 333 0 0 chr11 62040717 62040801 -86742671 + (CCCCAG)n Simple_repeat Simple_repeat 3 86 0 553 307 42 19 chr11 62041413 62041625 -86741847 - MIR SINE MIR -11 251 35 481 240 109 71 chr11 62041966 62042249 -86741223 - L2 LINE L2 -20 3252 2959 285 290 188 23 chr11 62042534 62042710 -86740762 + MER63A DNA MER1_type 2 206 -4 259 308 30 53 chr11 62044470 62044603 -86738869 - L2 LINE L2 -5 3308 3179 398 277 164 17 chr11 62044828 62045005 -86738467 + MIR SINE MIR 37 239 -23 332 253 25 0 chr11 62046837 62046916 -86736556 + MER117 DNA MER1_type 82 162 -35 458 256 31 8 chr11 62049572 62049701 -86733771 - MIR3 SINE MIR -75 133 2 1998 113 16 48 chr11 62050418 62050729 -86732743 - AluSx SINE Alu -9 303 3 2117 96 7 33 chr11 62050735 62051037 -86732435 - AluSg SINE Alu -16 294 1 183 266 94 16 chr11 62051482 62051546 -86731926 - L2 LINE L2 -18 3254 3186 257 238 86 46 chr11 62052567 62052718 -86730754 + MIR SINE MIR 22 178 -84 288 363 89 0 chr11 62052915 62053061 -86730411 - MIR SINE MIR -56 206 48 212 172 35 17 chr11 62053088 62053146 -86730326 + (TTAA)n Simple_repeat Simple_repeat 4 62 0 806 211 0 0 chr11 62053433 62053599 -86729873 - FRAM SINE Alu 0 166 1 1633 91 0 41 chr11 62053656 62053876 -86729596 - AluSc SINE Alu -16 293 83 307 280 0 0 chr11 62053995 62054095 -86729377 - MER113 DNA MER1_type? -421 100 1 250 159 0 0 chr11 62054364 62054408 -86729064 - MLT2C2 LTR ERVL -2 462 419 1922 129 25 7 chr11 62057636 62057922 -86725550 - AluJo SINE Alu -9 303 13 235 98 73 0 chr11 62057926 62057967 -86725505 - Alu SINE Alu -255 45 2 915 149 0 0 chr11 62058342 62058483 -86724989 + AluSg/x SINE Alu 170 310 -2 1715 188 24 0 chr11 62058682 62058975 -86724497 - AluJb SINE Alu -11 301 2 2180 119 7 3 chr11 62059043 62059337 -86724135 + AluSg SINE Alu 1 295 -15 2283 173 38 13 chr11 62060316 62060766 -86722706 + L1MB3 LINE L1 5684 6144 -39 2202 101 7 0 chr11 62060792 62061080 -86722392 + AluSq SINE Alu 23 312 -1 2040 131 41 0 chr11 62061475 62061766 -86721706 - AluJb SINE Alu -9 303 1 249 227 53 13 chr11 62061826 62061901 -86721571 + MIR SINE MIR 65 142 -66 297 250 76 15 chr11 62062568 62062700 -86720772 - MIR3 SINE MIR -53 155 16 189 94 0 0 chr11 62063900 62063932 -86719540 + (CA)n Simple_repeat Simple_repeat 1 32 0 1304 86 6 6 chr11 62065141 62065304 -86718168 - AluSp SINE Alu -149 164 2 1968 135 3 26 chr11 62065588 62065892 -86717580 + AluJb SINE Alu 1 297 -15 459 306 100 6 chr11 62065953 62066133 -86717339 - MIR3 SINE MIR -9 199 3 502 266 68 5 chr11 62066400 62066607 -86716865 + L1ME LINE L1 5571 5790 -331 2228 92 0 7 chr11 62067136 62067429 -86716043 + AluY SINE Alu 1 291 -20 180 0 0 0 chr11 62067672 62067692 -86715780 + (A)n Simple_repeat Simple_repeat 1 20 0 349 235 20 0 chr11 62067719 62067817 -86715655 + LTR30 LTR ERV1 543 642 -80 662 136 0 0 chr11 62067817 62067920 -86715552 + LTR12 LTR ERV1 612 714 0 1878 147 204 25 chr11 62068160 62068567 -86714905 - LTR12 LTR ERV1 -234 480 1 25 31 0 0 chr11 62068865 62068897 -86714575 + GC_rich Low_complexity Low_complexity 1 32 0 2241 91 0 0 chr11 62069567 62069841 -86713631 - AluSx SINE Alu -38 274 1 258 313 60 60 chr11 62069843 62070060 -86713412 - L2 LINE L2 -774 2540 2324 339 143 0 0 chr11 62070060 62070109 -86713363 + Alu SINE Alu 1 49 -251 1235 103 0 0 chr11 62070110 62070266 -86713206 - AluSc SINE Alu -153 156 1 771 112 0 0 chr11 62070645 62070761 -86712711 + (TTTC)n Simple_repeat Simple_repeat 1 116 0 234 91 0 0 chr11 62072186 62072219 -86711253 + (T)n Simple_repeat Simple_repeat 1 33 0 2324 82 24 0 chr11 62072340 62072631 -86710841 + AluY SINE Alu 1 298 -13 257 244 24 0 chr11 62072945 62073027 -86710445 + L1MC4 LINE L1 6615 6698 -1344 387 299 88 28 chr11 62073554 62073771 -86709701 + L2 LINE L2 638 867 -2447 1579 93 15 0 chr11 62074168 62074372 -86709100 - AluY SINE Alu -18 293 87 206 376 60 0 chr11 62074560 62074677 -86708795 - MIR SINE MIR -102 160 37 2244 114 0 7 chr11 62074810 62075118 -86708354 - AluSq SINE Alu -7 306 1 2023 103 30 33 chr11 62076010 62076312 -86707160 - AluSx SINE Alu -11 301 1 391 305 51 0 chr11 62076501 62076619 -86706853 - MIR SINE MIR -89 173 50 231 268 101 43 chr11 62076670 62076808 -86706664 + L2 LINE L2 2224 2369 -945 7552 188 18 50 chr11 62076926 62078778 -86704694 - L1P LINE L1 -3429 2717 926 3903 179 15 8 chr11 62078817 62078927 -86704545 + L1MB1 LINE L1 5376 5484 -684 2208 88 3 70 chr11 62078927 62079256 -86704216 + AluSq SINE Alu 1 307 -6 3903 179 15 8 chr11 62079256 62079897 -86703575 + L1MB1 LINE L1 5484 6132 -36 2053 138 3 22 chr11 62079901 62080031 -86703441 + AluJb SINE Alu 6 137 -175 2038 80 102 0 chr11 62080031 62080305 -86703167 + AluSp SINE Alu 1 302 -11 2053 138 3 22 chr11 62080305 62080485 -86702987 + AluJb SINE Alu 137 310 -2 477 256 23 8 chr11 62080931 62081060 -86702412 - MIR SINE MIR -112 150 20 280 270 71 32 chr11 62081101 62081227 -86702245 - ORSL DNA AcHobo -3 272 142 280 100 0 0 chr11 62081286 62081326 -86702146 + LTR36 LTR ERV1 1 40 -571 2318 103 3 0 chr11 62081328 62081630 -86701842 + AluSq SINE Alu 1 303 -10 2587 74 0 0 chr11 62081630 62081939 -86701533 + AluY SINE Alu 1 310 -1 3299 133 18 68 chr11 62081964 62082420 -86701052 + LTR36 LTR ERV1 26 503 -108 2233 106 7 0 chr11 62082420 62082713 -86700759 - AluSx SINE Alu -17 295 1 3299 133 18 68 chr11 62082713 62082726 -86700746 + LTR36 LTR ERV1 503 515 -96 2264 101 6 22 chr11 62082726 62083044 -86700428 - AluSp SINE Alu 0 313 1 3299 133 18 68 chr11 62083044 62083190 -86700282 + LTR36 LTR ERV1 515 611 0 462 301 146 8 chr11 62083610 62083849 -86699623 + MLT1K LTR MaLR 314 585 -3 2226 100 17 0 chr11 62084147 62084446 -86699026 - AluSq SINE Alu -9 304 1 305 197 0 0 chr11 62084693 62084771 -86698701 + MIR SINE MIR 79 157 -51 368 281 7 58 chr11 62085853 62085992 -86697480 + MIR3 SINE MIR 4 135 -73 1753 171 16 19 chr11 62086034 62086343 -86697129 + AluJo SINE Alu 1 308 -4 1842 121 8 102 chr11 62086448 62086820 -86696652 - MER1B DNA MER1_type 0 337 1 315 297 27 36 chr11 62088239 62088350 -86695122 + MIR SINE MIR 37 146 -116 1745 149 53 0 chr11 62088846 62089127 -86694345 + AluSx SINE Alu 1 296 -16 1966 152 0 25 chr11 62089671 62089987 -86693485 - AluJo SINE Alu -4 308 1 786 163 0 15 chr11 62089989 62090124 -86693348 - FLAM_A SINE Alu 0 133 1 1566 136 121 18 chr11 62090127 62090399 -86693073 - AluJo SINE Alu -12 300 1 268 240 139 47 chr11 62092090 62092219 -86691253 + MIR3 SINE MIR 67 207 -1 324 0 0 0 chr11 62092464 62092500 -86690972 + (TCCC)n Simple_repeat Simple_repeat 2 37 0 306 282 109 0 chr11 62093526 62093636 -86689836 - L2 LINE L2 0 3272 3151 2389 89 0 0 chr11 62093671 62093963 -86689509 + AluSq SINE Alu 1 292 -21 795 286 95 86 chr11 62094289 62094939 -86688533 - L1M4 LINE L1 -1195 4951 4296 2400 89 6 13 chr11 62095120 62095434 -86688038 - AluSx SINE Alu 0 312 1 326 312 16 74 chr11 62095460 62095649 -86687823 + L2 LINE L2 2900 3077 -195 199 122 41 0 chr11 62097164 62097213 -86686259 + (CCG)n Simple_repeat Simple_repeat 2 52 0 29 60 0 0 chr11 62097369 62097419 -86686053 + GC_rich Low_complexity Low_complexity 1 50 0 2259 72 4 4 chr11 62098382 62098661 -86684811 - AluSg SINE Alu -30 280 2 23 0 0 0 chr11 62098666 62098689 -86684783 + AT_rich Low_complexity Low_complexity 1 23 0 1403 135 59 4 chr11 62100649 62100886 -86682586 - AluSx SINE Alu -14 298 49 2412 85 7 3 chr11 62103340 62103645 -86679827 + AluSq SINE Alu 1 306 -7 2058 120 11 0 chr11 62104006 62104282 -86679190 + AluSx SINE Alu 19 297 -15 479 265 105 11 chr11 62104337 62104518 -86678954 + MIR SINE MIR 41 238 -24 268 287 12 23 chr11 62104834 62104945 -86678527 + MIR SINE MIR 90 153 -55 405 0 0 0 chr11 62105729 62105774 -86677698 + (TG)n Simple_repeat Simple_repeat 2 46 0 1297 112 6 0 chr11 62106062 62106240 -86677232 - AluSp SINE Alu -4 309 131 216 0 0 0 chr11 62106505 62106529 -86676943 + (GGA)n Simple_repeat Simple_repeat 1 24 0 2295 79 11 0 chr11 62106656 62106966 -86676506 - AluSx SINE Alu 0 313 1 361 219 0 0 chr11 62107378 62107451 -86676021 + MIR SINE MIR 74 146 -116 1757 149 3 20 chr11 62107990 62108291 -86675181 - AluJo SINE Alu -16 296 1 189 0 0 0 chr11 62109555 62109576 -86673896 + (TGGGGG)n Simple_repeat Simple_repeat 1 21 0 1603 156 91 4 chr11 62109911 62110187 -86673285 + AluJo SINE Alu 1 300 -12 1666 140 47 19 chr11 62110206 62110527 -86672945 + L1MC1 LINE L1 5995 6324 -9 1651 171 13 42 chr11 62110726 62110928 -86672544 - AluJo SINE Alu 0 312 140 2155 129 3 0 chr11 62110928 62111230 -86672242 - AluSg SINE Alu -7 303 1 1651 171 13 42 chr11 62111230 62111367 -86672105 - AluJo SINE Alu -172 140 1 1615 182 49 3 chr11 62111549 62111835 -86671637 - AluJb SINE Alu -13 299 1 29 0 0 0 chr11 62111845 62111874 -86671598 + AT_rich Low_complexity Low_complexity 1 29 0 2272 111 0 35 chr11 62111884 62112200 -86671272 + AluSx SINE Alu 1 305 -7 727 183 0 8 chr11 62112213 62112325 -86671147 + FLAM_C SINE Alu 1 113 -189 261 0 0 0 chr11 62112325 62112354 -86671118 + (TC)n Simple_repeat Simple_repeat 2 30 0 188 65 0 32 chr11 62112526 62112557 -86670915 + (CCCCAG)n Simple_repeat Simple_repeat 1 30 0 226 303 34 0 chr11 62112948 62113037 -86670435 + MIR3 SINE MIR 97 188 -20 2298 82 4 7 chr11 62113151 62113460 -86670012 + AluSq SINE Alu 3 310 0 214 348 33 0 chr11 62113591 62113683 -86669789 + L2 LINE L2 3171 3265 -7 531 290 112 23 chr11 62113686 62113945 -86669527 + L2 LINE L2 2925 3206 -107 339 250 52 0 chr11 62114001 62114097 -86669375 + L2 LINE L2 2842 2942 -330 387 248 35 28 chr11 62114712 62114853 -86668619 + MIR3 SINE MIR 11 152 -56 263 301 102 28 chr11 62115274 62115450 -86668022 - MER5A DNA MER1_type 0 189 1 1131 54 0 148 chr11 62115573 62115776 -86667696 - L1PA8 LINE L1 -8 6164 5992 215 173 99 0 chr11 62115978 62116031 -86667441 + MIR SINE MIR 105 164 -98 430 275 18 0 chr11 62116072 62116181 -86667291 - MER5B DNA MER1_type -42 136 26 321 198 24 0 chr11 62116286 62116412 -86667060 + (TA)n Simple_repeat Simple_repeat 1 129 0 1573 187 40 7 chr11 62116418 62116696 -86666776 - AluJb SINE Alu -25 287 1 314 349 122 18 chr11 62117412 62117641 -86665831 - L2 LINE L2 -94 3178 2926 425 271 79 14 chr11 62117673 62117813 -86665659 - MIR SINE MIR -113 149 1 822 96 0 0 chr11 62117912 62118016 -86665456 - AluSx SINE Alu -15 297 194 1149 99 0 0 chr11 62118017 62118158 -86665314 - AluSx SINE Alu -171 141 1 390 203 14 0 chr11 62119112 62119186 -86664286 - MIR3 SINE MIR -49 159 85 248 260 41 0 chr11 62119347 62119420 -86664052 - MIR SINE MIR -18 244 169 2140 126 0 13 chr11 62119659 62119961 -86663511 + AluSq SINE Alu 1 298 -15 258 225 25 12 chr11 62119976 62120056 -86663416 + MER53 DNA DNA 14 94 -95 757 207 0 47 chr11 62120211 62120380 -86663092 + AluJo SINE Alu 124 284 -28 861 61 0 23 chr11 62120382 62120514 -86662958 + (GGAA)n Simple_repeat Simple_repeat 3 131 0 227 75 0 0 chr11 62120760 62120800 -86662672 - L1ME4a LINE L1 -120 6001 5962 5274 192 162 114 chr11 62120837 62122107 -86661365 - L1P5 LINE L1 -634 5753 4545 409 218 0 0 chr11 62122107 62122185 -86661287 + AluJ/FLAM SINE Alu 2 79 -233 5274 192 162 114 chr11 62122185 62122203 -86661269 - L1P5 LINE L1 -1842 4545 4529 2179 46 0 15 chr11 62122203 62122453 -86661019 - SVA Other Other 0 1386 1139 2229 124 0 0 chr11 62122453 62122751 -86660721 - AluSq SINE Alu -15 298 1 5274 192 162 114 chr11 62122760 62122917 -86660555 - L1P5 LINE L1 -1858 4529 4381 2436 82 0 0 chr11 62122917 62123209 -86660263 - AluY SINE Alu -19 292 1 5274 192 162 114 chr11 62123209 62123565 -86659907 - L1P5 LINE L1 -2006 4381 4043 1829 186 3 13 chr11 62123565 62123741 -86659731 - AluJo SINE Alu -3 309 136 2199 107 10 10 chr11 62123741 62124039 -86659433 - AluSx SINE Alu -14 298 1 1829 186 3 13 chr11 62124039 62124174 -86659298 - AluJo SINE Alu -176 136 1 5274 192 162 114 chr11 62124174 62124212 -86659260 - L1P5 LINE L1 -2344 4043 4008 2500 81 3 3 chr11 62124212 62124520 -86658952 - AluSp SINE Alu -5 308 1 1008 158 0 6 chr11 62124526 62124684 -86658788 - FRAM SINE Alu -21 155 1 1941 162 0 23 chr11 62124692 62125000 -86658472 - AluJo SINE Alu 0 312 12 5274 192 162 114 chr11 62125000 62125712 -86657760 - L1P5 LINE L1 -2389 3998 3321 234 0 0 0 chr11 62125712 62125738 -86657734 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2164 138 3 0 chr11 62125740 62126036 -86657436 - AluSx SINE Alu -15 297 1 5274 192 162 114 chr11 62126036 62126289 -86657183 - L1P5 LINE L1 -3066 3321 3081 1045 186 151 16 chr11 62126289 62126423 -86657049 - AluJo SINE Alu -16 286 171 183 42 0 0 chr11 62126423 62126447 -86657025 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1045 186 151 16 chr11 62126447 62126564 -86656908 - AluJo SINE Alu -131 171 1 5274 192 162 114 chr11 62126564 62126681 -86656791 - L1P5 LINE L1 -3306 3081 2421 766 89 0 0 chr11 62126685 62126786 -86656686 - U6 snRNA snRNA -6 101 1 2296 184 117 90 chr11 62126786 62127079 -86656393 - L1M4c LINE L1 -3931 2715 2431 1512 199 29 7 chr11 62127079 62127360 -86656112 + AluJo SINE Alu 1 287 -25 2296 184 117 90 chr11 62127360 62128036 -86655436 - L1M4c LINE L1 -4215 2431 1720 578 154 0 2 chr11 62128038 62128279 -86655193 + AluSx SINE Alu 1 298 -11 4004 205 17 78 chr11 62128302 62128865 -86654607 - L1M4c LINE L1 -4831 1711 1116 2158 134 0 0 chr11 62128865 62129156 -86654316 + AluSx SINE Alu 1 291 -21 4004 205 17 78 chr11 62129156 62129233 -86654239 - L1M4c LINE L1 -5426 1116 1036 2207 117 23 0 chr11 62129233 62129533 -86653939 - AluSg SINE Alu -3 307 1 4004 205 17 78 chr11 62129533 62129722 -86653750 - L1M4c LINE L1 -5506 1036 837 216 0 0 0 chr11 62129722 62129746 -86653726 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4004 205 17 78 chr11 62129746 62130124 -86653348 - L1M4c LINE L1 -5705 837 575 326 238 20 69 chr11 62130140 62130241 -86653231 - L1MCa LINE L1 -4335 2091 1996 * 344 290 0 32 chr11 62130226 62130319 -86653153 + L1MC4 LINE L1 6614 6703 -1339 363 136 0 0 chr11 62130321 62130380 -86653092 + (TG)n Simple_repeat Simple_repeat 2 60 0 885 212 0 0 chr11 62130392 62130538 -86652934 + FRAM SINE Alu 1 146 -30 785 250 0 0 chr11 62130539 62130719 -86652753 - MLT1D-int LTR MaLR -912 459 280 1437 164 0 0 chr11 62130729 62130943 -86652529 - AluSg/x SINE Alu -4 308 95 891 152 19 0 chr11 62130965 62131123 -86652349 - MLT1D-int LTR MaLR -1210 161 1 1525 229 120 20 chr11 62131123 62131582 -86651890 - MLT1D LTR MaLR 0 505 1 399 275 78 56 chr11 62131584 62131631 -86651841 + L1ME3A LINE L1 5782 5827 -343 2330 107 3 0 chr11 62131631 62131930 -86651542 + AluSg SINE Alu 1 300 -10 399 275 78 56 chr11 62131930 62132024 -86651448 + L1ME3A LINE L1 5827 5926 -244 423 233 60 17 chr11 62132098 62132214 -86651258 + L2 LINE L2 3192 3312 -1 313 139 0 0 chr11 62132297 62132340 -86651132 - Alu SINE Alu -256 44 2 1916 238 147 83 chr11 62132343 62132428 -86651044 - HAL1 LINE L1 -1158 1349 1271 2566 70 0 0 chr11 62132428 62132730 -86650742 - AluY SINE Alu -9 302 1 1916 238 147 83 chr11 62132730 62133652 -86649820 - HAL1 LINE L1 -1236 1271 278 350 242 53 79 chr11 62133691 62133918 -86649554 - L1MEd LINE L1 -3595 2534 2314 2070 113 7 0 chr11 62133918 62134193 -86649279 - AluJb SINE Alu -25 287 11 656 141 74 7 chr11 62134289 62134438 -86649034 - L1MB3 LINE L1 -11 6172 6014 1950 154 6 16 chr11 62134504 62134816 -86648656 + AluSq SINE Alu 1 309 -4 2232 98 3 10 chr11 62134816 62135110 -86648362 + AluSc SINE Alu 1 293 -16 1816 133 40 33 chr11 62135165 62135466 -86648006 - AluSx SINE Alu -9 303 1 1143 124 5 0 chr11 62135473 62135675 -86647797 + L1MA4 LINE L1 6096 6298 -2 492 296 34 52 chr11 62135679 62136003 -86647469 - L1MEd LINE L1 -5241 878 561 260 329 48 53 chr11 62136643 62136757 -86646715 + L2 LINE L2 2678 2792 -522 2090 138 123 5 chr11 62136757 62137140 -86646332 - MSTA LTR MaLR 0 428 1 260 329 48 53 chr11 62137140 62137232 -86646240 + L2 LINE L2 2792 2883 -431 1825 138 24 106 chr11 62137338 62137588 -86645884 - MSTB LTR MaLR 0 426 157 1750 124 29 0 chr11 62137588 62137829 -86645643 + AluSx SINE Alu 1 248 -64 1825 138 24 106 chr11 62137829 62137882 -86645590 - MSTB LTR MaLR -269 157 101 2191 104 10 3 chr11 62137882 62138170 -86645302 + AluSg SINE Alu 1 290 -20 1825 138 24 106 chr11 62138170 62138329 -86645143 - MSTB LTR MaLR -325 101 1 301 278 174 0 chr11 62138363 62138478 -86644994 + L2 LINE L2 3178 3312 -1 234 0 0 0 chr11 62138604 62138630 -86644842 + (T)n Simple_repeat Simple_repeat 1 26 0 291 381 30 10 chr11 62138762 62139087 -86644385 + L2 LINE L2 2661 2990 -323 2211 118 0 7 chr11 62139088 62139385 -86644087 - AluSx SINE Alu -17 295 1 422 284 50 73 chr11 62139458 62139690 -86643782 + MIR SINE MIR 1 220 -42 300 343 30 0 chr11 62140480 62140614 -86642858 + MIR SINE MIR 16 153 -55 263 217 167 0 chr11 62141445 62141505 -86641967 + MIR3 SINE MIR 86 155 -53 2418 90 3 6 chr11 62142184 62142496 -86640976 - AluSp SINE Alu -2 311 1 2033 82 18 94 chr11 62142499 62142828 -86640644 - AluY SINE Alu -7 304 1 552 187 9 19 chr11 62142870 62142977 -86640495 - MIR SINE MIR -57 151 46 369 265 128 0 chr11 62143365 62143482 -86639990 - MIR SINE MIR -119 143 12 939 168 122 46 chr11 62143526 62143723 -86639749 + AluJo SINE Alu 100 311 -1 26 30 0 0 chr11 62143749 62143782 -86639690 + AT_rich Low_complexity Low_complexity 1 33 0 2470 76 3 0 chr11 62143785 62144089 -86639383 - AluSp SINE Alu -4 309 5 322 344 0 16 chr11 62144796 62144918 -86638554 - MIR3 SINE MIR -44 164 45 354 351 53 0 chr11 62145901 62146052 -86637420 + MER91A DNA MER1_type 2 160 -36 310 273 83 8 chr11 62146098 62146219 -86637253 + L2 LINE L2 3184 3313 0 24 32 0 0 chr11 62147105 62147136 -86636336 + GC_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr11 62147884 62147905 -86635567 + GC_rich Low_complexity Low_complexity 1 21 0 2260 112 0 0 chr11 62148377 62148672 -86634800 - AluSx SINE Alu -17 295 1 2379 69 21 3 chr11 62148686 62148980 -86634492 - AluY SINE Alu -14 297 3 205 281 0 73 chr11 62149523 62149605 -86633867 + L2 LINE L2 3195 3270 -2 191 121 30 0 chr11 62149928 62149961 -86633511 + MIR SINE MIR 111 144 -64 321 211 0 0 chr11 62150501 62150558 -86632914 + MIR SINE MIR 70 126 -82 193 188 0 0 chr11 62150985 62151017 -86632455 + L2 LINE L2 3264 3295 -18 292 289 22 0 chr11 62152065 62152155 -86631317 + MIR SINE MIR 49 140 -68 464 239 26 0 chr11 62154553 62154666 -86628806 + MIR SINE MIR 30 145 -63 471 147 0 0 chr11 62154693 62154768 -86628704 - AluS SINE Alu -7 305 231 1187 70 0 0 chr11 62154768 62154911 -86628561 - AluSq/x SINE Alu -169 143 1 212 276 146 41 chr11 62155313 62155436 -86628036 - MIR3 SINE MIR -68 140 5 240 225 42 0 chr11 62155757 62155828 -86627644 - MIR SINE MIR -77 131 58 199 361 0 46 chr11 62156144 62156252 -86627220 - L2 LINE L2 -11 3302 3200 189 287 96 11 chr11 62156262 62156356 -86627116 - MIR SINE MIR -72 190 89 304 238 28 24 chr11 62157657 62157741 -86625731 + MIR3 SINE MIR 71 155 -53 363 250 14 0 chr11 62157820 62157926 -86625546 + MIR SINE MIR 73 145 -63 242 298 11 43 chr11 62158801 62158895 -86624577 + MIR SINE MIR 56 146 -62 255 61 0 0 chr11 62159154 62159187 -86624285 + (TCTG)n Simple_repeat Simple_repeat 3 35 0 385 273 132 14 chr11 62160635 62160855 -86622617 - L2 LINE L2 -223 3049 2804 2164 121 0 3 chr11 62160911 62161208 -86622264 + AluSx SINE Alu 1 296 -16 1998 133 16 13 chr11 62162395 62162703 -86620769 - AluSx SINE Alu -3 309 1 199 254 42 14 chr11 62162714 62162785 -86620687 - MIR SINE MIR -68 140 68 1068 259 95 14 chr11 62162785 62163202 -86620270 - MLT1E3 LTR MaLR -5 619 121 419 223 216 4 chr11 62164422 62164765 -86618707 - LTR16A1 LTR ERVL 0 457 1 189 0 0 0 chr11 62165152 62165173 -86618299 + (CTG)n Simple_repeat Simple_repeat 2 22 0 207 186 0 0 chr11 62167036 62167079 -86616393 + CT-rich Low_complexity Low_complexity 1 43 0 595 260 159 0 chr11 62168734 62168942 -86614530 - MIR SINE MIR -19 243 3 337 255 43 11 chr11 62169239 62169333 -86614139 + MIR3 SINE MIR 81 177 -31 2732 167 67 32 chr11 62169343 62169384 -86614088 - L1MB2 LINE L1 -4 6167 6129 1940 112 0 65 chr11 62169384 62169724 -86613748 - AluSx SINE Alu 0 312 1 2732 167 67 32 chr11 62169724 62170060 -86613412 - L1MB2 LINE L1 -42 6129 5755 2049 108 29 10 chr11 62170060 62170366 -86613106 - AluSp SINE Alu -1 312 1 2732 167 67 32 chr11 62170366 62170645 -86612827 - L1MB2 LINE L1 -416 5755 5487 1659 138 46 28 chr11 62170647 62170929 -86612543 - AluJb SINE Alu -24 288 2 781 137 0 8 chr11 62170933 62171057 -86612415 - FLAM_C SINE Alu 0 143 21 568 194 23 6 chr11 62171058 62171204 -86612268 - L1P4 LINE L1 -678 5488 5346 395 229 209 20 chr11 62171871 62172024 -86611448 + MER5A DNA MER1_type 5 186 -3 1690 130 23 43 chr11 62172189 62172488 -86610984 + AluJb SINE Alu 3 295 -17 28 79 0 0 chr11 62173100 62173163 -86610309 + GC_rich Low_complexity Low_complexity 1 63 0 239 127 36 18 chr11 62173218 62173273 -86610199 + (CGG)n Simple_repeat Simple_repeat 1 56 0 180 111 0 0 chr11 62174593 62174620 -86608852 + (A)n Simple_repeat Simple_repeat 1 27 0 817 145 0 35 chr11 62174878 62175023 -86608449 - FLAM_C SINE Alu -3 140 1 2211 58 14 4 chr11 62175090 62175367 -86608105 - AluSg SINE Alu -30 280 1 2307 83 0 3 chr11 62175540 62175842 -86607630 + AluSp SINE Alu 1 301 -12 405 310 0 9 chr11 62175855 62175968 -86607504 + MIR3 SINE MIR 48 159 -49 610 265 92 42 chr11 62176696 62176934 -86606538 - MIR SINE MIR -12 250 1 249 329 0 12 chr11 62176965 62177047 -86606425 - L2 LINE L2 -5 3308 3228 546 319 81 19 chr11 62177054 62177377 -86606095 - L2 LINE L2 -338 2976 2634 285 259 30 0 chr11 62177531 62177606 -86605866 + MIR SINE MIR 77 146 -62 545 209 116 0 chr11 62177910 62178039 -86605433 - MIR SINE MIR 0 262 119 323 151 164 0 chr11 62178711 62178784 -86604688 + MIR SINE MIR 79 163 -99 424 345 59 5 chr11 62179285 62179488 -86603984 - MIR SINE MIR -16 246 33 381 200 75 42 chr11 62179616 62179736 -86603736 + MIR SINE MIR 20 143 -65 324 281 31 13 chr11 62180223 62180249 -86603223 + MIR SINE MIR 13 37 -171 1921 89 8 4 chr11 62180249 62180507 -86602965 - L1PA8 LINE L1 0 6172 5914 324 281 31 13 chr11 62180507 62180591 -86602881 + MIR SINE MIR 37 128 -80 2144 162 27 8 chr11 62181335 62181705 -86601767 + L1MB3 LINE L1 5806 6182 -1 2000 147 0 0 chr11 62181707 62182014 -86601458 + AluSx SINE Alu 1 307 -5 1665 176 4 4 chr11 62182027 62182305 -86601167 + AluJo SINE Alu 12 289 -23 2023 131 6 16 chr11 62182323 62182637 -86600835 + AluJb SINE Alu 1 311 -1 207 266 13 25 chr11 62183416 62183495 -86599977 + CT-rich Low_complexity Low_complexity 6 83 0 843 147 0 37 chr11 62183570 62183706 -86599766 - FLAM_C SINE Alu -2 131 1 863 124 9 2 chr11 62183734 62183980 -86599492 + AluSx SINE Alu 1 296 -16 212 276 17 26 chr11 62184457 62184573 -86598899 + (TCTG)n Simple_repeat Simple_repeat 1 115 0 234 207 0 0 chr11 62185510 62185568 -86597904 + (TGAA)n Simple_repeat Simple_repeat 3 60 0 279 253 46 23 chr11 62185691 62185778 -86597694 + MIR3 SINE MIR 81 169 -39 186 352 56 0 chr11 62187936 62188007 -86595465 + MIR SINE MIR 117 191 -71 654 126 126 44 chr11 62189085 62189203 -86594269 - LTR47A LTR ERVL -4 448 316 1992 97 6 69 chr11 62189203 62189522 -86593950 + AluSx SINE Alu 1 299 -13 654 126 126 44 chr11 62189522 62189538 -86593934 - LTR47A LTR ERVL -136 316 303 470 302 29 50 chr11 62189776 62190054 -86593418 - L2 LINE L2 -94 3219 2948 361 324 95 0 chr11 62190110 62190289 -86593183 - L2 LINE L2 -582 2732 2537 186 345 0 11 chr11 62192861 62192948 -86590524 + MIR SINE MIR 26 111 -151 243 280 103 47 chr11 62193057 62193164 -86590308 + MIR3 SINE MIR 77 189 -19 199 242 77 55 chr11 62195967 62196058 -86587414 + MIR SINE MIR 7 99 -163 2085 79 22 14 chr11 62196182 62196348 -86587124 - AluSc SINE Alu 0 303 133 2355 60 7 7 chr11 62196348 62196649 -86586823 - AluY SINE Alu -10 301 1 2085 79 22 14 chr11 62196649 62196783 -86586689 - AluSc SINE Alu -170 133 1 1684 139 0 94 chr11 62199764 62199900 -86583572 + AluJo SINE Alu 6 153 -159 2172 118 0 9 chr11 62199900 62200215 -86583257 + AluSx SINE Alu 1 312 0 1684 139 0 94 chr11 62200215 62200408 -86583064 + AluJo SINE Alu 153 304 -8 249 397 80 0 chr11 62202670 62202821 -86580651 - L2 LINE L2 -665 2649 2487 1216 165 103 22 chr11 62203102 62203225 -86580247 - AluJb SINE Alu -17 295 183 2364 85 0 0 chr11 62203225 62203532 -86579940 - AluY SINE Alu -4 307 1 1216 165 103 22 chr11 62203532 62203681 -86579791 - AluJb SINE Alu -129 183 1 1791 123 46 11 chr11 62203685 62203969 -86579503 - AluJo SINE Alu -18 294 1 185 301 114 32 chr11 62204018 62204237 -86579235 - L2 LINE L2 -1198 2116 1880 780 222 87 29 chr11 62204300 62204507 -86578965 - MER20 DNA MER1_type 0 219 1 1731 88 0 4 chr11 62204671 62204899 -86578573 - AluSg SINE Alu -82 228 2 313 372 78 31 chr11 62204920 62205178 -86578294 - L2 LINE L2 -797 2517 2248 2305 95 3 0 chr11 62205248 62205554 -86577918 + AluSp SINE Alu 1 307 -6 2270 72 3 0 chr11 62205723 62206013 -86577459 + AluSg SINE Alu 2 292 -18 1904 137 37 3 chr11 62206126 62206425 -86577047 + AluSq SINE Alu 1 309 -4 598 227 23 109 chr11 62206425 62206681 -86576791 + MLT1B LTR MaLR 157 390 0 218 239 130 11 chr11 62207863 62207955 -86575517 - MIR SINE MIR -135 127 25 211 205 0 0 chr11 62207951 62207990 -86575482 + L2 LINE L2 3231 3269 -3 * 191 293 0 15 chr11 62208303 62208371 -86575101 - MER5B DNA MER1_type -67 122 44 195 345 11 11 chr11 62208771 62208858 -86574614 - MIR3 SINE MIR -1 207 121 583 355 28 0 chr11 62210115 62210332 -86573140 + MIR SINE MIR 32 254 -8 484 118 0 32 chr11 62211256 62211349 -86572123 + (GGAA)n Simple_repeat Simple_repeat 2 91 0 485 341 51 67 chr11 62211352 62211388 -86572084 + L1M4 LINE L1 4152 4187 -1959 2147 92 0 7 chr11 62211388 62211718 -86571754 - AluY SINE Alu 0 311 1 485 341 51 67 chr11 62211718 62212030 -86571442 + L1M4 LINE L1 4187 4496 -1650 2139 138 0 0 chr11 62212030 62212341 -86571131 + AluSx SINE Alu 1 311 -1 485 341 51 67 chr11 62212341 62212363 -86571109 + L1M4 LINE L1 4496 4517 -1629 2145 100 0 0 chr11 62214042 62214351 -86569121 + AluSg SINE Alu 1 309 0 1877 167 0 6 chr11 62214531 62214843 -86568629 - AluJo SINE Alu -2 310 1 308 309 27 18 chr11 62214850 62214960 -86568512 + L1ME4a LINE L1 5922 6032 -89 1220 140 14 54 chr11 62214986 62215208 -86568264 - AluJo SINE Alu -14 298 86 276 374 11 84 chr11 62215305 62215396 -86568076 + MIR3 SINE MIR 6 77 -131 2107 105 14 3 chr11 62215396 62215692 -86567780 + AluSg SINE Alu 1 299 -11 276 374 11 84 chr11 62215692 62215790 -86567682 + MIR3 SINE MIR 77 181 -27 252 333 0 13 chr11 62216622 62216697 -86566775 + MIR3 SINE MIR 98 171 -37 2072 219 23 37 chr11 62216817 62217357 -86566115 + L1MB8 LINE L1 5612 6145 -33 2041 90 58 0 chr11 62217357 62217635 -86565837 + AluSx SINE Alu 1 294 -18 2072 219 23 37 chr11 62217635 62217657 -86565815 + L1MB8 LINE L1 6145 6166 -12 210 229 21 0 chr11 62218147 62218195 -86565277 + GA-rich Low_complexity Low_complexity 1 49 0 1579 144 61 4 chr11 62218206 62218469 -86565003 + AluSx SINE Alu 35 312 0 1802 91 37 0 chr11 62218773 62219015 -86564457 - AluSq SINE Alu 0 313 63 258 200 40 0 chr11 62319079 62319154 -86464318 - L1ME4a LINE L1 -195 5926 5849 780 281 53 53 chr11 62319434 62319592 -86463880 - HAL1 LINE L1 -439 2068 1911 1499 177 16 59 chr11 62319592 62319721 -86463751 + AluJb SINE Alu 9 142 -170 2113 104 4 4 chr11 62319721 62320030 -86463442 + AluSc SINE Alu 2 310 0 1499 177 16 59 chr11 62320030 62320204 -86463268 + AluJb SINE Alu 142 300 -12 780 281 53 53 chr11 62320204 62320590 -86462882 - HAL1 LINE L1 -595 1912 1524 2131 100 7 17 chr11 62321882 62322183 -86461289 + AluSq SINE Alu 1 298 -15 210 37 0 0 chr11 62322202 62322229 -86461243 + (CA)n Simple_repeat Simple_repeat 1 27 0 320 326 67 45 chr11 62322241 62322349 -86461123 + L1ME3A LINE L1 5781 5896 -274 2106 146 0 3 chr11 62322349 62322657 -86460815 + AluSx SINE Alu 1 307 -5 320 326 67 45 chr11 62322657 62322726 -86460746 + L1ME3A LINE L1 5896 5962 -208 753 206 60 17 chr11 62324065 62324340 -86459132 + MER4D LTR ERV1 577 903 0 1750 245 42 53 chr11 62324348 62324936 -86458536 - MER21B LTR ERV1 -125 738 157 2014 124 39 44 chr11 62324936 62325268 -86458204 + THE1C LTR MaLR 1 333 -95 1870 126 0 8 chr11 62325268 62325530 -86457942 + AluSx SINE Alu 42 301 -11 2014 124 39 44 chr11 62325530 62325626 -86457846 + THE1C LTR MaLR 333 428 0 2084 190 18 29 chr11 62325723 62326226 -86457246 + MER41B LTR ERV1 132 474 -12 343 173 0 40 chr11 62326226 62326301 -86457171 + FLAM_A SINE Alu 46 117 -16 588 224 49 6 chr11 62326740 62326923 -86456549 - AluSg/x SINE Alu -4 308 118 1423 163 29 14 chr11 62327445 62327721 -86455751 + Tigger3(Golem) DNA MER2_type 69 3038 0 1674 176 3 10 chr11 62328068 62328358 -86455114 + AluJo SINE Alu 1 288 -24 362 193 74 52 chr11 62328367 62328502 -86454970 + L1MA7 LINE L1 6128 6265 -26 1939 166 0 0 chr11 62328507 62328790 -86454682 + AluSx SINE Alu 1 283 -29 1873 142 0 7 chr11 62329089 62329364 -86454108 + AluJb SINE Alu 1 273 -39 234 239 28 56 chr11 62329372 62329443 -86454029 + MIR3 SINE MIR 9 77 -131 442 306 143 5 chr11 62329449 62329645 -86453827 - MIR SINE MIR -3 259 37 576 200 100 67 chr11 62329712 62329892 -86453580 - AluJb SINE Alu -12 300 115 401 234 72 0 chr11 62329929 62330040 -86453432 - AluSc SINE Alu -185 124 6 1663 159 14 7 chr11 62330734 62331024 -86452448 + MSTC LTR MaLR 137 428 0 1308 218 136 9 chr11 62331059 62331398 -86452074 + Cheshire DNA MER1_type 1 382 -2038 2367 98 0 0 chr11 62331423 62331720 -86451752 - AluSx SINE Alu -15 297 1 1438 190 3 3 chr11 62331720 62332025 -86451447 - L1MA6 LINE L1 -351 5949 5645 949 230 10 0 chr11 62332027 62332223 -86451249 - MER8 DNA MER2_type -2 237 40 356 282 9 0 chr11 62332231 62332341 -86451131 - Charlie2 DNA MER1_type -868 1994 1884 526 169 7 63 chr11 62333631 62333773 -86449699 - MER96B DNA MER1_type? -238 179 46 481 257 87 47 chr11 62334040 62334293 -86449179 - ORSL DNA AcHobo 0 275 13 4560 230 12 35 chr11 62334295 62335201 -86448271 + HERVI LTR ERV1 797 1673 -6112 3300 217 33 60 chr11 62335201 62336196 -86447276 + LTR5 LTR ERVK 2 969 0 4560 230 12 35 chr11 62336196 62336419 -86447053 + HERVI LTR ERV1 1673 1900 -5885 2256 237 9 0 chr11 62336738 62337296 -86446176 - L1P LINE L1 -3201 2945 2383 1132 136 49 0 chr11 62337296 62337458 -86446014 - AluSg/x SINE Alu -9 301 132 2162 121 7 0 chr11 62337458 62337755 -86445717 - AluSq SINE Alu -14 299 1 2346 82 7 7 chr11 62338353 62338646 -86444826 - AluSp SINE Alu -20 293 1 2381 96 3 0 chr11 62338665 62338967 -86444505 - AluSp SINE Alu -7 306 4 1979 130 0 3 chr11 62339012 62339297 -86444175 - AluSx SINE Alu -28 284 1 2232 103 23 0 chr11 62340007 62340307 -86443165 + AluSq SINE Alu 1 307 -6 1321 106 0 0 chr11 62340307 62340477 -86442995 + AluSp SINE Alu 134 303 -10 324 187 27 0 chr11 62340477 62340552 -86442920 + MLT1A1 LTR MaLR 74 150 -215 1171 214 0 46 chr11 62341519 62341804 -86441668 - AluJo SINE Alu -11 301 30 1050 181 22 103 chr11 62341808 62342062 -86441410 + LTR56 LTR ERV1 99 288 -149 2227 104 7 0 chr11 62342062 62342344 -86441128 + AluSg SINE Alu 1 285 -21 240 59 0 0 chr11 62342344 62342378 -86441094 + (CACAA)n Simple_repeat Simple_repeat 4 37 0 1050 181 22 103 chr11 62342382 62342521 -86440951 + LTR56 LTR ERV1 288 437 0 2199 135 3 0 chr11 62342784 62343088 -86440384 - AluSx SINE Alu -7 305 1 180 200 0 0 chr11 62343213 62343253 -86440219 + CT-rich Low_complexity Low_complexity 2 41 0 1084 225 39 35 chr11 62343847 62344132 -86439340 - AluJo SINE Alu -16 286 1 2451 54 3 7 chr11 62344139 62344436 -86439036 - AluY SINE Alu -14 297 2 291 319 12 19 chr11 62344573 62344733 -86438739 + L1MEc LINE L1 22 180 -6216 776 117 36 0 chr11 62344734 62344845 -86438627 + AluSq SINE Alu 74 188 -125 291 71 0 0 chr11 62344941 62344983 -86438489 + (TTA)n Simple_repeat Simple_repeat 2 43 0 2355 68 0 4 chr11 62344989 62345269 -86438203 - AluSx SINE Alu -33 279 1 2206 97 0 7 chr11 62345269 62345615 -86437857 - AluSx SINE Alu 0 344 1 22 0 0 0 chr11 62345876 62345898 -86437574 + AT_rich Low_complexity Low_complexity 1 22 0 344 248 120 38 chr11 62346343 62346476 -86436996 - L1MEc LINE L1 -2918 3297 2121 733 92 10 0 chr11 62348234 62348332 -86435140 + AluSq/x SINE Alu 33 131 -182 248 371 28 42 chr11 62350677 62350820 -86432652 + L2 LINE L2 3125 3265 -7 * 328 333 0 0 chr11 62350791 62350878 -86432594 - L2 LINE L2 -2 3311 3225 755 123 0 0 chr11 62350961 62351067 -86432405 - AluSx SINE Alu -13 299 194 1250 57 0 0 chr11 62351068 62351209 -86432263 - AluSx SINE Alu -172 141 1 882 220 78 40 chr11 62351291 62351587 -86431885 + Charlie1a DNA MER1_type 1 307 -1148 2103 123 3 7 chr11 62351589 62351881 -86431591 - AluSc SINE Alu -18 291 1 2833 216 22 11 chr11 62351881 62352654 -86430818 - L1PA15-16 LINE L1 -3755 3094 2310 390 287 4 25 chr11 62353350 62353594 -86429878 - AluSx SINE Alu -63 239 1 274 238 69 30 chr11 62353946 62354047 -86429425 + Charlie2 DNA MER1_type 1 105 -2677 2177 101 6 25 chr11 62354074 62354391 -86429081 - AluSq SINE Alu -2 311 1 380 73 0 0 chr11 62354476 62354531 -86428941 - AluSp/q SINE Alu -1 302 248 2356 91 3 0 chr11 62354563 62354872 -86428600 - AluSp SINE Alu -3 310 1 369 321 52 0 chr11 62354879 62355013 -86428459 + Charlie2 DNA MER1_type 182 322 -2540 309 228 30 20 chr11 62354997 62355098 -86428374 + Charlie2 DNA MER1_type 1836 1937 -925 * 664 246 63 29 chr11 62355376 62355583 -86427889 - MER20 DNA MER1_type -4 215 2 2092 74 3 23 chr11 62355721 62356020 -86427452 - AluSq SINE Alu -20 293 1 355 257 164 18 chr11 62357821 62357992 -86425480 + MIR SINE MIR 2 197 -65 207 290 29 14 chr11 62358891 62358960 -86424512 - L2 LINE L2 -67 3205 3136 2172 100 0 7 chr11 62359301 62359602 -86423870 - AluSg SINE Alu -11 299 1 550 200 11 67 chr11 62359767 62359947 -86423525 + MER2 DNA MER2_type 3 172 -173 1187 167 92 66 chr11 62360454 62360802 -86422670 + Cheshire DNA MER1_type 2062 2418 -2 1808 129 21 0 chr11 62360825 62361112 -86422360 + AluSx SINE Alu 1 293 -19 2132 84 3 23 chr11 62361115 62361425 -86422047 + AluSc SINE Alu 1 304 -5 628 224 21 52 chr11 62361439 62361631 -86421841 + L1ME1 LINE L1 5931 6116 -50 1969 122 7 7 chr11 62361646 62361949 -86421523 + AluSp SINE Alu 1 303 -10 288 0 0 0 chr11 62361960 62361992 -86421480 + (GGAA)n Simple_repeat Simple_repeat 2 33 0 198 0 0 0 chr11 62361993 62362015 -86421457 + (CAGT)n Simple_repeat Simple_repeat 1 22 0 2043 109 3 16 chr11 62363356 62363660 -86419812 - AluSc SINE Alu -9 300 1 217 284 21 95 chr11 62363799 62363894 -86419578 + MIR SINE MIR 38 125 -83 2351 74 3 0 chr11 62364518 62364829 -86418643 + AluSx SINE Alu 1 312 0 192 77 0 0 chr11 62364833 62364859 -86418613 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 1163 201 119 0 chr11 62366580 62366849 -86416623 + L1MB3 LINE L1 4532 4832 -1314 2884 157 31 36 chr11 62366850 62367436 -86416036 + L1MB3 LINE L1 5600 6182 -1 273 177 0 81 chr11 62367552 62367614 -86415858 - FLAM SINE Alu -1 132 76 634 170 8 6 chr11 62367650 62367905 -86415567 + AluJ SINE Alu 1 303 -9 232 292 47 76 chr11 62369296 62369467 -86414005 + MIR SINE MIR 88 253 -9 22 0 0 0 chr11 62369595 62369617 -86413855 + AT_rich Low_complexity Low_complexity 1 22 0 182 244 45 24 chr11 62370653 62370729 -86412743 + MIR SINE MIR 33 110 -98 1990 111 7 13 chr11 62370801 62371107 -86412365 + AluSx SINE Alu 1 304 -8 901 248 83 20 chr11 62371754 62371809 -86411663 + MLT1C LTR MaLR 198 248 -219 2076 113 3 13 chr11 62371809 62372110 -86411362 + AluSq SINE Alu 1 298 -15 901 248 83 20 chr11 62372110 62372308 -86411164 + MLT1C LTR MaLR 248 467 0 207 278 33 67 chr11 62372406 62372496 -86410976 - L3 LINE CR1 -11 1566 1480 243 163 0 0 chr11 62373041 62373090 -86410382 - MLT1C LTR MaLR -233 234 186 363 245 0 29 chr11 62373322 62373424 -86410048 + AluJ/FLAM SINE Alu 1 99 -203 713 133 6 121 chr11 62374202 62374375 -86409097 + MER21A LTR ERV1 13 165 -766 1196 166 40 0 chr11 62374402 62374601 -86408871 + MER39 LTR ERV1 267 473 -234 2205 85 0 0 chr11 62374606 62374942 -86408530 - AluSg SINE Alu 0 337 2 527 130 5 245 chr11 62375363 62375422 -86408050 - MLT1D LTR MaLR -5 500 429 858 159 8 0 chr11 62375422 62375554 -86407918 + FLAM_C SINE Alu 1 133 0 527 130 5 245 chr11 62375554 62375686 -86407786 - MLT1D LTR MaLR -76 429 355 741 203 0 0 chr11 62375707 62375840 -86407632 - FLAM_C SINE Alu 0 133 1 2945 100 8 33 chr11 62375841 62376329 -86407143 + MER4-int LTR ERV1 1539 2014 -4584 180 0 0 0 chr11 62376329 62376349 -86407123 + (T)n Simple_repeat Simple_repeat 1 20 0 189 74 0 0 chr11 62377481 62377508 -86405964 + (CAGA)n Simple_repeat Simple_repeat 4 30 0 265 224 60 15 chr11 62378067 62378134 -86405338 - MIR SINE MIR -162 100 31 326 340 90 0 chr11 62378302 62378446 -86405026 - MIR SINE MIR -21 241 85 1968 108 14 7 chr11 62379597 62379892 -86403580 - AluSx SINE Alu -15 297 1 304 288 170 26 chr11 62380115 62380268 -86403204 + L1MC4 LINE L1 5708 5882 -1926 321 140 0 0 chr11 62380833 62380890 -86402582 + (TCCCC)n Simple_repeat Simple_repeat 2 58 0 208 314 58 0 chr11 62381300 62381386 -86402086 + MIR SINE MIR 110 200 -62 301 329 42 11 chr11 62381431 62381610 -86401862 + MIR SINE MIR 25 208 -54 367 202 179 28 chr11 62382175 62382334 -86401138 + MER20B DNA MER1_type 35 214 -5 198 0 0 0 chr11 62382453 62382475 -86400997 + (T)n Simple_repeat Simple_repeat 1 22 0 253 208 0 0 chr11 62382920 62382973 -86400499 + (CA)n Simple_repeat Simple_repeat 1 53 0 2041 113 0 7 chr11 62382990 62383291 -86400181 - AluSx SINE Alu -13 299 1 2077 121 0 0 chr11 62383478 62383767 -86399705 - AluSx SINE Alu -23 289 1 1985 118 0 0 chr11 62383979 62384266 -86399206 - AluSq SINE Alu -3 310 24 2021 124 0 0 chr11 62384434 62384724 -86398748 + AluSx SINE Alu 16 305 -7 1053 164 0 0 chr11 62384795 62384966 -86398506 - AluJ SINE Alu -5 307 137 342 326 0 0 chr11 62384966 62385055 -86398417 - L1MC4 LINE L1 -1339 6703 6615 333 260 0 62 chr11 62384970 62385066 -86398406 + L1MC4 LINE L1 6614 6703 -1339 * 369 255 0 69 chr11 62385072 62385174 -86398298 - L1MC4 LINE L1 -1339 6703 6609 763 177 31 0 chr11 62385174 62385304 -86398168 - AluJ SINE Alu -177 135 2 557 162 7 63 chr11 62386447 62386589 -86396883 - MER96B DNA MER1_type? -238 179 46 524 257 87 47 chr11 62386856 62387109 -86396363 - ORSL DNA AcHobo 0 275 13 17752 202 13 15 chr11 62387111 62388019 -86395453 + LTR10B-int LTR ERV1 797 1706 -6079 3436 194 34 59 chr11 62388019 62388997 -86394475 + LTR5 LTR ERVK 2 954 -15 17752 202 13 15 chr11 62388997 62391412 -86392060 + LTR10B-int LTR ERV1 1706 4112 -3673 319 269 0 0 chr11 62391400 62391478 -86391994 + LTR10B-int LTR ERV1 1414 1491 -5405 * 12034 252 35 34 chr11 62391473 62394874 -86388598 + LTR10B-int LTR ERV1 4099 7500 -285 2834 169 27 51 chr11 62394875 62395496 -86387976 + LTR10E LTR ERV1 1 609 0 1431 222 0 14 chr11 62395500 62395788 -86387684 + LTR10B-int LTR ERV1 6366 6649 0 1196 249 79 59 chr11 62395788 62396283 -86387189 + LTR10B LTR ERV1 1 505 0 2681 119 31 7 chr11 62396283 62396729 -86386743 + MER51-int LTR ERV1 1039 1495 -6321 239 229 0 0 chr11 62396745 62396793 -86386679 + MER4A LTR ERV1 51 98 -566 593 145 43 73 chr11 62396798 62396984 -86386488 + MER4A LTR ERV1 276 514 -150 587 213 21 21 chr11 62396990 62397178 -86386294 + MER51-int LTR ERV1 1792 1979 -5837 647 0 0 0 chr11 62397355 62397433 -86386039 - AluYa5/8 SINE Alu -4 307 230 376 251 164 18 chr11 62399234 62399405 -86384067 + MIR SINE MIR 2 197 -65 395 302 236 10 chr11 62400248 62400549 -86382923 - L2 LINE L2 0 3313 2945 2100 108 0 7 chr11 62400713 62401008 -86382464 - AluSg SINE Alu -17 293 1 2074 142 36 3 chr11 62401173 62401504 -86381968 + MER2 DNA MER2_type 3 344 0 1931 136 17 0 chr11 62401544 62401846 -86381626 - AluSx SINE Alu -5 307 1 429 299 55 19 chr11 62403798 62404000 -86379472 + MIR SINE MIR 4 214 -48 339 315 89 20 chr11 62404047 62404193 -86379279 - MIR SINE MIR -73 189 34 905 220 5 24 chr11 62405187 62405396 -86378076 + MER3 DNA MER1_type 5 209 0 224 370 93 0 chr11 62405397 62405505 -86377967 - MIR3 SINE MIR -49 159 42 555 347 27 0 chr11 62405686 62405908 -86377564 + MIR SINE MIR 29 256 -6 303 256 7 80 chr11 62405963 62406100 -86377372 - L2 LINE L2 -222 3050 2924 182 250 13 26 chr11 62406173 62406249 -86377223 - L2 LINE L2 -640 2674 2600 2233 106 0 35 chr11 62406290 62406602 -86376870 - AluSx SINE Alu -11 301 1 262 223 99 74 chr11 62406639 62406760 -86376712 - MIR SINE MIR -31 231 108 229 222 196 0 chr11 62407323 62407438 -86376034 + MIR SINE MIR 11 151 -65 295 187 0 40 chr11 62407675 62407750 -86375722 - LTR16C LTR ERVL -1 490 419 219 286 64 29 chr11 62408435 62408575 -86374897 + L2 LINE L2 2818 2962 -310 1312 151 44 0 chr11 62408729 62408934 -86374538 + AluJo SINE Alu 86 299 -13 3770 189 89 94 chr11 62408936 62409283 -86374189 - Charlie1a DNA MER1_type -1378 1383 1036 2126 120 0 7 chr11 62409283 62409575 -86373897 + AluSc SINE Alu 1 290 -19 3770 189 89 94 chr11 62409575 62409765 -86373707 - Charlie1a DNA MER1_type -1725 1036 847 2146 86 18 4 chr11 62409765 62410077 -86373395 - AluSx SINE Alu 0 316 1 3770 189 89 94 chr11 62410077 62410325 -86373147 - Charlie1a DNA MER1_type -1914 847 599 2421 46 42 0 chr11 62410325 62410610 -86372862 - AluY SINE Alu -14 297 1 3770 189 89 94 chr11 62410610 62410916 -86372556 - Charlie1a DNA MER1_type -2162 599 295 2085 130 10 3 chr11 62410916 62411209 -86372263 + AluSx SINE Alu 4 298 -14 3770 189 89 94 chr11 62411209 62411503 -86371969 - Charlie1a DNA MER1_type -2466 295 1 755 85 0 2 chr11 62411585 62411833 -86371639 + AluSx SINE Alu 1 296 -13 328 333 0 0 chr11 62411916 62412003 -86371469 + L2 LINE L2 3225 3311 -2 248 371 28 42 chr11 62411974 62412117 -86371355 - L2 LINE L2 -7 3265 3125 * 733 92 10 0 chr11 62414461 62414559 -86368913 - AluSq/x SINE Alu -182 131 33 350 166 51 166 chr11 62417057 62417232 -86366240 - L1ME LINE L1 -5443 1100 946 374 312 44 21 chr11 62417840 62418132 -86365340 - L1ME LINE L1 -5879 651 30 2099 131 3 10 chr11 62418563 62418875 -86364597 + AluSx SINE Alu 1 310 -2 556 228 269 10 chr11 62420472 62420665 -86362807 + MIR SINE MIR 16 258 -4 438 267 144 14 chr11 62420789 62420935 -86362537 - MIR SINE MIR -26 236 72 873 163 0 0 chr11 62421141 62421270 -86362202 - FLAM_C SINE Alu -4 129 1 2748 224 60 17 chr11 62421272 62422150 -86361322 - L1M4 LINE L1 -939 5207 4292 * 3314 245 123 45 chr11 62422148 62422870 -86360602 + L1M4 LINE L1 2974 3638 -2508 1906 160 4 0 chr11 62422870 62423175 -86360297 - AluSx SINE Alu 0 306 1 3314 245 123 45 chr11 62423175 62423930 -86359542 + L1M4 LINE L1 3638 4332 -1814 1555 154 103 0 chr11 62423930 62424203 -86359269 - AluSg SINE Alu -9 301 1 3314 245 123 45 chr11 62424203 62424276 -86359196 + L1M4 LINE L1 4332 4398 -1748 1676 181 32 0 chr11 62424276 62424553 -86358919 + AluJb SINE Alu 2 287 -25 3314 245 123 45 chr11 62424553 62424652 -86358820 + L1M4 LINE L1 4398 4756 -1390 1102 90 0 0 chr11 62424654 62424799 -86358673 + LTR8 LTR ERV1 547 691 0 632 143 9 0 chr11 62424799 62424904 -86358568 + HUERS-P1 LTR ERV1 1 106 -6157 1089 222 56 0 chr11 62424904 62425192 -86358280 + L1M4 LINE L1 4746 5049 -1097 3280 134 13 2 chr11 62425197 62425720 -86357752 + L1PA7 LINE L1 5 533 -5928 26469 80 12 3 chr11 62425720 62430324 -86353148 + L1PA7 LINE L1 1825 6469 0 622 206 43 0 chr11 62430326 62430467 -86353005 + L1M4 LINE L1 5042 5188 -958 2347 115 3 0 chr11 62431322 62431634 -86351838 - AluSq SINE Alu 0 313 1 255 31 0 0 chr11 62432375 62432407 -86351065 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 2188 105 0 16 chr11 62432409 62432714 -86350758 - AluSx SINE Alu -12 300 1 192 77 0 0 chr11 62432924 62432950 -86350522 + (T)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr11 62433573 62433595 -86349877 + AT_rich Low_complexity Low_complexity 1 22 0 241 328 29 58 chr11 62433723 62433894 -86349578 - MIR SINE MIR -9 253 88 625 195 0 9 chr11 62435286 62435399 -86348073 - AluJ SINE Alu -9 303 192 906 168 0 7 chr11 62435399 62435542 -86347930 - AluJ SINE Alu -170 142 1 254 177 0 81 chr11 62435578 62435640 -86347832 + FLAM SINE Alu 76 132 -1 2890 157 31 34 chr11 62435756 62436341 -86347131 - L1MB3 LINE L1 -1 6182 5600 1116 197 119 0 chr11 62436342 62436611 -86346861 - L1MB3 LINE L1 -1314 4832 4532 192 77 0 0 chr11 62438331 62438357 -86345115 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 2481 74 3 0 chr11 62438364 62438673 -86344799 - AluSx SINE Alu -2 310 1 215 284 21 95 chr11 62439297 62439392 -86344080 - MIR SINE MIR -83 125 38 2193 111 3 16 chr11 62439532 62439839 -86343633 + AluSc SINE Alu 1 303 -6 252 0 0 0 chr11 62441233 62441261 -86342211 + (TTCC)n Simple_repeat Simple_repeat 2 29 0 2294 106 0 7 chr11 62441272 62441574 -86341898 - AluSg SINE Alu -10 300 1 2113 110 0 21 chr11 62442284 62442601 -86340871 + AluSx SINE Alu 1 311 0 1819 173 0 40 chr11 62442667 62442990 -86340482 - AluJo SINE Alu -2 310 1 189 323 0 32 chr11 62443085 62443147 -86340325 + L3b LINE CR1 1511 1570 -13 799 240 99 22 chr11 62443270 62443583 -86339889 - Charlie2 DNA MER1_type -546 2316 1980 4488 132 62 32 chr11 62443583 62443930 -86339542 - L1MA6 LINE L1 0 6300 5965 2408 99 0 10 chr11 62443930 62444244 -86339228 - AluSx SINE Alu -1 311 1 4488 132 62 32 chr11 62444244 62444551 -86338921 - L1MA6 LINE L1 -335 5965 5611 1228 211 4 25 chr11 62444551 62444793 -86338679 - MER8 DNA MER2_type -2 237 1 4488 132 62 32 chr11 62444793 62445002 -86338470 - L1MA6 LINE L1 -689 5611 5410 346 270 17 0 chr11 62445049 62445164 -86338308 - Charlie2 DNA MER1_type -862 2000 1884 307 289 116 26 chr11 62445170 62445402 -86338070 - Charlie2 DNA MER1_type -2464 318 66 590 256 43 12 chr11 62445820 62445984 -86337488 - MIR SINE MIR -12 250 82 582 294 62 73 chr11 62446059 62446443 -86337029 - L1M4 LINE L1 -1534 4612 4233 5320 118 28 6 chr11 62446570 62447397 -86336075 - L1PA15 LINE L1 0 6816 5972 252 77 0 0 chr11 62447397 62447436 -86336036 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 688 179 0 137 chr11 62447438 62447606 -86335866 - AluJb SINE Alu -31 281 137 15309 213 27 23 chr11 62447606 62450506 -86332966 - L1PA15 LINE L1 -815 5982 3094 1668 176 26 29 chr11 62450506 62450674 -86332798 - AluSx SINE Alu -1 311 143 2054 141 0 13 chr11 62450674 62450979 -86332493 - AluSx SINE Alu -11 301 1 1668 176 26 29 chr11 62450979 62451122 -86332350 - AluSx SINE Alu -169 143 1 15309 213 27 23 chr11 62451122 62451949 -86331523 - L1PA15 LINE L1 -3703 3094 2271 2377 94 0 7 chr11 62451949 62452246 -86331226 + AluSx SINE Alu 1 295 -17 15309 213 27 23 chr11 62452246 62452678 -86330794 - L1PA15 LINE L1 -4526 2271 1842 4797 70 0 0 chr11 62452678 62453265 -86330207 - LTR14C LTR ERVK 0 587 1 15309 213 27 23 chr11 62453265 62453421 -86330051 - L1PA15 LINE L1 -4955 1842 1688 1483 108 0 0 chr11 62453421 62453607 -86329865 - AluSc SINE Alu -123 186 1 15309 213 27 23 chr11 62453607 62453935 -86329537 - L1PA15 LINE L1 -5109 1688 1285 23 68 0 0 chr11 62454098 62454142 -86329330 + AT_rich Low_complexity Low_complexity 1 44 0 * 397 158 30 133 chr11 62454103 62454142 -86329330 - L1MA7 LINE L1 0 6291 6250 2134 155 0 0 chr11 62454142 62454445 -86329027 - AluSx SINE Alu -9 303 1 397 158 30 133 chr11 62454445 62454570 -86328902 - L1MA7 LINE L1 -41 6250 6144 1641 172 3 10 chr11 62454571 62454879 -86328593 - AluJo SINE Alu -3 309 4 1951 162 26 9 chr11 62455228 62455567 -86327905 - MER7A DNA MER2_type 0 346 4 433 275 36 7 chr11 62455671 62455721 -86327751 - MIR SINE MIR 0 262 215 2146 100 3 3 chr11 62455721 62456020 -86327452 - AluSq SINE Alu -14 299 1 433 275 36 7 chr11 62456020 62456036 -86327436 - MIR SINE MIR -47 215 201 216 0 0 0 chr11 62456036 62456060 -86327412 + (CA)n Simple_repeat Simple_repeat 2 25 0 433 275 36 7 chr11 62456060 62456130 -86327342 - MIR SINE MIR -61 201 121 315 278 69 52 chr11 62456385 62456558 -86326914 + MER5B DNA MER1_type 3 178 0 190 262 60 0 chr11 62458058 62458142 -86325330 + MIR SINE MIR 46 134 -128 215 192 19 19 chr11 62458305 62458357 -86325115 - MIR3 SINE MIR -7 201 150 330 276 72 55 chr11 62459252 62459433 -86324039 + MIR3 SINE MIR 7 190 -18 953 238 84 100 chr11 62461736 62461798 -86321674 - MLT1D LTR MaLR -4 501 440 2120 109 0 0 chr11 62461798 62462100 -86321372 + AluSc SINE Alu 1 302 -7 8246 42 1 1 chr11 62462101 62463070 -86320402 + LTR5 LTR ERVK 1 969 0 953 238 84 100 chr11 62463070 62463514 -86319958 - MLT1D LTR MaLR -64 441 1 2106 101 0 11 chr11 62463881 62464207 -86319265 - AluSp SINE Alu 0 323 1 7041 57 153 0 chr11 62464727 62465662 -86317810 - L1PA7 LINE L1 -2 6152 5186 225 299 26 39 chr11 62465938 62466015 -86317457 + MER5B DNA MER1_type 1 76 -102 2120 80 30 7 chr11 62466305 62466607 -86316865 + AluSc SINE Alu 1 309 0 667 191 135 11 chr11 62466643 62466821 -86316651 + L1MB4 LINE L1 5981 6180 0 706 259 157 59 chr11 62467605 62467855 -86315617 + HAL1 LINE L1 1025 1249 -1258 1714 166 32 0 chr11 62467855 62468139 -86315333 + AluJb SINE Alu 1 293 -19 706 259 157 59 chr11 62468139 62468564 -86314908 + HAL1 LINE L1 1249 1766 -741 247 267 60 26 chr11 62468856 62468972 -86314500 - L2 LINE L2 -221 3051 2932 609 212 24 35 chr11 62469118 62469288 -86314184 - MER20 DNA MER1_type 0 219 52 1962 104 14 21 chr11 62469755 62470043 -86313429 + AluSx SINE Alu 6 291 -21 398 305 77 9 chr11 62470821 62470969 -86312503 + MIR SINE MIR 11 182 -80 408 234 47 31 chr11 62470969 62471097 -86312375 - MER94 DNA DNA -3 131 2 398 305 77 9 chr11 62471097 62471181 -86312291 + MIR SINE MIR 182 259 -3 761 157 83 25 chr11 62471182 62471386 -86312086 + L1MA9 LINE L1 6097 6312 0 1956 138 0 3 chr11 62471512 62471810 -86311662 + AluJb SINE Alu 1 297 -15 446 253 191 16 chr11 62472066 62472260 -86311212 - MIR SINE MIR -21 241 14 180 111 0 0 chr11 62473534 62473561 -86309911 + (T)n Simple_repeat Simple_repeat 1 27 0 553 311 70 42 chr11 62473681 62474067 -86309405 + L2 LINE L2 2889 3285 -28 2059 92 3 10 chr11 62474170 62474298 -86309174 + AluSg SINE Alu 1 128 -182 207 0 0 0 chr11 62474298 62474321 -86309151 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2059 92 3 10 chr11 62474321 62474485 -86308987 + AluSg SINE Alu 128 291 -19 2254 85 0 0 chr11 62474527 62474820 -86308652 + AluSx SINE Alu 4 296 -16 217 279 29 58 chr11 62474831 62474935 -86308537 - MIR SINE MIR -113 149 49 22 35 0 0 chr11 62475096 62475125 -86308347 + AT_rich Low_complexity Low_complexity 1 29 0 2120 109 0 13 chr11 62475236 62475569 -86307903 + AluSx SINE Alu 1 312 0 314 239 33 0 chr11 62475707 62475799 -86307673 + GA-rich Low_complexity Low_complexity 1 95 0 261 0 0 0 chr11 62477069 62477098 -86306374 + (TG)n Simple_repeat Simple_repeat 2 30 0 1648 142 10 51 chr11 62477098 62477394 -86306078 - AluJo SINE Alu -28 284 1 21 0 0 0 chr11 62477808 62477829 -86305643 + AT_rich Low_complexity Low_complexity 1 21 0 219 308 0 0 chr11 62478239 62478291 -86305181 + polypurine Low_complexity Low_complexity 1 52 0 1154 148 6 0 chr11 62478462 62478638 -86304834 - AluSx SINE Alu -135 177 1 180 200 0 0 chr11 62478764 62478804 -86304668 + CT-rich Low_complexity Low_complexity 2 41 0 1380 192 25 11 chr11 62479397 62479673 -86303799 - AluJo SINE Alu -30 282 3 1801 128 16 20 chr11 62479680 62479986 -86303486 - AluSq SINE Alu -8 305 1 1149 166 16 5 chr11 62480154 62480341 -86303131 + MER49 LTR ERV1 1 189 -734 1736 131 7 11 chr11 62480362 62480644 -86302828 - AluSc SINE Alu -26 283 3 1620 127 101 4 chr11 62480655 62480931 -86302541 - AluJb SINE Alu -9 303 1 771 123 120 20 chr11 62480937 62481145 -86302327 - LTR49-int LTR ERV1 -2432 4362 3680 265 229 114 34 chr11 62481179 62481403 -86302069 - LTR49-int LTR ERV1 -1937 3624 3420 1798 161 3 0 chr11 62481403 62481702 -86301770 - AluSx SINE Alu -11 301 2 265 229 114 34 chr11 62481702 62481719 -86301753 - LTR49-int LTR ERV1 -2141 3420 2733 2041 125 10 0 chr11 62481849 62482146 -86301326 + AluSx SINE Alu 1 300 -12 12784 99 42 23 chr11 62482146 62482587 -86300885 - LTR49-int LTR ERV1 -691 5907 5476 2174 96 0 13 chr11 62482587 62482888 -86300584 + AluSp SINE Alu 1 297 -16 12784 99 42 23 chr11 62482888 62484478 -86298994 - LTR49-int LTR ERV1 -1122 5476 3836 4411 122 70 24 chr11 62484476 62485380 -86298092 - LTR49-int LTR ERV1 -2917 3681 2737 * 1327 135 127 4 chr11 62485380 62485609 -86297863 + LTR8 LTR ERV1 1 257 -434 2901 85 59 6 chr11 62485609 62486081 -86297391 - LTR49-int LTR ERV1 -4103 2495 1999 2133 122 0 3 chr11 62486081 62486385 -86297087 + AluSx SINE Alu 1 303 -9 955 245 24 4 chr11 62486541 62486790 -86296682 + HAL1 LINE L1 1584 1837 -670 1362 177 16 59 chr11 62486864 62487038 -86296434 - AluJb SINE Alu -12 300 120 342 0 0 0 chr11 62487038 62487076 -86296396 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1979 104 4 4 chr11 62487076 62487354 -86296118 - AluSc SINE Alu -30 279 2 1362 177 16 59 chr11 62487354 62487483 -86295989 - AluJb SINE Alu -190 122 9 290 301 7 34 chr11 62487495 62487641 -86295831 + HAL1 LINE L1 1927 2068 -439 379 294 180 12 chr11 62487644 62487889 -86295583 + HAL1 LINE L1 2222 2507 0 271 232 30 10 chr11 62487907 62488006 -86295466 + L1ME4a LINE L1 5835 5935 -186 1793 154 0 3 chr11 62488072 62488357 -86295115 - AluJo SINE Alu -23 289 6 22 99 0 0 chr11 62488373 62488444 -86295028 + AT_rich Low_complexity Low_complexity 1 71 0 405 231 0 0 chr11 62488471 62488549 -86294923 - FLAM SINE Alu -12 121 44 2007 140 0 3 chr11 62489740 62490048 -86293424 - AluSx SINE Alu -5 307 1 225 308 47 0 chr11 62490049 62490156 -86293316 - L1ME LINE L1 -272 5892 5781 308 152 0 0 chr11 62490160 62490206 -86293266 + L1MC4 LINE L1 6658 6703 -1339 1555 109 112 4 chr11 62490207 62490474 -86292998 - AluSq SINE Alu -15 298 3 21 36 0 0 chr11 62490476 62490504 -86292968 + AT_rich Low_complexity Low_complexity 1 28 0 761 140 18 0 chr11 62490510 62490624 -86292848 - FLAM_C SINE Alu -25 118 3 23 33 0 0 chr11 62490666 62490696 -86292776 + AT_rich Low_complexity Low_complexity 1 30 0 464 250 17 81 chr11 62490795 62490967 -86292505 + MER5B DNA MER1_type 18 178 0 2042 107 4 0 chr11 62491065 62491374 -86292098 + AluSq SINE Alu 1 310 0 743 134 6 116 chr11 62491560 62491732 -86291740 + MER21A LTR ERV1 13 165 -766 288 196 0 0 chr11 62491759 62491805 -86291667 + MER39 LTR ERV1 267 312 -395 2254 54 0 4 chr11 62492071 62492347 -86291125 - AluY SINE Alu -28 283 9 457 253 58 32 chr11 62492382 62492536 -86290936 - MLT1D LTR MaLR -347 158 1 206 246 15 62 chr11 62493466 62493531 -86289941 + MIR SINE MIR 152 213 -49 304 250 13 26 chr11 62493711 62493787 -86289685 + MER5B DNA MER1_type 1 75 -103 526 224 84 0 chr11 62494125 62494268 -86289204 + L1MB4 LINE L1 5981 6135 -45 1919 122 16 26 chr11 62494275 62494587 -86288885 + AluSc SINE Alu 1 309 0 313 41 0 0 chr11 62495020 62495069 -86288403 - AluSp SINE Alu 0 303 255 1597 81 5 5 chr11 62495069 62495278 -86288194 - AluSp SINE Alu -104 209 1 635 218 109 66 chr11 62495795 62496098 -86287374 + HAL1 LINE L1 1456 1771 -736 328 318 95 11 chr11 62496120 62496309 -86287163 + HAL1 LINE L1 2303 2507 0 247 256 56 32 chr11 62496630 62496755 -86286717 - L2 LINE L2 -213 3059 2932 858 199 41 25 chr11 62496844 62497040 -86286432 - MER20 DNA MER1_type 0 219 21 3061 127 2 7 chr11 62497957 62498390 -86285082 + LTR3 LTR ERVK 1 431 -1 13542 105 31 2 chr11 62498395 62500312 -86283160 + HERVK3 LTR ERVK 39 2011 -5232 1637 116 4 0 chr11 62500312 62500537 -86282935 - LTR3 LTR ERVK -206 226 1 2036 86 0 14 chr11 62500687 62500965 -86282507 + AluY SINE Alu 34 307 -4 1988 98 14 17 chr11 62501065 62501360 -86282112 - AluSq SINE Alu -19 294 1 247 108 0 0 chr11 62501378 62501415 -86282057 - MLT1C LTR MaLR -233 234 198 2152 106 7 0 chr11 62502061 62502363 -86281109 - AluSx SINE Alu -8 304 1 182 244 45 24 chr11 62502435 62502511 -86280961 - MIR SINE MIR -98 110 33 2192 102 0 0 chr11 62502965 62503260 -86280212 + AluSq SINE Alu 1 295 -18 1927 119 0 53 chr11 62503590 62503910 -86279562 + AluSx SINE Alu 6 308 -4 371 173 0 40 chr11 62504350 62504425 -86279047 - FLAM_A SINE Alu -16 117 46 2508 165 16 44 chr11 62504425 62504960 -86278512 - MER41B LTR ERV1 -12 597 111 2114 121 40 44 chr11 62505024 62505120 -86278352 - THE1C LTR MaLR 0 428 333 1860 122 0 8 chr11 62505120 62505382 -86278090 - AluSx SINE Alu -11 301 42 2114 121 40 44 chr11 62505382 62505713 -86277759 - THE1C LTR MaLR -95 333 1 2081 242 51 54 chr11 62505713 62506307 -86277165 + MER21B LTR ERV1 157 750 -113 4414 164 54 34 chr11 62506307 62507192 -86276280 - MER4D LTR ERV1 0 903 1 2081 242 51 54 chr11 62507192 62507249 -86276223 + MER21B LTR ERV1 750 806 -57 1910 116 17 30 chr11 62507360 62507661 -86275811 + AluSq SINE Alu 1 297 -16 1543 186 25 11 chr11 62507666 62507951 -86275521 + AluJo SINE Alu 1 289 -23 180 200 0 0 chr11 62508545 62508585 -86274887 + GA-rich Low_complexity Low_complexity 2 41 0 2149 134 3 0 chr11 62508710 62509009 -86274463 + AluSx SINE Alu 1 300 -12 1090 171 28 108 chr11 62509272 62509412 -86274060 - LTR56 LTR ERV1 0 437 287 2086 106 7 7 chr11 62509412 62509738 -86273734 - AluSg SINE Alu 0 326 1 1090 171 28 108 chr11 62509738 62509991 -86273481 - LTR56 LTR ERV1 -150 287 99 1637 127 0 40 chr11 62509995 62510248 -86273224 + AluSg SINE Alu 30 272 -38 2043 125 3 7 chr11 62510252 62510547 -86272925 - AluJo SINE Alu -18 294 1 2009 131 10 13 chr11 62510815 62511128 -86272344 - AluSx SINE Alu 0 312 1 1849 158 0 16 chr11 62511387 62511698 -86271774 + AluJb SINE Alu 1 306 -6 216 0 0 0 chr11 62511831 62511855 -86271617 + (TG)n Simple_repeat Simple_repeat 1 24 0 360 111 0 0 chr11 62511855 62511909 -86271563 + (TA)n Simple_repeat Simple_repeat 1 54 0 250 224 35 0 chr11 62511968 62512026 -86271446 + LTR10B-int LTR ERV1 4434 4493 -1838 387 89 0 0 chr11 62512221 62512277 -86271195 + (TA)n Simple_repeat Simple_repeat 1 56 0 216 0 0 0 chr11 62512277 62512301 -86271171 + (CA)n Simple_repeat Simple_repeat 1 24 0 386 187 0 0 chr11 62512455 62512530 -86270942 - AluJb SINE Alu -15 287 213 511 157 43 43 chr11 62512637 62512752 -86270720 + LTR10B-int LTR ERV1 6535 6649 0 1338 238 135 30 chr11 62512752 62513247 -86270225 + LTR10B LTR ERV1 1 547 0 2943 108 29 2 chr11 62513247 62513692 -86269780 + MER51-int LTR ERV1 1039 1495 -6321 237 229 0 0 chr11 62513708 62513756 -86269716 + MER4A LTR ERV1 51 98 -566 728 139 59 67 chr11 62513761 62513963 -86269509 + MER4A LTR ERV1 276 534 -130 9060 93 61 14 chr11 62513963 62514750 -86268722 + MER51B-int LTR ERV1 1802 2551 -5265 2107 119 0 28 chr11 62514750 62515068 -86268404 + AluSg SINE Alu 1 309 -1 9060 93 61 14 chr11 62515068 62515738 -86267734 + MER51B-int LTR ERV1 2551 3327 -4489 1810 137 78 71 chr11 62515720 62515850 -86267622 + MER51B-int LTR ERV1 2829 2957 -2989 * 2055 131 0 13 chr11 62515850 62516163 -86267309 + AluSc SINE Alu 1 309 0 1810 137 78 71 chr11 62516163 62516515 -86266957 + MER51B-int LTR ERV1 2957 3172 -2774 * 2035 134 49 19 chr11 62516510 62516900 -86266572 + MER51B-int LTR ERV1 2341 4564 -1699 * 7987 130 28 5 chr11 62516877 62518532 -86264940 + MER51B-int LTR ERV1 5407 7147 -390 621 207 22 7 chr11 62518534 62518669 -86264803 + LTR54B LTR ERV1 5 141 -357 2012 156 64 3 chr11 62518669 62518995 -86264477 + MER51B-int LTR ERV1 7470 7815 -1 2491 111 50 0 chr11 62518997 62519356 -86264116 + MER51B LTR ERV1 1 377 0 1685 169 4 0 chr11 62519356 62519616 -86263856 + AluJb SINE Alu 19 279 -33 2364 107 3 0 chr11 62520341 62520651 -86262821 - AluSx SINE Alu -1 311 1 1432 149 7 2 chr11 62520712 62520982 -86262490 - L1PA15-16 LINE L1 -3836 3013 2738 1406 234 44 3 chr11 62520972 62521335 -86262137 + L1P LINE L1 4779 5156 -990 * 500 128 13 0 chr11 62522588 62522666 -86260806 + MADE1 DNA Mariner 1 79 -1 5835 138 29 2 chr11 62523247 62524468 -86259004 + L1PB1 LINE L1 4893 6148 -3 228 232 85 0 chr11 62524479 62524561 -86258911 - L1MC1 LINE L1 -281 6052 5964 2194 184 14 2 chr11 62524676 62525095 -86258377 - L1MC1 LINE L1 -430 5903 5480 187 361 28 0 chr11 62525349 62525457 -86258015 + MIR SINE MIR 73 183 -79 2286 232 46 48 chr11 62525849 62526573 -86256899 - L1MB2 LINE L1 0 6171 5450 1025 121 3 0 chr11 62526863 62527153 -86256319 + (TG)n Simple_repeat Simple_repeat 1 291 0 256 319 97 9 chr11 62527678 62527791 -86255681 - L2 LINE L2 0 3272 3150 341 271 24 65 chr11 62528412 62528582 -86254890 - MIR SINE MIR -13 249 87 321 293 32 25 chr11 62528812 62528969 -86254503 + MER5B DNA MER1_type 3 160 -18 6131 48 0 0 chr11 62529028 62529799 -86253673 - L1PA4 LINE L1 -2360 3786 3016 967 50 8 0 chr11 62529799 62529920 -86253552 + L1PA4 LINE L1 3778 3899 -2247 5225 35 0 0 chr11 62529920 62530527 -86252945 + L1PA4 LINE L1 5548 6155 0 226 253 13 0 chr11 62531958 62532033 -86251439 + MIR SINE MIR 46 121 -141 1476 213 0 14 chr11 62532122 62532399 -86251073 + AluJb SINE Alu 1 273 -39 516 263 67 38 chr11 62534884 62535124 -86248348 - MLT1D LTR MaLR -4 501 224 189 0 0 0 chr11 62535171 62535192 -86248280 + (T)n Simple_repeat Simple_repeat 1 21 0 227 275 202 21 chr11 62535424 62535657 -86247815 + HAL1 LINE L1 1383 1657 -850 2623 53 0 0 chr11 62535664 62535968 -86247504 - AluY SINE Alu -6 305 2 315 313 12 19 chr11 62536105 62536265 -86247207 + L1MEc LINE L1 22 180 -6216 725 126 36 0 chr11 62536266 62536377 -86247095 + AluSq SINE Alu 74 188 -125 2414 63 0 3 chr11 62536473 62536803 -86246669 - AluSx SINE Alu 0 329 1 498 33 0 0 chr11 62536803 62536863 -86246609 + (TTA)n Simple_repeat Simple_repeat 3 62 0 2245 87 0 7 chr11 62536864 62537152 -86246320 - AluSx SINE Alu -26 286 1 21 0 0 0 chr11 62537412 62537433 -86246039 + AT_rich Low_complexity Low_complexity 1 21 0 2421 82 0 19 chr11 62537883 62538198 -86245274 - AluSc SINE Alu 0 309 1 1926 129 21 0 chr11 62538201 62538488 -86244984 - AluSx SINE Alu -19 293 1 2171 149 89 56 chr11 62538511 62539026 -86244446 - Cheshire DNA MER1_type -2 2418 1887 578 171 48 0 chr11 62539031 62539136 -86244336 + MER66A LTR ERV1 6 115 -363 6106 76 13 16 chr11 62539136 62539888 -86243584 + L1PA12 LINE L1 5327 6078 -90 1600 127 97 86 chr11 62539888 62540259 -86243213 - THE1C LTR MaLR 0 375 1 6106 76 13 16 chr11 62540259 62540339 -86243133 + L1PA12 LINE L1 6078 6157 -11 1584 159 166 7 chr11 62540339 62540647 -86242825 + MER66B LTR ERV1 100 456 -30 4906 183 17 1 chr11 62540683 62541571 -86241901 - Cheshire DNA MER1_type -612 1808 907 1347 194 136 39 chr11 62541571 62541953 -86241519 - MLT1C LTR MaLR 0 467 49 2751 165 33 31 chr11 62542013 62542078 -86241394 - Cheshire DNA MER1_type -1509 911 848 1705 159 20 43 chr11 62542078 62542380 -86241092 - AluJo SINE Alu -17 295 1 2751 165 33 31 chr11 62542380 62542832 -86240640 - Cheshire DNA MER1_type -1572 848 390 2331 116 0 0 chr11 62542832 62543142 -86240330 + AluSg SINE Alu 1 310 0 2751 165 33 31 chr11 62543142 62543194 -86240278 - Cheshire DNA MER1_type -2030 390 340 25 0 0 0 chr11 62543294 62543319 -86240153 + GC_rich Low_complexity Low_complexity 1 25 0 225 0 0 0 chr11 62543339 62543364 -86240108 + (T)n Simple_repeat Simple_repeat 1 25 0 5020 180 22 47 chr11 62543462 62544115 -86239357 + L1PA16 LINE L1 4415 5083 -1083 369 174 14 0 chr11 62544115 62544184 -86239288 + MER41D LTR ERV1 42 111 -446 5020 180 22 47 chr11 62544184 62545256 -86238216 + L1PA16 LINE L1 5083 6159 -7 1917 139 14 3 chr11 62545317 62545604 -86237868 + AluSx SINE Alu 2 291 -21 242 345 54 6 chr11 62545604 62545772 -86237700 + HAL1 LINE L1 2328 2503 -4 2763 157 0 0 chr11 62546163 62546589 -86236883 + MER41D LTR ERV1 1 426 -131 1633 173 46 11 chr11 62547700 62547984 -86235488 - AluSx SINE Alu -16 296 3 264 265 126 43 chr11 62548200 62548282 -86235190 - MIR SINE MIR -3 259 185 355 232 56 32 chr11 62548282 62548407 -86235065 + MER94 DNA DNA 4 131 -3 264 265 126 43 chr11 62548407 62548554 -86234918 - MIR SINE MIR -77 185 11 1122 209 163 11 chr11 62548746 62549023 -86234449 - Cheshire DNA MER1_type -2101 319 1 2307 130 8 28 chr11 62549058 62549412 -86234060 - MSTC LTR MaLR 0 428 82 2226 132 0 0 chr11 62549480 62549784 -86233688 - AluSx SINE Alu -6 306 3 677 182 65 116 chr11 62549894 62550030 -86233442 - MER67C LTR ERV1 -192 322 228 3844 108 0 11 chr11 62550030 62550578 -86232894 - L1PA15 LINE L1 -6 6159 5618 677 182 65 116 chr11 62550578 62550691 -86232781 - MER67C LTR ERV1 -286 228 111 1686 164 0 54 chr11 62550706 62551023 -86232449 - AluJb SINE Alu -12 300 1 285 231 54 69 chr11 62551375 62551505 -86231967 + Charlie2 DNA MER1_type 1 128 -2654 1690 95 8 37 chr11 62551634 62551877 -86231595 - AluSx SINE Alu -76 236 1 374 75 0 0 chr11 62551964 62552017 -86231455 - AluSp/q SINE Alu -3 300 248 2473 94 3 0 chr11 62552049 62552358 -86231114 - AluSp SINE Alu -3 310 1 367 321 52 0 chr11 62552365 62552499 -86230973 + Charlie2 DNA MER1_type 182 322 -2540 319 228 30 20 chr11 62552483 62552584 -86230888 + Charlie2 DNA MER1_type 1836 1937 -925 * 186 270 16 32 chr11 62552796 62552859 -86230613 - MIR SINE MIR -57 151 90 681 213 87 53 chr11 62552861 62553068 -86230404 - MER20 DNA MER1_type -4 215 2 2134 84 3 23 chr11 62553205 62553504 -86229968 - AluSq SINE Alu -20 293 1 22 0 0 0 chr11 62553512 62553534 -86229938 + AT_rich Low_complexity Low_complexity 1 22 0 564 226 97 56 chr11 62554411 62554606 -86228866 + MER58A DNA MER1_type 4 206 -18 1087 187 72 0 chr11 62554899 62555206 -86228266 - L1MC/D LINE L1 -719 5523 5198 27 0 0 0 chr11 62555206 62555233 -86228239 + AT_rich Low_complexity Low_complexity 1 27 0 1206 154 8 69 chr11 62755234 62755494 -86027978 + AluSq SINE Alu 69 312 -1 230 65 109 0 chr11 62756324 62756370 -86027102 + L1M3 LINE L1 5554 5604 -579 2010 141 0 3 chr11 62756374 62756673 -86026799 + AluJb SINE Alu 1 298 -14 2198 120 0 0 chr11 62758321 62758622 -86024850 - AluSx SINE Alu -11 301 1 620 167 111 0 chr11 62758710 62758818 -86024654 + FLAM_C SINE Alu 5 124 -9 2095 108 0 7 chr11 62759320 62759640 -86023832 + AluSx SINE Alu 1 318 0 822 203 0 0 chr11 62760797 62760935 -86022537 - FLAM_C SINE Alu -5 138 1 1949 147 3 10 chr11 62760935 62761234 -86022238 - AluSx SINE Alu -15 297 1 2329 86 0 3 chr11 62762401 62762703 -86020769 - AluSx SINE Alu -9 303 3 694 192 13 26 chr11 62762717 62762868 -86020604 + SVA Other Other 455 603 -783 2190 94 7 0 chr11 62763112 62763409 -86020063 - AluSg SINE Alu -11 299 1 1298 189 57 57 chr11 62763412 62763530 -86019942 - AluJo SINE Alu -16 296 179 2282 97 3 0 chr11 62763530 62763830 -86019642 - AluSp SINE Alu -12 301 1 1298 189 57 57 chr11 62763830 62764007 -86019465 - AluJo SINE Alu -132 180 1 1871 136 0 34 chr11 62764143 62764263 -86019209 + AluSx SINE Alu 23 146 -166 2201 71 11 11 chr11 62764263 62764569 -86018903 + AluSp SINE Alu 2 307 0 1871 136 0 34 chr11 62764569 62764741 -86018731 + AluSx SINE Alu 146 306 -6 427 284 132 5 chr11 62764943 62765147 -86018325 - MER112 DNA MER1_type -1 259 30 878 148 28 50 chr11 62765202 62765365 -86018107 - AluSg/x SINE Alu -17 295 135 1732 157 3 10 chr11 62765365 62765671 -86017801 - AluSx SINE Alu -7 305 2 878 148 28 50 chr11 62765671 62765689 -86017783 - AluSg/x SINE Alu -177 135 118 293 276 83 26 chr11 62765725 62765881 -86017591 - L1MC4 LINE L1 -384 7658 7494 1936 115 49 3 chr11 62768049 62768335 -86015137 - AluSq SINE Alu -10 303 5 2278 57 17 3 chr11 62768349 62768521 -86014951 - AluY SINE Alu -9 302 123 189 0 0 0 chr11 62768521 62768542 -86014930 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 2278 57 17 3 chr11 62768542 62768667 -86014805 - AluY SINE Alu -188 123 1 310 286 31 20 chr11 62770194 62770292 -86013180 + MIR3 SINE MIR 86 184 -24 183 320 269 7 chr11 62771912 62772221 -86011251 - L2 LINE L2 -456 2858 2469 243 291 47 87 chr11 62773276 62773448 -86010024 - MIR3 SINE MIR -31 177 13 278 242 76 0 chr11 62773707 62773773 -86009699 - MIR SINE MIR -112 150 80 222 391 29 7 chr11 62773776 62773914 -86009558 + MIR SINE MIR 83 223 -39 188 188 238 0 chr11 62774213 62774293 -86009179 + L2 LINE L2 1801 1899 -1415 277 271 98 39 chr11 62774632 62774954 -86008518 + L2 LINE L2 2559 2975 -297 2084 113 10 13 chr11 62774954 62775265 -86008207 - AluSx SINE Alu -2 310 1 277 271 98 39 chr11 62775265 62775288 -86008184 + L2 LINE L2 2975 2995 -277 307 256 111 0 chr11 62775356 62775503 -86007969 - L2 LINE L2 -195 3077 2905 1545 144 0 50 chr11 62775958 62776074 -86007398 + AluJb SINE Alu 30 150 -162 2358 89 3 0 chr11 62776074 62776378 -86007094 + AluSq SINE Alu 1 305 -8 1545 144 0 50 chr11 62776378 62776539 -86006933 + AluJb SINE Alu 150 293 -19 2336 94 0 3 chr11 62777332 62777641 -86005831 - AluSx SINE Alu -4 308 1 918 102 7 34 chr11 62778643 62778790 -86004682 - FLAM_C SINE Alu 0 143 1 291 244 77 0 chr11 62778801 62778879 -86004593 - MIR SINE MIR -70 192 109 1793 156 3 17 chr11 62779151 62779287 -86004185 + AluSx SINE Alu 1 137 -175 2291 94 3 0 chr11 62779287 62779594 -86003878 + AluSg SINE Alu 1 308 -2 1793 156 3 17 chr11 62779594 62779758 -86003714 + AluSx SINE Alu 137 297 -15 2333 80 3 6 chr11 62779760 62780073 -86003399 + AluSp SINE Alu 1 312 -1 584 225 111 70 chr11 62780709 62780770 -86002702 + L1ME3 LINE L1 5638 5695 -467 1865 138 0 35 chr11 62780770 62781082 -86002390 + AluJo SINE Alu 1 301 -11 584 225 111 70 chr11 62781082 62781138 -86002334 + L1ME3 LINE L1 5695 5747 -415 2156 113 7 0 chr11 62781138 62781447 -86002025 + AluSx SINE Alu 1 311 -1 584 225 111 70 chr11 62781447 62781572 -86001900 + L1ME3 LINE L1 5747 5891 -271 262 277 180 0 chr11 62781625 62781732 -86001740 + L1ME3 LINE L1 6007 6130 -32 1642 109 20 152 chr11 62781899 62782047 -86001425 + AluSq SINE Alu 1 167 -136 1678 137 3 55 chr11 62782047 62782183 -86001289 + AluJo SINE Alu 13 128 -184 1707 146 25 7 chr11 62782183 62782464 -86001008 + AluJb SINE Alu 13 298 -14 1678 137 3 55 chr11 62782464 62782620 -86000852 + AluJo SINE Alu 128 290 -22 1642 109 20 152 chr11 62782620 62782643 -86000829 + AluSq SINE Alu 167 191 -112 2267 86 0 13 chr11 62782643 62782947 -86000525 + AluY SINE Alu 1 300 -11 1866 141 0 7 chr11 62782949 62783268 -86000204 + AluSg SINE Alu 1 317 0 1642 109 20 152 chr11 62783268 62783440 -86000032 + AluSq SINE Alu 192 303 0 1408 210 138 43 chr11 62783450 62783941 -85999531 + MLT1F1 LTR MaLR 25 562 -5 413 336 140 8 chr11 62784085 62784350 -85999122 + L2 LINE L2 3013 3312 -1 274 283 35 69 chr11 62785386 62785531 -85997941 + MIR3 SINE MIR 38 177 -31 288 324 147 0 chr11 62786040 62786176 -85997296 - MIR SINE MIR -70 192 37 323 254 9 61 chr11 62786221 62786335 -85997137 + MIR SINE MIR 86 193 -69 275 356 34 8 chr11 62788539 62788657 -85994815 + MIR SINE MIR 113 233 -29 1848 153 14 0 chr11 62789846 62790127 -85993345 + AluJb SINE Alu 1 285 -27 1635 109 0 5 chr11 62790159 62790379 -85993093 + AluSx SINE Alu 1 219 -93 807 157 0 0 chr11 62790379 62790500 -85992972 + AluJb SINE Alu 188 308 -4 1826 155 3 23 chr11 62790519 62790823 -85992649 + AluJb SINE Alu 9 306 -6 184 122 20 61 chr11 62790953 62791051 -85992421 + (TG)n Simple_repeat Simple_repeat 1 94 0 251 146 12 37 chr11 62791070 62791152 -85992320 + (TG)n Simple_repeat Simple_repeat 1 80 0 2121 112 0 23 chr11 62791813 62792117 -85991355 + AluSx SINE Alu 1 297 -15 315 340 21 7 chr11 62792310 62792454 -85991018 + MIR SINE MIR 105 250 -12 194 243 0 0 chr11 62793413 62793450 -85990022 - MIR SINE MIR -185 77 41 406 267 1 0 chr11 62793945 62794049 -85989423 - MIR SINE MIR -63 145 55 1612 243 82 65 chr11 62794152 62794298 -85989174 - MER21B LTR ERV1 -205 658 516 951 102 129 0 chr11 62794298 62794445 -85989027 - FRAM SINE Alu 0 166 1 1612 243 82 65 chr11 62794445 62794616 -85988856 - MER21B LTR ERV1 -347 516 349 2173 112 0 13 chr11 62794616 62794919 -85988553 - AluSx SINE Alu -13 299 1 1612 243 82 65 chr11 62794919 62795247 -85988225 - MER21B LTR ERV1 -514 349 1 268 278 112 27 chr11 62795251 62795438 -85988034 - L1MC/D LINE L1 -1921 5887 5685 205 346 62 0 chr11 62795774 62795855 -85987617 - L2 LINE L2 0 3313 3228 1430 234 91 31 chr11 62796042 62796560 -85986912 - MLT1H1 LTR MaLR 0 555 7 660 203 96 10 chr11 62796707 62796904 -85986568 - MER20 DNA MER1_type -5 214 1 2221 119 0 0 chr11 62796908 62797220 -85986252 + AluSx SINE Alu 1 312 0 1111 292 83 3 chr11 62797588 62797961 -85985511 - L2 LINE L2 -793 2521 2119 471 234 124 7 chr11 62798629 62798774 -85984698 + MER69A DNA AcHobo 1 162 -15 260 312 11 43 chr11 62798793 62798886 -85984586 - MIR SINE MIR -65 197 108 1797 127 10 45 chr11 62798919 62799211 -85984261 + AluSx SINE Alu 1 282 -30 2197 95 0 3 chr11 62799240 62799534 -85983938 + AluSg1 SINE Alu 1 293 -16 1686 136 0 0 chr11 62799779 62800021 -85983451 - AluSx SINE Alu -13 299 58 576 190 29 15 chr11 62800041 62800178 -85983294 - MIR SINE MIR -45 217 79 244 320 40 60 chr11 62800182 62800282 -85983190 + L2 LINE L2 3170 3267 -46 737 227 303 6 chr11 62800514 62800904 -85982568 + L2 LINE L2 2522 3023 -290 446 69 0 0 chr11 62800933 62800991 -85982481 + AluJ/FLAM SINE Alu 2 59 -253 932 130 0 0 chr11 62801100 62801231 -85982241 - FLAM_C SINE Alu -12 131 1 772 185 0 22 chr11 62801682 62801817 -85981655 - AluJb SINE Alu -180 132 1 193 372 44 9 chr11 62801995 62802108 -85981364 - L2 LINE L2 -18 3254 3138 * 328 284 20 10 chr11 62802104 62802206 -85981266 - MIR SINE MIR -71 137 35 1966 148 0 0 chr11 62802922 62803212 -85980260 - AluJb SINE Alu -22 290 1 748 308 26 22 chr11 62803233 62803460 -85980012 + MIR SINE MIR 35 262 0 2483 60 0 0 chr11 62804089 62804391 -85979081 - AluY SINE Alu -9 302 1 2309 85 3 0 chr11 62804999 62805294 -85978178 + AluSx SINE Alu 1 296 -16 404 224 28 37 chr11 62805894 62806001 -85977471 + MIR SINE MIR 48 153 -109 661 179 137 30 chr11 62806787 62806955 -85976517 + AluJb SINE Alu 120 305 -7 215 315 0 65 chr11 62807416 62807524 -85975948 + L2 LINE L2 2925 3025 -247 1927 118 41 0 chr11 62807809 62808101 -85975371 + AluSx SINE Alu 1 303 0 672 254 0 0 chr11 62808110 62808240 -85975232 - FLAM_A SINE Alu -1 132 3 2081 119 0 32 chr11 62808242 62808553 -85974919 - AluSx SINE Alu -11 301 1 1668 232 50 17 chr11 62808635 62809117 -85974355 + MLT1D LTR MaLR 8 505 0 1440 176 3 40 chr11 62809925 62810221 -85973251 - AluJo SINE Alu -13 299 15 21 82 0 0 chr11 62810280 62810329 -85973143 + AT_rich Low_complexity Low_complexity 1 49 0 1172 126 6 0 chr11 62810352 62810526 -85972946 - AluSg/x SINE Alu -10 300 126 4074 43 35 0 chr11 62810626 62811140 -85972332 - SVA Other Other -834 552 21 885 165 0 0 chr11 62811149 62811282 -85972190 - FLAM_C SINE Alu 0 133 1 458 242 186 48 chr11 62811380 62811628 -85971844 - MLT1F LTR MaLR -6 536 255 2143 118 3 0 chr11 62812204 62812501 -85970971 - AluSx SINE Alu -14 298 1 1299 155 140 11 chr11 62812826 62812955 -85970517 + AluJo SINE Alu 1 112 -200 2186 100 7 0 chr11 62812955 62813255 -85970217 + AluSp SINE Alu 1 302 -11 1299 155 140 11 chr11 62813255 62813389 -85970083 + AluJo SINE Alu 112 298 -14 660 120 9 0 chr11 62813400 62813508 -85969964 + MLT1B LTR MaLR 1 109 -281 2090 109 0 3 chr11 62813508 62813791 -85969681 + AluSx SINE Alu 1 282 -30 2230 96 3 0 chr11 62813898 62814191 -85969281 - AluSg SINE Alu -16 294 1 1032 85 0 0 chr11 62814207 62814337 -85969135 - AluSg SINE Alu -180 130 1 1626 152 40 24 chr11 62814589 62814886 -85968586 + AluJo SINE Alu 1 302 -10 1514 170 13 22 chr11 62814903 62815214 -85968258 - AluSx SINE Alu -4 308 1 401 20 0 0 chr11 62815221 62815272 -85968200 - AluY SINE Alu -13 296 246 2209 43 11 14 chr11 62815273 62815555 -85967917 - AluY SINE Alu -30 281 1 1792 115 43 0 chr11 62816645 62816923 -85966549 + AluSx SINE Alu 6 295 -17 221 333 62 21 chr11 62817938 62818034 -85965438 - MIR SINE MIR -76 186 87 204 97 0 0 chr11 62818088 62818119 -85965353 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 395 283 37 6 chr11 62819504 62819682 -85963790 + L1ME LINE L1 5265 5468 -702 381 342 42 17 chr11 62820249 62820489 -85962983 + L2 LINE L2 2811 3056 -216 258 294 113 12 chr11 62821401 62821569 -85961903 + MIR SINE MIR 35 217 -45 337 248 69 10 chr11 62822562 62822663 -85960809 + L2 LINE L2 3193 3299 -14 1948 109 35 0 chr11 62822745 62823030 -85960442 + AluSx SINE Alu 1 295 -17 255 354 62 0 chr11 62824407 62824537 -85958935 - L3 LINE CR1 -107 1470 1333 327 301 135 18 chr11 62824986 62825149 -85958323 - MIR SINE MIR -32 230 49 186 43 0 0 chr11 62826042 62826065 -85957407 + (GCTG)n Simple_repeat Simple_repeat 1 23 0 207 300 17 0 chr11 62828957 62829017 -85954455 - L2 LINE L2 -23 3249 3189 2299 90 3 0 chr11 62829408 62829708 -85953764 + AluSp SINE Alu 1 301 -12 273 260 167 0 chr11 62830431 62830527 -85952945 - L3 LINE CR1 -40 1537 1426 192 125 0 0 chr11 62832378 62832410 -85951062 + (TTTCC)n Simple_repeat Simple_repeat 3 34 0 2138 96 14 0 chr11 62833688 62833979 -85949493 - AluSq SINE Alu -18 295 1 232 301 14 0 chr11 62838033 62838106 -85945366 + (TGG)n Simple_repeat Simple_repeat 1 74 0 216 338 181 0 chr11 62839383 62839587 -85943885 + L2 LINE L2 2869 3109 -163 942 144 3 13 chr11 62839607 62840056 -85943416 + (TCCA)n Simple_repeat Simple_repeat 1 626 0 989 123 6 0 chr11 62840072 62840251 -85943221 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 1065 134 3 3 chr11 62840291 62840645 -85942827 + (TCCA)n Simple_repeat Simple_repeat 1 354 0 424 206 176 37 chr11 62841262 62841398 -85942074 - L2 LINE L2 -1 3312 3158 2020 114 11 7 chr11 62841741 62842054 -85941418 - AluSx SINE Alu 0 314 1 2141 78 3 3 chr11 62842926 62843208 -85940264 + AluSp SINE Alu 19 300 -13 433 256 17 100 chr11 62844910 62845046 -85938426 - MIR SINE MIR -52 210 91 1939 141 10 3 chr11 62845046 62845350 -85938122 + AluJb SINE Alu 1 306 -6 433 256 17 100 chr11 62845350 62845393 -85938079 - MIR SINE MIR -171 91 46 231 286 14 0 chr11 62846424 62846494 -85936978 + MIR3 SINE MIR 85 155 -53 293 310 85 23 chr11 62846850 62846979 -85936493 + MIR SINE MIR 8 144 -118 697 245 215 26 chr11 62847026 62847112 -85936360 - L2 LINE L2 -64 3249 3181 2042 115 6 16 chr11 62847112 62847424 -85936048 + AluSc SINE Alu 1 309 0 697 245 215 26 chr11 62847424 62847676 -85935796 - L2 LINE L2 -132 3181 2847 442 273 133 6 chr11 62847969 62848134 -85935338 + MIR SINE MIR 39 224 -38 329 224 0 0 chr11 62848174 62848241 -85935231 + L2 LINE L2 3245 3311 -2 870 125 5 0 chr11 62848241 62848441 -85935031 + (TGGA)n Simple_repeat Simple_repeat 1 201 0 181 221 195 39 chr11 62848562 62848639 -85934833 - MIR3 SINE MIR -31 177 89 298 213 25 38 chr11 62849656 62849736 -85933736 + MIR3 SINE MIR 81 159 -49 2149 97 3 13 chr11 62851393 62851693 -85931779 - AluSc SINE Alu -12 297 1 186 288 17 17 chr11 62853160 62853219 -85930253 + L2 LINE L2 2750 2808 -506 269 214 0 18 chr11 62853444 62853500 -85929972 + L2 LINE L2 3240 3294 -19 581 190 0 5 chr11 62854555 62854775 -85928697 + (TCCA)n Simple_repeat Simple_repeat 1 218 0 308 335 98 63 chr11 62854776 62855030 -85928442 - L1MEd LINE L1 -4902 1217 955 458 279 101 61 chr11 62855051 62855298 -85928174 - L2 LINE L2 0 3272 3016 356 352 103 12 chr11 62856077 62856398 -85927074 - L2 LINE L2 -340 2974 2625 2040 108 0 14 chr11 62857768 62858064 -85925408 + AluSx SINE Alu 5 296 -16 2075 100 7 23 chr11 62860022 62860331 -85923141 - AluSg1 SINE Alu -5 304 1 1025 103 0 0 chr11 62860331 62860467 -85923005 - AluSq/x SINE Alu -176 136 1 307 297 246 38 chr11 62860609 62861027 -85922445 + L3 LINE CR1 986 1490 -87 202 287 157 35 chr11 62861042 62861157 -85922315 + L2 LINE L2 3059 3187 -85 305 276 99 29 chr11 62861322 62861472 -85922000 - MIR SINE MIR -66 142 5 438 192 10 10 chr11 62861517 62861616 -85921856 - MER103 DNA DNA -46 120 22 213 268 71 80 chr11 62861701 62861925 -85921547 - L2 LINE L2 0 3272 3051 215 308 86 17 chr11 62862781 62862898 -85920574 + MIR SINE MIR 68 192 -70 200 200 22 0 chr11 62863311 62863356 -85920116 + C-rich Low_complexity Low_complexity 3 48 0 221 222 9 37 chr11 62863367 62863475 -85919997 + CT-rich Low_complexity Low_complexity 3 107 0 455 158 97 53 chr11 62864570 62864684 -85918788 - MIR3 SINE MIR -41 167 49 273 269 97 0 chr11 62865082 62865175 -85918297 - MIR SINE MIR -74 188 87 501 306 44 33 chr11 62865731 62865911 -85917561 - MIR SINE MIR -12 250 69 279 275 45 73 chr11 62867867 62868045 -85915427 - L2 LINE L2 -245 3027 2855 244 271 23 70 chr11 62868136 62868265 -85915207 + L1ME3 LINE L1 6038 6160 -2 227 196 36 18 chr11 62868471 62868527 -85914945 - MIR SINE MIR -103 159 103 434 222 111 8 chr11 62869167 62869293 -85914179 + MIR SINE MIR 31 169 -93 290 236 120 0 chr11 62869685 62869819 -85913653 - MIR3 SINE MIR -60 148 6 412 277 50 80 chr11 62870778 62870830 -85912642 + MIR SINE MIR 15 67 -195 1801 146 3 44 chr11 62870830 62871145 -85912327 - AluSx SINE Alu -10 302 1 412 277 50 80 chr11 62871145 62871330 -85912142 + MIR SINE MIR 67 245 -17 2209 116 0 0 chr11 62872974 62873275 -85910197 + AluSx SINE Alu 1 301 -11 274 311 123 8 chr11 62873676 62873798 -85909674 - MIR SINE MIR -5 257 122 806 148 7 28 chr11 62873798 62873940 -85909532 + L1MB7 LINE L1 6027 6165 -19 2261 95 0 0 chr11 62873983 62874279 -85909193 + AluSx SINE Alu 1 296 -16 283 268 70 0 chr11 62874283 62874354 -85909118 - MIR SINE MIR -87 121 46 540 211 24 8 chr11 62877329 62877452 -85906020 + MIR SINE MIR 70 194 -68 396 103 0 0 chr11 62877529 62877587 -85905885 + (TCCA)n Simple_repeat Simple_repeat 1 58 0 216 283 0 0 chr11 62877593 62877639 -85905833 - L2 LINE L2 -24 3289 3244 2114 108 3 7 chr11 62878048 62878343 -85905129 + AluSq SINE Alu 1 294 -19 513 244 113 42 chr11 62878496 62878664 -85904808 + MIR SINE MIR 47 226 -36 323 256 91 25 chr11 62879468 62879589 -85903883 + MIR SINE MIR 64 192 -70 245 325 63 24 chr11 62879778 62879904 -85903568 + MIR3 SINE MIR 71 201 -7 211 196 39 0 chr11 62881287 62881338 -85902134 - MIR SINE MIR -46 216 164 181 341 110 0 chr11 62881390 62881472 -85902000 - MIR SINE MIR -110 152 62 26 0 0 0 chr11 62881576 62881602 -85901870 + AT_rich Low_complexity Low_complexity 1 26 0 194 290 63 0 chr11 62882327 62882405 -85901067 - MIR SINE MIR -63 145 100 227 191 21 0 chr11 62882624 62882671 -85900801 - L2 LINE L2 0 3313 3266 510 283 40 40 chr11 62883808 62883985 -85899487 + MIR SINE MIR 50 226 -36 444 249 173 5 chr11 62887097 62887282 -85896190 + MIR SINE MIR 22 237 -25 1614 130 0 80 chr11 62887359 62887683 -85895789 - AluJo SINE Alu -4 308 11 261 0 0 0 chr11 62887809 62887838 -85895634 + (A)n Simple_repeat Simple_repeat 1 29 0 492 321 16 27 chr11 62889608 62889792 -85893680 + MIR SINE MIR 9 190 -72 419 284 83 18 chr11 62890254 62890423 -85893049 - MIR SINE MIR -15 247 68 1833 101 0 25 chr11 62890423 62890709 -85892763 - AluSq SINE Alu -13 300 22 222 264 55 22 chr11 62891216 62891307 -85892165 - MIR SINE MIR -73 135 42 2045 97 0 4 chr11 62891614 62891892 -85891580 - AluSq SINE Alu -36 277 1 232 190 0 127 chr11 62892120 62892199 -85891273 + MIR3 SINE MIR 95 163 -45 560 174 9 43 chr11 62893325 62893440 -85890032 - FLAM_A SINE Alu -19 123 13 269 274 12 0 chr11 62893518 62893602 -85889870 - MER117 DNA MER1_type -16 181 97 318 333 29 1 chr11 62893649 62893766 -85889706 - MIR SINE MIR -67 141 22 2169 117 0 10 chr11 62894375 62894682 -85888790 - AluSx SINE Alu -8 304 1 2129 106 13 0 chr11 62894686 62894987 -85888485 - AluSx SINE Alu -7 305 1 2154 98 0 0 chr11 62895001 62895278 -85888194 - AluSg SINE Alu -33 277 1 706 141 0 0 chr11 62895278 62895399 -85888073 + MER41B LTR ERV1 515 635 0 * 1006 144 144 0 chr11 62895399 62895623 -85887849 - LTR56 LTR ERV1 -162 283 27 1739 122 98 0 chr11 62895623 62895878 -85887594 + AluSg SINE Alu 1 280 -30 520 27 13 13 chr11 62895878 62895953 -85887519 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 1970 144 0 7 chr11 62896001 62896299 -85887173 + AluSq SINE Alu 1 296 -17 740 164 52 0 chr11 62896321 62896455 -85887017 - MER34C LTR ERV1 -444 141 1 858 268 131 23 chr11 62896750 62897132 -85886340 + L1ME3A LINE L1 5747 6170 0 2015 127 3 3 chr11 62897146 62897438 -85886034 + AluJo SINE Alu 1 292 -20 2053 124 3 0 chr11 62897443 62897734 -85885738 + AluSg SINE Alu 1 292 -18 2101 136 0 0 chr11 62897746 62898098 -85885374 + AluSx SINE Alu 1 312 0 403 290 104 56 chr11 62898098 62898291 -85885181 + L1ME4a LINE L1 5884 6094 -27 1667 141 4 0 chr11 62898291 62898540 -85884932 - AluSx SINE Alu -17 295 46 403 290 104 56 chr11 62898540 62898567 -85884905 + L1ME4a LINE L1 6094 6118 -3 821 164 8 0 chr11 62898627 62898761 -85884711 - AluSq/x SINE Alu -178 135 1 274 318 11 0 chr11 62900083 62900171 -85883301 + MIR SINE MIR 63 151 -57 1976 139 23 0 chr11 62901509 62901811 -85881661 + AluJb SINE Alu 1 309 -3 256 172 47 16 chr11 62902207 62902271 -85881201 + MIR SINE MIR 48 113 -149 1380 141 133 31 chr11 62902273 62902399 -85881073 - AluSx SINE Alu -19 293 181 1702 103 129 4 chr11 62902399 62902662 -85880810 - AluSc SINE Alu -3 296 1 2197 85 7 0 chr11 62902665 62902948 -85880524 - AluSc SINE Alu -24 285 1 1380 141 133 31 chr11 62902948 62903073 -85880399 - AluSx SINE Alu -132 180 12 1803 143 3 30 chr11 62903084 62903385 -85880087 - AluJo SINE Alu -13 299 7 198 0 0 0 chr11 62905008 62905030 -85878442 + (TA)n Simple_repeat Simple_repeat 2 23 0 2206 103 10 3 chr11 62905229 62905529 -85877943 - AluSx SINE Alu -10 302 1 1599 93 0 9 chr11 62908182 62908396 -85875076 + AluSc SINE Alu 85 296 -13 1402 133 76 126 chr11 62908402 62908552 -85874920 + AluJb SINE Alu 1 128 -184 2241 86 23 26 chr11 62908552 62908856 -85874616 + AluSg SINE Alu 1 303 -7 1402 133 76 126 chr11 62908856 62909022 -85874450 + AluJb SINE Alu 128 301 -11 2033 128 14 3 chr11 62909032 62909321 -85874151 + AluSg SINE Alu 6 297 -13 2153 86 43 23 chr11 62909330 62909631 -85873841 + AluSx SINE Alu 2 308 -4 384 71 0 0 chr11 62909769 62909825 -85873647 + (CA)n Simple_repeat Simple_repeat 2 57 0 2424 70 0 19 chr11 62910737 62911049 -85872423 + AluSg SINE Alu 1 306 -4 2458 50 0 0 chr11 62911140 62911455 -85872017 + AluSc SINE Alu 1 315 0 309 100 0 20 chr11 62912303 62912353 -85871119 + Alu SINE Alu 1 49 -251 1304 179 0 0 chr11 62912378 62912590 -85870882 + AluSx SINE Alu 1 212 -100 402 103 0 0 chr11 62912590 62912648 -85870824 + AluSg/x SINE Alu 76 133 -177 2368 97 3 0 chr11 62912648 62912956 -85870516 + AluSq SINE Alu 1 309 -4 1713 110 0 0 chr11 62912955 62913182 -85870290 + AluSg/x SINE Alu 76 302 -10 * 215 218 18 18 chr11 62913320 62913375 -85870097 + CT-rich Low_complexity Low_complexity 4 58 0 1467 182 3 51 chr11 62913566 62913737 -85869735 - AluJo SINE Alu -14 298 147 2356 109 0 0 chr11 62913737 62914041 -85869431 - AluSx SINE Alu -8 304 1 1467 182 3 51 chr11 62914041 62914182 -85869290 - AluJo SINE Alu -165 147 1 2074 113 32 0 chr11 62914200 62914482 -85868990 - AluSx SINE Alu -20 292 2 319 313 125 0 chr11 62914585 62914761 -85868711 - L2 LINE L2 -5 3308 3111 200 229 115 0 chr11 62914880 62914941 -85868531 + L2 LINE L2 3140 3207 -65 453 291 39 78 chr11 62915052 62915111 -85868361 - MIR SINE MIR -63 199 139 1925 152 17 3 chr11 62915111 62915401 -85868071 - AluJb SINE Alu -18 294 1 453 291 39 78 chr11 62915401 62915547 -85867925 - MIR SINE MIR -123 139 2 627 239 132 6 chr11 62915867 62916034 -85867438 - MLT1D LTR MaLR -46 459 272 901 37 0 0 chr11 62916034 62916141 -85867331 - U6 snRNA snRNA 0 107 1 2267 92 0 3 chr11 62916141 62916433 -85867039 - AluSx SINE Alu -21 291 1 354 268 133 61 chr11 62916692 62916807 -85866665 - MER34C LTR ERV1 0 585 480 3204 75 18 5 chr11 62916807 62917245 -85866227 + MLT2A1 LTR ERVL 1 444 0 354 268 133 61 chr11 62917245 62917437 -85866035 - MER34C LTR ERV1 -105 480 240 2186 111 20 3 chr11 62917437 62917735 -85865737 + AluSc SINE Alu 1 303 -6 354 268 133 61 chr11 62917735 62917827 -85865645 - MER34C LTR ERV1 -345 240 156 869 153 0 0 chr11 62917827 62917964 -85865508 - LTR23 LTR ERV1 -3 434 298 1214 105 0 0 chr11 62917965 62918127 -85865345 - AluSg/x SINE Alu -17 293 132 2338 68 23 16 chr11 62918127 62918435 -85865037 - AluY SINE Alu -1 310 1 1161 184 77 8 chr11 62918472 62918706 -85864766 + AluJb SINE Alu 49 298 -14 538 152 11 0 chr11 62918748 62918840 -85864632 + MER41B LTR ERV1 1 93 -542 284 125 54 0 chr11 62918941 62918997 -85864475 + Alu SINE Alu 238 296 -6 1946 112 8 11 chr11 62919668 62919936 -85863536 + AluSx SINE Alu 1 267 -45 228 249 76 64 chr11 62919994 62920243 -85863229 + L2 LINE L2 1796 2047 -1267 2435 160 123 12 chr11 62920389 62920699 -85862773 + Charlie1 DNA MER1_type 1777 2051 -710 1772 180 10 20 chr11 62920699 62921005 -85862467 + AluJo SINE Alu 1 303 -9 2435 160 123 12 chr11 62921005 62921524 -85861948 + Charlie1 DNA MER1_type 2051 2759 -2 350 299 87 71 chr11 62921767 62921891 -85861581 - L1 LINE L1 -2871 3275 3146 1950 147 3 3 chr11 62921891 62922177 -85861295 - AluSx SINE Alu -18 294 9 350 299 87 71 chr11 62922177 62922236 -85861236 - L1 LINE L1 -3000 3146 3089 446 226 4 109 chr11 62922237 62922467 -85861005 - AluYa5 SINE Alu 0 311 106 2171 122 0 20 chr11 62922570 62922734 -85860738 - AluSx SINE Alu -15 297 131 1542 72 10 0 chr11 62922734 62922929 -85860543 - AluSq SINE Alu -16 297 101 2142 125 7 0 chr11 62922930 62923226 -85860246 - AluSg SINE Alu -12 298 1 2171 122 0 20 chr11 62923226 62923362 -85860110 - AluSx SINE Alu -180 132 1 495 244 10 119 chr11 62923430 62923623 -85859849 - MIR SINE MIR -70 192 21 578 86 0 0 chr11 62924087 62924168 -85859304 + AluY SINE Alu 2 82 -236 941 131 8 0 chr11 62924618 62924748 -85858724 - AluSq/x SINE Alu -182 131 1 312 235 37 25 chr11 62924776 62924857 -85858615 - MIR SINE MIR -116 146 65 834 156 7 22 chr11 62926422 62926557 -85856915 + FRAM SINE Alu 21 153 -23 2220 96 9 53 chr11 62926566 62926712 -85856760 + AluSc SINE Alu 1 152 -157 2524 58 0 35 chr11 62926712 62927023 -85856449 + AluY SINE Alu 1 300 -11 2220 96 9 53 chr11 62927023 62927198 -85856274 + AluSc SINE Alu 152 308 -1 1781 119 4 16 chr11 62928024 62928268 -85855204 - AluSq SINE Alu -72 241 1 1218 236 128 32 chr11 62928268 62928662 -85854810 + L2 LINE L2 2194 2640 -674 2377 106 0 10 chr11 62928662 62928973 -85854499 - AluSx SINE Alu -4 308 1 1218 236 128 32 chr11 62928973 62929039 -85854433 + L2 LINE L2 2640 2698 -616 587 251 51 116 chr11 62929046 62929173 -85854299 + L2 LINE L2 2952 3086 -227 2284 112 3 0 chr11 62929173 62929469 -85854003 - AluSp SINE Alu -16 297 1 392 0 21 0 chr11 62929471 62929519 -85853953 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 2329 62 4 4 chr11 62929521 62929797 -85853675 - AluY SINE Alu -30 281 6 1829 159 6 35 chr11 62929801 62930115 -85853357 - AluJb SINE Alu -7 305 1 587 251 51 116 chr11 62930115 62930182 -85853290 + L2 LINE L2 3091 3161 -152 2502 34 20 7 chr11 62930182 62930474 -85852998 - AluY SINE Alu -15 296 1 587 251 51 116 chr11 62930474 62930637 -85852835 + L2 LINE L2 3161 3297 -16 217 275 187 78 chr11 62930954 62931071 -85852401 - L2 LINE L2 -490 2824 2721 2462 71 0 7 chr11 62931071 62931368 -85852104 + AluSq SINE Alu 1 295 -18 497 286 0 0 chr11 62931375 62931508 -85851964 + FLAM_C SINE Alu 1 133 0 217 275 187 78 chr11 62931508 62931735 -85851737 - L2 LINE L2 -598 2716 2515 1917 136 4 7 chr11 62931735 62932014 -85851458 + AluSx SINE Alu 21 298 -14 2362 99 3 0 chr11 62932016 62932318 -85851154 + AluSp SINE Alu 1 303 -10 217 275 187 78 chr11 62932318 62932484 -85850988 - L2 LINE L2 -799 2515 2245 344 287 139 17 chr11 62932640 62932870 -85850602 - L2 LINE L2 -1340 1974 1717 2401 88 0 3 chr11 62933208 62933505 -85849967 - AluSq SINE Alu -17 296 1 303 209 9 87 chr11 62933508 62933623 -85849849 + MLT1L LTR MaLR 510 615 0 1765 112 81 4 chr11 62933786 62934072 -85849400 - AluSg1 SINE Alu 0 306 1 1908 122 12 64 chr11 62934107 62934435 -85849037 - AluSx SINE Alu -1 311 1 220 350 167 16 chr11 62934441 62934554 -85848918 + L2 LINE L2 2986 3081 -191 1974 165 7 0 chr11 62934554 62934863 -85848609 - AluJo SINE Alu -1 311 1 220 350 167 16 chr11 62934863 62934995 -85848477 + L2 LINE L2 3081 3268 -4 370 311 184 10 chr11 62935370 62935576 -85847896 - MIR SINE MIR -3 259 18 590 274 183 39 chr11 62935596 62936005 -85847467 - MLT1L LTR MaLR -4 611 144 378 82 98 0 chr11 62936074 62936135 -85847337 - MSTB2 LTR MaLR 0 457 391 2434 83 3 0 chr11 62936136 62936436 -85847036 + AluSg SINE Alu 2 302 -8 2238 121 0 10 chr11 62936440 62936738 -85846734 + AluSx SINE Alu 1 295 -17 1613 177 101 65 chr11 62936879 62937325 -85846147 - MLT1C LTR MaLR 0 467 6 237 250 0 0 chr11 62937464 62937516 -85845956 - L2 LINE L2 -4 3268 3217 2508 45 0 72 chr11 62937720 62938055 -85845417 - AluY SINE Alu 0 311 1 1758 116 30 82 chr11 62938095 62938424 -85845048 - AluSx SINE Alu 0 312 1 764 178 42 30 chr11 62938494 62938730 -85844742 + Charlie1 DNA MER1_type 2519 2757 -4 964 202 6 6 chr11 62938780 62938953 -85844519 - AluJb SINE Alu -5 307 135 1926 155 37 0 chr11 62938964 62939260 -85844212 - AluSx SINE Alu -5 307 1 370 184 143 61 chr11 62939268 62939311 -85844161 + Charlie1 DNA MER1_type 2598 2636 -125 2156 105 21 3 chr11 62939311 62939597 -85843875 - AluSg SINE Alu -19 291 1 370 184 143 61 chr11 62939597 62939700 -85843772 + Charlie1 DNA MER1_type 2636 2756 -5 2089 135 7 7 chr11 62940256 62940560 -85842912 - AluSg SINE Alu -4 306 3 2064 155 0 0 chr11 62940571 62940875 -85842597 - AluSg SINE Alu -6 304 1 2419 82 13 3 chr11 62941218 62941524 -85841948 + AluSc SINE Alu 1 309 0 2256 120 0 3 chr11 62941524 62941831 -85841641 + AluSg SINE Alu 1 307 -3 2234 100 0 7 chr11 62942100 62942399 -85841073 + AluSg1 SINE Alu 1 297 -12 6838 175 63 33 chr11 62942567 62942995 -85840477 - Charlie1 DNA MER1_type -1146 1615 1201 2414 72 24 0 chr11 62942995 62943286 -85840186 - AluSq SINE Alu -15 298 1 6838 175 63 33 chr11 62943286 62944421 -85839051 - Charlie1 DNA MER1_type -1560 1201 5 428 151 0 47 chr11 62944977 62945063 -85838409 - FLAM_A SINE Alu -20 122 41 546 197 26 0 chr11 62945462 62945579 -85837893 + FLAM_C SINE Alu 24 143 0 2101 90 7 67 chr11 62945936 62946266 -85837206 + AluSq SINE Alu 1 312 0 663 211 121 21 chr11 62946447 62946637 -85836835 - MIR SINE MIR -32 230 22 1674 150 0 4 chr11 62946637 62946883 -85836589 - AluSx SINE Alu -17 295 51 2177 117 3 0 chr11 62947822 62948112 -85835360 + AluSx SINE Alu 1 291 -21 2459 89 3 13 chr11 62948114 62948418 -85835054 + AluSp SINE Alu 1 303 -10 207 0 0 0 chr11 62948418 62948441 -85835031 + (TA)n Simple_repeat Simple_repeat 1 23 0 2459 89 3 13 chr11 62948441 62948452 -85835020 + AluSp SINE Alu 303 313 0 180 77 0 0 chr11 62949329 62949355 -85834117 + (CGAGG)n Simple_repeat Simple_repeat 4 29 0 28 0 0 0 chr11 62950342 62950370 -85833102 + AT_rich Low_complexity Low_complexity 1 28 0 228 130 0 0 chr11 62950930 62950976 -85832496 + (TAAAA)n Simple_repeat Simple_repeat 5 50 0 23 0 0 0 chr11 62952331 62952354 -85831118 + GC_rich Low_complexity Low_complexity 1 23 0 1840 165 0 33 chr11 62953082 62953385 -85830087 + AluJb SINE Alu 1 293 -19 2298 107 13 0 chr11 62953667 62953966 -85829506 + AluSp SINE Alu 1 303 -10 2295 96 0 7 chr11 62955376 62955669 -85827803 + AluSq SINE Alu 11 301 -12 2219 90 28 3 chr11 62956250 62956540 -85826932 + AluSg SINE Alu 1 297 -13 2335 112 3 0 chr11 62956593 62956898 -85826574 + AluSx SINE Alu 1 306 -6 2652 47 0 0 chr11 62956968 62957268 -85826204 + AluY SINE Alu 1 300 -11 229 337 61 0 chr11 62957285 62957383 -85826089 - MIR SINE MIR -109 153 50 540 204 139 0 chr11 62957562 62957699 -85825773 + L1PA16 LINE L1 6011 6166 0 325 207 148 67 chr11 62957704 62957798 -85825674 - MIR SINE MIR -10 252 142 1729 165 16 38 chr11 62957798 62958114 -85825358 - AluJo SINE Alu -3 309 1 325 207 148 67 chr11 62958114 62958154 -85825318 - MIR SINE MIR -120 142 107 1819 178 0 13 chr11 62959104 62959402 -85824070 - AluJb SINE Alu -18 294 1 1759 83 8 8 chr11 62959730 62959970 -85823502 + AluSx SINE Alu 56 295 -17 24 0 0 0 chr11 62959971 62959995 -85823477 + AT_rich Low_complexity Low_complexity 1 24 0 183 238 50 50 chr11 62960163 62960243 -85823229 + L2 LINE L2 385 464 -2850 2105 100 31 0 chr11 62961094 62961385 -85822087 + AluSc SINE Alu 1 300 -9 251 54 27 0 chr11 62966378 62966415 -85817057 + (CGG)n Simple_repeat Simple_repeat 1 38 0 26 30 0 0 chr11 62966674 62966707 -85816765 + GC_rich Low_complexity Low_complexity 1 33 0 25 51 0 0 chr11 62966896 62966935 -85816537 + GC_rich Low_complexity Low_complexity 1 39 0 294 257 206 7 chr11 62969481 62969617 -85813855 + L2 LINE L2 3151 3313 0 544 263 63 11 chr11 62970924 62971099 -85812373 + MIR SINE MIR 35 218 -44 1977 171 76 5 chr11 62971296 62971664 -85811808 + MSTD LTR MaLR 3 396 0 1280 161 0 0 chr11 62971771 62971970 -85811502 - AluSg/x SINE Alu -21 291 93 2279 97 6 3 chr11 62972078 62972389 -85811083 - AluSx SINE Alu 0 312 1 294 293 171 0 chr11 62972409 62972590 -85810882 + L2 LINE L2 2985 3196 -76 2669 23 0 0 chr11 62972590 62972895 -85810577 - AluY SINE Alu -6 305 1 2282 78 0 3 chr11 62972948 62973243 -85810229 - AluY SINE Alu -17 294 1 844 138 69 75 chr11 62973270 62973444 -85810028 + AluJo SINE Alu 1 173 -139 1864 77 20 0 chr11 62973445 62973692 -85809780 - AluSp SINE Alu -61 252 1 298 300 52 88 chr11 62973903 62974303 -85809169 + L2 LINE L2 2858 3243 -29 333 0 0 0 chr11 62974323 62974360 -85809112 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 552 311 73 5 chr11 62975862 62976068 -85807404 - MIR SINE MIR -32 230 11 279 217 33 0 chr11 62976576 62976636 -85806836 + L2 LINE L2 3234 3295 -18 318 253 0 58 chr11 62976895 62976982 -85806490 - L2 LINE L2 -2 3311 3230 479 81 0 14 chr11 62977258 62977332 -85806140 + FLAM_A SINE Alu 68 140 -2 1726 147 30 27 chr11 62977939 62978238 -85805234 + AluJb SINE Alu 1 300 -12 2178 117 0 0 chr11 62979513 62979821 -85803651 - AluSx SINE Alu -2 310 3 1008 96 0 22 chr11 62980632 62980768 -85802704 - FLAM_C SINE Alu 0 133 1 312 327 87 0 chr11 62980791 62980941 -85802531 - MIR SINE MIR -99 163 1 447 227 0 136 chr11 62981893 62982047 -85801425 + MIR SINE MIR 21 153 -109 314 225 126 24 chr11 62982111 62982282 -85801190 - MIR SINE MIR -52 210 20 194 344 151 0 chr11 62982279 62982372 -85801100 + L2 LINE L2 3203 3309 -4 * 2152 131 0 3 chr11 62982590 62982903 -85800569 + AluSq SINE Alu 1 312 -1 562 311 38 14 chr11 62983852 62984064 -85799408 - MIR SINE MIR -28 234 18 2273 88 7 0 chr11 62984101 62984406 -85799066 + AluSq SINE Alu 7 313 0 270 339 73 9 chr11 62984841 62984950 -85798522 + MIR SINE MIR 16 131 -77 213 263 18 0 chr11 62985388 62985445 -85798027 + (CGG)n Simple_repeat Simple_repeat 1 58 0 194 250 39 0 chr11 62986284 62986336 -85797136 + MER5B DNA MER1_type 91 144 -34 1261 114 20 10 chr11 62986436 62986637 -85796835 - AluJo SINE Alu -13 299 97 219 36 0 0 chr11 62986747 62986775 -85796697 + (CAGG)n Simple_repeat Simple_repeat 2 29 0 882 137 15 0 chr11 62987323 62987454 -85796018 - FLAM_A SINE Alu 0 133 1 285 247 38 101 chr11 62987699 62987857 -85795615 + L2 LINE L2 3165 3312 -1 256 299 11 11 chr11 62989716 62989803 -85793669 + CT-rich Low_complexity Low_complexity 3 89 0 786 260 150 21 chr11 62991104 62991647 -85791825 - L2 LINE L2 -5 3308 2687 443 329 48 12 chr11 62991648 62991897 -85791575 + L1ME LINE L1 5559 5816 -346 1911 129 7 30 chr11 62991902 62992025 -85791447 + AluJb SINE Alu 1 125 -187 2147 113 3 3 chr11 62992025 62992326 -85791146 - AluSg SINE Alu -9 301 1 1911 129 7 30 chr11 62992326 62992505 -85790967 + AluJb SINE Alu 125 296 -16 1743 136 71 17 chr11 62992969 62993264 -85790208 + AluSx SINE Alu 1 311 -1 220 270 81 0 chr11 62993278 62993352 -85790120 - MIR SINE MIR -63 145 66 676 309 27 14 chr11 62993738 62993961 -85789511 + MIR SINE MIR 35 260 -2 341 268 71 91 chr11 62994779 62994977 -85788495 - MIR SINE MIR -54 208 15 * 396 175 0 72 chr11 62994963 62995060 -85788412 + MIR3 SINE MIR 85 174 -34 2074 106 51 0 chr11 62995067 62995360 -85788112 + AluSx SINE Alu 1 308 -4 210 200 15 31 chr11 62996233 62996298 -85787174 + C-rich Low_complexity Low_complexity 2 65 0 254 313 12 0 chr11 62997088 62997168 -85786304 - L2 LINE L2 -6 3266 3186 1885 132 17 3 chr11 62997208 62997497 -85785975 + AluSx SINE Alu 1 293 -19 273 309 82 0 chr11 62997900 62997997 -85785475 + MIR SINE MIR 109 213 -49 1085 174 50 4 chr11 62998004 62998246 -85785226 + ORSL DNA AcHobo 23 275 0 355 323 44 50 chr11 62998310 62998607 -85784865 + L2 LINE L2 2963 3257 -15 204 137 96 96 chr11 62999452 62999525 -85783947 + MIR3 SINE MIR 110 182 -26 350 322 164 0 chr11 63000751 63000928 -85782544 + MIR SINE MIR 29 234 -28 2114 92 0 3 chr11 63000956 63001266 -85782206 + AluSx SINE Alu 3 311 0 249 293 81 0 chr11 63003240 63003339 -85780133 + MIR SINE MIR 57 163 -99 606 319 80 42 chr11 63004087 63004488 -85778984 - L2 LINE L2 -18 3254 2839 935 246 87 30 chr11 63004585 63005083 -85778389 + L2 LINE L2 2712 3222 -91 180 132 0 53 chr11 63005074 63005112 -85778360 + MIR SINE MIR 223 258 -4 * 1650 154 29 7 chr11 63005116 63005388 -85778084 + AluJb SINE Alu 21 298 -14 1123 73 0 0 chr11 63005390 63005526 -85777946 + AluSq/x SINE Alu 1 136 -176 2100 129 0 0 chr11 63005527 63005821 -85777651 + AluSg SINE Alu 1 294 -16 350 305 6 0 chr11 63006865 63007029 -85776443 + (CCAA)n Simple_repeat Simple_repeat 4 168 0 302 282 0 0 chr11 63007162 63007279 -85776193 + (CCAA)n Simple_repeat Simple_repeat 4 120 0 419 289 0 7 chr11 63007306 63007725 -85775747 + (CCAA)n Simple_repeat Simple_repeat 1 416 0 430 284 0 0 chr11 63007741 63007917 -85775555 + (CCAA)n Simple_repeat Simple_repeat 1 176 0 258 337 10 0 chr11 63008409 63008507 -85774965 - L2 LINE L2 -224 3048 2950 375 257 7 44 chr11 63009618 63009754 -85773718 + CT-rich Low_complexity Low_complexity 3 133 0 239 253 39 84 chr11 63010392 63010546 -85772926 + L2 LINE L2 2899 3045 -227 321 289 47 23 chr11 63010997 63011125 -85772347 - MIR SINE MIR -21 241 111 183 293 78 9 chr11 63011472 63011588 -85771884 + L2 LINE L2 3146 3269 -3 196 118 29 0 chr11 63012214 63012248 -85771224 + MIR SINE MIR 113 147 -115 252 229 24 48 chr11 63012498 63012581 -85770891 + MIR SINE MIR 73 147 -61 2125 93 4 0 chr11 63012590 63012895 -85770577 + AluSg SINE Alu 1 306 0 257 263 62 0 chr11 63012896 63012976 -85770496 + MIR SINE MIR 50 134 -74 929 143 0 0 chr11 63013017 63013150 -85770322 - FLAM_C SINE Alu 0 133 1 265 216 14 54 chr11 63013176 63013250 -85770222 - MIR SINE MIR -84 124 54 298 184 145 0 chr11 63014204 63014280 -85769192 + MIR SINE MIR 72 158 -104 1928 111 0 4 chr11 63014412 63014674 -85768798 + AluSx SINE Alu 14 274 -38 753 251 30 39 chr11 63015875 63016078 -85767394 - MIR SINE MIR -34 228 28 190 200 67 0 chr11 63016446 63016491 -85766981 + MIR SINE MIR 117 164 -98 197 107 0 0 chr11 63017029 63017057 -85766415 + MIR SINE MIR 117 144 -118 21 57 0 0 chr11 63018975 63019010 -85764462 + GC_rich Low_complexity Low_complexity 1 35 0 1208 65 0 7 chr11 63021906 63022059 -85761413 - AluSq SINE Alu -20 293 142 712 308 156 15 chr11 63022181 63022296 -85761176 + L2 LINE L2 1488 1585 -1729 1670 159 7 33 chr11 63022296 63022428 -85761044 + AluJo SINE Alu 1 135 -177 2118 107 7 0 chr11 63022428 63022718 -85760754 + AluSp SINE Alu 1 292 -21 1670 159 7 33 chr11 63022718 63022887 -85760585 + AluJo SINE Alu 135 294 -18 712 308 156 15 chr11 63022887 63023290 -85760182 + L2 LINE L2 1585 2079 -1235 2219 104 0 3 chr11 63023373 63023672 -85759800 + AluSc SINE Alu 1 298 -11 1754 151 4 0 chr11 63023776 63024048 -85759424 - AluJb SINE Alu -8 304 32 650 179 107 0 chr11 63024089 63024201 -85759271 + FLAM_C SINE Alu 1 124 -19 317 251 287 34 chr11 63024208 63024244 -85759228 + L2 LINE L2 2166 2192 -1122 2296 83 7 7 chr11 63024244 63024544 -85758928 - AluSx SINE Alu -12 300 1 317 251 287 34 chr11 63024544 63024921 -85758551 + L2 LINE L2 2192 2684 -630 1008 118 0 0 chr11 63024938 63025073 -85758399 + AluSq/x SINE Alu 1 135 -177 2021 128 0 33 chr11 63025073 63025379 -85758093 + AluSx SINE Alu 1 296 -16 923 294 116 12 chr11 63025530 63025734 -85757738 + L2 LINE L2 2863 3044 -269 2110 102 14 3 chr11 63025734 63026027 -85757445 - AluSx SINE Alu -16 296 1 923 294 116 12 chr11 63026027 63026227 -85757245 + L2 LINE L2 3044 3309 -4 458 277 75 8 chr11 63026710 63026898 -85756574 - MIR SINE MIR -63 199 5 378 287 120 16 chr11 63026958 63027216 -85756256 + MER102b DNA MER1_type 28 312 -29 1528 159 68 0 chr11 63027337 63027643 -85755829 - AluJo SINE Alu 0 324 1 382 253 41 68 chr11 63027897 63027933 -85755539 - MIR SINE MIR -70 192 157 2202 42 49 7 chr11 63027933 63028218 -85755254 - AluY SINE Alu -14 297 1 2223 100 3 0 chr11 63028218 63028517 -85754955 - AluSx SINE Alu -12 300 1 382 253 41 68 chr11 63028517 63028625 -85754847 - MIR SINE MIR -103 159 51 2124 102 20 0 chr11 63028629 63028924 -85754548 - AluSq SINE Alu -12 301 1 711 146 0 0 chr11 63028930 63029033 -85754439 - AluSp/q SINE Alu -13 300 198 1429 119 0 0 chr11 63029758 63029959 -85753513 - AluSx SINE Alu -101 211 11 411 193 9 70 chr11 63029964 63030078 -85753394 + MIR3 SINE MIR 83 189 -19 386 290 76 14 chr11 63030242 63030387 -85753085 - MIR SINE MIR -100 162 9 302 272 52 92 chr11 63030543 63030716 -85752756 + MIR3 SINE MIR 36 201 -7 552 194 9 0 chr11 63032196 63032304 -85751168 - FLAM_A SINE Alu -26 116 8 613 222 117 38 chr11 63032334 63032548 -85750924 + L1MD1 LINE L1 5948 6188 -54 2683 26 0 0 chr11 63032548 63032855 -85750617 - AluY SINE Alu -4 307 1 613 222 117 38 chr11 63032855 63032906 -85750566 + L1MD1 LINE L1 6188 6234 -8 2290 78 0 3 chr11 63032908 63033204 -85750268 - AluY SINE Alu -16 295 1 844 138 69 75 chr11 63033231 63033405 -85750067 + AluJo SINE Alu 1 173 -139 1786 97 20 0 chr11 63033406 63033653 -85749819 - AluSp SINE Alu -61 252 1 2050 117 13 10 chr11 63033706 63034015 -85749457 + AluSx SINE Alu 1 310 -2 2268 86 0 7 chr11 63034109 63034413 -85749059 + AluSx SINE Alu 1 302 -10 2173 96 20 0 chr11 63034418 63034720 -85748752 + AluSq SINE Alu 1 308 -5 1576 227 42 71 chr11 63035702 63035783 -85747689 - MLT1D LTR MaLR 0 505 423 2266 95 0 0 chr11 63035783 63036077 -85747395 - AluY SINE Alu -17 294 1 1576 227 42 71 chr11 63036077 63036515 -85746957 - MLT1D LTR MaLR -82 423 1 395 250 107 9 chr11 63036519 63036631 -85746841 - MIR SINE MIR -62 146 24 2442 84 0 0 chr11 63037202 63037513 -85745959 + AluY SINE Alu 1 311 0 2222 118 0 3 chr11 63037531 63037844 -85745628 + AluSx SINE Alu 1 312 0 2221 100 13 3 chr11 63037844 63038145 -85745327 + AluSp SINE Alu 1 304 -9 2380 64 0 3 chr11 63039475 63039771 -85743701 + AluSc SINE Alu 1 295 -14 820 163 0 34 chr11 63039777 63039924 -85743548 + AluJo SINE Alu 1 142 -170 1957 125 0 16 chr11 63039927 63040231 -85743241 + AluSg SINE Alu 1 299 -11 274 311 123 8 chr11 63040632 63040754 -85742718 - MIR SINE MIR -5 257 122 806 148 7 28 chr11 63040754 63040896 -85742576 + L1MB7 LINE L1 6027 6165 -19 2261 95 0 0 chr11 63040939 63041235 -85742237 + AluSx SINE Alu 1 296 -16 283 268 70 0 chr11 63041239 63041310 -85742162 - MIR SINE MIR -87 121 46 193 276 17 0 chr11 63041907 63041965 -85741507 + L2 LINE L2 3198 3256 -57 240 35 0 0 chr11 63042764 63042793 -85740679 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 267 56 0 0 chr11 63043129 63043165 -85740307 - MIR SINE MIR -60 148 113 274 322 112 28 chr11 63043679 63043822 -85739650 + MIR3 SINE MIR 2 156 -52 188 250 0 89 chr11 63045579 63045635 -85737837 + MIR SINE MIR 96 146 -116 315 71 0 0 chr11 63047754 63047796 -85735676 + (TCCA)n Simple_repeat Simple_repeat 1 42 0 248 143 127 32 chr11 63048818 63048881 -85734591 - MIR3 SINE MIR -46 162 94 307 309 12 0 chr11 63049143 63049224 -85734248 - L3b LINE CR1 -181 1402 1321 318 333 29 1 chr11 63050679 63050796 -85732676 + MIR SINE MIR 22 141 -67 269 274 12 0 chr11 63050843 63050927 -85732545 + MER117 DNA MER1_type 97 181 -16 560 174 9 43 chr11 63051005 63051120 -85732352 + FLAM_A SINE Alu 13 123 -19 232 190 0 127 chr11 63052246 63052325 -85731147 - MIR3 SINE MIR -45 163 95 2080 98 0 0 chr11 63052553 63052830 -85730642 + AluSq SINE Alu 1 277 -36 194 225 42 28 chr11 63053157 63053228 -85730244 + MIR SINE MIR 64 135 -73 316 244 73 0 chr11 63053986 63054068 -85729404 + MIR SINE MIR 156 243 -19 272 240 31 62 chr11 63054172 63054268 -85729204 + MIR3 SINE MIR 88 180 -28 253 296 23 12 chr11 63054461 63054560 -85728912 + MIR SINE MIR 95 194 -63 465 321 41 20 chr11 63054646 63054842 -85728630 + MIR SINE MIR 15 214 -48 2351 103 0 0 chr11 63055548 63055858 -85727614 - AluSq SINE Alu -3 310 1 281 213 107 0 chr11 63055865 63055940 -85727532 + MIR SINE MIR 108 190 -72 349 279 39 19 chr11 63056031 63056178 -85727294 + MIR SINE MIR 28 178 -63 233 286 30 0 chr11 63056337 63056450 -85727022 - L2 LINE L2 -276 2996 2882 1041 145 78 0 chr11 63056674 63056840 -85726632 + AluSg SINE Alu 1 179 -131 306 179 0 0 chr11 63056850 63056906 -85726566 + AluSg/q SINE Alu 244 299 -4 571 247 126 24 chr11 63057285 63057500 -85725972 + MIR SINE MIR 18 252 -10 867 129 0 0 chr11 63057517 63057641 -85725831 - FLAM_C SINE Alu -5 128 5 187 256 0 0 chr11 63058452 63058495 -85724977 + L2 LINE L2 3017 3059 -213 231 159 32 79 chr11 63058709 63058772 -85724700 + MIR SINE MIR 80 139 -123 555 237 107 17 chr11 63058802 63058914 -85724558 + MIR SINE MIR 70 205 -57 1801 134 46 0 chr11 63058914 63059198 -85724274 + AluJo SINE Alu 4 300 -12 555 237 107 17 chr11 63059198 63059262 -85724210 + MIR SINE MIR 205 262 0 2095 105 0 13 chr11 63059334 63059638 -85723834 + AluSq SINE Alu 1 300 -13 419 284 83 18 chr11 63059638 63059807 -85723665 + MIR SINE MIR 68 247 -15 479 326 16 27 chr11 63060269 63060453 -85723019 - MIR SINE MIR -72 190 9 234 0 0 0 chr11 63062221 63062247 -85721225 + (T)n Simple_repeat Simple_repeat 1 26 0 332 295 25 8 chr11 63063271 63063393 -85720079 + L2 LINE L2 3134 3257 -15 234 0 0 0 chr11 63063396 63063422 -85720050 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 234 224 20 0 chr11 63064526 63064575 -85718897 - MIR SINE MIR -98 164 115 257 233 55 14 chr11 63065546 63065619 -85717853 - MIR SINE MIR -88 174 99 26 50 0 0 chr11 63067031 63067071 -85716401 + GC_rich Low_complexity Low_complexity 1 40 0 27 0 0 0 chr11 63067197 63067224 -85716248 + GC_rich Low_complexity Low_complexity 1 27 0 27 121 0 0 chr11 63067441 63067615 -85715857 + GC_rich Low_complexity Low_complexity 1 174 0 23 0 0 0 chr11 63067657 63067680 -85715792 + GC_rich Low_complexity Low_complexity 1 23 0 210 37 0 0 chr11 63067749 63067776 -85715696 + (G)n Simple_repeat Simple_repeat 1 27 0 204 114 0 29 chr11 63070056 63070091 -85713381 + (GGGTG)n Simple_repeat Simple_repeat 4 37 0 264 30 0 0 chr11 63070401 63070434 -85713038 + (CA)n Simple_repeat Simple_repeat 2 34 0 243 140 0 0 chr11 63070480 63070530 -85712942 + (A)n Simple_repeat Simple_repeat 1 50 0 314 284 9 78 chr11 63074077 63074193 -85709279 - MIR SINE MIR -83 125 18 357 62 0 0 chr11 63074836 63074884 -85708588 + (CA)n Simple_repeat Simple_repeat 2 49 0 1434 63 0 0 chr11 63074921 63075096 -85708376 + AluSp SINE Alu 135 309 -4 261 83 0 0 chr11 63077309 63077345 -85706127 + (GAAA)n Simple_repeat Simple_repeat 2 37 0 2376 97 0 0 chr11 63080600 63080911 -85702561 + AluSq SINE Alu 1 311 -2 2334 97 3 0 chr11 63081847 63082155 -85701317 - AluSp SINE Alu -4 309 1 396 174 29 0 chr11 63082206 63082275 -85701197 - tRNA-Gly-GGG tRNA tRNA -3 71 1 394 280 51 19 chr11 63082285 63082442 -85701030 + L2 LINE L2 3151 3312 -1 1958 148 68 3 chr11 63082561 63082900 -85700572 - MER46B DNA MER2_type 0 236 1 1056 181 70 4 chr11 63082955 63083214 -85700258 + L1MB8 LINE L1 5587 5862 -316 1919 127 3 45 chr11 63083252 63083394 -85700078 + AluJo SINE Alu 1 147 -165 2003 93 0 18 chr11 63083394 63083673 -85699799 + AluSq SINE Alu 39 312 -1 1919 127 3 45 chr11 63083673 63083844 -85699628 + AluJo SINE Alu 147 301 -11 236 344 0 0 chr11 63085214 63085278 -85698194 + MIR SINE MIR 15 78 -184 522 159 23 0 chr11 63085318 63085406 -85698066 + BC200 scRNA scRNA 2 91 -109 201 175 0 53 chr11 63085471 63085528 -85697944 + A-rich Low_complexity Low_complexity 6 59 0 218 281 171 0 chr11 63085701 63085783 -85697689 + MIR SINE MIR 117 212 -50 368 284 82 0 chr11 63089149 63089314 -85694158 - MIR SINE MIR -57 151 15 2067 119 3 3 chr11 63089846 63090139 -85693333 + AluSx SINE Alu 1 293 -19 1573 179 15 0 chr11 63090148 63090421 -85693051 + AluJo SINE Alu 1 277 -35 2208 106 0 7 chr11 63090423 63090724 -85692748 - AluSg SINE Alu -11 299 1 2077 126 3 0 chr11 63090724 63091018 -85692454 - AluSx SINE Alu -17 295 1 1553 220 0 0 chr11 63091018 63091313 -85692159 - AluJb SINE Alu -16 296 2 1776 149 35 3 chr11 63091362 63091651 -85691821 - AluJb SINE Alu -14 298 1 480 328 20 25 chr11 63092545 63092684 -85690788 + MIR SINE MIR 60 199 -63 1854 152 0 23 chr11 63092684 63092994 -85690478 + AluJb SINE Alu 1 303 -9 480 328 20 25 chr11 63092994 63093058 -85690414 + MIR SINE MIR 199 262 0 489 99 22 11 chr11 63093891 63093972 -85689500 + U6 snRNA snRNA 16 100 -7 2281 88 3 3 chr11 63093972 63094269 -85689203 - AluSp SINE Alu -16 297 1 36 23 0 0 chr11 63094339 63094382 -85689090 + AT_rich Low_complexity Low_complexity 1 43 0 1846 162 0 32 chr11 63094599 63094907 -85688565 - AluJo SINE Alu -14 298 1 218 264 132 90 chr11 63095196 63095256 -85688216 + L2 LINE L2 3164 3220 -93 2173 85 7 10 chr11 63095256 63095549 -85687923 - AluSq SINE Alu -21 292 1 218 264 132 90 chr11 63095549 63095632 -85687840 + L2 LINE L2 3220 3313 0 2160 98 0 16 chr11 63097243 63097548 -85685924 - AluSx SINE Alu -12 300 1 2466 55 3 13 chr11 63097902 63098213 -85685259 + AluY SINE Alu 1 308 -3 1420 110 24 5 chr11 63098867 63099076 -85684396 - AluJb SINE Alu -21 291 79 2136 128 0 3 chr11 63099160 63099472 -85684000 + AluSx SINE Alu 1 311 -1 1686 172 16 16 chr11 63101019 63101151 -85682321 + AluJb SINE Alu 1 132 -180 2202 109 0 3 chr11 63101151 63101453 -85682019 + AluSg SINE Alu 1 301 -9 1686 172 16 16 chr11 63101453 63101623 -85681849 + AluJb SINE Alu 131 303 -9 2135 129 0 3 chr11 63102624 63102933 -85680539 + AluSx SINE Alu 1 308 -4 246 62 0 0 chr11 63103656 63103688 -85679784 + (TGGGGG)n Simple_repeat Simple_repeat 4 35 0 304 374 7 29 chr11 63105378 63105517 -85677955 + L1MC4 LINE L1 6568 6703 -1339 * 332 279 149 32 chr11 63105425 63105579 -85677893 - L1MC4 LINE L1 -1339 6703 6532 370 302 125 67 chr11 63105579 63106043 -85677429 + L2 LINE L2 2808 3298 -15 811 147 23 0 chr11 63106198 63106327 -85677145 + AluJb SINE Alu 1 132 -180 408 284 71 19 chr11 63106501 63106656 -85676816 + MIR3 SINE MIR 17 179 -29 24 32 0 0 chr11 63108216 63108247 -85675225 + AT_rich Low_complexity Low_complexity 1 31 0 1297 159 0 0 chr11 63108254 63108461 -85675011 - AluJo SINE Alu -105 207 1 205 300 33 67 chr11 63108484 63108634 -85674838 - L2 LINE L2 -5 3308 3164 1735 180 0 3 chr11 63109243 63109543 -85673929 + AluJb SINE Alu 1 299 -13 1954 113 0 0 chr11 63110200 63110466 -85673006 - AluSx SINE Alu -11 301 36 899 164 0 0 chr11 63111185 63111325 -85672147 + AluJb SINE Alu 154 293 -19 1252 184 0 5 chr11 63111380 63111592 -85671880 + AluJb SINE Alu 1 211 -101 31 82 0 0 chr11 63111697 63111770 -85671702 + GC_rich Low_complexity Low_complexity 1 73 0 282 216 0 0 chr11 63111975 63112049 -85671423 + (TTCA)n Simple_repeat Simple_repeat 1 74 0 508 316 28 28 chr11 63112192 63112410 -85671062 + MIR SINE MIR 35 252 -10 321 303 42 17 chr11 63113041 63113160 -85670312 - L1ME4a LINE L1 -61 6060 5939 191 356 83 37 chr11 63113179 63113395 -85670077 + L2 LINE L2 3043 3268 -4 1213 224 83 7 chr11 63113453 63113567 -85669905 + AluJo SINE Alu 2 106 -196 2124 120 0 0 chr11 63113567 63113859 -85669613 - AluSq SINE Alu -20 293 2 1213 224 83 7 chr11 63113859 63114021 -85669451 + AluJo SINE Alu 106 299 -3 303 339 141 37 chr11 63114126 63114501 -85668971 - L2 LINE L2 -24 3248 2835 299 383 75 0 chr11 63114969 63115170 -85668302 + MIR SINE MIR 31 246 -16 2235 103 3 3 chr11 63115641 63115953 -85667519 + AluSx SINE Alu 1 312 0 2107 99 24 3 chr11 63115954 63116246 -85667226 + AluSp SINE Alu 1 298 -15 1529 159 68 0 chr11 63116536 63116842 -85666630 + AluJo SINE Alu 1 324 0 378 287 120 16 chr11 63116963 63117221 -85666251 - MER102b DNA MER1_type -29 312 28 458 277 75 8 chr11 63117281 63117469 -85666003 + MIR SINE MIR 5 199 -63 810 314 62 18 chr11 63117952 63118152 -85665320 - L2 LINE L2 -4 3309 3086 1917 121 10 14 chr11 63118152 63118449 -85665023 + AluSx SINE Alu 1 296 -16 810 314 62 18 chr11 63118449 63118586 -85664886 - L2 LINE L2 -227 3086 2957 201 83 24 71 chr11 63168741 63168825 -85614647 + (CGGG)n Simple_repeat Simple_repeat 2 81 0 388 138 12 38 chr11 63168840 63169000 -85614472 + (CCGG)n Simple_repeat Simple_repeat 4 159 0 204 135 0 0 chr11 63169659 63169696 -85613776 + (GGGGA)n Simple_repeat Simple_repeat 3 39 0 222 128 0 0 chr11 63169780 63169819 -85613653 + (GAAA)n Simple_repeat Simple_repeat 1 39 0 27 0 0 0 chr11 63171626 63171653 -85611819 + GC_rich Low_complexity Low_complexity 1 27 0 2122 101 0 0 chr11 63172475 63172742 -85610730 - AluSx SINE Alu -12 300 34 2448 86 0 3 chr11 63172757 63173061 -85610411 - AluSx SINE Alu -9 303 1 1804 174 35 0 chr11 63173387 63173674 -85609798 + AluSx SINE Alu 8 304 -8 23 78 0 0 chr11 63174030 63174081 -85609391 + AT_rich Low_complexity Low_complexity 1 51 0 270 246 14 14 chr11 63175036 63175105 -85608367 + L2 LINE L2 2182 2250 -1064 1873 112 0 8 chr11 63175305 63175564 -85607908 - AluY SINE Alu -14 297 41 1305 133 0 25 chr11 63175582 63175778 -85607694 - AluSx SINE Alu -121 191 1 2575 238 105 51 chr11 63175779 63176347 -85607125 - L1M4 LINE L1 -2300 3846 3310 1627 157 23 75 chr11 63176347 63176652 -85606820 + AluJo SINE Alu 12 300 -12 2575 238 105 51 chr11 63176652 63176860 -85606612 - L1M4 LINE L1 -2836 3310 3115 2440 101 0 0 chr11 63176860 63177168 -85606304 + AluSc SINE Alu 1 308 -1 2575 238 105 51 chr11 63177168 63177431 -85606041 - L1M4 LINE L1 -3031 3115 2867 2154 138 3 0 chr11 63177431 63177735 -85605737 + AluSx SINE Alu 1 305 -7 2575 238 105 51 chr11 63177735 63177986 -85605486 - L1M4 LINE L1 -3279 2867 2631 1542 122 28 125 chr11 63177986 63178306 -85605166 - AluJo SINE Alu -23 289 1 2575 238 105 51 chr11 63178306 63178532 -85604940 - L1M4 LINE L1 -3515 2631 2246 2343 106 0 0 chr11 63178544 63178847 -85604625 + AluSx SINE Alu 1 303 -9 752 196 57 25 chr11 63178849 63179007 -85604465 + AluJb SINE Alu 124 286 -26 1938 154 0 29 chr11 63179051 63179363 -85604109 + AluJb SINE Alu 1 303 -9 2177 72 7 31 chr11 63179465 63179757 -85603715 - AluY SINE Alu -26 285 1 1870 118 15 7 chr11 63179775 63180047 -85603425 - AluSx SINE Alu -18 294 21 849 121 9 0 chr11 63180047 63180163 -85603309 - AluSq/x SINE Alu -171 141 25 2359 96 0 3 chr11 63180178 63180471 -85603001 - AluSc SINE Alu -17 292 1 946 309 55 24 chr11 63181632 63182011 -85601461 - L2 LINE L2 -4 3309 2919 768 273 166 15 chr11 63182031 63182357 -85601115 - L2 LINE L2 -838 2476 2102 214 298 69 75 chr11 63182362 63182467 -85601005 - L2 LINE L2 -2 3311 3206 2308 104 7 0 chr11 63182467 63182764 -85600708 - AluSp SINE Alu -14 299 1 214 298 69 75 chr11 63182764 63182846 -85600626 - L2 LINE L2 -107 3206 3125 463 258 212 5 chr11 63182933 63183150 -85600322 - L2 LINE L2 -1208 2106 1845 1662 171 3 56 chr11 63183587 63183892 -85599580 + AluJo SINE Alu 4 292 -20 1168 141 0 27 chr11 63183894 63184078 -85599394 + AluJb SINE Alu 133 311 -1 811 190 7 0 chr11 63185804 63185946 -85597526 - AluJo SINE Alu -152 160 18 1072 170 0 0 chr11 63186022 63186193 -85597279 + AluSg/x SINE Alu 138 308 -4 381 202 11 0 chr11 63186197 63186286 -85597186 + L1M4 LINE L1 2953 3042 -3104 1913 126 9 49 chr11 63186286 63186421 -85597051 + AluJb SINE Alu 1 140 -172 2121 99 38 3 chr11 63186421 63186713 -85596759 + AluSg SINE Alu 1 302 -8 1913 126 9 49 chr11 63186713 63186902 -85596570 + AluJb SINE Alu 140 312 0 261 0 0 0 chr11 63187056 63187085 -85596387 + (A)n Simple_repeat Simple_repeat 1 29 0 1918 97 0 90 chr11 63187090 63187411 -85596061 + AluSg SINE Alu 3 294 -16 2297 209 52 83 chr11 63187413 63187931 -85595541 + MER21B LTR ERV1 12 500 -363 2195 125 0 0 chr11 63187931 63188228 -85595244 - AluSx SINE Alu -15 297 1 2297 209 52 83 chr11 63188228 63188476 -85594996 + MER21B LTR ERV1 500 754 -109 396 241 71 0 chr11 63189148 63189260 -85594212 - L2 LINE L2 -7 3265 3146 499 88 0 0 chr11 63189879 63189947 -85593525 + AluS SINE Alu 2 69 -244 2519 72 0 10 chr11 63190375 63190679 -85592793 - AluY SINE Alu -10 301 1 2359 103 0 7 chr11 63190681 63190991 -85592481 - AluSq SINE Alu -5 308 1 420 235 15 15 chr11 63191025 63191157 -85592315 + L2 LINE L2 1977 2108 -1206 305 274 65 32 chr11 63191185 63191309 -85592163 + L2 LINE L2 3182 3309 -4 372 304 114 0 chr11 63191340 63191498 -85591974 + L2 LINE L2 2162 2337 -977 460 65 0 0 chr11 63191498 63191560 -85591912 + AluSc SINE Alu 233 294 -15 925 276 145 24 chr11 63191560 63192429 -85591043 + L2 LINE L2 2330 3312 -1 2025 121 24 7 chr11 63192727 63193016 -85590456 - AluSx SINE Alu -18 294 1 23 0 0 0 chr11 63194471 63194494 -85588978 + AT_rich Low_complexity Low_complexity 1 23 0 225 94 0 0 chr11 63194869 63194901 -85588571 + (T)n Simple_repeat Simple_repeat 1 32 0 2429 74 10 0 chr11 63195763 63196060 -85587412 - AluSc SINE Alu -9 300 1 1438 216 52 92 chr11 63196181 63196684 -85586788 + LTR33A LTR ERVL 4 485 -38 1949 116 7 46 chr11 63196684 63196987 -85586485 + AluSx SINE Alu 1 291 -21 1438 216 52 92 chr11 63196987 63197025 -85586447 + LTR33A LTR ERVL 485 523 0 291 270 14 0 chr11 63197072 63197146 -85586326 - MIR SINE MIR -111 151 77 2125 113 3 10 chr11 63197381 63197682 -85585790 - AluSg1 SINE Alu -10 299 1 2354 85 14 0 chr11 63197682 63197976 -85585496 - AluSp SINE Alu -15 298 1 607 165 130 0 chr11 63198002 63198117 -85585355 - FLAM_C SINE Alu -3 130 1 1092 159 0 0 chr11 63198177 63198340 -85585132 + AluSg/x SINE Alu 137 299 -13 583 291 123 13 chr11 63198340 63198567 -85584905 + MER90 LTR ERV1 324 575 0 311 187 93 0 chr11 63198567 63198642 -85584830 + HsTC2 DNA Tc2 1658 1739 -159 836 138 85 0 chr11 63198655 63198785 -85584687 + AluJb SINE Alu 1 141 -171 2372 101 0 3 chr11 63198787 63199094 -85584378 + AluSq SINE Alu 1 306 -7 2189 122 0 3 chr11 63199096 63199391 -85584081 + AluSq SINE Alu 2 295 -18 2498 64 0 3 chr11 63199391 63199687 -85583785 + AluY SINE Alu 1 295 -16 1941 162 57 53 chr11 63199687 63199788 -85583684 - L1MB1 LINE L1 -137 6031 5932 1652 176 7 20 chr11 63199788 63200084 -85583388 - AluJo SINE Alu -20 292 1 1941 162 57 53 chr11 63200084 63200466 -85583006 - L1MB1 LINE L1 -236 5932 5497 2233 113 27 0 chr11 63200559 63200859 -85582613 + AluSx SINE Alu 1 308 -4 721 130 0 49 chr11 63201207 63201283 -85582189 - FLAM_C SINE Alu -194 118 49 2350 107 28 6 chr11 63201283 63201639 -85581833 + THE1B LTR MaLR 1 364 0 721 130 0 49 chr11 63201639 63201685 -85581787 - FLAM_C SINE Alu -263 49 2 2223 110 3 13 chr11 63201805 63202105 -85581367 - AluSx SINE Alu -15 297 1 973 289 91 65 chr11 63202106 63202664 -85580808 - MLT1K LTR MaLR -6 582 10 2263 80 36 13 chr11 63203062 63203363 -85580109 + AluY SINE Alu 1 308 -3 1154 130 0 0 chr11 63203363 63203517 -85579955 + AluSg/x SINE Alu 132 285 -25 25 51 0 0 chr11 63203517 63203556 -85579916 + AT_rich Low_complexity Low_complexity 1 39 0 955 166 0 18 chr11 63203566 63203735 -85579737 + FRAM SINE Alu 1 166 0 580 207 62 0 chr11 63204028 63204173 -85579299 - HsTC2 DNA Tc2 -3 1895 1742 2421 104 0 0 chr11 63204173 63204480 -85578992 + AluSx SINE Alu 1 307 -5 2103 136 3 3 chr11 63204491 63204792 -85578680 + AluSx SINE Alu 1 301 -11 1999 134 0 0 chr11 63205050 63205326 -85578146 - AluSx SINE Alu -3 309 34 2448 86 0 3 chr11 63205341 63205645 -85577827 - AluSx SINE Alu -9 303 1 2445 88 3 0 chr11 63205971 63206268 -85577204 + AluSq SINE Alu 8 305 -8 365 121 15 15 chr11 63206391 63206457 -85577015 - MLT1D LTR MaLR 0 505 440 2719 26 3 0 chr11 63206459 63206761 -85576711 + AluY SINE Alu 1 303 -8 1074 119 0 0 chr11 63206773 63206916 -85576556 + FRAM SINE Alu 18 160 -16 1709 191 88 38 chr11 63206918 63207341 -85576131 - MLT1D LTR MaLR -61 444 1 292 204 176 28 chr11 63207370 63207478 -85575994 + L2 LINE L2 3149 3272 0 1753 164 25 0 chr11 63207607 63207882 -85575590 - AluJo SINE Alu -13 299 18 1489 188 12 67 chr11 63207908 63208238 -85575234 + AluJo SINE Alu 1 312 0 2519 72 0 10 chr11 63209444 63209748 -85573724 - AluY SINE Alu -10 301 1 2384 100 0 7 chr11 63209750 63210060 -85573412 - AluSq SINE Alu -5 308 1 420 235 15 15 chr11 63210094 63210226 -85573246 + L2 LINE L2 1977 2108 -1206 305 274 65 32 chr11 63210254 63210378 -85573094 + L2 LINE L2 3182 3309 -4 372 304 114 0 chr11 63210409 63210567 -85572905 + L2 LINE L2 2162 2337 -977 460 65 0 0 chr11 63210567 63210629 -85572843 + AluSc SINE Alu 233 294 -15 925 276 145 24 chr11 63210629 63211498 -85571974 + L2 LINE L2 2330 3312 -1 2034 121 24 7 chr11 63211796 63212086 -85571386 - AluSx SINE Alu -17 295 1 23 0 0 0 chr11 63213544 63213567 -85569905 + AT_rich Low_complexity Low_complexity 1 23 0 2476 84 0 22 chr11 63213950 63214270 -85569202 - AluSq SINE Alu 0 313 1 2245 79 45 7 chr11 63214769 63215060 -85568412 - AluSx SINE Alu -10 302 1 430 241 71 0 chr11 63215678 63215790 -85567682 + L2 LINE L2 3146 3265 -7 2208 203 55 86 chr11 63216462 63216710 -85566762 - MER21B LTR ERV1 -109 754 500 2128 125 7 0 chr11 63216710 63217006 -85566466 + AluSx SINE Alu 1 298 -14 2208 203 55 86 chr11 63217006 63217524 -85565948 - MER21B LTR ERV1 -363 500 12 1908 97 0 90 chr11 63217526 63217847 -85565625 - AluSg SINE Alu -16 294 3 2303 98 0 13 chr11 63217852 63218157 -85565315 - AluSq SINE Alu -12 301 1 360 210 1 49 chr11 63219043 63219135 -85564337 - MIR SINE MIR -63 145 64 2206 113 10 3 chr11 63219137 63219446 -85564026 + AluSx SINE Alu 1 311 -1 1526 139 85 19 chr11 63219471 63219730 -85563742 - AluJo SINE Alu -36 276 1 * 1673 154 64 24 chr11 63219729 63220027 -85563445 - AluJb SINE Alu -2 310 1 2163 108 4 0 chr11 63220051 63220366 -85563106 + AluSg SINE Alu 1 316 0 21 57 0 0 chr11 63220366 63220401 -85563071 + AT_rich Low_complexity Low_complexity 1 35 0 1198 237 213 7 chr11 63220893 63221306 -85562166 + L2 LINE L2 2428 2925 -389 344 183 6 0 chr11 63221337 63221428 -85562044 - Alu SINE Alu -251 51 1 696 270 79 62 chr11 63221428 63221631 -85561841 + L2 LINE L2 3005 3217 -96 2070 97 0 31 chr11 63221631 63221951 -85561521 - AluSq SINE Alu 0 312 2 696 270 79 62 chr11 63221951 63222050 -85561422 + L2 LINE L2 3217 3313 0 1021 147 5 38 chr11 63222353 63222433 -85561039 - MER45A DNA AcHobo -1403 178 97 2294 102 0 3 chr11 63222433 63222727 -85560745 + AluSx SINE Alu 1 293 -19 1021 147 5 38 chr11 63222727 63222830 -85560642 - MER45A DNA AcHobo -1484 97 1 352 256 12 0 chr11 63223846 63223928 -85559544 - MIR3 SINE MIR -22 186 104 299 243 27 72 chr11 63224031 63224142 -85559330 - MIR SINE MIR -77 131 26 204 260 10 29 chr11 63225068 63225172 -85558300 + (CGCGG)n Simple_repeat Simple_repeat 3 104 0 2192 100 31 0 chr11 63228045 63228336 -85555136 - AluSc SINE Alu -9 300 1 182 175 75 75 chr11 63229187 63229267 -85554205 - L2 LINE L2 -2850 464 385 24 0 0 0 chr11 63229435 63229459 -85554013 + AT_rich Low_complexity Low_complexity 1 24 0 1839 80 8 8 chr11 63229462 63229700 -85553772 - AluSx SINE Alu -19 293 56 1815 178 0 13 chr11 63230028 63230326 -85553146 + AluJb SINE Alu 1 294 -18 2105 121 7 3 chr11 63231563 63231852 -85551620 - AluSx SINE Alu -21 291 2 1746 155 3 79 chr11 63232065 63232194 -85551278 + AluJb SINE Alu 1 138 -174 2111 112 21 3 chr11 63232194 63232479 -85550993 - AluSg SINE Alu -20 290 1 2513 54 0 3 chr11 63232487 63232785 -85550687 - AluY SINE Alu -14 297 1 1746 155 3 79 chr11 63232785 63232963 -85550509 + AluJb SINE Alu 145 293 -19 2208 96 9 53 chr11 63234204 63234379 -85549093 - AluSc SINE Alu -1 308 152 2494 58 0 35 chr11 63234379 63234690 -85548782 - AluY SINE Alu -11 300 1 2208 96 9 53 chr11 63234690 63234836 -85548636 - AluSc SINE Alu -157 152 1 830 156 7 22 chr11 63234845 63234980 -85548492 - FRAM SINE Alu -23 153 21 715 193 99 80 chr11 63235279 63235300 -85548172 + MIR SINE MIR 15 34 -228 2196 129 0 0 chr11 63235300 63235595 -85547877 + AluSx SINE Alu 1 295 -17 715 193 99 80 chr11 63235595 63235785 -85547687 + MIR SINE MIR 34 230 -32 2107 86 7 70 chr11 63235966 63236297 -85547175 - AluSq SINE Alu 0 312 1 588 205 31 0 chr11 63236654 63236781 -85546691 - FLAM_C SINE Alu 0 143 13 462 151 0 47 chr11 63237170 63237256 -85546216 + FLAM_A SINE Alu 41 122 -20 6787 174 63 33 chr11 63237812 63238947 -85544525 + Charlie1 DNA MER1_type 5 1201 -1560 2405 72 24 0 chr11 63238947 63239238 -85544234 + AluSq SINE Alu 1 298 -15 6787 174 63 33 chr11 63239238 63239661 -85543811 + Charlie1 DNA MER1_type 1201 1610 -1151 2153 113 0 0 chr11 63239662 63240003 -85543469 - AluSx SINE Alu 0 341 1 342 0 0 0 chr11 63240017 63240055 -85543417 + (TG)n Simple_repeat Simple_repeat 1 38 0 1045 184 32 60 chr11 63240060 63240342 -85543130 - AluSx SINE Alu -38 274 1 1281 131 16 0 chr11 63240635 63240818 -85542654 - AluSx SINE Alu -126 186 1 1243 152 0 0 chr11 63240820 63241017 -85542455 - L1MCa LINE L1 -6196 230 34 904 92 0 17 chr11 63241254 63241424 -85542048 - AluSg/x SINE Alu 0 312 177 1460 226 3 10 chr11 63241426 63241723 -85541749 - AluJo SINE Alu -17 295 1 2264 117 0 0 chr11 63242063 63242362 -85541110 + AluSx SINE Alu 1 299 -13 2251 112 0 3 chr11 63242433 63242729 -85540743 + AluSg SINE Alu 1 295 -15 491 285 62 39 chr11 63242804 63242846 -85540626 - L1MEd LINE L1 -1176 1314 1274 2089 116 9 35 chr11 63242846 63243165 -85540307 - AluSx SINE Alu -1 311 1 491 285 62 39 chr11 63243165 63243181 -85540291 - L1MEd LINE L1 -1216 1274 1260 2375 100 0 7 chr11 63243181 63243482 -85539990 - AluSx SINE Alu -13 299 1 491 285 62 39 chr11 63243482 63243690 -85539782 - L1MEd LINE L1 -1230 1260 952 2178 116 7 0 chr11 63243715 63244009 -85539463 - AluSx SINE Alu -16 296 1 278 321 143 0 chr11 63244158 63244270 -85539202 + L2 LINE L2 2244 2371 -943 1203 299 43 20 chr11 63244270 63244708 -85538764 - MLT1K LTR MaLR -5 583 136 451 296 0 0 chr11 63244713 63244838 -85538634 - MLT1K LTR MaLR -262 326 202 433 111 122 11 chr11 63244866 63244956 -85538516 + MER53 DNA DNA 1 100 -89 532 278 174 38 chr11 63245369 63245714 -85537758 + MLT1L LTR MaLR 206 597 -18 301 330 118 33 chr11 63245756 63246086 -85537386 + L2 LINE L2 2366 2723 -591 354 156 0 0 chr11 63246087 63246151 -85537321 + (CA)n Simple_repeat Simple_repeat 2 65 0 2358 62 38 3 chr11 63246195 63246485 -85536987 - AluY SINE Alu -11 300 1 880 263 102 75 chr11 63246883 63247441 -85536031 + MLT1K LTR MaLR 10 582 -6 2204 110 3 13 chr11 63247442 63247741 -85535731 + AluSx SINE Alu 1 296 -16 775 130 0 49 chr11 63247862 63247908 -85535564 + FLAM_C SINE Alu 2 49 -263 2493 107 28 6 chr11 63247908 63248264 -85535208 - THE1B LTR MaLR 0 364 1 775 130 0 49 chr11 63248264 63248340 -85535132 + FLAM_C SINE Alu 49 118 -194 2221 113 27 0 chr11 63248688 63248988 -85534484 - AluSx SINE Alu -4 308 1 1724 163 76 2 chr11 63249081 63249462 -85534010 + L1MB1 LINE L1 5497 5949 -219 1607 169 10 24 chr11 63249463 63249759 -85533713 + AluJo SINE Alu 1 292 -20 2316 88 3 7 chr11 63249860 63250157 -85533315 - AluY SINE Alu -15 296 1 410 197 26 0 chr11 63250176 63250252 -85533220 + MER2 DNA MER2_type 268 345 0 965 218 145 33 chr11 63250256 63250587 -85532885 + MLT1E LTR MaLR 203 570 -23 251 252 143 0 chr11 63250587 63250706 -85532766 - L1M4 LINE L1 -1318 4828 4693 1191 214 0 0 chr11 63250738 63250944 -85532528 + AluJo SINE Alu 6 211 -101 480 35 0 0 chr11 63250954 63251012 -85532460 + (GA)n Simple_repeat Simple_repeat 1 58 0 2196 218 36 64 chr11 63251024 63251272 -85532200 - L1M4 LINE L1 -1538 4608 4354 1522 139 155 4 chr11 63251272 63251523 -85531949 + AluSx SINE Alu 1 289 -23 2196 218 36 64 chr11 63251523 63251781 -85531691 - L1M4 LINE L1 -1792 4354 4090 396 0 0 0 chr11 63251781 63251825 -85531647 + (TG)n Simple_repeat Simple_repeat 2 45 0 2229 96 18 0 chr11 63251825 63252105 -85531367 - AluSx SINE Alu -27 285 1 1721 134 16 4 chr11 63252106 63252360 -85531112 - AluSx SINE Alu -21 291 35 2196 218 36 64 chr11 63252360 63252550 -85530922 - L1M4 LINE L1 -2054 4092 3928 270 219 0 0 chr11 63252586 63252650 -85530822 + (TATG)n Simple_repeat Simple_repeat 4 67 0 1922 132 0 66 chr11 63252654 63252972 -85530500 - AluJo SINE Alu -15 297 1 2462 71 14 0 chr11 63253060 63253355 -85530117 - AluY SINE Alu -12 299 1 268 193 36 72 chr11 63253355 63253438 -85530034 - L1M4 LINE L1 -1465 4681 4602 2485 45 7 0 chr11 63253446 63253732 -85529740 + AluY SINE Alu 7 294 -17 1251 174 5 0 chr11 63254152 63254348 -85529124 + AluJo SINE Alu 1 197 -115 611 154 218 0 chr11 63254373 63254483 -85528989 - AluJb SINE Alu -23 289 156 2215 106 10 0 chr11 63254526 63254819 -85528653 + AluSg SINE Alu 1 296 -14 1675 156 13 39 chr11 63255099 63255406 -85528066 - AluJb SINE Alu 0 312 14 2083 122 7 7 chr11 63255671 63255967 -85527505 - AluSx SINE Alu -16 296 1 2457 84 3 0 chr11 63256293 63256590 -85526882 + AluSq SINE Alu 8 305 -8 368 121 15 15 chr11 63256713 63256779 -85526693 - MLT1D LTR MaLR 0 505 440 2685 23 0 3 chr11 63256781 63257081 -85526391 + AluY SINE Alu 1 299 -12 424 62 215 0 chr11 63257091 63257156 -85526316 + AluY SINE Alu 72 150 -161 204 40 0 0 chr11 63257265 63257290 -85526182 + (A)n Simple_repeat Simple_repeat 1 25 0 444 221 31 62 chr11 63257291 63257549 -85525923 + L1M4 LINE L1 3028 3277 -2869 1649 181 17 10 chr11 63257549 63257652 -85525820 + AluJo SINE Alu 12 113 -199 2033 164 3 0 chr11 63257652 63257962 -85525510 - AluSx SINE Alu -1 311 1 1649 181 17 10 chr11 63257962 63258157 -85525315 + AluJo SINE Alu 113 312 0 1356 101 5 21 chr11 63258178 63258366 -85525106 + AluSq SINE Alu 1 185 -128 1817 184 0 3 chr11 63258369 63258652 -85524820 + AluSx SINE Alu 6 287 -25 4710 81 5 16 chr11 63258711 63258792 -85524680 + LTR10E LTR ERV1 1 81 -552 2100 118 37 0 chr11 63258792 63259089 -85524383 + AluSx SINE Alu 1 308 -4 4710 81 5 16 chr11 63259089 63259647 -85523825 + LTR10E LTR ERV1 81 633 0 2159 151 0 0 chr11 63259656 63259968 -85523504 - AluSx SINE Alu 0 312 1 366 381 16 5 chr11 63259991 63260180 -85523292 + L1M4 LINE L1 4606 4796 -1350 237 274 21 11 chr11 63260249 63260344 -85523128 + L1P LINE L1 4882 4977 -1169 2088 121 0 14 chr11 63260402 63260692 -85522780 - AluSx SINE Alu -26 286 1 22 56 0 0 chr11 63260698 63260734 -85522738 + AT_rich Low_complexity Low_complexity 1 36 0 447 256 67 18 chr11 63260937 63261101 -85522371 + L1MC4 LINE L1 6457 6628 -1414 501 242 0 0 chr11 63261113 63261233 -85522239 + L1MC4 LINE L1 6888 7007 -1035 1685 176 14 0 chr11 63261238 63261549 -85521923 + AluJo SINE Alu 5 319 0 2279 102 7 0 chr11 63261551 63261846 -85521626 + AluSx SINE Alu 1 297 -15 2185 105 7 0 chr11 63261891 63262185 -85521287 + AluSq SINE Alu 1 296 -17 688 135 50 78 chr11 63262217 63262358 -85521114 + AluJo SINE Alu 2 138 -174 749 90 0 0 chr11 63262358 63262469 -85521003 + L1M3 LINE L1 5328 5438 -742 1576 123 5 0 chr11 63262475 63262687 -85520785 - AluSx SINE Alu -99 213 1 1300 112 91 0 chr11 63262713 63262910 -85520562 - AluSg/x SINE Alu -14 298 84 2442 77 0 3 chr11 63262995 63263295 -85520177 - AluSg1 SINE Alu -10 299 1 2203 124 0 3 chr11 63263298 63263597 -85519875 - AluSx SINE Alu -14 298 1 797 180 0 0 chr11 63263597 63263747 -85519725 + L1MB1 LINE L1 6019 6168 0 1182 191 14 5 chr11 63263753 63263968 -85519504 + AluJo SINE Alu 1 217 -95 451 38 0 0 chr11 63263969 63264022 -85519450 + AluSg/x SINE Alu 82 134 -175 2301 73 38 0 chr11 63264022 63264309 -85519163 + AluSq SINE Alu 1 298 -15 21 0 0 0 chr11 63264309 63264330 -85519142 + AT_rich Low_complexity Low_complexity 1 21 0 2231 96 34 0 chr11 63264941 63265233 -85518239 - AluSp SINE Alu -11 302 1 393 164 0 0 chr11 63265528 63265601 -85517871 + CT-rich Low_complexity Low_complexity 2 74 0 256 239 0 14 chr11 63265628 63265699 -85517773 + CT-rich Low_complexity Low_complexity 2 71 0 612 90 0 33 chr11 63265726 63265848 -85517624 + (TCC)n Simple_repeat Simple_repeat 2 119 0 460 131 103 28 chr11 63266364 63266471 -85517001 - ORSL DNA AcHobo -20 255 141 32 0 0 0 chr11 63266518 63266550 -85516922 + AT_rich Low_complexity Low_complexity 1 32 0 221 227 33 120 chr11 63266946 63267096 -85516376 - MIR3 SINE MIR -7 201 65 324 70 0 0 chr11 63267195 63267238 -85516234 + (TCC)n Simple_repeat Simple_repeat 2 44 0 485 287 24 12 chr11 63268731 63268898 -85514574 + MIR3 SINE MIR 18 186 -22 358 280 31 45 chr11 63269394 63269646 -85513826 - MLT1I LTR MaLR -123 286 72 533 185 11 0 chr11 63269956 63270048 -85513424 - Tigger7 DNA MER2_type -1 2486 2394 * 925 163 58 17 chr11 63270047 63270219 -85513253 - Tigger7 DNA MER2_type -472 261 83 468 152 0 0 chr11 63270492 63270558 -85512914 + AluS SINE Alu 3 68 -245 421 100 0 0 chr11 63270571 63270631 -85512841 - Alu SINE Alu -256 62 3 323 262 177 0 chr11 63270642 63270754 -85512718 - MIR SINE MIR -63 145 14 1492 88 18 18 chr11 63270861 63271087 -85512385 + AluSq SINE Alu 1 226 -87 287 153 0 146 chr11 63271101 63271245 -85512227 + FRAM SINE Alu 40 162 -4 1529 152 83 7 chr11 63271348 63271624 -85511848 - AluSx SINE Alu -15 297 1 2083 116 3 3 chr11 63271861 63272164 -85511308 - AluSg SINE Alu -7 303 1 2084 97 0 3 chr11 63272194 63272482 -85510990 - AluSx SINE Alu -14 298 12 902 192 133 107 chr11 63272501 63272923 -85510549 + L1M4 LINE L1 3726 4158 -1988 1918 124 7 0 chr11 63272925 63273055 -85510417 + AluSq SINE Alu 1 129 -182 207 0 0 0 chr11 63273055 63273078 -85510394 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 1918 124 7 0 chr11 63273078 63273256 -85510216 + AluSq SINE Alu 129 311 0 1298 203 48 76 chr11 63273271 63273464 -85510008 + L1M4 LINE L1 4412 4609 -1537 2032 99 7 3 chr11 63273464 63273756 -85509716 - AluSq SINE Alu -14 299 7 1298 203 48 76 chr11 63273756 63273847 -85509625 + L1M4 LINE L1 4609 4701 -1445 2438 61 0 0 chr11 63273847 63274142 -85509330 + AluY SINE Alu 1 295 -16 1298 203 48 76 chr11 63274142 63274290 -85509182 + L1M4 LINE L1 4701 4833 -1313 1963 141 0 3 chr11 63274325 63274624 -85508848 + AluSx SINE Alu 1 298 -14 1946 120 3 0 chr11 63274625 63274949 -85508523 + AluSq SINE Alu 2 326 0 882 241 68 5 chr11 63275056 63275276 -85508196 + MIR SINE MIR 29 262 0 1002 184 19 10 chr11 63275404 63275610 -85507862 + AluJo SINE Alu 11 218 -94 400 207 7 117 chr11 63275610 63275755 -85507717 + AluSq SINE Alu 84 212 -101 2273 74 10 0 chr11 63276359 63276656 -85506816 - AluSc SINE Alu -9 300 1 1394 225 56 72 chr11 63276777 63277275 -85506197 + LTR33A LTR ERVL 4 493 -30 1574 126 17 33 chr11 63277280 63277582 -85505890 + AluSx SINE Alu 1 297 -15 756 130 0 49 chr11 63277702 63277748 -85505724 + FLAM_C SINE Alu 2 49 -263 2477 107 28 6 chr11 63277748 63278104 -85505368 - THE1B LTR MaLR 0 364 1 756 130 0 49 chr11 63278104 63278180 -85505292 + FLAM_C SINE Alu 49 118 -194 1953 109 29 0 chr11 63278529 63278827 -85504645 - AluSx SINE Alu 0 306 1 2739 156 113 78 chr11 63278914 63279312 -85504160 + L1MB1 LINE L1 5491 5874 -294 1509 168 3 21 chr11 63279312 63279598 -85503874 + AluJo SINE Alu 12 292 -20 2739 156 113 78 chr11 63279598 63279699 -85503773 + L1MB1 LINE L1 5874 5970 -198 2479 48 0 0 chr11 63279699 63279994 -85503478 - AluY SINE Alu -16 295 1 2048 124 0 3 chr11 63279997 63280295 -85503177 - AluSx SINE Alu -15 297 1 2739 156 113 78 chr11 63280295 63280445 -85503027 + L1MB1 LINE L1 5971 6168 0 1079 191 14 5 chr11 63280451 63280666 -85502806 + AluJo SINE Alu 1 217 -95 452 38 0 0 chr11 63280667 63280720 -85502752 + AluSg/x SINE Alu 82 134 -175 2163 73 38 0 chr11 63280720 63281007 -85502465 + AluSq SINE Alu 1 298 -15 21 0 0 0 chr11 63281007 63281028 -85502444 + AT_rich Low_complexity Low_complexity 1 21 0 2118 92 34 0 chr11 63281639 63281931 -85501541 - AluSp SINE Alu -11 302 1 393 164 0 0 chr11 63282226 63282299 -85501173 + CT-rich Low_complexity Low_complexity 2 74 0 256 239 0 14 chr11 63282326 63282397 -85501075 + CT-rich Low_complexity Low_complexity 2 71 0 591 98 0 33 chr11 63282424 63282546 -85500926 + (TCC)n Simple_repeat Simple_repeat 2 119 0 566 214 77 48 chr11 63283061 63283309 -85500163 - ORSL DNA AcHobo -20 255 1 289 307 126 0 chr11 63283452 63283579 -85499893 + MIR SINE MIR 78 220 -42 180 234 0 0 chr11 63283867 63283914 -85499558 + T-rich Low_complexity Low_complexity 2 48 0 416 252 56 0 chr11 63284558 63284665 -85498807 + L2 LINE L2 3201 3313 0 461 218 184 0 chr11 63285188 63285335 -85498137 + MIR SINE MIR 21 194 -68 332 237 151 11 chr11 63285525 63285618 -85497854 - L2 LINE L2 -29 3243 3138 196 262 66 0 chr11 63285730 63285791 -85497681 + MIR SINE MIR 89 153 -109 1150 149 12 66 chr11 63285949 63285990 -85497482 + AluJo SINE Alu 54 96 -216 1955 107 4 4 chr11 63285990 63286271 -85497201 + AluSq SINE Alu 1 281 -32 189 0 0 0 chr11 63286271 63286292 -85497180 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 1150 149 12 66 chr11 63286292 63286491 -85496981 + AluJo SINE Alu 94 282 -30 192 40 0 0 chr11 63286495 63286520 -85496952 + (GAAA)n Simple_repeat Simple_repeat 1 25 0 1820 140 10 10 chr11 63286538 63286831 -85496641 + AluSx SINE Alu 7 299 -13 2365 79 0 0 chr11 63286904 63287207 -85496265 + AluY SINE Alu 1 303 -8 1953 130 0 7 chr11 63287331 63287624 -85495848 - AluSx SINE Alu -21 291 1 59 0 0 0 chr11 63287634 63287693 -85495779 + AT_rich Low_complexity Low_complexity 1 59 0 1945 135 0 0 chr11 63287759 63288055 -85495417 + AluSq SINE Alu 1 296 -17 2340 71 3 0 chr11 63288079 63288373 -85495099 + AluSp SINE Alu 1 295 -18 2332 74 3 7 chr11 63288512 63288821 -85494651 - AluY SINE Alu -3 308 1 436 197 26 0 chr11 63288840 63288916 -85494556 + MER2 DNA MER2_type 268 345 0 1063 211 147 34 chr11 63288922 63289249 -85494223 + MLT1E LTR MaLR 207 570 -23 274 210 168 25 chr11 63289249 63289368 -85494104 - L1M4 LINE L1 -1318 4828 4693 1088 214 0 0 chr11 63289400 63289606 -85493866 + AluJo SINE Alu 6 211 -101 552 30 0 0 chr11 63289616 63289682 -85493790 + (GA)n Simple_repeat Simple_repeat 1 66 0 2341 216 36 63 chr11 63289694 63289942 -85493530 - L1M4 LINE L1 -1538 4608 4355 1398 139 155 4 chr11 63289942 63290193 -85493279 + AluSx SINE Alu 1 289 -23 2341 216 36 63 chr11 63290193 63290450 -85493022 - L1M4 LINE L1 -1791 4355 4093 324 0 0 0 chr11 63290450 63290486 -85492986 + (TG)n Simple_repeat Simple_repeat 2 37 0 2056 107 18 0 chr11 63290486 63290766 -85492706 - AluSx SINE Alu -27 285 1 1590 134 16 4 chr11 63290767 63291021 -85492451 - AluSx SINE Alu -21 291 35 2341 216 36 63 chr11 63291021 63291211 -85492261 - L1M4 LINE L1 -2051 4095 3928 270 219 0 0 chr11 63291247 63291311 -85492161 + (TATG)n Simple_repeat Simple_repeat 4 67 0 1775 132 0 66 chr11 63291315 63291633 -85491839 - AluJo SINE Alu -15 297 1 1750 87 24 4 chr11 63291721 63291974 -85491498 - AluY SINE Alu -13 298 41 1204 133 0 25 chr11 63291992 63292188 -85491284 - AluSx SINE Alu -121 191 1 2801 225 115 64 chr11 63292189 63292758 -85490714 - L1M4 LINE L1 -2300 3846 3307 1482 156 23 76 chr11 63292758 63293060 -85490412 + AluJo SINE Alu 12 297 -15 2801 225 115 64 chr11 63293060 63293271 -85490201 - L1M4 LINE L1 -2839 3307 3108 2279 101 0 0 chr11 63293271 63293579 -85489893 + AluSc SINE Alu 1 308 -1 2801 225 115 64 chr11 63293579 63293842 -85489630 - L1M4 LINE L1 -3038 3108 2860 2056 131 3 0 chr11 63293842 63294147 -85489325 + AluSx SINE Alu 1 306 -6 2801 225 115 64 chr11 63294147 63294398 -85489074 - L1M4 LINE L1 -3286 2860 2623 1391 122 28 125 chr11 63294398 63294718 -85488754 - AluJo SINE Alu -23 289 1 2801 225 115 64 chr11 63294718 63294944 -85488528 - L1M4 LINE L1 -3523 2623 2246 2140 103 7 0 chr11 63294956 63295257 -85488215 + AluSx SINE Alu 1 303 -9 790 190 57 25 chr11 63295259 63295417 -85488055 + AluJb SINE Alu 124 286 -26 1255 168 0 9 chr11 63295461 63295675 -85487797 + AluJo SINE Alu 1 212 -100 2259 107 0 0 chr11 63295807 63296115 -85487357 - AluSx SINE Alu -4 308 1 897 138 0 0 chr11 63296121 63296251 -85487221 - FLAM_C SINE Alu -3 130 1 1977 244 91 21 chr11 63296253 63296743 -85486729 + L2 LINE L2 2364 2901 -413 1819 143 0 0 chr11 63296743 63297015 -85486457 - AluSx SINE Alu -38 274 3 1977 244 91 21 chr11 63297015 63297098 -85486374 + L2 LINE L2 2901 2977 -337 2282 71 0 17 chr11 63297171 63297468 -85486004 + AluSc SINE Alu 1 292 -17 670 182 0 33 chr11 63297648 63297769 -85485703 - AluJb SINE Alu -195 117 1 278 258 0 15 chr11 63297785 63297851 -85485621 + L2 LINE L2 3249 3313 0 2281 75 3 3 chr11 63297896 63298190 -85485282 + AluSp SINE Alu 1 294 -19 1616 155 31 24 chr11 63298534 63298825 -85484647 + AluJb SINE Alu 1 293 -19 2297 81 3 0 chr11 63298874 63299170 -85484302 - AluSp SINE Alu -16 297 1 1459 166 55 0 chr11 63299181 63299452 -85484020 - AluJb SINE Alu -26 286 1 271 261 22 33 chr11 63300096 63300188 -85483284 + MLT1F1 LTR MaLR 35 125 -442 1895 138 85 11 chr11 63300222 63300585 -85482887 + L1MC3 LINE L1 7217 7606 -179 188 282 197 8 chr11 63300758 63300829 -85482643 + MIR SINE MIR 98 154 -108 1732 111 65 11 chr11 63300829 63301108 -85482364 + AluSg SINE Alu 1 294 -16 188 282 197 8 chr11 63301108 63301153 -85482319 + MIR SINE MIR 154 236 -26 2340 76 3 0 chr11 63301702 63302004 -85481468 - AluY SINE Alu -8 303 1 353 164 0 0 chr11 63302649 63302704 -85480768 - U6 snRNA snRNA -52 55 1 2071 107 0 31 chr11 63303224 63303542 -85479930 - AluSx SINE Alu -4 308 1 193 236 182 27 chr11 63303849 63303959 -85479513 - L2 LINE L2 -5 3308 3182 268 162 108 54 chr11 63303977 63304051 -85479421 - MIR SINE MIR -93 169 92 582 256 106 14 chr11 63304169 63304376 -85479096 + L2 LINE L2 1854 2079 -1235 1101 189 57 5 chr11 63304376 63304588 -85478884 - L1MB7 LINE L1 -39 6145 5923 22 0 0 0 chr11 63304597 63304619 -85478853 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr11 63304809 63304832 -85478640 + (A)n Simple_repeat Simple_repeat 1 23 0 970 179 22 70 chr11 63305598 63305827 -85477645 + MER20 DNA MER1_type 1 218 -1 1948 139 0 10 chr11 63305841 63306144 -85477328 - AluSx SINE Alu -12 300 1 844 134 8 8 chr11 63306155 63306289 -85477183 + AluSg/x SINE Alu 162 295 -17 509 196 11 0 chr11 63306380 63306472 -85477000 - Tigger7 DNA MER2_type -1 2486 2394 * 925 163 58 17 chr11 63306471 63306643 -85476829 - Tigger7 DNA MER2_type -2226 261 83 438 149 0 15 chr11 63306916 63306983 -85476489 + AluS SINE Alu 3 68 -245 421 100 0 0 chr11 63306996 63307056 -85476416 - Alu SINE Alu -256 62 3 323 262 177 0 chr11 63307067 63307179 -85476293 - MIR SINE MIR -63 145 14 1707 76 18 0 chr11 63307286 63307511 -85475961 + AluSq SINE Alu 1 229 -84 745 144 8 8 chr11 63307515 63307633 -85475839 + AluJb SINE Alu 171 288 -24 1311 171 68 14 chr11 63307746 63308026 -85475446 - AluSx SINE Alu -17 295 1 2074 109 10 7 chr11 63308262 63308566 -85474906 - AluSx SINE Alu -7 305 1 2053 94 52 0 chr11 63308725 63309013 -85474459 + AluSg SINE Alu 1 303 -7 2049 109 3 3 chr11 63309081 63309374 -85474098 - AluSq SINE Alu -20 293 1 651 271 64 11 chr11 63309695 63309883 -85473589 - MLT1J LTR MaLR -313 198 1 1593 162 4 11 chr11 63310230 63310508 -85472964 + AluJo SINE Alu 21 296 -16 277 259 35 0 chr11 63310659 63310744 -85472728 + MER113 DNA MER1_type? 19 106 -415 277 194 48 0 chr11 63310780 63310842 -85472630 + MER113 DNA MER1_type? 42 106 -415 1554 178 21 0 chr11 63310857 63311144 -85472328 + AluJb SINE Alu 1 293 -19 2070 128 3 3 chr11 63311389 63311701 -85471771 - AluSx SINE Alu 0 312 1 2086 110 7 0 chr11 63311721 63312022 -85471450 - AluSp SINE Alu -8 305 3 632 219 16 0 chr11 63312032 63312160 -85471312 - FLAM_C SINE Alu -3 130 1 325 241 105 30 chr11 63312339 63312378 -85471094 + MIR SINE MIR 87 122 -140 1823 135 10 32 chr11 63312378 63312690 -85470782 - AluSx SINE Alu -7 305 1 325 241 105 30 chr11 63312690 63312754 -85470718 + MIR SINE MIR 122 205 -57 192 77 0 0 chr11 63312754 63312780 -85470692 + (TA)n Simple_repeat Simple_repeat 2 27 0 325 241 105 30 chr11 63312780 63312808 -85470664 + MIR SINE MIR 205 229 -33 1599 226 70 26 chr11 63312811 63312872 -85470600 - L1ME LINE L1 -405 5757 5700 731 214 0 0 chr11 63312872 63312998 -85470474 - FLAM_A SINE Alu -7 126 1 1599 226 70 26 chr11 63312998 63313530 -85469942 - L1ME LINE L1 -462 5700 5106 879 29 0 0 chr11 63313580 63313684 -85469788 - L1PA3 LINE L1 -1 6154 6051 1884 126 3 7 chr11 63313684 63313969 -85469503 - AluSx SINE Alu -28 284 1 1330 214 43 0 chr11 63313996 63314277 -85469195 - AluJo SINE Alu -19 293 1 2337 94 0 3 chr11 63315466 63315765 -85467707 + AluSg SINE Alu 1 298 -12 321 252 84 84 chr11 63315958 63316113 -85467359 - HAL1 LINE L1 -19 2488 2334 * 372 286 61 34 chr11 63316108 63316255 -85467217 - HAL1 LINE L1 -1861 646 496 2255 107 3 0 chr11 63316395 63316693 -85466779 - AluSg SINE Alu -11 299 1 428 243 42 151 chr11 63316694 63316873 -85466599 - L1MEc LINE L1 -4679 1717 1520 2272 107 7 0 chr11 63316873 63317172 -85466300 - AluSx SINE Alu -11 301 1 428 243 42 151 chr11 63317172 63317384 -85466088 - L1MEc LINE L1 -4876 1520 1405 2547 54 0 0 chr11 63317384 63317681 -85465791 - AluY SINE Alu -14 297 1 428 243 42 151 chr11 63317681 63317857 -85465615 - L1MEc LINE L1 -4991 1405 1211 2110 106 14 3 chr11 63317879 63318172 -85465300 + AluSq SINE Alu 1 296 -17 1375 146 4 0 chr11 63318173 63318399 -85465073 + AluSx SINE Alu 1 227 -85 1212 178 108 3 chr11 63318401 63318716 -85464756 + L1MEc LINE L1 581 928 -5468 1523 87 0 0 chr11 63318738 63318923 -85464549 + AluSp SINE Alu 114 298 -15 2120 112 0 4 chr11 63318925 63319201 -85464271 + AluSx SINE Alu 1 275 -37 2300 79 0 0 chr11 63319201 63319480 -85463992 + AluY SINE Alu 23 301 -10 3288 161 71 20 chr11 63319486 63320145 -85463327 - L1MC2 LINE L1 -19 6325 5633 2058 140 7 0 chr11 63320149 63320441 -85463031 - AluSx SINE Alu -18 294 1 374 98 0 0 chr11 63320441 63320492 -85462980 - AluSq/x SINE Alu -166 136 86 1119 170 18 31 chr11 63320492 63320715 -85462757 - AluJo SINE Alu -92 220 1 610 255 132 14 chr11 63321854 63322205 -85461267 - L2 LINE L2 -253 3060 2666 503 130 0 13 chr11 63322205 63322282 -85461190 - AluSc SINE Alu -15 294 219 1379 83 0 0 chr11 63322282 63322451 -85461021 - AluSg SINE Alu -141 169 1 341 206 27 0 chr11 63322916 63322989 -85460483 - MLT1C LTR MaLR -390 77 3 319 261 162 20 chr11 63323115 63323368 -85460104 + L1M4 LINE L1 4234 4522 -1624 226 288 55 0 chr11 63323385 63323458 -85460014 - MIR SINE MIR -1 261 185 1533 146 0 25 chr11 63323824 63324064 -85459408 + AluSx SINE Alu 37 270 -42 324 120 0 0 chr11 63324270 63324320 -85459152 + (A)n Simple_repeat Simple_repeat 1 50 0 454 300 79 16 chr11 63327583 63327773 -85455699 - MIR3 SINE MIR -3 205 4 745 167 93 6 chr11 63328423 63328585 -85454887 + MER5A DNA MER1_type 1 176 -13 21 0 0 0 chr11 63329441 63329462 -85454010 + AT_rich Low_complexity Low_complexity 1 21 0 2231 97 6 35 chr11 63331295 63331614 -85451858 + AluSg SINE Alu 1 310 0 1617 156 13 39 chr11 63331678 63331985 -85451487 + AluJb SINE Alu 14 312 0 2197 106 10 0 chr11 63332265 63332558 -85450914 - AluSg SINE Alu -14 296 1 585 154 218 0 chr11 63332601 63332711 -85450761 + AluJb SINE Alu 156 289 -23 1235 174 5 0 chr11 63332736 63332932 -85450540 - AluJo SINE Alu -115 197 1 2315 82 7 3 chr11 63333351 63333645 -85449827 - AluY SINE Alu -16 295 1 1891 138 85 11 chr11 63333888 63334251 -85449221 - L1MC3 LINE L1 -179 7606 7217 264 261 22 33 chr11 63334285 63334377 -85449095 - MLT1C LTR MaLR -442 125 35 1562 166 55 0 chr11 63335021 63335292 -85448180 + AluJb SINE Alu 1 286 -26 2307 79 3 10 chr11 63335303 63335606 -85447866 + AluSp SINE Alu 1 301 -12 2386 67 20 10 chr11 63335823 63336121 -85447351 + AluY SINE Alu 1 301 -10 3300 158 72 20 chr11 63336127 63336784 -85446688 - L1MC2 LINE L1 -19 6325 5635 1867 149 7 10 chr11 63336790 63337085 -85446387 - AluSx SINE Alu -18 294 1 351 118 0 0 chr11 63337085 63337136 -85446336 - AluSq/x SINE Alu -167 136 86 1088 175 18 31 chr11 63337136 63337359 -85446113 - AluJo SINE Alu -92 220 1 625 244 138 20 chr11 63338498 63338849 -85444623 - L2 LINE L2 -253 3060 2666 525 117 0 13 chr11 63338849 63338926 -85444546 - AluSc SINE Alu -15 294 219 1379 83 0 0 chr11 63338926 63339095 -85444377 - AluSg SINE Alu -141 169 1 341 206 27 0 chr11 63339560 63339633 -85443839 - MLT1C LTR MaLR -390 77 3 319 261 162 20 chr11 63339759 63340012 -85443460 + L1M4 LINE L1 4234 4522 -1624 226 288 55 0 chr11 63340029 63340102 -85443370 - MIR SINE MIR -1 261 185 1703 141 0 29 chr11 63340469 63340745 -85442727 + AluSx SINE Alu 39 306 -6 1104 105 0 0 chr11 63340827 63340970 -85442502 + AluSg SINE Alu 1 143 -167 550 210 48 0 chr11 63340980 63341104 -85442368 - MER46C DNA MER2_type -129 209 80 2011 144 0 23 chr11 63341130 63341435 -85442037 - AluSx SINE Alu -14 298 1 2179 99 0 3 chr11 63341441 63341723 -85441749 - AluSx SINE Alu -9 303 23 921 272 95 74 chr11 63341738 63342540 -85440932 - HAL1 LINE L1 -1633 874 56 1055 227 262 31 chr11 63342610 63342780 -85440692 - L2 LINE L2 -33 3280 3150 2346 80 17 0 chr11 63342780 63343069 -85440403 + AluSp SINE Alu 1 294 -19 1055 227 262 31 chr11 63343069 63343582 -85439890 - L2 LINE L2 -163 3150 2442 22 0 0 0 chr11 63343770 63343792 -85439680 + AT_rich Low_complexity Low_complexity 1 22 0 1337 195 37 0 chr11 63343816 63344057 -85439415 + MER58 DNA MER1_type 5 254 -87 1600 132 60 50 chr11 63344082 63344213 -85439259 + AluJo SINE Alu 1 129 -183 2158 133 13 0 chr11 63344213 63344514 -85438958 + AluSx SINE Alu 6 310 -2 1600 132 60 50 chr11 63344514 63344663 -85438809 + AluJo SINE Alu 129 284 -28 300 83 0 0 chr11 63344683 63344731 -85438741 + (TC)n Simple_repeat Simple_repeat 2 49 0 1639 130 52 33 chr11 63344837 63345144 -85438328 - AluSq SINE Alu 0 313 1 1210 94 6 0 chr11 63345173 63345333 -85438139 - AluSg/x SINE Alu -15 295 135 1909 154 3 16 chr11 63345579 63345885 -85437587 + AluJo SINE Alu 1 302 -10 454 300 79 16 chr11 63346638 63346828 -85436644 - MIR3 SINE MIR -3 205 4 745 167 93 6 chr11 63347477 63347639 -85435833 + MER5A DNA MER1_type 1 176 -13 21 0 0 0 chr11 63348495 63348516 -85434956 + AT_rich Low_complexity Low_complexity 1 21 0 2231 97 6 35 chr11 63350349 63350668 -85432804 + AluSg SINE Alu 1 310 0 1617 156 13 39 chr11 63350731 63351038 -85432434 + AluJb SINE Alu 14 312 0 2197 106 10 0 chr11 63351318 63351611 -85431861 - AluSg SINE Alu -14 296 1 585 154 218 0 chr11 63351654 63351764 -85431708 + AluJb SINE Alu 156 289 -23 1235 174 5 0 chr11 63351789 63351985 -85431487 - AluJo SINE Alu -115 197 1 2530 44 7 0 chr11 63352406 63352699 -85430773 - AluY SINE Alu -16 295 1 1927 141 10 10 chr11 63352773 63353064 -85430408 - AluSx SINE Alu -15 297 7 1240 149 12 66 chr11 63353081 63353309 -85430163 - AluJo SINE Alu 0 311 72 189 0 0 0 chr11 63353309 63353330 -85430142 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 2043 106 3 7 chr11 63353330 63353612 -85429860 - AluSq SINE Alu -32 281 1 1240 149 12 66 chr11 63353612 63353653 -85429819 - AluJo SINE Alu -237 74 54 298 237 151 11 chr11 63353984 63354077 -85429395 + L2 LINE L2 3138 3243 -29 410 222 130 0 chr11 63354306 63354414 -85429058 - MIR SINE MIR -120 142 21 480 213 92 18 chr11 63354937 63355101 -85428371 - L2 LINE L2 0 3313 3138 180 0 0 0 chr11 63355112 63355132 -85428340 + (T)n Simple_repeat Simple_repeat 1 20 0 2347 97 7 0 chr11 63355429 63355738 -85427734 + AluSx SINE Alu 1 311 -1 1631 156 13 39 chr11 63355801 63356108 -85427364 + AluJb SINE Alu 14 312 0 2197 106 10 0 chr11 63356388 63356681 -85426791 - AluSg SINE Alu -14 296 1 585 154 218 0 chr11 63356724 63356834 -85426638 + AluJb SINE Alu 156 289 -23 1235 174 5 0 chr11 63356859 63357055 -85426417 - AluJo SINE Alu -115 197 1 2436 53 7 23 chr11 63357476 63357776 -85425696 - AluY SINE Alu -16 295 1 1835 118 15 7 chr11 63357793 63358065 -85425407 - AluSx SINE Alu -18 294 21 878 120 0 0 chr11 63358065 63358182 -85425290 - AluSq/x SINE Alu -172 141 25 1992 108 10 20 chr11 63358197 63358494 -85424978 - AluSx SINE Alu -18 294 1 7341 135 23 60 chr11 63358502 63359720 -85423752 - L1MCa LINE L1 -5023 1403 141 294 29 0 0 chr11 63359720 63359755 -85423717 + (TCCCC)n Simple_repeat Simple_repeat 1 35 0 1974 132 0 0 chr11 63359757 63360029 -85423443 - AluSx SINE Alu -40 272 1 7341 135 23 60 chr11 63360029 63360238 -85423234 - L1MCa LINE L1 -6286 140 26 904 83 0 0 chr11 63360475 63360635 -85422837 - AluSg/x SINE Alu 0 334 175 1416 226 3 10 chr11 63360637 63360934 -85422538 - AluJo SINE Alu -17 295 1 2270 107 0 7 chr11 63361274 63361573 -85421899 + AluSx SINE Alu 1 297 -15 2488 58 3 0 chr11 63361644 63361939 -85421533 + AluY SINE Alu 1 296 -15 28 48 0 0 chr11 63362042 63362084 -85421388 + AT_rich Low_complexity Low_complexity 1 42 0 2078 111 14 0 chr11 63362084 63362372 -85421100 - AluSq SINE Alu -21 292 1 2363 99 0 7 chr11 63362387 63362689 -85420783 - AluSx SINE Alu -12 300 1 389 297 45 12 chr11 63362690 63362897 -85420575 - L1MEd LINE L1 -1236 1254 952 2149 116 7 0 chr11 63362923 63363216 -85420256 - AluSx SINE Alu -17 295 1 249 306 112 0 chr11 63363379 63363477 -85419995 + L2 LINE L2 2263 2371 -943 1295 299 43 20 chr11 63363477 63363915 -85419557 - MLT1K LTR MaLR -5 583 136 476 296 0 0 chr11 63363920 63364045 -85419427 - MLT1K LTR MaLR -262 326 202 462 111 122 11 chr11 63364073 63364163 -85419309 + MER53 DNA DNA 1 100 -89 250 354 15 23 chr11 63364191 63364321 -85419151 - MLT1K LTR MaLR -425 163 35 624 274 139 86 chr11 63364446 63364921 -85418551 + MLT1L LTR MaLR 98 597 -18 201 330 118 33 chr11 63364963 63365293 -85418179 + L2 LINE L2 2366 2723 -591 372 152 0 0 chr11 63365294 63365360 -85418112 + (CA)n Simple_repeat Simple_repeat 2 67 0 2350 62 38 3 chr11 63365404 63365694 -85417778 - AluY SINE Alu -11 300 1 1018 254 106 79 chr11 63366092 63366650 -85416822 + MLT1K LTR MaLR 10 582 -6 2181 110 3 13 chr11 63366651 63366950 -85416522 + AluSx SINE Alu 1 296 -16 746 137 0 48 chr11 63367070 63367117 -85416355 + FLAM_C SINE Alu 2 50 -262 2479 107 28 6 chr11 63367117 63367473 -85415999 - THE1B LTR MaLR 0 364 1 746 137 0 48 chr11 63367473 63367550 -85415922 + FLAM_C SINE Alu 50 119 -193 2199 113 27 0 chr11 63367897 63368197 -85415275 - AluSx SINE Alu -4 308 1 2704 157 41 70 chr11 63368290 63368672 -85414800 + L1MB1 LINE L1 5497 5889 -279 1618 169 7 27 chr11 63368672 63368968 -85414504 + AluJo SINE Alu 1 290 -22 2704 157 41 70 chr11 63368968 63369069 -85414403 + L1MB1 LINE L1 5889 5991 -177 2585 51 0 0 chr11 63369069 63369364 -85414108 - AluY SINE Alu -16 295 1 2183 124 0 3 chr11 63369367 63369666 -85413806 - AluSx SINE Alu -14 298 1 2704 157 41 70 chr11 63369666 63369821 -85413651 + L1MB1 LINE L1 5993 6168 0 1161 191 14 5 chr11 63369822 63370037 -85413435 + AluJo SINE Alu 1 217 -95 454 38 0 0 chr11 63370038 63370091 -85413381 + AluSg/x SINE Alu 82 134 -175 2287 73 38 0 chr11 63370091 63370378 -85413094 + AluSq SINE Alu 1 298 -15 21 0 0 0 chr11 63370378 63370399 -85413073 + AT_rich Low_complexity Low_complexity 1 21 0 2210 96 34 0 chr11 63371010 63371302 -85412170 - AluSp SINE Alu -11 302 1 393 164 0 0 chr11 63371597 63371670 -85411802 + CT-rich Low_complexity Low_complexity 2 74 0 256 239 0 14 chr11 63371697 63371768 -85411704 + CT-rich Low_complexity Low_complexity 2 71 0 647 115 0 8 chr11 63371795 63371917 -85411555 + (TCC)n Simple_repeat Simple_repeat 2 122 0 598 214 77 48 chr11 63372432 63372680 -85410792 - ORSL DNA AcHobo -20 255 1 233 307 126 0 chr11 63372823 63372950 -85410522 + MIR SINE MIR 78 220 -42 269 109 22 0 chr11 63373233 63373279 -85410193 + T-rich Low_complexity Low_complexity 2 48 0 185 306 16 0 chr11 63373768 63373830 -85409642 + L2 LINE L2 3222 3284 -29 1215 117 0 11 chr11 63374751 63374917 -85408555 - AluSq SINE Alu -13 300 135 2148 101 3 20 chr11 63374917 63375214 -85408258 - AluSq SINE Alu -21 292 1 1215 117 0 11 chr11 63375214 63375226 -85408246 - AluSq SINE Alu -178 135 124 2285 99 0 6 chr11 63375308 63375622 -85407850 - AluSx SINE Alu 0 312 1 2421 86 0 3 chr11 63375742 63376045 -85407427 + AluY SINE Alu 1 302 -9 2046 133 0 7 chr11 63376170 63376463 -85407009 - AluSx SINE Alu -21 291 1 59 0 0 0 chr11 63376473 63376532 -85406940 + AT_rich Low_complexity Low_complexity 1 59 0 2388 69 0 13 chr11 63376598 63376901 -85406571 + AluY SINE Alu 1 299 -12 1183 123 0 6 chr11 63376901 63377064 -85406408 + AluSg/x SINE Alu 124 285 -25 25 51 0 0 chr11 63377064 63377103 -85406369 + AT_rich Low_complexity Low_complexity 1 39 0 984 166 0 18 chr11 63377113 63377282 -85406190 + FRAM SINE Alu 1 166 0 619 186 69 7 chr11 63377575 63377720 -85405752 - HsTC2 DNA Tc2 -3 1895 1742 2378 99 0 3 chr11 63377720 63378022 -85405450 + AluSx SINE Alu 1 301 -11 2090 131 3 3 chr11 63378039 63378337 -85405135 + AluSx SINE Alu 1 298 -14 939 158 0 76 chr11 63378358 63378542 -85404930 - AluSg/x SINE Alu -9 301 132 2570 67 0 0 chr11 63378542 63378841 -85404631 - AluY SINE Alu -12 299 1 1776 127 3 20 chr11 63378841 63379141 -85404331 - AluSq SINE Alu -18 295 1 241 314 69 82 chr11 63379283 63379442 -85404030 - MER91A DNA MER1_type -35 161 5 2451 81 0 0 chr11 63379714 63380009 -85403463 - AluY SINE Alu -16 295 1 1116 129 0 0 chr11 63380009 63380156 -85403316 - AluSq/x SINE Alu -166 147 1 1398 182 95 8 chr11 63380156 63380420 -85403052 - AluJb SINE Alu -25 287 1 754 262 49 9 chr11 63382000 63382225 -85401247 + MER20B DNA MER1_type 24 257 -526 2053 133 3 17 chr11 63382414 63382715 -85400757 - AluSq SINE Alu -13 300 4 1000 80 0 29 chr11 63383256 63383393 -85400079 + AluSg SINE Alu 2 134 -176 2401 87 0 3 chr11 63383394 63383705 -85399767 + AluY SINE Alu 1 310 -1 2017 101 8 0 chr11 63383705 63383972 -85399500 + AluSp SINE Alu 32 300 -13 686 181 16 16 chr11 63384554 63384681 -85398791 - FLAM_A SINE Alu -5 128 2 1723 168 11 0 chr11 63385140 63385425 -85398047 - AluJo SINE Alu -24 288 1 337 267 158 24 chr11 63385515 63385680 -85397792 + MIR SINE MIR 20 206 -56 2015 205 32 103 chr11 63386207 63386642 -85396830 + L1MC4 LINE L1 7379 7746 -296 2469 85 0 0 chr11 63386642 63386948 -85396524 + AluY SINE Alu 1 306 -5 2015 205 32 103 chr11 63386948 63387219 -85396253 + L1MC4 LINE L1 7746 8035 -7 2240 108 0 0 chr11 63387345 63387633 -85395839 + AluSx SINE Alu 1 288 -24 520 226 49 43 chr11 63387634 63387798 -85395674 - MER91B DNA MER1_type -25 165 1 426 232 131 12 chr11 63387911 63388079 -85395393 + L2 LINE L2 2952 3139 -174 1776 192 0 0 chr11 63388448 63388745 -85394727 - AluJb SINE Alu -14 298 2 1491 190 67 6 chr11 63388803 63389130 -85394342 + MER7A DNA MER2_type 1 345 -1 213 39 0 0 chr11 63389338 63389364 -85394108 + (A)n Simple_repeat Simple_repeat 1 26 0 1109 189 57 5 chr11 63389370 63389582 -85393890 + L1MB7 LINE L1 5923 6145 -39 416 246 116 25 chr11 63389582 63389781 -85393691 - L2 LINE L2 -1235 2079 1863 235 176 29 59 chr11 63389913 63389981 -85393491 + MIR SINE MIR 104 169 -93 2192 102 0 43 chr11 63390415 63390740 -85392732 + AluSx SINE Alu 1 311 -1 356 164 0 0 chr11 63391252 63391307 -85392165 + U6 snRNA snRNA 1 55 -52 2488 76 3 0 chr11 63391952 63392256 -85391216 + AluY SINE Alu 1 305 -6 641 246 77 36 chr11 63392805 63392850 -85390622 - MIR SINE MIR -26 236 194 2191 100 28 3 chr11 63392850 63393139 -85390333 - AluSx SINE Alu -16 296 1 641 246 77 36 chr11 63393139 63393313 -85390159 - MIR SINE MIR -68 194 8 1797 170 6 25 chr11 63393613 63393931 -85389541 - AluJb SINE Alu 0 312 1 2669 45 0 3 chr11 63393976 63394285 -85389187 - AluY SINE Alu -3 308 1 2118 128 0 3 chr11 63394964 63395261 -85388211 - AluSx SINE Alu -16 296 1 2000 134 0 0 chr11 63395414 63395691 -85387781 + AluSx SINE Alu 1 277 -35 186 259 93 0 chr11 63395751 63395805 -85387667 - L2 LINE L2 -4 3309 3251 1859 119 0 96 chr11 63395881 63396027 -85387445 + AluSx SINE Alu 1 97 -215 2516 74 3 6 chr11 63396027 63396338 -85387134 + AluY SINE Alu 1 310 -1 1859 119 0 96 chr11 63396338 63396534 -85386938 + AluSx SINE Alu 97 310 -2 359 270 7 61 chr11 63397115 63397263 -85386209 - MIR3 SINE MIR -39 169 30 259 180 16 16 chr11 63397378 63397439 -85386033 - L2 LINE L2 -2 3311 3251 244 188 148 10 chr11 63397455 63397556 -85385916 - MIR SINE MIR -26 236 122 189 216 35 69 chr11 63397819 63397935 -85385537 - MER5C DNA MER1_type -24 300 189 2523 69 0 3 chr11 63398348 63398651 -85384821 - AluY SINE Alu -8 303 2 226 236 0 18 chr11 63401332 63401387 -85382085 + (CATA)n Simple_repeat Simple_repeat 3 56 0 2492 74 0 0 chr11 63401909 63402206 -85381266 - AluY SINE Alu -14 297 1 1094 136 0 0 chr11 63402206 63402353 -85381119 - AluSq/x SINE Alu -165 147 1 1365 186 95 8 chr11 63402353 63402617 -85380855 - AluJb SINE Alu -25 287 1 779 255 105 8 chr11 63404197 63404444 -85379028 + MER20B DNA MER1_type 24 294 -489 2053 133 3 17 chr11 63404609 63404910 -85378562 - AluSq SINE Alu -13 300 4 1000 80 0 29 chr11 63405453 63405590 -85377882 + AluSg SINE Alu 2 134 -176 2401 87 0 3 chr11 63405591 63405902 -85377570 + AluY SINE Alu 1 310 -1 2017 101 8 0 chr11 63405902 63406169 -85377303 + AluSp SINE Alu 32 300 -13 686 181 16 16 chr11 63406751 63406878 -85376594 - FLAM_A SINE Alu -5 128 2 1757 165 11 0 chr11 63407337 63407622 -85375850 - AluJo SINE Alu -24 288 1 2303 92 3 3 chr11 63407654 63407947 -85375525 + AluSx SINE Alu 1 293 -19 2072 118 7 7 chr11 63407959 63408256 -85375216 + AluSx SINE Alu 1 297 -15 829 116 0 0 chr11 63408467 63408579 -85374893 - AluSq/x SINE Alu -200 112 1 337 267 158 24 chr11 63408669 63408834 -85374638 + MIR SINE MIR 20 206 -56 2024 208 31 102 chr11 63409361 63409796 -85373676 + L1MC4 LINE L1 7379 7746 -296 2443 92 0 0 chr11 63409796 63410102 -85373370 + AluY SINE Alu 1 306 -5 2024 208 31 102 chr11 63410102 63410373 -85373099 + L1MC4 LINE L1 7746 8035 -7 2209 111 0 0 chr11 63410499 63410787 -85372685 + AluSx SINE Alu 1 288 -24 520 226 49 43 chr11 63410788 63410952 -85372520 - MER91B DNA MER1_type -25 165 1 426 232 131 12 chr11 63411065 63411233 -85372239 + L2 LINE L2 2952 3139 -174 1776 192 0 0 chr11 63411602 63411899 -85371573 - AluJb SINE Alu -14 298 2 1508 176 69 7 chr11 63411957 63412263 -85371209 + MER7A DNA MER2_type 1 323 -23 410 222 130 0 chr11 63412679 63412787 -85370685 + MIR SINE MIR 21 142 -120 298 237 151 11 chr11 63413016 63413109 -85370363 - L2 LINE L2 -29 3243 3138 1241 149 12 66 chr11 63413440 63413481 -85369991 + AluJo SINE Alu 54 96 -215 2078 107 4 4 chr11 63413481 63413762 -85369710 + AluSq SINE Alu 1 281 -32 189 0 0 0 chr11 63413762 63413783 -85369689 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 1241 149 12 66 chr11 63413783 63414011 -85369461 + AluJo SINE Alu 94 311 0 1900 140 10 14 chr11 63414028 63414321 -85369151 + AluSx SINE Alu 7 298 -14 2565 66 0 0 chr11 63414394 63414696 -85368776 + AluY SINE Alu 1 302 -9 2046 133 0 7 chr11 63414822 63415115 -85368357 - AluSx SINE Alu -21 291 1 59 0 0 0 chr11 63415125 63415184 -85368288 + AT_rich Low_complexity Low_complexity 1 59 0 2064 135 0 0 chr11 63415250 63415546 -85367926 + AluSq SINE Alu 1 296 -17 2473 71 3 0 chr11 63415570 63415864 -85367608 + AluSp SINE Alu 1 295 -18 2451 95 0 0 chr11 63416006 63416312 -85367160 - AluSc SINE Alu -3 306 1 1009 129 41 35 chr11 63416427 63416598 -85366874 - AluSg/x SINE Alu -5 307 136 189 0 0 0 chr11 63416599 63416620 -85366852 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2133 116 0 0 chr11 63416620 63416905 -85366567 - AluSq SINE Alu -28 285 1 1616 176 28 7 chr11 63417265 63417555 -85365917 - AluJb SINE Alu -13 299 4 304 324 242 19 chr11 63417897 63418138 -85365334 + L2 LINE L2 2109 2295 -1019 2053 101 3 60 chr11 63418138 63418455 -85365017 + AluSx SINE Alu 1 299 -13 304 324 242 19 chr11 63418455 63418837 -85364635 + L2 LINE L2 2295 2871 -443 1911 161 0 26 chr11 63419406 63419716 -85363756 - AluJb SINE Alu -10 302 1 826 184 0 0 chr11 63419742 63419867 -85363605 - AluSg/x SINE Alu -18 292 168 2316 78 3 3 chr11 63419942 63420238 -85363234 + AluSc SINE Alu 1 296 -13 695 157 0 0 chr11 63420380 63420501 -85362971 - L1MC2 LINE L1 -403 5941 5821 312 264 69 0 chr11 63420547 63420634 -85362838 - MLT1-int LTR MaLR -107 1264 1172 742 201 24 11 chr11 63420635 63420791 -85362681 - MSTB LTR MaLR -80 346 159 1641 168 34 3 chr11 63420798 63421090 -85362382 + AluJo SINE Alu 3 303 -9 2415 93 0 3 chr11 63421434 63421745 -85361727 - AluSg SINE Alu 0 310 1 2612 62 0 0 chr11 63421808 63422116 -85361356 - AluY SINE Alu -3 308 1 1204 189 156 36 chr11 63422166 63422473 -85360999 - MER2 DNA MER2_type 0 344 1 406 148 0 0 chr11 63422541 63422602 -85360870 - U6 snRNA snRNA -43 64 4 2501 69 0 3 chr11 63422672 63422975 -85360497 - AluY SINE Alu -8 303 2 226 236 0 18 chr11 63425660 63425715 -85357757 + (CATA)n Simple_repeat Simple_repeat 3 56 0 1879 141 3 26 chr11 63426237 63426541 -85356931 - AluSp SINE Alu -16 297 1 2348 93 0 3 chr11 63426960 63427261 -85356211 - AluSg SINE Alu -10 300 1 393 296 119 6 chr11 63427261 63427420 -85356052 + L1ME LINE L1 5641 5817 -304 396 278 107 5 chr11 63427715 63427902 -85355570 - L1ME3A LINE L1 -274 5896 5691 2451 69 0 22 chr11 63427904 63428222 -85355250 - AluY SINE Alu 0 311 1 2367 261 95 42 chr11 63428609 63429052 -85354420 + L1ME LINE L1 20 438 -5632 2157 116 3 3 chr11 63429052 63429355 -85354117 + AluSg SINE Alu 1 303 -7 2367 261 95 42 chr11 63429355 63429378 -85354094 + L1ME LINE L1 438 458 -5612 1516 139 167 8 chr11 63429378 63429630 -85353842 + AluJb SINE Alu 1 292 -10 2367 261 95 42 chr11 63429630 63430152 -85353320 + L1ME LINE L1 458 1061 -5009 602 83 0 83 chr11 63430156 63430252 -85353220 + AluJ/FLAM SINE Alu 2 89 -223 1540 259 29 67 chr11 63430265 63430440 -85353032 + L1ME LINE L1 1107 1287 -4974 2274 217 96 39 chr11 63430440 63431012 -85352460 - MER77 LTR ERV1 0 605 1 1540 259 29 67 chr11 63431012 63431078 -85352394 + L1ME LINE L1 1287 1354 -4907 2334 100 3 0 chr11 63431078 63431387 -85352085 + AluSg SINE Alu 1 310 0 1540 259 29 67 chr11 63431387 63431835 -85351637 + L1ME LINE L1 1354 1771 -4490 252 0 0 0 chr11 63431906 63431934 -85351538 + (T)n Simple_repeat Simple_repeat 1 28 0 1929 149 0 34 chr11 63432036 63432358 -85351114 - AluJb SINE Alu -1 311 1 846 190 57 25 chr11 63432402 63432560 -85350912 - AluJb SINE Alu -26 286 124 2299 106 0 0 chr11 63432562 63432865 -85350607 - AluSx SINE Alu -9 303 1 3040 226 116 64 chr11 63432877 63433103 -85350369 + L1ME LINE L1 2180 2393 -3687 1489 122 28 125 chr11 63433103 63433423 -85350049 + AluJo SINE Alu 1 289 -23 3040 226 116 64 chr11 63433423 63433674 -85349798 + L1ME LINE L1 2393 2630 -3450 2108 138 3 0 chr11 63433674 63433978 -85349494 - AluSx SINE Alu -7 305 1 3040 226 116 64 chr11 63433978 63434241 -85349231 + L1ME LINE L1 2630 2878 -3202 2394 101 0 0 chr11 63434241 63434549 -85348923 - AluSc SINE Alu -1 308 1 3040 226 116 64 chr11 63434549 63434760 -85348712 + L1ME LINE L1 2878 3077 -3003 1585 156 23 76 chr11 63434760 63435062 -85348410 - AluJo SINE Alu -15 297 12 3040 226 116 64 chr11 63435062 63435630 -85347842 + L1ME LINE L1 3077 3780 -2300 1269 133 0 25 chr11 63435631 63435827 -85347645 + AluSx SINE Alu 1 191 -121 1840 87 24 4 chr11 63435845 63436098 -85347374 + AluY SINE Alu 41 298 -13 1874 132 0 66 chr11 63436186 63436504 -85346968 + AluJo SINE Alu 1 297 -15 270 219 0 0 chr11 63436508 63436572 -85346900 + (CATA)n Simple_repeat Simple_repeat 4 67 0 680 258 68 0 chr11 63436608 63436798 -85346674 + L1ME LINE L1 3862 4064 -2016 1690 134 16 4 chr11 63436798 63437052 -85346420 + AluSx SINE Alu 35 291 -21 2195 98 20 3 chr11 63437053 63437349 -85346123 + AluSq SINE Alu 1 301 -12 731 181 16 16 chr11 63437932 63438059 -85345413 - FLAM_A SINE Alu -5 128 2 1727 161 11 0 chr11 63438518 63438803 -85344669 - AluJo SINE Alu -24 288 1 388 267 158 24 chr11 63438893 63439058 -85344414 + MIR SINE MIR 20 206 -56 2042 205 32 103 chr11 63439585 63440020 -85343452 + L1MC4 LINE L1 7379 7746 -296 2442 85 0 0 chr11 63440020 63440326 -85343146 + AluY SINE Alu 1 306 -5 2042 205 32 103 chr11 63440326 63440597 -85342875 + L1MC4 LINE L1 7746 8035 -7 2216 108 0 0 chr11 63440723 63441011 -85342461 + AluSx SINE Alu 1 288 -24 571 226 49 43 chr11 63441012 63441176 -85342296 - MER91B DNA MER1_type -25 165 1 474 232 131 12 chr11 63441289 63441457 -85342015 + L2 LINE L2 2952 3139 -174 1762 192 0 0 chr11 63441826 63442123 -85341349 - AluJb SINE Alu -14 298 2 1591 190 67 6 chr11 63442181 63442508 -85340964 + MER7A DNA MER2_type 1 345 -1 234 0 0 0 chr11 63442567 63442593 -85340879 + (T)n Simple_repeat Simple_repeat 1 26 0 647 254 8 55 chr11 63442745 63442812 -85340660 - L1ME LINE L1 -4895 1489 1420 2274 217 96 39 chr11 63442812 63443384 -85340088 + MER77 LTR ERV1 1 605 0 647 254 8 55 chr11 63443384 63443552 -85339920 - L1ME LINE L1 -4964 1420 1265 602 83 0 83 chr11 63443572 63443668 -85339804 - AluJ/FLAM SINE Alu -223 89 2 2353 265 93 40 chr11 63443672 63444194 -85339278 - L1ME LINE L1 -5009 1363 870 1516 139 167 8 chr11 63444194 63444446 -85339026 - AluJb SINE Alu -10 292 1 2353 265 93 40 chr11 63444446 63444469 -85339003 - L1ME LINE L1 -5502 870 850 2188 115 0 7 chr11 63444469 63444774 -85338698 - AluSg SINE Alu -7 303 1 2353 265 93 40 chr11 63444774 63445217 -85338255 - L1ME LINE L1 -5522 850 322 2451 69 0 22 chr11 63445602 63445920 -85337552 + AluY SINE Alu 1 311 0 396 278 107 5 chr11 63445922 63446109 -85337363 + L1ME3A LINE L1 5691 5896 -274 340 296 119 13 chr11 63446404 63446563 -85336909 - L1ME LINE L1 -305 5816 5641 2123 94 7 17 chr11 63446563 63446860 -85336612 + AluSq SINE Alu 1 294 -19 1718 155 31 24 chr11 63446915 63447206 -85336266 - AluJb SINE Alu -19 293 1 2299 85 3 3 chr11 63447550 63447844 -85335628 - AluSp SINE Alu -19 294 1 315 308 69 82 chr11 63447986 63448145 -85335327 - MER91A DNA MER1_type -35 161 5 2299 102 0 0 chr11 63448417 63448711 -85334761 - AluSg SINE Alu -16 294 1 824 167 0 0 chr11 63448744 63448864 -85334608 + FLAM_C SINE Alu 8 127 -16 2256 94 0 10 chr11 63448869 63449178 -85334294 + AluY SINE Alu 3 308 -3 2416 71 3 3 chr11 63449316 63449611 -85333861 - AluSp SINE Alu -18 295 1 2050 135 0 0 chr11 63449635 63449931 -85333541 - AluSq SINE Alu -17 296 1 59 0 0 0 chr11 63449997 63450056 -85333416 + AT_rich Low_complexity Low_complexity 1 59 0 2030 133 0 7 chr11 63450067 63450360 -85333112 + AluSx SINE Alu 1 291 -21 1116 140 16 21 chr11 63450590 63450783 -85332689 + AluJb SINE Alu 116 307 -5 325 280 17 114 chr11 63450784 63450839 -85332633 + L1MC4a LINE L1 5775 5834 -1974 2236 93 14 0 chr11 63450839 63451129 -85332343 + AluSp SINE Alu 1 294 -19 325 280 17 114 chr11 63451129 63451248 -85332224 + L1MC4a LINE L1 5834 5932 -1876 1935 140 0 26 chr11 63451292 63451599 -85331873 - AluJo SINE Alu -13 299 1 2145 123 0 19 chr11 63452323 63452641 -85330831 - AluSx SINE Alu 0 312 1 262 233 70 23 chr11 63453044 63453130 -85330342 - L1MC4a LINE L1 -1643 6165 6076 2414 74 0 0 chr11 63453770 63454067 -85329405 - AluSg1 SINE Alu -12 297 1 1906 131 0 13 chr11 63454306 63454611 -85328861 - AluSq SINE Alu -12 301 1 316 103 21 0 chr11 63454611 63454670 -85328802 - FLAM_A SINE Alu -40 93 53 187 262 66 0 chr11 63454810 63454871 -85328601 - MIR SINE MIR -109 153 89 333 237 151 11 chr11 63454983 63455076 -85328396 + L2 LINE L2 3138 3243 -29 447 222 130 0 chr11 63455305 63455413 -85328059 - MIR SINE MIR -120 142 21 548 207 92 18 chr11 63455936 63456100 -85327372 - L2 LINE L2 0 3313 3138 1474 130 84 21 chr11 63456111 63456396 -85327076 - AluSx SINE Alu -9 303 1 318 262 177 0 chr11 63456503 63456615 -85326857 + MIR SINE MIR 14 145 -63 441 100 0 0 chr11 63456626 63456686 -85326786 + Alu SINE Alu 3 62 -256 493 152 0 0 chr11 63456699 63456765 -85326707 - AluS SINE Alu -245 68 3 936 163 58 17 chr11 63457038 63457210 -85326262 + Tigger7 DNA MER2_type 83 261 -472 528 185 11 0 chr11 63457209 63457301 -85326171 + Tigger7 DNA MER2_type 2394 2486 -1 * 672 175 7 29 chr11 63457392 63457529 -85325943 - AluSg/x SINE Alu -17 293 160 2058 143 0 7 chr11 63457540 63457841 -85325631 + AluSx SINE Alu 1 299 -13 2078 137 0 7 chr11 63457942 63458248 -85325224 - AluSx SINE Alu -8 304 1 1138 99 6 6 chr11 63458277 63458438 -85325034 - AluSg/x SINE Alu -15 295 135 1617 170 10 35 chr11 63458682 63458993 -85324479 + AluJo SINE Alu 1 303 -9 267 250 80 62 chr11 63460723 63460835 -85322637 - MIR SINE MIR -126 136 23 1295 209 124 44 chr11 63461619 63462045 -85321427 - MLT1C LTR MaLR 0 467 6 301 202 50 50 chr11 63462239 63462358 -85321114 + L1M1 LINE L1 5333 5425 -726 * 413 274 65 0 chr11 63462353 63462477 -85320995 + L1ME LINE L1 5559 5690 -431 2481 81 10 3 chr11 63462478 63462788 -85320684 + AluSq SINE Alu 1 312 -1 964 84 8 0 chr11 63463116 63463235 -85320237 - AluY SINE Alu -191 120 1 1035 288 71 24 chr11 63463235 63463783 -85319689 - L1M4 LINE L1 -1083 5063 4490 2317 149 72 0 chr11 63464319 63464695 -85318777 + MER57A LTR ERV1 1 403 0 541 189 38 30 chr11 63465169 63465301 -85318171 + LTR56 LTR ERV1 9 141 -304 7654 129 29 5 chr11 63465384 63467514 -85315958 - L1MA2 LINE L1 -100 6204 4020 2869 209 44 17 chr11 63467506 63468099 -85315373 - L1M1 LINE L1 -6945 620 12 * 64 14 0 0 chr11 63468553 63468624 -85314848 + AT_rich Low_complexity Low_complexity 1 71 0 3082 142 48 50 chr11 63468766 63468912 -85314560 + LTR8A LTR ERV1 1 146 -545 5091 41 0 0 chr11 63468912 63469503 -85313969 + LTR10C LTR ERV1 1 591 0 3082 142 48 50 chr11 63469503 63470012 -85313460 + LTR8A LTR ERV1 146 691 0 335 304 131 47 chr11 63470017 63470208 -85313264 - L2 LINE L2 0 3313 3107 971 71 31 0 chr11 63470228 63470355 -85313117 + MER4E LTR ERV1 636 766 0 4574 108 52 55 chr11 63470398 63470981 -85312491 + MER4E LTR ERV1 1 583 -196 1408 171 3 49 chr11 63470981 63471308 -85312164 - AluSx SINE Alu 0 312 1 4574 108 52 55 chr11 63471308 63471505 -85311967 + MER4E LTR ERV1 583 779 0 1868 170 84 14 chr11 63471863 63472203 -85311269 + MLT1B LTR MaLR 3 371 -19 3764 154 74 41 chr11 63472203 63472957 -85310515 + MER4E LTR ERV1 1 779 0 1868 170 84 14 chr11 63472957 63472975 -85310497 + MLT1B LTR MaLR 371 386 -4 200 248 90 103 chr11 63472984 63473129 -85310343 - MIR3 SINE MIR -59 149 7 4792 131 79 18 chr11 63473133 63473982 -85309490 + MER4D LTR ERV1 1 901 -2 903 212 5 5 chr11 63474157 63474346 -85309126 - MER5A DNA MER1_type 0 189 1 206 179 89 36 chr11 63474572 63474628 -85308844 - MER5A DNA MER1_type -22 167 109 367 238 21 77 chr11 63474662 63474805 -85308667 - MIR SINE MIR -58 150 16 2150 80 23 7 chr11 63474977 63475276 -85308196 + AluSc SINE Alu 1 304 -5 2187 111 0 13 chr11 63477071 63477387 -85306085 - AluSx SINE Alu 0 312 1 597 202 71 54 chr11 63478563 63478731 -85304741 - MIR SINE MIR -4 258 88 357 250 179 26 chr11 63478938 63479094 -85304378 + MIR SINE MIR 77 256 -6 241 321 18 27 chr11 63479562 63479674 -85303798 + MER5A DNA MER1_type 37 147 -42 345 270 93 62 chr11 63480704 63480930 -85302542 - L2 LINE L2 -1 3271 3039 345 231 73 0 chr11 63481281 63481388 -85302084 - MIR3 SINE MIR -54 154 42 582 231 123 15 chr11 63481740 63481856 -85301616 + MIR SINE MIR 31 133 -129 2326 74 0 0 chr11 63481856 63482152 -85301320 + AluSg SINE Alu 1 296 -14 582 231 123 15 chr11 63482152 63482238 -85301234 + MIR SINE MIR 133 255 -7 474 287 21 7 chr11 63482418 63482561 -85300911 + MIR SINE MIR 27 171 -91 313 221 123 33 chr11 63482790 63482912 -85300560 - Charlie8 DNA MER1_type -2236 181 49 2151 81 0 3 chr11 63483637 63483952 -85299520 + AluSc SINE Alu 1 314 0 235 201 201 79 chr11 63484001 63484140 -85299332 + MIR SINE MIR 32 187 -75 198 309 55 45 chr11 63484149 63484259 -85299213 - MIR SINE MIR -6 256 146 922 190 85 65 chr11 63484272 63484519 -85298953 - MIR SINE MIR -5 257 6 277 276 0 0 chr11 63484520 63484578 -85298894 + MIR SINE MIR 201 258 -4 199 226 210 0 chr11 63484588 63484650 -85298822 - MIR SINE MIR -106 156 82 341 204 58 58 chr11 63485230 63485333 -85298139 - MER5B DNA MER1_type -56 122 20 199 224 179 15 chr11 63485273 63485340 -85298132 + MER5A DNA MER1_type 111 188 -1 * 230 289 40 0 chr11 63485362 63485438 -85298034 - MIR SINE MIR -69 139 61 349 196 59 139 chr11 63486341 63486558 -85296914 - MLT1J LTR MaLR -284 188 6 627 179 86 14 chr11 63486562 63486702 -85296770 - MIR SINE MIR -98 164 15 225 153 28 42 chr11 63486875 63486947 -85296525 + (TA)n Simple_repeat Simple_repeat 2 72 0 1045 112 0 31 chr11 63486948 63487109 -85296363 + MLT1A1 LTR MaLR 1 156 -209 2079 102 0 0 chr11 63487109 63487393 -85296079 + AluSx SINE Alu 1 284 -28 1064 200 10 5 chr11 63487419 63487614 -85295858 + MLT1A1 LTR MaLR 142 337 -28 5639 129 47 20 chr11 63487615 63488337 -85295135 + L1PA16 LINE L1 4951 5706 -460 2323 59 3 26 chr11 63488337 63488640 -85294832 - AluY SINE Alu -15 296 1 5639 129 47 20 chr11 63488640 63489105 -85294367 + L1PA16 LINE L1 5706 6157 -9 364 255 51 57 chr11 63489129 63489286 -85294186 - L1M4 LINE L1 -1515 4631 4476 1235 94 88 0 chr11 63489594 63489764 -85293708 + THE1B LTR MaLR 1 185 -179 943 106 40 141 chr11 63490250 63490448 -85293024 + THE1B LTR MaLR 178 364 0 564 251 98 127 chr11 63490774 63490958 -85292514 - L1M4 LINE L1 -1712 4434 4246 1898 144 0 3 chr11 63490958 63491257 -85292215 + AluSx SINE Alu 3 300 -12 564 251 98 127 chr11 63491257 63491837 -85291635 - L1M4 LINE L1 -1900 4246 3692 666 228 97 18 chr11 63491905 63492133 -85291339 - L1MC5 LINE L1 -424 7537 7292 1867 139 7 3 chr11 63492200 63492488 -85290984 - AluSx SINE Alu -23 289 1 274 169 39 26 chr11 63492489 63492566 -85290906 - HAL1 LINE L1 -1463 1044 967 1945 178 68 23 chr11 63492567 63492961 -85290511 + LTR3 LTR ERVK 5 416 -16 743 211 9 83 chr11 63493023 63493170 -85290302 - HAL1 LINE L1 -1532 975 849 2103 127 0 0 chr11 63493170 63493478 -85289994 - AluSx SINE Alu -4 308 1 743 211 9 83 chr11 63493478 63493558 -85289914 - HAL1 LINE L1 -1658 849 765 1135 135 16 11 chr11 63493598 63493783 -85289689 - MER61E LTR ERV1 -43 526 341 15621 27 0 24 chr11 63494063 63496676 -85286796 + L1PA4 LINE L1 3557 6152 -3 937 120 82 0 chr11 63496687 63496845 -85286627 + AluSg/x SINE Alu 127 297 -13 1297 151 0 14 chr11 63496845 63497063 -85286409 + MER4C LTR ERV1 251 465 0 259 118 0 0 chr11 63497129 63497163 -85286309 + Alu SINE Alu 1 34 -268 2315 190 43 47 chr11 63497201 63497314 -85286158 + MER21B LTR ERV1 365 477 -386 8177 47 1 0 chr11 63497314 63498282 -85285190 - LTR5 LTR ERVK 0 969 1 2315 190 43 47 chr11 63498282 63498658 -85284814 + MER21B LTR ERV1 477 852 -11 3670 51 0 4 chr11 63498662 63499112 -85284360 - LTR7 LTR ERV1 -2 448 1 378 176 77 104 chr11 63499135 63499437 -85284035 + L1M4 LINE L1 2972 3242 -2904 474 275 131 0 chr11 63499445 63499605 -85283867 - MER58A DNA MER1_type -19 205 25 7974 55 1 0 chr11 63499660 63500625 -85282847 - LTR5 LTR ERVK -3 966 1 1071 206 127 51 chr11 63500630 63501024 -85282448 - MER66A LTR ERV1 -44 591 97 2006 145 113 123 chr11 63501251 63501915 -85281557 + MER4A LTR ERV1 4 660 -4 2578 181 122 32 chr11 63501921 63502513 -85280959 + HERVL68 LTR ERVL 735 1379 -1658 500 344 113 11 chr11 63503065 63503347 -85280125 - MER21B LTR ERV1 -87 776 466 2284 147 55 3 chr11 63503461 63503842 -85279630 - MER31A LTR ERV1 -84 401 1 545 200 30 128 chr11 63503842 63504157 -85279315 - MER21B LTR ERV1 -472 391 13 33 0 0 0 chr11 63504207 63504240 -85279232 + AT_rich Low_complexity Low_complexity 1 33 0 1391 158 8 26 chr11 63504705 63504971 -85278501 - AluJo SINE Alu -9 303 43 277 310 94 23 chr11 63504974 63505145 -85278327 + MLT1L LTR MaLR 194 376 -239 1991 120 7 7 chr11 63505591 63505927 -85277545 + AluSq SINE Alu 1 313 0 295 291 45 0 chr11 63508081 63508191 -85275281 + MIR SINE MIR 61 150 -58 2215 95 3 0 chr11 63509025 63509321 -85274151 + AluSp SINE Alu 1 297 -16 281 278 38 15 chr11 63509742 63509875 -85273597 - LTR37B LTR ERV1 -35 433 298 2086 104 0 26 chr11 63509889 63510197 -85273275 + AluSx SINE Alu 1 300 -12 1830 150 0 0 chr11 63510541 63510835 -85272637 - AluSc SINE Alu -15 294 1 2758 110 32 38 chr11 63510837 63511309 -85272163 + L1PA16 LINE L1 5689 6157 -9 375 248 51 57 chr11 63511336 63511493 -85271979 - L1M4 LINE L1 -1515 4631 4476 1235 94 88 0 chr11 63511801 63511971 -85271501 + THE1B LTR MaLR 1 185 -179 906 107 41 137 chr11 63512456 63512653 -85270819 + THE1B LTR MaLR 178 364 0 564 251 98 127 chr11 63512979 63513163 -85270309 - L1M4 LINE L1 -1712 4434 4246 1898 144 0 3 chr11 63513163 63513462 -85270010 + AluSx SINE Alu 3 300 -12 564 251 98 127 chr11 63513462 63514042 -85269430 - L1M4 LINE L1 -1900 4246 3692 666 228 97 18 chr11 63514110 63514338 -85269134 - L1MC5 LINE L1 -424 7537 7292 183 42 0 0 chr11 63514376 63514400 -85269072 + (TTTAA)n Simple_repeat Simple_repeat 2 25 0 1867 139 7 3 chr11 63514406 63514694 -85268778 - AluSx SINE Alu -23 289 1 274 169 39 26 chr11 63514695 63514772 -85268700 - HAL1 LINE L1 -1463 1044 967 1945 178 68 23 chr11 63514773 63515167 -85268305 + LTR3 LTR ERVK 5 416 -16 743 211 9 83 chr11 63515229 63515376 -85268096 - HAL1 LINE L1 -1532 975 849 2103 127 0 0 chr11 63515376 63515684 -85267788 - AluSx SINE Alu -4 308 1 743 211 9 83 chr11 63515684 63515764 -85267708 - HAL1 LINE L1 -1658 849 765 1135 135 16 11 chr11 63515804 63515989 -85267483 - MER61E LTR ERV1 -43 526 341 15693 27 0 24 chr11 63516269 63518884 -85264588 + L1PA4 LINE L1 3557 6152 -3 937 120 82 0 chr11 63518895 63519053 -85264419 + AluSg/x SINE Alu 129 299 -13 1271 150 0 14 chr11 63519058 63519271 -85264201 + MER4C LTR ERV1 256 465 0 259 118 0 0 chr11 63519337 63519371 -85264101 + Alu SINE Alu 1 34 -269 2309 190 43 47 chr11 63519409 63519522 -85263950 + MER21B LTR ERV1 365 477 -386 8688 41 1 0 chr11 63519522 63520490 -85262982 - LTR5 LTR ERVK 0 969 1 2309 190 43 47 chr11 63520490 63520866 -85262606 + MER21B LTR ERV1 477 852 -11 3667 49 0 4 chr11 63520870 63521320 -85262152 - LTR7 LTR ERV1 -2 448 1 598 172 53 156 chr11 63521343 63521645 -85261827 + L1M4 LINE L1 2972 3242 -2904 470 275 131 0 chr11 63521653 63521813 -85261659 - MER58A DNA MER1_type -19 205 25 8364 55 1 0 chr11 63521868 63522833 -85260639 - LTR5 LTR ERVK -3 966 1 1062 203 137 43 chr11 63522843 63523232 -85260240 - MER66A LTR ERV1 -53 476 97 2023 146 113 125 chr11 63523459 63524124 -85259348 + MER4A LTR ERV1 4 660 -4 2636 181 122 29 chr11 63524130 63524720 -85258752 + HERVL68 LTR ERVL 735 1379 -1658 1964 149 0 31 chr11 63525123 63525444 -85258028 - AluJb SINE Alu -1 311 1 754 189 57 31 chr11 63525488 63525647 -85257825 - AluJb SINE Alu -26 286 124 2315 106 0 0 chr11 63525649 63525952 -85257520 - AluSx SINE Alu -9 303 1 2908 226 116 64 chr11 63525964 63526190 -85257282 + L1M4 LINE L1 2246 2459 -3687 1510 122 28 125 chr11 63526190 63526510 -85256962 + AluJo SINE Alu 1 289 -23 2908 226 116 64 chr11 63526510 63526761 -85256711 + L1M4 LINE L1 2459 2696 -3450 2120 138 3 0 chr11 63526761 63527065 -85256407 - AluSx SINE Alu -7 305 1 2908 226 116 64 chr11 63527065 63527328 -85256144 + L1M4 LINE L1 2696 2944 -3202 2408 101 0 0 chr11 63527328 63527636 -85255836 - AluSc SINE Alu -1 308 1 2908 226 116 64 chr11 63527636 63527847 -85255625 + L1M4 LINE L1 2944 3143 -3003 1594 156 23 76 chr11 63527847 63528149 -85255323 - AluJo SINE Alu -15 297 12 2908 226 116 64 chr11 63528149 63528717 -85254755 + L1M4 LINE L1 3143 3846 -2300 1286 133 0 25 chr11 63528718 63528914 -85254558 + AluSx SINE Alu 1 191 -121 1855 87 24 4 chr11 63528932 63529185 -85254287 + AluY SINE Alu 41 298 -13 1895 132 0 66 chr11 63529273 63529591 -85253881 + AluJo SINE Alu 1 297 -15 270 219 0 0 chr11 63529595 63529659 -85253813 + (CATA)n Simple_repeat Simple_repeat 4 67 0 2270 216 37 63 chr11 63529694 63529884 -85253588 + L1M4 LINE L1 3928 4121 -2025 1697 134 16 4 chr11 63529884 63530138 -85253334 + AluSx SINE Alu 35 291 -21 2216 96 18 0 chr11 63530139 63530419 -85253053 + AluSx SINE Alu 1 285 -27 432 0 0 0 chr11 63530419 63530467 -85253005 + (CA)n Simple_repeat Simple_repeat 2 49 0 2270 216 37 63 chr11 63530467 63530722 -85252750 + L1M4 LINE L1 4120 4354 -1792 1400 148 160 4 chr11 63530722 63530972 -85252500 - AluSx SINE Alu -23 289 1 2270 216 37 63 chr11 63530972 63531221 -85252251 + L1M4 LINE L1 4354 4608 -1538 480 35 0 0 chr11 63531233 63531291 -85252181 + (TC)n Simple_repeat Simple_repeat 1 58 0 1166 214 0 0 chr11 63531301 63531507 -85251965 - AluJo SINE Alu -101 211 6 280 210 168 25 chr11 63531539 63531658 -85251814 + L1M4 LINE L1 4693 4828 -1318 1069 214 145 33 chr11 63531658 63531989 -85251483 - MLT1E LTR MaLR -23 570 203 436 197 26 0 chr11 63531993 63532069 -85251403 - MER2 DNA MER2_type 0 345 268 2286 78 17 17 chr11 63532088 63532383 -85251089 + AluSx SINE Alu 1 295 -17 697 226 8 0 chr11 63532384 63532517 -85250955 - MER2 DNA MER2_type -211 134 1 533 212 0 53 chr11 63532543 63532656 -85250816 - MLT1E LTR MaLR -536 118 12 853 182 44 0 chr11 63532656 63532815 -85250657 - FRAM SINE Alu -11 165 1 523 231 81 0 chr11 63532846 63533006 -85250466 + L1M4 LINE L1 4964 5136 -1010 2069 147 0 10 chr11 63533006 63533313 -85250159 + AluSx SINE Alu 1 304 -8 1807 163 34 3 chr11 63534039 63534333 -85249139 + AluJb SINE Alu 1 303 -9 23 78 0 0 chr11 63534689 63534740 -85248732 + AT_rich Low_complexity Low_complexity 1 51 0 255 246 14 14 chr11 63535695 63535764 -85247708 + L2 LINE L2 2182 2250 -1064 2315 100 0 7 chr11 63535964 63536265 -85247207 - AluSx SINE Alu -13 299 1 2609 71 0 0 chr11 63536292 63536602 -85246870 - AluY SINE Alu -1 310 1 1012 135 41 29 chr11 63536717 63536887 -85246585 - AluSg/x SINE Alu -5 307 136 2184 125 0 0 chr11 63536889 63537194 -85246278 - AluSq SINE Alu -8 305 1 1632 172 28 7 chr11 63537551 63537841 -85245631 - AluJb SINE Alu -13 299 4 2033 107 3 60 chr11 63538424 63538741 -85244731 + AluSx SINE Alu 1 299 -13 328 321 194 0 chr11 63538854 63539091 -85244381 + L2 LINE L2 2551 2833 -481 1989 153 0 28 chr11 63539692 63540012 -85243460 - AluJb SINE Alu -1 311 1 811 178 0 0 chr11 63540031 63540160 -85243312 - AluSg/x SINE Alu -11 301 173 2077 114 3 7 chr11 63540238 63540535 -85242937 + AluSc SINE Alu 1 296 -13 692 157 0 0 chr11 63540677 63540798 -85242674 - L1MC2 LINE L1 -403 5941 5821 306 264 69 0 chr11 63540844 63540931 -85242541 - MLT1E-int LTR MaLR -107 1264 1172 751 201 24 11 chr11 63540932 63541088 -85242384 - MSTB LTR MaLR -80 346 159 1652 168 34 3 chr11 63541095 63541387 -85242085 + AluJo SINE Alu 3 303 -9 2420 97 0 3 chr11 63541731 63542042 -85241430 - AluSg SINE Alu 0 310 1 2652 58 0 0 chr11 63542105 63542413 -85241059 - AluY SINE Alu -3 308 1 1106 199 153 33 chr11 63542463 63542770 -85240702 - MER2 DNA MER2_type 0 344 1 406 148 0 0 chr11 63542838 63542899 -85240573 - U6 snRNA snRNA -43 64 4 2562 50 10 0 chr11 63542969 63543268 -85240204 - AluY SINE Alu -8 303 2 255 209 15 179 chr11 63543270 63543404 -85240068 - L1MC2 LINE L1 -2123 5685 5574 23 0 0 0 chr11 63543411 63543434 -85240038 + AT_rich Low_complexity Low_complexity 1 23 0 2382 101 0 0 chr11 63543434 63543730 -85239742 - AluSx SINE Alu -16 296 1 1716 153 33 4 chr11 63544633 63544908 -85238564 + AluJb SINE Alu 1 283 -29 207 0 0 0 chr11 63545209 63545232 -85238240 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1590 152 9 78 chr11 63545595 63545930 -85237542 - AluJo SINE Alu 0 312 1 2101 131 13 19 chr11 63546311 63546625 -85236847 - AluSx SINE Alu 0 312 1 2301 95 3 13 chr11 63546978 63547282 -85236190 + AluSq SINE Alu 1 301 -12 717 152 54 0 chr11 63547778 63547890 -85235582 - FLAM_C SINE Alu -15 118 1 411 239 131 23 chr11 63548347 63548538 -85234934 - MIR SINE MIR -8 254 46 852 154 0 0 chr11 63549624 63549754 -85233718 - FLAM_A SINE Alu -2 131 2 231 321 36 48 chr11 63550167 63550251 -85233221 - MER5A DNA MER1_type -35 154 72 2032 136 0 17 chr11 63550422 63550724 -85232748 + AluSx SINE Alu 1 297 -15 1778 156 6 52 chr11 63550803 63550996 -85232476 - AluJb SINE Alu 0 312 139 2299 92 3 3 chr11 63550996 63551289 -85232183 - AluSp SINE Alu -20 293 1 1778 156 6 52 chr11 63551289 63551422 -85232050 - AluJb SINE Alu -173 139 1 344 237 105 0 chr11 63551738 63551852 -85231620 - MIR SINE MIR -11 251 126 2089 117 7 10 chr11 63551911 63552211 -85231261 - AluSg SINE Alu -11 299 1 2211 114 3 0 chr11 63552240 63552539 -85230933 + AluSp SINE Alu 1 300 -13 1714 166 43 4 chr11 63552760 63553037 -85230435 - AluJo SINE Alu -24 288 1 239 215 15 0 chr11 63553901 63553966 -85229506 + T-rich Low_complexity Low_complexity 2 67 0 1711 176 4 0 chr11 63553966 63554238 -85229234 - AluJb SINE Alu -39 273 1 591 195 24 73 chr11 63554509 63554714 -85228758 + L2 LINE L2 3111 3305 -8 2049 147 0 3 chr11 63554801 63555114 -85228358 + AluSx SINE Alu 1 312 0 25 65 0 0 chr11 63555663 63555709 -85227763 + AT_rich Low_complexity Low_complexity 1 46 0 695 214 8 0 chr11 63555979 63556110 -85227362 + AluJo SINE Alu 5 136 -176 2456 77 0 13 chr11 63556110 63556422 -85227050 + AluY SINE Alu 1 308 -3 2433 93 0 3 chr11 63556485 63556796 -85226676 + AluSg SINE Alu 1 310 0 1652 168 34 3 chr11 63557140 63557432 -85226040 - AluJo SINE Alu -9 303 3 751 201 24 11 chr11 63557439 63557595 -85225877 + MSTB LTR MaLR 159 346 -80 306 264 69 0 chr11 63557596 63557683 -85225789 + MLT1-int LTR MaLR 1172 1264 -107 692 157 0 0 chr11 63557729 63557850 -85225622 + L1MC2 LINE L1 5821 5941 -403 2615 43 0 3 chr11 63557992 63558292 -85225180 - AluY SINE Alu -12 299 1 2110 128 0 3 chr11 63558971 63559267 -85224205 - AluSx SINE Alu -17 295 1 2032 130 0 0 chr11 63559420 63559697 -85223775 + AluSx SINE Alu 1 277 -35 186 259 93 0 chr11 63559757 63559811 -85223661 - L2 LINE L2 -4 3309 3251 1024 144 0 0 chr11 63559887 63560033 -85223439 + AluSq/x SINE Alu 1 146 -166 2478 84 3 0 chr11 63560033 63560341 -85223131 + AluY SINE Alu 1 309 -2 1105 276 47 44 chr11 63560342 63560792 -85222680 + L1MEc LINE L1 1456 1906 -4490 404 216 34 11 chr11 63560951 63561039 -85222433 - AluJo SINE Alu -101 211 122 373 308 105 25 chr11 63561042 63561328 -85222144 - L1MEc LINE L1 -4027 2369 2061 389 239 34 43 chr11 63563315 63563432 -85220040 + L2 LINE L2 3155 3270 -2 342 257 40 14 chr11 63563540 63563754 -85219718 + HAL1 LINE L1 23 326 -2181 913 247 100 49 chr11 63563777 63564146 -85219326 + HAL1 LINE L1 418 805 -1702 1612 169 11 7 chr11 63564216 63564488 -85218984 + AluSx SINE Alu 1 273 -39 2260 96 10 7 chr11 63565042 63565344 -85218128 - AluSq SINE Alu -10 303 1 426 212 80 15 chr11 63565354 63565491 -85217981 + HAL1 LINE L1 820 965 -1542 258 114 0 0 chr11 63565493 63565528 -85217944 + U2 snRNA snRNA 1 35 -153 287 57 0 0 chr11 63565599 63565634 -85217838 + U2 snRNA snRNA 1 35 -153 234 265 0 0 chr11 63565805 63565873 -85217599 + A-rich Low_complexity Low_complexity 1 68 0 2271 110 3 3 chr11 63565876 63566184 -85217288 + AluSx SINE Alu 1 308 -4 1942 207 30 55 chr11 63566191 63566375 -85217097 + HAL1 LINE L1 1348 1535 -972 7759 25 2 1 chr11 63566375 63567761 -85215711 + L1PA4 LINE L1 4767 6155 0 1942 207 30 55 chr11 63567761 63568103 -85215369 + HAL1 LINE L1 1535 1861 -646 1763 211 53 70 chr11 63568103 63568250 -85215222 + MLT1D LTR MaLR 3 151 -354 2444 85 7 0 chr11 63568250 63568557 -85214915 + AluSg SINE Alu 1 309 -1 1763 211 53 70 chr11 63568557 63568719 -85214753 + MLT1D LTR MaLR 151 314 -191 4599 164 66 47 chr11 63568719 63569770 -85213702 + MER11C LTR ERVK 1 1071 0 1763 211 53 70 chr11 63569770 63569971 -85213501 + MLT1D LTR MaLR 314 505 0 626 277 59 68 chr11 63570066 63570506 -85212966 + HAL1 LINE L1 1685 2120 -387 2149 99 4 0 chr11 63570727 63571017 -85212455 + AluSg SINE Alu 1 275 -35 24 53 0 0 chr11 63571962 63572000 -85211472 + AT_rich Low_complexity Low_complexity 1 38 0 2384 59 3 34 chr11 63572375 63572696 -85210776 - AluY SINE Alu 0 311 1 2993 106 35 22 chr11 63572698 63573161 -85210311 + L1PA16 LINE L1 5689 6157 -9 364 255 51 57 chr11 63573185 63573342 -85210130 - L1M4 LINE L1 -1515 4631 4476 1165 111 89 2 chr11 63573650 63573844 -85209628 + THE1B LTR MaLR 1 209 -146 2276 61 19 22 chr11 63574116 63574427 -85209045 - AluY SINE Alu -1 310 1 2192 81 10 7 chr11 63574644 63574940 -85208532 - AluSc SINE Alu -12 297 1 1148 178 43 0 chr11 63574998 63575206 -85208266 + MER20 DNA MER1_type 1 217 -2 1075 186 0 0 chr11 63575552 63575729 -85207743 + AluJo SINE Alu 1 177 -135 258 105 0 0 chr11 63575729 63575767 -85207705 + (TG)n Simple_repeat Simple_repeat 2 39 0 2144 92 0 0 chr11 63575767 63576051 -85207421 - AluSx SINE Alu -28 284 1 1592 189 164 18 chr11 63576402 63576419 -85207053 + HAL1 LINE L1 1160 1173 -1334 1781 180 0 0 chr11 63576419 63576730 -85206742 + AluSx SINE Alu 1 311 -1 1592 189 164 18 chr11 63576730 63577146 -85206326 + HAL1 LINE L1 1173 1656 -851 1087 133 0 17 chr11 63577157 63577338 -85206134 - AluSg/x SINE Alu 0 312 135 595 324 0 0 chr11 63577352 63577525 -85205947 + HAL1 LINE L1 1674 1846 -661 757 179 0 15 chr11 63577549 63577683 -85205789 + FLAM_C SINE Alu 1 132 -1 2129 110 0 0 chr11 63577697 63577987 -85205485 - AluSx SINE Alu -22 290 1 189 0 0 0 chr11 63578595 63578616 -85204856 + (A)n Simple_repeat Simple_repeat 1 21 0 446 286 111 29 chr11 63578705 63578876 -85204596 - MIR SINE MIR -70 192 8 276 300 0 36 chr11 63579027 63579137 -85204335 + A-rich Low_complexity Low_complexity 3 108 0 225 230 184 11 chr11 63579340 63579427 -85204045 + MIR SINE MIR 82 183 -79 192 313 30 30 chr11 63580123 63580222 -85203250 + MIR3 SINE MIR 81 179 -29 1908 164 0 0 chr11 63580718 63581022 -85202450 + AluJb SINE Alu 1 304 -8 559 207 83 0 chr11 63581471 63581592 -85201880 + MER96 DNA MER1_type? 1 131 -44 242 310 35 0 chr11 63581627 63581714 -85201758 + MIR SINE MIR 26 115 -93 1975 135 0 29 chr11 63581782 63582094 -85201378 - AluSx SINE Alu -9 303 1 846 286 39 0 chr11 63582214 63582445 -85201027 + MIR SINE MIR 2 241 -21 1333 299 190 50 chr11 63582705 63583188 -85200284 - L2 LINE L2 -22 3291 2877 1775 136 3 39 chr11 63583188 63583498 -85199974 - AluSx SINE Alu -13 299 1 1333 299 190 50 chr11 63583498 63584535 -85198937 - L2 LINE L2 -436 2877 1542 558 229 112 19 chr11 63584595 63584627 -85198845 + L1ME1 LINE L1 5658 5686 -476 2276 95 0 0 chr11 63584627 63584931 -85198541 + AluSx SINE Alu 1 304 -8 558 229 112 19 chr11 63584931 63585103 -85198369 + L1ME1 LINE L1 5686 5881 -281 225 0 0 0 chr11 63585236 63585261 -85198211 + (A)n Simple_repeat Simple_repeat 1 25 0 3890 91 23 15 chr11 63585350 63585638 -85197834 - MER1A DNA MER1_type -2173 529 245 1829 138 58 64 chr11 63585638 63585812 -85197660 + THE1C LTR MaLR 1 174 -201 1971 140 0 0 chr11 63585812 63586105 -85197367 + AluSq SINE Alu 3 295 -18 1829 138 58 64 chr11 63586105 63586239 -85197233 + THE1C LTR MaLR 174 309 -66 2382 69 0 7 chr11 63586239 63586542 -85196930 + AluY SINE Alu 1 301 -10 1829 138 58 64 chr11 63586542 63586609 -85196863 + THE1C LTR MaLR 309 375 0 3890 91 23 15 chr11 63586609 63586845 -85196627 - MER1A DNA MER1_type -2457 245 1 562 294 85 15 chr11 63587444 63587645 -85195827 - MIR SINE MIR -13 249 35 212 286 0 0 chr11 63587851 63587921 -85195551 + (TG)n Simple_repeat Simple_repeat 1 70 0 1749 160 3 10 chr11 63588979 63589279 -85194193 - AluJb SINE Alu -14 298 1 25 0 0 0 chr11 63589318 63589343 -85194129 + AT_rich Low_complexity Low_complexity 1 25 0 680 211 74 6 chr11 63589383 63589558 -85193914 + L1ME1 LINE L1 5872 6058 -108 2194 74 0 3 chr11 63589575 63589900 -85193572 - AluSx SINE Alu 0 324 1 33 43 0 0 chr11 63589993 63590040 -85193432 + AT_rich Low_complexity Low_complexity 1 47 0 1874 92 0 0 chr11 63590052 63590303 -85193169 - AluY SINE Alu -14 297 47 40 0 0 0 chr11 63590325 63590365 -85193107 + AT_rich Low_complexity Low_complexity 1 40 0 2088 113 0 13 chr11 63590689 63591000 -85192472 + AluSq SINE Alu 1 307 -6 2082 99 14 7 chr11 63591003 63591296 -85192176 + AluSx SINE Alu 1 295 -17 1536 181 23 64 chr11 63591508 63591807 -85191665 + MER58B DNA MER1_type 12 297 -2123 2081 112 3 3 chr11 63591807 63592112 -85191360 + AluSx SINE Alu 1 305 -7 1536 181 23 64 chr11 63592112 63592155 -85191317 + MER58B DNA MER1_type 297 340 -1 1059 110 13 7 chr11 63592488 63592643 -85190829 + L1PA11 LINE L1 6019 6174 0 246 32 0 0 chr11 63592700 63592731 -85190741 + (CA)n Simple_repeat Simple_repeat 2 32 0 1845 124 0 0 chr11 63592842 63593099 -85190373 + AluSx SINE Alu 1 257 -55 2005 123 7 0 chr11 63593453 63593745 -85189727 + AluSx SINE Alu 1 294 -18 297 248 19 96 chr11 63593876 63594033 -85189439 + L1ME4a LINE L1 5964 6108 -13 2101 95 7 16 chr11 63594084 63594389 -85189083 + AluSx SINE Alu 1 302 -10 2423 68 0 0 chr11 63594513 63594824 -85188648 - AluY SINE Alu 0 311 1 853 66 33 0 chr11 63595277 63595398 -85188074 + AluSq/x SINE Alu 1 125 -188 360 0 0 0 chr11 63595398 63595438 -85188034 + (CA)n Simple_repeat Simple_repeat 2 41 0 916 228 138 41 chr11 63595657 63596188 -85187284 - L2 LINE L2 -354 2960 2379 315 281 0 79 chr11 63596272 63596358 -85187114 - L2 LINE L2 -1404 1910 1834 769 130 15 30 chr11 63596358 63596508 -85186964 + FLAM_A SINE Alu 4 133 0 315 281 0 79 chr11 63596508 63596535 -85186937 - L2 LINE L2 -1480 1834 1806 212 211 35 18 chr11 63596822 63596879 -85186593 + MER5B DNA MER1_type 88 145 -33 2174 68 14 0 chr11 63596879 63597159 -85186313 + AluY SINE Alu 1 284 -27 22 0 0 0 chr11 63597159 63597181 -85186291 + AT_rich Low_complexity Low_complexity 1 22 0 199 100 33 0 chr11 63597182 63597212 -85186260 - MER5B DNA MER1_type -130 48 18 279 247 68 0 chr11 63597292 63597365 -85186107 - MIR SINE MIR -62 146 69 842 300 53 12 chr11 63597761 63598008 -85185464 + MIR SINE MIR 6 262 0 252 252 165 31 chr11 63598383 63598510 -85184962 + MIR SINE MIR 65 208 -54 291 222 44 44 chr11 63598960 63599050 -85184422 - MIR SINE MIR -117 145 56 281 294 98 80 chr11 63599153 63599439 -85184033 + L2 LINE L2 2931 3221 -51 805 181 29 0 chr11 63600073 63600244 -85183228 - AluJ SINE Alu 0 312 137 1738 206 48 5 chr11 63600248 63600642 -85182830 + MER97c DNA MER1_type? 75 485 -605 2316 68 3 0 chr11 63600831 63601124 -85182348 + AluSp SINE Alu 1 294 -19 819 188 0 0 chr11 63601153 63601286 -85182186 - AluJ SINE Alu -169 133 1 637 189 50 136 chr11 63601672 63601973 -85181499 + MER97c DNA MER1_type? 812 1086 -4 304 204 11 97 chr11 63602007 63602100 -85181372 - MIR SINE MIR -1 261 177 2151 74 0 0 chr11 63602105 63602424 -85181048 + AluY SINE Alu 1 319 0 192 97 0 0 chr11 63602940 63602971 -85180501 + (CCCCG)n Simple_repeat Simple_repeat 1 31 0 22 0 0 0 chr11 63603190 63603212 -85180260 + GC_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr11 63603323 63603345 -85180127 + (A)n Simple_repeat Simple_repeat 1 22 0 3890 91 23 15 chr11 63603434 63603722 -85179750 - MER1A DNA MER1_type -2173 529 245 1829 138 58 64 chr11 63603722 63603896 -85179576 + THE1C LTR MaLR 1 174 -201 1971 140 0 0 chr11 63603896 63604189 -85179283 + AluSq SINE Alu 3 295 -18 1829 138 58 64 chr11 63604189 63604323 -85179149 + THE1C LTR MaLR 174 309 -66 2395 66 0 7 chr11 63604323 63604626 -85178846 + AluY SINE Alu 1 301 -10 1829 138 58 64 chr11 63604626 63604693 -85178779 + THE1C LTR MaLR 309 375 0 3890 91 23 15 chr11 63604693 63604929 -85178543 - MER1A DNA MER1_type -2457 245 1 562 294 85 15 chr11 63605528 63605729 -85177743 - MIR SINE MIR -13 249 35 212 286 0 0 chr11 63605935 63606005 -85177467 + (TG)n Simple_repeat Simple_repeat 1 70 0 1749 160 3 10 chr11 63607063 63607363 -85176109 - AluJb SINE Alu -14 298 1 25 0 0 0 chr11 63607402 63607427 -85176045 + AT_rich Low_complexity Low_complexity 1 25 0 680 211 74 6 chr11 63607467 63607642 -85175830 + L1ME1 LINE L1 5872 6058 -108 2159 74 0 7 chr11 63607659 63607985 -85175487 - AluSx SINE Alu 0 324 1 518 127 38 0 chr11 63607985 63608064 -85175408 - MSTC LTR MaLR -344 84 3 783 271 77 9 chr11 63608183 63608523 -85174949 + L1ME3A LINE L1 2678 3040 -3106 587 159 0 0 chr11 63608532 63608620 -85174852 + AluJ/FLAM SINE Alu 6 93 -219 246 192 0 0 chr11 63608628 63608680 -85174792 + GA-rich Low_complexity Low_complexity 2 53 0 319 332 55 10 chr11 63608784 63609073 -85174399 + L1ME3A LINE L1 3259 3560 -2586 758 268 59 42 chr11 63609104 63609529 -85173943 + L1ME3A LINE L1 4465 4896 -1250 1163 209 75 25 chr11 63609538 63609820 -85173652 - MER58B DNA MER1_type -1 340 45 557 149 175 26 chr11 63609828 63609942 -85173530 + AluJb SINE Alu 3 133 -179 2266 89 3 3 chr11 63610092 63610396 -85173076 - AluSx SINE Alu -8 304 1 325 270 96 50 chr11 63610403 63610598 -85172874 + L1ME3A LINE L1 5033 5218 -952 1802 124 55 66 chr11 63610598 63610751 -85172721 + THE1C LTR MaLR 1 154 -221 2169 85 0 0 chr11 63610751 63611055 -85172417 - AluSc SINE Alu 0 304 1 1802 124 55 66 chr11 63611055 63611279 -85172193 + THE1C LTR MaLR 154 375 0 325 270 96 50 chr11 63611279 63611491 -85171981 + L1ME3A LINE L1 5218 5963 -207 21 0 0 0 chr11 63611523 63611544 -85171928 + AT_rich Low_complexity Low_complexity 1 21 0 641 199 22 0 chr11 63611657 63611793 -85171679 - LTR43 LTR ERV1 0 602 464 * 2661 154 52 4 chr11 63611789 63612270 -85171202 - LTR43 LTR ERV1 -73 529 26 394 141 115 39 chr11 63612271 63612349 -85171123 - LTR43 LTR ERV1 -518 84 1 1824 175 77 37 chr11 63612350 63612768 -85170704 - L1MB8 LINE L1 -33 6145 5706 1571 212 93 65 chr11 63612768 63612827 -85170645 - MLT2B1 LTR ERVL -1 519 463 2192 75 0 23 chr11 63612827 63613134 -85170338 - AluY SINE Alu -11 300 1 1571 212 93 65 chr11 63613134 63613578 -85169894 - MLT2B1 LTR ERVL -57 463 2 1824 175 77 37 chr11 63613578 63613616 -85169856 - L1MB8 LINE L1 -472 5706 5671 1925 117 7 0 chr11 63613753 63614058 -85169414 - AluSx SINE Alu 0 307 1 2088 100 7 3 chr11 63615714 63616015 -85167457 - AluY SINE Alu -9 302 1 332 239 174 110 chr11 63616688 63616906 -85166566 - MIR SINE MIR 0 262 31 1159 187 0 19 chr11 63616987 63617196 -85166276 + AluJb SINE Alu 85 289 -23 617 148 42 134 chr11 63617416 63617633 -85165839 - L1MC5 LINE L1 -910 7051 6855 706 118 22 30 chr11 63617649 63617784 -85165688 - L1PB1 LINE L1 0 6151 6018 1403 115 0 5 chr11 63617784 63617992 -85165480 - AluSg/x SINE Alu -9 303 97 1228 142 13 27 chr11 63618163 63618388 -85165084 + AluJo SINE Alu 86 307 -5 392 261 71 123 chr11 63618389 63618444 -85165028 + L1MC4a LINE L1 5775 5831 -1977 2173 90 14 0 chr11 63618444 63618734 -85164738 + AluSp SINE Alu 1 294 -19 392 261 71 123 chr11 63618734 63618889 -85164583 + L1MC4a LINE L1 5831 5974 -1834 1828 140 0 26 chr11 63618897 63619204 -85164268 - AluJo SINE Alu -13 299 1 1908 121 0 21 chr11 63619927 63620246 -85163226 - AluSx SINE Alu 0 313 1 243 233 70 23 chr11 63620649 63620735 -85162737 - L1MC4a LINE L1 -1643 6165 6076 2436 74 0 0 chr11 63621375 63621672 -85161800 - AluSg1 SINE Alu -12 297 1 2392 93 0 0 chr11 63621916 63622216 -85161256 - AluSq SINE Alu -13 300 1 34 34 0 17 chr11 63623467 63623498 -85159974 + AT_rich Low_complexity Low_complexity 1 32 -26 1892 146 10 7 chr11 63623498 63623793 -85159679 - AluSx SINE Alu -16 296 1 34 34 0 17 chr11 63623793 63623820 -85159652 + AT_rich Low_complexity Low_complexity 32 58 0 651 200 26 0 chr11 63623820 63623935 -85159537 - FLAM_C SINE Alu -15 118 1 2507 66 0 3 chr11 63624147 63624448 -85159024 - AluY SINE Alu -11 300 1 792 150 15 23 chr11 63624472 63624605 -85158867 - FLAM_C SINE Alu 0 133 2 2288 104 7 3 chr11 63624606 63624915 -85158557 - AluSg SINE Alu 0 310 1 382 255 49 117 chr11 63625060 63625307 -85158165 - L1M4 LINE L1 -5871 984 755 526 258 90 78 chr11 63625355 63625464 -85158008 - L1M4 LINE L1 -6578 281 175 2202 69 35 3 chr11 63625464 63625753 -85157719 - AluY SINE Alu -13 298 1 526 258 90 78 chr11 63625753 63625911 -85157561 - L1M4 LINE L1 -6684 175 11 356 241 0 0 chr11 63625978 63626057 -85157415 - MIR SINE MIR -77 131 53 517 185 269 0 chr11 63627721 63627851 -85155621 - MER5B DNA MER1_type -3 175 11 1249 145 88 8 chr11 63628039 63628301 -85155171 - L1PBa LINE L1 -4787 2076 1794 2094 130 0 0 chr11 63628301 63628607 -85154865 + AluSx SINE Alu 1 306 0 4987 155 59 6 chr11 63628750 63628776 -85154696 + L1PBa LINE L1 2058 2081 -4781 3769 25 0 2 chr11 63628776 63629214 -85154258 + L1PA4 LINE L1 5719 6155 0 4987 155 59 6 chr11 63629214 63630745 -85152727 + L1PBa LINE L1 2081 3699 -3163 910 117 16 0 chr11 63630845 63630973 -85152499 - AluSq/x SINE Alu -183 130 1 59 0 0 0 chr11 63631039 63631098 -85152374 + AT_rich Low_complexity Low_complexity 1 59 0 1313 176 106 18 chr11 63631108 63631381 -85152091 + AluJo SINE Alu 1 297 -15 221 0 0 33 chr11 63631941 63631971 -85151501 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 2281 95 0 0 chr11 63632798 63633092 -85150380 - AluSx SINE Alu -18 294 1 2246 106 0 20 chr11 63633974 63634277 -85149195 - AluSg SINE Alu -13 297 1 2047 126 3 44 chr11 63634344 63634662 -85148810 - AluSq SINE Alu -8 305 1 195 139 0 0 chr11 63634869 63634905 -85148567 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 782 186 90 0 chr11 63634909 63635054 -85148418 - FRAM SINE Alu -21 155 1 2391 80 0 19 chr11 63635933 63636244 -85147228 - AluSc SINE Alu -4 305 1 2229 109 3 3 chr11 63638393 63638696 -85144776 - AluSx SINE Alu -9 303 1 1897 143 14 0 chr11 63638793 63639079 -85144393 - AluSg SINE Alu -11 299 10 37 52 0 0 chr11 63639318 63639376 -85144096 + AT_rich Low_complexity Low_complexity 1 58 0 279 290 23 38 chr11 63639705 63639836 -85143636 - MER5A DNA MER1_type -1 188 60 710 140 15 73 chr11 63640921 63641057 -85142415 + AluJo/FLAM SINE Alu 1 128 -174 1432 187 7 34 chr11 63641059 63641353 -85142119 + AluJo SINE Alu 7 292 -20 2185 126 0 0 chr11 63642561 63642871 -85140601 - AluSx SINE Alu -2 310 1 2404 79 20 0 chr11 63642881 63643185 -85140287 - AluSg SINE Alu 0 310 1 183 42 0 0 chr11 63643590 63643614 -85139858 + (A)n Simple_repeat Simple_repeat 1 24 0 2156 103 13 27 chr11 63643870 63644171 -85139301 + AluSx SINE Alu 1 297 -15 1818 72 18 0 chr11 63644830 63645082 -85138390 - AluY SINE Alu 0 312 57 2331 79 7 13 chr11 63645139 63645443 -85138029 - AluSc SINE Alu -7 302 1 246 256 103 51 chr11 63645482 63645599 -85137873 - MIR SINE MIR -117 145 23 1975 141 0 17 chr11 63645743 63646041 -85137431 - AluSx SINE Alu -19 293 1 414 141 31 0 chr11 63646167 63646231 -85137241 - MER34 LTR ERV1 -20 522 457 1277 197 29 29 chr11 63646231 63646510 -85136962 + AluJb SINE Alu 1 279 -33 381 119 0 0 chr11 63646510 63646569 -85136903 - MSTA LTR MaLR -11 417 359 1954 127 0 0 chr11 63646570 63646830 -85136642 + AluSx SINE Alu 1 260 -52 300 83 0 0 chr11 63646999 63647047 -85136425 + (GA)n Simple_repeat Simple_repeat 2 49 0 1600 132 60 50 chr11 63647067 63647216 -85136256 - AluJo SINE Alu -28 284 129 2132 136 13 0 chr11 63647216 63647517 -85135955 - AluSx SINE Alu -2 310 6 1600 132 60 50 chr11 63647517 63647648 -85135824 - AluJo SINE Alu -183 129 1 1234 183 38 12 chr11 63647673 63647913 -85135559 - MER58 DNA MER1_type -87 254 9 22 0 0 0 chr11 63647945 63647967 -85135505 + AT_rich Low_complexity Low_complexity 1 22 0 1065 226 261 29 chr11 63648158 63648670 -85134802 + L2 LINE L2 2442 2834 -479 2253 77 28 0 chr11 63648670 63648956 -85134516 - AluSp SINE Alu -19 294 1 1065 226 261 29 chr11 63648956 63649126 -85134346 + L2 LINE L2 2834 3280 -33 951 272 95 72 chr11 63649196 63649997 -85133475 + HAL1 LINE L1 56 874 -1633 2225 87 4 0 chr11 63650012 63650287 -85133185 + AluSx SINE Alu 23 298 -14 2173 107 0 4 chr11 63650289 63650569 -85132903 + AluSx SINE Alu 1 279 -33 2103 94 4 0 chr11 63650569 63650845 -85132627 + AluY SINE Alu 27 303 -8 1350 253 56 45 chr11 63650845 63651307 -85132165 + L1ME3 LINE L1 5693 6159 -3 187 318 45 0 chr11 63651333 63651399 -85132073 - MIR SINE MIR -77 185 117 2467 59 10 3 chr11 63651492 63651798 -85131674 + AluY SINE Alu 1 308 -3 3873 91 23 15 chr11 63651887 63652175 -85131297 - MER1A DNA MER1_type -2173 529 245 1824 138 58 64 chr11 63652175 63652349 -85131123 + THE1C LTR MaLR 1 174 -201 2094 140 0 0 chr11 63652349 63652642 -85130830 + AluSq SINE Alu 3 295 -18 1824 138 58 64 chr11 63652642 63652776 -85130696 + THE1C LTR MaLR 174 309 -66 2529 66 0 7 chr11 63652776 63653079 -85130393 + AluY SINE Alu 1 301 -10 1824 138 58 64 chr11 63653079 63653146 -85130326 + THE1C LTR MaLR 309 375 0 3873 91 23 15 chr11 63653146 63653382 -85130090 - MER1A DNA MER1_type -2457 245 1 481 294 85 15 chr11 63653981 63654182 -85129290 - MIR SINE MIR -13 249 35 212 286 0 0 chr11 63654388 63654458 -85129014 + (TG)n Simple_repeat Simple_repeat 1 70 0 1864 160 3 10 chr11 63655514 63655814 -85127658 - AluJb SINE Alu -14 298 1 25 0 0 0 chr11 63655853 63655878 -85127594 + AT_rich Low_complexity Low_complexity 1 25 0 679 211 74 6 chr11 63655918 63656093 -85127379 + L1ME1 LINE L1 5872 6058 -108 2320 74 0 3 chr11 63656110 63656435 -85127037 - AluSx SINE Alu 0 324 1 38 51 0 0 chr11 63656528 63656587 -85126885 + AT_rich Low_complexity Low_complexity 1 59 0 1906 96 8 0 chr11 63656587 63656837 -85126635 - AluY SINE Alu -13 298 47 40 0 0 0 chr11 63656859 63656899 -85126573 + AT_rich Low_complexity Low_complexity 1 40 0 2222 110 0 13 chr11 63657223 63657532 -85125940 + AluSq SINE Alu 1 305 -8 2185 102 14 7 chr11 63657535 63657828 -85125644 + AluSx SINE Alu 1 295 -17 1539 181 23 64 chr11 63658040 63658339 -85125133 + MER58B DNA MER1_type 12 297 -2123 2075 116 13 3 chr11 63658339 63658641 -85124831 + AluSx SINE Alu 1 305 -7 1539 181 23 64 chr11 63658641 63658684 -85124788 + MER58B DNA MER1_type 297 340 -1 1061 110 13 7 chr11 63659017 63659172 -85124300 + L1PA11 LINE L1 6019 6174 0 462 18 0 0 chr11 63659229 63659284 -85124188 + (CA)n Simple_repeat Simple_repeat 2 56 0 1954 124 0 0 chr11 63659395 63659652 -85123820 + AluSx SINE Alu 1 257 -55 2281 114 0 0 chr11 63660006 63660305 -85123167 + AluSx SINE Alu 1 299 -13 1831 136 152 0 chr11 63660305 63660621 -85122851 - MSTA LTR MaLR -64 364 1 408 95 16 0 chr11 63660636 63660699 -85122773 - MER34 LTR ERV1 -69 473 410 3404 83 107 30 chr11 63660699 63661231 -85122241 + LTR61 LTR ERV1 1 573 -22 2492 41 7 3 chr11 63661232 63661526 -85121946 - AluY SINE Alu -16 295 1 590 163 0 0 chr11 63661560 63661652 -85121820 - MER34 LTR ERV1 -127 415 324 627 93 0 0 chr11 63661665 63661751 -85121721 + AluJ/FLAM SINE Alu 1 86 -226 27 0 0 0 chr11 63661758 63661785 -85121687 + AT_rich Low_complexity Low_complexity 1 27 0 2296 138 47 26 chr11 63661832 63662259 -85121213 + L1MA8 LINE L1 5856 6291 0 516 160 0 28 chr11 63662261 63662367 -85121105 + AluSq/x SINE Alu 5 107 -206 21 0 0 0 chr11 63662565 63662586 -85120886 + GC_rich Low_complexity Low_complexity 1 21 0 314 233 44 18 chr11 63663061 63663081 -85120391 + L1MC4 LINE L1 1973 1991 -6331 2292 70 0 7 chr11 63663081 63663366 -85120106 + AluSc SINE Alu 1 283 -26 314 233 44 18 chr11 63663366 63663459 -85120013 + L1MC4 LINE L1 1991 6983 -1339 279 133 0 0 chr11 63663460 63663505 -85119967 + (TATATG)n Simple_repeat Simple_repeat 6 50 0 264 252 0 0 chr11 63663724 63663831 -85119641 + C-rich Low_complexity Low_complexity 1 107 0 255 176 132 0 chr11 63663955 63664023 -85119449 + MER34 LTR ERV1 188 264 -278 1737 138 47 44 chr11 63664596 63664957 -85118515 - L1MA8 LINE L1 -74 6217 5856 27 0 0 0 chr11 63665004 63665031 -85118441 + AT_rich Low_complexity Low_complexity 1 27 0 627 93 0 0 chr11 63665038 63665124 -85118348 - AluJ/FLAM SINE Alu -226 86 1 590 163 0 0 chr11 63665137 63665229 -85118243 + MER34 LTR ERV1 324 415 -127 2389 46 7 3 chr11 63665263 63665548 -85117924 + AluY SINE Alu 1 286 -25 1045 253 87 27 chr11 63665695 63666408 -85117064 + L1ME3A LINE L1 5173 5922 -248 1665 139 145 19 chr11 63666408 63666732 -85116740 - MLT1A1 LTR MaLR 0 365 1 1045 253 87 27 chr11 63666732 63666778 -85116694 + L1ME3A LINE L1 5922 5964 -206 460 217 43 17 chr11 63667093 63667208 -85116264 + LTR25 LTR ERV1 236 353 -441 269 194 0 104 chr11 63667205 63667272 -85116200 + MER61E LTR ERV1 99 158 -411 * 978 171 74 23 chr11 63667366 63667583 -85115889 + MER61E LTR ERV1 342 569 0 21 0 0 0 chr11 63667642 63667663 -85115809 + AT_rich Low_complexity Low_complexity 1 21 0 314 310 98 11 chr11 63669445 63669629 -85113843 - MIR SINE MIR -56 206 7 395 217 137 43 chr11 63669766 63669927 -85113545 + HAL1 LINE L1 2332 2507 0 1707 97 13 0 chr11 63670376 63670602 -85112870 + MER30 DNA MER1_type 2 230 0 494 176 10 10 chr11 63670649 63670677 -85112795 - L1MA10 LINE L1 0 6334 6307 1903 194 92 81 chr11 63670677 63671013 -85112459 - L1ME1 LINE L1 -46 6120 5789 2360 83 0 0 chr11 63671013 63671302 -85112170 - AluY SINE Alu -22 289 1 1903 194 92 81 chr11 63671302 63671610 -85111862 - L1ME1 LINE L1 -377 5789 5486 272 45 318 0 chr11 63671610 63671654 -85111818 - U7 snRNA snRNA -1 62 5 1903 194 92 81 chr11 63671654 63672070 -85111402 - L1ME1 LINE L1 -680 5486 5119 435 234 69 14 chr11 63672079 63672224 -85111248 + L1ME2 LINE L1 5789 5941 -223 * 538 207 15 7 chr11 63672223 63672358 -85111114 - L1ME1 LINE L1 -1033 5113 4978 * 8561 167 11 9 chr11 63672351 63672708 -85110764 - L1PB1 LINE L1 -2 6149 5794 204 40 0 0 chr11 63672708 63672733 -85110739 + (TG)n Simple_repeat Simple_repeat 1 25 0 8561 167 11 9 chr11 63672733 63675002 -85108470 - L1PB1 LINE L1 -357 5794 3514 420 218 18 61 chr11 63675438 63675603 -85107869 + AluSg/x SINE Alu 142 299 -11 2199 109 3 3 chr11 63675946 63676240 -85107232 - AluSc SINE Alu -15 294 1 501 211 0 0 chr11 63676271 63676366 -85107106 - AluJb SINE Alu -1 311 217 1032 144 92 12 chr11 63677936 63678109 -85105363 + MER1B DNA MER1_type 1 187 -110 1487 130 8 45 chr11 63678109 63678355 -85105117 - AluJb SINE Alu -75 237 1 327 276 19 32 chr11 63678863 63679019 -85104453 + L1ME LINE L1 5671 5824 -297 1277 94 12 0 chr11 63679080 63679250 -85104222 + AluY SINE Alu 132 303 -8 291 284 81 7 chr11 63679741 63679889 -85103583 + MIR3 SINE MIR 21 179 -29 331 253 0 0 chr11 63680106 63680181 -85103291 - MIR SINE MIR -164 98 24 281 268 51 38 chr11 63680185 63680342 -85103130 - L2 LINE L2 -852 2462 2304 831 153 0 0 chr11 63682608 63682726 -85100746 + FLAM_A SINE Alu 14 131 -11 1410 112 32 88 chr11 63682778 63682945 -85100527 + AluJo SINE Alu 1 151 -161 1846 164 137 27 chr11 63682945 63683383 -85100089 + LTR19A LTR ERV1 1 486 0 1410 112 32 88 chr11 63683383 63683466 -85100006 + AluJo SINE Alu 151 237 -75 324 195 115 0 chr11 63683693 63683780 -85099692 - L1MC4 LINE L1 -1339 6703 6607 1870 158 3 3 chr11 63683877 63684174 -85099298 + AluSx SINE Alu 1 297 -15 6785 129 163 77 chr11 63684774 63686337 -85097135 + pTR5 LTR ERV1 743 2438 0 261 300 45 9 chr11 63686512 63686622 -85096850 - MIR SINE MIR -134 128 15 258 236 83 14 chr11 63686967 63687039 -85096433 - MLT1A2 LTR MaLR -141 233 157 1979 170 0 3 chr11 63687046 63687357 -85096115 - AluSx SINE Alu -2 310 1 1381 137 8 0 chr11 63687357 63687582 -85095890 - L1PB1 LINE L1 -117 6034 5808 292 329 107 0 chr11 63687894 63688043 -85095429 + MIR SINE MIR 15 179 -83 277 358 67 17 chr11 63689135 63689314 -85094158 - MIR3 SINE MIR -9 199 12 1433 202 3 14 chr11 63689394 63689681 -85093791 - AluJb SINE Alu -8 304 21 219 227 134 41 chr11 63689689 63689786 -85093686 - MIR3 SINE MIR -100 108 3 373 174 47 0 chr11 63690585 63690671 -85092801 - MIR SINE MIR -87 175 86 924 227 13 53 chr11 63690930 63691155 -85092317 - MER58A DNA MER1_type -8 216 1 1835 149 20 24 chr11 63691174 63691469 -85092003 - AluJb SINE Alu -18 294 1 265 202 50 76 chr11 63691478 63691597 -85091875 - Charlie2a DNA MER1_type -45 2817 2702 * 883 221 10 15 chr11 63691586 63691790 -85091682 - Charlie2a DNA MER1_type -1196 1666 1464 229 275 65 22 chr11 63691906 63692044 -85091428 - Charlie2a DNA MER1_type -2469 313 170 1573 159 33 0 chr11 63692584 63692855 -85090617 + MER67B LTR ERV1 1 280 -381 1003 140 109 42 chr11 63692860 63693003 -85090469 + MER2 DNA MER2_type 1 162 -183 1801 128 0 57 chr11 63693003 63693301 -85090171 - AluJb SINE Alu -20 292 12 1003 140 109 42 chr11 63693301 63693350 -85090122 + MER2 DNA MER2_type 162 206 -139 21 57 0 0 chr11 63693361 63693396 -85090076 + AT_rich Low_complexity Low_complexity 1 35 0 2239 160 13 3 chr11 63693463 63693839 -85089633 + MER67B LTR ERV1 282 661 0 366 307 21 62 chr11 63694018 63694063 -85089409 + MIR SINE MIR 55 100 -162 2288 94 16 10 chr11 63694063 63694370 -85089102 - AluSx SINE Alu -3 309 1 366 307 21 62 chr11 63694370 63694516 -85088956 + MIR SINE MIR 100 238 -24 224 290 40 10 chr11 63694809 63694909 -85088563 - L2 LINE L2 -3 3310 3208 1690 164 0 34 chr11 63695062 63695360 -85088112 - AluJb SINE Alu -24 288 1 754 170 32 134 chr11 63695945 63696112 -85087360 + MLT1A1 LTR MaLR 1 137 -228 2437 100 0 0 chr11 63696112 63696422 -85087050 + AluSx SINE Alu 1 310 -2 754 170 32 134 chr11 63696422 63696501 -85086971 + MLT1A1 LTR MaLR 137 222 -143 261 300 45 9 chr11 63696847 63696957 -85086515 + MIR SINE MIR 15 128 -134 2572 106 277 126 chr11 63697129 63697865 -85085607 - pTR5 LTR ERV1 0 2438 39 8664 94 13 27 chr11 63697976 63699266 -85084206 - HERVH LTR ERV1 -5529 2184 913 2603 99 94 12 chr11 63699269 63699683 -85083789 - LTR7 LTR ERV1 -2 448 1 3059 146 45 19 chr11 63699683 63700378 -85083094 - HERVH LTR ERV1 -6796 917 1 3091 93 13 20 chr11 63700381 63700832 -85082640 - LTR7 LTR ERV1 -2 448 1 15063 93 6 0 chr11 63700832 63703688 -85079784 + L1PA8 LINE L1 3297 6158 -14 347 242 74 11 chr11 63705574 63705669 -85077803 - MLT1K LTR MaLR -7 581 481 459 205 106 8 chr11 63706051 63706220 -85077252 - LTR16A LTR ERVL -12 438 222 * 1330 196 4 0 chr11 63706200 63706429 -85077043 + MSTB2 LTR MaLR 228 457 0 1020 301 79 20 chr11 63706486 63707207 -85076265 - HERV16 LTR ERVL -2628 2368 1608 380 279 43 14 chr11 63707212 63707352 -85076120 - LTR16A LTR ERVL -7 443 300 1982 240 103 12 chr11 63707354 63707870 -85075602 + MLT1F1 LTR MaLR 5 567 0 253 361 21 0 chr11 63707878 63708022 -85075450 + MLT1F1-int LTR MaLR 9 155 -1216 567 259 97 5 chr11 63708060 63708276 -85075196 + MLT1F1-int LTR MaLR 311 546 -825 1689 109 36 25 chr11 63708317 63708592 -85074880 + L1MA2 LINE L1 5848 6125 -179 2621 14 0 3 chr11 63708592 63708879 -85074593 + AluYa5 SINE Alu 21 306 -5 28 29 0 0 chr11 63708879 63708914 -85074558 + AT_rich Low_complexity Low_complexity 1 35 0 758 154 7 0 chr11 63709025 63709161 -85074311 - L1P LINE L1 -964 5182 5046 * 7657 138 2 8 chr11 63709156 63710348 -85073124 - L1P LINE L1 -1450 4696 3511 207 0 0 0 chr11 63710348 63710371 -85073101 + (T)n Simple_repeat Simple_repeat 1 23 0 684 269 55 6 chr11 63710471 63710783 -85072689 + L1M4 LINE L1 4283 4609 -1537 649 321 44 0 chr11 63710777 63711048 -85072424 - L1ME3A LINE L1 -179 5991 5709 * 22224 153 48 8 chr11 63711921 63716263 -85067209 - L1MA3 LINE L1 0 7724 2951 2440 73 0 0 chr11 63716263 63716591 -85066881 + AluY SINE Alu 1 311 0 22224 153 48 8 chr11 63716591 63719649 -85063823 - L1MA3 LINE L1 -4773 2951 15 498 320 0 17 chr11 63720235 63720407 -85063065 - MER5B DNA MER1_type -1 177 9 277 164 16 16 chr11 63722028 63722089 -85061383 - L1MB7 LINE L1 0 6184 6124 40689 52 4 4 chr11 63722098 63728253 -85055219 - L1PA5 LINE L1 0 6154 1 340 189 54 0 chr11 63728459 63728533 -85054939 + MSTD LTR MaLR 3 80 -348 1267 111 156 16 chr11 63728533 63728777 -85054695 + L1PA16 LINE L1 5888 6165 -1 1019 252 25 11 chr11 63728797 63729071 -85054401 + MSTD LTR MaLR 119 396 0 434 307 23 23 chr11 63729707 63729883 -85053589 - MER5B DNA MER1_type -2 176 1 220 276 87 47 chr11 63729934 63730061 -85053411 + L2 LINE L2 3181 3312 -1 3709 129 35 104 chr11 63731378 63732280 -85051192 - Tigger3(Golem) DNA MER2_type -1 3028 2189 327 301 0 10 chr11 63732641 63732744 -85050728 - LTR16A LTR ERVL -133 317 216 231 333 16 16 chr11 63733494 63733617 -85049855 + MLT1-int LTR MaLR 756 878 -493 753 156 37 0 chr11 63733915 63734050 -85049422 - MER73 LTR ERVL -5 639 500 * 1011 96 0 19 chr11 63734031 63734188 -85049284 - MLT2A2 LTR ERVL -299 154 1 200 274 0 0 chr11 63734348 63734399 -85049073 + CT-rich Low_complexity Low_complexity 3 53 0 183 42 0 0 chr11 63734459 63734483 -85048989 + (CAAAAA)n Simple_repeat Simple_repeat 3 26 0 227 213 0 0 chr11 63736889 63736936 -85046536 + T-rich Low_complexity Low_complexity 1 47 0 2085 58 0 7 chr11 63736937 63737211 -85046261 - L1PA4 LINE L1 -3 6152 5881 22 0 0 0 chr11 63737241 63737263 -85046209 + AT_rich Low_complexity Low_complexity 1 22 0 2163 114 3 10 chr11 63738976 63739275 -85044197 + AluSp SINE Alu 1 297 -16 4875 210 29 28 chr11 63739703 63740058 -85043414 + HERVL74 LTR ERVL 1030 1383 -4302 6039 107 9 2 chr11 63740058 63741318 -85042154 + L1PA13 LINE L1 4880 6160 -3 4875 210 29 28 chr11 63741318 63742534 -85040938 + HERVL74 LTR ERVL 1383 2681 -3004 2169 143 22 6 chr11 63742534 63742892 -85040580 - THE1B LTR MaLR 0 364 1 4875 210 29 28 chr11 63742892 63743226 -85040246 + HERVL74 LTR ERVL 2681 3013 -2672 2260 194 25 32 chr11 63743226 63743709 -85039763 + L1 LINE L1 4335 4815 -1331 2058 137 24 0 chr11 63743709 63744002 -85039470 + AluSx SINE Alu 1 300 -12 2260 194 25 32 chr11 63744002 63744117 -85039355 + L1 LINE L1 4815 4929 -1217 * 15745 104 22 8 chr11 63744115 63746653 -85036819 + L1P LINE L1 1759 4334 -1812 6344 53 7 0 chr11 63746648 63747482 -85035990 - L1PA4 LINE L1 -1 6154 5315 * 1893 145 40 24 chr11 63747482 63747778 -85035694 - AluSq SINE Alu -12 301 1 383 329 59 12 chr11 63747908 63748078 -85035394 + MER5B DNA MER1_type 1 178 0 2444 112 20 6 chr11 63748818 63749176 -85034296 - THE1B LTR MaLR -1 363 1 5544 172 20 32 chr11 63749176 63749269 -85034203 - L1P LINE L1 -1492 4654 4561 2543 128 5 3 chr11 63749269 63749643 -85033829 - THE1C LTR MaLR 0 375 1 5544 172 20 32 chr11 63749643 63750729 -85032743 - L1P LINE L1 -1585 4561 3489 342 0 0 0 chr11 63750736 63750774 -85032698 + (TTA)n Simple_repeat Simple_repeat 2 39 0 5146 233 45 21 chr11 63750789 63753238 -85030234 - L1M2 LINE L1 -4110 2679 4 347 300 7 64 chr11 63755143 63755283 -85028189 - MIR SINE MIR -65 197 66 282 298 19 29 chr11 63755356 63755460 -85028012 - MER69 DNA AcHobo -2423 103 1 270 0 0 0 chr11 63756480 63756510 -85026962 + (TG)n Simple_repeat Simple_repeat 2 31 0 797 268 41 69 chr11 63756692 63756759 -85026713 - L1ME3 LINE L1 -28 6134 6067 2322 128 0 0 chr11 63756759 63757071 -85026401 + AluSx SINE Alu 1 312 0 797 268 41 69 chr11 63757071 63757495 -85025977 - L1ME3 LINE L1 -95 6067 5657 23 68 0 0 chr11 63757511 63757555 -85025917 + AT_rich Low_complexity Low_complexity 1 44 0 996 218 35 49 chr11 63758063 63758407 -85025065 + L1M1 LINE L1 3280 3618 -3947 186 356 67 31 chr11 63759968 63760193 -85023279 - L3 LINE CR1 -29 1548 1316 324 307 18 18 chr11 63760341 63760455 -85023017 - MER81 DNA DNA 0 114 1 227 325 114 49 chr11 63761124 63761370 -85022102 - MIR SINE MIR 0 262 1 26 64 0 0 chr11 63762178 63762225 -85021247 + AT_rich Low_complexity Low_complexity 1 47 0 1282 179 44 4 chr11 63762225 63762454 -85021018 - AluJb SINE Alu -31 281 44 4580 159 43 43 chr11 63762458 63762672 -85020800 - L1MA6 LINE L1 0 7719 7507 1915 119 58 0 chr11 63762672 63762949 -85020523 - AluY SINE Alu -18 293 1 4580 159 43 43 chr11 63762949 63763906 -85019566 - L1MA6 LINE L1 -212 7507 6545 4665 207 77 37 chr11 63763920 63766167 -85017305 - L1MA6 LINE L1 -2578 4987 2644 1634 189 78 74 chr11 63766200 63766466 -85017006 - MLT1C LTR MaLR -2 465 195 1740 145 93 0 chr11 63766466 63766735 -85016737 - AluSx SINE Alu -18 294 1 1634 189 78 74 chr11 63766735 63766929 -85016543 - MLT1C LTR MaLR -272 195 3 3334 122 27 0 chr11 63767118 63767641 -85015831 + L1PA15 LINE L1 5626 6162 -3 232 192 19 0 chr11 63767722 63767774 -85015698 + T-rich Low_complexity Low_complexity 2 54 0 30 27 0 0 chr11 63768515 63768552 -85014920 + AT_rich Low_complexity Low_complexity 1 37 0 1372 64 10 15 chr11 63768696 63768899 -85014573 - LTR14A LTR ERVK 0 344 143 5559 101 7 12 chr11 63768930 63769766 -85013706 - MER11C LTR ERVK -14 1057 226 37385 44 5 1 chr11 63769773 63775898 -85007574 + L1PA4 LINE L1 10 6147 -8 986 176 5 26 chr11 63775899 63776092 -85007380 + AluJb SINE Alu 121 309 -3 1116 79 0 23 chr11 63776100 63776277 -85007195 + (GAAA)n Simple_repeat Simple_repeat 2 174 0 600 135 0 10 chr11 63776283 63776387 -85007085 + LTR56 LTR ERV1 327 429 -16 594 76 0 0 chr11 63776395 63776474 -85006998 - LOR1b LTR ERV1 -382 79 1 508 156 0 22 chr11 63776483 63776573 -85006899 - LOR1b-int LTR ERV1 -2 8118 8031 801 157 0 0 chr11 63776574 63776708 -85006764 - LOR1-int LTR ERV1 -2057 6063 5930 * 898 106 53 16 chr11 63776707 63776896 -85006576 - LOR1-int LTR ERV1 -3772 4348 4153 2235 170 12 2 chr11 63776898 63777303 -85006169 + L1PA8 LINE L1 1 409 -5466 1333 165 6 0 chr11 63777330 63777641 -85005831 - L1P3 LINE L1 -4668 2119 1806 365 178 0 0 chr11 63777642 63777715 -85005757 + L1PA8 LINE L1 436 508 -5367 4987 197 24 67 chr11 63777717 63779636 -85003836 + L1PA8 LINE L1 719 2606 -3855 17610 137 7 0 chr11 63779637 63783385 -85000087 + L1PA8 LINE L1 2733 6492 0 1536 136 0 0 chr11 63784372 63784615 -84998857 - LOR1-int LTR ERV1 -3957 4163 3921 39574 61 4 0 chr11 63784869 63789569 -84993903 - L1PA5 LINE L1 -4 6150 1417 458 17 0 0 chr11 63789569 63789627 -84993845 - L1PA4 LINE L1 -3 6152 6095 39574 61 4 0 chr11 63789627 63791050 -84992422 - L1PA5 LINE L1 -4737 1417 1 9538 167 23 24 chr11 63791052 63793101 -84990371 - L1P LINE L1 -2953 3193 1147 933 175 0 6 chr11 63793102 63793279 -84990193 - L1 LINE L1 -2186 3960 3785 243 267 199 58 chr11 63793587 63793764 -84989708 - L2 LINE L2 -1 3312 3161 309 294 40 45 chr11 63793764 63793941 -84989531 + MER5B DNA MER1_type 1 176 -2 243 267 199 58 chr11 63793941 63794040 -84989432 - L2 LINE L2 -152 3161 2997 7494 29 0 0 chr11 63794490 63795755 -84987717 + L1PA3 LINE L1 4918 6183 0 14151 40 0 0 chr11 63795823 63797625 -84985847 - L1PA4 LINE L1 -892 5254 3453 7344 32 5 0 chr11 63797625 63798506 -84984966 + L1PA4 LINE L1 5270 6155 0 21 0 0 0 chr11 63798826 63798847 -84984625 + AT_rich Low_complexity Low_complexity 1 21 0 1359 236 38 33 chr11 63799059 63799453 -84984019 - MSTD LTR MaLR 0 396 1 280 382 40 0 chr11 63800263 63800535 -84982937 + L1ME3A LINE L1 5709 5991 -179 * 1152 283 52 12 chr11 63800529 63801180 -84982292 - L1M4 LINE L1 -1537 4609 3933 40265 38 24 1 chr11 63801197 63807213 -84976259 - L1PA3 LINE L1 -2 6153 1 1444 171 30 0 chr11 63807225 63807494 -84975978 + Tigger3(Golem) DNA MER2_type 69 3035 0 24 32 0 0 chr11 63807821 63807852 -84975620 + AT_rich Low_complexity Low_complexity 1 31 0 201 74 0 0 chr11 63808110 63808137 -84975335 + (CA)n Simple_repeat Simple_repeat 2 28 0 234 119 0 24 chr11 63808220 63808262 -84975210 - L1P LINE L1 -3589 2557 2517 915 201 81 104 chr11 63808857 63809240 -84974232 - MLT1A2 LTR MaLR 0 374 1 2903 148 92 18 chr11 63809615 63810231 -84973241 - L1PA16 LINE L1 -14 6152 5491 2037 199 21 8 chr11 63810246 63810719 -84972753 + L1 LINE L1 3868 4346 -1800 2350 128 31 10 chr11 63811125 63811167 -84972305 - L1PA12 LINE L1 0 7606 7566 279 0 0 0 chr11 63811167 63811198 -84972274 + (TTTTC)n Simple_repeat Simple_repeat 5 35 0 2304 50 4 0 chr11 63811198 63811478 -84971994 - AluY SINE Alu -30 281 1 2350 128 31 10 chr11 63811478 63811826 -84971646 - L1PA12 LINE L1 -39 7567 7207 530 86 0 0 chr11 63811840 63811910 -84971562 - L1PA10 LINE L1 -11 6157 6088 12493 234 22 15 chr11 63811910 63816902 -84966570 - L1PA12 LINE L1 -377 7226 2182 4159 62 0 8 chr11 63817071 63817606 -84965866 - L1PA6 LINE L1 -2 6152 5622 455 332 60 27 chr11 63818418 63818785 -84964687 - L1PA12 LINE L1 -7202 379 1 414 204 53 23 chr11 63818787 63818919 -84964553 - MER53 DNA DNA -52 137 2 361 297 34 0 chr11 63819641 63819759 -84963713 - L2 LINE L2 0 3313 3192 4593 46 0 0 chr11 63819848 63820440 -84963032 + L1P LINE L1 4421 5012 -1134 3431 20 0 0 chr11 63820440 63820833 -84962639 + L1PA3 LINE L1 5758 6151 -4 1034 171 10 5 chr11 63821076 63821275 -84962197 - L1MB1 LINE L1 -1 6167 5968 11528 39 0 1 chr11 63821277 63822786 -84960686 - L1PA4 LINE L1 -2435 3711 2204 13620 36 0 1 chr11 63822788 63825215 -84958257 + L1PA4 LINE L1 3726 6153 -2 3135 44 0 5 chr11 63825215 63825601 -84957871 + L1PA4 LINE L1 5770 6155 0 1210 196 23 17 chr11 63825603 63825904 -84957568 + L1MB7 LINE L1 5862 6164 -20 420 313 11 22 chr11 63827510 63827689 -84955783 + MER5B DNA MER1_type 1 177 -1 207 291 114 25 chr11 63827714 63827793 -84955679 - L2 LINE L2 -219 3053 2968 329 322 57 4 chr11 63829074 63829319 -84954153 + L1ME3A LINE L1 5709 5966 -204 465 291 143 13 chr11 63829343 63829803 -84953669 - L1M4 LINE L1 -1541 4605 4086 267 103 0 0 chr11 63829882 63829921 -84953551 + (T)n Simple_repeat Simple_repeat 1 39 0 308 240 48 0 chr11 63831004 63831129 -84952343 + MER53 DNA DNA 20 150 -39 535 217 40 17 chr11 63831161 63831336 -84952136 - MER53 DNA DNA -10 179 1 349 263 81 0 chr11 63831860 63831959 -84951513 - MIR SINE MIR -60 202 96 321 253 21 91 chr11 63831993 63832179 -84951293 - MER69A DNA AcHobo 0 177 5 234 322 42 8 chr11 63832972 63833090 -84950382 - L2 LINE L2 0 3313 3192 4788 241 29 9 chr11 63833473 63834097 -84949375 + L1PA15 LINE L1 2129 2739 -3407 180 0 0 0 chr11 63834097 63834117 -84949355 + (GAAA)n Simple_repeat Simple_repeat 2 21 0 4788 241 29 9 chr11 63834117 63835026 -84948446 + L1PA15 LINE L1 2739 3692 -2454 5763 210 15 45 chr11 63835027 63836499 -84946973 + L1PA15 LINE L1 3867 5294 -871 2172 117 0 0 chr11 63836499 63836806 -84946666 - AluSx SINE Alu 0 307 1 5763 210 15 45 chr11 63836806 63837653 -84945819 + L1PA15 LINE L1 5294 6165 0 591 351 44 16 chr11 63839501 63839868 -84943604 + L1M3c LINE L1 24 400 -5741 812 262 92 5 chr11 63840258 63840543 -84942929 + L1M3c LINE L1 915 1241 -4890 2356 111 0 0 chr11 63840543 63840849 -84942623 + AluSc SINE Alu 1 306 -3 812 262 92 5 chr11 63840849 63840933 -84942539 + L1M3c LINE L1 1241 1316 -4815 * 6001 102 16 9 chr11 63840927 63841949 -84941523 - L1PA10 LINE L1 -22 6146 5128 40726 36 23 0 chr11 63842054 63847709 -84935763 - L1P1 LINE L1 -368 5787 1 33292 86 30 1 chr11 63847709 63852566 -84930906 - L1PA10 LINE L1 -1141 5005 11 13533 149 54 26 chr11 63852570 63855219 -84928253 - L1P LINE L1 -3414 2732 11 411 176 2 4 chr11 63855657 63855751 -84927721 + L1M LINE L1 5336 5428 -884 3326 148 64 114 chr11 63855754 63856308 -84927164 + L1MA4A LINE L1 5212 5676 -627 192 40 0 0 chr11 63856308 63856333 -84927139 + (TG)n Simple_repeat Simple_repeat 1 25 0 3326 148 64 114 chr11 63856333 63856928 -84926544 + L1MA4A LINE L1 5676 6299 -4 3948 179 29 10 chr11 63857007 63857938 -84925534 - L1 LINE L1 -1934 5172 4224 228 308 0 0 chr11 63857966 63858073 -84925399 - L1 LINE L1 -4967 2063 1957 21 0 0 0 chr11 63858073 63858094 -84925378 + AT_rich Low_complexity Low_complexity 1 21 0 3679 25 0 2 chr11 63858094 63858529 -84924943 - L1PA4 LINE L1 -3 6152 5719 2071 130 0 0 chr11 63858698 63859004 -84924468 - AluSx SINE Alu 0 306 1 1147 145 88 8 chr11 63859004 63859266 -84924206 + L1PBa LINE L1 1794 2076 -4787 561 185 269 0 chr11 63859453 63859583 -84923889 + MER5B DNA MER1_type 11 175 -3 376 241 0 0 chr11 63861247 63861326 -84922146 + MIR SINE MIR 53 131 -77 426 276 82 71 chr11 63861393 63861551 -84921921 + L1M4b LINE L1 11 175 -6684 2140 73 35 3 chr11 63861551 63861840 -84921632 + AluY SINE Alu 1 298 -13 426 276 82 71 chr11 63861840 63861949 -84921523 + L1M4b LINE L1 175 281 -6578 322 293 48 54 chr11 63862057 63862224 -84921248 + L1M4b LINE L1 805 970 -5885 2332 100 3 0 chr11 63862389 63862698 -84920774 + AluSg SINE Alu 1 310 0 2280 256 67 24 chr11 63862702 63862776 -84920696 + L1M4b LINE L1 1204 1273 -5865 191 36 36 0 chr11 63862776 63862804 -84920668 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2280 256 67 24 chr11 63862804 63864035 -84919437 + L1M4b LINE L1 1273 2714 -4424 5485 238 62 19 chr11 63864040 63866163 -84917309 + L1MEc LINE L1 1739 3926 -2289 1712 155 52 0 chr11 63866163 63866454 -84917018 + AluSx SINE Alu 1 306 -6 5485 238 62 19 chr11 63866454 63866623 -84916849 + L1MEc LINE L1 3926 4086 -2129 1265 140 23 0 chr11 63866662 63866876 -84916596 - Tigger1 DNA MER2_type 0 2418 2200 755 201 0 0 chr11 63866872 63867011 -84916461 - Tigger1 DNA MER2_type -2279 139 1 * 2043 111 0 46 chr11 63867032 63867339 -84916133 - AluSx SINE Alu -17 295 3 1234 237 106 5 chr11 63867344 63867758 -84915714 + L1MEc LINE L1 4326 4781 -1434 2693 75 65 5 chr11 63867947 63868345 -84915127 - L1PA11 LINE L1 0 6174 5753 2134 133 0 10 chr11 63870057 63870358 -84913114 - AluSx SINE Alu -14 298 1 192 97 0 0 chr11 63870987 63871018 -84912454 + (TC)n Simple_repeat Simple_repeat 2 32 0 369 0 0 0 chr11 63871018 63871059 -84912413 + (CA)n Simple_repeat Simple_repeat 1 41 0 406 245 29 36 chr11 63871345 63871484 -84911988 - LTR41 LTR ERVL -634 139 2 277 316 31 20 chr11 63874234 63874332 -84909140 + MIR3 SINE MIR 15 113 -95 1914 166 6 13 chr11 63874339 63874653 -84908819 - AluJb SINE Alu 0 312 1 378 0 0 0 chr11 63874750 63874792 -84908680 + (CA)n Simple_repeat Simple_repeat 2 43 0 307 221 16 82 chr11 63874798 63874862 -84908610 + Charlie8 DNA MER1_type 73 127 -203 2221 118 3 3 chr11 63874862 63875167 -84908305 - AluSx SINE Alu -7 305 1 307 221 16 82 chr11 63875167 63875224 -84908248 + Charlie8 DNA MER1_type 127 186 -144 2288 93 0 3 chr11 63875499 63875788 -84907684 - AluSc SINE Alu -21 288 1 239 350 25 38 chr11 63876152 63876312 -84907160 + MIR3 SINE MIR 30 187 -21 221 250 0 0 chr11 63876866 63876910 -84906562 - L2 LINE L2 -19 3253 3210 224 308 131 19 chr11 63876939 63877046 -84906426 - L3 LINE CR1 -22 1555 1437 188 294 20 0 chr11 63878278 63878329 -84905143 - L2 LINE L2 0 3313 3262 3573 128 38 2 chr11 63879869 63880448 -84903024 + L1P3 LINE L1 6 605 -5856 828 147 47 21 chr11 63880463 63880654 -84902818 + L1P LINE L1 3108 3303 -2843 3217 78 9 16 chr11 63880656 63881107 -84902365 - LTR7 LTR ERV1 -2 448 1 13403 78 11 3 chr11 63881107 63883036 -84900436 - HERVH LTR ERV1 0 7713 5769 1227 100 0 0 chr11 63883032 63883212 -84900260 - HERVH LTR ERV1 -3046 4667 4488 * 3242 113 0 6 chr11 63883214 63883719 -84899753 - HERVH LTR ERV1 -3720 3993 3492 928 108 7 0 chr11 63883711 63883859 -84899613 - HERVH LTR ERV1 -4425 3288 3140 * 4501 101 1 21 chr11 63883838 63884563 -84898909 - HERVH LTR ERV1 -4718 2995 2285 225 0 0 0 chr11 63884699 63884724 -84898748 + (T)n Simple_repeat Simple_repeat 1 25 0 1770 156 24 29 chr11 63884724 63885140 -84898332 - L1PBa LINE L1 -2629 4936 4523 * 12074 189 18 21 chr11 63885132 63887433 -84896039 - L1 LINE L1 -931 6634 4554 7080 60 9 19 chr11 63887433 63889081 -84894391 - L1PA8 LINE L1 -8 6164 4525 12074 189 18 21 chr11 63889081 63890969 -84892503 - L1 LINE L1 -3011 4554 2663 2809 213 86 1 chr11 63891187 63891928 -84891544 - L1 LINE L1 -1433 6132 5329 * 3107 144 9 0 chr11 63891926 63892480 -84890992 - L1P LINE L1 -4365 1781 1223 * 7496 137 65 11 chr11 63892463 63893997 -84889475 - L1PBa LINE L1 -3997 3569 1810 3074 244 77 5 chr11 63894010 63894929 -84888543 - L1PBa LINE L1 -5821 1745 761 12799 161 38 4 chr11 63894933 63897172 -84886300 - L1 LINE L1 -5233 2332 17 231 225 84 0 chr11 63897175 63897246 -84886226 - L1 LINE L1 -4974 2591 2515 9023 204 50 14 chr11 63897253 63899958 -84883514 + L1M1 LINE L1 3332 6133 -1432 2760 191 40 9 chr11 63899958 63900209 -84883263 - L1P4 LINE L1 -600 5565 5323 180 0 0 0 chr11 63900209 63900229 -84883243 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2760 191 40 9 chr11 63900229 63900860 -84882612 - L1P4 LINE L1 -842 5323 4668 369 127 70 0 chr11 63900860 63900931 -84882541 + L1PA14 LINE L1 6086 6161 0 264 391 35 0 chr11 63900966 63901053 -84882419 - MIR SINE MIR -170 92 3 729 264 41 39 chr11 63901443 63901806 -84881666 + L1MB1 LINE L1 2314 2677 -4172 748 217 6 0 chr11 63901812 63901973 -84881499 + L1MB1 LINE L1 4710 4871 -1977 180 97 0 0 chr11 63902070 63902101 -84881371 + (CAAT)n Simple_repeat Simple_repeat 2 32 0 2603 162 104 24 chr11 63902101 63902717 -84880755 + L1MB1 LINE L1 6178 6842 -28 383 18 107 0 chr11 63902717 63902773 -84880699 - L1P LINE L1 -1873 4273 4212 4328 175 14 10 chr11 63902810 63903300 -84880172 + MER54B LTR ERVL 1 498 -295 512 67 13 0 chr11 63903300 63903407 -84880065 + L1PB1 LINE L1 6066 6173 0 4328 175 14 10 chr11 63903407 63903702 -84879770 + MER54B LTR ERVL 498 790 -3 201 291 50 43 chr11 63906609 63906750 -84876722 - MIR SINE MIR 0 262 121 1581 107 22 0 chr11 63907599 63907824 -84875648 + MER30 DNA MER1_type 1 230 0 2188 120 7 10 chr11 63908219 63908554 -84874918 + AluSc SINE Alu 1 334 0 306 164 0 0 chr11 63908674 63908729 -84874743 + A-rich Low_complexity Low_complexity 1 55 0 2083 157 39 34 chr11 63909323 63909871 -84873601 - MLT2A2 LTR ERVL 0 554 1 489 198 35 0 chr11 63909893 63910009 -84873463 + L1MA9 LINE L1 6191 6310 -2 24 0 0 0 chr11 63910296 63910320 -84873152 + AT_rich Low_complexity Low_complexity 1 24 0 3163 194 29 9 chr11 63910320 63911089 -84872383 + L1PB3 LINE L1 4615 5398 -748 3731 107 73 40 chr11 63911091 63911275 -84872197 + L1PB3 LINE L1 5458 5635 -519 2647 87 11 26 chr11 63911275 63911656 -84871816 - THE1C LTR MaLR 0 375 1 3731 107 73 40 chr11 63911656 63912145 -84871327 + L1PB3 LINE L1 5635 6153 -1 28 29 0 0 chr11 63912182 63912217 -84871255 + AT_rich Low_complexity Low_complexity 1 35 0 2468 219 39 63 chr11 63912385 63913427 -84870045 + L1MA10 LINE L1 4802 5867 -467 270 0 0 0 chr11 63913427 63913457 -84870015 + (CA)n Simple_repeat Simple_repeat 2 31 0 2468 219 39 63 chr11 63913457 63913491 -84869981 + L1MA10 LINE L1 5867 5900 -434 455 150 10 30 chr11 63913491 63913591 -84869881 + L1PA16 LINE L1 6069 6166 0 2468 219 39 63 chr11 63913591 63913988 -84869484 + L1MA10 LINE L1 5900 6236 -98 315 0 0 0 chr11 63913989 63914024 -84869448 + (CA)n Simple_repeat Simple_repeat 2 36 0 26 30 0 0 chr11 63914052 63914085 -84869387 + AT_rich Low_complexity Low_complexity 1 33 0 302 175 25 12 chr11 63915566 63915646 -84867826 + L1MA7 LINE L1 5877 5957 -334 805 356 16 25 chr11 63915654 63916100 -84867372 + L1 LINE L1 1083 1524 -5503 409 281 16 66 chr11 63916921 63917177 -84866295 + L1 LINE L1 1728 1970 -5060 41018 42 5 12 chr11 63917178 63923363 -84860109 + L1PA4 LINE L1 13 6152 -3 21 0 0 0 chr11 63923363 63923384 -84860088 + AT_rich Low_complexity Low_complexity 1 21 0 228 308 0 0 chr11 63923384 63923491 -84859981 + L1 LINE L1 1957 2063 -4967 4028 177 29 9 chr11 63923519 63924449 -84859023 + L1 LINE L1 4224 5172 -1934 3335 148 64 114 chr11 63924528 63925123 -84858349 - L1MA4A LINE L1 -4 6299 5792 192 40 0 0 chr11 63925123 63925148 -84858324 + (CA)n Simple_repeat Simple_repeat 1 25 0 3335 148 64 114 chr11 63925148 63925702 -84857770 - L1MA4A LINE L1 -511 5792 5212 411 176 2 4 chr11 63925705 63925799 -84857673 - L1M LINE L1 -884 5428 5336 13320 151 51 31 chr11 63926237 63928886 -84854586 + L1P LINE L1 11 2732 -3414 35764 84 30 1 chr11 63928890 63933744 -84849728 + L1PA7 LINE L1 11 5005 -1141 43652 33 21 0 chr11 63933744 63939767 -84843705 + L1PA2 LINE L1 1 6154 -1 7255 74 3 0 chr11 63939776 63940964 -84842508 + L1PA7 LINE L1 4992 6181 0 27 29 0 0 chr11 63941160 63941194 -84842278 + AT_rich Low_complexity Low_complexity 1 34 0 413 264 33 99 chr11 63942136 63942348 -84841124 - MLT1-int LTR MaLR -182 1189 992 405 281 49 37 chr11 63942532 63942696 -84840776 - MLT1-int LTR MaLR -507 864 699 1289 125 0 0 chr11 63942842 63943034 -84840438 - L1MA2 LINE L1 0 6304 6113 231 33 0 0 chr11 63943034 63943058 -84840414 + (T)n Simple_repeat Simple_repeat 1 24 0 1885 148 40 23 chr11 63943193 63943496 -84839976 + AluSq SINE Alu 1 308 -5 300 309 60 7 chr11 63944799 63944948 -84838524 - L1MEc LINE L1 -3721 2494 2338 * 1057 197 50 123 chr11 63944941 63945440 -84838032 - L1MD2 LINE L1 -1 6356 5769 766 221 33 123 chr11 63945456 63945822 -84837650 - L1MA9 LINE L1 -38 6274 5942 21252 90 8 3 chr11 63945848 63949468 -84834004 - L1PA7 LINE L1 -1 6153 2515 276 320 0 8 chr11 63949468 63949590 -84833882 - L1M4 LINE L1 -1459 4687 4567 317 254 46 23 chr11 63949597 63949727 -84833745 - L1MEc LINE L1 -4002 2394 2262 562 258 96 53 chr11 63949824 63950220 -84833252 + L1ME2 LINE L1 5590 6002 -162 * 10016 231 48 20 chr11 63950199 63951632 -84831840 + L1M2 LINE L1 7 1398 -5450 2986 45 22 3 chr11 63951632 63951990 -84831482 + L1PA4 LINE L1 5791 6155 0 10016 231 48 20 chr11 63951990 63954640 -84828832 + L1M2 LINE L1 1398 4269 -2579 952 319 20 18 chr11 63954656 63955057 -84828415 + L1PA12 LINE L1 14 415 -7166 538 342 59 48 chr11 63955816 63956088 -84827384 + L1M2 LINE L1 793 1067 -5782 2144 230 242 6 chr11 63956295 63957095 -84826377 + L1PA12 LINE L1 1776 2822 -4762 314 83 0 21 chr11 63957095 63957143 -84826329 + MER4C LTR ERV1 419 465 0 5012 228 30 4 chr11 63957143 63958340 -84825132 + L1M2 LINE L1 4314 5541 -1307 862 155 7 0 chr11 63958341 63958483 -84824989 + L1P LINE L1 3754 3896 -2250 522 243 7 14 chr11 63958652 63958792 -84824680 + L1M2 LINE L1 5843 5981 -867 1156 329 50 33 chr11 63958811 63959567 -84823905 - LTR57-int LTR ERVL -2705 2638 1870 2552 213 25 17 chr11 63959837 63960362 -84823110 + LTR31 LTR ERV1 76 604 -15 8144 30 0 0 chr11 63961737 63962875 -84820597 + L1PA4 LINE L1 5016 6152 -3 1733 212 19 79 chr11 63963400 63963714 -84819758 - LTR47B LTR ERVL 0 443 165 2102 125 3 0 chr11 63963714 63964002 -84819470 + AluY SINE Alu 1 289 -22 1733 212 19 79 chr11 63964002 63964158 -84819314 - LTR47B LTR ERVL -278 165 1 330 304 83 33 chr11 63964957 63965138 -84818334 + MIR SINE MIR 73 262 0 386 353 0 7 chr11 63965442 63965581 -84817891 + MIR SINE MIR 13 150 -112 345 149 15 15 chr11 63965845 63965912 -84817560 + MLT1B LTR MaLR 107 173 -217 2226 123 0 7 chr11 63965916 63966226 -84817246 + AluSx SINE Alu 1 308 -4 185 91 0 30 chr11 63966235 63966268 -84817204 + (GAA)n Simple_repeat Simple_repeat 3 34 0 1262 168 9 30 chr11 63966268 63966500 -84816972 + MLT1B LTR MaLR 164 390 0 310 250 29 0 chr11 63968690 63968758 -84814714 + MER5B DNA MER1_type 94 163 -15 1268 116 0 6 chr11 63969288 63969460 -84814012 + AluSg/x SINE Alu 130 300 -12 223 313 0 0 chr11 63969580 63969644 -84813828 - L2 LINE L2 0 3313 3250 1575 250 11 5 chr11 63970548 63970924 -84812548 + L1P3 LINE L1 8 385 -5490 461 244 16 16 chr11 63970963 63971086 -84812386 + L1P3 LINE L1 552 674 -5201 372 309 72 106 chr11 63971086 63971782 -84811690 - MLT1-int LTR MaLR -5 1366 695 30277 113 12 75 chr11 63971933 63976392 -84807080 + L1PA4 LINE L1 12 4750 -1405 1295 58 6 0 chr11 63976392 63976565 -84806907 + (GGGAA)n Simple_repeat Simple_repeat 4 177 0 30277 113 12 75 chr11 63976565 63977846 -84805626 + L1PA4 LINE L1 4750 5269 -886 2249 113 7 0 chr11 63977846 63978146 -84805326 + AluSp SINE Alu 1 302 -11 30277 113 12 75 chr11 63978146 63978980 -84804492 + L1PA4 LINE L1 5269 6154 -1 16348 102 24 7 chr11 63978975 63981399 -84802073 - L1P LINE L1 -1812 4334 1871 * 234 204 19 0 chr11 63983364 63983418 -84800054 - L1PA4 LINE L1 -41 6114 6060 1657 143 0 6 chr11 63984523 63984795 -84798677 - LOR1-int LTR ERV1 -2175 4423 3921 37293 47 6 2 chr11 63985049 63990431 -84793041 - L1PA4 LINE L1 -4 6151 754 7867 37 6 1 chr11 63991501 63992635 -84790837 + L1PA4 LINE L1 5016 6152 -3 956 173 5 27 chr11 63992639 63993005 -84790467 + AluJb SINE Alu 129 490 0 652 135 0 10 chr11 63993011 63993115 -84790357 + LTR56 LTR ERV1 327 429 -16 637 76 0 0 chr11 63993123 63993202 -84790270 - LOR1b LTR ERV1 -382 79 1 547 156 0 22 chr11 63993210 63993300 -84790172 - LOR1b-int LTR ERV1 -2 8118 8031 1000 131 62 25 chr11 63993301 63993623 -84789849 - LOR1-int LTR ERV1 -2057 6063 4153 3273 210 42 131 chr11 63993625 63995337 -84788135 + L1P3 LINE L1 1 1605 -4734 11255 146 54 37 chr11 63995680 63997798 -84785674 - L1P LINE L1 -3371 2775 623 632 136 0 0 chr11 63997796 63997884 -84785588 - L1P LINE L1 -6048 98 11 * 6512 195 34 11 chr11 63997887 63999370 -84784102 - L1PA13 LINE L1 -3312 3485 1977 43256 55 1 0 chr11 63999371 64005510 -84777962 + L1PA2 LINE L1 1 6144 -11 3253 48 0 3 chr11 64005536 64005935 -84777537 + L1PA4 LINE L1 5769 6166 0 1296 130 24 0 chr11 64005935 64006143 -84777329 - L1PA13 LINE L1 -4801 1986 1774 215 290 90 10 chr11 64006687 64006787 -84776685 - MIR SINE MIR -60 202 95 424 264 28 82 chr11 64006821 64007003 -84776469 - MER69A DNA AcHobo 0 177 6 229 342 36 9 chr11 64007789 64007900 -84775572 - L2 LINE L2 0 3313 3200 207 154 39 0 chr11 64008534 64008586 -84774886 + (TA)n Simple_repeat Simple_repeat 1 54 0 186 43 0 0 chr11 64008720 64008743 -84774729 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2139 31 108 0 chr11 64009528 64009786 -84773686 + L1PA4 LINE L1 5864 6149 -6 246 248 124 19 chr11 64010694 64010799 -84772673 - L1ME3 LINE L1 -2 6160 6045 626 343 45 43 chr11 64010832 64011278 -84772194 + L1 LINE L1 9 455 -5686 663 198 42 9 chr11 64011587 64011799 -84771673 + L1 LINE L1 899 1123 -5011 2016 124 21 3 chr11 64011805 64012095 -84771377 + AluSx SINE Alu 1 295 -17 940 205 0 14 chr11 64012095 64012310 -84771162 + L1 LINE L1 5064 5275 -935 940 132 7 0 chr11 64012310 64012446 -84771026 - AluSc SINE Alu -172 137 1 12772 126 4 34 chr11 64012446 64013471 -84770001 - L1P3 LINE L1 -3213 3248 2319 2401 67 0 17 chr11 64013471 64013769 -84769703 - AluY SINE Alu -18 293 1 12772 126 4 34 chr11 64013769 64014875 -84768597 - L1P3 LINE L1 -4142 2319 1181 1261 83 0 0 chr11 64014896 64015064 -84768408 - L1P3 LINE L1 -6289 172 5 2127 222 139 0 chr11 64015070 64015610 -84767862 - L1 LINE L1 -2248 3898 3284 234 105 0 0 chr11 64015630 64015668 -84767804 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 225 176 66 22 chr11 64015705 64015796 -84767676 + (TTTA)n Simple_repeat Simple_repeat 4 98 0 * 232 110 14 96 chr11 64015728 64015801 -84767671 + (TTTTA)n Simple_repeat Simple_repeat 2 68 0 3560 32 7 2 chr11 64015809 64016221 -84767251 - L1PA4 LINE L1 -5 6150 5737 23 68 0 0 chr11 64016709 64016753 -84766719 + AT_rich Low_complexity Low_complexity 1 44 0 912 276 48 50 chr11 64016769 64017189 -84766283 + L1ME3 LINE L1 5657 6075 -87 2309 125 0 0 chr11 64017193 64017505 -84765967 - AluSx SINE Alu 0 312 1 1111 145 0 47 chr11 64017506 64017699 -84765773 - MLT1C LTR MaLR -281 186 3 3579 124 27 0 chr11 64017888 64018411 -84765061 + L1PA15 LINE L1 5626 6162 -3 232 192 19 0 chr11 64018492 64018544 -84764928 + T-rich Low_complexity Low_complexity 2 54 0 30 27 0 0 chr11 64019284 64019321 -84764151 + AT_rich Low_complexity Low_complexity 1 37 0 1463 63 19 14 chr11 64019465 64019672 -84763800 - LTR14A LTR ERVK 0 344 137 5995 100 6 13 chr11 64019699 64020537 -84762935 - MER11C LTR ERVK -14 1057 226 2087 86 18 0 chr11 64020544 64020823 -84762649 + L1P LINE L1 10 293 -5853 17950 49 3 1 chr11 64020923 64023135 -84760337 - L1P LINE L1 -3442 2704 489 1640 61 5 5 chr11 64023235 64023449 -84760023 + L1P LINE L1 5040 5253 -893 293 47 23 0 chr11 64023518 64023561 -84759911 + (TTA)n Simple_repeat Simple_repeat 3 46 0 7974 31 2 0 chr11 64023562 64024780 -84758692 - L1PA3 LINE L1 -19 6136 4918 224 254 34 17 chr11 64025230 64025289 -84758183 + L2 LINE L2 2997 3056 -257 337 296 45 45 chr11 64025329 64025505 -84757967 - MER5B DNA MER1_type -2 176 1 198 200 124 124 chr11 64025537 64025682 -84757790 + L2 LINE L2 3168 3312 -1 1018 175 0 6 chr11 64025990 64026167 -84757305 + L1 LINE L1 3785 3960 -2186 10379 168 23 25 chr11 64026168 64028219 -84755253 + L1P LINE L1 1147 3193 -2953 39020 62 4 0 chr11 64028221 64029645 -84753827 + L1PA5 LINE L1 1 1418 -4736 458 17 0 0 chr11 64029645 64029703 -84753769 + L1PA4 LINE L1 6095 6152 -3 39020 62 4 0 chr11 64029703 64034404 -84749068 + L1PA5 LINE L1 1418 6150 -4 1514 140 0 0 chr11 64034658 64034901 -84748571 + LOR1-int LTR ERV1 3921 4163 -3957 186 43 0 0 chr11 64035888 64035911 -84747561 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 13002 134 6 5 chr11 64035912 64038830 -84744642 - L1PA8 LINE L1 -19 6153 3229 899 83 0 0 chr11 64038830 64038951 -84744521 - AluYb8 SINE Alu -197 121 1 12593 157 54 10 chr11 64038951 64043292 -84740180 + L1MA3 LINE L1 3177 7724 0 564 321 44 0 chr11 64044165 64044436 -84739036 + L1ME3A LINE L1 5709 5991 -179 * 836 253 75 5 chr11 64044430 64044806 -84738666 - L1M4 LINE L1 -1537 4609 4208 280 115 39 0 chr11 64044800 64044852 -84738620 - L1P4 LINE L1 -459 5707 5654 * 2859 121 69 10 chr11 64045244 64045725 -84737747 - L1PA16 LINE L1 -2 6164 5656 273 282 58 0 chr11 64046615 64046771 -84736701 + MER53 DNA DNA 20 184 -5 * 484 224 14 7 chr11 64046764 64046911 -84736561 + MER53 DNA DNA 11 158 -31 4727 91 84 33 chr11 64046940 64047705 -84735767 - L1PA13 LINE L1 -5 6809 6000 2892 112 33 0 chr11 64047705 64048147 -84735325 + L1PA14 LINE L1 5691 6159 -2 4727 91 84 33 chr11 64048147 64048177 -84735295 - L1PA13 LINE L1 -814 6000 5973 5593 65 0 3 chr11 64048177 64048881 -84734591 - L1PA7 LINE L1 -6 6148 5447 3557 75 16 12 chr11 64048881 64049372 -84734100 - LTR15 LTR ERV1 0 493 1 2695 135 11 2 chr11 64049372 64049809 -84733663 - HERV15 LTR ERV1 -1 8734 8294 * 27931 103 19 18 chr11 64049806 64050950 -84732522 - HERV15 LTR ERV1 -3976 4759 3618 7292 34 0 0 chr11 64050950 64052181 -84731291 - L1PA4 LINE L1 0 6155 4912 27931 103 19 18 chr11 64052181 64055704 -84727768 - HERV15 LTR ERV1 -5117 3618 1 3173 102 16 12 chr11 64055704 64056195 -84727277 - LTR15 LTR ERV1 0 493 1 28140 131 16 63 chr11 64056195 64061917 -84721555 - L1P3 LINE L1 -704 5450 12 9464 161 11 4 chr11 64061929 64063746 -84719726 - L1PA13 LINE L1 -815 5982 4154 3105 185 12 6 chr11 64064345 64065033 -84718439 - L1PA13 LINE L1 -2641 4156 3465 29089 59 24 109 chr11 64065034 64071081 -84712391 - L1PA6 LINE L1 0 6154 623 577 139 0 0 chr11 64071081 64071167 -84712305 - L1PA6 LINE L1 -6050 96 11 5912 197 32 9 chr11 64071179 64072653 -84710819 - L1PA13 LINE L1 -3322 3475 1977 40461 53 1 1 chr11 64072654 64078804 -84704668 + L1PA3 LINE L1 1 6155 0 12866 52 3 3 chr11 64078819 64081708 -84701764 + L1PA4 LINE L1 3254 6142 -13 2941 182 65 68 chr11 64081768 64082229 -84701243 - MER54B LTR ERVL 0 793 333 2992 60 8 8 chr11 64082229 64082628 -84700844 - L1PA7 LINE L1 0 6154 5756 2941 182 65 68 chr11 64082628 64082961 -84700511 - MER54B LTR ERVL -460 333 1 3677 198 61 66 chr11 64082980 64085170 -84698302 - L1MB1 LINE L1 -7 7580 5414 1036 260 79 3 chr11 64085157 64085526 -84697946 - L1MB1 LINE L1 -4166 3400 3004 * 2295 153 28 42 chr11 64085554 64085679 -84697793 - L1MA4 LINE L1 -8 6292 6167 306 0 0 0 chr11 64085679 64085713 -84697759 + (TG)n Simple_repeat Simple_repeat 2 35 0 2295 153 28 42 chr11 64085713 64086083 -84697389 - L1MA4 LINE L1 -133 6167 5804 3165 111 4 38 chr11 64086183 64086704 -84696768 + LTR8 LTR ERV1 189 691 0 393 190 58 33 chr11 64086710 64086831 -84696641 - L1MB1 LINE L1 -7431 134 11 23 33 0 0 chr11 64086919 64086949 -84696523 + AT_rich Low_complexity Low_complexity 1 30 0 1513 107 8 0 chr11 64086956 64087190 -84696282 - L1MA2 LINE L1 0 6304 6069 3716 94 10 7 chr11 64087190 64087772 -84695700 - L1MA2 LINE L1 -80 6224 5641 2369 120 28 8 chr11 64087774 64088131 -84695341 + THE1B LTR MaLR 1 364 0 8372 128 44 43 chr11 64088131 64089922 -84693550 + THE1B-int LTR MaLR 1 1651 0 2322 128 31 14 chr11 64089922 64090280 -84693192 + THE1B LTR MaLR 1 364 0 2480 137 16 1 chr11 64090285 64090994 -84692478 - L1MA2 LINE L1 -666 5638 4922 25326 139 14 65 chr11 64095382 64100718 -84682754 + L1P LINE L1 12 5074 -1072 315 0 0 0 chr11 64100818 64100853 -84682619 + (A)n Simple_repeat Simple_repeat 1 35 0 1713 156 82 56 chr11 64100965 64101343 -84682129 - MLT1B LTR MaLR 0 390 3 491 296 129 5 chr11 64101480 64101666 -84681806 - MIR SINE MIR -13 249 41 930 28 0 0 chr11 64101724 64101832 -84681640 - L1PA3 LINE L1 -3 6152 6045 457 318 56 26 chr11 64102134 64102367 -84681105 - MIR SINE MIR 0 262 23 661 276 254 34 chr11 64103092 64103546 -84679926 + L2 LINE L2 1666 2241 -1073 2240 185 28 5 chr11 64103546 64103968 -84679504 - MSTB1 LTR MaLR 0 432 1 661 276 254 34 chr11 64103968 64104013 -84679459 + L2 LINE L2 2241 2275 -1039 698 323 151 14 chr11 64104026 64104720 -84678752 + L2 LINE L2 2519 3312 -1 389 285 179 8 chr11 64104819 64105065 -84678407 - LTR33A LTR ERVL -113 410 123 2101 192 19 11 chr11 64105120 64105588 -84677884 + MLT2B3 LTR ERVL 1 504 -50 231 154 15 46 chr11 64105596 64105661 -84677811 + (TA)n Simple_repeat Simple_repeat 1 63 0 293 107 18 18 chr11 64105662 64105718 -84677754 + MLT2B3 LTR ERVL 465 520 0 404 256 65 36 chr11 64105922 64106090 -84677382 - L1M4 LINE L1 -1330 4816 4644 2394 73 3 0 chr11 64106169 64106457 -84677015 - AluSp SINE Alu -24 289 1 337 339 8 0 chr11 64106667 64106797 -84676675 - L1ME2 LINE L1 -13 6151 6021 6890 58 29 12 chr11 64106797 64108346 -84675126 - L1PA7 LINE L1 -1 6153 4594 26 0 0 0 chr11 64108414 64108440 -84675032 + AT_rich Low_complexity Low_complexity 1 26 0 4629 166 45 39 chr11 64108441 64109215 -84674257 - L1MA4A LINE L1 -6 7716 6927 2276 113 0 0 chr11 64109215 64109516 -84673956 - AluSx SINE Alu -11 301 1 4629 166 45 39 chr11 64109516 64110249 -84673223 - L1MA4A LINE L1 -795 6927 6200 3179 93 15 0 chr11 64110263 64110724 -84672748 - L1MA1 LINE L1 -4 6298 5831 9817 209 30 3 chr11 64110725 64112771 -84670701 - L1MA4A LINE L1 -5309 2256 155 2086 112 0 14 chr11 64112871 64113165 -84670307 - AluY SINE Alu -21 290 1 5541 153 10 23 chr11 64113167 64115018 -84668454 + L1PA15 LINE L1 4317 6144 -21 21 57 0 0 chr11 64116741 64116776 -84666696 + AT_rich Low_complexity Low_complexity 1 35 0 5922 77 18 1 chr11 64116779 64118462 -84665010 - L1PA14 LINE L1 -3 6158 4504 2380 181 4 0 chr11 64119315 64119780 -84663692 - L1PA14 LINE L1 -1622 4524 4058 369 267 93 98 chr11 64119780 64120016 -84663456 - L1MC4 LINE L1 -1043 6999 6765 726 136 0 0 chr11 64120279 64120389 -84663083 - L1P LINE L1 -1979 4167 4058 4250 176 29 4 chr11 64120420 64121220 -84662252 + MSTB-int LTR MaLR 832 1651 0 2263 184 16 9 chr11 64121220 64121643 -84661829 + MSTB LTR MaLR 1 426 0 10416 192 99 24 chr11 64121643 64124078 -84659394 - L1P LINE L1 -741 5415 2732 1640 178 17 13 chr11 64124078 64124376 -84659096 - AluJo SINE Alu -13 299 1 10416 192 99 24 chr11 64124376 64124752 -84658720 - L1P LINE L1 -3424 2732 2386 4093 92 26 3 chr11 64124768 64125353 -84658119 - L1PA10 LINE L1 -7 6161 5564 7216 74 9 4 chr11 64125517 64126773 -84656699 - L1PA10 LINE L1 -573 5581 4316 14573 84 11 6 chr11 64126777 64127759 -84655713 - L1PA6 LINE L1 -13 6141 5165 7674 80 6 5 chr11 64127759 64128765 -84654707 + LTR13 LTR ERVK 1 1007 0 14573 84 11 6 chr11 64128765 64130611 -84652861 - L1PA6 LINE L1 -989 5165 3303 14852 145 7 19 chr11 64130601 64133229 -84650243 - L1PA6 LINE L1 -3539 2607 11 2007 149 3 10 chr11 64133415 64133724 -84649748 - AluSq SINE Alu -2 311 5 284 358 112 50 chr11 64134061 64134399 -84649073 + L2 LINE L2 2914 3272 0 23 0 0 0 chr11 64134921 64134944 -84648528 + AT_rich Low_complexity Low_complexity 1 23 0 492 226 20 0 chr11 64135039 64135141 -84648331 - MER5B DNA MER1_type 0 178 75 1798 82 25 0 chr11 64135304 64135586 -84647886 + HSMAR1 DNA Mariner 1 289 -998 21 36 0 0 chr11 64135690 64135718 -84647754 + GC_rich Low_complexity Low_complexity 1 28 0 5935 114 14 15 chr11 64135754 64136318 -84647154 + L1PA13 LINE L1 2377 2940 -3223 261 0 0 0 chr11 64136318 64136347 -84647125 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 5935 114 14 15 chr11 64136347 64139518 -84643954 + L1PA13 LINE L1 2940 6163 0 729 260 84 38 chr11 64139518 64139649 -84643823 + L1ME3 LINE L1 5419 5543 -619 7385 34 8 0 chr11 64139649 64140862 -84642610 - L1PA4 LINE L1 -4 6151 4924 729 260 84 38 chr11 64140862 64141298 -84642174 + L1ME3 LINE L1 5543 6095 -67 293 297 108 36 chr11 64141779 64141890 -84641582 - L2 LINE L2 -11 3261 3143 887 35 0 0 chr11 64142225 64142338 -84641134 - L1P3 LINE L1 -422 5732 5620 194 287 210 32 chr11 64142479 64142636 -84640836 + MIR SINE MIR 46 230 -32 25 0 0 0 chr11 64142647 64142672 -84640800 + AT_rich Low_complexity Low_complexity 1 25 0 6642 70 17 9 chr11 64142750 64143748 -84639724 + L1PA8 LINE L1 5167 6164 -8 2874 198 46 12 chr11 64143749 64144044 -84639428 + L1 LINE L1 2758 3041 -3105 1832 157 19 29 chr11 64144044 64144356 -84639116 + AluSx SINE Alu 4 312 0 2874 198 46 12 chr11 64144356 64144838 -84638634 + L1 LINE L1 3041 3562 -2584 705 249 12 6 chr11 64144861 64145030 -84638442 - AluJb SINE Alu -23 289 120 189 0 0 0 chr11 64145030 64145051 -84638421 + (T)n Simple_repeat Simple_repeat 1 21 0 6180 155 33 19 chr11 64145169 64146290 -84637182 - L1P3 LINE L1 -5315 1146 10 222 37 0 0 chr11 64146349 64146376 -84637096 + (TC)n Simple_repeat Simple_repeat 2 28 0 * 306 0 0 0 chr11 64146375 64146409 -84637063 + (TG)n Simple_repeat Simple_repeat 1 34 0 348 221 39 16 chr11 64146530 64146657 -84636815 - L1MA9 LINE L1 -3 6288 6159 240 259 69 30 chr11 64146655 64146786 -84636686 - L1M4 LINE L1 -3171 2975 2840 * 550 141 0 0 chr11 64146823 64146915 -84636557 - L1PA13 LINE L1 -5 6158 6067 3569 117 2 2 chr11 64146916 64147457 -84636015 - L1PA13 LINE L1 -191 5974 5434 188 178 0 22 chr11 64147639 64147684 -84635788 + (CAT)n Simple_repeat Simple_repeat 2 45 0 25 83 0 0 chr11 64148219 64148279 -84635193 + AT_rich Low_complexity Low_complexity 1 60 0 180 239 33 54 chr11 64150914 64151006 -84632466 - L3 LINE CR1 -29 1548 1459 222 386 33 13 chr11 64152073 64152226 -84631246 - MIR SINE MIR -105 157 2 2341 145 10 0 chr11 64153914 64154314 -84629158 + HSMAR2 DNA Mariner 3 406 -896 4688 70 0 3 chr11 64154320 64154948 -84628524 + L1PA6 LINE L1 2 627 -5519 17456 81 0 0 chr11 64155064 64158285 -84625187 + L1PA6 LINE L1 2913 6148 -6 3190 31 0 13 chr11 64158327 64158715 -84624757 - L1PA3 LINE L1 0 6155 5773 186 270 22 79 chr11 64158758 64158847 -84624625 - L2 LINE L2 -626 2688 2605 360 376 44 0 chr11 64158907 64159112 -84624360 - L3 LINE CR1 -27 1550 1337 295 321 192 19 chr11 64159165 64159448 -84624024 + L2 LINE L2 2745 3065 -248 1088 336 15 45 chr11 64159547 64160086 -84623386 - L2 LINE L2 -662 2652 2130 1236 143 14 5 chr11 64160399 64160622 -84622850 + L1MA5A LINE L1 6070 6294 -3 2158 99 0 23 chr11 64160629 64160933 -84622539 + AluSc SINE Alu 1 297 -12 1990 45 0 4 chr11 64161561 64161803 -84621669 + L1PA3 LINE L1 5907 6147 -8 25 51 0 0 chr11 64161803 64161842 -84621630 + AT_rich Low_complexity Low_complexity 1 39 0 1440 146 104 16 chr11 64162139 64162448 -84621024 - L1MC2 LINE L1 -12 6332 5997 2093 25 0 0 chr11 64162986 64163230 -84620242 - L1PA2 LINE L1 -3 6152 5909 2638 24 0 0 chr11 64163232 64163570 -84619902 + L1P LINE L1 5058 5395 -751 29007 35 1 1 chr11 64164308 64168812 -84614660 + L1PA3 LINE L1 1660 6165 0 2362 93 33 38 chr11 64168829 64169195 -84614277 + THE1B LTR MaLR 1 364 0 5052 116 16 57 chr11 64169195 64169594 -84613878 + HSMAR2 DNA Mariner 418 832 -470 2067 144 0 0 chr11 64169594 64169886 -84613586 - AluSg SINE Alu -18 292 1 5052 116 16 57 chr11 64169886 64170409 -84613063 + HSMAR2 DNA Mariner 832 1302 0 382 316 55 76 chr11 64170728 64170965 -84612507 + L1ME LINE L1 5318 5549 -572 909 205 40 16 chr11 64171069 64171318 -84612154 - L1M4 LINE L1 -1924 4222 3968 1810 157 80 0 chr11 64171329 64171693 -84611779 - L1PA16 LINE L1 -3 6163 5771 449 178 27 68 chr11 64171693 64171834 -84611638 - MER39 LTR ERV1 -91 616 482 280 143 0 0 chr11 64172052 64172108 -84611364 - L1PB1 LINE L1 0 6151 6096 * 791 105 0 15 chr11 64172104 64172237 -84611235 + L1PB2 LINE L1 5958 6088 -63 725 149 0 0 chr11 64172232 64172353 -84611119 - L1PA16 LINE L1 -384 5782 5662 * 708 122 35 0 chr11 64172482 64172597 -84610875 - FLAM_C SINE Alu 0 143 25 7894 187 24 6 chr11 64172597 64174296 -84609176 + L1M1 LINE L1 3553 5282 -864 714 150 0 0 chr11 64174294 64174426 -84609046 + L1M1 LINE L1 5523 5654 -649 * 4008 135 16 6 chr11 64174662 64175352 -84608120 + L1MA3 LINE L1 5608 6304 -1 228 317 48 43 chr11 64175538 64175724 -84607748 + MLT1-int LTR MaLR 692 878 -493 275 256 99 73 chr11 64176456 64176647 -84606825 + L2 LINE L2 3118 3313 0 276 291 91 9 chr11 64176771 64176881 -84606591 + L2 LINE L2 3195 3313 0 22 0 0 0 chr11 64176927 64176949 -84606523 + AT_rich Low_complexity Low_complexity 1 22 0 1432 155 106 4 chr11 64177620 64177884 -84605588 - THE1B LTR MaLR 0 364 74 1573 74 14 0 chr11 64177898 64178115 -84605357 - THE1B-int LTR MaLR 0 1580 1361 1663 249 52 29 chr11 64178997 64179551 -84603921 + L1M4 LINE L1 8 574 -5968 2456 143 7 5 chr11 64179552 64179959 -84603513 - Tigger2 DNA MER2_type 0 2718 2311 2947 223 85 18 chr11 64179960 64181081 -84602391 + L1M4 LINE L1 675 1870 -4776 12801 138 20 24 chr11 64181771 64183597 -84599875 + L1P LINE L1 11 1828 -4318 2174 125 0 3 chr11 64183597 64183894 -84599578 - AluSc SINE Alu -13 296 1 12801 138 20 24 chr11 64183894 64184205 -84599267 + L1P LINE L1 1828 2139 -4007 897 117 0 0 chr11 64184217 64184354 -84599118 + (TA)n Simple_repeat Simple_repeat 1 137 0 1591 212 7 3 chr11 64184460 64184767 -84598705 - AluJo SINE Alu -4 308 1 2147 128 29 84 chr11 64184776 64185159 -84598313 - THE1B LTR MaLR 0 364 3 4267 106 5 0 chr11 64185161 64185729 -84597743 - THE1B-int LTR MaLR 0 1580 1010 9902 36 0 0 chr11 64185778 64187677 -84595795 - L1PA3 LINE L1 -4 6151 4253 2734 214 106 10 chr11 64187724 64188424 -84595048 - Cheshire DNA MER1_type -216 2204 1438 760 304 45 20 chr11 64188596 64188829 -84594643 + L1M4 LINE L1 4010 4257 -2387 1746 193 19 43 chr11 64188829 64189203 -84594269 + MLT1A1 LTR MaLR 1 365 0 760 304 45 20 chr11 64189203 64189327 -84594145 + L1M4 LINE L1 4257 4376 -2268 2111 120 0 19 chr11 64189354 64189663 -84593809 - AluSx SINE Alu -9 303 1 1023 70 28 14 chr11 64189687 64189830 -84593642 + L1P4 LINE L1 5473 5617 -549 1123 140 6 0 chr11 64189930 64190094 -84593378 - AluSg/x SINE Alu -8 304 140 1912 158 3 0 chr11 64190413 64190705 -84592767 + AluSx SINE Alu 1 293 -19 25 31 0 0 chr11 64190884 64190916 -84592556 + AT_rich Low_complexity Low_complexity 1 32 0 1560 117 54 4 chr11 64192288 64192527 -84590945 - HSMAR1 DNA Mariner 0 1287 1037 4353 80 37 0 chr11 64192563 64193129 -84590343 - LTR8 LTR ERV1 -104 587 1 7270 69 17 6 chr11 64193129 64194060 -84589412 - HUERS-P1 LTR ERV1 0 6263 5323 5392 79 11 5 chr11 64194053 64194802 -84588670 - HUERS-P1 LTR ERV1 -2128 4135 3383 * 2495 80 0 6 chr11 64194902 64195213 -84588259 - AluY SINE Alu -2 309 1 12273 89 25 4 chr11 64195215 64196859 -84586613 - HUERS-P1 LTR ERV1 -4585 1678 1 1037 89 7 20 chr11 64196859 64197005 -84586467 - LTR8 LTR ERV1 0 691 548 * 7514 104 21 1 chr11 64197004 64198039 -84585433 - HSMAR1 DNA Mariner -230 1057 2 5505 205 34 3 chr11 64198240 64199412 -84584060 + L1P LINE L1 3126 4333 -1813 7710 164 26 24 chr11 64199549 64201064 -84582408 + L1P LINE L1 875 2391 -3755 2656 51 0 0 chr11 64201067 64201378 -84582094 + AluY SINE Alu 1 311 0 10060 76 46 18 chr11 64201488 64202917 -84580555 + HUERS-P1 LTR ERV1 805 3099 -3164 6465 43 3 1 chr11 64203057 64204148 -84579324 - L1P2 LINE L1 -486 5668 4578 333 222 111 0 chr11 64254153 64254234 -84529238 - L1MC4 LINE L1 -1339 6703 6614 13033 136 20 23 chr11 64254261 64254570 -84528902 - L1P LINE L1 -4007 2139 1830 2202 124 0 3 chr11 64254570 64254868 -84528604 + AluSc SINE Alu 1 297 -12 13033 136 20 23 chr11 64254868 64256694 -84526778 - L1P LINE L1 -4316 1830 11 3312 221 85 18 chr11 64257384 64258505 -84524967 - L1M4c LINE L1 -4776 1870 675 2640 143 7 5 chr11 64258506 64258913 -84524559 + Tigger2 DNA MER2_type 2311 2718 0 1862 249 52 29 chr11 64258914 64259468 -84524004 - L1M4c LINE L1 -5968 574 8 2862 26 0 0 chr11 64260876 64261221 -84522251 - L1P LINE L1 -751 5395 5051 2130 25 0 0 chr11 64261221 64261460 -84522012 + L1PA2 LINE L1 5909 6152 -3 1569 150 103 19 chr11 64261960 64262313 -84521159 + L1MC2 LINE L1 5957 6334 0 25 51 0 0 chr11 64262603 64262642 -84520830 + AT_rich Low_complexity Low_complexity 1 39 0 2023 45 0 4 chr11 64262642 64262884 -84520588 - L1PA3 LINE L1 -8 6147 5907 2190 99 0 23 chr11 64263512 64263816 -84519656 - AluSc SINE Alu -12 297 1 1293 143 14 5 chr11 64263823 64264046 -84519426 - L1MA5A LINE L1 -3 6294 6070 913 340 12 43 chr11 64264387 64264898 -84518574 + L2 LINE L2 2158 2652 -662 293 329 73 18 chr11 64264997 64265161 -84518311 - L2 LINE L2 -248 3065 2893 299 325 61 0 chr11 64265424 64265538 -84517934 + L3 LINE CR1 1430 1550 -27 3205 29 5 13 chr11 64265730 64266116 -84517356 + L1PA3 LINE L1 5773 6155 0 7728 81 9 1 chr11 64266158 64267982 -84515490 - L1PA7 LINE L1 -6 6148 4316 15037 84 10 6 chr11 64267986 64268968 -84514504 - L1PA6 LINE L1 -13 6141 5164 7769 80 6 5 chr11 64268968 64269974 -84513498 + LTR13 LTR ERVK 1 1007 0 15037 84 10 6 chr11 64269974 64271822 -84511650 - L1PA6 LINE L1 -990 5164 3303 15938 146 7 19 chr11 64271822 64274441 -84509031 - L1PA6 LINE L1 -3549 2597 11 1999 149 3 10 chr11 64274627 64274936 -84508536 - AluSq SINE Alu -2 311 5 319 237 144 10 chr11 64276941 64277038 -84506434 - MIR SINE MIR -63 145 36 536 211 8 39 chr11 64278258 64278386 -84505086 + LTR16C LTR ERVL 368 491 0 1349 177 34 46 chr11 64278847 64279175 -84504297 + MER33 DNA MER1_type 1 324 0 271 182 91 0 chr11 64279270 64279325 -84504147 - MLT1K LTR MaLR -18 570 511 443 330 74 18 chr11 64279793 64280227 -84503245 - L2 LINE L2 -1220 2094 1637 473 242 52 7 chr11 64282288 64282441 -84501031 - MIR3 SINE MIR -20 188 29 529 223 58 0 chr11 64282775 64282914 -84500558 + MER117 DNA MER1_type 4 150 -47 484 282 115 13 chr11 64283114 64283348 -84500124 + L3 LINE CR1 1098 1355 -222 205 188 35 176 chr11 64285140 64285162 -84498310 - MIR SINE MIR -62 146 123 2067 116 7 3 chr11 64285162 64285464 -84498008 - AluSg SINE Alu -7 303 1 205 188 35 176 chr11 64285464 64285526 -84497946 - MIR SINE MIR -85 123 74 595 288 63 0 chr11 64285641 64285832 -84497640 + MIR SINE MIR 46 248 -14 2197 99 0 0 chr11 64285902 64286194 -84497278 - AluSq SINE Alu -21 292 1 206 261 0 0 chr11 64287200 64287246 -84496226 - MIR SINE MIR -110 152 107 * 416 234 119 22 chr11 64287245 64287441 -84496031 + MIR SINE MIR 34 246 -16 221 292 36 57 chr11 64287455 64287597 -84495875 - MIR SINE MIR -73 135 22 2244 114 0 0 chr11 64288144 64288451 -84495021 + AluSq SINE Alu 1 307 -6 250 167 37 37 chr11 64288492 64288546 -84494926 - MIR SINE MIR -77 131 78 807 308 190 29 chr11 64289056 64289843 -84493629 + L2 LINE L2 1490 2149 -1165 194 0 0 37 chr11 64289851 64289878 -84493594 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 1469 184 53 0 chr11 64289878 64290152 -84493320 - AluJo SINE Alu -20 292 1 807 308 190 29 chr11 64290152 64290183 -84493289 + L2 LINE L2 2149 2174 -1140 1801 154 28 49 chr11 64290183 64290572 -84492900 - L1MA7 LINE L1 -2 6289 5909 807 308 190 29 chr11 64290572 64290721 -84492751 + L2 LINE L2 2174 2614 -700 751 201 26 7 chr11 64290723 64290877 -84492595 - MIR SINE MIR 0 262 106 422 372 44 11 chr11 64290876 64291150 -84492322 + L2 LINE L2 2613 2895 -419 * 587 268 136 48 chr11 64291534 64291888 -84491584 + MLT1J1 LTR MaLR 7 391 -55 1499 270 75 28 chr11 64292234 64292754 -84490718 + L2 LINE L2 2775 3310 -3 362 298 76 15 chr11 64293251 64293382 -84490090 - MIR SINE MIR -76 186 48 1975 186 66 33 chr11 64293398 64293850 -84489622 + MLT1C LTR MaLR 1 467 0 195 196 20 78 chr11 64294323 64294374 -84489098 + L2 LINE L2 3225 3272 0 252 0 0 0 chr11 64294536 64294564 -84488908 + (T)n Simple_repeat Simple_repeat 1 28 0 2124 114 0 13 chr11 64294737 64295043 -84488429 - AluSx SINE Alu -10 302 1 2198 97 10 7 chr11 64295067 64295376 -84488096 + L1PA16 LINE L1 5473 5782 -384 859 105 0 15 chr11 64295371 64295504 -84487968 - L1PB2 LINE L1 -63 6088 5958 * 300 143 0 0 chr11 64295500 64295556 -84487916 + L1PB1 LINE L1 6096 6151 0 * 484 186 28 62 chr11 64295774 64295914 -84487558 + MER39 LTR ERV1 482 617 -86 1838 153 85 0 chr11 64295914 64296279 -84487193 + L1PA16 LINE L1 5768 6163 -3 986 205 40 16 chr11 64296290 64296539 -84486933 + L1M4 LINE L1 3968 4222 -1924 448 313 84 64 chr11 64296603 64296900 -84486572 - L1MC/D LINE L1 -572 5549 5298 5530 116 16 51 chr11 64297199 64297722 -84485750 - HSMAR2 DNA Mariner 0 1302 762 1946 151 0 0 chr11 64297722 64298026 -84485446 + AluSg SINE Alu 1 304 -6 5530 116 16 51 chr11 64298026 64298413 -84485059 - HSMAR2 DNA Mariner -540 762 422 2396 104 27 33 chr11 64298413 64298779 -84484693 - THE1B LTR MaLR 0 364 1 5530 116 16 51 chr11 64298779 64298796 -84484676 - HSMAR2 DNA Mariner -880 422 406 203 59 0 29 chr11 64298796 64298830 -84484642 + (TTTTA)n Simple_repeat Simple_repeat 1 33 0 44339 44 1 3 chr11 64298830 64304970 -84478502 - L1PA3 LINE L1 -24 6131 2 2478 145 10 0 chr11 64304976 64305376 -84478096 - HSMAR2 DNA Mariner -896 406 3 223 386 33 13 chr11 64307066 64307219 -84476253 + MIR SINE MIR 2 157 -105 248 194 60 45 chr11 64311538 64311605 -84471867 + MIR SINE MIR 76 143 -119 258 284 27 0 chr11 64312045 64312119 -84471353 + CT-rich Low_complexity Low_complexity 2 77 0 369 195 26 0 chr11 64312205 64312282 -84471190 - MIR3 SINE MIR -24 184 106 285 183 0 0 chr11 64312490 64312550 -84470922 + (TCCA)n Simple_repeat Simple_repeat 1 60 0 2165 87 3 7 chr11 64313577 64313876 -84469596 - AluSp SINE Alu -15 298 1 456 247 153 35 chr11 64313882 64314052 -84469420 + MIR SINE MIR 46 235 -27 705 216 46 79 chr11 64314665 64314906 -84468566 - MER102b DNA MER1_type 0 341 109 192 260 80 0 chr11 64315060 64315110 -84468362 - L2 LINE L2 -1 3271 3218 386 277 207 5 chr11 64315316 64315529 -84467943 + L2 LINE L2 2967 3222 -91 192 237 26 53 chr11 64315810 64315886 -84467586 + MIR SINE MIR 109 182 -80 494 354 29 33 chr11 64316613 64316853 -84466619 + MIR SINE MIR 19 257 -5 355 212 192 0 chr11 64316870 64316969 -84466503 + L2 LINE L2 3195 3312 -1 * 770 303 155 7 chr11 64316963 64317375 -84466097 + L3 LINE CR1 788 1260 -317 219 247 233 0 chr11 64317365 64317438 -84466034 + MIR SINE MIR 53 142 -120 * 2197 143 51 5 chr11 64317937 64318350 -84465122 + L1MB4 LINE L1 5748 6179 -1 479 242 0 0 chr11 64318394 64318493 -84464979 + MIR SINE MIR 68 166 -96 * 552 270 212 24 chr11 64318480 64319002 -84464470 + L2 LINE L2 2552 3149 -164 1732 178 17 78 chr11 64319129 64319476 -84463996 - MSTD LTR MaLR 0 396 78 2205 103 0 0 chr11 64319476 64319778 -84463694 - AluSq SINE Alu -11 302 1 1732 178 17 78 chr11 64319778 64319852 -84463620 - MSTD LTR MaLR -318 78 1 550 250 133 20 chr11 64319943 64320139 -84463333 + L1MC4 LINE L1 7820 8037 -5 21 0 0 0 chr11 64320191 64320212 -84463260 + AT_rich Low_complexity Low_complexity 1 21 0 2015 128 3 0 chr11 64320486 64320783 -84462689 - AluSx SINE Alu -14 298 1 2516 102 19 16 chr11 64320920 64321283 -84462189 - THE1B LTR MaLR 0 364 1 3292 80 0 2 chr11 64321283 64321698 -84461774 - THE1B-int LTR MaLR 0 1580 1167 408 55 0 0 chr11 64321787 64321842 -84461630 + (TTAGGG)n Simple_repeat Simple_repeat 4 58 0 347 251 110 72 chr11 64321862 64322125 -84461347 - MLT1D LTR MaLR -126 379 107 31 26 0 0 chr11 64322126 64322164 -84461308 + AT_rich Low_complexity Low_complexity 1 38 0 5470 95 7 3 chr11 64322165 64322930 -84460542 - L1PB1 LINE L1 -3 6148 5381 283 283 115 26 chr11 64322930 64323043 -84460429 - MLT1D LTR MaLR -382 123 1 3541 118 22 6 chr11 64323126 64323666 -84459806 + L1PA13 LINE L1 5615 6163 0 1137 254 116 63 chr11 64323941 64324417 -84459055 - MLT1F LTR MaLR -41 501 1 2124 80 3 20 chr11 64324512 64324535 -84458937 + L1MA1 LINE L1 6006 6028 -274 1941 154 45 25 chr11 64324535 64324892 -84458580 + THE1B LTR MaLR 1 364 0 2124 80 3 20 chr11 64324892 64325170 -84458302 + L1MA1 LINE L1 6028 6302 0 1665 167 0 20 chr11 64325178 64325510 -84457962 + AluJb SINE Alu 5 312 0 774 158 8 23 chr11 64325903 64326036 -84457436 - MLT1C LTR MaLR 0 467 337 1374 164 188 0 chr11 64326697 64326995 -84456477 - MLT1C LTR MaLR -113 354 1 2373 68 0 0 chr11 64327628 64327935 -84455537 - AluY SINE Alu -4 307 1 1304 233 22 13 chr11 64328049 64328366 -84455106 + MLT1A1 LTR MaLR 2 321 -44 7913 20 0 0 chr11 64328469 64329951 -84453521 + L1PA3 LINE L1 4671 6152 -3 4413 100 3 0 chr11 64329999 64330568 -84452904 + THE1B-int LTR MaLR 1010 1580 0 2011 128 29 84 chr11 64330570 64330953 -84452519 + THE1B LTR MaLR 3 364 0 1424 222 7 3 chr11 64330962 64331268 -84452204 + AluJo SINE Alu 1 307 -5 4170 92 26 3 chr11 64331323 64331908 -84451564 + L1PA10 LINE L1 5564 6161 -7 10688 190 75 17 chr11 64331924 64332301 -84451171 + L1 LINE L1 2386 2740 -3416 1519 181 17 13 chr11 64332301 64332599 -84450873 + AluJo SINE Alu 1 299 -13 10688 190 75 17 chr11 64332599 64335033 -84448439 + L1 LINE L1 2740 5415 -741 2312 187 17 7 chr11 64335033 64335455 -84448017 - MSTB LTR MaLR 0 426 1 4604 176 29 4 chr11 64335455 64336255 -84447217 - MSTB-int LTR MaLR 0 1651 832 776 136 0 0 chr11 64336286 64336396 -84447076 + L1P LINE L1 4058 4167 -1979 245 244 98 112 chr11 64336663 64336868 -84446604 + L1MC4 LINE L1 6765 6966 -1076 2580 181 4 0 chr11 64336899 64337364 -84446108 + L1PA14 LINE L1 4058 4524 -1622 6078 77 18 55 chr11 64338217 64339900 -84443572 + L1PA14 LINE L1 4504 6158 -3 21 57 0 0 chr11 64339903 64339938 -84443534 + AT_rich Low_complexity Low_complexity 1 35 0 5967 153 10 23 chr11 64341661 64343512 -84439960 - L1PA15 LINE L1 -21 6144 4317 1892 114 11 11 chr11 64343514 64343794 -84439678 + AluY SINE Alu 1 280 -31 373 65 0 0 chr11 64343908 64343954 -84439518 - Alu SINE Alu -256 46 1 374 198 104 21 chr11 64344159 64344255 -84439217 - L2 LINE L2 0 3313 3210 910 235 5 17 chr11 64344489 64344736 -84438736 + MIR SINE MIR 15 257 -5 427 264 24 8 chr11 64344755 64344880 -84438592 + MIR SINE MIR 25 151 -111 300 320 26 29 chr11 64345166 64345363 -84438109 + MIR SINE MIR 57 250 -12 327 287 102 0 chr11 64345847 64345955 -84437517 + L2 LINE L2 3145 3263 -9 25 0 0 0 chr11 64348074 64348099 -84435373 + AT_rich Low_complexity Low_complexity 1 25 0 198 71 0 0 chr11 64348139 64348167 -84435305 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 258 271 127 0 chr11 64348262 64348380 -84435092 - MIR SINE MIR -70 192 60 2148 116 3 10 chr11 64348493 64348794 -84434678 + AluSg SINE Alu 3 301 -9 200 298 76 71 chr11 64348835 64349241 -84434231 - L2 LINE L2 -452 2862 2455 757 264 59 0 chr11 64349403 64349623 -84433849 - MIR SINE MIR -10 252 20 210 298 181 0 chr11 64349716 64349810 -84433662 + L2 LINE L2 3160 3270 -2 232 217 50 0 chr11 64350889 64350949 -84432523 + MIR SINE MIR 85 147 -115 2782 111 5 9 chr11 64351426 64351867 -84431605 - L1P LINE L1 -2454 3692 3254 29665 117 10 27 chr11 64351882 64358031 -84425441 - L1PA3 LINE L1 0 6470 296 188 178 0 22 chr11 64358621 64358666 -84424806 + (ATG)n Simple_repeat Simple_repeat 2 45 0 3826 170 16 9 chr11 64358848 64359391 -84424081 + L1PA15 LINE L1 5434 5999 -292 573 141 0 0 chr11 64359391 64359482 -84423990 + L1PA13 LINE L1 6067 6158 -5 3826 170 16 9 chr11 64359482 64359775 -84423697 + L1PA15 LINE L1 5999 6288 -3 255 242 108 67 chr11 64359753 64359896 -84423576 + L1M4 LINE L1 2950 3086 -3060 * 306 0 0 0 chr11 64359896 64359930 -84423542 + (CA)n Simple_repeat Simple_repeat 1 34 0 222 37 0 0 chr11 64359929 64359956 -84423516 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 255 242 108 67 chr11 64359930 64360006 -84423466 + L1M4 LINE L1 3086 3151 -2995 10695 150 28 59 chr11 64360006 64362668 -84420804 + L1P3 LINE L1 10 2706 -3755 2628 52 0 0 chr11 64362671 64362976 -84420496 + AluY SINE Alu 1 305 -6 287 161 18 18 chr11 64363081 64363137 -84420335 + MLT1A1 LTR MaLR 309 364 -1 533 342 30 4 chr11 64363137 64363368 -84420104 + L2 LINE L2 2513 2749 -565 2011 138 7 3 chr11 64363428 64363724 -84419748 - AluSx SINE Alu -15 297 1 257 290 140 0 chr11 64363777 64363877 -84419595 + L2 LINE L2 3183 3296 -17 575 200 131 80 chr11 64364454 64364629 -84418843 - MLT1J LTR MaLR -326 185 2 24523 44 11 0 chr11 64364636 64368425 -84415047 - L1PA5 LINE L1 0 6154 2331 2040 128 30 0 chr11 64368525 64368821 -84414651 - AluSc SINE Alu -4 305 1 12671 127 4 34 chr11 64368821 64369846 -84413626 - L1P3 LINE L1 -3213 3248 2319 2429 67 0 17 chr11 64369846 64370144 -84413328 - AluY SINE Alu -18 293 1 12671 127 4 34 chr11 64370144 64371250 -84412222 - L1P3 LINE L1 -4142 2319 1181 1280 83 0 0 chr11 64371271 64371439 -84412033 - L1P3 LINE L1 -6289 172 5 1818 249 137 2 chr11 64371445 64371992 -84411480 - L1P LINE L1 -2248 3898 3278 234 105 0 0 chr11 64372005 64372043 -84411429 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 207 31 47 78 chr11 64372105 64372169 -84411303 + (TTTTA)n Simple_repeat Simple_repeat 2 63 0 2418 38 3 0 chr11 64372186 64372474 -84410998 - L1PA5 LINE L1 -5 6149 5861 1381 112 31 5 chr11 64372583 64372779 -84410693 - AluSq SINE Alu -112 201 1 654 259 94 0 chr11 64372785 64372997 -84410475 - L1M3c LINE L1 -5011 1130 899 629 337 47 43 chr11 64373306 64373751 -84409721 - L1M3c LINE L1 -5686 455 9 235 248 124 19 chr11 64373784 64373889 -84409583 + L1ME3 LINE L1 6045 6160 -2 2033 31 108 0 chr11 64374797 64375055 -84408417 - L1PA4 LINE L1 -6 6149 5864 23 0 0 0 chr11 64376025 64376048 -84407424 + AT_rich Low_complexity Low_complexity 1 23 0 456 226 20 0 chr11 64376143 64376245 -84407227 - MER5B DNA MER1_type 0 178 75 7882 103 11 1 chr11 64376408 64377455 -84406017 + HSMAR1 DNA Mariner 1 1057 -230 1041 89 7 20 chr11 64377454 64377600 -84405872 + LTR8 LTR ERV1 548 691 0 * 28901 78 27 49 chr11 64377600 64379246 -84404226 + HUERS-P1 LTR ERV1 1 1683 -4580 2215 78 0 7 chr11 64379246 64379516 -84403956 + AluY SINE Alu 1 268 -43 28901 78 27 49 chr11 64379516 64381051 -84402421 + HUERS-P1 LTR ERV1 1683 3066 -3197 2393 104 0 7 chr11 64381051 64381360 -84402112 - AluSc SINE Alu 0 309 3 28901 78 27 49 chr11 64381360 64382407 -84401065 + HUERS-P1 LTR ERV1 3066 4135 -2128 7246 69 17 6 chr11 64382400 64383331 -84400141 + HUERS-P1 LTR ERV1 5323 6263 0 * 4367 80 37 0 chr11 64383331 64383897 -84399575 + LTR8 LTR ERV1 1 587 -104 1540 117 54 4 chr11 64383933 64384172 -84399300 + HSMAR1 DNA Mariner 1037 1287 0 25 31 0 0 chr11 64385544 64385576 -84397896 + AT_rich Low_complexity Low_complexity 1 32 0 1931 158 3 0 chr11 64385755 64386047 -84397425 - AluSx SINE Alu -19 293 1 1216 128 6 0 chr11 64386365 64386537 -84396935 + AluSg/x SINE Alu 138 310 0 22 0 0 0 chr11 64386707 64386729 -84396743 + GC_rich Low_complexity Low_complexity 1 22 0 315 0 0 0 chr11 64386751 64386786 -84396686 + (A)n Simple_repeat Simple_repeat 1 35 0 1713 156 82 56 chr11 64386898 64387276 -84396196 - MLT1B LTR MaLR 0 390 3 491 296 129 5 chr11 64387413 64387599 -84395873 - MIR SINE MIR -13 249 41 930 28 0 0 chr11 64387657 64387765 -84395707 - L1PA3 LINE L1 -3 6152 6045 457 318 56 26 chr11 64388066 64388299 -84395173 - MIR SINE MIR 0 262 23 661 276 254 34 chr11 64389023 64389477 -84393995 + L2 LINE L2 1666 2241 -1073 2240 185 28 5 chr11 64389477 64389899 -84393573 - MSTB1 LTR MaLR 0 432 1 661 276 254 34 chr11 64389899 64389944 -84393528 + L2 LINE L2 2241 2275 -1039 698 323 151 14 chr11 64389957 64390651 -84392821 + L2 LINE L2 2519 3312 -1 389 285 179 8 chr11 64390750 64390996 -84392476 - LTR33A LTR ERVL -113 410 123 2101 192 19 11 chr11 64391051 64391519 -84391953 + MLT2B3 LTR ERVL 1 504 -50 231 154 15 46 chr11 64391527 64391592 -84391880 + (TA)n Simple_repeat Simple_repeat 2 64 0 293 107 18 18 chr11 64391593 64391649 -84391823 + MLT2B3 LTR ERVL 465 520 0 404 256 65 36 chr11 64391853 64392021 -84391451 - L1M4 LINE L1 -1330 4816 4644 2394 73 3 0 chr11 64392100 64392388 -84391084 - AluSp SINE Alu -24 289 1 241 331 8 0 chr11 64392598 64392728 -84390744 - L1ME2 LINE L1 -13 6151 6021 7010 57 29 12 chr11 64392728 64394274 -84389198 - L1PA7 LINE L1 -1 6153 4594 26 0 0 0 chr11 64394342 64394368 -84389104 + AT_rich Low_complexity Low_complexity 1 26 0 4629 166 45 39 chr11 64394369 64395143 -84388329 - L1MA4A LINE L1 -6 7716 6927 2276 113 0 0 chr11 64395143 64395444 -84388028 - AluSx SINE Alu -11 301 1 4629 166 45 39 chr11 64395444 64396177 -84387295 - L1MA4A LINE L1 -795 6927 6200 3179 93 15 0 chr11 64396191 64396652 -84386820 - L1MA1 LINE L1 -4 6298 5831 9937 209 30 2 chr11 64396653 64398716 -84384756 - L1MA4A LINE L1 -5309 2256 137 4011 125 6 34 chr11 64398716 64399390 -84384082 + LTR8 LTR ERV1 1 655 -36 1049 59 0 0 chr11 64399490 64399625 -84383847 + L1PA4 LINE L1 6017 6151 -4 228 299 28 0 chr11 64399649 64399756 -84383716 - L1ME LINE L1 -642 5528 5419 5935 114 16 15 chr11 64399756 64402927 -84380545 - L1PA13 LINE L1 0 6163 2939 261 0 0 0 chr11 64402927 64402956 -84380516 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 5935 114 16 15 chr11 64402956 64403520 -84379952 - L1PA13 LINE L1 -3224 2939 2377 3236 177 63 64 chr11 64403627 64404054 -84379418 - MER54B LTR ERVL -33 760 333 2780 83 15 8 chr11 64404054 64404450 -84379022 - L1PA7 LINE L1 0 6154 5756 3236 177 63 64 chr11 64404450 64404783 -84378689 - MER54B LTR ERVL -460 333 1 3677 198 61 66 chr11 64404802 64406992 -84376480 - L1MB1 LINE L1 -7 6863 4697 1036 260 79 3 chr11 64406979 64407348 -84376124 - L1MB1 LINE L1 -4166 2683 2287 * 2374 150 28 42 chr11 64407376 64407501 -84375971 - L1MA4 LINE L1 -8 6292 6167 306 0 0 0 chr11 64407501 64407535 -84375937 + (TG)n Simple_repeat Simple_repeat 2 35 0 2374 150 28 42 chr11 64407535 64407915 -84375557 - L1MA4 LINE L1 -133 6167 5794 207 154 39 0 chr11 64408090 64408142 -84375330 + (TA)n Simple_repeat Simple_repeat 1 54 0 242 342 36 9 chr11 64408776 64408887 -84374585 + L2 LINE L2 3200 3313 0 361 243 29 87 chr11 64409673 64409846 -84373626 + MER69A DNA AcHobo 6 168 -9 225 290 90 10 chr11 64409889 64409989 -84373483 + MIR SINE MIR 95 202 -60 4966 205 34 3 chr11 64410671 64411841 -84371631 - L1P LINE L1 -1815 4331 3126 8754 36 2 1 chr11 64412479 64414005 -84369467 - L1P2 LINE L1 -375 5779 4253 2417 216 106 10 chr11 64414052 64414752 -84368720 - Cheshire DNA MER1_type -216 2204 1438 571 300 52 21 chr11 64414927 64415157 -84368315 + L1M4 LINE L1 3515 3759 -2387 1584 193 19 43 chr11 64415157 64415531 -84367941 + MLT1A1 LTR MaLR 1 365 0 571 300 52 21 chr11 64415531 64415630 -84367842 + L1M4 LINE L1 3759 3854 -2292 2246 129 0 3 chr11 64415756 64416066 -84367406 - AluSg SINE Alu -1 309 1 2119 98 0 4 chr11 64416512 64416786 -84366686 - AluSx SINE Alu -39 273 1 502 312 51 6 chr11 64416973 64417130 -84366342 - MIR SINE MIR -83 179 16 486 279 81 11 chr11 64417592 64417814 -84365658 + MIR SINE MIR 5 245 -17 15711 82 2 0 chr11 64418537 64420720 -84362752 - L1P LINE L1 -3852 2294 107 23 33 0 0 chr11 64420943 64420973 -84362499 + AT_rich Low_complexity Low_complexity 1 30 0 1513 107 8 0 chr11 64420980 64421214 -84362258 - L1MA2 LINE L1 0 6304 6069 3716 94 10 7 chr11 64421214 64421796 -84361676 - L1MA2 LINE L1 -80 6224 5641 2369 120 28 8 chr11 64421798 64422155 -84361317 + THE1B LTR MaLR 1 364 0 8372 128 44 43 chr11 64422155 64423946 -84359526 + THE1B-int LTR MaLR 1 1651 0 607 98 11 22 chr11 64423946 64424038 -84359434 + THE1B LTR MaLR 1 91 -273 1364 135 48 13 chr11 64424379 64424609 -84358863 + THE1B LTR MaLR 127 364 0 2480 137 16 1 chr11 64424614 64425323 -84358149 - L1MA2 LINE L1 -666 5638 4922 468 99 0 0 chr11 64429709 64429780 -84353692 + L1P3 LINE L1 5 75 -6386 1753 108 12 8 chr11 64429880 64430129 -84353343 - AluY SINE Alu -32 279 30 464 91 0 0 chr11 64430132 64430198 -84353274 + L1P3 LINE L1 2440 2505 -3956 1148 93 5 0 chr11 64430198 64430391 -84353081 + L1P3 LINE L1 3388 3581 -2880 * 10318 31 1 0 chr11 64430389 64431708 -84351764 + L1P LINE L1 2500 3819 -2327 905 101 8 0 chr11 64431808 64431927 -84351545 - AluSq/x SINE Alu -193 120 1 1531 202 17 3 chr11 64431934 64432221 -84351251 - AluJb SINE Alu -21 291 1 812 259 25 15 chr11 64432461 64432658 -84350814 + MIR SINE MIR 21 219 -43 1169 171 23 18 chr11 64432776 64432993 -84350479 + MER20 DNA MER1_type 1 218 -1 1225 119 51 6 chr11 64433011 64433187 -84350285 + AluSg SINE Alu 1 184 -126 8694 27 4 0 chr11 64433290 64434383 -84349089 + L1P LINE L1 4014 5110 -1036 9990 88 9 2 chr11 64434483 64435986 -84347486 - L1P LINE L1 -1731 4415 2903 1946 77 0 23 chr11 64436092 64436352 -84347120 - AluSx SINE Alu -58 254 1 181 0 0 0 chr11 64436364 64436384 -84347088 + (TTTTA)n Simple_repeat Simple_repeat 4 80 0 2189 83 0 0 chr11 64436384 64436674 -84346798 - AluY SINE Alu -22 289 1 281 185 148 0 chr11 64436674 64436755 -84346717 - MIR SINE MIR -62 200 108 386 164 0 6 chr11 64438314 64438390 -84345082 - MIR SINE MIR -89 119 46 232 217 54 54 chr11 64438834 64438926 -84344546 - MIR SINE MIR -14 248 157 913 238 69 0 chr11 64439079 64439302 -84344170 - MIR SINE MIR -1 261 23 242 29 29 0 chr11 64439827 64439862 -84343610 + (GGAA)n Simple_repeat Simple_repeat 3 38 0 198 344 78 0 chr11 64440277 64440367 -84343105 - L2 LINE L2 -38 3275 3179 207 321 49 12 chr11 64440716 64440797 -84342675 + MIR3 SINE MIR 75 158 -50 23 0 0 0 chr11 64440837 64440860 -84342612 + AT_rich Low_complexity Low_complexity 1 23 0 334 212 35 44 chr11 64440880 64440993 -84342479 + MER103 DNA DNA 43 154 -12 223 114 227 0 chr11 64442051 64442095 -84341377 - MIR SINE MIR -65 143 90 1406 195 175 153 chr11 64442249 64442406 -84341066 + L2 LINE L2 1978 2130 -1184 2244 88 0 3 chr11 64442406 64442700 -84340772 - AluSx SINE Alu -16 296 4 1406 195 175 153 chr11 64442700 64443507 -84339965 + L2 LINE L2 2130 2963 -351 850 142 117 0 chr11 64443690 64443852 -84339620 + MER96B DNA MER1_type? 1 181 -236 1839 102 3 56 chr11 64443852 64444156 -84339316 + AluSg SINE Alu 1 288 -22 2300 75 0 0 chr11 64444405 64444698 -84338774 - AluY SINE Alu -18 293 1 345 24 0 0 chr11 64446145 64446187 -84337285 + (TG)n Simple_repeat Simple_repeat 2 43 0 200 183 117 50 chr11 64446231 64446291 -84337181 + MIR SINE MIR 114 177 -85 915 127 25 19 chr11 64446292 64446450 -84337022 - L1MC2 LINE L1 -242 6102 5944 453 131 0 0 chr11 64446440 64446524 -84336948 - L1M4 LINE L1 -1738 4408 4325 * 2202 108 0 0 chr11 64446524 64446821 -84336651 - AluSx SINE Alu -15 297 1 2043 135 0 0 chr11 64446825 64447129 -84336343 - AluSx SINE Alu -8 304 1 357 144 67 44 chr11 64447536 64447608 -84335864 + MER96B DNA MER1_type? 52 125 -292 243 250 156 0 chr11 64447608 64447672 -84335800 + MER58A DNA MER1_type 4 77 -30 392 276 48 9 chr11 64447673 64447778 -84335694 + MIR SINE MIR 43 151 -111 2389 56 3 10 chr11 64447778 64448084 -84335388 + AluY SINE Alu 1 304 -7 441 76 0 63 chr11 64448095 64448174 -84335298 + AluSc SINE Alu 217 290 -19 5129 30 3 0 chr11 64448276 64449195 -84334277 - L1PA4 LINE L1 -309 5846 4924 828 255 95 20 chr11 64449188 64449631 -84333841 + L1ME3 LINE L1 5537 6095 -67 * 280 297 108 36 chr11 64450112 64450223 -84333249 - L2 LINE L2 -11 3261 3143 942 35 0 0 chr11 64450558 64450671 -84332801 - L1P3 LINE L1 -422 5732 5620 198 287 210 32 chr11 64450812 64450969 -84332503 + MIR SINE MIR 46 230 -32 25 0 0 0 chr11 64450980 64451005 -84332467 + AT_rich Low_complexity Low_complexity 1 25 0 6733 70 16 13 chr11 64451083 64452091 -84331381 + L1PA8 LINE L1 5167 6170 -2 2905 193 47 15 chr11 64452093 64452377 -84331095 + L1M1 LINE L1 2770 3043 -3103 1706 157 19 29 chr11 64452377 64452689 -84330783 + AluSx SINE Alu 4 312 0 2905 193 47 15 chr11 64452689 64453125 -84330347 + L1M1 LINE L1 3043 3513 -2633 3288 178 26 11 chr11 64453227 64453884 -84329588 + L1M1 LINE L1 4616 5282 -864 760 150 0 0 chr11 64453882 64454014 -84329458 + L1M1 LINE L1 5523 5654 -649 * 4078 135 16 6 chr11 64454250 64454940 -84328532 + L1MA3 LINE L1 5608 6304 -1 276 312 58 53 chr11 64455126 64455315 -84328157 + MLT1-int LTR MaLR 692 881 -490 307 273 87 121 chr11 64455464 64455845 -84327627 + MLT1-int LTR MaLR 998 1365 -6 274 260 98 73 chr11 64456031 64456235 -84327237 + L2 LINE L2 3105 3313 0 265 291 91 9 chr11 64456359 64456469 -84327003 + L2 LINE L2 3195 3313 0 22 0 0 0 chr11 64456515 64456537 -84326935 + AT_rich Low_complexity Low_complexity 1 22 0 1459 167 110 4 chr11 64457208 64457471 -84326001 - THE1B LTR MaLR 0 364 74 7525 131 33 3 chr11 64457485 64458619 -84324853 - THE1B-int LTR MaLR 0 1580 414 12141 50 0 2 chr11 64458627 64460891 -84322581 - L1PA4 LINE L1 -3 6152 3888 645 125 21 0 chr11 64460992 64461088 -84322384 - AluS SINE Alu -213 99 2 2306 61 3 3 chr11 64461114 64461411 -84322061 + AluSq SINE Alu 4 300 -13 1427 248 29 74 chr11 64461418 64461643 -84321829 - L2 LINE L2 -540 2774 2540 2471 122 5 19 chr11 64461643 64462012 -84321460 - THE1B LTR MaLR 0 364 1 1427 248 29 74 chr11 64462012 64462342 -84321130 - L2 LINE L2 -774 2540 2244 199 298 85 21 chr11 64462320 64462414 -84321058 - MIR SINE MIR -141 121 22 * 264 368 0 0 chr11 64462809 64462896 -84320576 - MIR SINE MIR -91 117 31 1516 136 121 0 chr11 64463307 64463571 -84319901 + 7SLRNA srpRNA srpRNA 20 315 -5 435 224 9 0 chr11 64463657 64463764 -84319708 + L1M4 LINE L1 4220 4327 -1819 1934 97 29 11 chr11 64463765 64464044 -84319428 + AluSx SINE Alu 1 284 -28 706 271 32 37 chr11 64464116 64464484 -84318988 + L1ME LINE L1 1367 1888 -4647 * 3553 206 35 22 chr11 64464473 64464996 -84318476 + L1ME LINE L1 3709 4251 -2131 777 174 0 0 chr11 64464996 64465117 -84318355 + FLAM_A SINE Alu 1 121 -12 3553 206 35 22 chr11 64465117 64465503 -84317969 + L1ME LINE L1 4251 4630 -1752 498 316 4 62 chr11 64465503 64465728 -84317744 + MER93a LTR ERV1 1 212 -190 832 168 0 0 chr11 64465734 64465865 -84317607 + AluJb SINE Alu 2 132 -180 426 224 17 17 chr11 64465889 64466054 -84317418 + MER57A LTR ERV1 238 403 0 3587 217 46 16 chr11 64466054 64467116 -84316356 + L1ME LINE L1 4627 5729 -673 2097 125 0 7 chr11 64467116 64467420 -84316052 + AluSx SINE Alu 1 302 -10 3587 217 46 16 chr11 64467420 64467520 -84315952 + L1ME LINE L1 5729 5825 -577 435 179 284 0 chr11 64467537 64467632 -84315840 + FLAM_C SINE Alu 6 127 -16 792 182 0 0 chr11 64467649 64467781 -84315691 - FLAM_C SINE Alu 0 133 2 394 127 14 14 chr11 64467782 64467853 -84315619 + L1ME LINE L1 5811 5881 -521 642 198 0 0 chr11 64467927 64468048 -84315424 + L1MA10 LINE L1 6168 6288 -46 978 167 0 6 chr11 64468054 64468228 -84315244 + AluJo SINE Alu 88 260 -52 285 76 10 69 chr11 64468328 64468382 -84315090 + FLAM_A SINE Alu 85 125 -8 * 1137 138 42 11 chr11 64468379 64468568 -84314904 - THE1B LTR MaLR -169 195 1 404 149 27 40 chr11 64468633 64468696 -84314776 - AluJo SINE Alu -10 292 231 1921 162 13 0 chr11 64468696 64469010 -84314462 + MER50 LTR ERV1 1 318 -416 1321 183 32 8 chr11 64469000 64469246 -84314226 + MER50 LTR ERV1 434 685 -49 * 1292 187 0 17 chr11 64469251 64469486 -84313986 - AluJo SINE Alu -81 231 1 2029 118 3 3 chr11 64469713 64470010 -84313462 - AluSq SINE Alu -16 297 1 2453 52 0 13 chr11 64470766 64471076 -84312396 - AluY SINE Alu -5 306 1 1244 164 42 48 chr11 64471136 64471446 -84312026 + LTR5 LTR ERVK 648 955 -14 1822 107 19 57 chr11 64471586 64471819 -84311653 - AluSq SINE Alu -8 305 86 7957 48 11 0 chr11 64471819 64472777 -84310695 + LTR5 LTR ERVK 1 969 0 1822 107 19 57 chr11 64472777 64472860 -84310612 - AluSq SINE Alu -227 86 1 392 268 92 0 chr11 64472860 64473002 -84310470 + Charlie8 DNA MER1_type 77 231 -2186 184 287 113 17 chr11 64473081 64473196 -84310276 + L2 LINE L2 2536 2661 -653 198 0 0 0 chr11 64473380 64473402 -84310070 + (A)n Simple_repeat Simple_repeat 1 22 0 1773 99 4 0 chr11 64473977 64474220 -84309252 - AluSq SINE Alu -16 297 54 1777 150 3 26 chr11 64474244 64474550 -84308922 - AluSx SINE Alu -13 299 1 563 253 11 40 chr11 64474556 64474730 -84308742 + U2 snRNA snRNA 15 183 -5 2184 104 13 0 chr11 64474839 64475146 -84308326 - AluSq SINE Alu -2 311 1 1920 122 0 10 chr11 64475478 64475772 -84307700 + AluSx SINE Alu 1 291 -21 2312 82 3 13 chr11 64475877 64476012 -84307460 + AluSx SINE Alu 1 136 -176 2332 73 0 10 chr11 64476012 64476312 -84307160 + AluY SINE Alu 1 297 -14 2312 82 3 13 chr11 64476312 64476491 -84306981 + AluSx SINE Alu 136 312 0 21 0 0 0 chr11 64476552 64476573 -84306899 + GC_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr11 64476624 64476648 -84306824 + AT_rich Low_complexity Low_complexity 1 24 0 222 91 0 0 chr11 64476903 64476936 -84306536 + (TG)n Simple_repeat Simple_repeat 2 34 0 344 263 33 26 chr11 64477565 64477835 -84305637 + L1M4 LINE L1 3126 3397 -2749 890 188 5 45 chr11 64477849 64478072 -84305400 - L1MB8 LINE L1 0 6178 5965 269 130 0 0 chr11 64478072 64478118 -84305354 - AluSp/q SINE Alu -9 294 249 231 222 0 123 chr11 64478832 64478853 -84304619 + MIR SINE MIR 30 52 -156 1849 141 7 23 chr11 64478853 64479158 -84304314 - AluSx SINE Alu -12 300 1 231 222 0 123 chr11 64479158 64479217 -84304255 + MIR SINE MIR 52 100 -108 813 165 18 3 chr11 64479406 64479644 -84303828 - AluJb SINE Alu 0 312 2 1714 91 0 0 chr11 64479852 64480072 -84303400 + AluSq SINE Alu 1 220 -93 1106 131 0 84 chr11 64480220 64480434 -84303038 + AluJb SINE Alu 1 196 -116 824 201 13 47 chr11 64480558 64480792 -84302680 + L1MB8 LINE L1 5953 6178 0 316 269 53 23 chr11 64480806 64481070 -84302402 - L1MDa LINE L1 -2749 3791 3520 200 266 125 0 chr11 64481084 64481148 -84302324 - MIR SINE MIR -178 84 13 342 279 38 66 chr11 64481155 64481312 -84302160 - L1MDa LINE L1 -3774 2766 2606 1964 88 7 26 chr11 64481312 64481619 -84301853 - AluY SINE Alu -10 301 1 342 279 38 66 chr11 64481619 64481793 -84301679 - L1MDa LINE L1 -3934 2606 2444 1936 139 7 0 chr11 64482583 64482877 -84300595 - AluSx SINE Alu -16 296 1 1257 181 4 25 chr11 64482912 64483149 -84300323 + AluSx SINE Alu 1 232 -80 391 282 163 55 chr11 64483445 64483543 -84299929 + L1ME LINE L1 5136 5222 -948 1881 153 0 0 chr11 64483543 64483844 -84299628 - AluJb SINE Alu -6 306 6 391 282 163 55 chr11 64483844 64483983 -84299489 + L1ME LINE L1 5222 5345 -825 2313 94 0 0 chr11 64483983 64484291 -84299181 + AluSc SINE Alu 1 308 -1 391 282 163 55 chr11 64484291 64484457 -84299015 + L1ME LINE L1 5345 5492 -678 354 61 0 0 chr11 64484457 64484506 -84298966 + (CA)n Simple_repeat Simple_repeat 1 49 0 391 282 163 55 chr11 64484506 64484667 -84298805 + L1ME LINE L1 5492 5781 -389 674 291 41 22 chr11 64484811 64485082 -84298390 - MLT1L LTR MaLR -9 606 331 2172 93 10 0 chr11 64485273 64485564 -84297908 - AluSq SINE Alu -19 294 1 593 175 0 10 chr11 64486005 64486108 -84297364 - MLT1D LTR MaLR -2 503 402 1004 96 0 0 chr11 64486117 64486252 -84297220 + AluSq/x SINE Alu 1 135 -177 1957 130 23 0 chr11 64486252 64486553 -84296919 + AluSx SINE Alu 1 308 -4 1157 174 0 15 chr11 64486668 64486863 -84296609 - AluJb SINE Alu -118 194 3 2496 57 3 3 chr11 64486892 64487190 -84296282 + AluY SINE Alu 2 299 -12 1584 94 0 27 chr11 64487209 64487432 -84296040 + AluSc SINE Alu 78 294 -15 936 171 28 42 chr11 64487432 64487694 -84295778 - AluJo SINE Alu -92 220 1 949 175 5 40 chr11 64487712 64487912 -84295560 - AluJo SINE Alu 0 312 120 348 298 34 64 chr11 64488027 64488292 -84295180 - L1M4 LINE L1 -1314 4832 4576 2407 103 0 0 chr11 64488292 64488593 -84294879 + AluSx SINE Alu 1 301 -11 833 150 0 0 chr11 64488599 64488732 -84294740 + L1PA15 LINE L1 6032 6164 -1 2646 154 57 4 chr11 64488732 64489238 -84294234 + L1MB7 LINE L1 5443 5975 -209 2255 83 7 0 chr11 64489238 64489516 -84293956 + AluSq SINE Alu 1 280 -33 2324 92 3 19 chr11 64489685 64489999 -84293473 - AluSg SINE Alu -1 309 1 253 229 66 0 chr11 64490036 64490097 -84293375 + MER5A DNA MER1_type 52 116 -73 2163 93 7 42 chr11 64490110 64490420 -84293052 - AluSg SINE Alu -11 299 1 201 354 24 0 chr11 64490451 64490533 -84292939 + L2 LINE L2 700 783 -2531 2362 109 0 0 chr11 64491033 64491345 -84292127 + AluSx SINE Alu 1 312 0 1565 157 65 8 chr11 64491357 64491618 -84291854 - AluJo SINE Alu -36 276 1 180 0 0 0 chr11 64492047 64492067 -84291405 + (T)n Simple_repeat Simple_repeat 1 20 0 3361 171 77 46 chr11 64492353 64492419 -84291053 - L1ME2 LINE L1 -9 6155 6093 2082 112 0 0 chr11 64492419 64492696 -84290776 - AluSx SINE Alu -15 297 21 3361 171 77 46 chr11 64492696 64492948 -84290524 - L1ME2 LINE L1 -71 6093 5850 2407 79 0 0 chr11 64492948 64493240 -84290232 - AluSc SINE Alu -17 292 1 3361 171 77 46 chr11 64493240 64493787 -84289685 - L1ME2 LINE L1 -314 5850 5262 597 314 93 14 chr11 64493783 64493956 -84289516 - L1MEc LINE L1 -5995 401 196 * 552 103 0 0 chr11 64493956 64494034 -84289438 - MADE1 DNA Mariner -2 78 1 597 314 93 14 chr11 64494034 64494140 -84289332 - L1MEc LINE L1 -6200 196 100 2199 96 3 45 chr11 64494146 64494460 -84289012 - AluSg SINE Alu -9 301 1 838 150 8 0 chr11 64494870 64494997 -84288475 - AluJb SINE Alu -18 294 167 4300 125 1 25 chr11 64494997 64495647 -84287825 - MER41B LTR ERV1 0 635 1 1720 232 136 43 chr11 64495827 64496473 -84286999 + L1MEc LINE L1 39 744 -5652 2031 100 3 31 chr11 64496473 64496797 -84286675 + AluSx SINE Alu 1 316 0 207 0 0 0 chr11 64496797 64496820 -84286652 + (TTA)n Simple_repeat Simple_repeat 1 23 0 669 197 0 0 chr11 64496820 64496942 -84286530 + FLAM_C SINE Alu 22 143 0 434 301 96 0 chr11 64496950 64497116 -84286356 + L1ME LINE L1 4744 4925 -1221 2243 95 0 33 chr11 64497175 64497511 -84285961 + AluSc SINE Alu 1 309 0 2070 98 10 52 chr11 64497562 64497867 -84285605 + AluSg SINE Alu 1 292 -18 301 274 89 12 chr11 64497869 64498109 -84285363 + L1ME LINE L1 5344 5609 -557 2652 52 0 0 chr11 64498109 64498416 -84285056 + AluY SINE Alu 1 307 -4 390 255 110 76 chr11 64498421 64498695 -84284777 + L2 LINE L2 2787 3060 -212 2006 137 3 7 chr11 64498737 64499037 -84284435 + AluSp SINE Alu 1 299 -14 2397 79 7 0 chr11 64499042 64499333 -84284139 + AluSg SINE Alu 1 293 -17 1727 117 128 4 chr11 64499345 64499618 -84283854 + AluSg1 SINE Alu 1 307 -2 307 319 27 24 chr11 64499855 64500147 -84283325 + AluJo SINE Alu 10 302 0 2172 107 7 7 chr11 64500179 64500479 -84282993 - AluSx SINE Alu -12 300 1 266 307 13 0 chr11 64500480 64500555 -84282917 - L2 LINE L2 -10 3262 3187 371 338 91 44 chr11 64500953 64501317 -84282155 - L2 LINE L2 -50 3222 2842 201 256 281 0 chr11 64501393 64501475 -84281997 + MER5B DNA MER1_type 1 105 -73 2122 115 10 19 chr11 64501513 64501827 -84281645 - AluSx SINE Alu -1 311 1 1004 88 0 0 chr11 64501938 64502063 -84281409 + AluSc SINE Alu 7 131 -178 2607 55 0 3 chr11 64502065 64502374 -84281098 + AluY SINE Alu 1 308 -3 264 98 20 39 chr11 64502524 64502575 -84280897 - AluY SINE Alu -169 132 83 280 237 108 11 chr11 64502575 64502668 -84280804 - L2 LINE L2 -1515 1799 1698 1410 201 11 25 chr11 64502706 64502984 -84280488 + AluJo SINE Alu 26 299 -13 346 311 131 0 chr11 64502984 64503190 -84280282 - L1MC4 LINE L1 -17 8025 7793 574 167 49 0 chr11 64503194 64503296 -84280176 + U6 snRNA snRNA 1 107 0 615 137 8 17 chr11 64503296 64503413 -84280059 + L1PA15 LINE L1 6050 6165 0 2429 96 0 0 chr11 64503425 64503727 -84279745 + AluSx SINE Alu 1 302 -10 29 0 0 0 chr11 64503915 64503944 -84279528 + AT_rich Low_complexity Low_complexity 1 29 0 2294 103 0 0 chr11 64503956 64504247 -84279225 + AluSc SINE Alu 1 291 -18 1565 128 121 8 chr11 64504368 64504633 -84278839 + AluSg1 SINE Alu 1 295 -14 1079 146 12 6 chr11 64504633 64504794 -84278678 + AluSg/x SINE Alu 128 292 -18 1982 131 18 0 chr11 64504803 64505086 -84278386 + AluSp SINE Alu 3 290 -23 695 277 178 16 chr11 64505231 64505545 -84277927 - L2 LINE L2 -1614 1700 1336 275 250 36 89 chr11 64505750 64505862 -84277610 - MER5B DNA MER1_type -72 106 1 180 340 0 0 chr11 64505874 64505927 -84277545 - L2 LINE L2 -1 3271 3219 2198 110 10 0 chr11 64505968 64506269 -84277203 - AluSx SINE Alu -8 304 1 2211 73 3 36 chr11 64506310 64506611 -84276861 - AluY SINE Alu -18 293 3 1028 99 0 0 chr11 64506802 64506933 -84276539 - AluSg SINE Alu -179 131 1 1418 161 142 19 chr11 64506936 64507203 -84276269 - AluJb SINE Alu 0 302 3 2106 67 0 11 chr11 64507258 64507526 -84275946 + AluSc SINE Alu 1 265 -44 271 133 0 0 chr11 64507526 64507571 -84275901 - AluS SINE Alu -29 272 228 307 288 38 0 chr11 64507609 64507689 -84275783 + L1M4 LINE L1 3796 3878 -2268 2285 110 0 22 chr11 64507714 64508033 -84275439 + AluSx SINE Alu 1 312 0 1539 97 5 0 chr11 64508279 64508475 -84274997 - AluSp SINE Alu -116 197 1 545 86 148 0 chr11 64508486 64508567 -84274905 + AluSp/q SINE Alu 193 285 -28 725 22 11 0 chr11 64508568 64508659 -84274813 + (TAGA)n Simple_repeat Simple_repeat 2 93 0 244 33 0 0 chr11 64508687 64508745 -84274727 + AluSp/q SINE Alu 254 311 0 274 298 12 0 chr11 64508746 64508830 -84274642 - MIR SINE MIR -8 254 170 2326 82 0 3 chr11 64508915 64509208 -84274264 + AluSc SINE Alu 1 292 -17 198 0 0 0 chr11 64509314 64509336 -84274136 + (T)n Simple_repeat Simple_repeat 1 22 0 2173 56 46 14 chr11 64509462 64509747 -84273725 - AluY SINE Alu -17 294 1 2165 90 0 10 chr11 64509889 64510178 -84273294 - AluY SINE Alu -16 295 10 2257 106 7 0 chr11 64510232 64510524 -84272948 + AluSx SINE Alu 1 294 -18 497 273 95 61 chr11 64510526 64510766 -84272706 + L1ME LINE L1 5344 5574 -596 2536 71 0 0 chr11 64510766 64511074 -84272398 + AluY SINE Alu 1 308 -3 497 273 95 61 chr11 64511074 64511209 -84272263 + L1ME LINE L1 5574 5703 -467 2202 113 7 0 chr11 64511209 64511502 -84271970 + AluSq SINE Alu 1 295 -18 497 273 95 61 chr11 64511502 64511649 -84271823 + L1ME LINE L1 5703 5885 -285 742 160 0 0 chr11 64511651 64511757 -84271715 + FLAM_C SINE Alu 2 107 -36 29 0 0 0 chr11 64511765 64511794 -84271678 + AT_rich Low_complexity Low_complexity 1 29 0 2380 94 0 0 chr11 64511807 64512116 -84271356 + AluSc SINE Alu 1 309 0 545 275 126 0 chr11 64512374 64512556 -84270916 - L2 LINE L2 -373 2941 2737 1975 166 0 0 chr11 64512558 64512853 -84270619 - AluSx SINE Alu -17 295 1 2068 118 7 3 chr11 64512866 64513057 -84270415 - AluSx SINE Alu 0 325 136 216 0 0 0 chr11 64513057 64513081 -84270391 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2339 81 0 3 chr11 64513081 64513364 -84270108 - AluY SINE Alu -29 282 1 2068 118 7 3 chr11 64513364 64513495 -84269977 - AluSx SINE Alu -188 137 1 35 0 0 0 chr11 64513508 64513543 -84269929 + AT_rich Low_complexity Low_complexity 1 35 0 2123 128 3 3 chr11 64513545 64513835 -84269637 - AluSx SINE Alu -22 290 1 1672 166 40 0 chr11 64513947 64514224 -84269248 - AluJb SINE Alu -24 288 1 1453 183 53 20 chr11 64514363 64514664 -84268808 - AluJo SINE Alu 0 312 2 2387 98 0 13 chr11 64514850 64515166 -84268306 - AluSx SINE Alu 0 312 1 1459 135 24 0 chr11 64515524 64515732 -84267740 + AluSx SINE Alu 1 213 -99 309 109 0 0 chr11 64515732 64515787 -84267685 + AluSx SINE Alu 247 301 0 24 0 0 0 chr11 64515792 64515816 -84267656 + GC_rich Low_complexity Low_complexity 1 24 0 227 238 60 24 chr11 64516160 64516244 -84267228 + L2 LINE L2 1844 1930 -1384 422 264 104 73 chr11 64516253 64516313 -84267159 + L2 LINE L2 2727 2784 -488 2661 49 0 0 chr11 64516313 64516620 -84266852 + AluY SINE Alu 1 307 -4 422 264 104 73 chr11 64516620 64516899 -84266573 + L2 LINE L2 2784 3060 -212 2160 117 3 3 chr11 64516941 64517239 -84266233 + AluSp SINE Alu 1 298 -15 1878 138 25 0 chr11 64517245 64517528 -84265944 + AluSp SINE Alu 1 290 -23 695 277 178 16 chr11 64517673 64517987 -84265485 - L2 LINE L2 -1614 1700 1336 275 250 36 89 chr11 64518192 64518304 -84265168 - MER5B DNA MER1_type -72 106 1 180 340 0 0 chr11 64518316 64518369 -84265103 - L2 LINE L2 -1 3271 3219 1116 116 12 17 chr11 64518410 64518583 -84264889 - AluSg/x SINE Alu -8 304 133 2251 71 64 3 chr11 64518593 64518876 -84264596 - AluSg SINE Alu -10 300 1 2211 73 3 36 chr11 64518988 64519289 -84264183 + AluY SINE Alu 3 293 -18 2502 66 3 7 chr11 64519330 64519634 -84263838 + AluSp SINE Alu 1 303 -10 422 306 171 45 chr11 64519759 64519921 -84263551 - L2 LINE L2 -2 3270 3130 770 110 55 16 chr11 64519921 64520048 -84263424 + FLAM_C SINE Alu 1 132 -1 422 306 171 45 chr11 64520048 64520283 -84263189 - L2 LINE L2 -142 3130 2823 240 326 126 45 chr11 64520313 64520693 -84262779 - L2 LINE L2 -912 2402 1992 287 290 121 8 chr11 64520991 64521115 -84262357 + MER5A DNA MER1_type 52 189 0 405 233 101 95 chr11 64521151 64521231 -84262241 - L1MC4 LINE L1 -9 8033 7955 1832 164 3 16 chr11 64521231 64521535 -84261937 - AluJo SINE Alu 0 312 13 405 233 101 95 chr11 64521535 64521572 -84261900 - L1MC4 LINE L1 -87 7955 7920 2280 125 0 6 chr11 64521572 64521884 -84261588 - AluSg SINE Alu 0 310 1 405 233 101 95 chr11 64521884 64522002 -84261470 - L1MC4 LINE L1 -122 7920 7792 2542 70 0 0 chr11 64522002 64522304 -84261168 - AluY SINE Alu -9 302 1 405 233 101 95 chr11 64522304 64522383 -84261089 - L1MC4 LINE L1 -250 7792 7715 2555 70 0 0 chr11 64522388 64522690 -84260782 - AluY SINE Alu -9 302 1 184 287 113 17 chr11 64522942 64523057 -84260415 - L2 LINE L2 -653 2661 2536 358 268 92 0 chr11 64523136 64523278 -84260194 - Charlie8 DNA MER1_type -2197 220 66 1951 110 19 57 chr11 64523278 64523361 -84260111 + AluSq SINE Alu 1 86 -227 8508 48 10 0 chr11 64523361 64524320 -84259152 - LTR5 LTR ERVK 0 969 1 1951 110 19 57 chr11 64524320 64524553 -84258919 + AluSq SINE Alu 86 305 -8 1387 157 39 99 chr11 64524681 64525063 -84258409 - LTR5 LTR ERVK 0 969 611 1637 70 0 23 chr11 64525063 64525277 -84258195 + AluY SINE Alu 1 209 -102 227 88 0 0 chr11 64525277 64525311 -84258161 + AluY SINE Alu 267 300 -8 3678 166 16 7 chr11 64525311 64525926 -84257546 - LTR5 LTR ERVK -348 621 1 1381 156 103 4 chr11 64525926 64526169 -84257303 + AluJo SINE Alu 26 292 -20 955 176 66 11 chr11 64526186 64526368 -84257104 - AluJo SINE Alu -84 228 37 316 314 13 58 chr11 64526392 64526477 -84256995 + L2 LINE L2 2632 2708 -606 2120 111 21 0 chr11 64526477 64526766 -84256706 + AluSp SINE Alu 1 295 -18 316 314 13 58 chr11 64526766 64526836 -84256636 + L2 LINE L2 2708 2780 -534 2325 84 6 53 chr11 64526868 64527191 -84256281 + AluSx SINE Alu 1 308 -4 740 147 8 47 chr11 64527206 64527335 -84256137 + FLAM_C SINE Alu 5 128 -5 2173 118 3 0 chr11 64527765 64528054 -84255418 - AluSx SINE Alu -22 290 1 1484 187 72 7 chr11 64528058 64528336 -84255136 - AluJo SINE Alu -16 296 1 824 289 104 12 chr11 64528390 64528914 -84254558 - HERV16 LTR ERVL -1698 3558 3003 783 256 70 0 chr11 64528912 64529127 -84254345 - HERV16 LTR ERVL -2639 2357 2128 * 649 226 103 0 chr11 64529141 64529287 -84254185 - AluJo/FRAM SINE Alu -5 297 137 2655 55 0 0 chr11 64529290 64529600 -84253872 - AluY SINE Alu -1 310 1 1009 81 0 0 chr11 64529605 64529728 -84253744 - AluSg/x SINE Alu -14 298 176 840 299 24 36 chr11 64529738 64530106 -84253366 - HERV16 LTR ERVL -2867 2129 1757 2098 105 20 23 chr11 64530106 64530412 -84253060 + AluSq SINE Alu 1 305 -8 814 219 52 21 chr11 64530412 64530676 -84252796 + LTR24 LTR ERV1 233 467 0 1846 121 0 55 chr11 64530779 64531109 -84252363 - AluSx SINE Alu 0 312 1 264 88 0 105 chr11 64531109 64531158 -84252314 - Alu SINE Alu -6 296 252 851 211 6 6 chr11 64531188 64531349 -84252123 - AluJo SINE Alu -149 163 3 590 202 34 0 chr11 64531540 64531659 -84251813 + Charlie1 DNA MER1_type 2349 2471 -290 3097 184 65 7 chr11 64531659 64532264 -84251208 + MER21B LTR ERV1 1 640 -223 27 0 0 0 chr11 64532278 64532305 -84251167 + AT_rich Low_complexity Low_complexity 1 27 0 198 71 0 0 chr11 64532305 64532333 -84251139 + (GGGA)n Simple_repeat Simple_repeat 4 31 0 485 194 11 43 chr11 64532350 64532536 -84250936 + GA-rich Low_complexity Low_complexity 1 180 0 841 169 45 30 chr11 64532556 64532757 -84250715 + MER21A LTR ERV1 702 905 -26 249 98 33 33 chr11 64532777 64532838 -84250634 + Charlie1 DNA MER1_type 2494 2554 -207 34 19 0 19 chr11 64532844 64532871 -84250601 + AT_rich Low_complexity Low_complexity 1 28 -23 1490 172 40 30 chr11 64532871 64533005 -84250467 + AluSx SINE Alu 1 132 -180 2457 78 0 0 chr11 64533005 64533313 -84250159 + AluY SINE Alu 1 308 -3 1490 172 40 30 chr11 64533313 64533480 -84249992 + AluSx SINE Alu 132 305 -7 34 19 0 19 chr11 64533480 64533504 -84249968 + AT_rich Low_complexity Low_complexity 28 51 0 724 145 15 38 chr11 64533505 64533636 -84249836 + FLAM_C SINE Alu 2 129 -14 290 162 14 0 chr11 64533636 64533710 -84249762 + (TA)n Simple_repeat Simple_repeat 1 75 0 1305 128 10 44 chr11 64533721 64533790 -84249682 - AluSp SINE Alu -116 197 127 1802 107 0 52 chr11 64533790 64534118 -84249354 - AluSp SINE Alu -2 311 1 1305 128 10 44 chr11 64534118 64534252 -84249220 - AluSp SINE Alu -186 127 1 1222 144 0 0 chr11 64534253 64534427 -84249045 - AluJb SINE Alu -19 293 120 397 257 160 27 chr11 64536207 64536394 -84247078 + MIR SINE MIR 51 262 0 1689 162 24 30 chr11 64536556 64536853 -84246619 + AluJb SINE Alu 1 295 -17 342 312 16 24 chr11 64537654 64537779 -84245693 - L2 LINE L2 0 3272 3149 373 258 151 44 chr11 64538004 64538163 -84245309 + MER5A DNA MER1_type 14 189 0 211 273 61 0 chr11 64538603 64538669 -84244803 + MIR SINE MIR 40 109 -99 1171 119 18 0 chr11 64538669 64538837 -84244635 - AluSg/x SINE Alu -7 303 133 2541 54 0 0 chr11 64538837 64539133 -84244339 - AluY SINE Alu -15 296 1 341 229 67 19 chr11 64539320 64539425 -84244047 + L2 LINE L2 3142 3251 -62 729 274 49 88 chr11 64539558 64539784 -84243688 + L2 LINE L2 2846 3079 -234 1807 146 31 7 chr11 64539784 64540071 -84243401 - AluJb SINE Alu -14 298 5 729 274 49 88 chr11 64540071 64540150 -84243322 + L2 LINE L2 3079 3160 -153 1920 148 0 23 chr11 64540150 64540454 -84243018 - AluJo SINE Alu -10 302 6 729 274 49 88 chr11 64540454 64540633 -84242839 + L2 LINE L2 3160 3312 -1 934 213 15 10 chr11 64541202 64541399 -84242073 + MIR SINE MIR 12 209 -53 2182 99 0 7 chr11 64542591 64542873 -84240599 + AluSc SINE Alu 13 292 -17 2317 100 7 0 chr11 64542882 64543182 -84240290 + AluSp SINE Alu 1 302 -11 2076 92 4 14 chr11 64543228 64543509 -84239963 + AluSc SINE Alu 15 292 -17 963 106 0 0 chr11 64543540 64543663 -84239809 + AluSq/x SINE Alu 1 123 -189 728 128 40 0 chr11 64543663 64543788 -84239684 + AluSc SINE Alu 168 297 -12 2147 93 30 17 chr11 64543880 64544181 -84239291 + AluSq SINE Alu 1 305 -8 1895 150 10 16 chr11 64544614 64544890 -84238582 + AluSq SINE Alu 6 281 -32 216 0 0 0 chr11 64544890 64544914 -84238558 + (CAAT)n Simple_repeat Simple_repeat 4 27 0 1895 150 10 16 chr11 64544914 64544943 -84238529 + AluSq SINE Alu 281 309 -4 2609 54 0 0 chr11 64545151 64545447 -84238025 + AluY SINE Alu 1 296 -15 745 218 36 0 chr11 64545447 64545612 -84237860 + AluSg/x SINE Alu 124 294 -16 1814 128 3 39 chr11 64545633 64545938 -84237534 - AluSx SINE Alu -18 294 1 1113 125 0 0 chr11 64545962 64546138 -84237334 - L1PA10 LINE L1 0 6168 5993 288 0 0 0 chr11 64546410 64546442 -84237030 + (A)n Simple_repeat Simple_repeat 1 32 0 1764 68 0 27 chr11 64546442 64546663 -84236809 + AluY SINE Alu 80 294 -17 949 114 0 0 chr11 64546694 64546817 -84236655 + AluSq/x SINE Alu 1 123 -190 720 129 40 0 chr11 64546817 64546941 -84236531 + AluSc SINE Alu 168 296 -13 2147 93 30 17 chr11 64547033 64547334 -84236138 + AluSq SINE Alu 1 305 -8 1866 154 10 16 chr11 64547767 64548043 -84235429 + AluSq SINE Alu 6 281 -32 216 0 0 0 chr11 64548043 64548067 -84235405 + (CAAT)n Simple_repeat Simple_repeat 4 27 0 1866 154 10 16 chr11 64548067 64548096 -84235376 + AluSq SINE Alu 281 309 -4 2542 71 0 0 chr11 64548304 64548612 -84234860 + AluY SINE Alu 1 308 -3 548 255 76 0 chr11 64548622 64548779 -84234693 + AluJb SINE Alu 137 305 -7 24 0 0 0 chr11 64548779 64548803 -84234669 + AT_rich Low_complexity Low_complexity 1 24 0 673 145 15 38 chr11 64548804 64548935 -84234537 + FLAM_C SINE Alu 2 129 -14 290 162 14 0 chr11 64548935 64549009 -84234463 + (TA)n Simple_repeat Simple_repeat 2 76 0 419 87 174 0 chr11 64549020 64549089 -84234383 - AluSg/x SINE Alu -115 197 117 2452 106 0 0 chr11 64549089 64549400 -84234072 - AluSp SINE Alu -2 311 1 2240 110 0 0 chr11 64550007 64550307 -84233165 - AluSx SINE Alu -11 301 2 2198 93 0 0 chr11 64550419 64550699 -84232773 - AluSx SINE Alu -32 280 1 315 192 0 0 chr11 64552408 64552481 -84230991 + (CCCCAG)n Simple_repeat Simple_repeat 1 73 0 2319 91 0 31 chr11 64553294 64553613 -84229859 - AluY SINE Alu -2 309 1 1598 103 28 113 chr11 64553616 64553935 -84229537 - AluY SINE Alu -19 292 1 1567 118 0 0 chr11 64553935 64554138 -84229334 - AluSx SINE Alu -109 203 1 231 36 0 0 chr11 64554349 64554377 -84229095 + (T)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chr11 64554596 64554617 -84228855 + GC_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr11 64554779 64554811 -84228661 + AT_rich Low_complexity Low_complexity 1 32 0 261 0 0 0 chr11 64554959 64554988 -84228484 + (T)n Simple_repeat Simple_repeat 1 29 0 401 280 0 19 chr11 64554993 64555100 -84228372 + L1MC3 LINE L1 7075 7179 -606 286 211 67 11 chr11 64555218 64555308 -84228164 + U2 snRNA snRNA 1 95 -93 2060 138 24 0 chr11 64555742 64556038 -84227434 - AluSx SINE Alu -3 309 7 2046 78 71 36 chr11 64556246 64556527 -84226945 + AluY SINE Alu 1 291 -20 2407 104 0 0 chr11 64556541 64556848 -84226624 - AluSq SINE Alu -6 307 1 1622 182 14 20 chr11 64556850 64557146 -84226326 - AluJb SINE Alu -18 294 1 2102 145 7 0 chr11 64557570 64557880 -84225592 - AluSq SINE Alu 0 313 2 2127 142 7 0 chr11 64558030 64558340 -84225132 - AluSx SINE Alu 0 312 1 426 319 113 59 chr11 64558390 64558816 -84224656 - L2 LINE L2 0 3272 2824 2206 120 3 10 chr11 64558856 64559164 -84224308 + AluSx SINE Alu 1 306 -6 521 227 0 16 chr11 64559267 64559395 -84224077 - FRAM SINE Alu -11 165 40 2531 51 3 0 chr11 64559451 64559745 -84223727 - AluY SINE Alu -16 295 1 2356 87 3 3 chr11 64559747 64560045 -84223427 - AluSp SINE Alu -15 298 1 2429 96 0 3 chr11 64561790 64562103 -84221369 - AluSq SINE Alu -1 312 1 2004 134 49 27 chr11 64562787 64563152 -84220320 + MLT1B LTR MaLR 1 373 -17 504 216 160 92 chr11 64563178 64563428 -84220044 + MLT1L LTR MaLR 206 472 -143 295 111 111 0 chr11 64563490 64563544 -84219928 + MLT1K LTR MaLR 528 587 -1 2262 124 0 0 chr11 64563568 64563866 -84219606 + AluSx SINE Alu 1 298 -14 281 274 0 0 chr11 64564059 64564121 -84219351 - MIR SINE MIR -62 146 85 1799 190 119 9 chr11 64564498 64564919 -84218553 + MLT1C LTR MaLR 1 467 0 541 256 47 58 chr11 64564959 64565217 -84218255 + MER112 DNA MER1_type 1 255 -1 320 277 62 18 chr11 64565217 64565329 -84218143 + L2 LINE L2 3192 3308 -5 280 362 36 22 chr11 64565331 64565469 -84218003 - MIR SINE MIR -91 171 32 2417 78 3 0 chr11 64565774 64566067 -84217405 - AluSp SINE Alu -19 294 1 378 271 102 6 chr11 64566140 64566306 -84217166 + L2 LINE L2 240 421 -2893 269 358 103 13 chr11 64566350 64566660 -84216812 - L2 LINE L2 -338 2976 2639 953 167 33 54 chr11 64566681 64566722 -84216750 + MER58 DNA MER1_type 45 85 -256 2073 96 17 20 chr11 64566722 64567014 -84216458 - AluSx SINE Alu -21 291 1 953 167 33 54 chr11 64567014 64567212 -84216260 + MER58 DNA MER1_type 85 279 -62 534 161 0 71 chr11 64567209 64567321 -84216151 + MER58 DNA MER1_type 2317 2420 0 * 318 272 183 31 chr11 64567321 64567512 -84215960 - L2 LINE L2 -681 2633 2414 781 190 61 0 chr11 64569412 64569575 -84213897 - MER5A DNA MER1_type 0 189 17 2468 194 115 23 chr11 64569575 64570134 -84213338 + MER77 LTR ERV1 1 660 -9 205 246 62 0 chr11 64570323 64570388 -84213084 + MIR3 SINE MIR 86 154 -54 461 291 34 11 chr11 64573588 64573763 -84209709 - MIR SINE MIR -12 250 72 1582 154 9 31 chr11 64574111 64574429 -84209043 + AluY SINE Alu 1 311 0 185 258 45 34 chr11 64574730 64574819 -84208653 + MIR SINE MIR 63 152 -56 704 217 36 59 chr11 64575126 64575347 -84208125 + MIR SINE MIR 23 238 -24 2058 104 0 77 chr11 64575418 64575571 -84207901 + AluSp SINE Alu 1 117 -196 291 54 0 0 chr11 64575571 64575608 -84207864 + (CA)n Simple_repeat Simple_repeat 2 38 0 2058 104 0 77 chr11 64575608 64575780 -84207692 + AluSp SINE Alu 117 301 -12 1975 122 17 7 chr11 64575794 64576082 -84207390 + AluY SINE Alu 5 295 -16 921 188 94 0 chr11 64576095 64576287 -84207185 + AluSq SINE Alu 49 258 -55 407 255 140 32 chr11 64576314 64576471 -84207001 + AluJo SINE Alu 122 295 -7 487 276 0 8 chr11 64576975 64577102 -84206370 + FLAM_C SINE Alu 3 128 -5 287 278 130 0 chr11 64581204 64581319 -84202153 - MIR SINE MIR -8 254 125 2504 72 10 0 chr11 64581468 64581773 -84201699 - AluSp SINE Alu -5 308 1 2042 115 3 10 chr11 64581778 64582074 -84201398 - AluSx SINE Alu -18 294 1 1740 129 0 54 chr11 64582077 64582372 -84201100 + AluJb SINE Alu 30 308 -4 377 268 92 0 chr11 64582943 64583085 -84200387 - Charlie8 DNA MER1_type -2197 220 66 1980 107 19 57 chr11 64583085 64583168 -84200304 + AluSq SINE Alu 1 86 -227 8515 48 10 0 chr11 64583168 64584127 -84199345 - LTR5 LTR ERVK 0 969 1 1980 107 19 57 chr11 64584127 64584360 -84199112 + AluSq SINE Alu 86 305 -8 1393 157 39 99 chr11 64584488 64584870 -84198602 - LTR5 LTR ERVK 0 969 611 1741 56 0 23 chr11 64584870 64585084 -84198388 + AluY SINE Alu 1 209 -102 226 88 0 0 chr11 64585084 64585118 -84198354 + AluY SINE Alu 261 294 -8 3820 154 16 7 chr11 64585118 64585733 -84197739 - LTR5 LTR ERVK -348 621 1 1375 157 103 4 chr11 64585733 64585975 -84197497 + AluJo SINE Alu 26 291 -21 990 170 66 11 chr11 64585992 64586174 -84197298 - AluJo SINE Alu -84 228 37 198 288 30 0 chr11 64586198 64586264 -84197208 + L2 LINE L2 2632 2699 -615 2251 110 3 0 chr11 64586283 64586574 -84196898 + AluSp SINE Alu 1 292 -21 393 169 0 0 chr11 64586574 64586639 -84196833 + Alu SINE Alu 234 298 -4 2181 106 3 23 chr11 64586701 64587004 -84196468 + AluSx SINE Alu 1 297 -15 1920 125 14 14 chr11 64587006 64587301 -84196171 + AluSx SINE Alu 1 295 -17 462 169 0 0 chr11 64587313 64587390 -84196082 + AluJ/FLAM SINE Alu 2 78 -234 332 222 54 84 chr11 64587390 64587429 -84196043 - L1MDa LINE L1 -4004 2536 2497 2286 81 30 7 chr11 64587429 64587727 -84195745 - AluY SINE Alu -5 306 2 332 222 54 84 chr11 64587727 64587926 -84195546 - L1MDa LINE L1 -4043 2497 2305 2180 126 0 3 chr11 64587946 64588240 -84195232 + AluSc SINE Alu 1 293 -16 2063 114 40 0 chr11 64588362 64588661 -84194811 + AluSq SINE Alu 1 311 -2 2191 123 0 0 chr11 64588667 64588952 -84194520 + AluSc SINE Alu 3 287 -22 229 86 0 0 chr11 64588952 64588987 -84194485 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 1992 166 0 0 chr11 64589000 64589295 -84194177 + AluSx SINE Alu 1 295 -17 503 296 160 12 chr11 64589297 64589737 -84193735 + L2 LINE L2 2737 3251 -62 740 278 49 87 chr11 64589863 64590096 -84193376 + L2 LINE L2 2839 3079 -234 1802 145 21 3 chr11 64590096 64590385 -84193087 - AluJb SINE Alu -14 298 5 740 278 49 87 chr11 64590385 64590464 -84193008 + L2 LINE L2 3079 3160 -153 1803 148 0 23 chr11 64590464 64590768 -84192704 - AluJo SINE Alu -10 302 6 740 278 49 87 chr11 64590768 64590947 -84192525 + L2 LINE L2 3160 3312 -1 937 213 15 10 chr11 64591516 64591713 -84191759 + MIR SINE MIR 12 209 -53 2009 106 0 7 chr11 64592905 64593187 -84190285 + AluSc SINE Alu 13 292 -17 2209 93 3 0 chr11 64593196 64593510 -84189962 + AluSp SINE Alu 1 315 0 2004 108 37 3 chr11 64593527 64593823 -84189649 + AluSq SINE Alu 1 306 -7 759 224 6 6 chr11 64593823 64593984 -84189488 + AluJo/FRAM SINE Alu 134 294 -18 587 301 36 28 chr11 64594686 64594935 -84188537 + MIR SINE MIR 12 262 0 1859 158 7 0 chr11 64595042 64595334 -84188138 - AluJo SINE Alu -18 294 1 2062 96 0 7 chr11 64595366 64595697 -84187775 + AluSc SINE Alu 1 329 0 1887 116 14 0 chr11 64595706 64596016 -84187456 + AluSc SINE Alu 1 314 0 2073 102 3 3 chr11 64596064 64596378 -84187094 + AluSp SINE Alu 1 314 0 1671 179 0 3 chr11 64596403 64596693 -84186779 + AluJb SINE Alu 1 289 -23 1648 95 16 25 chr11 64596704 64596947 -84186525 + AluSq SINE Alu 1 241 -72 207 0 0 0 chr11 64597056 64597079 -84186393 + (T)n Simple_repeat Simple_repeat 1 23 0 1246 162 33 17 chr11 64597200 64597441 -84186031 - MLT1D LTR MaLR -260 245 1 2045 127 0 7 chr11 64597734 64598033 -84185439 + AluSx SINE Alu 1 297 -15 1088 231 17 0 chr11 64599302 64599536 -84183936 + MIR SINE MIR 8 245 -17 957 82 7 22 chr11 64599784 64599919 -84183553 - FLAM_C SINE Alu 0 133 1 484 159 23 23 chr11 64601245 64601333 -84182139 - FLAM_A SINE Alu -10 132 45 486 294 29 7 chr11 64601353 64601489 -84181983 + MIR3 SINE MIR 6 144 -64 239 265 78 29 chr11 64601514 64601616 -84181856 + MER5A DNA MER1_type 38 144 -45 1050 236 4 4 chr11 64601632 64601861 -84181611 + MIR SINE MIR 13 241 -21 1849 97 0 87 chr11 64602014 64602291 -84181181 - AluSc SINE Alu 0 335 91 2482 50 3 0 chr11 64602291 64602594 -84180878 - AluY SINE Alu -7 304 1 1849 97 0 87 chr11 64602594 64602678 -84180794 - AluSc SINE Alu -244 91 1 198 309 44 0 chr11 64605364 64605432 -84178040 + MIR3 SINE MIR 90 160 -48 223 270 0 16 chr11 64606348 64606411 -84177061 + MIR SINE MIR 87 148 -60 2457 54 0 0 chr11 64606753 64607049 -84176423 - AluY SINE Alu -15 296 1 23 0 0 0 chr11 64609137 64609160 -84174312 + GC_rich Low_complexity Low_complexity 1 23 0 252 0 0 0 chr11 64609284 64609312 -84174160 + (A)n Simple_repeat Simple_repeat 1 28 0 1141 214 82 52 chr11 64609335 64609737 -84173735 - MER96B DNA MER1_type -3 414 1 211 362 9 9 chr11 64609748 64609853 -84173619 + MIR SINE MIR 47 151 -111 2081 116 0 0 chr11 64609905 64610218 -84173254 - AluSx SINE Alu 0 313 1 359 315 47 39 chr11 64610736 64610949 -84172523 - MIR3 SINE MIR -50 212 3 554 267 77 65 chr11 64611919 64612166 -84171306 - MIR SINE MIR -1 261 12 370 216 148 0 chr11 64612384 64612472 -84171000 + L2 LINE L2 3210 3310 -3 195 350 10 29 chr11 64613894 64613997 -84169475 + MIR SINE MIR 33 133 -75 282 232 29 14 chr11 64615502 64615571 -84167901 + GA-rich Low_complexity Low_complexity 1 70 0 218 200 0 0 chr11 64616802 64616842 -84166630 - MIR SINE MIR -112 150 111 392 299 36 24 chr11 64618144 64618311 -84165161 + MIR SINE MIR 41 209 -53 320 276 16 78 chr11 64618351 64618543 -84164929 - AluJo SINE Alu -3 299 120 655 127 0 42 chr11 64618748 64618866 -84164606 - LTR19A LTR ERV1 -10 476 364 627 71 0 12 chr11 64618888 64618972 -84164500 - AluS SINE Alu -229 84 2 1418 143 85 3 chr11 64618973 64619293 -84164179 - LTR19A LTR ERV1 -106 380 1 2021 124 3 0 chr11 64619343 64619668 -84163804 + AluSx SINE Alu 1 312 0 1233 175 9 18 chr11 64619738 64619961 -84163511 - AluJo SINE Alu -91 221 1 376 170 190 40 chr11 64620083 64620183 -84163289 - MIR SINE MIR -33 229 115 666 93 10 0 chr11 64620203 64620300 -84163172 - AluY SINE Alu 0 311 214 2221 91 10 0 chr11 64620432 64620729 -84162743 - AluSp SINE Alu -13 300 1 284 208 0 0 chr11 64620732 64620788 -84162684 - L1MEc LINE L1 -4759 1637 1579 2019 110 0 31 chr11 64620788 64621107 -84162365 - AluSc SINE Alu 0 309 1 284 208 0 0 chr11 64621107 64621127 -84162345 - L1MEc LINE L1 -4816 1580 1561 274 286 182 0 chr11 64621129 64621332 -84162140 - L1M4 LINE L1 -1163 4983 4744 649 205 0 0 chr11 64621340 64621462 -84162010 - FLAM_C SINE Alu 0 143 22 1471 150 4 0 chr11 64621579 64621805 -84161667 - AluSc SINE Alu -82 227 1 1172 113 176 5 chr11 64621947 64622151 -84161321 - AluSg1 SINE Alu -70 239 1 2180 78 0 52 chr11 64622163 64622472 -84161000 - AluSg SINE Alu -17 293 1 2117 95 0 33 chr11 64622523 64622859 -84160613 - AluSc SINE Alu 0 309 1 287 281 182 0 chr11 64622881 64623084 -84160388 - L1M4 LINE L1 -1163 4983 4744 646 194 0 16 chr11 64623092 64623216 -84160256 - FLAM_C SINE Alu 0 143 22 2094 90 3 23 chr11 64623222 64623559 -84159913 - AluSg SINE Alu 0 331 1 1768 129 0 26 chr11 64623613 64623923 -84159549 - AluSq SINE Alu -11 302 1 669 184 0 9 chr11 64623940 64624054 -84159418 - AluJo SINE Alu -178 134 22 256 343 18 12 chr11 64624116 64624285 -84159187 - L1M4 LINE L1 -1443 4703 4534 2136 84 3 11 chr11 64624285 64624597 -84158875 - AluY SINE Alu 0 310 1 1676 169 33 13 chr11 64624625 64624926 -84158546 + AluJb SINE Alu 1 307 -5 2113 108 3 0 chr11 64624989 64625285 -84158187 - AluSp SINE Alu -16 297 1 1660 155 0 34 chr11 64625418 64625590 -84157882 - AluJb SINE Alu -25 287 128 1987 100 0 17 chr11 64625590 64625890 -84157582 + AluSg SINE Alu 1 295 -15 1660 155 0 34 chr11 64625890 64626014 -84157458 - AluJb SINE Alu -184 128 1 645 167 75 17 chr11 64626032 64626152 -84157320 - FLAM_C SINE Alu -6 127 1 901 170 5 40 chr11 64626170 64626370 -84157102 - AluJo SINE Alu 0 312 120 189 0 0 0 chr11 64626370 64626391 -84157081 + (T)n Simple_repeat Simple_repeat 1 21 0 25 31 0 0 chr11 64626394 64626426 -84157046 + AT_rich Low_complexity Low_complexity 1 32 0 2181 96 3 3 chr11 64626552 64626853 -84156619 - AluSg SINE Alu -9 301 1 238 229 66 0 chr11 64626890 64626951 -84156521 + MER5A DNA MER1_type 52 116 -73 1994 121 7 23 chr11 64626964 64627270 -84156202 - AluSx SINE Alu -11 301 1 1232 158 3 125 chr11 64627276 64627605 -84155867 - AluSx SINE Alu -23 289 1 186 310 134 0 chr11 64628516 64628658 -84154814 - L2 LINE L2 -239 3033 2873 292 254 30 0 chr11 64630508 64630575 -84152897 + MIR SINE MIR 74 142 -66 1350 146 4 13 chr11 64630753 64630986 -84152486 - AluSg/x SINE Alu -14 298 68 260 296 43 52 chr11 64632264 64632379 -84151093 + MIR SINE MIR 32 145 -63 252 0 0 0 chr11 64633079 64633107 -84150365 + (T)n Simple_repeat Simple_repeat 1 28 0 895 132 7 0 chr11 64633371 64633507 -84149965 - AluSg/x SINE Alu -41 271 135 2218 91 3 0 chr11 64633507 64633803 -84149669 - AluSx SINE Alu -15 297 1 183 381 12 0 chr11 64634384 64634468 -84149004 + MIR SINE MIR 53 137 -71 214 274 16 16 chr11 64634612 64634674 -84148798 - L2 LINE L2 -94 3219 3158 2153 122 3 0 chr11 64634680 64634991 -84148481 + AluSx SINE Alu 1 312 0 1360 181 6 73 chr11 64635096 64635270 -84148202 - AluJb SINE Alu -19 293 148 1488 160 29 59 chr11 64635270 64635576 -84147896 - AluJb SINE Alu -15 297 1 1360 181 6 73 chr11 64635576 64635715 -84147757 - AluJb SINE Alu -164 148 1 507 298 223 15 chr11 64635742 64636074 -84147398 - L2 LINE L2 0 3313 2913 2174 94 17 7 chr11 64636098 64636396 -84147076 + AluSx SINE Alu 1 301 -11 1625 190 0 14 chr11 64636478 64636773 -84146699 - AluJo SINE Alu -21 291 1 243 297 63 0 chr11 64637594 64637705 -84145767 - MIR3 SINE MIR -47 161 44 601 335 114 3 chr11 64637890 64638215 -84145257 - L2 LINE L2 -2 3311 2951 769 272 173 42 chr11 64638397 64638871 -84144601 - MER77 LTR ERV1 -4 601 66 359 237 254 12 chr11 64638912 64639085 -84144387 - L2 LINE L2 -549 2765 2551 2171 55 48 7 chr11 64639108 64639401 -84144071 - AluY SINE Alu -6 305 1 2041 107 7 0 chr11 64639536 64639825 -84143647 + AluSq SINE Alu 1 291 -22 1150 233 7 7 chr11 64640348 64640640 -84142832 + AluSx SINE Alu 11 302 -10 2209 177 61 39 chr11 64640645 64641137 -84142335 + MLT1D LTR MaLR 3 505 0 1746 161 10 0 chr11 64641161 64641466 -84142006 + AluJb SINE Alu 1 308 -4 26 50 0 0 chr11 64641592 64641632 -84141840 + AT_rich Low_complexity Low_complexity 1 40 0 2411 74 0 0 chr11 64641632 64641941 -84141531 - AluY SINE Alu -2 309 1 1462 191 0 0 chr11 64642290 64642562 -84140910 + AluJo SINE Alu 23 294 -18 253 265 112 31 chr11 64642574 64642672 -84140800 + MER91A DNA MER1_type 90 195 -1 2135 102 13 0 chr11 64642695 64642998 -84140474 - AluSg SINE Alu -3 307 1 617 139 0 0 chr11 64643006 64643107 -84140365 - AluSg/x SINE Alu -2 307 207 1465 269 114 8 chr11 64643108 64643572 -84139900 - L2 LINE L2 -847 2467 1945 1898 79 97 0 chr11 64643572 64643839 -84139633 + AluSg SINE Alu 1 293 -17 1465 269 114 8 chr11 64643839 64643873 -84139599 - L2 LINE L2 -1369 1945 1916 296 235 74 12 chr11 64643952 64644033 -84139439 + MER5A DNA MER1_type 10 95 -94 1009 180 14 55 chr11 64644033 64644250 -84139222 - AluJo SINE Alu -28 284 77 1113 97 0 0 chr11 64644739 64644884 -84138588 + AluSq SINE Alu 85 229 -84 31 26 0 0 chr11 64644892 64644930 -84138542 + AT_rich Low_complexity Low_complexity 1 38 0 1879 96 34 27 chr11 64644932 64645225 -84138247 + AluSq SINE Alu 1 295 -18 987 186 0 11 chr11 64645251 64645439 -84138033 - AluJo SINE Alu -126 186 1 849 191 27 22 chr11 64645485 64645710 -84137762 + AluJo SINE Alu 79 304 -8 858 113 0 53 chr11 64648305 64648456 -84135016 + FLAM_C SINE Alu 1 143 0 700 229 55 16 chr11 64649139 64649322 -84134150 - MIR SINE MIR -43 219 30 303 309 56 25 chr11 64650135 64650297 -84133175 - MIR3 SINE MIR -21 187 21 287 193 0 0 chr11 64651213 64651270 -84132202 + HY1 scRNA scRNA 56 112 0 185 300 173 18 chr11 64651441 64651551 -84131921 - MIR3 SINE MIR -68 140 14 2042 127 0 10 chr11 64651930 64652237 -84131235 + AluSx SINE Alu 1 304 -8 2224 101 0 16 chr11 64652350 64652667 -84130805 + AluSx SINE Alu 1 312 0 1288 170 5 5 chr11 64653024 64653248 -84130224 + AluJb SINE Alu 65 288 -24 1892 136 3 7 chr11 64653291 64653593 -84129879 - AluSx SINE Alu -11 301 1 2022 65 3 20 chr11 64653618 64653912 -84129560 + AluSq SINE Alu 4 292 -21 271 213 0 12 chr11 64654189 64654269 -84129203 + L1M4 LINE L1 3876 3954 -2192 2155 83 0 10 chr11 64654281 64654581 -84128891 + AluY SINE Alu 1 297 -14 2003 71 4 14 chr11 64654599 64654879 -84128593 + AluSc SINE Alu 1 277 -32 306 288 38 0 chr11 64654950 64655030 -84128442 + L1M4 LINE L1 3796 3878 -2268 1956 144 7 0 chr11 64655055 64655354 -84128118 + AluSq SINE Alu 1 301 -12 1002 140 0 18 chr11 64655510 64655674 -84127798 - AluSx SINE Alu -151 161 1 2350 62 3 3 chr11 64655699 64656005 -84127467 + AluSq SINE Alu 4 309 -4 256 293 151 19 chr11 64656086 64656192 -84127280 + L2 LINE L2 3193 3312 -1 277 324 143 0 chr11 64656709 64656814 -84126658 + L2 LINE L2 3193 3312 -1 1045 65 14 0 chr11 64657849 64657988 -84125484 - AluSq SINE Alu -15 298 158 2332 37 14 14 chr11 64658046 64658343 -84125129 + AluY SINE Alu 6 302 -9 265 170 0 0 chr11 64658519 64658566 -84124906 - AluSq SINE Alu -6 294 248 521 172 99 66 chr11 64658566 64658717 -84124755 - AluSq SINE Alu -156 157 2 1219 102 5 60 chr11 64658746 64658880 -84124592 + AluY SINE Alu 1 120 -191 2117 92 0 7 chr11 64658880 64659183 -84124289 + AluSc SINE Alu 1 301 -8 1219 102 5 60 chr11 64659183 64659263 -84124209 + AluY SINE Alu 120 203 -108 1656 27 0 0 chr11 64659465 64659651 -84123821 - U2 snRNA snRNA -2 186 1 250 377 84 0 chr11 64660083 64660237 -84123235 + MIR SINE MIR 21 187 -75 1242 218 77 45 chr11 64660488 64660864 -84122608 - LTR65 LTR ERV1 -97 572 185 2185 113 0 0 chr11 64660963 64661264 -84122208 + AluSx SINE Alu 1 301 -11 2319 174 57 36 chr11 64661269 64661762 -84121710 + MLT1D LTR MaLR 3 505 0 1791 160 7 0 chr11 64661786 64662092 -84121380 + AluJb SINE Alu 1 308 -4 213 40 0 80 chr11 64662224 64662274 -84121198 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 1754 113 12 0 chr11 64662281 64662538 -84120934 - AluSp SINE Alu -23 290 31 1401 78 0 16 chr11 64662541 64662733 -84120739 + AluY SINE Alu 107 295 -16 433 74 0 0 chr11 64662733 64662787 -84120685 - AluSg1 SINE Alu -199 110 57 986 142 16 42 chr11 64662787 64662977 -84120495 - AluSq SINE Alu -122 191 7 2200 70 13 7 chr11 64662992 64663290 -84120182 - AluY SINE Alu -11 300 1 634 210 0 36 chr11 64663304 64663442 -84120030 - FLAM_C SINE Alu 0 133 1 1978 105 30 24 chr11 64663483 64663778 -84119694 - AluSx SINE Alu -15 297 1 31 26 0 0 chr11 64663780 64663818 -84119654 + AT_rich Low_complexity Low_complexity 1 38 0 1113 97 0 0 chr11 64663826 64663971 -84119501 - AluSq SINE Alu -84 229 85 232 259 0 74 chr11 64664340 64664368 -84119104 - LTR19A LTR ERV1 -2 484 455 2207 91 0 31 chr11 64664368 64664687 -84118785 + AluSp SINE Alu 5 313 0 232 259 0 74 chr11 64664687 64664766 -84118706 - LTR19A LTR ERV1 -31 455 385 180 0 0 0 chr11 64664778 64664798 -84118674 + (T)n Simple_repeat Simple_repeat 1 20 0 36 0 0 0 chr11 64664817 64664853 -84118619 + GC_rich Low_complexity Low_complexity 1 36 0 29 0 0 0 chr11 64664903 64664932 -84118540 + AT_rich Low_complexity Low_complexity 1 29 0 282 264 83 58 chr11 64665283 64665404 -84118068 + L2 LINE L2 3190 3313 0 546 310 99 26 chr11 64666800 64667249 -84116223 - L2 LINE L2 -177 3136 2650 1655 112 15 34 chr11 64667253 64667522 -84115950 - AluSg SINE Alu -10 300 37 1346 202 21 97 chr11 64668958 64669340 -84114132 - MLT1B LTR MaLR -37 353 1 1313 211 31 103 chr11 64669340 64669756 -84113716 - L1MC4a LINE L1 -1037 6771 6386 867 253 98 0 chr11 64669765 64670042 -84113430 + L1MCa LINE L1 28 331 -6095 22 0 0 0 chr11 64670836 64670858 -84112614 + AT_rich Low_complexity Low_complexity 1 22 0 888 209 41 0 chr11 64670868 64671040 -84112432 + AluJo SINE Alu 5 183 -129 22 88 0 0 chr11 64671069 64671126 -84112346 + AT_rich Low_complexity Low_complexity 1 57 0 2685 101 22 0 chr11 64671177 64671584 -84111888 - L1PBa LINE L1 -4120 2743 2328 180 158 0 0 chr11 64671684 64671722 -84111750 + A-rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr11 64671744 64671773 -84111699 + AT_rich Low_complexity Low_complexity 1 29 0 195 129 0 0 chr11 64671794 64671825 -84111647 + (T)n Simple_repeat Simple_repeat 1 31 0 572 290 76 17 chr11 64673091 64673329 -84110143 + MIR SINE MIR 1 252 -10 344 320 66 66 chr11 64673426 64673654 -84109818 + L2 LINE L2 3039 3266 -6 2012 103 3 0 chr11 64673939 64674254 -84109218 + AluSx SINE Alu 2 317 0 1861 98 76 0 chr11 64674328 64674605 -84108867 + AluSx SINE Alu 1 298 -14 2166 127 0 0 chr11 64674825 64675133 -84108339 + AluSx SINE Alu 1 308 -4 1824 94 8 0 chr11 64676081 64676335 -84107137 - L1PB1 LINE L1 0 6151 5896 684 305 70 31 chr11 64676419 64676806 -84106666 - L1M4 LINE L1 -2614 3532 3131 944 131 13 20 chr11 64676848 64677001 -84106471 + AluJb SINE Alu 137 288 -24 315 177 0 0 chr11 64677001 64677063 -84106409 + G-rich Low_complexity Low_complexity 1 62 0 1001 117 167 11 chr11 64677163 64677343 -84106129 + pTR5 LTR ERV1 1818 2025 -413 289 313 0 0 chr11 64677343 64677442 -84106030 + LTR30 LTR ERV1 544 642 -80 2429 87 3 0 chr11 64677442 64677765 -84105707 + pTR5 LTR ERV1 66 389 -2049 272 337 49 99 chr11 64677765 64677802 -84105670 + L2 LINE L2 2677 2714 -600 2251 84 10 0 chr11 64677802 64678110 -84105362 + AluY SINE Alu 1 311 0 272 337 49 99 chr11 64678110 64678315 -84105157 + L2 LINE L2 2714 2907 -407 25 0 0 0 chr11 64678466 64678491 -84104981 + AT_rich Low_complexity Low_complexity 1 25 0 318 213 0 0 chr11 64678619 64678680 -84104792 + MER51A LTR ERV1 558 618 -16 23 0 0 0 chr11 64679362 64679385 -84104087 + AT_rich Low_complexity Low_complexity 1 23 0 281 246 16 0 chr11 64679386 64679447 -84104025 - MER5A DNA MER1_type 0 189 128 186 342 179 0 chr11 64679546 64679663 -84103809 - L2 LINE L2 -504 2810 2673 282 29 0 0 chr11 64680422 64680457 -84103015 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 217 242 44 66 chr11 64680830 64680921 -84102551 - MIR SINE MIR -10 252 164 22 0 0 0 chr11 64681442 64681464 -84102008 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr11 64682547 64682576 -84100896 + AT_rich Low_complexity Low_complexity 1 29 0 2102 94 13 13 chr11 64683417 64683725 -84099747 - AluSp SINE Alu -1 312 5 1958 130 63 28 chr11 64684441 64684803 -84098669 + THE1C LTR MaLR 1 375 0 2001 123 13 0 chr11 64685651 64685952 -84097520 + AluSp SINE Alu 1 305 -8 429 101 174 0 chr11 64685958 64686027 -84097445 + AluSg/x SINE Alu 117 197 -115 290 162 14 0 chr11 64686038 64686112 -84097360 + (TA)n Simple_repeat Simple_repeat 2 76 0 643 160 15 38 chr11 64686112 64686243 -84097229 - FLAM_C SINE Alu -14 129 2 28 0 0 0 chr11 64686244 64686272 -84097200 + AT_rich Low_complexity Low_complexity 1 28 0 504 235 78 13 chr11 64686274 64686427 -84097045 - FRAM SINE Alu -3 163 1 2442 176 37 7 chr11 64686636 64687068 -84096404 - MSTB2 LTR MaLR 0 457 13 436 318 95 60 chr11 64687635 64687887 -84095585 - L2 LINE L2 -2 3311 3051 557 354 45 8 chr11 64688192 64688438 -84095034 - MIR SINE MIR 0 262 8 557 247 46 95 chr11 64688979 64689262 -84094210 + MLT1D LTR MaLR 10 278 -227 1341 210 15 32 chr11 64689952 64690295 -84093177 + L1M3 LINE L1 5402 5738 -442 1657 88 0 9 chr11 64690888 64691104 -84092368 + L1PA8 LINE L1 5944 6157 -15 450 100 133 44 chr11 64691217 64691307 -84092165 + Tigger7 DNA MER2_type 2394 2491 0 1905 113 0 119 chr11 64691852 64692189 -84091283 - AluSx SINE Alu -15 297 1 23 54 0 0 chr11 64692636 64692673 -84090799 + AT_rich Low_complexity Low_complexity 1 37 0 418 268 0 59 chr11 64693153 64693306 -84090166 - MIR SINE MIR -37 225 82 747 92 36 2 chr11 64693556 64693793 -84089679 + AluSx SINE Alu 1 301 0 497 152 65 11 chr11 64694307 64694399 -84089073 + MLT1D LTR MaLR 446 542 0 186 103 0 0 chr11 64695248 64695277 -84088195 + (TA)n Simple_repeat Simple_repeat 1 29 0 499 274 58 76 chr11 64695962 64696054 -84087418 + ERVL LTR ERVL 3452 3544 -2110 2208 131 27 56 chr11 64696054 64696429 -84087043 - THE1B LTR MaLR 0 364 1 499 274 58 76 chr11 64696429 64696664 -84086808 + ERVL LTR ERVL 3544 3773 -1881 626 304 52 45 chr11 64696685 64697066 -84086406 + ERVL LTR ERVL 5031 5414 -350 1902 135 7 11 chr11 64697490 64697772 -84085700 + AluSx SINE Alu 15 295 -17 410 317 50 44 chr11 64697869 64698076 -84085396 - MIR3 SINE MIR -52 210 5 3024 151 43 16 chr11 64698943 64699525 -84083947 + L1 LINE L1 4110 4707 -1439 272 275 94 29 chr11 64700452 64700623 -84082849 - LTR37B LTR ERV1 -61 407 226 22 0 0 0 chr11 64701123 64701145 -84082327 + AT_rich Low_complexity Low_complexity 1 22 0 1586 258 95 4 chr11 64702613 64703151 -84080321 + L1MC4 LINE L1 6862 7448 -594 279 233 89 0 chr11 64703154 64703244 -84080228 + L1MC4 LINE L1 7920 8017 -25 2257 142 134 8 chr11 64703455 64703835 -84079637 + MSTA LTR MaLR 1 428 0 22 0 0 0 chr11 64703944 64703966 -84079506 + AT_rich Low_complexity Low_complexity 1 22 0 185 0 0 39 chr11 64704798 64704824 -84078648 + (TTA)n Simple_repeat Simple_repeat 3 27 0 588 278 89 39 chr11 64706480 64706894 -84076578 + HAL1b LINE L1 212 646 -702 22 56 0 0 chr11 64709532 64709568 -84073904 + AT_rich Low_complexity Low_complexity 1 36 0 860 221 105 105 chr11 64709612 64709860 -84073612 - LTR40b LTR ERVL 0 462 212 1992 151 10 0 chr11 64709860 64710165 -84073307 + AluSg SINE Alu 1 308 -2 860 221 105 105 chr11 64710165 64710260 -84073212 - LTR40b LTR ERVL -249 213 119 23 77 0 0 chr11 64710847 64710886 -84072586 + AT_rich Low_complexity Low_complexity 1 39 0 1336 241 56 27 chr11 64711091 64711539 -84071933 + MLT1C LTR MaLR 1 461 -6 1839 134 25 38 chr11 64711951 64712265 -84071207 + AluSg SINE Alu 1 310 0 576 203 64 48 chr11 64712576 64712763 -84070709 - LTR41 LTR ERVL -583 190 1 332 284 131 55 chr11 64713205 64713480 -84069992 - L2 LINE L2 -109 3204 2909 246 271 93 25 chr11 64714091 64714209 -84069263 + L2 LINE L2 1871 1996 -1318 270 206 0 0 chr11 64714330 64714393 -84069079 + (TATG)n Simple_repeat Simple_repeat 2 64 0 407 335 108 6 chr11 64714589 64714765 -84068707 - L3 LINE CR1 -12 1565 1372 2349 75 27 0 chr11 64714766 64715061 -84068411 + AluSq SINE Alu 1 303 -10 21 0 0 0 chr11 64715214 64715235 -84068237 + GC_rich Low_complexity Low_complexity 1 21 0 7668 52 0 3 chr11 64715266 64716744 -84066728 + L1PA7 LINE L1 4678 6154 0 1455 118 4 35 chr11 64716753 64716982 -84066490 - THE1C LTR MaLR -34 341 120 650 273 251 10 chr11 64717091 64717504 -84065968 + MLT1G LTR MaLR 62 587 -3 761 321 57 32 chr11 64717575 64717946 -84065526 - HERVL LTR ERVL -2566 3088 2709 22 0 0 0 chr11 64718403 64718425 -84065047 + AT_rich Low_complexity Low_complexity 1 22 0 342 153 89 8 chr11 64718508 64718579 -84064893 + THE1C LTR MaLR 3 69 -306 5075 134 11 7 chr11 64718679 64719970 -84063502 - L1PBa LINE L1 -4786 2077 636 1088 190 5 0 chr11 64719971 64720166 -84063306 - L1PBa LINE L1 -6662 201 6 413 133 11 67 chr11 64720210 64720300 -84063172 + MLT1D LTR MaLR 1 85 -420 303 28 0 0 chr11 64721058 64721094 -84062378 + (CA)n Simple_repeat Simple_repeat 2 37 0 303 146 0 21 chr11 64721233 64721281 -84062191 - MSTA LTR MaLR 0 428 382 11694 67 8 1 chr11 64721281 64722766 -84060706 + L1P3 LINE L1 10 1504 -4957 232 359 75 34 chr11 64722922 64723237 -84060235 + L2 LINE L2 2737 3059 -213 28 0 0 0 chr11 64723348 64723376 -84060096 + AT_rich Low_complexity Low_complexity 1 28 0 187 195 0 49 chr11 64723427 64723468 -84060004 + L2 LINE L2 3263 3301 -12 515 288 52 36 chr11 64723673 64723963 -84059509 + L2 LINE L2 2756 3050 -263 689 75 0 11 chr11 64723963 64724056 -84059416 - AluY SINE Alu -6 305 214 353 305 11 0 chr11 64724141 64724236 -84059236 + L2 LINE L2 3218 3313 0 362 306 22 52 chr11 64724367 64724501 -84058971 + MIR SINE MIR 32 161 -101 194 265 20 20 chr11 64724651 64724700 -84058772 + MIR SINE MIR 49 97 -165 2210 112 0 0 chr11 64725055 64725350 -84058122 - AluSq SINE Alu -18 295 1 996 286 33 12 chr11 64725350 64725790 -84057682 - L1ME3A LINE L1 -236 5934 5486 906 256 38 0 chr11 64726003 64726214 -84057258 - MER20 DNA MER1_type 0 219 1 309 288 0 0 chr11 64726579 64726645 -84056827 + L1MDa LINE L1 17 82 -6458 2550 263 94 9 chr11 64726655 64727369 -84056103 + L1MDa LINE L1 58 802 -5738 632 286 48 9 chr11 64727386 64727613 -84055859 + L1M4 LINE L1 3177 3412 -2734 269 182 0 0 chr11 64727634 64727689 -84055783 + L1M4 LINE L1 4637 4691 -1455 458 231 83 0 chr11 64727972 64728080 -84055392 - MIR SINE MIR -95 167 51 2352 70 0 3 chr11 64729374 64729675 -84053797 - AluY SINE Alu -11 300 1 201 74 0 0 chr11 64729742 64729769 -84053703 + (GAA)n Simple_repeat Simple_repeat 2 28 0 202 227 0 45 chr11 64731118 64731184 -84052288 + (CA)n Simple_repeat Simple_repeat 2 64 0 251 254 0 0 chr11 64731704 64731759 -84051713 - L2 LINE L2 0 3313 3259 28 48 0 0 chr11 64732498 64732540 -84050932 + GC_rich Low_complexity Low_complexity 1 42 0 227 289 16 41 chr11 64733010 64733131 -84050341 + MIR SINE MIR 139 256 -6 2204 95 11 0 chr11 64734484 64734768 -84048704 - AluSg SINE Alu -23 287 1 1881 161 3 3 chr11 64735071 64735363 -84048109 + AluJo SINE Alu 1 292 -20 465 238 0 0 chr11 64736809 64736889 -84046583 + AluJ/FLAM SINE Alu 2 81 -231 * 789 164 86 8 chr11 64736888 64737016 -84046456 + AluJo/FRAM SINE Alu 152 289 -23 1135 155 28 0 chr11 64737028 64737209 -84046263 + AluJo SINE Alu 120 305 -7 290 279 16 50 chr11 64738567 64738759 -84044713 + CT-rich Low_complexity Low_complexity 1 185 0 1176 103 11 49 chr11 64739346 64739531 -84043941 - AluSp SINE Alu -2 311 134 1522 128 121 8 chr11 64739531 64739796 -84043676 - AluSg1 SINE Alu -14 295 1 2260 103 0 0 chr11 64739917 64740208 -84043264 - AluSc SINE Alu -18 291 1 29 0 0 0 chr11 64740220 64740249 -84043223 + AT_rich Low_complexity Low_complexity 1 29 0 2382 96 0 0 chr11 64740437 64740739 -84042733 - AluSx SINE Alu -10 302 1 665 137 8 17 chr11 64740751 64740868 -84042604 - L1PA15 LINE L1 0 6165 6050 611 167 49 0 chr11 64740868 64740970 -84042502 - U6 snRNA snRNA 0 107 1 439 296 123 14 chr11 64740974 64741194 -84042278 + L1MC4 LINE L1 7793 8036 -6 1368 210 11 4 chr11 64741196 64741458 -84042014 - AluJo SINE Alu -23 289 26 286 237 108 11 chr11 64741496 64741589 -84041883 + L2 LINE L2 1698 1799 -1515 969 122 59 95 chr11 64741589 64741810 -84041662 + AluSc SINE Alu 83 295 -14 452 253 25 68 chr11 64741821 64741863 -84041609 + L2 LINE L2 1789 1831 -1483 1697 125 148 8 chr11 64741863 64742127 -84041345 - AluSx SINE Alu 0 302 2 452 253 25 68 chr11 64742127 64742246 -84041226 + L2 LINE L2 1831 1943 -1371 973 201 127 24 chr11 64742343 64742712 -84040760 + L1ME LINE L1 977 1383 -5147 23 54 0 0 chr11 64742717 64742754 -84040718 + AT_rich Low_complexity Low_complexity 1 37 0 331 200 104 9 chr11 64742773 64742888 -84040584 + L1ME LINE L1 1413 1538 -4900 1151 175 64 105 chr11 64742890 64742912 -84040560 + AluJo SINE Alu 1 22 -280 1823 99 0 4 chr11 64742912 64743165 -84040307 + AluSq SINE Alu 51 302 -11 2055 127 0 19 chr11 64743175 64743491 -84039981 + AluSq SINE Alu 1 310 -3 1151 175 64 105 chr11 64743491 64743771 -84039701 + AluJo SINE Alu 31 301 -1 324 149 0 30 chr11 64743779 64743846 -84039626 + L1ME LINE L1 1860 1924 -4616 2508 61 0 6 chr11 64743846 64744159 -84039313 + AluY SINE Alu 1 311 0 267 313 83 0 chr11 64744770 64744866 -84038606 + L2 LINE L2 3156 3259 -13 232 182 0 23 chr11 64745135 64745179 -84038293 - MIR SINE MIR -62 146 104 1600 130 87 4 chr11 64746121 64746397 -84037075 + AluJb SINE Alu 1 299 -13 334 345 91 35 chr11 64747066 64747263 -84036209 + L1MC/D LINE L1 5296 5503 -2305 30 0 0 0 chr11 64748598 64748628 -84034844 + AT_rich Low_complexity Low_complexity 1 30 0 348 319 95 77 chr11 64749301 64749993 -84033479 - L2 LINE L2 -1 3271 2587 550 138 0 11 chr11 64750905 64750992 -84032480 - MSTB LTR MaLR -296 130 45 * 1758 151 51 16 chr11 64750989 64751301 -84032171 + LTR18B LTR ERVL 292 614 0 1605 148 15 7 chr11 64751322 64751593 -84031879 + HERVL18 LTR ERVL 19 291 -5756 831 237 12 0 chr11 64751593 64751766 -84031706 + HERVL18 LTR ERVL 492 666 -5381 1152 180 6 13 chr11 64751794 64752156 -84031316 + HERVL18 LTR ERVL 1388 1810 -4237 657 175 20 14 chr11 64752155 64752381 -84031091 + HERVL18 LTR ERVL 2119 2452 -3595 * 984 183 0 7 chr11 64752378 64752575 -84030897 + HERVL18 LTR ERVL 2718 2959 -3088 3260 180 25 2 chr11 64752624 64753152 -84030320 + HERVL18 LTR ERVL 2952 3491 -2556 4003 127 26 12 chr11 64753353 64753958 -84029514 + LTR18B LTR ERVL 1 614 0 385 292 46 39 chr11 64753983 64754113 -84029359 - HAL1b LINE L1 -1110 238 108 1046 130 135 22 chr11 64754116 64754301 -84029171 - MLT1D LTR MaLR 0 505 300 329 310 4 92 chr11 64755447 64755728 -84027744 - MLT1K LTR MaLR -7 581 326 21 57 0 0 chr11 64756227 64756262 -84027210 + AT_rich Low_complexity Low_complexity 1 35 0 21 82 0 0 chr11 64756667 64756716 -84026756 + AT_rich Low_complexity Low_complexity 1 49 0 314 303 43 43 chr11 64756998 64757183 -84026289 + L2 LINE L2 3121 3305 -8 1140 146 5 10 chr11 64757214 64757420 -84026052 + L1MA8 LINE L1 6085 6289 -2 288 320 94 8 chr11 64757438 64757566 -84025906 + L2 LINE L2 3134 3272 0 336 127 79 0 chr11 64757769 64757832 -84025640 + MADE1 DNA Mariner 13 80 0 2286 146 77 20 chr11 64758959 64759364 -84024108 - MSTA LTR MaLR 0 428 1 250 158 0 0 chr11 64759639 64759677 -84023795 + MER75 DNA T2_type 453 490 -14 274 250 91 0 chr11 64760376 64760464 -84023008 - MER94 DNA DNA -38 96 1 1893 192 39 31 chr11 64760465 64760993 -84022479 + MLT2A2 LTR ERVL 1 542 -12 1510 198 68 10 chr11 64762250 64762543 -84020929 + MLT1A1 LTR MaLR 53 362 -3 1658 182 31 20 chr11 64762584 64762936 -84020536 + MER63B DNA MER1_type 1 356 -80 6491 21 1 1 chr11 64763159 64763982 -84019490 + L1PA3 LINE L1 5178 6000 -155 1567 128 64 15 chr11 64764087 64764353 -84019119 + AluSx SINE Alu 3 281 -31 216 254 17 0 chr11 64764353 64764406 -84019066 + (CATATA)n Simple_repeat Simple_repeat 4 57 0 2150 104 3 0 chr11 64764798 64765095 -84018377 - AluSx SINE Alu -14 298 1 2110 101 0 3 chr11 64765113 64765400 -84018072 - AluSg SINE Alu -24 286 1 22 0 0 0 chr11 64765402 64765424 -84018048 + AT_rich Low_complexity Low_complexity 1 22 0 532 135 0 0 chr11 64765428 64765502 -84017970 + AluS SINE Alu 220 293 -18 548 358 62 4 chr11 64765617 64765857 -84017615 - MIR SINE MIR 0 262 9 211 94 0 0 chr11 64766091 64766123 -84017349 - L3 LINE CR1 -74 1503 1472 2265 76 0 3 chr11 64766171 64766472 -84017000 - AluY SINE Alu -11 300 1 2211 77 3 13 chr11 64766484 64766783 -84016689 - AluSp SINE Alu -15 298 3 2101 67 7 27 chr11 64766818 64767118 -84016354 + AluY SINE Alu 1 294 -17 1238 172 90 16 chr11 64767214 64767470 -84016002 - AluJb SINE Alu -32 280 6 226 385 162 0 chr11 64767477 64767625 -84015847 - L2 LINE L2 -264 3049 2878 2198 110 0 0 chr11 64767628 64767936 -84015536 + AluSx SINE Alu 5 312 0 2141 102 3 0 chr11 64767940 64768235 -84015237 + AluSp SINE Alu 1 296 -17 282 248 44 53 chr11 64768263 64768376 -84015096 - L2 LINE L2 -531 2783 2672 236 247 299 0 chr11 64768330 64768427 -84015045 + MIR SINE MIR 124 249 -13 * 2135 95 10 3 chr11 64768438 64768744 -84014728 + AluSq SINE Alu 1 308 -5 2296 95 0 0 chr11 64768937 64769242 -84014230 + AluSq SINE Alu 1 305 -8 912 105 0 26 chr11 64769242 64769446 -84014026 + AluSg/x SINE Alu 134 333 0 414 224 51 10 chr11 64769446 64769544 -84013928 + MER5A DNA MER1_type 62 163 -26 180 0 0 0 chr11 64770764 64770784 -84012688 + (A)n Simple_repeat Simple_repeat 1 20 0 244 289 7 26 chr11 64771562 64771714 -84011758 + (CGG)n Simple_repeat Simple_repeat 2 150 0 33 0 0 0 chr11 64771795 64771828 -84011644 + GC_rich Low_complexity Low_complexity 1 33 0 2114 76 3 7 chr11 64773065 64773355 -84010117 + AluSx SINE Alu 1 289 -23 195 42 0 0 chr11 64774992 64775016 -84008456 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 2177 89 3 0 chr11 64775063 64775354 -84008118 - AluSp SINE Alu -21 292 1 357 271 100 21 chr11 64777495 64777635 -84005837 + MIR SINE MIR 53 203 -59 2237 86 0 26 chr11 64777677 64777990 -84005482 - AluY SINE Alu -6 305 1 334 86 0 52 chr11 64777998 64778056 -84005416 - Alu SINE Alu 0 300 246 2014 106 3 0 chr11 64778493 64778775 -84004697 - AluSp SINE Alu -30 283 1 1698 176 123 14 chr11 64779021 64779378 -84004094 - MSTD LTR MaLR 0 396 1 1935 135 10 6 chr11 64779527 64779838 -84003634 - AluJb SINE Alu 0 312 1 2034 103 0 30 chr11 64780765 64781066 -84002406 + AluSg SINE Alu 5 296 -14 290 232 111 50 chr11 64781332 64781409 -84002063 + MER58 DNA MER1_type 1 87 -2333 2381 57 3 0 chr11 64781409 64781706 -84001766 - AluY SINE Alu -13 298 1 290 232 111 50 chr11 64781706 64781727 -84001745 + MER58 DNA MER1_type 87 105 -2315 1868 118 16 32 chr11 64781737 64782051 -84001421 + AluSx SINE Alu 3 311 -1 464 181 0 48 chr11 64782055 64782160 -84001312 - FLAM_A SINE Alu -32 110 11 396 202 19 39 chr11 64782198 64782302 -84001170 + MER58 DNA MER1_type 2318 2419 -1 1188 168 46 95 chr11 64783633 64783937 -83999535 + AluJo SINE Alu 2 290 -12 223 239 0 0 chr11 64784681 64784727 -83998745 + GA-rich Low_complexity Low_complexity 2 47 0 2316 76 0 7 chr11 64786514 64786816 -83996656 + AluY SINE Alu 1 300 -11 345 271 152 48 chr11 64787957 64787968 -83995504 - MIR SINE MIR -10 252 244 2072 122 0 3 chr11 64787968 64788264 -83995208 + AluSx SINE Alu 1 295 -17 345 271 152 48 chr11 64788264 64788462 -83995010 - MIR SINE MIR -18 244 21 2224 104 3 0 chr11 64788561 64788860 -83994612 - AluSp SINE Alu -13 300 1 2084 110 0 0 chr11 64789467 64789767 -83993705 - AluSx SINE Alu -11 301 2 2051 93 0 0 chr11 64789879 64790159 -83993313 - AluSx SINE Alu -32 280 1 315 192 0 0 chr11 64791857 64791930 -83991542 + (CCCCAG)n Simple_repeat Simple_repeat 1 73 0 2364 85 0 31 chr11 64792742 64793061 -83990411 - AluY SINE Alu -2 309 1 1623 100 28 113 chr11 64793064 64793383 -83990089 - AluY SINE Alu -19 292 1 1567 118 0 0 chr11 64793383 64793586 -83989886 - AluSx SINE Alu -109 203 1 2563 47 7 0 chr11 64793800 64794097 -83989375 - AluY SINE Alu -4 307 9 343 283 42 48 chr11 64794285 64794451 -83989021 - MIR SINE MIR -50 212 48 1906 99 102 39 chr11 64794503 64794615 -83988857 + AluSq SINE Alu 3 106 -207 2236 112 7 0 chr11 64794615 64794910 -83988562 + AluSq SINE Alu 6 302 -11 1906 99 102 39 chr11 64794910 64795080 -83988392 + AluSq SINE Alu 106 303 -10 615 150 8 33 chr11 64795101 64795221 -83988251 + FLAM_C SINE Alu 11 127 -16 382 320 16 8 chr11 64795522 64795647 -83987825 - MIR3 SINE MIR -15 193 68 2462 67 0 7 chr11 64795832 64796132 -83987340 + AluSg SINE Alu 2 299 -11 1611 162 96 0 chr11 64796891 64797163 -83986309 - AluJb SINE Alu -14 298 1 2072 70 20 66 chr11 64797226 64797528 -83985944 - AluSp SINE Alu -25 288 1 360 87 0 58 chr11 64797545 64797614 -83985858 - Alu SINE Alu 0 301 237 1854 157 0 31 chr11 64797853 64798171 -83985301 + AluSg SINE Alu 1 308 -2 2350 95 0 0 chr11 64798177 64798473 -83984999 + AluSg SINE Alu 1 296 -14 255 215 0 13 chr11 64798608 64798687 -83984785 + L1M4 LINE L1 3876 3953 -2193 2489 57 0 7 chr11 64798698 64798996 -83984476 + AluY SINE Alu 1 296 -15 2427 77 0 3 chr11 64799015 64799312 -83984160 + AluY SINE Alu 1 296 -15 344 143 18 0 chr11 64799637 64799693 -83983779 - Tigger5 DNA MER2_type 0 2323 2267 180 0 0 0 chr11 64799807 64799827 -83983645 + (A)n Simple_repeat Simple_repeat 1 20 0 519 114 23 0 chr11 64799832 64799920 -83983552 - FLAM_A SINE Alu 0 142 53 1649 111 5 0 chr11 64799926 64800142 -83983330 + AluSq SINE Alu 29 245 -68 1972 96 0 0 chr11 64800142 64800382 -83983090 + AluSq SINE Alu 53 292 -21 393 169 0 0 chr11 64800382 64800447 -83983025 + AluSq SINE Alu 234 298 -4 2180 109 0 23 chr11 64800509 64800811 -83982661 + AluSx SINE Alu 1 295 -17 2392 52 42 0 chr11 64801211 64801497 -83981975 + AluY SINE Alu 1 298 -13 1958 104 11 15 chr11 64801757 64802025 -83981447 + AluSx SINE Alu 1 267 -45 2421 54 27 7 chr11 64802125 64802419 -83981053 - AluY SINE Alu -11 300 1 245 261 98 11 chr11 64803575 64803667 -83979805 - L2 LINE L2 0 3313 3214 603 51 0 0 chr11 64803722 64803801 -83979671 + (TTCC)n Simple_repeat Simple_repeat 3 81 0 2013 104 0 21 chr11 64803921 64804210 -83979262 + AluSg SINE Alu 1 283 -27 407 76 30 0 chr11 64804460 64804526 -83978946 - Alu SINE Alu 0 301 234 718 50 10 10 chr11 64804527 64804627 -83978845 - AluY SINE Alu -211 100 1 1070 249 62 4 chr11 64804636 64804970 -83978502 - L1ME3A LINE L1 -333 5837 5520 670 98 0 0 chr11 64804985 64805077 -83978395 - AluY SINE Alu -218 93 2 877 224 51 32 chr11 64805077 64805432 -83978040 - L1MC3 LINE L1 -91 7694 5061 974 144 7 26 chr11 64805448 64805601 -83977871 - AluSg/x SINE Alu -24 288 139 267 111 0 0 chr11 64805601 64805637 -83977835 - AluSc SINE Alu -127 172 137 229 167 0 0 chr11 64805633 64805669 -83977803 - AluJo SINE Alu -124 178 143 * 1363 125 0 0 chr11 64805669 64805845 -83977627 - AluSg SINE Alu -134 176 1 21 0 0 0 chr11 64805845 64805866 -83977606 + AT_rich Low_complexity Low_complexity 1 21 0 952 131 0 0 chr11 64805920 64806057 -83977415 - AluJo SINE Alu -171 141 5 402 215 40 178 chr11 64806058 64806089 -83977383 - L1MC3 LINE L1 -1103 5043 5009 2123 134 7 0 chr11 64806089 64806381 -83977091 + AluSx SINE Alu 1 294 -18 402 215 40 178 chr11 64806381 64806450 -83977022 - L1MC3 LINE L1 -1137 5009 4932 2135 135 0 13 chr11 64806450 64806753 -83976719 + AluSx SINE Alu 1 299 -13 402 215 40 178 chr11 64806753 64806900 -83976572 - L1MC3 LINE L1 -1214 4932 4848 2432 85 16 0 chr11 64806900 64807205 -83976267 + AluSp SINE Alu 1 310 -3 402 215 40 178 chr11 64807205 64807281 -83976191 - L1MC3 LINE L1 -1298 4848 4763 22 0 0 0 chr11 64807864 64807886 -83975586 + AT_rich Low_complexity Low_complexity 1 22 0 211 246 33 33 chr11 64810026 64810087 -83973385 - L2 LINE L2 -18 3254 3194 2155 133 0 0 chr11 64810107 64810407 -83973065 + AluSx SINE Alu 1 300 -12 875 113 0 0 chr11 64810464 64810588 -83972884 + FLAM_C SINE Alu 1 124 -9 2182 130 0 0 chr11 64810621 64810914 -83972558 + AluSc SINE Alu 2 294 -15 2582 57 0 0 chr11 64811675 64811974 -83971498 - AluY SINE Alu -12 299 1 1180 141 6 0 chr11 64812372 64812576 -83970896 - AluSg/x SINE Alu 0 314 110 1397 177 113 8 chr11 64812598 64812863 -83970609 - AluJo SINE Alu -19 293 1 2424 83 3 0 chr11 64812985 64813287 -83970185 + AluSp SINE Alu 1 303 -10 608 160 0 0 chr11 64813302 64813396 -83970076 + AluJ/FLAM SINE Alu 5 98 -214 1952 130 6 63 chr11 64813396 64813578 -83969894 - AluSg SINE Alu -13 297 139 2170 112 0 17 chr11 64813578 64813873 -83969599 - AluSx SINE Alu -22 290 1 1952 130 6 63 chr11 64813873 64814005 -83969467 - AluSg SINE Alu -171 139 1 395 344 31 8 chr11 64814240 64814368 -83969104 + MIR SINE MIR 9 139 -123 353 285 35 97 chr11 64814434 64814500 -83968972 + MER5B DNA MER1_type 2 56 -122 2180 100 7 7 chr11 64814500 64814791 -83968681 + AluSg SINE Alu 5 295 -15 353 285 35 97 chr11 64814791 64814868 -83968604 + MER5B DNA MER1_type 56 136 -42 839 160 7 14 chr11 64814875 64815002 -83968470 + FLAM_C SINE Alu 1 128 -184 1105 199 13 73 chr11 64815002 64815319 -83968153 - AluSg SINE Alu -2 298 1 839 160 7 14 chr11 64815319 64815335 -83968137 + FLAM_C SINE Alu 128 143 -169 1825 168 10 3 chr11 64815354 64815652 -83967820 + AluSx SINE Alu 1 300 -12 2187 112 13 16 chr11 64815878 64816181 -83967291 - AluSx SINE Alu -10 302 1 2812 3 0 3 chr11 64816507 64816805 -83966667 - AluYb8 SINE Alu -21 297 1 207 69 0 0 chr11 64816847 64816876 -83966596 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1124 188 0 88 chr11 64816888 64817160 -83966312 - AluJo SINE Alu -63 249 2 195 42 0 0 chr11 64817173 64817197 -83966275 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1824 170 3 0 chr11 64817199 64817482 -83965990 - AluSx SINE Alu -26 286 3 1669 90 163 0 chr11 64817484 64817729 -83965743 - AluSx SINE Alu -23 289 5 309 336 10 0 chr11 64817750 64817854 -83965618 + GA-rich Low_complexity Low_complexity 1 105 0 588 226 98 55 chr11 64818050 64818285 -83965187 + MIR SINE MIR 18 262 0 2141 118 3 3 chr11 64818365 64818662 -83964810 + AluSg SINE Alu 1 297 -13 1202 133 6 0 chr11 64818662 64818835 -83964637 + AluSg/x SINE Alu 132 305 -5 228 163 0 82 chr11 64818835 64818884 -83964588 - L2 LINE L2 -31 3282 3238 1941 129 7 4 chr11 64818887 64819191 -83964281 - AluSx SINE Alu 0 305 1 24 32 0 0 chr11 64819216 64819247 -83964225 + AT_rich Low_complexity Low_complexity 1 31 0 591 156 0 0 chr11 64819251 64819347 -83964125 - AluJ/FLAM SINE Alu -212 100 5 282 191 276 0 chr11 64819439 64819544 -83963928 + MIR3 SINE MIR 54 187 -21 389 370 87 5 chr11 64819572 64819780 -83963692 + MIR SINE MIR 6 230 -32 388 254 118 0 chr11 64819824 64819934 -83963538 + MIR SINE MIR 28 150 -112 2155 123 3 3 chr11 64819934 64820234 -83963238 + AluSx SINE Alu 1 300 -12 2382 84 3 0 chr11 64820244 64820541 -83962931 + AluSp SINE Alu 1 298 -15 328 211 116 32 chr11 64820559 64820654 -83962818 + L1MC5 LINE L1 7829 7931 -30 2622 47 0 0 chr11 64820727 64821027 -83962445 - AluY SINE Alu 0 311 12 211 211 0 0 chr11 64821132 64821170 -83962302 + CT-rich Low_complexity Low_complexity 4 41 0 2178 102 30 13 chr11 64821192 64821496 -83961976 - AluSg SINE Alu -1 309 1 2151 120 3 3 chr11 64821501 64821800 -83961672 - AluSp SINE Alu -14 299 1 364 270 103 70 chr11 64821842 64822121 -83961351 - L2 LINE L2 -212 3060 2781 2662 52 0 0 chr11 64822121 64822428 -83961044 - AluY SINE Alu -4 307 1 364 270 103 70 chr11 64822428 64822494 -83960978 - L2 LINE L2 -491 2781 2719 187 250 60 24 chr11 64822497 64822581 -83960891 - L2 LINE L2 -1384 1930 1844 374 98 0 0 chr11 64822803 64822854 -83960618 + AluSg/x SINE Alu 83 133 -167 1537 158 86 11 chr11 64822854 64823132 -83960340 + AluSc SINE Alu 1 299 -10 1994 143 0 13 chr11 64823292 64823600 -83959872 + AluSx SINE Alu 1 304 -8 270 0 0 0 chr11 64823712 64823742 -83959730 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 1491 92 13 38 chr11 64823748 64823987 -83959485 + AluSg SINE Alu 1 233 -77 385 304 35 17 chr11 64826844 64826959 -83956513 + MIR SINE MIR 144 260 -2 1732 147 11 8 chr11 64826968 64827234 -83956238 - AluSg SINE Alu -14 296 30 1588 121 0 0 chr11 64827243 64827458 -83956014 - AluSg/x SINE Alu -5 305 91 2219 117 0 0 chr11 64827702 64828000 -83955472 + AluSq SINE Alu 1 298 -15 2142 115 7 0 chr11 64828563 64828859 -83954613 + AluSq SINE Alu 1 298 -15 2232 84 24 0 chr11 64828868 64829164 -83954308 + AluSx SINE Alu 1 303 -9 262 316 22 29 chr11 64829488 64829627 -83953845 + MIR SINE MIR 119 256 -6 2250 108 10 0 chr11 64830967 64831263 -83952209 - AluSg SINE Alu -11 299 1 1932 161 3 3 chr11 64831565 64831857 -83951615 + AluJo SINE Alu 1 292 -20 381 237 13 0 chr11 64833300 64833376 -83950096 + AluJ/FLAM SINE Alu 1 77 -225 604 185 85 15 chr11 64833380 64833510 -83949962 + FRAM SINE Alu 16 154 -22 1090 166 11 0 chr11 64833526 64833701 -83949771 + FRAM SINE Alu 1 169 -7 299 279 16 50 chr11 64835058 64835250 -83948222 + CT-rich Low_complexity Low_complexity 1 185 0 2375 101 3 22 chr11 64835837 64836155 -83947317 - AluSx SINE Alu 0 312 1 1225 199 62 41 chr11 64836156 64836447 -83947025 - AluSx SINE Alu -15 297 1 342 330 26 0 chr11 64836490 64836605 -83946867 - L2 LINE L2 -6 3307 3190 1533 167 4 23 chr11 64836645 64836908 -83946564 - AluJb SINE Alu -54 258 1 402 228 71 16 chr11 64836913 64837040 -83946432 + MIR SINE MIR 129 262 0 2273 52 3 21 chr11 64837070 64837356 -83946116 + AluY SINE Alu 1 281 -30 1579 202 21 3 chr11 64837484 64837771 -83945701 + AluJo SINE Alu 3 294 -18 2208 122 3 0 chr11 64837773 64838069 -83945403 + AluSx SINE Alu 1 297 -15 2490 68 0 0 chr11 64838069 64838361 -83945111 + AluY SINE Alu 1 292 -19 267 276 46 0 chr11 64838365 64838452 -83945020 - MIR SINE MIR -92 170 80 1932 161 3 3 chr11 64842270 64842562 -83940910 + AluJo SINE Alu 1 292 -20 416 233 0 0 chr11 64844007 64844088 -83939384 + AluJ/FLAM SINE Alu 2 81 -231 * 712 164 86 8 chr11 64844087 64844215 -83939257 + AluJo/FRAM SINE Alu 152 289 -23 1159 155 28 0 chr11 64844227 64844408 -83939064 + AluJo SINE Alu 120 305 -7 299 279 16 50 chr11 64845765 64845957 -83937515 + CT-rich Low_complexity Low_complexity 1 185 0 2375 101 3 22 chr11 64846544 64846862 -83936610 - AluSx SINE Alu 0 312 1 1981 128 20 17 chr11 64846863 64847160 -83936312 - AluSx SINE Alu -14 298 1 1949 156 3 22 chr11 64847274 64847588 -83935884 - AluJb SINE Alu -4 308 1 2156 126 3 3 chr11 64847910 64848219 -83935253 - AluSg SINE Alu -1 309 1 1004 120 0 0 chr11 64848223 64848356 -83935116 - FLAM_C SINE Alu -10 133 1 434 312 103 21 chr11 64849288 64849522 -83933950 + MIR SINE MIR 8 260 -2 2323 98 0 0 chr11 64849523 64849810 -83933662 - AluSc SINE Alu -22 287 1 284 213 226 85 chr11 64850195 64850359 -83933113 + MIR SINE MIR 10 196 -66 955 169 13 0 chr11 64850822 64850976 -83932496 - AluJo/FRAM SINE Alu -11 301 146 2220 102 0 13 chr11 64850976 64851289 -83932183 - AluY SINE Alu -1 310 2 330 243 36 0 chr11 64851315 64851426 -83932046 + L1M4 LINE L1 3886 4000 -2146 2375 48 42 7 chr11 64852816 64853105 -83930367 - AluY SINE Alu -12 299 1 2358 63 0 7 chr11 64853262 64853548 -83929924 - AluY SINE Alu -27 284 1 310 291 50 72 chr11 64853559 64853920 -83929552 - L1M4 LINE L1 -2192 3954 3602 677 169 39 15 chr11 64853950 64854080 -83929392 - FLAM_C SINE Alu 0 133 1 2382 85 0 7 chr11 64854128 64854434 -83929038 - AluSg SINE Alu -6 304 1 2269 110 3 0 chr11 64854478 64854777 -83928695 - AluSq SINE Alu -13 300 1 191 259 74 37 chr11 64854986 64855067 -83928405 + L2 LINE L2 3222 3305 -8 182 196 65 22 chr11 64857007 64857053 -83926419 - MIR SINE MIR -92 170 123 2428 84 3 0 chr11 64857064 64857361 -83926111 + AluSx SINE Alu 2 299 -13 2097 67 0 4 chr11 64857365 64857620 -83925852 + AluY SINE Alu 1 254 -57 596 127 111 63 chr11 64859381 64859507 -83923965 - FLAM_C SINE Alu 0 133 2 354 80 0 0 chr11 64859974 64860024 -83923448 - Alu SINE Alu -10 290 241 199 283 189 9 chr11 64860036 64860142 -83923330 - MIR SINE MIR -57 205 81 1920 90 54 7 chr11 64860207 64860486 -83922986 - AluY SINE Alu -19 292 1 2252 113 0 3 chr11 64862002 64862312 -83921160 - AluSc SINE Alu 0 309 1 1311 161 142 19 chr11 64862367 64862634 -83920838 + AluJb SINE Alu 3 302 0 2206 113 0 7 chr11 64862637 64862937 -83920535 + AluSg SINE Alu 1 298 -12 2298 99 3 0 chr11 64862943 64863235 -83920237 + AluSx SINE Alu 1 293 -19 1923 132 71 0 chr11 64863246 64863527 -83919945 + AluSx SINE Alu 3 303 -9 999 94 8 0 chr11 64863632 64863759 -83919713 - AluSq/x SINE Alu -184 128 1 2116 105 48 10 chr11 64863799 64864094 -83919378 - AluSq SINE Alu -7 306 1 407 169 0 101 chr11 64864311 64864400 -83919072 - AluJb SINE Alu -30 282 203 2447 65 0 7 chr11 64864472 64864778 -83918694 - AluY SINE Alu -7 304 1 1385 143 170 30 chr11 64864890 64865155 -83918317 - AluJb SINE Alu -10 302 1 252 0 0 0 chr11 64865821 64865849 -83917623 + (T)n Simple_repeat Simple_repeat 1 28 0 2197 104 30 7 chr11 64865852 64866151 -83917321 - AluSg SINE Alu -4 306 1 937 133 7 0 chr11 64866151 64866286 -83917186 - AluJb SINE Alu -176 136 1 224 367 72 0 chr11 64866489 64866628 -83916844 + L2 LINE L2 2906 3054 -218 214 203 16 109 chr11 64866783 64866833 -83916639 - MIR SINE MIR 0 262 209 414 0 0 0 chr11 64866833 64866879 -83916593 + (TG)n Simple_repeat Simple_repeat 1 46 0 2069 113 7 3 chr11 64866882 64867164 -83916308 - AluSq SINE Alu -30 283 1 214 203 16 109 chr11 64867164 64867237 -83916235 - MIR SINE MIR -55 207 147 2254 119 6 10 chr11 64867258 64867569 -83915903 + AluSq SINE Alu 1 310 -3 2337 104 3 3 chr11 64867595 64867902 -83915570 + AluSg SINE Alu 1 307 -3 831 233 51 23 chr11 64868010 64868274 -83915198 - LTR24 LTR ERV1 0 467 282 1514 130 20 20 chr11 64868274 64868521 -83914951 - AluSg SINE Alu -8 302 56 831 233 51 23 chr11 64868521 64868573 -83914899 - LTR24 LTR ERV1 -185 282 233 23 0 0 0 chr11 64868575 64868598 -83914874 + GC_rich Low_complexity Low_complexity 1 23 0 1381 109 0 0 chr11 64868752 64868945 -83914527 + AluY SINE Alu 119 311 0 1078 182 33 0 chr11 64868947 64869128 -83914344 + AluJo SINE Alu 109 295 -17 192 77 0 0 chr11 64869438 64869464 -83914008 + (T)n Simple_repeat Simple_repeat 1 26 0 303 194 30 15 chr11 64869564 64869631 -83913841 + MIR3 SINE MIR 117 184 -24 210 71 0 0 chr11 64871293 64871321 -83912151 + (CGGGG)n Simple_repeat Simple_repeat 5 32 0 266 296 14 0 chr11 64875573 64875644 -83907828 - MIR3 SINE MIR -13 195 124 22 0 0 0 chr11 64875953 64875975 -83907497 + AT_rich Low_complexity Low_complexity 1 22 0 2376 61 7 0 chr11 64876025 64876329 -83907143 + AluSq SINE Alu 1 306 0 2084 110 14 3 chr11 64876738 64877029 -83906443 + AluSx SINE Alu 1 294 -18 735 239 68 13 chr11 64877041 64877275 -83906197 - L1MC4 LINE L1 -967 7075 6829 1772 139 29 23 chr11 64877346 64877521 -83905951 - AluJb SINE Alu 0 312 140 285 29 0 0 chr11 64877521 64877555 -83905917 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2136 91 0 21 chr11 64877555 64877842 -83905630 - AluSg SINE Alu -29 281 1 2155 105 14 10 chr11 64877842 64878136 -83905336 - AluSg SINE Alu -15 295 1 1772 139 29 23 chr11 64878136 64878268 -83905204 - AluJb SINE Alu -171 141 1 2149 138 0 7 chr11 64878315 64878613 -83904859 + AluSq SINE Alu 1 296 -17 2010 140 0 13 chr11 64878629 64878929 -83904543 + AluSc SINE Alu 3 298 -11 201 94 0 0 chr11 64878977 64879009 -83904463 + L3 LINE CR1 1472 1503 -74 511 358 62 4 chr11 64879243 64879483 -83903989 + MIR SINE MIR 9 262 0 508 135 0 0 chr11 64879598 64879672 -83903800 - AluSg/x SINE Alu -18 292 219 22 0 0 0 chr11 64879676 64879698 -83903774 + AT_rich Low_complexity Low_complexity 1 22 0 2265 110 0 3 chr11 64879700 64879999 -83903473 + AluSg SINE Alu 1 298 -12 2273 103 3 0 chr11 64880005 64880297 -83903175 + AluSx SINE Alu 1 293 -19 1923 132 71 0 chr11 64880308 64880589 -83902883 + AluSx SINE Alu 3 303 -9 802 128 9 0 chr11 64880661 64880770 -83902702 - FLAM_C SINE Alu -33 110 1 2364 88 10 0 chr11 64880886 64881182 -83902290 - AluSp SINE Alu -14 299 1 382 215 38 0 chr11 64881194 64881273 -83902199 + L2 LINE L2 3229 3310 -3 200 226 0 12 chr11 64881851 64881935 -83901537 + (TA)n Simple_repeat Simple_repeat 2 84 0 2191 107 17 0 chr11 64881944 64882234 -83901238 + AluSx SINE Alu 1 295 -17 2368 97 0 7 chr11 64882283 64882592 -83900880 + AluY SINE Alu 1 307 -4 2207 106 0 7 chr11 64883118 64883444 -83900028 + AluSg SINE Alu 3 326 0 1235 138 0 0 chr11 64884174 64884348 -83899124 + AluSx SINE Alu 1 174 -138 870 152 0 29 chr11 64884375 64884513 -83898959 + AluJo SINE Alu 1 134 -178 2359 76 10 0 chr11 64884513 64884804 -83898668 + AluY SINE Alu 1 294 -17 2292 79 0 33 chr11 64884825 64885128 -83898344 - AluY SINE Alu -18 293 1 1623 100 28 113 chr11 64885131 64885450 -83898022 - AluY SINE Alu -19 292 1 1567 118 0 0 chr11 64885450 64885653 -83897819 - AluSx SINE Alu -109 203 1 231 36 0 0 chr11 64885864 64885892 -83897580 + (T)n Simple_repeat Simple_repeat 1 28 0 1963 144 0 31 chr11 64886035 64886355 -83897117 - AluSg SINE Alu 0 310 1 360 87 0 58 chr11 64886594 64886663 -83896809 + Alu SINE Alu 237 301 0 2096 66 20 66 chr11 64886680 64886983 -83896489 + AluSp SINE Alu 1 289 -24 1611 162 96 0 chr11 64887047 64887319 -83896153 + AluJb SINE Alu 1 298 -14 2400 80 0 7 chr11 64888078 64888380 -83895092 - AluY SINE Alu -11 300 1 1070 249 62 4 chr11 64888389 64888723 -83894749 - L1ME3A LINE L1 -333 5837 5520 670 98 0 0 chr11 64888738 64888830 -83894642 - AluY SINE Alu -218 93 2 877 224 51 32 chr11 64888830 64889185 -83894287 - L1MC3 LINE L1 -91 7694 5061 974 144 7 26 chr11 64889201 64889354 -83894118 - AluSg/x SINE Alu -24 288 139 267 111 0 0 chr11 64889354 64889390 -83894082 - AluJo SINE Alu -128 174 139 229 167 0 0 chr11 64889386 64889422 -83894050 - AluJo SINE Alu -124 178 143 * 1363 125 0 0 chr11 64889422 64889598 -83893874 - AluSg SINE Alu -134 176 1 21 0 0 0 chr11 64889598 64889619 -83893853 + AT_rich Low_complexity Low_complexity 1 21 0 952 131 0 0 chr11 64889673 64889810 -83893662 - AluJo SINE Alu -171 141 5 404 224 124 144 chr11 64889811 64889842 -83893630 - L1MC3 LINE L1 -1103 5043 5013 2123 134 7 0 chr11 64889842 64890134 -83893338 + AluSx SINE Alu 1 294 -18 404 224 124 144 chr11 64890134 64890203 -83893269 - L1MC3 LINE L1 -1133 5013 4944 2135 135 0 13 chr11 64890203 64890506 -83892966 + AluSx SINE Alu 1 299 -13 404 224 124 144 chr11 64890506 64890653 -83892819 - L1MC3 LINE L1 -1202 4944 4804 2417 88 16 0 chr11 64890653 64890959 -83892513 + AluSp SINE Alu 1 311 -2 404 224 124 144 chr11 64890959 64891111 -83892361 - L1MC3 LINE L1 -1342 4804 4650 22 0 0 0 chr11 64891617 64891639 -83891833 + AT_rich Low_complexity Low_complexity 1 22 0 211 246 33 33 chr11 64893781 64893842 -83889630 - L2 LINE L2 -18 3254 3194 2155 133 0 0 chr11 64893862 64894162 -83889310 + AluSx SINE Alu 1 300 -12 958 114 0 0 chr11 64894219 64894342 -83889130 + FLAM_C SINE Alu 1 123 -20 882 116 0 8 chr11 64894375 64894496 -83888976 + AluSc SINE Alu 2 121 -188 310 298 24 32 chr11 64894654 64894778 -83888694 - L2 LINE L2 -223 3090 2968 450 301 156 30 chr11 64897411 64897523 -83885949 - L2 LINE L2 -120 3193 3097 2305 95 13 0 chr11 64897523 64897829 -83885643 + AluSx SINE Alu 1 310 -2 450 301 156 30 chr11 64897829 64898137 -83885335 - L2 LINE L2 -216 3097 2730 203 276 49 65 chr11 64898162 64898276 -83885196 - MIR SINE MIR -141 121 8 2216 104 3 10 chr11 64898276 64898585 -83884887 - AluSq SINE Alu -6 307 1 2258 114 0 0 chr11 64901275 64901583 -83881889 - AluSx SINE Alu -4 308 1 2335 78 3 3 chr11 64901597 64901905 -83881567 - AluY SINE Alu -3 308 1 1013 153 0 12 chr11 64901967 64902130 -83881342 - FRAM SINE Alu -18 158 1 1909 129 14 10 chr11 64902164 64902459 -83881013 + AluJo SINE Alu 1 296 -16 832 211 29 61 chr11 64902464 64902705 -83880767 + AluJo SINE Alu 50 283 -25 324 0 0 0 chr11 64902705 64902741 -83880731 + (CA)n Simple_repeat Simple_repeat 1 36 0 2223 99 3 3 chr11 64902826 64903128 -83880344 - AluSg1 SINE Alu -7 302 1 392 158 258 8 chr11 64903399 64903519 -83879953 + MIR SINE MIR 113 262 0 2289 76 3 3 chr11 64905314 64905617 -83877855 + AluY SINE Alu 1 303 -8 200 383 12 0 chr11 64905687 64905768 -83877704 + MIR3 SINE MIR 102 183 -25 780 298 52 12 chr11 64908534 64908782 -83874690 - MIR SINE MIR 0 262 5 1059 85 0 0 chr11 64909178 64909319 -83874153 + AluSg/x SINE Alu 133 273 -37 263 323 100 8 chr11 64909346 64909476 -83873996 + MIR SINE MIR 51 192 -16 281 278 0 0 chr11 64911270 64911342 -83872130 + MIR SINE MIR 73 144 -118 1367 103 44 10 chr11 64911823 64912026 -83871446 - AluSx SINE Alu -12 298 89 420 106 0 0 chr11 64912035 64912101 -83871371 - Alu SINE Alu -5 307 242 852 98 0 0 chr11 64912101 64912213 -83871259 - AluSx SINE Alu -201 112 1 201 39 0 0 chr11 64913326 64913352 -83870120 + (A)n Simple_repeat Simple_repeat 1 26 0 234 0 0 0 chr11 64913466 64913492 -83869980 + (A)n Simple_repeat Simple_repeat 1 26 0 23 0 0 0 chr11 64913586 64913609 -83869863 + AT_rich Low_complexity Low_complexity 1 23 0 2282 58 0 0 chr11 64916933 64917209 -83866263 + AluY SINE Alu 1 276 -35 189 94 0 0 chr11 64917212 64917244 -83866228 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 347 200 137 0 chr11 64917935 64918030 -83865442 - MER91C DNA MER1_type -21 119 12 203 247 12 49 chr11 64919534 64919615 -83863857 + GA-rich Low_complexity Low_complexity 3 80 0 2080 116 20 0 chr11 64921894 64922210 -83861262 - AluSx SINE Alu 0 312 1 389 319 47 4 chr11 64923891 64924043 -83859429 - MIR SINE MIR -60 148 3 2310 97 0 0 chr11 64924107 64924407 -83859065 + AluSx SINE Alu 1 300 -12 1499 129 0 0 chr11 64924682 64924892 -83858580 + AluSx SINE Alu 1 210 -102 1338 112 48 115 chr11 64924892 64925204 -83858268 + AluYb8 SINE Alu 8 298 -20 2198 82 0 41 chr11 64925207 64925526 -83857946 + AluY SINE Alu 1 306 -5 315 192 0 0 chr11 64926338 64926411 -83857061 + (CTGGGG)n Simple_repeat Simple_repeat 1 73 0 2086 87 0 0 chr11 64928111 64928387 -83855085 + AluSx SINE Alu 1 276 -36 2072 125 0 7 chr11 64928503 64928807 -83854665 + AluSx SINE Alu 2 303 -9 1982 115 10 32 chr11 64928809 64929122 -83854350 + AluSg SINE Alu 1 306 -4 2163 118 0 3 chr11 64929144 64929448 -83854024 + AluSg SINE Alu 1 303 -7 2240 83 7 3 chr11 64930118 64930418 -83853054 - AluSp SINE Alu -12 301 1 200 234 452 8 chr11 64930464 64930588 -83852884 - MIR SINE MIR -75 187 9 21 0 0 0 chr11 64931252 64931273 -83852199 + GC_rich Low_complexity Low_complexity 1 21 0 212 236 18 0 chr11 64931303 64931358 -83852114 + (CCG)n Simple_repeat Simple_repeat 1 56 0 213 328 0 15 chr11 64931739 64931806 -83851666 - MIR SINE MIR -57 151 86 343 319 80 52 chr11 64931884 64932117 -83851355 + MIR SINE MIR 2 245 -17 2129 82 7 0 chr11 64932117 64932426 -83851046 + AluSx SINE Alu 1 311 0 343 319 80 52 chr11 64932426 64932442 -83851030 + MIR SINE MIR 245 259 -3 460 328 175 26 chr11 64932444 64932673 -83850799 + L1MC4 LINE L1 7759 8021 -21 645 195 65 16 chr11 64932687 64932810 -83850662 + AluJo SINE Alu 17 145 -167 2062 116 0 7 chr11 64932810 64933144 -83850328 + AluSg SINE Alu 1 332 0 247 226 36 44 chr11 64933162 64933248 -83850224 - MIR SINE MIR -95 113 51 481 255 0 0 chr11 64933270 64933368 -83850104 - AluSx SINE Alu -11 301 204 276 214 0 0 chr11 64933419 64933475 -83849997 - FAM SINE Alu -66 109 54 1587 66 52 5 chr11 64933480 64933693 -83849779 - AluSx SINE Alu -89 223 1 2376 53 40 0 chr11 64934448 64934747 -83848725 + AluY SINE Alu 1 311 0 351 255 96 21 chr11 64934821 64934915 -83848557 - L1MC5 LINE L1 -32 7929 7829 2265 84 3 0 chr11 64934933 64935230 -83848242 - AluSp SINE Alu -15 298 1 2039 127 3 3 chr11 64935240 64935540 -83847932 - AluSx SINE Alu -12 300 1 390 266 116 5 chr11 64935540 64935669 -83847803 - MIR SINE MIR -62 146 14 409 372 88 4 chr11 64935676 64935902 -83847570 - MIR SINE MIR -12 250 6 299 202 266 0 chr11 64935926 64936035 -83847437 - MIR3 SINE MIR -17 191 54 626 175 63 24 chr11 64936127 64936253 -83847219 + FLAM_C SINE Alu 5 135 -8 1351 207 3 19 chr11 64936283 64936592 -83846880 + AluSx SINE Alu 1 304 -8 270 0 0 0 chr11 64936704 64936734 -83846738 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 2239 97 0 3 chr11 64936740 64937039 -83846433 + AluSg SINE Alu 1 298 -12 240 308 0 0 chr11 64939390 64939455 -83844017 + L2 LINE L2 3207 3271 -1 1062 65 14 0 chr11 64940490 64940629 -83842843 - AluSq SINE Alu -15 298 158 2376 43 13 13 chr11 64940687 64940990 -83842482 + AluY SINE Alu 6 308 -3 233 170 0 0 chr11 64941160 64941207 -83842265 - AluSq SINE Alu -6 294 248 554 171 99 66 chr11 64941207 64941359 -83842113 - AluSq SINE Alu -156 157 1 1262 102 5 60 chr11 64941387 64941521 -83841951 + AluY SINE Alu 1 120 -191 2235 92 0 3 chr11 64941521 64941826 -83841646 + AluSc SINE Alu 1 304 -5 1262 102 5 60 chr11 64941826 64941906 -83841566 + AluY SINE Alu 120 203 -108 1655 27 0 0 chr11 64942108 64942294 -83841178 - U2 snRNA snRNA -2 186 1 283 370 80 6 chr11 64942718 64942880 -83840592 + MIR SINE MIR 14 187 -75 1127 218 77 45 chr11 64943131 64943507 -83839965 - LTR65 LTR ERV1 -97 572 185 2253 117 0 0 chr11 64943606 64943913 -83839559 + AluSx SINE Alu 1 307 -5 1787 109 68 3 chr11 64943913 64944224 -83839248 - THE1C LTR MaLR -44 331 1 391 285 43 37 chr11 64944225 64944415 -83839057 - MIR SINE MIR -67 141 6 183 191 0 0 chr11 64944424 64944466 -83839006 + MIR SINE MIR 95 136 -72 283 331 50 20 chr11 64944927 64945130 -83838342 - MIR SINE MIR -50 212 1 2156 125 27 0 chr11 64945394 64945690 -83837782 + AluSx SINE Alu 2 305 -7 2120 141 0 6 chr11 64945691 64946003 -83837469 + AluSg SINE Alu 1 310 0 1293 106 6 0 chr11 64946003 64946173 -83837299 + AluSq SINE Alu 134 304 -9 248 279 32 71 chr11 64946269 64946423 -83837049 - L2 LINE L2 -189 3083 2936 1776 157 10 45 chr11 64947848 64948021 -83835451 - AluSq SINE Alu -12 301 142 2608 51 0 0 chr11 64948021 64948317 -83835155 - AluY SINE Alu -15 296 1 1776 157 10 45 chr11 64948317 64948455 -83835017 - AluSq SINE Alu -171 142 1 1150 155 0 0 chr11 64948482 64948656 -83834816 - AluSx SINE Alu -138 174 1 2092 121 0 7 chr11 64949388 64949714 -83833758 - AluSg SINE Alu 0 326 3 2223 84 0 11 chr11 64950243 64950552 -83832920 - AluY SINE Alu 0 306 1 1801 88 188 0 chr11 64950552 64950872 -83832600 - LTR19A LTR ERV1 -106 380 1 2148 124 3 0 chr11 64950922 64951247 -83832225 + AluSx SINE Alu 1 312 0 1307 176 14 18 chr11 64951317 64951539 -83831933 - AluJo SINE Alu -91 221 1 378 170 190 40 chr11 64951661 64951761 -83831711 - MIR SINE MIR -33 229 115 626 93 10 0 chr11 64951781 64951878 -83831594 - AluY SINE Alu 0 311 214 2318 101 10 0 chr11 64952010 64952307 -83831165 - AluSp SINE Alu -13 300 1 200 226 0 12 chr11 64952316 64952400 -83831072 + (TA)n Simple_repeat Simple_repeat 1 83 0 382 215 38 0 chr11 64952978 64953057 -83830415 - L2 LINE L2 -3 3310 3229 2364 88 10 0 chr11 64953069 64953365 -83830107 + AluSp SINE Alu 1 299 -14 802 128 9 0 chr11 64953481 64953590 -83829882 + FLAM_C SINE Alu 1 110 -33 246 189 19 0 chr11 64953663 64953716 -83829756 - AluSc SINE Alu 0 299 246 2114 117 3 10 chr11 64953912 64954212 -83829260 - AluY SINE Alu -13 298 1 1252 141 157 4 chr11 64955648 64955903 -83827569 + AluJo SINE Alu 1 294 -18 328 290 75 0 chr11 64956721 64956814 -83826658 + MIR SINE MIR 50 149 -113 214 277 153 0 chr11 64956937 64957043 -83826429 + MIR SINE MIR 38 163 -45 965 220 108 9 chr11 64957389 64957621 -83825851 + AluJb SINE Alu 1 255 -57 440 183 191 8 chr11 64957684 64957810 -83825662 + MIR SINE MIR 103 251 -11 1905 109 8 11 chr11 64957816 64958083 -83825389 + AluSx SINE Alu 39 304 -8 2332 87 13 0 chr11 64958921 64959220 -83824252 - AluY SINE Alu -8 303 1 257 298 12 0 chr11 64959304 64959388 -83824084 + MIR SINE MIR 170 254 -8 246 33 0 0 chr11 64959389 64959447 -83824025 - AluSp/q SINE Alu 0 311 254 545 28 14 0 chr11 64959475 64959546 -83823926 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 931 382 10 54 chr11 64959547 64959843 -83823629 - AluSq SINE Alu -18 285 3 2348 78 3 0 chr11 64960007 64960324 -83823148 - AluSq SINE Alu 0 318 1 445 269 153 22 chr11 64960715 64960990 -83822482 - L3 LINE CR1 -3 1574 1264 250 71 0 95 chr11 64960990 64961032 -83822440 - tRNA-Gln-CAG tRNA tRNA -37 38 1 1574 216 56 40 chr11 64961151 64961650 -83821822 - L2 LINE L2 0 3313 2807 839 160 7 14 chr11 64961845 64961972 -83821500 + FLAM_C SINE Alu 1 128 -184 1825 131 10 58 chr11 64961972 64962285 -83821187 - AluSg SINE Alu -12 298 1 839 160 7 14 chr11 64962285 64962301 -83821171 + FLAM_C SINE Alu 128 143 -169 1874 166 10 0 chr11 64962320 64962616 -83820856 + AluSx SINE Alu 1 299 -13 1852 154 10 20 chr11 64962840 64963145 -83820327 - AluSx SINE Alu -10 302 1 21 0 0 0 chr11 64963348 64963369 -83820103 + AT_rich Low_complexity Low_complexity 1 21 0 2570 80 0 3 chr11 64963557 64963871 -83819601 - AluSq SINE Alu 0 313 1 2078 124 7 7 chr11 64963871 64964170 -83819302 - AluSq SINE Alu -14 299 1 270 0 0 0 chr11 64964176 64964206 -83819266 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 2065 107 0 4 chr11 64964356 64964626 -83818846 - AluSx SINE Alu -43 269 1 259 302 24 40 chr11 64964929 64965055 -83818417 - L2 LINE L2 0 3272 3149 302 279 152 38 chr11 64965293 64965451 -83818021 + MER5A DNA MER1_type 14 189 0 216 292 56 0 chr11 64965891 64965963 -83817509 + MIR SINE MIR 40 115 -93 724 167 0 0 chr11 64966067 64966181 -83817291 - FLAM_C SINE Alu -28 115 2 2270 94 3 0 chr11 64966244 64966532 -83816940 + AluY SINE Alu 1 289 -22 2499 81 3 0 chr11 64966537 64966844 -83816628 + AluSc SINE Alu 1 308 -1 625 165 25 8 chr11 64967243 64967364 -83816108 + FLAM_C SINE Alu 2 124 -19 1999 138 0 7 chr11 64967382 64967672 -83815800 + AluSg SINE Alu 1 288 -22 1904 165 3 16 chr11 64967716 64968025 -83815447 + AluJo SINE Alu 1 305 -7 2414 84 3 0 chr11 64968064 64968360 -83815112 - AluSg SINE Alu -13 297 1 431 179 13 0 chr11 64968692 64968770 -83814702 + Tigger5 DNA MER2_type 1 79 -2244 2678 58 0 0 chr11 64968981 64969289 -83814183 - AluY SINE Alu -3 308 1 185 304 76 63 chr11 64970421 64970579 -83812893 + L2 LINE L2 2903 3062 -210 946 102 0 0 chr11 64970673 64970801 -83812671 + AluSg/x SINE Alu 183 310 -2 411 187 0 0 chr11 64970974 64971049 -83812423 + 7SLRNA srpRNA srpRNA 6 80 -240 2368 83 0 29 chr11 64971358 64971671 -83811801 - AluY SINE Alu -7 304 1 2096 123 7 10 chr11 64971671 64971963 -83811509 - AluSx SINE Alu -21 291 1 1572 182 123 14 chr11 64972209 64972566 -83810906 - MSTD LTR MaLR 0 396 1 1994 174 0 3 chr11 64972748 64973059 -83810413 - AluSx SINE Alu -2 310 1 2070 117 0 24 chr11 64973101 64973399 -83810073 + AluSg1 SINE Alu 1 291 -18 2410 75 27 0 chr11 64973515 64973810 -83809662 - AluSq SINE Alu -10 303 1 1548 86 0 0 chr11 64974469 64974655 -83808817 - AluSq SINE Alu -127 186 1 220 174 43 0 chr11 64975813 64975859 -83807613 - L2 LINE L2 -5 3267 3220 261 287 35 0 chr11 64975897 64975984 -83807488 + MIR3 SINE MIR 116 205 -3 212 356 0 0 chr11 64977058 64977103 -83806369 + G-rich Low_complexity Low_complexity 1 45 0 2226 126 3 0 chr11 64980083 64980393 -83803079 - AluSx SINE Alu 0 312 2 2012 124 7 3 chr11 64980445 64980727 -83802745 - AluSg SINE Alu -20 290 8 382 320 16 8 chr11 64980917 64981042 -83802430 + MIR3 SINE MIR 68 193 -15 615 150 8 33 chr11 64981343 64981463 -83802009 - FLAM_C SINE Alu -16 127 11 1888 95 102 42 chr11 64981484 64981655 -83801817 - AluSq SINE Alu -10 303 107 2236 112 7 0 chr11 64981655 64981950 -83801522 - AluSq SINE Alu -11 302 6 1888 95 102 42 chr11 64981950 64982062 -83801410 - AluSq SINE Alu -206 107 3 343 283 42 48 chr11 64982114 64982280 -83801192 + MIR SINE MIR 48 212 -50 2379 50 7 0 chr11 64982468 64982745 -83800727 + AluY SINE Alu 9 287 -24 2559 57 0 3 chr11 64983120 64983417 -83800055 - AluY SINE Alu -15 296 1 2337 115 0 10 chr11 64983444 64983757 -83799715 - AluSq SINE Alu -3 310 1 216 194 15 45 chr11 64983778 64983845 -83799627 + MIR SINE MIR 147 211 -51 2176 88 30 13 chr11 64983852 64984157 -83799315 + AluY SINE Alu 1 310 -1 2375 68 30 0 chr11 64984245 64984541 -83798931 - AluY SINE Alu -6 305 1 1126 66 0 0 chr11 64984608 64984745 -83798727 + AluY SINE Alu 172 308 -3 242 188 42 0 chr11 64984837 64984885 -83798587 - L2 LINE L2 -17 3255 3206 495 232 96 40 chr11 64985693 64985870 -83797602 - MIR SINE MIR -5 257 71 2371 79 3 28 chr11 64985942 64986259 -83797213 + AluY SINE Alu 1 309 -2 1242 92 0 6 chr11 64986273 64986436 -83797036 + AluJb SINE Alu 136 297 -15 390 192 19 39 chr11 64987748 64987852 -83795620 - MER58 DNA MER1_type -1 2419 2318 441 181 0 48 chr11 64987891 64987996 -83795476 + FLAM_A SINE Alu 11 110 -32 2101 127 13 7 chr11 64988007 64988314 -83795158 - AluSx SINE Alu -1 311 3 255 241 126 35 chr11 64988327 64988346 -83795126 - MER58 DNA MER1_type -120 95 79 2508 65 3 10 chr11 64988346 64988653 -83794819 + AluY SINE Alu 1 305 -6 255 241 126 35 chr11 64988653 64988720 -83794752 - MER58 DNA MER1_type -136 79 1 2095 109 7 13 chr11 64988981 64989284 -83794188 - AluSc SINE Alu -8 301 1 667 143 0 27 chr11 64989388 64989500 -83793972 - FLAM_C SINE Alu -14 129 21 2221 114 0 3 chr11 64989536 64989834 -83793638 + AluY SINE Alu 1 297 -14 2012 115 10 38 chr11 64989847 64990161 -83793311 + AluSx SINE Alu 4 308 -4 2492 57 7 7 chr11 64990165 64990461 -83793011 + AluY SINE Alu 1 296 -15 737 235 215 12 chr11 64990515 64990649 -83792823 + AluJo SINE Alu 1 106 -196 1708 88 5 0 chr11 64990649 64990864 -83792608 + AluSp SINE Alu 1 216 -97 2253 83 40 10 chr11 64990864 64991164 -83792308 + AluY SINE Alu 1 309 -2 737 235 215 12 chr11 64991164 64991279 -83792193 + AluJo SINE Alu 105 302 0 1767 133 8 93 chr11 64991488 64991622 -83791850 + MER47A DNA MER2_type 4 148 -2175 2234 73 28 7 chr11 64991622 64991908 -83791564 - AluSc SINE Alu -17 292 1 1767 133 8 93 chr11 64991908 64992170 -83791302 + MER47A DNA MER2_type 148 366 0 2167 123 0 3 chr11 64992495 64992795 -83790677 - AluSx SINE Alu -13 299 1 2018 152 0 0 chr11 64992801 64993107 -83790365 - AluSq SINE Alu 0 306 1 907 182 91 0 chr11 64993204 64993358 -83790114 - AluJb SINE Alu -9 303 136 2337 85 7 0 chr11 64993475 64993769 -83789703 - AluSx SINE Alu -16 296 1 196 302 62 52 chr11 64993779 64993875 -83789597 - MIR SINE MIR -67 141 45 2024 138 10 7 chr11 64993906 64994203 -83789269 + AluSx SINE Alu 1 298 -14 390 292 119 43 chr11 64994212 64994397 -83789075 - MIR SINE MIR -2 260 62 937 107 15 0 chr11 64994538 64994669 -83788803 + AluSq/x SINE Alu 1 133 -180 2503 76 3 0 chr11 64994795 64995098 -83788374 - AluY SINE Alu -7 304 1 2137 131 3 0 chr11 64995130 64995421 -83788051 + AluSx SINE Alu 1 292 -20 2160 128 10 0 chr11 64995472 64995770 -83787702 + AluSq SINE Alu 1 301 -12 2217 104 0 22 chr11 65196699 65197015 -83586457 + AluSx SINE Alu 1 309 -3 2402 65 13 0 chr11 65198605 65198914 -83584558 + AluSp SINE Alu 1 313 0 193 342 0 25 chr11 65198914 65198993 -83584479 - MER5A DNA MER1_type -50 139 63 216 218 51 39 chr11 65199095 65199173 -83584299 + MIR SINE MIR 46 124 -84 21 0 0 0 chr11 65199277 65199298 -83584174 + GC_rich Low_complexity Low_complexity 1 21 0 196 241 93 0 chr11 65201159 65201213 -83582259 - MIR SINE MIR -122 140 82 2367 79 0 3 chr11 65201252 65201556 -83581916 - AluSx SINE Alu -9 303 1 2401 64 0 0 chr11 65201567 65201862 -83581610 - AluY SINE Alu -16 295 1 664 212 15 0 chr11 65201934 65202071 -83581401 + AluSg/x SINE Alu 173 311 -1 2348 89 0 6 chr11 65202074 65202387 -83581085 + AluY SINE Alu 1 311 0 325 335 34 34 chr11 65204130 65204309 -83579163 + MIR3 SINE MIR 29 207 -1 255 217 68 33 chr11 65205069 65205160 -83578312 - MIR SINE MIR -62 146 81 30 27 0 0 chr11 65206364 65206401 -83577071 + AT_rich Low_complexity Low_complexity 1 37 0 401 242 44 0 chr11 65207293 65207384 -83576088 + MIR SINE MIR 59 153 -109 2240 90 3 0 chr11 65207658 65207957 -83575515 - AluSg SINE Alu -4 306 7 2023 109 0 7 chr11 65207964 65208291 -83575181 - AluSx SINE Alu 0 325 1 2202 120 0 0 chr11 65208293 65208601 -83574871 - AluSg SINE Alu -2 308 1 1839 127 14 20 chr11 65208608 65208900 -83574572 - AluJb SINE Alu -21 291 2 263 256 24 80 chr11 65210316 65210441 -83573031 - MIR SINE MIR -86 176 59 2393 66 0 7 chr11 65211166 65211468 -83572004 + AluY SINE Alu 1 300 -11 2080 93 0 14 chr11 65211518 65211807 -83571665 + AluSq SINE Alu 1 285 -28 270 0 0 0 chr11 65211807 65211837 -83571635 + (GA)n Simple_repeat Simple_repeat 2 31 0 189 258 45 30 chr11 65212608 65212674 -83570798 - L2 LINE L2 -192 3080 3014 211 246 71 50 chr11 65213764 65213890 -83569582 + MIR SINE MIR 20 147 -61 2207 105 7 0 chr11 65214142 65214446 -83569026 - AluSx SINE Alu -6 306 1 327 283 47 0 chr11 65214943 65215051 -83568421 - MIR SINE MIR -51 211 100 225 279 56 0 chr11 65217321 65217401 -83566071 + MIR SINE MIR 41 129 -79 1943 112 31 0 chr11 65217504 65217790 -83565682 + AluSq SINE Alu 1 295 -18 187 53 26 26 chr11 65218792 65218830 -83564642 + (CAAAAA)n Simple_repeat Simple_repeat 1 38 0 196 226 24 119 chr11 65222520 65222604 -83560868 + L2 LINE L2 3238 3313 0 207 169 169 42 chr11 65222686 65222757 -83560715 - MIR SINE MIR -147 115 36 187 299 91 13 chr11 65222976 65223053 -83560419 - MIR SINE MIR -145 117 35 285 337 31 0 chr11 65223763 65223861 -83559611 + MIR SINE MIR 21 121 -141 181 225 126 72 chr11 65224539 65224650 -83558822 - MIR SINE MIR -124 138 22 333 165 215 8 chr11 65224692 65224805 -83558667 + MIR SINE MIR 33 171 -85 196 241 93 0 chr11 65227303 65227357 -83556115 - MIR SINE MIR -122 140 82 2367 79 0 3 chr11 65227396 65227700 -83555772 - AluSx SINE Alu -9 303 1 2301 85 0 0 chr11 65227711 65228006 -83555466 - AluY SINE Alu -16 295 1 24 0 0 0 chr11 65228006 65228030 -83555442 + AT_rich Low_complexity Low_complexity 1 24 0 2138 87 3 17 chr11 65228207 65228505 -83554967 - AluSg SINE Alu -15 295 2 2227 110 13 0 chr11 65228516 65228825 -83554647 - AluSq SINE Alu 0 313 1 1918 60 116 8 chr11 65228825 65229092 -83554380 - AluSg1 SINE Alu -13 296 1 1576 169 20 34 chr11 65229092 65229388 -83554084 - AluJo SINE Alu -19 293 2 184 222 0 0 chr11 65229500 65229536 -83553936 - L2 LINE L2 -17 3255 3220 267 294 118 0 chr11 65229585 65229687 -83553785 - MIR SINE MIR -1 261 148 2358 77 0 3 chr11 65229687 65229999 -83553473 - AluY SINE Alu 0 311 1 2011 111 4 0 chr11 65230000 65230280 -83553192 - AluSg SINE Alu -21 289 9 984 137 0 0 chr11 65232455 65232601 -83550871 + AluSg/x SINE Alu 136 281 -31 237 119 0 0 chr11 65232615 65232657 -83550815 + (TA)n Simple_repeat Simple_repeat 1 42 0 870 204 49 18 chr11 65232677 65232902 -83550570 - MIR SINE MIR 0 262 31 405 258 289 14 chr11 65233333 65233686 -83549786 + L2 LINE L2 712 1161 -2153 2261 87 10 3 chr11 65233726 65234026 -83549446 + AluSg SINE Alu 1 302 -8 189 299 28 73 chr11 65234057 65234143 -83549329 + L2 LINE L2 2379 2467 -847 874 153 0 0 chr11 65234143 65234274 -83549198 + AluJo/FLAM SINE Alu 1 131 -171 2213 87 0 16 chr11 65234277 65234587 -83548885 + AluY SINE Alu 1 305 -6 189 299 28 73 chr11 65234587 65234673 -83548799 + L2 LINE L2 2469 2547 -767 277 231 0 26 chr11 65234675 65234753 -83548719 + MER34C LTR ERV1 37 112 -473 22 0 0 0 chr11 65235555 65235577 -83547895 + GC_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr11 65235625 65235653 -83547819 + GC_rich Low_complexity Low_complexity 1 28 0 273 292 99 3 chr11 65237171 65237293 -83546179 - MIR3 SINE MIR -50 158 44 613 313 76 0 chr11 65237323 65237521 -83545951 + MIR SINE MIR 28 240 -22 263 294 98 0 chr11 65240277 65240369 -83543103 - MIR SINE MIR -73 135 35 2464 68 3 0 chr11 65241069 65241378 -83542094 - AluSp SINE Alu -3 310 1 1642 189 3 19 chr11 65241407 65241724 -83541748 + AluJb SINE Alu 1 312 0 244 303 150 38 chr11 65241725 65241946 -83541526 - L2 LINE L2 -416 2898 2630 2327 93 0 0 chr11 65241946 65242248 -83541224 + AluSx SINE Alu 1 302 -10 244 303 150 38 chr11 65242248 65242340 -83541132 - L2 LINE L2 -684 2630 2550 180 125 0 0 chr11 65244243 65244275 -83539197 + (GGA)n Simple_repeat Simple_repeat 2 33 0 1152 133 0 0 chr11 65244700 65244873 -83538599 + AluSg/x SINE Alu 136 308 -4 659 211 96 5 chr11 65244878 65245077 -83538395 + L1MC4 LINE L1 7687 7903 -139 1560 87 0 5 chr11 65245098 65245304 -83538168 + AluSq SINE Alu 1 205 -108 2245 80 21 0 chr11 65250883 65251171 -83532301 - AluSx SINE Alu -18 294 1 28 61 0 0 chr11 65251706 65251755 -83531717 + AT_rich Low_complexity Low_complexity 1 49 0 207 193 123 18 chr11 65252009 65252066 -83531406 + MIR SINE MIR 81 143 -65 270 190 103 0 chr11 65252545 65252603 -83530869 - MIR SINE MIR -88 174 111 200 288 30 0 chr11 65253410 65253476 -83529996 + L2 LINE L2 3241 3308 -5 21 36 0 0 chr11 65253573 65253601 -83529871 + GC_rich Low_complexity Low_complexity 1 28 0 871 134 0 0 chr11 65254726 65254860 -83528612 + FRAM SINE Alu 1 134 -42 252 0 0 0 chr11 65254978 65255006 -83528466 + (CA)n Simple_repeat Simple_repeat 2 29 0 270 0 0 0 chr11 65255049 65255079 -83528393 + (CA)n Simple_repeat Simple_repeat 2 31 0 378 0 0 0 chr11 65255126 65255168 -83528304 + (CA)n Simple_repeat Simple_repeat 2 43 0 207 0 0 0 chr11 65255218 65255241 -83528231 + (CA)n Simple_repeat Simple_repeat 1 23 0 405 0 0 0 chr11 65255287 65255332 -83528140 + (CA)n Simple_repeat Simple_repeat 1 45 0 351 0 0 0 chr11 65255378 65255417 -83528055 + (CA)n Simple_repeat Simple_repeat 1 39 0 225 0 0 0 chr11 65255463 65255488 -83527984 + (CA)n Simple_repeat Simple_repeat 1 25 0 197 350 0 0 chr11 65256090 65256150 -83527322 - L2 LINE L2 -2 3311 3252 1643 116 16 4 chr11 65256179 65256421 -83527051 + AluSc SINE Alu 60 304 -5 265 228 152 0 chr11 65256711 65256803 -83526669 - MIR SINE MIR -65 197 92 255 235 49 29 chr11 65256920 65257022 -83526450 + MIR SINE MIR 109 212 -50 835 154 0 21 chr11 65257025 65257168 -83526304 + FLAM_C SINE Alu 1 140 -3 2114 127 0 13 chr11 65257168 65257484 -83525988 + AluSx SINE Alu 1 312 0 1897 94 91 11 chr11 65257680 65257966 -83525506 + AluSg SINE Alu 1 309 -1 2185 86 17 0 chr11 65258194 65258486 -83524986 + AluY SINE Alu 1 297 -14 1977 119 0 39 chr11 65258493 65258624 -83524848 + AluSx SINE Alu 6 141 -171 2343 85 0 0 chr11 65258624 65258919 -83524553 + AluSg SINE Alu 1 295 -15 1977 119 0 39 chr11 65258919 65259098 -83524374 + AluSx SINE Alu 141 304 -8 319 169 0 4 chr11 65259277 65259346 -83524126 + Alu SINE Alu 2 52 -249 242 331 99 13 chr11 65259437 65259588 -83523884 + MIR SINE MIR 29 192 -70 300 207 76 2 chr11 65259653 65259726 -83523746 - MIR SINE MIR -54 154 77 881 250 20 0 chr11 65259939 65260139 -83523333 - MIR SINE MIR -50 212 9 339 113 0 0 chr11 65260325 65260359 -83523113 + (TG)n Simple_repeat Simple_repeat 1 87 0 339 113 0 0 chr11 65260359 65260412 -83523060 + (TG)n Simple_repeat Simple_repeat 2 54 0 2096 126 0 0 chr11 65260429 65260723 -83522749 - AluSx SINE Alu -18 294 1 211 327 27 27 chr11 65261101 65261211 -83522261 - MIR SINE MIR -77 185 76 1591 141 17 48 chr11 65261528 65261819 -83521653 - AluJo SINE Alu -14 298 17 639 242 114 22 chr11 65261875 65262102 -83521370 - MER58B DNA MER1_type -11 330 83 1406 145 0 26 chr11 65262102 65262329 -83521143 + AluJo SINE Alu 1 221 -91 744 156 0 0 chr11 65262361 65262470 -83521002 + AluSg/x SINE Alu 183 291 -19 258 95 0 0 chr11 65262471 65262513 -83520959 + (TA)n Simple_repeat Simple_repeat 1 42 0 882 200 49 18 chr11 65262533 65262758 -83520714 - MIR SINE MIR 0 262 31 405 258 289 14 chr11 65263188 65263541 -83519931 + L2 LINE L2 712 1161 -2153 2257 87 10 3 chr11 65263581 65263880 -83519592 + AluSg SINE Alu 1 301 -9 248 247 0 59 chr11 65263911 65263996 -83519476 + L2 LINE L2 2379 2458 -856 874 153 0 0 chr11 65263997 65264128 -83519344 + AluJo/FLAM SINE Alu 1 131 -171 1791 68 0 13 chr11 65264131 65264365 -83519107 + AluY SINE Alu 1 231 -80 2176 86 17 0 chr11 65264692 65264983 -83518489 + AluY SINE Alu 1 296 -15 812 113 0 38 chr11 65264991 65265124 -83518348 + AluSq/x SINE Alu 6 133 -180 1985 114 7 13 chr11 65265126 65265425 -83518047 + AluSg1 SINE Alu 1 297 -12 511 221 25 25 chr11 65265426 65265548 -83517924 - MIR SINE MIR -100 162 41 227 225 14 28 chr11 65265684 65265755 -83517717 + C-rich Low_complexity Low_complexity 3 72 0 2397 65 0 0 chr11 65267146 65267439 -83516033 - AluY SINE Alu -18 293 1 739 173 0 38 chr11 65267682 65267815 -83515657 - FLAM_C SINE Alu -5 128 1 2080 106 10 7 chr11 65267878 65268171 -83515301 - AluSx SINE Alu -18 294 1 466 251 51 64 chr11 65268259 65268494 -83514978 - MER102a DNA MER1_type -3 327 96 1791 153 38 0 chr11 65268508 65268796 -83514676 + AluJb SINE Alu 1 299 -13 2025 108 0 10 chr11 65268939 65269227 -83514245 - AluSx SINE Alu -27 285 1 2363 102 6 0 chr11 65269246 65269569 -83513903 - L1PA13 LINE L1 -11 6152 5828 2271 93 0 6 chr11 65269569 65269880 -83513592 - AluY SINE Alu -2 309 1 2192 123 0 0 chr11 65269887 65270197 -83513275 - AluSx SINE Alu -2 310 1 2250 79 3 0 chr11 65270205 65270495 -83512977 - AluY SINE Alu -20 291 1 628 206 13 32 chr11 65270509 65270664 -83512808 + L2 LINE L2 2445 2596 -718 560 304 187 24 chr11 65270668 65270960 -83512512 + L2 LINE L2 2727 2970 -343 2315 66 3 0 chr11 65270960 65271248 -83512224 - AluSc SINE Alu -20 289 1 560 304 187 24 chr11 65271248 65271458 -83512014 + L2 LINE L2 2970 3313 0 1376 151 9 0 chr11 65271549 65271767 -83511705 + AluJo SINE Alu 1 220 -92 2199 110 0 3 chr11 65271827 65272136 -83511336 + AluY SINE Alu 2 309 -2 799 188 94 0 chr11 65272152 65272301 -83511171 + FRAM SINE Alu 2 164 -2 733 130 113 0 chr11 65272460 65272575 -83510897 - FLAM_A SINE Alu -5 128 1 854 141 0 0 chr11 65273042 65273163 -83510309 - FLAM_C SINE Alu -11 122 2 288 314 60 9 chr11 65273165 65273349 -83510123 - MIR SINE MIR -9 253 60 27 0 0 0 chr11 65274015 65274042 -83509430 + GC_rich Low_complexity Low_complexity 1 27 0 281 325 32 48 chr11 65274190 65274316 -83509156 + MIR SINE MIR 96 219 -43 36 23 0 0 chr11 65274617 65274660 -83508812 + GC_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr11 65274681 65274706 -83508766 + GC_rich Low_complexity Low_complexity 1 25 0 311 290 164 4 chr11 65276616 65276771 -83506701 - MIR SINE MIR -62 146 10 259 169 0 135 chr11 65276765 65276854 -83506618 + MIR3 SINE MIR 89 165 -43 * 289 316 23 58 chr11 65278904 65279078 -83504394 + L2 LINE L2 2931 3098 -174 1992 147 0 10 chr11 65279105 65279412 -83504060 - AluJb SINE Alu -7 305 2 383 332 56 42 chr11 65279894 65280108 -83503364 - MIR SINE MIR 0 262 46 216 0 0 0 chr11 65282706 65282730 -83500742 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 2135 117 0 0 chr11 65282844 65283135 -83500337 - AluSx SINE Alu -21 291 1 2014 108 36 33 chr11 65283470 65283777 -83499695 + AluSx SINE Alu 1 308 -4 213 39 0 0 chr11 65284130 65284156 -83499316 + (GGGA)n Simple_repeat Simple_repeat 3 28 0 209 301 59 108 chr11 65284305 65284677 -83498795 - L2 LINE L2 -23 3249 2896 843 50 0 0 chr11 65285273 65285373 -83498099 + HY3 scRNA scRNA 1 100 -1 528 262 128 18 chr11 65285682 65285846 -83497626 - MIR SINE MIR -66 196 15 1306 164 0 13 chr11 65287721 65287952 -83495520 + AluJb SINE Alu 85 312 0 527 176 52 7 chr11 65287957 65287998 -83495474 + MER53 DNA DNA 36 74 -115 2214 107 3 0 chr11 65287998 65288307 -83495165 + AluSg SINE Alu 1 310 0 527 176 52 7 chr11 65288307 65288401 -83495071 + MER53 DNA DNA 74 177 -12 25 0 0 0 chr11 65288647 65288672 -83494800 + GC_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr11 65288913 65288934 -83494538 + GC_rich Low_complexity Low_complexity 1 21 0 236 30 30 0 chr11 65290511 65290544 -83492928 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 552 79 169 45 chr11 65290544 65290633 -83492839 - FRAM SINE Alu -29 147 48 1969 59 114 7 chr11 65290637 65290910 -83492562 - AluSg1 SINE Alu -7 302 1 1576 169 20 34 chr11 65290910 65291206 -83492266 - AluJo SINE Alu -19 293 2 184 222 0 0 chr11 65291318 65291354 -83492118 - L2 LINE L2 -17 3255 3220 379 273 46 124 chr11 65291403 65291505 -83491967 - MIR SINE MIR -1 261 153 2358 77 0 3 chr11 65291505 65291817 -83491655 - AluY SINE Alu 0 311 1 2037 114 0 0 chr11 65291818 65292099 -83491373 - AluSg SINE Alu -21 289 9 379 273 46 124 chr11 65292099 65292120 -83491352 - MIR SINE MIR -109 153 132 2266 89 0 10 chr11 65292120 65292433 -83491039 - AluSg SINE Alu 0 310 1 379 273 46 124 chr11 65292433 65292588 -83490884 - MIR SINE MIR -130 132 2 21 36 0 0 chr11 65294659 65294687 -83488785 + GC_rich Low_complexity Low_complexity 1 28 0 2101 136 0 0 chr11 65295350 65295645 -83487827 - AluSx SINE Alu -17 295 1 1088 89 0 0 chr11 65295645 65295780 -83487692 - AluSq/x SINE Alu -178 135 1 366 346 75 0 chr11 65295813 65296041 -83487431 + L1MC4 LINE L1 5678 5922 -1886 1976 119 17 3 chr11 65296166 65296460 -83487012 - AluSx SINE Alu -14 298 1 1893 155 3 7 chr11 65296464 65296760 -83486712 - AluJb SINE Alu -17 295 1 38 22 0 0 chr11 65297253 65297298 -83486174 + AT_rich Low_complexity Low_complexity 1 45 0 1479 129 54 58 chr11 65297318 65297612 -83485860 + AluSq SINE Alu 12 304 -9 329 221 44 0 chr11 65297644 65297712 -83485760 - L1MCa LINE L1 -4350 2076 2006 * 398 276 23 0 chr11 65297699 65297786 -83485686 - L1MC4 LINE L1 -1339 6703 6615 392 322 0 0 chr11 65297707 65297797 -83485675 + L1MC4 LINE L1 6614 6703 -1339 * 420 71 0 0 chr11 65297799 65297855 -83485617 + (CA)n Simple_repeat Simple_repeat 2 57 0 207 0 0 0 chr11 65297855 65297878 -83485594 + (TA)n Simple_repeat Simple_repeat 2 24 0 2202 84 3 14 chr11 65297982 65298279 -83485193 - AluSg SINE Alu -15 295 2 2227 110 13 0 chr11 65298290 65298599 -83484873 - AluSq SINE Alu 0 313 1 2371 73 0 13 chr11 65298599 65298765 -83484707 - AluSx SINE Alu -13 299 137 2209 108 3 3 chr11 65298765 65299072 -83484400 - AluSx SINE Alu -5 307 1 2371 73 0 13 chr11 65299072 65299208 -83484264 - AluSx SINE Alu -175 137 1 1053 62 0 0 chr11 65299211 65299340 -83484132 - AluSg SINE Alu -179 131 3 278 42 104 0 chr11 65299342 65299390 -83484082 + MER41B LTR ERV1 512 564 -71 2143 75 14 4 chr11 65299618 65299899 -83483573 - AluSp SINE Alu -24 289 6 2365 115 6 0 chr11 65299926 65300248 -83483224 - L1PA13 LINE L1 -12 6151 5825 2271 90 3 3 chr11 65300248 65300559 -83482913 - AluSp SINE Alu -2 311 1 2365 115 6 0 chr11 65300559 65300574 -83482898 - L1PA13 LINE L1 -338 5825 5812 1906 153 0 10 chr11 65300598 65300910 -83482562 + AluSx SINE Alu 1 309 0 694 223 66 6 chr11 65301141 65301307 -83482165 + MIR SINE MIR 63 238 -24 1640 215 91 56 chr11 65301335 65301361 -83482111 - HsTC2 DNA Tc2 0 1898 1874 1847 164 17 0 chr11 65301361 65301659 -83481813 + AluJb SINE Alu 1 303 -9 1640 215 91 56 chr11 65301659 65302094 -83481378 - HsTC2 DNA Tc2 -24 1874 1409 2230 99 0 16 chr11 65302094 65302407 -83481065 + AluSx SINE Alu 1 308 -4 1640 215 91 56 chr11 65302407 65302548 -83480924 - HsTC2 DNA Tc2 -489 1409 1274 1664 188 3 13 chr11 65302638 65302946 -83480526 + AluJo SINE Alu 1 305 -7 300 282 92 25 chr11 65303012 65303175 -83480297 + L2 LINE L2 2910 3083 -189 198 167 42 21 chr11 65303470 65303518 -83479954 - MIR SINE MIR -56 152 104 244 208 0 0 chr11 65304150 65304198 -83479274 + GA-rich Low_complexity Low_complexity 2 49 0 2093 110 14 0 chr11 65309165 65309455 -83474017 + AluSx SINE Alu 1 294 -18 1484 120 0 14 chr11 65309715 65309876 -83473596 - AluSg/x SINE Alu -18 294 135 2410 69 0 0 chr11 65309876 65310180 -83473292 - AluY SINE Alu -7 304 1 1484 120 0 14 chr11 65310180 65310235 -83473237 - AluSg/x SINE Alu -177 135 81 2073 73 25 7 chr11 65310235 65310535 -83472937 - AluSc SINE Alu 0 305 1 333 250 22 22 chr11 65310546 65310638 -83472834 - L2 LINE L2 0 3313 3222 204 342 9 45 chr11 65310665 65310776 -83472696 - L2 LINE L2 -512 2802 2696 231 371 0 0 chr11 65310871 65310941 -83472531 - MIR3 SINE MIR -54 154 85 633 266 6 18 chr11 65311110 65311210 -83472262 + MIR SINE MIR 67 166 -96 2328 92 3 0 chr11 65311210 65311516 -83471956 + AluSx SINE Alu 1 307 -5 633 266 6 18 chr11 65311516 65311584 -83471888 + MIR SINE MIR 166 233 -29 392 322 0 0 chr11 65311744 65311834 -83471638 - L1MC4 LINE L1 -1339 6703 6614 * 414 246 5 14 chr11 65311790 65311905 -83471567 + L1MC4 LINE L1 1995 6977 -1345 1487 129 54 58 chr11 65311937 65312232 -83471240 - AluSq SINE Alu -8 305 12 39 22 0 0 chr11 65312252 65312298 -83471174 + AT_rich Low_complexity Low_complexity 1 46 0 1893 155 3 7 chr11 65312790 65313086 -83470386 + AluJb SINE Alu 1 295 -17 2389 88 0 0 chr11 65313090 65313397 -83470075 + AluSp SINE Alu 1 307 -6 1894 129 14 7 chr11 65313420 65313714 -83469758 + AluSx SINE Alu 3 298 -14 366 346 75 0 chr11 65313839 65314067 -83469405 - L1MC4 LINE L1 -1886 5922 5678 1088 89 0 0 chr11 65314100 65314235 -83469237 + AluSq/x SINE Alu 1 135 -178 2119 132 0 0 chr11 65314235 65314530 -83468942 + AluSx SINE Alu 1 295 -17 2244 93 6 10 chr11 65314725 65315038 -83468434 - AluSq SINE Alu -1 312 1 255 263 237 0 chr11 65315821 65316011 -83467461 + L2 LINE L2 2732 2966 -348 426 204 0 0 chr11 65316046 65316154 -83467318 + (CA)n Simple_repeat Simple_repeat 2 109 0 1949 155 0 3 chr11 65316214 65316518 -83466954 + AluJo SINE Alu 1 303 -9 660 275 22 54 chr11 65316695 65316795 -83466677 - MIR SINE MIR -7 255 153 2111 61 48 31 chr11 65316795 65317089 -83466383 + AluY SINE Alu 1 299 -12 660 275 22 54 chr11 65317089 65317210 -83466262 - MIR SINE MIR -109 153 41 227 225 14 28 chr11 65317346 65317417 -83466055 + C-rich Low_complexity Low_complexity 3 72 0 1989 141 7 0 chr11 65317591 65317895 -83465577 - AluSx SINE Alu -6 306 1 1500 155 148 4 chr11 65317918 65318182 -83465290 - AluJo SINE Alu 0 302 1 761 273 52 50 chr11 65318260 65318600 -83464872 - L1MC4a LINE L1 -298 5823 5533 987 129 14 0 chr11 65319291 65319438 -83464034 - AluSq/x SINE Alu -164 149 1 1500 155 148 4 chr11 65319461 65319725 -83463747 - AluJo SINE Alu 0 302 1 761 273 52 50 chr11 65319803 65320143 -83463329 - L1MC4a LINE L1 -298 5823 5533 299 315 0 0 chr11 65321026 65321134 -83462338 + (TG)n Simple_repeat Simple_repeat 1 108 0 359 265 9 11 chr11 65321177 65321652 -83461820 + (TG)n Simple_repeat Simple_repeat 1 473 0 435 237 0 0 chr11 65321665 65321842 -83461630 + (TG)n Simple_repeat Simple_repeat 1 177 0 2240 107 0 0 chr11 65322540 65322831 -83460641 - AluSx SINE Alu -13 299 9 213 60 20 40 chr11 65323293 65323343 -83460129 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 2002 96 4 4 chr11 65323351 65323621 -83459851 - AluSc SINE Alu -38 271 2 702 323 93 52 chr11 65324193 65324690 -83458782 + L2 LINE L2 2586 3126 -146 1783 132 92 0 chr11 65324690 65324963 -83458509 - AluSg SINE Alu -12 298 1 702 323 93 52 chr11 65324963 65325117 -83458355 + L2 LINE L2 3126 3272 0 318 254 0 0 chr11 65325305 65325376 -83458096 + MIR SINE MIR 63 133 -75 621 346 20 0 chr11 65325598 65325800 -83457672 + MIR SINE MIR 21 226 -36 322 285 57 0 chr11 65326300 65326397 -83457075 + MER5A DNA MER1_type 67 159 -19 886 149 7 7 chr11 65326406 65326547 -83456925 + FRAM SINE Alu 21 161 -15 256 305 49 0 chr11 65326610 65326692 -83456780 - MIR SINE MIR -121 141 56 202 158 26 0 chr11 65327357 65327395 -83456077 - MIR SINE MIR -12 250 212 366 353 52 48 chr11 65327443 65327695 -83455777 - MIR SINE MIR 0 262 10 1188 190 40 0 chr11 65328040 65328287 -83455185 - Tigger3(Golem) DNA MER2_type -1 3028 2772 351 171 0 53 chr11 65328291 65328367 -83455105 - Tigger3(Golem) DNA MER2_type -2893 136 65 425 157 0 12 chr11 65328387 65328470 -83455002 + CT-rich Low_complexity Low_complexity 3 84 0 414 213 0 0 chr11 65328486 65328566 -83454906 - FLAM SINE Alu -25 118 39 667 175 0 0 chr11 65328572 65328675 -83454797 - AluSq/x SINE Alu -209 103 1 328 240 0 0 chr11 65328675 65328750 -83454722 - Tigger3(Golem) DNA MER2_type -2951 78 4 2189 124 3 0 chr11 65329080 65329386 -83454086 + AluSx SINE Alu 1 307 -5 1189 218 11 84 chr11 65329510 65329891 -83453581 + MLT1J LTR MaLR 157 509 -2 259 311 43 33 chr11 65331358 65331605 -83451867 + MLT1L LTR MaLR 251 520 -95 2668 108 8 0 chr11 65331792 65332164 -83451308 - THE1C LTR MaLR 0 375 1 2042 123 19 7 chr11 65332595 65332903 -83450569 + AluSx SINE Alu 1 312 0 270 232 0 0 chr11 65333366 65333422 -83450050 - MER103 DNA DNA -47 119 64 2275 85 0 13 chr11 65333708 65334014 -83449458 - AluSx SINE Alu -10 302 1 248 311 133 31 chr11 65334326 65334551 -83448921 - L2 LINE L2 0 3272 3025 2315 92 0 0 chr11 65334759 65335064 -83448408 - AluSx SINE Alu -7 305 1 846 186 48 0 chr11 65335064 65335231 -83448241 - AluSg/x SINE Alu -15 295 121 1955 131 13 7 chr11 65335246 65335552 -83447920 - AluSq SINE Alu -5 308 1 512 217 31 43 chr11 65335553 65335714 -83447758 - L1 LINE L1 -814 5332 5174 1406 157 16 69 chr11 65335717 65336035 -83447437 - AluJo SINE Alu -11 301 1 318 232 29 0 chr11 65336190 65336259 -83447213 + MLT1J LTR MaLR 111 181 -330 1822 112 0 19 chr11 65336849 65337108 -83446364 - AluSx SINE Alu -58 254 1 390 223 147 64 chr11 65338070 65338227 -83445245 - MER5B DNA MER1_type -4 174 5 1642 168 37 7 chr11 65338253 65338550 -83444922 - AluJb SINE Alu -6 306 1 2181 89 0 0 chr11 65338585 65338914 -83444558 + AluSg SINE Alu 1 329 0 240 245 0 0 chr11 65339119 65339217 -83444255 + L1M4 LINE L1 4358 4455 -1691 236 326 41 0 chr11 65339271 65339369 -83444103 - MIR SINE MIR -12 250 149 1124 209 8 13 chr11 65339380 65339614 -83443858 - MER46C DNA MER2_type -13 325 93 2294 76 16 3 chr11 65339751 65340054 -83443418 + AluSg SINE Alu 1 307 -3 2256 80 7 3 chr11 65340242 65340543 -83442929 + AluSp SINE Alu 2 303 -10 785 251 29 10 chr11 65340815 65341022 -83442450 - L2 LINE L2 0 3313 3103 2142 94 3 3 chr11 65341042 65341340 -83442132 - AluSx SINE Alu -14 298 1 317 182 0 0 chr11 65341695 65341750 -83441722 - L1MB7 LINE L1 -19 6165 6111 183 246 18 0 chr11 65342000 65342057 -83441415 + L2 LINE L2 2916 2973 -299 324 284 0 0 chr11 65342075 65342156 -83441316 + L2 LINE L2 3172 3252 -20 1829 151 3 13 chr11 65342325 65342630 -83440842 + AluJb SINE Alu 1 302 -10 434 95 0 0 chr11 65342644 65342707 -83440765 + L1MB7 LINE L1 6068 6130 -54 697 207 0 0 chr11 65342714 65342830 -83440642 - FLAM_C SINE Alu -26 117 2 244 140 0 0 chr11 65342832 65342882 -83440590 + L1MB7 LINE L1 6116 6165 -19 1397 231 14 41 chr11 65343309 65343672 -83439800 + MLT1J LTR MaLR 1 353 -158 2147 99 30 0 chr11 65343736 65344040 -83439432 - AluSp SINE Alu 0 313 1 2305 87 3 3 chr11 65344503 65344815 -83438657 + AluSx SINE Alu 1 312 0 496 169 114 133 chr11 65345399 65345507 -83437965 + MER63 DNA MER1_type 1 109 -953 1961 120 14 0 chr11 65345507 65345798 -83437674 - AluSq SINE Alu -18 295 1 496 169 114 133 chr11 65345798 65345855 -83437617 + MER63 DNA MER1_type 109 789 -273 325 298 32 11 chr11 65346788 65346882 -83436590 + L1ME4a LINE L1 5864 5959 -162 229 271 0 0 chr11 65346884 65346932 -83436540 + (TG)n Simple_repeat Simple_repeat 1 48 0 2347 96 0 0 chr11 65346986 65347298 -83436174 + AluSx SINE Alu 1 312 0 991 211 14 24 chr11 65347315 65347523 -83435949 + MER20 DNA MER1_type 13 218 -1 559 266 28 7 chr11 65347551 65347694 -83435778 + MER5A DNA MER1_type 43 188 -1 226 278 65 19 chr11 65347714 65347822 -83435650 + L1ME4a LINE L1 6007 6119 -2 326 302 56 40 chr11 65347908 65348034 -83435438 + MIR SINE MIR 57 184 -78 319 358 17 39 chr11 65348804 65348983 -83434489 + MIR SINE MIR 82 256 -6 2104 123 3 0 chr11 65348986 65349295 -83434177 + AluSx SINE Alu 1 310 -2 225 193 165 28 chr11 65350013 65350122 -83433350 + L1MC4 LINE L1 7126 7249 -793 623 237 49 94 chr11 65350137 65350722 -83432750 - MLT1G LTR MaLR -22 568 3 702 283 62 82 chr11 65350837 65351114 -83432358 + L1MC5 LINE L1 7261 7542 -419 1694 156 3 19 chr11 65351114 65351421 -83432051 + AluJo SINE Alu 1 302 -10 702 283 62 82 chr11 65351421 65351826 -83431646 + L1MC5 LINE L1 7542 7929 -32 331 237 23 130 chr11 65353520 65353651 -83429821 + L1ME4a LINE L1 5979 6095 -26 805 254 51 0 chr11 65353670 65353867 -83429605 - MER20 DNA MER1_type -12 207 1 1156 89 42 0 chr11 65354239 65354407 -83429065 - MER30 DNA MER1_type -55 175 1 2314 231 35 19 chr11 65354407 65354778 -83428694 + L1M4 LINE L1 3404 3790 -2356 1972 135 7 7 chr11 65354778 65355082 -83428390 + AluJo SINE Alu 1 304 -8 2314 231 35 19 chr11 65355082 65355330 -83428142 + L1M4 LINE L1 3790 4033 -2113 2416 66 3 0 chr11 65355337 65355638 -83427834 - AluSp SINE Alu -11 302 1 1201 178 0 0 chr11 65355640 65355842 -83427630 - AluJb SINE Alu -17 295 94 1321 173 24 144 chr11 65355844 65356111 -83427361 + L1M4 LINE L1 4023 4320 -1826 1991 125 10 0 chr11 65356111 65356406 -83427066 + AluSq SINE Alu 1 298 -15 1321 173 24 144 chr11 65356406 65356484 -83426988 + L1M4 LINE L1 4320 4406 -1740 698 134 39 31 chr11 65356484 65356611 -83426861 + FLAM_A SINE Alu 1 128 -5 1321 173 24 144 chr11 65356611 65356674 -83426798 + L1M4 LINE L1 4406 4367 -1779 1836 132 22 44 chr11 65356674 65356993 -83426479 + AluSx SINE Alu 1 312 0 1321 173 24 144 chr11 65356993 65357074 -83426398 + L1M4 LINE L1 4366 4455 -1691 236 326 41 0 chr11 65357128 65357226 -83426246 - MIR SINE MIR -12 250 149 1124 209 8 13 chr11 65357237 65357471 -83426001 - MER46C DNA MER2_type -13 325 93 2294 76 16 3 chr11 65357608 65357911 -83425561 + AluSg SINE Alu 1 307 -3 2256 80 7 3 chr11 65358099 65358400 -83425072 + AluSp SINE Alu 2 303 -10 1058 298 49 8 chr11 65358672 65358899 -83424573 - L2 LINE L2 0 3313 3062 2158 88 7 3 chr11 65358899 65359195 -83424277 - AluSx SINE Alu -15 297 1 1058 298 49 8 chr11 65359195 65359353 -83424119 - L2 LINE L2 -251 3062 2912 697 187 0 16 chr11 65359420 65359543 -83423929 - AluJ SINE Alu -9 303 183 846 146 0 15 chr11 65359543 65359673 -83423799 - AluJ SINE Alu -174 128 1 946 309 9 3 chr11 65359711 65360031 -83423441 + MLT1F-int LTR MaLR 280 601 -770 362 310 114 16 chr11 65360215 65360399 -83423073 + MLT1F-int LTR MaLR 692 893 -478 778 172 0 0 chr11 65360635 65360757 -83422715 - FLAM_A SINE Alu -13 129 8 527 236 61 132 chr11 65360770 65361080 -83422392 + MLT1F-int LTR MaLR 1081 1368 -3 2299 220 20 20 chr11 65361083 65361579 -83421893 + MLT1F LTR MaLR 1 496 -46 807 155 0 49 chr11 65361579 65361721 -83421751 - AluJo SINE Alu -175 137 3 209 294 0 0 chr11 65361763 65361814 -83421658 - L3 LINE CR1 -95 1482 1432 807 285 73 42 chr11 65361863 65362246 -83421226 + MLT1I LTR MaLR 15 409 0 234 349 79 0 chr11 65362272 65362398 -83421074 - L3 LINE CR1 -401 1176 1041 381 217 122 0 chr11 65362788 65362903 -83420569 - MIR SINE MIR -81 181 53 2353 160 57 0 chr11 65363833 65364239 -83419233 - L1MB3 LINE L1 -4 6179 5751 1971 110 15 37 chr11 65364239 65364565 -83418907 + THE1B LTR MaLR 5 323 -41 1221 110 0 0 chr11 65364566 65364739 -83418733 + AluSg/x SINE Alu 130 302 -8 2065 98 4 4 chr11 65365555 65365831 -83417641 - AluSx SINE Alu -36 276 1 1218 169 0 10 chr11 65365866 65366073 -83417399 - AluJo SINE Alu -8 304 100 2310 84 3 10 chr11 65366089 65366400 -83417072 - AluSp SINE Alu -4 309 1 1212 195 78 28 chr11 65366402 65366566 -83416906 - AluJo SINE Alu -16 296 111 288 53 0 0 chr11 65366566 65366604 -83416868 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1212 195 78 28 chr11 65366604 65366721 -83416751 - AluJo SINE Alu -201 111 1 1153 131 45 0 chr11 65366725 65366923 -83416549 + LTR23 LTR ERV1 231 437 0 2127 120 0 13 chr11 65367113 65367429 -83416043 - AluSx SINE Alu 0 312 1 2161 93 10 3 chr11 65369672 65369972 -83413500 + AluSx SINE Alu 1 302 -10 247 269 90 0 chr11 65371476 65371554 -83411918 + L2 LINE L2 3157 3241 -31 2138 110 0 7 chr11 65371633 65371942 -83411530 - AluSg1 SINE Alu -2 307 1 691 242 114 22 chr11 65371942 65372169 -83411303 + MER58B DNA MER1_type 83 330 -11 1563 141 17 48 chr11 65372225 65372516 -83410956 + AluJo SINE Alu 17 298 -14 229 139 0 0 chr11 65372874 65372910 -83410562 + MIR SINE MIR 114 149 -113 2067 126 0 0 chr11 65373321 65373615 -83409857 + AluSx SINE Alu 1 294 -18 354 307 23 0 chr11 65373616 65373704 -83409768 - L1MC4 LINE L1 -1339 6703 6614 858 250 20 0 chr11 65373891 65374091 -83409381 + MIR SINE MIR 9 212 -50 291 192 79 14 chr11 65374304 65374377 -83409095 + MIR SINE MIR 77 154 -54 207 331 99 13 chr11 65374442 65374593 -83408879 - MIR SINE MIR -70 192 29 345 169 0 4 chr11 65374684 65374753 -83408719 - Alu SINE Alu -256 52 2 198 0 0 0 chr11 65374932 65374954 -83408518 + (T)n Simple_repeat Simple_repeat 1 22 0 1542 163 62 10 chr11 65375158 65375447 -83408025 - AluJo SINE Alu -8 304 1 1145 359 49 4 chr11 65375521 65376271 -83407201 + HERV16 LTR ERVL 2605 3470 -2091 2047 335 88 24 chr11 65376463 65376664 -83406808 + HERV16 LTR ERVL 3680 3867 -1897 2171 104 3 0 chr11 65376664 65376963 -83406509 + AluSx SINE Alu 1 300 -12 2047 335 88 24 chr11 65376963 65378023 -83405449 + HERV16 LTR ERVL 3867 5068 -696 785 261 56 46 chr11 65378375 65378785 -83404687 + LTR16A1 LTR ERVL 1 414 -43 925 173 59 23 chr11 65378786 65379006 -83404466 + L1MB5 LINE L1 5947 6174 0 246 380 22 7 chr11 65379757 65379894 -83403578 + L2 LINE L2 3172 3310 -3 2157 157 15 12 chr11 65379946 65380348 -83403124 - L1MB3 LINE L1 -7 6176 5774 424 281 93 48 chr11 65380359 65380390 -83403082 - L1ME LINE L1 -303 5818 5790 2032 147 0 3 chr11 65380390 65380719 -83402753 - AluJb SINE Alu 0 328 1 424 281 93 48 chr11 65380719 65381459 -83402013 - L1ME LINE L1 -331 5790 5008 245 221 103 15 chr11 65381500 65381568 -83401904 - LTR16C LTR ERVL -10 481 408 236 295 26 0 chr11 65381589 65381667 -83401805 - LTR16C LTR ERVL -185 306 227 1999 295 56 36 chr11 65381979 65382628 -83400844 - L1ME LINE L1 -1317 4829 4194 2215 177 24 56 chr11 65382628 65382838 -83400634 - MER66B LTR ERV1 0 486 271 261 0 0 0 chr11 65382838 65382867 -83400605 + (CAGGG)n Simple_repeat Simple_repeat 1 29 0 2215 177 24 56 chr11 65382867 65382890 -83400582 - MER66B LTR ERV1 -215 271 249 2147 102 50 0 chr11 65382890 65383173 -83400299 - AluSx SINE Alu -15 297 1 2215 177 24 56 chr11 65383173 65383440 -83400032 - MER66B LTR ERV1 -237 249 1 1999 295 56 36 chr11 65383440 65383674 -83399798 - L1ME LINE L1 -1952 4194 3966 2003 148 13 3 chr11 65383674 65383979 -83399493 - AluJb SINE Alu -4 308 1 1999 295 56 36 chr11 65383979 65384312 -83399160 - L1ME LINE L1 -2180 3966 3588 447 292 67 48 chr11 65384318 65384527 -83398945 - L1ME LINE L1 -2751 3395 3183 2415 97 7 0 chr11 65385088 65385396 -83398076 - AluSx SINE Alu -2 310 1 340 322 59 53 chr11 65385397 65385793 -83397679 - L1ME LINE L1 -3004 3142 2750 2236 128 0 3 chr11 65385793 65386106 -83397366 - AluSx SINE Alu 0 312 1 340 322 59 53 chr11 65386106 65386536 -83396936 - L1ME LINE L1 -3396 2750 2311 282 329 34 20 chr11 65386543 65386692 -83396780 + MLT1J LTR MaLR 10 160 -351 253 133 111 0 chr11 65386841 65386886 -83396586 - L1M4 LINE L1 -2074 4072 4023 1271 178 0 0 chr11 65386888 65387090 -83396382 + AluJb SINE Alu 94 295 -17 2564 66 3 0 chr11 65387092 65387393 -83396079 + AluSp SINE Alu 1 302 -11 2310 231 35 19 chr11 65387400 65387648 -83395824 - L1M4 LINE L1 -2113 4033 3790 2099 135 7 7 chr11 65387648 65387952 -83395520 - AluJo SINE Alu -8 304 1 2310 231 35 19 chr11 65387952 65388323 -83395149 - L1M4 LINE L1 -2356 3790 3404 1160 89 42 0 chr11 65388323 65388491 -83394981 + MER30 DNA MER1_type 1 175 -55 778 254 51 0 chr11 65388863 65389060 -83394412 + MER20 DNA MER1_type 1 207 -12 318 237 23 130 chr11 65389079 65389210 -83394262 - L1ME4a LINE L1 -26 6095 5979 618 278 66 86 chr11 65390905 65391310 -83392162 - L1MC5 LINE L1 -32 7929 7542 1805 156 3 19 chr11 65391310 65391617 -83391855 - AluJo SINE Alu -10 302 1 618 278 66 86 chr11 65391617 65391894 -83391578 - L1MC5 LINE L1 -419 7542 7261 587 247 37 99 chr11 65392009 65392593 -83390879 + MLT1F LTR MaLR 3 544 -23 339 193 165 28 chr11 65392609 65392718 -83390754 - L1MC4 LINE L1 -793 7249 7126 2238 123 3 0 chr11 65393436 65393745 -83389727 - AluSx SINE Alu -2 310 1 292 358 17 39 chr11 65393748 65393927 -83389545 - MIR SINE MIR -6 256 82 308 238 87 71 chr11 65394697 65394823 -83388649 - MIR SINE MIR -78 184 57 225 278 65 19 chr11 65394909 65395017 -83388455 - L1ME4a LINE L1 -2 6119 6007 549 266 28 7 chr11 65395037 65395180 -83388292 - MER5A DNA MER1_type -1 188 43 963 211 14 24 chr11 65395208 65395416 -83388056 - MER20 DNA MER1_type -1 218 13 2489 93 0 0 chr11 65395435 65395745 -83387727 - AluSx SINE Alu -2 310 1 229 271 0 0 chr11 65395799 65395847 -83387625 + (CA)n Simple_repeat Simple_repeat 1 48 0 316 298 32 11 chr11 65395849 65395943 -83387529 - L1ME4a LINE L1 -162 5959 5864 483 169 114 133 chr11 65396876 65396933 -83386539 - MER63 DNA MER1_type -273 789 732 2053 120 14 3 chr11 65396933 65397225 -83386247 + AluSq SINE Alu 1 295 -18 483 169 114 133 chr11 65397225 65397333 -83386139 - MER63 DNA MER1_type -330 732 1 2459 90 3 0 chr11 65397917 65398228 -83385244 - AluSx SINE Alu 0 312 1 2432 87 3 7 chr11 65398230 65398539 -83384933 - AluSx SINE Alu -4 308 1 2019 133 0 20 chr11 65399743 65400037 -83383435 - AluJb SINE Alu -24 288 1 340 206 84 99 chr11 65400144 65400275 -83383197 - MLT1H LTR MaLR 0 549 414 385 241 176 12 chr11 65400334 65400504 -83382968 - MLT1H LTR MaLR -248 301 104 1907 228 75 30 chr11 65401138 65401713 -83381759 - L1ME3 LINE L1 -4 6158 5558 378 159 0 0 chr11 65401732 65401801 -83381671 + CT-rich Low_complexity Low_complexity 4 72 0 313 297 0 0 chr11 65401842 65401933 -83381539 - L1MDa LINE L1 -3969 2571 2481 2370 105 0 0 chr11 65402528 65402832 -83380640 - AluSx SINE Alu -8 304 1 401 320 170 25 chr11 65403067 65403426 -83380046 - HAL1 LINE L1 -940 1567 1157 1118 85 0 12 chr11 65404054 65404219 -83379253 + (TTTC)n Simple_repeat Simple_repeat 2 164 0 606 109 0 0 chr11 65404220 65404312 -83379160 + (TTCC)n Simple_repeat Simple_repeat 2 93 0 852 148 0 0 chr11 65404314 65404442 -83379030 - AluJ SINE Alu -4 308 181 1109 179 0 31 chr11 65404622 65404818 -83378654 - AluJ SINE Alu -122 190 1 525 217 108 79 chr11 65404818 65405178 -83378294 + MLT1J1 LTR MaLR 29 409 0 286 252 11 20 chr11 65405355 65405461 -83378011 - L1ME3 LINE L1 -715 5406 5301 450 329 43 0 chr11 65405489 65405653 -83377819 + LTR67 LTR ERVL 97 267 -290 681 233 87 6 chr11 65405688 65405860 -83377612 + LTR67 LTR ERVL 359 544 -13 261 0 0 0 chr11 65405930 65405943 -83377529 + (TG)n Simple_repeat Simple_repeat 1 42 0 261 0 0 0 chr11 65405943 65405972 -83377500 + (TG)n Simple_repeat Simple_repeat 2 30 0 1579 139 41 16 chr11 65406090 65406367 -83377105 - AluSx SINE Alu 0 316 34 24 96 0 0 chr11 65406409 65406482 -83376990 + AT_rich Low_complexity Low_complexity 1 73 0 228 264 14 114 chr11 65406484 65406632 -83376840 - HAL1 LINE L1 -17 2490 2369 2415 113 0 0 chr11 65406632 65406943 -83376529 - AluSp SINE Alu -2 311 1 228 264 14 114 chr11 65406943 65407014 -83376458 - HAL1 LINE L1 -137 2370 2293 255 31 0 0 chr11 65407133 65407165 -83376307 + (TTTTC)n Simple_repeat Simple_repeat 1 32 0 1816 100 0 0 chr11 65407177 65407407 -83376065 - AluSx SINE Alu -82 230 1 1208 213 63 22 chr11 65407414 65407729 -83375743 - L1MA4 LINE L1 0 6300 5973 386 258 40 8 chr11 65407741 65407865 -83375607 - L1MC5 LINE L1 -491 7470 7343 759 215 0 7 chr11 65407865 65408014 -83375458 - MER58B DNA MER1_type -5 336 189 351 264 197 41 chr11 65409491 65409786 -83373686 + LTR16A1 LTR ERVL 99 439 -18 1291 330 80 25 chr11 65409896 65410772 -83372700 + HERV16 LTR ERVL 121 1056 -3940 2073 124 7 27 chr11 65410772 65411071 -83372401 - AluSx SINE Alu -18 294 2 1291 330 80 25 chr11 65411071 65411156 -83372316 + HERV16 LTR ERVL 1056 1135 -3861 909 180 79 0 chr11 65411454 65411632 -83371840 + LTR47A LTR ERVL 261 452 0 588 356 26 10 chr11 65411680 65412179 -83371293 + HERV16 LTR ERVL 1251 1820 -3176 1714 161 55 104 chr11 65412197 65412272 -83371200 - MLT1C LTR MaLR 0 467 390 2292 70 13 30 chr11 65412272 65412574 -83370898 + AluY SINE Alu 1 297 -14 1714 161 55 104 chr11 65412574 65412810 -83370662 - MLT1C LTR MaLR -77 390 186 1577 133 12 16 chr11 65412810 65413058 -83370414 - AluJo SINE Alu -17 295 49 1714 161 55 104 chr11 65413058 65413236 -83370236 - MLT1C LTR MaLR -281 186 1 1015 261 62 23 chr11 65413288 65413641 -83369831 - LTR16B LTR ERVL -6 458 92 1143 288 41 62 chr11 65413724 65414146 -83369326 + HERV16 LTR ERVL 1920 2332 -2664 2433 61 27 3 chr11 65414146 65414439 -83369033 + AluY SINE Alu 1 300 -11 1143 288 41 62 chr11 65414439 65414502 -83368970 + HERV16 LTR ERVL 2332 2395 -2601 799 50 0 0 chr11 65415438 65415538 -83367934 + HY3 scRNA scRNA 1 100 -1 491 230 142 20 chr11 65415863 65416011 -83367461 - MIR SINE MIR -82 180 15 1342 175 0 4 chr11 65418091 65418320 -83365152 + AluJb SINE Alu 85 312 0 21 0 0 0 chr11 65418344 65418365 -83365107 + AT_rich Low_complexity Low_complexity 1 21 0 2128 123 13 3 chr11 65418365 65418666 -83364806 + AluSc SINE Alu 1 304 -5 249 228 152 0 chr11 65418955 65419047 -83364425 - MIR SINE MIR -65 197 92 241 235 49 29 chr11 65419164 65419266 -83364206 + MIR SINE MIR 109 212 -50 875 154 0 21 chr11 65419269 65419412 -83364060 + FLAM_C SINE Alu 1 140 -3 2211 127 0 13 chr11 65419412 65419728 -83363744 + AluSx SINE Alu 1 312 0 2007 92 92 11 chr11 65419924 65420208 -83363264 + AluSg SINE Alu 1 307 -3 2637 149 94 16 chr11 65420778 65421268 -83362204 - MER1A DNA MER1_type -1 528 1 1863 167 0 7 chr11 65421444 65421743 -83361729 - AluJo SINE Alu -15 297 1 807 291 44 78 chr11 65421850 65422348 -83361124 + L2 LINE L2 2832 3312 -1 970 218 97 0 chr11 65422363 65422579 -83360893 - MIR SINE MIR -8 254 18 481 240 3 30 chr11 65422928 65423341 -83360131 + (TCTCTG)n Simple_repeat Simple_repeat 1 401 0 344 121 17 0 chr11 65423346 65423404 -83360068 - MLT2B1 LTR ERVL 0 520 462 2551 185 17 30 chr11 65423444 65423985 -83359487 - MLT2B3 LTR ERVL -20 534 1 541 230 16 37 chr11 65424042 65424253 -83359219 - MLT2B1 LTR ERVL -60 460 253 1763 198 71 7 chr11 65424261 65424674 -83358798 - MLT2B1 LTR ERVL -118 436 1 518 306 58 0 chr11 65424995 65425168 -83358304 - L2 LINE L2 -646 2668 2486 1734 228 44 9 chr11 65425262 65425692 -83357780 + MER70B LTR ERVL 1 445 -133 350 296 63 7 chr11 65425707 65425849 -83357623 - LTR16A1 LTR ERVL -99 358 209 466 316 96 33 chr11 65425922 65426194 -83357278 - L2 LINE L2 -831 2483 2195 311 321 38 0 chr11 65426202 65426333 -83357139 + L2 LINE L2 2930 3065 -207 285 148 0 74 chr11 65426747 65426801 -83356671 - 5S rRNA rRNA -71 50 1 352 241 0 0 chr11 65427257 65427340 -83356132 - Charlie2a DNA MER1_type -2018 844 762 1929 180 52 0 chr11 65427404 65427788 -83355684 - L1MB3 LINE L1 0 6183 5780 1616 241 55 34 chr11 65427790 65427925 -83355547 + MER74A LTR ERVL 1 132 -426 2313 39 0 3 chr11 65427925 65428207 -83355265 - L1PA4 LINE L1 -1 6154 5874 1616 241 55 34 chr11 65428207 65428601 -83354871 + MER74A LTR ERVL 132 541 -17 359 169 0 0 chr11 65428618 65428683 -83354789 - L1MB3 LINE L1 -403 5780 5716 2412 88 0 25 chr11 65428740 65429058 -83354414 + AluY SINE Alu 1 310 -1 1190 129 0 0 chr11 65429058 65429221 -83354251 + AluSg/x SINE Alu 126 288 -22 242 56 28 0 chr11 65429221 65429257 -83354215 + (GGA)n Simple_repeat Simple_repeat 1 37 0 3746 143 64 48 chr11 65429407 65429750 -83353722 - LTR39 LTR ERV1 0 783 447 2334 76 7 0 chr11 65429750 65430064 -83353408 + AluSp SINE Alu 1 316 0 3746 143 64 48 chr11 65430064 65430480 -83352992 - LTR39 LTR ERV1 -336 447 9 511 318 120 10 chr11 65430545 65430938 -83352534 - L1ME3A LINE L1 -214 5956 5521 273 310 11 0 chr11 65432754 65432841 -83350631 + MIR3 SINE MIR 98 185 -23 1953 159 10 0 chr11 65432874 65433175 -83350297 + AluJo SINE Alu 1 304 -8 522 233 33 44 chr11 65433232 65433412 -83350060 - L1M4 LINE L1 -3109 3037 2860 234 228 18 0 chr11 65433589 65433646 -83349826 + (TA)n Simple_repeat Simple_repeat 2 59 0 1058 275 66 27 chr11 65433701 65434185 -83349287 - L1MC4a LINE L1 -1934 5874 5372 2067 211 79 131 chr11 65434193 65434810 -83348662 + L1MD3 LINE L1 6736 7383 -612 195 100 0 0 chr11 65434810 65434840 -83348632 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 2067 211 79 131 chr11 65434840 65434910 -83348562 + L1MD3 LINE L1 7383 7455 -540 455 132 26 0 chr11 65434910 65434986 -83348486 + MLT1F1 LTR MaLR 54 131 -436 2067 211 79 131 chr11 65434986 65435551 -83347921 + L1MD3 LINE L1 7455 7995 0 557 269 109 55 chr11 65435551 65435734 -83347738 - L1MC4a LINE L1 -774 5372 5161 1695 171 45 11 chr11 65435734 65436020 -83347452 - AluJb SINE Alu -16 296 1 557 269 109 55 chr11 65436020 65436161 -83347311 - L1MC4a LINE L1 -985 5161 5029 1548 186 298 8 chr11 65436234 65436821 -83346651 - LTR50 LTR ERVL 0 795 39 336 307 24 8 chr11 65437171 65437298 -83346174 + LTR16C LTR ERVL 363 491 0 310 260 33 95 chr11 65437315 65437557 -83345915 + L1MEd LINE L1 792 1018 -5101 516 242 117 52 chr11 65437580 65437811 -83345661 - LTR16C LTR ERVL -113 378 133 1945 151 0 20 chr11 65438020 65438325 -83345147 + AluJb SINE Alu 1 299 -13 410 309 13 43 chr11 65438332 65438565 -83344907 - HERVL LTR ERVL -296 5358 5133 2069 322 112 66 chr11 65438690 65440616 -83342856 - HERVL LTR ERVL -815 4949 3114 1725 178 20 3 chr11 65440616 65440909 -83342563 - AluJo SINE Alu -14 298 1 258 143 122 0 chr11 65440919 65440968 -83342504 - FLAM_A SINE Alu -9 124 70 2069 322 112 66 chr11 65440968 65441522 -83341950 - HERVL LTR ERVL -2658 3106 2292 854 351 49 33 chr11 65441523 65442043 -83341429 - HERVL LTR ERVL -3425 1571 1523 2428 93 0 0 chr11 65442043 65442345 -83341127 - AluSc SINE Alu -7 302 1 854 351 49 33 chr11 65442345 65442914 -83340558 - HERVL LTR ERVL -3473 1523 965 547 282 112 24 chr11 65443134 65443428 -83340044 - L1MEd LINE L1 -5734 385 66 24 32 0 0 chr11 65443791 65443822 -83339650 + AT_rich Low_complexity Low_complexity 1 31 0 3747 186 66 4 chr11 65444846 65445606 -83337866 + MER21B LTR ERV1 12 818 -45 805 175 44 0 chr11 65445679 65445839 -83337633 - MLT1D LTR MaLR 0 505 339 505 210 101 0 chr11 65445922 65446060 -83337412 - MLT1D LTR MaLR -315 190 39 339 275 75 0 chr11 65446596 65446756 -83336716 + L2 LINE L2 2891 3062 -210 293 221 15 0 chr11 65447186 65447254 -83336218 + L1MB1 LINE L1 5567 5635 -535 1290 205 100 44 chr11 65447273 65447614 -83335858 + MER93b LTR ERV1 7 366 -7 983 239 62 67 chr11 65447751 65448141 -83335331 + MER21B LTR ERV1 326 713 -150 820 208 36 0 chr11 65448844 65449012 -83334460 + L1MB1 LINE L1 5990 6163 -5 2086 116 3 3 chr11 65449075 65449382 -83334090 - AluJb SINE Alu 0 307 1 215 170 0 19 chr11 65449863 65449916 -83333556 + CT-rich Low_complexity Low_complexity 3 54 0 1071 151 28 19 chr11 65450740 65450952 -83332520 + MLT1D LTR MaLR 1 214 -291 587 254 42 10 chr11 65450988 65451181 -83332291 + MLT1D LTR MaLR 307 505 0 398 236 9 0 chr11 65451647 65451753 -83331719 - LTR33 LTR ERVL -413 108 2 534 276 0 0 chr11 65451827 65451943 -83331529 + MIR SINE MIR 7 122 -140 1394 164 14 25 chr11 65452420 65452695 -83330777 - AluJb SINE Alu -40 272 1 4173 151 58 53 chr11 65452834 65453136 -83330336 + MER21B LTR ERV1 1 300 -563 2260 123 0 6 chr11 65453136 65453486 -83329986 + L1PB1 LINE L1 5796 6143 -8 4173 151 58 53 chr11 65453486 65454038 -83329434 + MER21B LTR ERV1 300 860 -3 5549 208 68 21 chr11 65454234 65455607 -83327865 + L1MC4 LINE L1 6458 7895 -147 834 174 0 0 chr11 65455654 65455786 -83327686 - FLAM_C SINE Alu -1 132 1 402 295 104 45 chr11 65455889 65456379 -83327093 + L1MEc LINE L1 1858 2564 -3651 1588 105 26 9 chr11 65456393 65456621 -83326851 + AluSg/x SINE Alu 79 310 0 1258 147 0 16 chr11 65456660 65456851 -83326621 + AluSq SINE Alu 1 188 -125 244 340 128 19 chr11 65457059 65457215 -83326257 + L2 LINE L2 3117 3289 -24 180 0 0 0 chr11 65457324 65457344 -83326128 + (A)n Simple_repeat Simple_repeat 1 20 0 1538 221 113 40 chr11 65457353 65457692 -83325780 - MER82 DNA MER2_type -148 505 121 2383 108 0 0 chr11 65457692 65457997 -83325475 + AluSx SINE Alu 1 305 -7 1538 221 113 40 chr11 65457997 65458128 -83325344 - MER82 DNA MER2_type -532 121 1 243 189 38 0 chr11 65458243 65458296 -83325176 + MLT1A2 LTR MaLR 1 55 -319 414 319 92 75 chr11 65460063 65460273 -83323199 - L1M4 LINE L1 -3003 3143 2938 216 0 0 0 chr11 65460273 65460297 -83323175 + (TTA)n Simple_repeat Simple_repeat 1 24 0 414 319 92 75 chr11 65460297 65460474 -83322998 - L1M4 LINE L1 -3208 2938 2766 2225 117 3 25 chr11 65460474 65460791 -83322681 + AluSx SINE Alu 1 310 -2 414 319 92 75 chr11 65460791 65460976 -83322496 - L1M4 LINE L1 -3380 2766 2560 252 122 0 0 chr11 65460986 65461027 -83322445 + (CATATA)n Simple_repeat Simple_repeat 3 43 0 323 204 57 0 chr11 65461036 65461124 -83322348 - AluSc SINE Alu -5 294 202 2036 129 10 19 chr11 65461232 65461541 -83321931 + AluJb SINE Alu 1 306 -6 2042 118 3 17 chr11 65461655 65461816 -83321656 - AluSc SINE Alu -17 292 135 2431 80 0 3 chr11 65461816 65462116 -83321356 - AluY SINE Alu -12 299 1 2042 118 3 17 chr11 65462116 65462250 -83321222 - AluSc SINE Alu -174 135 1 2015 142 0 0 chr11 65462279 65462598 -83320874 + AluSx SINE Alu 1 319 0 238 262 82 78 chr11 65462762 65463139 -83320333 + L1MDb LINE L1 1108 1488 -4908 604 210 151 0 chr11 65463692 65463897 -83319575 - MER20B DNA MER1_type -6 777 542 254 208 253 26 chr11 65464277 65464431 -83319041 + MLT1H LTR MaLR 136 324 -225 329 206 84 99 chr11 65464473 65464604 -83318868 + MLT1H LTR MaLR 414 549 0 1691 161 7 20 chr11 65464711 65465003 -83318469 + AluJb SINE Alu 1 288 -24 2372 86 3 7 chr11 65466206 65466507 -83316965 + AluSx SINE Alu 1 300 -12 390 205 0 0 chr11 65466514 65466592 -83316880 + MER82 DNA MER2_type 570 647 -6 445 255 195 0 chr11 65467115 65467264 -83316208 - MER45A DNA AcHobo 0 178 1 205 369 94 7 chr11 65467604 65467753 -83315719 - L2 LINE L2 -4 3268 3107 744 120 26 0 chr11 65467843 65467960 -83315512 + MLT2B2 LTR ERVL 388 507 -8 2033 119 7 17 chr11 65468315 65468609 -83314863 + AluSq SINE Alu 1 291 -22 237 301 96 44 chr11 65469376 65469605 -83313867 - L2 LINE L2 -1473 1841 1601 3558 127 6 0 chr11 65469620 65470162 -83313310 + MER41B LTR ERV1 3 547 -88 1235 185 87 109 chr11 65470162 65470622 -83312850 + LTR7 LTR ERV1 1 450 0 484 218 0 0 chr11 65470623 65470710 -83312762 + MER41A LTR ERV1 468 554 0 365 288 103 45 chr11 65470813 65471056 -83312416 + MER20B DNA MER1_type 38 294 -489 1816 146 13 32 chr11 65471061 65471376 -83312096 - AluJo SINE Alu -1 311 3 711 220 0 0 chr11 65471376 65471508 -83311964 - AluJo SINE Alu -176 136 5 478 297 16 0 chr11 65471648 65471776 -83311696 - MER20B DNA MER1_type -344 439 310 3104 220 59 45 chr11 65472271 65472771 -83310701 + L1ME2 LINE L1 4270 4762 -1422 2218 99 7 0 chr11 65472771 65473073 -83310399 + AluSx SINE Alu 1 304 -8 3104 220 59 45 chr11 65473073 65473728 -83309744 + L1ME2 LINE L1 4762 5406 -778 1608 181 28 0 chr11 65473728 65474016 -83309456 + AluJo SINE Alu 1 296 -16 3104 220 59 45 chr11 65474016 65474567 -83308905 + L1ME2 LINE L1 5406 6180 -4 2064 145 3 0 chr11 65474790 65475100 -83308372 + AluSp SINE Alu 1 311 -2 1581 189 7 113 chr11 65475137 65475545 -83307927 + MLT1A1 LTR MaLR 1 365 0 515 209 63 89 chr11 65475934 65476080 -83307392 + LTR16A1 LTR ERVL 272 413 -44 2071 133 0 0 chr11 65476080 65476381 -83307091 + AluSx SINE Alu 1 301 -11 515 209 63 89 chr11 65476381 65476425 -83307047 + LTR16A1 LTR ERVL 413 457 0 269 254 16 0 chr11 65476936 65476999 -83306473 - MIR SINE MIR 0 262 199 1609 126 122 4 chr11 65477877 65478148 -83305324 - AluJo SINE Alu -9 303 1 1588 110 4 13 chr11 65478239 65478475 -83304997 - AluSc SINE Alu -75 234 1 1153 237 78 82 chr11 65478508 65478972 -83304500 + MLT1C LTR MaLR 6 467 0 2292 95 0 3 chr11 65480445 65480749 -83302723 - AluSx SINE Alu -9 303 1 1030 165 15 15 chr11 65480779 65480979 -83302493 + MLT1B LTR MaLR 1 200 -190 524 202 109 80 chr11 65481008 65481488 -83301984 - MER66B LTR ERV1 0 486 97 988 181 11 0 chr11 65481489 65481666 -83301806 + MLT1B LTR MaLR 212 390 0 2223 104 13 0 chr11 65482011 65482319 -83301153 + AluSp SINE Alu 1 312 -1 476 264 102 37 chr11 65482324 65482619 -83300853 + L1ME4a LINE L1 5593 5906 -215 23 0 0 0 chr11 65482790 65482813 -83300659 + AT_rich Low_complexity Low_complexity 1 23 0 451 300 45 29 chr11 65482925 65483140 -83300332 + L1MC/D LINE L1 5467 5682 -459 201 147 0 0 chr11 65483480 65483514 -83299958 + (A)n Simple_repeat Simple_repeat 1 34 0 436 277 27 7 chr11 65483591 65483739 -83299733 + HAL1b LINE L1 1198 1348 0 1910 174 125 7 chr11 65484497 65484906 -83298566 - MLT1C LTR MaLR 0 467 11 1646 189 31 0 chr11 65485443 65485729 -83297743 + AluJb SINE Alu 1 295 -17 769 216 6 6 chr11 65485799 65485966 -83297506 + ERVL LTR ERVL 3750 3916 -1848 237 33 0 0 chr11 65485978 65486008 -83297464 + (TTG)n Simple_repeat Simple_repeat 2 31 0 2036 107 0 0 chr11 65486012 65486284 -83297188 - AluSc SINE Alu -37 272 1 2606 238 81 39 chr11 65486305 65486781 -83296691 - MER21B LTR ERV1 -61 802 281 1789 144 48 0 chr11 65486781 65487072 -83296400 - AluSx SINE Alu -7 305 1 2606 238 81 39 chr11 65487072 65487348 -83296124 - MER21B LTR ERV1 -582 281 18 1274 134 9 43 chr11 65487423 65487655 -83295817 + AluJb SINE Alu 87 310 -2 2168 102 3 3 chr11 65487715 65488018 -83295454 + AluSp SINE Alu 1 303 -10 416 229 189 20 chr11 65488115 65488316 -83295156 - MLT1J LTR MaLR -177 334 100 2169 93 10 3 chr11 65490676 65490977 -83292495 + AluSx SINE Alu 1 303 -9 247 269 90 0 chr11 65492481 65492559 -83290913 + L2 LINE L2 3157 3241 -31 2199 97 0 7 chr11 65492638 65492947 -83290525 - AluSg1 SINE Alu -2 307 1 2003 102 13 38 chr11 65494036 65494349 -83289123 + AluSx SINE Alu 1 305 -7 285 342 18 9 chr11 65497485 65497599 -83285873 + MIR SINE MIR 32 146 -62 256 281 12 12 chr11 65498324 65498406 -83285066 - L3 LINE CR1 -125 1452 1371 1388 254 230 28 chr11 65499262 65500368 -83283104 + L2 LINE L2 1888 3286 -27 2347 78 0 0 chr11 65500505 65500799 -83282673 + AluSx SINE Alu 1 294 -18 1321 91 0 0 chr11 65500799 65500974 -83282498 + AluSp SINE Alu 134 308 -5 2034 99 32 0 chr11 65500974 65501257 -83282215 + AluSg SINE Alu 1 292 -18 2140 72 0 0 chr11 65501267 65501544 -83281928 + AluSg SINE Alu 25 301 -9 257 344 11 0 chr11 65501636 65501729 -83281743 + L2 LINE L2 3182 3275 -38 416 248 155 37 chr11 65501764 65501925 -83281547 + MIR SINE MIR 67 246 -16 2192 102 0 7 chr11 65502108 65502413 -83281059 + AluSq SINE Alu 1 303 -10 2291 74 7 0 chr11 65502416 65502712 -83280760 + AluY SINE Alu 1 298 -13 594 221 197 29 chr11 65502785 65502993 -83280479 + MIR SINE MIR 2 244 -18 2085 122 0 3 chr11 65502995 65503298 -83280174 - AluSg SINE Alu -8 302 1 24 0 0 0 chr11 65503298 65503322 -83280150 + AT_rich Low_complexity Low_complexity 1 24 0 2197 84 3 13 chr11 65503499 65503798 -83279674 - AluSg SINE Alu -13 297 2 2175 113 13 0 chr11 65503809 65504118 -83279354 - AluSq SINE Alu 0 313 1 2375 54 14 0 chr11 65504118 65504412 -83279060 - AluY SINE Alu -13 298 1 2138 98 0 26 chr11 65504412 65504718 -83278754 - AluSx SINE Alu -14 298 1 1824 126 4 0 chr11 65504796 65505059 -83278413 + AluSx SINE Alu 38 301 -11 226 186 0 70 chr11 65507122 65507208 -83276264 + (CCCG)n Simple_repeat Simple_repeat 2 81 0 22 0 0 0 chr11 65507277 65507299 -83276173 + GC_rich Low_complexity Low_complexity 1 22 0 2436 66 0 0 chr11 65507530 65507832 -83275640 - AluY SINE Alu -9 302 1 716 167 8 38 chr11 65508075 65508207 -83275265 - FLAM_C SINE Alu -5 128 1 2137 99 10 0 chr11 65508270 65508562 -83274910 - AluSx SINE Alu -17 295 1 532 251 51 64 chr11 65508650 65508885 -83274587 - MER102b DNA MER1_type -3 338 107 1749 153 38 0 chr11 65508899 65509186 -83274286 + AluJb SINE Alu 1 298 -14 1990 111 0 10 chr11 65509329 65509617 -83273855 - AluSx SINE Alu -27 285 1 2113 103 3 0 chr11 65509660 65509960 -83273512 + AluSp SINE Alu 1 301 -12 185 235 0 39 chr11 65510342 65510393 -83273079 - MIR SINE MIR -194 68 20 845 111 0 0 chr11 65510467 65510584 -83272888 + FRAM SINE Alu 35 151 -25 2259 71 3 3 chr11 65510593 65510888 -83272584 + AluSx SINE Alu 1 295 -17 27 29 0 0 chr11 65510892 65510926 -83272546 + AT_rich Low_complexity Low_complexity 1 34 0 231 259 117 32 chr11 65511212 65511322 -83272150 - MIR SINE MIR -45 163 42 563 292 136 37 chr11 65511844 65512299 -83271173 + MLT1K LTR MaLR 65 564 -24 450 204 0 0 chr11 65512390 65512478 -83270994 - Tigger5 DNA MER2_type -2235 88 1 398 235 0 0 chr11 65512491 65512576 -83270896 + Tigger5 DNA MER2_type 2239 2323 0 2457 50 7 0 chr11 65513898 65514201 -83269271 - AluSg SINE Alu -5 305 1 2239 90 10 6 chr11 65515704 65516015 -83267457 - AluSx SINE Alu 0 312 1 195 42 0 0 chr11 65516739 65516763 -83266709 + (CAGCC)n Simple_repeat Simple_repeat 4 27 0 2348 82 0 0 chr11 65517412 65517706 -83265766 + AluSp SINE Alu 1 294 -19 943 179 0 0 chr11 65517708 65517864 -83265608 + AluJo/FRAM SINE Alu 132 287 -25 39 0 0 0 chr11 65517865 65517904 -83265568 + AT_rich Low_complexity Low_complexity 1 39 0 197 243 0 100 chr11 65517931 65518001 -83265471 + L2 LINE L2 3251 3313 0 290 356 95 28 chr11 65518286 65518519 -83264953 - L2 LINE L2 -296 3017 2772 2174 99 0 7 chr11 65518556 65518858 -83264614 + AluSc SINE Alu 1 300 -9 2260 110 0 0 chr11 65518969 65519270 -83264202 - AluSx SINE Alu -11 301 1 317 258 52 0 chr11 65519843 65519940 -83263532 + MLT1K LTR MaLR 2 103 -485 * 413 231 183 86 chr11 65519936 65519974 -83263498 + MLT1K LTR MaLR 246 279 -309 2097 107 0 44 chr11 65519974 65520292 -83263180 + AluSq SINE Alu 1 304 -9 413 231 183 86 chr11 65520292 65520520 -83262952 + MLT1K LTR MaLR 279 538 -50 465 295 30 98 chr11 65520520 65520988 -83262484 + MLT1J LTR MaLR 1 436 -75 2046 125 16 7 chr11 65521235 65521540 -83261932 + AluSg SINE Alu 1 308 -2 212 361 41 0 chr11 65521775 65521872 -83261600 + MIR SINE MIR 162 262 0 505 285 91 27 chr11 65521926 65522056 -83261416 + MIR SINE MIR 23 170 -92 2107 119 0 0 chr11 65522056 65522349 -83261123 + AluSx SINE Alu 1 293 -19 505 285 91 27 chr11 65522349 65522404 -83261068 + MIR SINE MIR 170 220 -42 278 349 123 0 chr11 65522686 65522832 -83260640 + MIR3 SINE MIR 45 208 0 22 80 0 0 chr11 65525793 65525843 -83257629 + GC_rich Low_complexity Low_complexity 1 50 0 265 304 39 49 chr11 65528135 65528339 -83255133 + L2 LINE L2 2945 3146 -167 1826 128 7 0 chr11 65528431 65528705 -83254767 - AluSx SINE Alu -3 309 34 756 201 36 71 chr11 65528705 65528740 -83254732 + Charlie5 DNA MER1_type 2370 2405 -219 1731 74 114 52 chr11 65528740 65529011 -83254461 + AluSx SINE Alu 11 298 -14 756 201 36 71 chr11 65529011 65529199 -83254273 + Charlie5 DNA MER1_type 2405 2624 0 240 243 157 0 chr11 65529258 65529328 -83254144 + L2 LINE L2 3233 3313 0 259 351 6 11 chr11 65530171 65530345 -83253127 + G-rich Low_complexity Low_complexity 3 175 0 375 333 55 16 chr11 65530433 65530616 -83252856 + MIR3 SINE MIR 4 193 -15 22 80 0 0 chr11 65530937 65530987 -83252485 + GC_rich Low_complexity Low_complexity 1 50 0 2057 105 0 43 chr11 65534143 65534318 -83249154 - AluSx SINE Alu -13 299 141 2061 102 0 55 chr11 65534318 65534643 -83248829 - AluY SINE Alu -4 307 1 2057 105 0 43 chr11 65534643 65534772 -83248700 - AluSx SINE Alu -171 141 8 217 228 0 18 chr11 65535498 65535555 -83247917 + (CACCC)n Simple_repeat Simple_repeat 1 56 0 250 307 168 0 chr11 65535755 65535856 -83247616 + MIR SINE MIR 30 147 -61 234 262 33 0 chr11 65535959 65536020 -83247452 + MIR3 SINE MIR 92 154 -54 189 0 0 0 chr11 65537016 65537037 -83246435 + (A)n Simple_repeat Simple_repeat 1 21 0 274 153 0 0 chr11 65537037 65537092 -83246380 + THE1A LTR MaLR 308 355 0 2154 187 101 2 chr11 65537092 65537583 -83245889 - L1M3 LINE L1 -424 5759 5318 1893 119 61 0 chr11 65537583 65537860 -83245612 + AluSx SINE Alu 1 294 -18 2154 187 101 2 chr11 65537860 65538147 -83245325 - L1M3 LINE L1 -865 5318 4890 2053 119 30 7 chr11 65538147 65538442 -83245030 - AluSx SINE Alu -10 302 1 2154 187 101 2 chr11 65538442 65538457 -83245015 - L1M3 LINE L1 -1293 4890 4878 248 194 312 11 chr11 65539501 65539687 -83243785 + L2 LINE L2 1220 1461 -1853 590 291 132 25 chr11 65539756 65540082 -83243390 + L2 LINE L2 1712 2072 -1242 194 258 45 0 chr11 65540138 65540204 -83243268 + L2 LINE L2 2226 2294 -1020 792 67 42 0 chr11 65540209 65540328 -83243144 - MER41A LTR ERV1 0 554 431 1071 61 0 0 chr11 65540328 65540459 -83243013 + AluSg SINE Alu 1 131 -179 2354 73 0 13 chr11 65540462 65540598 -83242874 + AluSx SINE Alu 1 137 -175 2209 108 3 3 chr11 65540598 65540905 -83242567 + AluSx SINE Alu 1 307 -5 2354 73 0 13 chr11 65540905 65541069 -83242403 + AluSx SINE Alu 137 297 -15 3077 78 2 0 chr11 65541075 65541510 -83241962 - MER41A LTR ERV1 -118 436 1 259 205 295 25 chr11 65541514 65541636 -83241836 + L2 LINE L2 2301 2455 -859 3354 173 77 28 chr11 65541640 65541960 -83241512 + L1MB5 LINE L1 5364 5667 -507 1573 195 3 30 chr11 65541960 65542163 -83241309 + AluJb SINE Alu 1 189 -123 2181 81 27 3 chr11 65542163 65542460 -83241012 + AluSp SINE Alu 1 304 -9 1573 195 3 30 chr11 65542460 65542581 -83240891 + AluJb SINE Alu 189 312 0 3354 173 77 28 chr11 65542581 65543025 -83240447 + L1MB5 LINE L1 5667 6166 -8 711 279 66 86 chr11 65543038 65543147 -83240325 + L2 LINE L2 2456 2566 -748 2111 103 19 16 chr11 65543147 65543458 -83240014 + AluSx SINE Alu 1 312 0 207 0 0 0 chr11 65543463 65543486 -83239986 + (CA)n Simple_repeat Simple_repeat 2 24 0 711 279 66 86 chr11 65543486 65543826 -83239646 + L2 LINE L2 2570 2902 -412 585 338 70 18 chr11 65543889 65544161 -83239311 + L2 LINE L2 3028 3313 0 317 333 0 34 chr11 65545044 65545161 -83238311 + L1MC4a LINE L1 5974 6086 -1722 1328 128 55 38 chr11 65545908 65546188 -83237284 - MER31A LTR ERV1 0 485 90 2241 100 7 7 chr11 65546188 65546489 -83236983 - AluSx SINE Alu -11 301 1 1328 128 55 38 chr11 65546489 65546580 -83236892 - MER31A LTR ERV1 -395 90 2 1601 151 30 30 chr11 65546670 65546968 -83236504 + AluJb SINE Alu 1 298 -14 783 162 0 0 chr11 65547143 65547392 -83236080 + (CA)n Simple_repeat Simple_repeat 1 249 0 2194 96 3 7 chr11 65547823 65548124 -83235348 + AluSp SINE Alu 1 300 -13 1828 179 8 54 chr11 65548154 65548544 -83234928 - MER77 LTR ERV1 -233 372 1 776 253 18 85 chr11 65549007 65549181 -83234291 - MIR SINE MIR 0 262 113 1305 187 0 138 chr11 65549181 65549528 -83233944 + AluY SINE Alu 1 299 -2 776 253 18 85 chr11 65549528 65549634 -83233838 - MIR SINE MIR -149 113 1 2437 83 0 0 chr11 65549816 65550128 -83233344 + AluSx SINE Alu 1 312 0 1020 188 220 33 chr11 65550843 65551274 -83232198 - LTR50 LTR ERVL 0 795 446 2156 109 0 0 chr11 65551274 65551656 -83231816 - AluSq SINE Alu 0 382 1 1020 188 220 33 chr11 65551656 65551814 -83231658 - LTR50 LTR ERVL -349 446 3 1833 174 37 72 chr11 65551956 65552359 -83231113 - MLT1B LTR MaLR 0 390 2 3658 273 54 33 chr11 65552611 65552720 -83230752 - ERVL LTR ERVL -681 5083 4978 2371 80 3 6 chr11 65552720 65553034 -83230438 - AluSp SINE Alu 0 313 1 3658 273 54 33 chr11 65553034 65554100 -83229372 - ERVL LTR ERVL -786 4978 3872 1027 206 56 9 chr11 65554100 65554314 -83229158 - MER58A DNA MER1_type 0 224 1 3658 273 54 33 chr11 65554314 65554525 -83228947 - ERVL LTR ERVL -1892 3872 3667 1049 303 52 10 chr11 65554721 65555121 -83228351 + LTR16A LTR ERVL 28 444 -6 752 286 15 45 chr11 65555133 65555208 -83228264 - ERVL LTR ERVL -2276 3378 3302 2139 107 0 14 chr11 65555208 65555523 -83227949 - AluSp SINE Alu 0 311 1 752 286 15 45 chr11 65555523 65555782 -83227690 - ERVL LTR ERVL -2352 3302 3053 752 171 57 17 chr11 65555797 65555973 -83227499 + MSTD LTR MaLR 156 338 -58 2601 300 27 18 chr11 65556023 65556227 -83227245 - ERVL LTR ERVL -2773 2991 2790 1835 195 84 11 chr11 65556227 65556596 -83226876 - MSTD LTR MaLR 0 396 1 2601 300 27 18 chr11 65556596 65557341 -83226131 - ERVL LTR ERVL -2974 2790 2033 2128 115 3 3 chr11 65557356 65557660 -83225812 + AluSx SINE Alu 1 304 -8 493 287 90 19 chr11 65558420 65558688 -83224784 + L1MC4a LINE L1 5600 5886 -1922 1796 145 7 14 chr11 65558727 65559037 -83224435 + AluJb SINE Alu 3 310 0 1061 165 0 0 chr11 65559037 65559201 -83224271 + AluJb SINE Alu 134 297 -15 445 255 195 0 chr11 65759659 65759808 -83023664 + MER45A DNA AcHobo 1 178 0 1804 240 84 57 chr11 65760331 65760416 -83023056 - MER82 DNA MER2_type -6 647 566 2274 102 0 13 chr11 65760416 65760719 -83022753 - AluY SINE Alu -12 299 1 1804 240 84 57 chr11 65760719 65761131 -83022341 - MER82 DNA MER2_type -87 566 127 2383 108 0 0 chr11 65761131 65761436 -83022036 + AluSx SINE Alu 1 305 -7 1804 240 84 57 chr11 65761436 65761567 -83021905 - MER82 DNA MER2_type -526 127 1 243 189 38 0 chr11 65761682 65761735 -83021737 + MLT1A2 LTR MaLR 1 55 -319 487 295 88 100 chr11 65763502 65763712 -83019760 - L1MEc LINE L1 -3003 3212 3001 216 0 0 0 chr11 65763712 65763736 -83019736 + (TTA)n Simple_repeat Simple_repeat 1 24 0 487 295 88 100 chr11 65763736 65763913 -83019559 - L1MEc LINE L1 -3214 3001 2823 2225 117 3 25 chr11 65763913 65764230 -83019242 + AluSx SINE Alu 1 310 -2 487 295 88 100 chr11 65764230 65764477 -83018995 - L1MEc LINE L1 -3392 2823 2575 2058 143 3 0 chr11 65764477 65764771 -83018701 - AluSx SINE Alu -17 295 1 487 295 88 100 chr11 65764771 65764810 -83018662 - L1MEc LINE L1 -3640 2575 2537 1588 105 26 9 chr11 65764810 65765038 -83018434 - AluSg/x SINE Alu 0 312 81 487 295 88 100 chr11 65765038 65765542 -83017930 - L1MEc LINE L1 -3678 2537 1858 834 174 0 0 chr11 65765645 65765777 -83017695 + FLAM_C SINE Alu 1 132 -1 5549 208 68 21 chr11 65765824 65767197 -83016275 - L1MC4 LINE L1 -147 7895 6458 4246 151 59 44 chr11 65767393 65767937 -83015535 - MER21B LTR ERV1 -3 860 297 2476 103 0 8 chr11 65767937 65768295 -83015177 - L1PB1 LINE L1 -1 6150 5796 4246 151 59 44 chr11 65768295 65768597 -83014875 - MER21B LTR ERV1 -566 297 1 2036 129 10 19 chr11 65768736 65769045 -83014427 + AluJb SINE Alu 1 306 -6 2042 118 3 17 chr11 65769159 65769320 -83014152 - AluSc SINE Alu -17 292 135 2473 73 0 3 chr11 65769320 65769620 -83013852 - AluY SINE Alu -12 299 1 2042 118 3 17 chr11 65769620 65769754 -83013718 - AluSc SINE Alu -174 135 1 2015 142 0 0 chr11 65769783 65770102 -83013370 + AluSx SINE Alu 1 319 0 238 262 82 78 chr11 65770266 65770643 -83012829 + L1MDb LINE L1 1108 1488 -4908 604 210 151 0 chr11 65771196 65771401 -83012071 - MER20B DNA MER1_type -6 777 542 325 249 47 67 chr11 65771393 65771586 -83011886 - MER20B DNA MER1_type -363 420 232 * 386 303 61 36 chr11 65771677 65771842 -83011630 - MER20B DNA MER1_type -572 211 43 197 234 0 78 chr11 65772249 65772313 -83011159 - L2 LINE L2 -96 3217 3159 2580 149 94 16 chr11 65772922 65773412 -83010060 - MER1A DNA MER1_type -1 528 1 1881 164 0 7 chr11 65773588 65773887 -83009585 - AluJo SINE Alu -15 297 1 903 285 46 80 chr11 65773994 65774492 -83008980 + L2 LINE L2 2832 3312 -1 1033 218 97 0 chr11 65774507 65774723 -83008749 - MIR SINE MIR -8 254 18 481 234 6 27 chr11 65775072 65775485 -83007987 + (TCTCTG)n Simple_repeat Simple_repeat 1 404 0 344 121 17 0 chr11 65775490 65775548 -83007924 - MLT2B1 LTR ERVL 0 520 462 2551 185 17 30 chr11 65775588 65776129 -83007343 - MLT2B3 LTR ERVL -20 534 1 541 230 16 37 chr11 65776186 65776397 -83007075 - MLT2B1 LTR ERVL -60 460 253 1763 198 71 7 chr11 65776405 65776818 -83006654 - MLT2B1 LTR ERVL -118 436 1 518 306 58 0 chr11 65777139 65777312 -83006160 - L2 LINE L2 -646 2668 2486 1734 228 44 9 chr11 65777406 65777836 -83005636 + MER70B LTR ERVL 1 445 -133 350 296 63 7 chr11 65777851 65777993 -83005479 - LTR16A1 LTR ERVL -99 358 209 466 316 96 33 chr11 65778066 65778338 -83005134 - L2 LINE L2 -831 2483 2195 311 321 38 0 chr11 65778346 65778477 -83004995 + L2 LINE L2 2930 3065 -207 285 148 0 74 chr11 65778891 65778945 -83004527 - 5S rRNA rRNA -71 50 1 352 241 0 0 chr11 65779400 65779483 -83003989 - Charlie2a DNA MER1_type -2018 844 762 1929 180 52 0 chr11 65779547 65779931 -83003541 - L1MB3 LINE L1 0 6183 5780 1616 241 55 34 chr11 65779933 65780068 -83003404 + MER74A LTR ERVL 1 132 -426 2313 39 0 3 chr11 65780068 65780350 -83003122 - L1PA4 LINE L1 -1 6154 5874 1616 241 55 34 chr11 65780350 65780744 -83002728 + MER74A LTR ERVL 132 541 -17 359 169 0 0 chr11 65780761 65780826 -83002646 - L1MB3 LINE L1 -391 5780 5716 2412 88 0 25 chr11 65780883 65781201 -83002271 + AluY SINE Alu 1 310 -1 1190 129 0 0 chr11 65781201 65781364 -83002108 + AluSg/x SINE Alu 128 290 -22 242 56 28 0 chr11 65781364 65781400 -83002072 + (GGA)n Simple_repeat Simple_repeat 1 37 0 3746 143 64 48 chr11 65781550 65781893 -83001579 - LTR39 LTR ERV1 0 783 447 2334 76 7 0 chr11 65781893 65782207 -83001265 + AluSp SINE Alu 1 316 0 3746 143 64 48 chr11 65782207 65782623 -83000849 - LTR39 LTR ERV1 -336 447 9 511 318 120 10 chr11 65782688 65783081 -83000391 - L1ME3A LINE L1 -214 5956 5521 273 310 11 0 chr11 65784897 65784984 -82998488 + MIR3 SINE MIR 98 185 -23 1953 159 10 0 chr11 65785017 65785318 -82998154 + AluJo SINE Alu 1 304 -8 522 233 33 44 chr11 65785375 65785555 -82997917 - L1M4 LINE L1 -3109 3037 2860 234 228 18 0 chr11 65785732 65785789 -82997683 + (TA)n Simple_repeat Simple_repeat 2 59 0 1058 275 66 27 chr11 65785844 65786328 -82997144 - L1MC4a LINE L1 -1934 5874 5372 2067 211 79 131 chr11 65786336 65786953 -82996519 + L1MD3 LINE L1 6736 7383 -612 195 100 0 0 chr11 65786953 65786983 -82996489 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 2067 211 79 131 chr11 65786983 65787053 -82996419 + L1MD3 LINE L1 7383 7455 -540 455 132 26 0 chr11 65787053 65787129 -82996343 + MLT1F1 LTR MaLR 54 131 -436 2067 211 79 131 chr11 65787129 65787694 -82995778 + L1MD3 LINE L1 7455 7995 0 557 269 109 55 chr11 65787694 65787877 -82995595 - L1MC4a LINE L1 -774 5372 5161 1695 171 45 11 chr11 65787877 65788163 -82995309 - AluJb SINE Alu -16 296 1 557 269 109 55 chr11 65788163 65788304 -82995168 - L1MC4a LINE L1 -985 5161 5029 1708 186 284 8 chr11 65788377 65789000 -82994472 - LTR50 LTR ERVL 0 795 1 336 307 24 8 chr11 65789216 65789343 -82994129 + LTR16C LTR ERVL 363 491 0 310 260 33 95 chr11 65789360 65789602 -82993870 + L1MEd LINE L1 792 1018 -5101 516 242 117 52 chr11 65789625 65789856 -82993616 - LTR16C LTR ERVL -113 378 133 1945 151 0 20 chr11 65790065 65790370 -82993102 + AluJb SINE Alu 1 299 -13 410 309 13 43 chr11 65790377 65790610 -82992862 - HERVL LTR ERVL -296 5358 5133 2069 322 112 66 chr11 65790735 65792661 -82990811 - HERVL LTR ERVL -815 4949 3114 1725 178 20 3 chr11 65792661 65792954 -82990518 - AluJo SINE Alu -14 298 1 258 143 122 0 chr11 65792964 65793013 -82990459 - FLAM SINE Alu -8 125 71 2069 322 112 66 chr11 65793013 65793567 -82989905 - HERVL LTR ERVL -2658 3106 2292 854 351 49 33 chr11 65793568 65794088 -82989384 - HERVL LTR ERVL -3425 1571 1523 2428 93 0 0 chr11 65794088 65794390 -82989082 - AluSc SINE Alu -7 302 1 854 351 49 33 chr11 65794390 65794959 -82988513 - HERVL LTR ERVL -3473 1523 965 547 282 112 24 chr11 65795179 65795473 -82987999 - L1MEd LINE L1 -5734 385 66 24 32 0 0 chr11 65795836 65795867 -82987605 + AT_rich Low_complexity Low_complexity 1 31 0 3747 186 66 4 chr11 65796891 65797651 -82985821 + MER21B LTR ERV1 12 818 -45 805 175 44 0 chr11 65797724 65797884 -82985588 - MLT1D LTR MaLR 0 505 339 505 210 101 0 chr11 65797967 65798105 -82985367 - MLT1D LTR MaLR -315 190 39 339 275 75 0 chr11 65798641 65798801 -82984671 + L2 LINE L2 2891 3062 -210 293 221 15 0 chr11 65799231 65799299 -82984173 + L1MC4a LINE L1 5567 5635 -535 1290 205 100 44 chr11 65799318 65799659 -82983813 + MER93b LTR ERV1 7 366 -7 983 239 62 67 chr11 65799796 65800186 -82983286 + MER21B LTR ERV1 326 713 -150 820 208 36 0 chr11 65800889 65801057 -82982415 + L1MB1 LINE L1 5990 6163 -5 2086 116 3 3 chr11 65801120 65801427 -82982045 - AluJb SINE Alu 0 307 1 215 170 0 19 chr11 65801908 65801961 -82981511 + CT-rich Low_complexity Low_complexity 3 54 0 1071 151 28 19 chr11 65802785 65802997 -82980475 + MLT1D LTR MaLR 1 214 -291 587 254 42 10 chr11 65803033 65803226 -82980246 + MLT1D LTR MaLR 307 505 0 398 236 9 0 chr11 65803692 65803798 -82979674 - LTR33 LTR ERVL -413 108 2 534 276 0 0 chr11 65803872 65803988 -82979484 + MIR SINE MIR 7 122 -140 1842 208 31 13 chr11 65804776 65805165 -82978307 - MSTD LTR MaLR 0 396 1 262 250 17 0 chr11 65805561 65805621 -82977851 + Charlie7 DNA MER1_type 41 101 -2511 216 250 0 39 chr11 65805799 65805851 -82977621 - L2 LINE L2 -20 3293 3244 315 320 16 0 chr11 65806200 65806322 -82977150 + L1MC4a LINE L1 5768 5891 -1917 262 298 98 11 chr11 65806619 65806795 -82976677 - MIR SINE MIR -35 227 29 218 139 0 0 chr11 65807856 65807892 -82975580 - L2 LINE L2 0 3313 3278 546 163 10 0 chr11 65807976 65808074 -82975398 + MER51A LTR ERV1 455 553 -81 335 209 87 0 chr11 65808350 65808465 -82975007 - LTR16A LTR ERVL -93 357 233 305 318 164 21 chr11 65808553 65808658 -82974814 + L2 LINE L2 2983 3072 -241 1704 97 4 9 chr11 65808658 65808884 -82974588 - AluSg/x SINE Alu 0 310 86 305 318 164 21 chr11 65808884 65809058 -82974414 + L2 LINE L2 3072 3302 -11 183 42 0 0 chr11 65809059 65809083 -82974389 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 895 239 82 31 chr11 65809174 65809526 -82973946 + L1M4 LINE L1 4196 4565 -1581 562 202 13 97 chr11 65809785 65809865 -82973607 + MIR SINE MIR 18 82 -180 1636 142 58 44 chr11 65809865 65810160 -82973312 - AluJo SINE Alu -11 301 3 562 202 13 97 chr11 65810160 65810245 -82973227 + MIR SINE MIR 82 173 -89 1305 239 42 32 chr11 65810332 65810589 -82972883 - MER89 LTR ERV1 -2 557 293 2189 126 0 3 chr11 65810589 65810899 -82972573 - AluSc SINE Alu 0 309 1 1305 239 42 32 chr11 65810899 65811021 -82972451 - MER89 LTR ERV1 -266 293 174 224 288 0 17 chr11 65811384 65811443 -82972029 + MIR SINE MIR 21 78 -184 924 135 0 0 chr11 65812055 65812188 -82971284 - FLAM_C SINE Alu 0 133 1 868 267 51 10 chr11 65812264 65812560 -82970912 - MER113 DNA MER1_type? -213 308 1 678 260 58 10 chr11 65812694 65812902 -82970570 - MIR SINE MIR -22 240 23 2916 157 19 60 chr11 65814006 65814124 -82969348 - MER41D LTR ERV1 -10 547 426 2186 106 3 6 chr11 65814124 65814436 -82969036 + AluSx SINE Alu 1 311 -1 2916 157 19 60 chr11 65814436 65814885 -82968587 - MER41D LTR ERV1 -131 426 3 663 204 97 38 chr11 65815593 65815779 -82967693 - MIR SINE MIR -5 257 61 215 331 113 14 chr11 65815805 65815947 -82967525 + L2 LINE L2 3117 3272 0 1717 160 22 22 chr11 65815953 65816265 -82967207 + AluJo SINE Alu 1 312 0 323 320 113 11 chr11 65816267 65816576 -82966896 + L1MC4a LINE L1 880 3200 -1206 507 306 60 104 chr11 65816760 65817145 -82966327 - HAL1 LINE L1 -1321 1186 819 200 373 119 15 chr11 65818280 65818414 -82965058 - L2 LINE L2 -2 3270 3123 574 213 161 7 chr11 65818497 65818652 -82964820 - MER5A DNA MER1_type -7 182 4 1830 104 12 0 chr11 65819547 65819797 -82963675 - AluSx SINE Alu -56 256 4 195 259 19 0 chr11 65819990 65820044 -82963428 + L2 LINE L2 2922 2976 -338 223 314 14 0 chr11 65820217 65820287 -82963185 + L2 LINE L2 3233 3303 -10 181 261 22 0 chr11 65820379 65820425 -82963047 + MIR SINE MIR 77 123 -85 775 261 46 15 chr11 65820574 65820876 -82962596 - LTR16C LTR ERVL -4 487 107 28 48 0 0 chr11 65821259 65821301 -82962171 + AT_rich Low_complexity Low_complexity 1 42 0 251 288 0 0 chr11 65821363 65821443 -82962029 - L1M4 LINE L1 -2263 3883 3804 511 106 0 0 chr11 65821532 65821598 -82961874 + AluS SINE Alu 2 67 -246 364 284 7 14 chr11 65821633 65821774 -82961698 + L1MC4a LINE L1 3816 3955 -2191 1319 134 0 0 chr11 65821937 65822124 -82961348 + AluJo SINE Alu 1 187 -125 263 139 0 4 chr11 65822127 65822171 -82961301 - FLAM_A SINE Alu -86 46 10 779 145 16 0 chr11 65822183 65822307 -82961165 + FRAM SINE Alu 1 40 0 859 301 106 10 chr11 65822308 65822724 -82960748 + L1MC4a LINE L1 5254 5709 -2099 22 0 0 0 chr11 65822724 65822746 -82960726 + AT_rich Low_complexity Low_complexity 1 22 0 4801 123 8 13 chr11 65822746 65823118 -82960354 - L1PA14 LINE L1 -3 6158 5786 2507 46 0 3 chr11 65823118 65823424 -82960048 - AluY SINE Alu -6 305 1 4801 123 8 13 chr11 65823424 65823832 -82959640 - L1PA14 LINE L1 -375 5786 5382 256 319 0 59 chr11 65823840 65823868 -82959604 + L1MC4a LINE L1 5706 5734 -387 1958 132 23 0 chr11 65823868 65824172 -82959300 + AluSx SINE Alu 1 311 -1 256 319 0 59 chr11 65824172 65824262 -82959210 + L1MC4a LINE L1 5734 5817 -304 232 275 92 15 chr11 65824323 65824454 -82959018 + L1MC4a LINE L1 5913 6053 -1755 957 168 0 0 chr11 65825559 65825738 -82957734 + (TGG)n Simple_repeat Simple_repeat 1 179 0 659 182 20 0 chr11 65825711 65825859 -82957613 + (ATGGTG)n Simple_repeat Simple_repeat 3 153 0 * 184 350 0 0 chr11 65825920 65825980 -82957492 - MIR SINE MIR -62 146 87 209 292 143 36 chr11 65826533 65826701 -82956771 + MER5A DNA MER1_type 1 186 -3 315 336 54 7 chr11 65827372 65827521 -82955951 + MIR SINE MIR 85 240 -22 1512 131 56 8 chr11 65829298 65829565 -82953907 - MER31A LTR ERV1 -205 280 1 492 301 20 0 chr11 65829773 65829926 -82953546 - MIR SINE MIR -80 182 27 197 321 182 6 chr11 65829993 65830158 -82953314 - L2 LINE L2 -245 3068 2875 1682 194 0 16 chr11 65830215 65830394 -82953078 - AluJo SINE Alu 0 312 139 2241 100 0 0 chr11 65830394 65830693 -82952779 - AluSx SINE Alu -13 299 1 1682 194 0 16 chr11 65830693 65830828 -82952644 - AluJo SINE Alu -173 139 3 313 277 146 0 chr11 65830870 65831000 -82952472 - L2 LINE L2 -565 2749 2601 229 241 37 28 chr11 65832507 65832615 -82950857 + L2 LINE L2 1990 2098 -1216 241 247 62 118 chr11 65833442 65833620 -82949852 + MIR SINE MIR 26 193 -69 598 266 38 6 chr11 65833883 65834041 -82949431 - MIR SINE MIR -75 187 25 1549 144 93 4 chr11 65834041 65834198 -82949274 - AluJo SINE Alu -9 303 162 441 0 0 0 chr11 65834198 65834247 -82949225 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 1549 144 93 4 chr11 65834247 65834367 -82949105 - AluJo SINE Alu -150 162 1 379 257 0 73 chr11 65835269 65835405 -82948067 + Charlie8 DNA MER1_type 57 182 -2235 315 283 11 11 chr11 65835677 65835769 -82947703 - L2 LINE L2 -51 3262 3171 556 286 148 10 chr11 65835825 65836028 -82947444 - MIR SINE MIR -30 232 2 234 0 0 0 chr11 65836206 65836232 -82947240 + (A)n Simple_repeat Simple_repeat 1 26 0 2052 98 17 10 chr11 65836232 65836527 -82946945 + AluSc SINE Alu 1 297 -12 479 232 3 16 chr11 65837113 65837430 -82946042 + (CCA)n Simple_repeat Simple_repeat 1 312 0 190 200 46 31 chr11 65838363 65838428 -82945044 - MIR SINE MIR -117 145 80 658 135 12 14 chr11 65838604 65838855 -82944617 + AluJo SINE Alu 1 300 -12 25 0 0 0 chr11 65839070 65839095 -82944377 + AT_rich Low_complexity Low_complexity 1 25 0 320 249 194 30 chr11 65841739 65841904 -82941568 - MIR3 SINE MIR -10 198 7 339 298 88 0 chr11 65842565 65842679 -82940793 - MIR SINE MIR -68 194 71 273 258 215 0 chr11 65842692 65842785 -82940687 + MIR SINE MIR 2 114 -148 299 322 55 33 chr11 65842834 65842988 -82940484 + L1M4 LINE L1 3499 3657 -2489 320 302 13 82 chr11 65842988 65843147 -82940325 + MIR SINE MIR 114 261 -1 379 289 102 13 chr11 65843221 65843372 -82940100 - MIR SINE MIR -45 217 58 269 235 137 10 chr11 65843379 65843481 -82939991 - L2 LINE L2 -1 3312 3198 219 323 0 0 chr11 65844009 65844074 -82939398 + MIR SINE MIR 127 191 -71 451 317 7 7 chr11 65844109 65844254 -82939218 + MER91A DNA MER1_type 2 146 -50 1550 277 50 20 chr11 65844254 65844756 -82938716 - LTR53 LTR ERVL 0 519 3 184 291 265 0 chr11 65845092 65845322 -82938150 + L2 LINE L2 2462 2752 -562 6490 223 84 68 chr11 65845389 65845875 -82937597 + L1ME LINE L1 2748 3225 -2941 2231 119 0 0 chr11 65845875 65846186 -82937286 + AluSx SINE Alu 1 311 -1 6490 223 84 68 chr11 65846186 65846731 -82936741 + L1ME LINE L1 3225 3760 -2406 216 0 0 0 chr11 65846731 65846755 -82936717 + (GA)n Simple_repeat Simple_repeat 2 25 0 6490 223 84 68 chr11 65846755 65848362 -82935110 + L1ME LINE L1 3760 5433 -733 1918 110 9 35 chr11 65848366 65848683 -82934789 + AluSx SINE Alu 1 309 -3 437 280 47 20 chr11 65849035 65849185 -82934287 - L2 LINE L2 -2031 1283 1130 395 196 124 78 chr11 65849224 65849377 -82934095 + L1MD3 LINE L1 7432 7591 -404 1056 155 0 3 chr11 65849816 65850212 -82933260 + (TGGA)n Simple_repeat Simple_repeat 1 394 0 405 269 0 0 chr11 65850272 65850391 -82933081 + L1M4 LINE L1 3497 3615 -2531 2066 89 58 3 chr11 65851444 65851737 -82931735 + AluY SINE Alu 1 309 -2 316 319 0 9 chr11 65851889 65852002 -82931470 + (TG)n Simple_repeat Simple_repeat 2 113 0 2200 74 3 10 chr11 65852377 65852673 -82930799 - AluSp SINE Alu 0 313 20 935 273 40 8 chr11 65852823 65853076 -82930396 - MIR SINE MIR 0 262 2 348 208 0 0 chr11 65854476 65854572 -82928900 + (CACCAT)n Simple_repeat Simple_repeat 3 98 0 616 194 6 6 chr11 65854603 65854783 -82928689 + (CACCAT)n Simple_repeat Simple_repeat 1 180 0 375 239 0 0 chr11 65854809 65854939 -82928533 + (CACCAT)n Simple_repeat Simple_repeat 4 133 0 600 210 0 0 chr11 65854944 65855111 -82928361 + (CCA)n Simple_repeat Simple_repeat 1 167 0 433 243 6 6 chr11 65855141 65855318 -82928154 + (CACCAT)n Simple_repeat Simple_repeat 1 177 0 185 231 0 0 chr11 65855666 65855705 -82927767 - MIR SINE MIR -112 150 112 1978 117 48 0 chr11 65857663 65857953 -82925519 + AluSx SINE Alu 1 304 -8 636 272 66 33 chr11 65857973 65858216 -82925256 + MLT1J1 LTR MaLR 195 445 -1 1611 302 142 22 chr11 65858217 65858452 -82925020 + L2 LINE L2 1737 1943 -1370 2265 99 0 3 chr11 65858452 65858756 -82924716 - AluSq SINE Alu -10 303 1 1611 302 142 22 chr11 65858756 65859904 -82923568 + L2 LINE L2 1943 3303 -10 2189 112 0 3 chr11 65859922 65860234 -82923238 - AluSx SINE Alu -1 311 1 330 322 7 62 chr11 65860238 65860384 -82923088 + HAL1 LINE L1 961 1098 -1409 1972 137 0 10 chr11 65860398 65860697 -82922775 + AluSx SINE Alu 1 296 -16 1792 246 254 18 chr11 65860698 65861579 -82921893 - L2 LINE L2 -911 2403 1315 250 289 32 0 chr11 65861657 65861818 -82921654 + L1MDa LINE L1 2416 2585 -3955 428 275 88 35 chr11 65861870 65862041 -82921431 + L1ME4a LINE L1 5942 6121 0 415 107 0 0 chr11 65862219 65862275 -82921197 + AluS SINE Alu 29 84 -229 371 316 0 0 chr11 65862688 65862783 -82920689 + (CA)n Simple_repeat Simple_repeat 1 95 0 2119 123 0 13 chr11 65862789 65863105 -82920367 - AluSx SINE Alu 0 312 1 230 280 11 21 chr11 65866897 65866990 -82916482 + CT-rich Low_complexity Low_complexity 1 92 0 343 98 0 0 chr11 65867300 65867351 -82916121 + L2 LINE L2 3263 3313 0 339 85 0 0 chr11 65867368 65867415 -82916057 + (TAGG)n Simple_repeat Simple_repeat 1 47 0 1199 93 0 19 chr11 65867451 65867923 -82915549 + (TGGA)n Simple_repeat Simple_repeat 1 462 0 1296 70 0 31 chr11 65868429 65868843 -82914629 + (TGGA)n Simple_repeat Simple_repeat 1 401 0 236 98 0 24 chr11 65868856 65868897 -82914575 + (TGGA)n Simple_repeat Simple_repeat 1 40 0 204 67 0 0 chr11 65869341 65869371 -82914101 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 315 239 141 0 chr11 65869371 65869463 -82914009 - L2 LINE L2 -13 3259 3155 217 202 61 40 chr11 65869543 65869642 -82913830 + L2 LINE L2 1806 1906 -1408 190 307 172 31 chr11 65869683 65870032 -82913440 + L2 LINE L2 2164 2561 -753 704 258 105 36 chr11 65871592 65871977 -82911495 - LTR33A LTR ERVL -92 431 44 267 175 10 82 chr11 65872002 65872099 -82911373 + C-rich Low_complexity Low_complexity 3 92 0 294 280 42 8 chr11 65873435 65873553 -82909919 - MIR SINE MIR -55 153 32 531 332 75 0 chr11 65874919 65875118 -82908354 - MIR SINE MIR -21 241 28 196 371 84 7 chr11 65879805 65879948 -82903524 - L2 LINE L2 -4 3268 3115 749 120 26 0 chr11 65880045 65880162 -82903310 + MLT2B2 LTR ERVL 388 507 -8 1892 122 7 17 chr11 65880518 65880812 -82902660 + AluSq SINE Alu 1 291 -22 237 301 96 44 chr11 65881579 65881808 -82901664 - L2 LINE L2 -1473 1841 1601 3558 127 6 0 chr11 65881823 65882365 -82901107 + MER41B LTR ERV1 3 547 -88 1237 189 82 106 chr11 65882365 65882826 -82900646 + LTR7 LTR ERV1 1 450 0 484 218 0 0 chr11 65882827 65882914 -82900558 + MER41B LTR ERV1 549 635 0 365 288 103 45 chr11 65883017 65883260 -82900212 + MER20B DNA MER1_type 38 294 -489 1986 142 3 10 chr11 65883265 65883568 -82899904 - AluJo SINE Alu 0 312 12 727 212 0 0 chr11 65883577 65883709 -82899763 - AluJo SINE Alu -176 136 5 478 297 16 0 chr11 65883849 65883977 -82899495 - MER20B DNA MER1_type -344 439 310 3180 219 58 45 chr11 65884472 65884974 -82898498 + L1ME2 LINE L1 4270 4764 -1420 2236 96 7 0 chr11 65884974 65885276 -82898196 + AluSx SINE Alu 1 304 -8 3180 219 58 45 chr11 65885276 65885931 -82897541 + L1ME2 LINE L1 4764 5409 -775 1616 180 28 0 chr11 65885931 65886220 -82897252 + AluJo SINE Alu 1 297 -15 3180 219 58 45 chr11 65886220 65886771 -82896701 + L1ME2 LINE L1 5409 6180 -4 2064 145 3 0 chr11 65886994 65887304 -82896168 + AluSp SINE Alu 1 311 -2 1581 189 7 113 chr11 65887341 65887749 -82895723 + MLT1A1 LTR MaLR 1 365 0 515 209 63 89 chr11 65888139 65888285 -82895187 + LTR16A1 LTR ERVL 272 413 -44 2053 134 0 0 chr11 65888285 65888584 -82894888 + AluSx SINE Alu 1 299 -13 515 209 63 89 chr11 65888584 65888628 -82894844 + LTR16A1 LTR ERVL 413 457 0 269 254 16 0 chr11 65889139 65889202 -82894270 - MIR SINE MIR 0 262 199 1594 129 122 4 chr11 65890080 65890351 -82893121 - AluJo SINE Alu -9 303 1 1575 114 4 13 chr11 65890442 65890678 -82892794 - AluSc SINE Alu -75 234 1 1153 237 78 82 chr11 65890711 65891175 -82892297 + MLT1C LTR MaLR 6 467 0 2272 99 0 3 chr11 65892648 65892952 -82890520 - AluSx SINE Alu -9 303 1 1030 165 15 15 chr11 65892982 65893182 -82890290 + MLT1B LTR MaLR 1 200 -190 511 196 113 84 chr11 65893211 65893691 -82889781 - MER66B LTR ERV1 0 478 97 988 181 11 0 chr11 65893692 65893869 -82889603 + MLT1B LTR MaLR 212 390 0 2231 104 13 0 chr11 65894214 65894523 -82888949 + AluSp SINE Alu 1 313 0 485 264 102 37 chr11 65894528 65894823 -82888649 + L1ME4a LINE L1 5593 5906 -215 23 0 0 0 chr11 65894994 65895017 -82888455 + AT_rich Low_complexity Low_complexity 1 23 0 451 290 47 31 chr11 65895129 65895322 -82888150 + L1ME LINE L1 5467 5662 -459 207 214 0 0 chr11 65895677 65895719 -82887753 + A-rich Low_complexity Low_complexity 1 42 0 436 277 27 7 chr11 65895788 65895936 -82887536 + HAL1b LINE L1 1198 1348 0 2033 177 124 7 chr11 65896694 65897112 -82886360 - MLT1C LTR MaLR 0 467 1 1659 185 31 0 chr11 65897640 65897926 -82885546 + AluJb SINE Alu 1 295 -17 769 216 6 6 chr11 65897996 65898163 -82885309 + ERVL LTR ERVL 3750 3916 -1848 291 28 0 0 chr11 65898175 65898211 -82885261 + (TTG)n Simple_repeat Simple_repeat 2 37 0 2048 107 0 0 chr11 65898215 65898487 -82884985 - AluSc SINE Alu -37 272 1 2612 236 81 40 chr11 65898508 65898985 -82884487 - MER21B LTR ERV1 -61 802 281 1773 148 48 0 chr11 65898985 65899276 -82884196 - AluSx SINE Alu -7 305 1 2612 236 81 40 chr11 65899276 65899552 -82883920 - MER21B LTR ERV1 -582 281 18 1274 134 9 43 chr11 65899627 65899859 -82883613 + AluJb SINE Alu 87 310 -2 2144 106 3 3 chr11 65899919 65900221 -82883251 + AluSp SINE Alu 1 302 -11 564 278 134 17 chr11 65900318 65900609 -82882863 - MLT1J LTR MaLR -177 334 10 376 329 56 50 chr11 65900616 65901046 -82882426 + L1M4 LINE L1 2311 2750 -3396 2118 128 0 3 chr11 65901046 65901359 -82882113 + AluSx SINE Alu 1 312 0 376 329 56 50 chr11 65901359 65901755 -82881717 + L1M4 LINE L1 2750 3142 -3004 2275 97 7 0 chr11 65901756 65902064 -82881408 + AluSx SINE Alu 1 310 -2 1213 298 58 33 chr11 65902625 65903171 -82880301 + L1M4 LINE L1 3183 3714 -2432 1876 148 13 3 chr11 65903171 65903476 -82879996 + AluJb SINE Alu 1 308 -4 1213 298 58 33 chr11 65903476 65903710 -82879762 + L1M4 LINE L1 3714 3941 -2205 2437 177 24 56 chr11 65903710 65903977 -82879495 + MER66B LTR ERV1 1 275 -211 1993 109 50 0 chr11 65903977 65904260 -82879212 + AluSx SINE Alu 1 297 -15 2437 177 24 56 chr11 65904260 65904283 -82879189 + MER66B LTR ERV1 275 297 -189 261 0 0 0 chr11 65904283 65904312 -82879160 + (CCCTG)n Simple_repeat Simple_repeat 1 29 0 2437 177 24 56 chr11 65904312 65904522 -82878950 + MER66B LTR ERV1 297 486 0 1213 298 58 33 chr11 65904522 65904661 -82878811 + L1M4 LINE L1 3941 4316 -1830 202 226 19 0 chr11 65904860 65904913 -82878559 + A-rich Low_complexity Low_complexity 2 55 0 423 242 0 0 chr11 65906063 65906158 -82877314 + MIR3 SINE MIR 62 156 -52 411 298 94 47 chr11 65908405 65908576 -82874896 - MER91A DNA MER1_type -17 179 1 326 276 61 0 chr11 65908932 65909030 -82874442 + MLT1J2 LTR MaLR 23 126 -324 488 271 69 29 chr11 65909087 65909289 -82874183 + MLT1J2 LTR MaLR 243 450 0 910 275 126 15 chr11 65910542 65910931 -82872541 + MLT1J2 LTR MaLR 11 442 -8 393 22 0 0 chr11 65911358 65911404 -82872068 + (TG)n Simple_repeat Simple_repeat 2 47 0 216 355 0 0 chr11 65911435 65911528 -82871944 + (TG)n Simple_repeat Simple_repeat 2 94 0 222 37 0 0 chr11 65912690 65912717 -82870755 + (TG)n Simple_repeat Simple_repeat 1 27 0 212 239 0 0 chr11 65918324 65918370 -82865102 + (TGG)n Simple_repeat Simple_repeat 3 48 0 303 306 14 34 chr11 65918612 65918759 -82864713 + GA-rich Low_complexity Low_complexity 3 146 0 475 240 39 7 chr11 65920130 65920284 -82863188 + MER103 DNA DNA 8 166 0 264 152 22 0 chr11 65920345 65920391 -82863081 - L2 LINE L2 -4 3309 3263 325 266 65 58 chr11 65920419 65920573 -82862899 - MIR SINE MIR -36 226 72 198 0 0 0 chr11 65921957 65921979 -82861493 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 200 245 0 19 chr11 65922297 65922350 -82861122 + A-rich Low_complexity Low_complexity 2 53 0 622 278 128 4 chr11 65923662 65923889 -82859583 - MIR SINE MIR 0 262 8 21 82 0 0 chr11 65925881 65925930 -82857542 + GC_rich Low_complexity Low_complexity 1 49 0 194 156 22 44 chr11 65926369 65926414 -82857058 - L2 LINE L2 -8 3305 3262 500 333 56 5 chr11 65927028 65927226 -82856246 - MIR SINE MIR -34 228 21 276 219 0 31 chr11 65927783 65927847 -82855625 + (CATG)n Simple_repeat Simple_repeat 1 62 0 491 269 63 0 chr11 65928879 65929054 -82854418 - MIR SINE MIR -48 214 26 232 366 0 0 chr11 65931631 65931724 -82851748 + G-rich Low_complexity Low_complexity 1 93 0 212 296 0 0 chr11 65931766 65931820 -82851652 + C-rich Low_complexity Low_complexity 3 56 0 216 0 0 0 chr11 65931925 65931949 -82851523 + (TGGGGG)n Simple_repeat Simple_repeat 1 24 0 340 339 95 51 chr11 65936140 65936571 -82846901 + L1M4c LINE L1 853 1302 -5082 270 81 0 0 chr11 65936753 65936790 -82846682 + (GGATG)n Simple_repeat Simple_repeat 5 41 0 246 128 0 0 chr11 65938197 65938236 -82845236 + (CAG)n Simple_repeat Simple_repeat 1 39 0 222 254 0 0 chr11 65938237 65938300 -82845172 + G-rich Low_complexity Low_complexity 2 64 0 200 308 0 22 chr11 65938623 65938714 -82844758 + G-rich Low_complexity Low_complexity 6 94 0 288 313 0 47 chr11 65938853 65939003 -82844469 + G-rich Low_complexity Low_complexity 5 147 0 425 127 13 0 chr11 65939056 65939135 -82844337 + GA-rich Low_complexity Low_complexity 3 82 0 325 288 17 40 chr11 65939999 65940176 -82843296 + G-rich Low_complexity Low_complexity 5 177 0 358 256 56 32 chr11 65941859 65941984 -82841488 + MIR3 SINE MIR 14 141 -67 396 88 0 0 chr11 65942566 65942623 -82840849 + (TG)n Simple_repeat Simple_repeat 2 58 0 185 228 53 35 chr11 65945022 65945079 -82838393 + MIR3 SINE MIR 140 197 -11 264 250 75 0 chr11 65947774 65947854 -82835618 + MER91C DNA MER1_type 36 121 -19 186 321 55 37 chr11 65949784 65949893 -82833579 - MIR SINE MIR -69 139 29 468 279 20 41 chr11 65950138 65950285 -82833187 + MIR3 SINE MIR 7 150 -58 200 313 15 30 chr11 65950634 65950765 -82832707 + GA-rich Low_complexity Low_complexity 6 134 0 180 281 203 55 chr11 65951696 65951952 -82831520 + L3 LINE CR1 1279 1572 -5 294 313 82 67 chr11 65952866 65953061 -82830411 - MIR SINE MIR -45 217 20 2247 82 0 0 chr11 65954103 65954397 -82829075 + AluSg1 SINE Alu 1 294 -15 320 262 126 0 chr11 65954620 65954723 -82828749 + L2 LINE L2 3197 3312 -1 299 297 89 99 chr11 65954930 65955132 -82828340 + MIR SINE MIR 20 219 -43 259 267 23 35 chr11 65955245 65955331 -82828141 + L2 LINE L2 3187 3271 -1 581 298 51 17 chr11 65956954 65957189 -82826283 - MIR SINE MIR -7 255 13 2137 126 0 16 chr11 65957329 65957646 -82825826 + AluSx SINE Alu 1 312 0 242 114 0 23 chr11 65957649 65957693 -82825779 + (GGA)n Simple_repeat Simple_repeat 2 44 0 2434 71 0 3 chr11 65957858 65958168 -82825304 + AluY SINE Alu 1 309 -2 245 114 45 0 chr11 65958180 65958224 -82825248 + MER31A LTR ERV1 353 398 -87 2148 95 10 26 chr11 65958446 65958750 -82824722 + AluSq SINE Alu 1 299 -14 2274 156 11 47 chr11 65959141 65959553 -82823919 + L1MB3 LINE L1 5735 6131 -52 2101 116 3 7 chr11 65959553 65959854 -82823618 + AluSq SINE Alu 1 300 -13 2274 156 11 47 chr11 65959854 65959890 -82823582 + L1MB3 LINE L1 6131 6167 -16 2360 69 0 0 chr11 65960068 65960359 -82823113 + AluSg SINE Alu 1 291 -19 2460 69 0 0 chr11 65960359 65960663 -82822809 + AluSc SINE Alu 1 304 -5 330 343 39 58 chr11 65961356 65961563 -82821909 + L2 LINE L2 3110 3312 -1 2254 88 14 0 chr11 65961563 65961860 -82821612 - AluSx SINE Alu -11 301 1 2288 88 0 0 chr11 65961927 65962221 -82821251 - AluY SINE Alu -17 294 1 258 311 246 11 chr11 65962244 65962427 -82821045 - MIR SINE MIR -17 245 20 466 307 69 0 chr11 65963377 65963566 -82819906 - MIR SINE MIR -56 206 5 225 314 64 50 chr11 65965925 65966065 -82817407 + L2 LINE L2 3111 3252 -20 307 211 56 14 chr11 65968444 65968515 -82814957 + MIR SINE MIR 77 150 -112 189 0 0 0 chr11 65969079 65969100 -82814372 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1949 129 7 3 chr11 65969119 65969414 -82814058 + AluSx SINE Alu 5 300 -12 520 209 22 0 chr11 65969426 65969517 -82813955 - FLAM_A SINE Alu -32 110 18 2120 120 0 3 chr11 65969536 65969837 -82813635 - AluSq SINE Alu 0 313 14 259 259 0 130 chr11 65970189 65970297 -82813175 - MIR SINE MIR -50 212 119 204 267 13 0 chr11 65971264 65971339 -82812133 + (CA)n Simple_repeat Simple_repeat 2 77 0 226 190 17 17 chr11 65972438 65972496 -82810976 + A-rich Low_complexity Low_complexity 2 59 0 233 258 0 15 chr11 65972656 65972722 -82810750 + C-rich Low_complexity Low_complexity 1 65 0 216 0 0 0 chr11 65973452 65973476 -82809996 + (TTTTTG)n Simple_repeat Simple_repeat 3 26 0 2449 61 0 0 chr11 65974714 65975009 -82808463 + AluY SINE Alu 1 295 -16 568 281 34 0 chr11 65975886 65976032 -82807440 + MIR SINE MIR 56 206 -56 2272 103 0 6 chr11 65976176 65976487 -82806985 + AluSx SINE Alu 4 312 0 243 228 63 38 chr11 65976808 65976887 -82806585 - L2 LINE L2 -188 3084 3004 512 264 162 0 chr11 65976909 65977076 -82806396 - MIR SINE MIR -33 229 36 2231 122 0 0 chr11 65978696 65979008 -82804464 + AluSx SINE Alu 1 312 0 200 279 88 0 chr11 65979398 65979466 -82804006 + L2 LINE L2 3138 3211 -61 216 171 0 0 chr11 65982130 65982165 -82801307 + (TG)n Simple_repeat Simple_repeat 2 36 0 343 294 52 24 chr11 65984312 65984469 -82799003 + MIR SINE MIR 20 181 -62 874 111 32 0 chr11 65984602 65984728 -82798744 - FLAM_C SINE Alu -3 130 1 439 305 43 30 chr11 65984841 65985005 -82798467 - L2 LINE L2 0 3272 3107 327 301 0 21 chr11 65987487 65987580 -82795892 + MIR SINE MIR 56 146 -62 329 159 0 14 chr11 65988246 65988315 -82795157 + GA-rich Low_complexity Low_complexity 1 68 0 210 143 0 0 chr11 65988653 65988688 -82794784 + (T)n Simple_repeat Simple_repeat 1 35 0 199 279 0 87 chr11 65988779 65988883 -82794589 - L2 LINE L2 -2802 512 418 201 74 0 0 chr11 65991078 65991105 -82792367 + (CA)n Simple_repeat Simple_repeat 2 28 0 352 257 9 28 chr11 65991398 65991507 -82791965 + CT-rich Low_complexity Low_complexity 4 110 0 420 97 0 0 chr11 65991861 65991923 -82791549 + (CA)n Simple_repeat Simple_repeat 2 63 0 370 323 24 0 chr11 65993387 65993511 -82789961 - MIR3 SINE MIR -47 161 35 510 241 42 15 chr11 65993766 65993910 -82789562 + MIR3 SINE MIR 57 205 -3 2179 82 62 0 chr11 65994779 65995070 -82788402 - AluSp SINE Alu -3 310 2 237 324 57 0 chr11 65995816 65995921 -82787551 - MIR SINE MIR -29 233 123 209 269 20 128 chr11 65995916 65996065 -82787407 + L2 LINE L2 2530 2662 -652 * 455 310 186 50 chr11 65996090 65996768 -82786704 + L2 LINE L2 2207 2976 -338 1760 160 7 3 chr11 65996827 65997114 -82786358 + AluJb SINE Alu 13 300 -12 6648 45 4 25 chr11 65997114 65998180 -82785292 + SVA Other Other 549 1386 0 930 169 85 0 chr11 65998186 65998363 -82785109 + AluJo SINE Alu 121 312 0 287 345 58 22 chr11 65998499 65998638 -82784834 + L2 LINE L2 3127 3270 -2 600 278 45 34 chr11 65998642 65998864 -82784608 - MIR SINE MIR 0 262 32 255 284 17 60 chr11 65999012 65999128 -82784344 + L2 LINE L2 2944 3054 -218 597 251 170 27 chr11 65999137 65999360 -82784112 - MIR SINE MIR -2 260 6 234 0 0 0 chr11 65999957 65999983 -82783489 + (CA)n Simple_repeat Simple_repeat 1 26 0 * 441 0 0 0 chr11 65999982 66000031 -82783441 + (GA)n Simple_repeat Simple_repeat 2 50 0 304 299 84 0 chr11 66000672 66000779 -82782693 + MIR SINE MIR 107 222 -40 370 318 171 18 chr11 66000903 66001296 -82782176 + L2 LINE L2 2141 2593 -721 559 24 81 8 chr11 66001423 66001546 -82781926 + (TA)n Simple_repeat Simple_repeat 1 132 0 2833 25 0 3 chr11 66001548 66001872 -82781600 - L1PA5 LINE L1 -13 6141 5819 185 163 82 20 chr11 66002267 66002316 -82781156 - MIR SINE MIR -70 192 141 761 107 0 0 chr11 66002316 66002419 -82781053 - AluSg/x SINE Alu -13 299 197 315 271 62 42 chr11 66002429 66002458 -82781014 - MIR SINE MIR -114 148 121 2166 64 22 51 chr11 66002458 66002769 -82780703 + AluY SINE Alu 1 302 -9 315 271 62 42 chr11 66002769 66002883 -82780589 - MIR SINE MIR -141 121 2 807 183 7 0 chr11 66002927 66003080 -82780392 - MIR SINE MIR -8 254 101 2266 86 3 17 chr11 66003175 66003477 -82779995 + AluSp SINE Alu 1 298 -15 198 278 31 52 chr11 66003486 66003583 -82779889 + L2 LINE L2 3173 3267 -5 2335 89 3 0 chr11 66004273 66004577 -82778895 + AluSx SINE Alu 1 305 -7 400 270 30 0 chr11 66005045 66005145 -82778327 - L2 LINE L2 -1 3312 3210 2294 116 0 0 chr11 66005260 66005571 -82777901 - AluSx SINE Alu -1 311 1 219 36 0 0 chr11 66005601 66005629 -82777843 + (CA)n Simple_repeat Simple_repeat 1 28 0 189 107 0 0 chr11 66009003 66009031 -82774441 + (CAG)n Simple_repeat Simple_repeat 1 28 0 36 0 0 0 chr11 66009068 66009104 -82774368 + GC_rich Low_complexity Low_complexity 1 36 0 28 29 0 0 chr11 66009246 66009281 -82774191 + GC_rich Low_complexity Low_complexity 1 35 0 324 223 8 74 chr11 66010315 66010436 -82773036 + GA-rich Low_complexity Low_complexity 1 113 0 407 302 106 26 chr11 66010541 66010730 -82772742 - MIR SINE MIR -31 231 28 1293 145 26 30 chr11 66113173 66113407 -82670065 - AluJo SINE Alu -79 233 1 2309 102 0 0 chr11 66113514 66113819 -82669653 + AluSx SINE Alu 1 305 -7 337 299 71 25 chr11 66114046 66114243 -82669229 - L1MC/D LINE L1 -1992 5816 5611 680 156 156 0 chr11 66114244 66114372 -82669100 - AluJb SINE Alu -11 301 154 280 81 0 129 chr11 66114596 66114630 -82668842 - MSTB2 LTR MaLR -16 441 417 1579 156 52 35 chr11 66114630 66114918 -82668554 - AluJo SINE Alu -19 293 1 280 81 0 129 chr11 66114918 66114945 -82668527 - MSTB2 LTR MaLR -40 417 388 2154 123 0 7 chr11 66114947 66115255 -82668217 + AluSx SINE Alu 1 306 -6 218 315 63 9 chr11 66115432 66115543 -82667929 + MIR SINE MIR 31 147 -61 245 349 12 0 chr11 66115969 66116052 -82667420 - MIR SINE MIR -85 123 40 384 250 12 89 chr11 66118082 66118250 -82665222 + MIR SINE MIR 108 262 0 326 269 7 103 chr11 66119090 66119235 -82664237 + MIR SINE MIR 35 165 -97 1088 130 155 5 chr11 66119341 66119541 -82663931 - AluSx SINE Alu -82 230 1 852 184 95 0 chr11 66119545 66119713 -82663759 - AluSg/x SINE Alu -7 303 120 1937 106 10 20 chr11 66119969 66120271 -82663201 + AluY SINE Alu 1 299 -12 1388 126 119 45 chr11 66120367 66120636 -82662836 + AluJo SINE Alu 3 291 -21 407 318 0 40 chr11 66120648 66120799 -82662673 - MIR SINE MIR -1 261 117 890 148 7 19 chr11 66120894 66121049 -82662423 + AluSg/x SINE Alu 157 309 0 2185 97 3 3 chr11 66121538 66121837 -82661635 - AluSg SINE Alu -11 299 1 231 36 0 0 chr11 66121853 66121881 -82661591 + (TA)n Simple_repeat Simple_repeat 1 28 0 1880 148 7 3 chr11 66121882 66122173 -82661299 - AluJb SINE Alu -20 292 1 1514 131 33 20 chr11 66122854 66123099 -82660373 + AluJb SINE Alu 1 248 -64 25 0 0 0 chr11 66123099 66123124 -82660348 + AT_rich Low_complexity Low_complexity 1 25 0 1989 134 3 10 chr11 66123124 66123429 -82660043 + AluJb SINE Alu 1 303 -9 2185 66 0 30 chr11 66123513 66123817 -82659655 + AluY SINE Alu 1 295 -16 852 189 31 6 chr11 66123894 66124053 -82659419 - FRAM SINE Alu -13 163 1 363 304 20 0 chr11 66124156 66124258 -82659214 + MIR SINE MIR 33 136 -72 1701 175 0 25 chr11 66125615 66125929 -82657543 + AluJo SINE Alu 1 306 -6 193 240 67 13 chr11 66126269 66126344 -82657128 + MIR SINE MIR 56 134 -74 356 290 257 11 chr11 66126657 66126929 -82656543 - L2 LINE L2 -43 3270 2932 870 135 0 57 chr11 66126938 66127079 -82656393 + FLAM_C SINE Alu 1 133 0 2300 91 7 0 chr11 66127658 66127966 -82655506 - AluSq SINE Alu -1 312 3 203 206 82 82 chr11 66128906 66128979 -82654493 + MIR3 SINE MIR 1 73 -135 1416 139 9 126 chr11 66134149 66134466 -82649006 + AluJo SINE Alu 13 292 -20 1971 148 0 0 chr11 66134585 66134889 -82648583 + AluSx SINE Alu 1 304 -8 189 125 50 25 chr11 66135024 66135064 -82648408 + MIR SINE MIR 41 81 -181 202 331 106 21 chr11 66135755 66135897 -82647575 - MIR SINE MIR -68 194 41 1796 188 0 0 chr11 66136980 66137289 -82646183 - AluSx SINE Alu -3 309 1 908 142 0 8 chr11 66137289 66137423 -82646049 - AluJo SINE Alu -177 135 3 213 235 59 0 chr11 66137425 66137476 -82645996 - MIR SINE MIR -55 153 100 232 256 171 31 chr11 66137490 66137619 -82645853 + MIR3 SINE MIR 15 161 -47 252 182 36 0 chr11 66137648 66137703 -82645769 - MIR SINE MIR -147 115 59 1314 157 0 9 chr11 66138135 66138352 -82645120 + AluJo SINE Alu 75 289 -23 709 138 26 17 chr11 66138352 66138468 -82645004 + AluSq/x SINE Alu 1 117 -195 213 39 0 0 chr11 66138471 66138497 -82644975 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1863 154 0 14 chr11 66138658 66138783 -82644689 + AluJb SINE Alu 10 135 -177 2138 119 0 0 chr11 66138783 66139076 -82644396 + AluSx SINE Alu 1 293 -19 1863 154 0 14 chr11 66139076 66139242 -82644230 + AluJb SINE Alu 135 297 -15 1655 158 45 14 chr11 66139252 66139543 -82643929 + AluJo SINE Alu 1 300 -12 21 36 0 0 chr11 66140290 66140318 -82643154 + GC_rich Low_complexity Low_complexity 1 28 0 233 255 10 29 chr11 66140373 66140475 -82642997 + G-rich Low_complexity Low_complexity 2 101 0 * 258 289 31 0 chr11 66140434 66140531 -82642941 + (CGGG)n Simple_repeat Simple_repeat 2 101 0 180 286 0 20 chr11 66143228 66143277 -82640195 - MIR SINE MIR -55 153 106 2143 111 3 16 chr11 66143647 66143962 -82639510 - AluSx SINE Alu -1 311 1 2008 109 0 7 chr11 66143972 66144246 -82639226 - AluSx SINE Alu -20 292 21 213 364 0 42 chr11 66144280 66144398 -82639074 - MIR SINE MIR -63 145 33 437 412 20 12 chr11 66145081 66145331 -82638141 - MIR SINE MIR -4 258 7 2223 70 7 3 chr11 66147370 66147655 -82635817 + AluSx SINE Alu 1 286 -26 325 333 111 18 chr11 66147785 66147956 -82635516 - MIR SINE MIR -64 198 12 201 129 0 0 chr11 66148397 66148428 -82635044 + (C)n Simple_repeat Simple_repeat 1 31 0 248 274 27 14 chr11 66148441 66148514 -82634958 + MIR SINE MIR 47 120 -88 237 85 34 51 chr11 66148706 66148765 -82634707 + (TGGG)n Simple_repeat Simple_repeat 2 59 0 222 311 54 0 chr11 66150377 66150451 -82633021 - MIR SINE MIR -73 135 58 215 280 19 141 chr11 66152933 66153301 -82630171 + L2 LINE L2 2830 3152 -120 2291 107 0 0 chr11 66153892 66154200 -82629272 - AluSx SINE Alu -4 308 1 468 318 27 0 chr11 66154531 66154679 -82628793 - MIR SINE MIR -32 230 79 1740 143 10 23 chr11 66155903 66156065 -82627407 - AluJb SINE Alu -16 296 138 2187 93 3 10 chr11 66156065 66156366 -82627106 - AluSg SINE Alu -11 299 1 1740 143 10 23 chr11 66156366 66156503 -82626969 - AluJb SINE Alu -174 138 1 201 171 0 0 chr11 66156818 66156853 -82626619 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 457 296 50 25 chr11 66156984 66157183 -82626289 + MIR SINE MIR 39 242 -20 470 287 153 25 chr11 66158819 66159021 -82624451 + MIR SINE MIR 13 240 -22 2039 137 3 7 chr11 66159043 66159349 -82624123 - AluSx SINE Alu -7 305 1 306 336 83 22 chr11 66159464 66159741 -82623731 + L2 LINE L2 2820 3113 -159 2170 113 17 0 chr11 66159916 66160218 -82623254 + AluSx SINE Alu 1 307 -5 1088 145 0 17 chr11 66160218 66160390 -82623082 + AluSg/x SINE Alu 134 302 -10 370 249 5 69 chr11 66161134 66161323 -82622149 + GA-rich Low_complexity Low_complexity 2 178 0 2635 42 0 0 chr11 66161751 66162061 -82621411 + AluY SINE Alu 2 311 0 713 259 197 60 chr11 66162203 66162539 -82620933 - LTR33 LTR ERVL -20 501 212 601 186 81 8 chr11 66162539 66162663 -82620809 + FLAM_C SINE Alu 1 133 0 2318 78 0 3 chr11 66162670 66162964 -82620508 + AluSq SINE Alu 6 298 -15 713 259 197 60 chr11 66162964 66163056 -82620416 - LTR33 LTR ERVL -314 207 5 348 240 256 0 chr11 66163353 66163474 -82619998 + MIR SINE MIR 15 166 -96 2093 93 40 0 chr11 66163479 66163757 -82619715 + AluSg SINE Alu 6 294 -16 949 181 0 0 chr11 66163777 66163943 -82619529 + FRAM SINE Alu 1 40 0 2371 70 0 0 chr11 66164235 66164533 -82618939 - AluY SINE Alu -13 298 1 364 251 81 62 chr11 66164540 66164580 -82618892 - L1MC4 LINE L1 -15 8027 7989 1988 125 7 0 chr11 66164580 66164880 -82618592 + AluSx SINE Alu 1 302 0 2141 108 3 20 chr11 66164890 66165195 -82618277 + AluSx SINE Alu 1 300 -12 2573 58 0 0 chr11 66165195 66165506 -82617966 + AluY SINE Alu 1 311 0 364 251 81 62 chr11 66165506 66165663 -82617809 - L1MC4 LINE L1 -60 7982 7813 920 131 15 0 chr11 66165667 66165804 -82617668 + AluJo SINE Alu 1 139 -173 237 119 0 0 chr11 66165806 66165848 -82617624 + MLT1C LTR MaLR 395 436 -31 697 185 0 0 chr11 66165875 66165983 -82617489 + FLAM_C SINE Alu 6 113 -30 1418 153 29 62 chr11 66165994 66166269 -82617203 - AluJo SINE Alu -43 269 4 2342 90 0 3 chr11 66166349 66166659 -82616813 + AluSc SINE Alu 1 309 0 23 0 0 0 chr11 66166679 66166702 -82616770 + AT_rich Low_complexity Low_complexity 1 23 0 1257 253 125 80 chr11 66166878 66167632 -82615840 + L2 LINE L2 21 808 -2506 790 204 64 49 chr11 66167635 66167776 -82615696 + MER33 DNA MER1_type 1 138 -2447 2211 109 0 6 chr11 66167776 66168089 -82615383 - AluSx SINE Alu 0 312 2 2262 89 0 0 chr11 66168094 66168386 -82615086 - AluY SINE Alu -19 292 1 790 204 64 49 chr11 66168386 66168477 -82614995 + MER33 DNA MER1_type 141 246 -2339 1650 164 25 41 chr11 66168477 66168794 -82614678 - AluJo SINE Alu 0 312 1 790 204 64 49 chr11 66168794 66168819 -82614653 + MER33 DNA MER1_type 246 269 -55 1207 98 18 0 chr11 66168820 66168983 -82614489 + AluSg/x SINE Alu 129 294 -16 226 242 32 0 chr11 66168983 66169045 -82614427 + MER33 DNA MER1_type 261 324 0 271 182 0 45 chr11 66169045 66169111 -82614361 + L2 LINE L2 802 864 -2450 1395 78 0 0 chr11 66169111 66169290 -82614182 - AluSg/x SINE Alu -5 307 129 273 151 94 0 chr11 66169290 66169343 -82614129 - AluS SINE Alu -245 58 1 711 234 30 5 chr11 66169343 66169540 -82613932 + L2 LINE L2 854 1055 -2259 2239 113 0 0 chr11 66169540 66169850 -82613622 + AluSx SINE Alu 1 310 -2 623 206 16 8 chr11 66169903 66170029 -82613443 - L2 LINE L2 -4 3309 3183 894 188 11 11 chr11 66170029 66170210 -82613262 + AluJb SINE Alu 118 298 -14 928 173 35 15 chr11 66170233 66170430 -82613042 + MER20 DNA MER1_type 2 202 -17 180 0 0 0 chr11 66170481 66170501 -82612971 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1983 136 13 3 chr11 66170516 66170824 -82612648 + AluSx SINE Alu 1 311 -1 192 252 95 75 chr11 66170825 66170972 -82612500 - L2 LINE L2 -196 3117 2968 492 253 306 22 chr11 66171007 66171327 -82612145 + L2 LINE L2 1454 1864 -1450 2479 80 0 0 chr11 66171334 66171646 -82611826 - AluSx SINE Alu 0 312 1 1410 180 63 37 chr11 66171650 66171950 -82611522 - AluJo SINE Alu -4 308 1 1917 114 7 4 chr11 66171972 66172280 -82611192 + AluSx SINE Alu 12 320 0 1145 169 18 59 chr11 66172357 66172496 -82610976 - L1MD3 LINE L1 -196 7799 7675 1699 164 17 0 chr11 66172496 66172789 -82610683 - AluJo SINE Alu -1 311 14 1145 169 18 59 chr11 66172789 66172922 -82610550 - L1MD3 LINE L1 -320 7675 7538 311 253 61 30 chr11 66172931 66173030 -82610442 + L2 LINE L2 3210 3311 -2 2141 108 0 13 chr11 66173094 66173399 -82610073 + AluSx SINE Alu 1 301 -11 1271 122 0 6 chr11 66173408 66173588 -82609884 + AluSq SINE Alu 1 179 -134 872 125 0 8 chr11 66173589 66173717 -82609755 - AluSg/x SINE Alu -22 290 164 348 232 14 3 chr11 66173740 66173828 -82609644 + L1MC4 LINE L1 1977 6985 -1337 1093 118 0 17 chr11 66173833 66174011 -82609461 + AluJb SINE Alu 125 299 -13 386 204 95 18 chr11 66175530 66175667 -82607805 - MIR SINE MIR -62 146 31 1852 125 10 14 chr11 66175826 66176122 -82607350 - AluJb SINE Alu -9 303 9 2222 72 0 33 chr11 66176141 66176446 -82607026 - AluY SINE Alu -16 295 1 333 291 60 8 chr11 66176495 66176629 -82606843 + MER117 DNA MER1_type 1 141 -56 312 274 46 50 chr11 66177545 66177744 -82605728 + MIR SINE MIR 9 215 -47 21 57 0 0 chr11 66181759 66181794 -82601678 + GC_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr11 66181819 66181844 -82601628 + GC_rich Low_complexity Low_complexity 1 25 0 195 69 0 0 chr11 66181880 66181909 -82601563 + (CCCCG)n Simple_repeat Simple_repeat 2 30 0 180 77 0 0 chr11 66181922 66181948 -82601524 + (CCCG)n Simple_repeat Simple_repeat 1 26 0 201 227 0 0 chr11 66182119 66182163 -82601309 + C-rich Low_complexity Low_complexity 6 49 0 186 217 87 0 chr11 66182363 66182409 -82601063 - MIR SINE MIR -97 165 116 265 318 45 0 chr11 66182759 66182869 -82600603 + MIR SINE MIR 35 149 -59 248 294 59 29 chr11 66183576 66183678 -82599794 + MIR SINE MIR 60 150 -58 358 275 96 72 chr11 66185211 66185378 -82598094 + MIR SINE MIR 58 228 -34 180 0 0 0 chr11 66186167 66186187 -82597285 + (TCTG)n Simple_repeat Simple_repeat 2 21 0 1052 103 0 0 chr11 66186373 66186509 -82596963 + AluSq/x SINE Alu 1 136 -177 1965 109 34 17 chr11 66186509 66186644 -82596828 + AluSq SINE Alu 1 132 -181 2171 102 3 3 chr11 66186644 66186948 -82596524 + AluSg SINE Alu 1 304 -6 1965 109 34 17 chr11 66186948 66187106 -82596366 + AluSq SINE Alu 132 299 -14 2365 71 0 0 chr11 66187114 66187410 -82596062 + AluY SINE Alu 12 307 -4 229 293 67 73 chr11 66188884 66189048 -82594424 + MIR SINE MIR 50 212 -50 207 313 60 0 chr11 66189093 66189160 -82594312 - L2 LINE L2 -9 3263 3193 1282 186 12 105 chr11 66189278 66189409 -82594063 + AluJo SINE Alu 1 143 -169 2152 82 6 32 chr11 66189409 66189724 -82593748 + AluSc SINE Alu 3 309 0 2234 110 0 0 chr11 66189727 66190027 -82593445 + AluSg SINE Alu 1 300 -10 1282 186 12 105 chr11 66190027 66190224 -82593248 + AluJo SINE Alu 145 302 -10 621 259 146 46 chr11 66190398 66190451 -82593021 - L2 LINE L2 -719 2595 2549 2288 90 7 0 chr11 66190451 66190761 -82592711 + AluSx SINE Alu 1 312 0 621 259 146 46 chr11 66190761 66191077 -82592395 - L2 LINE L2 -765 2549 2189 188 279 66 0 chr11 66191731 66191792 -82591680 + MIR SINE MIR 81 145 -63 2297 104 3 0 chr11 66191867 66192175 -82591297 - AluSp SINE Alu -3 310 2 687 305 21 0 chr11 66192276 66192466 -82591006 - MIR SINE MIR -19 243 50 378 264 129 16 chr11 66192500 66192627 -82590845 + MIR SINE MIR 37 173 -61 1813 153 37 0 chr11 66193440 66193740 -82589732 + AluJo SINE Alu 1 311 -1 376 297 25 52 chr11 66193909 66193945 -82589527 - MIR SINE MIR -33 229 194 2249 112 0 0 chr11 66193945 66194257 -82589215 - AluSx SINE Alu 0 312 1 376 297 25 52 chr11 66194257 66194442 -82589030 - MIR SINE MIR -68 194 15 232 313 88 14 chr11 66194401 66194548 -82588924 + MIR SINE MIR 33 190 -72 * 21 36 0 0 chr11 66197524 66197552 -82585920 + AT_rich Low_complexity Low_complexity 1 28 0 322 316 126 6 chr11 66197608 66197782 -82585690 - L1MC4a LINE L1 -1759 6049 5855 2429 65 0 3 chr11 66197782 66198088 -82585384 + AluSg SINE Alu 1 305 -5 568 292 15 49 chr11 66198202 66198466 -82585006 - L1MC4a LINE L1 -1988 5820 5566 300 308 59 77 chr11 66198996 66199217 -82584255 + L1ME3 LINE L1 5944 6160 -2 2117 141 0 0 chr11 66199226 66199532 -82583940 + AluJo SINE Alu 5 310 -2 1887 227 28 21 chr11 66199721 66200284 -82583188 - L1ME1 LINE L1 -4 6162 5596 2146 86 35 3 chr11 66200284 66200574 -82582898 - AluSx SINE Alu -13 299 1 1950 155 0 3 chr11 66200577 66200886 -82582586 - AluSx SINE Alu -4 308 1 1451 197 14 7 chr11 66200886 66201170 -82582302 - AluJb SINE Alu -16 296 11 2384 72 0 13 chr11 66201178 66201483 -82581989 - AluY SINE Alu -10 301 1 1887 132 16 22 chr11 66201483 66201794 -82581678 - AluJo SINE Alu -3 309 1 2300 102 0 0 chr11 66201901 66202205 -82581267 + AluSx SINE Alu 1 304 -8 337 299 71 25 chr11 66202431 66202628 -82580844 - L1MC/D LINE L1 -1992 5816 5611 680 156 156 0 chr11 66202629 66202757 -82580715 - AluJb SINE Alu -11 301 154 280 81 0 129 chr11 66202981 66203015 -82580457 - MSTB2 LTR MaLR -16 441 417 1594 153 52 35 chr11 66203015 66203303 -82580169 - AluJo SINE Alu -19 293 1 280 81 0 129 chr11 66203303 66203330 -82580142 - MSTB2 LTR MaLR -40 417 388 1495 81 5 5 chr11 66203332 66203529 -82579943 + AluSx SINE Alu 1 197 -115 628 47 153 0 chr11 66203529 66203614 -82579858 - AluS SINE Alu -212 100 3 364 62 0 0 chr11 66203615 66203663 -82579809 - MSTD LTR MaLR -342 54 7 * 1124 222 83 38 chr11 66203662 66203882 -82579590 - LTR24B LTR ERV1 -6 570 361 2041 141 3 0 chr11 66203882 66204188 -82579284 + AluSx SINE Alu 1 307 -5 1124 222 83 38 chr11 66204188 66204436 -82579036 - LTR24B LTR ERV1 -215 361 81 347 244 71 10 chr11 66204531 66204728 -82578744 - L1 LINE L1 -747 5399 5191 1873 110 4 4 chr11 66204979 66205251 -82578221 - AluSx SINE Alu -1 311 40 2107 101 14 0 chr11 66205351 66205647 -82577825 - AluSg SINE Alu -10 300 1 225 0 0 0 chr11 66205845 66205870 -82577602 + (T)n Simple_repeat Simple_repeat 1 25 0 36 0 0 0 chr11 66206514 66206550 -82576922 + GC_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr11 66206579 66206601 -82576871 + GC_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr11 66206853 66206878 -82576594 + GC_rich Low_complexity Low_complexity 1 25 0 422 191 12 12 chr11 66206920 66207088 -82576384 + (CCG)n Simple_repeat Simple_repeat 3 170 0 21 0 0 0 chr11 66207101 66207122 -82576350 + GC_rich Low_complexity Low_complexity 1 21 0 38 98 0 0 chr11 66207158 66207280 -82576192 + GC_rich Low_complexity Low_complexity 1 122 0 2257 89 0 10 chr11 66210134 66210437 -82573035 - AluSc SINE Alu -9 300 1 22 0 0 0 chr11 66212776 66212798 -82570674 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr11 66219302 66219330 -82564142 + AT_rich Low_complexity Low_complexity 1 28 0 2331 80 7 0 chr11 66222911 66223211 -82560261 - AluSx SINE Alu -10 302 1 2265 90 10 3 chr11 66223517 66223816 -82559656 + AluSq SINE Alu 1 301 -12 301 279 0 90 chr11 66224050 66224172 -82559300 - MIR SINE MIR -93 169 59 205 100 0 50 chr11 66224996 66225036 -82558436 + (TCCCC)n Simple_repeat Simple_repeat 4 41 0 250 261 29 14 chr11 66226041 66226110 -82557362 + MIR SINE MIR 58 127 -81 290 311 176 0 chr11 66226225 66226344 -82557128 - MIR SINE MIR -96 166 27 409 240 13 50 chr11 66227460 66227615 -82555857 - MIR SINE MIR -30 178 27 840 168 0 0 chr11 66227834 66227965 -82555507 + AluJo SINE Alu 3 133 -169 255 135 8 2 chr11 66227972 66228224 -82555248 + AluJo SINE Alu 6 301 -1 855 181 24 24 chr11 66228227 66228393 -82555079 + AluJo SINE Alu 137 302 0 2136 130 0 7 chr11 66228437 66228745 -82554727 + AluSx SINE Alu 1 306 -6 218 315 63 9 chr11 66228922 66229033 -82554439 + MIR SINE MIR 31 147 -61 245 349 12 0 chr11 66229459 66229542 -82553930 - MIR SINE MIR -85 123 40 397 293 207 12 chr11 66232161 66232325 -82551147 + MER91A DNA MER1_type 1 196 0 455 231 96 6 chr11 66232855 66233011 -82550461 + MER117 DNA MER1_type 1 170 -27 264 175 16 48 chr11 66233380 66233443 -82550029 - MIR SINE MIR -112 150 90 2426 86 0 6 chr11 66233998 66234313 -82549159 + AluSq SINE Alu 1 313 0 2425 67 0 0 chr11 66235099 66235397 -82548075 + AluY SINE Alu 2 299 -12 2338 60 0 0 chr11 66235512 66235830 -82547642 - AluY SINE Alu 0 318 1 2093 108 3 0 chr11 66235830 66236125 -82547347 - AluSx SINE Alu -16 296 1 2135 105 10 0 chr11 66236127 66236423 -82547049 - AluSx SINE Alu -13 299 1 864 238 64 11 chr11 66236475 66236756 -82546716 - L1ME4a LINE L1 -294 5827 5532 2263 89 3 10 chr11 66237130 66237434 -82546038 - AluSx SINE Alu -10 302 1 196 286 0 0 chr11 66237616 66237658 -82545814 + MIR SINE MIR 111 152 -110 212 250 132 13 chr11 66239260 66239336 -82544136 - MIR3 SINE MIR -16 192 108 25 51 0 0 chr11 66240140 66240179 -82543293 + GC_rich Low_complexity Low_complexity 1 39 0 377 219 13 52 chr11 66240272 66240427 -82543045 + G-rich Low_complexity Low_complexity 6 154 0 27 49 0 0 chr11 66240507 66240548 -82542924 + GC_rich Low_complexity Low_complexity 1 41 0 383 214 60 0 chr11 66240692 66240776 -82542696 - MIR SINE MIR -114 148 60 201 229 0 0 chr11 66243515 66243563 -82539909 + C-rich Low_complexity Low_complexity 1 48 0 202 328 0 16 chr11 66244324 66244385 -82539087 + L2 LINE L2 2707 2766 -548 762 209 31 6 chr11 66244694 66244857 -82538615 + L2 LINE L2 3104 3270 -2 189 267 0 0 chr11 66244903 66244948 -82538524 + L2 LINE L2 3211 3255 -17 392 352 56 11 chr11 66245855 66246034 -82537438 - MIR SINE MIR -52 210 24 1719 127 16 73 chr11 66246034 66246350 -82537122 - AluJo SINE Alu -14 298 1 409 247 41 132 chr11 66246392 66246453 -82537019 - L1ME3A LINE L1 0 6170 6105 2032 130 3 10 chr11 66246453 66246761 -82536711 + AluSx SINE Alu 1 306 -6 409 247 41 132 chr11 66246761 66247129 -82536343 - L1ME3A LINE L1 -65 6105 5783 1786 148 34 0 chr11 66247129 66247420 -82536052 - AluSx SINE Alu -11 301 1 409 247 41 132 chr11 66247420 66247475 -82535997 - L1ME3A LINE L1 -387 5783 5725 2170 100 0 34 chr11 66247482 66247802 -82535670 - AluSc SINE Alu 0 309 1 196 308 92 0 chr11 66249330 66249395 -82534077 - L3 LINE CR1 -3 1574 1504 278 250 14 28 chr11 66250111 66250183 -82533289 + MIR3 SINE MIR 95 165 -43 1819 158 0 16 chr11 66250737 66250861 -82532611 + AluJb SINE Alu 1 125 -187 2092 144 0 0 chr11 66250861 66251160 -82532312 - AluSx SINE Alu -13 299 1 1819 158 0 16 chr11 66251160 66251352 -82532120 + AluJb SINE Alu 125 312 0 723 276 57 54 chr11 66251566 66251747 -82531725 - L1MEd LINE L1 -5663 456 277 423 0 0 0 chr11 66251747 66251794 -82531678 + (TG)n Simple_repeat Simple_repeat 2 48 0 723 276 57 54 chr11 66251794 66252018 -82531454 - L1MEd LINE L1 -5842 277 50 2144 93 0 59 chr11 66252037 66252214 -82531258 - AluSx SINE Alu 0 302 151 2351 71 0 13 chr11 66252214 66252389 -82531083 - AluSq SINE Alu -6 307 136 2154 87 42 0 chr11 66252389 66252678 -82530794 - AluY SINE Alu -10 301 1 2351 71 0 13 chr11 66252678 66252813 -82530659 - AluSq SINE Alu -177 136 1 2144 93 0 59 chr11 66252813 66252956 -82530516 - AluSx SINE Alu -151 151 1 1555 283 68 19 chr11 66252999 66253807 -82529665 - L1MC4a LINE L1 -747 5399 5052 2155 114 0 10 chr11 66253807 66254115 -82529357 - AluSg SINE Alu -5 305 1 1555 283 68 19 chr11 66254115 66254128 -82529344 - L1MC4a LINE L1 -1094 5052 5041 664 246 63 19 chr11 66254262 66254469 -82529003 - MIR SINE MIR -25 237 22 242 223 170 21 chr11 66254783 66254877 -82528595 - MIR3 SINE MIR -97 111 4 183 42 0 0 chr11 66255465 66255489 -82527983 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2253 92 3 0 chr11 66255553 66255857 -82527615 + AluSx SINE Alu 1 305 -7 2562 41 0 19 chr11 66256458 66256773 -82526699 + AluY SINE Alu 1 309 -2 2232 97 0 13 chr11 66257374 66257682 -82525790 + AluSx SINE Alu 1 304 -8 268 300 89 11 chr11 66258552 66258642 -82524830 - L3 LINE CR1 -53 1524 1428 318 148 0 0 chr11 66259585 66259639 -82523833 + (TG)n Simple_repeat Simple_repeat 2 55 0 300 27 0 0 chr11 66260168 66260205 -82523267 + (TG)n Simple_repeat Simple_repeat 1 37 0 32 26 0 0 chr11 66262053 66262092 -82521380 + GC_rich Low_complexity Low_complexity 1 39 0 251 268 9 36 chr11 66262216 66262328 -82521144 + G-rich Low_complexity Low_complexity 2 110 0 251 228 18 0 chr11 66262621 66262678 -82520794 + GA-rich Low_complexity Low_complexity 2 59 0 234 196 0 22 chr11 66263511 66263557 -82519915 + GA-rich Low_complexity Low_complexity 2 46 0 308 225 62 0 chr11 66265049 66265129 -82518343 + MIR SINE MIR 108 192 -70 224 307 0 93 chr11 66265149 66265289 -82518183 - MIR SINE MIR 0 262 136 480 315 0 66 chr11 66265791 66265988 -82517484 + MIR SINE MIR 8 191 -71 883 226 119 13 chr11 66266051 66266286 -82517186 - MIR SINE MIR -2 260 1 766 271 10 71 chr11 66266457 66266752 -82516720 - L3 LINE CR1 -24 1553 1277 404 275 87 22 chr11 66267066 66267204 -82516268 + MIR3 SINE MIR 30 176 -32 276 301 78 16 chr11 66267328 66267487 -82515985 + MIR3 SINE MIR 64 230 -32 407 302 106 26 chr11 66269811 66270000 -82513472 + MIR SINE MIR 28 231 -31 324 286 3 63 chr11 66270061 66270227 -82513245 + CT-rich Low_complexity Low_complexity 1 270 0 28 29 0 0 chr11 66271262 66271297 -82512175 + GC_rich Low_complexity Low_complexity 1 35 0 38 0 0 0 chr11 66271439 66271477 -82511995 + GC_rich Low_complexity Low_complexity 1 38 0 189 107 0 0 chr11 66271514 66271542 -82511930 + (CTG)n Simple_repeat Simple_repeat 1 28 0 219 36 0 0 chr11 66274916 66274944 -82508528 + (TG)n Simple_repeat Simple_repeat 1 28 0 2307 113 0 0 chr11 66274974 66275285 -82508187 + AluSx SINE Alu 1 311 -1 400 270 30 0 chr11 66275400 66275500 -82507972 + L2 LINE L2 3210 3312 -1 2307 92 3 0 chr11 66275968 66276272 -82507200 - AluSx SINE Alu -7 305 1 198 278 31 52 chr11 66276962 66277059 -82506413 - L2 LINE L2 -5 3267 3173 2266 86 3 17 chr11 66277068 66277370 -82506102 - AluSp SINE Alu -15 298 1 807 183 7 0 chr11 66277465 66277618 -82505854 + MIR SINE MIR 101 254 -8 315 271 62 42 chr11 66277662 66277776 -82505696 + MIR SINE MIR 2 121 -141 2166 64 22 51 chr11 66277776 66278087 -82505385 - AluY SINE Alu -9 302 1 315 271 62 42 chr11 66278087 66278116 -82505356 + MIR SINE MIR 121 148 -114 755 108 0 0 chr11 66278126 66278228 -82505244 + AluSg/x SINE Alu 195 296 -14 185 163 82 20 chr11 66278228 66278277 -82505195 + MIR SINE MIR 141 192 -70 2361 141 5 10 chr11 66278606 66278996 -82504476 + L1PA7 LINE L1 5754 6141 -13 559 24 81 8 chr11 66278998 66279121 -82504351 + (TA)n Simple_repeat Simple_repeat 1 132 0 370 318 171 18 chr11 66279248 66279641 -82503831 - L2 LINE L2 -721 2593 2141 304 299 84 0 chr11 66279765 66279872 -82503600 - MIR SINE MIR -40 222 107 531 0 0 0 chr11 66280513 66280572 -82502900 + (TC)n Simple_repeat Simple_repeat 2 60 0 234 0 0 0 chr11 66280571 66280597 -82502875 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 597 251 170 27 chr11 66281194 66281417 -82502055 + MIR SINE MIR 6 260 -2 255 284 17 60 chr11 66281426 66281542 -82501930 - L2 LINE L2 -218 3054 2944 600 278 45 34 chr11 66281690 66281912 -82501560 + MIR SINE MIR 32 262 0 287 345 58 22 chr11 66281916 66282055 -82501417 - L2 LINE L2 -2 3270 3127 930 169 85 0 chr11 66282191 66282368 -82501104 - AluJo SINE Alu 0 312 121 6648 45 4 25 chr11 66282374 66283440 -82500032 - SVA Other Other -520 1386 549 1760 160 7 3 chr11 66283440 66283727 -82499745 - AluJb SINE Alu -12 300 13 455 310 186 50 chr11 66283786 66284464 -82499008 - L2 LINE L2 -338 2976 2207 209 269 20 128 chr11 66284489 66284638 -82498834 - L2 LINE L2 -652 2662 2530 * 237 324 57 0 chr11 66284633 66284738 -82498734 + MIR SINE MIR 123 233 -29 2202 82 61 0 chr11 66285484 66285778 -82497694 + AluSp SINE Alu 2 313 0 510 241 42 15 chr11 66286647 66286791 -82496681 - MIR3 SINE MIR -3 205 57 370 323 24 0 chr11 66287046 66287170 -82496302 + MIR3 SINE MIR 35 161 -47 456 91 0 0 chr11 66288634 66288700 -82494772 + (TG)n Simple_repeat Simple_repeat 2 67 0 352 257 9 28 chr11 66289054 66289163 -82494309 + GA-rich Low_complexity Low_complexity 4 110 0 201 74 0 0 chr11 66289456 66289483 -82493989 + (TG)n Simple_repeat Simple_repeat 2 28 0 199 279 0 87 chr11 66291678 66291782 -82491690 + L2 LINE L2 418 512 -2802 210 143 0 0 chr11 66291873 66291908 -82491564 + (A)n Simple_repeat Simple_repeat 1 35 0 329 159 0 14 chr11 66292246 66292315 -82491157 + CT-rich Low_complexity Low_complexity 1 68 0 327 301 0 21 chr11 66292981 66293074 -82490398 - MIR SINE MIR -62 146 56 439 305 43 30 chr11 66295556 66295720 -82487752 + L2 LINE L2 3107 3272 0 874 111 32 0 chr11 66295833 66295959 -82487513 + FLAM_C SINE Alu 1 130 -3 343 294 52 24 chr11 66296092 66296249 -82487223 - MIR SINE MIR -62 146 20 216 171 0 0 chr11 66298396 66298431 -82485041 + (CA)n Simple_repeat Simple_repeat 2 36 0 200 279 88 0 chr11 66301095 66301163 -82482309 - L2 LINE L2 -61 3211 3138 2247 119 0 0 chr11 66301553 66301865 -82481607 - AluSx SINE Alu 0 312 1 512 264 162 0 chr11 66303490 66303657 -82479815 + MIR SINE MIR 36 229 -33 243 228 63 38 chr11 66303679 66303758 -82479714 + L2 LINE L2 3004 3084 -188 2272 103 0 6 chr11 66304079 66304390 -82479082 - AluSx SINE Alu 0 312 4 568 281 34 0 chr11 66304534 66304680 -82478792 - MIR SINE MIR -56 206 56 2449 61 0 0 chr11 66305557 66305852 -82477620 - AluY SINE Alu -16 295 1 216 0 0 0 chr11 66307090 66307114 -82476358 + (CAAAAA)n Simple_repeat Simple_repeat 3 26 0 233 258 0 15 chr11 66307844 66307910 -82475562 + G-rich Low_complexity Low_complexity 1 65 0 228 190 17 17 chr11 66308070 66308128 -82475344 + T-rich Low_complexity Low_complexity 2 59 0 204 267 13 0 chr11 66309227 66309302 -82474170 + (TG)n Simple_repeat Simple_repeat 2 77 0 245 269 0 130 chr11 66310269 66310377 -82473095 + MIR SINE MIR 119 212 -50 2149 116 0 3 chr11 66310729 66311030 -82472442 + AluSq SINE Alu 14 313 0 520 209 22 0 chr11 66311049 66311140 -82472332 + FLAM_A SINE Alu 18 110 -32 1933 129 7 3 chr11 66311152 66311447 -82472025 - AluSx SINE Alu -12 300 5 189 0 0 0 chr11 66311466 66311487 -82471985 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 307 211 56 14 chr11 66312053 66312124 -82471348 - MIR SINE MIR -112 150 77 225 314 64 50 chr11 66314503 66314643 -82468829 - L2 LINE L2 -20 3252 3111 466 307 69 0 chr11 66317002 66317191 -82466281 + MIR SINE MIR 5 206 -56 258 311 246 11 chr11 66318141 66318324 -82465148 + MIR SINE MIR 20 245 -17 2288 88 0 0 chr11 66318347 66318641 -82464831 + AluY SINE Alu 1 294 -17 2254 88 14 0 chr11 66318708 66319005 -82464467 + AluSx SINE Alu 1 301 -11 330 343 39 58 chr11 66319005 66319212 -82464260 - L2 LINE L2 -1 3312 3110 2460 69 0 0 chr11 66319905 66320209 -82463263 - AluSc SINE Alu -5 304 1 2360 69 0 0 chr11 66320209 66320500 -82462972 - AluSg SINE Alu -19 291 1 2274 156 11 47 chr11 66320678 66320714 -82462758 - L1MB3 LINE L1 -16 6167 6131 2101 116 3 7 chr11 66320714 66321015 -82462457 - AluSq SINE Alu -13 300 1 2274 156 11 47 chr11 66321015 66321427 -82462045 - L1MB3 LINE L1 -52 6131 5735 2148 95 10 26 chr11 66321818 66322122 -82461350 - AluSq SINE Alu -14 299 1 245 114 45 0 chr11 66322344 66322388 -82461084 - MER31A LTR ERV1 -87 398 353 2434 71 0 3 chr11 66322400 66322710 -82460762 - AluY SINE Alu -2 309 1 242 114 0 23 chr11 66322875 66322919 -82460553 + (TCC)n Simple_repeat Simple_repeat 2 44 0 2131 126 0 19 chr11 66322922 66323240 -82460232 - AluSx SINE Alu 0 312 1 581 298 51 17 chr11 66323380 66323615 -82459857 + MIR SINE MIR 13 255 -7 259 267 23 35 chr11 66325238 66325324 -82458148 - L2 LINE L2 -1 3271 3187 299 297 89 99 chr11 66325437 66325639 -82457833 - MIR SINE MIR -43 219 20 320 262 126 0 chr11 66325846 66325949 -82457523 - L2 LINE L2 -1 3312 3197 2247 82 0 0 chr11 66326172 66326466 -82457006 - AluSg1 SINE Alu -15 294 1 294 313 82 67 chr11 66327508 66327703 -82455769 + MIR SINE MIR 20 217 -45 200 313 15 30 chr11 66329804 66329935 -82453537 + CT-rich Low_complexity Low_complexity 6 134 0 468 279 20 41 chr11 66330284 66330431 -82453041 - MIR3 SINE MIR -58 150 7 186 321 55 37 chr11 66330676 66330785 -82452687 + MIR SINE MIR 29 139 -69 264 250 75 0 chr11 66332715 66332795 -82450677 - MER91C DNA MER1_type -19 121 36 185 228 53 35 chr11 66335490 66335547 -82447925 - MIR3 SINE MIR -11 197 140 378 91 0 0 chr11 66337946 66338001 -82445471 + (CA)n Simple_repeat Simple_repeat 2 56 0 358 256 56 32 chr11 66338584 66338709 -82444763 - MIR3 SINE MIR -67 141 14 674 213 0 0 chr11 66339927 66340049 -82443423 - FLAM_C SINE Alu -21 122 1 1917 114 7 4 chr11 66340071 66340379 -82443093 + AluSx SINE Alu 12 320 0 1145 169 18 59 chr11 66340456 66340595 -82442877 - L1MD3 LINE L1 -196 7799 7675 1699 164 17 0 chr11 66340595 66340888 -82442584 - AluJo SINE Alu -1 311 14 1145 169 18 59 chr11 66340888 66341021 -82442451 - L1MD3 LINE L1 -320 7675 7538 311 253 61 30 chr11 66341030 66341129 -82442343 + L2 LINE L2 3210 3311 -2 2141 108 0 13 chr11 66341193 66341498 -82441974 + AluSx SINE Alu 1 301 -11 1271 122 0 6 chr11 66341507 66341687 -82441785 + AluSq SINE Alu 1 179 -134 2204 74 0 33 chr11 66341688 66341987 -82441485 - AluY SINE Alu -22 289 1 333 291 60 8 chr11 66342036 66342170 -82441302 + MER117 DNA MER1_type 1 141 -56 312 274 46 50 chr11 66343086 66343285 -82440187 + MIR SINE MIR 9 215 -47 290 311 176 0 chr11 66347967 66348086 -82435386 + MIR SINE MIR 27 166 -96 250 261 29 14 chr11 66348201 66348270 -82435202 - MIR SINE MIR -81 127 58 205 100 0 50 chr11 66349275 66349315 -82434157 + (GGGGA)n Simple_repeat Simple_repeat 4 41 0 301 262 47 36 chr11 66350134 66350261 -82433211 + MIR SINE MIR 49 169 -78 312 274 46 50 chr11 66352960 66353159 -82430313 - MIR SINE MIR -47 215 9 333 291 60 8 chr11 66354092 66354226 -82429246 - MER117 DNA MER1_type -56 141 1 2231 72 0 33 chr11 66354275 66354581 -82428891 + AluY SINE Alu 1 296 -15 2310 74 0 14 chr11 66354600 66354897 -82428575 + AluY SINE Alu 9 301 -10 1433 201 14 7 chr11 66354905 66355189 -82428283 + AluJb SINE Alu 11 296 -16 1950 155 0 3 chr11 66355189 66355498 -82427974 + AluSx SINE Alu 1 308 -4 2138 87 35 3 chr11 66355501 66355790 -82427682 + AluSx SINE Alu 1 298 -14 1887 227 28 21 chr11 66355790 66356353 -82427119 + L1ME1 LINE L1 5596 6162 -4 2108 141 0 0 chr11 66356542 66356848 -82426624 - AluJo SINE Alu -2 310 5 300 308 59 77 chr11 66356857 66357078 -82426394 - L1ME3 LINE L1 -2 6160 5944 568 292 15 49 chr11 66357608 66357872 -82425600 + L1MC/D LINE L1 5566 5820 -1988 2387 69 0 7 chr11 66357986 66358292 -82425180 - AluY SINE Alu -7 304 1 2093 108 3 0 chr11 66358292 66358587 -82424885 - AluSx SINE Alu -16 296 1 2149 105 10 0 chr11 66358589 66358885 -82424587 - AluSx SINE Alu -13 299 1 310 137 11 23 chr11 66358885 66358927 -82424545 - Alu SINE Alu -303 0 2 952 243 84 9 chr11 66358927 66359219 -82424253 - L1ME3 LINE L1 -274 5847 5532 2089 102 3 16 chr11 66359593 66359897 -82423575 - AluSx SINE Alu -12 300 1 196 286 0 0 chr11 66360079 66360121 -82423351 + MIR SINE MIR 111 152 -110 514 266 63 0 chr11 66363506 66363681 -82419791 + MIR SINE MIR 26 214 -48 276 219 0 31 chr11 66364713 66364777 -82418695 + (CATG)n Simple_repeat Simple_repeat 1 62 0 500 333 56 5 chr11 66365334 66365532 -82417940 + MIR SINE MIR 21 228 -34 589 275 127 13 chr11 66367614 66367843 -82415629 + MIR SINE MIR 8 262 0 200 245 0 19 chr11 66369210 66369263 -82414209 + T-rich Low_complexity Low_complexity 2 53 0 198 0 0 0 chr11 66369582 66369604 -82413868 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 325 266 65 58 chr11 66370988 66371142 -82412330 + MIR SINE MIR 72 226 -36 264 152 22 0 chr11 66371170 66371216 -82412256 + L2 LINE L2 3263 3309 -4 475 240 39 7 chr11 66371277 66371431 -82412041 - MER103 DNA DNA 0 166 8 248 294 59 29 chr11 66374599 66374701 -82408771 + MIR SINE MIR 60 150 -58 358 275 96 72 chr11 66376234 66376401 -82407071 + MIR SINE MIR 58 228 -34 180 0 0 0 chr11 66377190 66377210 -82406262 + (TCTG)n Simple_repeat Simple_repeat 2 21 0 1329 156 5 5 chr11 66377396 66377608 -82405864 + AluSx SINE Alu 1 212 -100 424 85 0 0 chr11 66377608 66377667 -82405805 + AluSq/x SINE Alu 78 136 -177 1876 122 10 3 chr11 66377667 66377955 -82405517 + AluSg SINE Alu 1 290 -20 1814 156 0 3 chr11 66377984 66378285 -82405187 + AluSg SINE Alu 1 300 -10 880 191 0 36 chr11 66378314 66378482 -82404990 + AluJb SINE Alu 141 302 -10 621 259 146 46 chr11 66378656 66378709 -82404763 - L2 LINE L2 -719 2595 2549 2297 87 7 0 chr11 66378709 66379018 -82404454 + AluSx SINE Alu 1 311 -1 621 259 146 46 chr11 66379018 66379334 -82404138 - L2 LINE L2 -765 2549 2189 188 279 66 0 chr11 66379988 66380049 -82403423 + MIR SINE MIR 81 145 -63 2289 104 3 0 chr11 66380124 66380431 -82403041 - AluSp SINE Alu -4 309 2 687 305 21 0 chr11 66380532 66380722 -82402750 - MIR SINE MIR -19 243 50 378 264 129 16 chr11 66380756 66380883 -82402589 + MIR SINE MIR 37 173 -61 1698 171 37 0 chr11 66381696 66381995 -82401477 + AluJo SINE Alu 1 310 -2 376 297 25 52 chr11 66382164 66382200 -82401272 - MIR SINE MIR -33 229 194 2249 112 0 0 chr11 66382200 66382512 -82400960 - AluSx SINE Alu 0 312 1 376 297 25 52 chr11 66382512 66382697 -82400775 - MIR SINE MIR -68 194 15 232 313 88 14 chr11 66382656 66382803 -82400669 + MIR SINE MIR 33 190 -72 * 2514 61 0 0 chr11 66384980 66385290 -82398182 - AluY SINE Alu -1 310 1 1932 133 7 0 chr11 66385337 66385637 -82397835 + AluSx SINE Alu 1 302 0 2082 101 14 3 chr11 66385648 66385945 -82397527 + AluSg SINE Alu 1 300 -10 1873 110 4 4 chr11 66386045 66386317 -82397155 + AluSx SINE Alu 40 311 -1 347 244 71 10 chr11 66386568 66386765 -82396707 + L1 LINE L1 5191 5399 -747 1177 221 79 38 chr11 66386860 66387108 -82396364 + LTR24B LTR ERV1 81 318 -258 2041 141 3 0 chr11 66387108 66387414 -82396058 - AluSx SINE Alu -5 307 1 1177 221 79 38 chr11 66387414 66387636 -82395836 + LTR24B LTR ERV1 318 570 -6 364 62 0 0 chr11 66387635 66387683 -82395789 + MSTD LTR MaLR 7 54 -342 * 628 47 153 0 chr11 66387684 66387769 -82395703 + AluS SINE Alu 3 100 -213 1425 99 5 0 chr11 66387769 66387960 -82395512 - AluSq SINE Alu -116 197 6 616 177 81 8 chr11 66387967 66388091 -82395381 - FLAM_C SINE Alu 0 133 1 584 269 250 16 chr11 66388111 66388427 -82395045 + LTR33 LTR ERVL 112 501 -20 2604 45 0 0 chr11 66388567 66388876 -82394596 - AluY SINE Alu -1 310 2 370 249 5 69 chr11 66389304 66389493 -82393979 + CT-rich Low_complexity Low_complexity 2 178 0 1088 145 0 17 chr11 66390235 66390407 -82393065 - AluSg/x SINE Alu -10 300 132 2170 113 17 0 chr11 66390407 66390709 -82392763 - AluSx SINE Alu -5 307 1 306 336 83 22 chr11 66390884 66391161 -82392311 - L2 LINE L2 -159 3113 2820 1999 144 3 7 chr11 66391275 66391580 -82391892 + AluSx SINE Alu 1 304 -8 470 287 153 25 chr11 66391602 66391804 -82391668 - MIR SINE MIR -22 240 13 2413 68 13 0 chr11 66392986 66393293 -82390179 - AluY SINE Alu 0 311 1 2070 112 23 7 chr11 66393529 66393832 -82389640 + AluSx SINE Alu 1 308 -4 312 285 20 93 chr11 66393908 66394059 -82389413 - L2 LINE L2 -217 3055 2916 1692 84 0 9 chr11 66394439 66394664 -82388808 - L1PB1 LINE L1 -1 6150 5928 294 158 146 73 chr11 66396591 66396673 -82386799 + L2 LINE L2 3222 3309 -4 1372 158 0 0 chr11 66396674 66396883 -82386589 + AluJb SINE Alu 90 298 -14 2351 46 0 3 chr11 66397284 66397594 -82385878 + AluY SINE Alu 1 309 0 1714 154 7 23 chr11 66397750 66397911 -82385561 - AluSx SINE Alu -18 294 139 2187 93 3 10 chr11 66397911 66398212 -82385260 - AluSg SINE Alu -11 299 1 1714 154 7 23 chr11 66398212 66398349 -82385123 - AluSx SINE Alu -173 139 1 210 118 0 0 chr11 66398669 66398703 -82384769 + (TGAA)n Simple_repeat Simple_repeat 2 35 0 457 296 50 25 chr11 66398834 66399033 -82384439 + MIR SINE MIR 39 242 -20 2139 112 0 0 chr11 66401222 66401517 -82381955 + AluSx SINE Alu 6 300 -12 2258 92 0 13 chr11 66401518 66401823 -82381649 + AluY SINE Alu 1 301 -10 1451 197 14 7 chr11 66401831 66402115 -82381357 + AluJb SINE Alu 11 296 -16 1950 155 0 3 chr11 66402115 66402424 -82381048 + AluSx SINE Alu 1 308 -4 2115 90 35 3 chr11 66402427 66402716 -82380756 + AluSx SINE Alu 1 298 -14 1887 227 28 21 chr11 66402716 66403279 -82380193 + L1ME1 LINE L1 5596 6162 -4 2085 147 0 0 chr11 66403468 66403774 -82379698 - AluJo SINE Alu -2 310 5 300 308 59 77 chr11 66403783 66404004 -82379468 - L1ME3 LINE L1 -2 6160 5944 568 294 18 55 chr11 66404536 66404850 -82378622 + L1ME LINE L1 5566 5868 -253 2393 69 0 3 chr11 66404915 66405220 -82378252 - AluSg SINE Alu -6 304 1 305 301 133 6 chr11 66405220 66405393 -82378079 + L1MC4a LINE L1 5855 6049 -1759 21 36 0 0 chr11 66405449 66405477 -82377995 + AT_rich Low_complexity Low_complexity 1 28 0 1917 114 7 4 chr11 66405935 66406243 -82377229 + AluSx SINE Alu 12 320 0 1145 169 18 59 chr11 66406320 66406459 -82377013 - L1MD3 LINE L1 -196 7799 7675 1691 164 17 0 chr11 66406459 66406751 -82376721 - AluJo SINE Alu -2 310 14 1145 169 18 59 chr11 66406751 66406884 -82376588 - L1MD3 LINE L1 -320 7675 7538 311 253 61 30 chr11 66406893 66406992 -82376480 + L2 LINE L2 3210 3311 -2 2141 108 0 13 chr11 66407056 66407361 -82376111 + AluSx SINE Alu 1 301 -11 1271 122 0 6 chr11 66407370 66407550 -82375922 + AluSq SINE Alu 1 179 -134 1965 114 3 30 chr11 66407551 66407849 -82375623 - AluSx SINE Alu -22 290 1 1987 125 7 0 chr11 66407859 66408159 -82375313 - AluSx SINE Alu 0 302 1 2357 74 0 0 chr11 66408206 66408504 -82374968 + AluY SINE Alu 1 298 -13 949 181 0 0 chr11 66408796 66408962 -82374510 - FRAM SINE Alu 0 40 1 962 199 0 0 chr11 66408806 66408972 -82374500 - AluJo SINE Alu 0 302 137 2093 93 40 0 chr11 66408982 66409260 -82374212 - AluSg SINE Alu -16 294 6 348 240 256 0 chr11 66409265 66409386 -82374086 - MIR SINE MIR -96 166 15 713 259 197 60 chr11 66409683 66409775 -82373697 + LTR33 LTR ERVL 5 83 -438 2318 78 0 3 chr11 66409775 66410069 -82373403 - AluSq SINE Alu -15 298 6 616 177 81 8 chr11 66410076 66410200 -82373272 - AluJo SINE Alu -169 133 1 713 259 197 60 chr11 66410200 66410536 -82372936 + LTR33 LTR ERVL 88 501 -20 2484 61 0 3 chr11 66410677 66410989 -82372483 - AluY SINE Alu 0 311 1 1372 158 0 0 chr11 66411390 66411599 -82371873 - AluJb SINE Alu -14 298 90 294 158 146 73 chr11 66411600 66411682 -82371790 - L2 LINE L2 -4 3309 3222 1738 80 0 5 chr11 66413557 66413781 -82369691 + L1PB1 LINE L1 5928 6150 -1 312 285 20 93 chr11 66414161 66414312 -82369160 + L2 LINE L2 2916 3055 -217 2070 112 23 7 chr11 66414388 66414691 -82368781 - AluSx SINE Alu -4 308 1 2521 64 0 0 chr11 66414927 66415238 -82368234 + AluY SINE Alu 1 311 0 185 323 110 24 chr11 66416463 66416590 -82366882 - L2 LINE L2 -7 3306 3169 1946 138 10 16 chr11 66417108 66417413 -82366059 + AluJb SINE Alu 5 307 -5 1909 111 0 102 chr11 66417448 66417791 -82365681 + AluSg1 SINE Alu 1 308 -1 257 377 25 37 chr11 66418173 66418494 -82364978 - L2 LINE L2 -108 3164 2848 1841 157 7 0 chr11 66419468 66419762 -82363710 + AluJb SINE Alu 1 296 -16 240 211 70 0 chr11 66419964 66420021 -82363451 + MIR SINE MIR 79 139 -123 233 254 95 0 chr11 66423721 66423784 -82359688 + MIR SINE MIR 77 145 -117 1607 93 13 13 chr11 66424463 66424689 -82358783 - AluSg/x SINE Alu -16 296 71 363 210 20 30 chr11 66424700 66424800 -82358672 - MIR3 SINE MIR -45 163 65 2121 103 31 0 chr11 66426353 66426643 -82356829 - AluSx SINE Alu -13 299 1 256 342 70 0 chr11 66426698 66426856 -82356616 + L2 LINE L2 2850 3018 -254 2313 84 0 3 chr11 66427300 66427596 -82355876 - AluSg SINE Alu -15 295 1 2346 61 7 3 chr11 66427643 66427939 -82355533 + AluY SINE Alu 1 297 -14 1937 108 0 0 chr11 66429145 66429405 -82354067 - AluSx SINE Alu -16 296 37 631 200 9 0 chr11 66429407 66429517 -82353955 - AluJo SINE Alu -84 228 118 436 342 43 27 chr11 66431097 66431284 -82352188 - MIR SINE MIR -29 233 44 260 286 143 34 chr11 66431924 66432099 -82351373 + MIR SINE MIR 51 244 -18 364 263 65 89 chr11 66432615 66432804 -82350668 - MIR SINE MIR -62 146 6 767 278 105 3 chr11 66432898 66433204 -82350268 - L1ME1 LINE L1 -100 6066 5730 2174 77 3 17 chr11 66433897 66434184 -82349288 - AluSq SINE Alu -30 283 1 280 81 0 129 chr11 66434186 66434213 -82349259 + MSTB2 LTR MaLR 388 404 -53 1579 153 52 35 chr11 66434213 66434501 -82348971 + AluJo SINE Alu 1 293 -19 280 81 0 129 chr11 66434501 66434535 -82348937 + MSTB2 LTR MaLR 404 441 -16 680 156 156 0 chr11 66434759 66434887 -82348585 + AluJb SINE Alu 154 301 -11 337 299 71 25 chr11 66434888 66435085 -82348387 + L1MC/D LINE L1 5611 5816 -1992 2300 102 0 0 chr11 66435311 66435615 -82347857 - AluSx SINE Alu -8 304 1 198 0 0 0 chr11 66436807 66436829 -82346643 + (T)n Simple_repeat Simple_repeat 1 22 0 2030 119 27 3 chr11 66437800 66438094 -82345378 + AluSx SINE Alu 1 301 -11 321 371 37 62 chr11 66438224 66438324 -82345148 + L2 LINE L2 2829 2930 -342 186 43 0 0 chr11 66438324 66438347 -82345125 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1798 154 0 0 chr11 66438347 66438627 -82344845 - AluJb SINE Alu -32 280 1 321 371 37 62 chr11 66438627 66438980 -82344492 + L2 LINE L2 2928 3272 0 1902 162 0 7 chr11 66439234 66439536 -82343936 + AluJo SINE Alu 7 306 -6 366 266 125 17 chr11 66439908 66440039 -82343433 - MIR SINE MIR -61 147 37 702 304 21 0 chr11 66440068 66440262 -82343210 + MIR SINE MIR 46 243 -19 2289 104 3 0 chr11 66440363 66440670 -82342802 + AluSp SINE Alu 2 309 -4 188 279 66 0 chr11 66440745 66440806 -82342666 - MIR SINE MIR -63 145 81 621 259 146 46 chr11 66441460 66441776 -82341696 + L2 LINE L2 2189 2549 -765 2297 87 7 0 chr11 66441776 66442085 -82341387 - AluSx SINE Alu -1 311 1 621 259 146 46 chr11 66442085 66442138 -82341334 + L2 LINE L2 2549 2595 -719 840 161 0 40 chr11 66442312 66442461 -82341011 - AluJb SINE Alu -10 302 160 2251 94 0 13 chr11 66442502 66442811 -82340661 - AluSx SINE Alu -6 306 2 188 272 44 79 chr11 66444207 66444321 -82339151 - MIR3 SINE MIR -51 157 48 2011 94 0 4 chr11 66444837 66445104 -82338368 - AluSx SINE Alu -12 300 35 921 132 14 0 chr11 66445406 66445550 -82337922 - AluSg/x SINE Alu -10 300 155 2050 125 27 0 chr11 66446185 66446480 -82336992 + AluSx SINE Alu 1 303 -9 2361 53 0 13 chr11 66447003 66447302 -82336170 - AluY SINE Alu -16 295 1 1372 158 0 0 chr11 66447703 66447912 -82335560 - AluJb SINE Alu -14 298 90 294 158 146 73 chr11 66447913 66447995 -82335477 - L2 LINE L2 -4 3309 3222 1694 81 5 5 chr11 66449870 66450093 -82333379 + L1PB1 LINE L1 5928 6150 -1 312 285 20 93 chr11 66450473 66450624 -82332848 + L2 LINE L2 2916 3055 -217 2070 112 23 7 chr11 66450700 66451003 -82332469 - AluSx SINE Alu -4 308 1 2445 71 3 0 chr11 66451239 66451549 -82331923 + AluY SINE Alu 1 311 0 1528 274 160 19 chr11 66451727 66452366 -82331106 - L2 LINE L2 -862 2452 1698 2121 119 0 3 chr11 66452366 66452676 -82330796 - AluSx SINE Alu -3 309 1 1528 274 160 19 chr11 66452676 66452762 -82330710 - L2 LINE L2 -1616 1698 1625 678 277 144 17 chr11 66453058 66453350 -82330122 + L2 LINE L2 2966 3294 -19 223 313 50 0 chr11 66454115 66454195 -82329277 + MIR SINE MIR 101 184 -78 1146 111 0 23 chr11 66454268 66454440 -82329032 + AluJb SINE Alu 134 301 -11 2271 75 0 3 chr11 66454442 66454735 -82328737 + AluY SINE Alu 1 292 -19 189 0 0 0 chr11 66456306 66456327 -82327145 + (A)n Simple_repeat Simple_repeat 1 21 0 2055 127 7 0 chr11 66456362 66456661 -82326811 - AluSp SINE Alu -12 301 1 730 277 45 32 chr11 66457092 66457402 -82326070 - AluYb8 SINE Alu 0 318 5 41 23 0 0 chr11 66457698 66457741 -82325731 + AT_rich Low_complexity Low_complexity 1 43 0 589 175 36 15 chr11 66457917 66458054 -82325418 - AluSq/x SINE Alu -173 140 1 300 373 63 19 chr11 66458565 66458723 -82324749 + MIR SINE MIR 72 236 -26 371 269 128 27 chr11 66458796 66458979 -82324493 - MIR SINE MIR -3 259 37 2690 56 0 0 chr11 66459884 66460188 -82323284 + AluY SINE Alu 1 304 -7 245 206 0 16 chr11 66460440 66460503 -82322969 + CT-rich Low_complexity Low_complexity 2 63 0 710 176 176 0 chr11 66460931 66461090 -82322382 + MLT1E2 LTR MaLR 435 621 -5 264 358 55 12 chr11 66461206 66461371 -82322101 + L3 LINE CR1 1402 1573 -4 210 118 0 0 chr11 66461384 66461418 -82322054 + (TTCA)n Simple_repeat Simple_repeat 4 37 0 2277 97 10 13 chr11 66461539 66461839 -82321633 - AluSx SINE Alu -13 299 1 223 163 0 23 chr11 66461865 66461908 -82321564 + (TG)n Simple_repeat Simple_repeat 2 43 0 993 171 71 5 chr11 66462038 66462248 -82321224 - MIR SINE MIR -37 225 2 1584 174 20 20 chr11 66462328 66462627 -82320845 + AluJo SINE Alu 11 309 -3 1536 160 73 14 chr11 66463432 66463707 -82319765 - AluJo SINE Alu -11 301 11 185 182 45 23 chr11 66463718 66463762 -82319710 - MIR SINE MIR -60 202 158 512 114 0 0 chr11 66463883 66463953 -82319519 + AluSc SINE Alu 107 176 -133 2188 102 3 51 chr11 66464088 66464402 -82319070 - AluSx SINE Alu -8 304 6 191 250 83 52 chr11 66464406 66464502 -82318970 + MIR SINE MIR 39 137 -125 303 280 39 80 chr11 66465116 66465419 -82318053 + L1MC4a LINE L1 4960 5245 -901 2167 117 3 19 chr11 66465419 66465735 -82317737 + AluSx SINE Alu 1 311 -1 303 280 39 80 chr11 66465735 66465820 -82317652 + L1MC4a LINE L1 5245 5332 -814 382 178 122 19 chr11 66465855 66465962 -82317510 + L1MC4a LINE L1 5711 5828 -1980 1105 235 116 45 chr11 66465990 66466559 -82316913 + L2 LINE L2 2492 3117 -196 2289 96 13 3 chr11 66466559 66466860 -82316612 - AluSx SINE Alu -8 304 1 1105 235 116 45 chr11 66466860 66467048 -82316424 + L2 LINE L2 3117 3290 -23 261 151 0 0 chr11 66467314 66467367 -82316105 + (TG)n Simple_repeat Simple_repeat 2 54 0 197 297 0 16 chr11 66467846 66467910 -82315562 - MIR3 SINE MIR -3 205 143 218 204 0 0 chr11 66468003 66468047 -82315425 - MIR3 SINE MIR -52 156 113 264 167 0 0 chr11 66469051 66469099 -82314373 + (CTCA)n Simple_repeat Simple_repeat 2 49 0 1209 106 0 0 chr11 66469100 66469280 -82314192 + (CCCA)n Simple_repeat Simple_repeat 1 180 0 987 145 0 0 chr11 66469280 66469452 -82314020 + (CTCA)n Simple_repeat Simple_repeat 1 172 0 2032 107 14 10 chr11 66469552 66469842 -82313630 - AluSx SINE Alu -21 291 1 654 181 37 48 chr11 66469854 66470042 -82313430 + L1M4b LINE L1 1369 1554 -5305 1272 164 75 36 chr11 66470046 66470351 -82313121 - L1M4 LINE L1 -1100 5046 4730 1953 141 37 0 chr11 66470355 66470653 -82312819 + AluSx SINE Alu 1 309 -3 1071 222 37 47 chr11 66470666 66470758 -82312714 - MLT2D LTR ERVL -118 296 205 2431 83 0 16 chr11 66470758 66471072 -82312400 - AluSc SINE Alu 0 309 1 1071 222 37 47 chr11 66471072 66471276 -82312196 - MLT2D LTR ERVL -209 205 3 2054 183 7 70 chr11 66471289 66471792 -82311680 - L1MC/D LINE L1 -667 5630 5345 437 161 0 0 chr11 66471839 66471920 -82311552 + MLT1F1 LTR MaLR 325 405 -162 2242 120 0 10 chr11 66472294 66472603 -82310869 + AluSp SINE Alu 1 306 -7 1291 111 0 0 chr11 66472603 66472765 -82310707 + AluSg/x SINE Alu 132 293 -17 2400 168 55 16 chr11 66472767 66473273 -82310199 + L1MC4a LINE L1 6709 7234 -574 417 125 11 91 chr11 66473273 66473361 -82310111 + MLT1A2 LTR MaLR 1 81 -347 1125 155 0 0 chr11 66473361 66473535 -82309937 - AluJb SINE Alu -6 306 133 729 216 39 73 chr11 66473623 66473759 -82309713 + MLT1A2 LTR MaLR 178 306 -68 2462 79 7 7 chr11 66473759 66474064 -82309408 + AluSq SINE Alu 2 306 -7 729 216 39 73 chr11 66474064 66474131 -82309341 + MLT1A2 LTR MaLR 306 374 0 1212 203 34 37 chr11 66474131 66474412 -82309060 + L1MC4a LINE L1 7230 7511 -297 1981 138 0 29 chr11 66474412 66474723 -82308749 + AluJo SINE Alu 1 302 -10 1212 203 34 37 chr11 66474723 66474766 -82308706 + L1MC4a LINE L1 7511 7553 -255 1688 207 137 27 chr11 66474773 66475038 -82308434 + MLT1F LTR MaLR 5 240 -302 2025 145 13 3 chr11 66475038 66475341 -82308131 - AluSx SINE Alu -6 306 1 1688 207 137 27 chr11 66475341 66475558 -82307914 + MLT1F LTR MaLR 240 540 -2 356 258 11 0 chr11 66475561 66475650 -82307822 + L1MC4a LINE L1 7554 7643 -165 1355 153 14 14 chr11 66475650 66475873 -82307599 + AluSx SINE Alu 1 223 -89 204 171 14 29 chr11 66476456 66476526 -82306946 + G-rich Low_complexity Low_complexity 1 69 0 322 306 153 0 chr11 66479431 66479555 -82303917 - MIR SINE MIR -48 214 72 243 234 57 40 chr11 66479587 66479648 -82303824 + (TATG)n Simple_repeat Simple_repeat 2 60 -119 3542 111 42 12 chr11 66479648 66480226 -82303246 - LTR49 LTR ERV1 0 595 1 243 234 57 40 chr11 66480226 66480339 -82303133 + (TATG)n Simple_repeat Simple_repeat 60 179 0 240 347 7 20 chr11 66481277 66481427 -82302045 + C-rich Low_complexity Low_complexity 1 148 0 2400 98 0 16 chr11 66482201 66482508 -82300964 + AluSx SINE Alu 1 302 -10 210 315 68 0 chr11 66483357 66483474 -82299998 + MIR SINE MIR 59 142 -66 2141 117 14 0 chr11 66483624 66483914 -82299558 - AluSx SINE Alu -18 294 1 988 89 0 8 chr11 66484251 66484375 -82299097 - AluY SINE Alu -187 124 2 1110 118 72 30 chr11 66484428 66484678 -82298794 + Tigger4(Zombi) DNA MER2_type 1 2731 0 996 104 36 90 chr11 66484682 66484734 -82298738 - HSMAR2 DNA Mariner -9 1293 1240 2081 141 3 10 chr11 66484734 66485046 -82298426 + AluSg SINE Alu 1 310 0 996 104 36 90 chr11 66485046 66485215 -82298257 - HSMAR2 DNA Mariner -62 1240 1084 2156 135 0 6 chr11 66485216 66485528 -82297944 + AluSx SINE Alu 1 310 -2 865 135 0 47 chr11 66485545 66485561 -82297911 - FLAM_C SINE Alu -171 141 126 2529 73 0 0 chr11 66485561 66485861 -82297611 + AluY SINE Alu 1 300 -11 865 135 0 47 chr11 66485861 66485992 -82297480 - FLAM_C SINE Alu -186 126 1 756 90 0 0 chr11 66485993 66486104 -82297368 - HSMAR2 DNA Mariner -1189 113 3 1182 302 47 0 chr11 66486144 66486637 -82296835 + L1M4 LINE L1 3409 3924 -2222 2146 183 87 8 chr11 66486818 66487288 -82296184 - MLT1F1 LTR MaLR -27 540 34 2492 97 0 0 chr11 66487288 66487635 -82295837 + AluSg SINE Alu 1 347 0 332 204 108 161 chr11 66487668 66487947 -82295525 + L2 LINE L2 1099 1362 -1952 1869 141 37 7 chr11 66487947 66488244 -82295228 - AluJb SINE Alu -6 306 1 847 159 0 0 chr11 66488356 66488488 -82294984 - FLAM_C SINE Alu -1 132 1 374 304 70 40 chr11 66488514 66488741 -82294731 + L2 LINE L2 3080 3313 0 286 250 91 0 chr11 66488841 66488929 -82294543 + L2 LINE L2 3141 3236 -36 598 251 15 87 chr11 66489518 66489570 -82293902 + MIR SINE MIR 8 62 -200 2224 113 0 7 chr11 66489570 66489872 -82293600 - AluSx SINE Alu -12 300 1 598 251 15 87 chr11 66489872 66490014 -82293458 + MIR SINE MIR 62 188 -74 2209 123 7 0 chr11 66490347 66490648 -82292824 + AluSq SINE Alu 1 303 -10 351 0 0 0 chr11 66490820 66490859 -82292613 + (A)n Simple_repeat Simple_repeat 1 39 0 328 332 10 20 chr11 66490895 66491196 -82292276 - AluSp SINE Alu -5 298 1 633 136 2 2 chr11 66491609 66491719 -82291753 - L1P4 LINE L1 -400 5774 5665 2162 105 10 13 chr11 66491744 66492049 -82291423 - AluSx SINE Alu -8 304 1 455 254 6 55 chr11 66492049 66492214 -82291258 - L1M4b LINE L1 -5488 1371 1215 945 191 29 0 chr11 66492238 66492411 -82291061 + AluJo SINE Alu 120 297 -15 510 218 62 67 chr11 66492582 66492689 -82290783 - L1M4b LINE L1 -6671 188 81 2237 99 3 13 chr11 66492689 66492993 -82290479 + AluSg SINE Alu 1 301 -9 510 218 62 67 chr11 66492993 66493064 -82290408 - L1M4b LINE L1 -6778 81 11 21 0 0 0 chr11 66493072 66493093 -82290379 + AT_rich Low_complexity Low_complexity 1 21 0 1183 166 166 30 chr11 66493181 66493314 -82290158 - AluJo SINE Alu 0 302 188 450 0 0 0 chr11 66493314 66493364 -82290108 + (TG)n Simple_repeat Simple_repeat 2 51 0 1183 166 166 30 chr11 66493364 66493495 -82289977 - AluJo SINE Alu -114 188 2 2217 99 3 3 chr11 66493528 66493822 -82289650 + AluSc SINE Alu 3 296 -13 428 341 45 29 chr11 66493822 66494068 -82289404 - L1M4 LINE L1 -3325 2821 2572 276 336 30 8 chr11 66494783 66494914 -82288558 - L1M4 LINE L1 -3069 3077 2944 2189 95 23 0 chr11 66494943 66495247 -82288225 - AluSq SINE Alu 0 313 3 228 35 0 0 chr11 66495455 66495484 -82287988 + (CA)n Simple_repeat Simple_repeat 2 30 0 241 266 28 0 chr11 66495582 66495691 -82287781 + CT-rich Low_complexity Low_complexity 1 112 0 380 254 88 102 chr11 66495779 66495836 -82287636 - L1M4 LINE L1 -3738 2408 2352 2239 137 0 3 chr11 66495836 66496149 -82287323 - AluSx SINE Alu 0 312 1 380 254 88 102 chr11 66496149 66496243 -82287229 - L1M4 LINE L1 -3794 2352 2258 1754 186 16 3 chr11 66496243 66496550 -82286922 - AluJo SINE Alu -1 311 1 380 254 88 102 chr11 66496550 66496680 -82286792 - L1M4 LINE L1 -3888 2258 2130 754 212 26 32 chr11 66496738 66496846 -82286626 + MLT1D LTR MaLR 1 109 -396 2083 135 0 0 chr11 66496846 66497135 -82286337 - AluSx SINE Alu -23 289 1 754 212 26 32 chr11 66497135 66497215 -82286257 + MLT1D LTR MaLR 109 188 -317 1491 115 146 0 chr11 66497220 66497481 -82285991 + AluSg SINE Alu 1 299 -1 215 268 74 142 chr11 66497760 66497950 -82285522 + MIR SINE MIR 21 197 -65 1980 71 75 34 chr11 66499159 66499453 -82284019 + AluSg SINE Alu 1 306 -4 678 203 0 0 chr11 66500214 66500332 -82283140 + FLAM_C SINE Alu 1 118 -15 282 160 0 0 chr11 66500341 66500391 -82283081 + GA-rich Low_complexity Low_complexity 2 51 0 189 274 62 44 chr11 66502041 66502154 -82281318 + MIR SINE MIR 112 226 -36 2198 133 0 0 chr11 66502155 66502455 -82281017 + AluSx SINE Alu 1 300 -12 207 100 0 0 chr11 66502645 66502675 -82280797 + (T)n Simple_repeat Simple_repeat 1 30 0 1800 75 0 22 chr11 66504033 66504259 -82279213 - AluSg SINE Alu -89 221 1 426 226 61 0 chr11 66504259 66504374 -82279098 - L1MC/D LINE L1 -2317 5491 5370 515 135 0 42 chr11 66504378 66504474 -82278998 - AluJo SINE Alu 0 312 221 1017 142 39 7 chr11 66504474 66504629 -82278843 - AluJo SINE Alu -124 188 29 1789 187 3 0 chr11 66504629 66504929 -82278543 - AluJo SINE Alu -9 303 3 2256 114 0 19 chr11 66505143 66505451 -82278021 - AluSq SINE Alu -11 302 1 2536 71 0 6 chr11 66505513 66505824 -82277648 - AluY SINE Alu -2 309 1 551 145 0 170 chr11 66505826 66505985 -82277487 - AluJo/FLAM SINE Alu -170 132 1 2102 111 3 66 chr11 66505996 66506330 -82277142 - AluSq SINE Alu 0 313 1 595 292 98 59 chr11 66506391 66506830 -82276642 - L1MC/D LINE L1 -1159 4987 4532 2273 111 0 10 chr11 66507116 66507423 -82276049 - AluSq SINE Alu -9 304 1 2144 153 36 13 chr11 66507423 66507815 -82275657 - L1MC2 LINE L1 -140 6187 5787 1130 202 39 67 chr11 66507810 66508104 -82275368 - L1MC2 LINE L1 -568 5581 5280 * 2323 108 3 0 chr11 66508104 66508411 -82275061 + AluSx SINE Alu 4 311 -1 1130 202 39 67 chr11 66508411 66508638 -82274834 - L1MC2 LINE L1 -869 5280 5074 1854 186 0 3 chr11 66508638 66508939 -82274533 + AluJo SINE Alu 1 300 -12 1130 202 39 67 chr11 66508939 66509090 -82274382 - L1MC2 LINE L1 -1075 5074 4920 320 248 48 88 chr11 66509137 66509262 -82274210 + MIR3 SINE MIR 41 160 -48 212 286 63 48 chr11 66509661 66509787 -82273685 - MIR3 SINE MIR -3 205 78 502 313 198 14 chr11 66510152 66510734 -82272738 + L2 LINE L2 1327 2015 -1299 1302 273 62 48 chr11 66510734 66511010 -82272462 - L1MC2 LINE L1 -1181 4948 4677 2194 114 27 0 chr11 66511010 66511308 -82272164 - AluSx SINE Alu -3 309 4 1302 273 62 48 chr11 66511308 66511742 -82271730 - L1MC2 LINE L1 -1452 4677 4223 1872 100 12 0 chr11 66511742 66511982 -82271490 - AluSx SINE Alu -69 243 1 1302 273 62 48 chr11 66511982 66512097 -82271375 - L1MC2 LINE L1 -1906 4223 4111 312 260 62 49 chr11 66512167 66512327 -82271145 - L1MC2 LINE L1 -2070 4059 3843 1364 181 0 4 chr11 66512327 66512553 -82270919 + AluJb SINE Alu 70 294 -18 251 254 0 0 chr11 66512553 66512612 -82270860 - L1MC2 LINE L1 -2283 3846 3788 769 262 53 105 chr11 66512618 66512928 -82270544 - L1MC2 LINE L1 -2424 3705 3380 1550 133 119 25 chr11 66512928 66513213 -82270259 - AluJo SINE Alu 0 312 1 769 262 53 105 chr11 66513213 66513291 -82270181 - L1MC2 LINE L1 -2749 3380 3299 2226 65 41 37 chr11 66513291 66513585 -82269887 - AluY SINE Alu -16 295 1 769 262 53 105 chr11 66513585 66513738 -82269734 - L1MC2 LINE L1 -2830 3299 3140 1981 73 0 0 chr11 66513738 66513972 -82269500 + AluY SINE Alu 69 302 -9 769 262 53 105 chr11 66513972 66514022 -82269450 - L1MC2 LINE L1 -2989 3140 3089 812 169 11 90 chr11 66514022 66514199 -82269273 - FRAM SINE Alu -2 164 2 769 262 53 105 chr11 66514199 66514271 -82269201 - L1MC2 LINE L1 -3040 3089 3015 2035 115 30 23 chr11 66514271 66514575 -82268897 - AluSx SINE Alu -6 306 1 769 262 53 105 chr11 66514575 66514725 -82268747 - L1MC2 LINE L1 -3114 3015 2931 873 219 71 18 chr11 66514738 66514887 -82268585 - L1MB7 LINE L1 -21 6163 6015 2369 162 46 6 chr11 66514887 66515401 -82268071 - L1MB7 LINE L1 -294 5890 5428 2145 108 0 55 chr11 66515407 66515732 -82267740 - AluSg SINE Alu -3 307 1 2565 251 84 35 chr11 66515740 66516659 -82266813 - L1M4 LINE L1 -2188 3958 2963 1463 116 32 8 chr11 66516659 66516910 -82266562 - L1MA4 LINE L1 -5 6295 6039 2565 251 84 35 chr11 66516910 66517205 -82266267 - L1M4 LINE L1 -3183 2963 2684 876 268 22 17 chr11 66517219 66517450 -82266022 - MIR SINE MIR -28 234 3 410 283 25 88 chr11 66517499 66517927 -82265545 - L1M4 LINE L1 -3556 2590 2195 2165 106 3 3 chr11 66517927 66518220 -82265252 + AluSq SINE Alu 18 310 -3 410 283 25 88 chr11 66518220 66518278 -82265194 - L1M4 LINE L1 -3951 2195 2135 1947 133 7 20 chr11 66518447 66518749 -82264723 - AluJo SINE Alu -14 298 1 550 221 0 0 chr11 66519040 66519135 -82264337 - AluJb SINE Alu -89 223 129 2103 125 0 0 chr11 66519158 66519438 -82264034 - AluSx SINE Alu -32 280 1 830 281 107 16 chr11 66519459 66520214 -82263258 - L1MC2 LINE L1 -4550 1620 745 1590 186 61 0 chr11 66520351 66520631 -82262841 - AluJb SINE Alu -2 310 14 2299 108 0 3 chr11 66520649 66520946 -82262526 - AluSg1 SINE Alu -13 296 1 1529 177 49 24 chr11 66520949 66521237 -82262235 - AluJo SINE Alu -17 295 1 2561 80 0 0 chr11 66521237 66521547 -82261925 - AluY SINE Alu 0 311 1 881 162 0 7 chr11 66521547 66521689 -82261783 - AluJo SINE Alu -169 143 3 2732 32 0 3 chr11 66521811 66522121 -82261351 - AluY SINE Alu -2 309 1 2297 107 0 7 chr11 66522121 66522428 -82261044 - AluSx SINE Alu -6 306 1 308 111 14 42 chr11 66522607 66522679 -82260793 - L1MB8 LINE L1 0 6178 6109 2127 117 0 0 chr11 66522726 66523046 -82260426 - AluSx SINE Alu 0 320 1 1910 197 56 0 chr11 66523049 66523495 -82259977 - L1MB7 LINE L1 -18 6166 5696 1213 124 6 0 chr11 66523495 66523664 -82259808 - AluSg/x SINE Alu -13 299 130 2236 108 0 3 chr11 66523669 66523964 -82259508 - AluSx SINE Alu -18 294 1 971 184 21 0 chr11 66523970 66524160 -82259312 - L1MB7 LINE L1 -484 5694 5501 213 94 0 0 chr11 66524164 66524196 -82259276 + (TTA)n Simple_repeat Simple_repeat 2 33 0 231 304 95 6 chr11 66524313 66524471 -82259001 + L2 LINE L2 2559 2730 -584 271 172 276 23 chr11 66524810 66524897 -82258575 + L2 LINE L2 3164 3272 0 199 277 15 15 chr11 66526196 66526261 -82257211 - MIR SINE MIR -115 93 29 233 280 67 0 chr11 66526362 66526437 -82257035 + MIR SINE MIR 79 158 -104 332 235 153 0 chr11 66526542 66526640 -82256832 - MIR SINE MIR -79 183 71 432 279 65 7 chr11 66527324 66527478 -82255994 - MIR SINE MIR -19 243 81 2410 97 7 0 chr11 66527498 66527798 -82255674 - AluSx SINE Alu -10 302 1 2130 87 0 4 chr11 66527948 66528233 -82255239 + AluSx SINE Alu 20 303 0 191 111 0 0 chr11 66528233 66528260 -82255212 - MIR SINE MIR -85 123 97 2016 130 7 7 chr11 66528795 66529087 -82254385 + AluJb SINE Alu 1 292 -20 2338 113 0 0 chr11 66533302 66533613 -82249859 - AluSq SINE Alu -2 311 1 618 206 0 0 chr11 66535070 66535177 -82248295 - FLAM_A SINE Alu -16 126 20 311 337 77 50 chr11 66535188 66535346 -82248126 - L1MC4a LINE L1 -1878 5930 5765 1657 125 16 99 chr11 66535346 66535659 -82247813 - AluJo SINE Alu -20 292 6 311 337 77 50 chr11 66535659 66535681 -82247791 - L1MC4a LINE L1 -2043 5765 5745 281 244 13 26 chr11 66535722 66535800 -82247672 + CT-rich Low_complexity Low_complexity 3 79 0 237 132 0 0 chr11 66536020 66536058 -82247414 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 807 201 0 0 chr11 66536063 66536242 -82247230 + (TGAG)n Simple_repeat Simple_repeat 2 180 0 1008 164 2 2 chr11 66536266 66536674 -82246798 + (TGAG)n Simple_repeat Simple_repeat 1 408 0 504 117 0 0 chr11 66536676 66536753 -82246719 + (TGGG)n Simple_repeat Simple_repeat 1 77 0 2479 60 0 10 chr11 66536881 66537180 -82246292 - AluY SINE Alu -15 296 1 2228 105 3 3 chr11 66537216 66537511 -82245961 - AluSx SINE Alu -17 295 1 616 243 81 83 chr11 66537573 66537706 -82245766 - L2 LINE L2 -123 3190 3058 2189 104 0 0 chr11 66537706 66538083 -82245389 + AluSx SINE Alu 3 379 0 616 243 81 83 chr11 66538083 66538120 -82245352 - L2 LINE L2 -255 3058 3022 1700 124 22 96 chr11 66538120 66538271 -82245201 + AluSx SINE Alu 1 117 -195 2291 109 10 10 chr11 66538271 66538583 -82244889 + AluSx SINE Alu 1 312 0 1700 124 22 96 chr11 66538583 66538754 -82244718 + AluSx SINE Alu 117 299 -13 616 243 81 83 chr11 66538754 66539005 -82244467 - L2 LINE L2 -291 3022 2771 421 104 0 4 chr11 66539095 66539179 -82244293 + L1MA2 LINE L1 5240 5321 -835 6141 91 32 29 chr11 66539198 66539239 -82244233 + L1MA2 LINE L1 5294 5333 -971 1567 157 23 102 chr11 66539239 66539582 -82243890 + AluYb8 SINE Alu 3 318 0 6141 91 32 29 chr11 66539582 66540548 -82242924 + L1MA2 LINE L1 5333 6304 0 993 241 129 21 chr11 66540559 66540899 -82242573 - L2 LINE L2 -757 2557 2181 182 133 0 0 chr11 66540885 66540915 -82242557 + L3b LINE CR1 1530 1559 -24 * 191 310 58 82 chr11 66540903 66541004 -82242468 + L2 LINE L2 2912 3009 -263 2374 58 3 7 chr11 66541004 66541299 -82242173 - AluY SINE Alu -17 294 1 191 310 58 82 chr11 66541299 66541368 -82242104 + L2 LINE L2 3009 3078 -194 2409 96 3 0 chr11 66541371 66541672 -82241800 + AluSp SINE Alu 1 302 -11 1156 167 7 119 chr11 66541823 66542117 -82241355 - AluJo SINE Alu -51 261 1 2420 53 3 20 chr11 66542144 66542448 -82241024 + AluY SINE Alu 1 299 -12 934 185 0 0 chr11 66542457 66542614 -82240858 + FRAM SINE Alu 1 157 -19 2355 105 3 13 chr11 66542970 66543285 -82240187 - AluSx SINE Alu 0 312 1 480 226 9 0 chr11 66543384 66543490 -82239982 - MLT1G1 LTR MaLR -17 578 472 345 133 33 0 chr11 66543510 66543570 -82239902 - MLT1G1 LTR MaLR -193 349 288 378 0 0 0 chr11 66543575 66543617 -82239855 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 1260 108 0 21 chr11 66543699 66543885 -82239587 - U2 snRNA snRNA -1 187 6 697 246 65 33 chr11 66543886 66544153 -82239319 - MLT1G1 LTR MaLR -271 324 5 3001 157 34 4 chr11 66544409 66544881 -82238591 + MER66B LTR ERV1 1 486 0 2401 97 0 0 chr11 66545170 66545478 -82237994 - AluSg SINE Alu -2 308 1 2154 122 7 3 chr11 66546519 66546815 -82236657 - AluSc SINE Alu -12 297 1 551 260 39 0 chr11 66547205 66547332 -82236140 + L2 LINE L2 3141 3272 0 1927 160 0 13 chr11 66547589 66547895 -82235577 + AluJo SINE Alu 1 302 -10 2148 82 0 73 chr11 66547897 66548212 -82235260 + AluSc SINE Alu 3 294 -15 331 272 78 47 chr11 66548229 66548549 -82234923 - L1M4 LINE L1 -2687 3459 3130 1777 157 47 7 chr11 66548780 66549080 -82234392 - AluJo SINE Alu 0 312 1 2557 67 0 0 chr11 66549117 66549415 -82234057 - AluY SINE Alu -13 298 1 1765 163 31 0 chr11 66550204 66550492 -82232980 + AluSx SINE Alu 1 297 -15 2153 107 14 14 chr11 66550846 66551136 -82232336 + AluSx SINE Alu 1 290 -22 2339 50 7 4 chr11 66551249 66551530 -82231942 - AluSg SINE Alu -28 282 1 2022 136 3 3 chr11 66551668 66551977 -82231495 - AluSx SINE Alu -3 309 1 1440 159 83 29 chr11 66551979 66552256 -82231216 - AluJo SINE Alu -8 294 3 271 274 16 97 chr11 66552284 66552408 -82231064 - MIR SINE MIR -92 170 57 794 144 0 16 chr11 66552434 66552559 -82230913 - FLAM_C SINE Alu -16 127 5 1281 160 0 15 chr11 66552582 66552788 -82230684 + AluSg/x SINE Alu 108 310 0 557 260 188 5 chr11 66553355 66553547 -82229925 + MIR SINE MIR 2 228 -34 22 0 0 0 chr11 66553760 66553782 -82229690 + AT_rich Low_complexity Low_complexity 1 22 0 799 162 0 22 chr11 66554833 66554969 -82228503 - FLAM_C SINE Alu 0 133 1 1950 103 92 0 chr11 66555018 66555280 -82228192 + AluSx SINE Alu 1 286 -26 1507 169 86 24 chr11 66555316 66555606 -82227866 - AluJo SINE Alu 0 312 5 289 172 104 104 chr11 66555607 66555693 -82227779 - Charlie1 DNA MER1_type -33 2728 2640 2025 106 10 33 chr11 66555693 66555995 -82227477 + AluSq SINE Alu 1 295 -18 289 172 104 104 chr11 66555995 66556042 -82227430 - Charlie1 DNA MER1_type -120 2641 2595 880 119 0 0 chr11 66556081 66556199 -82227273 + AluSg/x SINE Alu 134 251 -59 2038 139 13 0 chr11 66556239 66556541 -82226931 + AluSx SINE Alu 1 306 -6 1046 156 6 6 chr11 66556563 66556723 -82226749 + AluJo SINE Alu 1 160 -152 2163 123 7 7 chr11 66556837 66557147 -82226325 - AluSg SINE Alu 0 310 1 3686 167 49 23 chr11 66557193 66557245 -82226227 - L1MB7 LINE L1 -16 6168 6119 1868 171 3 0 chr11 66557245 66557538 -82225934 + AluJo SINE Alu 1 294 -18 3686 167 49 23 chr11 66557538 66558265 -82225207 - L1MB7 LINE L1 -65 6119 5369 1268 142 50 36 chr11 66558265 66558484 -82224988 - AluJo SINE Alu -5 307 86 530 122 0 0 chr11 66558485 66558559 -82224913 + FLAM SINE Alu 56 129 -14 285 327 25 31 chr11 66558597 66558756 -82224716 - L1ME LINE L1 -352 5769 5612 514 272 46 26 chr11 66558831 66559026 -82224446 - L1ME1 LINE L1 -20 6146 5948 3079 220 65 22 chr11 66559027 66559766 -82223706 - L1ME1 LINE L1 -489 5677 4971 2334 97 0 3 chr11 66559766 66560076 -82223396 + AluSx SINE Alu 1 309 -3 3079 220 65 22 chr11 66560076 66560128 -82223344 - L1ME1 LINE L1 -1195 4971 4923 2334 85 0 0 chr11 66560128 66560435 -82223037 + AluY SINE Alu 2 308 -3 3079 220 65 22 chr11 66560435 66560533 -82222939 - L1ME1 LINE L1 -1243 4923 4831 2039 118 0 62 chr11 66560533 66560856 -82222616 - AluSx SINE Alu -9 303 1 3079 220 65 22 chr11 66560856 66561181 -82222291 - L1ME1 LINE L1 -1335 4831 4521 1988 89 6 95 chr11 66561181 66561350 -82222122 - AluSq SINE Alu -15 298 116 324 0 0 0 chr11 66561350 66561386 -82222086 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 2088 81 4 7 chr11 66561386 66561658 -82221814 - AluY SINE Alu -28 283 13 1988 89 6 95 chr11 66561658 66561814 -82221658 - AluSq SINE Alu -195 118 1 3079 220 65 22 chr11 66561814 66561910 -82221562 - L1ME1 LINE L1 -1645 4521 4314 827 199 0 26 chr11 66561913 66562069 -82221403 + AluJ SINE Alu 6 157 -155 526 336 69 37 chr11 66562106 66562449 -82221023 - L2 LINE L2 -330 2983 2505 * 901 241 131 42 chr11 66562445 66562551 -82220921 + L2 LINE L2 2596 2691 -622 2251 84 3 3 chr11 66562551 66562860 -82220612 - AluY SINE Alu -2 309 1 901 241 131 42 chr11 66562860 66563411 -82220061 + L2 LINE L2 2691 3313 0 1047 138 0 11 chr11 66563793 66563967 -82219505 + AluJ SINE Alu 141 312 0 264 288 244 29 chr11 66567591 66567865 -82215607 - L2 LINE L2 -1 3271 2939 538 298 115 4 chr11 66567872 66568107 -82215365 - MIR SINE MIR -1 261 1 749 197 15 7 chr11 66570546 66570683 -82212789 + AluJo SINE Alu 153 290 -22 181 322 87 52 chr11 66572661 66572776 -82210696 - MIR SINE MIR -114 148 30 2069 122 7 0 chr11 66573349 66573645 -82209827 + AluSx SINE Alu 1 298 -14 254 258 16 0 chr11 66574466 66574528 -82208944 + L2 LINE L2 3190 3252 -20 266 297 91 8 chr11 66574653 66574832 -82208640 - MIR SINE MIR -17 245 14 2383 120 90 40 chr11 66575407 66575596 -82207876 + MER65A LTR ERV1 1 179 -266 2130 105 10 10 chr11 66575596 66575900 -82207572 + AluSx SINE Alu 1 304 -8 2383 120 90 40 chr11 66575900 66576021 -82207451 + MER65A LTR ERV1 179 293 -152 2178 120 3 0 chr11 66576021 66576330 -82207142 - AluSx SINE Alu -2 310 1 2383 120 90 40 chr11 66576330 66576442 -82207030 + MER65A LTR ERV1 293 445 0 2302 64 7 0 chr11 66576767 66577063 -82206409 + AluY SINE Alu 4 301 -10 184 244 268 0 chr11 66579937 66580019 -82203453 + MIR SINE MIR 159 262 0 2239 98 3 0 chr11 66580121 66580428 -82203044 - AluSc SINE Alu -1 308 1 1763 134 38 10 chr11 66580428 66580719 -82202753 - AluJo SINE Alu -13 299 1 490 307 110 15 chr11 66580810 66581074 -82202398 - L2 LINE L2 -457 2857 2569 257 339 40 32 chr11 66581116 66581240 -82202232 + L2 LINE L2 3183 3307 -6 1942 104 7 29 chr11 66581316 66581623 -82201849 - AluSq SINE Alu -13 300 1 262 313 116 54 chr11 66585302 66585449 -82198023 + MIR SINE MIR 90 245 -17 253 309 71 24 chr11 66585461 66585587 -82197885 - MIR SINE MIR -6 256 125 323 283 133 8 chr11 66585749 66585869 -82197603 + L2 LINE L2 1885 2019 -1295 294 287 108 18 chr11 66585893 66586060 -82197412 + L2 LINE L2 3132 3313 0 260 274 218 53 chr11 66593172 66593548 -82189924 + L2 LINE L2 309 746 -2568 2339 91 0 0 chr11 66593564 66593862 -82189610 - AluY SINE Alu -12 299 2 1157 144 4 31 chr11 66593862 66594091 -82189381 + THE1C LTR MaLR 153 375 0 536 129 24 0 chr11 66594284 66594369 -82189103 - AluY SINE Alu -11 300 214 2180 152 32 94 chr11 66594370 66594871 -82188601 + MER21A LTR ERV1 462 931 0 922 339 143 60 chr11 66594911 66594929 -82188543 + L1MC/D LINE L1 3250 3265 -2881 2173 73 38 0 chr11 66594929 66595216 -82188256 - AluSx SINE Alu -14 298 1 922 339 143 60 chr11 66595216 66596105 -82187367 + L1MC/D LINE L1 3265 4242 -1904 2003 126 3 43 chr11 66596105 66596431 -82187041 + AluSq SINE Alu 1 313 0 922 339 143 60 chr11 66596431 66596470 -82187002 + L1MC/D LINE L1 4242 4276 -1870 256 235 356 0 chr11 66596470 66596585 -82186887 + L1MC/D LINE L1 5436 5591 -2217 600 176 0 0 chr11 66597112 66597203 -82186269 + AluSg/x SINE Alu 139 229 -83 1562 156 0 44 chr11 66597203 66597473 -82185999 - AluJo SINE Alu -53 259 2 2026 111 45 0 chr11 66598033 66598322 -82185150 + AluSx SINE Alu 1 302 -10 470 192 0 0 chr11 66599053 66599126 -82184346 - AluJ/FLAM SINE Alu -234 78 6 1018 95 57 13 chr11 66599891 66600128 -82183344 + AluSq SINE Alu 149 392 0 1384 123 0 0 chr11 66602630 66602817 -82180655 - AluSq SINE Alu -126 187 1 845 59 0 0 chr11 66602843 66602945 -82180527 + AluY SINE Alu 6 107 -204 237 235 132 15 chr11 66603820 66603888 -82179584 + MIR SINE MIR 115 190 -72 724 179 62 12 chr11 66604016 66604178 -82179294 + AluJb SINE Alu 18 187 -125 1074 227 0 5 chr11 66607024 66607222 -82176250 - AluSc SINE Alu -111 198 2 1122 178 0 30 chr11 66607222 66607452 -82176020 + THE1C LTR MaLR 153 375 0 443 256 12 75 chr11 66607885 66608045 -82175427 + MIR SINE MIR 49 198 -64 774 172 0 0 chr11 66608855 66608971 -82174501 + AluJo/FLAM SINE Alu 2 117 -195 1915 130 27 0 chr11 66608972 66609265 -82174207 - AluSx SINE Alu -11 301 1 2023 104 0 14 chr11 66609267 66609564 -82173908 - AluSx SINE Alu -19 293 1 1911 157 6 16 chr11 66609794 66610107 -82173365 - AluJo SINE Alu -2 310 1 205 88 29 0 chr11 66611551 66611585 -82171887 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1292 69 42 21 chr11 66611604 66611793 -82171679 - AluSq SINE Alu -1 312 120 2415 81 0 0 chr11 66611800 66612109 -82171363 - AluSg SINE Alu 0 310 2 201 211 0 0 chr11 66612111 66612149 -82171323 + MIR3 SINE MIR 117 154 -54 2123 107 0 3 chr11 66612601 66612891 -82170581 - AluSx SINE Alu -23 289 1 291 247 165 0 chr11 66612929 66613026 -82170446 - L2 LINE L2 -1 3312 3200 866 119 0 0 chr11 66613113 66613231 -82170241 + FLAM_C SINE Alu 1 118 -15 464 238 205 14 chr11 66613353 66613398 -82170074 - L2 LINE L2 -232 3081 3046 2065 125 7 3 chr11 66613398 66613695 -82169777 + AluSq SINE Alu 1 298 -15 464 238 205 14 chr11 66613695 66613923 -82169549 - L2 LINE L2 -267 3046 2758 1529 288 161 17 chr11 66613923 66614663 -82168809 - L2 LINE L2 -744 2570 1697 2219 110 0 0 chr11 66614663 66614972 -82168500 - AluSx SINE Alu -3 309 1 1529 288 161 17 chr11 66614972 66615058 -82168414 - L2 LINE L2 -1617 1697 1625 678 277 144 17 chr11 66615354 66615646 -82167826 + L2 LINE L2 2966 3294 -19 223 313 50 0 chr11 66616411 66616491 -82166981 + MIR SINE MIR 101 184 -78 1173 112 0 18 chr11 66616564 66616734 -82166738 + AluJb SINE Alu 134 300 -12 2477 57 0 0 chr11 66616736 66617032 -82166440 + AluY SINE Alu 1 296 -15 780 175 76 33 chr11 66617038 66617249 -82166223 - L1MD3 LINE L1 -49 7946 7727 206 304 157 26 chr11 66617585 66617700 -82165772 - MIR3 SINE MIR -33 175 46 2245 112 0 3 chr11 66618062 66618374 -82165098 + AluSx SINE Alu 1 311 -1 283 248 177 35 chr11 66618386 66618499 -82164973 - L2 LINE L2 -15 3257 3129 706 215 140 0 chr11 66618549 66618735 -82164737 - MIR SINE MIR -44 218 7 601 312 13 7 chr11 66618750 66618954 -82164518 + MIR SINE MIR 38 243 -19 192 283 62 18 chr11 66619038 66619151 -82164321 - L2 LINE L2 -203 3069 2952 224 244 70 23 chr11 66619833 66619919 -82163553 - L2 LINE L2 -226 3046 2957 470 257 136 7 chr11 66619938 66620078 -82163394 - MER91A DNA MER1_type -31 165 8 2402 45 7 3 chr11 66620133 66620424 -82163048 + AluY SINE Alu 1 292 -19 3110 205 26 54 chr11 66620678 66621499 -82161973 - LTR5 LTR ERVK 0 969 172 2550 47 0 0 chr11 66621505 66621804 -82161668 + AluY SINE Alu 1 299 -12 654 225 39 0 chr11 66621875 66622004 -82161468 - LTR5 LTR ERVK -835 134 1 1657 116 0 0 chr11 66622381 66622605 -82160867 - AluSq SINE Alu -89 224 1 844 166 22 0 chr11 66622605 66622744 -82160728 - AluJb SINE Alu -170 142 1 189 0 0 0 chr11 66623255 66623276 -82160196 + (T)n Simple_repeat Simple_repeat 1 21 0 376 331 22 7 chr11 66623540 66623679 -82159793 + MIR SINE MIR 81 221 -41 2369 62 0 0 chr11 66625503 66625795 -82157677 - AluY SINE Alu -19 292 1 2340 93 0 0 chr11 66625859 66626160 -82157312 - AluSg SINE Alu -9 301 1 686 281 8 51 chr11 66626314 66626549 -82156923 + L2 LINE L2 3089 3313 0 1232 146 25 115 chr11 66626727 66627072 -82156400 - AluYb8 SINE Alu 0 318 1 625 178 71 53 chr11 66627109 66627278 -82156194 + MLT1A2 LTR MaLR 1 172 -218 1928 141 10 3 chr11 66627284 66627582 -82155890 + AluJb SINE Alu 1 300 -12 864 111 7 15 chr11 66627582 66627717 -82155755 + AluJo SINE Alu 1 134 -178 224 146 0 55 chr11 66627721 66627776 -82155696 + (TAAAAA)n Simple_repeat Simple_repeat 2 53 0 2181 122 3 0 chr11 66627782 66628086 -82155386 + AluSx SINE Alu 1 305 -7 826 177 17 7 chr11 66628129 66628298 -82155174 + MLT1A2 LTR MaLR 187 346 -28 2035 128 3 7 chr11 66628506 66628802 -82154670 - AluJo SINE Alu -17 295 1 181 350 38 45 chr11 66628824 66628981 -82154491 + L2 LINE L2 3095 3250 -22 2055 108 0 44 chr11 66629548 66629864 -82153608 - AluSx SINE Alu -10 302 1 465 291 54 7 chr11 66630093 66630241 -82153231 - L2 LINE L2 0 3313 3159 2131 76 14 17 chr11 66630641 66630965 -82152507 - AluSx SINE Alu 0 312 1 1922 142 0 0 chr11 66630967 66631248 -82152224 - AluSx SINE Alu -18 294 14 322 242 185 13 chr11 66631367 66631524 -82151948 - MIR3 SINE MIR -17 191 8 345 311 69 23 chr11 66631982 66632157 -82151315 + MIR SINE MIR 15 200 -62 287 228 63 0 chr11 66632306 66632385 -82151087 + MIR SINE MIR 73 156 -106 1905 176 0 0 chr11 66632392 66632704 -82150768 + AluJo SINE Alu 1 312 0 296 260 150 16 chr11 66632924 66633051 -82150421 + MER117 DNA MER1_type 1 144 -53 225 65 0 0 chr11 66633669 66633700 -82149772 + (TG)n Simple_repeat Simple_repeat 1 31 0 207 179 0 0 chr11 66633881 66633920 -82149552 + GA-rich Low_complexity Low_complexity 1 39 0 251 243 118 105 chr11 66633966 66633998 -82149474 - MIR3 SINE MIR -42 166 136 1611 237 69 9 chr11 66633998 66634348 -82149124 - MLT1A2 LTR MaLR 0 374 4 251 243 118 105 chr11 66634348 66634467 -82149005 - MIR3 SINE MIR -72 136 13 208 286 13 26 chr11 66634570 66634647 -82148825 + L2 LINE L2 3233 3308 -5 2163 110 0 7 chr11 66634854 66635155 -82148317 - AluSx SINE Alu -13 299 1 2221 82 27 0 chr11 66635157 66635449 -82148023 - AluSx SINE Alu -12 300 1 200 154 330 22 chr11 66635449 66635540 -82147932 + MIR SINE MIR 139 257 -5 203 146 24 0 chr11 66635605 66635646 -82147826 + CT-rich Low_complexity Low_complexity 1 42 0 2061 141 3 3 chr11 66635646 66635958 -82147514 - AluSx SINE Alu 0 312 1 2137 112 0 3 chr11 66635958 66636254 -82147218 - AluSg SINE Alu -15 295 1 1238 259 102 18 chr11 66636355 66636796 -82146676 - MLT1K LTR MaLR -81 507 30 1927 127 31 0 chr11 66637168 66637459 -82146013 + AluSg SINE Alu 1 300 -10 451 279 76 19 chr11 66637821 66637979 -82145493 + MIR SINE MIR 47 213 -49 303 297 166 7 chr11 66638272 66638417 -82145055 - MIR3 SINE MIR -20 188 21 286 299 60 17 chr11 66638621 66638738 -82144734 + MIR3 SINE MIR 40 161 -47 1893 136 0 20 chr11 66638742 66638850 -82144622 + AluJb SINE Alu 12 121 -191 225 0 0 0 chr11 66638850 66638875 -82144597 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 1893 136 0 20 chr11 66638875 66639061 -82144411 + AluJb SINE Alu 121 300 -12 2118 102 0 40 chr11 66639291 66639595 -82143877 - AluSx SINE Alu -20 292 1 636 322 48 34 chr11 66639782 66640077 -82143395 - L2 LINE L2 -1 3312 3014 507 230 58 107 chr11 66640205 66640355 -82143117 - L2 LINE L2 -465 2849 2693 1486 142 138 8 chr11 66640355 66640615 -82142857 + AluSx SINE Alu 1 294 -18 2160 124 0 6 chr11 66640617 66640931 -82142541 + AluSx SINE Alu 1 312 0 507 230 58 107 chr11 66640931 66640948 -82142524 - L2 LINE L2 -622 2692 2676 2169 119 0 0 chr11 66640948 66641243 -82142229 + AluSx SINE Alu 1 295 -17 507 230 58 107 chr11 66641243 66641332 -82142140 - L2 LINE L2 -638 2676 2602 189 212 0 0 chr11 66641577 66641610 -82141862 + L3 LINE CR1 65 97 -1480 2196 105 7 0 chr11 66641839 66642134 -82141338 + AluSx SINE Alu 1 297 -15 678 181 0 35 chr11 66642424 66642540 -82140932 + AluJb SINE Alu 1 112 -200 800 250 128 12 chr11 66642542 66642862 -82140610 + MLT1K LTR MaLR 138 494 -94 1944 116 6 50 chr11 66643174 66643492 -82139980 - AluSx SINE Alu -8 304 1 1147 145 0 6 chr11 66643519 66643698 -82139774 + AluJb SINE Alu 121 298 -14 207 0 0 0 chr11 66643698 66643721 -82139751 + (CA)n Simple_repeat Simple_repeat 2 24 0 372 59 0 0 chr11 66643748 66643799 -82139673 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 1739 178 0 3 chr11 66644002 66644324 -82139148 + AluJb SINE Alu 1 321 0 23 0 0 0 chr11 66644522 66644545 -82138927 + AT_rich Low_complexity Low_complexity 1 23 0 2163 112 16 0 chr11 66644682 66644986 -82138486 + AluSq SINE Alu 1 309 -4 1739 138 51 7 chr11 66645105 66645380 -82138092 + AluJo SINE Alu 1 287 -25 2441 57 0 3 chr11 66645405 66645705 -82137767 + AluY SINE Alu 1 299 -12 27 0 0 0 chr11 66645758 66645785 -82137687 + AT_rich Low_complexity Low_complexity 1 27 0 2093 125 3 0 chr11 66645899 66646196 -82137276 + AluSx SINE Alu 1 298 -14 388 248 155 19 chr11 66646247 66646408 -82137064 + MER112 DNA MER1_type 4 186 -74 317 137 68 0 chr11 66646410 66646483 -82136989 - MER116 DNA Mariner -1 79 2 834 216 116 0 chr11 66646676 66646866 -82136606 - AluJb SINE Alu -16 296 85 360 146 0 0 chr11 66646866 66646921 -82136551 - AluSg/x SINE Alu -52 248 194 935 131 14 7 chr11 66646922 66647067 -82136405 - AluJo SINE Alu -166 146 1 325 280 91 6 chr11 66647077 66647258 -82136214 - L1ME LINE L1 -303 5818 5617 2399 62 7 3 chr11 66647271 66647577 -82135895 - AluSg SINE Alu -3 307 1 234 333 102 34 chr11 66647812 66647959 -82135513 + MIR SINE MIR 64 220 -42 354 131 16 0 chr11 66648167 66648228 -82135244 - L2 LINE L2 0 3313 3252 200 176 0 0 chr11 66648230 66648264 -82135208 + MIR SINE MIR 113 146 -62 910 199 0 0 chr11 66649655 66649821 -82133651 - AluJo/FRAM SINE Alu -19 293 128 2197 92 0 13 chr11 66649821 66650126 -82133346 - AluSq SINE Alu -12 301 1 291 247 165 0 chr11 66650164 66650261 -82133211 - L2 LINE L2 -1 3312 3200 866 119 0 0 chr11 66650348 66650466 -82133006 + FLAM_C SINE Alu 1 118 -15 491 239 206 12 chr11 66650588 66650633 -82132839 - L2 LINE L2 -232 3081 3046 2051 128 7 3 chr11 66650633 66650930 -82132542 + AluSq SINE Alu 1 298 -15 491 239 206 12 chr11 66650930 66651157 -82132315 - L2 LINE L2 -267 3046 2758 1535 288 161 17 chr11 66651157 66651897 -82131575 - L2 LINE L2 -744 2570 1697 2155 113 0 3 chr11 66651897 66652207 -82131265 - AluSx SINE Alu -3 309 1 1535 288 161 17 chr11 66652207 66652293 -82131179 - L2 LINE L2 -1617 1697 1625 678 277 144 17 chr11 66652589 66652881 -82130591 + L2 LINE L2 2966 3294 -19 223 313 50 0 chr11 66653646 66653726 -82129746 + MIR SINE MIR 101 184 -78 1181 111 0 18 chr11 66653799 66653970 -82129502 + AluJb SINE Alu 134 301 -11 2477 57 0 0 chr11 66653972 66654268 -82129204 + AluY SINE Alu 1 296 -15 780 175 76 33 chr11 66654274 66654485 -82128987 - L1MD3 LINE L1 -49 7946 7727 206 304 157 26 chr11 66654821 66654936 -82128536 - MIR3 SINE MIR -33 175 46 2253 112 0 3 chr11 66655298 66655611 -82127861 + AluSx SINE Alu 1 312 0 283 248 177 35 chr11 66655623 66655736 -82127736 - L2 LINE L2 -15 3257 3129 706 215 140 0 chr11 66655786 66655972 -82127500 - MIR SINE MIR -44 218 7 601 312 13 7 chr11 66655987 66656191 -82127281 + MIR SINE MIR 38 243 -19 192 283 62 18 chr11 66656275 66656388 -82127084 - L2 LINE L2 -203 3069 2952 224 244 70 23 chr11 66657070 66657156 -82126316 - L2 LINE L2 -226 3046 2957 470 257 136 7 chr11 66657175 66657315 -82126157 - MER91A DNA MER1_type -31 165 8 2402 45 7 3 chr11 66657370 66657661 -82125811 + AluY SINE Alu 1 292 -19 3147 198 32 58 chr11 66657915 66658735 -82124737 - LTR5 LTR ERVK 0 969 172 900 203 23 134 chr11 66658636 66658741 -82124731 - LTR5 LTR ERVK -697 272 157 2677 47 0 0 chr11 66658741 66659041 -82124431 + AluY SINE Alu 1 300 -11 900 203 23 134 chr11 66659041 66659241 -82124231 - LTR5 LTR ERVK -812 157 1 1732 116 0 0 chr11 66659618 66659842 -82123630 - AluSq SINE Alu -89 224 1 827 166 22 0 chr11 66659842 66659981 -82123491 - AluJb SINE Alu -170 142 1 2330 88 0 23 chr11 66660492 66660799 -82122673 - AluSg1 SINE Alu -9 300 1 2037 130 3 0 chr11 66661276 66661560 -82121912 - AluSx SINE Alu -22 290 6 315 195 160 49 chr11 66661653 66661794 -82121678 - MIR SINE MIR -57 151 16 788 137 8 15 chr11 66663256 66663387 -82120085 + FLAM_C SINE Alu 2 131 -12 180 0 0 0 chr11 66663402 66663422 -82120050 + (A)n Simple_repeat Simple_repeat 1 20 0 559 504 82 0 chr11 66663527 66663809 -82119663 + AluYa8 SINE Alu 2 306 -4 337 268 183 42 chr11 66663832 66663974 -82119498 + MIR SINE MIR 3 164 -98 2810 74 8 0 chr11 66664040 66664391 -82119081 + THE1A LTR MaLR 1 354 -1 864 153 8 0 chr11 66664420 66664551 -82118921 + FLAM_C SINE Alu 2 133 0 2408 53 0 0 chr11 66664586 66664893 -82118579 - AluY SINE Alu 0 307 1 254 227 0 0 chr11 66664961 66665005 -82118467 + MIR SINE MIR 216 259 -3 2315 98 7 0 chr11 66666539 66666834 -82116638 + AluSx SINE Alu 1 297 -15 2097 129 0 22 chr11 66666838 66667155 -82116317 + AluSq SINE Alu 3 312 -1 808 178 89 24 chr11 66667368 66667537 -82115935 + MER5A DNA MER1_type 7 186 -3 192 279 16 33 chr11 66667600 66667661 -82115811 - L2 LINE L2 0 3272 3213 2420 92 0 0 chr11 66667680 66667984 -82115488 + AluY SINE Alu 1 304 -7 332 302 9 28 chr11 66668056 66668162 -82115310 - L2 LINE L2 -189 3083 2980 1605 180 28 3 chr11 66668205 66668489 -82114983 - AluJo SINE Alu -21 291 1 2094 117 6 43 chr11 66668663 66668988 -82114484 - AluSq SINE Alu 0 313 1 971 184 55 20 chr11 66669254 66669455 -82114017 + L1ME LINE L1 5376 5583 -583 2291 100 0 13 chr11 66669455 66669764 -82113708 - AluSg SINE Alu -5 305 1 2136 117 0 26 chr11 66669778 66669946 -82113526 - AluSq SINE Alu -14 299 141 2277 69 0 44 chr11 66669946 66670263 -82113209 - AluY SINE Alu -8 303 1 2136 117 0 26 chr11 66670263 66670401 -82113071 - AluSq SINE Alu -172 141 1 210 71 0 0 chr11 66670445 66670473 -82112999 + (TG)n Simple_repeat Simple_repeat 2 29 0 607 83 0 0 chr11 66670477 66670561 -82112911 - AluJb SINE Alu -37 275 192 2266 93 3 3 chr11 66671488 66671789 -82111683 - AluSx SINE Alu -11 301 1 968 113 15 0 chr11 66671789 66671922 -82111550 - AluSq/x SINE Alu -177 135 1 201 147 0 0 chr11 66672225 66672259 -82111213 + (T)n Simple_repeat Simple_repeat 1 34 0 2427 92 0 3 chr11 66672270 66672575 -82110897 + AluSc SINE Alu 1 304 -5 2102 119 0 0 chr11 66672579 66672857 -82110615 - AluSq SINE Alu -35 278 1 323 246 63 51 chr11 66672919 66673094 -82110378 + L2 LINE L2 2286 2462 -852 956 62 0 0 chr11 66673129 66673242 -82110230 + AluSg/x SINE Alu 180 292 -18 448 351 30 52 chr11 66673281 66673552 -82109920 + L2 LINE L2 2538 2802 -512 1439 281 114 52 chr11 66673554 66674087 -82109385 + L2 LINE L2 2145 2644 -669 2321 84 10 3 chr11 66674087 66674386 -82109086 - AluY SINE Alu -10 301 1 1817 154 33 0 chr11 66674387 66674660 -82108812 + AluJb SINE Alu 11 292 -20 1439 281 114 52 chr11 66674660 66675225 -82108247 + L2 LINE L2 2643 3307 -6 280 342 67 40 chr11 66675230 66675455 -82108017 + L2 LINE L2 2824 3054 -218 2272 119 6 0 chr11 66675502 66675813 -82107659 - AluSq SINE Alu 0 313 1 738 136 45 45 chr11 66675813 66675945 -82107527 - AluJo/FLAM SINE Alu -170 132 1 2247 110 13 10 chr11 66675981 66676290 -82107182 - AluSx SINE Alu -2 310 1 2241 128 0 3 chr11 66676373 66676686 -82106786 - AluSq SINE Alu -1 312 1 252 59 0 0 chr11 66676773 66676807 -82106665 + (T)n Simple_repeat Simple_repeat 1 34 0 2572 67 0 0 chr11 66676971 66677271 -82106201 - AluY SINE Alu -11 300 1 1805 156 31 0 chr11 66678060 66678348 -82105124 + AluSx SINE Alu 1 297 -15 2113 114 14 14 chr11 66678702 66678992 -82104480 + AluSx SINE Alu 1 290 -22 2177 116 0 3 chr11 66679105 66679390 -82104082 - AluSx SINE Alu -28 284 1 2164 137 0 0 chr11 66679794 66680101 -82103371 - AluSx SINE Alu -5 307 1 497 323 85 5 chr11 66680200 66680389 -82103083 - MIR SINE MIR -57 205 2 2003 156 10 0 chr11 66680863 66681164 -82102308 + AluJo SINE Alu 9 312 0 2686 39 0 3 chr11 66681165 66681474 -82101998 + AluY SINE Alu 1 308 -3 2284 119 3 0 chr11 66681476 66681786 -82101686 + AluSx SINE Alu 2 312 0 557 260 188 5 chr11 66682353 66682545 -82100927 + MIR SINE MIR 2 228 -34 22 0 0 0 chr11 66682758 66682780 -82100692 + AT_rich Low_complexity Low_complexity 1 22 0 799 162 0 22 chr11 66683832 66683968 -82099504 - FLAM_C SINE Alu 0 133 1 1950 103 92 0 chr11 66684017 66684279 -82099193 + AluSx SINE Alu 1 286 -26 1514 164 86 31 chr11 66684315 66684607 -82098865 - AluJo SINE Alu 0 312 5 289 172 104 104 chr11 66684608 66684694 -82098778 - Charlie1a DNA MER1_type -1339 1422 1334 2019 106 10 36 chr11 66684694 66684997 -82098475 + AluSq SINE Alu 1 295 -18 289 172 104 104 chr11 66684997 66685044 -82098428 - Charlie1a DNA MER1_type -1426 1335 1289 880 119 0 0 chr11 66685083 66685201 -82098271 + AluSg/x SINE Alu 136 253 -59 2038 139 13 0 chr11 66685241 66685543 -82097929 + AluSx SINE Alu 1 306 -6 1845 171 0 19 chr11 66685565 66685875 -82097597 + AluJo SINE Alu 1 304 -8 2559 69 0 0 chr11 66685878 66686182 -82097290 + AluSq SINE Alu 1 304 -9 4266 191 23 54 chr11 66686185 66686435 -82097037 - Charlie1a DNA MER1_type -1693 1068 812 2272 111 0 10 chr11 66686435 66686606 -82096866 - AluSq SINE Alu -9 304 136 2291 107 7 0 chr11 66686606 66686927 -82096545 - AluSp SINE Alu 0 313 1 2272 111 0 10 chr11 66686927 66687062 -82096410 - AluSq SINE Alu -177 136 1 4266 191 23 54 chr11 66687062 66687869 -82095603 - Charlie1a DNA MER1_type -1949 812 44 466 300 85 12 chr11 66688735 66688918 -82094554 + MIR3 SINE MIR 13 207 -1 2317 92 0 0 chr11 66689132 66689437 -82094035 - AluSc SINE Alu 0 305 1 469 196 216 13 chr11 66689647 66689800 -82093672 + MIR SINE MIR 64 247 -15 2458 87 0 0 chr11 66689943 66690243 -82093229 + AluSx SINE Alu 1 300 -12 929 255 48 12 chr11 66690257 66690460 -82093012 + MIR SINE MIR 2 196 -66 2248 94 0 23 chr11 66690460 66690759 -82092713 + AluSq SINE Alu 1 292 -21 2051 142 3 3 chr11 66690759 66691055 -82092417 + AluSx SINE Alu 1 296 -16 929 255 48 12 chr11 66691055 66691101 -82092371 + MIR SINE MIR 195 261 -1 191 302 35 95 chr11 66691076 66691161 -82092311 - L2 LINE L2 -6 3266 3188 * 2005 162 0 0 chr11 66691161 66691458 -82092014 - AluJo SINE Alu -9 303 7 191 302 35 95 chr11 66691458 66691488 -82091984 - L2 LINE L2 -84 3188 3158 482 357 49 58 chr11 66691712 66692065 -82091407 - L2 LINE L2 0 3272 2922 1987 154 7 0 chr11 66692065 66692370 -82091102 + AluJb SINE Alu 1 307 -5 482 357 49 58 chr11 66692370 66692464 -82091008 - L2 LINE L2 -350 2922 2829 2465 89 0 0 chr11 66692594 66692897 -82090575 - AluSx SINE Alu -9 303 1 625 231 145 30 chr11 66693301 66693535 -82089937 + MIR SINE MIR 1 261 -1 1969 142 0 23 chr11 66693602 66693904 -82089568 - AluJo SINE Alu -17 295 1 2327 117 10 0 chr11 66693991 66694300 -82089172 + AluSx SINE Alu 1 312 0 450 0 0 0 chr11 66694300 66694350 -82089122 + (TA)n Simple_repeat Simple_repeat 2 51 0 1070 146 6 0 chr11 66694370 66694528 -82088944 + AluSg/x SINE Alu 142 300 -10 2090 97 0 4 chr11 66694830 66695098 -82088374 + AluSx SINE Alu 35 301 -11 193 272 44 79 chr11 66695611 66695725 -82087747 + MIR3 SINE MIR 48 157 -51 2306 99 0 3 chr11 66697121 66697415 -82086057 + AluSx SINE Alu 2 294 -18 2462 42 0 3 chr11 66697571 66697881 -82085591 - AluY SINE Alu 0 309 1 1435 158 0 0 chr11 66698282 66698491 -82084981 - AluJb SINE Alu -14 298 90 318 158 146 73 chr11 66698492 66698574 -82084898 - L2 LINE L2 -4 3309 3222 203 326 74 32 chr11 66698820 66698915 -82084557 - L2 LINE L2 -31 3241 3143 1720 85 0 5 chr11 66700449 66700673 -82082799 + L1PB1 LINE L1 5928 6150 -1 316 278 20 93 chr11 66701053 66701204 -82082268 + L2 LINE L2 2916 3055 -217 2158 110 23 7 chr11 66701282 66701583 -82081889 - AluSx SINE Alu -6 306 1 2604 71 0 0 chr11 66701819 66702130 -82081342 + AluY SINE Alu 1 311 0 1583 104 9 18 chr11 66703558 66703780 -82079692 + AluSx SINE Alu 1 220 -92 460 108 0 0 chr11 66703780 66703839 -82079633 + AluSc SINE Alu 176 234 -75 180 0 0 0 chr11 66703843 66703863 -82079609 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1154 142 6 0 chr11 66703863 66704032 -82079440 + AluSg/x SINE Alu 135 304 -8 192 40 0 0 chr11 66704152 66704177 -82079295 + (TC)n Simple_repeat Simple_repeat 2 26 0 547 311 118 4 chr11 66705065 66705303 -82078169 + L3 LINE CR1 1220 1484 -93 515 335 71 0 chr11 66705584 66705766 -82077706 + MIR3 SINE MIR 5 199 -9 417 267 103 11 chr11 66705920 66706068 -82077404 + MIR3 SINE MIR 8 167 -41 1664 173 16 29 chr11 66706374 66706687 -82076785 + AluJb SINE Alu 1 309 -3 237 83 0 0 chr11 66707310 66707346 -82076126 + (CA)n Simple_repeat Simple_repeat 1 36 0 563 249 25 68 chr11 66710343 66710580 -82072892 + MIR SINE MIR 11 237 -25 439 302 15 28 chr11 66710794 66710982 -82072490 - MIR SINE MIR -56 206 16 239 307 0 27 chr11 66711641 66711716 -82071756 - L2 LINE L2 -6 3307 3235 1594 163 14 37 chr11 66711787 66712081 -82071391 + AluJo SINE Alu 7 293 -19 466 339 60 40 chr11 66713101 66713220 -82070252 - MIR SINE MIR 0 262 147 2165 124 0 0 chr11 66713220 66713518 -82069954 - AluSx SINE Alu -14 298 1 466 339 60 40 chr11 66713518 66713649 -82069823 - MIR SINE MIR -115 147 7 273 255 71 68 chr11 66713735 66713912 -82069560 + MIR SINE MIR 34 216 -46 718 127 18 0 chr11 66713966 66714076 -82069396 - AluY SINE Alu 0 311 200 1654 99 107 0 chr11 66714079 66714332 -82069140 - AluYb8 SINE Alu -38 280 1 1050 89 0 0 chr11 66714332 66714467 -82069005 - AluSq/x SINE Alu -177 135 1 1644 155 37 14 chr11 66715233 66715530 -82067942 - AluJb SINE Alu -8 304 1 399 338 187 0 chr11 66715580 66715885 -82067587 - L2 LINE L2 -1 3271 2910 342 297 30 0 chr11 66719635 66719736 -82063736 - MIR SINE MIR -72 136 33 852 189 31 6 chr11 66719839 66719998 -82063474 + FRAM SINE Alu 1 163 -13 2409 57 0 3 chr11 66720074 66720370 -82063102 - AluY SINE Alu -16 295 1 1989 134 3 10 chr11 66720454 66720759 -82062713 - AluJb SINE Alu -9 303 1 25 0 0 0 chr11 66720759 66720784 -82062688 + AT_rich Low_complexity Low_complexity 1 25 0 1514 131 33 20 chr11 66720784 66721029 -82062443 - AluJb SINE Alu -64 248 1 1880 148 7 3 chr11 66721711 66722002 -82061470 + AluJb SINE Alu 1 292 -20 213 39 0 0 chr11 66722003 66722029 -82061443 + (TA)n Simple_repeat Simple_repeat 1 26 0 2264 97 0 0 chr11 66722045 66722344 -82061128 + AluSg SINE Alu 1 299 -11 890 148 7 19 chr11 66722833 66722988 -82060484 - AluSg/x SINE Alu 0 309 157 407 318 0 40 chr11 66723083 66723234 -82060238 + MIR SINE MIR 117 261 -1 1369 126 118 48 chr11 66723246 66723516 -82059956 - AluJo SINE Alu -21 291 3 2266 96 0 10 chr11 66723612 66723915 -82059557 - AluY SINE Alu -11 300 1 852 184 95 0 chr11 66724171 66724339 -82059133 + AluSg/x SINE Alu 122 305 -7 1728 121 110 4 chr11 66724343 66724615 -82058857 + AluSx SINE Alu 1 301 -11 1339 183 28 10 chr11 66724686 66724975 -82058497 - MER58B DNA MER1_type 0 341 48 217 362 80 12 chr11 66725156 66725319 -82058153 + MIR SINE MIR 49 222 -40 821 159 40 0 chr11 66727152 66727278 -82056194 - FLAM_C SINE Alu -2 131 1 189 273 100 73 chr11 66727498 66727608 -82055864 + MIR3 SINE MIR 44 156 -52 199 291 164 57 chr11 66727937 66728236 -82055236 + L2 LINE L2 2937 3267 -5 235 288 32 88 chr11 66730044 66730080 -82053392 - MIR SINE MIR -58 150 114 2274 93 7 0 chr11 66730080 66730381 -82053091 + AluSq SINE Alu 1 303 -10 235 288 32 88 chr11 66730381 66730469 -82053003 - MIR SINE MIR -94 114 33 269 264 14 14 chr11 66731323 66731395 -82052077 + MIR3 SINE MIR 87 158 -50 241 229 10 125 chr11 66734282 66734378 -82049094 + MIR SINE MIR 60 144 -118 1073 95 7 0 chr11 66734378 66734390 -82049082 - AluSq/x SINE Alu -164 149 139 2319 106 3 0 chr11 66734390 66734701 -82048771 - AluSx SINE Alu 0 312 1 1073 95 7 0 chr11 66734701 66734836 -82048636 - AluSq/x SINE Alu -174 139 1 310 257 27 0 chr11 66734836 66734910 -82048562 + MIR SINE MIR 147 222 -40 423 331 89 53 chr11 66737730 66737822 -82045650 + L1ME4a LINE L1 5764 5851 -270 2253 94 0 0 chr11 66737822 66738100 -82045372 + AluSg SINE Alu 5 285 -25 441 36 0 0 chr11 66738100 66738155 -82045317 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 2253 94 0 0 chr11 66738155 66738175 -82045297 + AluSg SINE Alu 284 303 -7 423 331 89 53 chr11 66738175 66738363 -82045109 + L1ME4a LINE L1 5851 6054 -67 2229 103 3 0 chr11 66738410 66738712 -82044760 - AluSg SINE Alu -7 303 1 2139 112 0 0 chr11 66738713 66739008 -82044464 - AluSx SINE Alu -12 300 6 180 325 12 24 chr11 66740080 66740163 -82043309 + MIR3 SINE MIR 83 164 -44 1731 172 0 25 chr11 66741490 66741804 -82041668 + AluJo SINE Alu 1 306 -6 193 240 67 13 chr11 66742142 66742217 -82041255 + MIR SINE MIR 56 134 -74 392 279 209 40 chr11 66742530 66742811 -82040661 - L2 LINE L2 -43 3270 2925 1866 165 0 20 chr11 66742811 66743114 -82040358 + AluSx SINE Alu 1 297 -15 392 279 209 40 chr11 66743114 66743158 -82040314 - L2 LINE L2 -388 2925 2890 256 342 70 0 chr11 66743558 66743716 -82039756 - L2 LINE L2 -254 3018 2850 2121 103 31 0 chr11 66743771 66744061 -82039411 + AluSx SINE Alu 1 299 -13 356 220 20 30 chr11 66745614 66745714 -82037758 + MIR3 SINE MIR 65 163 -45 1607 93 13 13 chr11 66745725 66745951 -82037521 + AluSg/x SINE Alu 71 296 -16 233 254 95 0 chr11 66746630 66746693 -82036779 - MIR SINE MIR -117 145 77 240 211 70 0 chr11 66750397 66750454 -82033018 - MIR SINE MIR -123 139 79 1841 157 7 0 chr11 66750656 66750950 -82032522 - AluJb SINE Alu -16 296 1 257 377 25 37 chr11 66751924 66752245 -82031227 + L2 LINE L2 2848 3164 -108 1909 111 0 102 chr11 66752627 66752970 -82030502 - AluSg1 SINE Alu -1 308 1 1962 137 10 16 chr11 66753005 66753312 -82030160 - AluJb SINE Alu -3 309 5 185 323 110 24 chr11 66753830 66753957 -82029515 + L2 LINE L2 3169 3306 -7 2155 104 16 7 chr11 66755664 66755972 -82027500 - AluSx SINE Alu -1 311 1 442 299 14 35 chr11 66755982 66756126 -82027346 - L1MC4 LINE L1 0 8042 7902 1092 119 0 0 chr11 66756135 66756312 -82027160 + (TA)n Simple_repeat Simple_repeat 1 177 0 2247 61 32 0 chr11 66756312 66756591 -82026881 - AluSp SINE Alu -25 288 1 1123 234 111 39 chr11 66756596 66757028 -82026444 - L1MC4 LINE L1 -92 7950 7488 309 288 167 2 chr11 66757155 66757311 -82026161 - MIR SINE MIR -44 218 2 846 203 151 10 chr11 66757358 66757550 -82025922 - MER20 DNA MER1_type 0 219 1 213 39 0 0 chr11 66757556 66757582 -82025890 + (TG)n Simple_repeat Simple_repeat 2 27 0 1393 190 24 22 chr11 66757740 66758070 -82025402 - MLT1E3 LTR MaLR 0 614 297 1652 152 4 4 chr11 66758070 66758326 -82025146 - AluJb SINE Alu -47 265 10 270 229 16 0 chr11 66758456 66758517 -82024955 - MLT1E1 LTR MaLR -587 67 6 187 293 57 57 chr11 66759837 66759883 -82023589 + MIR3 SINE MIR 8 53 -155 2174 84 0 17 chr11 66759883 66760179 -82023293 + AluSc SINE Alu 1 291 -18 187 293 57 57 chr11 66760179 66760272 -82023200 + MIR3 SINE MIR 52 147 -61 1993 107 23 33 chr11 66760675 66760975 -82022497 + AluSq SINE Alu 1 297 -16 2050 125 27 0 chr11 66761496 66761791 -82021681 - AluSx SINE Alu -9 303 1 189 0 0 0 chr11 66762761 66762782 -82020690 + (A)n Simple_repeat Simple_repeat 1 21 0 241 195 24 49 chr11 66764414 66764496 -82018976 + (CCCCG)n Simple_repeat Simple_repeat 1 80 0 374 304 77 11 chr11 66766244 66766425 -82017047 - MIR3 SINE MIR 0 208 16 2200 106 0 7 chr11 66767401 66767703 -82015769 - AluSx SINE Alu -12 300 1 2350 88 7 0 chr11 66768643 66768949 -82014523 - AluSg SINE Alu -2 308 1 2360 57 7 3 chr11 66768996 66769292 -82014180 + AluY SINE Alu 1 297 -14 1937 108 0 0 chr11 66770497 66770757 -82012715 - AluSx SINE Alu -16 296 37 631 200 9 0 chr11 66770759 66770869 -82012603 - AluJo SINE Alu -84 228 118 436 342 43 27 chr11 66772449 66772636 -82010836 - MIR SINE MIR -29 233 44 260 286 143 34 chr11 66773276 66773451 -82010021 + MIR SINE MIR 51 244 -18 364 263 65 89 chr11 66773967 66774156 -82009316 - MIR SINE MIR -62 146 6 767 278 105 3 chr11 66774250 66774556 -82008916 - L1ME1 LINE L1 -100 6066 5730 2144 91 3 14 chr11 66775249 66775535 -82007937 - AluSq SINE Alu -30 283 1 2202 120 0 0 chr11 66775535 66775835 -82007637 - AluSx SINE Alu -12 300 1 837 201 31 42 chr11 66775878 66776137 -82007335 - L1MB3 LINE L1 -42 6141 5886 4525 114 16 39 chr11 66776152 66776267 -82007205 - L1PA15 LINE L1 -21 6144 6028 1705 148 62 7 chr11 66776267 66776558 -82006914 - AluJo SINE Alu -5 307 1 4525 114 16 39 chr11 66776558 66777260 -82006212 - L1PA15 LINE L1 -137 6028 5346 202 318 73 20 chr11 66779114 66779246 -82004226 - MIR SINE MIR -66 142 18 1228 119 119 0 chr11 66780080 66780273 -82003199 - AluJb SINE Alu -11 301 86 1741 138 24 20 chr11 66780768 66781066 -82002406 + AluJo SINE Alu 3 301 -11 215 330 102 0 chr11 66781077 66781165 -82002307 - MIR3 SINE MIR -15 193 97 1166 208 37 0 chr11 66781191 66781407 -82002065 - MER58A DNA MER1_type 0 224 1 1175 117 0 0 chr11 66781774 66781937 -82001535 - AluSg/x SINE Alu -15 297 135 2226 107 0 3 chr11 66781937 66782236 -82001236 - AluSg SINE Alu -12 298 1 1772 132 66 0 chr11 66782236 66782523 -82000949 - AluSq SINE Alu -7 306 1 2090 113 0 0 chr11 66783432 66783714 -81999758 - AluSx SINE Alu -6 306 25 251 293 106 16 chr11 66783724 66783847 -81999625 - L2 LINE L2 -20 3252 3119 391 277 7 71 chr11 66784586 66784727 -81998745 + L2 LINE L2 2921 3052 -261 898 145 0 0 chr11 66784731 66784869 -81998603 - AluJb SINE Alu -7 305 168 2147 86 4 0 chr11 66784883 66785161 -81998311 - AluSg SINE Alu -31 279 1 268 303 16 41 chr11 66785329 66785451 -81998021 + MIR SINE MIR 16 134 -128 292 253 95 0 chr11 66785480 66785575 -81997897 + MIR SINE MIR 121 224 -38 339 257 7 92 chr11 66785762 66785801 -81997671 + MIR3 SINE MIR 63 104 -104 2059 221 5 19 chr11 66785801 66786163 -81997309 + MLT2D LTR ERVL 5 371 -43 2229 95 0 46 chr11 66786163 66786310 -81997162 + AluSq SINE Alu 1 153 -160 2133 69 30 53 chr11 66786310 66786613 -81996859 + AluY SINE Alu 1 296 -15 2229 95 0 46 chr11 66786613 66786790 -81996682 + AluSq SINE Alu 153 310 -3 2059 221 5 19 chr11 66786790 66786802 -81996670 + MLT2D LTR ERVL 371 382 -32 279 0 0 0 chr11 66786802 66786833 -81996639 + (CA)n Simple_repeat Simple_repeat 1 31 0 2059 221 5 19 chr11 66786833 66786873 -81996599 + MLT2D LTR ERVL 382 414 0 339 257 7 92 chr11 66786873 66786985 -81996487 + MIR3 SINE MIR 104 201 -7 376 331 22 7 chr11 66787927 66788066 -81995406 + MIR SINE MIR 81 221 -41 2377 58 0 0 chr11 66789891 66790183 -81993289 - AluY SINE Alu -19 292 1 1871 157 13 0 chr11 66790184 66790484 -81992988 - AluJo SINE Alu 0 312 9 484 328 79 0 chr11 66790963 66791152 -81992320 + MIR SINE MIR 2 205 -57 2069 140 0 0 chr11 66791251 66791558 -81991914 + AluSx SINE Alu 1 307 -5 2148 104 10 7 chr11 66791962 66792260 -81991212 + AluSq SINE Alu 1 299 -14 1937 108 0 0 chr11 66793466 66793726 -81989746 - AluSx SINE Alu -16 296 37 631 200 9 0 chr11 66793728 66793838 -81989634 - AluJo SINE Alu -84 228 118 436 342 43 27 chr11 66795418 66795605 -81987867 - MIR SINE MIR -29 233 44 260 286 143 34 chr11 66796245 66796420 -81987052 + MIR SINE MIR 51 244 -18 364 263 65 89 chr11 66796936 66797125 -81986347 - MIR SINE MIR -62 146 6 767 278 105 3 chr11 66797219 66797525 -81985947 - L1ME1 LINE L1 -100 6066 5730 2043 105 3 14 chr11 66798218 66798504 -81984968 - AluSq SINE Alu -30 283 1 2178 120 0 0 chr11 66798505 66798804 -81984668 - AluSx SINE Alu -13 299 1 832 205 34 41 chr11 66798847 66799115 -81984357 - L1MB3 LINE L1 -42 6141 5876 4480 114 16 40 chr11 66799123 66799239 -81984233 - L1PA15 LINE L1 -21 6144 6027 1762 138 62 7 chr11 66799239 66799530 -81983942 - AluJo SINE Alu -5 307 1 4480 114 16 40 chr11 66799530 66800232 -81983240 - L1PA15 LINE L1 -138 6027 5346 202 318 73 20 chr11 66802086 66802218 -81981254 - MIR SINE MIR -66 142 18 1228 119 119 0 chr11 66803051 66803244 -81980228 - AluJb SINE Alu -11 301 86 1741 138 24 20 chr11 66803739 66804037 -81979435 + AluJo SINE Alu 3 301 -11 215 330 102 0 chr11 66804048 66804136 -81979336 - MIR3 SINE MIR -15 193 97 1166 208 37 0 chr11 66804162 66804378 -81979094 - MER58A DNA MER1_type 0 224 1 1071 146 0 6 chr11 66804742 66804907 -81978565 - AluSg/x SINE Alu -14 298 135 2014 124 7 10 chr11 66804907 66805206 -81978266 - AluSg SINE Alu -12 298 1 1782 129 63 0 chr11 66805207 66805493 -81977979 - AluSq SINE Alu -9 304 1 2090 113 0 0 chr11 66806402 66806684 -81976788 - AluSx SINE Alu -6 306 25 251 293 106 16 chr11 66806694 66806817 -81976655 - L2 LINE L2 -20 3252 3119 2027 97 7 32 chr11 66807458 66807766 -81975706 + AluSx SINE Alu 1 300 -12 831 97 0 76 chr11 66807774 66807918 -81975554 + FLAM_C SINE Alu 1 133 0 2335 87 7 0 chr11 66808497 66808807 -81974665 - AluSq SINE Alu -1 312 1 195 206 82 82 chr11 66809743 66809816 -81973656 + MIR3 SINE MIR 1 73 -135 936 183 14 7 chr11 66816103 66816501 -81966971 - L1MB3 LINE L1 -470 5714 5198 2093 109 3 0 chr11 66816501 66816812 -81966660 - AluSx SINE Alu 0 312 1 1681 165 13 23 chr11 66816812 66817121 -81966351 - AluJo SINE Alu -6 306 1 207 353 0 0 chr11 66817124 66817192 -81966280 + L2 LINE L2 2667 2734 -580 301 263 94 23 chr11 66817254 66817425 -81966047 + L2 LINE L2 1451 1633 -1681 219 272 12 37 chr11 66817484 66817499 -81965973 + L2 LINE L2 1994 2008 -1306 1547 123 9 0 chr11 66817499 66817726 -81965746 - AluSx SINE Alu -83 229 1 219 272 12 37 chr11 66817726 66817791 -81965681 + L2 LINE L2 2008 2072 -1242 183 156 0 0 chr11 66818302 66818334 -81965138 + GA-rich Low_complexity Low_complexity 3 34 0 2177 118 3 0 chr11 66818426 66818732 -81964740 - AluSx SINE Alu -5 307 1 1795 170 0 20 chr11 66818763 66819063 -81964409 - AluJb SINE Alu -18 294 1 740 224 26 0 chr11 66819111 66819267 -81964205 + AluJb SINE Alu 137 296 -16 243 221 132 15 chr11 66820767 66820835 -81962637 + MIR SINE MIR 115 190 -72 1279 127 148 4 chr11 66820963 66821078 -81962394 + AluJo SINE Alu 18 115 -197 2170 72 3 26 chr11 66821078 66821384 -81962088 + AluSg SINE Alu 1 299 -11 1279 127 148 4 chr11 66821384 66821512 -81961960 + AluJo SINE Alu 115 296 -16 212 269 19 0 chr11 66821540 66821592 -81961880 + MER5A DNA MER1_type 136 188 -1 777 188 0 0 chr11 66821594 66821727 -81961745 + FLAM_C SINE Alu 1 133 0 538 174 124 8 chr11 66821810 66821931 -81961541 - AluJb SINE Alu -10 302 168 1208 183 78 81 chr11 66822158 66822360 -81961112 + MER58B DNA MER1_type 21 223 -2197 2300 92 0 3 chr11 66822360 66822663 -81960809 + AluSq SINE Alu 1 302 -11 1208 183 78 81 chr11 66822663 66822782 -81960690 + MER58B DNA MER1_type 223 341 0 858 126 0 0 chr11 66822938 66823057 -81960415 + AluSp SINE Alu 1 119 -194 1127 216 84 80 chr11 66823057 66823073 -81960399 + LTR37B LTR ERV1 4 18 -450 2461 67 3 3 chr11 66823073 66823386 -81960086 + AluSp SINE Alu 1 313 0 1127 216 84 80 chr11 66823386 66823666 -81959806 + LTR37B LTR ERV1 18 295 -173 2163 108 20 7 chr11 66823666 66823972 -81959500 - AluSx SINE Alu -2 310 1 1127 216 84 80 chr11 66823972 66824063 -81959409 + LTR37B LTR ERV1 295 397 -71 1548 139 38 69 chr11 66824063 66824380 -81959092 - AluJb SINE Alu -5 307 1 1127 216 84 80 chr11 66824380 66824453 -81959019 + LTR37B LTR ERV1 397 468 0 318 356 75 56 chr11 66824624 66824712 -81958760 + L1MC4 LINE L1 1978 2063 -6259 2253 94 0 10 chr11 66824712 66824884 -81958588 - AluSp SINE Alu -8 305 136 2251 98 3 0 chr11 66824884 66825189 -81958283 - AluSg SINE Alu -4 306 1 2253 94 0 10 chr11 66825189 66825324 -81958148 - AluSp SINE Alu -177 136 1 318 356 75 56 chr11 66825324 66825376 -81958096 + L1MC4 LINE L1 2063 2113 -6209 1884 147 0 3 chr11 66825376 66825669 -81957803 + AluSx SINE Alu 6 297 -15 318 356 75 56 chr11 66825669 66825711 -81957761 + L1MC4 LINE L1 2113 6984 -1338 1440 157 49 49 chr11 66826091 66826285 -81957187 - AluJo SINE Alu -7 305 109 2196 86 17 0 chr11 66826285 66826577 -81956895 + AluSp SINE Alu 1 297 -16 1440 157 49 49 chr11 66826577 66826687 -81956785 - AluJo SINE Alu -202 110 1 184 333 65 0 chr11 66826784 66826877 -81956595 + MIR SINE MIR 52 150 -112 237 323 21 0 chr11 66827169 66827262 -81956210 + MIR SINE MIR 49 143 -65 187 312 0 65 chr11 66828781 66828874 -81954598 + MIR SINE MIR 110 196 -66 207 340 31 10 chr11 66828921 66829018 -81954454 - MIR3 SINE MIR 0 208 110 258 103 0 0 chr11 66829737 66829776 -81953696 + tRNA-Cys-TGC tRNA tRNA 6 44 -31 241 404 9 0 chr11 66831191 66831300 -81952172 - MIR SINE MIR -62 146 37 615 242 0 0 chr11 66831618 66831742 -81951730 - L2 LINE L2 -1 3312 3189 24 0 0 0 chr11 66832593 66832617 -81950855 + GC_rich Low_complexity Low_complexity 1 24 0 320 354 101 24 chr11 66833688 66833861 -81949611 - L2 LINE L2 -108 3164 3006 2255 108 3 0 chr11 66833861 66834168 -81949304 + AluSx SINE Alu 1 308 -4 320 354 101 24 chr11 66834168 66834467 -81949005 - L2 LINE L2 -266 3006 2655 191 236 167 86 chr11 66834589 66834667 -81948805 + L2 LINE L2 3040 3110 -203 1486 140 85 52 chr11 66834667 66834939 -81948533 - AluJb SINE Alu -31 281 1 191 236 167 86 chr11 66834939 66835034 -81948438 + L2 LINE L2 3110 3227 -86 2201 98 0 10 chr11 66835183 66835480 -81947992 - AluSx SINE Alu -18 294 1 893 295 182 0 chr11 66835481 66835898 -81947574 + L2 LINE L2 2820 3312 -1 183 271 17 0 chr11 66835919 66835978 -81947494 - L2 LINE L2 -631 2683 2624 1028 156 9 49 chr11 66835985 66836210 -81947262 + AluJo SINE Alu 83 298 -14 2540 34 0 0 chr11 66836433 66836731 -81946741 + AluY SINE Alu 1 298 -13 2192 95 3 0 chr11 66839320 66839615 -81943857 - AluSx SINE Alu -16 296 1 1721 167 10 10 chr11 66840206 66840512 -81942960 + AluJb SINE Alu 1 306 -6 199 318 135 0 chr11 66840750 66840898 -81942574 + L2 LINE L2 2129 2296 -1018 2115 127 0 0 chr11 66841205 66841505 -81941967 - AluSq SINE Alu -12 301 2 2322 82 3 3 chr11 66841538 66841841 -81941631 - AluSp SINE Alu -10 303 1 1065 162 0 0 chr11 66841855 66842028 -81941444 - AluJb SINE Alu -3 309 137 842 159 40 35 chr11 66842046 66842247 -81941225 + L1MB4 LINE L1 5627 5828 -352 1902 102 0 0 chr11 66842248 66842504 -81940968 + AluSq SINE Alu 1 256 -57 387 214 48 10 chr11 66842851 66842954 -81940518 + LTR67 LTR ERVL 448 554 -3 779 213 91 54 chr11 66843204 66843376 -81940096 + MIR SINE MIR 20 203 -59 2345 81 3 3 chr11 66843376 66843685 -81939787 + AluSq SINE Alu 1 309 -4 779 213 91 54 chr11 66843685 66843733 -81939739 + MIR SINE MIR 203 248 -14 278 191 22 90 chr11 66844937 66845026 -81938446 - MER53 DNA DNA 0 189 107 860 100 8 1 chr11 66845028 66845279 -81938193 + AluSg SINE Alu 21 305 -5 287 246 0 0 chr11 66845291 66845356 -81938116 - MER53 DNA DNA -43 146 82 582 172 278 6 chr11 66845363 66845379 -81938093 + MER46A DNA MER2_type 22 32 -2699 2485 62 0 3 chr11 66845379 66845686 -81937786 + AluY SINE Alu 1 306 -5 582 172 278 6 chr11 66845686 66845838 -81937634 + MER46A DNA MER2_type 32 236 0 1847 140 7 23 chr11 66845839 66846146 -81937326 + AluJb SINE Alu 3 304 -8 338 169 0 0 chr11 66846146 66846205 -81937267 + MER53 DNA DNA 131 189 0 1883 151 13 0 chr11 66847360 66847659 -81935813 - AluJo SINE Alu -9 303 1 925 174 51 0 chr11 66847688 66847866 -81935606 - MER53 DNA DNA 0 189 3 207 0 0 0 chr11 66848602 66848625 -81934847 + (GA)n Simple_repeat Simple_repeat 1 23 0 922 141 0 0 chr11 66848996 66849124 -81934348 - FLAM_C SINE Alu -5 128 1 204 229 0 108 chr11 66849136 66849219 -81934253 + L2 LINE L2 3154 3227 -86 2201 98 0 10 chr11 66849368 66849665 -81933807 - AluSx SINE Alu -18 294 1 893 295 182 0 chr11 66849666 66850083 -81933389 + L2 LINE L2 2820 3312 -1 183 271 17 0 chr11 66850104 66850163 -81933309 - L2 LINE L2 -631 2683 2624 1028 156 9 49 chr11 66850170 66850395 -81933077 + AluJo SINE Alu 83 298 -14 2522 34 0 0 chr11 66850618 66850914 -81932558 + AluY SINE Alu 1 296 -15 2192 95 3 0 chr11 66853506 66853801 -81929671 - AluSx SINE Alu -16 296 1 1797 162 3 10 chr11 66854392 66854700 -81928772 + AluJb SINE Alu 1 306 -6 199 318 135 0 chr11 66854938 66855086 -81928386 + L2 LINE L2 2129 2296 -1018 2158 110 0 3 chr11 66855393 66855694 -81927778 - AluSq SINE Alu -12 301 2 1632 227 72 14 chr11 66855699 66855746 -81927726 + L1ME1 LINE L1 4851 4894 -1272 2314 94 0 3 chr11 66855746 66856054 -81927418 - AluSx SINE Alu -5 307 1 1632 227 72 14 chr11 66856054 66856793 -81926679 + L1ME1 LINE L1 4894 5677 -489 548 272 46 26 chr11 66856794 66856989 -81926483 + L1ME1 LINE L1 5948 6146 -20 321 327 25 31 chr11 66857064 66857223 -81926249 + L1ME LINE L1 5612 5769 -352 533 122 0 0 chr11 66857261 66857335 -81926137 - FLAM SINE Alu -14 129 56 1190 142 50 36 chr11 66857336 66857555 -81925917 + AluJo SINE Alu 86 307 -5 3679 169 49 23 chr11 66857555 66858282 -81925190 + L1MB7 LINE L1 5369 6119 -65 1742 167 3 3 chr11 66858282 66858576 -81924896 - AluJo SINE Alu -18 294 1 3679 169 49 23 chr11 66858576 66858628 -81924844 + L1MB7 LINE L1 6119 6168 -16 438 296 53 24 chr11 66858625 66858674 -81924798 + L1M4 LINE L1 3112 3158 -2988 * 2224 122 0 6 chr11 66858674 66858986 -81924486 + AluSg SINE Alu 1 310 0 438 296 53 24 chr11 66858986 66859274 -81924198 + L1M4 LINE L1 3158 3459 -2687 1580 130 0 5 chr11 66859291 66859507 -81923965 - AluSg/x SINE Alu -15 295 81 2005 105 0 0 chr11 66859613 66859870 -81923602 - AluSc SINE Alu -52 257 1 201 147 0 0 chr11 66859881 66859915 -81923557 + (A)n Simple_repeat Simple_repeat 1 34 0 972 113 15 0 chr11 66860218 66860351 -81923121 + AluSq/x SINE Alu 1 135 -177 1897 138 16 35 chr11 66860351 66860669 -81922803 + AluSx SINE Alu 1 312 0 731 139 70 6 chr11 66860707 66860792 -81922680 - Charlie5 DNA MER1_type 0 2624 2546 2319 116 0 3 chr11 66860792 66861095 -81922377 - AluSg SINE Alu -8 302 1 731 139 70 6 chr11 66861095 66861181 -81922291 - Charlie5 DNA MER1_type -78 2546 2442 2153 132 7 3 chr11 66861182 66861492 -81921980 + AluSx SINE Alu 1 311 -1 372 77 19 0 chr11 66861538 66861590 -81921882 - Alu SINE Alu -255 53 1 293 141 203 0 chr11 66861635 66861699 -81921773 + MIR3 SINE MIR 112 188 -20 2099 96 46 0 chr11 66862449 66862730 -81920742 - AluSx SINE Alu -18 294 1 1761 172 10 13 chr11 66863035 66863343 -81920129 + AluJb SINE Alu 2 308 -4 275 324 42 28 chr11 66863343 66863485 -81919987 - MIR SINE MIR -72 190 47 2008 135 10 7 chr11 66863555 66863851 -81919621 + AluSx SINE Alu 1 297 -15 2202 61 11 7 chr11 66863924 66864204 -81919268 - AluY SINE Alu -30 281 1 1101 155 8 59 chr11 66864427 66864666 -81918806 - AluJo SINE Alu -14 298 72 870 295 182 0 chr11 66864739 66865156 -81918316 - L2 LINE L2 -1 3312 2820 2334 91 0 13 chr11 66865157 66865455 -81918017 + AluSx SINE Alu 1 294 -18 199 229 0 108 chr11 66865604 66865687 -81917785 - L2 LINE L2 -86 3227 3154 1511 136 89 54 chr11 66865699 66865957 -81917515 + AluJb SINE Alu 1 267 -45 1904 130 7 7 chr11 66917717 66918009 -81865463 - AluJb SINE Alu -20 292 1 181 111 0 0 chr11 66918545 66918572 -81864900 + MIR SINE MIR 97 123 -85 2269 78 0 3 chr11 66918573 66918869 -81864603 - AluSg SINE Alu -15 295 1 1337 150 35 0 chr11 66918869 66919095 -81864377 - AluJb SINE Alu -16 296 63 1871 205 71 25 chr11 66919114 66919553 -81863919 + LTR2B LTR ERV1 32 490 0 462 94 16 0 chr11 66919553 66919617 -81863855 - AluS SINE Alu -247 66 2 369 188 94 24 chr11 66919619 66919704 -81863768 - L1ME LINE L1 -506 5615 5525 302 245 10 41 chr11 66919819 66919917 -81863555 + L2 LINE L2 2286 2380 -934 2426 80 0 0 chr11 66921856 66922167 -81861305 - AluY SINE Alu 0 311 1 833 162 0 7 chr11 66922167 66922309 -81861163 - AluJo SINE Alu -169 143 3 2581 36 0 3 chr11 66922431 66922739 -81860733 - AluY SINE Alu -2 309 3 2177 107 0 7 chr11 66922740 66923048 -81860424 - AluSx SINE Alu -6 306 1 325 111 14 42 chr11 66923227 66923299 -81860173 - L1MB8 LINE L1 0 6178 6109 2019 117 0 0 chr11 66923346 66923666 -81859806 - AluSx SINE Alu 0 320 1 1942 195 56 0 chr11 66923669 66924115 -81859357 - L1MB7 LINE L1 -18 6166 5696 1159 127 6 0 chr11 66924115 66924288 -81859184 - AluSg/x SINE Alu -9 301 128 2116 108 0 3 chr11 66924293 66924588 -81858884 - AluSx SINE Alu -18 294 1 1023 179 21 0 chr11 66924594 66924784 -81858688 - L1MB7 LINE L1 -484 5694 5501 213 94 0 0 chr11 66924788 66924820 -81858652 + (TTA)n Simple_repeat Simple_repeat 2 33 0 239 310 95 6 chr11 66924937 66925095 -81858377 + L2 LINE L2 2559 2730 -584 245 145 97 32 chr11 66925459 66925521 -81857951 + L2 LINE L2 3248 3313 0 197 277 15 15 chr11 66926822 66926887 -81856585 - MIR SINE MIR -115 93 29 225 267 67 0 chr11 66926988 66927063 -81856409 + MIR SINE MIR 79 158 -104 320 235 153 0 chr11 66927168 66927266 -81856206 - MIR SINE MIR -79 183 71 480 295 45 0 chr11 66927951 66928107 -81855365 - MIR SINE MIR -19 243 81 2292 93 7 0 chr11 66928127 66928427 -81855045 - AluSx SINE Alu -10 302 1 352 253 133 33 chr11 66929330 66929513 -81853959 + MIR SINE MIR 37 259 -3 278 342 76 32 chr11 66929586 66929744 -81853728 - MIR SINE MIR -26 236 72 2289 87 6 0 chr11 66930255 66930566 -81852906 + AluSp SINE Alu 1 313 0 2096 119 3 3 chr11 66930574 66930876 -81852596 + AluSp SINE Alu 1 302 -11 2193 92 0 7 chr11 66930878 66931209 -81852263 + AluSx SINE Alu 1 329 0 317 309 66 13 chr11 66931213 66931365 -81852107 + L3b LINE CR1 1114 1273 -310 1287 226 83 114 chr11 66931369 66932034 -81851438 - MER76 LTR ERV -33 655 12 2247 95 3 0 chr11 66932039 66932343 -81851129 - AluSx SINE Alu -5 307 3 2146 118 0 0 chr11 66932349 66932655 -81850817 - AluSx SINE Alu -6 306 1 1146 133 0 0 chr11 66932655 66932828 -81850644 - AluSg/x SINE Alu -6 304 132 1478 174 20 20 chr11 66933921 66934220 -81849252 - AluJo SINE Alu -3 309 11 994 171 71 5 chr11 66934300 66934510 -81848962 + MIR SINE MIR 2 225 -37 223 163 0 23 chr11 66934640 66934683 -81848789 + (CA)n Simple_repeat Simple_repeat 2 43 0 2079 110 3 10 chr11 66934709 66935010 -81848462 + AluSx SINE Alu 1 299 -13 210 118 0 0 chr11 66935131 66935165 -81848307 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 285 358 55 12 chr11 66935178 66935343 -81848129 - L3 LINE CR1 -4 1573 1402 2018 205 126 25 chr11 66935459 66936021 -81847451 - MLT1E3 LTR MaLR -5 619 1 2064 144 0 0 chr11 66936038 66936350 -81847122 - AluSx SINE Alu 0 312 1 1165 213 126 14 chr11 66936357 66936705 -81846767 - L1ME3A LINE L1 -6 6164 5778 343 169 0 0 chr11 66936743 66936802 -81846670 + L1MD3 LINE L1 7937 7995 0 2424 171 65 0 chr11 66936926 66937370 -81846102 + MLT1D LTR MaLR 33 505 0 2237 92 0 0 chr11 66937383 66937678 -81845794 - AluSx SINE Alu -17 295 1 3267 160 10 81 chr11 66937763 66937817 -81845655 + L1PB4 LINE L1 5477 5533 -623 2187 97 3 3 chr11 66937817 66938116 -81845356 - AluSx SINE Alu -13 299 1 3267 160 10 81 chr11 66938116 66938793 -81844679 + L1PB4 LINE L1 5533 6156 0 508 99 72 54 chr11 66938923 66939034 -81844438 + L1MB2 LINE L1 6056 6168 -3 2165 123 0 0 chr11 66939046 66939354 -81844118 + AluSq SINE Alu 6 313 0 1684 132 0 118 chr11 66939404 66939521 -81843951 + AluJb SINE Alu 1 130 -172 198 0 0 0 chr11 66939521 66939543 -81843929 + (CAA)n Simple_repeat Simple_repeat 3 24 0 1684 132 0 118 chr11 66939543 66939765 -81843707 + AluJb SINE Alu 130 300 -2 25 75 0 0 chr11 66939813 66939866 -81843606 + AT_rich Low_complexity Low_complexity 1 53 0 2478 56 0 0 chr11 66940361 66940665 -81842807 - AluY SINE Alu -5 306 3 700 163 0 0 chr11 66940667 66940802 -81842670 - L1M4 LINE L1 -857 5289 5155 291 175 0 0 chr11 66940852 66940909 -81842563 + T-rich Low_complexity Low_complexity 1 57 0 873 295 79 17 chr11 66941126 66941699 -81841773 - L1MEd LINE L1 -4863 1256 714 1491 186 61 0 chr11 66941808 66942088 -81841384 - AluJb SINE Alu -2 310 14 2171 108 0 3 chr11 66942106 66942403 -81841069 - AluSg1 SINE Alu -13 296 1 923 158 79 28 chr11 66942406 66942583 -81840889 - AluJo SINE Alu -17 295 110 21 0 0 0 chr11 66942755 66942776 -81840696 + AT_rich Low_complexity Low_complexity 1 21 0 826 160 15 0 chr11 66943150 66943281 -81840191 + FLAM_C SINE Alu 1 133 0 1645 140 4 0 chr11 66943480 66943730 -81839742 - AluSq SINE Alu -48 265 15 913 95 8 0 chr11 66943862 66943988 -81839484 - AluSg SINE Alu -183 127 1 1834 92 81 0 chr11 66944075 66944335 -81839137 - AluSg SINE Alu -15 295 15 239 232 0 131 chr11 66944363 66944419 -81839053 - MLT1D LTR MaLR -417 88 49 1456 188 13 26 chr11 66944419 66944728 -81838744 - AluJb SINE Alu -7 305 1 239 232 0 131 chr11 66944728 66944770 -81838702 - MLT1D LTR MaLR -456 49 3 257 274 0 14 chr11 66945106 66945179 -81838293 + L2 LINE L2 3240 3311 -2 468 188 21 10 chr11 66945487 66945583 -81837889 + MIR3 SINE MIR 89 185 -23 2434 36 0 29 chr11 66945612 66945919 -81837553 + AluY SINE Alu 1 298 -13 1178 91 0 0 chr11 66945919 66946073 -81837399 + AluSg/x SINE Alu 132 285 -25 30 0 0 0 chr11 66946081 66946111 -81837361 + AT_rich Low_complexity Low_complexity 1 30 0 1548 161 3 25 chr11 66946111 66946396 -81837076 - AluJo SINE Alu -33 279 1 1969 117 3 0 chr11 66946466 66946772 -81836700 - AluSx SINE Alu 0 307 1 1643 143 47 27 chr11 66946780 66947081 -81836391 - AluJb SINE Alu -5 307 1 2171 90 30 0 chr11 66947950 66948251 -81835221 + AluSg SINE Alu 1 310 0 2191 108 3 0 chr11 66949832 66950128 -81833344 - AluSx SINE Alu -15 297 1 188 382 67 0 chr11 66951219 66951308 -81832164 - MIR3 SINE MIR -48 160 66 211 225 39 20 chr11 66951475 66951533 -81831939 + MIR SINE MIR 95 146 -62 498 236 0 0 chr11 66951824 66951930 -81831542 - MLT1D LTR MaLR 0 505 400 2062 116 0 0 chr11 66951930 66952222 -81831250 + AluSx SINE Alu 1 292 -20 1202 129 0 0 chr11 66952222 66952400 -81831072 + AluSg/x SINE Alu 134 311 -1 312 306 58 16 chr11 66952584 66952705 -81830767 + L1ME4a LINE L1 5982 6107 -14 241 214 77 75 chr11 66952864 66953005 -81830467 - MIR SINE MIR -70 138 10 208 312 13 0 chr11 66953056 66953133 -81830339 + G-rich Low_complexity Low_complexity 3 80 0 310 308 10 0 chr11 66953834 66953938 -81829534 - MIR SINE MIR -123 139 35 352 283 28 9 chr11 66954303 66954409 -81829063 + MIR SINE MIR 38 145 -63 2065 196 35 35 chr11 66955660 66955840 -81827632 + L1MD1 LINE L1 5436 5615 -627 1850 124 34 10 chr11 66955840 66956131 -81827341 - AluSx SINE Alu -14 298 1 2065 196 35 35 chr11 66956131 66956409 -81827063 + L1MD1 LINE L1 5614 5894 -348 667 120 0 0 chr11 66956417 66956517 -81826955 + AluY SINE Alu 212 311 0 571 162 19 0 chr11 66956524 66956629 -81826843 + L1MD1 LINE L1 5889 5995 -247 738 108 29 0 chr11 66956730 66956832 -81826640 + AluSq/x SINE Alu 2 106 -206 2161 111 0 0 chr11 66956878 66957176 -81826296 + AluSx SINE Alu 1 298 -14 1961 90 4 11 chr11 66957395 66957662 -81825810 - AluSg SINE Alu -45 265 1 605 134 8 60 chr11 66957706 66957798 -81825674 - L1M4 LINE L1 -857 5289 5205 2142 111 3 0 chr11 66957798 66958095 -81825377 - AluSg SINE Alu -12 298 1 605 134 8 60 chr11 66958095 66958136 -81825336 - L1M4 LINE L1 -941 5205 5163 1044 157 44 10 chr11 66958136 66958340 -81825132 - AluJo SINE Alu -8 304 94 1856 88 0 4 chr11 66958340 66958590 -81824882 + AluSp SINE Alu 47 295 -18 435 241 9 0 chr11 66958591 66958707 -81824765 - L1M4 LINE L1 -1247 4899 4783 189 0 0 0 chr11 66958710 66958731 -81824741 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1641 143 11 29 chr11 66958731 66959004 -81824468 - AluJo SINE Alu -36 276 9 22 35 0 0 chr11 66959025 66959054 -81824418 + AT_rich Low_complexity Low_complexity 1 29 0 1568 98 71 24 chr11 66959193 66959448 -81824024 - AluSg SINE Alu 0 310 44 230 174 22 0 chr11 66959449 66959495 -81823977 - L1M4 LINE L1 -1353 4793 4747 944 128 0 0 chr11 66959496 66959629 -81823843 - FLAM_C SINE Alu 0 133 1 1827 123 0 58 chr11 66959640 66959812 -81823660 - AluSx SINE Alu -17 295 147 2226 96 0 13 chr11 66959812 66960125 -81823347 - AluSc SINE Alu 0 309 1 1827 123 0 58 chr11 66960125 66960261 -81823211 - AluSx SINE Alu -165 147 5 1178 128 0 17 chr11 66960277 66960440 -81823032 - AluSq SINE Alu -17 296 135 2398 73 0 0 chr11 66960440 66960740 -81822732 - AluSq SINE Alu -13 300 1 1178 128 0 17 chr11 66960740 66960756 -81822716 - AluSq SINE Alu -178 135 120 844 209 94 51 chr11 66960756 66961106 -81822366 - L1M4 LINE L1 -1401 4745 4381 929 143 0 50 chr11 66961125 66961307 -81822165 - FRAM SINE Alu -9 167 1 724 200 7 21 chr11 66961347 66961492 -81821980 - FLAM_C SINE Alu 0 143 1 260 226 29 29 chr11 66961492 66961594 -81821878 - L1M4 LINE L1 -1765 4381 4280 1418 148 141 0 chr11 66961596 66961852 -81821620 - AluSx SINE Alu -18 294 3 1101 66 0 0 chr11 66961853 66961989 -81821483 - AluSq/x SINE Alu -176 136 1 360 219 83 21 chr11 66962084 66962180 -81821292 + MLT1F LTR MaLR 1 102 -440 1845 139 0 20 chr11 66962230 66962524 -81820948 + AluSx SINE Alu 11 298 -14 1899 180 63 63 chr11 66962557 66962703 -81820769 - MER74A LTR ERVL -37 521 376 2235 82 3 7 chr11 66962703 66963007 -81820465 - AluSc SINE Alu 0 309 7 1899 180 63 63 chr11 66963007 66963381 -81820091 - MER74A LTR ERVL -181 377 1 998 209 140 104 chr11 66963381 66963675 -81819797 + MLT1F LTR MaLR 99 414 -128 2158 109 3 6 chr11 66963675 66963988 -81819484 + AluSq SINE Alu 1 312 -1 998 209 140 104 chr11 66963988 66964114 -81819358 + MLT1F LTR MaLR 414 534 -8 224 325 50 0 chr11 66964129 66964209 -81819263 - MIR SINE MIR -62 146 63 182 225 0 0 chr11 66964227 66964267 -81819205 + L2 LINE L2 3266 3305 -8 2099 112 0 13 chr11 66964336 66964649 -81818823 + AluSc SINE Alu 1 309 0 336 305 238 0 chr11 66964753 66965055 -81818417 - L2 LINE L2 -1 3312 2939 673 123 0 38 chr11 66966251 66966357 -81817115 - FRAM SINE Alu -16 160 59 2340 71 10 3 chr11 66966831 66967139 -81816333 - AluSg SINE Alu 0 310 1 369 138 0 103 chr11 66967169 66967285 -81816187 + AluY SINE Alu 2 105 -196 452 239 17 8 chr11 66967488 66967605 -81815867 - LTR37B LTR ERV1 -151 317 200 216 0 0 0 chr11 66967750 66967774 -81815698 + (A)n Simple_repeat Simple_repeat 1 24 0 932 189 5 11 chr11 66967778 66967963 -81815509 + AluJb SINE Alu 120 303 -9 2339 59 0 16 chr11 66968174 66968479 -81814993 + AluY SINE Alu 1 300 -11 2388 101 35 3 chr11 66968479 66968846 -81814626 + LTR15 LTR ERV1 109 487 -6 772 150 0 0 chr11 66968849 66968969 -81814503 + FRAM SINE Alu 45 164 -12 483 280 111 42 chr11 66968974 66969306 -81814166 + L1MEd LINE L1 98 452 -5667 2235 103 0 6 chr11 66969445 66969756 -81813716 - AluSx SINE Alu -2 310 2 2207 70 0 20 chr11 66969896 66970197 -81813275 + AluY SINE Alu 11 305 -6 602 97 78 10 chr11 66970201 66970304 -81813168 - MER101 LTR ERV1 -354 120 11 294 111 0 0 chr11 66970309 66970354 -81813118 + MER58 DNA MER1_type 2367 2411 -9 498 404 55 13 chr11 66970523 66970830 -81812642 - L1 LINE L1 -1071 5075 4756 765 215 45 69 chr11 66970873 66971119 -81812353 - MLT1J LTR MaLR -41 470 231 222 304 0 0 chr11 66971133 66971202 -81812270 + A-rich Low_complexity Low_complexity 1 69 0 227 219 232 24 chr11 66971238 66971320 -81812152 - MLT1J LTR MaLR -303 208 110 1587 139 6 108 chr11 66971486 66971662 -81811810 - AluJo SINE Alu -14 298 170 2025 108 3 0 chr11 66971662 66971949 -81811523 - AluSx SINE Alu -1 311 24 1587 139 6 108 chr11 66971949 66972104 -81811368 - AluJo SINE Alu -142 170 1 21 0 0 0 chr11 66972185 66972206 -81811266 + AT_rich Low_complexity Low_complexity 1 21 0 348 321 75 38 chr11 66972221 66972444 -81811028 - L1 LINE L1 -1605 4541 4328 1373 180 96 4 chr11 66972444 66972716 -81810756 - AluJb SINE Alu -15 297 1 348 321 75 38 chr11 66972716 66972987 -81810485 - L1 LINE L1 -1818 4328 4029 1956 77 15 11 chr11 66973015 66973287 -81810185 + AluSq SINE Alu 26 298 -15 1498 117 11 50 chr11 66973289 66973590 -81809882 + AluSx SINE Alu 14 303 0 181 111 0 0 chr11 66973590 66973617 -81809855 - MIR SINE MIR -85 123 97 1933 131 7 3 chr11 66974153 66974444 -81809028 + AluJo SINE Alu 1 292 -20 2226 113 0 0 chr11 66978659 66978970 -81804502 - AluSq SINE Alu -2 311 1 622 206 0 0 chr11 66980429 66980536 -81802936 - FLAM_A SINE Alu -16 126 20 248 339 78 44 chr11 66980547 66980704 -81802768 - L1MC4a LINE L1 -1878 5930 5765 1565 122 16 96 chr11 66980704 66981016 -81802456 - AluJo SINE Alu -20 292 6 248 339 78 44 chr11 66981016 66981038 -81802434 - L1MC4a LINE L1 -2043 5765 5745 281 244 13 26 chr11 66981079 66981157 -81802315 + CT-rich Low_complexity Low_complexity 3 79 0 237 132 0 0 chr11 66981377 66981415 -81802057 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 1068 172 3 4 chr11 66981420 66982354 -81801118 + (TGAG)n Simple_repeat Simple_repeat 1 1114 -27 1188 111 0 0 chr11 66982354 66982534 -81800938 + (TGGG)n Simple_repeat Simple_repeat 1 180 0 1068 172 3 4 chr11 66982534 66982562 -81800910 + (TGAG)n Simple_repeat Simple_repeat 1114 1141 0 217 204 0 0 chr11 66983587 66983631 -81799841 + MIR3 SINE MIR 113 156 -52 181 299 134 0 chr11 66983654 66983721 -81799751 - L2 LINE L2 -11 3261 3186 204 297 0 16 chr11 66983724 66983788 -81799684 + MIR3 SINE MIR 143 205 -3 261 151 0 0 chr11 66984267 66984320 -81799152 + (CA)n Simple_repeat Simple_repeat 2 54 0 1148 237 116 45 chr11 66984586 66984774 -81798698 - L2 LINE L2 -23 3290 3117 2136 100 13 3 chr11 66984774 66985075 -81798397 + AluSx SINE Alu 1 304 -8 1148 237 116 45 chr11 66985075 66985644 -81797828 - L2 LINE L2 -196 3117 2492 385 178 122 19 chr11 66985672 66985779 -81797693 - L1MC4a LINE L1 -1980 5828 5711 326 283 39 80 chr11 66985814 66985899 -81797573 - L1MC4a LINE L1 -814 5332 5245 2040 117 3 19 chr11 66985899 66986215 -81797257 - AluSx SINE Alu -1 311 1 326 283 39 80 chr11 66986215 66986518 -81796954 - L1MC4a LINE L1 -901 5245 4960 197 250 83 52 chr11 66987133 66987229 -81796243 - MIR SINE MIR -125 137 39 2036 105 3 51 chr11 66987233 66987547 -81795925 + AluSx SINE Alu 6 304 -8 2218 82 6 25 chr11 66987585 66987903 -81795569 - AluSx SINE Alu 0 312 1 278 342 76 32 chr11 66988414 66988572 -81794900 + MIR SINE MIR 72 236 -26 352 253 133 33 chr11 66988645 66988828 -81794644 - MIR SINE MIR -3 259 37 2460 60 7 0 chr11 66989733 66990035 -81793437 + AluY SINE Alu 1 304 -7 318 50 0 0 chr11 66990285 66990337 -81793135 + (TCCCC)n Simple_repeat Simple_repeat 1 92 0 318 50 0 0 chr11 66990337 66990377 -81793095 + (TCCCC)n Simple_repeat Simple_repeat 5 44 0 1259 112 0 0 chr11 66990385 66990555 -81792917 - AluSc SINE Alu -33 276 107 202 179 30 119 chr11 66990676 66990721 -81792751 + MIR SINE MIR 158 197 -65 1551 165 70 14 chr11 66990721 66991006 -81792466 + AluJo SINE Alu 1 301 -1 202 179 30 119 chr11 66991006 66991027 -81792445 + MIR SINE MIR 197 218 -44 1478 174 20 20 chr11 66991816 66992115 -81791357 - AluJo SINE Alu -3 309 11 994 171 71 5 chr11 66992195 66992405 -81791067 + MIR SINE MIR 2 225 -37 198 118 0 0 chr11 66992544 66992578 -81790894 + (CA)n Simple_repeat Simple_repeat 2 35 0 2139 107 3 7 chr11 66992604 66992904 -81790568 + AluSx SINE Alu 1 299 -13 210 118 0 0 chr11 66993025 66993059 -81790413 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 285 358 55 12 chr11 66993072 66993237 -81790235 - L3 LINE CR1 -4 1573 1402 2018 205 126 25 chr11 66993353 66993915 -81789557 - MLT1E3 LTR MaLR -5 619 1 2064 144 0 0 chr11 66993932 66994244 -81789228 - AluSx SINE Alu 0 312 1 1165 213 126 14 chr11 66994251 66994599 -81788873 - L1ME3A LINE L1 -6 6164 5778 343 169 0 0 chr11 66994637 66994696 -81788776 + L1MD3 LINE L1 7937 7995 0 2454 169 65 0 chr11 66994820 66995264 -81788208 + MLT1D LTR MaLR 33 505 0 1896 80 76 11 chr11 66995277 66995553 -81787919 - AluY SINE Alu -17 294 1 434 219 21 0 chr11 66995553 66995649 -81787823 - L1ME3A LINE L1 -401 5769 5672 912 82 7 14 chr11 66995665 66995811 -81787661 + (TTCC)n Simple_repeat Simple_repeat 3 147 0 827 168 0 0 chr11 66995814 66995933 -81787539 - FLAM_C SINE Alu -23 120 2 1236 267 22 11 chr11 66995941 66996308 -81787164 - L1ME3A LINE L1 -508 5662 5292 2055 118 3 0 chr11 66996334 66996621 -81786851 + AluSq SINE Alu 1 288 -25 355 257 54 24 chr11 66996622 66996815 -81786657 - L1MC4 LINE L1 -1339 6983 1912 2395 158 90 47 chr11 66996820 66997182 -81786290 - L1MD3 LINE L1 0 7995 7650 1894 120 4 0 chr11 66997182 66997449 -81786023 - AluSx SINE Alu -44 268 1 2395 158 90 47 chr11 66997449 66997539 -81785933 - L1MD3 LINE L1 -345 7650 7565 198 0 0 0 chr11 66997539 66997561 -81785911 + (CATAT)n Simple_repeat Simple_repeat 4 25 0 2395 158 90 47 chr11 66997561 66997683 -81785789 - L1MD3 LINE L1 -430 7565 7395 875 145 0 0 chr11 66997737 66997868 -81785604 - AluJb SINE Alu -171 141 11 386 187 107 0 chr11 66997883 66997958 -81785514 - MLT1F1 LTR MaLR -442 125 43 2061 87 42 7 chr11 66997962 66998276 -81785196 - AluSg1 SINE Alu 0 309 1 762 140 111 133 chr11 66998289 66998568 -81784904 - L1MD3 LINE L1 -877 7118 6846 2219 89 20 7 chr11 66999176 66999479 -81783993 + AluSx SINE Alu 1 307 -5 438 313 37 0 chr11 66999738 66999901 -81783571 + MER5B DNA MER1_type 1 169 -9 311 180 49 0 chr11 66999955 67000016 -81783456 + MIR SINE MIR 86 149 -113 401 288 1 29 chr11 67000092 67000205 -81783267 + L1MC4 LINE L1 1969 6983 -1339 1952 118 35 0 chr11 67000275 67000564 -81782908 - AluSx SINE Alu -13 299 1 483 145 0 0 chr11 67000594 67000677 -81782795 + (TCCC)n Simple_repeat Simple_repeat 2 84 0 2014 147 0 10 chr11 67000690 67001004 -81782468 - AluJb SINE Alu -1 311 1 559 305 6 12 chr11 67001029 67001193 -81782279 - MER5B DNA MER1_type -5 173 11 2141 99 7 0 chr11 67001314 67001623 -81781849 + AluSx SINE Alu 1 311 0 563 245 53 7 chr11 67001679 67001830 -81781642 - MIR SINE MIR -81 181 24 2323 90 0 0 chr11 67003438 67003748 -81779724 - AluSg SINE Alu 0 310 1 327 340 31 19 chr11 67003748 67003910 -81779562 + L2 LINE L2 2507 2670 -644 1040 96 7 0 chr11 67003998 67004134 -81779338 + AluSx SINE Alu 1 137 -176 280 306 0 0 chr11 67004144 67004216 -81779256 + MLT1J LTR MaLR 239 310 -201 246 62 0 0 chr11 67004237 67004269 -81779203 + (TCTCCC)n Simple_repeat Simple_repeat 5 36 0 8489 29 6 260 chr11 67004270 67006125 -81777347 + SVA Other Other 3 1386 0 377 234 153 8 chr11 67006138 67006262 -81777210 + MLT1J LTR MaLR 311 452 -59 1254 80 6 0 chr11 67006269 67006431 -81777041 + AluSx SINE Alu 119 281 -29 2330 81 7 7 chr11 67006625 67006933 -81776539 + AluSg SINE Alu 3 310 0 833 128 0 71 chr11 67007052 67007193 -81776279 + FLAM_C SINE Alu 2 132 -11 2452 126 83 8 chr11 67008170 67008568 -81774904 - MSTA LTR MaLR 0 428 1 271 287 110 37 chr11 67008751 67008887 -81774585 + L2 LINE L2 3166 3311 -2 676 237 14 0 chr11 67008991 67009130 -81774342 - AluJo SINE Alu -149 163 23 202 200 22 0 chr11 67009924 67009969 -81773503 + L2 LINE L2 3225 3270 -2 2141 114 0 0 chr11 67009970 67010268 -81773204 - AluSx SINE Alu -14 298 1 1602 172 38 7 chr11 67010282 67010573 -81772899 - AluJb SINE Alu -12 300 1 197 139 181 125 chr11 67010604 67010655 -81772817 - MER5B DNA MER1_type -1 177 119 2151 102 0 10 chr11 67010655 67010958 -81772514 + AluSc SINE Alu 1 300 -9 197 139 181 125 chr11 67010958 67010978 -81772494 - MER5B DNA MER1_type -59 119 102 2361 87 3 0 chr11 67011127 67011439 -81772033 - AluSp SINE Alu 0 313 1 1556 153 51 4 chr11 67011780 67012055 -81771417 + AluJo SINE Alu 6 293 -19 606 51 0 0 chr11 67012055 67012133 -81771339 + (TA)n Simple_repeat Simple_repeat 2 79 0 2115 113 0 0 chr11 67012903 67013203 -81770269 + AluSx SINE Alu 1 300 -12 281 44 67 0 chr11 67013224 67013269 -81770203 + A-rich Low_complexity Low_complexity 2 49 0 1562 152 62 4 chr11 67013584 67013860 -81769612 + AluJb SINE Alu 2 293 -19 2093 106 0 3 chr11 67013862 67014188 -81769284 + AluSx SINE Alu 1 325 0 2135 91 0 3 chr11 67014576 67014922 -81768550 + AluSx SINE Alu 1 345 0 1011 181 13 44 chr11 67014929 67015156 -81768316 + AluJo SINE Alu 1 220 -92 312 102 0 20 chr11 67015156 67015205 -81768267 + AluJb SINE Alu 86 133 -169 2044 130 0 0 chr11 67015234 67015526 -81767946 + AluSx SINE Alu 2 293 -19 512 130 0 0 chr11 67015544 67015613 -81767859 + FRAM/FAM SINE Alu 8 76 -100 2178 111 0 0 chr11 67015696 67016071 -81767401 + AluSx SINE Alu 1 375 0 2268 207 36 16 chr11 67016094 67016597 -81766875 + REP3 LTR ERV 50 562 0 331 198 0 129 chr11 67016846 67016947 -81766525 + L1MC4 LINE L1 6615 6702 -1340 * 350 145 0 72 chr11 67016918 67016970 -81766502 - L1MC4 LINE L1 -1339 6703 6649 183 42 0 0 chr11 67016970 67016994 -81766478 + (GA)n Simple_repeat Simple_repeat 2 25 0 1963 120 0 0 chr11 67016994 67017268 -81766204 - AluSq SINE Alu -39 274 1 350 145 0 72 chr11 67017268 67017283 -81766189 - L1MC4 LINE L1 -1391 6651 6640 2438 66 3 0 chr11 67017913 67018216 -81765256 + AluSp SINE Alu 1 304 -9 259 228 0 0 chr11 67018273 67018330 -81765142 - L1ME3 LINE L1 -211 5951 5895 278 122 0 0 chr11 67018346 67018387 -81765085 + Alu SINE Alu 256 296 -6 2214 97 0 0 chr11 67018391 67018689 -81764783 - AluSx SINE Alu -14 298 1 3428 159 9 83 chr11 67018774 67018830 -81764642 + L1PB4 LINE L1 5477 5536 -620 2207 95 3 0 chr11 67018830 67019126 -81764346 - AluSx SINE Alu -15 297 1 3428 159 9 83 chr11 67019126 67019803 -81763669 + L1PB4 LINE L1 5536 6156 0 502 98 24 0 chr11 67019962 67020044 -81763428 + L1MB2 LINE L1 6085 6168 -3 2046 102 4 0 chr11 67020056 67020331 -81763141 + AluSq SINE Alu 6 281 -32 197 83 28 0 chr11 67020332 67020368 -81763104 + (CAAA)n Simple_repeat Simple_repeat 1 37 0 1648 128 0 119 chr11 67020413 67020530 -81762942 + AluJb SINE Alu 1 130 -172 198 0 0 0 chr11 67020530 67020552 -81762920 + (CAA)n Simple_repeat Simple_repeat 3 24 0 1648 128 0 119 chr11 67020552 67020769 -81762703 + AluJb SINE Alu 130 295 -7 25 75 0 0 chr11 67020822 67020875 -81762597 + AT_rich Low_complexity Low_complexity 1 53 0 2458 56 0 0 chr11 67021370 67021674 -81761798 - AluY SINE Alu -5 306 3 743 163 0 0 chr11 67021676 67021811 -81761661 - L1M4 LINE L1 -857 5289 5155 2196 113 0 7 chr11 67021861 67022203 -81761269 - AluSg SINE Alu 0 340 1 2191 101 3 0 chr11 67022348 67022645 -81760827 - AluSq SINE Alu -3 310 13 1921 79 8 11 chr11 67022645 67022912 -81760560 - AluSq SINE Alu -14 299 34 308 299 84 44 chr11 67022990 67023217 -81760255 + L1 LINE L1 4073 4289 -1857 1410 173 96 0 chr11 67023217 67023488 -81759984 + AluJb SINE Alu 1 297 -15 308 299 84 44 chr11 67023488 67023711 -81759761 + L1 LINE L1 4289 4541 -1605 21 0 0 0 chr11 67023726 67023747 -81759725 + AT_rich Low_complexity Low_complexity 1 21 0 1610 137 6 86 chr11 67023828 67023974 -81759498 + AluJo SINE Alu 1 110 -202 1997 108 30 0 chr11 67023974 67024270 -81759202 + AluSx SINE Alu 7 311 -1 1610 137 6 86 chr11 67024270 67024438 -81759034 + AluJo SINE Alu 110 290 -22 244 219 232 24 chr11 67024612 67024694 -81758778 + MLT1J LTR MaLR 110 208 -303 222 304 0 0 chr11 67024730 67024799 -81758673 + T-rich Low_complexity Low_complexity 1 69 0 794 209 60 68 chr11 67024810 67025059 -81758413 + MLT1J LTR MaLR 224 470 -41 439 365 45 41 chr11 67025102 67025392 -81758080 + L1 LINE L1 4756 5046 -1100 309 111 0 0 chr11 67025578 67025623 -81757849 - MER58 DNA MER1_type -9 2411 2367 633 97 78 10 chr11 67025628 67025731 -81757741 + MER101 LTR ERV1 11 120 -354 2160 79 0 41 chr11 67025735 67026053 -81757419 - AluY SINE Alu -6 305 1 1305 137 40 4 chr11 67026053 67026279 -81757193 - AluJb SINE Alu -16 296 63 1895 205 71 25 chr11 67026298 67026737 -81756735 + LTR2B LTR ERV1 32 490 0 459 94 16 0 chr11 67026737 67026801 -81756671 - AluS SINE Alu -246 66 2 388 188 94 24 chr11 67026803 67026888 -81756584 - L1ME LINE L1 -506 5615 5525 295 212 80 35 chr11 67027003 67027116 -81756356 + L2 LINE L2 2286 2403 -911 2061 106 13 13 chr11 67028936 67029239 -81754233 - AluSx SINE Alu -9 303 1 2194 105 3 0 chr11 67029261 67029557 -81753915 + AluSp SINE Alu 1 297 -16 201 263 35 0 chr11 67029716 67029773 -81753699 + L2 LINE L2 1224 1282 -2032 2152 98 13 3 chr11 67029774 67030081 -81753391 - AluSq SINE Alu 0 313 4 892 79 0 0 chr11 67030083 67030197 -81753275 - AluSq/x SINE Alu -176 137 24 4172 260 78 25 chr11 67030208 67030664 -81752808 + L2 LINE L2 1279 1709 -1605 2152 93 0 0 chr11 67030664 67030954 -81752518 + AluSc SINE Alu 1 290 -19 4172 260 78 25 chr11 67030954 67031194 -81752278 + L2 LINE L2 1709 1935 -1379 1690 164 17 3 chr11 67031194 67031492 -81751980 - AluJb SINE Alu -10 302 1 4172 260 78 25 chr11 67031492 67032121 -81751351 + L2 LINE L2 1935 2676 -638 324 279 189 9 chr11 67032107 67032218 -81751254 + L2 LINE L2 3137 3267 -5 * 578 262 154 19 chr11 67032500 67032641 -81750831 + MIR SINE MIR 20 141 -121 2138 96 7 0 chr11 67032641 67032933 -81750539 + AluSg SINE Alu 1 294 -16 578 262 154 19 chr11 67032933 67033005 -81750467 + MIR SINE MIR 141 262 0 1409 162 7 84 chr11 67033378 67033509 -81749963 + AluSx SINE Alu 1 141 -171 2106 94 7 10 chr11 67033509 67033808 -81749664 - AluSq SINE Alu -15 298 1 1409 162 7 84 chr11 67033808 67033984 -81749488 + AluSx SINE Alu 141 284 -28 2136 66 42 11 chr11 67034070 67034357 -81749115 - AluY SINE Alu -15 296 1 259 286 32 0 chr11 67034819 67034882 -81748590 + MIR SINE MIR 82 146 -62 418 256 66 33 chr11 67034882 67034916 -81748556 - L2 LINE L2 0 3272 3241 2399 67 0 16 chr11 67034916 67035231 -81748241 + AluY SINE Alu 1 310 -1 418 256 66 33 chr11 67035231 67035317 -81748155 - L2 LINE L2 -31 3241 3148 2036 97 14 0 chr11 67035538 67035846 -81747626 - AluSq SINE Alu 0 313 1 520 204 204 8 chr11 67035951 67036083 -81747389 + AluJb SINE Alu 137 294 -18 1056 271 107 47 chr11 67036225 67036950 -81746522 + L2 LINE L2 2356 3256 -57 1840 114 75 0 chr11 67037293 67037574 -81745898 + AluSx SINE Alu 1 302 -10 245 298 0 0 chr11 67037646 67037703 -81745769 + MIR SINE MIR 198 254 -8 2006 129 3 0 chr11 67037743 67038038 -81745434 + AluSx SINE Alu 1 296 -16 2312 58 10 7 chr11 67038453 67038744 -81744728 + AluSq SINE Alu 9 300 -13 2016 115 26 7 chr11 67038753 67039058 -81744414 + AluSx SINE Alu 1 311 -1 33 25 0 0 chr11 67039351 67039391 -81744081 + AT_rich Low_complexity Low_complexity 1 40 0 801 162 0 0 chr11 67039391 67039508 -81743964 - AluJb SINE Alu -194 118 2 308 294 22 81 chr11 67039509 67039645 -81743827 + L1ME4a LINE L1 5593 5720 -401 298 303 53 27 chr11 67039685 67039806 -81743666 + L1ME4a LINE L1 5705 5821 -300 1797 96 7 70 chr11 67039806 67040108 -81743364 + AluSp SINE Alu 22 304 -9 1882 149 13 0 chr11 67040113 67040414 -81743058 + AluSx SINE Alu 1 305 -7 298 303 53 27 chr11 67040414 67040474 -81742998 + L1ME4a LINE L1 5824 5897 -224 801 160 15 0 chr11 67040577 67040708 -81742764 - FLAM_C SINE Alu 0 133 1 180 0 0 0 chr11 67041082 67041102 -81742370 + (A)n Simple_repeat Simple_repeat 1 20 0 2013 107 10 0 chr11 67042506 67042804 -81740668 - AluSx SINE Alu -11 301 1 1965 167 0 0 chr11 67042881 67043192 -81740280 - AluJb SINE Alu 0 312 2 390 269 152 86 chr11 67045893 67046106 -81737366 + L3 LINE CR1 1136 1334 -243 909 204 67 51 chr11 67046106 67046361 -81737111 + MIR SINE MIR 4 262 0 390 269 152 86 chr11 67046361 67046556 -81736916 + L3 LINE CR1 1334 1571 -6 611 285 30 6 chr11 67047040 67047205 -81736267 + MIR SINE MIR 27 195 -67 1037 217 18 5 chr11 67047594 67047815 -81735657 - MER58A DNA MER1_type 0 224 1 1659 153 7 20 chr11 67048562 67048856 -81734616 + AluJo SINE Alu 1 290 -22 780 193 29 167 chr11 67048878 67049184 -81734288 + L1MD3 LINE L1 7732 7995 0 2053 91 10 30 chr11 67049192 67049489 -81733983 - AluSg SINE Alu -19 291 1 1465 175 0 8 chr11 67049590 67049841 -81733631 + AluJb SINE Alu 26 274 -38 432 0 0 0 chr11 67049843 67049891 -81733581 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 1446 169 17 37 chr11 67049909 67050204 -81733268 + AluJo SINE Alu 1 289 -23 2205 97 10 3 chr11 67050234 67050542 -81732930 - AluSp SINE Alu -3 310 1 1402 151 82 56 chr11 67050728 67050839 -81732633 + AluJo SINE Alu 1 108 -204 1962 114 7 3 chr11 67050839 67051128 -81732344 + AluSc SINE Alu 1 290 -19 1402 151 82 56 chr11 67051128 67051320 -81732152 + AluJo SINE Alu 108 312 0 182 282 136 55 chr11 67051445 67051555 -81731917 - L2 LINE L2 -9 3263 3145 2114 144 45 106 chr11 67051694 67052117 -81731355 + MLT1D LTR MaLR 44 434 -71 1623 125 83 38 chr11 67052117 67052406 -81731066 - AluJb SINE Alu -10 302 1 2114 144 45 106 chr11 67052406 67052474 -81730998 + MLT1D LTR MaLR 434 505 0 317 248 60 43 chr11 67052502 67052619 -81730853 - LTR67 LTR ERVL -11 546 428 2119 113 0 7 chr11 67053739 67054040 -81729432 + AluSx SINE Alu 1 299 -13 1815 144 0 26 chr11 67054217 67054522 -81728950 - AluJb SINE Alu -2 310 14 217 301 89 16 chr11 67055342 67055465 -81728007 + L2 LINE L2 3182 3313 0 2213 99 3 0 chr11 67055682 67055984 -81727488 + AluSq SINE Alu 1 303 -10 1851 118 50 0 chr11 67055984 67056262 -81727210 + AluSq SINE Alu 1 293 -20 2010 124 14 0 chr11 67057673 67057964 -81725508 + AluSx SINE Alu 1 295 -17 1998 143 3 0 chr11 67059043 67059343 -81724129 + AluSx SINE Alu 1 301 -11 2208 99 0 7 chr11 67062380 67062683 -81720789 + AluSx SINE Alu 1 301 -11 2400 75 0 0 chr11 67063357 67063665 -81719807 - AluY SINE Alu -3 308 1 1153 167 77 13 chr11 67065403 67065427 -81718045 - L1MB7 LINE L1 -31 6153 6132 2141 87 0 0 chr11 67065427 67065703 -81717769 - AluSx SINE Alu -32 280 5 1153 167 77 13 chr11 67065703 67065912 -81717560 - L1MB7 LINE L1 -52 6132 5905 1773 132 41 0 chr11 67065917 67066183 -81717289 - AluSq SINE Alu -19 294 18 639 96 0 0 chr11 67066183 67066266 -81717206 - AluS SINE Alu -228 84 2 2056 106 3 0 chr11 67066287 67066597 -81716875 - AluSx SINE Alu 0 311 1 952 196 111 0 chr11 67066597 67066832 -81716640 - L1MB7 LINE L1 -292 5892 5632 261 325 0 12 chr11 67066852 67066935 -81716537 + GA-rich Low_complexity Low_complexity 5 86 0 1622 158 63 0 chr11 67068442 67068726 -81714746 - AluJb SINE Alu -10 302 1 2398 70 0 0 chr11 67068776 67069077 -81714395 + AluY SINE Alu 1 301 -10 914 188 0 0 chr11 67069094 67069248 -81714224 + AluSg/x SINE Alu 140 293 -19 379 213 75 0 chr11 67069365 67069459 -81714013 + L2 LINE L2 3193 3293 -20 198 357 70 42 chr11 67069608 67069751 -81713721 - L2 LINE L2 -64 3249 3103 849 182 0 0 chr11 67069870 67070186 -81713286 + (TCCA)n Simple_repeat Simple_repeat 1 316 0 1220 310 24 63 chr11 67070968 67071243 -81712229 + L1MC4a LINE L1 5343 5584 -2224 965 163 0 41 chr11 67071243 67071415 -81712057 + FRAM SINE Alu 1 165 -1 1220 310 24 63 chr11 67071415 67071729 -81711743 + L1MC4a LINE L1 5584 5909 -1899 1994 136 0 34 chr11 67072000 67072323 -81711149 - AluSx SINE Alu 0 312 1 1605 153 89 0 chr11 67072360 67072641 -81710831 + AluJb SINE Alu 1 306 -6 2183 84 0 0 chr11 67072662 67072978 -81710494 - AluSx SINE Alu 0 316 1 977 230 117 8 chr11 67073121 67073369 -81710103 - MLT1K LTR MaLR -17 571 297 222 336 131 5 chr11 67073580 67073794 -81709678 + L2 LINE L2 2820 3060 -212 2323 76 0 13 chr11 67075118 67075433 -81708039 - AluY SINE Alu 0 311 1 2209 107 3 0 chr11 67075433 67075731 -81707741 - AluSx SINE Alu -13 299 1 188 382 67 0 chr11 67076822 67076911 -81706561 - MIR3 SINE MIR -48 160 66 211 225 39 20 chr11 67077078 67077136 -81706336 + MIR SINE MIR 95 146 -62 1665 178 34 131 chr11 67077427 67077533 -81705939 - MLT1D LTR MaLR 0 505 390 2270 103 0 0 chr11 67077533 67077834 -81705638 + AluSx SINE Alu 1 301 -11 1665 178 34 131 chr11 67077834 67078038 -81705434 - MLT1D LTR MaLR -115 390 168 2080 114 0 26 chr11 67078038 67078344 -81705128 - AluSg SINE Alu -12 298 1 1665 178 34 131 chr11 67078344 67078472 -81705000 - MLT1D LTR MaLR -337 168 29 2296 56 0 94 chr11 67078472 67078813 -81704659 - AluY SINE Alu -2 309 1 1665 178 34 131 chr11 67078813 67078887 -81704585 - MLT1D LTR MaLR -476 29 45 1842 152 13 19 chr11 67078887 67079196 -81704276 - AluJb SINE Alu -5 307 1 1665 178 34 131 chr11 67079196 67079237 -81704235 - MLT1D LTR MaLR -459 46 3 284 278 0 0 chr11 67079565 67079637 -81703835 + L2 LINE L2 3240 3311 -2 2050 73 80 0 chr11 67079705 67079979 -81703493 + AluSp SINE Alu 1 296 -17 352 283 28 9 chr11 67081791 67081897 -81701575 - MIR SINE MIR -63 145 38 310 308 10 0 chr11 67082262 67082366 -81701106 + MIR SINE MIR 35 139 -123 241 214 77 75 chr11 67083195 67083336 -81700136 + MIR SINE MIR 10 138 -70 312 306 58 16 chr11 67083495 67083616 -81699856 - L1ME4a LINE L1 -14 6107 5982 1353 171 21 93 chr11 67083800 67084134 -81699338 - AluSx SINE Alu -1 311 2 2505 47 0 0 chr11 67084137 67084438 -81699034 - AluY SINE Alu -10 301 1 1079 103 0 0 chr11 67084440 67084585 -81698887 - AluSq/x SINE Alu -167 145 1 351 0 0 0 chr11 67084585 67084624 -81698848 + (T)n Simple_repeat Simple_repeat 1 39 0 2011 115 7 7 chr11 67084849 67085144 -81698328 - AluSc SINE Alu -14 295 1 248 260 42 42 chr11 67085689 67085785 -81697687 + MIR3 SINE MIR 77 172 -36 2167 110 0 13 chr11 67085901 67086201 -81697271 + AluSx SINE Alu 1 296 -16 531 303 76 16 chr11 67088232 67088417 -81695055 - L2 LINE L2 0 3313 3118 284 278 33 11 chr11 67088611 67088646 -81694826 + MIR SINE MIR 113 146 -116 2277 102 0 0 chr11 67088646 67088950 -81694522 + AluSg SINE Alu 1 304 -6 284 278 33 11 chr11 67088950 67089004 -81694468 + MIR SINE MIR 146 204 -58 986 151 12 12 chr11 67089021 67089222 -81694250 - AluSg/x SINE Alu 0 312 129 2075 131 0 3 chr11 67089225 67089538 -81693934 - AluSx SINE Alu 0 312 1 297 0 0 0 chr11 67089954 67089987 -81693485 + (TG)n Simple_repeat Simple_repeat 1 33 0 1850 87 28 105 chr11 67089995 67090190 -81693282 - AluSx SINE Alu 0 312 160 1854 98 76 4 chr11 67090190 67090466 -81693006 - AluSc SINE Alu -11 298 3 1850 87 28 105 chr11 67090466 67090615 -81692857 - AluSx SINE Alu -152 160 1 1910 116 34 0 chr11 67090615 67090909 -81692563 - AluSg SINE Alu -6 304 1 920 130 0 0 chr11 67090914 67091045 -81692427 - AluJb SINE Alu -181 131 1 1476 121 48 4 chr11 67091052 67091300 -81692172 - L1MB3 LINE L1 0 6183 5925 1939 136 33 12 chr11 67091302 67091633 -81691839 - L1MB3 LINE L1 -308 5875 5538 2172 119 0 3 chr11 67091641 67091953 -81691519 - AluSq SINE Alu -2 311 1 2332 83 0 3 chr11 67092495 67092795 -81690677 + AluSx SINE Alu 1 299 -13 2259 88 0 16 chr11 67093092 67093398 -81690074 + AluSx SINE Alu 1 301 -11 1981 106 33 0 chr11 67093632 67093905 -81689567 + AluSq SINE Alu 13 294 -19 1383 175 39 32 chr11 67093924 67094209 -81689263 + AluJo SINE Alu 3 289 -23 793 201 7 7 chr11 67094226 67094370 -81689102 + AluJb SINE Alu 132 275 -37 2296 99 0 0 chr11 67094406 67094718 -81688754 + AluSx SINE Alu 1 312 0 2175 89 17 3 chr11 67094832 67095134 -81688338 + AluSg SINE Alu 1 306 -4 528 338 64 19 chr11 67095595 67095861 -81687611 - ERVL LTR ERVL -615 5149 4872 2149 114 3 0 chr11 67095979 67096287 -81687185 - AluSx SINE Alu -3 309 1 479 236 64 56 chr11 67096287 67096406 -81687066 + L1ME3A LINE L1 5700 5817 -353 638 183 122 0 chr11 67096406 67096521 -81686951 + FLAM_C SINE Alu 2 130 -3 1231 199 39 62 chr11 67096531 67096637 -81686835 + AluJo SINE Alu 2 109 -193 2255 93 0 40 chr11 67096637 67096960 -81686512 - AluSg SINE Alu 0 310 1 1231 199 39 62 chr11 67096960 67097160 -81686312 + AluJo SINE Alu 109 301 -1 479 236 64 56 chr11 67097160 67097402 -81686070 + L1ME3A LINE L1 5825 6109 -61 549 106 12 0 chr11 67097405 67097490 -81685982 + L1MA3 LINE L1 6220 6305 0 834 39 0 0 chr11 67097513 67097615 -81685857 + AluSp/q SINE Alu 201 302 -11 471 208 10 0 chr11 67097698 67097794 -81685678 + HsTC2 DNA Tc2 1443 1539 -359 1734 97 39 87 chr11 67097797 67098126 -81685346 + AluSq SINE Alu 1 313 0 406 165 61 35 chr11 67098126 67098152 -81685320 - L1ME LINE L1 -461 5709 5685 2252 83 0 13 chr11 67098152 67098454 -81685018 - AluY SINE Alu -13 298 1 871 173 0 0 chr11 67098462 67098595 -81684877 - FLAM_A SINE Alu 0 133 1 406 165 61 35 chr11 67098595 67098674 -81684798 - L1ME LINE L1 -491 5679 5592 804 107 0 0 chr11 67098677 67098798 -81684674 + (TA)n Simple_repeat Simple_repeat 1 121 0 1124 143 0 16 chr11 67098799 67098981 -81684491 - AluJo/FRAM SINE Alu 0 312 134 2550 29 0 10 chr11 67098981 67099308 -81684164 - AluY SINE Alu 0 311 1 2216 98 3 3 chr11 67101513 67101819 -81681653 - AluSq SINE Alu -7 306 1 1839 158 10 14 chr11 67101916 67102213 -81681259 + AluSx SINE Alu 1 296 -16 2148 101 10 0 chr11 67102220 67102516 -81680956 + AluSc SINE Alu 5 303 -6 1934 88 77 0 chr11 67102516 67102789 -81680683 + AluSg SINE Alu 1 295 -15 1928 99 43 53 chr11 67102876 67103180 -81680292 + AluSg SINE Alu 1 301 -9 333 0 0 0 chr11 67103180 67103217 -81680255 + (TA)n Simple_repeat Simple_repeat 2 38 0 * 441 0 0 0 chr11 67103216 67103265 -81680207 + (GA)n Simple_repeat Simple_repeat 2 50 0 1457 185 0 100 chr11 67103324 67103507 -81679965 - AluJb SINE Alu -5 297 160 2282 80 13 6 chr11 67103507 67103818 -81679654 - AluSp SINE Alu 0 313 1 1457 185 0 100 chr11 67103818 67103964 -81679508 - AluJb SINE Alu -142 160 1 218 259 19 0 chr11 67104634 67104688 -81678784 - MIR3 SINE MIR -39 169 115 807 176 8 0 chr11 67104844 67104975 -81678497 + FLAM_A SINE Alu 1 132 -1 281 204 20 30 chr11 67105429 67105609 -81677863 - L1MC4a LINE L1 -339 5835 5762 377 209 81 0 chr11 67105637 67105723 -81677749 - LTR16C LTR ERVL -14 477 385 212 381 75 22 chr11 67106852 67106986 -81676486 - L2 LINE L2 -32 3240 3100 29 21 0 21 chr11 67107514 67107545 -81675927 + AT_rich Low_complexity Low_complexity 1 32 -14 1671 149 0 33 chr11 67107545 67107821 -81675651 + AluJo SINE Alu 1 267 -45 29 21 0 21 chr11 67107821 67107836 -81675636 + AT_rich Low_complexity Low_complexity 32 46 0 404 215 21 0 chr11 67107838 67107931 -81675541 - L1MC4 LINE L1 -31 8011 7917 1145 152 20 25 chr11 67107965 67108162 -81675310 + AluJo SINE Alu 86 281 -31 317 244 110 8 chr11 67108319 67108446 -81675026 - MIR SINE MIR -31 231 92 2090 72 72 7 chr11 67108448 67108727 -81674745 + AluY SINE Alu 1 297 -14 2335 88 3 0 chr11 67108735 67109041 -81674431 + AluSp SINE Alu 1 307 -6 646 299 129 32 chr11 67112239 67112716 -81670756 - L2 LINE L2 -14 3299 2869 2182 89 4 0 chr11 67112716 67113031 -81670441 - AluSx SINE Alu 0 317 2 230 56 28 0 chr11 67113031 67113067 -81670405 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1559 168 14 25 chr11 67113067 67113353 -81670119 - AluJo SINE Alu -29 283 1 2101 125 26 0 chr11 67113363 67113666 -81669806 - AluSq SINE Alu -2 311 1 646 299 129 32 chr11 67113666 67113732 -81669740 - L2 LINE L2 -452 2861 2649 1834 143 7 4 chr11 67113732 67114012 -81669460 + AluJo SINE Alu 11 291 -21 1822 157 7 3 chr11 67114018 67114304 -81669168 + AluJo SINE Alu 3 289 -23 189 0 0 0 chr11 67114330 67114351 -81669121 + (A)n Simple_repeat Simple_repeat 1 21 0 2477 43 0 3 chr11 67115233 67115533 -81667939 + AluY SINE Alu 1 299 -12 194 0 0 37 chr11 67115795 67115822 -81667650 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1965 135 6 28 chr11 67116082 67116401 -81667071 - AluJb SINE Alu 0 312 1 1611 165 53 30 chr11 67116432 67116735 -81666737 + AluSx SINE Alu 1 310 -2 337 157 14 14 chr11 67116740 67116810 -81666662 + MER58 DNA MER1_type 2347 2416 -4 190 318 45 68 chr11 67117054 67117186 -81666286 + MER5B DNA MER1_type 20 148 -30 22 0 0 0 chr11 67119098 67119120 -81664352 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr11 67120519 67120541 -81662931 + GC_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr11 67120694 67120729 -81662743 + GC_rich Low_complexity Low_complexity 1 35 0 196 353 60 0 chr11 67123889 67124039 -81659433 - L2 LINE L2 -301 2971 2813 2261 96 6 6 chr11 67124257 67124570 -81658902 + AluSq SINE Alu 1 313 0 2296 101 0 0 chr11 67124640 67124946 -81658526 + AluSx SINE Alu 1 306 -6 2274 95 3 0 chr11 67124952 67125256 -81658216 + AluSx SINE Alu 3 307 -5 1077 230 81 113 chr11 67125261 67125926 -81657546 + MER76 LTR ERV 12 655 -33 323 309 66 13 chr11 67125930 67126082 -81657390 - L3b LINE CR1 -310 1273 1114 2216 90 0 7 chr11 67126086 67126418 -81657054 - AluSx SINE Alu 0 330 1 2126 119 3 3 chr11 67126420 67126722 -81656750 - AluSp SINE Alu -11 302 1 2303 84 10 0 chr11 67126730 67127040 -81656432 - AluSp SINE Alu 0 313 1 2316 77 3 3 chr11 67127076 67127373 -81656099 + AluSp SINE Alu 1 297 -16 255 380 16 16 chr11 67127585 67127706 -81655766 - L2 LINE L2 0 3313 3193 2156 108 3 16 chr11 67127719 67128035 -81655437 - AluSp SINE Alu -1 312 1 242 286 111 19 chr11 67128199 67128383 -81655089 - L2 LINE L2 -309 2963 2751 243 0 0 0 chr11 67128393 67128420 -81655052 + (T)n Simple_repeat Simple_repeat 1 27 0 2041 115 3 35 chr11 67128470 67128783 -81654689 - AluSg SINE Alu -7 303 1 1563 175 22 45 chr11 67128806 67129120 -81654352 - AluJo SINE Alu -5 307 1 2167 78 3 3 chr11 67129125 67129437 -81654035 - AluSx SINE Alu 0 312 1 285 252 0 90 chr11 67129439 67129550 -81653922 - L2 LINE L2 -600 2714 2614 206 219 0 0 chr11 67129921 67129962 -81653510 - MIR SINE MIR -6 256 216 237 65 0 0 chr11 67129962 67129993 -81653479 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1865 128 35 3 chr11 67129995 67130284 -81653188 - AluSq SINE Alu -15 298 1 920 179 6 0 chr11 67130284 67130452 -81653020 - L1M2 LINE L1 -651 5661 5493 2514 58 0 0 chr11 67130452 67130760 -81652712 - AluY SINE Alu -3 308 1 2537 12 0 73 chr11 67130765 67131093 -81652379 - AluY SINE Alu -7 304 1 1066 68 0 0 chr11 67131095 67131227 -81652245 - AluY SINE Alu -179 132 1 724 182 52 18 chr11 67131227 67131364 -81652108 - L1MC/D LINE L1 -827 5464 5332 2155 109 7 3 chr11 67131364 67131666 -81651806 - AluSq SINE Alu 0 313 11 724 182 52 18 chr11 67131666 67131732 -81651740 - L1MC/D LINE L1 -959 5332 5270 2321 100 0 3 chr11 67131804 67132114 -81651358 + AluSx SINE Alu 2 310 -2 380 280 111 42 chr11 67132253 67132585 -81650887 - L1MEd LINE L1 -5667 452 98 779 150 0 0 chr11 67132590 67132710 -81650762 - FRAM SINE Alu -12 164 45 2241 101 35 3 chr11 67132713 67133080 -81650392 - LTR15 LTR ERV1 -6 487 109 2350 59 0 16 chr11 67133080 67133384 -81650088 - AluY SINE Alu -12 299 1 258 207 100 107 chr11 67133575 67133595 -81649877 - L2 LINE L2 0 3272 3253 1635 166 6 56 chr11 67133595 67133777 -81649695 - AluJb SINE Alu -9 303 142 2248 112 3 6 chr11 67133777 67134090 -81649382 - AluSx SINE Alu 0 312 1 1635 166 6 56 chr11 67134090 67134226 -81649246 - AluJb SINE Alu -170 142 1 258 207 100 107 chr11 67134226 67134264 -81649208 - L2 LINE L2 -19 3253 3216 2427 49 0 0 chr11 67134264 67134578 -81648894 - AluY SINE Alu 0 314 1 258 207 100 107 chr11 67134578 67134657 -81648815 - L2 LINE L2 -56 3216 3134 546 246 49 49 chr11 67134728 67134752 -81648720 + MER5A DNA MER1_type 1 24 -165 180 0 0 0 chr11 67134752 67134772 -81648700 + (CAG)n Simple_repeat Simple_repeat 1 20 0 546 246 49 49 chr11 67134772 67134930 -81648542 + MER5A DNA MER1_type 23 183 -6 259 287 175 42 chr11 67134938 67135018 -81648454 - L2 LINE L2 -225 3047 2979 1644 149 9 81 chr11 67135018 67135162 -81648310 + AluJb SINE Alu 1 154 -158 1917 103 18 4 chr11 67135162 67135435 -81648037 + AluSq SINE Alu 1 277 -36 207 0 0 0 chr11 67135439 67135462 -81648010 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2127 103 7 0 chr11 67135466 67135786 -81647686 + AluSp SINE Alu 1 322 0 1644 149 9 81 chr11 67135786 67135950 -81647522 + AluJb SINE Alu 160 298 -14 259 287 175 42 chr11 67135950 67136012 -81647460 - L2 LINE L2 -293 2979 2886 2260 85 0 3 chr11 67136135 67136428 -81647044 + AluSg1 SINE Alu 1 292 -17 906 121 0 8 chr11 67136498 67136622 -81646850 + FLAM_C SINE Alu 1 123 -10 183 343 98 10 chr11 67136756 67136858 -81646614 - L2 LINE L2 -976 2338 2228 2156 110 0 0 chr11 67137330 67137629 -81645843 - AluY SINE Alu -12 299 1 2062 132 0 0 chr11 67137632 67137927 -81645545 - AluSx SINE Alu -17 295 1 323 139 0 76 chr11 67138339 67138418 -81645054 - LTR19C LTR ERV1 -87 692 620 1860 110 60 11 chr11 67138684 67138966 -81644506 + AluSx SINE Alu 1 296 -16 744 206 5 75 chr11 67139165 67139308 -81644164 - MER5A DNA MER1_type -4 185 58 1729 186 0 3 chr11 67139308 67139603 -81643869 - AluJb SINE Alu -18 294 1 744 206 5 75 chr11 67139603 67139658 -81643814 - MER5A DNA MER1_type -131 58 1 963 102 0 0 chr11 67139754 67139881 -81643591 + AluSq/x SINE Alu 11 137 -175 308 333 33 27 chr11 67140059 67140209 -81643263 + MIR SINE MIR 4 154 -108 1804 185 3 0 chr11 67140410 67140712 -81642760 + AluJo SINE Alu 10 312 0 311 257 156 9 chr11 67140921 67141030 -81642442 - L2 LINE L2 -6 3266 3142 201 182 91 15 chr11 67141337 67141403 -81642069 - L2 LINE L2 -525 2789 2719 2303 80 0 26 chr11 67141508 67141821 -81641651 + AluY SINE Alu 1 305 -6 1939 134 7 3 chr11 67146862 67147154 -81636318 - AluJb SINE Alu -19 293 1 854 139 0 0 chr11 67147158 67147280 -81636192 - FLAM_C SINE Alu -17 126 5 1681 100 52 12 chr11 67147283 67147534 -81635938 - AluJo SINE Alu -1 311 51 545 283 172 6 chr11 67148347 67148783 -81634689 + L2 LINE L2 2742 3271 -1 2381 90 0 0 chr11 67149202 67149514 -81633958 + AluSx SINE Alu 1 312 0 729 151 0 0 chr11 67149522 67149641 -81633831 + LTR8 LTR ERV1 573 691 0 212 229 55 73 chr11 67150004 67150113 -81633359 + L2 LINE L2 2890 2996 -276 1509 175 14 28 chr11 67150435 67150721 -81632751 - AluJo SINE Alu -13 299 18 2329 44 7 7 chr11 67151528 67151823 -81631649 - AluY SINE Alu -16 295 1 476 205 22 16 chr11 67151830 67151948 -81631524 - MIR3 SINE MIR -23 185 88 23 0 0 0 chr11 67152265 67152288 -81631184 + GC_rich Low_complexity Low_complexity 1 23 0 644 132 0 0 chr11 67153121 67153212 -81630260 + AluJ/FLAM SINE Alu 12 102 -210 2418 80 0 0 chr11 67153254 67153565 -81629907 - AluY SINE Alu 0 311 1 2186 97 7 7 chr11 67153609 67153907 -81629565 + AluSp SINE Alu 1 298 -15 231 237 32 4 chr11 67153907 67153968 -81629504 - MIR SINE MIR -38 170 102 271 327 141 19 chr11 67154161 67154317 -81629155 - MIR SINE MIR -79 183 9 2304 105 0 0 chr11 67157233 67157538 -81625934 - AluSx SINE Alu -7 305 1 240 366 119 0 chr11 67157573 67157707 -81625765 + MIR3 SINE MIR 35 184 -24 543 291 109 20 chr11 67158471 67158800 -81624672 - L2 LINE L2 -164 3149 2794 303 279 32 0 chr11 67159051 67159154 -81624318 + MIR SINE MIR 44 157 -51 2048 138 0 0 chr11 67160692 67160988 -81622484 + AluSx SINE Alu 1 296 -16 2228 82 14 0 chr11 67160989 67161282 -81622190 + AluSp SINE Alu 2 298 -15 253 313 61 15 chr11 67163040 67163171 -81620301 - L2 LINE L2 -6 3307 3171 687 253 201 35 chr11 67163172 67163440 -81620032 - L2 LINE L2 -636 2678 2456 1693 128 52 14 chr11 67163440 67163593 -81619879 - AluJb SINE Alu -13 299 153 2088 101 44 0 chr11 67163593 67163890 -81619582 - AluSq SINE Alu -3 310 1 1693 128 52 14 chr11 67163890 67164024 -81619448 - AluJb SINE Alu -159 153 1 687 253 201 35 chr11 67164024 67164213 -81619259 - L2 LINE L2 -858 2456 2145 256 254 0 0 chr11 67164454 67164517 -81618955 - L2 LINE L2 -1886 1428 1366 2353 73 0 7 chr11 67164721 67165022 -81618450 - AluY SINE Alu -12 299 1 197 139 10 59 chr11 67167031 67167132 -81616340 + CT-rich Low_complexity Low_complexity 3 98 0 195 42 0 0 chr11 67167543 67167567 -81615905 + (T)n Simple_repeat Simple_repeat 1 24 0 2097 247 176 32 chr11 67167580 67167790 -81615682 - L1M4 LINE L1 -1029 5117 4939 1947 134 0 16 chr11 67167790 67168097 -81615375 + AluSx SINE Alu 1 302 -10 2097 247 176 32 chr11 67168097 67168626 -81614846 - L1M4 LINE L1 -1207 4939 4488 1464 140 103 15 chr11 67168626 67168898 -81614574 - AluJo SINE Alu -13 299 4 2406 82 0 0 chr11 67168900 67169206 -81614266 - AluSx SINE Alu -6 306 1 2097 247 176 32 chr11 67169206 67169496 -81613976 - L1M4 LINE L1 -1658 4488 3935 235 247 32 43 chr11 67169885 67169978 -81613494 + L2 LINE L2 3168 3259 -13 2012 92 4 7 chr11 67171067 67171371 -81612101 + AluSx SINE Alu 5 307 0 1548 161 3 25 chr11 67171441 67171726 -81611746 + AluJo SINE Alu 1 279 -33 30 0 0 0 chr11 67171726 67171756 -81611716 + AT_rich Low_complexity Low_complexity 1 30 0 1983 104 7 17 chr11 67171764 67171918 -81611554 - AluY SINE Alu -25 286 135 2386 67 0 3 chr11 67171918 67172217 -81611255 - AluY SINE Alu -13 298 1 1983 104 7 17 chr11 67172217 67172351 -81611121 - AluY SINE Alu -176 135 1 2059 102 3 10 chr11 67172381 67172700 -81610772 + AluSp SINE Alu 1 313 0 736 214 157 9 chr11 67172704 67172933 -81610539 + L1MD3 LINE L1 7730 7992 -3 2051 103 4 0 chr11 67172952 67173266 -81610206 - AluSx SINE Alu 0 315 1 2219 50 47 27 chr11 67173324 67173621 -81609851 + AluY SINE Alu 1 303 -8 2408 65 3 0 chr11 67173783 67174090 -81609382 - AluSp SINE Alu -5 308 1 469 320 78 41 chr11 67174123 67174337 -81609135 - L1ME4a LINE L1 -286 5835 5602 1612 180 14 3 chr11 67174337 67174626 -81608846 - AluJb SINE Alu -20 292 1 469 320 78 41 chr11 67174626 67174755 -81608717 - L1ME4a LINE L1 -519 5602 5479 2143 102 7 3 chr11 67174809 67175103 -81608369 - AluSx SINE Alu -17 295 1 1622 170 44 0 chr11 67175213 67175507 -81607965 + AluJo SINE Alu 1 307 -5 1400 176 52 8 chr11 67175526 67175793 -81607679 + AluJb SINE Alu 14 292 -20 954 114 8 0 chr11 67175800 67175932 -81607540 + AluSg SINE Alu 1 133 -177 2150 96 3 3 chr11 67175932 67176225 -81607247 + AluSc SINE Alu 1 293 -16 2491 54 0 10 chr11 67176225 67176539 -81606933 + AluY SINE Alu 1 311 0 1044 208 65 23 chr11 67176545 67176805 -81606667 - L1MC3 LINE L1 -105 7680 7410 2171 90 30 0 chr11 67178703 67179004 -81604468 - AluSg SINE Alu 0 310 1 1643 143 47 27 chr11 67179873 67180174 -81603298 + AluJb SINE Alu 1 307 -5 2240 86 7 0 chr11 67180182 67180483 -81602989 + AluSp SINE Alu 1 303 -10 1581 215 33 23 chr11 67180486 67180882 -81602590 - MLT1C LTR MaLR -67 400 1 231 271 52 0 chr11 67184640 67184736 -81598736 - L2 LINE L2 -255 3058 2958 1909 113 19 35 chr11 67185378 67185689 -81597783 + AluSx SINE Alu 1 306 -6 1313 141 12 55 chr11 67186330 67186586 -81596886 - AluJo SINE Alu -31 281 37 194 0 39 0 chr11 67187519 67187545 -81595927 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 387 289 76 64 chr11 67194704 67195033 -81588439 - L1ME4a LINE L1 -251 5870 5538 644 290 116 36 chr11 67195132 67195198 -81588274 - L1ME4a LINE L1 -744 5402 5343 345 47 0 0 chr11 67195198 67195241 -81588231 + (TG)n Simple_repeat Simple_repeat 1 43 0 644 290 116 36 chr11 67195241 67195581 -81587891 - L1ME4a LINE L1 -803 5343 4959 318 284 87 2 chr11 67195776 67195880 -81587592 + MIR SINE MIR 51 161 -47 368 329 185 34 chr11 67196279 67196604 -81586868 - L1ME4a LINE L1 -293 5828 5455 4313 172 38 40 chr11 67196607 67197991 -81585481 - L1MB2 LINE L1 -9 6162 4984 3317 123 41 30 chr11 67198412 67198948 -81584524 - L1PB3 LINE L1 0 6154 5613 497 235 0 0 chr11 67199465 67199567 -81583905 - L1PB3 LINE L1 -3 6151 6050 238 316 21 0 chr11 67199818 67199913 -81583559 - L1ME LINE L1 -335 5829 5733 627 290 117 29 chr11 67200126 67200512 -81582960 - L1MC4a LINE L1 -1875 5933 5514 340 313 52 47 chr11 67200948 67201274 -81582198 - L1ME4a LINE L1 -34 6087 5688 652 321 136 13 chr11 67202330 67202779 -81580693 - L1MC4a LINE L1 -1896 5912 5409 528 59 0 0 chr11 67202902 67202970 -81580502 + (TA)n Simple_repeat Simple_repeat 1 68 0 4082 193 16 17 chr11 67204109 67205103 -81578369 - L1MB7 LINE L1 -41 6143 5153 1653 158 49 11 chr11 67205119 67205403 -81578069 + AluSx SINE Alu 1 295 -17 837 167 0 0 chr11 67205697 67205823 -81577649 + AluJo SINE Alu 5 130 -172 301 318 12 0 chr11 67205843 67205928 -81577544 - L1MC4a LINE L1 -2202 3944 3859 1018 122 50 44 chr11 67206032 67206213 -81577259 + AluJo SINE Alu 131 312 0 1946 91 7 15 chr11 67206319 67206593 -81576879 + AluSg SINE Alu 39 310 0 405 289 39 33 chr11 67206689 67206869 -81576603 + MIR SINE MIR 13 193 -69 791 153 0 29 chr11 67207046 67207183 -81576289 - FLAM_C SINE Alu 0 133 1 497 319 52 55 chr11 67207223 67207533 -81575939 - L1MC4a LINE L1 -2759 3387 3079 2309 100 3 0 chr11 67208322 67208613 -81574859 + AluSg SINE Alu 4 293 -17 513 0 0 0 chr11 67209982 67210039 -81573433 + (TG)n Simple_repeat Simple_repeat 2 58 0 188 180 48 21 chr11 67210107 67210183 -81573289 + MIR SINE MIR 61 136 -72 207 188 0 21 chr11 67211102 67211150 -81572322 + GA-rich Low_complexity Low_complexity 4 50 0 263 221 0 116 chr11 67212775 67212822 -81570650 + MIR SINE MIR 102 134 -128 1044 158 0 0 chr11 67212822 67212987 -81570485 + FRAM SINE Alu 1 165 -1 263 221 0 116 chr11 67212987 67213034 -81570438 + MIR SINE MIR 134 185 -77 2216 84 35 11 chr11 67213085 67213372 -81570100 + AluSx SINE Alu 5 298 -14 839 198 145 64 chr11 67213380 67213511 -81569961 - MLT1A1 LTR MaLR -59 306 187 2134 120 3 17 chr11 67213511 67213811 -81569661 - AluSc SINE Alu -13 296 1 839 198 145 64 chr11 67213811 67213962 -81569510 - MLT1A1 LTR MaLR -178 187 1 2379 92 0 0 chr11 67215384 67215679 -81567793 - AluY SINE Alu -16 295 1 2184 114 0 3 chr11 67215682 67215991 -81567481 - AluSx SINE Alu 0 312 1 21 0 0 0 chr11 67215991 67216012 -81567460 + AT_rich Low_complexity Low_complexity 1 21 0 747 31 0 54 chr11 67216027 67216156 -81567316 + (TCTCCC)n Simple_repeat Simple_repeat 3 124 0 186 263 35 0 chr11 67216404 67216461 -81567011 + L2 LINE L2 1224 1282 -2032 2317 98 13 3 chr11 67216462 67216769 -81566703 - AluSq SINE Alu 0 313 4 954 79 0 0 chr11 67216771 67216885 -81566587 - AluSq/x SINE Alu -175 137 24 3887 261 78 25 chr11 67216896 67217352 -81566120 + L2 LINE L2 1279 1709 -1605 2309 93 0 0 chr11 67217352 67217642 -81565830 + AluSc SINE Alu 1 290 -19 3887 261 78 25 chr11 67217642 67217882 -81565590 + L2 LINE L2 1709 1935 -1379 1844 164 17 3 chr11 67217882 67218180 -81565292 - AluJb SINE Alu -10 302 1 3887 261 78 25 chr11 67218180 67218809 -81564663 + L2 LINE L2 1935 2676 -638 295 273 191 9 chr11 67218796 67218906 -81564566 + L2 LINE L2 3179 3308 -5 * 523 262 154 19 chr11 67219188 67219329 -81564143 + MIR SINE MIR 20 141 -121 2290 96 7 0 chr11 67219329 67219621 -81563851 + AluSg SINE Alu 1 294 -16 523 262 154 19 chr11 67219621 67219693 -81563779 + MIR SINE MIR 141 262 0 2021 127 7 7 chr11 67220066 67220366 -81563106 + AluSx SINE Alu 1 300 -12 194 0 0 37 chr11 67220628 67220655 -81562817 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2059 135 6 28 chr11 67220915 67221234 -81562238 - AluJb SINE Alu 0 312 1 1561 166 63 36 chr11 67221265 67221567 -81561905 + AluSx SINE Alu 1 310 -2 365 157 14 14 chr11 67221572 67221642 -81561830 + MER58 DNA MER1_type 2347 2416 -4 315 270 35 61 chr11 67221903 67222018 -81561454 - MER5B DNA MER1_type -36 142 31 22 0 0 0 chr11 67223930 67223952 -81559520 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chr11 67225180 67225207 -81558265 + (A)n Simple_repeat Simple_repeat 1 27 0 180 267 92 23 chr11 67225264 67225395 -81558077 + L2 LINE L2 2818 2957 -315 2244 110 3 16 chr11 67225565 67225882 -81557590 + AluSp SINE Alu 1 313 0 220 380 16 16 chr11 67225895 67226016 -81557456 + L2 LINE L2 3193 3313 0 2428 78 3 3 chr11 67226228 67226524 -81556948 - AluSp SINE Alu -17 296 1 2424 84 10 0 chr11 67226560 67226870 -81556602 + AluSp SINE Alu 1 313 0 1969 128 7 10 chr11 67226878 67227176 -81556296 + AluSq SINE Alu 1 297 -16 5842 179 29 7 chr11 67227180 67228068 -81555404 + Charlie8 DNA MER1_type 151 1069 -1348 2294 83 23 20 chr11 67228068 67228370 -81555102 + AluY SINE Alu 1 303 -8 5842 179 29 7 chr11 67228370 67228564 -81554908 + Charlie8 DNA MER1_type 1069 1257 -1160 2234 105 0 7 chr11 67228566 67228872 -81554600 + AluSx SINE Alu 1 304 -8 1341 124 5 0 chr11 67228872 67229057 -81554415 + AluSp SINE Alu 108 293 -20 2164 124 14 0 chr11 67230468 67230759 -81552713 + AluSx SINE Alu 1 295 -17 2087 143 3 3 chr11 67231838 67232139 -81551333 + AluSx SINE Alu 1 301 -11 2342 99 0 7 chr11 67235176 67235479 -81547993 + AluSx SINE Alu 1 301 -11 2543 75 0 0 chr11 67236153 67236461 -81547011 - AluY SINE Alu -3 308 1 1148 167 77 13 chr11 67238199 67238223 -81545249 - L1MB7 LINE L1 -31 6153 6132 2272 87 0 0 chr11 67238223 67238499 -81544973 - AluSx SINE Alu -32 280 5 1148 167 77 13 chr11 67238499 67238708 -81544764 - L1MB7 LINE L1 -52 6132 5905 1886 129 42 0 chr11 67238715 67238979 -81544493 - AluSq SINE Alu -21 292 18 609 96 0 0 chr11 67238979 67239062 -81544410 - AluS SINE Alu -228 84 2 2186 106 3 0 chr11 67239083 67239393 -81544079 - AluSx SINE Alu 0 311 1 938 196 111 0 chr11 67239393 67239628 -81543844 - L1MB7 LINE L1 -292 5892 5632 261 325 0 12 chr11 67239648 67239731 -81543741 + GA-rich Low_complexity Low_complexity 5 86 0 1710 162 63 0 chr11 67241238 67241522 -81541950 - AluJb SINE Alu -10 302 1 2551 42 0 75 chr11 67241572 67241906 -81541566 + AluY SINE Alu 1 309 -2 1008 167 70 94 chr11 67241906 67242034 -81541438 + MLT1D LTR MaLR 88 218 -287 2220 104 0 27 chr11 67242034 67242332 -81541140 + AluSg SINE Alu 1 290 -20 1008 167 70 94 chr11 67242332 67242534 -81540938 + MLT1D LTR MaLR 218 402 -103 1626 148 31 82 chr11 67242544 67242712 -81540760 - AluSq SINE Alu -11 302 156 1981 98 76 4 chr11 67242712 67242988 -81540484 - AluSc SINE Alu -11 298 3 1626 148 31 82 chr11 67242988 67243137 -81540335 - AluSq SINE Alu -157 156 1 2033 116 34 0 chr11 67243137 67243431 -81540041 - AluSg SINE Alu -6 304 1 979 130 0 0 chr11 67243436 67243567 -81539905 - AluJb SINE Alu -181 131 1 1362 121 48 4 chr11 67243574 67243822 -81539650 - L1MB3 LINE L1 0 6183 5925 1944 136 33 12 chr11 67243824 67244155 -81539317 - L1MB3 LINE L1 -308 5875 5538 2303 119 0 3 chr11 67244163 67244475 -81538997 - AluSq SINE Alu -2 311 1 2433 83 0 7 chr11 67245017 67245317 -81538155 + AluSx SINE Alu 2 299 -13 2354 88 0 20 chr11 67245614 67245920 -81537552 + AluSx SINE Alu 1 300 -12 2071 106 33 4 chr11 67246157 67246431 -81537041 + AluSq SINE Alu 13 294 -19 1428 177 42 35 chr11 67246450 67246733 -81536739 + AluJo SINE Alu 3 287 -25 717 200 7 14 chr11 67246750 67246895 -81536577 + AluJb SINE Alu 132 275 -37 2438 97 0 0 chr11 67246931 67247241 -81536231 + AluSx SINE Alu 1 310 -2 2308 89 17 3 chr11 67247356 67247658 -81535814 + AluSg SINE Alu 1 306 -4 488 338 64 19 chr11 67248119 67248385 -81535087 - ERVL LTR ERVL -615 5149 4872 2244 111 3 3 chr11 67248505 67248812 -81534660 - AluSx SINE Alu -5 307 1 414 171 24 49 chr11 67248812 67248894 -81534578 + L1ME LINE L1 5700 5771 -399 1205 183 92 18 chr11 67248930 67249159 -81534313 + AluJb SINE Alu 1 246 -66 5050 19 37 0 chr11 67249283 67249821 -81533651 + SVA Other Other 821 1378 -8 731 161 0 0 chr11 67249821 67249939 -81533533 - FLAM_C SINE Alu -15 118 1 1786 154 32 14 chr11 67249939 67250283 -81533189 - L1PA16 LINE L1 0 6166 5817 193 200 296 24 chr11 67250669 67250794 -81532678 - MIR SINE MIR -9 253 95 267 351 43 0 chr11 67250824 67250918 -81532554 - MIR SINE MIR -148 114 17 2422 93 3 0 chr11 67250940 67251240 -81532232 + AluSq SINE Alu 5 305 -8 625 289 134 40 chr11 67254438 67254915 -81528557 - L2 LINE L2 -14 3299 2869 2294 89 4 0 chr11 67254915 67255230 -81528242 - AluSx SINE Alu 0 317 2 188 86 29 0 chr11 67255230 67255265 -81528207 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 1650 168 14 25 chr11 67255266 67255552 -81527920 - AluJo SINE Alu -29 283 1 2205 125 26 0 chr11 67255562 67255865 -81527607 - AluSq SINE Alu -2 311 1 625 289 134 40 chr11 67255865 67255931 -81527541 - L2 LINE L2 -452 2861 2649 1919 143 7 4 chr11 67255931 67256211 -81527261 + AluJo SINE Alu 11 291 -21 1901 157 7 3 chr11 67256217 67256503 -81526969 + AluJo SINE Alu 3 289 -23 2625 34 0 3 chr11 67257430 67257728 -81525744 + AluY SINE Alu 1 297 -14 628 234 105 20 chr11 67257869 67258117 -81525355 + LTR37B LTR ERV1 200 468 0 2157 121 0 10 chr11 67258272 67258577 -81524895 + AluSx SINE Alu 1 302 -10 2014 148 3 6 chr11 67258678 67258989 -81524483 + AluSx SINE Alu 1 310 -2 361 231 0 0 chr11 67258997 67259062 -81524410 - Tigger3(Golem) DNA MER2_type -2964 65 1 306 270 9 18 chr11 67259062 67259173 -81524299 + (TA)n Simple_repeat Simple_repeat 1 110 0 1000 217 0 49 chr11 67259195 67259257 -81524215 + AluJo SINE Alu 77 141 -171 2404 77 0 0 chr11 67259257 67259557 -81523915 + AluSx SINE Alu 1 300 -12 1000 217 0 49 chr11 67259557 67259738 -81523734 + AluJo SINE Alu 141 308 -4 1192 164 0 10 chr11 67259831 67260026 -81523446 - AluJo SINE Alu -31 281 89 2121 107 10 10 chr11 67260039 67260348 -81523124 - AluSc SINE Alu 0 309 1 2369 81 0 3 chr11 67260438 67260736 -81522736 - AluSq SINE Alu -16 297 1 261 0 0 0 chr11 67260825 67260854 -81522618 + (CA)n Simple_repeat Simple_repeat 1 29 0 2210 120 3 0 chr11 67261985 67262294 -81521178 + AluSx SINE Alu 1 310 -2 779 122 0 72 chr11 67262830 67262956 -81520516 + FLAM_C SINE Alu 2 135 -167 195 42 0 0 chr11 67262956 67262980 -81520492 + (TA)n Simple_repeat Simple_repeat 2 25 0 2083 78 10 34 chr11 67262980 67263274 -81520198 - AluSq SINE Alu -26 287 1 779 122 0 72 chr11 67263274 67263285 -81520187 + FLAM_C SINE Alu 120 130 -172 2252 91 0 0 chr11 67263291 67263577 -81519895 - AluSc SINE Alu -23 286 1 24 0 0 0 chr11 67263579 67263603 -81519869 + AT_rich Low_complexity Low_complexity 1 24 0 2166 98 0 7 chr11 67263606 67263901 -81519571 + AluSq SINE Alu 1 293 -20 827 181 50 6 chr11 67263909 67264103 -81519369 + AluJb SINE Alu 134 312 0 486 212 73 0 chr11 67264355 67264506 -81518966 - L1MD2 LINE L1 -25 6334 6173 180 0 0 0 chr11 67264506 67264526 -81518946 + (T)n Simple_repeat Simple_repeat 1 20 0 682 208 149 64 chr11 67264634 67265024 -81518448 - L1M4 LINE L1 -1399 4747 4325 1491 140 103 15 chr11 67265024 67265296 -81518176 - AluJo SINE Alu -13 299 4 2379 91 0 0 chr11 67265298 67265605 -81517867 - AluSp SINE Alu -6 307 1 594 134 0 0 chr11 67265606 67265688 -81517784 - AluS SINE Alu -231 82 1 2027 76 4 0 chr11 67266556 67266818 -81516654 + AluSp SINE Alu 3 265 -48 258 335 146 5 chr11 67266972 67267157 -81516315 - MIR SINE MIR -14 248 38 342 67 0 0 chr11 67267426 67267471 -81516001 + (A)n Simple_repeat Simple_repeat 1 45 0 201 147 0 0 chr11 67268015 67268049 -81515423 + (CTGGGG)n Simple_repeat Simple_repeat 1 34 0 192 328 0 0 chr11 67269917 67269978 -81513494 + MIR SINE MIR 86 146 -62 2070 141 0 0 chr11 67271780 67272085 -81511387 + AluJb SINE Alu 1 305 -7 2134 114 7 7 chr11 67273152 67273450 -81510022 - AluSx SINE Alu -14 298 1 210 263 167 44 chr11 67273650 67273764 -81509708 + MIR SINE MIR 16 143 -119 325 250 30 0 chr11 67274909 67275009 -81508463 - MIR SINE MIR -55 153 51 312 326 15 15 chr11 67275560 67275695 -81507777 - MIR3 SINE MIR -47 161 27 378 282 7 87 chr11 67276442 67276591 -81506881 - MIR SINE MIR -72 190 54 393 333 57 6 chr11 67276979 67277138 -81506334 + MIR SINE MIR 34 200 -62 266 346 118 0 chr11 67277633 67277760 -81505712 + MIR3 SINE MIR 30 171 -37 249 319 133 15 chr11 67280202 67280337 -81503135 + MIR3 SINE MIR 27 177 -31 219 353 70 26 chr11 67280975 67281131 -81502341 + MIR3 SINE MIR 19 181 -27 2293 54 3 27 chr11 67281188 67281483 -81501989 + AluY SINE Alu 1 288 -23 321 308 19 0 chr11 67282346 67282453 -81501019 - L2 LINE L2 -2 3270 3162 254 337 22 0 chr11 67282658 67282750 -81500722 + MER94 DNA DNA 15 108 -26 190 319 28 28 chr11 67283964 67284036 -81499436 + MIR SINE MIR 113 184 -78 378 310 153 43 chr11 67287950 67288414 -81495058 + L2 LINE L2 2174 2688 -626 334 297 137 6 chr11 67288541 67288723 -81494749 + L2 LINE L2 2856 3061 -211 461 235 188 0 chr11 67291222 67291371 -81492101 + MIR SINE MIR 39 215 -47 880 164 184 23 chr11 67291438 67291469 -81492003 + MER58B DNA MER1_type 45 70 -2350 2245 95 3 10 chr11 67291469 67291774 -81491698 - AluSq SINE Alu -10 303 1 880 164 184 23 chr11 67291774 67291998 -81491474 + MER58B DNA MER1_type 70 341 0 229 359 50 19 chr11 67292408 67292567 -81490905 + L3 LINE CR1 1304 1467 -110 247 331 50 25 chr11 67293192 67293352 -81490120 - L2 LINE L2 -219 3053 2890 2129 105 3 3 chr11 67293826 67294122 -81489350 + AluSc SINE Alu 1 296 -13 320 180 45 56 chr11 67294409 67294498 -81488974 - MIR SINE MIR -61 147 60 655 259 41 0 chr11 67294554 67294701 -81488771 + MIR SINE MIR 110 262 0 2030 93 46 0 chr11 67295855 67296135 -81487337 + AluSx SINE Alu 1 293 -19 198 276 95 60 chr11 67297051 67297167 -81486305 - MIR SINE MIR -56 152 33 2054 126 17 0 chr11 67297487 67297788 -81485684 + AluSx SINE Alu 1 306 -6 1875 77 4 15 chr11 67297837 67298096 -81485376 + AluY SINE Alu 1 256 -55 207 100 0 0 chr11 67298486 67298516 -81484956 + (CCCCCT)n Simple_repeat Simple_repeat 5 34 0 1853 120 11 0 chr11 67298536 67298802 -81484670 - AluSx SINE Alu -43 269 1 1547 207 59 8 chr11 67298931 67299288 -81484184 - LTR40b LTR ERVL 0 462 88 1679 139 27 36 chr11 67299291 67299428 -81484044 + AluSx SINE Alu 6 143 -169 2296 80 0 10 chr11 67299428 67299727 -81483745 + AluY SINE Alu 1 296 -15 1679 139 27 36 chr11 67299727 67299890 -81483582 + AluSx SINE Alu 143 303 -9 1293 187 60 28 chr11 67299908 67300191 -81483281 - AluJo SINE Alu -20 292 1 367 278 83 8 chr11 67300191 67300324 -81483148 - MIR SINE MIR -111 151 9 263 275 28 95 chr11 67300463 67300543 -81482929 - L2 LINE L2 -494 2820 2736 2104 96 3 0 chr11 67300543 67300825 -81482647 - AluSx SINE Alu -18 294 12 263 275 28 95 chr11 67300825 67300955 -81482517 - L2 LINE L2 -578 2736 2624 926 122 0 0 chr11 67301149 67301280 -81482192 + AluJb SINE Alu 1 131 -181 269 281 149 0 chr11 67304814 67304928 -81478544 + L2 LINE L2 2561 2691 -623 381 334 130 23 chr11 67304997 67305389 -81478083 + L2 LINE L2 2837 3270 -2 197 215 152 25 chr11 67305596 67305617 -81477855 + MER5A DNA MER1_type 55 72 -117 2114 103 0 3 chr11 67305617 67305930 -81477542 + AluSg SINE Alu 1 312 0 197 215 152 25 chr11 67305930 67305986 -81477486 + MER5A DNA MER1_type 72 143 -46 * 436 138 126 0 chr11 67305938 67306025 -81477447 - MER5A DNA MER1_type -84 105 8 331 240 73 0 chr11 67308280 67308376 -81475096 - MIR SINE MIR -114 148 46 274 340 48 0 chr11 67308433 67308536 -81474936 - MIR SINE MIR -142 120 13 183 330 35 17 chr11 67308692 67308807 -81474665 + L2 LINE L2 2717 2833 -481 279 312 48 24 chr11 67309208 67309333 -81474139 + L2 LINE L2 2932 3059 -213 2348 80 0 0 chr11 67309472 67309772 -81473700 + AluY SINE Alu 1 300 -11 207 280 75 32 chr11 67309789 67309882 -81473590 - MIR SINE MIR -65 197 101 2301 66 0 7 chr11 67309919 67310208 -81473264 + AluSc SINE Alu 1 287 -22 326 74 0 19 chr11 67310260 67310314 -81473158 - AluSq/x SINE Alu -167 135 83 1213 177 5 23 chr11 67310315 67310535 -81472937 - AluJo SINE Alu -96 216 1 1799 174 0 3 chr11 67310608 67310913 -81472559 - AluJo SINE Alu -8 304 1 196 315 52 56 chr11 67310926 67311158 -81472314 - L2 LINE L2 -206 3066 2836 283 116 47 12 chr11 67311166 67311252 -81472220 + GA-rich Low_complexity Low_complexity 2 90 0 1785 126 17 23 chr11 67311357 67311491 -81471981 + AluSx SINE Alu 1 134 -178 1947 135 3 7 chr11 67311491 67311787 -81471685 + AluSx SINE Alu 1 295 -17 1785 126 17 23 chr11 67311787 67311953 -81471519 + AluSx SINE Alu 134 299 -13 1687 187 40 0 chr11 67311964 67312264 -81471208 + AluJb SINE Alu 1 312 0 435 288 69 31 chr11 67313616 67313776 -81469696 + MIR SINE MIR 11 176 -86 438 208 176 0 chr11 67314172 67314297 -81469175 + MIR SINE MIR 21 167 -95 404 253 162 20 chr11 67315420 67315618 -81467854 + MIR SINE MIR 9 234 -28 266 136 0 0 chr11 67317919 67317963 -81465509 + U7 snRNA snRNA 2 45 -18 2344 81 3 0 chr11 67317963 67318271 -81465201 - AluSc SINE Alu 0 309 1 2421 63 0 22 chr11 67318369 67318687 -81464785 - AluY SINE Alu 0 311 1 207 0 0 0 chr11 67319089 67319112 -81464360 + (T)n Simple_repeat Simple_repeat 1 23 0 1027 84 0 0 chr11 67319152 67319283 -81464189 + AluSc SINE Alu 1 131 -178 949 106 0 0 chr11 67319421 67319553 -81463919 - AluY SINE Alu -179 132 1 256 318 151 28 chr11 67319675 67319884 -81463588 - L2 LINE L2 -3 3310 3128 2137 126 0 0 chr11 67319884 67320194 -81463278 - AluSx SINE Alu -2 310 1 256 318 151 28 chr11 67320194 67320505 -81462967 - L2 LINE L2 -185 3128 2583 1726 134 30 34 chr11 67320548 67320846 -81462626 + AluSx SINE Alu 1 297 -15 718 200 15 108 chr11 67320850 67321045 -81462427 + AluJb SINE Alu 121 297 -15 656 265 88 19 chr11 67321282 67321497 -81461975 - MIR SINE MIR -1 261 32 191 265 112 88 chr11 67321626 67321796 -81461676 - L2 LINE L2 -287 2985 2812 2239 104 0 0 chr11 67323098 67323396 -81460076 - AluSx SINE Alu -12 300 3 1549 154 19 32 chr11 67323498 67323809 -81459663 + AluSp SINE Alu 1 307 -6 464 222 148 0 chr11 67323811 67323946 -81459526 - L1 LINE L1 -1785 4361 4207 1512 182 3 75 chr11 67324039 67324358 -81459114 + AluJo SINE Alu 1 296 -16 2058 102 0 3 chr11 67324360 67324664 -81458808 + AluSx SINE Alu 1 303 0 305 270 79 0 chr11 67324705 67324794 -81458678 + HAL1 LINE L1 1579 1674 -833 287 64 0 21 chr11 67324989 67325036 -81458436 + (TC)n Simple_repeat Simple_repeat 1 46 0 26 50 0 0 chr11 67326302 67326342 -81457130 + AT_rich Low_complexity Low_complexity 1 40 0 516 288 191 46 chr11 67326828 67327352 -81456120 - L2 LINE L2 -775 2539 1940 399 336 60 0 chr11 67327558 67327826 -81455646 - LTR33 LTR ERVL -237 284 1 189 0 0 0 chr11 67327907 67327928 -81455544 + (T)n Simple_repeat Simple_repeat 1 21 0 860 157 8 0 chr11 67328043 67328177 -81455295 - AluSq/x SINE Alu -178 135 1 776 209 12 47 chr11 67328314 67328486 -81454986 - AluJo/FRAM SINE Alu 0 302 137 1327 119 8 56 chr11 67328489 67328741 -81454731 - AluSg SINE Alu -15 295 56 2228 91 3 0 chr11 67328761 67329057 -81454415 - AluSp SINE Alu -16 297 1 2022 130 0 7 chr11 67329060 67329393 -81454079 - AluSx SINE Alu 0 312 1 2059 104 3 7 chr11 67329732 67330030 -81453442 - AluSx SINE Alu -15 297 1 827 133 0 8 chr11 67330040 67330168 -81453304 - AluJb SINE Alu -185 127 1 213 167 71 0 chr11 67332055 67332097 -81451375 + L2 LINE L2 3015 3059 -213 216 186 29 57 chr11 67332845 67332915 -81450557 + GA-rich Low_complexity Low_complexity 1 68 0 195 129 0 0 chr11 67332940 67332971 -81450501 + (CCCCCT)n Simple_repeat Simple_repeat 2 32 0 1049 86 7 0 chr11 67333589 67333728 -81449744 + AluSg/x SINE Alu 148 287 -23 184 308 58 0 chr11 67338031 67338083 -81445389 + L2 LINE L2 3240 3294 -19 2108 114 3 3 chr11 67339590 67339888 -81443584 + AluSq SINE Alu 1 298 -15 181 322 34 0 chr11 67340347 67340406 -81443066 - L2 LINE L2 -5 3267 3207 2189 112 0 0 chr11 67343344 67343639 -81439833 - AluSx SINE Alu -17 295 1 512 305 68 5 chr11 67343642 67343832 -81439640 + MER102a DNA MER1_type 126 327 -3 196 299 78 0 chr11 67348275 67348352 -81435120 - L3 LINE CR1 -624 953 871 236 289 10 21 chr11 67348508 67348605 -81434867 + (CTGGGG)n Simple_repeat Simple_repeat 6 101 0 186 330 78 0 chr11 67348813 67348916 -81434556 + L2 LINE L2 2954 3064 -208 202 208 129 40 chr11 67348941 67349042 -81434430 - MIR3 SINE MIR -29 179 70 453 274 73 37 chr11 67349205 67349369 -81434103 - MER5A DNA MER1_type 0 189 20 599 339 131 16 chr11 67350274 67350441 -81433031 - L2 LINE L2 -3 3310 3163 2280 70 0 16 chr11 67350441 67350754 -81432718 + AluSc SINE Alu 1 308 -1 599 339 131 16 chr11 67350754 67351014 -81432458 - L2 LINE L2 -150 3163 2834 270 319 116 0 chr11 67351048 67351186 -81432286 + L2 LINE L2 2594 2747 -567 460 310 54 46 chr11 67351310 67351571 -81431901 + L2 LINE L2 2985 3247 -25 318 313 192 5 chr11 67351631 67351829 -81431643 + MIR SINE MIR 28 262 0 318 299 103 0 chr11 67352687 67352794 -81430678 - L2 LINE L2 -8 3305 3188 276 257 129 0 chr11 67353628 67353729 -81429743 + MIR3 SINE MIR 72 185 -23 485 285 108 59 chr11 67354004 67354433 -81429039 + L2 LINE L2 2714 3180 -133 2383 78 3 3 chr11 67354452 67354761 -81428711 + AluY SINE Alu 1 309 -2 1324 84 11 0 chr11 67354896 67355074 -81428398 + AluSg/x SINE Alu 111 290 -20 284 326 181 16 chr11 67355740 67355933 -81427539 + L2 LINE L2 3015 3239 -74 229 229 0 0 chr11 67356435 67356483 -81426989 + MIR SINE MIR 97 144 -64 739 246 60 9 chr11 67356538 67356753 -81426719 + MIR SINE MIR 12 237 -25 638 174 94 29 chr11 67356789 67356927 -81426545 - AluJb SINE Alu -43 269 123 370 337 126 0 chr11 67358353 67358378 -81425094 - MIR SINE MIR -18 244 224 2341 95 26 0 chr11 67358378 67358683 -81424789 - AluSp SINE Alu 0 313 1 370 337 126 0 chr11 67358683 67358856 -81424616 - MIR SINE MIR -38 224 21 291 169 0 67 chr11 67359519 67359608 -81423864 - L2 LINE L2 -165 3107 3025 209 367 47 16 chr11 67360086 67360214 -81423258 + MIR SINE MIR 127 258 -4 280 275 0 0 chr11 67360527 67360596 -81422876 - MIR SINE MIR -55 153 85 265 295 35 23 chr11 67362224 67362366 -81421106 - MIR SINE MIR -53 155 18 2443 78 3 0 chr11 67364377 67364685 -81418787 - AluSg SINE Alu -1 309 1 203 305 124 9 chr11 67366722 67366827 -81416645 - MIR SINE MIR -62 146 30 2332 91 0 22 chr11 67367527 67367846 -81415626 + AluSx SINE Alu 1 312 0 2192 118 68 21 chr11 67367862 67368245 -81415227 - MER84 LTR ERVI -106 401 1 255 254 105 44 chr11 67368863 67368977 -81414495 - L2 LINE L2 0 3313 3193 329 305 238 0 chr11 67369459 67369761 -81413711 + L2 LINE L2 2939 3312 -1 2222 118 3 6 chr11 67369865 67370178 -81413294 - AluSx SINE Alu 0 312 1 2409 98 0 9 chr11 67370278 67370593 -81412879 + AluSx SINE Alu 1 312 0 2457 77 0 10 chr11 67370593 67370916 -81412556 + AluY SINE Alu 1 311 0 24 32 0 0 chr11 67371447 67371478 -81411994 + AT_rich Low_complexity Low_complexity 1 31 0 2297 95 0 3 chr11 67371478 67371772 -81411700 + AluSp SINE Alu 21 313 0 1329 139 5 49 chr11 67371775 67371998 -81411474 + AluJb SINE Alu 86 298 -14 783 249 28 38 chr11 67372002 67372291 -81411181 + L1MC5 LINE L1 7311 7596 -365 252 150 25 0 chr11 67372356 67372396 -81411076 - MER57A LTR ERV1 -68 335 295 2273 71 0 46 chr11 67372482 67372805 -81410667 + AluY SINE Alu 1 308 -3 356 214 98 121 chr11 67372896 67373081 -81410391 - MER34B LTR ERV1 -183 382 194 2341 69 45 0 chr11 67373081 67373253 -81410219 - AluY SINE Alu -8 303 111 288 0 0 0 chr11 67373253 67373285 -81410187 + (TG)n Simple_repeat Simple_repeat 1 32 0 2341 69 45 0 chr11 67373285 67373402 -81410070 - AluY SINE Alu -200 111 1 356 214 98 121 chr11 67373402 67373603 -81409869 - MER34B LTR ERV1 -371 194 5 294 207 25 83 chr11 67373615 67373695 -81409777 + L1MC5 LINE L1 7800 7883 -78 2465 85 3 0 chr11 67373695 67374001 -81409471 - AluSp SINE Alu -6 307 1 294 207 25 83 chr11 67374001 67374013 -81409459 + L1MC5 LINE L1 7883 7894 -67 2262 115 3 16 chr11 67374013 67374327 -81409145 - AluSg SINE Alu 0 310 1 294 207 25 83 chr11 67374327 67374354 -81409118 + L1MC5 LINE L1 7894 7913 -48 653 56 0 122 chr11 67374501 67374557 -81408915 - MER4A LTR ERV1 0 664 625 2283 109 0 3 chr11 67374557 67374860 -81408612 + AluSg SINE Alu 1 302 -8 653 56 0 122 chr11 67374860 67374910 -81408562 - MER4A LTR ERV1 -39 625 571 * 1547 111 170 96 chr11 67374906 67375301 -81408171 - MER4A LTR ERV1 -240 424 1 2477 103 0 0 chr11 67375607 67375919 -81407553 - AluSx SINE Alu 0 312 1 410 299 0 28 chr11 67375923 67376067 -81407405 - MIR3 SINE MIR -57 151 12 592 258 113 41 chr11 67376146 67376340 -81407132 + MIR SINE MIR 38 245 -17 365 281 44 31 chr11 67376420 67376580 -81406892 - MIR3 SINE MIR -6 202 41 2274 87 10 13 chr11 67380291 67380591 -81402881 - AluSx SINE Alu -13 299 1 181 268 0 0 chr11 67380837 67380878 -81402594 + MIR SINE MIR 108 148 -60 281 339 90 34 chr11 67380883 67381060 -81402412 - L3 LINE CR1 -2 1575 1389 225 0 0 0 chr11 67381239 67381264 -81402208 + (TG)n Simple_repeat Simple_repeat 1 25 0 243 0 0 0 chr11 67381806 67381833 -81401639 + (TG)n Simple_repeat Simple_repeat 2 28 0 181 271 21 0 chr11 67381875 67381923 -81401549 - L2 LINE L2 -2 3311 3263 349 229 92 0 chr11 67381924 67382033 -81401439 + MIR SINE MIR 85 203 -59 2179 147 0 0 chr11 67382919 67383225 -81400247 + AluSq SINE Alu 1 306 -7 2329 87 7 3 chr11 67383642 67383940 -81399532 - AluSc SINE Alu -10 299 1 1933 111 0 15 chr11 67384486 67384757 -81398715 - AluSx SINE Alu -1 311 45 1033 194 156 28 chr11 67384763 67384816 -81398656 - MER2 DNA MER2_type -20 325 280 2452 79 0 10 chr11 67384816 67385121 -81398351 + AluSq SINE Alu 1 302 -11 1033 194 156 28 chr11 67385121 67385355 -81398117 - MER2 DNA MER2_type -65 280 1 2385 87 0 0 chr11 67385369 67385669 -81397803 + AluY SINE Alu 1 300 -11 292 363 20 20 chr11 67385843 67385989 -81397483 + MIR3 SINE MIR 1 146 -62 397 289 63 81 chr11 67389097 67389452 -81394020 + L1M4c LINE L1 949 1447 -1296 1913 143 10 3 chr11 67396217 67396511 -81386961 - AluSx SINE Alu -16 296 1 2342 80 11 0 chr11 67397349 67397636 -81385836 + AluSp SINE Alu 1 290 -23 1584 167 55 0 chr11 67397737 67397994 -81385478 - AluJo SINE Alu -41 271 1 5055 20 37 0 chr11 67399153 67399693 -81383779 + SVA Other Other 819 1378 -8 731 161 0 0 chr11 67399693 67399811 -81383661 - FLAM_C SINE Alu -15 118 1 1733 157 35 15 chr11 67399811 67400154 -81383318 - L1PA16 LINE L1 0 6166 5817 193 200 296 24 chr11 67400540 67400665 -81382807 - MIR SINE MIR -9 253 95 267 351 43 0 chr11 67400695 67400789 -81382683 - MIR SINE MIR -148 114 17 2414 94 3 0 chr11 67400811 67401109 -81382363 + AluSx SINE Alu 5 303 -9 1544 193 0 22 chr11 67401118 67401393 -81382079 + AluJb SINE Alu 1 269 -43 2042 104 0 45 chr11 67401401 67401689 -81381783 + AluSg SINE Alu 1 275 -35 297 316 11 46 chr11 67402826 67403000 -81380472 + Charlie8 DNA MER1_type 1 168 -2249 2537 71 0 7 chr11 67403000 67403310 -81380162 + AluSg SINE Alu 1 308 -2 635 134 0 0 chr11 67403786 67403883 -81379589 + FRAM SINE Alu 59 155 -21 1873 130 30 23 chr11 67404462 67404763 -81378709 - AluSx SINE Alu -9 303 1 2231 106 7 0 chr11 67404865 67405157 -81378315 + AluSx SINE Alu 3 296 -16 607 195 6 44 chr11 67405160 67405319 -81378153 - L1M4 LINE L1 -2208 3938 3786 2482 88 3 3 chr11 67405323 67405630 -81377842 - AluSp SINE Alu -6 307 1 1681 159 23 58 chr11 67405630 67405939 -81377533 - AluJo SINE Alu -9 303 6 1248 82 48 106 chr11 67405946 67406153 -81377319 - AluY SINE Alu -116 195 1 867 102 46 96 chr11 67406153 67406350 -81377122 - L1M4 LINE L1 -2441 3705 3519 445 153 24 24 chr11 67406350 67406368 -81377104 - MLT1D LTR MaLR -420 85 68 2217 121 3 0 chr11 67406368 67406665 -81376807 - AluSx SINE Alu -14 298 1 445 153 24 24 chr11 67406665 67406731 -81376741 - MLT1D LTR MaLR -436 69 1 255 185 31 0 chr11 67406778 67406843 -81376629 + A-rich Low_complexity Low_complexity 2 68 0 2441 68 7 0 chr11 67406914 67407210 -81376262 - AluSg SINE Alu -11 299 2 2326 78 9 44 chr11 67407557 67407734 -81375738 - AluSx SINE Alu 0 312 149 2614 47 0 7 chr11 67407734 67408035 -81375437 - AluY SINE Alu -12 299 1 2326 78 9 44 chr11 67408035 67408176 -81375296 - AluSx SINE Alu -163 149 5 819 184 109 29 chr11 67408127 67408190 -81375282 - AluSx SINE Alu -124 188 131 1627 82 0 0 chr11 67408190 67408385 -81375087 - AluSg/x SINE Alu -21 289 95 4327 179 36 49 chr11 67408386 67409352 -81374120 - LTR13 LTR ERVK 0 954 1 3752 193 46 54 chr11 67409356 67410333 -81373139 + LTR5 LTR ERVK 1 969 0 819 184 109 29 chr11 67410333 67410436 -81373036 - AluSx SINE Alu -183 129 1 323 325 49 8 chr11 67410440 67410563 -81372909 - MIR SINE MIR -117 145 18 257 296 12 25 chr11 67413256 67413337 -81370135 + MIR SINE MIR 13 92 -116 1178 165 21 45 chr11 67413369 67413510 -81369962 + MER46A DNA MER2_type 1 135 -2596 2151 97 27 3 chr11 67413510 67413808 -81369664 + AluSx SINE Alu 1 305 -7 1178 165 21 45 chr11 67413808 67413908 -81369564 + MER46A DNA MER2_type 135 236 0 644 132 0 38 chr11 67414363 67414469 -81369003 - FRAM SINE Alu -16 160 59 2056 133 7 0 chr11 67414945 67415254 -81368218 - AluSx SINE Alu -1 311 1 826 183 6 56 chr11 67415396 67415566 -81367906 - AluSg/x SINE Alu -15 295 133 1618 109 0 28 chr11 67415566 67415813 -81367659 - AluSg SINE Alu -15 295 56 2206 95 3 0 chr11 67415833 67416129 -81367343 - AluSp SINE Alu -16 297 1 2022 130 0 7 chr11 67416132 67416465 -81367007 - AluSx SINE Alu 0 312 1 2302 85 0 0 chr11 67416807 67417101 -81366371 - AluSx SINE Alu -15 297 4 242 137 0 20 chr11 67417113 67417164 -81366308 - L1ME LINE L1 -351 5815 5766 2106 112 7 10 chr11 67417182 67417317 -81366155 + AluSx SINE Alu 1 135 -177 312 89 89 0 chr11 67417317 67417373 -81366099 + L1PA8 LINE L1 6108 6168 -4 2106 112 7 10 chr11 67417373 67417540 -81365932 + AluSx SINE Alu 135 302 -10 1717 160 57 7 chr11 67417545 67417827 -81365645 + AluSx SINE Alu 1 296 -16 1627 167 58 7 chr11 67417835 67418128 -81365344 + AluSx SINE Alu 1 308 -4 705 135 29 0 chr11 67418132 67418236 -81365236 - FLAM_C SINE Alu -35 108 2 1680 158 0 42 chr11 67418243 67418416 -81365056 - AluJb SINE Alu -14 298 142 2081 113 3 0 chr11 67418416 67418707 -81364765 - AluSp SINE Alu -21 292 1 1680 158 0 42 chr11 67418707 67418844 -81364628 - AluJb SINE Alu -170 142 1 243 138 17 263 chr11 67418845 67418899 -81364573 - L1ME LINE L1 -776 5370 5304 2012 114 47 0 chr11 67418899 67419197 -81364275 - AluSx SINE Alu 0 312 1 243 138 17 263 chr11 67419197 67419326 -81364146 - L1ME LINE L1 -842 5304 5281 2212 118 0 0 chr11 67419326 67419632 -81363840 - AluSx SINE Alu -6 306 1 243 138 17 263 chr11 67419632 67419736 -81363736 - L1ME LINE L1 -865 5281 5153 2476 56 0 10 chr11 67419807 67420112 -81363360 + AluY SINE Alu 1 302 -9 2261 97 0 0 chr11 67420367 67420667 -81362805 - AluSc SINE Alu -9 300 1 2062 125 3 0 chr11 67420845 67421134 -81362338 + AluSx SINE Alu 1 290 -22 1159 44 0 0 chr11 67421186 67421321 -81362151 - AluSp SINE Alu -178 135 1 2128 118 3 16 chr11 67421333 67421647 -81361825 - AluSg SINE Alu 0 310 1 610 56 0 122 chr11 67421821 67421877 -81361595 - MER4A LTR ERV1 0 664 625 2178 109 0 3 chr11 67421877 67422180 -81361292 + AluSg SINE Alu 1 302 -8 610 56 0 122 chr11 67422180 67422230 -81361242 - MER4A LTR ERV1 -39 625 571 * 1424 109 169 98 chr11 67422226 67422622 -81360850 - MER4A LTR ERV1 -240 424 1 2380 99 0 0 chr11 67422928 67423240 -81360232 - AluSx SINE Alu 0 312 1 459 299 0 38 chr11 67423240 67423388 -81360084 - MIR3 SINE MIR -53 155 12 622 261 97 37 chr11 67423435 67423661 -81359811 + MIR SINE MIR 8 245 -17 408 281 44 31 chr11 67423741 67423901 -81359571 - MIR3 SINE MIR -6 202 41 2168 87 10 13 chr11 67427615 67427915 -81355557 - AluSx SINE Alu -13 299 1 181 268 0 0 chr11 67428161 67428202 -81355270 + MIR SINE MIR 108 148 -60 311 350 85 28 chr11 67428207 67428384 -81355088 - L3 LINE CR1 -2 1575 1389 225 0 0 0 chr11 67428563 67428588 -81354884 + (TG)n Simple_repeat Simple_repeat 1 25 0 243 0 0 0 chr11 67429130 67429157 -81354315 + (TG)n Simple_repeat Simple_repeat 2 28 0 192 271 21 0 chr11 67429199 67429247 -81354225 - L2 LINE L2 -2 3311 3263 381 229 92 0 chr11 67429248 67429357 -81354115 + MIR SINE MIR 85 203 -59 1182 323 25 87 chr11 67430243 67430565 -81352907 + AluSx SINE Alu 1 302 0 733 150 26 0 chr11 67430566 67430679 -81352793 - AluJo/FLAM SINE Alu -185 117 2 2150 105 6 16 chr11 67431063 67431378 -81352094 + AluSp SINE Alu 1 312 -1 2199 94 0 7 chr11 67431385 67431684 -81351788 + AluSp SINE Alu 7 303 -10 457 250 20 20 chr11 67431706 67431854 -81351618 - L2 LINE L2 -247 3066 2919 202 338 0 14 chr11 67431866 67431940 -81351532 + MIR SINE MIR 111 183 -79 216 217 67 0 chr11 67432362 67432422 -81351050 + MIR SINE MIR 61 124 -84 207 276 216 16 chr11 67432555 67432682 -81350790 + MIR SINE MIR 9 160 -102 701 265 93 5 chr11 67432705 67432909 -81350563 + MIR SINE MIR 35 256 -6 193 191 0 0 chr11 67433087 67433129 -81350343 + MIR SINE MIR 96 137 -71 328 282 23 36 chr11 67433268 67433449 -81350023 - MIR SINE MIR -17 245 12 2292 100 3 3 chr11 67435044 67435355 -81348117 + AluSx SINE Alu 1 311 -1 219 352 56 31 chr11 67435873 67436035 -81347437 - L2 LINE L2 -2 3311 3146 2061 120 3 3 chr11 67436041 67436340 -81347132 + AluSp SINE Alu 1 299 -14 1940 132 0 3 chr11 67436398 67436685 -81346787 + AluJb SINE Alu 1 286 -26 2058 100 0 48 chr11 67436702 67436849 -81346623 + AluSx SINE Alu 1 127 -185 2254 82 3 16 chr11 67436849 67437164 -81346308 + AluY SINE Alu 1 311 0 2058 100 0 48 chr11 67437164 67437327 -81346145 + AluSx SINE Alu 127 296 -16 1602 250 157 16 chr11 67437330 67437967 -81345505 - L2 LINE L2 -843 2471 1745 252 260 70 30 chr11 67438427 67438527 -81344945 - MIR SINE MIR -95 113 10 190 313 48 48 chr11 67439319 67439402 -81344070 - MIR3 SINE MIR -27 181 99 337 342 144 22 chr11 67442784 67443460 -81340012 - L2 LINE L2 -235 3037 2261 182 359 44 13 chr11 67444612 67444771 -81338701 - L2 LINE L2 -2541 773 610 180 281 58 66 chr11 67444806 67444927 -81338545 - L2 LINE L2 -2864 450 331 980 87 7 0 chr11 67445774 67445923 -81337549 + (TCCA)n Simple_repeat Simple_repeat 3 152 0 293 278 0 0 chr11 67445993 67446065 -81337407 - MIR SINE MIR -22 240 169 2391 79 3 0 chr11 67446118 67446423 -81337049 + AluSg SINE Alu 1 306 -4 336 302 204 37 chr11 67446424 67446772 -81336700 - L2 LINE L2 -20 3252 2847 246 306 58 16 chr11 67448091 67448212 -81335260 + L2 LINE L2 2941 3066 -206 1783 177 0 3 chr11 67448225 67448530 -81334942 + AluJo SINE Alu 1 304 -8 970 113 0 8 chr11 67448603 67448736 -81334736 + FLAM_C SINE Alu 1 132 -1 2365 80 0 10 chr11 67448743 67449054 -81334418 + AluSq SINE Alu 1 308 -5 2057 102 0 3 chr11 67449445 67449749 -81333723 - AluSx SINE Alu 0 303 1 1248 196 13 76 chr11 67449751 67450067 -81333405 - AluJo SINE Alu -16 296 1 464 222 148 0 chr11 67450160 67450295 -81333177 + L1 LINE L1 4207 4361 -1785 204 40 0 0 chr11 67450297 67450322 -81333150 + (T)n Simple_repeat Simple_repeat 1 25 0 5026 103 28 11 chr11 67450431 67451212 -81332260 - SVA Other Other -520 866 72 747 31 0 54 chr11 67451212 67451341 -81332131 + (GGGAGA)n Simple_repeat Simple_repeat 3 124 0 21 0 0 0 chr11 67451356 67451377 -81332095 + AT_rich Low_complexity Low_complexity 1 21 0 2086 114 0 3 chr11 67451377 67451690 -81331782 + AluSx SINE Alu 1 312 0 2260 92 0 0 chr11 67451693 67451987 -81331485 + AluY SINE Alu 1 294 -17 558 303 76 16 chr11 67454090 67454275 -81329197 - L2 LINE L2 0 3313 3118 201 216 0 39 chr11 67454470 67454505 -81328967 + MIR SINE MIR 113 147 -115 2042 114 10 0 chr11 67454505 67454795 -81328677 + AluSq SINE Alu 1 293 -20 201 216 0 39 chr11 67454795 67454810 -81328662 + MIR SINE MIR 147 161 -101 2066 126 14 0 chr11 67456206 67456499 -81326973 + AluSx SINE Alu 1 297 -15 2001 149 3 0 chr11 67457576 67457877 -81325595 + AluSx SINE Alu 1 302 -10 423 312 67 74 chr11 67658724 67659112 -81124360 + HAL1 LINE L1 895 1281 -1226 282 136 0 0 chr11 67667341 67667385 -81116087 + U7 snRNA snRNA 2 45 -18 2321 81 3 0 chr11 67667385 67667693 -81115779 - AluSc SINE Alu 0 309 1 577 215 144 55 chr11 67667705 67667791 -81115681 + L2 LINE L2 3021 3098 -215 2403 63 0 22 chr11 67667791 67668109 -81115363 - AluY SINE Alu 0 311 1 577 215 144 55 chr11 67668109 67668278 -81115194 + L2 LINE L2 3098 3299 -14 884 186 37 11 chr11 67668285 67668473 -81114999 - AluJb SINE Alu 0 312 120 24 32 0 0 chr11 67668602 67668633 -81114839 + AT_rich Low_complexity Low_complexity 1 31 0 374 91 152 0 chr11 67668633 67668699 -81114773 + AluSp SINE Alu 121 196 -107 1589 157 22 58 chr11 67668706 67669018 -81114454 + AluJo SINE Alu 6 306 -6 2353 85 3 3 chr11 67669018 67669325 -81114147 + AluSp SINE Alu 1 307 -6 588 195 6 44 chr11 67669329 67669488 -81113984 + L1M4 LINE L1 3786 3938 -2208 2187 108 0 0 chr11 67669489 67669785 -81113687 - AluSx SINE Alu -14 298 3 1797 137 20 16 chr11 67669887 67670193 -81113279 + AluSx SINE Alu 1 307 -5 2197 97 3 0 chr11 67670467 67670766 -81112706 - AluSc SINE Alu -9 300 1 2048 128 0 0 chr11 67670944 67671234 -81112238 + AluSx SINE Alu 1 290 -22 1092 190 124 33 chr11 67671288 67671562 -81111910 - AluJo SINE Alu -13 299 1 1760 174 0 3 chr11 67671635 67671940 -81111532 - AluJo SINE Alu -8 304 1 227 107 18 54 chr11 67672104 67672160 -81111312 + (GA)n Simple_repeat Simple_repeat 2 55 0 769 64 47 18 chr11 67672160 67672331 -81111141 + GA-rich Low_complexity Low_complexity 1 176 0 2027 102 0 3 chr11 67672656 67672960 -81110512 - AluSx SINE Alu 0 303 1 801 173 12 52 chr11 67672962 67673135 -81110337 - FRAM SINE Alu -16 160 1 2085 86 0 23 chr11 67673253 67673556 -81109916 - AluY SINE Alu -11 300 5 2314 85 10 0 chr11 67673561 67673867 -81109605 - AluSp SINE Alu -4 309 1 1792 148 10 3 chr11 67675120 67675418 -81108054 - AluSx SINE Alu -12 300 1 1174 100 10 5 chr11 67675774 67675974 -81107498 + L1P LINE L1 3776 3976 -2170 5541 135 7 1 chr11 67675993 67676835 -81106637 + L1P3 LINE L1 10 856 -5605 915 122 0 0 chr11 67680210 67680341 -81103131 - AluJb SINE Alu -181 131 1 259 256 62 128 chr11 67680535 67680665 -81102807 + L2 LINE L2 2624 2736 -578 2081 96 3 0 chr11 67680665 67680947 -81102525 + AluSx SINE Alu 12 294 -18 259 256 62 128 chr11 67680947 67681027 -81102445 + L2 LINE L2 2736 2820 -494 358 266 86 8 chr11 67681171 67681299 -81102173 + MIR SINE MIR 14 151 -111 1334 180 64 32 chr11 67681299 67681582 -81101890 + AluJo SINE Alu 1 292 -10 1646 139 27 36 chr11 67681600 67681763 -81101709 - AluSx SINE Alu -9 303 143 2283 84 0 7 chr11 67681763 67682061 -81101411 - AluY SINE Alu -15 296 1 1646 139 27 36 chr11 67682061 67682198 -81101274 - AluSx SINE Alu -169 143 6 1681 199 62 11 chr11 67682201 67682558 -81100914 + LTR40b LTR ERVL 88 462 0 1791 120 11 4 chr11 67682687 67682954 -81100518 + AluSx SINE Alu 1 269 -43 207 100 0 0 chr11 67682974 67683004 -81100468 + (AGGGGG)n Simple_repeat Simple_repeat 5 34 0 195 42 0 0 chr11 67683271 67683295 -81100177 + (T)n Simple_repeat Simple_repeat 1 24 0 619 292 16 39 chr11 67683369 67683626 -81099846 - MIR SINE MIR 0 262 12 2001 114 7 10 chr11 67683886 67684184 -81099288 + AluSx SINE Alu 1 297 -15 331 250 152 98 chr11 67684422 67684496 -81098976 - MIR SINE MIR -11 251 182 2085 130 3 3 chr11 67684496 67684804 -81098668 - AluSx SINE Alu -4 308 1 331 250 152 98 chr11 67684804 67684830 -81098642 - MIR SINE MIR -80 182 159 557 223 15 31 chr11 67684830 67684960 -81098512 + FLAM_A SINE Alu 1 128 -5 331 250 152 98 chr11 67684960 67685042 -81098430 - MIR SINE MIR -103 159 58 350 273 0 0 chr11 67685139 67685227 -81098245 + MIR SINE MIR 36 123 -85 2354 58 3 10 chr11 67685490 67685798 -81097674 - AluY SINE Alu -5 306 1 374 149 21 21 chr11 67685869 67685963 -81097509 + L1ME LINE L1 5153 5246 -900 2180 118 0 0 chr11 67685973 67686279 -81097193 + AluSx SINE Alu 1 306 -6 415 174 19 181 chr11 67686308 67686408 -81097064 + L1ME LINE L1 5241 5309 -837 2007 111 47 0 chr11 67686408 67686706 -81096766 + AluSx SINE Alu 1 312 0 415 174 19 181 chr11 67686706 67686760 -81096712 + L1ME LINE L1 5309 5370 -776 1641 158 0 42 chr11 67686761 67686898 -81096574 + AluJb SINE Alu 1 142 -170 1768 155 3 0 chr11 67686898 67687189 -81096283 + AluSp SINE Alu 1 292 -21 1641 158 0 42 chr11 67687189 67687362 -81096110 + AluJb SINE Alu 142 298 -14 701 135 29 0 chr11 67687369 67687473 -81095999 + FLAM_C SINE Alu 2 108 -35 1588 167 58 7 chr11 67687477 67687770 -81095702 - AluSx SINE Alu -4 308 1 1685 160 57 7 chr11 67687778 67688060 -81095412 - AluSx SINE Alu -16 296 1 2056 112 7 13 chr11 67688064 67688233 -81095239 - AluSx SINE Alu -9 303 135 318 89 89 0 chr11 67688233 67688289 -81095183 - L1PA8 LINE L1 -4 6168 6108 2056 112 7 13 chr11 67688289 67688424 -81095048 - AluSx SINE Alu -177 135 1 254 137 0 20 chr11 67688442 67688493 -81094979 + L1ME LINE L1 5766 5815 -351 2283 85 0 0 chr11 67688505 67688799 -81094673 + AluSx SINE Alu 4 297 -15 1991 130 0 7 chr11 67689138 67689471 -81094001 + AluSx SINE Alu 1 312 0 2185 96 3 16 chr11 67689474 67689788 -81093684 + AluSp SINE Alu 1 310 -3 1602 109 0 28 chr11 67689790 67690037 -81093435 + AluSg SINE Alu 56 295 -15 863 190 11 40 chr11 67690037 67690211 -81093261 + AluSg/x SINE Alu 132 300 -10 2188 116 3 0 chr11 67690348 67690659 -81092813 + AluSx SINE Alu 1 312 0 2099 78 7 14 chr11 67690756 67691052 -81092420 + AluSc SINE Alu 1 294 -15 267 331 103 7 chr11 67692579 67692715 -81090757 + MIR3 SINE MIR 45 193 -15 566 305 68 5 chr11 67692981 67693171 -81090301 - MER102b DNA MER1_type -3 338 137 2122 116 0 0 chr11 67693174 67693468 -81090004 + AluSx SINE Alu 1 294 -18 201 39 0 0 chr11 67694697 67694723 -81088749 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 225 292 195 41 chr11 67694730 67694925 -81088547 - L2 LINE L2 -74 3239 3015 286 340 173 21 chr11 67697160 67697627 -81085845 + L2 LINE L2 2301 2838 -476 377 156 0 0 chr11 67698348 67698412 -81085060 - AluS SINE Alu -235 64 1 2203 97 3 0 chr11 67698418 67698716 -81084756 - AluSx SINE Alu -10 302 4 220 229 0 0 chr11 67699809 67699857 -81083615 + MIR SINE MIR 97 144 -64 714 246 60 9 chr11 67699912 67700127 -81083345 + MIR SINE MIR 12 237 -25 631 174 94 29 chr11 67700163 67700301 -81083171 - AluJb SINE Alu -43 269 123 26 50 0 0 chr11 67701940 67701980 -81081492 + AT_rich Low_complexity Low_complexity 1 40 0 391 285 183 51 chr11 67702500 67702991 -81080481 - L2 LINE L2 -819 2495 1940 473 336 60 0 chr11 67703197 67703465 -81080007 - LTR33 LTR ERVL -237 284 1 849 164 15 104 chr11 67703546 67703747 -81079725 - AluJb SINE Alu -9 303 121 1693 134 30 34 chr11 67703751 67704049 -81079423 - AluSx SINE Alu -15 297 1 216 279 55 55 chr11 67704092 67704275 -81079197 + L2 LINE L2 2583 2765 -549 2112 126 0 0 chr11 67704405 67704715 -81078757 + AluSx SINE Alu 1 310 -2 942 106 0 0 chr11 67705046 67705178 -81078294 + AluY SINE Alu 1 132 -179 212 167 71 0 chr11 67707100 67707142 -81076330 + L2 LINE L2 3015 3059 -213 216 186 29 57 chr11 67707890 67707960 -81075512 + GA-rich Low_complexity Low_complexity 1 68 0 195 129 0 0 chr11 67707985 67708016 -81075456 + (CCCCCT)n Simple_repeat Simple_repeat 2 32 0 1114 88 0 0 chr11 67708634 67708781 -81074691 + AluSg/x SINE Alu 150 296 -16 316 301 183 54 chr11 67715073 67715462 -81068010 + L2 LINE L2 2814 3252 -20 2165 97 3 3 chr11 67715463 67715761 -81067711 - AluSg SINE Alu -12 298 1 293 278 0 0 chr11 67715814 67715886 -81067586 + MIR SINE MIR 169 240 -22 980 87 7 0 chr11 67715956 67716105 -81067367 + (TGGA)n Simple_repeat Simple_repeat 3 152 0 481 313 182 5 chr11 67717555 67717753 -81065719 + MIR SINE MIR 28 260 -2 2204 116 0 0 chr11 67719250 67719552 -81063920 + AluSq SINE Alu 1 302 -11 388 253 162 20 chr11 67721220 67721418 -81062054 - MIR SINE MIR -28 234 9 438 208 176 0 chr11 67722541 67722666 -81060806 - MIR SINE MIR -95 167 21 435 288 69 31 chr11 67723062 67723222 -81060250 - MIR SINE MIR -86 176 11 1687 187 40 0 chr11 67724574 67724874 -81058598 - AluJb SINE Alu 0 312 1 1932 116 17 20 chr11 67724885 67725049 -81058423 - AluSx SINE Alu -12 300 136 2157 125 0 0 chr11 67725049 67725344 -81058128 - AluSx SINE Alu -17 295 1 1932 116 17 20 chr11 67725344 67725480 -81057992 - AluSx SINE Alu -176 136 1 1778 163 14 0 chr11 67725756 67726051 -81057421 + 7SLRNA srpRNA srpRNA 10 308 -12 210 308 0 0 chr11 67726202 67726254 -81057218 - MIR SINE MIR 0 262 211 1395 179 43 25 chr11 67726290 67726569 -81056903 + AluJo SINE Alu 1 284 -28 418 308 45 12 chr11 67726585 67726761 -81056711 - MIR SINE MIR -61 147 19 216 0 0 0 chr11 67726769 67726793 -81056679 + (A)n Simple_repeat Simple_repeat 1 24 0 201 67 0 0 chr11 67729190 67729220 -81054252 - L2 LINE L2 -1 3312 3283 2360 84 0 0 chr11 67729258 67729567 -81053905 - AluSc SINE Alu 0 309 1 2241 75 0 29 chr11 67729676 67729984 -81053488 - AluY SINE Alu -10 301 3 2325 56 0 11 chr11 67730118 67730404 -81053068 - AluY SINE Alu -28 283 1 556 207 148 18 chr11 67730404 67730573 -81052899 + L2 LINE L2 3109 3299 -14 908 186 37 11 chr11 67730580 67730768 -81052704 - AluJb SINE Alu 0 312 120 2303 82 3 0 chr11 67730892 67731184 -81052288 - AluSp SINE Alu -20 293 1 1669 167 3 24 chr11 67731189 67731483 -81051989 - AluJo SINE Alu -24 288 1 2151 84 0 20 chr11 67731493 67731789 -81051683 - AluSc SINE Alu -19 290 1 1774 130 88 0 chr11 67731871 67732155 -81051317 - AluSg1 SINE Alu 0 309 1 1622 191 10 45 chr11 67732210 67732410 -81051062 + L1M4 LINE L1 4600 4779 -1367 1968 97 72 0 chr11 67732410 67732688 -81050784 + AluSp SINE Alu 1 298 -15 1622 191 10 45 chr11 67732688 67732905 -81050567 + L1M4 LINE L1 4779 5002 -1144 1610 149 51 44 chr11 67732908 67733203 -81050269 + AluJb SINE Alu 1 297 -15 656 265 88 19 chr11 67733440 67733655 -81049817 - MIR SINE MIR -1 261 32 191 265 112 88 chr11 67733784 67733954 -81049518 - L2 LINE L2 -287 2985 2812 190 313 48 48 chr11 67737465 67737548 -81045924 + MIR3 SINE MIR 99 181 -27 238 293 187 5 chr11 67738141 67738339 -81045133 + MER102b DNA MER1_type 108 341 0 252 265 71 31 chr11 67738339 67738437 -81045035 + MIR SINE MIR 12 113 -95 1602 250 157 16 chr11 67738897 67739534 -81043938 + L2 LINE L2 1745 2471 -843 1935 102 0 57 chr11 67739537 67739703 -81043769 - AluSx SINE Alu -16 296 155 2254 82 3 16 chr11 67739703 67740018 -81043454 - AluY SINE Alu 0 311 1 1935 102 0 57 chr11 67740018 67740165 -81043307 - AluSx SINE Alu -157 155 1 1940 132 0 3 chr11 67740182 67740469 -81043003 - AluJb SINE Alu -26 286 1 2061 120 3 3 chr11 67740527 67740826 -81042646 - AluSp SINE Alu -14 299 1 219 352 56 31 chr11 67740832 67740994 -81042478 + L2 LINE L2 3146 3311 -2 2328 92 0 3 chr11 67741523 67741827 -81041645 - AluSx SINE Alu -9 303 1 328 282 23 36 chr11 67743423 67743604 -81039868 + MIR SINE MIR 12 245 -17 193 191 0 0 chr11 67743743 67743785 -81039687 - MIR SINE MIR -71 137 96 701 265 93 5 chr11 67743963 67744167 -81039305 - MIR SINE MIR -6 256 35 207 276 216 16 chr11 67744190 67744317 -81039155 - MIR SINE MIR -102 160 9 216 217 67 0 chr11 67744450 67744510 -81038962 - MIR SINE MIR -84 124 61 202 338 0 14 chr11 67744932 67745006 -81038466 - MIR SINE MIR -79 183 111 457 250 20 20 chr11 67745018 67745166 -81038306 + L2 LINE L2 2919 3066 -247 2199 94 0 7 chr11 67745188 67745487 -81037985 - AluSp SINE Alu -10 303 7 2150 105 6 16 chr11 67745494 67745809 -81037663 - AluSp SINE Alu -1 312 1 255 326 136 14 chr11 67746038 67746116 -81037356 - MIR SINE MIR -19 243 176 1271 149 21 45 chr11 67746116 67746216 -81037256 - MER46A DNA MER2_type -2495 236 135 2158 95 27 3 chr11 67746216 67746512 -81036960 - AluSx SINE Alu -9 303 1 1271 149 21 45 chr11 67746512 67746653 -81036819 - MER46A DNA MER2_type -2596 135 1 255 326 136 14 chr11 67746653 67746766 -81036706 - MIR SINE MIR -86 176 13 258 291 48 19 chr11 67747304 67747407 -81036065 - MIR SINE MIR -85 177 72 192 328 0 0 chr11 67748593 67748654 -81034818 - MIR SINE MIR -62 146 86 323 325 49 8 chr11 67749623 67749746 -81033726 + MIR SINE MIR 18 145 -117 734 119 0 0 chr11 67749750 67749851 -81033621 + AluSx SINE Alu 1 101 -211 3752 193 46 54 chr11 67749853 67750830 -81032642 - LTR5 LTR ERVK 0 969 1 4327 179 36 49 chr11 67750834 67751800 -81031672 + LTR13 LTR ERVK 1 954 0 1549 82 0 0 chr11 67751801 67751996 -81031476 + AluSx SINE Alu 95 289 -21 2205 78 9 44 chr11 67752010 67752151 -81031321 + AluSx SINE Alu 5 149 -163 2430 50 0 10 chr11 67752151 67752452 -81031020 + AluY SINE Alu 1 298 -13 2205 78 9 44 chr11 67752452 67752629 -81030843 + AluSx SINE Alu 149 312 0 2227 61 7 0 chr11 67752976 67753277 -81030195 + AluSg SINE Alu 2 304 0 255 185 31 0 chr11 67753343 67753408 -81030064 + T-rich Low_complexity Low_complexity 2 68 0 414 153 24 24 chr11 67753455 67753521 -81029951 + MLT1D LTR MaLR 1 69 -436 2122 118 3 0 chr11 67753521 67753818 -81029654 + AluSx SINE Alu 1 298 -14 414 153 24 24 chr11 67753818 67753836 -81029636 + MLT1D LTR MaLR 68 85 -420 770 101 45 101 chr11 67753836 67754034 -81029438 + L1M4 LINE L1 3519 3705 -2441 1007 91 0 0 chr11 67754034 67754166 -81029306 + AluY SINE Alu 1 132 -179 331 240 73 0 chr11 67754784 67754880 -81028592 - MIR SINE MIR -114 148 46 274 340 48 0 chr11 67754937 67755040 -81028432 - MIR SINE MIR -142 120 13 183 330 35 17 chr11 67755196 67755311 -81028161 + L2 LINE L2 2717 2833 -481 279 312 48 24 chr11 67755712 67755837 -81027635 + L2 LINE L2 2932 3059 -213 2348 80 0 0 chr11 67755976 67756276 -81027196 + AluY SINE Alu 1 300 -11 207 280 75 32 chr11 67756293 67756386 -81027086 - MIR SINE MIR -65 197 101 2386 75 0 7 chr11 67756423 67756731 -81026741 + AluSc SINE Alu 1 306 -3 1914 124 17 13 chr11 67756731 67756865 -81026607 + AluSx SINE Alu 1 133 -179 2157 125 0 0 chr11 67756865 67757160 -81026312 + AluSx SINE Alu 1 295 -17 1914 124 17 13 chr11 67757160 67757323 -81026149 + AluSx SINE Alu 133 299 -13 1687 187 40 0 chr11 67757334 67757634 -81025838 + AluJb SINE Alu 1 312 0 418 273 73 33 chr11 67758995 67759145 -81024327 + MIR SINE MIR 21 176 -86 438 208 176 0 chr11 67759540 67759665 -81023807 + MIR SINE MIR 21 167 -95 404 253 162 20 chr11 67760785 67760983 -81022489 + MIR SINE MIR 9 234 -28 370 337 126 0 chr11 67763064 67763089 -81020383 - MIR SINE MIR -18 244 224 2235 95 26 0 chr11 67763089 67763394 -81020078 - AluSp SINE Alu 0 313 1 370 337 126 0 chr11 67763394 67763567 -81019905 - MIR SINE MIR -38 224 21 307 169 0 67 chr11 67764230 67764319 -81019153 - L2 LINE L2 -165 3107 3025 255 398 31 0 chr11 67764797 67764925 -81018547 + MIR SINE MIR 127 258 -4 303 275 0 0 chr11 67765238 67765307 -81018165 - MIR SINE MIR -55 153 85 300 324 21 49 chr11 67766934 67767076 -81016396 - MIR3 SINE MIR -53 155 18 2337 78 3 0 chr11 67769141 67769449 -81014023 - AluSg SINE Alu -1 309 1 254 337 22 0 chr11 67775790 67775882 -81007590 - MER94 DNA DNA -26 108 15 321 308 19 0 chr11 67776087 67776194 -81007278 + L2 LINE L2 3162 3270 -2 185 343 10 30 chr11 67776324 67776423 -81007049 - L2 LINE L2 -231 3041 2945 2293 54 3 27 chr11 67777056 67777351 -81006121 - AluY SINE Alu -23 288 1 211 353 70 26 chr11 67777408 67777564 -81005908 - MIR3 SINE MIR -27 181 19 249 319 133 15 chr11 67778202 67778337 -81005135 - MIR3 SINE MIR -31 177 27 266 346 118 0 chr11 67781511 67781638 -81001834 - MIR3 SINE MIR -37 171 30 371 312 64 7 chr11 67782149 67782290 -81001182 - MIR SINE MIR -80 182 34 378 282 7 87 chr11 67782674 67782823 -81000649 + MIR SINE MIR 54 190 -72 292 321 22 15 chr11 67783570 67783704 -80999768 + MIR3 SINE MIR 27 161 -47 325 250 30 0 chr11 67784254 67784354 -80999118 + MIR SINE MIR 51 153 -55 222 266 168 35 chr11 67785496 67785609 -80997863 - MIR SINE MIR -119 143 16 2134 114 7 7 chr11 67785809 67786107 -80997365 + AluSx SINE Alu 1 298 -14 2025 141 3 0 chr11 67787171 67787475 -80995997 - AluJb SINE Alu -7 305 1 192 328 0 0 chr11 67789265 67789326 -80994146 - MIR SINE MIR -62 146 86 201 147 0 0 chr11 67791180 67791214 -80992258 + (CCCCAG)n Simple_repeat Simple_repeat 1 34 0 213 94 0 0 chr11 67791754 67791786 -80991686 + (T)n Simple_repeat Simple_repeat 1 32 0 258 335 146 5 chr11 67792055 67792240 -80991232 + MIR SINE MIR 38 248 -14 201 243 27 14 chr11 67792485 67792559 -80990913 + (CGG)n Simple_repeat Simple_repeat 1 75 0 209 232 30 131 chr11 67793436 67793490 -80989982 - MIR SINE MIR -69 193 152 2225 93 7 0 chr11 67793490 67793790 -80989682 - AluSx SINE Alu -10 302 1 209 232 30 131 chr11 67793790 67793834 -80989638 - MIR SINE MIR -110 152 105 239 305 124 9 chr11 67794265 67794370 -80989102 + MIR SINE MIR 30 146 -62 401 139 139 0 chr11 67797155 67797241 -80986231 + MER5A DNA MER1_type 8 105 -84 190 192 167 26 chr11 67797194 67797249 -80986223 - MER5A DNA MER1_type -46 143 72 * 2113 103 0 3 chr11 67797249 67797562 -80985910 - AluSg SINE Alu 0 312 1 190 192 167 26 chr11 67797562 67797583 -80985889 - MER5A DNA MER1_type -117 72 55 381 334 130 23 chr11 67797790 67798182 -80985290 - L2 LINE L2 -2 3270 2837 263 285 131 23 chr11 67798234 67798364 -80985108 - L2 LINE L2 -610 2704 2561 21 36 0 0 chr11 67801128 67801156 -80982316 + GC_rich Low_complexity Low_complexity 1 28 0 209 182 18 0 chr11 67802128 67802183 -80981289 + CT-rich Low_complexity Low_complexity 1 56 0 2146 103 0 3 chr11 67802184 67802484 -80980988 - AluSq SINE Alu -10 303 5 907 172 180 19 chr11 67802643 67802867 -80980605 - MER58B DNA MER1_type -2079 341 70 2202 95 7 10 chr11 67802867 67803171 -80980301 + AluSq SINE Alu 1 303 -10 907 172 180 19 chr11 67803171 67803202 -80980270 - MER58B DNA MER1_type -2350 70 45 461 235 188 0 chr11 67803269 67803418 -80980054 - MIR SINE MIR -47 215 39 334 297 137 6 chr11 67805912 67806094 -80977378 - L2 LINE L2 -211 3061 2856 378 310 153 43 chr11 67806221 67806685 -80976787 - L2 LINE L2 -626 2688 2174 196 299 78 0 chr11 67808940 67809017 -80974455 - L3 LINE CR1 -624 953 871 262 230 9 9 chr11 67809077 67809190 -80974282 + (CTGGGG)n Simple_repeat Simple_repeat 6 118 0 186 330 78 0 chr11 67809408 67809511 -80973961 + L2 LINE L2 2954 3064 -208 202 208 129 40 chr11 67809536 67809637 -80973835 - MIR3 SINE MIR -29 179 70 453 274 73 37 chr11 67809800 67809964 -80973508 - MER5A DNA MER1_type 0 189 20 576 340 133 16 chr11 67810869 67811036 -80972436 - L2 LINE L2 -3 3310 3164 2374 70 0 16 chr11 67811036 67811349 -80972123 + AluSc SINE Alu 1 308 -1 576 340 133 16 chr11 67811349 67811608 -80971864 - L2 LINE L2 -149 3164 2834 260 319 116 0 chr11 67811642 67811780 -80971692 + L2 LINE L2 2594 2747 -567 481 303 58 50 chr11 67811903 67812164 -80971308 + L2 LINE L2 2985 3247 -25 310 258 16 76 chr11 67812224 67812425 -80971047 + MIR SINE MIR 28 262 0 331 280 112 9 chr11 67813279 67813386 -80970086 - L2 LINE L2 -8 3305 3188 274 257 129 0 chr11 67814218 67814319 -80969153 + MIR3 SINE MIR 72 185 -23 481 260 110 90 chr11 67814594 67815012 -80968460 + L2 LINE L2 2714 3162 -151 1605 161 48 34 chr11 67815012 67815041 -80968431 - AluJo SINE Alu -17 295 268 2473 84 3 3 chr11 67815041 67815351 -80968121 + AluY SINE Alu 1 310 -1 1605 161 48 34 chr11 67815351 67815612 -80967860 - AluJo SINE Alu -44 268 1 481 260 110 90 chr11 67815612 67815666 -80967806 + L2 LINE L2 3162 3213 -100 324 0 0 0 chr11 67818586 67818622 -80964850 + (TATTG)n Simple_repeat Simple_repeat 2 37 0 1920 143 3 3 chr11 67818624 67818924 -80964548 - AluJb SINE Alu -12 300 1 869 90 38 45 chr11 67818928 67818942 -80964530 - FLAM_C SINE Alu -180 132 119 183 42 0 0 chr11 67818942 67818966 -80964506 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 869 90 38 45 chr11 67818966 67819084 -80964388 - FLAM_C SINE Alu -193 119 1 2273 81 17 7 chr11 67819166 67819463 -80964009 - AluSx SINE Alu -12 300 1 361 302 0 171 chr11 67819465 67819639 -80963833 - L1ME3 LINE L1 -225 5937 5761 2150 113 13 7 chr11 67819639 67819807 -80963665 - AluSq SINE Alu -11 302 130 2150 112 37 3 chr11 67819807 67820102 -80963370 - AluSq SINE Alu -8 305 1 2150 113 13 7 chr11 67820102 67820233 -80963239 - AluSq SINE Alu -183 130 1 361 302 0 171 chr11 67820233 67820288 -80963184 - L1ME3 LINE L1 -401 5761 5693 1069 199 42 12 chr11 67820347 67820588 -80962884 + MER87 LTR ERV1 211 458 -83 401 197 0 0 chr11 67820632 67820698 -80962774 - FRAM/FAM SINE Alu -115 61 1 1699 166 17 24 chr11 67820711 67821001 -80962471 - AluJo SINE Alu -24 288 1 258 164 13 158 chr11 67821001 67821153 -80962319 - L1MC5 LINE L1 -993 6968 6839 676 160 0 53 chr11 67821163 67821294 -80962178 + FLAM_C SINE Alu 11 134 -9 895 226 22 73 chr11 67821313 67821345 -80962127 - L1MC5 LINE L1 -985 6823 6791 2430 97 7 0 chr11 67821345 67821654 -80961818 - AluSp SINE Alu -2 311 1 895 226 22 73 chr11 67821654 67821837 -80961635 - L1MC5 LINE L1 -1017 6791 6600 2526 79 3 0 chr11 67821837 67822142 -80961330 - AluSp SINE Alu -7 306 1 1750 167 3 24 chr11 67822147 67822441 -80961031 - AluJo SINE Alu -24 288 1 2177 95 0 20 chr11 67822451 67822747 -80960725 - AluSc SINE Alu -19 290 1 895 226 22 73 chr11 67822747 67822822 -80960650 - L1MC5 LINE L1 -1221 6587 6542 1760 130 95 11 chr11 67822829 67823114 -80960358 - AluSg1 SINE Alu 0 309 1 1751 182 18 117 chr11 67823169 67823369 -80960103 + L1MB3 LINE L1 4600 4818 -1328 2071 94 72 0 chr11 67823369 67823645 -80959827 + AluSp SINE Alu 1 296 -17 1751 182 18 117 chr11 67823645 67823867 -80959605 + L1MB3 LINE L1 4818 5061 -1085 1764 139 33 53 chr11 67823867 67824169 -80959303 + AluJo SINE Alu 1 296 -16 2527 62 0 10 chr11 67824173 67824481 -80958991 + AluY SINE Alu 1 305 -6 1751 182 18 117 chr11 67824481 67824837 -80958635 + L1MB3 LINE L1 5064 5286 -860 2323 50 7 11 chr11 67824839 67825158 -80958314 + AluY SINE Alu 1 318 0 3698 151 25 57 chr11 67825158 67825502 -80957970 + L1MB3 LINE L1 5433 5787 -396 2835 164 57 2 chr11 67825502 67825990 -80957482 + MLT2B2 LTR ERVL 1 515 0 3698 151 25 57 chr11 67825990 67826008 -80957464 + L1MB3 LINE L1 5787 5804 -379 2104 94 3 50 chr11 67826008 67826325 -80957147 + AluSx SINE Alu 1 303 0 3698 151 25 57 chr11 67826325 67826736 -80956736 + L1MB3 LINE L1 5804 6183 0 839 135 0 64 chr11 67826753 67826894 -80956578 - FLAM_C SINE Alu -1 132 1 308 203 181 14 chr11 67827213 67827351 -80956121 - L1MC4a LINE L1 -1634 6174 6014 1385 164 6 117 chr11 67827351 67827526 -80955946 - AluJo SINE Alu -18 294 101 372 71 0 0 chr11 67827526 67827582 -80955890 + (TTTA)n Simple_repeat Simple_repeat 2 57 0 2265 68 3 51 chr11 67827582 67827877 -80955595 - AluY SINE Alu -30 281 1 1385 164 6 117 chr11 67827877 67828024 -80955448 - AluJo SINE Alu -209 103 7 2575 77 0 0 chr11 67828059 67828370 -80955102 - AluY SINE Alu 0 311 1 2331 111 0 13 chr11 67828408 67828715 -80954757 - AluSx SINE Alu -9 303 1 632 164 66 0 chr11 67828883 67829005 -80954467 - MLT2B2 LTR ERVL 0 515 386 238 57 29 0 chr11 67829017 67829052 -80954420 + Alu SINE Alu 191 226 -74 549 158 0 12 chr11 67829102 67829184 -80954288 - AluJ/FLAM SINE Alu -230 82 2 769 188 27 0 chr11 67829260 67829409 -80954063 - MLT1A1 LTR MaLR -12 353 201 1121 103 6 46 chr11 67829409 67829583 -80953889 - AluSg/x SINE Alu -18 292 126 2229 123 7 0 chr11 67829583 67829892 -80953580 - AluSp SINE Alu -2 311 1 458 165 278 8 chr11 67829895 67830028 -80953444 - MLT1A1 LTR MaLR -157 208 40 2092 117 7 0 chr11 67830090 67830394 -80953078 + AluSp SINE Alu 1 306 0 892 183 35 0 chr11 67830394 67830568 -80952904 + AluJo/FRAM SINE Alu 135 313 0 360 0 0 0 chr11 67830573 67830613 -80952859 + (CA)n Simple_repeat Simple_repeat 2 41 0 445 117 0 0 chr11 67830621 67830681 -80952791 + AluS SINE Alu 2 61 -252 219 36 0 0 chr11 67830681 67830709 -80952763 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 360 0 0 0 chr11 67830714 67830754 -80952718 + (CA)n Simple_repeat Simple_repeat 2 41 0 2059 147 0 0 chr11 67830761 67831068 -80952404 + AluSx SINE Alu 1 307 -5 1259 215 43 38 chr11 67831217 67831372 -80952100 - L1M4 LINE L1 -1854 4292 4139 2214 105 0 17 chr11 67831372 67831695 -80951777 + AluSg SINE Alu 1 310 0 1259 215 43 38 chr11 67831695 67831911 -80951561 - L1M4 LINE L1 -2007 4139 3919 2232 75 14 3 chr11 67831912 67832237 -80951235 - AluSp SINE Alu 0 328 1 652 186 18 0 chr11 67832448 67832561 -80950911 + FLAM_C SINE Alu 2 116 -27 2177 125 0 0 chr11 67832566 67832863 -80950609 - AluSx SINE Alu -15 297 1 2169 108 7 13 chr11 67832983 67833290 -80950182 - AluY SINE Alu -6 305 1 1532 77 5 5 chr11 67833291 67833485 -80949987 - AluSp SINE Alu -12 301 108 2228 122 0 3 chr11 67833485 67833781 -80949691 - AluSx SINE Alu -17 295 1 805 230 0 68 chr11 67833857 67834079 -80949393 + AluSc SINE Alu 2 208 -101 2574 53 0 3 chr11 67834241 67834541 -80948931 - AluY SINE Alu -12 299 1 363 273 78 8 chr11 67834545 67834673 -80948799 + L1M4 LINE L1 4848 4984 -1162 307 271 193 14 chr11 67834673 67834813 -80948659 - L1MEd LINE L1 -5355 764 600 2159 120 0 63 chr11 67834987 67835168 -80948304 - AluSx SINE Alu 0 312 121 247 25 50 0 chr11 67835168 67835208 -80948264 + (TTG)n Simple_repeat Simple_repeat 1 42 0 1541 98 106 39 chr11 67835208 67835463 -80948009 - AluSg SINE Alu -31 279 8 2159 120 0 63 chr11 67835463 67835613 -80947859 - AluSx SINE Alu -189 123 1 2387 83 0 3 chr11 67835617 67835918 -80947554 - AluY SINE Alu -11 300 1 2424 66 10 0 chr11 67835929 67836230 -80947242 - AluY SINE Alu -7 304 1 351 131 48 36 chr11 67836255 67836339 -80947133 + AluY SINE Alu 1 85 -216 2431 70 0 3 chr11 67836527 67836829 -80946643 - AluY SINE Alu -10 301 1 2512 66 3 0 chr11 67836840 67837143 -80946329 - AluY SINE Alu -7 304 1 2394 81 13 10 chr11 67837168 67837478 -80945994 + AluY SINE Alu 1 311 0 180 111 0 0 chr11 67837483 67837510 -80945962 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2628 119 2 53 chr11 67837550 67837986 -80945486 - LTR36 LTR ERV1 0 611 198 1625 122 7 56 chr11 67837966 67838269 -80945203 - LTR36 LTR ERV1 -323 288 1 * 447 388 4 4 chr11 67838501 67838751 -80944721 - LTR36-int LTR ERV1 -252 6870 6621 369 167 42 0 chr11 67838770 67838842 -80944630 - MER49 LTR ERV1 -163 760 686 765 116 67 79 chr11 67838858 67838976 -80944496 - LTR36-int LTR ERV1 -181 6150 6033 2189 103 0 33 chr11 67838976 67839276 -80944196 + AluSg SINE Alu 1 290 -20 765 116 67 79 chr11 67839276 67839321 -80944151 - LTR36-int LTR ERV1 -298 6033 5989 259 171 77 120 chr11 67839345 67839462 -80944010 - LTR36-int LTR ERV1 -306 6025 5914 1347 150 15 22 chr11 67839491 67839655 -80943817 - LTR36-int LTR ERV1 -578 5753 5590 2133 131 0 3 chr11 67839655 67839953 -80943519 - AluSx SINE Alu -15 297 1 1347 150 15 22 chr11 67839953 67840062 -80943410 - LTR36-int LTR ERV1 -741 5590 5482 10709 99 91 111 chr11 67840068 67840375 -80943097 + MER66-int LTR ERV1 4548 4860 -1816 2289 123 0 0 chr11 67840375 67840676 -80942796 - AluSx SINE Alu -11 301 1 10709 99 91 111 chr11 67840676 67840708 -80942764 + MER66-int LTR ERV1 4860 4891 -1785 402 134 0 85 chr11 67840708 67840790 -80942682 + AluS SINE Alu 228 302 -10 10709 99 91 111 chr11 67840790 67841502 -80941970 + MER66-int LTR ERV1 4891 5616 -1060 2292 79 7 26 chr11 67841502 67841805 -80941667 + AluSg SINE Alu 1 297 -13 10709 99 91 111 chr11 67841805 67841916 -80941556 + MER66-int LTR ERV1 5616 5728 -948 188 212 45 76 chr11 67841916 67841982 -80941490 + L3 LINE CR1 609 672 -905 10709 99 91 111 chr11 67841982 67842248 -80941224 + MER66-int LTR ERV1 5728 5998 -678 2572 56 0 3 chr11 67842248 67842551 -80940921 + AluY SINE Alu 1 302 -9 10709 99 91 111 chr11 67842551 67843205 -80940267 + MER66-int LTR ERV1 5998 6676 0 2487 181 51 0 chr11 67843205 67843657 -80939815 + MER66A LTR ERV1 1 475 -3 1411 179 32 32 chr11 67843666 67844007 -80939465 - LTR36-int LTR ERV1 -1912 4351 4011 1249 170 42 0 chr11 67844012 67844224 -80939248 - AluJb SINE Alu -7 305 85 753 103 17 75 chr11 67844225 67844323 -80939149 - LTR36-int LTR ERV1 -1518 3362 3277 2452 88 0 3 chr11 67844323 67844628 -80938844 - AluSq SINE Alu -9 304 1 753 103 17 75 chr11 67844628 67844703 -80938769 - LTR36-int LTR ERV1 -1603 3277 3199 2211 136 0 0 chr11 67844705 67845015 -80938457 + AluSx SINE Alu 1 310 -2 3433 158 15 42 chr11 67845037 67845367 -80938105 - LTR36-int LTR ERV1 -2594 2286 1982 2672 52 3 0 chr11 67845367 67845676 -80937796 - AluY SINE Alu -1 310 1 3433 158 15 42 chr11 67845676 67846015 -80937457 - LTR36-int LTR ERV1 -2898 1982 1635 573 140 11 0 chr11 67846005 67846098 -80937374 - LTR38-int LTR ERV1 -2530 4068 3975 * 1703 180 0 17 chr11 67846123 67846279 -80937193 - AluJo SINE Alu -23 289 139 2257 111 0 3 chr11 67846279 67846577 -80936895 - AluSx SINE Alu -15 297 1 1703 180 0 17 chr11 67846577 67846714 -80936758 - AluJo SINE Alu -173 139 1 25 31 0 0 chr11 67846878 67846910 -80936562 + AT_rich Low_complexity Low_complexity 1 32 0 2572 78 0 0 chr11 67846910 67847219 -80936253 - AluSc SINE Alu 0 309 1 2258 158 31 12 chr11 67847219 67847689 -80935783 - LTR38-int LTR ERV1 -2985 3691 1196 1311 146 158 53 chr11 67847691 67847828 -80935644 - LTR38-int LTR ERV1 -475 1311 1190 2289 109 3 0 chr11 67847828 67848132 -80935340 + AluSg SINE Alu 1 305 -5 1311 146 158 53 chr11 67848132 67848317 -80935155 - LTR38-int LTR ERV1 -596 1190 955 2538 87 3 0 chr11 67848823 67849133 -80934339 + AluSx SINE Alu 1 311 -1 3065 115 61 130 chr11 67849852 67850506 -80932966 - LTR36 LTR ERV1 0 611 3 990 181 12 0 chr11 67850533 67850699 -80932773 + AluJb SINE Alu 136 303 -9 2384 100 0 0 chr11 67850817 67851127 -80932345 - AluSx SINE Alu -2 310 1 1829 163 14 0 chr11 67851403 67851698 -80931774 + 7SLRNA srpRNA srpRNA 10 308 -12 529 259 31 113 chr11 67851849 67851937 -80931535 - MIR SINE MIR 0 262 168 1507 181 41 24 chr11 67851937 67852229 -80931243 + AluJo SINE Alu 1 297 -15 529 259 31 113 chr11 67852229 67852406 -80931066 - MIR SINE MIR -94 168 19 216 0 0 0 chr11 67852416 67852440 -80931032 + (A)n Simple_repeat Simple_repeat 1 24 0 1514 134 0 9 chr11 67852477 67852694 -80930778 - AluJo SINE Alu -97 215 1 234 340 28 28 chr11 67852880 67853021 -80930451 - L3 LINE CR1 -179 1398 1258 257 254 237 9 chr11 67853027 67853141 -80930331 - L2 LINE L2 -2 3311 3172 2462 57 10 0 chr11 67853585 67853884 -80929588 - AluY SINE Alu -9 302 1 606 68 0 0 chr11 67854102 67854190 -80929282 + (CA)n Simple_repeat Simple_repeat 1 88 0 1832 179 3 0 chr11 67854295 67854597 -80928875 + AluJb SINE Alu 1 303 -9 2426 252 64 43 chr11 67854790 67855426 -80928046 - MER66A-int LTR ERV1 -5741 935 238 2238 119 0 0 chr11 67855426 67855719 -80927753 - AluSx SINE Alu -19 293 1 2426 252 64 43 chr11 67855719 67855940 -80927532 - MER66A-int LTR ERV1 -6438 238 23 1261 190 87 80 chr11 67856086 67856521 -80926951 - MER66A LTR ERV1 0 478 97 717 186 0 0 chr11 67856561 67856717 -80926755 - L1 LINE L1 -1593 4553 4398 243 0 0 0 chr11 67856717 67856744 -80926728 + (T)n Simple_repeat Simple_repeat 1 27 0 245 355 14 14 chr11 67856801 67857012 -80926460 - L1 LINE L1 -1812 4334 4124 2181 117 0 61 chr11 67857139 67857288 -80926184 + AluSx SINE Alu 1 122 -190 1633 97 101 35 chr11 67857288 67857585 -80925887 + AluSg SINE Alu 6 319 0 2181 117 0 61 chr11 67857585 67857760 -80925712 + AluSx SINE Alu 122 306 -6 307 271 193 14 chr11 67857941 67858081 -80925391 + L1MEd LINE L1 600 764 -5355 363 273 78 8 chr11 67858081 67858209 -80925263 - L1M4 LINE L1 -1162 4984 4848 2322 75 3 10 chr11 67858213 67858521 -80924951 + AluY SINE Alu 1 306 -5 240 203 47 0 chr11 67858522 67858586 -80924886 + L1MB3 LINE L1 4987 5053 -1093 669 217 42 0 chr11 67858660 67858872 -80924600 + L1MB3 LINE L1 5059 5279 -867 2433 42 0 11 chr11 67858879 67859200 -80924272 + AluY SINE Alu 1 318 0 3704 151 25 55 chr11 67859200 67859544 -80923928 + L1MB3 LINE L1 5433 5786 -397 2835 164 57 2 chr11 67859544 67860032 -80923440 + MLT2B2 LTR ERVL 1 515 0 3704 151 25 55 chr11 67860032 67860049 -80923423 + L1MB3 LINE L1 5786 5802 -381 2104 94 3 50 chr11 67860049 67860366 -80923106 + AluSx SINE Alu 1 303 0 3704 151 25 55 chr11 67860366 67860777 -80922695 + L1MB3 LINE L1 5802 6183 0 839 135 0 64 chr11 67860794 67860935 -80922537 - FLAM_C SINE Alu -1 132 1 257 221 199 15 chr11 67861254 67861390 -80922082 - L1MC4a LINE L1 -1634 6174 6014 1389 164 6 117 chr11 67861390 67861565 -80921907 - AluJo SINE Alu -18 294 101 408 67 0 0 chr11 67861565 67861625 -80921847 + (TTTA)n Simple_repeat Simple_repeat 2 61 0 2278 74 0 51 chr11 67861625 67861921 -80921551 - AluY SINE Alu -30 281 1 1389 164 6 117 chr11 67861921 67862068 -80921404 - AluJo SINE Alu -209 103 7 2605 74 0 0 chr11 67862102 67862413 -80921059 - AluY SINE Alu 0 311 1 2337 111 0 13 chr11 67862451 67862758 -80920714 - AluSx SINE Alu -9 303 1 641 164 66 0 chr11 67862926 67863048 -80920424 - MLT2B2 LTR ERVL 0 515 386 241 57 29 0 chr11 67863060 67863095 -80920377 + Alu SINE Alu 193 228 -74 511 158 0 12 chr11 67863145 67863227 -80920245 - AluJ/FLAM SINE Alu -230 82 2 784 188 27 0 chr11 67863303 67863452 -80920020 - MLT1A1 LTR MaLR -12 353 201 1126 103 6 46 chr11 67863452 67863626 -80919846 - AluSg/x SINE Alu -18 292 126 1393 194 16 25 chr11 67863626 67863940 -80919532 - AluSp SINE Alu -2 311 1 654 233 15 68 chr11 67863940 67863985 -80919487 + L1M4 LINE L1 4102 4148 -1998 2212 106 0 7 chr11 67863985 67864308 -80919164 - AluSg SINE Alu 0 321 1 654 233 15 68 chr11 67864308 67864467 -80919005 + L1M4 LINE L1 4148 4296 -1850 2072 147 0 0 chr11 67864612 67864919 -80918553 - AluSx SINE Alu -5 307 1 463 16 31 0 chr11 67864926 67864990 -80918482 + (TG)n Simple_repeat Simple_repeat 2 67 0 834 217 32 0 chr11 67864990 67865147 -80918325 - AluJo SINE Alu -24 288 127 430 155 0 70 chr11 67865150 67865162 -80918310 - L1M4 LINE L1 -2147 3999 3988 2293 67 0 3 chr11 67865162 67865444 -80918028 - AluY SINE Alu -30 281 1 430 155 0 70 chr11 67865444 67865560 -80917912 - L1M4 LINE L1 -2158 3988 3880 1220 168 5 15 chr11 67865565 67865767 -80917705 - AluJo SINE Alu -100 212 13 312 191 11 43 chr11 67865767 67865861 -80917611 - L1M4 LINE L1 -1482 4664 4574 748 317 15 33 chr11 67865960 67866673 -80916799 + L1PA6 LINE L1 5435 5825 -329 3184 205 11 9 chr11 67866004 67866189 -80917283 + L1MB4 LINE L1 5474 5657 -523 2205 93 7 0 chr11 67866189 67866506 -80916966 + AluSg SINE Alu 1 319 0 3184 205 11 9 chr11 67866506 67866974 -80916498 + L1MB4 LINE L1 5657 6129 -51 447 267 55 0 chr11 67867020 67867166 -80916306 - L1M4 LINE L1 -3630 2516 2363 2256 133 3 0 chr11 67867492 67867801 -80915671 - AluSx SINE Alu -2 310 1 22 0 0 0 chr11 67867938 67867960 -80915512 + AT_rich Low_complexity Low_complexity 1 22 0 2326 75 3 3 chr11 67868048 67868354 -80915118 - AluY SINE Alu 0 306 1 254 303 95 33 chr11 67868463 67868674 -80914798 + L1ME4a LINE L1 5255 5478 -2330 418 208 13 0 chr11 67868682 67868759 -80914713 + AluJb SINE Alu 2 79 -233 249 136 0 23 chr11 67868759 67868803 -80914669 + MER4D LTR ERV1 760 802 -70 340 213 53 43 chr11 67868829 67868923 -80914549 + L1MC4 LINE L1 6615 6709 -1333 210 133 50 0 chr11 67868923 67868931 -80914541 + (TA)n Simple_repeat Simple_repeat 2 8 -56 1893 101 98 29 chr11 67868931 67869279 -80914193 + THE1C LTR MaLR 3 374 -1 210 133 50 0 chr11 67869279 67869330 -80914142 + (TA)n Simple_repeat Simple_repeat 8 64 0 313 320 184 55 chr11 67869336 67869824 -80913648 + L1ME4a LINE L1 5484 6034 -87 452 149 0 0 chr11 67869892 67869959 -80913513 + AluS SINE Alu 1 67 -245 3835 70 18 0 chr11 67869959 67870461 -80913011 + LTR13 LTR ERVK 1 511 -496 * 4794 65 12 5 chr11 67870459 67871101 -80912371 + LTR13 LTR ERVK 361 1007 0 1456 160 0 13 chr11 67871102 67871333 -80912139 + AluJb SINE Alu 64 291 -21 1077 201 67 71 chr11 67871348 67871784 -80911688 - MLT2B1 LTR ERVL 0 414 3 592 278 77 0 chr11 67871859 67872028 -80911444 - LTR16C LTR ERVL -222 269 88 1537 139 39 25 chr11 67872595 67872876 -80910596 - AluJo SINE Alu -18 294 10 370 140 186 5 chr11 67872897 67872994 -80910478 + AluSg SINE Alu 1 97 -203 434 153 0 24 chr11 67872994 67873007 -80910465 - AluS SINE Alu -2 308 296 2047 120 58 0 chr11 67873007 67873298 -80910174 - AluSg SINE Alu -2 308 1 434 153 0 24 chr11 67873298 67873369 -80910103 - AluS SINE Alu -14 296 226 1092 145 66 0 chr11 67873371 67873502 -80909970 - AluSx SINE Alu -135 177 31 3168 86 117 16 chr11 67873502 67873926 -80909546 + MER41A LTR ERV1 1 485 -69 2188 71 8 0 chr11 67873926 67874194 -80909278 - AluSx SINE Alu -12 300 31 3168 86 117 16 chr11 67874194 67874272 -80909200 + MER41A LTR ERV1 485 554 0 1092 145 66 0 chr11 67874272 67874306 -80909166 - AluSx SINE Alu -281 31 1 2048 95 78 28 chr11 67874311 67874615 -80908857 + MER51B LTR ERV1 1 327 -50 2470 53 27 13 chr11 67874615 67874916 -80908556 - AluY SINE Alu -6 305 1 2048 95 78 28 chr11 67874916 67874970 -80908502 + MER51B LTR ERV1 327 377 0 604 109 0 0 chr11 67874970 67875062 -80908410 - L1MC3 LINE L1 -332 7453 7362 249 143 0 0 chr11 67875065 67875100 -80908372 - AluSx SINE Alu -267 35 1 1178 136 19 34 chr11 67875103 67875309 -80908163 + AluJb SINE Alu 105 307 -5 1672 108 112 7 chr11 67875318 67875595 -80907877 + AluSc SINE Alu 1 306 -3 2080 108 14 14 chr11 67877837 67878124 -80905348 + AluSx SINE Alu 1 287 -25 272 311 68 8 chr11 67878133 67878265 -80905207 + MIR SINE MIR 82 221 -41 211 276 265 0 chr11 67878839 67878937 -80904535 - L2 LINE L2 -20 3252 3129 2406 80 7 3 chr11 67879302 67879603 -80903869 + AluY SINE Alu 1 302 -9 886 122 0 38 chr11 67879613 67879866 -80903606 + AluJb SINE Alu 2 300 -12 284 280 140 0 chr11 67882255 67882355 -80901117 - MIR SINE MIR -131 131 18 220 273 0 0 chr11 67884759 67884814 -80898658 + CT-rich Low_complexity Low_complexity 2 56 0 4707 121 23 8 chr11 67885021 67885750 -80897722 - MER66-int LTR ERV1 -1329 5347 4608 2486 75 0 0 chr11 67885753 67886061 -80897411 + AluY SINE Alu 1 308 -3 1282 69 5 69 chr11 67886063 67886252 -80897220 + AluSg/x SINE Alu 136 312 0 2340 185 73 96 chr11 67886259 67886720 -80896752 + L1MC5 LINE L1 6625 7095 -866 2393 86 0 3 chr11 67886720 67887011 -80896461 - AluSx SINE Alu -22 290 1 2340 185 73 96 chr11 67887011 67887143 -80896329 + L1MC5 LINE L1 7095 7228 -733 1972 125 0 27 chr11 67887143 67887438 -80896034 + AluSx SINE Alu 1 287 -25 183 80 0 0 chr11 67887440 67887465 -80896007 + (TG)n Simple_repeat Simple_repeat 2 26 0 2340 185 73 96 chr11 67887465 67887705 -80895767 + L1MC5 LINE L1 7229 7443 -518 250 339 26 26 chr11 67887780 67887975 -80895497 + L1 LINE L1 4003 4197 -1949 316 287 33 113 chr11 67888063 67888145 -80895327 + L1 LINE L1 4256 4343 -1803 1262 187 18 0 chr11 67888145 67888364 -80895108 + MER58A DNA MER1_type 2 224 0 316 287 33 113 chr11 67888364 67888421 -80895051 + L1 LINE L1 4343 4403 -1743 1537 189 10 52 chr11 67888421 67888728 -80894744 - AluJo SINE Alu -18 294 1 316 287 33 113 chr11 67888728 67888862 -80894610 + L1 LINE L1 4403 4508 -1638 2205 199 71 2 chr11 67888912 67889390 -80894082 - MER90 LTR ERV1 -6 608 98 1760 164 27 7 chr11 67889609 67889908 -80893564 + AluJb SINE Alu 3 307 -5 2232 109 0 0 chr11 67890119 67890413 -80893059 + AluSq SINE Alu 1 294 -19 1478 140 18 68 chr11 67890440 67890718 -80892754 - AluJb SINE Alu -26 286 23 914 203 6 16 chr11 67890728 67890910 -80892562 + AluJb SINE Alu 120 299 -13 467 162 17 51 chr11 67890918 67891035 -80892437 + L1ME3 LINE L1 6050 6162 0 2170 125 7 0 chr11 67891044 67891339 -80892133 + AluSx SINE Alu 1 297 -15 1901 117 11 4 chr11 67891735 67892000 -80891472 + AluJo SINE Alu 29 295 -17 446 261 50 56 chr11 67892228 67892279 -80891193 + MIR SINE MIR 3 53 -209 2288 102 10 3 chr11 67892279 67892582 -80890890 + AluSx SINE Alu 2 306 -6 446 261 50 56 chr11 67892582 67892750 -80890722 + MIR SINE MIR 53 224 -38 206 282 14 14 chr11 67895671 67895742 -80887730 + L2 LINE L2 2986 3056 -216 756 225 0 68 chr11 67896158 67896380 -80887092 - AluSc SINE Alu -101 208 2 2255 118 0 3 chr11 67896456 67896752 -80886720 + AluSx SINE Alu 1 295 -17 1532 77 5 5 chr11 67896752 67896946 -80886526 + AluSp SINE Alu 108 301 -12 2161 111 7 13 chr11 67896947 67897254 -80886218 + AluY SINE Alu 1 305 -6 2184 125 0 0 chr11 67897374 67897671 -80885801 + AluSx SINE Alu 1 297 -15 604 186 18 0 chr11 67897676 67897789 -80885683 - FLAM_C SINE Alu -27 116 2 2232 126 3 0 chr11 67898000 67898309 -80885163 + AluSx SINE Alu 1 310 -2 1917 127 3 39 chr11 67898331 67898661 -80884811 - MER83B-int LTR ERV1 -2594 2286 1969 1284 82 5 49 chr11 67898661 67898845 -80884627 - AluSx SINE Alu -1 309 134 2471 78 0 0 chr11 67898847 67899155 -80884317 - AluY SINE Alu -3 308 1 6337 112 15 46 chr11 67899158 67900197 -80883275 + MER66-int LTR ERV1 4608 5614 -1062 189 0 0 0 chr11 67901729 67901750 -80881722 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 4096 161 40 10 chr11 67901821 67902516 -80880956 + MER66-int LTR ERV1 5605 6320 -356 1992 132 42 0 chr11 67902516 67902804 -80880668 + AluSx SINE Alu 1 300 -12 5983 68 35 21 chr11 67902911 67903755 -80879717 + SVA Other Other 1 856 -530 1000 65 8 8 chr11 67903855 67903979 -80879493 - AluSx SINE Alu -188 124 1 491 122 0 0 chr11 67904008 67904082 -80879390 + AluJ/FRAM SINE Alu 225 298 -14 1071 234 102 39 chr11 67904084 67904210 -80879262 + L1M4 LINE L1 3749 3866 -2280 2397 57 14 0 chr11 67904210 67904520 -80878952 + AluSp SINE Alu 1 314 0 1071 234 102 39 chr11 67904520 67904864 -80878608 + L1M4 LINE L1 3866 4258 -1888 1909 156 0 3 chr11 67904864 67905152 -80878320 + AluJo SINE Alu 11 297 -15 1071 234 102 39 chr11 67905152 67905190 -80878282 + L1M4 LINE L1 4258 4292 -1854 336 211 68 135 chr11 67905195 67905264 -80878208 + L1M4 LINE L1 4255 4327 -1819 2082 111 47 3 chr11 67905264 67905562 -80877910 - AluSq SINE Alu 0 313 3 1940 144 0 30 chr11 67905564 67905869 -80877603 - AluJb SINE Alu -16 296 1 336 211 68 135 chr11 67905869 67905929 -80877543 + L1M4 LINE L1 4328 4378 -1768 1204 112 0 0 chr11 67905934 67906095 -80877377 + AluSq SINE Alu 152 312 -1 1730 209 63 41 chr11 67906113 67906698 -80876774 + L1M4 LINE L1 4399 4996 -1150 2145 112 0 14 chr11 67906700 67906996 -80876476 + AluSx SINE Alu 3 294 -18 1949 105 51 44 chr11 67906999 67907293 -80876179 + AluSq SINE Alu 1 296 -17 1246 237 117 0 chr11 67907309 67907626 -80875846 + MER66A LTR ERV1 85 438 -40 3008 180 26 50 chr11 67907635 67907884 -80875588 - L1 LINE L1 -1482 4664 4410 2425 74 0 0 chr11 67907884 67908222 -80875250 - AluSq SINE Alu 0 338 1 3008 180 26 50 chr11 67908222 67908422 -80875050 - L1 LINE L1 -1736 4410 4207 703 253 0 0 chr11 67908422 67908576 -80874896 + FRAM SINE Alu 2 155 -11 3008 180 26 50 chr11 67908576 67908897 -80874575 - L1 LINE L1 -1939 4207 3911 4559 139 29 35 chr11 67908899 67908958 -80874514 + L1MA8 LINE L1 4433 4491 -1800 2234 130 0 0 chr11 67908958 67909259 -80874213 + AluSg SINE Alu 1 301 -9 4559 139 29 35 chr11 67909259 67910230 -80873242 + L1MA8 LINE L1 4491 5466 -825 2101 135 0 25 chr11 67910230 67910548 -80872924 + AluSx SINE Alu 1 310 -2 4559 139 29 35 chr11 67910548 67910925 -80872547 + L1MA8 LINE L1 5466 5828 -463 2234 122 10 0 chr11 67910925 67911229 -80872243 + AluSx SINE Alu 1 307 -5 4559 139 29 35 chr11 67911229 67911354 -80872118 + L1MA8 LINE L1 5828 5952 -339 1586 157 27 55 chr11 67911354 67911412 -80872060 + AluJo SINE Alu 1 59 -253 2486 96 0 0 chr11 67911412 67911715 -80871757 - AluSc SINE Alu -6 303 1 1586 157 27 55 chr11 67911715 67911949 -80871523 + AluJo SINE Alu 59 285 -27 1859 155 33 36 chr11 67911972 67912474 -80870998 + MLT2A2 LTR ERVL 36 546 -8 411 100 0 88 chr11 67912478 67912558 -80870914 - L1MA7 LINE L1 -245 6046 5974 708 158 98 0 chr11 67912558 67912691 -80870781 - MER66A-int LTR ERV1 -133 6543 6398 * 1404 192 47 27 chr11 67912689 67913066 -80870406 - MER66A-int LTR ERV1 -1585 6171 4607 390 236 36 45 chr11 67913098 67913208 -80870264 - MER4D LTR ERV1 -712 160 52 10318 183 117 113 chr11 67913208 67915006 -80868466 - MER66A-int LTR ERV1 -2224 4452 2664 1234 177 5 14 chr11 67915006 67915221 -80868251 - AluJb SINE Alu -15 297 85 10318 183 117 113 chr11 67915221 67916322 -80867150 - MER66A-int LTR ERV1 -4012 2664 1570 2408 105 0 3 chr11 67916322 67916635 -80866837 - AluSq SINE Alu -1 312 1 10318 183 117 113 chr11 67916635 67917177 -80866295 - MER66A-int LTR ERV1 -5106 1570 1032 2054 148 3 19 chr11 67917177 67917494 -80865978 + AluJb SINE Alu 1 312 0 10318 183 117 113 chr11 67917494 67918132 -80865340 - MER66A-int LTR ERV1 -5644 1032 2 262 193 131 103 chr11 67918152 67918297 -80865175 - MER66A-int LTR ERV1 -6527 149 1 1166 207 59 126 chr11 67918297 67918483 -80864989 - MER66A LTR ERV1 0 478 281 2073 121 4 0 chr11 67918483 67918788 -80864684 + AluSx SINE Alu 1 306 0 2190 129 10 0 chr11 67918791 67919093 -80864379 + AluSg SINE Alu 2 306 -4 1166 207 59 126 chr11 67919093 67919401 -80864071 - MER66A LTR ERV1 -199 279 97 690 241 6 6 chr11 67919467 67919629 -80863843 - MER74B LTR ERVL -250 372 211 235 192 19 0 chr11 67919664 67919716 -80863756 - MER74B LTR ERVL -569 53 1 371 307 18 0 chr11 67919724 67919838 -80863634 + ERVL LTR ERVL 4724 4839 -925 1061 215 14 0 chr11 67919841 67920060 -80863412 - MLT1A1 LTR MaLR 0 365 144 269 254 29 43 chr11 67920442 67920580 -80862892 - L1M4 LINE L1 -838 5308 5173 1959 157 25 0 chr11 67920582 67920939 -80862533 + L1 LINE L1 4672 5037 -1109 951 103 0 0 chr11 67920941 67921058 -80862414 - AluSg SINE Alu -192 118 2 2738 7 0 0 chr11 67921078 67921366 -80862106 - AluYa5 SINE Alu -23 288 1 2657 208 19 36 chr11 67921372 67921597 -80861875 - L1M4 LINE L1 -1447 4699 4472 2600 56 0 7 chr11 67921597 67921903 -80861569 - AluY SINE Alu -7 304 1 2657 208 19 36 chr11 67921903 67922614 -80860858 - L1M4 LINE L1 -1674 4472 2490 857 119 0 8 chr11 67922615 67922733 -80860739 + AluJo SINE Alu 1 117 -195 702 100 0 6 chr11 67922733 67922994 -80860478 - AluY SINE Alu -2 309 3 639 158 0 86 chr11 67922999 67923138 -80860334 + AluJo SINE Alu 105 231 -81 250 125 0 0 chr11 67923148 67923188 -80860284 - Alu SINE Alu -9 293 254 890 234 39 13 chr11 67923189 67923271 -80860201 - L1M4 LINE L1 -2035 4111 4033 2531 60 0 3 chr11 67923271 67923572 -80859900 - AluY SINE Alu -11 300 1 890 234 39 13 chr11 67923572 67923720 -80859752 - L1M4 LINE L1 -2113 4033 3875 3026 154 82 5 chr11 67923788 67924372 -80859100 - L1MD1 LINE L1 -37 6205 5577 2004 158 3 0 chr11 67924373 67924671 -80858801 + AluJb SINE Alu 1 299 -13 758 269 58 25 chr11 67924672 67924999 -80858473 - L1M4 LINE L1 -1566 4580 4243 1902 171 0 0 chr11 67925080 67925372 -80858100 - AluJb SINE Alu -15 297 6 1654 205 0 13 chr11 67925379 67925677 -80857795 - AluJo SINE Alu -18 294 1 894 304 108 8 chr11 67925752 67926374 -80857098 - L1M4 LINE L1 -1440 4706 4023 11118 31 6 99 chr11 67926716 67928243 -80855229 - SVA Other Other 0 1386 2 2038 122 42 0 chr11 67928373 67928659 -80854813 - AluSg SINE Alu -12 298 1 3029 204 99 11 chr11 67928980 67929689 -80853783 + MER21B LTR ERV1 82 852 -11 1744 183 153 58 chr11 67929723 67930074 -80853398 + Tigger6b DNA MER2_type 3 320 -1277 2332 103 3 13 chr11 67930074 67930384 -80853088 + AluSx SINE Alu 1 307 -5 1744 183 153 58 chr11 67930384 67930519 -80852953 + Tigger6b DNA MER2_type 320 441 -1156 2278 151 44 7 chr11 67930519 67930930 -80852542 + MSTB LTR MaLR 1 426 0 1744 183 153 58 chr11 67930930 67930973 -80852499 + Tigger6b DNA MER2_type 441 583 -1014 809 118 110 0 chr11 67930973 67931100 -80852372 - FLAM_C SINE Alu 0 143 3 1730 157 50 13 chr11 67931103 67931421 -80852051 + Tigger6b DNA MER2_type 561 890 -707 881 186 13 0 chr11 67931421 67931577 -80851895 - AluJo SINE Alu -8 294 137 1314 123 5 5 chr11 67931599 67931786 -80851686 + AluSx SINE Alu 1 187 -125 581 77 0 0 chr11 67931787 67931865 -80851607 + AluSg SINE Alu 54 131 -179 783 181 0 8 chr11 67931870 67931997 -80851475 - AluJo SINE Alu -175 127 2 906 142 68 0 chr11 67932060 67932222 -80851250 + Tigger6b DNA MER2_type 1081 1253 -344 2420 100 0 0 chr11 67932226 67932526 -80850946 - AluSq SINE Alu -13 300 1 1912 142 0 65 chr11 67932526 67932850 -80850622 - AluJo SINE Alu -9 303 1 236 285 30 111 chr11 67932909 67933096 -80850376 - HAL1b LINE L1 -752 596 436 2406 61 3 14 chr11 67933096 67933391 -80850081 + AluY SINE Alu 1 292 -19 236 285 30 111 chr11 67933391 67933473 -80849999 - HAL1b LINE L1 -912 436 349 2147 113 0 3 chr11 67933488 67933771 -80849701 + AluSx SINE Alu 1 282 -30 1510 133 48 88 chr11 67933847 67934201 -80849271 - MER49 LTR ERV1 -583 340 1 371 275 13 54 chr11 67934302 67934378 -80849094 - MLT1I LTR MaLR -195 214 145 2319 95 10 0 chr11 67934378 67934674 -80848798 - AluSx SINE Alu -13 299 1 371 275 13 54 chr11 67934674 67934746 -80848726 - MLT1I LTR MaLR -264 145 72 377 306 47 31 chr11 67935045 67935238 -80848234 + L1ME LINE L1 5596 5791 -379 1785 101 12 19 chr11 67936077 67936334 -80847138 - AluSq SINE Alu -56 257 3 2175 121 17 0 chr11 67936380 67936677 -80846795 - AluSx SINE Alu -7 305 4 196 254 127 0 chr11 67937053 67937116 -80846356 + MIR SINE MIR 82 152 -56 2135 87 47 0 chr11 67938036 67938312 -80845160 - AluSx SINE Alu -23 289 1 618 259 41 0 chr11 67939462 67939609 -80843863 - MIR SINE MIR 0 262 110 301 180 45 56 chr11 67939665 67939754 -80843718 + MIR SINE MIR 60 147 -61 2305 92 3 3 chr11 67940047 67940342 -80843130 - AluSc SINE Alu -14 295 1 230 319 56 31 chr11 67940816 67940976 -80842496 + L2 LINE L2 2890 3053 -219 2212 98 3 10 chr11 67942043 67942339 -80841133 - AluSp SINE Alu -19 294 1 663 194 76 81 chr11 67942339 67942550 -80840922 - L1ME LINE L1 -478 5684 5475 338 172 37 26 chr11 67942567 67942649 -80840823 - FLAM_A SINE Alu -2 131 55 669 265 142 5 chr11 67942719 67942938 -80840534 - L1ME LINE L1 -1334 4812 4564 373 267 27 40 chr11 67942963 67943113 -80840359 - L1ME LINE L1 -673 5489 5342 693 100 42 0 chr11 67943213 67943333 -80840139 + AluSg/x SINE Alu 180 304 -6 1413 218 86 59 chr11 67944243 67944785 -80838687 + MLT1F1 LTR MaLR 11 559 -8 199 279 70 23 chr11 67944790 67944876 -80838596 - MIR3 SINE MIR -31 177 88 425 248 53 0 chr11 67945016 67945129 -80838343 - L2 LINE L2 0 3313 3195 193 351 13 0 chr11 67945235 67945312 -80838160 - MIR SINE MIR -73 135 58 264 219 0 2 chr11 67945362 67945422 -80838050 - MIR SINE MIR -63 145 93 209 250 191 0 chr11 67945488 67945556 -80837916 + MIR SINE MIR 35 115 -93 713 244 107 13 chr11 67946441 67946666 -80836806 - MIR SINE MIR -16 246 1 220 220 60 0 chr11 67948663 67948713 -80834759 - L2 LINE L2 -62 3251 3199 532 262 220 5 chr11 67949054 67949268 -80834204 - MIR SINE MIR -1 261 2 2266 103 7 0 chr11 67949761 67950053 -80833419 - AluSx SINE Alu -18 294 1 1793 164 113 8 chr11 67950070 67950461 -80833011 - MSTB1 LTR MaLR 0 432 1 341 259 214 0 chr11 67950912 67951024 -80832448 + MIR SINE MIR 9 144 -118 445 349 7 13 chr11 67951094 67951243 -80832229 + MER91B DNA MER1_type 43 190 0 2055 122 27 10 chr11 67951244 67951538 -80831934 - AluJo SINE Alu -13 299 1 237 286 38 19 chr11 67951854 67951959 -80831513 - L2 LINE L2 -172 3100 2994 2271 103 0 29 chr11 67951960 67952270 -80831202 + AluSx SINE Alu 3 303 -9 284 265 72 0 chr11 67952270 67952353 -80831119 - MLT1K LTR MaLR -409 179 91 352 288 53 30 chr11 67952354 67952486 -80830986 - MLT1K LTR MaLR -441 147 13 283 248 16 24 chr11 67958011 67958136 -80825336 + (TG)n Simple_repeat Simple_repeat 1 124 0 2394 99 0 6 chr11 67958179 67958492 -80824980 - AluY SINE Alu 0 311 1 187 250 59 15 chr11 67958654 67958722 -80824750 - L2 LINE L2 -573 2741 2671 2114 117 10 32 chr11 67959178 67959520 -80823952 - AluSx SINE Alu 0 312 3 349 292 73 7 chr11 67960078 67960215 -80823257 + MIR SINE MIR 3 148 -114 678 178 23 81 chr11 67960215 67960389 -80823083 + FRAM SINE Alu 1 162 -14 1527 175 0 29 chr11 67960442 67960751 -80822721 + AluSx SINE Alu 1 300 -12 1478 133 29 17 chr11 67960824 67961065 -80822407 + MER1B DNA MER1_type 96 339 0 639 159 28 0 chr11 67961171 67961278 -80822194 - AluSp SINE Alu -67 246 137 2370 86 0 16 chr11 67961301 67961615 -80821857 - AluY SINE Alu -2 309 1 682 327 88 8 chr11 67961663 67962027 -80821445 - HERVL LTR ERVL -1529 4125 3733 1315 190 0 35 chr11 67962027 67962259 -80821213 - AluJo SINE Alu -87 225 2 237 65 0 0 chr11 67962281 67962312 -80821160 + (TTCC)n Simple_repeat Simple_repeat 4 34 0 2306 92 6 52 chr11 67962312 67962640 -80820832 - AluSq SINE Alu 0 313 1 597 214 32 80 chr11 67962641 67962667 -80820805 + MER63 DNA MER1_type 632 658 -403 968 222 77 0 chr11 67962667 67962874 -80820598 - MER58A DNA MER1_type -1 223 1 597 214 32 80 chr11 67962874 67963025 -80820447 + MER63 DNA MER1_type 658 802 -259 1360 189 80 7 chr11 67963025 67963311 -80820161 + AluJo SINE Alu 1 307 -5 589 103 0 141 chr11 67963312 67963358 -80820114 + MER63 DNA MER1_type 869 920 -141 * 2357 102 0 0 chr11 67963358 67963663 -80819809 - AluSg SINE Alu -5 305 1 589 103 0 141 chr11 67963663 67963716 -80819756 + MER63 DNA MER1_type 920 941 -120 2292 109 0 0 chr11 67963716 67964009 -80819463 - AluSx SINE Alu -15 297 5 589 103 0 141 chr11 67964009 67964064 -80819408 + MER63 DNA MER1_type 941 1002 -59 357 24 0 0 chr11 67964067 67964109 -80819363 + (T)n Simple_repeat Simple_repeat 1 42 0 28 0 0 0 chr11 67964131 67964159 -80819313 + GC_rich Low_complexity Low_complexity 1 28 0 2296 93 0 3 chr11 67964262 67964551 -80818921 - AluSg SINE Alu -22 288 1 197 156 0 0 chr11 67964629 67964674 -80818798 - L2 LINE L2 -334 2979 2935 218 238 42 16 chr11 67965198 67965278 -80818194 - MIR SINE MIR -61 147 88 235 297 121 18 chr11 67965699 67965864 -80817608 + L1MC4 LINE L1 5407 5588 -2197 219 192 55 41 chr11 67966092 67966148 -80817324 + MIR SINE MIR 66 125 -137 2351 115 0 0 chr11 67966148 67966460 -80817012 - AluSx SINE Alu 0 312 1 219 192 55 41 chr11 67966460 67966476 -80816996 + MIR SINE MIR 125 139 -123 216 241 0 0 chr11 67966707 67966786 -80816686 + (TA)n Simple_repeat Simple_repeat 2 80 0 232 196 0 0 chr11 67966789 67966840 -80816632 + L1MC4 LINE L1 6653 6703 -1339 860 141 8 0 chr11 67966855 67966983 -80816489 - FLAM_C SINE Alu -14 129 1 2306 96 3 10 chr11 67966993 67967295 -80816177 - AluSp SINE Alu -13 300 1 644 217 20 26 chr11 67967295 67967441 -80816031 + MIR SINE MIR 117 261 -1 2272 98 3 0 chr11 67967581 67967899 -80815573 + AluSp SINE Alu 1 313 0 463 206 71 84 chr11 67968091 67968246 -80815226 - L2 LINE L2 0 3313 3161 361 211 61 114 chr11 67968513 67968556 -80814916 + MER5B DNA MER1_type 2 46 -132 2221 105 13 16 chr11 67968556 67968869 -80814603 - AluSx SINE Alu 0 312 1 361 211 61 114 chr11 67968869 67968939 -80814533 + MER5B DNA MER1_type 46 109 -69 401 341 6 6 chr11 67969022 67969198 -80814274 - L1MEc LINE L1 -6185 211 36 210 307 57 62 chr11 67969225 67969417 -80814055 + L2 LINE L2 3075 3265 -7 2031 135 0 0 chr11 67969585 67969866 -80813606 + AluSx SINE Alu 1 281 -31 370 125 0 0 chr11 67969871 67969927 -80813545 + MSTC LTR MaLR 373 428 0 870 179 132 73 chr11 67970166 67970278 -80813194 + AluJo SINE Alu 24 128 -184 2423 94 0 0 chr11 67970278 67970577 -80812895 + AluSc SINE Alu 1 299 -10 870 179 132 73 chr11 67970577 67970737 -80812735 + AluJo SINE Alu 128 312 0 386 187 33 11 chr11 67971088 67971179 -80812293 + L2 LINE L2 1950 2042 -1272 2535 51 0 0 chr11 67971184 67971478 -80811994 - AluY SINE Alu -17 294 1 1843 148 7 7 chr11 67971524 67971860 -80811612 + AluJb SINE Alu 1 336 0 2245 95 0 10 chr11 67971945 67972239 -80811233 + AluSq SINE Alu 1 291 -22 639 52 0 0 chr11 67972533 67972610 -80810862 + AluS SINE Alu 2 78 -235 396 0 0 0 chr11 67972752 67972796 -80810676 + (TG)n Simple_repeat Simple_repeat 2 45 0 289 305 143 29 chr11 67973043 67973254 -80810218 - L1MC/D LINE L1 -2151 5657 5399 1456 226 65 40 chr11 67973254 67973684 -80809788 - LTR47B LTR ERVL -2 441 1 289 305 143 29 chr11 67973684 67973780 -80809692 - L1MC/D LINE L1 -2409 5399 5315 2258 120 13 0 chr11 67973935 67974292 -80809180 + AluSx SINE Alu 1 361 0 2072 141 0 10 chr11 67974367 67974672 -80808800 + AluJb SINE Alu 3 304 -8 1466 169 3 49 chr11 67974787 67975071 -80808401 - AluJo SINE Alu -14 298 28 2032 128 11 4 chr11 67975073 67975378 -80808094 + AluSx SINE Alu 1 307 0 756 82 10 0 chr11 67975390 67975487 -80807985 + AluY SINE Alu 2 99 -212 2267 103 3 0 chr11 67975587 67975878 -80807594 - AluSx SINE Alu -20 292 1 645 194 76 81 chr11 67975878 67976089 -80807383 - L1ME LINE L1 -478 5684 5475 416 158 37 12 chr11 67976105 67976187 -80807285 - FLAM_C SINE Alu -4 139 56 703 251 142 5 chr11 67976258 67976477 -80806995 - L1ME LINE L1 -1334 4812 4564 679 265 65 56 chr11 67976501 67976970 -80806502 - L1ME LINE L1 -680 5490 4996 2241 117 7 0 chr11 67976970 67977277 -80806195 - AluSx SINE Alu -3 309 1 2583 53 0 3 chr11 67977317 67977621 -80805851 - AluY SINE Alu -4 307 5 649 201 20 13 chr11 67977629 67977778 -80805694 - MLT1A1 LTR MaLR -215 150 1 2606 211 77 20 chr11 67977805 67977884 -80805588 - L1MC4a LINE L1 -8 7800 7727 7903 166 122 38 chr11 67977884 67979504 -80803968 + MER52A LTR ERV1 1 1755 0 2606 211 77 20 chr11 67979504 67980126 -80803346 - L1MC4a LINE L1 -81 7727 7059 1297 193 0 9 chr11 67980126 67980339 -80803133 - AluJo SINE Alu -15 297 87 633 195 5 54 chr11 67980340 67980456 -80803016 - L1MC4a LINE L1 -778 7030 6950 2016 153 0 3 chr11 67980456 67980751 -80802721 + AluJb SINE Alu 1 294 -18 633 195 5 54 chr11 67980751 67980853 -80802619 - L1MC4a LINE L1 -858 6950 6845 1761 158 13 92 chr11 67980866 67980907 -80802565 - L1MB7 LINE L1 -18 6166 6123 786 203 0 0 chr11 67980907 67981030 -80802442 + FLAM_A SINE Alu 1 123 -10 1761 158 13 92 chr11 67981030 67981155 -80802317 - L1MB7 LINE L1 -61 6123 5990 180 0 0 0 chr11 67981155 67981175 -80802297 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1761 158 13 92 chr11 67981175 67981474 -80801998 - L1MB7 LINE L1 -194 5990 5737 818 217 3 9 chr11 67981474 67981770 -80801702 + MLT1A1 LTR MaLR 1 365 0 2887 186 21 24 chr11 67981770 67981879 -80801593 - L1MB7 LINE L1 -443 5741 5633 1616 182 54 56 chr11 67981879 67982270 -80801202 - MLT1B LTR MaLR 0 390 1 2887 186 21 24 chr11 67982270 67983191 -80800281 - L1MB7 LINE L1 -551 5633 4715 5813 163 30 46 chr11 67983194 67983341 -80800131 - L1MC1 LINE L1 0 6333 6185 1788 210 134 11 chr11 67983341 67983780 -80799692 - LTR42 LTR ERVL -2 493 1 5813 163 30 46 chr11 67983780 67984688 -80798784 - L1MC1 LINE L1 -148 6185 5334 2111 131 7 10 chr11 67984688 67984994 -80798478 - AluSx SINE Alu -1 311 7 5813 163 30 46 chr11 67984994 67985942 -80797530 - L1MC1 LINE L1 -999 5334 4372 1878 155 21 0 chr11 67985953 67986237 -80797235 - AluJo SINE Alu -22 290 1 6623 115 6 8 chr11 67986258 67987303 -80796169 - L1MA2 LINE L1 0 6304 5262 2577 75 67 5 chr11 67987311 67987685 -80795787 + MLT2A1 LTR ERVL 1 397 -47 6325 210 60 21 chr11 67987710 67988451 -80795021 - L1MA2 LINE L1 -901 5245 4534 1796 188 0 23 chr11 67988451 67988760 -80794712 - AluJb SINE Alu -10 302 1 6325 210 60 21 chr11 67988760 67989713 -80793759 - L1MA2 LINE L1 -1612 4534 3486 474 151 92 56 chr11 67989713 67989839 -80793633 + MLT1A1 LTR MaLR 1 149 -225 2419 77 0 3 chr11 67989839 67990137 -80793335 - AluSx SINE Alu -15 297 1 257 92 31 92 chr11 67992151 67992216 -80791256 - AluSq SINE Alu 0 302 242 1802 164 0 53 chr11 67992405 67992723 -80790749 - AluSx SINE Alu -6 306 6 248 173 19 0 chr11 67992745 67992797 -80790675 + AluSg/x SINE Alu 118 170 -132 2124 87 0 0 chr11 67992799 67993064 -80790408 - AluSq SINE Alu -48 265 1 2573 61 0 10 chr11 67993076 67993387 -80790085 - AluY SINE Alu -3 308 1 1494 181 69 79 chr11 67993395 67993827 -80789645 - Charlie6 DNA MER1_type -1793 1707 1280 2501 68 3 3 chr11 67993836 67994147 -80789325 + AluY SINE Alu 1 311 0 1403 154 5 0 chr11 67994314 67994535 -80788937 + MLT1A1 LTR MaLR 144 365 0 351 307 18 0 chr11 67994538 67994652 -80788820 - ERVL LTR ERVL -925 4839 4724 269 189 0 0 chr11 67994660 67994713 -80788759 + MER74B LTR ERVL 1 53 -569 694 242 6 0 chr11 67994748 67994909 -80788563 + MER74B LTR ERVL 211 372 -250 1119 209 59 126 chr11 67994975 67995283 -80788189 + MER66A LTR ERV1 97 424 -54 2186 129 10 0 chr11 67995283 67995585 -80787887 - AluSg SINE Alu -4 306 2 2062 121 4 0 chr11 67995588 67995893 -80787579 - AluSx SINE Alu 0 306 1 1119 209 59 126 chr11 67995893 67996079 -80787393 + MER66A LTR ERV1 426 478 0 10240 179 118 114 chr11 67996244 67996882 -80786590 + MER66A-int LTR ERV1 2 635 -6041 2047 148 3 19 chr11 67996882 67997199 -80786273 - AluJb SINE Alu 0 312 1 10240 179 118 114 chr11 67997199 67997741 -80785731 + MER66A-int LTR ERV1 635 1173 -5503 2404 105 0 3 chr11 67997741 67998054 -80785418 + AluSq SINE Alu 1 312 -1 10240 179 118 114 chr11 67998054 67999154 -80784318 + MER66A-int LTR ERV1 1173 2266 -4410 1232 177 5 14 chr11 67999154 67999369 -80784103 + AluJb SINE Alu 85 297 -15 10240 179 118 114 chr11 67999369 68001167 -80782305 + MER66A-int LTR ERV1 2266 4452 -2224 373 236 36 45 chr11 68001167 68001277 -80782195 + MER4D LTR ERV1 52 160 -712 1306 154 9 37 chr11 68001309 68001591 -80781881 + MER66-int LTR ERV1 4607 6171 -1585 2788 10 0 0 chr11 68001605 68001901 -80781571 + AluY SINE Alu 1 296 -15 2186 123 3 3 chr11 68001905 68002206 -80781266 + AluSq SINE Alu 3 303 -10 1051 199 79 87 chr11 68002207 68002438 -80781034 + L1ME3 LINE L1 5696 5927 -235 2187 120 3 0 chr11 68002438 68002730 -80780742 + AluSx SINE Alu 1 293 -19 2342 81 17 0 chr11 68002737 68003033 -80780439 + AluSp SINE Alu 1 301 -12 1051 199 79 87 chr11 68003033 68003149 -80780323 + L1ME3 LINE L1 5933 6048 -114 2363 79 3 0 chr11 68003151 68003443 -80780029 + AluSp SINE Alu 2 294 -19 1601 140 17 63 chr11 68003449 68003749 -80779723 - AluJb SINE Alu -4 308 23 957 202 0 16 chr11 68003759 68003942 -80779530 + AluJb SINE Alu 120 299 -13 486 169 8 51 chr11 68003950 68004068 -80779404 + L1ME3 LINE L1 6050 6162 0 2165 125 7 0 chr11 68004077 68004372 -80779100 + AluSx SINE Alu 1 297 -15 1857 120 15 0 chr11 68004768 68005027 -80778445 + AluJo SINE Alu 29 291 -21 896 91 14 21 chr11 68005130 68005273 -80778199 - LTR3 LTR ERVK -289 143 2 1369 128 0 5 chr11 68005273 68005460 -80778012 + AluSg/x SINE Alu 105 290 -20 1648 146 14 21 chr11 68005510 68005798 -80777674 + AluJb SINE Alu 8 293 -19 1434 141 23 100 chr11 68005858 68006157 -80777315 - AluJo SINE Alu -16 296 21 496 206 137 0 chr11 68006926 68007057 -80776415 - MIR SINE MIR -46 216 68 247 341 79 8 chr11 68007095 68007221 -80776251 - MIR SINE MIR -20 242 108 213 289 234 8 chr11 68007739 68007867 -80775605 - MIR SINE MIR -46 216 60 583 253 154 46 chr11 68009569 68009875 -80773597 - L1ME LINE L1 -511 5659 5323 2242 114 13 7 chr11 68009875 68010181 -80773291 - AluSx SINE Alu -4 308 1 348 239 124 26 chr11 68010267 68010380 -80773092 - MIR SINE MIR -56 152 29 * 375 310 164 6 chr11 68010363 68010534 -80772938 + MIR SINE MIR 52 249 -13 445 183 167 58 chr11 68010543 68010663 -80772809 + FLAM_C SINE Alu 1 133 0 216 160 60 20 chr11 68012690 68012740 -80770732 + L2 LINE L2 3262 3313 0 1068 300 171 30 chr11 68012797 68013714 -80769758 - L2 LINE L2 -456 2858 1813 2201 117 0 3 chr11 68013743 68014052 -80769420 - AluSg SINE Alu -2 308 1 233 299 158 0 chr11 68014499 68014626 -80768846 - MIR3 SINE MIR -21 187 41 339 306 82 14 chr11 68017001 68017148 -80766324 + MIR SINE MIR 28 184 -78 685 239 171 0 chr11 68017255 68017460 -80766012 + MIR SINE MIR 13 252 -10 2195 112 0 13 chr11 68018208 68018522 -80764950 - AluSg SINE Alu 0 310 1 412 330 81 53 chr11 68018609 68019079 -80764393 - L2 LINE L2 -17 3296 2814 313 320 10 19 chr11 68019124 68019227 -80764245 - MIR SINE MIR -28 234 133 518 224 40 23 chr11 68019425 68019599 -80763873 - MER58A DNA MER1_type -23 201 25 221 186 23 0 chr11 68019680 68019723 -80763749 + MER5B DNA MER1_type 3 46 -132 1619 141 133 0 chr11 68019724 68019987 -80763485 - AluJo SINE Alu -2 300 3 2088 115 3 3 chr11 68020001 68020296 -80763176 - AluSg SINE Alu -15 295 1 235 314 162 0 chr11 68020346 68020537 -80762935 - L1MC4 LINE L1 -28 8014 7793 203 339 85 25 chr11 68020738 68020974 -80762498 - L2 LINE L2 -1733 1581 1332 451 277 127 9 chr11 68021284 68021504 -80761968 - L2 LINE L2 -2224 1090 845 481 198 0 0 chr11 68021507 68021593 -80761879 - AluSg/x SINE Alu -18 291 206 262 192 164 0 chr11 68021593 68021666 -80761806 - MLT1B LTR MaLR -294 96 12 277 234 37 19 chr11 68021680 68021787 -80761685 + L1ME3A LINE L1 4541 4649 -1497 329 325 141 31 chr11 68021885 68022076 -80761396 + L1ME3A LINE L1 4882 5093 -1053 1023 189 0 122 chr11 68022090 68022386 -80761086 + AluJo SINE Alu 46 305 -7 2301 54 3 17 chr11 68022467 68022765 -80760707 + AluY SINE Alu 1 294 -17 399 301 90 56 chr11 68022787 68023137 -80760335 + L1ME3A LINE L1 5164 5527 -639 302 404 50 15 chr11 68023286 68023484 -80759988 + L1ME3A LINE L1 5743 5947 -223 785 211 10 72 chr11 68023662 68023871 -80759601 + AluSc SINE Alu 3 198 -111 198 0 0 0 chr11 68023982 68024004 -80759468 + (A)n Simple_repeat Simple_repeat 1 22 0 1753 164 14 0 chr11 68024010 68024297 -80759175 + AluSx SINE Alu 1 291 -21 2299 79 0 22 chr11 68024365 68024682 -80758790 + AluY SINE Alu 1 310 -1 1590 165 13 16 chr11 68024714 68025017 -80758455 - AluJb SINE Alu -10 302 1 1198 193 40 8 chr11 68025029 68025278 -80758194 - AluJo SINE Alu -9 303 47 278 328 16 41 chr11 68025453 68025575 -80757897 - L2 LINE L2 -1810 1504 1386 183 312 19 57 chr11 68025686 68025843 -80757629 - L2 LINE L2 -443 2871 2721 239 303 71 20 chr11 68026965 68027064 -80756408 + MIR SINE MIR 47 150 -112 248 51 0 26 chr11 68027924 68027963 -80755509 + (CCCCAG)n Simple_repeat Simple_repeat 3 40 0 195 114 0 0 chr11 68028551 68028586 -80754886 + (GGGTG)n Simple_repeat Simple_repeat 5 39 0 1841 166 7 0 chr11 68029448 68029744 -80753728 + AluJb SINE Alu 1 298 -14 1561 160 44 38 chr11 68030104 68030252 -80753220 + AluSx SINE Alu 1 146 -166 2516 53 0 0 chr11 68030252 68030552 -80752920 + AluY SINE Alu 1 300 -11 1561 160 44 38 chr11 68030552 68030696 -80752776 + AluSx SINE Alu 146 295 -17 270 353 35 6 chr11 68032520 68032693 -80750779 - L1MC4 LINE L1 -133 7909 7732 1548 169 34 4 chr11 68034003 68034269 -80749203 - AluJo SINE Alu -16 296 23 22 0 0 0 chr11 68034428 68034450 -80749022 + AT_rich Low_complexity Low_complexity 1 22 0 1711 144 57 13 chr11 68034510 68034809 -80748663 + AluJo SINE Alu 1 312 0 248 178 14 41 chr11 68034810 68034883 -80748589 + L1MC5 LINE L1 7843 7913 -48 608 191 299 0 chr11 68034931 68035053 -80748419 + L1ME3A LINE L1 5651 5735 -435 1366 155 42 68 chr11 68035053 68035362 -80748110 + AluJo SINE Alu 1 301 -11 608 191 299 0 chr11 68035362 68035490 -80747982 + L1ME3A LINE L1 5735 5976 -194 1648 185 7 7 chr11 68035492 68035784 -80747688 + AluJb SINE Alu 1 292 -20 2485 59 0 0 chr11 68035828 68036134 -80747338 + AluY SINE Alu 1 306 -5 2051 120 7 3 chr11 68036411 68036703 -80746769 + AluSx SINE Alu 6 298 -14 1828 83 0 4 chr11 68037456 68037697 -80745775 + AluSq SINE Alu 1 240 -73 2234 91 3 0 chr11 68038160 68038458 -80745014 + AluSp SINE Alu 1 299 -14 2138 85 13 23 chr11 68039082 68039387 -80744085 - AluSx SINE Alu -10 302 1 2138 107 0 16 chr11 68039730 68040047 -80743425 + AluSx SINE Alu 1 312 0 24 0 0 0 chr11 68040047 68040071 -80743401 + AT_rich Low_complexity Low_complexity 1 24 0 723 211 0 23 chr11 68040283 68040416 -80743056 - FLAM_A SINE Alu -3 130 1 2213 109 3 0 chr11 68040433 68040763 -80742709 + AluSx SINE Alu 1 312 0 629 325 99 27 chr11 68040811 68041109 -80742363 + L1M4 LINE L1 3081 3356 -2790 2190 95 0 0 chr11 68041109 68041415 -80742057 + AluSx SINE Alu 1 306 0 629 325 99 27 chr11 68041415 68041883 -80741589 + L1M4 LINE L1 3356 3903 -2243 520 305 98 48 chr11 68042348 68042643 -80740829 + L1M4 LINE L1 2865 3174 -2972 521 322 92 42 chr11 68042889 68043224 -80740248 - L1M4 LINE L1 -2972 3174 2823 629 325 99 27 chr11 68043649 68044117 -80739355 - L1M4 LINE L1 -2243 3903 3356 2189 95 0 0 chr11 68044117 68044423 -80739049 - AluSx SINE Alu 0 306 1 629 325 99 27 chr11 68044423 68044721 -80738751 - L1M4 LINE L1 -2790 3356 3081 2213 109 3 0 chr11 68044769 68045099 -80738373 - AluSx SINE Alu 0 312 1 723 211 0 23 chr11 68045116 68045249 -80738223 + FLAM_A SINE Alu 1 130 -3 24 0 0 0 chr11 68045461 68045485 -80737987 + AT_rich Low_complexity Low_complexity 1 24 0 2119 110 0 16 chr11 68045485 68045802 -80737670 - AluSx SINE Alu 0 312 1 2001 87 22 4 chr11 68046154 68046429 -80737043 + AluSx SINE Alu 1 280 -32 189 0 0 0 chr11 68046429 68046450 -80737022 + (TAAAA)n Simple_repeat Simple_repeat 1 21 0 287 262 60 0 chr11 68046450 68046534 -80736938 + MIR SINE MIR 142 230 -32 197 344 100 0 chr11 68046795 68046885 -80736587 + MIR SINE MIR 132 230 -32 1166 98 0 0 chr11 68047267 68047420 -80736052 - AluSq SINE Alu -94 219 67 222 245 102 31 chr11 68047558 68047656 -80735816 + MIR SINE MIR 46 150 -112 698 131 0 0 chr11 68047659 68047758 -80735714 + AluS SINE Alu 1 99 -213 2005 151 0 6 chr11 68048051 68048362 -80735110 - AluSx SINE Alu -3 309 1 2261 103 0 6 chr11 68048364 68048676 -80734796 - AluSx SINE Alu -2 310 1 187 312 26 0 chr11 68048882 68048959 -80734513 + L2 LINE L2 3121 3199 -73 292 328 0 0 chr11 68049558 68049692 -80733780 + (TGG)n Simple_repeat Simple_repeat 3 136 0 353 295 29 0 chr11 68050692 68050797 -80732675 - MIR3 SINE MIR -39 169 62 547 208 123 0 chr11 68050924 68051054 -80732418 + MIR SINE MIR 60 205 -57 210 37 0 0 chr11 68051080 68051107 -80732365 + (TTG)n Simple_repeat Simple_repeat 2 28 0 2261 97 0 0 chr11 68051109 68051407 -80732065 - AluY SINE Alu -13 298 1 809 195 32 37 chr11 68051411 68051601 -80731871 - AluSq SINE Alu -4 309 121 198 0 0 0 chr11 68052885 68052907 -80730565 + (T)n Simple_repeat Simple_repeat 1 22 0 609 103 0 0 chr11 68054287 68054365 -80729107 + AluS SINE Alu 16 93 -219 2410 43 0 13 chr11 68054366 68054669 -80728803 + AluY SINE Alu 1 299 -12 187 191 32 0 chr11 68054831 68054894 -80728578 + (TA)n Simple_repeat Simple_repeat 1 65 0 237 307 30 50 chr11 68054919 68055020 -80728452 - L2 LINE L2 -1546 1768 1670 1022 118 0 0 chr11 68055166 68055301 -80728171 + AluSq/x SINE Alu 1 135 -177 2072 127 0 3 chr11 68055301 68055608 -80727864 + AluSx SINE Alu 1 306 -6 190 111 0 44 chr11 68058513 68058558 -80724914 + (TG)n Simple_repeat Simple_repeat 1 43 0 183 146 0 49 chr11 68059961 68060002 -80723470 - MIR SINE MIR -88 120 82 370 357 117 9 chr11 68060635 68060848 -80722624 - MIR SINE MIR -21 241 6 2026 102 0 17 chr11 68062076 68062370 -80721102 - AluSq SINE Alu -24 289 1 21 57 0 0 chr11 68062376 68062411 -80721061 + AT_rich Low_complexity Low_complexity 1 35 0 1556 198 0 19 chr11 68062515 68062652 -80720820 + AluJo SINE Alu 1 139 -173 2158 114 0 0 chr11 68062652 68062949 -80720523 + AluSx SINE Alu 1 297 -15 884 211 0 6 chr11 68062953 68063119 -80720353 + AluJb SINE Alu 138 302 -10 359 231 173 29 chr11 68063198 68063371 -80720101 + MIR3 SINE MIR 8 205 -3 2170 97 3 13 chr11 68063375 68063675 -80719797 - AluSq SINE Alu -16 297 1 1683 104 37 24 chr11 68063832 68064129 -80719343 - AluY SINE Alu -2 309 9 180 0 0 0 chr11 68064129 68064149 -80719323 + (CCTG)n Simple_repeat Simple_repeat 2 21 0 249 108 0 0 chr11 68064149 68064186 -80719286 + (TTCC)n Simple_repeat Simple_repeat 2 38 0 2289 112 0 3 chr11 68064191 68064505 -80718967 - AluSp SINE Alu 0 313 1 398 313 90 30 chr11 68065527 68065728 -80717744 + MIR SINE MIR 31 243 -19 284 353 53 37 chr11 68065858 68066045 -80717427 + L2 LINE L2 3082 3271 -1 738 296 71 5 chr11 68066077 68066319 -80717153 + MIR SINE MIR 7 262 0 2266 92 7 0 chr11 68066383 68066689 -80716783 - AluSx SINE Alu -4 308 1 2062 107 0 17 chr11 68066713 68067053 -80716419 - AluY SINE Alu 0 311 1 180 200 0 0 chr11 68068221 68068256 -80715216 - L2 LINE L2 -9 3263 3229 257 188 116 0 chr11 68068324 68068393 -80715079 - L2 LINE L2 -1 3312 3236 466 198 0 0 chr11 68068586 68068672 -80714800 + L2 LINE L2 3228 3313 0 396 286 0 0 chr11 68068854 68068959 -80714513 - Charlie8 DNA MER1_type -2228 189 85 818 150 100 56 chr11 68068963 68069123 -80714349 - FRAM SINE Alu -13 163 1 405 307 78 0 chr11 68069527 68069719 -80713753 - L2 LINE L2 -293 3020 2814 493 300 138 16 chr11 68069724 68070184 -80713288 + L2 LINE L2 2693 3213 -100 2240 71 10 7 chr11 68070200 68070509 -80712963 - AluY SINE Alu -1 310 1 1184 129 73 13 chr11 68070573 68070805 -80712667 - L1MB7 LINE L1 -1 6183 5938 231 111 0 0 chr11 68070869 68070905 -80712567 - MIR SINE MIR -114 148 113 195 260 82 0 chr11 68071284 68071357 -80712115 + MIR SINE MIR 58 136 -72 323 246 50 19 chr11 68071765 68071890 -80711582 - MIR SINE MIR -61 147 55 1705 139 0 89 chr11 68072049 68072386 -80711086 - AluSx SINE Alu -5 307 1 2354 92 0 0 chr11 68072417 68072720 -80710752 + AluSx SINE Alu 1 303 -9 277 279 47 12 chr11 68072720 68072806 -80710666 - MLT1K LTR MaLR -409 179 91 349 290 53 23 chr11 68072807 68072938 -80710534 - MLT1K LTR MaLR -441 147 13 1647 90 4 37 chr11 68073755 68074000 -80709472 - AluSg/x SINE Alu 0 310 74 283 248 16 24 chr11 68076380 68076505 -80706967 + (TG)n Simple_repeat Simple_repeat 1 124 0 1617 109 0 9 chr11 68076548 68076778 -80706694 - AluSg/x SINE Alu 0 312 85 2543 36 0 0 chr11 68076778 68077081 -80706391 - AluY SINE Alu -4 307 5 1618 147 59 7 chr11 68077088 68077361 -80706111 - AluJb SINE Alu -15 297 11 2221 79 7 10 chr11 68077605 68077908 -80705564 - AluY SINE Alu -9 302 1 190 254 104 0 chr11 68077917 68077984 -80705488 - MIR SINE MIR -109 153 80 885 155 0 0 chr11 68078508 68078650 -80704822 - FLAM_C SINE Alu -1 142 1 552 275 28 33 chr11 68078656 68078838 -80704634 + MIR SINE MIR 12 192 -70 372 342 50 40 chr11 68078939 68079240 -80704232 + L2 LINE L2 2884 3187 -85 373 341 105 47 chr11 68079541 68079837 -80703635 - L1 LINE L1 -2969 3177 2865 629 325 99 27 chr11 68080302 68080770 -80702702 - L1M4 LINE L1 -2243 3903 3356 2189 95 0 0 chr11 68080770 68081076 -80702396 - AluSx SINE Alu 0 306 1 629 325 99 27 chr11 68081076 68081374 -80702098 - L1M4 LINE L1 -2790 3356 3081 2213 109 3 0 chr11 68081422 68081752 -80701720 - AluSx SINE Alu 0 312 1 723 211 0 23 chr11 68081769 68081902 -80701570 + FLAM_A SINE Alu 1 130 -3 24 0 0 0 chr11 68082114 68082138 -80701334 + AT_rich Low_complexity Low_complexity 1 24 0 2138 107 0 16 chr11 68082138 68082455 -80701017 - AluSx SINE Alu 0 312 1 1979 108 10 26 chr11 68082798 68083105 -80700367 + AluSx SINE Alu 1 302 -10 2234 91 3 0 chr11 68083735 68084033 -80699439 - AluSp SINE Alu -14 299 1 1828 83 0 4 chr11 68084496 68084737 -80698735 - AluSq SINE Alu -73 240 1 302 351 0 9 chr11 68085360 68085471 -80698001 - L1 LINE L1 -2481 3665 3556 2051 120 7 3 chr11 68085491 68085783 -80697689 - AluSx SINE Alu -14 298 6 2342 84 0 3 chr11 68086059 68086368 -80697104 - AluSx SINE Alu -4 308 1 1534 186 24 10 chr11 68086371 68086661 -80696811 - AluJo SINE Alu -18 294 1 308 350 161 16 chr11 68086692 68086935 -80696537 - L2 LINE L2 -2 3270 2993 1991 118 51 3 chr11 68086944 68087240 -80696232 + AluSx SINE Alu 1 310 -2 240 322 35 0 chr11 68087567 68087654 -80695818 - MIR3 SINE MIR -37 171 82 298 259 6 108 chr11 68087854 68087900 -80695572 - MIR3 SINE MIR -27 181 132 2139 112 3 0 chr11 68087900 68088195 -80695277 - AluSq SINE Alu -17 296 1 298 259 6 108 chr11 68088195 68088306 -80695166 - MIR3 SINE MIR -76 132 40 1543 150 90 11 chr11 68089368 68089634 -80693838 - AluJb SINE Alu -25 287 1 624 354 10 0 chr11 68091655 68091861 -80691611 - MIR SINE MIR -21 241 34 219 255 24 3 chr11 68092841 68092923 -80690549 - MIR SINE MIR -71 137 71 241 280 108 0 chr11 68093322 68093415 -80690057 + MIR SINE MIR 49 151 -57 274 286 14 0 chr11 68093458 68093528 -80689944 - MIR SINE MIR -2 260 190 190 226 38 19 chr11 68093537 68093590 -80689882 - MIR SINE MIR -179 83 30 1163 102 24 0 chr11 68093598 68093765 -80689707 + AluSp SINE Alu 136 306 -7 259 330 67 81 chr11 68094506 68094739 -80688733 - L2 LINE L2 -434 2880 2652 2182 107 3 0 chr11 68094739 68095039 -80688433 + AluSx SINE Alu 1 301 -11 259 330 67 81 chr11 68095039 68095151 -80688321 - L2 LINE L2 -662 2652 2540 233 261 59 78 chr11 68095333 68095486 -80687986 + MIR3 SINE MIR 18 167 -41 189 286 63 0 chr11 68095991 68096054 -80687418 + MIR SINE MIR 40 106 -102 190 111 0 44 chr11 68101443 68101488 -80681984 + (TG)n Simple_repeat Simple_repeat 1 43 0 183 146 0 49 chr11 68102891 68102932 -80680540 - MIR SINE MIR -88 120 82 370 357 117 9 chr11 68103565 68103778 -80679694 - MIR SINE MIR -21 241 6 2113 92 0 17 chr11 68105007 68105301 -80678171 - AluSq SINE Alu -24 289 1 22 56 0 0 chr11 68105306 68105342 -80678130 + AT_rich Low_complexity Low_complexity 1 36 0 1616 195 0 16 chr11 68105449 68105586 -80677886 + AluJo SINE Alu 1 139 -173 2158 114 0 0 chr11 68105586 68105883 -80677589 + AluSx SINE Alu 1 297 -15 1616 195 0 16 chr11 68105883 68106052 -80677420 + AluJo SINE Alu 139 302 -10 359 231 173 29 chr11 68106131 68106304 -80677168 + MIR3 SINE MIR 8 205 -3 2207 90 3 13 chr11 68106308 68106608 -80676864 - AluSq SINE Alu -16 297 1 2056 107 0 20 chr11 68107562 68107903 -80675569 + AluY SINE Alu 1 311 0 2266 92 7 0 chr11 68107927 68108233 -80675239 + AluSx SINE Alu 1 308 -4 738 296 71 5 chr11 68108297 68108539 -80674933 - MIR SINE MIR 0 262 7 284 353 53 37 chr11 68108571 68108758 -80674714 - L2 LINE L2 -1 3271 3082 398 313 90 30 chr11 68108888 68109089 -80674383 - MIR SINE MIR -19 243 31 2289 112 0 3 chr11 68110110 68110424 -80673048 + AluSp SINE Alu 1 313 0 249 108 0 0 chr11 68110429 68110466 -80673006 + (GGAA)n Simple_repeat Simple_repeat 2 38 0 180 0 0 0 chr11 68110466 68110486 -80672986 + (CAGG)n Simple_repeat Simple_repeat 2 21 0 1824 108 48 30 chr11 68110486 68110781 -80672691 + AluSx SINE Alu 9 308 -4 348 297 72 0 chr11 68110789 68110900 -80672572 + L1ME4a LINE L1 5313 5431 -2377 952 119 0 8 chr11 68110931 68111065 -80672407 + FLAM_C SINE Alu 1 133 0 2241 116 0 0 chr11 68111075 68111376 -80672096 + AluSg SINE Alu 1 301 -9 1985 133 0 20 chr11 68111462 68111763 -80671709 + AluSx SINE Alu 1 295 -17 282 281 173 4 chr11 68111764 68112042 -80671430 + L1ME4a LINE L1 5790 6114 -7 2372 72 0 7 chr11 68112144 68112450 -80671022 + AluSx SINE Alu 1 304 -8 1549 184 36 4 chr11 68112946 68113223 -80670249 + AluJo SINE Alu 1 286 -26 2284 90 6 10 chr11 68113223 68113534 -80669938 - AluSg SINE Alu 0 310 1 35 24 0 0 chr11 68113534 68113576 -80669896 + AT_rich Low_complexity Low_complexity 1 42 0 448 232 0 32 chr11 68115898 68116083 -80667389 + (CA)n Simple_repeat Simple_repeat 1 179 0 213 196 0 0 chr11 68116150 68116206 -80667266 + (CA)n Simple_repeat Simple_repeat 1 56 0 2487 96 0 0 chr11 68117025 68117337 -80666135 + AluSx SINE Alu 1 312 0 2275 121 0 3 chr11 68118163 68118470 -80665002 + AluSx SINE Alu 1 306 -6 2507 75 7 3 chr11 68119038 68119346 -80664126 - AluSq SINE Alu -4 309 1 2074 100 53 20 chr11 68121351 68121651 -80661821 - AluSg SINE Alu 0 310 1 2211 101 0 7 chr11 68121741 68122056 -80661416 + AluSc SINE Alu 1 313 0 1962 136 19 16 chr11 68122818 68123126 -80660346 + AluJo SINE Alu 1 309 -3 206 180 0 60 chr11 68124009 68124059 -80659413 + MIR SINE MIR 117 163 -99 470 312 13 26 chr11 68124338 68124492 -80658980 + L2 LINE L2 3121 3272 0 2597 36 0 10 chr11 68124602 68124951 -80658521 + AluY SINE Alu 2 347 0 1953 147 13 7 chr11 68124969 68125268 -80658204 + AluSx SINE Alu 1 301 -11 1824 191 0 0 chr11 68125268 68125590 -80657882 + AluJb SINE Alu 1 322 0 696 190 0 29 chr11 68125597 68125734 -80657738 + FLAM_A SINE Alu 1 133 0 686 164 0 0 chr11 68125741 68125875 -80657597 + L1MB5 LINE L1 6041 6174 0 921 257 122 19 chr11 68126080 68126457 -80657015 + L2 LINE L2 2898 3313 0 190 279 0 0 chr11 68126656 68126699 -80656773 + L2 LINE L2 3238 3280 -33 2434 100 0 0 chr11 68127221 68127532 -80655940 + AluSx SINE Alu 1 311 -1 1671 127 0 0 chr11 68127822 68128042 -80655430 - AluSq SINE Alu -16 297 78 261 83 0 0 chr11 68128067 68128103 -80655369 + (TTCC)n Simple_repeat Simple_repeat 1 36 0 1780 175 17 0 chr11 68128103 68128400 -80655072 - AluJb SINE Alu -8 304 3 216 0 0 0 chr11 68128487 68128511 -80654961 + (CA)n Simple_repeat Simple_repeat 1 24 0 713 250 78 9 chr11 68128968 68129232 -80654240 - Charlie8 DNA MER1_type -2229 188 2 277 273 188 23 chr11 68129399 68129527 -80653945 + MIR SINE MIR 71 219 -43 1804 164 3 10 chr11 68129704 68129715 -80653757 - AluJb SINE Alu -16 296 286 354 61 0 0 chr11 68129715 68129764 -80653708 + (TG)n Simple_repeat Simple_repeat 2 50 0 1804 164 3 10 chr11 68129764 68130050 -80653422 - AluJb SINE Alu -26 286 1 2231 129 0 7 chr11 68130293 68130595 -80652877 + AluSx SINE Alu 1 300 -12 2101 136 0 0 chr11 68130724 68131046 -80652426 - AluSx SINE Alu 0 312 1 26 0 0 0 chr11 68131106 68131132 -80652340 + AT_rich Low_complexity Low_complexity 1 26 0 2533 67 0 3 chr11 68131143 68131443 -80652029 + AluY SINE Alu 1 299 -12 411 71 0 18 chr11 68131451 68131507 -80651965 + FLAM SINE Alu 63 117 -26 332 269 0 0 chr11 68131514 68131581 -80651891 + L1MC4 LINE L1 6636 6702 -1340 320 289 11 22 chr11 68131592 68131682 -80651790 + L1MC4 LINE L1 6614 6702 -1340 441 103 0 0 chr11 68131684 68131752 -80651720 + (TA)n Simple_repeat Simple_repeat 1 68 0 2313 108 0 0 chr11 68132207 68132503 -80650969 - AluSx SINE Alu -12 300 5 304 247 36 127 chr11 68132735 68132901 -80650571 + MIR SINE MIR 111 261 -1 325 273 180 0 chr11 68133151 68133290 -80650182 + HAL1 LINE L1 1501 1664 -843 318 304 70 45 chr11 68133383 68133584 -80649888 - L2 LINE L2 -1 3312 3107 2282 94 0 3 chr11 68133656 68133954 -80649518 + AluSg SINE Alu 1 297 -13 1167 236 151 19 chr11 68133954 68134370 -80649102 - MLT1D LTR MaLR -31 474 4 237 202 12 71 chr11 68134374 68134458 -80649014 - L2 LINE L2 -1553 1761 1683 1841 166 23 10 chr11 68134459 68134767 -80648705 + AluJo SINE Alu 1 312 0 1456 289 82 50 chr11 68134774 68135624 -80647848 + HAL1 LINE L1 168 990 -1517 2197 95 0 57 chr11 68135624 68135940 -80647532 + AluSx SINE Alu 1 298 -14 1456 289 82 50 chr11 68135940 68136009 -80647463 + HAL1 LINE L1 990 1055 -1452 1754 159 38 3 chr11 68136009 68136348 -80647124 + L1MA4 LINE L1 5939 6289 -11 1456 289 82 50 chr11 68136348 68136419 -80647053 + HAL1 LINE L1 1055 1190 -1317 1331 100 11 11 chr11 68136605 68136785 -80646687 + AluSg/x SINE Alu 132 311 -1 231 36 0 0 chr11 68136794 68136822 -80646650 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 266 283 0 44 chr11 68137821 68138001 -80645471 + (CACTT)n Simple_repeat Simple_repeat 3 174 0 230 305 0 42 chr11 68137926 68138093 -80645379 + (CACTC)n Simple_repeat Simple_repeat 3 162 0 * 302 248 0 55 chr11 68139018 68139127 -80644345 + C-rich Low_complexity Low_complexity 6 108 0 331 170 9 9 chr11 68139716 68139822 -80643650 + (TG)n Simple_repeat Simple_repeat 2 107 0 614 175 6 0 chr11 68139837 68140014 -80643458 + (TG)n Simple_repeat Simple_repeat 1 178 0 623 194 7 6 chr11 68140038 68140654 -80642818 + (TG)n Simple_repeat Simple_repeat 1 616 0 225 299 0 15 chr11 68141498 68141565 -80641907 + MIR SINE MIR 196 261 -1 2170 130 0 3 chr11 68141800 68142100 -80641372 + AluSx SINE Alu 1 299 -13 3778 63 10 8 chr11 68142100 68142623 -80640849 + L1PA8 LINE L1 5649 6172 0 556 234 47 43 chr11 68142624 68142902 -80640570 + L1ME LINE L1 2116 2394 -4002 988 198 0 12 chr11 68142904 68143076 -80640396 + FRAM SINE Alu 1 169 -7 2196 136 7 0 chr11 68143077 68143387 -80640085 + AluSx SINE Alu 1 312 0 2360 116 6 0 chr11 68143413 68143724 -80639748 + AluSq SINE Alu 1 313 0 336 48 0 0 chr11 68143724 68143766 -80639706 + (GGAA)n Simple_repeat Simple_repeat 1 42 0 1957 233 35 32 chr11 68143766 68143937 -80639535 + L1ME LINE L1 2449 2618 -3597 795 168 0 0 chr11 68143937 68144062 -80639410 - FLAM_C SINE Alu -6 127 3 1957 233 35 32 chr11 68144062 68144550 -80638922 + L1ME LINE L1 2618 3110 -3105 2109 107 3 17 chr11 68144582 68144757 -80638715 - AluSx SINE Alu 0 306 135 2745 14 0 0 chr11 68144757 68145050 -80638422 - AluYa5 SINE Alu 0 311 19 2109 107 3 17 chr11 68145050 68145184 -80638288 - AluSx SINE Alu -171 135 1 496 120 0 0 chr11 68145214 68145289 -80638183 + AluJ/FRAM SINE Alu 225 299 -13 1939 203 69 173 chr11 68145290 68145416 -80638056 + L1ME LINE L1 3818 3956 -2283 2397 57 14 0 chr11 68145416 68145726 -80637746 + AluSp SINE Alu 1 314 0 1939 203 69 173 chr11 68145726 68146070 -80637402 + L1ME LINE L1 3956 4334 -1905 1917 156 0 3 chr11 68146070 68146359 -80637113 + AluJo SINE Alu 11 298 -14 1939 203 69 173 chr11 68146359 68146472 -80637000 + L1ME LINE L1 4334 4457 -1782 2082 111 47 3 chr11 68146472 68146770 -80636702 - AluSq SINE Alu 0 313 3 1940 144 0 30 chr11 68146772 68147077 -80636395 - AluJb SINE Alu -16 296 1 1939 203 69 173 chr11 68147077 68147142 -80636330 + L1ME LINE L1 4458 4528 -1711 1204 112 0 0 chr11 68147142 68147303 -80636169 + AluSq SINE Alu 152 312 -1 1939 203 69 173 chr11 68147303 68147908 -80635564 + L1ME LINE L1 4528 5195 -1044 2145 112 0 14 chr11 68147908 68148204 -80635268 + AluSx SINE Alu 3 294 -18 2482 74 7 3 chr11 68148207 68148516 -80634956 + AluSq SINE Alu 1 310 -3 2254 62 11 0 chr11 68148516 68148786 -80634686 + AluY SINE Alu 33 307 -4 1939 203 69 173 chr11 68148786 68148826 -80634646 + L1ME LINE L1 5196 5239 -1000 2249 117 7 0 chr11 68148826 68149133 -80634339 + AluSx SINE Alu 1 309 -3 1939 203 69 173 chr11 68149133 68149602 -80633870 + L1ME LINE L1 5239 5559 -680 721 251 142 5 chr11 68149626 68149845 -80633627 + L1ME3 LINE L1 4564 4812 -1334 398 148 37 14 chr11 68149915 68149996 -80633476 + FLAM_A SINE Alu 55 131 -2 1560 183 71 140 chr11 68150013 68150224 -80633248 + L1ME3 LINE L1 5475 5699 -463 2335 101 3 0 chr11 68150224 68150521 -80632951 + AluSx SINE Alu 1 298 -14 1560 183 71 140 chr11 68150521 68150556 -80632916 + L1ME3 LINE L1 5699 5735 -427 742 153 7 36 chr11 68150556 68150693 -80632779 + FLAM_A SINE Alu 1 133 0 2386 85 3 0 chr11 68150698 68150993 -80632479 + AluY SINE Alu 1 296 -15 2191 123 3 3 chr11 68150997 68151298 -80632174 + AluSq SINE Alu 3 303 -10 1560 183 71 140 chr11 68151298 68151530 -80631942 + L1ME3 LINE L1 5742 5988 -174 2182 123 3 0 chr11 68151530 68151822 -80631650 + AluSx SINE Alu 1 293 -19 2351 81 17 0 chr11 68151829 68152125 -80631347 + AluSp SINE Alu 1 301 -12 1560 183 71 140 chr11 68152125 68152241 -80631231 + L1ME3 LINE L1 5994 6048 -114 2377 79 3 0 chr11 68152243 68152535 -80630937 + AluSp SINE Alu 2 294 -19 1604 136 17 65 chr11 68152546 68152840 -80630632 - AluJb SINE Alu -10 302 23 960 202 0 16 chr11 68152850 68153033 -80630439 + AluJb SINE Alu 120 299 -13 487 169 8 51 chr11 68153041 68153159 -80630313 + L1ME3 LINE L1 6050 6162 0 2170 125 7 0 chr11 68153168 68153463 -80630009 + AluSx SINE Alu 1 297 -15 1921 121 11 0 chr11 68153859 68154123 -80629349 + AluJo SINE Alu 29 295 -17 446 261 50 56 chr11 68154351 68154402 -80629070 + MIR SINE MIR 3 53 -209 2288 102 10 3 chr11 68154402 68154705 -80628767 + AluSx SINE Alu 2 306 -6 446 261 50 56 chr11 68154705 68154873 -80628599 + MIR SINE MIR 53 224 -38 213 268 14 14 chr11 68157796 68157867 -80625605 + L2 LINE L2 2986 3056 -216 211 294 0 0 chr11 68158572 68158623 -80624849 + (TG)n Simple_repeat Simple_repeat 1 51 0 248 337 115 0 chr11 68167040 68167156 -80616316 + MIR SINE MIR 35 161 -68 295 258 67 0 chr11 68167342 68167431 -80616041 - MIR3 SINE MIR -44 164 70 266 271 116 52 chr11 68171932 68172103 -80611369 - MIR3 SINE MIR -1 207 30 221 268 0 0 chr11 68174451 68174507 -80608965 + MIR3 SINE MIR 116 171 -37 324 348 9 9 chr11 68174665 68174777 -80608695 + MIR SINE MIR 3 114 -148 207 313 62 21 chr11 68174792 68174888 -80608584 - MIR SINE MIR -38 224 125 251 186 71 43 chr11 68175034 68175104 -80608368 - MIR3 SINE MIR -46 162 91 28 29 0 0 chr11 68178081 68178116 -80605356 + GC_rich Low_complexity Low_complexity 1 35 0 37 52 0 0 chr11 68178338 68178396 -80605076 + GC_rich Low_complexity Low_complexity 1 58 0 2106 111 10 0 chr11 68179506 68179804 -80603668 + AluSx SINE Alu 1 301 -11 2000 109 7 7 chr11 68179806 68180091 -80603381 + AluSg SINE Alu 1 285 -25 2550 163 85 53 chr11 68180105 68180454 -80603018 + L1MB7 LINE L1 5464 5800 -384 2528 55 0 0 chr11 68180454 68180762 -80602710 - AluY SINE Alu -3 308 1 2550 163 85 53 chr11 68180762 68180831 -80602641 + L1MB7 LINE L1 5800 5865 -319 2154 113 3 0 chr11 68180831 68181131 -80602341 - AluSp SINE Alu -12 301 1 2550 163 85 53 chr11 68181131 68181357 -80602115 + L1MB7 LINE L1 5865 6135 -49 1912 76 28 0 chr11 68181357 68181606 -80601866 + AluY SINE Alu 37 292 -19 2550 163 85 53 chr11 68181606 68181640 -80601832 + L1MB7 LINE L1 6135 6166 -18 2094 135 0 0 chr11 68181640 68181944 -80601528 + AluSx SINE Alu 1 304 -8 206 250 23 0 chr11 68181955 68181999 -80601473 - MIR SINE MIR -103 159 115 231 288 200 9 chr11 68182099 68182280 -80601192 - MIR SINE MIR -21 241 29 331 239 6 132 chr11 68182548 68182575 -80600897 - L2 LINE L2 0 3313 3284 2089 112 0 7 chr11 68182575 68182885 -80600587 + AluSx SINE Alu 1 308 0 331 239 6 132 chr11 68182885 68183015 -80600457 - L2 LINE L2 -29 3284 3175 2497 52 0 3 chr11 68183351 68183657 -80599815 + AluY SINE Alu 1 305 -6 2313 94 0 3 chr11 68184026 68184333 -80599139 - AluSq SINE Alu -7 306 1 1534 186 24 10 chr11 68184336 68184626 -80598846 - AluJo SINE Alu -18 294 1 308 350 161 16 chr11 68184657 68184900 -80598572 - L2 LINE L2 -2 3270 2993 1991 118 51 3 chr11 68184909 68185205 -80598267 + AluSx SINE Alu 1 310 -2 240 322 35 0 chr11 68185532 68185619 -80597853 - MIR3 SINE MIR -37 171 82 299 259 6 108 chr11 68185819 68185865 -80597607 - MIR3 SINE MIR -27 181 132 2175 105 3 0 chr11 68185865 68186160 -80597312 - AluSq SINE Alu -17 296 1 299 259 6 108 chr11 68186160 68186271 -80597201 - MIR3 SINE MIR -76 132 40 1543 150 90 11 chr11 68187334 68187600 -80595872 - AluJb SINE Alu -25 287 1 624 354 10 0 chr11 68189619 68189825 -80593647 - MIR SINE MIR -21 241 34 219 255 24 3 chr11 68190805 68190887 -80592585 - MIR SINE MIR -71 137 71 241 280 108 0 chr11 68191286 68191379 -80592093 + MIR SINE MIR 49 151 -57 274 286 14 0 chr11 68191422 68191492 -80591980 - MIR SINE MIR -2 260 190 190 226 38 19 chr11 68191501 68191554 -80591918 - MIR SINE MIR -179 83 30 1163 102 24 0 chr11 68191562 68191729 -80591743 + AluSp SINE Alu 136 306 -7 240 335 67 81 chr11 68192470 68192703 -80590769 - L2 LINE L2 -434 2880 2652 2182 107 3 0 chr11 68192703 68193003 -80590469 + AluSx SINE Alu 1 301 -11 240 335 67 81 chr11 68193003 68193115 -80590357 - L2 LINE L2 -662 2652 2540 233 261 59 78 chr11 68193297 68193450 -80590022 + MIR3 SINE MIR 18 167 -41 502 338 87 58 chr11 68194529 68194971 -80588501 + L2 LINE L2 2223 2710 -562 1682 54 0 0 chr11 68194971 68195174 -80588298 - AluSg/x SINE Alu -19 290 88 502 338 87 58 chr11 68195174 68195522 -80587950 + L2 LINE L2 2710 3046 -226 31 0 0 0 chr11 68196140 68196171 -80587301 + GC_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr11 68196278 68196300 -80587172 + GC_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr11 68196765 68196799 -80586673 + GC_rich Low_complexity Low_complexity 1 34 0 307 309 64 36 chr11 68197619 68197729 -80585743 - MIR SINE MIR -62 146 34 1847 138 0 24 chr11 68199057 68199348 -80584124 + AluSx SINE Alu 9 292 -20 313 328 97 17 chr11 68199849 68200087 -80583385 + L2 LINE L2 2916 3172 -100 230 0 33 0 chr11 68200189 68200219 -80583253 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 2055 108 7 0 chr11 68200219 68200497 -80582975 - AluSx SINE Alu -32 280 1 747 196 0 0 chr11 68200507 68200640 -80582832 - FLAM_C SINE Alu 0 133 1 2310 82 0 3 chr11 68200661 68200965 -80582507 - AluY SINE Alu -8 303 1 190 254 104 0 chr11 68200974 68201041 -80582431 - MIR SINE MIR -109 153 80 885 155 0 0 chr11 68201565 68201707 -80581765 - FLAM_C SINE Alu -1 142 1 557 265 33 33 chr11 68201713 68201894 -80581578 + MIR SINE MIR 12 192 -70 372 342 50 40 chr11 68201995 68202296 -80581176 + L2 LINE L2 2884 3187 -85 408 217 70 35 chr11 68202657 68202772 -80580700 + MIR3 SINE MIR 15 133 -75 293 264 74 54 chr11 68202770 68202869 -80580603 - MIR SINE MIR -1 261 157 * 2319 106 0 0 chr11 68202869 68203181 -80580291 - AluSx SINE Alu 0 312 1 293 264 74 54 chr11 68203181 68203229 -80580243 - MIR SINE MIR -105 157 111 203 327 129 0 chr11 68203272 68203373 -80580099 + MIR SINE MIR 132 245 -17 1426 135 99 67 chr11 68203429 68203576 -80579896 - AluJo SINE Alu -11 301 160 2247 105 0 9 chr11 68203576 68203891 -80579581 - AluSx SINE Alu 0 312 1 1426 135 99 67 chr11 68203891 68204025 -80579447 - AluJo SINE Alu -152 160 11 527 183 0 19 chr11 68204033 68204137 -80579335 + MIR SINE MIR 40 141 -121 1486 170 59 39 chr11 68204235 68204541 -80578931 + AluJb SINE Alu 1 312 0 200 213 21 0 chr11 68205261 68205308 -80578164 + (CGGA)n Simple_repeat Simple_repeat 3 50 0 207 286 12 12 chr11 68205510 68205594 -80577878 + G-rich Low_complexity Low_complexity 3 86 0 1219 159 18 18 chr11 68206468 68206688 -80576784 - AluJb SINE Alu -8 304 85 424 269 49 35 chr11 68206894 68207060 -80576412 - MIR SINE MIR -15 193 22 281 352 56 0 chr11 68207112 68207237 -80576235 - MIR3 SINE MIR -15 193 62 1169 169 152 16 chr11 68207237 68207480 -80575992 + AluJb SINE Alu 1 276 -36 324 240 226 34 chr11 68207629 68207775 -80575697 + MIR SINE MIR 39 212 -50 270 0 0 0 chr11 68207881 68207911 -80575561 + (TG)n Simple_repeat Simple_repeat 1 30 0 292 43 43 0 chr11 68207911 68207957 -80575515 + (GA)n Simple_repeat Simple_repeat 2 49 0 586 262 96 38 chr11 68207966 68208200 -80575272 + MIR SINE MIR 3 249 -13 2119 101 0 0 chr11 68208201 68208479 -80574993 + AluSg SINE Alu 1 278 -32 288 0 0 0 chr11 68208481 68208513 -80574959 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 1032 131 0 37 chr11 68209226 68209490 -80573982 - AluJb SINE Alu 0 310 1 1544 180 29 13 chr11 68209503 68209814 -80573658 - L1MB5 LINE L1 0 6174 5859 916 184 8 96 chr11 68209827 68210077 -80573395 - AluJb SINE Alu 0 312 85 352 143 0 0 chr11 68210077 68210133 -80573339 - AluY SINE Alu -52 249 194 334 183 0 14 chr11 68210133 68210204 -80573268 - L1MB5 LINE L1 -310 5868 5799 2349 71 0 0 chr11 68210209 68210506 -80572966 - AluY SINE Alu -13 298 2 758 194 32 124 chr11 68210507 68210542 -80572930 - L1MB5 LINE L1 -788 5358 5321 663 248 0 0 chr11 68210542 68210675 -80572797 - FLAM_C SINE Alu 0 133 1 1841 134 0 0 chr11 68210676 68210938 -80572534 - AluSx SINE Alu -49 263 2 758 194 32 124 chr11 68210938 68210955 -80572517 - L1MB5 LINE L1 -825 5321 5304 2271 94 3 0 chr11 68210955 68211253 -80572219 - AluSp SINE Alu -14 299 1 758 194 32 124 chr11 68211253 68211609 -80571863 - L1MB5 LINE L1 -842 5304 4985 * 1910 224 47 71 chr11 68211597 68211670 -80571802 - L1ME3 LINE L1 -6 6156 6083 2130 125 0 0 chr11 68211670 68211975 -80571497 - AluSx SINE Alu -7 305 1 1337 190 95 0 chr11 68211975 68212135 -80571337 - AluJo SINE Alu -12 300 157 189 0 0 0 chr11 68212135 68212156 -80571316 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 1337 190 95 0 chr11 68212156 68212269 -80571203 - AluJo SINE Alu -155 157 1 1910 224 47 71 chr11 68212269 68212860 -80570612 - L1ME3 LINE L1 -77 6085 5507 2052 134 7 0 chr11 68212870 68213168 -80570304 - AluSx SINE Alu -12 300 1 611 264 98 10 chr11 68213493 68213686 -80569786 - MIR SINE MIR -15 247 38 230 389 50 0 chr11 68213767 68213906 -80569566 + L2 LINE L2 2933 3078 -194 1775 164 3 3 chr11 68214090 68214409 -80569063 - AluSx SINE Alu 0 319 1 305 322 33 25 chr11 68214574 68214695 -80568777 - L1MC4a LINE L1 -1868 5940 5819 984 185 0 6 chr11 68214701 68214874 -80568598 + FRAM SINE Alu 1 164 -12 972 223 52 3 chr11 68214887 68215189 -80568283 - L1ME2 LINE L1 -14 6150 5756 1258 82 0 0 chr11 68215262 68215421 -80568051 + AluY SINE Alu 141 299 -12 2187 118 0 0 chr11 68215431 68215736 -80567736 + AluSx SINE Alu 1 305 -7 231 273 61 20 chr11 68216041 68216140 -80567332 + MIR SINE MIR 49 151 -57 666 287 42 42 chr11 68216222 68216368 -80567104 + MIR SINE MIR 2 150 -112 2291 90 3 0 chr11 68216368 68216667 -80566805 + AluSp SINE Alu 1 300 -13 666 287 42 42 chr11 68216667 68216781 -80566691 + MIR SINE MIR 149 262 0 428 206 206 8 chr11 68217823 68217954 -80565518 + MIR SINE MIR 96 252 -10 1384 174 42 21 chr11 68217959 68218247 -80565225 - AluJb SINE Alu -18 294 1 256 196 20 0 chr11 68219063 68219114 -80564358 + MIR SINE MIR 100 151 -57 688 121 10 5 chr11 68219117 68219311 -80564161 + AluSx SINE Alu 2 294 -18 713 249 88 0 chr11 68219476 68219657 -80563815 + MIR SINE MIR 31 227 -35 195 88 59 0 chr11 68219673 68219707 -80563765 - MIR SINE MIR -75 133 98 874 234 0 0 chr11 68219740 68219894 -80563578 + FRAM SINE Alu 1 154 -12 2233 68 3 3 chr11 68219894 68220187 -80563285 + AluY SINE Alu 1 293 -18 207 321 57 61 chr11 68220279 68220575 -80562897 - L2 LINE L2 -160 3112 2818 351 237 114 0 chr11 68220595 68220709 -80562763 - L2 LINE L2 0 3272 3146 393 293 120 12 chr11 68221726 68221893 -80561579 + MIR SINE MIR 42 226 -36 599 250 106 28 chr11 68221948 68222128 -80561344 + MER91A DNA MER1_type 1 194 -2 380 279 29 0 chr11 68223843 68223947 -80559525 + MIR SINE MIR 84 190 -72 428 262 48 3 chr11 68223955 68224090 -80559382 - MIR SINE MIR -20 188 46 184 170 21 64 chr11 68224250 68224297 -80559175 - MIR SINE MIR -113 149 105 247 113 38 0 chr11 68224534 68224587 -80558885 + (CCG)n Simple_repeat Simple_repeat 2 56 0 201 196 19 65 chr11 68224679 68224786 -80558686 + (CGGGG)n Simple_repeat Simple_repeat 5 106 0 27 0 0 0 chr11 68227072 68227099 -80556373 + AT_rich Low_complexity Low_complexity 1 27 0 2386 80 0 0 chr11 68227193 68227494 -80555978 + AluSx SINE Alu 1 301 -11 724 170 141 7 chr11 68228062 68228197 -80555275 + FRAM SINE Alu 5 157 -9 1721 228 150 21 chr11 68228199 68228577 -80554895 + L1ME3 LINE L1 5483 5962 -200 1891 161 0 3 chr11 68228577 68228888 -80554584 + AluJo SINE Alu 1 310 -2 1721 228 150 21 chr11 68228888 68229083 -80554389 + L1ME3 LINE L1 5962 6130 -32 478 270 152 66 chr11 68229104 68229238 -80554234 - L2 LINE L2 -1 3312 3191 2229 91 0 3 chr11 68229238 68229534 -80553938 + AluSq SINE Alu 2 296 -17 478 270 152 66 chr11 68229534 68229623 -80553849 - L2 LINE L2 -122 3191 3111 2271 87 0 3 chr11 68229623 68229922 -80553550 - AluSg SINE Alu -12 298 1 478 270 152 66 chr11 68229922 68230045 -80553427 - L2 LINE L2 -202 3111 2935 209 238 42 16 chr11 68230569 68230649 -80552823 - MIR SINE MIR -61 147 88 273 327 103 0 chr11 68231070 68231235 -80552237 + L1MC4 LINE L1 5407 5588 -2197 209 206 55 41 chr11 68231463 68231519 -80551953 + MIR SINE MIR 66 125 -137 2230 115 0 0 chr11 68231519 68231831 -80551641 - AluSx SINE Alu 0 312 1 209 206 55 41 chr11 68231831 68231847 -80551625 + MIR SINE MIR 125 139 -123 300 325 0 0 chr11 68232079 68232159 -80551313 - L1MC4 LINE L1 -1339 6703 6624 226 196 0 0 chr11 68232162 68232213 -80551259 + L1MC4 LINE L1 6653 6703 -1339 820 150 8 0 chr11 68232228 68232355 -80551117 - FLAM_C SINE Alu -14 129 2 2197 93 3 10 chr11 68232366 68232668 -80550804 - AluSp SINE Alu -13 300 1 618 240 20 7 chr11 68232668 68232812 -80550660 + MIR SINE MIR 117 262 0 2154 98 3 0 chr11 68232954 68233272 -80550200 + AluSp SINE Alu 1 313 0 442 206 71 84 chr11 68233464 68233619 -80549853 - L2 LINE L2 0 3313 3161 334 219 61 114 chr11 68233888 68233931 -80549541 + MER5B DNA MER1_type 2 46 -132 2095 105 13 16 chr11 68233931 68234244 -80549228 - AluSx SINE Alu 0 312 1 334 219 61 114 chr11 68234244 68234314 -80549158 + MER5B DNA MER1_type 46 109 -69 461 324 6 6 chr11 68234397 68234573 -80548899 - L1MEc LINE L1 -6185 211 36 232 344 53 26 chr11 68234641 68234792 -80548680 + L2 LINE L2 3111 3265 -7 1921 135 0 0 chr11 68234960 68235241 -80548231 + AluSx SINE Alu 1 281 -31 369 125 0 0 chr11 68235246 68235302 -80548170 + MSTC LTR MaLR 373 428 0 617 168 0 9 chr11 68235541 68235648 -80547824 + FLAM_A SINE Alu 23 128 -14 2310 93 0 0 chr11 68235653 68235954 -80547518 + AluSc SINE Alu 1 301 -8 805 119 8 16 chr11 68235968 68236094 -80547378 + AluJo SINE Alu 11 135 -177 31 0 0 0 chr11 68236094 68236125 -80547347 + AT_rich Low_complexity Low_complexity 1 31 0 380 249 70 61 chr11 68236466 68236560 -80546912 + L2 LINE L2 1950 2042 -1272 2297 64 3 0 chr11 68236560 68236855 -80546617 - AluY SINE Alu -15 296 1 380 249 70 61 chr11 68236855 68236989 -80546483 + L2 LINE L2 2042 2180 -1134 189 196 59 0 chr11 68237022 68237073 -80546399 + L2 LINE L2 2641 2694 -620 788 150 57 7 chr11 68237212 68237383 -80546089 + AluJo SINE Alu 137 314 0 2010 134 0 13 chr11 68238273 68238578 -80544894 - AluSx SINE Alu -11 301 1 562 217 113 0 chr11 68238611 68238726 -80544746 + FLAM_A SINE Alu 2 129 -4 584 204 0 92 chr11 68238879 68238905 -80544567 + FLAM_C SINE Alu 12 39 -273 2145 109 0 7 chr11 68238905 68239209 -80544263 - AluSq SINE Alu -11 302 1 584 204 0 92 chr11 68239209 68239324 -80544148 + FLAM_C SINE Alu 39 140 -172 2358 96 0 6 chr11 68239334 68239648 -80543824 + AluSx SINE Alu 1 312 0 302 383 101 9 chr11 68239651 68239878 -80543594 + L1ME LINE L1 3484 3731 -2415 411 336 93 60 chr11 68239882 68240040 -80543432 + L1ME LINE L1 5032 5183 -979 1893 111 30 30 chr11 68240040 68240337 -80543135 + AluSx SINE Alu 1 297 -15 411 336 93 60 chr11 68240337 68240697 -80542775 + L1ME LINE L1 5183 5813 -349 2254 101 0 16 chr11 68240729 68241045 -80542427 + AluSx SINE Alu 1 311 -1 742 149 26 0 chr11 68241077 68241191 -80542281 + FLAM_A SINE Alu 10 126 -16 2431 60 0 0 chr11 68241227 68241526 -80541946 - AluY SINE Alu -12 299 1 1910 128 11 4 chr11 68241537 68241842 -80541630 - AluSx SINE Alu 0 307 1 1364 171 3 49 chr11 68241842 68242128 -80541344 + AluJo SINE Alu 26 298 -14 1957 141 0 10 chr11 68242243 68242548 -80540924 - AluJb SINE Alu -8 304 3 2113 123 13 0 chr11 68242623 68242980 -80540492 - AluSx SINE Alu 0 361 1 377 317 151 35 chr11 68243135 68243231 -80540241 + L1MC4a LINE L1 5315 5398 -2410 1538 244 53 28 chr11 68243231 68243661 -80539811 + LTR47B LTR ERVL 1 441 -2 377 317 151 35 chr11 68243661 68244047 -80539425 + L1MC4a LINE L1 5398 5853 -1955 414 0 0 0 chr11 68244119 68244165 -80539307 + (CA)n Simple_repeat Simple_repeat 2 47 0 628 52 0 0 chr11 68244307 68244384 -80539088 - AluS SINE Alu -234 78 2 2120 95 0 10 chr11 68244678 68244972 -80538500 - AluSq SINE Alu -22 291 1 1733 148 7 7 chr11 68245057 68245393 -80538079 - AluJb SINE Alu 0 336 1 2374 54 0 7 chr11 68245439 68245736 -80537736 + AluY SINE Alu 1 295 -16 955 262 282 29 chr11 68245824 68246162 -80537310 - L2 LINE L2 -752 2562 2311 1853 135 0 26 chr11 68246162 68246466 -80537006 + AluJo SINE Alu 17 312 0 955 262 282 29 chr11 68246466 68246509 -80536963 - L2 LINE L2 -1003 2311 2280 2005 94 4 0 chr11 68246509 68246774 -80536698 + AluSg SINE Alu 1 266 -44 955 262 282 29 chr11 68246774 68247178 -80536294 - L2 LINE L2 -1034 2280 1577 583 242 130 24 chr11 68247200 68247560 -80535912 - L2 LINE L2 -197 3116 2702 1717 159 26 10 chr11 68247560 68247862 -80535610 - AluJb SINE Alu -5 307 1 583 242 130 24 chr11 68247862 68247936 -80535536 - L2 LINE L2 -611 2702 2637 835 175 0 0 chr11 68247936 68248073 -80535399 + AluJo SINE Alu 2 138 -174 876 239 184 52 chr11 68248091 68248435 -80535037 - L2 LINE L2 -690 2624 2212 1842 120 51 4 chr11 68248435 68248709 -80534763 + AluJb SINE Alu 1 287 -25 876 239 184 52 chr11 68248709 68248787 -80534685 - L2 LINE L2 -1102 2212 2146 2239 112 0 3 chr11 68249215 68249528 -80533944 + AluSx SINE Alu 1 312 0 399 232 208 48 chr11 68249543 68249750 -80533722 - MIR SINE MIR -21 241 2 232 284 291 7 chr11 68249814 68249962 -80533510 - MIR SINE MIR -71 191 2 23 0 0 0 chr11 68250054 68250077 -80533395 + AT_rich Low_complexity Low_complexity 1 23 0 1712 77 10 117 chr11 68250077 68250376 -80533096 - AluSx SINE Alu -23 289 23 1946 130 10 10 chr11 68250538 68250845 -80532627 - AluSx SINE Alu -5 307 1 188 310 0 60 chr11 68250954 68251054 -80532418 - MIR SINE MIR -71 137 44 638 277 96 5 chr11 68251757 68251945 -80531527 + MIR SINE MIR 55 259 -3 2147 107 3 10 chr11 68251985 68252293 -80531179 - AluSq SINE Alu -7 306 1 518 139 0 10 chr11 68253835 68253936 -80529536 + (TCCA)n Simple_repeat Simple_repeat 3 102 0 1021 150 6 0 chr11 68254087 68254247 -80529225 + FRAM SINE Alu 1 156 -20 2012 146 0 3 chr11 68254254 68254563 -80528909 + AluSx SINE Alu 1 308 -4 1090 175 0 19 chr11 68254564 68254775 -80528697 + AluJo SINE Alu 85 291 -21 2285 88 0 0 chr11 68254983 68255278 -80528194 - AluSg SINE Alu -15 295 1 938 171 5 78 chr11 68255282 68255300 -80528172 - AluJb SINE Alu -17 295 277 1926 133 14 28 chr11 68255300 68255414 -80528058 - L1MA8 LINE L1 -2 6289 6175 2111 117 3 0 chr11 68255414 68255714 -80527758 - AluSg SINE Alu -9 301 1 1926 133 14 28 chr11 68255714 68255952 -80527520 - L1MA8 LINE L1 -116 6175 5942 216 0 0 0 chr11 68255952 68255976 -80527496 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 938 171 5 78 chr11 68255976 68256124 -80527348 - AluJb SINE Alu -34 278 145 2342 70 0 10 chr11 68256124 68256426 -80527046 - AluY SINE Alu -12 299 1 938 171 5 78 chr11 68256426 68256474 -80526998 - AluJb SINE Alu -167 145 95 3551 131 43 43 chr11 68256474 68257078 -80526394 - L1MA8 LINE L1 -342 5949 5346 1633 156 3 31 chr11 68257078 68257418 -80526054 - AluJo SINE Alu 0 336 5 3551 131 43 43 chr11 68257418 68257430 -80526042 - L1MA8 LINE L1 -945 5346 5335 1943 137 0 13 chr11 68257430 68257730 -80525742 - AluSx SINE Alu -16 296 1 3551 131 43 43 chr11 68257730 68257989 -80525483 - L1MA8 LINE L1 -956 5335 5058 383 38 19 0 chr11 68257993 68258046 -80525426 + (TG)n Simple_repeat Simple_repeat 1 54 0 1003 183 0 6 chr11 68258047 68258222 -80525250 - AluJb SINE Alu -34 278 105 689 130 20 0 chr11 68258301 68258401 -80525071 - AluJb SINE Alu -209 103 2 950 116 12 0 chr11 68258404 68258577 -80524895 - L1MA8 LINE L1 -1443 4703 4529 2191 131 0 0 chr11 68258594 68258907 -80524565 - AluSq SINE Alu 0 313 1 234 279 59 0 chr11 68259441 68259509 -80523963 - MIR SINE MIR -123 139 68 2474 40 3 3 chr11 68259739 68260041 -80523431 - AluY SINE Alu -9 302 1 1718 215 42 44 chr11 68260084 68260494 -80522978 - LTR2 LTR ERV1 0 449 41 285 320 0 13 chr11 68260627 68260705 -80522767 - MIR SINE MIR -171 91 15 1465 169 86 0 chr11 68261185 68261452 -80522020 + AluJo SINE Alu 14 303 -9 476 287 148 14 chr11 68262008 68262231 -80521241 + MIR SINE MIR 4 256 -6 183 259 0 19 chr11 68262955 68263009 -80520463 - MIR SINE MIR -15 247 195 415 321 22 0 chr11 68263267 68263404 -80520068 + L2 LINE L2 298 437 -2877 358 314 180 20 chr11 68263437 68263682 -80519790 + L2 LINE L2 989 1272 -2042 198 0 0 0 chr11 68263882 68263904 -80519568 + (T)n Simple_repeat Simple_repeat 1 22 0 535 237 58 39 chr11 68264076 68264232 -80519240 + MIR SINE MIR 40 198 -64 1843 134 10 7 chr11 68264272 68264563 -80518909 - AluSq SINE Alu -21 292 1 1785 134 18 0 chr11 68264594 68264871 -80518601 - AluSx SINE Alu -20 292 11 366 286 40 40 chr11 68264976 68264996 -80518476 - MIR SINE MIR -42 220 201 2016 141 3 10 chr11 68264996 68265308 -80518164 - AluSx SINE Alu -2 310 1 366 286 40 40 chr11 68265308 68265413 -80518059 - MIR SINE MIR -60 202 95 197 380 83 0 chr11 68265575 68265696 -80517776 - L2 LINE L2 -21 3251 3121 1958 104 49 29 chr11 68265703 68266010 -80517462 + AluSq SINE Alu 1 313 0 263 242 0 125 chr11 68266010 68266130 -80517342 + Charlie6 DNA MER1_type 1180 1284 -2216 877 101 36 89 chr11 68266257 68266351 -80517121 + MSTA LTR MaLR 268 365 -63 185 0 0 39 chr11 68266351 68266377 -80517095 + (TTTTC)n Simple_repeat Simple_repeat 1 25 0 2089 71 4 4 chr11 68266377 68266646 -80516826 - AluY SINE Alu -42 269 1 877 101 36 89 chr11 68266646 68266718 -80516754 + MSTA LTR MaLR 363 426 -2 1930 121 10 3 chr11 68266788 68267078 -80516394 - AluSx SINE Alu -20 292 1 234 279 59 0 chr11 68267795 68267863 -80515609 - MIR SINE MIR -123 139 68 2426 48 0 32 chr11 68268093 68268405 -80515067 - AluY SINE Alu -9 302 1 1542 115 0 5 chr11 68268547 68268765 -80514707 + AluSg/x SINE Alu 80 296 -14 496 262 79 26 chr11 68268776 68269005 -80514467 - LTR43 LTR ERV1 -173 429 189 2110 108 0 23 chr11 68269253 68269559 -80513913 + AluSx SINE Alu 1 299 -13 275 275 75 0 chr11 68269697 68269777 -80513695 - MIR SINE MIR -126 136 51 2446 62 3 0 chr11 68270064 68270369 -80513103 - AluSp SINE Alu -7 306 1 234 193 0 35 chr11 68270376 68270433 -80513039 - MIR SINE MIR -52 156 102 1810 134 4 7 chr11 68270485 68270761 -80512711 - AluSx SINE Alu -37 275 1 1801 106 0 0 chr11 68271092 68271337 -80512135 - AluSc SINE Alu -20 289 45 223 196 0 20 chr11 68271666 68271717 -80511755 + CT-rich Low_complexity Low_complexity 1 50 0 1820 140 32 0 chr11 68271898 68272177 -80511295 - AluJb SINE Alu -24 288 1 232 322 33 11 chr11 68273379 68273469 -80510003 - MIR SINE MIR -110 152 61 298 264 76 49 chr11 68273550 68273694 -80509778 - MIR SINE MIR -80 182 35 2398 74 0 0 chr11 68274341 68274637 -80508835 - AluSc SINE Alu -13 296 1 1665 131 0 76 chr11 68274824 68275164 -80508308 + AluJb SINE Alu 1 316 0 1594 139 62 7 chr11 68275774 68276047 -80507425 + AluJb SINE Alu 11 298 -14 2134 129 0 0 chr11 68276051 68276361 -80507111 + AluSx SINE Alu 3 312 0 392 344 81 0 chr11 68276373 68276559 -80506913 + L1M4 LINE L1 3336 3536 -2610 408 334 127 27 chr11 68276847 68277179 -80506293 + L1M4 LINE L1 3884 4248 -1898 1598 140 13 68 chr11 68277460 68277767 -80505705 + AluJo SINE Alu 5 294 -18 1399 94 16 0 chr11 68277769 68277961 -80505511 + AluSg/x SINE Alu 103 297 -15 271 333 20 7 chr11 68277964 68278053 -80505419 + L1M4 LINE L1 4784 4877 -1269 2438 57 0 3 chr11 68278053 68278353 -80505119 + AluY SINE Alu 1 299 -12 271 333 20 7 chr11 68278353 68278413 -80505059 + L1M4 LINE L1 4877 4935 -1211 187 191 32 0 chr11 68278515 68278578 -80504894 + (TA)n Simple_repeat Simple_repeat 1 65 0 226 307 30 50 chr11 68278603 68278704 -80504768 - L2 LINE L2 -1546 1768 1670 1019 111 0 0 chr11 68278850 68278985 -80504487 + AluSq/x SINE Alu 1 135 -177 1961 125 3 7 chr11 68278985 68279288 -80504184 + AluSx SINE Alu 1 302 -10 231 273 61 20 chr11 68279450 68279549 -80503923 - MIR SINE MIR -57 151 49 2132 121 0 0 chr11 68279854 68280159 -80503313 - AluSx SINE Alu -7 305 1 1932 141 3 16 chr11 68280274 68280586 -80502886 - AluSx SINE Alu -4 308 1 300 305 48 9 chr11 68280587 68280692 -80502780 - MIR SINE MIR -59 203 95 197 380 83 0 chr11 68280854 68280975 -80502497 - L2 LINE L2 -21 3251 3121 1902 114 49 29 chr11 68280982 68281289 -80502183 + AluSq SINE Alu 1 313 0 198 0 0 0 chr11 68281491 68281513 -80501959 + (A)n Simple_repeat Simple_repeat 1 22 0 283 291 105 31 chr11 68281516 68281774 -80501698 - HAL1b LINE L1 -1005 343 67 2214 97 3 0 chr11 68282448 68282737 -80500735 - AluSx SINE Alu -22 290 1 1865 168 26 0 chr11 68282994 68283298 -80500174 - AluJb SINE Alu 0 312 1 709 274 141 13 chr11 68283472 68283893 -80499579 + ERVL LTR ERVL 4839 5341 -423 483 149 99 159 chr11 68283898 68283928 -80499544 - MER53 DNA DNA 0 189 159 2459 154 20 2 chr11 68283928 68284324 -80499148 - MER57A LTR ERV1 0 403 1 483 149 99 159 chr11 68284324 68284335 -80499137 - MER53 DNA DNA -30 159 149 1996 143 7 0 chr11 68284335 68284643 -80498829 + AluSx SINE Alu 3 312 0 483 149 99 159 chr11 68284643 68284801 -80498671 - MER53 DNA DNA -40 149 1 4554 115 51 104 chr11 68284940 68284997 -80498475 - MER49 LTR ERV1 -8 915 856 1674 167 0 4 chr11 68284997 68285273 -80498199 + AluJo SINE Alu 1 275 -37 4554 115 51 104 chr11 68285273 68285753 -80497719 - MER49 LTR ERV1 -67 856 450 2183 72 0 14 chr11 68285753 68286043 -80497429 + AluSx SINE Alu 1 286 -26 4554 115 51 104 chr11 68286043 68286471 -80497001 - MER49 LTR ERV1 -473 450 1 391 275 13 54 chr11 68286572 68286648 -80496824 - MLT1I LTR MaLR -195 214 145 2184 95 10 0 chr11 68286648 68286944 -80496528 - AluSx SINE Alu -13 299 1 391 275 13 54 chr11 68286944 68287016 -80496456 - MLT1I LTR MaLR -264 145 72 404 296 34 25 chr11 68287305 68287508 -80495964 + L1ME LINE L1 5587 5791 -379 244 244 89 24 chr11 68287898 68288021 -80495451 + LTR67 LTR ERVL 424 554 -3 243 257 29 0 chr11 68288024 68288094 -80495378 - MIR SINE MIR -101 107 36 2279 96 0 0 chr11 68288124 68288426 -80495046 - AluSx SINE Alu -10 302 1 317 235 185 34 chr11 68288625 68288744 -80494728 + MIR SINE MIR 67 203 -59 1288 169 75 48 chr11 68289082 68289377 -80494095 + AluJb SINE Alu 1 303 -9 201 238 63 48 chr11 68289404 68289467 -80494005 + MIR SINE MIR 55 118 -90 743 258 68 7 chr11 68289600 68289936 -80493536 + MSTD LTR MaLR 1 396 0 1888 152 81 8 chr11 68342064 68342445 -80441027 + L1MB7 LINE L1 5608 6016 -168 1791 181 7 7 chr11 68342521 68342820 -80440652 + AluJb SINE Alu 1 299 -13 2154 117 7 3 chr11 68342820 68343129 -80440343 + AluY SINE Alu 1 310 -1 2362 101 3 0 chr11 68343837 68344133 -80439339 - AluSx SINE Alu -15 297 1 216 0 0 0 chr11 68344439 68344463 -80439009 + (CA)n Simple_repeat Simple_repeat 2 25 0 279 0 0 0 chr11 68344500 68344531 -80438941 + (CA)n Simple_repeat Simple_repeat 1 31 0 645 343 46 25 chr11 68344746 68345070 -80438402 - L3 LINE CR1 -1 1576 1246 261 302 74 67 chr11 68345103 68345415 -80438057 - L1P LINE L1 -817 5329 5012 239 71 24 0 chr11 68345415 68345457 -80438015 + (TG)n Simple_repeat Simple_repeat 2 44 0 261 302 74 67 chr11 68345457 68345561 -80437911 - L1P LINE L1 -1134 5012 4910 293 309 174 32 chr11 68345626 68345908 -80437564 - L3 LINE CR1 -661 916 595 190 339 0 0 chr11 68346018 68346080 -80437392 - MER5A DNA MER1_type 0 189 128 930 68 60 0 chr11 68346090 68346207 -80437265 - AluSc SINE Alu -185 124 1 1932 229 63 4 chr11 68346208 68346667 -80436805 - MLT1F LTR MaLR -56 486 1 2545 36 0 0 chr11 68347031 68347339 -80436133 + AluY SINE Alu 1 308 0 256 264 272 8 chr11 68347457 68347836 -80435636 + L1M4 LINE L1 2110 2588 -3558 336 333 0 10 chr11 68347883 68347979 -80435493 + L1M4 LINE L1 2663 2757 -3389 601 170 0 0 chr11 68347979 68348079 -80435393 - AluSg/x SINE Alu -9 301 202 199 279 70 23 chr11 68348215 68348301 -80435171 - MIR3 SINE MIR -31 177 88 425 248 53 0 chr11 68348441 68348554 -80434918 - L2 LINE L2 0 3313 3195 193 351 13 0 chr11 68348660 68348737 -80434735 - MIR SINE MIR -73 135 58 264 219 0 2 chr11 68348787 68348847 -80434625 - MIR SINE MIR -63 145 93 209 250 191 0 chr11 68348913 68348981 -80434491 + MIR SINE MIR 35 115 -93 713 244 107 13 chr11 68349868 68350093 -80433379 - MIR SINE MIR -16 246 1 644 246 46 104 chr11 68351414 68351760 -80431712 - L3 LINE CR1 -60 1517 1192 25 0 0 0 chr11 68353044 68353069 -80430403 + GC_rich Low_complexity Low_complexity 1 25 0 234 292 11 22 chr11 68353079 68353168 -80430304 + G-rich Low_complexity Low_complexity 2 89 0 2266 53 14 14 chr11 68354189 68354516 -80428956 + AluY SINE Alu 1 327 0 217 208 169 13 chr11 68356727 68356804 -80426668 + L2 LINE L2 3180 3268 -4 507 96 0 0 chr11 68356988 68357061 -80426411 + U13 snRNA snRNA 1 73 -31 1518 158 34 47 chr11 68357241 68357538 -80425934 + AluJo SINE Alu 1 293 -19 1045 128 0 56 chr11 68357538 68357727 -80425745 + L1PA10 LINE L1 5989 6168 0 2192 113 14 0 chr11 68357746 68358038 -80425434 + AluSx SINE Alu 1 296 -16 2383 94 3 3 chr11 68358040 68358339 -80425133 + AluSx SINE Alu 1 299 -13 567 277 62 11 chr11 68359595 68359772 -80423700 + MER58C DNA MER1_type 30 215 0 2211 126 7 0 chr11 68359965 68360267 -80423205 + AluJb SINE Alu 1 304 -8 510 271 8 17 chr11 68360848 68361013 -80422459 - L1ME3A LINE L1 -1 6163 6006 2596 65 13 0 chr11 68361539 68361848 -80421624 + AluSp SINE Alu 1 313 0 448 309 131 11 chr11 68362340 68362531 -80420941 - MIR SINE MIR -21 241 28 1853 163 16 16 chr11 68364635 68364941 -80418531 - AluSx SINE Alu -6 306 1 287 308 113 8 chr11 68365228 68365361 -80418111 - MIR3 SINE MIR -2 206 60 627 292 71 50 chr11 68366022 68366200 -80417272 - HAL1b LINE L1 -1 1347 1174 773 146 0 36 chr11 68366200 68366337 -80417135 + FLAM_C SINE Alu 2 133 0 627 292 71 50 chr11 68366337 68366778 -80416694 - HAL1b LINE L1 -174 1174 715 481 219 62 31 chr11 68367102 68367230 -80416242 + L2 LINE L2 3176 3307 -6 238 250 33 0 chr11 68367670 68367730 -80415742 - L2 LINE L2 -15 3298 3237 369 238 74 90 chr11 68367772 68367961 -80415511 - L2 LINE L2 -213 3100 2915 288 221 63 21 chr11 68367963 68368058 -80415414 - L1MEc LINE L1 -3665 2550 2452 * 4814 217 81 106 chr11 68368048 68368540 -80414932 - L1MEc LINE L1 -4192 2204 1701 725 142 0 85 chr11 68368540 68368681 -80414791 + FLAM_C SINE Alu 5 133 -10 4814 217 81 106 chr11 68368681 68368805 -80414667 - L1MEc LINE L1 -4695 1701 1575 1892 143 0 19 chr11 68368805 68369112 -80414360 - AluSx SINE Alu -3 309 9 4814 217 81 106 chr11 68369112 68369707 -80413765 - L1MEc LINE L1 -4821 1575 967 224 29 0 29 chr11 68369707 68369741 -80413731 + (TTTTA)n Simple_repeat Simple_repeat 5 37 0 1963 117 0 7 chr11 68369741 68370023 -80413449 - AluSx SINE Alu -32 280 1 4814 217 81 106 chr11 68370023 68370159 -80413313 - L1MEc LINE L1 -5428 968 830 834 165 0 0 chr11 68370159 68370292 -80413180 - FLAM_C SINE Alu 0 133 1 4814 217 81 106 chr11 68370292 68371025 -80412447 - L1MEc LINE L1 -5566 830 35 562 261 146 22 chr11 68371028 68371254 -80412218 - L2 LINE L2 -397 2917 2664 22 35 0 0 chr11 68373891 68373920 -80409552 + GC_rich Low_complexity Low_complexity 1 29 0 34 72 0 0 chr11 68374037 68374106 -80409366 + GC_rich Low_complexity Low_complexity 1 69 0 30 0 0 0 chr11 68374247 68374277 -80409195 + GC_rich Low_complexity Low_complexity 1 30 0 249 109 0 0 chr11 68374422 68374468 -80409004 + (CAG)n Simple_repeat Simple_repeat 1 46 0 27 73 0 0 chr11 68374708 68374763 -80408709 + GC_rich Low_complexity Low_complexity 1 55 0 398 228 96 73 chr11 68375954 68376173 -80407299 - L1ME3A LINE L1 -220 5950 5727 1666 167 3 23 chr11 68377603 68377909 -80405563 - AluJo SINE Alu -12 300 1 257 291 0 73 chr11 68377942 68378052 -80405420 - HAL1b LINE L1 -11 1337 1236 2330 70 0 16 chr11 68378777 68379092 -80404380 - AluY SINE Alu -1 310 1 1759 168 3 3 chr11 68379092 68379390 -80404082 - AluJb SINE Alu -14 298 1 2295 74 7 0 chr11 68379588 68379886 -80403586 - AluY SINE Alu -11 300 1 1989 109 28 0 chr11 68380255 68380540 -80402932 - AluSx SINE Alu -17 295 3 1899 125 10 3 chr11 68381130 68381419 -80402053 + AluJb SINE Alu 1 291 -21 2100 119 3 0 chr11 68381549 68381852 -80401620 - AluSq SINE Alu -9 304 1 1679 173 0 13 chr11 68382402 68382702 -80400770 - AluJo SINE Alu -14 298 3 1810 111 82 0 chr11 68382755 68383035 -80400437 - AluSx SINE Alu -9 303 1 189 0 0 0 chr11 68383154 68383175 -80400297 + (T)n Simple_repeat Simple_repeat 1 21 0 241 212 129 12 chr11 68383438 68383523 -80399949 + L2 LINE L2 2682 2776 -538 * 262 243 0 28 chr11 68383503 68383604 -80399868 - L2 LINE L2 -1 3271 3173 * 354 317 194 17 chr11 68383603 68383878 -80399594 + L2 LINE L2 2739 3060 -253 679 270 101 29 chr11 68384054 68384332 -80399140 - L2 LINE L2 0 3313 3016 308 308 46 15 chr11 68384376 68384519 -80398953 - MIR SINE MIR -61 147 33 616 216 130 110 chr11 68384663 68384801 -80398671 + MIR SINE MIR 4 151 -111 1934 147 0 13 chr11 68384801 68385115 -80398357 + AluJo SINE Alu 2 311 -1 616 216 130 110 chr11 68385115 68385230 -80398242 + MIR SINE MIR 151 262 0 208 0 62 0 chr11 68385283 68385315 -80398157 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 1378 188 106 0 chr11 68386068 68386350 -80397122 - AluJo SINE Alu 0 312 1 2144 82 31 7 chr11 68386433 68386727 -80396745 + AluSq SINE Alu 1 301 -12 1454 264 141 28 chr11 68387789 68388565 -80394907 - L2 LINE L2 -2 3311 2440 1565 226 135 32 chr11 68389531 68389984 -80393488 - MER20B DNA MER1_type -3 780 264 2608 23 0 3 chr11 68389984 68390291 -80393181 - AluY SINE Alu -5 306 1 1565 226 135 32 chr11 68390291 68390364 -80393108 - MER20B DNA MER1_type -519 264 200 395 225 0 25 chr11 68390364 68390444 -80393028 + MER69 DNA AcHobo 1 78 -2448 1764 153 0 3 chr11 68390471 68390753 -80392719 - AluSx SINE Alu -14 298 18 292 118 39 39 chr11 68390761 68390812 -80392660 + MER4D LTR ERV1 779 829 -74 2066 263 80 36 chr11 68390828 68391085 -80392387 - L1ME3 LINE L1 -2 6160 5916 2024 110 0 7 chr11 68391085 68391384 -80392088 - AluSx SINE Alu -3 309 13 2066 263 80 36 chr11 68391384 68392020 -80391452 - L1ME3 LINE L1 -246 5916 5309 225 0 0 0 chr11 68392020 68392045 -80391427 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2066 263 80 36 chr11 68392045 68392833 -80390639 - L1ME3 LINE L1 -853 5309 4398 443 210 60 0 chr11 68392833 68392933 -80390539 + MER69 DNA AcHobo 2421 2526 0 422 229 108 83 chr11 68392942 68393099 -80390373 - MER20B DNA MER1_type -555 228 68 240 310 102 56 chr11 68393348 68393545 -80389927 + MIR SINE MIR 7 212 -50 2471 68 0 0 chr11 68393578 68393886 -80389586 + AluY SINE Alu 1 308 -3 372 43 0 0 chr11 68394033 68394079 -80389393 + (GCTTG)n Simple_repeat Simple_repeat 2 47 0 248 77 26 0 chr11 68394080 68394119 -80389353 + (TTCTC)n Simple_repeat Simple_repeat 3 42 0 1831 147 16 3 chr11 68394119 68394425 -80389047 - AluJb SINE Alu -2 310 1 1799 158 10 0 chr11 68394994 68395297 -80388175 - AluSx SINE Alu -6 306 1 8344 26 7 0 chr11 68395377 68397116 -80386356 - L1PA3 LINE L1 0 6155 4410 18991 19 1 0 chr11 68397116 68399319 -80384153 + L1PA3 LINE L1 2202 4405 -1741 2007 136 0 0 chr11 68399319 68399614 -80383858 - AluSx SINE Alu -17 295 1 247 176 81 14 chr11 68399624 68399698 -80383774 - HAL1 LINE L1 0 2507 2429 1457 162 8 12 chr11 68399782 68400035 -80383437 - AluSx SINE Alu -6 306 55 819 187 47 12 chr11 68400048 68400219 -80383253 - AluJ SINE Alu -1 311 135 1921 168 56 118 chr11 68400219 68400346 -80383126 - L1ME2 LINE L1 -334 5830 5697 2197 74 10 7 chr11 68400346 68400645 -80382827 - AluSp SINE Alu -13 300 1 1921 168 56 118 chr11 68400645 68400709 -80382763 - L1ME2 LINE L1 -467 5697 5631 693 172 15 30 chr11 68400709 68400843 -80382629 - AluJ SINE Alu -170 132 1 1921 168 56 118 chr11 68400843 68400973 -80382499 - L1ME2 LINE L1 -533 5631 5494 2039 222 91 32 chr11 68400973 68401532 -80381940 + MLT1E LTR MaLR 1 592 -1 1921 168 56 118 chr11 68401532 68401740 -80381732 - L1ME2 LINE L1 -670 5494 5336 1775 150 10 3 chr11 68401740 68402034 -80381438 + AluSx SINE Alu 1 296 -16 1921 168 56 118 chr11 68402034 68402130 -80381342 - L1ME2 LINE L1 -828 5336 5236 209 204 20 0 chr11 68402130 68402179 -80381293 + (TG)n Simple_repeat Simple_repeat 1 50 0 1172 316 63 33 chr11 68402208 68402869 -80380603 - L1MC4 LINE L1 -52 7990 7310 958 184 6 0 chr11 68402876 68403055 -80380417 - AluSg/x SINE Alu 0 310 131 201 39 0 0 chr11 68403057 68403083 -80380389 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2090 88 0 3 chr11 68403083 68403367 -80380105 - AluY SINE Alu -28 283 1 633 229 0 45 chr11 68403367 68403384 -80380088 - L1MC4a LINE L1 -1203 6605 6589 1746 157 0 26 chr11 68403384 68403689 -80379783 - AluJb SINE Alu -15 297 1 1977 77 3 99 chr11 68403697 68404020 -80379452 - AluSq SINE Alu -18 295 4 633 229 0 45 chr11 68404020 68404196 -80379276 - L1MC4a LINE L1 -1226 6582 6447 1232 264 65 50 chr11 68404406 68404951 -80378521 - MLT1G1 LTR MaLR 0 595 1 1920 134 3 0 chr11 68406144 68406468 -80377004 - AluSx SINE Alu 0 325 1 2029 129 3 0 chr11 68406664 68406974 -80376498 - AluSx SINE Alu -1 311 1 1909 118 39 23 chr11 68407343 68407648 -80375824 - AluSx SINE Alu -2 310 1 1012 237 19 50 chr11 68407648 68407965 -80375507 - L1MC5 LINE L1 -48 7913 7607 1118 203 0 47 chr11 68408218 68408450 -80375022 + MER58A DNA MER1_type 4 224 0 430 280 21 35 chr11 68408641 68408784 -80374688 + L2 LINE L2 3171 3311 -2 2049 117 3 0 chr11 68408976 68409274 -80374198 + AluSp SINE Alu 1 299 -14 1514 114 21 108 chr11 68409989 68410124 -80373348 + AluJo SINE Alu 8 153 -159 2191 106 16 0 chr11 68410124 68410427 -80373045 + AluSx SINE Alu 1 308 -4 1514 114 21 108 chr11 68410427 68410616 -80372856 + AluJo SINE Alu 153 304 -8 1087 237 151 42 chr11 68410915 68411427 -80372045 + L2 LINE L2 2752 3312 -1 1523 202 48 31 chr11 68411916 68412273 -80371199 - MLT1B LTR MaLR 0 390 28 1491 169 0 122 chr11 68412275 68412618 -80370854 + AluJo SINE Alu 1 301 -1 180 152 0 0 chr11 68412621 68412654 -80370818 + GA-rich Low_complexity Low_complexity 3 35 0 910 158 24 18 chr11 68412658 68412822 -80370650 + FRAM SINE Alu 1 162 -14 222 314 0 14 chr11 68412934 68413004 -80370468 - L2 LINE L2 -1 3271 3203 803 133 28 28 chr11 68413114 68413257 -80370215 + FLAM_C SINE Alu 1 143 0 852 167 6 32 chr11 68414137 68414293 -80369179 - FAM SINE Alu -16 169 18 1728 142 23 13 chr11 68414401 68414703 -80368769 - AluSx SINE Alu -7 305 1 1398 128 152 100 chr11 68414847 68415176 -80368296 - MER7A DNA MER2_type -2 344 1 1303 290 145 33 chr11 68415258 68415479 -80367993 + L2 LINE L2 2256 2451 -862 1967 113 36 0 chr11 68415479 68415780 -80367692 - AluSx SINE Alu 0 312 1 1303 290 145 33 chr11 68415780 68416501 -80366971 + L2 LINE L2 2451 3311 -2 432 273 148 22 chr11 68416580 68416891 -80366581 + L1MA8 LINE L1 5655 6004 -287 * 1531 193 117 24 chr11 68416617 68417037 -80366435 + L1ME2 LINE L1 5696 6154 -10 2464 67 0 0 chr11 68417972 68418270 -80365202 + AluY SINE Alu 1 298 -13 319 279 50 43 chr11 68418271 68418411 -80365061 - L1MC4a LINE L1 -1944 5864 5724 2099 137 0 13 chr11 68418764 68419071 -80364401 + AluJb SINE Alu 1 303 -9 503 219 16 122 chr11 68420330 68420452 -80363020 - L2 LINE L2 0 3313 3228 1876 159 14 3 chr11 68420452 68420747 -80362725 + AluJb SINE Alu 1 298 -14 503 219 16 122 chr11 68420747 68420870 -80362602 - L2 LINE L2 -85 3228 3094 496 188 68 0 chr11 68420902 68421019 -80362453 + Charlie4 DNA MER1_type 1831 1955 -6 2220 129 3 0 chr11 68421019 68421329 -80362143 + AluSq SINE Alu 1 311 -2 2440 76 7 0 chr11 68421406 68421707 -80361765 + AluSp SINE Alu 1 303 -10 1838 181 0 0 chr11 68422171 68422474 -80360998 + AluJo SINE Alu 1 303 -9 925 128 0 40 chr11 68422486 68422634 -80360838 + FLAM_C SINE Alu 1 142 -1 1321 194 95 18 chr11 68423028 68423311 -80360161 + MER58B DNA MER1_type 37 341 0 224 338 70 38 chr11 68423598 68423755 -80359717 + MIR3 SINE MIR 23 184 -24 * 349 313 95 6 chr11 68423751 68423943 -80359529 + MIR SINE MIR 12 217 -42 785 54 0 0 chr11 68423992 68424084 -80359388 - AluSx SINE Alu -12 298 207 1135 122 0 6 chr11 68424085 68424241 -80359231 - AluSx SINE Alu -157 155 1 496 202 234 58 chr11 68424421 68424609 -80358863 + MIR SINE MIR 4 224 -38 15339 117 32 29 chr11 68424827 68427034 -80356438 + Tigger1 DNA MER2_type 9 2208 -210 2290 112 0 7 chr11 68427034 68427337 -80356135 - AluSx SINE Alu -11 301 1 15339 117 32 29 chr11 68427337 68427349 -80356123 + Tigger1 DNA MER2_type 2208 2218 -200 209 56 0 28 chr11 68427349 68427385 -80356087 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2231 86 0 0 chr11 68427387 68427666 -80355806 - AluY SINE Alu -32 279 1 15339 117 32 29 chr11 68427666 68427837 -80355635 + Tigger1 DNA MER2_type 2218 2410 -8 353 313 74 54 chr11 68427865 68428162 -80355310 - L2 LINE L2 -23 3249 2947 425 139 30 79 chr11 68428172 68428273 -80355199 + MIR SINE MIR 85 180 -82 758 293 53 3 chr11 68428568 68428851 -80354621 - MLT1L LTR MaLR -4 611 315 504 127 10 4 chr11 68428854 68428961 -80354511 - L1P4 LINE L1 -386 5775 5677 1113 103 0 0 chr11 68428975 68429131 -80354341 + L1PB1 LINE L1 5928 6083 -68 2340 113 0 0 chr11 68429603 68429903 -80353569 + AluSx SINE Alu 1 300 -12 864 254 107 17 chr11 68431722 68432076 -80351396 + L1MC5 LINE L1 7268 7653 -308 706 224 80 43 chr11 68432130 68432429 -80351043 + L1MC5 LINE L1 7615 7924 -37 2325 101 0 0 chr11 68432446 68432743 -80350729 + AluSx SINE Alu 1 297 -15 677 210 28 70 chr11 68432759 68432973 -80350499 + L1ME2 LINE L1 5959 6163 -1 2162 129 0 0 chr11 68432995 68433289 -80350183 + AluSx SINE Alu 1 294 -18 315 0 0 0 chr11 68433301 68433336 -80350136 + (TTA)n Simple_repeat Simple_repeat 1 35 0 787 132 35 0 chr11 68433339 68433453 -80350019 - FLAM_C SINE Alu -15 118 1 209 410 42 7 chr11 68433882 68434026 -80349446 - L2 LINE L2 -3 3269 3121 270 292 119 54 chr11 68434524 68434636 -80348836 - L1MC/D LINE L1 -865 5281 5178 1622 189 7 17 chr11 68434636 68434933 -80348539 + AluJb SINE Alu 5 298 -14 270 292 119 54 chr11 68434933 68435491 -80347981 - L1MC/D LINE L1 -968 5178 5061 993 99 0 23 chr11 68435491 68435622 -80347850 + FLAM_C SINE Alu 1 128 -5 270 292 119 54 chr11 68435622 68435678 -80347794 - L1MC/D LINE L1 -1085 5061 5010 416 300 18 59 chr11 68435678 68435848 -80347624 + L2 LINE L2 2248 2410 -904 1720 144 27 90 chr11 68435849 68435909 -80347563 + MER2 DNA MER2_type 1 63 -282 2049 173 32 22 chr11 68435909 68436280 -80347192 + THE1C LTR MaLR 1 375 0 1720 144 27 90 chr11 68436280 68436527 -80346945 + MER2 DNA MER2_type 63 284 -61 2060 126 3 0 chr11 68436527 68436813 -80346659 - AluSx SINE Alu -25 287 1 1720 144 27 90 chr11 68436813 68436872 -80346600 + MER2 DNA MER2_type 284 345 0 432 317 59 35 chr11 68436874 68437076 -80346396 + L2 LINE L2 2412 2618 -696 1224 184 73 8 chr11 68437405 68437650 -80345822 - AluJo SINE Alu -51 261 1 24 0 0 0 chr11 68437707 68437731 -80345741 + AT_rich Low_complexity Low_complexity 1 24 0 1252 94 0 28 chr11 68438101 68438282 -80345190 - AluSx SINE Alu -2 308 133 2032 113 39 0 chr11 68438778 68439060 -80344412 + AluSx SINE Alu 1 293 -19 2365 101 0 0 chr11 68439509 68439806 -80343666 - AluSx SINE Alu -15 297 1 216 0 0 0 chr11 68440112 68440136 -80343336 + (CA)n Simple_repeat Simple_repeat 2 25 0 243 0 0 0 chr11 68440173 68440200 -80343272 + (CA)n Simple_repeat Simple_repeat 1 27 0 660 343 46 25 chr11 68440415 68440739 -80342733 - L3 LINE CR1 -1 1576 1246 332 264 96 79 chr11 68440772 68441084 -80342388 - L1M4 LINE L1 -817 5329 5007 270 73 0 0 chr11 68441084 68441125 -80342347 + (TG)n Simple_repeat Simple_repeat 2 42 0 332 264 96 79 chr11 68441125 68441261 -80342211 - L1M4 LINE L1 -1139 5007 4875 295 305 174 32 chr11 68441294 68441576 -80341896 - L3 LINE CR1 -661 916 595 238 306 0 0 chr11 68441681 68441743 -80341729 - MER5A DNA MER1_type 0 189 128 987 121 0 0 chr11 68441744 68441876 -80341596 - AluSx SINE Alu -180 133 2 237 105 53 0 chr11 68441888 68441926 -80341546 - MER5A DNA MER1_type -83 106 67 234 0 0 0 chr11 68441930 68441956 -80341516 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1084 201 87 34 chr11 68441957 68442221 -80341251 - AluJo SINE Alu -32 280 3 338 190 0 0 chr11 68442227 68442285 -80341187 - MER5A DNA MER1_type -118 71 14 670 209 157 13 chr11 68442293 68442446 -80341026 - MER96 DNA MER1_type 0 175 1 2427 67 0 14 chr11 68442532 68442829 -80340643 - AluSc SINE Alu -16 293 1 308 210 0 32 chr11 68442833 68442895 -80340577 + MER5A DNA MER1_type 130 189 0 4665 112 23 27 chr11 68443045 68443795 -80339677 - L1MA2 LINE L1 0 6304 5558 460 271 173 0 chr11 68443965 68444098 -80339374 - MER5A DNA MER1_type 0 189 34 535 235 45 137 chr11 68444397 68444946 -80338526 - L1MC4a LINE L1 -1643 6165 5667 1099 168 24 108 chr11 68445138 68445220 -80338252 - AluJo SINE Alu -15 297 210 2068 144 0 0 chr11 68445220 68445518 -80337954 + AluSx SINE Alu 1 298 -14 1099 168 24 108 chr11 68445518 68445646 -80337826 - AluJo SINE Alu -102 210 117 2200 109 3 13 chr11 68445646 68445958 -80337514 - AluSx SINE Alu -3 309 1 1099 168 24 108 chr11 68445958 68446043 -80337429 - AluJo SINE Alu -195 117 26 1671 136 43 30 chr11 68446154 68446456 -80337016 - AluJb SINE Alu -6 306 1 27 0 0 0 chr11 68446463 68446490 -80336982 + AT_rich Low_complexity Low_complexity 1 27 0 2054 151 0 0 chr11 68447489 68447788 -80335684 - AluSx SINE Alu -13 299 1 2198 111 3 3 chr11 68448486 68448783 -80334689 - AluSx SINE Alu -15 297 1 445 262 60 18 chr11 68448917 68449085 -80334387 + L1M4b LINE L1 29 203 -6656 307 244 87 122 chr11 68449318 68449687 -80333785 + L1M4b LINE L1 832 1187 -5668 355 264 194 13 chr11 68449761 68449916 -80333556 + L1M4b LINE L1 1206 1388 -5471 2492 260 75 38 chr11 68449974 68450613 -80332859 + L1M4b LINE L1 1373 2065 -4894 2023 120 0 43 chr11 68450613 68450938 -80332534 + AluSx SINE Alu 1 311 -1 2492 260 75 38 chr11 68450938 68451304 -80332168 + L1M4b LINE L1 2065 2416 -4543 525 279 36 44 chr11 68451330 68451517 -80331955 + L1M4b LINE L1 2454 2640 -4498 1803 130 93 9 chr11 68451517 68451839 -80331633 + L1MA3 LINE L1 5957 6305 0 525 279 36 44 chr11 68451839 68451902 -80331570 + L1M4b LINE L1 2640 2702 -4436 26 0 0 0 chr11 68451989 68452015 -80331457 + AT_rich Low_complexity Low_complexity 1 26 0 1702 158 36 4 chr11 68452015 68452294 -80331178 - AluJo SINE Alu -24 288 1 241 282 55 18 chr11 68452378 68452488 -80330984 + L1ME LINE L1 5713 5826 -338 2172 107 0 0 chr11 68452492 68452793 -80330679 + AluSx SINE Alu 1 301 0 2207 117 10 0 chr11 68452939 68453239 -80330233 - AluSx SINE Alu -9 303 1 261 0 0 0 chr11 68453528 68453557 -80329915 + (TG)n Simple_repeat Simple_repeat 2 30 0 2308 93 3 0 chr11 68453608 68453898 -80329574 - AluSp SINE Alu -22 291 1 667 274 81 49 chr11 68454599 68455045 -80328427 + L1ME LINE L1 46 505 -5565 2240 259 66 62 chr11 68455160 68455800 -80327672 + L1ME2 LINE L1 253 889 -5372 1844 152 28 3 chr11 68455800 68456089 -80327383 + AluJo SINE Alu 1 296 -16 2240 259 66 62 chr11 68456089 68456470 -80327002 + L1ME2 LINE L1 889 1267 -4994 603 126 19 29 chr11 68456470 68456573 -80326899 + U13 snRNA snRNA 1 102 -2 2240 259 66 62 chr11 68456573 68456969 -80326503 + L1ME2 LINE L1 1267 1722 -4539 1043 176 12 6 chr11 68456977 68457142 -80326330 - FAM SINE Alu -7 168 3 862 157 0 15 chr11 68457212 68457346 -80326126 + AluJo/FLAM SINE Alu 1 132 -180 2314 83 7 0 chr11 68457349 68457649 -80325823 + AluY SINE Alu 1 302 -9 300 260 21 21 chr11 68457659 68457755 -80325717 + L1ME2 LINE L1 1768 1863 -4398 * 1138 201 31 4 chr11 68457752 68458006 -80325466 + L1ME2 LINE L1 2160 2420 -3660 1904 163 0 7 chr11 68458006 68458301 -80325171 + AluJo SINE Alu 3 295 -17 2480 254 111 26 chr11 68458309 68459989 -80323483 + L1ME2 LINE L1 4195 6017 -81 414 0 0 0 chr11 68460054 68460100 -80323372 + (TA)n Simple_repeat Simple_repeat 1 46 0 2051 114 28 7 chr11 68460101 68460390 -80323082 - AluSx SINE Alu -17 295 1 2451 68 3 0 chr11 68460418 68460714 -80322758 + AluY SINE Alu 1 297 -14 768 266 45 80 chr11 68460998 68461396 -80322076 + HAL1 LINE L1 12 395 -2112 334 329 100 24 chr11 68461603 68461813 -80321659 + HAL1 LINE L1 594 819 -1688 1941 143 0 27 chr11 68461813 68462114 -80321358 - AluJb SINE Alu -19 293 1 339 196 182 28 chr11 68462118 68462261 -80321211 + HAL1 LINE L1 957 1121 -1386 1365 218 0 11 chr11 68462261 68462536 -80320936 + AluJo SINE Alu 1 272 -40 1236 244 132 19 chr11 68462537 68463001 -80320471 + HAL1 LINE L1 1142 1657 -850 2389 81 3 0 chr11 68463001 68463299 -80320173 + AluSp SINE Alu 1 299 -14 585 247 34 2 chr11 68463299 68463453 -80320019 - L1ME LINE L1 -534 5628 5468 475 231 211 7 chr11 68464081 68464228 -80319244 + MIR SINE MIR 58 234 -28 251 223 62 62 chr11 68464292 68464357 -80319115 - L1ME4a LINE L1 -3 6101 6037 1544 168 20 59 chr11 68464357 68464660 -80318812 - AluJo SINE Alu -21 291 1 251 223 62 62 chr11 68464660 68464724 -80318748 - L1ME4a LINE L1 -66 6038 5972 657 222 191 0 chr11 68464749 68464943 -80318529 + MIR SINE MIR 9 239 -23 859 206 0 26 chr11 68465136 68465325 -80318147 + AluJb SINE Alu 129 312 0 993 224 87 99 chr11 68465828 68465951 -80317521 + MLT1C LTR MaLR 48 171 -296 2356 91 13 0 chr11 68465951 68466259 -80317213 - AluSx SINE Alu 0 312 1 993 224 87 99 chr11 68466259 68466560 -80316912 + MLT1C LTR MaLR 171 467 0 2061 141 0 7 chr11 68466904 68467210 -80316262 + AluSx SINE Alu 1 304 -8 21 0 0 0 chr11 68468272 68468293 -80315179 + AT_rich Low_complexity Low_complexity 1 21 0 686 126 0 11 chr11 68468303 68468398 -80315074 + FLAM_A SINE Alu 23 116 -26 236 88 70 0 chr11 68468400 68468457 -80315015 + (TA)n Simple_repeat Simple_repeat 1 61 0 1012 124 0 0 chr11 68468457 68468586 -80314886 - FLAM_C SINE Alu -4 129 1 1404 286 85 28 chr11 68468934 68469547 -80313925 + L2 LINE L2 1842 2489 -825 490 153 0 14 chr11 68469598 68469670 -80313802 - FLAM_A SINE Alu -26 116 46 536 345 112 10 chr11 68469675 68469975 -80313497 + L2 LINE L2 2501 2850 -464 2236 113 3 0 chr11 68469975 68470284 -80313188 - AluSx SINE Alu -2 310 1 536 345 112 10 chr11 68470284 68470366 -80313106 + L2 LINE L2 2850 2922 -392 237 291 70 0 chr11 68470498 68470584 -80312888 - L1ME4a LINE L1 -335 5812 5721 511 222 82 7 chr11 68470624 68470759 -80312713 - MIR SINE MIR -25 237 93 1200 238 91 18 chr11 68470774 68471115 -80312357 - L1ME4a LINE L1 -525 5620 5255 862 127 57 44 chr11 68471171 68471329 -80312143 - FRAM SINE Alu -9 167 8 695 295 158 11 chr11 68471333 68471790 -80311682 - L1ME4a LINE L1 -932 5197 4674 1337 169 40 28 chr11 68471790 68472039 -80311433 - AluJb SINE Alu -60 252 1 381 231 77 21 chr11 68472045 68472188 -80311284 - L1ME4a LINE L1 -1489 4640 4490 325 239 54 22 chr11 68472275 68472367 -80311105 + MIR SINE MIR 1 95 -167 458 181 103 26 chr11 68472374 68472490 -80310982 + MIR SINE MIR 47 171 -91 1627 265 67 82 chr11 68472529 68472590 -80310882 - L1ME4a LINE L1 -1710 4419 4359 243 0 0 0 chr11 68472590 68472617 -80310855 + (TG)n Simple_repeat Simple_repeat 2 28 0 1627 265 67 82 chr11 68472617 68473243 -80310229 - L1ME4a LINE L1 -1770 4359 3753 2152 90 0 61 chr11 68473243 68473554 -80309918 - AluSg SINE Alu -18 292 1 1627 265 67 82 chr11 68473554 68473993 -80309479 - L1ME4a LINE L1 -2376 3753 3309 888 251 164 64 chr11 68474062 68474499 -80308973 - L1MEd LINE L1 -2980 3149 2757 1399 166 122 19 chr11 68474499 68474770 -80308702 + AluJb SINE Alu 5 303 -9 888 251 164 64 chr11 68474770 68475324 -80308148 - L1MEd LINE L1 -3372 2757 2061 2482 39 0 0 chr11 68475410 68475718 -80307754 - AluY SINE Alu 0 308 1 1909 214 65 7 chr11 68476082 68476541 -80306931 + MLT1F LTR MaLR 1 486 -56 2360 69 24 0 chr11 68476542 68476832 -80306640 + AluSc SINE Alu 1 297 -12 917 163 0 0 chr11 68476931 68477072 -80306400 - FLAM_C SINE Alu -2 141 1 429 220 53 27 chr11 68477072 68477222 -80306250 - L1MEd LINE L1 -4597 1532 1379 2987 172 88 86 chr11 68477231 68477265 -80306207 + L1MB8 LINE L1 5254 5286 -892 2295 94 0 7 chr11 68477265 68477563 -80305909 + AluSx SINE Alu 1 296 -16 2987 172 88 86 chr11 68477563 68477610 -80305862 + L1MB8 LINE L1 5286 5331 -847 2243 100 7 0 chr11 68477610 68477901 -80305571 + AluSx SINE Alu 1 293 -19 2987 172 88 86 chr11 68477901 68478707 -80304765 + L1MB8 LINE L1 5331 6146 -32 2105 119 0 35 chr11 68478707 68479019 -80304453 + AluSx SINE Alu 1 301 -11 2987 172 88 86 chr11 68479019 68479032 -80304440 + L1MB8 LINE L1 6146 6157 -21 230 0 0 32 chr11 68479055 68479086 -80304386 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 300 283 65 44 chr11 68479112 68479457 -80304015 - L1MEd LINE L1 -4869 1250 996 407 378 41 31 chr11 68479599 68479893 -80303579 + L2 LINE L2 2409 2705 -609 1268 174 41 12 chr11 68479924 68480166 -80303306 - L1PA16 LINE L1 -9 6157 5909 2172 130 0 0 chr11 68480254 68480553 -80302919 - AluSq SINE Alu -14 299 1 317 291 146 75 chr11 68480599 68480867 -80302605 + L2 LINE L2 2922 3208 -64 1659 95 9 0 chr11 68481109 68481330 -80302142 - AluSp SINE Alu -90 223 1 1116 188 5 14 chr11 68481445 68481668 -80301804 - AluJo SINE Alu -6 306 86 310 230 119 55 chr11 68481982 68482368 -80301104 - L1ME3 LINE L1 -81 6081 5683 1507 183 76 42 chr11 68482368 68482800 -80300672 - Charlie1b DNA MER1_type -76 447 1 574 298 46 7 chr11 68482884 68483146 -80300326 - L1P3 LINE L1 -609 5545 5272 421 145 29 0 chr11 68483246 68483315 -80300157 - AluS SINE Alu -240 72 2 207 209 47 0 chr11 68483466 68483509 -80299963 + MIR SINE MIR 107 151 -111 2090 123 33 0 chr11 68483679 68483980 -80299492 - AluSx SINE Alu 0 312 2 400 164 14 0 chr11 68484015 68484088 -80299384 + AluS SINE Alu 223 296 -13 300 258 36 174 chr11 68484105 68484191 -80299281 - L1 LINE L1 -1883 4263 4167 2245 116 0 0 chr11 68484191 68484492 -80298980 - AluSc SINE Alu -8 301 1 300 258 36 174 chr11 68484492 68484512 -80298960 - L1 LINE L1 -1979 4167 4146 1899 161 0 0 chr11 68484512 68484798 -80298674 - AluJb SINE Alu -26 286 1 300 258 36 174 chr11 68484798 68485047 -80298425 - L1 LINE L1 -2000 4146 3987 2235 111 0 7 chr11 68485047 68485353 -80298119 - AluSx SINE Alu -8 304 1 300 258 36 174 chr11 68485353 68485471 -80298001 - L1 LINE L1 -2159 3987 3854 185 260 143 26 chr11 68485776 68485853 -80297619 - MIR SINE MIR -11 251 166 1452 159 12 90 chr11 68486309 68486630 -80296842 - AluJo SINE Alu -16 296 1 1878 153 7 0 chr11 68486689 68486997 -80296475 + AluJb SINE Alu 1 310 0 299 297 54 21 chr11 68487269 68487420 -80296052 - MIR3 SINE MIR -60 148 9 2292 158 51 9 chr11 68487431 68487862 -80295610 - MER66A LTR ERV1 -3 475 27 1350 97 0 6 chr11 68488001 68488177 -80295295 + AluSg/x SINE Alu 131 305 -5 303 326 68 48 chr11 68488552 68488699 -80294773 + L2 LINE L2 3103 3252 -20 1726 157 13 49 chr11 68489823 68490129 -80293343 + AluJo SINE Alu 1 295 -17 568 246 60 86 chr11 68490175 68490508 -80292964 + L2 LINE L2 2879 3269 -44 641 254 94 8 chr11 68490717 68491034 -80292438 - L1ME3 LINE L1 -131 6031 5673 * 6168 125 26 22 chr11 68491022 68492148 -80291324 - L1MA5A LINE L1 0 6297 5159 615 233 62 79 chr11 68492143 68492383 -80291089 - L1ME3 LINE L1 -459 5705 5470 * 418 290 121 34 chr11 68492789 68492996 -80290476 + MIR SINE MIR 28 252 -10 2556 160 38 16 chr11 68493660 68494111 -80289361 + MER65C LTR ERV1 1 461 0 1096 169 165 4 chr11 68494260 68494519 -80288953 - AluSx SINE Alu 0 308 12 2331 175 41 30 chr11 68494810 68495301 -80288171 - MLT1D LTR MaLR -9 496 1 260 169 16 37 chr11 68495310 68495372 -80288100 + MIR SINE MIR 52 113 -95 2208 110 3 0 chr11 68495584 68495883 -80287589 + AluSx SINE Alu 1 300 -12 332 309 231 12 chr11 68496031 68496364 -80287108 - L2 LINE L2 -5 3267 2862 639 149 70 9 chr11 68497040 68497154 -80286318 + FLAM_A SINE Alu 1 121 -12 2514 57 0 3 chr11 68497805 68498106 -80285366 - AluY SINE Alu -11 300 1 2074 114 38 0 chr11 68498785 68499075 -80284397 + AluSx SINE Alu 1 301 -11 669 177 0 9 chr11 68499557 68499670 -80283802 - L2 LINE L2 0 3313 3202 3558 201 63 47 chr11 68499676 68499925 -80283547 + Charlie1a DNA MER1_type 1 245 -2516 815 197 34 0 chr11 68499925 68500072 -80283400 + FRAM SINE Alu 1 152 -14 3558 201 63 47 chr11 68500072 68500457 -80283015 + Charlie1a DNA MER1_type 245 655 -2106 2042 120 42 0 chr11 68500457 68500740 -80282732 - AluSx SINE Alu -17 295 1 3558 201 63 47 chr11 68500740 68500982 -80282490 + Charlie1a DNA MER1_type 655 892 -563 1077 179 42 0 chr11 68500990 68501202 -80282270 - L1MD3 LINE L1 -10 7985 7765 2049 151 28 90 chr11 68501205 68501354 -80282118 + Charlie1a DNA MER1_type 887 1044 -1717 1934 177 7 0 chr11 68501354 68501664 -80281808 + AluJo SINE Alu 1 312 0 2049 151 28 90 chr11 68501664 68501865 -80281607 + Charlie1a DNA MER1_type 1044 1195 -1566 3294 163 51 25 chr11 68501865 68501925 -80281547 + L1MB7 LINE L1 5525 5582 -602 862 141 16 0 chr11 68501925 68502053 -80281419 - FLAM_C SINE Alu -1 132 3 3294 163 51 25 chr11 68502053 68502635 -80280837 + L1MB7 LINE L1 5582 6184 0 2049 151 28 90 chr11 68502635 68502814 -80280658 + Charlie1a DNA MER1_type 1195 1384 -71 305 161 129 0 chr11 68502814 68502876 -80280596 + Charlie1a DNA MER1_type 1355 1424 -31 2508 67 0 0 chr11 68502876 68503173 -80280299 + AluY SINE Alu 1 297 -14 14486 150 48 61 chr11 68503179 68503580 -80279892 + L1MA3 LINE L1 3245 3650 -4074 2262 113 0 3 chr11 68503580 68503890 -80279582 + AluSg SINE Alu 1 309 -1 14486 150 48 61 chr11 68503890 68503911 -80279561 + L1MA3 LINE L1 3650 3670 -4054 1750 192 0 3 chr11 68503911 68504213 -80279259 + AluJo SINE Alu 1 301 -11 14486 150 48 61 chr11 68504213 68504783 -80278689 + L1MA3 LINE L1 3670 4246 -3478 2090 119 0 3 chr11 68504783 68505076 -80278396 + AluSc SINE Alu 1 292 -17 14486 150 48 61 chr11 68505076 68505501 -80277971 + L1MA3 LINE L1 4246 4675 -3049 2106 127 13 0 chr11 68505501 68505800 -80277672 - AluSq SINE Alu -10 303 1 14486 150 48 61 chr11 68505800 68506451 -80277021 + L1MA3 LINE L1 4675 5333 -2391 922 165 0 0 chr11 68506451 68506584 -80276888 + FLAM_C SINE Alu 1 133 0 180 0 0 0 chr11 68506594 68506614 -80276858 + (TA)n Simple_repeat Simple_repeat 2 21 0 14486 150 48 61 chr11 68506614 68507902 -80275570 + L1MA3 LINE L1 5342 6656 -1068 418 127 48 0 chr11 68507902 68507965 -80275507 + AluJ/FLAM SINE Alu 2 67 -245 14486 150 48 61 chr11 68507965 68508329 -80275143 + L1MA3 LINE L1 6656 7023 -701 2218 102 105 0 chr11 68508332 68508685 -80274787 + L1MA3 LINE L1 7110 7499 -225 836 153 0 0 chr11 68508685 68508803 -80274669 + AluJb SINE Alu 1 118 -194 2333 98 0 0 chr11 68508815 68509110 -80274362 - AluSq SINE Alu -18 295 1 30 0 0 0 chr11 68509115 68509145 -80274327 + AT_rich Low_complexity Low_complexity 1 30 0 1492 122 26 0 chr11 68509151 68509380 -80274092 + L1MA3 LINE L1 7486 7720 -4 856 158 0 8 chr11 68509485 68509618 -80273854 - FLAM_C SINE Alu 0 133 2 2033 133 3 3 chr11 68509691 68509991 -80273481 + AluSx SINE Alu 1 300 -12 25 0 0 0 chr11 68510002 68510027 -80273445 + AT_rich Low_complexity Low_complexity 1 25 0 275 160 40 0 chr11 68510152 68510202 -80273270 + L1MEd LINE L1 562 613 -5506 180 77 0 0 chr11 68510273 68510299 -80273173 + (GGCTG)n Simple_repeat Simple_repeat 1 26 0 495 227 53 8 chr11 68510548 68510680 -80272792 - L2 LINE L2 -251 3062 2925 890 254 94 3 chr11 68510762 68511010 -80272462 - L1MC5 LINE L1 -45 7916 7637 2117 136 0 0 chr11 68511010 68511304 -80272168 + AluSx SINE Alu 1 294 -18 890 254 94 3 chr11 68511304 68511343 -80272129 - L1MC5 LINE L1 -324 7637 7603 458 176 0 0 chr11 68511515 68511589 -80271883 - AluS SINE Alu -10 300 227 192 40 0 0 chr11 68511589 68511614 -80271858 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 1750 161 18 0 chr11 68511614 68511888 -80271584 - AluSx SINE Alu -31 281 3 824 169 8 0 chr11 68512169 68512299 -80271173 + FLAM_C SINE Alu 5 135 -8 812 132 44 66 chr11 68512367 68512547 -80270925 + FLAM_C SINE Alu 1 177 0 270 293 17 17 chr11 68512661 68512777 -80270695 - L1ME LINE L1 -575 5587 5472 289 286 48 34 chr11 68512952 68513099 -80270373 - L2 LINE L2 -213 3059 2911 334 119 51 0 chr11 68513099 68513158 -80270314 + AluS SINE Alu 41 102 -200 2064 104 28 7 chr11 68513457 68513746 -80269726 + AluSx SINE Alu 1 295 -17 1912 138 0 31 chr11 68513846 68514166 -80269306 - AluJo SINE Alu -2 310 1 4435 238 66 50 chr11 68515322 68515948 -80267524 - L1MC4 LINE L1 -15 8027 7412 2119 112 0 16 chr11 68515948 68516260 -80267212 - AluSc SINE Alu -2 307 1 961 119 0 8 chr11 68516266 68516400 -80267072 - FLAM_C SINE Alu 0 133 1 4435 238 66 50 chr11 68516400 68516675 -80266797 - L1MC4 LINE L1 -634 7408 7139 2031 131 3 10 chr11 68516675 68516980 -80266492 - AluSx SINE Alu -9 303 1 4435 238 66 50 chr11 68516980 68517577 -80265895 - L1MC4 LINE L1 -903 7139 6497 2451 56 0 0 chr11 68517580 68517865 -80265607 + AluY SINE Alu 1 285 -26 355 370 46 34 chr11 68517967 68518229 -80265243 - L2 LINE L2 -641 2673 2409 300 283 65 44 chr11 68518371 68518716 -80264756 + L1MEd LINE L1 996 1387 -4869 230 0 0 32 chr11 68518742 68518773 -80264699 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2061 125 0 36 chr11 68518809 68519121 -80264351 - AluSx SINE Alu -11 301 8 2206 117 3 0 chr11 68519829 68520127 -80263345 - AluSp SINE Alu -14 299 1 399 280 21 35 chr11 68520319 68520462 -80263010 - L2 LINE L2 -2 3311 3171 1061 203 0 47 chr11 68520653 68520885 -80262587 - MER58A DNA MER1_type 0 224 4 961 241 17 60 chr11 68521138 68521455 -80262017 + L1MC5 LINE L1 7607 7909 -52 2256 111 0 10 chr11 68521455 68521753 -80261719 + AluSg SINE Alu 1 295 -15 961 241 17 60 chr11 68521753 68521784 -80261688 + L1MC5 LINE L1 7909 7940 -21 559 277 62 11 chr11 68523010 68523187 -80260285 + MER58C DNA MER1_type 30 215 0 2211 126 7 0 chr11 68523380 68523682 -80259790 + AluJb SINE Alu 1 304 -8 510 271 8 17 chr11 68524265 68524430 -80259042 - L1ME3A LINE L1 -1 6163 6006 2482 62 14 0 chr11 68524956 68525248 -80258224 + AluSp SINE Alu 1 296 -17 225 0 0 0 chr11 68525398 68525423 -80258049 + (A)n Simple_repeat Simple_repeat 1 25 0 198 0 0 0 chr11 68525423 68525445 -80258027 + (TA)n Simple_repeat Simple_repeat 2 23 0 6626 144 15 33 chr11 68525448 68526737 -80256735 + L1MA3 LINE L1 3913 5235 -1070 394 125 47 0 chr11 68526737 68526801 -80256671 + AluJ/FLAM SINE Alu 1 67 -235 6626 144 15 33 chr11 68526801 68527165 -80256307 + L1MA3 LINE L1 5235 5604 -701 2064 106 86 0 chr11 68527173 68527521 -80255951 + L1MA3 LINE L1 5703 6080 -225 858 153 0 0 chr11 68527521 68527639 -80255833 + AluJb SINE Alu 1 118 -194 2359 105 0 0 chr11 68527651 68527946 -80255526 - AluSq SINE Alu -18 295 1 2361 89 0 0 chr11 68527984 68528275 -80255197 - AluY SINE Alu -20 291 1 819 123 112 24 chr11 68528276 68528446 -80255026 + Tigger1 DNA MER2_type 2226 2410 -8 290 307 55 24 chr11 68528669 68528796 -80254676 - L2 LINE L2 -261 3052 2922 * 395 140 30 80 chr11 68528782 68528882 -80254590 + MIR SINE MIR 86 180 -82 778 290 53 3 chr11 68529177 68529460 -80254012 - MLT1L LTR MaLR -4 611 315 470 153 22 62 chr11 68529463 68529570 -80253902 - L1P4 LINE L1 -386 5775 5677 1073 103 0 0 chr11 68529584 68529740 -80253732 + L1PB1 LINE L1 5928 6083 -68 1861 181 0 7 chr11 68530212 68530515 -80252957 + AluSx SINE Alu 1 301 -11 317 314 50 0 chr11 68532319 68532440 -80251032 + L1MC5 LINE L1 7253 7379 -582 243 0 0 0 chr11 68532555 68532582 -80250890 + (A)n Simple_repeat Simple_repeat 1 27 0 2277 105 0 3 chr11 68532593 68532897 -80250575 - AluSp SINE Alu -10 303 1 344 113 0 0 chr11 68532899 68532952 -80250520 - Alu SINE Alu -8 294 242 188 175 25 0 chr11 68533330 68533370 -80250102 + MIR SINE MIR 97 137 -125 2241 112 7 0 chr11 68533418 68533714 -80249758 + AluSx SINE Alu 1 298 -14 331 254 112 34 chr11 68533780 68533940 -80249532 + MIR SINE MIR 34 203 -59 698 105 57 0 chr11 68535013 68535137 -80248335 + L1MA9 LINE L1 6179 6309 -3 2096 129 3 14 chr11 68535384 68535679 -80247793 + AluSx SINE Alu 1 292 -20 1177 145 18 27 chr11 68535853 68536074 -80247398 + MER20 DNA MER1_type 1 219 0 225 139 23 0 chr11 68537565 68537608 -80245864 - L2 LINE L2 -8 3264 3221 185 280 13 27 chr11 68537653 68537728 -80245744 - L2 LINE L2 -207 3065 2992 336 306 9 18 chr11 68537982 68538093 -80245379 + L2 LINE L2 2640 2749 -565 836 283 67 17 chr11 68538095 68538392 -80245080 + L1ME3 LINE L1 5848 6159 -3 751 173 8 8 chr11 68538591 68538724 -80244748 + AluJo SINE Alu 1 133 -169 1685 147 15 11 chr11 68538857 68539130 -80244342 + MER1B DNA MER1_type 66 339 0 1980 210 41 9 chr11 68539130 68539614 -80243858 - L1MB3 LINE L1 -302 5819 5354 1495 156 38 7 chr11 68539621 68539910 -80243562 - L1MC1 LINE L1 -6 6327 6030 180 0 0 0 chr11 68540023 68540043 -80243429 + (A)n Simple_repeat Simple_repeat 1 20 0 880 171 63 13 chr11 68540047 68540205 -80243267 + AluJo SINE Alu 124 289 -23 2182 42 76 0 chr11 68540227 68540531 -80242941 + AluY SINE Alu 1 324 0 1566 110 4 65 chr11 68540535 68540780 -80242692 + AluSp SINE Alu 67 296 -17 270 0 0 0 chr11 68540943 68540973 -80242499 + (A)n Simple_repeat Simple_repeat 1 30 0 267 283 75 19 chr11 68543216 68543322 -80240150 + MIR SINE MIR 30 141 -67 1676 147 23 8 chr11 68545442 68545707 -80237765 + AluJo SINE Alu 43 311 -1 702 206 106 5 chr11 68546838 68547037 -80236435 + MER20 DNA MER1_type 1 219 0 1989 136 0 44 chr11 68547561 68547735 -80235737 - AluSx SINE Alu -5 307 152 2448 70 0 0 chr11 68547735 68548022 -80235450 - AluSc SINE Alu -21 288 2 1989 136 0 44 chr11 68548022 68548164 -80235308 - AluSx SINE Alu -160 152 5 1108 116 0 0 chr11 68549283 68549471 -80234001 - AluSg/x SINE Alu 0 322 135 1067 124 33 0 chr11 68550182 68550335 -80233137 + FRAM SINE Alu 1 157 -19 193 316 133 38 chr11 68550522 68550680 -80232792 + MIR SINE MIR 20 192 -70 484 153 0 12 chr11 68550701 68550786 -80232686 + FLAM_A SINE Alu 21 104 -38 251 114 23 0 chr11 68551879 68551923 -80231549 + (TG)n Simple_repeat Simple_repeat 1 45 0 433 298 30 24 chr11 68553422 68553590 -80229882 - MIR3 SINE MIR -14 194 26 234 192 0 68 chr11 68554244 68554317 -80229155 + C-rich Low_complexity Low_complexity 5 72 0 2090 123 0 27 chr11 68556105 68556242 -80227230 + AluSx SINE Alu 1 140 -172 2458 81 0 3 chr11 68556242 68556537 -80226935 + AluSc SINE Alu 1 294 -15 2090 123 0 27 chr11 68556537 68556700 -80226772 + AluSx SINE Alu 140 293 -19 875 284 322 6 chr11 68557212 68558611 -80224861 + L2 LINE L2 1463 3312 -1 2196 203 87 50 chr11 68558964 68559146 -80224326 - L1MC3 LINE L1 0 7785 7611 2202 116 10 0 chr11 68559146 68559440 -80224032 + AluSx SINE Alu 1 297 -15 2196 203 87 50 chr11 68559440 68559537 -80223935 - L1MC3 LINE L1 -174 7611 7519 1146 196 143 8 chr11 68559537 68559707 -80223765 - AluJo SINE Alu 0 302 156 203 61 30 0 chr11 68559707 68559740 -80223732 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 1146 196 143 8 chr11 68559740 68559835 -80223637 - AluJo SINE Alu -146 156 1 2196 203 87 50 chr11 68559835 68560190 -80223282 - L1MC3 LINE L1 -266 7519 7127 293 354 20 34 chr11 68560315 68560462 -80223010 - MIR SINE MIR -7 255 111 * 326 286 202 8 chr11 68560453 68560691 -80222781 + L2 LINE L2 2250 2533 -781 349 384 98 16 chr11 68560912 68561167 -80222305 + L2 LINE L2 2997 3272 0 1090 58 0 0 chr11 68562033 68562170 -80221302 + AluY SINE Alu 172 308 -3 196 224 0 60 chr11 68562505 68562572 -80220900 + L2 LINE L2 2233 2295 -1019 2245 99 10 0 chr11 68562661 68562954 -80220518 - AluSq SINE Alu -17 296 1 276 337 68 25 chr11 68562967 68563130 -80220342 - MIR SINE MIR -71 191 22 332 43 0 0 chr11 68563398 68563445 -80220027 - AluSx SINE Alu 0 302 256 1717 98 0 5 chr11 68563445 68563660 -80219812 - AluSx SINE Alu -98 214 1 1889 112 105 0 chr11 68564360 68564636 -80218836 + AluSx SINE Alu 1 305 -7 238 237 0 34 chr11 68564662 68564721 -80218751 + MIR SINE MIR 104 160 -102 2049 119 13 10 chr11 68564775 68565077 -80218395 + AluJo SINE Alu 1 303 -9 1620 124 48 12 chr11 68565080 68565329 -80218143 + AluSg SINE Alu 35 292 -18 1823 152 7 17 chr11 68565592 68565881 -80217591 - AluJb SINE Alu -26 286 1 2427 104 0 0 chr11 68566150 68566458 -80217014 - AluSx SINE Alu -4 308 1 1134 165 52 120 chr11 68566518 68566742 -80216730 + AluJo SINE Alu 3 202 -100 1740 110 32 4 chr11 68566742 68566988 -80216484 + AluSx SINE Alu 43 295 -17 1134 165 52 120 chr11 68566988 68567072 -80216400 + AluJo SINE Alu 202 290 -12 628 300 134 32 chr11 68567266 68567639 -80215833 + L3 LINE CR1 1085 1495 -82 192 350 93 0 chr11 68567694 68567791 -80215681 + MIR SINE MIR 145 250 -12 26 50 0 0 chr11 68568391 68568431 -80215041 + GC_rich Low_complexity Low_complexity 1 40 0 1199 292 179 15 chr11 68569532 68570418 -80213054 - L2 LINE L2 0 3313 2269 194 299 126 11 chr11 68570436 68570523 -80212949 + MIR SINE MIR 54 150 -112 1375 191 69 43 chr11 68570885 68570992 -80212480 + AluJb SINE Alu 1 104 -208 2228 102 7 0 chr11 68570992 68571287 -80212185 - AluSg SINE Alu -13 297 1 1375 191 69 43 chr11 68571287 68571483 -80211989 + AluJb SINE Alu 104 312 0 226 259 65 28 chr11 68572754 68572862 -80210610 + MIR3 SINE MIR 9 120 -88 248 308 55 0 chr11 68572942 68573033 -80210439 - MIR SINE MIR -117 145 50 298 241 103 52 chr11 68573039 68573155 -80210317 - MIR SINE MIR -93 169 48 202 268 18 0 chr11 68574633 68574689 -80208783 + GA-rich Low_complexity Low_complexity 2 58 0 240 340 179 9 chr11 68575045 68575257 -80208215 + L2 LINE L2 2956 3203 -69 201 200 44 0 chr11 68575628 68575673 -80207799 + (CGGGG)n Simple_repeat Simple_repeat 2 48 0 209 289 62 41 chr11 68575712 68575809 -80207663 + L2 LINE L2 2994 3092 -180 2032 119 0 32 chr11 68580309 68580621 -80202851 + AluJb SINE Alu 1 302 -10 262 341 104 11 chr11 68580649 68580831 -80202641 + MIR SINE MIR 32 230 -32 281 375 40 23 chr11 68580934 68581110 -80202362 - L2 LINE L2 -96 3176 2998 390 328 152 25 chr11 68581119 68581317 -80202155 - MIR SINE MIR -1 261 39 225 337 60 0 chr11 68582520 68582603 -80200869 - L2 LINE L2 -224 3048 2961 36 0 0 0 chr11 68582887 68582923 -80200549 + GC_rich Low_complexity Low_complexity 1 36 0 394 358 90 30 chr11 68584320 68584686 -80198786 + L2 LINE L2 2872 3259 -13 251 169 31 0 chr11 68585047 68585112 -80198360 + CT-rich Low_complexity Low_complexity 3 69 0 1515 193 10 17 chr11 68585125 68585425 -80198047 - AluJb SINE Alu -3 309 12 230 175 0 15 chr11 68585427 68585479 -80197993 - MIR SINE MIR -52 156 108 186 213 150 62 chr11 68585706 68585786 -80197686 - MIR3 SINE MIR -36 172 86 520 323 77 9 chr11 68586701 68586921 -80196551 + MIR SINE MIR 28 262 0 1854 173 0 0 chr11 68586924 68587231 -80196241 - AluJo SINE Alu -5 307 1 309 26 0 0 chr11 68587286 68587324 -80196148 + (TTG)n Simple_repeat Simple_repeat 3 40 0 2203 106 0 0 chr11 68587342 68587644 -80195828 + AluSc SINE Alu 1 302 -7 524 237 0 26 chr11 68587644 68587758 -80195714 - FLAM_A SINE Alu -31 111 1 1674 163 0 53 chr11 68588108 68588250 -80195222 + AluJb SINE Alu 1 149 -163 2468 74 0 0 chr11 68588250 68588559 -80194913 + AluSq SINE Alu 1 309 -4 1674 163 0 53 chr11 68588559 68588736 -80194736 + AluJb SINE Alu 149 303 -9 281 256 25 13 chr11 68590104 68590193 -80193279 - MIR SINE MIR -63 145 59 266 290 91 44 chr11 68590751 68590951 -80192521 - MIR3 SINE MIR -52 210 4 944 184 0 12 chr11 68591012 68591180 -80192292 - FRAM SINE Alu -7 169 4 486 281 110 6 chr11 68591373 68591537 -80191935 - MIR SINE MIR -62 200 20 2685 113 39 81 chr11 68591845 68592191 -80191281 + Tigger1 DNA MER2_type 1900 2259 -159 2266 93 0 22 chr11 68592191 68592504 -80190968 - AluSx SINE Alu -6 306 1 2685 113 39 81 chr11 68592504 68592596 -80190876 + Tigger1 DNA MER2_type 2259 2313 -105 2040 76 58 0 chr11 68592596 68592873 -80190599 - AluSq SINE Alu -20 293 1 2685 113 39 81 chr11 68592873 68592974 -80190498 + Tigger1 DNA MER2_type 2313 2417 -1 2132 218 26 38 chr11 68592977 68593230 -80190242 - L1M4 LINE L1 -2828 3816 3562 2093 101 0 18 chr11 68593230 68593538 -80189934 - AluSc SINE Alu 0 303 1 2132 218 26 38 chr11 68593538 68593970 -80189502 - L1M4 LINE L1 -3082 3562 3138 317 113 0 0 chr11 68593968 68594021 -80189451 - L1M4 LINE L1 -3885 2761 2709 * 1674 191 0 7 chr11 68594022 68594320 -80189152 - AluJb SINE Alu -7 305 10 2059 96 4 0 chr11 68594337 68594607 -80188865 - AluSp SINE Alu -16 297 27 2397 55 3 13 chr11 68594607 68594916 -80188556 + AluY SINE Alu 1 306 -5 281 51 0 0 chr11 68594918 68594957 -80188515 - AluSp SINE Alu -261 39 1 805 139 41 8 chr11 68594989 68595111 -80188361 + FLAM_C SINE Alu 2 127 -6 599 141 27 82 chr11 68595113 68595186 -80188286 - L1M4 LINE L1 -3940 2706 2631 2100 135 0 0 chr11 68595186 68595482 -80187990 + AluSx SINE Alu 1 296 -16 599 141 27 82 chr11 68595482 68595576 -80187896 - L1M4 LINE L1 -4015 2631 2547 1578 194 47 0 chr11 68595576 68595736 -80187736 - AluJo SINE Alu -18 294 114 194 0 0 37 chr11 68595736 68595763 -80187709 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1578 194 47 0 chr11 68595763 68595881 -80187591 - AluJo SINE Alu -198 114 3 599 141 27 82 chr11 68595881 68595896 -80187576 - L1M4 LINE L1 -4099 2547 2533 * 941 317 78 36 chr11 68595882 68596525 -80186947 - L1M4 LINE L1 -5869 673 4 187 300 14 43 chr11 68596532 68596602 -80186870 + MIR SINE MIR 101 168 -94 2009 117 20 10 chr11 68596633 68596931 -80186541 + AluSx SINE Alu 1 301 -11 2140 109 7 7 chr11 68597468 68597772 -80185700 - AluSx SINE Alu -8 304 1 2237 81 20 0 chr11 68598302 68598598 -80184874 - AluSp SINE Alu -11 302 1 222 314 35 0 chr11 68598807 68598893 -80184579 - MIR SINE MIR -167 95 7 206 345 11 0 chr11 68598956 68599043 -80184429 + L2 LINE L2 2583 2670 -644 * 415 338 131 22 chr11 68599022 68599297 -80184175 + L2 LINE L2 2968 3272 0 269 257 225 23 chr11 68600027 68600158 -80183314 + MIR3 SINE MIR 12 164 -61 360 264 76 7 chr11 68601015 68601159 -80182313 + MIR3 SINE MIR 55 208 0 324 244 23 12 chr11 68601298 68601384 -80182088 - MIR3 SINE MIR -15 193 107 249 57 0 0 chr11 68602474 68602509 -80180963 + (TG)n Simple_repeat Simple_repeat 2 36 0 197 156 0 22 chr11 68603194 68603239 -80180233 + (CA)n Simple_repeat Simple_repeat 1 44 0 1365 202 85 7 chr11 68604387 68604659 -80178813 - AluJo SINE Alu -9 293 1 438 296 38 0 chr11 68604677 68604809 -80178663 - MIR3 SINE MIR -63 145 9 959 191 0 78 chr11 68604821 68605052 -80178420 + MER58A DNA MER1_type 4 216 -8 316 257 15 12 chr11 68605545 68605643 -80177829 - MIR SINE MIR -90 118 19 241 257 211 46 chr11 68606353 68606505 -80176967 + L2 LINE L2 3072 3248 -24 391 346 85 48 chr11 68606514 68606913 -80176559 - L2 LINE L2 -2 3270 2857 355 280 66 88 chr11 68607097 68607493 -80175979 + L2 LINE L2 2827 3213 -59 226 320 70 8 chr11 68607528 68607656 -80175816 + L3 LINE CR1 1183 1318 -259 630 259 22 53 chr11 68607667 68607917 -80175555 + MIR SINE MIR 9 252 -10 235 385 60 0 chr11 68607940 68608057 -80175415 + L3 LINE CR1 1355 1478 -99 215 300 0 0 chr11 68608536 68608596 -80174876 - MIR SINE MIR -62 200 141 514 287 17 50 chr11 68609046 68609227 -80174245 + MIR3 SINE MIR 17 191 -17 190 241 81 58 chr11 68609791 68609878 -80173594 - MIR SINE MIR -83 125 37 269 288 68 61 chr11 68609930 68610093 -80173379 + MIR3 SINE MIR 17 180 -28 1826 84 0 132 chr11 68611113 68611446 -80172026 - AluSx SINE Alu -23 289 1 242 369 18 9 chr11 68611502 68611613 -80171859 + L2 LINE L2 3141 3252 -20 581 236 188 12 chr11 68611617 68611947 -80171525 - MER113 DNA MER1_type? -44 477 90 229 307 55 16 chr11 68612038 68612165 -80171307 - L2 LINE L2 -289 2983 2852 508 255 137 29 chr11 68612274 68612552 -80170920 - MER20B DNA MER1_type -37 746 439 2192 131 0 0 chr11 68612568 68612919 -80170553 - AluSx SINE Alu 0 351 1 2117 103 0 7 chr11 68612943 68613235 -80170237 - AluSg SINE Alu -20 290 1 2053 117 7 7 chr11 68613269 68613602 -80169870 - AluSq SINE Alu 0 333 1 602 210 0 0 chr11 68613606 68613749 -80169723 - L1MA4 LINE L1 0 6300 6158 664 238 5 10 chr11 68613749 68613942 -80169530 - MER20B DNA MER1_type -366 417 226 21 36 0 0 chr11 68613942 68613970 -80169502 + AT_rich Low_complexity Low_complexity 1 28 0 360 0 0 0 chr11 68614020 68614060 -80169412 + (ATG)n Simple_repeat Simple_repeat 2 41 0 2284 100 0 0 chr11 68614062 68614363 -80169109 - AluSq SINE Alu -12 301 1 2076 172 24 22 chr11 68614363 68614427 -80169045 - L1MC2 LINE L1 -456 5888 5826 2226 116 0 10 chr11 68614427 68614738 -80168734 - AluSq SINE Alu -3 310 3 2076 172 24 22 chr11 68614738 68615132 -80168340 - L1MC2 LINE L1 -518 5826 5429 2191 102 3 10 chr11 68615133 68615446 -80168026 - AluSx SINE Alu -1 311 1 2740 225 12 57 chr11 68615447 68615999 -80167473 - L1MC2 LINE L1 -869 5277 4701 2168 110 0 0 chr11 68615999 68616291 -80167181 - AluSg SINE Alu -18 292 1 2740 225 12 57 chr11 68616291 68616535 -80166937 - L1MC2 LINE L1 -1445 4701 4526 1587 193 7 0 chr11 68616535 68616859 -80166613 - AluJb SINE Alu 0 335 10 2740 225 12 57 chr11 68616859 68617005 -80166467 - L1MC2 LINE L1 -1620 4526 4375 1041 29 7 0 chr11 68617010 68617149 -80166323 + L1PA6 LINE L1 5690 5829 -325 2268 81 3 7 chr11 68617149 68617457 -80166015 + AluY SINE Alu 1 307 -4 571 150 20 34 chr11 68617603 68617632 -80165840 + GA-rich Low_complexity Low_complexity 2 30 -116 2066 98 29 23 chr11 68617632 68617938 -80165534 + AluY SINE Alu 3 310 -1 571 150 20 34 chr11 68617938 68618055 -80165417 + GA-rich Low_complexity Low_complexity 30 146 0 980 332 132 8 chr11 68618055 68618576 -80164896 - L2 LINE L2 -337 2977 2392 1988 107 44 13 chr11 68618577 68618875 -80164597 + AluSg SINE Alu 3 309 -1 2173 117 0 3 chr11 68618887 68619195 -80164277 - AluSq SINE Alu -6 307 1 1730 180 3 22 chr11 68619457 68619773 -80163699 + AluJo SINE Alu 3 312 0 687 157 8 0 chr11 68619652 68619773 -80163699 + AluJo/FRAM SINE Alu 191 346 0 223 118 0 0 chr11 68619773 68619807 -80163665 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1478 143 34 115 chr11 68619817 68619942 -80163530 + AluJo SINE Alu 6 140 -172 2001 162 13 0 chr11 68619942 68620250 -80163222 + AluSq SINE Alu 1 312 -1 1478 143 34 115 chr11 68620250 68620445 -80163027 + AluJo SINE Alu 140 300 -12 2182 114 3 28 chr11 68620445 68620762 -80162710 + AluSg SINE Alu 1 309 -1 2355 94 0 7 chr11 68620784 68621083 -80162389 + AluSx SINE Alu 1 297 -15 2383 78 3 13 chr11 68621128 68621435 -80162037 + AluY SINE Alu 1 304 -7 411 272 33 17 chr11 68621488 68621668 -80161804 + L1ME4a LINE L1 5901 6083 -38 198 182 0 0 chr11 68621681 68621714 -80161758 + L2 LINE L2 3222 3254 -18 240 262 71 36 chr11 68622095 68622179 -80161293 + MIR3 SINE MIR 13 99 -109 223 208 21 0 chr11 68622214 68622262 -80161210 + MIR SINE MIR 88 136 -72 2467 87 0 3 chr11 68624118 68624427 -80159045 + AluSq SINE Alu 1 308 -5 1852 121 51 18 chr11 68625306 68625599 -80157873 - AluSq SINE Alu 0 303 2 2251 128 3 0 chr11 68625861 68626166 -80157306 - AluSx SINE Alu -6 306 1 286 230 158 12 chr11 68626267 68626445 -80157027 - L1ME LINE L1 -699 5463 5270 242 283 115 0 chr11 68626448 68626561 -80156911 - LTR67 LTR ERVL 0 557 432 2077 133 99 8 chr11 68627151 68627543 -80155929 - MSTA LTR MaLR 0 428 1 948 212 9 33 chr11 68627689 68627865 -80155607 - MER20 DNA MER1_type -6 213 41 1732 121 95 17 chr11 68627865 68628213 -80155259 - THE1C LTR MaLR 0 375 1 948 212 9 33 chr11 68628213 68628248 -80155224 - MER20 DNA MER1_type -178 41 7 612 319 32 5 chr11 68628308 68628524 -80154948 - ERVL LTR ERVL -350 5414 5193 796 244 53 31 chr11 68628615 68628840 -80154632 - MIR SINE MIR -21 241 12 543 319 18 13 chr11 68629078 68629307 -80154165 - ERVL LTR ERVL -2123 3641 3412 1741 130 98 46 chr11 68629334 68629680 -80153792 - MLT1B LTR MaLR -26 364 1 1084 110 0 14 chr11 68629739 68629884 -80153588 + AluJb SINE Alu 3 145 -167 2248 109 3 10 chr11 68629884 68630186 -80153286 + AluSx SINE Alu 1 300 -12 616 218 42 0 chr11 68630186 68630328 -80153144 + L1M4 LINE L1 3968 4115 -2031 1071 158 0 0 chr11 68630331 68630483 -80152989 - AluJb SINE Alu -16 296 145 569 230 64 27 chr11 68630488 68630628 -80152844 + L1M4 LINE L1 4110 4261 -1885 2235 71 4 4 chr11 68630628 68630970 -80152502 + AluY SINE Alu 1 342 0 569 230 64 27 chr11 68630970 68631015 -80152457 + L1M4 LINE L1 4261 4303 -1843 857 125 0 22 chr11 68631016 68631174 -80152298 + FLAM_C SINE Alu 1 155 0 849 121 0 9 chr11 68631292 68631460 -80152012 + AluSg/x SINE Alu 180 346 0 1574 118 0 0 chr11 68632082 68632293 -80151179 - AluSp SINE Alu -102 211 1 406 233 15 118 chr11 68632781 68632910 -80150562 + LTR41 LTR ERVL 530 618 -155 1978 166 3 6 chr11 68632910 68633223 -80150249 - AluJb SINE Alu 0 312 1 406 233 15 118 chr11 68633223 68633364 -80150108 + LTR41 LTR ERVL 618 772 -1 1850 174 6 37 chr11 68633378 68633699 -80149773 - AluJo SINE Alu -1 311 1 2385 99 0 0 chr11 68633725 68634019 -80149453 + AluSx SINE Alu 1 294 -18 1956 142 7 10 chr11 68634173 68634468 -80149004 - AluJb SINE Alu -18 294 1 1657 191 52 9 chr11 68634642 68634988 -80148484 - MLT1A1 LTR MaLR 0 365 5 449 259 66 42 chr11 68635142 68635308 -80148164 - L1MEd LINE L1 -5711 408 239 808 119 0 0 chr11 68635386 68635495 -80147977 - AluSg/x SINE Alu -15 294 186 261 118 0 0 chr11 68635625 68635676 -80147796 + (TA)n Simple_repeat Simple_repeat 2 52 0 1682 146 3 37 chr11 68635723 68636046 -80147426 + AluSx SINE Alu 1 312 0 1106 265 41 46 chr11 68636046 68636484 -80146988 + MLT1H LTR MaLR 92 527 -22 207 238 50 50 chr11 68636808 68636909 -80146563 + L2 LINE L2 2351 2451 -863 2192 105 17 7 chr11 68636924 68637219 -80146253 - AluSg SINE Alu -10 300 3 458 300 113 17 chr11 68637220 68637460 -80146012 + L2 LINE L2 2392 2654 -660 2215 106 3 13 chr11 68637578 68637881 -80145591 - AluSx SINE Alu -12 300 1 662 130 0 168 chr11 68637899 68638018 -80145454 - AluJo SINE Alu -177 135 48 1803 92 149 0 chr11 68638018 68638279 -80145193 - AluSg1 SINE Alu -9 300 1 662 130 0 168 chr11 68638279 68638320 -80145152 - AluJo SINE Alu -264 48 2 225 308 62 0 chr11 68638779 68638844 -80144628 - L2 LINE L2 -53 3219 3151 196 169 70 84 chr11 68639379 68639450 -80144022 + MIR SINE MIR 34 103 -105 1840 138 28 3 chr11 68639749 68640031 -80143441 + AluJb SINE Alu 7 295 -17 311 322 14 68 chr11 68640167 68640313 -80143159 - MIR SINE MIR -98 164 27 225 162 0 0 chr11 68640333 68640370 -80143102 - MIR SINE MIR -59 149 113 364 306 176 5 chr11 68641147 68641346 -80142126 - MIR SINE MIR -14 248 16 201 201 0 70 chr11 68641972 68642048 -80141424 + MIR SINE MIR 93 145 -63 209 256 171 0 chr11 68642701 68642783 -80140689 + L2 LINE L2 3213 3308 -5 336 188 0 0 chr11 68642913 68642977 -80140495 - L2 LINE L2 0 3313 3250 198 291 161 62 chr11 68643098 68643521 -80139951 + L2 LINE L2 2804 3268 -4 240 239 42 14 chr11 68643585 68643656 -80139816 + L2 LINE L2 3235 3307 -6 981 32 32 8 chr11 68643656 68643780 -80139692 + AluY SINE Alu 1 127 -184 2501 61 0 0 chr11 68643933 68644226 -80139246 - AluY SINE Alu -18 293 1 2259 204 27 100 chr11 68644231 68644377 -80139095 + L1ME1 LINE L1 5029 5184 -982 2380 82 0 7 chr11 68644377 68644680 -80138792 + AluSg SINE Alu 1 301 -9 2259 204 27 100 chr11 68644680 68644853 -80138619 + L1ME1 LINE L1 5184 5368 -798 2273 119 3 3 chr11 68644853 68645165 -80138307 + AluSx SINE Alu 1 312 0 2259 204 27 100 chr11 68645165 68645278 -80138194 + L1ME1 LINE L1 5368 5488 -678 1069 142 0 0 chr11 68645278 68645440 -80138032 + U1 snRNA snRNA 3 164 -1 2259 204 27 100 chr11 68645440 68645452 -80138020 + L1ME1 LINE L1 5488 5499 -667 2334 104 0 19 chr11 68645452 68645768 -80137704 - AluSg SINE Alu 0 310 1 2259 204 27 100 chr11 68645768 68646168 -80137304 + L1ME1 LINE L1 5499 5926 -240 1986 152 7 0 chr11 68646168 68646465 -80137007 + AluSx SINE Alu 2 300 -12 2259 204 27 100 chr11 68646465 68646690 -80136782 + L1ME1 LINE L1 5926 6009 -157 1814 182 7 0 chr11 68646690 68646987 -80136485 + AluJo SINE Alu 1 299 -13 2259 204 27 100 chr11 68646987 68647092 -80136380 + L1ME1 LINE L1 6009 6120 -46 2225 75 0 41 chr11 68647129 68647421 -80136051 - AluSx SINE Alu -32 280 1 2285 86 7 26 chr11 68647812 68648115 -80135357 - AluSc SINE Alu -12 297 1 516 211 0 18 chr11 68648166 68648275 -80135197 + L1MC4a LINE L1 7203 7309 -499 1006 168 0 7 chr11 68648282 68648437 -80135035 + AluJb SINE Alu 138 291 -21 1481 138 9 5 chr11 68648578 68648796 -80134676 + AluJb SINE Alu 85 303 -9 3192 240 76 58 chr11 68648797 68649227 -80134245 + L1M4b LINE L1 289 710 -6149 1893 138 34 17 chr11 68649227 68649524 -80133948 + AluSx SINE Alu 5 306 -6 3192 240 76 58 chr11 68649524 68650104 -80133368 + L1M4b LINE L1 710 1317 -5542 350 183 0 0 chr11 68651139 68651199 -80132273 + MIR SINE MIR 85 144 -64 549 83 0 24 chr11 68651209 68651293 -80132179 + AluSg SINE Alu 2 83 -227 294 73 0 0 chr11 68651817 68651858 -80131614 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 183 340 43 21 chr11 68651874 68651968 -80131504 - L2 LINE L2 -36 3236 3141 244 303 59 38 chr11 68652218 68652397 -80131075 - MIR SINE MIR -63 145 16 1858 146 15 0 chr11 68652664 68652938 -80130534 + AluJb SINE Alu 1 278 -34 186 343 0 43 chr11 68652985 68653055 -80130417 + MIR SINE MIR 119 185 -77 181 190 52 52 chr11 68653413 68653471 -80130001 + L2 LINE L2 3206 3263 -9 306 73 0 0 chr11 68653476 68653517 -80129955 + (TTTC)n Simple_repeat Simple_repeat 2 42 0 496 136 74 0 chr11 68653527 68653608 -80129864 - AluJb SINE Alu -206 106 20 1111 184 97 22 chr11 68653779 68653808 -80129664 + L1MC3 LINE L1 7459 7484 -301 1846 168 17 0 chr11 68653808 68654099 -80129373 + AluJo SINE Alu 9 304 -8 1111 184 97 22 chr11 68654099 68654347 -80129125 + L1MC3 LINE L1 7484 7757 -28 2202 117 13 0 chr11 68654351 68654658 -80128814 + AluSx SINE Alu 1 311 -1 1446 225 40 0 chr11 68654836 68655183 -80128289 - L1M4 LINE L1 -1812 4334 3974 1747 117 0 26 chr11 68655312 68655602 -80127870 + AluSc SINE Alu 52 309 0 2210 69 0 28 chr11 68655974 68656265 -80127207 - AluY SINE Alu 0 311 29 2433 79 3 0 chr11 68656294 68656584 -80126888 - AluSp SINE Alu -22 291 1 1288 205 59 10 chr11 68656721 68656855 -80126617 + AluSq SINE Alu 1 127 -186 2578 61 0 6 chr11 68656855 68657166 -80126306 + AluY SINE Alu 1 309 -2 1288 205 59 10 chr11 68657166 68657319 -80126153 + AluSq SINE Alu 127 302 -11 204 103 52 17 chr11 68657374 68657432 -80126040 + A-rich Low_complexity Low_complexity 6 65 0 636 247 150 69 chr11 68657432 68657679 -80125793 - L1MC/D LINE L1 -2067 5741 5475 207 367 0 31 chr11 68662051 68662149 -80121323 + MIR SINE MIR 38 132 -76 317 254 80 51 chr11 68662305 68662443 -80121029 - MIR3 SINE MIR -32 176 35 2244 116 0 0 chr11 68663302 68663603 -80119869 - AluSg SINE Alu -9 301 1 239 192 0 0 chr11 68663870 68663922 -80119550 - MIR SINE MIR -71 137 86 499 283 90 33 chr11 68664066 68664366 -80119106 - L2 LINE L2 -1 3312 2996 875 143 0 0 chr11 68664372 68664505 -80118967 + FLAM_C SINE Alu 1 133 0 535 202 26 9 chr11 68664630 68664744 -80118728 - L1ME LINE L1 -619 5547 5432 2320 116 0 0 chr11 68664775 68665086 -80118386 + AluY SINE Alu 1 311 0 1360 83 6 11 chr11 68665087 68665267 -80118205 + AluSg/x SINE Alu 120 298 -14 1487 149 6 62 chr11 68665268 68665368 -80118104 + L1MD1 LINE L1 5819 5923 -319 2093 133 7 23 chr11 68665368 68665677 -80117795 - AluSx SINE Alu -8 304 1 1487 149 6 62 chr11 68665677 68665897 -80117575 + L1MD1 LINE L1 5923 6121 -121 2305 85 0 13 chr11 68665897 68666203 -80117269 - AluSg SINE Alu -8 302 1 403 40 0 0 chr11 68666203 68666253 -80117219 - AluY SINE Alu -250 50 1 * 404 103 19 50 chr11 68666253 68666351 -80117121 - AluS SINE Alu -228 75 1 722 93 76 0 chr11 68666352 68666470 -80117002 + L1MD1 LINE L1 6108 6234 -8 1667 93 5 0 chr11 68666471 68666685 -80116787 + AluSq SINE Alu 1 215 -98 1724 60 5 19 chr11 68666791 68667006 -80116466 + AluY SINE Alu 88 299 -12 987 170 9 31 chr11 68667015 68667238 -80116234 + L1MC3 LINE L1 6880 7097 -688 410 239 0 11 chr11 68667247 68667339 -80116133 + MLT1F1 LTR MaLR 35 125 -442 1929 98 42 21 chr11 68667356 68667641 -80115831 - AluSc SINE Alu -18 291 1 338 200 14 0 chr11 68667641 68667711 -80115761 + L1MC4a LINE L1 7234 7304 -504 1351 132 0 19 chr11 68667725 68667930 -80115542 + AluJ SINE Alu 1 201 -111 885 94 0 0 chr11 68668229 68668346 -80115126 + AluJo SINE Alu 2 118 -184 359 175 0 0 chr11 68668349 68668412 -80115060 + AluJo SINE Alu 186 248 -54 430 204 204 26 chr11 68668412 68668564 -80114908 + MIR SINE MIR 84 262 0 229 36 0 0 chr11 68668667 68668695 -80114777 + MER84 LTR ERVI 1 28 -479 467 63 203 13 chr11 68668704 68668783 -80114689 + MER84 LTR ERVI 1 94 -413 2219 96 12 3 chr11 68668784 68669108 -80114364 - pTR5 LTR ERV1 -2046 392 66 331 265 10 0 chr11 68669108 68669206 -80114266 - LTR30 LTR ERV1 -80 642 544 1042 81 110 23 chr11 68669210 68669383 -80114089 - pTR5 LTR ERV1 -417 2021 1834 2564 67 0 0 chr11 68669484 68669825 -80113647 + L1PA6 LINE L1 5814 6154 0 2545 56 0 7 chr11 68669937 68670240 -80113232 - AluY SINE Alu -10 301 1 2667 51 0 6 chr11 68670321 68670632 -80112840 + AluSp SINE Alu 1 309 -4 412 76 45 0 chr11 68670744 68670810 -80112662 - AluS SINE Alu -234 69 1 1921 173 3 10 chr11 68670936 68671250 -80112222 + AluJo SINE Alu 1 310 -2 1954 106 26 0 chr11 68671482 68671789 -80111683 + AluSx SINE Alu 2 315 0 2339 68 0 0 chr11 68671905 68672198 -80111274 - AluY SINE Alu -18 293 1 459 229 17 8 chr11 68672198 68672316 -80111156 - L1M4 LINE L1 -1896 4250 4132 432 169 0 13 chr11 68672684 68672761 -80110711 + MER81 DNA DNA 38 113 -1 324 188 0 0 chr11 68673122 68673186 -80110286 + (CA)n Simple_repeat Simple_repeat 1 64 0 217 217 0 0 chr11 68673813 68673859 -80109613 + CT-rich Low_complexity Low_complexity 1 46 0 385 89 0 0 chr11 68674895 68674951 -80108521 - pTR5 LTR ERV1 -1637 801 746 1865 131 35 0 chr11 68674951 68675265 -80108207 + MER84 LTR ERVI 89 413 -94 1574 86 0 14 chr11 68675266 68675476 -80107996 + AluSg SINE Alu 1 207 -103 198 0 0 0 chr11 68675504 68675526 -80107946 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 316 330 54 0 chr11 68675537 68675649 -80107823 - BaEV-int LTR ERV1 -5563 1086 969 3701 106 8 6 chr11 68675649 68676159 -80107313 - MER9 LTR ERVK 0 511 1 1145 170 17 17 chr11 68677584 68677846 -80105626 + MER4D LTR ERV1 506 903 0 522 272 20 12 chr11 68678015 68678116 -80105356 + MIR SINE MIR 63 169 -93 2099 115 0 7 chr11 68678116 68678412 -80105060 + AluSc SINE Alu 1 294 -15 522 272 20 12 chr11 68678412 68678483 -80104989 + MIR SINE MIR 169 238 -24 870 149 4 114 chr11 68678554 68678665 -80104807 - MER41B LTR ERV1 -12 597 565 1954 126 18 0 chr11 68678665 68678988 -80104484 - AluSx SINE Alu 0 328 1 870 149 4 114 chr11 68678988 68679137 -80104335 - MER41B LTR ERV1 -44 565 401 2904 70 0 63 chr11 68679140 68679582 -80103890 + MER4B LTR ERV1 1 414 -196 1311 105 16 93 chr11 68679592 68679659 -80103813 + MER4B LTR ERV1 382 453 -157 2178 117 0 0 chr11 68679659 68679958 -80103514 - AluSx SINE Alu -13 299 1 1311 105 16 93 chr11 68679958 68680138 -80103334 + MER4B LTR ERV1 453 610 0 2001 181 5 34 chr11 68680141 68680551 -80102921 - MER41B LTR ERV1 -237 398 1 518 311 94 8 chr11 68680759 68681013 -80102459 - L2 LINE L2 -461 2853 2578 1152 136 0 0 chr11 68681109 68681278 -80102194 - AluSg/x SINE Alu -20 292 124 358 156 0 89 chr11 68681286 68681331 -80102141 - MIR SINE MIR -67 195 160 1795 153 7 3 chr11 68681331 68681626 -80101846 - AluSx SINE Alu -16 296 1 358 156 0 89 chr11 68681626 68681670 -80101802 - MIR SINE MIR -102 160 114 2285 135 43 43 chr11 68681759 68681972 -80101500 - MSTC LTR MaLR -5 423 211 1657 146 108 0 chr11 68681972 68682240 -80101232 - AluSx SINE Alu -15 297 1 2285 135 43 43 chr11 68682240 68682395 -80101077 - MSTC LTR MaLR -217 211 52 4660 141 83 50 chr11 68682395 68682891 -80100581 + MER4D LTR ERV1 1 540 -363 2299 73 3 3 chr11 68682891 68683192 -80100280 + AluY SINE Alu 3 303 -8 4660 141 83 50 chr11 68683192 68683569 -80099903 + MER4D LTR ERV1 540 903 0 2285 135 43 43 chr11 68683569 68683622 -80099850 - MSTC LTR MaLR -375 53 1 2621 118 24 73 chr11 68683645 68683759 -80099713 - MSTA LTR MaLR 0 428 310 2205 115 3 0 chr11 68683759 68684071 -80099401 + AluSp SINE Alu 1 313 0 2621 118 24 73 chr11 68684071 68684406 -80099066 - MSTA LTR MaLR -118 310 1 937 271 81 11 chr11 68684447 68684927 -80098545 - L2 LINE L2 -243 3070 2553 258 402 0 0 chr11 68684951 68685048 -80098424 - L2 LINE L2 -3 3269 3173 554 291 90 29 chr11 68685066 68685216 -80098256 + MER112 DNA MER1_type 1 173 -87 588 29 0 0 chr11 68685216 68685286 -80098186 + (CTATT)n Simple_repeat Simple_repeat 4 73 0 554 291 90 29 chr11 68685286 68685379 -80098093 + MER112 DNA MER1_type 173 259 -1 2224 156 7 42 chr11 68685483 68685887 -80097585 - MLT1B LTR MaLR 0 390 1 236 320 57 16 chr11 68686268 68686390 -80097082 - L2 LINE L2 -622 2692 2566 * 288 301 8 75 chr11 68686382 68686515 -80096957 - MIR SINE MIR 0 262 139 1873 139 11 3 chr11 68686516 68686803 -80096669 - AluJb SINE Alu -23 289 1 1943 86 71 0 chr11 68686809 68687101 -80096371 - AluSc SINE Alu 0 311 1 369 0 0 0 chr11 68687101 68687142 -80096330 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 2158 103 0 0 chr11 68687142 68687424 -80096048 - AluSg SINE Alu -28 282 1 2094 104 0 10 chr11 68687425 68687724 -80095748 - AluSx SINE Alu -16 296 1 1656 154 0 28 chr11 68687762 68688047 -80095425 + AluJb SINE Alu 21 297 -15 1241 139 0 0 chr11 68688052 68688239 -80095233 - AluSg/x SINE Alu 0 310 124 302 312 16 58 chr11 68688240 68688429 -80095043 - L1MC5 LINE L1 -41 7920 7740 2298 73 3 22 chr11 68688776 68689089 -80094383 + AluY SINE Alu 1 307 -4 433 285 62 7 chr11 68689107 68689251 -80094221 + MIR SINE MIR 13 164 -98 2075 109 0 3 chr11 68689257 68689542 -80093930 + AluSc SINE Alu 1 284 -25 533 15 15 0 chr11 68689542 68689608 -80093864 + (TAGA)n Simple_repeat Simple_repeat 2 68 0 1355 144 0 5 chr11 68689662 68689877 -80093595 - AluJo SINE Alu -91 221 8 2051 127 0 3 chr11 68689889 68690189 -80093283 - AluSx SINE Alu -13 299 1 36 0 0 0 chr11 68690189 68690225 -80093247 + AT_rich Low_complexity Low_complexity 1 36 0 2073 137 0 0 chr11 68690260 68690566 -80092906 - AluSx SINE Alu -6 306 1 199 284 54 0 chr11 68690579 68690653 -80092819 + MIR SINE MIR 184 261 -1 276 265 0 29 chr11 68690712 68690780 -80092692 + L2 LINE L2 3205 3270 -2 2151 122 0 0 chr11 68691450 68691761 -80091711 - AluY SINE Alu 0 311 1 1696 142 93 0 chr11 68691874 68692142 -80091330 + AluJb SINE Alu 1 293 -19 2171 110 10 0 chr11 68692196 68692505 -80090967 + AluSx SINE Alu 1 312 0 602 221 0 36 chr11 68692551 68692691 -80090781 + FLAM_C SINE Alu 2 136 -7 1739 138 17 21 chr11 68692693 68692982 -80090490 - AluJb SINE Alu -24 288 1 346 348 33 22 chr11 68693217 68693401 -80090071 + L2 LINE L2 2233 2418 -896 241 289 60 0 chr11 68693585 68693668 -80089804 + L2 LINE L2 3226 3313 0 2345 64 0 7 chr11 68693971 68694269 -80089203 + AluY SINE Alu 1 296 -15 2140 249 25 22 chr11 68694269 68694358 -80089114 + L1MD1 LINE L1 4293 4380 -1766 1720 170 0 34 chr11 68694358 68694681 -80088791 - AluSx SINE Alu 0 312 1 2140 249 25 22 chr11 68694681 68695304 -80088168 + L1MD1 LINE L1 4380 5007 -1139 1653 169 44 27 chr11 68695301 68695402 -80088070 + L1MD1 LINE L1 5485 5583 -659 * 2137 120 3 0 chr11 68695402 68695710 -80087762 - AluSg SINE Alu -1 309 1 1653 169 44 27 chr11 68695710 68695946 -80087526 + L1MD1 LINE L1 5583 5828 -414 1216 93 6 44 chr11 68695947 68696083 -80087389 + AluSx SINE Alu 1 131 -181 2141 92 3 0 chr11 68696083 68696403 -80087069 + AluSp SINE Alu 1 321 0 1216 93 6 44 chr11 68696403 68696447 -80087025 + AluSx SINE Alu 131 175 -137 338 300 175 18 chr11 68696548 68696885 -80086587 + L2 LINE L2 2869 3258 -14 285 98 0 0 chr11 68697747 68697788 -80085684 + (TCTCC)n Simple_repeat Simple_repeat 1 41 0 204 195 12 85 chr11 68699715 68699797 -80083675 + C-rich Low_complexity Low_complexity 4 79 0 184 393 57 8 chr11 68700675 68700797 -80082675 - L2 LINE L2 -5 3267 3140 212 178 111 0 chr11 68700817 68700862 -80082610 - L2 LINE L2 -1 3312 3263 734 194 118 32 chr11 68701770 68701956 -80081516 + MIR SINE MIR 3 204 -58 191 311 170 34 chr11 68702159 68702542 -80080930 + L2 LINE L2 2807 3241 -31 208 294 128 9 chr11 68702593 68702702 -80080770 + MIR SINE MIR 24 145 -63 198 103 0 0 chr11 68703047 68703076 -80080396 + (TGGGGG)n Simple_repeat Simple_repeat 3 31 0 554 309 57 0 chr11 68704525 68704700 -80078772 + MER91A DNA MER1_type 10 194 -2 365 297 55 0 chr11 68704993 68705138 -80078334 - ERVL LTR ERVL -1142 4622 4470 1803 102 71 34 chr11 68705150 68705444 -80078028 + AluSq SINE Alu 1 305 -8 1137 258 24 93 chr11 68705540 68705875 -80077597 + MLT1J LTR MaLR 11 301 -210 2497 56 0 0 chr11 68705875 68706179 -80077293 + AluY SINE Alu 1 304 -7 1137 258 24 93 chr11 68706179 68706350 -80077122 + MLT1J LTR MaLR 301 482 -29 1995 228 72 41 chr11 68706367 68706933 -80076539 - MLT1G1 LTR MaLR -4 591 8 1217 261 30 62 chr11 68707141 68707174 -80076298 + MLT1H LTR MaLR 72 105 -444 2329 103 0 0 chr11 68707174 68707486 -80075986 + AluSx SINE Alu 1 312 0 1217 261 30 62 chr11 68707486 68707923 -80075549 + MLT1H LTR MaLR 105 527 -22 242 259 45 45 chr11 68708234 68708346 -80075126 + L2 LINE L2 2340 2451 -863 1982 87 10 32 chr11 68708359 68708670 -80074802 - AluY SINE Alu -7 304 1 243 155 28 14 chr11 68709300 68709371 -80074101 + (TG)n Simple_repeat Simple_repeat 2 73 0 582 261 160 1 chr11 68710034 68710239 -80073233 - MIR SINE MIR -26 236 2 254 227 27 0 chr11 68710268 68710343 -80073129 - MIR SINE MIR -82 126 50 389 213 67 67 chr11 68710419 68710583 -80072889 + MIR SINE MIR 3 166 -96 445 190 0 0 chr11 68710747 68710826 -80072646 + AluSp/q SINE Alu 225 303 -10 726 205 8 0 chr11 68710869 68710991 -80072481 - FLAM_C SINE Alu -10 123 1 2133 106 3 3 chr11 68710999 68711310 -80072162 - AluY SINE Alu 0 311 1 1141 188 29 81 chr11 68711345 68711653 -80071819 - AluJb SINE Alu -12 300 9 227 159 45 0 chr11 68711673 68711717 -80071755 - MER119 DNA MER1_type -45 538 493 356 218 97 8 chr11 68711735 68711859 -80071613 + MER119 DNA MER1_type 448 582 -1 360 316 66 0 chr11 68712067 68712203 -80071269 - MIR SINE MIR -111 151 7 1817 113 63 3 chr11 68712482 68712766 -80070706 - AluSq SINE Alu -9 304 4 582 255 51 41 chr11 68712846 68713042 -80070430 + MIR SINE MIR 44 241 -21 2303 102 0 0 chr11 68713046 68713359 -80070113 + AluSq SINE Alu 1 313 0 526 251 55 44 chr11 68714360 68714543 -80068929 - MIR SINE MIR -34 228 44 1888 111 59 3 chr11 68714622 68714910 -80068562 + AluSq SINE Alu 1 304 -9 360 316 66 0 chr11 68715189 68715325 -80068147 + MIR SINE MIR 7 151 -111 356 218 97 8 chr11 68715533 68715657 -80067815 - MER119 DNA MER1_type -1 582 448 227 159 45 0 chr11 68715675 68715719 -80067753 + MER119 DNA MER1_type 493 538 -45 * 230 206 16 0 chr11 68715708 68715739 -80067733 - MER119 DNA MER1_type -74 509 480 1451 161 30 79 chr11 68715739 68716044 -80067428 + AluJb SINE Alu 9 298 -14 230 206 16 0 chr11 68716044 68716075 -80067397 - MER119 DNA MER1_type -103 480 446 2216 100 3 0 chr11 68716079 68716389 -80067083 + AluY SINE Alu 1 311 0 726 205 8 0 chr11 68716397 68716519 -80066953 + FLAM_C SINE Alu 1 123 -10 1887 97 3 97 chr11 68716574 68716895 -80066577 - AluSq SINE Alu -22 291 1 241 289 60 0 chr11 68717199 68717282 -80066190 - L2 LINE L2 0 3313 3226 346 348 33 22 chr11 68717466 68717650 -80065822 - L2 LINE L2 -896 2418 2233 1739 138 17 21 chr11 68717885 68718174 -80065298 + AluJb SINE Alu 1 288 -24 620 214 0 36 chr11 68718176 68718316 -80065156 - FLAM_C SINE Alu -7 136 2 2171 110 10 0 chr11 68718362 68718671 -80064801 - AluSx SINE Alu 0 312 1 1696 142 93 0 chr11 68718725 68718993 -80064479 - AluJb SINE Alu -19 293 1 2139 125 0 0 chr11 68719106 68719417 -80064055 + AluY SINE Alu 1 311 0 276 265 0 29 chr11 68720086 68720154 -80063318 - L2 LINE L2 -2 3270 3205 199 284 54 0 chr11 68720213 68720287 -80063185 - MIR SINE MIR -1 261 184 2073 137 0 0 chr11 68720300 68720606 -80062866 + AluSx SINE Alu 1 306 -6 36 0 0 0 chr11 68720641 68720677 -80062795 + AT_rich Low_complexity Low_complexity 1 36 0 2057 131 0 0 chr11 68720677 68720975 -80062497 + AluSx SINE Alu 1 298 -14 1379 144 0 5 chr11 68720987 68721202 -80062270 + AluJo SINE Alu 8 221 -91 533 15 15 0 chr11 68721256 68721322 -80062150 + (TCTA)n Simple_repeat Simple_repeat 2 68 0 2104 109 0 3 chr11 68721322 68721607 -80061865 - AluSc SINE Alu -25 284 1 442 285 62 7 chr11 68721613 68721757 -80061715 - MIR SINE MIR -98 164 13 216 0 0 0 chr11 68721778 68721802 -80061670 + (T)n Simple_repeat Simple_repeat 1 24 0 2109 67 7 3 chr11 68721916 68722198 -80061274 - AluY SINE Alu -28 283 1 273 291 12 23 chr11 68722548 68722634 -80060838 - L2 LINE L2 -15 3257 3173 2038 119 3 17 chr11 68722766 68723087 -80060385 - AluSq SINE Alu 0 313 1 2170 103 7 0 chr11 68723090 68723390 -80060082 - AluSp SINE Alu -11 302 1 1303 182 8 173 chr11 68723394 68723543 -80059929 - L1M4 LINE L1 -1679 4467 4295 1997 134 0 0 chr11 68723543 68723847 -80059625 - AluSx SINE Alu 0 304 1 1303 182 8 173 chr11 68723847 68723865 -80059607 - L1M4 LINE L1 -1851 4295 4276 2146 124 0 0 chr11 68723865 68724164 -80059308 - AluSx SINE Alu -13 299 1 1303 182 8 173 chr11 68724164 68724658 -80058814 - L1M4 LINE L1 -1870 4276 3914 440 205 0 0 chr11 68724690 68724802 -80058670 - L1M4 LINE L1 -2191 3955 3844 1681 159 7 13 chr11 68724802 68725104 -80058368 - AluSx SINE Alu -12 300 1 2163 99 10 10 chr11 68725104 68725408 -80058064 - AluSx SINE Alu -8 304 1 195 284 0 0 chr11 68726013 68726101 -80057371 + (TCCA)n Simple_repeat Simple_repeat 4 91 0 546 195 6 17 chr11 68726113 68726287 -80057185 + (TCCA)n Simple_repeat Simple_repeat 3 174 0 189 237 0 0 chr11 68726327 68726386 -80057086 + (TCCA)n Simple_repeat Simple_repeat 1 59 0 542 225 6 0 chr11 68726400 68726573 -80056899 + (TCCA)n Simple_repeat Simple_repeat 1 174 0 481 191 7 7 chr11 68726592 68726733 -80056739 + (TCCA)n Simple_repeat Simple_repeat 2 142 0 227 332 183 11 chr11 68727358 68727707 -80055765 + L2 LINE L2 2569 2977 -337 1962 119 24 0 chr11 68727709 68728003 -80055469 - AluSq SINE Alu -12 301 1 343 256 171 8 chr11 68728061 68728178 -80055294 + MIR3 SINE MIR 6 141 -67 324 150 53 158 chr11 68728336 68728420 -80055052 - L2 LINE L2 -37 3276 3209 886 231 52 19 chr11 68728420 68728632 -80054840 + MER20 DNA MER1_type 1 219 0 324 150 53 158 chr11 68728632 68728680 -80054792 - L2 LINE L2 -104 3209 3158 640 138 11 58 chr11 68728685 68728873 -80054599 + CT-rich Low_complexity Low_complexity 2 180 0 7460 38 2 7 chr11 68728893 68730060 -80053412 - L1PA4 LINE L1 0 6155 4992 212 234 0 0 chr11 68730060 68730082 -80053390 + CT-rich Low_complexity Low_complexity 4 25 -25 3985 91 0 6 chr11 68730082 68730596 -80052876 - MER9 LTR ERVK 0 511 1 212 234 0 0 chr11 68730596 68730620 -80052852 + CT-rich Low_complexity Low_complexity 24 50 0 270 81 0 0 chr11 68730628 68730665 -80052807 + (TCCCC)n Simple_repeat Simple_repeat 3 39 0 1059 106 38 12 chr11 68730665 68730825 -80052647 - AluSg/x SINE Alu -18 294 131 1531 248 164 5 chr11 68730826 68731468 -80052004 - L2 LINE L2 -146 3167 2421 266 300 15 52 chr11 68731770 68731901 -80051571 - MIR SINE MIR -40 168 41 217 232 0 36 chr11 68735526 68735582 -80047890 - L2 LINE L2 -252 3061 3008 1619 149 4 22 chr11 68735700 68735968 -80047504 - AluJb SINE Alu -49 263 1 198 333 49 20 chr11 68736428 68736530 -80046942 + MIR SINE MIR 59 163 -99 267 286 120 8 chr11 68736651 68736784 -80046688 - MIR SINE MIR -7 255 108 245 250 0 26 chr11 68737745 68737901 -80045571 + (TG)n Simple_repeat Simple_repeat 1 152 0 466 193 0 37 chr11 68737970 68738157 -80045315 + (TG)n Simple_repeat Simple_repeat 1 180 0 1072 110 18 0 chr11 68738634 68738797 -80044675 - AluSc SINE Alu -6 303 138 503 339 114 22 chr11 68738897 68739404 -80044068 + L2 LINE L2 1441 1994 -1320 330 316 149 43 chr11 68739402 68739725 -80043747 - L2 LINE L2 -1 3271 2915 * 268 310 222 17 chr11 68739726 68740023 -80043449 - L2 LINE L2 -1018 2296 1939 269 317 14 19 chr11 68740094 68740245 -80043227 + L2 LINE L2 2986 3198 -74 225 94 0 0 chr11 68741748 68741780 -80041692 + (TAA)n Simple_repeat Simple_repeat 1 32 0 711 272 21 11 chr11 68741828 68742019 -80041453 - MIR SINE MIR -56 206 14 212 149 21 0 chr11 68745045 68745092 -80038380 + MIR SINE MIR 82 129 -79 753 149 0 0 chr11 68747769 68747944 -80035528 + (TG)n Simple_repeat Simple_repeat 2 176 0 261 336 117 29 chr11 68748829 68748966 -80034506 - L2 LINE L2 -2 3311 3163 209 335 62 0 chr11 68749034 68749128 -80034344 + MIR SINE MIR 34 139 -69 1849 123 19 38 chr11 68749287 68749603 -80033869 - AluSx SINE Alu -2 310 1 234 324 0 0 chr11 68749685 68749759 -80033713 + MIR SINE MIR 79 152 -110 2335 89 0 6 chr11 68749869 68750183 -80033289 - AluSx SINE Alu 0 312 1 235 221 23 105 chr11 68750503 68750589 -80032883 - L2 LINE L2 -1 3271 3193 2037 107 3 10 chr11 68750752 68751065 -80032407 + AluSx SINE Alu 1 312 0 214 233 0 0 chr11 68751970 68752013 -80031459 - MIR SINE MIR -103 159 117 962 180 52 0 chr11 68753263 68753457 -80030015 - MIR SINE MIR -44 218 15 224 197 28 42 chr11 68753881 68753952 -80029520 + GA-rich Low_complexity Low_complexity 1 70 0 468 162 8 94 chr11 68754143 68754260 -80029212 + MER81 DNA DNA 7 113 -1 324 188 0 0 chr11 68754619 68754683 -80028789 + (CA)n Simple_repeat Simple_repeat 1 64 0 1978 107 17 17 chr11 68805530 68805828 -79977644 + AluSg SINE Alu 2 299 -11 2480 79 0 0 chr11 68805929 68806233 -79977239 - AluY SINE Alu -2 309 6 531 139 0 0 chr11 68806247 68806333 -79977139 - MER4D LTR ERV1 -377 526 441 2045 97 0 100 chr11 68806333 68806652 -79976820 + AluSq SINE Alu 1 287 -26 225 65 0 0 chr11 68806652 68806683 -79976789 + (CATA)n Simple_repeat Simple_repeat 2 32 0 2282 119 0 3 chr11 68806700 68807003 -79976469 + AluSg SINE Alu 1 302 -8 282 226 57 19 chr11 68807003 68807109 -79976363 - L1MB7 LINE L1 -47 6137 6028 1839 106 3 68 chr11 68807118 68807440 -79976032 + AluSp SINE Alu 1 301 -12 1547 145 80 11 chr11 68807451 68807713 -79975759 + AluJb SINE Alu 11 290 -22 22 0 0 0 chr11 68807747 68807769 -79975703 + AT_rich Low_complexity Low_complexity 1 22 0 2332 92 13 10 chr11 68807869 68808172 -79975300 - AluSx SINE Alu -8 304 1 337 353 106 5 chr11 68808225 68808443 -79975029 - L1MEc LINE L1 -5404 992 753 2097 145 3 0 chr11 68808930 68809226 -79974246 + AluSx SINE Alu 1 297 -15 25 51 0 0 chr11 68809259 68809298 -79974174 + AT_rich Low_complexity Low_complexity 1 39 0 206 376 60 0 chr11 68809590 68809707 -79973765 - MIR SINE MIR -102 160 37 2492 94 0 0 chr11 68809840 68810147 -79973325 - AluSq SINE Alu -6 307 1 1116 90 0 0 chr11 68810336 68810469 -79973003 + AluSq/x SINE Alu 1 133 -180 1882 142 0 43 chr11 68810646 68810783 -79972689 + AluSp SINE Alu 1 142 -171 4603 37 0 0 chr11 68810783 68811392 -79972080 + L1PA4 LINE L1 5572 6180 0 1882 142 0 43 chr11 68811392 68811577 -79971895 + AluSp SINE Alu 142 310 -3 796 103 44 29 chr11 68811577 68811713 -79971759 - MLT1A1 LTR MaLR -227 138 1 258 293 218 0 chr11 68811718 68811851 -79971621 - MIR SINE MIR -66 196 35 216 288 54 36 chr11 68811941 68811973 -79971499 + MIR SINE MIR 31 61 -147 2269 113 13 0 chr11 68811973 68812274 -79971198 - AluSx SINE Alu -7 305 1 216 288 54 36 chr11 68812274 68812352 -79971120 + MIR SINE MIR 61 143 -65 1404 65 0 6 chr11 68812615 68812783 -79970689 - AluSp SINE Alu -18 295 129 1632 71 5 0 chr11 68812783 68812979 -79970493 - AluSp SINE Alu -116 197 1 2493 103 0 0 chr11 68813312 68813624 -79969848 + AluSx SINE Alu 1 312 0 950 206 34 10 chr11 68815480 68815689 -79967783 - MLT1A1 LTR MaLR 0 365 152 2126 144 0 0 chr11 68815692 68815991 -79967481 - AluSq SINE Alu -14 299 1 238 292 29 85 chr11 68816010 68816189 -79967283 - MIR3 SINE MIR -62 146 12 2059 147 0 10 chr11 68816897 68817197 -79966275 + AluJb SINE Alu 11 307 -5 673 203 0 23 chr11 68817253 68817386 -79966086 - FLAM_C SINE Alu -3 130 1 2336 111 0 0 chr11 68817395 68817692 -79965780 - AluSx SINE Alu -15 297 1 2017 158 0 10 chr11 68817902 68818200 -79965272 - AluSx SINE Alu -17 295 1 676 241 161 20 chr11 68818336 68818535 -79964937 - MIR SINE MIR -32 230 4 2138 145 7 0 chr11 68818710 68819013 -79964459 + AluJb SINE Alu 1 305 -7 299 303 240 0 chr11 68819811 68819986 -79963486 + MIR SINE MIR 3 219 -43 238 206 209 12 chr11 68823160 68823263 -79960209 + MIR3 SINE MIR 11 123 -106 210 250 0 29 chr11 68824838 68824906 -79958566 + G-rich Low_complexity Low_complexity 1 66 0 340 275 70 28 chr11 68826871 68827013 -79956459 + L2 LINE L2 3165 3312 -1 1639 127 82 0 chr11 68827016 68827283 -79956189 - AluSx SINE Alu -21 291 3 214 175 0 88 chr11 68827369 68827426 -79956046 - MIR SINE MIR -59 149 98 190 328 31 0 chr11 68827538 68827602 -79955870 - MIR SINE MIR -150 112 47 2136 96 14 0 chr11 68829388 68829681 -79953791 + AluSx SINE Alu 1 297 -15 363 325 44 9 chr11 68829681 68829795 -79953677 + MER5A DNA MER1_type 44 161 -28 1461 144 63 28 chr11 68832079 68832363 -79951109 - AluJb SINE Alu -18 294 1 781 176 134 0 chr11 68832480 68832622 -79950850 - FRAM SINE Alu -17 159 1 2367 69 3 7 chr11 68832878 68833183 -79950289 + AluSg SINE Alu 1 304 -6 455 268 57 96 chr11 68833330 68833456 -79950016 - MIR SINE MIR 0 262 148 2214 85 0 3 chr11 68833456 68833749 -79949723 - AluSq SINE Alu -21 292 1 455 268 57 96 chr11 68833749 68833850 -79949622 - MIR SINE MIR -114 148 45 308 349 26 67 chr11 68833936 68834205 -79949267 - MIR SINE MIR -3 259 2 1831 174 6 19 chr11 68834458 68834774 -79948698 - AluJo SINE Alu 0 312 1 2135 108 3 3 chr11 68834854 68835161 -79948311 + AluSx SINE Alu 1 307 -5 2385 57 0 10 chr11 68835261 68835562 -79947910 - AluY SINE Alu -13 298 1 28 29 0 0 chr11 68835608 68835643 -79947829 + AT_rich Low_complexity Low_complexity 1 35 0 238 235 177 29 chr11 68835660 68835937 -79947535 - L1ME LINE L1 -206 5915 5598 229 378 0 11 chr11 68835991 68836081 -79947391 + MIR SINE MIR 16 104 -104 2350 83 3 3 chr11 68836088 68836401 -79947071 - AluSp SINE Alu 0 313 1 1419 67 0 0 chr11 68836401 68836572 -79946900 - AluSp SINE Alu -11 302 129 1539 71 5 0 chr11 68836572 68836768 -79946704 - AluSp SINE Alu -116 197 1 1903 134 3 7 chr11 68837101 68837393 -79946079 + AluSx SINE Alu 2 292 -20 725 253 108 75 chr11 68837400 68837658 -79945814 - MLT1J2 LTR MaLR -46 404 156 2427 63 0 0 chr11 68837658 68837959 -79945513 - AluY SINE Alu -10 301 1 2189 112 0 0 chr11 68837962 68838258 -79945214 - AluSx SINE Alu -16 296 1 725 253 108 75 chr11 68838258 68838382 -79945090 - MLT1J2 LTR MaLR -295 155 5 838 276 156 34 chr11 68838383 68839218 -79944254 - HAL1 LINE L1 -1088 1419 314 209 376 60 0 chr11 68839620 68839737 -79943735 - MIR SINE MIR -102 160 37 2220 110 0 3 chr11 68839870 68840179 -79943293 - AluSq SINE Alu -5 308 1 228 301 23 85 chr11 68840198 68840374 -79943098 - MIR SINE MIR -78 184 20 1850 147 0 11 chr11 68841086 68841372 -79942100 + AluJb SINE Alu 11 293 -19 1992 123 3 3 chr11 68844137 68844437 -79939035 - AluSp SINE Alu -13 300 1 312 377 83 25 chr11 68844439 68844715 -79938757 - L1M4 LINE L1 -1183 4963 4672 1898 106 53 3 chr11 68844894 68845176 -79938296 - AluSx SINE Alu -16 296 1 232 303 103 36 chr11 68845178 68845343 -79938129 + L2 LINE L2 2917 3092 -180 2345 97 0 0 chr11 68845426 68845736 -79937736 - AluSg SINE Alu 0 310 1 242 116 23 0 chr11 68845797 68845840 -79937632 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 750 172 39 0 chr11 68845902 68846030 -79937442 - FLAM_C SINE Alu 0 133 1 284 316 21 0 chr11 68846652 68846747 -79936725 - L2 LINE L2 0 3272 3176 201 349 80 42 chr11 68847125 68847437 -79936035 + L2 LINE L2 2522 2845 -469 1021 153 18 6 chr11 68847552 68847722 -79935750 - AluSg/x SINE Alu -21 289 118 1879 117 32 29 chr11 68847736 68847910 -79935562 - AluSg SINE Alu 0 310 133 2473 54 0 0 chr11 68847910 68848206 -79935266 - AluY SINE Alu -15 296 1 1879 117 32 29 chr11 68848206 68848340 -79935132 - AluSg SINE Alu -177 133 1 266 218 246 27 chr11 68848343 68848453 -79935019 + MER112 DNA MER1_type 126 259 -1 344 332 116 44 chr11 68848499 68848831 -79934641 + L2 LINE L2 2927 3288 -25 2110 125 0 0 chr11 68848831 68849127 -79934345 - AluSx SINE Alu -16 296 1 344 332 116 44 chr11 68849127 68849155 -79934317 + L2 LINE L2 3288 3313 0 196 304 25 25 chr11 68849764 68849843 -79933629 + MIR SINE MIR 20 98 -164 466 295 217 10 chr11 68850174 68850469 -79933003 + L2 LINE L2 2957 3312 -1 2237 96 0 0 chr11 68850479 68850772 -79932700 + AluSg SINE Alu 1 293 -17 1169 143 111 0 chr11 68850802 68851046 -79932426 - L1MB8 LINE L1 -212 5966 5696 264 314 76 0 chr11 68851133 68851238 -79932234 - MIR SINE MIR -81 181 69 501 282 56 42 chr11 68851902 68852081 -79931391 - MIR SINE MIR -36 226 42 1867 127 3 54 chr11 68852081 68852395 -79931077 + AluSx SINE Alu 1 298 -14 501 282 56 42 chr11 68852395 68852431 -79931041 - MIR SINE MIR -220 42 8 201 400 17 17 chr11 68852493 68852613 -79930859 + L2 LINE L2 3104 3223 -49 252 0 0 0 chr11 68852628 68852656 -79930816 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 218 237 206 0 chr11 68852936 68853033 -79930439 - L2 LINE L2 -15 3257 3141 266 253 0 11 chr11 68853248 68853335 -79930137 + MER113 DNA MER1_type? 6 91 -430 2158 116 3 0 chr11 68853337 68853638 -79929834 - AluSq SINE Alu -11 302 1 1426 201 22 32 chr11 68853778 68853802 -79929670 - AluJo SINE Alu -1 311 288 222 37 0 0 chr11 68853802 68853829 -79929643 + (TCCCC)n Simple_repeat Simple_repeat 5 31 0 1426 201 22 32 chr11 68853829 68854118 -79929354 - AluJo SINE Alu -24 288 1 957 128 0 0 chr11 68854147 68854280 -79929192 - AluSq/x SINE Alu -180 133 1 1389 210 188 6 chr11 68854386 68854822 -79928650 - MLT1F1 LTR MaLR -3 564 54 224 263 44 94 chr11 68855210 68855370 -79928102 + L2 LINE L2 2625 2776 -538 2102 133 0 13 chr11 68855540 68855675 -79927797 + AluSx SINE Alu 2 137 -165 1935 127 3 33 chr11 68855675 68855811 -79927661 + AluSx SINE Alu 1 139 -173 2336 57 0 0 chr11 68855811 68856124 -79927348 + AluY SINE Alu 1 313 0 1935 127 3 33 chr11 68856124 68856327 -79927145 + AluSx SINE Alu 139 312 0 2102 133 0 13 chr11 68856327 68856493 -79926979 + AluSx SINE Alu 137 299 -3 1923 155 0 13 chr11 68858829 68859145 -79924327 + AluJb SINE Alu 1 312 0 623 125 0 0 chr11 68859898 68859986 -79923486 - AluJ/FRAM SINE Alu -5 307 220 1949 129 0 17 chr11 68859989 68860283 -79923189 + AluSx SINE Alu 5 293 -19 1821 86 0 4 chr11 68860290 68860533 -79922939 + AluY SINE Alu 1 242 -69 348 312 122 11 chr11 68861259 68861448 -79922024 - L2 LINE L2 0 3313 3104 2019 105 16 20 chr11 68861483 68861789 -79921683 + AluSx SINE Alu 1 305 -7 537 186 64 0 chr11 68861796 68861936 -79921536 + L1MA7 LINE L1 6139 6287 -4 582 189 0 0 chr11 68862003 68862093 -79921379 + FAM SINE Alu 74 163 -22 30 0 0 0 chr11 68862093 68862123 -79921349 + AT_rich Low_complexity Low_complexity 1 30 0 1085 228 153 14 chr11 68862125 68862593 -79920879 - L2 LINE L2 -247 3066 2535 211 326 81 0 chr11 68862655 68862741 -79920731 - MIR3 SINE MIR -17 191 99 2344 80 0 3 chr11 68865395 68865695 -79917777 - AluSp SINE Alu -14 299 1 1493 158 26 11 chr11 68865699 68865971 -79917501 - L1MB7 LINE L1 -47 6137 5862 2144 85 32 0 chr11 68866084 68866367 -79917105 - AluSg SINE Alu -18 292 1 2090 99 0 32 chr11 68866367 68866679 -79916793 - AluSx SINE Alu -10 302 1 191 287 245 0 chr11 68866699 68866793 -79916679 + L2 LINE L2 3155 3271 -1 324 361 98 0 chr11 68868101 68868234 -79915238 + HAL1 LINE L1 1 146 -2361 1359 118 74 63 chr11 68868257 68868386 -79915086 - AluSq SINE Alu -39 274 148 2310 73 7 3 chr11 68868386 68868688 -79914784 - AluSq SINE Alu -10 303 1 1359 118 74 63 chr11 68868688 68868829 -79914643 - AluSq SINE Alu -165 148 1 2166 82 4 0 chr11 68868833 68869167 -79914305 - AluY SINE Alu 0 335 1 711 77 0 0 chr11 68869168 68869259 -79914213 - AluY SINE Alu -219 92 2 376 347 61 47 chr11 68869335 68869678 -79913794 + HAL1 LINE L1 235 582 -1925 2282 95 3 9 chr11 68869909 68870224 -79913248 - AluSp SINE Alu 0 313 1 1893 123 51 0 chr11 68870244 68870537 -79912935 - AluSx SINE Alu -2 310 3 530 246 62 6 chr11 68870738 68870917 -79912555 - L1ME3A LINE L1 -219 5951 5763 550 300 78 8 chr11 68870984 68871227 -79912245 - L1ME3A LINE L1 -1479 4667 4408 316 156 63 21 chr11 68871229 68871323 -79912149 + AluJo SINE Alu 87 142 -160 1336 175 21 7 chr11 68871331 68871611 -79911861 + AluJb SINE Alu 23 306 -6 1861 118 0 0 chr11 68871621 68871876 -79911596 + AluSx SINE Alu 1 255 -57 1774 84 0 24 chr11 68871877 68872118 -79911354 + AluY SINE Alu 58 294 -17 198 0 0 0 chr11 68872118 68872140 -79911332 + (TTAAA)n Simple_repeat Simple_repeat 3 24 0 775 189 0 8 chr11 68872170 68872302 -79911170 - FLAM_C SINE Alu -2 131 1 2190 88 16 10 chr11 68872348 68872654 -79910818 - AluSq SINE Alu -5 308 1 2186 76 0 0 chr11 68872654 68872930 -79910542 - AluSq SINE Alu -37 276 1 470 228 44 0 chr11 68872942 68873056 -79910416 + HAL1 LINE L1 1681 1799 -708 420 211 110 29 chr11 68873135 68873525 -79909947 + HAL1 LINE L1 1987 2454 -53 1949 159 7 3 chr11 68879117 68879419 -79904053 - AluJb SINE Alu -9 303 1 2780 13 3 0 chr11 68880408 68880710 -79902762 + AluYa5 SINE Alu 1 303 -8 2038 140 31 0 chr11 68880720 68881006 -79902466 + AluJb SINE Alu 1 295 -17 846 219 134 3 chr11 68881074 68881357 -79902115 + MER33 DNA MER1_type 5 324 0 2232 81 10 29 chr11 68881407 68881714 -79901758 + AluSq SINE Alu 1 301 -12 1911 134 38 10 chr11 68881800 68882090 -79901382 + AluJb SINE Alu 1 298 -14 253 221 0 53 chr11 68882226 68882321 -79901151 + L1MB7 LINE L1 5265 5354 -2454 1353 160 75 85 chr11 68882343 68882637 -79900835 + AluJo SINE Alu 1 291 -11 542 138 21 11 chr11 68882639 68882733 -79900739 + AluS SINE Alu 3 97 -216 195 42 0 0 chr11 68882839 68882863 -79900609 + (A)n Simple_repeat Simple_repeat 1 24 0 2191 168 61 36 chr11 68882973 68883354 -79900118 + L1MB7 LINE L1 5680 6077 -107 1489 155 29 97 chr11 68883354 68883483 -79899989 + AluJb SINE Alu 1 137 -175 2468 80 0 10 chr11 68883483 68883797 -79899675 + AluY SINE Alu 1 311 0 1489 155 29 97 chr11 68883797 68883976 -79899496 + AluJb SINE Alu 137 288 -24 2191 168 61 36 chr11 68883976 68884071 -79899401 + L1MB7 LINE L1 6077 6168 -16 242 116 23 0 chr11 68884410 68884453 -79899019 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 1331 141 60 114 chr11 68884453 68884752 -79898720 - AluJo SINE Alu -29 283 1 874 336 24 12 chr11 68885031 68885450 -79898022 + L1MEc LINE L1 778 1201 -5937 262 217 113 66 chr11 68885820 68885990 -79897482 + L1MEc LINE L1 1362 1585 -5362 1652 163 61 4 chr11 68885991 68886268 -79897204 + AluJb SINE Alu 14 306 -6 237 29 57 0 chr11 68886274 68886309 -79897163 - L1M2 LINE L1 -489 5802 5766 2275 114 28 23 chr11 68886310 68886706 -79896766 + L1MA7 LINE L1 5892 6289 -2 2182 123 19 10 chr11 68887732 68888040 -79895432 + AluSx SINE Alu 1 311 -1 1241 156 78 104 chr11 68888180 68888342 -79895130 - AluJo SINE Alu -12 300 148 2215 83 24 10 chr11 68888342 68888631 -79894841 - AluSc SINE Alu -16 293 1 1241 156 78 104 chr11 68888631 68888776 -79894696 - AluJo SINE Alu -164 148 1 786 186 0 0 chr11 68889478 68889607 -79893865 + FLAM_C SINE Alu 1 129 -4 2165 120 14 0 chr11 68889619 68889903 -79893569 - AluSx SINE Alu -24 288 1 200 385 45 13 chr11 68890582 68890738 -79892734 - L2 LINE L2 -427 2887 2727 2008 132 0 0 chr11 68890834 68891114 -79892358 + AluSx SINE Alu 1 280 -32 180 0 0 0 chr11 68891120 68891140 -79892332 + (CAAAA)n Simple_repeat Simple_repeat 5 24 0 350 315 72 27 chr11 68891146 68891438 -79892034 + L1M4 LINE L1 4679 4983 -1163 23 0 0 0 chr11 68891509 68891532 -79891940 + AT_rich Low_complexity Low_complexity 1 23 0 2297 89 27 0 chr11 68891559 68891852 -79891620 + AluSx SINE Alu 1 301 -11 1715 228 106 49 chr11 68891889 68892234 -79891238 + L1M4 LINE L1 3043 3367 -2779 1650 147 75 0 chr11 68892234 68892499 -79890973 + AluJb SINE Alu 1 285 -27 1715 228 106 49 chr11 68892499 68892842 -79890630 + L1M4 LINE L1 3367 3770 -2376 1882 124 0 4 chr11 68892842 68893101 -79890371 - AluSx SINE Alu -54 258 1 1187 191 0 9 chr11 68893105 68893320 -79890152 - AluJo SINE Alu -18 294 82 311 141 51 26 chr11 68893333 68893411 -79890061 + L1M4 LINE L1 4309 4388 -1758 1948 107 74 3 chr11 68893419 68893717 -79889755 - Tigger1 DNA MER2_type -709 1709 1391 1026 68 0 0 chr11 68894136 68894254 -79889218 - AluY SINE Alu -193 118 1 992 120 0 0 chr11 68894287 68894420 -79889052 + FLAM_C SINE Alu 1 133 0 553 124 4 59 chr11 68894859 68894875 -79888597 - L1P4 LINE L1 -706 5459 5444 2116 124 0 0 chr11 68894875 68895165 -79888307 - AluSx SINE Alu -22 290 1 553 124 4 59 chr11 68895165 68895269 -79888203 - L1P4 LINE L1 -721 5444 5343 1167 210 38 116 chr11 68895269 68895542 -79887930 - MLT1B LTR MaLR 0 390 97 2404 65 0 17 chr11 68895542 68895834 -79887638 + AluY SINE Alu 1 287 -24 300 70 0 0 chr11 68895837 68895880 -79887592 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1167 210 38 116 chr11 68895880 68895998 -79887474 - MLT1B LTR MaLR -295 95 26 1023 176 59 5 chr11 68896150 68896372 -79887100 - L1M4 LINE L1 -944 5202 4969 219 36 0 0 chr11 68896903 68896931 -79886541 + (A)n Simple_repeat Simple_repeat 1 28 0 217 286 0 0 chr11 68897120 68897169 -79886303 + MIR SINE MIR 117 165 -97 1830 196 0 3 chr11 68897495 68897807 -79885665 + AluJb SINE Alu 1 311 -1 209 288 0 0 chr11 68898268 68898334 -79885138 + (TAAA)n Simple_repeat Simple_repeat 1 66 0 23 33 0 0 chr11 68898532 68898562 -79884910 + AT_rich Low_complexity Low_complexity 1 30 0 2370 110 0 0 chr11 68899770 68900079 -79883393 + AluSq SINE Alu 1 309 -4 1407 167 78 35 chr11 68900606 68900888 -79882584 - AluJb SINE Alu -18 294 1 2200 110 0 13 chr11 68900898 68901208 -79882264 - AluY SINE Alu -5 306 1 742 254 57 5 chr11 68901273 68901466 -79882006 + MIR SINE MIR 14 216 -46 331 250 103 26 chr11 68901646 68901762 -79881710 + L2 LINE L2 3112 3236 -36 189 247 161 37 chr11 68901801 68901963 -79881509 - L2 LINE L2 -1492 1822 1641 758 251 141 0 chr11 68902396 68902623 -79880849 - MIR SINE MIR -1 261 3 300 276 88 21 chr11 68902631 68902791 -79880681 + MIR SINE MIR 16 186 -63 2276 84 13 10 chr11 68902974 68903272 -79880200 - AluSq SINE Alu -14 299 1 2215 108 0 0 chr11 68903472 68903758 -79879714 + AluSx SINE Alu 1 286 -26 869 200 5 67 chr11 68904997 68905207 -79878265 - AluSx SINE Alu -115 197 1 2241 92 0 3 chr11 68905402 68905695 -79877777 + AluY SINE Alu 1 292 -19 1078 136 0 7 chr11 68905703 68905858 -79877614 + AluSc SINE Alu 134 287 -22 1837 163 24 0 chr11 68906078 68906372 -79877100 - AluJb SINE Alu -11 301 1 870 150 0 7 chr11 68906376 68906529 -79876943 + L1MB8 LINE L1 6027 6178 0 237 319 98 34 chr11 68906537 68906741 -79876731 - L2 LINE L2 -874 2440 2224 374 305 51 0 chr11 68906792 68906910 -79876562 + MIR SINE MIR 50 173 -89 2118 117 41 0 chr11 68907099 68907390 -79876082 + AluSx SINE Alu 1 303 -9 247 260 226 0 chr11 68907658 68907804 -79875668 - L2 LINE L2 -159 3154 2976 2458 88 3 0 chr11 68907902 68908210 -79875262 + AluSp SINE Alu 1 309 -4 347 290 48 78 chr11 68908725 68908865 -79874607 + L1MEd LINE L1 683 826 -5293 1571 179 45 7 chr11 68908865 68909156 -79874316 + AluJo SINE Alu 1 302 -10 347 290 48 78 chr11 68909156 68909539 -79873933 + L1MEd LINE L1 826 1190 -4929 195 42 0 0 chr11 68909554 68909578 -79873894 + (TG)n Simple_repeat Simple_repeat 1 24 0 1734 31 5 0 chr11 68909578 68909773 -79873699 - AluY SINE Alu -33 278 83 234 289 163 0 chr11 68909829 68909995 -79873477 + L1PBa LINE L1 2341 2533 -4330 1201 128 15 46 chr11 68910327 68910522 -79872950 - AluJo SINE Alu -22 290 102 1222 259 148 5 chr11 68910529 68910969 -79872503 + L1MEd LINE L1 1230 1732 -4578 2964 112 62 2 chr11 68911011 68911450 -79872022 - MER4C LTR ERV1 0 465 1 333 188 59 47 chr11 68911497 68911582 -79871890 - L1MEc LINE L1 -5126 1270 1185 940 179 13 0 chr11 68911585 68911736 -79871736 - FRAM SINE Alu -30 146 1 2010 110 0 75 chr11 68911785 68912103 -79871369 - AluSx SINE Alu -18 294 1 1060 177 79 12 chr11 68912150 68912404 -79871068 + L1MEd LINE L1 1786 2056 -4254 893 170 0 20 chr11 68912407 68912554 -79870918 + FRAM SINE Alu 3 146 -30 325 227 93 20 chr11 68912596 68912746 -79870726 + L1MEd LINE L1 2046 2206 -4104 2538 52 0 0 chr11 68912797 68913087 -79870385 - AluY SINE Alu -21 290 1 1214 149 31 45 chr11 68913352 68913574 -79869898 + MER20 DNA MER1_type 1 219 0 2252 115 0 3 chr11 68914064 68914359 -79869113 + AluSc SINE Alu 1 294 -15 2067 118 0 34 chr11 68914853 68915176 -79868296 - AluSx SINE Alu 0 312 1 670 285 45 14 chr11 68916113 68916334 -79867138 + MIR SINE MIR 5 232 -30 361 189 131 49 chr11 68917093 68917215 -79866257 - MER5B DNA MER1_type 0 178 47 1262 161 40 70 chr11 68917215 68917488 -79865984 - AluJo SINE Alu -15 297 33 193 119 15 194 chr11 68917490 68917514 -79865958 + MER5B DNA MER1_type 119 146 -32 1953 156 3 0 chr11 68917514 68917827 -79865645 + AluSx SINE Alu 1 314 0 193 119 15 194 chr11 68917827 68917867 -79865605 + MER5B DNA MER1_type 146 173 -5 270 0 0 0 chr11 68918061 68918091 -79865381 + (ATG)n Simple_repeat Simple_repeat 2 31 0 2319 95 0 0 chr11 68918091 68918375 -79865097 - AluSg SINE Alu -26 284 1 614 63 13 0 chr11 68918400 68918479 -79864993 - AluJ/FLAM SINE Alu -226 86 7 394 298 20 13 chr11 68919194 68919345 -79864127 + MIR3 SINE MIR 36 187 -21 1509 164 18 36 chr11 68920126 68920260 -79863212 + AluJo SINE Alu 1 129 -183 2222 85 3 26 chr11 68920260 68920567 -79862905 + AluSq SINE Alu 3 302 -11 1509 164 18 36 chr11 68920567 68920706 -79862766 + AluJo SINE Alu 129 269 -43 200 226 0 38 chr11 68920807 68920860 -79862612 - MIR SINE MIR -122 86 36 2272 45 45 0 chr11 68921926 68922193 -79861279 - AluY SINE Alu -12 299 21 22 0 0 0 chr11 68923013 68923035 -79860437 + AT_rich Low_complexity Low_complexity 1 22 0 1865 161 21 0 chr11 68923361 68923652 -79859820 + AluJb SINE Alu 1 297 -15 2233 103 7 7 chr11 68923653 68923954 -79859518 + AluSx SINE Alu 5 301 -11 1007 94 0 0 chr11 68923957 68924084 -79859388 - AluJo/FLAM SINE Alu -185 127 1 3858 159 64 23 chr11 68924089 68924145 -79859327 + L1MB7 LINE L1 5271 5323 -861 2193 87 28 7 chr11 68924145 68924434 -79859038 + AluY SINE Alu 1 295 -16 3858 159 64 23 chr11 68924434 68925232 -79858240 + L1MB7 LINE L1 5323 6160 -24 1146 177 0 0 chr11 68925809 68925984 -79857488 + FAM SINE Alu 1 175 0 185 225 84 42 chr11 68926107 68926178 -79857294 - MIR3 SINE MIR -41 167 94 455 309 48 24 chr11 68926352 68926520 -79856952 + MIR SINE MIR 17 188 -74 2001 149 0 3 chr11 68926694 68926990 -79856482 - AluSx SINE Alu -17 295 1 406 202 54 55 chr11 68927166 68927317 -79856155 + MLT1C LTR MaLR 1 150 -250 2248 86 0 4 chr11 68927327 68927607 -79855865 + AluSx SINE Alu 21 299 -13 1557 122 34 4 chr11 68927709 68927947 -79855525 - AluSx SINE Alu -66 246 2 223 150 0 150 chr11 68927960 68927981 -79855491 + (A)n Simple_repeat Simple_repeat 1 24 -44 1469 89 9 56 chr11 68927981 68928194 -79855278 + AluY SINE Alu 1 203 -108 223 150 0 150 chr11 68928194 68928252 -79855220 + (A)n Simple_repeat Simple_repeat 23 68 0 263 81 0 0 chr11 68928270 68928307 -79855165 - tRNA-Lys-AAG tRNA tRNA -39 37 1 1596 70 9 9 chr11 68928340 68928568 -79854904 - LTR7 LTR ERV1 -2 448 221 17867 81 31 22 chr11 68928569 68931243 -79852229 - HERVH LTR ERV1 -5013 2700 1 3532 58 5 7 chr11 68931245 68931694 -79851778 - LTR7 LTR ERV1 -2 448 1 2480 65 0 0 chr11 68931700 68931992 -79851480 - AluY SINE Alu -19 292 1 2321 112 0 0 chr11 68931995 68932291 -79851181 - AluSx SINE Alu -16 296 1 380 221 16 66 chr11 68932293 68932415 -79851057 - MLT1J2 LTR MaLR -330 120 5 731 208 165 21 chr11 68932429 68932665 -79850807 - HAL1 LINE L1 -1101 1406 1137 1686 268 139 38 chr11 68932667 68933408 -79850064 - HAL1 LINE L1 -1516 991 142 2263 114 0 3 chr11 68933408 68933707 -79849765 - AluSx SINE Alu -14 298 1 1686 268 139 38 chr11 68933707 68933864 -79849608 - HAL1 LINE L1 -2365 142 2 1804 176 102 7 chr11 68933901 68934321 -79849151 - MLT1C LTR MaLR -7 460 1 236 296 102 0 chr11 68934478 68934576 -79848896 + MER103 DNA DNA 1 108 -58 1187 140 0 0 chr11 68934624 68934788 -79848684 - AluSg/x SINE Alu -17 295 132 1768 184 3 7 chr11 68935002 68935295 -79848177 - AluJb SINE Alu -20 292 1 2070 131 20 13 chr11 68935350 68935656 -79847816 + AluSx SINE Alu 4 311 -1 826 206 30 25 chr11 68935757 68935881 -79847591 + MER3 DNA MER1_type 6 133 -76 2441 85 0 3 chr11 68935881 68936175 -79847297 - AluSq SINE Alu -20 293 1 826 206 30 25 chr11 68936175 68936249 -79847223 + MER3 DNA MER1_type 133 205 -4 2636 216 63 10 chr11 68936435 68937161 -79846311 + L1ME1 LINE L1 5355 6119 -47 1868 128 0 33 chr11 68937162 68937468 -79846004 + AluSg SINE Alu 1 296 -14 463 181 29 38 chr11 68938120 68938225 -79845247 - MER5B DNA MER1_type 0 178 75 1132 185 5 0 chr11 68938234 68938434 -79845038 - MLT1B LTR MaLR -2 388 188 947 165 0 57 chr11 68938480 68938656 -79844816 - FAM SINE Alu -9 166 1 689 206 29 63 chr11 68938656 68938831 -79844641 - MLT1B LTR MaLR -205 169 1 297 200 53 53 chr11 68938831 68938906 -79844566 - MER5B DNA MER1_type -103 75 1 542 280 48 30 chr11 68939435 68939603 -79843869 - MIR SINE MIR -56 206 36 2335 79 10 0 chr11 68939724 68940014 -79843458 + AluY SINE Alu 1 293 -18 420 299 88 28 chr11 68940411 68940628 -79842844 - L2 LINE L2 -2447 867 638 260 244 24 0 chr11 68941155 68941237 -79842235 - L1MC4 LINE L1 -1344 6698 6615 2305 83 24 0 chr11 68941554 68941844 -79841628 - AluY SINE Alu -14 297 1 596 214 41 28 chr11 68942275 68942420 -79841052 + MIR SINE MIR 2 148 -114 2046 120 7 23 chr11 68942828 68943127 -79840345 - AluSx SINE Alu -18 294 1 189 0 0 0 chr11 68943257 68943278 -79840194 + (A)n Simple_repeat Simple_repeat 1 21 0 328 261 192 23 chr11 68943334 68943464 -79840008 - L3 LINE CR1 -3 1574 1423 428 279 42 48 chr11 68943632 68943797 -79839675 - MIR3 SINE MIR -8 200 37 809 147 0 0 chr11 68943995 68944104 -79839368 + AluJo/FLAM SINE Alu 1 109 -203 511 133 0 24 chr11 68944104 68944187 -79839285 + FLAM SINE Alu 49 129 -14 394 187 27 0 chr11 68944322 68944397 -79839075 - MER46C DNA MER2_type -7 331 255 304 200 12 59 chr11 68944575 68944660 -79838812 - MIR SINE MIR -79 129 49 242 182 0 0 chr11 68945233 68945277 -79838195 + MIR SINE MIR 107 150 -112 2124 137 0 7 chr11 68945316 68945616 -79837856 + AluSx SINE Alu 1 298 -14 2139 116 27 0 chr11 68945620 68945913 -79837559 + AluSg SINE Alu 1 301 -9 673 199 35 35 chr11 68945987 68946097 -79837375 + FLAM_A SINE Alu 1 110 -201 1975 125 3 30 chr11 68946097 68946369 -79837103 + AluSq SINE Alu 1 279 -34 282 29 0 0 chr11 68946369 68946404 -79837068 + (TC)n Simple_repeat Simple_repeat 1 35 0 * 288 0 0 0 chr11 68946403 68946435 -79837037 + (CA)n Simple_repeat Simple_repeat 1 32 0 1975 125 3 30 chr11 68946404 68946459 -79837013 + AluSq SINE Alu 279 289 -24 673 199 35 35 chr11 68946459 68946489 -79836983 + FLAM_A SINE Alu 109 141 -170 2058 128 3 17 chr11 68946497 68946787 -79836685 + AluSg SINE Alu 1 286 -24 2063 121 6 19 chr11 68946794 68947109 -79836363 + AluSx SINE Alu 1 311 -1 2279 109 0 0 chr11 68947111 68947404 -79836068 + AluY SINE Alu 1 293 -18 644 177 48 32 chr11 68947407 68947531 -79835941 + FLAM_A SINE Alu 1 126 -16 395 218 0 79 chr11 68947538 68947639 -79835833 + MIR SINE MIR 13 105 -157 1096 275 19 3 chr11 68947695 68948011 -79835461 + MER20B DNA MER1_type 97 417 -366 681 202 0 0 chr11 68948063 68948192 -79835280 + FLAM_C SINE Alu 14 142 -1 2088 137 0 10 chr11 68948304 68948611 -79834861 - AluSx SINE Alu -8 304 1 223 27 27 27 chr11 68948621 68948658 -79834814 + (TTA)n Simple_repeat Simple_repeat 2 38 0 863 99 8 0 chr11 68948658 68948779 -79834693 - AluJb SINE Alu -190 122 1 454 309 165 16 chr11 68949176 68949545 -79833927 + L2 LINE L2 2290 2713 -601 2096 125 3 0 chr11 68949545 68949834 -79833638 + AluSx SINE Alu 1 290 -22 2221 95 0 3 chr11 68949839 68950134 -79833338 + AluSg SINE Alu 2 295 -15 232 176 29 15 chr11 68950279 68950347 -79833125 + (TGGA)n Simple_repeat Simple_repeat 4 72 0 2088 89 0 0 chr11 68950357 68950616 -79832856 - AluY SINE Alu -52 259 1 874 130 0 36 chr11 68951269 68951398 -79832074 + AluJo/FLAM SINE Alu 1 126 -186 1964 144 0 33 chr11 68951398 68951562 -79831910 - AluSx SINE Alu -16 296 145 2269 112 0 3 chr11 68951562 68951865 -79831607 - AluSx SINE Alu -6 306 5 1964 144 0 33 chr11 68951865 68952006 -79831466 - AluSx SINE Alu -167 145 1 2344 74 3 27 chr11 68952019 68952317 -79831155 - AluY SINE Alu -20 291 1 1897 110 125 15 chr11 68952383 68952396 -79831076 + MER83C LTR ERV1 1 11 -362 4670 65 8 3 chr11 68952396 68952984 -79830488 - LTR10C LTR ERV1 0 591 1 1897 110 125 15 chr11 68952984 68953306 -79830166 + MER83C LTR ERV1 11 373 0 2414 72 27 0 chr11 68953371 68953664 -79829808 - AluY SINE Alu -10 301 1 207 0 0 0 chr11 68953779 68953802 -79829670 + (A)n Simple_repeat Simple_repeat 1 23 0 811 227 62 39 chr11 68953820 68954080 -79829392 + MLT1C LTR MaLR 202 467 0 2460 64 0 10 chr11 68954449 68954745 -79828727 + AluY SINE Alu 7 299 -12 431 265 165 37 chr11 68954745 68955007 -79828465 + MLT1J2 LTR MaLR 104 404 -46 2081 127 3 3 chr11 68955014 68955306 -79828166 - AluSx SINE Alu -20 292 1 2192 218 113 59 chr11 68955367 68955400 -79828072 + HAL1 LINE L1 1423 1453 -1054 2237 123 0 3 chr11 68955400 68955701 -79827771 + AluSx SINE Alu 1 300 -12 2192 218 113 59 chr11 68955701 68956516 -79826956 + HAL1 LINE L1 1453 2222 -285 1822 170 0 38 chr11 68956516 68956660 -79826812 + AluJo SINE Alu 1 149 -163 2316 110 0 10 chr11 68956660 68956970 -79826502 + AluSc SINE Alu 1 307 -2 1822 170 0 38 chr11 68956970 68957142 -79826330 + AluJo SINE Alu 149 305 -7 1906 170 3 19 chr11 68957148 68957465 -79826007 + AluJo SINE Alu 1 312 0 2192 218 113 59 chr11 68957465 68957563 -79825909 + HAL1 LINE L1 2226 2429 -78 2150 123 3 3 chr11 68957586 68957887 -79825585 - AluSx SINE Alu -11 301 1 1464 153 36 55 chr11 68958272 68958579 -79824893 + AluSx SINE Alu 1 301 -11 230 0 33 0 chr11 68959069 68959099 -79824373 + (CA)n Simple_repeat Simple_repeat 2 32 0 22 35 0 0 chr11 68959351 68959380 -79824092 + AT_rich Low_complexity Low_complexity 1 29 0 2354 78 10 0 chr11 68959540 68959836 -79823636 - AluY SINE Alu -11 300 2 2556 69 3 0 chr11 68959846 68960150 -79823322 - AluSx SINE Alu -7 305 1 787 279 28 47 chr11 68960620 68960753 -79822719 + L1ME4a LINE L1 5543 5677 -444 1520 199 60 0 chr11 68960753 68961034 -79822438 + AluSx SINE Alu 1 298 -14 787 279 28 47 chr11 68961034 68961187 -79822285 + L1ME4a LINE L1 5677 5823 -298 2100 157 0 0 chr11 68961187 68961499 -79821973 + AluSx SINE Alu 1 312 0 787 279 28 47 chr11 68961499 68961570 -79821902 + L1ME4a LINE L1 5823 5894 -227 1118 184 20 0 chr11 68961582 68961778 -79821694 - AluJo SINE Alu 0 312 113 391 333 58 0 chr11 68961785 68961941 -79821531 + L1ME4a LINE L1 5934 6098 -23 334 189 178 71 chr11 68962258 68962387 -79821085 + L1ME4a LINE L1 5654 5807 -314 2018 110 43 0 chr11 68962387 68962668 -79820804 - AluSg SINE Alu -17 293 1 334 189 178 71 chr11 68962668 68962707 -79820765 + L1ME4a LINE L1 5807 5840 -281 1917 161 0 16 chr11 68962708 68963018 -79820454 + AluJo SINE Alu 1 305 -7 2081 125 44 3 chr11 68963019 68963316 -79820156 + AluSg SINE Alu 1 309 -1 1332 141 5 5 chr11 68963316 68963514 -79819958 + AluSg/x SINE Alu 102 299 -11 2537 77 3 0 chr11 68963514 68963824 -79819648 + AluSp SINE Alu 1 311 -2 904 121 0 0 chr11 68963876 68964000 -79819472 + AluJb SINE Alu 11 134 -178 2395 86 0 7 chr11 68964009 68964312 -79819160 + AluSc SINE Alu 5 305 -4 313 293 40 20 chr11 68964449 68964548 -79818924 - MIR SINE MIR -148 114 14 24 0 0 0 chr11 68965277 68965301 -79818171 + AT_rich Low_complexity Low_complexity 1 24 0 2125 115 3 7 chr11 68965678 68965974 -79817498 + AluSx SINE Alu 1 295 -17 248 224 52 0 chr11 68966013 68966071 -79817401 + Charlie8 DNA MER1_type 1368 1428 -989 211 271 212 7 chr11 68967531 68967682 -79815790 + L2 LINE L2 3126 3307 -6 842 203 34 0 chr11 68967832 68968009 -79815463 - MER5A DNA MER1_type -4 185 3 208 181 60 172 chr11 68970382 68970498 -79812974 + MIR3 SINE MIR 100 202 -6 2249 119 0 0 chr11 68970557 68970859 -79812613 - AluSx SINE Alu -10 302 1 2345 84 14 0 chr11 68971058 68971355 -79812117 + AluSq SINE Alu 1 301 -12 340 275 107 21 chr11 68971538 68971702 -79811770 - MIR SINE MIR -63 145 4 768 251 141 0 chr11 68971706 68971933 -79811539 + MIR SINE MIR 3 261 -1 267 324 205 26 chr11 68972217 68972529 -79810943 + L2 LINE L2 1455 1822 -1492 363 254 127 21 chr11 68972542 68972684 -79810788 - L2 LINE L2 -4 3268 3112 188 264 94 0 chr11 68972773 68972826 -79810646 - L2 LINE L2 -246 3026 2969 826 246 54 20 chr11 68972854 68973057 -79810415 - MIR SINE MIR -39 223 14 2314 98 0 22 chr11 68973122 68973440 -79810032 + AluY SINE Alu 1 311 0 1378 184 13 35 chr11 68973446 68973762 -79809710 + AluSx SINE Alu 3 311 -1 1514 289 80 42 chr11 68973771 68974462 -79809010 - L2 LINE L2 -411 2903 2187 1546 130 0 5 chr11 68974546 68974754 -79808718 + AluSg/x SINE Alu 89 295 -17 832 219 134 3 chr11 68974822 68975105 -79808367 + MER33 DNA MER1_type 5 324 0 2108 81 10 29 chr11 68975155 68975462 -79808010 + AluSq SINE Alu 1 301 -12 1792 134 38 10 chr11 68975548 68975838 -79807634 + AluJb SINE Alu 1 298 -14 1028 280 50 45 chr11 68975972 68976091 -79807381 + L1ME LINE L1 5263 5380 -790 1359 160 75 85 chr11 68976091 68976385 -79807087 + AluJo SINE Alu 1 291 -11 2078 113 10 0 chr11 68976387 68976679 -79806793 + AluSx SINE Alu 3 297 -15 2116 107 0 10 chr11 68976685 68976985 -79806487 + AluSg SINE Alu 7 303 -7 1028 280 50 45 chr11 68976985 68977388 -79806084 + L1ME LINE L1 5384 5737 -433 333 212 104 118 chr11 68977435 68977628 -79805844 + L1MC5 LINE L1 7481 7672 -289 1501 176 10 17 chr11 68977628 68977917 -79805555 + AluJb SINE Alu 1 287 -25 333 212 104 118 chr11 68977917 68977935 -79805537 + L1MC5 LINE L1 7672 7689 -272 2092 113 7 0 chr11 68977937 68978247 -79805225 + AluSx SINE Alu 1 312 0 2248 71 3 0 chr11 68978512 68978809 -79804663 - AluSg SINE Alu -11 299 2 788 208 45 11 chr11 68981629 68981807 -79801665 - MER3 DNA MER1_type -25 184 1 451 212 6 103 chr11 68982124 68982289 -79801183 + MIR SINE MIR 67 215 -47 2170 100 7 7 chr11 68982649 68982950 -79800522 + AluSx SINE Alu 1 301 -11 2128 92 6 16 chr11 68982992 68983306 -79800166 + AluY SINE Alu 1 311 0 21 0 0 0 chr11 68983319 68983340 -79800132 + AT_rich Low_complexity Low_complexity 1 21 0 2003 126 3 7 chr11 68983762 68984063 -79799409 + AluSx SINE Alu 3 302 -10 2076 91 3 26 chr11 68984724 68985032 -79798440 + AluSq SINE Alu 1 301 -12 609 91 23 0 chr11 68985043 68985131 -79798341 + AluJ/FLAM SINE Alu 11 100 -212 2155 84 0 3 chr11 68985260 68985546 -79797926 - AluSx SINE Alu -7 305 21 440 202 54 55 chr11 68985556 68985707 -79797765 - MLT1C LTR MaLR -250 140 1 1974 139 0 0 chr11 68985883 68986178 -79797294 + AluSx SINE Alu 1 295 -17 463 309 48 24 chr11 68986352 68986520 -79796952 - MIR SINE MIR -74 188 17 186 225 84 42 chr11 68986694 68986765 -79796707 + MIR3 SINE MIR 94 167 -41 1120 177 0 0 chr11 68986887 68987062 -79796410 - FAM SINE Alu 0 175 1 4084 159 67 28 chr11 68987638 68988437 -79795035 - L1MB7 LINE L1 -24 6160 5324 2089 87 28 3 chr11 68988437 68988725 -79794747 - AluY SINE Alu -16 295 1 4084 159 67 28 chr11 68988725 68988782 -79794690 - L1MB7 LINE L1 -860 5324 5271 911 94 0 8 chr11 68988787 68988915 -79794557 + AluJo/FLAM SINE Alu 1 127 -185 2030 130 0 0 chr11 68988918 68989219 -79794253 - AluSg SINE Alu -9 301 1 307 152 108 120 chr11 68989236 68989342 -79794130 - L1MB7 LINE L1 -864 5282 5176 2209 98 0 3 chr11 68989342 68989647 -79793825 - AluY SINE Alu -7 304 1 307 152 108 120 chr11 68989647 68989659 -79793813 - L1MB7 LINE L1 -970 5176 5165 2228 101 3 0 chr11 68989659 68989965 -79793507 - AluSx SINE Alu -5 307 1 307 152 108 120 chr11 68989965 68990003 -79793469 - L1MB7 LINE L1 -981 5165 5127 2493 43 0 3 chr11 68990946 68991251 -79792221 - AluY SINE Alu -7 304 1 950 224 0 15 chr11 68991422 68991618 -79791854 - MIR SINE MIR -34 228 36 207 0 0 0 chr11 68993332 68993355 -79790117 + (T)n Simple_repeat Simple_repeat 1 23 0 309 241 71 71 chr11 68994165 68994277 -79789195 + MIR3 SINE MIR 83 171 -37 1640 123 12 0 chr11 68996934 68997178 -79786294 + AluSx SINE Alu 58 304 -8 296 286 218 0 chr11 68997302 68997435 -79786037 + MIR SINE MIR 35 196 -66 843 103 44 29 chr11 68997440 68997576 -79785896 + MLT1A1 LTR MaLR 1 138 -227 1327 92 5 0 chr11 68997576 68997761 -79785711 - AluSp SINE Alu -3 310 125 284 0 0 27 chr11 68997762 68997799 -79785673 + (TTA)n Simple_repeat Simple_repeat 3 38 0 7482 30 5 2 chr11 68997799 68999369 -79784103 - L1PA4 LINE L1 -18 6137 4563 432 204 117 0 chr11 68999369 68999472 -79784000 - L1MB7 LINE L1 -1384 4762 4648 632 172 123 0 chr11 68999472 68999594 -79783878 - AluJb SINE Alu -12 300 164 564 115 0 23 chr11 68999750 68999837 -79783635 + AluJ/FLAM SINE Alu 1 85 -227 342 305 110 59 chr11 68999969 69000069 -79783403 + L1ME4a LINE L1 5461 5554 -567 1740 110 73 15 chr11 69000069 69000342 -79783130 - AluSx SINE Alu -23 289 1 342 305 110 59 chr11 69000342 69000477 -79782995 + L1ME4a LINE L1 5554 5708 -413 411 227 36 55 chr11 69000478 69000588 -79782884 - MIR SINE MIR -1 261 154 266 225 123 38 chr11 69000652 69000888 -79782584 + L1ME4a LINE L1 5711 5966 -155 1188 204 0 12 chr11 69000937 69001182 -79782290 - AluJb SINE Alu -70 242 1 587 276 22 93 chr11 69001183 69001313 -79782159 + L1 LINE L1 3912 4050 -2096 882 145 0 0 chr11 69001313 69001444 -79782028 - FLAM_C SINE Alu -2 131 1 587 276 22 93 chr11 69001444 69001592 -79781880 + L1 LINE L1 4050 4154 -1992 2145 119 0 0 chr11 69001592 69001887 -79781585 + AluSx SINE Alu 2 296 -16 587 276 22 93 chr11 69001887 69002017 -79781455 + L1 LINE L1 4154 4292 -1854 308 313 17 35 chr11 69002019 69002134 -79781338 + L1 LINE L1 4369 4481 -1665 565 244 30 36 chr11 69002143 69002311 -79781161 + L1M4 LINE L1 1 167 -5724 702 255 82 22 chr11 69002311 69002542 -79780930 - MLT1I LTR MaLR -146 263 19 421 267 133 7 chr11 69002662 69002812 -79780660 + L1M4 LINE L1 4281 4449 -1521 198 0 0 0 chr11 69002814 69002836 -79780636 + (T)n Simple_repeat Simple_repeat 1 22 0 1980 123 6 22 chr11 69002951 69003268 -79780204 - AluSx SINE Alu 0 312 1 1946 111 3 32 chr11 69003346 69003661 -79779811 + AluSg1 SINE Alu 1 306 -3 863 113 0 0 chr11 69004569 69004693 -79778779 - AluSg/x SINE Alu -14 298 175 2260 90 3 0 chr11 69005647 69005948 -79777524 + AluSp SINE Alu 1 302 -11 490 308 31 8 chr11 69007132 69007262 -79776210 - MIR SINE MIR -108 154 22 1696 107 24 54 chr11 69007397 69007695 -79775777 + AluJo SINE Alu 9 297 -15 769 157 92 26 chr11 69008330 69008483 -79774989 + FRAM SINE Alu 1 163 -3 1520 159 19 62 chr11 69010498 69010640 -79772832 + AluJb SINE Alu 3 149 -163 2150 97 20 0 chr11 69010640 69010939 -79772533 + AluSq SINE Alu 1 305 -8 1916 94 94 0 chr11 69010945 69011222 -79772250 + AluSq SINE Alu 1 303 -10 1520 159 19 62 chr11 69011222 69011380 -79772092 + AluJb SINE Alu 154 297 -15 357 82 0 0 chr11 69011655 69011704 -79771768 + (CA)n Simple_repeat Simple_repeat 2 50 0 1410 114 134 15 chr11 69011766 69012028 -79771444 + AluSg1 SINE Alu 1 293 -16 2068 118 3 3 chr11 69012696 69013000 -79770472 + AluSx SINE Alu 3 306 -6 772 193 165 0 chr11 69013061 69013237 -79770235 + MER3 DNA MER1_type 1 205 -4 2116 112 0 0 chr11 69013354 69013648 -79769824 - AluSx SINE Alu -18 294 1 186 318 171 23 chr11 69013785 69013873 -79769599 - L2 LINE L2 -4 3268 3168 2341 76 0 7 chr11 69014441 69014745 -79768727 + AluY SINE Alu 1 302 -9 1663 131 52 17 chr11 69014750 69015041 -79768431 + AluSx SINE Alu 1 301 -11 1002 328 125 28 chr11 69015123 69015814 -79767658 - L2 LINE L2 -192 3080 2301 2046 110 3 31 chr11 69015814 69016131 -79767341 + AluSg SINE Alu 1 308 -2 1002 328 125 28 chr11 69016131 69016228 -79767244 - L2 LINE L2 -971 2301 2215 234 204 286 10 chr11 69016228 69016326 -79767146 - Charlie5 DNA MER1_type -27 2585 2461 24 0 0 29 chr11 69016425 69016441 -79767031 + AT_rich Low_complexity Low_complexity 1 16 -18 2039 122 0 0 chr11 69016441 69016737 -79766735 - AluSx SINE Alu -16 296 1 24 0 0 29 chr11 69016737 69016755 -79766717 + AT_rich Low_complexity Low_complexity 16 34 0 281 81 0 0 chr11 69016907 69016944 -79766528 - MER20 DNA MER1_type -65 154 118 237 83 0 0 chr11 69017018 69017054 -79766418 + (A)n Simple_repeat Simple_repeat 1 36 0 2078 92 7 23 chr11 69017064 69017370 -79766102 + AluSp SINE Alu 1 301 -12 1444 163 74 0 chr11 69017371 69017641 -79765831 + AluJb SINE Alu 1 290 -12 1344 199 3 49 chr11 69017652 69017680 -79765792 + AluJo SINE Alu 1 29 -283 2224 94 3 3 chr11 69017680 69017988 -79765484 - AluSx SINE Alu -4 308 1 1344 199 3 49 chr11 69017988 69018285 -79765187 + AluJo SINE Alu 29 311 -1 429 243 27 27 chr11 69018292 69018403 -79765069 + L1ME1 LINE L1 5991 6101 -65 1883 138 3 30 chr11 69018420 69018724 -79764748 + AluSx SINE Alu 3 298 -14 1851 137 3 17 chr11 69018807 69018944 -79764528 + AluSp SINE Alu 1 138 -175 2184 96 0 13 chr11 69018944 69019247 -79764225 + AluY SINE Alu 1 299 -12 1851 137 3 17 chr11 69019247 69019409 -79764063 + AluSp SINE Alu 138 296 -17 548 253 183 8 chr11 69019495 69019802 -79763670 + L2 LINE L2 2692 3046 -267 1626 164 34 0 chr11 69019804 69020096 -79763376 + AluJb SINE Alu 1 302 -10 2062 107 7 0 chr11 69020098 69020388 -79763084 + AluSq SINE Alu 2 293 -20 1103 127 0 0 chr11 69020389 69020554 -79762918 + AluSg/x SINE Alu 132 296 -14 1542 157 3 58 chr11 69020563 69020876 -79762596 + AluJb SINE Alu 1 296 -16 2242 68 3 17 chr11 69020876 69021171 -79762301 - AluY SINE Alu -20 291 1 734 238 13 0 chr11 69021190 69021341 -79762131 + FRAM SINE Alu 1 151 -25 632 167 33 25 chr11 69021350 69021470 -79762002 - FLAM_A SINE Alu -12 121 1 334 148 0 0 chr11 69021515 69021569 -79761903 + Alu SINE Alu 247 300 0 726 103 169 0 chr11 69021583 69021719 -79761753 - Tigger2a DNA MER2_type -54 380 222 2121 123 0 0 chr11 69021719 69022019 -79761453 + AluSx SINE Alu 1 300 -12 1117 122 0 39 chr11 69022019 69022199 -79761273 - Tigger2a DNA MER2_type -261 173 1 501 176 49 10 chr11 69022553 69022655 -79760817 - FLAM_A SINE Alu -34 108 3 447 251 322 10 chr11 69022820 69022989 -79760483 - HAL1 LINE L1 -15 2492 2377 2048 68 61 4 chr11 69022989 69023267 -79760205 + AluY SINE Alu 1 294 -17 447 251 322 10 chr11 69023267 69023392 -79760080 - HAL1 LINE L1 -130 2377 2106 1351 186 122 15 chr11 69023393 69023721 -79759751 + MLT1A1 LTR MaLR 1 363 -2 2303 67 0 3 chr11 69023734 69024032 -79759440 + AluY SINE Alu 1 297 -14 466 242 10 0 chr11 69024037 69024136 -79759336 - HAL1 LINE L1 -623 1884 1785 587 191 26 0 chr11 69024358 69024473 -79758999 - AluSg/x SINE Alu -26 286 169 2281 77 0 0 chr11 69024493 69024800 -79758672 - AluY SINE Alu -34 277 1 2105 116 0 7 chr11 69024802 69025095 -79758377 - AluSq SINE Alu -22 291 1 754 207 30 24 chr11 69025505 69025669 -79757803 + FRAM SINE Alu 2 166 0 886 238 22 0 chr11 69025848 69026033 -79757439 - AluJo SINE Alu -38 274 86 2040 119 41 0 chr11 69026084 69026377 -79757095 + AluSx SINE Alu 1 305 -7 1942 135 10 0 chr11 69026559 69026848 -79756624 - AluSq SINE Alu -20 293 2 1685 183 3 14 chr11 69026854 69027144 -79756328 - AluJb SINE Alu -25 287 1 24 0 0 0 chr11 69027150 69027174 -79756298 + AT_rich Low_complexity Low_complexity 1 24 0 2083 98 14 14 chr11 69027174 69027460 -79756012 - AluSg SINE Alu -24 286 1 247 299 180 16 chr11 69027499 69027693 -79755779 + L2 LINE L2 3088 3313 0 259 122 98 0 chr11 69028118 69028159 -79755313 + L2 LINE L2 3222 3266 -6 202 170 38 38 chr11 69029153 69029206 -79754266 + GA-rich Low_complexity Low_complexity 4 56 0 216 185 0 0 chr11 69031443 69031497 -79751975 + (CAG)n Simple_repeat Simple_repeat 2 55 0 23 0 0 0 chr11 69034200 69034223 -79749249 + AT_rich Low_complexity Low_complexity 1 23 0 683 189 0 0 chr11 69034358 69034485 -79748987 - MER46A DNA MER2_type -62 174 48 21 0 0 0 chr11 69034941 69034962 -79748510 + AT_rich Low_complexity Low_complexity 1 21 0 1885 101 58 0 chr11 69037991 69038269 -79745203 + AluSq SINE Alu 1 294 -19 897 185 133 14 chr11 69038847 69039058 -79744414 - AluJo SINE Alu -23 289 54 2349 81 0 10 chr11 69039058 69039353 -79744119 + AluSx SINE Alu 1 292 -20 1500 171 18 18 chr11 69039465 69039739 -79743733 - AluJo SINE Alu -23 289 16 571 62 12 0 chr11 69039759 69039839 -79743633 - Alu SINE Alu -3 306 226 404 40 0 0 chr11 69039948 69039998 -79743474 + AluSp/q SINE Alu 242 291 -22 2153 69 3 28 chr11 69040027 69040317 -79743155 + AluY SINE Alu 29 311 0 1709 117 0 26 chr11 69040689 69040979 -79742493 - AluSc SINE Alu 0 309 52 202 252 7 73 chr11 69041271 69041422 -79742050 + C-rich Low_complexity Low_complexity 2 142 0 2284 91 3 36 chr11 69041584 69041754 -79741718 - AluSx SINE Alu -14 298 124 192 111 0 0 chr11 69041754 69041790 -79741682 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 2199 99 3 0 chr11 69041790 69042074 -79741398 - AluSp SINE Alu -28 285 1 2284 91 3 36 chr11 69042074 69042210 -79741262 - AluSx SINE Alu -186 126 1 1652 160 48 27 chr11 69042211 69042446 -79741026 - L1MD1 LINE L1 -414 5828 5582 2220 121 7 0 chr11 69042446 69042753 -79740719 + AluSg SINE Alu 1 309 -1 1652 160 48 27 chr11 69042753 69042854 -79740618 - L1MD1 LINE L1 -660 5582 5485 * 2088 244 29 26 chr11 69042851 69043474 -79739998 - L1MD1 LINE L1 -1139 5007 4380 1569 203 0 28 chr11 69043474 69043795 -79739677 + AluSx SINE Alu 1 312 0 2088 244 29 26 chr11 69043795 69043887 -79739585 - L1MD1 LINE L1 -1766 4380 4290 2426 68 0 7 chr11 69043887 69044183 -79739289 - AluY SINE Alu -17 294 1 189 0 0 0 chr11 69044183 69044204 -79739268 + (T)n Simple_repeat Simple_repeat 1 21 0 577 241 0 29 chr11 69044204 69044341 -79739131 - FLAM_C SINE Alu 0 133 1 1406 195 7 0 chr11 69044430 69044727 -79738745 - AluY SINE Alu -12 299 1 2180 129 0 22 chr11 69044935 69045246 -79738226 - AluSx SINE Alu -8 304 1 1110 127 9 45 chr11 69045246 69045466 -79738006 + L1MD1 LINE L1 5910 6121 -121 2213 88 3 13 chr11 69045466 69045771 -79737701 - AluSg SINE Alu -8 302 1 299 62 42 0 chr11 69045771 69045819 -79737653 - Alu SINE Alu -249 50 1 416 143 0 88 chr11 69045825 69045916 -79737556 - AluS SINE Alu -229 84 2 736 93 76 0 chr11 69045918 69046036 -79737436 + L1MD1 LINE L1 6108 6234 -8 2322 94 6 25 chr11 69046037 69046355 -79737117 + AluSx SINE Alu 1 312 0 1906 181 3 0 chr11 69046370 69046679 -79736793 + AluJo SINE Alu 3 312 0 2304 117 10 0 chr11 69046682 69046991 -79736481 + AluSx SINE Alu 1 312 0 274 29 0 0 chr11 69047214 69047248 -79736224 - MLT1D LTR MaLR -20 485 452 2376 99 0 0 chr11 69047478 69047772 -79735700 - AluSx SINE Alu -18 294 1 1843 174 6 37 chr11 69047798 69048119 -79735353 + AluJo SINE Alu 1 311 -1 562 204 19 118 chr11 69048133 69048274 -79735198 - LTR41 LTR ERVL -1 772 669 1971 166 3 6 chr11 69048274 69048587 -79734885 + AluJb SINE Alu 1 312 0 562 204 19 118 chr11 69048587 69048715 -79734757 - LTR41 LTR ERVL -104 669 530 1560 118 0 0 chr11 69049202 69049413 -79734059 + AluSp SINE Alu 1 211 -102 440 155 0 0 chr11 69049740 69049824 -79733648 - L1M4 LINE L1 -1314 4832 4749 2275 92 10 0 chr11 69049831 69050123 -79733349 - AluSp SINE Alu -18 295 1 1520 187 60 0 chr11 69050259 69050393 -79733079 + AluSq SINE Alu 1 126 -187 2519 61 3 7 chr11 69050393 69050703 -79732769 + AluY SINE Alu 1 309 -2 1520 187 60 0 chr11 69050703 69050852 -79732620 + AluSq SINE Alu 126 301 -12 194 61 0 30 chr11 69050932 69050965 -79732507 + (CAAAAA)n Simple_repeat Simple_repeat 4 35 0 898 221 140 81 chr11 69050965 69051210 -79732262 - L1MC/D LINE L1 -2067 5741 5512 2207 98 0 84 chr11 69051210 69051545 -79731927 - AluSp SINE Alu -5 308 2 2389 91 3 3 chr11 69051547 69051856 -79731616 - AluSq SINE Alu -4 309 1 898 221 140 81 chr11 69051856 69051953 -79731519 - L1MC/D LINE L1 -2296 5512 5422 311 162 54 27 chr11 69051953 69052027 -79731445 - MER116 DNA Mariner -4 76 1 898 221 140 81 chr11 69052027 69052101 -79731371 - L1MC/D LINE L1 -2386 5422 5296 2552 62 0 7 chr11 69052133 69052438 -79731034 - AluY SINE Alu -8 303 1 342 41 0 20 chr11 69052448 69052497 -79730975 - AluY SINE Alu -252 48 1 2197 133 0 3 chr11 69052606 69052914 -79730558 - AluJb SINE Alu -5 307 1 336 200 14 0 chr11 69052928 69052998 -79730474 - L1MC4a LINE L1 -504 7304 7234 2016 88 42 18 chr11 69052998 69053282 -79730190 + AluSc SINE Alu 1 291 -18 399 239 0 11 chr11 69053299 69053391 -79730081 - MLT1F1 LTR MaLR -442 125 35 988 170 9 31 chr11 69053400 69053623 -79729849 - L1MC3 LINE L1 -688 7097 6880 2463 66 0 13 chr11 69053632 69053935 -79729537 - AluY SINE Alu -12 299 1 1043 183 6 11 chr11 69053935 69054110 -79729362 - FRAM SINE Alu -6 170 1 2424 80 0 0 chr11 69054114 69054414 -79729058 - AluSx SINE Alu -12 300 1 261 118 0 0 chr11 69054460 69054511 -79728961 + (TA)n Simple_repeat Simple_repeat 1 51 0 806 119 0 0 chr11 69054641 69054750 -79728722 + AluSg/x SINE Alu 186 294 -15 417 259 66 42 chr11 69054828 69054994 -79728478 + L1MEd LINE L1 239 408 -5711 1775 191 52 9 chr11 69055148 69055494 -79727978 + MLT1A1 LTR MaLR 5 365 0 24 77 0 0 chr11 69055843 69055895 -79727577 + AT_rich Low_complexity Low_complexity 1 52 0 679 109 8 17 chr11 69056057 69056176 -79727296 + L1MB4 LINE L1 6063 6180 0 275 316 10 0 chr11 69056189 69056287 -79727185 + L1 LINE L1 4032 4130 -2016 911 194 45 0 chr11 69056663 69056885 -79726587 - L1M4c LINE L1 -2597 3785 3554 2312 97 0 3 chr11 69056899 69057197 -79726275 - AluY SINE Alu -14 297 1 332 143 0 104 chr11 69057197 69057274 -79726198 + Tigger1 DNA MER2_type 2 70 -2348 1327 53 0 0 chr11 69057274 69057426 -79726046 + AluY SINE Alu 145 296 -15 2115 133 47 0 chr11 69057426 69057764 -79725708 + Tigger1 DNA MER2_type 296 649 -1769 1632 143 4 8 chr11 69057764 69058015 -79725457 + AluJb SINE Alu 1 250 -62 4485 107 35 57 chr11 69058034 69058616 -79724856 + Tigger1 DNA MER2_type 1658 2251 -167 2472 83 0 19 chr11 69058616 69058928 -79724544 - AluSx SINE Alu -6 306 1 4485 107 35 57 chr11 69058928 69059020 -79724452 + Tigger1 DNA MER2_type 2251 2315 -103 2145 76 58 0 chr11 69059020 69059297 -79724175 - AluSq SINE Alu -20 293 1 4485 107 35 57 chr11 69059297 69059398 -79724074 + Tigger1 DNA MER2_type 2315 2417 -1 2292 220 26 37 chr11 69059405 69059653 -79723819 - L1M4c LINE L1 -2832 3550 3301 2191 101 0 18 chr11 69059653 69059961 -79723511 - AluSc SINE Alu 0 303 1 2292 220 26 37 chr11 69059961 69060393 -79723079 - L1M4c LINE L1 -3081 3301 2876 324 155 0 28 chr11 69060391 69060462 -79723010 - L1M4c LINE L1 -3885 2499 2431 * 1758 179 0 7 chr11 69060464 69060743 -79722729 - AluJb SINE Alu -26 286 10 2047 97 4 0 chr11 69060760 69061018 -79722454 - AluSp SINE Alu -16 297 39 797 156 11 22 chr11 69061390 69061441 -79722031 + CT-rich Low_complexity Low_complexity 4 54 -126 2188 101 31 3 chr11 69061441 69061727 -79721745 - AluSg SINE Alu -16 294 1 797 156 11 22 chr11 69061727 69061854 -79721618 + CT-rich Low_complexity Low_complexity 54 180 0 2272 109 30 0 chr11 69061871 69062173 -79721299 - AluSx SINE Alu -1 311 1 1919 173 3 10 chr11 69062299 69062611 -79720861 + AluJo SINE Alu 1 310 -2 2302 109 0 0 chr11 69062845 69063147 -79720325 + AluSx SINE Alu 2 303 -9 2480 194 34 109 chr11 69063147 69063320 -79720152 + L1ME1 LINE L1 5163 5348 -818 2261 119 3 3 chr11 69063320 69063632 -79719840 + AluSx SINE Alu 1 312 0 2480 194 34 109 chr11 69063632 69063745 -79719727 + L1ME1 LINE L1 5348 5468 -698 1135 142 0 0 chr11 69063745 69063907 -79719565 + U1 snRNA snRNA 3 164 -1 2480 194 34 109 chr11 69063907 69063919 -79719553 + L1ME1 LINE L1 5468 5479 -687 2326 104 0 19 chr11 69063919 69064235 -79719237 - AluSg SINE Alu 0 310 1 2480 194 34 109 chr11 69064235 69064635 -79718837 + L1ME1 LINE L1 5479 5908 -258 1977 152 7 0 chr11 69064635 69064932 -79718540 + AluSx SINE Alu 2 300 -12 2480 194 34 109 chr11 69064932 69065155 -79718317 + L1ME1 LINE L1 5908 6008 -158 1817 181 7 0 chr11 69065155 69065453 -79718019 + AluJo SINE Alu 1 300 -12 2480 194 34 109 chr11 69065453 69065553 -79717919 + L1ME1 LINE L1 6008 6114 -52 2229 75 0 41 chr11 69065553 69065887 -79717585 - AluSx SINE Alu 0 322 1 577 156 0 97 chr11 69065887 69065945 -79717527 + L1MA10 LINE L1 6256 6318 -16 2274 86 7 26 chr11 69066278 69066581 -79716891 - AluSc SINE Alu -12 297 1 510 211 0 18 chr11 69066632 69066741 -79716731 + L1MC4a LINE L1 7203 7309 -499 361 192 14 0 chr11 69066748 69066821 -79716651 + FRAM/FAM SINE Alu 2 75 -100 248 214 32 135 chr11 69066997 69067123 -79716349 - MIR SINE MIR -103 159 47 181 350 50 7 chr11 69067503 69067643 -79715829 - MIR3 SINE MIR -59 149 4 202 250 17 0 chr11 69067973 69068033 -79715439 - MIR SINE MIR -63 145 85 355 193 108 12 chr11 69069165 69069248 -79714224 - L2 LINE L2 -31 3282 3192 293 306 110 67 chr11 69069484 69069857 -79713615 + L2 LINE L2 2806 3194 -78 2277 108 7 0 chr11 69069859 69070165 -79713307 + AluSp SINE Alu 1 308 -5 328 261 192 23 chr11 69070221 69070351 -79713121 - L3 LINE CR1 -3 1574 1423 428 279 42 48 chr11 69070519 69070684 -79712788 - MIR3 SINE MIR -8 200 37 809 147 0 0 chr11 69070882 69070991 -79712481 + AluJo/FLAM SINE Alu 1 109 -203 511 133 0 24 chr11 69070991 69071074 -79712398 + FLAM_A SINE Alu 48 128 -14 394 187 27 0 chr11 69071209 69071284 -79712188 - MER46C DNA MER2_type -7 331 255 304 200 12 59 chr11 69071462 69071547 -79711925 - MIR SINE MIR -79 129 49 235 280 35 35 chr11 69072117 69072202 -79711270 + MIR SINE MIR 106 190 -72 1949 142 14 3 chr11 69072202 69072497 -79710975 + AluSx SINE Alu 1 298 -14 2053 105 31 14 chr11 69072498 69072792 -79710680 + AluSg SINE Alu 2 300 -10 235 280 35 35 chr11 69072792 69072848 -79710624 + MIR SINE MIR 189 248 -14 685 184 46 0 chr11 69072866 69072975 -79710497 + FLAM_A SINE Alu 1 114 -19 1948 128 3 30 chr11 69072976 69073248 -79710224 + AluSq SINE Alu 1 279 -34 336 24 0 0 chr11 69073248 69073289 -79710183 + (TC)n Simple_repeat Simple_repeat 1 41 0 198 0 0 0 chr11 69073288 69073310 -79710162 + (CA)n Simple_repeat Simple_repeat 1 22 0 * 1948 128 3 30 chr11 69073289 69073334 -79710138 + AluSq SINE Alu 279 289 -24 2058 128 3 17 chr11 69073372 69073662 -79709810 + AluSg SINE Alu 1 286 -24 2063 121 6 19 chr11 69073669 69073984 -79709488 + AluSx SINE Alu 1 311 -1 2373 75 54 0 chr11 69073986 69074281 -79709191 + AluY SINE Alu 1 311 0 187 305 68 0 chr11 69074288 69074347 -79709125 - L2 LINE L2 -21 3251 3189 1953 125 3 59 chr11 69074553 69074873 -79708599 + AluJb SINE Alu 1 302 -10 228 327 115 0 chr11 69076113 69076226 -79707246 - L2 LINE L2 -11 3261 3136 1939 126 45 0 chr11 69076848 69077134 -79706338 - AluJb SINE Alu -13 299 1 2214 67 0 3 chr11 69077142 69077462 -79706010 - AluY SINE Alu 0 320 2 220 232 18 0 chr11 69077806 69077862 -79705610 + (TTCA)n Simple_repeat Simple_repeat 3 59 0 1713 146 39 0 chr11 69078783 69079063 -79704409 - AluJb SINE Alu -15 297 7 216 294 33 0 chr11 69080823 69080915 -79702557 + MIR SINE MIR 22 116 -92 191 348 116 22 chr11 69081249 69081387 -79702085 + MIR SINE MIR 53 203 -59 332 239 14 0 chr11 69081425 69081496 -79701976 - MIR SINE MIR -101 161 90 262 291 35 0 chr11 69082295 69082381 -79701091 - MIR SINE MIR -72 136 48 277 314 119 70 chr11 69082956 69083141 -79700331 + L3 LINE CR1 1300 1493 -84 224 339 45 9 chr11 69085541 69085653 -79697819 - MIR SINE MIR -57 151 36 1694 160 0 4 chr11 69085676 69085944 -79697528 - AluJo SINE Alu -45 267 1 2084 95 7 23 chr11 69087128 69087432 -79696040 - AluSx SINE Alu -13 299 1 22 35 0 0 chr11 69088641 69088670 -79694802 + GC_rich Low_complexity Low_complexity 1 29 0 433 318 118 36 chr11 69089108 69089249 -79694223 - MIR SINE MIR -2 260 93 2102 129 0 0 chr11 69089249 69089552 -79693920 + AluSq SINE Alu 1 303 -10 433 318 118 36 chr11 69089552 69089630 -79693842 - MIR SINE MIR -169 93 23 191 327 69 0 chr11 69089799 69089900 -79693572 - L2 LINE L2 -29 3243 3136 1012 71 0 0 chr11 69089905 69090032 -79693440 + AluSq/x SINE Alu 1 127 -185 2221 88 0 7 chr11 69090038 69090333 -79693139 + AluSc SINE Alu 1 293 -16 3514 171 51 42 chr11 69090334 69091054 -79692418 + LTR8A LTR ERV1 1 727 0 218 325 117 0 chr11 69091054 69091174 -79692298 - MIR3 SINE MIR -43 165 32 1672 136 62 98 chr11 69091252 69091456 -79692016 + MER4D LTR ERV1 1 211 -692 1787 191 3 0 chr11 69091456 69091755 -79691717 + AluJb SINE Alu 1 300 -12 2452 60 3 0 chr11 69091756 69092058 -79691414 + AluY SINE Alu 1 303 -8 1672 136 62 98 chr11 69092058 69092120 -79691352 + MER4D LTR ERV1 211 274 -629 2296 87 0 3 chr11 69092120 69092418 -79691054 + AluSx SINE Alu 1 297 -15 1250 166 66 106 chr11 69092424 69092569 -79690903 + AluSx SINE Alu 5 133 -169 201 39 0 0 chr11 69092569 69092595 -79690877 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 1250 166 66 106 chr11 69092595 69092751 -79690721 + AluSx SINE Alu 133 294 -8 1672 136 62 98 chr11 69092751 69092924 -79690548 + MER4D LTR ERV1 279 434 -469 1826 84 0 132 chr11 69093346 69093679 -79689793 - AluSx SINE Alu -23 289 1 242 369 18 9 chr11 69093735 69093846 -79689626 + L2 LINE L2 3141 3252 -20 581 236 188 12 chr11 69093850 69094180 -79689292 - MER113 DNA MER1_type? -44 477 90 229 307 55 16 chr11 69094271 69094398 -79689074 - L2 LINE L2 -289 2983 2852 508 255 137 29 chr11 69094507 69094785 -79688687 - MER20B DNA MER1_type -37 746 439 2192 131 0 0 chr11 69094801 69095152 -79688320 - AluSx SINE Alu 0 351 1 2117 103 0 7 chr11 69095176 69095468 -79688004 - AluSg SINE Alu -20 290 1 2053 117 7 7 chr11 69095502 69095835 -79687637 - AluSq SINE Alu 0 333 1 602 210 0 0 chr11 69095839 69095982 -79687490 - L1MA4 LINE L1 0 6300 6158 664 238 5 10 chr11 69095982 69096175 -79687297 - MER20B DNA MER1_type -366 417 226 21 36 0 0 chr11 69096175 69096203 -79687269 + AT_rich Low_complexity Low_complexity 1 28 0 387 0 0 0 chr11 69096253 69096296 -79687176 + (ATG)n Simple_repeat Simple_repeat 2 44 0 2284 100 0 0 chr11 69096298 69096599 -79686873 - AluSq SINE Alu -12 301 1 2076 172 24 22 chr11 69096599 69096663 -79686809 - L1MC2 LINE L1 -456 5888 5826 2226 116 0 10 chr11 69096663 69096974 -79686498 - AluSq SINE Alu -3 310 3 2076 172 24 22 chr11 69096974 69097368 -79686104 - L1MC2 LINE L1 -518 5826 5429 2191 102 3 10 chr11 69097369 69097682 -79685790 - AluSx SINE Alu -1 311 1 2740 225 12 57 chr11 69097683 69098235 -79685237 - L1MC2 LINE L1 -869 5277 4701 2168 110 0 0 chr11 69098235 69098527 -79684945 - AluSg SINE Alu -18 292 1 2740 225 12 57 chr11 69098527 69098771 -79684701 - L1MC2 LINE L1 -1445 4701 4526 1517 197 11 0 chr11 69098771 69099094 -79684378 - AluJb SINE Alu 0 335 10 2740 225 12 57 chr11 69099094 69099240 -79684232 - L1MC2 LINE L1 -1620 4526 4375 1041 29 7 0 chr11 69099245 69099384 -79684088 + L1PA6 LINE L1 5690 5829 -325 2103 71 14 3 chr11 69099384 69099666 -79683806 + AluY SINE Alu 1 285 -26 805 139 41 8 chr11 69099773 69099895 -79683577 + FLAM_C SINE Alu 2 127 -6 599 141 27 82 chr11 69099897 69099970 -79683502 - L1M4c LINE L1 -3940 2706 2631 2100 135 0 0 chr11 69099970 69100266 -79683206 + AluSx SINE Alu 1 296 -16 599 141 27 82 chr11 69100266 69100360 -79683112 - L1M4c LINE L1 -4015 2631 2547 1578 194 47 0 chr11 69100360 69100520 -79682952 - AluJo SINE Alu -18 294 114 194 0 0 37 chr11 69100520 69100547 -79682925 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1578 194 47 0 chr11 69100547 69100665 -79682807 - AluJo SINE Alu -198 114 3 599 141 27 82 chr11 69100665 69100680 -79682792 - L1M4c LINE L1 -4099 2547 2533 * 935 317 78 37 chr11 69100666 69101310 -79682162 - L1M4c LINE L1 -5869 673 4 187 300 14 43 chr11 69101317 69101387 -79682085 + MIR SINE MIR 101 168 -94 2009 117 20 10 chr11 69101418 69101716 -79681756 + AluSx SINE Alu 1 301 -11 2140 109 7 7 chr11 69102253 69102557 -79680915 - AluSx SINE Alu -8 304 1 2279 78 20 0 chr11 69103086 69103382 -79680090 - AluSp SINE Alu -11 302 1 222 314 35 0 chr11 69103591 69103677 -79679795 - MIR SINE MIR -167 95 7 220 333 11 0 chr11 69103740 69103827 -79679645 + L2 LINE L2 2583 2670 -644 * 445 358 120 7 chr11 69103806 69104080 -79679392 + L2 LINE L2 2968 3272 0 269 257 225 23 chr11 69104810 69104941 -79678531 + MIR3 SINE MIR 12 164 -61 360 264 76 7 chr11 69105796 69105940 -79677532 + MIR3 SINE MIR 55 208 0 324 244 23 12 chr11 69106079 69106165 -79677307 - MIR3 SINE MIR -15 193 107 2108 106 3 13 chr11 69106676 69106979 -79676493 - AluSx SINE Alu -12 300 1 694 120 0 169 chr11 69107017 69107116 -79676356 - FLAM_C SINE Alu -184 118 48 1711 92 149 0 chr11 69107116 69107377 -79676095 - AluSg1 SINE Alu -9 300 1 694 120 0 169 chr11 69107377 69107419 -79676053 - FLAM_C SINE Alu -254 48 1 237 308 62 0 chr11 69107876 69107941 -79675531 - L2 LINE L2 -53 3219 3151 203 179 198 66 chr11 69108476 69108582 -79674890 + MIR SINE MIR 34 153 -55 1688 136 29 4 chr11 69108854 69109126 -79674346 + AluJb SINE Alu 17 295 -17 331 323 12 73 chr11 69109262 69109426 -79674046 - MIR SINE MIR -98 164 11 228 162 0 0 chr11 69109428 69109465 -79674007 - MIR SINE MIR -59 149 113 415 317 176 5 chr11 69110240 69110439 -79673033 - MIR SINE MIR -14 248 16 217 213 29 60 chr11 69111056 69111142 -79672330 + MIR SINE MIR 81 145 -63 229 256 171 0 chr11 69111788 69111870 -79671602 + L2 LINE L2 3213 3308 -5 347 188 0 0 chr11 69112000 69112064 -79671408 - L2 LINE L2 0 3313 3250 300 294 156 57 chr11 69112114 69112607 -79670865 + L2 LINE L2 2725 3268 -4 256 239 42 14 chr11 69112671 69112742 -79670730 + L2 LINE L2 3235 3307 -6 2478 36 0 7 chr11 69112742 69113046 -79670426 + AluY SINE Alu 1 302 -9 195 42 0 0 chr11 69113052 69113076 -79670396 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 2141 109 3 10 chr11 69114377 69114679 -79668793 - AluSx SINE Alu -12 300 1 1035 110 0 14 chr11 69114679 69114824 -79668648 - AluJb SINE Alu -167 145 3 1598 130 98 46 chr11 69114883 69115229 -79668243 + MLT1B LTR MaLR 1 364 -26 516 319 18 13 chr11 69115256 69115485 -79667987 + ERVL LTR ERVL 3412 3641 -2123 808 261 46 25 chr11 69115718 69115956 -79667516 + MIR SINE MIR 7 249 -13 586 319 32 5 chr11 69116039 69116255 -79667217 + ERVL LTR ERVL 5193 5414 -350 900 208 9 33 chr11 69116315 69116350 -79667122 + MER20 DNA MER1_type 7 41 -178 1960 124 92 14 chr11 69116350 69116698 -79666774 + THE1C LTR MaLR 1 375 0 900 208 9 33 chr11 69116698 69116874 -79666598 + MER20 DNA MER1_type 41 213 -6 2281 133 99 8 chr11 69117020 69117412 -79666060 + MSTA LTR MaLR 1 428 0 235 258 150 0 chr11 69118142 69118296 -79665176 + L1M4 LINE L1 5288 5463 -701 2149 128 3 0 chr11 69118397 69118702 -79664770 + AluSx SINE Alu 1 306 -6 1765 121 51 18 chr11 69118964 69119257 -79664215 + AluSq SINE Alu 2 303 0 270 313 52 19 chr11 69119480 69119609 -79663863 + MIR SINE MIR 21 162 -70 577 263 53 32 chr11 69119713 69119796 -79663676 + MIR SINE MIR 64 144 -118 2028 146 0 0 chr11 69119796 69120098 -79663374 + AluJo SINE Alu 1 302 -10 577 263 53 32 chr11 69120098 69120204 -79663268 + MIR SINE MIR 144 257 -5 29 47 0 0 chr11 69120945 69120988 -79662484 + GC_rich Low_complexity Low_complexity 1 43 0 406 291 34 20 chr11 69121333 69121481 -79661991 - MIR3 SINE MIR -29 179 30 269 288 68 61 chr11 69122161 69122324 -79661148 - MIR3 SINE MIR -28 180 17 190 241 81 58 chr11 69122376 69122463 -79661009 + MIR SINE MIR 37 125 -83 514 287 17 50 chr11 69123027 69123208 -79660264 - MIR3 SINE MIR -17 191 17 215 300 0 0 chr11 69123658 69123718 -79659754 + MIR SINE MIR 141 200 -62 235 385 60 0 chr11 69124197 69124314 -79659158 - L3 LINE CR1 -99 1478 1355 630 259 22 53 chr11 69124337 69124587 -79658885 - MIR SINE MIR -10 252 9 226 320 70 8 chr11 69124598 69124726 -79658746 - L3 LINE CR1 -259 1318 1183 643 273 67 72 chr11 69124761 69125150 -79658322 - L2 LINE L2 -59 3213 2827 391 346 85 48 chr11 69125334 69125733 -79657739 + L2 LINE L2 2857 3270 -2 241 257 211 46 chr11 69125742 69125894 -79657578 - L2 LINE L2 -24 3248 3072 316 257 15 12 chr11 69126656 69126754 -79656718 + MIR SINE MIR 19 118 -90 1048 186 0 78 chr11 69127247 69127478 -79655994 - MER58A DNA MER1_type -8 216 4 423 296 38 0 chr11 69127490 69127622 -79655850 + MIR3 SINE MIR 9 145 -63 1336 190 91 8 chr11 69127640 69127893 -79655579 + AluJo SINE Alu 1 274 -38 237 159 0 0 chr11 69129056 69129100 -79654372 + (TG)n Simple_repeat Simple_repeat 1 44 0 249 57 0 0 chr11 69129785 69129820 -79653652 + (CA)n Simple_repeat Simple_repeat 2 36 0 217 217 0 0 chr11 69131532 69131578 -79651894 + GA-rich Low_complexity Low_complexity 1 46 0 34 0 0 0 chr11 69131855 69131889 -79651583 + GC_rich Low_complexity Low_complexity 1 34 0 207 367 0 31 chr11 69137069 69137167 -79646305 + MIR SINE MIR 38 132 -76 317 254 80 51 chr11 69137323 69137461 -79646011 - MIR3 SINE MIR -32 176 35 294 73 0 0 chr11 69138631 69138672 -79644800 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 183 340 43 21 chr11 69138688 69138782 -79644690 - L2 LINE L2 -36 3236 3141 244 303 59 38 chr11 69139032 69139211 -79644261 - MIR SINE MIR -63 145 16 1858 146 15 0 chr11 69139478 69139752 -79643720 + AluJb SINE Alu 1 278 -34 186 343 0 43 chr11 69139799 69139869 -79643603 + MIR SINE MIR 119 185 -77 181 190 52 52 chr11 69140227 69140285 -79643187 + L2 LINE L2 3206 3263 -9 306 73 0 0 chr11 69140290 69140331 -79643141 + (TTTC)n Simple_repeat Simple_repeat 2 42 0 496 136 74 0 chr11 69140341 69140422 -79643050 - AluJb SINE Alu -206 106 20 1111 184 97 22 chr11 69140593 69140622 -79642850 + L1MC3 LINE L1 7459 7484 -301 1846 168 17 0 chr11 69140622 69140913 -79642559 + AluJo SINE Alu 9 304 -8 1111 184 97 22 chr11 69140913 69141161 -79642311 + L1MC3 LINE L1 7484 7757 -28 2477 93 0 0 chr11 69141165 69141477 -79641995 + AluSx SINE Alu 1 312 0 2194 112 0 7 chr11 69141487 69141790 -79641682 - AluSg SINE Alu -9 301 1 239 192 0 0 chr11 69142057 69142109 -79641363 - MIR SINE MIR -71 137 86 499 283 90 33 chr11 69142253 69142553 -79640919 - L2 LINE L2 -1 3312 2996 1920 133 0 83 chr11 69142559 69142896 -79640576 + AluJb SINE Alu 1 309 -3 2155 98 29 23 chr11 69142898 69143321 -79640151 + AluY SINE Alu 3 427 0 935 332 132 8 chr11 69143321 69143842 -79639630 - L2 LINE L2 -337 2977 2392 2032 112 56 0 chr11 69143843 69144129 -79639343 + AluSg SINE Alu 3 304 -6 2318 120 0 0 chr11 69144151 69144460 -79639012 - AluSq SINE Alu -4 309 1 1802 178 3 22 chr11 69144722 69145072 -79638400 + AluJo SINE Alu 3 346 0 1478 143 34 115 chr11 69145082 69145207 -79638265 + AluJo SINE Alu 6 140 -172 2001 162 13 0 chr11 69145207 69145515 -79637957 + AluSq SINE Alu 1 312 -1 1478 143 34 115 chr11 69145515 69145710 -79637762 + AluJo SINE Alu 140 300 -12 2182 114 3 28 chr11 69145710 69146027 -79637445 + AluSg SINE Alu 1 309 -1 2331 90 3 7 chr11 69146049 69146348 -79637124 + AluSx SINE Alu 1 298 -14 2493 72 3 7 chr11 69146393 69146697 -79636775 + AluY SINE Alu 1 303 -8 411 272 33 17 chr11 69146750 69146930 -79636542 + L1ME4a LINE L1 5901 6083 -38 198 182 0 0 chr11 69146943 69146976 -79636496 + L2 LINE L2 3222 3254 -18 240 262 71 36 chr11 69147357 69147441 -79636031 + MIR3 SINE MIR 13 99 -109 223 208 21 0 chr11 69147476 69147524 -79635948 + MIR SINE MIR 88 136 -72 2467 87 0 3 chr11 69149379 69149688 -79633784 + AluSq SINE Alu 1 308 -5 242 319 9 9 chr11 69150242 69150355 -79633117 - MIR SINE MIR -129 133 21 885 94 0 0 chr11 69151055 69151172 -79632300 + AluJo SINE Alu 2 118 -184 359 175 0 0 chr11 69151175 69151238 -79632234 + AluJo SINE Alu 186 248 -54 430 204 204 26 chr11 69151238 69151390 -79632082 + MIR SINE MIR 84 262 0 229 36 0 0 chr11 69151493 69151521 -79631951 + MER84 LTR ERVI 1 28 -479 467 63 203 13 chr11 69151530 69151609 -79631863 + MER84 LTR ERVI 1 94 -413 4185 134 161 110 chr11 69151613 69153081 -79630391 - pTR5 LTR ERV1 0 2438 746 1861 131 35 0 chr11 69153081 69153395 -79630077 + MER84 LTR ERVI 89 413 -94 1674 86 0 14 chr11 69153396 69153606 -79629866 + AluSg SINE Alu 1 207 -103 198 0 0 0 chr11 69153634 69153656 -79629816 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 304 330 54 0 chr11 69153667 69153779 -79629693 - BaEV-int LTR ERV1 -5563 1086 969 3449 106 8 6 chr11 69153779 69154289 -79629183 - MER9 LTR ERVK 0 511 1 1150 170 17 17 chr11 69155714 69155976 -79627496 + MER4D LTR ERV1 506 903 0 597 244 20 12 chr11 69156146 69156247 -79627225 + MIR SINE MIR 63 169 -93 2234 115 0 7 chr11 69156247 69156543 -79626929 + AluSc SINE Alu 1 294 -15 597 244 20 12 chr11 69156543 69156614 -79626858 + MIR SINE MIR 169 238 -24 869 149 4 114 chr11 69156685 69156797 -79626675 - MER41B LTR ERV1 -11 597 565 2085 126 18 0 chr11 69156797 69157120 -79626352 - AluSx SINE Alu 0 328 1 869 149 4 114 chr11 69157120 69157269 -79626203 - MER41B LTR ERV1 -43 565 401 2928 70 0 63 chr11 69157272 69157714 -79625758 + MER4B LTR ERV1 1 414 -196 1318 105 16 93 chr11 69157724 69157791 -79625681 + MER4B LTR ERV1 382 453 -157 2314 117 0 0 chr11 69157791 69158090 -79625382 - AluSx SINE Alu -13 299 1 1318 105 16 93 chr11 69158090 69158270 -79625202 + MER4B LTR ERV1 453 610 0 1990 181 5 34 chr11 69158273 69158683 -79624789 - MER41B LTR ERV1 -237 398 1 497 299 98 12 chr11 69158891 69159145 -79624327 - L2 LINE L2 -461 2853 2578 1224 136 0 0 chr11 69159241 69159410 -79624062 - AluSg/x SINE Alu -20 290 122 361 144 0 89 chr11 69159418 69159463 -79624009 - MIR SINE MIR -67 195 160 1914 153 7 3 chr11 69159463 69159758 -79623714 - AluSx SINE Alu -16 296 1 361 144 0 89 chr11 69159758 69159802 -79623670 - MIR SINE MIR -102 160 114 2274 134 42 47 chr11 69159891 69160106 -79623366 - MSTC LTR MaLR -5 423 208 1778 143 109 0 chr11 69160106 69160372 -79623100 - AluSx SINE Alu -17 295 1 2274 134 42 47 chr11 69160372 69160527 -79622945 - MSTC LTR MaLR -220 208 53 4246 140 83 52 chr11 69160527 69161023 -79622449 + MER4D LTR ERV1 1 537 -366 2442 73 3 3 chr11 69161023 69161324 -79622148 + AluY SINE Alu 3 303 -8 4246 140 83 52 chr11 69161324 69161703 -79621769 + MER4D LTR ERV1 537 903 0 2274 134 42 47 chr11 69161703 69161756 -79621716 - MSTC LTR MaLR -375 53 1 2432 118 24 73 chr11 69161779 69161893 -79621579 - MSTA LTR MaLR 0 428 310 2339 115 3 0 chr11 69161893 69162205 -79621267 + AluSp SINE Alu 1 313 0 2432 118 24 73 chr11 69162205 69162540 -79620932 - MSTA LTR MaLR -118 310 1 888 257 84 14 chr11 69162581 69163061 -79620411 - L2 LINE L2 -243 3070 2553 249 402 0 0 chr11 69163085 69163182 -79620290 - L2 LINE L2 -3 3269 3173 549 291 90 29 chr11 69163200 69163350 -79620122 + MER112 DNA MER1_type 1 173 -87 588 29 0 0 chr11 69163350 69163420 -79620052 + (CTATT)n Simple_repeat Simple_repeat 4 73 0 549 291 90 29 chr11 69163420 69163513 -79619959 + MER112 DNA MER1_type 173 259 -1 2022 156 7 42 chr11 69163617 69164021 -79619451 - MLT1B LTR MaLR 0 390 1 226 305 67 19 chr11 69164419 69164524 -79618948 - L2 LINE L2 -639 2675 2566 * 408 232 14 168 chr11 69164516 69164650 -79618822 - MIR SINE MIR 0 262 109 2003 139 11 3 chr11 69164650 69164937 -79618535 - AluJb SINE Alu -23 289 1 2073 86 71 0 chr11 69164943 69165235 -79618237 - AluSc SINE Alu 0 311 1 369 0 0 0 chr11 69165235 69165276 -79618196 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 2327 88 0 3 chr11 69165276 69165559 -79617913 - AluSg SINE Alu -28 282 1 408 232 14 168 chr11 69165559 69165633 -79617839 - MIR SINE MIR -155 107 77 3209 244 77 54 chr11 69166663 69167243 -79616229 - L1M4b LINE L1 -5542 1317 703 1972 130 33 13 chr11 69167243 69167543 -79615929 - AluSx SINE Alu -6 306 1 3209 244 77 54 chr11 69167543 69167968 -79615504 - L1M4b LINE L1 -6156 703 289 1481 138 9 5 chr11 69167969 69168187 -79615285 - AluJb SINE Alu -9 303 85 2308 80 0 23 chr11 69168357 69168658 -79614814 + AluY SINE Alu 1 294 -17 677 98 0 2 chr11 69168667 69168913 -79614559 + AluSx SINE Alu 1 299 -11 1278 173 40 7 chr11 69168963 69169235 -79614237 + LTR43 LTR ERV1 176 456 -146 2183 120 0 7 chr11 69169236 69169553 -79613919 - AluSg SINE Alu 0 310 1 241 295 32 21 chr11 69169554 69169649 -79613823 + MER41E LTR ERV1 358 453 -59 448 218 40 0 chr11 69169665 69169766 -79613706 + MLT1F LTR MaLR 39 143 -447 1542 163 35 42 chr11 69169774 69169955 -79613517 - AluJo SINE Alu -18 294 114 2485 118 46 22 chr11 69169955 69169993 -79613479 - MSTA LTR MaLR -4 424 388 2282 110 3 3 chr11 69169993 69170294 -79613178 + AluSx SINE Alu 1 301 -11 2485 118 46 22 chr11 69170294 69170669 -79612803 - MSTA LTR MaLR -40 388 1 1542 163 35 42 chr11 69170669 69170775 -79612697 - AluJo SINE Alu -198 114 9 1148 218 27 23 chr11 69170782 69171044 -79612428 + MLT1F LTR MaLR 160 422 -120 974 97 103 0 chr11 69171304 69171469 -79612003 + LTR47A LTR ERVL 261 442 -10 473 252 9 0 chr11 69171472 69171583 -79611889 + MLT1F LTR MaLR 448 559 -8 2297 123 0 0 chr11 69173931 69174241 -79609231 - AluSx SINE Alu -2 310 1 1129 191 40 126 chr11 69174246 69174643 -79608829 - MLT1E LTR MaLR -214 379 17 255 280 21 0 chr11 69174672 69174765 -79608707 + MLT1F-int LTR MaLR 290 384 -987 1204 209 55 41 chr11 69174787 69175079 -79608393 + AluJo SINE Alu 6 301 -11 827 134 19 19 chr11 69175101 69175319 -79608153 + G-rich Low_complexity Low_complexity 1 218 0 619 269 0 36 chr11 69175337 69175530 -79607942 + MLT1F-int LTR MaLR 402 587 -784 2079 141 7 0 chr11 69175531 69175851 -79607621 + AluSq SINE Alu 1 313 0 346 319 89 0 chr11 69176047 69176216 -79607256 + MLT1F-int LTR MaLR 701 884 -487 1923 155 33 7 chr11 69176566 69176870 -79606602 - AluJo SINE Alu 0 312 1 2588 60 3 0 chr11 69176984 69177284 -79606188 + AluY SINE Alu 1 301 -10 4738 36 0 2 chr11 69177286 69177846 -79605626 + L1PA4 LINE L1 5594 6152 -3 405 290 7 41 chr11 69177980 69178125 -79605347 - MIR SINE MIR -102 160 21 368 247 11 0 chr11 69178340 69178433 -79605039 + MIR SINE MIR 62 155 -107 269 336 19 19 chr11 69178435 69178542 -79604930 - L2 LINE L2 -8 3264 3158 285 304 143 0 chr11 69179225 69179337 -79604135 + MIR SINE MIR 95 222 -40 233 252 26 26 chr11 69180126 69180296 -79603176 + (CGGGG)n Simple_repeat Simple_repeat 1 170 0 739 259 132 5 chr11 69181959 69182171 -79601301 + MIR SINE MIR 4 242 -20 * 748 228 129 21 chr11 69182143 69182376 -79601096 - MIR SINE MIR 0 262 5 194 274 0 0 chr11 69182381 69182432 -79601040 - MIR SINE MIR -61 147 97 483 270 5 37 chr11 69182665 69182872 -79600600 - MIR SINE MIR 0 262 17 331 271 10 66 chr11 69183080 69183191 -79600281 + MER5A DNA MER1_type 10 125 -64 2322 107 0 0 chr11 69183191 69183499 -79599973 - AluSx SINE Alu -4 308 1 331 271 10 66 chr11 69183499 69183540 -79599932 + MER5A DNA MER1_type 125 167 -22 417 297 82 33 chr11 69183764 69183946 -79599526 + MIR SINE MIR 28 218 -44 314 331 79 58 chr11 69184146 69184424 -79599048 + L2 LINE L2 2988 3271 -1 403 314 48 43 chr11 69185114 69185263 -79598209 + MIR SINE MIR 1 153 -109 2190 93 0 45 chr11 69185263 69185573 -79597899 - AluSx SINE Alu -16 296 1 403 314 48 43 chr11 69185573 69185633 -79597839 + MIR SINE MIR 153 211 -51 215 291 39 39 chr11 69185973 69186076 -79597396 - MIR SINE MIR -68 140 38 806 280 47 9 chr11 69186093 69186304 -79597168 + MIR SINE MIR 18 236 -26 199 240 144 39 chr11 69186922 69187026 -79596446 - MIR SINE MIR -81 181 67 717 236 66 74 chr11 69188055 69188117 -79595355 - MIR SINE MIR -6 256 195 2133 95 0 3 chr11 69188117 69188429 -79595043 - AluSx SINE Alu 0 311 1 717 236 66 74 chr11 69188429 69188607 -79594865 - MIR SINE MIR -67 195 17 193 244 0 0 chr11 69188761 69188802 -79594670 - MIR3 SINE MIR -53 155 115 539 330 51 67 chr11 69190090 69190541 -79592931 - L2 LINE L2 -16 3256 2813 479 267 194 6 chr11 69190698 69190878 -79592594 - MIR SINE MIR 0 262 49 246 250 113 0 chr11 69192033 69192113 -79591359 + MIR SINE MIR 117 205 -57 391 331 93 0 chr11 69192263 69192414 -79591058 + MIR SINE MIR 79 243 -19 228 217 0 58 chr11 69192567 69192636 -79590836 - MIR SINE MIR -113 149 85 293 234 16 0 chr11 69194171 69194235 -79589237 + MIR SINE MIR 80 144 -118 260 310 58 0 chr11 69194392 69194479 -79588993 - MIR SINE MIR -71 191 100 2119 116 0 3 chr11 69194597 69194890 -79588582 + AluSx SINE Alu 1 292 -20 395 263 95 36 chr11 69194903 69195040 -79588432 + MIR3 SINE MIR 16 160 -48 2165 119 0 0 chr11 69195043 69195338 -79588134 - AluSx SINE Alu -17 295 1 428 236 8 27 chr11 69195383 69195514 -79587958 + MIR SINE MIR 71 198 -63 256 248 151 12 chr11 69195980 69196110 -79587362 + MIR3 SINE MIR 98 261 -1 293 348 18 18 chr11 69196151 69196263 -79587209 + MIR SINE MIR 16 127 -81 2028 150 0 3 chr11 69196404 69196717 -79586755 - AluSx SINE Alu 0 312 1 569 312 125 22 chr11 69196785 69197186 -79586286 - L1MC4a LINE L1 -1861 5947 5506 2236 97 0 3 chr11 69197368 69197667 -79585805 - AluSc SINE Alu -11 298 1 531 258 45 28 chr11 69197675 69197853 -79585619 - MLT1K LTR MaLR -11 577 397 322 233 173 27 chr11 69197910 69198060 -79585412 - MLT1K LTR MaLR -303 285 114 223 339 40 32 chr11 69198716 69198840 -79584632 + MIR SINE MIR 16 140 -68 305 255 20 59 chr11 69199105 69199145 -79584327 - MER5A DNA MER1_type -83 106 66 1683 164 3 24 chr11 69199145 69199304 -79584168 - AluJo SINE Alu -20 292 131 312 27 0 0 chr11 69199304 69199341 -79584131 + (TTTTC)n Simple_repeat Simple_repeat 4 40 0 1613 180 14 18 chr11 69199341 69199624 -79583848 - AluJo SINE Alu -30 282 1 1683 164 3 24 chr11 69199624 69199755 -79583717 - AluJo SINE Alu -179 133 7 305 255 20 59 chr11 69199755 69199816 -79583656 - MER5A DNA MER1_type -123 66 9 358 231 104 36 chr11 69200154 69200279 -79583193 + MIR3 SINE MIR 63 195 -13 213 159 0 72 chr11 69200298 69200367 -79583105 + GA-rich Low_complexity Low_complexity 3 66 0 468 291 22 94 chr11 69201445 69201660 -79581812 - MLT1K LTR MaLR -258 330 144 2257 114 0 0 chr11 69201660 69201967 -79581505 + AluSx SINE Alu 1 307 -5 468 291 22 94 chr11 69201967 69202071 -79581401 - MLT1K LTR MaLR -444 144 34 285 302 139 60 chr11 69202111 69202229 -79581243 + L2 LINE L2 2811 2918 -354 1921 114 6 51 chr11 69202229 69202545 -79580927 - AluSx SINE Alu -10 302 1 285 302 139 60 chr11 69202545 69202807 -79580665 + L2 LINE L2 2918 3221 -51 654 260 214 39 chr11 69202973 69203407 -79580065 - MLT1G1 LTR MaLR -10 585 76 749 180 23 0 chr11 69203412 69203540 -79579932 + FLAM_A SINE Alu 1 131 -2 801 165 269 7 chr11 69203645 69203924 -79579548 - MLT1D LTR MaLR 0 505 154 471 213 169 7 chr11 69203938 69204074 -79579398 + MIR SINE MIR 53 210 -52 2045 125 3 10 chr11 69204093 69204435 -79579037 - AluSq SINE Alu 0 313 1 348 267 112 17 chr11 69205261 69205377 -79578095 - MIR SINE MIR -23 239 113 255 274 63 32 chr11 69205436 69205531 -79577941 + MIR SINE MIR 15 112 -150 226 250 14 42 chr11 69205946 69206018 -79577454 + L2 LINE L2 3198 3267 -5 317 276 113 13 chr11 69206601 69206771 -79576701 + MIR SINE MIR 15 194 -59 373 286 137 12 chr11 69207826 69207987 -79575485 + MIR SINE MIR 82 262 0 416 225 27 27 chr11 69208042 69208153 -79575319 + MIR SINE MIR 111 221 -41 215 347 53 0 chr11 69208286 69208381 -79575091 + MIR3 SINE MIR 88 187 -21 255 213 166 19 chr11 69209181 69209306 -79574166 + MIR3 SINE MIR 16 156 -52 636 212 212 0 chr11 69209373 69209543 -79573929 - MIR SINE MIR -28 234 29 1236 82 29 0 chr11 69209599 69209770 -79573702 - AluSc SINE Alu -2 307 132 2335 93 0 0 chr11 69209770 69210071 -79573401 - AluY SINE Alu -6 305 5 526 239 39 0 chr11 69210135 69210265 -79573207 + MIR SINE MIR 30 164 -98 2064 133 0 0 chr11 69210979 69211272 -79572200 + AluJb SINE Alu 11 303 -9 2142 81 11 14 chr11 69211280 69211460 -79572012 - AluSq SINE Alu 0 316 136 2375 61 0 0 chr11 69211460 69211753 -79571719 - AluY SINE Alu -18 293 1 2142 81 11 14 chr11 69211753 69211889 -79571583 - AluSq SINE Alu -180 136 1 1674 176 38 0 chr11 69212102 69212392 -79571080 + AluJb SINE Alu 3 303 -9 2171 85 7 7 chr11 69212442 69212735 -79570737 + AluSq SINE Alu 2 294 -19 1394 167 104 44 chr11 69212774 69212848 -79570624 + MER44D DNA MER2_type 4 72 -2419 2140 124 0 0 chr11 69212848 69213147 -79570325 + AluSx SINE Alu 1 299 -13 1394 167 104 44 chr11 69213147 69213389 -79570083 + MER44D DNA MER2_type 72 609 0 325 312 134 28 chr11 69213406 69213432 -79570040 + L1ME3 LINE L1 5258 5280 -882 1951 148 3 3 chr11 69213432 69213735 -79569737 + AluSx SINE Alu 1 303 -9 325 312 134 28 chr11 69213735 69214134 -79569338 + L1ME3 LINE L1 5280 5760 -402 1987 122 3 10 chr11 69214134 69214267 -79569205 + AluSq SINE Alu 1 133 -180 2213 109 7 0 chr11 69214267 69214571 -79568901 + AluSx SINE Alu 1 306 -6 1987 122 3 10 chr11 69214571 69214733 -79568739 + AluSq SINE Alu 133 294 -19 325 312 134 28 chr11 69214733 69214874 -79568598 + L1ME3 LINE L1 5760 5885 -277 2000 134 0 0 chr11 69214903 69215201 -79568271 + AluSx SINE Alu 1 298 -14 2091 94 21 3 chr11 69215276 69215562 -79567910 + AluSc SINE Alu 1 291 -18 1993 110 7 17 chr11 69215672 69215836 -79567636 - AluSg SINE Alu -14 296 135 2204 66 28 10 chr11 69215836 69216125 -79567347 - AluY SINE Alu -17 294 1 1993 110 7 17 chr11 69216125 69216259 -79567213 - AluSg SINE Alu -175 135 1 2089 133 7 0 chr11 69216320 69216628 -79566844 - AluSx SINE Alu -2 310 1 452 225 181 12 chr11 69216716 69216876 -79566596 - MIR SINE MIR -13 249 63 613 187 0 107 chr11 69216891 69216966 -79566506 - MLT1A1 LTR MaLR 0 365 284 2120 95 7 10 chr11 69216966 69217260 -79566212 + AluSc SINE Alu 1 293 -16 613 187 0 107 chr11 69217260 69217371 -79566101 - MLT1A1 LTR MaLR -81 284 199 255 109 0 91 chr11 69217488 69217543 -79565929 - FLAM_A SINE Alu 0 133 84 920 233 29 5 chr11 69217543 69217749 -79565723 - AluJb SINE Alu -101 211 1 250 125 0 0 chr11 69217749 69217789 -79565683 - MSTC LTR MaLR -209 156 117 281 42 42 42 chr11 69217823 69217871 -79565601 - MSTC LTR MaLR -380 48 1 224 275 58 14 chr11 69218780 69218849 -79564623 + MIR3 SINE MIR 85 156 -52 687 247 43 0 chr11 69218890 69219052 -79564420 - MIR SINE MIR -46 216 48 633 184 80 16 chr11 69219061 69219186 -79564286 + FLAM_A SINE Alu 1 133 0 2293 96 3 10 chr11 69219297 69219611 -79563861 - AluSx SINE Alu 0 312 1 2357 80 0 0 chr11 69219612 69219914 -79563558 - AluSq SINE Alu -11 302 1 487 366 53 0 chr11 69220002 69220283 -79563189 + L2 LINE L2 2844 3139 -174 2365 82 0 0 chr11 69220544 69220847 -79562625 + AluY SINE Alu 1 303 -8 1981 114 35 0 chr11 69221047 69221336 -79562136 - AluSx SINE Alu -13 299 1 553 260 181 0 chr11 69221341 69221518 -79561954 - MIR SINE MIR -45 217 9 281 207 17 0 chr11 69221729 69221787 -79561685 - MIR SINE MIR -123 139 81 202 222 89 0 chr11 69221806 69221851 -79561621 + L2 LINE L2 3150 3198 -74 1915 124 7 14 chr11 69221868 69222184 -79561288 - AluSx SINE Alu 0 312 1 188 258 8 113 chr11 69222244 69222368 -79561104 + MIR SINE MIR 150 260 -2 238 361 63 38 chr11 69222783 69222941 -79560531 - MIR SINE MIR -48 214 53 2268 83 10 0 chr11 69223247 69223547 -79559925 + AluSg SINE Alu 1 303 -7 285 313 10 10 chr11 69224178 69224274 -79559198 - MIR SINE MIR -72 136 41 413 205 9 27 chr11 69224957 69225069 -79558403 + L1MC5 LINE L1 7817 7926 -35 27 19 0 57 chr11 69225074 69225094 -79558378 + AT_rich Low_complexity Low_complexity 1 21 -29 1819 127 11 0 chr11 69225094 69225361 -79558111 + AluSx SINE Alu 21 290 -22 483 100 0 0 chr11 69225361 69225431 -79558041 + (TA)n Simple_repeat Simple_repeat 2 71 0 27 19 0 57 chr11 69225431 69225462 -79558010 + AT_rich Low_complexity Low_complexity 19 50 0 241 264 0 0 chr11 69225822 69225875 -79557597 - L2 LINE L2 0 3313 3261 2229 87 0 10 chr11 69226036 69226334 -79557138 + AluSg SINE Alu 1 295 -15 336 280 11 32 chr11 69226366 69226459 -79557013 + L2 LINE L2 3223 3313 0 263 333 19 58 chr11 69226527 69226683 -79556789 - L2 LINE L2 -232 3040 2891 605 218 135 0 chr11 69226721 69226877 -79556595 + MIR SINE MIR 1 177 -85 992 173 0 12 chr11 69226879 69227041 -79556431 + FRAM SINE Alu 1 159 -17 207 361 28 0 chr11 69227042 69227114 -79556358 + MIR SINE MIR 173 246 -16 376 267 112 43 chr11 69227458 69227645 -79555827 - MIR SINE MIR 0 262 63 2132 131 0 7 chr11 69228166 69228464 -79555008 - AluSq SINE Alu -17 296 1 2362 104 7 0 chr11 69229469 69229768 -79553704 - AluSx SINE Alu -6 306 6 1763 174 0 21 chr11 69229922 69230204 -79553268 - AluJo SINE Alu -36 276 1 2601 67 0 6 chr11 69230265 69230577 -79552895 + AluY SINE Alu 1 310 -1 2087 106 10 32 chr11 69231104 69231416 -79552056 + AluSx SINE Alu 1 305 -7 541 186 64 0 chr11 69231423 69231563 -79551909 + L1MA7 LINE L1 6139 6287 -4 543 167 0 0 chr11 69231636 69231720 -79551752 + FAM SINE Alu 80 163 -22 26 0 0 0 chr11 69231724 69231750 -79551722 + AT_rich Low_complexity Low_complexity 1 26 0 891 236 159 23 chr11 69231752 69232220 -79551252 - L2 LINE L2 -247 3066 2535 209 294 76 22 chr11 69232282 69232374 -79551098 - MIR3 SINE MIR -17 191 95 2478 80 0 3 chr11 69235029 69235328 -79548144 - AluSp SINE Alu -15 298 1 1533 151 26 11 chr11 69235332 69235604 -79547868 - L1MB7 LINE L1 -47 6137 5862 1056 129 55 6 chr11 69235717 69235880 -79547592 - AluSg/x SINE Alu -18 294 124 382 43 0 0 chr11 69235880 69235926 -79547546 - U4 snRNA snRNA -81 64 19 1192 97 0 7 chr11 69235926 69236080 -79547392 - AluSq SINE Alu -160 153 1 398 247 151 27 chr11 69236080 69236358 -79547114 + L2 LINE L2 2879 3308 -5 2310 75 11 0 chr11 69236459 69236741 -79546731 - AluSx SINE Alu -25 287 3 2622 55 0 3 chr11 69240410 69240719 -79542753 - AluY SINE Alu -3 308 1 25 51 0 0 chr11 69241122 69241161 -79542311 + AT_rich Low_complexity Low_complexity 1 39 0 2262 102 20 0 chr11 69241161 69241455 -79542017 - AluSx SINE Alu -12 300 1 721 181 5 109 chr11 69241830 69242023 -79541449 - AluJb SINE Alu -3 309 137 2124 123 7 3 chr11 69242228 69242530 -79540942 - AluSq SINE Alu -10 303 1 2105 106 17 20 chr11 69242767 69243069 -79540403 - AluSq SINE Alu -12 301 1 2020 137 0 7 chr11 69243075 69243360 -79540112 - AluSx SINE Alu -2 310 28 249 250 110 66 chr11 69244319 69244455 -79539017 + MIR SINE MIR 51 192 -70 1655 206 0 16 chr11 69250654 69250960 -79532512 + AluJo SINE Alu 1 301 -11 1580 187 17 3 chr11 69251171 69251465 -79532007 + AluJb SINE Alu 13 310 -2 597 139 37 0 chr11 69251519 69251627 -79531845 - FLAM_A SINE Alu -10 132 21 374 263 168 0 chr11 69251627 69251764 -79531708 + MIR SINE MIR 41 200 -62 2420 102 0 0 chr11 69251834 69252137 -79531335 - AluSq SINE Alu -10 303 1 2438 64 3 10 chr11 69252148 69252446 -79531026 - AluY SINE Alu -15 296 1 228 340 33 39 chr11 69252454 69252510 -79530962 - MIR SINE MIR -107 155 100 1977 116 53 0 chr11 69252510 69252794 -79530678 - AluSx SINE Alu -13 299 1 228 340 33 39 chr11 69252794 69252890 -79530582 - MIR SINE MIR -162 100 4 2328 103 0 3 chr11 69253470 69253772 -79529700 + AluSx SINE Alu 1 301 -11 193 280 68 90 chr11 69253915 69254052 -79529420 + MIR SINE MIR 31 163 -63 1556 163 61 24 chr11 69254070 69254364 -79529108 - AluSg SINE Alu -5 305 1 1967 143 7 3 chr11 69254392 69254693 -79528779 + AluSp SINE Alu 2 303 -10 2280 107 0 10 chr11 69254768 69255077 -79528395 - AluY SINE Alu -5 306 1 768 254 57 5 chr11 69255142 69255335 -79528137 + MIR SINE MIR 14 216 -46 321 282 127 21 chr11 69255515 69255657 -79527815 + L2 LINE L2 3112 3268 -4 217 336 199 19 chr11 69255670 69255982 -79527490 - L2 LINE L2 -1492 1822 1455 706 256 141 0 chr11 69256266 69256493 -79526979 - MIR SINE MIR -1 261 3 307 275 107 21 chr11 69256497 69256661 -79526811 + MIR SINE MIR 4 145 -63 2380 84 14 0 chr11 69256844 69257141 -79526331 - AluSq SINE Alu -12 301 1 2233 123 0 0 chr11 69257341 69257643 -79525829 + AluSx SINE Alu 1 302 -10 182 181 60 172 chr11 69257702 69257818 -79525654 - MIR3 SINE MIR -6 202 100 293 182 117 84 chr11 69258821 69258947 -79524525 + MER53 DNA DNA 30 163 -26 2584 57 0 0 chr11 69258947 69259244 -79524228 + AluSq SINE Alu 1 297 -16 293 182 117 84 chr11 69259244 69259271 -79524201 + MER53 DNA DNA 163 188 -1 265 318 127 0 chr11 69260051 69260177 -79523295 - MIR SINE MIR -10 252 111 2333 108 0 0 chr11 69260205 69260501 -79522971 + AluSx SINE Alu 1 296 -16 1762 180 10 7 chr11 69260996 69261290 -79522182 + AluJo SINE Alu 4 298 -14 341 230 79 63 chr11 69261325 69261451 -79522021 - MIR3 SINE MIR -7 201 74 2288 108 32 16 chr11 69261626 69261995 -79521477 - THE1C LTR MaLR 0 375 1 2120 114 7 10 chr11 69263076 69263366 -79520106 - AluSq SINE Alu -22 291 3 913 146 0 0 chr11 69263874 69264004 -79519468 + FLAM_C SINE Alu 1 130 -13 1774 178 17 0 chr11 69264008 69264300 -79519172 + AluSx SINE Alu 1 297 -15 2239 113 0 0 chr11 69264301 69264594 -79518878 + AluSc SINE Alu 1 293 -16 2475 98 0 0 chr11 69264869 69265176 -79518296 - AluSq SINE Alu -6 307 1 208 304 0 29 chr11 69265178 69265247 -79518225 - L3 LINE CR1 -21 1556 1490 767 277 23 43 chr11 69265386 69265642 -79517830 - L3 LINE CR1 -47 1530 1280 569 282 104 0 chr11 69265987 69266189 -79517283 - MIR SINE MIR 0 262 40 1893 181 0 7 chr11 69267377 69267681 -79515791 - AluJb SINE Alu -10 302 1 2365 115 0 0 chr11 69267753 69268058 -79515414 - AluSx SINE Alu -7 305 1 243 88 0 0 chr11 69268170 69268204 -79515268 + (CTG)n Simple_repeat Simple_repeat 2 35 0 648 324 149 7 chr11 69268363 69268827 -79514645 - L2 LINE L2 -60 3212 2682 421 296 85 44 chr11 69268831 69269101 -79514371 - L2 LINE L2 -1120 2194 1908 2077 22 0 0 chr11 69269101 69269326 -79514146 - AluYb8 SINE Alu -7 311 87 421 296 85 44 chr11 69269326 69269372 -79514100 - L2 LINE L2 -1406 1908 1865 1385 292 80 42 chr11 69269410 69270101 -79513371 + L2 LINE L2 2187 2903 -411 2146 125 0 31 chr11 69270107 69270428 -79513044 - AluY SINE Alu 0 311 1 2274 112 0 0 chr11 69271222 69271516 -79511956 + AluSx SINE Alu 1 294 -18 725 193 165 0 chr11 69271633 69271809 -79511663 - MER3 DNA MER1_type -4 205 1 2225 118 3 3 chr11 69271870 69272174 -79511298 - AluSx SINE Alu -6 306 3 1677 108 135 8 chr11 69272843 69273103 -79510369 - AluSg1 SINE Alu -16 293 1 318 106 0 0 chr11 69273165 69273212 -79510260 + (TG)n Simple_repeat Simple_repeat 2 48 0 2218 100 0 32 chr11 69273553 69273864 -79509608 - AluSx SINE Alu -11 301 1 869 108 78 0 chr11 69275451 69275580 -79507892 - AluSq SINE Alu -39 274 136 2453 82 0 0 chr11 69275582 69275885 -79507587 - AluSq SINE Alu -10 303 1 697 105 0 0 chr11 69276198 69276293 -79507179 - AluJ/FLAM SINE Alu -216 96 2 1210 152 5 9 chr11 69276293 69276504 -79506968 - L1MB7 LINE L1 -109 6075 5866 2230 126 10 0 chr11 69276504 69276813 -79506659 - AluSx SINE Alu 0 312 1 972 177 59 12 chr11 69276817 69277143 -79506329 - L1MB7 LINE L1 -683 5491 5149 694 236 0 0 chr11 69277174 69277318 -79506154 + FRAM SINE Alu 1 144 -32 200 297 125 31 chr11 69277323 69277451 -79506021 + MIR SINE MIR 87 226 -36 404 290 51 7 chr11 69277575 69277713 -79505759 + L2 LINE L2 3169 3312 -1 293 114 0 0 chr11 69277739 69277783 -79505689 + Alu SINE Alu 244 287 -15 2159 73 0 76 chr11 69277804 69277915 -79505557 + AluY SINE Alu 1 119 -192 225 0 0 0 chr11 69277915 69277940 -79505532 + (TCTCCC)n Simple_repeat Simple_repeat 1 25 0 8562 27 10 273 chr11 69277945 69279775 -79503697 + SVA Other Other 38 1385 -1 2159 73 0 76 chr11 69279775 69279973 -79503499 + AluY SINE Alu 123 292 -19 305 337 0 31 chr11 69279973 69280060 -79503412 + L1MC4 LINE L1 6623 6708 -1334 1211 119 6 17 chr11 69280074 69280250 -79503222 + FRAM SINE Alu 1 166 -10 2225 133 0 0 chr11 69280251 69280559 -79502913 + AluSx SINE Alu 3 310 -2 344 292 44 29 chr11 69284420 69284557 -79498915 - MIR3 SINE MIR -27 181 43 2479 75 0 3 chr11 69284742 69285047 -79498425 + AluY SINE Alu 3 306 -5 1987 158 3 0 chr11 69285157 69285461 -79498011 + AluJb SINE Alu 1 305 -7 706 291 90 8 chr11 69285678 69285912 -79497560 + MIR SINE MIR 9 261 -1 217 279 57 57 chr11 69286632 69286754 -79496718 + L2 LINE L2 2571 2692 -622 1811 153 4 0 chr11 69286762 69287030 -79496442 - AluSx SINE Alu -43 269 1 2628 47 0 3 chr11 69287044 69287343 -79496129 - AluY SINE Alu -13 298 1 240 341 22 55 chr11 69287379 69287536 -79495936 - L2 LINE L2 -88 3184 3034 872 270 54 0 chr11 69287536 69287777 -79495695 + MIR SINE MIR 3 256 -6 1479 152 132 48 chr11 69287815 69287840 -79495632 - L1MB8 LINE L1 -5 6173 6152 2383 92 0 0 chr11 69287840 69288134 -79495338 + AluY SINE Alu 1 294 -17 2535 61 0 0 chr11 69288134 69288429 -79495043 + AluY SINE Alu 1 295 -16 1479 152 132 48 chr11 69288429 69288451 -79495021 - L1MB8 LINE L1 -26 6152 6133 959 148 110 161 chr11 69288451 69288768 -79494704 + AluJo SINE Alu 2 302 0 1479 152 132 48 chr11 69288768 69288884 -79494588 - L1MB8 LINE L1 -45 6133 6028 2171 101 0 39 chr11 69288884 69289191 -79494281 + AluSx SINE Alu 1 295 -17 1479 152 132 48 chr11 69289191 69289465 -79494007 - L1MB8 LINE L1 -150 6028 5696 272 314 76 0 chr11 69289552 69289657 -79493815 - MIR SINE MIR -81 181 69 519 272 58 44 chr11 69290330 69290499 -79492973 - MIR SINE MIR -46 216 42 1989 127 3 54 chr11 69290499 69290813 -79492659 + AluSx SINE Alu 1 298 -14 519 272 58 44 chr11 69290813 69290849 -79492623 - MIR SINE MIR -220 42 8 208 400 17 17 chr11 69290911 69291031 -79492441 + L2 LINE L2 3104 3223 -49 252 0 0 0 chr11 69291046 69291074 -79492398 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 241 237 206 0 chr11 69291354 69291451 -79492021 - L2 LINE L2 -15 3257 3141 262 253 0 11 chr11 69291666 69291753 -79491719 + MER113 DNA MER1_type? 6 91 -430 2286 116 3 0 chr11 69291755 69292056 -79491416 - AluSq SINE Alu -11 302 1 1524 191 22 47 chr11 69292191 69292220 -79491252 - AluJo SINE Alu -1 311 283 222 37 0 0 chr11 69292220 69292247 -79491225 + (TCCCC)n Simple_repeat Simple_repeat 5 31 0 1524 191 22 47 chr11 69292247 69292536 -79490936 - AluJo SINE Alu -29 283 1 1014 128 0 0 chr11 69292565 69292698 -79490774 - AluSq/x SINE Alu -180 133 1 1272 213 189 4 chr11 69292804 69293239 -79490233 - MLT1F1 LTR MaLR -3 564 54 248 256 44 94 chr11 69293627 69293787 -79489685 + L2 LINE L2 2625 2776 -538 2112 133 0 13 chr11 69293957 69294092 -79489380 + AluSx SINE Alu 2 137 -165 1911 124 10 39 chr11 69294092 69294228 -79489244 + AluSx SINE Alu 1 139 -173 2461 57 0 0 chr11 69294228 69294541 -79488931 + AluY SINE Alu 1 313 0 1911 124 10 39 chr11 69294541 69294744 -79488728 + AluSx SINE Alu 139 312 0 2112 133 0 13 chr11 69294744 69294910 -79488562 + AluSx SINE Alu 137 299 -3 2074 156 0 9 chr11 69297242 69297557 -79485915 + AluJb SINE Alu 1 312 0 620 125 0 0 chr11 69298309 69298397 -79485075 - AluJ/FRAM SINE Alu -5 307 220 2051 133 0 17 chr11 69298400 69298694 -79484778 + AluSx SINE Alu 5 293 -19 2468 67 7 0 chr11 69298701 69299000 -79484472 + AluY SINE Alu 1 301 -10 1539 201 9 38 chr11 69299146 69299278 -79484194 + AluJo SINE Alu 1 135 -177 2467 53 0 0 chr11 69299278 69299614 -79483858 + AluY SINE Alu 1 336 0 1539 201 9 38 chr11 69299614 69299799 -79483673 + AluJo SINE Alu 135 310 -2 939 186 0 0 chr11 69299802 69299958 -79483514 + AluJb SINE Alu 156 311 -1 523 155 0 12 chr11 69299962 69300046 -79483426 + AluJo/FLAM SINE Alu 44 126 -186 2076 80 48 21 chr11 69300046 69300335 -79483137 - AluSq SINE Alu -16 297 1 264 230 40 0 chr11 69300337 69300411 -79483061 - HAL1 LINE L1 -159 2348 2272 1795 198 37 41 chr11 69300823 69301313 -79482159 - MLT1D LTR MaLR -17 488 1 422 206 103 65 chr11 69301533 69301688 -79481784 + MER20B DNA MER1_type 1 161 -622 829 202 18 30 chr11 69301739 69301889 -79481583 - AluJo SINE Alu -27 285 136 2079 125 3 58 chr11 69301889 69302217 -79481255 - AluSx SINE Alu -2 310 1 829 202 18 30 chr11 69302217 69302234 -79481238 - AluJo SINE Alu -176 136 120 1602 159 15 67 chr11 69302244 69302428 -79481044 - AluJo SINE Alu -2 310 149 2213 117 7 3 chr11 69302428 69302726 -79480746 - AluSx SINE Alu -7 305 7 1602 159 15 67 chr11 69302726 69302868 -79480604 - AluJo SINE Alu -163 149 1 1836 160 11 11 chr11 69302956 69303243 -79480229 - AluJb SINE Alu -21 291 5 1317 166 12 95 chr11 69303345 69303659 -79479813 + AluJb SINE Alu 1 287 -25 183 42 0 0 chr11 69303659 69303683 -79479789 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 1317 166 12 95 chr11 69303683 69303706 -79479766 + AluJb SINE Alu 287 310 -2 228 284 0 37 chr11 69303719 69303800 -79479672 - MIR3 SINE MIR -38 170 93 792 211 14 7 chr11 69303952 69304094 -79479378 - FRAM SINE Alu -26 150 8 261 0 0 0 chr11 69304105 69304134 -79479338 + (TG)n Simple_repeat Simple_repeat 2 30 0 205 200 22 0 chr11 69304134 69304173 -79479299 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 2236 87 0 7 chr11 69304176 69304465 -79479007 - AluY SINE Alu -24 287 1 261 298 19 10 chr11 69304633 69304737 -79478735 + AluSp/q SINE Alu 199 303 0 427 267 133 7 chr11 69304741 69304891 -79478581 - L1M4 LINE L1 -1521 4449 4281 640 255 82 22 chr11 69305011 69305242 -79478230 + MLT1I LTR MaLR 19 263 -146 529 244 30 36 chr11 69305242 69305410 -79478062 - L1M4 LINE L1 -5724 167 1 383 323 16 16 chr11 69305410 69305534 -79477938 - L1M4 LINE L1 -1654 4492 4369 540 278 22 93 chr11 69305536 69305666 -79477806 - L1M4 LINE L1 -1854 4292 4154 2258 118 0 3 chr11 69305666 69305962 -79477510 - AluSx SINE Alu -16 296 2 540 278 22 93 chr11 69305962 69306110 -79477362 - L1M4 LINE L1 -1992 4154 4050 898 145 0 0 chr11 69306110 69306241 -79477231 + FLAM_C SINE Alu 1 131 -2 540 278 22 93 chr11 69306241 69306371 -79477101 - L1M4 LINE L1 -2096 4050 3912 1306 204 0 12 chr11 69306372 69306617 -79476855 + AluJb SINE Alu 1 242 -70 225 229 123 38 chr11 69306666 69306902 -79476570 - L1ME4a LINE L1 -155 5966 5711 403 227 36 55 chr11 69306967 69307077 -79476395 + MIR SINE MIR 154 261 -1 427 301 113 81 chr11 69307078 69307213 -79476259 - L1ME4a LINE L1 -413 5708 5579 1876 117 70 11 chr11 69307213 69307486 -79475986 + AluSx SINE Alu 1 289 -23 427 301 113 81 chr11 69307486 69307696 -79475776 - L1ME4a LINE L1 -542 5579 5352 627 119 0 0 chr11 69307721 69307805 -79475667 - AluJ/FLAM SINE Alu -227 85 2 649 172 123 0 chr11 69307964 69308086 -79475386 + AluJb SINE Alu 164 300 -12 520 216 86 0 chr11 69308086 69308189 -79475283 + L1M4 LINE L1 4648 4767 -1379 7479 27 18 2 chr11 69308189 69309768 -79473704 + L1PA4 LINE L1 4563 6155 0 520 216 86 0 chr11 69309768 69309803 -79473669 + L1M4 LINE L1 4767 4798 -1348 1370 284 61 100 chr11 69309868 69310172 -79473300 - L1MEc LINE L1 -4514 1882 1568 2113 143 0 7 chr11 69310172 69310480 -79472992 - AluSx SINE Alu 0 312 7 1370 284 61 100 chr11 69310480 69311137 -79472335 - L1MEc LINE L1 -4828 1568 887 1823 147 10 14 chr11 69311137 69311429 -79472043 - AluJo SINE Alu -8 304 14 1370 284 61 100 chr11 69311429 69312389 -79471083 - L1MEc LINE L1 -5509 887 36 1352 144 60 114 chr11 69312668 69312967 -79470505 + AluJo SINE Alu 1 283 -29 242 116 23 0 chr11 69312967 69313010 -79470462 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 368 288 44 79 chr11 69313120 69313349 -79470123 - L1MCa LINE L1 -4932 1494 1274 2050 172 57 31 chr11 69313349 69313444 -79470028 - L1MB7 LINE L1 -16 6168 6077 1514 155 29 97 chr11 69313444 69313623 -79469849 - AluJb SINE Alu -24 288 137 2489 80 0 10 chr11 69313623 69313937 -79469535 - AluY SINE Alu 0 311 1 1514 155 29 97 chr11 69313937 69314066 -79469406 - AluJb SINE Alu -175 137 1 2050 172 57 31 chr11 69314066 69314447 -79469025 - L1MB7 LINE L1 -107 6077 5680 310 233 188 38 chr11 69314449 69314582 -79468890 - L1MCa LINE L1 -5275 1332 1180 301 317 133 0 chr11 69314716 69314836 -79468636 - MIR SINE MIR -32 230 95 189 333 0 0 chr11 69315084 69315141 -79468331 - L2 LINE L2 -214 3058 3002 252 336 19 19 chr11 69315519 69315626 -79467846 + L2 LINE L2 3158 3264 -8 358 247 11 0 chr11 69315628 69315721 -79467751 - MIR SINE MIR -107 155 62 417 290 7 41 chr11 69315936 69316081 -79467391 + MIR SINE MIR 21 160 -102 4722 36 2 2 chr11 69316215 69316774 -79466698 - L1PA4 LINE L1 -3 6152 5594 2424 72 27 0 chr11 69316776 69317068 -79466404 - AluY SINE Alu -11 300 1 37 0 0 0 chr11 69317077 69317114 -79466358 + AT_rich Low_complexity Low_complexity 1 37 0 1826 180 16 16 chr11 69317120 69317431 -79466041 + AluSx SINE Alu 1 311 -1 2246 102 0 3 chr11 69317436 69317745 -79465727 + AluSp SINE Alu 3 310 0 2458 52 0 10 chr11 69317822 69318113 -79465359 - AluY SINE Alu -23 288 1 447 143 44 0 chr11 69318682 69318773 -79464699 + MER53 DNA DNA 1 95 -94 * 471 100 38 0 chr11 69318703 69318783 -79464689 - MER53 DNA DNA -12 177 95 2092 121 10 3 chr11 69319082 69319379 -79464093 - AluSx SINE Alu -12 300 2 2045 120 20 23 chr11 69319666 69319967 -79463505 + AluSx SINE Alu 1 300 -12 775 126 14 84 chr11 69319995 69320138 -79463334 + FLAM_C SINE Alu 1 133 0 2370 82 0 3 chr11 69320397 69320700 -79462772 - AluSg SINE Alu -8 302 1 1690 172 28 7 chr11 69320854 69321145 -79462327 + AluJo SINE Alu 1 297 -15 198 0 0 0 chr11 69321403 69321425 -79462047 + (TTA)n Simple_repeat Simple_repeat 1 22 0 873 129 0 0 chr11 69321425 69321541 -79461931 - FLAM_C SINE Alu -27 116 1 1546 208 10 14 chr11 69321543 69321837 -79461635 - AluJo SINE Alu -19 293 1 285 302 21 52 chr11 69321908 69322004 -79461468 - L2 LINE L2 -11 3261 3169 1707 86 23 55 chr11 69322303 69322560 -79460912 + AluSg SINE Alu 1 249 -61 996 181 11 11 chr11 69322687 69322869 -79460603 + AluJb SINE Alu 120 301 -11 2619 41 0 16 chr11 69323136 69323452 -79460020 + AluY SINE Alu 1 311 0 26 50 0 0 chr11 69324271 69324311 -79459161 + AT_rich Low_complexity Low_complexity 1 40 0 2312 92 16 10 chr11 69324311 69324615 -79458857 - AluSx SINE Alu -6 306 1 313 332 114 15 chr11 69324684 69324886 -79458586 - L1MEc LINE L1 -5422 974 753 1767 147 3 25 chr11 69325373 69325508 -79457964 + AluJb SINE Alu 1 137 -175 2330 84 3 0 chr11 69325508 69325794 -79457678 + AluSp SINE Alu 9 295 -18 1767 147 3 25 chr11 69325794 69325944 -79457528 + AluJb SINE Alu 137 280 -32 2146 132 10 0 chr11 69326007 69326303 -79457169 - AluSx SINE Alu -13 299 1 717 204 35 106 chr11 69326385 69326462 -79457010 - MIR SINE MIR 0 262 181 733 96 165 17 chr11 69326462 69326577 -79456895 - FLAM_C SINE Alu 0 133 2 717 204 35 106 chr11 69326577 69326725 -79456747 - MIR SINE MIR -81 181 53 1588 149 4 12 chr11 69326726 69326981 -79456491 - AluJo SINE Alu -53 259 7 230 0 33 0 chr11 69328117 69328147 -79455325 + (TG)n Simple_repeat Simple_repeat 2 32 0 590 127 19 183 chr11 69328643 69329004 -79454468 - AluJb SINE Alu -9 303 2 2026 123 3 3 chr11 69329393 69329694 -79453778 + AluSx SINE Alu 1 301 -11 2303 230 109 46 chr11 69329717 69329815 -79453657 - HAL1 LINE L1 -78 2429 2339 1701 185 0 37 chr11 69329815 69329994 -79453478 - AluJo SINE Alu 0 312 149 2191 110 0 10 chr11 69329994 69330304 -79453168 - AluSc SINE Alu -2 307 1 1701 185 0 37 chr11 69330304 69330448 -79453024 - AluJo SINE Alu -163 149 1 2303 230 109 46 chr11 69330448 69331263 -79452209 - HAL1 LINE L1 -168 2339 1453 2111 123 0 3 chr11 69331263 69331564 -79451908 - AluSx SINE Alu -12 300 1 2303 230 109 46 chr11 69331564 69331597 -79451875 - HAL1 LINE L1 -1054 1453 1423 1971 127 3 3 chr11 69331658 69331950 -79451522 + AluSx SINE Alu 1 292 -20 474 274 174 35 chr11 69331957 69332216 -79451256 - MLT1J2 LTR MaLR -46 404 110 1358 151 3 39 chr11 69332216 69332528 -79450944 - AluY SINE Alu -10 301 1 2041 123 0 3 chr11 69332536 69332828 -79450644 - AluSx SINE Alu -21 291 1 266 318 127 0 chr11 69332856 69332982 -79450490 + MIR SINE MIR 111 252 -10 271 207 17 0 chr11 69333894 69333952 -79449520 - MIR SINE MIR -123 139 81 203 222 89 0 chr11 69333971 69334016 -79449456 + L2 LINE L2 3150 3198 -74 1882 124 7 7 chr11 69334040 69334349 -79449123 - AluSx SINE Alu 0 309 1 208 287 0 64 chr11 69334409 69334503 -79448969 + MIR SINE MIR 150 237 -25 217 354 63 38 chr11 69334949 69335107 -79448365 - MIR SINE MIR -48 214 53 1743 146 10 3 chr11 69335413 69335707 -79447765 + AluSg SINE Alu 1 296 -14 2095 95 21 0 chr11 69335817 69336102 -79447370 - AluSc SINE Alu -18 291 1 426 248 176 62 chr11 69336136 69336177 -79447295 - L1ME3A LINE L1 -198 5972 5937 1947 128 3 3 chr11 69336177 69336474 -79446998 - AluSx SINE Alu -15 297 1 426 248 176 62 chr11 69336474 69336642 -79446830 - L1ME3A LINE L1 -233 5937 5739 1013 130 6 12 chr11 69336644 69336806 -79446666 - AluSq SINE Alu -19 294 134 1377 164 10 32 chr11 69336807 69337117 -79446355 - AluSg SINE Alu -7 303 1 2186 76 0 0 chr11 69337117 69337393 -79446079 - AluSq SINE Alu -37 276 1 455 228 44 0 chr11 69337405 69337519 -79445953 + HAL1 LINE L1 1681 1799 -708 434 218 62 28 chr11 69337598 69337777 -79445695 + HAL1 LINE L1 1987 2171 -336 407 233 17 25 chr11 69337785 69337905 -79445567 + HAL1 LINE L1 2222 2340 -167 1711 161 0 14 chr11 69341474 69341753 -79441719 - AluJo SINE Alu -37 275 1 456 244 43 0 chr11 69341764 69341879 -79441593 - MLT1F LTR MaLR 0 567 448 972 97 103 0 chr11 69341882 69342047 -79441425 - LTR47A LTR ERVL -10 442 261 1167 218 27 23 chr11 69342307 69342569 -79440903 - MLT1F LTR MaLR -120 422 160 1391 170 35 42 chr11 69342576 69342682 -79440790 + AluJo SINE Alu 9 114 -198 2635 121 46 22 chr11 69342682 69343057 -79440415 + MSTA LTR MaLR 1 388 -40 2027 119 3 7 chr11 69343057 69343359 -79440113 - AluSx SINE Alu -11 301 1 2635 121 46 22 chr11 69343359 69343397 -79440075 + MSTA LTR MaLR 388 424 -4 1391 170 35 42 chr11 69343397 69343578 -79439894 + AluJo SINE Alu 114 294 -18 450 218 40 0 chr11 69343586 69343687 -79439785 - MLT1F LTR MaLR -447 143 39 1278 203 112 8 chr11 69343708 69343799 -79439673 - LTR43 LTR ERV1 -24 578 498 2055 120 0 7 chr11 69343799 69344116 -79439356 + AluSg SINE Alu 1 310 0 1278 203 112 8 chr11 69344116 69344389 -79439083 - LTR43 LTR ERV1 -104 498 176 427 205 0 36 chr11 69344426 69344538 -79438934 - AluSx SINE Alu 0 309 202 998 95 14 14 chr11 69344541 69344688 -79438784 - AluSx SINE Alu -165 147 1 2046 114 3 28 chr11 69344710 69345027 -79438445 - AluSg SINE Alu -1 309 1 1363 143 34 115 chr11 69345027 69345222 -79438250 - AluJo SINE Alu -12 300 140 1907 159 13 0 chr11 69345222 69345530 -79437942 - AluSq SINE Alu -1 312 1 1363 143 34 115 chr11 69345530 69345655 -79437817 - AluJo SINE Alu -172 140 6 1691 180 3 22 chr11 69345665 69346015 -79437457 - AluJo SINE Alu 0 346 3 2161 123 0 0 chr11 69346277 69346586 -79436886 + AluSq SINE Alu 1 309 -4 1965 114 48 0 chr11 69346606 69346896 -79436576 - AluSg SINE Alu -4 306 3 940 331 130 11 chr11 69346896 69347418 -79436054 + L2 LINE L2 2390 2977 -337 2033 98 29 23 chr11 69347418 69347829 -79435643 - AluY SINE Alu 0 415 3 183 80 0 0 chr11 69347884 69347909 -79435563 + (G)n Simple_repeat Simple_repeat 1 25 0 793 235 12 12 chr11 69348046 69348216 -79435256 + AluJo SINE Alu 125 294 -18 227 284 0 37 chr11 69348360 69348441 -79435031 + MIR3 SINE MIR 93 170 -38 702 164 14 131 chr11 69348454 69348477 -79434995 - AluJb SINE Alu -3 309 285 183 42 0 0 chr11 69348477 69348501 -79434971 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 702 164 14 131 chr11 69348501 69348691 -79434781 - AluJb SINE Alu -27 285 121 2143 93 0 7 chr11 69348751 69349041 -79434431 - AluSx SINE Alu -24 288 1 2466 59 0 0 chr11 69349185 69349488 -79433984 - AluY SINE Alu -8 303 1 2277 88 0 0 chr11 69349488 69349782 -79433690 - AluY SINE Alu -17 294 1 833 274 54 0 chr11 69349845 69350086 -79433386 - MIR SINE MIR -6 256 3 235 357 16 50 chr11 69350086 69350243 -79433229 + L2 LINE L2 3034 3184 -88 2421 53 0 7 chr11 69350279 69350581 -79432891 + AluY SINE Alu 1 300 -11 445 308 31 8 chr11 69351764 69351894 -79431578 - MIR SINE MIR -108 154 22 1718 117 17 47 chr11 69352029 69352327 -79431145 + AluJo SINE Alu 9 297 -15 817 193 77 17 chr11 69352946 69353127 -79430345 + AluJo SINE Alu 120 311 -1 1495 151 24 65 chr11 69355127 69355269 -79428203 + AluJb SINE Alu 3 149 -163 2168 97 20 0 chr11 69355269 69355568 -79427904 + AluSq SINE Alu 1 305 -8 1944 93 93 0 chr11 69355574 69355852 -79427620 + AluSq SINE Alu 1 304 -9 1495 151 24 65 chr11 69355852 69355994 -79427478 + AluJb SINE Alu 154 282 -30 844 123 0 0 chr11 69356094 69356216 -79427256 - AluSq/x SINE Alu -190 122 1 1979 111 3 32 chr11 69356295 69356610 -79426862 + AluSg1 SINE Alu 1 306 -3 816 160 0 0 chr11 69357511 69357642 -79425830 - AluSg/x SINE Alu -7 303 173 2081 115 3 3 chr11 69358593 69358898 -79424574 + AluSp SINE Alu 1 305 -8 1891 142 3 3 chr11 69358972 69359274 -79424198 - AluSp SINE Alu -10 303 2 1450 170 68 20 chr11 69359302 69359596 -79423876 + AluSp SINE Alu 1 308 -5 197 280 68 90 chr11 69359614 69359751 -79423721 - MIR SINE MIR -63 145 31 2235 96 0 3 chr11 69359894 69360196 -79423276 - AluSx SINE Alu -11 301 1 228 340 33 39 chr11 69360776 69360872 -79422600 + MIR SINE MIR 4 100 -162 1868 113 53 0 chr11 69360872 69361156 -79422316 + AluSx SINE Alu 1 299 -13 228 340 33 39 chr11 69361156 69361212 -79422260 + MIR SINE MIR 100 155 -107 2189 80 3 10 chr11 69361220 69361519 -79421953 + AluY SINE Alu 1 297 -14 2129 125 0 0 chr11 69361530 69361834 -79421638 + AluSx SINE Alu 1 304 -8 210 225 0 0 chr11 69365568 69365608 -79417864 + CT-rich Low_complexity Low_complexity 2 41 0 2037 64 3 96 chr11 69366571 69366907 -79416565 - AluSq SINE Alu 0 307 1 204 363 142 15 chr11 69367920 69368124 -79415348 + L3 LINE CR1 1261 1490 -87 2312 74 3 0 chr11 69368124 69368420 -79415052 - AluSp SINE Alu -16 297 1 1307 151 98 42 chr11 69369413 69369678 -79413794 - AluJb SINE Alu -32 280 1 826 154 40 0 chr11 69371847 69371996 -79411476 + L1PA16 LINE L1 6011 6165 -1 611 257 20 0 chr11 69372015 69372163 -79411309 + LTR41 LTR ERVL 1 151 -622 285 283 118 26 chr11 69372342 69372494 -79410978 + LTR41 LTR ERVL 496 661 -112 663 218 24 99 chr11 69372504 69372572 -79410900 + MER58A DNA MER1_type 30 102 -2318 1810 133 3 24 chr11 69372572 69372866 -79410606 - AluJb SINE Alu -24 288 1 663 218 24 99 chr11 69372866 69373008 -79410464 + MER58A DNA MER1_type 102 224 0 1985 108 27 24 chr11 69373046 69373343 -79410129 - AluSx SINE Alu -14 298 1 201 282 14 14 chr11 69374026 69374097 -79409375 + L2 LINE L2 2977 3047 -225 606 267 25 77 chr11 69374244 69374622 -79408850 + LTR16C LTR ERVL 87 491 0 400 342 70 63 chr11 69374766 69375207 -79408265 + L2 LINE L2 2828 3271 -1 1106 210 4 44 chr11 69375427 69375656 -79407816 + MER58A DNA MER1_type 2 221 -3 1822 159 13 3 chr11 69377252 69377561 -79405911 - AluJo SINE Alu 0 312 1 758 175 0 8 chr11 69377605 69377725 -79405747 - FLAM_C SINE Alu -18 125 7 2035 109 7 3 chr11 69379473 69379767 -79403705 - AluSg1 SINE Alu -13 296 2 1987 125 3 0 chr11 69379772 69380061 -79403411 - AluSx SINE Alu -22 290 1 442 314 165 16 chr11 69380061 69380430 -79403042 - L2 LINE L2 -601 2713 2290 823 99 8 0 chr11 69380827 69380948 -79402524 + AluJb SINE Alu 1 122 -190 223 27 27 27 chr11 69380948 69380985 -79402487 + (TAA)n Simple_repeat Simple_repeat 2 38 0 1882 104 17 17 chr11 69380995 69381294 -79402178 + AluSg SINE Alu 1 299 -11 2568 35 3 0 chr11 69381398 69381708 -79401764 - AluY SINE Alu 0 311 1 1019 159 0 11 chr11 69381795 69381977 -79401495 - AluSg/x SINE Alu -9 301 122 379 43 0 0 chr11 69381977 69382023 -79401449 - U4 snRNA snRNA -81 64 19 1083 103 0 13 chr11 69382023 69382178 -79401294 - AluSq SINE Alu -160 153 1 184 327 69 0 chr11 69382183 69382284 -79401188 + L2 LINE L2 3136 3243 -29 408 318 118 36 chr11 69382454 69382532 -79400940 + MIR SINE MIR 23 93 -169 2068 129 0 0 chr11 69382532 69382835 -79400637 - AluSq SINE Alu -10 303 1 408 318 118 36 chr11 69382835 69382976 -79400496 + MIR SINE MIR 93 260 -2 210 225 0 0 chr11 69385530 69385570 -79397902 + CT-rich Low_complexity Low_complexity 2 41 0 2018 62 3 97 chr11 69386526 69386858 -79396614 - AluSq SINE Alu 0 307 5 2312 74 3 0 chr11 69388084 69388380 -79395092 - AluSp SINE Alu -16 297 1 1307 151 98 42 chr11 69389373 69389638 -79393834 - AluJb SINE Alu -32 280 1 826 154 40 0 chr11 69391807 69391956 -79391516 + L1PA16 LINE L1 6011 6165 -1 611 257 20 0 chr11 69391975 69392123 -79391349 + LTR41 LTR ERVL 1 151 -622 285 283 118 26 chr11 69392302 69392454 -79391018 + LTR41 LTR ERVL 496 661 -112 663 218 24 99 chr11 69392464 69392532 -79390940 + MER58A DNA MER1_type 30 102 -2318 1903 131 3 14 chr11 69392532 69392823 -79390649 - AluJb SINE Alu -24 288 1 663 218 24 99 chr11 69392823 69392965 -79390507 + MER58A DNA MER1_type 102 224 0 1985 108 27 24 chr11 69393003 69393300 -79390172 - AluSx SINE Alu -14 298 1 201 282 14 14 chr11 69393983 69394054 -79389418 + L2 LINE L2 2977 3047 -225 584 269 25 77 chr11 69394201 69394579 -79388893 + LTR16C LTR ERVL 87 491 0 400 342 70 63 chr11 69394723 69395164 -79388308 + L2 LINE L2 2828 3271 -1 1106 210 4 44 chr11 69395384 69395613 -79387859 + MER58A DNA MER1_type 2 221 -3 1822 159 13 3 chr11 69397246 69397555 -79385917 - AluJo SINE Alu 0 312 1 758 175 0 8 chr11 69397597 69397717 -79385755 - FLAM_C SINE Alu -18 125 7 2143 101 0 3 chr11 69399470 69399767 -79383705 - AluSg1 SINE Alu -13 296 1 902 226 0 0 chr11 69399791 69399959 -79383513 - MER58B DNA MER1_type -3 338 171 2440 64 0 0 chr11 69399959 69400256 -79383216 + AluY SINE Alu 1 297 -14 254 265 103 59 chr11 69400557 69400693 -79382779 + MIR SINE MIR 51 192 -70 1499 207 3 16 chr11 69406885 69407190 -79376282 + AluJo SINE Alu 1 301 -11 1467 188 17 3 chr11 69407401 69407694 -79375778 + AluJb SINE Alu 13 309 -3 646 139 37 0 chr11 69407747 69407855 -79375617 - FLAM_A SINE Alu -10 132 21 371 263 168 0 chr11 69407855 69407992 -79375480 + MIR SINE MIR 41 200 -62 2261 87 0 23 chr11 69408063 69408373 -79375099 - AluSq SINE Alu -10 303 1 760 240 13 0 chr11 69408393 69408547 -79374925 + FRAM SINE Alu 1 154 -22 643 167 33 25 chr11 69408553 69408673 -79374799 - FLAM_A SINE Alu -12 121 1 312 167 0 0 chr11 69408718 69408772 -79374700 + Alu SINE Alu 248 301 0 1030 196 172 24 chr11 69408786 69408922 -79374550 - Tigger2a DNA MER2_type -2328 380 265 2136 124 0 0 chr11 69408922 69409221 -79374251 + AluSx SINE Alu 1 299 -13 1030 196 172 24 chr11 69409221 69409415 -79374057 - Tigger2a DNA MER2_type -2443 265 1 520 190 43 26 chr11 69409755 69409871 -79373601 - FLAM_A SINE Alu -13 120 3 455 257 318 10 chr11 69410036 69410205 -79373267 - HAL1 LINE L1 -15 2492 2376 2052 69 61 4 chr11 69410205 69410482 -79372990 + AluY SINE Alu 1 293 -18 455 257 318 10 chr11 69410482 69410608 -79372864 - HAL1 LINE L1 -131 2376 2106 1423 186 122 15 chr11 69410609 69410937 -79372535 + MLT1A1 LTR MaLR 1 363 -2 2317 67 0 3 chr11 69410950 69411248 -79372224 + AluY SINE Alu 1 297 -14 459 242 10 0 chr11 69411253 69411352 -79372120 - HAL1 LINE L1 -623 1884 1785 606 191 26 0 chr11 69411574 69411689 -79371783 - AluSg/x SINE Alu -26 286 169 2294 91 0 0 chr11 69411709 69412016 -79371456 - AluY SINE Alu -4 307 1 1863 127 3 7 chr11 69412018 69412310 -79371162 - AluSq SINE Alu -22 291 1 777 225 37 21 chr11 69412698 69412885 -79370587 + AluJo SINE Alu 114 303 -9 819 238 22 0 chr11 69413063 69413248 -79370224 - AluJo SINE Alu -38 274 86 1875 120 45 0 chr11 69413299 69413591 -79369881 + AluSx SINE Alu 1 305 -7 1838 135 10 0 chr11 69413773 69414062 -79369410 - AluSq SINE Alu -20 293 2 1571 183 3 14 chr11 69414068 69414358 -79369114 - AluJb SINE Alu -25 287 1 24 0 0 0 chr11 69414364 69414388 -79369084 + AT_rich Low_complexity Low_complexity 1 24 0 1995 98 14 11 chr11 69414388 69414673 -79368799 - AluSg SINE Alu -24 286 1 225 299 180 16 chr11 69414712 69414906 -79368566 + L2 LINE L2 3088 3313 0 241 122 98 0 chr11 69415331 69415372 -79368100 + L2 LINE L2 3222 3266 -6 207 100 0 0 chr11 69416392 69416422 -79367050 + (GGAAA)n Simple_repeat Simple_repeat 5 34 0 216 185 0 0 chr11 69418661 69418715 -79364757 + (CAG)n Simple_repeat Simple_repeat 2 55 0 23 0 0 0 chr11 69421418 69421441 -79362031 + AT_rich Low_complexity Low_complexity 1 23 0 692 199 0 0 chr11 69421576 69421707 -79361765 - MER46A DNA MER2_type -62 174 44 21 0 0 0 chr11 69422159 69422180 -79361292 + AT_rich Low_complexity Low_complexity 1 21 0 1821 100 54 0 chr11 69425216 69425495 -79357977 + AluSq SINE Alu 1 294 -19 827 185 133 14 chr11 69426072 69426283 -79357189 - AluJo SINE Alu -23 289 54 2225 81 0 10 chr11 69426283 69426578 -79356894 + AluSx SINE Alu 1 292 -20 1396 171 18 18 chr11 69426690 69426964 -79356508 - AluJo SINE Alu -23 289 16 243 0 0 0 chr11 69426984 69427011 -79356461 + (T)n Simple_repeat Simple_repeat 1 27 0 2276 62 7 0 chr11 69427201 69427491 -79355981 - AluY SINE Alu -19 292 1 743 253 91 65 chr11 69429362 69429547 -79353925 + L2 LINE L2 2553 2732 -581 2043 121 0 10 chr11 69429547 69429852 -79353620 - AluSx SINE Alu -10 302 1 2135 100 10 10 chr11 69429854 69430153 -79353319 - AluSx SINE Alu -13 299 1 743 253 91 65 chr11 69430153 69430608 -79352864 + L2 LINE L2 2732 3241 -72 2235 105 0 0 chr11 69432404 69432700 -79350772 - AluSx SINE Alu -16 296 1 365 296 45 0 chr11 69432710 69432798 -79350674 - L1ME4a LINE L1 -224 5897 5806 1746 90 0 8 chr11 69433269 69433503 -79349969 - AluSg/x SINE Alu -16 296 65 757 58 126 0 chr11 69433503 69433606 -79349866 - AluSg SINE Alu -194 116 1 629 281 122 0 chr11 69435290 69435486 -79347986 + MIR SINE MIR 26 245 -17 2280 88 0 0 chr11 69435489 69435785 -79347687 + AluSg SINE Alu 1 296 -14 1729 158 28 37 chr11 69435910 69436232 -79347240 - 7SLRNA srpRNA srpRNA -1 319 1 385 239 200 7 chr11 69436248 69436403 -79347069 - MIR3 SINE MIR -6 202 18 323 179 0 0 chr11 69436458 69436525 -79346947 - L1MB7 LINE L1 -21 6163 6097 672 135 77 0 chr11 69436554 69436658 -79346814 - FLAM_C SINE Alu -24 119 8 676 201 13 13 chr11 69436658 69436817 -79346655 - L1MB7 LINE L1 -74 6110 5952 185 100 33 0 chr11 69438108 69438138 -79345334 - MER5C DNA MER1_type -6 318 288 279 375 62 0 chr11 69438317 69438429 -79345043 - MER5C DNA MER1_type -205 119 1 2162 78 11 3 chr11 69439420 69439731 -79343741 + AluY SINE Alu 1 313 0 453 305 33 0 chr11 69439817 69439968 -79343504 + MIR SINE MIR 79 234 -28 211 313 38 5 chr11 69442684 69442794 -79340678 - L2 LINE L2 -1 3312 3136 459 219 92 49 chr11 69443264 69443428 -79340044 - MER5B DNA MER1_type -3 175 5 192 77 0 0 chr11 69443518 69443544 -79339928 + (GGCTG)n Simple_repeat Simple_repeat 3 28 0 1613 82 0 5 chr11 69445029 69445236 -79338236 + AluSq SINE Alu 5 210 -103 305 200 38 50 chr11 69445473 69445553 -79337919 - MIR SINE MIR -82 180 102 2533 48 0 7 chr11 69445554 69445863 -79337609 + AluY SINE Alu 1 307 -4 210 225 0 0 chr11 69448743 69448783 -79334689 + CT-rich Low_complexity Low_complexity 2 41 0 1850 118 44 0 chr11 69449744 69450039 -79333433 - AluSq SINE Alu 0 307 1 2664 13 3 0 chr11 69450049 69450351 -79333121 - AluYa5 SINE Alu -8 303 1 1915 159 7 3 chr11 69451339 69451641 -79331831 + AluJb SINE Alu 1 303 -9 2751 19 3 0 chr11 69502270 69502587 -79280885 - AluYb8 SINE Alu 0 318 1 2000 143 13 0 chr11 69502611 69502919 -79280553 - AluSx SINE Alu 0 312 1 840 141 0 70 chr11 69502925 69503067 -79280405 - FLAM_C SINE Alu 0 133 2 1246 242 57 18 chr11 69503166 69503567 -79279905 + HAL1 LINE L1 2055 2471 -36 2161 112 0 28 chr11 69503654 69503976 -79279496 + AluSq SINE Alu 1 313 0 684 178 11 92 chr11 69504116 69504170 -79279302 - AluJo SINE Alu -125 187 130 1920 109 77 0 chr11 69504170 69504444 -79279028 - AluSq SINE Alu -18 295 1 2301 79 3 7 chr11 69504446 69504750 -79278722 - AluSg SINE Alu -7 303 1 684 178 11 92 chr11 69504750 69504866 -79278606 - AluJo SINE Alu -183 129 28 2716 13 3 0 chr11 69505131 69505437 -79278035 + AluYb8 SINE Alu 1 307 -11 225 0 0 0 chr11 69505445 69505470 -79278002 + (T)n Simple_repeat Simple_repeat 1 25 0 24 77 0 0 chr11 69505862 69505914 -79277558 + GC_rich Low_complexity Low_complexity 1 52 0 25 31 0 0 chr11 69506021 69506053 -79277419 + GC_rich Low_complexity Low_complexity 1 32 0 2166 96 14 0 chr11 69510547 69510840 -79272632 + AluSx SINE Alu 1 297 -15 373 325 44 9 chr11 69510840 69510954 -79272518 + MER5A DNA MER1_type 44 161 -28 493 158 0 103 chr11 69511406 69511482 -79271990 + L1MB8 LINE L1 6048 6104 -74 2176 122 0 0 chr11 69511482 69511778 -79271694 - AluSx SINE Alu -16 296 1 493 158 0 103 chr11 69511778 69511847 -79271625 + L1MB8 LINE L1 6104 6178 0 325 333 194 0 chr11 69512137 69512323 -79271149 + MIR SINE MIR 20 241 -21 210 279 127 67 chr11 69512390 69512555 -79270917 - L2 LINE L2 -97 3175 3001 1071 178 10 10 chr11 69512574 69512782 -79270690 - AluSg/x SINE Alu 0 312 105 309 200 14 0 chr11 69512888 69512958 -79270514 - L1MB3 LINE L1 -179 6004 5934 2120 93 7 3 chr11 69512993 69513283 -79270189 - AluSx SINE Alu -21 291 1 508 125 0 42 chr11 69513426 69513546 -79269926 + (GGGGA)n Simple_repeat Simple_repeat 3 117 0 273 323 154 31 chr11 69514202 69514397 -79269075 - L2 LINE L2 -468 2846 2628 236 273 0 19 chr11 69515266 69515362 -79268110 - MIR SINE MIR -59 149 97 406 281 75 27 chr11 69516422 69516446 -79267026 + L2 LINE L2 3159 3180 -133 2060 101 0 77 chr11 69516446 69516784 -79266688 - AluSx SINE Alu 0 312 1 406 281 75 27 chr11 69516784 69516905 -79266567 + L2 LINE L2 3180 3311 -2 245 286 0 0 chr11 69516904 69516960 -79266512 - MIR SINE MIR -103 105 50 * 1963 84 0 11 chr11 69517170 69517463 -79266009 + AluSx SINE Alu 26 315 0 1921 246 135 38 chr11 69517822 69518000 -79265472 - HAL1 LINE L1 -701 1806 1647 2042 136 10 0 chr11 69518000 69518301 -79265171 + AluSx SINE Alu 1 304 -8 1921 246 135 38 chr11 69518301 69519335 -79264137 - HAL1 LINE L1 -860 1647 322 2207 112 0 3 chr11 69519335 69519639 -79263833 - AluSq SINE Alu -10 303 1 1921 246 135 38 chr11 69519639 69519961 -79263511 - HAL1 LINE L1 -2185 322 32 483 227 34 17 chr11 69521211 69521330 -79262142 + MER63 DNA MER1_type 30 776 -60 2222 73 0 33 chr11 69521644 69521946 -79261526 - AluSg SINE Alu -17 293 2 665 277 33 69 chr11 69522455 69522820 -79260652 + L1ME LINE L1 5238 5615 -555 2229 84 6 34 chr11 69522820 69523142 -79260330 + AluSp SINE Alu 1 313 0 665 277 33 69 chr11 69523142 69523156 -79260316 + L1ME LINE L1 5615 5628 -542 2187 92 13 10 chr11 69523156 69523459 -79260013 + AluSx SINE Alu 5 308 -4 665 277 33 69 chr11 69523459 69523531 -79259941 + L1ME LINE L1 5628 5674 -496 285 198 42 31 chr11 69523562 69523658 -79259814 - L1MC5 LINE L1 -35 7926 7830 2126 111 3 16 chr11 69523711 69524018 -79259454 + AluSx SINE Alu 4 306 -6 405 224 0 0 chr11 69524043 69524128 -79259344 + AluSp/q SINE Alu 226 310 -3 1597 181 95 9 chr11 69524140 69524476 -79258996 - MLT1A1 LTR MaLR 0 365 1 2152 120 0 10 chr11 69524838 69525147 -79258325 + AluSx SINE Alu 1 306 -6 625 189 9 9 chr11 69525148 69525259 -79258213 - AluJo/FLAM SINE Alu -201 111 1 299 180 0 0 chr11 69525420 69525470 -79258002 - Alu SINE Alu -251 50 1 2147 130 0 3 chr11 69525476 69525777 -79257695 - AluSq SINE Alu -13 300 1 254 234 10 62 chr11 69526082 69526162 -79257310 + MER5A DNA MER1_type 43 133 -56 1460 70 0 11 chr11 69526163 69526379 -79257093 - AluSq SINE Alu 0 313 109 231 333 0 14 chr11 69526479 69526617 -79256855 + AluYb8 SINE Alu 172 307 -1 198 0 0 0 chr11 69526617 69526639 -79256833 + (TA)n Simple_repeat Simple_repeat 2 23 0 3747 131 73 34 chr11 69526730 69527402 -79256070 + LTR34 LTR ERV1 2 699 0 346 221 52 0 chr11 69527475 69527552 -79255920 - MIR SINE MIR -101 161 81 22 94 0 0 chr11 69528416 69528480 -79254992 + GC_rich Low_complexity Low_complexity 1 64 0 189 359 60 43 chr11 69528734 69528851 -79254621 - MIR SINE MIR -58 150 32 1856 118 7 10 chr11 69528910 69529199 -79254273 - AluJb SINE Alu -7 305 18 193 364 53 8 chr11 69529526 69529658 -79253814 - L2 LINE L2 -9 3304 3167 2349 92 0 0 chr11 69529945 69530248 -79253224 - AluSq SINE Alu -10 303 1 814 170 7 7 chr11 69530501 69530514 -79252958 - AluJo SINE Alu -177 135 123 2190 94 0 7 chr11 69530514 69530813 -79252659 + AluSg SINE Alu 1 297 -13 814 170 7 7 chr11 69530813 69530934 -79252538 - AluJo SINE Alu -188 124 1 272 314 33 16 chr11 69531004 69531125 -79252347 + MIR SINE MIR 88 210 -52 274 210 215 90 chr11 69531180 69531380 -79252092 - MIR SINE MIR -3 259 35 2290 119 0 3 chr11 69531865 69532175 -79251297 - AluSx SINE Alu -3 309 1 381 227 103 14 chr11 69533053 69533197 -79250275 - LTR61 LTR ERV1 0 595 343 22 0 0 0 chr11 69533225 69533247 -79250225 + AT_rich Low_complexity Low_complexity 1 22 0 1423 244 22 50 chr11 69533932 69534396 -79249076 + MLT1C LTR MaLR 9 459 -8 214 325 89 24 chr11 69534815 69534938 -79248534 + L3 LINE CR1 1336 1466 -111 531 211 4 14 chr11 69535338 69535484 -79247988 + MIR SINE MIR 72 214 -48 345 284 111 56 chr11 69535602 69535764 -79247708 - L2 LINE L2 -76 3196 3026 1085 93 0 37 chr11 69535764 69535925 -79247547 - AluSg/x SINE Alu 0 310 156 869 142 6 68 chr11 69536025 69536047 -79247425 - L1MB7 LINE L1 -232 5952 5930 2401 86 3 3 chr11 69536047 69536350 -79247122 - AluSp SINE Alu -10 303 1 869 142 6 68 chr11 69536350 69536503 -79246969 - L1MB7 LINE L1 -254 5930 5788 364 188 43 0 chr11 69536507 69536576 -79246896 + Tigger3(Golem) DNA MER2_type 1 72 -2957 1085 155 121 24 chr11 69536587 69536794 -79246678 - AluJo SINE Alu -32 280 54 4644 187 73 9 chr11 69536816 69537356 -79246116 - L1MB7 LINE L1 -864 5282 4778 2253 66 66 3 chr11 69537356 69537642 -79245830 - AluY SINE Alu -7 304 1 4644 187 73 9 chr11 69537642 69538177 -79245295 - L1MB7 LINE L1 -1368 4778 4138 299 262 68 97 chr11 69538370 69538649 -79244823 + LTR33 LTR ERVL 54 321 -200 2256 109 0 10 chr11 69538649 69538952 -79244520 - AluSx SINE Alu -12 300 1 299 262 68 97 chr11 69538952 69539042 -79244430 + LTR33 LTR ERVL 321 412 -109 210 275 218 7 chr11 69539537 69539679 -79243793 - MIR SINE MIR -12 250 79 34 0 0 0 chr11 69540600 69540634 -79242838 + AT_rich Low_complexity Low_complexity 1 34 0 1479 80 10 40 chr11 69540634 69540835 -79242637 + AluSq SINE Alu 1 195 -118 311 329 66 26 chr11 69541485 69541637 -79241835 + L2 LINE L2 3115 3272 0 1607 169 0 89 chr11 69541705 69541860 -79241612 + AluJb SINE Alu 6 120 -192 2413 87 7 0 chr11 69541860 69542159 -79241313 + AluSp SINE Alu 1 301 -12 1607 169 0 89 chr11 69542159 69542317 -79241155 + AluJb SINE Alu 120 291 -21 646 145 12 0 chr11 69542557 69542678 -79240794 + MLT1A1 LTR MaLR 256 364 -1 1609 188 71 65 chr11 69543016 69543103 -79240369 + MLT1C LTR MaLR 1 86 -381 2187 96 13 10 chr11 69543103 69543404 -79240068 + AluSq SINE Alu 1 302 -11 1609 188 71 65 chr11 69543404 69543780 -79239692 + MLT1C LTR MaLR 86 467 0 225 313 195 40 chr11 69544096 69544747 -79238725 - L2 LINE L2 -337 2977 2226 1067 275 129 31 chr11 69544954 69545635 -79237837 + HAL1 LINE L1 595 1342 -1165 909 236 166 5 chr11 69545715 69546088 -79237384 - MLT1D LTR MaLR -72 433 1 935 278 57 23 chr11 69546121 69546563 -79236909 + HAL1 LINE L1 1508 1964 -543 2344 85 3 0 chr11 69546688 69546982 -79236490 + AluSg SINE Alu 1 295 -15 2172 108 0 39 chr11 69547596 69547903 -79235569 - AluSx SINE Alu -17 295 1 1692 217 121 2 chr11 69548057 69548528 -79234944 - L1M4c LINE L1 -4813 1833 1307 2031 95 0 8 chr11 69548531 69548795 -79234677 - AluSc SINE Alu -7 302 41 780 150 222 0 chr11 69548795 69548975 -79234497 - L1M4c LINE L1 -5273 1269 1050 691 195 7 13 chr11 69548988 69549142 -79234330 - L1M4c LINE L1 -6374 168 16 1447 191 61 24 chr11 69549857 69550187 -79233285 - MER2 DNA MER2_type -2 342 1 2521 90 3 0 chr11 69550282 69550593 -79232879 + AluSp SINE Alu 1 312 -1 1065 224 88 18 chr11 69550629 69550959 -79232513 + L1M3 LINE L1 4935 5287 -859 941 163 0 0 chr11 69550959 69551100 -79232372 - AluJb SINE Alu -13 299 159 1534 189 7 24 chr11 69551166 69551484 -79231988 + AluJb SINE Alu 2 312 0 1733 133 53 50 chr11 69551484 69551565 -79231907 + L1M3 LINE L1 5325 5404 -779 2052 115 41 14 chr11 69551565 69551860 -79231612 + AluSx SINE Alu 1 303 -9 1733 133 53 50 chr11 69551860 69552115 -79231357 + L1M3 LINE L1 5404 5662 -521 242 170 0 75 chr11 69552252 69552305 -79231167 + MIR SINE MIR 29 77 -131 288 268 273 29 chr11 69552313 69552518 -79230954 + MIR SINE MIR 2 256 -6 2341 113 75 43 chr11 69552524 69552565 -79230907 - MSTA LTR MaLR 0 428 390 2239 117 0 22 chr11 69552565 69552701 -79230771 + AluSx SINE Alu 1 138 -174 2275 78 0 11 chr11 69552701 69553008 -79230464 + AluSg SINE Alu 1 304 0 2239 117 0 22 chr11 69553008 69553187 -79230285 + AluSx SINE Alu 138 310 -2 2341 113 75 43 chr11 69553187 69553387 -79230085 - MSTA LTR MaLR -38 390 198 1963 151 0 3 chr11 69553387 69553678 -79229794 - AluSx SINE Alu -22 290 1 2341 113 75 43 chr11 69553678 69553850 -79229622 - MSTA LTR MaLR -230 198 1 2284 100 10 10 chr11 69553901 69554202 -79229270 - AluSg SINE Alu -9 301 1 1815 160 0 0 chr11 69554345 69554607 -79228865 - AluJb SINE Alu -16 296 35 186 245 75 0 chr11 69554626 69554679 -79228793 - L3 LINE CR1 -3 1574 1518 768 197 0 0 chr11 69554703 69554835 -79228637 - FLAM_A SINE Alu -1 132 1 613 264 71 42 chr11 69554842 69555054 -79228418 - MIR SINE MIR -32 230 13 286 304 42 79 chr11 69555712 69555734 -79227738 + L2 LINE L2 2968 2989 -283 1138 207 223 15 chr11 69555734 69556062 -79227410 - MSTD LTR MaLR 0 396 1 286 304 42 79 chr11 69556062 69556253 -79227219 + L2 LINE L2 2989 3173 -99 1592 211 133 41 chr11 69556318 69556715 -79226757 - MLT1E LTR MaLR -2 591 129 1741 150 138 46 chr11 69556715 69557030 -79226442 + LTR47A LTR ERVL 1 364 -88 2318 109 0 0 chr11 69557030 69557334 -79226138 + AluSx SINE Alu 3 306 -6 1741 150 138 46 chr11 69557334 69557432 -79226040 + LTR47A LTR ERVL 364 452 0 1592 211 133 41 chr11 69557432 69557575 -79225897 - MLT1E LTR MaLR -464 129 1 374 283 28 9 chr11 69557601 69557707 -79225765 + MIR SINE MIR 43 150 -112 296 241 26 99 chr11 69557711 69557784 -79225688 - MER104 DNA Tc2 -1721 177 100 2007 132 10 19 chr11 69557784 69558094 -79225378 + AluJo SINE Alu 1 307 -5 296 241 26 99 chr11 69558094 69558211 -79225261 - MER104 DNA Tc2 -1798 100 1 1026 122 0 0 chr11 69558867 69559006 -79224466 + AluSq/x SINE Alu 1 139 -173 1979 142 6 25 chr11 69559010 69559328 -79224144 + AluSx SINE Alu 1 312 0 883 146 0 15 chr11 69559396 69559533 -79223939 + AluJo SINE Alu 1 135 -177 2201 110 3 20 chr11 69559533 69559833 -79223639 + AluSg1 SINE Alu 1 295 -14 2347 103 0 7 chr11 69560599 69560901 -79222571 + AluSx SINE Alu 1 300 -12 1221 139 0 0 chr11 69560901 69561074 -79222398 + AluSg/x SINE Alu 132 304 -6 189 0 0 0 chr11 69561797 69561818 -79221654 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 872 173 6 32 chr11 69561822 69561978 -79221494 - AluJb SINE Alu -31 281 130 1134 98 12 35 chr11 69561978 69562151 -79221321 - AluSg/x SINE Alu 0 310 142 1435 118 0 24 chr11 69562251 69562462 -79221010 + AluSg/x SINE Alu 105 310 0 890 173 0 0 chr11 69562478 69562617 -79220855 + FLAM_C SINE Alu 2 140 -3 189 107 0 0 chr11 69562650 69562678 -79220794 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 1289 188 0 51 chr11 69562735 69562991 -79220481 - AluSx SINE Alu -69 243 1 7682 92 8 15 chr11 69563061 69564139 -79219333 - MER11C LTR ERVK 0 1071 1 183 244 0 0 chr11 69564571 69564612 -79218860 - L2 LINE L2 -8 3305 3265 327 326 0 0 chr11 69564670 69564756 -79218716 + L1MC/D LINE L1 5709 5794 -327 2298 137 39 0 chr11 69564833 69565220 -79218252 - L1MB7 LINE L1 -62 6122 5721 1246 117 0 28 chr11 69565221 69565401 -79218071 - AluSp SINE Alu -16 297 123 2400 94 0 3 chr11 69565667 69565974 -79217498 + AluSq SINE Alu 1 306 -7 2219 109 7 3 chr11 69566333 69566636 -79216836 + AluY SINE Alu 1 304 -7 2124 123 3 0 chr11 69566746 69567052 -79216420 - AluSp SINE Alu 0 307 1 2302 118 0 0 chr11 69567590 69567894 -79215578 - AluSx SINE Alu -8 304 1 879 127 0 60 chr11 69567894 69568044 -79215428 - FLAM_C SINE Alu -2 141 1 254 301 57 94 chr11 69568057 69568515 -79214957 + L1MEd LINE L1 98 538 -5581 591 248 81 68 chr11 69568609 69568688 -79214784 + L1ME3A LINE L1 5623 5700 -470 2379 118 0 0 chr11 69568688 69568993 -79214479 + AluSx SINE Alu 2 306 -6 591 248 81 68 chr11 69568993 69569236 -79214236 + L1ME3A LINE L1 5700 5949 -221 2351 110 0 10 chr11 69569325 69569634 -79213838 + AluSx SINE Alu 2 307 -5 229 302 0 0 chr11 69569864 69569927 -79213545 + L1MC/D LINE L1 5836 5898 -1910 2573 64 0 6 chr11 69569963 69570274 -79213198 + AluY SINE Alu 1 309 -2 226 304 0 0 chr11 69572206 69572262 -79211210 - L2 LINE L2 -51 3221 3166 217 164 33 6 chr11 69572647 69572689 -79210783 + MIR SINE MIR 109 195 -13 442 264 155 0 chr11 69572706 69572835 -79210637 - MIR SINE MIR -110 152 4 1923 103 103 4 chr11 69572861 69573132 -79210340 - AluSx SINE Alu -14 298 1 210 301 8 73 chr11 69573854 69573977 -79209495 + MIR SINE MIR 25 139 -69 2108 130 34 0 chr11 69574034 69574326 -79209146 + AluJb SINE Alu 1 302 -10 971 171 6 0 chr11 69574328 69574492 -79208980 + AluJo/FRAM SINE Alu 136 300 -12 2101 133 49 65 chr11 69574640 69574746 -79208726 + L1MB3 LINE L1 5699 5805 -378 2457 71 0 3 chr11 69574746 69575042 -79208430 - AluY SINE Alu -16 295 1 2101 133 49 65 chr11 69575042 69575071 -79208401 + L1MB3 LINE L1 5805 5833 -350 2395 91 3 0 chr11 69575071 69575367 -79208105 + AluSp SINE Alu 1 297 -16 2599 50 0 7 chr11 69575368 69575669 -79207803 + AluY SINE Alu 2 300 -11 2101 133 49 65 chr11 69575669 69575981 -79207491 + L1MB3 LINE L1 5833 6143 -40 2375 77 3 13 chr11 69575981 69576280 -79207192 + AluSp SINE Alu 1 296 -17 2101 133 49 65 chr11 69576280 69576301 -79207171 + L1MB3 LINE L1 6143 6163 -20 562 198 58 0 chr11 69576325 69576446 -79207026 + MLT1A2 LTR MaLR 23 150 -215 434 171 24 0 chr11 69576450 69576532 -79206940 + AluSq SINE Alu 136 219 -94 682 186 35 28 chr11 69576561 69576706 -79206766 + MLT1A2 LTR MaLR 170 315 -59 2332 67 0 55 chr11 69576707 69577036 -79206436 + AluY SINE Alu 1 311 0 1305 107 68 5 chr11 69577045 69577250 -79206222 + AluSq SINE Alu 95 312 -1 2387 82 0 0 chr11 69577250 69577542 -79205930 + AluY SINE Alu 1 292 -19 2164 103 11 0 chr11 69577547 69577862 -79205610 + AluSx SINE Alu 1 318 0 310 182 0 15 chr11 69577862 69577928 -79205544 + MLT1A2 LTR MaLR 301 365 0 2873 16 3 0 chr11 69579055 69579368 -79204104 + AluYb8 SINE Alu 1 314 -4 1444 181 16 53 chr11 69579464 69579598 -79203874 + AluJb SINE Alu 1 138 -174 2134 103 32 3 chr11 69579598 69579880 -79203592 + AluSg SINE Alu 1 290 -20 1444 181 16 53 chr11 69579880 69580049 -79203423 + AluJb SINE Alu 138 293 -19 2841 201 76 17 chr11 69580121 69580551 -79202921 + L1ME1 LINE L1 5362 5765 -569 2103 69 94 14 chr11 69580551 69580826 -79202646 + AluY SINE Alu 1 297 -14 1537 162 70 63 chr11 69580828 69580930 -79202542 + AluJo SINE Alu 1 101 -211 2275 91 7 3 chr11 69580930 69581226 -79202246 + AluSx SINE Alu 1 297 -15 1043 165 105 15 chr11 69581225 69581261 -79202211 + AluJo SINE Alu 87 118 -194 1537 162 70 63 chr11 69581226 69581261 -79202211 + AluJo SINE Alu 101 134 -178 477 0 0 0 chr11 69581261 69581314 -79202158 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 1537 162 70 63 chr11 69581314 69581477 -79201995 + AluJo SINE Alu 134 304 -8 1043 165 105 15 chr11 69581314 69581477 -79201995 + AluJo SINE Alu 118 304 -8 2841 201 76 17 chr11 69581477 69581811 -79201661 + L1ME1 LINE L1 5765 6332 -2 1726 186 7 0 chr11 69581821 69582112 -79201360 + AluJb SINE Alu 17 309 -3 2227 69 0 17 chr11 69582223 69582543 -79200929 - AluSc SINE Alu 0 315 1 1855 65 102 0 chr11 69582662 69582937 -79200535 + AluSx SINE Alu 1 303 -9 26 50 0 0 chr11 69583275 69583315 -79200157 + AT_rich Low_complexity Low_complexity 1 40 0 191 234 0 43 chr11 69584038 69584085 -79199387 + MIR SINE MIR 109 153 -55 1163 101 0 30 chr11 69584721 69584857 -79198615 + AluSx SINE Alu 1 133 -179 2338 96 0 0 chr11 69584857 69585160 -79198312 + AluSc SINE Alu 1 303 -6 1163 101 0 30 chr11 69585160 69585191 -79198281 + AluSx SINE Alu 133 163 -149 2062 80 4 7 chr11 69585815 69586090 -79197382 - AluSp SINE Alu -39 274 1 423 306 22 0 chr11 69586204 69586338 -79197134 + MIR SINE MIR 105 241 -21 402 238 43 73 chr11 69587068 69587232 -79196240 + MIR SINE MIR 77 235 -27 2074 112 10 0 chr11 69587910 69588213 -79195259 + AluSq SINE Alu 1 306 -7 234 282 106 0 chr11 69588396 69588481 -79194991 - L2 LINE L2 0 3272 3179 2233 81 7 0 chr11 69589016 69589312 -79194160 - AluSq SINE Alu -10 303 6 633 217 0 0 chr11 69589465 69589585 -79193887 + FRAM SINE Alu 40 159 -17 886 292 85 40 chr11 69589585 69589776 -79193696 + MLT1H1 LTR MaLR 53 234 -321 1958 88 71 14 chr11 69589776 69590071 -79193401 + AluSq SINE Alu 2 313 0 886 292 85 40 chr11 69590071 69590328 -79193144 + MLT1H1 LTR MaLR 234 521 -34 1359 186 29 7 chr11 69590328 69590607 -79192865 - MLT1C LTR MaLR 0 467 183 837 216 0 17 chr11 69590607 69590783 -79192689 - AluJo/FRAM SINE Alu -6 306 134 2376 70 3 0 chr11 69590783 69591084 -79192388 - AluY SINE Alu -9 302 1 2016 110 3 52 chr11 69591094 69591420 -79192052 - AluSx SINE Alu -1 311 2 1769 152 53 0 chr11 69591421 69591704 -79191768 - AluJb SINE Alu -14 298 1 2228 107 0 0 chr11 69591708 69592008 -79191464 - AluSc SINE Alu -9 300 1 725 183 98 6 chr11 69592008 69592172 -79191300 - MLT1C LTR MaLR -283 184 6 2205 97 0 7 chr11 69592411 69592721 -79190751 + AluSx SINE Alu 1 308 -4 721 259 76 0 chr11 69593124 69593309 -79190163 + MIR SINE MIR 39 237 -25 213 353 44 0 chr11 69593327 69593395 -79190077 - MIR SINE MIR -78 184 114 2023 91 0 0 chr11 69593395 69593658 -79189814 - AluSx SINE Alu -6 306 44 289 288 79 36 chr11 69593670 69593809 -79189663 + L2 LINE L2 2936 3080 -192 1488 247 98 13 chr11 69593877 69594326 -79189146 + MLT1D LTR MaLR 13 499 -6 329 258 108 8 chr11 69594349 69594469 -79189003 + MLT1J2 LTR MaLR 275 447 -3 308 286 101 8 chr11 69594486 69594605 -79188867 + L2 LINE L2 3139 3268 -4 * 319 237 25 68 chr11 69594602 69594720 -79188752 - L2 LINE L2 -246 3026 2914 189 243 27 54 chr11 69594984 69595058 -79188414 + MIR SINE MIR 111 182 -80 2181 39 0 0 chr11 69595136 69595395 -79188077 - AluY SINE Alu -51 260 2 339 250 207 14 chr11 69595994 69596134 -79187338 - MIR3 SINE MIR -21 187 21 278 323 113 5 chr11 69596229 69596395 -79187077 + MIR SINE MIR 43 222 -40 616 231 220 0 chr11 69596450 69596623 -79186849 + MIR SINE MIR 10 220 -42 300 272 53 47 chr11 69596663 69596832 -79186640 + MIR SINE MIR 81 250 -12 209 319 126 28 chr11 69597255 69597509 -79185963 - L2 LINE L2 -178 3094 2816 2064 105 17 3 chr11 69597530 69597824 -79185648 + AluSx SINE Alu 1 298 -14 909 182 47 0 chr11 69597825 69597995 -79185477 + AluSg/x SINE Alu 132 309 -1 899 272 120 12 chr11 69598871 69599390 -79184082 + L2 LINE L2 2475 3055 -258 225 216 39 0 chr11 69599390 69599441 -79184031 + AluSp SINE Alu 114 166 -137 6466 120 197 82 chr11 69599441 69600962 -79182510 + pTR5 LTR ERV1 743 2437 -1 1610 138 37 0 chr11 69600962 69601230 -79182242 + AluSx SINE Alu 24 301 -11 484 229 93 29 chr11 69601273 69601413 -79182059 + L2 LINE L2 3159 3307 -6 2177 111 3 0 chr11 69601413 69601710 -79181762 + AluSp SINE Alu 1 298 -15 1196 104 0 0 chr11 69601918 69602081 -79181391 + AluSp SINE Alu 145 307 -6 295 238 163 0 chr11 69602515 69602595 -79180877 - L2 LINE L2 -7 3265 3173 1091 161 60 0 chr11 69602598 69602797 -79180675 - MER46A DNA MER2_type -25 211 1 771 154 141 90 chr11 69602799 69603052 -79180420 + L1MB8 LINE L1 5921 6180 0 477 289 28 0 chr11 69603382 69603524 -79179948 - MIR SINE MIR -104 158 13 218 266 35 91 chr11 69603614 69603757 -79179715 - L2 LINE L2 -17 3296 3162 183 347 14 0 chr11 69603774 69603846 -79179626 - L2 LINE L2 -253 3060 2988 2438 80 0 3 chr11 69604146 69604460 -79179012 - AluSq SINE Alu 0 313 1 203 328 31 0 chr11 69604581 69604645 -79178827 + MIR SINE MIR 94 159 -103 283 336 82 8 chr11 69604649 69604771 -79178701 + L1MC/D LINE L1 5618 5748 -2060 631 194 21 49 chr11 69605517 69605661 -79177811 - MIR SINE MIR -15 247 108 369 331 80 0 chr11 69605812 69605963 -79177509 - MIR SINE MIR -40 222 60 220 278 0 15 chr11 69606110 69606177 -79177295 + MIR SINE MIR 13 75 -133 554 124 0 82 chr11 69606382 69606479 -79176993 - AluSg/x SINE Alu -14 295 207 199 209 15 60 chr11 69606706 69606773 -79176699 + MIR SINE MIR 42 105 -103 766 223 27 21 chr11 69607154 69607202 -79176270 - MER53 DNA DNA 0 189 143 1969 110 7 0 chr11 69607202 69607508 -79175964 - AluSx SINE Alu 0 308 1 766 223 27 21 chr11 69607508 69607646 -79175826 - MER53 DNA DNA -46 143 1 460 296 137 22 chr11 69608137 69608414 -79175058 - Charlie8 DNA MER1_type -2107 310 2 778 248 143 9 chr11 69608811 69609041 -79174431 - MIR SINE MIR 0 262 2 2274 103 3 0 chr11 69609550 69609860 -79173612 - AluSx SINE Alu -1 311 1 374 261 17 25 chr11 69609969 69610088 -79173384 + MIR SINE MIR 22 139 -123 302 197 78 213 chr11 69610216 69610299 -79173173 + Charlie8 DNA MER1_type 24 117 -224 772 177 0 0 chr11 69610299 69610423 -79173049 + FLAM_A SINE Alu 1 124 -9 302 197 78 213 chr11 69610423 69610506 -79172966 + Charlie8 DNA MER1_type 117 149 -192 2330 86 3 3 chr11 69610506 69610819 -79172653 + AluSp SINE Alu 1 313 0 302 197 78 213 chr11 69610819 69610895 -79172577 + Charlie8 DNA MER1_type 149 234 -107 437 152 0 0 chr11 69610994 69611073 -79172399 - AluS SINE Alu -2 307 229 388 271 37 0 chr11 69611095 69611202 -79172270 - MIR3 SINE MIR -86 122 12 287 283 34 17 chr11 69611242 69611390 -79172082 - MIR SINE MIR -58 150 23 188 294 20 0 chr11 69611815 69611866 -79171606 + MIR SINE MIR 194 245 -17 278 308 197 0 chr11 69611895 69612012 -79171460 - MIR SINE MIR -115 147 8 248 209 154 134 chr11 69612426 69612627 -79170845 - MIR SINE MIR -12 250 46 361 309 0 40 chr11 69612643 69612792 -79170680 + MIR3 SINE MIR 4 146 -62 25 51 0 0 chr11 69613751 69613790 -79169682 + GC_rich Low_complexity Low_complexity 1 39 0 278 222 176 19 chr11 69614040 69614148 -79169324 + MIR SINE MIR 17 141 -67 474 259 155 5 chr11 69614259 69614452 -79169020 - MIR SINE MIR -29 233 12 1326 42 178 5 chr11 69614940 69615131 -79168341 + AluY SINE Alu 88 311 0 1535 111 172 4 chr11 69615486 69615748 -79167724 + AluSx SINE Alu 1 306 -6 1367 235 86 49 chr11 69615857 69616050 -79167422 + L1ME3A LINE L1 5655 5839 -331 2007 84 18 4 chr11 69616050 69616323 -79167149 + AluSx SINE Alu 14 290 -22 1367 235 86 49 chr11 69616323 69616618 -79166854 + L1ME3A LINE L1 5839 6161 -9 388 311 95 11 chr11 69616637 69616932 -79166540 + L2 LINE L2 2742 3061 -252 1759 115 7 7 chr11 69617151 69617420 -79166052 - AluJb SINE Alu -13 299 31 2196 128 38 46 chr11 69617420 69617577 -79165895 + THE1B LTR MaLR 1 158 -206 2312 84 3 0 chr11 69617577 69617873 -79165599 - AluSp SINE Alu -15 298 2 2196 128 38 46 chr11 69617873 69618082 -79165390 + THE1B LTR MaLR 158 364 0 2388 74 0 3 chr11 69618215 69618524 -79164948 - AluY SINE Alu -3 308 1 888 229 0 0 chr11 69618524 69618703 -79164769 - AluJo SINE Alu -14 298 120 406 113 0 16 chr11 69618711 69618773 -79164699 - MER66A LTR ERV1 -138 340 280 2244 92 0 3 chr11 69618790 69619085 -79164387 - AluSq SINE Alu -19 294 1 2015 112 35 0 chr11 69619092 69619377 -79164095 - AluSq SINE Alu -18 295 1 198 103 0 0 chr11 69619396 69619425 -79164047 + (T)n Simple_repeat Simple_repeat 1 29 0 326 143 0 0 chr11 69619430 69619479 -79163993 - MER66B LTR ERV1 -143 343 295 2627 45 0 0 chr11 69619488 69619834 -79163638 - AluY SINE Alu 0 346 1 1856 157 3 10 chr11 69619981 69620294 -79163178 - AluJb SINE Alu -1 311 1 256 325 17 0 chr11 69620294 69620414 -79163058 - L1ME LINE L1 -233 5888 5767 1741 113 65 34 chr11 69620731 69620869 -79162603 + AluSx SINE Alu 1 133 -179 2052 109 3 3 chr11 69620869 69621180 -79162292 + AluSp SINE Alu 1 311 0 1741 113 65 34 chr11 69621180 69621331 -79162141 + AluSx SINE Alu 133 300 -12 282 278 45 28 chr11 69621369 69621506 -79161966 + L1ME LINE L1 5691 5824 -297 1334 192 41 17 chr11 69621506 69621627 -79161845 + AluJo SINE Alu 1 118 -194 351 0 0 0 chr11 69621627 69621666 -79161806 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1334 192 41 17 chr11 69621666 69621684 -79161788 + AluJo SINE Alu 118 134 -178 2083 113 10 3 chr11 69621684 69621986 -79161486 + AluSx SINE Alu 6 309 -3 1334 192 41 17 chr11 69621986 69622136 -79161336 + AluJo SINE Alu 134 298 -14 282 278 45 28 chr11 69622136 69622174 -79161298 + L1ME LINE L1 5824 5869 -252 1873 128 11 0 chr11 69622223 69622541 -79160931 - AluSx SINE Alu 0 321 1 1073 156 0 0 chr11 69622867 69623034 -79160438 - AluSg/x SINE Alu -11 301 135 1989 130 3 0 chr11 69623397 69623682 -79159790 + AluJb SINE Alu 1 286 -26 309 307 70 9 chr11 69623840 69623954 -79159518 + MIR SINE MIR 21 141 -67 211 222 0 37 chr11 69624732 69624786 -79158686 - L2 LINE L2 -1067 2247 2196 370 304 40 27 chr11 69625250 69625398 -79158074 - L2 LINE L2 0 3313 3164 2110 100 23 0 chr11 69626286 69626587 -79156885 + AluSx SINE Alu 1 308 -4 247 256 81 0 chr11 69628636 69628722 -79154750 - L2 LINE L2 -58 3255 3163 394 311 46 20 chr11 69629949 69630145 -79153327 + MIR SINE MIR 48 248 -14 262 319 33 27 chr11 69630277 69630437 -79153035 + MIR3 SINE MIR 1 164 -77 814 172 121 13 chr11 69630484 69630641 -79152831 + FAM SINE Alu 2 175 0 511 231 115 45 chr11 69630700 69630788 -79152684 + L1M4 LINE L1 4349 4429 -1717 2043 116 26 7 chr11 69630788 69631090 -79152382 + AluSg SINE Alu 1 308 -2 511 231 115 45 chr11 69631090 69631244 -79152228 + L1M4 LINE L1 4429 4608 -1538 793 226 6 6 chr11 69631250 69631418 -79152054 - Charlie1a DNA MER1_type -1285 170 3 1958 86 86 7 chr11 69632438 69632728 -79150744 + AluSq SINE Alu 1 313 0 2403 71 3 0 chr11 69633265 69633573 -79149899 + AluSq SINE Alu 1 309 -4 1856 157 16 7 chr11 69633788 69634094 -79149378 + AluJo SINE Alu 1 309 -3 180 0 0 0 chr11 69634176 69634196 -79149276 + (GGGA)n Simple_repeat Simple_repeat 4 23 0 202 356 14 0 chr11 69634483 69634556 -79148916 + L2 LINE L2 3235 3308 -5 799 150 0 8 chr11 69635292 69635419 -79148053 - FLAM_C SINE Alu -16 127 2 2277 74 0 0 chr11 69635707 69636012 -79147460 + AluY SINE Alu 1 305 0 1942 142 0 7 chr11 69636105 69636408 -79147064 - AluSx SINE Alu -11 301 1 840 132 0 8 chr11 69637291 69637420 -79146052 + FLAM_C SINE Alu 5 132 -11 1965 99 60 3 chr11 69637425 69637707 -79145765 - AluSx SINE Alu -14 298 1 2037 129 0 0 chr11 69638168 69638463 -79145009 + AluSx SINE Alu 1 295 -17 427 100 17 0 chr11 69638797 69638857 -79144615 + U7 snRNA snRNA 2 62 -1 1950 108 66 0 chr11 69639797 69640084 -79143388 + AluSx SINE Alu 1 306 -6 340 282 69 8 chr11 69640630 69640807 -79142665 + MIR SINE MIR 24 219 -43 1720 95 4 17 chr11 69641326 69641567 -79141905 + AluSx SINE Alu 1 238 -74 225 0 0 0 chr11 69641587 69641612 -79141860 + (A)n Simple_repeat Simple_repeat 1 25 0 2137 64 13 60 chr11 69642120 69642434 -79141038 + AluY SINE Alu 3 301 -10 2014 127 0 29 chr11 69642538 69642853 -79140619 - AluSx SINE Alu -6 306 1 243 88 0 0 chr11 69642918 69642952 -79140520 + (A)n Simple_repeat Simple_repeat 1 34 0 1999 137 3 0 chr11 69642965 69643264 -79140208 + AluSx SINE Alu 12 311 -1 835 171 0 0 chr11 69643283 69643423 -79140049 + FLAM_C SINE Alu 1 140 -3 183 129 0 0 chr11 69643460 69643491 -79139981 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 1725 92 61 0 chr11 69643664 69643925 -79139547 + AluSq SINE Alu 22 298 -15 332 342 44 9 chr11 69643925 69644039 -79139433 + MER5A DNA MER1_type 44 161 -28 204 40 0 0 chr11 69645099 69645124 -79138348 + (TTTCC)n Simple_repeat Simple_repeat 4 28 0 2069 117 0 7 chr11 69647670 69647960 -79135512 + AluSg SINE Alu 1 288 -22 183 317 100 17 chr11 69648154 69648274 -79135198 - MIR SINE MIR -111 151 22 239 294 125 44 chr11 69649009 69649145 -79134327 + MIR SINE MIR 1 147 -61 602 195 124 0 chr11 69652939 69653052 -79130420 - FLAM_A SINE Alu -6 127 1 1670 59 0 32 chr11 69653090 69653309 -79130163 + AluY SINE Alu 83 294 -17 2004 119 10 3 chr11 69653315 69653609 -79129863 + AluSx SINE Alu 1 296 -16 1668 173 18 0 chr11 69653622 69653906 -79129566 + AluSx SINE Alu 1 289 -23 28 0 0 0 chr11 69653906 69653934 -79129538 + AT_rich Low_complexity Low_complexity 1 28 0 393 237 55 78 chr11 69653934 69654146 -79129326 + L1MC5 LINE L1 5767 7751 -158 2039 118 0 30 chr11 69654334 69654509 -79128963 - AluSq SINE Alu -18 295 131 2369 93 0 0 chr11 69654509 69654821 -79128651 - AluSx SINE Alu 0 312 1 2039 118 0 30 chr11 69654821 69654949 -79128523 - AluSq SINE Alu -182 131 1 282 239 23 23 chr11 69655085 69655173 -79128299 + GA-rich Low_complexity Low_complexity 2 89 0 583 320 74 20 chr11 69655220 69655573 -79127899 - L2 LINE L2 -38 3275 2904 2166 228 145 10 chr11 69656387 69657015 -79126457 + L1MC4 LINE L1 7330 8042 0 2159 121 0 0 chr11 69657665 69657970 -79125502 + AluSx SINE Alu 1 305 -7 1104 84 0 13 chr11 69657970 69658124 -79125348 + AluY SINE Alu 2 153 -158 633 287 143 0 chr11 69658124 69658396 -79125076 + L1ME4a LINE L1 5609 5919 -202 227 287 50 20 chr11 69659485 69659586 -79123886 + MIR SINE MIR 107 210 -52 1527 169 20 46 chr11 69663678 69663755 -79119717 + AluJo SINE Alu 1 79 -233 2134 85 0 4 chr11 69663755 69664036 -79119436 - AluSg SINE Alu -13 297 18 1527 169 20 46 chr11 69664036 69664260 -79119212 + AluJo SINE Alu 79 294 -18 842 202 88 85 chr11 69664268 69664599 -79118873 + L1MC4 LINE L1 7708 8039 -3 2158 126 0 0 chr11 69664601 69664911 -79118561 + AluSx SINE Alu 3 312 0 1221 208 37 75 chr11 69664932 69665167 -79118305 + L1MC5 LINE L1 7223 7466 -495 2069 111 0 33 chr11 69665167 69665473 -79117999 - AluSx SINE Alu -16 296 1 1221 208 37 75 chr11 69665473 69665720 -79117752 + L1MC5 LINE L1 7466 7688 -273 1765 145 10 30 chr11 69665720 69665887 -79117585 - AluSx SINE Alu -15 297 137 2199 96 10 0 chr11 69665887 69666180 -79117292 - AluSg SINE Alu -14 296 1 1765 145 10 30 chr11 69666180 69666315 -79117157 - AluSx SINE Alu -175 137 1 435 132 0 0 chr11 69666340 69666408 -79117064 - U3 snRNA snRNA -149 68 1 1642 174 24 0 chr11 69666457 69666745 -79116727 + AluSg SINE Alu 1 295 -15 1044 169 0 0 chr11 69666746 69666923 -79116549 + AluJb SINE Alu 135 311 -1 260 178 0 0 chr11 69666927 69667021 -79116451 + Alu SINE Alu 241 334 0 294 286 74 46 chr11 69667535 69667710 -79115762 + MIR SINE MIR 47 226 -36 941 166 139 62 chr11 69667853 69667885 -79115587 + L1MC3 LINE L1 7194 7222 -563 2221 95 0 0 chr11 69667885 69668180 -79115292 + AluSx SINE Alu 3 297 -15 941 166 139 62 chr11 69668180 69668406 -79115066 + L1MC3 LINE L1 7222 7472 -313 724 171 0 0 chr11 69668409 69668520 -79114952 + FLAM_A SINE Alu 21 131 -11 2019 122 0 0 chr11 69668541 69668829 -79114643 + AluSx SINE Alu 6 293 -19 2132 126 0 0 chr11 69668834 69669144 -79114328 + AluSx SINE Alu 1 310 -2 591 159 9 0 chr11 69669178 69669285 -79114187 + L1MC3 LINE L1 7461 7568 -217 1824 168 130 50 chr11 69669285 69669610 -79113862 + LTR32 LTR ERVL 15 312 -159 1599 150 3 65 chr11 69669610 69669917 -79113555 + AluJb SINE Alu 1 288 -24 423 0 0 0 chr11 69669921 69669968 -79113504 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 1824 168 130 50 chr11 69669968 69670060 -79113412 + LTR32 LTR ERVL 314 471 0 1010 135 67 0 chr11 69670060 69670268 -79113204 + L1MC3 LINE L1 7564 7785 0 800 169 27 20 chr11 69670280 69670428 -79113044 + AluJo SINE Alu 81 229 -83 545 273 86 71 chr11 69670436 69670467 -79113005 + L1MC4a LINE L1 5255 5284 -837 2195 87 3 0 chr11 69670467 69670755 -79112717 - AluSc SINE Alu -20 289 1 545 273 86 71 chr11 69670755 69671049 -79112423 + L1MC4a LINE L1 5284 5585 -536 1137 134 0 0 chr11 69671062 69671233 -79112239 - AluSg SINE Alu 0 312 142 1065 116 0 0 chr11 69671284 69671431 -79112041 - AluSg SINE Alu -163 147 1 405 236 142 7 chr11 69671435 69671583 -79111889 + L1MC4a LINE L1 5658 5825 -1983 723 213 26 7 chr11 69671656 69671811 -79111661 - MIR SINE MIR -73 189 32 805 159 0 8 chr11 69671819 69671951 -79111521 + FLAM_C SINE Alu 1 131 -12 1718 175 0 7 chr11 69671963 69672266 -79111206 + AluJo SINE Alu 1 301 -11 408 97 0 0 chr11 69672292 69672354 -79111118 + (CA)n Simple_repeat Simple_repeat 1 62 0 246 278 43 17 chr11 69673470 69673585 -79109887 - MER112 DNA MER1_type -135 125 8 1764 125 18 11 chr11 69673787 69674089 -79109383 + AluSx SINE Alu 10 313 0 1528 170 66 81 chr11 69674555 69674714 -79108758 + MLT1B LTR MaLR 1 161 -229 2472 68 0 0 chr11 69674714 69675022 -79108450 + AluSc SINE Alu 1 308 -1 1528 170 66 81 chr11 69675022 69675256 -79108216 + MLT1B LTR MaLR 161 388 -2 527 157 0 0 chr11 69675301 69675384 -79108088 - MER45A DNA AcHobo 0 178 96 1730 144 0 21 chr11 69675384 69675577 -79107895 + AluJo SINE Alu 34 221 -91 3976 107 13 9 chr11 69675577 69675947 -79107525 + MER41A LTR ERV1 1 375 -179 2009 115 3 3 chr11 69675947 69676234 -79107238 + AluSx SINE Alu 16 302 -10 3976 107 13 9 chr11 69676234 69676415 -79107057 + MER41A LTR ERV1 375 554 0 1730 144 0 21 chr11 69676415 69676506 -79106966 + AluJo SINE Alu 221 312 0 327 218 207 0 chr11 69676523 69676610 -79106862 - MER45A DNA AcHobo -72 106 2 1941 117 4 0 chr11 69677730 69678052 -79105420 - AluSq SINE Alu 0 325 3 2234 94 0 0 chr11 69678146 69678444 -79105028 - AluSx SINE Alu -14 298 1 846 185 7 0 chr11 69678581 69678727 -79104745 - FRAM SINE Alu -13 163 17 1933 129 34 3 chr11 69678738 69679032 -79104440 - AluSx SINE Alu -9 303 1 521 281 18 12 chr11 69679032 69679199 -79104273 + MIR SINE MIR 92 259 -3 1749 156 17 0 chr11 69679204 69679492 -79103980 - AluJb SINE Alu -15 297 5 1631 149 8 0 chr11 69679527 69679782 -79103690 - AluSx SINE Alu -55 257 1 594 62 0 0 chr11 69680017 69680098 -79103374 - Alu SINE Alu -5 305 225 368 214 0 54 chr11 69680155 69680267 -79103205 - L2 LINE L2 -303 2969 2864 679 226 8 8 chr11 69681268 69681401 -79102071 + FLAM_A SINE Alu 1 133 0 2172 116 3 0 chr11 69681430 69681732 -79101740 - AluSq SINE Alu -10 303 1 223 341 44 0 chr11 69681843 69681934 -79101538 + L2 LINE L2 2926 3020 -252 353 75 0 0 chr11 69681956 69682009 -79101463 - Alu SINE Alu -2 298 246 356 345 81 54 chr11 69682020 69682278 -79101194 - L1 LINE L1 -2947 3199 2935 2145 114 10 7 chr11 69882764 69883061 -78900411 + AluSp SINE Alu 1 298 -15 1032 96 0 7 chr11 69883100 69883235 -78900237 + AluSc SINE Alu 1 134 -175 2124 113 0 10 chr11 69883235 69883537 -78899935 + AluY SINE Alu 1 299 -12 1369 211 58 0 chr11 69884453 69884728 -78898744 + AluJb SINE Alu 1 291 -21 2373 88 0 0 chr11 69884731 69885039 -78898433 + AluY SINE Alu 1 308 -3 2015 117 13 7 chr11 69885170 69885470 -78898002 - AluSp SINE Alu -11 302 1 2183 93 7 0 chr11 69885474 69885787 -78897685 - AluSg SINE Alu 0 315 1 352 154 11 11 chr11 69888355 69888446 -78895026 + (TG)n Simple_repeat Simple_repeat 2 92 0 2214 117 0 10 chr11 69889898 69890197 -78893275 - AluSx SINE Alu -16 296 1 1160 184 55 9 chr11 69890197 69890414 -78893058 - 7SLRNA srpRNA srpRNA -93 227 1 2153 131 7 3 chr11 69890506 69890812 -78892660 + AluSx SINE Alu 1 307 -5 2259 101 3 3 chr11 69891570 69891867 -78891605 + AluSp SINE Alu 1 297 -16 1819 126 85 0 chr11 69892094 69892365 -78891107 + AluSx SINE Alu 1 294 -18 634 238 7 7 chr11 69892375 69892518 -78890954 + FLAM_C SINE Alu 1 143 0 226 289 174 26 chr11 69892747 69892937 -78890535 + MIR SINE MIR 20 237 -25 222 246 127 3 chr11 69892942 69893094 -78890378 + MIR SINE MIR 4 218 -44 2311 97 0 13 chr11 69893120 69893420 -78890052 - AluSc SINE Alu -13 296 1 1509 207 17 3 chr11 69893982 69894281 -78889191 + AluJo SINE Alu 1 303 -9 2388 92 0 19 chr11 69894286 69894601 -78888871 + AluSx SINE Alu 1 309 -3 1420 189 69 51 chr11 69894947 69895322 -78888150 - Charlie1 DNA MER1_type -2378 383 2 279 246 171 48 chr11 69895353 69895540 -78887932 - MER112 DNA MER1_type -50 210 1 652 234 8 0 chr11 69895787 69895911 -78887561 - FLAM_C SINE Alu -17 126 2 656 197 16 0 chr11 69896038 69896165 -78887307 - FLAM_A SINE Alu -4 129 1 2234 119 7 0 chr11 69896198 69896501 -78886971 - AluSq SINE Alu -8 305 1 709 169 61 14 chr11 69896960 69897108 -78886364 - L1MB3 LINE L1 -10 6173 6019 246 250 111 0 chr11 69897228 69897300 -78886172 + L2 LINE L2 3157 3236 -36 550 239 66 33 chr11 69897328 69897541 -78885931 + L1MC4 LINE L1 7275 7494 -548 4329 160 87 45 chr11 69897673 69898203 -78885269 + L1MC2 LINE L1 4855 5361 -983 622 180 62 31 chr11 69898203 69898331 -78885141 + FLAM_C SINE Alu 1 132 -1 4329 160 87 45 chr11 69898331 69899052 -78884420 + L1MC2 LINE L1 5361 6050 -294 480 200 139 0 chr11 69899052 69899167 -78884305 - FLAM_A SINE Alu -2 131 1 4329 160 87 45 chr11 69899167 69899227 -78884245 + L1MC2 LINE L1 6050 6106 -238 2301 93 0 3 chr11 69899227 69899528 -78883944 - AluSx SINE Alu -12 300 1 4329 160 87 45 chr11 69899528 69899550 -78883922 + L1MC2 LINE L1 6106 6234 -110 2508 52 0 16 chr11 69899652 69899959 -78883513 - AluY SINE Alu -9 302 1 373 253 0 0 chr11 69899961 69900036 -78883436 - MER58B DNA MER1_type -6 335 261 1104 106 12 25 chr11 69900091 69900251 -78883221 - AluSc SINE Alu -20 289 132 2563 56 0 13 chr11 69900251 69900557 -78882915 - AluY SINE Alu -9 302 1 1204 163 96 67 chr11 69900559 69900841 -78882631 - AluJo SINE Alu -22 290 1 1899 138 3 3 chr11 69900879 69901228 -78882244 + AluSx SINE Alu 1 349 0 6643 135 32 63 chr11 69901228 69901851 -78881621 - L1M4c LINE L1 -3788 2594 1953 713 204 0 0 chr11 69901851 69901964 -78881508 - FLAM_A SINE Alu -17 116 4 6643 135 32 63 chr11 69901964 69902766 -78880706 - L1M4c LINE L1 -4429 1953 1215 1114 189 56 60 chr11 69902766 69903105 -78880367 - MSTD LTR MaLR -2 394 24 1933 123 17 33 chr11 69903105 69903406 -78880066 - AluSq SINE Alu -16 297 2 1114 189 56 60 chr11 69903406 69903430 -78880042 - MSTD LTR MaLR -372 24 1 3592 122 109 13 chr11 69903431 69904103 -78879369 - L1M4c LINE L1 -5168 1216 481 2327 70 7 0 chr11 69904124 69904409 -78879063 - AluSg SINE Alu -23 287 1 1085 103 0 0 chr11 69904409 69904545 -78878927 - AluSq/x SINE Alu -176 136 1 2529 74 0 3 chr11 69904690 69905002 -78878470 - AluY SINE Alu 0 311 1 691 249 109 14 chr11 69905171 69905392 -78878080 + MIR SINE MIR 3 244 -18 555 131 0 0 chr11 69906019 69906103 -78877369 - AluJ/FLAM SINE Alu -226 86 3 621 247 0 13 chr11 69906104 69906254 -78877218 - L1M4 LINE L1 -1271 5111 4964 1158 188 85 0 chr11 69906282 69906505 -78876967 - AluJb SINE Alu -16 296 55 1909 210 119 42 chr11 69906515 69906904 -78876568 - L1M4 LINE L1 -1443 4939 4483 270 0 0 0 chr11 69906904 69906934 -78876538 + (TG)n Simple_repeat Simple_repeat 1 30 0 1909 210 119 42 chr11 69906934 69907168 -78876304 - L1M4 LINE L1 -1899 4483 4268 1181 178 155 11 chr11 69907269 69907396 -78876076 - AluJb SINE Alu 0 302 195 207 0 0 0 chr11 69907396 69907419 -78876053 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2084 109 18 0 chr11 69907419 69907704 -78875768 - AluSp SINE Alu -23 290 1 1181 178 155 11 chr11 69907704 69907839 -78875633 - AluJb SINE Alu -106 196 1 555 211 39 23 chr11 69907841 69907969 -78875503 - FLAM_C SINE Alu -3 130 1 2398 167 5 47 chr11 69908078 69908135 -78875337 - L1M4 LINE L1 -5938 446 388 1929 146 38 0 chr11 69908135 69908422 -78875050 - AluJo SINE Alu -14 298 1 2398 167 5 47 chr11 69908422 69908812 -78874660 - L1M4 LINE L1 -5996 388 18 242 264 0 28 chr11 69908813 69908885 -78874587 - MER5A DNA MER1_type -113 76 7 351 157 72 12 chr11 69909032 69909115 -78874357 - L2 LINE L2 -1 3271 3184 2304 103 0 0 chr11 69909416 69909717 -78873755 + AluSx SINE Alu 1 301 -11 2023 123 23 3 chr11 69910975 69911276 -78872196 + AluJb SINE Alu 1 307 -5 4096 158 43 40 chr11 69912538 69913415 -78870057 - L1MB7 LINE L1 -6 6178 5299 1047 157 97 147 chr11 69913416 69913716 -78869756 - AluJb SINE Alu -22 290 6 7029 200 45 75 chr11 69913766 69914433 -78869039 - L1MB7 LINE L1 -1106 5040 4355 1892 104 107 4 chr11 69914433 69914713 -78868759 - AluSg SINE Alu -1 309 1 7029 200 45 75 chr11 69914713 69915039 -78868433 - L1MB7 LINE L1 -1791 4355 4021 2418 76 0 0 chr11 69915039 69915329 -78868143 + AluY SINE Alu 1 290 -21 7029 200 45 75 chr11 69915329 69915346 -78868126 - L1MB7 LINE L1 -2125 4021 4005 1985 141 0 46 chr11 69915346 69915673 -78867799 + AluSx SINE Alu 1 312 0 7029 200 45 75 chr11 69915673 69916242 -78867230 - L1MB7 LINE L1 -2141 4005 3421 303 28 0 0 chr11 69916242 69916278 -78867194 + (TG)n Simple_repeat Simple_repeat 2 37 0 7029 200 45 75 chr11 69916278 69916511 -78866961 - L1MB7 LINE L1 -2725 3421 3183 1736 167 29 0 chr11 69916511 69916825 -78866647 - AluJo SINE Alu 0 322 1 7029 200 45 75 chr11 69916825 69917120 -78866352 - L1MB7 LINE L1 -2963 3183 2990 1778 129 57 7 chr11 69917120 69917400 -78866072 - AluSx SINE Alu -18 294 1 7029 200 45 75 chr11 69917400 69917424 -78866048 - L1MB7 LINE L1 -3156 2990 2967 2440 71 0 16 chr11 69917424 69917735 -78865737 - AluY SINE Alu -5 306 1 1284 214 58 4 chr11 69917738 69918014 -78865458 - AluJb SINE Alu -21 291 1 987 173 0 0 chr11 69918930 69919092 -78864380 - AluSp SINE Alu -12 301 140 189 0 0 0 chr11 69919101 69919122 -78864350 + (A)n Simple_repeat Simple_repeat 1 21 0 857 183 0 0 chr11 69919140 69919282 -78864190 - FLAM_C SINE Alu -1 142 1 2246 102 17 0 chr11 69919634 69919927 -78863545 + AluSq SINE Alu 1 298 -15 1934 134 13 10 chr11 69920530 69920693 -78862779 - AluSq SINE Alu -13 300 134 1832 111 111 7 chr11 69920693 69920963 -78862509 - AluSg SINE Alu -12 298 1 1934 134 13 10 chr11 69920963 69921098 -78862374 - AluSq SINE Alu -179 134 1 2231 101 0 49 chr11 69921325 69921652 -78861820 + AluSx SINE Alu 1 311 -1 1193 84 0 0 chr11 69921692 69921847 -78861625 + L1PA6 LINE L1 5998 6152 -2 1236 186 19 0 chr11 69923168 69923383 -78860089 + AluJb SINE Alu 87 305 -7 1595 211 6 13 chr11 69923675 69923988 -78859484 - AluJb SINE Alu -1 311 1 714 201 0 8 chr11 69923996 69924130 -78859342 - FLAM_A SINE Alu 0 133 1 2494 74 0 0 chr11 69924143 69924439 -78859033 - AluY SINE Alu -15 296 1 2403 77 0 3 chr11 69924447 69924745 -78858727 - AluSg SINE Alu -13 297 1 466 296 74 0 chr11 69925074 69925236 -78858236 + MIR SINE MIR 64 237 -25 1629 183 53 0 chr11 69925312 69925596 -78857876 + AluJo SINE Alu 1 299 -13 1849 148 26 7 chr11 69925619 69925924 -78857548 - AluJb SINE Alu -1 311 1 1894 117 0 4 chr11 69926501 69926765 -78856707 + AluSx SINE Alu 39 301 -11 408 200 200 27 chr11 69927378 69927488 -78855984 - FLAM_A SINE Alu -13 129 1 3090 108 11 86 chr11 69927499 69927596 -78855876 - MER75 DNA T2_type 0 514 411 2558 54 0 0 chr11 69927596 69927893 -78855579 - AluY SINE Alu -14 297 1 3090 108 11 86 chr11 69927893 69928067 -78855405 - MER75 DNA T2_type -103 411 225 2024 108 0 76 chr11 69928067 69928238 -78855234 - AluSx SINE Alu -20 292 110 180 0 0 0 chr11 69928238 69928258 -78855214 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2269 94 7 0 chr11 69928264 69928551 -78854921 - AluSq SINE Alu -24 289 1 2069 126 7 0 chr11 69928552 69928845 -78854627 - AluSp SINE Alu -18 295 1 2024 108 0 76 chr11 69928845 69928980 -78854492 - AluSx SINE Alu -206 106 1 3090 108 11 86 chr11 69928980 69929207 -78854265 - MER75 DNA T2_type -289 225 59 2145 108 47 3 chr11 69929207 69929504 -78853968 + AluSx SINE Alu 2 311 -1 3090 108 11 86 chr11 69929504 69929559 -78853913 - MER75 DNA T2_type -455 59 1 1148 191 33 42 chr11 69929680 69929921 -78853551 - AluJo SINE Alu -68 244 6 1988 125 0 0 chr11 69929921 69930185 -78853287 + AluSx SINE Alu 35 298 -14 849 171 25 44 chr11 69931194 69931352 -78852120 + AluJb SINE Alu 137 291 -21 325 295 81 13 chr11 69931675 69931824 -78851648 + MARNA DNA Mariner 33 191 -395 4437 137 72 54 chr11 69932440 69932887 -78850585 - Tigger3b DNA MER2_type -1800 1228 791 2110 77 14 40 chr11 69932887 69933184 -78850288 + AluSx SINE Alu 1 289 -23 4437 137 72 54 chr11 69933184 69933933 -78849539 - Tigger3b DNA MER2_type -2237 791 1 4030 174 15 34 chr11 69933965 69934035 -78849437 - L1MB7 LINE L1 0 6184 6114 1669 181 10 7 chr11 69934035 69934338 -78849134 + AluJb SINE Alu 1 304 -8 4030 174 15 34 chr11 69934338 69935138 -78848334 - L1MB7 LINE L1 -70 6114 5331 2254 82 3 24 chr11 69935170 69935491 -78847981 - AluSp SINE Alu 0 315 1 2195 82 45 7 chr11 69936561 69936852 -78846620 - AluY SINE Alu -9 302 1 1486 105 0 5 chr11 69936852 69937042 -78846430 - AluSx SINE Alu -123 189 1 533 188 120 8 chr11 69937047 69937180 -78846292 + L1MC3 LINE L1 7637 7784 -1 2199 109 0 7 chr11 69937183 69937477 -78845995 + AluSc SINE Alu 1 292 -17 2290 102 7 3 chr11 69937845 69938149 -78845323 + AluSq SINE Alu 1 305 -8 999 84 56 0 chr11 69938174 69938317 -78845155 - L1PA8 LINE L1 0 6172 6022 2210 106 7 0 chr11 69938317 69938610 -78844862 + AluSx SINE Alu 1 295 -17 2232 122 0 0 chr11 69938922 69939217 -78844255 + AluSq SINE Alu 1 295 -18 261 0 0 0 chr11 69939217 69939246 -78844226 + (CAAAT)n Simple_repeat Simple_repeat 2 30 0 1636 169 20 46 chr11 69939359 69939436 -78844036 + AluJo SINE Alu 1 79 -233 2233 89 0 4 chr11 69939436 69939717 -78843755 - AluSg SINE Alu -13 297 18 1636 169 20 46 chr11 69939717 69939941 -78843531 + AluJo SINE Alu 79 294 -18 837 199 88 85 chr11 69939949 69940280 -78843192 + L1MC4 LINE L1 7708 8039 -3 2278 123 0 0 chr11 69940282 69940590 -78842882 + AluSx SINE Alu 3 310 -2 1200 213 38 77 chr11 69940613 69940848 -78842624 + L1MC5 LINE L1 7223 7431 -530 2188 111 0 33 chr11 69940848 69941154 -78842318 - AluSx SINE Alu -16 296 1 1200 213 38 77 chr11 69941154 69941396 -78842076 + L1MC5 LINE L1 7431 7681 -280 1248 167 9 19 chr11 69941400 69941615 -78841857 - AluSg/x SINE Alu -15 295 83 718 96 0 0 chr11 69941615 69941709 -78841763 - AluSc SINE Alu -61 248 155 1337 143 20 99 chr11 69941837 69942130 -78841342 + AluJb SINE Alu 42 311 -1 246 178 0 0 chr11 69942134 69942228 -78841244 + Alu SINE Alu 241 334 0 304 289 70 48 chr11 69942730 69942917 -78840555 + MIR SINE MIR 36 226 -36 913 166 139 62 chr11 69943060 69943092 -78840380 + L1MC3 LINE L1 7194 7222 -563 2343 95 0 0 chr11 69943092 69943387 -78840085 + AluSx SINE Alu 3 297 -15 913 166 139 62 chr11 69943387 69943613 -78839859 + L1MC3 LINE L1 7222 7472 -313 725 171 0 0 chr11 69943616 69943727 -78839745 + FLAM_A SINE Alu 21 131 -11 2100 114 3 3 chr11 69943748 69944037 -78839435 + AluSx SINE Alu 6 294 -18 2346 118 0 0 chr11 69944041 69944354 -78839118 + AluSq SINE Alu 1 313 0 475 235 128 37 chr11 69944745 69944932 -78838540 + MIR SINE MIR 59 262 0 337 206 118 123 chr11 69944990 69945218 -78838254 - L1ME4a LINE L1 -4 6117 5891 2063 110 10 10 chr11 69945245 69945544 -78837928 - AluSx SINE Alu -13 299 1 463 155 60 0 chr11 69946255 69946339 -78837133 + AluJo SINE Alu 48 136 -176 537 176 44 132 chr11 69946765 69946885 -78836587 + MER33 DNA MER1_type 2 98 -2487 1570 132 111 31 chr11 69946885 69947174 -78836298 - AluSx SINE Alu 0 312 1 537 176 44 132 chr11 69947174 69947257 -78836215 + MER33 DNA MER1_type 98 187 -137 1059 212 18 9 chr11 69947257 69947479 -78835993 - AluJo SINE Alu -1 311 88 412 176 99 14 chr11 69947491 69947554 -78835918 + MER33 DNA MER1_type 161 217 -2368 1895 160 7 0 chr11 69947554 69947842 -78835630 + AluSx SINE Alu 2 291 -21 412 176 99 14 chr11 69947842 69947854 -78835618 + MER33 DNA MER1_type 217 227 -2358 1608 176 49 18 chr11 69947854 69948138 -78835334 + AluJo SINE Alu 1 293 -19 412 176 99 14 chr11 69948138 69948203 -78835269 + MER33 DNA MER1_type 227 314 -10 324 0 0 0 chr11 69948422 69948458 -78835014 + (TG)n Simple_repeat Simple_repeat 2 37 0 2006 133 3 10 chr11 69948494 69948788 -78834684 - AluSq SINE Alu -21 292 1 243 130 56 0 chr11 69949008 69949062 -78834410 - L1MC4 LINE L1 0 8042 7986 1321 179 124 7 chr11 69949073 69949347 -78834125 + AluJo SINE Alu 6 311 -1 366 287 0 0 chr11 69949686 69949773 -78833699 + MER58 DNA MER1_type 9 95 -2325 553 127 0 64 chr11 69949782 69949892 -78833580 - L1MB5 LINE L1 -2 6172 6070 1657 118 33 46 chr11 69949893 69949928 -78833544 - L1MB5 LINE L1 -209 5965 5931 2008 125 3 24 chr11 69949928 69950243 -78833229 - AluSq SINE Alu 0 309 1 1657 118 33 46 chr11 69950243 69950509 -78832963 - L1MB5 LINE L1 -243 5931 5666 1640 156 92 3 chr11 69950509 69950792 -78832680 - AluSx SINE Alu 0 312 5 1421 206 17 21 chr11 69950811 69951102 -78832370 - AluJo SINE Alu -16 296 7 2118 138 3 3 chr11 69951110 69951421 -78832051 - AluSp SINE Alu -2 311 1 1233 163 96 67 chr11 69951459 69951741 -78831731 + AluJo SINE Alu 1 290 -22 2586 61 0 13 chr11 69951743 69952055 -78831417 + AluY SINE Alu 1 308 -3 1753 181 7 10 chr11 69952056 69952355 -78831117 + AluJb SINE Alu 1 298 -14 2063 130 3 22 chr11 69952457 69952773 -78830699 - AluSg SINE Alu 0 310 1 586 231 25 0 chr11 69952781 69952902 -78830570 - FLAM_A SINE Alu -9 124 1 7803 124 55 77 chr11 69952909 69953057 -78830415 - Tigger1 DNA MER2_type -834 1584 1434 2387 61 3 7 chr11 69953057 69953350 -78830122 - AluY SINE Alu -19 292 1 7803 124 55 77 chr11 69953350 69953455 -78830017 - Tigger1 DNA MER2_type -984 1434 1328 1671 191 21 3 chr11 69953455 69953738 -78829734 + AluJb SINE Alu 1 288 -24 2439 74 0 7 chr11 69953745 69954044 -78829428 + AluY SINE Alu 1 297 -14 7803 124 55 77 chr11 69954044 69955182 -78828290 - Tigger1 DNA MER2_type -1096 1322 161 2106 129 0 4 chr11 69955182 69955462 -78828010 + AluSx SINE Alu 2 280 -32 342 0 0 0 chr11 69955463 69955501 -78827971 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 7803 124 55 77 chr11 69955501 69955536 -78827936 - Tigger1 DNA MER2_type -2257 161 127 2339 60 43 0 chr11 69955536 69955818 -78827654 - AluYa5 SINE Alu -16 295 2 7803 124 55 77 chr11 69955818 69955977 -78827495 - Tigger1 DNA MER2_type -2291 127 21 381 200 73 36 chr11 69956029 69956061 -78827411 - MIR SINE MIR 0 262 233 1863 174 97 17 chr11 69956061 69956463 -78827009 + Tigger2a DNA MER2_type 1 434 0 381 200 73 36 chr11 69956463 69956578 -78826894 - MIR SINE MIR -29 233 15 1657 176 3 17 chr11 69956782 69957084 -78826388 + AluJb SINE Alu 1 298 -14 1999 183 52 5 chr11 69957368 69957815 -78825657 - L1MB3 LINE L1 -7 6176 5709 704 231 0 0 chr11 69957821 69957942 -78825530 + FLAM_A SINE Alu 1 121 -12 349 259 49 74 chr11 69958726 69958888 -78824584 - L1ME4a LINE L1 0 6121 5964 759 260 138 28 chr11 69959079 69959441 -78824031 - LTR33 LTR ERVL -115 406 5 750 240 125 0 chr11 69959591 69959791 -78823681 + MIR SINE MIR 2 226 -36 341 268 52 10 chr11 69960004 69960101 -78823371 - MIR SINE MIR -65 143 43 305 194 311 10 chr11 69963024 69963127 -78820345 + MIR SINE MIR 21 154 -108 183 398 8 0 chr11 69963907 69964025 -78819447 - L3 LINE CR1 -112 1465 1347 193 294 120 11 chr11 69964393 69964485 -78818987 - MIR SINE MIR 0 262 161 1830 104 4 0 chr11 69964585 69964826 -78818646 + AluSx SINE Alu 61 302 -10 2018 140 20 0 chr11 69964838 69965130 -78818342 + AluSx SINE Alu 1 298 -14 236 331 69 29 chr11 69965195 69965370 -78818102 - L2 LINE L2 -342 2972 2791 2113 108 0 3 chr11 69965381 69965676 -78817796 - AluY SINE Alu -17 294 1 2423 75 7 3 chr11 69965684 69966013 -78817459 - AluSx SINE Alu 0 312 1 203 328 31 0 chr11 69966134 69966198 -78817274 + MIR SINE MIR 94 159 -103 244 336 82 8 chr11 69966202 69966324 -78817148 + L1MC/D LINE L1 5618 5748 -2060 658 188 21 49 chr11 69967071 69967215 -78816257 - MIR SINE MIR -15 247 108 366 331 80 0 chr11 69967366 69967517 -78815955 - MIR SINE MIR -40 222 60 221 243 9 32 chr11 69967655 69967762 -78815710 + MIR3 SINE MIR 8 148 -60 555 124 0 82 chr11 69967936 69968033 -78815439 - AluSg/x SINE Alu -14 295 207 208 209 15 60 chr11 69968260 69968327 -78815145 + MIR SINE MIR 42 105 -103 321 122 0 0 chr11 69968709 69968758 -78814714 - MER53 DNA DNA 0 189 141 1863 128 3 21 chr11 69968779 69969068 -78814404 - AluSg SINE Alu -26 284 1 445 132 0 0 chr11 69969120 69969188 -78814284 + U3 snRNA snRNA 1 68 -149 883 156 7 0 chr11 69969213 69969348 -78814124 + AluSq/x SINE Alu 1 136 -176 2344 95 10 0 chr11 69969348 69969643 -78813829 + AluSg SINE Alu 1 298 -12 405 306 98 12 chr11 69969861 69970151 -78813321 - L2 LINE L2 -252 3061 2747 1318 223 87 54 chr11 69970182 69970471 -78813001 - L1ME3A LINE L1 -16 6154 5841 2124 84 18 4 chr11 69970471 69970744 -78812728 - AluSx SINE Alu -22 290 14 1318 223 87 54 chr11 69970744 69970938 -78812534 - L1ME3A LINE L1 -329 5841 5655 1635 111 172 4 chr11 69971047 69971309 -78812163 - AluSx SINE Alu -6 306 1 225 0 0 0 chr11 69971761 69971786 -78811686 + (T)n Simple_repeat Simple_repeat 1 25 0 2162 130 0 0 chr11 69972166 69972459 -78811013 - AluSq SINE Alu -18 295 3 2173 99 10 7 chr11 69972468 69972785 -78810687 - AluSx SINE Alu 0 312 1 2246 102 0 0 chr11 69973028 69973340 -78810132 + AluSg SINE Alu 1 312 0 2155 97 14 0 chr11 69973343 69973633 -78809839 + AluSx SINE Alu 1 294 -18 2358 75 3 14 chr11 69973650 69973943 -78809529 + AluSp SINE Alu 1 290 -23 235 269 0 15 chr11 69974810 69974877 -78808595 - LTR33 LTR ERVL -11 510 445 2515 72 3 0 chr11 69974879 69975186 -78808286 + AluY SINE Alu 1 308 -3 1729 160 42 28 chr11 69975195 69975317 -78808155 + AluJb SINE Alu 3 122 -190 210 37 0 0 chr11 69975317 69975344 -78808128 + (TAAAA)n Simple_repeat Simple_repeat 3 29 0 1729 160 42 28 chr11 69975344 69975509 -78807963 + AluJb SINE Alu 122 294 -18 475 127 28 0 chr11 69975513 69975584 -78807888 + AluS SINE Alu 2 74 -238 235 280 28 19 chr11 69976638 69976745 -78806727 - MER112 DNA MER1_type -145 115 8 1874 125 18 11 chr11 69976947 69977249 -78806223 + AluSx SINE Alu 10 313 0 1396 177 60 91 chr11 69977728 69977874 -78805598 + MLT1B LTR MaLR 16 165 -225 2622 59 0 0 chr11 69977874 69978178 -78805294 + AluSc SINE Alu 1 304 -5 1396 177 60 91 chr11 69978178 69978416 -78805056 + MLT1B LTR MaLR 165 388 -2 521 157 0 0 chr11 69978461 69978544 -78804928 - MER45A DNA AcHobo 0 178 96 1358 150 0 0 chr11 69978544 69978737 -78804735 + AluJo SINE Alu 34 226 -86 2622 100 0 0 chr11 69978737 69979106 -78804366 + MER41A LTR ERV1 1 369 -185 1999 122 7 7 chr11 69979107 69979393 -78804079 + AluSx SINE Alu 16 301 -11 1138 148 0 0 chr11 69979506 69979668 -78803804 + AluSq SINE Alu 134 295 -18 2375 92 0 3 chr11 69979675 69979970 -78803502 + AluSq SINE Alu 1 294 -19 389 113 0 16 chr11 69979987 69980049 -78803423 + MER66B LTR ERV1 288 348 -138 915 233 0 5 chr11 69980057 69980237 -78803235 + AluJb SINE Alu 120 300 -12 2379 77 6 6 chr11 69980237 69980548 -78802924 + AluY SINE Alu 1 311 0 915 233 0 5 chr11 69980548 69980560 -78802912 + AluJb SINE Alu 300 311 -1 285 143 0 0 chr11 69980581 69980630 -78802842 + MER66A LTR ERV1 287 335 -143 252 0 0 0 chr11 69980636 69980664 -78802808 + (A)n Simple_repeat Simple_repeat 1 28 0 2118 121 27 3 chr11 69980683 69980981 -78802491 + AluSq SINE Alu 1 305 -8 321 238 163 0 chr11 69981416 69981496 -78801976 - L2 LINE L2 -7 3265 3173 1090 161 60 0 chr11 69981499 69981698 -78801774 - MER46A DNA MER2_type -25 211 1 772 148 140 89 chr11 69981705 69981953 -78801519 + L1MB8 LINE L1 5929 6180 0 486 289 28 0 chr11 69982283 69982425 -78801047 - MIR SINE MIR -104 158 13 223 266 35 91 chr11 69982515 69982658 -78800814 - L2 LINE L2 -17 3296 3162 234 221 286 26 chr11 69983018 69983095 -78800377 + MIR SINE MIR 57 153 -109 196 273 15 61 chr11 69983101 69983167 -78800305 - MIR SINE MIR -6 256 194 316 284 37 16 chr11 69983583 69983746 -78799726 + MIR SINE MIR 4 170 -58 402 271 37 0 chr11 69983786 69983893 -78799579 + MIR3 SINE MIR 12 122 -86 431 152 0 0 chr11 69983915 69983994 -78799478 + AluS SINE Alu 230 308 -2 2355 86 3 3 chr11 69984167 69984480 -78798992 - AluSp SINE Alu 0 313 1 776 177 0 0 chr11 69984563 69984687 -78798785 - FLAM_A SINE Alu -9 124 1 391 261 17 25 chr11 69984898 69985017 -78798455 - MIR SINE MIR -123 139 22 2287 106 3 0 chr11 69985126 69985437 -78798035 + AluSx SINE Alu 1 312 0 222 37 0 0 chr11 69985569 69985596 -78797876 + (A)n Simple_repeat Simple_repeat 1 27 0 798 248 143 9 chr11 69986105 69986335 -78797137 + MIR SINE MIR 2 262 0 375 297 95 26 chr11 69986733 69986965 -78796507 + Charlie8 DNA MER1_type 2 249 -2168 422 237 38 23 chr11 69987501 69987632 -78795840 + MER53 DNA DNA 1 133 -56 899 304 17 0 chr11 69987639 69987914 -78795558 + AluSq SINE Alu 1 283 -20 303 28 0 0 chr11 69987914 69987950 -78795522 + (CA)n Simple_repeat Simple_repeat 1 36 0 899 304 17 0 chr11 69987950 69987970 -78795502 + AluSq SINE Alu 283 301 -2 2009 144 0 25 chr11 69988082 69988401 -78795071 + AluSx SINE Alu 1 311 -1 282 273 45 28 chr11 69988669 69988707 -78794765 - L1ME LINE L1 -252 5869 5833 1319 209 38 17 chr11 69988707 69988858 -78794614 - AluJo SINE Alu -14 298 152 2107 113 10 3 chr11 69988858 69989160 -78794312 - AluSx SINE Alu -3 309 6 1319 209 38 17 chr11 69989160 69989178 -78794294 - AluJo SINE Alu -160 152 136 351 0 0 0 chr11 69989178 69989217 -78794255 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1319 209 38 17 chr11 69989217 69989338 -78794134 - AluJo SINE Alu -176 136 1 282 273 45 28 chr11 69989338 69989475 -78793997 - L1ME LINE L1 -288 5833 5691 1179 115 93 49 chr11 69989513 69989664 -78793808 - AluSg/x SINE Alu -12 300 157 231 36 0 0 chr11 69989664 69989692 -78793780 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2080 109 3 3 chr11 69989692 69989975 -78793497 - AluSp SINE Alu -30 283 1 1179 115 93 49 chr11 69989975 69990048 -78793424 - AluSg/x SINE Alu -154 158 65 1375 167 31 22 chr11 69990180 69990504 -78792968 - L1MA4A LINE L1 -178 6125 5799 201 39 0 0 chr11 69990504 69990530 -78792942 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 1783 130 56 0 chr11 69990530 69990800 -78792672 - AluSx SINE Alu -27 285 1 412 324 55 35 chr11 69990887 69991088 -78792384 - L1ME3A LINE L1 0 6164 5964 1930 157 3 0 chr11 69991090 69991425 -78792047 - AluSx SINE Alu 0 312 1 1776 129 24 14 chr11 69991438 69991732 -78791740 - AluSx SINE Alu -15 297 1 22 0 0 0 chr11 69991739 69991761 -78791711 + AT_rich Low_complexity Low_complexity 1 22 0 324 0 0 0 chr11 69992105 69992141 -78791331 + (TG)n Simple_repeat Simple_repeat 2 37 0 372 103 0 0 chr11 69992348 69992406 -78791066 + (TG)n Simple_repeat Simple_repeat 1 58 0 1709 176 3 7 chr11 69992432 69992734 -78790738 - AluJo SINE Alu -11 301 1 823 159 0 8 chr11 69992746 69992878 -78790594 - FLAM_C SINE Alu -12 131 1 707 213 26 7 chr11 69992886 69993041 -78790431 + MIR SINE MIR 32 189 -73 366 236 142 7 chr11 69993114 69993262 -78790210 - L1MC4a LINE L1 -1983 5825 5658 1082 116 0 0 chr11 69993266 69993413 -78790059 + AluSg SINE Alu 1 147 -163 1150 134 0 0 chr11 69993464 69993635 -78789837 + AluSg SINE Alu 140 310 0 1113 142 11 0 chr11 69993788 69993971 -78789501 - AluSq SINE Alu -8 305 121 1082 96 0 14 chr11 69994128 69994274 -78789198 - AluSq SINE Alu -168 144 1 658 324 0 57 chr11 69994566 69994832 -78788640 - MIR SINE MIR 0 262 14 2126 116 3 3 chr11 69994871 69995172 -78788300 + AluSx SINE Alu 1 301 -11 1682 126 11 7 chr11 69995660 69995929 -78787543 - AluJb SINE Alu -12 300 31 2192 125 38 52 chr11 69995929 69996086 -78787386 + THE1B LTR MaLR 1 159 -205 2335 84 3 0 chr11 69996086 69996382 -78787090 - AluSp SINE Alu -15 298 2 2192 125 38 52 chr11 69996382 69996593 -78786879 + THE1B LTR MaLR 159 364 0 2369 78 0 3 chr11 69996726 69997035 -78786437 - AluY SINE Alu -3 308 1 2253 85 3 13 chr11 69997559 69997866 -78785606 - AluSg SINE Alu -6 304 1 356 181 36 12 chr11 69997866 69997949 -78785523 + MIR SINE MIR 70 154 -108 2300 104 0 0 chr11 69997957 69998256 -78785216 + AluSx SINE Alu 1 299 -13 2256 105 0 3 chr11 69998264 69998570 -78784902 + AluSx SINE Alu 5 309 -3 475 185 87 0 chr11 69998570 69998662 -78784810 + AluJo/FRAM SINE Alu 182 281 -31 834 80 24 24 chr11 69998763 69998888 -78784584 - AluSq/x SINE Alu -188 125 1 213 39 0 0 chr11 69998890 69998916 -78784556 + (T)n Simple_repeat Simple_repeat 1 26 0 1930 92 73 4 chr11 69998991 69999264 -78784208 - AluSg SINE Alu -18 292 1 514 251 128 44 chr11 69999271 69999474 -78783998 - MIR SINE MIR -10 252 33 2525 45 0 13 chr11 69999544 69999858 -78783614 + AluY SINE Alu 1 310 -1 2019 85 44 4 chr11 70000225 70000537 -78782935 - AluY SINE Alu 0 323 1 1376 106 5 5 chr11 70000537 70000726 -78782746 - AluSx SINE Alu -123 189 1 367 248 95 22 chr11 70000731 70000868 -78782604 + L1MC3 LINE L1 7637 7783 -2 2032 109 3 10 chr11 70000871 70001165 -78782307 + AluSc SINE Alu 1 292 -17 2211 82 21 0 chr11 70001532 70001823 -78781649 + AluSx SINE Alu 1 297 -15 383 298 18 47 chr11 70002428 70002599 -78780873 - MIR3 SINE MIR -39 169 4 280 219 154 134 chr11 70002615 70002816 -78780656 + MIR SINE MIR 46 250 -12 243 0 0 0 chr11 70003369 70003396 -78780076 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 205 363 82 25 chr11 70003648 70003929 -78779543 - L2 LINE L2 -56 3216 2920 583 224 55 7 chr11 70004826 70004992 -78778480 - MIR SINE MIR -62 146 4 263 304 160 0 chr11 70005051 70005176 -78778296 - MIR3 SINE MIR -60 148 4 221 288 0 0 chr11 70005600 70005659 -78777813 + GA-rich Low_complexity Low_complexity 3 61 0 2051 100 31 3 chr11 70006104 70006394 -78777078 - AluSq SINE Alu -12 301 4 768 234 129 0 chr11 70006479 70006680 -78776792 - MIR SINE MIR -12 250 24 446 246 95 0 chr11 70006681 70006807 -78776665 - MIR3 SINE MIR -4 204 67 682 247 12 12 chr11 70008129 70008291 -78775181 + MIR SINE MIR 13 174 -88 318 267 63 48 chr11 70008364 70008570 -78774902 + L2 LINE L2 2852 3060 -212 2093 116 0 23 chr11 70008647 70008949 -78774523 - AluSx SINE Alu -16 296 2 627 246 62 44 chr11 70009742 70010014 -78773458 + LTR16A1 LTR ERVL 179 455 -2 297 253 42 21 chr11 70011477 70011572 -78771900 - MIR SINE MIR -95 113 17 1171 98 12 0 chr11 70011641 70011804 -78771668 - AluSg/x SINE Alu -14 298 134 2235 88 0 23 chr11 70011804 70012109 -78771363 - AluSx SINE Alu -14 298 1 1580 173 11 0 chr11 70012156 70012427 -78771045 + AluJo SINE Alu 39 312 0 2392 67 0 13 chr11 70012438 70012750 -78770722 + AluY SINE Alu 1 308 -3 189 0 0 0 chr11 70012960 70012981 -78770491 + (A)n Simple_repeat Simple_repeat 1 21 0 2419 74 0 10 chr11 70013081 70013391 -78770081 - AluY SINE Alu -4 307 1 239 125 36 36 chr11 70013396 70013452 -78770020 - AluJo SINE Alu -161 141 86 2303 95 0 22 chr11 70013477 70013794 -78769678 + AluSg SINE Alu 1 310 0 196 246 43 14 chr11 70013805 70013874 -78769598 - MIR SINE MIR -114 94 24 224 267 55 0 chr11 70014074 70014172 -78769300 - MIR SINE MIR -65 143 37 956 172 0 6 chr11 70014797 70014960 -78768512 - AluJo/FRAM SINE Alu -17 295 134 2335 77 7 0 chr11 70014960 70015259 -78768213 - AluSq SINE Alu -12 301 1 2348 68 0 3 chr11 70015264 70015557 -78767915 - AluY SINE Alu -11 300 9 200 352 165 25 chr11 70015795 70016116 -78767356 - L2 LINE L2 -785 2529 2164 2088 112 10 0 chr11 70016117 70016411 -78767061 + AluSx SINE Alu 1 297 -15 2333 80 0 3 chr11 70016414 70016715 -78766757 + AluY SINE Alu 1 300 -11 190 278 0 19 chr11 70016734 70016788 -78766684 + L2 LINE L2 3217 3269 -3 2136 87 14 3 chr11 70017043 70017332 -78766140 - AluSc SINE Alu -17 292 1 730 209 162 31 chr11 70017700 70017850 -78765622 + MLT1A1 LTR MaLR 1 130 -235 2107 125 0 7 chr11 70017850 70018154 -78765318 + AluSx SINE Alu 1 302 -10 730 209 162 31 chr11 70018154 70018262 -78765210 + MLT1A1 LTR MaLR 130 293 -72 683 155 10 0 chr11 70018264 70018367 -78765105 - FLAM_A SINE Alu -38 104 1 292 111 12 123 chr11 70018368 70018402 -78765070 + MLT1A1 LTR MaLR 325 346 -50 2399 76 0 0 chr11 70018402 70018704 -78764768 + AluY SINE Alu 2 303 -8 292 111 12 123 chr11 70018704 70018750 -78764722 + MLT1A1 LTR MaLR 346 396 0 920 142 0 0 chr11 70018811 70018945 -78764527 - AluJo/FRAM SINE Alu -23 289 156 1999 115 7 7 chr11 70018947 70019242 -78764230 + AluSx SINE Alu 1 295 -17 226 162 0 0 chr11 70019242 70019279 -78764193 - Alu SINE Alu -264 37 1 186 133 0 0 chr11 70019279 70019309 -78764163 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 2260 90 3 0 chr11 70019956 70020246 -78763226 - AluSx SINE Alu -21 291 1 2378 68 3 0 chr11 70021318 70021614 -78761858 - AluY SINE Alu -14 297 1 2087 101 0 4 chr11 70021616 70021892 -78761580 - AluSq SINE Alu -38 275 1 241 143 0 0 chr11 70021952 70021994 -78761478 - Alu SINE Alu -261 42 1 2065 118 7 3 chr11 70022046 70022351 -78761121 - AluSx SINE Alu -1 311 6 950 249 39 1 chr11 70022351 70022699 -78760773 - LTR16C LTR ERVL -4 487 97 369 0 0 0 chr11 70023145 70023186 -78760286 + (TTA)n Simple_repeat Simple_repeat 2 42 0 2018 114 0 4 chr11 70023186 70023467 -78760005 - AluSx SINE Alu -32 280 1 2109 113 13 16 chr11 70023476 70023786 -78759686 - AluSp SINE Alu -2 311 3 942 146 14 0 chr11 70023788 70023932 -78759540 - FRAM SINE Alu -15 161 16 2390 64 0 0 chr11 70024886 70025181 -78758291 - AluY SINE Alu -14 297 3 2388 79 0 16 chr11 70025210 70025527 -78757945 + AluSx SINE Alu 1 312 0 327 303 111 56 chr11 70025527 70025689 -78757783 + L2 LINE L2 3026 3196 -76 524 211 4 14 chr11 70025807 70025953 -78757519 - MIR SINE MIR -48 214 72 239 393 37 33 chr11 70026353 70026567 -78756905 - L3 LINE CR1 -111 1466 1252 1456 252 13 43 chr11 70026899 70027364 -78756108 - MLT1C LTR MaLR -8 459 9 22 0 0 0 chr11 70028049 70028071 -78755401 + AT_rich Low_complexity Low_complexity 1 22 0 350 225 108 13 chr11 70028117 70028243 -78755229 + LTR61 LTR ERV1 471 595 0 2192 122 0 3 chr11 70029121 70029433 -78754039 + AluSx SINE Alu 1 311 -1 249 260 195 70 chr11 70029916 70030116 -78753356 + MIR SINE MIR 35 259 -3 272 314 33 16 chr11 70030171 70030292 -78753180 - MIR SINE MIR -52 210 88 779 182 0 0 chr11 70030362 70030483 -78752989 + AluJo/FLAM SINE Alu 1 121 -191 2199 94 0 7 chr11 70030483 70030782 -78752690 - AluSg SINE Alu -13 297 1 225 0 0 0 chr11 70030938 70030963 -78752509 + (A)n Simple_repeat Simple_repeat 1 25 0 2382 83 0 0 chr11 70031148 70031448 -78752024 + AluSg SINE Alu 1 300 -10 21 57 0 0 chr11 70031741 70031776 -78751696 + AT_rich Low_complexity Low_complexity 1 35 0 185 205 26 0 chr11 70032295 70032334 -78751138 + MIR3 SINE MIR 122 161 -47 331 241 69 35 chr11 70035344 70035460 -78748012 - MIR SINE MIR -56 152 33 202 315 94 31 chr11 70036017 70036144 -78747328 + MIR SINE MIR 16 150 -58 26 0 0 0 chr11 70036256 70036282 -78747190 + GC_rich Low_complexity Low_complexity 1 26 0 318 164 16 0 chr11 70037308 70037369 -78746103 - MIR SINE MIR -62 146 85 325 260 71 31 chr11 70037509 70037662 -78745810 + MIR3 SINE MIR 5 163 -71 1191 119 12 107 chr11 70038491 70038599 -78744873 - AluJo SINE Alu -92 220 146 1585 149 0 8 chr11 70038599 70038847 -78744625 - AluSx SINE Alu -31 281 36 1191 119 12 107 chr11 70038847 70038981 -78744491 - AluJo SINE Alu -166 146 1 273 355 9 9 chr11 70039692 70039799 -78743673 + MIR SINE MIR 2 108 -154 911 96 66 0 chr11 70039957 70040093 -78743379 + THE1C LTR MaLR 1 145 -230 899 125 105 0 chr11 70040094 70040246 -78743226 - AluSx SINE Alu -20 292 125 408 155 0 0 chr11 70040246 70040317 -78743155 + (CA)n Simple_repeat Simple_repeat 2 72 0 639 48 19 77 chr11 70040336 70040440 -78743032 - AluY SINE Alu -12 299 202 2384 74 3 0 chr11 70040443 70040742 -78742730 - AluSp SINE Alu -13 300 1 881 128 23 0 chr11 70040742 70040875 -78742597 - AluSx SINE Alu -177 136 1 1277 131 42 17 chr11 70040876 70041112 -78742360 + THE1C LTR MaLR 134 375 0 298 193 140 79 chr11 70041411 70041525 -78741947 - MIR3 SINE MIR -85 123 3 361 302 54 0 chr11 70042336 70042465 -78741007 + MIR3 SINE MIR 11 146 -62 207 69 0 0 chr11 70042514 70042543 -78740929 + (TA)n Simple_repeat Simple_repeat 2 30 0 2029 103 0 17 chr11 70042543 70042833 -78740639 - AluSx SINE Alu -27 285 1 302 302 57 0 chr11 70042987 70043093 -78740379 + HsTC2 DNA Tc2 2 113 -1785 2046 112 3 43 chr11 70043481 70043615 -78739857 + AluSx SINE Alu 2 140 -172 2150 89 0 7 chr11 70043615 70043919 -78739553 + AluSc SINE Alu 1 302 0 2046 112 3 43 chr11 70043919 70044106 -78739366 + AluSx SINE Alu 140 311 -1 188 94 62 0 chr11 70044326 70044358 -78739114 + MIR SINE MIR 159 192 -70 * 226 277 45 9 chr11 70044345 70044457 -78739015 - MIR SINE MIR -131 131 16 628 287 56 5 chr11 70044536 70044752 -78738720 - MIR SINE MIR -8 254 28 326 244 12 12 chr11 70045266 70045348 -78738124 + L2 LINE L2 3226 3307 -6 796 280 142 49 chr11 70045892 70046544 -78736928 - L2 LINE L2 -265 3007 2296 203 346 13 0 chr11 70046590 70046668 -78736804 + L2 LINE L2 3234 3312 -1 227 240 120 0 chr11 70047178 70047253 -78736219 - L2 LINE L2 0 3272 3189 352 238 119 24 chr11 70047443 70047611 -78735861 - L2 LINE L2 -192 3080 2897 2214 122 0 0 chr11 70049348 70049659 -78733813 - AluSx SINE Alu -1 311 1 441 216 8 35 chr11 70049660 70049797 -78733675 + L1ME1 LINE L1 6045 6334 0 827 158 0 0 chr11 70049912 70050045 -78733427 - AluSg/x SINE Alu -8 302 170 555 153 0 0 chr11 70050045 70050130 -78733342 - AluJ/FLAM SINE Alu -226 86 2 22 35 0 0 chr11 70050424 70050453 -78733019 + AT_rich Low_complexity Low_complexity 1 29 0 1246 158 33 9 chr11 70050691 70050906 -78732566 - AluJo SINE Alu -92 220 1 1546 196 37 0 chr11 70050916 70051212 -78732260 - AluJo SINE Alu -5 307 1 2082 116 0 0 chr11 70051247 70051563 -78731909 + AluSx SINE Alu 1 316 0 27 29 0 0 chr11 70051571 70051605 -78731867 + AT_rich Low_complexity Low_complexity 1 34 0 848 138 84 78 chr11 70051737 70051758 -78731714 + AluJb SINE Alu 124 143 -169 2148 90 20 10 chr11 70051758 70052057 -78731415 + AluSx SINE Alu 1 302 -10 848 138 84 78 chr11 70052057 70052202 -78731270 + AluJb SINE Alu 143 291 -21 1941 117 4 0 chr11 70053805 70054127 -78729345 - AluSq SINE Alu 0 325 3 2228 94 0 0 chr11 70054221 70054519 -78728953 - AluSx SINE Alu -14 298 1 846 185 7 0 chr11 70054656 70054802 -78728670 - FRAM SINE Alu -13 163 17 1933 129 34 3 chr11 70054813 70055107 -78728365 - AluSx SINE Alu -9 303 1 521 281 18 12 chr11 70055107 70055274 -78728198 + MIR SINE MIR 92 259 -3 1749 156 17 0 chr11 70055279 70055567 -78727905 - AluJb SINE Alu -15 297 5 1631 149 8 0 chr11 70055602 70055857 -78727615 - AluSx SINE Alu -55 257 1 594 62 0 0 chr11 70056092 70056173 -78727299 - Alu SINE Alu -5 304 224 368 214 0 54 chr11 70056230 70056342 -78727130 - L2 LINE L2 -303 2969 2864 679 226 8 8 chr11 70057343 70057476 -78725996 + FLAM_A SINE Alu 1 133 0 2163 116 3 0 chr11 70057505 70057806 -78725666 - AluSq SINE Alu -11 302 1 223 341 44 0 chr11 70057917 70058008 -78725464 + L2 LINE L2 2926 3020 -252 1998 125 0 41 chr11 70058018 70058196 -78725276 - AluSx SINE Alu 0 312 151 2579 52 0 0 chr11 70058196 70058506 -78724966 - AluY SINE Alu -1 310 1 1998 125 0 41 chr11 70058506 70058647 -78724825 - AluSx SINE Alu -161 151 6 873 211 0 0 chr11 70058860 70059021 -78724451 - FRAM SINE Alu -14 162 2 470 260 47 0 chr11 70059105 70059232 -78724240 - L2 LINE L2 -10 3303 3171 1482 167 39 49 chr11 70059643 70059949 -78723523 + AluJb SINE Alu 3 305 -7 1948 110 7 23 chr11 70059949 70060276 -78723196 + AluSp SINE Alu 1 313 0 1256 169 30 100 chr11 70060540 70060871 -78722601 + AluJo SINE Alu 3 310 -2 2136 113 3 3 chr11 70061232 70061533 -78721939 - AluSx SINE Alu -11 301 1 1057 65 0 22 chr11 70061533 70061671 -78721801 - AluSq/x SINE Alu -177 135 1 256 325 17 0 chr11 70061988 70062108 -78721364 + L1ME LINE L1 5767 5888 -233 1856 157 3 10 chr11 70062108 70062421 -78721051 + AluJb SINE Alu 1 311 -1 738 143 20 7 chr11 70062421 70062568 -78720904 + GA-rich Low_complexity Low_complexity 1 149 0 2576 40 0 0 chr11 70062568 70062868 -78720604 + AluY SINE Alu 1 300 -11 2524 46 3 0 chr11 70062868 70063175 -78720297 + AluY SINE Alu 1 308 -3 204 286 181 0 chr11 70063306 70063411 -78720061 + L2 LINE L2 3145 3268 -4 866 174 25 0 chr11 70063515 70063676 -78719796 + FAM SINE Alu 9 173 -12 433 294 43 54 chr11 70063716 70063821 -78719651 - MIR SINE MIR 0 262 157 2196 92 3 3 chr11 70063821 70064116 -78719356 - AluSg SINE Alu -15 295 1 1660 128 66 0 chr11 70064116 70064404 -78719068 - AluSx SINE Alu -5 307 1 433 294 43 54 chr11 70064404 70064481 -78718991 - MIR SINE MIR -103 159 81 402 258 92 37 chr11 70065666 70065829 -78717643 - MIR3 SINE MIR -16 192 21 514 237 216 16 chr11 70066139 70066329 -78717143 - MIR SINE MIR 0 262 35 496 261 214 53 chr11 70066392 70066533 -78716939 - L2 LINE L2 -704 2610 2493 2371 53 0 0 chr11 70066533 70066841 -78716631 - AluY SINE Alu 0 308 1 496 261 214 53 chr11 70066841 70067272 -78716200 - L2 LINE L2 -821 2493 1921 2037 84 28 7 chr11 70067272 70067558 -78715914 + AluSx SINE Alu 1 292 -20 496 261 214 53 chr11 70067558 70067622 -78715850 - L2 LINE L2 -1393 1921 1869 1090 106 0 0 chr11 70067701 70067879 -78715593 - AluSg/x SINE Alu 0 308 131 2317 69 0 7 chr11 70068098 70068404 -78715068 - AluSx SINE Alu -8 304 1 2100 105 6 19 chr11 70068420 70068735 -78714737 - AluSx SINE Alu -1 311 1 381 296 71 27 chr11 70068814 70069053 -78714419 + MIR SINE MIR 17 256 -6 1888 121 10 13 chr11 70069696 70070009 -78713463 + AluSx SINE Alu 1 312 0 437 326 68 32 chr11 70071420 70071641 -78711831 - L1ME4a LINE L1 -1 6120 5892 22 35 0 0 chr11 70072232 70072261 -78711211 + AT_rich Low_complexity Low_complexity 1 29 0 449 186 93 34 chr11 70072637 70072755 -78710717 - L2 LINE L2 0 3313 3189 1772 117 4 0 chr11 70072936 70073184 -78710288 - AluSx SINE Alu -52 260 12 2092 114 0 10 chr11 70073764 70074070 -78709402 - AluSx SINE Alu -9 303 1 1110 146 26 42 chr11 70074207 70074399 -78709073 + MER5A DNA MER1_type 1 189 0 1923 140 0 6 chr11 70074571 70074885 -78708587 - AluSq SINE Alu -1 312 1 2161 107 0 0 chr11 70074887 70075186 -78708286 - AluSx SINE Alu -13 299 1 1880 108 43 0 chr11 70075197 70075474 -78707998 - AluSg SINE Alu -20 290 2 1035 183 69 5 chr11 70075697 70075899 -78707573 + MER20 DNA MER1_type 5 219 0 23 0 0 0 chr11 70075959 70075982 -78707490 + AT_rich Low_complexity Low_complexity 1 23 0 1975 148 13 0 chr11 70075983 70076288 -78707184 - AluSx SINE Alu -3 309 1 2032 120 17 0 chr11 70076546 70076846 -78706626 - AluSp SINE Alu -7 306 2 226 323 48 48 chr11 70077247 70077371 -78706101 - MER91C DNA MER1_type -2 138 15 561 272 134 13 chr11 70077608 70077840 -78705632 - MIR SINE MIR -1 261 2 371 278 60 56 chr11 70077930 70078238 -78705234 - L2 LINE L2 0 3313 2918 429 319 116 55 chr11 70078241 70078620 -78704852 - L2 LINE L2 -15 3298 2897 530 275 130 89 chr11 70078652 70079267 -78704205 - L2 LINE L2 -414 2900 2261 2104 86 3 10 chr11 70079289 70079579 -78703893 - AluSc SINE Alu -21 288 1 303 224 118 0 chr11 70079579 70079655 -78703817 - MER7A DNA MER2_type -263 83 1 958 169 60 27 chr11 70079916 70079982 -78703490 + MER5A DNA MER1_type 1 63 -126 1690 147 0 0 chr11 70079982 70080233 -78703239 + AluSx SINE Alu 1 251 -61 958 169 60 27 chr11 70080233 70080349 -78703123 + MER5A DNA MER1_type 63 189 0 2197 108 0 9 chr11 70080713 70081028 -78702444 - AluSx SINE Alu 0 312 1 801 149 8 30 chr11 70081028 70081162 -78702310 - AluJo/FLAM SINE Alu -171 131 1 1630 161 27 7 chr11 70081188 70081487 -78701985 - AluSx SINE Alu -7 305 1 1833 150 0 17 chr11 70081566 70081859 -78701613 + AluJb SINE Alu 5 292 -20 2151 99 3 3 chr11 70081953 70082247 -78701225 + AluSq SINE Alu 1 294 -19 721 181 82 16 chr11 70082686 70082868 -78700604 - L1MA4A LINE L1 -4 6299 6106 1728 122 48 14 chr11 70082868 70083162 -78700310 + AluY SINE Alu 1 304 -7 822 138 0 0 chr11 70083162 70083292 -78700180 + AluSg/x SINE Alu 178 307 -3 1449 113 22 127 chr11 70083298 70083344 -78700128 - L1MC3 LINE L1 -138 7647 7598 2204 68 26 39 chr11 70083344 70083511 -78699961 + L1PA8 LINE L1 5866 6029 -143 2342 98 3 0 chr11 70083511 70083809 -78699663 - AluSp SINE Alu -16 297 1 2204 68 26 39 chr11 70083809 70083952 -78699520 + L1PA8 LINE L1 6029 6172 0 1449 113 22 127 chr11 70083952 70083977 -78699495 - L1MC3 LINE L1 -187 7598 7572 2283 106 7 0 chr11 70083977 70084279 -78699193 - AluSp SINE Alu -9 304 1 1449 113 22 127 chr11 70084279 70084291 -78699181 - L1MC3 LINE L1 -213 7572 7560 2320 88 0 7 chr11 70084291 70084597 -78698875 - AluY SINE Alu -7 304 1 1449 113 22 127 chr11 70084597 70084728 -78698744 - L1MC3 LINE L1 -225 7560 7482 1288 185 100 11 chr11 70084728 70084998 -78698474 - AluJb SINE Alu -18 294 1 1449 113 22 127 chr11 70084998 70085143 -78698329 - L1MC3 LINE L1 -303 7482 7323 280 60 120 0 chr11 70085156 70085206 -78698266 - Alu SINE Alu -1 299 244 811 170 0 34 chr11 70085428 70085575 -78697897 + AluJo SINE Alu 1 142 -170 2013 137 0 49 chr11 70085576 70085904 -78697568 + AluSx SINE Alu 1 312 0 2253 124 0 0 chr11 70086433 70086731 -78696741 + AluSx SINE Alu 3 300 -12 2257 107 0 0 chr11 70086735 70087026 -78696446 + AluSx SINE Alu 4 294 -18 1430 104 55 5 chr11 70087028 70087230 -78696242 + AluSp SINE Alu 3 214 -99 2262 119 0 0 chr11 70087317 70087627 -78695845 + AluSx SINE Alu 1 310 -2 578 159 9 0 chr11 70087661 70087768 -78695704 + L1MC3 LINE L1 7461 7568 -217 1747 168 130 50 chr11 70087768 70088093 -78695379 + LTR32 LTR ERVL 15 312 -159 1710 150 3 65 chr11 70088093 70088400 -78695072 + AluJb SINE Alu 1 288 -24 351 0 0 0 chr11 70088404 70088443 -78695029 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 1747 168 130 50 chr11 70088443 70088535 -78694937 + LTR32 LTR ERVL 314 471 0 1038 130 67 0 chr11 70088535 70088743 -78694729 + L1MC3 LINE L1 7564 7785 0 796 176 27 20 chr11 70088755 70088903 -78694569 + AluJb SINE Alu 81 229 -83 2320 69 7 3 chr11 70088942 70089231 -78694241 - AluSg SINE Alu -20 290 1 1596 198 3 23 chr11 70089231 70089534 -78693938 - AluJo SINE Alu -15 297 1 624 251 18 41 chr11 70089757 70089928 -78693544 + MIR SINE MIR 32 198 -64 2079 128 10 0 chr11 70089968 70090257 -78693215 - AluSq SINE Alu -21 292 1 285 75 0 0 chr11 70090257 70090297 -78693175 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 2104 86 52 0 chr11 70090297 70090565 -78692907 - AluSx SINE Alu -30 282 1 1021 176 0 93 chr11 70090565 70090878 -78692594 - AluSx SINE Alu -15 297 14 260 154 154 0 chr11 70090900 70090965 -78692507 - AluJ/FRAM SINE Alu 0 302 228 1927 94 73 11 chr11 70090997 70091272 -78692200 - AluSg SINE Alu -18 292 1 511 245 128 49 chr11 70091280 70091484 -78691988 - MIR SINE MIR -10 252 33 2081 96 7 30 chr11 70091554 70091855 -78691617 + AluSg SINE Alu 1 294 -16 1274 65 0 0 chr11 70091855 70092024 -78691448 - L1PA8 LINE L1 -138 6034 5866 1841 91 8 20 chr11 70092143 70092395 -78691077 - AluSx SINE Alu -63 249 1 273 119 0 0 chr11 70093102 70093144 -78690328 + (A)n Simple_repeat Simple_repeat 1 42 0 2402 90 0 0 chr11 70093149 70093450 -78690022 + AluSg SINE Alu 1 301 -9 2247 118 7 0 chr11 70093865 70094171 -78689301 + AluSx SINE Alu 1 308 -4 994 152 0 0 chr11 70094178 70094329 -78689143 + AluJb SINE Alu 144 294 -18 339 25 0 0 chr11 70094333 70094373 -78689099 + (TG)n Simple_repeat Simple_repeat 1 40 0 863 138 0 0 chr11 70094373 70094489 -78688983 - FLAM_C SINE Alu -27 116 1 1048 111 0 63 chr11 70094721 70094884 -78688588 + AluJb SINE Alu 136 287 -25 2428 86 16 0 chr11 70094884 70095188 -78688284 + AluSq SINE Alu 1 309 -4 1048 111 0 63 chr11 70095188 70095213 -78688259 + AluJb SINE Alu 287 312 0 552 275 27 7 chr11 70095613 70095762 -78687710 - MIR SINE MIR -64 198 47 2100 110 20 10 chr11 70095790 70096082 -78687390 - AluSq SINE Alu -17 296 2 36 23 0 0 chr11 70097008 70097051 -78686421 + AT_rich Low_complexity Low_complexity 1 43 0 2556 67 0 6 chr11 70097059 70097372 -78686100 + AluY SINE Alu 1 311 0 1796 150 51 0 chr11 70097405 70097678 -78685794 - AluSx SINE Alu -25 287 1 210 37 0 0 chr11 70097679 70097706 -78685766 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1318 112 0 0 chr11 70097717 70097886 -78685586 - AluSx SINE Alu -143 169 1 669 168 80 16 chr11 70097906 70097918 -78685554 - FLAM_C SINE Alu -169 133 123 1920 141 21 7 chr11 70097918 70098208 -78685264 + AluSx SINE Alu 1 294 -18 669 168 80 16 chr11 70098208 70098320 -78685152 - FLAM_C SINE Alu -179 123 1 2186 118 0 19 chr11 70098356 70098671 -78684801 - AluSx SINE Alu -1 311 3 26 30 0 0 chr11 70098671 70098704 -78684768 + AT_rich Low_complexity Low_complexity 1 33 0 1975 138 17 0 chr11 70098704 70098993 -78684479 - AluSx SINE Alu -16 296 3 716 151 0 0 chr11 70099116 70099235 -78684237 + AluSp/q SINE Alu 189 307 -6 1510 130 169 0 chr11 70099264 70099518 -78683954 - AluSg SINE Alu 0 300 4 2216 115 0 0 chr11 70099530 70099825 -78683647 - AluSg SINE Alu -15 295 1 2223 117 3 25 chr11 70099858 70100175 -78683297 + AluSx SINE Alu 1 310 -2 2364 78 0 13 chr11 70100178 70100484 -78682988 + AluY SINE Alu 1 302 -9 2090 118 0 16 chr11 70100505 70100811 -78682661 + AluY SINE Alu 2 302 -9 206 269 172 48 chr11 70101383 70101651 -78681821 - L2 LINE L2 -430 2884 2584 348 316 22 37 chr11 70101682 70101751 -78681721 - L2 LINE L2 0 3313 3245 720 64 0 0 chr11 70101751 70101845 -78681627 + (TTCC)n Simple_repeat Simple_repeat 3 96 0 2366 75 0 3 chr11 70101845 70102137 -78681335 - AluSx SINE Alu -21 291 1 348 316 22 37 chr11 70102137 70102202 -78681270 - L2 LINE L2 -66 3247 3180 232 343 76 0 chr11 70102512 70102617 -78680855 + MIR SINE MIR 48 160 -102 539 282 21 60 chr11 70102927 70102996 -78680476 + MIR SINE MIR 8 78 -184 2134 132 3 3 chr11 70102996 70103300 -78680172 - AluSg SINE Alu -6 304 1 539 282 21 60 chr11 70103300 70103464 -78680008 + MIR SINE MIR 78 232 -30 2235 123 3 0 chr11 70103484 70103793 -78679679 - AluSx SINE Alu -2 310 1 1311 84 18 0 chr11 70103894 70104061 -78679411 + FRAM SINE Alu 1 166 -10 2096 153 0 0 chr11 70104392 70104687 -78678785 - AluSx SINE Alu -17 295 1 202 137 0 82 chr11 70104907 70104980 -78678492 + (TTTTTA)n Simple_repeat Simple_repeat 6 72 0 2314 88 0 7 chr11 70104982 70105276 -78678196 - AluSq SINE Alu -21 292 1 252 0 0 0 chr11 70105561 70105589 -78677883 + (T)n Simple_repeat Simple_repeat 1 28 0 180 0 0 0 chr11 70105614 70105634 -78677838 + (G)n Simple_repeat Simple_repeat 1 20 0 207 0 0 0 chr11 70105828 70105851 -78677621 + (A)n Simple_repeat Simple_repeat 1 23 0 1730 159 13 23 chr11 70105851 70106153 -78677319 + AluJo SINE Alu 1 299 -13 2329 81 0 0 chr11 70106153 70106499 -78676973 + AluY SINE Alu 1 346 0 2089 125 10 10 chr11 70106505 70106810 -78676662 + AluSc SINE Alu 1 305 -4 21 0 0 0 chr11 70107575 70107596 -78675876 + AT_rich Low_complexity Low_complexity 1 21 0 261 232 10 101 chr11 70109567 70109666 -78673806 - MIR SINE MIR -82 180 91 2154 94 3 18 chr11 70110286 70110572 -78672900 + AluSx SINE Alu 1 282 -30 2300 125 0 0 chr11 70111128 70111441 -78672031 - AluSq SINE Alu 0 313 1 2385 88 0 0 chr11 70111857 70112154 -78671318 - AluSg SINE Alu -9 301 5 2260 102 10 3 chr11 70112199 70112494 -78670978 - AluSp SINE Alu -16 297 1 2293 110 3 0 chr11 70112641 70112941 -78670531 - AluSp SINE Alu -12 301 1 1662 150 16 52 chr11 70112947 70113253 -78670219 - AluJb SINE Alu -15 297 3 1985 140 3 10 chr11 70113254 70113561 -78669911 - AluSx SINE Alu -7 305 1 1962 122 20 24 chr11 70113599 70113893 -78669579 + AluSx SINE Alu 8 300 -12 262 333 44 33 chr11 70113893 70114076 -78669396 - MIR SINE MIR -58 150 3 236 345 71 30 chr11 70114111 70114279 -78669193 + L2 LINE L2 2877 3051 -221 295 222 176 19 chr11 70114528 70114636 -78668836 + MIR SINE MIR 17 141 -67 507 251 181 5 chr11 70114741 70114940 -78668532 - MIR SINE MIR -17 245 12 1159 8 0 8 chr11 70115428 70115554 -78667918 + AluY SINE Alu 88 212 -99 1587 155 8 8 chr11 70115554 70115805 -78667667 - AluSx SINE Alu -59 253 3 752 149 0 0 chr11 70115928 70116049 -78667423 + AluSg/x SINE Alu 187 307 -3 2345 101 3 0 chr11 70116061 70116359 -78667113 + AluSp SINE Alu 6 304 -9 895 130 0 8 chr11 70116403 70116534 -78666938 - FLAM_C SINE Alu -3 130 1 425 125 3 0 chr11 70116553 70116628 -78666844 - L1MB1 LINE L1 -1 6167 6101 478 164 100 36 chr11 70116873 70116983 -78666489 + L2 LINE L2 3189 3305 -8 1719 156 19 32 chr11 70117353 70117661 -78665811 - AluJb SINE Alu -8 304 1 1954 121 43 3 chr11 70117667 70117949 -78665523 - AluSp SINE Alu -18 295 3 2257 107 0 0 chr11 70117951 70118242 -78665230 - AluSx SINE Alu -18 294 4 2253 124 0 0 chr11 70118246 70118544 -78664928 - AluSx SINE Alu -12 300 3 2013 137 0 49 chr11 70119072 70119400 -78664072 - AluSx SINE Alu 0 312 1 811 170 0 34 chr11 70119401 70119548 -78663924 - AluJo SINE Alu -170 142 1 615 116 18 54 chr11 70119640 70119752 -78663720 - AluJ SINE Alu -6 306 199 450 172 0 103 chr11 70119752 70119868 -78663604 - AluJ SINE Alu -207 105 2 1561 167 109 7 chr11 70119879 70120056 -78663416 - AluSg SINE Alu -2 308 92 2217 112 3 20 chr11 70120056 70120361 -78663111 - AluSx SINE Alu -12 300 1 1561 167 109 7 chr11 70120361 70120459 -78663013 - AluSg SINE Alu -218 92 5 1231 213 3 52 chr11 70120662 70120990 -78662482 - AluSq SINE Alu -1 312 1 2057 121 14 0 chr11 70121102 70121122 -78662350 - AluSq SINE Alu -12 301 283 303 28 0 0 chr11 70121122 70121158 -78662314 + (TG)n Simple_repeat Simple_repeat 1 36 0 2057 121 14 0 chr11 70121158 70121434 -78662038 - AluSq SINE Alu -30 283 1 2091 116 4 0 chr11 70121438 70121713 -78661759 - AluSx SINE Alu -25 287 12 185 317 0 0 chr11 70121876 70121917 -78661555 - L2 LINE L2 -96 3176 3136 637 301 5 11 chr11 70122135 70122321 -78661151 - MIR3 SINE MIR -8 200 16 252 278 31 10 chr11 70122463 70122560 -78660912 + MER94 DNA DNA 4 102 -32 838 160 170 27 chr11 70122613 70122801 -78660671 + AluJo SINE Alu 92 306 -6 2357 81 3 3 chr11 70122810 70123105 -78660367 + AluSp SINE Alu 5 299 -14 733 159 26 0 chr11 70123136 70123249 -78660223 + AluJb SINE Alu 2 117 -195 2415 97 0 0 chr11 70123268 70123568 -78659904 + AluSx SINE Alu 1 300 -12 1351 169 30 100 chr11 70123929 70124260 -78659212 - AluJo SINE Alu -2 310 3 2065 110 7 23 chr11 70124524 70124851 -78658621 - AluSp SINE Alu 0 313 1 207 0 0 0 chr11 70124851 70124874 -78658598 + (T)n Simple_repeat Simple_repeat 1 23 0 258 186 0 0 chr11 70125002 70125045 -78658427 + FLAM SINE Alu 75 117 -16 5788 200 37 87 chr11 70125108 70125668 -78657804 + L1M4c LINE L1 2025 2612 -3770 1918 138 3 3 chr11 70125668 70126017 -78657455 - AluSx SINE Alu 0 349 1 5788 200 37 87 chr11 70126017 70126055 -78657417 + L1M4c LINE L1 2612 2650 -3732 1233 163 96 67 chr11 70126055 70126337 -78657135 + AluJo SINE Alu 1 290 -22 2577 61 0 13 chr11 70126339 70126650 -78656822 + AluY SINE Alu 1 307 -4 1375 220 10 20 chr11 70126657 70126957 -78656515 + AluJb SINE Alu 5 301 -1 5788 200 37 87 chr11 70126957 70127596 -78655876 + L1M4c LINE L1 2657 3327 -3055 756 176 0 0 chr11 70127596 70127704 -78655768 + FLAM_A SINE Alu 8 115 -27 2234 102 7 0 chr11 70127704 70127999 -78655473 + AluSq SINE Alu 1 297 -16 5788 200 37 87 chr11 70127999 70128274 -78655198 + L1M4c LINE L1 3326 3613 -2769 2212 122 0 0 chr11 70128274 70128568 -78654904 + AluSq SINE Alu 1 294 -19 5788 200 37 87 chr11 70128568 70128630 -78654842 + L1M4c LINE L1 3613 3677 -2705 1902 151 11 3 chr11 70128630 70128915 -78654557 + AluSx SINE Alu 7 293 -19 5788 200 37 87 chr11 70128915 70129190 -78654282 + L1M4c LINE L1 3677 3964 -2418 2109 68 68 7 chr11 70129190 70129471 -78654001 - AluSc SINE Alu -11 298 1 5788 200 37 87 chr11 70129471 70130073 -78653399 + L1M4c LINE L1 3964 4466 -1916 330 258 146 28 chr11 70130333 70130582 -78652890 - L1ME3A LINE L1 -158 6012 5725 216 0 0 0 chr11 70130582 70130606 -78652866 + (T)n Simple_repeat Simple_repeat 1 24 0 2231 88 3 7 chr11 70130972 70131267 -78652205 - AluY SINE Alu -17 294 1 1452 120 29 51 chr11 70131268 70131398 -78652074 - L1MC3 LINE L1 -195 7590 7459 1257 186 104 11 chr11 70131398 70131667 -78651805 - AluJb SINE Alu -18 294 1 1452 120 29 51 chr11 70131667 70131810 -78651662 - L1MC3 LINE L1 -326 7459 7323 2158 93 17 17 chr11 70131820 70132121 -78651351 - AluY SINE Alu -9 302 2 2250 102 10 3 chr11 70132125 70132420 -78651052 - AluSx SINE Alu -15 297 1 357 277 134 43 chr11 70132420 70132651 -78650821 - L1ME3A LINE L1 -391 5730 5521 2207 105 0 29 chr11 70132651 70132965 -78650507 - AluSx SINE Alu -7 305 1 357 277 134 43 chr11 70132965 70133128 -78650344 - L1ME3A LINE L1 -600 5521 5311 1999 138 3 0 chr11 70133254 70133537 -78649935 + AluSp SINE Alu 1 284 -29 186 43 0 0 chr11 70133537 70133560 -78649912 + (CATA)n Simple_repeat Simple_repeat 2 24 0 588 207 0 16 chr11 70133560 70133681 -78649791 - FLAM_C SINE Alu -21 122 4 1267 107 0 0 chr11 70134892 70135069 -78648403 + AluSg/x SINE Alu 131 307 -5 1998 112 48 0 chr11 70135170 70135464 -78648008 - AluSq SINE Alu -4 309 2 3054 98 8 68 chr11 70135464 70135691 -78647781 + MER75 DNA T2_type 45 284 -230 1901 108 0 76 chr11 70135691 70135826 -78647646 + AluSx SINE Alu 1 145 -167 1948 126 7 0 chr11 70135826 70136119 -78647353 + AluSp SINE Alu 1 295 -18 2141 94 7 0 chr11 70136120 70136407 -78647065 + AluSq SINE Alu 1 289 -24 180 0 0 0 chr11 70136413 70136433 -78647039 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1901 108 0 76 chr11 70136433 70136604 -78646868 + AluSx SINE Alu 150 292 -20 3054 98 8 68 chr11 70136604 70136778 -78646694 + MER75 DNA T2_type 284 413 -101 2425 54 0 0 chr11 70136778 70137075 -78646397 + AluY SINE Alu 1 297 -14 3054 98 8 68 chr11 70137075 70137172 -78646300 + MER75 DNA T2_type 413 514 0 411 200 200 27 chr11 70137183 70137293 -78646179 + FLAM_A SINE Alu 1 129 -13 1789 117 0 4 chr11 70137906 70138170 -78645302 - AluSx SINE Alu -11 301 39 1722 151 26 7 chr11 70138747 70139052 -78644420 + AluJb SINE Alu 1 311 -1 1525 183 53 0 chr11 70139075 70139359 -78644113 - AluJo SINE Alu -13 299 1 539 321 62 16 chr11 70139435 70139628 -78643844 - MIR SINE MIR -25 237 36 2274 77 0 3 chr11 70139926 70140224 -78643248 + AluSg SINE Alu 1 297 -13 2327 70 3 3 chr11 70140232 70140530 -78642942 + AluY SINE Alu 1 298 -13 640 215 0 15 chr11 70140543 70140678 -78642794 + FLAM_A SINE Alu 1 133 0 1368 217 10 16 chr11 70140686 70140999 -78642473 + AluJb SINE Alu 1 311 -1 228 264 75 19 chr11 70141026 70141132 -78642340 + L1ME4a LINE L1 5968 6079 -42 1203 165 18 13 chr11 70141285 70141509 -78641963 - AluJb SINE Alu -1 311 87 1189 84 0 0 chr11 70142830 70142985 -78640487 - L1PA6 LINE L1 -2 6152 5998 36 0 0 0 chr11 70143025 70143061 -78640411 + AT_rich Low_complexity Low_complexity 1 36 0 2049 117 0 7 chr11 70143061 70143352 -78640120 - AluSx SINE Alu -23 289 1 2115 93 3 3 chr11 70143579 70143868 -78639604 + AluSg SINE Alu 1 289 -21 972 172 0 11 chr11 70143876 70144050 -78639422 + FRAM SINE Alu 1 169 -7 2998 140 68 9 chr11 70144050 70144627 -78638845 - L1MB4 LINE L1 -8 6172 5562 1496 231 51 78 chr11 70144627 70145044 -78638428 - L1MC4 LINE L1 -266 7776 7378 2243 110 0 0 chr11 70145044 70145354 -78638118 - AluSx SINE Alu -2 310 1 1496 231 51 78 chr11 70145354 70145539 -78637933 - L1MC4 LINE L1 -664 7378 7190 180 0 0 0 chr11 70145556 70145576 -78637896 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 728 156 0 0 chr11 70145577 70145686 -78637786 - FAM SINE Alu -23 162 54 2254 68 0 3 chr11 70145714 70146009 -78637463 - AluY SINE Alu -17 294 1 2086 92 7 10 chr11 70146015 70146308 -78637164 - AluSg SINE Alu -18 292 1 2060 93 7 0 chr11 70146312 70146625 -78636847 - AluSg SINE Alu 0 315 1 309 321 85 36 chr11 70146636 70146801 -78636671 + L1ME4a LINE L1 5834 6006 -115 2093 119 3 0 chr11 70146842 70147137 -78636335 - AluSx SINE Alu -16 296 1 198 279 233 23 chr11 70147335 70147464 -78636008 + MIR SINE MIR 67 222 -40 233 385 52 22 chr11 70147507 70147642 -78635830 - L2 LINE L2 0 3272 3134 625 172 15 52 chr11 70148134 70148149 -78635323 - FLAM_C SINE Alu -179 133 119 276 30 0 0 chr11 70148149 70148182 -78635290 + (TTA)n Simple_repeat Simple_repeat 1 33 0 625 172 15 52 chr11 70148182 70148300 -78635172 - FLAM_C SINE Alu -193 119 5 1455 169 105 0 chr11 70148373 70148640 -78634832 + AluJo SINE Alu 1 295 -17 22 0 0 0 chr11 70148794 70148816 -78634656 + AT_rich Low_complexity Low_complexity 1 22 0 2264 81 0 16 chr11 70152495 70152803 -78630669 + AluSx SINE Alu 1 303 -9 306 50 0 0 chr11 70152973 70153013 -78630459 + (TG)n Simple_repeat Simple_repeat 1 40 0 516 125 229 0 chr11 70153395 70153491 -78629981 - FLAM_C SINE Alu -24 119 2 2161 101 7 3 chr11 70154240 70154548 -78628924 + AluSq SINE Alu 1 309 -4 195 307 79 40 chr11 70155029 70155130 -78628342 - L2 LINE L2 -15 3257 3153 668 206 67 81 chr11 70155296 70155412 -78628060 - MER58A DNA MER1_type -2196 224 111 2312 77 0 3 chr11 70155412 70155711 -78627761 + AluY SINE Alu 1 298 -13 668 206 67 81 chr11 70155711 70155803 -78627669 - MER58A DNA MER1_type -2309 111 19 491 222 0 0 chr11 70156986 70157076 -78626396 - L2 LINE L2 -33 3280 3191 298 277 179 9 chr11 70157297 70157409 -78626063 - MER5B DNA MER1_type -47 131 1 391 253 53 0 chr11 70157443 70157538 -78625934 - HsTC2 DNA Tc2 -1781 117 18 386 194 0 0 chr11 70157644 70157716 -78625756 - AluJ/FRAM SINE Alu 0 302 231 949 180 24 0 chr11 70157861 70158028 -78625444 + AluJb SINE Alu 118 288 -24 1979 110 0 20 chr11 70158056 70158356 -78625116 - AluSq SINE Alu -18 295 2 2003 194 88 5 chr11 70158356 70158705 -78624767 - Tigger7 DNA MER2_type -250 483 90 2102 110 3 3 chr11 70158705 70159005 -78624467 + AluSx SINE Alu 1 300 -12 2003 194 88 5 chr11 70159005 70159089 -78624383 - Tigger7 DNA MER2_type -643 90 14 219 255 0 0 chr11 70159113 70159160 -78624312 + GA-rich Low_complexity Low_complexity 3 49 0 1097 133 0 0 chr11 70159370 70159535 -78623937 + AluSg/x SINE Alu 135 299 -11 2300 77 7 0 chr11 70159540 70159839 -78623633 + AluSq SINE Alu 1 301 -12 924 181 0 6 chr11 70159842 70160002 -78623470 + AluJo/FRAM SINE Alu 137 295 -7 233 242 60 5 chr11 70160627 70160725 -78622747 + MIR SINE MIR 37 143 -65 2262 89 0 0 chr11 70161029 70161321 -78622151 - AluSg SINE Alu -18 292 1 312 136 17 34 chr11 70161346 70161405 -78622067 + AluJo SINE Alu 84 141 -161 2378 65 0 13 chr11 70161410 70161716 -78621756 + AluY SINE Alu 1 302 -9 4262 161 87 45 chr11 70161818 70161840 -78621632 - L1MC2 LINE L1 -110 6234 6214 2195 92 0 3 chr11 70161840 70162143 -78621329 + AluSx SINE Alu 1 302 -10 4262 161 87 45 chr11 70162143 70162203 -78621269 - L1MC2 LINE L1 -130 6214 6158 488 200 139 0 chr11 70162203 70162318 -78621154 + FLAM_A SINE Alu 1 131 -2 4262 161 87 45 chr11 70162318 70163039 -78620433 - L1MC2 LINE L1 -186 6158 5361 624 180 62 31 chr11 70163039 70163167 -78620305 - FLAM_C SINE Alu -1 132 1 4262 161 87 45 chr11 70163167 70163697 -78619775 - L1MC2 LINE L1 -983 5361 4855 545 239 66 33 chr11 70163829 70164042 -78619430 - L1MC4 LINE L1 -548 7494 7275 273 250 111 0 chr11 70164070 70164142 -78619330 - L2 LINE L2 -36 3236 3157 697 169 61 14 chr11 70164262 70164410 -78619062 + L1MB3 LINE L1 6019 6173 -10 2106 119 7 0 chr11 70164869 70165172 -78618300 + AluSq SINE Alu 1 305 -8 661 197 16 0 chr11 70165205 70165332 -78618140 + FLAM_A SINE Alu 1 129 -4 654 234 8 0 chr11 70165459 70165583 -78617889 + FLAM_C SINE Alu 2 126 -17 265 246 171 48 chr11 70165830 70166017 -78617455 + MER112 DNA MER1_type 1 210 -50 1394 189 69 51 chr11 70166048 70166423 -78617049 + Charlie1 DNA MER1_type 2 383 -2378 2225 95 0 16 chr11 70166769 70167085 -78616387 - AluSx SINE Alu -1 311 1 1264 217 20 7 chr11 70167090 70167389 -78616083 - AluJo SINE Alu -9 303 1 2181 97 0 13 chr11 70167951 70168251 -78615221 + AluSc SINE Alu 1 296 -13 285 237 415 0 chr11 70168277 70168429 -78615043 - MIR SINE MIR -44 218 4 304 289 174 26 chr11 70168434 70168624 -78614848 - MIR SINE MIR -25 237 20 633 238 7 7 chr11 70168853 70168996 -78614476 - FLAM_C SINE Alu 0 143 1 1709 126 85 0 chr11 70169006 70169277 -78614195 - AluSx SINE Alu -18 294 1 2109 104 3 3 chr11 70169504 70169801 -78613671 - AluSp SINE Alu -16 297 1 1827 112 0 0 chr11 70170591 70170840 -78612632 - AluSx SINE Alu -52 260 12 2066 114 0 10 chr11 70171420 70171726 -78611746 - AluSx SINE Alu -9 303 1 1088 146 26 42 chr11 70171863 70172055 -78611417 + MER5A DNA MER1_type 1 189 0 1890 132 0 7 chr11 70172238 70172541 -78610931 - AluSq SINE Alu -12 301 1 2109 107 0 3 chr11 70172543 70172843 -78610629 - AluSx SINE Alu -13 299 1 378 0 0 0 chr11 70173550 70173592 -78609880 + (A)n Simple_repeat Simple_repeat 1 42 0 1946 93 0 38 chr11 70173622 70173913 -78609559 + AluSx SINE Alu 24 303 -9 528 75 38 0 chr11 70174166 70174246 -78609226 - AluY SINE Alu -227 84 2 343 250 0 13 chr11 70174249 70174325 -78609147 - MER58B DNA MER1_type -6 335 261 1934 92 14 24 chr11 70174380 70174540 -78608932 - AluSg SINE Alu -20 290 133 1809 104 3 23 chr11 70174540 70174847 -78608625 - AluY SINE Alu -10 301 1 1934 92 14 24 chr11 70174847 70174979 -78608493 - AluSg SINE Alu -177 133 1 24 0 0 0 chr11 70174979 70175003 -78608469 + AT_rich Low_complexity Low_complexity 1 24 0 1556 149 0 8 chr11 70175003 70175251 -78608221 - AluSx SINE Alu -31 281 36 960 92 15 0 chr11 70175254 70175385 -78608087 - AluJo/FLAM SINE Alu -179 133 1 274 343 10 10 chr11 70176096 70176195 -78607277 + MIR SINE MIR 2 100 -162 712 115 65 36 chr11 70176370 70176509 -78606963 + THE1C LTR MaLR 3 145 -230 870 123 34 14 chr11 70176520 70176666 -78606806 - AluSx SINE Alu -39 271 123 390 159 0 0 chr11 70176666 70176735 -78606737 + (CA)n Simple_repeat Simple_repeat 2 70 0 751 171 13 19 chr11 70176857 70177015 -78606457 - L1MA5 LINE L1 -345 5955 5799 201 39 0 0 chr11 70177015 70177041 -78606431 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 1714 133 56 0 chr11 70177041 70177311 -78606161 - AluSx SINE Alu -27 285 1 255 319 69 14 chr11 70177424 70177568 -78605904 - L1ME3A LINE L1 -28 6142 5991 26 30 0 0 chr11 70177632 70177665 -78605807 + AT_rich Low_complexity Low_complexity 1 33 0 560 137 36 93 chr11 70177881 70178020 -78605452 - AluSx SINE Alu -181 132 2 1525 101 4 17 chr11 70178034 70178272 -78605200 - AluSx SINE Alu -15 297 63 180 0 0 0 chr11 70178375 70178395 -78605077 + (C)n Simple_repeat Simple_repeat 1 20 0 2339 70 7 0 chr11 70178395 70178693 -78604779 - AluY SINE Alu -11 300 1 3384 106 10 14 chr11 70178696 70179206 -78604266 - Tigger1 DNA MER2_type -334 2084 1577 804 200 71 0 chr11 70179220 70179375 -78604097 - FAM SINE Alu -9 166 1 261 0 0 0 chr11 70179378 70179407 -78604065 + (T)n Simple_repeat Simple_repeat 1 29 0 2176 105 0 0 chr11 70179834 70180130 -78603342 + AluSg SINE Alu 1 296 -14 357 24 0 0 chr11 70180131 70180173 -78603299 + (GA)n Simple_repeat Simple_repeat 1 42 0 2110 117 13 0 chr11 70180213 70180522 -78602950 + AluSq SINE Alu 1 313 0 342 259 49 74 chr11 70180689 70180851 -78602621 + L1ME4a LINE L1 5964 6121 0 680 231 0 0 chr11 70181635 70181756 -78601716 - FLAM_A SINE Alu -12 121 1 1915 203 47 5 chr11 70181762 70182211 -78601261 + L1MB3 LINE L1 5709 6176 -7 1883 133 0 13 chr11 70182495 70182795 -78600677 - AluJb SINE Alu -16 296 1 385 200 73 36 chr11 70182999 70183114 -78600358 + MIR SINE MIR 15 124 -138 1841 168 92 17 chr11 70183114 70183518 -78599954 - Tigger2a DNA MER2_type 0 434 1 385 200 73 36 chr11 70183518 70183550 -78599922 + MIR SINE MIR 124 262 0 775 126 28 70 chr11 70183602 70183745 -78599727 + Tigger1 DNA MER2_type 21 157 -2261 2365 66 42 0 chr11 70183761 70184049 -78599423 + AluYa5 SINE Alu 2 301 -10 987 136 14 0 chr11 70184999 70185139 -78598333 + FRAM SINE Alu 16 157 -19 2214 113 13 16 chr11 70185145 70185455 -78598017 + AluSp SINE Alu 3 311 -2 2114 114 0 4 chr11 70185464 70185745 -78597727 + AluSx SINE Alu 1 280 -32 369 0 0 0 chr11 70185745 70185786 -78597686 + (TAA)n Simple_repeat Simple_repeat 2 42 0 1006 249 39 1 chr11 70186232 70186580 -78596892 + LTR16C LTR ERVL 97 487 -4 2169 118 7 3 chr11 70186580 70186885 -78596587 + AluSx SINE Alu 6 311 -1 256 143 0 0 chr11 70186937 70186979 -78596493 + Alu SINE Alu 1 42 -257 2188 101 0 4 chr11 70187039 70187315 -78596157 + AluSq SINE Alu 1 275 -38 2107 112 0 10 chr11 70187317 70187612 -78595860 + AluY SINE Alu 1 292 -19 732 147 92 25 chr11 70188071 70188234 -78595238 - L1MA4A LINE L1 -24 6279 6106 2342 78 0 7 chr11 70188234 70188527 -78594945 + AluY SINE Alu 1 291 -20 305 237 102 0 chr11 70188643 70188761 -78594711 - L1MC5 LINE L1 -46 7915 7786 1851 132 46 12 chr11 70188896 70189222 -78594250 - Tigger1 DNA MER2_type -4 2414 2078 1056 180 5 52 chr11 70189246 70189457 -78594015 - AluJo SINE Alu -11 301 101 2526 72 0 13 chr11 70189474 70189780 -78593692 - AluY SINE Alu -9 302 1 1498 118 16 4 chr11 70189783 70190028 -78593444 - Tigger1 DNA MER2_type -334 2084 1837 930 179 19 0 chr11 70190272 70190434 -78593038 - MER20 DNA MER1_type 0 219 55 1059 96 0 7 chr11 70190435 70190571 -78592901 + AluSq/x SINE Alu 2 136 -176 2286 113 0 0 chr11 70190571 70190872 -78592600 + AluSx SINE Alu 1 301 -11 305 238 46 53 chr11 70190879 70190916 -78592556 + L1M4 LINE L1 2519 2555 -3591 2201 118 0 3 chr11 70190916 70191213 -78592259 + AluSq SINE Alu 1 296 -17 305 238 46 53 chr11 70191213 70191326 -78592146 + L1M4 LINE L1 2555 2668 -3478 276 163 20 0 chr11 70191326 70191375 -78592097 - AluS SINE Alu -229 73 24 449 182 11 0 chr11 70191376 70191464 -78592008 + L1M4 LINE L1 2686 2774 -3372 1156 174 32 47 chr11 70191465 70191718 -78591754 + AluJo SINE Alu 60 308 -4 636 204 28 109 chr11 70191751 70191862 -78591610 + L1M4 LINE L1 2791 2909 -3237 2017 143 10 3 chr11 70191862 70192156 -78591316 + AluJo SINE Alu 1 296 -16 636 204 28 109 chr11 70192156 70192328 -78591144 + L1M4 LINE L1 2909 3051 -3095 489 78 0 0 chr11 70192362 70192426 -78591046 - AluSp/q SINE Alu -49 254 191 544 157 0 0 chr11 70192428 70192511 -78590961 - AluS SINE Alu -228 85 3 2596 157 65 28 chr11 70192554 70192891 -78590581 + L1MB7 LINE L1 5565 5888 -295 1414 155 136 15 chr11 70192891 70193155 -78590317 + AluJo SINE Alu 1 296 -16 2596 157 65 28 chr11 70193155 70193372 -78590100 + L1MB7 LINE L1 5888 6131 -52 2033 154 0 0 chr11 70193372 70193664 -78589808 + AluJb SINE Alu 1 292 -20 2596 157 65 28 chr11 70193664 70193720 -78589752 + L1MB7 LINE L1 6131 6183 0 552 178 85 23 chr11 70193744 70193859 -78589613 + FLAM_A SINE Alu 6 132 -179 2302 85 7 0 chr11 70193859 70194163 -78589309 - AluSp SINE Alu 0 306 1 552 178 85 23 chr11 70194163 70194175 -78589297 + FLAM_A SINE Alu 132 142 -169 340 158 237 0 chr11 70194180 70194256 -78589216 + L1M4 LINE L1 3073 3166 -2980 1758 160 20 20 chr11 70194262 70194556 -78588916 + AluJo SINE Alu 1 294 -18 304 120 27 93 chr11 70195176 70195251 -78588221 - MIR SINE MIR 0 262 193 2112 115 30 3 chr11 70199617 70199913 -78583559 - AluSx SINE Alu -8 304 1 218 281 56 50 chr11 70200021 70200123 -78583349 + L2 LINE L2 1890 1995 -1319 1806 126 7 33 chr11 70200123 70200257 -78583215 - AluJb SINE Alu -49 263 138 2373 90 3 10 chr11 70200257 70200568 -78582904 - AluSc SINE Alu 0 309 1 1806 126 7 33 chr11 70200568 70200703 -78582769 - AluJb SINE Alu -174 138 1 218 281 56 50 chr11 70200703 70200760 -78582712 + L2 LINE L2 1995 2050 -1264 2231 104 3 0 chr11 70200830 70201117 -78582355 + AluSx SINE Alu 1 288 -24 222 343 0 0 chr11 70201589 70201656 -78581816 + L2 LINE L2 3133 3199 -73 297 197 47 102 chr11 70201843 70201970 -78581502 + MIR3 SINE MIR 82 201 -7 218 299 0 15 chr11 70202306 70202373 -78581099 + MIR3 SINE MIR 109 174 -34 201 243 68 0 chr11 70202579 70202653 -78580819 - L2 LINE L2 -211 3061 2983 2390 89 0 0 chr11 70203485 70203776 -78579696 + AluSx SINE Alu 1 291 -21 1061 172 0 11 chr11 70203784 70203958 -78579514 + FRAM SINE Alu 1 169 -7 2820 146 66 7 chr11 70203958 70204535 -78578937 - L1MB4 LINE L1 -8 6172 5562 1411 245 46 73 chr11 70204535 70204952 -78578520 - L1MC4 LINE L1 -266 7776 7378 2405 110 0 0 chr11 70204952 70205262 -78578210 - AluSx SINE Alu -2 310 1 1411 245 46 73 chr11 70205262 70205447 -78578025 - L1MC4 LINE L1 -664 7378 7190 180 0 0 0 chr11 70205464 70205484 -78577988 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 697 156 0 0 chr11 70205485 70205594 -78577878 - FAM SINE Alu -23 162 54 227 150 0 0 chr11 70205622 70205662 -78577810 - Alu SINE Alu -7 293 254 5984 152 53 76 chr11 70205662 70206994 -78576478 + SVA Other Other 85 1385 -1 2931 130 79 44 chr11 70207184 70207978 -78575494 - pTR5 LTR ERV1 -128 2220 119 592 213 0 25 chr11 70208112 70208234 -78575238 + MIR SINE MIR 52 170 -92 1646 104 14 5 chr11 70208873 70209093 -78574379 + AluSx SINE Alu 1 222 -90 2770 76 98 5 chr11 70209093 70209501 -78573971 - LTR8 LTR ERV1 0 691 246 2431 86 3 6 chr11 70209501 70209815 -78573657 - AluSp SINE Alu 0 313 1 1222 134 42 46 chr11 70209873 70210090 -78573382 - AluJo SINE Alu -13 299 84 1923 141 0 10 chr11 70210093 70210390 -78573082 - AluSx SINE Alu -14 298 5 228 261 217 0 chr11 70210911 70211003 -78572469 - MIR SINE MIR -131 131 20 724 335 84 14 chr11 70211061 70211239 -78572233 + L2 LINE L2 2921 3085 -228 1764 153 35 3 chr11 70211239 70211527 -78571945 - AluJo SINE Alu -15 297 1 724 335 84 14 chr11 70211527 70211715 -78571757 + L2 LINE L2 3085 3313 0 2582 57 0 3 chr11 70211978 70212277 -78571195 - AluY SINE Alu -13 298 1 2286 72 55 0 chr11 70213443 70213733 -78569739 + AluY SINE Alu 1 306 -5 2012 99 64 3 chr11 70213733 70214016 -78569456 + AluSg SINE Alu 1 300 -10 569 165 15 45 chr11 70214197 70214330 -78569142 + AluJo SINE Alu 11 139 -173 247 119 0 0 chr11 70214332 70214374 -78569098 + Alu SINE Alu 259 300 -2 900 209 0 11 chr11 70214409 70214591 -78568881 + AluJo SINE Alu 133 312 0 2354 94 0 0 chr11 70214623 70214911 -78568561 + AluSg SINE Alu 2 289 -21 1061 172 0 11 chr11 70214919 70215093 -78568379 + FRAM SINE Alu 1 169 -7 2820 146 66 7 chr11 70215093 70215670 -78567802 - L1MB4 LINE L1 -8 6172 5562 1095 231 51 10 chr11 70215670 70215982 -78567490 - L1MC4 LINE L1 -266 7776 7452 1930 148 11 3 chr11 70216111 70216395 -78567077 - AluJo SINE Alu -26 286 1 338 208 0 59 chr11 70216405 70216506 -78566966 - L1M4 LINE L1 -3261 2885 2791 1320 161 24 43 chr11 70216539 70216794 -78566678 - AluJo SINE Alu -3 309 60 449 182 11 0 chr11 70216795 70216883 -78566589 - L1M4 LINE L1 -3372 2774 2686 276 163 20 0 chr11 70216884 70216933 -78566539 + AluS SINE Alu 24 73 -229 305 238 46 53 chr11 70216933 70217046 -78566426 - L1M4 LINE L1 -3478 2668 2555 2201 118 0 3 chr11 70217046 70217343 -78566129 - AluSq SINE Alu -17 296 1 305 238 46 53 chr11 70217343 70217380 -78566092 - L1M4 LINE L1 -3591 2555 2519 2320 86 0 0 chr11 70217383 70217686 -78565786 - AluSg SINE Alu 0 303 1 1768 147 45 11 chr11 70217688 70217845 -78565627 - AluSx SINE Alu -16 296 123 2276 108 0 7 chr11 70217845 70218140 -78565332 - AluSx SINE Alu -19 293 1 1768 147 45 11 chr11 70218140 70218268 -78565204 - AluSx SINE Alu -189 123 1 180 0 0 0 chr11 70218306 70218326 -78565146 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2265 109 3 0 chr11 70218326 70218611 -78564861 - AluSx SINE Alu -26 286 1 477 182 18 64 chr11 70218628 70218738 -78564734 + AluJb SINE Alu 190 294 -18 192 40 0 0 chr11 70218738 70218763 -78564709 + (GGGGA)n Simple_repeat Simple_repeat 1 25 0 12230 123 43 24 chr11 70218769 70219012 -78564460 - Tigger2 DNA MER2_type -245 2473 2236 2702 141 103 14 chr11 70219012 70219496 -78563976 - MER1A DNA MER1_type 0 527 1 12230 123 43 24 chr11 70219496 70220205 -78563267 - Tigger2 DNA MER2_type -482 2236 1542 2214 137 0 0 chr11 70220205 70220504 -78562968 + AluSx SINE Alu 1 299 -13 12230 123 43 24 chr11 70220504 70220847 -78562625 - Tigger2 DNA MER2_type -1176 1542 1207 1915 154 0 56 chr11 70220847 70221171 -78562301 - AluJb SINE Alu -6 306 1 12230 123 43 24 chr11 70221171 70221252 -78562220 - Tigger2 DNA MER2_type -1511 1207 1129 1883 183 0 7 chr11 70221252 70221553 -78561919 - AluJb SINE Alu -13 299 1 12230 123 43 24 chr11 70221553 70222268 -78561204 - Tigger2 DNA MER2_type -1589 1129 339 1386 135 19 28 chr11 70222272 70222487 -78560985 - AluJo SINE Alu -15 297 85 666 157 0 0 chr11 70222487 70222589 -78560883 - AluJo/FRAM SINE Alu -62 250 149 361 191 0 0 chr11 70222589 70222657 -78560815 - AluJ/FLAM SINE Alu -234 68 1 1050 132 29 5 chr11 70222657 70222861 -78560611 - Tigger2 DNA MER2_type -2456 262 54 2279 115 0 10 chr11 70222862 70223174 -78560298 + AluSg1 SINE Alu 1 309 0 885 122 0 0 chr11 70224187 70224302 -78559170 - AluSq/x SINE Alu -197 115 1 496 292 49 0 chr11 70224302 70224487 -78558985 - L1MC4 LINE L1 -659 7383 7190 180 0 0 0 chr11 70224504 70224524 -78558948 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 697 156 0 0 chr11 70224525 70224634 -78558838 - FAM SINE Alu -23 162 54 2446 64 0 3 chr11 70224662 70224957 -78558515 - AluY SINE Alu -17 294 1 2177 95 3 14 chr11 70224963 70225248 -78558224 - AluSg SINE Alu -18 292 11 2193 133 3 0 chr11 70225278 70225580 -78557892 - AluSx SINE Alu -9 303 1 1346 125 58 121 chr11 70225580 70225874 -78557598 + MLT1B LTR MaLR 95 369 -21 1032 205 141 85 chr11 70225874 70226168 -78557304 - MSTD LTR MaLR 0 396 75 2312 119 0 0 chr11 70226168 70226462 -78557010 + AluSx SINE Alu 1 294 -18 1032 205 141 85 chr11 70226462 70226542 -78556930 - MSTD LTR MaLR -321 75 1 1346 125 58 121 chr11 70226542 70226560 -78556912 + MLT1B LTR MaLR 369 387 -3 247 200 0 53 chr11 70226561 70226636 -78556836 + L1MEc LINE L1 2223 2293 -4103 352 130 0 0 chr11 70227360 70227414 -78556058 - AluY SINE Alu -121 180 127 5679 117 11 18 chr11 70227439 70228148 -78555324 + MER66B-int LTR ERV1 5829 6532 -144 1936 111 23 99 chr11 70228148 70228490 -78554982 - AluYb8 SINE Alu -2 316 1 5679 117 11 18 chr11 70228490 70228634 -78554838 + MER66B-int LTR ERV1 6532 6676 0 2489 153 2 95 chr11 70228634 70228713 -78554759 + MER66B LTR ERV1 1 86 -400 2178 120 3 0 chr11 70228713 70229005 -78554467 + AluSx SINE Alu 2 294 -18 2489 153 2 95 chr11 70229005 70229349 -78554123 + MER66B LTR ERV1 86 366 -120 2254 108 0 13 chr11 70229349 70229655 -78553817 + AluSx SINE Alu 1 302 -10 2489 153 2 95 chr11 70229655 70229766 -78553706 + MER66B LTR ERV1 366 486 0 606 162 29 9 chr11 70229766 70229871 -78553601 - FLAM_C SINE Alu -35 108 2 311 336 100 19 chr11 70230001 70230322 -78553150 + L1ME LINE L1 5296 5642 -520 998 158 77 106 chr11 70230867 70231017 -78552455 + AluJo SINE Alu 1 139 -163 261 0 0 0 chr11 70231017 70231046 -78552426 + (TAA)n Simple_repeat Simple_repeat 2 30 0 998 158 77 106 chr11 70231046 70231206 -78552266 + AluJo SINE Alu 139 302 0 501 301 31 16 chr11 70231208 70231497 -78551975 + L2 LINE L2 2779 3070 -243 402 271 0 10 chr11 70231531 70231627 -78551845 + L2 LINE L2 3219 3313 0 199 245 75 66 chr11 70231617 70231723 -78551749 - MIR3 SINE MIR -95 113 7 * 1994 102 66 0 chr11 70231746 70232020 -78551452 - AluSx SINE Alu -20 292 1 245 219 20 171 chr11 70232020 70232066 -78551406 - L2 LINE L2 -529 2785 2734 2453 87 3 0 chr11 70232066 70232375 -78551097 - AluSx SINE Alu -2 310 1 245 219 20 171 chr11 70232375 70232474 -78550998 - L2 LINE L2 -580 2734 2662 248 256 70 12 chr11 70232476 70232562 -78550910 + MIR SINE MIR 91 181 -81 270 236 9 47 chr11 70232832 70232938 -78550534 + G-rich Low_complexity Low_complexity 4 105 0 234 267 122 61 chr11 70234935 70235066 -78548406 - MIR SINE MIR -76 186 48 1902 94 80 11 chr11 70235788 70236074 -78547398 - AluSx SINE Alu -6 306 1 1689 150 27 31 chr11 70236075 70236369 -78547103 - AluJo SINE Alu -17 295 3 844 169 0 28 chr11 70236373 70236515 -78546957 - AluJo SINE Alu -173 139 2 442 233 142 0 chr11 70236722 70236842 -78546630 + L2 LINE L2 3176 3312 -1 183 184 0 0 chr11 70237003 70237041 -78546431 + C-rich Low_complexity Low_complexity 6 43 0 222 222 0 62 chr11 70237354 70237435 -78546037 + G-rich Low_complexity Low_complexity 2 77 0 199 231 0 0 chr11 70237940 70237992 -78545480 - MIR SINE MIR -106 102 51 827 120 0 30 chr11 70238469 70238602 -78544870 + FLAM_C SINE Alu 1 129 -4 197 255 385 2 chr11 70238613 70238759 -78544713 - MIR SINE MIR -31 231 42 418 176 203 48 chr11 70239087 70239169 -78544303 - MER5C DNA MER1_type 0 324 256 1661 146 33 7 chr11 70239169 70239471 -78544001 + AluJb SINE Alu 1 310 -2 418 176 203 48 chr11 70239471 70239509 -78543963 - MER5C DNA MER1_type -68 256 225 2278 78 3 7 chr11 70239509 70239805 -78543667 + AluSg SINE Alu 1 295 -15 418 176 203 48 chr11 70239805 70239870 -78543602 - MER5C DNA MER1_type -99 225 109 874 132 0 0 chr11 70239967 70240103 -78543369 - AluSg/x SINE Alu -2 310 175 506 132 0 0 chr11 70240104 70240172 -78543300 - AluS SINE Alu -242 70 3 2565 157 64 27 chr11 70240215 70240552 -78542920 + L1MB7 LINE L1 5565 5888 -295 1300 155 136 15 chr11 70240552 70240816 -78542656 + AluJo SINE Alu 1 296 -16 2565 157 64 27 chr11 70240816 70241033 -78542439 + L1MB7 LINE L1 5888 6131 -52 1911 154 0 0 chr11 70241033 70241325 -78542147 + AluJb SINE Alu 1 292 -20 2565 157 64 27 chr11 70241325 70241381 -78542091 + L1MB7 LINE L1 6131 6183 0 593 186 85 23 chr11 70241406 70241521 -78541951 + FLAM_A SINE Alu 6 132 -179 2163 85 7 0 chr11 70241521 70241825 -78541647 - AluSp SINE Alu 0 306 1 593 186 85 23 chr11 70241825 70241837 -78541635 + FLAM_A SINE Alu 132 142 -169 591 211 114 24 chr11 70241842 70241924 -78541548 + L1 LINE L1 3073 3146 -3000 1709 160 20 17 chr11 70241924 70242224 -78541248 + AluJo SINE Alu 1 301 -11 462 36 0 0 chr11 70242225 70242281 -78541191 + (CA)n Simple_repeat Simple_repeat 2 57 0 591 211 114 24 chr11 70242281 70242370 -78541102 + L1 LINE L1 3146 3226 -2920 1986 130 14 3 chr11 70242370 70242662 -78540810 + AluSx SINE Alu 1 295 -17 591 211 114 24 chr11 70242662 70242785 -78540687 + L1 LINE L1 3226 3397 -2749 1548 178 31 7 chr11 70242809 70243096 -78540376 - AluJb SINE Alu -18 294 1 598 197 69 20 chr11 70243106 70243303 -78540169 + L1 LINE L1 4256 4463 -1678 742 187 0 50 chr11 70243303 70243442 -78540030 + FLAM_C SINE Alu 1 132 -1 489 216 106 92 chr11 70243469 70243600 -78539872 + L1M4 LINE L1 4716 4853 -1293 2318 74 0 7 chr11 70243600 70243899 -78539573 - AluY SINE Alu -14 297 1 489 216 106 92 chr11 70243899 70243985 -78539487 + L1M4 LINE L1 4853 4936 -1210 434 173 64 82 chr11 70243985 70244023 -78539449 + L1ME LINE L1 3194 3231 -2915 2042 108 4 0 chr11 70244023 70244349 -78539123 + AluSg SINE Alu 1 327 0 434 173 64 82 chr11 70244349 70244417 -78539055 + L1ME LINE L1 3231 3301 -2845 569 155 77 72 chr11 70244420 70244585 -78538887 + L1ME LINE L1 4987 5150 -996 1957 128 0 4 chr11 70244585 70244866 -78538606 + AluSq SINE Alu 1 280 -33 252 59 0 0 chr11 70244866 70244900 -78538572 + (CA)n Simple_repeat Simple_repeat 1 34 0 569 155 77 72 chr11 70244900 70244940 -78538532 + L1ME LINE L1 5149 5194 -952 * 2878 124 72 8 chr11 70244933 70244947 -78538525 + L1 LINE L1 4627 4639 -1507 2101 103 0 17 chr11 70244947 70245248 -78538224 + AluSx SINE Alu 1 296 -16 2878 124 72 8 chr11 70245248 70245759 -78537713 + L1 LINE L1 4639 5186 -960 976 196 0 0 chr11 70245767 70245925 -78537547 + FRAM SINE Alu 1 158 -8 1025 224 8 16 chr11 70245925 70246171 -78537301 + L1ME LINE L1 5552 5795 -371 198 0 0 0 chr11 70246171 70246193 -78537279 + (T)n Simple_repeat Simple_repeat 1 22 0 199 231 0 0 chr11 70246501 70246553 -78536919 - MIR SINE MIR -106 102 51 965 96 0 22 chr11 70247030 70247166 -78536306 + FLAM_C SINE Alu 1 133 0 210 241 422 0 chr11 70247172 70247288 -78536184 - MIR SINE MIR -31 231 67 349 165 223 50 chr11 70247646 70247728 -78535744 - MER5C DNA MER1_type 0 324 258 1661 146 33 7 chr11 70247728 70248030 -78535442 + AluJb SINE Alu 1 310 -2 349 165 223 50 chr11 70248030 70248068 -78535404 - MER5C DNA MER1_type -66 258 183 2152 86 10 7 chr11 70248068 70248360 -78535112 + AluSg SINE Alu 1 293 -17 280 361 119 15 chr11 70248520 70248789 -78534683 - L2 LINE L2 -10 3262 2966 1023 209 9 24 chr11 70248873 70249083 -78534389 - MER6B DNA MER2_type -3 207 1 2313 84 0 0 chr11 70249254 70249551 -78533921 + AluSx SINE Alu 1 297 -15 301 294 36 0 chr11 70249956 70250088 -78533384 - MIR SINE MIR -35 173 31 * 643 251 218 33 chr11 70250086 70250416 -78533056 - L2 LINE L2 -2 3311 2921 1254 143 83 145 chr11 70250477 70250863 -78532609 + LTR1 LTR ERV1 12 373 -412 1955 98 0 0 chr11 70250863 70251119 -78532353 + AluSx SINE Alu 47 302 -10 1353 115 32 9 chr11 70251225 70251442 -78532030 - AluSg/x SINE Alu -20 292 71 801 179 62 80 chr11 70251548 70251822 -78531650 + MER58B DNA MER1_type 72 340 -1 262 301 97 26 chr11 70251862 70252088 -78531384 - L1MEc LINE L1 -4923 1684 1256 1633 143 45 21 chr11 70252100 70252386 -78531086 - AluJo SINE Alu -19 293 1 299 242 188 24 chr11 70253026 70253232 -78530240 + MIR SINE MIR 20 262 0 255 139 0 0 chr11 70253247 70253290 -78530182 - MIR SINE MIR -62 146 104 216 167 0 0 chr11 70254265 70254301 -78529171 + (CAGCC)n Simple_repeat Simple_repeat 1 36 0 193 355 0 0 chr11 70254538 70254600 -78528872 - MIR SINE MIR -113 95 34 479 363 103 10 chr11 70255881 70256173 -78527299 - L2 LINE L2 -7 3306 2988 1985 116 14 0 chr11 70257008 70257300 -78526172 + AluSx SINE Alu 1 296 -16 288 357 119 15 chr11 70257460 70257729 -78525743 - L2 LINE L2 -10 3262 2966 1023 209 9 24 chr11 70257813 70258023 -78525449 - MER6B DNA MER2_type -3 207 1 2313 84 0 0 chr11 70258194 70258491 -78524981 + AluSx SINE Alu 1 297 -15 301 294 36 0 chr11 70258896 70259028 -78524444 - MIR SINE MIR -35 173 31 * 643 251 218 33 chr11 70259026 70259356 -78524116 - L2 LINE L2 -2 3311 2921 1250 146 83 143 chr11 70259417 70259802 -78523670 + LTR1 LTR ERV1 12 373 -412 1940 98 0 0 chr11 70259802 70260056 -78523416 + AluSx SINE Alu 47 300 -12 1321 132 70 18 chr11 70260056 70260284 -78523188 + AluSq SINE Alu 74 313 0 2173 88 65 24 chr11 70260284 70260625 -78522847 + LTR1 LTR ERV1 431 785 0 1125 268 218 18 chr11 70260627 70261284 -78522188 - L2 LINE L2 -396 2918 2131 373 256 157 0 chr11 70261346 70261467 -78522005 + MIR SINE MIR 120 259 -3 201 307 27 0 chr11 70262093 70262168 -78521304 + MIR3 SINE MIR 107 183 -25 1013 118 37 6 chr11 70263277 70263438 -78520034 + FRAM SINE Alu 1 166 0 2449 57 0 0 chr11 70263487 70263786 -78519686 - AluY SINE Alu -12 299 1 1695 160 3 36 chr11 70263858 70264165 -78519307 + AluJb SINE Alu 1 297 -15 1743 131 3 76 chr11 70264169 70264277 -78519195 + L1MB2 LINE L1 5865 5979 -192 2347 77 0 0 chr11 70264277 70264574 -78518898 + AluSx SINE Alu 1 297 -15 1743 131 3 76 chr11 70264574 70264794 -78518678 + L1MB2 LINE L1 5979 6169 -2 2336 87 0 0 chr11 70264804 70265104 -78518368 + AluSq SINE Alu 2 301 -12 2252 69 7 3 chr11 70265120 70265410 -78518062 + AluSc SINE Alu 6 296 -13 822 268 86 89 chr11 70265420 70265754 -78517718 + L1M4 LINE L1 3777 4111 -2035 1606 138 18 28 chr11 70265754 70266036 -78517436 + AluJo SINE Alu 21 299 -13 822 268 86 89 chr11 70266036 70266175 -78517297 + L1M4 LINE L1 4111 4249 -1897 1661 172 20 7 chr11 70266175 70266471 -78517001 + AluJo SINE Alu 1 300 -12 822 268 86 89 chr11 70266471 70266520 -78516952 + L1M4 LINE L1 4249 4297 -1849 2243 91 0 7 chr11 70266520 70266829 -78516643 + AluSq SINE Alu 1 307 -6 822 268 86 89 chr11 70266829 70266886 -78516586 + L1M4 LINE L1 4297 4353 -1793 2025 123 14 0 chr11 70266886 70267178 -78516294 + AluSx SINE Alu 1 296 -16 822 268 86 89 chr11 70267178 70267268 -78516204 + L1M4 LINE L1 4353 4442 -1704 2268 95 3 0 chr11 70267268 70267572 -78515900 - AluSx SINE Alu -7 305 1 822 268 86 89 chr11 70267572 70267726 -78515746 + L1M4 LINE L1 4442 4603 -1543 5563 26 2 0 chr11 70267726 70268350 -78515122 + SVA Other Other 762 1386 0 822 268 86 89 chr11 70268350 70268456 -78515016 + L1M4 LINE L1 4603 4708 -1438 4304 141 81 42 chr11 70268540 70269879 -78513593 - pTR5 LTR ERV1 -128 2220 119 916 113 15 0 chr11 70269991 70270124 -78513348 + AluSq/x SINE Alu 1 135 -177 2382 49 0 0 chr11 70270124 70270412 -78513060 + AluY SINE Alu 1 288 -23 269 88 44 15 chr11 70270412 70270480 -78512992 + (TTATA)n Simple_repeat Simple_repeat 5 74 0 838 179 62 80 chr11 70270797 70271071 -78512401 + MER58B DNA MER1_type 72 340 -1 247 276 33 46 chr11 70271112 70271334 -78512138 - L1MEd LINE L1 -4918 1201 1130 1351 160 53 28 chr11 70271349 70271631 -78511841 - AluJo SINE Alu -19 293 5 2208 84 0 42 chr11 70271669 70271812 -78511660 + AluSc SINE Alu 1 148 -161 270 0 0 0 chr11 70271812 70271842 -78511630 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 2208 84 0 42 chr11 70271842 70272009 -78511463 + AluSc SINE Alu 148 298 -11 754 215 110 4 chr11 70272011 70272239 -78511233 + L1MC4 LINE L1 7791 8042 0 273 333 42 24 chr11 70272270 70272435 -78511037 - L2 LINE L2 -294 2978 2811 836 51 17 8 chr11 70272470 70272588 -78510884 + AluY SINE Alu 190 308 -3 1944 103 0 0 chr11 70272599 70272851 -78510621 + AluSg SINE Alu 1 252 -58 384 287 92 35 chr11 70276556 70276730 -78506742 + L2 LINE L2 3121 3304 -9 2208 99 0 16 chr11 70276730 70277034 -78506438 + AluSx SINE Alu 1 299 -13 2008 125 6 3 chr11 70277487 70277798 -78505674 + AluSx SINE Alu 1 312 0 481 219 60 13 chr11 70277920 70278071 -78505401 - MIR SINE MIR -21 241 84 240 179 36 18 chr11 70278205 70278261 -78505211 - MIR3 SINE MIR -29 179 123 219 153 85 17 chr11 70278304 70278363 -78505109 - MIR3 SINE MIR -31 177 115 353 272 79 83 chr11 70278536 70278764 -78504708 + L1ME4a LINE L1 5891 6117 -4 437 246 128 37 chr11 70278822 70279009 -78504463 - MIR SINE MIR 0 262 59 2242 115 0 0 chr11 70279400 70279713 -78503759 - AluSq SINE Alu 0 313 1 1481 216 7 7 chr11 70279789 70280094 -78503378 - AluJb SINE Alu -7 305 1 1995 130 0 3 chr11 70280255 70280548 -78502924 + AluSg SINE Alu 1 292 -18 2395 60 0 3 chr11 70280672 70280970 -78502502 - AluY SINE Alu -14 297 1 2227 64 24 10 chr11 70281430 70281727 -78501745 + AluY SINE Alu 3 303 -8 1444 193 45 3 chr11 70281751 70282041 -78501431 + AluSx SINE Alu 1 302 -10 2011 122 0 7 chr11 70282080 70282368 -78501104 - AluSx SINE Alu -26 286 1 3279 195 35 19 chr11 70282404 70282751 -78500721 - L1MB5 LINE L1 0 6219 5879 2334 92 0 0 chr11 70282751 70283057 -78500415 - AluY SINE Alu -5 306 1 3279 195 35 19 chr11 70283057 70283631 -78499841 - L1MB5 LINE L1 -340 5879 5295 683 142 0 35 chr11 70283769 70283882 -78499590 - AluJ SINE Alu -87 225 117 816 182 0 0 chr11 70283915 70284048 -78499424 - AluJ SINE Alu -179 133 2 231 246 204 100 chr11 70284258 70284418 -78499054 - MIR SINE MIR -18 244 102 1918 139 7 7 chr11 70284418 70284719 -78498753 + AluSx SINE Alu 4 304 -8 1995 116 7 7 chr11 70284721 70285022 -78498450 + AluSx SINE Alu 1 301 -11 231 246 204 100 chr11 70285022 70285078 -78498394 - MIR SINE MIR -160 102 2 342 280 220 0 chr11 70285375 70285589 -78497883 + MIR SINE MIR 2 262 0 1779 157 0 33 chr11 70286008 70286314 -78497158 + AluJb SINE Alu 1 296 -16 43 0 0 0 chr11 70286467 70286510 -78496962 + AT_rich Low_complexity Low_complexity 1 43 0 920 134 0 0 chr11 70286510 70286637 -78496835 - FLAM_C SINE Alu -4 129 3 2151 100 10 7 chr11 70286755 70287056 -78496416 + AluSx SINE Alu 1 302 -10 362 222 0 0 chr11 70287065 70287128 -78496344 + AluJ/FLAM SINE Alu 1 63 -239 2013 142 10 0 chr11 70287272 70287574 -78495898 - AluSx SINE Alu -7 305 1 237 293 123 0 chr11 70287704 70287810 -78495662 - MIR SINE MIR -1 261 143 205 192 0 19 chr11 70287860 70287912 -78495560 - MIR SINE MIR -102 160 110 712 105 0 0 chr11 70289699 70289794 -78493678 + AluJ/FLAM SINE Alu 1 95 -217 288 158 0 0 chr11 70290423 70290480 -78492992 + GA-rich Low_complexity Low_complexity 1 57 0 190 311 14 27 chr11 70290993 70291067 -78492405 - MIR SINE MIR -11 251 179 655 215 68 18 chr11 70291398 70291561 -78491911 + MER5A DNA MER1_type 14 184 -5 215 314 86 9 chr11 70294364 70294469 -78489003 - MIR SINE MIR -56 206 94 27 0 0 0 chr11 70297433 70297460 -78486012 + AT_rich Low_complexity Low_complexity 1 27 0 2224 83 7 3 chr11 70298129 70298429 -78485043 - AluY SINE Alu -8 303 3 700 226 77 0 chr11 70298429 70298637 -78484835 - L1M4 LINE L1 -3388 2758 2535 465 273 95 33 chr11 70298656 70298960 -78484512 - L1MC5 LINE L1 -30 7931 7609 315 295 82 0 chr11 70300288 70300410 -78483062 + L2 LINE L2 3138 3269 -3 188 171 49 0 chr11 70300658 70300699 -78482773 - MIR SINE MIR -197 65 23 269 210 0 32 chr11 70302648 70302710 -78480762 + MIR SINE MIR 89 148 -60 284 269 202 19 chr11 70304519 70304623 -78478849 + MIR SINE MIR 30 152 -56 960 112 13 7 chr11 70304623 70304775 -78478697 + AluSx SINE Alu 1 153 -159 2219 43 46 4 chr11 70304795 70305076 -78478396 - AluY SINE Alu -18 293 1 306 248 92 18 chr11 70305128 70305237 -78478235 + L1MC/D LINE L1 5732 5848 -1960 2457 153 61 43 chr11 70305238 70305325 -78478147 - MER21A LTR ERV1 -6 925 841 2125 108 0 20 chr11 70305325 70305630 -78477842 + AluSq SINE Alu 1 299 -14 2457 153 61 43 chr11 70305630 70306342 -78477130 - MER21A LTR ERV1 -90 841 2 2181 134 0 0 chr11 70306624 70306931 -78476541 - AluSx SINE Alu -5 307 1 1005 83 0 8 chr11 70306955 70307087 -78476385 - AluJb SINE Alu -180 132 2 760 119 63 16 chr11 70307542 70307668 -78475804 + AluSc SINE Alu 118 249 -60 316 274 171 27 chr11 70307679 70307825 -78475647 - MIR3 SINE MIR -1 207 41 1905 149 3 17 chr11 70308065 70308366 -78475106 + AluJb SINE Alu 1 297 -15 948 173 0 0 chr11 70308393 70308543 -78474929 + FRAM SINE Alu 16 165 -11 203 229 0 0 chr11 70309927 70309962 -78473510 + C-rich Low_complexity Low_complexity 85 119 0 199 239 134 0 chr11 70312472 70312539 -78470933 + MIR SINE MIR 61 136 -72 1076 113 0 6 chr11 70312786 70312946 -78470526 - AluJb SINE Alu 0 312 154 245 289 39 29 chr11 70314416 70314520 -78468952 - MIR SINE MIR -60 148 44 1703 179 0 7 chr11 70315114 70315416 -78468056 - AluJo SINE Alu -11 301 2 2511 57 0 0 chr11 70315426 70315727 -78467745 - AluY SINE Alu -10 301 1 392 318 31 0 chr11 70316062 70316191 -78467281 - L3 LINE CR1 -167 1410 1278 2422 65 0 7 chr11 70316247 70316556 -78466916 + AluY SINE Alu 1 307 -4 361 212 127 25 chr11 70317010 70317128 -78466344 - MER5A DNA MER1_type -1 188 59 2119 100 0 17 chr11 70318012 70318313 -78465159 - AluSx SINE Alu -16 296 1 271 233 33 0 chr11 70318316 70318376 -78465096 + MIR SINE MIR 46 107 -155 483 301 108 5 chr11 70319154 70319340 -78464132 + MIR SINE MIR 47 251 -11 481 265 195 5 chr11 70322343 70322543 -78460929 - L3 LINE CR1 -38 1539 1302 326 257 97 26 chr11 70324666 70324809 -78458663 - MIR SINE MIR -63 145 39 230 236 0 0 chr11 70325807 70325862 -78457610 + MIR SINE MIR 50 104 -104 1099 218 186 9 chr11 70325887 70326236 -78457236 + L1MB5 LINE L1 5758 6168 -6 231 88 0 0 chr11 70328285 70328319 -78455153 + (A)n Simple_repeat Simple_repeat 1 34 0 180 0 0 0 chr11 70328458 70328478 -78454994 + (C)n Simple_repeat Simple_repeat 1 20 0 231 36 0 0 chr11 70328505 70328533 -78454939 + (A)n Simple_repeat Simple_repeat 1 28 0 275 333 124 30 chr11 70328751 70328904 -78454568 - L2 LINE L2 -19 3294 3157 727 209 8 0 chr11 70328904 70329033 -78454439 + FLAM_A SINE Alu 1 130 -3 275 333 124 30 chr11 70329033 70329209 -78454263 - L2 LINE L2 -156 3157 2934 2014 117 13 3 chr11 70330359 70330657 -78452815 + AluSx SINE Alu 1 301 -11 277 319 44 11 chr11 70330671 70330740 -78452732 - MIR SINE MIR -41 221 156 1671 164 19 51 chr11 70330740 70330910 -78452562 - AluJo SINE Alu 0 302 145 2204 91 0 13 chr11 70330910 70331089 -78452383 - AluSp SINE Alu -1 312 137 2493 54 0 0 chr11 70331089 70331385 -78452087 - AluY SINE Alu -15 296 1 2204 91 0 13 chr11 70331385 70331512 -78451960 - AluSp SINE Alu -176 137 10 1671 164 19 51 chr11 70331512 70331653 -78451819 - AluJo SINE Alu -157 145 1 277 319 44 11 chr11 70331653 70331674 -78451798 - MIR SINE MIR -106 156 128 2298 103 3 0 chr11 70333520 70333832 -78449640 + AluSp SINE Alu 1 313 0 2159 91 10 7 chr11 70333846 70334144 -78449328 + AluSc SINE Alu 3 301 -8 198 0 0 0 chr11 70334317 70334339 -78449133 + (A)n Simple_repeat Simple_repeat 1 22 0 189 270 52 61 chr11 70335366 70335481 -78447991 + MIR SINE MIR 13 126 -136 1297 116 39 52 chr11 70335515 70335667 -78447805 - MER30 DNA MER1_type 0 230 81 2237 88 0 24 chr11 70335667 70335984 -78447488 - AluSg SINE Alu 0 310 1 1297 116 39 52 chr11 70335984 70336064 -78447408 - MER30 DNA MER1_type -149 81 1 183 234 0 21 chr11 70336077 70336124 -78447348 + L2 LINE L2 3215 3260 -12 * 435 231 199 6 chr11 70336112 70336268 -78447204 - MIR SINE MIR -19 243 58 21 0 0 31 chr11 70336618 70336634 -78446838 + AT_rich Low_complexity Low_complexity 1 16 -15 1794 168 17 3 chr11 70336634 70336925 -78446547 - AluJb SINE Alu -17 295 1 21 0 0 31 chr11 70336925 70336940 -78446532 + AT_rich Low_complexity Low_complexity 16 31 0 225 0 0 0 chr11 70337024 70337049 -78446423 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 1878 158 7 10 chr11 70337084 70337382 -78446090 - AluJb SINE Alu -11 301 5 632 215 13 13 chr11 70337584 70337740 -78445732 - MER105 DNA DNA -3 201 46 1018 198 97 4 chr11 70337740 70337988 -78445484 - MER58B DNA MER1_type 0 341 71 446 176 28 74 chr11 70337982 70338090 -78445382 + U13 snRNA snRNA 1 103 -1 * 282 268 101 50 chr11 70338287 70338485 -78444987 + L1MC4 LINE L1 7835 8042 0 1159 196 132 19 chr11 70338765 70339030 -78444442 + AluJo SINE Alu 4 298 -4 1808 144 12 0 chr11 70339228 70339484 -78443988 - AluSx SINE Alu -53 259 1 230 293 123 0 chr11 70339614 70339720 -78443752 - MIR SINE MIR -1 261 143 202 192 0 19 chr11 70339770 70339822 -78443650 - MIR SINE MIR -102 160 110 672 106 0 0 chr11 70341610 70341704 -78441768 + AluJ/FLAM SINE Alu 2 95 -217 288 158 0 0 chr11 70342333 70342390 -78441082 + GA-rich Low_complexity Low_complexity 1 57 0 638 215 68 18 chr11 70343308 70343471 -78440001 + MER5A DNA MER1_type 14 184 -5 181 292 94 10 chr11 70346283 70346379 -78437093 - MIR SINE MIR -65 197 94 27 0 0 0 chr11 70349343 70349370 -78434102 + AT_rich Low_complexity Low_complexity 1 27 0 2209 114 17 0 chr11 70350039 70350212 -78433260 - AluSx SINE Alu -8 304 122 207 0 0 0 chr11 70350212 70350235 -78433237 + (TG)n Simple_repeat Simple_repeat 2 24 0 2209 114 17 0 chr11 70350235 70350360 -78433112 - AluSx SINE Alu -190 122 1 236 326 173 33 chr11 70350953 70351132 -78432340 + L2 LINE L2 2514 2667 -647 2456 78 0 3 chr11 70351132 70351425 -78432047 + AluSx SINE Alu 1 292 -20 236 326 173 33 chr11 70351425 70351644 -78431828 + L2 LINE L2 2667 2968 -346 1286 221 13 17 chr11 70351708 70351837 -78431635 + AluSx SINE Alu 1 129 -183 2402 93 0 0 chr11 70351837 70352138 -78431334 + AluSx SINE Alu 1 301 -11 1286 221 13 17 chr11 70352138 70352306 -78431166 + AluSx SINE Alu 129 297 -15 354 45 0 0 chr11 70352306 70352350 -78431122 + (GA)n Simple_repeat Simple_repeat 1 44 0 2155 126 13 3 chr11 70352391 70352701 -78430771 + AluSq SINE Alu 1 313 0 2368 103 0 0 chr11 70352814 70353115 -78430357 + AluSg SINE Alu 1 301 -9 180 0 0 0 chr11 70353221 70353241 -78430231 + (A)n Simple_repeat Simple_repeat 1 20 0 3116 160 2 0 chr11 70353432 70353926 -78429546 - MER41D LTR ERV1 0 557 63 2360 86 0 43 chr11 70353937 70354262 -78429210 - AluY SINE Alu 0 311 1 312 206 55 0 chr11 70354272 70354345 -78429127 - MER4D LTR ERV1 -785 87 11 1591 203 55 33 chr11 70354363 70354410 -78429062 - MER4D-int LTR ERV1 -3 6755 6711 2327 119 0 0 chr11 70354410 70354720 -78428752 - AluSx SINE Alu -2 310 1 1591 203 55 33 chr11 70354720 70355036 -78428436 - MER4D-int LTR ERV1 -47 6711 6384 1163 133 0 0 chr11 70355074 70355240 -78428232 + AluSp SINE Alu 146 311 -2 411 75 0 0 chr11 70355241 70355294 -78428178 - MER66-int LTR ERV1 -1913 4763 4711 426 156 56 0 chr11 70355343 70355433 -78428039 + AluSp/q SINE Alu 219 313 0 331 143 0 0 chr11 70355434 70355483 -78427989 - MER4-int LTR ERV1 -1915 4761 4713 513 144 168 0 chr11 70355489 70355592 -78427880 - MER4-int LTR ERV1 -2314 4284 3950 921 118 0 22 chr11 70355654 70355790 -78427682 - FLAM_C SINE Alu -10 133 1 706 177 28 99 chr11 70355938 70356119 -78427353 - MER4-int LTR ERV1 -4167 3953 3786 483 141 42 33 chr11 70356250 70356389 -78427083 - MER4-int LTR ERV1 -1890 4708 4042 2420 100 0 6 chr11 70356400 70356711 -78426761 + AluSp SINE Alu 1 309 -4 2482 160 16 120 chr11 70356726 70357084 -78426388 + MER110-int LTR ERV1 4167 4400 -3720 1821 157 3 20 chr11 70357084 70357383 -78426089 - AluSq SINE Alu -19 294 1 2482 160 16 120 chr11 70357383 70357816 -78425656 + MER110-int LTR ERV1 4400 4876 -3244 3338 142 48 63 chr11 70357818 70358103 -78425369 + LTR1 LTR ERV1 1 289 -496 2812 88 41 56 chr11 70358103 70358568 -78424904 - LTR22A LTR ERVK 0 458 1 3338 142 48 63 chr11 70358568 70359121 -78424351 + LTR1 LTR ERV1 289 785 0 290 313 26 82 chr11 70359242 70359388 -78424084 + MER110-int LTR ERV1 2291 2425 -2222 2341 78 10 3 chr11 70359388 70359682 -78423790 - AluSq SINE Alu -17 296 1 290 313 26 82 chr11 70359682 70359730 -78423742 + MER110-int LTR ERV1 2425 2474 -2173 23 0 0 0 chr11 70359885 70359908 -78423564 + AT_rich Low_complexity Low_complexity 1 23 0 2162 89 10 43 chr11 70360384 70360687 -78422785 - AluSq SINE Alu -20 293 1 1761 182 0 3 chr11 70360887 70361194 -78422278 - AluSp SINE Alu -7 306 1 1740 176 0 36 chr11 70361205 70361512 -78421960 - AluJo SINE Alu -16 296 1 1033 96 81 35 chr11 70361512 70361710 -78421762 + L1MC3 LINE L1 6716 6922 -863 351 78 0 0 chr11 70361710 70361761 -78421711 + (TCTA)n Simple_repeat Simple_repeat 3 53 0 319 58 19 39 chr11 70361769 70361821 -78421651 + MLT2C1 LTR ERVL 347 397 0 393 176 0 0 chr11 70361821 70361889 -78421583 + L1MC3 LINE L1 7683 7750 -35 1593 142 7 73 chr11 70361896 70362226 -78421246 - AluSx SINE Alu 0 310 1 340 237 104 22 chr11 70362227 70362362 -78421110 + Charlie8 DNA MER1_type 145 290 -2127 229 220 20 0 chr11 70362357 70362407 -78421065 - AluJb SINE Alu -70 232 182 * 203 385 31 0 chr11 70363226 70363356 -78420116 - L2 LINE L2 -526 2788 2655 1541 142 101 19 chr11 70363429 70363696 -78419776 - AluJo SINE Alu -23 289 1 921 206 142 85 chr11 70363704 70364106 -78419366 + MSTC LTR MaLR 4 428 0 409 318 100 22 chr11 70364217 70364538 -78418934 - LTR16B LTR ERVL -93 357 12 350 349 84 5 chr11 70365483 70365698 -78417774 + MIR SINE MIR 3 234 -28 2289 104 13 3 chr11 70366357 70366666 -78416806 + AluSx SINE Alu 1 312 0 400 211 94 55 chr11 70366723 70366851 -78416621 + MIR SINE MIR 49 181 -81 180 275 122 23 chr11 70367169 70367300 -78416172 + L2 LINE L2 2817 2960 -312 * 450 173 0 12 chr11 70367295 70367376 -78416096 - L2 LINE L2 0 3313 3234 354 270 43 0 chr11 70367573 70367688 -78415784 + L2 LINE L2 3153 3272 0 206 234 0 0 chr11 70367906 70367936 -78415536 + A-rich Low_complexity Low_complexity 1 33 -14 354 70 0 0 chr11 70367936 70367993 -78415479 + L1MB2 LINE L1 6115 6171 0 206 234 0 0 chr11 70367993 70368009 -78415463 + A-rich Low_complexity Low_complexity 32 47 0 1795 156 11 7 chr11 70368016 70368299 -78415173 + AluJb SINE Alu 1 284 -28 2285 102 3 0 chr11 70368329 70368624 -78414848 - AluSx SINE Alu -16 296 1 273 213 73 73 chr11 70368662 70368812 -78414660 + MLT1H LTR MaLR 400 549 0 456 230 29 43 chr11 70368874 70369013 -78414459 + L1ME3 LINE L1 6025 6161 -1 1982 134 0 11 chr11 70369104 70369412 -78414060 - AluSx SINE Alu 0 305 1 2371 105 0 6 chr11 70369490 70369803 -78413669 + AluSx SINE Alu 1 311 -1 2409 109 0 0 chr11 70370108 70370420 -78413052 - AluSx SINE Alu 0 312 1 354 185 0 0 chr11 70370452 70370517 -78412955 - MIR SINE MIR -12 250 186 2032 198 137 14 chr11 70370874 70371313 -78412159 - MLT1F1 LTR MaLR 0 567 57 1836 144 0 51 chr11 70371313 70371625 -78411847 - AluJb SINE Alu -13 299 4 2032 198 137 14 chr11 70371625 70371690 -78411782 - MLT1F1 LTR MaLR -510 57 1 330 26 0 0 chr11 70371813 70371852 -78411620 + (TC)n Simple_repeat Simple_repeat 1 39 0 * 387 0 0 0 chr11 70371851 70371894 -78411578 + (CA)n Simple_repeat Simple_repeat 1 43 0 311 289 70 23 chr11 70372027 70372155 -78411317 - MLT1K LTR MaLR -331 257 124 2212 99 3 26 chr11 70372998 70373300 -78410172 - AluSx SINE Alu -17 295 1 196 156 37 0 chr11 70373375 70373418 -78410054 + MIR SINE MIR 103 147 -61 1742 190 0 23 chr11 70373516 70373821 -78409651 + AluJb SINE Alu 7 304 -8 232 180 62 28 chr11 70373822 70373907 -78409565 - MIR SINE MIR -87 121 28 798 224 13 56 chr11 70374622 70374767 -78408705 + MIR SINE MIR 5 138 -124 2193 124 10 0 chr11 70374767 70375073 -78408399 + AluSx SINE Alu 1 309 -3 798 224 13 56 chr11 70375073 70375159 -78408313 + MIR SINE MIR 138 226 -36 2218 117 7 0 chr11 70375500 70375791 -78407681 + AluSx SINE Alu 8 300 -12 873 185 7 0 chr11 70375793 70375944 -78407528 - FRAM SINE Alu -14 152 1 302 279 82 16 chr11 70376613 70376735 -78406737 + MIR3 SINE MIR 71 200 -8 3062 117 47 125 chr11 70377204 70377300 -78406172 - MER51A LTR ERV1 -9 625 523 2331 93 0 56 chr11 70377300 70377622 -78405850 - AluSx SINE Alu -8 304 1 3062 117 47 125 chr11 70377622 70378203 -78405269 - MER51A LTR ERV1 -111 523 1 1521 55 6 6 chr11 70378732 70378915 -78404557 + AluY SINE Alu 117 299 -12 446 257 48 62 chr11 70379119 70379162 -78404310 + L1ME LINE L1 5375 5417 -747 2235 123 0 0 chr11 70379162 70379455 -78404017 - AluSx SINE Alu -19 293 1 446 257 48 62 chr11 70379455 70379521 -78403951 + L1ME LINE L1 5417 5482 -682 2294 86 0 0 chr11 70379521 70379837 -78403635 + AluSg1 SINE Alu 1 316 0 446 257 48 62 chr11 70379837 70379935 -78403537 + L1ME LINE L1 5482 5581 -583 1931 171 6 31 chr11 70379964 70380321 -78403151 + MLT2D LTR ERVL 2 349 -65 253 102 34 34 chr11 70380329 70380388 -78403084 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 296 159 74 0 chr11 70380390 70380450 -78403022 + MLT2D LTR ERVL 358 414 0 261 61 0 0 chr11 70380514 70380547 -78402925 + L1M1 LINE L1 5690 5722 -583 21 36 0 0 chr11 70380550 70380578 -78402894 + AT_rich Low_complexity Low_complexity 1 28 0 2295 115 3 0 chr11 70380578 70380882 -78402590 + AluSx SINE Alu 1 305 -7 955 0 42 0 chr11 70380998 70381118 -78402354 + (TTTTA)n Simple_repeat Simple_repeat 5 129 0 2115 83 22 11 chr11 70381118 70381395 -78402077 - AluSx SINE Alu -32 280 1 2255 107 17 6 chr11 70381396 70381750 -78401722 - L1PA11 LINE L1 -10 6164 5807 2352 95 3 0 chr11 70382003 70382360 -78401112 + L1PA14 LINE L1 5804 6161 0 4073 153 56 41 chr11 70382397 70383362 -78400110 - MER11C LTR ERVK 0 1071 1 951 129 0 29 chr11 70383380 70383519 -78399953 - AluJb SINE Alu -92 220 86 2313 111 4 0 chr11 70384216 70384526 -78398946 + AluSx SINE Alu 1 309 -3 450 267 117 0 chr11 70384819 70385007 -78398465 + MIR SINE MIR 23 237 -25 345 280 0 0 chr11 70385314 70385549 -78397923 + (TGGA)n Simple_repeat Simple_repeat 1 235 0 297 248 7 20 chr11 70385588 70385741 -78397731 + (TGGA)n Simple_repeat Simple_repeat 4 154 0 191 227 0 23 chr11 70385768 70385856 -78397616 + (TGGA)n Simple_repeat Simple_repeat 3 88 0 267 31 0 0 chr11 70385871 70385903 -78397569 + (TG)n Simple_repeat Simple_repeat 2 33 0 1543 182 7 25 chr11 70385903 70386189 -78397283 - AluJo SINE Alu -27 285 5 1140 195 64 0 chr11 70386440 70386676 -78396796 + L1MB7 LINE L1 5422 5672 -512 302 169 0 3 chr11 70386699 70386924 -78396548 + AluJo SINE Alu 13 300 -2 2613 128 55 59 chr11 70386937 70387043 -78396429 + L1MB7 LINE L1 5667 5772 -412 2170 108 10 0 chr11 70387043 70387348 -78396124 + AluSx SINE Alu 3 310 -2 2613 128 55 59 chr11 70387348 70387751 -78395721 + L1MB7 LINE L1 5772 6174 -10 1815 154 0 13 chr11 70387753 70388052 -78395420 + AluJo SINE Alu 1 295 -17 294 255 51 10 chr11 70388387 70388485 -78394987 + MIR SINE MIR 111 212 -50 674 240 177 10 chr11 70388943 70389231 -78394241 - MER34B LTR ERV1 0 565 230 328 122 0 0 chr11 70389513 70389562 -78393910 + MER41D LTR ERV1 14 62 -495 2067 107 10 0 chr11 70389566 70389856 -78393616 - AluSx SINE Alu -13 299 7 611 141 10 10 chr11 70389862 70389961 -78393511 - FLAM_C SINE Alu -10 133 35 322 136 0 0 chr11 70389983 70390027 -78393445 + Alu SINE Alu 1 44 -255 * 627 146 0 24 chr11 70390026 70390149 -78393323 + MER41D LTR ERV1 222 341 -216 902 269 101 45 chr11 70390876 70391322 -78392150 + L2 LINE L2 2842 3312 -1 194 208 42 21 chr11 70392562 70392610 -78390862 + MIR3 SINE MIR 144 192 -16 258 344 24 16 chr11 70392925 70393050 -78390422 + MIR3 SINE MIR 35 160 -48 341 282 19 0 chr11 70393095 70393198 -78390274 - MIR SINE MIR -48 214 110 389 20 20 0 chr11 70394645 70394695 -78388777 + (TGGA)n Simple_repeat Simple_repeat 4 54 0 805 214 123 5 chr11 70394830 70395017 -78388455 + MER3 DNA MER1_type 1 209 0 259 219 27 27 chr11 70394962 70395035 -78388437 - MER3 DNA MER1_type -105 104 32 * 188 170 64 0 chr11 70397161 70397208 -78386264 - MIR SINE MIR -70 138 89 1867 115 24 20 chr11 70397319 70397615 -78385857 - AluSx SINE Alu -15 297 1 956 126 0 0 chr11 70397615 70397750 -78385722 - AluSq/x SINE Alu -178 135 1 1950 144 3 16 chr11 70399533 70399846 -78383626 - AluSg SINE Alu -1 309 1 798 125 21 11 chr11 70399846 70400007 -78383465 - LOR1-int LTR ERV1 -347 4533 3734 1606 147 72 42 chr11 70400114 70400690 -78382782 - LOR1-int LTR ERV1 -4252 2506 1729 751 189 14 7 chr11 70401211 70401359 -78382113 - LOR1-int LTR ERV1 -6472 1648 1500 * 1144 147 127 16 chr11 70401342 70401594 -78381878 - LOR1-int LTR ERV1 -568 1218 939 2717 87 3 3 chr11 70401943 70402311 -78381161 - THE1C LTR MaLR -7 368 1 1023 133 0 0 chr11 70402337 70402487 -78380985 - MER41D LTR ERV1 0 557 408 192 333 0 0 chr11 70403009 70403075 -78380397 + MIR SINE MIR 79 144 -118 2188 103 0 7 chr11 70404782 70405082 -78378390 - AluSx SINE Alu -14 298 1 269 324 84 6 chr11 70405261 70405440 -78378032 - MLT1J LTR MaLR 0 511 319 349 213 227 128 chr11 70405955 70406121 -78377351 - MLT1K LTR MaLR -17 571 423 2054 109 41 0 chr11 70406121 70406414 -78377058 - AluSx SINE Alu -7 305 1 349 213 227 128 chr11 70406414 70406600 -78376872 - MLT1K LTR MaLR -165 423 184 240 304 25 13 chr11 70406653 70406732 -78376740 - MLT1K LTR MaLR -505 83 4 614 221 90 0 chr11 70406849 70406971 -78376501 + AluJo SINE Alu 4 136 -176 2375 77 0 6 chr11 70407410 70407723 -78375749 + AluY SINE Alu 1 311 0 1132 138 81 0 chr11 70407803 70408013 -78375459 + LTR23 LTR ERV1 1 227 -210 616 118 0 49 chr11 70408013 70408115 -78375357 - FLAM_A SINE Alu -14 128 32 774 131 76 108 chr11 70408117 70408157 -78375315 + LTR23 LTR ERV1 221 261 -206 1798 160 7 0 chr11 70408157 70408450 -78375022 + AluJb SINE Alu 1 295 -17 774 131 76 108 chr11 70408450 70408609 -78374863 + LTR23 LTR ERV1 261 424 -43 201 39 0 0 chr11 70408609 70408635 -78374837 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2039 109 7 0 chr11 70408637 70408920 -78374552 - AluSg SINE Alu -19 291 7 774 131 76 108 chr11 70408920 70408950 -78374522 + LTR23 LTR ERV1 425 467 0 1208 245 23 39 chr11 70408963 70409430 -78374042 + LTR23-int LTR ERV1 15 615 -4508 2081 100 45 0 chr11 70409659 70409950 -78373522 + AluSq SINE Alu 1 304 -9 338 213 13 13 chr11 70410495 70410570 -78372902 + LTR23-int LTR ERV1 1121 1195 -5136 335 209 0 0 chr11 70410578 70410645 -78372827 + tRNA-Glu-GAG tRNA tRNA 9 75 0 354 212 53 53 chr11 70410645 70410777 -78372695 + LTR23-int LTR ERV1 1283 1414 -4917 865 161 6 46 chr11 70410850 70410868 -78372604 + LTR23-int LTR ERV1 1354 1371 -4960 4224 68 47 0 chr11 70410868 70411397 -78372075 + MER41A LTR ERV1 1 554 0 865 161 6 46 chr11 70411397 70411552 -78371920 + LTR23-int LTR ERV1 1371 1520 -4811 2136 118 0 0 chr11 70411731 70412046 -78371426 + AluSq SINE Alu 1 313 0 1128 140 0 11 chr11 70412046 70412258 -78371214 + AluSg/x SINE Alu 134 312 0 2146 59 40 0 chr11 70412341 70412614 -78370858 - AluSx SINE Alu -27 285 2 443 179 228 0 chr11 70412832 70412955 -78370517 + LTR23 LTR ERV1 1 151 -286 2322 72 0 3 chr11 70413010 70413302 -78370170 - AluY SINE Alu -20 291 1 256 238 63 0 chr11 70413436 70413499 -78369973 - MER65-int LTR ERV1 -3226 2720 2654 * 484 137 0 0 chr11 70413475 70413548 -78369924 - MER65-int LTR ERV1 -3564 1307 1235 1376 122 112 49 chr11 70414124 70414411 -78369061 + THE1C LTR MaLR 1 305 -70 1881 101 0 15 chr11 70414414 70414681 -78368791 - AluSx SINE Alu -45 267 5 1830 122 29 6 chr11 70414682 70414993 -78368479 - L1MB3 LINE L1 -47 6136 5819 891 250 9 31 chr11 70414992 70415050 -78368422 + L1M4 LINE L1 4849 4907 -1239 * 1948 167 44 25 chr11 70415050 70415227 -78368245 + THE1C LTR MaLR 3 175 -200 2008 118 47 0 chr11 70415227 70415523 -78367949 + AluSx SINE Alu 3 312 0 1948 167 44 25 chr11 70415523 70415544 -78367928 + THE1C LTR MaLR 175 194 -181 198 0 0 0 chr11 70415544 70415566 -78367906 + (TC)n Simple_repeat Simple_repeat 2 23 0 1948 167 44 25 chr11 70415566 70415732 -78367740 + THE1C LTR MaLR 194 375 0 8883 109 95 61 chr11 70415732 70417260 -78366212 + THE1C-int LTR MaLR 1 1580 0 1904 159 49 35 chr11 70417260 70417630 -78365842 + THE1C LTR MaLR 1 375 0 891 250 9 31 chr11 70417630 70417889 -78365583 + L1M4 LINE L1 4904 5161 -985 1634 178 0 4 chr11 70417894 70418163 -78365309 + AluJb SINE Alu 1 268 -44 2190 95 0 7 chr11 70418181 70418477 -78364995 + AluY SINE Alu 9 302 -9 2203 121 0 0 chr11 70418535 70418841 -78364631 + AluSg SINE Alu 1 306 -4 630 323 108 39 chr11 70418864 70419140 -78364332 - L1M4 LINE L1 -3311 2835 2521 480 35 0 0 chr11 70419140 70419198 -78364274 + (CA)n Simple_repeat Simple_repeat 1 58 0 630 323 108 39 chr11 70419198 70419327 -78364145 - L1M4 LINE L1 -3625 2521 2402 694 206 103 0 chr11 70419701 70419885 -78363587 + MIR SINE MIR 10 212 -50 258 32 0 0 chr11 70420103 70420134 -78363338 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 2123 60 36 36 chr11 70420147 70420448 -78363024 + AluSg SINE Alu 1 301 -9 381 358 95 49 chr11 70420449 70420795 -78362677 - L2 LINE L2 -18 3254 2893 4153 84 30 0 chr11 70421266 70421804 -78361668 - MER41A LTR ERV1 0 554 1 496 171 0 0 chr11 70421860 70421936 -78361536 - AluJ/FLAM SINE Alu -227 85 10 1456 192 39 86 chr11 70421951 70422183 -78361289 - MLT1B LTR MaLR -22 368 127 606 240 8 0 chr11 70422183 70422312 -78361160 + FLAM_A SINE Alu 1 130 -3 2028 125 30 0 chr11 70422313 70422616 -78360856 + AluJb SINE Alu 1 312 0 1456 192 39 86 chr11 70422616 70422767 -78360705 - MLT1B LTR MaLR -262 128 1 925 176 0 0 chr11 70422831 70422990 -78360482 - AluJb SINE Alu -7 305 147 2154 100 0 3 chr11 70423335 70423625 -78359847 + AluY SINE Alu 7 295 -16 3581 169 80 105 chr11 70423635 70423964 -78359508 + L1MC3 LINE L1 5433 5769 -2016 2062 122 0 0 chr11 70423964 70424259 -78359213 + AluSx SINE Alu 1 295 -17 3581 169 80 105 chr11 70424259 70424551 -78358921 + L1MC3 LINE L1 5769 6067 -1718 2082 127 0 7 chr11 70424551 70424859 -78358613 - AluSx SINE Alu -6 306 1 788 182 59 6 chr11 70424862 70425032 -78358440 - FRAM SINE Alu 0 176 1 3581 169 80 105 chr11 70425032 70425628 -78357844 + L1MC3 LINE L1 6069 6679 -1106 1906 132 0 43 chr11 70425628 70425954 -78357518 - AluSx SINE Alu 0 312 1 3581 169 80 105 chr11 70425954 70425965 -78357507 + L1MC3 LINE L1 6679 6689 -1096 1622 176 0 36 chr11 70425965 70426272 -78357200 - AluJo SINE Alu -16 296 1 3581 169 80 105 chr11 70426272 70426470 -78357002 + L1MC3 LINE L1 6689 6922 -863 351 78 0 0 chr11 70426470 70426521 -78356951 + (TCTA)n Simple_repeat Simple_repeat 3 53 0 315 58 19 39 chr11 70426529 70426581 -78356891 + MLT2C1 LTR ERVL 347 397 0 401 176 0 0 chr11 70426581 70426649 -78356823 + L1MC3 LINE L1 7683 7750 -35 1764 125 0 66 chr11 70426656 70426986 -78356486 - AluSx SINE Alu 0 310 1 360 237 104 22 chr11 70426987 70427122 -78356350 + Charlie8 DNA MER1_type 145 290 -2127 238 220 20 0 chr11 70427117 70427167 -78356305 - AluJb SINE Alu -70 232 182 * 219 385 31 0 chr11 70427986 70428116 -78355356 - L2 LINE L2 -526 2788 2655 1537 142 97 15 chr11 70428189 70428456 -78355016 - AluJo SINE Alu -23 289 1 1336 193 22 121 chr11 70428460 70428865 -78354607 + MLT1A1 LTR MaLR 1 365 0 472 321 97 19 chr11 70428976 70429297 -78354175 - LTR16B LTR ERVL -93 357 12 185 258 82 62 chr11 70429459 70429556 -78353916 - L2 LINE L2 -20 3252 3154 372 349 84 5 chr11 70430249 70430464 -78353008 + MIR SINE MIR 3 234 -28 2153 104 13 3 chr11 70431123 70431432 -78352040 + AluSx SINE Alu 1 312 0 411 225 78 54 chr11 70431488 70431617 -78351855 + MIR SINE MIR 49 180 -82 478 175 0 0 chr11 70432057 70432137 -78351335 - L2 LINE L2 0 3313 3234 387 332 134 0 chr11 70432202 70432449 -78351023 + L2 LINE L2 2993 3272 0 852 115 0 8 chr11 70432599 70432729 -78350743 - AluSg SINE Alu -181 129 1 714 209 10 39 chr11 70432737 70432935 -78350537 + LTR23-int LTR ERV1 1417 1610 -3513 1423 212 0 20 chr11 70432935 70433228 -78350244 + AluJo SINE Alu 1 287 -25 499 133 0 0 chr11 70433396 70433471 -78350001 + AluS SINE Alu 224 298 -13 1143 192 19 69 chr11 70433531 70433910 -78349562 + LTR23-int LTR ERV1 1293 1690 -4641 2243 92 3 7 chr11 70433910 70434216 -78349256 + AluSx SINE Alu 1 305 -7 1143 192 19 69 chr11 70434216 70434281 -78349191 + LTR23-int LTR ERV1 1690 1757 -4574 2051 96 10 17 chr11 70434281 70434574 -78348898 + AluSc SINE Alu 1 291 -18 1143 192 19 69 chr11 70434574 70434670 -78348802 + LTR23-int LTR ERV1 1757 3607 -2724 857 118 0 0 chr11 70434671 70434790 -78348682 + FRAM SINE Alu 38 156 -20 1882 187 41 39 chr11 70434790 70434881 -78348591 + LTR23-int LTR ERV1 2179 2268 -2855 2149 120 0 0 chr11 70434881 70435181 -78348291 + AluSx SINE Alu 1 300 -12 1882 187 41 39 chr11 70435181 70435655 -78347817 + LTR23-int LTR ERV1 2268 2745 -2378 2208 94 7 7 chr11 70435658 70435957 -78347515 + AluSx SINE Alu 1 299 -13 637 296 12 21 chr11 70437047 70437287 -78346185 + L1M4 LINE L1 4530 4767 -1379 442 318 50 95 chr11 70437293 70437576 -78345896 - L1M4 LINE L1 -3173 2973 2704 1960 119 0 11 chr11 70437755 70438041 -78345431 - AluSx SINE Alu -1 311 29 436 193 0 74 chr11 70438269 70438308 -78345164 + L1MA6 LINE L1 6172 6212 -88 1674 197 3 0 chr11 70438308 70438602 -78344870 - AluJo SINE Alu -17 295 1 436 193 0 74 chr11 70438602 70438697 -78344775 + L1MA6 LINE L1 6212 6296 -4 6328 80 20 16 chr11 70438773 70439991 -78343481 + SVA Other Other 204 1386 0 396 226 30 90 chr11 70439994 70440127 -78343345 + L1MC4 LINE L1 7918 8042 0 399 280 27 158 chr11 70440162 70440309 -78343163 - L1M4 LINE L1 -1053 5093 5013 823 185 179 0 chr11 70440309 70440493 -78342979 - MER20 DNA MER1_type -2 217 1 399 280 27 158 chr11 70440493 70440681 -78342791 - L1M4 LINE L1 -1133 5013 4802 297 206 76 3 chr11 70440710 70440833 -78342639 + MLT1J2 LTR MaLR 1 166 -284 198 0 0 0 chr11 70440864 70440886 -78342586 + (TC)n Simple_repeat Simple_repeat 1 22 0 446 231 108 82 chr11 70440969 70441238 -78342234 - HERV17 LTR ERV1 -242 4694 4419 1432 149 0 0 chr11 70441252 70441460 -78342012 - AluJb SINE Alu -104 208 1 804 164 121 0 chr11 70441474 70441614 -78341858 + FRAM SINE Alu 1 151 -25 339 225 101 19 chr11 70441615 70441741 -78341731 + L1MC4 LINE L1 1994 6983 -1339 1783 145 11 7 chr11 70441796 70442079 -78341393 + AluJb SINE Alu 1 284 -28 1090 79 0 0 chr11 70442107 70442247 -78341225 - AluSg/x SINE Alu -14 298 159 224 160 0 80 chr11 70443092 70443142 -78340330 - MIR SINE MIR -56 152 107 182 354 70 13 chr11 70443932 70444090 -78339382 - MIR SINE MIR -60 202 36 385 278 6 11 chr11 70444453 70444633 -78338839 + (TG)n Simple_repeat Simple_repeat 1 179 0 312 266 0 0 chr11 70444633 70444697 -78338775 + (CGTG)n Simple_repeat Simple_repeat 1 64 0 511 244 6 6 chr11 70444707 70444887 -78338585 + (TG)n Simple_repeat Simple_repeat 1 180 0 250 273 68 0 chr11 70444896 70444984 -78338488 + MIR SINE MIR 46 139 -69 241 245 38 0 chr11 70445101 70445154 -78338318 - MIR3 SINE MIR -45 163 109 808 118 15 0 chr11 70445159 70445294 -78338178 + LTR45B LTR ERV1 222 358 -131 2500 44 0 0 chr11 70445869 70446162 -78337310 - AluY SINE Alu -17 294 2 1420 162 6 89 chr11 70446545 70446688 -78336784 + AluJo SINE Alu 1 154 -177 1932 100 68 4 chr11 70446688 70446968 -78336504 + AluSq SINE Alu 5 302 -11 1420 162 6 89 chr11 70446968 70447181 -78336291 + AluJo SINE Alu 154 331 0 1713 164 52 0 chr11 70447899 70448186 -78335286 - AluJo SINE Alu -10 302 1 265 211 28 0 chr11 70448347 70448418 -78335054 - HERV17 LTR ERV1 -824 7575 7503 * 449 157 280 0 chr11 70448416 70448652 -78334820 - HERV17 LTR ERV1 -5755 1141 703 34235 88 25 28 chr11 70448653 70454755 -78328717 - HERV17 LTR ERV1 0 2438 17 504 303 75 5 chr11 70456244 70456432 -78327040 + MIR SINE MIR 47 247 -15 2283 102 0 6 chr11 70456433 70456747 -78326725 + AluSx SINE Alu 1 312 0 274 146 0 0 chr11 70456748 70456789 -78326683 - Alu SINE Alu -261 42 2 495 71 0 0 chr11 70456791 70456861 -78326611 + MSTA LTR MaLR 359 428 0 443 239 77 33 chr11 70457050 70457273 -78326199 - MER93b LTR ERV1 0 373 167 2002 138 0 0 chr11 70457279 70457591 -78325881 + AluSx SINE Alu 1 312 0 919 129 135 16 chr11 70457595 70457788 -78325684 - MSTA LTR MaLR 0 428 213 1535 105 0 0 chr11 70457788 70457988 -78325484 - AluSq SINE Alu -113 200 1 538 121 111 0 chr11 70457988 70458087 -78325385 + MER34 LTR ERV1 433 542 0 252 143 0 0 chr11 70459570 70459612 -78323860 + (CA)n Simple_repeat Simple_repeat 2 43 0 222 116 47 0 chr11 70460356 70460399 -78323073 + MIR SINE MIR 86 130 -132 2035 75 4 14 chr11 70460643 70460923 -78322549 - AluSq SINE Alu -35 278 2 406 194 218 0 chr11 70461141 70461265 -78322207 + LTR23 LTR ERV1 1 151 -286 2347 72 0 3 chr11 70461320 70461612 -78321860 - AluY SINE Alu -20 291 1 461 137 0 0 chr11 70461785 70461858 -78321614 - MER65-int LTR ERV1 -3564 1307 1235 1687 160 111 57 chr11 70462434 70462724 -78320748 + MSTA LTR MaLR 1 274 -154 1770 102 0 12 chr11 70462724 70462968 -78320504 - AluSx SINE Alu -45 267 27 2218 114 0 9 chr11 70462968 70463283 -78320189 + AluSx SINE Alu 1 312 0 1687 160 111 57 chr11 70463283 70463397 -78320075 + MSTA LTR MaLR 273 428 0 443 239 77 33 chr11 70463586 70463809 -78319663 - MER93b LTR ERV1 0 373 167 2002 138 0 0 chr11 70463815 70464127 -78319345 + AluSx SINE Alu 1 312 0 906 135 135 16 chr11 70464131 70464324 -78319148 - MSTA LTR MaLR 0 428 213 1535 105 0 0 chr11 70464324 70464524 -78318948 - AluSq SINE Alu -113 200 1 538 121 111 0 chr11 70464524 70464623 -78318849 + MER34 LTR ERV1 433 542 0 273 119 0 0 chr11 70466104 70466146 -78317326 + (CA)n Simple_repeat Simple_repeat 2 43 0 268 156 0 0 chr11 70466890 70466935 -78316537 + MIR SINE MIR 86 130 -132 2178 112 7 3 chr11 70467472 70467777 -78315695 + AluSx SINE Alu 1 306 -6 3631 134 48 17 chr11 70468031 70468579 -78314893 - LTR26 LTR ERV1 0 603 35 8062 51 9 0 chr11 70468579 70469539 -78313933 - LTR5 LTR ERVK 0 969 1 3631 134 48 17 chr11 70469539 70469572 -78313900 - LTR26 LTR ERV1 -568 35 4 372 357 120 23 chr11 70469684 70470068 -78313404 - L2 LINE L2 -455 2859 2439 306 301 103 7 chr11 70470284 70470430 -78313042 + MIR SINE MIR 79 238 -24 390 342 87 0 chr11 70470893 70471042 -78312430 + MIR SINE MIR 46 207 -55 222 364 23 0 chr11 70471682 70471770 -78311702 - MIR SINE MIR -113 149 60 193 241 0 96 chr11 70472300 70472383 -78311089 - L2 LINE L2 -328 2985 2911 237 315 87 24 chr11 70473085 70473212 -78310260 - MIR SINE MIR -39 223 89 226 293 90 45 chr11 70473398 70473531 -78309941 - L2 LINE L2 -16 3256 3118 1392 118 5 5 chr11 70473878 70474099 -78309373 - pTR5 LTR ERV1 -2046 392 172 356 304 8 0 chr11 70474102 70474227 -78309245 - LTR30 LTR ERV1 -80 642 517 355 112 189 10 chr11 70474227 70474329 -78309143 - pTR5 LTR ERV1 -463 1921 118 346 316 136 24 chr11 70475000 70475206 -78308266 + MIR SINE MIR 23 251 -11 373 299 117 7 chr11 70475244 70475398 -78308074 + L3 LINE CR1 1295 1465 -112 22 0 0 0 chr11 70476160 70476182 -78307290 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr11 70477379 70477402 -78306070 + (TG)n Simple_repeat Simple_repeat 1 23 0 1980 142 0 31 chr11 70478113 70478431 -78305041 - AluSx SINE Alu -2 310 3 2220 93 0 0 chr11 70478438 70478738 -78304734 - AluSg SINE Alu 0 300 1 575 251 170 14 chr11 70478748 70478971 -78304501 - MIR SINE MIR -2 260 3 570 314 128 17 chr11 70485085 70485499 -78297973 + L2 LINE L2 2813 3272 0 264 289 92 8 chr11 70485544 70485720 -78297752 - L2 LINE L2 -154 3118 2925 222 252 37 93 chr11 70486417 70486524 -78296948 + L2 LINE L2 3191 3291 -22 325 309 157 11 chr11 70487888 70488079 -78295393 + L2 LINE L2 2981 3199 -73 451 287 26 0 chr11 70488091 70488206 -78295266 + MIR SINE MIR 69 186 -76 366 205 9 54 chr11 70488552 70488664 -78294808 + L1M3 LINE L1 5423 5529 -654 384 292 178 9 chr11 70488820 70489236 -78294236 - L2 LINE L2 -268 3045 2550 348 308 77 13 chr11 70490391 70490625 -78292847 - L2 LINE L2 -182 3090 2842 205 246 82 0 chr11 70491200 70491261 -78292211 - MIR SINE MIR -112 96 31 305 78 52 164 chr11 70491359 70491401 -78292071 - L1MB3 LINE L1 -6 6177 6132 350 0 44 0 chr11 70491401 70491446 -78292026 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1958 123 3 3 chr11 70491446 70491731 -78291741 - AluSx SINE Alu -27 285 1 305 78 52 164 chr11 70491731 70491783 -78291689 - L1MB3 LINE L1 -50 6133 6095 4721 54 5 5 chr11 70491783 70492374 -78291098 + LTR10C LTR ERV1 1 591 0 305 78 52 164 chr11 70492374 70492393 -78291079 - L1MB3 LINE L1 -88 6095 6075 228 194 28 56 chr11 70493051 70493123 -78290349 + MIR SINE MIR 67 136 -72 197 344 31 55 chr11 70493407 70493535 -78289937 + MIR3 SINE MIR 30 154 -54 3661 180 92 11 chr11 70493714 70494790 -78288682 - L1MA7 LINE L1 -143 6148 5016 195 300 120 10 chr11 70496121 70496221 -78287251 + L2 LINE L2 385 495 -2819 710 310 61 66 chr11 70497332 70497915 -78285557 + HAL1b LINE L1 240 385 -1199 233 161 13 11 chr11 70497916 70498139 -78285333 + AluSq SINE Alu 43 301 0 1746 137 50 0 chr11 70498224 70498502 -78284970 + AluJb SINE Alu 1 292 -20 2012 121 35 0 chr11 70498510 70498800 -78284672 + AluSx SINE Alu 3 302 -10 308 308 46 8 chr11 70499758 70499888 -78283584 - MIR3 SINE MIR -62 146 12 216 208 0 38 chr11 70501625 70501678 -78281794 + C-rich Low_complexity Low_complexity 3 53 0 327 280 36 77 chr11 70503357 70503525 -78279947 - MIR3 SINE MIR 0 208 48 196 297 44 22 chr11 70506043 70506134 -78277338 - MIR SINE MIR -113 149 57 462 271 159 12 chr11 70506977 70507147 -78276325 - MER91A DNA MER1_type 0 196 2 222 224 40 53 chr11 70507441 70507517 -78275955 + MIR SINE MIR 92 166 -96 390 212 0 54 chr11 70507847 70507955 -78275517 + MIR SINE MIR 58 161 -47 287 102 0 20 chr11 70508854 70508903 -78274569 + (TTTTC)n Simple_repeat Simple_repeat 2 49 0 685 214 15 0 chr11 70508917 70509048 -78274424 + FLAM_C SINE Alu 1 133 0 247 88 9 3 chr11 70509059 70509294 -78274178 + AluSp SINE Alu 1 313 0 1273 101 0 0 chr11 70509295 70509464 -78274008 + AluSc SINE Alu 133 301 -8 180 0 0 0 chr11 70509475 70509495 -78273977 + (A)n Simple_repeat Simple_repeat 1 20 0 2136 123 0 3 chr11 70509514 70509822 -78273650 + AluSx SINE Alu 1 307 -5 1639 167 11 14 chr11 70509837 70510118 -78273354 - AluJo SINE Alu -30 282 3 28 29 0 0 chr11 70510633 70510668 -78272804 + GC_rich Low_complexity Low_complexity 1 35 0 215 228 13 25 chr11 70510775 70510854 -78272618 + (CCG)n Simple_repeat Simple_repeat 2 79 0 398 299 9 9 chr11 70512102 70512209 -78271263 - L2 LINE L2 -5 3308 3202 409 292 67 0 chr11 70513203 70513323 -78270149 - MIR SINE MIR -63 145 18 23 0 0 0 chr11 70515942 70515965 -78267507 + GC_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr11 70516137 70516167 -78267305 + GC_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr11 70516315 70516344 -78267128 + GC_rich Low_complexity Low_complexity 1 29 0 2024 113 0 44 chr11 70516817 70516988 -78266484 - AluJo SINE Alu -8 304 127 2198 40 58 0 chr11 70516988 70517265 -78266207 - AluY SINE Alu -18 293 1 2289 93 7 0 chr11 70517265 70517575 -78265897 - AluSx SINE Alu 0 312 1 2024 113 0 44 chr11 70517575 70517720 -78265752 - AluJo SINE Alu -183 129 1 222 135 0 0 chr11 70517728 70517765 -78265707 - MIR SINE MIR -109 153 117 303 306 66 25 chr11 70518138 70518334 -78265138 + L2 LINE L2 2908 3111 -161 279 0 0 0 chr11 70519955 70519986 -78263486 + (CA)n Simple_repeat Simple_repeat 1 31 0 182 279 93 35 chr11 70520288 70520374 -78263098 - MIR SINE MIR -56 152 62 2218 104 7 0 chr11 70521124 70521422 -78262050 - AluSq SINE Alu -13 300 1 2149 138 0 0 chr11 70521491 70521802 -78261670 - AluSx SINE Alu -1 311 1 1241 231 3 43 chr11 70521836 70522160 -78261312 + AluJo SINE Alu 2 312 0 2401 83 3 3 chr11 70522176 70522489 -78260983 - AluSp SINE Alu 0 313 1 1965 136 0 3 chr11 70522500 70522795 -78260677 - AluSx SINE Alu -18 294 1 921 204 0 0 chr11 70522797 70522954 -78260518 - FRAM SINE Alu -9 157 1 25 31 0 0 chr11 70523608 70523640 -78259832 + GC_rich Low_complexity Low_complexity 1 32 0 278 336 26 18 chr11 70524695 70524808 -78258664 - L2 LINE L2 -2 3311 3198 1205 165 17 65 chr11 70524842 70524907 -78258565 + MER20 DNA MER1_type 1 68 -151 1820 117 33 27 chr11 70524907 70525206 -78258266 - AluSx SINE Alu -11 301 1 1940 124 3 42 chr11 70525206 70525375 -78258097 - AluSx SINE Alu -17 295 142 2012 130 0 25 chr11 70525375 70525691 -78257781 - AluSx SINE Alu -4 308 1 1940 124 3 42 chr11 70525691 70525827 -78257645 - AluSx SINE Alu -170 142 2 1205 165 17 65 chr11 70525827 70525990 -78257482 + MER20 DNA MER1_type 66 219 0 2241 97 13 0 chr11 70526124 70526424 -78257048 - AluSx SINE Alu -8 304 1 195 100 0 0 chr11 70526742 70526772 -78256700 + (TCCA)n Simple_repeat Simple_repeat 2 31 0 233 319 53 21 chr11 70526776 70526870 -78256602 - L2 LINE L2 0 3272 3176 458 226 115 55 chr11 70527346 70527563 -78255909 + L2 LINE L2 3043 3272 0 218 288 0 15 chr11 70530150 70530216 -78253256 + C-rich Low_complexity Low_complexity 2 66 0 189 74 0 0 chr11 70531310 70531337 -78252135 + (CAG)n Simple_repeat Simple_repeat 1 27 0 269 270 174 54 chr11 70531569 70531977 -78251495 + L2 LINE L2 2768 3223 -90 184 275 113 12 chr11 70537644 70537724 -78245748 + MIR SINE MIR 58 145 -63 221 226 0 48 chr11 70539376 70539460 -78244012 + C-rich Low_complexity Low_complexity 5 84 0 296 217 25 50 chr11 70539573 70539693 -78243779 + G-rich Low_complexity Low_complexity 3 119 0 23 54 0 0 chr11 70539749 70539786 -78243686 + GC_rich Low_complexity Low_complexity 1 37 0 2043 86 58 3 chr11 70540023 70540315 -78243157 - AluY SINE Alu -3 308 1 1298 124 28 32 chr11 70540372 70540589 -78242883 - AluJo SINE Alu -13 299 84 1891 138 0 7 chr11 70540592 70540888 -78242584 - AluSx SINE Alu -14 298 5 266 261 174 43 chr11 70541386 70541501 -78241971 - MIR SINE MIR -113 149 20 839 332 84 14 chr11 70541559 70541737 -78241735 + L2 LINE L2 2921 3085 -228 1728 146 35 3 chr11 70541737 70542025 -78241447 - AluJo SINE Alu -15 297 1 839 332 84 14 chr11 70542025 70542213 -78241259 + L2 LINE L2 3085 3313 0 571 122 0 0 chr11 70542473 70542555 -78240917 - AluSx SINE Alu -12 300 219 4541 73 78 43 chr11 70542556 70542627 -78240845 + LTR8 LTR ERV1 2 69 -622 2302 93 0 7 chr11 70542627 70542937 -78240535 - AluY SINE Alu -3 308 1 4541 73 78 43 chr11 70542937 70543123 -78240349 + LTR8 LTR ERV1 69 247 -444 2315 86 3 6 chr11 70543123 70543437 -78240035 + AluSp SINE Alu 1 313 0 4541 73 78 43 chr11 70543437 70543845 -78239627 + LTR8 LTR ERV1 247 691 0 1570 104 14 5 chr11 70543845 70544065 -78239407 - AluSx SINE Alu -90 222 1 615 245 25 44 chr11 70544699 70544858 -78238614 - MIR SINE MIR -87 175 20 2381 69 3 25 chr11 70544859 70545177 -78238295 - AluY SINE Alu 0 311 1 223 305 51 34 chr11 70545369 70545487 -78237985 - MIR SINE MIR -41 221 102 2456 64 0 0 chr11 70545874 70546170 -78237302 - AluSc SINE Alu -13 296 1 342 315 23 0 chr11 70546618 70546737 -78236735 - MIR SINE MIR -37 171 46 1546 164 59 7 chr11 70549069 70549356 -78234116 - AluJb SINE Alu -1 311 10 2075 65 98 0 chr11 70549473 70549750 -78233722 + AluSp SINE Alu 1 304 -9 358 273 73 18 chr11 70551133 70551243 -78232229 - MIR SINE MIR -105 157 42 292 296 156 15 chr11 70553291 70553426 -78230046 - MIR SINE MIR -89 173 20 2129 113 3 0 chr11 70554048 70554379 -78229093 + AluSx SINE Alu 1 312 0 218 200 0 0 chr11 70555002 70555042 -78228430 + L3 LINE CR1 1419 1458 -119 24 0 0 0 chr11 70555104 70555128 -78228344 + AT_rich Low_complexity Low_complexity 1 24 0 721 177 8 8 chr11 70555136 70555266 -78228206 + FLAM_C SINE Alu 2 131 -2 320 273 68 0 chr11 70555317 70555405 -78228067 + L1MEd LINE L1 113 206 -5913 2165 111 7 0 chr11 70555740 70556038 -78227434 + AluSx SINE Alu 1 300 -12 1908 141 10 7 chr11 70556250 70556548 -78226924 + AluSx SINE Alu 1 299 -13 382 232 96 20 chr11 70556557 70556588 -78226884 + L1MEd LINE L1 890 917 -5202 243 0 0 0 chr11 70556588 70556615 -78226857 + (CA)n Simple_repeat Simple_repeat 2 28 0 382 232 96 20 chr11 70556615 70556772 -78226700 + L1MEd LINE L1 917 1096 -5023 2250 91 0 10 chr11 70556772 70557070 -78226402 + AluY SINE Alu 1 295 -16 972 206 7 65 chr11 70557070 70557317 -78226155 + L1ME1 LINE L1 5552 5781 -385 2237 102 0 10 chr11 70557317 70557620 -78225852 - AluSg SINE Alu -10 300 1 972 206 7 65 chr11 70557620 70557663 -78225809 + L1ME1 LINE L1 5781 5825 -341 788 122 0 0 chr11 70557664 70557771 -78225701 + FLAM_C SINE Alu 1 107 -36 708 167 0 58 chr11 70557780 70557918 -78225554 - FLAM_C SINE Alu -3 130 1 1530 212 3 10 chr11 70557919 70558216 -78225256 - AluJb SINE Alu -17 295 1 538 259 66 14 chr11 70558216 70558428 -78225044 - L1MC/D LINE L1 -2045 5763 5541 2125 113 3 0 chr11 70558796 70559087 -78224385 + AluSx SINE Alu 1 292 -20 1601 171 23 29 chr11 70559121 70559431 -78224041 - AluJb SINE Alu -4 308 1 516 311 120 22 chr11 70560504 70560963 -78222509 + L2 LINE L2 2015 2518 -796 2285 85 3 22 chr11 70560989 70561305 -78222167 - AluSp SINE Alu -3 310 1 1683 185 10 32 chr11 70561448 70561761 -78221711 + AluJo SINE Alu 1 306 -6 198 0 0 0 chr11 70561761 70561783 -78221689 + (TA)n Simple_repeat Simple_repeat 2 23 0 24 0 0 0 chr11 70561897 70561921 -78221551 + AT_rich Low_complexity Low_complexity 1 24 0 2010 141 0 0 chr11 70561952 70562243 -78221229 + AluSx SINE Alu 1 291 -21 506 299 114 5 chr11 70562644 70562845 -78220627 + MIR SINE MIR 32 254 -8 385 318 82 0 chr11 70562891 70563086 -78220386 + L2 LINE L2 1438 1648 -1666 2209 271 74 19 chr11 70563086 70564094 -78219378 + L2 LINE L2 2144 3214 -99 413 257 158 18 chr11 70564123 70564334 -78219138 + MIR SINE MIR 8 243 -19 2489 61 0 6 chr11 70564562 70564875 -78218597 - AluY SINE Alu 0 311 1 2018 72 61 4 chr11 70564886 70565165 -78218307 - AluY SINE Alu -16 295 1 2414 58 0 3 chr11 70566331 70566625 -78216847 + AluY SINE Alu 1 293 -18 268 288 27 27 chr11 70568425 70568536 -78214936 - MIR SINE MIR 0 262 152 2012 115 30 3 chr11 70572863 70573159 -78210313 - AluSx SINE Alu -8 304 1 249 281 56 50 chr11 70573267 70573369 -78210103 + L2 LINE L2 1890 1995 -1319 1720 126 7 33 chr11 70573369 70573503 -78209969 - AluJb SINE Alu -49 263 138 2280 87 3 10 chr11 70573503 70573814 -78209658 - AluSc SINE Alu 0 309 1 1720 126 7 33 chr11 70573814 70573949 -78209523 - AluJb SINE Alu -174 138 1 249 281 56 50 chr11 70573949 70574006 -78209466 + L2 LINE L2 1995 2050 -1264 1847 127 10 33 chr11 70574076 70574383 -78209089 + AluSx SINE Alu 1 300 -12 2056 152 0 0 chr11 70574428 70574738 -78208734 + AluSx SINE Alu 1 310 -2 2451 77 0 0 chr11 70574813 70575123 -78208349 + AluY SINE Alu 2 311 0 2257 69 10 0 chr11 70575149 70575437 -78208035 - AluSp SINE Alu -22 291 1 237 272 96 88 chr11 70575520 70575645 -78207827 - L2 LINE L2 0 3313 3188 205 352 65 0 chr11 70575775 70575883 -78207589 - L2 LINE L2 0 3272 3158 954 133 0 172 chr11 70576518 70576751 -78206721 + 7SK RNA RNA 1 193 0 230 344 44 0 chr11 70576886 70576976 -78206496 - MIR SINE MIR -48 214 121 2102 108 10 0 chr11 70577398 70577686 -78205786 + AluSx SINE Alu 1 291 -21 2527 59 0 0 chr11 70577690 70577995 -78205477 + AluY SINE Alu 1 305 -6 552 305 72 63 chr11 70579892 70580450 -78203022 - L2 LINE L2 -1074 2240 1678 252 86 0 0 chr11 70583002 70583037 -78200435 + (T)n Simple_repeat Simple_repeat 1 35 0 180 0 0 0 chr11 70584718 70584738 -78198734 + (CA)n Simple_repeat Simple_repeat 2 21 0 184 268 197 14 chr11 70585384 70585455 -78198017 + MIR3 SINE MIR 14 97 -111 204 146 42 42 chr11 70586673 70586721 -78196751 + C-rich Low_complexity Low_complexity 3 50 0 285 51 0 0 chr11 70586723 70586762 -78196710 + (CGGGGG)n Simple_repeat Simple_repeat 5 43 0 22 0 0 0 chr11 70586948 70586970 -78196502 + GC_rich Low_complexity Low_complexity 1 22 0 197 139 23 0 chr11 70587051 70587094 -78196378 + (CCCGG)n Simple_repeat Simple_repeat 5 48 0 211 204 20 0 chr11 70587102 70587151 -78196321 + (CCCG)n Simple_repeat Simple_repeat 2 51 0 215 278 10 21 chr11 70587200 70587297 -78196175 + C-rich Low_complexity Low_complexity 6 101 0 23 33 0 0 chr11 70587525 70587555 -78195917 + GC_rich Low_complexity Low_complexity 1 30 0 222 229 0 21 chr11 70589373 70589421 -78194051 + CT-rich Low_complexity Low_complexity 4 50 0 210 224 0 20 chr11 70589547 70589596 -78193876 + C-rich Low_complexity Low_complexity 5 52 0 201 95 24 71 chr11 70589740 70589782 -78193690 + (GGGAGA)n Simple_repeat Simple_repeat 4 43 0 360 348 0 22 chr11 70589914 70590095 -78193377 + G-rich Low_complexity Low_complexity 1 177 0 1516 137 54 43 chr11 70590950 70591228 -78192244 + AluJo SINE Alu 14 294 -18 194 179 269 15 chr11 70591455 70591522 -78191950 + MIR SINE MIR 33 116 -92 2452 48 0 23 chr11 70592251 70592560 -78190912 - AluY SINE Alu -9 302 1 563 303 21 27 chr11 70592560 70592748 -78190724 - MIR SINE MIR -67 195 9 294 73 0 0 chr11 70593352 70593393 -78190079 + (TG)n Simple_repeat Simple_repeat 1 41 0 215 264 33 44 chr11 70594101 70594192 -78189280 + MIR SINE MIR 58 147 -61 1521 154 70 26 chr11 70594246 70594402 -78189070 - AluJb SINE Alu 0 307 159 2176 86 43 10 chr11 70594402 70594704 -78188768 - AluSx SINE Alu 0 312 1 1521 154 70 26 chr11 70594704 70594842 -78188630 - AluJb SINE Alu -148 159 1 1148 117 6 0 chr11 70595300 70595471 -78188001 - AluSg/x SINE Alu -10 300 129 1323 127 45 18 chr11 70596060 70596280 -78187192 + AluJo SINE Alu 83 308 -4 427 265 88 16 chr11 70596420 70596641 -78186831 - MIR SINE MIR -12 250 15 2474 34 0 3 chr11 70597382 70597675 -78185797 + AluY SINE Alu 1 292 -19 682 173 0 0 chr11 70597954 70598064 -78185408 - AluSx SINE Alu -14 298 189 2426 64 0 0 chr11 70598064 70598361 -78185111 + AluY SINE Alu 1 297 -14 1498 102 0 19 chr11 70598361 70598564 -78184908 - AluSx SINE Alu -111 201 1 289 251 223 74 chr11 70598786 70598961 -78184511 - MIR SINE MIR -46 216 16 278 341 0 11 chr11 70599013 70599104 -78184368 - L2 LINE L2 -1 3312 3223 181 305 37 12 chr11 70599472 70599554 -78183918 + L2 LINE L2 2985 3068 -204 626 334 39 6 chr11 70599646 70599957 -78183515 + L2 LINE L2 2832 3152 -161 1753 148 37 4 chr11 70599957 70600227 -78183245 - AluJb SINE Alu -33 279 1 862 164 0 0 chr11 70600445 70600585 -78182887 - FLAM_C SINE Alu -3 140 1 1247 124 6 0 chr11 70600616 70600794 -78182678 + AluJb SINE Alu 129 307 -5 246 306 182 8 chr11 70600816 70600937 -78182535 - MIR3 SINE MIR -34 174 33 342 251 87 87 chr11 70601219 70601414 -78182058 - MIR3 SINE MIR -7 201 7 227 343 0 0 chr11 70601533 70601600 -78181872 - L2 LINE L2 -73 3199 3133 2265 90 0 0 chr11 70602072 70602360 -78181112 - AluSx SINE Alu -24 288 1 943 185 16 5 chr11 70602363 70602547 -78180925 - AluSg/x SINE Alu -7 305 120 750 323 101 44 chr11 70602548 70602631 -78180841 - L2 LINE L2 -8 3264 3187 1745 173 0 3 chr11 70602631 70602947 -78180525 + AluJo SINE Alu 2 316 0 2202 115 0 0 chr11 70602952 70603257 -78180215 + AluSx SINE Alu 1 305 -7 750 323 101 44 chr11 70603257 70603948 -78179524 - L2 LINE L2 -88 3184 2438 1338 93 6 0 chr11 70604408 70604590 -78178882 - AluSc SINE Alu -19 290 108 26 30 0 0 chr11 70604856 70604889 -78178583 + AT_rich Low_complexity Low_complexity 1 33 0 2031 136 0 16 chr11 70605037 70605347 -78178125 + AluJo SINE Alu 1 305 -7 268 346 6 13 chr11 70605347 70605506 -78177966 + L1M4 LINE L1 2190 2347 -3799 2153 120 7 0 chr11 70605517 70605826 -78177646 - AluSx SINE Alu -1 311 1 198 0 0 0 chr11 70605851 70605873 -78177599 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 763 186 29 0 chr11 70605896 70606036 -78177436 + FAM SINE Alu 1 41 -8 746 329 106 33 chr11 70606040 70606191 -78177281 + L1M4 LINE L1 2379 2518 -3628 462 36 0 0 chr11 70606191 70606247 -78177225 + (TG)n Simple_repeat Simple_repeat 1 56 0 746 329 106 33 chr11 70606247 70606521 -78176951 + L1M4 LINE L1 2518 2835 -3311 2215 125 0 0 chr11 70606544 70606849 -78176623 - AluSg SINE Alu -5 305 1 2251 92 3 0 chr11 70606906 70607199 -78176273 - AluY SINE Alu -9 302 9 1676 178 0 4 chr11 70607217 70607486 -78175986 - AluJb SINE Alu -44 268 1 835 250 9 31 chr11 70607491 70607750 -78175722 - L1M4 LINE L1 -985 5161 4898 1903 159 49 35 chr11 70607750 70608120 -78175352 - THE1C LTR MaLR 0 375 1 8820 111 95 61 chr11 70608120 70609648 -78173824 - THE1C-int LTR MaLR 0 1580 1 1965 164 44 25 chr11 70609648 70609814 -78173658 - THE1C LTR MaLR 0 375 214 198 0 0 0 chr11 70609814 70609836 -78173636 + (GA)n Simple_repeat Simple_repeat 2 23 0 1965 164 44 25 chr11 70609836 70609857 -78173615 - THE1C LTR MaLR -161 214 195 2031 118 47 0 chr11 70609857 70610153 -78173319 - AluSx SINE Alu 0 312 3 1965 164 44 25 chr11 70610153 70610330 -78173142 - THE1C LTR MaLR -180 195 3 835 250 9 31 chr11 70610330 70610388 -78173084 - L1M4 LINE L1 -1245 4901 4849 * 1716 122 29 6 chr11 70610387 70610698 -78172774 + L1MB3 LINE L1 5819 6136 -47 2236 84 0 33 chr11 70610699 70610998 -78172474 + AluSx SINE Alu 5 293 -19 817 129 8 0 chr11 70611000 70611124 -78172348 - FRAM SINE Alu -20 156 32 262 152 0 0 chr11 70611130 70611176 -78172296 + FLAM_A SINE Alu 83 128 -5 807 171 7 41 chr11 70611194 70611340 -78172132 - AluJo SINE Alu -171 141 1 317 100 7 121 chr11 70611340 70611405 -78172067 + LTR23-int LTR ERV1 2903 2945 -2178 2397 70 0 6 chr11 70611405 70611718 -78171754 - AluY SINE Alu 0 311 1 317 100 7 121 chr11 70611718 70611792 -78171680 + LTR23-int LTR ERV1 2945 3026 -2097 1964 139 3 3 chr11 70611793 70612087 -78171385 - AluSx SINE Alu -16 296 3 2144 131 70 40 chr11 70612117 70612278 -78171194 + LTR23-int LTR ERV1 4127 4282 -2049 2188 107 3 0 chr11 70612278 70612569 -78170903 - AluSg SINE Alu -18 292 1 2144 131 70 40 chr11 70612569 70612904 -78170568 + LTR23-int LTR ERV1 4282 4638 -1693 1548 178 22 0 chr11 70612920 70613190 -78170282 - AluJo SINE Alu -6 306 31 759 172 183 6 chr11 70613466 70613646 -78169826 + MER51C LTR ERV1 429 640 0 6022 145 16 13 chr11 70613679 70614269 -78169203 + LTR23-int LTR ERV1 4434 5021 -102 5956 122 28 47 chr11 70614269 70615242 -78168230 + LTR13 LTR ERVK 1 954 0 6022 145 16 13 chr11 70615242 70615825 -78167647 + LTR23-int LTR ERV1 5021 5601 478 2095 122 0 16 chr11 70615825 70616128 -78167344 - AluSx SINE Alu -14 298 1 6022 145 16 13 chr11 70616128 70616156 -78167316 + LTR23-int LTR ERV1 5601 4809 -314 1950 151 0 3 chr11 70616156 70616455 -78167017 - AluJb SINE Alu -14 298 1 6022 145 16 13 chr11 70616455 70616507 -78166965 + LTR23-int LTR ERV1 4808 4858 -265 1231 186 30 17 chr11 70616753 70617048 -78166424 + LTR23 LTR ERV1 1 299 -138 248 146 0 0 chr11 70617056 70617097 -78166375 + AluJb SINE Alu 85 125 -177 1514 89 5 14 chr11 70617127 70617340 -78166132 - AluSq SINE Alu -100 213 3 1038 190 0 5 chr11 70617340 70617524 -78165948 + AluJb SINE Alu 118 300 -12 1833 123 45 27 chr11 70617526 70617818 -78165654 + AluSx SINE Alu 1 297 -15 282 295 32 32 chr11 70618156 70618312 -78165160 + LTR16C LTR ERVL 336 491 0 469 227 55 0 chr11 70618427 70618537 -78164935 + L2 LINE L2 3192 3307 -6 330 290 70 23 chr11 70619211 70619370 -78164102 - MIR SINE MIR -45 163 6 819 238 49 45 chr11 70620481 70620532 -78162940 - MER58A DNA MER1_type -2196 224 175 2557 52 0 0 chr11 70620532 70620839 -78162633 + AluY SINE Alu 1 307 -4 819 238 49 45 chr11 70620839 70621010 -78162462 - MER58A DNA MER1_type -2245 175 1 499 310 103 93 chr11 70621697 70621991 -78161481 + L1MEc LINE L1 854 1144 -1363 2006 112 28 0 chr11 70621991 70622278 -78161194 + AluSq SINE Alu 1 295 -18 499 310 103 93 chr11 70622278 70622574 -78160898 + L1MEc LINE L1 1144 1450 -1057 189 0 0 0 chr11 70622603 70622624 -78160848 + (A)n Simple_repeat Simple_repeat 1 21 0 205 248 0 89 chr11 70622748 70622849 -78160623 + G-rich Low_complexity Low_complexity 1 92 0 24 0 0 0 chr11 70623046 70623070 -78160402 + GC_rich Low_complexity Low_complexity 1 24 0 694 164 0 0 chr11 70624454 70624558 -78158914 + FRAM SINE Alu 39 142 -34 2305 84 0 3 chr11 70624558 70624857 -78158615 - AluSp SINE Alu -15 298 1 391 127 42 0 chr11 70629399 70629470 -78154002 + U6 snRNA snRNA 1 74 -33 2220 99 3 0 chr11 70629481 70629774 -78153698 + AluSx SINE Alu 10 303 -9 2209 78 31 3 chr11 70629795 70630088 -78153384 + AluSp SINE Alu 1 301 -12 210 171 14 86 chr11 70630669 70630739 -78152733 - L2 LINE L2 -2805 509 445 2598 37 0 0 chr11 70631413 70631711 -78151761 - AluSg SINE Alu -12 298 1 200 330 30 10 chr11 70633252 70633352 -78150120 - L2 LINE L2 -248 3024 2923 1494 152 7 29 chr11 70633481 70633757 -78149715 - AluJo SINE Alu -8 304 35 1905 107 59 17 chr11 70633809 70634099 -78149373 - AluSx SINE Alu -10 302 1 521 159 77 72 chr11 70634106 70634146 -78149326 - L1M4 LINE L1 -952 5194 5156 252 59 0 0 chr11 70634146 70634180 -78149292 + (TG)n Simple_repeat Simple_repeat 1 34 0 1989 128 0 4 chr11 70634180 70634461 -78149011 - AluSq SINE Alu -33 280 1 521 159 77 72 chr11 70634461 70634626 -78148846 - L1M4 LINE L1 -989 5157 4987 359 173 93 13 chr11 70634629 70634704 -78148768 - L1M4 LINE L1 -2845 3301 3221 186 71 0 0 chr11 70634714 70634742 -78148730 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1901 114 12 2 chr11 70685857 70686169 -78097303 + L1P LINE L1 4948 5260 -886 621 72 0 21 chr11 70686694 70686791 -78096681 - AluY SINE Alu -2 309 215 905 113 0 0 chr11 70686792 70686907 -78096565 - AluSq/x SINE Alu -197 115 1 7154 30 2 0 chr11 70688140 70689203 -78094269 + L1PA3 LINE L1 5105 6169 0 341 253 10 40 chr11 70689632 70689731 -78093741 + L1ME LINE L1 5486 5581 -583 1915 174 6 31 chr11 70689760 70690117 -78093355 + MLT2D LTR ERVL 2 349 -65 253 102 34 34 chr11 70690125 70690184 -78093288 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 296 159 74 0 chr11 70690186 70690246 -78093226 + MLT2D LTR ERVL 358 414 0 261 61 0 0 chr11 70690310 70690343 -78093129 + L1M1 LINE L1 5690 5722 -583 21 36 0 0 chr11 70690346 70690374 -78093098 + AT_rich Low_complexity Low_complexity 1 28 0 2284 112 7 0 chr11 70690374 70690678 -78092794 + AluSx SINE Alu 1 306 -6 1379 139 9 23 chr11 70690683 70690898 -78092574 + AluJo SINE Alu 1 212 -100 1763 94 5 0 chr11 70691000 70691223 -78092249 - AluSq SINE Alu -89 224 1 479 303 75 5 chr11 70691224 70691412 -78092060 - MIR SINE MIR -15 247 47 2927 135 9 2 chr11 70692554 70693021 -78090451 + HERV15 LTR ERV1 8266 8735 0 3021 94 58 13 chr11 70693022 70693488 -78089984 + LTR15 LTR ERV1 1 487 -6 1578 114 0 0 chr11 70693492 70693693 -78089779 + AluSg/x SINE Alu 93 293 -17 1209 133 12 0 chr11 70693693 70693859 -78089613 + AluSg/x SINE Alu 132 299 -11 2082 135 0 0 chr11 70693892 70694173 -78089299 + AluSq SINE Alu 15 295 -18 731 229 7 13 chr11 70694302 70694455 -78089017 - MLT1A2 LTR MaLR -222 152 1 988 176 0 0 chr11 70694519 70694678 -78088794 - AluJb SINE Alu -7 305 147 2288 100 0 3 chr11 70695023 70695313 -78088159 + AluY SINE Alu 7 295 -16 1218 201 4 8 chr11 70695323 70695557 -78087915 + L1MC/D LINE L1 5433 5665 -2120 1059 147 0 3 chr11 70696177 70696482 -78086990 + (TGGA)n Simple_repeat Simple_repeat 2 305 0 791 214 123 5 chr11 70696595 70696782 -78086690 + MER3 DNA MER1_type 1 209 0 255 226 32 0 chr11 70696727 70696789 -78086683 - MER3 DNA MER1_type -105 104 41 * 2365 109 3 0 chr11 70698661 70698972 -78084500 - AluSx SINE Alu 0 312 1 354 185 0 0 chr11 70699004 70699069 -78084403 - MIR SINE MIR -12 250 186 1888 189 130 59 chr11 70699427 70699890 -78083582 - MLT1F1 LTR MaLR 0 567 60 1818 146 0 31 chr11 70699890 70700178 -78083294 - AluJb SINE Alu -30 282 4 1888 189 130 59 chr11 70700178 70700243 -78083229 - MLT1F1 LTR MaLR -507 60 1 330 26 0 0 chr11 70700366 70700405 -78083067 + (TC)n Simple_repeat Simple_repeat 1 39 0 243 0 0 0 chr11 70700404 70700431 -78083041 + (CA)n Simple_repeat Simple_repeat 1 27 0 * 300 297 70 23 chr11 70700563 70700691 -78082781 - MLT1K LTR MaLR -331 257 124 19687 78 9 6 chr11 70701270 70703422 -78080050 - HERVK11 LTR ERVK -676 7277 5115 2573 70 0 0 chr11 70703422 70703724 -78079748 - AluY SINE Alu -9 302 1 19687 78 9 6 chr11 70703724 70704245 -78079227 - HERVK11 LTR ERVK -2838 5115 4597 340 342 87 0 chr11 70705356 70705505 -78077967 - MIR SINE MIR -55 207 46 254 301 103 7 chr11 70705968 70706114 -78077358 - MIR SINE MIR -24 238 79 214 353 139 23 chr11 70706326 70706714 -78076758 + L2 LINE L2 2427 2859 -455 3283 136 52 17 chr11 70706826 70706859 -78076613 + LTR26 LTR ERV1 4 34 -569 8460 51 9 0 chr11 70706859 70707819 -78075653 + LTR5 LTR ERVK 1 969 0 3283 136 52 17 chr11 70707819 70708365 -78075107 + LTR26 LTR ERV1 34 603 0 2177 120 7 0 chr11 70708620 70708920 -78074552 - AluSg SINE Alu -8 302 1 232 133 33 33 chr11 70709021 70709081 -78074391 - L1MC4 LINE L1 -1339 6703 6644 846 164 121 0 chr11 70709102 70709242 -78074230 - FRAM SINE Alu -25 151 1 858 138 0 0 chr11 70709256 70709372 -78074100 + AluJb SINE Alu 1 116 -196 339 316 136 24 chr11 70709935 70710141 -78073331 + MIR SINE MIR 23 251 -11 333 299 117 7 chr11 70710179 70710333 -78073139 + L3 LINE CR1 1295 1465 -112 22 0 0 0 chr11 70711096 70711118 -78072354 + AT_rich Low_complexity Low_complexity 1 22 0 347 164 0 0 chr11 70713393 70713454 -78070018 + LTR23-int LTR ERV1 1509 1569 -3554 1826 171 0 17 chr11 70713494 70713786 -78069686 + AluJo SINE Alu 1 287 -25 250 125 0 0 chr11 70713914 70713954 -78069518 + LTR23-int LTR ERV1 1614 1653 -3470 468 133 0 0 chr11 70713954 70714029 -78069443 + AluS SINE Alu 225 299 -13 1249 197 18 70 chr11 70714093 70714467 -78069005 + LTR23-int LTR ERV1 1672 2064 -4267 2382 92 3 7 chr11 70714467 70714773 -78068699 + AluSx SINE Alu 1 305 -7 1249 197 18 70 chr11 70714773 70714838 -78068634 + LTR23-int LTR ERV1 2064 2131 -4200 2223 93 10 14 chr11 70714838 70715128 -78068344 + AluSc SINE Alu 1 289 -20 1249 197 18 70 chr11 70715128 70715226 -78068246 + LTR23-int LTR ERV1 2131 3607 -2724 900 118 0 0 chr11 70715227 70715346 -78068126 + FRAM SINE Alu 38 156 -20 2587 174 38 71 chr11 70715346 70715437 -78068035 + LTR23-int LTR ERV1 2179 2271 -2852 2208 120 3 0 chr11 70715437 70715736 -78067736 + AluSx SINE Alu 1 300 -12 2587 174 38 71 chr11 70715736 70716213 -78067259 + LTR23-int LTR ERV1 2271 2718 -2405 2358 92 0 0 chr11 70716213 70716508 -78066964 + AluSg SINE Alu 1 295 -15 2587 174 38 71 chr11 70716508 70716703 -78066769 + LTR23-int LTR ERV1 2718 2918 -2205 2108 102 31 34 chr11 70716721 70717015 -78066457 + AluSx SINE Alu 1 293 -19 854 129 8 0 chr11 70717017 70717141 -78066331 - FRAM SINE Alu -20 156 32 267 169 0 77 chr11 70717147 70717212 -78066260 + AluJo SINE Alu 84 143 -159 330 99 26 126 chr11 70717216 70717227 -78066245 + LTR23-int LTR ERV1 2891 2901 -2222 765 177 8 0 chr11 70717227 70717357 -78066115 - FLAM_C SINE Alu -2 131 1 330 99 26 126 chr11 70717357 70717421 -78066051 + LTR23-int LTR ERV1 2901 2946 -2177 2366 84 6 6 chr11 70717421 70717732 -78065740 - AluY SINE Alu 0 311 1 330 99 26 126 chr11 70717732 70717806 -78065666 + LTR23-int LTR ERV1 2946 3026 -2097 1894 131 7 4 chr11 70717807 70718081 -78065391 - AluSx SINE Alu -16 296 22 22 0 0 0 chr11 70718473 70718495 -78064977 + GC_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr11 70718534 70718560 -78064912 + GC_rich Low_complexity Low_complexity 1 26 0 895 256 105 48 chr11 70719549 70719986 -78063486 + L2 LINE L2 2851 3312 -1 194 208 42 21 chr11 70721225 70721273 -78062199 + MIR3 SINE MIR 144 192 -16 237 344 24 16 chr11 70721588 70721713 -78061759 + MIR3 SINE MIR 35 160 -48 336 282 19 0 chr11 70721758 70721861 -78061611 - MIR SINE MIR -48 214 110 981 209 0 0 chr11 70723312 70723693 -78059779 + (TGGA)n Simple_repeat Simple_repeat 1 381 0 2099 95 37 0 chr11 70723964 70724237 -78059235 + AluSg SINE Alu 9 291 -19 1196 144 0 11 chr11 70724312 70724336 -78059136 - AluSg/x SINE Alu -3 307 284 240 86 0 0 chr11 70724336 70724371 -78059101 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 1196 144 0 11 chr11 70724371 70724526 -78058946 - AluSg/x SINE Alu -26 284 130 1879 126 7 18 chr11 70724537 70724814 -78058658 - AluSq SINE Alu -11 302 29 253 215 31 0 chr11 70724865 70724930 -78058542 + L1MA9 LINE L1 6221 6287 -25 227 275 42 33 chr11 70725035 70725155 -78058317 + L1P LINE L1 3343 3463 -2683 1548 182 8 0 chr11 70725182 70725435 -78058037 + AluJo SINE Alu 1 255 -57 1638 112 75 0 chr11 70725435 70725702 -78057770 - MER4B LTR ERV1 -321 289 3 1298 128 38 9 chr11 70725705 70725916 -78057556 - MER4B-int LTR ERV1 -1 6757 6541 1105 188 0 0 chr11 70725918 70726099 -78057373 - AluSg/x SINE Alu -5 305 125 233 0 62 0 chr11 70726479 70726511 -78056961 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 5700 97 9 99 chr11 70726511 70726541 -78056931 - MER4B-int LTR ERV1 -262 6496 6465 6968 53 26 0 chr11 70726541 70727415 -78056057 + MER11D LTR ERVK 1 897 0 5700 97 9 99 chr11 70727415 70727771 -78055701 - MER4B-int LTR ERV1 -293 6465 6078 2595 91 11 16 chr11 70727771 70728145 -78055327 + THE1C LTR MaLR 4 375 0 5700 97 9 99 chr11 70728145 70728485 -78054987 - MER4B-int LTR ERV1 -680 6078 5709 1934 139 14 0 chr11 70728485 70728765 -78054707 + AluJb SINE Alu 1 284 -28 5700 97 9 99 chr11 70728765 70728879 -78054593 - MER4B-int LTR ERV1 -1049 5709 5778 2299 107 0 0 chr11 70728879 70729168 -78054304 - AluSg SINE Alu -21 289 1 5700 97 9 99 chr11 70729168 70729453 -78054019 - MER4B-int LTR ERV1 -979 5779 5470 1577 113 0 0 chr11 70729502 70729705 -78053767 - AluY SINE Alu -108 203 1 1070 122 0 30 chr11 70729705 70729862 -78053610 - AluSg/x SINE Alu -5 305 152 3318 141 47 62 chr11 70729998 70730283 -78053189 + LTR1 LTR ERV1 1 289 -496 2812 88 41 56 chr11 70730283 70730748 -78052724 - LTR22A LTR ERVK 0 458 1 3318 141 47 62 chr11 70730748 70731301 -78052171 + LTR1 LTR ERV1 289 785 0 290 313 26 82 chr11 70731422 70731568 -78051904 + MER110-int LTR ERV1 2291 2425 -2222 2341 78 10 3 chr11 70731568 70731862 -78051610 - AluSq SINE Alu -17 296 1 290 313 26 82 chr11 70731862 70731910 -78051562 + MER110-int LTR ERV1 2425 2474 -2173 23 0 0 0 chr11 70732065 70732088 -78051384 + AT_rich Low_complexity Low_complexity 1 23 0 2162 89 10 43 chr11 70732564 70732867 -78050605 - AluSq SINE Alu -20 293 1 2541 75 3 0 chr11 70733067 70733372 -78050100 - AluSq SINE Alu -6 307 2 434 179 228 0 chr11 70733590 70733713 -78049759 + LTR23 LTR ERV1 1 151 -286 2465 72 0 3 chr11 70733768 70734060 -78049412 - AluY SINE Alu -20 291 1 254 238 63 0 chr11 70734194 70734257 -78049215 - MER65-int LTR ERV1 -3226 2720 2654 * 486 137 0 0 chr11 70734233 70734306 -78049166 - MER65-int LTR ERV1 -3564 1307 1235 1341 129 98 35 chr11 70734882 70735169 -78048303 + THE1C LTR MaLR 1 305 -70 1320 139 14 14 chr11 70735172 70735388 -78048084 - AluSx SINE Alu -45 267 52 242 327 13 26 chr11 70735495 70735648 -78047824 + L1M4 LINE L1 2197 2347 -3799 2190 126 10 0 chr11 70735659 70735968 -78047504 - AluSx SINE Alu 0 312 1 198 0 0 0 chr11 70735993 70736015 -78047457 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 730 194 29 0 chr11 70736038 70736177 -78047295 + FAM SINE Alu 1 40 -9 567 315 105 44 chr11 70736189 70736332 -78047140 + L1M4 LINE L1 2388 2521 -3625 474 18 0 0 chr11 70736332 70736387 -78047085 + (TG)n Simple_repeat Simple_repeat 2 56 0 567 315 105 44 chr11 70736387 70736666 -78046806 + L1M4 LINE L1 2521 2835 -3311 2203 121 0 0 chr11 70736689 70736995 -78046477 - AluSg SINE Alu -4 306 1 2225 95 0 3 chr11 70737053 70737348 -78046124 - AluY SINE Alu -9 302 9 1634 178 0 4 chr11 70737366 70737635 -78045837 - AluJb SINE Alu -44 268 1 760 259 12 0 chr11 70737640 70737899 -78045573 - L1M4 LINE L1 -985 5161 4900 1904 159 49 35 chr11 70737899 70738269 -78045203 - THE1C LTR MaLR 0 375 1 7587 133 92 56 chr11 70738269 70739794 -78043678 - THE1C-int LTR MaLR 0 1580 1 1870 173 47 25 chr11 70739794 70739959 -78043513 - THE1C LTR MaLR 0 375 215 198 0 0 0 chr11 70739959 70739981 -78043491 + (GA)n Simple_repeat Simple_repeat 2 23 0 1870 173 47 25 chr11 70739981 70740002 -78043470 - THE1C LTR MaLR -160 215 196 1968 125 47 0 chr11 70740002 70740298 -78043174 - AluSx SINE Alu 0 312 3 1870 173 47 25 chr11 70740298 70740475 -78042997 - THE1C LTR MaLR -179 196 3 2122 117 24 56 chr11 70740532 70740850 -78042622 + L1MB3 LINE L1 5819 6125 -58 2220 94 3 0 chr11 70740850 70741149 -78042323 + AluSg1 SINE Alu 10 309 0 2122 117 24 56 chr11 70741149 70741206 -78042266 + L1MB3 LINE L1 6125 6182 -1 492 136 0 0 chr11 70741233 70741299 -78042173 + AluS SINE Alu 4 69 -244 2227 91 7 3 chr11 70741555 70741853 -78041619 + AluSx SINE Alu 1 299 -13 678 296 12 21 chr11 70742939 70743179 -78040293 + L1M4 LINE L1 4530 4767 -1379 458 319 46 85 chr11 70743185 70743514 -78039958 - L1M4 LINE L1 -3173 2973 2658 1954 118 0 11 chr11 70743643 70743930 -78039542 - AluSx SINE Alu 0 312 29 463 193 0 74 chr11 70744158 70744197 -78039275 + L1MA6 LINE L1 6172 6212 -88 1633 197 3 0 chr11 70744197 70744491 -78038981 - AluJo SINE Alu -17 295 1 463 193 0 74 chr11 70744491 70744586 -78038886 + L1MA6 LINE L1 6212 6296 -4 8752 63 11 37 chr11 70744662 70745877 -78037595 + SVA Other Other 204 1386 0 238 203 30 90 chr11 70745880 70746013 -78037459 + L1MC4 LINE L1 7918 8042 0 198 103 0 0 chr11 70746025 70746054 -78037418 + (A)n Simple_repeat Simple_repeat 1 29 0 234 158 0 0 chr11 70746149 70746187 -78037285 - MER20 DNA MER1_type 0 219 182 814 185 179 0 chr11 70746195 70746379 -78037093 - MER20 DNA MER1_type -2 217 1 357 340 85 27 chr11 70746379 70746567 -78036905 - L1 LINE L1 -1146 5000 4802 334 206 76 3 chr11 70746596 70746719 -78036753 + MLT1J2 LTR MaLR 1 166 -284 198 0 0 0 chr11 70746750 70746772 -78036700 + (TC)n Simple_repeat Simple_repeat 1 22 0 252 200 77 15 chr11 70746855 70746920 -78036552 - MER31-int LTR ERV1 -242 4694 4626 656 126 11 0 chr11 70747125 70747220 -78036252 + AluSg/x SINE Alu 197 292 -17 1421 152 81 7 chr11 70747220 70747503 -78035969 + L1MC3 LINE L1 5756 6059 -1726 2152 109 0 0 chr11 70747509 70747802 -78035670 - AluSx SINE Alu -3 309 17 749 160 83 24 chr11 70747819 70747988 -78035484 - FRAM SINE Alu 0 176 1 3554 145 55 66 chr11 70747988 70748583 -78034889 + L1MC3 LINE L1 6126 6726 -1059 1923 129 0 43 chr11 70748583 70748909 -78034563 - AluSx SINE Alu 0 312 1 3554 145 55 66 chr11 70748909 70748920 -78034552 + L1MC3 LINE L1 6726 6736 -1049 1622 176 0 36 chr11 70748920 70749227 -78034245 - AluJo SINE Alu -16 296 1 3554 145 55 66 chr11 70749227 70749425 -78034047 + L1MC3 LINE L1 6736 6922 -863 351 78 0 0 chr11 70749425 70749476 -78033996 + (TCTA)n Simple_repeat Simple_repeat 3 53 0 315 58 19 39 chr11 70749484 70749536 -78033936 + MLT2C1 LTR ERVL 347 397 0 401 176 0 0 chr11 70749536 70749604 -78033868 + L1MC3 LINE L1 7683 7750 -35 1799 126 0 63 chr11 70749611 70749940 -78033532 - AluSx SINE Alu 0 310 1 360 237 104 22 chr11 70749941 70750076 -78033396 + Charlie8 DNA MER1_type 145 290 -2127 238 220 20 0 chr11 70750071 70750121 -78033351 - AluJb SINE Alu -70 232 182 * 219 385 31 0 chr11 70750939 70751069 -78032403 - L2 LINE L2 -526 2788 2655 1537 142 97 15 chr11 70751142 70751409 -78032063 - AluJo SINE Alu -23 289 1 1336 193 22 121 chr11 70751413 70751818 -78031654 + MLT1A1 LTR MaLR 1 365 0 481 309 196 16 chr11 70751886 70752249 -78031223 - LTR16B LTR ERVL -11 439 12 185 258 82 62 chr11 70752411 70752508 -78030964 - L2 LINE L2 -20 3252 3154 360 348 86 5 chr11 70753194 70753404 -78030068 + MIR SINE MIR 3 229 -33 3882 187 107 14 chr11 70753658 70754793 -78028679 + L1MA7 LINE L1 5082 6291 0 231 200 12 71 chr11 70755117 70755202 -78028270 + C-rich Low_complexity Low_complexity 2 81 0 192 333 0 0 chr11 70762439 70762505 -78020967 - MIR SINE MIR -118 144 79 685 212 103 0 chr11 70763517 70763701 -78019771 + MIR SINE MIR 10 212 -50 258 32 0 0 chr11 70763919 70763950 -78019522 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 2123 60 36 36 chr11 70763963 70764264 -78019208 + AluSg SINE Alu 1 301 -9 381 358 95 49 chr11 70764265 70764611 -78018861 - L2 LINE L2 -18 3254 2893 4101 87 30 0 chr11 70765082 70765620 -78017852 - MER41A LTR ERV1 0 554 1 496 171 0 0 chr11 70765676 70765752 -78017720 - AluJ/FLAM SINE Alu -227 85 10 933 208 1 18 chr11 70765767 70765994 -78017478 - MLT1B LTR MaLR -22 368 139 491 240 10 0 chr11 70765999 70766103 -78017369 + FLAM_A SINE Alu 1 105 -37 310 308 77 13 chr11 70766612 70766846 -78016626 + L2 LINE L2 2842 3090 -182 339 289 197 23 chr11 70767997 70768618 -78014854 + L2 LINE L2 2550 3291 -22 320 304 157 11 chr11 70769980 70770171 -78013301 + L2 LINE L2 2981 3199 -73 432 287 26 0 chr11 70770183 70770298 -78013174 + MIR SINE MIR 69 186 -76 3474 150 19 88 chr11 70770644 70770755 -78012717 + L1MB3 LINE L1 5423 5540 -643 1866 143 3 13 chr11 70770755 70771063 -78012409 - AluJo SINE Alu -7 305 1 3474 150 19 88 chr11 70771063 70771179 -78012293 + L1MB3 LINE L1 5540 5662 -521 237 33 0 0 chr11 70771179 70771209 -78012263 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1889 104 37 0 chr11 70771210 70771478 -78011994 - AluSx SINE Alu -34 278 1 3474 150 19 88 chr11 70771478 70771961 -78011511 + L1MB3 LINE L1 5662 6177 -6 4802 51 5 5 chr11 70771961 70772552 -78010920 - LTR10C LTR ERV1 0 591 1 3474 150 19 88 chr11 70772552 70772604 -78010868 + L1MB3 LINE L1 6177 6135 -48 1922 123 3 3 chr11 70772604 70772934 -78010538 + AluSx SINE Alu 1 330 0 3474 150 19 88 chr11 70772934 70772976 -78010496 + L1MB3 LINE L1 6134 6177 -6 193 246 82 0 chr11 70773074 70773135 -78010337 + MIR SINE MIR 31 96 -112 1404 167 61 0 chr11 70773506 70773751 -78009721 - AluJo SINE Alu -52 260 1 31 0 0 0 chr11 70773913 70773944 -78009528 + AT_rich Low_complexity Low_complexity 1 31 0 600 100 0 0 chr11 70773944 70774024 -78009448 + MADE1 DNA Mariner 1 80 0 816 153 0 0 chr11 70774026 70774144 -78009328 - AluJb SINE Alu -191 121 4 2033 127 13 3 chr11 70774498 70774806 -78008666 + AluSq SINE Alu 1 311 -2 357 254 0 45 chr11 70774871 70774981 -78008491 + MER31-int LTR ERV1 2776 2880 -3796 1262 215 63 30 chr11 70775135 70775509 -78007963 + MER31-int LTR ERV1 1197 1557 -4774 2431 50 0 35 chr11 70775509 70775826 -78007646 - AluY SINE Alu -5 306 1 1262 215 63 30 chr11 70775826 70776079 -78007393 + MER31-int LTR ERV1 1557 3120 -3211 1034 223 105 98 chr11 70776126 70776310 -78007162 + MER31-int LTR ERV1 1488 1669 -4929 1732 149 3 44 chr11 70776310 70776631 -78006841 + AluJb SINE Alu 5 312 0 1034 223 105 98 chr11 70776631 70777107 -78006365 + MER31-int LTR ERV1 1669 2140 -4458 1857 118 27 24 chr11 70777107 70777403 -78006069 - AluSq SINE Alu -16 297 1 1034 223 105 98 chr11 70777403 70777497 -78005975 + MER31-int LTR ERV1 2140 2232 -4366 2137 109 0 3 chr11 70777497 70777799 -78005673 + AluY SINE Alu 1 301 -10 1034 223 105 98 chr11 70777799 70778066 -78005406 + MER31-int LTR ERV1 2232 3730 -2868 1265 239 112 48 chr11 70778116 70778620 -78004852 + MER31-int LTR ERV1 2608 3078 -1858 2410 85 0 0 chr11 70778620 70778927 -78004545 + AluY SINE Alu 1 307 -4 1265 239 112 48 chr11 70778927 70779005 -78004467 + MER31-int LTR ERV1 3078 3150 -1786 1765 154 14 10 chr11 70779005 70779297 -78004175 - AluJb SINE Alu -19 293 1 1265 239 112 48 chr11 70779297 70779356 -78004116 + MER31-int LTR ERV1 3150 3270 -1666 6207 126 26 23 chr11 70779406 70780400 -78003072 - LTR13 LTR ERVK 0 1007 11 1927 133 0 7 chr11 70780400 70780694 -78002778 + AluSx SINE Alu 12 303 -9 1973 132 19 46 chr11 70780831 70781202 -78002270 + MER4E LTR ERV1 1 361 -405 1735 145 3 2 chr11 70781316 70781612 -78001860 - L1PB1 LINE L1 -96 6055 5763 278 157 0 91 chr11 70781614 70781811 -78001661 + (TA)n Simple_repeat Simple_repeat 2 180 0 10028 220 5 9 chr11 70781830 70784161 -77999311 - L1PB1 LINE L1 -1056 5090 2769 2026 98 0 4 chr11 70784161 70784436 -77999036 - AluSq SINE Alu -39 274 1 466 101 14 0 chr11 70784535 70784604 -77998868 - L1MB8 LINE L1 -6 6172 6103 192 211 0 0 chr11 70784976 70785014 -77998458 + L2 LINE L2 3226 3263 -9 347 287 120 30 chr11 70785025 70785192 -77998280 - MIR SINE MIR -9 253 72 224 351 9 26 chr11 70786245 70786359 -77997113 - L2 LINE L2 -83 3189 3078 187 328 15 0 chr11 70786614 70786681 -77996791 + MIR SINE MIR 93 160 -102 323 132 0 0 chr11 70787134 70787187 -77996285 - MER4A LTR ERV1 0 664 612 2389 55 0 0 chr11 70787187 70787478 -77995994 + AluY SINE Alu 21 311 0 2091 121 0 7 chr11 70787506 70787804 -77995668 + AluSx SINE Alu 1 296 -16 893 123 7 14 chr11 70787804 70787944 -77995528 - MER4B LTR ERV1 -45 565 426 2094 89 13 26 chr11 70787944 70788247 -77995225 + AluSq SINE Alu 1 299 -14 309 277 84 0 chr11 70788252 70788335 -77995137 - L1MC4 LINE L1 -1339 6703 6614 291 212 0 17 chr11 70788335 70788404 -77995068 - MER4B LTR ERV1 -171 439 382 354 149 70 14 chr11 70788421 70788535 -77994937 - MER4A LTR ERV1 -223 441 263 2191 87 14 0 chr11 70788561 70788849 -77994623 + AluSp SINE Alu 7 298 -15 457 114 34 23 chr11 70788853 70788941 -77994531 - MER4A LTR ERV1 -575 89 1 734 163 0 17 chr11 70790012 70790311 -77993161 + (CA)n Simple_repeat Simple_repeat 1 293 0 690 201 2 2 chr11 70790355 70790899 -77992573 + (CA)n Simple_repeat Simple_repeat 1 544 0 584 216 2 2 chr11 70791173 70791773 -77991699 + (CA)n Simple_repeat Simple_repeat 1 599 0 630 164 0 16 chr11 70791808 70791991 -77991481 + (CA)n Simple_repeat Simple_repeat 1 180 0 447 219 0 0 chr11 70792006 70792184 -77991288 + (CA)n Simple_repeat Simple_repeat 1 178 0 569 237 14 7 chr11 70793391 70793530 -77989942 - MIR SINE MIR -66 196 57 306 288 8 25 chr11 70797105 70797223 -77986249 + MIR3 SINE MIR 71 186 -22 266 267 70 12 chr11 70798041 70798127 -77985345 + MIR SINE MIR 41 131 -131 499 208 67 8 chr11 70798127 70798247 -77985225 + MER65B LTR ERV1 1 127 -404 636 134 41 0 chr11 70798627 70798724 -77984748 - AluJ/FLAM SINE Alu -210 102 2 606 251 35 40 chr11 70798730 70798821 -77984651 - MER31-int LTR ERV1 -1139 3797 3707 2076 120 3 3 chr11 70798821 70799130 -77984342 - AluSx SINE Alu -3 309 1 606 251 35 40 chr11 70799130 70799144 -77984328 - MER31-int LTR ERV1 -1229 3707 3694 206 0 69 0 chr11 70799144 70799173 -77984299 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 606 251 35 40 chr11 70799173 70799293 -77984179 - MER31-int LTR ERV1 -1242 3694 3572 2136 123 37 0 chr11 70799294 70799668 -77983804 - MER4E LTR ERV1 0 766 379 2153 104 13 3 chr11 70800223 70800532 -77982940 + AluSx SINE Alu 1 312 0 411 225 78 54 chr11 70800588 70800717 -77982755 + MIR SINE MIR 49 180 -82 478 175 0 0 chr11 70801157 70801237 -77982235 - L2 LINE L2 0 3313 3234 387 332 134 0 chr11 70801303 70801550 -77981922 + L2 LINE L2 2993 3272 0 244 218 23 46 chr11 70802299 70802386 -77981086 + (CGGG)n Simple_repeat Simple_repeat 2 86 0 195 42 0 0 chr11 70802500 70802524 -77980948 + (CTGGGG)n Simple_repeat Simple_repeat 6 29 0 339 299 26 0 chr11 70802738 70802855 -77980617 - MIR SINE MIR -56 152 33 351 225 0 45 chr11 70804938 70805049 -77978423 + CT-rich Low_complexity Low_complexity 1 106 0 180 128 51 0 chr11 70805573 70805612 -77977860 - L2 LINE L2 -205 3067 3027 2160 116 3 3 chr11 70806006 70806317 -77977155 + AluSx SINE Alu 1 311 -1 450 267 117 0 chr11 70806610 70806798 -77976674 + MIR SINE MIR 23 237 -25 345 280 0 0 chr11 70807105 70807340 -77976132 + (TGGA)n Simple_repeat Simple_repeat 1 235 0 297 248 7 20 chr11 70807379 70807532 -77975940 + (TGGA)n Simple_repeat Simple_repeat 4 154 0 191 227 0 23 chr11 70807559 70807647 -77975825 + (TGGA)n Simple_repeat Simple_repeat 3 88 0 267 31 0 0 chr11 70807662 70807694 -77975778 + (TG)n Simple_repeat Simple_repeat 2 33 0 1543 182 7 25 chr11 70807694 70807980 -77975492 - AluJo SINE Alu -27 285 5 845 194 29 0 chr11 70808231 70808401 -77975071 + L1M4 LINE L1 5422 5596 -588 1681 127 0 0 chr11 70808511 70808748 -77974724 + AluSx SINE Alu 57 293 -19 456 170 58 39 chr11 70808909 70808921 -77974551 + LOR1-int LTR ERV1 4462 4472 -2126 995 96 0 22 chr11 70808921 70809057 -77974415 - FLAM_C SINE Alu 0 133 1 2074 120 7 3 chr11 70809067 70809368 -77974104 - AluSx SINE Alu -10 302 1 456 170 58 39 chr11 70809368 70809522 -77973950 + LOR1-int LTR ERV1 4480 4736 -1862 706 177 28 99 chr11 70809649 70809830 -77973642 + LOR1-int LTR ERV1 3786 3953 -4167 862 118 0 22 chr11 70809978 70810114 -77973358 + FLAM_C SINE Alu 1 133 -10 508 168 178 0 chr11 70810176 70810283 -77973189 + LOR1-int LTR ERV1 3950 4075 -4045 329 143 0 0 chr11 70810285 70810334 -77973138 + LOR1-int LTR ERV1 4713 4761 -1915 459 156 56 0 chr11 70810335 70810425 -77973047 - AluSp/q SINE Alu 0 313 219 409 75 0 0 chr11 70810474 70810527 -77972945 + MER4D-int LTR ERV1 4711 4763 -1913 1096 133 0 0 chr11 70810528 70810694 -77972778 - AluSp SINE Alu -2 311 146 1601 203 55 33 chr11 70810732 70811048 -77972424 + MER4D-int LTR ERV1 6384 6711 -47 2190 119 0 0 chr11 70811048 70811358 -77972114 + AluSx SINE Alu 1 310 -2 1601 203 55 33 chr11 70811358 70811405 -77972067 + MER4D-int LTR ERV1 6711 6755 -3 308 206 55 0 chr11 70811423 70811496 -77971976 + MER4D LTR ERV1 11 87 -785 2274 87 0 13 chr11 70811506 70811845 -77971627 + AluY SINE Alu 1 311 0 3122 159 2 0 chr11 70811846 70812336 -77971136 + MER41D LTR ERV1 67 557 0 1462 53 5 5 chr11 70812527 70812714 -77970758 - AluY SINE Alu -8 303 117 3075 117 47 125 chr11 70813243 70813824 -77969648 + MER51A LTR ERV1 1 523 -111 2134 99 0 59 chr11 70813824 70814147 -77969325 + AluSx SINE Alu 1 304 -8 3075 117 47 125 chr11 70814147 70814243 -77969229 + MER51A LTR ERV1 523 625 -9 314 277 77 15 chr11 70814712 70814844 -77968628 - MIR3 SINE MIR -8 200 60 926 185 7 0 chr11 70815501 70815652 -77967820 + FRAM SINE Alu 1 152 -14 2087 117 7 0 chr11 70815654 70815945 -77967527 - AluSx SINE Alu -12 300 8 810 224 13 56 chr11 70816286 70816372 -77967100 - MIR SINE MIR -36 226 138 2064 124 10 0 chr11 70816372 70816678 -77966794 - AluSx SINE Alu -3 309 1 810 224 13 56 chr11 70816678 70816823 -77966649 - MIR SINE MIR -124 138 5 865 161 6 46 chr11 70817761 70817916 -77965556 - LTR23-int LTR ERV1 -4811 1520 1371 4224 68 47 0 chr11 70817916 70818445 -77965027 - MER41A LTR ERV1 0 554 1 865 161 6 46 chr11 70818445 70818463 -77965009 - LTR23-int LTR ERV1 -4960 1371 1354 354 212 53 53 chr11 70818536 70818668 -77964804 - LTR23-int LTR ERV1 -4917 1414 1283 335 209 0 0 chr11 70818668 70818735 -77964737 - tRNA-Glu-GAG tRNA tRNA 0 75 9 338 213 13 13 chr11 70818743 70818818 -77964654 - LTR23-int LTR ERV1 -5136 1195 1121 2081 100 45 0 chr11 70819362 70819653 -77963819 - AluSq SINE Alu -9 304 1 1208 245 23 39 chr11 70819882 70820349 -77963123 - LTR23-int LTR ERV1 -4508 615 15 2029 108 7 0 chr11 70820392 70820671 -77962801 + AluSg SINE Alu 7 287 -23 774 140 52 78 chr11 70820711 70820863 -77962609 - LTR23 LTR ERV1 -29 408 261 1798 160 7 0 chr11 70820863 70821156 -77962316 - AluJb SINE Alu -17 295 1 774 140 52 78 chr11 70821156 70821196 -77962276 - LTR23 LTR ERV1 -176 261 221 616 118 0 49 chr11 70821198 70821300 -77962172 + FLAM_A SINE Alu 32 128 -14 1132 138 81 0 chr11 70821300 70821510 -77961962 - LTR23 LTR ERV1 -210 227 1 2456 77 0 0 chr11 70821589 70821900 -77961572 - AluY SINE Alu 0 311 1 551 231 99 0 chr11 70822339 70822460 -77961012 - AluJo SINE Alu -176 136 4 240 304 25 13 chr11 70822577 70822656 -77960816 + MLT1K LTR MaLR 4 83 -505 349 213 227 128 chr11 70822709 70822895 -77960577 + MLT1K LTR MaLR 184 350 -238 2054 109 41 0 chr11 70822895 70823188 -77960284 + AluSx SINE Alu 1 305 -7 349 213 227 128 chr11 70823188 70823354 -77960118 + MLT1K LTR MaLR 350 571 -17 269 324 84 6 chr11 70823869 70824048 -77959424 + MLT1J LTR MaLR 319 511 0 2198 109 0 6 chr11 70824227 70824539 -77958933 + AluSx SINE Alu 1 310 -2 2231 145 71 0 chr11 70824549 70824942 -77958530 + L1MB7 LINE L1 5754 6174 -10 1815 154 0 13 chr11 70824944 70825243 -77958229 + AluJo SINE Alu 1 295 -17 294 255 51 10 chr11 70825578 70825676 -77957796 + MIR SINE MIR 111 212 -50 489 238 78 12 chr11 70826134 70826424 -77957048 - MER34B LTR ERV1 0 565 230 328 122 0 0 chr11 70826703 70826752 -77956720 + MER41D LTR ERV1 14 62 -495 2067 107 10 0 chr11 70826756 70827046 -77956426 - AluSx SINE Alu -13 299 7 641 143 10 0 chr11 70827052 70827150 -77956322 - FLAM_C SINE Alu -10 133 35 322 136 0 0 chr11 70827172 70827216 -77956256 + Alu SINE Alu 1 44 -264 * 1851 162 37 9 chr11 70827215 70827356 -77956116 + MER41D LTR ERV1 222 358 -199 333 0 0 0 chr11 70827356 70827393 -77956079 + (TA)n Simple_repeat Simple_repeat 2 38 0 1851 162 37 9 chr11 70827393 70827578 -77955894 + MER41D LTR ERV1 358 557 0 2717 87 3 3 chr11 70827604 70827972 -77955500 + THE1C LTR MaLR 1 368 -7 301 304 152 0 chr11 70828069 70828207 -77955265 + MER41D-int LTR ERV1 230 388 -7368 1174 147 128 12 chr11 70828321 70828572 -77954900 + MER41D-int LTR ERV1 939 1218 -568 751 189 14 7 chr11 70828555 70828703 -77954769 + MER41D-int LTR ERV1 1500 1648 -6472 * 879 96 60 12 chr11 70829223 70829389 -77954083 + MER41D-int LTR ERV1 1729 1902 -6218 961 150 7 0 chr11 70829489 70829636 -77953836 - AluSq/x SINE Alu -164 148 1 276 309 119 18 chr11 70829636 70829914 -77953558 - L1M4 LINE L1 -3384 2762 2457 951 217 60 129 chr11 70829916 70830081 -77953391 + MLT1A2 LTR MaLR 1 176 -198 2298 109 0 0 chr11 70830081 70830393 -77953079 + AluSx SINE Alu 1 312 0 951 217 60 129 chr11 70830393 70830646 -77952826 + MLT1A2 LTR MaLR 176 374 0 1484 198 50 8 chr11 70830672 70830996 -77952476 + L1MB1 LINE L1 5493 5784 -400 2254 101 0 0 chr11 70830996 70831292 -77952180 + AluSx SINE Alu 5 300 -12 1484 198 50 8 chr11 70831292 70831584 -77951888 + L1MB1 LINE L1 5784 6062 -122 2045 234 2 28 chr11 70831585 70832020 -77951452 + Harlequin LTR ERV1 3664 4087 -2809 15415 269 35 45 chr11 70832044 70835392 -77948080 - HERVI LTR ERV1 -2293 5492 2238 2148 66 35 0 chr11 70835392 70835679 -77947793 + AluY SINE Alu 1 297 -14 15415 269 35 45 chr11 70835679 70837893 -77945579 - HERVI LTR ERV1 -5547 2238 4 1885 199 58 73 chr11 70837898 70838502 -77944970 - LTR10E LTR ERV1 -21 612 18 498 194 176 0 chr11 70838504 70838612 -77944860 - FLAM_C SINE Alu -16 127 1 610 252 13 0 chr11 70838703 70838858 -77944614 - MLT1F LTR MaLR -6 536 380 565 280 54 64 chr11 70838957 70839346 -77944126 + LTR52 LTR ERVL 1 385 -36 1104 237 65 3 chr11 70840120 70840428 -77943044 + MSTD LTR MaLR 39 365 -31 1120 215 72 0 chr11 70840589 70840854 -77942618 + REP3 LTR ERV 1 284 -278 4070 67 12 5 chr11 70840854 70841877 -77941595 + MER11A LTR ERVK 1 1266 0 4664 93 4 4 chr11 70841877 70842575 -77940897 + HERVK11 LTR ERVK 1 698 -7255 1705 161 26 13 chr11 70842698 70843002 -77940470 - AluSx SINE Alu -4 308 1 34161 92 29 32 chr11 70843156 70849700 -77933772 + HERV9 LTR ERV1 17 4944 0 449 157 280 0 chr11 70849701 70849937 -77933535 + HERV9 LTR ERV1 703 1141 -5755 304 208 14 0 chr11 70849935 70850007 -77933465 + HERV9 LTR ERV1 7503 7575 -824 * 4293 71 10 5 chr11 70849992 70850700 -77932772 + HERV9 LTR ERV1 504 8387 -12 1489 141 110 40 chr11 70850699 70851025 -77932447 + pTR5 LTR ERV1 1677 2025 -413 * 328 255 10 0 chr11 70851025 70851123 -77932349 + LTR30 LTR ERV1 544 642 -80 1392 118 5 5 chr11 70851126 70851347 -77932125 + pTR5 LTR ERV1 172 392 -2046 226 293 90 45 chr11 70851694 70851827 -77931645 + L2 LINE L2 3118 3256 -16 237 315 87 24 chr11 70852013 70852140 -77931332 + MIR SINE MIR 89 223 -39 193 241 0 96 chr11 70852842 70852925 -77930547 + L2 LINE L2 2911 2985 -328 222 364 23 0 chr11 70853452 70853540 -77929932 + MIR SINE MIR 60 149 -113 246 259 0 0 chr11 70853887 70853945 -77929527 - MIR SINE MIR -118 144 87 21 57 0 0 chr11 70854100 70854135 -77929337 + GC_rich Low_complexity Low_complexity 1 35 0 195 42 0 0 chr11 70854252 70854276 -77929196 + (CGGGG)n Simple_repeat Simple_repeat 4 27 0 210 128 0 0 chr11 70854551 70854590 -77928882 + (CGGGG)n Simple_repeat Simple_repeat 5 43 0 228 194 28 56 chr11 70855323 70855395 -77928077 + MIR SINE MIR 67 136 -72 285 267 124 0 chr11 70856179 70856284 -77927188 - MIR3 SINE MIR -7 201 84 208 245 0 0 chr11 70858334 70858387 -77925085 + (CA)n Simple_repeat Simple_repeat 1 53 0 205 277 20 30 chr11 70858485 70858586 -77924886 + (CCCG)n Simple_repeat Simple_repeat 2 101 0 575 251 170 14 chr11 70860213 70860436 -77923036 + MIR SINE MIR 3 260 -2 2221 93 0 0 chr11 70860446 70860746 -77922726 + AluSg SINE Alu 1 300 0 1980 142 0 31 chr11 70860753 70861071 -77922401 + AluSx SINE Alu 3 310 -2 207 0 0 0 chr11 70861779 70861802 -77921670 + (CA)n Simple_repeat Simple_repeat 1 23 0 530 333 131 12 chr11 70863130 70863541 -77919931 + L2 LINE L2 2813 3272 0 252 301 119 17 chr11 70863586 70863762 -77919710 - L2 LINE L2 -154 3118 2925 208 211 0 0 chr11 70864390 70864428 -77919044 - MIR SINE MIR -117 145 108 205 248 88 48 chr11 70864395 70864520 -77918952 - MIR3 SINE MIR -67 141 12 * 224 160 0 80 chr11 70865197 70865247 -77918225 - MIR SINE MIR -56 152 107 182 354 70 13 chr11 70866031 70866189 -77917283 - MIR SINE MIR -60 202 36 385 278 6 11 chr11 70866552 70866732 -77916740 + (TG)n Simple_repeat Simple_repeat 1 179 0 312 266 0 0 chr11 70866732 70866796 -77916676 + (CGTG)n Simple_repeat Simple_repeat 1 64 0 511 244 6 6 chr11 70866806 70866986 -77916486 + (TG)n Simple_repeat Simple_repeat 1 180 0 250 273 68 0 chr11 70866995 70867083 -77916389 + MIR SINE MIR 46 139 -69 241 245 38 0 chr11 70867200 70867253 -77916219 - MIR3 SINE MIR -45 163 109 808 118 15 0 chr11 70867258 70867393 -77916079 + LTR45B LTR ERV1 222 358 -131 2500 44 0 0 chr11 70867968 70868261 -77915211 - AluY SINE Alu -17 294 2 1420 162 6 89 chr11 70868644 70868787 -77914685 + AluJo SINE Alu 1 154 -177 1967 100 68 0 chr11 70868787 70869066 -77914406 + AluSq SINE Alu 5 302 -11 1420 162 6 89 chr11 70869066 70869279 -77914193 + AluJo SINE Alu 154 331 0 788 149 19 26 chr11 70869958 70870112 -77913360 + AluSg/x SINE Alu 160 312 0 274 146 0 0 chr11 70870113 70870154 -77913318 - Alu SINE Alu -260 42 2 495 71 0 0 chr11 70870156 70870226 -77913246 + MSTA LTR MaLR 359 428 0 443 239 77 33 chr11 70870414 70870637 -77912835 - MER93b LTR ERV1 0 373 167 1992 138 0 0 chr11 70870643 70870955 -77912517 + AluSx SINE Alu 1 312 0 919 129 135 16 chr11 70870959 70871152 -77912320 - MSTA LTR MaLR 0 428 213 1535 105 0 0 chr11 70871152 70871352 -77912120 - AluSq SINE Alu -113 200 1 538 121 111 0 chr11 70871352 70871451 -77912021 + MER34 LTR ERV1 433 542 0 252 143 0 0 chr11 70872933 70872975 -77910497 + (CA)n Simple_repeat Simple_repeat 2 43 0 268 156 0 0 chr11 70873718 70873763 -77909709 + MIR SINE MIR 86 130 -132 863 19 19 0 chr11 70875218 70875326 -77908146 + (TTTTA)n Simple_repeat Simple_repeat 5 114 0 1900 86 22 14 chr11 70875326 70875604 -77907868 - AluSx SINE Alu -32 280 1 2432 110 17 6 chr11 70875605 70875959 -77907513 - L1PA11 LINE L1 -10 6164 5807 418 378 40 36 chr11 70875961 70876210 -77907262 - L1M4 LINE L1 -814 5332 5083 2472 96 6 0 chr11 70876212 70876568 -77906904 + L1PA14 LINE L1 5804 6161 0 3722 154 67 41 chr11 70876605 70877564 -77905908 - MER11C LTR ERVK 0 1071 1 923 122 0 29 chr11 70877582 70877721 -77905751 - AluJb SINE Alu -92 220 86 198 0 0 0 chr11 70877724 70877746 -77905726 + (T)n Simple_repeat Simple_repeat 1 22 0 473 314 100 87 chr11 70877775 70878069 -77905403 - L1MEc LINE L1 -1057 1450 1161 2117 109 7 0 chr11 70878069 70878362 -77905110 - AluSq SINE Alu -18 295 1 473 314 100 87 chr11 70878362 70878656 -77904816 - L1MEc LINE L1 -1346 1161 854 807 251 49 45 chr11 70879343 70879514 -77903958 + MER58A DNA MER1_type 1 175 -2245 2549 52 0 0 chr11 70879514 70879820 -77903652 - AluY SINE Alu -5 306 1 807 251 49 45 chr11 70879820 70879871 -77903601 + MER58A DNA MER1_type 175 224 0 295 291 78 23 chr11 70880982 70881140 -77902332 + MIR SINE MIR 6 163 -45 469 227 55 0 chr11 70881811 70881921 -77901551 - L2 LINE L2 -6 3307 3192 289 289 32 32 chr11 70882036 70882192 -77901280 - LTR16C LTR ERVL 0 491 336 1889 133 43 17 chr11 70882523 70882824 -77900648 - AluSx SINE Alu -3 309 1 1038 190 0 5 chr11 70882826 70883010 -77900462 - AluJb SINE Alu -12 300 118 1514 89 5 14 chr11 70883010 70883223 -77900249 + AluSq SINE Alu 3 213 -100 248 146 0 0 chr11 70883255 70883296 -77900176 - AluJb SINE Alu -177 125 85 1285 176 30 17 chr11 70883304 70883599 -77899873 - LTR23 LTR ERV1 -138 299 1 6012 146 16 13 chr11 70883845 70883897 -77899575 - LTR23-int LTR ERV1 -265 5699 5649 1928 154 0 3 chr11 70883897 70884196 -77899276 + AluJb SINE Alu 1 298 -14 6012 146 16 13 chr11 70884196 70884224 -77899248 - LTR23-int LTR ERV1 -315 5649 5623 2110 119 0 16 chr11 70884224 70884527 -77898945 + AluSx SINE Alu 1 298 -14 6012 146 16 13 chr11 70884527 70885110 -77898362 - LTR23-int LTR ERV1 -341 5623 5043 5978 122 28 46 chr11 70885110 70886082 -77897390 - LTR13 LTR ERVK 0 954 1 6012 146 16 13 chr11 70886082 70886672 -77896800 - LTR23-int LTR ERV1 -921 5043 4434 834 169 148 131 chr11 70886705 70887027 -77896445 - MER51C LTR ERV1 0 640 328 448 169 0 0 chr11 70887152 70887223 -77896249 + AluS SINE Alu 22 92 -221 1576 159 24 0 chr11 70887161 70887413 -77896059 + AluJb SINE Alu 31 288 -24 2553 100 46 35 chr11 70887447 70887782 -77895690 - LTR49-int LTR ERV1 -1693 4638 4295 2251 107 3 0 chr11 70887782 70888073 -77895399 + AluSg SINE Alu 1 292 -18 2553 100 46 35 chr11 70888073 70888168 -77895304 - LTR49-int LTR ERV1 -2036 4295 4203 249 143 0 0 chr11 70988207 70988249 -77795223 - L1MB7 LINE L1 -241 5943 5902 * 459 215 186 29 chr11 70988224 70988396 -77795076 + L1MB5 LINE L1 5689 5887 -287 307 68 0 0 chr11 70988411 70988455 -77795017 + MER5B DNA MER1_type 135 178 0 1324 168 5 0 chr11 70988652 70988860 -77794612 - AluSx SINE Alu -92 220 12 2182 108 0 3 chr11 70988987 70989292 -77794180 + AluSc SINE Alu 1 304 -5 181 291 82 82 chr11 70989540 70989674 -77793798 + L3 LINE CR1 643 776 -801 563 331 66 11 chr11 70990048 70990335 -77793137 + L2 LINE L2 2458 2760 -554 2320 72 0 3 chr11 70990366 70990671 -77792801 + AluY SINE Alu 1 304 -7 742 271 119 9 chr11 70990674 70991121 -77792351 + HAL1b LINE L1 438 933 -415 618 204 168 27 chr11 70991624 70991958 -77791514 + HAL1b LINE L1 940 1320 -28 1809 128 4 4 chr11 70992029 70992294 -77791178 - AluSx SINE Alu -47 265 1 2010 127 0 20 chr11 70992882 70993182 -77790290 - AluSc SINE Alu -15 294 1 267 283 92 49 chr11 70993263 70993631 -77789841 + L1MC5 LINE L1 7548 7931 -30 1835 157 20 13 chr11 70993640 70993945 -77789527 + AluJb SINE Alu 1 307 -5 275 250 164 3 chr11 70994388 70994502 -77788970 - MIR SINE MIR -47 161 31 599 83 12 12 chr11 70997882 70997966 -77785506 + AluS SINE Alu 1 84 -228 1605 191 11 0 chr11 70998818 70999101 -77784371 - AluJb SINE Alu -26 286 1 1296 123 5 20 chr11 70999333 70999536 -77783936 - AluSg/x SINE Alu -1 309 110 2268 86 7 3 chr11 70999613 70999917 -77783555 + AluSc SINE Alu 1 305 -4 2346 58 3 0 chr11 71000286 71000577 -77782895 + AluY SINE Alu 1 292 -19 1952 155 0 7 chr11 71000775 71001078 -77782394 + AluSx SINE Alu 1 301 -11 1536 121 0 0 chr11 71001410 71001616 -77781856 + AluSp SINE Alu 3 208 -105 303 232 0 0 chr11 71002131 71002200 -77781272 - MIR SINE MIR -118 144 76 303 301 58 38 chr11 71002956 71003115 -77780357 + MIR SINE MIR 3 163 -61 187 361 58 19 chr11 71003794 71003999 -77779473 - L2 LINE L2 -219 3053 2841 353 280 136 0 chr11 71005659 71005784 -77777688 + MIR SINE MIR 6 147 -115 379 302 81 60 chr11 71005789 71006186 -77777286 - L2 LINE L2 -18 3254 2850 2238 101 13 7 chr11 71006465 71006771 -77776701 + AluSq SINE Alu 1 308 -5 884 209 16 0 chr11 71007468 71007650 -77775822 + MER53 DNA DNA 5 189 0 337 260 0 52 chr11 71008244 71008340 -77775132 - MIR SINE MIR -70 192 102 339 369 65 10 chr11 71008661 71008954 -77774518 + L1ME3A LINE L1 5611 5922 -248 2183 78 3 0 chr11 71009025 71009309 -77774163 + L1PA8 LINE L1 5886 6170 -2 1456 134 26 146 chr11 71009430 71009780 -77773692 - AluSg SINE Alu -2 308 1 2132 114 13 0 chr11 71010396 71010695 -77772777 - AluSx SINE Alu -9 303 1 984 190 14 36 chr11 71011560 71011781 -77771691 - MER58A DNA MER1_type 0 224 9 2724 132 56 30 chr11 71012188 71012364 -77771108 + L1MA8 LINE L1 5775 5945 -346 1701 186 6 6 chr11 71012364 71012676 -77770796 + AluJo SINE Alu 1 312 0 2724 132 56 30 chr11 71012676 71012999 -77770473 + L1MA8 LINE L1 5945 6287 -4 25 0 0 0 chr11 71013026 71013051 -77770421 + AT_rich Low_complexity Low_complexity 1 25 0 2098 123 7 13 chr11 71013056 71013365 -77770107 - AluSx SINE Alu -3 309 3 25 31 0 0 chr11 71013565 71013597 -77769875 + AT_rich Low_complexity Low_complexity 1 32 0 1199 158 55 0 chr11 71013600 71013802 -77769670 + AluSx SINE Alu 4 216 -96 294 373 69 4 chr11 71013802 71014035 -77769437 + L2 LINE L2 2124 2371 -943 2214 112 0 0 chr11 71015142 71015445 -77768027 + AluSx SINE Alu 1 303 -9 417 310 54 22 chr11 71015448 71015632 -77767840 - MIR SINE MIR -32 230 41 602 246 34 34 chr11 71015713 71015892 -77767580 + MER20 DNA MER1_type 39 217 -2 303 232 0 0 chr11 71016973 71017042 -77766430 + MIR SINE MIR 76 144 -118 239 244 360 0 chr11 71017761 71017847 -77765625 + MIR SINE MIR 28 144 -118 251 312 46 0 chr11 71019626 71019735 -77763737 + MER103 DNA DNA 53 166 0 251 260 125 48 chr11 71019809 71019913 -77763559 + MIR SINE MIR 35 146 -62 2308 95 0 3 chr11 71021195 71021499 -77761973 - AluSc SINE Alu -6 303 1 524 252 14 21 chr11 71021635 71021778 -77761694 + Tigger1 DNA MER2_type 22 163 -2255 450 196 87 101 chr11 71021759 71021782 -77761690 + Tigger1 DNA MER2_type 2202 2224 -194 * 1800 131 57 30 chr11 71021782 71022080 -77761392 - AluJb SINE Alu -6 306 1 450 196 87 101 chr11 71022080 71022153 -77761319 + Tigger1 DNA MER2_type 2224 2296 -122 1956 138 0 7 chr11 71022153 71022450 -77761022 - AluSx SINE Alu -17 295 1 450 196 87 101 chr11 71022450 71022470 -77761002 + Tigger1 DNA MER2_type 2296 2315 -103 1598 126 4 8 chr11 71022470 71022709 -77760763 - AluSq SINE Alu -75 238 1 450 196 87 101 chr11 71022709 71022809 -77760663 + Tigger1 DNA MER2_type 2315 2417 -1 358 321 41 1 chr11 71022822 71022964 -77760508 - MIR3 SINE MIR -52 156 27 215 280 42 42 chr11 71023797 71023915 -77759557 - MIR SINE MIR -59 149 32 192 238 48 0 chr11 71024812 71024854 -77758618 - MIR SINE MIR -135 73 30 2026 117 3 3 chr11 71025593 71025876 -77757596 + AluSx SINE Alu 1 283 -29 412 284 135 7 chr11 71028548 71028696 -77754776 + MIR SINE MIR 20 186 -76 1862 98 4 0 chr11 71028763 71029008 -77754464 - AluSx SINE Alu -15 297 52 1059 201 54 117 chr11 71029325 71029431 -77754041 - MLT1B LTR MaLR -7 383 272 798 156 0 22 chr11 71029431 71029566 -77753906 + FLAM_C SINE Alu 1 132 -1 1059 201 54 117 chr11 71029566 71029868 -77753604 - MLT1B LTR MaLR -118 272 1 199 318 47 12 chr11 71029910 71029995 -77753477 - MIR SINE MIR -63 145 58 473 206 20 0 chr11 71030107 71030209 -77753263 - MIR SINE MIR -92 170 67 2116 101 0 35 chr11 71030210 71030528 -77752944 - AluSx SINE Alu -5 307 1 414 258 84 54 chr11 71031358 71031403 -77752069 - MIR SINE MIR -24 238 196 2304 107 0 0 chr11 71031403 71031712 -77751760 - AluSx SINE Alu -3 309 1 414 258 84 54 chr11 71031712 71031833 -77751639 - MIR SINE MIR -66 196 67 246 216 102 0 chr11 71033396 71033484 -77749988 + MIR SINE MIR 48 144 -118 1445 269 104 44 chr11 71037785 71038229 -77745243 - L1ME2 LINE L1 0 6164 5748 2163 107 10 10 chr11 71038229 71038528 -77744944 + AluSx SINE Alu 1 299 -13 1445 269 104 44 chr11 71038528 71038881 -77744591 - L1ME2 LINE L1 -416 5748 5293 2232 110 0 10 chr11 71038881 71039180 -77744292 + AluSp SINE Alu 1 296 -17 1445 269 104 44 chr11 71039180 71039344 -77744128 - L1ME2 LINE L1 -871 5293 5140 3484 178 104 54 chr11 71039345 71039846 -77743626 + MER21A LTR ERV1 6 569 -362 787 148 8 8 chr11 71039846 71039974 -77743498 + FLAM_A SINE Alu 1 128 -5 3484 178 104 54 chr11 71039974 71040336 -77743136 + MER21A LTR ERV1 569 912 -19 3631 248 81 36 chr11 71040361 71040437 -77743035 - L1ME2 LINE L1 -1004 5142 5071 2483 83 0 0 chr11 71040437 71040737 -77742735 - AluY SINE Alu -11 300 1 3631 248 81 36 chr11 71040737 71041007 -77742465 - L1ME2 LINE L1 -1075 5071 4815 1724 163 30 10 chr11 71041007 71041307 -77742165 - AluJo SINE Alu -4 308 3 3631 248 81 36 chr11 71041307 71042014 -77741458 - L1ME2 LINE L1 -1331 4815 4011 2355 94 7 0 chr11 71042014 71042313 -77741159 - AluSp SINE Alu -12 301 1 3631 248 81 36 chr11 71042313 71042609 -77740863 - L1ME2 LINE L1 -2135 4011 3730 1548 228 67 100 chr11 71042614 71043151 -77740321 - L1ME2 LINE L1 -3103 3043 2490 2426 47 0 27 chr11 71043151 71043450 -77740022 - AluY SINE Alu -20 291 1 2150 114 0 4 chr11 71043450 71043729 -77739743 - AluSq SINE Alu -35 278 1 1548 228 67 100 chr11 71043729 71043912 -77739560 - L1ME2 LINE L1 -3935 2211 2347 2432 100 3 0 chr11 71044263 71044573 -77738899 - AluSx SINE Alu -1 311 1 1896 159 24 3 chr11 71046384 71046674 -77736798 + AluJo SINE Alu 1 296 -16 1794 141 39 62 chr11 71046788 71047172 -77736300 + THE1C LTR MaLR 1 375 0 2247 113 7 3 chr11 71047298 71047599 -77735873 + AluSx SINE Alu 3 304 -8 2179 127 0 3 chr11 71048586 71048885 -77734587 + AluJb SINE Alu 1 298 -14 1512 196 45 0 chr11 71050502 71050768 -77732704 + AluJb SINE Alu 13 290 -22 2079 149 7 0 chr11 71051591 71051887 -77731585 - AluJo SINE Alu -14 298 1 308 253 95 68 chr11 71052282 71052503 -77730969 + L2 LINE L2 2951 3177 -136 2296 105 3 0 chr11 71052574 71052870 -77730602 + AluSc SINE Alu 1 297 -12 290 318 93 40 chr11 71054086 71054453 -77729019 - L3 LINE CR1 -6 1571 1119 236 355 57 0 chr11 71054621 71054745 -77728727 - L3 LINE CR1 -561 1016 886 346 392 37 25 chr11 71054787 71055032 -77728440 + MIR SINE MIR 3 250 -12 2045 134 0 22 chr11 71055433 71055747 -77727725 + AluJo SINE Alu 1 307 -5 392 200 0 12 chr11 71055767 71055847 -77727625 - MER116 DNA Mariner 0 80 2 1624 178 14 27 chr11 71055881 71056173 -77727299 + AluJo SINE Alu 1 288 -24 312 309 72 10 chr11 71056401 71056498 -77726974 - L1ME3A LINE L1 -240 5930 5828 1099 57 0 0 chr11 71056543 71056667 -77726805 + AluSp SINE Alu 1 124 -189 253 217 0 0 chr11 71056914 71056974 -77726498 - MER91A DNA MER1_type -136 60 1 182 116 0 116 chr11 71057731 71057774 -77725698 - L2 LINE L2 -11 3261 3224 * 378 261 30 52 chr11 71057745 71057879 -77725593 - MIR SINE MIR -14 248 118 809 86 19 0 chr11 71058543 71058648 -77724824 + FLAM_C SINE Alu 1 107 -36 2287 110 0 7 chr11 71059843 71060151 -77723321 + AluSx SINE Alu 1 306 -6 404 313 8 8 chr11 71060442 71060573 -77722899 - L2 LINE L2 0 3272 3142 253 286 151 5 chr11 71061000 71061192 -77722280 + MER112 DNA MER1_type 31 250 -10 307 263 30 45 chr11 71061288 71061421 -77722051 - L2 LINE L2 -1376 1938 1808 1254 229 50 73 chr11 71061503 71061808 -77721664 + L1MC4a LINE L1 7339 7649 -159 1730 136 41 37 chr11 71061808 71062102 -77721370 - AluSq SINE Alu 0 313 19 1254 229 50 73 chr11 71062102 71062219 -77721253 + L1MC4a LINE L1 7649 7751 -57 2462 64 3 7 chr11 71062219 71062516 -77720956 - AluY SINE Alu -15 296 1 1254 229 50 73 chr11 71062516 71062572 -77720900 + L1MC4a LINE L1 7751 7807 -1 419 229 76 23 chr11 71062849 71062980 -77720492 - L2 LINE L2 -1285 2029 1892 2128 119 20 13 chr11 71063230 71063532 -77719940 - AluSg SINE Alu -6 304 1 22 35 0 0 chr11 71064963 71064992 -77718480 + AT_rich Low_complexity Low_complexity 1 29 0 2259 110 0 7 chr11 71066848 71067148 -77716324 + AluSq SINE Alu 1 298 -15 228 292 0 0 chr11 71067197 71067286 -77716186 + L1MC4 LINE L1 6614 6702 -1340 313 232 0 0 chr11 71067289 71067345 -77716127 - L1MC4 LINE L1 -1339 6703 6648 450 209 126 0 chr11 71067504 71067695 -77715777 + L1MC5 LINE L1 7606 7820 -141 667 217 146 7 chr11 71069008 71069289 -77714183 - L1MC5 LINE L1 -36 7925 7606 336 175 0 0 chr11 71069446 71069509 -77713963 + (TA)n Simple_repeat Simple_repeat 1 63 0 2023 122 0 4 chr11 71069609 71069880 -77713592 + AluSx SINE Alu 30 299 -13 205 310 136 7 chr11 71070007 71070170 -77713302 + MIR SINE MIR 59 243 -19 246 296 97 45 chr11 71070894 71071070 -77712402 - MIR SINE MIR -70 192 8 2235 105 6 10 chr11 71071086 71071399 -77712073 - AluJb SINE Alu 0 312 1 763 204 10 46 chr11 71071875 71072071 -77711401 - LOR1a LTR ERV1 0 497 309 291 287 19 59 chr11 71072501 71072531 -77710941 - MIR SINE MIR -57 151 121 2397 103 0 0 chr11 71072531 71072833 -77710639 - AluSx SINE Alu -10 302 1 291 287 19 59 chr11 71072833 71072970 -77710502 - MIR SINE MIR -87 121 30 251 275 11 22 chr11 71073516 71073607 -77709865 + MIR SINE MIR 63 152 -110 489 255 150 0 chr11 71073694 71073847 -77709625 + MIR SINE MIR 12 187 -75 180 0 0 0 chr11 71074284 71074304 -77709168 + (CTGGGG)n Simple_repeat Simple_repeat 1 20 0 273 196 0 18 chr11 71074910 71074966 -77708506 - FLAM_A SINE Alu -10 123 69 743 240 229 0 chr11 71076193 71076472 -77707000 + L1MD3 LINE L1 6776 7118 -877 1206 194 93 19 chr11 71076477 71076801 -77706671 + L1M2 LINE L1 2471 2818 -4031 238 238 0 32 chr11 71076811 71076874 -77706598 + MLT1F1 LTR MaLR 59 119 -448 667 276 56 4 chr11 71076880 71077112 -77706360 + L1MD3 LINE L1 7410 7653 -342 564 230 8 0 chr11 71077127 71077253 -77706219 + L1MD3 LINE L1 7733 7859 -136 1248 176 5 14 chr11 71077257 71077467 -77706005 - AluJo SINE Alu -104 208 1 620 152 0 0 chr11 71077509 71077614 -77705858 + L1MC3 LINE L1 7681 7785 0 2385 100 0 3 chr11 71077622 71077923 -77705549 + AluSx SINE Alu 1 300 -12 1906 160 0 19 chr11 71080691 71080998 -77702474 + AluSx SINE Alu 1 301 -11 241 311 22 11 chr11 71081802 71081892 -77701580 - MIR SINE MIR -79 129 39 240 247 46 11 chr11 71082111 71082202 -77701270 - MIR SINE MIR -56 152 80 221 100 50 0 chr11 71082789 71082829 -77700643 + (TTCA)n Simple_repeat Simple_repeat 2 43 0 364 333 64 10 chr11 71083069 71083273 -77700199 - L2 LINE L2 -236 3077 2863 504 174 51 0 chr11 71083364 71083462 -77700010 - FLAM_C SINE Alu -11 132 30 214 315 14 0 chr11 71083815 71083888 -77699584 - MIR SINE MIR -86 122 49 260 250 28 0 chr11 71084068 71084140 -77699332 + MIR SINE MIR 48 121 -141 1294 230 75 31 chr11 71084765 71085136 -77698336 + L2 LINE L2 2762 3163 -150 2281 121 0 0 chr11 71085136 71085441 -77698031 - AluSx SINE Alu -7 305 1 1294 230 75 31 chr11 71085441 71085595 -77697877 + L2 LINE L2 3163 3309 -4 190 232 71 0 chr11 71086510 71086566 -77696906 + MIR SINE MIR 92 151 -111 768 286 79 4 chr11 71087437 71087664 -77695808 + MIR SINE MIR 13 256 -6 255 296 65 9 chr11 71088259 71088367 -77695105 - MIR SINE MIR -70 192 79 382 350 31 0 chr11 71089190 71089350 -77694122 + MIR SINE MIR 24 188 -74 1452 188 136 59 chr11 71089664 71090121 -77693351 + LTR54B LTR ERV1 3 494 -4 22 56 0 0 chr11 71091238 71091274 -77692198 + AT_rich Low_complexity Low_complexity 1 36 0 1646 194 47 42 chr11 71091421 71091828 -77691644 + LTR2 LTR ERV1 41 449 0 194 385 0 0 chr11 71091829 71091894 -77691578 + MIR3 SINE MIR 109 173 -35 218 226 19 0 chr11 71092774 71092827 -77690645 - MIR SINE MIR -85 123 70 205 254 100 5 chr11 71093277 71093393 -77690079 + MIR SINE MIR 28 146 -62 496 245 151 10 chr11 71093447 71093622 -77689850 + MIR SINE MIR 26 221 -41 203 61 30 0 chr11 71093723 71093756 -77689716 + (TTCA)n Simple_repeat Simple_repeat 2 35 0 457 321 31 0 chr11 71093843 71094005 -77689467 + MIR SINE MIR 85 251 -11 266 180 20 0 chr11 71094221 71094271 -77689201 - L2 LINE L2 0 3272 3222 272 241 206 57 chr11 71095085 71095116 -77688356 - LTR33A LTR ERVL 0 523 498 207 24 49 24 chr11 71095116 71095157 -77688315 + (TTTG)n Simple_repeat Simple_repeat 1 42 0 1623 130 25 56 chr11 71095160 71095444 -77688028 - AluJb SINE Alu -37 275 1 272 241 206 57 chr11 71095444 71095636 -77687836 - LTR33A LTR ERVL -26 497 262 1174 123 6 6 chr11 71095641 71095812 -77687660 + AluSx SINE Alu 29 199 -113 480 246 69 51 chr11 71096800 71096975 -77686497 - MIR SINE MIR -36 226 49 198 209 0 0 chr11 71097007 71097050 -77686422 + (CA)n Simple_repeat Simple_repeat 1 43 0 40 21 0 0 chr11 71097328 71097375 -77686097 + GC_rich Low_complexity Low_complexity 1 47 0 23 54 0 0 chr11 71097586 71097623 -77685849 + GC_rich Low_complexity Low_complexity 1 37 0 330 26 0 0 chr11 71099003 71099042 -77684430 + (TG)n Simple_repeat Simple_repeat 1 39 0 2007 139 17 0 chr11 71099060 71099361 -77684111 - AluSx SINE Alu -4 308 3 1509 185 57 20 chr11 71099542 71099840 -77683632 - AluJo SINE Alu -2 310 2 341 327 122 19 chr11 71099971 71100000 -77683472 - MIR SINE MIR -24 238 213 2274 103 3 3 chr11 71100000 71100312 -77683160 - AluSx SINE Alu 0 312 1 341 327 122 19 chr11 71100312 71100487 -77682985 - MIR SINE MIR -49 213 13 2090 108 18 0 chr11 71100556 71100842 -77682630 - AluSx SINE Alu -21 291 1 282 229 148 0 chr11 71101335 71101433 -77682039 - MIR SINE MIR -63 145 35 301 303 25 25 chr11 71101707 71101826 -77681646 + MIR3 SINE MIR 14 132 -76 719 203 8 0 chr11 71102150 71102278 -77681194 - FLAM_A SINE Alu -2 131 3 1338 158 4 34 chr11 71102290 71102524 -77680948 - AluJo SINE Alu 0 312 86 242 222 0 97 chr11 71103018 71103090 -77680382 - L2 LINE L2 -194 3078 3014 282 192 39 0 chr11 71104640 71104718 -77678754 - MER53 DNA DNA 0 189 109 196 357 70 23 chr11 71106843 71106972 -77676500 - MIR3 SINE MIR -63 145 11 2179 92 6 16 chr11 71107935 71108249 -77675223 + AluSq SINE Alu 1 311 -2 1953 131 13 13 chr11 71108261 71108573 -77674899 + AluSx SINE Alu 1 312 0 1649 130 32 0 chr11 71108586 71108833 -77674639 + AluJo SINE Alu 1 255 -57 255 284 15 0 chr11 71108918 71108985 -77674487 - MER112 DNA MER1_type -175 85 18 2237 104 3 16 chr11 71112143 71112460 -77671012 - AluSq SINE Alu 0 313 1 625 240 29 59 chr11 71112527 71112617 -77670855 + L1MEd LINE L1 23 114 -6005 2214 107 10 0 chr11 71112617 71112925 -77670547 + AluSq SINE Alu 1 311 -2 625 240 29 59 chr11 71112925 71113038 -77670434 + L1MEd LINE L1 114 220 -5899 524 270 207 36 chr11 71113066 71113336 -77670136 + L1MEd LINE L1 298 521 -5598 2158 83 17 3 chr11 71113336 71113625 -77669847 + AluSq SINE Alu 1 293 -20 524 270 207 36 chr11 71113625 71113765 -77669707 + L1MEd LINE L1 521 778 -5341 336 276 0 24 chr11 71113812 71113935 -77669537 + MLT1E LTR MaLR 1 120 -473 628 231 0 8 chr11 71113937 71114128 -77669344 - FLAM_C SINE Alu 0 191 2 2149 93 21 0 chr11 71114138 71114427 -77669045 - AluSx SINE Alu -17 295 1 251 237 13 40 chr11 71114435 71114511 -77668961 + MLT1E3 LTR MaLR 12 85 -569 293 291 37 9 chr11 71114526 71114741 -77668731 + MLT1E3 LTR MaLR 193 397 -227 1726 206 108 16 chr11 71114745 71115753 -77667719 - SATR1 Satellite Satellite -1 1101 1 324 213 12 53 chr11 71115844 71116013 -77667459 + (TTA)n Simple_repeat Simple_repeat 3 164 0 22 88 0 0 chr11 71116064 71116121 -77667351 + AT_rich Low_complexity Low_complexity 1 57 0 1957 198 112 8 chr11 71116128 71118325 -77665147 - SATR1 Satellite Satellite -1 2425 1 26324 99 14 12 chr11 71118671 71122727 -77660745 + HERVE LTR ERV1 1108 5171 -2642 1973 182 116 31 chr11 71122727 71125130 -77658342 - SATR1 Satellite Satellite -144 2606 1 1397 119 27 14 chr11 71125160 71125379 -77658093 - AluSq SINE Alu -91 222 1 748 228 46 0 chr11 71127266 71127463 -77656009 + MER6B DNA MER2_type 5 210 0 381 280 20 33 chr11 71127568 71127718 -77655754 - MER5B DNA MER1_type -6 172 25 2008 133 0 31 chr11 71127861 71128184 -77655288 - AluSp SINE Alu 0 313 1 241 266 105 35 chr11 71128189 71128332 -77655140 - HsTC2 DNA Tc2 -113 1785 1633 1134 256 2 60 chr11 71128370 71128553 -77654919 + L1MA4 LINE L1 5767 5959 -341 1692 173 0 3 chr11 71128553 71128837 -77654635 + AluSx SINE Alu 1 283 -29 1134 256 2 60 chr11 71128837 71129071 -77654401 + L1MA4 LINE L1 5959 6160 -140 2071 107 3 3 chr11 71129120 71129420 -77654052 - AluSp SINE Alu -13 300 1 2902 243 20 27 chr11 71129465 71130462 -77653010 + L1MB3 LINE L1 4818 5821 -362 1867 138 3 7 chr11 71130462 71130811 -77652661 + AluSx SINE Alu 1 348 0 2902 243 20 27 chr11 71130811 71130902 -77652570 + L1MB3 LINE L1 5821 5911 -272 1880 134 35 0 chr11 71130902 71131185 -77652287 + AluSx SINE Alu 3 295 -17 2902 243 20 27 chr11 71131185 71131437 -77652035 + L1MB3 LINE L1 5911 6153 -30 24 32 0 0 chr11 71131457 71131488 -77651984 + AT_rich Low_complexity Low_complexity 1 31 0 3416 213 15 74 chr11 71131946 71132976 -77650496 + LTR5 LTR ERVK 1 969 0 346 377 45 14 chr11 71133295 71133515 -77649957 - MIR SINE MIR -4 258 32 2018 125 0 31 chr11 71133909 71134229 -77649243 + AluSg SINE Alu 1 310 0 269 235 31 10 chr11 71135353 71135451 -77648021 + L1M4 LINE L1 4623 4722 -1424 492 62 0 0 chr11 71135459 71135523 -77647949 + (TA)n Simple_repeat Simple_repeat 2 65 0 305 300 76 18 chr11 71135528 71135751 -77647721 - L1M4 LINE L1 -3189 2957 2722 186 156 0 0 chr11 71135757 71135802 -77647670 + T-rich Low_complexity Low_complexity 1 45 0 408 197 87 24 chr11 71136200 71136327 -77647145 - MLT1J1 LTR MaLR -312 134 1 367 314 39 45 chr11 71136335 71136491 -77646981 - L1M4 LINE L1 -3594 2552 2398 228 315 112 11 chr11 71136541 71136630 -77646842 - MIR3 SINE MIR -54 154 57 4074 122 180 95 chr11 71136741 71138137 -77645335 - pTR5 LTR ERV1 0 2438 743 509 302 217 34 chr11 71139431 71140118 -77643354 + L2 LINE L2 2243 3122 -191 2004 125 7 7 chr11 71140118 71140414 -77643058 - AluSq SINE Alu -17 296 1 509 302 217 34 chr11 71140414 71140597 -77642875 + L2 LINE L2 3122 3270 -43 347 224 12 35 chr11 71140727 71140812 -77642660 - MER5A DNA MER1_type 0 189 107 431 273 170 12 chr11 71140818 71140983 -77642489 + L2 LINE L2 2515 2705 -609 1316 175 38 4 chr11 71140993 71141233 -77642239 - AluJb SINE Alu -23 289 42 273 140 0 0 chr11 71141302 71141359 -77642113 + (TC)n Simple_repeat Simple_repeat 2 58 0 2320 68 0 0 chr11 71142004 71142296 -77641176 + AluY SINE Alu 1 292 -19 197 56 0 56 chr11 71142526 71142562 -77640910 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1916 125 4 0 chr11 71142564 71142843 -77640629 - AluSc SINE Alu -29 280 1 191 333 17 0 chr11 71143094 71143154 -77640318 + MIR SINE MIR 15 75 -187 2909 216 55 7 chr11 71143159 71143762 -77639710 - ERVL LTR ERVL -3615 2149 1518 518 260 16 0 chr11 71143778 71143901 -77639571 + MIR SINE MIR 99 223 -39 287 283 97 9 chr11 71143991 71144104 -77639368 - L2 LINE L2 -13 3300 3178 448 282 106 72 chr11 71144576 71145019 -77638453 + L2 LINE L2 2804 3261 -11 620 298 16 36 chr11 71147141 71147389 -77636083 + MIR SINE MIR 8 250 -12 1525 177 25 0 chr11 71147472 71147755 -77635717 + AluJb SINE Alu 1 290 -22 648 254 36 49 chr11 71149054 71149285 -77634187 - MER20 DNA MER1_type -2 217 1 444 310 54 22 chr11 71149314 71149498 -77633974 + MIR SINE MIR 41 230 -32 2162 112 0 0 chr11 71149501 71149804 -77633668 - AluSx SINE Alu -9 303 1 259 361 26 0 chr11 71150988 71151143 -77632329 - L2 LINE L2 -1032 2282 2124 1289 137 54 0 chr11 71151143 71151348 -77632124 - AluSx SINE Alu -96 216 1 25 31 0 0 chr11 71151348 71151380 -77632092 + AT_rich Low_complexity Low_complexity 1 32 0 2061 115 7 13 chr11 71151580 71151884 -77631588 + AluSx SINE Alu 3 304 -8 25 0 0 0 chr11 71151894 71151919 -77631553 + AT_rich Low_complexity Low_complexity 1 25 0 2605 134 56 30 chr11 71151946 71152269 -77631203 - L1MA8 LINE L1 -4 6287 5945 1681 183 6 3 chr11 71152269 71152580 -77630892 - AluJo SINE Alu 0 312 1 2605 134 56 30 chr11 71152580 71152756 -77630716 - L1MA8 LINE L1 -346 5945 5775 1088 190 14 36 chr11 71153163 71153384 -77630088 + MER58A DNA MER1_type 9 224 0 2088 111 14 0 chr11 71154250 71154547 -77628925 + AluSx SINE Alu 1 301 -11 1398 134 26 146 chr11 71155165 71155515 -77627957 + AluSg SINE Alu 1 308 -2 2157 70 3 7 chr11 71155636 71155920 -77627552 - L1PA8 LINE L1 -4 6168 5886 281 389 22 0 chr11 71156099 71156284 -77627188 - L1MC/D LINE L1 -2009 5799 5611 332 260 0 52 chr11 71156605 71156701 -77626771 + MIR SINE MIR 102 192 -70 813 214 16 0 chr11 71157295 71157477 -77625995 - MER53 DNA DNA 0 189 5 2188 101 13 7 chr11 71158174 71158480 -77624992 - AluSq SINE Alu -5 308 1 190 303 45 0 chr11 71158707 71158773 -77624699 - MIR SINE MIR -57 205 137 * 376 310 80 59 chr11 71158769 71159156 -77624316 + L2 LINE L2 2860 3254 -18 375 232 168 32 chr11 71159161 71159286 -77624186 - MIR SINE MIR -115 147 6 654 181 0 0 chr11 71160321 71160465 -77623007 + (TCCA)n Simple_repeat Simple_repeat 1 144 0 507 248 0 0 chr11 71160514 71160749 -77622723 + (TCCA)n Simple_repeat Simple_repeat 1 235 0 190 283 0 0 chr11 71160764 71160810 -77622662 - L2 LINE L2 -1 3312 3267 494 270 167 9 chr11 71160823 71161038 -77622434 + MIR SINE MIR 12 260 -2 229 348 34 17 chr11 71161135 71161253 -77622219 - L2 LINE L2 -163 3109 2990 213 346 9 37 chr11 71161450 71161557 -77621915 + MIR SINE MIR 113 216 -46 2139 122 3 0 chr11 71161671 71161982 -77621490 + AluSx SINE Alu 1 312 0 212 167 0 0 chr11 71162172 71162214 -77621258 + A-rich Low_complexity Low_complexity 1 42 0 286 242 164 3 chr11 71162336 71162450 -77621022 + MIR SINE MIR 31 161 -47 183 216 20 59 chr11 71162551 71162602 -77620870 + MER5A DNA MER1_type 119 167 -22 1779 150 20 10 chr11 71162904 71163197 -77620275 - AluJb SINE Alu -16 296 1 410 241 98 73 chr11 71163199 71163515 -77619957 - L1MC5 LINE L1 -28 7933 7610 2019 120 0 20 chr11 71163653 71163952 -77619520 + AluSc SINE Alu 1 293 -16 1736 132 4 4 chr11 71164540 71164805 -77618667 + AluSx SINE Alu 1 265 -47 758 195 171 27 chr11 71164877 71165210 -77618262 - HAL1b LINE L1 -28 1320 940 890 271 119 9 chr11 71165713 71166160 -77617312 - HAL1b LINE L1 -415 933 438 2054 110 0 16 chr11 71166163 71166472 -77617000 - AluY SINE Alu -7 304 1 281 256 49 0 chr11 71166745 71166827 -77616645 - L2 LINE L2 -220 3052 2967 1373 196 33 135 chr11 71166842 71167301 -77616171 + MLT2B1 LTR ERVL 3 414 0 423 0 0 0 chr11 71167690 71167737 -77615735 + (TGG)n Simple_repeat Simple_repeat 2 48 0 594 76 0 0 chr11 71167905 71167984 -77615488 + MADE1 DNA Mariner 2 80 0 604 348 21 17 chr11 71169351 71169641 -77613831 + MLT1I LTR MaLR 116 406 -3 429 20 0 0 chr11 71169655 71169705 -77613767 + (TG)n Simple_repeat Simple_repeat 1 50 0 398 223 113 93 chr11 71170802 71170857 -77612615 + L1ME3A LINE L1 5874 5926 -244 747 231 27 36 chr11 71170857 71171078 -77612394 - MER20 DNA MER1_type 0 219 1 398 223 113 93 chr11 71171078 71171226 -77612246 + L1ME3A LINE L1 5926 6087 -83 1639 155 7 32 chr11 71171226 71171536 -77611936 - AluJo SINE Alu -10 302 1 398 223 113 93 chr11 71171536 71171622 -77611850 + L1ME3A LINE L1 6087 6170 0 1780 163 10 0 chr11 71171975 71172264 -77611208 - AluSx SINE Alu -18 294 3 1934 125 11 0 chr11 71172470 71172757 -77610715 + AluSx SINE Alu 1 290 -22 1414 189 4 14 chr11 71173414 71173533 -77609939 - L1M4 LINE L1 -565 5609 5490 1985 132 3 3 chr11 71173533 71173836 -77609636 - AluSx SINE Alu -9 303 1 1414 189 4 14 chr11 71173836 71173991 -77609481 - L1M4 LINE L1 -684 5490 5338 1187 265 129 14 chr11 71173994 71174420 -77609052 + L1MB5 LINE L1 5646 6120 -54 1077 172 0 29 chr11 71174493 71174702 -77608770 + AluJo SINE Alu 1 203 -109 472 94 0 0 chr11 71174706 71174770 -77608702 + AluSg/x SINE Alu 74 137 -173 792 158 8 0 chr11 71175647 71175767 -77607705 + AluSg/x SINE Alu 128 248 -62 1052 134 25 40 chr11 71175767 71175968 -77607504 + AluJo SINE Alu 85 282 -30 467 81 0 27 chr11 71175970 71176044 -77607428 + (CATA)n Simple_repeat Simple_repeat 2 73 0 259 244 181 39 chr11 71176216 71176343 -77607129 - MIR SINE MIR -25 237 93 2635 153 16 18 chr11 71176343 71176789 -77606683 - L1MA7 LINE L1 -232 6059 5615 1018 146 90 0 chr11 71176789 71177000 -77606472 + L1MA7 LINE L1 6055 6285 -6 205 233 58 105 chr11 71177018 71177104 -77606368 - MIR SINE MIR -156 106 25 243 0 0 0 chr11 71177872 71177899 -77605573 + (T)n Simple_repeat Simple_repeat 1 27 0 282 217 19 142 chr11 71177963 71178069 -77605403 - L2 LINE L2 -7 3265 3173 2975 201 25 76 chr11 71178943 71179964 -77603508 - LTR5 LTR ERVK 0 969 1 1132 169 0 0 chr11 71179966 71180144 -77603328 - HERVK LTR ERVK -2 7241 7064 382 240 8 31 chr11 71180262 71180391 -77603081 + CT-rich Low_complexity Low_complexity 1 126 0 2684 96 8 0 chr11 71180493 71180858 -77602614 - HERVK LTR ERVK -1720 5523 5156 1034 132 29 0 chr11 71181259 71181433 -77602039 - L1MA4 LINE L1 -12 6288 6110 5258 150 34 38 chr11 71181441 71182592 -77600880 + L1PB1 LINE L1 4295 5433 -718 2232 99 0 6 chr11 71182592 71182904 -77600568 + AluSg SINE Alu 1 310 0 5258 150 34 38 chr11 71182904 71183620 -77599852 + L1PB1 LINE L1 5433 6150 -1 757 164 113 9 chr11 71183625 71183832 -77599640 - L1MA4 LINE L1 -178 6824 6601 3708 138 10 0 chr11 71183891 71184486 -77598986 - L1MA4 LINE L1 -373 6629 6029 1267 199 4 0 chr11 71184454 71184715 -77598757 - L1P LINE L1 -927 5921 5660 * 13915 185 35 23 chr11 71184715 71185147 -77598325 - L1MA4 LINE L1 -940 5908 5482 465 19 0 0 chr11 71185147 71185201 -77598271 + (TG)n Simple_repeat Simple_repeat 2 55 0 13915 185 35 23 chr11 71185201 71185216 -77598256 - L1MA4 LINE L1 -1366 5482 5469 1574 98 137 32 chr11 71185216 71185493 -77597979 - AluSc SINE Alu -3 306 1 13915 185 35 23 chr11 71185493 71185976 -77597496 - L1MA4 LINE L1 -1379 5469 4993 2107 110 13 13 chr11 71185976 71186286 -77597186 - AluSx SINE Alu -2 310 1 13915 185 35 23 chr11 71186286 71187301 -77596171 - L1MA4 LINE L1 -1855 4993 3991 195 42 0 0 chr11 71187301 71187325 -77596147 + (TTTC)n Simple_repeat Simple_repeat 2 25 0 13915 185 35 23 chr11 71187325 71188476 -77594996 - L1MA4 LINE L1 -2857 3991 2855 2007 159 48 14 chr11 71188476 71188828 -77594644 + THE1B LTR MaLR 1 364 0 10956 105 29 11 chr11 71188828 71190380 -77593092 + THE1B-int LTR MaLR 1 1580 0 2193 126 48 31 chr11 71190380 71190738 -77592734 + THE1B LTR MaLR 1 364 0 13915 185 35 23 chr11 71190738 71190973 -77592499 - L1MA4 LINE L1 -3993 2855 2624 991 176 0 13 chr11 71190973 71191132 -77592340 - FRAM SINE Alu -5 161 5 13915 185 35 23 chr11 71191132 71192178 -77591294 - L1MA4 LINE L1 -4224 2624 1461 2150 112 3 0 chr11 71192178 71192483 -77590989 - AluSg SINE Alu -4 306 1 13915 185 35 23 chr11 71192483 71192894 -77590578 - L1MA4 LINE L1 -5387 1461 1056 844 272 14 0 chr11 71193111 71193328 -77590144 - MER58A DNA MER1_type -1 223 4 1521 204 7 3 chr11 71193445 71193739 -77589733 + AluJo SINE Alu 1 295 -17 427 167 39 98 chr11 71193922 71194024 -77589448 - MLT1H LTR MaLR 0 549 454 662 256 96 48 chr11 71194025 71194318 -77589154 - MLT1H LTR MaLR -202 347 41 2062 105 3 16 chr11 71195270 71195583 -77587889 + AluSc SINE Alu 1 309 0 725 216 56 26 chr11 71195849 71196080 -77587392 + Charlie5 DNA MER1_type 2333 2570 -42 2097 176 24 0 chr11 71196250 71196626 -77586846 + L1MB8 LINE L1 5575 5959 -219 1094 110 75 0 chr11 71196626 71196799 -77586673 + AluSg/x SINE Alu 102 287 -23 913 212 15 5 chr11 71196802 71197005 -77586467 + L1MB8 LINE L1 5974 6178 0 351 294 52 79 chr11 71197008 71197157 -77586315 - L2 LINE L2 -265 3048 2907 1914 124 3 3 chr11 71197157 71197448 -77586024 - AluSq SINE Alu -22 291 1 351 294 52 79 chr11 71197448 71197550 -77585922 - L2 LINE L2 -406 2907 2804 191 333 0 0 chr11 71197591 71197651 -77585821 + MIR SINE MIR 89 148 -60 2254 72 0 3 chr11 71197706 71198010 -77585462 - AluY SINE Alu -8 303 1 503 294 85 28 chr11 71198042 71198324 -77585148 - L2 LINE L2 -559 2755 2458 2119 105 0 3 chr11 71199085 71199381 -77584091 - AluSc SINE Alu -14 295 1 1298 164 5 0 chr11 71199508 71199716 -77583756 + AluSx SINE Alu 12 220 -92 311 68 0 0 chr11 71199913 71199957 -77583515 - MER5B DNA MER1_type 0 178 135 554 222 182 23 chr11 71199972 71200148 -77583324 - L1MB5 LINE L1 -287 5887 5684 * 1226 183 18 56 chr11 71200118 71200402 -77583070 + L1MB5 LINE L1 5902 6174 0 869 159 0 0 chr11 71200407 71200545 -77582927 + AluSq/x SINE Alu 2 139 -173 252 356 14 27 chr11 71200562 71200708 -77582764 + MER5A DNA MER1_type 3 146 -43 1756 163 24 0 chr11 71200834 71201129 -77582343 + AluSx SINE Alu 1 302 -10 2095 191 129 7 chr11 71201408 71201858 -77581614 - MLT1E LTR MaLR 0 593 89 7828 44 4 0 chr11 71201858 71202826 -77580646 - L1P LINE L1 -896 5250 4279 698 158 8 16 chr11 71202854 71202981 -77580491 + LTR2B LTR ERV1 272 397 -93 1138 88 6 25 chr11 71202982 71203142 -77580330 - AluSc SINE Alu -152 157 1 1690 224 183 53 chr11 71203272 71203851 -77579621 + MLT1E1 LTR MaLR 1 654 0 2055 125 0 3 chr11 71203862 71204159 -77579313 + AluSc SINE Alu 1 296 -13 228 354 41 18 chr11 71204205 71204352 -77579120 - MIR3 SINE MIR -54 154 46 2115 105 0 0 chr11 71204525 71204810 -77578662 + AluSc SINE Alu 1 285 -24 30 0 0 0 chr11 71204894 71204924 -77578548 + AT_rich Low_complexity Low_complexity 1 30 0 5065 27 0 0 chr11 71204929 71205512 -77577960 - L1PA2 LINE L1 0 6155 5573 932 47 0 0 chr11 71205512 71205619 -77577853 - U6 snRNA snRNA 0 107 1 337 344 7 40 chr11 71205624 71205775 -77577697 - MIR SINE MIR -116 146 1 1834 159 0 0 chr11 71205830 71206126 -77577346 + AluSx SINE Alu 5 300 -12 869 238 42 75 chr11 71206214 71206470 -77577002 + MLT1I LTR MaLR 87 331 -78 1819 151 24 3 chr11 71206470 71206768 -77576704 + AluSx SINE Alu 1 304 -8 869 238 42 75 chr11 71206768 71206843 -77576629 + MLT1I LTR MaLR 331 407 -2 514 268 7 22 chr11 71207175 71207313 -77576159 - L2 LINE L2 0 3272 3137 6204 64 151 66 chr11 71207337 71208417 -77575055 - MER11A LTR ERVK 0 1266 1 1059 295 100 36 chr11 71208417 71209100 -77574372 - L2 LINE L2 -209 3104 2348 1348 183 0 59 chr11 71209100 71209422 -77574050 - AluJo SINE Alu -9 303 1 1059 295 100 36 chr11 71209422 71209628 -77573844 - L2 LINE L2 -965 2348 2156 208 349 27 41 chr11 71210299 71210445 -77573027 + L3 LINE CR1 1053 1196 -381 991 111 0 0 chr11 71210456 71210591 -77572881 + AluSq/x SINE Alu 1 135 -178 1483 134 0 5 chr11 71210591 71210815 -77572657 + AluSq SINE Alu 1 223 -90 1075 204 4 48 chr11 71210834 71210951 -77572521 + MER58A DNA MER1_type 1 105 -2315 2356 132 109 0 chr11 71210951 71211337 -77572135 - MSTA LTR MaLR 0 428 1 1075 204 4 48 chr11 71211337 71211450 -77572022 + MER58A DNA MER1_type 105 221 -3 204 102 41 61 chr11 71211460 71211509 -77571963 + GA-rich Low_complexity Low_complexity 3 50 0 261 309 89 8 chr11 71211517 71211640 -77571832 + L3 LINE CR1 1245 1377 -200 4127 106 2 0 chr11 71211647 71212204 -77571268 + LTR6B LTR ERV1 1 558 0 22586 129 22 2 chr11 71212207 71215374 -77568098 + HERVS71 LTR ERV1 5 3236 -5742 14501 130 10 8 chr11 71215383 71218230 -77565242 + HERVS71 LTR ERV1 4870 7786 -1192 2222 108 3 3 chr11 71218227 71218543 -77564929 + HERVS71 LTR ERV1 8594 8909 -69 * 4546 42 14 0 chr11 71218543 71219093 -77564379 + LTR6B LTR ERV1 1 558 0 2205 91 3 0 chr11 71219350 71219647 -77563825 - AluSp SINE Alu -15 298 1 292 276 195 14 chr11 71220265 71220475 -77562997 - MLT1H LTR MaLR 0 595 348 1878 107 186 57 chr11 71220626 71220980 -77562492 - MER4A LTR ERV1 -2 662 263 581 108 0 126 chr11 71220980 71221047 -77562425 - MER4A LTR ERV1 -566 98 49 2069 94 0 27 chr11 71221047 71221345 -77562127 - AluSx SINE Alu -22 290 1 581 108 0 126 chr11 71221345 71221388 -77562084 - MER4A LTR ERV1 -615 49 2 434 270 110 6 chr11 71221388 71221551 -77561921 - MLT1H LTR MaLR -356 193 14 252 86 0 0 chr11 71221556 71221591 -77561881 + (CA)n Simple_repeat Simple_repeat 1 35 0 1664 85 153 0 chr11 71221874 71222122 -77561350 - AluSx SINE Alu -17 295 10 369 260 53 94 chr11 71222317 71222582 -77560890 + MLT1K LTR MaLR 173 426 -162 1973 127 10 0 chr11 71222705 71223012 -77560460 + AluSg SINE Alu 1 310 0 1186 289 23 0 chr11 71223014 71223318 -77560154 + LTR16C LTR ERVL 164 474 -17 278 183 84 14 chr11 71223345 71223416 -77560056 + MLT1K LTR MaLR 512 587 -1 652 109 30 4 chr11 71223838 71224042 -77559430 + AluSx SINE Alu 2 296 -16 201 333 16 0 chr11 71224723 71224786 -77558686 - MIR SINE MIR 0 262 199 673 302 54 48 chr11 71224795 71225126 -77558346 - MLT1I LTR MaLR -8 401 69 265 247 312 19 chr11 71225171 71225325 -77558147 - MIR SINE MIR -61 201 3 336 223 8 74 chr11 71225706 71225827 -77557645 - MER58C DNA MER1_type 0 215 103 1403 204 23 41 chr11 71225838 71226181 -77557291 + L1MB5 LINE L1 5813 6149 -25 1349 212 20 0 chr11 71226188 71226481 -77556991 - AluJo SINE Alu -12 300 2 1744 136 3 52 chr11 71226643 71226952 -77556520 - AluJb SINE Alu -14 298 5 2242 113 0 0 chr11 71227114 71227423 -77556049 - AluSx SINE Alu -3 309 1 593 200 39 0 chr11 71227430 71227560 -77555912 - L1MB4 LINE L1 0 6180 6046 1131 200 25 39 chr11 71228074 71228354 -77555118 - AluJo SINE Alu -36 276 1 1855 167 0 0 chr11 71228379 71228690 -77554782 + AluSx SINE Alu 1 311 -1 22 35 0 0 chr11 71228709 71228738 -77554734 + AT_rich Low_complexity Low_complexity 1 29 0 333 322 59 38 chr11 71228758 71228997 -77554475 + L2 LINE L2 2710 2953 -361 265 250 74 116 chr11 71228996 71229280 -77554192 - L2 LINE L2 -91 3181 2910 * 42775 54 8 3 chr11 71229386 71232250 -77551222 + L1PA4 LINE L1 1 2849 -3306 7992 48 9 0 chr11 71232250 71233207 -77550265 + LTR5 LTR ERVK 1 966 -3 42775 54 8 3 chr11 71233207 71236465 -77547007 + L1PA4 LINE L1 2849 6155 0 2126 128 3 0 chr11 71236885 71237191 -77546281 + AluSx SINE Alu 1 307 -5 1145 215 24 12 chr11 71237234 71237481 -77545991 - MLT1E1 LTR MaLR 0 654 405 2007 95 34 0 chr11 71237505 71237780 -77545692 + AluSx SINE Alu 1 284 -28 195 0 39 0 chr11 71237780 71237806 -77545666 + (CAAA)n Simple_repeat Simple_repeat 2 180 0 1062 191 98 8 chr11 71237829 71238075 -77545397 - MLT1E1 LTR MaLR -384 270 3 2525 85 0 0 chr11 71238360 71238667 -77544805 + AluY SINE Alu 1 307 -4 1566 204 45 81 chr11 71238672 71239060 -77544412 - MLT1C LTR MaLR 0 467 98 2429 103 3 0 chr11 71239060 71239371 -77544101 - AluSp SINE Alu -1 312 1 1566 204 45 81 chr11 71239371 71239466 -77544006 - MLT1C LTR MaLR -369 98 1 338 236 42 0 chr11 71239476 71239548 -77543924 + AluJ/FLAM SINE Alu 1 75 -227 1705 173 31 10 chr11 71239589 71239878 -77543594 + AluJo SINE Alu 6 300 -12 246 228 0 0 chr11 71239958 71240012 -77543460 + Alu SINE Alu 77 121 -12 270 269 85 35 chr11 71240158 71240299 -77543173 - MLT1K LTR MaLR -325 263 116 434 276 86 9 chr11 71241146 71241262 -77542210 + MER91C DNA MER1_type 1 125 -15 1239 162 5 18 chr11 71241409 71241631 -77541841 - MER20 DNA MER1_type 0 219 1 1778 168 19 29 chr11 71242021 71242330 -77541142 + AluJo SINE Alu 1 306 -6 2194 126 0 0 chr11 71242334 71242636 -77540836 + AluY SINE Alu 1 302 -9 1723 188 14 3 chr11 71242636 71242923 -77540549 - AluSx SINE Alu -22 290 1 280 255 53 85 chr11 71242934 71243122 -77540350 - L1MC5 LINE L1 -44 7917 7736 461 276 145 0 chr11 71243276 71243428 -77540044 - MER5A DNA MER1_type -1 188 15 546 250 165 18 chr11 71243625 71243690 -77539782 - MLT1D LTR MaLR 0 484 430 2152 133 3 7 chr11 71243690 71243998 -77539474 + AluSq SINE Alu 1 307 -6 546 250 165 18 chr11 71243998 71244173 -77539299 - MLT1D LTR MaLR -54 430 206 1929 92 34 8 chr11 71244207 71244557 -77538915 + LTR7 LTR ERV1 1 448 -2 15365 95 28 16 chr11 71244559 71247392 -77536080 + HERVH LTR ERV1 1 2992 -4721 2054 103 3 12 chr11 71247378 71247683 -77535789 + HERVH LTR ERV1 3140 3441 -4272 60071 67 4 7 chr11 71247683 71255514 -77527958 + HERVE LTR ERV1 3 7812 -1 1546 221 47 44 chr11 71255603 71256011 -77527461 + LTR2 LTR ERV1 41 449 0 3856 86 6 0 chr11 71256011 71256560 -77526912 + HERVH LTR ERV1 3442 3993 -3720 4012 126 2 2 chr11 71256562 71257164 -77526308 + HERVH LTR ERV1 4488 5089 -2624 5608 41 1 3 chr11 71257164 71257847 -77525625 + MER11C LTR ERVK 1 682 -389 2299 102 10 3 chr11 71307870 71308174 -77475298 - AluSq SINE Alu -7 306 1 286 68 23 0 chr11 71308175 71308219 -77475253 + MLT1E2 LTR MaLR 561 605 -21 1078 179 0 48 chr11 71308368 71308597 -77474875 + AluJo SINE Alu 87 304 -8 2418 76 0 13 chr11 71308878 71309181 -77474291 - AluY SINE Alu -12 299 1 611 84 63 32 chr11 71309181 71309276 -77474196 - FLAM_A SINE Alu -11 131 34 1410 169 0 17 chr11 71309403 71309640 -77473832 + AluJb SINE Alu 78 310 -2 212 247 13 65 chr11 71310316 71310393 -77473079 + L2 LINE L2 3239 3311 -2 * 234 221 154 29 chr11 71310388 71310492 -77472980 + L2 LINE L2 1264 1380 -1934 755 219 77 44 chr11 71310928 71311268 -77472204 + MSTD LTR MaLR 1 396 0 2235 112 0 0 chr11 71311834 71312120 -77471352 + AluSx SINE Alu 1 286 -26 21 0 0 0 chr11 71318411 71318432 -77465040 + AT_rich Low_complexity Low_complexity 1 21 0 1805 124 0 0 chr11 71319046 71319288 -77464184 + AluSq SINE Alu 62 303 -10 21 71 0 0 chr11 71319515 71319557 -77463915 + AT_rich Low_complexity Low_complexity 1 42 0 386 331 234 14 chr11 71319876 71320637 -77462835 + L2 LINE L2 1861 2788 -526 270 294 18 55 chr11 71320716 71320825 -77462647 + L2 LINE L2 2954 3058 -214 264 276 92 11 chr11 71321617 71321704 -77461768 - MIR SINE MIR -75 133 40 183 200 25 0 chr11 71321954 71321994 -77461478 + L2 LINE L2 2906 2946 -368 1401 199 32 15 chr11 71322003 71322414 -77461058 + L1M4c LINE L1 2043 2460 -3924 1644 86 41 0 chr11 71322414 71322635 -77460837 + MER30 DNA MER1_type 1 230 0 1884 144 52 0 chr11 71322648 71322939 -77460533 - AluSx SINE Alu -6 306 1 1020 242 58 8 chr11 71323008 71323368 -77460104 + L1M4c LINE L1 2470 2847 -3535 2245 124 0 0 chr11 71323368 71323659 -77459813 + AluSx SINE Alu 1 291 -21 2304 101 3 0 chr11 71323659 71323955 -77459517 + AluSg SINE Alu 1 298 -12 864 207 0 0 chr11 71324075 71324225 -77459247 + FRAM SINE Alu 8 157 -19 452 188 214 0 chr11 71324262 71324379 -77459093 - MER5A DNA MER1_type 0 189 48 2403 102 0 0 chr11 71325320 71325625 -77457847 + AluSg SINE Alu 3 307 -3 225 132 0 26 chr11 71326537 71326575 -77456897 - MIR SINE MIR -79 183 147 204 359 0 0 chr11 71327007 71327071 -77456401 + CT-rich Low_complexity Low_complexity 2 65 0 450 95 0 0 chr11 71327491 71327554 -77455918 - AluSx SINE Alu -15 297 235 1478 86 5 5 chr11 71327554 71327740 -77455732 - AluSx SINE Alu -125 187 2 2571 68 0 0 chr11 71327925 71328236 -77455236 + AluY SINE Alu 1 311 0 2438 243 36 29 chr11 71328299 71328621 -77454851 + MER66-int LTR ERV1 5922 6240 -436 1203 420 33 0 chr11 71328621 71328923 -77454549 + AluSx SINE Alu 1 312 0 2438 243 36 29 chr11 71328923 71329329 -77454143 + MER66-int LTR ERV1 6240 6655 -21 1685 97 105 12 chr11 71329329 71329587 -77453885 + AluSx SINE Alu 16 297 -15 2256 72 0 7 chr11 71329587 71329864 -77453608 + AluY SINE Alu 1 275 -36 216 0 0 0 chr11 71329869 71329893 -77453579 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 1364 229 8 122 chr11 71329998 71330207 -77453265 + MER41B LTR ERV1 157 388 -247 2295 81 20 3 chr11 71330207 71330504 -77452968 + AluSc SINE Alu 1 302 -7 1978 88 70 7 chr11 71330504 71330787 -77452685 + AluSq SINE Alu 1 302 -11 1364 229 8 122 chr11 71330787 71331078 -77452394 + MER41B LTR ERV1 386 601 -34 2064 126 44 6 chr11 71331079 71331421 -77452051 - MER4C LTR ERV1 -110 355 1 814 276 35 28 chr11 71331421 71331740 -77451732 + L1ME3 LINE L1 5787 6107 -55 2165 115 0 16 chr11 71331740 71332045 -77451427 + AluSx SINE Alu 1 300 -12 2382 89 10 0 chr11 71332045 71332349 -77451123 + AluSp SINE Alu 1 307 -6 2101 124 31 0 chr11 71332367 71332657 -77450815 + AluSq SINE Alu 1 299 -14 530 140 0 11 chr11 71332669 71332762 -77450710 + L1MB3 LINE L1 6092 6183 0 1044 129 0 31 chr11 71332857 71333020 -77450452 - FRAM SINE Alu -6 160 3 2169 117 27 3 chr11 71333064 71333362 -77450110 + AluSx SINE Alu 1 305 -7 717 281 25 10 chr11 71333933 71334136 -77449336 - MIR SINE MIR 0 262 57 1223 136 0 0 chr11 71334485 71334654 -77448818 - AluJb SINE Alu -9 303 135 202 268 18 18 chr11 71334976 71335032 -77448440 - MIR SINE MIR -1 261 206 423 226 10 27 chr11 71335301 71335419 -77448053 - MIR SINE MIR -72 136 19 527 303 67 14 chr11 71335850 71336134 -77447338 - MLT1K LTR MaLR -200 388 90 358 327 143 37 chr11 71336428 71336645 -77446827 - MIR SINE MIR -2 260 21 2124 95 24 3 chr11 71336676 71336972 -77446500 - AluSc SINE Alu -2 307 6 1259 188 0 0 chr11 71336999 71337201 -77446271 + AluJb SINE Alu 82 283 -29 2456 65 0 3 chr11 71337232 71337549 -77445923 + AluY SINE Alu 1 316 0 253 363 86 41 chr11 71337753 71337867 -77445605 + L2 LINE L2 2968 3075 -197 243 0 0 0 chr11 71337867 71337894 -77445578 + (CA)n Simple_repeat Simple_repeat 2 28 0 253 363 86 41 chr11 71337894 71337947 -77445525 + L2 LINE L2 3075 3124 -148 396 68 41 0 chr11 71337947 71338020 -77445452 + (TG)n Simple_repeat Simple_repeat 2 77 0 253 363 86 41 chr11 71338020 71338143 -77445329 + L2 LINE L2 3124 3272 0 183 129 0 0 chr11 71338129 71338160 -77445312 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 * 185 235 165 24 chr11 71338717 71338802 -77444670 + MIR SINE MIR 42 138 -70 2004 87 0 4 chr11 71338863 71339116 -77444356 - AluSx SINE Alu -14 298 47 189 163 0 41 chr11 71339746 71339795 -77443677 - L2 LINE L2 -337 2977 2931 350 241 135 30 chr11 71340563 71340696 -77442776 - MIR SINE MIR -8 254 108 2098 83 69 0 chr11 71340816 71341093 -77442379 - AluY SINE Alu -15 296 1 237 329 85 41 chr11 71341093 71341331 -77442141 + L2 LINE L2 2843 3094 -178 2397 95 0 0 chr11 71342098 71342393 -77441079 + AluSx SINE Alu 1 295 -17 216 97 0 0 chr11 71342493 71342524 -77440948 + (A)n Simple_repeat Simple_repeat 1 31 0 1901 143 0 50 chr11 71342936 71343258 -77440214 + AluJb SINE Alu 1 306 -6 195 42 0 0 chr11 71343636 71343660 -77439812 + (T)n Simple_repeat Simple_repeat 1 24 0 21 36 0 0 chr11 71345159 71345187 -77438285 + AT_rich Low_complexity Low_complexity 1 28 0 2364 87 3 3 chr11 71345401 71345701 -77437771 + AluSx SINE Alu 1 300 -12 638 149 19 9 chr11 71345707 71345814 -77437658 - FLAM_A SINE Alu -34 108 1 30 45 0 0 chr11 71347523 71347567 -77435905 + AT_rich Low_complexity Low_complexity 1 44 0 1829 175 0 10 chr11 71347629 71347938 -77435534 - AluJo SINE Alu -6 306 1 393 249 34 54 chr11 71347939 71348070 -77435402 - L1MC/D LINE L1 -527 5594 5475 1816 109 54 22 chr11 71348070 71348346 -77435126 + AluSc SINE Alu 1 285 -24 393 249 34 54 chr11 71348346 71348407 -77435065 - L1MC/D LINE L1 -646 5475 5414 2330 100 0 3 chr11 71348518 71348817 -77434655 - AluSx SINE Alu -14 298 1 232 322 161 0 chr11 71349022 71349140 -77434332 + L2 LINE L2 3136 3272 0 301 293 30 10 chr11 71349322 71349421 -77434051 - MIR SINE MIR -73 189 89 627 216 40 14 chr11 71349546 71349694 -77433778 - L2 LINE L2 0 3313 3162 869 248 61 16 chr11 71349699 71349945 -77433527 - MIR SINE MIR -5 257 1 190 304 138 29 chr11 71352081 71352219 -77431253 + L2 LINE L2 3160 3312 -1 954 173 159 29 chr11 71352316 71352409 -77431063 - MER33 DNA MER1_type -2274 311 231 1997 103 18 28 chr11 71352409 71352713 -77430759 - AluSc SINE Alu 0 301 1 954 173 159 29 chr11 71352713 71352902 -77430570 - MER33 DNA MER1_type -2354 231 1 2241 106 0 0 chr11 71353235 71353517 -77429955 - AluSx SINE Alu -26 286 5 189 147 0 0 chr11 71353548 71353582 -77429890 + (TA)n Simple_repeat Simple_repeat 2 35 0 1218 169 36 5 chr11 71354201 71354420 -77429052 + AluJo SINE Alu 85 310 -2 878 212 76 0 chr11 71354455 71354639 -77428833 - MER46A DNA MER2_type -38 198 1 1669 168 0 50 chr11 71354703 71355024 -77428448 - AluJo SINE Alu -7 305 1 21 0 0 0 chr11 71355634 71355655 -77427817 + AT_rich Low_complexity Low_complexity 1 21 0 2275 90 35 0 chr11 71356095 71356385 -77427087 - AluSx SINE Alu -12 300 1 27 49 0 0 chr11 71356617 71356658 -77426814 + AT_rich Low_complexity Low_complexity 1 41 0 1946 128 17 17 chr11 71356684 71356980 -77426492 + AluSc SINE Alu 1 296 -13 312 336 23 8 chr11 71359102 71359230 -77424242 - MIR3 SINE MIR -43 165 36 204 359 0 0 chr11 71359799 71359863 -77423609 + GA-rich Low_complexity Low_complexity 2 65 0 211 71 0 0 chr11 71360305 71360333 -77423139 + MIR SINE MIR 156 183 -79 2388 101 0 0 chr11 71361245 71361551 -77421921 - AluSg SINE Alu -2 308 3 399 188 214 0 chr11 71362492 71362609 -77420863 + MER5A DNA MER1_type 48 189 0 846 207 0 0 chr11 71362646 71362796 -77420676 - FRAM SINE Alu -19 157 8 2543 63 3 0 chr11 71362916 71363217 -77420255 - AluSp SINE Alu -11 302 1 195 42 0 0 chr11 71363498 71363522 -77419950 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 2196 105 0 3 chr11 71363546 71363840 -77419632 - AluSx SINE Alu -19 293 1 2219 119 7 0 chr11 71363847 71364141 -77419331 - AluSx SINE Alu -16 296 1 2248 129 0 3 chr11 71364270 71364573 -77418899 + AluSx SINE Alu 1 302 -10 2362 81 3 10 chr11 71365393 71365688 -77417784 - AluSq SINE Alu -19 294 2 271 255 71 20 chr11 71366584 71366682 -77416790 - MIR SINE MIR -93 169 67 275 122 0 6 chr11 71367138 71367182 -77416290 - L1MB8 LINE L1 -5 6173 6133 2068 135 0 7 chr11 71367182 71367479 -77415993 - AluJo SINE Alu -17 295 1 2139 201 108 2 chr11 71367483 71368004 -77415468 - L1M4 LINE L1 -3113 3033 2458 2574 74 0 0 chr11 71368196 71368505 -77414967 - AluY SINE Alu -2 309 1 1540 177 0 55 chr11 71368527 71368838 -77414634 - AluJb SINE Alu -16 296 3 21 0 0 0 chr11 71369799 71369820 -77413652 + AT_rich Low_complexity Low_complexity 1 21 0 555 157 0 113 chr11 71370436 71370551 -77412921 + Tigger3b DNA MER2_type 1 102 -1129 * 4756 134 58 42 chr11 71370549 71370883 -77412589 + Tigger3b DNA MER2_type 274 601 -2427 1570 158 79 11 chr11 71370883 71371162 -77412310 + AluJo SINE Alu 1 298 -14 1773 169 23 0 chr11 71371172 71371355 -77412117 - AluJo SINE Alu -4 308 114 315 0 0 0 chr11 71371355 71371390 -77412082 + (TG)n Simple_repeat Simple_repeat 2 36 0 1773 169 23 0 chr11 71371390 71371507 -77411965 - AluJo SINE Alu -198 114 1 4756 134 58 42 chr11 71371507 71371526 -77411946 + Tigger3b DNA MER2_type 609 626 -2402 2089 125 0 0 chr11 71371526 71371806 -77411666 - AluSx SINE Alu -23 289 10 4756 134 58 42 chr11 71371806 71372360 -77411112 + Tigger3b DNA MER2_type 626 1207 -24 474 206 0 52 chr11 71372371 71372468 -77411004 + Tigger3b DNA MER2_type 1140 1231 -1 365 235 102 0 chr11 71372563 71372661 -77410811 + L2 LINE L2 3191 3298 -15 270 215 76 0 chr11 71373301 71373380 -77410092 - MIR3 SINE MIR -7 201 117 949 179 6 12 chr11 71373982 71374144 -77409328 - FRAM SINE Alu -14 162 2 2175 119 0 7 chr11 71374371 71374674 -77408798 - AluSx SINE Alu -11 301 1 1301 205 60 21 chr11 71375076 71375359 -77408113 + AluJo SINE Alu 1 294 -18 21 36 0 0 chr11 71375370 71375398 -77408074 + AT_rich Low_complexity Low_complexity 1 28 0 438 236 19 70 chr11 71375453 71375610 -77407862 + MIR SINE MIR 58 206 -56 1990 139 0 0 chr11 71376056 71376336 -77407136 + AluJb SINE Alu 1 280 -32 189 0 0 0 chr11 71376336 71376357 -77407115 + (TAAAA)n Simple_repeat Simple_repeat 1 21 0 196 221 122 99 chr11 71376390 71376521 -77406951 + L2 LINE L2 2937 3070 -202 2265 99 0 13 chr11 71377152 71377454 -77406018 - AluSc SINE Alu -11 298 1 386 211 49 73 chr11 71377454 71377577 -77405895 + MER5A DNA MER1_type 65 184 -5 1907 116 14 14 chr11 71378310 71378594 -77404878 + AluSx SINE Alu 28 311 -1 504 0 0 0 chr11 71378619 71378675 -77404797 + (CAAGA)n Simple_repeat Simple_repeat 2 57 0 2339 92 0 0 chr11 71378911 71379205 -77404267 - AluY SINE Alu -17 294 1 417 256 29 58 chr11 71379324 71379461 -77404011 - L2 LINE L2 -23 3290 3158 945 231 115 124 chr11 71379630 71380475 -77402997 - L2 LINE L2 -423 2891 2055 1693 133 77 35 chr11 71381974 71382260 -77401212 + AluJb SINE Alu 1 298 -14 2426 93 0 0 chr11 71382724 71383025 -77400447 - AluSg SINE Alu -9 301 1 749 161 44 7 chr11 71383025 71383162 -77400310 - L1M3 LINE L1 -441 5739 5598 2347 86 0 0 chr11 71383162 71383452 -77400020 - AluSg SINE Alu -20 290 1 1257 182 133 62 chr11 71384405 71384790 -77398682 + MLT1D LTR MaLR 1 303 -62 2285 102 10 3 chr11 71384790 71385095 -77398377 - AluSq SINE Alu -6 307 1 1257 182 133 62 chr11 71385095 71385155 -77398317 + MLT1D LTR MaLR 303 357 -8 1044 179 0 48 chr11 71385289 71385518 -77397954 + AluJo SINE Alu 87 304 -8 2363 90 0 0 chr11 71385799 71386098 -77397374 - AluY SINE Alu -12 299 1 223 309 64 27 chr11 71386680 71386790 -77396682 + MIR SINE MIR 9 122 -140 2189 48 104 0 chr11 71387139 71387408 -77396064 + AluY SINE Alu 1 297 -14 2298 110 0 0 chr11 71387689 71387989 -77395483 + AluSg SINE Alu 1 300 -10 1377 168 3 44 chr11 71389892 71390213 -77393259 + AluSg SINE Alu 1 308 -2 2151 116 3 0 chr11 71390239 71390531 -77392941 - AluSg SINE Alu -17 293 1 2350 85 0 20 chr11 71390561 71390867 -77392605 + AluSg SINE Alu 1 300 -10 212 269 174 36 chr11 71390901 71391068 -77392404 - L2 LINE L2 -77 3236 3047 788 247 17 6 chr11 71391085 71391263 -77392209 + AluJb SINE Alu 123 302 -10 233 225 42 42 chr11 71391639 71391710 -77391762 - L2 LINE L2 0 3313 3243 244 325 86 0 chr11 71392032 71392149 -77391323 - MIR SINE MIR -85 177 51 2136 83 72 0 chr11 71392249 71392539 -77390933 - AluY SINE Alu 0 311 1 26 0 0 0 chr11 71396538 71396564 -77386908 + GC_rich Low_complexity Low_complexity 1 26 0 226 315 81 0 chr11 71396811 71396922 -77386550 - MIR SINE MIR -82 180 61 2174 120 20 0 chr11 71399224 71399525 -77383947 + AluSx SINE Alu 1 307 -5 376 314 8 17 chr11 71399597 71399715 -77383757 + MIR SINE MIR 26 142 -120 329 263 179 51 chr11 71399719 71399993 -77383479 + L2 LINE L2 2175 2483 -831 2392 109 0 0 chr11 71399996 71400309 -77383163 - AluSq SINE Alu 0 313 1 385 345 6 18 chr11 71400347 71400512 -77382960 + L2 LINE L2 3117 3279 -34 27 29 0 0 chr11 71400938 71400972 -77382500 + AT_rich Low_complexity Low_complexity 1 34 0 2366 118 0 6 chr11 71400974 71401288 -77382184 + AluSx SINE Alu 1 312 0 426 259 36 42 chr11 71401312 71401478 -77381994 - L1MC4 LINE L1 -638 7404 7240 1004 156 0 15 chr11 71401478 71401784 -77381688 + (TA)n Simple_repeat Simple_repeat 1 301 0 215 225 14 0 chr11 71401858 71401929 -77381543 + CT-rich Low_complexity Low_complexity 2 73 0 1297 246 44 35 chr11 71401934 71402344 -77381128 + L1ME2 LINE L1 5696 6112 -52 1753 142 3 62 chr11 71402344 71402514 -77380958 - AluJb SINE Alu -9 303 157 2284 115 0 0 chr11 71402514 71402810 -77380662 - AluSx SINE Alu -15 297 2 1753 142 3 62 chr11 71402810 71402948 -77380524 - AluJb SINE Alu -155 157 13 1297 246 44 35 chr11 71402948 71402992 -77380480 + L1ME2 LINE L1 6112 6154 -10 1942 133 11 0 chr11 71403246 71403373 -77380099 + AluSx SINE Alu 1 125 -179 441 0 0 0 chr11 71403373 71403422 -77380050 + (CA)n Simple_repeat Simple_repeat 2 50 0 1942 133 11 0 chr11 71403422 71403595 -77379877 + AluSx SINE Alu 125 304 0 987 153 25 20 chr11 71404069 71404265 -77379207 + MLT2B2 LTR ERVL 1 197 -318 335 68 0 85 chr11 71404264 71404323 -77379149 - MLT1A2 LTR MaLR -320 54 1 * 2153 85 29 39 chr11 71404504 71404811 -77378661 + AluY SINE Alu 1 304 -7 2485 93 0 0 chr11 71405098 71405409 -77378063 + AluSp SINE Alu 1 311 -2 2187 196 27 19 chr11 71405417 71405856 -77377616 + L1MB3 LINE L1 5689 6134 -49 2267 119 0 7 chr11 71405856 71406159 -77377313 + AluSx SINE Alu 1 301 -11 2187 196 27 19 chr11 71406159 71406203 -77377269 + L1MB3 LINE L1 6134 6176 -7 375 166 139 0 chr11 71406277 71406369 -77377103 - MIR SINE MIR -68 140 61 641 146 0 27 chr11 71406537 71406647 -77376825 - AluSx SINE Alu -8 301 195 1037 111 0 0 chr11 71406647 71406782 -77376690 - AluSx SINE Alu -178 135 1 868 271 72 7 chr11 71407142 71407434 -77376038 - LTR16C LTR ERVL 0 491 181 515 206 56 8 chr11 71407580 71407706 -77375766 - HsTC2 DNA Tc2 -248 1650 1519 649 244 122 17 chr11 71407710 71408052 -77375420 - LTR16A LTR ERVL 0 450 18 448 262 163 21 chr11 71408205 71408438 -77375034 + LTR16C LTR ERVL 224 489 -2 283 255 176 13 chr11 71408616 71408769 -77374703 - L2 LINE L2 -1866 1448 1271 619 318 94 36 chr11 71409084 71409220 -77374252 - L2 LINE L2 -33 3280 3153 2426 109 0 0 chr11 71409220 71409531 -77373941 + AluSx SINE Alu 1 311 -1 619 318 94 36 chr11 71409531 71409910 -77373562 - L2 LINE L2 -160 3153 2742 293 263 40 0 chr11 71409937 71410036 -77373436 - L1MC4 LINE L1 -1 8041 7939 2262 196 21 85 chr11 71410061 71410201 -77373271 + MER82 DNA MER2_type 62 209 -444 2625 33 0 3 chr11 71410201 71410500 -77372972 + AluY SINE Alu 1 298 -13 2174 134 3 0 chr11 71410506 71410813 -77372659 - AluSx SINE Alu -4 308 1 2262 196 21 85 chr11 71410813 71411291 -77372181 + MER82 DNA MER2_type 214 647 -6 744 242 312 6 chr11 71411293 71411652 -77371820 - L1MC4 LINE L1 -148 7894 7426 * 3071 143 8 93 chr11 71411650 71411857 -77371615 - L1M4c LINE L1 -4014 2370 2147 2862 87 0 13 chr11 71411857 71412237 -77371235 - THE1C LTR MaLR 0 375 1 3071 143 8 93 chr11 71412237 71412538 -77370934 - L1M4c LINE L1 -4237 2147 1943 2218 104 0 14 chr11 71412538 71412855 -77370617 - AluSq SINE Alu 0 313 1 3071 143 8 93 chr11 71412855 71413098 -77370374 - L1M4c LINE L1 -4441 1943 1681 1824 183 26 7 chr11 71413108 71413414 -77370058 - AluJb SINE Alu 0 312 1 1688 167 14 31 chr11 71413466 71413759 -77369713 + AluJb SINE Alu 1 288 -24 7934 128 23 102 chr11 71414180 71414246 -77369226 - L1M4c LINE L1 -4730 1654 1584 2242 115 7 0 chr11 71414246 71414551 -77368921 - AluSc SINE Alu -2 307 1 7934 128 23 102 chr11 71414551 71414585 -77368887 - L1M4c LINE L1 -4800 1584 1549 2153 96 0 0 chr11 71414585 71414856 -77368616 + AluY SINE Alu 39 309 -2 7934 128 23 102 chr11 71414856 71414992 -77368480 - L1M4c LINE L1 -4835 1549 1404 2240 106 3 0 chr11 71414992 71415307 -77368165 - AluSp SINE Alu 0 316 1 7934 128 23 102 chr11 71415307 71415376 -77368096 - L1M4c LINE L1 -4980 1404 1331 2127 123 0 0 chr11 71415376 71415683 -77367789 - AluSx SINE Alu 0 307 1 7934 128 23 102 chr11 71415683 71415695 -77367777 - L1M4c LINE L1 -5053 1331 1320 1667 165 0 16 chr11 71415695 71415950 -77367522 - AluJo SINE Alu -25 287 37 7934 128 23 102 chr11 71415950 71415965 -77367507 - L1M4c LINE L1 -5064 1320 1305 189 0 0 0 chr11 71415965 71415986 -77367486 + (TC)n Simple_repeat Simple_repeat 2 22 0 1592 169 56 15 chr11 71415986 71416142 -77367330 - AluJo SINE Alu -27 285 112 360 43 0 0 chr11 71416142 71416188 -77367284 + (TTTG)n Simple_repeat Simple_repeat 3 48 0 1592 169 56 15 chr11 71416188 71416297 -77367175 - AluJo SINE Alu -200 112 9 7934 128 23 102 chr11 71416297 71417164 -77366308 - L1M4c LINE L1 -5078 1306 372 2367 84 0 16 chr11 71417164 71417472 -77366000 + AluSc SINE Alu 1 303 -6 7934 128 23 102 chr11 71417472 71417666 -77365806 - L1M4c LINE L1 -6012 372 418 2358 98 0 0 chr11 71417666 71417962 -77365510 + AluSx SINE Alu 1 296 -16 7934 128 23 102 chr11 71417962 71418335 -77365137 - L1M4c LINE L1 -5965 419 18 827 229 74 63 chr11 71418338 71418512 -77364960 - L1M4 LINE L1 -904 5242 5071 1659 115 5 0 chr11 71418512 71418730 -77364742 - AluSx SINE Alu -93 219 1 827 229 74 63 chr11 71418730 71418893 -77364579 - L1M4 LINE L1 -1075 5071 4898 2137 77 21 98 chr11 71418893 71419231 -77364241 - AluYb8 SINE Alu -4 314 3 827 229 74 63 chr11 71419231 71419258 -77364214 - L1M4 LINE L1 -1248 4898 4873 1104 208 21 45 chr11 71419268 71419450 -77364022 - L1M4 LINE L1 -1408 4738 4553 2505 58 14 0 chr11 71419450 71419743 -77363729 - AluY SINE Alu -14 297 1 1104 208 21 45 chr11 71419743 71419763 -77363709 - L1M4 LINE L1 -1593 4553 4534 387 0 0 0 chr11 71419763 71419806 -77363666 + (TG)n Simple_repeat Simple_repeat 2 44 0 1104 208 21 45 chr11 71419806 71419938 -77363534 - L1M4 LINE L1 -1612 4534 4411 2936 224 43 54 chr11 71419989 71420767 -77362705 + L1MEc LINE L1 164 930 -5466 2463 76 7 0 chr11 71420767 71421058 -77362414 + AluSc SINE Alu 1 293 -16 2936 224 43 54 chr11 71421058 71421236 -77362236 + L1MEc LINE L1 930 1109 -5287 2513 72 0 13 chr11 71421236 71421541 -77361931 + AluY SINE Alu 1 301 -10 779 218 39 70 chr11 71421571 71421737 -77361735 + L1MEc LINE L1 1706 1861 -4535 3233 159 38 23 chr11 71421737 71422271 -77361201 - L1MA7 LINE L1 -10 6281 5734 2150 142 3 3 chr11 71422271 71422582 -77360890 - AluSx SINE Alu -1 311 1 3233 159 38 23 chr11 71422582 71422700 -77360772 - L1MA7 LINE L1 -557 5734 5619 779 218 39 70 chr11 71422700 71422817 -77360655 + L1MEc LINE L1 1861 1980 -4416 1838 150 11 0 chr11 71422817 71423090 -77360382 - AluJo SINE Alu -16 296 21 1929 149 162 11 chr11 71423093 71423463 -77360009 - MSTA LTR MaLR -2 426 1 1307 186 30 48 chr11 71423487 71423667 -77359805 + L1MEc LINE L1 1972 2154 -4242 1911 164 30 0 chr11 71423667 71423965 -77359507 + AluJb SINE Alu 1 307 -5 1307 186 30 48 chr11 71423965 71424177 -77359295 + L1MEc LINE L1 2154 2357 -4039 2203 136 0 0 chr11 71424179 71424480 -77358992 - AluSx SINE Alu -11 301 1 721 200 0 36 chr11 71424485 71424625 -77358847 - FLAM_C SINE Alu -7 136 2 1181 249 14 0 chr11 71424627 71424980 -77358492 + L1MEc LINE L1 2305 2662 -3553 220 167 95 12 chr11 71424983 71425067 -77358405 + (TTAA)n Simple_repeat Simple_repeat 1 91 0 2043 129 20 14 chr11 71425073 71425367 -77358105 + AluSx SINE Alu 1 296 -16 1936 249 92 13 chr11 71425379 71426074 -77357398 + L1MEc LINE L1 3283 4032 -2183 816 106 0 92 chr11 71426074 71426216 -77357256 + FLAM_C SINE Alu 1 129 -4 256 135 81 0 chr11 71426218 71426292 -77357180 + (TTAA)n Simple_repeat Simple_repeat 4 83 0 2252 99 0 24 chr11 71426300 71426594 -77356878 - AluSx SINE Alu -25 287 1 1396 214 10 51 chr11 71426597 71426910 -77356562 - AluJo SINE Alu -12 300 1 1864 107 17 114 chr11 71426917 71427154 -77356318 - Tigger3b DNA MER2_type -2454 574 316 2165 144 24 27 chr11 71427154 71427530 -77355942 + THE1C LTR MaLR 1 375 0 294 29 0 0 chr11 71427534 71427569 -77355903 + (TA)n Simple_repeat Simple_repeat 2 36 0 1864 107 17 114 chr11 71427569 71427609 -77355863 - Tigger3b DNA MER2_type -2715 313 271 261 0 0 0 chr11 71427609 71427638 -77355834 + (CA)n Simple_repeat Simple_repeat 2 30 0 1864 107 17 114 chr11 71427638 71427767 -77355705 - Tigger3b DNA MER2_type -2757 271 202 1096 178 25 83 chr11 71427767 71428009 -77355463 - AluJo SINE Alu -17 295 68 2119 311 61 17 chr11 71428021 71428293 -77355179 + L1M4c LINE L1 1603 1862 -4522 1494 96 0 0 chr11 71428293 71428480 -77354992 - AluSg/x SINE Alu 0 312 126 2119 311 61 17 chr11 71428480 71428580 -77354892 + L1M4c LINE L1 1862 1956 -4428 2404 97 0 0 chr11 71428580 71428879 -77354593 + AluY SINE Alu 13 311 0 2119 311 61 17 chr11 71428879 71429327 -77354145 + L1M4c LINE L1 1956 2460 -3924 1644 86 41 0 chr11 71429327 71429548 -77353924 + MER30 DNA MER1_type 1 230 0 1884 144 52 0 chr11 71429561 71429852 -77353620 - AluSx SINE Alu -6 306 1 1865 228 43 44 chr11 71429921 71430281 -77353191 + L1M4c LINE L1 2470 2829 -3553 2245 124 0 0 chr11 71430281 71430572 -77352900 + AluSx SINE Alu 1 291 -21 2223 102 41 0 chr11 71430572 71430864 -77352608 + AluSg SINE Alu 1 305 -5 1865 228 43 44 chr11 71430864 71431131 -77352341 + L1M4c LINE L1 2828 3100 -3282 1937 134 22 7 chr11 71431131 71431431 -77352041 - AluSq SINE Alu 0 308 5 1865 228 43 44 chr11 71431431 71431479 -77351993 + L1M4c LINE L1 3100 3147 -3235 2007 129 36 22 chr11 71431493 71431849 -77351623 + THE1C LTR MaLR 10 370 -5 850 228 17 4 chr11 71431851 71432126 -77351346 + L1M4c LINE L1 3139 3423 -2959 518 140 0 40 chr11 71432136 71432194 -77351278 + HY3 scRNA scRNA 1 55 -46 2527 87 3 0 chr11 71432194 71432505 -77350967 - AluSp SINE Alu -1 312 1 518 140 0 40 chr11 71432505 71432546 -77350926 + HY3 scRNA scRNA 55 96 -5 318 160 8 34 chr11 71432605 71432724 -77350748 + (TAGA)n Simple_repeat Simple_repeat 2 117 0 2435 194 40 17 chr11 71432724 71433081 -77350391 - MLT2B3 LTR ERVL -20 534 160 2647 91 13 13 chr11 71433081 71433456 -77350016 + THE1C LTR MaLR 1 375 0 2435 194 40 17 chr11 71433456 71433618 -77349854 - MLT2B3 LTR ERVL -394 160 3 312 180 0 0 chr11 71433640 71433690 -77349782 + L1M4c LINE L1 3448 3497 -2885 1326 155 58 25 chr11 71433715 71433992 -77349480 + L1MB4 LINE L1 5894 6179 -1 1785 180 45 56 chr11 71433995 71434356 -77349116 + MLT1E LTR MaLR 153 531 -62 2186 113 0 7 chr11 71434356 71434657 -77348815 - AluY SINE Alu -12 299 1 1785 180 45 56 chr11 71434657 71434720 -77348752 + MLT1E LTR MaLR 531 593 0 2262 109 0 0 chr11 71434792 71435086 -77348386 - AluSx SINE Alu -18 294 1 2231 116 0 10 chr11 71435289 71435599 -77347873 - AluSx SINE Alu -5 307 1 237 267 128 0 chr11 71435710 71435796 -77347676 + L2 LINE L2 3138 3234 -38 1896 120 25 0 chr11 71435842 71436125 -77347347 - AluJo SINE Alu -22 290 1 213 209 0 0 chr11 71436315 71436358 -77347114 + GA-rich Low_complexity Low_complexity 2 44 0 353 279 114 7 chr11 71436876 71437016 -77346456 + MIR SINE MIR 28 182 -80 184 292 202 0 chr11 71437039 71437128 -77346344 + L2 LINE L2 2261 2367 -947 2206 128 0 0 chr11 71437182 71437480 -77345992 + AluSx SINE Alu 1 298 -14 453 264 155 31 chr11 71437484 71437677 -77345795 + MIR SINE MIR 2 218 -44 216 347 58 22 chr11 71437713 71437938 -77345534 + L2 LINE L2 2420 2652 -662 2243 103 0 32 chr11 71438006 71438318 -77345154 - AluSx SINE Alu -10 302 1 364 291 85 7 chr11 71438759 71438905 -77344567 - L2 LINE L2 -525 2789 2633 1919 90 59 7 chr11 71439391 71439679 -77343793 + AluSq SINE Alu 1 303 -10 326 296 20 0 chr11 71439974 71440072 -77343400 + MIR SINE MIR 40 139 -123 1898 131 28 0 chr11 71441080 71441363 -77342109 + AluSx SINE Alu 1 291 -21 193 284 15 15 chr11 71442384 71442451 -77341021 - MIR SINE MIR -116 146 80 220 271 271 0 chr11 71442596 71442718 -77340754 + MIR SINE MIR 20 174 -88 1077 173 0 6 chr11 71446457 71446797 -77336675 + (TCCA)n Simple_repeat Simple_repeat 3 513 0 2010 118 10 0 chr11 71446907 71447203 -77336269 - AluSx SINE Alu -13 299 1 444 171 19 38 chr11 71447204 71447309 -77336163 - L1ME1 LINE L1 -339 5827 5725 2915 208 67 48 chr11 71447321 71447634 -77335838 + MER21B LTR ERV1 12 318 -545 2195 113 0 0 chr11 71447634 71447934 -77335538 + AluSp SINE Alu 1 300 -13 2915 208 67 48 chr11 71447934 71448385 -77335087 + MER21B LTR ERV1 318 790 -73 1414 185 11 28 chr11 71448386 71448698 -77334774 + AluJo SINE Alu 1 307 0 1174 169 72 4 chr11 71448745 71448981 -77334491 - L1ME1 LINE L1 -433 5733 5482 450 205 62 20 chr11 71448990 71449138 -77334334 + L1ME3A LINE L1 6003 6162 -2 2265 104 0 0 chr11 71449730 71450038 -77333434 + AluSx SINE Alu 3 310 -2 287 300 10 30 chr11 71450069 71450169 -77333303 - MIR SINE MIR -29 233 136 1366 216 36 76 chr11 71450174 71450623 -77332849 - MER82 DNA MER2_type 0 653 223 2968 135 39 0 chr11 71450623 71451089 -77332383 - MER41E LTR ERV1 0 512 29 876 154 8 127 chr11 71451172 71451218 -77332254 - MER82 DNA MER2_type -429 224 174 2088 142 0 0 chr11 71451218 71451529 -77331943 - AluSx SINE Alu -1 311 1 876 154 8 127 chr11 71451529 71451735 -77331737 - MER82 DNA MER2_type -479 174 2 254 340 85 0 chr11 71451735 71451841 -77331631 - MIR SINE MIR -130 132 18 578 217 124 6 chr11 71452234 71452395 -77331077 - MER58A DNA MER1_type -2 222 43 636 137 0 46 chr11 71452395 71452526 -77330946 + AluYb8 SINE Alu 2 126 -192 1416 52 0 6 chr11 71452534 71452707 -77330765 - AluY SINE Alu -139 172 1 1486 113 121 4 chr11 71452707 71452946 -77330526 - AluSx SINE Alu -6 306 40 1427 277 49 5 chr11 71452946 71453499 -77329973 - L1M4 LINE L1 -3093 3053 2477 1511 207 42 39 chr11 71453500 71453604 -77329868 + MER89 LTR ERV1 99 201 -358 1462 157 96 43 chr11 71453604 71453884 -77329588 - AluSg SINE Alu -5 295 1 1511 207 42 39 chr11 71453884 71454136 -77329336 + MER89 LTR ERV1 201 456 -103 679 221 0 0 chr11 71454136 71454267 -77329205 - FRAM SINE Alu -1 175 45 1507 173 36 4 chr11 71454327 71454605 -77328867 + AluJb SINE Alu 6 292 -20 2099 197 67 9 chr11 71455600 71455882 -77327590 + Charlie1 DNA MER1_type 2193 2457 -304 2310 95 0 0 chr11 71455882 71456187 -77327285 + AluY SINE Alu 1 305 -6 2099 197 67 9 chr11 71456187 71456442 -77327030 + Charlie1 DNA MER1_type 2457 2761 0 465 245 123 12 chr11 71456578 71456741 -77326731 + MLT1A1 LTR MaLR 185 365 0 1660 160 61 26 chr11 71456741 71456919 -77326553 + L1MC3 LINE L1 7429 7599 -186 2200 91 3 0 chr11 71456919 71457217 -77326255 + AluY SINE Alu 2 300 -11 1660 160 61 26 chr11 71457217 71457381 -77326091 + L1MC3 LINE L1 7599 7783 -2 330 316 26 35 chr11 71457382 71457496 -77325976 + L1M4 LINE L1 4141 4253 -1893 2627 20 0 0 chr11 71457500 71457796 -77325676 + AluY SINE Alu 1 296 -15 3522 215 54 25 chr11 71457796 71458723 -77324749 + L1MC4a LINE L1 6855 7808 0 424 266 42 70 chr11 71458767 71459018 -77324454 + L1M4 LINE L1 4316 4553 -1593 2032 117 10 10 chr11 71459018 71459180 -77324292 - AluSx SINE Alu -14 298 134 2340 78 7 0 chr11 71459180 71459487 -77323985 - AluY SINE Alu -1 310 2 2032 117 10 10 chr11 71459487 71459622 -77323850 - AluSx SINE Alu -177 135 1 424 266 42 70 chr11 71459622 71459772 -77323700 + L1M4 LINE L1 4553 4706 -1440 1697 139 36 7 chr11 71459910 71460269 -77323203 + AluJo SINE Alu 1 367 0 463 239 74 0 chr11 71460273 71460436 -77323036 + L1ME4a LINE L1 5947 6121 0 1714 161 0 20 chr11 71460445 71460737 -77322735 + AluJo SINE Alu 1 286 -26 348 43 0 0 chr11 71460738 71460784 -77322688 + (CATA)n Simple_repeat Simple_repeat 2 47 0 235 267 105 19 chr11 71461271 71461376 -77322096 + MIR SINE MIR 59 127 -81 291 333 68 68 chr11 71462026 71462108 -77321364 - MIR SINE MIR -66 196 115 1772 151 20 3 chr11 71462108 71462400 -77321072 + AluJb SINE Alu 2 298 -14 291 333 68 68 chr11 71462400 71462494 -77320978 - MIR SINE MIR -146 116 20 319 323 77 0 chr11 71462786 71462916 -77320556 + MIR SINE MIR 59 198 -64 2184 104 20 0 chr11 71464339 71464638 -77318834 - AluSq SINE Alu -8 305 1 225 65 0 0 chr11 71464638 71464669 -77318803 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1767 104 54 40 chr11 71464669 71464947 -77318525 - AluSc SINE Alu -27 282 1 257 236 4 0 chr11 71465078 71465152 -77318320 + MIR SINE MIR 46 121 -87 266 284 57 0 chr11 71465299 71465387 -77318085 + MER115 DNA AcHobo 112 204 -489 318 321 74 6 chr11 71465460 71465622 -77317850 + MER115 DNA AcHobo 445 617 -76 26 0 0 0 chr11 71465645 71465671 -77317801 + AT_rich Low_complexity Low_complexity 1 26 0 2005 120 0 17 chr11 71465677 71465977 -77317495 - AluSq SINE Alu -8 305 11 1146 131 0 6 chr11 71466083 71466258 -77317214 + AluJb SINE Alu 137 310 -2 2349 67 0 19 chr11 71466368 71466683 -77316789 - AluY SINE Alu -2 309 1 1177 23 0 0 chr11 71466683 71466816 -77316656 - AluY SINE Alu -178 133 1 1960 120 41 3 chr11 71466963 71467255 -77316217 + AluSx SINE Alu 1 303 -9 406 222 152 10 chr11 71467365 71467464 -77316008 - MER81 DNA DNA -1 113 1 833 128 0 0 chr11 71468006 71468152 -77315320 - AluJb SINE Alu 0 311 166 8120 165 23 34 chr11 71468152 71468382 -77315090 + MSTA-int LTR MaLR 156 387 -1264 1913 142 3 7 chr11 71468382 71468678 -77314794 - AluSc SINE Alu -14 295 1 8120 165 23 34 chr11 71468678 71469959 -77313513 + MSTA-int LTR MaLR 387 1651 0 2170 161 82 25 chr11 71469959 71470322 -77313150 + MSTA LTR MaLR 1 391 -37 2137 124 0 0 chr11 71470322 71470628 -77312844 - AluSq SINE Alu -7 306 1 2170 161 82 25 chr11 71470628 71470669 -77312803 + MSTA LTR MaLR 391 428 0 231 180 60 0 chr11 71470670 71470720 -77312752 + MIR SINE MIR 92 144 -118 1772 213 82 34 chr11 71470738 71471022 -77312450 - MLT1D LTR MaLR 0 505 187 2147 114 0 0 chr11 71471022 71471321 -77312151 - AluSq SINE Alu -14 299 1 1772 213 82 34 chr11 71471321 71471514 -77311958 - MLT1D LTR MaLR -318 187 5 1458 97 5 0 chr11 71471882 71472078 -77311394 + AluSp SINE Alu 97 293 -20 726 133 0 96 chr11 71472088 71472223 -77311249 + AluJ SINE Alu 14 135 -177 1565 176 35 3 chr11 71472270 71472554 -77310918 + AluJb SINE Alu 1 293 -19 994 183 0 0 chr11 71472554 71472723 -77310749 + AluJ SINE Alu 134 302 -10 243 276 0 92 chr11 71472751 71472849 -77310623 - MIR SINE MIR -70 192 104 1295 93 0 0 chr11 71473630 71473802 -77309670 - AluSg/x SINE Alu -8 304 133 2462 55 0 13 chr11 71473809 71474116 -77309356 - AluY SINE Alu -8 303 1 2100 113 0 7 chr11 71474116 71474416 -77309056 - AluSg SINE Alu -12 298 1 21 0 0 0 chr11 71474464 71474485 -77308987 + AT_rich Low_complexity Low_complexity 1 21 0 260 305 43 55 chr11 71474674 71474838 -77308634 + L2 LINE L2 2575 2736 -578 * 788 244 113 68 chr11 71474829 71475165 -77308307 - L2 LINE L2 0 3313 2963 2072 115 0 0 chr11 71475233 71475519 -77307953 + AluSx SINE Alu 14 299 -13 1003 122 0 0 chr11 71475520 71475659 -77307813 + AluJo/FRAM SINE Alu 166 304 -8 528 257 257 32 chr11 71475660 71476065 -77307407 - L2 LINE L2 -350 2964 2469 199 276 185 55 chr11 71476169 71476499 -77306973 + L2 LINE L2 2851 3223 -90 363 235 47 54 chr11 71476596 71476745 -77306727 - MIR SINE MIR -92 170 23 211 286 26 0 chr11 71477117 71477194 -77306278 + MIR SINE MIR 62 140 -68 24 0 0 0 chr11 71477231 71477255 -77306217 + GC_rich Low_complexity Low_complexity 1 24 0 36 82 0 0 chr11 71477294 71477379 -77306093 + GC_rich Low_complexity Low_complexity 1 85 0 705 118 0 0 chr11 71477642 71477752 -77305720 + (TCCA)n Simple_repeat Simple_repeat 1 110 0 297 239 145 8 chr11 71477754 71477871 -77305601 - L2 LINE L2 -3 3269 3137 224 242 149 77 chr11 71478012 71478206 -77305266 - L2 LINE L2 -157 3115 2908 1417 181 53 4 chr11 71478535 71478816 -77304656 - AluJo SINE Alu -17 295 1 965 265 42 0 chr11 71480003 71480218 -77303254 - MER58A DNA MER1_type 0 224 1 1597 197 0 0 chr11 71480608 71480903 -77302569 + AluSx SINE Alu 9 303 -9 2203 94 7 7 chr11 71481439 71481747 -77301725 + AluSq SINE Alu 1 308 -5 371 312 144 21 chr11 71481759 71482044 -77301428 + L1ME4a LINE L1 5624 5943 -178 267 289 86 8 chr11 71482046 71482174 -77301298 + L1ME4a LINE L1 5968 6105 -16 374 350 12 0 chr11 71482537 71482700 -77300772 + (CA)n Simple_repeat Simple_repeat 2 166 0 838 161 15 0 chr11 71483502 71483632 -77299840 + FLAM_A SINE Alu 2 133 0 220 274 9 35 chr11 71484718 71484831 -77298641 + C-rich Low_complexity Low_complexity 4 113 0 207 286 124 19 chr11 71485489 71485594 -77297878 - MIR SINE MIR -33 229 114 2310 78 3 3 chr11 71485695 71486002 -77297470 + AluSx SINE Alu 1 307 -5 2369 84 3 0 chr11 71486506 71486816 -77296656 + AluSx SINE Alu 1 311 -1 2426 57 0 0 chr11 71486951 71487250 -77296222 - AluY SINE Alu -12 299 1 567 219 125 6 chr11 71487250 71487410 -77296062 + MER58A DNA MER1_type 44 222 -2 254 340 85 0 chr11 71487803 71487909 -77295563 + MIR SINE MIR 18 132 -130 876 154 8 127 chr11 71487909 71488115 -77295357 + MER82 DNA MER2_type 2 174 -479 2088 142 0 0 chr11 71488115 71488426 -77295046 + AluSx SINE Alu 1 311 -1 876 154 8 127 chr11 71488426 71488472 -77295000 + MER82 DNA MER2_type 174 224 -429 2968 135 39 0 chr11 71488555 71489021 -77294451 + MER41E LTR ERV1 29 512 0 1366 216 36 76 chr11 71489021 71489470 -77294002 + MER82 DNA MER2_type 223 653 0 287 300 10 30 chr11 71489475 71489575 -77293897 + MIR SINE MIR 136 233 -29 2265 104 0 0 chr11 71489606 71489914 -77293558 - AluSx SINE Alu -2 310 3 450 205 62 20 chr11 71490506 71490654 -77292818 - L1ME3A LINE L1 -2 6162 6003 1174 169 72 4 chr11 71490663 71490899 -77292573 + L1ME1 LINE L1 5482 5733 -433 1413 185 11 28 chr11 71490946 71491258 -77292214 - AluJo SINE Alu 0 307 1 2915 208 67 48 chr11 71491259 71491710 -77291762 - MER21B LTR ERV1 -73 790 318 2207 110 0 0 chr11 71491710 71492010 -77291462 - AluSp SINE Alu -13 300 1 2915 208 67 48 chr11 71492010 71492323 -77291149 - MER21B LTR ERV1 -545 318 12 1091 177 32 111 chr11 71492335 71492441 -77291031 + L1ME1 LINE L1 5725 5838 -496 2029 115 10 0 chr11 71492441 71492737 -77290735 + AluSx SINE Alu 1 299 -13 1091 177 32 111 chr11 71492737 71493144 -77290328 + L1ME1 LINE L1 5838 6332 -2 267 307 0 30 chr11 71493201 71493302 -77290170 + L1ME3 LINE L1 6062 6159 -3 2115 98 0 47 chr11 71493307 71493477 -77289995 - AluSq SINE Alu -11 302 152 2366 56 0 23 chr11 71493477 71493783 -77289689 - AluY SINE Alu -12 299 1 2115 98 0 47 chr11 71493783 71493929 -77289543 - AluSq SINE Alu -161 152 1 615 146 30 7 chr11 71494087 71494129 -77289343 + L1M1 LINE L1 2143 2183 -3963 1885 141 0 7 chr11 71494129 71494426 -77289046 + AluSx SINE Alu 1 295 -17 615 146 30 7 chr11 71494426 71494504 -77288968 + L1M1 LINE L1 2183 2272 -3874 1677 153 9 56 chr11 71494504 71494848 -77288624 + AluSx SINE Alu 1 312 0 615 146 30 7 chr11 71494848 71494878 -77288594 + L1M1 LINE L1 2272 2300 -3846 1075 190 8 55 chr11 71494922 71495159 -77288313 + AluSq SINE Alu 71 296 -17 1080 53 0 8 chr11 71495494 71495627 -77287845 + AluY SINE Alu 1 132 -179 2110 114 0 25 chr11 71495640 71495957 -77287515 + AluSc SINE Alu 1 309 0 238 203 0 62 chr11 71495957 71496021 -77287451 + L1M1 LINE L1 2391 2450 -3696 2173 108 0 3 chr11 71496205 71496510 -77286962 - AluSg SINE Alu -6 304 1 2063 77 11 7 chr11 71498230 71498503 -77284969 - AluY SINE Alu -7 304 31 2188 93 10 10 chr11 71498690 71498991 -77284481 - AluSc SINE Alu -8 301 1 1771 176 3 6 chr11 71499019 71499332 -77284140 + AluJo SINE Alu 1 312 0 1260 292 104 26 chr11 71499509 71499739 -77283733 - L1ME2 LINE L1 -237 5927 5716 2870 86 0 0 chr11 71499739 71500098 -77283374 + THE1B LTR MaLR 3 361 -3 1260 292 104 26 chr11 71500098 71500563 -77282909 - L1ME2 LINE L1 -448 5716 5175 289 175 0 62 chr11 71500628 71500708 -77282764 + L1MC4 LINE L1 7003 7077 -965 1829 167 0 0 chr11 71500709 71501002 -77282470 + AluSq SINE Alu 1 293 -20 726 133 0 96 chr11 71501012 71501147 -77282325 + AluJ SINE Alu 14 135 -177 1581 173 35 3 chr11 71501194 71501478 -77281994 + AluJb SINE Alu 1 293 -19 994 183 0 0 chr11 71501478 71501647 -77281825 + AluJ SINE Alu 134 302 -10 243 276 0 92 chr11 71501675 71501773 -77281699 - MIR SINE MIR -70 192 104 2398 55 0 26 chr11 71502554 71502865 -77280607 - AluY SINE Alu -8 303 1 3807 219 63 32 chr11 71502868 71503027 -77280445 + L1MC4a LINE L1 6689 6842 -966 2164 97 0 7 chr11 71503027 71503326 -77280146 + AluSx SINE Alu 1 297 -15 3807 219 63 32 chr11 71503326 71504253 -77279219 + L1MC4a LINE L1 6842 7808 0 557 363 28 14 chr11 71504258 71504542 -77278930 + L1 LINE L1 4275 4562 -1584 937 159 0 6 chr11 71504548 71504711 -77278761 - AluSg/x SINE Alu -17 295 134 1995 132 0 3 chr11 71504711 71505022 -77278450 - AluY SINE Alu -1 310 1 2100 113 0 7 chr11 71505022 71505322 -77278150 - AluSg SINE Alu -12 298 1 22 0 0 0 chr11 71505370 71505392 -77278080 + AT_rich Low_complexity Low_complexity 1 22 0 260 305 43 55 chr11 71505581 71505745 -77277727 + L2 LINE L2 2575 2736 -578 * 788 244 113 68 chr11 71505736 71506072 -77277400 - L2 LINE L2 0 3313 2963 2072 115 0 0 chr11 71506140 71506426 -77277046 + AluSx SINE Alu 14 299 -13 1001 104 0 45 chr11 71506427 71506581 -77276891 + FRAM SINE Alu 1 40 0 1040 157 6 0 chr11 71506735 71506901 -77276571 - AluSc SINE Alu -24 285 119 2377 85 0 0 chr11 71506914 71507221 -77276251 + AluSq SINE Alu 1 307 -6 1982 97 15 0 chr11 71507406 71507675 -77275797 + AluSg SINE Alu 20 292 -18 2266 208 57 38 chr11 71508445 71508485 -77274987 - L1MB5 LINE L1 0 6174 6136 1716 151 22 26 chr11 71508485 71508796 -77274676 - AluJo SINE Alu -2 310 1 1966 134 0 26 chr11 71508797 71509110 -77274362 - AluSx SINE Alu -7 305 1 2266 208 57 38 chr11 71509110 71509667 -77273805 - L1MB5 LINE L1 -37 6137 5564 1094 160 0 0 chr11 71509667 71509842 -77273630 - FRAM SINE Alu -8 168 1 2295 81 3 3 chr11 71509846 71510155 -77273317 - AluY SINE Alu -2 309 1 2423 71 3 0 chr11 71510175 71510485 -77272987 - AluY SINE Alu 0 311 1 1535 158 11 7 chr11 71510639 71510677 -77272795 + MER7A DNA MER2_type 56 92 -2946 2237 95 0 7 chr11 71510677 71510981 -77272491 - AluSx SINE Alu -10 302 1 1535 158 11 7 chr11 71510981 71511220 -77272252 + MER7A DNA MER2_type 92 332 -14 415 136 210 0 chr11 71511223 71511304 -77272168 - MER2 DNA MER2_type -247 98 1 264 152 0 0 chr11 71512138 71512184 -77271288 - L2 LINE L2 -215 3057 3012 223 234 0 0 chr11 71512190 71512237 -77271235 - L2 LINE L2 -547 2767 2721 315 93 0 0 chr11 71512390 71512433 -77271039 + L1MA2 LINE L1 6260 6302 -2 225 271 0 29 chr11 71512465 71512535 -77270937 - L1MC5 LINE L1 -48 7913 7846 1996 128 10 0 chr11 71512576 71512881 -77270591 - AluSp SINE Alu -5 308 1 216 0 0 0 chr11 71512882 71512906 -77270566 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1814 158 3 0 chr11 71512906 71513191 -77270281 - AluJb SINE Alu -26 286 1 626 163 82 27 chr11 71513546 71513693 -77269779 - L1MB8 LINE L1 0 6178 6024 472 263 72 26 chr11 71513931 71514083 -77269389 - L1MD2 LINE L1 -27 6332 6174 1655 184 10 3 chr11 71514093 71514387 -77269085 - AluJo SINE Alu -14 298 3 264 336 44 9 chr11 71514553 71514666 -77268806 - MIR SINE MIR -97 165 49 24 67 0 0 chr11 71515017 71515062 -77268410 + GC_rich Low_complexity Low_complexity 1 45 0 205 119 45 60 chr11 71515062 71515129 -77268343 + (CGCGG)n Simple_repeat Simple_repeat 5 70 0 23 92 0 0 chr11 71515173 71515238 -77268234 + GC_rich Low_complexity Low_complexity 1 65 0 21 36 0 0 chr11 71515253 71515281 -77268191 + GC_rich Low_complexity Low_complexity 1 28 0 24 71 0 14 chr11 71515295 71515315 -77268157 + GC_rich Low_complexity Low_complexity 1 20 -49 266 87 22 0 chr11 71515315 71515361 -77268111 + (CTG)n Simple_repeat Simple_repeat 3 49 0 24 71 0 14 chr11 71515361 71515410 -77268062 + GC_rich Low_complexity Low_complexity 20 69 0 22 70 0 0 chr11 71515423 71515466 -77268006 + GC_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr11 71515789 71515811 -77267661 + GC_rich Low_complexity Low_complexity 1 22 0 368 285 33 33 chr11 71517985 71518136 -77265336 + MIR SINE MIR 13 163 -99 1653 225 38 31 chr11 71518508 71518846 -77264626 - L1MB5 LINE L1 0 6174 5831 2212 101 0 0 chr11 71518846 71519143 -77264329 - AluSx SINE Alu -15 297 1 1653 225 38 31 chr11 71519143 71519248 -77264224 - L1MB5 LINE L1 -343 5831 5728 231 182 59 0 chr11 71519787 71519838 -77263634 + MIR SINE MIR 112 164 -55 27 0 0 0 chr11 71520562 71520589 -77262883 + AT_rich Low_complexity Low_complexity 1 27 0 2190 70 30 13 chr11 71520614 71520916 -77262556 - AluY SINE Alu -4 307 1 1805 148 24 0 chr11 71520919 71521210 -77262262 - AluJb SINE Alu -14 298 1 276 246 56 32 chr11 71521404 71521530 -77261942 + MIR3 SINE MIR 64 192 -16 2051 101 37 3 chr11 71521641 71521938 -77261534 - AluSx SINE Alu -5 307 1 837 151 0 20 chr11 71521939 71522085 -77261387 - AluJo SINE Alu -169 143 1 35 0 0 0 chr11 71522085 71522120 -77261352 + AT_rich Low_complexity Low_complexity 1 35 0 603 136 78 0 chr11 71522133 71522236 -77261236 - AluJo SINE Alu -81 231 121 270 286 233 29 chr11 71522323 71522446 -77261026 - L1MB5 LINE L1 -385 5736 5639 1631 165 0 24 chr11 71522446 71522737 -77260735 + AluJb SINE Alu 1 284 -28 225 65 0 0 chr11 71522737 71522768 -77260704 + (CATA)n Simple_repeat Simple_repeat 2 32 0 270 286 233 29 chr11 71522768 71522853 -77260619 - L1MB5 LINE L1 -481 5640 5484 286 304 95 66 chr11 71522937 71523014 -77260458 - L1MB5 LINE L1 -766 5380 5307 2155 109 0 19 chr11 71523014 71523327 -77260145 - AluSx SINE Alu 0 312 6 286 304 95 66 chr11 71523327 71523914 -77259558 - L1MB5 LINE L1 -839 5307 4697 2016 125 3 0 chr11 71525683 71525978 -77257494 - AluSx SINE Alu -16 296 1 1732 144 3 39 chr11 71525984 71526290 -77257182 - AluJb SINE Alu -17 295 1 308 369 34 0 chr11 71528323 71528472 -77255000 + MIR SINE MIR 77 230 -32 344 271 105 15 chr11 71530103 71530236 -77253236 + MIR SINE MIR 47 191 -71 633 290 109 0 chr11 71531817 71532038 -77251434 - MIR SINE MIR 0 262 18 220 259 19 0 chr11 71532144 71532198 -77251274 - MIR SINE MIR -56 152 98 202 216 0 0 chr11 71532686 71532723 -77250749 + (TG)n Simple_repeat Simple_repeat 1 37 0 414 263 0 0 chr11 71533598 71533693 -77249779 + MER103 DNA DNA 2 96 -70 273 109 0 0 chr11 71534313 71534359 -77249113 + (TG)n Simple_repeat Simple_repeat 1 46 0 195 100 0 0 chr11 71535348 71535378 -77248094 + (TGGA)n Simple_repeat Simple_repeat 1 30 0 293 317 114 0 chr11 71536273 71536440 -77247032 + L1M4 LINE L1 4405 4590 -1556 2196 106 13 0 chr11 71536521 71536824 -77246648 + AluSx SINE Alu 1 307 -5 310 306 194 24 chr11 71536973 71537158 -77246314 + L1MC4 LINE L1 6460 6686 -1356 1872 127 33 0 chr11 71537158 71537457 -77246015 + AluSx SINE Alu 1 308 0 310 306 194 24 chr11 71537457 71537476 -77245996 + L1MC4 LINE L1 6686 6700 -1342 916 193 25 59 chr11 71537480 71537640 -77245832 + MER82 DNA MER2_type 1 154 -499 1726 174 10 3 chr11 71537640 71537938 -77245534 - AluJb SINE Alu -12 300 1 916 193 25 59 chr11 71537938 71537979 -77245493 + MER82 DNA MER2_type 154 195 -458 830 188 0 13 chr11 71537980 71538134 -77245338 + FRAM SINE Alu 1 152 -24 1712 264 42 9 chr11 71538135 71538585 -77244887 + MER82 DNA MER2_type 185 649 -4 1409 214 23 3 chr11 71538585 71538888 -77244584 + L1MC4 LINE L1 6695 7003 -1039 2131 134 0 0 chr11 71539027 71539333 -77244139 - AluSq SINE Alu -7 306 1 686 155 52 0 chr11 71539345 71539461 -77244011 - L1MB3 LINE L1 -2 6181 6060 219 69 0 0 chr11 71540579 71540608 -77242864 + (TG)n Simple_repeat Simple_repeat 2 30 0 2265 114 0 0 chr11 71541432 71541739 -77241733 - AluSx SINE Alu -5 307 1 1083 124 0 48 chr11 71541739 71541914 -77241558 - AluSg/x SINE Alu -11 301 134 2165 111 0 0 chr11 71541914 71542211 -77241261 - AluSg SINE Alu -13 297 1 964 180 22 27 chr11 71542231 71542498 -77240974 - L1MB5 LINE L1 -349 5825 5562 2290 98 3 0 chr11 71542526 71542833 -77240639 + AluSp SINE Alu 3 310 -3 353 311 30 44 chr11 71542836 71542971 -77240501 - MIR SINE MIR -109 153 21 378 259 50 43 chr11 71543047 71543186 -77240286 - MIR SINE MIR -46 216 77 25 31 0 0 chr11 71543330 71543362 -77240110 + AT_rich Low_complexity Low_complexity 1 32 0 361 339 63 17 chr11 71543641 71543815 -77239657 - L1ME LINE L1 -382 5739 5558 683 150 53 0 chr11 71544680 71544793 -77238679 - FLAM_C SINE Alu -19 124 6 285 278 35 70 chr11 71545723 71545838 -77237634 - L3 LINE CR1 -91 1486 1376 264 77 0 0 chr11 71545938 71545977 -77237495 + (TG)n Simple_repeat Simple_repeat 2 40 0 2238 122 0 0 chr11 71546887 71547198 -77236274 - AluSx SINE Alu -1 311 1 3620 180 17 39 chr11 71547198 71547428 -77236044 - L1MB3 LINE L1 -123 6060 5827 2193 119 0 3 chr11 71547428 71547740 -77235732 - AluSx SINE Alu -1 311 1 3620 180 17 39 chr11 71547740 71547855 -77235617 - L1MB3 LINE L1 -356 5827 5711 2333 91 3 0 chr11 71547855 71548164 -77235308 - AluSx SINE Alu -2 310 1 3620 180 17 39 chr11 71548164 71548789 -77234683 - L1MB3 LINE L1 -472 5711 5107 1933 146 0 10 chr11 71551243 71551538 -77231934 + AluJb SINE Alu 5 296 -16 2360 90 6 0 chr11 71551601 71551912 -77231560 - AluSq SINE Alu 0 313 1 1819 121 0 0 chr11 71552667 71552916 -77230556 - AluSx SINE Alu -63 249 1 212 253 80 0 chr11 71553064 71553139 -77230333 + MIR SINE MIR 30 110 -98 390 267 0 0 chr11 71553464 71553614 -77229858 + (TG)n Simple_repeat Simple_repeat 1 150 0 496 276 102 4 chr11 71554315 71554561 -77228911 - L2 LINE L2 -151 3162 2893 508 341 55 7 chr11 71554588 71554881 -77228591 - L2 LINE L2 -551 2763 2457 225 0 0 0 chr11 71556014 71556039 -77227433 + (GGGAGA)n Simple_repeat Simple_repeat 2 26 0 273 316 66 0 chr11 71557284 71557393 -77226079 + MIR SINE MIR 40 153 -63 2269 66 7 20 chr11 71558420 71558723 -77224749 - AluY SINE Alu -12 299 1 1706 139 51 34 chr11 71558723 71559017 -77224455 - AluJb SINE Alu -13 299 1 2160 173 72 25 chr11 71559028 71559506 -77223966 - L1MC1 LINE L1 0 6333 5826 2239 110 0 0 chr11 71559506 71559815 -77223657 - AluY SINE Alu -2 309 1 2160 173 72 25 chr11 71559815 71559862 -77223610 - L1MC1 LINE L1 -507 5826 5783 391 275 208 6 chr11 71559879 71560057 -77223415 + L1MC4a LINE L1 5690 5903 -1905 394 237 102 73 chr11 71560608 71560686 -77222786 - MER46C DNA MER2_type -154 184 110 2154 105 10 0 chr11 71560686 71560992 -77222480 - AluJb SINE Alu -3 309 1 394 237 102 73 chr11 71560992 71561090 -77222382 - MER46C DNA MER2_type -228 110 3 217 348 36 18 chr11 71561153 71561265 -77222207 + L2 LINE L2 3200 3313 0 262 301 106 0 chr11 71561386 71561499 -77221973 - L2 LINE L2 -5 3267 3143 856 223 83 8 chr11 71561637 71561879 -77221593 - MLT1F1 LTR MaLR 0 567 308 425 243 92 60 chr11 71562191 71562247 -77221225 - MIR SINE MIR -59 203 150 1803 153 0 63 chr11 71562247 71562350 -77221122 - AluJb SINE Alu 0 312 204 180 97 0 0 chr11 71562350 71562381 -77221091 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1990 118 0 7 chr11 71562381 71562668 -77220804 - AluSx SINE Alu -27 285 1 1803 153 0 63 chr11 71562668 71562896 -77220576 - AluJb SINE Alu -106 206 1 425 243 92 60 chr11 71562896 71563024 -77220448 - MIR SINE MIR -112 150 13 2527 62 0 0 chr11 71563296 71563603 -77219869 + AluY SINE Alu 1 307 -4 2487 71 0 0 chr11 71563603 71563914 -77219558 + AluY SINE Alu 1 311 0 2361 81 0 3 chr11 71563934 71564244 -77219228 + AluY SINE Alu 1 309 -2 1116 160 0 0 chr11 71564248 71564423 -77219049 + FRAM SINE Alu 1 168 -8 2198 215 53 22 chr11 71564423 71564980 -77218492 + L1MB5 LINE L1 5564 6141 -33 2016 131 0 26 chr11 71564980 71565292 -77218180 + AluSx SINE Alu 1 304 -8 2198 215 53 22 chr11 71565292 71565319 -77218153 + L1MB5 LINE L1 6141 6166 -8 2219 107 0 0 chr11 71565954 71566253 -77217219 + AluSx SINE Alu 1 299 -13 229 153 36 36 chr11 71566537 71566648 -77216824 + G-rich Low_complexity Low_complexity 2 112 0 343 293 73 0 chr11 71566856 71566938 -77216534 - L1MC4 LINE L1 -1340 6702 6615 384 22 0 0 chr11 71566938 71566983 -77216489 + (TG)n Simple_repeat Simple_repeat 2 46 0 765 188 0 16 chr11 71566983 71567111 -77216361 - AluJb SINE Alu -186 126 1 187 114 45 0 chr11 71568302 71568346 -77215126 + (CGGGG)n Simple_repeat Simple_repeat 2 47 0 477 200 0 0 chr11 71568415 71568500 -77214972 + FRAM/FAM SINE Alu 3 87 -98 213 244 0 0 chr11 71569427 71569468 -77214004 + (TTCA)n Simple_repeat Simple_repeat 2 42 0 348 304 78 9 chr11 71569468 71569583 -77213889 - L2 LINE L2 0 3313 3191 2212 113 0 3 chr11 71570374 71570675 -77212797 + AluSx SINE Alu 1 300 -12 255 172 17 29 chr11 71570962 71571041 -77212431 - L2 LINE L2 -330 2983 2908 336 200 6 26 chr11 71571092 71571182 -77212290 + MER45 DNA AcHobo 86 1579 -2 2020 130 38 0 chr11 71571437 71571729 -77211743 - AluSx SINE Alu -9 303 1 1039 80 15 7 chr11 71572139 71572276 -77211196 + AluSx SINE Alu 58 195 -117 389 267 0 0 chr11 71575387 71575477 -77207995 + MIR SINE MIR 84 173 -89 222 279 16 85 chr11 71575747 71575876 -77207596 + MER5A DNA MER1_type 26 145 -44 905 253 25 7 chr11 71577349 71577626 -77205846 - L1ME2 LINE L1 0 6164 5883 2206 105 0 10 chr11 71579000 71579314 -77204158 - AluY SINE Alu 0 311 1 741 87 106 0 chr11 71579834 71579938 -77203534 + AluSq/x SINE Alu 6 120 -192 621 315 67 65 chr11 71581392 71581561 -77201911 - L1ME4a LINE L1 0 6121 5954 2098 109 6 31 chr11 71581561 71581881 -77201591 + AluSx SINE Alu 1 312 0 621 315 67 65 chr11 71581881 71582114 -77201358 - L1ME4a LINE L1 -167 5954 5718 436 184 0 95 chr11 71582484 71582631 -77200841 - L1MC2 LINE L1 0 6344 6212 2283 75 0 3 chr11 71582655 71582948 -77200524 + AluSq SINE Alu 1 292 -21 939 274 66 0 chr11 71582979 71583282 -77200190 + MER58B DNA MER1_type 19 341 0 232 245 0 0 chr11 71583309 71583362 -77200110 - L1ME4a LINE L1 -101 6020 5968 974 274 41 32 chr11 71583703 71584144 -77199328 + MLT1C LTR MaLR 9 453 -14 255 374 7 20 chr11 71585317 71585464 -77198008 + L2 LINE L2 3168 3312 -1 288 261 78 17 chr11 71585549 71585664 -77197808 + MIR SINE MIR 64 185 -77 2222 102 0 0 chr11 71585687 71585982 -77197490 - AluSx SINE Alu -17 295 1 301 324 29 0 chr11 71586291 71586396 -77197076 - MIR3 SINE MIR -20 188 81 490 264 69 36 chr11 71588772 71588964 -77194508 + MIR SINE MIR 6 204 -58 591 248 38 0 chr11 71589612 71589769 -77193703 - MER5A DNA MER1_type -22 167 5 284 325 24 0 chr11 71589774 71589857 -77193615 + MIR3 SINE MIR 88 172 -36 2268 112 0 0 chr11 71589914 71590219 -77193253 - AluSx SINE Alu -7 305 1 444 269 168 0 chr11 71590221 71590388 -77193084 - MIR SINE MIR -35 227 33 198 237 51 0 chr11 71590660 71590719 -77192753 - MIR SINE MIR -79 129 68 401 246 42 17 chr11 71591088 71591206 -77192266 + MIR3 SINE MIR 88 208 0 270 342 79 16 chr11 71591343 71591533 -77191939 - L3 LINE CR1 -220 1357 1156 205 298 11 53 chr11 71592603 71592697 -77190775 - L2 LINE L2 0 3313 3224 485 154 13 0 chr11 71593122 71593200 -77190272 + FLAM_A SINE Alu 18 96 -46 273 260 14 0 chr11 71593200 71593283 -77190189 + L1MC4a LINE L1 7738 7808 0 1972 100 26 19 chr11 71593808 71594118 -77189354 - AluSq SINE Alu -1 312 1 1693 152 3 27 chr11 71594701 71594997 -77188475 - AluJb SINE Alu -23 289 1 2640 201 30 82 chr11 71595007 71595070 -77188402 - L1MB5 LINE L1 -8 6166 6101 2252 115 0 0 chr11 71595070 71595375 -77188097 + AluSx SINE Alu 1 305 -7 2640 201 30 82 chr11 71595375 71595693 -77187779 - L1MB5 LINE L1 -73 6101 5768 1731 170 3 13 chr11 71595693 71595999 -77187473 + AluJo SINE Alu 1 303 -9 2640 201 30 82 chr11 71595999 71596347 -77187125 - L1MB5 LINE L1 -406 5768 5481 2362 89 0 0 chr11 71596347 71596660 -77186812 + AluSq SINE Alu 1 313 0 2640 201 30 82 chr11 71596660 71596753 -77186719 - L1MB5 LINE L1 -693 5481 5385 183 305 99 43 chr11 71596762 71596903 -77186569 - MIR SINE MIR -80 182 34 202 243 43 71 chr11 71596929 71596999 -77186473 - MIR3 SINE MIR -48 160 93 2361 64 3 0 chr11 71597317 71597612 -77185860 - AluY SINE Alu -15 296 1 2336 110 0 0 chr11 71597867 71598177 -77185295 + AluSx SINE Alu 1 310 -2 254 236 0 0 chr11 71600072 71600127 -77183345 + (CCCTG)n Simple_repeat Simple_repeat 1 55 0 192 152 0 0 chr11 71600490 71600523 -77182949 + (CAT)n Simple_repeat Simple_repeat 1 33 0 525 44 0 0 chr11 71600809 71600877 -77182595 + (TG)n Simple_repeat Simple_repeat 1 68 0 591 175 36 15 chr11 71601409 71601608 -77181864 + MER58B DNA MER1_type 1 181 -160 1530 149 78 7 chr11 71601608 71601877 -77181595 - AluJb SINE Alu -24 288 1 521 172 45 119 chr11 71601896 71602030 -77181442 + AluJo SINE Alu 127 250 -62 1097 179 5 36 chr11 71602030 71602254 -77181218 + AluJo SINE Alu 85 301 -11 398 153 274 8 chr11 71602258 71602382 -77181090 + MER58B DNA MER1_type 185 341 0 2037 95 57 3 chr11 71603298 71603421 -77180051 + AluSp SINE Alu 1 116 -197 261 0 0 0 chr11 71603421 71603450 -77180022 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 2037 95 57 3 chr11 71603450 71603622 -77179850 + AluSp SINE Alu 116 312 -1 787 157 7 43 chr11 71603633 71603773 -77179699 + AluSq/x SINE Alu 1 135 -177 256 308 26 34 chr11 71604250 71604367 -77179105 - MER5B DNA MER1_type -5 173 58 366 301 42 35 chr11 71604408 71604551 -77178921 - MIR3 SINE MIR -50 158 15 1925 134 0 20 chr11 71604561 71604859 -77178613 - AluSx SINE Alu -20 292 1 2181 84 3 0 chr11 71605828 71606113 -77177359 + AluSx SINE Alu 1 286 -26 275 0 29 0 chr11 71606116 71606151 -77177321 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 227 233 0 0 chr11 71606787 71606830 -77176642 - MIR SINE MIR -3 259 217 181 296 28 28 chr11 71607160 71607231 -77176241 + L2 LINE L2 3200 3270 -2 2666 25 0 25 chr11 71607549 71607874 -77175598 + AluYb8 SINE Alu 1 317 -1 1026 142 18 6 chr11 71607874 71608043 -77175429 + AluSg/x SINE Alu 134 304 -8 1682 181 3 13 chr11 71608050 71608354 -77175118 + AluJb SINE Alu 2 302 -10 440 377 52 0 chr11 71608812 71609024 -77174448 + MIR SINE MIR 15 237 -25 2104 96 4 11 chr11 71610035 71610316 -77173156 - AluSx SINE Alu -14 298 20 2406 85 0 0 chr11 71610501 71610808 -77172664 - AluSq SINE Alu -6 307 1 1218 138 5 0 chr11 71610821 71611010 -77172462 + AluSc SINE Alu 119 308 -1 1771 114 0 0 chr11 71611162 71611399 -77172073 - AluSq SINE Alu -76 237 1 444 269 168 0 chr11 71611401 71611568 -77171904 - MIR SINE MIR -35 227 33 198 237 51 0 chr11 71611840 71611899 -77171573 - MIR SINE MIR -79 129 68 401 246 42 17 chr11 71612268 71612386 -77171086 + MIR3 SINE MIR 88 208 0 270 342 79 16 chr11 71612523 71612713 -77170759 - L3 LINE CR1 -220 1357 1156 205 298 11 53 chr11 71613783 71613877 -77169595 - L2 LINE L2 0 3313 3224 265 123 15 62 chr11 71614354 71614419 -77169053 + AluJ/FLAM SINE Alu 36 97 -205 273 260 14 0 chr11 71614419 71614502 -77168970 + L1MC4a LINE L1 7738 7808 0 1972 100 26 19 chr11 71614975 71615285 -77168187 - AluSq SINE Alu -1 312 1 1693 152 3 27 chr11 71615868 71616164 -77167308 - AluJb SINE Alu -23 289 1 2130 224 18 70 chr11 71616174 71616237 -77167235 - L1MB5 LINE L1 -8 6166 6101 2252 115 0 0 chr11 71616237 71616542 -77166930 + AluSx SINE Alu 1 305 -7 2130 224 18 70 chr11 71616542 71616860 -77166612 - L1MB5 LINE L1 -73 6101 5837 1737 170 3 13 chr11 71616860 71617166 -77166306 + AluJo SINE Alu 1 303 -9 2130 224 18 70 chr11 71617166 71617496 -77165976 - L1MB5 LINE L1 -337 5837 5491 2202 89 0 22 chr11 71617516 71617830 -77165642 + AluY SINE Alu 1 307 -4 27 0 0 0 chr11 71617856 71617883 -77165589 + AT_rich Low_complexity Low_complexity 1 27 0 237 182 59 0 chr11 71618607 71618658 -77164814 - MIR SINE MIR -55 153 112 1521 225 38 31 chr11 71619197 71619302 -77164170 + L1MB5 LINE L1 5728 5831 -343 2238 101 0 0 chr11 71619302 71619599 -77163873 + AluSx SINE Alu 1 297 -15 1521 225 38 31 chr11 71619599 71619937 -77163535 + L1MB5 LINE L1 5831 6174 0 394 285 33 33 chr11 71620309 71620460 -77163012 - MIR SINE MIR -99 163 13 2007 110 16 10 chr11 71622101 71622411 -77161061 - AluSq SINE Alu -1 312 1 2344 109 0 0 chr11 71622666 71622977 -77160495 + AluSx SINE Alu 1 311 -1 189 314 14 14 chr11 71623669 71623739 -77159733 - L2 LINE L2 -6 3266 3197 254 236 0 0 chr11 71624871 71624926 -77158546 + (CCCTG)n Simple_repeat Simple_repeat 1 55 0 198 167 0 0 chr11 71625289 71625325 -77158147 + (CAT)n Simple_repeat Simple_repeat 1 36 0 489 47 0 0 chr11 71625611 71625675 -77157797 + (TG)n Simple_repeat Simple_repeat 1 64 0 591 175 36 15 chr11 71626208 71626407 -77157065 + MER58B DNA MER1_type 1 181 -160 1530 149 78 7 chr11 71626407 71626676 -77156796 - AluJb SINE Alu -24 288 1 521 172 45 119 chr11 71626695 71626829 -77156643 + AluJo SINE Alu 127 250 -62 1097 179 5 36 chr11 71626829 71627053 -77156419 + AluJo SINE Alu 85 301 -11 398 153 274 8 chr11 71627057 71627181 -77156291 + MER58B DNA MER1_type 185 341 0 2037 95 57 3 chr11 71628097 71628220 -77155252 + AluSp SINE Alu 1 116 -197 261 0 0 0 chr11 71628220 71628249 -77155223 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 2037 95 57 3 chr11 71628249 71628421 -77155051 + AluSp SINE Alu 116 312 -1 787 157 7 43 chr11 71628432 71628572 -77154900 + AluSq/x SINE Alu 1 135 -178 256 308 26 34 chr11 71629049 71629166 -77154306 - MER5B DNA MER1_type -5 173 58 366 301 42 35 chr11 71629207 71629350 -77154122 - MIR3 SINE MIR -50 158 15 1925 134 0 20 chr11 71629360 71629658 -77153814 - AluSx SINE Alu -20 292 1 2181 84 3 0 chr11 71630627 71630912 -77152560 + AluSx SINE Alu 1 286 -26 275 0 29 0 chr11 71630915 71630950 -77152522 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 227 233 0 0 chr11 71631586 71631629 -77151843 - MIR SINE MIR -3 259 217 181 296 28 28 chr11 71631959 71632030 -77151442 + L2 LINE L2 3200 3270 -2 2101 77 0 18 chr11 71632348 71632634 -77150838 + AluY SINE Alu 1 281 -30 383 0 21 0 chr11 71632636 71632683 -77150789 + (TA)n Simple_repeat Simple_repeat 1 48 0 393 22 0 0 chr11 71632690 71632736 -77150736 + (CA)n Simple_repeat Simple_repeat 2 47 0 332 317 29 0 chr11 71633114 71633218 -77150254 - L2 LINE L2 -183 3089 2983 202 319 83 0 chr11 71633213 71633285 -77150187 - MIR SINE MIR -67 195 118 * 2027 96 41 0 chr11 71634338 71634629 -77148843 - AluSq SINE Alu -10 303 1 2159 121 3 0 chr11 71634772 71635078 -77148394 + AluSx SINE Alu 1 307 -5 313 93 0 0 chr11 71635221 71635264 -77148208 - L1MA2 LINE L1 -2 6302 6260 228 234 0 0 chr11 71635417 71635464 -77148008 + L2 LINE L2 2721 2767 -547 268 152 0 0 chr11 71635470 71635516 -77147956 + L2 LINE L2 3012 3057 -215 377 136 210 0 chr11 71636350 71636431 -77147041 + MER2 DNA MER2_type 1 98 -247 1446 158 11 7 chr11 71636434 71636673 -77146799 - MER7A DNA MER2_type -2706 332 92 2272 92 0 7 chr11 71636673 71636976 -77146496 + AluSx SINE Alu 1 301 -11 1446 158 11 7 chr11 71636976 71637014 -77146458 - MER7A DNA MER2_type -2946 92 56 1682 181 3 13 chr11 71637202 71637506 -77145966 - AluJb SINE Alu -10 302 2 1173 129 14 38 chr11 71637513 71637722 -77145750 - AluSg/x SINE Alu -8 304 101 1720 71 3 92 chr11 71637867 71638079 -77145393 - L1MA3 LINE L1 -175 6130 5957 2255 99 0 0 chr11 71638079 71638371 -77145101 + AluSg SINE Alu 1 292 -18 1720 71 3 92 chr11 71638371 71638494 -77144978 - L1MA3 LINE L1 -348 5957 5825 2049 127 0 10 chr11 71638495 71638802 -77144670 + AluY SINE Alu 1 304 -7 1759 151 22 26 chr11 71638803 71639114 -77144358 + AluJo SINE Alu 1 310 -2 279 94 19 0 chr11 71639101 71639154 -77144318 + L1MB4 LINE L1 6127 6180 0 1961 97 15 0 chr11 71639923 71640192 -77143280 - AluSg SINE Alu -18 292 20 1289 93 16 5 chr11 71640377 71640570 -77142902 - AluSp SINE Alu -6 307 113 282 43 22 0 chr11 71641442 71641488 -77141984 - L1MB4 LINE L1 0 6180 6134 1666 148 23 26 chr11 71641488 71641793 -77141679 - AluJo SINE Alu -8 304 1 2218 86 0 13 chr11 71641800 71642101 -77141371 - AluSg SINE Alu -13 297 1 628 155 0 0 chr11 71642101 71642198 -77141274 - AluSg/x SINE Alu -17 292 196 282 250 33 43 chr11 71642200 71642292 -77141180 - AluJb SINE Alu -147 155 65 1122 154 101 4 chr11 71642514 71642741 -77140731 - L1MB3 LINE L1 -145 6038 5790 2093 98 3 10 chr11 71642743 71643039 -77140433 + AluSx SINE Alu 1 294 -18 814 66 0 66 chr11 71643040 71643162 -77140310 - L1MA3 LINE L1 -367 5938 5825 2343 72 3 3 chr11 71643163 71643468 -77140004 + AluY SINE Alu 1 305 -6 22 0 0 0 chr11 71643468 71643490 -77139982 + AT_rich Low_complexity Low_complexity 1 22 0 2320 81 0 3 chr11 71643494 71643804 -77139668 + AluY SINE Alu 1 309 -2 1073 159 0 0 chr11 71643808 71643978 -77139494 + AluJb SINE Alu 130 299 -13 2251 207 56 32 chr11 71643983 71644539 -77138933 + L1MB5 LINE L1 5564 6136 -38 1871 126 0 32 chr11 71644539 71644848 -77138624 + AluSx SINE Alu 1 299 -13 2251 207 56 32 chr11 71644848 71644880 -77138592 + L1MB5 LINE L1 6136 6166 -8 1973 140 0 0 chr11 71645515 71645815 -77137657 + AluSq SINE Alu 1 300 -13 2119 101 0 22 chr11 71646988 71647305 -77136167 + AluSg SINE Alu 1 310 0 25 0 0 0 chr11 71647352 71647377 -77136095 + AT_rich Low_complexity Low_complexity 1 25 0 1074 198 69 38 chr11 71648604 71648892 -77134580 + L1MA7 LINE L1 5985 6281 -10 279 0 0 0 chr11 71648904 71648935 -77134537 + (T)n Simple_repeat Simple_repeat 1 31 0 1030 282 230 15 chr11 71649137 71649925 -77133547 - L2 LINE L2 -1289 2025 1069 530 274 135 4 chr11 71650139 71650376 -77133096 - L1MB3 LINE L1 -503 5661 5394 * 1292 142 81 28 chr11 71650368 71650735 -77132737 - L1MB8 LINE L1 -6 6160 5739 4239 172 90 14 chr11 71650742 71651532 -77131940 + MER21B LTR ERV1 11 860 -3 688 180 72 4 chr11 71651549 71651756 -77131716 - L1MB8 LINE L1 -448 5736 5360 1881 152 0 10 chr11 71651771 71652073 -77131399 - AluJo SINE Alu -13 299 1 246 205 12 36 chr11 71652073 71652156 -77131316 - L1MB3 LINE L1 -777 5397 5317 520 318 75 15 chr11 71652210 71652612 -77130860 - L1M4 LINE L1 -2411 3735 3310 4011 52 4 0 chr11 71652642 71653127 -77130345 - SVA Other Other 0 1386 900 225 0 0 0 chr11 71653227 71653252 -77130220 + (A)n Simple_repeat Simple_repeat 1 25 0 3981 232 57 14 chr11 71653266 71653894 -77129578 - L1MB3 LINE L1 -2537 3609 3010 1971 129 7 3 chr11 71653894 71654189 -77129283 + AluSx SINE Alu 1 296 -16 3981 232 57 14 chr11 71654189 71654834 -77128638 - L1MB3 LINE L1 -3136 3010 2281 414 155 0 14 chr11 71654835 71654906 -77128566 - AluJo SINE Alu -17 295 226 814 141 20 54 chr11 71654917 71655066 -77128406 - AluJo SINE Alu -155 157 14 263 156 0 0 chr11 71655073 71655118 -77128354 - L1MB3 LINE L1 -3860 2286 2242 1381 171 60 17 chr11 71655472 71655633 -77127839 - L1MCa LINE L1 -3948 2478 2325 1929 86 0 4 chr11 71655633 71655890 -77127582 - AluY SINE Alu -18 293 38 1381 171 60 17 chr11 71655890 71656101 -77127371 - L1MCa LINE L1 -4101 2325 2134 559 211 30 23 chr11 71656108 71656153 -77127319 + Tigger1 DNA MER2_type 6 49 -2369 297 0 0 0 chr11 71656153 71656186 -77127286 + (TG)n Simple_repeat Simple_repeat 2 34 0 559 211 30 23 chr11 71656186 71656273 -77127199 + Tigger1 DNA MER2_type 49 139 -2279 * 930 170 78 19 chr11 71656269 71656475 -77126997 + Tigger1 DNA MER2_type 2200 2417 -1 3150 171 103 35 chr11 71656482 71657521 -77125951 - L1MCa LINE L1 -4297 2129 918 1752 137 42 11 chr11 71657521 71657806 -77125666 + AluJb SINE Alu 1 294 -18 3150 171 103 35 chr11 71657806 71657876 -77125596 - L1MCa LINE L1 -5508 918 854 369 0 0 0 chr11 71657937 71657978 -77125494 + (TG)n Simple_repeat Simple_repeat 2 42 0 1345 170 78 26 chr11 71657978 71658248 -77125224 - AluJo SINE Alu -28 284 1 705 123 8 31 chr11 71658248 71658378 -77125094 - L1MB3 LINE L1 -41 6142 6016 1159 105 147 0 chr11 71658380 71658570 -77124902 + MER30 DNA MER1_type 13 230 0 2625 164 67 12 chr11 71658570 71658747 -77124725 - L1MB3 LINE L1 -161 6022 5856 1502 163 60 23 chr11 71658747 71659047 -77124425 - AluJo SINE Alu -1 311 1 2625 164 67 12 chr11 71659047 71659376 -77124096 - L1MB3 LINE L1 -327 5856 5488 215 300 291 5 chr11 71659491 71659714 -77123758 + L2 LINE L2 2028 2314 -1000 265 226 217 19 chr11 71659797 71659903 -77123569 + MIR SINE MIR 94 220 -42 755 185 12 37 chr11 71660028 71660190 -77123282 - FRAM SINE Alu -13 163 6 351 113 352 0 chr11 71660284 71660355 -77123117 - AluJ/FLAM SINE Alu -206 96 1 2155 102 0 6 chr11 71660419 71660732 -77122740 + AluY SINE Alu 1 311 0 683 126 0 18 chr11 71660732 71660843 -77122629 + L1MA3 LINE L1 6145 6253 -52 1252 90 0 0 chr11 71660845 71661011 -77122461 + AluSc SINE Alu 1 166 -143 207 0 0 0 chr11 71661011 71661034 -77122438 + (A)n Simple_repeat Simple_repeat 1 23 0 1671 115 0 31 chr11 71661136 71661423 -77122049 - AluSc SINE Alu -31 278 1 1890 150 35 0 chr11 71661423 71661737 -77121735 - Tigger4(Zombi) DNA MER2_type -165 2566 2242 1066 139 80 0 chr11 71661734 71661921 -77121551 - Tigger4(Zombi) DNA MER2_type -2528 203 2 * 481 293 110 70 chr11 71661921 71662207 -77121265 - L1MEc LINE L1 -4745 1651 1345 1743 154 24 0 chr11 71662207 71662499 -77120973 - AluJo SINE Alu -13 299 1 481 293 110 70 chr11 71662499 71662584 -77120888 - L1MEc LINE L1 -5051 1345 1265 390 281 41 16 chr11 71662832 71662953 -77120519 - L2 LINE L2 -9 3304 3181 308 347 33 8 chr11 71662979 71663100 -77120372 - L1MEc LINE L1 -5976 229 106 553 273 23 24 chr11 71664401 71664565 -77118907 + MIR SINE MIR 1 168 -40 1938 94 0 105 chr11 71664565 71664907 -77118565 + AluSq SINE Alu 1 306 -7 553 273 23 24 chr11 71664907 71664919 -77118553 + MIR SINE MIR 168 179 -29 216 0 0 0 chr11 71665053 71665077 -77118395 + (A)n Simple_repeat Simple_repeat 1 24 0 21 71 0 0 chr11 71665220 71665262 -77118210 + AT_rich Low_complexity Low_complexity 1 42 0 280 200 146 69 chr11 71665770 71665900 -77117572 + MIR SINE MIR 69 208 -54 3114 181 53 15 chr11 71665976 71666634 -77116838 - L1MB8 LINE L1 0 6178 5496 1516 131 0 125 chr11 71666634 71666969 -77116503 - AluJb SINE Alu -19 293 1 586 235 0 0 chr11 71666993 71667112 -77116360 - FLAM_A SINE Alu -18 124 6 1686 147 15 0 chr11 71667125 71667390 -77116082 - AluSx SINE Alu -20 292 24 296 198 29 0 chr11 71667416 71667500 -77115972 - L1MB8 LINE L1 -817 5329 5248 198 0 0 0 chr11 71667615 71667637 -77115835 + (A)n Simple_repeat Simple_repeat 1 22 0 300 292 0 23 chr11 71667665 71667795 -77115677 + L1M4 LINE L1 2193 2319 -3827 483 112 22 34 chr11 71667947 71668036 -77115436 + AluJ/FLAM SINE Alu 5 92 -220 2241 75 3 0 chr11 71668036 71668329 -77115143 + AluSc SINE Alu 1 294 -15 27 62 0 0 chr11 71668571 71668619 -77114853 + AT_rich Low_complexity Low_complexity 1 48 0 302 274 111 42 chr11 71668674 71668864 -77114608 - L1ME4a LINE L1 -119 6002 5800 262 87 61 0 chr11 71669178 71669233 -77114239 - L1MB4 LINE L1 -1 6182 6124 * 5103 153 77 26 chr11 71669202 71669426 -77114046 - L1MC3 LINE L1 -6 7779 7568 1781 129 4 0 chr11 71669426 71669682 -77113790 - AluSq SINE Alu -56 257 1 5103 153 77 26 chr11 71669682 71670475 -77112997 - L1MC3 LINE L1 -217 7568 5263 2107 101 3 0 chr11 71670501 71670787 -77112685 - AluSq SINE Alu -26 287 1 2699 229 34 25 chr11 71670834 71671597 -77111875 - L1MC3 LINE L1 -1541 4605 3836 919 168 0 24 chr11 71671603 71671770 -77111702 - AluJb SINE Alu -22 290 128 800 188 0 8 chr11 71671788 71671921 -77111551 + AluSq/x SINE Alu 2 133 -180 22 0 0 0 chr11 71672020 71672042 -77111430 + AT_rich Low_complexity Low_complexity 1 22 0 707 221 55 0 chr11 71672050 71672213 -77111259 - L1MC3 LINE L1 -2358 3788 3617 2433 60 3 0 chr11 71672224 71672523 -77110949 + AluY SINE Alu 2 301 -10 354 345 78 24 chr11 71672987 71673193 -77110279 + MIR SINE MIR 21 237 -25 2216 86 0 13 chr11 71674204 71674506 -77108966 - AluSg SINE Alu -12 298 1 576 167 10 0 chr11 71674506 71674602 -77108870 - AluSg/x SINE Alu -17 293 197 1812 84 0 20 chr11 71674711 71674960 -77108512 + AluSp SINE Alu 52 295 -18 584 220 80 7 chr11 71674960 71675110 -77108362 + MER58B DNA MER1_type 181 341 0 1667 149 17 33 chr11 71675159 71675481 -77107991 - AluJb SINE Alu 0 312 1 528 273 141 33 chr11 71675515 71675819 -77107653 - L1ME4a LINE L1 -2 6119 5783 1585 164 20 23 chr11 71675865 71676164 -77107308 + AluJb SINE Alu 1 298 -14 228 109 0 0 chr11 71676167 71676213 -77107259 - LTR66 LTR ERVL -171 439 394 31 0 0 0 chr11 71676219 71676250 -77107222 + AT_rich Low_complexity Low_complexity 1 31 0 309 251 141 65 chr11 71676250 71676513 -77106959 + L1MC5 LINE L1 7459 7741 -220 2143 97 0 7 chr11 71676665 71676965 -77106507 + AluSq SINE Alu 1 298 -15 469 216 113 44 chr11 71677439 71677660 -77105812 - MIR3 SINE MIR -32 230 2 235 250 78 0 chr11 71679031 71679095 -77104377 - MIR SINE MIR -67 141 73 334 258 82 31 chr11 71679213 71679310 -77104162 - MIR SINE MIR -113 149 48 1818 163 6 13 chr11 71679458 71679771 -77103701 + AluJb SINE Alu 1 311 -1 333 213 100 10 chr11 71679998 71680102 -77103370 - MIR SINE MIR -63 145 38 399 274 11 0 chr11 71680517 71680612 -77102860 + MIR SINE MIR 19 114 -148 202 176 0 0 chr11 71681214 71681248 -77102224 + MER91 DNA MER1_type 10 43 -153 556 272 65 18 chr11 71681386 71681603 -77101869 - MIR SINE MIR -20 242 16 2082 119 3 0 chr11 71682563 71682873 -77100599 + AluSx SINE Alu 1 311 -1 1193 137 5 0 chr11 71684241 71684431 -77099041 - AluSc SINE Alu 0 309 119 2352 85 0 0 chr11 71684444 71684751 -77098721 + AluSq SINE Alu 1 307 -6 1961 97 15 0 chr11 71684936 71685205 -77098267 + AluSg SINE Alu 20 292 -18 253 65 22 0 chr11 71685974 71686020 -77097452 - L1MB4 LINE L1 0 6180 6134 1666 148 23 26 chr11 71686020 71686325 -77097147 - AluJo SINE Alu -8 304 1 2218 86 0 13 chr11 71686332 71686633 -77096839 - AluSg SINE Alu -13 297 1 628 155 0 0 chr11 71686633 71686730 -77096742 - AluSg/x SINE Alu -17 293 197 806 155 47 0 chr11 71686732 71686880 -77096592 - AluJb SINE Alu -157 155 1 1596 187 83 51 chr11 71686880 71687213 -77096259 - L1MB3 LINE L1 -41 6142 5790 2097 101 3 10 chr11 71687213 71687511 -77095961 + AluSx SINE Alu 1 296 -16 1596 187 83 51 chr11 71687511 71687611 -77095861 - L1MB3 LINE L1 -393 5790 5695 2241 60 0 3 chr11 71687736 71688019 -77095453 + AluY SINE Alu 1 282 -29 609 104 31 37 chr11 71688478 71688641 -77094831 + (TG)n Simple_repeat Simple_repeat 1 162 0 1463 184 0 63 chr11 71688715 71689031 -77094441 - AluJo SINE Alu -8 304 9 387 274 34 23 chr11 71689535 71689710 -77093762 + C-rich Low_complexity Low_complexity 2 178 0 439 331 7 7 chr11 71691093 71691229 -77092243 + MIR SINE MIR 23 158 -104 868 256 153 17 chr11 71691363 71691723 -77091749 - MLT1C LTR MaLR -7 460 52 314 379 49 16 chr11 71692153 71692396 -77091076 - MIR SINE MIR -11 251 1 1191 216 92 76 chr11 71693157 71693213 -77090259 - MLT1E3 LTR MaLR -7 617 563 1735 147 20 14 chr11 71693213 71693505 -77089967 - AluJb SINE Alu -9 303 10 1191 216 92 76 chr11 71693505 71694032 -77089440 - MLT1E3 LTR MaLR -61 563 2 349 108 4 13 chr11 71694107 71694182 -77089290 + AluJb SINE Alu 79 131 -171 2171 119 0 0 chr11 71694189 71694483 -77088989 + AluSx SINE Alu 1 294 -18 315 0 0 0 chr11 71694735 71694770 -77088702 + (TTTTA)n Simple_repeat Simple_repeat 3 37 0 2067 109 0 7 chr11 71694771 71695081 -77088391 - AluSq SINE Alu 0 309 2 1025 268 53 40 chr11 71695106 71695561 -77087911 - MLT1C LTR MaLR 0 467 7 791 178 7 22 chr11 71695586 71695721 -77087751 + FLAM_C SINE Alu 1 133 0 1380 112 0 10 chr11 71695734 71695931 -77087541 + AluY SINE Alu 1 195 -116 403 80 0 0 chr11 71695932 71695982 -77087490 + AluY SINE Alu 63 112 -199 2085 39 0 19 chr11 71695984 71696242 -77087230 + AluY SINE Alu 59 311 0 1230 173 33 101 chr11 71696247 71696553 -77086919 + AluJo SINE Alu 1 285 -27 894 245 39 0 chr11 71697140 71697422 -77086050 - L1M4 LINE L1 -3105 3041 2749 2339 100 0 0 chr11 71697460 71697769 -77085703 - AluSg SINE Alu -1 309 1 982 185 35 27 chr11 71697772 71698032 -77085440 - L1M4 LINE L1 -3396 2750 2489 594 284 59 6 chr11 71698098 71698267 -77085205 + MIR SINE MIR 14 191 -71 2324 95 0 0 chr11 71698529 71698835 -77084637 - AluSq SINE Alu -5 308 3 354 23 0 0 chr11 71701645 71701688 -77081784 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 2292 67 0 0 chr11 71701688 71701970 -77081502 - AluSx SINE Alu -30 282 1 974 234 13 26 chr11 71702267 71702493 -77080979 + MER58A DNA MER1_type 2 224 0 1801 192 45 101 chr11 71702565 71702962 -77080510 - MSTB LTR MaLR 0 426 55 2169 133 0 0 chr11 71702962 71702974 -77080498 - AluSx SINE Alu -1 311 300 312 91 0 0 chr11 71702974 71703018 -77080454 + (CTATG)n Simple_repeat Simple_repeat 2 45 0 2169 133 0 0 chr11 71703018 71703314 -77080158 - AluSx SINE Alu -11 301 3 1801 192 45 101 chr11 71703314 71703363 -77080109 - MSTB LTR MaLR -371 55 5 180 0 0 0 chr11 71703739 71703759 -77079713 + (TCCCC)n Simple_repeat Simple_repeat 4 23 0 372 204 21 43 chr11 71706064 71706157 -77077315 - MER117 DNA MER1_type -39 158 68 200 83 0 28 chr11 71707211 71707247 -77076225 + (CGGGG)n Simple_repeat Simple_repeat 5 39 0 2299 93 3 6 chr11 71708045 71708358 -77075114 - AluSp SINE Alu -1 312 1 216 0 0 0 chr11 71708359 71708383 -77075089 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1857 158 3 0 chr11 71708383 71708668 -77074804 - AluJb SINE Alu -26 286 1 586 163 82 27 chr11 71709023 71709170 -77074302 - L1MB8 LINE L1 0 6178 6024 435 263 72 26 chr11 71709408 71709560 -77073912 - L1MD2 LINE L1 -27 6332 6174 1701 184 10 3 chr11 71709570 71709864 -77073608 - AluJo SINE Alu -14 298 3 293 353 41 8 chr11 71710021 71710143 -77073329 - MIR SINE MIR -88 174 49 364 302 19 13 chr11 71710418 71710511 -77072961 - L1MD2 LINE L1 -712 5450 5370 2045 120 43 0 chr11 71710511 71710810 -77072662 + AluSx SINE Alu 1 312 0 364 302 19 13 chr11 71710810 71710833 -77072639 - L1MD2 LINE L1 -792 5370 5349 342 0 0 0 chr11 71710835 71710873 -77072599 + (TA)n Simple_repeat Simple_repeat 2 39 0 2200 106 3 3 chr11 71710940 71711241 -77072231 - AluSp SINE Alu -12 301 1 514 283 55 71 chr11 71711379 71711515 -77071957 - LTR41 LTR ERVL -6 767 630 2120 105 7 7 chr11 71711515 71711811 -77071661 + AluSq SINE Alu 1 296 -17 514 283 55 71 chr11 71711811 71711982 -77071490 - LTR41 LTR ERVL -143 630 465 2065 94 0 17 chr11 71712368 71712656 -77070816 - AluSx SINE Alu 0 312 30 341 254 54 46 chr11 71712661 71712791 -77070681 - MIR SINE MIR -118 144 14 264 325 81 0 chr11 71713026 71713149 -77070323 + MER91B DNA MER1_type 18 150 -40 265 295 72 16 chr11 71713191 71713384 -77070088 - MLT2E LTR ERVL -7 621 418 2391 111 14 27 chr11 71715241 71715609 -77067863 - THE1B LTR MaLR 0 364 2 477 279 96 46 chr11 71715642 71715861 -77067611 - MIR SINE MIR -10 252 23 195 345 11 0 chr11 71715890 71715977 -77067495 - MIR SINE MIR -63 145 58 32 26 0 0 chr11 71716417 71716456 -77067016 + AT_rich Low_complexity Low_complexity 1 39 0 318 296 74 19 chr11 71716747 71716837 -77066635 + MER45A DNA AcHobo 3 87 -1494 2337 78 0 16 chr11 71716837 71717146 -77066326 - AluSc SINE Alu -5 304 1 318 296 74 19 chr11 71717146 71717217 -77066255 + MER45A DNA AcHobo 87 173 -5 200 316 132 9 chr11 71717403 71717517 -77065955 - L2 LINE L2 -7 3265 3138 2263 104 10 0 chr11 71717717 71718026 -77065446 + AluSx SINE Alu 1 312 0 962 126 40 4 chr11 71718046 71718163 -77065309 + L1M1 LINE L1 3482 3593 -3972 1919 141 0 7 chr11 71718163 71718460 -77065012 + AluSx SINE Alu 1 295 -17 962 126 40 4 chr11 71718460 71718538 -77064934 + L1M1 LINE L1 3593 3692 -3873 1715 166 3 47 chr11 71718538 71718881 -77064591 + AluSx SINE Alu 1 312 0 962 126 40 4 chr11 71718881 71718911 -77064561 + L1M1 LINE L1 3692 3719 -3846 1138 202 8 48 chr11 71718955 71719207 -77064265 + AluSq SINE Alu 71 312 -1 1609 165 37 25 chr11 71719207 71719502 -77063970 + L1M1 LINE L1 4572 4875 -2690 1995 97 59 7 chr11 71719502 71719791 -77063681 + AluSx SINE Alu 1 304 -8 1609 165 37 25 chr11 71719791 71719896 -77063576 + L1M1 LINE L1 4875 4977 -2588 2400 71 0 0 chr11 71719896 71720190 -77063282 - AluY SINE Alu -17 294 1 2402 84 11 86 chr11 71720191 71720314 -77063158 + L1MA3 LINE L1 5825 5956 -349 2255 99 0 0 chr11 71720314 71720606 -77062866 - AluSg SINE Alu -18 292 1 2402 84 11 86 chr11 71720606 71720824 -77062648 + L1MA3 LINE L1 5956 6189 -116 2238 74 0 56 chr11 71720824 71721147 -77062325 + AluY SINE Alu 1 305 -6 2402 84 11 86 chr11 71721147 71721265 -77062207 + L1MA3 LINE L1 6189 6251 -54 2299 78 3 0 chr11 71721265 71721561 -77061911 + AluSc SINE Alu 1 297 -12 2402 84 11 86 chr11 71721561 71721575 -77061897 + L1MA3 LINE L1 6251 6264 -41 1914 112 7 10 chr11 71721581 71721914 -77061558 + AluSx SINE Alu 1 312 0 306 0 0 0 chr11 71721916 71721950 -77061522 + (CA)n Simple_repeat Simple_repeat 2 35 0 332 317 29 0 chr11 71722328 71722432 -77061040 - L2 LINE L2 -183 3089 2983 202 319 83 0 chr11 71722427 71722499 -77060973 - MIR SINE MIR -67 195 118 * 2045 96 41 0 chr11 71723551 71723844 -77059628 - AluSq SINE Alu -8 305 1 2159 121 3 0 chr11 71723987 71724293 -77059179 + AluSx SINE Alu 1 307 -5 313 93 0 0 chr11 71724436 71724479 -77058993 - L1MA1 LINE L1 -2 6300 6258 228 234 0 0 chr11 71724632 71724679 -77058793 + L2 LINE L2 2721 2767 -547 268 152 0 0 chr11 71724685 71724731 -77058741 + L2 LINE L2 3012 3057 -215 377 136 210 0 chr11 71725565 71725646 -77057826 + MER2 DNA MER2_type 1 98 -247 1446 158 11 7 chr11 71725649 71725888 -77057584 - MER7A DNA MER2_type -2706 332 92 2248 96 0 7 chr11 71725888 71726191 -77057281 + AluSx SINE Alu 1 301 -11 1446 158 11 7 chr11 71726191 71726229 -77057243 - MER7A DNA MER2_type -2946 92 56 2225 68 13 29 chr11 71726233 71726544 -77056928 - AluY SINE Alu 0 311 6 1208 147 16 0 chr11 71726767 71726951 -77056521 + AluJb SINE Alu 104 290 -22 2109 90 10 3 chr11 71726956 71727245 -77056227 + AluSq SINE Alu 1 291 -22 456 178 0 0 chr11 71727422 71727495 -77055977 - tRNA-Ala-GCA tRNA tRNA -2 74 2 27 0 0 0 chr11 71727552 71727579 -77055893 + GC_rich Low_complexity Low_complexity 1 27 0 216 292 31 0 chr11 71728480 71728576 -77054896 + C-rich Low_complexity Low_complexity 6 104 0 588 217 79 7 chr11 71729325 71729477 -77053995 + MIR SINE MIR 70 232 -30 2064 83 69 0 chr11 71730431 71730719 -77052753 + AluSx SINE Alu 1 308 -4 192 40 0 0 chr11 71730860 71730885 -77052587 + (TG)n Simple_repeat Simple_repeat 2 26 0 793 214 22 67 chr11 71731135 71731359 -77052113 + MER20 DNA MER1_type 6 219 0 181 317 60 36 chr11 71731394 71731483 -77051989 - MER5A DNA MER1_type -16 173 88 2053 98 7 0 chr11 71731483 71731768 -77051704 - AluSg1 SINE Alu -22 287 1 181 317 60 36 chr11 71731768 71731845 -77051627 - MER5A DNA MER1_type -101 88 3 2265 88 7 0 chr11 71732223 71732518 -77050954 - AluSx SINE Alu -12 300 4 198 0 0 0 chr11 71732519 71732541 -77050931 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 244 302 174 29 chr11 71732953 71733125 -77050347 - L2 LINE L2 0 3313 3117 2170 73 26 7 chr11 71733768 71733942 -77049530 - AluY SINE Alu -2 309 125 2349 62 3 7 chr11 71733942 71734248 -77049224 - AluY SINE Alu -6 305 1 2170 73 26 7 chr11 71734248 71734376 -77049096 - AluY SINE Alu -186 125 1 2233 108 3 0 chr11 71735101 71735407 -77048065 - AluSx SINE Alu -4 308 2 1176 211 14 0 chr11 71736400 71736618 -77046854 - MER58A DNA MER1_type -3 221 1 1416 170 73 38 chr11 71736726 71737015 -77046457 - AluJo SINE Alu -13 299 1 317 323 114 12 chr11 71737032 71737199 -77046273 - L1ME3A LINE L1 -1 6169 5986 1517 249 139 22 chr11 71737366 71738333 -77045139 - L2 LINE L2 0 3313 2229 733 43 43 0 chr11 71738337 71738430 -77045042 + AluY SINE Alu 1 97 -214 192 163 0 0 chr11 71738531 71738574 -77044898 + A-rich Low_complexity Low_complexity 1 43 0 2267 98 0 25 chr11 71739571 71739888 -77043584 + AluSg SINE Alu 1 309 -1 1790 165 30 3 chr11 71740014 71740311 -77043161 - AluJo SINE Alu -7 305 1 1295 140 17 13 chr11 71740755 71740991 -77042481 - Tigger3(Golem) DNA MER2_type 0 3029 2793 416 154 0 0 chr11 71741105 71741170 -77042302 - Tigger3(Golem) DNA MER2_type -2924 105 41 363 305 94 8 chr11 71741848 71741976 -77041496 + MIR3 SINE MIR 32 170 -38 883 164 9 2 chr11 71742151 71742434 -77041038 + AluJb SINE Alu 2 332 0 340 207 110 0 chr11 71742437 71742519 -77040953 - MER5A DNA MER1_type -71 118 28 385 191 136 45 chr11 71743004 71743114 -77040358 - MER45 DNA AcHobo -58 120 1 641 191 228 39 chr11 71743545 71743808 -77039664 - MER33 DNA MER1_type -5 358 5 2221 121 3 0 chr11 71744225 71744532 -77038940 + AluSg SINE Alu 1 308 -2 210 238 143 38 chr11 71746340 71746445 -77037027 - MIR SINE MIR -33 229 114 2410 81 3 3 chr11 71746546 71746853 -77036619 + AluSx SINE Alu 1 307 -5 2209 106 3 3 chr11 71747357 71747649 -77035823 + AluSx SINE Alu 1 292 -20 1016 154 0 0 chr11 71747649 71747798 -77035674 + AluJb SINE Alu 137 285 -27 922 248 39 0 chr11 71748385 71748667 -77034805 - L1M4 LINE L1 -3105 3041 2749 2332 82 13 20 chr11 71748699 71749005 -77034467 - AluSg SINE Alu -1 309 6 1262 137 16 0 chr11 71749228 71749410 -77034062 + AluJb SINE Alu 104 288 -24 2188 90 10 3 chr11 71749417 71749706 -77033766 + AluSq SINE Alu 1 291 -22 449 178 0 0 chr11 71749883 71749956 -77033516 - tRNA-Ala-GCA tRNA tRNA -2 74 2 27 0 0 0 chr11 71750013 71750040 -77033432 + GC_rich Low_complexity Low_complexity 1 27 0 1716 155 24 17 chr11 71750514 71750811 -77032661 - AluJb SINE Alu -12 300 2 1086 220 101 55 chr11 71750811 71751331 -77032141 - MLT1E3 LTR MaLR -56 568 2 369 108 4 13 chr11 71751406 71751481 -77031991 + AluJb SINE Alu 79 131 -171 2270 119 0 0 chr11 71751488 71751782 -77031690 + AluSx SINE Alu 1 294 -18 311 0 26 0 chr11 71752034 71752073 -77031399 + (TTTTA)n Simple_repeat Simple_repeat 3 42 0 2156 109 0 7 chr11 71752074 71752384 -77031088 - AluSq SINE Alu 0 309 2 1012 257 59 46 chr11 71752409 71752864 -77030608 - MLT1C LTR MaLR 0 467 7 1440 188 7 62 chr11 71752889 71753198 -77030274 + AluJb SINE Alu 1 292 -20 1016 154 0 0 chr11 71753198 71753347 -77030125 + AluJb SINE Alu 137 285 -27 922 248 39 0 chr11 71753934 71754216 -77029256 - L1M4 LINE L1 -3105 3041 2749 2433 89 0 19 chr11 71754248 71754563 -77028909 - AluSg SINE Alu -1 309 1 1024 189 35 27 chr11 71754566 71754826 -77028646 - L1M4 LINE L1 -3396 2750 2489 582 284 59 6 chr11 71754892 71755061 -77028411 + MIR SINE MIR 14 191 -71 1360 130 10 5 chr11 71755435 71755642 -77027830 + AluSg/x SINE Alu 86 293 -19 465 84 0 0 chr11 71755642 71755713 -77027759 + L1M1 LINE L1 3605 3675 -3890 1781 153 9 56 chr11 71755722 71756066 -77027406 + AluSx SINE Alu 1 312 0 1155 181 8 59 chr11 71756138 71756375 -77027097 + AluJb SINE Alu 69 293 -19 1594 168 35 62 chr11 71756376 71756688 -77026784 + L1 LINE L1 4555 4853 -2712 2045 88 62 7 chr11 71756688 71756962 -77026510 + AluSx SINE Alu 1 289 -23 1594 168 35 62 chr11 71756962 71757083 -77026389 + L1 LINE L1 4853 4976 -2589 2179 82 17 10 chr11 71757085 71757247 -77026225 - AluY SINE Alu -18 293 127 2462 62 3 7 chr11 71757247 71757554 -77025918 - AluY SINE Alu -5 306 1 2179 82 17 10 chr11 71757554 71757682 -77025790 - AluY SINE Alu -184 127 1 2337 108 3 0 chr11 71758408 71758714 -77024758 - AluSx SINE Alu -4 308 2 1162 211 14 0 chr11 71759707 71759925 -77023547 - MER58A DNA MER1_type -3 221 1 229 190 190 0 chr11 71759937 71759995 -77023477 - AluSc SINE Alu 0 299 231 1494 170 73 35 chr11 71760033 71760321 -77023151 - AluJo SINE Alu -13 299 1 1530 234 144 27 chr11 71760671 71761638 -77021834 - L2 LINE L2 0 3313 2229 2303 72 7 14 chr11 71761642 71761935 -77021537 + AluY SINE Alu 1 291 -20 1016 154 0 0 chr11 71761935 71762084 -77021388 + AluJb SINE Alu 137 285 -27 1649 203 38 78 chr11 71762671 71762984 -77020488 - L1M4 LINE L1 -3105 3041 2760 2433 89 0 19 chr11 71762984 71763299 -77020173 - AluSg SINE Alu -1 309 1 1649 203 38 78 chr11 71763299 71763561 -77019911 - L1M4 LINE L1 -3386 2760 2489 582 284 59 6 chr11 71763627 71763796 -77019676 + MIR SINE MIR 14 191 -71 1519 134 43 36 chr11 71764168 71764205 -77019267 + MER7A DNA MER2_type 56 91 -2947 2389 92 0 7 chr11 71764205 71764508 -77018964 - AluSx SINE Alu -11 301 1 1519 134 43 36 chr11 71764508 71764747 -77018725 + MER7A DNA MER2_type 91 332 -14 406 136 210 0 chr11 71764750 71764831 -77018641 - MER2 DNA MER2_type -247 98 1 274 125 21 0 chr11 71765665 71765713 -77017759 - L2 LINE L2 -215 3057 3009 233 234 0 0 chr11 71765717 71765764 -77017708 - L2 LINE L2 -547 2767 2721 306 93 0 0 chr11 71765916 71765959 -77017513 + L1MA1 LINE L1 6258 6300 -2 1714 131 3 18 chr11 71766102 71766385 -77017087 - AluSq SINE Alu -5 308 30 342 246 54 46 chr11 71766390 71766520 -77016952 - MIR SINE MIR -118 144 14 217 325 81 0 chr11 71766755 71766878 -77016594 + MER91B DNA MER1_type 18 150 -40 233 275 83 26 chr11 71766920 71767113 -77016359 - MLT2E LTR ERVL -7 621 418 2357 111 14 27 chr11 71768969 71769337 -77014135 - THE1B LTR MaLR 0 364 2 468 270 97 46 chr11 71769393 71769589 -77013883 - MIR SINE MIR -34 228 23 207 0 0 0 chr11 71770064 71770087 -77013385 + (A)n Simple_repeat Simple_repeat 1 23 0 577 208 100 0 chr11 71770646 71770776 -77012696 - MER58C DNA MER1_type -16 199 57 21 0 0 0 chr11 71771109 71771130 -77012342 + AT_rich Low_complexity Low_complexity 1 21 0 1909 131 20 36 chr11 71772039 71772345 -77011127 + AluSx SINE Alu 1 301 -11 1244 175 113 45 chr11 71772636 71772927 -77010545 - AluJb SINE Alu -1 311 1 1726 84 0 0 chr11 71775196 71775410 -77008062 + AluSq SINE Alu 1 214 -99 307 274 79 44 chr11 71775529 71775680 -77007792 + MIR SINE MIR 2 153 -62 1417 279 214 36 chr11 71776134 71776546 -77006926 - L2 LINE L2 -176 3137 2800 8427 65 14 4 chr11 71776546 71777605 -77005867 - MER11C LTR ERVK 0 1071 2 1417 279 214 36 chr11 71777605 71778722 -77004750 - L2 LINE L2 -513 2800 1333 189 0 0 0 chr11 71778750 71778771 -77004701 + (T)n Simple_repeat Simple_repeat 1 21 0 3896 180 50 10 chr11 71778877 71779777 -77003695 - L1MB3 LINE L1 -62 6121 5186 824 156 0 15 chr11 71779786 71779921 -77003551 - FLAM_C SINE Alu -10 133 1 3311 200 41 21 chr11 71779958 71780249 -77003223 - L1MB3 LINE L1 -992 5154 4871 1964 117 46 11 chr11 71780249 71780532 -77002940 + AluSx SINE Alu 1 293 -19 3311 200 41 21 chr11 71780532 71781064 -77002408 - L1MB3 LINE L1 -1275 4871 4314 844 215 12 0 chr11 71781073 71781236 -77002236 - AluJb SINE Alu -26 286 122 1437 187 51 3 chr11 71781236 71781286 -77002186 - L1MB3 LINE L1 -1838 4308 4262 270 0 0 0 chr11 71781286 71781316 -77002156 + (TG)n Simple_repeat Simple_repeat 1 30 0 1437 187 51 3 chr11 71781316 71781597 -77001875 - L1MB3 LINE L1 -1884 4262 3961 1529 131 20 33 chr11 71781607 71781852 -77001620 - AluJb SINE Alu -12 300 59 955 130 0 20 chr11 71782311 71782457 -77001015 - FLAM_C SINE Alu 0 143 1 1670 262 129 43 chr11 71783247 71783523 -76999949 - L1ME2 LINE L1 -6 6158 5907 1973 144 0 13 chr11 71783523 71783822 -76999650 - AluSx SINE Alu -17 295 1 1670 262 129 43 chr11 71783822 71784281 -76999191 - L1ME2 LINE L1 -257 5907 5360 724 248 38 33 chr11 71784286 71784496 -76998976 + Tigger5 DNA MER2_type 6 216 -2107 528 299 122 18 chr11 71784528 71784923 -76998549 - L1ME2 LINE L1 -787 5359 4924 249 336 149 0 chr11 71785159 71785293 -76998179 - MIR SINE MIR -88 174 21 219 133 0 0 chr11 71787274 71787319 -76996153 + (CAAAAA)n Simple_repeat Simple_repeat 4 48 0 200 276 92 26 chr11 71788478 71788554 -76994918 + L2 LINE L2 3005 3085 -187 361 283 34 90 chr11 71788907 71789140 -76994332 + MIR SINE MIR 29 248 -14 414 271 154 49 chr11 71792554 71792913 -76990559 - L1M4 LINE L1 -529 5645 5246 1132 171 53 33 chr11 71793079 71793324 -76990148 + AluJo SINE Alu 46 295 -17 296 120 27 27 chr11 71793336 71793411 -76990061 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 582 227 37 37 chr11 71793495 71793658 -76989814 + MIR SINE MIR 100 262 0 263 317 88 44 chr11 71793766 71793993 -76989479 - L1ME2 LINE L1 -1328 4818 4582 574 323 144 25 chr11 71794073 71794476 -76988996 - L1ME2 LINE L1 -1711 4435 3985 1433 138 0 71 chr11 71794488 71794757 -76988715 + AluJb SINE Alu 2 251 -61 258 164 27 41 chr11 71794762 71794835 -76988637 + GA-rich Low_complexity Low_complexity 1 72 0 558 287 45 23 chr11 71794932 71795220 -76988252 - L1ME2 LINE L1 -2280 3866 3575 528 251 182 39 chr11 71795594 71795769 -76987703 - L1M4 LINE L1 -1177 4969 4820 1481 164 98 0 chr11 71795769 71796044 -76987428 - AluJb SINE Alu -10 302 1 528 251 182 39 chr11 71796044 71796302 -76987170 - L1M4 LINE L1 -1326 4820 4474 303 322 191 6 chr11 71796404 71796761 -76986711 - L1M4 LINE L1 -1809 4337 3915 379 310 130 20 chr11 71797035 71797235 -76986237 - L1M4 LINE L1 -3148 2998 2777 429 296 92 25 chr11 71798214 71798410 -76985062 + MIR SINE MIR 8 216 -46 216 277 96 24 chr11 71798837 71798920 -76984552 + MIR SINE MIR 55 143 -65 2336 69 3 0 chr11 71800957 71801260 -76982212 - AluY SINE Alu -7 304 1 682 156 92 0 chr11 71801335 71801476 -76981996 + L1MD3 LINE L1 7837 7990 -5 215 209 0 0 chr11 71801728 71801771 -76981701 + L2 LINE L2 3010 3052 -261 1622 169 61 0 chr11 71802813 71803109 -76980363 + L1MB2 LINE L1 5797 6110 -61 1358 167 10 56 chr11 71803109 71803415 -76980057 - AluSx SINE Alu -6 296 5 183 309 111 39 chr11 71803514 71803721 -76979751 + L2 LINE L2 2553 2774 -540 223 263 172 20 chr11 71803953 71804052 -76979420 + L2 LINE L2 3200 3313 0 235 191 48 32 chr11 71804138 71804201 -76979271 + MIR3 SINE MIR 124 187 -21 3363 204 76 30 chr11 71805281 71805611 -76977861 - L1ME LINE L1 -706 5394 5081 2216 93 0 0 chr11 71805611 71805902 -76977570 + AluSq SINE Alu 5 295 -18 3363 204 76 30 chr11 71805902 71806586 -76976886 - L1ME LINE L1 -1019 5081 4342 833 137 0 50 chr11 71806589 71806728 -76976744 - FLAM_C SINE Alu -1 132 1 387 83 0 0 chr11 71806736 71806796 -76976676 + (TC)n Simple_repeat Simple_repeat 2 61 0 2206 104 0 3 chr11 71807291 71807590 -76975882 + AluSg SINE Alu 1 298 -12 1918 153 0 3 chr11 71807600 71807908 -76975564 + AluSx SINE Alu 1 307 -5 2143 280 51 30 chr11 71807939 71809209 -76974263 - L1ME LINE L1 -4647 1435 271 313 286 47 47 chr11 71809312 71809483 -76973989 - L1ME LINE L1 -5580 490 320 402 276 16 8 chr11 71809625 71809748 -76973724 - LTR16A1 LTR ERVL -318 139 16 1981 148 0 0 chr11 71809885 71810188 -76973284 - AluSx SINE Alu -9 303 1 2052 102 14 0 chr11 71810574 71810869 -76972603 - AluSx SINE Alu -13 299 1 212 189 0 57 chr11 71812248 71812301 -76971171 - L2 LINE L2 -93 3220 3171 2120 90 10 13 chr11 71812383 71812684 -76970788 + AluSx SINE Alu 5 304 -8 227 31 31 0 chr11 71813575 71813607 -76969865 + (GGGA)n Simple_repeat Simple_repeat 3 35 0 564 264 42 21 chr11 71814392 71814585 -76968887 + MER20 DNA MER1_type 23 219 0 237 315 148 0 chr11 71815313 71815421 -76968051 - MLT1L LTR MaLR -182 433 310 506 199 29 37 chr11 71816432 71816500 -76966972 - MER69 DNA AcHobo -3 2523 2456 2004 136 7 3 chr11 71816500 71816809 -76966663 + AluSx SINE Alu 1 310 -2 506 199 29 37 chr11 71816809 71816876 -76966596 - MER69 DNA AcHobo -70 2456 2389 1970 144 0 0 chr11 71816980 71817272 -76966200 - AluSx SINE Alu -20 292 1 23 0 0 0 chr11 71820390 71820413 -76963059 + AT_rich Low_complexity Low_complexity 1 23 0 372 222 20 40 chr11 71822955 71823054 -76960418 - MER5A DNA MER1_type -89 100 4 1094 298 157 31 chr11 71823345 71823496 -76959976 - L2 LINE L2 0 3313 3182 1458 188 126 0 chr11 71823496 71823805 -76959667 + MER7A DNA MER2_type 1 346 0 1094 298 157 31 chr11 71823805 71824509 -76958963 - L2 LINE L2 -131 3182 2341 369 0 0 0 chr11 71824566 71824607 -76958865 + (T)n Simple_repeat Simple_repeat 1 41 0 26 0 0 0 chr11 71824628 71824654 -76958818 + GC_rich Low_complexity Low_complexity 1 26 0 2625 45 0 0 chr11 71824813 71825124 -76958348 - AluY SINE Alu 0 311 1 266 242 63 42 chr11 71825289 71825384 -76958088 + MIR SINE MIR 160 256 -6 315 239 45 34 chr11 71829827 71829915 -76953557 + L1MC4 LINE L1 6617 6705 -1337 622 197 8 61 chr11 71830035 71830167 -76953305 + FLAM_A SINE Alu 1 125 -8 1533 100 117 60 chr11 71832269 71832519 -76950953 + AluSg SINE Alu 1 270 -40 1986 93 43 0 chr11 71832519 71832797 -76950675 - AluY SINE Alu -21 290 1 1533 100 117 60 chr11 71832797 71832827 -76950645 + AluSg SINE Alu 270 297 -13 742 252 56 88 chr11 71833514 71833887 -76949585 - MER69 DNA AcHobo -794 432 72 204 40 0 0 chr11 71834652 71834677 -76948795 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 679 249 91 21 chr11 71834721 71834962 -76948510 - MLT1J LTR MaLR -24 487 230 1611 168 3 111 chr11 71835127 71835283 -76948189 + MER2 DNA MER2_type 1 172 -172 1895 107 0 37 chr11 71835283 71835581 -76947891 - AluSx SINE Alu -18 294 8 1611 168 3 111 chr11 71835581 71835810 -76947662 + MER2 DNA MER2_type 172 344 0 207 267 17 0 chr11 71835832 71835892 -76947580 + L2 LINE L2 3160 3220 -52 2447 71 0 0 chr11 71836596 71836907 -76946565 - AluY SINE Alu 0 311 1 378 184 10 19 chr11 71836952 71837055 -76946417 + CT-rich Low_complexity Low_complexity 4 105 0 1468 151 13 82 chr11 71837060 71837377 -76946095 - AluJo SINE Alu -17 295 1 18804 65 13 0 chr11 71839115 71842287 -76941185 + HERVH LTR ERV1 4488 7713 0 3575 58 5 2 chr11 71842287 71842734 -76940738 + LTR7 LTR ERV1 1 448 -2 595 274 64 32 chr11 71842779 71842998 -76940474 + HERV16 LTR ERVL 2284 2509 -2487 829 203 12 31 chr11 71843051 71843117 -76940355 - MLT1E LTR MaLR -433 160 94 1614 227 22 0 chr11 71843117 71843474 -76939998 - MLT1A1 LTR MaLR 0 365 1 829 203 12 31 chr11 71843474 71843570 -76939902 - MLT1E LTR MaLR -499 94 1 676 144 184 8 chr11 71843590 71843715 -76939757 + AluJo SINE Alu 2 148 -164 2803 61 140 0 chr11 71843715 71844108 -76939364 + LTR7 LTR ERV1 1 448 -2 9477 142 25 54 chr11 71844110 71846008 -76937464 + HERVH LTR ERV1 1 1670 -6049 5179 41 6 3 chr11 71846009 71846639 -76936833 + L1PA4 LINE L1 5300 5931 -224 2170 116 0 0 chr11 71847181 71847492 -76935980 - AluSx SINE Alu 0 312 2 9163 90 144 0 chr11 71849393 71850793 -76932679 - L1P LINE L1 -1274 4872 3272 2041 107 7 13 chr11 71850987 71851295 -76932177 - AluY SINE Alu -5 306 1 1126 263 193 18 chr11 71851713 71851780 -76931692 + MLT1G1 LTR MaLR 73 127 -468 2281 139 37 6 chr11 71851780 71852133 -76931339 - THE1B LTR MaLR 0 364 1 1126 263 193 18 chr11 71852133 71852510 -76930962 + MLT1G1 LTR MaLR 127 595 0 476 253 58 29 chr11 71853187 71853361 -76930111 - MER53 DNA DNA 0 189 11 283 271 93 0 chr11 71853675 71853815 -76929657 - L1MEc LINE L1 -3959 2437 2285 1161 158 98 0 chr11 71853823 71854038 -76929434 - AluJb SINE Alu -76 236 1 886 212 125 11 chr11 71854038 71854302 -76929170 - L1MEc LINE L1 -4098 2298 2005 * 1296 236 44 46 chr11 71854295 71854763 -76928709 + L1ME1 LINE L1 5712 6334 0 328 264 48 40 chr11 71855056 71855181 -76928291 + MLT1J LTR MaLR 277 402 -109 1728 155 0 7 chr11 71858533 71858849 -76924623 - AluSx SINE Alu 0 314 1 355 248 25 33 chr11 71859837 71859958 -76923514 - L1M4 LINE L1 -2964 3182 3063 1023 164 0 0 chr11 71860197 71860374 -76923098 - FRAM SINE Alu 0 176 1 263 200 0 20 chr11 71860410 71860460 -76923012 + MLT1D LTR MaLR 2 50 -455 595 303 45 20 chr11 71860462 71860819 -76922653 - L1M4 LINE L1 -3634 2512 2147 2031 95 11 7 chr11 71860819 71861104 -76922368 - AluSx SINE Alu -26 286 1 1144 349 68 13 chr11 71862138 71862889 -76920583 - ERVL LTR ERVL -825 4939 4148 1505 102 0 0 chr11 71863284 71863490 -76919982 + LTR43 LTR ERV1 389 594 -8 979 128 51 0 chr11 71863517 71863673 -76919799 - AluSg/x SINE Alu -28 282 119 183 42 0 0 chr11 71865764 71865788 -76917684 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1994 117 0 0 chr11 71865790 71866073 -76917399 - AluSx SINE Alu -29 283 1 1194 172 41 48 chr11 71866634 71866924 -76916548 - MER58 DNA MER1_type 0 2420 2133 9775 142 4 34 chr11 71866924 71868597 -76914875 - HERVH LTR ERV1 -4042 2634 1523 721 158 0 66 chr11 71868768 71868920 -76914552 - FLAM_C SINE Alu 0 143 2 188 260 80 0 chr11 71868925 71868975 -76914497 - MIR SINE MIR -64 144 91 1634 168 11 3 chr11 71869050 71869335 -76914137 - AluJb SINE Alu -12 300 14 946 257 169 83 chr11 71869364 71869783 -76913689 - HAL1 LINE L1 0 2507 2125 2377 61 3 0 chr11 71869783 71870078 -76913394 - AluSg SINE Alu -14 296 1 946 257 169 83 chr11 71870078 71870177 -76913295 - HAL1 LINE L1 -382 2125 2036 342 0 0 0 chr11 71870177 71870215 -76913257 + (TG)n Simple_repeat Simple_repeat 2 39 0 2094 109 0 0 chr11 71870215 71870500 -76912972 - AluSx SINE Alu -27 285 1 270 0 0 0 chr11 71870500 71870530 -76912942 + (TG)n Simple_repeat Simple_repeat 2 31 0 946 257 169 83 chr11 71870530 71870880 -76912592 - HAL1 LINE L1 -470 2037 1561 798 182 29 24 chr11 71870880 71871050 -76912422 - MLT1B LTR MaLR 0 390 220 7884 152 59 71 chr11 71871063 71872779 -76910693 + Ricksha_c DNA DNA 9 1704 -342 1235 189 25 36 chr11 71872802 71873082 -76910390 - AluJo SINE Alu -29 283 7 1551 148 3 74 chr11 71873087 71873307 -76910165 + Ricksha DNA DNA 2500 2685 -169 2250 97 0 0 chr11 71873307 71873606 -76909866 - AluSx SINE Alu -13 299 1 1551 148 3 74 chr11 71873606 71873750 -76909722 + Ricksha DNA DNA 2685 2838 -16 426 123 0 0 chr11 71874314 71874371 -76909101 + Ricksha DNA DNA 3188 3244 -2 497 196 163 45 chr11 71874373 71874560 -76908912 - MLT1B LTR MaLR -223 167 8 757 149 56 81 chr11 71874604 71874925 -76908547 - L1MB3 LINE L1 -1 6182 5781 1716 148 53 59 chr11 71874925 71875282 -76908190 + MER46B DNA MER2_type 1 230 -6 1870 168 22 46 chr11 71875288 71875658 -76907814 - L1MB3 LINE L1 -388 5783 5423 306 295 57 48 chr11 71875766 71875871 -76907601 - HAL1 LINE L1 -1185 1322 1217 452 194 62 62 chr11 71875896 71876056 -76907416 - HAL1 LINE L1 -1551 956 797 2306 249 89 12 chr11 71876076 71876378 -76907094 + L1MC4 LINE L1 6704 6981 -1061 2049 127 0 0 chr11 71876378 71876677 -76906795 + AluSx SINE Alu 1 299 -13 2306 249 89 12 chr11 71876677 71877207 -76906265 + L1MC4 LINE L1 6981 7666 -376 30 0 0 0 chr11 71877348 71877378 -76906094 + AT_rich Low_complexity Low_complexity 1 30 0 183 42 0 0 chr11 71879486 71879510 -76903962 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1994 117 0 0 chr11 71879512 71879795 -76903677 - AluSx SINE Alu -29 283 1 5138 201 128 18 chr11 71880356 71881602 -76901870 - Cheshire DNA MER1_type 0 2420 1038 249 280 165 30 chr11 71881602 71881802 -76901670 - HAL1 LINE L1 -38 2469 2243 482 268 166 24 chr11 71881855 71882187 -76901285 - HAL1 LINE L1 -495 2012 1634 227 226 65 0 chr11 71882494 71882556 -76900916 - HAL1 LINE L1 -1261 1246 1181 609 303 221 48 chr11 71882792 71883522 -76899950 - L3 LINE CR1 -42 1535 680 408 304 109 52 chr11 71883787 71884017 -76899455 + MIR SINE MIR 20 262 0 1460 161 55 31 chr11 71884977 71885269 -76898203 - AluJb SINE Alu -13 299 1 2060 112 0 0 chr11 71887953 71888239 -76895233 - AluSg SINE Alu -24 286 1 673 206 258 11 chr11 71888656 71888865 -76894607 + MER33 DNA MER1_type 5 306 -57 628 94 10 10 chr11 71888965 71889061 -76894411 - AluY SINE Alu -83 228 133 2248 64 0 49 chr11 71889062 71889389 -76894083 - AluY SINE Alu 0 311 1 1837 143 3 7 chr11 71889403 71889690 -76893782 - AluJb SINE Alu -26 286 1 801 204 63 9 chr11 71889691 71889912 -76893560 - L1M4 LINE L1 -883 5263 5031 248 236 85 38 chr11 71890317 71890423 -76893049 - L1MC5 LINE L1 -77 7884 7774 1474 252 158 20 chr11 71890534 71891168 -76892304 - L1ME3A LINE L1 -153 6017 5297 1354 206 104 45 chr11 71891168 71891604 -76891868 - MLT1F1 LTR MaLR -2 558 97 1648 158 7 25 chr11 71891625 71891910 -76891562 - AluJb SINE Alu -32 280 1 227 288 62 0 chr11 71891942 71892022 -76891450 - L1ME3A LINE L1 -873 5273 5189 227 262 119 76 chr11 71892082 71892426 -76891046 - L1MC5 LINE L1 -184 7777 7419 2243 116 0 0 chr11 71892518 71892812 -76890660 - AluSg SINE Alu -16 294 1 2067 130 3 0 chr11 71893378 71893663 -76889809 - AluSx SINE Alu -26 286 1 984 192 76 15 chr11 71893900 71894098 -76889374 - MER6B DNA MER2_type 0 210 1 1151 189 91 9 chr11 71894166 71894469 -76889003 - MER33 DNA MER1_type -15 309 1 337 282 91 63 chr11 71894665 71894952 -76888520 - L2 LINE L2 -786 2528 2234 2332 87 3 3 chr11 71894978 71895277 -76888195 - AluSg SINE Alu -11 299 1 195 238 125 25 chr11 71895312 71895392 -76888080 - L2 LINE L2 -1 3312 3225 442 257 65 43 chr11 71895501 71895777 -76887695 - L2 LINE L2 -1209 2105 1824 442 221 58 25 chr11 71895807 71895951 -76887521 + L1MC/D LINE L1 5272 5423 -698 252 242 55 106 chr11 71895952 71896188 -76887284 + L1MC/D LINE L1 5491 5770 -2038 399 234 35 17 chr11 71897115 71897234 -76886238 - MIR3 SINE MIR -8 200 79 186 385 0 11 chr11 71897379 71897470 -76886002 - MIR3 SINE MIR -34 174 85 23 54 0 0 chr11 71897497 71897534 -76885938 + AT_rich Low_complexity Low_complexity 1 37 0 498 90 26 0 chr11 71897609 71897687 -76885785 - MADE1 DNA Mariner 0 80 1 285 298 75 0 chr11 71897748 71897842 -76885630 - MER3 DNA MER1_type -76 133 33 2097 150 0 0 chr11 71898262 71898568 -76884904 - AluSx SINE Alu -6 306 1 668 257 110 18 chr11 71898933 71899151 -76884321 - MIR SINE MIR -12 250 13 708 197 51 0 chr11 71900044 71900181 -76883291 - FRAM SINE Alu -10 166 23 1143 181 0 11 chr11 71901541 71901729 -76881743 + MER5A DNA MER1_type 4 189 0 297 323 49 30 chr11 71902571 71902735 -76880737 - MLT1L LTR MaLR -1 614 448 2335 85 0 3 chr11 71904846 71905139 -76878333 - AluSx SINE Alu -20 292 1 280 261 0 0 chr11 71906021 71906086 -76877386 + MER5A DNA MER1_type 42 106 -83 2257 96 3 3 chr11 71907433 71907735 -76875737 - AluSg1 SINE Alu -7 302 1 297 254 14 0 chr11 71908069 71908140 -76875332 + MER116 DNA Mariner 9 80 0 2440 82 3 0 chr11 71909237 71909542 -76873930 - AluSp SINE Alu -7 306 1 958 134 204 30 chr11 71909616 71909817 -76873655 - MER46A DNA MER2_type 0 236 1 21 0 0 0 chr11 71910029 71910050 -76873422 + AT_rich Low_complexity Low_complexity 1 21 0 439 151 14 0 chr11 71911250 71911323 -76872149 - MER116 DNA Mariner 0 80 7 237 208 38 0 chr11 71911326 71911379 -76872093 - MER33 DNA MER1_type 0 363 309 * 529 210 35 16 chr11 71911375 71911499 -76871973 - MER33 DNA MER1_type -197 166 1 189 74 0 0 chr11 71912485 71912512 -76870960 + (A)n Simple_repeat Simple_repeat 1 27 0 2314 104 0 3 chr11 71913457 71913766 -76869706 - AluSg SINE Alu -1 309 2 252 216 34 57 chr11 71914877 71914965 -76868507 - MLT1J1 LTR MaLR -5 441 356 1684 280 61 20 chr11 71915820 71916509 -76866963 + L1ME LINE L1 2975 3691 -2455 983 162 22 38 chr11 71916515 71916668 -76866804 + MER2 DNA MER2_type 4 155 -190 2317 55 45 10 chr11 71916668 71916960 -76866512 - AluY SINE Alu -9 302 1 983 162 22 38 chr11 71916960 71916991 -76866481 + MER2 DNA MER2_type 155 185 -160 655 168 30 38 chr11 71917037 71917168 -76866304 - FLAM_A SINE Alu -3 130 1 384 270 0 0 chr11 71917168 71917242 -76866230 + MER2 DNA MER2_type 272 345 0 485 272 107 21 chr11 71917268 71917511 -76865961 + L1ME LINE L1 3723 3986 -2160 858 221 50 15 chr11 71917539 71917738 -76865734 - AluJo SINE Alu -13 299 94 3258 247 71 19 chr11 71917740 71918793 -76864679 + L1ME LINE L1 4170 5277 -869 597 143 60 14 chr11 71918799 71918968 -76864504 + AluJo SINE Alu 1 211 -101 877 252 195 33 chr11 71918975 71919364 -76864108 - MLT1D LTR MaLR -52 453 2 623 239 67 9 chr11 71919365 71919547 -76863925 + L1ME LINE L1 5465 5649 -517 261 83 0 0 chr11 71922011 71922047 -76861425 + (CTG)n Simple_repeat Simple_repeat 2 37 0 265 44 0 44 chr11 71922076 71922121 -76861351 + (TCC)n Simple_repeat Simple_repeat 3 45 0 2025 161 6 3 chr11 71922123 71922434 -76861038 - AluJb SINE Alu 0 312 1 199 319 53 44 chr11 71924423 71924536 -76858936 + L2 LINE L2 3158 3271 -1 2287 66 31 0 chr11 71924546 71924833 -76858639 - AluY SINE Alu -15 296 1 1717 173 40 3 chr11 71925054 71925378 -76858094 - MER44D DNA MER2_type -3 606 1 588 229 105 0 chr11 71927555 71927708 -76855764 - L1ME1 LINE L1 -5 6161 5993 1641 179 33 0 chr11 71928341 71928614 -76854858 + AluJo SINE Alu 1 282 -30 1644 100 0 5 chr11 71928818 71929028 -76854444 - AluSc SINE Alu -100 209 1 320 239 177 0 chr11 71929029 71929142 -76854330 - MER69 DNA AcHobo -2389 137 5 877 228 56 0 chr11 71930228 71930408 -76853064 + MER58A DNA MER1_type 2 191 -33 2276 86 40 3 chr11 71930408 71930709 -76852763 + AluSx SINE Alu 1 312 0 996 120 0 0 chr11 71930877 71931010 -76852462 - AluSq/x SINE Alu -179 133 1 826 174 19 7 chr11 71931021 71931176 -76852296 - AluJb SINE Alu -12 300 144 3406 70 7 2 chr11 71931178 71931624 -76851848 - LTR7 LTR ERV1 -2 448 1 2610 84 40 8 chr11 71931624 71932004 -76851468 - HERVH LTR ERV1 0 7713 7322 1413 129 18 5 chr11 71932002 71932219 -76851253 - HERVH LTR ERV1 -1894 5819 5600 * 4436 137 9 1 chr11 71932220 71932877 -76850595 - HERVH LTR ERV1 -2564 5149 4488 2687 96 5 5 chr11 71932879 71933264 -76850208 - HERVH LTR ERV1 -3720 3993 3609 19746 94 30 14 chr11 71933364 71936257 -76847215 + HERVH LTR ERV1 58 2995 -4718 736 139 39 0 chr11 71936236 71936365 -76847107 + HERVH LTR ERV1 3140 3273 -4440 * 1607 112 103 4 chr11 71936466 71936699 -76846773 - AluSq SINE Alu -57 256 1 234 319 92 8 chr11 71936735 71936854 -76846618 - L1ME1 LINE L1 -2233 5575 5447 912 163 0 13 chr11 71936867 71937020 -76846452 - MLT1C LTR MaLR -12 455 305 1507 158 56 56 chr11 71937021 71937184 -76846288 - L1MB7 LINE L1 -245 5939 5777 2121 110 43 3 chr11 71937184 71937485 -76845987 - AluSp SINE Alu 0 313 1 1507 158 56 56 chr11 71937485 71937662 -76845810 - L1MB7 LINE L1 -406 5778 5599 733 175 19 13 chr11 71937668 71937822 -76845650 - MER96B DNA MER1_type? -248 169 15 389 241 17 69 chr11 71937961 71938077 -76845395 + MER81 DNA DNA 1 110 -4 2174 105 13 22 chr11 71938129 71938444 -76845028 + AluSx SINE Alu 1 312 0 1055 233 41 0 chr11 71938753 71939023 -76844449 + MER33 DNA MER1_type 44 324 0 705 302 112 26 chr11 71939453 71939917 -76843555 - MER69 DNA AcHobo -424 802 299 628 271 14 34 chr11 71939956 71940163 -76843309 + MLT1E2 LTR MaLR 373 575 -51 609 196 145 104 chr11 71940185 71940522 -76842950 + MLT1C LTR MaLR 46 396 -71 6751 91 6 11 chr11 71940624 71942028 -76841444 - HERVH LTR ERV1 -2053 4601 3053 1654 200 89 91 chr11 71942128 71942369 -76841103 + L1MD1 LINE L1 4421 4661 -1485 2357 88 3 0 chr11 71942369 71942664 -76840808 - AluY SINE Alu -15 296 1 1654 200 89 91 chr11 71942664 71942983 -76840489 + L1MD1 LINE L1 4661 4982 -1164 693 160 0 120 chr11 71942983 71943133 -76840339 - FLAM_A SINE Alu -1 132 1 1654 200 89 91 chr11 71943133 71943277 -76840195 + L1MD1 LINE L1 4982 5125 -1021 1366 140 0 0 chr11 71943301 71943501 -76839971 + AluSg/x SINE Alu 113 312 0 2708 172 16 97 chr11 71943502 71943854 -76839618 + L1MD1 LINE L1 5272 5651 -591 1557 127 31 0 chr11 71943854 71944114 -76839358 + L1MA1 LINE L1 6031 6298 -4 2708 172 16 97 chr11 71944114 71944399 -76839073 + L1MD1 LINE L1 5651 5957 -285 370 228 297 0 chr11 71944399 71944500 -76838972 - FLAM_C SINE Alu -2 131 1 2708 172 16 97 chr11 71944500 71944586 -76838886 + L1MD1 LINE L1 5957 6048 -194 1807 162 0 36 chr11 71944586 71944889 -76838583 + AluJo SINE Alu 1 292 -20 2708 172 16 97 chr11 71944889 71945187 -76838285 + L1MD1 LINE L1 6048 6189 -53 306 73 0 0 chr11 71945187 71945228 -76838244 + (TTCC)n Simple_repeat Simple_repeat 1 41 0 2354 93 10 13 chr11 71945228 71945540 -76837932 - AluY SINE Alu 0 311 1 273 103 0 172 chr11 71945540 71945570 -76837902 + L1MD2 LINE L1 6288 6321 -38 2264 81 0 0 chr11 71945570 71945892 -76837580 + AluY SINE Alu 1 322 0 273 103 0 172 chr11 71945892 71945947 -76837525 + L1MD2 LINE L1 6321 6359 0 6378 201 41 27 chr11 71945966 71947040 -76836432 + L1MC1 LINE L1 3522 4579 -1754 1944 155 0 10 chr11 71947040 71947361 -76836111 + AluJo SINE Alu 1 318 0 6378 201 41 27 chr11 71947361 71947751 -76835721 + L1MC1 LINE L1 4579 4962 -1371 2112 108 0 17 chr11 71947751 71948064 -76835408 + AluSx SINE Alu 1 308 0 6378 201 41 27 chr11 71948064 71949362 -76834110 + L1MC1 LINE L1 4962 6333 0 1463 169 64 26 chr11 71949382 71949648 -76833824 + AluJo SINE Alu 7 282 -30 2627 59 0 0 chr11 71950876 71951179 -76832293 + AluSx SINE Alu 1 303 -9 244 290 159 0 chr11 71953463 71953570 -76829902 + L2 LINE L2 2635 2758 -556 2163 143 0 0 chr11 71954309 71954617 -76828855 + AluSx SINE Alu 1 308 -4 365 205 0 33 chr11 71955262 71955384 -76828088 + CT-rich Low_complexity Low_complexity 3 120 0 1812 165 0 0 chr11 71955386 71955659 -76827813 - AluSx SINE Alu -39 273 1 200 235 39 0 chr11 71956361 71956412 -76827060 + G-rich Low_complexity Low_complexity 3 55 0 245 289 66 0 chr11 71957375 71957451 -76826021 - L2 LINE L2 -78 3194 3114 2245 108 27 0 chr11 71957717 71958012 -76825460 + AluSx SINE Alu 8 310 -2 2156 69 0 11 chr11 71958416 71958696 -76824776 - AluY SINE Alu 0 300 24 289 301 42 30 chr11 71958720 71958886 -76824586 - MER5A DNA MER1_type -3 186 19 220 291 116 50 chr11 71959125 71959324 -76824148 + L2 LINE L2 2950 3161 -111 307 135 0 23 chr11 71960151 71960236 -76823236 + AluJb SINE Alu 2 124 -178 28 0 0 0 chr11 71960240 71960268 -76823204 + AT_rich Low_complexity Low_complexity 1 28 0 5655 91 34 50 chr11 71960425 71961311 -76822161 + MER4D LTR ERV1 1 872 0 5841 190 75 24 chr11 71961393 71962733 -76820739 + L1MDa LINE L1 3 1411 -5129 857 189 0 0 chr11 71962734 71962887 -76820585 - AluSg/x SINE Alu -2 308 156 352 127 32 0 chr11 71962887 71962950 -76820522 + Alu SINE Alu 233 297 -3 23 0 0 0 chr11 71962956 71962979 -76820493 + AT_rich Low_complexity Low_complexity 1 23 0 227 250 0 0 chr11 71963200 71963248 -76820224 + MER58A DNA MER1_type 177 224 0 906 189 39 114 chr11 71964433 71964462 -76819010 + MLT1A2 LTR MaLR 1 31 -343 1897 160 7 13 chr11 71964462 71964762 -76818710 - AluJb SINE Alu -11 301 4 906 189 39 114 chr11 71964762 71965119 -76818353 + MLT1A2 LTR MaLR 31 358 -16 928 199 70 0 chr11 71965480 71965681 -76817791 - MER20 DNA MER1_type -4 215 1 3122 165 56 62 chr11 71967119 71967848 -76815624 - LTR8A LTR ERV1 0 727 3 218 264 0 14 chr11 71968205 71968277 -76815195 + (CA)n Simple_repeat Simple_repeat 1 71 0 2166 112 0 3 chr11 71968456 71968742 -76814730 + AluSx SINE Alu 11 295 -17 182 263 101 61 chr11 71969146 71969245 -76814227 - MIR SINE MIR -70 138 36 531 258 178 24 chr11 71969245 71969621 -76813851 - LTR16A1 LTR ERVL 0 457 24 2137 95 7 36 chr11 71970452 71970757 -76812715 - AluSx SINE Alu -16 296 1 770 207 38 33 chr11 71970760 71970973 -76812499 - L1MB3 LINE L1 -278 5905 5692 240 203 76 13 chr11 71971141 71971220 -76812252 + L1ME LINE L1 5590 5673 -448 280 326 6 17 chr11 71971444 71971616 -76811856 + GA-rich Low_complexity Low_complexity 3 172 0 * 451 263 29 0 chr11 71971532 71971703 -76811769 + G-rich Low_complexity Low_complexity 2 177 0 271 251 0 68 chr11 71971817 71972062 -76811410 + GA-rich Low_complexity Low_complexity 1 228 0 25 31 0 0 chr11 71972900 71972932 -76810540 + AT_rich Low_complexity Low_complexity 1 32 0 1548 150 77 47 chr11 71973110 71973410 -76810062 + AluJo SINE Alu 1 309 -3 2226 135 3 0 chr11 71973473 71973784 -76809688 + AluSx SINE Alu 1 312 0 1554 167 7 23 chr11 71973928 71974227 -76809245 + Tigger1 DNA MER2_type 2 295 -2123 269 245 0 0 chr11 71974228 71974281 -76809191 + Tigger1 DNA MER2_type 243 295 -2123 283 146 16 4 chr11 71974381 71974452 -76809020 + L1MB4 LINE L1 6112 6182 -1 1033 284 88 72 chr11 71974637 71976407 -76807065 + L1M4 LINE L1 2210 4006 -2140 662 339 49 13 chr11 71976408 71976795 -76806677 + MLT1J LTR MaLR 2 402 -109 312 301 75 50 chr11 71976846 71977125 -76806347 + L1M4 LINE L1 4000 4285 -1861 377 264 28 7 chr11 71977225 71977369 -76806103 + L1M4 LINE L1 4901 5047 -1099 889 167 0 0 chr11 71977637 71977775 -76805697 - FLAM_C SINE Alu -5 138 1 309 274 159 10 chr11 71977833 71978034 -76805438 + L1MEd LINE L1 54 284 -5835 191 262 0 0 chr11 71978084 71978126 -76805346 - MIR SINE MIR -31 231 190 271 264 25 50 chr11 71978326 71978447 -76805025 + L1MEd LINE L1 550 667 -5452 1547 152 47 0 chr11 72028447 72028703 -76754769 - AluSx SINE Alu -44 268 1 2061 100 14 0 chr11 72029780 72030069 -76753403 + AluSx SINE Alu 1 293 -19 2129 77 13 13 chr11 72030069 72030368 -76753104 + AluY SINE Alu 1 299 -12 1597 152 4 0 chr11 72030703 72030953 -76752519 + AluJb SINE Alu 36 286 -26 769 163 0 0 chr11 72031226 72031349 -76752123 - FLAM_C SINE Alu -1 142 20 1776 177 0 3 chr11 72033678 72033978 -76749494 + AluJb SINE Alu 1 299 -13 2110 127 3 0 chr11 72035317 72035616 -76747856 - AluSx SINE Alu -12 300 1 180 158 0 0 chr11 72035801 72035839 -76747633 + T-rich Low_complexity Low_complexity 1 38 0 2313 86 7 0 chr11 72035921 72036223 -76747249 + AluSq SINE Alu 1 304 -9 1760 131 58 7 chr11 72038093 72038389 -76745083 + AluJb SINE Alu 3 312 0 2204 114 3 0 chr11 72038701 72039007 -76744465 - AluSx SINE Alu -5 307 1 713 179 16 0 chr11 72039058 72039181 -76744291 + FLAM_C SINE Alu 2 126 -17 23 0 0 29 chr11 72039181 72039201 -76744271 + AT_rich Low_complexity Low_complexity 1 21 -12 2204 88 3 7 chr11 72039201 72039498 -76743974 + AluSx SINE Alu 1 296 -16 23 0 0 29 chr11 72039498 72039511 -76743961 + AT_rich Low_complexity Low_complexity 21 33 0 1748 151 0 42 chr11 72039835 72040147 -76743325 + AluJb SINE Alu 1 299 -13 698 215 8 116 chr11 72040730 72040821 -76742651 - MER63 DNA MER1_type -18 1043 944 2098 102 3 31 chr11 72040821 72041114 -76742358 + AluSx SINE Alu 2 286 -26 198 33 33 0 chr11 72041114 72041144 -76742328 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 698 215 8 116 chr11 72041144 72041161 -76742311 - MER63 DNA MER1_type -117 944 927 579 231 74 0 chr11 72041161 72041282 -76742190 + FLAM_A SINE Alu 1 130 -3 698 215 8 116 chr11 72041282 72041413 -76742059 - MER63 DNA MER1_type -134 927 828 1089 103 0 26 chr11 72041845 72042000 -76741472 - AluSq/x SINE Alu -161 151 1 216 339 40 44 chr11 72042099 72042310 -76741162 + MIR SINE MIR 16 229 -33 1062 142 101 23 chr11 72042960 72043178 -76740294 - AluJb SINE Alu -23 289 55 235 318 221 17 chr11 72043619 72044022 -76739450 - L2 LINE L2 -1879 1435 951 230 203 158 75 chr11 72045663 72045796 -76737676 - L2 LINE L2 -3 3310 3167 1972 116 11 0 chr11 72045880 72046148 -76737324 - AluSx SINE Alu -16 296 26 325 197 0 0 chr11 72046254 72046320 -76737152 + Charlie4 DNA MER1_type 1890 1955 -6 2256 114 0 7 chr11 72046481 72046789 -76736683 - AluSx SINE Alu -5 307 2 259 200 0 0 chr11 72046789 72046844 -76736628 + Alu SINE Alu 246 300 0 781 254 95 52 chr11 72046922 72047249 -76736223 - MER58B DNA MER1_type 0 341 1 1869 140 32 4 chr11 72047316 72047595 -76735877 + AluJb SINE Alu 1 287 -25 1668 161 177 11 chr11 72047694 72048066 -76735406 + MER4C LTR ERV1 32 465 0 2677 52 0 0 chr11 72048069 72048377 -76735095 - AluY SINE Alu -3 308 1 2169 123 10 10 chr11 72048398 72048708 -76734764 - AluSq SINE Alu -3 310 1 1730 137 7 51 chr11 72049251 72049543 -76733929 - AluJb SINE Alu -22 290 12 2243 104 0 36 chr11 72049769 72050077 -76733395 + AluSx SINE Alu 1 297 -15 412 339 71 28 chr11 72050447 72050842 -76732630 - L1M4 LINE L1 -2052 4094 3683 299 274 29 10 chr11 72050853 72050955 -76732517 + MIR SINE MIR 8 111 -151 22 56 0 0 chr11 72051344 72051380 -76732092 + AT_rich Low_complexity Low_complexity 1 36 0 342 250 144 31 chr11 72051771 72051931 -76731541 + MIR SINE MIR 21 198 -64 2328 99 0 3 chr11 72052074 72052367 -76731105 + AluSq SINE Alu 1 292 -21 227 205 26 39 chr11 72052656 72052734 -76730738 - L1ME LINE L1 -277 5844 5768 894 157 140 0 chr11 72052750 72052928 -76730544 + MER4C LTR ERV1 32 234 -231 3496 142 51 9 chr11 72053626 72054269 -76729203 + MER50 LTR ERV1 1 670 -64 449 132 0 0 chr11 72054381 72054449 -76729023 - AluSc SINE Alu -142 167 100 1279 112 0 0 chr11 72054449 72054618 -76728854 + AluSg/x SINE Alu 141 309 -1 222 153 8 252 chr11 72055497 72055628 -76727844 - L2 LINE L2 -4 3309 3211 2143 167 69 32 chr11 72055628 72055927 -76727545 + L1MB7 LINE L1 5587 5910 -274 1853 165 3 22 chr11 72055927 72056242 -76727230 + AluJo SINE Alu 4 312 0 2143 167 69 32 chr11 72056242 72056404 -76727068 + L1MB7 LINE L1 5910 6065 -119 1321 131 0 0 chr11 72056404 72056587 -76726885 + AluSx SINE Alu 1 183 -129 575 97 8 81 chr11 72056588 72056712 -76726760 + L1MB7 LINE L1 6069 6183 -1 260 211 18 0 chr11 72056716 72056773 -76726699 - L2 LINE L2 -92 3221 3164 2110 160 0 0 chr11 72056955 72057267 -76726205 + AluJo SINE Alu 1 312 0 219 257 35 62 chr11 72058038 72058182 -76725290 - L2 LINE L2 -245 3068 2929 1494 119 163 12 chr11 72058262 72058513 -76724959 + AluSg1 SINE Alu 1 289 -20 2497 45 3 0 chr11 72058670 72058957 -76724515 - AluY SINE Alu -23 288 1 198 0 0 0 chr11 72059365 72059387 -76724085 + (A)n Simple_repeat Simple_repeat 1 22 0 2170 146 0 0 chr11 72059387 72059689 -76723783 + AluJb SINE Alu 1 302 -10 2486 81 0 3 chr11 72060150 72060457 -76723015 - AluSx SINE Alu -6 306 1 2408 106 0 0 chr11 72061211 72061514 -76721958 + AluSx SINE Alu 1 303 -9 411 275 258 0 chr11 72062224 72062391 -76721081 - MIR SINE MIR -20 242 33 614 253 79 0 chr11 72063490 72063692 -76719780 + MER20 DNA MER1_type 1 218 -1 1910 161 24 0 chr11 72063744 72064036 -76719436 - AluJb SINE Alu -13 299 1 1848 113 106 0 chr11 72064153 72064418 -76719054 + AluSx SINE Alu 1 293 -19 200 361 14 0 chr11 72065063 72065135 -76718337 + MIR SINE MIR 31 103 -159 2202 121 14 0 chr11 72065156 72065453 -76718019 + AluSx SINE Alu 1 301 -11 212 250 160 20 chr11 72065498 72065598 -76717874 + MIR SINE MIR 95 208 -54 1987 160 7 0 chr11 72065958 72066258 -76717214 + AluJb SINE Alu 3 304 -8 2416 73 7 0 chr11 72066415 72066704 -76716768 - AluSq SINE Alu -22 291 1 302 337 59 0 chr11 72066806 72066993 -76716479 + L1ME2 LINE L1 4055 4252 -1894 2215 105 14 0 chr11 72067030 72067326 -76716146 + AluY SINE Alu 1 300 -11 1836 140 92 22 chr11 72067386 72067535 -76715937 + MLT1B LTR MaLR 8 145 -245 2283 109 3 7 chr11 72067535 72067838 -76715634 + AluSx SINE Alu 1 302 -10 1836 140 92 22 chr11 72067838 72068045 -76715427 + MLT1B LTR MaLR 145 389 -1 2253 131 0 0 chr11 72068192 72068528 -76714944 + AluSx SINE Alu 1 336 0 264 307 59 13 chr11 72068534 72068908 -76714564 + L1ME2 LINE L1 5258 5395 -769 2184 112 7 16 chr11 72069269 72069572 -76713900 - AluSx SINE Alu -10 302 3 317 344 119 7 chr11 72069572 72069723 -76713749 - L1M4 LINE L1 -742 5432 5265 1439 177 91 64 chr11 72069848 72069941 -76713531 + MLT1C LTR MaLR 1 90 -377 2112 133 3 17 chr11 72069941 72070243 -76713229 - AluJb SINE Alu -14 298 1 1439 177 91 64 chr11 72070243 72070600 -76712872 + MLT1C LTR MaLR 90 463 -4 2235 123 0 25 chr11 72070679 72070996 -76712476 - AluSx SINE Alu -3 309 1 2176 107 20 20 chr11 72071409 72071709 -76711763 - AluSq SINE Alu -13 300 1 2463 76 3 0 chr11 72071929 72072230 -76711242 + AluY SINE Alu 1 302 -9 244 268 0 0 chr11 72072441 72072497 -76710975 - MER94 DNA DNA -77 57 2 1840 148 4 0 chr11 72072650 72072913 -76710559 + AluJb SINE Alu 12 275 -37 180 0 0 0 chr11 72072921 72072941 -76710531 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2561 71 0 3 chr11 72073332 72073641 -76709831 + AluY SINE Alu 1 308 -3 577 219 37 119 chr11 72074000 72074273 -76709199 + L1ME2 LINE L1 5855 6265 -69 2187 137 0 0 chr11 72074273 72074579 -76708893 - AluSq SINE Alu -7 306 1 577 219 37 119 chr11 72074579 72074642 -76708830 + L1ME2 LINE L1 6265 6332 -2 281 258 20 46 chr11 72075430 72075511 -76707961 + A-rich Low_complexity Low_complexity 1 78 -69 2186 109 7 0 chr11 72075511 72075804 -76707668 + AluSx SINE Alu 15 309 -3 281 258 20 46 chr11 72075804 72075873 -76707599 + A-rich Low_complexity Low_complexity 78 147 0 2258 89 4 0 chr11 72076143 72076444 -76707028 + AluSq SINE Alu 1 302 0 451 178 0 22 chr11 72077069 72077159 -76706313 + FLAM SINE Alu 44 131 -12 27 0 0 0 chr11 72077159 72077186 -76706286 + AT_rich Low_complexity Low_complexity 1 27 0 1980 169 0 7 chr11 72077257 72077564 -76705908 + AluJo SINE Alu 1 305 -7 2309 105 3 6 chr11 72077564 72077877 -76705595 + AluSx SINE Alu 1 312 0 1035 104 0 8 chr11 72078747 72078881 -76704591 + FLAM_C SINE Alu 1 133 -10 2090 143 0 23 chr11 72079335 72079642 -76703830 + AluJb SINE Alu 1 300 -12 21 36 0 0 chr11 72079803 72079831 -76703641 + AT_rich Low_complexity Low_complexity 1 28 0 1592 153 0 87 chr11 72080227 72080515 -76702957 + AluJo SINE Alu 1 263 -49 1859 161 21 0 chr11 72080701 72080986 -76702486 + AluJo SINE Alu 1 291 -21 2205 145 0 0 chr11 72081216 72081512 -76701960 + AluSx SINE Alu 1 296 -16 1672 195 76 22 chr11 72081628 72082164 -76701308 + L1MB5 LINE L1 5505 6168 -6 1615 176 0 18 chr11 72082223 72082316 -76701156 + AluJb SINE Alu 44 137 -175 2296 84 10 20 chr11 72082316 72082613 -76700859 + AluY SINE Alu 1 294 -17 1615 176 0 18 chr11 72082613 72082792 -76700680 + AluJb SINE Alu 137 311 -1 1389 174 19 1 chr11 72082981 72083270 -76700202 + L1MB4 LINE L1 5749 6040 -128 2316 88 0 0 chr11 72083295 72083627 -76699845 + AluSx SINE Alu 1 332 0 605 101 0 11 chr11 72083995 72084084 -76699388 + 5S rRNA rRNA 3 90 -31 1325 164 36 9 chr11 72084266 72084486 -76698986 + AluJb SINE Alu 87 312 0 2136 121 3 7 chr11 72085034 72085332 -76698140 + AluSx SINE Alu 1 297 -15 1868 148 13 42 chr11 72085885 72086195 -76697277 - AluJb SINE Alu -11 301 1 1797 184 18 0 chr11 72086217 72086495 -76696977 + AluJb SINE Alu 1 283 -29 207 139 0 0 chr11 72086693 72086716 -76696756 + (A)n Simple_repeat Simple_repeat 1 26 -17 2086 136 13 3 chr11 72086716 72087024 -76696448 + AluSq SINE Alu 1 311 -2 207 139 0 0 chr11 72087024 72087043 -76696429 + (A)n Simple_repeat Simple_repeat 25 43 0 2121 132 10 3 chr11 72088439 72088734 -76694738 - AluSx SINE Alu -15 297 1 849 153 0 0 chr11 72088889 72089013 -76694459 + AluJb SINE Alu 1 124 -188 185 130 43 0 chr11 72089020 72089066 -76694406 + A-rich Low_complexity Low_complexity 1 48 0 867 110 47 0 chr11 72089565 72089692 -76693780 - FLAM_C SINE Alu 0 133 1 2250 120 0 3 chr11 72089960 72090260 -76693212 + AluSx SINE Alu 1 299 -13 2268 99 3 3 chr11 72090768 72091061 -76692411 + AluSq SINE Alu 1 293 -20 468 130 0 0 chr11 72091294 72091363 -76692109 - AluS SINE Alu -240 73 5 245 322 51 25 chr11 72091641 72091759 -76691713 + MIR SINE MIR 21 141 -67 345 261 140 25 chr11 72093088 72093245 -76690227 + L1MC5 LINE L1 7754 7928 -33 1605 146 4 17 chr11 72093312 72093551 -76689921 + AluSx SINE Alu 1 236 -76 872 195 0 23 chr11 72093583 72093757 -76689715 - LTR49-int LTR ERV1 -3689 2642 2473 1199 167 24 19 chr11 72093863 72094073 -76689399 + AluJb SINE Alu 85 295 -17 2604 49 0 7 chr11 72094663 72094970 -76688502 - AluY SINE Alu -4 307 3 2028 165 0 0 chr11 72095054 72095351 -76688121 - AluJb SINE Alu -15 297 1 840 91 41 9 chr11 72097120 72097549 -76685923 + (TG)n Simple_repeat Simple_repeat 1 442 0 189 274 157 29 chr11 72097731 72097833 -76685639 - L2 LINE L2 0 3313 3199 283 220 156 9 chr11 72098394 72098503 -76684969 - L2 LINE L2 -609 2705 2581 200 281 34 22 chr11 72098666 72098755 -76684717 - L2 LINE L2 -924 2390 2301 2050 132 4 0 chr11 72098928 72099236 -76684236 + AluJb SINE Alu 1 309 0 2170 106 0 3 chr11 72099443 72099735 -76683737 - AluSx SINE Alu -21 291 1 1955 144 0 4 chr11 72100371 72100677 -76682795 - AluJb SINE Alu 0 310 6 886 227 61 0 chr11 72100679 72100751 -76682721 + Tigger7 DNA MER2_type 20 86 -2401 2269 115 3 0 chr11 72100751 72101047 -76682425 + AluSx SINE Alu 1 297 -15 886 227 61 0 chr11 72101047 72101172 -76682300 + Tigger7 DNA MER2_type 86 229 -2258 1088 218 81 50 chr11 72101228 72101356 -76682116 + MER2 DNA MER2_type 6 129 -216 1729 121 88 29 chr11 72101356 72101490 -76681982 - AluSx SINE Alu -23 289 164 2494 89 0 0 chr11 72101490 72101803 -76681669 - AluSq SINE Alu 0 313 1 1729 121 88 29 chr11 72101803 72101941 -76681531 - AluSx SINE Alu -148 164 1 1088 218 81 50 chr11 72101941 72102133 -76681339 + MER2 DNA MER2_type 129 336 -9 477 155 12 12 chr11 72102139 72102223 -76681249 + Tigger7 DNA MER2_type 2404 2487 0 980 204 45 0 chr11 72102244 72102445 -76681027 + L1MB7 LINE L1 5405 5614 -570 807 172 0 14 chr11 72102446 72102591 -76680881 + FLAM_C SINE Alu 1 143 0 1892 167 3 3 chr11 72102600 72102899 -76680573 + AluJo SINE Alu 1 299 -13 2609 168 40 35 chr11 72102905 72103404 -76680068 + L1MB7 LINE L1 5601 6105 -79 1520 132 0 0 chr11 72103404 72103608 -76679864 + AluJb SINE Alu 87 290 -22 2609 168 40 35 chr11 72103608 72103680 -76679792 + L1MB7 LINE L1 6105 6175 -9 1550 148 10 89 chr11 72103833 72103857 -76679615 + L1PA16 LINE L1 5806 5830 -336 2260 88 3 3 chr11 72103857 72104168 -76679304 + AluSp SINE Alu 1 311 0 1550 148 10 89 chr11 72104168 72104315 -76679157 + L1PA16 LINE L1 5830 5987 -179 2599 68 0 3 chr11 72104315 72104626 -76678846 + AluSq SINE Alu 1 310 -3 1550 148 10 89 chr11 72104626 72104843 -76678629 + L1PA16 LINE L1 5987 6165 -1 832 170 59 0 chr11 72104926 72105061 -76678411 - FRAM SINE Alu -22 154 12 554 280 26 58 chr11 72105304 72105456 -76678016 - MIR SINE MIR -63 199 52 2136 119 0 3 chr11 72105456 72105772 -76677700 + AluSx SINE Alu 1 315 0 554 280 26 58 chr11 72105772 72105807 -76677665 - MIR SINE MIR -210 52 17 2096 92 85 3 chr11 72106764 72107046 -76676426 + AluSq SINE Alu 1 305 -8 554 198 56 8 chr11 72107147 72107273 -76676199 - FLAM_A SINE Alu -1 132 1 2360 105 3 0 chr11 72107444 72107750 -76675722 + AluSx SINE Alu 1 307 -5 1742 162 48 7 chr11 72107759 72108031 -76675441 + AluJo SINE Alu 1 283 -29 1911 99 4 0 chr11 72108060 72108302 -76675170 + AluSx SINE Alu 54 296 -16 197 305 19 75 chr11 72108847 72109045 -76674427 - MIR3 SINE MIR -47 215 32 301 148 0 19 chr11 72109088 72109142 -76674330 + MIR SINE MIR 48 100 -162 1546 199 10 24 chr11 72109484 72109781 -76673691 + AluJo SINE Alu 1 293 -19 2149 137 10 0 chr11 72109783 72110090 -76673382 + AluSx SINE Alu 3 312 0 291 28 0 0 chr11 72110141 72110177 -76673295 + (GGAA)n Simple_repeat Simple_repeat 1 36 0 2169 128 3 3 chr11 72110332 72110638 -76672834 - AluSg SINE Alu -4 306 1 720 192 86 0 chr11 72110983 72111134 -76672338 + FRAM SINE Alu 1 164 -2 441 0 0 0 chr11 72111863 72111912 -76671560 + (A)n Simple_repeat Simple_repeat 1 49 0 21 0 0 0 chr11 72112047 72112068 -76671404 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr11 72112228 72112248 -76671224 + (A)n Simple_repeat Simple_repeat 1 20 0 1914 52 9 9 chr11 72112747 72112978 -76670494 + AluY SINE Alu 61 291 -20 2233 111 6 29 chr11 72113012 72113371 -76670101 - AluSx SINE Alu 0 356 5 180 77 0 0 chr11 72113394 72113420 -76670052 + (CA)n Simple_repeat Simple_repeat 2 27 0 1024 170 0 0 chr11 72113655 72113814 -76669658 + AluSg/x SINE Alu 149 307 -5 826 172 118 97 chr11 72113820 72114099 -76669373 - LTR37B LTR ERV1 -178 290 6 525 191 0 0 chr11 72114161 72114266 -76669206 + (TG)n Simple_repeat Simple_repeat 2 106 0 2282 119 0 0 chr11 72114330 72114623 -76668849 - AluSq SINE Alu -20 293 1 814 270 87 4 chr11 72115441 72115682 -76667790 - MIR SINE MIR 0 262 2 2114 112 7 24 chr11 72115774 72116069 -76667403 - AluSx SINE Alu -22 290 1 2435 102 0 0 chr11 72116368 72116681 -76666791 - AluSq SINE Alu 0 313 1 548 179 82 30 chr11 72116682 72116816 -76666656 + LTR49-int LTR ERV1 3229 3369 -2962 1294 186 73 147 chr11 72116849 72117048 -76666424 + LTR49-int LTR ERV1 3131 3343 -2740 1889 163 7 3 chr11 72117048 72117336 -76666136 + AluJb SINE Alu 1 289 -23 1294 186 73 147 chr11 72117336 72117649 -76665823 + LTR49-int LTR ERV1 3343 3678 -2405 2088 134 0 3 chr11 72117649 72117955 -76665517 - AluSx SINE Alu 0 305 1 1294 186 73 147 chr11 72117955 72117996 -76665476 + LTR49-int LTR ERV1 3678 3720 -2363 314 48 0 0 chr11 72117996 72118038 -76665434 + FLAM_A SINE Alu 1 42 -91 1294 186 73 147 chr11 72118038 72118064 -76665408 + LTR49-int LTR ERV1 3720 3746 -2337 216 67 0 0 chr11 72118064 72118094 -76665378 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 1294 186 73 147 chr11 72118094 72118402 -76665070 + LTR49-int LTR ERV1 3746 4053 -2030 2431 53 0 0 chr11 72118402 72118721 -76664751 - AluY SINE Alu 0 319 1 1294 186 73 147 chr11 72118721 72118870 -76664602 + LTR49-int LTR ERV1 4053 4212 -1871 986 236 70 36 chr11 72118875 72118951 -76664521 + LTR48B LTR ERV1 191 263 -381 2304 101 3 3 chr11 72118951 72119248 -76664224 + AluSg SINE Alu 1 297 -13 986 236 70 36 chr11 72119248 72119576 -76663896 + LTR48B LTR ERV1 263 634 -10 617 172 0 9 chr11 72119624 72119740 -76663732 + FLAM_A SINE Alu 21 135 -7 1930 128 40 37 chr11 72119750 72120047 -76663425 + AluSx SINE Alu 1 298 -14 2064 115 35 0 chr11 72120091 72120377 -76663095 - AluSx SINE Alu -16 296 1 234 368 86 0 chr11 72120540 72120657 -76662815 + L2 LINE L2 3142 3268 -4 2365 95 3 3 chr11 72121080 72121384 -76662088 + AluSq SINE Alu 1 304 -9 1926 151 0 16 chr11 72121759 72122063 -76661409 + AluJb SINE Alu 1 299 -13 1791 155 36 13 chr11 72122065 72122369 -76661103 + AluJo SINE Alu 1 311 -1 339 283 28 55 chr11 72122474 72122619 -76660853 - MIR SINE MIR -11 251 111 1938 155 0 13 chr11 72122648 72122958 -76660514 - AluJo SINE Alu -6 306 1 438 216 41 0 chr11 72123107 72123204 -76660268 + MER21B LTR ERV1 1 101 -762 454 254 35 42 chr11 72123237 72123379 -76660093 + MER21B LTR ERV1 98 238 -625 1849 100 63 15 chr11 72123411 72123681 -76659791 + AluSx SINE Alu 1 283 -29 21 0 0 0 chr11 72123681 72123702 -76659770 + AT_rich Low_complexity Low_complexity 1 21 0 879 192 0 13 chr11 72123711 72123867 -76659605 - AluJo SINE Alu -157 155 2 1394 238 86 32 chr11 72123871 72124346 -76659126 + MER21B LTR ERV1 303 803 -60 517 186 16 23 chr11 72124386 72124515 -76658957 + MER4C LTR ERV1 1 128 -337 268 214 43 0 chr11 72124532 72124602 -76658870 + LTR59 LTR ERV1 208 280 -317 1967 76 8 0 chr11 72124606 72124842 -76658630 + AluSp SINE Alu 1 238 -75 337 125 0 42 chr11 72124863 72124935 -76658537 + (GGAA)n Simple_repeat Simple_repeat 4 72 0 463 130 29 167 chr11 72124981 72125119 -76658353 + MER4C LTR ERV1 168 286 -179 1963 140 14 0 chr11 72125119 72125442 -76658030 - AluSx SINE Alu 0 327 1 963 145 0 14 chr11 72125454 72125599 -76657873 - FLAM_C SINE Alu 0 143 1 1570 220 12 0 chr11 72125600 72125923 -76657549 + LTR51 LTR ERV1 345 671 0 2179 288 7 10 chr11 72125944 72126541 -76656931 + MER21-int LTR ERV1 3396 3993 -2765 2035 145 0 0 chr11 72126541 72126860 -76656612 - AluSx SINE Alu 0 319 1 1348 159 45 102 chr11 72126863 72127197 -76656275 + MER21-int LTR ERV1 1990 2304 -1887 * 799 74 0 89 chr11 72127198 72127286 -76656186 - L1PA14 LINE L1 -1 6160 6087 2202 131 0 0 chr11 72127286 72127583 -76655889 - AluSx SINE Alu -15 297 1 799 74 0 89 chr11 72127583 72127629 -76655843 - L1PA14 LINE L1 -74 6087 6038 2481 95 0 45 chr11 72127633 72127669 -76655803 - THE1C LTR MaLR -13 362 326 2114 141 0 0 chr11 72127669 72127966 -76655506 - AluSx SINE Alu -11 301 5 2481 95 0 45 chr11 72127966 72128308 -76655164 - THE1C LTR MaLR -49 326 1 662 59 17 59 chr11 72128308 72128427 -76655045 - L1PA14 LINE L1 -119 6042 5929 1607 185 155 52 chr11 72128427 72128622 -76654850 + MER21-int LTR ERV1 2301 2474 -1717 2072 121 0 10 chr11 72128622 72128911 -76654561 + AluSx SINE Alu 1 288 -24 254 50 25 0 chr11 72128911 72128951 -76654521 + (CATAA)n Simple_repeat Simple_repeat 2 42 0 1607 185 155 52 chr11 72128959 72129227 -76654245 + MER21-int LTR ERV1 2474 2812 -1379 854 186 77 16 chr11 72129232 72129426 -76654046 - MER21-int LTR ERV1 -1939 2252 2047 3470 92 43 53 chr11 72129431 72130032 -76653440 - LTR61 LTR ERV1 0 595 1 10400 218 33 19 chr11 72130034 72133218 -76650254 - HERV3 LTR ERV1 0 8426 5136 648 207 25 0 chr11 72133194 72133315 -76650157 - HERV3 LTR ERV1 -4602 3824 3701 * 1299 196 8 0 chr11 72133307 72133552 -76649920 - HERV3 LTR ERV1 -5950 2476 2230 1351 61 0 0 chr11 72133552 72133716 -76649756 - AluY SINE Alu 0 311 148 201 313 21 21 chr11 72133945 72134041 -76649431 + CT-rich Low_complexity Low_complexity 4 99 0 1841 224 53 0 chr11 72134144 72134502 -76648970 - HERV3 LTR ERV1 -6341 2085 1709 * 4061 219 90 46 chr11 72134498 72135979 -76647493 - HERV3 LTR ERV1 -7017 1409 1 3314 94 61 48 chr11 72135979 72136550 -76646922 - LTR61 LTR ERV1 0 595 14 189 0 0 0 chr11 72136550 72136571 -76646901 + (TTA)n Simple_repeat Simple_repeat 2 22 0 3314 94 61 48 chr11 72136571 72136586 -76646886 - LTR61 LTR ERV1 -581 14 1 1754 187 75 123 chr11 72136609 72137018 -76646454 + MER21-int LTR ERV1 2814 3186 -1005 2408 84 0 34 chr11 72137018 72137340 -76646132 + AluY SINE Alu 1 311 0 1754 187 75 123 chr11 72137340 72137540 -76645932 + MER21-int LTR ERV1 3186 3394 -797 297 0 0 0 chr11 72137552 72137585 -76645887 + (TA)n Simple_repeat Simple_repeat 1 33 0 2458 76 3 0 chr11 72137585 72137886 -76645586 - AluSp SINE Alu -11 302 1 671 110 6 55 chr11 72138002 72138165 -76645307 + (GGAGA)n Simple_repeat Simple_repeat 5 159 0 1941 117 38 14 chr11 72138906 72139075 -76644397 - AluSx SINE Alu -2 310 130 2198 105 20 3 chr11 72139075 72139369 -76644103 - AluSc SINE Alu -10 299 1 1941 117 38 14 chr11 72139369 72139489 -76643983 - AluSx SINE Alu -182 130 14 308 280 28 28 chr11 72139717 72139824 -76643648 + MIR SINE MIR 42 148 -60 395 335 57 9 chr11 72140258 72140488 -76642984 + L1ME LINE L1 5575 5815 -306 713 205 6 19 chr11 72140549 72140710 -76642762 + L1MA10 LINE L1 6175 6333 -1 2303 105 3 0 chr11 72140841 72141136 -76642336 - AluSx SINE Alu -16 296 1 417 276 103 21 chr11 72141265 72141524 -76641948 + L2 LINE L2 2773 3057 -256 7319 52 5 11 chr11 72141635 72141655 -76641817 - SVA Other Other -799 1383 1364 186 0 40 0 chr11 72141655 72141680 -76641792 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 7319 52 5 11 chr11 72141680 72143206 -76640266 - SVA Other Other -818 1364 2 1208 128 0 0 chr11 72143218 72143398 -76640074 - AluSp SINE Alu -13 300 121 573 226 55 12 chr11 72143398 72143562 -76639910 - AluY SINE Alu -11 300 130 1565 139 36 7 chr11 72143796 72144070 -76639402 - AluJo SINE Alu -30 282 1 980 161 45 25 chr11 72146925 72147124 -76636348 + LTR49-int LTR ERV1 3911 4113 -2218 207 0 0 0 chr11 72147134 72147157 -76636315 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 2424 44 0 7 chr11 72147157 72147443 -76636029 - AluY SINE Alu -25 286 1 2630 166 115 10 chr11 72147486 72147707 -76635765 + LTR64 LTR ERVK 1 197 -361 2200 89 7 0 chr11 72147707 72148009 -76635463 + AluSp SINE Alu 1 304 -9 2630 166 115 10 chr11 72148009 72148292 -76635180 + LTR64 LTR ERVK 197 558 0 1304 131 14 36 chr11 72148353 72148575 -76634897 - AluJb SINE Alu -10 302 86 325 272 126 42 chr11 72148644 72148803 -76634669 - L2 LINE L2 0 3313 3134 2131 112 0 6 chr11 72148803 72149115 -76634357 + AluSg SINE Alu 1 310 0 325 272 126 42 chr11 72149115 72149146 -76634326 - L2 LINE L2 -179 3134 3107 417 248 25 131 chr11 72149492 72149568 -76633904 - MER45A DNA AcHobo -1403 178 96 1485 114 33 48 chr11 72149568 72149840 -76633632 + AluJo SINE Alu 44 311 -1 417 248 25 131 chr11 72149840 72149961 -76633511 - MER45A DNA AcHobo -1485 96 2 197 280 20 40 chr11 72150031 72150131 -76633341 + L2 LINE L2 2876 2973 -340 1992 97 7 39 chr11 72150352 72150525 -76632947 - AluSx SINE Alu -13 299 122 307 0 23 23 chr11 72150525 72150569 -76632903 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 2068 105 3 3 chr11 72150569 72150854 -76632618 - AluSp SINE Alu -28 285 1 1992 97 7 39 chr11 72150854 72150988 -76632484 - AluSx SINE Alu -188 124 1 1722 204 32 25 chr11 72151011 72151418 -76632054 - L1MB7 LINE L1 -16 6168 5759 285 98 0 0 chr11 72152239 72152280 -76631192 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 2017 68 0 0 chr11 72152280 72152531 -76630941 - AluSg SINE Alu -32 278 28 23 33 0 0 chr11 72152993 72153023 -76630449 + GC_rich Low_complexity Low_complexity 1 30 0 338 313 42 98 chr11 72153423 72153641 -76629831 - L1ME4a LINE L1 -87 6034 5840 2279 88 16 0 chr11 72153641 72153946 -76629526 - AluSp SINE Alu -1 312 3 338 313 42 98 chr11 72153946 72154062 -76629410 - L1ME4a LINE L1 -281 5840 5719 254 216 45 45 chr11 72154080 72154168 -76629304 - L2 LINE L2 -25 3247 3160 1578 177 13 29 chr11 72154299 72154609 -76628863 + AluSx SINE Alu 1 305 -7 438 354 44 19 chr11 72154655 72155084 -76628388 - L1MC4a LINE L1 -1801 6007 5568 999 216 29 111 chr11 72155084 72155140 -76628332 - MLT2D LTR ERVL 0 520 461 282 29 0 0 chr11 72155140 72155175 -76628297 + (CA)n Simple_repeat Simple_repeat 1 35 0 999 216 29 111 chr11 72155175 72155574 -76627898 - MLT2D LTR ERVL -59 461 1 1926 135 30 0 chr11 72155745 72156041 -76627431 + AluJb SINE Alu 1 305 -7 423 119 0 0 chr11 72156049 72156116 -76627356 - AluSc SINE Alu -11 298 232 329 229 40 19 chr11 72156118 72156234 -76627238 - L1MC4a LINE L1 -749 5397 5279 3183 183 92 24 chr11 72156273 72157008 -76626464 - L1MB8 LINE L1 -37 6141 5344 1985 130 3 7 chr11 72157008 72157301 -76626171 - AluSx SINE Alu -20 292 1 3183 183 92 24 chr11 72157301 72157374 -76626098 - L1MB8 LINE L1 -834 5344 5277 1079 391 43 43 chr11 72157475 72157608 -76625864 + AluSp SINE Alu 1 133 -170 2421 44 27 0 chr11 72157608 72157906 -76625566 + AluY SINE Alu 1 306 -5 1079 391 43 43 chr11 72157906 72158074 -76625398 + AluSp SINE Alu 132 302 -1 1424 151 4 17 chr11 72158074 72158312 -76625160 + AluJb SINE Alu 2 236 -76 1272 227 17 77 chr11 72158344 72158749 -76624723 - LTR49-int LTR ERV1 -3689 2642 2262 448 218 0 35 chr11 72158786 72158956 -76624516 + CT-rich Low_complexity Low_complexity 1 164 0 2056 142 0 3 chr11 72158956 72159267 -76624205 - AluSx SINE Alu -2 310 1 2239 174 12 17 chr11 72159267 72159756 -76623716 - LTR49-int LTR ERV1 -4048 2283 1760 2296 82 3 10 chr11 72159756 72160062 -76623410 + AluSx SINE Alu 9 312 0 2354 87 3 0 chr11 72160104 72160416 -76623056 - AluSp SINE Alu 0 313 1 2296 163 5 35 chr11 72160419 72160791 -76622681 - L1MB3 LINE L1 -153 6030 5671 2148 102 3 3 chr11 72160791 72161086 -76622386 + AluSq SINE Alu 1 295 -18 2296 163 5 35 chr11 72161086 72161148 -76622324 - L1MB3 LINE L1 -512 5671 5609 2088 106 0 0 chr11 72161209 72161529 -76621943 - AluSx SINE Alu 0 320 1 446 244 199 20 chr11 72161598 72161799 -76621673 - MIR SINE MIR -3 259 23 304 360 0 0 chr11 72164050 72164222 -76619250 + G-rich Low_complexity Low_complexity 3 174 0 518 95 4 9 chr11 72165388 72165652 -76617820 + AluY SINE Alu 1 311 0 2033 107 10 13 chr11 72165878 72166178 -76617294 - AluSx SINE Alu -13 299 1 2233 105 3 0 chr11 72166579 72166884 -76616588 + AluSp SINE Alu 1 306 -7 2099 121 0 3 chr11 72166964 72167270 -76616202 + AluSx SINE Alu 1 305 -7 1616 155 10 34 chr11 72167278 72167575 -76615897 - AluJb SINE Alu -22 290 1 185 260 52 26 chr11 72170176 72170253 -76613219 + MIR SINE MIR 112 190 -72 2176 106 0 0 chr11 72170393 72170685 -76612787 - AluSx SINE Alu -20 292 1 494 240 16 16 chr11 72171417 72171542 -76611930 - MIR SINE MIR -6 256 132 804 181 0 0 chr11 72171915 72172042 -76611430 + FLAM_A SINE Alu 8 134 -8 1406 224 144 45 chr11 72172503 72172995 -76610477 + MLT1F LTR MaLR 2 542 0 1057 287 101 0 chr11 72173164 72173579 -76609893 + L2 LINE L2 2057 2513 -801 468 197 43 17 chr11 72173928 72174045 -76609427 - L1MC5 LINE L1 -37 7924 7805 3703 122 40 8 chr11 72174078 72174678 -76608794 - L1MC1 LINE L1 0 6333 5715 513 301 42 0 chr11 72174968 72175134 -76608338 + MIR SINE MIR 13 185 -77 434 248 73 82 chr11 72176321 72176384 -76607088 - MIR SINE MIR -49 213 151 2212 87 6 6 chr11 72176384 72176695 -76606777 - AluY SINE Alu 0 311 1 434 248 73 82 chr11 72176695 72176837 -76606635 - MIR SINE MIR -111 151 10 507 288 79 0 chr11 72176905 72177082 -76606390 + MIR SINE MIR 53 243 -19 426 349 101 12 chr11 72177145 72177560 -76605912 - L2 LINE L2 -527 2787 2336 1070 174 65 78 chr11 72178007 72178231 -76605241 + MER33 DNA MER1_type 3 228 -2357 2218 91 13 3 chr11 72178231 72178539 -76604933 - AluSp SINE Alu -2 311 1 1070 174 65 78 chr11 72178539 72178595 -76604877 + MER33 DNA MER1_type 228 281 -2304 1845 143 3 3 chr11 72178595 72178882 -76604590 + AluJb SINE Alu 21 307 -5 1070 174 65 78 chr11 72178882 72178922 -76604550 + MER33 DNA MER1_type 281 320 -4 560 108 0 0 chr11 72179325 72179399 -76604073 - AluSg/x SINE Alu -18 292 219 1535 59 0 0 chr11 72179399 72179586 -76603886 - AluY SINE Alu -124 187 1 2157 89 20 7 chr11 72180440 72180733 -76602739 - AluSx SINE Alu -15 297 1 810 252 46 101 chr11 72180733 72181019 -76602453 + L1MC4 LINE L1 7598 7852 -190 2137 115 13 0 chr11 72181019 72181324 -76602148 - AluSx SINE Alu -3 309 1 810 252 46 101 chr11 72181324 72181505 -76601967 + L1MC4 LINE L1 7852 8041 -1 487 272 74 81 chr11 72181763 72182086 -76601386 - MER102b DNA MER1_type -19 322 2 245 325 73 16 chr11 72182966 72183089 -76600383 + MIR3 SINE MIR 49 178 -30 267 54 0 0 chr11 72184541 72184578 -76598894 + (A)n Simple_repeat Simple_repeat 1 37 0 190 155 225 14 chr11 72184580 72184651 -76598821 - MIR SINE MIR -130 132 47 681 127 18 0 chr11 72184952 72185062 -76598410 - LTR64 LTR ERVK -220 338 227 2195 102 3 0 chr11 72185064 72185367 -76598105 - AluSp SINE Alu -9 304 1 238 170 0 0 chr11 72185369 72185416 -76598056 + MER33 DNA MER1_type 284 330 -33 1845 143 3 3 chr11 72185423 72185710 -76597762 + AluJb SINE Alu 21 307 -5 560 108 0 0 chr11 72186153 72186227 -76597245 - AluSg/x SINE Alu -18 291 218 1535 59 0 0 chr11 72186227 72186414 -76597058 - AluY SINE Alu -124 187 1 2283 91 0 7 chr11 72187269 72187567 -76595905 - AluSg SINE Alu -14 296 1 1972 139 0 0 chr11 72187624 72187904 -76595568 - AluSx SINE Alu -32 280 1 2168 99 0 13 chr11 72188052 72188356 -76595116 - AluSx SINE Alu -12 300 1 2118 100 3 7 chr11 72189026 72189326 -76594146 + AluSc SINE Alu 1 299 -10 544 247 201 0 chr11 72189507 72189681 -76593791 - MER58A DNA MER1_type -15 209 1 2064 110 7 23 chr11 72190544 72190853 -76592619 - AluSx SINE Alu -8 304 1 38 0 0 0 chr11 72190938 72190976 -76592496 + AT_rich Low_complexity Low_complexity 1 38 0 402 282 123 56 chr11 72191069 72191180 -76592292 - MIR SINE MIR -11 251 149 2410 86 0 6 chr11 72191180 72191495 -76591977 + AluSq SINE Alu 1 313 0 402 282 123 56 chr11 72191495 72191578 -76591894 - MIR SINE MIR -113 149 44 761 156 90 0 chr11 72191913 72192035 -76591437 - FLAM_C SINE Alu 0 133 1 1430 156 0 5 chr11 72192063 72192275 -76591197 + AluJo SINE Alu 1 211 -101 1267 134 40 13 chr11 72192280 72192504 -76590968 - LOR1b LTR ERV1 -6 455 226 450 203 147 12 chr11 72192506 72192669 -76590803 - LOR1a LTR ERV1 -311 186 2 401 151 41 0 chr11 72192674 72192747 -76590725 + Alu SINE Alu 233 308 -3 2357 96 55 0 chr11 72192790 72193133 -76590339 - LTR1 LTR ERV1 0 785 424 2341 108 0 0 chr11 72193595 72193900 -76589572 - AluSq SINE Alu -8 305 1 2024 136 10 3 chr11 72193900 72194201 -76589271 - AluSx SINE Alu -9 303 1 2176 116 0 0 chr11 72194310 72194602 -76588870 + AluSx SINE Alu 1 292 -20 2375 82 20 3 chr11 72195394 72195697 -76587775 - AluSg SINE Alu -2 308 1 1701 222 97 91 chr11 72196332 72196781 -76586691 - L1MEc LINE L1 -2500 4144 3699 2341 111 0 13 chr11 72196781 72197096 -76586376 + AluSx SINE Alu 2 312 0 1701 222 97 91 chr11 72197096 72197109 -76586363 - L1MEc LINE L1 -2945 3699 3688 813 95 9 0 chr11 72197109 72197225 -76586247 - FLAM_C SINE Alu -16 117 1 1701 222 97 91 chr11 72197225 72197589 -76585883 - L1MEc LINE L1 -2956 3688 3312 184 56 0 56 chr11 72197589 72197625 -76585847 + (TCCCC)n Simple_repeat Simple_repeat 1 34 0 282 56 0 0 chr11 72197651 72197687 -76585785 + (TCTCC)n Simple_repeat Simple_repeat 4 39 0 618 196 0 0 chr11 72197737 72197849 -76585623 - FLAM_A SINE Alu -30 112 1 1433 225 123 53 chr11 72197852 72198314 -76585158 - L1MEc LINE L1 -3314 3330 2902 1451 214 25 0 chr11 72198314 72198636 -76584836 - L1MB2 LINE L1 0 6171 5842 656 199 18 64 chr11 72198641 72198812 -76584660 - FRAM SINE Alu -3 163 1 1433 225 123 53 chr11 72198812 72198904 -76584568 - L1MEc LINE L1 -3745 2899 2731 1668 191 0 10 chr11 72198911 72199199 -76584273 - AluJb SINE Alu -27 285 1 1406 179 11 55 chr11 72199201 72199475 -76583997 - AluJo SINE Alu -16 296 35 1663 265 67 35 chr11 72199478 72199693 -76583779 - L1MEc LINE L1 -4048 2777 2570 676 182 8 0 chr11 72199693 72199814 -76583658 - FLAM_C SINE Alu -11 122 1 1663 265 67 35 chr11 72199814 72200464 -76583008 - L1MEc LINE L1 -4255 2570 1879 1895 114 76 10 chr11 72200464 72200754 -76582718 + AluSx SINE Alu 1 309 -3 1663 265 67 35 chr11 72200754 72200819 -76582653 - L1MEc LINE L1 -4946 1879 1817 2230 101 7 0 chr11 72200822 72201109 -76582363 - AluSg SINE Alu -21 289 1 720 115 65 22 chr11 72201115 72201254 -76582218 - L1MB1 LINE L1 0 6168 6024 3166 238 70 43 chr11 72201267 72201606 -76581866 - L1MEc LINE L1 -5273 1552 1224 2325 113 10 0 chr11 72201606 72201915 -76581557 - AluSx SINE Alu 0 312 1 3166 238 70 43 chr11 72201915 72202632 -76580840 - L1MEc LINE L1 -5601 1224 467 1926 215 125 17 chr11 72202757 72203266 -76580206 - MLT1E LTR MaLR -11 582 18 1411 150 13 0 chr11 72203266 72203493 -76579979 - MER30 DNA MER1_type 0 230 1 2201 126 0 10 chr11 72203555 72203864 -76579608 - AluSx SINE Alu -6 306 1 6411 205 69 33 chr11 72203903 72204682 -76578790 - L1M4 LINE L1 -4488 2158 1408 2331 104 0 0 chr11 72204682 72204979 -76578493 - AluSc SINE Alu -7 302 6 6411 205 69 33 chr11 72204979 72205171 -76578301 - L1M4 LINE L1 -5238 1408 1224 2105 119 11 0 chr11 72205171 72205478 -76577994 - AluSx SINE Alu 0 310 1 6411 205 69 33 chr11 72205478 72206519 -76576953 - L1M4 LINE L1 -5422 1224 33 217 339 45 9 chr11 72207945 72208057 -76575415 + L2 LINE L2 3153 3268 -4 5847 120 169 18 chr11 72209002 72210112 -76573360 - MER52C LTR ERV1 0 1278 1 597 305 58 9 chr11 72210813 72211036 -76572436 + MIR SINE MIR 10 243 -19 1631 220 78 23 chr11 72211097 72211569 -76571903 - MLT1D LTR MaLR 0 505 8 359 332 35 64 chr11 72213019 72213365 -76570107 - MLT1K LTR MaLR -38 550 215 253 333 162 0 chr11 72216247 72216364 -76567108 - L2 LINE L2 -4 3268 3133 811 141 0 81 chr11 72216370 72216519 -76566953 - FLAM_C SINE Alu -6 137 1 271 224 56 32 chr11 72217313 72217438 -76566034 - L2 LINE L2 -173 3099 2972 24 0 0 0 chr11 72218976 72219000 -76564472 + AT_rich Low_complexity Low_complexity 1 24 0 643 209 63 44 chr11 72219825 72220031 -76563441 + MLT1K LTR MaLR 369 578 -10 243 248 48 48 chr11 72220263 72220368 -76563104 + MIR SINE MIR 36 140 -68 441 236 32 0 chr11 72220963 72221087 -76562385 + MIR SINE MIR 112 239 -23 2477 239 77 26 chr11 72221730 72221959 -76561513 - L1MB7 LINE L1 -12 6172 5956 1500 175 101 18 chr11 72221959 72222296 -76561176 + MER47A DNA MER2_type 2 366 0 2477 239 77 26 chr11 72222296 72222848 -76560624 - L1MB7 LINE L1 -228 5956 5351 1975 122 12 61 chr11 72222852 72223179 -76560293 - AluJb SINE Alu -1 311 1 613 195 0 0 chr11 72223179 72223297 -76560175 - FLAM_C SINE Alu -3 140 23 2027 209 43 26 chr11 72223453 72223537 -76559935 - L1MB7 LINE L1 -790 5356 5275 2175 93 0 7 chr11 72223537 72223842 -76559630 + AluSc SINE Alu 1 303 0 2027 209 43 26 chr11 72223842 72224167 -76559305 - L1MB7 LINE L1 -871 5275 4931 185 0 0 39 chr11 72224167 72224193 -76559279 + (TTGG)n Simple_repeat Simple_repeat 1 25 0 2027 209 43 26 chr11 72224193 72224359 -76559113 - L1MB7 LINE L1 -1215 4931 4769 2602 68 3 3 chr11 72224542 72224852 -76558620 + AluSx SINE Alu 1 310 -2 363 181 207 19 chr11 72225051 72225159 -76558313 - MLT1G3 LTR MaLR 0 555 425 226 267 83 8 chr11 72225173 72225293 -76558179 + LTR16A1 LTR ERVL 222 350 -107 244 322 215 0 chr11 72225363 72225512 -76557960 + L2 LINE L2 2192 2372 -942 670 205 167 59 chr11 72225534 72225804 -76557668 + MLT1D LTR MaLR 20 317 -150 2215 98 3 44 chr11 72225852 72226170 -76557302 - AluSq SINE Alu -8 305 1 867 212 12 0 chr11 72226178 72226343 -76557129 - AluJo SINE Alu -26 286 120 411 295 83 62 chr11 72226344 72226585 -76556887 - HAL1 LINE L1 -1329 1178 933 288 286 30 45 chr11 72226812 72226945 -76556527 - HAL1 LINE L1 -1959 548 418 899 180 92 23 chr11 72227007 72227224 -76556248 - L1MB3 LINE L1 -14 6169 5938 330 233 50 8 chr11 72227215 72227335 -76556137 - HAL1 LINE L1 -2133 374 250 * 3458 112 4 20 chr11 72227415 72227922 -76555550 + MER1A DNA MER1_type 31 529 0 1808 147 39 18 chr11 72227955 72228241 -76555231 - AluJb SINE Alu -20 292 1 788 147 0 22 chr11 72228403 72228539 -76554933 + FLAM_A SINE Alu 1 133 0 2025 142 7 3 chr11 72229839 72230128 -76553344 - AluJb SINE Alu -15 297 8 1834 137 0 55 chr11 72230142 72230435 -76553037 - AluJb SINE Alu -35 277 1 476 248 55 0 chr11 72230435 72230580 -76552892 - L1MB3 LINE L1 -207 5971 5819 2397 84 7 7 chr11 72230580 72230878 -76552594 - AluSx SINE Alu -14 298 1 302 261 162 27 chr11 72230878 72230989 -76552483 + MIR SINE MIR 126 251 -11 32 26 0 0 chr11 72231082 72231121 -76552351 + AT_rich Low_complexity Low_complexity 1 39 0 2197 110 7 23 chr11 72231206 72231515 -76551957 + AluSx SINE Alu 1 304 -8 541 241 201 0 chr11 72232378 72232552 -76550920 + MER58A DNA MER1_type 1 209 -15 2259 100 3 7 chr11 72232733 72233034 -76550438 - AluSc SINE Alu -9 300 1 2327 93 0 13 chr11 72233704 72234006 -76549466 + AluSx SINE Alu 1 298 -14 453 153 0 71 chr11 72234157 72234255 -76549217 + AluS SINE Alu 2 92 -221 640 118 0 85 chr11 72234345 72234498 -76548974 + AluSg/x SINE Alu 141 280 -32 594 35 23 23 chr11 72234558 72234645 -76548827 + AluSg SINE Alu 2 88 -222 1560 199 34 41 chr11 72234775 72235260 -76548212 + L1M4 LINE L1 1509 1996 -4458 2257 105 14 0 chr11 72235260 72235554 -76547918 + AluSx SINE Alu 1 298 -14 1560 199 34 41 chr11 72235554 72235825 -76547647 + L1M4 LINE L1 1996 5823 -631 231 211 0 0 chr11 72235880 72235932 -76547540 + (TGAA)n Simple_repeat Simple_repeat 1 52 0 333 313 75 26 chr11 72235936 72236163 -76547309 + L2 LINE L2 2487 2724 -590 1974 128 31 3 chr11 72236331 72236619 -76546853 + AluSc SINE Alu 5 300 -9 972 314 59 55 chr11 72236636 72236732 -76546740 + L1ME3 LINE L1 4377 4471 -1691 2192 108 0 20 chr11 72236732 72237038 -76546434 + AluSq SINE Alu 1 300 -13 972 314 59 55 chr11 72237038 72238421 -76545051 + L1ME3 LINE L1 4471 5883 -279 1528 158 88 39 chr11 72238686 72238971 -76544501 - AluJo SINE Alu -13 299 1 355 226 40 32 chr11 72239096 72239220 -76544252 + L1M4 LINE L1 3903 4027 -2119 3376 233 113 23 chr11 72242220 72243301 -76540171 + MER69B DNA AcHobo 41 1218 -8 777 258 213 22 chr11 72244180 72244314 -76539158 - MLT1J2 LTR MaLR -18 432 325 2454 147 35 97 chr11 72244314 72244403 -76539069 - MER66B LTR ERV1 0 486 393 2311 63 3 17 chr11 72244403 72244704 -76538768 + AluSp SINE Alu 2 298 -15 2454 147 35 97 chr11 72244704 72244854 -76538618 - MER66B LTR ERV1 -93 393 235 1656 187 7 0 chr11 72244854 72245143 -76538329 - AluJb SINE Alu -21 291 1 2454 147 35 97 chr11 72245143 72245420 -76538052 - MER66B LTR ERV1 -251 235 1 777 258 213 22 chr11 72245420 72245599 -76537873 - MLT1J2 LTR MaLR -125 325 59 1959 168 38 28 chr11 72245599 72245997 -76537475 + pTR5 LTR ERV1 745 1146 -1292 615 123 246 0 chr11 72245986 72246108 -76537364 + pTR5 LTR ERV1 1874 2025 -413 * 302 286 10 0 chr11 72246108 72246206 -76537266 + LTR30 LTR ERV1 544 642 -80 2387 89 3 0 chr11 72246206 72246532 -76536940 + pTR5 LTR ERV1 66 392 -2046 217 333 0 0 chr11 72246796 72246862 -76536610 - L2 LINE L2 0 3313 3248 3382 159 19 88 chr11 72247114 72247854 -76535618 + LTR8 LTR ERV1 1 689 -2 2143 123 3 0 chr11 72248000 72248310 -76535162 - AluSx SINE Alu -1 311 1 23 0 0 0 chr11 72248414 72248437 -76535035 + AT_rich Low_complexity Low_complexity 1 23 0 1022 85 0 0 chr11 72248455 72248584 -76534888 - AluSq/x SINE Alu -183 129 1 895 194 0 11 chr11 72248705 72248885 -76534587 + AluJo SINE Alu 121 298 -14 187 339 76 23 chr11 72248902 72249073 -76534399 - L2 LINE L2 -163 3109 2930 3290 163 110 32 chr11 72249537 72250370 -76533102 + MER69 DNA AcHobo 1548 2456 -70 2069 114 0 10 chr11 72250370 72250668 -76532804 - AluJb SINE Alu -17 295 1 3290 163 110 32 chr11 72250668 72250728 -76532744 + MER69 DNA AcHobo 2456 2510 -16 28 61 0 0 chr11 72251089 72251138 -76532334 + GC_rich Low_complexity Low_complexity 1 49 0 192 77 0 0 chr11 72251198 72251224 -76532248 + (CGG)n Simple_repeat Simple_repeat 1 26 0 33 56 0 0 chr11 72251352 72251406 -76532066 + GC_rich Low_complexity Low_complexity 1 54 0 272 233 17 0 chr11 72251465 72251525 -76531947 + MIR SINE MIR 85 145 -63 806 78 60 0 chr11 72251726 72251842 -76531630 + FLAM_A SINE Alu 4 126 -7 394 277 136 61 chr11 72252679 72253055 -76530417 - L1ME LINE L1 -310 5811 5408 228 67 0 0 chr11 72253962 72253992 -76529480 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 834 201 0 6 chr11 72253992 72254151 -76529321 - AluJb SINE Alu -27 285 128 382 271 20 69 chr11 72254171 72254334 -76529138 - L1MC5 LINE L1 -66 7895 7746 2074 117 3 3 chr11 72254334 72254633 -76528839 - AluSx SINE Alu -13 299 1 382 271 20 69 chr11 72254633 72254716 -76528756 - L1MC5 LINE L1 -215 7746 7661 2046 115 0 10 chr11 72255159 72255463 -76528009 - AluSg SINE Alu -9 301 1 242 292 22 22 chr11 72255619 72255708 -76527764 - L2 LINE L2 -2 3270 3182 1669 219 40 8 chr11 72256685 72257086 -76526386 + MLT1C LTR MaLR 54 467 0 1176 285 24 71 chr11 72257357 72257865 -76525607 - MLT1K LTR MaLR 0 588 105 1443 174 83 72 chr11 72258669 72258949 -76524523 + MLT1A1 LTR MaLR 1 287 -78 1716 138 8 0 chr11 72258949 72259210 -76524262 - AluJo SINE Alu 0 312 50 1443 174 83 72 chr11 72259210 72259290 -76524182 + MLT1A1 LTR MaLR 287 365 0 1626 159 17 27 chr11 72259414 72259478 -76523994 + MLT1B LTR MaLR 91 154 -236 2050 122 99 12 chr11 72259478 72259823 -76523649 - THE1C LTR MaLR 0 375 1 1626 159 17 27 chr11 72259823 72260053 -76523419 + MLT1B LTR MaLR 154 382 -8 555 279 70 78 chr11 72260559 72260903 -76522569 - MLT1K LTR MaLR -111 477 137 2145 138 103 30 chr11 72261031 72261074 -76522398 - MSTA LTR MaLR 0 428 390 1660 166 0 44 chr11 72261074 72261393 -76522079 + AluJb SINE Alu 5 309 -3 2145 138 103 30 chr11 72261393 72261748 -76521724 - MSTA LTR MaLR -38 390 1 956 224 83 33 chr11 72261949 72262012 -76521460 - MLT1D LTR MaLR -2 503 445 2276 90 13 0 chr11 72262012 72262313 -76521159 - AluSx SINE Alu -7 305 1 956 224 83 33 chr11 72262313 72262633 -76520839 - MLT1D LTR MaLR -60 445 70 237 235 0 15 chr11 72262651 72262719 -76520753 - MLT1E LTR MaLR 0 467 401 2255 93 0 7 chr11 72262720 72263021 -76520451 + AluSx SINE Alu 1 299 -13 236 267 267 4 chr11 72263144 72263402 -76520070 - L2 LINE L2 -2696 618 293 189 333 15 0 chr11 72264742 72264808 -76518664 + L2 LINE L2 3197 3263 -9 454 280 28 64 chr11 72265011 72265176 -76518296 + L2 LINE L2 2836 2991 -322 2012 121 10 3 chr11 72265176 72265473 -76517999 - AluSx SINE Alu -13 299 1 454 280 28 64 chr11 72265473 72265557 -76517915 + L2 LINE L2 2991 3076 -237 2519 58 3 0 chr11 72265561 72265871 -76517601 + AluY SINE Alu 1 311 0 2319 79 0 3 chr11 72265980 72266284 -76517188 - AluY SINE Alu -6 305 3 2260 91 7 0 chr11 72266308 72266606 -76516866 - AluSx SINE Alu -12 300 1 381 22 0 0 chr11 72266677 72266723 -76516749 + (TG)n Simple_repeat Simple_repeat 2 47 0 217 377 57 0 chr11 72268042 72268164 -76515308 + MIR3 SINE MIR 15 143 -65 239 302 31 0 chr11 72268693 72268789 -76514683 + MLT1K LTR MaLR 330 428 -160 211 270 95 0 chr11 72268823 72268886 -76514586 + L2 LINE L2 3242 3310 -3 358 226 183 9 chr11 72268916 72268986 -76514486 + MLT1K LTR MaLR 451 508 -80 351 0 0 0 chr11 72268986 72269025 -76514447 + (TG)n Simple_repeat Simple_repeat 2 40 0 358 226 183 9 chr11 72269025 72269069 -76514403 + MLT1K LTR MaLR 508 585 -3 1078 277 136 16 chr11 72269276 72269652 -76513820 - MLT1E LTR MaLR -172 421 1 2109 158 18 38 chr11 72269857 72270255 -76513217 + MLT1B LTR MaLR 1 390 0 2066 120 0 0 chr11 72270522 72270835 -76512637 - AluSx SINE Alu 0 313 1 609 343 56 26 chr11 72270941 72271244 -76512228 + MLT1K LTR MaLR 212 523 -65 235 200 60 0 chr11 72271284 72271334 -76512138 + LTR67 LTR ERVL 503 555 -2 233 250 49 83 chr11 72271450 72271594 -76511878 + L1ME2 LINE L1 6018 6156 -8 207 0 0 0 chr11 72276209 72276232 -76507240 + (A)n Simple_repeat Simple_repeat 1 23 0 271 284 9 26 chr11 72276344 72276460 -76507012 + L1ME4a LINE L1 6007 6120 -1 788 246 218 25 chr11 72277200 72277594 -76505878 - MLT1D LTR MaLR -35 470 1 195 273 30 45 chr11 72277628 72277694 -76505778 - L2 LINE L2 0 3313 3249 1907 100 0 71 chr11 72277694 72278028 -76505444 - AluSg SINE Alu 0 312 1 1357 134 41 24 chr11 72278031 72278400 -76505072 - LTR46 LTR ERV1 0 460 1 221 276 17 0 chr11 72278564 72278622 -76504850 - L2 LINE L2 -13 3300 3242 300 274 74 47 chr11 72278931 72279121 -76504351 + L2 LINE L2 1488 1682 -1632 2286 84 3 0 chr11 72279344 72279641 -76503831 + AluSx SINE Alu 1 298 -14 201 353 52 9 chr11 72279715 72279831 -76503641 + L2 LINE L2 3138 3258 -14 266 204 22 44 chr11 72280487 72280668 -76502804 + (TATATG)n Simple_repeat Simple_repeat 4 180 0 320 352 104 64 chr11 72280791 72281339 -76502133 + L1MEd LINE L1 48 617 -5502 2032 122 3 3 chr11 72281447 72281743 -76501729 + AluSx SINE Alu 1 296 -16 1146 298 104 49 chr11 72281946 72283242 -76500230 + L1M4 LINE L1 2692 4074 -2072 2216 113 0 0 chr11 72283242 72283552 -76499920 + AluSg SINE Alu 1 310 0 1146 298 104 49 chr11 72283552 72283664 -76499808 + L1M4 LINE L1 4074 4178 -1968 2464 288 83 33 chr11 72283781 72285039 -76498433 + L1MEc LINE L1 10 1348 -5048 1971 117 4 0 chr11 72285039 72285357 -76498115 + AluY SINE Alu 1 319 0 2464 288 83 33 chr11 72285357 72285486 -76497986 + L1MEc LINE L1 1348 1469 -4927 2035 148 0 0 chr11 72285487 72285797 -76497675 + AluJb SINE Alu 1 310 -2 858 207 37 1 chr11 72286010 72286231 -76497241 - L1M3 LINE L1 -376 5807 5581 212 394 8 8 chr11 72286249 72286381 -76497091 - MIR SINE MIR -35 227 96 1754 88 4 0 chr11 72286387 72286615 -76496857 - AluSx SINE Alu -83 229 1 542 55 14 14 chr11 72286615 72286681 -76496791 - AluSq/x SINE Alu -175 137 69 1332 135 5 0 chr11 72286681 72286881 -76496591 - AluSx SINE Alu -109 203 3 2249 103 0 0 chr11 72286888 72287188 -76496284 - AluSc SINE Alu -9 300 1 367 296 11 57 chr11 72287199 72287375 -76496097 - HAL1 LINE L1 -1677 830 663 1341 192 30 59 chr11 72287375 72287509 -76495963 + MLT1D LTR MaLR 1 137 -368 1528 157 80 3 chr11 72287509 72287795 -76495677 + AluJo SINE Alu 1 308 -4 1341 192 30 59 chr11 72287795 72287999 -76495473 + MLT1D LTR MaLR 137 329 -176 2370 93 0 0 chr11 72288001 72288313 -76495159 + AluSx SINE Alu 1 312 0 975 225 126 30 chr11 72288438 72288740 -76494732 + MLT1A1 LTR MaLR 32 362 -3 331 356 57 10 chr11 72289669 72289863 -76493609 - MIR SINE MIR -35 227 25 716 186 155 0 chr11 72290191 72290352 -76493120 - MLT1D LTR MaLR -12 493 308 228 67 0 0 chr11 72290353 72290383 -76493089 + (T)n Simple_repeat Simple_repeat 1 30 0 1864 119 29 7 chr11 72492888 72493166 -76290306 - AluSq SINE Alu -29 284 1 2343 272 105 35 chr11 72493167 72494404 -76289068 - L1M4 LINE L1 -1574 4572 3249 275 119 0 0 chr11 72494406 72494448 -76289024 + MER115 DNA AcHobo 1 42 -651 1991 129 0 19 chr11 72494826 72495136 -76288336 + AluSx SINE Alu 1 304 -8 471 301 45 11 chr11 72495140 72495316 -76288156 - MIR SINE MIR -5 257 76 411 135 54 0 chr11 72495692 72495766 -76287706 + MLT1B LTR MaLR 164 241 -149 471 215 244 0 chr11 72496895 72497030 -76286442 + MLT1B LTR MaLR 1 168 -222 2006 65 8 0 chr11 72497030 72497292 -76286180 + AluY SINE Alu 14 277 -34 742 163 15 0 chr11 72497423 72497558 -76285914 - L1MA8 LINE L1 0 6291 6155 2076 203 10 25 chr11 72497558 72498031 -76285441 - L1M4 LINE L1 -1778 4368 3901 735 345 36 47 chr11 72498044 72498600 -76284872 - L1M4 LINE L1 -2391 3755 3206 457 294 14 0 chr11 72498601 72498744 -76284728 + LTR16B LTR ERVL 230 374 -90 234 256 26 0 chr11 72502451 72502529 -76280943 + (CA)n Simple_repeat Simple_repeat 2 81 0 785 180 0 16 chr11 72504592 72504775 -76278697 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 410 334 128 0 chr11 72505597 72505971 -76277501 - L2 LINE L2 -801 2513 2092 229 178 22 0 chr11 72506440 72506485 -76276987 + MIR SINE MIR 2 47 -215 742 268 55 70 chr11 72506488 72506872 -76276600 - MLT1B LTR MaLR -12 378 1 664 282 84 47 chr11 72508137 72508638 -76274834 + L2 LINE L2 2695 3202 -70 285 273 13 0 chr11 72508656 72508733 -76274739 + (TGAA)n Simple_repeat Simple_repeat 1 78 0 762 189 0 0 chr11 72508734 72508909 -76274563 + (TGGA)n Simple_repeat Simple_repeat 4 178 0 750 173 0 0 chr11 72508954 72509116 -76274356 + (TGGA)n Simple_repeat Simple_repeat 3 164 0 417 272 70 33 chr11 72509705 72509948 -76273524 + L2 LINE L2 2804 3055 -217 411 282 256 10 chr11 72510038 72510350 -76273122 - L2 LINE L2 -44 3269 2881 1665 178 74 42 chr11 72510492 72510667 -76272805 + MSTB1 LTR MaLR 16 184 -248 3644 89 6 46 chr11 72510667 72510852 -76272620 + L1PB1 LINE L1 5632 5823 -328 372 43 0 0 chr11 72510852 72510898 -76272574 + (CA)n Simple_repeat Simple_repeat 2 47 0 3644 89 6 46 chr11 72510898 72511252 -76272220 + L1PB1 LINE L1 5823 6149 -2 1665 178 74 42 chr11 72511252 72511480 -76271992 + MSTB1 LTR MaLR 184 432 0 2623 208 36 22 chr11 72512348 72513451 -76270021 + L1MB2 LINE L1 4704 5825 -346 2121 58 0 15 chr11 72513454 72513728 -76269744 + AluY SINE Alu 1 270 -41 1172 162 67 0 chr11 72513836 72514046 -76269426 + Tigger3(Golem) DNA MER2_type 2805 3028 -1 542 299 130 19 chr11 72514248 72514662 -76268810 + L1MC/D LINE L1 5009 5469 -818 746 97 0 9 chr11 72514934 72515048 -76268424 + (TGGA)n Simple_repeat Simple_repeat 1 113 0 248 341 52 22 chr11 72515708 72515843 -76267629 - MIR SINE MIR -1 261 123 2183 101 0 0 chr11 72516197 72516495 -76266977 + AluSx SINE Alu 1 298 -14 408 271 21 36 chr11 72516564 72516704 -76266768 - MIR SINE MIR -45 217 80 1923 138 0 0 chr11 72517903 72518336 -76265136 - AluSx SINE Alu 0 433 1 654 240 62 0 chr11 72518347 72518526 -76264946 - L1MB1 LINE L1 -50 6118 5929 329 330 53 21 chr11 72518719 72518907 -76264565 - L2 LINE L2 -3 3269 3076 310 310 105 2 chr11 72519044 72519182 -76264290 + MIR SINE MIR 42 191 -61 226 222 12 12 chr11 72519436 72519517 -76263955 + CT-rich Low_complexity Low_complexity 2 82 0 204 269 0 39 chr11 72519808 72519886 -76263586 + C-rich Low_complexity Low_complexity 2 76 0 220 158 18 35 chr11 72520017 72520074 -76263398 + L2 LINE L2 2880 2935 -337 298 319 86 0 chr11 72520252 72520368 -76263104 + L2 LINE L2 3142 3267 -5 1153 240 15 39 chr11 72520770 72521108 -76262364 + L1MA7 LINE L1 5916 6245 -46 1660 187 0 3 chr11 72521118 72521417 -76262055 + AluSx SINE Alu 10 307 -5 764 207 62 48 chr11 72521537 72521745 -76261727 + MLT1D LTR MaLR 8 218 -287 680 223 25 0 chr11 72521817 72521974 -76261498 + MLT1D LTR MaLR 345 505 0 947 236 70 32 chr11 72522401 72522714 -76260758 + MLT1C LTR MaLR 136 460 -7 2068 126 3 0 chr11 72523273 72523566 -76259906 + AluSq SINE Alu 1 294 -19 217 289 222 0 chr11 72524706 72524796 -76258676 - L2 LINE L2 -5 3308 3199 999 162 25 40 chr11 72524833 72525031 -76258441 + MER47A DNA MER2_type 1 195 -171 345 246 30 72 chr11 72525665 72525832 -76257640 + MIR SINE MIR 2 161 -101 244 310 14 0 chr11 72525809 72525880 -76257592 + MIR SINE MIR 28 99 -163 * 286 317 0 0 chr11 72525913 72525995 -76257477 + MIR SINE MIR 176 257 -5 715 254 128 6 chr11 72526022 72526367 -76257105 - MLT1J2 LTR MaLR -23 427 21 23 33 0 0 chr11 72526688 72526718 -76256754 + AT_rich Low_complexity Low_complexity 1 30 0 1872 155 0 10 chr11 72526722 72527018 -76256454 + AluJb SINE Alu 1 293 -19 285 287 6 83 chr11 72527281 72527438 -76256034 + MER5A DNA MER1_type 19 163 -26 217 302 135 8 chr11 72527663 72527789 -76255683 - MIR SINE MIR -119 143 2 1146 197 12 20 chr11 72527945 72528189 -76255283 - L1MB5 LINE L1 0 6174 5933 2210 110 0 10 chr11 72528190 72528500 -76254972 - AluSg SINE Alu -3 307 1 1333 92 0 0 chr11 72528500 72528673 -76254799 - AluSg/x SINE Alu -11 301 129 532 213 41 0 chr11 72528673 72528795 -76254677 - L1MB5 LINE L1 -248 5936 5810 243 268 25 89 chr11 72530487 72530644 -76252828 + L2 LINE L2 2601 2747 -567 1610 211 23 36 chr11 72531053 72531383 -76252089 + MLT2C1 LTR ERVL 8 334 -63 201 39 0 0 chr11 72531383 72531409 -76252063 + (TC)n Simple_repeat Simple_repeat 1 26 0 1610 211 23 36 chr11 72531409 72531471 -76252001 + MLT2C1 LTR ERVL 334 395 -2 199 276 53 13 chr11 72531629 72531705 -76251767 - L2 LINE L2 -49 3223 3145 2433 70 0 0 chr11 72532221 72532520 -76250952 + AluSp SINE Alu 1 299 -14 3254 228 38 35 chr11 72532563 72533599 -76249873 - L1ME1 LINE L1 -5 6161 5129 2161 175 28 10 chr11 72533599 72533988 -76249484 - MSTD LTR MaLR 0 396 1 3254 228 38 35 chr11 72533988 72534685 -76248787 - L1ME1 LINE L1 -1037 5129 2771 327 25 0 0 chr11 72534939 72534979 -76248493 + (CA)n Simple_repeat Simple_repeat 1 40 0 306 0 0 0 chr11 72535056 72535090 -76248382 + (TA)n Simple_repeat Simple_repeat 2 35 0 2051 120 3 29 chr11 72535090 72535406 -76248066 - AluSx SINE Alu -4 308 1 577 258 60 6 chr11 72535480 72535662 -76247810 - L1MD3 LINE L1 0 7995 7804 457 225 33 17 chr11 72535952 72536072 -76247400 + MER33 DNA MER1_type 9 130 -194 1907 158 3 3 chr11 72536072 72536383 -76247089 + AluSx SINE Alu 1 311 -1 734 216 6 0 chr11 72536383 72536559 -76246913 + GA-rich Low_complexity Low_complexity 1 177 0 186 43 0 0 chr11 72536669 72536692 -76246780 + (CAT)n Simple_repeat Simple_repeat 1 23 0 891 183 0 0 chr11 72536717 72536897 -76246575 + (CAT)n Simple_repeat Simple_repeat 1 180 0 744 216 0 0 chr11 72536915 72537152 -76246320 + (CAT)n Simple_repeat Simple_repeat 1 237 0 582 292 55 14 chr11 72537168 72537387 -76246085 - MIR SINE MIR -21 241 14 292 344 0 24 chr11 72537836 72537961 -76245511 + MIR SINE MIR 110 231 -31 859 338 82 9 chr11 72538070 72538511 -76244961 + MLT1K LTR MaLR 23 495 -93 340 299 73 7 chr11 72538994 72539131 -76244341 - MER103 DNA DNA -1 165 20 188 179 26 0 chr11 72539133 72539172 -76244300 + L2 LINE L2 3157 3196 -76 2005 204 45 34 chr11 72539292 72539786 -76243686 - MLT1D LTR MaLR -6 499 1 2101 109 0 23 chr11 72539872 72540176 -76243296 - AluSx SINE Alu -15 297 1 402 314 41 35 chr11 72540176 72540348 -76243124 - L2 LINE L2 -5 3308 3136 183 322 22 33 chr11 72541336 72541426 -76242046 + MIR SINE MIR 16 104 -158 212 86 29 0 chr11 72541799 72541834 -76241638 + (GA)n Simple_repeat Simple_repeat 2 37 0 756 213 13 58 chr11 72541834 72542059 -76241413 + MLT1D LTR MaLR 181 395 -110 2116 119 3 3 chr11 72542068 72542378 -76241094 - AluSg SINE Alu 0 310 1 729 183 0 0 chr11 72542378 72542493 -76240979 - AluJo/FLAM SINE Alu -186 116 2 375 265 0 10 chr11 72542504 72542602 -76240870 + MLT1D LTR MaLR 409 505 0 181 279 81 35 chr11 72544325 72544411 -76239061 + MIR SINE MIR 103 192 -70 182 343 14 0 chr11 72544965 72545038 -76238434 - MER5B DNA MER1_type -37 141 68 259 163 0 0 chr11 72546405 72546448 -76237024 - L2 LINE L2 -6 3266 3224 330 203 0 0 chr11 72549000 72549069 -76234403 + MER58 DNA MER1_type 2351 2419 -1 4105 64 25 0 chr11 72550396 72550909 -76232563 - L1PA8 LINE L1 -17 6155 5630 860 282 77 26 chr11 72550909 72551341 -76232131 - MLT1C LTR MaLR -7 460 5 2371 78 0 0 chr11 72551447 72551766 -76231706 - AluY SINE Alu 0 311 1 184 346 87 19 chr11 72551797 72551901 -76231571 + L2 LINE L2 3162 3272 0 202 349 71 16 chr11 72552402 72552528 -76230944 + MIR SINE MIR 7 139 -123 527 279 84 11 chr11 72552603 72552793 -76230679 - MIR SINE MIR -15 247 44 437 159 0 0 chr11 72552864 72552933 -76230539 + AluJ/FLAM SINE Alu 1 69 -243 1233 253 56 28 chr11 72553032 72553427 -76230045 + LTR10C LTR ERV1 186 591 0 544 297 46 39 chr11 72553427 72553686 -76229786 + HERVI LTR ERV1 2 262 -7523 1636 309 35 52 chr11 72553983 72554912 -76228560 + HERVI LTR ERV1 657 1570 -6215 1472 172 7 0 chr11 72555013 72555286 -76228186 + AluY SINE Alu 37 311 0 908 185 39 19 chr11 72555309 72555514 -76227958 + MLT1B LTR MaLR 165 373 -17 1758 171 3 13 chr11 72557085 72557400 -76226072 - AluJo SINE Alu 0 312 1 485 263 45 8 chr11 72558123 72558256 -76225216 + MIR SINE MIR 31 168 -94 672 315 62 33 chr11 72558511 72558834 -76224638 - MER113 DNA MER1_type? -54 467 155 2007 182 5 31 chr11 72558834 72559091 -76224381 + L1MB3 LINE L1 5808 6053 -130 2275 75 17 3 chr11 72559091 72559385 -76224087 + AluY SINE Alu 1 298 -13 2007 182 5 31 chr11 72559385 72559512 -76223960 + L1MB3 LINE L1 6053 6182 -1 2331 94 0 3 chr11 72559521 72559830 -76223642 + AluSc SINE Alu 1 308 -1 672 315 62 33 chr11 72559830 72559950 -76223522 - MER113 DNA MER1_type? -373 148 1 1142 238 8 0 chr11 72559970 72560205 -76223267 + MIR SINE MIR 21 257 -5 2221 193 41 0 chr11 72560524 72560943 -76222529 + L1MB5 LINE L1 5731 6166 -8 1008 243 46 66 chr11 72561718 72562084 -76221388 - MLT1B LTR MaLR -28 362 4 1097 325 43 22 chr11 72562086 72562713 -76220759 - L1ME3A LINE L1 -61 6109 5470 326 164 30 0 chr11 72562729 72562796 -76220676 - Alu SINE Alu 0 302 234 270 313 102 7 chr11 72562801 72562948 -76220524 - L2 LINE L2 -610 2704 2544 2236 123 0 0 chr11 72563908 72564217 -76219255 - AluSg SINE Alu -1 309 1 435 301 71 53 chr11 72564749 72565015 -76218457 + L2 LINE L2 3042 3312 -1 277 77 0 0 chr11 72565273 72565312 -76218160 + AluJ/FLAM SINE Alu 61 99 -203 512 129 0 11 chr11 72565314 72565407 -76218065 + (TTCC)n Simple_repeat Simple_repeat 1 92 0 1709 168 30 16 chr11 72565407 72565711 -76217761 - AluJo SINE Alu -4 308 1 412 171 37 0 chr11 72565892 72565964 -76217508 - MER45A DNA AcHobo -1403 178 101 1852 168 0 7 chr11 72565964 72566268 -76217204 + AluJo SINE Alu 1 302 -10 373 354 73 12 chr11 72566277 72566619 -76216853 + MLT1I LTR MaLR 46 408 -1 382 268 49 118 chr11 72566733 72566979 -76216493 - L2 LINE L2 -16 3256 3028 192 77 0 0 chr11 72566982 72567008 -76216464 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 180 0 0 0 chr11 72567135 72567155 -76216317 + (CA)n Simple_repeat Simple_repeat 1 20 0 233 196 18 0 chr11 72567190 72567246 -76216226 + (CA)n Simple_repeat Simple_repeat 2 58 0 571 226 107 18 chr11 72567437 72567605 -76215867 - MER63A DNA MER1_type -27 183 1 268 316 39 39 chr11 72570741 72570896 -76212576 - L2 LINE L2 0 3313 3159 458 202 44 2 chr11 72571798 72571977 -76211495 + MER20 DNA MER1_type 1 217 -2 4497 87 0 0 chr11 72572108 72572694 -76210778 + L1PB1 LINE L1 5566 6151 0 350 269 248 61 chr11 72572696 72573023 -76210449 + L1MC/D LINE L1 5414 5801 -2007 191 295 66 0 chr11 72574264 72574325 -76209147 + L2 LINE L2 3244 3308 -5 387 327 42 100 chr11 72574664 72574701 -76208771 + L1MB7 LINE L1 5277 5315 -847 2468 69 0 0 chr11 72574701 72575004 -76208468 + AluSg SINE Alu 1 303 -7 387 327 42 100 chr11 72575004 72575345 -76208127 + L1MB7 LINE L1 5315 5633 -529 329 346 88 11 chr11 72575377 72575559 -76207913 + L1MB7 LINE L1 5711 5906 -278 2202 116 7 0 chr11 72575579 72575882 -76207590 + AluSx SINE Alu 1 305 -7 357 248 44 22 chr11 72576067 72576204 -76207268 + MLT1I LTR MaLR 256 395 -14 189 0 0 0 chr11 72576392 72576413 -76207059 + (TA)n Simple_repeat Simple_repeat 1 21 0 3463 186 70 29 chr11 72576448 72577528 -76205944 - L1MB7 LINE L1 -14 6170 5040 202 111 0 44 chr11 72577528 72577573 -76205899 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 2037 110 47 7 chr11 72577576 72578053 -76205419 - AluSx SINE Alu 0 312 1 434 253 200 0 chr11 72578055 72578205 -76205267 - L1MB7 LINE L1 -1090 5056 4877 492 235 73 0 chr11 72578705 72578841 -76204631 - L1MB7 LINE L1 -1264 4882 4737 248 207 55 110 chr11 72579011 72579087 -76204385 - L1MB7 LINE L1 -1419 4727 4661 2363 103 0 0 chr11 72579087 72579399 -76204073 + AluSx SINE Alu 1 312 0 248 207 55 110 chr11 72579399 72579467 -76204005 - L1MB7 LINE L1 -1485 4661 4591 196 325 24 12 chr11 72579894 72579977 -76203495 + L2 LINE L2 3189 3272 0 256 348 54 0 chr11 72581424 72581536 -76201936 - L2 LINE L2 -1 3312 3195 214 376 64 7 chr11 72581836 72581977 -76201495 - MIR SINE MIR -74 188 40 734 266 65 60 chr11 72582004 72582407 -76201065 - MLT1C LTR MaLR -17 450 46 193 343 29 19 chr11 72583138 72583243 -76200229 + MIR SINE MIR 35 140 -68 180 239 104 30 chr11 72584586 72584653 -76198819 - L2 LINE L2 0 3272 3201 468 256 65 0 chr11 72584702 72584870 -76198602 + (CAGGG)n Simple_repeat Simple_repeat 2 180 0 189 237 0 0 chr11 72585299 72585337 -76198135 - MIR SINE MIR -60 148 111 258 81 0 48 chr11 72585524 72585586 -76197886 + (TTAA)n Simple_repeat Simple_repeat 3 61 0 2341 54 7 3 chr11 72585915 72586212 -76197260 + AluYa5 SINE Alu 6 303 -8 203 146 24 0 chr11 72586574 72586615 -76196857 - L2 LINE L2 -213 3059 3018 547 271 28 0 chr11 72586758 72586902 -76196570 + MIR SINE MIR 47 194 -68 237 309 64 9 chr11 72586970 72587080 -76196392 - L2 LINE L2 -31 3241 3126 385 343 12 0 chr11 72587259 72587425 -76196047 + (CA)n Simple_repeat Simple_repeat 1 168 0 336 323 5 38 chr11 72587389 72587575 -76195897 + (CATA)n Simple_repeat Simple_repeat 1 180 0 * 429 343 11 0 chr11 72587530 72587705 -76195767 + (CA)n Simple_repeat Simple_repeat 2 178 0 567 266 131 10 chr11 72588684 72588883 -76194589 + MIR SINE MIR 19 241 -21 252 319 124 0 chr11 72589522 72589635 -76193837 + MIR SINE MIR 21 147 -61 348 321 60 18 chr11 72590228 72590396 -76193076 - MIR SINE MIR 0 262 88 317 296 0 23 chr11 72591528 72591616 -76191856 + MIR SINE MIR 107 192 -70 239 324 159 14 chr11 72591879 72592169 -76191303 - LTR33 LTR ERVL -187 334 3 751 247 5 0 chr11 72592898 72593084 -76190388 + BaEV-int LTR ERV1 1454 1640 -5009 1468 146 9 0 chr11 72593085 72593311 -76190161 + AluSg/x SINE Alu 71 298 -12 277 354 123 24 chr11 72593414 72593705 -76189767 + L3 LINE CR1 1230 1576 -1 426 272 0 18 chr11 72594239 72594353 -76189119 + L2 LINE L2 3197 3308 -5 656 232 82 10 chr11 72594531 72594725 -76188747 + L1MC4a LINE L1 6657 6864 -944 4793 255 70 64 chr11 72594748 72597027 -76186445 + L1MEc LINE L1 45 2336 -4060 794 186 85 0 chr11 72597034 72597233 -76186239 + L1MC4 LINE L1 6933 7148 -894 523 183 0 42 chr11 72597236 72597356 -76186116 + L1MC4 LINE L1 7213 7327 -715 * 735 265 48 82 chr11 72597343 72597868 -76185604 + L1MC4 LINE L1 7536 8042 0 591 249 41 20 chr11 72599184 72599381 -76184091 + L1MC4 LINE L1 6818 7018 -1024 * 847 160 21 129 chr11 72599375 72599411 -76184061 + L1MC3 LINE L1 7523 7561 -224 2270 119 3 22 chr11 72599411 72599730 -76183742 + AluSq SINE Alu 1 313 0 847 160 21 129 chr11 72599730 72599980 -76183492 + L1MC3 LINE L1 7561 7778 -7 291 163 11 22 chr11 72601174 72601266 -76182206 + CT-rich Low_complexity Low_complexity 2 92 0 220 324 0 0 chr11 72601267 72601341 -76182131 + C-rich Low_complexity Low_complexity 1 74 0 682 274 57 29 chr11 72601880 72602125 -76181347 + MIR SINE MIR 5 256 -6 266 279 13 13 chr11 72602123 72602202 -76181270 - L2 LINE L2 -1 3271 3193 * 2193 97 7 0 chr11 72602306 72602638 -76180834 - AluSx SINE Alu 0 334 1 594 192 46 8 chr11 72603350 72603480 -76179992 + MIR SINE MIR 20 154 -108 574 252 114 0 chr11 72603643 72603853 -76179619 - L1ME3A LINE L1 -8 6231 5998 1232 231 77 96 chr11 72603867 72605138 -76178334 - L1ME3A LINE L1 -288 5951 4626 1488 215 26 7 chr11 72605159 72605466 -76178006 - AluSq SINE Alu 0 313 1 248 246 0 0 chr11 72605492 72605553 -76177919 - L1ME3A LINE L1 -1599 4616 4556 918 203 100 8 chr11 72605829 72606070 -76177402 + MER115 DNA AcHobo 388 650 -43 1787 256 107 31 chr11 72606089 72607645 -76175827 - L1MEc LINE L1 -2898 3317 1676 23 86 0 0 chr11 72608197 72608255 -76175217 + GC_rich Low_complexity Low_complexity 1 58 0 340 284 99 14 chr11 72609124 72609265 -76174207 - MIR SINE MIR -24 238 86 917 103 97 14 chr11 72609273 72609418 -76174054 + AluJb SINE Alu 156 312 0 408 251 95 1 chr11 72610077 72610205 -76173267 + MIR SINE MIR 16 153 -55 532 176 15 0 chr11 72610682 72610813 -76172659 + GA-rich Low_complexity Low_complexity 2 134 0 681 256 98 21 chr11 72610819 72611053 -76172419 - MIR SINE MIR -5 257 6 782 247 136 73 chr11 72611160 72611688 -76171784 - L2 LINE L2 -289 2983 2421 3950 180 46 17 chr11 72611758 72613006 -76170466 - L1MB4 LINE L1 -6 6174 4892 266 292 125 0 chr11 72613797 72613917 -76169555 + L2 LINE L2 3133 3267 -5 1004 101 17 17 chr11 72613917 72614096 -76169376 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 344 351 67 6 chr11 72614096 72614261 -76169211 - MIR SINE MIR -5 257 83 609 164 0 0 chr11 72616132 72616248 -76167224 + (TGGA)n Simple_repeat Simple_repeat 1 116 0 2689 178 52 16 chr11 72616714 72616877 -76166595 - L1MC3 LINE L1 0 7785 7629 2382 106 3 0 chr11 72616877 72617180 -76166292 - AluSg SINE Alu -6 304 1 2689 178 52 16 chr11 72617180 72617577 -76165895 - L1MC3 LINE L1 -156 7629 7205 1971 127 14 20 chr11 72617608 72617900 -76165572 + AluSx SINE Alu 1 290 -22 387 302 82 38 chr11 72618371 72618530 -76164942 - MIR3 SINE MIR -42 166 1 235 228 187 32 chr11 72619335 72619366 -76164106 + L2 LINE L2 2925 2950 -363 2348 128 50 35 chr11 72619366 72619788 -76163684 + MSTA LTR MaLR 1 428 0 235 228 187 32 chr11 72619788 72619879 -76163593 + L2 LINE L2 2950 3066 -247 593 202 60 18 chr11 72619948 72620116 -76163356 - L1ME2 LINE L1 -3 6161 5987 347 283 104 0 chr11 72620244 72620409 -76163063 - L1ME2 LINE L1 -366 5800 5619 239 128 0 0 chr11 72620409 72620448 -76163024 - MSTA LTR MaLR 0 428 390 2152 123 3 0 chr11 72620448 72620741 -76162731 + AluSq SINE Alu 1 294 -19 512 112 41 61 chr11 72620750 72620848 -76162624 + AluY SINE Alu 215 310 -1 2384 137 20 0 chr11 72620853 72621246 -76162226 - MSTA LTR MaLR -27 401 1 264 278 13 0 chr11 72621257 72621351 -76162121 - L1ME2 LINE L1 -544 5620 5526 440 276 49 0 chr11 72621398 72621521 -76161951 + L2 LINE L2 3183 3311 -2 1235 286 57 22 chr11 72622152 72622701 -76160771 + L1ME3A LINE L1 5338 5905 -265 387 286 70 13 chr11 72622688 72622843 -76160629 + L1ME3A LINE L1 5475 5638 -532 * 627 290 60 27 chr11 72623114 72623448 -76160024 + L1ME3A LINE L1 5651 5995 -175 245 232 84 42 chr11 72623460 72623555 -76159917 + L1ME3A LINE L1 6063 6161 -9 225 0 0 0 chr11 72623555 72623580 -76159892 + (TG)n Simple_repeat Simple_repeat 2 26 0 1104 149 0 0 chr11 72623580 72623741 -76159731 - AluSq SINE Alu -12 301 141 323 172 31 47 chr11 72623765 72623829 -76159643 + MER7A DNA MER2_type 1 63 -285 423 83 139 0 chr11 72623878 72623950 -76159522 + MER7A DNA MER2_type 54 133 -213 2064 112 7 49 chr11 72623950 72624255 -76159217 + AluSg SINE Alu 1 292 -18 201 176 0 0 chr11 72624355 72624389 -76159083 + A-rich Low_complexity Low_complexity 1 34 0 1465 148 126 11 chr11 72625064 72625335 -76158137 - AluSg1 SINE Alu -7 302 1 220 323 0 0 chr11 72625668 72625733 -76157739 + GA-rich Low_complexity Low_complexity 2 66 0 329 207 98 12 chr11 72625866 72625948 -76157524 - L2 LINE L2 -34 3279 3191 562 232 43 37 chr11 72625976 72626140 -76157332 - MIR3 SINE MIR -4 204 40 741 243 32 42 chr11 72626143 72626563 -76156909 + MLT1J LTR MaLR 1 453 -58 259 203 29 43 chr11 72626645 72626714 -76156758 - MIR SINE MIR -59 149 82 2335 101 7 0 chr11 72627300 72627606 -76155866 - AluSg SINE Alu -2 308 1 208 261 15 31 chr11 72627851 72627916 -76155556 - MIR SINE MIR -113 149 86 293 292 49 49 chr11 72629355 72629499 -76153973 - MIR3 SINE MIR -61 147 4 293 298 38 23 chr11 72629499 72629622 -76153850 + MIR SINE MIR 37 161 -101 467 333 14 28 chr11 72629614 72629830 -76153642 - MIR SINE MIR -21 241 29 854 193 42 28 chr11 72630130 72630343 -76153129 + MER20 DNA MER1_type 3 218 -1 505 333 0 6 chr11 72631369 72631534 -76151938 + MIR SINE MIR 93 256 -6 2001 124 35 0 chr11 72631729 72632019 -76151453 + AluSq SINE Alu 1 300 -13 189 0 0 0 chr11 72633751 72633772 -76149700 + (T)n Simple_repeat Simple_repeat 1 21 0 521 188 0 27 chr11 72633806 72633955 -76149517 + CT-rich Low_complexity Low_complexity 2 146 0 1761 165 7 3 chr11 72633955 72634246 -76149226 - AluJo SINE Alu -20 292 1 242 274 71 0 chr11 72635017 72635101 -76148371 + MIR SINE MIR 94 183 -79 447 228 49 41 chr11 72635248 72635371 -76148101 + MLT1J LTR MaLR 186 309 -202 2280 107 3 0 chr11 72635477 72635775 -76147697 - AluSx SINE Alu -13 299 1 272 342 102 29 chr11 72636146 72636421 -76147051 - L3 LINE CR1 -7 1570 1276 255 295 107 9 chr11 72636417 72636529 -76146943 - L2 LINE L2 -5 3267 3145 * 378 241 28 9 chr11 72636675 72636783 -76146689 - MER81 DNA DNA 0 114 5 1140 224 120 49 chr11 72636801 72637226 -76146246 - MLT1C LTR MaLR 0 467 13 394 271 106 28 chr11 72637266 72637556 -76145916 - L2 LINE L2 -263 3009 2681 378 331 71 6 chr11 72637842 72638011 -76145461 + MIR SINE MIR 17 196 -66 184 220 40 40 chr11 72638144 72638194 -76145278 + MIR3 SINE MIR 114 163 -45 264 285 19 89 chr11 72638275 72638424 -76145048 - MIR SINE MIR -47 161 25 219 333 69 14 chr11 72639045 72639189 -76144283 + MIR3 SINE MIR 8 159 -49 435 297 158 15 chr11 72639266 72639485 -76143987 - MIR3 SINE MIR -6 256 6 2035 198 8 60 chr11 72639596 72640082 -76143390 + L1MB5 LINE L1 5543 6003 -171 187 278 69 0 chr11 72640291 72640363 -76143109 + MIR SINE MIR 20 96 -166 308 297 29 33 chr11 72640374 72640553 -76142919 + MIR SINE MIR 30 206 -56 2160 89 41 0 chr11 72641274 72641666 -76141806 - AluSx SINE Alu 0 403 1 1234 241 108 18 chr11 72642041 72642477 -76140995 + MER45B DNA AcHobo 1 475 -565 1475 213 45 47 chr11 72642524 72642602 -76140870 + MER45B DNA AcHobo 633 710 -871 2027 144 3 10 chr11 72642602 72642907 -76140565 + AluSx SINE Alu 1 303 -9 2384 84 7 0 chr11 72642909 72643207 -76140265 + AluSp SINE Alu 1 300 -13 1475 213 45 47 chr11 72643207 72643529 -76139943 + MER45B DNA AcHobo 711 1035 -5 468 164 41 12 chr11 72644192 72644363 -76139109 + (TCTCTG)n Simple_repeat Simple_repeat 4 179 0 301 354 85 22 chr11 72644208 72644431 -76139041 - L1MEd LINE L1 -4928 1191 955 * 258 330 45 34 chr11 72644952 72645040 -76138432 - MIR SINE MIR -27 181 92 233 247 14 27 chr11 72646291 72646364 -76137108 + CT-rich Low_complexity Low_complexity 1 72 0 336 246 117 23 chr11 72647970 72648141 -76135331 + LTR33 LTR ERVL 30 216 -305 261 231 33 0 chr11 72648286 72648377 -76135095 + LTR33 LTR ERVL 399 492 -29 186 365 123 8 chr11 72648377 72648691 -76134781 - L3 LINE CR1 -102 1475 1085 265 330 21 10 chr11 72648958 72649055 -76134417 + MER5B DNA MER1_type 9 106 -72 374 350 32 0 chr11 72649485 72649608 -76133864 - MER91B DNA MER1_type -19 171 45 376 343 45 56 chr11 72649723 72649991 -76133481 - L1MC5 LINE L1 -120 7841 7577 322 297 6 86 chr11 72649848 72650023 -76133449 + L1MEd LINE L1 791 951 -5168 * 784 138 72 7 chr11 72650042 72650194 -76133278 + MLT1A2 LTR MaLR 1 162 -212 494 154 34 11 chr11 72650219 72650394 -76133078 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 829 121 58 35 chr11 72650429 72650603 -76132869 - THE1C LTR MaLR 0 364 187 1007 111 17 17 chr11 72650791 72650971 -76132501 - THE1C LTR MaLR -195 180 1 483 203 8 78 chr11 72650974 72651102 -76132370 + MLT1A1 LTR MaLR 215 324 -41 1302 73 0 0 chr11 72651659 72651729 -76131743 + (TCCA)n Simple_repeat Simple_repeat 1 249 0 1302 73 0 0 chr11 72651729 72651908 -76131564 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 223 203 68 17 chr11 72652891 72652950 -76130522 + MIR SINE MIR 85 146 -62 2330 92 0 6 chr11 72653974 72654288 -76129184 - AluSq SINE Alu -1 312 1 1774 169 11 32 chr11 72654818 72655190 -76128282 - L1MB3 LINE L1 -252 5931 5568 194 140 35 0 chr11 72655190 72655247 -76128225 + T-rich Low_complexity Low_complexity 3 61 0 459 287 16 0 chr11 72655524 72655646 -76127826 + MIR SINE MIR 113 236 -26 430 376 15 10 chr11 72655947 72656149 -76127323 - MIR SINE MIR -54 208 6 187 289 12 72 chr11 72656145 72656228 -76127244 + MIR SINE MIR 111 188 -74 * 223 299 58 46 chr11 72656558 72656645 -76126827 - L2 LINE L2 -213 3059 2972 1858 155 10 7 chr11 72657798 72658107 -76125365 - AluJo SINE Alu -2 310 1 1879 148 0 3 chr11 72658147 72658430 -76125042 - AluSx SINE Alu -30 282 1 775 246 154 60 chr11 72658437 72658611 -76124861 - Charlie2a DNA MER1_type -178 2684 2528 2318 103 0 0 chr11 72658611 72658922 -76124550 - AluSx SINE Alu -1 311 1 775 246 154 60 chr11 72658922 72658979 -76124493 - Charlie2a DNA MER1_type -334 2528 2478 2243 96 3 3 chr11 72658979 72659281 -76124191 + AluSx SINE Alu 1 302 -10 775 246 154 60 chr11 72659281 72659432 -76124040 - Charlie2a DNA MER1_type -384 2478 2343 2340 68 10 0 chr11 72659432 72659727 -76123745 - AluY SINE Alu -13 298 1 775 246 154 60 chr11 72659727 72660004 -76123468 - Charlie2a DNA MER1_type -519 2343 1961 1205 178 9 9 chr11 72660015 72660240 -76123232 - AluJb SINE Alu -5 307 83 745 279 78 51 chr11 72660278 72660329 -76123143 - Charlie2a DNA MER1_type -978 1884 1836 1968 121 4 0 chr11 72660329 72660640 -76122832 - AluSg SINE Alu 0 312 1 745 279 78 51 chr11 72660640 72660996 -76122476 - Charlie2a DNA MER1_type -1026 1836 1465 1243 124 18 14 chr11 72661147 72661365 -76122107 - MER30 DNA MER1_type -8 222 4 2089 106 20 3 chr11 72661365 72661657 -76121815 + AluSq SINE Alu 1 297 -16 1961 105 3 14 chr11 72661659 72661975 -76121497 + AluSp SINE Alu 14 313 0 266 111 37 19 chr11 72662245 72662299 -76121173 - Charlie2 DNA MER1_type -2639 223 169 270 284 14 0 chr11 72662412 72662486 -76120986 + L2 LINE L2 2994 3068 -204 301 275 58 33 chr11 72662963 72663083 -76120389 - MIR SINE MIR -70 192 70 202 290 170 10 chr11 72663494 72663594 -76119878 + MIR SINE MIR 60 175 -87 397 204 39 0 chr11 72664779 72664882 -76118590 + MIR SINE MIR 59 165 -97 225 316 0 0 chr11 72665162 72665219 -76118253 - MIR SINE MIR -62 146 90 180 279 29 29 chr11 72665284 72665352 -76118120 + MIR SINE MIR 73 140 -122 859 251 117 38 chr11 72665418 72665845 -76117627 - MLT1C LTR MaLR -1 466 6 349 274 120 8 chr11 72666181 72666298 -76117174 + MIR SINE MIR 97 226 -36 697 272 98 111 chr11 72666323 72666562 -76116910 + L2 LINE L2 2469 2710 -603 1678 164 3 14 chr11 72666562 72666855 -76116617 + AluJb SINE Alu 6 295 -17 697 272 98 111 chr11 72666855 72667277 -76116195 + L2 LINE L2 2710 3158 -155 338 82 0 0 chr11 72667277 72667326 -76116146 - MADE1 DNA Mariner 0 80 32 697 272 98 111 chr11 72667326 72667480 -76115992 + L2 LINE L2 3158 3313 0 451 278 40 0 chr11 72667508 72667634 -76115838 - MIR SINE MIR -60 148 18 189 0 0 0 chr11 72667843 72667864 -76115608 + (AGGGGG)n Simple_repeat Simple_repeat 2 22 0 242 236 0 0 chr11 72667984 72668039 -76115433 - MIR SINE MIR -97 165 111 265 280 49 28 chr11 72668877 72669020 -76114452 - MLT1K LTR MaLR -191 397 252 337 279 147 0 chr11 72670144 72670273 -76113199 - MIR SINE MIR -92 170 23 2079 80 3 14 chr11 72670287 72670626 -76112846 - AluY SINE Alu 0 336 1 1885 158 7 3 chr11 72671133 72671436 -76112036 - AluSx SINE Alu -8 304 1 414 378 133 0 chr11 72671779 72672049 -76111423 - L1MC4a LINE L1 -1951 5857 5552 1833 144 3 14 chr11 72672184 72672641 -76110831 + AluSx SINE Alu 1 454 0 317 268 78 84 chr11 72672817 72672959 -76110513 + L1ME4a LINE L1 5907 6047 -74 1858 174 0 3 chr11 72672980 72673285 -76110187 - AluSx SINE Alu -8 304 1 288 189 14 0 chr11 72673803 72673877 -76109595 - Charlie5 DNA MER1_type -17 2595 2521 1130 194 102 7 chr11 72674001 72674295 -76109177 + L1MB3 LINE L1 5814 6135 -48 639 154 35 0 chr11 72675592 72675761 -76107711 + (TCCA)n Simple_repeat Simple_repeat 3 177 0 830 148 23 0 chr11 72675779 72675955 -76107517 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 953 117 8 30 chr11 72675973 72676274 -76107198 + (TCCA)n Simple_repeat Simple_repeat 1 477 0 443 314 129 16 chr11 72676634 72676889 -76106583 + L2 LINE L2 2911 3194 -119 336 235 20 20 chr11 72676902 72677000 -76106472 - LTR16C LTR ERVL -245 246 149 440 309 14 14 chr11 72677105 72677244 -76106228 - MIR SINE MIR -101 161 23 2202 164 32 84 chr11 72677299 72677926 -76105546 + L1MB7 LINE L1 5570 6163 -21 201 74 0 0 chr11 72678469 72678496 -76104976 + (ATG)n Simple_repeat Simple_repeat 1 27 0 330 279 120 32 chr11 72678558 72678716 -76104756 - MIR SINE MIR -74 188 17 357 43 0 0 chr11 72678755 72678802 -76104670 + (TG)n Simple_repeat Simple_repeat 1 47 0 1503 89 132 8 chr11 72678817 72679052 -76104420 - AluSg SINE Alu -46 264 1 505 244 41 0 chr11 72679087 72679210 -76104262 + MER5A DNA MER1_type 62 189 0 381 296 128 15 chr11 72679245 72679441 -76104031 - MIR SINE MIR -17 245 28 1267 286 76 0 chr11 72679839 72680258 -76103214 - MLT1J LTR MaLR -34 477 27 2197 118 0 3 chr11 72680734 72681040 -76102432 + AluSq SINE Alu 1 305 -8 443 298 27 58 chr11 72681800 72681988 -76101484 - MIR SINE MIR -62 200 19 2499 48 0 6 chr11 72682634 72682947 -76100525 + AluY SINE Alu 1 311 0 2122 147 0 0 chr11 72683842 72684154 -76099318 + AluSx SINE Alu 1 312 0 1166 156 0 35 chr11 72684163 72684362 -76099110 + AluJo SINE Alu 85 276 -36 1103 77 7 0 chr11 72684371 72684526 -76098946 + (GAAA)n Simple_repeat Simple_repeat 2 157 0 636 186 55 43 chr11 72684528 72684840 -76098632 + L1MC2 LINE L1 6135 6442 -1326 2132 100 0 0 chr11 72684840 72685145 -76098327 - AluSg SINE Alu 0 305 1 636 186 55 43 chr11 72685145 72685177 -76098295 + L1MC2 LINE L1 6442 7768 0 423 56 28 0 chr11 72685328 72685400 -76098072 - L1MA4A LINE L1 -5 6298 6225 1732 157 18 0 chr11 72685450 72685731 -76097741 - AluJo SINE Alu -26 286 1 697 174 0 49 chr11 72685734 72685821 -76097651 - L1MA4A LINE L1 -65 6238 6159 2440 82 0 0 chr11 72685821 72686126 -76097346 + AluSq SINE Alu 1 305 -8 697 174 0 49 chr11 72686126 72686182 -76097290 - L1MA4A LINE L1 -144 6159 6102 330 260 146 38 chr11 72686190 72686478 -76096994 + L1ME4a LINE L1 5597 5915 -206 269 248 14 6 chr11 72687558 72687645 -76095827 - MIR SINE MIR -62 146 61 289 303 118 81 chr11 72688469 72688826 -76094646 + L2 LINE L2 2897 3266 -6 1928 155 0 3 chr11 72689298 72689595 -76093877 - AluSx SINE Alu -16 296 1 1996 111 4 4 chr11 72689626 72689906 -76093566 + AluSq SINE Alu 1 280 -33 2858 159 17 21 chr11 72690011 72690588 -76092884 + L1MB3 LINE L1 5568 6142 -41 632 126 36 0 chr11 72690584 72690695 -76092777 + L1MC1 LINE L1 6219 6333 0 * 2280 63 3 33 chr11 72690708 72691009 -76092463 + AluY SINE Alu 1 292 -19 2298 71 3 7 chr11 72691055 72691350 -76092122 - AluSx SINE Alu -14 298 5 325 278 52 10 chr11 72692075 72692172 -76091300 - MIR SINE MIR -113 149 49 1688 146 56 17 chr11 72692301 72692588 -76090884 + AluJo SINE Alu 1 298 -14 334 233 124 47 chr11 72692837 72692966 -76090506 - L2 LINE L2 -3 3310 3172 210 327 56 19 chr11 72693293 72693400 -76090072 - MIR SINE MIR -104 158 48 194 268 0 54 chr11 72693747 72693803 -76089669 - MIR3 SINE MIR -52 156 104 277 54 0 0 chr11 72695146 72695183 -76088289 + MLT2A2 LTR ERVL 417 453 0 850 231 15 5 chr11 72695183 72695386 -76088086 - L1M3 LINE L1 -426 5745 5541 1832 226 24 13 chr11 72695897 72696348 -76087124 - MLT1C LTR MaLR -10 457 2 198 297 59 59 chr11 72696536 72696637 -76086835 + MIR SINE MIR 67 167 -95 494 92 0 11 chr11 72697432 72697519 -76085953 + (CA)n Simple_repeat Simple_repeat 1 86 0 2531 80 33 8 chr11 72699064 72699454 -76084018 - MLT2A1 LTR ERVL -44 400 1 356 261 0 0 chr11 72699454 72699542 -76083930 + L1MB3 LINE L1 5741 5828 -355 1818 96 3 73 chr11 72699542 72699865 -76083607 + AluSx SINE Alu 1 302 0 2244 106 3 0 chr11 72699870 72700182 -76083290 + AluSq SINE Alu 1 313 0 1186 134 6 0 chr11 72700192 72700364 -76083108 + AluSg/x SINE Alu 127 299 -13 258 269 99 1 chr11 72753270 72753377 -76030095 + MIR SINE MIR 8 125 -83 370 330 97 22 chr11 72753434 72753619 -76029853 - MIR SINE MIR -48 214 16 2025 91 0 25 chr11 72754185 72754471 -76029001 - AluSq SINE Alu 0 313 35 191 256 0 0 chr11 72754874 72754917 -76028555 + L2 LINE L2 3229 3271 -1 543 284 14 14 chr11 72754962 72755110 -76028362 - MIR SINE MIR -8 254 107 577 258 148 15 chr11 72755136 72755539 -76027933 - MLT1C LTR MaLR -10 495 7 311 273 99 5 chr11 72755863 72756004 -76027468 + MIR SINE MIR 3 152 -63 263 350 40 0 chr11 72757888 72757988 -76025484 + L2 LINE L2 3208 3311 -2 211 263 116 32 chr11 72758553 72758648 -76024824 + L2 LINE L2 3170 3272 0 1621 130 21 76 chr11 72758785 72758890 -76024582 - MER1B DNA MER1_type -2373 339 230 2125 108 0 0 chr11 72758890 72759200 -76024272 - AluSx SINE Alu 0 310 1 1621 130 21 76 chr11 72759200 72759423 -76024049 - MER1B DNA MER1_type -2482 230 28 201 147 29 0 chr11 72759432 72759466 -76024006 + GA-rich Low_complexity Low_complexity 2 36 0 414 288 68 110 chr11 72759573 72759974 -76023498 + L1MEd LINE L1 612 1027 -5154 461 181 21 0 chr11 72760029 72760123 -76023349 + MER63 DNA MER1_type 31 752 -84 1191 76 0 22 chr11 72760326 72760510 -76022962 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 236 100 25 0 chr11 72760510 72760550 -76022922 + (TTCC)n Simple_repeat Simple_repeat 1 41 0 1966 147 10 0 chr11 72760550 72760857 -76022615 - AluSx SINE Alu -2 310 1 574 261 30 18 chr11 72761721 72761886 -76021586 - MIR SINE MIR -65 197 31 581 169 26 3 chr11 72762436 72762718 -76020754 + GA-rich Low_complexity Low_complexity 1 288 0 228 184 0 0 chr11 72762749 72762798 -76020674 + GA-rich Low_complexity Low_complexity 2 50 0 1218 234 86 10 chr11 72763423 72763820 -76019652 + MLT1C LTR MaLR 6 432 -35 620 148 59 30 chr11 72764226 72764361 -76019111 + MER20 DNA MER1_type 1 139 -80 21 36 0 0 chr11 72765090 72765118 -76018354 + AT_rich Low_complexity Low_complexity 1 28 0 392 301 72 44 chr11 72765186 72765402 -76018070 - MIR SINE MIR 0 262 41 2103 60 52 0 chr11 72765471 72765787 -76017685 + AluY SINE Alu 1 330 0 264 298 32 0 chr11 72766900 72766994 -76016478 - MIR3 SINE MIR -3 205 109 183 313 78 0 chr11 72769043 72769107 -76014365 - L2 LINE L2 -1 3312 3244 187 306 13 57 chr11 72769214 72769371 -76014101 - L2 LINE L2 -333 2980 2831 470 285 8 9 chr11 72769467 72769615 -76013857 - MIR3 SINE MIR -50 158 12 340 234 9 37 chr11 72771913 72772020 -76011452 - L2 LINE L2 -336 2977 2874 2271 105 0 0 chr11 72772038 72772343 -76011129 - AluY SINE Alu -6 305 1 350 264 40 67 chr11 72774244 72774398 -76009074 + MIR SINE MIR 16 165 -71 2275 101 0 22 chr11 72774399 72774717 -76008755 - AluSx SINE Alu -1 311 1 326 301 16 16 chr11 72775660 72775785 -76007687 - MIR SINE MIR -62 146 29 255 346 50 0 chr11 72776026 72776127 -76007345 - MIR SINE MIR -114 148 43 189 0 0 0 chr11 72776437 72776458 -76007014 + (TTCA)n Simple_repeat Simple_repeat 2 22 0 1633 111 0 0 chr11 72776475 72776692 -76006780 + AluSx SINE Alu 1 217 -95 2274 112 3 0 chr11 72777189 72777501 -76005971 + AluSq SINE Alu 1 313 0 340 323 16 8 chr11 72777735 72777859 -76005613 + MIR3 SINE MIR 39 163 -45 264 130 0 0 chr11 72778933 72778979 -76004493 + (T)n Simple_repeat Simple_repeat 1 46 0 237 163 59 33 chr11 72779124 72779277 -76004195 + (TGGA)n Simple_repeat Simple_repeat 4 160 0 216 97 0 0 chr11 72779922 72779953 -76003519 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 191 402 77 0 chr11 72779975 72780092 -76003380 - L2 LINE L2 -43 3270 3145 192 182 0 0 chr11 72780519 72780563 -76002909 + CT-rich Low_complexity Low_complexity 1 44 0 516 176 6 39 chr11 72780582 72780764 -76002708 + (TCTCTG)n Simple_repeat Simple_repeat 5 180 0 573 156 17 22 chr11 72780799 72780979 -76002493 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 384 167 38 8 chr11 72780997 72781129 -76002343 + (TCTCTG)n Simple_repeat Simple_repeat 3 138 0 482 92 67 17 chr11 72781239 72781359 -76002113 + (TCCA)n Simple_repeat Simple_repeat 1 126 0 225 234 21 0 chr11 72781500 72781547 -76001925 + L2 LINE L2 3266 3313 0 204 139 0 28 chr11 72781625 72781661 -76001811 + (GGA)n Simple_repeat Simple_repeat 1 35 0 525 141 0 0 chr11 72782478 72782556 -76000916 + AluS SINE Alu 1 78 -235 381 108 0 0 chr11 72782687 72782752 -76000720 + MSTC LTR MaLR 351 415 -13 380 289 104 40 chr11 72782760 72782928 -76000544 - L2 LINE L2 -982 2332 2141 1972 158 0 3 chr11 72782928 72783232 -76000240 + AluJb SINE Alu 3 305 -7 380 289 104 40 chr11 72783232 72783312 -76000160 - L2 LINE L2 -1173 2141 2068 349 321 0 0 chr11 72783316 72783450 -76000022 - L1M4 LINE L1 -1370 4776 4643 31 0 0 0 chr11 72783450 72783481 -75999991 + AT_rich Low_complexity Low_complexity 1 31 0 2369 82 3 0 chr11 72783481 72783786 -75999686 - AluSx SINE Alu -6 306 1 2079 79 0 31 chr11 72783789 72784103 -75999369 - AluY SINE Alu 0 305 1 872 212 174 82 chr11 72784270 72784384 -75999088 + MLT1D LTR MaLR 1 103 -402 1818 100 115 4 chr11 72784384 72784653 -75998819 + AluSx SINE Alu 1 299 -13 872 212 174 82 chr11 72784653 72784987 -75998485 + MLT1D LTR MaLR 103 490 -15 2230 84 0 0 chr11 72785044 72785329 -75998143 + AluSg SINE Alu 1 285 -25 657 25 0 0 chr11 72785329 72785408 -75998064 + (CACAA)n Simple_repeat Simple_repeat 4 82 0 360 276 109 68 chr11 72785498 72785637 -75997835 + L1ME3A LINE L1 5933 6086 -84 1658 144 12 98 chr11 72785637 72785964 -75997508 - AluJb SINE Alu -13 299 1 360 276 109 68 chr11 72785964 72786045 -75997427 + L1ME3A LINE L1 6086 6162 -8 1161 111 9 13 chr11 72786448 72787396 -75996076 + (TCCA)n Simple_repeat Simple_repeat 1 1123 0 1161 77 6 11 chr11 72787396 72787577 -75995895 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 215 170 94 0 chr11 72787756 72787809 -75995663 - L2 LINE L2 0 3272 3215 288 301 218 0 chr11 72788680 72788919 -75994553 + L2 LINE L2 2661 2951 -363 358 274 80 0 chr11 72789370 72789483 -75993989 - L2 LINE L2 -2 3311 3190 817 141 30 0 chr11 72789519 72789654 -75993818 + FLAM_C SINE Alu 4 142 -1 2310 159 42 46 chr11 72789993 72790188 -75993284 - L1MB7 LINE L1 -14 6170 5976 2143 95 29 10 chr11 72790188 72790494 -75992978 - AluSx SINE Alu 0 312 1 2310 159 42 46 chr11 72790494 72790638 -75992834 - L1MB7 LINE L1 -208 5976 5831 1918 148 0 23 chr11 72790638 72790943 -75992529 - AluSx SINE Alu -14 298 1 2310 159 42 46 chr11 72790943 72791081 -75992391 - L1MB7 LINE L1 -353 5831 5694 1696 165 23 32 chr11 72791090 72791399 -75992073 - AluJo SINE Alu -6 306 1 1919 139 0 10 chr11 72791409 72791571 -75991901 - AluSx SINE Alu -20 292 133 2240 176 88 19 chr11 72791571 72792047 -75991425 - LTR22 LTR ERVK 0 509 1 1919 139 0 10 chr11 72792047 72792179 -75991293 - AluSx SINE Alu -179 133 1 932 101 0 0 chr11 72792183 72792312 -75991160 - AluSg/x SINE Alu 0 310 182 192 294 290 20 chr11 72792351 72792596 -75990876 - L2 LINE L2 -681 2633 2323 657 203 198 55 chr11 72792618 72792812 -75990660 + MSTC LTR MaLR 142 367 -61 1788 143 26 16 chr11 72792812 72793120 -75990352 + AluJb SINE Alu 1 311 -1 754 126 42 8 chr11 72793244 72793363 -75990109 - AluSq/x SINE Alu -187 125 3 1891 139 0 39 chr11 72793368 72793678 -75989794 - AluJo SINE Alu -14 298 1 315 49 0 0 chr11 72794424 72794465 -75989007 + (CA)n Simple_repeat Simple_repeat 2 42 0 393 271 0 0 chr11 72794524 72794701 -75988771 + (CA)n Simple_repeat Simple_repeat 1 177 0 510 226 0 20 chr11 72794724 72795028 -75988444 + (CA)n Simple_repeat Simple_repeat 1 297 0 1786 151 138 46 chr11 72795070 72795419 -75988053 + MSTA LTR MaLR 1 391 -37 1767 167 0 26 chr11 72795419 72795730 -75987742 - AluSx SINE Alu -7 305 3 1786 151 138 46 chr11 72795730 72795772 -75987700 + MSTA LTR MaLR 391 428 0 185 295 0 16 chr11 72795829 72795951 -75987521 + (CATA)n Simple_repeat Simple_repeat 2 121 0 222 378 8 8 chr11 72795958 72796085 -75987387 + (CA)n Simple_repeat Simple_repeat 2 128 0 274 224 65 0 chr11 72798757 72798864 -75984608 + LTR16A1 LTR ERVL 217 330 -127 197 249 141 39 chr11 72798928 72799030 -75984442 - MIR SINE MIR -71 137 16 630 39 0 0 chr11 72799376 72799453 -75984019 + (TTCC)n Simple_repeat Simple_repeat 1 77 0 192 40 0 0 chr11 72799453 72799478 -75983994 + (TCC)n Simple_repeat Simple_repeat 2 26 0 2277 112 0 3 chr11 72799481 72799795 -75983677 - AluSq SINE Alu 0 313 1 1511 171 75 7 chr11 72800772 72801064 -75982408 + AluJb SINE Alu 1 312 0 261 176 77 44 chr11 72801777 72801868 -75981604 + MIR SINE MIR 33 127 -81 304 341 15 59 chr11 72801880 72802015 -75981457 - L2 LINE L2 0 3313 3185 1187 257 92 5 chr11 72802218 72802655 -75980817 + MLT1K LTR MaLR 18 524 -64 1872 150 0 0 chr11 72802674 72802967 -75980505 - AluJo SINE Alu -14 298 6 421 218 26 103 chr11 72803565 72803721 -75979751 + MIR SINE MIR 69 212 -50 580 252 15 13 chr11 72803800 72803993 -75979479 + MIR SINE MIR 58 252 -10 837 87 0 114 chr11 72804005 72804154 -75979318 - FLAM_C SINE Alu -1 132 1 258 258 0 0 chr11 72805068 72805157 -75978315 + (TCTCTG)n Simple_repeat Simple_repeat 2 90 0 1997 126 3 0 chr11 72805226 72805520 -75977952 + AluSq SINE Alu 1 295 -18 1967 149 0 0 chr11 72806935 72807237 -75976235 + AluSx SINE Alu 1 302 -10 281 260 65 41 chr11 72807606 72807729 -75975743 + L2 LINE L2 3144 3269 -3 2220 77 3 10 chr11 72807899 72808197 -75975275 + AluSx SINE Alu 1 296 -16 293 44 67 0 chr11 72808690 72808735 -75974737 + A-rich Low_complexity Low_complexity 4 51 0 3136 125 28 60 chr11 72809714 72809941 -75973531 - MER4B LTR ERV1 -29 581 348 1905 118 42 3 chr11 72809941 72810229 -75973243 - AluSq SINE Alu -14 299 1 3136 125 28 60 chr11 72810229 72810601 -75972871 - MER4B LTR ERV1 -262 348 1 263 309 0 0 chr11 72811102 72811170 -75972302 - Charlie8 DNA MER1_type -1945 472 405 324 70 0 0 chr11 72811355 72811398 -75972074 + (T)n Simple_repeat Simple_repeat 1 43 0 466 321 27 38 chr11 72811824 72812008 -75971464 - MIR SINE MIR -73 189 8 570 304 18 6 chr11 72812609 72812780 -75970692 + MIR SINE MIR 3 175 -87 558 261 164 23 chr11 72813014 72813412 -75970060 - MLT1C LTR MaLR -2 465 5 235 238 48 0 chr11 72814503 72814566 -75968906 - MIR SINE MIR -187 75 10 229 353 41 16 chr11 72815403 72815525 -75967947 - L2 LINE L2 -14 3258 3134 2125 111 0 10 chr11 72815755 72816061 -75967411 - AluSx SINE Alu -9 303 1 182 152 196 0 chr11 72816703 72816749 -75966723 + L2 LINE L2 2243 2297 -1017 1874 186 93 2 chr11 72816766 72817185 -75966287 - MLT1D LTR MaLR -17 488 32 1809 151 0 26 chr11 72817339 72817643 -75965829 + AluJb SINE Alu 1 296 -16 1427 184 32 44 chr11 72818493 72818635 -75964837 + AluJo SINE Alu 1 143 -169 1823 152 7 10 chr11 72818635 72818944 -75964528 + AluSx SINE Alu 1 308 -4 1427 184 32 44 chr11 72818944 72819117 -75964355 + AluJo SINE Alu 143 312 0 2363 68 0 0 chr11 72819402 72819697 -75963775 - AluY SINE Alu -16 295 1 1958 142 0 3 chr11 72820803 72821098 -75962374 + AluSx SINE Alu 1 294 -18 2106 135 0 0 chr11 72821098 72821409 -75962063 + AluSx SINE Alu 1 311 -1 24 0 0 0 chr11 72821430 72821454 -75962018 + AT_rich Low_complexity Low_complexity 1 24 0 2857 85 92 5 chr11 72821595 72822007 -75961465 - LTR7 LTR ERV1 -2 448 1 2500 46 0 0 chr11 72822013 72822316 -75961156 - AluY SINE Alu -8 303 1 2237 106 45 13 chr11 72822317 72822694 -75960778 - HERVH LTR ERV1 -3 7710 7322 1321 124 23 9 chr11 72822692 72822909 -75960563 - HERVH LTR ERV1 -1894 5819 5600 * 4078 160 3 1 chr11 72822910 72823571 -75959901 - HERVH LTR ERV1 -2564 5149 4488 1040 69 0 0 chr11 72823573 72823717 -75959755 - HERVH LTR ERV1 -3720 3993 3850 * 4080 89 38 0 chr11 72823712 72824297 -75959175 - HERVH LTR ERV1 -3967 3746 3140 * 19103 94 15 55 chr11 72824276 72827396 -75956076 - HERVH LTR ERV1 -4718 2995 1 2596 97 122 5 chr11 72827398 72827799 -75955673 - LTR7 LTR ERV1 -2 448 1 250 243 68 0 chr11 72827830 72827904 -75955568 + MIR SINE MIR 128 206 -56 1937 115 28 3 chr11 72828134 72828422 -75955050 + AluSx SINE Alu 1 295 -17 1835 144 12 46 chr11 72828432 72828782 -75954690 + L1PA15-16 LINE L1 1435 1795 -4587 1470 163 57 14 chr11 72828782 72829064 -75954408 + AluJo SINE Alu 1 294 -18 1835 144 12 46 chr11 72829064 72829105 -75954367 + L1PA15-16 LINE L1 1795 2253 -4129 2185 113 0 0 chr11 72829107 72829408 -75954064 + AluY SINE Alu 1 301 -10 184 286 59 109 chr11 72830095 72830179 -75953293 + L2 LINE L2 3200 3278 -35 1691 143 95 110 chr11 72830179 72830514 -75952958 + MSTD LTR MaLR 1 331 -65 1996 137 0 13 chr11 72830514 72830821 -75952651 + AluSx SINE Alu 10 312 0 1691 143 95 110 chr11 72830821 72830884 -75952588 + MSTD LTR MaLR 331 393 -3 184 286 59 109 chr11 72830884 72830918 -75952554 + L2 LINE L2 3278 3312 -1 200 214 18 0 chr11 72830929 72830985 -75952487 + (TGGG)n Simple_repeat Simple_repeat 4 60 0 180 374 37 0 chr11 72831099 72831206 -75952266 - MIR SINE MIR -13 249 139 31 26 0 0 chr11 72831225 72831263 -75952209 + AT_rich Low_complexity Low_complexity 1 38 0 210 197 152 0 chr11 72831323 72831389 -75952083 + L2 LINE L2 3230 3305 -8 213 232 0 138 chr11 72831396 72831431 -75952041 - MIR SINE MIR -65 143 105 2016 113 10 16 chr11 72831431 72831742 -75951730 + AluSx SINE Alu 1 309 -3 213 232 0 138 chr11 72831742 72831828 -75951644 - MIR SINE MIR -103 105 37 2215 107 0 0 chr11 72832582 72832881 -75950591 - AluSx SINE Alu -13 299 1 185 200 50 50 chr11 72832993 72833053 -75950419 + MIR3 SINE MIR 104 163 -45 287 210 0 62 chr11 72833395 72833429 -75950043 + MER20B DNA MER1_type 692 727 -56 1797 165 0 16 chr11 72833429 72833744 -75949728 + AluJb SINE Alu 3 312 0 287 210 0 62 chr11 72833744 72833790 -75949682 + MER20B DNA MER1_type 727 767 -16 444 125 0 0 chr11 72833790 72833862 -75949610 + L1MB3 LINE L1 5836 5907 -264 1031 243 44 50 chr11 72833864 72834131 -75949341 + MER2 DNA MER2_type 10 276 -69 1163 186 202 8 chr11 72834131 72834284 -75949188 - AluJb SINE Alu 0 302 180 1850 133 4 4 chr11 72834284 72834563 -75948909 + AluSx SINE Alu 21 299 -13 1163 186 202 8 chr11 72834563 72834662 -75948810 - AluJb SINE Alu -122 180 1 1031 243 44 50 chr11 72834662 72834732 -75948740 + MER2 DNA MER2_type 276 345 0 967 188 5 10 chr11 72834732 72834929 -75948543 + L1MB3 LINE L1 5905 6100 -83 2298 109 0 0 chr11 72834962 72835274 -75948198 - AluSx SINE Alu 0 312 1 364 167 13 26 chr11 72835274 72835352 -75948120 + L1MB2 LINE L1 6081 6157 -14 1281 168 6 107 chr11 72835685 72836049 -75947423 - AluJo SINE Alu 0 312 1 1001 159 0 0 chr11 72836548 72836711 -75946761 + FRAM SINE Alu 2 164 -12 292 242 0 16 chr11 72836765 72836827 -75946645 + MLT1H1 LTR MaLR 1 61 -534 413 97 16 16 chr11 72836886 72836948 -75946524 + AluJb SINE Alu 86 147 -165 * 565 152 0 0 chr11 72836947 72837039 -75946433 + AluSg/x SINE Alu 206 297 -13 614 258 0 13 chr11 72837092 72837291 -75946181 + MLT1H1 LTR MaLR 217 555 0 339 284 52 45 chr11 72837296 72837430 -75946042 - MIR SINE MIR -119 143 9 2249 95 0 40 chr11 72837712 72837847 -75945625 + AluSx SINE Alu 1 140 -172 2245 96 7 0 chr11 72837847 72838150 -75945322 + AluSx SINE Alu 1 305 -7 2249 95 0 40 chr11 72838150 72838339 -75945133 + AluSx SINE Alu 140 312 0 186 43 0 0 chr11 72838423 72838446 -75945026 + (C)n Simple_repeat Simple_repeat 1 23 0 261 0 0 0 chr11 72838568 72838597 -75944875 + (A)n Simple_repeat Simple_repeat 1 29 0 615 197 48 14 chr11 72838853 72839000 -75944472 - MIR SINE MIR -44 218 67 363 268 74 15 chr11 72839429 72839677 -75943795 - MER113 DNA MER1_type? -65 456 172 1548 241 111 19 chr11 72839677 72840145 -75943327 - MLT1J LTR MaLR 0 511 1 35 0 0 0 chr11 72840173 72840208 -75943264 + AT_rich Low_complexity Low_complexity 1 35 0 2209 96 0 7 chr11 72840291 72840594 -75942878 + AluSx SINE Alu 1 301 -11 1611 173 47 13 chr11 72840774 72841075 -75942397 + AluJb SINE Alu 2 312 0 198 0 0 0 chr11 72842591 72842613 -75940859 + (TTTTTA)n Simple_repeat Simple_repeat 1 22 0 1682 138 48 0 chr11 72842877 72843146 -75940326 - AluJb SINE Alu -30 282 1 257 295 125 0 chr11 72843273 72843385 -75940087 + L2 LINE L2 2918 3043 -229 273 218 161 0 chr11 72843412 72843499 -75939973 + MIR SINE MIR 30 130 -78 2548 129 7 30 chr11 72843668 72844010 -75939462 - MER4B LTR ERV1 0 610 278 1841 78 51 4 chr11 72844010 72844297 -75939175 - AluSp SINE Alu 0 315 17 2548 129 7 30 chr11 72844297 72844362 -75939110 - MER4B LTR ERV1 -332 278 212 1234 108 72 54 chr11 72844362 72844460 -75939012 - MER30 DNA MER1_type -1 229 134 2060 100 10 7 chr11 72844460 72844760 -75938712 - AluSg SINE Alu -9 301 1 1234 108 72 54 chr11 72844760 72844883 -75938589 - MER30 DNA MER1_type -96 134 4 213 39 0 0 chr11 72844893 72844919 -75938553 + (TTCC)n Simple_repeat Simple_repeat 4 29 0 1794 158 16 10 chr11 72844920 72845230 -75938242 - AluSx SINE Alu 0 312 1 356 115 359 0 chr11 72845233 72845311 -75938161 - MER4B LTR ERV1 -393 217 112 958 171 64 0 chr11 72845315 72845502 -75937970 - L1PB4 LINE L1 -171 5985 5787 1590 120 116 8 chr11 72845518 72845785 -75937687 - AluSg SINE Alu -14 296 1 349 225 225 27 chr11 72847496 72847607 -75935865 + L2 LINE L2 3180 3312 -1 186 329 61 12 chr11 72847615 72847697 -75935775 + MIR SINE MIR 91 176 -86 532 141 0 0 chr11 72847702 72847780 -75935692 - AluSq SINE Alu -16 297 220 1210 105 0 0 chr11 72847783 72847936 -75935536 - AluSq SINE Alu -160 153 1 270 0 0 0 chr11 72848257 72848287 -75935185 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1691 115 52 73 chr11 72848291 72848578 -75934894 - AluSx SINE Alu -31 281 1 1276 131 237 13 chr11 72848578 72848814 -75934658 - AluSg1 SINE Alu -19 290 2 2384 93 0 33 chr11 72848815 72849179 -75934293 - L1P4 LINE L1 -383 5783 5432 861 176 14 0 chr11 72849180 72849328 -75934144 - AluJb SINE Alu -10 302 153 2442 165 26 4 chr11 72849329 72849950 -75933522 - L1P4 LINE L1 -727 5439 4807 660 155 0 88 chr11 72849936 72850048 -75933424 - L1PA15-16 LINE L1 -3856 2993 2899 * 2571 78 0 0 chr11 72850048 72850356 -75933116 - AluY SINE Alu -3 308 1 660 155 0 88 chr11 72850356 72850422 -75933050 - L1PA15-16 LINE L1 -3950 2899 2829 1235 121 0 0 chr11 72850422 72850587 -75932885 - AluSc SINE Alu -12 297 133 438 189 99 0 chr11 72850587 72850698 -75932774 - L1PA15-16 LINE L1 -4011 2838 2717 2389 98 0 3 chr11 72850698 72851005 -75932467 - AluY SINE Alu -5 306 1 363 119 0 30 chr11 72851005 72851072 -75932400 - L1PA15-16 LINE L1 -3956 2893 2829 1240 137 0 0 chr11 72851072 72851240 -75932232 - AluSc SINE Alu -9 300 133 451 180 86 8 chr11 72851240 72851368 -75932104 - L1PA15-16 LINE L1 -4011 2838 2701 2041 156 0 0 chr11 72852420 72852727 -75930745 - AluSx SINE Alu -5 307 1 2072 141 0 0 chr11 72852978 72853276 -75930196 + AluJo SINE Alu 1 298 -14 2246 94 3 3 chr11 72853473 72853772 -75929700 + AluSx SINE Alu 1 299 -13 1029 156 6 17 chr11 72853772 72853952 -75929520 + AluSc SINE Alu 132 309 0 2248 127 0 0 chr11 72855051 72855350 -75928122 - AluJb SINE Alu -13 299 1 2270 124 20 0 chr11 72856242 72856548 -75926924 - AluSx SINE Alu 0 312 1 2286 93 0 3 chr11 72856557 72856848 -75926624 - AluSg SINE Alu -20 290 1 234 308 75 0 chr11 72856848 72856968 -75926504 + MER99 DNA DNA 621 749 -79 2381 49 0 23 chr11 72856968 72857274 -75926198 - AluY SINE Alu -10 301 3 24 0 0 0 chr11 72857396 72857420 -75926052 + GC_rich Low_complexity Low_complexity 1 24 0 2154 100 47 7 chr11 72857422 72857722 -75925750 - AluSq SINE Alu -1 312 1 332 224 35 0 chr11 72857722 72857807 -75925665 + MER99 DNA DNA 739 826 -2 556 266 91 25 chr11 72858088 72858287 -75925185 - MIR SINE MIR -42 220 9 364 144 140 12 chr11 72858407 72858511 -75924961 - MIR SINE MIR -62 146 40 342 318 56 46 chr11 72858896 72859091 -75924381 + MIR SINE MIR 20 216 -46 2108 118 7 13 chr11 72859200 72859506 -75923966 - AluSx SINE Alu -8 304 1 271 280 40 13 chr11 72859506 72859581 -75923891 - L2 LINE L2 -10 3262 3186 207 139 0 0 chr11 72859888 72859924 -75923548 - L2 LINE L2 0 3313 3278 2293 109 7 0 chr11 72859995 72860297 -75923175 + AluSx SINE Alu 1 304 -8 1603 167 72 4 chr11 72860301 72860577 -75922895 + AluJo SINE Alu 1 295 -17 2678 46 0 0 chr11 72860784 72861088 -75922384 + AluY SINE Alu 1 304 -7 370 288 102 70 chr11 72861127 72861412 -75922060 - L2 LINE L2 -1 3271 2978 629 76 11 0 chr11 72861467 72861559 -75921913 + (TTCC)n Simple_repeat Simple_repeat 4 96 0 191 114 29 0 chr11 72861553 72861588 -75921884 + CT-rich Low_complexity Low_complexity 6 41 0 * 1773 187 3 16 chr11 72861604 72861919 -75921553 - AluJb SINE Alu -1 311 1 2018 107 0 33 chr11 72862068 72862367 -75921105 - AluY SINE Alu -22 289 1 2333 116 0 0 chr11 72862367 72862668 -75920804 - AluSq SINE Alu -8 305 4 183 375 58 0 chr11 72863095 72863199 -75920273 - L2 LINE L2 -633 2681 2572 403 182 91 0 chr11 72863383 72863471 -75920001 + MER20 DNA MER1_type 116 211 -8 559 76 13 0 chr11 72863507 72863586 -75919886 + MADE1 DNA Mariner 1 80 0 183 300 77 94 chr11 72864250 72864518 -75918954 - L2 LINE L2 -343 2971 2708 1686 102 34 4 chr11 72864518 72864795 -75918677 - AluSx SINE Alu 0 322 39 183 300 77 94 chr11 72864795 72864875 -75918597 - L2 LINE L2 -606 2708 2628 2325 70 39 0 chr11 72864945 72865229 -75918243 + AluSg SINE Alu 2 296 -14 199 266 47 16 chr11 72865358 72865422 -75918050 - L2 LINE L2 -14 3258 3193 2185 113 3 0 chr11 72865791 72866084 -75917388 - AluSx SINE Alu -18 294 1 183 80 0 0 chr11 72866274 72866299 -75917173 + (TTTC)n Simple_repeat Simple_repeat 2 26 0 907 134 189 0 chr11 72866427 72866591 -75916881 - AluJo SINE Alu 0 312 118 437 189 11 0 chr11 72866603 72866698 -75916774 + (CATATA)n Simple_repeat Simple_repeat 6 101 0 935 133 7 0 chr11 72866699 72866834 -75916638 - AluJo SINE Alu -176 136 1 783 152 22 14 chr11 72867171 72867309 -75916163 - AluJo SINE Alu -172 140 2 1513 191 7 34 chr11 72867310 72867604 -75915868 - AluJb SINE Alu -3 309 24 2347 87 7 0 chr11 72867751 72868051 -75915421 - AluSg1 SINE Alu -7 302 1 1070 235 82 45 chr11 72868205 72868646 -75914826 - L1MC4 LINE L1 -810 7232 6650 2120 123 3 16 chr11 72868646 72868955 -75914517 - AluSx SINE Alu -7 305 1 1070 235 82 45 chr11 72868955 72869036 -75914436 - L1MC4 LINE L1 -1392 6650 6573 295 215 17 11 chr11 72869370 72869465 -75914007 - AluSp SINE Alu -120 183 140 815 157 0 0 chr11 72869481 72869602 -75913870 + FLAM_A SINE Alu 2 122 -11 1947 148 3 3 chr11 72869632 72869923 -75913549 + AluJb SINE Alu 1 291 -21 299 262 47 9 chr11 72869924 72870031 -75913441 - L1MC4a LINE L1 -1635 6173 6063 443 235 10 0 chr11 72870037 72870135 -75913337 - MER94 DNA DNA 0 134 36 2150 107 10 3 chr11 72870580 72870869 -75912603 - AluSp SINE Alu -22 291 1 1825 144 3 53 chr11 72871350 72871521 -75911951 - AluJb SINE Alu -9 303 154 2425 67 7 7 chr11 72871521 72871821 -75911651 - AluSc SINE Alu -9 300 1 1825 144 3 53 chr11 72871821 72871968 -75911504 - AluJb SINE Alu -158 154 1 275 221 177 9 chr11 72872106 72872219 -75911253 + MIR SINE MIR 22 153 -109 202 254 85 0 chr11 72872232 72872291 -75911181 - L2 LINE L2 -9 3304 3241 563 264 103 23 chr11 72872334 72872508 -75910964 - MIR SINE MIR -47 215 28 197 344 33 0 chr11 72872741 72872802 -75910670 + L2 LINE L2 3185 3247 -25 1981 130 17 17 chr11 72873627 72873927 -75909545 - AluJb SINE Alu -12 300 1 4869 28 0 6 chr11 72874237 72874767 -75908705 - SVA Other Other 0 1386 860 2043 95 77 0 chr11 72875931 72876204 -75907268 + AluSx SINE Alu 1 294 -18 2080 243 102 35 chr11 72877220 72877662 -75905810 - L1ME3A LINE L1 -17 6153 5742 1592 114 0 0 chr11 72877662 72877872 -75905600 - AluJb SINE Alu -18 294 85 2080 243 102 35 chr11 72877872 72878766 -75904706 - L1ME3A LINE L1 -428 5742 4723 686 198 0 0 chr11 72878766 72878887 -75904585 - FLAM_C SINE Alu -12 121 1 1192 282 62 86 chr11 72878888 72879043 -75904429 - L1ME3A LINE L1 -2134 4012 3855 1015 185 0 0 chr11 72879043 72879205 -75904267 - FRAM SINE Alu 0 166 5 1192 282 62 86 chr11 72879205 72879943 -75903529 - L1ME3A LINE L1 -2291 3855 3141 25 31 0 0 chr11 72880043 72880075 -75903397 + AT_rich Low_complexity Low_complexity 1 32 0 354 222 0 0 chr11 72880084 72880147 -75903325 + AluJ/FRAM SINE Alu 233 295 -7 * 1637 196 91 32 chr11 72880144 72880553 -75902919 - MER99 DNA DNA -195 633 201 2179 127 0 13 chr11 72880596 72880911 -75902561 + AluJb SINE Alu 1 311 -1 1827 138 11 62 chr11 72880919 72881133 -75902339 + L1MB3 LINE L1 5847 6037 -146 2293 110 10 0 chr11 72881133 72881443 -75902029 + AluSp SINE Alu 1 313 0 1827 138 11 62 chr11 72881443 72881582 -75901890 + L1MB3 LINE L1 6037 6182 -1 1144 171 5 48 chr11 72881613 72881659 -75901813 + AluJo SINE Alu 92 138 -174 2101 135 0 0 chr11 72881659 72881977 -75901495 + AluSx SINE Alu 1 312 0 2266 125 0 7 chr11 72881980 72882285 -75901187 + AluSx SINE Alu 1 303 -9 1144 171 5 48 chr11 72882285 72882444 -75901028 + AluJo SINE Alu 140 292 -20 22 94 0 0 chr11 72882601 72882665 -75900807 + AT_rich Low_complexity Low_complexity 1 64 0 1967 142 38 0 chr11 72882717 72883006 -75900466 + AluSx SINE Alu 1 300 -12 2260 95 3 0 chr11 72883286 72883617 -75899855 + AluSx SINE Alu 1 332 0 2022 112 43 20 chr11 72883639 72883944 -75899528 - AluSx SINE Alu 0 312 1 332 224 35 0 chr11 72883944 72884029 -75899443 + MER99 DNA DNA 739 826 -2 556 266 91 25 chr11 72884310 72884509 -75898963 - MIR SINE MIR -42 220 9 364 144 140 12 chr11 72884630 72884734 -75898738 - MIR SINE MIR -62 146 40 342 318 56 46 chr11 72885119 72885314 -75898158 + MIR SINE MIR 20 216 -46 2136 121 3 13 chr11 72885423 72885730 -75897742 - AluSx SINE Alu -8 304 1 217 131 0 0 chr11 72885830 72885867 -75897605 + MIR SINE MIR 116 151 -111 740 75 0 0 chr11 72885891 72885984 -75897488 - AluSg/x SINE Alu -14 296 204 2374 109 0 0 chr11 72886015 72886317 -75897155 + AluSx SINE Alu 1 302 -10 307 271 8 98 chr11 72886456 72886578 -75896894 + MIR SINE MIR 30 140 -68 333 287 42 14 chr11 72887199 72887342 -75896130 - L1ME4a LINE L1 0 6121 5975 289 150 117 0 chr11 72887697 72887757 -75895715 - L1ME1 LINE L1 -49 6117 6051 2111 96 36 4 chr11 72887782 72888063 -75895409 + AluSx SINE Alu 1 290 -22 1806 181 3 16 chr11 72888214 72888528 -75894944 + AluJb SINE Alu 1 310 -2 243 0 0 0 chr11 72888633 72888660 -75894812 + (A)n Simple_repeat Simple_repeat 1 27 0 670 219 0 0 chr11 72888716 72888835 -75894637 + FLAM_A SINE Alu 1 119 -14 355 284 43 0 chr11 72890132 72890294 -75893178 + L1MDb LINE L1 1127 1295 -5114 1603 185 0 15 chr11 72890315 72890580 -75892892 + AluJo SINE Alu 5 265 -47 2346 107 0 0 chr11 72890594 72890892 -75892580 - AluSq SINE Alu -15 298 1 310 236 69 0 chr11 72890909 72890981 -75892491 - L1MCa LINE L1 -4355 2071 1995 1814 161 4 0 chr11 72890983 72891257 -75892215 + AluJb SINE Alu 13 287 -25 809 191 168 16 chr11 72891290 72891416 -75892056 + AluJo SINE Alu 1 106 -196 315 85 0 0 chr11 72891416 72891463 -75892009 + (CA)n Simple_repeat Simple_repeat 2 48 0 809 191 168 16 chr11 72891463 72891592 -75891880 + AluJo SINE Alu 106 295 -7 331 241 42 120 chr11 72892625 72892838 -75890634 + L1MDb LINE L1 1624 1852 -4735 675 195 8 0 chr11 72892838 72892961 -75890511 + AluJo/FLAM SINE Alu 5 128 -174 2244 110 0 0 chr11 72892961 72893261 -75890211 + AluSc SINE Alu 1 300 -9 331 241 42 120 chr11 72893261 72893379 -75890093 + L1MDb LINE L1 1851 1919 -4668 2310 125 3 0 chr11 72893379 72893690 -75889782 + AluSx SINE Alu 1 312 0 331 241 42 120 chr11 72893690 72893780 -75889692 + L1MDb LINE L1 1919 2014 -4573 626 201 8 37 chr11 72893860 72893994 -75889478 + AluJo SINE Alu 7 136 -176 1272 219 43 64 chr11 72895118 72895209 -75888263 + MLT1C LTR MaLR 2 93 -374 2218 112 0 7 chr11 72895209 72895518 -75887954 + AluSx SINE Alu 1 307 0 1272 219 43 64 chr11 72895518 72895634 -75887838 + MLT1C LTR MaLR 93 210 -257 2225 145 0 0 chr11 72895634 72895944 -75887528 + AluSx SINE Alu 1 310 -2 1272 219 43 64 chr11 72895944 72896225 -75887247 + MLT1C LTR MaLR 210 467 0 1963 141 3 3 chr11 72896226 72896539 -75886933 - AluJb SINE Alu 0 313 1 190 242 0 110 chr11 72896900 72896991 -75886481 + MIR SINE MIR 51 131 -131 402 331 38 11 chr11 72897560 72897744 -75885728 + L2 LINE L2 2862 3050 -263 267 278 218 20 chr11 72897944 72898192 -75885280 - L2 LINE L2 -52 3220 2924 1980 160 126 8 chr11 72898220 72898601 -75884871 + MSTA LTR MaLR 3 428 0 2112 136 7 3 chr11 72898616 72898925 -75884547 - AluSx SINE Alu -1 311 2 366 250 192 0 chr11 72899818 72899938 -75883534 + MIR SINE MIR 31 173 -89 2187 139 0 0 chr11 72900300 72900603 -75882869 + AluSx SINE Alu 1 303 -9 1364 219 103 26 chr11 72900943 72901372 -75882100 + MLT1C LTR MaLR 6 467 0 275 306 90 0 chr11 72901761 72901872 -75881600 + L1MC4 LINE L1 7782 7902 -140 2307 89 14 3 chr11 72902016 72902307 -75881165 + AluSg SINE Alu 1 294 -16 199 277 59 109 chr11 72902886 72902970 -75880502 + L2 LINE L2 3200 3278 -35 1670 140 95 110 chr11 72902970 72903305 -75880167 + MSTD LTR MaLR 1 331 -65 2133 134 0 13 chr11 72903305 72903612 -75879860 + AluSx SINE Alu 10 312 0 1670 140 95 110 chr11 72903612 72903675 -75879797 + MSTD LTR MaLR 331 393 -3 199 277 59 109 chr11 72903675 72903709 -75879763 + L2 LINE L2 3278 3312 -1 188 214 18 0 chr11 72903720 72903776 -75879696 + (TGGG)n Simple_repeat Simple_repeat 4 60 0 31 26 0 0 chr11 72904016 72904054 -75879418 + AT_rich Low_complexity Low_complexity 1 38 0 227 197 152 0 chr11 72904114 72904180 -75879292 + L2 LINE L2 3230 3305 -8 2527 64 0 0 chr11 72904222 72904517 -75878955 + AluY SINE Alu 1 295 -16 1522 180 32 44 chr11 72904801 72904974 -75878498 - AluJo SINE Alu 0 312 143 1950 152 7 10 chr11 72904974 72905283 -75878189 - AluSx SINE Alu -4 308 1 1522 180 32 44 chr11 72905283 72905425 -75878047 - AluJo SINE Alu -169 143 1 1929 151 0 26 chr11 72906275 72906579 -75876893 - AluJb SINE Alu -16 296 1 1797 186 93 2 chr11 72906733 72907152 -75876320 + MLT1D LTR MaLR 32 488 -17 199 152 196 0 chr11 72907169 72907215 -75876257 - L2 LINE L2 -1017 2297 2243 2264 108 0 10 chr11 72907857 72908163 -75875309 + AluSx SINE Alu 1 303 -9 2286 93 0 3 chr11 72908631 72908922 -75874550 + AluSg SINE Alu 1 290 -20 2110 139 20 0 chr11 72908931 72909225 -75874247 + AluSx SINE Alu 1 300 -12 2311 125 0 0 chr11 72909339 72909650 -75873822 + AluSx SINE Alu 1 311 -1 35 95 0 0 chr11 72910322 72910427 -75873045 + AT_rich Low_complexity Low_complexity 1 105 0 740 241 55 50 chr11 72913776 72913996 -75869476 - MER58A DNA MER1_type -3 221 1 2081 136 3 13 chr11 72914062 72914363 -75869109 + AluSx SINE Alu 1 298 -14 922 188 209 0 chr11 72915526 72915800 -75867672 - MER33 DNA MER1_type 0 324 1 778 145 30 15 chr11 72917329 72917460 -75866012 - FLAM_C SINE Alu 0 133 1 2146 114 13 7 chr11 72917572 72917870 -75865602 + AluSq SINE Alu 1 300 -13 685 124 107 25 chr11 72917870 72917991 -75865481 + FLAM_C SINE Alu 2 132 -1 1441 221 10 13 chr11 72918000 72918298 -75865174 + AluJo SINE Alu 1 297 -15 431 258 62 4 chr11 72918564 72918701 -75864771 - MLT1F1 LTR MaLR -7 642 437 707 255 49 39 chr11 72918718 72919004 -75864468 - MLT1F1 LTR MaLR -271 296 8 552 251 36 62 chr11 72919063 72919338 -75864134 - L2 LINE L2 -664 2650 2383 1287 160 13 34 chr11 72919346 72919583 -75863889 + AluJo SINE Alu 65 296 -16 22 35 0 0 chr11 72920171 72920200 -75863272 + AT_rich Low_complexity Low_complexity 1 29 0 1831 152 0 24 chr11 72921166 72921462 -75862010 + AluJo SINE Alu 7 295 -17 2422 83 0 13 chr11 72921465 72921778 -75861694 + AluSg SINE Alu 1 309 -1 1920 142 33 16 chr11 72922341 72922644 -75860828 + AluJb SINE Alu 1 308 -4 201 74 0 0 chr11 72922879 72922906 -75860566 + (A)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr11 72923233 72923254 -75860218 + GC_rich Low_complexity Low_complexity 1 21 0 2264 101 3 0 chr11 72923579 72923875 -75859597 - AluSp SINE Alu -16 297 1 296 299 13 13 chr11 72923875 72923952 -75859520 - L2 LINE L2 -10 3262 3186 207 139 0 0 chr11 72924259 72924295 -75859177 - L2 LINE L2 0 3313 3278 2293 109 7 0 chr11 72924366 72924668 -75858804 + AluSx SINE Alu 1 304 -8 1603 167 72 4 chr11 72924672 72924948 -75858524 + AluJo SINE Alu 1 295 -17 2678 46 0 0 chr11 72925155 72925459 -75858013 + AluY SINE Alu 1 304 -7 370 288 102 70 chr11 72925498 72925783 -75857689 - L2 LINE L2 -1 3271 2978 566 39 0 13 chr11 72925858 72925936 -75857536 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 404 235 82 0 chr11 72926141 72926239 -75857233 + MIR SINE MIR 157 262 0 1889 174 10 3 chr11 72926345 72926655 -75856817 + AluJo SINE Alu 1 312 0 274 225 62 12 chr11 72926856 72926936 -75856536 - LTR67 LTR ERVL -48 509 426 339 219 7 82 chr11 72927009 72927155 -75856317 - LTR67 LTR ERVL -422 135 1 2248 127 0 0 chr11 72928175 72928474 -75854998 + AluJb SINE Alu 1 299 -13 1008 149 6 17 chr11 72929574 72929748 -75853724 - AluSc SINE Alu 0 309 138 2314 69 3 23 chr11 72929755 72930058 -75853414 - AluY SINE Alu -14 297 1 230 330 91 41 chr11 72930299 72930496 -75852976 + MIR SINE MIR 45 251 -11 396 254 140 21 chr11 72930616 72930809 -75852663 + MIR SINE MIR 44 259 -3 784 155 16 16 chr11 72931997 72932126 -75851346 - FLAM_A SINE Alu 0 133 5 1903 201 54 58 chr11 72932774 72932948 -75850524 + MER21B LTR ERV1 1 174 -689 2433 87 6 6 chr11 72932948 72933260 -75850212 + AluSx SINE Alu 1 312 0 1903 201 54 58 chr11 72933260 72933568 -75849904 + MER21B LTR ERV1 174 481 -382 827 168 0 0 chr11 72933573 72933692 -75849780 - FLAM_C SINE Alu -24 119 1 1427 163 14 25 chr11 72933692 72933969 -75849503 + MER21B LTR ERV1 461 734 -129 1766 171 20 0 chr11 72934596 72934894 -75848578 - AluJb SINE Alu -8 304 1 252 190 63 101 chr11 72935272 72935351 -75848121 - Tigger6 DNA MER2_type -1 1596 1521 644 192 72 16 chr11 72935380 72935573 -75847899 - Tigger6 DNA MER2_type -46 1551 1348 21 36 0 0 chr11 72935637 72935665 -75847807 + AT_rich Low_complexity Low_complexity 1 28 0 638 196 74 0 chr11 72935665 72935828 -75847644 - MER20B DNA MER1_type -69 714 540 765 255 175 11 chr11 72936310 72936675 -75846797 + L1MC4a LINE L1 5475 5899 -1909 1491 200 27 30 chr11 72936867 72937167 -75846305 + AluJo SINE Alu 1 299 -13 2296 104 3 0 chr11 72937275 72937572 -75845900 - AluSp SINE Alu -15 298 1 21 57 0 0 chr11 72937671 72937706 -75845766 + AT_rich Low_complexity Low_complexity 1 35 0 1411 166 123 11 chr11 72937874 72937987 -75845485 + AluJo SINE Alu 1 100 -212 216 0 0 0 chr11 72937987 72938011 -75845461 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1411 166 123 11 chr11 72938011 72938174 -75845298 + AluJo SINE Alu 100 308 -4 2233 99 7 3 chr11 72938401 72938694 -75844778 - AluSx SINE Alu -18 294 1 1795 169 38 27 chr11 72938893 72939261 -75844211 + L1MB7 LINE L1 5812 6183 -1 2408 87 0 0 chr11 72939611 72939909 -75843563 - AluSc SINE Alu -11 298 1 1987 109 4 0 chr11 72940289 72940555 -75842917 + AluSp SINE Alu 37 303 -10 216 0 0 0 chr11 72941063 72941087 -75842385 + (T)n Simple_repeat Simple_repeat 1 24 0 1944 148 13 10 chr11 72941212 72941517 -75841955 - AluJb SINE Alu -6 306 1 1672 170 0 83 chr11 72941528 72941864 -75841608 - AluJb SINE Alu -4 308 1 311 284 83 9 chr11 72941876 72941985 -75841487 - MER5B DNA MER1_type -45 133 17 284 266 51 0 chr11 72942585 72942664 -75840808 + MIR SINE MIR 152 234 -28 403 298 150 33 chr11 72942690 72943110 -75840362 - L2 LINE L2 -502 2812 2344 1705 160 30 0 chr11 72943137 72943400 -75840072 + AluJb SINE Alu 21 291 -21 378 273 23 83 chr11 72943863 72944079 -75839393 - L1ME4a LINE L1 -51 6070 5868 1900 126 58 36 chr11 72944168 72944533 -75838939 - THE1C LTR MaLR 0 375 3 25 0 0 0 chr11 72944660 72944685 -75838787 + AT_rich Low_complexity Low_complexity 1 25 0 240 86 0 0 chr11 72945040 72945075 -75838397 + (T)n Simple_repeat Simple_repeat 1 35 0 243 0 0 0 chr11 72945280 72945307 -75838165 + (T)n Simple_repeat Simple_repeat 1 27 0 2117 149 5 49 chr11 72945307 72945677 -75837795 - L1MB3 LINE L1 0 6183 5831 2166 130 0 10 chr11 72945677 72945985 -75837487 - AluSq SINE Alu -8 305 1 2117 149 5 49 chr11 72945985 72946024 -75837448 - L1MB3 LINE L1 -352 5831 5792 2180 286 226 11 chr11 72947541 72949012 -75834460 + L2 LINE L2 928 2706 -608 1587 120 67 60 chr11 72950050 72950350 -75833122 - AluJb SINE Alu -10 302 1 1513 204 87 26 chr11 72950615 72950959 -75832513 + MLT1A1 LTR MaLR 1 365 0 405 274 60 97 chr11 72951100 72951440 -75832032 + L1M4c LINE L1 889 1466 -1277 2083 95 3 33 chr11 72951488 72951792 -75831680 - AluSp SINE Alu -18 295 1 315 312 108 11 chr11 72952445 72952795 -75830677 - L1M4b LINE L1 -5618 1241 800 1067 279 231 17 chr11 72952869 72953389 -75830083 - L1M4b LINE L1 -6218 641 11 851 203 85 0 chr11 72953441 72953594 -75829878 + AluJb SINE Alu 137 302 -10 303 102 356 0 chr11 72954838 72954897 -75828575 - MADE1 DNA Mariner 0 80 1 2141 126 0 3 chr11 72955257 72955567 -75827905 + AluSx SINE Alu 1 309 -3 2395 50 0 7 chr11 72957098 72957400 -75826072 + AluY SINE Alu 2 301 -10 4923 89 35 11 chr11 72957690 72958450 -75825022 - L1PA13 LINE L1 0 6163 5385 21 0 0 0 chr11 72958867 72958888 -75824584 + AT_rich Low_complexity Low_complexity 1 21 0 1449 193 20 3 chr11 72959049 72959245 -75824227 - AluJo SINE Alu -7 305 101 1394 218 7 23 chr11 72959245 72959548 -75823924 + AluJb SINE Alu 1 298 -14 1449 193 20 3 chr11 72959548 72959651 -75823821 - AluJo SINE Alu -211 101 1 1526 168 73 0 chr11 72960279 72960553 -75822919 + AluJo SINE Alu 1 294 -18 2287 77 0 10 chr11 72960556 72960853 -75822619 + AluSg SINE Alu 1 294 -16 361 153 0 0 chr11 72960929 72960988 -75822484 + Alu SINE Alu 242 300 -2 2186 125 0 0 chr11 72961102 72961413 -75822059 + AluSx SINE Alu 1 311 -1 35 95 0 0 chr11 72962085 72962190 -75821282 + AT_rich Low_complexity Low_complexity 1 105 0 755 241 55 50 chr11 72965540 72965760 -75817712 - MER58A DNA MER1_type -3 221 1 1970 136 3 13 chr11 72965826 72966128 -75817344 + AluSx SINE Alu 1 299 -13 920 196 216 0 chr11 72967291 72967565 -75815907 - MER33 DNA MER1_type 0 324 1 782 145 30 15 chr11 72969094 72969225 -75814247 - FLAM_C SINE Alu 0 133 1 2041 111 13 7 chr11 72969337 72969635 -75813837 + AluSq SINE Alu 1 300 -13 689 124 107 25 chr11 72969635 72969756 -75813716 + FLAM_C SINE Alu 2 132 -1 1352 218 10 14 chr11 72969769 72970063 -75813409 + AluJo SINE Alu 5 297 -15 469 285 76 0 chr11 72970322 72970466 -75813006 - MLT1F1 LTR MaLR 0 567 413 812 262 48 38 chr11 72970483 72970773 -75812699 - MLT1F1 LTR MaLR -271 296 4 1243 292 171 42 chr11 72970828 72972017 -75811455 - L2 LINE L2 -664 2650 1309 829 188 59 0 chr11 72972368 72972538 -75810934 - L1MA4 LINE L1 -4 6296 6117 252 0 0 0 chr11 72972542 72972570 -75810902 + (T)n Simple_repeat Simple_repeat 1 28 0 333 68 0 0 chr11 72972681 72972725 -75810747 + (A)n Simple_repeat Simple_repeat 1 44 0 263 309 0 0 chr11 72972910 72972978 -75810494 + Charlie8 DNA MER1_type 405 472 -1945 3136 125 28 60 chr11 72973479 72973851 -75809621 + MER4B LTR ERV1 1 348 -262 1923 117 41 3 chr11 72973851 72974141 -75809331 + AluSq SINE Alu 1 301 -12 3136 125 28 60 chr11 72974141 72974368 -75809104 + MER4B LTR ERV1 348 581 -29 293 44 67 0 chr11 72975347 72975392 -75808080 + T-rich Low_complexity Low_complexity 4 51 0 1067 90 0 19 chr11 72975885 72976040 -75807432 - AluSx SINE Alu -16 296 145 2307 64 0 13 chr11 72976060 72976358 -75807114 + AluY SINE Alu 1 294 -17 1081 69 0 14 chr11 72976389 72976534 -75806938 - AluSx SINE Alu -170 143 1 239 139 23 0 chr11 72976582 72976625 -75806847 + Cheshire DNA MER1_type 851 894 -1526 * 310 268 0 0 chr11 72976622 72976693 -75806779 + Cheshire DNA MER1_type 2350 2420 0 2140 97 14 0 chr11 72977424 72977714 -75805758 - AluSx SINE Alu -18 294 1 482 270 24 0 chr11 72978026 72978152 -75805320 - L3 LINE CR1 -84 1493 1365 1157 145 0 0 chr11 72978152 72978331 -75805141 - AluJb SINE Alu 0 312 134 1505 158 56 11 chr11 72978332 72978617 -75804855 - AluJb SINE Alu -14 298 1 1506 167 60 0 chr11 72979705 72979974 -75803498 - AluJb SINE Alu -22 290 6 669 344 82 4 chr11 72981670 72982121 -75801351 - L2 LINE L2 0 3313 2828 1945 141 0 3 chr11 72983110 72983409 -75800063 - AluSq SINE Alu -15 298 1 2256 91 0 3 chr11 72983930 72984238 -75799234 - AluSx SINE Alu -5 307 1 1807 150 7 3 chr11 72984241 72984534 -75798938 - AluJo SINE Alu -18 294 1 1116 279 91 25 chr11 72984882 72985320 -75798152 + MLT1C LTR MaLR 1 467 0 2097 119 0 3 chr11 72986315 72986617 -75796855 - AluSx SINE Alu -11 301 1 190 237 68 0 chr11 72988794 72988853 -75794619 - MIR SINE MIR -133 129 67 344 262 235 16 chr11 72989223 72989406 -75794066 - MIR SINE MIR 0 262 40 180 0 0 0 chr11 72989866 72989886 -75793586 + (TCTG)n Simple_repeat Simple_repeat 1 20 0 186 43 0 0 chr11 72989896 72989919 -75793553 + (CCCTG)n Simple_repeat Simple_repeat 3 25 0 232 296 14 0 chr11 72990658 72990729 -75792743 + L2 LINE L2 3241 3312 -1 737 236 49 52 chr11 72990893 72991198 -75792274 + MLT1J LTR MaLR 108 411 -100 33 66 0 0 chr11 72992147 72992208 -75791264 + AT_rich Low_complexity Low_complexity 1 61 0 207 0 0 0 chr11 72992266 72992289 -75791183 + (T)n Simple_repeat Simple_repeat 1 23 0 1918 130 41 0 chr11 72992429 72992721 -75790751 - AluJb SINE Alu -8 304 1 2280 83 3 3 chr11 72993046 72993346 -75790126 - AluSx SINE Alu -12 300 1 2470 65 0 7 chr11 72995663 72995972 -75787500 + AluY SINE Alu 1 307 -4 1978 113 3 3 chr11 72996579 72996894 -75786578 + AluSx SINE Alu 2 316 0 835 183 42 58 chr11 72997248 72997439 -75786033 + MER58A DNA MER1_type 7 194 -30 1609 164 7 7 chr11 72998286 72998590 -75784882 - AluY SINE Alu -7 304 1 636 265 167 5 chr11 72999422 72999637 -75783835 - MIR SINE MIR -12 250 1 21 0 0 0 chr11 72999772 72999793 -75783679 + AT_rich Low_complexity Low_complexity 1 21 0 1119 185 0 10 chr11 72999894 73000099 -75783373 + AluJo SINE Alu 87 289 -23 2263 91 3 0 chr11 73000979 73001276 -75782196 - AluSq SINE Alu -15 298 1 622 285 102 0 chr11 73001322 73001508 -75781964 - MIR SINE MIR -43 219 15 192 346 78 48 chr11 73001664 73001895 -75781577 + L2 LINE L2 3009 3246 -26 501 191 71 32 chr11 73002148 73002274 -75781198 + MIR SINE MIR 23 153 -109 465 254 0 35 chr11 73002298 73002412 -75781060 - MIR SINE MIR -63 199 90 863 314 54 27 chr11 73002642 73003123 -75780349 - LTR33A LTR ERVL 0 523 30 1747 192 30 31 chr11 73003570 73004130 -75779342 + MLT2A2 LTR ERVL 1 554 0 403 327 18 60 chr11 73004284 73004501 -75778971 - MIR SINE MIR -51 211 4 444 160 96 0 chr11 73004578 73004672 -75778800 - MIR SINE MIR -119 143 41 231 88 0 0 chr11 73004672 73004706 -75778766 + (T)n Simple_repeat Simple_repeat 1 34 0 2195 129 0 0 chr11 73004895 73005206 -75778266 - AluSx SINE Alu 0 312 2 254 253 173 43 chr11 73005388 73005550 -75777922 + Charlie8 DNA MER1_type 89 271 -2146 209 280 226 0 chr11 73005961 73006054 -75777418 - MIR SINE MIR -62 146 33 279 377 14 7 chr11 73006369 73006515 -75776957 + MIR SINE MIR 85 231 -31 31 0 0 0 chr11 73006710 73006741 -75776731 + AT_rich Low_complexity Low_complexity 1 31 0 1377 126 41 29 chr11 73006791 73007037 -75776435 + L1MB5 LINE L1 5926 6174 0 220 273 195 39 chr11 73007187 73007315 -75776157 + MER5A DNA MER1_type 7 154 -35 1576 213 58 25 chr11 73007841 73008203 -75775269 + MLT1A2 LTR MaLR 1 374 0 439 302 0 265 chr11 73009742 73009873 -75773599 + MIR SINE MIR 3 87 -175 3323 131 29 22 chr11 73009873 73010299 -75773173 + MER41C LTR ERV1 1 433 -121 2226 121 0 3 chr11 73010299 73010613 -75772859 - AluSq SINE Alu 0 313 1 3323 131 29 22 chr11 73010613 73010736 -75772736 + MER41C LTR ERV1 433 554 0 439 302 0 265 chr11 73010736 73010845 -75772627 + MIR SINE MIR 87 243 -19 1060 172 10 0 chr11 73011034 73011237 -75772235 + L1PA15 LINE L1 5581 5785 -381 2263 97 0 0 chr11 73011237 73011537 -75771935 + AluSq SINE Alu 1 300 -13 1130 99 28 39 chr11 73011537 73011697 -75771775 + AluSq SINE Alu 134 293 -20 2551 115 31 15 chr11 73011697 73012088 -75771384 + L1PA15 LINE L1 5769 6165 0 1130 99 28 39 chr11 73012088 73012108 -75771364 + AluSq SINE Alu 293 312 -1 444 288 179 5 chr11 73012126 73012310 -75771162 + MIR SINE MIR 28 243 -19 993 112 47 18 chr11 73012327 73012496 -75770976 - AluSp SINE Alu -3 310 137 2354 89 0 0 chr11 73012497 73012801 -75770671 - AluSq SINE Alu -9 304 1 216 22 130 0 chr11 73013288 73013334 -75770138 + (CAGG)n Simple_repeat Simple_repeat 1 52 0 205 125 0 0 chr11 73013389 73013421 -75770051 + MIR SINE MIR 117 148 -114 284 319 0 0 chr11 73013636 73013727 -75769745 - L3 LINE CR1 -80 1497 1407 181 368 26 0 chr11 73013852 73013928 -75769544 + L2 LINE L2 3109 3186 -86 257 204 0 9 chr11 73016186 73016240 -75767232 - MIR SINE MIR -62 146 95 199 320 39 0 chr11 73018067 73018145 -75765327 + MIR SINE MIR 68 148 -114 762 239 17 28 chr11 73018929 73019038 -75764434 + MER45A DNA AcHobo 1 110 -1471 2241 78 0 0 chr11 73019038 73019321 -75764151 + AluSx SINE Alu 1 283 -29 294 73 0 0 chr11 73019321 73019362 -75764110 + (CA)n Simple_repeat Simple_repeat 2 42 0 762 239 17 28 chr11 73019362 73019431 -75764041 + MER45A DNA AcHobo 108 178 0 259 202 174 10 chr11 73020173 73020262 -75763210 - MIR SINE MIR -89 119 21 352 340 93 0 chr11 73020305 73020455 -75763017 + MIR3 SINE MIR 34 197 -11 2164 96 10 0 chr11 73020745 73021037 -75762435 + AluSx SINE Alu 1 295 -17 357 284 139 82 chr11 73021182 73021390 -75762082 + MIR SINE MIR 10 229 -33 834 176 6 30 chr11 73022955 73023120 -75760352 - AluJb SINE Alu -18 294 134 2453 65 0 0 chr11 73024797 73025104 -75758368 - AluY SINE Alu -4 307 1 1279 110 0 0 chr11 73025121 73025294 -75758178 - AluSq SINE Alu -1 312 140 2203 85 0 0 chr11 73025299 73025606 -75757866 - AluSx SINE Alu 0 307 1 187 262 0 0 chr11 73026412 73026454 -75757018 - L2 LINE L2 0 3272 3231 483 206 18 0 chr11 73027860 73028030 -75755442 + GA-rich Low_complexity Low_complexity 2 174 0 476 250 47 0 chr11 73028590 73028718 -75754754 - L2 LINE L2 0 3313 3180 1797 103 26 4 chr11 73028843 73029116 -75754356 + L1MA2 LINE L1 6026 6304 0 546 306 99 9 chr11 73029338 73029661 -75753811 - LTR16C LTR ERVL 0 491 140 200 357 51 0 chr11 73031077 73031175 -75752297 - MIR SINE MIR -55 153 51 298 271 12 24 chr11 73031248 73031333 -75752139 - MIR SINE MIR -62 200 117 235 333 48 0 chr11 73031631 73031736 -75751736 + MIR SINE MIR 37 146 -116 648 303 28 23 chr11 73032846 73033064 -75750408 + MIR SINE MIR 44 262 0 276 333 0 13 chr11 73033243 73033321 -75750151 + MIR SINE MIR 51 127 -81 1921 161 0 3 chr11 73033668 73033973 -75749499 - AluSx SINE Alu -8 304 1 208 139 0 0 chr11 73034017 73034053 -75749419 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 301 292 8 42 chr11 73034166 73034286 -75749186 + MIR SINE MIR 117 232 -30 410 249 102 46 chr11 73035936 73036108 -75747364 + MIR SINE MIR 48 229 -33 197 312 52 0 chr11 73036148 73036225 -75747247 + L2 LINE L2 3198 3278 -35 215 291 139 0 chr11 73037729 73037815 -75745657 - MIR SINE MIR -62 200 103 184 341 24 12 chr11 73038082 73038164 -75745308 + L2 LINE L2 2977 3059 -213 184 229 0 0 chr11 73038284 73038319 -75745153 + L2 LINE L2 3231 3265 -7 228 256 18 80 chr11 73038437 73038568 -75744904 + MIR SINE MIR 36 160 -84 898 57 0 0 chr11 73040021 73040126 -75743346 - U6 snRNA snRNA -2 105 1 205 283 255 9 chr11 73040426 73040532 -75742940 + MIR SINE MIR 56 187 -75 796 227 5 56 chr11 73040622 73040838 -75742634 - MER20 DNA MER1_type -14 205 1 257 294 105 9 chr11 73040896 73041004 -75742468 - MIR SINE MIR -62 146 34 396 0 0 0 chr11 73041135 73041179 -75742293 + (A)n Simple_repeat Simple_repeat 1 44 0 311 206 0 0 chr11 73041188 73041251 -75742221 + AluJ/FRAM SINE Alu 233 295 -7 * 1517 206 93 30 chr11 73041248 73041655 -75741817 - MER99 DNA DNA -195 633 201 1888 149 40 60 chr11 73041665 73041698 -75741774 + L1MB3 LINE L1 5794 5826 -357 2093 127 0 13 chr11 73041698 73042013 -75741459 + AluJb SINE Alu 1 311 -1 1888 149 40 60 chr11 73042013 73042236 -75741236 + L1MB3 LINE L1 5826 6042 -141 2247 100 10 0 chr11 73042236 73042545 -75740927 + AluSp SINE Alu 2 313 0 1888 149 40 60 chr11 73042545 73042684 -75740788 + L1MB3 LINE L1 6042 6182 -1 2014 135 0 0 chr11 73042761 73043079 -75740393 + AluSx SINE Alu 1 312 0 2140 135 0 6 chr11 73043082 73043393 -75740079 + AluSx SINE Alu 1 309 -3 2416 50 0 7 chr11 73044924 73045226 -75738246 + AluY SINE Alu 2 301 -10 4640 89 35 11 chr11 73045516 73046276 -75737196 - L1PA13 LINE L1 0 6163 5385 21 0 0 0 chr11 73046693 73046714 -75736758 + AT_rich Low_complexity Low_complexity 1 21 0 1472 187 23 7 chr11 73046875 73047071 -75736401 - AluJo SINE Alu -7 305 101 1531 196 3 29 chr11 73047071 73047377 -75736095 + AluJb SINE Alu 1 298 -14 1472 187 23 7 chr11 73047377 73047480 -75735992 - AluJo SINE Alu -211 101 1 1562 168 73 0 chr11 73048108 73048382 -75735090 + AluJo SINE Alu 1 294 -18 2300 78 0 10 chr11 73048385 73048681 -75734791 + AluSg SINE Alu 1 293 -17 21 0 0 0 chr11 73048820 73048841 -75734631 + GC_rich Low_complexity Low_complexity 1 21 0 225 366 70 16 chr11 73048964 73049150 -75734322 + MIR SINE MIR 64 259 -3 1991 105 0 54 chr11 73049166 73049476 -75733996 - AluSq SINE Alu -31 282 4 1815 155 9 40 chr11 73049482 73049804 -75733668 - AluJo SINE Alu 0 312 1 347 240 0 77 chr11 73049890 73049994 -75733478 - L2 LINE L2 0 3272 3177 1610 162 67 35 chr11 73050322 73050668 -75732804 - MLT1B LTR MaLR -33 357 1 2514 79 3 0 chr11 73050872 73051176 -75732296 + AluY SINE Alu 1 305 -6 2166 132 0 6 chr11 73051187 73051498 -75731974 + AluSx SINE Alu 1 309 -3 1372 133 15 0 chr11 73051610 73051813 -75731659 + AluSq SINE Alu 98 303 -10 2404 107 0 0 chr11 73051970 73052278 -75731194 - AluSx SINE Alu -4 308 1 2072 141 0 0 chr11 73052475 73052773 -75730699 - AluJo SINE Alu -14 298 1 2170 140 0 0 chr11 73053024 73053331 -75730141 + AluSx SINE Alu 1 307 -5 2150 117 3 3 chr11 73054144 73054435 -75729037 - AluSx SINE Alu -20 292 2 452 207 56 9 chr11 73054448 73054603 -75728869 - L1MA4 LINE L1 -191 6109 5953 386 284 60 2 chr11 73056010 73056147 -75727325 - MLT1F1 LTR MaLR -7 612 437 707 255 49 39 chr11 73056164 73056450 -75727022 - MLT1F1 LTR MaLR -271 296 8 1238 278 176 48 chr11 73056509 73057699 -75725773 - L2 LINE L2 -664 2650 1309 782 188 59 0 chr11 73058050 73058220 -75725252 - L1MA4 LINE L1 -4 6296 6117 234 0 0 0 chr11 73058224 73058250 -75725222 + (T)n Simple_repeat Simple_repeat 1 26 0 26 0 0 0 chr11 73058268 73058294 -75725178 + GC_rich Low_complexity Low_complexity 1 26 0 316 363 20 20 chr11 73059444 73059590 -75723882 - MIR3 SINE MIR -62 146 1 2328 90 10 3 chr11 73059764 73060063 -75723409 - AluSx SINE Alu -11 301 1 388 251 132 109 chr11 73060346 73060635 -75722837 + MLT1J LTR MaLR 100 402 -109 1397 160 131 26 chr11 73060635 73060903 -75722569 - AluJo SINE Alu -16 296 1 388 251 132 109 chr11 73060903 73061016 -75722456 + MLT1J LTR MaLR 402 511 0 1735 183 3 30 chr11 73061120 73061421 -75722051 + AluJb SINE Alu 1 293 -19 457 309 17 6 chr11 73061597 73061775 -75721697 + L1MEd LINE L1 2 181 -5938 335 324 41 21 chr11 73061902 73062047 -75721425 + L1MEd LINE L1 310 457 -5662 1164 132 24 10 chr11 73062296 73062509 -75720963 + L1MB5 LINE L1 5935 6142 -32 273 29 0 0 chr11 73062740 73062774 -75720698 + (TG)n Simple_repeat Simple_repeat 1 34 0 402 295 84 42 chr11 73062814 73063004 -75720468 - L2 LINE L2 -474 2840 2643 584 191 50 37 chr11 73063091 73063288 -75720184 + MER6 DNA MER2_type -65 865 0 385 248 9 9 chr11 73063289 73063394 -75720078 - L1M4 LINE L1 -1778 4368 4264 952 263 89 22 chr11 73063780 73064183 -75719289 - MLT1K LTR MaLR -28 560 131 1259 181 0 5 chr11 73064473 73064678 -75718794 + AluJo SINE Alu 1 204 -108 23 0 0 0 chr11 73064690 73064713 -75718759 + AT_rich Low_complexity Low_complexity 1 23 0 2243 83 0 21 chr11 73064727 73065055 -75718417 - AluY SINE Alu 0 322 1 1274 129 22 0 chr11 73065056 73065234 -75718238 - AluSq SINE Alu -126 187 6 2480 75 7 0 chr11 73065357 73065663 -75717809 - AluY SINE Alu -3 308 1 904 132 0 15 chr11 73065663 73065799 -75717673 - AluJb SINE Alu -177 135 2 761 130 9 0 chr11 73066276 73066391 -75717081 + FAM SINE Alu 20 135 -50 1728 138 26 0 chr11 73066392 73066661 -75716811 - AluJo SINE Alu -32 280 5 1806 119 4 8 chr11 73067335 73067587 -75715885 - AluSx SINE Alu -60 252 2 452 207 56 9 chr11 73067600 73067755 -75715717 - L1MA4 LINE L1 -191 6109 5953 386 284 60 2 chr11 73069161 73069298 -75714174 - MLT1F1 LTR MaLR -7 612 437 707 255 49 39 chr11 73069315 73069601 -75713871 - MLT1F1 LTR MaLR -271 296 8 552 251 36 62 chr11 73069660 73069935 -75713537 - L2 LINE L2 -664 2650 2383 1287 160 13 34 chr11 73069943 73070180 -75713292 + AluJo SINE Alu 65 296 -16 22 35 0 0 chr11 73070768 73070797 -75712675 + AT_rich Low_complexity Low_complexity 1 29 0 1831 152 0 24 chr11 73071763 73072059 -75711413 + AluJo SINE Alu 7 295 -17 2422 83 0 13 chr11 73072062 73072375 -75711097 + AluSg SINE Alu 1 309 -1 1920 142 33 16 chr11 73072938 73073241 -75710231 + AluJb SINE Alu 1 308 -4 180 0 0 0 chr11 73073476 73073496 -75709976 + (A)n Simple_repeat Simple_repeat 1 20 0 1565 242 159 17 chr11 73074074 73074711 -75708761 + L2 LINE L2 1745 2471 -843 2041 129 0 14 chr11 73074716 73074877 -75708595 - AluSx SINE Alu -18 294 137 2380 61 0 49 chr11 73074877 73075204 -75708268 - AluY SINE Alu 0 311 1 2041 129 0 14 chr11 73075204 73075329 -75708143 - AluSx SINE Alu -175 137 12 2135 120 7 3 chr11 73075372 73075671 -75707801 + AluSx SINE Alu 1 300 -12 253 178 0 0 chr11 73075678 73075723 -75707749 + Alu SINE Alu 1 45 -256 * 552 230 171 22 chr11 73075713 73075935 -75707537 - Charlie1 DNA MER1_type -238 2523 2269 1361 244 50 10 chr11 73075973 73076371 -75707101 - Charlie1 DNA MER1_type -600 2161 1748 243 0 0 0 chr11 73076457 73076484 -75706988 + (T)n Simple_repeat Simple_repeat 1 27 0 2142 121 0 10 chr11 73076639 73076944 -75706528 + AluSx SINE Alu 1 302 -10 2071 149 3 0 chr11 73077045 73077354 -75706118 + AluSx SINE Alu 1 310 -2 351 231 0 0 chr11 73077362 73077427 -75706045 - Tigger3(Golem) DNA MER2_type -2964 65 1 306 270 9 18 chr11 73077427 73077538 -75705934 + (TA)n Simple_repeat Simple_repeat 1 110 0 217 230 200 30 chr11 73077730 73077865 -75705607 - MIR SINE MIR -70 192 35 2480 75 7 0 chr11 73077937 73078243 -75705229 - AluY SINE Alu -3 308 1 1062 181 6 0 chr11 73078616 73078793 -75704679 - AluJb SINE Alu -3 309 132 1407 172 0 4 chr11 73078811 73079044 -75704428 + AluSx SINE Alu 1 232 -80 312 325 49 8 chr11 73079320 73079443 -75704029 + MIR SINE MIR 18 145 -117 738 120 0 0 chr11 73079448 73079548 -75703924 + AluS SINE Alu 2 101 -211 3858 192 46 54 chr11 73079550 73080527 -75702945 - LTR5 LTR ERVK 0 969 1 1557 189 43 60 chr11 73080531 73081272 -75702200 + LTR13 LTR ERVK 1 781 -226 2387 104 0 3 chr11 73082019 73082328 -75701144 + AluSx SINE Alu 1 308 -4 2319 87 7 3 chr11 73082993 73083291 -75700181 - AluSc SINE Alu -10 299 1 2175 147 0 0 chr11 73085653 73085959 -75697513 + AluSq SINE Alu 1 306 -7 201 74 0 0 chr11 73086306 73086333 -75697139 + (A)n Simple_repeat Simple_repeat 1 27 0 792 114 8 45 chr11 73086516 73086648 -75696824 + FLAM_C SINE Alu 1 127 -6 659 200 26 32 chr11 73088535 73088608 -75694864 - MIR SINE MIR -1 261 189 1377 185 13 0 chr11 73088608 73088840 -75694632 - MER46A DNA MER2_type -1 235 1 659 200 26 32 chr11 73088840 73088921 -75694551 - MIR SINE MIR -73 189 108 233 338 59 29 chr11 73089143 73089279 -75694193 - L3 LINE CR1 -197 1380 1241 356 303 119 0 chr11 73089340 73089449 -75694023 + MIR SINE MIR 37 158 -104 256 257 66 0 chr11 73089883 73090019 -75693453 + (GGGTG)n Simple_repeat Simple_repeat 4 148 0 804 220 19 0 chr11 73090394 73090553 -75692919 + FAM SINE Alu 2 163 -12 563 141 0 12 chr11 73092099 73092179 -75691293 - AluSg SINE Alu -13 299 220 1520 87 0 0 chr11 73092179 73092364 -75691108 - AluSg SINE Alu -125 185 1 742 281 27 9 chr11 73093649 73093870 -75689602 + MIR SINE MIR 14 238 -24 2600 53 0 3 chr11 73094748 73095047 -75688425 - AluY SINE Alu -13 298 1 2117 108 3 14 chr11 73095396 73095683 -75687789 - AluSx SINE Alu -28 284 1 433 168 9 84 chr11 73096238 73096345 -75687127 - AluJb SINE Alu -3 309 211 895 141 0 8 chr11 73096346 73096474 -75686998 - AluSq/x SINE Alu -186 127 1 1137 198 0 9 chr11 73098384 73098679 -75684793 + MER2 DNA MER2_type 2 345 0 1522 205 3 36 chr11 73098778 73099081 -75684391 - AluJo SINE Alu -14 298 6 912 144 0 7 chr11 73099083 73099222 -75684250 - AluJo SINE Alu -174 138 1 847 113 0 16 chr11 73099964 73100088 -75683384 - FLAM_C SINE Alu -21 122 1 877 278 64 34 chr11 73100262 73100589 -75682883 - L1ME3A LINE L1 0 6170 5834 1901 175 0 10 chr11 73100661 73100975 -75682497 - AluJo SINE Alu -1 311 1 747 163 8 0 chr11 73101054 73101183 -75682289 - FLAM_A SINE Alu -2 131 2 188 33 0 33 chr11 73104000 73104030 -75679442 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 1963 150 0 7 chr11 73105014 73105314 -75678158 + AluJb SINE Alu 1 298 -14 2931 215 95 117 chr11 73105720 73106113 -75677359 - L1M4 LINE L1 -1686 4460 4060 886 145 0 7 chr11 73106113 73106251 -75677221 - FLAM_C SINE Alu -6 137 1 2931 215 95 117 chr11 73106251 73106693 -75676779 - L1M4 LINE L1 -2086 4060 3610 180 0 0 0 chr11 73106693 73106713 -75676759 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 2931 215 95 117 chr11 73106713 73106966 -75676506 - L1M4 LINE L1 -2536 3610 3353 691 200 8 0 chr11 73106966 73107096 -75676376 - FLAM_A SINE Alu -2 131 1 1628 119 9 0 chr11 73107103 73107330 -75676142 - AluSg/x SINE Alu -1 309 81 2931 215 95 117 chr11 73107330 73107547 -75675925 - L1M4 LINE L1 -2799 3347 3127 2192 125 0 3 chr11 73107547 73107850 -75675622 - AluSx SINE Alu -10 302 1 2931 215 95 117 chr11 73107850 73108013 -75675459 - L1M4 LINE L1 -3019 3127 2962 1907 107 4 15 chr11 73108013 73108284 -75675188 + AluSx SINE Alu 5 272 -40 2931 215 95 117 chr11 73108284 73108518 -75674954 - L1M4 LINE L1 -3184 2962 2650 315 332 142 43 chr11 73109256 73109581 -75673891 - L1M4 LINE L1 -3437 2709 2353 2086 75 26 8 chr11 73109682 73109949 -75673523 - AluSg SINE Alu -38 272 1 1401 79 0 0 chr11 73109950 73110140 -75673332 - MER41A LTR ERV1 -364 190 1 484 110 11 33 chr11 73110163 73110254 -75673218 + MER4D LTR ERV1 1 89 -783 * 1484 149 48 11 chr11 73110241 73110254 -75673218 + MER4D LTR ERV1 625 636 -267 2375 112 0 0 chr11 73110254 73110559 -75672913 + AluSg1 SINE Alu 1 305 -4 1484 149 48 11 chr11 73110559 73110814 -75672658 + MER4D LTR ERV1 636 903 0 2204 106 7 7 chr11 73111001 73111303 -75672169 - AluSq SINE Alu -11 302 1 749 174 13 47 chr11 73111312 73111461 -75672011 - FRAM SINE Alu -22 154 11 1856 163 3 10 chr11 73111559 73111865 -75671607 - AluJo SINE Alu -8 304 1 421 211 21 11 chr11 73112142 73112237 -75671235 - MLT1J1 LTR MaLR -112 334 239 865 210 83 21 chr11 73112242 73112670 -75670802 + MLT1D LTR MaLR 1 499 -6 473 289 0 0 chr11 73112704 73112825 -75670647 - MLT1J1 LTR MaLR -276 170 50 624 172 0 16 chr11 73113029 73113157 -75670315 - FLAM_A SINE Alu -4 138 13 216 0 0 0 chr11 73113269 73113293 -75670179 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2138 111 0 0 chr11 73113296 73113576 -75669896 - AluSx SINE Alu -32 280 1 198 0 0 0 chr11 73113581 73113603 -75669869 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 953 142 0 0 chr11 73113603 73113737 -75669735 - AluSq/x SINE Alu -178 134 1 1178 69 0 14 chr11 73114005 73114150 -75669322 - AluSq/x SINE Alu -169 143 1 394 163 50 0 chr11 73114182 73114262 -75669210 + ORSL DNA AcHobo 141 224 -51 * 406 222 194 14 chr11 73114245 73114389 -75669083 + MLT1D LTR MaLR 18 187 -318 1379 139 116 58 chr11 73114477 73114603 -75668869 + AluJo SINE Alu 1 118 -194 2468 68 3 0 chr11 73114603 73114898 -75668574 + AluSp SINE Alu 1 296 -17 1379 139 116 58 chr11 73114898 73115065 -75668407 + AluJo SINE Alu 118 311 -1 626 110 50 0 chr11 73115087 73115187 -75668285 - FLAM_C SINE Alu -15 128 24 257 219 152 19 chr11 73115197 73115302 -75668170 + LTR37A LTR ERV1 140 258 -168 340 280 93 0 chr11 73115425 73115543 -75667929 + MIR SINE MIR 128 256 -6 2370 95 0 0 chr11 73115606 73115900 -75667572 + AluY SINE Alu 1 294 -17 2375 94 0 3 chr11 73115900 73116197 -75667275 + AluSx SINE Alu 1 296 -16 1275 124 0 0 chr11 73116198 73116376 -75667096 + AluY SINE Alu 133 310 -1 1802 153 4 0 chr11 73116391 73116659 -75666813 + AluJo SINE Alu 1 269 -43 1649 194 42 26 chr11 73116663 73117049 -75666423 + L1MB3 LINE L1 5434 5825 -346 717 143 56 16 chr11 73117050 73117176 -75666296 + FRAM SINE Alu 26 156 -20 1140 143 38 14 chr11 73117181 73117390 -75666082 + L1MB3 LINE L1 5835 6048 -135 1789 149 86 35 chr11 73117392 73117439 -75666033 - MSTB1 LTR MaLR -3 429 386 2398 101 0 7 chr11 73117439 73117746 -75665726 - AluSq SINE Alu -8 305 1 1789 149 86 35 chr11 73117746 73118093 -75665379 - MSTB1 LTR MaLR -46 386 15 439 296 0 0 chr11 73118112 73118247 -75665225 + L1MB3 LINE L1 6042 6176 -7 547 273 56 5 chr11 73118319 73118535 -75664937 + MLT1D LTR MaLR 269 495 -10 196 258 91 0 chr11 73118897 73118963 -75664509 + MIR SINE MIR 35 106 -156 2215 76 9 67 chr11 73119091 73119420 -75664052 + AluY SINE Alu 2 311 0 275 256 89 30 chr11 73119422 73119590 -75663882 - L1MC/D LINE L1 -2340 5468 5291 1331 294 184 10 chr11 73119779 73120602 -75662870 - L2 LINE L2 -530 2784 1819 2203 89 14 0 chr11 73120848 73121153 -75662319 + AluSp SINE Alu 1 309 0 1667 138 30 4 chr11 73121975 73122244 -75661228 + AluJo SINE Alu 5 280 -32 712 130 9 0 chr11 73122245 73122360 -75661112 - FAM SINE Alu -50 135 20 2085 138 0 16 chr11 73122836 73122972 -75660500 + AluSx SINE Alu 2 139 -173 2155 126 0 19 chr11 73122972 73123282 -75660190 + AluY SINE Alu 1 304 -7 2085 138 0 16 chr11 73123282 73123456 -75660016 + AluSx SINE Alu 139 307 -5 1099 171 0 11 chr11 73123463 73123639 -75659833 + AluSc SINE Alu 127 300 -9 2139 120 7 7 chr11 73123658 73123950 -75659522 + AluSx SINE Alu 6 297 -15 3764 187 108 27 chr11 73124094 73124970 -75658502 - L1MB7 LINE L1 -9 6175 5175 2351 84 0 29 chr11 73124970 73125278 -75658194 - AluSc SINE Alu -10 299 1 3764 187 108 27 chr11 73125278 73125519 -75657953 - L1MB7 LINE L1 -1009 5175 4955 1057 161 0 0 chr11 73125689 73125844 -75657628 - FRAM SINE Alu -29 147 1 2434 90 3 0 chr11 73126516 73126826 -75656646 + AluSp SINE Alu 1 311 -2 188 286 44 22 chr11 73127759 73127850 -75655622 + MIR3 SINE MIR 102 194 -14 23 78 0 0 chr11 73128301 73128352 -75655120 + AT_rich Low_complexity Low_complexity 1 51 0 1870 163 0 23 chr11 73130162 73130495 -75652977 - AluJo SINE Alu 0 312 1 1688 178 21 3 chr11 73133941 73134228 -75649244 + AluJo SINE Alu 1 292 -20 333 329 31 12 chr11 73135225 73135386 -75648086 - MER58A DNA MER1_type -32 192 29 2592 48 0 0 chr11 73135859 73136152 -75647320 + AluY SINE Alu 1 293 -18 2058 108 4 4 chr11 73138215 73138493 -75644979 - AluSx SINE Alu -4 308 31 238 293 64 29 chr11 73139004 73139144 -75644328 - L1MC/D LINE L1 -1926 5882 5738 234 0 0 0 chr11 73139144 73139170 -75644302 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 559 174 0 28 chr11 73139170 73139279 -75644193 - FLAM_C SINE Alu -21 122 17 2282 110 0 0 chr11 73139287 73139587 -75643885 - AluSx SINE Alu -12 300 1 396 242 68 8 chr11 73139595 73139727 -75643745 - L1MC/D LINE L1 -413 5708 5569 240 203 94 0 chr11 73139833 73139897 -75643575 + Charlie8 DNA MER1_type 40 109 -2308 180 0 0 0 chr11 73140035 73140055 -75643417 + (GCCTG)n Simple_repeat Simple_repeat 2 21 0 2379 102 0 0 chr11 73140563 73140866 -75642606 - AluSc SINE Alu -6 303 1 1566 132 6 49 chr11 73140891 73141216 -75642256 - AluSq SINE Alu -2 311 1 641 172 9 0 chr11 73141255 73141371 -75642101 - FLAM_A SINE Alu -15 118 2 270 274 123 0 chr11 73147817 73147923 -75635549 - Charlie1 DNA MER1_type -3 2758 2640 2296 73 7 33 chr11 73147930 73148230 -75635242 + AluY SINE Alu 1 292 -19 1243 133 0 0 chr11 73148230 73148403 -75635069 + AluSg/x SINE Alu 132 304 -6 280 179 90 0 chr11 73148432 73148510 -75634962 + L1M4 LINE L1 5241 5325 -821 1967 104 52 0 chr11 73148532 73148802 -75634670 + AluSx SINE Alu 1 284 -28 240 100 0 50 chr11 73148902 73148942 -75634530 - MER4A LTR ERV1 -56 608 571 * 1530 117 170 96 chr11 73148938 73149333 -75634139 - MER4A LTR ERV1 -240 424 1 2454 109 0 0 chr11 73149639 73149951 -75633521 - AluSx SINE Alu 0 312 1 746 173 15 15 chr11 73150449 73150582 -75632890 - FLAM_C SINE Alu 0 133 1 2420 82 0 3 chr11 73150605 73150899 -75632573 - AluSc SINE Alu -16 293 1 689 133 31 39 chr11 73150920 73151048 -75632424 - AluJo SINE Alu -177 135 9 297 162 17 191 chr11 73151053 73151226 -75632246 - Charlie1 DNA MER1_type -1088 1673 1531 335 181 345 9 chr11 73152753 73152869 -75630603 - MLT1D LTR MaLR -6 499 345 452 219 39 8 chr11 73152917 73153045 -75630427 - MLT1D LTR MaLR -290 215 84 512 250 54 7 chr11 73153104 73153252 -75630220 - MLT1D-int LTR MaLR 0 1371 1217 483 225 176 27 chr11 73156251 73156471 -75627001 - L1MC3 LINE L1 -1 8040 7687 216 0 0 0 chr11 73158130 73158154 -75625318 + (T)n Simple_repeat Simple_repeat 1 24 0 1996 151 3 0 chr11 73160517 73160816 -75622656 - AluSx SINE Alu -11 301 2 2255 94 16 23 chr11 73161319 73161628 -75621844 - AluSx SINE Alu -5 307 1 2196 123 0 13 chr11 73162052 73162353 -75621119 - AluSx SINE Alu -15 297 1 1009 183 42 54 chr11 73162701 73162853 -75620619 + MER8 DNA MER2_type 2 151 -88 1650 164 16 40 chr11 73162853 73163157 -75620315 - AluJo SINE Alu -15 297 1 1009 183 42 54 chr11 73163157 73163245 -75620227 + MER8 DNA MER2_type 151 239 0 545 189 0 88 chr11 73163308 73163456 -75620016 + MLT1D LTR MaLR 3 137 -368 817 212 48 9 chr11 73163456 73163687 -75619785 + L1M4 LINE L1 4903 5142 -1004 2430 88 3 0 chr11 73163687 73163982 -75619490 + AluSx SINE Alu 1 296 -16 234 0 0 0 chr11 73164082 73164108 -75619364 + (A)n Simple_repeat Simple_repeat 1 26 0 797 126 0 30 chr11 73164110 73164245 -75619227 + FLAM_C SINE Alu 1 131 -2 230 218 26 77 chr11 73164383 73164461 -75619011 - L2 LINE L2 -8 3264 3191 2198 113 0 7 chr11 73164759 73165052 -75618420 - AluSq SINE Alu -20 293 3 2360 73 13 7 chr11 73165059 73165360 -75618112 - AluY SINE Alu -8 303 1 2256 123 0 9 chr11 73165668 73165984 -75617488 + AluSq SINE Alu 1 313 0 301 209 54 62 chr11 73166163 73166292 -75617180 - HAL1 LINE L1 -293 2214 2087 427 251 73 52 chr11 73166328 73166385 -75617087 + L1MC5 LINE L1 7730 7784 -177 2358 77 11 0 chr11 73166385 73166672 -75616800 + AluSg SINE Alu 1 290 -20 189 0 0 0 chr11 73166673 73166694 -75616778 + (CAT)n Simple_repeat Simple_repeat 2 22 0 427 251 73 52 chr11 73166694 73166825 -75616647 + L1MC5 LINE L1 7783 7924 -37 1675 174 31 14 chr11 73166830 73167124 -75616348 + AluJb SINE Alu 2 300 -12 274 288 25 0 chr11 73167297 73167377 -75616095 + HsTC2 DNA Tc2 1 82 -1816 1761 159 0 0 chr11 73167381 73167645 -75615827 + AluJb SINE Alu 33 296 -16 1369 175 32 9 chr11 73167647 73167959 -75615513 + LTR29 LTR ERV1 19 466 -156 1171 94 88 0 chr11 73167959 73168140 -75615332 + MER107 DNA MER1_type 1 197 0 1369 175 32 9 chr11 73168140 73168301 -75615171 + LTR29 LTR ERV1 466 622 0 870 249 46 83 chr11 73168343 73168547 -75614925 + MLT1H1 LTR MaLR 9 194 -361 2125 72 0 4 chr11 73168547 73168811 -75614661 + AluY SINE Alu 1 263 -48 870 249 46 83 chr11 73168811 73168979 -75614493 + MLT1H1 LTR MaLR 194 367 -188 2666 92 0 16 chr11 73169230 73169612 -75613860 - MER41A LTR ERV1 0 554 179 380 238 43 48 chr11 73170342 73170552 -75612920 - L1M4 LINE L1 -3463 2683 2475 211 320 93 0 chr11 73171834 73171909 -75611563 - L2 LINE L2 -246 3026 2945 1946 125 7 28 chr11 73172000 73172330 -75611142 - AluJo SINE Alu 0 324 1 309 320 33 25 chr11 73172456 73172578 -75610894 - MIR SINE MIR -30 232 110 1732 168 34 10 chr11 73172893 73173191 -75610281 + AluJo SINE Alu 1 305 -7 198 0 0 0 chr11 73173982 73174004 -75609468 + (A)n Simple_repeat Simple_repeat 1 22 0 41 0 0 0 chr11 73174134 73174175 -75609297 + AT_rich Low_complexity Low_complexity 1 41 0 1958 160 3 13 chr11 73174482 73174794 -75608678 + AluJb SINE Alu 2 310 -2 2240 122 0 3 chr11 73174966 73175269 -75608203 - AluSq SINE Alu -11 302 1 1064 109 0 0 chr11 73175269 73175406 -75608066 - AluSq/x SINE Alu -176 137 1 2210 106 0 3 chr11 73175769 73176061 -75607411 + AluSx SINE Alu 1 291 -21 996 192 0 6 chr11 73176495 73176672 -75606800 + FRAM SINE Alu 1 175 -1 702 251 18 0 chr11 73177899 73178066 -75605406 + MIR SINE MIR 21 190 -72 1629 140 0 17 chr11 73178214 73178450 -75605022 + AluSx SINE Alu 64 295 -17 746 173 15 15 chr11 73178473 73178606 -75604866 + FLAM_C SINE Alu 1 133 0 1278 98 0 112 chr11 73179104 73179328 -75604144 + AluSx SINE Alu 1 199 -113 396 57 0 19 chr11 73179328 73179381 -75604091 + AluY SINE Alu 65 116 -185 1163 191 18 97 chr11 73179489 73179819 -75603653 + AluSq SINE Alu 1 304 -9 1297 172 134 8 chr11 73179901 73180163 -75603309 - AluSx SINE Alu -16 296 2 2195 86 55 0 chr11 73184504 73184796 -75598676 + AluSc SINE Alu 1 308 -1 1077 145 85 55 chr11 73184962 73185327 -75598145 - SVA Other Other -538 848 473 1338 182 15 8 chr11 73185590 73185854 -75597618 - L1MD3 LINE L1 0 7995 7730 1524 160 28 19 chr11 73185879 73186197 -75597275 - L1MB7 LINE L1 0 6184 5864 2031 139 7 10 chr11 73186217 73186519 -75596953 - AluSx SINE Alu -5 307 7 1616 147 60 10 chr11 73186534 73186848 -75596624 - L1MC1 LINE L1 -13 6320 5991 434 296 59 5 chr11 73186850 73187036 -75596436 + L1ME3 LINE L1 5703 5898 -264 718 177 16 0 chr11 73187696 73187820 -75595652 + FLAM_A SINE Alu 1 126 -7 2162 121 0 0 chr11 73187822 73188123 -75595349 + AluSx SINE Alu 1 301 0 191 301 162 0 chr11 73188194 73188330 -75595142 - MIR SINE MIR -70 192 35 641 212 49 49 chr11 73188661 73188754 -75594718 - MER5A DNA MER1_type -5 184 89 198 0 0 0 chr11 73188754 73188776 -75594696 + (TG)n Simple_repeat Simple_repeat 2 23 0 641 212 49 49 chr11 73188776 73188866 -75594606 - MER5A DNA MER1_type -99 90 1 208 346 84 0 chr11 73189071 73189178 -75594294 + MER5A DNA MER1_type 36 151 -38 2566 215 26 28 chr11 73189371 73189985 -75593487 + L1MB5 LINE L1 5514 6126 -48 319 143 111 0 chr11 73190431 73190494 -75592978 - L2 LINE L2 -49 3264 3195 255 250 31 31 chr11 73190494 73190590 -75592882 + MLT1L LTR MaLR 520 615 0 242 102 119 51 chr11 73191383 73191442 -75592030 + MLT1L LTR MaLR 150 212 -403 379 319 137 23 chr11 73191605 73191792 -75591680 - L1MC4a LINE L1 -1756 6052 5888 2425 94 10 3 chr11 73191792 73192101 -75591371 - AluSq SINE Alu -2 311 1 379 319 137 23 chr11 73192101 73192299 -75591173 - L1MC4a LINE L1 -1920 5888 5623 447 251 132 109 chr11 73192384 73192673 -75590799 + MLT1J LTR MaLR 100 402 -109 1401 160 131 26 chr11 73192673 73192941 -75590531 - AluJo SINE Alu -16 296 1 447 251 132 109 chr11 73192941 73193054 -75590418 + MLT1J LTR MaLR 402 511 0 1740 183 3 30 chr11 73193158 73193459 -75590013 + AluJb SINE Alu 1 293 -19 501 322 53 40 chr11 73193635 73194085 -75589387 + L1MEd LINE L1 2 457 -5662 1071 125 15 30 chr11 73194452 73194652 -75588820 + L1MB5 LINE L1 5946 6142 -32 273 29 0 0 chr11 73194883 73194917 -75588555 + (TG)n Simple_repeat Simple_repeat 1 34 0 363 324 85 17 chr11 73194957 73195133 -75588339 - L2 LINE L2 -474 2840 2653 587 191 50 37 chr11 73195234 73195431 -75588041 + MER6 DNA MER2_type -65 865 0 388 276 0 0 chr11 73195432 73195537 -75587935 - L1M4 LINE L1 -1778 4368 4264 1034 283 79 12 chr11 73195923 73196326 -75587146 - MLT1K LTR MaLR -28 560 131 1266 181 0 5 chr11 73196616 73196821 -75586651 + AluJo SINE Alu 1 204 -108 22 0 0 0 chr11 73196833 73196855 -75586617 + AT_rich Low_complexity Low_complexity 1 22 0 2260 83 0 21 chr11 73196869 73197197 -75586275 - AluY SINE Alu 0 322 1 1278 129 22 0 chr11 73197198 73197376 -75586096 - AluSq SINE Alu -126 187 6 2490 75 7 0 chr11 73197499 73197805 -75585667 - AluY SINE Alu -3 308 1 1819 162 3 37 chr11 73198174 73198370 -75585102 - AluJo SINE Alu -2 310 128 2182 138 0 22 chr11 73198370 73198688 -75584784 + AluSx SINE Alu 1 311 -1 1819 162 3 37 chr11 73198688 73198812 -75584660 - AluJo SINE Alu -184 128 1 3314 115 24 19 chr11 73198920 73199501 -75583971 - L1P LINE L1 -1557 4589 4006 2066 151 0 3 chr11 73199503 73199802 -75583670 - AluJb SINE Alu -14 298 1 909 186 61 148 chr11 73199802 73200179 -75583293 + MLT1F LTR MaLR 172 515 -27 255 378 55 8 chr11 73200234 73200361 -75583111 - MER34 LTR ERV1 -35 507 375 2204 108 3 19 chr11 73200394 73200710 -75582762 - AluSx SINE Alu -1 311 1 244 307 0 11 chr11 73200775 73200863 -75582609 - MER34 LTR ERV1 -194 348 262 1986 144 162 8 chr11 73201135 73201537 -75581935 - MER4C LTR ERV1 0 465 2 5052 101 66 39 chr11 73201816 73202695 -75580777 - SVA Other Other -1 1385 483 413 280 95 75 chr11 73202860 73203200 -75580272 - L2 LINE L2 -210 3062 2716 748 144 0 0 chr11 73203208 73203319 -75580153 + FLAM_C SINE Alu 1 111 -32 316 295 205 5 chr11 73203354 73203564 -75579908 - L2 LINE L2 -591 2723 2472 365 162 67 0 chr11 73203587 73203692 -75579780 - LTR37A LTR ERV1 -21 405 294 1128 148 5 79 chr11 73203695 73203911 -75579561 + AluJo SINE Alu 1 200 -112 1399 163 93 19 chr11 73204054 73204198 -75579274 - AluJo SINE Alu -11 301 169 1898 60 9 73 chr11 73204198 73204513 -75578959 - AluY SINE Alu -16 295 1 1399 163 93 19 chr11 73204513 73204638 -75578834 - AluJo SINE Alu -143 169 12 2104 120 3 0 chr11 73204681 73204981 -75578491 + AluSq SINE Alu 1 301 -12 242 178 0 0 chr11 73204988 73205033 -75578439 + Alu SINE Alu 1 45 -258 * 246 186 214 0 chr11 73205023 73205093 -75578379 - Charlie1 DNA MER1_type -238 2523 2439 2211 77 3 27 chr11 73205248 73205546 -75577926 + AluY SINE Alu 1 291 -20 886 152 0 7 chr11 73205559 73205697 -75577775 + AluSq/x SINE Alu 1 137 -176 1708 115 0 47 chr11 73205700 73206022 -75577450 + AluSx SINE Alu 5 311 -1 224 339 45 9 chr11 73207371 73207483 -75575989 - MIR SINE MIR -57 151 36 1054 146 0 6 chr11 73207506 73207670 -75575802 - AluJo SINE Alu -45 267 105 2074 83 4 4 chr11 73207770 73208048 -75575424 - AluSg SINE Alu -31 279 2 2004 125 3 0 chr11 73208053 73208342 -75575130 - AluSx SINE Alu -22 290 1 462 333 101 24 chr11 73208414 73208711 -75574761 - L2 LINE L2 -705 2609 2290 323 235 12 0 chr11 73209405 73209490 -75573982 - MER67A LTR ERV1 -456 87 2 276 252 59 76 chr11 73211273 73211392 -75572080 + MIR SINE MIR 87 203 -59 224 169 270 11 chr11 73211736 73211825 -75571647 + MIR SINE MIR 65 176 -86 214 191 0 0 chr11 73213455 73213497 -75569975 + T-rich Low_complexity Low_complexity 1 42 0 340 385 39 6 chr11 73220469 73220651 -75562821 + MER5A DNA MER1_type 1 188 -1 2151 108 3 22 chr11 73221250 73221566 -75561906 + AluSx SINE Alu 1 310 -2 454 133 326 0 chr11 73223490 73223588 -75559884 - FRAM SINE Alu -17 159 30 186 256 0 0 chr11 73224055 73224098 -75559374 + L2 LINE L2 3266 3308 -5 200 342 94 8 chr11 73225282 73225399 -75558073 + L2 LINE L2 2625 2751 -563 358 250 65 71 chr11 73225827 73225995 -75557477 + L2 LINE L2 3104 3270 -2 309 363 45 0 chr11 73227782 73227939 -75555533 + MIR SINE MIR 16 179 -83 302 328 115 9 chr11 73228453 73228650 -75554822 + MIR SINE MIR 30 256 -6 895 141 0 15 chr11 73228727 73228862 -75554610 + AluJ SINE Alu 1 133 -169 903 162 0 67 chr11 73229049 73229228 -75554244 + AluJ SINE Alu 120 286 -26 2138 142 119 13 chr11 73229705 73230092 -75553380 + MSTA LTR MaLR 1 428 0 24 32 0 0 chr11 73231033 73231064 -75552408 + GC_rich Low_complexity Low_complexity 1 31 0 207 361 76 17 chr11 73236300 73236419 -75547053 + MIR SINE MIR 20 145 -63 308 330 9 33 chr11 73238358 73238573 -75544899 - AluSq SINE Alu 0 303 94 23 0 0 0 chr11 73238854 73238877 -75544595 + GC_rich Low_complexity Low_complexity 1 23 0 216 0 0 0 chr11 73239039 73239063 -75544409 + (A)n Simple_repeat Simple_repeat 1 24 0 22 80 0 0 chr11 73239099 73239149 -75544323 + AT_rich Low_complexity Low_complexity 1 50 0 1872 81 0 0 chr11 73240026 73240260 -75543212 - AluSx SINE Alu -78 234 1 296 250 42 10 chr11 73240291 73240387 -75543085 + MER58C DNA MER1_type 117 215 0 497 172 74 6 chr11 73244364 73244624 -75538848 - MLT1C LTR MaLR -8 382 65 213 39 0 0 chr11 73250389 73250415 -75533057 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 258 314 9 19 chr11 73252445 73252550 -75530922 + Charlie8 DNA MER1_type 61 164 -2253 1537 201 118 47 chr11 73253917 73254080 -75529392 + MLT1C LTR MaLR 1 151 -316 1732 176 14 0 chr11 73254080 73254370 -75529102 + AluJo SINE Alu 1 294 -18 1537 201 118 47 chr11 73254370 73254629 -75528843 + MLT1C LTR MaLR 151 453 -14 1303 223 130 6 chr11 73255106 73255429 -75528043 + MLT1A1 LTR MaLR 1 363 -2 1656 252 86 36 chr11 73257438 73257573 -75525899 - HAL1 LINE L1 -125 2382 2255 984 249 43 0 chr11 73257573 73257782 -75525690 - MER20 DNA MER1_type 0 219 2 1656 252 86 36 chr11 73257782 73258415 -75525057 - HAL1 LINE L1 -252 2255 1576 1947 290 107 38 chr11 73258422 73260521 -75522951 + L1ME LINE L1 22 2291 -3789 1841 147 14 7 chr11 73260521 73260806 -75522666 - AluJb SINE Alu -25 287 1 547 247 127 57 chr11 73260815 73260987 -75522485 - HAL1 LINE L1 -1233 1274 1115 1362 168 34 64 chr11 73260987 73261285 -75522187 + AluJo SINE Alu 1 289 -23 547 247 127 57 chr11 73261285 73261554 -75521918 - HAL1 LINE L1 -1392 1115 802 5064 174 60 18 chr11 73261570 73262254 -75521218 + L1MC2 LINE L1 4614 5268 -1076 1961 105 0 14 chr11 73262254 73262531 -75520941 + AluSx SINE Alu 1 273 -39 5064 174 60 18 chr11 73262531 73263497 -75519975 + L1MC2 LINE L1 5268 6335 -9 617 190 52 0 chr11 73263728 73263844 -75519628 + AluJb SINE Alu 182 303 -9 284 308 115 39 chr11 73263844 73264078 -75519394 - L1MC5 LINE L1 -275 7686 7435 254 256 35 100 chr11 73264230 73264372 -75519100 - L1MC4 LINE L1 -724 7237 7087 1827 149 17 3 chr11 73264372 73264668 -75518804 - AluJo SINE Alu -12 300 1 254 256 35 100 chr11 73264668 73264834 -75518638 - L1MC4 LINE L1 -874 7087 6981 2138 93 24 0 chr11 73264834 73265125 -75518347 + AluSp SINE Alu 1 298 -15 254 256 35 100 chr11 73265125 73265198 -75518274 - L1MC4 LINE L1 -980 6981 6905 225 0 0 0 chr11 73266698 73266723 -75516749 + (T)n Simple_repeat Simple_repeat 1 25 0 974 135 0 0 chr11 73266882 73267015 -75516457 - FLAM_C SINE Alu 0 133 1 2552 206 70 7 chr11 73267024 73267597 -75515875 - L1MC3 LINE L1 -2 7783 7175 331 247 0 0 chr11 73267600 73267673 -75515799 - MLT1F1 LTR MaLR -460 107 35 788 220 92 25 chr11 73267687 73267992 -75515480 - L1MC3 LINE L1 -717 7068 6724 312 217 0 0 chr11 73268592 73268684 -75514788 + (TG)n Simple_repeat Simple_repeat 1 92 0 313 373 61 3 chr11 73268693 73269004 -75514468 - L1MC3 LINE L1 -1870 5938 5610 356 329 20 7 chr11 73270995 73271141 -75512331 - MIR SINE MIR -2 260 113 2120 337 35 25 chr11 73271163 73272233 -75511239 + ERVL LTR ERVL 2282 3362 -2402 3432 200 53 9 chr11 73272967 73273723 -75509749 + MER49 LTR ERV1 135 923 0 424 303 46 11 chr11 73276218 73276393 -75507079 - MIR SINE MIR -70 192 12 1774 214 72 2 chr11 73276522 73276923 -75506549 - L1MB5 LINE L1 -8 6166 5738 2965 166 39 22 chr11 73276929 73277204 -75506268 + L1MB3 LINE L1 5541 5810 -373 1578 167 3 64 chr11 73277204 73277533 -75505939 + AluJo SINE Alu 1 309 -3 2965 166 39 22 chr11 73277533 73277848 -75505624 + L1MB3 LINE L1 5810 6141 -42 1543 119 99 65 chr11 73277853 73278146 -75505326 + AluSx SINE Alu 3 305 -7 1895 128 0 0 chr11 73278269 73278543 -75504929 - AluSx SINE Alu -4 308 35 827 150 0 8 chr11 73278580 73278707 -75504765 - FLAM_C SINE Alu -5 128 3 351 0 0 0 chr11 73278835 73278874 -75504598 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 274 288 200 0 chr11 73278878 73279003 -75504469 - L2 LINE L2 -9 3304 3155 542 272 31 6 chr11 73280135 73280297 -75503175 + MIR SINE MIR 11 176 -86 2130 105 0 3 chr11 73280712 73281006 -75502466 - AluSx SINE Alu -19 293 1 263 245 0 78 chr11 73281007 73281109 -75502363 - L1MC2 LINE L1 -14 6330 6237 * 335 301 25 25 chr11 73281096 73281259 -75502213 - L1MC2 LINE L1 -1876 5932 5770 2045 117 0 0 chr11 73281552 73281858 -75501614 - AluSx SINE Alu 0 306 1 573 216 140 26 chr11 73281914 73282178 -75501294 + L1M4 LINE L1 4327 4620 -1526 180 152 0 0 chr11 73282247 73282280 -75501192 + A-rich Low_complexity Low_complexity 1 33 0 2035 98 3 52 chr11 73282983 73283311 -75500161 - AluSx SINE Alu 0 312 1 189 107 0 0 chr11 73283480 73283508 -75499964 + (T)n Simple_repeat Simple_repeat 1 28 0 2064 124 0 31 chr11 73283613 73283986 -75499486 - AluSx SINE Alu 0 363 1 14389 122 16 50 chr11 73284181 73284864 -75498608 - Tigger1 DNA MER2_type 0 2418 1713 2173 59 0 31 chr11 73284864 73285176 -75498296 - AluY SINE Alu 0 303 1 14389 122 16 50 chr11 73285176 73285931 -75497541 - Tigger1 DNA MER2_type -705 1713 934 2200 68 3 7 chr11 73285931 73286223 -75497249 + AluY SINE Alu 1 291 -20 14389 122 16 50 chr11 73286223 73287180 -75496292 - Tigger1 DNA MER2_type -1484 934 107 1022 149 6 18 chr11 73287180 73287348 -75496124 + FRAM SINE Alu 1 166 0 14389 122 16 50 chr11 73287348 73287451 -75496021 - Tigger1 DNA MER2_type -2311 107 2 183 316 18 0 chr11 73288995 73289052 -75494420 + L2 LINE L2 3153 3210 -62 228 86 0 0 chr11 73290100 73290135 -75493337 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 1645 141 3 58 chr11 73290860 73291173 -75492299 + AluSx SINE Alu 1 296 -16 206 273 83 91 chr11 73291975 73292008 -75491464 + MIR SINE MIR 22 54 -154 2246 68 0 10 chr11 73292008 73292302 -75491170 + AluY SINE Alu 16 306 -5 206 273 83 91 chr11 73292302 73292389 -75491083 + MIR SINE MIR 54 141 -67 1528 202 43 3 chr11 73293405 73293752 -75489720 + MLT1B LTR MaLR 30 390 0 1726 202 113 5 chr11 73295310 73295745 -75487727 + MLT1D LTR MaLR 1 482 -23 2024 115 0 0 chr11 73297049 73297327 -75486145 + AluSx SINE Alu 1 278 -34 252 0 0 0 chr11 73297327 73297355 -75486117 + (CAAT)n Simple_repeat Simple_repeat 4 31 0 220 319 28 85 chr11 73297412 73297553 -75485919 + MIR3 SINE MIR 14 146 -62 289 282 88 72 chr11 73298401 73298582 -75484890 - MER5B DNA MER1_type -5 173 1 290 300 80 20 chr11 73299380 73299630 -75483842 + L2 LINE L2 2656 2920 -394 2198 211 68 13 chr11 73299945 73300472 -75483000 + MER74A LTR ERVL 3 558 0 781 172 60 0 chr11 73301316 73301450 -75482022 + FRAM SINE Alu 21 162 -14 324 70 0 0 chr11 73301453 73301496 -75481976 + (GA)n Simple_repeat Simple_repeat 2 44 0 842 173 38 109 chr11 73301498 73301756 -75481716 + L1MC1 LINE L1 5656 5899 -434 5782 143 24 13 chr11 73301756 73302127 -75481345 - Tigger1 DNA MER2_type -1435 983 617 1411 168 84 14 chr11 73302127 73302412 -75481060 - AluJo SINE Alu -7 305 1 5782 143 24 13 chr11 73302412 73303013 -75480459 - Tigger1 DNA MER2_type -1801 617 1 21 36 0 0 chr11 73303013 73303041 -75480431 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr11 73303162 73303194 -75480278 + AT_rich Low_complexity Low_complexity 1 32 0 203 175 0 0 chr11 73303225 73303265 -75480207 + T-rich Low_complexity Low_complexity 1 40 0 810 189 60 17 chr11 73303374 73303456 -75480016 + L1M4 LINE L1 4654 4731 -1415 2119 103 20 3 chr11 73303456 73303757 -75479715 - AluSx SINE Alu -6 306 1 810 189 60 17 chr11 73303757 73303907 -75479565 + L1M4 LINE L1 4731 4896 -1250 1408 155 5 0 chr11 73303989 73304208 -75479264 - AluJb SINE Alu -17 295 76 2657 260 57 58 chr11 73304264 73304356 -75479116 - L1MEc LINE L1 -2935 3709 3618 1518 195 3 32 chr11 73304356 73304664 -75478808 - AluJo SINE Alu -13 299 1 2657 260 57 58 chr11 73304664 73305700 -75477772 - L1MEc LINE L1 -3026 3618 2582 2175 107 3 0 chr11 73305700 73305998 -75477474 - AluSc SINE Alu -10 299 1 2657 260 57 58 chr11 73305998 73306369 -75477103 - L1MEc LINE L1 -4062 2582 2212 1787 94 4 0 chr11 73306369 73306604 -75476868 - AluSp SINE Alu -14 299 64 2657 260 57 58 chr11 73306604 73307136 -75476336 - L1MEc LINE L1 -4432 2212 1681 2286 105 0 6 chr11 73307136 73307450 -75476022 - AluSx SINE Alu 0 312 1 2657 260 57 58 chr11 73307450 73308106 -75475366 - L1MEc LINE L1 -4963 1681 1036 315 0 0 0 chr11 73308106 73308141 -75475331 + (TCCA)n Simple_repeat Simple_repeat 4 38 0 2170 98 0 10 chr11 73308141 73308436 -75475036 - AluSg SINE Alu -18 292 1 781 280 25 8 chr11 73308462 73308701 -75474771 - L1MEc LINE L1 -6117 708 466 27 0 0 0 chr11 73308717 73308744 -75474728 + AT_rich Low_complexity Low_complexity 1 27 0 2326 133 30 25 chr11 73308799 73309161 -75474311 - THE1B LTR MaLR 0 364 1 1807 196 47 29 chr11 73310059 73310236 -75473236 + MLT1B LTR MaLR 1 173 -217 1872 130 13 7 chr11 73310236 73310536 -75472936 + AluSg1 SINE Alu 1 302 -7 1807 196 47 29 chr11 73310536 73310741 -75472731 + MLT1B LTR MaLR 173 390 0 467 253 70 21 chr11 73312509 73312695 -75470777 + MLT1K LTR MaLR 141 335 -253 204 120 13 53 chr11 73312787 73312862 -75470610 + (CAGAGA)n Simple_repeat Simple_repeat 4 75 0 234 313 12 12 chr11 73312942 73313022 -75470450 + MER116 DNA Mariner 1 80 0 2151 236 56 0 chr11 73314055 73314631 -75468841 + L1MB5 LINE L1 5539 6146 -28 878 142 0 0 chr11 73314658 73314785 -75468687 - FLAM_C SINE Alu -4 129 3 1224 229 118 0 chr11 73315031 73315380 -75468092 - L1MB5 LINE L1 0 6174 5785 223 291 150 14 chr11 73315465 73315495 -75467977 - MIR3 SINE MIR -30 232 207 2993 82 0 3 chr11 73315495 73315871 -75467601 - THE1C LTR MaLR 0 375 1 223 291 150 14 chr11 73315871 73316031 -75467441 - MIR3 SINE MIR -55 207 2 393 161 52 7 chr11 73316627 73316782 -75466690 + (TCCA)n Simple_repeat Simple_repeat 3 164 0 706 160 30 0 chr11 73316793 73316962 -75466510 + (TCCA)n Simple_repeat Simple_repeat 3 176 0 549 289 6 0 chr11 73318084 73318240 -75465232 - L1MB7 LINE L1 -243 5941 5785 773 285 135 5 chr11 73318673 73319080 -75464392 + MLT1D LTR MaLR 20 479 -26 205 195 0 81 chr11 73320880 73320967 -75462505 + (CTCA)n Simple_repeat Simple_repeat 1 80 0 1566 232 53 2 chr11 73321163 73321599 -75461873 - MLT1C LTR MaLR -8 459 2 1174 75 176 5 chr11 73322071 73322259 -75461213 + AluSq SINE Alu 85 304 -9 1056 232 26 46 chr11 73322321 73322666 -75460806 - L1MB3 LINE L1 -118 6065 5728 980 230 38 9 chr11 73323040 73323253 -75460219 + MER20 DNA MER1_type 1 219 0 967 237 164 18 chr11 73323523 73323920 -75459552 + MLT1D LTR MaLR 3 457 -48 3704 189 59 15 chr11 73324600 73325419 -75458053 + MER21B LTR ERV1 8 862 -1 333 186 35 47 chr11 73325649 73325735 -75457737 + MIR SINE MIR 108 192 -70 1468 273 111 31 chr11 73327077 73327498 -75455974 - MER21B LTR ERV1 -107 756 259 884 144 0 8 chr11 73327498 73327630 -75455842 - FLAM_C SINE Alu 0 133 3 1468 273 111 31 chr11 73327630 73327886 -75455586 - MER21B LTR ERV1 -604 259 25 1090 205 179 29 chr11 73328270 73328650 -75454822 + MER31A LTR ERV1 1 437 -48 2016 134 0 0 chr11 73328665 73328955 -75454517 - AluSx SINE Alu -22 290 1 1261 238 63 34 chr11 73330064 73330510 -75452962 + MLT1C LTR MaLR 1 459 -8 180 0 0 0 chr11 73332992 73333012 -75450460 + (TTCC)n Simple_repeat Simple_repeat 1 20 0 2316 80 3 0 chr11 73333367 73333666 -75449806 - AluSx SINE Alu -12 300 1 441 250 142 19 chr11 73333929 73334141 -75449331 + MLT1C LTR MaLR 230 467 0 270 267 24 78 chr11 73335162 73335313 -75448159 + MIR SINE MIR 37 177 -31 286 162 81 68 chr11 73335476 73335550 -75447922 - MIR SINE MIR -71 191 117 1163 187 134 89 chr11 73335592 73335950 -75447522 - MLT1A2 LTR MaLR 0 374 1 657 213 19 6 chr11 73336347 73336507 -75446965 + MLT1A2 LTR MaLR 1 162 -212 1530 270 56 17 chr11 73336918 73337399 -75446073 + MLT1D LTR MaLR 2 501 -4 2110 119 13 0 chr11 73338246 73338548 -75444924 - AluSq SINE Alu -7 306 1 1837 32 0 0 chr11 73338562 73338779 -75444693 - L1PA4 LINE L1 0 6155 5939 317 210 11 11 chr11 73339234 73339410 -75444062 + (CA)n Simple_repeat Simple_repeat 2 177 0 356 224 6 0 chr11 73339447 73339617 -75443855 + (CA)n Simple_repeat Simple_repeat 1 171 0 241 257 0 14 chr11 73340360 73340430 -75443042 + MER116 DNA Mariner 1 69 -11 2465 202 47 0 chr11 73340827 73341278 -75442194 - MER70A LTR ERVL 0 472 1 1765 193 52 71 chr11 73341914 73341953 -75441519 - MLT1C LTR MaLR 0 467 429 1951 133 3 10 chr11 73341953 73342253 -75441219 + AluSx SINE Alu 1 298 -14 1765 193 52 71 chr11 73342253 73342501 -75440971 - MLT1C LTR MaLR -38 429 190 2203 125 0 0 chr11 73342501 73342805 -75440667 + AluSx SINE Alu 1 304 -8 1765 193 52 71 chr11 73342805 73342992 -75440480 - MLT1C LTR MaLR -277 190 1 2387 80 0 13 chr11 73343064 73343378 -75440094 + AluY SINE Alu 1 310 -1 499 364 23 18 chr11 73343389 73343782 -75439690 + L1ME3A LINE L1 5558 5952 -218 248 260 0 0 chr11 73344092 73344142 -75439330 + (TATG)n Simple_repeat Simple_repeat 3 52 0 1405 218 50 28 chr11 73346243 73346642 -75436830 - L1MB5 LINE L1 0 6174 5767 198 153 53 38 chr11 73346645 73346776 -75436696 + (CATATA)n Simple_repeat Simple_repeat 2 134 0 479 277 138 24 chr11 73346808 73347061 -75436411 - L1MB5 LINE L1 -322 5852 5571 340 238 31 28 chr11 73347927 73348038 -75435434 - MIR SINE MIR -62 146 31 595 200 117 8 chr11 73348194 73348314 -75435158 + FLAM_C SINE Alu 1 133 0 247 213 147 13 chr11 73348434 73348509 -75434963 + MIR SINE MIR 60 144 -118 243 0 0 0 chr11 73349933 73349960 -75433512 + (T)n Simple_repeat Simple_repeat 1 27 0 204 188 0 0 chr11 73350238 73350270 -75433202 + G-rich Low_complexity Low_complexity 1 32 0 189 0 0 0 chr11 73350390 73350411 -75433061 + (A)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr11 73350570 73350592 -75432880 + AT_rich Low_complexity Low_complexity 1 22 0 947 235 163 0 chr11 73350624 73350888 -75432584 - AluSx SINE Alu -2 310 4 347 274 9 44 chr11 73352326 73352439 -75431033 + MIR SINE MIR 103 211 -51 302 235 15 0 chr11 73353529 73353597 -75429875 + MIR SINE MIR 59 127 -135 381 356 36 37 chr11 73354030 73354292 -75429180 - L1ME3A LINE L1 -134 6028 5764 271 222 83 0 chr11 73354452 73354524 -75428948 - MER46C DNA MER2_type -139 199 122 2099 187 81 0 chr11 73354829 73355225 -75428247 - MSTA LTR MaLR 0 428 1 635 276 58 65 chr11 73355304 73355512 -75427960 - L1MB5 LINE L1 -698 5472 5264 1946 118 3 11 chr11 73355512 73355647 -75427825 + AluSx SINE Alu 1 135 -177 2145 117 3 0 chr11 73355647 73355945 -75427527 + AluSc SINE Alu 1 299 -10 1946 118 3 11 chr11 73355945 73356096 -75427376 + AluSx SINE Alu 135 285 -27 635 276 58 65 chr11 73356096 73356481 -75426991 - L1MB5 LINE L1 -906 5264 4885 381 131 0 0 chr11 73356683 73356744 -75426728 + (T)n Simple_repeat Simple_repeat 1 61 0 272 281 25 33 chr11 73358205 73358270 -75425202 + GA-rich Low_complexity Low_complexity 4 69 -54 1155 245 52 57 chr11 73358270 73358569 -75424903 + MLT1A1 LTR MaLR 1 299 -66 2130 101 0 0 chr11 73358569 73358855 -75424617 - AluSx SINE Alu -26 286 1 1155 245 52 57 chr11 73358855 73358922 -75424550 + MLT1A1 LTR MaLR 299 365 0 272 281 25 33 chr11 73358922 73358977 -75424495 + GA-rich Low_complexity Low_complexity 69 123 0 1338 315 64 16 chr11 73359011 73359573 -75423899 + L1ME1 LINE L1 5346 5934 -232 180 77 0 0 chr11 73359789 73359815 -75423657 + (A)n Simple_repeat Simple_repeat 1 26 0 1828 128 3 52 chr11 73359971 73360299 -75423173 + AluSx SINE Alu 1 312 0 258 247 82 0 chr11 73362079 73362152 -75421320 - L2 LINE L2 0 3272 3194 465 200 0 0 chr11 73362289 73362379 -75421093 + MER93a LTR ERV1 311 400 -2 390 295 22 14 chr11 73362381 73362520 -75420952 + L1MB5 LINE L1 5744 5883 -301 921 223 5 35 chr11 73362548 73362750 -75420722 + MER8 DNA MER2_type 8 203 -36 693 245 30 15 chr11 73362771 73362971 -75420501 + L1MB5 LINE L1 5922 6124 -50 23 0 0 0 chr11 73363616 73363639 -75419833 + AT_rich Low_complexity Low_complexity 1 23 0 1118 254 78 24 chr11 73364056 73364430 -75419042 + MLT1C LTR MaLR 59 452 -15 2132 108 0 0 chr11 73365830 73366116 -75417356 + AluSx SINE Alu 1 286 -26 180 0 0 0 chr11 73366116 73366136 -75417336 + (CCAA)n Simple_repeat Simple_repeat 1 20 0 995 311 64 23 chr11 73366596 73367172 -75416300 + L1M4 LINE L1 3418 4017 -2129 24 53 0 0 chr11 73367428 73367466 -75416006 + AT_rich Low_complexity Low_complexity 1 38 0 1326 208 68 22 chr11 73367482 73367893 -75415579 + L1MC2 LINE L1 5915 6343 -1 191 286 71 31 chr11 73368653 73368751 -75414721 - MIR SINE MIR -90 118 17 1519 158 100 51 chr11 73368853 73368959 -75414513 + MLT1B LTR MaLR 9 108 -257 2047 99 14 10 chr11 73368959 73369253 -75414219 + AluSx SINE Alu 1 295 -17 1519 158 100 51 chr11 73369253 73369505 -75413967 + MLT1B LTR MaLR 108 358 -7 2502 48 0 10 chr11 73370438 73370751 -75412721 - AluY SINE Alu -1 310 1 1008 190 28 36 chr11 73370946 73371199 -75412273 - L1MA4 LINE L1 -4 6296 6046 331 300 18 9 chr11 73372444 73372554 -75410918 - MLT1J1 LTR MaLR -296 150 40 2258 84 10 7 chr11 73372642 73372950 -75410522 + AluY SINE Alu 3 311 0 37 0 0 0 chr11 73372959 73372996 -75410476 + AT_rich Low_complexity Low_complexity 1 37 0 431 337 130 32 chr11 73373463 73373587 -75409885 + L1ME4a LINE L1 5547 5658 -463 1471 197 0 3 chr11 73373587 73373882 -75409590 + AluSx SINE Alu 17 310 -2 431 337 130 32 chr11 73373882 73374158 -75409314 + L1ME4a LINE L1 5658 5986 -135 1283 105 0 6 chr11 73374706 73374878 -75408594 + AluSx SINE Alu 1 171 -141 360 328 74 0 chr11 73375157 73375279 -75408193 - L1M4 LINE L1 -1278 4868 4738 1234 214 24 7 chr11 73375280 73375574 -75407898 + AluSx SINE Alu 1 299 -13 754 218 96 21 chr11 73376016 73376204 -75407268 - MER3 DNA MER1_type -7 202 1 180 0 0 0 chr11 73376914 73376934 -75406538 + (A)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr11 73377642 73377664 -75405808 + AT_rich Low_complexity Low_complexity 1 22 0 352 266 46 44 chr11 73377922 73378233 -75405239 + L1M4 LINE L1 4045 4433 -1713 2544 35 7 3 chr11 73378291 73378601 -75404871 + AluY SINE Alu 1 311 0 180 0 0 0 chr11 73378608 73378628 -75404844 + (G)n Simple_repeat Simple_repeat 1 20 0 225 0 0 0 chr11 73378752 73378777 -75404695 + (A)n Simple_repeat Simple_repeat 1 25 0 441 0 0 0 chr11 73378807 73378856 -75404616 + (A)n Simple_repeat Simple_repeat 1 49 0 423 0 0 0 chr11 73378883 73378930 -75404542 + (T)n Simple_repeat Simple_repeat 1 47 0 387 0 0 0 chr11 73378962 73379005 -75404467 + (C)n Simple_repeat Simple_repeat 1 43 0 1564 101 5 0 chr11 73379557 73379766 -75403706 - AluSp SINE Alu -40 273 64 526 282 34 54 chr11 73379766 73380237 -75403235 - L1MCa LINE L1 -4654 1953 1301 441 323 62 24 chr11 73380237 73380295 -75403177 - AluSq SINE Alu 0 313 259 180 0 0 0 chr11 73380295 73380315 -75403157 + (G)n Simple_repeat Simple_repeat 1 20 0 441 323 62 24 chr11 73380315 73380547 -75402925 - AluSq SINE Alu -54 259 12 754 218 96 21 chr11 73381172 73381360 -75402112 - MER3 DNA MER1_type -7 202 1 535 236 68 6 chr11 73382178 73382339 -75401133 + MER20 DNA MER1_type 33 203 -16 1744 257 55 69 chr11 73382505 73383137 -75400335 - MER77 LTR ERV1 -6 599 25 195 118 59 0 chr11 73383141 73383175 -75400297 - MIR SINE MIR -60 148 113 234 62 0 0 chr11 73383344 73383376 -75400096 + (A)n Simple_repeat Simple_repeat 1 32 0 815 324 71 21 chr11 73384683 73385063 -75398409 + MLT1I LTR MaLR 11 409 0 1666 140 56 59 chr11 73385081 73385437 -75398035 - MER46B DNA MER2_type -6 230 1 1972 95 0 0 chr11 73385494 73385756 -75397716 - AluSx SINE Alu -11 301 40 184 329 55 14 chr11 73386045 73386118 -75397354 - MIR SINE MIR -70 192 117 225 186 0 0 chr11 73387318 73387361 -75396111 + MIR SINE MIR 111 153 -55 1452 223 107 17 chr11 73387999 73388421 -75395051 + MLT1C LTR MaLR 8 467 0 372 22 0 0 chr11 73388911 73388956 -75394516 + (CA)n Simple_repeat Simple_repeat 2 46 0 2103 38 8 15 chr11 73389664 73389926 -75393546 - AluY SINE Alu -13 298 39 192 184 61 0 chr11 73390656 73390754 -75392718 + (TA)n Simple_repeat Simple_repeat 2 105 0 314 266 83 9 chr11 73390761 73390870 -75392602 - L1MC4 LINE L1 -1337 6705 6589 319 307 22 53 chr11 73390952 73391177 -75392295 + L1MC5 LINE L1 6955 7172 -789 4494 190 26 33 chr11 73391838 73392118 -75391354 + L1MB3 LINE L1 5041 5321 -862 2099 123 0 0 chr11 73392118 73392419 -75391053 + AluSx SINE Alu 1 301 -11 4494 190 26 33 chr11 73392419 73393270 -75390202 + L1MB3 LINE L1 5321 6176 -7 181 306 124 16 chr11 73393477 73393670 -75389802 + L2 LINE L2 2856 3069 -244 304 289 0 15 chr11 73393755 73394030 -75389442 + (TG)n Simple_repeat Simple_repeat 1 271 0 249 267 0 0 chr11 73394056 73394172 -75389300 + (TG)n Simple_repeat Simple_repeat 1 116 0 474 343 0 0 chr11 73394259 73394434 -75389038 + (TG)n Simple_repeat Simple_repeat 2 176 0 502 223 49 8 chr11 73394437 73394564 -75388908 - MLT1B LTR MaLR -7 383 272 267 247 0 0 chr11 73394585 73394674 -75388798 + (TG)n Simple_repeat Simple_repeat 2 90 0 2208 85 33 7 chr11 73396232 73396537 -75386935 + AluSq SINE Alu 1 313 0 1452 200 108 9 chr11 73396772 73397097 -75386375 - MLT1A1 LTR MaLR -8 357 1 1400 228 117 43 chr11 73397605 73398075 -75385397 + MLT1D LTR MaLR 1 505 0 256 325 13 0 chr11 73398251 73398328 -75385144 + MIR3 SINE MIR 81 158 -50 2241 94 10 3 chr11 73398591 73398898 -75384574 - AluY SINE Alu 0 311 3 331 300 18 9 chr11 73398986 73399096 -75384376 + MLT1J1 LTR MaLR 40 150 -296 1008 190 28 36 chr11 73400341 73400594 -75382878 + L1MA4 LINE L1 6046 6296 -4 2464 54 0 10 chr11 73400789 73401102 -75382370 + AluY SINE Alu 1 310 -1 282 318 103 15 chr11 73401241 73401436 -75382036 - L2 LINE L2 -24 3289 3078 1409 132 57 34 chr11 73401671 73401936 -75381536 - L1MB3 LINE L1 -7 6176 5906 1999 107 47 3 chr11 73402447 73402745 -75380727 + AluSx SINE Alu 1 311 -1 182 61 0 30 chr11 73402911 73402944 -75380528 + (CAAAAA)n Simple_repeat Simple_repeat 5 36 0 319 326 165 26 chr11 73403339 73403569 -75379903 + MIR SINE MIR 1 262 0 456 0 0 18 chr11 73404328 73404384 -75379088 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 2019 93 3 17 chr11 73404384 73404673 -75378799 - AluSq SINE Alu -28 285 1 378 335 81 12 chr11 73404963 73405136 -75378336 + MIR SINE MIR 60 244 -18 1558 222 91 0 chr11 73405374 73405779 -75377693 + L1MB7 LINE L1 5583 6024 -160 265 135 0 0 chr11 73405772 73405824 -75377648 + L1MB4 LINE L1 6129 6180 0 * 235 226 48 0 chr11 73407623 73407685 -75375787 - L2 LINE L2 -252 3061 2997 209 261 234 9 chr11 73408323 73408434 -75375038 + L2 LINE L2 3137 3272 0 507 233 50 0 chr11 73408522 73408642 -75374830 - MIR SINE MIR -123 139 14 288 287 228 0 chr11 73409442 73409543 -75373929 + L3 LINE CR1 440 563 -1014 1648 171 14 10 chr11 73410036 73410328 -75373144 + AluJo SINE Alu 1 293 -19 2391 69 3 3 chr11 73410473 73410779 -75372693 - AluY SINE Alu -5 306 1 879 94 0 0 chr11 73410959 73411076 -75372396 - AluSx SINE Alu -22 290 174 219 69 0 0 chr11 73411076 73411105 -75372367 + (A)n Simple_repeat Simple_repeat 1 29 0 1298 99 0 6 chr11 73411268 73411440 -75372032 - AluSx SINE Alu -141 171 1 267 321 168 34 chr11 73411938 73412264 -75371208 - L1ME4a LINE L1 -58 6063 5652 2346 64 0 3 chr11 73412264 73412559 -75370913 - AluSx SINE Alu -2 310 17 267 321 168 34 chr11 73412559 73412708 -75370764 - L1ME4a LINE L1 -469 5652 5524 479 273 63 0 chr11 73412860 73413003 -75370469 + MIR SINE MIR 36 187 -75 250 276 128 58 chr11 73413332 73413488 -75369984 - MER5B DNA MER1_type 0 178 12 876 36 0 0 chr11 73415715 73415827 -75367645 + (CA)n Simple_repeat Simple_repeat 2 113 0 498 17 0 0 chr11 73419007 73419066 -75364406 + (CA)n Simple_repeat Simple_repeat 2 60 0 216 143 0 0 chr11 73419545 73419587 -75363885 + (CGG)n Simple_repeat Simple_repeat 1 42 0 238 222 0 0 chr11 73420914 73420959 -75362513 - MIR SINE MIR -56 152 108 202 318 36 45 chr11 73421373 73421483 -75361989 + MIR SINE MIR 84 192 -70 221 285 175 15 chr11 73422294 73422431 -75361041 + MIR SINE MIR 2 160 -102 1616 177 3 14 chr11 73422652 73422946 -75360526 - AluJo SINE Alu -21 291 1 182 278 238 24 chr11 73423157 73423283 -75360189 + MIR SINE MIR 40 192 -70 181 329 14 14 chr11 73423661 73423734 -75359738 - L2 LINE L2 -155 3117 3045 658 259 32 26 chr11 73424515 73424704 -75358768 + MER91B DNA MER1_type 1 190 0 207 384 50 0 chr11 73425529 73425628 -75357844 - L2 LINE L2 -24 3248 3145 995 229 42 94 chr11 73425631 73426094 -75357378 + MLT1C LTR MaLR 9 346 -19 410 283 104 0 chr11 73427901 73428074 -75355398 + MER91A DNA MER1_type 1 191 -5 2302 236 57 0 chr11 73428285 73428866 -75354606 + L1MB5 LINE L1 5533 6146 -28 874 142 0 0 chr11 73428893 73429020 -75354452 - FLAM_C SINE Alu -4 129 3 1264 228 124 0 chr11 73429266 73429613 -75353859 - L1MB5 LINE L1 0 6174 5785 190 250 130 33 chr11 73429698 73429728 -75353744 - MIR SINE MIR -30 232 206 3006 82 0 3 chr11 73429728 73430104 -75353368 - THE1C LTR MaLR 0 375 1 190 250 130 33 chr11 73430104 73430165 -75353307 - MIR SINE MIR -56 206 132 209 288 0 0 chr11 73430198 73430264 -75353208 - MIR3 SINE MIR -138 70 5 332 125 34 11 chr11 73430860 73430948 -75352524 + (TCCA)n Simple_repeat Simple_repeat 3 92 0 288 329 159 26 chr11 73431293 73431608 -75351864 - L1ME4a LINE L1 -71 6050 5652 2321 63 0 10 chr11 73431608 73431907 -75351565 - AluSx SINE Alu 0 312 17 288 329 159 26 chr11 73431907 73432056 -75351416 - L1ME4a LINE L1 -469 5652 5524 479 273 63 0 chr11 73432208 73432351 -75351121 + MIR SINE MIR 36 187 -75 243 282 128 58 chr11 73432680 73432836 -75350636 - MER5B DNA MER1_type 0 178 12 528 30 0 0 chr11 73435066 73435132 -75348340 + (CA)n Simple_repeat Simple_repeat 2 67 0 210 37 0 0 chr11 73438313 73438340 -75345132 + (CA)n Simple_repeat Simple_repeat 2 28 0 195 167 0 0 chr11 73438818 73438860 -75344612 + (CGG)n Simple_repeat Simple_repeat 1 42 0 183 361 39 8 chr11 73441377 73441507 -75341965 + MIR SINE MIR 3 136 -72 193 299 65 0 chr11 73441948 73442025 -75341447 + L2 LINE L2 2430 2511 -803 266 300 123 54 chr11 73442087 73442148 -75341324 + L2 LINE L2 2702 2757 -556 2440 83 0 0 chr11 73442148 73442460 -75341012 - AluSx SINE Alu 0 312 1 266 300 123 54 chr11 73442460 73442876 -75340596 + L2 LINE L2 2757 3217 -96 374 321 0 0 chr11 73442965 73443071 -75340401 + MIR SINE MIR 42 147 -61 385 278 28 9 chr11 73443163 73443271 -75340201 + MER81 DNA DNA 3 112 -2 2399 161 49 2 chr11 73444004 73444414 -75339058 + MSTB1 LTR MaLR 4 432 0 1781 129 35 11 chr11 73444458 73444745 -75338727 - AluSq SINE Alu -19 294 1 1002 172 16 21 chr11 73444788 73444980 -75338492 - MER58A DNA MER1_type -22 202 12 631 293 43 11 chr11 73445381 73445569 -75337903 - MIR SINE MIR -18 244 51 218 332 34 24 chr11 73446090 73446305 -75337167 + L2 LINE L2 2928 3233 -39 284 249 41 140 chr11 73446375 73446596 -75336876 + MLT1L LTR MaLR 194 392 -223 276 269 0 0 chr11 73446670 73446737 -75336735 + MLT1L LTR MaLR 549 615 0 1770 148 44 0 chr11 73448232 73448530 -75334942 - AluJo SINE Alu -1 311 1 189 0 0 0 chr11 73448629 73448650 -75334822 + (T)n Simple_repeat Simple_repeat 1 21 0 1487 94 17 21 chr11 73448763 73448997 -75334475 + AluY SINE Alu 65 297 -14 249 108 0 0 chr11 73449217 73449254 -75334218 + (CA)n Simple_repeat Simple_repeat 2 38 0 290 307 0 11 chr11 73450069 73450157 -75333315 + MIR SINE MIR 169 255 -7 475 238 93 47 chr11 73450401 73450573 -75332899 - MLT1J1 LTR MaLR -204 242 63 1245 227 104 0 chr11 73452767 73453084 -75330388 - L1MB5 LINE L1 -8 6166 5817 2164 219 16 24 chr11 73453097 73453608 -75329864 - L1MB3 LINE L1 0 6183 5677 445 291 187 10 chr11 73454122 73454325 -75329147 + L3 LINE CR1 1321 1559 -18 580 216 0 0 chr11 73454927 73455038 -75328434 - L1MB5 LINE L1 -247 5927 5817 1376 199 14 14 chr11 73455052 73455333 -75328139 - L1MB3 LINE L1 0 6183 5903 515 261 11 0 chr11 73456395 73456656 -75326816 + (TCCA)n Simple_repeat Simple_repeat 1 263 0 463 299 178 32 chr11 73456673 73457011 -75326461 - L2 LINE L2 -1 3312 2926 191 303 200 12 chr11 73457050 73457370 -75326102 - L2 LINE L2 -470 2844 2465 252 365 37 44 chr11 73457875 73458091 -75325381 + MIR SINE MIR 36 249 -13 2182 107 0 19 chr11 73458473 73458791 -75324681 - AluSx SINE Alu 0 312 1 268 154 0 0 chr11 73459677 73459729 -75323743 + (TATATG)n Simple_repeat Simple_repeat 4 55 0 552 210 84 0 chr11 73459784 73459903 -75323569 + FLAM_C SINE Alu 5 133 0 2259 98 0 16 chr11 73460098 73460405 -75323067 - AluSg SINE Alu -8 302 1 565 262 30 6 chr11 73460770 73460934 -75322538 - MIR SINE MIR -83 179 12 186 287 69 11 chr11 73461195 73461282 -75322190 + L2 LINE L2 3144 3235 -37 1138 254 113 34 chr11 73461823 73462264 -75321208 - MLT1D LTR MaLR -6 499 24 517 156 0 21 chr11 73463971 73464067 -75319405 + AluSq/x SINE Alu 51 144 -168 215 220 20 0 chr11 73464202 73464252 -75319220 + GA-rich Low_complexity Low_complexity 3 53 0 696 154 89 0 chr11 73464707 73464830 -75318642 - FLAM_C SINE Alu -8 135 2 828 243 45 90 chr11 73465059 73465327 -75318145 - MLT1D LTR MaLR -6 499 206 2233 103 0 0 chr11 73465348 73465648 -75317824 - AluSx SINE Alu -12 300 1 1540 141 40 22 chr11 73465847 73466124 -75317348 + AluJo SINE Alu 1 282 -30 444 230 6 11 chr11 73467240 73467414 -75316058 + (CAT)n Simple_repeat Simple_repeat 1 173 0 535 271 188 18 chr11 73467582 73467800 -75315672 + MIR SINE MIR 3 257 -5 250 298 106 0 chr11 73468003 73468097 -75315375 - MIR SINE MIR -96 166 63 751 336 57 35 chr11 73469591 73469957 -75313515 + MLT1I LTR MaLR 1 374 -35 751 79 0 10 chr11 73469969 73470070 -75313402 - HY3 scRNA scRNA -1 100 1 233 213 0 0 chr11 73470167 73470214 -75313258 + MLT1K LTR MaLR 542 588 0 826 275 25 104 chr11 73470596 73471039 -75312433 + L2 LINE L2 2570 2977 -337 210 359 0 0 chr11 73471055 73471133 -75312339 + L2 LINE L2 3236 3313 0 227 351 72 0 chr11 73471277 73471388 -75312084 + MIR3 SINE MIR 58 176 -32 584 280 103 54 chr11 73473043 73473490 -75309982 + HAL1 LINE L1 1053 1521 -986 506 221 20 13 chr11 73473593 73473742 -75309730 + L1M4 LINE L1 2423 2572 -3574 253 260 104 0 chr11 73473969 73474046 -75309426 + HAL1 LINE L1 1812 1896 -611 279 0 0 0 chr11 73474359 73474390 -75309082 + (T)n Simple_repeat Simple_repeat 1 31 0 207 0 0 0 chr11 73474527 73474550 -75308922 + (A)n Simple_repeat Simple_repeat 1 23 0 185 406 47 0 chr11 73474731 73474859 -75308613 + MIR SINE MIR 73 206 -56 1812 160 0 0 chr11 73476081 73476384 -75307088 + AluJo SINE Alu 1 303 0 211 275 50 12 chr11 73476736 73476816 -75306656 - MIR SINE MIR -77 185 103 1566 28 0 0 chr11 73477136 73477318 -75306154 + AluY SINE Alu 115 296 -15 444 274 64 26 chr11 73477407 73477429 -75306043 + L1M4 LINE L1 2468 2488 -3658 1706 147 6 52 chr11 73477429 73477710 -75305762 + AluSx SINE Alu 1 266 -46 202 0 29 57 chr11 73477710 73477745 -75305727 + (CAAAA)n Simple_repeat Simple_repeat 1 34 0 1706 147 6 52 chr11 73477745 73477790 -75305682 + AluSx SINE Alu 266 312 0 444 274 64 26 chr11 73477790 73478033 -75305439 + L1M4 LINE L1 2488 2743 -3403 * 931 261 82 5 chr11 73478025 73478416 -75305056 + L1M4 LINE L1 3071 3491 -2655 832 144 0 0 chr11 73478425 73478550 -75304922 - AluSg/x SINE Alu -27 283 159 335 337 117 6 chr11 73479278 73479441 -75304031 - MIR SINE MIR -46 216 36 851 87 7 51 chr11 73479540 73479678 -75303794 + AluYb8 SINE Alu 1 132 -186 395 264 36 0 chr11 73479783 73479893 -75303579 + MER63A DNA MER1_type 97 210 0 253 278 194 49 chr11 73480015 73480159 -75303313 + MIR3 SINE MIR 30 194 -14 202 302 55 98 chr11 73480505 73480740 -75302732 + L2 LINE L2 3030 3254 -18 257 184 10 29 chr11 73480768 73480871 -75302601 + (TGGA)n Simple_repeat Simple_repeat 3 103 0 273 110 58 69 chr11 73480875 73481048 -75302424 + (GACTG)n Simple_repeat Simple_repeat 5 175 0 381 43 0 0 chr11 73481053 73481100 -75302372 + (TGGA)n Simple_repeat Simple_repeat 1 47 0 348 124 124 86 chr11 73481662 73481767 -75301705 + MLT1E2 LTR MaLR 136 244 -382 * 604 299 34 8 chr11 73481735 73482011 -75301461 + MLT1E2 LTR MaLR 357 617 -7 225 175 0 0 chr11 73482087 73482127 -75301345 + GA-rich Low_complexity Low_complexity 2 41 0 1076 288 56 31 chr11 73483048 73483531 -75299941 - MLT1D LTR MaLR -10 495 1 201 318 40 56 chr11 73484878 73485004 -75298468 - MIR SINE MIR -25 237 114 275 290 169 51 chr11 73485158 73485513 -75297959 + MLT1J LTR MaLR 110 506 -5 351 291 28 35 chr11 73485520 73485661 -75297811 - MIR SINE MIR -66 196 57 255 250 0 29 chr11 73485753 73485821 -75297651 - MIR SINE MIR -168 94 29 1764 153 14 11 chr11 73485931 73486212 -75297260 - AluJo SINE Alu -30 282 1 305 295 166 16 chr11 73491701 73491894 -75291578 + MIR SINE MIR 41 262 0 326 287 11 0 chr11 73492080 73492174 -75291298 - MIR SINE MIR -65 143 49 232 277 22 0 chr11 73492813 73492899 -75290573 + MIR SINE MIR 69 159 -49 183 301 27 0 chr11 73492936 73493009 -75290463 + L2 LINE L2 3188 3262 -51 203 247 0 24 chr11 73493635 73493720 -75289752 + (CATA)n Simple_repeat Simple_repeat 4 86 0 735 318 109 5 chr11 73494415 73494817 -75288655 + MER20B DNA MER1_type 6 449 -334 237 229 85 51 chr11 73494973 73495091 -75288381 + LTR33A LTR ERVL 1 122 -401 509 272 44 19 chr11 73495149 73495355 -75288117 + LTR33A LTR ERVL 297 507 -16 348 266 7 21 chr11 73495368 73495511 -75287961 + MER20B DNA MER1_type 641 781 -2 1804 265 71 28 chr11 73495918 73496128 -75287344 + MLT1E LTR MaLR 1 201 -392 273 29 0 0 chr11 73496128 73496162 -75287310 + (TC)n Simple_repeat Simple_repeat 1 34 0 1804 265 71 28 chr11 73496162 73496517 -75286955 + MLT1E LTR MaLR 201 590 -3 2148 117 0 0 chr11 73496869 73497168 -75286304 - AluSx SINE Alu -13 299 1 197 182 0 0 chr11 73497826 73497859 -75285613 - MIR SINE MIR -6 256 224 1045 255 78 16 chr11 73499475 73499799 -75283673 + MLT1H LTR MaLR 1 275 -255 656 250 55 0 chr11 73499788 73499952 -75283520 + MLT1H LTR MaLR 377 549 0 * 281 342 33 8 chr11 73499953 73500073 -75283399 + MIR SINE MIR 84 206 -56 447 489 6 54 chr11 73501741 73501756 -75281716 + L1MB5 LINE L1 5813 5827 -347 1985 117 26 16 chr11 73501756 73502065 -75281407 + AluSx SINE Alu 1 312 0 447 489 6 54 chr11 73502065 73502380 -75281092 + L1MB5 LINE L1 5827 6127 -47 1777 123 0 36 chr11 73502385 73502693 -75280779 - AluY SINE Alu -14 297 1 284 362 110 0 chr11 73502791 73502954 -75280518 + MIR SINE MIR 36 216 -46 2587 208 15 21 chr11 73503701 73503870 -75279602 - L1MB5 LINE L1 0 6174 6006 1575 221 38 46 chr11 73503870 73504263 -75279209 + MLT1B LTR MaLR 1 390 0 2587 208 15 21 chr11 73504263 73504622 -75278850 - L1MB5 LINE L1 -168 6006 5649 701 303 181 16 chr11 73504670 73505837 -75277635 + L2 LINE L2 1889 3272 0 464 293 7 7 chr11 73506036 73506186 -75277286 - L2 LINE L2 -236 3036 2887 420 300 36 7 chr11 73506224 73506364 -75277108 - MIR SINE MIR -70 192 49 783 212 22 0 chr11 73506364 73506548 -75276924 + MER58A DNA MER1_type 37 224 0 2195 115 0 0 chr11 73508285 73508581 -75274891 + AluSg SINE Alu 1 296 -14 920 264 140 26 chr11 73509150 73509571 -75273901 + MLT1D LTR MaLR 4 472 -33 977 155 22 62 chr11 73512515 73512741 -75270731 + MLT1B LTR MaLR 1 217 -173 292 215 38 51 chr11 73512880 73512959 -75270513 + L2 LINE L2 3211 3288 -25 246 247 0 101 chr11 73512953 73513042 -75270430 + L2 LINE L2 3232 3311 -2 * 180 152 0 0 chr11 73513850 73513883 -75269589 + (TCCA)n Simple_repeat Simple_repeat 3 35 0 1041 124 0 0 chr11 73513973 73514198 -75269274 + (TCCA)n Simple_repeat Simple_repeat 2 401 0 269 317 20 0 chr11 73515002 73515103 -75268369 + L2 LINE L2 2943 3045 -227 659 210 53 18 chr11 73516033 73516341 -75267131 + MLT1A2 LTR MaLR 10 371 -3 566 233 25 29 chr11 73517829 73518152 -75265320 + MER89 LTR ERV1 182 557 -2 321 186 0 90 chr11 73519734 73519879 -75263593 + C-rich Low_complexity Low_complexity 5 136 0 366 303 5 58 chr11 73520480 73520668 -75262804 + (TG)n Simple_repeat Simple_repeat 1 178 0 204 341 34 11 chr11 73520662 73520750 -75262722 + (CATG)n Simple_repeat Simple_repeat 1 90 0 * 283 315 247 0 chr11 73520813 73520959 -75262513 - MIR3 SINE MIR -13 195 14 298 291 50 40 chr11 73521366 73521565 -75261907 - MER20B DNA MER1_type -18 765 565 1015 312 105 22 chr11 73521856 73522836 -75260636 + L1ME LINE L1 176 1266 -4995 1913 250 72 28 chr11 73523719 73524867 -75258605 + L1MDb LINE L1 896 2439 -3967 21 0 0 0 chr11 73524884 73524905 -75258567 + AT_rich Low_complexity Low_complexity 1 21 0 510 182 0 10 chr11 73524911 73525010 -75258462 - FLAM_C SINE Alu -7 136 39 448 235 68 27 chr11 73525010 73525231 -75258241 + L1MDb LINE L1 2451 2680 -3726 2325 48 41 0 chr11 73525233 73525525 -75257947 + AluY SINE Alu 1 304 -7 1150 150 6 0 chr11 73525634 73525807 -75257665 + AluSq SINE Alu 1 174 -139 824 230 30 9 chr11 73525907 73526137 -75257335 + L1MB3 LINE L1 5947 6181 -2 341 316 26 0 chr11 73526683 73526797 -75256675 - FLAM_A SINE Alu -16 117 1 1172 148 0 41 chr11 73528188 73528431 -75255041 - AluSx SINE Alu -77 235 3 198 208 0 0 chr11 73528690 73528738 -75254734 + (CA)n Simple_repeat Simple_repeat 1 48 0 1067 260 56 21 chr11 73529914 73530199 -75253273 - AluJo SINE Alu -3 299 5 947 156 7 7 chr11 73530767 73530921 -75252551 - AluSq SINE Alu -159 154 1 499 249 56 31 chr11 73530997 73531031 -75252441 - L1MDa LINE L1 -3697 2843 2811 2283 52 41 0 chr11 73531031 73531321 -75252151 - AluY SINE Alu -7 304 3 499 249 56 31 chr11 73531321 73531548 -75251924 - L1MDa LINE L1 -3729 2811 2585 476 202 0 10 chr11 73531548 73531647 -75251825 + FLAM_C SINE Alu 39 136 -7 24 0 0 0 chr11 73531650 73531674 -75251798 + AT_rich Low_complexity Low_complexity 1 24 0 367 267 65 58 chr11 73531675 73532108 -75251364 - L1MDa LINE L1 -3967 2573 2146 411 246 65 35 chr11 73533408 73533607 -75249865 + L1MDb LINE L1 2799 3003 -3403 * 1520 276 73 15 chr11 73533599 73533981 -75249491 + L1MDb LINE L1 3331 3689 -2717 459 0 0 0 chr11 73533981 73534032 -75249440 + (TG)n Simple_repeat Simple_repeat 2 52 0 1932 141 0 0 chr11 73534032 73534315 -75249157 - AluSx SINE Alu -28 284 2 1520 276 73 15 chr11 73534315 73534656 -75248816 + L1MDb LINE L1 3688 4097 -2309 428 247 6 0 chr11 73536253 73536423 -75247049 + (TCCA)n Simple_repeat Simple_repeat 4 174 0 207 0 0 0 chr11 73536449 73536472 -75247000 + (TCCA)n Simple_repeat Simple_repeat 2 24 0 214 296 67 96 chr11 73536472 73536607 -75246865 - L2 LINE L2 0 3272 3142 398 404 5 0 chr11 73536842 73537055 -75246417 + MLT1K LTR MaLR 138 351 -237 1360 166 0 34 chr11 73537335 73537570 -75245902 - AluSq SINE Alu -86 227 1 200 309 74 12 chr11 73538095 73538176 -75245296 - MIR3 SINE MIR -16 192 107 477 299 100 15 chr11 73538551 73538822 -75244650 - MLT1K LTR MaLR -108 480 187 1188 241 37 26 chr11 73539846 73540164 -75243308 + MLT1B LTR MaLR 6 332 -58 1728 156 3 0 chr11 73540164 73540472 -75243000 - AluSg SINE Alu 0 309 1 1188 241 37 26 chr11 73540472 73540532 -75242940 + MLT1B LTR MaLR 332 390 0 1100 239 55 25 chr11 73541200 73541564 -75241908 + MLT1B LTR MaLR 16 390 0 1063 155 0 0 chr11 73542248 73542416 -75241056 - AluSx SINE Alu -144 168 1 2054 124 0 0 chr11 73544285 73544567 -75238905 - AluSg SINE Alu -28 282 1 327 320 65 26 chr11 73546122 73546275 -75237197 + MIR SINE MIR 14 172 -90 417 309 8 0 chr11 73546361 73546487 -75236985 + MIR SINE MIR 79 205 -57 204 331 108 29 chr11 73547135 73547274 -75236198 + MIR SINE MIR 61 210 -52 1576 201 18 71 chr11 73547617 73548010 -75235462 + MLT1A2 LTR MaLR 3 374 0 257 376 175 0 chr11 73549821 73550015 -75233457 - MIR SINE MIR -3 259 32 235 324 28 21 chr11 73550111 73550253 -75233219 - LTR67 LTR ERVL -2 555 413 614 348 50 69 chr11 73550757 73551136 -75232336 - L1ME LINE L1 -4993 1077 706 1223 211 44 17 chr11 73552965 73553259 -75230213 + AluJo SINE Alu 6 307 -5 319 316 17 69 chr11 73553853 73554027 -75229445 - L1ME LINE L1 -5903 167 3 196 296 74 12 chr11 73555300 73555381 -75228091 + MIR3 SINE MIR 107 192 -16 1663 197 37 24 chr11 73557873 73557933 -75225539 - MLT1B LTR MaLR 0 390 332 1999 112 4 0 chr11 73557933 73558241 -75225231 + AluSg SINE Alu 1 309 0 1663 197 37 24 chr11 73558241 73558559 -75224913 - MLT1B LTR MaLR -58 332 6 189 0 0 0 chr11 73558901 73558922 -75224550 + (A)n Simple_repeat Simple_repeat 1 21 0 2065 145 3 0 chr11 73559032 73559343 -75224129 + AluSx SINE Alu 1 312 0 339 275 62 37 chr11 73559362 73559635 -75223837 + L1M4 LINE L1 2464 2743 -3403 * 2253 257 60 11 chr11 73559627 73560009 -75223463 + L1M4 LINE L1 3071 3433 -2713 459 0 0 0 chr11 73560009 73560060 -75223412 + (TG)n Simple_repeat Simple_repeat 2 52 0 1977 131 0 0 chr11 73560060 73560343 -75223129 - AluSx SINE Alu -28 284 2 2253 257 60 11 chr11 73560343 73560787 -75222685 + L1M4 LINE L1 3432 3939 -2207 2232 107 0 0 chr11 73561304 73561603 -75221869 - AluSx SINE Alu -12 300 2 279 362 123 13 chr11 73563097 73563332 -75220140 + MIR SINE MIR 2 262 0 600 224 37 25 chr11 73563400 73563561 -75219911 + MIR SINE MIR 1 163 -99 837 265 195 45 chr11 73563563 73564050 -75219422 + MER68 LTR ERV1 3 562 0 623 253 20 0 chr11 73564064 73564210 -75219262 - MLT1C LTR MaLR 0 467 319 4072 81 33 11 chr11 73564210 73564913 -75218559 + LTR17 LTR ERV1 13 780 0 534 231 17 0 chr11 73564915 73565032 -75218440 - MLT1C LTR MaLR -134 333 215 3321 172 64 129 chr11 73565036 73565111 -75218361 + MER49 LTR ERV1 5 83 -840 2035 89 3 27 chr11 73565111 73565398 -75218074 + AluSc SINE Alu 1 281 -24 231 61 0 0 chr11 73565398 73565431 -75218041 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 1994 108 41 0 chr11 73565444 73565739 -75217733 + AluSx SINE Alu 1 307 -5 3321 172 64 129 chr11 73565739 73566636 -75216836 + MER49 LTR ERV1 91 923 0 417 237 90 57 chr11 73566663 73566840 -75216632 - MLT1C LTR MaLR -316 189 7 1171 211 126 32 chr11 73567343 73567685 -75215787 + MLT1A2 LTR MaLR 1 374 0 349 200 61 52 chr11 73567890 73568005 -75215467 - MER5A DNA MER1_type -65 124 9 237 184 382 0 chr11 73568074 73568150 -75215322 - MER5A DNA MER1_type -35 154 50 198 0 0 0 chr11 73568151 73568173 -75215299 + (CTG)n Simple_repeat Simple_repeat 1 22 0 435 278 19 0 chr11 73569327 73569435 -75214037 + MIR SINE MIR 72 181 -81 357 93 0 0 chr11 73570279 73570333 -75213139 + (TCCA)n Simple_repeat Simple_repeat 1 54 0 187 284 78 69 chr11 73570339 73570455 -75213017 - L2 LINE L2 -14 3258 3142 928 328 115 11 chr11 73570655 73571097 -75212375 + MLT1K LTR MaLR 99 586 -2 216 268 18 0 chr11 73571221 73571277 -75212195 + MIR SINE MIR 89 145 -63 849 302 114 14 chr11 73571491 73571859 -75211613 + MLT1J LTR MaLR 87 491 -20 2076 238 55 22 chr11 73572745 73573324 -75210148 + L1MB5 LINE L1 5569 6166 -8 218 289 31 41 chr11 73573502 73573599 -75209873 + MIR SINE MIR 53 148 -114 210 216 0 0 chr11 73574606 73574643 -75208829 + (TGGG)n Simple_repeat Simple_repeat 3 39 0 280 246 0 0 chr11 73574772 73574829 -75208643 - MER94 DNA DNA -76 58 2 367 335 12 12 chr11 73575157 73575318 -75208154 + (TG)n Simple_repeat Simple_repeat 2 162 0 1908 147 6 10 chr11 73576468 73576780 -75206692 - AluSx SINE Alu -1 311 1 412 294 40 0 chr11 73577560 73577686 -75205786 - MER45A DNA AcHobo -2 176 46 2071 95 3 10 chr11 73577716 73578011 -75205461 + AluSx SINE Alu 6 298 -14 744 306 49 79 chr11 73578030 73578559 -75204913 + MER34 LTR ERV1 1 513 -29 281 193 55 46 chr11 73579098 73579207 -75204265 + L1ME4a LINE L1 6001 6110 -11 3570 191 37 22 chr11 73579232 73579877 -75203595 + L1MB7 LINE L1 5346 6007 -177 2100 113 17 0 chr11 73579877 73580168 -75203304 - AluSx SINE Alu -14 298 3 3570 191 37 22 chr11 73580168 73580330 -75203142 + L1MB7 LINE L1 6007 6165 -19 1401 195 27 24 chr11 73580432 73580729 -75202743 + AluJo SINE Alu 1 298 -14 2041 131 0 0 chr11 73580731 73581028 -75202444 + AluSg SINE Alu 1 297 -13 180 217 0 0 chr11 73582218 73582264 -75201208 + (CCCA)n Simple_repeat Simple_repeat 1 46 0 206 275 0 0 chr11 73582288 73582328 -75201144 + (CCCA)n Simple_repeat Simple_repeat 1 40 0 575 218 0 17 chr11 73582329 73582508 -75200964 + (TCCA)n Simple_repeat Simple_repeat 4 179 0 221 323 0 0 chr11 73582514 73582576 -75200896 + (CCCA)n Simple_repeat Simple_repeat 4 65 0 520 254 11 0 chr11 73582576 73582753 -75200719 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 1021 254 10 85 chr11 73583042 73583432 -75200040 + MLT2C1 LTR ERVL 37 397 0 650 304 77 16 chr11 73583566 73583813 -75199659 + MLT1J2 LTR MaLR 189 450 0 840 200 0 0 chr11 73584750 73584930 -75198542 + (CCAA)n Simple_repeat Simple_repeat 1 180 0 1176 98 0 0 chr11 73584945 73585118 -75198354 + (CCAA)n Simple_repeat Simple_repeat 4 176 0 1001 254 118 7 chr11 73585474 73585746 -75197726 + AluSx SINE Alu 1 302 0 2430 230 58 66 chr11 73585759 73585826 -75197646 + L1ME2 LINE L1 5123 5189 -975 1221 183 42 46 chr11 73585826 73586066 -75197406 - MER8 DNA MER2_type 0 239 1 2430 230 58 66 chr11 73586066 73586672 -75196800 + L1ME2 LINE L1 5189 5798 -366 1946 135 17 0 chr11 73586672 73586968 -75196504 + AluSq SINE Alu 3 303 -10 2430 230 58 66 chr11 73586968 73587228 -75196244 + L1ME2 LINE L1 5798 6030 -134 1990 141 7 0 chr11 73587228 73587527 -75195945 - AluSq SINE Alu -12 301 1 2430 230 58 66 chr11 73587527 73587652 -75195820 + L1ME2 LINE L1 6030 6155 -9 1007 184 97 123 chr11 73587874 73588065 -75195407 + MLT1D LTR MaLR 1 196 -309 2238 122 0 0 chr11 73588065 73588377 -75195095 - AluSx SINE Alu 0 312 1 1007 184 97 123 chr11 73588377 73588598 -75194874 + MLT1D LTR MaLR 196 402 -103 487 238 16 50 chr11 73589462 73589709 -75193763 + MER41B LTR ERV1 54 431 -204 402 21 0 0 chr11 73590501 73590548 -75192924 + (CA)n Simple_repeat Simple_repeat 1 47 0 2146 110 0 16 chr11 73591795 73592104 -75191368 + AluSx SINE Alu 3 306 -6 219 262 98 0 chr11 73592461 73592522 -75190950 + L2 LINE L2 3246 3312 -1 1455 176 44 17 chr11 73592702 73592998 -75190474 - AluJo SINE Alu -3 309 6 382 250 54 18 chr11 73593651 73593763 -75189709 + MIR SINE MIR 64 179 -83 240 309 12 0 chr11 73595865 73595946 -75187526 + (CTCA)n Simple_repeat Simple_repeat 4 85 0 * 295 250 16 0 chr11 73595887 73595951 -75187521 + (CCCA)n Simple_repeat Simple_repeat 2 66 0 748 158 6 6 chr11 73595964 73596122 -75187350 + (TCCA)n Simple_repeat Simple_repeat 1 158 0 282 318 0 55 chr11 73596693 73596803 -75186669 + (CCCA)n Simple_repeat Simple_repeat 1 104 0 488 235 0 17 chr11 73596804 73596983 -75186489 + (TCCA)n Simple_repeat Simple_repeat 4 179 0 753 229 8 11 chr11 73597043 73597567 -75185905 + (TCCA)n Simple_repeat Simple_repeat 1 522 0 287 314 0 59 chr11 73597567 73597685 -75185787 - L2 LINE L2 0 3313 3203 285 227 92 99 chr11 73597808 73597949 -75185523 + MER5B DNA MER1_type 5 144 -34 359 264 141 0 chr11 73598049 73598170 -75185302 - MIR SINE MIR -44 218 81 1580 220 45 21 chr11 73598443 73598820 -75184652 + MLT1B LTR MaLR 5 390 0 953 256 88 40 chr11 73599884 73600236 -75183236 + MLT1K LTR MaLR 155 523 -65 2022 98 4 4 chr11 73600608 73600885 -75182587 - AluSx SINE Alu -15 297 21 22 0 0 0 chr11 73601586 73601608 -75181864 + AT_rich Low_complexity Low_complexity 1 22 0 2410 45 0 10 chr11 73601608 73601619 -75181853 + L1PA4 LINE L1 5643 5653 -502 1533 43 11 0 chr11 73601619 73601803 -75181669 - L1PA5 LINE L1 -3 6151 5966 2410 45 0 10 chr11 73601803 73602102 -75181370 + L1PA5 LINE L1 5653 5950 -205 1780 122 42 7 chr11 73602102 73602390 -75181082 - AluSq SINE Alu -15 298 1 299 317 27 30 chr11 73602606 73602873 -75180599 + L1M2 LINE L1 5189 5455 -743 757 263 133 33 chr11 73602938 73603269 -75180203 + MLT1A2 LTR MaLR 4 367 -7 1390 126 3 107 chr11 73604215 73604525 -75178947 - AluSx SINE Alu -16 296 19 779 69 0 20 chr11 73604525 73604627 -75178845 - AluS SINE Alu -211 101 2 242 285 36 73 chr11 73606511 73606648 -75176824 - MIR SINE MIR -46 216 85 211 129 32 75 chr11 73606870 73606963 -75176509 + (CACCAT)n Simple_repeat Simple_repeat 1 89 0 747 183 0 0 chr11 73606996 73607176 -75176296 + (CCA)n Simple_repeat Simple_repeat 1 180 0 315 233 0 0 chr11 73607165 73607268 -75176204 + (CACCAT)n Simple_repeat Simple_repeat 4 106 0 * 747 213 0 5 chr11 73607271 73607675 -75175797 + (CCA)n Simple_repeat Simple_repeat 1 402 0 218 306 165 41 chr11 73607751 73607921 -75175551 + MIR SINE MIR 16 206 -56 1195 219 43 0 chr11 73608244 73608500 -75174972 + Tigger7 DNA MER2_type 1 267 -2220 350 226 0 12 chr11 73608527 73608611 -75174861 + Tigger7 DNA MER2_type 2405 2487 0 218 319 14 0 chr11 73609140 73609209 -75174263 + MIR SINE MIR 123 192 -70 214 306 35 0 chr11 73610104 73610189 -75173283 - MIR3 SINE MIR -14 194 107 1978 176 12 76 chr11 73610289 73610710 -75172762 + MLT2C1 LTR ERVL 4 397 0 573 304 77 16 chr11 73610842 73611089 -75172383 + MLT1J2 LTR MaLR 189 450 0 576 171 0 0 chr11 73612012 73612123 -75171349 + (CCAA)n Simple_repeat Simple_repeat 3 113 0 1856 134 17 17 chr11 73612443 73612742 -75170730 + AluJo SINE Alu 1 299 -13 220 270 79 0 chr11 73614359 73614422 -75169050 - L3 LINE CR1 -84 1493 1426 370 307 65 26 chr11 73616285 73616438 -75167034 + MIR SINE MIR 14 172 -90 546 255 7 34 chr11 73616524 73616673 -75166799 + MIR SINE MIR 79 223 -39 218 286 200 19 chr11 73616811 73617021 -75166451 + L2 LINE L2 3025 3272 0 239 324 28 21 chr11 73617727 73617869 -75165603 + LTR67 LTR ERVL 413 555 -2 278 371 175 0 chr11 73617965 73618159 -75165313 + MIR SINE MIR 32 259 -3 229 279 38 25 chr11 73620212 73620291 -75163181 + MIR3 SINE MIR 113 192 -16 243 324 108 22 chr11 73620762 73620901 -75162571 + MIR SINE MIR 60 210 -52 1550 204 18 71 chr11 73621244 73621637 -75161835 + MLT1A2 LTR MaLR 3 374 0 326 327 105 41 chr11 73621702 73622121 -75161351 + L2 LINE L2 2824 3269 -44 2171 112 6 10 chr11 73622139 73622452 -75161020 + AluSx SINE Alu 1 312 0 227 268 73 39 chr11 73622715 73622920 -75160552 - L1ME LINE L1 -5327 743 532 410 270 11 63 chr11 73623381 73623555 -75159917 - L1ME LINE L1 -5903 167 3 200 309 74 12 chr11 73624823 73624904 -75158568 + MIR3 SINE MIR 107 192 -16 2011 131 0 27 chr11 73625427 73625725 -75157747 + AluSx SINE Alu 1 290 -22 272 325 0 0 chr11 73625842 73625925 -75157547 - MIR SINE MIR -103 159 77 243 267 0 0 chr11 73626877 73626937 -75156535 + MIR SINE MIR 80 139 -123 220 161 0 54 chr11 73627664 73627776 -75155696 + (GGCTG)n Simple_repeat Simple_repeat 2 107 0 1160 209 62 3 chr11 73627877 73628183 -75155289 + MLT1B LTR MaLR 28 351 -39 378 286 88 33 chr11 73629138 73629320 -75154152 - L1ME LINE L1 -385 5736 5545 2384 97 0 0 chr11 73629366 73629676 -75153796 + AluSg SINE Alu 1 310 0 1668 152 48 21 chr11 73630714 73631003 -75152469 - AluJo SINE Alu -15 297 1 196 239 128 46 chr11 73631249 73631358 -75152114 + MIR SINE MIR 127 244 -18 372 192 88 64 chr11 73632642 73632767 -75150705 - Charlie8 DNA MER1_type -2276 141 14 337 276 51 0 chr11 73632903 73633001 -75150471 + MER103 DNA DNA 2 104 -62 250 311 19 0 chr11 73632997 73633100 -75150372 + MER103 DNA DNA 62 166 0 * 584 241 27 0 chr11 73633616 73633728 -75149744 + FLAM_A SINE Alu 1 115 -18 1891 190 23 3 chr11 73634276 73634629 -75148843 - L1MB3 LINE L1 -2 6181 5822 262 279 240 8 chr11 73634635 73634764 -75148708 - MIR SINE MIR -70 192 34 1012 302 80 41 chr11 73635689 73636179 -75147293 + MLT1J LTR MaLR 1 509 -2 2211 99 0 0 chr11 73637005 73637287 -75146185 + AluSg SINE Alu 1 282 -28 771 252 181 33 chr11 73638111 73638508 -75144964 - MLT1C LTR MaLR -9 458 3 304 345 7 41 chr11 73638508 73638653 -75144819 + L1ME4a LINE L1 5981 6120 -1 189 225 0 0 chr11 73640116 73640156 -75143316 + MIR SINE MIR 212 251 -11 213 196 0 0 chr11 73640166 73640212 -75143260 + GA-rich Low_complexity Low_complexity 2 47 0 267 190 0 0 chr11 73640241 73640299 -75143173 + (TGGA)n Simple_repeat Simple_repeat 4 61 0 672 210 0 0 chr11 73640321 73640488 -75142984 + (TGGA)n Simple_repeat Simple_repeat 4 170 0 202 263 0 0 chr11 73640492 73640530 -75142942 + (TGGG)n Simple_repeat Simple_repeat 1 38 0 758 198 6 0 chr11 73640530 73640707 -75142765 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 219 302 0 0 chr11 73640685 73640781 -75142691 + (TGGG)n Simple_repeat Simple_repeat 1 96 0 * 596 240 9 0 chr11 73640793 73641028 -75142444 + (TGGA)n Simple_repeat Simple_repeat 1 237 0 260 328 106 28 chr11 73641113 73641293 -75142179 - MIR SINE MIR -45 217 24 696 205 0 0 chr11 73641610 73641771 -75141701 + (TCCA)n Simple_repeat Simple_repeat 3 163 0 204 342 60 34 chr11 73641804 73641921 -75141551 - L2 LINE L2 0 3313 3194 346 335 85 24 chr11 73641923 73642087 -75141385 - MER5A DNA MER1_type -9 180 7 209 237 40 53 chr11 73643666 73643742 -75139730 + MIR3 SINE MIR 112 186 -22 433 283 47 70 chr11 73644038 73644381 -75139091 + L1ME LINE L1 736 1070 -5000 1921 221 54 27 chr11 73645779 73645971 -75137501 + L1MB3 LINE L1 5620 5805 -378 1951 143 0 3 chr11 73645971 73646271 -75137201 + AluSx SINE Alu 1 299 -13 1921 221 54 27 chr11 73646271 73646616 -75136856 + L1MB3 LINE L1 5805 6172 -11 2010 146 0 0 chr11 73646618 73646926 -75136546 - AluSx SINE Alu -4 308 1 1225 181 0 43 chr11 73646948 73647180 -75136292 + AluJb SINE Alu 82 303 -9 443 262 50 109 chr11 73649011 73649213 -75134259 + MIR SINE MIR 25 214 -48 964 113 34 2 chr11 73649937 73650284 -75133188 + (TCCA)n Simple_repeat Simple_repeat 1 540 0 230 265 82 10 chr11 73650353 73650451 -75133021 + MIR SINE MIR 56 160 -102 200 247 44 57 chr11 73650803 73650932 -75132540 - MIR SINE MIR -64 198 73 219 345 67 0 chr11 73651459 73651578 -75131894 - L2 LINE L2 0 3272 3146 2067 130 0 3 chr11 73652471 73652771 -75130701 + AluSx SINE Alu 1 299 -13 342 0 0 0 chr11 73653611 73653649 -75129823 + (CA)n Simple_repeat Simple_repeat 2 39 0 407 301 55 7 chr11 73654601 73654747 -75128725 - MIR SINE MIR -68 194 42 229 355 54 54 chr11 73656045 73656158 -75127314 - MIR SINE MIR -1 261 146 1972 138 0 0 chr11 73656158 73656440 -75127032 - AluSx SINE Alu -24 288 7 229 355 54 54 chr11 73656440 73656529 -75126943 - MIR SINE MIR -115 147 59 237 180 0 0 chr11 73656699 73656749 -75126723 + (CA)n Simple_repeat Simple_repeat 1 50 0 1663 197 37 24 chr11 73659510 73659828 -75123644 + MLT1B LTR MaLR 6 332 -58 1998 112 4 0 chr11 73659828 73660136 -75123336 - AluSg SINE Alu 0 309 1 1663 197 37 24 chr11 73660136 73660196 -75123276 + MLT1B LTR MaLR 332 390 0 28 0 0 0 chr11 73664595 73664623 -75118849 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 73664873 73664895 -75118577 + AT_rich Low_complexity Low_complexity 1 22 0 303 308 142 0 chr11 73665603 73665723 -75117749 + MIR SINE MIR 117 253 -9 328 309 86 52 chr11 73666926 73667253 -75116219 + L2 LINE L2 2617 2954 -360 188 289 0 10 chr11 73667426 73667523 -75115949 + (TGGA)n Simple_repeat Simple_repeat 1 96 0 379 273 6 12 chr11 73667563 73667728 -75115744 + (TGGA)n Simple_repeat Simple_repeat 1 164 0 530 221 6 22 chr11 73667762 73667943 -75115529 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 816 138 0 59 chr11 73669106 73669258 -75114214 + FLAM_C SINE Alu 1 143 0 271 313 84 62 chr11 73670647 73670874 -75112598 - L2 LINE L2 -589 2725 2494 315 57 113 40 chr11 73670887 73671011 -75112461 + (GACTG)n Simple_repeat Simple_repeat 5 137 0 272 298 219 17 chr11 73671018 73671256 -75112216 - L2 LINE L2 -798 2516 2231 1029 231 88 14 chr11 73672083 73672378 -75111094 + MLT1B LTR MaLR 73 389 -1 259 286 24 0 chr11 73672826 73672910 -75110562 - MIR3 SINE MIR -52 156 71 831 196 0 19 chr11 73672955 73673113 -75110359 + MLT1A1 LTR MaLR 1 155 -210 1791 138 8 0 chr11 73673138 73673406 -75110066 + AluJo SINE Alu 22 291 -21 514 281 9 0 chr11 73673424 73673538 -75109934 + MLT1A1 LTR MaLR 250 364 -1 219 146 0 0 chr11 73674157 73674198 -75109274 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 22 0 0 0 chr11 73675484 73675506 -75107966 + AT_rich Low_complexity Low_complexity 1 22 0 272 238 12 38 chr11 73676701 73676781 -75106691 + MIR SINE MIR 80 157 -105 636 207 7 7 chr11 73676844 73676979 -75106493 - MIR SINE MIR -106 156 22 1803 197 29 18 chr11 73677282 73677668 -75105804 + MLT1B LTR MaLR 1 390 0 528 157 101 82 chr11 73678341 73678500 -75104972 + MLT1C LTR MaLR 17 178 -289 1895 215 45 22 chr11 73678864 73679142 -75104330 - MLT1C LTR MaLR -1 466 196 228 67 0 0 chr11 73679142 73679172 -75104300 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 2136 92 0 3 chr11 73679172 73679456 -75104016 - AluSx SINE Alu -29 283 1 1895 215 45 22 chr11 73679456 73679623 -75103849 - MLT1C LTR MaLR -270 197 10 669 313 62 0 chr11 73680434 73680674 -75102798 - MER46C DNA MER2_type -77 261 7 591 137 0 63 chr11 73682417 73682607 -75100865 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 412 18 35 0 chr11 73682629 73682686 -75100786 + (CTAAT)n Simple_repeat Simple_repeat 5 63 0 241 67 22 22 chr11 73682696 73682741 -75100731 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 762 182 30 0 chr11 73682741 73682873 -75100599 - FRAM SINE Alu -28 148 13 2457 235 89 44 chr11 73682873 73683669 -75099803 - MER97a DNA MER1_type? -54 840 9 1427 48 5 21 chr11 73683717 73683948 -75099524 + AluY SINE Alu 99 326 0 1656 169 24 7 chr11 73683964 73684260 -75099212 + AluJb SINE Alu 1 301 -11 2263 86 3 0 chr11 73684260 73684551 -75098921 + AluSp SINE Alu 1 292 -21 490 190 17 0 chr11 73684559 73684675 -75098797 + (CA)n Simple_repeat Simple_repeat 2 119 0 2256 92 7 0 chr11 73684677 73684982 -75098490 + AluY SINE Alu 1 307 -4 342 67 0 0 chr11 73684986 73685031 -75098441 + (CA)n Simple_repeat Simple_repeat 2 46 0 228 385 18 0 chr11 73685958 73686067 -75097405 + MLT1K LTR MaLR 188 298 -290 242 243 0 86 chr11 73686205 73686275 -75097197 - L2 LINE L2 -4 3309 3246 226 245 0 0 chr11 73687804 73687853 -75095619 - MIR SINE MIR -84 124 76 1569 197 0 29 chr11 73689353 73689662 -75093810 - AluJo SINE Alu -12 300 1 607 234 0 0 chr11 73689757 73689864 -75093608 + FLAM_C SINE Alu 10 116 -27 429 20 0 0 chr11 73689864 73689914 -75093558 + (TAA)n Simple_repeat Simple_repeat 2 51 0 1280 163 106 43 chr11 73690040 73690322 -75093150 - AluJo SINE Alu -12 300 1 263 282 13 13 chr11 73690474 73690552 -75092920 + GA-rich Low_complexity Low_complexity 2 79 0 196 278 124 53 chr11 73691339 73691508 -75091964 + MIR SINE MIR 7 187 -75 245 131 33 66 chr11 73691765 73691826 -75091646 + MER76 LTR ERV 477 535 -153 795 250 181 14 chr11 73692516 73692808 -75090664 + MER20B DNA MER1_type 68 408 -375 2371 82 0 0 chr11 73693027 73693330 -75090142 - AluSq SINE Alu -7 306 4 355 264 32 16 chr11 73693335 73693460 -75090012 + MER20B DNA MER1_type 654 780 -3 255 93 0 0 chr11 73694989 73695032 -75088440 + (CA)n Simple_repeat Simple_repeat 1 43 0 24 0 0 0 chr11 73695667 73695691 -75087781 + AT_rich Low_complexity Low_complexity 1 24 0 2201 107 0 7 chr11 73696843 73697153 -75086319 + AluSx SINE Alu 1 308 -4 1357 224 106 39 chr11 73697339 73697772 -75085700 + MLT1C LTR MaLR 6 467 0 300 282 74 20 chr11 73697858 73698007 -75085465 + MER5A DNA MER1_type 18 174 -15 517 141 174 83 chr11 73698874 73698905 -75084567 - MLT1C LTR MaLR -33 434 407 2212 68 41 0 chr11 73698905 73699200 -75084272 + AluY SINE Alu 1 307 -4 517 141 174 83 chr11 73699200 73699289 -75084183 - MLT1C LTR MaLR -60 407 336 585 280 28 14 chr11 73700517 73700728 -75082744 + LTR16C LTR ERVL 267 480 -11 2251 79 30 0 chr11 73701855 73702159 -75081313 - AluSq SINE Alu 0 313 1 200 342 117 8 chr11 73702650 73702770 -75080702 - MIR SINE MIR -46 216 84 1258 181 66 4 chr11 73703510 73703769 -75079703 - L1MC1 LINE L1 0 6333 6059 869 206 67 0 chr11 73705059 73705239 -75078233 + MLT2C1 LTR ERVL 150 341 -56 232 196 22 0 chr11 73705253 73705299 -75078173 + MLT1C-int LTR MaLR 1 47 -1324 192 77 0 0 chr11 73705608 73705634 -75077838 + (CA)n Simple_repeat Simple_repeat 2 27 0 1730 151 26 30 chr11 73705634 73705938 -75077534 - AluSx SINE Alu -9 303 1 366 23 0 0 chr11 73705946 73705989 -75077483 + (CA)n Simple_repeat Simple_repeat 2 44 0 222 118 0 0 chr11 73705988 73706022 -75077450 + (TA)n Simple_repeat Simple_repeat 2 35 0 * 476 84 12 36 chr11 73706051 73706134 -75077338 + MLT1C-int LTR MaLR 35 115 -1620 * 2012 190 5 24 chr11 73706125 73706535 -75076937 + MLT1C-int LTR MaLR 260 661 -710 226 250 16 0 chr11 73706544 73706608 -75076864 + MLT1C-int LTR MaLR 819 883 -488 305 323 10 0 chr11 73706823 73706919 -75076553 + (TGGG)n Simple_repeat Simple_repeat 2 98 0 660 236 0 0 chr11 73706927 73707105 -75076367 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 596 240 9 0 chr11 73707147 73707382 -75076090 + (TGGA)n Simple_repeat Simple_repeat 1 237 0 272 324 104 28 chr11 73707467 73707649 -75075823 - MIR SINE MIR -45 217 22 303 308 142 0 chr11 73708026 73708146 -75075326 + MIR SINE MIR 117 253 -9 1785 244 45 21 chr11 73908448 73909005 -74874467 - HAL1 LINE L1 -741 1766 1197 1778 142 4 11 chr11 73909007 73909282 -74874190 - AluSx SINE Alu -8 304 32 242 253 68 27 chr11 73910096 73910217 -74873255 - MIR SINE MIR -84 124 4 1649 180 0 7 chr11 73910345 73910657 -74872815 - AluJb SINE Alu 0 311 2 1357 215 114 5 chr11 73910712 73911116 -74872356 - MLT1C LTR MaLR 0 467 20 1670 172 17 40 chr11 73911116 73911464 -74872008 - L1MA5 LINE L1 0 6300 5961 2338 149 2 52 chr11 73911465 73911890 -74871582 - L1MA5 LINE L1 -458 5842 5446 1910 141 43 0 chr11 73911890 73912189 -74871283 - AluSx SINE Alu 0 312 1 2338 149 2 52 chr11 73912189 73912279 -74871193 - L1MA5 LINE L1 -854 5446 5353 1881 66 0 8 chr11 73912379 73912623 -74870849 - AluY SINE Alu -69 242 1 21 36 0 0 chr11 73912629 73912657 -74870815 + AT_rich Low_complexity Low_complexity 1 28 0 310 301 8 16 chr11 73912660 73912783 -74870689 - MLT2E LTR ERVL -2 626 505 427 320 21 70 chr11 73912909 73913240 -74870232 + ERVL LTR ERVL 318 632 -5132 544 312 69 27 chr11 73913255 73913588 -74869884 + ERVL LTR ERVL 860 1206 -4558 2178 109 3 0 chr11 73913601 73913904 -74869568 - AluSq SINE Alu -9 304 1 2145 130 3 0 chr11 73913904 73914211 -74869261 - AluSx SINE Alu -4 308 1 778 263 91 0 chr11 73914271 73914469 -74869003 - MER20 DNA MER1_type 0 219 4 871 238 115 76 chr11 73915278 73915635 -74867837 - MLT1A2 LTR MaLR -3 371 1 289 283 71 18 chr11 73915722 73915835 -74867637 + MIR SINE MIR 65 183 -79 415 243 117 0 chr11 73916308 73916419 -74867053 - L2 LINE L2 -13 3259 3136 1907 134 0 14 chr11 73916482 73916772 -74866700 + AluSx SINE Alu 6 291 -21 539 224 0 6 chr11 73916951 73917116 -74866356 + (TCCA)n Simple_repeat Simple_repeat 1 164 0 1135 220 65 82 chr11 73917396 73917771 -74865701 - MLT1E2 LTR MaLR 0 626 257 2061 71 11 4 chr11 73917771 73918039 -74865433 + AluSc SINE Alu 19 288 -21 1135 220 65 82 chr11 73918039 73918091 -74865381 - MLT1E2 LTR MaLR -369 257 206 22 0 0 0 chr11 73918126 73918148 -74865324 + AT_rich Low_complexity Low_complexity 1 22 0 1919 83 68 122 chr11 73918158 73918602 -74864870 + MER4A LTR ERV1 1 420 -244 663 117 0 19 chr11 73918647 73918750 -74864722 - AluSx SINE Alu 0 312 212 629 110 213 7 chr11 73918765 73918901 -74864571 + MER4C LTR ERV1 302 465 0 2436 151 35 2 chr11 73918901 73919364 -74864108 - L1MB3 LINE L1 -46 6137 5660 1873 86 0 0 chr11 73919364 73919598 -74863874 + AluSq SINE Alu 1 234 -79 465 111 0 25 chr11 73919612 73919693 -74863779 + MER41C LTR ERV1 1 79 -475 255 220 0 17 chr11 73919683 73919742 -74863730 + MER41A LTR ERV1 23 80 -474 * 319 82 0 20 chr11 73919732 73919781 -74863691 + MER41C LTR ERV1 23 70 -484 2061 141 80 13 chr11 73919781 73920179 -74863293 + MER41C LTR ERV1 23 447 -107 182 278 233 0 chr11 73920851 73920941 -74862531 - MIR SINE MIR -85 177 67 1683 120 0 0 chr11 73924419 73924653 -74858819 - AluSx SINE Alu -78 234 1 456 314 24 5 chr11 73924702 73924912 -74858560 + L1M4 LINE L1 4110 4323 -1823 385 287 17 0 chr11 73924991 73925106 -74858366 - MLT1I LTR MaLR -203 206 90 * 1635 236 55 15 chr11 73925102 73925556 -74857916 + MLT1E LTR MaLR 122 593 0 297 326 38 11 chr11 73925641 73925825 -74857647 + L1M4 LINE L1 4955 5143 -1003 2462 91 30 21 chr11 73926062 73926434 -74857038 - THE1C LTR MaLR 0 375 1 242 327 20 0 chr11 73927332 73927433 -74856039 - AluSq/x SINE Alu -200 103 1 2821 157 34 5 chr11 73927433 73928156 -74855316 - L1M2 LINE L1 -859 5441 4557 515 155 17 26 chr11 73928165 73928281 -74855191 + ORSL DNA AcHobo 137 251 -24 254 281 10 52 chr11 73929035 73929131 -74854341 - MIR3 SINE MIR -12 196 105 503 260 51 28 chr11 73929167 73929344 -74854128 + MIR SINE MIR 3 183 -66 331 305 11 51 chr11 73930025 73930107 -74853365 + Charlie5 DNA MER1_type 10 94 -2530 987 163 41 10 chr11 73930107 73930303 -74853169 + L1MA1 LINE L1 6097 6298 -4 331 305 11 51 chr11 73930303 73930338 -74853134 + Charlie5 DNA MER1_type 94 129 -2495 2285 100 0 0 chr11 73930338 73930637 -74852835 + AluSg SINE Alu 1 299 -11 331 305 11 51 chr11 73930637 73930695 -74852777 + Charlie5 DNA MER1_type 129 179 -2445 815 185 92 0 chr11 73930699 73930926 -74852546 + Charlie5 DNA MER1_type 2354 2601 -11 950 179 115 0 chr11 73930928 73931146 -74852326 - Tigger5 DNA MER2_type 0 2323 2081 352 213 38 12 chr11 73931136 73931216 -74852256 - Tigger5 DNA MER2_type -2241 82 1 * 385 179 123 9 chr11 73931220 73931326 -74852146 + Tigger2a DNA MER2_type 1 118 -316 187 234 32 53 chr11 73931347 73931441 -74852031 + (GGGTG)n Simple_repeat Simple_repeat 3 94 0 282 249 5 58 chr11 73931467 73931656 -74851816 + (TGGG)n Simple_repeat Simple_repeat 1 179 0 * 290 203 28 39 chr11 73931633 73931815 -74851657 + (TGG)n Simple_repeat Simple_repeat 1 180 0 * 345 141 74 30 chr11 73931685 73931820 -74851652 + (GTGTG)n Simple_repeat Simple_repeat 1 141 0 413 232 72 29 chr11 73932297 73932435 -74851037 - MIR SINE MIR -98 164 21 377 182 0 0 chr11 73932668 73932734 -74850738 - MIR SINE MIR -113 149 84 419 297 86 19 chr11 73933078 73933174 -74850298 + MIR SINE MIR 5 93 -169 2150 110 0 7 chr11 73933174 73933474 -74849998 - AluSx SINE Alu -14 298 1 419 297 86 19 chr11 73933474 73933586 -74849886 + MIR SINE MIR 93 227 -35 273 326 170 0 chr11 73934148 73934289 -74849183 - MIR SINE MIR -17 245 81 259 205 96 48 chr11 73935129 73935212 -74848260 - L2 LINE L2 -1 3312 3226 2226 81 3 0 chr11 73937450 73937735 -74845737 - AluSx SINE Alu -26 286 1 722 134 0 0 chr11 73937737 73937856 -74845616 + MER41A LTR ERV1 436 554 0 466 216 42 72 chr11 73937856 73938023 -74845449 - MLT1E2 LTR MaLR -464 162 1 433 265 66 33 chr11 73938041 73938222 -74845250 + L1ME LINE L1 5302 5488 -676 205 0 83 28 chr11 73938280 73938316 -74845156 + T-rich Low_complexity Low_complexity 4 41 0 2191 81 3 13 chr11 73938884 73939182 -74844290 + AluSx SINE Alu 1 295 -17 266 275 0 0 chr11 73939205 73939274 -74844198 + MIR SINE MIR 82 150 -58 321 282 0 0 chr11 73939424 73939502 -74843970 - L2 LINE L2 -11 3261 3184 * 435 271 48 28 chr11 73939476 73939676 -74843796 + MIR SINE MIR 9 209 -53 294 284 35 71 chr11 73939866 73940035 -74843437 - MIR3 SINE MIR -37 171 9 2174 113 0 3 chr11 73940244 73940546 -74842926 + AluSx SINE Alu 1 301 -11 225 303 28 0 chr11 73940885 73940994 -74842478 + MER113 DNA MER1_type? 1 112 -409 794 224 45 0 chr11 73941094 73941273 -74842199 - MLT1E LTR MaLR 0 542 356 2525 223 55 53 chr11 73941293 73942097 -74841375 - MER21B LTR ERV1 -58 805 1 1140 289 35 23 chr11 73942116 73942511 -74840961 - MLT1E LTR MaLR -193 400 1 664 241 138 32 chr11 73943147 73943563 -74839909 + MLT1C LTR MaLR 1 459 -8 259 284 57 0 chr11 73944492 73944580 -74838892 + MIR SINE MIR 56 148 -114 353 233 97 10 chr11 73945693 73945796 -74837676 - MIR SINE MIR -130 132 21 2061 92 11 0 chr11 73946887 73947160 -74836312 - AluY SINE Alu -35 276 1 214 349 221 10 chr11 73948380 73948764 -74834708 + L2 LINE L2 2816 3280 -33 1227 72 0 0 chr11 73948808 73948988 -74834484 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 741 137 0 0 chr11 73949002 73949133 -74834339 + (TGGA)n Simple_repeat Simple_repeat 3 133 0 1571 257 46 19 chr11 73949650 73950082 -74833390 + MLT1J2 LTR MaLR 5 448 -2 382 340 116 22 chr11 73950749 73950981 -74832491 + MIR SINE MIR 1 254 -8 258 240 40 13 chr11 73951296 73951371 -74832101 + L3 LINE CR1 1161 1237 -340 * 285 319 80 32 chr11 73951370 73951558 -74831914 - L2 LINE L2 0 3313 3117 390 296 12 72 chr11 73951558 73951808 -74831664 - L2 LINE L2 -105 3208 2974 480 258 31 0 chr11 73951847 73951975 -74831497 + LTR33A LTR ERVL 57 188 -335 1141 247 56 50 chr11 73952505 73952534 -74830938 + MLT2C2 LTR ERVL 1 28 -436 2501 118 16 16 chr11 73952534 73952898 -74830574 + THE1B LTR MaLR 1 364 0 1141 247 56 50 chr11 73952898 73953329 -74830143 + MLT2C2 LTR ERVL 28 464 0 3456 60 30 5 chr11 73953904 73954337 -74829135 - MLT2A1 LTR ERVL 0 444 1 452 192 125 0 chr11 73955474 73955578 -74827894 - Tigger7 DNA MER2_type 0 2487 2371 21 0 0 0 chr11 73956315 73956336 -74827136 + GC_rich Low_complexity Low_complexity 1 21 0 769 256 54 95 chr11 73957157 73957192 -74826280 + L1MC4 LINE L1 7560 7595 -447 2209 92 23 7 chr11 73957192 73957496 -74825976 - AluSx SINE Alu -3 309 1 769 256 54 95 chr11 73957496 73957781 -74825691 + L1MC4 LINE L1 7595 7854 -188 2170 115 13 0 chr11 73957781 73958086 -74825386 - AluSx SINE Alu -3 309 1 769 256 54 95 chr11 73958086 73958267 -74825205 + L1MC4 LINE L1 7854 8041 -1 404 283 125 34 chr11 73958551 73958848 -74824624 - MER102b DNA MER1_type -16 325 2 263 331 71 16 chr11 73959723 73959850 -74823622 + MIR3 SINE MIR 45 178 -30 247 327 80 0 chr11 73961112 73961225 -74822247 - MIR SINE MIR -58 204 83 182 61 0 61 chr11 73963859 73963892 -74819580 + (AGGGGG)n Simple_repeat Simple_repeat 5 35 0 878 130 0 0 chr11 73965630 73965788 -74817684 - AluJb SINE Alu 0 317 160 1048 178 0 0 chr11 73965819 73965988 -74817484 - AluJb SINE Alu -143 169 1 1338 163 0 120 chr11 73965995 73966321 -74817151 - AluJo SINE Alu -20 292 6 604 236 74 69 chr11 73966415 73966890 -74816582 - MLT1H LTR MaLR 0 549 2 918 206 96 22 chr11 73966896 73967168 -74816304 + MLT1J LTR MaLR 143 434 -77 411 303 33 0 chr11 73967651 73967773 -74815699 - L2 LINE L2 0 3313 3188 311 278 116 16 chr11 73967855 73968004 -74815468 + MIR SINE MIR 25 183 -52 423 350 11 0 chr11 73968564 73968741 -74814731 + (CA)n Simple_repeat Simple_repeat 1 179 0 254 348 9 9 chr11 73968725 73968837 -74814635 + (CACG)n Simple_repeat Simple_repeat 4 115 0 * 212 359 199 0 chr11 73969834 73969990 -74813482 + MIR SINE MIR 55 241 -21 180 327 27 27 chr11 73970261 73970371 -74813101 + MIR SINE MIR 19 128 -80 200 379 93 31 chr11 73971175 73971336 -74812136 + L2 LINE L2 3100 3270 -2 248 236 72 107 chr11 73971604 73971833 -74811639 + MIR3 SINE MIR 3 226 -36 1688 156 77 37 chr11 73971935 73972340 -74811132 - Tigger2 DNA MER2_type 0 2718 2298 339 186 29 0 chr11 73972341 73972443 -74811029 + GA-rich Low_complexity Low_complexity 1 105 0 777 141 126 0 chr11 73972967 73973102 -74810370 + AluJb SINE Alu 160 311 -1 2286 98 0 3 chr11 73973171 73973478 -74809994 - AluSx SINE Alu -6 306 1 277 366 14 0 chr11 73973523 73973665 -74809807 + HERV16 LTR ERVL 1252 1395 -3601 201 121 0 0 chr11 73973867 73973900 -74809572 + (T)n Simple_repeat Simple_repeat 1 33 0 2304 96 0 10 chr11 73973902 73974215 -74809257 - AluSg SINE Alu 0 310 1 1307 310 76 13 chr11 73974272 73974876 -74808596 + HERV16 LTR ERVL 1675 2316 -3448 2126 135 3 0 chr11 73975008 73975319 -74808153 + AluSx SINE Alu 1 312 0 3701 281 116 19 chr11 73975327 73976028 -74807444 + HERV16 LTR ERVL 2624 3255 -2509 2196 111 3 9 chr11 73976028 73976343 -74807129 + AluSq SINE Alu 1 313 0 2362 94 0 0 chr11 73976347 73976655 -74806817 + AluSg SINE Alu 3 310 0 3701 281 116 19 chr11 73976655 73977573 -74805899 + HERV16 LTR ERVL 3257 4407 -1357 216 0 0 0 chr11 73977577 73977601 -74805871 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1297 86 0 17 chr11 73977633 73977807 -74805665 - AluSg SINE Alu -139 171 1 800 249 33 12 chr11 73977810 73978051 -74805421 + HERV16 LTR ERVL 4403 4648 -1116 314 346 10 55 chr11 73978198 73978334 -74805138 + HERV16 LTR ERVL 5068 5194 -460 1519 120 5 0 chr11 73978334 73978551 -74804921 + AluY SINE Alu 84 301 -10 314 346 10 55 chr11 73978551 73978616 -74804856 + HERV16 LTR ERVL 5194 5260 -394 1977 96 0 7 chr11 73978909 73979179 -74804293 + AluSx SINE Alu 25 292 -20 241 329 43 21 chr11 73980059 73980199 -74803273 + MLT2E LTR ERVL 34 176 -452 221 211 0 39 chr11 73980438 73980490 -74802982 + GA-rich Low_complexity Low_complexity 5 54 0 1839 120 29 0 chr11 73980526 73980800 -74802672 + AluSx SINE Alu 1 282 -30 260 164 0 30 chr11 73980884 73980951 -74802521 + L1MC5 LINE L1 7618 7682 -279 342 337 126 34 chr11 73981407 73981684 -74801788 + L2 LINE L2 2784 3034 -279 2120 175 148 7 chr11 73981684 73982124 -74801348 - MLT1D LTR MaLR 0 505 4 342 337 126 34 chr11 73982124 73982323 -74801149 + L2 LINE L2 3034 3308 -5 231 114 0 0 chr11 73982335 73982370 -74801102 + (TGGG)n Simple_repeat Simple_repeat 2 36 0 1251 79 0 0 chr11 73982373 73982550 -74800922 + (TGGA)n Simple_repeat Simple_repeat 3 179 0 205 152 0 0 chr11 73982553 73982586 -74800886 + (TGGG)n Simple_repeat Simple_repeat 2 34 0 1449 154 15 27 chr11 73982686 73982946 -74800526 - AluJb SINE Alu -55 257 1 1641 145 3 68 chr11 73982955 73983265 -74800207 - AluJo SINE Alu -22 290 1 2220 90 0 35 chr11 73983293 73983604 -74799868 + AluSc SINE Alu 1 300 -9 596 354 56 43 chr11 73983719 73984157 -74799315 - HAL1b LINE L1 -1080 268 25 204 158 0 0 chr11 73984157 73984195 -74799277 + CT-rich Low_complexity Low_complexity 1 38 0 556 234 40 0 chr11 73984195 73984319 -74799153 - FLAM_A SINE Alu -1 141 13 333 366 71 43 chr11 73984331 73984612 -74798860 - HAL1 LINE L1 -1245 1262 974 2324 106 0 0 chr11 73984661 73984972 -74798500 - AluSp SINE Alu -2 311 1 426 233 42 0 chr11 73985973 73986093 -74797379 + MER91A DNA MER1_type 1 125 -71 2505 47 3 0 chr11 73986331 73986631 -74796841 + AluY SINE Alu 1 301 -10 391 276 105 61 chr11 73986873 73987054 -74796418 + L2 LINE L2 2911 3099 -173 274 271 84 47 chr11 73987075 73987182 -74796290 - L2 LINE L2 0 3272 3162 198 313 16 16 chr11 73987223 73987287 -74796185 + L2 LINE L2 3239 3302 -11 252 324 72 29 chr11 73987998 73988373 -74795099 + L2 LINE L2 2624 3077 -236 1635 241 0 3 chr11 73988392 73988765 -74794707 - L1MB7 LINE L1 -19 6165 5794 273 29 0 0 chr11 73988833 73988867 -74794605 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 963 151 0 0 chr11 73988898 73989044 -74794428 + AluJb SINE Alu 165 310 -2 294 188 47 24 chr11 73989095 73989180 -74794292 - FRAM SINE Alu -14 152 66 407 245 109 5 chr11 73989409 73989593 -74793879 + LTR16C LTR ERVL 257 459 -32 301 327 91 0 chr11 73990186 73990296 -74793176 + MIR SINE MIR 31 150 -112 1776 152 0 3 chr11 73990364 73990647 -74792825 - AluJo SINE Alu 0 312 31 294 280 9 56 chr11 73990782 73990889 -74792583 - MIR SINE MIR -106 156 55 213 281 0 18 chr11 73990978 73991035 -74792437 + L2 LINE L2 3203 3258 -14 231 36 0 0 chr11 73991037 73991065 -74792407 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 214 302 48 63 chr11 73991326 73991452 -74792020 + MIR3 SINE MIR 40 163 -45 1123 217 84 131 chr11 73991958 73992080 -74791392 - MER41C LTR ERV1 0 554 428 2430 78 0 0 chr11 73992080 73992388 -74791084 + AluY SINE Alu 1 308 -3 2320 97 7 0 chr11 73992396 73992704 -74790768 + AluSx SINE Alu 1 310 -2 1123 217 84 131 chr11 73992704 73992921 -74790551 - MER41C LTR ERV1 -133 421 195 1933 128 38 0 chr11 73992921 73993210 -74790262 + AluSg SINE Alu 1 300 -10 1537 186 53 0 chr11 73993214 73993499 -74789973 - AluJb SINE Alu -11 301 2 1123 217 84 131 chr11 73993499 73993725 -74789747 - MER41C LTR ERV1 -362 192 1 2833 77 16 16 chr11 73993754 73994129 -74789343 - THE1C LTR MaLR 0 375 1 1893 223 21 23 chr11 73994359 73994829 -74788643 - MER74A LTR ERVL -89 469 1 324 237 232 24 chr11 73994829 73995026 -74788446 + L1ME LINE L1 5270 5515 -647 2887 150 31 0 chr11 73995026 73995479 -74787993 - LTR24 LTR ERV1 0 467 1 324 237 232 24 chr11 73995479 73995492 -74787980 + L1ME LINE L1 5515 5524 -638 326 212 93 8 chr11 73995601 73995719 -74787753 - L1MEd LINE L1 -4757 1553 1426 759 202 56 0 chr11 73996036 73996234 -74787238 + MER74B LTR ERVL 414 622 0 751 291 86 14 chr11 73996238 73996769 -74786703 - L1MEd LINE L1 -4873 1246 743 304 243 14 14 chr11 73996832 73996906 -74786566 - L1MDa LINE L1 -4014 2526 2453 237 292 0 0 chr11 73996936 73997001 -74786471 - HsTC2 DNA Tc2 -1344 554 490 235 231 0 0 chr11 73997006 73997058 -74786414 - HsTC2 DNA Tc2 -1606 292 241 207 69 0 0 chr11 73997058 73997087 -74786385 + (TTTAA)n Simple_repeat Simple_repeat 3 31 0 833 148 0 0 chr11 73997090 73997212 -74786260 - AluSg/x SINE Alu -30 280 159 385 274 98 6 chr11 73997643 73997807 -74785665 - MLT1I LTR MaLR -3 406 228 2041 106 0 11 chr11 73997852 73998172 -74785300 - AluSg SINE Alu 0 319 3 5842 66 96 0 chr11 73999065 73999819 -74783653 - LTR12 LTR ERV1 0 826 1 5292 89 14 20 chr11 74000076 74000940 -74782532 - L1PA13 LINE L1 0 6163 5305 3105 160 5 0 chr11 74000939 74001532 -74781940 + L1PA13 LINE L1 4688 5283 -863 * 21 0 0 0 chr11 74001863 74001884 -74781588 + AT_rich Low_complexity Low_complexity 1 21 0 186 239 0 0 chr11 74003682 74003728 -74779744 - L2 LINE L2 -21 3251 3206 194 232 58 136 chr11 74003972 74004002 -74779470 - MIR3 SINE MIR -25 183 152 1533 151 62 29 chr11 74004002 74004274 -74779198 - AluJb SINE Alu -6 306 26 194 232 58 136 chr11 74004274 74004398 -74779074 - MIR3 SINE MIR -56 152 41 237 132 0 0 chr11 74006641 74006679 -74776793 + (TG)n Simple_repeat Simple_repeat 1 38 0 353 316 99 6 chr11 74006769 74006940 -74776532 - MIR SINE MIR -29 233 47 533 161 57 0 chr11 74007658 74007782 -74775690 - MER44D DNA MER2_type -97 508 323 1996 121 0 0 chr11 74007794 74008076 -74775396 - AluSx SINE Alu -30 282 1 1257 219 7 20 chr11 74008077 74008369 -74775103 - MER44D DNA MER2_type -356 349 62 202 228 38 51 chr11 74008369 74008448 -74775024 - MIR SINE MIR -153 109 32 324 343 96 6 chr11 74009152 74009318 -74774154 - MER5A DNA MER1_type 0 189 9 * 356 274 92 13 chr11 74009311 74009464 -74774008 + L2 LINE L2 2898 3062 -210 1848 138 3 7 chr11 74009565 74009875 -74773597 - AluJb SINE Alu 0 309 1 1662 170 18 4 chr11 74010680 74010957 -74772515 + AluJo SINE Alu 6 286 -26 201 244 0 0 chr11 74011337 74011378 -74772094 + GA-rich Low_complexity Low_complexity 3 43 0 1304 221 174 35 chr11 74011482 74011908 -74771564 - MER77 LTR ERV1 -67 538 54 292 315 11 0 chr11 74011951 74012040 -74771432 - MER81 DNA DNA -1 113 24 502 313 130 20 chr11 74012495 74012741 -74770731 - L1 LINE L1 -1736 4410 4138 251 337 53 48 chr11 74012751 74013166 -74770306 - L1 LINE L1 -2316 3830 3414 810 337 73 24 chr11 74013212 74013594 -74769878 - L1 LINE L1 -2797 3349 2936 987 46 77 15 chr11 74013596 74013726 -74769746 - MER85 DNA T2_type 0 139 2 795 147 38 131 chr11 74013820 74013910 -74769562 - MER33 DNA MER1_type -2261 363 266 2727 100 58 7 chr11 74013910 74014320 -74769152 + L1PA13 LINE L1 5733 6163 0 795 147 38 131 chr11 74014320 74014561 -74768911 - MER33 DNA MER1_type -2358 266 23 304 245 122 93 chr11 74014570 74014709 -74768763 + L2 LINE L2 3123 3265 -7 1504 169 72 6 chr11 74014713 74015044 -74768428 - MLT1B LTR MaLR -37 353 1 657 303 66 54 chr11 74015447 74015932 -74767540 + MLT1J LTR MaLR 2 492 -19 237 300 0 14 chr11 74015970 74016040 -74767432 - L2 LINE L2 -2 3270 3202 2227 109 0 3 chr11 74016317 74016620 -74766852 + AluSx SINE Alu 1 302 -10 440 237 10 0 chr11 74016797 74016894 -74766578 + MER81 DNA DNA 17 114 0 555 139 57 22 chr11 74020135 74020291 -74763181 + LTR45B LTR ERV1 318 517 -8 1789 177 0 0 chr11 74020347 74020646 -74762826 + AluJb SINE Alu 2 300 -12 2296 93 3 3 chr11 74020890 74021200 -74762272 + AluSg SINE Alu 1 310 0 245 333 9 0 chr11 74021346 74021451 -74762021 + L2 LINE L2 2978 3083 -189 1794 269 62 15 chr11 74021484 74022015 -74761457 - MER82 DNA MER2_type 0 653 98 2630 169 92 14 chr11 74022061 74022564 -74760908 + MLT1F LTR MaLR 1 542 0 252 338 150 14 chr11 74022897 74023104 -74760368 - MIR SINE MIR 0 262 28 326 282 84 49 chr11 74023463 74023605 -74759867 - L2 LINE L2 0 3313 3167 216 254 79 61 chr11 74023578 74023692 -74759780 + MIR SINE MIR 33 148 -60 * 1150 139 56 47 chr11 74023702 74023917 -74759555 + MER20 DNA MER1_type 1 217 -2 2381 127 25 6 chr11 74024540 74024894 -74758578 - THE1B LTR MaLR -3 361 1 210 291 0 18 chr11 74025294 74025349 -74758123 - L2 LINE L2 0 3272 3219 204 290 32 0 chr11 74025669 74025731 -74757741 + MIR SINE MIR 50 113 -149 2113 115 110 86 chr11 74026003 74026082 -74757390 + MSTA LTR MaLR 1 77 -351 1772 127 0 37 chr11 74026082 74026404 -74757068 + AluY SINE Alu 1 310 -1 2113 115 110 86 chr11 74026404 74026742 -74756730 + MSTA LTR MaLR 77 428 0 3050 211 50 43 chr11 74026947 74028123 -74755349 + L1ME1 LINE L1 4970 6160 -6 334 333 57 7 chr11 74028279 74028420 -74755052 - MIR SINE MIR -113 149 2 208 312 65 65 chr11 74028420 74028555 -74754917 - MIR3 SINE MIR -30 178 44 321 301 105 8 chr11 74029284 74029417 -74754055 + MIR SINE MIR 92 237 -25 1074 133 0 2 chr11 74029838 74030365 -74753107 + (TGGA)n Simple_repeat Simple_repeat 1 526 0 391 299 120 16 chr11 74030707 74030891 -74752581 + MIR SINE MIR 46 248 -14 183 139 0 0 chr11 74030901 74030937 -74752535 + (ATTG)n Simple_repeat Simple_repeat 2 37 0 391 283 196 34 chr11 74031274 74031652 -74751820 + L2 LINE L2 2834 3272 0 1072 254 78 21 chr11 74031979 74032416 -74751056 - MLT1C LTR MaLR 0 467 6 285 376 30 0 chr11 74036050 74036183 -74747289 - MIR SINE MIR -17 245 109 406 239 44 18 chr11 74036335 74036448 -74747024 - MIR SINE MIR -118 144 29 1444 238 89 7 chr11 74036619 74037044 -74746428 + MLT1C LTR MaLR 8 467 0 1019 231 105 36 chr11 74040281 74040701 -74742771 - MLT1C LTR MaLR -18 449 1 627 254 57 0 chr11 74040720 74040897 -74742575 + MER5A DNA MER1_type 3 189 0 241 314 42 0 chr11 74041491 74041609 -74741863 + Charlie4 DNA MER1_type 1772 1894 -67 1839 134 0 14 chr11 74041627 74041911 -74741561 + AluSq SINE Alu 34 313 0 1973 125 6 28 chr11 74042155 74042474 -74740998 + AluSq SINE Alu 1 312 -1 320 231 130 19 chr11 74043580 74043688 -74739784 + MIR SINE MIR 33 152 -110 282 305 24 0 chr11 74044129 74044211 -74739261 + MIR SINE MIR 62 145 -117 439 292 111 6 chr11 74045428 74045599 -74737873 + MER5A DNA MER1_type 1 189 0 180 135 0 0 chr11 74046462 74046499 -74736973 + (CAGCC)n Simple_repeat Simple_repeat 5 41 0 275 310 219 5 chr11 74046579 74046766 -74736706 + L2 LINE L2 1611 1837 -1477 759 312 114 13 chr11 74047217 74047933 -74735539 - L1ME3A LINE L1 -228 5942 5149 370 340 99 9 chr11 74047945 74048157 -74735315 - L1ME3A LINE L1 -1101 5045 4815 390 313 59 23 chr11 74048283 74048539 -74734933 - L1ME3A LINE L1 -1366 4780 4516 1668 202 68 22 chr11 74048651 74049106 -74734366 + MLT1E3 LTR MaLR 144 619 -5 575 326 38 84 chr11 74049111 74049339 -74734133 - L1ME3A LINE L1 -1637 4509 4272 1819 171 16 0 chr11 74049339 74049643 -74733829 + AluJo SINE Alu 1 309 -3 575 326 38 84 chr11 74049643 74049684 -74733788 - L1ME3A LINE L1 -1874 4272 4231 2559 11 0 0 chr11 74049684 74049970 -74733502 - AluYb8 SINE Alu -3 315 30 575 326 38 84 chr11 74049970 74050116 -74733356 - L1ME3A LINE L1 -1915 4231 4112 842 295 38 41 chr11 74050320 74050879 -74732593 + L1MC4 LINE L1 6460 7063 -798 380 315 153 12 chr11 74050882 74051209 -74732263 + L1MC4 LINE L1 7242 7614 -428 195 129 0 0 chr11 74051379 74051410 -74732062 + (TTA)n Simple_repeat Simple_repeat 2 32 0 292 288 27 10 chr11 74051949 74052095 -74731377 - MER91A DNA MER1_type -1 195 2 341 333 23 35 chr11 74054237 74054411 -74729061 - MIR SINE MIR -90 172 1 256 284 12 12 chr11 74055781 74055862 -74727610 + MIR3 SINE MIR 91 171 -37 232 208 0 19 chr11 74057421 74057474 -74725998 + MER6B DNA MER2_type 26 77 -199 * 423 240 40 0 chr11 74057440 74057540 -74725932 - MER6B DNA MER2_type -172 104 1 212 324 0 27 chr11 74058262 74058373 -74725099 + (TATATG)n Simple_repeat Simple_repeat 4 111 0 * 412 343 0 6 chr11 74058310 74058491 -74724981 + (TG)n Simple_repeat Simple_repeat 1 180 0 203 264 0 57 chr11 74059662 74059768 -74723704 + (CCCCAG)n Simple_repeat Simple_repeat 1 100 0 208 272 62 25 chr11 74060387 74060468 -74723004 - MIR SINE MIR -55 153 70 237 323 53 23 chr11 74062392 74062525 -74720947 + L1ME LINE L1 5644 5780 -341 21 0 0 0 chr11 74062570 74062591 -74720881 + AT_rich Low_complexity Low_complexity 1 21 0 536 226 36 0 chr11 74062839 74062976 -74720496 - MER3 DNA MER1_type -3 206 65 378 312 0 32 chr11 74063361 74063547 -74719925 + (CAGG)n Simple_repeat Simple_repeat 1 180 0 210 342 0 37 chr11 74064319 74064506 -74718966 + (CAGG)n Simple_repeat Simple_repeat 1 180 0 345 88 82 71 chr11 74064561 74064731 -74718741 + (CAGGG)n Simple_repeat Simple_repeat 3 174 0 1376 219 133 3 chr11 74065705 74066006 -74717466 - MER2 DNA MER2_type -2 342 3 1303 153 52 4 chr11 74067155 74067404 -74716068 + MLT1B LTR MaLR 1 261 -129 297 157 14 14 chr11 74067386 74067456 -74716016 + MLT1B LTR MaLR 192 261 -129 * 277 115 19 0 chr11 74067456 74067508 -74715964 + MLT1B LTR MaLR 209 261 -129 * 567 222 41 52 chr11 74067490 74067684 -74715788 + MLT1B LTR MaLR 192 383 -7 190 352 88 11 chr11 74068113 74068204 -74715268 + MER5B DNA MER1_type 50 147 -31 2272 112 0 3 chr11 74070942 74071254 -74712218 + AluSx SINE Alu 2 312 0 223 189 19 19 chr11 74071326 74071379 -74712093 - L3 LINE CR1 -106 1471 1419 184 253 0 30 chr11 74073411 74073510 -74709962 + A-rich Low_complexity Low_complexity 3 98 0 361 296 41 63 chr11 74074365 74074635 -74708837 - MER68 LTR ERV1 -250 312 49 541 199 15 15 chr11 74076082 74076477 -74706995 + (CA)n Simple_repeat Simple_repeat 1 395 0 297 248 18 28 chr11 74076943 74077052 -74706420 + G-rich Low_complexity Low_complexity 3 110 0 1515 204 108 3 chr11 74078944 74079322 -74704150 + MSTB LTR MaLR 3 420 -6 213 65 0 0 chr11 74079322 74079353 -74704119 + (CA)n Simple_repeat Simple_repeat 1 31 0 350 279 80 37 chr11 74080891 74081389 -74702083 + ERVL LTR ERVL 3597 4196 -1568 401 339 41 0 chr11 74082042 74082237 -74701235 + ERVL LTR ERVL 5082 5284 -370 298 230 22 79 chr11 74082765 74082904 -74700568 + LTR50 LTR ERVL 453 583 -212 190 387 25 8 chr11 74083289 74083408 -74700064 + MIR SINE MIR 21 141 -67 283 343 50 9 chr11 74083832 74084022 -74699450 + MIR SINE MIR 24 219 -43 2190 107 0 0 chr11 74084148 74084446 -74699026 + AluSx SINE Alu 9 306 -6 2146 107 7 0 chr11 74084447 74084755 -74698717 + AluY SINE Alu 1 310 -1 401 305 9 77 chr11 74087501 74087734 -74695738 - L1ME1 LINE L1 -8 6158 5942 509 346 56 26 chr11 74087850 74088153 -74695319 - MLT1K LTR MaLR -65 523 212 2103 120 0 0 chr11 74088259 74088572 -74694900 + AluSx SINE Alu 1 313 0 2130 158 18 38 chr11 74088839 74089237 -74694235 - MLT1B LTR MaLR 0 390 1 954 293 130 11 chr11 74089442 74089818 -74693654 + MLT1E LTR MaLR 1 421 -172 320 226 183 9 chr11 74090025 74090069 -74693403 - MLT1K LTR MaLR -3 585 550 297 0 0 0 chr11 74090069 74090102 -74693370 + (CA)n Simple_repeat Simple_repeat 2 34 0 320 226 183 9 chr11 74090102 74090172 -74693300 - MLT1K LTR MaLR -38 550 451 209 350 146 0 chr11 74090202 74090305 -74693167 - L2 LINE L2 -3 3310 3193 236 377 57 0 chr11 74090924 74091046 -74692426 - MIR3 SINE MIR -65 143 15 399 21 0 0 chr11 74092387 74092435 -74691037 + (CA)n Simple_repeat Simple_repeat 2 49 0 2270 94 7 0 chr11 74092506 74092804 -74690668 + AluSx SINE Alu 1 300 -12 2323 82 0 3 chr11 74092828 74093134 -74690338 + AluY SINE Alu 3 307 -4 258 284 9 26 chr11 74093246 74093362 -74690110 + L1ME4a LINE L1 6007 6120 -1 642 246 218 25 chr11 74094102 74094496 -74688976 - MLT1D LTR MaLR -35 470 1 197 273 30 45 chr11 74094530 74094596 -74688876 - L2 LINE L2 0 3313 3249 1945 100 0 71 chr11 74094596 74094930 -74688542 - AluSg SINE Alu 0 312 1 1236 137 41 24 chr11 74094933 74095302 -74688170 - LTR46 LTR ERV1 0 460 1 227 276 17 0 chr11 74095465 74095523 -74687949 - L2 LINE L2 -13 3300 3242 317 291 117 51 chr11 74095689 74096022 -74687450 + L2 LINE L2 1328 1682 -1632 2277 88 3 0 chr11 74096245 74096541 -74686931 + AluSx SINE Alu 1 297 -15 273 362 43 0 chr11 74096615 74096731 -74686741 + L2 LINE L2 3138 3258 -14 242 203 23 38 chr11 74097448 74097581 -74685891 + (TATG)n Simple_repeat Simple_repeat 2 132 0 442 360 98 62 chr11 74097691 74098241 -74685231 + L1MEd LINE L1 48 617 -5502 2060 122 3 3 chr11 74098349 74098645 -74684827 + AluSx SINE Alu 1 296 -16 949 302 103 46 chr11 74098872 74100143 -74683329 + L1M4 LINE L1 2717 4074 -2072 2280 107 0 0 chr11 74100143 74100453 -74683019 + AluSg SINE Alu 1 310 0 949 302 103 46 chr11 74100453 74100565 -74682907 + L1M4 LINE L1 4074 4178 -1968 2303 284 103 42 chr11 74100682 74101940 -74681532 + L1MEc LINE L1 10 1190 -5027 2000 117 4 0 chr11 74101940 74102258 -74681214 + AluY SINE Alu 1 319 0 2303 284 103 42 chr11 74102258 74102388 -74681084 + L1MEc LINE L1 1190 1311 -4906 2081 148 0 0 chr11 74102388 74102699 -74680773 + AluJb SINE Alu 1 311 -1 2303 284 103 42 chr11 74102699 74102802 -74680670 + L1MEc LINE L1 1311 1444 -4773 389 345 34 19 chr11 74305870 74306076 -74477396 - MIR SINE MIR -15 247 39 286 218 101 56 chr11 74307447 74307602 -74475870 + MIR SINE MIR 3 154 -54 377 141 14 0 chr11 74308999 74309070 -74474402 + AluS SINE Alu 231 302 0 321 172 0 0 chr11 74309153 74309217 -74474255 + CT-rich Low_complexity Low_complexity 5 68 0 2124 118 7 7 chr11 74309234 74309531 -74473941 - AluSx SINE Alu -13 299 3 2245 110 0 13 chr11 74309684 74310018 -74473454 - AluSx SINE Alu 0 312 1 1204 214 4 0 chr11 74310038 74310267 -74473205 + Tigger7 DNA MER2_type 2 231 -474 430 149 23 23 chr11 74310282 74310369 -74473103 + Tigger7 DNA MER2_type 2391 2477 -10 264 242 16 0 chr11 74311441 74311503 -74471969 + MIR SINE MIR 90 152 -56 716 135 43 0 chr11 74312205 74312346 -74471126 - L1MA5 LINE L1 -3 6297 6151 201 39 0 0 chr11 74313366 74313392 -74470080 + (CA)n Simple_repeat Simple_repeat 2 27 0 249 197 0 16 chr11 74314177 74314238 -74469234 + G-rich Low_complexity Low_complexity 1 60 0 1103 59 7 7 chr11 74315199 74315335 -74468137 - AluY SINE Alu -175 136 1 465 345 109 34 chr11 74315512 74316007 -74467465 + L1ME3 LINE L1 3980 4511 -1635 458 318 41 64 chr11 74316012 74316138 -74467334 + MIR SINE MIR 3 123 -139 2380 107 3 0 chr11 74316138 74316447 -74467025 - AluSg SINE Alu 0 310 1 458 318 41 64 chr11 74316447 74316540 -74466932 + MIR SINE MIR 123 217 -45 2257 122 0 0 chr11 74316561 74316857 -74466615 - AluSx SINE Alu -16 296 1 1475 290 131 27 chr11 74317015 74317420 -74466052 + L1ME3 LINE L1 5240 5601 -561 2390 99 3 0 chr11 74317420 74317724 -74465748 + AluSp SINE Alu 1 305 -8 1475 290 131 27 chr11 74317724 74317735 -74465737 + L1ME3 LINE L1 5601 5609 -553 1601 188 13 13 chr11 74317735 74318038 -74465434 + AluJo SINE Alu 1 303 -9 1475 290 131 27 chr11 74318038 74318078 -74465394 + L1ME3 LINE L1 5609 5643 -519 1884 195 8 8 chr11 74318078 74318452 -74465020 + MLT1A2 LTR MaLR 1 374 0 1475 290 131 27 chr11 74318452 74318830 -74464642 + L1ME3 LINE L1 5643 6159 -3 2618 68 0 0 chr11 74318857 74319166 -74464306 + AluY SINE Alu 1 309 -2 196 338 12 0 chr11 74319320 74319400 -74464072 + L2 LINE L2 2850 2930 -342 1574 193 17 10 chr11 74319537 74319659 -74463813 + AluJb SINE Alu 1 121 -191 198 0 0 0 chr11 74319659 74319681 -74463791 + (TAA)n Simple_repeat Simple_repeat 2 23 0 1574 193 17 10 chr11 74319681 74319858 -74463614 + AluJb SINE Alu 121 302 -10 211 312 39 0 chr11 74319871 74319948 -74463524 + L2 LINE L2 3188 3267 -5 1684 190 0 32 chr11 74320142 74320452 -74463020 + AluJo SINE Alu 1 300 -12 1362 214 132 42 chr11 74320453 74320930 -74462542 + L1ME1 LINE L1 5575 6094 -72 2288 134 0 0 chr11 74321081 74321394 -74462078 + AluSq SINE Alu 1 313 0 2105 181 18 88 chr11 74321577 74322079 -74461393 + MLT2B2 LTR ERVL 1 462 -53 246 32 0 0 chr11 74322079 74322110 -74461362 + (TG)n Simple_repeat Simple_repeat 2 32 0 2105 181 18 88 chr11 74322110 74322161 -74461311 + MLT2B2 LTR ERVL 462 515 0 245 257 200 0 chr11 74322163 74322268 -74461204 + L1ME LINE L1 5739 5864 -306 1646 93 0 0 chr11 74324054 74324258 -74459214 + AluSx SINE Alu 4 207 -105 844 95 0 0 chr11 74324266 74324371 -74459101 + AluSp SINE Alu 113 217 -96 347 31 0 62 chr11 74325912 74325977 -74457495 + (GGA)n Simple_repeat Simple_repeat 1 61 0 305 265 92 105 chr11 74326277 74326389 -74457083 + MIR SINE MIR 25 137 -125 2333 122 0 0 chr11 74326389 74326700 -74456772 + AluSx SINE Alu 1 311 -1 305 265 92 105 chr11 74326700 74326825 -74456647 + MIR SINE MIR 137 259 -3 300 333 62 21 chr11 74326830 74327022 -74456450 + L3 LINE CR1 1176 1375 -202 2430 92 3 6 chr11 74328070 74328384 -74455088 - AluSq SINE Alu 0 313 1 2073 132 31 0 chr11 74328460 74328747 -74454725 - AluSx SINE Alu -16 296 1 326 232 46 12 chr11 74329500 74329608 -74453864 - MLT1I LTR MaLR 0 426 317 362 286 43 38 chr11 74329653 74329838 -74453634 - MLT1I LTR MaLR -190 219 34 384 22 0 0 chr11 74330037 74330082 -74453390 + (CA)n Simple_repeat Simple_repeat 1 45 0 642 296 30 0 chr11 74330107 74330310 -74453162 + MIR SINE MIR 11 219 -43 230 235 12 59 chr11 74330600 74330685 -74452787 + MLT1H LTR MaLR 84 164 -385 4091 82 13 20 chr11 74330832 74331438 -74452034 - LTR10E LTR ERV1 -31 602 1 291 220 55 37 chr11 74331485 74331594 -74451878 + MLT1H LTR MaLR 438 548 -1 12424 113 31 123 chr11 74331672 74332336 -74451136 + Tigger1 DNA MER2_type 2 725 -1693 1830 54 0 0 chr11 74332336 74332574 -74450898 + L1PA4 LINE L1 5917 6155 0 12424 113 31 123 chr11 74332574 74333343 -74450129 + Tigger1 DNA MER2_type 725 1563 -855 1832 155 28 10 chr11 74333343 74333634 -74449838 - AluJb SINE Alu -16 296 1 12424 113 31 123 chr11 74333634 74333851 -74449621 + Tigger1 DNA MER2_type 1563 1798 -620 2321 104 7 3 chr11 74333851 74334159 -74449313 - AluSc SINE Alu 0 309 1 12424 113 31 123 chr11 74334159 74334788 -74448684 + Tigger1 DNA MER2_type 1798 2483 65 2186 106 23 0 chr11 74334788 74335090 -74448382 + AluSc SINE Alu 1 309 0 12424 113 31 123 chr11 74335090 74335346 -74448126 + Tigger1 DNA MER2_type 2483 2290 -128 1955 124 39 0 chr11 74335346 74335629 -74447843 - AluSx SINE Alu -18 294 1 12424 113 31 123 chr11 74335629 74335749 -74447723 + Tigger1 DNA MER2_type 2289 2418 0 326 293 0 57 chr11 74335831 74335954 -74447518 + L1ME4a LINE L1 5922 6037 -84 2279 128 0 0 chr11 74336152 74336464 -74447008 - AluSx SINE Alu 0 312 1 1135 307 34 30 chr11 74337532 74337918 -74445554 + L1ME2 LINE L1 5561 5951 -213 2157 117 3 0 chr11 74337918 74338238 -74445234 + AluSq SINE Alu 1 313 0 1135 307 34 30 chr11 74338238 74338375 -74445097 + L1ME2 LINE L1 5951 6086 -78 517 178 34 25 chr11 74338425 74338543 -74444929 + MER20 DNA MER1_type 98 216 -3 243 265 84 0 chr11 74338585 74338608 -74444864 + L1ME3 LINE L1 6070 6090 -72 2094 125 7 0 chr11 74338608 74338896 -74444576 - AluSx SINE Alu -22 290 1 243 265 84 0 chr11 74338896 74338955 -74444517 + L1ME3 LINE L1 6090 6159 -3 362 267 52 44 chr11 74338970 74339105 -74444367 + MIR SINE MIR 57 192 -70 191 311 0 33 chr11 74340653 74340714 -74442758 + L2 LINE L2 3235 3293 -20 2324 125 0 0 chr11 74340755 74341060 -74442412 - AluSq SINE Alu -8 305 1 893 242 42 34 chr11 74341568 74341832 -74441640 + MLT2B1 LTR ERVL 2 267 -253 478 329 34 44 chr11 74341837 74342135 -74441337 - MLT1K LTR MaLR -284 304 10 3614 205 4 4 chr11 74342675 74342710 -74440762 - L1MB3 LINE L1 -7 6176 6142 2463 96 0 0 chr11 74342710 74343012 -74440460 - AluSx SINE Alu -10 302 1 3614 205 4 4 chr11 74343012 74343709 -74439763 - L1MB3 LINE L1 -40 6143 5444 255 235 0 0 chr11 74343715 74343766 -74439706 - L1M3 LINE L1 -677 5494 5444 255 235 0 0 chr11 74343772 74343823 -74439649 - L1M3 LINE L1 -677 5494 5444 253 235 0 0 chr11 74343829 74343880 -74439592 - L1M3 LINE L1 -677 5494 5444 368 297 33 20 chr11 74344188 74344418 -74439054 - L1M1 LINE L1 -647 5517 5316 9246 131 6 11 chr11 74344885 74347385 -74436087 - L1MA3 LINE L1 -105 6200 3707 2319 84 0 7 chr11 74347487 74347773 -74435699 - AluY SINE Alu -27 284 1 734 207 13 113 chr11 74348431 74348507 -74434965 - L1MB8 LINE L1 0 6184 6102 1728 180 3 0 chr11 74348507 74348790 -74434682 + AluJb SINE Alu 29 312 0 734 207 13 113 chr11 74348790 74349043 -74434429 - L1MB8 LINE L1 -82 6102 5875 326 242 0 81 chr11 74350073 74350259 -74433213 + GA-rich Low_complexity Low_complexity 6 176 0 1030 217 138 32 chr11 74351012 74351454 -74432018 + MER74B LTR ERVL 59 547 -75 1833 229 40 76 chr11 74353110 74353810 -74429662 + L1MB8 LINE L1 5422 6096 -82 3752 158 53 23 chr11 74353810 74354131 -74429341 + Tigger3b DNA MER2_type 1 311 -2717 2140 132 3 3 chr11 74354131 74354435 -74429037 + AluSq SINE Alu 1 304 -9 2105 121 10 3 chr11 74354440 74354737 -74428735 + AluSx SINE Alu 1 299 -13 3752 158 53 23 chr11 74354737 74355068 -74428404 + Tigger3b DNA MER2_type 314 686 -2342 2240 91 0 32 chr11 74355068 74355376 -74428096 - AluY SINE Alu -13 298 1 3752 158 53 23 chr11 74355376 74355458 -74428014 + Tigger3b DNA MER2_type 686 764 -467 2287 104 7 0 chr11 74355468 74355777 -74427695 - AluSp SINE Alu 0 313 3 479 243 162 0 chr11 74356413 74356549 -74426923 - MER58A DNA MER1_type -16 208 51 3830 184 48 51 chr11 74356556 74356825 -74426647 + L1MB3 LINE L1 5210 5478 -705 2026 124 0 55 chr11 74356825 74357155 -74426317 + AluSx SINE Alu 1 312 0 1717 165 3 40 chr11 74357158 74357455 -74426017 + AluJb SINE Alu 1 286 -26 243 0 0 0 chr11 74357458 74357485 -74425987 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3830 184 48 51 chr11 74357485 74358135 -74425337 + L1MB3 LINE L1 5482 6131 -52 2488 70 0 10 chr11 74358135 74358437 -74425035 + AluSq SINE Alu 1 299 -14 3830 184 48 51 chr11 74358437 74358488 -74424984 + L1MB3 LINE L1 6131 6181 -2 253 324 0 0 chr11 74358492 74358563 -74424909 - MER58A DNA MER1_type -36 71 1 1748 170 42 12 chr11 74360557 74360887 -74422585 - MER2 DNA MER2_type -4 340 1 249 265 60 0 chr11 74361254 74361337 -74422135 + MIR SINE MIR 63 150 -112 3248 240 85 24 chr11 74362103 74363056 -74420416 + L1MD1 LINE L1 2 895 -5645 2184 120 10 0 chr11 74363056 74363355 -74420117 + AluSq SINE Alu 1 302 -11 3248 240 85 24 chr11 74363355 74364999 -74418473 + L1MD1 LINE L1 895 3101 -3439 * 6416 227 52 43 chr11 74364995 74365690 -74417782 + L1MD1 LINE L1 3394 4082 -2554 2175 132 0 0 chr11 74365690 74365978 -74417494 + AluSq SINE Alu 1 288 -25 6416 227 52 43 chr11 74365978 74366702 -74416770 + L1MD1 LINE L1 4082 4799 -1837 2226 103 30 3 chr11 74366702 74367003 -74416469 + AluSc SINE Alu 1 309 0 6416 227 52 43 chr11 74367003 74367251 -74416221 + L1MD1 LINE L1 4799 5043 -1593 1781 117 11 34 chr11 74367251 74367515 -74415957 + AluSx SINE Alu 32 289 -23 2232 91 42 0 chr11 74367515 74367800 -74415672 + AluY SINE Alu 1 298 -13 6416 227 52 43 chr11 74367800 74368820 -74414652 + L1MD1 LINE L1 5043 6053 -583 1778 179 10 3 chr11 74368820 74369127 -74414345 + AluJo SINE Alu 1 309 -3 6416 227 52 43 chr11 74369127 74369637 -74413835 + L1MD1 LINE L1 6053 6613 -23 1976 165 26 97 chr11 74369637 74370103 -74413369 + Tigger2a DNA MER2_type 2 434 0 6416 227 52 43 chr11 74370103 74370127 -74413345 + L1MD1 LINE L1 6613 6635 -1 982 298 37 26 chr11 74370130 74370687 -74412785 + L1MD1 LINE L1 5564 5997 -245 2099 228 14 29 chr11 74370179 74370244 -74413228 + L1MB7 LINE L1 5624 5688 -496 721 163 23 8 chr11 74370244 74370373 -74413099 + FLAM_C SINE Alu 1 131 -2 2099 228 14 29 chr11 74370373 74370860 -74412612 + L1MB7 LINE L1 5688 6168 -16 2102 131 7 0 chr11 74370980 74371277 -74412195 + AluSx SINE Alu 1 299 -13 1977 114 3 59 chr11 74371280 74371627 -74411845 + AluSg SINE Alu 1 310 0 460 269 23 0 chr11 74372086 74372261 -74411211 + L1MB5 LINE L1 5681 5859 -315 522 241 59 86 chr11 74372271 74372491 -74410981 + MER21B LTR ERV1 12 225 -638 2339 100 3 0 chr11 74372526 74372825 -74410647 + AluSq SINE Alu 1 300 -13 1746 127 0 12 chr11 74373541 74373785 -74409687 + AluSx SINE Alu 1 241 -71 524 246 9 0 chr11 74373841 74373955 -74409517 + MER58A DNA MER1_type 4 118 0 266 114 0 23 chr11 74373995 74374039 -74409433 + AluSx SINE Alu 246 288 -12 267 200 0 0 chr11 74374042 74374097 -74409375 + AluSx SINE Alu 247 301 0 580 208 167 6 chr11 74374500 74374668 -74408804 + MER58A DNA MER1_type 4 198 -26 251 272 45 114 chr11 74374722 74374924 -74408548 - MIR SINE MIR -66 196 9 571 235 81 0 chr11 74375589 74375725 -74407747 - MIR SINE MIR -54 208 62 1002 57 0 0 chr11 74376114 74376236 -74407236 - LTR5 LTR ERVK 0 969 848 236 266 107 0 chr11 74376434 74376561 -74406911 + MIR SINE MIR 99 244 -18 1595 162 10 58 chr11 74376681 74376989 -74406483 - AluJb SINE Alu -19 293 1 185 315 110 0 chr11 74377354 74377427 -74406045 + MER5A DNA MER1_type 46 126 -63 370 147 13 0 chr11 74377784 74377859 -74405613 - Charlie5 DNA MER1_type -31 2581 2506 1131 135 40 72 chr11 74377861 74378083 -74405389 + AluJo SINE Alu 1 215 -97 421 272 115 31 chr11 74378143 74378507 -74404965 + L1ME LINE L1 5410 5800 -370 2552 188 27 2 chr11 74379121 74379632 -74403840 + L1MB3 LINE L1 5660 6183 0 502 291 113 29 chr11 74379671 74379946 -74403526 + L2 LINE L2 2967 3264 -49 3132 250 48 14 chr11 74379946 74380627 -74402845 + L1M4 LINE L1 2637 3368 -2778 2360 94 0 3 chr11 74380627 74380934 -74402538 + AluY SINE Alu 1 306 -5 3132 250 48 14 chr11 74380934 74381283 -74402189 + L1M4 LINE L1 3368 3703 -2443 1328 218 70 62 chr11 74381696 74381918 -74401554 + Charlie1b DNA MER1_type 52 271 -2490 2074 130 0 3 chr11 74381918 74382211 -74401261 - AluSx SINE Alu -14 298 7 1328 218 70 62 chr11 74382211 74382222 -74401250 + Charlie1b DNA MER1_type 271 280 -2481 1940 140 4 0 chr11 74382222 74382493 -74400979 - AluJb SINE Alu -40 272 1 1328 218 70 62 chr11 74382493 74382726 -74400746 + Charlie1b DNA MER1_type 280 523 0 1337 243 109 8 chr11 74384057 74384571 -74398901 + Charlie2 DNA MER1_type 2236 2801 -61 20651 137 53 49 chr11 74385191 74388159 -74395313 - L1 LINE L1 -2621 4944 1933 2241 156 86 8 chr11 74388159 74388556 -74394916 - MSTA LTR MaLR 0 428 1 20651 137 53 49 chr11 74388556 74390483 -74392989 - L1 LINE L1 -5632 1933 15 236 139 0 0 chr11 74391002 74391038 -74392434 + MER53 DNA DNA 1 36 -153 4762 138 19 62 chr11 74391039 74391099 -74392373 + L1MC1 LINE L1 5386 5447 -886 2249 102 0 10 chr11 74391099 74391392 -74392080 + AluY SINE Alu 1 290 -21 4762 138 19 62 chr11 74391392 74392012 -74391460 + L1MC1 LINE L1 5447 6014 -319 1921 138 10 22 chr11 74392012 74392323 -74391149 - AluJo SINE Alu -5 307 1 4762 138 19 62 chr11 74392323 74392613 -74390859 + L1MC1 LINE L1 6014 6315 -18 443 198 10 10 chr11 74392641 74392742 -74390730 - MER53 DNA DNA -13 176 76 607 206 103 7 chr11 74393390 74393536 -74389936 - L2 LINE L2 -1 3312 3153 1496 196 73 60 chr11 74393570 74394050 -74389422 + MLT1D LTR MaLR 1 486 -19 205 288 0 0 chr11 74394091 74394150 -74389322 - L2 LINE L2 -239 3074 3016 1068 231 75 55 chr11 74394432 74394787 -74388685 + MLT1C LTR MaLR 2 373 -94 2170 110 35 0 chr11 74394787 74395077 -74388395 + AluSx SINE Alu 1 300 -12 1068 231 75 55 chr11 74395077 74395174 -74388298 + MLT1C LTR MaLR 373 467 0 1066 113 0 0 chr11 74395945 74396086 -74387386 - AluSq/x SINE Alu -172 141 1 396 179 60 0 chr11 74396086 74396217 -74387255 - MLT1D LTR MaLR -83 386 248 226 140 70 18 chr11 74396631 74396688 -74386784 - LTR50 LTR ERVL -18 777 718 246 116 0 0 chr11 74397004 74397047 -74386425 + (CAG)n Simple_repeat Simple_repeat 2 44 0 1618 187 28 3 chr11 74397437 74397726 -74385746 - AluJo SINE Alu -16 296 1 1897 230 39 18 chr11 74397757 74398249 -74385223 - MLT1D LTR MaLR -3 502 1 944 322 79 21 chr11 74398459 74398925 -74384547 - ERVL LTR ERVL -438 5326 4834 1481 188 44 13 chr11 74399391 74399689 -74383783 + AluJb SINE Alu 3 309 -3 1480 234 42 35 chr11 74399728 74400185 -74383287 + MLT1C LTR MaLR 7 466 -1 191 232 54 0 chr11 74400829 74400885 -74382587 + L3 LINE CR1 1105 1163 -414 2301 108 0 9 chr11 74400908 74401223 -74382249 - AluSq SINE Alu -1 312 1 2634 55 3 0 chr11 74401477 74401787 -74381685 - AluY SINE Alu 0 311 1 335 191 119 0 chr11 74402202 74402286 -74381186 - MLT1G3 LTR MaLR -203 327 234 972 222 8 26 chr11 74402288 74402522 -74380950 - MER49 LTR ERV1 0 923 694 848 173 20 0 chr11 74402513 74402663 -74380809 - MER49 LTR ERV1 -675 248 96 * 2185 120 3 3 chr11 74403577 74403885 -74379587 + AluSc SINE Alu 1 308 -1 1265 120 53 14 chr11 74404006 74404214 -74379258 - MER4B LTR ERV1 0 610 395 228 135 0 0 chr11 74404981 74405018 -74378454 + (A)n Simple_repeat Simple_repeat 1 37 0 1292 115 53 14 chr11 74405130 74405338 -74378134 - MER4B LTR ERV1 0 610 395 1446 214 188 6 chr11 74405870 74406355 -74377117 - MER45B DNA AcHobo -10 1030 458 2132 135 3 0 chr11 74406357 74406653 -74376819 + AluJb SINE Alu 1 297 -15 1859 174 43 11 chr11 74406658 74407026 -74376446 + MLT1B LTR MaLR 11 390 0 673 174 26 0 chr11 74407093 74407208 -74376264 - FLAM_C SINE Alu -15 118 1 375 278 90 0 chr11 74407215 74407348 -74376124 - MER45B DNA AcHobo -604 436 292 666 226 20 0 chr11 74407406 74407552 -74375920 - MER45B DNA AcHobo -862 178 30 2215 206 165 40 chr11 74407913 74408646 -74374826 - LTR1B LTR ERV1 -1 825 1 2211 113 3 26 chr11 74408669 74408979 -74374493 + AluSx SINE Alu 1 303 -9 445 207 157 25 chr11 74409273 74409394 -74374078 - MLT1C LTR MaLR -1 466 330 840 174 35 6 chr11 74409447 74409619 -74373853 - L1MC/D LINE L1 -791 5622 5446 1467 225 39 49 chr11 74409619 74410005 -74373467 + MLT1B LTR MaLR 1 382 -8 792 128 0 0 chr11 74410047 74410164 -74373308 - FLAM_C SINE Alu -16 117 1 10098 247 62 30 chr11 74410164 74412963 -74370509 - L1MEc LINE L1 -780 5435 2726 2236 131 0 3 chr11 74412963 74413277 -74370195 - AluSq SINE Alu 0 313 1 10098 247 62 30 chr11 74413277 74414217 -74369255 - L1MEc LINE L1 -3489 2726 1817 1553 189 0 18 chr11 74414217 74414498 -74368974 - AluJo SINE Alu -5 307 32 10098 247 62 30 chr11 74414498 74414513 -74368959 - L1MEc LINE L1 -4398 1817 1804 228 35 0 0 chr11 74414513 74414542 -74368930 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 10098 247 62 30 chr11 74414542 74414891 -74368581 - L1MEc LINE L1 -4411 1804 1468 1842 184 0 3 chr11 74414891 74415190 -74368282 - AluJo SINE Alu -11 301 4 10098 247 62 30 chr11 74415190 74415592 -74367880 - L1MEc LINE L1 -4747 1468 830 2539 132 31 2 chr11 74417098 74417514 -74365958 + MSTA LTR MaLR 1 428 0 264 238 50 0 chr11 74417678 74417758 -74365714 + MIR SINE MIR 68 151 -111 323 253 55 0 chr11 74419645 74419736 -74363736 + L2 LINE L2 3204 3299 -14 183 280 127 8 chr11 74420126 74420244 -74363228 - L2 LINE L2 -220 3052 2921 339 319 135 37 chr11 74420307 74420419 -74363053 - L2 LINE L2 -510 2804 2704 2146 102 14 17 chr11 74420419 74420712 -74362760 + AluSx SINE Alu 3 294 -18 339 319 135 37 chr11 74420712 74421110 -74362362 - L2 LINE L2 -610 2704 2244 765 247 65 59 chr11 74421205 74421639 -74361833 + MLT1C LTR MaLR 8 358 -16 1151 192 55 0 chr11 74421742 74421997 -74361475 + MLT1B LTR MaLR 122 390 0 254 296 51 0 chr11 74423617 74423715 -74359757 + MIR SINE MIR 110 212 -50 223 293 136 21 chr11 74423700 74423840 -74359632 + L2 LINE L2 1870 2025 -1289 * 1098 205 27 109 chr11 74423840 74424133 -74359339 - AluJo SINE Alu -43 269 1 2069 116 0 53 chr11 74424153 74424471 -74359001 - AluSc SINE Alu -8 301 1 188 302 230 21 chr11 74424479 74424810 -74358662 + L2 LINE L2 2109 2508 -806 1178 130 6 0 chr11 74424810 74424979 -74358493 + AluJb SINE Alu 136 305 -7 395 325 27 11 chr11 74424983 74425171 -74358301 + L2 LINE L2 2510 2700 -614 2548 108 15 22 chr11 74425175 74425637 -74357835 - MER1A DNA MER1_type 0 529 31 647 287 71 56 chr11 74425642 74426236 -74357236 + L2 LINE L2 2699 3308 -5 235 250 67 0 chr11 74428920 74428980 -74354492 + MIR SINE MIR 87 150 -112 398 344 33 53 chr11 74429637 74429881 -74353591 + MIR SINE MIR 10 248 -14 267 270 0 0 chr11 74431215 74431278 -74352194 - L3 LINE CR1 -530 1047 985 390 258 65 8 chr11 74432154 74432278 -74351194 + MER94 DNA DNA 1 131 -3 274 250 29 0 chr11 74432722 74432790 -74350682 + LTR67 LTR ERVL 114 183 -374 270 217 33 58 chr11 74433038 74433158 -74350314 + LTR67 LTR ERVL 438 554 -3 840 126 0 14 chr11 74433352 74433495 -74349977 + MSTB LTR MaLR 6 146 -280 2379 105 0 0 chr11 74433898 74434203 -74349269 - AluSx SINE Alu -7 305 1 1385 175 75 11 chr11 74434386 74434666 -74348806 + MSTB LTR MaLR 127 424 -2 317 242 51 57 chr11 74434839 74434996 -74348476 + MER53 DNA DNA 27 182 -7 * 459 200 14 50 chr11 74434864 74435004 -74348468 - MER53 DNA DNA -46 143 9 779 340 94 18 chr11 74436622 74436872 -74346600 + L2 LINE L2 2435 2664 -649 2223 117 0 13 chr11 74436872 74437179 -74346293 - AluSx SINE Alu -9 303 1 779 340 94 18 chr11 74437179 74437504 -74345968 + L2 LINE L2 2664 3059 -254 205 376 32 6 chr11 74437680 74437837 -74345635 - L2 LINE L2 -235 3037 2877 265 340 120 21 chr11 74437880 74438121 -74345351 - L2 LINE L2 -492 2822 2558 507 114 13 0 chr11 74438306 74438385 -74345087 + MLT1B LTR MaLR 6 85 -305 1740 192 10 3 chr11 74438392 74438699 -74344773 - AluJb SINE Alu -3 309 1 899 132 0 0 chr11 74438717 74438838 -74344634 - FLAM_C SINE Alu -20 123 3 1029 173 100 0 chr11 74438838 74439069 -74344403 + MLT1B LTR MaLR 80 333 -57 436 301 72 0 chr11 74439740 74439893 -74343579 + MIR SINE MIR 16 179 -83 189 178 0 55 chr11 74439959 74440032 -74343440 + CT-rich Low_complexity Low_complexity 3 71 0 344 261 99 0 chr11 74441087 74441198 -74342274 + MER5A DNA MER1_type 36 157 -32 2372 95 0 0 chr11 74441198 74441504 -74341968 - AluSq SINE Alu -7 306 1 254 375 7 0 chr11 74441732 74441868 -74341604 + MLT1I LTR MaLR 4 140 -269 524 237 0 0 chr11 74442026 74442140 -74341332 + MLT1I LTR MaLR 296 409 0 21 36 0 0 chr11 74442156 74442184 -74341288 + AT_rich Low_complexity Low_complexity 1 28 0 189 330 103 77 chr11 74442203 74442476 -74340996 + L2 LINE L2 2992 3271 -1 21 36 0 0 chr11 74442594 74442622 -74340850 + AT_rich Low_complexity Low_complexity 1 28 0 1114 292 208 15 chr11 74442662 74443729 -74339743 - L2 LINE L2 -6 3307 2030 832 256 88 14 chr11 74443732 74444083 -74339389 - LTR37A LTR ERV1 -20 406 30 675 284 87 0 chr11 74444142 74444396 -74339076 - L2 LINE L2 -1275 2039 1764 201 222 48 16 chr11 74444829 74444892 -74338580 - MIR SINE MIR -178 84 20 2264 105 0 26 chr11 74446315 74446620 -74336852 - AluSx SINE Alu -15 297 1 195 114 0 0 chr11 74446724 74446759 -74336713 + (TG)n Simple_repeat Simple_repeat 1 35 0 340 249 218 42 chr11 74446762 74446955 -74336517 - HAL1 LINE L1 -41 2466 2240 939 141 0 0 chr11 74446976 74447111 -74336361 + FLAM_C SINE Alu 9 143 0 1382 180 77 0 chr11 74447135 74447368 -74336104 - AluJb SINE Alu -61 251 1 226 314 83 39 chr11 74448637 74448793 -74334679 + L3 LINE CR1 1396 1558 -19 745 167 0 0 chr11 74449482 74449733 -74333739 + FLAM_C SINE Alu 1 251 0 433 245 27 0 chr11 74449741 74449888 -74333584 + GA-rich Low_complexity Low_complexity 1 151 0 491 216 162 0 chr11 74449888 74450036 -74333436 + L1M4 LINE L1 5188 5359 -787 647 309 68 10 chr11 74450209 74450504 -74332968 + MLT1K LTR MaLR 167 478 -110 280 212 212 20 chr11 74450506 74450652 -74332820 + MLT1H LTR MaLR 1 174 -375 191 188 25 25 chr11 74451138 74451218 -74332254 + (CATA)n Simple_repeat Simple_repeat 3 82 0 2169 144 27 62 chr11 74451242 74451367 -74332105 + Tigger2a DNA MER2_type 1 129 -2579 2693 89 44 25 chr11 74451367 74451409 -74332063 - MLT2A1 LTR ERVL 0 444 404 315 0 0 0 chr11 74451409 74451444 -74332028 + (CA)n Simple_repeat Simple_repeat 2 36 0 2693 89 44 25 chr11 74451444 74451837 -74331635 - MLT2A1 LTR ERVL -40 404 1 2169 144 27 62 chr11 74451837 74452161 -74331311 + Tigger2a DNA MER2_type 129 434 0 237 344 92 32 chr11 74453871 74454089 -74329383 + MIR SINE MIR 20 250 -12 207 139 0 0 chr11 74454120 74454156 -74329316 + (CAT)n Simple_repeat Simple_repeat 3 38 0 235 191 63 32 chr11 74454334 74454397 -74329075 - MIR SINE MIR -84 124 60 729 129 22 22 chr11 74454742 74454920 -74328552 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 405 180 54 0 chr11 74454980 74455147 -74328325 + (TCTA)n Simple_repeat Simple_repeat 3 178 0 441 207 29 6 chr11 74455183 74455357 -74328115 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 219 36 0 0 chr11 74455361 74455389 -74328083 + (TC)n Simple_repeat Simple_repeat 2 29 0 680 215 37 56 chr11 74456350 74456564 -74326908 + MIR SINE MIR 51 260 -2 747 245 76 21 chr11 74456594 74456831 -74326641 - MLT1J LTR MaLR -33 478 229 848 206 138 8 chr11 74456886 74457133 -74326339 - L1MB8 LINE L1 -57 6121 5843 518 270 53 37 chr11 74457154 74457343 -74326129 - MLT1J LTR MaLR -311 200 9 352 295 66 8 chr11 74457461 74457583 -74325889 - MIR SINE MIR -74 188 60 588 138 184 26 chr11 74457600 74457752 -74325720 - MER20 DNA MER1_type 0 219 44 417 285 0 0 chr11 74457773 74458088 -74325384 + (TGAG)n Simple_repeat Simple_repeat 1 315 0 436 270 3 10 chr11 74458164 74458537 -74324935 + (TGAG)n Simple_repeat Simple_repeat 1 370 0 396 285 0 0 chr11 74458551 74458730 -74324742 + (TGGG)n Simple_repeat Simple_repeat 2 180 0 259 281 0 0 chr11 74458731 74458795 -74324677 + (TGGA)n Simple_repeat Simple_repeat 1 64 0 426 276 0 0 chr11 74458795 74458969 -74324503 + (TGAG)n Simple_repeat Simple_repeat 1 174 0 222 255 0 0 chr11 74458979 74459026 -74324446 + (TGGG)n Simple_repeat Simple_repeat 2 48 0 536 240 6 0 chr11 74459027 74459206 -74324266 + (TGAG)n Simple_repeat Simple_repeat 1 180 0 290 254 0 0 chr11 74459210 74459277 -74324195 + (TGAA)n Simple_repeat Simple_repeat 1 67 0 261 83 0 0 chr11 74461329 74461365 -74322107 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 35 0 0 0 chr11 74461466 74461501 -74321971 + AT_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr11 74461536 74461563 -74321909 + AT_rich Low_complexity Low_complexity 1 27 0 959 122 7 7 chr11 74461563 74461710 -74321762 - AluJb SINE Alu -30 282 136 197 238 139 82 chr11 74461797 74461919 -74321553 - MIR SINE MIR -114 148 20 2133 108 0 3 chr11 74462446 74462743 -74320729 + AluSq SINE Alu 1 296 -17 3208 32 0 0 chr11 74463021 74463392 -74320080 - L1PA4 LINE L1 -1 6154 5784 317 287 90 0 chr11 74464279 74464401 -74319071 - MER5A DNA MER1_type -34 155 23 187 237 0 0 chr11 74465391 74465429 -74318043 - MIR SINE MIR -59 149 112 294 225 42 0 chr11 74465838 74465909 -74317563 + MLT1H LTR MaLR 463 536 -13 240 170 0 38 chr11 74466047 74466100 -74317372 + (CAGGG)n Simple_repeat Simple_repeat 4 54 0 277 337 83 12 chr11 74468441 74468610 -74314862 - MIR SINE MIR -44 218 38 796 263 83 63 chr11 74469001 74469464 -74314008 - MLT1H LTR MaLR -32 517 1 266 307 99 0 chr11 74469609 74469710 -74313762 + L2 LINE L2 3158 3268 -4 2562 153 51 10 chr11 74470644 74470790 -74312682 - L1MA8 LINE L1 -110 6181 6036 552 313 47 42 chr11 74470790 74471174 -74312298 - L1MC1 LINE L1 -309 6024 5639 592 179 179 7 chr11 74471902 74472053 -74311419 + MER5A DNA MER1_type 13 189 0 341 341 40 6 chr11 74472175 74472301 -74311171 + (CAGAGA)n Simple_repeat Simple_repeat 2 137 -43 1634 207 59 46 chr11 74472301 74472692 -74310780 - MSTD LTR MaLR 0 396 1 341 341 40 6 chr11 74472692 74472738 -74310734 + (CAGAGA)n Simple_repeat Simple_repeat 137 180 0 198 236 0 0 chr11 74472749 74472804 -74310668 + (CAGAGA)n Simple_repeat Simple_repeat 6 60 0 418 307 54 12 chr11 74473898 74474064 -74309408 - MIR SINE MIR 0 262 90 1983 138 95 6 chr11 74474401 74474748 -74308724 + MSTA LTR MaLR 1 378 -50 185 352 0 28 chr11 74474762 74474833 -74308639 - MIR SINE MIR -157 105 37 550 156 11 43 chr11 74474908 74475094 -74308378 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 367 273 145 17 chr11 74475918 74476090 -74307382 + MIR SINE MIR 44 237 -25 540 206 0 0 chr11 74476234 74476370 -74307102 + (TGGA)n Simple_repeat Simple_repeat 1 136 0 246 187 140 56 chr11 74476581 74476688 -74306784 - LTR16A LTR ERVL -32 418 303 304 278 188 0 chr11 74476713 74476846 -74306626 - LTR16A LTR ERVL -290 160 3 491 282 118 45 chr11 74476879 74477209 -74306263 - L1MC4 LINE L1 0 8042 7689 989 170 52 0 chr11 74477212 74477406 -74306066 - AluJo SINE Alu 0 312 109 422 216 8 0 chr11 74477587 74477712 -74305760 + (TGGA)n Simple_repeat Simple_repeat 4 129 0 380 339 69 11 chr11 74477989 74478163 -74305309 - HAL1 LINE L1 -826 1681 1498 300 203 51 13 chr11 74478230 74478309 -74305163 - MER53 DNA DNA -86 103 22 317 351 26 0 chr11 74478560 74478711 -74304761 + MIR SINE MIR 67 221 -41 1018 291 49 6 chr11 74478786 74479130 -74304342 + MLT1I LTR MaLR 51 409 0 282 246 0 14 chr11 74479560 74479629 -74303843 + G-rich Low_complexity Low_complexity 3 70 0 1911 153 0 7 chr11 74479777 74480085 -74303387 - AluJo SINE Alu -6 306 1 959 179 0 0 chr11 74480547 74480709 -74302763 + AluJb SINE Alu 137 298 -14 2164 121 0 3 chr11 74480709 74481023 -74302449 + AluSq SINE Alu 1 313 0 2081 126 3 3 chr11 74481592 74481901 -74301571 + AluSx SINE Alu 1 309 -3 314 307 101 67 chr11 74481928 74482286 -74301186 + L1ME LINE L1 5357 5726 -395 1242 143 211 12 chr11 74482697 74482948 -74300524 + AluJb SINE Alu 2 302 0 598 268 182 40 chr11 74485481 74486095 -74297377 + L2 LINE L2 2618 3309 -4 218 329 95 0 chr11 74487551 74487688 -74295784 + MIR SINE MIR 107 256 -6 558 29 0 0 chr11 74487762 74487830 -74295642 + (TTCC)n Simple_repeat Simple_repeat 3 70 0 2135 109 0 3 chr11 74487837 74488130 -74295342 - AluSx SINE Alu -20 292 1 315 182 0 104 chr11 74488746 74488823 -74294649 + LTR16A1 LTR ERVL 91 159 -298 186 350 106 32 chr11 74488959 74489176 -74294296 + L2 LINE L2 1824 2056 -1258 384 309 67 20 chr11 74489187 74489336 -74294136 + MIR SINE MIR 28 183 -79 347 263 53 111 chr11 74489607 74489711 -74293761 + MIR SINE MIR 33 141 -121 1561 185 0 24 chr11 74489711 74490008 -74293464 - AluJo SINE Alu -22 290 1 347 263 53 111 chr11 74490008 74490146 -74293326 + MIR SINE MIR 141 261 -1 207 194 0 0 chr11 74490160 74490196 -74293276 + (CAT)n Simple_repeat Simple_repeat 3 38 0 775 177 0 17 chr11 74490197 74490378 -74293094 + (CACCAT)n Simple_repeat Simple_repeat 1 178 0 297 228 0 0 chr11 74490379 74490436 -74293036 + (CAT)n Simple_repeat Simple_repeat 3 59 0 845 307 77 34 chr11 74491077 74491111 -74292361 + L1ME1 LINE L1 5665 5696 -470 2413 84 0 0 chr11 74491111 74491422 -74292050 - AluY SINE Alu 0 311 1 845 307 77 34 chr11 74491422 74491859 -74291613 + L1ME1 LINE L1 5696 6161 -5 210 316 0 26 chr11 74492346 74492422 -74291050 + MIR SINE MIR 119 192 -70 450 195 11 0 chr11 74492442 74492529 -74290943 - MER74C LTR ERVL -257 203 116 613 229 81 31 chr11 74492563 74492786 -74290686 + MIR SINE MIR 17 250 -12 247 238 24 71 chr11 74492802 74492886 -74290586 + MIR3 SINE MIR 114 193 -15 536 275 57 53 chr11 74493203 74493450 -74290022 + LTR33 LTR ERVL 266 513 -8 724 301 94 15 chr11 74493622 74494027 -74289445 + MLT2B2 LTR ERVL 70 506 -9 351 312 70 27 chr11 74494716 74494902 -74288570 + MIR SINE MIR 11 204 -58 192 97 0 0 chr11 74495307 74495338 -74288134 + (TTTTA)n Simple_repeat Simple_repeat 3 33 0 2093 123 0 16 chr11 74495354 74495671 -74287801 - AluSx SINE Alu 0 312 1 218 340 85 0 chr11 74495997 74496091 -74287381 + MIR SINE MIR 89 190 -72 1716 215 29 8 chr11 74496113 74496495 -74286977 - MLT1B LTR MaLR 0 390 1 1096 277 113 13 chr11 74497086 74497555 -74285917 + MLT1F LTR MaLR 16 531 -11 1617 207 137 0 chr11 74497559 74497940 -74285532 + MLT1C LTR MaLR 1 433 -34 1587 204 0 0 chr11 74498096 74498404 -74285068 - AluJo SINE Alu -4 308 1 740 314 41 49 chr11 74499261 74499630 -74283842 - LTR16B LTR ERVL 0 464 99 231 300 0 0 chr11 74500242 74500302 -74283170 + MIR SINE MIR 77 136 -72 352 230 0 92 chr11 74500344 74500879 -74282593 + CT-rich Low_complexity Low_complexity 1 485 0 250 215 0 89 chr11 74500904 74501039 -74282433 + CT-rich Low_complexity Low_complexity 2 124 0 783 90 17 10 chr11 74501810 74501991 -74281481 - Charlie3 DNA MER1_type -8 2702 2445 724 227 152 59 chr11 74502146 74502520 -74280952 + MLT1C LTR MaLR 1 409 -58 2315 76 3 13 chr11 74502520 74502834 -74280638 - AluSx SINE Alu -1 311 1 378 366 47 13 chr11 74502903 74503135 -74280337 - MIR SINE MIR -15 247 8 636 172 223 0 chr11 74503685 74503842 -74279630 + L1MB3 LINE L1 5989 6180 -3 265 213 107 0 chr11 74504230 74504305 -74279167 + MER5A DNA MER1_type 81 163 -26 1993 131 0 3 chr11 74505214 74505504 -74277968 - AluSx SINE Alu -23 289 1 394 342 68 73 chr11 74505655 74506231 -74277241 - L1ME4a LINE L1 -1 6120 5548 1079 174 137 2 chr11 74506541 74507057 -74276415 - L1 LINE L1 -1380 4766 4174 747 240 0 0 chr11 74507167 74507681 -74275791 + (ATG)n Simple_repeat Simple_repeat 1 514 0 1934 159 0 28 chr11 74508213 74508533 -74274939 + AluJo SINE Alu 1 311 -1 943 175 59 31 chr11 74508973 74509391 -74274081 + MLT1D LTR MaLR 5 485 -20 629 289 97 26 chr11 74509435 74509746 -74273726 + MLT1K LTR MaLR 253 585 -3 292 277 59 20 chr11 74509919 74510020 -74273452 - L2 LINE L2 -4 3309 3205 2184 124 0 0 chr11 74510058 74510361 -74273111 - AluSq SINE Alu 0 303 1 21 0 0 0 chr11 74510364 74510385 -74273087 + AT_rich Low_complexity Low_complexity 1 21 0 609 206 71 0 chr11 74510611 74510766 -74272706 - MER20 DNA MER1_type -17 202 37 330 129 0 0 chr11 74511313 74511375 -74272097 + (GA)n Simple_repeat Simple_repeat 1 62 0 1022 165 6 6 chr11 74511468 74511781 -74271691 + (TGGA)n Simple_repeat Simple_repeat 2 314 0 709 133 15 0 chr11 74511883 74512018 -74271454 + (TGGA)n Simple_repeat Simple_repeat 1 137 0 191 322 178 11 chr11 74512940 74513114 -74270358 - MIR SINE MIR -25 237 35 766 286 68 68 chr11 74513162 74513620 -74269852 + MLT1H LTR MaLR 72 529 -20 702 239 63 0 chr11 74513771 74513930 -74269542 + MER58A DNA MER1_type 1 169 -55 546 70 0 0 chr11 74513930 74514001 -74269471 - MSTA LTR MaLR 0 428 358 2208 114 14 0 chr11 74514003 74514293 -74269179 + AluY SINE Alu 1 294 -17 1502 153 3 2 chr11 74514403 74514677 -74268795 + L1PA15 LINE L1 5884 6158 -10 2906 82 2 0 chr11 74514750 74515151 -74268321 + L1PA10 LINE L1 5763 6164 -4 189 316 0 0 chr11 74515340 74515397 -74268075 + L2 LINE L2 3256 3312 -1 24 0 0 0 chr11 74515720 74515744 -74267728 + AT_rich Low_complexity Low_complexity 1 24 0 612 193 0 0 chr11 74516680 74516794 -74266678 - FLAM_A SINE Alu -19 114 1 1762 185 0 20 chr11 74517036 74517338 -74266134 + AluJo SINE Alu 1 296 -16 2156 119 0 41 chr11 74517342 74517660 -74265812 + AluSx SINE Alu 1 305 -7 1562 282 85 51 chr11 74518175 74519028 -74264444 - L1ME3 LINE L1 -11 6151 5244 407 171 53 0 chr11 74519028 74519104 -74264368 - MADE1 DNA Mariner 0 80 1 1562 282 85 51 chr11 74519104 74519434 -74264038 - L1ME3 LINE L1 -918 5244 4927 725 248 51 17 chr11 74519562 74519857 -74263615 - L1ME3 LINE L1 -1614 4532 4228 2400 204 67 14 chr11 74519874 74520393 -74263079 - MER68 LTR ERV1 -15 547 1 552 248 227 14 chr11 74520412 74520698 -74262774 - L1 LINE L1 -1946 4200 3854 423 244 76 56 chr11 74520709 74520906 -74262566 - L1MC4a LINE L1 -1982 5826 5626 815 274 208 8 chr11 74521560 74522060 -74261412 - L2 LINE L2 -518 2796 2197 4572 155 150 23 chr11 74522514 74523164 -74260308 - LTR28 LTR ERV1 0 1020 221 2474 80 0 0 chr11 74523164 74523464 -74260008 + AluSx SINE Alu 1 300 -12 4572 155 150 23 chr11 74523464 74523718 -74259754 - LTR28 LTR ERV1 -799 221 1 2042 138 0 14 chr11 74524119 74524416 -74259056 - AluJb SINE Alu -18 294 2 235 306 8 3 chr11 74524595 74524708 -74258764 - L1MC4a LINE L1 -856 5435 5354 1354 154 44 27 chr11 74524713 74525011 -74258461 - L1MA7 LINE L1 -3 6288 5986 231 276 40 26 chr11 74525011 74525087 -74258385 + MIR SINE MIR 52 128 -134 445 258 73 0 chr11 74525837 74525988 -74257484 - MIR SINE MIR -79 183 22 308 164 0 55 chr11 74526669 74526742 -74256730 - LTR41 LTR ERVL -11 762 694 242 298 170 0 chr11 74527107 74527248 -74256224 - LTR41 LTR ERVL -607 166 2 223 72 0 0 chr11 74527532 74527563 -74255909 - MIR SINE MIR -60 148 104 264 264 293 0 chr11 74528162 74528302 -74255170 + MIR SINE MIR 13 193 -69 1470 191 78 60 chr11 74528428 74528661 -74254811 + MLT2D LTR ERVL 1 245 -169 2439 88 0 0 chr11 74528661 74528955 -74254517 + AluSg SINE Alu 1 294 -16 1470 191 78 60 chr11 74528955 74529120 -74254352 + MLT2D LTR ERVL 245 406 -8 210 208 0 0 chr11 74532295 74532348 -74251124 + (TGGA)n Simple_repeat Simple_repeat 3 55 0 314 231 11 0 chr11 74532587 74532678 -74250794 + (TGGG)n Simple_repeat Simple_repeat 2 93 0 479 228 18 6 chr11 74532709 74532880 -74250592 + (TGGG)n Simple_repeat Simple_repeat 3 175 0 183 156 0 0 chr11 74532987 74533019 -74250453 + (TGGG)n Simple_repeat Simple_repeat 2 33 0 502 212 11 22 chr11 74533056 74533235 -74250237 + (TGGG)n Simple_repeat Simple_repeat 3 179 0 349 231 8 8 chr11 74533267 74533384 -74250088 + (TGGG)n Simple_repeat Simple_repeat 2 118 0 21 0 0 0 chr11 74535263 74535284 -74248188 + AT_rich Low_complexity Low_complexity 1 21 0 1038 171 0 0 chr11 74535289 74535441 -74248031 - FRAM SINE Alu -27 149 1 1349 261 42 14 chr11 74535441 74535866 -74247606 - L1MB5 LINE L1 -34 6140 5704 585 299 121 36 chr11 74537750 74538281 -74245191 + L2 LINE L2 2599 3292 -21 475 285 77 26 chr11 74538394 74538882 -74244590 + HAL1 LINE L1 1396 2032 -475 180 0 0 0 chr11 74539132 74539152 -74244320 + (A)n Simple_repeat Simple_repeat 1 20 0 1837 127 130 3 chr11 74539158 74539488 -74243984 - MSTA LTR MaLR -56 372 1 295 225 0 14 chr11 74539488 74539548 -74243924 + MER58 DNA MER1_type 2361 2419 -1 664 219 67 2 chr11 74539577 74539751 -74243721 + MER5A DNA MER1_type 1 171 -7 377 267 56 0 chr11 74540102 74540192 -74243280 - MER81 DNA DNA -5 109 15 1609 180 68 4 chr11 74540823 74541101 -74242371 - AluJb SINE Alu -16 296 1 1632 174 3 39 chr11 74541101 74541406 -74242066 - AluJo SINE Alu -18 294 1 330 273 67 20 chr11 74541580 74541730 -74241742 - L1ME3A LINE L1 -218 5952 5796 985 216 27 18 chr11 74542572 74542794 -74240678 + MER58A DNA MER1_type 1 224 0 194 333 0 0 chr11 74542873 74542930 -74240542 - L2 LINE L2 -1 3312 3256 402 232 0 85 chr11 74543131 74543295 -74240177 + HAL1 LINE L1 2014 2163 -344 301 306 53 29 chr11 74543317 74543523 -74239949 + HAL1 LINE L1 2293 2503 -4 1000 81 0 22 chr11 74545352 74545488 -74237984 + AluSq/x SINE Alu 19 151 -161 2001 124 4 0 chr11 74545719 74546018 -74237454 - AluSq SINE Alu 0 308 9 25 0 0 0 chr11 74546027 74546052 -74237420 + AT_rich Low_complexity Low_complexity 1 25 0 1917 147 54 23 chr11 74546965 74547319 -74236153 + MLT1A1 LTR MaLR 1 365 0 219 69 0 0 chr11 74547442 74547471 -74236001 + (CAAAAA)n Simple_repeat Simple_repeat 1 29 0 1061 207 96 63 chr11 74549047 74549443 -74234029 - MLT1C LTR MaLR 0 467 59 318 227 62 31 chr11 74549777 74549874 -74233598 - MER5B DNA MER1_type 0 178 79 650 260 125 12 chr11 74551383 74551802 -74231670 - MLT1D LTR MaLR -4 501 1 1373 167 0 17 chr11 74551852 74552085 -74231387 - AluJo SINE Alu 0 312 84 1012 149 87 62 chr11 74552872 74552930 -74230542 - MSTA LTR MaLR -180 248 193 2439 107 0 0 chr11 74552930 74553240 -74230232 - AluSg SINE Alu 0 310 1 1012 149 87 62 chr11 74553240 74553422 -74230050 - MSTA LTR MaLR -235 193 2 3435 131 21 35 chr11 74553552 74554171 -74229301 + MER4B LTR ERV1 1 610 0 1826 143 28 35 chr11 74555736 74556078 -74227394 - MER51B LTR ERV1 0 377 50 2708 49 0 3 chr11 74556099 74556407 -74227065 + AluY SINE Alu 1 307 -4 634 126 0 0 chr11 74556544 74556639 -74226833 - FLAM_C SINE Alu -32 111 17 1499 161 66 9 chr11 74556766 74557248 -74226224 - LTR24B LTR ERV1 -6 570 36 188 0 74 0 chr11 74557248 74557275 -74226197 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 1172 240 123 13 chr11 74557389 74557851 -74225621 - L1MC4 LINE L1 -699 7343 6831 5298 142 29 30 chr11 74558037 74558959 -74224513 + MER49 LTR ERV1 3 923 0 239 308 67 10 chr11 74559086 74559190 -74224282 + L1MC/D LINE L1 5534 5643 -2165 376 105 211 13 chr11 74559728 74559804 -74223668 - MER51A LTR ERV1 -543 91 1 1962 147 82 14 chr11 74559808 74560162 -74223310 - MER83B LTR ERV1 0 378 1 713 194 150 6 chr11 74560350 74560530 -74222942 - MER20 DNA MER1_type -7 212 7 836 308 129 34 chr11 74560544 74561041 -74222431 - L1M4 LINE L1 -1712 4434 3891 474 317 116 29 chr11 74562125 74563077 -74220395 + L1MEd LINE L1 845 1916 -4647 386 325 59 42 chr11 74563302 74563539 -74219933 + L1MEd LINE L1 2177 2417 -3967 515 344 72 20 chr11 74563539 74563998 -74219474 + L1M4 LINE L1 4211 4693 -1453 719 151 0 89 chr11 74564011 74564157 -74219315 + FLAM_C SINE Alu 1 133 0 2438 145 86 5 chr11 74564195 74564637 -74218835 - MER9 LTR ERVK 0 511 34 793 210 0 0 chr11 74564644 74564782 -74218690 + AluJb SINE Alu 166 303 -9 2130 134 53 34 chr11 74564784 74565141 -74218331 - THE1B LTR MaLR 0 364 1 270 86 0 0 chr11 74565153 74565188 -74218284 + MER9 LTR ERVK 205 239 -272 341 347 53 29 chr11 74565398 74565778 -74217694 - HAL1b LINE L1 -925 423 35 984 264 47 20 chr11 74569631 74569972 -74213500 - LTR53 LTR ERVL 0 519 170 1840 131 17 14 chr11 74570552 74570849 -74212623 - AluSx SINE Alu -14 298 1 419 265 111 47 chr11 74572641 74572875 -74210597 - MLT1L LTR MaLR -157 458 210 1717 150 0 53 chr11 74573931 74574231 -74209241 - AluJo SINE Alu -28 284 1 1046 205 129 23 chr11 74574232 74574534 -74208938 - L1MB8 LINE L1 0 6178 5845 527 290 35 18 chr11 74574550 74574719 -74208753 + MER8 DNA MER2_type 8 179 -60 228 333 0 0 chr11 74574694 74574751 -74208721 + MER2 DNA MER2_type 282 338 -7 * 1320 256 30 30 chr11 74574756 74574987 -74208485 - L1MB8 LINE L1 -354 5830 5597 1984 133 0 31 chr11 74574987 74575310 -74208162 - AluSq SINE Alu 0 313 1 1320 256 30 30 chr11 74575310 74575507 -74207965 - L1MB8 LINE L1 -586 5598 5402 575 327 5 28 chr11 74575855 74576072 -74207400 + MIR SINE MIR 16 227 -35 451 212 91 23 chr11 74578012 74578144 -74205328 - L1MB5 LINE L1 -278 5896 5756 1537 254 17 67 chr11 74578561 74579126 -74204346 + L1MB7 LINE L1 5597 6134 -50 366 363 0 0 chr11 74579622 74579948 -74203524 + (TG)n Simple_repeat Simple_repeat 1 326 0 798 221 0 2 chr11 74581195 74581613 -74201859 + (TCCA)n Simple_repeat Simple_repeat 1 417 0 663 75 0 0 chr11 74581738 74581832 -74201640 - AluJ/FRAM SINE Alu 0 312 219 456 291 154 4 chr11 74581850 74582084 -74201388 - L1ME2 LINE L1 -37 6127 5859 1067 135 5 21 chr11 74582104 74582297 -74201175 - AluJb SINE Alu -1 311 122 1135 280 84 24 chr11 74582306 74582817 -74200655 - L1ME2 LINE L1 -359 5805 5264 221 182 18 0 chr11 74582850 74582905 -74200567 + (TA)n Simple_repeat Simple_repeat 2 57 0 3887 203 24 49 chr11 74582920 74583900 -74199572 - LTR5 LTR ERVK -14 955 1 180 111 67 0 chr11 74583900 74583945 -74199527 + (TA)n Simple_repeat Simple_repeat 1 48 0 875 280 80 54 chr11 74583982 74584238 -74199234 - L1ME2 LINE L1 -968 5178 4930 2092 116 0 0 chr11 74584238 74584540 -74198932 + AluSx SINE Alu 1 302 -10 1939 125 11 0 chr11 74584540 74584827 -74198645 + AluSp SINE Alu 11 300 -13 875 280 80 54 chr11 74584827 74585122 -74198350 - L1ME2 LINE L1 -1215 4931 4612 387 237 0 52 chr11 74585161 74585258 -74198214 - MLT2B1 LTR ERVL -46 474 383 832 185 0 0 chr11 74585451 74585586 -74197886 + FLAM_A SINE Alu 8 142 0 919 174 24 12 chr11 74585646 74585837 -74197635 - AluJb SINE Alu 0 305 113 810 181 0 7 chr11 74585873 74586017 -74197455 - AluJo SINE Alu -169 143 1 2027 119 0 0 chr11 74586631 74586951 -74196521 - AluSc SINE Alu 0 309 1 2558 58 0 0 chr11 74587586 74587897 -74195575 - AluY SINE Alu 0 311 1 2053 65 0 4 chr11 74588377 74588639 -74194833 + AluY SINE Alu 37 297 -14 533 184 82 53 chr11 74588937 74589068 -74194404 - MER21B LTR ERV1 -99 832 623 1436 109 9 23 chr11 74589068 74589289 -74194183 + THE1B LTR MaLR 1 218 -146 416 193 0 0 chr11 74589389 74589472 -74194000 + AluS SINE Alu 228 310 0 1102 147 102 0 chr11 74590263 74590460 -74193012 - AluJb SINE Alu -15 297 81 194 279 35 12 chr11 74590766 74590852 -74192620 - L2 LINE L2 -1631 1683 1596 317 192 41 0 chr11 74591306 74591379 -74192093 - Charlie2 DNA MER1_type -2557 305 230 1623 234 45 11 chr11 74591604 74592073 -74191399 - MLT1D LTR MaLR -20 485 1 21 0 0 0 chr11 74592098 74592119 -74191353 + GC_rich Low_complexity Low_complexity 1 21 0 440 257 59 33 chr11 74593003 74593155 -74190317 + MER20 DNA MER1_type 17 172 -47 2546 237 90 33 chr11 74593917 74594498 -74188974 - L1M4 LINE L1 -1026 5120 4471 1917 131 0 23 chr11 74594498 74594804 -74188668 - AluSx SINE Alu -13 299 1 2546 237 90 33 chr11 74594804 74595098 -74188374 - L1M4 LINE L1 -1675 4471 4195 621 139 76 35 chr11 74595108 74595252 -74188220 + Tigger3(Golem) DNA MER2_type 2286 2435 -594 516 183 10 0 chr11 74595276 74595380 -74188092 - L1M4 LINE L1 -1070 5076 4972 252 125 88 12 chr11 74595380 74595460 -74188012 + Tigger3(Golem) DNA MER2_type 2436 2521 -508 933 83 8 23 chr11 74595460 74595593 -74187879 + AluSq/x SINE Alu 1 131 -181 2730 178 33 4 chr11 74595606 74596124 -74187348 + Tigger3(Golem) DNA MER2_type 2497 3029 0 2077 72 3 31 chr11 74596145 74596465 -74187007 - AluSp SINE Alu 0 312 1 2805 234 41 8 chr11 74596471 74597258 -74186214 - L1M4 LINE L1 -2814 3332 2520 196 349 12 0 chr11 74597335 74597418 -74186054 - L2 LINE L2 -53 3219 3136 829 221 66 114 chr11 74597753 74597882 -74185590 - MLT1C LTR MaLR -9 458 324 2192 145 3 6 chr11 74597882 74598220 -74185252 - MER1B DNA MER1_type 0 337 1 829 221 66 114 chr11 74598220 74598474 -74184998 - MLT1C LTR MaLR -143 324 90 1800 172 3 10 chr11 74598474 74598788 -74184684 - AluJb SINE Alu 0 312 1 829 221 66 114 chr11 74598788 74598861 -74184611 - MLT1C LTR MaLR -377 90 15 3239 202 66 7 chr11 74600304 74601001 -74182471 - L1MA8 LINE L1 -2 6289 5552 1727 153 40 10 chr11 74601376 74601677 -74181795 + AluJb SINE Alu 1 310 -2 725 237 13 69 chr11 74601966 74602198 -74181274 + MER20 DNA MER1_type 1 219 0 294 243 29 0 chr11 74606336 74606406 -74177066 - MER58 DNA MER1_type -89 252 181 985 156 138 39 chr11 74606503 74606785 -74176687 - Charlie1 DNA MER1_type 0 2761 2452 982 217 103 15 chr11 74606781 74607044 -74176428 - Charlie1 DNA MER1_type -1397 1364 1079 * 2797 88 98 5 chr11 74607119 74607529 -74175943 + LTR7 LTR ERV1 1 448 -2 2930 143 7 7 chr11 74608186 74608634 -74174838 + MER83 LTR ERV1 1 448 0 339 282 74 108 chr11 74608708 74609098 -74174374 + L1MEc LINE L1 361 737 -5984 3058 254 69 29 chr11 74609460 74610771 -74172701 + L1MEc LINE L1 2264 4728 -1812 * 4341 149 24 23 chr11 74610765 74611633 -74171839 + L1MA7 LINE L1 5226 6092 -199 343 320 35 25 chr11 74611872 74612072 -74171400 - L1MEd LINE L1 -5604 515 314 43166 34 3 3 chr11 74612663 74618814 -74164658 + L1PA4 LINE L1 9 6155 0 1062 236 25 36 chr11 74618805 74619165 -74164307 + L1MA9 LINE L1 5473 5828 -484 * 2425 89 7 0 chr11 74619166 74619459 -74164013 + AluSx SINE Alu 1 295 -17 276 149 0 0 chr11 74619530 74619577 -74163895 + (CATA)n Simple_repeat Simple_repeat 2 48 0 228 67 0 0 chr11 74620363 74620393 -74163079 + (TGAA)n Simple_repeat Simple_repeat 2 31 0 205 161 113 97 chr11 74621214 74621276 -74162196 - MIR SINE MIR -142 120 58 748 206 37 16 chr11 74621385 74621574 -74161898 + L1MB8 LINE L1 5986 6178 0 401 310 310 3 chr11 74621580 74621883 -74161589 - L2 LINE L2 -2314 1000 605 1082 201 8 64 chr11 74622152 74622401 -74161071 - AluJb SINE Alu -77 235 1 203 192 0 19 chr11 74622453 74622505 -74160967 + T-rich Low_complexity Low_complexity 2 52 0 1319 194 153 53 chr11 74624710 74625070 -74158402 - MSTD LTR MaLR 0 396 1 1709 213 0 0 chr11 74625298 74625589 -74157883 + AluJo SINE Alu 3 293 -19 1864 145 119 49 chr11 74625600 74625758 -74157714 + MSTB LTR MaLR 1 147 -279 2291 110 3 0 chr11 74625758 74626050 -74157422 + AluSp SINE Alu 1 293 -20 1864 145 119 49 chr11 74626050 74626278 -74157194 + MSTB LTR MaLR 147 414 -12 8349 189 23 9 chr11 74626283 74627906 -74155566 + MSTB-int LTR MaLR 1 1646 -5 2014 159 78 3 chr11 74627910 74628294 -74155178 + MSTB LTR MaLR 1 413 -13 222 350 0 17 chr11 74629042 74629222 -74154250 + (CTG)n Simple_repeat Simple_repeat 2 178 0 2154 120 7 0 chr11 74630168 74630460 -74153012 + AluSx SINE Alu 1 294 -18 508 278 98 36 chr11 74630702 74631008 -74152464 + L1MC4a LINE L1 6542 6866 -942 1178 105 7 0 chr11 74631008 74631160 -74152312 + AluSx SINE Alu 1 153 -159 1823 137 4 0 chr11 74631166 74631422 -74152050 + AluSq SINE Alu 46 302 -11 440 161 55 47 chr11 74631707 74631867 -74151605 + L1MC5 LINE L1 2896 7203 -758 655 291 27 19 chr11 74631997 74632317 -74151155 + MLT1I LTR MaLR 53 405 -4 30 27 0 0 chr11 74632653 74632690 -74150782 + GC_rich Low_complexity Low_complexity 1 37 0 306 0 0 0 chr11 74632711 74632745 -74150727 + (A)n Simple_repeat Simple_repeat 1 34 0 2288 107 0 0 chr11 74632751 74633040 -74150432 + AluSx SINE Alu 3 291 -21 24 0 0 0 chr11 74633474 74633498 -74149974 + AT_rich Low_complexity Low_complexity 1 24 0 1281 206 86 19 chr11 74635192 74635551 -74147921 - MLT1B LTR MaLR 0 390 8 324 241 36 44 chr11 74635756 74635893 -74147579 - MLT1A2 LTR MaLR 0 374 239 1449 114 5 0 chr11 74636147 74636348 -74147124 + AluSg/x SINE Alu 95 296 -14 1188 209 85 36 chr11 74636659 74636777 -74146695 - MER21B LTR ERV1 -109 754 643 2508 117 28 14 chr11 74636777 74637136 -74146336 + THE1B LTR MaLR 1 364 0 1188 209 85 36 chr11 74637136 74637200 -74146272 - MER21B LTR ERV1 -220 643 584 2929 189 65 41 chr11 74637200 74637882 -74145590 - LTR34 LTR ERV1 0 699 2 1188 209 85 36 chr11 74637882 74638028 -74145444 - MER21B LTR ERV1 -279 584 409 316 230 80 0 chr11 74638166 74638266 -74145206 - MER21B LTR ERV1 -658 205 98 243 266 0 16 chr11 74638350 74638414 -74145058 - MER21B LTR ERV1 -778 85 23 2213 123 3 0 chr11 74638566 74638859 -74144613 + AluSg SINE Alu 1 294 -16 4608 85 93 8 chr11 74639259 74639896 -74143576 - LTR8 LTR ERV1 0 691 1 314 110 0 110 chr11 74639963 74640036 -74143436 + MER72 LTR ERV1 1 65 -657 2516 127 30 36 chr11 74640037 74640225 -74143247 - MER4E LTR ERV1 0 766 578 4604 119 47 39 chr11 74640225 74640998 -74142474 + MER4E LTR ERV1 1 779 0 2516 127 30 36 chr11 74640998 74641405 -74142067 - MER4E LTR ERV1 -188 578 2 899 268 43 1 chr11 74641406 74641769 -74141703 + MER72 LTR ERV1 72 486 -236 726 145 21 69 chr11 74641771 74641916 -74141556 - LTR12 LTR ERV1 -236 478 341 287 237 26 0 chr11 74641922 74641998 -74141474 - LTR30 LTR ERV1 -121 601 524 616 196 162 35 chr11 74641998 74642227 -74141245 - LTR12 LTR ERV1 -456 258 1 1151 192 12 4 chr11 74642227 74642467 -74141005 + MER72 LTR ERV1 481 722 0 370 203 268 34 chr11 74642849 74643083 -74140389 + MLT1H1 LTR MaLR 1 288 -297 195 270 32 16 chr11 74643431 74643494 -74139978 - L2 LINE L2 -519 2795 2732 233 366 35 7 chr11 74644085 74644227 -74139245 - MIR SINE MIR -58 204 59 184 89 22 44 chr11 74645658 74645703 -74137769 + (TGAA)n Simple_repeat Simple_repeat 4 47 0 4187 231 64 23 chr11 74646095 74646364 -74137108 + L1M4 LINE L1 3969 4226 -1952 315 0 0 0 chr11 74646364 74646399 -74137073 + (CA)n Simple_repeat Simple_repeat 2 36 0 4187 231 64 23 chr11 74646399 74647574 -74135898 + L1M4 LINE L1 4226 5466 -712 911 189 23 11 chr11 74649500 74649713 -74133759 + FRAM SINE Alu 1 214 0 959 246 50 27 chr11 74650078 74650338 -74133134 + AluJo SINE Alu 1 266 -46 731 208 101 140 chr11 74651324 74651839 -74131633 + LTR42 LTR ERVL 1 495 0 480 324 0 0 chr11 74652168 74652344 -74131128 + (TG)n Simple_repeat Simple_repeat 1 176 0 330 244 0 0 chr11 74652403 74652575 -74130897 + (TG)n Simple_repeat Simple_repeat 2 173 0 485 180 11 0 chr11 74653309 74653398 -74130074 + L1MC1 LINE L1 6243 6332 -1 420 320 11 34 chr11 74653481 74653659 -74129813 - L3 LINE CR1 -609 968 795 373 289 16 8 chr11 74654549 74654670 -74128802 - MER58B DNA MER1_type 0 341 220 254 182 0 65 chr11 74654698 74654775 -74128697 + L1MA10 LINE L1 6263 6334 0 433 366 81 34 chr11 74655335 74655753 -74127719 + ERVL LTR ERVL 1737 2174 -2822 399 21 0 0 chr11 74655781 74655829 -74127643 + (CA)n Simple_repeat Simple_repeat 2 49 0 843 323 50 22 chr11 74655898 74656464 -74127008 + ERVL LTR ERVL 2341 2929 -2725 936 302 83 18 chr11 74656552 74656999 -74126473 + ERVL LTR ERVL 3052 3527 -2127 626 244 72 16 chr11 74657671 74657864 -74125608 + MER69 DNA AcHobo 371 574 -652 416 246 71 27 chr11 74657844 74658027 -74125445 + MER69 DNA AcHobo 1999 2189 -337 * 379 246 4 4 chr11 74659129 74659397 -74124075 + (CA)n Simple_repeat Simple_repeat 1 268 0 213 230 0 0 chr11 74659460 74659534 -74123938 + (CA)n Simple_repeat Simple_repeat 1 74 0 693 231 91 132 chr11 74659885 74660401 -74123071 - LTR42 LTR ERVL 0 495 1 280 325 0 0 chr11 74661285 74661442 -74122030 + (CAG)n Simple_repeat Simple_repeat 1 157 0 1226 216 51 12 chr11 74661510 74661765 -74121707 - AluJb SINE Alu -47 265 1 869 198 0 12 chr11 74662121 74662283 -74121189 - FRAM SINE Alu -16 160 1 266 345 0 0 chr11 74663997 74664168 -74119304 + (CAG)n Simple_repeat Simple_repeat 1 171 0 1937 147 147 11 chr11 74665042 74665417 -74118055 - MSTB LTR MaLR 0 426 1 2014 171 0 0 chr11 74665427 74665736 -74117736 - AluJo SINE Alu -3 309 1 509 185 19 23 chr11 74665964 74666100 -74117372 + MSTD LTR MaLR 1 131 -243 2282 155 70 5 chr11 74668087 74668487 -74114985 - MSTB LTR MaLR 0 426 1 2905 172 49 5 chr11 74668492 74669043 -74114429 - MSTB-int LTR MaLR -5 1646 1072 233 318 159 5 chr11 74669062 74669263 -74114209 + L2 LINE L2 769 1000 -2314 692 152 14 7 chr11 74669270 74669408 -74114064 - L1MB8 LINE L1 0 6178 6040 368 253 11 0 chr11 74669440 74669527 -74113945 + MER70A LTR ERVL 3 90 -382 2855 163 45 32 chr11 74669531 74670132 -74113340 + L1MA5 LINE L1 5342 5950 -350 263 157 0 0 chr11 74670127 74670178 -74113294 + L1MA5 LINE L1 6244 6294 -6 * 1706 199 64 0 chr11 74670196 74670553 -74112919 + MER70A LTR ERVL 68 447 -25 3037 203 41 27 chr11 74670562 74671049 -74112423 - L1MB8 LINE L1 -191 5987 5508 1459 222 10 3 chr11 74671049 74671355 -74112117 - AluJo SINE Alu 0 312 5 3037 203 41 27 chr11 74671355 74671572 -74111900 - L1MB8 LINE L1 -670 5508 5295 5449 130 48 3 chr11 74671572 74672122 -74111350 + L1PA16 LINE L1 4934 5458 -708 198 118 0 0 chr11 74672122 74672156 -74111316 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 5449 130 48 3 chr11 74672156 74672798 -74110674 + L1PA16 LINE L1 5458 6162 -4 3037 203 41 27 chr11 74672798 74673359 -74110113 - L1MB8 LINE L1 -883 5295 4699 2408 97 3 0 chr11 74673359 74673669 -74109803 - AluY SINE Alu 0 311 1 3037 203 41 27 chr11 74673669 74673852 -74109620 - L1MB8 LINE L1 -1479 4699 4520 1030 206 5 0 chr11 74673852 74674051 -74109421 - MLT1B LTR MaLR -3 387 188 339 136 0 0 chr11 74674051 74674110 -74109362 + (GA)n Simple_repeat Simple_repeat 1 59 0 463 295 54 12 chr11 74674116 74674282 -74109190 - MLT1B LTR MaLR -201 173 1 453 191 64 0 chr11 74674330 74674424 -74109048 - L1MB8 LINE L1 -1782 4364 4265 1828 162 21 10 chr11 74674440 74674730 -74108742 + AluSx SINE Alu 1 293 -19 2714 119 46 23 chr11 74674885 74675323 -74108149 + MER83 LTR ERV1 1 448 0 279 326 69 0 chr11 74675323 74675467 -74108005 + L1MC/D LINE L1 5445 5598 -2210 1867 254 9 21 chr11 74676139 74676659 -74106813 - L1MA9 LINE L1 -38 6274 5758 455 316 71 0 chr11 74676661 74676873 -74106599 + L1MA9 LINE L1 5933 6159 -153 427 179 0 58 chr11 74676876 74677066 -74106406 + (CA)n Simple_repeat Simple_repeat 2 180 0 348 223 83 25 chr11 74677066 74677187 -74106285 + L1MA9 LINE L1 6147 6274 -38 296 252 85 73 chr11 74677867 74678113 -74105359 + SN5 Other centromeric 1 249 -206 354 91 0 0 chr11 74678410 74678465 -74105007 + L1MC1 LINE L1 6276 6330 -3 375 343 25 45 chr11 74678483 74678728 -74104744 - L3 LINE CR1 -535 1042 803 2800 3 0 0 chr11 74678764 74679058 -74104414 + AluYa5 SINE Alu 1 294 -17 21 57 0 0 chr11 74679608 74679643 -74103829 + AT_rich Low_complexity Low_complexity 1 35 0 1916 126 4 4 chr11 74679652 74679914 -74103558 + AluSx SINE Alu 3 264 -48 301 230 109 23 chr11 74680143 74680317 -74103155 - HAL1b LINE L1 -415 933 745 458 307 48 12 chr11 74680318 74680569 -74102903 - HAL1b LINE L1 -651 697 438 976 113 0 0 chr11 74680689 74680822 -74102650 - AluSp SINE Alu -180 133 1 317 245 105 35 chr11 74680827 74680970 -74102502 - HsTC2 DNA Tc2 -118 1780 1628 1185 220 2 83 chr11 74681008 74681191 -74102281 + L1MA4 LINE L1 5767 5902 -398 1601 182 0 4 chr11 74681191 74681471 -74102001 + AluSx SINE Alu 1 279 -33 1185 220 2 83 chr11 74681471 74681683 -74101789 + L1MA4 LINE L1 5902 6130 -170 2143 118 16 3 chr11 74681762 74682066 -74101406 - AluSp SINE Alu -5 308 1 1847 252 28 8 chr11 74682111 74683106 -74100366 + L1MB3 LINE L1 4818 5832 -351 798 142 0 64 chr11 74683107 74683248 -74100224 + AluSq/x SINE Alu 4 135 -178 219 125 0 0 chr11 74683480 74683520 -74099952 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 926 211 32 50 chr11 74683608 74683636 -74099836 + L1MB3 LINE L1 5879 5906 -277 2030 143 0 0 chr11 74683636 74683929 -74099543 + AluSx SINE Alu 3 295 -17 926 211 32 50 chr11 74683929 74684180 -74099292 + L1MB3 LINE L1 5906 6153 -30 24 0 0 0 chr11 74684207 74684231 -74099241 + AT_rich Low_complexity Low_complexity 1 24 0 2998 218 19 78 chr11 74684690 74685719 -74097753 + LTR5 LTR ERVK 1 969 0 373 322 70 37 chr11 74686043 74686257 -74097215 - MIR SINE MIR -10 252 32 2119 106 6 47 chr11 74686651 74686972 -74096500 + AluSg SINE Alu 1 308 -2 284 255 20 10 chr11 74688093 74688191 -74095281 + L1M4 LINE L1 4624 4722 -1424 288 77 0 0 chr11 74688196 74688235 -74095237 + (TA)n Simple_repeat Simple_repeat 2 40 0 348 257 73 59 chr11 74688237 74688540 -74094932 - L1M4 LINE L1 -3189 2957 2651 246 269 214 66 chr11 74688618 74688800 -74094672 - MLT1J2 LTR MaLR -2 448 240 444 150 102 47 chr11 74688873 74689000 -74094472 - MLT1J1 LTR MaLR -312 134 1 350 315 31 8 chr11 74689008 74689138 -74094334 - L1M4 LINE L1 -3594 2552 2420 238 324 83 41 chr11 74689214 74689359 -74094113 - MIR3 SINE MIR -54 154 4 4724 128 298 81 chr11 74689411 74690805 -74092667 - pTR5 LTR ERV1 0 2438 743 180 0 0 0 chr11 74691829 74691849 -74091623 + (TTG)n Simple_repeat Simple_repeat 2 21 0 257 287 287 14 chr11 74692099 74692388 -74091084 + L2 LINE L2 2243 2610 -704 644 180 8 16 chr11 74692489 74692617 -74090855 - SATR1 Satellite Satellite -153 317 191 21 36 0 0 chr11 74692700 74692728 -74090744 + AT_rich Low_complexity Low_complexity 1 28 0 27281 98 15 13 chr11 74692964 74697014 -74086458 + HERVE LTR ERV1 1108 5165 -2648 1975 180 117 10 chr11 74697014 74698484 -74084988 - SATR1 Satellite Satellite 0 1626 1 1794 215 74 73 chr11 74698514 74699383 -74084089 - SATR1 Satellite Satellite 0 869 1 1119 193 218 44 chr11 74699421 74700210 -74083262 - SATR1 Satellite Satellite -1 926 1 852 221 278 3 chr11 74700238 74700569 -74082903 - SATR1 Satellite Satellite -1 469 48 1437 108 42 5 chr11 74700573 74700787 -74082685 - AluSq SINE Alu -91 222 1 713 228 46 0 chr11 74702688 74702885 -74080587 + MER6B DNA MER2_type 5 210 0 382 216 34 0 chr11 74702990 74703078 -74080394 - MER5B DNA MER1_type -6 172 82 1326 226 123 35 chr11 74703520 74704299 -74079173 - SATR1 Satellite Satellite -4 847 1 21 100 0 0 chr11 74704345 74704415 -74079057 + AT_rich Low_complexity Low_complexity 1 70 0 213 189 11 53 chr11 74704497 74704592 -74078880 + (TTA)n Simple_repeat Simple_repeat 1 91 0 25621 98 12 12 chr11 74704644 74708423 -74075049 + HERVE LTR ERV1 1108 4886 -2927 664 221 30 91 chr11 74708661 74708892 -74074580 - MER20 DNA MER1_type -2 217 1 440 310 54 22 chr11 74708921 74709105 -74074367 + MIR SINE MIR 41 230 -32 2292 118 0 0 chr11 74709108 74709413 -74074059 - AluSx SINE Alu -7 305 1 251 373 25 0 chr11 74710592 74710753 -74072719 - L2 LINE L2 -1026 2288 2124 1467 126 43 0 chr11 74710753 74710960 -74072512 - AluSx SINE Alu -96 216 1 25 31 0 0 chr11 74710960 74710992 -74072480 + AT_rich Low_complexity Low_complexity 1 32 0 2071 129 7 14 chr11 74711190 74711485 -74071987 + AluSx SINE Alu 3 295 -17 30 59 0 0 chr11 74711485 74711536 -74071936 + AT_rich Low_complexity Low_complexity 1 51 0 2678 120 60 34 chr11 74711560 74711884 -74071588 - L1MA8 LINE L1 -3 6288 5945 1831 183 6 3 chr11 74711884 74712195 -74071277 - AluJo SINE Alu 0 312 1 2678 120 60 34 chr11 74712195 74712371 -74071101 - L1MA8 LINE L1 -346 5945 5775 877 196 52 10 chr11 74712778 74712972 -74070500 + MER58A DNA MER1_type 9 210 -14 1898 152 24 0 chr11 74713933 74714223 -74069249 + AluSx SINE Alu 3 299 -13 1463 137 39 113 chr11 74714836 74715171 -74068301 + AluSg SINE Alu 1 310 0 2072 72 25 0 chr11 74715267 74715546 -74067926 - L1PA8 LINE L1 -1 6171 5886 380 375 65 26 chr11 74715577 74715916 -74067556 - L1ME4a LINE L1 -156 5965 5614 308 302 75 50 chr11 74716169 74716328 -74067144 + MIR SINE MIR 30 192 -70 262 178 0 0 chr11 74716922 74716967 -74066505 - MER53 DNA DNA 0 189 145 180 0 0 0 chr11 74716976 74716996 -74066476 + (T)n Simple_repeat Simple_repeat 1 20 0 211 244 35 81 chr11 74717384 74717470 -74066002 + MIR SINE MIR 25 106 -156 918 163 88 0 chr11 74717488 74717703 -74065769 - L1MA7 LINE L1 -6 6285 6052 * 2525 154 13 18 chr11 74717699 74718146 -74065326 + L1MA7 LINE L1 5615 6059 -232 231 263 168 36 chr11 74718146 74718283 -74065189 + MIR SINE MIR 93 247 -15 483 100 0 0 chr11 74718444 74718514 -74064958 + (TATG)n Simple_repeat Simple_repeat 4 73 0 881 150 0 21 chr11 74718514 74718654 -74064818 - FRAM SINE Alu -30 146 10 1190 149 11 0 chr11 74718666 74718840 -74064632 - AluSx SINE Alu -7 305 130 473 94 0 0 chr11 74719715 74719779 -74063693 - AluSx SINE Alu -174 139 76 1129 187 0 29 chr11 74719783 74719992 -74063480 - AluJo SINE Alu -109 203 1 1019 262 127 28 chr11 74720065 74720497 -74062975 - L1MB5 LINE L1 -54 6120 5646 1493 201 13 3 chr11 74720500 74720655 -74062817 + L1M4 LINE L1 5338 5490 -684 2125 142 0 7 chr11 74720655 74720965 -74062507 + AluSx SINE Alu 1 308 -4 1493 201 13 3 chr11 74720965 74721122 -74062350 + L1M4 LINE L1 5490 5653 -521 269 119 0 0 chr11 74721770 74721812 -74061660 - Alu SINE Alu -11 290 249 1312 118 10 0 chr11 74721912 74722116 -74061356 + HERVE LTR ERV1 4960 5165 -2648 2029 180 102 32 chr11 74722116 74724255 -74059217 - SATR1 Satellite Satellite -1 2288 1 709 230 284 9 chr11 74724283 74724614 -74058858 - SATR1 Satellite Satellite -1 469 48 1308 139 27 36 chr11 74724618 74724841 -74058631 - AluSq SINE Alu -91 222 2 701 219 51 0 chr11 74726736 74726932 -74056540 + MER6B DNA MER2_type 5 210 0 381 212 73 93 chr11 74727037 74727188 -74056284 - MER5B DNA MER1_type -6 172 25 1155 324 9 89 chr11 74727338 74727662 -74055810 - AluSq SINE Alu -1 302 5 1945 163 10 0 chr11 74727874 74728163 -74055309 + AluSx SINE Alu 3 294 -18 378 220 113 93 chr11 74728515 74728601 -74054871 - L1ME3A LINE L1 0 6170 6087 1791 145 7 42 chr11 74728601 74728911 -74054561 + AluJo SINE Alu 1 299 -13 378 220 113 93 chr11 74728911 74729059 -74054413 - L1ME3A LINE L1 -83 6087 5926 775 226 23 32 chr11 74729059 74729280 -74054192 + MER20 DNA MER1_type 1 219 0 378 220 113 93 chr11 74729280 74729335 -74054137 - L1ME3A LINE L1 -244 5926 5874 414 0 0 0 chr11 74730435 74730481 -74052991 + (CA)n Simple_repeat Simple_repeat 1 46 0 589 346 20 16 chr11 74730495 74730798 -74052674 - MLT1I LTR MaLR -3 406 103 584 130 110 0 chr11 74731195 74731295 -74052177 - AluJo SINE Alu -160 152 42 210 128 0 0 chr11 74731364 74731403 -74052069 + (TCTCTG)n Simple_repeat Simple_repeat 4 42 0 2460 81 0 28 chr11 74732067 74732387 -74051085 + AluY SINE Alu 1 311 0 2156 110 7 7 chr11 74732625 74732933 -74050539 - AluSc SINE Alu -1 308 1 188 378 0 0 chr11 74733170 74733244 -74050228 + MIR3 SINE MIR 2 75 -133 1059 241 88 7 chr11 74733250 74733544 -74049928 - ERVL LTR ERVL -3615 2149 1832 2142 110 14 7 chr11 74733645 74733936 -74049536 - AluSc SINE Alu -16 293 1 259 253 118 63 chr11 74734015 74734379 -74049093 + L1MC5 LINE L1 7548 7931 -30 1902 137 22 11 chr11 74734390 74734692 -74048780 + AluJb SINE Alu 1 305 0 195 148 70 0 chr11 74734975 74735021 -74048451 + MER5B DNA MER1_type 17 70 -119 295 230 174 3 chr11 74735139 74735251 -74048221 - MIR SINE MIR -49 159 31 225 0 0 0 chr11 74735594 74735619 -74047853 + (T)n Simple_repeat Simple_repeat 1 25 0 2064 128 0 46 chr11 74735786 74736113 -74047359 - AluSp SINE Alu -1 312 1 1181 216 8 70 chr11 74736299 74736482 -74046990 + L1MA4 LINE L1 5767 5915 -385 1661 176 0 3 chr11 74736482 74736766 -74046706 + AluSx SINE Alu 1 283 -29 1181 216 8 70 chr11 74736766 74736970 -74046502 + L1MA4 LINE L1 5915 6130 -170 2162 112 3 3 chr11 74737050 74737353 -74046119 - AluSp SINE Alu -10 303 1 1832 255 29 7 chr11 74737398 74738393 -74045079 + L1MB3 LINE L1 4818 5834 -349 1906 142 0 31 chr11 74738394 74738711 -74044761 + AluSx SINE Alu 6 312 0 189 0 0 0 chr11 74738859 74738880 -74044592 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1244 211 15 41 chr11 74738885 74738973 -74044499 + L1MB3 LINE L1 5822 5911 -272 1902 138 35 0 chr11 74738973 74739256 -74044216 + AluSx SINE Alu 3 295 -17 1244 211 15 41 chr11 74739256 74739508 -74043964 + L1MB3 LINE L1 5911 6153 -30 24 32 0 0 chr11 74739528 74739559 -74043913 + AT_rich Low_complexity Low_complexity 1 31 0 3263 223 17 62 chr11 74740021 74741036 -74042436 + LTR5 LTR ERVK 1 969 0 1698 204 110 23 chr11 74741309 74742306 -74041166 - SATR1 Satellite Satellite -20 1083 1 369 254 11 28 chr11 74742418 74742599 -74040873 + (TTA)n Simple_repeat Simple_repeat 1 178 0 28 48 0 0 chr11 74742651 74742693 -74040779 + AT_rich Low_complexity Low_complexity 1 42 0 2109 227 76 12 chr11 74742693 74743662 -74039810 - SATR1 Satellite Satellite -131 1030 1 2314 110 7 0 chr11 74744453 74744762 -74038710 - AluSx SINE Alu -1 311 1 211 348 18 36 chr11 74744872 74744984 -74038488 - MIR SINE MIR -40 222 113 199 407 25 8 chr11 74745181 74745299 -74038173 + L2 LINE L2 2990 3109 -163 507 283 92 11 chr11 74745427 74745611 -74037861 - MIR SINE MIR -52 210 12 215 299 0 65 chr11 74745593 74745670 -74037802 + L2 LINE L2 3241 3312 -1 * 232 283 0 0 chr11 74745684 74745737 -74037735 + (TGGG)n Simple_repeat Simple_repeat 1 53 0 495 257 0 0 chr11 74745737 74745908 -74037564 + (TGGA)n Simple_repeat Simple_repeat 1 171 0 608 170 7 0 chr11 74745957 74746092 -74037380 + (TGGA)n Simple_repeat Simple_repeat 1 136 0 211 349 70 23 chr11 74747656 74747785 -74035687 - MIR3 SINE MIR -63 145 11 2155 118 3 13 chr11 74748749 74749063 -74034409 + AluSq SINE Alu 1 311 -2 1585 145 8 15 chr11 74749075 74749337 -74034135 + AluSx SINE Alu 1 260 -52 1240 198 33 135 chr11 74749489 74749948 -74033524 + MLT2B1 LTR ERVL 3 414 0 180 0 0 0 chr11 74750337 74750357 -74033115 + (TGG)n Simple_repeat Simple_repeat 2 21 0 573 89 0 0 chr11 74750525 74750604 -74032868 + MADE1 DNA Mariner 2 80 0 1897 191 116 2 chr11 74751479 74752194 -74031278 - SATR1 Satellite Satellite 0 796 1 43 47 0 0 chr11 74752194 74752258 -74031214 + AT_rich Low_complexity Low_complexity 1 64 0 2039 201 107 2 chr11 74752283 74753397 -74030075 - SATR1 Satellite Satellite -1 1231 1 278 272 5 9 chr11 74753509 74753597 -74029875 + MIR SINE MIR 62 147 -63 317 309 63 78 chr11 74753602 74754013 -74029459 - L2 LINE L2 -18 3254 2850 2215 115 13 7 chr11 74754292 74754597 -74028875 + AluSq SINE Alu 1 307 -6 268 281 97 18 chr11 74755054 74755168 -74028304 - L2 LINE L2 -13 3300 3178 317 295 111 73 chr11 74755643 74756084 -74027388 + L2 LINE L2 2804 3261 -11 333 254 67 79 chr11 74756600 74756765 -74026707 - MER5A DNA MER1_type -3 186 24 1530 144 5 0 chr11 74757306 74757521 -74025951 + AluSx SINE Alu 1 216 -96 2161 122 7 7 chr11 74757739 74758035 -74025437 - AluSq SINE Alu -17 296 1 204 311 96 15 chr11 74758084 74758219 -74025253 + L2 LINE L2 3125 3270 -43 288 259 12 35 chr11 74758349 74758434 -74025038 - MER5A DNA MER1_type 0 189 107 415 296 176 0 chr11 74758440 74758599 -74024873 + L2 LINE L2 2515 2701 -613 645 149 0 37 chr11 74758605 74758712 -74024760 - AluSg/x SINE Alu -17 295 193 424 276 8 31 chr11 74759691 74759818 -74023654 + MIR SINE MIR 8 131 -131 1054 47 62 0 chr11 74809876 74810004 -73973468 - LTR5 LTR ERVK -833 136 1 1921 145 0 4 chr11 74810347 74810623 -73972849 + AluSg SINE Alu 1 275 -35 231 36 0 0 chr11 74810631 74810659 -73972813 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 439 226 50 75 chr11 74810712 74810871 -73972601 - L2 LINE L2 0 3313 3159 935 212 69 0 chr11 74811030 74811247 -73972225 - LTR16A1 LTR ERVL 0 457 226 465 228 176 0 chr11 74811875 74812011 -73971461 - MIR SINE MIR -72 190 31 1568 159 67 25 chr11 74812016 74812299 -73971173 - AluJo SINE Alu -17 295 1 588 81 0 0 chr11 74812309 74812383 -73971089 - Alu SINE Alu -13 298 225 371 298 16 37 chr11 74812570 74812758 -73970714 - MLT1K LTR MaLR -307 281 98 1133 104 0 0 chr11 74812951 74813095 -73970377 + AluSp/q SINE Alu 159 302 -11 1440 167 12 43 chr11 74813190 74813335 -73970137 + AluJo SINE Alu 1 136 -176 1996 164 0 0 chr11 74813335 74813633 -73969839 + AluSx SINE Alu 1 298 -14 1440 167 12 43 chr11 74813633 74813744 -73969728 + AluJo SINE Alu 136 249 -63 335 349 23 8 chr11 74813747 74813876 -73969596 - L1MC4 LINE L1 -1340 6702 6572 570 244 50 12 chr11 74813892 74814052 -73969420 + MER104 DNA Tc2 11 176 -4 2272 112 0 0 chr11 74814930 74815217 -73968255 + AluSx SINE Alu 1 287 -25 746 11 0 11 chr11 74815217 74815309 -73968163 + (TATAA)n Simple_repeat Simple_repeat 4 94 0 207 100 0 0 chr11 74815310 74815340 -73968132 + (CAAAA)n Simple_repeat Simple_repeat 4 33 0 1807 180 3 22 chr11 74815478 74815795 -73967677 + AluJo SINE Alu 1 311 -1 321 318 54 8 chr11 74815821 74815950 -73967522 - MIR SINE MIR -32 230 96 1651 152 0 16 chr11 74815970 74816220 -73967252 + AluJo SINE Alu 1 246 -66 2306 142 55 18 chr11 74816220 74816656 -73966816 + MER66B LTR ERV1 1 452 -34 4018 124 90 88 chr11 74816656 74818022 -73965450 + pTR5 LTR ERV1 742 2437 -1 916 222 52 16 chr11 74818253 74818501 -73964971 + L1MB7 LINE L1 5670 5926 -258 219 186 0 0 chr11 74818501 74818544 -73964928 + (CATATA)n Simple_repeat Simple_repeat 2 44 0 1234 131 25 81 chr11 74818544 74818756 -73964716 + L1MB7 LINE L1 5918 6112 -72 1881 157 3 7 chr11 74818756 74819055 -73964417 - AluJb SINE Alu -14 298 1 1234 131 25 81 chr11 74819055 74819125 -73964347 + L1MB7 LINE L1 6112 6184 0 1738 180 3 41 chr11 74819136 74819276 -73964196 + AluJb SINE Alu 1 145 -167 1881 118 66 28 chr11 74819276 74819563 -73963909 + AluSx SINE Alu 6 303 -9 1738 180 3 41 chr11 74819563 74819739 -73963733 + AluJb SINE Alu 145 305 -7 2233 93 0 7 chr11 74819853 74820143 -73963329 + AluSx SINE Alu 1 288 -24 2088 124 7 10 chr11 74820784 74821082 -73962390 - AluSx SINE Alu -15 297 1 1574 169 45 77 chr11 74821279 74821592 -73961880 + AluJo SINE Alu 1 303 -9 623 229 101 28 chr11 74821754 74821972 -73961500 + MIR SINE MIR 29 262 0 1379 184 128 0 chr11 74823073 74823339 -73960133 + AluJo SINE Alu 1 300 -2 548 162 86 8 chr11 74824127 74824244 -73959228 + MER45A DNA AcHobo 1 126 -52 1550 170 58 7 chr11 74824245 74824522 -73958950 + AluJo SINE Alu 1 291 -21 2081 153 0 0 chr11 74824528 74824836 -73958636 + AluSq SINE Alu 1 308 -5 1317 191 38 80 chr11 74824863 74825108 -73958364 - MLT1C LTR MaLR -45 422 199 2069 126 3 7 chr11 74825108 74825401 -73958071 - AluSx SINE Alu -20 292 1 1317 191 38 80 chr11 74825401 74825554 -73957918 - MLT1C LTR MaLR -268 199 41 1464 204 28 11 chr11 74825574 74825859 -73957613 - AluJo SINE Alu -22 290 1 2192 95 11 0 chr11 74826515 74826798 -73956674 + AluSc SINE Alu 1 286 -23 2380 78 3 7 chr11 74826892 74827198 -73956274 + AluSq SINE Alu 1 305 -8 413 291 71 33 chr11 74828244 74828426 -73955046 + L2 LINE L2 3122 3310 -3 202 261 54 22 chr11 74829413 74829505 -73953967 + (CCCTAG)n Simple_repeat Simple_repeat 2 96 0 * 229 294 26 33 chr11 74829451 74829604 -73953868 + (CCCCAG)n Simple_repeat Simple_repeat 2 153 0 199 104 42 83 chr11 74830614 74830662 -73952810 - MIR SINE MIR -85 177 132 853 229 70 5 chr11 74830683 74830897 -73952575 + MIR SINE MIR 13 240 -22 928 240 103 42 chr11 74830918 74831401 -73952071 - L2 LINE L2 -1 3312 2777 2123 135 0 0 chr11 74832838 74833135 -73950337 + AluSx SINE Alu 1 297 -15 201 230 118 37 chr11 74833240 74833396 -73950076 + L2 LINE L2 2841 2990 -282 382 242 186 25 chr11 74834080 74834398 -73949074 + LTR33A LTR ERVL 139 507 -16 2027 159 3 0 chr11 74834410 74834718 -73948754 - AluSx SINE Alu -3 309 1 718 165 50 8 chr11 74835216 74835337 -73948135 - FLAM_A SINE Alu -7 126 1 302 290 75 64 chr11 74835627 74835779 -73947693 + MIR SINE MIR 26 175 -68 1987 112 45 14 chr11 74835860 74835991 -73947481 + AluSg SINE Alu 3 128 -182 2246 112 14 0 chr11 74835991 74836287 -73947185 + AluSq SINE Alu 1 300 -13 1987 112 45 14 chr11 74836287 74836442 -73947030 + AluSg SINE Alu 128 298 -12 491 328 45 0 chr11 74836499 74836697 -73946775 - L1MD2 LINE L1 -351 6008 5802 269 214 153 38 chr11 74838440 74838571 -73944901 + MIR SINE MIR 9 154 -54 262 275 153 8 chr11 74838722 74838853 -73944619 - MIR SINE MIR -32 230 81 1891 159 3 13 chr11 74839129 74839465 -73944007 + AluJb SINE Alu 1 333 0 1954 147 3 10 chr11 74839567 74839866 -73943606 - AluSx SINE Alu -15 297 1 663 214 8 0 chr11 74839902 74840019 -73943453 + FLAM_A SINE Alu 7 124 -18 1101 108 24 0 chr11 74840097 74840264 -73943208 - MER30 DNA MER1_type -55 175 5 1942 117 16 55 chr11 74840400 74840708 -73942764 + AluSx SINE Alu 3 298 -14 1039 174 155 0 chr11 74840708 74840927 -73942545 + AluJb SINE Alu 43 295 -17 477 0 0 0 chr11 74841139 74841192 -73942280 + (TG)n Simple_repeat Simple_repeat 2 54 0 2144 109 3 3 chr11 74841192 74841477 -73941995 - AluSx SINE Alu -27 285 1 778 250 40 0 chr11 74843410 74843610 -73939862 + MER58A DNA MER1_type 1 208 -16 410 90 194 0 chr11 74844838 74844905 -73938567 + MADE1 DNA Mariner 1 80 0 608 123 0 0 chr11 74845440 74845581 -73937891 - AluSg/x SINE Alu 0 339 199 2055 91 4 18 chr11 74845582 74845879 -73937593 + AluSq SINE Alu 16 308 0 1821 125 32 11 chr11 74845958 74846237 -73937235 + AluSx SINE Alu 1 285 -27 1501 68 34 0 chr11 74847034 74847239 -73936233 + L1PA10 LINE L1 5957 6168 0 298 136 0 0 chr11 74847267 74847311 -73936161 - Alu SINE Alu -258 44 1 * 6021 171 38 3 chr11 74847311 74848476 -73934996 + HSMAR2 DNA Mariner 97 1301 -1 199 282 59 47 chr11 74851149 74851234 -73932238 + L2 LINE L2 3117 3202 -70 221 274 14 0 chr11 74852572 74852645 -73930827 + (TTA)n Simple_repeat Simple_repeat 3 76 0 2307 118 0 0 chr11 74853179 74853531 -73929941 - AluSg SINE Alu 0 310 1 247 293 0 12 chr11 74855399 74855481 -73927991 + (TAA)n Simple_repeat Simple_repeat 1 81 0 21 0 0 0 chr11 74855781 74855802 -73927670 + GC_rich Low_complexity Low_complexity 1 21 0 400 204 10 39 chr11 74856385 74856488 -73926984 + L1MC3 LINE L1 6040 6139 -1646 25 65 0 0 chr11 74856527 74856573 -73926899 + AT_rich Low_complexity Low_complexity 1 46 0 181 286 0 71 chr11 74856663 74856733 -73926739 - MER5B DNA MER1_type -11 167 103 197 209 75 30 chr11 74857025 74857092 -73926380 - L3b LINE CR1 -263 1320 1251 1329 137 128 50 chr11 74859455 74859776 -73923696 + MER4A LTR ERV1 1 346 -318 606 141 196 75 chr11 74859781 74860031 -73923441 + MER4C LTR ERV1 157 445 -20 21 57 0 0 chr11 74861684 74861719 -73921753 + AT_rich Low_complexity Low_complexity 1 35 0 2195 125 0 0 chr11 74864298 74864593 -73918879 + AluSx SINE Alu 1 295 -17 211 329 0 0 chr11 74864921 74864991 -73918481 + (TATATG)n Simple_repeat Simple_repeat 6 75 0 31 0 0 0 chr11 74865030 74865061 -73918411 + AT_rich Low_complexity Low_complexity 1 31 0 2218 100 10 0 chr11 74866141 74866442 -73917030 - AluSp SINE Alu -9 304 1 25 0 0 0 chr11 74867233 74867258 -73916214 + AT_rich Low_complexity Low_complexity 1 25 0 527 268 24 53 chr11 74867593 74867802 -73915670 + MER3 DNA MER1_type 7 209 0 288 200 0 0 chr11 74867760 74867810 -73915662 - MER3 DNA MER1_type -120 89 40 * 1513 253 114 36 chr11 74868000 74868657 -73914815 + MER50 LTR ERV1 27 734 0 201 315 45 22 chr11 74869081 74869170 -73914302 - L2 LINE L2 -5 3308 3218 1279 222 102 32 chr11 74869347 74869689 -73913783 + MST-int LTR MaLR 551 916 -735 1587 126 84 45 chr11 74869689 74870023 -73913449 - THE1B LTR MaLR -17 347 1 1546 161 34 0 chr11 74870023 74870315 -73913157 + THE1-int LTR MaLR 861 1162 -418 2877 152 36 2 chr11 74870317 74870810 -73912662 + L1PA16 LINE L1 5647 6156 -10 1688 60 0 82 chr11 74870833 74871066 -73912406 + AluY SINE Alu 88 301 -10 1369 181 13 13 chr11 74871066 74871357 -73912115 + L1MA10 LINE L1 5322 5615 -676 3801 93 11 0 chr11 74871357 74871896 -73911576 + L1PA10 LINE L1 5497 6041 -127 2134 210 25 29 chr11 74871888 74872446 -73911026 + L1MA10 LINE L1 5779 6334 0 * 470 279 69 53 chr11 74872469 74872716 -73910756 + MLT1J LTR MaLR 207 457 -54 234 91 0 0 chr11 74873023 74873056 -73910416 + (CCCCCT)n Simple_repeat Simple_repeat 1 33 0 213 183 0 0 chr11 74873719 74873779 -73909693 + CT-rich Low_complexity Low_complexity 1 60 0 255 31 0 0 chr11 74874973 74875005 -73908467 + (TG)n Simple_repeat Simple_repeat 1 32 0 3392 65 0 0 chr11 74875268 74875668 -73907804 - LTR5 LTR ERVK -290 679 280 6555 77 12 10 chr11 74875768 74877109 -73906363 + SVA Other Other 120 1384 -2 215 245 38 104 chr11 74877121 74877227 -73906245 + MER5B DNA MER1_type 76 174 -4 191 282 26 122 chr11 74877232 74877388 -73906084 - MIR3 SINE MIR -48 160 20 198 320 0 0 chr11 74878903 74878953 -73904519 - MIR SINE MIR -67 141 92 337 344 31 57 chr11 74879556 74879748 -73903724 + MIR3 SINE MIR 5 191 -17 3028 177 21 0 chr11 74879934 74880492 -73902980 - L1PA16 LINE L1 -9 6157 5588 294 311 41 49 chr11 74880626 74880748 -73902724 - L2 LINE L2 -2 3270 3150 354 256 93 8 chr11 74881622 74881751 -73901721 - Charlie8 DNA MER1_type -1910 507 368 234 98 0 24 chr11 74881774 74881815 -73901657 + (TG)n Simple_repeat Simple_repeat 2 41 0 366 215 134 40 chr11 74881946 74882095 -73901377 - Charlie8 DNA MER1_type -2167 250 88 237 83 0 0 chr11 74882108 74882144 -73901328 + (CA)n Simple_repeat Simple_repeat 1 36 0 225 159 0 0 chr11 74882441 74882485 -73900987 + CT-rich Low_complexity Low_complexity 1 44 0 2109 125 10 3 chr11 74882575 74882878 -73900594 + AluSg SINE Alu 1 305 -5 1400 220 47 62 chr11 74883351 74883864 -73899608 - MLT1D LTR MaLR 0 505 1 4537 256 47 67 chr11 74884355 74885671 -73897801 + L1M2 LINE L1 1 1271 -5578 2076 96 3 55 chr11 74885671 74885983 -73897489 + AluSp SINE Alu 13 308 -5 4537 256 47 67 chr11 74885983 74886480 -73896992 + L1M2 LINE L1 1271 1777 -5072 424 184 39 10 chr11 74886483 74886586 -73896886 + L1M2 LINE L1 1917 2022 -4827 1941 156 10 5 chr11 74886599 74886996 -73896476 + L1P LINE L1 4993 5391 -755 957 304 47 17 chr11 74887019 74887549 -73895923 + L1PBa LINE L1 6 551 -6312 1679 196 59 5 chr11 74887601 74887988 -73895484 + L1PBa LINE L1 638 1045 -5818 3013 116 19 113 chr11 74888003 74888641 -73894831 - LTR12 LTR ERV1 -134 580 3 687 230 11 48 chr11 74888724 74888994 -73894478 - pTR5 LTR ERV1 -1410 1028 769 303 217 0 0 chr11 74889005 74889074 -73894398 + L1PBa LINE L1 1095 1163 -5700 2116 202 76 25 chr11 74889094 74889688 -73893784 + L1MB7 LINE L1 5551 6174 -10 24 0 0 0 chr11 74889746 74889770 -73893702 + AT_rich Low_complexity Low_complexity 1 24 0 282 196 0 0 chr11 74890050 74890101 -73893371 - 5S rRNA rRNA -70 51 1 24 53 0 0 chr11 74890179 74890217 -73893255 + AT_rich Low_complexity Low_complexity 1 38 0 492 332 61 39 chr11 74890262 74890623 -73892849 - L1M4 LINE L1 -3328 3316 2948 889 174 26 0 chr11 74890628 74890823 -73892649 - L1 LINE L1 -1350 4796 4597 5299 96 52 18 chr11 74890865 74892106 -73891366 - L1PA8 LINE L1 0 6172 4894 1044 115 6 0 chr11 74892102 74892258 -73891214 - L1PA8 LINE L1 -1922 4224 4068 * 7290 125 9 1 chr11 74892259 74893494 -73889978 - L1PA8 LINE L1 -2587 3559 2315 1154 108 18 0 chr11 74893494 74893661 -73889811 - AluSp SINE Alu -143 170 1 1796 208 64 29 chr11 74893746 74894294 -73889178 - L1MA9 LINE L1 -46 6266 5700 1709 206 31 0 chr11 74894532 74894857 -73888615 + Tigger7 DNA MER2_type 7 341 -2146 25 31 0 0 chr11 74894864 74894896 -73888576 + AT_rich Low_complexity Low_complexity 1 32 0 503 252 84 0 chr11 74894901 74895020 -73888452 + Tigger7 DNA MER2_type 2358 2486 -1 4401 209 80 69 chr11 74895025 74896766 -73886706 - L1M4 LINE L1 -4833 1709 2 661 229 10 89 chr11 74896962 74897202 -73886270 + MLT1G1 LTR MaLR 2 206 -389 4627 182 26 24 chr11 74897239 74899053 -73884419 + L1PA15 LINE L1 4124 5932 -233 1892 112 0 8 chr11 74899053 74899312 -73884160 + AluSc SINE Alu 39 295 -14 4627 182 26 24 chr11 74899312 74899519 -73883953 + L1PA15 LINE L1 5932 6137 -28 491 251 54 0 chr11 74899625 74899792 -73883680 - L1M4 LINE L1 -1297 4849 4674 2383 55 0 26 chr11 74900359 74900668 -73882804 + AluY SINE Alu 1 301 -10 5061 175 30 11 chr11 74901991 74904049 -73879423 - L1PA16 LINE L1 -9 6808 4716 21 36 0 0 chr11 74904246 74904274 -73879198 + AT_rich Low_complexity Low_complexity 1 28 0 220 402 55 0 chr11 74904287 74904414 -73879058 - MIR3 SINE MIR -64 144 11 1822 133 65 9 chr11 74904512 74904834 -73878638 + L1MB1 LINE L1 5828 6167 -1 483 87 0 0 chr11 74907672 74907741 -73875731 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 2442 58 0 0 chr11 74909983 74910277 -73873195 - AluY SINE Alu -15 296 3 421 116 0 0 chr11 74910378 74910447 -73873025 - MER41B LTR ERV1 -88 547 479 407 236 0 28 chr11 74910571 74910677 -73872795 - MER20 DNA MER1_type -4 215 113 216 97 0 0 chr11 74910703 74910734 -73872738 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1253 291 47 49 chr11 74910913 74911340 -73872132 - MER110-int LTR ERV1 -1760 2887 2461 2117 96 57 0 chr11 74911340 74911622 -73871850 + AluSg SINE Alu 1 298 -12 1253 291 47 49 chr11 74911622 74911882 -73871590 - MER110-int LTR ERV1 -2186 2461 2202 324 226 126 16 chr11 74911890 74912080 -73871392 + L1MEc LINE L1 1974 2184 -4212 800 283 8 19 chr11 74912086 74912351 -73871121 + L1M3a LINE L1 7 268 -5687 5378 220 29 21 chr11 74912389 74913894 -73869578 - L1PA16 LINE L1 -3253 3544 2052 3687 62 2 2 chr11 74913894 74914364 -73869108 - L1PA5 LINE L1 0 6154 5685 5378 220 29 21 chr11 74914364 74914740 -73868732 - L1PA16 LINE L1 -4745 2052 1628 1723 136 118 21 chr11 74914740 74915072 -73868400 - THE1B LTR MaLR 0 364 1 5378 220 29 21 chr11 74915072 74915295 -73868177 - L1PA16 LINE L1 -5169 1628 1408 5311 168 21 5 chr11 74915339 74916512 -73866960 + L1MA7 LINE L1 5099 6290 -1 1263 256 32 7 chr11 74916525 74917002 -73866470 + L1MB7 LINE L1 5313 5889 -295 737 161 109 23 chr11 74917034 74917208 -73866264 + MLT1F1 LTR MaLR 379 567 0 2094 70 0 15 chr11 74917318 74917588 -73865884 + AluY SINE Alu 35 300 -11 597 304 54 39 chr11 74917793 74918352 -73865120 - L1M4 LINE L1 -2828 3318 2752 855 329 55 59 chr11 74918355 74918875 -73864597 - L2 LINE L2 -256 3057 2543 1888 140 3 32 chr11 74918875 74919189 -73864283 + AluSq SINE Alu 1 305 -8 855 329 55 59 chr11 74919189 74919489 -73863983 - L2 LINE L2 -770 2543 2243 286 201 49 98 chr11 74919916 74920100 -73863372 + L1ME4a LINE L1 5712 5886 -235 2020 153 7 0 chr11 74920586 74920894 -73862578 + AluSx SINE Alu 2 311 -1 593 101 0 0 chr11 74921395 74921474 -73861998 - MADE1 DNA Mariner 0 80 2 2004 135 0 0 chr11 74922195 74922504 -73860968 + AluSx SINE Alu 1 309 0 1609 169 29 45 chr11 74923552 74923865 -73859607 + AluJb SINE Alu 1 308 -4 26 0 0 0 chr11 74924387 74924413 -73859059 + AT_rich Low_complexity Low_complexity 1 26 0 1499 191 105 6 chr11 74924448 74924805 -73858667 - L1MB7 LINE L1 -1 6168 5785 291 234 51 0 chr11 74924794 74924881 -73858591 + L1MB7 LINE L1 6085 6175 -3 * 4164 225 17 9 chr11 74925131 74926167 -73857305 - L1 LINE L1 -2769 3377 2333 1520 240 28 57 chr11 74926168 74926573 -73856899 - MLT1B LTR MaLR 0 426 1 1953 212 55 25 chr11 74926573 74927104 -73856368 + L1MCa LINE L1 1087 1737 -4689 1628 132 98 4 chr11 74927104 74927370 -73856102 - AluSx SINE Alu -21 291 1 1953 212 55 25 chr11 74927370 74927475 -73855997 + L1MCa LINE L1 1737 1837 -4589 4844 207 15 10 chr11 74927476 74928532 -73854940 + L1 LINE L1 4031 5091 -1055 594 307 145 14 chr11 74928701 74929121 -73854351 + L2 LINE L2 1357 1831 -1483 1459 228 116 31 chr11 74929645 74930521 -73852951 - SATR1 Satellite Satellite 0 950 1 21 36 0 0 chr11 74930567 74930595 -73852877 + AT_rich Low_complexity Low_complexity 1 28 0 291 225 6 55 chr11 74930612 74930794 -73852678 + (TTA)n Simple_repeat Simple_repeat 3 175 0 27805 107 13 11 chr11 74930873 74934922 -73848550 + HERVE LTR ERV1 1108 5165 -2648 2137 190 119 11 chr11 74934922 74936163 -73847309 - SATR1 Satellite Satellite 0 1375 1 1983 182 109 27 chr11 74936191 74937073 -73846399 - SATR1 Satellite Satellite 0 954 1 841 205 224 11 chr11 74937101 74937369 -73846103 - SATR1 Satellite Satellite -1 469 145 1359 131 27 27 chr11 74937436 74937658 -73845814 - AluSq SINE Alu -91 222 1 731 208 51 5 chr11 74939546 74939743 -73843729 + MER6B DNA MER2_type 5 210 0 318 278 28 28 chr11 74939851 74939995 -73843477 - MER5B DNA MER1_type -9 169 26 1855 139 0 46 chr11 74940139 74940463 -73843009 - AluSp SINE Alu -4 309 1 289 266 105 35 chr11 74940468 74940611 -73842861 - HsTC2 DNA Tc2 -118 1780 1628 1256 228 3 72 chr11 74940649 74940832 -73842640 + L1MA4 LINE L1 5767 5910 -390 1568 189 0 4 chr11 74940832 74941113 -73842359 + AluSx SINE Alu 1 280 -32 1256 228 3 72 chr11 74941113 74941320 -73842152 + L1MA4 LINE L1 5910 6130 -170 2135 106 3 3 chr11 74941399 74941700 -73841772 - AluSp SINE Alu -12 301 1 3073 237 25 38 chr11 74941745 74942738 -73840734 + L1MB3 LINE L1 4818 5822 -361 1911 127 3 37 chr11 74942738 74943061 -73840411 + AluSx SINE Alu 1 312 0 3073 237 25 38 chr11 74943061 74943163 -73840309 + L1MB3 LINE L1 5822 5924 -259 2028 138 0 0 chr11 74943163 74943453 -73840019 + AluSx SINE Alu 3 292 -20 3073 237 25 38 chr11 74943453 74943708 -73839764 + L1MB3 LINE L1 5924 6153 -30 32 0 0 0 chr11 74943728 74943760 -73839712 + AT_rich Low_complexity Low_complexity 1 32 0 3187 215 17 61 chr11 74944205 74945219 -73838253 + LTR5 LTR ERVK 1 969 0 1995 127 0 19 chr11 74946152 74946468 -73837004 + AluSg SINE Alu 1 310 0 230 252 59 52 chr11 74946829 74946964 -73836508 + L2 LINE L2 3137 3272 0 2090 122 0 3 chr11 74947022 74947326 -73836146 - AluY SINE Alu -8 303 1 195 42 0 0 chr11 74948475 74948499 -73834973 + (T)n Simple_repeat Simple_repeat 1 24 0 1122 226 206 44 chr11 74949024 74950449 -73833023 - SATR1 Satellite Satellite -1 1655 1 1421 235 201 20 chr11 74950486 74952977 -73830495 - SATR1 Satellite Satellite -3 2940 1 21 36 0 0 chr11 74953023 74953051 -73830421 + AT_rich Low_complexity Low_complexity 1 28 0 228 232 11 51 chr11 74953070 74953247 -73830225 + (TTA)n Simple_repeat Simple_repeat 3 172 0 26757 103 13 11 chr11 74953326 74957158 -73826314 + HERVE LTR ERV1 1108 4944 -2869 2023 196 80 29 chr11 74957165 74958198 -73825274 - SATR1 Satellite Satellite 0 1086 1 2134 124 3 3 chr11 74958218 74958524 -73824948 + AluSg SINE Alu 5 310 0 7733 111 28 28 chr11 74958533 74959240 -73824232 + Tigger1 DNA MER2_type 1004 1710 -708 2171 122 3 7 chr11 74959240 74959543 -73823929 + AluSx SINE Alu 1 302 -10 7733 111 28 28 chr11 74959543 74960002 -73823470 + Tigger1 DNA MER2_type 1710 2173 -245 2505 69 0 0 chr11 74960002 74960306 -73823166 + AluY SINE Alu 1 304 -7 7733 111 28 28 chr11 74960306 74960342 -73823130 + Tigger1 DNA MER2_type 2172 2207 -211 506 156 189 0 chr11 74960342 74960432 -73823040 + Tigger1 DNA MER2_type 2312 2418 0 237 65 0 0 chr11 74960791 74960822 -73822650 + (TG)n Simple_repeat Simple_repeat 2 32 0 2159 123 0 0 chr11 74961837 74962149 -73821323 - AluSq SINE Alu 0 312 1 2103 134 7 0 chr11 74963119 74963417 -73820055 - AluJb SINE Alu -12 300 1 233 207 134 12 chr11 74963480 74963562 -73819910 + MER91C DNA MER1_type 27 118 -22 342 220 64 9 chr11 74964070 74964179 -73819293 - MIR SINE MIR -70 192 78 1715 83 0 9 chr11 74964225 74964441 -73819031 - AluSg/x SINE Alu -13 296 83 2552 74 0 0 chr11 74964441 74964752 -73818720 - AluY SINE Alu 0 311 1 2566 47 3 25 chr11 74964775 74965093 -73818379 - AluY SINE Alu 0 311 1 2368 84 13 0 chr11 74965141 74965440 -73818032 - AluSp SINE Alu -10 303 1 233 378 0 0 chr11 74965588 74965670 -73817802 + MIR SINE MIR 49 130 -78 892 136 0 0 chr11 74965675 74965800 -73817672 + AluSg/x SINE Alu 156 280 -30 202 74 0 0 chr11 74965800 74965827 -73817645 + (TAAA)n Simple_repeat Simple_repeat 3 172 0 1449 168 30 82 chr11 74965827 74966009 -73817463 - AluJo SINE Alu -11 301 140 1662 167 44 0 chr11 74966009 74966279 -73817193 - AluJb SINE Alu -30 282 1 1449 168 30 82 chr11 74966279 74966400 -73817072 - AluJo SINE Alu -172 140 14 1987 128 0 3 chr11 74966718 74967008 -73816464 + AluSg SINE Alu 5 293 -17 1638 170 7 3 chr11 74967123 74967437 -73816035 - AluJo SINE Alu 0 315 1 267 254 217 15 chr11 74967450 74967590 -73815882 + MER20B DNA MER1_type 47 214 -5 2347 85 0 0 chr11 74968385 74968690 -73814782 - AluY SINE Alu -6 305 1 273 276 105 19 chr11 74968852 74968957 -73814515 + L2 LINE L2 3157 3270 -2 1039 145 0 0 chr11 74969067 74969226 -73814246 + FRAM SINE Alu 1 158 -18 2346 65 0 19 chr11 74969232 74969540 -73813932 + AluY SINE Alu 1 302 -9 253 173 27 27 chr11 74969586 74969661 -73813811 - L1MC5 LINE L1 -50 7911 7837 323 348 109 42 chr11 74969794 74970171 -73813301 + L2 LINE L2 2869 3270 -2 21 0 0 0 chr11 74970448 74970469 -73813003 + AT_rich Low_complexity Low_complexity 1 21 0 1426 58 0 2 chr11 74970482 74970739 -73812733 + AluY SINE Alu 1 305 -6 1660 154 14 0 chr11 74970825 74971132 -73812340 + AluJb SINE Alu 1 311 0 293 266 0 0 chr11 74971365 74971444 -73812028 + L1 LINE L1 4906 4984 -1162 2081 116 0 0 chr11 74971454 74971782 -73811690 + AluSx SINE Alu 1 328 0 1562 161 25 14 chr11 74971803 74972083 -73811389 + AluJb SINE Alu 1 283 -29 1691 141 46 0 chr11 74972087 74972371 -73811101 + AluSx SINE Alu 1 297 -15 412 297 227 4 chr11 74974551 74974780 -73808692 - L2 LINE L2 0 3272 2993 217 204 0 23 chr11 74975430 74975474 -73807998 + MIR3 SINE MIR 157 199 -9 2109 110 0 7 chr11 74975669 74975970 -73807502 - AluSp SINE Alu -14 299 1 278 308 81 95 chr11 74976410 74976621 -73806851 - L2 LINE L2 -50 3222 3015 643 286 70 21 chr11 74977028 74977269 -73806203 - MIR SINE MIR -8 254 2 336 335 59 13 chr11 74977403 74977555 -73805917 - MIR SINE MIR -74 188 30 230 262 37 93 chr11 74978199 74978306 -73805166 + MIR3 SINE MIR 60 160 -48 531 289 8 16 chr11 74978532 74978660 -73804812 + L2 LINE L2 3136 3262 -10 202 347 53 11 chr11 74978681 74978776 -73804696 - MIR SINE MIR -1 261 163 186 304 96 35 chr11 74979046 74979161 -73804311 - L2 LINE L2 -14 3258 3137 388 213 130 19 chr11 74979604 74979712 -73803760 + MER117 DNA MER1_type 2 121 -76 941 229 45 25 chr11 74979719 74979774 -73803698 - MIR SINE MIR 0 262 210 1829 150 37 0 chr11 74979774 74980068 -73803404 - AluJb SINE Alu -7 305 1 941 229 45 25 chr11 74980068 74980256 -73803216 - MIR SINE MIR -52 210 14 257 349 151 0 chr11 74980365 74980471 -73803001 + L2 LINE L2 3137 3258 -14 * 439 243 29 10 chr11 74980465 74980568 -73802904 + MIR3 SINE MIR 83 187 -21 183 42 0 0 chr11 74980640 74980664 -73802808 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 1976 112 7 0 chr11 74980673 74980967 -73802505 - AluY SINE Alu 0 311 16 2335 57 0 17 chr11 74981231 74981529 -73801943 - AluY SINE Alu -18 293 1 308 247 97 32 chr11 74981669 74981762 -73801710 + L2 LINE L2 3172 3270 -2 398 252 37 59 chr11 74982018 74982153 -73801319 + L2 LINE L2 3177 3308 -5 1105 105 52 6 chr11 74982153 74982325 -73801147 - AluSg/x SINE Alu -10 302 123 337 337 63 17 chr11 74982363 74982538 -73800934 - L3 LINE CR1 -85 1492 1310 244 285 32 24 chr11 74983078 74983150 -73800322 - MIR SINE MIR -3 259 184 2274 82 7 0 chr11 74983150 74983454 -73800018 - AluSp SINE Alu -7 306 1 244 285 32 24 chr11 74983454 74983504 -73799968 - MIR SINE MIR -78 184 136 2162 102 3 0 chr11 74983744 74984039 -73799433 - AluSx SINE Alu -16 296 1 468 199 87 34 chr11 74984378 74984528 -73798944 - MIR SINE MIR -3 205 52 333 354 74 77 chr11 74984621 74984957 -73798515 - L2 LINE L2 -19 3253 2919 251 316 86 34 chr11 74984995 74985112 -73798360 - L2 LINE L2 -17 3255 3133 215 318 0 0 chr11 74985223 74985286 -73798186 - L2 LINE L2 -218 3054 2992 673 341 37 44 chr11 74985448 74986118 -73797354 - L2 LINE L2 0 3272 2546 1110 308 70 21 chr11 74986247 74986766 -73796706 - L2 LINE L2 -5 3308 2741 2300 83 0 3 chr11 74986766 74987067 -73796405 - AluY SINE Alu -10 301 2 1110 308 70 21 chr11 74987067 74987246 -73796226 - L2 LINE L2 -572 2741 2572 427 145 0 0 chr11 74987247 74987316 -73796156 - MLT1A1 LTR MaLR 0 365 297 1876 96 57 7 chr11 74987316 74987596 -73795876 + AluSq SINE Alu 1 294 -19 227 130 0 0 chr11 74987601 74987647 -73795825 - LTR66 LTR ERVL -171 439 394 1574 199 17 23 chr11 74987669 74987971 -73795501 - MLT1A1 LTR MaLR -65 300 1 475 290 8 0 chr11 74987973 74988104 -73795368 - L2 LINE L2 -738 2576 2445 272 204 19 0 chr11 74988159 74988213 -73795259 - L2 LINE L2 -1009 2305 2251 228 258 76 0 chr11 74988219 74988285 -73795187 + MIR SINE MIR 33 103 -105 586 317 97 66 chr11 74988371 74988885 -73794587 - L2 LINE L2 -19 3253 2710 2155 103 0 3 chr11 74988885 74989177 -73794295 + AluSx SINE Alu 1 291 -21 586 317 97 66 chr11 74989177 74989290 -73794182 - L2 LINE L2 -562 2710 2602 1943 133 10 3 chr11 74989823 74990124 -73793348 - AluJo SINE Alu -9 303 1 29 28 0 0 chr11 74990133 74990169 -73793303 + AT_rich Low_complexity Low_complexity 1 36 0 484 193 18 0 chr11 74990551 74990665 -73792807 + L1MB8 LINE L1 5215 5330 -816 1676 170 7 0 chr11 74990666 74990977 -73792495 + AluJo SINE Alu 1 313 0 1561 186 38 71 chr11 74990978 74991230 -73792242 + L1MB8 LINE L1 5672 5906 -272 457 271 8 15 chr11 74991230 74991363 -73792109 - FLAM_A SINE Alu -1 132 1 1561 186 38 71 chr11 74991363 74991535 -73791937 + L1MB8 LINE L1 5906 6082 -96 942 155 0 0 chr11 74991540 74991695 -73791777 - AluSg/x SINE Alu -4 308 154 1934 112 20 0 chr11 74991703 74991999 -73791473 - AluSx SINE Alu -10 302 1 1516 148 93 4 chr11 74992061 74992331 -73791141 + AluJo SINE Alu 1 294 -18 522 297 84 66 chr11 74992427 74992747 -73790725 - L2 LINE L2 -424 2890 2565 2105 115 10 0 chr11 74993069 74993373 -73790099 + AluSx SINE Alu 1 307 -5 303 28 0 0 chr11 74993481 74993517 -73789955 + (A)n Simple_repeat Simple_repeat 1 36 0 7622 111 31 16 chr11 74993520 74994226 -73789246 + Tigger1 DNA MER2_type 1004 1735 -683 2047 122 3 7 chr11 74994226 74994529 -73788943 + AluSx SINE Alu 1 302 -10 7622 111 31 16 chr11 74994529 74994987 -73788485 + Tigger1 DNA MER2_type 1735 2185 -233 2348 72 0 0 chr11 74994987 74995291 -73788181 + AluY SINE Alu 1 304 -7 503 156 189 0 chr11 74995327 74995417 -73788055 + Tigger1 DNA MER2_type 2312 2418 0 237 65 0 0 chr11 74995776 74995807 -73787665 + (TG)n Simple_repeat Simple_repeat 2 32 0 2038 123 0 0 chr11 74996822 74997134 -73786338 - AluSq SINE Alu 0 312 1 212 379 74 0 chr11 74997672 74997767 -73785705 - MIR SINE MIR -58 150 49 1970 137 7 0 chr11 74998105 74998404 -73785068 - AluJb SINE Alu -11 301 1 267 207 134 12 chr11 74998467 74998549 -73784923 + MER91C DNA MER1_type 27 118 -22 400 239 84 21 chr11 74999052 74999194 -73784278 - MIR SINE MIR -65 197 47 2147 51 41 20 chr11 74999212 74999504 -73783968 - AluY SINE Alu -13 298 1 355 255 25 119 chr11 74999517 74999795 -73783677 + L1ME3A LINE L1 5698 5949 -221 1507 177 10 23 chr11 74999884 75000184 -73783288 - AluJo SINE Alu -16 296 1 1341 162 112 23 chr11 75000368 75000671 -73782801 + L1MB2 LINE L1 5813 6142 -29 1565 188 7 10 chr11 75000701 75000993 -73782479 + AluJo SINE Alu 6 296 -16 839 286 118 26 chr11 75001162 75001419 -73782053 + L1MD2 LINE L1 4780 5012 -1347 1699 176 3 0 chr11 75001419 75001708 -73781764 + AluJb SINE Alu 1 290 -22 839 286 118 26 chr11 75001708 75002434 -73781038 + L1MD2 LINE L1 5012 5884 -475 1076 189 38 5 chr11 75002859 75003071 -73780401 - MER20 DNA MER1_type 0 219 1 2151 105 3 0 chr11 75003222 75003517 -73779955 + AluSp SINE Alu 1 296 -17 1787 168 7 0 chr11 75003529 75003821 -73779651 + AluJb SINE Alu 1 294 -18 2241 107 0 0 chr11 75003823 75004133 -73779339 + AluSq SINE Alu 1 310 -3 21 57 0 0 chr11 75004175 75004210 -73779262 + AT_rich Low_complexity Low_complexity 1 35 0 2225 74 0 0 chr11 75004249 75004559 -73778913 - AluY SINE Alu 0 310 1 345 347 36 31 chr11 75004745 75004938 -73778534 - MIR SINE MIR -49 213 20 234 289 22 33 chr11 75005311 75005401 -73778071 - L3b LINE CR1 -103 1480 1392 435 298 98 70 chr11 75005712 75006027 -73777445 + L2 LINE L2 2946 3269 -3 415 344 59 18 chr11 75006039 75006260 -73777212 + L3 LINE CR1 1205 1434 -143 550 312 60 69 chr11 75006354 75006671 -73776801 - L3 LINE CR1 -268 1309 996 11015 92 9 21 chr11 75006789 75008330 -73775142 + HERVE LTR ERV1 3423 4944 -2869 2041 189 84 22 chr11 75008337 75009404 -73774068 - SATR1 Satellite Satellite 0 1133 1 2025 100 0 4 chr11 75009412 75009691 -73773781 + AluSc SINE Alu 27 304 -5 184 268 0 0 chr11 75010012 75010053 -73773419 - MIR3 SINE MIR -5 203 163 2203 98 3 19 chr11 75011054 75011225 -73772247 - AluSx SINE Alu 0 302 130 180 0 0 0 chr11 75011225 75011245 -73772227 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1920 97 17 35 chr11 75011245 75011393 -73772079 - AluSq SINE Alu -28 285 143 2036 68 0 0 chr11 75011393 75011644 -73771828 - AluY SINE Alu -20 291 41 1920 97 17 35 chr11 75011644 75011785 -73771687 - AluSq SINE Alu -170 143 1 2203 98 3 19 chr11 75011785 75011919 -73771553 - AluSx SINE Alu -170 132 1 255 332 17 20 chr11 75013315 75013527 -73769945 + GA-rich Low_complexity Low_complexity 1 211 0 325 241 0 0 chr11 75015364 75015422 -73768050 + AluJ/FLAM SINE Alu 2 59 -243 468 67 0 0 chr11 75015522 75015582 -73767890 - AluY SINE Alu -257 61 2 343 328 26 63 chr11 75015656 75015845 -73767627 + L2 LINE L2 2932 3113 -159 213 322 203 20 chr11 75015847 75016142 -73767330 + L2 LINE L2 2424 2772 -542 1876 144 7 3 chr11 75016298 75016596 -73766876 + AluJb SINE Alu 1 299 -13 186 325 0 65 chr11 75017056 75017133 -73766339 + L2 LINE L2 3117 3188 -84 1858 176 0 0 chr11 75017167 75017462 -73766010 + AluJb SINE Alu 1 295 -17 1854 133 59 4 chr11 75017464 75017735 -73765737 + AluSx SINE Alu 1 286 -26 2179 95 0 24 chr11 75017746 75018041 -73765431 + AluSg1 SINE Alu 1 288 -21 2159 110 3 17 chr11 75018333 75018632 -73764840 + AluSx SINE Alu 1 295 -17 1072 79 0 0 chr11 75018689 75018829 -73764643 - AluY SINE Alu -17 294 155 2110 100 57 0 chr11 75018974 75019254 -73764218 + AluSp SINE Alu 1 296 -17 370 265 36 0 chr11 75019268 75019351 -73764121 - MIR3 SINE MIR -46 162 77 282 30 0 0 chr11 75019484 75019517 -73763955 + AluYa8 SINE Alu 156 188 -112 916 173 0 13 chr11 75019535 75019691 -73763781 + FAM SINE Alu 1 41 -8 4357 159 32 9 chr11 75019693 75020477 -73762995 + L1MB8 LINE L1 5322 6123 -55 993 154 32 86 chr11 75020488 75020561 -73762911 - L1MA7 LINE L1 -4 6287 6212 2179 113 7 0 chr11 75020561 75020852 -73762620 + AluSx SINE Alu 1 293 -19 993 154 32 86 chr11 75020852 75021057 -73762415 - L1MA7 LINE L1 -79 6212 6024 2063 134 3 0 chr11 75021068 75021366 -73762106 - AluJo SINE Alu -13 299 1 391 138 0 0 chr11 75021369 75021434 -73762038 + L1MB8 LINE L1 6111 6175 -3 469 281 163 7 chr11 75021505 75021658 -73761814 - MER5A DNA MER1_type 0 189 13 225 261 14 43 chr11 75022610 75022679 -73760793 - MIR SINE MIR -87 175 109 236 336 30 37 chr11 75022967 75023101 -73760371 - L2 LINE L2 -8 3305 3173 824 208 69 0 chr11 75023105 75023264 -73760208 + MER96 DNA MER1_type? 1 170 -5 699 217 153 0 chr11 75023331 75023488 -73759984 - MER5A DNA MER1_type 0 189 9 247 375 42 6 chr11 75023626 75023794 -73759678 - L2 LINE L2 -292 2980 2807 331 229 14 0 chr11 75024456 75024526 -73758946 + MER20 DNA MER1_type 143 213 -6 239 293 202 85 chr11 75024692 75025044 -73758428 + L2 LINE L2 2831 3223 -49 891 209 60 20 chr11 75025500 75025701 -73757771 + MIR SINE MIR 44 252 -10 890 331 86 59 chr11 75025895 75026571 -73756901 + L3 LINE CR1 757 1450 -127 710 155 142 47 chr11 75026597 75026745 -73756727 + FRAM SINE Alu 1 153 -23 440 298 206 0 chr11 75026790 75026931 -73756541 + L3 LINE CR1 1407 1576 -1 311 259 138 19 chr11 75027047 75027213 -73756259 - MIR SINE MIR -63 145 2 324 279 81 0 chr11 75027312 75027423 -73756049 - L1MC4 LINE L1 -1 8041 7922 22 0 0 0 chr11 75027581 75027603 -73755869 + AT_rich Low_complexity Low_complexity 1 22 0 2288 108 0 0 chr11 75027665 75027970 -73755502 - AluSx SINE Alu -7 305 1 1965 156 3 7 chr11 75029315 75029616 -73753856 + AluJb SINE Alu 4 303 -9 930 208 27 27 chr11 75029616 75029826 -73753646 + L1M4c LINE L1 2286 2498 -3886 449 200 0 0 chr11 75029826 75029901 -73753571 + AluSp SINE Alu 136 210 -103 24 0 0 0 chr11 75029960 75029984 -73753488 + AT_rich Low_complexity Low_complexity 1 24 0 2406 58 14 3 chr11 75030000 75030295 -73753177 - AluY SINE Alu -12 299 2 5088 191 33 31 chr11 75030739 75031373 -73752099 - L1M3 LINE L1 -533 5647 5016 2187 97 7 0 chr11 75031373 75031661 -73751811 + AluSg SINE Alu 1 290 -20 5088 191 33 31 chr11 75031661 75032506 -73750966 - L1M3 LINE L1 -1164 5016 4168 1517 181 0 36 chr11 75032506 75032809 -73750663 - AluJb SINE Alu -18 294 3 1913 138 31 0 chr11 75033286 75033577 -73749895 - AluJb SINE Alu -12 300 1 493 251 107 51 chr11 75033737 75034050 -73749422 - L1MC/D LINE L1 -740 5434 5312 2309 93 3 0 chr11 75034055 75034345 -73749127 - AluSp SINE Alu -22 291 1 529 223 62 62 chr11 75034351 75034513 -73748959 - HAL1 LINE L1 0 2507 2343 1672 159 10 40 chr11 75034513 75034815 -73748657 - AluJo SINE Alu -19 293 1 529 223 62 62 chr11 75034815 75034845 -73748627 - HAL1 LINE L1 -163 2344 2315 25 0 0 0 chr11 75034861 75034886 -73748586 + AT_rich Low_complexity Low_complexity 1 25 0 2728 29 0 0 chr11 75034891 75035198 -73748274 - AluYb8 SINE Alu -11 307 1 39 38 0 0 chr11 75035233 75035286 -73748186 + AT_rich Low_complexity Low_complexity 1 53 0 1478 104 0 0 chr11 75035368 75035560 -73747912 - AluSg/x SINE Alu -4 306 115 974 94 31 0 chr11 75035619 75035746 -73747726 - AluSc SINE Alu -177 132 2 261 121 43 172 chr11 75035810 75035926 -73747546 - HAL1 LINE L1 -333 2174 2074 1991 124 10 3 chr11 75036095 75036386 -73747086 - AluSx SINE Alu -19 293 1 268 241 126 0 chr11 75036784 75036871 -73746601 + L1ME LINE L1 5561 5658 -504 2275 119 0 0 chr11 75036900 75037211 -73746261 - AluSx SINE Alu -1 311 1 1742 164 46 0 chr11 75037213 75037493 -73745979 - AluJo SINE Alu -19 293 1 240 226 0 48 chr11 75037523 75037585 -73745887 - MIR SINE MIR -3 259 201 1130 150 0 6 chr11 75037593 75037760 -73745712 - AluSg/x SINE Alu -13 297 132 2169 96 3 10 chr11 75037760 75038053 -73745419 - AluSq SINE Alu -22 291 1 564 298 29 23 chr11 75038071 75038242 -73745230 - MIR SINE MIR -89 173 2 514 294 95 27 chr11 75038242 75038603 -73744869 - L3 LINE CR1 -195 1382 922 2047 139 3 10 chr11 75038638 75038941 -73744531 - AluJb SINE Alu -11 301 1 2038 101 14 7 chr11 75038953 75039231 -73744241 - AluSp SINE Alu -15 298 19 2324 86 0 7 chr11 75039308 75039609 -73743863 - AluSx SINE Alu -13 299 1 183 100 0 0 chr11 75040084 75040114 -73743358 + (GTGTG)n Simple_repeat Simple_repeat 1 30 0 2158 142 10 0 chr11 75040251 75040560 -73742912 + AluJb SINE Alu 1 312 0 207 0 0 0 chr11 75040710 75040733 -73742739 + (A)n Simple_repeat Simple_repeat 1 23 0 186 325 0 65 chr11 75041217 75041294 -73742178 + L2 LINE L2 3117 3188 -84 1858 176 0 0 chr11 75041328 75041623 -73741849 + AluJb SINE Alu 1 295 -17 1854 133 59 4 chr11 75041625 75041896 -73741576 + AluSx SINE Alu 1 286 -26 2189 95 0 24 chr11 75041907 75042203 -73741269 + AluSg1 SINE Alu 1 289 -20 2214 104 3 17 chr11 75042495 75042793 -73740679 + AluSx SINE Alu 1 294 -18 1072 79 0 0 chr11 75042850 75042990 -73740482 - AluY SINE Alu -17 294 155 2110 100 57 0 chr11 75043135 75043415 -73740057 + AluSp SINE Alu 1 296 -17 370 265 36 0 chr11 75043429 75043512 -73739960 - MIR3 SINE MIR -46 162 77 282 30 0 0 chr11 75043645 75043678 -73739794 + AluYa8 SINE Alu 156 188 -112 1107 136 0 0 chr11 75043695 75043849 -73739623 + FAM SINE Alu 1 41 -8 4357 159 32 9 chr11 75043851 75044635 -73738837 + L1MB8 LINE L1 5322 6123 -55 1012 151 32 86 chr11 75044646 75044719 -73738753 - L1MA7 LINE L1 -4 6287 6212 2141 123 3 0 chr11 75044719 75045011 -73738461 + AluSx SINE Alu 1 293 -19 1012 151 32 86 chr11 75045011 75045216 -73738256 - L1MA7 LINE L1 -79 6212 6024 2063 134 3 0 chr11 75045227 75045525 -73737947 - AluJo SINE Alu -13 299 1 391 138 0 0 chr11 75045528 75045593 -73737879 + L1MB8 LINE L1 6111 6175 -3 469 281 163 7 chr11 75045664 75045817 -73737655 - MER5A DNA MER1_type 0 189 13 225 261 14 43 chr11 75046769 75046838 -73736634 - MIR SINE MIR -87 175 109 236 336 30 37 chr11 75047126 75047260 -73736212 - L2 LINE L2 -8 3305 3173 824 208 69 0 chr11 75047264 75047423 -73736049 + MER96 DNA MER1_type? 1 170 -5 699 217 153 0 chr11 75047490 75047647 -73735825 - MER5A DNA MER1_type 0 189 9 247 375 42 6 chr11 75047785 75047953 -73735519 - L2 LINE L2 -292 2980 2807 331 229 14 0 chr11 75048615 75048685 -73734787 + MER20 DNA MER1_type 143 213 -6 239 293 202 85 chr11 75048851 75049203 -73734269 + L2 LINE L2 2831 3223 -49 891 209 60 20 chr11 75049659 75049860 -73733612 + MIR SINE MIR 44 252 -10 884 331 86 59 chr11 75050054 75050730 -73732742 + L3 LINE CR1 757 1450 -127 710 155 142 47 chr11 75050756 75050904 -73732568 + FRAM SINE Alu 1 153 -23 440 298 206 0 chr11 75050949 75051090 -73732382 + L3 LINE CR1 1407 1576 -1 311 259 138 19 chr11 75051206 75051372 -73732100 - MIR SINE MIR -63 145 2 324 279 81 0 chr11 75051471 75051582 -73731890 - L1MC4 LINE L1 -1 8041 7922 22 0 0 0 chr11 75051740 75051762 -73731710 + AT_rich Low_complexity Low_complexity 1 22 0 2279 109 0 0 chr11 75051824 75052128 -73731344 - AluSx SINE Alu -8 304 1 1965 156 3 7 chr11 75053474 75053775 -73729697 + AluJb SINE Alu 4 303 -9 930 208 27 27 chr11 75053775 75053985 -73729487 + L1M4c LINE L1 2286 2498 -3886 449 200 0 0 chr11 75053985 75054060 -73729412 + AluSp SINE Alu 136 210 -103 24 0 0 0 chr11 75054119 75054143 -73729329 + AT_rich Low_complexity Low_complexity 1 24 0 2415 57 14 3 chr11 75054159 75054455 -73729017 - AluY SINE Alu -11 300 2 5088 191 33 31 chr11 75054899 75055533 -73727939 - L1M3 LINE L1 -533 5647 5016 2187 97 7 0 chr11 75055533 75055821 -73727651 + AluSg SINE Alu 1 290 -20 5088 191 33 31 chr11 75055821 75056666 -73726806 - L1M3 LINE L1 -1164 5016 4168 1640 168 0 36 chr11 75056666 75056969 -73726503 - AluJb SINE Alu -18 294 3 211 267 78 69 chr11 75056980 75057096 -73726376 + L3 LINE CR1 1452 1568 -9 662 286 90 63 chr11 75057356 75057447 -73726025 - L1MC4a LINE L1 -1913 5895 5808 1913 138 31 0 chr11 75057447 75057738 -73725734 - AluJb SINE Alu -12 300 1 662 286 90 63 chr11 75057738 75058199 -73725273 - L1MC4a LINE L1 -2000 5808 5328 2309 93 3 0 chr11 75058221 75058511 -73724961 - AluSp SINE Alu -22 291 1 529 223 62 62 chr11 75058517 75058679 -73724793 - HAL1 LINE L1 0 2507 2343 1732 156 10 36 chr11 75058679 75058980 -73724492 - AluJo SINE Alu -19 293 1 529 223 62 62 chr11 75058980 75059010 -73724462 - HAL1 LINE L1 -163 2344 2315 25 0 0 0 chr11 75059026 75059051 -73724421 + AT_rich Low_complexity Low_complexity 1 25 0 2793 23 0 0 chr11 75059056 75059363 -73724109 - AluYb8 SINE Alu -11 307 1 27 0 0 0 chr11 75059412 75059439 -73724033 + AT_rich Low_complexity Low_complexity 1 27 0 286 224 35 0 chr11 75059441 75059526 -73723946 - HAL1 LINE L1 -169 2338 2251 1478 104 0 0 chr11 75059533 75059725 -73723747 - AluSg/x SINE Alu -4 306 115 974 94 31 0 chr11 75059784 75059911 -73723561 - AluSc SINE Alu -177 132 2 261 121 43 172 chr11 75059975 75060091 -73723381 - HAL1 LINE L1 -333 2174 2074 1991 124 10 3 chr11 75060260 75060551 -73722921 - AluSx SINE Alu -19 293 1 482 264 41 108 chr11 75060949 75061065 -73722407 + L1ME3A LINE L1 5561 5683 -487 2395 96 0 3 chr11 75061065 75061378 -73722094 - AluSx SINE Alu 0 312 1 482 264 41 108 chr11 75061378 75061669 -73721803 + L1ME3A LINE L1 5683 5949 -221 1598 177 10 23 chr11 75061758 75062058 -73721414 - AluJo SINE Alu -16 296 1 1384 162 112 23 chr11 75062242 75062545 -73720927 + L1MB2 LINE L1 5813 6142 -29 1671 188 7 10 chr11 75062575 75062867 -73720605 + AluJo SINE Alu 6 296 -16 847 280 122 29 chr11 75063036 75063293 -73720179 + L1MD2 LINE L1 4780 5012 -1347 1806 176 3 0 chr11 75063293 75063582 -73719890 + AluJb SINE Alu 1 290 -22 847 280 122 29 chr11 75063582 75064308 -73719164 + L1MD2 LINE L1 5012 5884 -475 1160 189 38 5 chr11 75064733 75064945 -73718527 - MER20 DNA MER1_type 0 219 1 2249 105 3 0 chr11 75065096 75065390 -73718082 + AluSp SINE Alu 1 295 -18 1888 168 7 0 chr11 75065402 75065694 -73717778 + AluJb SINE Alu 1 294 -18 2345 107 0 0 chr11 75065696 75066006 -73717466 + AluSq SINE Alu 1 310 -3 21 57 0 0 chr11 75066047 75066082 -73717390 + AT_rich Low_complexity Low_complexity 1 35 0 2325 74 0 0 chr11 75066121 75066431 -73717041 - AluY SINE Alu 0 310 1 327 347 36 31 chr11 75066617 75066810 -73716662 - MIR SINE MIR -49 213 20 221 289 22 33 chr11 75067183 75067273 -73716199 - L3b LINE CR1 -103 1480 1392 435 295 98 70 chr11 75067584 75067899 -73715573 + L2 LINE L2 2946 3269 -3 386 344 59 18 chr11 75067911 75068132 -73715340 + L3 LINE CR1 1205 1434 -143 524 312 60 69 chr11 75068226 75068543 -73714929 - L3 LINE CR1 -268 1309 996 949 88 0 51 chr11 75068675 75068812 -73714660 + AluSg/x SINE Alu 162 291 -19 652 250 6 12 chr11 75068991 75069151 -73714321 + MIR SINE MIR 2 160 -102 889 198 0 12 chr11 75069154 75069316 -73714156 - AluJo SINE Alu -152 160 1 361 316 73 0 chr11 75069344 75069480 -73713992 + L2 LINE L2 3167 3312 -1 1864 143 58 12 chr11 75069773 75070102 -73713370 - MER2 DNA MER2_type 0 344 1 2145 121 0 7 chr11 75070214 75070512 -73712960 + AluSq SINE Alu 1 296 -17 278 301 40 75 chr11 75070537 75070736 -73712736 - MIR SINE MIR -69 193 2 466 304 25 12 chr11 75071303 75071464 -73712008 - MIR SINE MIR -80 182 20 731 150 122 0 chr11 75071564 75071711 -73711761 + L1ME3A LINE L1 5993 6157 -13 1519 179 9 61 chr11 75071727 75071863 -73711609 + AluJo SINE Alu 1 142 -170 1995 157 16 0 chr11 75071863 75071989 -73711483 + AluSx SINE Alu 1 123 -189 330 26 0 0 chr11 75071989 75072028 -73711444 + (CA)n Simple_repeat Simple_repeat 2 40 0 1995 157 16 0 chr11 75072028 75072206 -73711266 + AluSx SINE Alu 123 310 -2 1519 179 9 61 chr11 75072206 75072355 -73711117 + AluJo SINE Alu 142 269 -43 2142 122 7 0 chr11 75072355 75072649 -73710823 - AluSq SINE Alu -17 296 1 1519 179 9 61 chr11 75072649 75072691 -73710781 + AluJo SINE Alu 269 312 0 350 210 62 12 chr11 75073023 75073104 -73710368 - HsTC2 DNA Tc2 -67 1831 29 2284 115 0 3 chr11 75073492 75073805 -73709667 + AluSx SINE Alu 1 312 0 2145 110 3 3 chr11 75073818 75074110 -73709362 + AluSq SINE Alu 1 292 -21 431 288 68 9 chr11 75074379 75074598 -73708874 - L1MC4a LINE L1 -1900 5908 5677 632 299 79 50 chr11 75075215 75075316 -73708156 - L1MC4a LINE L1 -1897 5911 5814 1847 157 29 0 chr11 75075316 75075597 -73707875 - AluJb SINE Alu -22 290 2 632 299 79 50 chr11 75075597 75076037 -73707435 - L1MC4a LINE L1 -1994 5814 5354 915 211 78 20 chr11 75076183 75076387 -73707085 + MER58A DNA MER1_type 1 216 -8 1557 201 3 24 chr11 75076390 75076684 -73706788 + AluJb SINE Alu 7 294 -18 1327 142 5 31 chr11 75076715 75076818 -73706654 + AluJo SINE Alu 3 107 -205 2174 87 10 20 chr11 75076818 75077117 -73706355 + AluSc SINE Alu 1 296 -13 1327 142 5 31 chr11 75077117 75077285 -73706187 + AluJo SINE Alu 107 299 -13 243 88 0 0 chr11 75077506 75077540 -73705932 + (T)n Simple_repeat Simple_repeat 1 34 0 396 0 0 0 chr11 75077667 75077711 -73705761 + (TG)n Simple_repeat Simple_repeat 2 45 0 1020 201 201 74 chr11 75078463 75078907 -73704565 - MLT1H LTR MaLR -6 543 44 223 250 36 0 chr11 75079332 75079388 -73704084 - L2 LINE L2 0 3272 3215 26 30 0 0 chr11 75080145 75080178 -73703294 + GC_rich Low_complexity Low_complexity 1 33 0 1805 114 15 7 chr11 75080833 75081106 -73702366 + AluJb SINE Alu 1 275 -37 326 23 0 23 chr11 75081113 75081157 -73702315 + (CAAAA)n Simple_repeat Simple_repeat 1 43 0 573 204 51 12 chr11 75081537 75081729 -73701743 - MIR3 SINE MIR -51 211 11 504 310 76 49 chr11 75082019 75082429 -73701043 + L2 LINE L2 2116 2536 -778 2486 77 3 0 chr11 75082557 75082857 -73700615 - AluSp SINE Alu -12 301 1 270 300 50 79 chr11 75082880 75083157 -73700315 + L2 LINE L2 2811 3079 -193 316 362 164 22 chr11 75083218 75083486 -73699986 - L2 LINE L2 -20 3252 2947 1160 133 12 0 chr11 75083690 75083856 -73699616 - FRAM SINE Alu -11 165 1 1973 164 0 0 chr11 75084247 75084545 -73698927 + AluJb SINE Alu 1 298 -14 2360 79 0 0 chr11 75085377 75085669 -73697803 - AluSg1 SINE Alu -17 292 1 595 100 0 0 chr11 75086515 75086595 -73696877 - MADE1 DNA Mariner 0 80 1 519 148 8 107 chr11 75086756 75086878 -73696594 + FLAM_A SINE Alu 1 110 -32 611 260 109 56 chr11 75087068 75087092 -73696380 - L1MEd LINE L1 -867 1623 1602 2479 82 0 0 chr11 75087092 75087396 -73696076 - AluY SINE Alu -7 304 1 611 260 109 56 chr11 75087396 75088010 -73695462 - L1MEd LINE L1 -888 1602 855 416 187 37 134 chr11 75088045 75088132 -73695340 - L1ME1 LINE L1 -63 6103 6039 2156 116 7 0 chr11 75088132 75088425 -73695047 - AluSq SINE Alu -18 295 1 416 187 37 134 chr11 75088425 75088524 -73694948 - L1ME1 LINE L1 -127 6039 5932 1858 149 0 14 chr11 75088524 75088837 -73694635 - AluJb SINE Alu 0 309 1 430 283 251 12 chr11 75088894 75089141 -73694331 - L1MEd LINE L1 -5704 415 110 903 248 151 16 chr11 75089147 75089758 -73693714 - LTR50 LTR ERVL 0 681 1 388 195 13 0 chr11 75089759 75089836 -73693636 - L1MEd LINE L1 -6015 104 27 2247 107 0 0 chr11 75089856 75090181 -73693291 - AluSx SINE Alu 0 312 1 1758 164 46 0 chr11 75090183 75090463 -73693009 - AluJo SINE Alu -19 293 1 222 226 0 48 chr11 75090493 75090555 -73692917 - MIR SINE MIR -3 259 201 1109 141 0 0 chr11 75090563 75090719 -73692753 - AluSg/x SINE Alu -13 297 142 2386 43 40 23 chr11 75090825 75091129 -73692343 - AluY SINE Alu -2 309 1 1050 225 177 40 chr11 75092021 75092545 -73690927 - L1MC4 LINE L1 -1 8041 7327 203 276 102 10 chr11 75092938 75093036 -73690436 + MIR SINE MIR 95 201 -61 273 254 9 41 chr11 75093063 75093119 -73690353 + Charlie8 DNA MER1_type 232 288 -2129 1282 159 156 4 chr11 75093119 75093376 -73690096 - AluJb SINE Alu -6 296 1 273 254 9 41 chr11 75093376 75093436 -73690036 + Charlie8 DNA MER1_type 288 2417 0 455 318 17 12 chr11 75094522 75094695 -73688777 + MIR3 SINE MIR 33 206 -2 798 261 145 31 chr11 75094855 75095207 -73688265 - MARNA DNA Mariner -176 410 19 2266 109 0 3 chr11 75095261 75095564 -73687908 - AluSx SINE Alu -10 302 1 289 346 86 10 chr11 75097244 75097566 -73685906 - L2 LINE L2 -221 3051 2704 2430 64 27 0 chr11 75097582 75097878 -73685594 - AluSp SINE Alu -9 304 1 644 236 119 39 chr11 75098220 75098530 -73684942 - L1ME4a LINE L1 -2 6119 5785 313 290 11 0 chr11 75098687 75098780 -73684692 - L1ME4a LINE L1 -420 5701 5608 273 244 143 34 chr11 75098813 75098932 -73684540 - L1ME4a LINE L1 -43 6078 5947 478 232 112 77 chr11 75098989 75099048 -73684424 - L1ME4a LINE L1 -169 5952 5897 2179 135 0 0 chr11 75099048 75099352 -73684120 - AluJb SINE Alu -8 304 1 478 232 112 77 chr11 75099352 75099418 -73684054 - L1ME4a LINE L1 -224 5897 5835 1831 139 7 55 chr11 75099418 75099727 -73683745 - AluJo SINE Alu -18 294 1 478 232 112 77 chr11 75099727 75099940 -73683532 - L1ME4a LINE L1 -286 5835 5601 195 42 0 0 chr11 75100129 75100153 -73683319 + (A)n Simple_repeat Simple_repeat 1 24 0 523 54 413 11 chr11 75100194 75100286 -73683186 - AluJb SINE Alu -179 133 5 1173 143 74 37 chr11 75100442 75100658 -73682814 - AluJo SINE Alu -83 229 6 249 178 0 0 chr11 75101210 75101255 -73682217 + L2 LINE L2 3263 3307 -6 627 14 0 0 chr11 75102996 75103068 -73680404 + (TG)n Simple_repeat Simple_repeat 2 73 0 2569 59 0 3 chr11 75105980 75106283 -73677189 - AluY SINE Alu -8 303 2 183 302 0 0 chr11 75106397 75106460 -73677012 + L2 LINE L2 3137 3199 -73 426 262 126 26 chr11 75107011 75107202 -73676270 - MIR SINE MIR -13 249 40 2273 82 3 16 chr11 75107798 75108101 -73675371 + AluSx SINE Alu 1 299 -13 2014 146 0 0 chr11 75108351 75108638 -73674834 + AluJb SINE Alu 1 287 -25 23 0 0 0 chr11 75108638 75108661 -73674811 + AT_rich Low_complexity Low_complexity 1 23 0 2392 69 3 7 chr11 75108790 75109081 -73674391 - AluSc SINE Alu -19 290 1 1140 196 25 43 chr11 75109372 75109607 -73673865 - AluJo SINE Alu -17 295 65 895 152 0 0 chr11 75109637 75109769 -73673703 - AluJb SINE Alu -180 132 1 2113 144 3 3 chr11 75109836 75110148 -73673324 + AluJb SINE Alu 1 312 0 198 71 0 0 chr11 75110251 75110279 -73673193 + (A)n Simple_repeat Simple_repeat 1 28 0 926 210 12 0 chr11 75110312 75110474 -73672998 + FAM SINE Alu 1 164 -11 239 290 65 0 chr11 75110650 75110757 -73672715 + L1ME4a LINE L1 5959 6072 -49 24 0 0 0 chr11 75111354 75111378 -73672094 + AT_rich Low_complexity Low_complexity 1 24 0 1487 145 6 101 chr11 75111471 75111788 -73671684 - AluJo SINE Alu -25 287 1 1698 136 0 63 chr11 75111797 75112123 -73671349 - AluJo SINE Alu 0 307 1 1425 189 22 42 chr11 75112316 75112628 -73670844 - AluJo SINE Alu -6 306 1 225 322 32 40 chr11 75112639 75112829 -73670643 - MIR SINE MIR -46 216 30 2191 116 3 25 chr11 75113264 75113583 -73669889 - AluJb SINE Alu 0 312 1 243 0 0 0 chr11 75115157 75115184 -73668288 + (T)n Simple_repeat Simple_repeat 1 27 0 1020 86 0 60 chr11 75115324 75115475 -73667997 - FRAM SINE Alu 0 176 35 741 119 106 38 chr11 75115691 75115957 -73667515 + MER33 DNA MER1_type 1 323 -1 347 271 107 16 chr11 75116697 75116819 -73666653 + MIR3 SINE MIR 4 136 -72 263 100 25 0 chr11 75117391 75117431 -73666041 - MER4E LTR ERV1 -72 707 667 201 290 32 16 chr11 75118711 75118773 -73664699 - L3 LINE CR1 -1 1576 1514 203 296 78 26 chr11 75118919 75119034 -73664438 - L3 LINE CR1 -299 1278 1158 850 110 0 0 chr11 75119796 75119905 -73663567 - AluJb SINE Alu -187 125 17 570 303 266 28 chr11 75119911 75121050 -73662422 + L2 LINE L2 1820 3228 -44 187 263 0 0 chr11 75121054 75121092 -73662380 + L2 LINE L2 3188 3225 -47 695 251 40 40 chr11 75121838 75122037 -73661435 + MIR SINE MIR 8 206 -56 2515 62 0 10 chr11 75122040 75122344 -73661128 + AluSc SINE Alu 3 303 -6 186 268 0 0 chr11 75122664 75122705 -73660767 - MIR3 SINE MIR -5 203 163 1338 143 50 99 chr11 75123701 75123876 -73659596 - AluSx SINE Alu -6 306 153 180 0 0 0 chr11 75123876 75123896 -73659576 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1338 143 50 99 chr11 75123896 75124042 -73659430 - AluSx SINE Alu -159 153 1 2155 71 0 0 chr11 75124044 75124296 -73659176 - AluY SINE Alu -19 292 41 449 78 16 16 chr11 75124296 75124360 -73659112 - AluSq/x SINE Alu -172 141 78 1346 171 5 0 chr11 75124360 75124571 -73658901 - AluSx SINE Alu -100 212 1 255 332 17 20 chr11 75125967 75126179 -73657293 + GA-rich Low_complexity Low_complexity 1 211 0 180 323 21 54 chr11 75127943 75128015 -73655457 - L3 LINE CR1 -470 1107 1037 1602 197 14 7 chr11 75128015 75128309 -73655163 + AluJo SINE Alu 1 296 -16 180 323 21 54 chr11 75128309 75128329 -73655143 - L3 LINE CR1 -540 1037 1018 302 335 44 33 chr11 75128463 75128645 -73654827 - L3 LINE CR1 -788 789 606 212 224 35 17 chr11 75129120 75129178 -73654294 + L3 LINE CR1 1427 1485 -92 203 256 160 0 chr11 75129452 75129556 -73653916 + MIR SINE MIR 21 149 -68 1985 133 3 17 chr11 75131289 75131582 -73651890 - AluSx SINE Alu -23 289 1 24 0 0 0 chr11 75131582 75131606 -73651866 + AT_rich Low_complexity Low_complexity 1 24 0 2167 97 11 4 chr11 75131615 75131893 -73651579 + AluSx SINE Alu 1 280 -32 909 120 0 0 chr11 75131915 75132032 -73651440 - FLAM_C SINE Alu -26 117 1 548 250 6 51 chr11 75132037 75132059 -73651413 - LTR51 LTR ERV1 -274 397 376 2494 52 0 26 chr11 75132059 75132366 -73651106 + AluY SINE Alu 1 299 -12 548 250 6 51 chr11 75132366 75132519 -73650953 - LTR51 LTR ERV1 -295 376 230 1832 158 20 10 chr11 75132529 75132826 -73650646 + AluJb SINE Alu 1 300 -12 1430 85 0 0 chr11 75132939 75133116 -73650356 - AluSc SINE Alu -1 308 132 2201 110 3 3 chr11 75133116 75133415 -73650057 - AluSg SINE Alu -11 299 1 6168 77 16 13 chr11 75133416 75134290 -73649182 - MER61-int LTR ERV1 -1012 4205 3329 2297 96 3 7 chr11 75134290 75134592 -73648880 + AluSx SINE Alu 1 301 -11 1959 148 3 13 chr11 75134724 75135028 -73648444 - AluJb SINE Alu -11 301 1 2016 234 18 25 chr11 75135188 75136168 -73647304 - L1MC4 LINE L1 -461 5717 5082 1838 162 0 23 chr11 75136178 75136486 -73646986 + AluJb SINE Alu 11 311 -1 392 200 110 10 chr11 75136730 75136830 -73646642 + MLT1I LTR MaLR 39 148 -261 236 140 180 0 chr11 75136882 75136932 -73646540 + MLT1J1 LTR MaLR 265 323 -123 616 171 124 0 chr11 75137031 75137136 -73646336 + FLAM_C SINE Alu 2 119 -24 1708 203 0 0 chr11 75137174 75137469 -73646003 + AluJo SINE Alu 1 295 -17 202 219 61 61 chr11 75138918 75139000 -73644472 - L2 LINE L2 0 3313 3232 3696 116 32 40 chr11 75139044 75139102 -73644370 - MER4E LTR ERV1 -135 644 587 2245 108 0 3 chr11 75139102 75139398 -73644074 + AluSg SINE Alu 1 295 -15 3696 116 32 40 chr11 75139398 75139987 -73643485 - MER4E LTR ERV1 -192 587 2 212 254 55 0 chr11 75140035 75140090 -73643382 + L2 LINE L2 3255 3312 -1 2007 129 56 3 chr11 75140120 75140477 -73642995 + LTR23 LTR ERV1 1 376 -61 31 0 0 60 chr11 75140526 75140545 -73642927 + AT_rich Low_complexity Low_complexity 1 20 -27 767 202 8 0 chr11 75140545 75140674 -73642798 + FLAM_C SINE Alu 3 132 -1 31 0 0 60 chr11 75140674 75140704 -73642768 + AT_rich Low_complexity Low_complexity 20 47 0 928 116 23 0 chr11 75141052 75141181 -73642291 + FLAM_C SINE Alu 1 132 -1 4203 119 19 13 chr11 75141521 75142152 -73641320 + MER41B LTR ERV1 1 635 0 3728 131 18 3 chr11 75142167 75142739 -73640733 + MER41B-int LTR ERV1 30 609 -5337 3526 116 71 20 chr11 75142732 75142858 -73640614 + MER41B-int LTR ERV1 1143 1261 -4685 * 5854 63 57 3 chr11 75142858 75143598 -73639874 - LTR17 LTR ERV1 0 780 1 3526 116 71 20 chr11 75143598 75144073 -73639399 + MER41B-int LTR ERV1 1261 1775 -4171 * 4479 135 20 30 chr11 75144058 75144795 -73638677 + MER41B-int LTR ERV1 1951 2741 -3205 2355 95 0 0 chr11 75144795 75145099 -73638373 + AluY SINE Alu 1 304 -7 4479 135 20 30 chr11 75145099 75145303 -73638169 + MER41B-int LTR ERV1 2741 2946 -3000 * 5953 123 23 58 chr11 75145299 75145977 -73637495 + MER41B-int LTR ERV1 2864 3485 -1530 2244 121 3 0 chr11 75145977 75146282 -73637190 - AluSx SINE Alu -2 310 5 5953 123 23 58 chr11 75146282 75146798 -73636674 + MER41B-int LTR ERV1 3485 4017 -998 2293 94 0 23 chr11 75146801 75147100 -73636372 + AluSq SINE Alu 1 292 -21 433 154 0 66 chr11 75147101 75147192 -73636280 - L1MB3 LINE L1 -78 6105 6021 200 239 22 0 chr11 75148088 75148134 -73635338 + L2 LINE L2 2925 2971 -342 519 277 0 31 chr11 75148163 75148293 -73635179 + L2 LINE L2 3188 3313 0 1722 180 10 3 chr11 75148411 75148523 -73634949 + AluJo SINE Alu 1 111 -201 7263 49 0 4 chr11 75148523 75149539 -73633933 - L1PA5 LINE L1 0 6154 5134 1722 180 10 3 chr11 75149539 75149732 -73633740 + AluJo SINE Alu 111 308 -4 2309 117 3 0 chr11 75150114 75150423 -73633049 + AluSx SINE Alu 1 310 -2 675 203 0 8 chr11 75151540 75151673 -73631799 - FLAM_C SINE Alu -1 132 1 216 0 0 0 chr11 75151676 75151700 -73631772 + (T)n Simple_repeat Simple_repeat 1 24 0 27 0 0 0 chr11 75151719 75151746 -73631726 + GC_rich Low_complexity Low_complexity 1 27 0 2222 109 0 0 chr11 75151858 75152178 -73631294 + AluSx SINE Alu 1 320 0 1254 199 77 0 chr11 75152178 75152465 -73631007 + MER49 LTR ERV1 615 923 0 252 176 11 121 chr11 75153206 75153297 -73630175 + MIR3 SINE MIR 104 184 -24 282 271 31 62 chr11 75153731 75153860 -73629612 - MIR3 SINE MIR -79 129 5 2320 108 3 0 chr11 75155215 75155510 -73627962 - AluSx SINE Alu -16 296 1 297 214 10 39 chr11 75155512 75155615 -73627857 + MER46C DNA MER2_type 61 160 -178 784 165 16 0 chr11 75156612 75156739 -73626733 - FLAM_C SINE Alu 0 133 5 1729 163 36 16 chr11 75156901 75157207 -73626265 + AluJb SINE Alu 1 312 0 227 137 0 68 chr11 75157207 75157280 -73626192 + (GGGA)n Simple_repeat Simple_repeat 1 68 0 2112 97 49 3 chr11 75157295 75157454 -73626018 - AluSq SINE Alu -12 301 122 194 0 0 37 chr11 75157454 75157481 -73625991 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2112 97 49 3 chr11 75157481 75157609 -73625863 - AluSq SINE Alu -191 122 1 1983 130 7 18 chr11 75157621 75157936 -73625536 - AluSx SINE Alu 0 312 1 956 155 121 9 chr11 75157964 75158196 -73625276 - LTR23 LTR ERV1 -38 399 142 1385 113 0 22 chr11 75158198 75158246 -73625226 - AluSq SINE Alu -132 181 133 2530 73 0 0 chr11 75158246 75158548 -73624924 - AluY SINE Alu -9 302 1 1385 113 0 22 chr11 75158548 75158684 -73624788 - AluSq SINE Alu -180 133 1 248 264 46 46 chr11 75158815 75158902 -73624570 + L2 LINE L2 3227 3313 0 1373 213 13 47 chr11 75160406 75160564 -73622908 - AluJo SINE Alu -17 295 150 2455 84 3 0 chr11 75160564 75160862 -73622610 - AluSp SINE Alu -14 299 1 1373 213 13 47 chr11 75160862 75161004 -73622468 - AluJo SINE Alu -162 150 5 1693 134 13 0 chr11 75161005 75161243 -73622229 - AluSx SINE Alu -71 241 1 181 222 111 16 chr11 75161471 75161534 -73621938 - MIR SINE MIR -100 162 94 2371 108 0 0 chr11 75161535 75161842 -73621630 + AluSx SINE Alu 1 307 -5 1097 128 0 0 chr11 75161960 75162109 -73621363 - AluSg/x SINE Alu 0 312 164 2751 138 26 32 chr11 75162124 75162277 -73621195 - MER41-int LTR ERV1 -3294 2652 2500 2253 121 3 0 chr11 75162277 75162582 -73620890 + AluSx SINE Alu 1 306 -6 2751 138 26 32 chr11 75162582 75163004 -73620468 - MER41-int LTR ERV1 -3446 2500 2017 1052 107 7 7 chr11 75163016 75163156 -73620316 - AluSq/x SINE Alu -173 140 1 3272 93 45 33 chr11 75163156 75163471 -73620001 + MER41-int LTR ERV1 4821 5147 -799 2060 106 11 7 chr11 75163471 75163778 -73619694 - AluSg SINE Alu 0 308 1 3272 93 45 33 chr11 75163778 75163976 -73619496 + MER41-int LTR ERV1 5147 5341 -605 2449 46 0 3 chr11 75163976 75164286 -73619186 + AluY SINE Alu 1 309 0 497 139 7 6 chr11 75164327 75164466 -73619006 - MER30 DNA MER1_type -1 229 2 299 205 36 24 chr11 75164485 75164568 -73618904 - MER46C DNA MER2_type -2 336 253 1238 208 76 0 chr11 75164663 75164951 -73618521 - MER49 LTR ERV1 0 923 614 27 49 0 0 chr11 75164952 75164993 -73618479 + AT_rich Low_complexity Low_complexity 1 41 0 829 151 0 8 chr11 75164993 75165112 -73618360 - FLAM_C SINE Alu -25 118 1 1290 223 17 81 chr11 75165112 75165557 -73617915 - MER72 LTR ERV1 -269 402 1 796 218 70 0 chr11 75165557 75165786 -73617686 - MER72-int LTR ERV1 -1 6956 6533 2118 129 20 0 chr11 75165889 75166191 -73617281 - AluSx SINE Alu -4 308 1 1669 121 67 3 chr11 75166269 75166551 -73616921 - AluSx SINE Alu -12 300 1 469 259 6 64 chr11 75166600 75166673 -73616799 - MER72-int LTR ERV1 -380 6296 6220 1980 164 13 0 chr11 75166673 75166972 -73616500 - AluJb SINE Alu -9 303 1 469 259 6 64 chr11 75166972 75167110 -73616362 - MER72-int LTR ERV1 -456 6220 4321 1253 179 53 20 chr11 75167302 75167548 -73615924 + AluJb SINE Alu 52 305 -7 1824 154 54 21 chr11 75167718 75168050 -73615422 - MER61A LTR ERV1 0 343 1 6305 101 53 26 chr11 75168050 75168871 -73614601 - MER61A-int LTR ERV1 0 5217 4420 2164 130 0 3 chr11 75168871 75169172 -73614300 + AluSg SINE Alu 1 300 -10 6305 101 53 26 chr11 75169172 75169251 -73614221 - MER61A-int LTR ERV1 -797 4420 4345 8467 57 1 0 chr11 75169251 75170219 -73613253 + LTR5 LTR ERVK 1 969 0 6305 101 53 26 chr11 75170219 75170317 -73613155 - MER61A-int LTR ERV1 -872 4345 4191 216 0 0 0 chr11 75170317 75170341 -73613131 + (T)n Simple_repeat Simple_repeat 1 24 0 440 194 37 45 chr11 75170451 75170563 -73612909 - MER72 LTR ERV1 -589 133 21 2404 106 0 0 chr11 75170563 75170874 -73612598 - AluSx SINE Alu 0 312 2 440 194 37 45 chr11 75170874 75170895 -73612577 - MER72 LTR ERV1 -701 21 1 863 233 127 5 chr11 75170895 75171238 -73612234 - MER72-int LTR ERV1 -1 7078 6369 2338 86 10 19 chr11 75171381 75171694 -73611778 - AluSx SINE Alu -2 310 1 878 169 18 42 chr11 75171714 75171880 -73611592 - AluSg/x SINE Alu -14 296 135 2060 161 0 0 chr11 75171880 75172191 -73611281 - AluJb SINE Alu -1 311 1 1284 169 0 46 chr11 75172522 75172759 -73610713 + AluJb SINE Alu 54 279 -33 324 0 0 0 chr11 75172759 75172795 -73610677 + (CA)n Simple_repeat Simple_repeat 1 36 0 189 107 0 0 chr11 75173452 75173480 -73609992 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 2173 128 16 0 chr11 75173483 75173788 -73609684 - AluSx SINE Alu -2 310 1 1309 251 80 69 chr11 75173840 75174007 -73609465 - MER72 LTR ERV1 -154 568 404 2439 87 0 0 chr11 75174007 75174305 -73609167 + AluSx SINE Alu 3 300 -12 1309 251 80 69 chr11 75174305 75174699 -73608773 - MER72 LTR ERV1 -318 404 1 375 263 15 51 chr11 75175907 75176044 -73607428 - L2 LINE L2 -19 3294 3163 1246 194 107 9 chr11 75176464 75176783 -73606689 + L1MC4 LINE L1 7233 7582 -460 469 235 8 25 chr11 75176897 75177016 -73606456 + L1MB3 LINE L1 5410 5526 -2282 1998 138 3 13 chr11 75177024 75177329 -73606143 - AluJb SINE Alu -10 302 1 1169 224 85 0 chr11 75177462 75177577 -73605895 - L1MB7 LINE L1 -131 6053 5939 266 344 79 9 chr11 75177577 75177756 -73605716 - L1PB2 LINE L1 -228 5923 5723 2111 122 3 3 chr11 75177756 75178042 -73605430 + AluSp SINE Alu 2 287 -26 266 344 79 9 chr11 75178042 75178089 -73605383 - L1PB2 LINE L1 -428 5723 5681 245 333 0 12 chr11 75178100 75178265 -73605207 + (TATG)n Simple_repeat Simple_repeat 2 164 0 * 362 313 0 11 chr11 75178233 75178412 -73605060 + (TATATG)n Simple_repeat Simple_repeat 3 179 0 249 362 0 0 chr11 75178368 75178545 -73604927 + (TATG)n Simple_repeat Simple_repeat 4 180 0 * 533 335 0 13 chr11 75178549 75178707 -73604765 + (TATATG)n Simple_repeat Simple_repeat 6 161 0 1890 201 37 33 chr11 75178707 75179087 -73604385 - L1MB7 LINE L1 -430 5748 5356 2100 147 3 0 chr11 75179087 75179386 -73604086 - AluSx SINE Alu -12 300 1 1890 201 37 33 chr11 75179386 75179641 -73603831 - L1MB7 LINE L1 -822 5356 5103 1925 141 36 13 chr11 75179655 75179939 -73603533 + AluSx SINE Alu 1 294 -18 423 0 0 0 chr11 75179939 75179986 -73603486 + (CA)n Simple_repeat Simple_repeat 2 48 0 1925 141 36 13 chr11 75179986 75180006 -73603466 + AluSx SINE Alu 294 312 0 1984 152 7 3 chr11 75180008 75180305 -73603167 + AluSx SINE Alu 1 298 -14 2065 136 0 37 chr11 75180511 75180835 -73602637 - AluSx SINE Alu 0 312 1 466 249 92 127 chr11 75180982 75181284 -73602188 + MLT1I LTR MaLR 39 327 -82 1443 156 53 90 chr11 75181284 75181605 -73601867 + AluJo SINE Alu 1 309 -3 466 249 92 127 chr11 75181605 75181672 -73601800 + MLT1I LTR MaLR 327 395 -14 1162 46 8 0 chr11 75181997 75182128 -73601344 - AluSp SINE Alu -180 133 2 306 181 14 14 chr11 75182133 75182205 -73601267 + L1MB3 LINE L1 6094 6165 -18 278 298 124 0 chr11 75182532 75182693 -73600779 + L2 LINE L2 2870 3050 -222 546 276 118 7 chr11 75184219 75184491 -73598981 + L1MC4a LINE L1 5730 6031 -1777 2100 125 33 19 chr11 75184976 75185335 -73598137 - THE1B LTR MaLR 0 364 1 11361 81 8 11 chr11 75185335 75186547 -73596925 - THE1B-int LTR MaLR 0 1580 373 1796 172 18 0 chr11 75186547 75186864 -73596608 + AluSx SINE Alu 1 322 0 11361 81 8 11 chr11 75186864 75187236 -73596236 - THE1B-int LTR MaLR -1207 373 1 2188 124 30 25 chr11 75187236 75187598 -73595874 - THE1B LTR MaLR 0 364 1 1927 160 0 13 chr11 75187700 75188006 -73595466 + AluJo SINE Alu 11 312 0 2053 135 0 30 chr11 75188052 75188356 -73595116 + AluSx SINE Alu 1 295 -17 2610 72 11 6 chr11 75188358 75188720 -73594752 + MER61-int LTR ERV1 2728 3091 -2126 2355 96 3 3 chr11 75188720 75189021 -73594451 - AluSx SINE Alu -11 301 1 2075 79 10 10 chr11 75189021 75189318 -73594154 + MER61-int LTR ERV1 3327 3626 -1591 273 29 0 0 chr11 75189487 75189521 -73593951 + (T)n Simple_repeat Simple_repeat 1 34 0 223 324 67 19 chr11 75189697 75189802 -73593670 + L2 LINE L2 3158 3267 -5 434 259 86 0 chr11 75190419 75190581 -73592891 - L1MC5 LINE L1 -522 7439 7264 275 208 14 14 chr11 75190613 75190685 -73592787 + L1MC5 LINE L1 7162 7233 -728 28 29 0 0 chr11 75191297 75191332 -73592140 + AT_rich Low_complexity Low_complexity 1 35 0 193 297 93 17 chr11 75191696 75191814 -73591658 - L2 LINE L2 -161 3111 2985 850 153 0 0 chr11 75192544 75192668 -73590804 - AluSg/x SINE Alu -14 298 175 2146 99 22 0 chr11 75192782 75193078 -73590394 + AluSg SINE Alu 1 302 0 311 262 122 0 chr11 75194149 75194256 -73589216 + MIR SINE MIR 105 224 -38 23 0 0 0 chr11 75195368 75195391 -73588081 + AT_rich Low_complexity Low_complexity 1 23 0 256 293 90 15 chr11 75195756 75195889 -73587583 - L1ME4a LINE L1 -30 6091 5949 1837 159 13 32 chr11 75196058 75196367 -73587105 + AluJo SINE Alu 1 303 -9 2418 97 3 0 chr11 75197073 75197381 -73586091 - AluSx SINE Alu -3 309 1 352 290 214 10 chr11 75197627 75197917 -73585555 - L2 LINE L2 -979 2335 1987 192 330 47 19 chr11 75198779 75198885 -73584587 - MIR SINE MIR -67 141 33 446 297 79 40 chr11 75200506 75200708 -73582764 + MIR SINE MIR 53 262 0 270 248 89 40 chr11 75200716 75200817 -73582655 + MIR SINE MIR 60 165 -97 1257 124 0 11 chr11 75200821 75200998 -73582474 + AluSg/x SINE Alu 133 307 -5 846 157 130 32 chr11 75207396 75207581 -73575891 - MER3 DNA MER1_type -3 206 4 308 273 140 7 chr11 75208051 75208201 -73575271 + MIR SINE MIR 25 194 -68 1924 171 0 3 chr11 75208839 75209137 -73574335 - AluJb SINE Alu -13 299 3 436 193 168 8 chr11 75209137 75209256 -73574216 + L1MC4a LINE L1 5508 5645 -2163 629 209 0 0 chr11 75209325 75209435 -73574037 + FLAM_C SINE Alu 2 111 -32 360 0 0 0 chr11 75209441 75209481 -73573991 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 1702 162 53 3 chr11 75210959 75211243 -73572229 - AluJo SINE Alu -11 301 4 2420 76 3 0 chr11 75211375 75211665 -73571807 - AluSq SINE Alu -22 291 1 511 269 0 31 chr11 75211694 75211824 -73571648 - L2 LINE L2 0 3313 3188 216 255 0 0 chr11 75211853 75211900 -73571572 - L2 LINE L2 -342 2971 2925 1878 102 0 19 chr11 75212004 75212260 -73571212 + AluSp SINE Alu 49 299 -14 776 136 7 41 chr11 75213067 75213214 -73570258 + L1MB3 LINE L1 6021 6162 -21 183 270 32 16 chr11 75214014 75214077 -73569395 + MIR SINE MIR 59 122 -86 526 264 176 39 chr11 75214642 75214864 -73568608 + L1MC4a LINE L1 5730 5920 -1888 2209 116 10 3 chr11 75214864 75215158 -73568314 + AluSx SINE Alu 1 296 -16 526 264 176 39 chr11 75215158 75215298 -73568174 + L1MC4a LINE L1 5920 6142 -1666 1604 191 41 3 chr11 75215798 75216220 -73567252 + AluJb SINE Alu 1 312 0 488 206 0 0 chr11 75216691 75216783 -73566689 + MLT1H1 LTR MaLR 424 515 -40 2485 206 78 21 chr11 75216800 75217432 -73566040 - L1MC4a LINE L1 0 7808 7141 249 224 0 0 chr11 75217444 75217493 -73565979 + MLT1H1 LTR MaLR 538 586 -4 1418 166 115 11 chr11 75218465 75218743 -73564729 - AluSg1 SINE Alu -2 307 1 1987 136 4 0 chr11 75218853 75219153 -73564319 - AluSx SINE Alu 0 301 1 872 217 9 18 chr11 75219196 75219417 -73564055 - L1MD3 LINE L1 -10 7985 7767 918 199 0 0 chr11 75219480 75219646 -73563826 - FRAM SINE Alu 0 166 1 319 298 92 23 chr11 75219700 75219831 -73563641 - L1MC/D LINE L1 -2017 5791 5652 1216 158 87 7 chr11 75219839 75220094 -73563378 + L1M3 LINE L1 5543 5789 -394 317 295 16 8 chr11 75220124 75220246 -73563226 - L2 LINE L2 -630 2684 2562 1048 264 130 37 chr11 75220267 75221131 -73562341 - L2 LINE L2 -15 3298 2341 446 214 0 0 chr11 75221132 75221216 -73562256 + LTR28-int LTR ERV1 1663 1746 -5791 * 10964 142 21 30 chr11 75221206 75222633 -73560839 + LTR28-int LTR ERV1 2214 3652 -3344 2229 105 3 0 chr11 75222633 75222918 -73560554 - AluSc SINE Alu -23 286 1 10964 142 21 30 chr11 75222918 75224646 -73558826 + LTR28-int LTR ERV1 3652 6995 -1 4851 153 66 72 chr11 75224647 75225673 -73557799 + LTR28 LTR ERV1 1 1020 0 1821 186 120 5 chr11 75225948 75226373 -73557099 + MLT1D LTR MaLR 32 505 0 367 290 51 62 chr11 75226494 75226621 -73556851 - MIR SINE MIR -15 247 116 2321 117 139 121 chr11 75226621 75227210 -73556262 + MER4A LTR ERV1 1 600 0 367 290 51 62 chr11 75227210 75227286 -73556186 - MIR SINE MIR -146 116 41 375 205 51 0 chr11 75227343 75227421 -73556051 - L2 LINE L2 0 3272 3191 2334 130 42 24 chr11 75227500 75227954 -73555518 + L1MB3 LINE L1 5680 6141 -42 2068 86 3 36 chr11 75227956 75228257 -73555215 + AluSp SINE Alu 1 291 -22 2081 157 0 0 chr11 75228378 75228678 -73554794 - AluJb SINE Alu -10 302 3 228 146 42 21 chr11 75228683 75228731 -73554741 - L1MB3 LINE L1 -121 6062 6014 745 194 236 0 chr11 75228731 75228922 -73554550 + MER8 DNA MER2_type 1 236 -3 2286 57 46 0 chr11 75228934 75229215 -73554257 - AluY SINE Alu -17 294 1 883 161 22 0 chr11 75229282 75229457 -73554015 - L1MB3 LINE L1 -175 6014 5825 416 153 0 0 chr11 75229731 75229803 -73553669 - MLT1D LTR MaLR 0 505 434 443 145 0 0 chr11 75229812 75229881 -73553591 - FLAM_A SINE Alu -22 120 52 3080 106 161 5 chr11 75229905 75230306 -73553166 + MER51D LTR ERV1 5 521 -136 423 0 0 0 chr11 75230306 75230353 -73553119 + (CA)n Simple_repeat Simple_repeat 2 48 0 3080 106 161 5 chr11 75230353 75230516 -73552956 + MER51D LTR ERV1 521 657 0 350 164 0 0 chr11 75230518 75230573 -73552899 - FLAM_A SINE Alu -77 55 1 1772 182 81 39 chr11 75230573 75230647 -73552825 - MLT1D LTR MaLR -53 452 383 2304 84 37 0 chr11 75230647 75230944 -73552528 + AluSx SINE Alu 1 308 -4 1772 182 81 39 chr11 75230944 75231302 -73552170 - MLT1D LTR MaLR -122 383 2 190 338 30 23 chr11 75231799 75231932 -73551540 + L2 LINE L2 2916 3049 -223 226 286 0 26 chr11 75232070 75232147 -73551325 + L2 LINE L2 2906 2980 -292 341 219 83 21 chr11 75232312 75232408 -73551064 - L2 LINE L2 -13 3300 3199 295 277 0 12 chr11 75232541 75232628 -73550844 + MIR SINE MIR 63 147 -61 245 300 127 84 chr11 75233222 75233649 -73549823 + L2 LINE L2 2811 3255 -17 270 216 149 0 chr11 75233860 75233934 -73549538 - L2 LINE L2 -52 3220 3136 1967 235 146 25 chr11 75233964 75234671 -73548801 + L2 LINE L2 1975 2766 -548 1068 263 66 32 chr11 75234682 75235089 -73548383 + L2 LINE L2 2892 3312 -1 208 254 65 94 chr11 75235206 75235344 -73548128 - MIR SINE MIR -70 192 59 259 264 132 9 chr11 75235665 75235771 -73547701 + L2 LINE L2 3121 3239 -33 185 280 0 0 chr11 75236895 75236945 -73546527 + MIR SINE MIR 77 126 -82 203 267 0 0 chr11 75237033 75237078 -73546394 + (TTCA)n Simple_repeat Simple_repeat 4 48 0 765 203 11 28 chr11 75237377 75237554 -73545918 - MIR SINE MIR -54 208 35 252 239 0 0 chr11 75238730 75238801 -73544671 + (ATG)n Simple_repeat Simple_repeat 2 72 0 446 285 42 24 chr11 75239647 75239812 -73543660 - MIR3 SINE MIR -23 185 18 439 287 74 46 chr11 75240419 75240635 -73542837 - MIR SINE MIR -24 238 17 217 361 61 35 chr11 75241319 75241549 -73541923 + L2 LINE L2 2810 3045 -227 2001 159 0 3 chr11 75241667 75241968 -73541504 - AluJb SINE Alu -12 300 1 1643 195 7 3 chr11 75241983 75242286 -73541186 - AluJb SINE Alu -2 310 7 273 234 31 0 chr11 75242518 75242582 -73540890 + L2 LINE L2 3205 3270 -2 248 248 30 50 chr11 75242576 75242677 -73540795 - MIR3 SINE MIR -43 165 67 * 395 237 156 22 chr11 75243088 75243223 -73540249 - MIR SINE MIR -109 153 1 184 337 50 10 chr11 75244299 75244400 -73539072 - L2 LINE L2 -61 3211 3107 477 226 26 9 chr11 75244408 75244523 -73538949 + L2 LINE L2 3197 3313 0 508 134 72 0 chr11 75244781 75244878 -73538594 - U13 snRNA snRNA 0 104 1 589 219 148 14 chr11 75246544 75246778 -73536694 - MIR SINE MIR -2 260 1 277 268 122 43 chr11 75247608 75247772 -73535700 - MIR3 SINE MIR -20 188 12 408 232 133 20 chr11 75248062 75248266 -73535206 + MIR3 SINE MIR 4 228 -34 211 195 0 24 chr11 75250161 75250202 -73533270 + CT-rich Low_complexity Low_complexity 2 41 0 248 247 43 65 chr11 75254987 75255080 -73528392 - MIR3 SINE MIR -46 162 72 384 169 26 13 chr11 75256018 75256095 -73527377 - MER96 DNA MER1_type? -1 174 97 246 128 0 0 chr11 75257488 75257527 -73525945 + (CA)n Simple_repeat Simple_repeat 1 39 0 489 272 59 35 chr11 75259314 75259483 -73523989 + MIR SINE MIR 30 202 -60 357 258 92 60 chr11 75260439 75260581 -73522891 + L1ME LINE L1 5508 5661 -460 2530 60 0 0 chr11 75260581 75260879 -73522593 + AluY SINE Alu 1 298 -13 357 258 92 60 chr11 75260879 75260953 -73522519 + L1ME LINE L1 5661 5731 -390 * 2541 166 61 2 chr11 75260945 75261486 -73521986 + L1MB4 LINE L1 5573 6145 -35 221 371 63 6 chr11 75261958 75262117 -73521355 + L2 LINE L2 2378 2545 -769 2102 142 50 76 chr11 75262118 75262603 -73520869 - MER6 DNA MER2_type 0 865 394 1397 148 115 50 chr11 75262603 75262881 -73520591 - AluJo SINE Alu -16 296 1 451 341 95 38 chr11 75262916 75263391 -73520081 + L2 LINE L2 2809 3310 -3 2171 124 19 16 chr11 75263475 75263846 -73519626 - L1PA16 LINE L1 0 6166 5795 249 245 151 0 chr11 75264245 75264298 -73519174 + MER58 DNA MER1_type 9 69 -317 652 147 0 0 chr11 75264738 75264847 -73518625 + MER58 DNA MER1_type 2306 2414 -6 24 53 0 0 chr11 75264860 75264898 -73518574 + AT_rich Low_complexity Low_complexity 1 38 0 1978 111 39 29 chr11 75265339 75265650 -73517822 + AluSx SINE Alu 1 314 0 1689 170 0 59 chr11 75265876 75266199 -73517273 - AluJo SINE Alu -8 304 1 1209 201 5 5 chr11 75266991 75267215 -73516257 - MER58A DNA MER1_type 0 224 1 2332 106 0 10 chr11 75267922 75268234 -73515238 - AluY SINE Alu -2 309 1 859 117 0 29 chr11 75268773 75268910 -73514562 - FLAM_C SINE Alu 0 133 1 1097 221 29 21 chr11 75269493 75269773 -73513699 + AluJo SINE Alu 1 282 -30 887 74 116 16 chr11 75269826 75269947 -73513525 + AluSq/x SINE Alu 1 133 -179 180 0 0 0 chr11 75269947 75269967 -73513505 + (A)n Simple_repeat Simple_repeat 1 20 0 334 268 101 34 chr11 75270269 75270449 -73513023 + MIR SINE MIR 9 192 -66 1107 169 17 6 chr11 75271181 75271359 -73512113 - AluJo SINE Alu -13 299 120 236 151 0 19 chr11 75271407 75271460 -73512012 + (TA)n Simple_repeat Simple_repeat 2 53 0 774 155 16 0 chr11 75271465 75271594 -73511878 - AluJo SINE Alu -171 131 1 194 229 0 0 chr11 75271652 75271687 -73511785 - MIR SINE MIR -159 103 69 2082 98 3 3 chr11 75272348 75272645 -73510827 + AluSx SINE Alu 1 297 -15 1002 161 0 0 chr11 75272760 75272928 -73510544 + AluSg/x SINE Alu 137 304 -8 202 264 28 56 chr11 75272948 75273020 -73510452 + MIR SINE MIR 71 140 -122 626 83 25 133 chr11 75273027 75273147 -73510325 + U6 snRNA snRNA 1 107 0 26 30 0 0 chr11 75273147 75273180 -73510292 + AT_rich Low_complexity Low_complexity 1 33 0 1889 130 3 56 chr11 75273508 75273832 -73509640 - AluJo SINE Alu -5 307 1 418 188 0 0 chr11 75273875 75273944 -73509528 + FRAM/FAM SINE Alu 2 70 -106 28 0 0 0 chr11 75274010 75274038 -73509434 + AT_rich Low_complexity Low_complexity 1 28 0 1901 162 3 0 chr11 75274038 75274341 -73509131 - AluSx SINE Alu -8 304 1 224 209 0 30 chr11 75274363 75274430 -73509042 + CT-rich Low_complexity Low_complexity 4 68 0 2374 84 3 0 chr11 75274446 75274757 -73508715 - AluSp SINE Alu -1 312 1 1963 128 7 13 chr11 75275238 75275544 -73507928 + AluJb SINE Alu 1 304 -8 2009 122 7 0 chr11 75276056 75276351 -73507121 + AluSg SINE Alu 1 297 -13 21 36 0 0 chr11 75276456 75276484 -73506988 + AT_rich Low_complexity Low_complexity 1 28 0 289 319 22 0 chr11 75276549 75276640 -73506832 - L3 LINE CR1 -50 1527 1435 225 250 100 38 chr11 75276763 75276843 -73506629 - MIR SINE MIR -113 149 65 780 241 31 5 chr11 75276846 75277037 -73506435 + MIR SINE MIR 66 261 -1 659 176 112 0 chr11 75277072 75277197 -73506275 - AluSg/x SINE Alu -12 300 162 625 214 0 8 chr11 75277215 75277341 -73506131 + LTR44 LTR ERV1 212 336 -183 1273 174 84 45 chr11 75277352 75277639 -73505833 + AluJb SINE Alu 1 298 -4 2243 65 3 17 chr11 75277654 75277948 -73505524 + AluY SINE Alu 1 290 -21 422 226 188 39 chr11 75278048 75278229 -73505243 - MIR SINE MIR -41 221 14 554 223 116 0 chr11 75278490 75278611 -73504861 + L2 LINE L2 3136 3270 -2 196 303 76 0 chr11 75278614 75278680 -73504792 + MIR SINE MIR 122 192 -70 553 287 134 11 chr11 75278779 75279054 -73504418 - L2 LINE L2 0 3313 3005 223 321 282 3 chr11 75279560 75279847 -73503625 + L2 LINE L2 2377 2743 -571 1341 136 14 5 chr11 75279878 75280092 -73503380 - AluSg/x SINE Alu -11 299 84 220 297 109 10 chr11 75280353 75280454 -73503018 + L2 LINE L2 3184 3294 -19 2263 90 0 7 chr11 75280883 75281182 -73502290 + AluY SINE Alu 1 297 -14 1145 205 94 7 chr11 75281208 75281506 -73501966 - MER33 DNA MER1_type 0 324 1 2167 105 0 7 chr11 75281586 75281882 -73501590 + AluSx SINE Alu 1 294 -18 299 266 13 0 chr11 75282769 75282848 -73500624 + GA-rich Low_complexity Low_complexity 1 80 0 247 303 22 22 chr11 75282891 75282980 -73500492 + MIR SINE MIR 30 118 -90 583 268 70 38 chr11 75283311 75283524 -73499948 + MIR SINE MIR 22 241 -21 207 312 39 13 chr11 75283575 75283652 -73499820 + MIR SINE MIR 184 262 0 830 158 0 0 chr11 75284032 75284171 -73499301 + FLAM_C SINE Alu 1 139 -4 230 211 53 13 chr11 75284483 75284559 -73498913 - L2 LINE L2 -218 3054 2976 192 80 0 0 chr11 75284637 75284662 -73498810 - L2 LINE L2 -4 3268 3244 770 290 114 70 chr11 75285054 75285571 -73497901 + L3 LINE CR1 477 1016 -561 2345 67 0 16 chr11 75285574 75285888 -73497584 + AluSc SINE Alu 1 309 0 208 132 0 147 chr11 75286054 75286122 -73497350 + (A)n Simple_repeat Simple_repeat 1 58 0 802 204 39 108 chr11 75286122 75286379 -73497093 - MER72 LTR ERV1 -462 260 22 2265 103 0 0 chr11 75286379 75286690 -73496782 - AluSx SINE Alu 0 312 2 802 204 39 108 chr11 75286690 75286711 -73496761 - MER72 LTR ERV1 -700 22 1 848 217 140 0 chr11 75286711 75286931 -73496541 - MER72-int LTR ERV1 -1 7078 6604 2178 89 10 19 chr11 75287196 75287509 -73495963 - AluSx SINE Alu -2 310 1 864 169 18 42 chr11 75287529 75287695 -73495777 - AluSg/x SINE Alu -14 296 135 1901 161 0 0 chr11 75287695 75288006 -73495466 - AluJb SINE Alu -1 311 1 298 353 0 0 chr11 75288032 75288154 -73495318 - MER72-int LTR ERV1 -474 6202 6081 1160 165 4 47 chr11 75288337 75288573 -73494899 + AluJb SINE Alu 54 279 -33 324 0 0 0 chr11 75288573 75288609 -73494863 + (CA)n Simple_repeat Simple_repeat 1 36 0 189 107 0 0 chr11 75289266 75289294 -73494178 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 2025 128 16 0 chr11 75289297 75289603 -73493869 - AluSx SINE Alu -1 311 1 770 213 35 12 chr11 75289643 75289812 -73493660 - MER49 LTR ERV1 -138 785 613 2168 98 0 16 chr11 75289822 75290137 -73493335 + AluSx SINE Alu 3 312 0 1372 197 76 0 chr11 75290140 75290430 -73493042 + MER49 LTR ERV1 612 923 0 249 176 11 121 chr11 75291171 75291262 -73492210 + MIR3 SINE MIR 104 184 -24 270 271 31 62 chr11 75291696 75291825 -73491647 - MIR3 SINE MIR -79 129 5 2181 108 3 0 chr11 75293180 75293476 -73489996 - AluSx SINE Alu -15 297 1 321 214 10 39 chr11 75293478 75293581 -73489891 + MER46C DNA MER2_type 61 160 -178 738 164 16 8 chr11 75294578 75294706 -73488766 - FLAM_C SINE Alu 0 133 5 2250 87 0 3 chr11 75294876 75295175 -73488297 + AluSx SINE Alu 1 298 -14 208 275 14 29 chr11 75295727 75295796 -73487676 + MIR3 SINE MIR 109 176 -32 23 0 0 0 chr11 75297811 75297834 -73485638 + AT_rich Low_complexity Low_complexity 1 23 0 30 0 0 0 chr11 75297854 75297884 -73485588 + AT_rich Low_complexity Low_complexity 1 30 0 267 161 18 36 chr11 75297928 75297984 -73485488 - MIR SINE MIR -26 236 182 959 134 45 0 chr11 75298002 75298159 -73485313 + FRAM SINE Alu 1 163 -13 625 231 8 0 chr11 75298159 75298276 -73485196 - MIR SINE MIR -119 143 26 410 188 50 0 chr11 75298865 75298945 -73484527 - MLT1K LTR MaLR 0 588 505 2190 113 3 0 chr11 75298975 75299286 -73484186 + AluSx SINE Alu 1 312 0 201 262 208 40 chr11 75299449 75299598 -73483874 + L3 LINE CR1 1351 1524 -53 461 337 51 65 chr11 75299652 75299946 -73483526 - L2 LINE L2 0 3272 2983 215 345 78 14 chr11 75300099 75300241 -73483231 - L2 LINE L2 -508 2806 2656 1733 164 6 22 chr11 75300334 75300651 -73482821 + L1MB2 LINE L1 5476 5787 -396 864 175 18 12 chr11 75300665 75300831 -73482641 + AluJo SINE Alu 121 287 -25 329 113 57 0 chr11 75300831 75300884 -73482588 + L1MB2 LINE L1 5882 5937 -234 1174 171 23 5 chr11 75300895 75301111 -73482361 + AluJo SINE Alu 81 300 -12 732 178 70 38 chr11 75301111 75301324 -73482148 + L1MB2 LINE L1 5949 6168 -3 405 247 40 27 chr11 75302308 75302646 -73480826 + (TCTCTG)n Simple_repeat Simple_repeat 1 342 0 420 256 131 23 chr11 75304414 75304590 -73478882 - MIR SINE MIR -31 231 37 2019 195 52 32 chr11 75306680 75307010 -73476462 + L1MC4a LINE L1 7334 7677 -131 2187 96 3 0 chr11 75307010 75307302 -73476170 - AluSx SINE Alu -18 294 2 2019 195 52 32 chr11 75307302 75307437 -73476035 + L1MC4a LINE L1 7677 7808 0 2356 74 0 0 chr11 75307457 75307755 -73475717 + AluY SINE Alu 1 298 -13 4327 171 55 40 chr11 75307759 75309455 -73474017 + L1MB2 LINE L1 4378 6095 -76 994 134 0 0 chr11 75309562 75309711 -73473761 - AluSg/x SINE Alu 0 310 162 917 147 6 45 chr11 75309726 75309882 -73473590 - MER41-int LTR ERV1 -3293 2653 2504 1960 74 53 14 chr11 75309882 75310167 -73473305 + AluSq SINE Alu 1 296 -17 953 186 39 35 chr11 75310172 75310529 -73472943 + L1MCc LINE L1 1141 5848 -1093 3975 171 23 36 chr11 75310534 75311369 -73472103 + L1MB5 LINE L1 5345 6168 -6 4289 160 63 11 chr11 75311376 75311462 -73472010 + L1MB7 LINE L1 5869 5949 -1030 2058 101 10 29 chr11 75311462 75311770 -73471702 + AluSq SINE Alu 1 302 -11 4289 160 63 11 chr11 75311770 75312678 -73470794 + L1MB7 LINE L1 5949 6932 -47 2325 77 0 0 chr11 75312678 75312978 -73470494 - AluY SINE Alu -11 300 1 2243 96 3 0 chr11 75312978 75313279 -73470193 - AluSx SINE Alu -10 302 1 7764 224 20 9 chr11 75313279 75314122 -73469350 + L1M3de LINE L1 692 1155 -5530 2253 129 13 24 chr11 75314122 75314501 -73468971 + THE1C LTR MaLR 1 375 0 7764 224 20 9 chr11 75314501 75315528 -73467944 + L1M3de LINE L1 1155 2169 -4516 1961 115 31 0 chr11 75315533 75315819 -73467653 + AluSx SINE Alu 1 295 -17 1034 73 0 27 chr11 75315905 75316055 -73467417 + AluSp/q SINE Alu 163 308 -5 617 143 0 0 chr11 75316107 75316191 -73467281 + FLAM_C SINE Alu 36 119 -24 6607 221 57 19 chr11 75316223 75316914 -73466558 + L1M3de LINE L1 2920 3584 -3148 2083 125 0 0 chr11 75316914 75317218 -73466254 + AluJb SINE Alu 1 304 -8 6607 221 57 19 chr11 75317218 75317674 -73465798 + L1M3de LINE L1 3584 4021 -2711 1779 168 0 3 chr11 75317674 75317978 -73465494 - AluJb SINE Alu -9 303 1 6607 221 57 19 chr11 75317978 75318783 -73464689 + L1M3de LINE L1 4021 4946 -1786 2180 43 0 0 chr11 75318800 75319081 -73464391 + AluY SINE Alu 26 306 0 3634 198 39 40 chr11 75319388 75321173 -73462299 + L1MB3 LINE L1 2756 4542 -1641 2115 118 0 7 chr11 75321173 75321477 -73461995 + AluSx SINE Alu 1 302 -10 1318 215 0 14 chr11 75321485 75321773 -73461699 + AluJb SINE Alu 1 284 -28 3634 198 39 40 chr11 75321773 75322386 -73461086 + L1MB3 LINE L1 4549 5161 -1022 1450 219 0 7 chr11 75322386 75322674 -73460798 + AluJo SINE Alu 1 286 -26 3634 198 39 40 chr11 75322674 75322913 -73460559 + L1MB3 LINE L1 5161 5399 -784 2410 84 3 0 chr11 75322913 75323209 -73460263 - AluSp SINE Alu -16 297 1 3634 198 39 40 chr11 75323209 75323293 -73460179 + L1MB3 LINE L1 5399 6176 -7 971 188 53 54 chr11 75323400 75323459 -73460013 + L1MC2 LINE L1 1074 1132 -5809 2284 57 50 7 chr11 75323459 75323741 -73459731 + AluY SINE Alu 1 294 -17 971 188 53 54 chr11 75323741 75324106 -73459366 + L1MC2 LINE L1 1132 5848 -1093 3741 171 23 36 chr11 75324111 75324946 -73458526 + L1MB5 LINE L1 5345 6168 -6 4261 158 64 22 chr11 75324953 75325039 -73458433 + L1MB7 LINE L1 5869 5950 -1029 2063 117 9 35 chr11 75325039 75325356 -73458116 + AluSq SINE Alu 1 309 -4 4261 158 64 22 chr11 75325356 75326258 -73457214 + L1MB7 LINE L1 5950 6812 -167 2387 76 0 10 chr11 75326258 75326561 -73456911 - AluY SINE Alu -11 300 1 2400 99 0 0 chr11 75326561 75326863 -73456609 - AluSx SINE Alu -10 302 1 4261 158 64 22 chr11 75326863 75326917 -73456555 + L1MB7 LINE L1 6811 6979 0 5206 163 52 18 chr11 75326954 75328112 -73455360 + L1MC2 LINE L1 5945 7137 -2 21 36 0 0 chr11 75328415 75328443 -73455029 + AT_rich Low_complexity Low_complexity 1 28 0 566 202 70 101 chr11 75328464 75328643 -73454829 - MLT1F1 LTR MaLR -317 250 80 2242 110 10 0 chr11 75328643 75328944 -73454528 - AluSp SINE Alu -9 304 1 566 202 70 101 chr11 75328944 75329022 -73454450 - MLT1F1 LTR MaLR -487 80 1 913 258 104 8 chr11 75329022 75329386 -73454086 + L1MEc LINE L1 1398 1796 -4600 2303 106 6 10 chr11 75329592 75329904 -73453568 - AluSx SINE Alu -1 311 1 35 0 0 0 chr11 75330388 75330423 -73453049 + AT_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr11 75330537 75330558 -73452914 + (A)n Simple_repeat Simple_repeat 1 21 0 1132 143 0 11 chr11 75331082 75331257 -73452215 + AluJb SINE Alu 136 308 -4 2050 141 7 7 chr11 75331477 75331774 -73451698 - AluSx SINE Alu -15 297 1 1419 129 15 5 chr11 75332090 75332292 -73451180 + AluJb SINE Alu 86 289 -23 192 77 0 0 chr11 75332767 75332793 -73450679 + (A)n Simple_repeat Simple_repeat 1 26 0 579 194 7 56 chr11 75333016 75333103 -73450369 + L1M3de LINE L1 102 181 -6449 2326 113 3 0 chr11 75333103 75333412 -73450060 + AluSx SINE Alu 1 310 -2 579 194 7 56 chr11 75333412 75333468 -73450004 + L1M3de LINE L1 181 238 -6392 2669 207 63 31 chr11 75333701 75333866 -73449606 + L1M4 LINE L1 2 160 -6493 2320 71 3 51 chr11 75333866 75334177 -73449295 - AluSg SINE Alu -14 296 1 2669 207 63 31 chr11 75334177 75334656 -73448816 + L1M4 LINE L1 160 1187 -5466 1780 165 60 0 chr11 75334656 75334941 -73448531 + AluJb SINE Alu 1 302 -10 509 108 0 12 chr11 75334944 75335027 -73448445 + (GGAA)n Simple_repeat Simple_repeat 4 85 0 2198 112 3 0 chr11 75335072 75335359 -73448113 + AluSx SINE Alu 13 300 -12 809 155 0 0 chr11 75335359 75335475 -73447997 + FLAM_C SINE Alu 2 117 -16 5483 219 15 18 chr11 75335487 75335622 -73447850 + L1M3de LINE L1 568 702 -5951 2064 125 0 48 chr11 75335622 75335933 -73447539 - AluSx SINE Alu -16 296 1 5483 219 15 18 chr11 75335933 75336776 -73446696 + L1M3de LINE L1 702 1545 -5108 2280 129 13 24 chr11 75336776 75337155 -73446317 + THE1C LTR MaLR 1 375 0 5483 219 15 18 chr11 75337155 75337297 -73446175 + L1M3de LINE L1 1545 1686 -4967 2269 116 3 6 chr11 75337883 75338194 -73445278 - AluSx SINE Alu -2 310 1 469 260 6 63 chr11 75338240 75338316 -73445156 - MER84-int LTR ERV1 -377 6299 6220 1974 167 13 0 chr11 75338316 75338616 -73444856 - AluJb SINE Alu -8 304 1 431 300 38 0 chr11 75338616 75338776 -73444696 - MER70-int LTR ERVL -329 4694 4529 469 260 6 63 chr11 75338616 75338754 -73444718 - MER84-int LTR ERV1 -456 6220 4321 1248 177 53 21 chr11 75338946 75339189 -73444283 + AluJb SINE Alu 52 302 -10 339 164 0 15 chr11 75339794 75339861 -73443611 - MER49 LTR ERV1 -10 913 848 1398 267 47 51 chr11 75339871 75340444 -73443028 - MER72 LTR ERV1 -151 571 1 223 324 128 25 chr11 75341210 75341413 -73442059 + L2 LINE L2 2789 3002 -270 396 301 55 22 chr11 75341651 75341834 -73441638 - L2 LINE L2 -19 3294 3106 1201 233 96 3 chr11 75342141 75342506 -73440966 + L1MC4 LINE L1 7184 7582 -460 408 263 8 17 chr11 75342620 75342738 -73440734 + L1MC/D LINE L1 5410 5526 -2282 259 198 28 47 chr11 75342907 75343013 -73440459 + L1M4 LINE L1 4297 4400 -1746 197 217 67 33 chr11 75343674 75343734 -73439738 - L2 LINE L2 -583 2731 2670 2202 113 0 7 chr11 75343879 75344181 -73439291 + AluSx SINE Alu 1 300 -12 462 77 31 0 chr11 75344184 75344249 -73439223 + THE1B LTR MaLR 298 364 0 1503 199 32 35 chr11 75344504 75344816 -73438656 - AluJb SINE Alu -1 311 1 299 253 92 0 chr11 75345044 75345131 -73438341 + MLT1K LTR MaLR 488 582 -6 769 270 122 50 chr11 75345693 75346208 -73437264 + LTR67 LTR ERVL 6 557 0 1129 284 32 69 chr11 75346608 75347112 -73436360 - MLT1J LTR MaLR -2 509 25 1307 264 109 20 chr11 75347119 75347570 -73435902 - MLT1E LTR MaLR -7 586 96 1628 165 11 4 chr11 75347571 75347831 -73435641 + AluJo SINE Alu 1 262 -50 2041 121 0 28 chr11 75347894 75348224 -73435248 - AluSx SINE Alu 0 322 1 286 129 43 57 chr11 75348330 75348400 -73435072 - L1MC4 LINE L1 -145 7897 7829 600 244 30 0 chr11 75348424 75348592 -73434880 - L1ME LINE L1 -568 5596 5424 545 342 42 72 chr11 75348592 75348895 -73434577 + ERVL LTR ERVL 1186 1497 -4267 2480 83 0 6 chr11 75348895 75349208 -73434264 - AluY SINE Alu 0 311 1 1838 168 0 17 chr11 75349208 75349505 -73433967 - AluJo SINE Alu -12 300 9 545 342 42 72 chr11 75349505 75349863 -73433609 + ERVL LTR ERVL 1495 1828 -3936 534 70 0 0 chr11 75349913 75349984 -73433488 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 253 223 199 78 chr11 75352906 75353072 -73430400 + MIR3 SINE MIR 16 201 -7 476 253 25 19 chr11 75353437 75353595 -73429877 + MER103 DNA DNA 1 159 -7 247 343 0 0 chr11 75355071 75355138 -73428334 + L2 LINE L2 3205 3271 -1 294 29 0 0 chr11 75355206 75355241 -73428231 + (CA)n Simple_repeat Simple_repeat 1 35 0 218 363 6 6 chr11 75355968 75356147 -73427325 + (CA)n Simple_repeat Simple_repeat 2 180 0 660 221 28 12 chr11 75358021 75358206 -73425266 + MIR3 SINE MIR 4 185 -58 217 167 97 83 chr11 75359261 75359333 -73424139 + L2 LINE L2 3163 3235 -37 2546 79 0 0 chr11 75361493 75361798 -73421674 - AluSc SINE Alu -4 305 1 912 298 74 36 chr11 75361881 75361906 -73421566 - HAL1 LINE L1 -1447 1060 1037 2221 109 7 3 chr11 75361906 75362199 -73421273 + AluSx SINE Alu 1 294 -18 912 298 74 36 chr11 75362199 75362846 -73420626 - HAL1 LINE L1 -1470 1037 345 2033 133 41 0 chr11 75362846 75363140 -73420332 + AluSx SINE Alu 1 306 -6 912 298 74 36 chr11 75363140 75363344 -73420128 - HAL1 LINE L1 -2162 345 150 1947 156 0 10 chr11 75363560 75363874 -73419598 - AluJb SINE Alu -1 311 1 1880 150 18 7 chr11 75363983 75364269 -73419203 - AluJb SINE Alu -23 289 1 653 177 8 15 chr11 75364801 75364931 -73418541 - L1MC/D LINE L1 -636 5708 5580 2346 110 10 0 chr11 75365104 75365452 -73418020 - AluSx SINE Alu 0 351 1 587 153 110 31 chr11 75365511 75365674 -73417798 + MLT1C LTR MaLR 1 176 -291 207 100 0 0 chr11 75365675 75365705 -73417767 + (TTTTC)n Simple_repeat Simple_repeat 5 34 0 328 140 99 24 chr11 75365707 75365825 -73417647 + MLT1B LTR MaLR 165 383 -7 1763 325 32 11 chr11 75365922 75365957 -73417515 + ERVL LTR ERVL 2053 2086 -3678 1761 159 3 39 chr11 75365957 75366266 -73417206 - AluJo SINE Alu -14 298 1 1763 325 32 11 chr11 75366266 75366969 -73416503 + ERVL LTR ERVL 2086 2807 -2957 1237 185 28 3 chr11 75366995 75367390 -73416082 - L1MC/D LINE L1 -743 5403 5088 364 194 0 0 chr11 75367456 75367528 -73415944 - L1MC/D LINE L1 -1052 5094 5023 2061 136 10 3 chr11 75367536 75367831 -73415641 - AluSc SINE Alu -12 297 1 1195 39 0 0 chr11 75367833 75367963 -73415509 - AluSp SINE Alu -181 132 3 67 34 0 0 chr11 75367969 75368057 -73415415 + AT_rich Low_complexity Low_complexity 1 88 0 849 137 0 43 chr11 75368057 75368196 -73415276 - FLAM_C SINE Alu -10 133 1 1110 260 76 39 chr11 75368196 75368251 -73415221 - HsTC2a DNA Tc2 -1419 481 429 2338 116 0 6 chr11 75368251 75368562 -73414910 - AluSx SINE Alu -3 309 1 1110 260 76 39 chr11 75368562 75368967 -73414505 - HsTC2a DNA Tc2 -1471 429 4 479 211 61 88 chr11 75369032 75369260 -73414212 - HAL1 LINE L1 -401 2106 1885 392 224 16 40 chr11 75369324 75369449 -73414023 + MLT1H LTR MaLR 52 173 -376 242 238 32 0 chr11 75369655 75369718 -73413754 + MLT1I LTR MaLR 316 380 -29 1902 114 97 31 chr11 75369736 75370086 -73413386 + THE1C LTR MaLR 1 373 -2 1755 250 116 15 chr11 75370097 75370484 -73412988 - HAL1 LINE L1 -616 1891 1544 2106 125 41 24 chr11 75370484 75370853 -73412619 + THE1C LTR MaLR 1 375 0 1755 250 116 15 chr11 75370853 75371130 -73412342 - HAL1 LINE L1 -963 1544 1160 291 358 42 0 chr11 75371193 75371313 -73412159 + L2 LINE L2 3148 3272 0 266 309 127 0 chr11 75373143 75373269 -73410203 + MIR SINE MIR 33 174 -88 211 257 0 43 chr11 75375446 75375516 -73407956 - L2 LINE L2 0 3272 3206 315 354 102 8 chr11 75376173 75376300 -73407172 + L2 LINE L2 3125 3263 -9 568 253 107 0 chr11 75376306 75376456 -73407016 - MIR SINE MIR -77 185 20 800 10 0 29 chr11 75377127 75377229 -73406243 + (TG)n Simple_repeat Simple_repeat 1 99 0 497 297 89 10 chr11 75378715 75378917 -73404555 - MIR SINE MIR -1 261 44 945 171 32 0 chr11 75379465 75379623 -73403849 - MER20 DNA MER1_type -1 218 56 976 100 15 0 chr11 75379625 75379755 -73403717 + AluSq/x SINE Alu 1 132 -181 322 255 20 10 chr11 75380520 75380618 -73402854 + MIR SINE MIR 20 118 -90 425 256 131 23 chr11 75381190 75381366 -73402106 - MIR SINE MIR -31 231 37 791 218 104 39 chr11 75382820 75383128 -73400344 - L2 LINE L2 0 3313 2986 315 224 15 0 chr11 75383177 75383244 -73400228 + L2 LINE L2 3241 3308 -5 2055 125 23 7 chr11 75383258 75383561 -73399911 + AluSx SINE Alu 1 308 -4 1541 234 54 37 chr11 75383578 75384094 -73399378 + MER20B DNA MER1_type 259 783 0 186 321 0 24 chr11 75384323 75384407 -73399065 + MIR SINE MIR 108 189 -73 941 118 96 21 chr11 75385520 75385707 -73397765 + L1PB2 LINE L1 5950 6150 -1 210 281 74 58 chr11 75386000 75386078 -73397394 + L2 LINE L2 2635 2717 -597 2395 78 7 0 chr11 75386078 75386362 -73397110 + AluSx SINE Alu 1 289 -23 234 0 0 0 chr11 75386362 75386388 -73397084 + (CAATA)n Simple_repeat Simple_repeat 2 27 0 210 281 74 58 chr11 75386396 75386438 -73397034 + L2 LINE L2 2717 2757 -557 277 303 90 25 chr11 75386878 75387000 -73396472 + MIR SINE MIR 12 141 -121 2263 109 3 10 chr11 75387110 75387412 -73396060 + AluSx SINE Alu 1 300 -12 313 125 0 0 chr11 75387412 75387460 -73396012 + L1MC4 LINE L1 7566 7613 -429 1333 174 128 53 chr11 75387502 75387915 -73395557 + L1MC4 LINE L1 7598 8041 -1 443 191 160 43 chr11 75387915 75388103 -73395369 + L1ME3A LINE L1 5960 6169 -1 2276 110 10 0 chr11 75388114 75388423 -73395049 + AluSx SINE Alu 1 312 0 206 250 31 16 chr11 75388470 75388534 -73394938 + L2 LINE L2 3178 3242 -30 235 359 68 44 chr11 75389821 75390027 -73393445 + MIR SINE MIR 52 262 0 311 276 331 0 chr11 75390087 75390268 -73393204 + L2 LINE L2 3015 3255 -17 485 303 226 3 chr11 75390954 75391321 -73392151 - L3 LINE CR1 -142 1435 987 1185 268 20 35 chr11 75391828 75392228 -73391244 + MLT1I LTR MaLR 16 409 0 529 295 43 0 chr11 75392249 75392388 -73391084 - MIR3 SINE MIR -34 174 30 751 181 60 37 chr11 75393287 75393502 -73389970 - L1MB2 LINE L1 -3 6168 5949 1278 171 23 5 chr11 75393502 75393718 -73389754 - AluJo SINE Alu -12 300 81 313 86 0 77 chr11 75393721 75393773 -73389699 - L1MB2 LINE L1 -227 5941 5894 871 178 18 12 chr11 75393779 75393948 -73389524 - AluJo SINE Alu -22 290 121 1648 164 6 22 chr11 75393962 75394279 -73389193 - L1MB2 LINE L1 -396 5787 5476 242 338 78 14 chr11 75394372 75394514 -73388958 + L2 LINE L2 2656 2806 -508 477 333 51 65 chr11 75394667 75394961 -73388511 + L2 LINE L2 2983 3272 0 207 262 208 40 chr11 75395015 75395164 -73388308 - L3 LINE CR1 -53 1524 1351 2344 113 3 0 chr11 75395327 75395638 -73387834 - AluSx SINE Alu 0 312 1 390 188 50 0 chr11 75395668 75395748 -73387724 + MLT1K LTR MaLR 505 588 0 627 231 8 0 chr11 75396336 75396453 -73387019 + MIR SINE MIR 26 143 -119 1036 134 45 0 chr11 75396453 75396610 -73386862 - FRAM SINE Alu -13 163 1 263 161 18 36 chr11 75396628 75396684 -73386788 + MIR SINE MIR 182 236 -26 30 0 0 0 chr11 75396728 75396758 -73386714 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr11 75396778 75396801 -73386671 + AT_rich Low_complexity Low_complexity 1 23 0 212 275 14 29 chr11 75398815 75398884 -73384588 - MIR3 SINE MIR -32 176 109 2362 88 0 3 chr11 75399435 75399729 -73383743 - AluSx SINE Alu -14 298 6 2573 192 59 66 chr11 75399736 75400520 -73382952 - L1MC4a LINE L1 -502 7306 6599 1765 164 7 39 chr11 75400520 75400830 -73382642 + AluJo SINE Alu 1 300 -12 2573 192 59 66 chr11 75400830 75400871 -73382601 - L1MC4a LINE L1 -1209 6599 6559 2322 82 10 10 chr11 75401207 75401510 -73381962 + AluSc SINE Alu 1 303 -6 338 301 75 20 chr11 75401594 75401740 -73381732 + L2 LINE L2 3160 3313 0 2074 146 7 10 chr11 75401882 75402190 -73381282 - AluSx SINE Alu -5 307 1 310 275 142 10 chr11 75402343 75402645 -73380827 + L1 LINE L1 3073 3414 -2732 1809 164 0 17 chr11 75402780 75403079 -73380393 + AluJb SINE Alu 1 294 -18 337 276 60 9 chr11 75403089 75403205 -73380267 - L1ME3A LINE L1 -2 6168 6047 296 270 226 0 chr11 75403224 75403361 -73380111 + L1 LINE L1 3659 3826 -2320 614 198 156 45 chr11 75403435 75403562 -73379910 + L1MC4 LINE L1 7764 7876 -166 288 0 0 0 chr11 75403562 75403594 -73379878 + (CA)n Simple_repeat Simple_repeat 2 33 0 614 198 156 45 chr11 75403594 75403622 -73379850 + L1MC4 LINE L1 7876 7900 -142 1934 139 20 0 chr11 75403622 75403916 -73379556 + AluSx SINE Alu 1 300 -12 614 198 156 45 chr11 75403916 75404002 -73379470 + L1MC4 LINE L1 7900 8033 -9 1032 167 18 0 chr11 75404003 75404171 -73379301 + FRAM SINE Alu 1 171 -5 1125 175 43 9 chr11 75404273 75404484 -73378988 + AluJb SINE Alu 40 257 -55 259 198 28 47 chr11 75404540 75404646 -73378826 + L1 LINE L1 4297 4400 -1746 197 217 67 33 chr11 75405307 75405367 -73378105 - L2 LINE L2 -583 2731 2670 2270 111 7 0 chr11 75405512 75405809 -73377663 + AluSx SINE Alu 1 299 -13 278 354 40 17 chr11 75406000 75406175 -73377297 + ERVL LTR ERVL 5202 5380 -384 839 308 162 49 chr11 75406303 75407064 -73376408 + L2 LINE L2 222 1068 -2246 3265 151 45 9 chr11 75407482 75408065 -73375407 + L1M4c LINE L1 19 622 -5762 1007 117 0 0 chr11 75408065 75408193 -73375279 - AluSq/x SINE Alu -177 136 9 2056 209 25 45 chr11 75408202 75408473 -73374999 + L1M4c LINE L1 2379 2654 -3728 1665 192 14 3 chr11 75408473 75408764 -73374708 - AluJo SINE Alu -18 294 1 2056 209 25 45 chr11 75408764 75409119 -73374353 + L1M4c LINE L1 2654 2993 -3389 2479 50 0 0 chr11 75409750 75410056 -73373416 + AluY SINE Alu 1 306 0 2739 232 70 47 chr11 75410360 75411436 -73372036 + L1M4c LINE L1 2990 4090 -2292 2856 218 32 8 chr11 75411438 75412181 -73371291 + L1 LINE L1 4565 5325 -821 2262 116 0 7 chr11 75412181 75412483 -73370989 + AluSx SINE Alu 1 300 -12 749 288 55 9 chr11 75412746 75412965 -73370507 + MIR SINE MIR 32 260 -2 521 271 38 71 chr11 75413584 75413824 -73369648 + MIR SINE MIR 28 259 -3 550 288 7 7 chr11 75414006 75414152 -73369320 - MIR3 SINE MIR -19 189 44 258 314 153 0 chr11 75415281 75415405 -73368067 - L2 LINE L2 0 3313 3171 379 303 76 0 chr11 75416055 75416187 -73367285 + MIR3 SINE MIR 5 146 -62 769 207 207 14 chr11 75416371 75416579 -73366893 - MIR SINE MIR -13 249 2 269 305 122 0 chr11 75416709 75416791 -73366681 + MIR SINE MIR 39 130 -78 619 291 78 8 chr11 75416845 75417089 -73366383 - MIR SINE MIR 0 262 2 312 299 79 43 chr11 75417792 75418022 -73365450 + MIR3 SINE MIR 6 249 -13 221 347 88 12 chr11 75418095 75418265 -73365207 - MIR SINE MIR -71 191 9 320 328 80 0 chr11 75419418 75419543 -73363929 + L2 LINE L2 3122 3256 -16 488 289 31 0 chr11 75419590 75419718 -73363754 - MIR SINE MIR -109 153 22 412 307 0 26 chr11 75419977 75420091 -73363381 - MIR SINE MIR -66 142 32 424 269 71 33 chr11 75422084 75422266 -73361206 - MIR SINE MIR -12 250 62 222 325 137 21 chr11 75422298 75422532 -73360940 + L3 LINE CR1 946 1206 -371 372 251 86 74 chr11 75424031 75424206 -73359266 - MIR SINE MIR -76 186 10 460 302 101 34 chr11 75424655 75424834 -73358638 + MIR SINE MIR 7 197 -65 300 218 161 0 chr11 75424934 75425021 -73358451 - MIR SINE MIR -52 210 110 188 301 68 48 chr11 75425497 75425643 -73357829 - L2 LINE L2 -252 3061 2913 1024 109 6 0 chr11 75426318 75426474 -73356998 - L1MA3 LINE L1 -34 6271 6115 291 358 42 0 chr11 75427187 75427307 -73356165 - L2 LINE L2 0 3272 3148 337 358 173 3 chr11 75427552 75427910 -73355562 - L2 LINE L2 -571 2743 2325 857 184 98 11 chr11 75428793 75428967 -73354505 - MER5A DNA MER1_type 0 189 1 312 246 96 49 chr11 75429321 75429480 -73353992 + MIR3 SINE MIR 43 218 -44 * 717 276 12 0 chr11 75429471 75429641 -73353831 + MIR SINE MIR 89 260 -2 477 229 206 53 chr11 75430051 75430274 -73353198 + MIR SINE MIR 1 251 -11 244 318 146 9 chr11 75430734 75430844 -73352628 + L2 LINE L2 3134 3258 -14 365 324 77 16 chr11 75431826 75432008 -73351464 + L2 LINE L2 3080 3272 0 273 326 0 33 chr11 75432001 75432093 -73351379 - MIR SINE MIR 0 262 174 * 515 218 37 125 chr11 75432165 75432381 -73351091 + MIR SINE MIR 39 235 -27 252 263 106 111 chr11 75432747 75432964 -73350508 - L3 LINE CR1 -197 1380 1165 2278 117 3 0 chr11 75433330 75433639 -73349833 - AluSx SINE Alu -1 311 2 256 295 21 11 chr11 75434840 75434935 -73348537 + L2 LINE L2 2638 2733 -581 652 75 0 54 chr11 75435017 75435110 -73348362 - AluS SINE Alu -223 89 2 1167 154 43 0 chr11 75435285 75435493 -73347979 - L1MC4a LINE L1 -459 7349 7133 358 300 186 7 chr11 75435507 75435647 -73347825 - MIR SINE MIR -74 188 24 257 170 21 0 chr11 75435797 75435844 -73347628 + L1MC4 LINE L1 7458 7505 -537 352 75 19 19 chr11 75435945 75435998 -73347474 + FLAM SINE Alu 67 119 -14 9719 197 55 33 chr11 75436030 75436721 -73346751 + L1MB2 LINE L1 2334 3008 -3163 2231 125 0 0 chr11 75436721 75437025 -73346447 + AluJb SINE Alu 1 304 -8 9719 197 55 33 chr11 75437025 75437478 -73345994 + L1MB2 LINE L1 3008 3449 -2722 1932 169 0 3 chr11 75437478 75437785 -73345687 - AluJb SINE Alu -6 306 1 9719 197 55 33 chr11 75437785 75438614 -73344858 + L1MB2 LINE L1 3449 4258 -1913 2281 62 0 7 chr11 75438614 75438888 -73344584 + AluY SINE Alu 26 297 -14 9719 197 55 33 chr11 75438888 75440662 -73342810 + L1MB2 LINE L1 4258 6164 -7 385 300 67 71 chr11 75440877 75441117 -73342355 - L2 LINE L2 -63 3209 2971 247 277 30 50 chr11 75441164 75441265 -73342207 + L3 LINE CR1 1404 1502 -75 204 318 0 15 chr11 75442544 75442610 -73340862 + CT-rich Low_complexity Low_complexity 2 66 0 260 342 158 15 chr11 75443026 75443228 -73340244 - L2 LINE L2 -1172 2142 1912 385 233 101 79 chr11 75443434 75443651 -73339821 + MIR3 SINE MIR 9 262 0 1731 166 112 15 chr11 75443662 75444054 -73339418 + L1MB7 LINE L1 5634 6063 -121 999 196 0 16 chr11 75444111 75444295 -73339177 - AluSg/x SINE Alu 0 312 132 1985 167 0 0 chr11 75445131 75445425 -73338047 - AluJb SINE Alu -18 294 1 693 302 164 28 chr11 75445475 75446232 -73337240 + L2 LINE L2 2126 3008 -264 744 290 65 9 chr11 75446746 75446963 -73336509 + MIR SINE MIR 32 260 -2 739 171 0 39 chr11 75447020 75447149 -73336323 - FRAM SINE Alu -12 164 41 260 125 83 0 chr11 75447449 75447497 -73335975 + L3 LINE CR1 1524 1575 -2 195 243 0 0 chr11 75449164 75449201 -73334271 + L2 LINE L2 3224 3260 -12 51 31 0 0 chr11 75449463 75449528 -73333944 + AT_rich Low_complexity Low_complexity 1 65 0 2348 85 3 3 chr11 75449536 75449830 -73333642 + AluY SINE Alu 1 294 -17 649 179 0 30 chr11 75449830 75449955 -73333517 - FLAM_C SINE Alu -179 123 1 210 150 0 0 chr11 75449967 75450007 -73333465 + (T)n Simple_repeat Simple_repeat 1 40 0 2259 119 0 31 chr11 75450692 75451012 -73332460 - AluSx SINE Alu -2 310 1 474 267 82 60 chr11 75502193 75502425 -73281047 + L2 LINE L2 3077 3313 0 255 295 219 25 chr11 75502745 75502904 -73280568 - L3 LINE CR1 -7 1570 1443 2037 95 51 7 chr11 75502904 75503200 -73280272 - AluSp SINE Alu -3 310 2 255 295 219 25 chr11 75503200 75503359 -73280113 - L3 LINE CR1 -134 1443 1190 4028 116 60 53 chr11 75503933 75504575 -73278897 + L1PA16 LINE L1 5263 5899 -264 1992 106 0 0 chr11 75504575 75504849 -73278623 - AluSx SINE Alu -24 288 15 372 125 18 0 chr11 75504857 75504913 -73278559 - AluS SINE Alu -246 57 1 4028 116 60 53 chr11 75504913 75505175 -73278297 + L1PA16 LINE L1 5905 6162 -1 252 158 0 0 chr11 75505325 75505382 -73278090 + L1MB7 LINE L1 6128 6184 0 245 267 0 0 chr11 75505382 75505442 -73278030 + MIR SINE MIR 196 255 -7 634 270 82 16 chr11 75505668 75505870 -73277602 - MIR SINE MIR -12 250 37 194 234 344 0 chr11 75508098 75508162 -73275310 + MIR SINE MIR 108 193 -69 445 316 133 45 chr11 75508645 75509022 -73274450 + L2 LINE L2 2862 3271 -1 837 138 22 22 chr11 75509124 75509262 -73274210 + FLAM_C SINE Alu 1 138 -5 2140 96 17 0 chr11 75509279 75509572 -73273900 + AluSg SINE Alu 1 298 -12 269 256 64 13 chr11 75509615 75509693 -73273779 - L2 LINE L2 -69 3203 3122 1025 93 99 17 chr11 75509766 75509938 -73273534 + LTR9B LTR ERV1 1 186 -458 1315 84 6 0 chr11 75509938 75510116 -73273356 + AluSp SINE Alu 1 179 -134 2369 148 8 8 chr11 75510116 75510481 -73272991 + LTR9B LTR ERV1 280 644 0 223 203 149 0 chr11 75510481 75510555 -73272917 - L2 LINE L2 -211 3061 2977 2492 56 3 0 chr11 75511046 75511352 -73272120 + AluY SINE Alu 1 307 -4 263 342 18 35 chr11 75511403 75511517 -73271955 - MIR SINE MIR -79 129 18 1226 282 43 98 chr11 75512257 75513001 -73270471 + L2 LINE L2 2275 2977 -337 611 193 18 0 chr11 75513046 75513155 -73270317 + MLT1A1 LTR MaLR 255 365 0 607 177 57 0 chr11 75513155 75513279 -73270193 - L1MB8 LINE L1 -275 5903 5773 1974 118 18 98 chr11 75513279 75513539 -73269933 + LTR23 LTR ERV1 45 264 -173 1795 131 0 49 chr11 75513539 75513676 -73269796 + AluSx SINE Alu 7 149 -163 2010 74 34 0 chr11 75513676 75513984 -73269488 + AluY SINE Alu 3 319 0 1795 131 0 49 chr11 75513984 75514151 -73269321 + AluSx SINE Alu 149 297 -15 1974 118 18 98 chr11 75514151 75514289 -73269183 + LTR23 LTR ERV1 264 411 -26 444 290 46 8 chr11 75514306 75514437 -73269035 + L2 LINE L2 3137 3272 0 256 346 33 26 chr11 75514524 75514677 -73268795 + L2 LINE L2 3101 3254 -18 501 306 129 56 chr11 75514739 75515135 -73268337 + L2 LINE L2 2848 3272 0 261 57 0 0 chr11 75515600 75515635 -73267837 + (GGGA)n Simple_repeat Simple_repeat 4 38 0 189 87 43 22 chr11 75516203 75516249 -73267223 + (CACCC)n Simple_repeat Simple_repeat 5 51 0 255 252 216 9 chr11 75516581 75516692 -73266780 - L2 LINE L2 -9 3304 3171 400 249 207 21 chr11 75516997 75517190 -73266282 - L1ME4a LINE L1 -41 6080 5852 2115 83 17 0 chr11 75517836 75518126 -73265346 - AluSx SINE Alu -17 295 1 508 231 224 0 chr11 75518140 75518287 -73265185 - MIR SINE MIR -12 250 71 371 310 127 7 chr11 75519142 75519284 -73264188 - L2 LINE L2 -2 3270 3112 571 281 81 83 chr11 75519477 75519837 -73263635 + L2 LINE L2 2914 3272 0 1092 209 26 9 chr11 75519926 75520156 -73263316 + MIR SINE MIR 28 261 -1 2048 119 0 0 chr11 75520267 75520570 -73262902 + AluJb SINE Alu 5 307 -5 221 77 51 0 chr11 75520574 75520613 -73262859 + GA-rich Low_complexity Low_complexity 2 42 0 484 253 52 67 chr11 75520989 75521183 -73262289 - MIR SINE MIR -71 191 1 1986 114 3 44 chr11 75521579 75521896 -73261576 - AluSq SINE Alu -9 304 1 33 0 0 0 chr11 75521896 75521929 -73261543 + AT_rich Low_complexity Low_complexity 1 33 0 753 149 0 33 chr11 75521932 75522053 -73261419 - FLAM_C SINE Alu -16 117 1 235 253 203 0 chr11 75522202 75522281 -73261191 + MIR SINE MIR 76 170 -92 847 119 0 8 chr11 75522292 75522426 -73261046 + L1MB8 LINE L1 5308 5440 -743 * 1166 161 8 39 chr11 75522413 75522426 -73261046 + L1MB8 LINE L1 5896 5908 -270 1555 176 7 14 chr11 75522426 75522721 -73260751 + AluJb SINE Alu 1 293 -19 1166 161 8 39 chr11 75522721 75522961 -73260511 + L1MB8 LINE L1 5908 6141 -37 * 3514 163 14 44 chr11 75522951 75523597 -73259875 + L1 LINE L1 4643 5265 -881 1798 143 0 44 chr11 75523597 75523916 -73259556 - AluSx SINE Alu 0 306 1 3514 163 14 44 chr11 75523916 75524033 -73259439 + L1 LINE L1 5265 5384 -762 958 165 23 11 chr11 75524219 75524395 -73259077 - AluJb SINE Alu -16 296 119 416 253 86 48 chr11 75524660 75524846 -73258626 - MIR SINE MIR -34 228 36 231 313 0 0 chr11 75525018 75525098 -73258374 - MIR SINE MIR -112 150 71 689 165 0 0 chr11 75525280 75525389 -73258083 + MER5A DNA MER1_type 56 164 -25 2105 94 3 47 chr11 75526331 75526649 -73256823 + AluSq SINE Alu 5 308 -5 321 331 56 7 chr11 75526693 75526835 -73256637 - L3 LINE CR1 -13 1564 1416 603 258 56 28 chr11 75526898 75527076 -73256396 - MIR SINE MIR -52 210 28 276 352 47 43 chr11 75527418 75527651 -73255821 + L2 LINE L2 2069 2302 -1012 564 297 103 70 chr11 75527883 75528485 -73254987 + L2 LINE L2 2658 3271 -1 227 281 0 0 chr11 75528925 75528982 -73254490 + L2 LINE L2 3250 3306 -7 546 291 147 78 chr11 75529156 75529318 -73254154 + L3 LINE CR1 122 272 -1305 1988 127 6 16 chr11 75529318 75529632 -73253840 - AluSx SINE Alu 0 312 2 546 291 147 78 chr11 75529632 75529967 -73253505 + L3 LINE CR1 272 653 -924 352 245 122 20 chr11 75529977 75530075 -73253397 + L2 LINE L2 3206 3313 0 207 321 48 0 chr11 75530054 75530138 -73253334 + L3 LINE CR1 642 729 -848 * 186 103 35 0 chr11 75530157 75530186 -73253286 + L3 LINE CR1 1232 1261 -316 333 99 11 55 chr11 75530293 75530384 -73253088 + (GGGAA)n Simple_repeat Simple_repeat 4 90 0 1070 239 14 0 chr11 75530447 75530665 -73252807 + MER58A DNA MER1_type 4 224 0 2677 99 3 3 chr11 75530935 75531290 -73252182 - THE1A LTR MaLR 0 355 1 309 256 26 34 chr11 75533201 75533234 -73250238 + MIR SINE MIR 18 50 -158 653 179 116 0 chr11 75533234 75533346 -73250126 + FLAM_C SINE Alu 2 126 -7 309 256 26 34 chr11 75533346 75533434 -73250038 + MIR SINE MIR 50 142 -66 288 313 207 39 chr11 75533442 75533621 -73249851 - L2 LINE L2 -5 3308 3100 7570 218 63 71 chr11 75533642 75536009 -73247463 + L1M3e LINE L1 1 2537 -4570 2381 49 3 26 chr11 75536009 75536315 -73247157 + AluY SINE Alu 1 299 -12 7570 218 63 71 chr11 75536315 75536707 -73246765 + L1M3e LINE L1 2537 2931 -4176 958 184 4 70 chr11 75536708 75536936 -73246536 + AluJb SINE Alu 87 299 -13 2325 227 135 10 chr11 75536944 75537886 -73245586 + L1M1 LINE L1 3052 4130 -3435 2202 99 3 0 chr11 75538307 75538609 -73244863 + AluSx SINE Alu 1 303 -9 817 267 31 52 chr11 75538612 75539090 -73244382 - L1ME LINE L1 -296 5825 5310 849 137 40 124 chr11 75539812 75540061 -73243411 + L1MC4 LINE L1 6969 7196 -846 437 148 198 20 chr11 75540062 75540163 -73243309 + MIR SINE MIR 144 262 0 394 267 50 0 chr11 75540266 75540367 -73243105 + MIR SINE MIR 44 149 -59 2321 73 0 3 chr11 75541017 75541317 -73242155 - AluY SINE Alu -12 299 1 1532 136 58 4 chr11 75542415 75542658 -73240814 + AluJb SINE Alu 6 261 -51 2086 123 7 0 chr11 75542923 75543232 -73240240 + AluSx SINE Alu 2 312 0 869 308 58 36 chr11 75543240 75543789 -73239683 + L1ME3 LINE L1 5296 5856 -306 298 284 96 106 chr11 75544011 75544314 -73239158 + L2 LINE L2 2973 3272 0 466 340 57 11 chr11 75545414 75545624 -73237848 - MIR SINE MIR -40 222 5 506 242 247 22 chr11 75546175 75546353 -73237119 - MIR SINE MIR -41 221 4 244 214 214 10 chr11 75546358 75546456 -73237016 + L2 LINE L2 3151 3268 -4 621 350 147 19 chr11 75546490 75547027 -73236445 - L3 LINE CR1 -636 941 336 739 279 97 4 chr11 75548145 75548371 -73235101 + MIR SINE MIR 2 248 -14 3396 207 104 12 chr11 75549682 75550534 -73232938 - L1ME1 LINE L1 -5 6161 5232 242 267 76 48 chr11 75551698 75551803 -73231669 + L2 LINE L2 3157 3264 -8 200 170 38 0 chr11 75551816 75551869 -73231603 + (TA)n Simple_repeat Simple_repeat 1 55 0 25 0 0 0 chr11 75552229 75552254 -73231218 + AT_rich Low_complexity Low_complexity 1 25 0 362 241 89 136 chr11 75552696 75553020 -73230452 + L2 LINE L2 3005 3313 0 241 315 225 0 chr11 75553687 75553798 -73229674 + L2 LINE L2 3137 3272 0 2214 89 0 25 chr11 75553925 75554241 -73229231 + AluSc SINE Alu 2 309 0 1516 188 0 10 chr11 75554742 75555034 -73228438 + AluJb SINE Alu 1 289 -23 388 314 145 6 chr11 75555045 75555204 -73228268 + MIR SINE MIR 20 200 -62 246 320 0 13 chr11 75555491 75555566 -73227906 - MIR SINE MIR -102 106 33 208 191 85 0 chr11 75556509 75556556 -73226916 + L2 LINE L2 3262 3312 -1 490 253 112 19 chr11 75556638 75556886 -73226586 - MIR SINE MIR 0 262 3 267 300 158 63 chr11 75557285 75557588 -73225884 - L2 LINE L2 -112 3160 2829 383 318 5 60 chr11 75558292 75558412 -73225060 - MER117 DNA MER1_type -6 191 85 2296 84 0 0 chr11 75558412 75558709 -73224763 + AluY SINE Alu 1 297 -14 383 318 5 60 chr11 75558709 75558789 -73224683 - MER117 DNA MER1_type -112 85 2 237 303 15 0 chr11 75559488 75559554 -73223918 - L2 LINE L2 -1 3271 3205 664 326 40 30 chr11 75559615 75560262 -73223210 - L1ME3A LINE L1 -137 5984 5319 355 254 18 110 chr11 75560351 75560411 -73223061 + MIR SINE MIR 20 84 -160 2415 57 0 3 chr11 75560411 75560708 -73222764 - AluY SINE Alu -15 296 1 355 254 18 110 chr11 75560708 75560824 -73222648 + MIR SINE MIR 84 182 -62 359 255 57 19 chr11 75560971 75561077 -73222395 + MIR SINE MIR 9 118 -144 2301 103 0 0 chr11 75561147 75561458 -73222014 + AluY SINE Alu 1 311 0 1907 141 0 0 chr11 75562063 75562360 -73221112 + AluSx SINE Alu 1 297 -15 2029 110 10 0 chr11 75562457 75562747 -73220725 + AluSx SINE Alu 1 293 -19 1693 129 0 4 chr11 75562758 75563013 -73220459 + AluSq SINE Alu 51 304 -9 213 290 0 86 chr11 75563013 75563106 -73220366 + MIR SINE MIR 59 143 -119 187 221 18 150 chr11 75563112 75563225 -73220247 + MIR SINE MIR 109 206 -56 211 341 148 22 chr11 75563730 75563953 -73219519 + L2 LINE L2 3022 3272 0 429 345 48 0 chr11 75564126 75564291 -73219181 + MIR3 SINE MIR 30 202 -6 220 307 10 50 chr11 75565205 75565306 -73218166 - MIR3 SINE MIR -2 206 110 286 324 63 21 chr11 75565350 75565492 -73217980 + MIR SINE MIR 66 213 -49 1159 195 67 131 chr11 75565685 75565769 -73217703 - L1MC4 LINE L1 0 8042 7954 2320 77 3 3 chr11 75565769 75566081 -73217391 + AluSp SINE Alu 2 313 0 1159 195 67 131 chr11 75566081 75566561 -73216911 - L1MC4 LINE L1 -88 7954 7514 246 329 13 0 chr11 75566590 75566669 -73216803 - L2 LINE L2 0 3272 3193 327 299 49 43 chr11 75567328 75567512 -73215960 - L2 LINE L2 -1 3312 3128 219 254 290 24 chr11 75567572 75567697 -73215775 - MIR SINE MIR -3 259 169 2173 104 3 0 chr11 75567697 75567995 -73215477 + AluSg SINE Alu 1 299 -11 219 254 290 24 chr11 75567995 75568038 -73215434 - MIR SINE MIR -93 169 46 561 321 203 22 chr11 75568393 75568842 -73214630 + L3 LINE CR1 821 1350 -227 187 319 0 0 chr11 75568844 75568891 -73214581 - L2 LINE L2 -16 3256 3210 4724 136 22 46 chr11 75569194 75569215 -73214257 + L1MB7 LINE L1 5313 5333 -851 2424 83 0 0 chr11 75569215 75569527 -73213945 + AluSx SINE Alu 1 312 0 4724 136 22 46 chr11 75569527 75570378 -73213094 + L1MB7 LINE L1 5333 6164 -20 204 279 147 37 chr11 75570421 75570557 -73212915 + L3 LINE CR1 1419 1569 -8 592 270 13 13 chr11 75571144 75571296 -73212176 - MIR SINE MIR -83 179 28 2268 97 3 0 chr11 75571336 75571644 -73211828 + AluSg SINE Alu 1 309 -1 1651 134 31 132 chr11 75572365 75572752 -73210720 + MER7A DNA MER2_type 1 346 0 261 320 94 47 chr11 75573148 75573382 -73210090 + L2 LINE L2 2579 2823 -491 201 281 91 25 chr11 75575779 75575900 -73207572 + MIR3 SINE MIR 13 141 -67 501 209 31 39 chr11 75576317 75576446 -73207026 + MIR3 SINE MIR 15 142 -66 274 174 0 0 chr11 75577180 75577226 -73206246 - L2 LINE L2 -14 3258 3213 474 310 35 25 chr11 75577573 75577770 -73205702 - MIR3 SINE MIR -1 207 9 1180 84 108 0 chr11 75578213 75578528 -73204944 + AluSc SINE Alu 1 333 0 300 261 11 45 chr11 75578741 75578829 -73204643 - MIR3 SINE MIR -43 165 81 2352 73 0 0 chr11 75579743 75580046 -73203426 - AluSx SINE Alu -9 303 1 2199 95 0 10 chr11 75580227 75580532 -73202940 - AluSx SINE Alu -10 302 1 236 315 24 55 chr11 75580546 75580673 -73202799 - MIR SINE MIR -46 216 94 776 208 181 57 chr11 75580842 75581072 -73202400 + L2 LINE L2 3016 3285 -28 2267 90 0 3 chr11 75581072 75581384 -73202088 - AluY SINE Alu 0 311 1 776 208 181 57 chr11 75581384 75581418 -73202054 + L2 LINE L2 3285 3313 0 555 292 58 25 chr11 75581432 75581675 -73201797 + MIR SINE MIR 12 262 0 1510 131 75 18 chr11 75581771 75581931 -73201541 - AluJo SINE Alu -14 298 114 213 39 0 0 chr11 75581931 75581957 -73201515 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1510 131 75 18 chr11 75581957 75582078 -73201394 - AluJo SINE Alu -198 114 1 2251 84 3 10 chr11 75582086 75582385 -73201087 - AluSp SINE Alu -16 297 1 1106 147 277 13 chr11 75582835 75583073 -73200399 + AluJo SINE Alu 1 301 -1 2122 101 7 7 chr11 75583159 75583466 -73200006 + AluSx SINE Alu 1 307 -5 739 193 71 0 chr11 75583808 75583948 -73199524 + L1MC4a LINE L1 6445 6594 -1214 1543 114 13 0 chr11 75583950 75584178 -73199294 - AluSg/x SINE Alu -5 307 77 716 165 0 0 chr11 75584213 75584322 -73199150 - AluSq/x SINE Alu -203 109 1 330 192 64 51 chr11 75584326 75584404 -73199068 + L1MC4 LINE L1 6599 6677 -1365 2570 196 90 70 chr11 75584404 75584740 -73198732 + L1MC4a LINE L1 6610 6938 -870 204 97 0 0 chr11 75584740 75584771 -73198701 + (TAAA)n Simple_repeat Simple_repeat 4 34 0 2570 196 90 70 chr11 75584771 75584796 -73198676 + L1MC4a LINE L1 6938 6961 -847 2306 52 16 26 chr11 75584796 75585101 -73198371 - AluY SINE Alu -9 302 1 2570 196 90 70 chr11 75585101 75585227 -73198245 + L1MC4a LINE L1 6961 7083 -725 1535 153 7 30 chr11 75585227 75585527 -73197945 + AluJo SINE Alu 12 304 -8 2570 196 90 70 chr11 75585527 75585617 -73197855 + L1MC4a LINE L1 7083 7170 -638 2258 79 0 0 chr11 75585617 75585907 -73197565 + AluSg SINE Alu 1 290 -20 2570 196 90 70 chr11 75585907 75586174 -73197298 + L1MC4a LINE L1 7170 7474 -334 1291 223 106 61 chr11 75586181 75586370 -73197102 - MLT1E3 LTR MaLR 0 624 445 2128 114 0 7 chr11 75586370 75586669 -73196803 - AluSq SINE Alu -12 301 5 1291 223 106 61 chr11 75586669 75586941 -73196531 - MLT1E3 LTR MaLR -179 445 142 2208 84 3 3 chr11 75587082 75587381 -73196091 + AluY SINE Alu 1 299 -12 211 218 0 36 chr11 75587484 75587539 -73195933 - MIR SINE MIR 0 262 210 302 255 71 31 chr11 75587732 75587830 -73195642 - MIR SINE MIR -16 246 145 258 32 0 0 chr11 75587896 75587927 -73195545 + (TG)n Simple_repeat Simple_repeat 2 32 0 359 279 105 36 chr11 75588251 75588671 -73194801 + L1MC4a LINE L1 4883 5331 -815 312 362 31 46 chr11 75588672 75588868 -73194604 - MER91A DNA MER1_type 0 196 4 1664 213 58 19 chr11 75588868 75589726 -73193746 + L1ME1 LINE L1 4957 5733 -433 270 118 0 0 chr11 75589726 75589760 -73193712 - LOR1a LTR ERV1 0 497 464 1875 154 71 6 chr11 75589864 75590201 -73193271 - LOR1b LTR ERV1 -102 359 1 1597 156 39 104 chr11 75590202 75590663 -73192809 + L1ME1 LINE L1 5731 6161 -5 405 234 196 35 chr11 75590669 75590736 -73192736 + L1MC4a LINE L1 5426 5481 -823 243 88 0 0 chr11 75590736 75590770 -73192702 + (TA)n Simple_repeat Simple_repeat 1 34 0 405 234 196 35 chr11 75590770 75591108 -73192364 + L1MC4a LINE L1 5481 5573 -731 2474 50 0 31 chr11 75591141 75591461 -73192011 + AluY SINE Alu 1 310 -1 237 65 0 0 chr11 75591842 75591873 -73191599 + (CATTC)n Simple_repeat Simple_repeat 5 35 0 404 299 166 17 chr11 75591961 75592202 -73191270 - L2 LINE L2 -18 3254 2978 213 39 0 0 chr11 75592298 75592324 -73191148 + (T)n Simple_repeat Simple_repeat 1 26 0 273 265 77 43 chr11 75592392 75592509 -73190963 - MIR SINE MIR -74 134 14 440 197 78 197 chr11 75592930 75593104 -73190368 - MIR SINE MIR -14 248 116 204 40 0 0 chr11 75593104 75593129 -73190343 + (TA)n Simple_repeat Simple_repeat 1 25 0 440 197 78 197 chr11 75593129 75593223 -73190249 - MIR SINE MIR -146 116 12 573 328 128 22 chr11 75593833 75593992 -73189480 - LTR16A LTR ERVL 0 450 309 2439 91 26 50 chr11 75593992 75594043 -73189429 - THE1C LTR MaLR 0 375 324 2247 59 20 26 chr11 75594043 75594346 -73189126 - AluY SINE Alu -10 301 1 2439 91 26 50 chr11 75594346 75594678 -73188794 - THE1C LTR MaLR -51 324 1 573 328 128 22 chr11 75594678 75594923 -73188549 - LTR16A LTR ERVL -141 309 3 2414 61 0 0 chr11 75595198 75595492 -73187980 + AluY SINE Alu 1 294 -17 32 26 0 0 chr11 75595509 75595548 -73187924 + AT_rich Low_complexity Low_complexity 1 39 0 354 143 0 0 chr11 75595631 75595680 -73187792 + Alu SINE Alu 2 50 -250 181 330 19 19 chr11 75595745 75595851 -73187621 - L2 LINE L2 -453 2861 2756 2087 96 0 0 chr11 75596049 75596410 -73187062 - AluY SINE Alu 0 361 1 1523 236 115 55 chr11 75596496 75596983 -73186489 + MLT1G1 LTR MaLR 73 588 -7 512 202 187 50 chr11 75597021 75597073 -73186399 + L1ME LINE L1 5216 5259 -903 1580 208 61 35 chr11 75597073 75597448 -73186024 - MLT1B LTR MaLR -4 386 2 512 202 187 50 chr11 75597448 75597649 -73185823 + L1ME LINE L1 5259 5503 -659 1560 322 39 56 chr11 75597650 75598099 -73185373 + ERVL LTR ERVL 2487 2921 -2843 2235 110 0 0 chr11 75598099 75598407 -73185065 - AluSg1 SINE Alu -1 308 1 1560 322 39 56 chr11 75598407 75598655 -73184817 + ERVL LTR ERVL 2921 3172 -2592 560 269 69 61 chr11 75598660 75598905 -73184567 + ERVL LTR ERVL 3498 3744 -2020 810 317 48 31 chr11 75599144 75599969 -73183503 + ERVL LTR ERVL 4353 5218 -436 2146 305 20 22 chr11 75600415 75600696 -73182776 - ERVL LTR ERVL -2395 3369 3089 1927 134 0 29 chr11 75600696 75601009 -73182463 + AluSx SINE Alu 5 308 -4 2146 305 20 22 chr11 75601009 75601730 -73181742 - ERVL LTR ERVL -2675 3089 2292 2325 88 3 0 chr11 75601739 75602044 -73181428 - AluSq SINE Alu -7 306 1 539 278 174 30 chr11 75602068 75602367 -73181105 + ERVL LTR ERVL 4764 5105 -659 1011 195 10 19 chr11 75602370 75602575 -73180897 + AluJo SINE Alu 85 287 -25 970 111 11 17 chr11 75602589 75602770 -73180702 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 636 169 13 29 chr11 75602784 75603108 -73180364 + GA-rich Low_complexity Low_complexity 1 318 0 401 292 79 63 chr11 75603108 75603423 -73180049 + ERVL LTR ERVL 5049 5368 -286 2135 271 161 1 chr11 75604211 75604948 -73178524 - L2 LINE L2 -2431 883 29 2076 83 0 28 chr11 75605730 75606048 -73177424 + AluSx SINE Alu 1 310 0 2027 112 0 3 chr11 75606055 75606341 -73177131 + AluSc SINE Alu 7 291 -18 1971 108 0 4 chr11 75606341 75606655 -73176817 + AluSc SINE Alu 1 313 0 788 195 119 0 chr11 75606822 75606981 -73176491 - AluJb SINE Alu 0 312 135 276 292 50 68 chr11 75607115 75607276 -73176196 - L1MC4a LINE L1 -971 6837 6680 24 0 0 0 chr11 75608253 75608277 -73175195 + AT_rich Low_complexity Low_complexity 1 24 0 663 301 73 47 chr11 75608356 75608848 -73174624 - MLT1K LTR MaLR 0 588 84 697 150 29 0 chr11 75609013 75609153 -73174319 + CT-rich Low_complexity Low_complexity 1 144 0 1902 150 0 3 chr11 75609153 75609453 -73174019 - AluJb SINE Alu -11 301 3 232 205 320 0 chr11 75609698 75609776 -73173696 - HAL1 LINE L1 -604 1903 1801 2195 92 0 0 chr11 75609813 75610105 -73173367 - AluSx SINE Alu -20 292 1 21 0 0 0 chr11 75610477 75610498 -73172974 + AT_rich Low_complexity Low_complexity 1 21 0 308 309 42 111 chr11 75610526 75610608 -73172864 + HAL1 LINE L1 1 87 -2420 2062 108 37 0 chr11 75610608 75610904 -73172568 + AluSx SINE Alu 1 307 -5 308 309 42 111 chr11 75610904 75611083 -73172389 + HAL1 LINE L1 87 244 -2263 313 297 81 7 chr11 75611309 75611457 -73172015 + HAL1 LINE L1 739 897 -1610 1729 151 3 31 chr11 75611483 75611624 -73171848 + AluJo SINE Alu 5 148 -164 2447 63 0 0 chr11 75611624 75611925 -73171547 + AluY SINE Alu 1 301 -10 1729 151 3 31 chr11 75611925 75612100 -73171372 + AluJo SINE Alu 148 312 0 1618 112 119 8 chr11 75612154 75612414 -73171058 + AluSg1 SINE Alu 1 289 -20 1278 299 48 13 chr11 75612453 75612989 -73170483 + HAL1 LINE L1 1174 1728 -779 1944 130 3 3 chr11 75612989 75613282 -73170190 + AluSg SINE Alu 1 293 -17 2340 63 3 7 chr11 75613282 75613583 -73169889 + AluY SINE Alu 1 300 -11 496 315 73 6 chr11 75615337 75615502 -73167970 + MER91A DNA MER1_type 1 176 -20 240 263 79 26 chr11 75615501 75615577 -73167895 + MER91A DNA MER1_type 90 169 -27 * 951 269 98 40 chr11 75615822 75616201 -73167271 + LTR16C LTR ERVL 91 491 0 2010 116 33 0 chr11 75616455 75616756 -73166716 + AluSx SINE Alu 1 311 -1 1471 153 17 42 chr11 75617870 75618157 -73165315 - AluJo SINE Alu -15 297 18 216 0 0 0 chr11 75618394 75618418 -73165054 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2125 92 3 0 chr11 75618432 75618716 -73164756 - AluSg SINE Alu -25 285 1 1304 360 56 13 chr11 75619416 75620039 -73163433 + ERVL LTR ERVL 1574 2223 -3541 1484 306 29 6 chr11 75620108 75620595 -73162877 + ERVL LTR ERVL 3961 4458 -1306 1255 157 4 38 chr11 75620600 75620836 -73162636 - AluJo SINE Alu -12 300 73 393 188 0 0 chr11 75620914 75620983 -73162489 - AluJo SINE Alu -233 69 1 1490 285 53 54 chr11 75620984 75621591 -73161881 + ERVL LTR ERVL 4475 5080 -684 1363 188 0 56 chr11 75622073 75622393 -73161079 + AluJo SINE Alu 1 302 -10 1877 136 13 7 chr11 75623021 75623330 -73160142 + AluJb SINE Alu 1 311 -1 211 306 33 41 chr11 75624218 75624339 -73159133 - L2 LINE L2 -2408 906 787 809 150 0 36 chr11 75625038 75625178 -73158294 - AluJb SINE Alu -176 136 2 2310 72 3 7 chr11 75625542 75625848 -73157624 - AluY SINE Alu -6 305 1 1542 162 24 24 chr11 75625855 75626152 -73157320 - AluJo SINE Alu -15 297 1 1137 169 4 84 chr11 75626472 75626524 -73156948 - MER20 DNA MER1_type 0 219 164 833 144 0 8 chr11 75626524 75626656 -73156816 - FLAM_C SINE Alu 0 133 3 1137 169 4 84 chr11 75626656 75626840 -73156632 - MER20 DNA MER1_type -55 164 2 502 215 20 145 chr11 75627272 75627386 -73156086 - MIR SINE MIR -4 258 178 2332 63 0 7 chr11 75627386 75627686 -73155786 + AluY SINE Alu 2 299 -12 502 215 20 145 chr11 75627686 75627771 -73155701 - MIR SINE MIR -84 178 84 196 304 125 0 chr11 75627798 75627854 -73155618 - L2 LINE L2 -4 3309 3247 2221 82 3 3 chr11 75627855 75628159 -73155313 - AluSc SINE Alu -5 304 1 180 250 113 81 chr11 75628162 75628286 -73155186 - MIR SINE MIR -102 160 33 318 298 100 119 chr11 75628391 75628820 -73154652 - L2 LINE L2 -28 3244 2824 1173 216 22 0 chr11 75628860 75629082 -73154390 + MIR SINE MIR 15 241 -21 552 233 108 46 chr11 75629388 75629628 -73153844 + L1ME3 LINE L1 4806 5060 -1086 661 194 12 19 chr11 75629639 75629723 -73153749 + L1ME3 LINE L1 5119 5203 -943 2103 139 17 0 chr11 75629723 75630024 -73153448 + AluSx SINE Alu 1 306 -6 661 194 12 19 chr11 75630024 75630099 -73153373 + L1ME3 LINE L1 5203 5277 -869 1075 219 53 104 chr11 75630131 75630441 -73153031 + L1ME3 LINE L1 5750 6033 -129 1858 97 97 0 chr11 75630441 75630688 -73152784 - AluSq SINE Alu -32 281 11 1075 219 53 104 chr11 75630688 75630810 -73152662 + L1ME3 LINE L1 6033 6160 -2 2311 89 0 7 chr11 75630813 75631106 -73152366 - AluY SINE Alu -20 291 1 438 287 94 73 chr11 75631124 75631410 -73152062 + L1MEd LINE L1 660 951 -5168 5926 191 74 105 chr11 75631440 75632243 -73151229 + L1MDa LINE L1 19 845 -5865 1487 187 34 73 chr11 75632243 75632628 -73150844 - MLT1A2 LTR MaLR -4 370 1 5926 191 74 105 chr11 75632628 75633260 -73150212 + L1MDa LINE L1 845 1495 -5215 830 128 0 32 chr11 75633260 75633385 -73150087 + FLAM_C SINE Alu 6 126 -17 5926 191 74 105 chr11 75633385 75634244 -73149228 + L1MDa LINE L1 1495 2543 -4167 538 51 0 0 chr11 75634244 75634322 -73149150 + L1PB1 LINE L1 6074 6151 0 5926 191 74 105 chr11 75634322 75634592 -73148880 + L1MDa LINE L1 2543 2820 -3890 947 191 0 6 chr11 75634602 75634780 -73148692 + L1MC3 LINE L1 7406 7582 -203 859 169 56 24 chr11 75634781 75634978 -73148494 + L1MC2 LINE L1 6125 6331 -13 2163 127 7 3 chr11 75634978 75635286 -73148186 + AluSx SINE Alu 1 309 -3 859 169 56 24 chr11 75635286 75635301 -73148171 + L1MC2 LINE L1 6331 6344 0 281 123 233 0 chr11 75635453 75635526 -73147946 + L1ME LINE L1 5684 5773 -391 1311 206 155 65 chr11 75635532 75636009 -73147463 + MLT2B1 LTR ERVL 1 520 0 806 287 52 36 chr11 75636013 75636369 -73147103 + L1M4 LINE L1 3654 4022 -2124 396 0 0 0 chr11 75636369 75636413 -73147059 + (CA)n Simple_repeat Simple_repeat 2 45 0 806 287 52 36 chr11 75636413 75636555 -73146917 + L1M4 LINE L1 4022 4160 -1986 877 216 34 49 chr11 75636565 75636668 -73146804 + AluJo SINE Alu 1 101 -211 2351 115 3 3 chr11 75636668 75636980 -73146492 - AluSx SINE Alu 0 312 1 877 216 34 49 chr11 75636980 75637080 -73146392 + AluJo SINE Alu 101 201 -111 2657 52 0 0 chr11 75637351 75637656 -73145816 + AluY SINE Alu 1 305 -6 2479 68 0 19 chr11 75638728 75639038 -73144434 - AluY SINE Alu -7 304 1 2455 76 7 0 chr11 75639384 75639685 -73143787 - AluSp SINE Alu -10 303 1 580 208 78 26 chr11 75639864 75640018 -73143454 + MIR SINE MIR 98 259 -3 22 70 0 0 chr11 75640022 75640065 -73143407 + AT_rich Low_complexity Low_complexity 1 43 0 539 221 107 14 chr11 75640121 75640261 -73143211 + MLT1I LTR MaLR 26 178 -231 1804 138 11 7 chr11 75640418 75640701 -73142771 - AluSg SINE Alu -4 306 23 2419 67 3 22 chr11 75641022 75641334 -73142138 - AluY SINE Alu -5 306 1 9044 214 18 10 chr11 75641334 75641993 -73141479 - L1 LINE L1 -1317 4829 4177 2520 76 0 0 chr11 75641993 75642294 -73141178 - AluY SINE Alu -10 301 1 9044 214 18 10 chr11 75642294 75643793 -73139679 - L1 LINE L1 -1969 4177 2654 2559 84 0 0 chr11 75643852 75644163 -73139309 + AluY SINE Alu 1 311 0 1503 199 29 7 chr11 75645682 75645958 -73137514 + AluJo SINE Alu 1 282 -30 537 199 0 0 chr11 75645974 75646105 -73137367 + GA-rich Low_complexity Low_complexity 4 134 0 492 316 181 26 chr11 75646362 75646827 -73136645 - L2 LINE L2 -425 2889 2353 228 215 154 31 chr11 75646877 75646942 -73136530 - L2 LINE L2 0 3272 3200 425 265 126 7 chr11 75647013 75647164 -73136308 + MER21B LTR ERV1 333 501 -362 1766 145 25 7 chr11 75647312 75647463 -73136009 - AluSx SINE Alu -24 288 128 207 0 0 0 chr11 75647463 75647486 -73135986 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1766 145 25 7 chr11 75647486 75647617 -73135855 - AluSx SINE Alu -184 128 1 2013 149 3 7 chr11 75647765 75648061 -73135411 - AluJb SINE Alu -15 297 3 1499 140 0 5 chr11 75648620 75648842 -73134630 + AluJb SINE Alu 71 291 -21 617 187 56 52 chr11 75648919 75649124 -73134348 - MER33 DNA MER1_type -264 60 1 697 229 60 6 chr11 75649125 75649291 -73134181 + MIR SINE MIR 67 241 -21 2059 159 0 3 chr11 75649410 75649706 -73133766 + AluJo SINE Alu 1 295 -17 2053 148 0 22 chr11 75649706 75650024 -73133448 + AluSx SINE Alu 1 311 -1 224 208 0 21 chr11 75650776 75650824 -73132648 + CT-rich Low_complexity Low_complexity 95 141 0 1939 138 30 7 chr11 75650826 75651124 -73132348 - AluJo SINE Alu -7 305 1 197 116 0 47 chr11 75651134 75651177 -73132295 + (TCTCCC)n Simple_repeat Simple_repeat 3 43 0 431 256 131 45 chr11 75651762 75651938 -73131534 - L1MC4a LINE L1 -1791 6017 5827 307 282 77 17 chr11 75651914 75652031 -73131441 - L1MC4a LINE L1 -1485 4661 4538 * 423 231 154 8 chr11 75652052 75652182 -73131290 + MER69 DNA AcHobo 1 149 -2377 2421 143 52 2 chr11 75652188 75652594 -73130878 - MSTB LTR MaLR 0 426 1 1422 307 65 51 chr11 75652796 75653149 -73130323 - L1MC4a LINE L1 -744 5402 5056 1660 108 104 12 chr11 75653149 75653390 -73130082 - AluSg SINE Alu -47 263 1 1422 307 65 51 chr11 75653390 75653890 -73129582 - L1MC4a LINE L1 -1090 5056 4565 1786 134 36 52 chr11 75653890 75654196 -73129276 - AluJo SINE Alu -11 301 1 1422 307 65 51 chr11 75654196 75654217 -73129255 - L1MC4a LINE L1 -1581 4565 4546 2047 134 26 3 chr11 75654217 75654522 -73128950 - AluSx SINE Alu 0 312 1 1422 307 65 51 chr11 75654522 75655221 -73128251 - L1MC4a LINE L1 -1600 4546 4236 2029 139 3 3 chr11 75655221 75655516 -73127956 - AluSx SINE Alu 0 312 18 1422 307 65 51 chr11 75655516 75655894 -73127578 - L1MC4a LINE L1 -1910 4236 3865 191 264 192 0 chr11 75656392 75656517 -73126955 - L2 LINE L2 -215 3057 2909 220 311 67 15 chr11 75657431 75657566 -73125906 - L2 LINE L2 -846 2468 2327 327 49 0 0 chr11 75658495 75658536 -73124936 + (GA)n Simple_repeat Simple_repeat 1 41 0 236 259 71 12 chr11 75659390 75659475 -73123997 - L3 LINE CR1 -67 1510 1421 427 295 0 23 chr11 75659964 75660093 -73123379 + L2 LINE L2 3188 3313 0 246 62 0 0 chr11 75660489 75660521 -73122951 + (TTA)n Simple_repeat Simple_repeat 1 32 0 1998 146 0 0 chr11 75660524 75660805 -73122667 - AluJo SINE Alu -30 282 2 182 296 74 28 chr11 75660842 75660950 -73122522 - MIR3 SINE MIR -84 124 12 279 130 0 0 chr11 75661581 75661635 -73121837 + (CA)n Simple_repeat Simple_repeat 2 55 0 * 339 65 0 0 chr11 75661634 75661680 -73121792 + (TC)n Simple_repeat Simple_repeat 2 47 0 228 305 8 46 chr11 75662077 75662208 -73121264 + CT-rich Low_complexity Low_complexity 5 130 0 248 293 0 0 chr11 75663072 75663130 -73120342 + MIR SINE MIR 204 261 -1 302 277 72 54 chr11 75663829 75663995 -73119477 - L2 LINE L2 -173 3099 2931 330 198 89 10 chr11 75664328 75664429 -73119043 - MIR SINE MIR -79 129 21 571 258 0 8 chr11 75664437 75664565 -73118907 - MER94 DNA DNA -2 132 6 513 261 117 32 chr11 75664697 75664885 -73118587 + MIR SINE MIR 29 232 -30 446 262 157 17 chr11 75665952 75666124 -73117348 + MIR SINE MIR 31 226 -36 2554 66 0 3 chr11 75667636 75667941 -73115531 - AluY SINE Alu -7 304 1 906 136 8 14 chr11 75668033 75668273 -73115199 + AluJo SINE Alu 37 311 -1 419 316 22 6 chr11 75668588 75668765 -73114707 - MIR SINE MIR -52 210 30 288 399 0 0 chr11 75669343 75669511 -73113961 + G-rich Low_complexity Low_complexity 1 168 0 23 33 0 0 chr11 75669557 75669587 -73113885 + GC_rich Low_complexity Low_complexity 1 30 0 235 153 68 34 chr11 75670056 75670115 -73113357 + MIR SINE MIR 85 145 -117 311 336 25 17 chr11 75671221 75671340 -73112132 + MIR SINE MIR 34 153 -55 317 250 129 29 chr11 75671943 75672083 -73111389 - MIR3 SINE MIR -34 174 21 2267 74 42 0 chr11 75672112 75672396 -73111076 - AluY SINE Alu -15 296 1 528 269 76 23 chr11 75672585 75672791 -73110681 - MIR SINE MIR -40 222 6 2488 75 0 0 chr11 75673464 75673758 -73109714 - AluSg SINE Alu -16 294 1 793 241 75 14 chr11 75673794 75674009 -73109463 - MIR SINE MIR -3 259 32 245 313 61 8 chr11 75674314 75674445 -73109027 - MIR SINE MIR -117 145 8 181 267 93 12 chr11 75675118 75675204 -73108268 + MIR SINE MIR 37 129 -79 2622 40 0 49 chr11 75676494 75676819 -73106653 + AluY SINE Alu 1 309 -2 196 294 196 0 chr11 75677597 75677699 -73105773 + MIR SINE MIR 29 150 -58 571 258 176 25 chr11 75678735 75679053 -73104419 - L2 LINE L2 0 3313 2948 298 232 105 11 chr11 75679099 75679194 -73104278 - L2 LINE L2 -510 2804 2701 339 217 43 0 chr11 75679204 75679296 -73104176 - MIR SINE MIR -87 175 80 525 270 57 0 chr11 75679542 75679701 -73103771 + MIR SINE MIR 81 248 -14 586 265 34 78 chr11 75681769 75681973 -73101499 + MER91A DNA MER1_type 1 195 -1 314 244 54 4 chr11 75682343 75682457 -73101015 - MIR SINE MIR -66 142 51 561 239 107 15 chr11 75683763 75683968 -73099504 + L2 LINE L2 2867 3090 -182 1989 133 10 7 chr11 75684074 75684376 -73099096 + AluJb SINE Alu 1 303 -9 242 196 0 36 chr11 75685131 75685187 -73098285 + MIR SINE MIR 87 140 -68 300 222 0 0 chr11 75685510 75685573 -73097899 + MER96B DNA MER1_type? 2 64 -353 1067 157 0 22 chr11 75685573 75685758 -73097714 + AluJb SINE Alu 119 299 -13 673 168 31 41 chr11 75685794 75685990 -73097482 + MER96B DNA MER1_type? 66 259 -158 248 266 25 51 chr11 75686305 75686384 -73097088 + MIR SINE MIR 167 243 -19 1970 109 56 3 chr11 75686385 75686669 -73096803 - AluSx SINE Alu -13 299 1 445 52 0 17 chr11 75686726 75686784 -73096688 + Alu SINE Alu 11 67 -251 304 264 44 0 chr11 75686922 75687013 -73096459 + L2 LINE L2 2966 3060 -212 266 304 51 0 chr11 75687582 75687685 -73095787 + MIR SINE MIR 54 165 -62 2486 68 0 0 chr11 75687767 75688076 -73095396 - AluY SINE Alu -2 309 1 237 247 51 51 chr11 75688754 75688912 -73094560 + (TCTCTG)n Simple_repeat Simple_repeat 6 163 0 1686 204 3 3 chr11 75689647 75689951 -73093521 + AluJo SINE Alu 2 305 -7 209 224 207 0 chr11 75690845 75690903 -73092569 - MIR SINE MIR -87 121 52 492 192 26 64 chr11 75692270 75692434 -73091038 + MIR SINE MIR 45 202 -6 180 316 53 0 chr11 75692436 75692512 -73090960 + L2 LINE L2 2234 2313 -1001 2262 96 3 10 chr11 75692573 75692887 -73090585 - AluSx SINE Alu 0 312 1 417 325 75 15 chr11 75693840 75694143 -73089329 + L2 LINE L2 2845 3160 -112 395 308 107 12 chr11 75694605 75694774 -73088698 - MIR SINE MIR -59 203 19 223 309 231 11 chr11 75694779 75695129 -73088343 - L2 LINE L2 -457 2857 2431 292 289 70 7 chr11 75695221 75695363 -73088109 - L2 LINE L2 -213 3100 2950 442 239 102 51 chr11 75695380 75695577 -73087895 - L2 LINE L2 -526 2788 2582 194 239 0 22 chr11 75695925 75695971 -73087501 - L3 LINE CR1 -6 1571 1527 569 176 65 39 chr11 75696016 75696169 -73087303 + MER58C DNA MER1_type 59 215 0 191 384 0 23 chr11 75696169 75696255 -73087217 - MIR3 SINE MIR -48 160 77 315 323 82 19 chr11 75696552 75696710 -73086762 - MIR SINE MIR -28 234 67 298 265 10 69 chr11 75696708 75696810 -73086662 + L2 LINE L2 3212 3307 -6 * 191 350 78 0 chr11 75697597 75697700 -73085772 - MIR SINE MIR -68 140 30 221 257 14 27 chr11 75698360 75698434 -73085038 + CT-rich Low_complexity Low_complexity 5 77 0 1067 241 215 17 chr11 75700324 75700639 -73082833 + L2 LINE L2 2729 2980 -333 2216 75 21 0 chr11 75700639 75700920 -73082552 - AluSp SINE Alu -26 287 1 1067 241 215 17 chr11 75700920 75701103 -73082369 + L2 LINE L2 2980 3311 -2 215 346 53 8 chr11 75702265 75702398 -73081074 - MIR3 SINE MIR -53 155 17 376 332 48 11 chr11 75702899 75703086 -73080386 + L3 LINE CR1 1384 1577 0 220 229 100 0 chr11 75703287 75703357 -73080115 - L2 LINE L2 -177 3095 3019 1819 127 117 19 chr11 75705242 75705549 -73077923 + MER1B DNA MER1_type 1 337 0 283 230 230 48 chr11 75706955 75707120 -73076352 - L2 LINE L2 -1 3312 3118 285 348 72 27 chr11 75709327 75709548 -73073924 - L3 LINE CR1 -56 1521 1291 905 256 0 5 chr11 75709570 75709793 -73073679 + MER1B DNA MER1_type 47 268 -71 492 168 89 0 chr11 75710670 75710771 -73072701 + MER1B DNA MER1_type 230 339 0 182 404 21 0 chr11 75710924 75711018 -73072454 - L3 LINE CR1 -522 1055 960 333 259 180 0 chr11 75711293 75711432 -73072040 - MIR SINE MIR -52 210 47 1595 154 40 0 chr11 75711878 75712131 -73071341 + AluJb SINE Alu 1 263 -49 418 223 66 58 chr11 75714205 75714274 -73069198 + MER5A DNA MER1_type 1 73 -116 1758 155 54 3 chr11 75714274 75714570 -73068902 + AluJo SINE Alu 2 312 0 418 223 66 58 chr11 75714570 75714621 -73068851 + MER5A DNA MER1_type 73 122 -67 340 310 129 74 chr11 75715257 75715947 -73067525 - L2 LINE L2 -5 3267 2514 223 229 43 29 chr11 75718973 75719043 -73064429 - MIR SINE MIR -77 131 61 531 306 17 0 chr11 75719903 75720076 -73063396 + MIR SINE MIR 52 227 -35 200 345 35 0 chr11 75720149 75720207 -73063265 - L2 LINE L2 -7 3306 3247 223 234 0 16 chr11 75721205 75721289 -73062183 + C-rich Low_complexity Low_complexity 1 82 0 264 167 274 0 chr11 75721758 75721842 -73061630 - MIR SINE MIR -82 126 20 193 286 143 11 chr11 75721976 75722067 -73061405 - MIR SINE MIR -10 252 150 343 294 132 0 chr11 75722893 75723029 -73060443 + MIR3 SINE MIR 48 201 -7 307 349 165 9 chr11 75724359 75724733 -73058739 - L2 LINE L2 -468 2846 2532 1920 68 3 75 chr11 75724733 75725027 -73058445 + AluSg SINE Alu 37 309 -1 307 349 165 9 chr11 75725027 75725348 -73058124 - L2 LINE L2 -782 2532 2042 406 249 127 56 chr11 75725907 75726104 -73057368 - MIR SINE MIR -42 220 10 182 322 60 86 chr11 75726931 75727164 -73056308 + L2 LINE L2 2976 3202 -70 213 346 22 0 chr11 75727792 75727928 -73055544 + CT-rich Low_complexity Low_complexity 2 140 0 * 282 254 16 74 chr11 75727848 75728066 -73055406 + (TCTCTG)n Simple_repeat Simple_repeat 1 205 0 225 159 0 0 chr11 75728073 75728117 -73055355 + CT-rich Low_complexity Low_complexity 2 45 0 195 42 0 0 chr11 75729188 75729212 -73054260 + (TG)n Simple_repeat Simple_repeat 2 25 0 333 302 11 22 chr11 75729480 75729662 -73053810 + (TG)n Simple_repeat Simple_repeat 1 180 0 275 296 11 11 chr11 75730027 75730115 -73053357 - L2 LINE L2 -529 2785 2698 1948 142 0 37 chr11 75730125 75730449 -73053023 + AluSx SINE Alu 1 312 0 186 43 0 0 chr11 75731103 75731126 -73052346 + (TGGGGG)n Simple_repeat Simple_repeat 2 24 0 531 281 211 20 chr11 75731284 75731583 -73051889 - L2 LINE L2 0 3272 2917 270 333 38 31 chr11 75731611 75731770 -73051702 - L3 LINE CR1 -13 1564 1405 181 336 52 47 chr11 75732375 75732607 -73050865 - L2 LINE L2 -223 3049 2817 295 296 88 16 chr11 75733224 75733349 -73050123 + L3b LINE CR1 1317 1450 -133 354 305 71 64 chr11 75733363 75733613 -73049859 + MIR SINE MIR 4 261 -1 445 322 161 0 chr11 75734186 75734391 -73049081 - MIR SINE MIR -24 238 1 841 193 58 0 chr11 75734726 75734897 -73048575 - AluJo SINE Alu -11 301 121 258 337 12 0 chr11 75735075 75735161 -73048311 + L3b LINE CR1 1277 1363 -220 2149 123 0 0 chr11 75735486 75735787 -73047685 - AluSx SINE Alu -11 301 1 296 249 35 19 chr11 75736218 75736331 -73047141 - MIR SINE MIR -62 146 80 200 128 0 26 chr11 75736672 75736711 -73046761 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 304 308 106 45 chr11 75736803 75737001 -73046471 + L3 LINE CR1 1347 1556 -21 2127 129 3 0 chr11 75737505 75737807 -73045665 + AluSp SINE Alu 1 303 -10 2573 52 0 0 chr11 75737938 75738246 -73045226 + AluY SINE Alu 1 308 -3 622 269 121 44 chr11 75738278 75738732 -73044740 - LTR33 LTR ERVL -22 499 11 346 233 33 0 chr11 75738733 75738823 -73044649 - MIR SINE MIR -79 129 37 2318 94 7 0 chr11 75738855 75739164 -73044308 - AluSx SINE Alu -1 311 1 320 340 5 75 chr11 75739450 75739662 -73043810 - L2 LINE L2 -172 3100 2904 331 257 47 74 chr11 75740904 75741052 -73042420 + L2 LINE L2 2918 3061 -211 2097 106 0 0 chr11 75741278 75741588 -73041884 - AluSx SINE Alu 0 310 1 569 314 75 5 chr11 75741910 75742098 -73041374 + MIR SINE MIR 14 214 -48 626 174 77 0 chr11 75742379 75742534 -73040938 - L1ME1 LINE L1 -4 6162 5996 235 306 66 41 chr11 75743226 75743347 -73040125 + L3b LINE CR1 1291 1414 -169 233 171 0 0 chr11 75743350 75743391 -73040081 + L2 LINE L2 3189 3229 -84 493 309 34 22 chr11 75743426 75743604 -73039868 + MIR SINE MIR 29 208 -54 793 147 31 8 chr11 75743619 75743748 -73039724 + FLAM_C SINE Alu 2 133 0 372 273 23 47 chr11 75743767 75743895 -73039577 + L2 LINE L2 3186 3310 -3 871 117 0 36 chr11 75743977 75744114 -73039358 + FLAM_C SINE Alu 1 132 -11 288 226 86 21 chr11 75744501 75744594 -73038878 + MIR SINE MIR 130 228 -34 248 300 0 0 chr11 75745223 75745283 -73038189 + CT-rich Low_complexity Low_complexity 1 60 0 303 198 86 0 chr11 75745751 75745832 -73037640 - MIR SINE MIR -64 144 57 192 358 42 0 chr11 75746063 75746158 -73037314 - MIR SINE MIR -87 121 23 357 280 40 10 chr11 75746328 75746428 -73037044 - MIR SINE MIR -62 146 44 446 290 39 7 chr11 75746903 75747058 -73036414 - MIR3 SINE MIR -45 163 4 282 160 0 0 chr11 75747071 75747121 -73036351 + (CA)n Simple_repeat Simple_repeat 1 50 0 279 282 74 74 chr11 75748195 75748344 -73035128 + MIR3 SINE MIR 40 188 -20 183 350 25 0 chr11 75748651 75748731 -73034741 + MIR SINE MIR 30 111 -97 477 264 132 11 chr11 75749818 75749992 -73033480 + MIR SINE MIR 20 214 -48 841 167 0 0 chr11 75750200 75750332 -73033140 + FLAM_A SINE Alu 1 132 -1 406 333 84 13 chr11 75750907 75751132 -73032340 - MIR SINE MIR -1 261 21 492 18 0 0 chr11 75751677 75751734 -73031738 + (TG)n Simple_repeat Simple_repeat 2 58 0 2235 88 0 7 chr11 75752295 75752591 -73030881 + AluSx SINE Alu 8 301 -11 302 306 0 45 chr11 75752834 75752945 -73030527 + L3 LINE CR1 1372 1477 -100 286 312 73 0 chr11 75753131 75753240 -73030232 - L2 LINE L2 -33 3239 3123 205 312 0 43 chr11 75753298 75753391 -73030081 - L2 LINE L2 0 3313 3225 185 359 120 18 chr11 75753458 75753675 -73029797 - L2 LINE L2 -429 2885 2647 278 307 23 0 chr11 75755246 75755334 -73028138 - MIR SINE MIR -76 132 43 190 308 0 0 chr11 75755713 75755765 -73027707 + L2 LINE L2 3262 3313 0 215 328 136 17 chr11 75755802 75756037 -73027435 - L2 LINE L2 -340 2974 2712 434 313 75 0 chr11 75756098 75756245 -73027227 + MIR SINE MIR 20 177 -85 606 222 99 6 chr11 75756636 75756798 -73026674 + MIR SINE MIR 14 190 -72 206 245 0 0 chr11 75756934 75756983 -73026489 - MER5B DNA MER1_type -4 174 126 * 258 217 60 36 chr11 75756976 75757059 -73026413 + MER5B DNA MER1_type 90 174 -4 460 247 0 0 chr11 75757326 75757419 -73026053 - MIR SINE MIR -65 143 51 2259 85 0 0 chr11 75757556 75757894 -73025578 + AluSc SINE Alu 1 338 0 193 216 162 27 chr11 75758145 75758219 -73025253 - MIR SINE MIR -69 193 110 207 332 87 31 chr11 75758395 75758591 -73024881 - L2 LINE L2 -179 3093 2887 247 291 52 82 chr11 75759138 75759272 -73024200 - MIR3 SINE MIR -73 135 6 204 132 26 0 chr11 75759765 75759803 -73023669 + C-rich Low_complexity Low_complexity 1 39 0 236 51 0 68 chr11 75760089 75760148 -73023324 + (CGGGG)n Simple_repeat Simple_repeat 3 57 0 186 71 0 0 chr11 75760198 75760226 -73023246 + (CGGG)n Simple_repeat Simple_repeat 4 31 0 215 229 37 28 chr11 75761534 75761643 -73021829 + (TG)n Simple_repeat Simple_repeat 2 111 0 213 132 0 0 chr11 75762170 75762208 -73021264 + (TG)n Simple_repeat Simple_repeat 2 39 0 278 259 134 54 chr11 75763931 75764043 -73019429 - L2 LINE L2 0 3313 3193 225 327 77 0 chr11 75764142 75764246 -73019226 + L2 LINE L2 3136 3247 -25 265 345 58 0 chr11 75764343 75764482 -73018990 - MIR3 SINE MIR -39 169 23 257 307 80 31 chr11 75765661 75765824 -73017648 - L2 LINE L2 -497 2817 2647 249 313 70 9 chr11 75766869 75766984 -73016488 + MIR3 SINE MIR 86 207 -1 202 213 16 66 chr11 75768126 75768187 -73015285 - MIR3 SINE MIR -137 71 14 467 266 32 0 chr11 75768540 75768664 -73014808 - MIR3 SINE MIR -16 192 65 261 284 40 0 chr11 75771072 75771146 -73012326 - MIR SINE MIR -85 177 101 345 322 161 8 chr11 75771762 75772029 -73011443 + L2 LINE L2 2454 2761 -553 494 265 185 32 chr11 75772696 75772885 -73010587 - MIR SINE MIR -25 237 20 400 299 8 8 chr11 75773855 75773972 -73009500 + MIR SINE MIR 36 152 -110 2368 74 3 0 chr11 75773983 75774280 -73009192 + AluY SINE Alu 2 299 -12 184 355 13 13 chr11 75774319 75774395 -73009077 + MIR SINE MIR 160 235 -27 640 268 57 107 chr11 75775040 75775462 -73008010 + L2 LINE L2 2870 3270 -2 185 315 46 19 chr11 75778258 75778328 -73005144 - L2 LINE L2 -556 2758 2682 2018 126 38 0 chr11 75778328 75778621 -73004851 + AluSq SINE Alu 1 304 -9 185 315 46 19 chr11 75778621 75778658 -73004814 - L2 LINE L2 -632 2682 2648 1164 320 103 35 chr11 75778683 75779570 -73003902 - L2 LINE L2 -643 2671 1725 4704 155 24 25 chr11 75779739 75780709 -73002763 - L1MB2 LINE L1 0 6171 5203 341 158 18 0 chr11 75780784 75780841 -73002631 - U7 snRNA snRNA -1 62 5 316 270 328 0 chr11 75781434 75781608 -73001864 + MIR SINE MIR 15 245 -17 294 267 43 43 chr11 75782127 75782243 -73001229 + MIR3 SINE MIR 79 194 -14 399 250 69 14 chr11 75782500 75782644 -73000828 + MER91A DNA MER1_type 21 172 -24 264 266 161 8 chr11 75782688 75782812 -73000660 - MIR SINE MIR -70 192 50 222 37 0 0 chr11 75783531 75783558 -72999914 + (TG)n Simple_repeat Simple_repeat 1 27 0 238 262 0 107 chr11 75783851 75783935 -72999537 + MIR3 SINE MIR 93 167 -41 247 331 113 24 chr11 75786109 75786233 -72997239 - L2 LINE L2 -2 3270 3136 197 159 23 0 chr11 75786385 75786429 -72997043 + (TTCA)n Simple_repeat Simple_repeat 2 46 0 281 253 11 32 chr11 75787567 75787662 -72995810 + GA-rich Low_complexity Low_complexity 2 94 0 1067 203 11 0 chr11 75787935 75788122 -72995350 + MER5A DNA MER1_type 1 189 0 185 294 76 0 chr11 75789146 75789238 -72994234 - MIR3 SINE MIR 0 208 110 180 267 89 67 chr11 75789591 75789681 -72993791 - MIR3 SINE MIR -3 205 114 486 197 22 0 chr11 75789857 75789994 -72993478 + (TCCA)n Simple_repeat Simple_repeat 1 140 0 229 194 274 30 chr11 75789996 75790107 -72993365 - MIR3 SINE MIR -1 207 81 393 22 0 0 chr11 75790289 75790335 -72993137 + (TG)n Simple_repeat Simple_repeat 1 46 0 200 250 19 0 chr11 75790744 75790796 -72992676 - L2 LINE L2 -215 3057 3005 462 329 7 7 chr11 75791235 75791375 -72992097 + MIR3 SINE MIR 12 151 -57 726 356 78 48 chr11 75792195 75792847 -72990625 - L3 LINE CR1 -89 1488 817 217 291 0 18 chr11 75793248 75793303 -72990169 - L2 LINE L2 -9 3304 3251 262 368 81 15 chr11 75793345 75793481 -72989991 - MIR SINE MIR -71 191 47 513 300 17 28 chr11 75793552 75793732 -72989740 + MIR3 SINE MIR 31 208 0 195 217 0 22 chr11 75794153 75794199 -72989273 - MIR3 SINE MIR -4 204 160 238 311 0 0 chr11 75794283 75794357 -72989115 + L3b LINE CR1 1342 1415 -168 284 317 12 0 chr11 75794702 75794784 -72988688 - L2 LINE L2 -182 3090 3008 267 256 157 16 chr11 75794906 75795027 -72988445 - MIR3 SINE MIR -68 140 3 334 258 196 53 chr11 75796685 75797022 -72986450 + L2 LINE L2 2886 3270 -2 271 224 47 59 chr11 75797200 75797285 -72986187 - MER5B DNA MER1_type -2 176 93 975 202 54 0 chr11 75797914 75798117 -72985355 + MIR SINE MIR 28 241 -21 378 270 119 8 chr11 75798199 75798325 -72985147 - MIR3 SINE MIR -36 172 33 249 340 153 21 chr11 75798334 75798713 -72984759 + L3 LINE CR1 1147 1575 -2 192 270 40 27 chr11 75799755 75799829 -72983643 + MIR3 SINE MIR 10 84 -124 251 242 85 95 chr11 75799860 75800060 -72983412 + MIR SINE MIR 3 256 -6 185 246 182 27 chr11 75800618 75800728 -72982744 + MIR SINE MIR 18 144 -64 240 296 59 0 chr11 75801464 75801633 -72981839 + (TGGG)n Simple_repeat Simple_repeat 1 179 0 * 343 267 0 44 chr11 75801537 75801717 -72981755 + G-rich Low_complexity Low_complexity 2 173 0 336 271 0 44 chr11 75801800 75801981 -72981491 + G-rich Low_complexity Low_complexity 2 174 0 240 302 6 39 chr11 75802065 75802244 -72981228 + G-rich Low_complexity Low_complexity 2 174 0 224 318 0 34 chr11 75802532 75802711 -72980761 + G-rich Low_complexity Low_complexity 2 174 0 215 298 12 35 chr11 75802855 75803026 -72980446 + G-rich Low_complexity Low_complexity 2 168 0 213 289 50 13 chr11 75802995 75803154 -72980318 + (TGGG)n Simple_repeat Simple_repeat 2 166 0 * 440 264 78 36 chr11 75804210 75804403 -72979069 + L2 LINE L2 2857 3057 -215 201 277 0 0 chr11 75805542 75805589 -72977883 + MIR SINE MIR 80 126 -136 846 247 81 0 chr11 75806017 75806252 -72977220 + MIR SINE MIR 8 261 -1 190 265 88 0 chr11 75806356 75806424 -72977048 - MIR SINE MIR -147 115 42 360 220 136 38 chr11 75806972 75807104 -72976368 + MIR SINE MIR 101 245 -17 249 254 18 35 chr11 75807172 75807286 -72976186 + (TCTCTG)n Simple_repeat Simple_repeat 3 114 0 511 149 234 9 chr11 75807289 75807396 -72976076 + MIR SINE MIR 17 147 -61 315 0 0 0 chr11 75807803 75807838 -72975634 + (TG)n Simple_repeat Simple_repeat 1 35 0 2006 61 8 11 chr11 75807986 75808250 -72975222 + AluY SINE Alu 48 310 -1 359 238 122 41 chr11 75808250 75808397 -72975075 + HAL1 LINE L1 884 1042 -1465 1352 156 0 37 chr11 75808397 75808641 -72974831 + AluJo SINE Alu 78 312 0 337 288 64 16 chr11 75808642 75808767 -72974705 + L1ME2 LINE L1 900 1030 -5089 363 320 50 42 chr11 75808785 75809163 -72974309 + HAL1 LINE L1 1152 1532 -975 2460 284 74 40 chr11 75809212 75809272 -72974200 + L1ME2 LINE L1 2652 2709 -3420 4097 98 0 8 chr11 75809272 75809803 -72973669 + MER1A DNA MER1_type 1 527 0 2460 284 74 40 chr11 75809803 75810430 -72973042 + L1ME2 LINE L1 2709 3313 -2816 2526 44 0 0 chr11 75810430 75810727 -72972745 + AluY SINE Alu 1 297 -14 2460 284 74 40 chr11 75810727 75811871 -72971601 + L1ME2 LINE L1 3313 4546 -1583 1911 187 85 35 chr11 75811875 75812336 -72971136 - LTR2B LTR ERV1 0 490 7 342 326 36 14 chr11 75812340 75812478 -72970994 + L1ME2 LINE L1 4550 4690 -1439 811 122 17 0 chr11 75812518 75812633 -72970839 - AluJb SINE Alu -194 118 2 606 307 119 30 chr11 75812667 75813465 -72970007 + L1ME2 LINE L1 4745 5643 -492 387 341 54 6 chr11 75813523 75813690 -72969782 + L1ME2 LINE L1 5749 5923 -224 238 241 12 18 chr11 75814142 75814312 -72969160 + (TGAA)n Simple_repeat Simple_repeat 3 171 0 209 300 14 0 chr11 75814849 75814919 -72968553 + (GGGTG)n Simple_repeat Simple_repeat 3 73 0 295 221 147 42 chr11 75815117 75815212 -72968260 - MIR SINE MIR -108 154 50 200 146 49 24 chr11 75815467 75815508 -72967964 - MIR SINE MIR -109 153 112 190 262 178 0 chr11 75815530 75815637 -72967835 - MIR3 SINE MIR -21 187 62 2175 79 0 85 chr11 75815791 75815926 -72967546 + AluY SINE Alu 1 146 -165 2319 76 0 0 chr11 75815926 75816228 -72967244 + AluY SINE Alu 1 302 -9 2175 79 0 85 chr11 75816228 75816432 -72967040 + AluY SINE Alu 146 311 0 271 325 48 8 chr11 75816756 75816882 -72966590 + L2 LINE L2 3141 3271 -1 1292 239 32 50 chr11 75816921 75817322 -72966150 - L1MEc LINE L1 -5968 428 35 229 194 0 16 chr11 75817439 75817501 -72965971 - L1ME LINE L1 -367 5803 5743 * 278 236 35 69 chr11 75817473 75817617 -72965855 - L1MEc LINE L1 -4614 1782 1644 30 0 0 0 chr11 75817716 75817746 -72965726 + AT_rich Low_complexity Low_complexity 1 30 0 587 256 20 71 chr11 75817746 75817861 -72965611 - L1MEc LINE L1 -4752 1644 1525 2296 72 3 10 chr11 75817861 75818165 -72965307 - AluY SINE Alu -9 302 1 587 256 20 71 chr11 75818165 75818346 -72965126 - L1MEc LINE L1 -4871 1525 1363 348 354 34 14 chr11 75819971 75820118 -72963354 + L2 LINE L2 3164 3313 0 392 354 0 0 chr11 75820743 75820870 -72962602 + MIR SINE MIR 1 127 -135 5233 103 6 29 chr11 75820870 75820901 -72962571 + L1PB1 LINE L1 5311 5341 -810 2257 86 3 3 chr11 75820901 75821202 -72962270 - AluSg SINE Alu -9 301 1 5233 103 6 29 chr11 75821202 75822007 -72961465 + L1PB1 LINE L1 5341 6128 -23 1318 204 110 43 chr11 75822304 75822741 -72960731 + MLT1C LTR MaLR 1 466 -1 518 254 32 48 chr11 75822895 75823084 -72960388 + LTR16A1 LTR ERVL 206 391 -66 209 292 22 45 chr11 75823242 75823331 -72960141 - L2 LINE L2 -4 3268 3182 322 244 92 42 chr11 75823589 75823708 -72959764 - MER21A LTR ERV1 -336 595 471 529 319 179 26 chr11 75823711 75824163 -72959309 - L2 LINE L2 -441 2873 2353 222 215 154 31 chr11 75824213 75824278 -72959194 - L2 LINE L2 0 3272 3200 462 262 55 28 chr11 75824349 75824494 -72958978 + MER21B LTR ERV1 333 481 -382 1818 134 24 3 chr11 75824638 75824797 -72958675 - AluSx SINE Alu -15 297 128 207 0 0 0 chr11 75824797 75824820 -72958652 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1818 134 24 3 chr11 75824820 75824951 -72958521 - AluSx SINE Alu -184 128 1 1841 149 3 10 chr11 75825099 75825395 -72958077 - AluJb SINE Alu -16 296 3 2405 71 3 0 chr11 75826241 75826549 -72956923 + AluY SINE Alu 1 309 -2 555 262 40 84 chr11 75826597 75826822 -72956650 + MIR SINE MIR 34 248 -14 586 138 0 0 chr11 75826824 75826911 -72956561 + AluJ/FRAM SINE Alu 216 302 -10 666 257 129 91 chr11 75827010 75827200 -72956272 + MLT1L LTR MaLR 12 193 -422 500 248 9 0 chr11 75827200 75827305 -72956167 - MER81 DNA DNA -4 110 5 666 257 129 91 chr11 75827305 75827348 -72956124 + MLT1L LTR MaLR 193 233 -382 393 81 0 0 chr11 75827348 75827410 -72956062 + (TG)n Simple_repeat Simple_repeat 1 62 0 666 257 129 91 chr11 75827410 75827592 -72955880 + MLT1L LTR MaLR 233 448 -167 2263 94 0 0 chr11 75827592 75827899 -72955573 + AluY SINE Alu 1 307 -4 666 257 129 91 chr11 75827899 75827921 -72955551 + MLT1L LTR MaLR 448 468 -147 461 232 181 0 chr11 75828684 75828822 -72954650 - MER103 DNA DNA -3 163 1 334 181 48 12 chr11 75828967 75829050 -72954422 - MER94 DNA DNA -34 100 15 490 279 0 37 chr11 75829360 75829521 -72953951 + L2 LINE L2 3159 3313 0 347 195 28 45 chr11 75830232 75830391 -72953081 - MLT1J LTR MaLR -305 180 36 1829 114 47 34 chr11 75830746 75831043 -72952429 + AluSg SINE Alu 1 301 -9 261 345 40 32 chr11 75831049 75831298 -72952174 - L2 LINE L2 -191 3081 2831 305 196 82 21 chr11 75831553 75831650 -72951822 - MLT1H LTR MaLR -10 539 437 2923 329 83 16 chr11 75831651 75833521 -72949951 + ERVL LTR ERVL 2299 4279 -1206 266 0 29 0 chr11 75833665 75833699 -72949773 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2249 86 0 4 chr11 75833699 75833978 -72949494 - AluSx SINE Alu -34 278 1 1339 338 45 28 chr11 75834322 75835198 -72948274 + ERVL LTR ERVL 4368 5322 -208 934 262 114 7 chr11 75835202 75835492 -72947980 + L1MC/D LINE L1 5412 5732 -2076 24 0 0 0 chr11 75835762 75835786 -72947686 + AT_rich Low_complexity Low_complexity 1 24 0 266 258 39 110 chr11 75835786 75835941 -72947531 - HAL1 LINE L1 -6 2501 2358 2014 184 51 29 chr11 75836034 75836485 -72946987 - LOR1b LTR ERV1 0 461 1 360 296 68 66 chr11 75836673 75837140 -72946332 + MLT1J LTR MaLR 40 507 -4 319 232 116 21 chr11 75837145 75837240 -72946232 + L1MC5 LINE L1 7810 7913 -48 189 0 0 0 chr11 75837458 75837479 -72945993 + (T)n Simple_repeat Simple_repeat 1 21 0 352 247 0 107 chr11 75838083 75838128 -72945344 + LTR16C LTR ERVL 358 406 -85 520 254 0 0 chr11 75838128 75838238 -72945234 - MER81 DNA DNA -4 110 1 352 247 0 107 chr11 75838238 75838342 -72945130 + LTR16C LTR ERVL 406 491 0 1528 156 21 104 chr11 75838670 75838996 -72944476 + AluJo SINE Alu 1 299 -13 2503 69 0 7 chr11 75840219 75840524 -72942948 - AluY SINE Alu -8 303 1 201 211 0 0 chr11 75840873 75840930 -72942542 + CT-rich Low_complexity Low_complexity 3 59 0 216 227 0 45 chr11 75841754 75841820 -72941652 + G-rich Low_complexity Low_complexity 2 64 0 261 0 0 0 chr11 75842259 75842288 -72941184 + (TG)n Simple_repeat Simple_repeat 2 30 0 475 280 0 38 chr11 75843138 75843270 -72940202 - L2 LINE L2 0 3272 3146 364 250 135 0 chr11 75843298 75843394 -72940078 + FLAM_A SINE Alu 25 133 0 252 0 0 0 chr11 75844124 75844152 -72939320 + (TG)n Simple_repeat Simple_repeat 2 29 0 254 310 9 43 chr11 75845290 75845406 -72938066 + MIR3 SINE MIR 6 117 -91 636 209 14 13 chr11 75846095 75846256 -72937216 + MIR SINE MIR 21 180 -62 337 172 23 69 chr11 75846279 75846366 -72937106 + Tigger5 DNA MER2_type 2241 2323 0 22 0 0 0 chr11 75846989 75847011 -72936461 + GC_rich Low_complexity Low_complexity 1 22 0 206 343 14 0 chr11 75850079 75850149 -72933323 - L2 LINE L2 -7 3265 3195 246 350 0 24 chr11 75850192 75850315 -72933157 - L2 LINE L2 -290 2982 2863 439 204 97 0 chr11 75852097 75852200 -72931272 + L2 LINE L2 3133 3245 -27 30 45 0 0 chr11 75852789 75852833 -72930639 + GC_rich Low_complexity Low_complexity 1 44 0 204 310 35 11 chr11 75856134 75856221 -72927251 - MIR SINE MIR -101 107 19 197 277 0 0 chr11 75857102 75857149 -72926323 + L2 LINE L2 3236 3282 -31 490 323 5 21 chr11 75857427 75857619 -72925853 - MIR3 SINE MIR -4 204 16 204 229 33 0 chr11 75857798 75857859 -72925613 + G-rich Low_complexity Low_complexity 2 64 0 2236 115 3 0 chr11 75859347 75859642 -72923830 - AluSx SINE Alu -16 296 1 351 208 127 0 chr11 75860025 75860153 -72923319 + MIR SINE MIR 37 180 -65 211 259 28 37 chr11 75860584 75860692 -72922780 + MIR3 SINE MIR 14 120 -88 361 291 66 35 chr11 75862671 75862980 -72920492 - L2 LINE L2 -255 3017 2638 259 282 126 10 chr11 75863399 75863502 -72919970 - MIR SINE MIR -62 200 86 231 88 0 0 chr11 75863695 75863729 -72919743 + (TG)n Simple_repeat Simple_repeat 1 34 0 1818 109 103 9 chr11 75863934 75864255 -72919217 - MER46B DNA MER2_type 0 236 11 5285 66 16 27 chr11 75864255 75864995 -72918477 + MER4E LTR ERV1 1 733 -33 2240 98 0 10 chr11 75864995 75865292 -72918180 + AluSx SINE Alu 1 294 -18 5285 66 16 27 chr11 75865292 75865326 -72918146 + MER4E LTR ERV1 733 766 0 1948 220 33 107 chr11 75866922 75867480 -72915992 - LTR8 LTR ERV1 -8 683 189 2403 75 0 0 chr11 75867480 75867785 -72915687 - AluY SINE Alu 0 305 1 1948 220 33 107 chr11 75867785 75867957 -72915515 - LTR8 LTR ERV1 -502 189 6 2450 71 0 10 chr11 75868407 75868701 -72914771 + AluY SINE Alu 1 291 -20 242 0 0 2829 chr11 75868723 75868791 -72914681 - L1P LINE L1 -1107 5039 5765 1536 206 124 24 chr11 75868791 75868836 -72914636 - LTR54B LTR ERV1 -1 497 458 2299 124 0 0 chr11 75868836 75869135 -72914337 + AluSx SINE Alu 1 299 -13 1536 206 124 24 chr11 75869135 75869541 -72913931 - LTR54B LTR ERV1 -40 458 1 242 0 0 2829 chr11 75869541 75869773 -72913699 - L1P LINE L1 -380 5766 4742 208 0 62 0 chr11 75870774 75870806 -72912666 + (CAA)n Simple_repeat Simple_repeat 2 35 0 1947 167 0 10 chr11 75870808 75871114 -72912358 + AluJo SINE Alu 1 303 -9 643 286 61 5 chr11 75871997 75872210 -72911262 - MIR SINE MIR -6 256 32 204 313 0 15 chr11 75872245 75872312 -72911160 - L2 LINE L2 -209 3063 2998 3572 121 43 146 chr11 75873159 75873338 -72910134 + LTR1 LTR ERV1 1 197 -588 2282 121 0 0 chr11 75873338 75873644 -72909828 + AluSg SINE Alu 1 306 -4 3572 121 43 146 chr11 75873644 75874339 -72909133 + LTR1 LTR ERV1 197 785 0 2350 99 0 17 chr11 75875297 75875599 -72907873 + AluSx SINE Alu 1 297 -15 1472 135 154 12 chr11 75875798 75876057 -72907415 - AluSg1 SINE Alu -13 296 1 227 266 46 64 chr11 75876791 75876900 -72906572 + MER41E LTR ERV1 342 448 -64 2261 103 0 3 chr11 75877156 75877447 -72906025 - AluSx SINE Alu -22 290 1 2027 154 3 0 chr11 75878244 75878537 -72904935 - AluJb SINE Alu -18 294 1 253 194 15 30 chr11 75878702 75878769 -72904703 - MER5A DNA MER1_type 0 189 124 414 0 0 0 chr11 75879114 75879160 -72904312 + (TG)n Simple_repeat Simple_repeat 1 46 0 4738 138 14 5 chr11 75879307 75880894 -72902578 - L1PA15 LINE L1 -1 6164 4529 1197 225 0 0 chr11 75880894 75881165 -72902307 - L1 LINE L1 -1750 4396 4126 567 295 33 11 chr11 75881275 75881458 -72902014 + MER110A-int LTR ERV1 4461 4647 0 1638 199 71 36 chr11 75881541 75881989 -72901483 + MER110A LTR ERV1 1 464 -4 1910 148 18 6 chr11 75882131 75882463 -72901009 - MER44D DNA MER2_type 0 609 4 271 329 26 46 chr11 75882467 75882619 -72900853 + L1M4b LINE L1 133 281 -6578 * 497 289 25 80 chr11 75882588 75882896 -72900576 + L1M4b LINE L1 674 1199 -5660 2085 230 43 46 chr11 75882948 75883316 -72900156 + L1M4b LINE L1 1038 1406 -5553 2387 75 0 0 chr11 75883316 75883595 -72899877 + AluY SINE Alu 1 279 -32 225 0 0 0 chr11 75883596 75883621 -72899851 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 2085 230 43 46 chr11 75883621 75883857 -72899615 + L1M4b LINE L1 1406 1641 -5318 2303 86 0 38 chr11 75883857 75884170 -72899302 + AluY SINE Alu 1 301 -10 2085 230 43 46 chr11 75884170 75884687 -72898785 + L1M4b LINE L1 1641 2130 -4829 5578 232 23 22 chr11 75884697 75886960 -72896512 + L1PA13 LINE L1 1 2481 -4316 2219 105 3 0 chr11 75886960 75887266 -72896206 - AluY SINE Alu -4 307 1 5578 232 23 22 chr11 75887266 75887318 -72896154 + L1PA13 LINE L1 2481 2531 -4266 2233 180 70 2 chr11 75887318 75887719 -72895753 + MSTA LTR MaLR 1 428 0 9552 174 7 13 chr11 75887719 75887903 -72895569 + MSTB-int LTR MaLR 1 185 -1466 1981 148 51 18 chr11 75887903 75888235 -72895237 + MER61A LTR ERV1 1 343 0 9552 174 7 13 chr11 75888235 75888408 -72895064 + MSTB-int LTR MaLR 185 358 -1293 1558 104 40 5 chr11 75888408 75888630 -72894842 + MER30 DNA MER1_type 1 230 0 9552 174 7 13 chr11 75888630 75889931 -72893541 + MSTB-int LTR MaLR 358 1650 -1 2282 167 38 35 chr11 75889932 75890207 -72893265 + MSTB LTR MaLR 1 279 -147 2323 92 3 0 chr11 75890207 75890511 -72892961 + AluSc SINE Alu 1 305 -4 2282 167 38 35 chr11 75890511 75890660 -72892812 + MSTB LTR MaLR 279 426 0 11535 189 5 87 chr11 75890662 75892604 -72890868 + L1PA13 LINE L1 2529 4630 -2167 327 49 0 0 chr11 75892604 75892645 -72890827 + (TCTCCC)n Simple_repeat Simple_repeat 1 41 0 5345 74 37 60 chr11 75892650 75893716 -72889756 + SVA Other Other 2 868 -555 11535 189 5 87 chr11 75893716 75893729 -72889743 + L1PA13 LINE L1 4634 4646 -2151 6741 62 7 40 chr11 75893729 75894715 -72888757 + SVA Other Other 433 1386 0 11535 189 5 87 chr11 75894715 75895500 -72887972 + L1PA13 LINE L1 4646 5192 -1605 2087 120 30 0 chr11 75895500 75895800 -72887672 + AluSq SINE Alu 1 309 -4 11535 189 5 87 chr11 75895800 75895992 -72887480 + L1PA13 LINE L1 5192 5398 -1399 5051 152 33 31 chr11 75895989 75896029 -72887443 + L1MC1 LINE L1 1548 1586 -4816 * 2049 116 0 20 chr11 75896029 75896399 -72887073 + AluSx SINE Alu 1 312 0 5051 152 33 31 chr11 75896399 75897459 -72886013 + L1MC1 LINE L1 1586 6373 -29 402 287 32 57 chr11 75897520 75897571 -72885901 + L1MEc LINE L1 1812 1863 -4533 2087 122 0 22 chr11 75897571 75897890 -72885582 + AluSx SINE Alu 1 312 0 402 287 32 57 chr11 75897890 75897995 -72885477 + L1MEc LINE L1 1863 1964 -4432 409 281 17 34 chr11 75898005 75898183 -72885289 + L1MEc LINE L1 1731 1905 -4491 828 267 55 27 chr11 75898387 75898605 -72884867 - HAL1 LINE L1 -1042 1465 1254 2324 98 0 0 chr11 75898605 75898911 -72884561 + AluSx SINE Alu 1 306 -6 828 267 55 27 chr11 75898911 75899130 -72884342 - HAL1 LINE L1 -1253 1254 1016 2525 58 0 0 chr11 75899148 75899457 -72884015 - AluY SINE Alu -2 309 1 641 190 16 0 chr11 75899458 75899579 -72883893 - L1MC1 LINE L1 -9 6324 6202 3426 126 10 29 chr11 75899636 75899969 -72883503 - L1MA4 LINE L1 0 6300 5981 2250 101 0 0 chr11 75899969 75900266 -72883206 - AluSc SINE Alu -12 297 1 3426 126 10 29 chr11 75900266 75900513 -72882959 - L1MA4 LINE L1 -319 5981 5731 2250 54 4 0 chr11 75900570 75900848 -72882624 + AluY SINE Alu 29 307 -4 882 161 0 0 chr11 75900850 75900980 -72882492 + FLAM_A SINE Alu 4 133 0 180 229 167 10 chr11 75901185 75901281 -72882191 - L2 LINE L2 -2413 901 791 360 245 139 60 chr11 75901786 75902002 -72881470 + L1ME4a LINE L1 5621 5853 -268 911 177 0 6 chr11 75902495 75902659 -72880813 - FRAM SINE Alu -20 156 1 426 291 12 24 chr11 75902680 75902845 -72880627 - L1M4 LINE L1 -1445 4701 4539 393 295 177 51 chr11 75902848 75902927 -72880545 - L1M4 LINE L1 -1694 4452 4384 2186 107 0 0 chr11 75902927 75903225 -72880247 - AluSc SINE Alu -11 298 1 393 295 177 51 chr11 75903225 75903399 -72880073 - L1M4 LINE L1 -1762 4384 4167 1880 127 35 0 chr11 75903403 75903686 -72879786 - AluSx SINE Alu -19 293 1 730 263 39 15 chr11 75903694 75903899 -72879573 - AluJb SINE Alu -19 293 84 407 308 50 10 chr11 75904691 75904899 -72878573 - MIR SINE MIR -12 250 33 1879 130 58 36 chr11 75905610 75905940 -72877532 + MER1B DNA MER1_type 1 337 0 2319 101 0 0 chr11 75906798 75907105 -72876367 - AluSx SINE Alu -5 307 1 249 33 0 0 chr11 75907871 75907901 -72875571 + (CTCA)n Simple_repeat Simple_repeat 2 31 0 312 330 9 0 chr11 75908162 75908268 -72875204 - L2 LINE L2 -529 2785 2679 300 315 98 46 chr11 75908281 75908358 -72875114 - L2 LINE L2 -741 2573 2501 2296 86 7 3 chr11 75908358 75908662 -72874810 + AluSq SINE Alu 1 305 -8 300 315 98 46 chr11 75908662 75908889 -72874583 - L2 LINE L2 -813 2501 2253 214 259 62 25 chr11 75909880 75909961 -72873511 - MIR SINE MIR -112 150 67 314 329 7 7 chr11 75910416 75910559 -72872913 + (TG)n Simple_repeat Simple_repeat 1 143 0 2144 86 28 7 chr11 75911404 75911695 -72871777 - AluSc SINE Alu -12 297 1 2128 91 7 3 chr11 75911699 75911712 -72871760 - AluSq SINE Alu -16 297 286 213 39 0 0 chr11 75911712 75911738 -72871734 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 2128 91 7 3 chr11 75911738 75912020 -72871452 - AluSq SINE Alu -27 286 1 520 169 138 22 chr11 75912097 75912236 -72871236 - MIR SINE MIR -71 191 38 286 292 81 15 chr11 75912602 75912895 -72870577 + L1MC4 LINE L1 7316 7735 -307 344 283 94 80 chr11 75912895 75912969 -72870503 + L1ME4a LINE L1 5832 5903 -218 1850 142 45 0 chr11 75912969 75913258 -72870214 + AluSx SINE Alu 1 302 -10 344 283 94 80 chr11 75913258 75913407 -72870065 + L1ME4a LINE L1 5903 6062 -59 2444 83 0 0 chr11 75913407 75913720 -72869752 - AluSq SINE Alu 0 313 1 344 283 94 80 chr11 75913720 75913781 -72869691 + L1ME4a LINE L1 6062 6121 0 308 336 129 0 chr11 75913813 75913929 -72869543 - MIR SINE MIR -22 240 110 187 323 228 24 chr11 75914029 75914323 -72869149 - L2 LINE L2 -14 3258 2905 1539 227 35 34 chr11 75914396 75914555 -72868917 + L1MC4 LINE L1 6814 6971 -1071 654 200 0 0 chr11 75914555 75914665 -72868807 - MER81 DNA DNA -4 110 1 1539 227 35 34 chr11 75914665 75915191 -72868281 + L1MC4 LINE L1 6971 7654 -388 459 332 114 0 chr11 75915306 75915499 -72867973 - MIR SINE MIR -36 226 12 2263 97 7 0 chr11 75916480 75916788 -72866684 + AluSp SINE Alu 1 310 -3 546 277 168 5 chr11 75916991 75917183 -72866289 + MIR SINE MIR 25 253 -9 1981 118 7 33 chr11 75917183 75917489 -72865983 + AluSx SINE Alu 1 298 -14 879 71 0 0 chr11 75917498 75917610 -72865862 + HY1 scRNA scRNA 1 112 0 260 301 194 30 chr11 75917749 75918048 -72865424 - L2 LINE L2 -1 3271 2924 344 268 124 21 chr11 75918837 75919008 -72864464 - MIR SINE MIR -55 207 16 343 298 95 13 chr11 75919257 75919415 -72864057 + MIR SINE MIR 55 225 -37 270 302 10 31 chr11 75920285 75920381 -72863091 + L2 LINE L2 3179 3272 0 424 317 21 103 chr11 75920660 75920903 -72862569 + L1ME LINE L1 5385 5607 -514 1285 109 6 0 chr11 75920960 75921134 -72862338 - AluJo SINE Alu -133 179 5 2065 123 3 0 chr11 75921720 75922012 -72861460 - AluSx SINE Alu -19 293 1 188 314 98 52 chr11 75922211 75922405 -72861067 - L2 LINE L2 -213 3059 2857 225 246 115 33 chr11 75922494 75922616 -72860856 - MIR SINE MIR -29 233 102 189 132 0 0 chr11 75924139 75924177 -72859295 + (TCTG)n Simple_repeat Simple_repeat 2 39 0 212 323 187 13 chr11 75924433 75924588 -72858884 + L2 LINE L2 3090 3271 -1 423 289 53 29 chr11 75925246 75925454 -72858018 + L2 LINE L2 3101 3313 0 556 321 137 15 chr11 75926890 75927298 -72856174 + L2 LINE L2 2815 3272 0 227 167 93 0 chr11 75927325 75927379 -72856093 - MIR SINE MIR -72 136 78 241 189 75 0 chr11 75927889 75927942 -72855530 - MIR SINE MIR -74 134 78 332 259 33 23 chr11 75928045 75928180 -72855292 + MIR3 SINE MIR 15 149 -72 286 231 26 13 chr11 75929523 75929601 -72853871 + MIR SINE MIR 67 145 -63 449 247 88 41 chr11 75929692 75929862 -72853610 + MIR SINE MIR 14 191 -71 422 268 20 65 chr11 75930181 75930334 -72853138 + MIR3 SINE MIR 45 190 -18 1592 138 36 8 chr11 75930843 75931096 -72852376 + AluSx SINE Alu 40 299 -13 188 270 32 0 chr11 75932256 75932319 -72851153 + MIR3 SINE MIR 94 158 -50 24 32 0 0 chr11 75933095 75933126 -72850346 + GC_rich Low_complexity Low_complexity 1 31 0 39 106 0 0 chr11 75933162 75933313 -72850159 + GC_rich Low_complexity Low_complexity 1 151 0 222 118 0 0 chr11 75934056 75934090 -72849382 + (CA)n Simple_repeat Simple_repeat 2 35 0 255 250 0 14 chr11 75934238 75934310 -72849162 + MIR SINE MIR 48 118 -90 280 340 30 0 chr11 75934468 75934568 -72848904 + MIR3 SINE MIR 104 206 -2 201 253 66 55 chr11 75934932 75935023 -72848449 + MIR SINE MIR 33 124 -84 470 254 106 7 chr11 75935808 75935950 -72847522 + MIR SINE MIR 48 203 -59 2280 86 13 0 chr11 75936778 75937082 -72846390 + AluSx SINE Alu 1 308 -4 1793 175 0 0 chr11 75937564 75937872 -72845600 + AluJb SINE Alu 1 308 -4 1795 151 0 49 chr11 75938280 75938605 -72844867 + AluJo SINE Alu 1 309 -3 327 233 105 12 chr11 75938605 75938691 -72844781 - MIR SINE MIR -131 131 38 270 125 54 0 chr11 75940010 75940066 -72843406 + MER53 DNA DNA 94 152 -37 2095 101 21 0 chr11 75940069 75940355 -72843117 - AluSg SINE Alu -18 292 1 1672 166 35 3 chr11 75940357 75940641 -72842831 - AluJo SINE Alu -19 293 1 435 268 65 0 chr11 75940641 75940764 -72842708 + MIR SINE MIR 120 250 -12 384 324 41 0 chr11 75941765 75941910 -72841562 + MIR3 SINE MIR 9 159 -49 404 238 28 171 chr11 75942488 75942740 -72840732 - MIR SINE MIR 0 262 47 2202 95 10 3 chr11 75942917 75943213 -72840259 + AluSq SINE Alu 1 298 -15 1116 103 0 6 chr11 75943348 75943536 -72839936 - AluSp SINE Alu 0 313 134 2114 103 3 19 chr11 75943536 75943847 -72839625 - AluSx SINE Alu -6 306 1 282 309 64 9 chr11 75944619 75944729 -72838743 + MIR SINE MIR 38 153 -55 288 289 104 17 chr11 75944756 75944978 -72838494 - MIR3 SINE MIR 0 262 15 3318 164 19 53 chr11 75945865 75945902 -72837570 + LTR51 LTR ERV1 1 38 -633 533 168 267 0 chr11 75945902 75946033 -72837439 - FRAM SINE Alu 0 166 1 3318 164 19 53 chr11 75946033 75946574 -72836898 + LTR51 LTR ERV1 38 554 -117 2413 62 0 3 chr11 75946574 75946878 -72836594 + AluY SINE Alu 1 303 -8 3318 164 19 53 chr11 75946878 75946993 -72836479 + LTR51 LTR ERV1 554 671 0 1169 91 5 16 chr11 75947139 75947325 -72836147 - AluY SINE Alu -1 310 127 182 138 0 0 chr11 75947957 75947986 -72835486 + MIR SINE MIR 33 61 -147 1621 144 3 26 chr11 75948559 75948864 -72834608 + AluSq SINE Alu 1 298 -15 2257 76 0 3 chr11 75948999 75949320 -72834152 - AluSq SINE Alu 0 313 1 308 336 129 0 chr11 75949413 75949529 -72833943 - MIR SINE MIR -22 240 110 1539 227 35 34 chr11 75949996 75950155 -72833317 + L1MC4 LINE L1 6814 6971 -1071 654 200 0 0 chr11 75950155 75950265 -72833207 - MER81 DNA DNA -4 110 1 1539 227 35 34 chr11 75950265 75950791 -72832681 + L1MC4 LINE L1 6971 7654 -388 459 332 114 0 chr11 75950906 75951099 -72832373 - MIR SINE MIR -36 226 12 2250 101 7 0 chr11 75952080 75952388 -72831084 + AluSp SINE Alu 1 310 -3 546 277 168 5 chr11 75952591 75952783 -72830689 + MIR SINE MIR 25 253 -9 1981 118 7 33 chr11 75952783 75953089 -72830383 + AluSx SINE Alu 1 298 -14 879 71 0 0 chr11 75953098 75953210 -72830262 + HY1 scRNA scRNA 1 112 0 268 320 177 17 chr11 75953349 75953649 -72829823 - L2 LINE L2 -1 3271 2924 344 268 124 21 chr11 75954439 75954610 -72828862 - MIR SINE MIR -55 207 16 328 304 95 13 chr11 75954859 75955017 -72828455 + MIR SINE MIR 55 225 -37 270 302 10 31 chr11 75955887 75955983 -72827489 + L2 LINE L2 3179 3272 0 424 317 21 103 chr11 75956262 75956505 -72826967 + L1ME LINE L1 5385 5607 -514 1285 109 6 0 chr11 75956562 75956736 -72826736 - AluJo SINE Alu -133 179 5 2065 123 3 0 chr11 75957322 75957614 -72825858 - AluSx SINE Alu -19 293 1 188 314 98 52 chr11 75957813 75958007 -72825465 - L2 LINE L2 -213 3059 2857 225 246 115 33 chr11 75958096 75958218 -72825254 - MIR SINE MIR -29 233 102 189 132 0 0 chr11 75959740 75959778 -72823694 + (TCTG)n Simple_repeat Simple_repeat 2 39 0 212 356 102 60 chr11 75959905 75960189 -72823283 + L2 LINE L2 2976 3271 -1 423 289 53 29 chr11 75960847 75961055 -72822417 + L2 LINE L2 3101 3313 0 556 321 137 15 chr11 75962491 75962899 -72820573 + L2 LINE L2 2815 3272 0 227 167 93 0 chr11 75962926 75962980 -72820492 - MIR SINE MIR -72 136 78 241 189 75 0 chr11 75963490 75963543 -72819929 - MIR SINE MIR -74 134 78 332 259 33 23 chr11 75963646 75963781 -72819691 + MIR3 SINE MIR 15 149 -72 286 231 26 13 chr11 75965124 75965202 -72818270 + MIR SINE MIR 67 145 -63 449 247 88 41 chr11 75965293 75965463 -72818009 + MIR SINE MIR 14 191 -71 422 268 20 65 chr11 75965782 75965935 -72817537 + MIR3 SINE MIR 45 190 -18 1592 138 36 8 chr11 75966444 75966697 -72816775 + AluSx SINE Alu 40 299 -13 183 42 0 0 chr11 75968105 75968129 -72815343 + (A)n Simple_repeat Simple_repeat 1 24 0 930 120 8 0 chr11 75968211 75968344 -72815128 - AluJb SINE Alu -178 134 1 1242 213 40 7 chr11 75968696 75968816 -72814656 + AluJb SINE Alu 1 116 -206 194 0 39 0 chr11 75968816 75968842 -72814630 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1242 213 40 7 chr11 75968842 75969034 -72814438 + AluJb SINE Alu 116 322 0 867 205 0 0 chr11 75969035 75969201 -72814271 + AluJb SINE Alu 136 301 -11 2307 76 0 16 chr11 75969201 75969516 -72813956 + AluSg SINE Alu 1 310 0 490 299 56 39 chr11 75969590 75969834 -72813638 - L1MC/D LINE L1 -483 5638 5492 1999 153 45 6 chr11 75969834 75970167 -72813305 - MER7A DNA MER2_type -1 345 2 490 299 56 39 chr11 75970167 75970365 -72813107 - L1MC/D LINE L1 -629 5492 5299 2266 89 3 10 chr11 75970404 75970717 -72812755 - AluSx SINE Alu -1 311 1 2223 119 0 0 chr11 75970725 75971037 -72812435 - AluSx SINE Alu 0 312 1 1727 159 38 45 chr11 75971081 75971134 -72812338 - L1MB4 LINE L1 -7 6164 6112 1739 182 0 3 chr11 75971134 75971431 -72812041 - AluJb SINE Alu -16 296 1 1727 159 38 45 chr11 75971431 75971578 -72811894 - L1MB4 LINE L1 -59 6112 5965 2336 83 0 13 chr11 75971578 75971891 -72811581 - AluSg SINE Alu -1 309 1 1905 157 3 0 chr11 75971891 75972203 -72811269 - AluSq SINE Alu 0 313 1 1727 159 38 45 chr11 75972203 75972445 -72811027 - L1MB4 LINE L1 -204 5967 5688 2382 107 30 37 chr11 75972457 75972665 -72810807 - MSTB1 LTR MaLR -32 400 195 2115 92 0 54 chr11 75972665 75972981 -72810491 - AluSx SINE Alu -13 299 1 2382 107 30 37 chr11 75972981 75973175 -72810297 - MSTB1 LTR MaLR -237 195 1 1757 172 14 25 chr11 75973178 75973532 -72809940 - L1MB4 LINE L1 -491 5689 5340 2001 125 0 3 chr11 75973532 75973828 -72809644 - AluSx SINE Alu -17 295 1 897 202 48 0 chr11 75973856 75974024 -72809448 + FRAM SINE Alu 1 173 -3 1878 148 3 0 chr11 75974066 75974356 -72809116 - AluJb SINE Alu -18 294 4 271 194 223 0 chr11 75974488 75974591 -72808881 + MLT1J2 LTR MaLR 32 157 -293 341 121 0 0 chr11 75974736 75974794 -72808678 + MLT1I LTR MaLR 310 367 -42 972 231 116 72 chr11 75974809 75974834 -72808638 + MLT1H1 LTR MaLR 1 23 -532 2257 97 6 13 chr11 75974834 75975145 -72808327 - AluSx SINE Alu -3 309 1 972 231 116 72 chr11 75975145 75975552 -72807920 + MLT1H1 LTR MaLR 23 452 -103 2050 104 3 35 chr11 75975586 75975902 -72807570 + AluSx SINE Alu 2 307 -5 2034 119 3 0 chr11 75976034 75976327 -72807145 - AluSx SINE Alu -18 294 1 634 304 118 34 chr11 75976418 75976961 -72806511 - L2 LINE L2 -18 3295 2711 2110 104 7 3 chr11 75976961 75977259 -72806213 - AluSx SINE Alu -13 299 1 634 304 118 34 chr11 75977259 75977294 -72806178 - L2 LINE L2 -602 2711 2680 2184 97 7 7 chr11 75977317 75977625 -72805847 - AluSg SINE Alu -2 308 1 1755 167 3 22 chr11 75977665 75977807 -72805665 + AluJo SINE Alu 1 144 -168 1940 117 14 4 chr11 75977807 75978119 -72805353 + AluSx SINE Alu 1 315 0 1755 167 3 22 chr11 75978119 75978286 -72805186 + AluJo SINE Alu 144 305 -7 261 98 0 0 chr11 75978425 75978466 -72805006 + (A)n Simple_repeat Simple_repeat 1 41 0 2225 52 0 24 chr11 75978484 75978800 -72804672 - AluY SINE Alu 0 309 1 275 194 242 16 chr11 75978830 75978909 -72804563 - MIR SINE MIR -10 252 192 1897 154 17 56 chr11 75978909 75979266 -72804206 - MER2 DNA MER2_type -1 343 1 275 194 242 16 chr11 75979266 75979310 -72804162 - MIR SINE MIR -70 192 101 21 36 0 0 chr11 75979892 75979920 -72803552 + AT_rich Low_complexity Low_complexity 1 28 0 213 204 0 61 chr11 75980327 75980376 -72803096 + MIR SINE MIR 53 98 -164 2109 106 6 10 chr11 75980386 75980697 -72802775 - AluSg SINE Alu 0 310 1 1472 187 10 26 chr11 75980740 75980881 -72802591 + AluJo SINE Alu 1 143 -169 1919 113 14 7 chr11 75980881 75981194 -72802278 + AluSx SINE Alu 1 315 0 1472 187 10 26 chr11 75981194 75981361 -72802111 + AluJo SINE Alu 143 305 -7 281 304 93 12 chr11 75982824 75982985 -72800487 + L2 LINE L2 2871 3044 -228 199 288 106 0 chr11 75984658 75984747 -72798725 + MIR SINE MIR 77 145 -63 2068 74 0 11 chr11 75985045 75985351 -72798121 - AluY SINE Alu 0 303 1 219 261 14 43 chr11 75985356 75985425 -72798047 - MIR SINE MIR -64 144 78 216 86 0 0 chr11 75986017 75986052 -72797420 + (TGG)n Simple_repeat Simple_repeat 2 36 0 2118 85 53 3 chr11 75986308 75986590 -72796882 - AluSc SINE Alu -13 296 1 223 340 52 46 chr11 75987327 75987521 -72795951 + L2 LINE L2 1966 2160 -1154 180 253 394 0 chr11 75987652 75987751 -72795721 - MIR SINE MIR -18 244 107 234 315 222 0 chr11 75987797 75987905 -72795567 - L2 LINE L2 -1 3312 3181 2539 75 0 0 chr11 75988808 75989116 -72794356 - AluY SINE Alu -3 308 1 630 200 55 0 chr11 75989179 75989324 -72794148 - L1MD3 LINE L1 -7 7988 7836 664 206 120 11 chr11 75989328 75989503 -72793969 - L1MD2 LINE L1 -215 6144 5951 390 246 127 8 chr11 75990211 75990337 -72793135 + MIR SINE MIR 78 218 -44 1711 144 65 4 chr11 75991447 75991724 -72791748 - AluJb SINE Alu -18 294 1 244 318 59 0 chr11 75993606 75993691 -72789781 - MIR SINE MIR -79 129 40 191 138 0 0 chr11 75996256 75996285 -72787187 + MIR SINE MIR 33 61 -147 2157 95 29 13 chr11 75996858 75997164 -72786308 + AluSx SINE Alu 1 311 -1 194 171 270 36 chr11 75998352 75998463 -72785009 - MIR SINE MIR -78 184 48 200 194 0 0 chr11 75998659 75998695 -72784777 + (TTGGGG)n Simple_repeat Simple_repeat 5 40 0 482 245 11 0 chr11 75999741 75999835 -72783637 - FRAM SINE Alu -81 95 1 815 151 0 0 chr11 76000011 76000130 -72783342 - FLAM_A SINE Alu -14 119 1 198 234 21 0 chr11 76000368 76000415 -72783057 + L2 LINE L2 3225 3272 0 2104 129 7 0 chr11 76000426 76000720 -72782752 + AluSq SINE Alu 1 296 -17 291 293 122 0 chr11 76000926 76001049 -72782423 - MIR SINE MIR -17 245 108 260 221 195 0 chr11 76001898 76001975 -72781497 - MIR SINE MIR -81 127 36 239 246 93 34 chr11 76002004 76002122 -72781350 + MIR SINE MIR 17 141 -67 338 289 71 42 chr11 76002539 76002729 -72780743 - MIR3 SINE MIR -34 174 15 2327 88 3 7 chr11 76002840 76003134 -72780338 + AluSx SINE Alu 1 293 -19 2326 100 0 7 chr11 76003787 76004086 -72779386 - AluSx SINE Alu -15 297 1 246 187 22 44 chr11 76004568 76004659 -72778813 + (AGGTG)n Simple_repeat Simple_repeat 4 92 0 283 221 274 0 chr11 76004713 76004808 -72778664 - MIR SINE MIR -113 149 29 445 286 23 8 chr11 76004808 76004941 -72778531 + L1MC/D LINE L1 5526 5660 -2148 2379 97 3 0 chr11 76004949 76005249 -72778223 - AluSp SINE Alu -12 301 1 184 367 82 20 chr11 76005718 76005816 -72777656 + L2 LINE L2 3169 3272 0 971 335 105 50 chr11 76008417 76009205 -72774267 - L2 LINE L2 -454 2860 2029 452 349 38 0 chr11 76009213 76009448 -72774024 + L2 LINE L2 2544 2787 -527 235 111 0 0 chr11 76009448 76009484 -72773988 + L2 LINE L2 3277 3312 -1 1572 144 12 121 chr11 76010227 76010567 -72772905 + AluJb SINE Alu 6 308 -4 1323 131 53 5 chr11 76012992 76013027 -72770445 + AluJo SINE Alu 87 119 -193 285 29 0 0 chr11 76013027 76013061 -72770411 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 1323 131 53 5 chr11 76013061 76013231 -72770241 + AluJo SINE Alu 119 302 -10 218 222 22 0 chr11 76013231 76013276 -72770196 + MIR SINE MIR 22 67 -141 2124 125 0 52 chr11 76014342 76014671 -72768801 + AluSx SINE Alu 1 312 0 187 317 212 27 chr11 76014705 76014964 -72768508 + L2 LINE L2 2671 2977 -337 608 171 21 50 chr11 76015063 76015203 -72768269 + L2 LINE L2 3175 3310 -3 187 250 0 0 chr11 76015199 76015247 -72768225 + MIR SINE MIR 139 186 -76 * 405 58 0 0 chr11 76015250 76015302 -72768170 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 2381 95 0 3 chr11 76015376 76015682 -72767790 - AluSg SINE Alu -5 305 1 276 102 82 0 chr11 76015955 76016004 -72767468 - L1ME4a LINE L1 -2 6119 6067 405 273 80 62 chr11 76016006 76016182 -72767290 - L1ME4a LINE L1 -196 5925 5747 1863 174 0 16 chr11 76016195 76016500 -72766972 - AluJb SINE Alu -12 300 1 469 239 85 40 chr11 76016585 76016761 -72766711 - L2 LINE L2 -4 3309 3126 286 197 123 49 chr11 76016763 76016885 -72766587 - L1ME4a LINE L1 -401 5720 5590 2314 110 3 0 chr11 76016893 76017194 -72766278 - AluSx SINE Alu -10 302 1 289 354 125 15 chr11 76017386 76017852 -72765620 + L2 LINE L2 2751 3270 -2 806 269 84 42 chr11 76018428 76018807 -72764665 - L2 LINE L2 0 3313 2919 2304 108 3 7 chr11 76019260 76019566 -72763906 - AluSq SINE Alu -8 305 1 2171 69 87 0 chr11 76019577 76019854 -72763618 - AluY SINE Alu -10 301 1 1824 131 3 55 chr11 76020007 76020319 -72763153 + AluSx SINE Alu 1 296 -16 752 176 0 0 chr11 76020419 76020544 -72762928 - AluSp SINE Alu -57 256 132 1147 273 52 20 chr11 76020560 76021154 -72762318 - L1MEc LINE L1 -5124 1272 660 2096 100 0 14 chr11 76021248 76021559 -72761913 - AluSx SINE Alu 0 315 9 775 268 78 19 chr11 76021693 76022067 -72761405 - L1MC4 LINE L1 -922 6886 6563 977 227 0 0 chr11 76022087 76022259 -72761213 - FAM SINE Alu -3 172 1 1672 178 51 0 chr11 76022391 76022667 -72760805 - AluJb SINE Alu -22 290 1 23 33 0 0 chr11 76022884 76022914 -72760558 + AT_rich Low_complexity Low_complexity 1 30 0 1201 118 0 75 chr11 76023204 76023416 -72760056 + AluJb SINE Alu 100 295 -17 1635 239 52 8 chr11 76023416 76023934 -72759538 + L1MB8 LINE L1 2325 2865 -3281 1577 174 29 35 chr11 76024043 76024354 -72759118 - AluJo SINE Alu -3 309 1 328 269 120 43 chr11 76024413 76024647 -72758825 - MLT1H LTR MaLR -201 348 97 1167 201 136 30 chr11 76024754 76025018 -72758454 + AluJo SINE Alu 1 292 -10 1896 162 7 10 chr11 76025901 76026198 -72757274 + AluJo SINE Alu 1 296 -16 3583 187 42 23 chr11 76026207 76026259 -72757213 + L1MB8 LINE L1 4910 4960 -1218 2165 165 16 5 chr11 76026259 76026628 -72756844 - MER93b LTR ERV1 0 373 1 3583 187 42 23 chr11 76026628 76027047 -72756425 + L1MB8 LINE L1 4960 5369 -809 2310 101 0 3 chr11 76027047 76027343 -72756129 - AluSg SINE Alu -15 295 1 3583 187 42 23 chr11 76027343 76028083 -72755389 + L1MB8 LINE L1 5369 6144 -34 255 61 0 0 chr11 76028086 76028119 -72755353 + (A)n Simple_repeat Simple_repeat 1 33 0 279 203 54 0 chr11 76028279 76028353 -72755119 + L1MB2 LINE L1 6087 6164 -7 21 0 0 0 chr11 76028381 76028402 -72755070 + AT_rich Low_complexity Low_complexity 1 21 0 755 196 0 8 chr11 76028500 76028633 -72754839 + FLAM_C SINE Alu 2 133 0 776 155 0 31 chr11 76028660 76028789 -72754683 - FAM SINE Alu -56 129 5 2622 59 0 0 chr11 76029466 76029771 -72753701 - AluY SINE Alu -6 305 1 28 0 0 0 chr11 76029830 76029858 -72753614 + AT_rich Low_complexity Low_complexity 1 28 0 274 343 143 35 chr11 76030195 76030597 -72752875 - L2 LINE L2 -212 3060 2618 823 103 0 0 chr11 76030739 76030846 -72752626 + U6 snRNA snRNA 1 107 0 213 159 0 0 chr11 76030909 76030953 -72752519 + CT-rich Low_complexity Low_complexity 1 44 0 1955 119 7 13 chr11 76031196 76031498 -72751974 + AluSx SINE Alu 11 310 -2 4759 109 17 35 chr11 76031525 76031606 -72751866 + L1PA13 LINE L1 5381 5462 -701 1919 151 0 45 chr11 76031606 76031918 -72751554 - AluJb SINE Alu -14 298 1 4759 109 17 35 chr11 76031918 76032145 -72751327 + L1PA13 LINE L1 5462 5692 -471 1497 151 143 0 chr11 76032145 76032403 -72751069 + AluSp SINE Alu 1 295 -18 4759 109 17 35 chr11 76032403 76032871 -72750601 + L1PA13 LINE L1 5692 6144 -19 2715 179 33 18 chr11 76032893 76033154 -72750318 + L1MB3 LINE L1 4810 5066 -1117 1826 103 4 4 chr11 76033154 76033396 -72750076 - AluSx SINE Alu -22 290 49 2715 179 33 18 chr11 76033396 76034097 -72749375 + L1MB3 LINE L1 5066 5788 -395 233 27 0 54 chr11 76034110 76034147 -72749325 + L1MB3 LINE L1 5773 5807 -364 1051 162 0 0 chr11 76034176 76034330 -72749142 - FRAM SINE Alu -27 149 1 1677 116 83 69 chr11 76034330 76034585 -72748887 + L1MB3 LINE L1 5807 6070 -113 2400 81 0 14 chr11 76034585 76034721 -72748751 + AluSx SINE Alu 1 137 -175 2301 90 3 13 chr11 76034721 76035056 -72748416 + AluSp SINE Alu 1 313 0 2400 81 0 14 chr11 76035056 76035215 -72748257 + AluSx SINE Alu 137 292 -20 1677 116 83 69 chr11 76035215 76035321 -72748151 + L1MB3 LINE L1 6070 6173 -10 439 130 0 0 chr11 76036169 76036246 -72747226 + L1MA5 LINE L1 6224 6300 0 21 0 0 0 chr11 76036281 76036302 -72747170 + AT_rich Low_complexity Low_complexity 1 21 0 2263 89 0 38 chr11 76037165 76037480 -72745992 - AluSq SINE Alu -10 303 1 703 319 55 4 chr11 76037601 76037836 -72745636 + MIR SINE MIR 16 262 0 3822 69 8 0 chr11 76038002 76038512 -72744960 + L1PA13 LINE L1 5647 6160 -3 1897 251 40 15 chr11 76038539 76038846 -72744626 + L1ME LINE L1 36 365 -6031 3075 165 15 4 chr11 76038846 76039385 -72744087 + MER44D DNA MER2_type 2 601 -4 1897 251 40 15 chr11 76039385 76039623 -72743849 + L1ME LINE L1 365 595 -5801 1922 132 0 35 chr11 76039644 76039962 -72743510 - MER1B DNA MER1_type 0 339 33 8265 208 80 21 chr11 76039979 76040293 -72743179 + L1ME LINE L1 2672 2966 -3269 1557 160 101 0 chr11 76040293 76040561 -72742911 + AluSx SINE Alu 1 295 -17 8265 208 80 21 chr11 76040561 76041378 -72742094 + L1ME LINE L1 2966 3733 -2502 2292 106 0 3 chr11 76041378 76041680 -72741792 + AluSp SINE Alu 1 301 -12 8265 208 80 21 chr11 76041680 76042662 -72740810 + L1ME LINE L1 3733 4656 -1579 1433 194 27 31 chr11 76042662 76042955 -72740517 - AluJo SINE Alu -20 292 1 8265 208 80 21 chr11 76042955 76043695 -72739777 + L1ME LINE L1 4656 5693 -542 1688 143 65 4 chr11 76044007 76044286 -72739186 + AluJb SINE Alu 1 296 -16 306 74 56 0 chr11 76044289 76044343 -72739129 + L1MA8 LINE L1 6235 6291 0 213 388 92 0 chr11 76045598 76045696 -72737776 + L2 LINE L2 3092 3198 -74 2202 116 0 0 chr11 76045985 76046298 -72737174 - AluSq SINE Alu 0 313 1 385 241 184 29 chr11 76046694 76046901 -72736571 - L2 LINE L2 0 3313 3075 195 352 22 22 chr11 76046937 76047028 -72736444 + MIR3 SINE MIR 72 162 -46 209 293 17 17 chr11 76047033 76047091 -72736381 + MIR3 SINE MIR 15 72 -136 3042 82 17 46 chr11 76047793 76048270 -72735202 + L1PA11 LINE L1 5709 6171 -3 867 192 0 0 chr11 76048270 76048416 -72735056 + AluSg/x SINE Alu 134 279 -33 294 50 0 0 chr11 76048419 76048459 -72735013 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 2376 100 0 10 chr11 76048626 76048935 -72734537 - AluSx SINE Alu -6 306 1 203 303 0 15 chr11 76049102 76049168 -72734304 + GA-rich Low_complexity Low_complexity 6 70 0 195 114 0 0 chr11 76049171 76049206 -72734266 + (GA)n Simple_repeat Simple_repeat 2 36 0 809 103 0 0 chr11 76049272 76049379 -72734093 - U6 snRNA snRNA 0 107 1 261 340 140 35 chr11 76049521 76049935 -72733537 + L2 LINE L2 2618 3072 -200 28 0 0 0 chr11 76050260 76050288 -72733184 + AT_rich Low_complexity Low_complexity 1 28 0 2584 59 0 0 chr11 76050347 76050653 -72732819 + AluY SINE Alu 1 306 -5 753 155 0 31 chr11 76051330 76051459 -72732013 + FAM SINE Alu 5 129 -56 734 196 0 8 chr11 76051486 76051619 -72731853 - FLAM_C SINE Alu 0 133 2 21 0 0 0 chr11 76051717 76051738 -72731734 + AT_rich Low_complexity Low_complexity 1 21 0 264 169 62 0 chr11 76051766 76051831 -72731641 - L1MB2 LINE L1 -7 6164 6096 255 61 0 0 chr11 76052000 76052033 -72731439 + (T)n Simple_repeat Simple_repeat 1 33 0 3515 186 42 23 chr11 76052036 76052776 -72730696 - L1MB8 LINE L1 -34 6144 5420 2240 105 0 3 chr11 76052776 76053072 -72730400 + AluSg SINE Alu 1 295 -15 3515 186 42 23 chr11 76053072 76053491 -72729981 - L1MB8 LINE L1 -758 5420 4960 2116 165 16 5 chr11 76053491 76053860 -72729612 + MER93b LTR ERV1 1 373 0 3515 186 42 23 chr11 76053860 76053912 -72729560 - L1MB8 LINE L1 -1218 4960 4910 1863 155 7 17 chr11 76053921 76054218 -72729254 - AluJo SINE Alu -18 294 1 972 216 134 31 chr11 76055111 76055365 -72728107 - AluJo SINE Alu -32 280 1 320 264 119 47 chr11 76055472 76055707 -72727765 + MLT1H LTR MaLR 97 348 -201 1547 174 29 35 chr11 76055766 76056077 -72727395 + AluJo SINE Alu 1 309 -3 1590 239 52 8 chr11 76056186 76056704 -72726768 - L1MB8 LINE L1 -3281 2865 2325 1193 113 0 75 chr11 76056704 76056916 -72726556 - AluJb SINE Alu -17 295 100 23 33 0 0 chr11 76057206 76057236 -72726236 + AT_rich Low_complexity Low_complexity 1 30 0 1646 178 51 0 chr11 76057453 76057729 -72725743 + AluJb SINE Alu 1 290 -22 953 227 0 0 chr11 76057861 76058033 -72725439 + FAM SINE Alu 1 172 -3 793 262 29 37 chr11 76058053 76058427 -72725045 + L1MC4a LINE L1 6563 6884 -924 2066 100 0 14 chr11 76058561 76058872 -72724600 + AluSx SINE Alu 9 315 0 1090 263 54 22 chr11 76058966 76059560 -72723912 + L1MEc LINE L1 660 1272 -5124 1160 136 0 0 chr11 76059581 76059750 -72723722 + AluSp SINE Alu 137 305 -8 193 89 44 0 chr11 76059797 76059842 -72723630 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 2290 129 214 2 chr11 76059852 76060362 -72723110 + L1MA4 LINE L1 4413 5030 -1116 760 121 4 6 chr11 76060362 76060633 -72722839 + AluJ SINE Alu 1 319 0 4320 130 23 16 chr11 76060636 76061582 -72721890 + L1MA4 LINE L1 5016 5968 -335 2284 65 7 14 chr11 76061588 76061880 -72721592 + AluY SINE Alu 1 290 -21 407 97 0 9 chr11 76061889 76062096 -72721376 + AluSg SINE Alu 1 291 -20 1546 151 79 3 chr11 76062096 76062413 -72721059 + L1MA4 LINE L1 5955 6295 -5 2177 210 106 44 chr11 76062441 76063378 -72720094 + L1ME LINE L1 4494 5485 -681 1785 123 3 35 chr11 76063378 76063688 -72719784 + AluJb SINE Alu 1 300 -12 438 289 75 5 chr11 76063760 76063947 -72719525 + L1MC4 LINE L1 7296 7495 -547 300 134 25 51 chr11 76064213 76064370 -72719102 + (TA)n Simple_repeat Simple_repeat 2 154 0 1371 201 49 8 chr11 76064370 76064633 -72718839 - AluJb SINE Alu -38 274 1 681 323 49 41 chr11 76065809 76066153 -72717319 - L3 LINE CR1 -10 1567 1221 240 209 0 0 chr11 76066815 76066901 -72716571 + (TA)n Simple_repeat Simple_repeat 2 87 0 181 216 0 59 chr11 76067041 76067092 -72716380 + L2 LINE L2 3224 3271 -1 21 36 0 0 chr11 76067418 76067446 -72716026 + AT_rich Low_complexity Low_complexity 1 28 0 283 214 33 14 chr11 76067521 76067681 -72715791 + MLT1G LTR MaLR 375 590 0 823 352 61 17 chr11 76067682 76068256 -72715216 - L2 LINE L2 -974 2340 1742 1779 173 3 10 chr11 76068346 76068659 -72714813 - AluJb SINE Alu -1 311 1 2441 56 7 23 chr11 76068693 76068998 -72714474 - AluY SINE Alu -11 300 1 1378 177 0 17 chr11 76069227 76069464 -72714008 + AluJo SINE Alu 63 295 -17 353 307 66 15 chr11 76070185 76070322 -72713150 + MIR3 SINE MIR 64 207 -1 394 318 154 0 chr11 76070375 76070570 -72712902 - MIR SINE MIR -32 230 6 23 0 0 0 chr11 76070630 76070653 -72712819 + AT_rich Low_complexity Low_complexity 1 23 0 1209 191 4 60 chr11 76070717 76070968 -72712504 - AluJb SINE Alu -75 237 1 21 0 0 0 chr11 76071033 76071054 -72712418 + AT_rich Low_complexity Low_complexity 1 21 0 354 227 93 70 chr11 76071409 76071581 -72711891 + MIR SINE MIR 23 198 -64 2327 94 0 7 chr11 76072330 76072639 -72710833 - AluSc SINE Alu -2 307 1 2030 133 0 19 chr11 76072729 76073038 -72710434 - AluSx SINE Alu -9 303 1 1756 162 10 24 chr11 76073056 76073353 -72710119 - AluJb SINE Alu -19 293 1 595 112 0 0 chr11 76073412 76073501 -72709971 + AluSg/x SINE Alu 207 295 -15 1278 179 143 0 chr11 76074001 76074253 -72709219 + AluJo SINE Alu 1 288 -24 1112 208 54 39 chr11 76074416 76074748 -72708724 + MER46C DNA MER2_type 1 337 -1 264 59 0 0 chr11 76076503 76076537 -72706935 + (A)n Simple_repeat Simple_repeat 1 34 0 2227 52 0 28 chr11 76076555 76076873 -72706599 - AluY SINE Alu 0 310 1 225 0 0 0 chr11 76077006 76077031 -72706441 + (A)n Simple_repeat Simple_repeat 1 25 0 1978 150 3 0 chr11 76077076 76077369 -72706103 + AluJb SINE Alu 1 294 -18 24 0 0 0 chr11 76077375 76077399 -72706073 + AT_rich Low_complexity Low_complexity 1 24 0 1671 156 35 93 chr11 76077450 76077531 -72705941 + MER65A LTR ERV1 40 124 -321 2000 126 50 30 chr11 76077531 76077833 -72705639 + AluSq SINE Alu 1 308 -5 2333 109 0 0 chr11 76077841 76078153 -72705319 + AluSx SINE Alu 1 312 0 1671 156 35 93 chr11 76078153 76078493 -72704979 + MER65A LTR ERV1 131 445 0 2138 120 3 10 chr11 76078619 76078920 -72704552 + AluSx SINE Alu 2 300 -12 243 309 266 10 chr11 76079609 76079816 -72703656 - L2 LINE L2 -940 2374 2115 1799 181 83 12 chr11 76079822 76080221 -72703251 - LTR65 LTR ERV1 0 669 237 2291 116 6 3 chr11 76080221 76080532 -72702940 - AluSx SINE Alu 0 312 1 1799 181 83 12 chr11 76080532 76080553 -72702919 - LTR65 LTR ERV1 -432 237 219 2101 113 0 27 chr11 76080564 76080865 -72702607 - AluSx SINE Alu -19 293 1 596 189 30 15 chr11 76080879 76081011 -72702461 - MER4C LTR ERV1 0 465 332 1254 160 24 136 chr11 76081017 76081157 -72702315 + AluJb SINE Alu 1 84 -218 1974 105 3 54 chr11 76081157 76081295 -72702177 + AluSx SINE Alu 3 147 -165 2113 103 7 20 chr11 76081295 76081595 -72701877 + AluSg SINE Alu 1 296 -14 1974 105 3 54 chr11 76081595 76081769 -72701703 + AluSx SINE Alu 147 299 -13 1254 160 24 136 chr11 76081769 76081960 -72701512 + AluJb SINE Alu 84 295 -7 1755 66 0 33 chr11 76081963 76082205 -72701267 + AluY SINE Alu 1 234 -77 863 241 103 30 chr11 76082753 76083218 -72700254 - L1MC5 LINE L1 -48 7913 7415 469 208 20 30 chr11 76083381 76083482 -72699990 + MLT1D LTR MaLR 1 100 -405 * 472 246 37 8 chr11 76083475 76083609 -72699863 - MLT1B LTR MaLR -89 301 164 1072 100 0 0 chr11 76083623 76083783 -72699689 - L1MA3 LINE L1 -1 6304 6145 8931 53 12 0 chr11 76083783 76085692 -72697780 - L1PA6 LINE L1 -1 6153 4223 2187 114 3 3 chr11 76086536 76086842 -72696630 - AluSx SINE Alu -6 306 1 1424 123 5 19 chr11 76086946 76087158 -72696314 - AluSc SINE Alu -100 209 1 350 325 60 24 chr11 76087206 76087372 -72696100 - L2 LINE L2 0 3272 3101 1461 166 15 19 chr11 76090605 76090870 -72692602 + MLT2C1 LTR ERVL 134 397 0 203 277 21 99 chr11 76091056 76091197 -72692275 + L2 LINE L2 2302 2431 -883 184 347 128 19 chr11 76091269 76091690 -72691782 + L2 LINE L2 2354 2820 -494 21 0 0 0 chr11 76092033 76092054 -72691418 + AT_rich Low_complexity Low_complexity 1 21 0 2107 122 0 20 chr11 76092511 76092838 -72690634 - AluSx SINE Alu 0 312 1 238 271 0 0 chr11 76093170 76093218 -72690254 - LTR16C LTR ERVL -39 452 405 4533 119 91 75 chr11 76093324 76094225 -72689247 + pTR5 LTR ERV1 1524 2438 0 2138 136 0 0 chr11 76094351 76094645 -72688827 + AluSx SINE Alu 1 294 -18 22 35 0 0 chr11 76095360 76095389 -72688083 + AT_rich Low_complexity Low_complexity 1 29 0 1527 187 8 0 chr11 76095819 76096070 -72687402 - AluJo SINE Alu -59 253 1 1740 130 40 87 chr11 76096168 76096490 -72686982 - AluSx SINE Alu -5 307 1 945 63 0 0 chr11 76096682 76096793 -72686679 - AluY SINE Alu -196 115 5 22 0 0 0 chr11 76096894 76096916 -72686556 + AT_rich Low_complexity Low_complexity 1 22 0 991 168 0 13 chr11 76097584 76097739 -72685733 + FRAM SINE Alu 1 145 -31 186 43 0 0 chr11 76097742 76097765 -72685707 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5228 125 221 29 chr11 76097933 76099005 -72684467 + MER52C LTR ERV1 1 1278 0 712 180 116 47 chr11 76099426 76099472 -72684000 - MER5A DNA MER1_type -5 184 143 2031 134 29 10 chr11 76099472 76099786 -72683686 + L1MC1 LINE L1 6014 6333 0 712 180 116 47 chr11 76099786 76099911 -72683561 - MER5A DNA MER1_type -46 143 1 402 164 43 78 chr11 76100317 76100433 -72683039 + L1MC5 LINE L1 7820 7931 -30 223 322 106 76 chr11 76100468 76100704 -72682768 + L2 LINE L2 2735 2977 -337 5203 25 0 0 chr11 76100939 76101506 -72681966 - L1PA4 LINE L1 -3 6152 5586 2129 137 191 3 chr11 76102288 76102676 -72680796 + MER65C LTR ERV1 1 461 0 1870 147 31 0 chr11 76102684 76102977 -72680495 + AluSx SINE Alu 1 302 -10 59 0 0 27 chr11 76102999 76103014 -72680458 + AT_rich Low_complexity Low_complexity 1 15 -57 2136 61 57 34 chr11 76103014 76103311 -72680161 + L1MA1 LINE L1 5998 6301 -1 1851 152 3 39 chr11 76103311 76103621 -72679851 - AluSx SINE Alu -13 299 1 59 0 0 27 chr11 76103621 76103678 -72679794 + AT_rich Low_complexity Low_complexity 13 72 0 2210 119 0 0 chr11 76103699 76103993 -72679479 + AluSg SINE Alu 1 294 -16 634 345 88 28 chr11 76104307 76104805 -72678667 + L2 LINE L2 2444 2971 -343 395 299 64 21 chr11 76104888 76105075 -72678397 + L2 LINE L2 3117 3311 -2 444 209 0 11 chr11 76105685 76105776 -72677696 + MLT1K LTR MaLR 495 584 -4 2073 163 0 0 chr11 76106043 76106350 -72677122 + AluJb SINE Alu 2 308 -4 2174 120 0 10 chr11 76106527 76106828 -72676644 - AluSx SINE Alu -14 298 1 233 313 12 12 chr11 76108254 76108337 -72675135 + MIR SINE MIR 53 135 -127 210 294 198 16 chr11 76108452 76108578 -72674894 + MIR SINE MIR 28 176 -86 856 152 0 36 chr11 76108687 76108825 -72674647 + FLAM_C SINE Alu 1 133 0 1853 196 25 2 chr11 76108834 76109227 -72674245 - L1M4 LINE L1 -5106 1436 1035 636 98 0 0 chr11 76109754 76109836 -72673636 - AluY SINE Alu -227 83 2 200 271 0 0 chr11 76109838 76109886 -72673586 - L2 LINE L2 -15 3298 3251 937 69 0 0 chr11 76110371 76110487 -72672985 - AluSp/q SINE Alu -6 307 192 2309 110 3 0 chr11 76111804 76112112 -72671360 - AluSx SINE Alu -3 309 1 24 53 0 0 chr11 76113353 76113391 -72670081 + AT_rich Low_complexity Low_complexity 1 38 0 240 231 187 22 chr11 76113397 76113488 -72669984 + L2 LINE L2 3167 3272 0 49 43 0 0 chr11 76113560 76113630 -72669842 + AT_rich Low_complexity Low_complexity 1 70 0 505 252 141 78 chr11 76113776 76114215 -72669257 + L1ME4a LINE L1 5378 5851 -270 2506 167 34 5 chr11 76114215 76114629 -72668843 + MSTB LTR MaLR 1 426 0 505 252 141 78 chr11 76114629 76114666 -72668806 + L1ME4a LINE L1 5851 5884 -237 237 237 167 39 chr11 76114699 76114855 -72668617 + L1ME4a LINE L1 5946 6121 0 250 200 0 0 chr11 76114938 76114983 -72668489 - L1M4 LINE L1 -705 5479 5435 809 176 29 0 chr11 76114983 76115119 -72668353 - AluJo/FRAM SINE Alu -19 293 154 336 133 0 0 chr11 76115122 76115167 -72668305 - Alu SINE Alu -256 46 2 2112 122 0 3 chr11 76115193 76115487 -72667985 - AluSq SINE Alu -20 293 1 22 0 0 0 chr11 76115853 76115875 -72667597 + AT_rich Low_complexity Low_complexity 1 22 0 252 299 117 0 chr11 76115875 76115952 -72667520 + L2 LINE L2 3222 3307 -6 16072 31 6 0 chr11 76116180 76118751 -72664721 + L1PA4 LINE L1 3576 6153 -2 180 0 0 0 chr11 76118898 76118918 -72664554 + (A)n Simple_repeat Simple_repeat 1 20 0 346 236 101 11 chr11 76118920 76119009 -72664463 - MIR SINE MIR -128 134 38 304 125 54 0 chr11 76120328 76120384 -72663088 + MER53 DNA DNA 94 152 -37 2182 101 21 0 chr11 76120387 76120673 -72662799 - AluSg SINE Alu -18 292 1 1752 155 35 11 chr11 76120675 76120959 -72662513 - AluJo SINE Alu -21 291 1 419 268 65 0 chr11 76120959 76121082 -72662390 + MIR SINE MIR 120 250 -12 364 310 48 7 chr11 76122083 76122228 -72661244 + MIR3 SINE MIR 9 159 -49 375 226 32 175 chr11 76122807 76123059 -72660413 - MIR SINE MIR 0 262 47 2289 95 9 16 chr11 76123236 76123551 -72659921 + AluSq SINE Alu 1 313 0 591 234 21 0 chr11 76123551 76123696 -72659776 + L1MB4 LINE L1 5924 6071 -109 1798 175 0 10 chr11 76123696 76123993 -72659479 + AluJb SINE Alu 1 294 -18 256 151 0 19 chr11 76123993 76124046 -72659426 + L1MB3 LINE L1 6125 6176 -7 2299 119 0 0 chr11 76124090 76124402 -72659070 + AluSx SINE Alu 1 312 0 2352 89 3 10 chr11 76124410 76124723 -72658749 + AluSx SINE Alu 1 311 -1 547 266 54 45 chr11 76124884 76124960 -72658512 + L1ME LINE L1 5415 5489 -632 2059 150 45 6 chr11 76124960 76125293 -72658179 + MER7A DNA MER2_type 2 345 -1 547 266 54 45 chr11 76125293 76125438 -72658034 + L1ME LINE L1 5489 5638 -483 2427 76 0 13 chr11 76125613 76125927 -72657545 - AluSg SINE Alu 0 310 1 878 193 0 12 chr11 76125927 76126093 -72657379 - AluJb SINE Alu -13 299 136 396 0 0 0 chr11 76126094 76126138 -72657334 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 1297 217 40 4 chr11 76126138 76126289 -72657183 - AluJb SINE Alu -30 282 115 194 0 39 0 chr11 76126289 76126315 -72657157 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1297 217 40 4 chr11 76126315 76126435 -72657037 - AluJb SINE Alu -197 115 1 965 120 8 0 chr11 76126787 76126920 -72656552 + AluJb SINE Alu 1 134 -178 192 40 0 0 chr11 76127002 76127027 -72656445 + (T)n Simple_repeat Simple_repeat 1 25 0 1666 167 0 20 chr11 76127312 76127605 -72655867 + AluJo SINE Alu 1 287 -25 1605 153 30 33 chr11 76128495 76128627 -72654845 + AluJo SINE Alu 1 132 -180 2799 23 0 0 chr11 76128627 76128935 -72654537 + AluYa5 SINE Alu 1 308 -3 1605 153 30 33 chr11 76128935 76129103 -72654369 + AluJo SINE Alu 132 300 -12 22 35 0 0 chr11 76129176 76129205 -72654267 + AT_rich Low_complexity Low_complexity 1 29 0 34 89 0 0 chr11 76130731 76130821 -72652651 + AT_rich Low_complexity Low_complexity 1 90 0 2467 73 0 0 chr11 76131820 76132122 -72651350 - AluY SINE Alu -9 302 1 354 324 46 50 chr11 76132544 76132763 -72650709 + L2 LINE L2 2186 2403 -911 182 167 0 71 chr11 76135724 76135766 -72647706 - MIR SINE MIR -3 259 221 22544 28 2 15 chr11 76135969 76139544 -72643928 + L1PA4 LINE L1 2641 6163 0 183 192 48 115 chr11 76139634 76139738 -72643734 - L3 LINE CR1 -188 1389 1293 366 268 127 14 chr11 76139927 76139998 -72643474 - MIR SINE MIR -34 228 166 291 114 0 0 chr11 76139998 76140042 -72643430 + (TAG)n Simple_repeat Simple_repeat 3 46 0 366 268 127 14 chr11 76140042 76140112 -72643360 - MIR SINE MIR -96 166 71 1705 63 0 5 chr11 76140192 76140399 -72643073 + AluY SINE Alu 96 301 -10 1655 160 63 19 chr11 76140438 76140800 -72642672 - L1MB7 LINE L1 -9 6175 5798 1939 147 0 22 chr11 76141033 76141345 -72642127 + AluJb SINE Alu 1 305 -7 21 0 0 0 chr11 76141599 76141620 -72641852 + AT_rich Low_complexity Low_complexity 1 21 0 249 252 191 28 chr11 76141794 76141939 -72641533 + MIR SINE MIR 30 190 -64 453 332 107 63 chr11 76142322 76143313 -72640159 + L1MEc LINE L1 42 1057 -5148 1877 161 27 0 chr11 76143313 76143605 -72639867 - AluJb SINE Alu -12 300 1 453 332 107 63 chr11 76143605 76143759 -72639713 + L1MEc LINE L1 1057 1203 -5002 283 253 0 0 chr11 76143783 76143866 -72639606 + L1MEc LINE L1 1958 2040 -4356 2111 119 3 7 chr11 76143870 76144164 -72639308 + AluSx SINE Alu 1 293 -19 317 300 50 8 chr11 76144205 76144325 -72639147 + L1MEc LINE L1 2016 2140 -4256 918 181 21 21 chr11 76144331 76144519 -72638953 + L1M3 LINE L1 5392 5579 -604 731 259 92 15 chr11 76144545 76144807 -72638665 + MLT1K LTR MaLR 300 581 -7 2464 98 0 0 chr11 76144925 76145232 -72638240 - AluSx SINE Alu -5 307 1 327 25 0 0 chr11 76145479 76145519 -72637953 + (CA)n Simple_repeat Simple_repeat 2 41 0 280 300 20 30 chr11 76147102 76147202 -72636270 - MIR SINE MIR -110 152 54 30 45 0 0 chr11 76148175 76148219 -72635253 + AT_rich Low_complexity Low_complexity 1 44 0 485 313 58 116 chr11 76148271 76148632 -72634840 + L2 LINE L2 2933 3272 0 270 308 87 93 chr11 76148759 76148931 -72634541 + MIR SINE MIR 20 190 -72 2613 11 0 0 chr11 76149101 76149382 -72634090 - AluYa5 SINE Alu -14 297 17 2119 112 3 10 chr11 76149443 76149748 -72633724 + AluSx SINE Alu 7 309 -3 459 331 50 0 chr11 76149785 76149945 -72633527 - MIR SINE MIR -27 235 68 * 942 295 13 13 chr11 76149943 76150255 -72633217 + L2 LINE L2 786 1097 -2217 339 255 181 13 chr11 76150460 76150609 -72632863 - MIR SINE MIR 0 262 89 2205 141 0 0 chr11 76151764 76152076 -72631396 - AluSx SINE Alu 0 312 1 331 294 14 14 chr11 76152228 76152371 -72631101 - L1ME LINE L1 -458 5663 5521 2094 115 0 10 chr11 76152430 76152735 -72630737 - AluY SINE Alu -8 303 2 3528 172 78 53 chr11 76152794 76152938 -72630534 - L1MB5 LINE L1 0 6174 6035 2347 98 0 6 chr11 76152938 76153253 -72630219 + AluSq SINE Alu 1 313 0 3528 172 78 53 chr11 76153253 76154411 -72629061 - L1MB5 LINE L1 -139 6035 4839 473 244 58 49 chr11 76154585 76154790 -72628682 + MLT1J2 LTR MaLR 21 227 -223 223 200 120 0 chr11 76155224 76155274 -72628198 + MIR SINE MIR 197 252 -10 2259 119 0 0 chr11 76156098 76156393 -72627079 - AluSx SINE Alu -17 295 1 235 179 0 0 chr11 76156503 76156542 -72626930 - L2 LINE L2 -12 3301 3263 1263 299 175 16 chr11 76157321 76157965 -72625507 - L2 LINE L2 -6 3307 2500 2020 133 13 13 chr11 76157965 76158274 -72625198 - AluJo SINE Alu -3 309 1 1263 299 175 16 chr11 76158274 76158451 -72625021 - L2 LINE L2 -813 2500 2352 450 274 15 49 chr11 76158494 76158698 -72624774 + L1MC4 LINE L1 6471 6667 -1375 3275 195 96 11 chr11 76158719 76159461 -72624011 - MER21B LTR ERV1 -16 847 43 387 227 0 0 chr11 76159461 76159536 -72623936 - MER21B LTR ERV1 -771 92 18 345 149 0 81 chr11 76159569 76159643 -72623829 - MER21B LTR ERV1 -795 68 1 2178 205 112 7 chr11 76159643 76160198 -72623274 + L1MC4 LINE L1 6686 7298 -744 1364 158 132 3 chr11 76160201 76160557 -72622915 - MLT1A1 LTR MaLR 0 365 1 1619 227 99 87 chr11 76160559 76160802 -72622670 + L1MC4 LINE L1 7304 7542 -500 3729 16 0 0 chr11 76160802 76161228 -72622244 - L1PA2 LINE L1 -1 6154 5729 1619 227 99 87 chr11 76161228 76161712 -72621760 + L1MC4 LINE L1 7542 8040 -2 1935 151 3 0 chr11 76162004 76162318 -72621154 + AluSx SINE Alu 1 315 0 297 0 0 0 chr11 76162762 76162795 -72620677 + (TG)n Simple_repeat Simple_repeat 2 34 0 2565 48 0 19 chr11 76162989 76163302 -72620170 - AluY SINE Alu -4 307 1 330 26 0 0 chr11 76163621 76163660 -72619812 + (TG)n Simple_repeat Simple_repeat 1 39 0 1874 187 133 0 chr11 76163780 76164155 -72619317 - MSTB LTR MaLR -1 425 1 390 344 75 0 chr11 76164249 76164409 -72619063 - MER117 DNA MER1_type -23 174 3 1805 157 27 14 chr11 76165001 76165173 -72618299 - AluJo SINE Alu -14 298 119 261 0 0 0 chr11 76165173 76165202 -72618270 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1805 157 27 14 chr11 76165202 76165323 -72618149 - AluJo SINE Alu -193 119 1 1041 202 34 17 chr11 76165882 76166120 -72617352 + Charlie1 DNA MER1_type 1 242 -2519 768 127 8 0 chr11 76166108 76166242 -72617230 + Charlie1 DNA MER1_type 2627 2761 0 * 326 314 50 63 chr11 76166405 76166644 -72616828 + L3 LINE CR1 215 450 -1127 918 204 88 22 chr11 76166669 76166895 -72616577 + MIR SINE MIR 1 241 -21 327 227 40 13 chr11 76166918 76166993 -72616479 + L2 LINE L2 3222 3298 -15 646 307 33 29 chr11 76167044 76167288 -72616184 - MIR SINE MIR -12 250 6 570 296 81 56 chr11 76167298 76167328 -72616144 + L3 LINE CR1 479 507 -1070 2164 135 6 3 chr11 76167328 76167661 -72615811 - MER1B DNA MER1_type 0 337 4 570 296 81 56 chr11 76167661 76168025 -72615447 + L3 LINE CR1 507 883 -694 447 361 115 21 chr11 76168071 76168359 -72615113 + L2 LINE L2 2932 3246 -26 279 321 134 53 chr11 76168458 76168556 -72614916 + L2 LINE L2 2612 2701 -613 2459 70 0 0 chr11 76168556 76168854 -72614618 - AluY SINE Alu -13 298 1 279 321 134 53 chr11 76168854 76169017 -72614455 + L2 LINE L2 2701 2894 -420 220 315 79 11 chr11 76169116 76169205 -72614267 - L2 LINE L2 -40 3273 3179 851 242 129 7 chr11 76169343 76169637 -72613835 - L1ME3 LINE L1 -5 6165 5834 301 315 0 11 chr11 76169638 76169727 -72613745 + L1ME1 LINE L1 5782 5869 -301 2123 117 7 0 chr11 76169933 76170223 -72613249 - AluSx SINE Alu -18 294 3 348 348 51 60 chr11 76170405 76170682 -72612790 - L2 LINE L2 -36 3277 2999 2567 43 0 7 chr11 76170682 76170982 -72612490 + AluY SINE Alu 1 298 -13 348 348 51 60 chr11 76170982 76171095 -72612377 - L2 LINE L2 -314 2999 2887 2219 159 30 24 chr11 76171095 76171560 -72611912 + L1MB7 LINE L1 5717 6184 0 348 348 51 60 chr11 76171560 76171574 -72611898 - L2 LINE L2 -426 2887 2874 2452 70 0 3 chr11 76171574 76171874 -72611598 + AluY SINE Alu 1 299 -12 348 348 51 60 chr11 76171874 76171974 -72611498 - L2 LINE L2 -439 2874 2728 505 289 112 29 chr11 76174620 76174935 -72608537 + MLT1G1 LTR MaLR 167 595 0 309 217 84 7 chr11 76174935 76175078 -72608394 + L1ME3A LINE L1 4305 4458 -1688 296 179 179 24 chr11 76175112 76175196 -72608276 + MLT1E2 LTR MaLR 55 151 -503 * 1985 207 95 4 chr11 76175191 76175654 -72607818 + MLT1E2 LTR MaLR 122 626 0 283 259 37 62 chr11 76175654 76175816 -72607656 + L1ME1 LINE L1 6005 6162 -4 490 239 46 73 chr11 76176730 76176869 -72606603 + L1ME3A LINE L1 5632 5762 -408 2433 84 7 0 chr11 76176869 76177179 -72606293 + AluSp SINE Alu 1 312 -1 490 239 46 73 chr11 76177179 76177299 -72606173 + L1ME3A LINE L1 5762 5884 -286 641 207 251 0 chr11 76177546 76177725 -72605747 + MER58A DNA MER1_type 1 224 0 2114 203 8 5 chr11 76177879 76178273 -72605199 - MSTD LTR MaLR -1 395 1 814 194 0 0 chr11 76178302 76178457 -72605015 + MER3 DNA MER1_type 5 159 -50 1611 109 62 0 chr11 76178852 76179108 -72604364 - L1MA6 LINE L1 -397 5903 5632 1813 144 15 15 chr11 76179123 76179437 -72604035 + L1MA4 LINE L1 5957 6289 -11 1765 164 44 10 chr11 76180069 76180362 -72603110 - AluJo SINE Alu -9 303 1 3038 152 19 61 chr11 76180394 76180711 -72602761 + L1M1 LINE L1 4700 5029 -1250 2215 109 7 0 chr11 76180711 76181004 -72602468 - AluSg SINE Alu -15 295 1 3038 152 19 61 chr11 76181004 76181312 -72602160 + L1M1 LINE L1 5029 5348 -931 5608 45 19 62 chr11 76181312 76182105 -72601367 + L1PA5 LINE L1 5396 6154 0 3038 152 19 61 chr11 76182105 76182300 -72601172 + L1M1 LINE L1 5348 5480 -799 1728 144 53 53 chr11 76182300 76182633 -72600839 + THE1C LTR MaLR 1 336 -39 2254 111 3 7 chr11 76182633 76182940 -72600532 - AluSx SINE Alu -6 306 1 1728 144 53 53 chr11 76182940 76182981 -72600491 + THE1C LTR MaLR 335 375 0 3038 152 19 61 chr11 76182981 76183036 -72600436 + L1M1 LINE L1 5480 5536 -743 449 204 127 18 chr11 76183013 76183234 -72600238 + HAL1 LINE L1 1046 1290 -1217 * 861 270 112 27 chr11 76183247 76183658 -72599814 + HAL1 LINE L1 1430 1875 -632 507 354 159 32 chr11 76183770 76184299 -72599173 - L2 LINE L2 -1723 1591 996 213 175 0 0 chr11 76184426 76184466 -72599006 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 324 276 0 11 chr11 76184466 76184553 -72598919 + L1MC4 LINE L1 6614 6699 -1343 246 336 80 26 chr11 76184558 76184671 -72598801 + L2 LINE L2 3141 3259 -13 762 198 35 6 chr11 76185501 76185673 -72597799 + L2 LINE L2 2005 2181 -1133 946 206 6 0 chr11 76185688 76185863 -72597609 - FRAM SINE Alu 0 176 1 187 244 22 0 chr11 76185863 76185908 -72597564 + L2 LINE L2 2165 2210 -1104 1448 243 61 51 chr11 76185910 76185961 -72597511 + L2 LINE L2 2189 2238 -1076 1539 201 16 20 chr11 76185961 76186265 -72597207 - AluJo SINE Alu -9 303 1 1448 243 61 51 chr11 76186265 76186706 -72596766 + L2 LINE L2 2238 2686 -628 538 253 74 50 chr11 76186723 76186925 -72596547 + L2 LINE L2 3101 3307 -6 180 327 18 18 chr11 76186936 76186991 -72596481 - MIR SINE MIR -188 74 20 266 229 124 7 chr11 76187090 76187243 -72596229 + MER113 DNA MER1_type? 19 189 -332 1457 201 76 7 chr11 76187397 76187686 -72595786 + AluJo SINE Alu 1 309 -3 203 132 0 53 chr11 76187692 76187730 -72595742 + (GAAAA)n Simple_repeat Simple_repeat 4 39 0 1141 209 11 36 chr11 76187741 76188019 -72595453 + L1MD2 LINE L1 6075 6345 -14 1969 137 27 0 chr11 76188121 76188413 -72595059 + AluSx SINE Alu 1 300 -12 192 389 56 12 chr11 76188647 76188809 -72594663 - L2 LINE L2 -452 2862 2694 23 0 0 0 chr11 76188954 76188977 -72594495 + AT_rich Low_complexity Low_complexity 1 23 0 2101 127 3 3 chr11 76189272 76189564 -72593908 + AluSx SINE Alu 1 292 -20 21 0 0 0 chr11 76189574 76189595 -72593877 + AT_rich Low_complexity Low_complexity 1 21 0 10996 188 87 10 chr11 76189606 76192027 -72591445 - L1M2 LINE L1 -4261 2588 2 559 259 72 32 chr11 76192033 76192311 -72591161 + L1MC4a LINE L1 5588 5876 -1932 325 289 56 35 chr11 76192664 76192806 -72590666 + L2 LINE L2 2367 2511 -803 216 298 0 0 chr11 76192787 76192844 -72590628 - L2 LINE L2 0 3313 3257 * 451 265 111 6 chr11 76193622 76193784 -72589688 + MIR SINE MIR 78 256 -6 487 177 0 0 chr11 76193892 76193971 -72589501 - AluJ/FLAM SINE Alu -233 79 1 1991 134 14 3 chr11 76194179 76194471 -72589001 - AluJo SINE Alu -1 311 17 2259 112 0 0 chr11 76194906 76195202 -72588270 - AluSx SINE Alu -16 296 1 25 0 0 0 chr11 76195612 76195637 -72587835 + AT_rich Low_complexity Low_complexity 1 25 0 22 56 0 0 chr11 76195948 76195984 -72587488 + AT_rich Low_complexity Low_complexity 1 36 0 2172 139 0 0 chr11 76196080 76196382 -72587090 + AluSx SINE Alu 1 302 -10 216 111 0 0 chr11 76196383 76196419 -72587053 + (CCAA)n Simple_repeat Simple_repeat 4 39 0 1567 177 18 4 chr11 76197017 76197338 -72586134 - AluJb SINE Alu 0 325 1 664 211 223 53 chr11 76197962 76198267 -72585205 - L1MC5 LINE L1 -808 7153 6765 219 69 0 0 chr11 76198267 76198296 -72585176 + (TTG)n Simple_repeat Simple_repeat 2 30 0 664 211 223 53 chr11 76198296 76198384 -72585088 - L1MC5 LINE L1 -1196 6765 6693 216 273 122 81 chr11 76198500 76198672 -72584800 + L2 LINE L2 3135 3313 0 189 257 200 50 chr11 76199324 76199464 -72584008 - MIR SINE MIR -49 213 53 24 32 0 0 chr11 76199962 76199993 -72583479 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr11 76200741 76200769 -72582703 + AT_rich Low_complexity Low_complexity 1 28 0 32 43 0 0 chr11 76200874 76200920 -72582552 + AT_rich Low_complexity Low_complexity 1 46 0 1828 147 3 11 chr11 76200950 76201236 -72582236 - AluJo SINE Alu -28 284 1 3272 109 4 2 chr11 76201301 76201785 -72581687 + L1PA13 LINE L1 5677 6161 -2 4038 224 66 45 chr11 76201788 76201866 -72581606 + L1MC3 LINE L1 3941 4016 -2130 1385 171 60 76 chr11 76201866 76202181 -72581291 + AluJo SINE Alu 1 310 -2 4038 224 66 45 chr11 76202181 76204649 -72578823 + L1MC3 LINE L1 4016 5403 -743 2293 121 7 0 chr11 76204669 76205172 -72578300 + L1P4 LINE L1 5110 5616 -547 240 86 0 0 chr11 76205272 76205307 -72578165 + (A)n Simple_repeat Simple_repeat 1 35 0 2410 104 0 0 chr11 76206203 76206512 -72576960 + AluSc SINE Alu 1 309 0 1091 261 4 0 chr11 76206820 76207065 -72576407 + MIR SINE MIR 17 262 0 406 216 99 64 chr11 76207292 76207318 -72576154 + MER104 DNA MER2_type 4 28 -1870 1824 184 0 10 chr11 76207318 76207628 -72575844 - AluJo SINE Alu -5 307 1 406 216 99 64 chr11 76207628 76207772 -72575700 + MER104 DNA MER2_type 28 180 0 606 155 39 0 chr11 76208205 76208334 -72575138 + L1M4 LINE L1 8 141 -6243 * 2067 182 41 107 chr11 76208329 76209005 -72574467 + L1M4 LINE L1 387 1018 -5366 958 218 33 57 chr11 76209001 76209060 -72574412 + L1M4 LINE L1 3219 3278 -3104 * 1936 134 3 3 chr11 76209060 76209369 -72574103 + AluSx SINE Alu 1 309 0 958 218 33 57 chr11 76209369 76209730 -72573742 + L1M4 LINE L1 3278 3630 -2752 968 131 40 15 chr11 76209733 76209932 -72573540 + L1MB4 LINE L1 5732 5935 -245 3117 115 44 41 chr11 76209933 76210360 -72573112 + Tigger3b DNA MER2_type 340 771 -2257 2347 91 7 0 chr11 76210360 76210656 -72572816 + AluSx SINE Alu 1 298 -14 3117 115 44 41 chr11 76210656 76210843 -72572629 + Tigger3b DNA MER2_type 771 956 -275 1249 224 35 4 chr11 76210847 76211106 -72572366 - AluJo SINE Alu -45 267 1 1790 118 43 4 chr11 76211106 76211385 -72572087 + Tigger3b DNA MER2_type 942 1231 0 198 71 0 0 chr11 76211394 76211422 -72572050 + (TG)n Simple_repeat Simple_repeat 2 29 0 2792 170 15 0 chr11 76212194 76212717 -72570755 + L1MB7 LINE L1 5462 5992 -192 468 290 81 28 chr11 76212803 76213051 -72570421 + L1M4 LINE L1 4908 5168 -1214 2764 23 0 0 chr11 76213152 76213460 -72570012 - AluYa5 SINE Alu -3 308 1 2433 185 28 4 chr11 76213698 76214191 -72569281 - L1MB5 LINE L1 -8 6166 5662 2391 82 0 32 chr11 76214192 76214508 -72568964 + AluSx SINE Alu 1 306 -6 459 337 67 64 chr11 76214574 76214694 -72568778 + L2 LINE L2 2896 3014 -258 2152 107 21 3 chr11 76214694 76214984 -72568488 + AluSx SINE Alu 2 296 -16 459 337 67 64 chr11 76214984 76215071 -72568401 + L2 LINE L2 3014 3099 -173 1708 174 3 43 chr11 76215071 76215375 -72568097 - AluJo SINE Alu -20 292 1 459 337 67 64 chr11 76215375 76215540 -72567932 + L2 LINE L2 3099 3270 -2 2115 196 65 54 chr11 76215760 76216398 -72567074 + MER77 LTR ERV1 41 728 -8 1456 71 0 16 chr11 76216540 76216724 -72566748 - AluSp SINE Alu -16 297 117 1089 210 107 62 chr11 76216838 76217166 -72566306 + L1 LINE L1 3495 3852 -2294 1942 132 3 30 chr11 76217166 76217469 -72566003 + AluJb SINE Alu 18 312 0 1089 210 107 62 chr11 76217469 76217607 -72565865 + L1 LINE L1 3852 3982 -2164 365 208 0 0 chr11 76217613 76217685 -72565787 - AluJ/FRAM SINE Alu -3 299 228 550 233 10 0 chr11 76217696 76217848 -72565624 + L1 LINE L1 3980 4134 -2012 255 109 0 0 chr11 76217883 76217917 -72565555 + (TTTCC)n Simple_repeat Simple_repeat 3 39 -9 1773 132 0 36 chr11 76217917 76218198 -72565274 - AluSx SINE Alu -41 271 1 255 109 0 0 chr11 76218198 76218209 -72565263 + (TTTCC)n Simple_repeat Simple_repeat 38 48 0 642 270 25 0 chr11 76219151 76219314 -72564158 - MIR SINE MIR -23 239 73 1035 222 99 15 chr11 76219867 76220210 -72563262 - L1ME2 LINE L1 -337 5827 5456 2104 126 0 28 chr11 76220211 76220528 -72562944 - AluSx SINE Alu -4 308 1 1775 97 11 30 chr11 76220552 76220821 -72562651 + AluSp SINE Alu 1 264 -49 284 67 0 0 chr11 76220921 76220966 -72562506 + AluSp SINE Alu 253 297 -6 2115 195 68 50 chr11 76221108 76221746 -72561726 - MER77 LTR ERV1 -8 597 41 459 337 67 64 chr11 76221966 76222131 -72561341 - L2 LINE L2 -2 3270 3107 1670 181 0 40 chr11 76222131 76222435 -72561037 + AluJo SINE Alu 1 292 -20 459 337 67 64 chr11 76222435 76222522 -72560950 - L2 LINE L2 -165 3107 3022 2152 107 21 3 chr11 76222522 76222812 -72560660 - AluSx SINE Alu -16 296 2 459 337 67 64 chr11 76222812 76222932 -72560540 - L2 LINE L2 -250 3022 2896 2391 82 0 32 chr11 76222998 76223314 -72560158 - AluSx SINE Alu -6 306 1 2433 185 28 4 chr11 76223315 76223808 -72559664 + L1MB5 LINE L1 5662 6166 -8 2720 20 0 0 chr11 76224046 76224347 -72559125 + AluYa5 SINE Alu 1 301 -10 216 111 0 0 chr11 76224348 76224384 -72559088 + (CCAA)n Simple_repeat Simple_repeat 4 39 0 1532 176 18 7 chr11 76224982 76225304 -72558168 - AluJb SINE Alu 0 325 1 664 211 223 53 chr11 76225928 76226233 -72557239 - L1MC5 LINE L1 -808 7153 6765 219 69 0 0 chr11 76226233 76226262 -72557210 + (TTG)n Simple_repeat Simple_repeat 2 30 0 664 211 223 53 chr11 76226262 76226350 -72557122 - L1MC5 LINE L1 -1196 6765 6693 184 270 121 92 chr11 76226466 76226640 -72556832 + L2 LINE L2 3135 3313 0 189 257 200 50 chr11 76227292 76227432 -72556040 - MIR SINE MIR -49 213 53 24 32 0 0 chr11 76227930 76227961 -72555511 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr11 76228709 76228737 -72554735 + AT_rich Low_complexity Low_complexity 1 28 0 32 43 0 0 chr11 76228842 76228888 -72554584 + AT_rich Low_complexity Low_complexity 1 46 0 1828 147 3 11 chr11 76228918 76229204 -72554268 - AluJo SINE Alu -28 284 1 3272 109 4 2 chr11 76229269 76229753 -72553719 + L1PA13 LINE L1 5677 6161 -2 4038 224 66 45 chr11 76229756 76229834 -72553638 + L1MC3 LINE L1 3941 4016 -2130 1385 171 60 76 chr11 76229834 76230149 -72553323 + AluJo SINE Alu 1 310 -2 4038 224 66 45 chr11 76230149 76232617 -72550855 + L1MC3 LINE L1 4016 5403 -743 6337 89 4 1 chr11 76232637 76233682 -72549790 + L1PA13 LINE L1 5110 6158 -5 26 30 0 0 chr11 76233682 76233715 -72549757 + AT_rich Low_complexity Low_complexity 1 33 0 423 0 0 0 chr11 76234018 76234065 -72549407 + (TATG)n Simple_repeat Simple_repeat 2 48 0 1154 191 5 23 chr11 76234088 76234303 -72549169 - AluJb SINE Alu -101 211 1 313 293 94 11 chr11 76234318 76234509 -72548963 + L1MA9 LINE L1 6068 6274 -38 21 0 0 0 chr11 76234509 76234530 -72548942 + AT_rich Low_complexity Low_complexity 1 21 0 1858 148 58 30 chr11 76234695 76235060 -72548412 + THE1C LTR MaLR 1 375 0 9706 122 15 42 chr11 76235062 76236685 -72546787 + THE1C-int LTR MaLR 3 1580 0 1660 173 50 36 chr11 76236685 76237044 -72546428 + THE1B LTR MaLR 1 364 0 3620 208 45 12 chr11 76237272 76238046 -72545426 + L1M4c LINE L1 6 808 -5576 207 0 0 0 chr11 76238046 76238069 -72545403 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3620 208 45 12 chr11 76238069 76238100 -72545372 + L1M4c LINE L1 808 837 -5547 943 204 23 26 chr11 76238717 76238982 -72544490 - L1MA9 LINE L1 -34 6278 6015 202 194 0 0 chr11 76238996 76239032 -72544440 + (CA)n Simple_repeat Simple_repeat 2 37 0 650 136 17 153 chr11 76239037 76239221 -72544251 + L1MA9 LINE L1 5796 5943 -348 1874 140 28 3 chr11 76239221 76239507 -72543965 + AluJb SINE Alu 1 293 -19 650 136 17 153 chr11 76239507 76239557 -72543915 + L1MA9 LINE L1 5943 5998 -293 303 355 9 0 chr11 76239865 76239975 -72543497 - L2 LINE L2 -10 3303 3193 21 0 0 0 chr11 76239982 76240003 -72543469 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr11 76240090 76240113 -72543359 + AT_rich Low_complexity Low_complexity 1 23 0 1603 205 17 14 chr11 76240258 76240551 -72542921 - AluJo SINE Alu -18 294 1 341 324 127 60 chr11 76240824 76241032 -72542440 - L2 LINE L2 -435 2879 2644 2479 68 0 0 chr11 76241032 76241328 -72542144 + AluY SINE Alu 1 296 -15 341 324 127 60 chr11 76241328 76241418 -72542054 - L2 LINE L2 -670 2644 2561 862 140 0 62 chr11 76242089 76242268 -72541204 - L1PA11 LINE L1 0 6174 6007 340 313 21 0 chr11 76242991 76243087 -72540385 + MER5B DNA MER1_type 80 177 -1 276 186 0 0 chr11 76243176 76243235 -72540237 + (CGTA)n Simple_repeat Simple_repeat 4 62 0 1419 127 112 19 chr11 76243235 76243494 -72539978 - AluJb SINE Alu -29 283 1 458 292 51 7 chr11 76243495 76243632 -72539840 + MIR SINE MIR 104 246 -16 244 308 51 39 chr11 76243634 76243712 -72539760 - L2 LINE L2 -1 3312 3234 2276 93 0 0 chr11 76243722 76244044 -72539428 - AluSc SINE Alu 0 322 1 344 339 35 0 chr11 76244090 76244205 -72539267 - MIR SINE MIR -56 152 34 447 283 14 36 chr11 76244410 76244548 -72538924 + MIR SINE MIR 27 161 -101 1402 127 209 0 chr11 76244831 76245123 -72538349 - Cheshire DNA MER1_type -118 2302 1950 2060 137 30 33 chr11 76245130 76245524 -72537948 - L1MC1 LINE L1 0 6333 5941 1640 148 11 15 chr11 76246134 76246398 -72537074 + AluJo SINE Alu 48 310 -2 192 250 0 0 chr11 76246417 76246457 -72537015 - MIR3 SINE MIR -27 181 142 2247 135 26 3 chr11 76246508 76246885 -72536587 + L1PA16 LINE L1 5777 6162 -4 1996 140 7 0 chr11 76247263 76247571 -72535901 + AluSx SINE Alu 2 311 -1 6919 149 11 25 chr11 76248619 76249956 -72533516 - L1MA4A LINE L1 -8 6295 4994 2071 129 10 0 chr11 76249956 76250250 -72533222 - AluSx SINE Alu -15 297 1 6919 149 11 25 chr11 76250250 76251296 -72532176 - L1MA4A LINE L1 -1309 4994 3935 880 253 58 98 chr11 76251624 76252074 -72531398 + MLT1J2 LTR MaLR 1 432 -18 1769 169 10 17 chr11 76252321 76252611 -72530861 + AluJo SINE Alu 1 288 -24 2336 100 0 0 chr11 76252814 76253113 -72530359 + AluY SINE Alu 1 299 -12 7221 20 1 0 chr11 76253119 76253956 -72529516 + L1PA3 LINE L1 5318 6155 0 1744 195 0 3 chr11 76254014 76254317 -72529155 - AluJo SINE Alu -10 302 1 356 328 99 14 chr11 76254378 76254640 -72528832 + L1MC/D LINE L1 5327 5615 -506 657 184 0 9 chr11 76254792 76254906 -72528566 - AluJb SINE Alu -197 115 3 281 347 144 0 chr11 76255889 76256062 -72527410 - MIR SINE MIR -64 198 1 187 167 0 71 chr11 76257085 76257127 -72526345 - MIR SINE MIR -3 259 221 8917 41 1 7 chr11 76257330 76258537 -72524935 + L1PA4 LINE L1 2641 3840 -2306 13296 27 1 0 chr11 76258537 76260894 -72522578 + L1PA4 LINE L1 3792 6155 0 205 269 19 0 chr11 76261173 76261225 -72522247 + L3 LINE CR1 1417 1469 -108 1018 213 52 0 chr11 76261242 76261453 -72522019 - MER58A DNA MER1_type -1 223 2 485 185 82 22 chr11 76262081 76262216 -72521256 + MER5C DNA MER1_type 18 160 -164 1399 238 7 3 chr11 76262231 76262533 -72520939 + AluJo SINE Alu 2 304 -8 25 0 0 0 chr11 76262601 76262626 -72520846 + AT_rich Low_complexity Low_complexity 1 25 0 458 17 17 0 chr11 76263065 76263124 -72520348 + (CA)n Simple_repeat Simple_repeat 2 61 0 254 337 25 30 chr11 76263391 76263590 -72519882 + Charlie3 DNA MER1_type 1367 1564 -1146 22 0 0 0 chr11 76263597 76263619 -72519853 + AT_rich Low_complexity Low_complexity 1 22 0 2260 113 3 0 chr11 76264041 76264342 -72519130 - AluSx SINE Alu -10 302 1 314 193 270 14 chr11 76265018 76265140 -72518332 + FAM SINE Alu 1 120 -55 2205 126 3 0 chr11 76265599 76265900 -72517572 - AluSx SINE Alu -10 302 1 189 0 0 0 chr11 76265900 76265921 -72517551 + (T)n Simple_repeat Simple_repeat 1 21 0 340 252 78 0 chr11 76266687 76266790 -72516682 + MER5C DNA MER1_type 206 316 -8 969 184 5 44 chr11 76266800 76267006 -72516466 + MER58A DNA MER1_type 27 224 0 200 313 0 16 chr11 76267356 76267420 -72516052 + GA-rich Low_complexity Low_complexity 4 66 0 880 174 0 14 chr11 76267437 76267581 -72515891 - AluJb SINE Alu -20 292 151 * 939 152 0 37 chr11 76267580 76267674 -72515798 + AluJo/FRAM SINE Alu 140 227 -85 2098 119 22 35 chr11 76267674 76268043 -72515429 - THE1B LTR MaLR 0 364 1 939 152 0 37 chr11 76268043 76268112 -72515360 + AluJo/FRAM SINE Alu 227 297 -15 347 186 200 7 chr11 76268119 76268264 -72515208 + Charlie7 DNA MER1_type 413 585 -2027 273 131 283 0 chr11 76268312 76268411 -72515061 + Charlie7 DNA MER1_type 2414 2540 -72 1493 110 95 0 chr11 76268526 76268790 -72514682 + L1MB4 LINE L1 5892 6180 0 192 337 67 0 chr11 76269362 76269451 -72514021 - L2 LINE L2 0 3272 3178 2454 73 0 10 chr11 76269555 76269868 -72513604 + AluY SINE Alu 1 310 -1 195 129 0 0 chr11 76270284 76270315 -72513157 + (GGGA)n Simple_repeat Simple_repeat 4 34 0 339 307 27 20 chr11 76270356 76270506 -72512966 + L2 LINE L2 89 239 -3075 187 253 30 81 chr11 76270500 76270599 -72512873 + L3 LINE CR1 1377 1470 -107 * 2565 53 0 0 chr11 76270632 76270933 -72512539 - AluY SINE Alu -10 301 1 1932 100 103 0 chr11 76271346 76271617 -72511855 - AluSx SINE Alu -8 304 6 217 233 0 0 chr11 76273285 76273328 -72510144 - MIR3 SINE MIR -10 198 156 30333 100 15 64 chr11 76273774 76280246 -72503226 + L1PA7 LINE L1 12 6154 0 2210 127 33 28 chr11 76280587 76280949 -72502523 - THE1B LTR MaLR 0 364 1 1394 78 57 114 chr11 76281002 76281283 -72502189 + L1PA11 LINE L1 5909 6173 -1 1026 117 0 14 chr11 76281442 76281587 -72501885 + FLAM_C SINE Alu 1 143 0 1067 169 17 0 chr11 76281606 76281783 -72501689 + AluJb SINE Alu 120 299 -13 2273 118 0 0 chr11 76281783 76282087 -72501385 + AluSx SINE Alu 1 304 -8 225 94 0 0 chr11 76282191 76282223 -72501249 + (CATA)n Simple_repeat Simple_repeat 4 35 0 454 282 23 27 chr11 76282271 76282530 -72500942 + L1MEd LINE L1 954 1211 -4908 186 365 0 0 chr11 76283115 76283167 -72500305 + L2 LINE L2 3204 3255 -17 2346 94 0 7 chr11 76283172 76283480 -72499992 - AluSx SINE Alu -6 306 1 383 308 241 17 chr11 76283818 76284166 -72499306 - L3 LINE CR1 -69 1508 1083 1034 136 0 0 chr11 76284166 76284313 -72499159 + FRAM SINE Alu 2 148 -28 1278 265 5 2 chr11 76284387 76284780 -72498692 + L1ME3A LINE L1 5327 5720 -450 1569 236 31 102 chr11 76284786 76284972 -72498500 + L1MB7 LINE L1 5450 5648 -536 1527 120 96 8 chr11 76284972 76285222 -72498250 + AluSx SINE Alu 40 311 -1 1569 236 31 102 chr11 76285222 76285236 -72498236 + L1MB7 LINE L1 5648 5661 -523 1928 156 0 7 chr11 76285236 76285537 -72497935 + AluJb SINE Alu 1 299 -13 1569 236 31 102 chr11 76285537 76286096 -72497376 + L1MB7 LINE L1 5661 6156 -28 284 234 36 18 chr11 76286117 76286228 -72497244 + L1MC5 LINE L1 7769 7881 -80 2321 84 40 0 chr11 76286228 76286527 -72496945 + AluY SINE Alu 1 311 0 2181 176 103 11 chr11 76286610 76287154 -72496318 + L1ME1 LINE L1 5293 5886 -280 482 284 51 0 chr11 76287156 76287323 -72496149 + L1MA10 LINE L1 5991 6327 -7 572 214 56 34 chr11 76287327 76287505 -72495967 + L1ME3A LINE L1 5965 6146 -24 1617 230 79 68 chr11 76287524 76288126 -72495346 + L1ME3 LINE L1 5425 6038 -124 1562 198 7 10 chr11 76288126 76288419 -72495053 - AluJo SINE Alu -20 292 1 1617 230 79 68 chr11 76288419 76288538 -72494934 + L1ME3 LINE L1 6038 6154 -8 2150 101 7 10 chr11 76288602 76288899 -72494573 - AluSg SINE Alu -14 296 1 2024 158 6 3 chr11 76289417 76289728 -72493744 + AluJo SINE Alu 1 312 0 311 272 110 93 chr11 76289980 76290063 -72493409 + HAL1 LINE L1 2253 2333 -174 2076 129 0 17 chr11 76290063 76290357 -72493115 + AluSx SINE Alu 1 289 -23 252 0 0 0 chr11 76290362 76290390 -72493082 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 311 272 110 93 chr11 76290390 76290546 -72492926 + HAL1 LINE L1 2336 2502 -5 2013 130 0 10 chr11 76290555 76290854 -72492618 + AluSc SINE Alu 1 296 -13 23 54 0 0 chr11 76290876 76290913 -72492559 + AT_rich Low_complexity Low_complexity 1 37 0 984 189 0 0 chr11 76290926 76291095 -72492377 - AluSp SINE Alu -11 302 134 386 279 82 0 chr11 76291162 76291284 -72492188 + MIR SINE MIR 131 262 0 1113 69 0 0 chr11 76291325 76291456 -72492016 + AluSq/x SINE Alu 4 134 -179 2329 90 3 7 chr11 76291457 76291758 -72491714 + AluSc SINE Alu 1 300 -9 2344 103 3 0 chr11 76294548 76294850 -72488622 + AluSx SINE Alu 1 303 -9 430 300 111 11 chr11 76295117 76295297 -72488175 + MIR SINE MIR 8 205 -57 2102 114 14 7 chr11 76296410 76296707 -72486765 - AluSx SINE Alu -13 299 1 1228 167 67 13 chr11 76296887 76297126 -72486346 - AluJb SINE Alu -10 302 51 1787 153 13 10 chr11 76297263 76297563 -72485909 - AluJo SINE Alu 0 312 12 239 219 0 68 chr11 76298075 76298148 -72485324 - MIR SINE MIR -98 164 97 2315 104 0 28 chr11 76298302 76298620 -72484852 + AluSx SINE Alu 1 309 -3 2080 140 3 0 chr11 76298975 76299261 -72484211 - AluJb SINE Alu -19 293 7 747 195 89 0 chr11 76299430 76299599 -72483873 - L1MB8 LINE L1 -47 6131 5948 198 0 0 0 chr11 76299640 76299662 -72483810 + (T)n Simple_repeat Simple_repeat 1 22 0 336 339 35 0 chr11 76299904 76300019 -72483453 + MIR SINE MIR 34 152 -56 2309 93 0 0 chr11 76300065 76300387 -72483085 + AluSc SINE Alu 1 322 0 234 308 51 39 chr11 76300397 76300475 -72482997 + L2 LINE L2 3234 3312 -1 520 254 187 38 chr11 76300477 76300615 -72482857 - MIR SINE MIR -16 246 130 1520 139 103 18 chr11 76300615 76300875 -72482597 + AluJb SINE Alu 1 288 -24 501 17 0 0 chr11 76300875 76300933 -72482539 + (CATA)n Simple_repeat Simple_repeat 3 60 0 1520 139 103 18 chr11 76300933 76300953 -72482519 + AluJb SINE Alu 288 305 -7 520 254 187 38 chr11 76300953 76301022 -72482450 - MIR SINE MIR -132 130 8 353 313 21 0 chr11 76301022 76301118 -72482354 - MER5B DNA MER1_type -1 177 80 1274 68 0 0 chr11 76301839 76302002 -72481470 + L1PA8 LINE L1 6005 6167 -5 2526 68 0 0 chr11 76302782 76303078 -72480394 - AluY SINE Alu -15 296 1 1640 173 62 19 chr11 76303302 76303673 -72479799 + L1MB7 LINE L1 5789 6175 -9 1711 68 0 5 chr11 76303712 76303919 -72479553 - AluY SINE Alu -10 301 96 367 268 130 7 chr11 76303999 76304069 -72479403 + MIR SINE MIR 71 131 -131 291 114 0 0 chr11 76304069 76304113 -72479359 + (CTA)n Simple_repeat Simple_repeat 3 46 0 367 268 130 7 chr11 76304113 76304180 -72479292 + MIR SINE MIR 131 225 -37 192 192 48 115 chr11 76304373 76304477 -72478995 + L3 LINE CR1 1293 1389 -188 1113 169 52 29 chr11 76304639 76304911 -72478561 + L1MA8 LINE L1 6009 6286 -5 445 267 23 40 chr11 76304979 76305155 -72478317 + ERVL LTR ERVL 2291 2463 -3301 649 356 61 8 chr11 76305433 76305795 -72477677 - L2 LINE L2 0 3313 2933 207 0 0 0 chr11 76305928 76305951 -72477521 + (A)n Simple_repeat Simple_repeat 1 23 0 524 255 21 0 chr11 76306078 76306219 -72477253 - MLT1K LTR MaLR -311 277 134 877 162 152 0 chr11 76306730 76306927 -72476545 + L1MD3 LINE L1 7693 7919 -76 2222 109 0 10 chr11 76307096 76307434 -72476038 + AluSx SINE Alu 1 312 0 343 235 157 0 chr11 76307938 76308040 -72475432 - MIR SINE MIR -28 234 117 237 365 51 7 chr11 76309677 76309814 -72473658 - MIR3 SINE MIR 0 208 66 391 233 51 68 chr11 76309894 76310070 -72473402 - MIR3 SINE MIR -19 189 17 2242 115 3 10 chr11 76310107 76310421 -72473051 + AluSx SINE Alu 1 312 0 499 321 49 33 chr11 76310452 76310686 -72472786 - MIR SINE MIR -11 251 5 301 113 65 0 chr11 76310850 76310912 -72472560 + CT-rich Low_complexity Low_complexity 3 68 0 202 308 26 39 chr11 76311526 76311604 -72471868 - L3 LINE CR1 -730 847 771 211 288 116 27 chr11 76312688 76312834 -72470638 - MIR3 SINE MIR -33 175 17 234 322 106 10 chr11 76313566 76313774 -72469698 - L2 LINE L2 -222 3050 2823 533 202 65 42 chr11 76314011 76314179 -72469293 + MIR SINE MIR 42 213 -49 2144 133 3 0 chr11 76314400 76314693 -72468779 - AluSx SINE Alu -18 294 1 1823 137 53 11 chr11 76314845 76315130 -72468342 + AluJb SINE Alu 1 297 -15 296 247 105 32 chr11 76315131 76315321 -72468151 - L1MC4 LINE L1 -150 7892 7689 790 184 33 13 chr11 76315404 76315583 -72467889 - AluJb SINE Alu 0 312 137 971 185 14 50 chr11 76315594 76315701 -72467771 - L1M4 LINE L1 -871 6086 5977 2255 126 0 0 chr11 76315701 76316002 -72467470 + AluSx SINE Alu 1 301 -11 971 185 14 50 chr11 76316002 76316179 -72467293 - L1M4 LINE L1 -980 5977 5723 1341 186 0 115 chr11 76316191 76316540 -72466932 - L1M4 LINE L1 -6540 319 11 2879 162 12 48 chr11 76316548 76317351 -72466121 - L1ME1 LINE L1 -341 5825 5046 240 316 34 0 chr11 76317423 76317540 -72465932 - L1MC4 LINE L1 -5 8037 7917 288 267 128 77 chr11 76318251 76318446 -72465026 - MIR SINE MIR -38 224 20 23 0 0 0 chr11 76318748 76318771 -72464701 + AT_rich Low_complexity Low_complexity 1 23 0 393 216 154 96 chr11 76318848 76319080 -72464392 - L1ME4a LINE L1 -21 6100 5838 3845 161 28 14 chr11 76319080 76319796 -72463676 + L1MB7 LINE L1 5451 6176 -8 393 216 154 96 chr11 76319796 76319919 -72463553 - L1ME4a LINE L1 -283 5838 5724 234 238 38 25 chr11 76319926 76320006 -72463466 - L1MC5 LINE L1 -49 7912 7832 343 324 29 37 chr11 76321347 76321483 -72461989 - MIR SINE MIR -11 251 117 574 206 128 3 chr11 76321733 76321907 -72461565 + MIR SINE MIR 54 262 0 301 191 157 56 chr11 76322207 76322296 -72461176 + MER5A DNA MER1_type 6 103 -86 1509 306 0 74 chr11 76322301 76322638 -72460834 - AluSx SINE Alu 0 312 1 244 296 0 45 chr11 76323076 76323164 -72460308 + MIR3 SINE MIR 112 195 -13 730 200 63 11 chr11 76323263 76323438 -72460034 + MER53 DNA DNA 1 184 -5 250 295 57 19 chr11 76323953 76324058 -72459414 - L2 LINE L2 -42 3230 3122 184 250 23 0 chr11 76324151 76324195 -72459277 + L2 LINE L2 3226 3270 -2 249 245 75 53 chr11 76325366 76325460 -72458012 + L2 LINE L2 3139 3234 -38 * 262 229 21 0 chr11 76325434 76325482 -72457990 - L2 LINE L2 -25 3247 3199 263 297 0 0 chr11 76326404 76326478 -72456994 + MIR SINE MIR 189 262 0 2341 105 3 0 chr11 76327205 76327509 -72455963 - AluSx SINE Alu -7 305 1 2264 107 3 19 chr11 76330694 76331011 -72452461 - AluSx SINE Alu 0 312 1 414 216 10 41 chr11 76331013 76331110 -72452362 + L2 LINE L2 3220 3313 0 187 215 31 62 chr11 76331115 76331180 -72452292 + MIR SINE MIR 139 201 -61 433 194 68 29 chr11 76331200 76331303 -72452169 - L2 LINE L2 -37 3276 3170 2273 95 3 23 chr11 76331336 76331641 -72451831 - AluSx SINE Alu -13 299 1 345 241 198 35 chr11 76331645 76331761 -72451711 - MIR SINE MIR -58 150 16 287 210 0 49 chr11 76332710 76332791 -72450681 + GA-rich Low_complexity Low_complexity 1 77 0 226 156 0 22 chr11 76333008 76333053 -72450419 + (CA)n Simple_repeat Simple_repeat 2 45 0 386 216 0 31 chr11 76333463 76333560 -72449912 - LTR33 LTR ERVL -1 520 427 191 182 0 68 chr11 76333959 76334003 -72449469 - MIR SINE MIR -102 160 120 1794 197 8 24 chr11 76334124 76334494 -72448978 - MLT1A1 LTR MaLR -1 364 1 247 252 224 21 chr11 76334704 76334847 -72448625 + MIR3 SINE MIR 10 181 -27 267 224 29 20 chr11 76335302 76335406 -72448066 - MIR SINE MIR -73 135 34 505 355 52 4 chr11 76336285 76336516 -72446956 - MIR SINE MIR -19 243 2 316 279 82 51 chr11 76336597 76336755 -72446717 + MIR SINE MIR 20 182 -80 2347 100 0 7 chr11 76337843 76338143 -72445329 + AluSx SINE Alu 1 298 -14 275 253 51 13 chr11 76338157 76338236 -72445236 + L3 LINE CR1 987 1068 -509 491 215 96 91 chr11 76338977 76339186 -72444286 - MER63A DNA MER1_type 0 210 1 187 310 197 0 chr11 76339194 76339265 -72444207 + L2 LINE L2 3150 3234 -38 263 250 68 11 chr11 76339693 76339781 -72443691 + MIR3 SINE MIR 64 156 -52 466 205 58 2 chr11 76341430 76341603 -72441869 + MER58A DNA MER1_type 1 215 -9 799 217 72 12 chr11 76341606 76341772 -72441700 + AluJo SINE Alu 1 176 -136 221 317 20 40 chr11 76341868 76341969 -72441503 - L3 LINE CR1 -13 1564 1466 225 374 63 29 chr11 76342626 76342682 -72440790 - MIR SINE MIR -6 256 203 2003 120 34 24 chr11 76342682 76342973 -72440499 + AluSx SINE Alu 1 294 -18 225 374 63 29 chr11 76342973 76343090 -72440382 - MIR SINE MIR -59 203 77 2252 125 0 6 chr11 76343310 76343621 -72439851 - AluSx SINE Alu -1 311 3 1014 197 0 5 chr11 76343804 76343997 -72439475 - AluSx SINE Alu 0 310 119 906 149 0 8 chr11 76344118 76344252 -72439220 - AluSx SINE Alu -179 133 1 182 309 75 0 chr11 76344730 76344824 -72438648 + L2 LINE L2 2863 2963 -350 411 288 42 0 chr11 76344923 76345041 -72438431 + MIR SINE MIR 116 238 -24 214 287 58 0 chr11 76345449 76345536 -72437936 + MIR SINE MIR 33 124 -84 297 51 0 0 chr11 76346477 76346516 -72436956 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 224 260 52 13 chr11 76346573 76346650 -72436822 - L3 LINE CR1 -108 1469 1390 295 330 0 10 chr11 76347089 76347189 -72436283 - MIR SINE MIR -147 115 17 180 0 0 0 chr11 76348144 76348164 -72435308 + (CA)n Simple_repeat Simple_repeat 1 20 0 326 242 170 73 chr11 76348167 76348205 -72435267 - MIR3 SINE MIR -14 194 161 2661 74 5 5 chr11 76348205 76348583 -72434889 + L1PA7 LINE L1 5777 6154 0 326 242 170 73 chr11 76348583 76348709 -72434763 - MIR3 SINE MIR -47 161 14 186 341 103 32 chr11 76349233 76349699 -72433773 + L2 LINE L2 2385 2883 -431 373 235 108 10 chr11 76349840 76349942 -72433530 - MIR SINE MIR -139 123 12 281 301 39 48 chr11 76350080 76350223 -72433249 - MIR SINE MIR -63 145 23 242 272 144 32 chr11 76350548 76350673 -72432799 + MIR SINE MIR 57 195 -67 321 299 124 41 chr11 76350992 76351306 -72432166 - L2 LINE L2 -102 3170 2831 193 308 0 0 chr11 76351617 76351669 -72431803 - MIR SINE MIR -69 139 88 229 354 9 18 chr11 76351869 76351982 -72431490 + MIR SINE MIR 37 148 -60 309 303 34 87 chr11 76352638 76352995 -72430477 - L2 LINE L2 -99 3173 2836 386 271 132 0 chr11 76354163 76354307 -72429165 + MIR SINE MIR 49 211 -51 231 360 24 32 chr11 76354503 76354628 -72428844 - MIR SINE MIR -75 187 64 332 319 7 14 chr11 76355166 76355310 -72428162 + L2 LINE L2 2667 2809 -505 534 261 60 88 chr11 76355481 76355799 -72427673 - L2 LINE L2 -46 3226 2918 331 241 139 36 chr11 76356035 76356201 -72427271 - MIR SINE MIR -52 210 28 240 289 102 16 chr11 76357889 76358017 -72425455 + L2 LINE L2 3132 3270 -2 199 318 93 0 chr11 76358041 76358148 -72425324 + MIR SINE MIR 30 146 -62 259 314 35 12 chr11 76358697 76358783 -72424689 - MIR3 SINE MIR -49 159 72 233 211 19 0 chr11 76358871 76358923 -72424549 + MIR SINE MIR 108 160 -102 1761 180 0 0 chr11 76358944 76359228 -72424244 - AluJo SINE Alu -24 288 5 285 302 39 23 chr11 76360197 76360326 -72423146 + L2 LINE L2 3099 3229 -43 2315 116 0 0 chr11 76360331 76360632 -72422840 - AluSx SINE Alu -11 301 1 320 275 114 0 chr11 76360687 76360818 -72422654 - MIR SINE MIR -14 248 103 235 271 0 14 chr11 76361061 76361131 -72422341 + MST-int LTR MaLR 718 786 -865 433 201 109 10 chr11 76361215 76361411 -72422061 - MER45A DNA AcHobo 0 178 1 306 321 22 58 chr11 76361630 76361767 -72421705 - MIR3 SINE MIR -67 141 10 301 331 41 37 chr11 76362276 76362521 -72420951 + L2 LINE L2 2804 3049 -223 257 271 52 85 chr11 76362641 76362933 -72420539 - L2 LINE L2 -225 3047 2768 267 227 9 36 chr11 76362975 76363085 -72420387 - L1M4 LINE L1 -2981 3165 3059 1859 176 10 0 chr11 76363085 76363386 -72420086 + AluSx SINE Alu 1 304 -8 396 300 111 11 chr11 76363653 76363833 -72419639 + MIR SINE MIR 8 205 -57 2117 114 14 7 chr11 76364946 76365243 -72418229 - AluSx SINE Alu -13 299 1 1229 167 67 13 chr11 76365423 76365662 -72417810 - AluJb SINE Alu -10 302 51 1789 153 13 10 chr11 76365798 76366098 -72417374 - AluJo SINE Alu 0 312 12 226 219 0 68 chr11 76366610 76366683 -72416789 - MIR SINE MIR -98 164 97 2327 104 0 28 chr11 76366837 76367155 -72416317 + AluSx SINE Alu 1 309 -3 2183 126 3 0 chr11 76367510 76367796 -72415676 - AluJb SINE Alu -19 293 7 760 195 89 0 chr11 76367965 76368134 -72415338 - L1MB8 LINE L1 -47 6131 5948 180 0 0 0 chr11 76368175 76368195 -72415277 + (T)n Simple_repeat Simple_repeat 1 20 0 405 0 0 0 chr11 76368309 76368354 -72415118 + (TG)n Simple_repeat Simple_repeat 2 46 0 260 303 30 0 chr11 76368640 76368739 -72414733 - MIR3 SINE MIR -26 182 81 473 281 135 5 chr11 76369530 76369715 -72413757 + MIR SINE MIR 48 256 -6 2548 74 0 0 chr11 76369717 76370026 -72413446 + AluY SINE Alu 1 309 -2 420 280 17 0 chr11 76370044 76370162 -72413310 - L2 LINE L2 -2 3270 3151 210 250 0 0 chr11 76370223 76370267 -72413205 + L2 LINE L2 3262 3305 -8 236 272 139 29 chr11 76370666 76370852 -72412620 - MIR SINE MIR -10 252 43 251 285 183 22 chr11 76371150 76371287 -72412185 + L3 LINE CR1 1348 1506 -71 389 300 162 9 chr11 76371303 76371513 -72411959 - MIR SINE MIR 0 262 21 374 279 37 48 chr11 76372626 76372798 -72410674 + MIR SINE MIR 38 206 -56 359 290 93 52 chr11 76372974 76373167 -72410305 + MIR SINE MIR 32 232 -30 281 343 19 0 chr11 76373288 76373396 -72410076 + MIR3 SINE MIR 58 167 -41 754 254 108 4 chr11 76374170 76374402 -72409070 - MIR SINE MIR 0 262 7 187 244 0 100 chr11 76374516 76374606 -72408866 - MER5A DNA MER1_type -28 161 81 247 250 0 0 chr11 76374614 76374666 -72408806 + L2 LINE L2 3221 3272 0 516 271 208 0 chr11 76374841 76375048 -72408424 - MIR SINE MIR 0 262 13 473 83 0 14 chr11 76375517 76375589 -72407883 + (TTCC)n Simple_repeat Simple_repeat 2 72 0 1716 189 0 23 chr11 76375597 76375904 -72407568 - AluJb SINE Alu -12 300 1 220 346 10 0 chr11 76376654 76376755 -72406717 + L2 LINE L2 2894 2995 -277 197 309 12 49 chr11 76376763 76376844 -72406628 + MIR SINE MIR 15 92 -170 351 241 0 0 chr11 76377313 76377400 -72406072 + LTR33 LTR ERVL 52 138 -383 420 251 35 35 chr11 76377405 76377576 -72405896 + LTR33 LTR ERVL 335 505 -16 1085 192 5 10 chr11 76377693 76377891 -72405581 + AluJo SINE Alu 116 312 0 219 167 24 0 chr11 76378920 76378962 -72404510 + (CA)n Simple_repeat Simple_repeat 2 44 0 370 345 10 20 chr11 76378963 76379163 -72404309 + L2 LINE L2 2894 3091 -181 273 198 0 18 chr11 76379264 76379336 -72404136 + MIR SINE MIR 52 122 -86 304 250 28 0 chr11 76379544 76379616 -72403856 - MIR3 SINE MIR -48 160 87 298 230 108 0 chr11 76380163 76380237 -72403235 - MIR3 SINE MIR -37 171 90 1396 170 9 94 chr11 76380324 76380665 -72402807 - AluSx SINE Alu 0 312 1 2473 91 0 3 chr11 76380984 76381292 -72402180 + AluSq SINE Alu 1 307 -6 348 341 11 51 chr11 76381936 76382112 -72401360 - L2 LINE L2 -96 3176 3008 425 282 36 0 chr11 76382129 76382239 -72401233 - MIR SINE MIR -78 184 71 192 353 24 12 chr11 76382897 76382982 -72400490 + MIR3 SINE MIR 111 196 -12 522 278 20 61 chr11 76384556 76384754 -72398718 + MIR3 SINE MIR 13 202 -6 183 309 24 24 chr11 76386061 76386145 -72397327 + MIR3 SINE MIR 112 195 -13 3376 147 34 52 chr11 76386305 76386429 -72397043 - L1MB4 LINE L1 -8 6172 6047 2101 107 17 7 chr11 76386429 76386718 -72396754 - AluSx SINE Alu -20 292 1 3376 147 34 52 chr11 76386718 76387349 -72396123 - L1MB4 LINE L1 -133 6047 5430 1475 166 59 62 chr11 76387381 76387700 -72395772 + AluJo SINE Alu 1 318 0 207 239 30 0 chr11 76389793 76389860 -72393612 + (CAAT)n Simple_repeat Simple_repeat 1 69 0 452 300 165 21 chr11 76389988 76390225 -72393247 - L3 LINE CR1 -13 1564 1294 863 122 0 19 chr11 76391020 76391176 -72392296 + L1MA9 LINE L1 6160 6312 0 232 214 57 14 chr11 76391224 76391364 -72392108 + (TTATA)n Simple_repeat Simple_repeat 1 146 0 2231 116 0 25 chr11 76391935 76392253 -72391219 - AluSx SINE Alu -2 310 1 772 299 47 28 chr11 76392561 76392956 -72390516 - MLT1K LTR MaLR -62 526 47 718 273 55 49 chr11 76393752 76393920 -72389552 + LTR33 LTR ERVL 33 199 -322 2059 89 4 0 chr11 76393920 76394178 -72389294 - AluSq SINE Alu -15 298 40 718 273 55 49 chr11 76394178 76394353 -72389119 + LTR33 LTR ERVL 199 378 -143 2035 121 10 26 chr11 76396126 76396433 -72387039 + AluJo SINE Alu 4 305 -7 22 0 0 0 chr11 76396523 76396545 -72386927 + GC_rich Low_complexity Low_complexity 1 22 0 1680 134 12 69 chr11 76396674 76396994 -72386478 - AluSx SINE Alu -10 302 1 3098 136 89 21 chr11 76396996 76397628 -72385844 - L1MB8 LINE L1 -306 5872 5207 1841 167 7 7 chr11 76397643 76397943 -72385529 - AluJb SINE Alu -9 303 4 504 324 76 5 chr11 76397996 76398181 -72385291 + MIR SINE MIR 23 220 -42 379 195 228 8 chr11 76398270 76398393 -72385079 + HsTC2 DNA Tc2 2 151 -1747 * 1071 177 174 17 chr11 76398381 76398743 -72384729 + HsTC2 DNA Tc2 1282 1876 -22 1790 146 6 70 chr11 76398751 76398944 -72384528 - AluSx SINE Alu -3 309 144 2262 75 0 39 chr11 76398944 76399251 -72384221 - AluY SINE Alu -16 295 1 1790 146 6 70 chr11 76399251 76399387 -72384085 - AluSx SINE Alu -168 144 1 630 190 183 7 chr11 76400090 76400232 -72383240 + FAM SINE Alu 1 167 -8 2355 57 20 20 chr11 76400313 76400613 -72382859 + AluY SINE Alu 1 300 -11 3510 111 8 19 chr11 76400677 76401210 -72382262 - MER1A DNA MER1_type 0 527 1 2328 98 0 7 chr11 76401315 76401622 -72381850 + AluSc SINE Alu 1 305 -4 300 274 49 29 chr11 76401771 76401873 -72381599 - MLT1L LTR MaLR -221 394 291 243 323 42 0 chr11 76401922 76402018 -72381454 - MLT1L LTR MaLR -312 303 204 574 164 32 90 chr11 76402493 76402682 -72380790 - AluSx SINE Alu -134 178 1 1871 178 7 0 chr11 76403434 76403732 -72379740 - AluSx SINE Alu -12 300 1 270 0 0 0 chr11 76404117 76404147 -72379325 + (T)n Simple_repeat Simple_repeat 1 30 0 2792 170 15 0 chr11 76404391 76404914 -72378558 - L1MB7 LINE L1 -192 5992 5462 198 71 0 0 chr11 76405686 76405714 -72377758 + (CA)n Simple_repeat Simple_repeat 2 29 0 1790 118 43 4 chr11 76405723 76406002 -72377470 - Tigger3(Golem) DNA MER2_type -1 3028 2739 1257 220 35 4 chr11 76406002 76406261 -72377211 + AluJo SINE Alu 1 267 -45 937 140 27 32 chr11 76406265 76406451 -72377021 - Tigger3(Golem) DNA MER2_type -276 2753 2569 2333 101 0 0 chr11 76406452 76406748 -72376724 - AluSg SINE Alu -14 296 1 1514 211 21 7 chr11 76407093 76407382 -72376090 - AluJo SINE Alu -16 296 4 1405 246 169 33 chr11 76407385 76408034 -72375438 - L1MEc LINE L1 -4342 2054 1301 2367 97 0 0 chr11 76408034 76408334 -72375138 - AluSx SINE Alu -12 300 1 1405 246 169 33 chr11 76408334 76408386 -72375086 - L1MEc LINE L1 -5095 1301 1257 3311 58 0 0 chr11 76408393 76408803 -72374669 - L1PA5 LINE L1 -8 6146 5737 381 42 0 0 chr11 76408803 76408851 -72374621 + L1P LINE L1 4934 4981 -1165 358 300 64 7 chr11 76409270 76409410 -72374062 - MER5B DNA MER1_type -29 149 2 833 253 11 5 chr11 76410875 76411061 -72372411 + MER5A DNA MER1_type 3 189 0 406 248 101 0 chr11 76411234 76411343 -72372129 - MIR SINE MIR -59 203 84 25 51 0 0 chr11 76411345 76411384 -72372088 + AT_rich Low_complexity Low_complexity 1 39 0 324 120 0 0 chr11 76411596 76411646 -72371826 + (TG)n Simple_repeat Simple_repeat 2 51 0 2100 140 3 0 chr11 76412053 76412361 -72371111 - AluSq SINE Alu -4 309 1 2051 121 19 47 chr11 76412581 76412945 -72370527 + THE1A LTR MaLR 2 355 0 226 111 0 0 chr11 76412998 76413034 -72370438 - L1ME LINE L1 -469 5652 5617 1571 166 72 22 chr11 76413062 76413340 -72370132 + AluJb SINE Alu 1 292 -20 1864 183 0 3 chr11 76413489 76413789 -72369683 - AluJb SINE Alu -13 299 1 23 0 0 0 chr11 76413816 76413839 -72369633 + AT_rich Low_complexity Low_complexity 1 23 0 534 239 284 0 chr11 76413890 76414091 -72369381 + MIR SINE MIR 4 261 -1 1121 181 17 98 chr11 76414196 76414467 -72369005 + L1ME2 LINE L1 5799 6036 -128 1998 150 0 7 chr11 76414467 76414774 -72368698 - AluSx SINE Alu -7 305 1 1121 181 17 98 chr11 76414774 76414861 -72368611 + L1ME2 LINE L1 6036 6128 -36 462 277 138 28 chr11 76415183 76415436 -72368036 + L1M4 LINE L1 2860 3140 -3006 745 280 54 17 chr11 76415441 76415680 -72367792 + MIR SINE MIR 2 249 -13 1695 169 19 16 chr11 76415973 76416281 -72367191 + AluJo SINE Alu 1 309 -3 508 289 120 21 chr11 76416394 76416778 -72366694 + L1M4 LINE L1 3625 4046 -2100 1996 159 9 6 chr11 76416827 76417173 -72366299 + MLT2C1 LTR ERVL 1 347 -50 570 80 270 0 chr11 76417357 76417457 -72366015 + AluY SINE Alu 4 130 -181 18294 152 67 18 chr11 76417457 76419218 -72364254 + L1MA3 LINE L1 177 1851 -5873 1537 157 0 4 chr11 76419218 76419453 -72364019 + AluJb SINE Alu 79 312 0 18294 152 67 18 chr11 76419453 76419844 -72363628 + L1MA3 LINE L1 1851 2222 -5502 2007 120 0 57 chr11 76419844 76420145 -72363327 + AluSx SINE Alu 1 284 -28 18294 152 67 18 chr11 76420145 76423939 -72359533 + L1MA3 LINE L1 2222 6589 -1135 2782 19 0 9 chr11 76423939 76424258 -72359214 + AluYb8 SINE Alu 1 316 -2 18294 152 67 18 chr11 76424258 76425452 -72358020 + L1MA3 LINE L1 6589 7724 0 1853 115 17 61 chr11 76425462 76425758 -72357714 + AluSc SINE Alu 1 283 -26 1470 193 63 0 chr11 76425866 76426182 -72357290 - MER7A DNA MER2_type 0 346 13 1547 168 8 0 chr11 76426374 76426630 -72356842 - AluJo SINE Alu 0 312 55 255 306 10 20 chr11 76426704 76426802 -72356670 + MIR3 SINE MIR 112 208 0 256 277 196 14 chr11 76427130 76427278 -72356194 - MIR SINE MIR -2 260 86 228 380 49 7 chr11 76427629 76427771 -72355701 + MIR SINE MIR 69 216 -46 1999 96 39 0 chr11 76427952 76428232 -72355240 + AluSx SINE Alu 1 291 -21 2021 115 31 11 chr11 76428249 76428535 -72354937 + AluSx SINE Alu 1 292 -20 215 357 0 48 chr11 76429302 76429386 -72354086 - L2 LINE L2 -181 3091 3012 946 230 80 71 chr11 76429551 76429916 -72353556 - L1ME1 LINE L1 -6 6160 5793 1147 150 141 23 chr11 76429928 76430274 -72353198 - MSTD LTR MaLR 0 396 1 1717 227 21 36 chr11 76430281 76430753 -72352719 - L1ME1 LINE L1 -387 5779 5315 768 213 27 16 chr11 76430765 76430953 -72352519 + MLT2D LTR ERVL 225 414 0 384 198 4 2 chr11 76430954 76431048 -72352424 - L1MB7 LINE L1 -276 5902 5808 1939 138 11 0 chr11 76431078 76431353 -72352119 + AluJo SINE Alu 5 282 -30 246 62 0 0 chr11 76431356 76431388 -72352084 + (CAA)n Simple_repeat Simple_repeat 2 33 0 180 338 56 0 chr11 76431477 76431548 -72351924 - MIR3 SINE MIR -48 160 86 311 233 273 76 chr11 76432007 76432148 -72351324 + MIR SINE MIR 19 202 -60 2280 84 3 0 chr11 76432148 76432476 -72350996 + AluSp SINE Alu 1 329 0 311 233 273 76 chr11 76432476 76432505 -72350967 + MIR SINE MIR 202 224 -38 1867 161 49 15 chr11 76433170 76433521 -72349951 - L1MB7 LINE L1 -348 5836 5469 183 42 0 0 chr11 76433521 76433545 -72349927 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1867 161 49 15 chr11 76433545 76433584 -72349888 - L1MB7 LINE L1 -715 5469 5433 1568 206 3 10 chr11 76433586 76433878 -72349594 - AluJo SINE Alu -20 292 3 1287 220 29 6 chr11 76433879 76434229 -72349243 - L1ME1 LINE L1 -985 5161 4804 2407 249 66 44 chr11 76434232 76434837 -72348635 + L1M4 LINE L1 2614 3204 -2942 561 207 25 33 chr11 76434837 76434958 -72348514 + FLAM_A SINE Alu 1 120 -13 2407 249 66 44 chr11 76434958 76435519 -72347953 + L1M4 LINE L1 3204 3806 -2340 1613 150 8 26 chr11 76435520 76435786 -72347686 + AluJb SINE Alu 18 278 -34 245 122 24 0 chr11 76435886 76435927 -72347545 - Alu SINE Alu -260 42 1 380 264 50 67 chr11 76435939 76436299 -72347173 - L1MB7 LINE L1 -870 5276 4923 509 253 140 24 chr11 76436526 76436819 -72346653 - L1MB7 LINE L1 -1290 4856 4530 533 206 50 35 chr11 76438779 76438920 -72344552 - MIR SINE MIR -10 252 110 2223 104 0 36 chr11 76438974 76439283 -72344189 - AluSc SINE Alu -11 298 1 391 299 228 34 chr11 76439283 76439629 -72343843 + L3 LINE CR1 1090 1508 -69 201 93 56 19 chr11 76440069 76440123 -72343349 + (TATAA)n Simple_repeat Simple_repeat 2 57 0 24 32 0 0 chr11 76440302 76440333 -72343139 + AT_rich Low_complexity Low_complexity 1 31 0 767 155 11 22 chr11 76440494 76440675 -72342797 + CT-rich Low_complexity Low_complexity 2 180 0 1642 170 87 3 chr11 76440687 76440975 -72342497 - AluJb SINE Alu 0 312 1 2049 238 72 42 chr11 76441329 76441514 -72341958 - L1MC4a LINE L1 -1667 6141 5963 1727 128 0 43 chr11 76441514 76441796 -72341676 - AluSx SINE Alu -2 310 41 2049 238 72 42 chr11 76441796 76442393 -72341079 - L1MC4a LINE L1 -1845 5963 5328 2055 135 64 0 chr11 76442393 76442720 -72340752 - MER7A DNA MER2_type 0 346 1 2049 238 72 42 chr11 76442720 76442797 -72340675 - L1MC4a LINE L1 -2480 5328 5255 1062 217 120 43 chr11 76442871 76443239 -72340233 - MSTD LTR MaLR 0 396 1 1931 159 13 7 chr11 76443303 76443612 -72339860 - AluJb SINE Alu -1 311 1 2071 143 0 0 chr11 76444018 76444312 -72339160 - AluSx SINE Alu -18 294 1 360 230 0 0 chr11 76444426 76444500 -72338972 - MIR SINE MIR -107 155 82 2419 88 0 0 chr11 76444504 76444799 -72338673 - AluSx SINE Alu -17 295 1 817 169 25 12 chr11 76444963 76445123 -72338349 - L1MC/D LINE L1 -2328 5480 5319 613 281 30 0 chr11 76445663 76445827 -72337645 - MIR SINE MIR -84 178 10 432 309 32 0 chr11 76445990 76446116 -72337356 - L2 LINE L2 -4 3309 3180 294 327 124 0 chr11 76446404 76446557 -72336915 - L2 LINE L2 -542 2772 2601 515 248 64 0 chr11 76446643 76446768 -72336704 - L2 LINE L2 -4 3268 3136 1669 189 3 19 chr11 76447605 76447918 -72335554 - AluJb SINE Alu -4 308 1 1072 194 52 20 chr11 76448251 76448503 -72334969 + LTR48B LTR ERV1 383 642 -2 216 97 0 0 chr11 76448644 76448675 -72334797 + (TG)n Simple_repeat Simple_repeat 2 32 0 246 258 45 0 chr11 76448735 76448824 -72334648 + L1MC4 LINE L1 6614 6706 -1336 2343 107 3 3 chr11 76448824 76449133 -72334339 - AluSg SINE Alu -1 309 1 223 288 23 0 chr11 76449198 76449330 -72334142 + (TA)n Simple_repeat Simple_repeat 2 136 0 239 325 0 12 chr11 76449577 76449657 -72333815 - 5S rRNA rRNA 0 121 43 304 273 182 0 chr11 76450179 76450300 -72333172 + MIR SINE MIR 65 207 -55 370 292 22 0 chr11 76450787 76450924 -72332548 - L1ME4a LINE L1 0 6121 5982 721 301 94 20 chr11 76451460 76451948 -72331524 - L3 LINE CR1 -376 1201 618 418 321 91 25 chr11 76452001 76452406 -72331066 + L1PA13 LINE L1 5587 6018 -145 * 2099 144 68 8 chr11 76452057 76452453 -72331019 + L1MB5 LINE L1 5643 6062 -112 641 148 0 0 chr11 76452454 76452555 -72330917 + FLAM_C SINE Alu 5 105 -38 763 85 0 0 chr11 76452666 76452772 -72330700 + L1MB5 LINE L1 6061 6166 -8 2566 206 42 2 chr11 76453044 76453597 -72329875 + L1MC3 LINE L1 7204 7778 -7 24 0 0 0 chr11 76453605 76453629 -72329843 + AT_rich Low_complexity Low_complexity 1 24 0 2180 119 7 0 chr11 76453921 76454214 -72329258 + AluSx SINE Alu 1 295 -17 330 262 159 8 chr11 76454546 76454672 -72328800 + MIR SINE MIR 8 152 -110 2326 113 0 0 chr11 76454785 76455086 -72328386 + AluSx SINE Alu 7 307 -5 253 297 0 0 chr11 76455813 76455887 -72327585 - MIR SINE MIR 0 262 189 244 229 21 0 chr11 76456809 76456857 -72326615 + L2 LINE L2 3199 3247 -25 232 234 75 53 chr11 76456831 76456925 -72326547 - L2 LINE L2 -38 3234 3139 * 239 284 27 0 chr11 76458233 76458307 -72325165 + L2 LINE L2 3122 3197 -75 747 194 63 11 chr11 76458853 76459028 -72324444 - MER53 DNA DNA -5 184 1 234 296 0 45 chr11 76459127 76459215 -72324257 - MIR3 SINE MIR -13 195 112 2396 101 0 3 chr11 76459655 76459962 -72323510 + AluSx SINE Alu 1 306 -6 944 208 184 27 chr11 76460078 76460761 -72322711 - L2 LINE L2 -78 3235 2446 205 246 108 15 chr11 76460757 76460822 -72322650 - MIR SINE MIR -67 141 71 * 475 238 111 17 chr11 76461747 76461919 -72321553 - HAL1 LINE L1 -295 2212 2025 2751 129 5 21 chr11 76462005 76462439 -72321033 + Tigger2a DNA MER2_type 7 433 -1 1581 249 51 68 chr11 76462451 76463262 -72320210 + L1MC5 LINE L1 6403 7206 -755 1019 174 97 17 chr11 76463262 76463550 -72319922 + MER33 DNA MER1_type 1 311 -13 599 189 76 105 chr11 76463592 76463897 -72319575 + L1MC5 LINE L1 7216 7495 -466 1793 154 6 44 chr11 76464390 76464708 -72318764 - AluJo SINE Alu -6 306 1 1021 182 66 0 chr11 76465301 76465499 -72317973 + MLT2B1 LTR ERVL 1 211 -309 551 148 9 28 chr11 76465609 76465717 -72317755 - FLAM_C SINE Alu -37 106 1 238 132 0 0 chr11 76465717 76465755 -72317717 - L1MA7 LINE L1 -46 6245 6208 558 105 0 0 chr11 76466414 76466514 -72316958 + AluSg/x SINE Alu 206 305 0 491 274 87 10 chr11 76466567 76466775 -72316697 - MIR SINE MIR -32 230 7 377 246 57 16 chr11 76466854 76466976 -72316496 + MIR SINE MIR 61 187 -75 1543 128 82 64 chr11 76467076 76467223 -72316249 - AluJo SINE Alu -26 286 130 2068 123 3 22 chr11 76467223 76467539 -72315933 - AluSg SINE Alu 0 310 1 1543 128 82 64 chr11 76467539 76467672 -72315800 - AluJo SINE Alu -182 130 1 260 167 74 0 chr11 76467727 76467781 -72315691 - L1ME LINE L1 -339 5782 5725 2193 94 0 27 chr11 76467990 76468311 -72315161 - AluSq SINE Alu 0 313 1 250 327 37 9 chr11 76468398 76468505 -72314967 - L3 LINE CR1 -500 1077 968 2228 124 0 3 chr11 76468507 76468813 -72314659 + AluSg SINE Alu 1 305 -5 663 242 139 4 chr11 76470177 76470490 -72312982 + LTR16C LTR ERVL 97 489 -2 321 286 91 57 chr11 76470492 76470565 -72312907 + L2 LINE L2 2468 2537 -735 1781 138 0 67 chr11 76470565 76470877 -72312595 + AluJb SINE Alu 1 291 -21 321 286 91 57 chr11 76470877 76471324 -72312148 + L2 LINE L2 2537 3008 -264 270 243 62 7 chr11 76471975 76472119 -72311353 - L1ME3A LINE L1 -238 5932 5781 2283 86 7 0 chr11 76472145 76472424 -72311048 + AluSc SINE Alu 17 297 -12 691 198 119 11 chr11 76472592 76472769 -72310703 - MER3 DNA MER1_type 0 209 14 2280 94 3 0 chr11 76473055 76473369 -72310103 + AluSx SINE Alu 6 312 0 302 299 131 0 chr11 76473372 76473509 -72309963 - L1ME3A LINE L1 -457 5713 5559 451 186 157 0 chr11 76473731 76473833 -72309639 + MER3 DNA MER1_type 14 131 -78 602 256 29 33 chr11 76473850 76474262 -72309210 - L1ME3A LINE L1 -747 5399 5074 760 275 63 39 chr11 76474650 76475014 -72308458 + L2 LINE L2 2921 3293 -20 186 311 0 0 chr11 76475170 76475215 -72308257 - MIR SINE MIR -7 255 211 461 200 80 0 chr11 76475268 76475368 -72308104 + MIR SINE MIR 76 183 -79 1071 192 50 29 chr11 76475412 76475652 -72307820 + MIR SINE MIR 18 262 0 219 220 17 136 chr11 76475669 76475787 -72307685 - MIR3 SINE MIR -2 206 103 555 274 61 0 chr11 76476841 76477005 -72306467 + MIR SINE MIR 63 236 -26 1716 161 17 17 chr11 76479341 76479632 -72303840 + AluJo SINE Alu 1 291 -21 182 262 49 33 chr11 76479937 76479998 -72303474 - MIR SINE MIR -57 151 90 314 206 43 81 chr11 76481125 76481271 -72302201 - MIR SINE MIR -58 150 51 395 303 85 32 chr11 76481924 76482112 -72301360 + L2 LINE L2 3103 3300 -13 2146 162 39 73 chr11 76482305 76482812 -72300660 - LTR2B LTR ERV1 0 490 1 199 320 127 13 chr11 76483034 76483184 -72300288 - MIR SINE MIR -1 261 95 297 179 38 66 chr11 76483225 76483331 -72300141 + MIR SINE MIR 33 135 -127 267 191 0 17 chr11 76483801 76483873 -72299599 + MIR SINE MIR 94 147 -61 1407 176 4 24 chr11 76484829 76485079 -72298393 - AluJo SINE Alu -6 306 62 321 358 37 18 chr11 76485080 76485260 -72298212 - MIR SINE MIR -63 145 10 958 118 15 0 chr11 76485435 76485571 -72297901 + AluSp/q SINE Alu 174 311 -2 220 276 0 17 chr11 76485613 76485671 -72297801 - MIR SINE MIR -63 145 89 185 220 0 85 chr11 76486306 76486365 -72297107 + L3 LINE CR1 1342 1395 -182 586 292 58 9 chr11 76486830 76487056 -72296416 - MIR SINE MIR -13 249 13 3921 160 25 4 chr11 76487139 76487883 -72295589 + L1MB7 LINE L1 5406 6165 -19 2049 103 89 0 chr11 76488120 76488391 -72295081 - AluSg SINE Alu -15 295 1 2122 209 50 32 chr11 76488448 76488951 -72294521 - LTR40a LTR ERVL -7 512 1 254 50 25 0 chr11 76488978 76489018 -72294454 + (TTTG)n Simple_repeat Simple_repeat 4 44 0 4583 153 23 37 chr11 76489019 76489150 -72294322 - L1MB4 LINE L1 -2 6178 6047 351 0 0 0 chr11 76489150 76489189 -72294283 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2019 106 44 15 chr11 76489189 76489463 -72294009 - AluSx SINE Alu -30 282 1 4583 153 23 37 chr11 76489463 76490428 -72293044 - L1MB4 LINE L1 -131 6049 5103 403 258 149 10 chr11 76490434 76490628 -72292844 - MLT1K LTR MaLR -5 583 363 612 238 150 48 chr11 76491154 76491381 -72292091 + MIR SINE MIR 12 261 -1 234 335 140 17 chr11 76493521 76493700 -72289772 + L2 LINE L2 2977 3177 -95 195 42 0 0 chr11 76493766 76493790 -72289682 + (GGGA)n Simple_repeat Simple_repeat 2 25 0 305 301 171 13 chr11 76493874 76494064 -72289408 - MIR SINE MIR -21 241 26 919 243 35 60 chr11 76495749 76496066 -72287406 - L2 LINE L2 -1 3312 3004 1986 127 0 10 chr11 76496081 76496372 -72287100 - AluJb SINE Alu -24 288 1 210 315 87 0 chr11 76496602 76496694 -72286778 + MIR SINE MIR 71 170 -92 493 298 43 64 chr11 76496903 76497185 -72286287 + L3 LINE CR1 1298 1573 -4 229 280 70 77 chr11 76497534 76497677 -72285795 - L3 LINE CR1 -886 691 550 261 140 40 0 chr11 76497884 76497934 -72285538 + MIR SINE MIR 88 139 -123 634 284 89 71 chr11 76497971 76498534 -72284938 - MLT1K LTR MaLR -6 582 10 431 260 179 0 chr11 76499068 76499191 -72284281 + MIR SINE MIR 105 249 -13 350 236 135 70 chr11 76499711 76499900 -72283572 - MIR SINE MIR -83 125 1 303 289 36 0 chr11 76500782 76500865 -72282607 + MIR SINE MIR 68 153 -109 2111 92 4 4 chr11 76500938 76501219 -72282253 + AluSp SINE Alu 1 281 -32 904 90 12 24 chr11 76501219 76501385 -72282087 + (GAAA)n Simple_repeat Simple_repeat 2 165 0 415 169 0 0 chr11 76501395 76501460 -72282012 + AluJ/FLAM SINE Alu 1 65 -247 236 335 27 66 chr11 76501503 76501804 -72281668 + L2 LINE L2 2827 3115 -157 262 267 30 40 chr11 76502614 76502715 -72280757 + MIR3 SINE MIR 109 208 0 276 310 80 9 chr11 76502809 76502922 -72280550 - MIR3 SINE MIR -86 122 2 204 344 10 0 chr11 76503335 76503431 -72280041 + (TGGA)n Simple_repeat Simple_repeat 4 100 0 205 247 71 47 chr11 76503445 76503530 -72279942 - MIR3 SINE MIR -16 192 106 693 249 36 0 chr11 76505809 76505988 -72277484 - MIR SINE MIR -63 145 2 283 224 37 93 chr11 76505988 76506094 -72277378 + MIR3 SINE MIR 78 177 -31 286 280 160 16 chr11 76506297 76506422 -72277050 - MIR SINE MIR -108 154 12 219 348 22 0 chr11 76506472 76506561 -72276911 + MIR SINE MIR 50 140 -68 483 338 69 28 chr11 76508680 76508970 -72274502 - L2 LINE L2 -1 3271 2970 1516 184 64 3 chr11 76509218 76509501 -72273971 + AluJo SINE Alu 1 300 -2 2113 128 0 3 chr11 76509502 76509807 -72273665 + AluSx SINE Alu 4 307 -5 2048 146 0 3 chr11 76509962 76510264 -72273208 + AluSx SINE Alu 1 301 -11 513 0 0 0 chr11 76510686 76510743 -72272729 + (TG)n Simple_repeat Simple_repeat 2 58 0 477 229 63 86 chr11 76511068 76511243 -72272229 + MIR SINE MIR 82 252 -10 295 308 0 0 chr11 76511278 76511356 -72272116 - MIR SINE MIR -139 123 46 207 232 80 98 chr11 76512104 76512216 -72271256 + MIR SINE MIR 34 143 -65 290 267 42 67 chr11 76512314 76512434 -72271038 - L2 LINE L2 -1 3271 3155 215 375 102 0 chr11 76512597 76512773 -72270699 - L2 LINE L2 -213 3059 2866 322 259 9 69 chr11 76514130 76514246 -72269226 - MIR3 SINE MIR -27 181 73 771 243 57 0 chr11 76514486 76514663 -72268809 + MIR SINE MIR 38 224 -38 304 205 60 0 chr11 76515004 76515087 -72268385 + MIR SINE MIR 47 134 -128 1524 229 59 5 chr11 76515131 76515478 -72267994 - MLT1G1 LTR MaLR -182 413 41 1776 125 78 0 chr11 76515478 76515759 -72267713 + AluJo SINE Alu 1 303 -9 1524 229 59 5 chr11 76515759 76515800 -72267672 - MLT1G1 LTR MaLR -554 41 4 1580 141 0 4 chr11 76515820 76516054 -72267418 - AluJb SINE Alu -79 233 1 201 291 18 0 chr11 76516490 76516545 -72266927 + G-rich Low_complexity Low_complexity 5 60 0 527 305 0 0 chr11 76516563 76516691 -72266781 - MIR SINE MIR -126 136 9 501 279 130 23 chr11 76517100 76517315 -72266157 + MIR SINE MIR 18 255 -7 349 306 119 12 chr11 76517466 76517626 -72265846 + L2 LINE L2 3136 3312 -1 180 190 20 50 chr11 76517684 76517784 -72265688 + (TTCA)n Simple_repeat Simple_repeat 1 97 0 441 297 105 18 chr11 76519562 76519630 -72263842 - L2 LINE L2 -197 3075 3014 2182 63 3 70 chr11 76519630 76519946 -72263526 - AluSp SINE Alu -18 295 1 441 297 105 18 chr11 76519946 76520096 -72263376 - L2 LINE L2 -258 3014 2838 236 328 156 0 chr11 76524189 76524311 -72259161 + MIR3 SINE MIR 43 183 -25 273 330 45 0 chr11 76525532 76525644 -72257828 + MIR3 SINE MIR 40 156 -52 343 290 92 8 chr11 76526204 76526335 -72257137 + MIR3 SINE MIR 33 174 -34 274 191 0 0 chr11 76526793 76526840 -72256632 - MIR SINE MIR 0 262 216 263 260 7 103 chr11 76527084 76527230 -72256242 - MIR3 SINE MIR -74 134 3 224 348 167 7 chr11 76527882 76528020 -72255452 - L2 LINE L2 -209 3063 2904 1176 245 146 8 chr11 76528074 76528757 -72254715 - L2 LINE L2 0 3313 2556 261 250 39 87 chr11 76529021 76529125 -72254347 - L3 LINE CR1 -71 1506 1408 261 291 147 0 chr11 76529127 76529272 -72254200 - MIR SINE MIR -70 192 24 204 321 107 0 chr11 76529735 76529819 -72253653 + MIR SINE MIR 32 124 -84 1872 151 23 0 chr11 76530153 76530458 -72253014 + AluJo SINE Alu 1 312 0 1859 206 82 21 chr11 76530579 76530861 -72252611 - MLT1D LTR MaLR 0 505 181 2401 70 0 3 chr11 76530861 76531161 -72252311 - AluSc SINE Alu -10 299 1 1859 206 82 21 chr11 76531161 76531354 -72252118 - MLT1D LTR MaLR -324 181 1 226 247 227 21 chr11 76531484 76531581 -72251891 - L2 LINE L2 0 3272 3156 205 150 0 0 chr11 76532140 76532154 -72251318 + (T)n Simple_repeat Simple_repeat 1 14 -26 1870 80 53 40 chr11 76532154 76532453 -72251019 + AluSg SINE Alu 1 303 -7 205 150 0 0 chr11 76532453 76532478 -72250994 + (T)n Simple_repeat Simple_repeat 13 40 0 288 285 77 2 chr11 76533828 76533944 -72249528 - MIR SINE MIR -62 146 28 471 277 40 37 chr11 76533972 76534177 -72249295 + MIR SINE MIR 33 237 -25 431 252 76 0 chr11 76535265 76535396 -72248076 + MIR SINE MIR 112 252 -10 343 307 73 7 chr11 76535397 76535547 -72247925 + MIR SINE MIR 18 177 -85 420 258 204 5 chr11 76536433 76536619 -72246853 - L2 LINE L2 -22 3250 3028 207 364 13 0 chr11 76536820 76536897 -72246575 - L2 LINE L2 -557 2757 2680 315 288 124 20 chr11 76537344 76537497 -72245975 - L2 LINE L2 0 3272 3104 1533 141 95 43 chr11 76537530 76537900 -72245572 + L1MB3 LINE L1 5786 6174 -9 466 293 49 5 chr11 76537951 76538156 -72245316 - L2 LINE L2 -188 3084 2871 240 275 125 25 chr11 76538305 76538425 -72245047 + MIR SINE MIR 34 165 -97 2089 102 0 3 chr11 76538447 76538760 -72244712 + AluSx SINE Alu 1 312 0 645 265 77 5 chr11 76539032 76539228 -72244244 + MIR SINE MIR 16 225 -37 481 218 73 73 chr11 76539255 76539366 -72244106 - MIR SINE MIR -72 190 77 807 253 110 17 chr11 76539366 76539603 -72243869 - MIR SINE MIR -2 260 2 481 218 73 73 chr11 76539603 76539670 -72243802 - MIR SINE MIR -184 78 12 509 268 16 68 chr11 76540680 76540736 -72242736 + L2 LINE L2 3074 3131 -182 1786 107 4 8 chr11 76540736 76540997 -72242475 - AluSx SINE Alu -52 260 1 509 268 16 68 chr11 76540997 76541029 -72242443 + L2 LINE L2 3131 3163 -150 423 204 191 13 chr11 76541029 76541155 -72242317 + MER104 DNA MER2_type 1 160 -1738 2125 116 0 3 chr11 76541155 76541447 -72242025 + AluSx SINE Alu 1 291 -21 423 204 191 13 chr11 76541447 76541472 -72242000 + MER104 DNA MER2_type 160 179 -1 509 268 16 68 chr11 76541472 76541632 -72241840 + L2 LINE L2 3163 3310 -3 275 237 76 76 chr11 76541687 76541818 -72241654 - L2 LINE L2 -1 3271 3141 513 313 154 0 chr11 76542606 76542807 -72240665 - MIR SINE MIR -29 233 2 2337 88 0 7 chr11 76543548 76543853 -72239619 + AluSg SINE Alu 1 303 -7 252 297 0 0 chr11 76544579 76544653 -72238819 - MIR SINE MIR 0 262 189 249 265 0 0 chr11 76545581 76545630 -72237842 + L2 LINE L2 3247 3295 -18 241 245 75 53 chr11 76545597 76545691 -72237781 - L2 LINE L2 -38 3234 3139 * 180 250 23 0 chr11 76546863 76546907 -72236565 - L2 LINE L2 -2 3270 3226 262 333 38 0 chr11 76547000 76547105 -72236367 + L2 LINE L2 3122 3230 -42 686 200 63 11 chr11 76547620 76547795 -72235677 - MER53 DNA DNA -5 184 1 257 296 0 45 chr11 76547894 76547982 -72235490 - MIR3 SINE MIR -13 195 112 2322 104 0 0 chr11 76548421 76548729 -72234743 + AluSx SINE Alu 1 308 -4 226 344 80 0 chr11 76549448 76549573 -72233899 + MIR3 SINE MIR 67 201 -7 726 348 86 9 chr11 76549837 76550375 -72233097 + L2 LINE L2 2286 2864 -450 1805 104 32 81 chr11 76551505 76551814 -72231658 + AluSx SINE Alu 1 294 -18 1535 174 3 59 chr11 76552761 76553082 -72230390 + AluJo SINE Alu 1 303 -9 1208 113 0 0 chr11 76553086 76553254 -72230218 + AluY SINE Alu 1 168 -143 2125 116 0 3 chr11 76553439 76553731 -72229741 + AluSx SINE Alu 1 291 -21 526 254 48 18 chr11 76553751 76553916 -72229556 + L2 LINE L2 3141 3310 -3 275 237 76 76 chr11 76553971 76554102 -72229370 - L2 LINE L2 -1 3271 3141 513 313 154 0 chr11 76554891 76555092 -72228380 - MIR SINE MIR -29 233 2 2312 87 0 7 chr11 76555833 76556133 -72227339 + AluSg SINE Alu 1 298 -12 262 352 0 33 chr11 76556136 76556227 -72227245 - MIR SINE MIR -88 120 33 281 294 88 55 chr11 76556421 76556659 -72226813 - L2 LINE L2 -217 3055 2810 231 36 0 0 chr11 76557765 76557793 -72225679 + (CACCC)n Simple_repeat Simple_repeat 3 30 0 245 254 45 36 chr11 76558265 76558375 -72225097 + MIR SINE MIR 43 153 -55 926 223 102 4 chr11 76559589 76559854 -72223618 - MLT1A1 LTR MaLR -3 362 72 1936 114 3 39 chr11 76559992 76560300 -72223172 - AluSc SINE Alu -7 302 6 387 213 0 0 chr11 76560308 76560388 -72223084 - MLT1A1 LTR MaLR -285 80 1 467 200 12 0 chr11 76563125 76563205 -72220267 + AluJ/FLAM SINE Alu 6 86 -226 1675 164 14 7 chr11 76563306 76563593 -72219879 - AluJb SINE Alu -23 289 1 220 158 0 0 chr11 76563621 76563659 -72219813 + MIR SINE MIR 215 252 -10 403 274 108 52 chr11 76564066 76564278 -72219194 + MIR SINE MIR 28 251 -11 343 198 76 102 chr11 76564970 76565129 -72218343 - MIR3 SINE MIR -9 199 45 213 267 225 0 chr11 76565828 76565948 -72217524 + MIR3 SINE MIR 1 147 -61 208 307 0 45 chr11 76566561 76566649 -72216823 + CT-rich Low_complexity Low_complexity 3 86 0 204 301 21 21 chr11 76567177 76567270 -72216202 - MIR SINE MIR -133 129 37 235 267 0 0 chr11 76567270 76567315 -72216157 - MIR SINE MIR -195 67 23 230 200 0 0 chr11 76567444 76567489 -72215983 + L2 LINE L2 3262 3306 -7 265 330 126 0 chr11 76568785 76568976 -72214496 - L2 LINE L2 -173 3099 2885 2014 92 3 54 chr11 76569067 76569382 -72214090 + AluSq SINE Alu 15 313 0 276 332 85 30 chr11 76570206 76570436 -72213036 - L2 LINE L2 -262 3010 2767 181 269 97 21 chr11 76570444 76570537 -72212935 + MIR SINE MIR 7 106 -156 375 272 24 24 chr11 76570544 76570669 -72212803 + MIR SINE MIR 79 203 -59 183 306 153 0 chr11 76570994 76571079 -72212393 - MIR3 SINE MIR -35 173 76 35 0 0 0 chr11 76571654 76571689 -72211783 + AT_rich Low_complexity Low_complexity 1 35 0 306 301 158 14 chr11 76571805 76571951 -72211521 - L1MC4a LINE L1 -1817 5991 5825 315 313 0 54 chr11 76572073 76572096 -72211376 - L1MC4a LINE L1 -2420 5388 5365 2243 110 10 0 chr11 76572096 76572406 -72211066 - AluSq SINE Alu 0 313 1 315 313 0 54 chr11 76572406 76572494 -72210978 - L1MC4a LINE L1 -2443 5365 5283 295 207 0 0 chr11 76572547 76572605 -72210867 - MIR SINE MIR -66 142 85 286 263 11 63 chr11 76572853 76572948 -72210524 + L2 LINE L2 3182 3271 -1 386 194 42 160 chr11 76573799 76573840 -72209632 - MIR SINE MIR -130 132 88 2121 115 3 3 chr11 76573840 76574145 -72209327 + AluSq SINE Alu 1 305 -8 2160 109 3 10 chr11 76574147 76574458 -72209014 + AluSc SINE Alu 1 309 0 386 194 42 160 chr11 76574458 76574557 -72208915 - MIR SINE MIR -175 87 6 315 146 0 0 chr11 76575369 76575424 -72208048 + (T)n Simple_repeat Simple_repeat 1 55 0 199 268 39 102 chr11 76575575 76575702 -72207770 - MIR3 SINE MIR -12 196 78 316 325 30 44 chr11 76575747 76575950 -72207522 + L3 LINE CR1 1271 1470 -107 2206 114 3 0 chr11 76577236 76577544 -72205928 - AluSx SINE Alu -3 309 1 490 218 97 0 chr11 76577548 76577713 -72205759 - L1MC/D LINE L1 -1987 5821 5641 778 263 67 26 chr11 76577748 76578325 -72205147 - L1MC/D LINE L1 -743 5403 4943 273 250 0 0 chr11 76578522 76578582 -72204890 + MIR SINE MIR 82 141 -67 190 250 120 76 chr11 76578987 76579079 -72204393 + MIR3 SINE MIR 61 156 -52 260 256 51 0 chr11 76579130 76579208 -72204264 - MIR3 SINE MIR -21 187 106 408 293 55 18 chr11 76580753 76580917 -72202555 + MIR3 SINE MIR 31 200 -8 245 338 0 0 chr11 76581120 76581191 -72202281 + MIR SINE MIR 84 154 -108 458 272 129 0 chr11 76581838 76581985 -72201487 + MIR3 SINE MIR 36 201 -7 198 0 0 0 chr11 76582932 76582954 -72200518 + (TG)n Simple_repeat Simple_repeat 1 22 0 1951 127 0 23 chr11 76583260 76583567 -72199905 + AluJb SINE Alu 2 301 -11 2207 92 0 7 chr11 76583570 76583865 -72199607 + AluSq SINE Alu 1 293 -20 194 61 0 30 chr11 76585750 76585783 -72197689 + (TTTTG)n Simple_repeat Simple_repeat 3 34 0 298 219 156 0 chr11 76586035 76586141 -72197331 + MIR3 SINE MIR 68 158 -50 240 234 62 0 chr11 76586208 76586272 -72197200 - MER5A DNA MER1_type -78 111 44 551 303 26 7 chr11 76586850 76587005 -72196467 + MIR SINE MIR 20 177 -85 424 187 215 0 chr11 76587513 76587620 -72195852 + MER5B DNA MER1_type 1 130 -48 593 260 125 0 chr11 76587625 76587825 -72195647 - L1ME3A LINE L1 -5 6165 5941 1093 128 43 0 chr11 76587921 76588109 -72195363 + AluSg/x SINE Alu 83 278 -32 705 135 9 3 chr11 76589434 76589670 -72193802 + AluJb SINE Alu 1 297 -15 291 331 81 27 chr11 76589685 76589833 -72193639 + MIR3 SINE MIR 22 177 -31 279 270 54 47 chr11 76590201 76590349 -72193123 - MIR3 SINE MIR -4 204 56 2212 94 0 26 chr11 76590609 76590917 -72192555 + AluSx SINE Alu 1 300 -12 357 224 0 0 chr11 76591532 76591630 -72191842 + MIR SINE MIR 20 118 -90 199 268 39 102 chr11 76592675 76592802 -72190670 + MIR3 SINE MIR 78 196 -12 195 221 0 0 chr11 76592863 76592949 -72190523 + (GGGTG)n Simple_repeat Simple_repeat 3 88 0 1921 129 40 6 chr11 76593686 76594034 -72189438 + MER47A DNA MER2_type 7 366 0 226 297 14 27 chr11 76595052 76595126 -72188346 - MIR3 SINE MIR -46 162 90 290 280 175 14 chr11 76596587 76596730 -72186742 - MIR3 SINE MIR -38 170 5 505 324 30 1 chr11 76597544 76597712 -72185760 - MIR SINE MIR -68 140 4 192 140 23 45 chr11 76598228 76598272 -72185200 + MIR SINE MIR 102 143 -68 287 299 94 0 chr11 76599163 76599290 -72184182 + MIR3 SINE MIR 3 141 -67 199 323 0 0 chr11 76599966 76600028 -72183444 - MIR SINE MIR -94 168 107 288 250 24 12 chr11 76600033 76600117 -72183355 - MIR SINE MIR -20 242 158 221 256 153 29 chr11 76600418 76600555 -72182917 - L2 LINE L2 -213 3059 2906 275 267 105 29 chr11 76601092 76601197 -72182275 - L2 LINE L2 -43 3270 3158 1769 153 20 17 chr11 76601300 76601600 -72181872 + AluJo SINE Alu 1 301 -11 284 222 167 11 chr11 76601638 76601728 -72181744 - MIR SINE MIR -57 151 48 2275 87 3 0 chr11 76602499 76602797 -72180675 - AluSg SINE Alu -8 302 4 370 308 142 0 chr11 76603737 76603906 -72179566 + L2 LINE L2 3102 3294 -19 1487 115 127 19 chr11 76607081 76607341 -72176131 + AluJo SINE Alu 1 288 -24 198 291 68 19 chr11 76610541 76610644 -72172828 + MIR SINE MIR 63 170 -92 212 221 26 26 chr11 76611081 76611158 -72172314 - L2 LINE L2 -210 3062 2986 1195 173 148 3 chr11 76612396 76612679 -72170793 - MER33 DNA MER1_type 0 324 1 1320 95 105 9 chr11 76612936 76613146 -72170326 - MER30 DNA MER1_type 0 230 1 1936 129 30 3 chr11 76615500 76615803 -72167669 + AluJb SINE Alu 2 312 0 498 297 134 17 chr11 76615834 76616066 -72167406 + MIR SINE MIR 4 262 0 221 64 43 64 chr11 76616465 76616512 -72166960 + (CAAAA)n Simple_repeat Simple_repeat 1 46 0 288 0 0 0 chr11 76616636 76616668 -72166804 + (TTA)n Simple_repeat Simple_repeat 2 33 0 334 216 36 18 chr11 76618559 76618665 -72164807 + MIR SINE MIR 71 180 -28 349 254 184 9 chr11 76619533 76619647 -72163825 + MIR SINE MIR 40 173 -89 204 40 0 0 chr11 76619992 76620017 -72163455 + (TTA)n Simple_repeat Simple_repeat 2 26 0 514 211 77 9 chr11 76621018 76621165 -72162307 + MIR3 SINE MIR 48 205 -3 219 288 0 0 chr11 76621624 76621683 -72161789 + C-rich Low_complexity Low_complexity 1 59 0 187 343 193 0 chr11 76622674 76622840 -72160632 + MIR SINE MIR 10 207 -55 214 339 37 98 chr11 76623272 76623429 -72160043 + L2 LINE L2 2932 3058 -214 2178 99 3 0 chr11 76623429 76623723 -72159749 - AluSx SINE Alu -14 298 4 214 339 37 98 chr11 76623723 76623913 -72159559 + L2 LINE L2 3058 3258 -14 1842 163 3 7 chr11 76624052 76624353 -72159119 + AluJb SINE Alu 1 300 -12 253 323 102 0 chr11 76624471 76624638 -72158834 + L2 LINE L2 2566 2749 -565 223 314 67 48 chr11 76625274 76625447 -72158025 + MIR SINE MIR 19 196 -62 2161 104 3 10 chr11 76625682 76625989 -72157483 + AluSx SINE Alu 1 305 -7 215 207 17 17 chr11 76626446 76626504 -72156968 - MIR SINE MIR -142 120 63 574 265 20 7 chr11 76626578 76626725 -72156747 + MIR3 SINE MIR 45 193 -15 359 267 114 0 chr11 76627299 76627404 -72156068 + MIR3 SINE MIR 83 199 -9 216 213 0 0 chr11 76627531 76627592 -72155880 + CT-rich Low_complexity Low_complexity 2 62 0 243 301 10 39 chr11 76628099 76628202 -72155270 - MIR3 SINE MIR -6 202 103 259 290 134 42 chr11 76628251 76628431 -72155041 + MIR3 SINE MIR 11 206 -2 333 337 120 6 chr11 76628444 76628619 -72154853 + MIR3 SINE MIR 8 202 -6 1542 185 14 3 chr11 76629338 76629625 -72153847 + AluJo SINE Alu 1 290 -22 250 232 0 14 chr11 76629634 76629703 -72153769 + MER103 DNA DNA 97 164 -2 690 171 116 24 chr11 76629766 76629930 -72153542 + MER58A DNA MER1_type 45 223 -1 561 217 204 62 chr11 76630044 76630270 -72153202 + MIR SINE MIR 5 262 0 221 231 77 0 chr11 76630807 76630885 -72152587 - MIR3 SINE MIR -5 203 120 189 258 225 34 chr11 76631033 76631122 -72152350 + MIR3 SINE MIR 96 201 -7 369 297 65 49 chr11 76631401 76631586 -72151886 - MIR3 SINE MIR -3 205 18 1416 170 0 4 chr11 76632265 76632506 -72150966 + AluJb SINE Alu 51 290 -22 248 344 123 0 chr11 76632603 76632757 -72150715 + L3 LINE CR1 1349 1521 -56 363 327 120 7 chr11 76632801 76632951 -72150521 - MIR3 SINE MIR -26 182 16 2400 81 0 0 chr11 76633104 76633411 -72150061 - AluY SINE Alu -4 307 1 265 230 98 65 chr11 76633472 76633615 -72149857 + MIR SINE MIR 47 191 -71 2406 136 100 10 chr11 76633724 76634115 -72149357 + MSTB LTR MaLR 1 426 0 341 251 59 79 chr11 76634205 76634357 -72149115 - L3 LINE CR1 -77 1500 1351 2480 52 0 7 chr11 76634357 76634662 -72148810 - AluY SINE Alu -8 303 1 341 251 59 79 chr11 76634662 76634712 -72148760 - L3 LINE CR1 -226 1351 1302 1312 137 42 9 chr11 76634864 76635076 -72148396 + MER20 DNA MER1_type 1 219 0 185 386 16 8 chr11 76637567 76637694 -72145778 - L2 LINE L2 -2 3270 3143 448 231 0 54 chr11 76638208 76638338 -72145134 + L1ME3 LINE L1 6037 6159 -3 609 258 0 38 chr11 76638534 76638693 -72144779 + MIR SINE MIR 36 188 -74 400 351 74 42 chr11 76638764 76639414 -72144058 + L2 LINE L2 2571 3234 -38 249 260 149 52 chr11 76639606 76639760 -72143712 - MIR3 SINE MIR -1 207 39 208 333 0 0 chr11 76641088 76641142 -72142330 + MIR SINE MIR 20 73 -189 1440 163 4 23 chr11 76641143 76641400 -72142072 - AluJo SINE Alu -23 289 38 206 260 0 0 chr11 76641400 76641450 -72142022 + MIR SINE MIR 66 115 -147 221 327 53 18 chr11 76641556 76641669 -72141803 + MIR SINE MIR 96 212 -50 316 91 0 78 chr11 76642209 76642286 -72141186 + (TG)n Simple_repeat Simple_repeat 2 72 0 272 370 11 0 chr11 76642295 76642387 -72141085 - MIR SINE MIR -95 113 21 2233 89 0 3 chr11 76642539 76642842 -72140630 - AluY SINE Alu -9 302 1 622 284 12 0 chr11 76643117 76643286 -72140186 + MIR SINE MIR 89 259 -3 426 363 117 9 chr11 76643781 76644098 -72139374 + L2 LINE L2 1617 1967 -1347 314 330 62 0 chr11 76644619 76644731 -72138741 - MIR SINE MIR -69 139 21 476 307 68 34 chr11 76644786 76644962 -72138510 + MIR3 SINE MIR 17 198 -10 193 254 106 78 chr11 76645058 76645275 -72138197 + L2 LINE L2 2860 3082 -190 419 279 0 10 chr11 76645478 76645582 -72137890 - MIR SINE MIR -140 122 20 361 24 0 141 chr11 76645799 76645884 -72137588 + (TG)n Simple_repeat Simple_repeat 2 74 0 266 0 29 0 chr11 76646358 76646392 -72137080 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 2047 108 0 0 chr11 76646614 76646892 -72136580 + AluSg SINE Alu 1 278 -32 849 257 40 10 chr11 76647072 76647274 -72136198 + MER63A DNA MER1_type 1 208 -2 4379 154 44 9 chr11 76647311 76647991 -72135481 - L1MB4 LINE L1 0 6180 5464 225 0 0 0 chr11 76647991 76648016 -72135456 + (TTA)n Simple_repeat Simple_repeat 3 27 0 4379 154 44 9 chr11 76648016 76648183 -72135289 - L1MB4 LINE L1 -716 5464 5304 1739 112 116 11 chr11 76648183 76648462 -72135010 + AluSc SINE Alu 1 305 -4 1005 171 11 11 chr11 76648462 76648644 -72134828 - AluJo SINE Alu -20 292 120 2461 85 0 0 chr11 76648829 76649134 -72134338 - AluSq SINE Alu -8 305 1 383 252 136 48 chr11 76649195 76649312 -72134160 + L1M4 LINE L1 4903 5008 -1138 1586 167 68 10 chr11 76649312 76649606 -72133866 + AluJo SINE Alu 1 311 -1 383 252 136 48 chr11 76649606 76649945 -72133527 + L1M4 LINE L1 5008 5399 -747 2255 99 3 3 chr11 76650011 76650304 -72133168 - AluSc SINE Alu -16 293 1 3517 227 73 18 chr11 76650365 76651067 -72132405 - L1M4 LINE L1 -2393 3753 2963 2591 61 0 3 chr11 76651067 76651377 -72132095 - AluY SINE Alu -2 309 1 3517 227 73 18 chr11 76651377 76651807 -72131665 - L1M4 LINE L1 -3183 2963 2558 2287 113 0 0 chr11 76651990 76652291 -72131181 - AluSc SINE Alu -8 301 1 1635 265 59 23 chr11 76652311 76653045 -72130427 - L2 LINE L2 -1 3312 2551 266 282 51 0 chr11 76653069 76653147 -72130325 - L1ME LINE L1 -538 5583 5502 271 149 0 30 chr11 76653663 76653730 -72129742 + (TTCC)n Simple_repeat Simple_repeat 3 67 0 180 77 0 0 chr11 76653728 76653754 -72129718 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 * 513 200 0 0 chr11 76653814 76653889 -72129583 + AluJ/FLAM SINE Alu 2 76 -236 321 282 92 42 chr11 76653993 76654135 -72129337 - MIR SINE MIR -61 147 43 269 296 233 0 chr11 76654730 76654889 -72128583 - MIR SINE MIR -18 244 49 372 288 25 25 chr11 76655130 76655248 -72128224 - L3 LINE CR1 -8 1569 1452 2175 102 7 3 chr11 76655248 76655542 -72127930 - AluSg SINE Alu -15 295 1 935 124 0 0 chr11 76655546 76655675 -72127797 - AluSg/x SINE Alu -9 303 175 219 366 42 7 chr11 76655684 76655826 -72127646 - L3 LINE CR1 -125 1452 1306 580 131 0 24 chr11 76655830 76655914 -72127558 + AluSg/x SINE Alu 178 259 -53 392 288 86 7 chr11 76655914 76656053 -72127419 - L3 LINE CR1 -251 1326 1177 426 39 0 0 chr11 76656243 76656295 -72127177 + (CAT)n Simple_repeat Simple_repeat 3 54 0 473 364 69 26 chr11 76656470 76656995 -72126477 - L2 LINE L2 -209 3063 2507 189 0 0 0 chr11 76658025 76658046 -72125426 + (T)n Simple_repeat Simple_repeat 1 21 0 252 333 144 36 chr11 76658473 76658668 -72124804 - L2 LINE L2 -12 3260 3045 376 284 16 13 chr11 76658867 76658993 -72124479 + MIR SINE MIR 37 141 -67 243 336 143 22 chr11 76659211 76659434 -72124038 + MIR SINE MIR 6 255 -7 233 226 38 0 chr11 76659854 76659907 -72123565 + L1MC/D LINE L1 5715 5769 -2039 2310 87 3 7 chr11 76660162 76660460 -72123012 + AluSp SINE Alu 1 297 -16 24 32 0 0 chr11 76660619 76660650 -72122822 + AT_rich Low_complexity Low_complexity 1 31 0 2299 97 0 13 chr11 76660729 76661028 -72122444 - AluSg SINE Alu -15 295 1 254 241 241 8 chr11 76661039 76661172 -72122300 + MIR SINE MIR 72 235 -27 2039 145 3 0 chr11 76661332 76661629 -72121843 + AluSx SINE Alu 1 298 -14 213 288 54 36 chr11 76662118 76662229 -72121243 + MIR SINE MIR 150 262 0 224 402 31 8 chr11 76662233 76662360 -72121112 - L2 LINE L2 -6 3266 3137 346 200 0 59 chr11 76662461 76662546 -72120926 - MIR SINE MIR -81 181 102 970 299 131 25 chr11 76662619 76663147 -72120325 - MLT1K LTR MaLR -3 585 2 2292 68 0 68 chr11 76663244 76663568 -72119904 + AluY SINE Alu 1 302 -9 2264 78 0 14 chr11 76665538 76665821 -72117651 + AluSc SINE Alu 1 279 -30 188 35 35 0 chr11 76665824 76665853 -72117619 + (TAA)n Simple_repeat Simple_repeat 2 31 0 820 139 0 0 chr11 76665945 76666053 -72117419 + FLAM_A SINE Alu 21 128 -14 255 103 0 0 chr11 76666072 76666111 -72117361 + (CA)n Simple_repeat Simple_repeat 2 40 0 743 300 45 89 chr11 76666113 76666576 -72116896 + L2 LINE L2 2830 3272 0 520 169 54 43 chr11 76666644 76666785 -72116687 - MLT1G1 LTR MaLR -441 147 1 * 2081 133 73 52 chr11 76666767 76666983 -72116489 - MSTB1 LTR MaLR 0 432 203 2306 77 7 3 chr11 76666983 76667270 -72116202 - AluSg SINE Alu -22 288 1 2081 133 73 52 chr11 76667270 76667437 -72116035 - MSTB1 LTR MaLR -229 203 41 71 33 0 0 chr11 76667437 76667529 -72115943 + AT_rich Low_complexity Low_complexity 1 92 0 367 94 19 0 chr11 76667540 76667593 -72115879 - MSTB1 LTR MaLR -378 54 1 296 163 0 0 chr11 76667593 76667636 -72115836 - MLT1G1 LTR MaLR -552 43 1 285 297 50 40 chr11 76667827 76667928 -72115544 - L2 LINE L2 0 3272 3171 1309 188 83 0 chr11 76668555 76668784 -72114688 + AluJo SINE Alu 1 248 -64 21 0 0 0 chr11 76668883 76668904 -72114568 + AT_rich Low_complexity Low_complexity 1 21 0 513 248 71 7 chr11 76668916 76669057 -72114415 + L2 LINE L2 3164 3313 0 610 289 83 0 chr11 76669479 76669659 -72113813 - MIR SINE MIR -34 228 34 2305 91 0 0 chr11 76669764 76670051 -72113421 - AluSc SINE Alu -9 300 14 24 67 0 0 chr11 76670215 76670260 -72113212 + AT_rich Low_complexity Low_complexity 1 45 0 2111 134 7 0 chr11 76670350 76670657 -72112815 - AluSq SINE Alu -4 309 1 477 0 0 0 chr11 76671003 76671056 -72112416 + (TGGA)n Simple_repeat Simple_repeat 3 55 0 1720 161 7 7 chr11 76671056 76671329 -72112143 - AluJb SINE Alu -34 278 6 482 132 0 0 chr11 76671628 76671704 -72111768 - AluJ/FRAM SINE Alu -5 307 232 1368 186 116 11 chr11 76671708 76671983 -72111489 - AluSg SINE Alu -6 304 1 315 287 109 0 chr11 76671983 76672084 -72111388 - MIR SINE MIR -112 150 39 309 252 37 68 chr11 76672104 76672288 -72111184 - MLT1J2 LTR MaLR -12 410 266 2231 69 3 24 chr11 76672373 76672662 -72110810 + AluY SINE Alu 5 287 -24 780 131 0 15 chr11 76672693 76672812 -72110660 - L1MB2 LINE L1 -25 6146 6028 584 104 13 0 chr11 76672812 76672889 -72110583 - MADE1 DNA Mariner -2 78 1 833 123 39 15 chr11 76673201 76673331 -72110141 - FLAM_C SINE Alu 0 133 1 212 242 42 105 chr11 76673540 76673635 -72109837 + MIR SINE MIR 67 155 -107 338 233 144 0 chr11 76673664 76673754 -72109718 - MIR SINE MIR -122 140 38 301 241 7 68 chr11 76674068 76674156 -72109316 + MIR SINE MIR 60 146 -68 221 185 74 37 chr11 76674421 76674475 -72108997 - L2 LINE L2 0 3313 3258 * 316 302 151 19 chr11 76674468 76674726 -72108746 + L2 LINE L2 2513 2804 -510 192 258 16 113 chr11 76674903 76674965 -72108507 + L2 LINE L2 3030 3085 -187 1920 151 0 29 chr11 76675033 76675344 -72108128 + AluJo SINE Alu 2 303 -9 340 333 94 0 chr11 76675616 76675754 -72107718 + MIR SINE MIR 24 174 -88 2164 108 0 0 chr11 76675809 76676111 -72107361 - AluSc SINE Alu 0 302 1 478 246 60 15 chr11 76676111 76676245 -72107227 - MIR SINE MIR -29 233 94 478 245 114 93 chr11 76676342 76676718 -72106754 + MLT1J LTR MaLR 99 482 -29 1792 135 40 20 chr11 76676739 76677035 -72106437 - AluJo SINE Alu -10 302 1 644 235 118 20 chr11 76678108 76678261 -72105211 - MER5A DNA MER1_type -21 168 1 279 260 14 27 chr11 76679177 76679250 -72104222 - L2 LINE L2 0 3313 3242 1800 129 92 6 chr11 76679310 76679619 -72103853 + MER7A DNA MER2_type 1 346 0 271 324 78 14 chr11 76679626 76679768 -72103704 + MIR SINE MIR 1 151 -111 25 31 0 0 chr11 76680571 76680603 -72102869 + AT_rich Low_complexity Low_complexity 1 32 0 383 282 88 33 chr11 76681350 76681531 -72101941 - MIR SINE MIR -65 197 7 293 344 61 25 chr11 76682056 76682219 -72101253 - MIR3 SINE MIR -15 193 25 1919 183 93 143 chr11 76682268 76683185 -72100287 + LTR28 LTR ERV1 1 1015 -5 186 225 67 90 chr11 76683455 76683544 -72099928 - L3b LINE CR1 0 1583 1497 368 278 87 0 chr11 76683793 76683908 -72099564 + MIR SINE MIR 84 208 -54 758 239 203 17 chr11 76684448 76684749 -72098723 + L1M4c LINE L1 55 411 -5973 1260 112 61 51 chr11 76684788 76684873 -72098599 + L1MB4 LINE L1 5880 5963 -217 1308 217 35 54 chr11 76684873 76685187 -72098285 + AluJo SINE Alu 1 308 -4 1260 112 61 51 chr11 76685187 76685355 -72098117 + L1MB4 LINE L1 5963 6135 -45 862 184 89 6 chr11 76685355 76685523 -72097949 + FRAM SINE Alu 1 175 -1 263 173 0 0 chr11 76685540 76685592 -72097880 + L1MB4 LINE L1 6126 6177 -3 396 271 93 14 chr11 76685624 76685764 -72097708 + MIR SINE MIR 67 217 -45 24 77 0 0 chr11 76685810 76685862 -72097610 + AT_rich Low_complexity Low_complexity 1 52 0 244 271 129 0 chr11 76685883 76685953 -72097519 - L2 LINE L2 -72 3200 3122 236 125 0 0 chr11 76686109 76686149 -72097323 + tRNA-Ala-GCG tRNA tRNA 1 40 -35 278 126 21 168 chr11 76686328 76686373 -72097099 + MIR SINE MIR 112 137 -125 2217 85 0 23 chr11 76686373 76686680 -72096792 - AluSg SINE Alu -10 300 1 278 126 21 168 chr11 76686680 76686729 -72096743 + MIR SINE MIR 137 192 -70 1303 157 0 14 chr11 76686846 76687056 -72096416 - AluJb SINE Alu -4 308 102 1663 83 9 13 chr11 76687056 76687286 -72096186 + AluY SINE Alu 83 311 0 2487 60 13 3 chr11 76687648 76687950 -72095522 - AluY SINE Alu -6 305 1 370 213 12 12 chr11 76688179 76688259 -72095213 - L2 LINE L2 -14 3258 3179 2403 102 0 3 chr11 76688270 76688575 -72094897 - AluSx SINE Alu -8 304 1 244 224 15 30 chr11 76688723 76688790 -72094682 + MIR3 SINE MIR 14 79 -129 1818 163 0 10 chr11 76688894 76689189 -72094283 - AluJo SINE Alu -20 292 1 227 284 78 39 chr11 76689191 76689293 -72094179 + MIR3 SINE MIR 82 187 -21 368 335 72 46 chr11 76689341 76689645 -72093827 - L2 LINE L2 -459 2855 2544 3524 170 43 21 chr11 76689684 76690365 -72093107 + L1MB3 LINE L1 5446 6141 -42 1720 150 52 0 chr11 76690365 76690651 -72092821 + AluSx SINE Alu 1 301 -11 431 62 46 0 chr11 76690651 76690716 -72092756 + GA-rich Low_complexity Low_complexity 1 68 0 1921 150 7 0 chr11 76690744 76691038 -72092434 - AluSx SINE Alu -16 296 1 424 286 165 62 chr11 76691108 76691604 -72091868 - L2 LINE L2 -836 2478 1932 337 288 22 92 chr11 76692586 76692770 -72090702 - MIR SINE MIR -72 190 20 504 304 85 18 chr11 76692800 76693024 -72090448 - MIR SINE MIR -1 261 23 928 173 73 8 chr11 76693240 76693549 -72089923 - MLT1A2 LTR MaLR 0 374 1 219 69 0 0 chr11 76693737 76693766 -72089706 + (GA)n Simple_repeat Simple_repeat 2 30 0 1222 295 68 36 chr11 76694397 76695003 -72088469 + L1MEd LINE L1 5 629 -5490 213 259 19 0 chr11 76695010 76695064 -72088408 - MIR SINE MIR -65 197 143 385 267 68 28 chr11 76695064 76695212 -72088260 - MIR SINE MIR -78 184 28 189 196 43 0 chr11 76695202 76695248 -72088224 - L2 LINE L2 -1 3271 3224 * 282 258 0 0 chr11 76696434 76696500 -72086972 - MIR SINE MIR -111 151 86 445 273 66 0 chr11 76696550 76696671 -72086801 + MIR3 SINE MIR 63 191 -17 191 240 10 120 chr11 76697491 76697591 -72085881 + L3 LINE CR1 1319 1407 -170 2301 91 3 3 chr11 76697678 76697985 -72085487 - AluSg SINE Alu -3 307 1 2209 168 18 25 chr11 76698175 76698574 -72084898 + MSTD LTR MaLR 1 396 0 362 279 39 31 chr11 76698988 76699117 -72084355 + MIR SINE MIR 20 149 -113 707 210 25 12 chr11 76699160 76699322 -72084150 - L1ME1 LINE L1 -5 6161 5998 222 303 66 13 chr11 76699396 76699472 -72084000 - MER5A DNA MER1_type -98 91 12 1388 153 176 30 chr11 76699644 76699939 -72083533 + MER1B DNA MER1_type 1 338 -1 2045 282 77 9 chr11 76699968 76700693 -72082779 - L2 LINE L2 -217 3096 2324 626 304 62 21 chr11 76700842 76701082 -72082390 - MIR SINE MIR -6 256 7 1159 245 7 22 chr11 76701280 76701553 -72081919 + L2 LINE L2 2804 3072 -241 2320 100 13 0 chr11 76701589 76701888 -72081584 - AluSx SINE Alu -9 303 1 1067 129 71 0 chr11 76701907 76702077 -72081395 - MSTD LTR MaLR 0 396 215 900 177 0 0 chr11 76702108 76702249 -72081223 - FAM SINE Alu -13 172 32 668 205 0 8 chr11 76702287 76702414 -72081058 - MSTD LTR MaLR -297 131 6 537 248 189 0 chr11 76702417 76702570 -72080902 + L2 LINE L2 3127 3308 -5 309 278 157 30 chr11 76703352 76703662 -72079810 + L1M4b LINE L1 11 659 -6196 25 31 0 0 chr11 76704094 76704126 -72079346 + AT_rich Low_complexity Low_complexity 1 32 0 2097 251 81 56 chr11 76704129 76704761 -72078711 + L1M4b LINE L1 1195 1810 -5328 2093 155 30 47 chr11 76704761 76705168 -72078304 + L1PA15 LINE L1 5766 6165 0 2097 251 81 56 chr11 76705168 76705700 -72077772 + L1M4b LINE L1 1810 2553 -4585 450 0 0 0 chr11 76705700 76705750 -72077722 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 2097 251 81 56 chr11 76705750 76706031 -72077441 + L1M4b LINE L1 2553 2825 -4313 1579 203 75 12 chr11 76706012 76706412 -72077060 + L1MB8 LINE L1 5753 6177 -1 * 273 276 104 75 chr11 76706466 76706600 -72076872 - L2 LINE L2 -2 3270 3133 988 239 76 69 chr11 76706732 76707138 -72076334 + MLT1J LTR MaLR 100 508 -3 329 284 75 15 chr11 76707472 76707606 -72075866 + L2 LINE L2 3162 3303 -10 180 111 0 0 chr11 76707609 76707636 -72075836 + (TGGA)n Simple_repeat Simple_repeat 3 29 0 234 0 0 0 chr11 76708473 76708499 -72074973 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 333 257 56 21 chr11 76708515 76708622 -72074850 - MIR SINE MIR -95 113 1 293 330 121 55 chr11 76708674 76708858 -72074614 + L2 LINE L2 2852 3022 -250 809 188 0 15 chr11 76708858 76708991 -72074481 - FLAM_A SINE Alu -2 131 1 293 330 121 55 chr11 76708991 76709170 -72074302 + L2 LINE L2 3022 3239 -33 1440 162 35 125 chr11 76709541 76709942 -72073530 + MLT1A1 LTR MaLR 1 365 0 189 0 0 0 chr11 76709955 76709976 -72073496 + (T)n Simple_repeat Simple_repeat 1 21 0 275 283 0 61 chr11 76709976 76710109 -72073363 - MIR SINE MIR -67 141 15 392 261 184 32 chr11 76710481 76710500 -72072972 + MIR SINE MIR 11 26 -236 2212 94 0 3 chr11 76710500 76710788 -72072684 - AluSx SINE Alu 0 312 26 392 261 184 32 chr11 76710788 76710986 -72072486 + MIR SINE MIR 26 261 -1 206 343 15 0 chr11 76711868 76711935 -72071537 - L2 LINE L2 -5 3267 3200 185 258 197 0 chr11 76711987 76712053 -72071419 - MIR SINE MIR -64 198 120 285 81 0 129 chr11 76712233 76712295 -72071177 - MLT2A2 LTR ERVL 0 453 391 269 220 0 0 chr11 76712267 76712326 -72071146 - LTR66 LTR ERVL -153 457 399 * 632 123 0 43 chr11 76712348 76712535 -72070937 + (TA)n Simple_repeat Simple_repeat 1 179 0 2785 109 43 0 chr11 76712541 76712936 -72070536 - MLT2A2 LTR ERVL -40 413 2 198 292 135 0 chr11 76713055 76713144 -72070328 - L2 LINE L2 -4 3268 3168 1894 131 27 24 chr11 76713994 76714329 -72069143 - L1MB3 LINE L1 -12 6171 5836 6132 245 133 71 chr11 76714926 76715934 -72067538 + L2 LINE L2 166 1110 -2203 2155 137 0 0 chr11 76715934 76716233 -72067239 - AluSx SINE Alu -13 299 1 6132 245 133 71 chr11 76716233 76716687 -72066785 + L2 LINE L2 1110 1535 -1778 2032 122 27 7 chr11 76716687 76716983 -72066489 - AluSg SINE Alu -8 302 1 6132 245 133 71 chr11 76716983 76717313 -72066159 + L2 LINE L2 1535 1843 -1470 1521 178 30 34 chr11 76717313 76717611 -72065861 - AluJb SINE Alu -14 298 2 6132 245 133 71 chr11 76717611 76718741 -72064731 + L2 LINE L2 1843 3276 -37 244 243 207 18 chr11 76719185 76719296 -72064176 + L2 LINE L2 3141 3272 0 218 346 0 37 chr11 76719310 76719417 -72064055 - MIR SINE MIR -113 149 47 183 229 100 43 chr11 76719857 76719927 -72063545 - MIR SINE MIR -97 165 92 1663 131 47 18 chr11 76720167 76720462 -72063010 + AluJb SINE Alu 1 303 0 2128 137 30 30 chr11 76720619 76720991 -72062481 + L1PA16 LINE L1 5794 6165 -1 1838 148 3 16 chr11 76721216 76721519 -72061953 - AluJb SINE Alu -13 299 1 227 314 62 106 chr11 76721659 76721885 -72061587 + L2 LINE L2 3019 3234 -38 211 221 29 29 chr11 76721890 76721958 -72061514 + (TATATG)n Simple_repeat Simple_repeat 4 71 0 526 308 88 0 chr11 76721968 76722127 -72061345 - MIR3 SINE MIR -5 203 31 2000 109 10 20 chr11 76722537 76722831 -72060641 + AluSx SINE Alu 17 307 -5 1567 55 0 0 chr11 76722954 76723160 -72060312 + AluY SINE Alu 105 310 0 416 20 0 20 chr11 76723302 76723353 -72060119 + L1P3 LINE L1 1092 1141 -4734 4205 178 27 56 chr11 76723386 76724148 -72059324 + L1MB3 LINE L1 5302 6037 -146 584 104 13 0 chr11 76724148 76724225 -72059247 + MADE1 DNA Mariner 1 78 -2 4205 178 27 56 chr11 76724225 76724344 -72059128 + L1MB3 LINE L1 6037 6158 -25 2533 42 0 0 chr11 76724375 76724662 -72058810 - AluY SINE Alu -24 287 1 480 35 0 0 chr11 76724676 76724734 -72058738 + (CA)n Simple_repeat Simple_repeat 1 58 0 481 127 13 25 chr11 76724910 76724989 -72058483 - MADE1 DNA Mariner -2 78 1 3021 207 20 66 chr11 76724995 76725752 -72057720 - L1MB5 LINE L1 -151 6023 5302 416 20 0 20 chr11 76725785 76725836 -72057636 - L1P3 LINE L1 -4734 1141 1092 2401 56 3 0 chr11 76725978 76726287 -72057185 - AluY SINE Alu 0 310 1 480 35 0 0 chr11 76726301 76726359 -72057113 + (CA)n Simple_repeat Simple_repeat 1 58 0 2123 67 57 25 chr11 76726612 76726894 -72056578 + AluSc SINE Alu 1 291 -18 651 171 0 27 chr11 76726900 76727011 -72056461 + MER3 DNA MER1_type 6 113 -96 2158 72 0 0 chr11 76727079 76727342 -72056130 + L1PA6 LINE L1 5892 6154 0 600 230 56 0 chr11 76727390 76727516 -72055956 - L2 LINE L2 0 3313 3181 27423 124 6 19 chr11 76727545 76729684 -72053788 + L1PA8A LINE L1 8 2172 -4274 2266 113 0 3 chr11 76729684 76729985 -72053487 - AluSg SINE Alu -10 300 1 27423 124 6 19 chr11 76729985 76731247 -72052225 + L1PA8A LINE L1 2172 3448 -2998 2412 84 0 0 chr11 76731247 76731546 -72051926 + AluY SINE Alu 1 299 -12 27423 124 6 19 chr11 76731546 76734563 -72048909 + L1PA8A LINE L1 3448 6434 -12 924 237 19 9 chr11 76734681 76734892 -72048580 + MIR SINE MIR 20 232 -30 370 288 41 24 chr11 76734982 76735152 -72048320 - L2 LINE L2 -177 3136 2964 303 286 125 9 chr11 76735180 76735292 -72048180 - MIR SINE MIR -116 146 22 396 262 121 20 chr11 76735973 76736122 -72047350 + MIR3 SINE MIR 41 204 -4 1146 156 50 14 chr11 76736844 76737062 -72046410 + L1PA13 LINE L1 5935 6160 -3 970 240 47 21 chr11 76737146 76737379 -72046093 - MER8 DNA MER2_type 0 239 1 709 230 80 25 chr11 76737411 76737611 -72045861 + MIR SINE MIR 38 248 -14 22 0 0 0 chr11 76737633 76737655 -72045817 + AT_rich Low_complexity Low_complexity 1 22 0 234 128 0 0 chr11 76737964 76738003 -72045469 + (CGTG)n Simple_repeat Simple_repeat 1 39 0 1618 97 0 0 chr11 76738357 76738563 -72044909 + THE1B LTR MaLR 159 364 0 379 274 9 26 chr11 76738563 76738676 -72044796 - MIR3 SINE MIR -50 158 48 199 262 33 0 chr11 76739270 76739331 -72044141 + L2 LINE L2 2991 3053 -219 239 301 36 12 chr11 76739814 76739897 -72043575 + MIR SINE MIR 17 101 -107 266 107 429 0 chr11 76739898 76739954 -72043518 - MADE1 DNA Mariner 0 80 1 273 203 177 13 chr11 76739958 76740037 -72043435 + MIR3 SINE MIR 105 196 -12 2370 76 7 3 chr11 76740659 76740963 -72042509 - AluY SINE Alu -6 305 1 530 286 48 32 chr11 76741087 76741276 -72042196 + MIR SINE MIR 19 210 -52 191 358 125 17 chr11 76741405 76741525 -72041947 + L2 LINE L2 3137 3269 -3 181 283 75 19 chr11 76741524 76741577 -72041895 - L2 LINE L2 -28 3285 3230 * 644 199 98 120 chr11 76741608 76741770 -72041702 - MIR SINE MIR -1 261 106 1446 160 0 34 chr11 76741770 76742032 -72041440 + L1MB7 LINE L1 5932 6184 0 644 199 98 120 chr11 76742032 76742135 -72041337 - MIR SINE MIR -156 106 2 409 251 108 98 chr11 76742533 76742623 -72040849 + MLT1J2 LTR MaLR 81 169 -240 2410 57 6 35 chr11 76742623 76742939 -72040533 - AluY SINE Alu 0 311 5 409 251 108 98 chr11 76742939 76743208 -72040264 + MLT1J2 LTR MaLR 169 397 -12 341 294 98 0 chr11 76743228 76743330 -72040142 + MIR SINE MIR 39 150 -112 1368 186 116 11 chr11 76743330 76743605 -72039867 + AluSg SINE Alu 1 304 -6 482 132 0 0 chr11 76743609 76743685 -72039787 + AluJ/FRAM SINE Alu 232 307 -5 1720 161 7 7 chr11 76743984 76744257 -72039215 + AluJb SINE Alu 6 278 -34 477 0 0 0 chr11 76744257 76744310 -72039162 + (TCCA)n Simple_repeat Simple_repeat 3 55 0 1959 134 16 3 chr11 76744656 76744961 -72038511 + AluSq SINE Alu 1 309 -4 24 67 0 0 chr11 76745051 76745096 -72038376 + AT_rich Low_complexity Low_complexity 1 45 0 2305 91 0 0 chr11 76745260 76745547 -72037925 + AluSc SINE Alu 14 300 -9 610 289 83 0 chr11 76745652 76745832 -72037640 + MIR SINE MIR 34 228 -34 513 248 71 7 chr11 76746255 76746396 -72037076 - L2 LINE L2 0 3313 3164 21 0 0 0 chr11 76746408 76746429 -72037043 + AT_rich Low_complexity Low_complexity 1 21 0 1309 188 83 0 chr11 76746528 76746757 -72036715 - AluJo SINE Alu -64 248 1 285 297 50 40 chr11 76747384 76747485 -72035987 + L2 LINE L2 3171 3272 0 296 163 0 0 chr11 76747676 76747719 -72035753 + MLT1G1 LTR MaLR 1 43 -552 367 94 19 0 chr11 76747719 76747772 -72035700 + MSTB1 LTR MaLR 1 54 -378 71 33 0 0 chr11 76747783 76747875 -72035597 + AT_rich Low_complexity Low_complexity 1 92 0 2081 133 73 52 chr11 76747875 76748042 -72035430 + MSTB1 LTR MaLR 41 203 -229 2306 77 7 3 chr11 76748042 76748329 -72035143 + AluSg SINE Alu 1 288 -22 2081 133 73 52 chr11 76748329 76748545 -72034927 + MSTB1 LTR MaLR 203 432 0 520 169 54 43 chr11 76748527 76748668 -72034804 + MLT1G1 LTR MaLR 1 89 -441 * 743 300 45 89 chr11 76748736 76749199 -72034273 - L2 LINE L2 0 3272 2830 255 103 0 0 chr11 76749201 76749240 -72034232 + (TG)n Simple_repeat Simple_repeat 2 40 0 820 139 0 0 chr11 76749259 76749367 -72034105 - FLAM_A SINE Alu -14 128 21 188 35 35 0 chr11 76749459 76749488 -72033984 + (TTA)n Simple_repeat Simple_repeat 2 31 0 2264 78 0 14 chr11 76749491 76749774 -72033698 - AluSc SINE Alu -30 279 1 2300 82 0 53 chr11 76751745 76752064 -72031408 - AluY SINE Alu -9 302 1 2139 116 0 0 chr11 76752159 76752444 -72031028 + AluSx SINE Alu 1 285 -27 189 0 0 0 chr11 76752447 76752468 -72031004 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 183 296 70 70 chr11 76752566 76752681 -72030791 + MIR3 SINE MIR 15 129 -79 744 179 15 8 chr11 76752748 76752882 -72030590 - FLAM_A SINE Alu 0 142 8 307 212 66 58 chr11 76752887 76753024 -72030448 - HAL1 LINE L1 0 2507 2370 946 139 7 20 chr11 76753026 76753177 -72030295 - AluJo SINE Alu -163 149 1 1268 211 116 41 chr11 76753177 76753293 -72030179 - HAL1 LINE L1 -764 1743 1637 826 211 19 25 chr11 76753293 76753454 -72030018 - FRAM SINE Alu -6 160 1 1268 211 116 41 chr11 76753454 76753777 -72029695 - HAL1 LINE L1 -870 1637 1271 40 37 0 0 chr11 76753867 76753921 -72029551 + AT_rich Low_complexity Low_complexity 1 54 0 422 271 113 98 chr11 76753921 76754045 -72029427 - HAL1 LINE L1 -1293 1214 1093 1919 144 0 7 chr11 76754045 76754330 -72029142 - AluSx SINE Alu -29 283 1 422 271 113 98 chr11 76754330 76755252 -72028220 - HAL1 LINE L1 -1414 1093 107 400 270 117 0 chr11 76755568 76755790 -72027682 + L1ME LINE L1 5265 5512 -650 401 249 17 62 chr11 76755849 76756012 -72027460 + MIR SINE MIR 45 141 -67 532 67 0 0 chr11 76756250 76756325 -72027147 + AluSc SINE Alu 231 305 -4 221 248 59 98 chr11 76756861 76757014 -72026458 - MIR SINE MIR -12 250 104 384 248 158 23 chr11 76757047 76757180 -72026292 - MIR SINE MIR -105 157 7 3637 116 65 8 chr11 76757621 76758145 -72025327 + MER41C LTR ERV1 1 554 0 487 231 29 0 chr11 76758715 76758819 -72024653 + MIR SINE MIR 37 143 -119 241 301 54 72 chr11 76759201 76759220 -72024252 - L2 LINE L2 0 3272 3254 2021 131 34 0 chr11 76759220 76759518 -72023954 - AluSx SINE Alu -4 308 1 241 301 54 72 chr11 76759518 76759664 -72023808 - L2 LINE L2 -18 3254 3110 524 265 53 20 chr11 76759666 76759817 -72023655 + LTR50 LTR ERVL 12 167 -628 638 233 208 4 chr11 76759980 76760220 -72023252 + LTR50 LTR ERVL 503 791 -4 416 225 125 17 chr11 76760242 76760362 -72023110 - MIR3 SINE MIR -44 164 32 352 323 82 45 chr11 76760365 76760585 -72022887 - L2 LINE L2 -11 3261 3034 363 368 29 12 chr11 76761063 76761234 -72022238 + L2 LINE L2 2857 3030 -242 1970 148 0 26 chr11 76761234 76761544 -72021928 - AluJb SINE Alu -10 302 1 359 287 60 30 chr11 76762235 76762402 -72021070 + MIR SINE MIR 21 192 -70 461 255 52 68 chr11 76762471 76762687 -72020785 + MIR SINE MIR 11 212 -50 189 200 107 67 chr11 76763378 76763453 -72020019 - MIR SINE MIR -165 97 20 2114 233 88 61 chr11 76763592 76763825 -72019647 + HAL1 LINE L1 87 312 -2195 2343 104 0 0 chr11 76763825 76764133 -72019339 - AluSx SINE Alu -3 309 2 2114 233 88 61 chr11 76764133 76764591 -72018881 + HAL1 LINE L1 312 797 -1710 1442 167 8 34 chr11 76764714 76764837 -72018635 - AluJb SINE Alu -55 257 132 2370 84 0 13 chr11 76764837 76765148 -72018324 - AluY SINE Alu 0 311 5 1442 167 8 34 chr11 76765148 76765288 -72018184 - AluJb SINE Alu -180 132 1 1505 173 92 7 chr11 76765301 76765573 -72017899 - AluJb SINE Alu -17 295 1 493 233 19 0 chr11 76765574 76765677 -72017795 + HAL1 LINE L1 785 889 -1618 2259 94 3 0 chr11 76765833 76766121 -72017351 + AluSp SINE Alu 1 289 -24 1592 129 0 0 chr11 76766706 76766931 -72016541 + AluSx SINE Alu 1 225 -87 394 244 34 17 chr11 76767418 76767537 -72015935 - MIR SINE MIR -55 207 87 2215 112 7 0 chr11 76768686 76768991 -72014481 - AluY SINE Alu -2 309 3 327 341 89 0 chr11 76769725 76769848 -72013624 - MIR SINE MIR -47 215 82 1276 257 116 15 chr11 76769937 76770341 -72013131 + L2 LINE L2 2867 3311 -2 1871 157 0 0 chr11 76770351 76770653 -72012819 + AluSx SINE Alu 3 304 0 345 292 83 30 chr11 76770711 76770796 -72012676 + MIR SINE MIR 20 99 -163 2389 80 7 0 chr11 76770796 76771096 -72012376 - AluY SINE Alu -9 302 1 345 292 83 30 chr11 76771096 76771178 -72012294 + MIR SINE MIR 99 196 -66 2409 252 124 18 chr11 76771402 76772175 -72011297 + L2 LINE L2 2012 2866 -448 679 308 17 21 chr11 76772311 76772548 -72010924 + L2 LINE L2 2888 3123 -190 1794 130 19 26 chr11 76772663 76772971 -72010501 - AluSq SINE Alu -7 306 1 1907 138 0 17 chr11 76773268 76773559 -72009913 + AluJo SINE Alu 12 297 -15 2393 166 43 19 chr11 76773570 76774057 -72009415 + L1MB8 LINE L1 5369 5867 -311 201 181 32 0 chr11 76774066 76774160 -72009312 + (TA)n Simple_repeat Simple_repeat 2 98 0 502 81 58 23 chr11 76774172 76774344 -72009128 + (TA)n Simple_repeat Simple_repeat 1 178 0 1980 140 11 0 chr11 76774344 76774630 -72008842 - AluSx SINE Alu -23 289 1 1437 176 105 10 chr11 76774630 76774925 -72008547 + L1MB8 LINE L1 5853 6175 -3 639 244 36 24 chr11 76774988 76775156 -72008316 - FRAM SINE Alu -9 167 1 206 355 57 43 chr11 76775164 76775305 -72008167 - MIR SINE MIR -66 196 54 2070 117 7 10 chr11 76775755 76776055 -72007417 + AluSq SINE Alu 1 299 -14 345 169 56 54 chr11 76776073 76776202 -72007270 + L1MD2 LINE L1 6029 6162 -4 498 91 45 2 chr11 76776217 76776311 -72007161 + L1MB2 LINE L1 5268 5371 -798 557 161 25 0 chr11 76776311 76776392 -72007080 + AluJ/FLAM SINE Alu 2 84 -228 240 184 0 0 chr11 76776392 76776441 -72007031 + A-rich Low_complexity Low_complexity 1 49 0 * 248 158 18 0 chr11 76776440 76776497 -72006975 + GA-rich Low_complexity Low_complexity 3 60 0 885 155 114 68 chr11 76776530 76776749 -72006723 + L1MB2 LINE L1 5353 5581 -590 3452 166 15 20 chr11 76776783 76776821 -72006651 + L1MB2 LINE L1 5571 5608 -577 1056 192 0 6 chr11 76776821 76776993 -72006479 + FAM SINE Alu 1 171 -4 3452 166 15 20 chr11 76776993 76777572 -72005900 + L1MB2 LINE L1 5608 6185 0 379 279 214 7 chr11 76777624 76777778 -72005694 - MIR SINE MIR 0 262 77 1705 175 16 7 chr11 76777932 76778241 -72005231 - AluJo SINE Alu 0 312 1 2342 104 0 0 chr11 76778250 76778547 -72004925 - AluSx SINE Alu -15 297 1 1159 159 34 29 chr11 76778637 76778844 -72004628 - MER3 DNA MER1_type 0 209 2 1976 152 0 3 chr11 76779677 76779973 -72003499 + AluJb SINE Alu 1 295 -17 25 0 0 0 chr11 76779980 76780005 -72003467 + AT_rich Low_complexity Low_complexity 1 25 0 338 362 65 36 chr11 76780009 76780132 -72003340 - L2 LINE L2 -337 2977 2859 2264 93 3 13 chr11 76780132 76780432 -72003040 + AluY SINE Alu 1 297 -14 338 362 65 36 chr11 76780432 76780664 -72002808 - L2 LINE L2 -455 2859 2612 540 290 88 18 chr11 76781446 76781663 -72001809 + MIR SINE MIR 19 250 -12 372 245 57 0 chr11 76781713 76781819 -72001653 + MIR SINE MIR 147 258 -4 251 298 43 43 chr11 76781877 76781971 -72001501 + L2 LINE L2 3220 3313 0 2064 129 0 0 chr11 76781980 76782260 -72001212 + AluSx SINE Alu 1 280 -32 225 0 0 0 chr11 76782260 76782285 -72001187 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 275 219 153 41 chr11 76782364 76782511 -72000961 - MIR SINE MIR -61 147 33 1529 140 31 84 chr11 76783005 76783327 -72000145 + AluJb SINE Alu 1 305 -7 1863 119 17 17 chr11 76783395 76783689 -71999783 + AluJo SINE Alu 1 294 -18 22 35 0 0 chr11 76783747 76783776 -71999696 + AT_rich Low_complexity Low_complexity 1 29 0 281 340 92 26 chr11 76784372 76784525 -71998947 - L2 LINE L2 -295 2977 2815 1908 130 0 11 chr11 76784753 76785030 -71998442 + AluSx SINE Alu 29 302 -10 355 294 101 0 chr11 76785145 76785264 -71998208 + L2 LINE L2 3182 3312 -1 1613 174 17 37 chr11 76785366 76785665 -71997807 + AluJo SINE Alu 1 293 -19 40 0 0 0 chr11 76785702 76785742 -71997730 + AT_rich Low_complexity Low_complexity 1 40 0 1369 198 14 17 chr11 76785742 76786035 -71997437 + L1MB3 LINE L1 5892 6183 0 1876 154 0 32 chr11 76786041 76786353 -71997119 + AluSg SINE Alu 1 302 -8 1846 139 23 0 chr11 76786363 76786665 -71996807 + L1MB3 LINE L1 5712 6020 -163 973 144 0 44 chr11 76786672 76786832 -71996640 - AluJo SINE Alu -159 153 1 3267 191 63 33 chr11 76786855 76787501 -71995971 + L1MB5 LINE L1 4513 5138 -1036 1566 174 68 27 chr11 76787501 76787795 -71995677 + AluJo SINE Alu 1 306 -6 3267 191 63 33 chr11 76787795 76788426 -71995046 + L1MB5 LINE L1 5138 5831 -343 2002 91 8 0 chr11 76788426 76788689 -71994783 + AluSq SINE Alu 1 265 -48 457 121 30 0 chr11 76788692 76788758 -71994714 + AluSp/q SINE Alu 222 289 -24 2113 163 20 11 chr11 76788758 76789108 -71994364 + L1MB5 LINE L1 5814 6166 -8 1682 174 23 20 chr11 76789359 76789663 -71993809 - AluJb SINE Alu -7 305 1 981 163 12 0 chr11 76789921 76790081 -71993391 + L1MC/D LINE L1 5447 5608 -751 1994 141 7 3 chr11 76790081 76790387 -71993085 + AluSx SINE Alu 1 307 -5 2273 76 3 30 chr11 76790387 76790690 -71992782 + AluSp SINE Alu 1 295 -18 24 32 0 0 chr11 76791131 76791162 -71992310 + AT_rich Low_complexity Low_complexity 1 31 0 2315 107 0 0 chr11 76791242 76791541 -71991931 - AluSg SINE Alu -11 299 1 254 241 241 8 chr11 76791552 76791685 -71991787 + MIR SINE MIR 72 235 -27 2039 145 3 0 chr11 76791845 76792142 -71991330 + AluSx SINE Alu 1 298 -14 213 288 54 36 chr11 76792631 76792742 -71990730 + MIR SINE MIR 150 262 0 224 402 31 8 chr11 76792746 76792873 -71990599 - L2 LINE L2 -6 3266 3137 346 200 0 59 chr11 76792974 76793059 -71990413 - MIR SINE MIR -81 181 102 970 299 131 25 chr11 76793132 76793660 -71989812 - MLT1K LTR MaLR -3 585 2 2415 80 0 16 chr11 76793757 76794071 -71989401 + AluY SINE Alu 1 309 -2 245 311 67 8 chr11 76794269 76794388 -71989084 + MIR SINE MIR 61 186 -76 363 311 55 30 chr11 76794532 76794696 -71988776 + L1M4 LINE L1 4151 4318 -1828 2347 96 0 34 chr11 76794706 76794843 -71988629 + AluSq SINE Alu 1 141 -172 2083 135 0 3 chr11 76794843 76795140 -71988332 + AluY SINE Alu 1 296 -15 2347 96 0 34 chr11 76795140 76795326 -71988146 + AluSq SINE Alu 141 313 0 219 36 0 0 chr11 76795330 76795358 -71988114 + (T)n Simple_repeat Simple_repeat 1 28 0 1068 181 5 3 chr11 76795576 76797082 -71986390 - ALR/Alpha Satellite centromeric 0 1508 1 1130 178 1 1 chr11 76797200 76797841 -71985631 - ALR/Alpha Satellite centromeric 0 641 1 527 141 18 82 chr11 76798035 76798205 -71985267 - ALR/Alpha Satellite centromeric -13 159 1 * 1092 172 8 6 chr11 76798083 76799166 -71984306 - ALR/Alpha Satellite centromeric 0 1085 1 213 288 54 36 chr11 76799593 76799704 -71983768 + MIR SINE MIR 150 262 0 224 402 31 8 chr11 76799708 76799835 -71983637 - L2 LINE L2 -6 3266 3137 346 200 0 59 chr11 76799936 76800021 -71983451 - MIR SINE MIR -81 181 102 970 299 131 25 chr11 76800094 76800622 -71982850 - MLT1K LTR MaLR -3 585 2 2375 81 0 16 chr11 76800719 76801028 -71982444 + AluY SINE Alu 1 304 -7 631 229 128 16 chr11 76801718 76801906 -71981566 + MIR SINE MIR 50 258 -4 21 0 0 0 chr11 76802544 76802565 -71980907 + AT_rich Low_complexity Low_complexity 1 21 0 368 351 104 8 chr11 76803366 76803625 -71979847 - L2 LINE L2 -686 2628 2345 451 212 59 71 chr11 76804105 76804275 -71979197 + MLT1J LTR MaLR 338 505 -6 1887 141 55 0 chr11 76804878 76805169 -71978303 + AluSg SINE Alu 1 307 -3 2242 99 0 7 chr11 76805805 76806128 -71977344 + AluSg SINE Alu 1 321 0 222 316 83 37 chr11 76806175 76806343 -71977129 + MIR SINE MIR 20 192 -65 556 266 21 7 chr11 76806397 76806540 -71976932 + MIR SINE MIR 8 152 -110 1743 184 26 19 chr11 76806723 76807033 -71976439 + AluJb SINE Alu 1 312 0 6971 114 12 25 chr11 76807476 76809499 -71973973 + SVA Other Other 1 1398 0 1533 155 14 64 chr11 76810255 76810552 -71972920 + AluJo SINE Alu 5 286 -26 945 149 13 0 chr11 76810573 76810727 -71972745 + AluJb SINE Alu 137 292 -20 251 296 91 55 chr11 76810780 76811000 -71972472 - MIR SINE MIR -26 236 9 1789 139 31 31 chr11 76811166 76811454 -71972018 - AluSq SINE Alu -21 292 5 240 195 88 157 chr11 76811596 76811755 -71971717 - MIR SINE MIR -75 187 40 274 291 82 51 chr11 76812068 76812183 -71971289 + MIR SINE MIR 66 189 -73 2216 109 10 0 chr11 76812183 76812476 -71970996 + AluSq SINE Alu 1 296 -17 274 291 82 51 chr11 76812476 76812518 -71970954 + MIR SINE MIR 189 228 -34 25 0 0 0 chr11 76813542 76813567 -71969905 + AT_rich Low_complexity Low_complexity 1 25 0 461 227 133 0 chr11 76813763 76813913 -71969559 - MIR SINE MIR -15 247 78 350 259 132 40 chr11 76814186 76814360 -71969112 - MIR SINE MIR -70 192 3 288 314 64 7 chr11 76814666 76814806 -71968666 - MIR SINE MIR -17 245 98 716 225 30 58 chr11 76814833 76815074 -71968398 + L1MA10 LINE L1 5942 6334 0 221 318 103 8 chr11 76815359 76815485 -71967987 + MIR SINE MIR 20 157 -105 1503 162 121 53 chr11 76815495 76815835 -71967637 - MLT1A1 LTR MaLR -2 363 1 352 293 121 0 chr11 76815835 76815975 -71967497 - MIR SINE MIR -8 254 98 340 311 25 0 chr11 76815971 76816093 -71967379 - MIR SINE MIR -89 173 49 * 220 341 73 0 chr11 76816310 76816433 -71967039 - MIR SINE MIR -93 169 38 505 244 7 37 chr11 76818031 76818166 -71965306 - MIR SINE MIR -98 164 34 2392 88 0 0 chr11 76818317 76818613 -71964859 - AluSg SINE Alu -14 296 1 1987 92 0 11 chr11 76818836 76819098 -71964374 + AluY SINE Alu 1 259 -52 2251 123 0 0 chr11 76819620 76819928 -71963544 + AluSg SINE Alu 1 308 -2 525 336 127 15 chr11 76820003 76820342 -71963130 - L2 LINE L2 -4 3268 2892 1781 134 50 11 chr11 76820775 76821058 -71962414 - AluJb SINE Alu -18 294 1 2512 65 0 13 chr11 76821065 76821372 -71962100 - AluY SINE Alu -8 303 1 610 171 0 18 chr11 76821474 76821585 -71961887 + FLAM_C SINE Alu 27 135 -8 624 243 19 29 chr11 76821840 76822046 -71961426 - MIR SINE MIR 0 262 59 2130 134 0 0 chr11 76822181 76822488 -71960984 + AluSx SINE Alu 1 307 -5 264 320 31 55 chr11 76822752 76822880 -71960592 + MIR SINE MIR 20 144 -64 787 185 0 0 chr11 76822894 76823024 -71960448 + FLAM_A SINE Alu 1 130 -3 406 158 7 158 chr11 76823689 76823804 -71959668 + Charlie1 DNA MER1_type 1488 1576 -1185 2203 114 0 3 chr11 76823804 76824101 -71959371 + AluSx SINE Alu 2 297 -15 406 158 7 158 chr11 76824101 76824137 -71959335 + Charlie1 DNA MER1_type 1576 1616 -1145 661 213 0 0 chr11 76824138 76824260 -71959212 + FLAM_A SINE Alu 2 123 -10 752 144 17 0 chr11 76824393 76824511 -71958961 - Tigger3(Golem) DNA MER2_type -2886 143 24 214 272 12 25 chr11 76824533 76824614 -71958858 - MIR SINE MIR -10 252 173 218 349 64 44 chr11 76824669 76824918 -71958554 + L2 LINE L2 2946 3199 -73 186 204 45 0 chr11 76824973 76825017 -71958455 - MIR3 SINE MIR -54 154 109 2259 114 0 3 chr11 76825204 76825503 -71957969 - AluSq SINE Alu -15 298 1 1724 171 0 24 chr11 76825611 76825909 -71957563 - AluJo SINE Alu -21 291 1 2066 201 62 46 chr11 76826014 76826177 -71957295 + L1ME1 LINE L1 5423 5582 -584 2187 124 0 3 chr11 76826177 76826475 -71956997 - AluSx SINE Alu -15 297 1 2066 201 62 46 chr11 76826475 76826971 -71956501 + L1ME1 LINE L1 5582 6069 -97 315 0 0 0 chr11 76826971 76827006 -71956466 + (CA)n Simple_repeat Simple_repeat 2 36 0 2066 201 62 46 chr11 76827006 76827072 -71956400 + L1ME1 LINE L1 6069 6013 -153 1925 166 0 3 chr11 76827072 76827368 -71956104 + AluJo SINE Alu 1 295 -17 2066 201 62 46 chr11 76827368 76827489 -71955983 + L1ME1 LINE L1 6012 6130 -36 506 274 110 59 chr11 76827790 76828230 -71955242 + L1ME4a LINE L1 5568 6033 -88 2260 98 0 3 chr11 76828230 76828525 -71954947 - AluSc SINE Alu -15 294 1 506 274 110 59 chr11 76828525 76828540 -71954932 + L1ME4a LINE L1 6033 6046 -75 775 157 0 15 chr11 76828586 76828720 -71954752 - FLAM_C SINE Alu 0 143 12 2303 82 0 14 chr11 76829082 76829405 -71954067 - AluSx SINE Alu 0 312 1 1933 135 13 35 chr11 76829661 76829973 -71953499 - AluJb SINE Alu -6 306 2 247 300 4 89 chr11 76830520 76830718 -71952754 + MIR SINE MIR 30 212 -50 2534 54 0 3 chr11 76830986 76831282 -71952190 - AluY SINE Alu -16 295 1 1736 146 0 67 chr11 76831302 76831448 -71952024 + AluJo SINE Alu 7 122 -190 1974 138 0 20 chr11 76831448 76831752 -71951720 + AluSx SINE Alu 13 310 -2 1736 146 0 67 chr11 76831752 76831920 -71951552 + AluJo SINE Alu 122 300 -12 2264 86 28 0 chr11 76832467 76832758 -71950714 + AluSq SINE Alu 1 299 -14 389 307 185 17 chr11 76833366 76833604 -71949868 + L2 LINE L2 2995 3272 0 292 206 43 11 chr11 76833776 76833868 -71949604 + MIR SINE MIR 48 142 -120 1883 174 0 0 chr11 76833876 76834169 -71949303 + AluJo SINE Alu 1 293 -19 393 169 60 36 chr11 76834393 76834476 -71948996 + MLT1C LTR MaLR 8 92 -375 1432 220 46 35 chr11 76834518 76834886 -71948586 + MLT1C LTR MaLR 96 467 0 2302 86 0 19 chr11 76835012 76835325 -71948147 + AluSx SINE Alu 1 307 -5 289 286 123 18 chr11 76835509 76835680 -71947792 + MIR SINE MIR 20 208 -54 1690 163 32 21 chr11 76836201 76836483 -71946989 + AluJb SINE Alu 9 293 -19 1227 192 35 73 chr11 76836483 76836796 -71946676 - Charlie4a DNA MER1_type -206 302 2 228 250 8 137 chr11 76836899 76837023 -71946449 + MIR3 SINE MIR 9 116 -92 183 146 0 0 chr11 76837127 76837168 -71946304 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 2240 108 0 16 chr11 76837451 76837767 -71945705 + AluSx SINE Alu 1 311 -1 1379 180 77 168 chr11 76837864 76837923 -71945549 - L1MC5 LINE L1 -583 7378 7315 235 35 0 0 chr11 76837923 76837952 -71945520 + AluYa5 SINE Alu 1 29 -272 2387 36 43 0 chr11 76837952 76838228 -71945244 + AluYa5 SINE Alu 8 295 -16 1379 180 77 168 chr11 76838228 76838983 -71944489 - L1MC5 LINE L1 -644 7317 6612 2549 63 0 13 chr11 76838984 76839299 -71944173 + AluY SINE Alu 1 311 0 522 169 30 72 chr11 76839362 76839528 -71943944 - L1MC5 LINE L1 -2334 5474 5316 2424 88 3 25 chr11 76839528 76839847 -71943625 - AluSq SINE Alu -1 312 1 249 33 0 0 chr11 76839859 76839889 -71943583 + (TGGGGG)n Simple_repeat Simple_repeat 4 33 0 2048 142 0 0 chr11 76839889 76840170 -71943302 - AluSx SINE Alu -28 284 1 2722 208 75 39 chr11 76840287 76840395 -71943077 - L1MD2 LINE L1 -54 6112 6009 1934 165 0 3 chr11 76840395 76840692 -71942780 - AluJo SINE Alu -16 296 1 2722 208 75 39 chr11 76840692 76840758 -71942714 - L1MD2 LINE L1 -157 6009 5947 297 0 0 0 chr11 76840758 76840791 -71942681 + (TG)n Simple_repeat Simple_repeat 2 34 0 2722 208 75 39 chr11 76840791 76841286 -71942186 - L1MD2 LINE L1 -219 5947 5578 2187 124 0 3 chr11 76841286 76841584 -71941888 + AluSx SINE Alu 1 297 -15 2722 208 75 39 chr11 76841584 76841746 -71941726 - L1MD2 LINE L1 -588 5578 5423 1765 172 0 17 chr11 76841852 76842148 -71941324 + AluJo SINE Alu 1 291 -21 2292 112 0 3 chr11 76842256 76842559 -71940913 + AluSq SINE Alu 1 302 -11 1936 148 14 20 chr11 76842634 76842931 -71940541 + AluJb SINE Alu 1 295 -17 1731 159 37 4 chr11 76843336 76843660 -71939812 - AluJb SINE Alu 0 336 4 223 213 0 0 chr11 76843850 76843897 -71939575 - L2 LINE L2 -5 3308 3262 545 284 85 7 chr11 76843913 76843951 -71939521 - L1M4 LINE L1 -1921 4225 4191 228 67 0 0 chr11 76843951 76843981 -71939491 + (ATTG)n Simple_repeat Simple_repeat 3 32 0 1533 192 7 7 chr11 76843984 76844260 -71939212 - AluJo SINE Alu -36 276 1 545 284 85 7 chr11 76844260 76844488 -71938984 - L1M4 LINE L1 -1956 4190 3934 672 161 116 0 chr11 76844488 76844600 -71938872 + FLAM_C SINE Alu 2 126 -17 2431 88 0 0 chr11 76844624 76844919 -71938553 - AluSc SINE Alu -14 295 1 3261 255 70 36 chr11 76844921 76845567 -71937905 - L1M4 LINE L1 -2208 3938 3315 2014 104 76 0 chr11 76845567 76845855 -71937617 - AluSx SINE Alu -2 310 1 3261 255 70 36 chr11 76845855 76846257 -71937215 - L1M4 LINE L1 -2831 3315 2928 2390 101 3 0 chr11 76846257 76846565 -71936907 - AluSg SINE Alu -1 309 1 3261 255 70 36 chr11 76846565 76846900 -71936572 - L1M4 LINE L1 -3218 2928 2507 2244 116 0 0 chr11 76847094 76847387 -71936085 + AluSx SINE Alu 2 294 -18 1304 226 127 20 chr11 76847391 76847793 -71935679 + MLT2B1 LTR ERVL 1 445 -75 459 0 0 0 chr11 76847794 76847845 -71935627 + (TG)n Simple_repeat Simple_repeat 1 51 0 12345 161 20 35 chr11 76847846 76849882 -71933590 + ERVL LTR ERVL 1559 3564 -2200 2222 116 0 0 chr11 76849882 76850175 -71933297 + AluSq SINE Alu 5 297 -16 12345 161 20 35 chr11 76850175 76850297 -71933175 + ERVL LTR ERVL 3564 3686 -2078 1332 103 6 6 chr11 76850362 76850537 -71932935 + AluSx SINE Alu 1 175 -137 225 94 0 0 chr11 76850559 76850591 -71932881 + (A)n Simple_repeat Simple_repeat 1 32 0 2174 115 0 16 chr11 76850683 76850987 -71932485 - AluSx SINE Alu -9 303 5 800 169 0 0 chr11 76851220 76851344 -71932128 - FRAM SINE Alu -15 161 38 2231 96 10 3 chr11 76851406 76851699 -71931773 + AluSx SINE Alu 3 297 -15 427 267 35 0 chr11 76851830 76851946 -71931526 + L1ME4a LINE L1 6000 6119 -2 788 277 98 75 chr11 76852019 76852489 -71930983 + MLT1L LTR MaLR 135 615 0 1104 152 29 0 chr11 76853232 76853403 -71930069 + FRAM SINE Alu 1 176 0 918 94 6 19 chr11 76853417 76853576 -71929896 + (GGAGA)n Simple_repeat Simple_repeat 2 158 0 192 163 286 0 chr11 76853578 76853627 -71929845 + L2 LINE L2 2704 2766 -548 2118 115 3 10 chr11 76853720 76854015 -71929457 - AluSc SINE Alu -16 293 1 2303 118 0 0 chr11 76854371 76854677 -71928795 + AluSg SINE Alu 1 306 -4 1487 171 87 3 chr11 76854942 76855228 -71928244 + AluJo SINE Alu 1 310 -2 425 125 16 0 chr11 76855369 76855433 -71928039 + MER2 DNA MER2_type 30 94 -251 2101 108 37 10 chr11 76855434 76855729 -71927743 + AluSx SINE Alu 1 303 -9 1737 181 3 7 chr11 76855897 76856196 -71927276 + AluJo SINE Alu 1 298 -14 1151 210 40 118 chr11 76856254 76856332 -71927140 - MLT1H LTR MaLR -6 543 460 2267 108 3 0 chr11 76856332 76856628 -71926844 - AluSx SINE Alu -15 297 1 1151 210 40 118 chr11 76856628 76857126 -71926346 - MLT1H LTR MaLR -89 460 12 981 268 93 3 chr11 76857211 76857513 -71925959 + L2 LINE L2 2438 2766 -548 2062 80 8 8 chr11 76857566 76857828 -71925644 - AluSc SINE Alu -21 288 27 2057 199 68 11 chr11 76857828 76858296 -71925176 + LTR22 LTR ERVK 11 505 -4 307 71 0 0 chr11 76858301 76858343 -71925129 - AluSc SINE Alu -259 44 3 535 325 142 24 chr11 76858344 76858759 -71924713 + L2 LINE L2 2849 3312 -1 2214 135 0 0 chr11 76858778 76859081 -71924391 + AluSx SINE Alu 1 303 -9 1017 143 0 79 chr11 76859359 76859548 -71923924 + FRAM SINE Alu 1 174 -2 935 165 0 80 chr11 76859934 76860122 -71923350 + FRAM SINE Alu 1 173 -3 1329 170 24 77 chr11 76860164 76860240 -71923232 + Charlie4a DNA MER1_type 39 117 -1844 2430 84 58 103 chr11 76860240 76860622 -71922850 - LTR56 LTR ERV1 0 445 86 2475 93 3 0 chr11 76860622 76860933 -71922539 - AluSx SINE Alu 0 312 1 2430 84 58 103 chr11 76860933 76861016 -71922456 - LTR56 LTR ERV1 -359 86 1 1329 170 24 77 chr11 76861016 76861315 -71922157 + Charlie4a DNA MER1_type 117 394 -114 687 198 26 0 chr11 76861347 76861463 -71922009 + FLAM_C SINE Alu 3 121 -22 206 61 0 30 chr11 76861463 76861496 -71921976 + (TAA)n Simple_repeat Simple_repeat 2 33 0 2439 177 11 2 chr11 76861500 76861935 -71921537 - MER65C LTR ERV1 -20 441 3 1767 149 0 68 chr11 76861980 76862303 -71921169 + AluJo SINE Alu 1 301 -11 997 116 9 10 chr11 76862322 76862492 -71920980 - L1M3 LINE L1 -424 5759 5592 2238 136 0 0 chr11 76863249 76863558 -71919914 + AluSx SINE Alu 1 309 -3 1907 159 0 53 chr11 76863981 76864302 -71919170 + AluJb SINE Alu 5 308 -4 197 310 35 0 chr11 76864673 76864731 -71918741 + L2 LINE L2 3193 3252 -20 2293 101 20 0 chr11 76865463 76865761 -71917711 - AluSq SINE Alu -9 304 1 869 220 150 55 chr11 76865838 76866312 -71917160 + MLT1H LTR MaLR 1 549 0 1951 238 67 8 chr11 76866469 76866948 -71916524 - MLT1J LTR MaLR 0 511 5 532 361 36 32 chr11 76867045 76867205 -71916267 - L1M4 LINE L1 -1519 4627 4464 2406 69 7 3 chr11 76867205 76867508 -71915964 - AluY SINE Alu -7 304 1 532 361 36 32 chr11 76867508 76867596 -71915876 - L1M4 LINE L1 -1682 4464 4378 207 0 0 0 chr11 76867900 76867923 -71915549 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2301 99 0 35 chr11 76867928 76868104 -71915368 - AluSq SINE Alu -10 303 141 2224 125 0 0 chr11 76868104 76868400 -71915072 - AluY SINE Alu -15 296 1 2301 99 0 35 chr11 76868400 76868537 -71914935 - AluSq SINE Alu -172 141 1 369 339 55 12 chr11 76868547 76868712 -71914760 - L1M4 LINE L1 -1828 4318 4147 272 311 67 8 chr11 76868857 76868976 -71914496 - MIR SINE MIR -76 186 61 720 91 0 0 chr11 76869174 76869273 -71914199 - Alu SINE Alu -2 308 210 2207 106 6 50 chr11 76869317 76869639 -71913833 - AluSx SINE Alu -4 308 1 986 180 23 0 chr11 76869776 76869948 -71913524 - FRAM SINE Alu 0 176 1 2236 135 0 0 chr11 76870550 76870862 -71912610 + AluSx SINE Alu 1 312 0 1987 160 30 38 chr11 76871109 76871509 -71911963 - MLT2C1 LTR ERVL 0 397 1 508 157 176 0 chr11 76871512 76871614 -71911858 - FRAM SINE Alu -53 123 4 22 35 0 0 chr11 76871619 76871648 -71911824 + AT_rich Low_complexity Low_complexity 1 29 0 2820 156 73 38 chr11 76871652 76871783 -71911689 + L1MB7 LINE L1 5271 5396 -782 2500 66 0 10 chr11 76871783 76872088 -71911384 + AluY SINE Alu 2 303 -8 2820 156 73 38 chr11 76872088 76872477 -71910995 + L1MB7 LINE L1 5396 5819 -359 1971 157 16 0 chr11 76872477 76872783 -71910689 + AluJo SINE Alu 1 311 -1 2820 156 73 38 chr11 76872783 76872888 -71910584 + L1MB7 LINE L1 5819 5919 -259 790 233 0 34 chr11 76872888 76873064 -71910408 - FRAM SINE Alu -6 170 1 745 140 13 51 chr11 76873066 76873186 -71910286 + L1MB7 LINE L1 5911 6025 -159 2434 100 3 0 chr11 76873186 76873497 -71909975 - AluSx SINE Alu 0 312 1 745 140 13 51 chr11 76873497 76873533 -71909939 + L1MB7 LINE L1 6025 6061 -123 2221 105 0 3 chr11 76873533 76873828 -71909644 + AluSg SINE Alu 1 294 -16 659 211 0 8 chr11 76873865 76873988 -71909484 + FLAM_A SINE Alu 2 123 -10 2734 151 124 112 chr11 76873989 76874079 -71909393 + Charlie1 DNA MER1_type 1606 1693 -1068 2369 96 0 0 chr11 76874079 76874372 -71909100 - AluSx SINE Alu -19 293 1 2734 151 124 112 chr11 76874372 76874731 -71908741 + Charlie1 DNA MER1_type 1693 2046 -715 1561 168 42 32 chr11 76874731 76875016 -71908456 + AluJb SINE Alu 1 288 -24 2734 151 124 112 chr11 76875016 76875039 -71908433 + Charlie1 DNA MER1_type 2046 2067 -694 1453 179 9 144 chr11 76875039 76875468 -71908004 + MLT1A2 LTR MaLR 4 374 0 2734 151 124 112 chr11 76875468 76875717 -71907755 + Charlie1 DNA MER1_type 2067 2312 -449 1061 110 30 80 chr11 76875717 76875917 -71907555 + MER30B DNA MER1_type 1 190 0 2734 151 124 112 chr11 76875917 76875970 -71907502 + Charlie1 DNA MER1_type 2312 2363 -398 2281 91 0 10 chr11 76875970 76876268 -71907204 + AluSg SINE Alu 1 295 -15 2734 151 124 112 chr11 76876268 76876441 -71907031 + Charlie1 DNA MER1_type 2363 2568 -193 1590 149 8 12 chr11 76876453 76876694 -71906778 + AluJo SINE Alu 9 248 -64 328 228 222 12 chr11 76876760 76876927 -71906545 + L1ME3A LINE L1 5800 6001 -169 28 0 0 0 chr11 76876995 76877023 -71906449 + AT_rich Low_complexity Low_complexity 1 28 0 238 311 19 57 chr11 76877044 76877150 -71906322 - MER5B DNA MER1_type -60 118 17 2133 122 7 3 chr11 76877188 76877483 -71905989 + AluSx SINE Alu 1 296 -16 410 259 108 88 chr11 76877524 76877775 -71905697 + MIR SINE MIR 2 257 -5 202 260 0 140 chr11 76877787 76877841 -71905631 + MIR SINE MIR 65 100 -162 1726 191 27 0 chr11 76877841 76878135 -71905337 - AluJo SINE Alu -10 302 1 202 260 0 140 chr11 76878135 76878180 -71905292 + MIR SINE MIR 100 150 -112 265 146 271 0 chr11 76878838 76878907 -71904565 + MER58 DNA MER1_type 1 70 -145 183 156 0 0 chr11 76878917 76878949 -71904523 + GA-rich Low_complexity Low_complexity 3 34 0 239 319 11 32 chr11 76878953 76879047 -71904425 + G-rich Low_complexity Low_complexity 4 95 0 546 132 175 26 chr11 76879098 76879212 -71904260 + FLAM_C SINE Alu 2 132 -1 278 280 50 40 chr11 76879725 76879825 -71903647 + MIR SINE MIR 51 151 -57 493 235 175 22 chr11 76880023 76880206 -71903266 - MIR SINE MIR -3 259 49 1640 169 14 7 chr11 76880439 76880723 -71902749 - AluJo SINE Alu -26 286 1 439 152 0 0 chr11 76880761 76880840 -71902632 - L1MB4 LINE L1 -34 6146 6068 1998 110 40 0 chr11 76880854 76881153 -71902319 - AluSq SINE Alu 0 310 1 246 271 57 29 chr11 76881168 76881238 -71902234 - MIR SINE MIR -103 105 34 2260 95 10 3 chr11 76884062 76884366 -71899106 - AluSp SINE Alu -7 306 1 23 33 0 0 chr11 76884430 76884460 -71899012 + AT_rich Low_complexity Low_complexity 1 30 0 213 214 22 11 chr11 76885287 76885376 -71898096 + CT-rich Low_complexity Low_complexity 1 90 0 296 364 105 0 chr11 76886587 76886749 -71896723 + L2 LINE L2 2985 3163 -109 264 297 135 0 chr11 76887416 76887542 -71895930 + MIR SINE MIR 47 192 -70 633 270 7 0 chr11 76887555 76887692 -71895780 - MER5B DNA MER1_type 0 178 41 547 265 122 16 chr11 76887702 76887891 -71895581 + MIR SINE MIR 26 234 -28 298 79 0 0 chr11 76888046 76888084 -71895388 - tRNA-Lys-AAG tRNA tRNA -38 38 1 226 210 170 90 chr11 76888141 76888241 -71895231 - MIR SINE MIR -67 141 34 334 293 30 150 chr11 76888610 76889010 -71894462 + L2 LINE L2 2897 3248 -24 1765 166 10 51 chr11 76889369 76889682 -71893790 + AluJb SINE Alu 1 300 -12 275 250 143 0 chr11 76889781 76889865 -71893607 - L2 LINE L2 -9 3263 3168 1133 186 65 0 chr11 76890331 76890546 -71892926 + AluJo SINE Alu 1 229 -83 1695 147 35 25 chr11 76890546 76890831 -71892641 + AluJb SINE Alu 23 310 -2 252 323 11 11 chr11 76892122 76892215 -71891257 - MIR3 SINE MIR -15 193 101 371 283 125 0 chr11 76892717 76892837 -71890635 - MIR SINE MIR -14 248 114 * 822 261 91 70 chr11 76892836 76893418 -71890054 - L2 LINE L2 0 3272 2673 355 288 85 33 chr11 76893483 76893695 -71889777 - L2 LINE L2 -613 2701 2479 585 229 10 80 chr11 76893869 76894070 -71889402 - MIR SINE MIR -33 229 43 220 306 141 28 chr11 76894201 76894449 -71889023 - L2 LINE L2 -433 2881 2606 457 323 47 77 chr11 76895481 76895883 -71887589 + L2 LINE L2 2873 3262 -10 238 228 109 33 chr11 76896011 76896103 -71887369 + L2 LINE L2 3134 3232 -40 232 259 77 141 chr11 76896176 76896318 -71887154 - MER5B DNA MER1_type 0 178 47 1927 127 39 11 chr11 76896318 76896601 -71886871 + AluSg SINE Alu 1 291 -19 232 259 77 141 chr11 76896601 76896628 -71886844 - MER5B DNA MER1_type -131 47 20 272 281 0 0 chr11 76896694 76896758 -71886714 - MIR SINE MIR -143 119 56 328 275 225 68 chr11 76897440 76897720 -71885752 - L2 LINE L2 -8 3264 2941 443 298 22 17 chr11 76897752 76897930 -71885542 + L2 LINE L2 1758 1936 -1378 2093 161 0 0 chr11 76898053 76898364 -71885108 - AluJo SINE Alu -1 311 1 2121 90 0 8 chr11 76898422 76898688 -71884784 + AluSq SINE Alu 34 297 -16 371 349 116 33 chr11 76898922 76899223 -71884249 - L2 LINE L2 -1 3271 2946 268 273 141 23 chr11 76899231 76899359 -71884113 + MIR SINE MIR 110 252 -10 1268 113 48 151 chr11 76899375 76899746 -71883726 + MER7A DNA MER2_type 16 346 0 273 318 104 7 chr11 76902342 76902490 -71880982 + MIR3 SINE MIR 12 175 -33 544 290 153 23 chr11 76902682 76903034 -71880438 - MLT1K LTR MaLR -8 580 183 474 265 78 90 chr11 76903184 76903505 -71879967 - L2 LINE L2 -125 3147 2831 584 139 8 23 chr11 76903804 76903933 -71879539 + C-rich Low_complexity Low_complexity 1 127 0 * 655 138 7 33 chr11 76903806 76903958 -71879514 + CT-rich Low_complexity Low_complexity 2 149 0 651 86 54 0 chr11 76903960 76904053 -71879419 - HY1 scRNA scRNA -14 98 1 381 302 83 6 chr11 76904344 76904513 -71878959 - MIR SINE MIR -34 228 47 180 179 0 0 chr11 76904738 76904777 -71878695 + (TG)n Simple_repeat Simple_repeat 2 40 0 2310 101 0 0 chr11 76905993 76906290 -71877182 + AluSx SINE Alu 1 297 -15 368 250 13 0 chr11 76906913 76906989 -71876483 + Charlie8 DNA MER1_type 16 92 -2325 626 255 158 33 chr11 76906994 76907332 -71876140 + L1ME2 LINE L1 5466 5864 -300 308 241 48 90 chr11 76907320 76907486 -71875986 + L1MEc LINE L1 1910 2068 -4328 * 1486 138 26 0 chr11 76907486 76907718 -71875754 + L1MC3 LINE L1 6448 6685 -1100 2233 101 3 3 chr11 76907727 76908023 -71875449 + AluSx SINE Alu 1 296 -16 1140 124 0 19 chr11 76908023 76908184 -71875288 + AluSg/x SINE Alu 133 290 -20 2339 67 7 0 chr11 76908474 76908759 -71874713 + AluY SINE Alu 1 287 -24 1037 164 0 6 chr11 76908766 76908943 -71874529 + AluSg/x SINE Alu 123 298 -14 690 107 58 189 chr11 76908944 76908998 -71874474 - Tigger2 DNA MER2_type -1542 1176 1117 2078 125 0 0 chr11 76908998 76909278 -71874194 - AluSg SINE Alu -30 280 1 690 107 58 189 chr11 76909278 76909429 -71874043 - Tigger2 DNA MER2_type -1601 1117 998 2093 112 3 11 chr11 76909434 76909756 -71873716 + AluSx SINE Alu 1 320 0 2188 84 11 3 chr11 76910077 76910363 -71873109 - AluSx SINE Alu -9 303 16 2264 101 0 10 chr11 76910901 76911208 -71872264 - AluY SINE Alu -7 304 1 598 202 17 8 chr11 76911389 76911508 -71871964 + FRAM SINE Alu 48 167 -9 764 113 32 24 chr11 76911512 76911636 -71871836 + AluJb SINE Alu 2 126 -186 809 107 0 0 chr11 76911759 76911862 -71871610 - AluSc SINE Alu -206 103 1 701 192 51 62 chr11 76911862 76911941 -71871531 - L1ME LINE L1 -400 5766 5688 1758 159 74 0 chr11 76911941 76912224 -71871248 - AluJb SINE Alu -8 304 1 701 192 51 62 chr11 76912224 76912321 -71871151 - L1ME LINE L1 -478 5688 5592 1788 83 13 0 chr11 76912338 76912566 -71870906 - AluSg/x SINE Alu -16 296 66 475 86 0 29 chr11 76912568 76912638 -71870834 + AluJ/FRAM SINE Alu 232 299 -13 7870 157 62 55 chr11 76912641 76912764 -71870708 - MSTB-int LTR MaLR -70 1581 1460 1604 165 15 4 chr11 76912764 76913030 -71870442 + AluJo SINE Alu 13 281 -31 7870 157 62 55 chr11 76913030 76914123 -71869349 - MSTB-int LTR MaLR -191 1460 350 2344 92 0 20 chr11 76914123 76914426 -71869046 - AluSx SINE Alu -15 297 1 7870 157 62 55 chr11 76914426 76914779 -71868693 - MSTB-int LTR MaLR -1301 350 1 416 104 45 0 chr11 76914779 76914846 -71868626 - MSTB LTR MaLR -2 424 355 2252 126 0 0 chr11 76914846 76915156 -71868316 + AluSx SINE Alu 1 310 -2 416 89 0 0 chr11 76915157 76915213 -71868259 + Alu SINE Alu 2 57 -256 682 238 162 36 chr11 76915328 76915688 -71867784 + L1ME3 LINE L1 5757 6161 -9 289 165 165 33 chr11 76915755 76915846 -71867626 + L1MD3 LINE L1 7493 7595 -400 2266 108 0 0 chr11 76915865 76916162 -71867310 - AluSx SINE Alu -15 297 1 1888 113 56 25 chr11 76916226 76916510 -71866962 - MER1B DNA MER1_type -1 338 46 742 156 170 0 chr11 76916586 76916727 -71866745 - MER46A DNA MER2_type 0 236 72 230 111 0 0 chr11 76917691 76917727 -71865745 - L1MB8 LINE L1 -18 6160 6125 464 227 21 21 chr11 76917744 76917841 -71865631 - AluJb SINE Alu -61 251 155 2191 129 0 0 chr11 76917883 76918186 -71865286 + AluSx SINE Alu 1 303 -9 2219 131 0 6 chr11 76918244 76918558 -71864914 + AluSx SINE Alu 1 312 0 1104 172 6 0 chr11 76918564 76918744 -71864728 + AluJb SINE Alu 132 312 0 719 254 17 30 chr11 76918754 76918943 -71864529 + L1M4 LINE L1 2729 2916 -3230 1719 160 25 4 chr11 76918943 76919224 -71864248 + AluJo SINE Alu 1 287 -25 719 254 17 30 chr11 76919224 76919270 -71864202 + L1M4 LINE L1 2916 2961 -3185 696 189 177 6 chr11 76919274 76919449 -71864023 + L1MB7 LINE L1 5706 5910 -268 2448 57 7 13 chr11 76919450 76919749 -71863723 + AluSg SINE Alu 2 298 -12 349 198 35 0 chr11 76919766 76919852 -71863620 + L1MB7 LINE L1 6096 6184 0 223 28 56 0 chr11 76919886 76919922 -71863550 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 723 188 0 0 chr11 76919926 76920043 -71863429 - FLAM_C SINE Alu -25 118 2 419 102 0 0 chr11 76920045 76920104 -71863368 + L1MB3 LINE L1 6083 6141 -42 1239 226 23 20 chr11 76920104 76920405 -71863067 + AluJo SINE Alu 1 302 -10 1698 143 4 4 chr11 76920432 76920684 -71862788 + AluSx SINE Alu 34 285 -27 255 31 0 0 chr11 76920684 76920716 -71862756 + (CTAAA)n Simple_repeat Simple_repeat 3 34 0 1676 135 97 21 chr11 76920722 76921011 -71862461 + AluSx SINE Alu 1 311 -1 670 142 49 136 chr11 76921122 76921284 -71862188 - MSTB LTR MaLR -68 358 211 2089 114 0 4 chr11 76921287 76921568 -71861904 - AluSc SINE Alu -10 299 20 1763 180 0 3 chr11 76921699 76921982 -71861490 - AluJo SINE Alu -30 282 1 651 193 188 21 chr11 76922479 76922671 -71860801 - MER58A DNA MER1_type 0 224 1 244 310 32 38 chr11 76925507 76925665 -71857807 + L1ME LINE L1 5631 5787 -334 2173 121 3 0 chr11 76925666 76925956 -71857516 + AluSx SINE Alu 1 291 -21 2323 90 0 20 chr11 76926056 76926356 -71857116 - AluSp SINE Alu -19 294 1 1825 143 0 21 chr11 76927141 76927460 -71856012 + AluJb SINE Alu 2 314 0 2145 98 11 0 chr11 76927705 76927981 -71855491 + AluSg SINE Alu 1 279 -31 199 318 9 37 chr11 76928464 76928571 -71854901 - L2 LINE L2 -38 3275 3172 2184 114 7 0 chr11 76928861 76929159 -71854313 + AluSg SINE Alu 1 300 -10 585 203 30 30 chr11 76929506 76929639 -71853833 + FLAM_A SINE Alu 1 133 0 2084 121 7 0 chr11 76929711 76930001 -71853471 + AluY SINE Alu 1 292 -19 823 168 8 0 chr11 76930003 76930134 -71853338 - FRAM SINE Alu -23 153 22 2072 145 0 7 chr11 76930579 76930883 -71852589 - AluJb SINE Alu -8 304 3 1997 150 0 0 chr11 76930891 76931178 -71852294 - AluSx SINE Alu -23 289 3 2519 138 27 62 chr11 76931187 76931496 -71851976 + Tigger1 DNA MER2_type 1956 2244 -174 2055 143 0 3 chr11 76931496 76931796 -71851676 - AluSq SINE Alu -14 299 1 2519 138 27 62 chr11 76931796 76931966 -71851506 + Tigger1 DNA MER2_type 2244 2418 0 301 290 28 35 chr11 76932466 76932611 -71850861 + MIR SINE MIR 94 237 -25 2269 77 10 7 chr11 76932613 76932911 -71850561 - AluY SINE Alu -10 301 3 2346 96 0 19 chr11 76932923 76933235 -71850237 + AluSq SINE Alu 1 306 -7 2171 116 7 3 chr11 76933600 76933901 -71849571 + AluSx SINE Alu 1 302 -10 2552 164 27 16 chr11 76934173 76934662 -71848810 + L1MB3 LINE L1 5611 6104 -79 539 173 0 0 chr11 76934729 76934810 -71848662 - AluJ/FLAM SINE Alu -231 81 1 1374 227 18 48 chr11 76935004 76935024 -71848448 - L1MC4 LINE L1 -476 7566 7547 2247 103 0 13 chr11 76935024 76935326 -71848146 + AluSq SINE Alu 1 298 -15 1374 227 18 48 chr11 76935326 76935701 -71847771 - L1MC4 LINE L1 -495 7547 7183 2669 174 23 67 chr11 76936059 76936309 -71847163 + MER4E LTR ERV1 130 389 -390 1835 146 32 0 chr11 76936309 76936590 -71846882 + AluJo SINE Alu 9 298 -14 2669 174 23 67 chr11 76936590 76936630 -71846842 + MER4E LTR ERV1 389 429 -350 2113 156 6 12 chr11 76936630 76936969 -71846503 - MER1B DNA MER1_type 0 337 1 2669 174 23 67 chr11 76936969 76937275 -71846197 + MER4E LTR ERV1 429 701 -78 601 138 0 0 chr11 76937278 76937372 -71846100 + AluSg/x SINE Alu 210 303 -6 514 71 29 0 chr11 76937382 76937452 -71846020 + MER4D LTR ERV1 832 903 0 872 185 6 19 chr11 76937862 76938019 -71845453 - AluJo SINE Alu -38 274 120 180 0 0 0 chr11 76938150 76938170 -71845302 + (A)n Simple_repeat Simple_repeat 1 20 0 550 139 252 9 chr11 76938784 76938899 -71844573 - AluJo SINE Alu -168 144 2 2210 98 0 41 chr11 76939132 76939450 -71844022 + AluSq SINE Alu 1 305 -8 2615 52 7 3 chr11 76939676 76939986 -71843486 + AluY SINE Alu 1 311 0 2197 38 28 59 chr11 76940123 76940452 -71843020 + AluY SINE Alu 2 321 0 1790 112 0 0 chr11 76940513 76940776 -71842696 + AluSx SINE Alu 55 317 0 799 136 0 8 chr11 76940895 76941013 -71842459 + FLAM_C SINE Alu 1 117 -16 22 0 0 0 chr11 76941013 76941035 -71842437 + AT_rich Low_complexity Low_complexity 1 22 0 1592 151 81 0 chr11 76941057 76941329 -71842143 + AluJo SINE Alu 1 294 -18 663 200 22 65 chr11 76941462 76941647 -71841825 - MER5B DNA MER1_type -1 177 1 200 244 260 8 chr11 76941730 76941853 -71841619 - MIR SINE MIR -56 206 53 830 146 24 0 chr11 76942044 76942167 -71841305 + FLAM_C SINE Alu 1 126 -17 1930 151 3 13 chr11 76942185 76942497 -71840975 + AluSx SINE Alu 1 309 -3 280 221 29 39 chr11 76942504 76942608 -71840864 - Charlie2a DNA MER1_type -2014 848 746 2424 94 0 7 chr11 76942825 76943133 -71840339 - AluSg SINE Alu -4 306 1 2042 134 13 3 chr11 76943650 76943948 -71839524 - AluSq SINE Alu -12 301 1 925 294 75 56 chr11 76944047 76944076 -71839396 + L2 LINE L2 2664 2691 -622 1371 184 60 7 chr11 76944076 76944358 -71839114 - AluJo SINE Alu -15 297 1 925 294 75 56 chr11 76944358 76944766 -71838706 + L2 LINE L2 2691 3116 -197 1876 138 10 55 chr11 76944766 76945100 -71838372 - AluSx SINE Alu 0 312 1 925 294 75 56 chr11 76945100 76945302 -71838170 + L2 LINE L2 3116 3313 0 2246 111 13 3 chr11 76945391 76945698 -71837774 + AluSx SINE Alu 1 310 -2 374 299 116 6 chr11 76945771 76945935 -71837537 + MIR SINE MIR 8 189 -73 2303 99 0 16 chr11 76946292 76946606 -71836866 - AluSx SINE Alu -3 309 1 1111 165 57 101 chr11 76946707 76947023 -71836449 - AluJo SINE Alu 0 302 1 211 314 71 0 chr11 76947268 76947338 -71836134 - L2 LINE L2 -27 3245 3171 1691 149 71 11 chr11 76947772 76948053 -71835419 + AluJo SINE Alu 1 298 -14 243 284 25 25 chr11 76949000 76949081 -71834391 + L1ME LINE L1 1 81 -5989 1515 157 49 29 chr11 76949093 76949399 -71834073 - AluJb SINE Alu 0 312 1 1231 258 39 27 chr11 76949402 76949621 -71833851 + L1ME LINE L1 2323 2538 -3542 1792 155 10 36 chr11 76949621 76949925 -71833547 - AluJo SINE Alu -16 296 1 1231 258 39 27 chr11 76949925 76950194 -71833278 + L1ME LINE L1 2538 2817 -3263 446 224 0 9 chr11 76950186 76950302 -71833170 + L1ME2 LINE L1 6045 6159 -5 * 1649 119 142 8 chr11 76950314 76950575 -71832897 - AluSx SINE Alu -6 296 1 1929 151 10 10 chr11 76950913 76951218 -71832254 + AluSx SINE Alu 1 305 -7 1561 106 156 0 chr11 76951241 76951497 -71831975 + AluSg SINE Alu 1 296 -4 1661 203 3 3 chr11 76951553 76951854 -71831618 + AluJb SINE Alu 1 301 -11 2362 97 0 7 chr11 76951855 76952165 -71831307 + AluSc SINE Alu 1 308 -1 2353 68 0 0 chr11 76952169 76952494 -71830978 + AluY SINE Alu 3 327 0 1952 150 3 0 chr11 76952718 76953018 -71830454 + AluSx SINE Alu 1 301 -11 324 0 0 0 chr11 76953220 76953256 -71830216 + (GA)n Simple_repeat Simple_repeat 1 36 0 209 296 72 48 chr11 76953353 76953478 -71829994 - L2 LINE L2 -212 3060 2933 25 31 0 0 chr11 76953569 76953601 -71829871 + AT_rich Low_complexity Low_complexity 1 32 0 2509 64 3 0 chr11 76953686 76953981 -71829491 + AluY SINE Alu 1 296 -15 2307 97 13 3 chr11 76954291 76954600 -71828872 + AluSp SINE Alu 1 312 -1 228 295 21 32 chr11 76955048 76955143 -71828329 + L1ME3A LINE L1 6051 6144 -26 523 136 56 96 chr11 76955241 76955366 -71828106 + FRAM SINE Alu 55 174 -2 474 282 50 12 chr11 76955380 76955621 -71827851 - L1ME4a LINE L1 -229 5892 5643 2294 99 7 0 chr11 76955627 76955921 -71827551 - AluSq SINE Alu -17 296 1 610 255 160 19 chr11 76956169 76956381 -71827091 + L2 LINE L2 1370 1611 -1703 227 176 59 0 chr11 76956381 76956432 -71827040 - L1MC4 LINE L1 -212 7830 7777 * 1066 173 36 69 chr11 76956416 76956693 -71826779 - L1MC4 LINE L1 -82 7960 7693 275 176 78 0 chr11 76956728 76956779 -71826693 - L1MC5 LINE L1 -832 7129 7075 188 103 51 0 chr11 76956788 76956827 -71826645 + GA-rich Low_complexity Low_complexity 2 42 0 928 211 130 72 chr11 76956837 76956890 -71826582 - L1MC5 LINE L1 -954 7007 6958 330 26 0 0 chr11 76956890 76956929 -71826543 + (TTA)n Simple_repeat Simple_repeat 3 41 0 928 211 130 72 chr11 76956929 76957349 -71826123 - L1MC5 LINE L1 -1003 6958 6614 291 215 0 0 chr11 76957349 76957414 -71826058 + (CATATA)n Simple_repeat Simple_repeat 6 70 0 2370 56 7 26 chr11 76957414 76957716 -71825756 - AluY SINE Alu -15 296 1 22 35 0 0 chr11 76957723 76957752 -71825720 + AT_rich Low_complexity Low_complexity 1 29 0 2127 133 3 0 chr11 76957906 76958199 -71825273 + AluSx SINE Alu 1 294 -18 863 219 50 0 chr11 76958204 76958364 -71825108 - FRAM SINE Alu -15 161 1 1771 248 51 54 chr11 76958783 76959465 -71824007 - L1MC5 LINE L1 -1875 5933 5254 225 291 55 8 chr11 76959624 76959751 -71823721 - L1P LINE L1 -1135 5011 4879 2237 108 7 0 chr11 76959804 76960099 -71823373 - AluSx SINE Alu -12 300 4 1775 145 42 0 chr11 76960180 76960463 -71823009 - AluSx SINE Alu -17 295 1 857 248 15 5 chr11 76960542 76960740 -71822732 + L2 LINE L2 1825 2024 -1290 2411 64 13 0 chr11 76960740 76961038 -71822434 + AluY SINE Alu 1 302 -9 23 0 0 0 chr11 76961335 76961358 -71822114 + AT_rich Low_complexity Low_complexity 1 23 0 2161 125 0 3 chr11 76961364 76961661 -71821811 + AluSq SINE Alu 5 300 -13 216 97 0 0 chr11 76961661 76961692 -71821780 + (TA)n Simple_repeat Simple_repeat 2 32 0 2207 110 0 7 chr11 76961831 76962139 -71821333 + AluSg SINE Alu 1 306 -4 2148 99 28 0 chr11 76962145 76962429 -71821043 + AluSg SINE Alu 1 292 -18 2205 103 3 0 chr11 76962583 76962875 -71820597 - AluSg SINE Alu -17 293 1 269 214 0 0 chr11 76964848 76964890 -71818582 + AluJ/monomer SINE Alu 1 42 -260 2025 134 3 0 chr11 76964911 76965195 -71818277 - AluSq SINE Alu -28 285 1 466 123 46 0 chr11 76965195 76965260 -71818212 + AluJ/FLAM SINE Alu 26 93 -219 222 214 0 0 chr11 76966354 76966410 -71817062 + A-rich Low_complexity Low_complexity 1 56 0 2245 101 7 0 chr11 76967068 76967365 -71816107 - AluSq SINE Alu -14 299 1 2450 83 0 3 chr11 76967630 76967931 -71815541 - AluSq SINE Alu -13 300 1 316 277 47 61 chr11 76968508 76968656 -71814816 - MIR SINE MIR -1 261 116 1751 86 16 12 chr11 76969384 76969628 -71813844 + THE1C LTR MaLR 131 375 0 372 173 144 10 chr11 76969631 76969735 -71813737 - L1M4 LINE L1 -1652 4494 4377 399 89 0 0 chr11 76969738 76969794 -71813678 + (TA)n Simple_repeat Simple_repeat 2 57 0 1539 186 55 3 chr11 76969794 76970084 -71813388 - AluJb SINE Alu -7 305 1 280 206 108 98 chr11 76970238 76970251 -71813221 - L2 LINE L2 0 3272 3261 1956 130 0 7 chr11 76970251 76970558 -71812914 - AluSx SINE Alu 0 305 1 280 206 108 98 chr11 76970558 76970645 -71812827 - L2 LINE L2 -11 3261 3170 219 25 75 0 chr11 76970751 76970791 -71812681 + T-rich Low_complexity Low_complexity 2 44 0 2144 105 0 11 chr11 76970793 76971078 -71812394 - AluSx SINE Alu -30 282 1 393 280 124 55 chr11 76971080 76971337 -71812135 - L2 LINE L2 -12 3301 3027 2445 63 0 3 chr11 76971934 76972235 -71811237 - AluY SINE Alu -11 300 1 404 263 74 63 chr11 76972246 76972421 -71811051 + L2 LINE L2 3119 3295 -18 384 331 58 43 chr11 76972452 76972730 -71810742 - L2 LINE L2 -1734 1580 1299 2387 116 39 33 chr11 76972857 76973219 -71810253 - THE1B LTR MaLR 0 364 1 1789 167 7 10 chr11 76973320 76973454 -71810018 + AluJb SINE Alu 1 134 -178 2356 98 0 0 chr11 76973454 76973750 -71809722 + AluSg SINE Alu 1 296 -14 2518 76 0 0 chr11 76973752 76974056 -71809416 + AluY SINE Alu 3 306 -5 1789 167 7 10 chr11 76974056 76974224 -71809248 + AluJb SINE Alu 135 305 -7 27 29 0 0 chr11 76974224 76974258 -71809214 + AT_rich Low_complexity Low_complexity 1 34 0 198 355 41 47 chr11 76974258 76974427 -71809045 - L2 LINE L2 -2344 970 803 1528 170 33 40 chr11 76974595 76974895 -71808577 + AluJo SINE Alu 1 298 -14 262 387 0 2 chr11 76974938 76975061 -71808411 - MIR SINE MIR -63 145 33 1831 212 70 133 chr11 76975653 76975941 -71807531 - L1 LINE L1 -2039 4107 3802 778 175 18 0 chr11 76975941 76976055 -71807417 + FLAM_C SINE Alu 2 117 -26 352 36 18 18 chr11 76976060 76976115 -71807357 + (TAA)n Simple_repeat Simple_repeat 2 56 0 1831 212 70 133 chr11 76976115 76976551 -71806921 - L1 LINE L1 -2348 3798 3340 2220 125 0 0 chr11 76976551 76976848 -71806624 - AluSx SINE Alu -15 297 1 1831 212 70 133 chr11 76976848 76977049 -71806423 - L1 LINE L1 -2806 3340 3128 2420 166 51 7 chr11 76977054 76977507 -71805965 + MER74A LTR ERVL 1 473 -85 967 207 146 0 chr11 76977630 76977910 -71805562 - L1 LINE L1 -3021 3125 2805 21 0 0 0 chr11 76978169 76978190 -71805282 + AT_rich Low_complexity Low_complexity 1 21 0 2200 100 14 3 chr11 76978746 76979037 -71804435 + AluSc SINE Alu 1 294 -15 1847 161 3 20 chr11 76979270 76979569 -71803903 - AluJo SINE Alu -18 294 1 462 346 38 64 chr11 76979620 76980013 -71803459 + L2 LINE L2 2890 3272 0 216 0 0 0 chr11 76980146 76980170 -71803302 + (A)n Simple_repeat Simple_repeat 1 24 0 240 139 0 0 chr11 76980693 76980729 -71802743 + Alu SINE Alu 1 36 -267 783 142 39 16 chr11 76980848 76980975 -71802497 + AluJo SINE Alu 3 132 -180 226 346 22 37 chr11 76981284 76981420 -71802052 + L2 LINE L2 2550 2683 -631 745 211 21 47 chr11 76981472 76981662 -71801810 + AluJo SINE Alu 118 302 -10 1564 198 0 24 chr11 76981666 76981959 -71801513 + AluJb SINE Alu 1 286 -26 2117 92 19 7 chr11 76981991 76982579 -71800893 + AluSq SINE Alu 1 289 -24 2473 41 7 0 chr11 76982586 76982878 -71800594 - AluY SINE Alu -17 294 1 2257 104 7 0 chr11 76983016 76983314 -71800158 - AluSg SINE Alu -10 300 1 425 301 74 12 chr11 76983446 76983609 -71799863 + MIR SINE MIR 73 245 -17 2066 101 35 0 chr11 76983939 76984225 -71799247 + AluSx SINE Alu 1 296 -16 234 256 158 12 chr11 76984923 76985005 -71798467 + MIR3 SINE MIR 15 108 -100 2316 85 10 0 chr11 76985130 76985435 -71798037 - AluSg SINE Alu -1 309 2 296 79 0 0 chr11 76985981 76986019 -71797453 - AluJb SINE Alu -194 108 71 384 212 152 0 chr11 76986222 76986321 -71797151 + MIR SINE MIR 62 175 -87 1649 186 0 39 chr11 76986565 76986728 -71796744 - AluJo SINE Alu -16 296 128 2599 54 0 19 chr11 76986728 76987042 -71796430 - AluY SINE Alu -3 308 1 2485 72 0 0 chr11 76987042 76987347 -71796125 - AluY SINE Alu -6 305 1 1649 186 0 39 chr11 76987347 76987488 -71795984 - AluJo SINE Alu -182 130 3 2135 127 3 0 chr11 76987541 76987848 -71795624 - AluJb SINE Alu -4 308 1 230 384 65 60 chr11 76987930 76988072 -71795400 + L2 LINE L2 3039 3184 -88 2070 127 0 16 chr11 76988072 76988380 -71795092 - AluJb SINE Alu -7 305 3 230 384 65 60 chr11 76988380 76988469 -71795003 + L2 LINE L2 3184 3271 -1 232 199 145 18 chr11 76988495 76988549 -71794923 - MIR SINE MIR -135 73 20 727 206 0 0 chr11 76988590 76988716 -71794756 - FLAM_A SINE Alu -3 130 5 203 277 108 24 chr11 76989353 76989436 -71794036 + L2 LINE L2 3188 3277 -36 365 267 35 0 chr11 76989526 76989642 -71793830 - MIR SINE MIR -51 211 92 * 405 353 138 23 chr11 76989633 76989730 -71793742 - L2 LINE L2 -4 3309 3225 2271 104 3 3 chr11 76989730 76990029 -71793443 - AluSp SINE Alu -14 299 1 405 353 138 23 chr11 76990029 76990373 -71793099 - L2 LINE L2 -88 3225 2817 749 198 0 0 chr11 76990408 76990519 -71792953 + FLAM_C SINE Alu 6 116 -27 901 43 26 0 chr11 76990524 76990641 -71792831 - BC200 scRNA scRNA -53 147 28 1624 100 17 8 chr11 76990752 76990993 -71792479 - AluSx SINE Alu -69 243 1 1754 144 40 67 chr11 76990995 76991370 -71792102 + L1MC1 LINE L1 5601 5965 -368 525 144 33 0 chr11 76991393 76991483 -71791989 - L1MC1 LINE L1 0 6333 6241 21 71 0 0 chr11 76991513 76991555 -71791917 + AT_rich Low_complexity Low_complexity 1 42 0 2246 115 0 7 chr11 76991555 76991880 -71791592 + AluSx SINE Alu 1 312 0 713 162 0 9 chr11 76991880 76991991 -71791481 - AluJo/FLAM SINE Alu -200 112 3 2163 113 10 0 chr11 76992085 76992385 -71791087 + AluSp SINE Alu 1 303 -10 197 316 93 50 chr11 76992427 76992566 -71790906 - L2 LINE L2 -32 3240 3096 2044 112 29 29 chr11 76992577 76992890 -71790582 + AluSq SINE Alu 1 313 0 840 183 61 30 chr11 76993035 76993199 -71790273 + AluJb SINE Alu 136 304 -8 1795 160 26 26 chr11 76993486 76993612 -71789860 + AluJb SINE Alu 1 126 -186 2469 74 0 0 chr11 76993612 76993911 -71789561 + AluY SINE Alu 1 299 -12 1795 160 26 26 chr11 76993911 76994096 -71789376 + AluJb SINE Alu 125 312 0 2473 70 3 0 chr11 76994250 76994548 -71788924 + AluSc SINE Alu 1 299 -10 222 197 66 66 chr11 76994784 76994845 -71788627 + L2 LINE L2 3173 3233 -39 2077 130 7 16 chr11 76995017 76995151 -71788321 + AluSx SINE Alu 1 135 -177 1818 123 0 4 chr11 76995151 76995402 -71788070 + AluSx SINE Alu 49 298 -14 2077 130 7 16 chr11 76995402 76995575 -71787897 + AluSx SINE Alu 135 305 -7 651 102 42 59 chr11 76995615 76995733 -71787739 + FLAM_A SINE Alu 17 132 -10 942 190 11 17 chr11 76995893 76996072 -71787400 + AluJo SINE Alu 113 290 -22 1241 190 48 22 chr11 76996072 76996341 -71787131 + AluJo SINE Alu 31 306 -6 617 203 36 14 chr11 76996349 76996487 -71786985 + MIR SINE MIR 34 174 -88 885 165 57 0 chr11 76996487 76996645 -71786827 - AluSg/x SINE Alu -9 303 137 3390 208 64 29 chr11 76996663 76996763 -71786709 - L1MC4a LINE L1 -1 7807 7712 1879 81 47 51 chr11 76996763 76997059 -71786413 - AluSg SINE Alu -15 295 1 3390 208 64 29 chr11 76997059 76997784 -71785688 - L1MC4a LINE L1 -96 7712 7013 574 191 0 0 chr11 76997988 76998077 -71785395 + FRAM SINE Alu 69 157 -19 308 295 9 18 chr11 76998123 76998235 -71785237 + L1MC5 LINE L1 7805 7915 -46 2063 148 0 0 chr11 76998397 76998700 -71784772 + AluSx SINE Alu 1 303 -9 2466 91 32 32 chr11 76998700 76999072 -71784400 + L1PB1 LINE L1 5777 6148 -3 1578 175 3 60 chr11 76999116 76999430 -71784042 + AluJo SINE Alu 1 296 -16 814 186 0 0 chr11 76999433 76999551 -71783921 + FLAM_A SINE Alu 1 118 -15 27 0 0 0 chr11 76999569 76999596 -71783876 + AT_rich Low_complexity Low_complexity 1 27 0 1371 108 33 58 chr11 76999804 76999902 -71783570 - L1MB3 LINE L1 -267 5916 5817 1904 149 0 23 chr11 76999902 77000210 -71783262 - AluSx SINE Alu -11 301 1 1371 108 33 58 chr11 77000210 77000352 -71783120 - L1MB3 LINE L1 -366 5817 5682 1737 153 47 4 chr11 77000379 77000654 -71782818 - AluJo SINE Alu -21 291 5 995 165 30 0 chr11 77000687 77000851 -71782621 + FAM SINE Alu 1 169 -6 1971 260 94 50 chr11 77000913 77001730 -71781742 + HAL1 LINE L1 152 932 -1575 1938 154 10 0 chr11 77001730 77002022 -71781450 + AluSx SINE Alu 1 295 -17 1971 260 94 50 chr11 77002022 77002093 -71781379 + HAL1 LINE L1 932 998 -1509 1765 172 3 3 chr11 77002093 77002389 -71781083 + AluSx SINE Alu 6 301 -11 1971 260 94 50 chr11 77002389 77002523 -71780949 + HAL1 LINE L1 998 1220 -1287 1093 201 41 30 chr11 77002523 77002792 -71780680 + AluJo SINE Alu 1 272 -40 1550 88 17 55 chr11 77002823 77002983 -71780489 - AluSx SINE Alu -83 229 79 2556 59 0 0 chr11 77002983 77003288 -71780184 + AluY SINE Alu 2 306 -5 1550 88 17 55 chr11 77003288 77003365 -71780107 - AluSx SINE Alu -233 79 1 636 247 67 59 chr11 77003518 77003757 -71779715 - MIR SINE MIR -10 252 12 1500 168 69 39 chr11 77003853 77004187 -71779285 + Charlie1b DNA MER1_type 1 344 -179 1359 151 14 5 chr11 77004189 77004401 -71779071 + AluSx SINE Alu 1 214 -98 9771 48 1 112 chr11 77005040 77006597 -71776875 - SVA Other Other -2 1384 1 278 353 57 0 chr11 77006632 77006754 -71776718 + L2 LINE L2 1783 1911 -1403 1860 147 0 7 chr11 77006767 77007060 -71776412 + AluJb SINE Alu 1 291 -21 2192 98 0 7 chr11 77007061 77007357 -71776115 + AluSq SINE Alu 1 294 -19 548 238 7 7 chr11 77007359 77007502 -71775970 - L1MB7 LINE L1 -7 6177 6035 2174 94 10 3 chr11 77007511 77007809 -71775663 + AluSq SINE Alu 2 301 -12 2080 85 0 49 chr11 77008053 77008227 -71775245 - AluSx SINE Alu -5 307 153 1965 125 0 16 chr11 77008227 77008531 -71774941 - AluSx SINE Alu -13 299 1 2080 85 0 49 chr11 77008531 77008661 -71774811 - AluSx SINE Alu -159 153 18 1223 183 17 39 chr11 77008765 77008831 -71774641 - L1MB7 LINE L1 -23 6161 6095 2167 69 14 3 chr11 77008831 77009120 -71774352 - AluY SINE Alu -19 292 1 1223 183 17 39 chr11 77009120 77009342 -71774130 - L1MB7 LINE L1 -89 6095 5913 2680 217 84 29 chr11 77009342 77010097 -71773375 + MER52A LTR ERV1 12 886 -869 1983 119 10 7 chr11 77010099 77010394 -71773078 + AluSx SINE Alu 3 298 -14 1933 132 0 3 chr11 77010706 77011002 -71772470 - AluJb SINE Alu -17 295 1 397 209 11 22 chr11 77011030 77011121 -71772351 - Charlie1 DNA MER1_type 0 2761 2672 642 215 11 6 chr11 77011127 77011304 -71772168 + CT-rich Low_complexity Low_complexity 3 180 0 585 186 85 0 chr11 77011332 77011450 -71772022 - FAM SINE Alu -57 128 1 2147 93 3 0 chr11 77011480 77011769 -71771703 + AluSx SINE Alu 1 290 -22 22 56 0 0 chr11 77011805 77011841 -71771631 + AT_rich Low_complexity Low_complexity 1 36 0 1983 99 7 27 chr11 77011842 77012156 -71771316 + AluSq SINE Alu 1 308 0 1064 116 0 0 chr11 77012292 77012438 -71771034 - AluSq/x SINE Alu -166 146 1 519 279 76 0 chr11 77012446 77012618 -71770854 + L2 LINE L2 2100 2284 -1030 2226 99 3 3 chr11 77012748 77013052 -71770420 + AluSp SINE Alu 1 304 -9 1704 161 3 7 chr11 77013183 77013474 -71769998 + AluJb SINE Alu 1 290 -22 760 195 0 0 chr11 77013549 77013677 -71769795 + AluJo/FLAM SINE Alu 1 128 -174 2085 86 65 0 chr11 77013680 77013970 -71769502 + AluSg SINE Alu 2 310 0 1883 153 0 7 chr11 77014036 77014336 -71769136 + AluSx SINE Alu 1 298 -14 217 256 64 39 chr11 77014351 77014429 -71769043 + L2 LINE L2 3234 3313 0 979 243 78 51 chr11 77014588 77014958 -71768514 + MLT1L LTR MaLR 143 522 -93 1482 116 116 11 chr11 77014960 77015163 -71768309 - AluSg SINE Alu -6 304 63 1928 65 6 102 chr11 77015163 77015486 -71767986 - AluY SINE Alu -19 292 1 1482 116 116 11 chr11 77015486 77015557 -71767915 - AluSg SINE Alu -247 63 1 974 88 7 7 chr11 77015557 77015694 -71767778 - AluSg SINE Alu -173 137 1 2002 111 0 7 chr11 77015730 77016028 -71767444 - AluSx SINE Alu -16 296 1 303 85 0 0 chr11 77016127 77016174 -71767298 + (T)n Simple_repeat Simple_repeat 1 47 0 1470 132 0 29 chr11 77016431 77016673 -71766799 - AluSg/x SINE Alu 0 310 76 1843 94 11 31 chr11 77016682 77016969 -71766503 + AluY SINE Alu 1 281 -30 1507 102 3 116 chr11 77017071 77017364 -71766108 - AluSq SINE Alu -53 260 1 643 250 52 5 chr11 77017732 77017924 -71765548 - L2 LINE L2 -2 3311 3111 292 154 0 0 chr11 77018154 77018206 -71765266 + L1MC3 LINE L1 7535 7586 -199 1073 121 74 5 chr11 77018207 77018397 -71765075 + L1MC2 LINE L1 6131 6333 -11 26 64 0 0 chr11 77020980 77021027 -71762445 + GC_rich Low_complexity Low_complexity 1 47 0 228 67 0 0 chr11 77021029 77021059 -71762413 + (CGTG)n Simple_repeat Simple_repeat 4 33 0 245 246 16 0 chr11 77021358 77021419 -71762053 + G-rich Low_complexity Low_complexity 4 65 0 299 235 29 15 chr11 77021653 77021721 -71761751 - MIR SINE MIR -59 149 81 2520 52 0 0 chr11 77021722 77022031 -71761441 + AluSc SINE Alu 1 309 0 2138 94 0 7 chr11 77022037 77022334 -71761138 + AluSq SINE Alu 1 295 -18 1751 142 40 0 chr11 77022344 77022640 -71760832 + AluJo SINE Alu 1 308 -4 2287 134 14 12 chr11 77023733 77024097 -71759375 - MLT1A1 LTR MaLR 0 365 1 405 292 139 0 chr11 77024162 77024306 -71759166 + L2 LINE L2 3108 3271 -1 2172 112 3 0 chr11 77024686 77024990 -71758482 - AluSp SINE Alu -8 305 1 2145 104 14 0 chr11 77024994 77025291 -71758181 - AluSx SINE Alu -11 301 1 287 321 124 30 chr11 77025509 77025629 -71757843 + MLT1L LTR MaLR 262 369 -246 1783 59 0 5 chr11 77025629 77025850 -71757622 - AluY SINE Alu -91 220 1 287 321 124 30 chr11 77025850 77026028 -71757444 + MLT1L LTR MaLR 369 588 -27 237 323 55 38 chr11 77027388 77027623 -71755849 + HAL1 LINE L1 140 378 -2129 1944 97 24 7 chr11 77027664 77027952 -71755520 + AluSx SINE Alu 1 293 -19 1664 163 3 21 chr11 77028144 77028432 -71755040 - AluJo SINE Alu -29 283 1 447 346 38 64 chr11 77028483 77028876 -71754596 + L2 LINE L2 2890 3272 0 198 0 0 0 chr11 77029009 77029031 -71754441 + (A)n Simple_repeat Simple_repeat 1 22 0 248 139 0 0 chr11 77029554 77029590 -71753882 + Alu SINE Alu 1 36 -97 738 142 39 16 chr11 77029709 77029836 -71753636 + AluJo SINE Alu 3 132 -180 229 331 84 48 chr11 77030145 77030311 -71753161 + L2 LINE L2 2550 2721 -593 688 211 21 47 chr11 77030333 77030523 -71752949 + AluJo SINE Alu 118 302 -10 1463 201 0 24 chr11 77030527 77030820 -71752652 + AluJb SINE Alu 1 286 -26 2035 100 14 7 chr11 77030835 77031125 -71752347 + AluSx SINE Alu 2 293 -19 2169 85 14 0 chr11 77031151 77031445 -71752027 + AluSx SINE Alu 9 306 -6 848 221 0 0 chr11 77031445 77031608 -71751864 + AluJo/FRAM SINE Alu 134 296 -16 390 212 152 0 chr11 77031852 77031951 -71751521 - MIR SINE MIR -87 175 62 300 79 0 0 chr11 77032154 77032192 -71751280 + AluJb SINE Alu 71 108 -194 2255 84 3 0 chr11 77032737 77033045 -71750427 + AluSg SINE Alu 2 310 0 246 62 0 0 chr11 77033204 77033236 -71750236 + (A)n Simple_repeat Simple_repeat 1 32 0 1041 180 0 0 chr11 77033244 77033416 -71750056 + AluJo SINE Alu 5 176 -136 733 214 0 0 chr11 77033435 77033566 -71749906 - FLAM_C SINE Alu -2 131 1 1101 196 9 9 chr11 77033686 77033906 -71749566 + AluJo SINE Alu 1 220 -92 358 82 0 0 chr11 77033906 77033955 -71749517 + AluSq/x SINE Alu 86 134 -169 1240 47 0 0 chr11 77033957 77034107 -71749365 + L1PA4 LINE L1 6005 6154 -1 27 0 0 0 chr11 77034112 77034139 -71749333 + AT_rich Low_complexity Low_complexity 1 27 0 1255 161 22 101 chr11 77034140 77034456 -71749016 + AluJo SINE Alu 1 291 -21 302 218 195 0 chr11 77034523 77034610 -71748862 - L2 LINE L2 -19 3294 3191 532 239 80 68 chr11 77034614 77034877 -71748595 - L2 LINE L2 -789 2525 2260 1549 177 7 14 chr11 77035288 77035571 -71747901 + AluJo SINE Alu 1 281 -31 327 49 0 0 chr11 77035572 77035613 -71747859 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 24 0 0 0 chr11 77035630 77035654 -71747818 + AT_rich Low_complexity Low_complexity 1 24 0 2098 117 3 0 chr11 77035657 77035956 -71747516 + AluSp SINE Alu 1 300 -13 1775 121 0 52 chr11 77036123 77036295 -71747177 - AluSx SINE Alu -8 304 153 1965 125 0 16 chr11 77036295 77036599 -71746873 - AluSx SINE Alu -13 299 1 1775 121 0 52 chr11 77036599 77036733 -71746739 - AluSx SINE Alu -159 153 14 1151 181 12 31 chr11 77036871 77036902 -71746570 - L1MB7 LINE L1 -23 6161 6131 2172 73 14 0 chr11 77036902 77037190 -71746282 - AluY SINE Alu -19 292 1 1151 181 12 31 chr11 77037190 77037412 -71746060 - L1MB7 LINE L1 -53 6131 5913 4425 188 80 15 chr11 77037412 77038169 -71745303 + MER52A LTR ERV1 12 718 -1037 1961 116 24 7 chr11 77038169 77038462 -71745010 + AluSq SINE Alu 3 300 -13 4425 188 80 15 chr11 77038462 77039262 -71744210 + MER52A LTR ERV1 718 1755 0 224 342 0 90 chr11 77039268 77039379 -71744093 - MIR SINE MIR -151 111 11 1843 109 13 51 chr11 77039467 77039778 -71743694 - AluSx SINE Alu -13 299 1 509 318 10 41 chr11 77039804 77039999 -71743473 + L3 LINE CR1 1220 1408 -169 2080 129 0 3 chr11 77040094 77040405 -71743067 + AluSg SINE Alu 1 310 0 1239 166 19 0 chr11 77040543 77040748 -71742724 + AluJb SINE Alu 87 295 -17 425 197 148 102 chr11 77040850 77040984 -71742488 + MIR SINE MIR 16 175 -87 1152 153 5 5 chr11 77040984 77041173 -71742299 + L1PB4 LINE L1 5965 6153 -3 425 197 148 102 chr11 77041173 77041257 -71742215 + MIR SINE MIR 175 254 -8 425 260 116 70 chr11 77041328 77041510 -71741962 + MIR SINE MIR 3 200 -62 865 132 8 0 chr11 77041510 77041639 -71741833 + FLAM_C SINE Alu 1 130 -3 425 260 116 70 chr11 77041639 77041698 -71741774 + MIR SINE MIR 200 255 -7 24 0 0 0 chr11 77041706 77041730 -71741742 + AT_rich Low_complexity Low_complexity 1 24 0 2498 55 3 0 chr11 77042181 77042492 -71740980 - AluSp SINE Alu -1 312 1 421 275 189 22 chr11 77043032 77043254 -71740218 + MIR SINE MIR 4 262 0 1757 174 30 3 chr11 77043689 77044022 -71739450 - L1MB8 LINE L1 0 6178 5837 1706 176 10 13 chr11 77044071 77044377 -71739095 - AluJb SINE Alu -7 305 1 1600 124 53 37 chr11 77044387 77044508 -71738964 - L1MC3 LINE L1 0 7785 7667 2049 122 0 10 chr11 77044508 77044811 -71738661 - AluSx SINE Alu -12 300 1 1600 124 53 37 chr11 77044811 77045012 -71738460 - L1MC3 LINE L1 -118 7667 7458 330 222 16 0 chr11 77045167 77045238 -71738234 + FRAM SINE Alu 38 100 -66 2162 110 0 0 chr11 77045290 77045598 -71737874 - AluSg SINE Alu -2 308 1 192 339 189 35 chr11 77045618 77045665 -71737807 + MIR SINE MIR 1 39 -223 2064 109 18 0 chr11 77045665 77045950 -71737522 - AluSg SINE Alu -20 290 1 192 339 189 35 chr11 77045950 77046129 -71737343 + MIR SINE MIR 39 262 0 1067 251 133 81 chr11 77046544 77046671 -71736801 + L2 LINE L2 2336 2455 -858 2137 115 3 0 chr11 77046671 77046975 -71736497 - AluSx SINE Alu -7 305 1 1067 251 133 81 chr11 77046975 77047035 -71736437 + L2 LINE L2 2455 2510 -803 1701 161 45 0 chr11 77047035 77047326 -71736146 - AluJb SINE Alu -8 304 1 1067 251 133 81 chr11 77047326 77048066 -71735406 + L2 LINE L2 2510 3313 0 190 368 75 17 chr11 77048032 77048206 -71735266 - MIR SINE MIR -38 224 41 * 1955 135 16 0 chr11 77048245 77048548 -71734924 - AluSq SINE Alu -3 310 3 263 273 174 8 chr11 77048843 77048975 -71734497 - MIR SINE MIR -6 256 103 2307 82 0 3 chr11 77049013 77049319 -71734153 - AluSq SINE Alu -8 305 1 299 282 190 10 chr11 77049881 77050017 -71733455 + MIR SINE MIR 10 152 -56 2413 57 0 3 chr11 77050020 77050318 -71733154 + AluSq SINE Alu 1 297 -16 990 181 42 28 chr11 77050326 77050541 -71732931 + AluJo SINE Alu 87 304 -8 2217 89 10 0 chr11 77050611 77050913 -71732559 + AluY SINE Alu 1 305 -6 21 0 0 0 chr11 77050933 77050954 -71732518 + AT_rich Low_complexity Low_complexity 1 21 0 230 247 14 41 chr11 77051203 77051276 -71732196 - MIR SINE MIR -6 256 186 193 289 217 0 chr11 77051362 77051445 -71732027 - L2 LINE L2 0 3272 3172 2268 87 3 0 chr11 77051625 77051924 -71731548 + AluSp SINE Alu 1 300 -13 1984 82 7 11 chr11 77051943 77052222 -71731250 - L1PA7 LINE L1 0 6154 5877 1206 305 61 43 chr11 77052235 77052842 -71730630 - L2 LINE L2 -1005 2309 1692 323 35 404 0 chr11 77053106 77053163 -71730309 - MADE1 DNA Mariner 0 80 1 2158 83 7 3 chr11 77053280 77053569 -71729903 - AluY SINE Alu -21 290 1 652 283 141 44 chr11 77053680 77053938 -71729534 - L1MC/D LINE L1 -370 5751 5519 692 254 0 40 chr11 77053938 77054101 -71729371 + FAM SINE Alu 1 169 -142 282 87 0 0 chr11 77054101 77054147 -71729325 + (TA)n Simple_repeat Simple_repeat 2 47 0 2086 114 0 3 chr11 77054147 77054444 -71729028 - AluSx SINE Alu -16 296 1 652 283 141 44 chr11 77054452 77054566 -71728906 - L1MC/D LINE L1 -602 5519 5417 2102 120 0 7 chr11 77054566 77054867 -71728605 - AluSx SINE Alu -13 299 1 652 283 141 44 chr11 77054867 77054950 -71728522 - L1MC/D LINE L1 -704 5417 5263 278 130 109 0 chr11 77055144 77055190 -71728282 + AluSg/x SINE Alu 120 170 -132 3722 47 5 0 chr11 77055293 77055739 -71727733 + SVA Other Other 938 1385 -1 716 195 0 0 chr11 77056251 77056369 -71727103 + FLAM_C SINE Alu 1 118 -15 31 44 0 0 chr11 77056369 77056414 -71727058 + AT_rich Low_complexity Low_complexity 1 45 0 2196 111 0 20 chr11 77056472 77056778 -71726694 - AluSx SINE Alu -11 301 2 840 152 0 8 chr11 77056845 77056977 -71726495 + FLAM_C SINE Alu 1 131 -12 2223 93 0 0 chr11 77056994 77057328 -71726144 + AluSg SINE Alu 1 334 0 2569 57 0 0 chr11 77057332 77057632 -71725840 + AluY SINE Alu 1 300 -11 1477 203 24 20 chr11 77057683 77057979 -71725493 + AluJo SINE Alu 1 297 -15 2286 93 7 3 chr11 77057989 77058280 -71725192 + AluSx SINE Alu 5 296 -16 1989 120 10 10 chr11 77058284 77058603 -71724869 + AluSx SINE Alu 1 312 0 2129 129 7 0 chr11 77058706 77059000 -71724472 + AluSp SINE Alu 1 296 -17 607 289 95 28 chr11 77059069 77059322 -71724150 - AluJo SINE Alu -14 298 29 1591 179 0 7 chr11 77059325 77059599 -71723873 - AluJo SINE Alu -40 272 1 2511 36 4 0 chr11 77059610 77059933 -71723539 - AluY SINE Alu 0 324 1 239 168 40 109 chr11 77059941 77060042 -71723430 - L1 LINE L1 -1318 4828 4735 2277 96 7 0 chr11 77060044 77060337 -71723135 - AluSp SINE Alu -18 295 1 2180 119 0 19 chr11 77060388 77060706 -71722766 - AluSx SINE Alu 0 312 1 1028 239 79 22 chr11 77060807 77061212 -71722260 - L1ME LINE L1 -341 5780 5353 1762 154 6 38 chr11 77061365 77061684 -71721788 - AluJo SINE Alu -1 311 3 242 286 0 0 chr11 77063160 77063216 -71720256 + L2 LINE L2 3225 3280 -33 459 171 0 0 chr11 77063241 77063317 -71720155 + AluJb SINE Alu 85 160 -152 853 187 18 6 chr11 77063321 77063487 -71719985 + AluJb SINE Alu 131 298 -14 196 329 24 0 chr11 77063531 77063613 -71719859 - L2 LINE L2 -587 2727 2644 189 305 226 18 chr11 77063643 77063807 -71719665 + L2 LINE L2 2643 2840 -474 2258 103 3 0 chr11 77063807 77064098 -71719374 - AluSx SINE Alu -20 292 1 212 361 12 12 chr11 77064211 77064294 -71719178 - MIR3 SINE MIR -44 164 82 2218 124 3 10 chr11 77064713 77065027 -71718445 + AluJb SINE Alu 1 312 0 181 167 28 0 chr11 77065191 77065227 -71718245 - L2 LINE L2 -17 3255 3219 2030 122 7 0 chr11 77065326 77065631 -71717841 - AluSx SINE Alu 0 307 1 515 284 11 28 chr11 77065635 77065811 -71717661 + L2 LINE L2 2837 3009 -263 313 266 91 84 chr11 77065975 77066112 -71717360 + L2 LINE L2 3008 3143 -170 1729 165 14 14 chr11 77066112 77066403 -71717069 - AluJo SINE Alu -21 291 1 313 266 91 84 chr11 77066403 77066551 -71716921 + L2 LINE L2 3143 3295 -18 429 335 74 29 chr11 77066663 77066900 -71716572 + L2 LINE L2 2990 3237 -35 296 212 15 0 chr11 77066900 77066966 -71716506 + MER91 DNA MER1_type 1 67 -73 3514 132 0 31 chr11 77067810 77068354 -71715118 + MER1A DNA MER1_type 1 527 0 201 154 51 0 chr11 77068483 77068522 -71714950 + (CATATA)n Simple_repeat Simple_repeat 1 41 0 234 317 70 28 chr11 77068538 77068680 -71714792 - MIR SINE MIR -110 152 5 906 143 106 31 chr11 77068763 77068924 -71714548 - FAM SINE Alu -5 44 1 2252 110 0 0 chr11 77068972 77069263 -71714209 - AluSg SINE Alu -19 291 1 2114 115 14 0 chr11 77069416 77069711 -71713761 + AluSg SINE Alu 1 299 -11 23 24 0 24 chr11 77070380 77070391 -71713081 + AT_rich Low_complexity Low_complexity 1 11 -29 351 0 0 0 chr11 77070391 77070430 -71713042 + (TG)n Simple_repeat Simple_repeat 2 40 0 23 24 0 24 chr11 77070430 77070459 -71713013 + AT_rich Low_complexity Low_complexity 11 40 0 1224 163 61 82 chr11 77070467 77070761 -71712711 + AluJo SINE Alu 1 288 -24 1739 157 20 29 chr11 77071122 77071428 -71712044 - AluJo SINE Alu -9 303 1 1797 154 0 4 chr11 77071583 77071862 -71711610 - AluSx SINE Alu -7 305 28 2490 85 3 0 chr11 77071879 77072185 -71711287 - AluSp SINE Alu -6 307 1 2071 131 7 3 chr11 77072212 77072502 -71710970 + AluSx SINE Alu 1 291 -21 245 200 0 0 chr11 77072929 77072974 -71710498 - LTR33 LTR ERVL 0 521 477 312 281 9 58 chr11 77072984 77073121 -71710351 + MIR SINE MIR 12 143 -65 181 200 0 0 chr11 77073260 77073295 -71710177 - L2 LINE L2 -16 3297 3263 1858 171 7 3 chr11 77073334 77073633 -71709839 - AluJb SINE Alu -11 301 2 289 311 131 0 chr11 77074195 77074378 -71709094 + L2 LINE L2 2812 3018 -254 1650 158 16 32 chr11 77074461 77074777 -71708695 - AluJo SINE Alu -1 311 1 1859 171 13 3 chr11 77074865 77075170 -71708302 - AluSx SINE Alu -4 308 1 266 314 98 0 chr11 77075203 77075305 -71708167 + L2 LINE L2 3151 3262 -10 2069 121 47 0 chr11 77075950 77076248 -71707224 - AluSx SINE Alu 0 312 1 253 252 104 26 chr11 77076487 77076602 -71706870 + L2 LINE L2 2897 3020 -252 2450 93 3 0 chr11 77076767 77077079 -71706393 + AluSq SINE Alu 1 313 0 1032 98 0 182 chr11 77077562 77077798 -71705674 - 7SK RNA RNA 0 193 1 223 344 0 0 chr11 77077956 77078020 -71705452 - L2 LINE L2 -23 3249 3186 189 250 21 0 chr11 77078240 77078288 -71705184 - L2 LINE L2 -10 3262 3214 1064 186 0 10 chr11 77078771 77078964 -71704508 - AluJb SINE Alu -2 310 120 1782 166 36 0 chr11 77078979 77079257 -71704215 - AluJb SINE Alu -24 288 1 551 266 14 7 chr11 77079357 77079565 -71703907 - MLT1J LTR MaLR -18 493 234 229 211 0 0 chr11 77079580 77079632 -71703840 + T-rich Low_complexity Low_complexity 1 52 0 2537 72 0 3 chr11 77079637 77079944 -71703528 - AluSx SINE Alu -6 306 1 2023 155 0 3 chr11 77079946 77080242 -71703230 - AluJo SINE Alu -17 295 1 2391 88 0 0 chr11 77080250 77080547 -71702925 - AluSc SINE Alu -8 301 5 1997 144 3 0 chr11 77080728 77081013 -71702459 + AluSx SINE Alu 1 286 -26 1066 158 16 11 chr11 77081035 77081225 -71702247 - AluSg/x SINE Alu -2 310 120 1014 133 0 0 chr11 77081225 77081376 -71702096 - AluSg/x SINE Alu -8 302 152 1603 102 0 18 chr11 77081380 77081605 -71701867 - AluSq SINE Alu -88 225 5 270 259 86 60 chr11 77081911 77082027 -71701445 - MIR SINE MIR -69 139 20 466 258 0 53 chr11 77082426 77082577 -71700895 + MIR3 SINE MIR 66 208 0 302 221 15 0 chr11 77082612 77082680 -71700792 + MIR SINE MIR 85 153 -109 2088 98 0 21 chr11 77082955 77083262 -71700210 - AluSg SINE Alu 0 301 1 393 303 31 25 chr11 77083918 77084080 -71699392 + MIR3 SINE MIR 32 194 -14 256 287 35 26 chr11 77084148 77084263 -71699209 - MIR SINE MIR 0 262 147 1016 267 79 12 chr11 77084508 77084913 -71698559 + L1ME3A LINE L1 4734 5165 -981 1776 178 3 7 chr11 77084926 77085224 -71698248 + AluJo SINE Alu 1 297 -15 23 0 0 0 chr11 77085260 77085283 -71698189 + AT_rich Low_complexity Low_complexity 1 23 0 1814 175 0 4 chr11 77085321 77085601 -71697871 + AluJb SINE Alu 1 279 -33 2370 99 0 0 chr11 77085606 77085910 -71697562 - AluSx SINE Alu -8 304 1 200 33 0 33 chr11 77085926 77085956 -71697516 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 3276 226 64 27 chr11 77085960 77086883 -71696589 + L1ME3A LINE L1 5204 6166 -4 1928 172 0 0 chr11 77087058 77087361 -71696111 - AluJb SINE Alu -9 303 1 301 291 34 45 chr11 77087428 77087578 -71695894 - L1MC4a LINE L1 -1833 5975 5825 2274 89 0 0 chr11 77087578 77087881 -71695591 - AluSg SINE Alu 0 303 1 301 291 34 45 chr11 77087881 77087908 -71695564 - L1MC4a LINE L1 -1983 5825 5799 1532 191 20 24 chr11 77087929 77088223 -71695249 - AluJb SINE Alu -19 293 1 2333 93 3 3 chr11 77088332 77088634 -71694838 - AluSg SINE Alu -8 302 1 10565 109 17 1 chr11 77088634 77091031 -71692441 - HERVK14 LTR ERVK -2579 3366 882 269 353 66 22 chr11 77091219 77091355 -71692117 + L2 LINE L2 3129 3270 -2 1646 139 37 44 chr11 77091838 77091956 -71691516 + AluJo SINE Alu 1 118 -194 2494 77 0 0 chr11 77091956 77092254 -71691218 - AluY SINE Alu -13 298 1 1646 139 37 44 chr11 77092254 77092429 -71691043 + AluJo SINE Alu 118 292 -20 325 325 45 32 chr11 77092576 77092730 -71690742 + L3 LINE CR1 1331 1486 -91 266 268 0 0 chr11 77092776 77092832 -71690640 + MER58 DNA MER1_type 1 56 -330 1310 81 0 0 chr11 77092880 77093040 -71690432 - AluSg/x SINE Alu -16 296 137 2407 87 0 0 chr11 77093040 77093340 -71690132 - AluSq SINE Alu -13 300 1 481 148 0 45 chr11 77093340 77093428 -71690044 - L1MB5 LINE L1 -36 6138 6055 423 228 0 0 chr11 77093439 77093518 -71689954 + MER58 DNA MER1_type 186 264 -77 324 318 78 42 chr11 77093646 77093838 -71689634 - MIR3 SINE MIR -3 205 7 187 259 0 19 chr11 77094267 77094321 -71689151 + MIR SINE MIR 98 150 -112 1202 172 44 93 chr11 77094433 77094616 -71688856 - L1ME2 LINE L1 0 6164 6006 2078 77 0 103 chr11 77094616 77094928 -71688544 - AluSg SINE Alu -30 280 1 1202 172 44 93 chr11 77094928 77095110 -71688362 - L1ME2 LINE L1 -158 6006 5817 227 254 136 0 chr11 77095211 77095270 -71688202 + MIR SINE MIR 30 96 -112 * 350 272 48 0 chr11 77095262 77095365 -71688107 - MIR3 SINE MIR -36 172 65 2469 74 14 0 chr11 77095448 77095745 -71687727 - AluSq SINE Alu -12 301 1 484 179 57 148 chr11 77097127 77097356 -71686116 - MIR SINE MIR -2 260 53 190 260 40 0 chr11 77097359 77097409 -71686063 + MIR SINE MIR 3 54 -208 278 226 36 24 chr11 77097770 77097854 -71685618 - L1ME2 LINE L1 -2046 5762 5678 909 137 15 0 chr11 77097872 77098003 -71685469 + FLAM_C SINE Alu 1 133 -10 2036 113 28 17 chr11 77098076 77098367 -71685105 - AluSx SINE Alu -15 297 4 1549 139 12 24 chr11 77098495 77098747 -71684725 - AluSx SINE Alu -20 292 44 2287 105 0 3 chr11 77099063 77099358 -71684114 + AluSx SINE Alu 3 296 -16 354 263 83 19 chr11 77099418 77099574 -71683898 - Charlie8 DNA MER1_type -2160 257 92 882 167 56 12 chr11 77099667 77099829 -71683643 + AluJb SINE Alu 132 300 -12 22 0 0 0 chr11 77099947 77099969 -71683503 + AT_rich Low_complexity Low_complexity 1 22 0 243 250 113 24 chr11 77100659 77100700 -71682772 + L2 LINE L2 3136 3172 -100 1414 143 101 39 chr11 77100700 77100986 -71682486 - AluJb SINE Alu -8 304 1 243 250 113 24 chr11 77100986 77101068 -71682404 + L2 LINE L2 3172 3270 -2 1698 171 7 40 chr11 77101199 77101332 -71682140 + AluJo SINE Alu 1 137 -175 2194 114 7 7 chr11 77101332 77101640 -71681832 + AluSp SINE Alu 1 308 -5 1698 171 7 40 chr11 77101640 77101805 -71681667 + AluJo SINE Alu 137 289 -23 2081 133 0 3 chr11 77101872 77102174 -71681298 + AluSg SINE Alu 1 301 -9 715 293 79 35 chr11 77102488 77102806 -71680666 - L2 LINE L2 -2 3270 2939 243 261 0 45 chr11 77102911 77102999 -71680473 - L2 LINE L2 -500 2814 2731 217 294 109 33 chr11 77103044 77103136 -71680336 + MIR SINE MIR 19 117 -91 912 148 35 12 chr11 77103150 77103319 -71680153 + AluJb SINE Alu 136 308 -4 2258 108 3 0 chr11 77104767 77105062 -71678410 + AluSx SINE Alu 1 296 -16 181 267 27 40 chr11 77105095 77105170 -71678302 - L2 LINE L2 -4 3309 3236 203 260 83 0 chr11 77105564 77105660 -71677812 + MIR SINE MIR 146 249 -13 225 343 60 57 chr11 77106284 77106532 -71676940 + L2 LINE L2 2222 2470 -844 1941 146 0 27 chr11 77106747 77107048 -71676424 + AluJb SINE Alu 1 293 -19 1118 195 77 8 chr11 77107121 77107367 -71676105 + AluJo SINE Alu 1 263 -49 269 217 0 29 chr11 77107371 77107440 -71676032 + AluJ/FRAM SINE Alu 228 294 -8 204 200 0 0 chr11 77107451 77107496 -71675976 + (CATATA)n Simple_repeat Simple_repeat 2 46 0 471 117 0 39 chr11 77107585 77107662 -71675810 + AluJ/FRAM SINE Alu 226 299 -13 1434 98 0 20 chr11 77107676 77107879 -71675593 + AluY SINE Alu 112 310 -1 2160 116 0 3 chr11 77107879 77108190 -71675282 + AluSq SINE Alu 1 313 0 2012 132 3 7 chr11 77108462 77108750 -71674722 - AluSx SINE Alu -25 287 1 225 0 0 0 chr11 77108802 77108827 -71674645 + (TTG)n Simple_repeat Simple_repeat 2 26 0 2076 96 7 11 chr11 77108860 77109039 -71674433 - AluY SINE Alu 0 311 132 2277 98 3 23 chr11 77109039 77109345 -71674127 - AluSp SINE Alu -12 301 2 2076 96 7 11 chr11 77109345 77109474 -71673998 - AluY SINE Alu -179 132 4 1498 170 20 20 chr11 77109567 77109779 -71673693 - AluSq SINE Alu 0 313 102 2331 80 0 3 chr11 77109779 77110068 -71673404 - AluY SINE Alu -23 288 1 1465 160 0 4 chr11 77110070 77110295 -71673177 - AluJo SINE Alu -17 295 72 1498 170 20 20 chr11 77110295 77110414 -71673058 - AluSq SINE Alu -211 102 11 1599 157 69 19 chr11 77110510 77110679 -71672793 - L1MB7 LINE L1 -137 6047 5888 1891 125 14 24 chr11 77110679 77110966 -71672506 - AluSx SINE Alu -8 304 21 1599 157 69 19 chr11 77110966 77111115 -71672357 - L1MB7 LINE L1 -296 5888 5713 198 337 31 20 chr11 77111211 77111309 -71672163 - L2 LINE L2 -2088 1226 1128 1685 134 41 35 chr11 77111384 77111674 -71671798 + AluJo SINE Alu 1 292 -20 2682 24 0 0 chr11 77112017 77112309 -71671163 - AluYa5 SINE Alu -3 308 17 2221 116 0 0 chr11 77112311 77112603 -71670869 - AluSg SINE Alu -18 292 1 2175 115 3 3 chr11 77112876 77113171 -71670301 + AluSq SINE Alu 1 295 -18 1945 132 10 7 chr11 77113228 77113524 -71669948 + AluSx SINE Alu 1 297 -15 1127 223 130 14 chr11 77114129 77114421 -71669051 - L1ME1 LINE L1 -9 6157 5832 1754 130 50 86 chr11 77114423 77114570 -71668902 - L1MB3 LINE L1 0 6183 6032 1996 126 10 10 chr11 77114570 77114863 -71668609 + AluJo SINE Alu 1 293 -19 2322 121 0 0 chr11 77114865 77115172 -71668300 + AluSx SINE Alu 1 307 -5 1754 130 50 86 chr11 77115172 77115389 -71668083 - L1MB3 LINE L1 -152 6031 5828 1948 109 3 118 chr11 77115389 77115736 -71667736 - AluSx SINE Alu -1 311 5 1754 130 50 86 chr11 77115736 77115751 -71667721 - L1MB3 LINE L1 -355 5828 5814 815 184 33 0 chr11 77115806 77115958 -71667514 - AluJ SINE Alu -34 278 122 375 155 0 0 chr11 77115981 77116039 -71667433 - AluJ SINE Alu -157 145 88 550 125 83 0 chr11 77116039 77116135 -71667337 - AluSg/x SINE Alu -1 308 205 1756 215 25 3 chr11 77116157 77116524 -71666948 - L1MB3 LINE L1 -538 5628 5254 2471 64 0 14 chr11 77116528 77116825 -71666647 - AluY SINE Alu -18 293 1 981 147 0 0 chr11 77116825 77116961 -71666511 - AluSq/x SINE Alu -176 136 1 2985 169 77 35 chr11 77116967 77117705 -71665767 - L1MB3 LINE L1 -893 5253 4485 2017 125 3 16 chr11 77117901 77118204 -71665268 - AluSx SINE Alu -13 299 1 2138 126 0 7 chr11 77118206 77118515 -71664957 - AluSx SINE Alu -1 311 5 1552 194 72 24 chr11 77118517 77118893 -71664579 - L1ME1 LINE L1 -189 5977 5584 1877 159 0 10 chr11 77118902 77119203 -71664269 + AluJb SINE Alu 5 302 -10 26 30 0 0 chr11 77119304 77119337 -71664135 + AT_rich Low_complexity Low_complexity 1 33 0 2524 61 0 0 chr11 77119762 77120058 -71663414 - AluY SINE Alu -15 296 1 264 224 200 9 chr11 77120324 77120430 -71663042 - MIR SINE MIR -63 145 39 232 338 115 20 chr11 77120674 77120822 -71662650 + L2 LINE L2 3109 3270 -2 194 262 0 83 chr11 77120897 77120981 -71662491 - L2 LINE L2 -4 3268 3192 225 0 0 0 chr11 77121001 77121026 -71662446 + (CA)n Simple_repeat Simple_repeat 2 26 0 238 288 14 14 chr11 77121290 77121363 -71662109 - MER5C DNA MER1_type -248 76 4 7117 89 26 25 chr11 77121386 77122479 -71660993 + L1MA3 LINE L1 5206 6303 -2 630 304 77 0 chr11 77122489 77122696 -71660776 + MIR SINE MIR 20 242 -20 2562 49 7 3 chr11 77122762 77123069 -71660403 - AluY SINE Alu -3 308 1 2114 114 7 10 chr11 77123367 77123666 -71659806 - AluSx SINE Alu -14 298 1 710 268 32 5 chr11 77123958 77124148 -71659324 + MIR SINE MIR 34 228 -34 255 61 0 0 chr11 77124160 77124193 -71659279 + (TTA)n Simple_repeat Simple_repeat 3 35 0 443 300 144 11 chr11 77124270 77124533 -71658939 + L2 LINE L2 2660 2957 -357 2337 89 0 0 chr11 77124571 77124862 -71658610 - AluSg SINE Alu -19 291 1 21 0 0 0 chr11 77124864 77124885 -71658587 + AT_rich Low_complexity Low_complexity 1 21 0 383 293 7 21 chr11 77125028 77125168 -71658304 + L2 LINE L2 3176 3313 0 255 179 51 39 chr11 77125911 77125989 -71657483 - L1ME4a LINE L1 -7 6114 6036 2257 105 0 3 chr11 77126214 77126508 -71656964 - AluSx SINE Alu -19 293 1 831 149 0 22 chr11 77126522 77126656 -71656816 - FLAM_C SINE Alu -2 131 1 2349 91 7 0 chr11 77126664 77126961 -71656511 - AluSx SINE Alu -5 307 9 276 217 0 0 chr11 77126977 77127037 -71656435 + L2 LINE L2 3213 3272 0 405 282 67 0 chr11 77127385 77127534 -71655938 - MIR SINE MIR -57 205 47 592 79 0 0 chr11 77127574 77127650 -71655822 - Alu SINE Alu -232 77 2 322 296 20 0 chr11 77127899 77127997 -71655475 - MIR SINE MIR -68 140 41 703 232 116 0 chr11 77128061 77128242 -71655230 + MER20 DNA MER1_type 18 219 0 1939 167 3 0 chr11 77128346 77128657 -71654815 - AluJo SINE Alu 0 312 1 378 323 67 28 chr11 77129121 77129403 -71654069 + L2 LINE L2 2035 2327 -987 210 234 43 0 chr11 77129596 77129643 -71653829 + L2 LINE L2 2707 2755 -559 1939 165 53 8 chr11 77129775 77130169 -71653303 - L1MB8 LINE L1 -5 6173 5762 21 0 0 0 chr11 77130276 77130297 -71653175 + AT_rich Low_complexity Low_complexity 1 21 0 190 0 67 0 chr11 77130430 77130460 -71653012 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2185 103 3 0 chr11 77130463 77130745 -71652727 - AluSp SINE Alu -30 283 1 190 331 35 70 chr11 77130797 77130969 -71652503 + L2 LINE L2 2942 3107 -165 2093 117 3 16 chr11 77131084 77131216 -71652256 + AluSx SINE Alu 3 135 -177 2473 84 3 0 chr11 77131216 77131525 -71651947 + AluSp SINE Alu 1 310 -3 2093 117 3 16 chr11 77131525 77131700 -71651772 + AluSx SINE Alu 135 306 -6 1658 159 11 22 chr11 77131713 77131990 -71651482 + AluJo SINE Alu 5 278 -34 269 353 66 22 chr11 77133131 77133267 -71650205 + L2 LINE L2 3129 3270 -2 1646 139 37 44 chr11 77133750 77133868 -71649604 + AluJo SINE Alu 1 118 -194 2494 77 0 0 chr11 77133868 77134166 -71649306 - AluY SINE Alu -13 298 1 1646 139 37 44 chr11 77134166 77134341 -71649131 + AluJo SINE Alu 118 292 -20 325 325 45 32 chr11 77134488 77134642 -71648830 + L3 LINE CR1 1331 1486 -91 266 268 0 0 chr11 77134688 77134744 -71648728 + MER58 DNA MER1_type 1 56 -168 2395 78 0 3 chr11 77134792 77135088 -71648384 - AluY SINE Alu -16 295 1 215 127 0 0 chr11 77135851 77135888 -71647584 - MIR SINE MIR -113 149 114 411 26 78 0 chr11 77136290 77136367 -71647105 + CT-rich Low_complexity Low_complexity 2 84 0 1105 127 6 23 chr11 77136371 77136544 -71646928 - AluSq SINE Alu -39 274 105 2368 94 7 0 chr11 77136818 77137126 -71646346 - AluSx SINE Alu 0 312 3 462 242 81 16 chr11 77138173 77138297 -71645175 + MER94 DNA DNA 3 134 0 2322 181 35 10 chr11 77138323 77138814 -71644658 - L1MB4 LINE L1 0 6180 5678 351 147 40 0 chr11 77138831 77138906 -71644566 - L1MB4 LINE L1 -691 5473 5396 2198 97 0 14 chr11 77138911 77139039 -71644433 + AluSc SINE Alu 6 134 -175 2205 97 0 13 chr11 77139039 77139337 -71644135 + AluSc SINE Alu 3 296 -13 2198 97 0 14 chr11 77139337 77139497 -71643975 + AluSc SINE Alu 134 290 -19 245 246 16 0 chr11 77139629 77139690 -71643782 + G-rich Low_complexity Low_complexity 4 65 0 283 222 0 0 chr11 77139924 77139978 -71643494 - MIR SINE MIR -59 149 96 2356 83 0 7 chr11 77139993 77140294 -71643178 + AluSc SINE Alu 1 299 -10 2461 81 7 0 chr11 77140826 77141135 -71642337 + AluY SINE Alu 1 311 0 3266 93 5 2 chr11 77141182 77141613 -71641859 + MSTB1 LTR MaLR 1 432 0 1533 147 21 36 chr11 77142108 77142184 -71641288 - Charlie5 DNA MER1_type -20 2604 2528 2277 106 0 0 chr11 77142184 77142476 -71640996 - AluSg SINE Alu -14 296 5 1533 147 21 36 chr11 77142476 77142733 -71640739 - Charlie5 DNA MER1_type -96 2528 2276 457 224 81 8 chr11 77143178 77143336 -71640136 + MIR SINE MIR 34 203 -59 265 250 141 51 chr11 77143382 77143520 -71639952 - MIR SINE MIR -65 143 32 1839 154 48 0 chr11 77145926 77146219 -71637253 + AluJo SINE Alu 1 307 -5 2278 115 3 10 chr11 77146473 77146787 -71636685 + AluJb SINE Alu 1 312 0 231 200 57 14 chr11 77146950 77147020 -71636452 - MIR SINE MIR -11 251 179 2309 71 4 7 chr11 77147084 77147391 -71636081 - AluY SINE Alu 0 306 1 443 281 104 18 chr11 77147391 77147669 -71635803 - L1ME4a LINE L1 -227 5894 5593 29 28 0 0 chr11 77147786 77147822 -71635650 + AT_rich Low_complexity Low_complexity 1 36 0 2460 93 0 0 chr11 77147885 77148196 -71635276 + AluSq SINE Alu 1 311 -2 1096 186 0 0 chr11 77148211 77148383 -71635089 + AluJo SINE Alu 5 176 -136 727 214 0 0 chr11 77148402 77148533 -71634939 - FLAM_C SINE Alu -2 131 1 1211 191 9 9 chr11 77148653 77148873 -71634599 + AluJo SINE Alu 1 220 -92 362 82 0 0 chr11 77148873 77148922 -71634550 + AluSq/x SINE Alu 86 134 -168 1162 56 0 0 chr11 77148924 77149066 -71634406 + L1PA4 LINE L1 6005 6146 -9 27 0 0 0 chr11 77149079 77149106 -71634366 + AT_rich Low_complexity Low_complexity 1 27 0 1361 161 22 101 chr11 77149107 77149423 -71634049 + AluJo SINE Alu 1 291 -21 267 218 195 0 chr11 77149490 77149577 -71633895 - L2 LINE L2 -19 3294 3191 414 214 79 45 chr11 77149595 77149773 -71633699 - L2 LINE L2 -802 2512 2329 1712 183 7 13 chr11 77150255 77150556 -71632916 + AluJo SINE Alu 1 299 -13 216 204 0 0 chr11 77150683 77150727 -71632745 + T-rich Low_complexity Low_complexity 1 44 0 7062 52 9 38 chr11 77150727 77151701 -71631771 - SVA Other Other 0 1386 441 5388 69 36 94 chr11 77151726 77152623 -71630849 - SVA Other Other -520 866 22 22 0 0 0 chr11 77152777 77152799 -71630673 + GC_rich Low_complexity Low_complexity 1 22 0 2452 83 0 0 chr11 77152799 77153101 -71630371 - AluSq SINE Alu -11 302 1 481 148 0 45 chr11 77153101 77153189 -71630283 - L1MB5 LINE L1 -36 6138 6055 423 228 0 0 chr11 77153200 77153279 -71630193 + MER58 DNA MER1_type 186 264 -2156 324 318 78 42 chr11 77153407 77153599 -71629873 - MIR3 SINE MIR -3 205 7 187 259 0 19 chr11 77154028 77154082 -71629390 + MIR SINE MIR 98 150 -112 1202 172 44 93 chr11 77154194 77154377 -71629095 - L1ME2 LINE L1 0 6164 6006 2078 77 0 103 chr11 77154377 77154689 -71628783 - AluSg SINE Alu -30 280 1 1202 172 44 93 chr11 77154689 77154871 -71628601 - L1ME2 LINE L1 -158 6006 5817 227 254 136 0 chr11 77154972 77155031 -71628441 + MIR SINE MIR 30 96 -112 * 385 269 39 0 chr11 77155023 77155127 -71628345 - MIR3 SINE MIR -36 172 65 1947 141 7 0 chr11 77155210 77155508 -71627964 - AluSq SINE Alu -13 300 1 1736 151 0 63 chr11 77155575 77155720 -71627752 + AluJb SINE Alu 1 117 -195 2397 84 0 3 chr11 77155720 77156016 -71627456 + AluSg SINE Alu 1 295 -15 1736 151 0 63 chr11 77156016 77156189 -71627283 + AluJb SINE Alu 117 299 -13 3855 90 22 67 chr11 77156284 77156916 -71626556 - LTR14B LTR ERVK 0 608 5 18886 181 30 12 chr11 77156925 77160662 -71622810 - HERVK14C LTR ERVK -40 7377 3708 2673 59 0 0 chr11 77160662 77160969 -71622503 - AluY SINE Alu -4 307 1 18886 181 30 12 chr11 77160969 77164244 -71619228 - HERVK14C LTR ERVK -3709 3708 1 3558 117 10 58 chr11 77164244 77164867 -71618605 - LTR14B LTR ERVK 0 608 16 695 254 133 32 chr11 77164879 77165303 -71618169 + L1ME LINE L1 4795 5175 -995 2436 92 3 0 chr11 77165303 77165608 -71617864 - AluSp SINE Alu -7 306 1 695 254 133 32 chr11 77165608 77165810 -71617662 + L1ME LINE L1 5175 5355 -815 1935 164 0 17 chr11 77165810 77166109 -71617363 + AluJb SINE Alu 1 294 -18 695 254 133 32 chr11 77166109 77166194 -71617278 + L1ME LINE L1 5355 5585 -585 238 309 114 21 chr11 77166608 77166844 -71616628 - L2 LINE L2 -337 2977 2720 249 231 64 0 chr11 77167032 77167110 -71616362 + MLT1F1 LTR MaLR 51 133 -434 2358 98 7 3 chr11 77167123 77167429 -71616043 + AluSx SINE Alu 6 312 0 1112 158 11 0 chr11 77167429 77167619 -71615853 + L1MC3 LINE L1 7383 7574 -211 858 123 70 53 chr11 77167620 77167743 -71615729 + L1MC2 LINE L1 6114 6246 -98 1849 124 53 4 chr11 77167743 77168035 -71615437 + AluJb SINE Alu 9 313 0 858 123 70 53 chr11 77168035 77168136 -71615336 + L1MC2 LINE L1 6246 6344 0 205 342 38 0 chr11 77168821 77168900 -71614572 - L2 LINE L2 -534 2780 2699 2315 104 3 0 chr11 77169037 77169336 -71614136 - AluSp SINE Alu -13 300 1 203 229 62 21 chr11 77169568 77169664 -71613808 - L2 LINE L2 -665 2649 2550 317 222 86 0 chr11 77169746 77169827 -71613645 - MIR SINE MIR -32 230 143 483 297 22 12 chr11 77170085 77170283 -71613189 + MIR SINE MIR 8 203 -59 1987 145 3 7 chr11 77170332 77170628 -71612844 + AluJo SINE Alu 1 295 -17 628 61 0 0 chr11 77170635 77170717 -71612755 + AluY SINE Alu 2 83 -228 3726 34 43 0 chr11 77170717 77171184 -71612288 - LTR2B LTR ERV1 0 490 4 1618 41 66 5 chr11 77171184 77171433 -71612039 + AluY SINE Alu 77 337 0 2348 109 0 3 chr11 77171433 77171736 -71611736 + AluSx SINE Alu 1 302 -10 2359 60 3 3 chr11 77171739 77172064 -71611408 + AluY SINE Alu 1 325 0 2189 125 16 0 chr11 77172064 77172368 -71611104 + AluSq SINE Alu 1 309 -4 480 115 0 42 chr11 77172698 77172794 -71610678 - AluSg/x SINE Alu -12 297 206 180 0 0 0 chr11 77172900 77172920 -71610552 + (A)n Simple_repeat Simple_repeat 1 20 0 215 257 29 48 chr11 77172945 77173050 -71610422 - L2 LINE L2 -989 2325 2223 258 279 72 12 chr11 77173172 77173446 -71610026 + LTR33 LTR ERVL 1 318 -203 653 294 153 27 chr11 77173879 77174291 -71609181 - LTR16B LTR ERVL 0 464 1 2135 136 0 16 chr11 77175822 77176164 -71607308 - AluSx SINE Alu 0 337 1 2214 114 0 13 chr11 77176262 77176578 -71606894 - AluSx SINE Alu 0 312 1 1128 64 0 36 chr11 77176578 77176718 -71606754 - AluSq/x SINE Alu -178 135 1 302 169 23 208 chr11 77176875 77177005 -71606467 - L1MC4a LINE L1 -1922 5886 5781 1868 172 23 0 chr11 77177101 77177404 -71606068 + AluJo SINE Alu 1 310 -2 25 23 0 23 chr11 77177888 77177910 -71605562 + AT_rich Low_complexity Low_complexity 1 23 -19 2008 112 0 11 chr11 77177910 77178188 -71605284 - AluSx SINE Alu -37 275 1 25 23 0 23 chr11 77178188 77178208 -71605264 + AT_rich Low_complexity Low_complexity 23 42 0 407 270 6 0 chr11 77178418 77178592 -71604880 + (TGGA)n Simple_repeat Simple_repeat 1 175 0 315 295 73 18 chr11 77178939 77179123 -71604349 + MIR SINE MIR 11 206 -56 2120 118 0 58 chr11 77179139 77179469 -71604003 + AluSp SINE Alu 1 311 -2 414 307 5 14 chr11 77179981 77180173 -71603299 + MIR SINE MIR 2 259 -3 432 0 0 0 chr11 77180860 77180908 -71602564 + (TG)n Simple_repeat Simple_repeat 1 48 0 275 333 21 0 chr11 77181267 77181360 -71602112 - L3 LINE CR1 -2 1575 1481 280 305 23 31 chr11 77182569 77182697 -71600775 - MIR SINE MIR -62 146 20 1945 121 10 40 chr11 77182749 77182938 -71600534 - AluSx SINE Alu 0 324 147 2555 81 0 0 chr11 77182938 77183245 -71600227 - AluSx SINE Alu -5 307 1 1945 121 10 40 chr11 77183245 77183388 -71600084 - AluSx SINE Alu -177 147 1 39 38 0 0 chr11 77183388 77183441 -71600031 + AT_rich Low_complexity Low_complexity 1 53 0 2012 171 0 0 chr11 77183555 77183865 -71599607 + AluJo SINE Alu 1 310 -2 335 312 18 0 chr11 77184298 77184407 -71599065 - MIR3 SINE MIR -25 183 73 452 319 112 0 chr11 77185479 77185648 -71597824 + MER91A DNA MER1_type 1 188 -8 1995 113 55 0 chr11 77186715 77186990 -71596482 + AluSq SINE Alu 1 290 -23 2440 93 0 0 chr11 77186997 77187298 -71596174 + AluSx SINE Alu 1 301 -11 280 250 191 0 chr11 77187444 77187594 -71595878 + MIR SINE MIR 33 214 -48 2319 102 3 0 chr11 77187955 77188250 -71595222 + AluSg SINE Alu 1 296 -14 475 213 33 33 chr11 77188320 77188442 -71595030 + MIR SINE MIR 8 129 -133 235 277 85 54 chr11 77189475 77189605 -71593867 + MIR3 SINE MIR 42 175 -33 2181 120 17 7 chr11 77189836 77190135 -71593337 + AluSx SINE Alu 1 302 -10 205 140 0 40 chr11 77190981 77191031 -71592441 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 1896 131 14 20 chr11 77191865 77192162 -71591310 + AluJb SINE Alu 1 295 -17 1843 118 65 0 chr11 77192169 77192465 -71591007 + AluSx SINE Alu 5 317 0 232 235 129 12 chr11 77193358 77193443 -71590029 - MIR SINE MIR -71 191 97 342 233 58 25 chr11 77193448 77193568 -71589904 + MIR SINE MIR 30 153 -55 219 266 37 73 chr11 77193655 77193764 -71589708 + MIR SINE MIR 81 185 -77 2314 120 3 0 chr11 77195347 77195656 -71587816 + AluSx SINE Alu 1 310 -2 1651 125 62 44 chr11 77195656 77195928 -71587544 + AluJo SINE Alu 30 306 -6 220 227 160 0 chr11 77196674 77196749 -71586723 - MIR SINE MIR -62 200 114 347 294 28 9 chr11 77197245 77197354 -71586118 + MIR SINE MIR 36 146 -62 227 284 14 0 chr11 77198305 77198379 -71585093 + GA-rich Low_complexity Low_complexity 1 75 0 1978 124 40 0 chr11 77198387 77198686 -71584786 + AluSx SINE Alu 1 311 -1 30 45 0 0 chr11 77198961 77199005 -71584467 + GC_rich Low_complexity Low_complexity 1 44 0 251 241 35 23 chr11 77199850 77199937 -71583535 - MIR SINE MIR -97 165 78 442 97 19 39 chr11 77200135 77200238 -71583234 + (GAAA)n Simple_repeat Simple_repeat 4 104 0 1553 184 16 13 chr11 77200582 77200892 -71582580 - AluJo SINE Alu -1 311 1 217 193 64 92 chr11 77200922 77201031 -71582441 + L3 LINE CR1 395 500 -1077 2439 89 0 0 chr11 77201059 77201361 -71582111 + AluSx SINE Alu 1 302 -10 2065 124 14 3 chr11 77201837 77202127 -71581345 + AluJb SINE Alu 5 297 -15 2173 86 4 14 chr11 77202129 77202408 -71581064 + AluSc SINE Alu 22 297 -12 2407 101 0 0 chr11 77202610 77202917 -71580555 - AluSc SINE Alu -2 307 1 2009 145 13 3 chr11 77203547 77203851 -71579621 - AluSx SINE Alu -1 311 5 2533 96 0 0 chr11 77203863 77204176 -71579296 - AluSq SINE Alu 0 313 1 928 157 25 0 chr11 77204398 77204557 -71578915 - FRAM SINE Alu -1 165 3 1511 197 46 30 chr11 77204915 77205220 -71578252 - AluJo SINE Alu -2 310 1 360 244 74 37 chr11 77205449 77205584 -71577888 - L1MC4 LINE L1 -760 7282 7143 2449 103 0 0 chr11 77205598 77205910 -71577562 - AluSx SINE Alu 0 312 1 1882 151 43 0 chr11 77206161 77206460 -71577012 + AluSx SINE Alu 1 312 0 763 161 0 16 chr11 77208355 77208479 -71574993 + FLAM_A SINE Alu 1 122 -11 2074 142 59 36 chr11 77208562 77208654 -71574818 + L1MB8 LINE L1 5725 5813 -365 2690 61 0 3 chr11 77208654 77208966 -71574506 + AluY SINE Alu 1 311 0 2074 142 59 36 chr11 77208966 77209317 -71574155 + L1MB8 LINE L1 5813 6178 0 1586 187 0 67 chr11 77209331 77209662 -71573810 + AluJb SINE Alu 1 309 -3 1100 430 18 4 chr11 77209695 77209972 -71573500 - AluSx SINE Alu -8 304 24 1451 148 110 0 chr11 77209972 77210208 -71573264 + AluSx SINE Alu 42 303 -9 315 296 113 84 chr11 77210229 77210432 -71573040 + L3 LINE CR1 1215 1423 -154 227 298 179 58 chr11 77210456 77210802 -71572670 - L2 LINE L2 -19 3253 2866 2457 92 0 0 chr11 77210906 77211209 -71572263 + AluSq SINE Alu 1 303 -10 204 260 39 48 chr11 77211233 77211337 -71572135 - L2 LINE L2 -989 2325 2223 204 40 0 0 chr11 77212159 77212184 -71571288 + (GGGAGA)n Simple_repeat Simple_repeat 2 26 0 21 36 0 0 chr11 77212269 77212297 -71571175 + AT_rich Low_complexity Low_complexity 1 28 0 923 133 0 16 chr11 77212304 77212432 -71571040 - FLAM_C SINE Alu -17 126 1 1696 151 37 7 chr11 77212455 77212726 -71570746 + AluJb SINE Alu 1 279 -33 246 62 0 0 chr11 77212726 77212758 -71570714 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2297 113 7 0 chr11 77213316 77213626 -71569846 - AluSx SINE Alu 0 312 1 245 139 0 0 chr11 77214563 77214599 -71568873 + Alu SINE Alu 136 171 -132 2830 7 0 0 chr11 77214615 77214915 -71568557 + AluYa5 SINE Alu 1 300 -11 1628 136 121 11 chr11 77215506 77215771 -71567701 - AluSg1 SINE Alu -15 294 1 1853 148 38 3 chr11 77215771 77216062 -71567410 - AluSx SINE Alu -11 301 1 2108 104 16 13 chr11 77216586 77216894 -71566578 - AluSg SINE Alu -1 309 1 2312 99 7 0 chr11 77217333 77217627 -71565845 + AluSq SINE Alu 3 298 -15 2322 105 0 0 chr11 77217698 77217993 -71565479 + AluSx SINE Alu 1 295 -17 955 229 0 0 chr11 77218868 77219043 -71564429 + FAM SINE Alu 1 175 0 2229 122 0 0 chr11 77219123 77219418 -71564054 - AluSg SINE Alu -15 295 1 183 42 0 0 chr11 77220150 77220174 -71563298 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1902 128 11 0 chr11 77220174 77220447 -71563025 - AluSq SINE Alu -37 276 1 191 164 33 172 chr11 77220755 77220877 -71562595 + MIR SINE MIR 70 174 -88 876 305 60 10 chr11 77221635 77221764 -71561708 - L1MDa LINE L1 -6120 420 299 180 0 0 0 chr11 77221764 77221784 -71561688 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 876 305 60 10 chr11 77221784 77222038 -71561434 - L1MDa LINE L1 -6241 299 18 1032 155 0 0 chr11 77222102 77222325 -71561147 + (TA)n Simple_repeat Simple_repeat 1 223 0 1698 170 22 0 chr11 77222326 77222596 -71560876 - AluJo SINE Alu -36 276 1 2068 107 18 0 chr11 77222678 77222984 -71560488 - AluSx SINE Alu 0 311 1 207 314 145 24 chr11 77223089 77223213 -71560259 + L2 LINE L2 3133 3271 -1 1179 80 223 0 chr11 77223742 77223930 -71559542 + MER30 DNA MER1_type 1 230 0 763 197 0 0 chr11 77223987 77224119 -71559353 - FLAM_A SINE Alu -1 132 1 1809 163 14 53 chr11 77224543 77224606 -71558866 - L1MC1 LINE L1 -5 6328 6264 2302 113 0 3 chr11 77224606 77224908 -71558564 + AluSg SINE Alu 1 301 -9 1809 163 14 53 chr11 77224908 77225200 -71558272 - L1MC1 LINE L1 -69 6264 5987 1130 184 0 0 chr11 77225200 77225379 -71558093 - AluJo SINE Alu -133 179 1 1719 289 105 61 chr11 77225389 77225519 -71557953 + L2 LINE L2 1780 1903 -1410 2093 119 0 32 chr11 77225519 77225830 -71557642 - AluSx SINE Alu -11 301 1 1719 289 105 61 chr11 77225830 77226777 -71556695 + L2 LINE L2 1903 2935 -378 2052 128 7 10 chr11 77226777 77227073 -71556399 - AluSx SINE Alu -17 295 1 1719 289 105 61 chr11 77227073 77227193 -71556279 + L2 LINE L2 2935 3048 -265 939 145 0 29 chr11 77227209 77227347 -71556125 + AluJo SINE Alu 1 134 -178 380 264 124 57 chr11 77227391 77227584 -71555888 + L2 LINE L2 3079 3284 -29 201 74 0 0 chr11 77227589 77227616 -71555856 + (A)n Simple_repeat Simple_repeat 1 27 0 311 179 0 0 chr11 77227616 77227672 -71555800 + L2 LINE L2 3258 3313 0 232 282 97 10 chr11 77227682 77227785 -71555687 + L2 LINE L2 3187 3298 -15 959 184 25 0 chr11 77227802 77227965 -71555507 + FAM SINE Alu 1 167 -8 340 231 22 0 chr11 77228091 77228182 -71555290 - L1ME1 LINE L1 -29 6137 6045 2205 106 10 29 chr11 77228592 77228903 -71554569 - AluSx SINE Alu -7 305 1 374 192 158 42 chr11 77228953 77229073 -71554399 + MIR SINE MIR 57 190 -72 365 267 19 0 chr11 77229080 77229185 -71554287 + MIR3 SINE MIR 81 187 -21 1659 159 21 31 chr11 77229224 77229513 -71553959 + AluJb SINE Alu 3 288 -24 21 36 0 0 chr11 77229947 77229975 -71553497 + AT_rich Low_complexity Low_complexity 1 28 0 2398 104 0 0 chr11 77230910 77231217 -71552255 - AluSg SINE Alu -3 307 1 195 305 12 49 chr11 77231392 77231474 -71551998 - L2 LINE L2 -1 3312 3234 2300 113 0 0 chr11 77231488 77231790 -71551682 + AluSx SINE Alu 1 302 -10 1794 171 10 3 chr11 77233688 77233980 -71549492 + AluJo SINE Alu 1 294 -18 444 171 0 0 chr11 77233990 77234060 -71549412 - AluJ/FLAM SINE Alu -241 71 2 1058 227 82 6 chr11 77234066 77234397 -71549075 - L1ME3A LINE L1 -4 6166 5811 * 1731 137 51 34 chr11 77234394 77234744 -71548728 + L1M3 LINE L1 5314 5669 -514 862 96 7 59 chr11 77234744 77234879 -71548593 - AluSg/x SINE Alu -15 297 170 497 278 86 125 chr11 77234888 77235295 -71548177 + L2 LINE L2 2867 3257 -15 204 304 71 0 chr11 77235730 77235786 -71547686 - L3b LINE CR1 -7 1576 1517 2063 124 37 7 chr11 77235801 77236100 -71547372 + AluSx SINE Alu 1 308 -4 1116 176 0 0 chr11 77236413 77236589 -71546883 - AluSg/x SINE Alu -3 307 132 210 71 0 0 chr11 77236600 77236628 -71546844 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 1841 98 83 47 chr11 77236628 77236904 -71546568 - AluSq SINE Alu -22 291 6 799 199 77 0 chr11 77237145 77237301 -71546171 - FAM SINE Alu -7 42 1 285 323 118 16 chr11 77237327 77237454 -71546018 - MIR SINE MIR -75 187 48 243 361 12 12 chr11 77237564 77237647 -71545825 - MIR3 SINE MIR -44 164 82 22 0 0 0 chr11 77238662 77238684 -71544788 + AT_rich Low_complexity Low_complexity 1 22 0 365 267 93 19 chr11 77239231 77239423 -71544049 - MIR SINE MIR -45 217 9 286 323 36 32 chr11 77239600 77239848 -71543624 + L2 LINE L2 2807 3055 -217 1006 276 25 4 chr11 77239860 77240099 -71543373 + MIR SINE MIR 6 249 -13 181 309 0 0 chr11 77240131 77240186 -71543286 + L2 LINE L2 3213 3267 -5 527 311 109 0 chr11 77240439 77240622 -71542850 + MIR SINE MIR 34 236 -26 280 261 179 0 chr11 77240868 77241002 -71542470 - L2 LINE L2 -235 3037 2880 394 254 49 33 chr11 77241704 77241826 -71541646 - MIR3 SINE MIR -76 132 9 207 349 35 0 chr11 77242444 77242530 -71540942 - MIR3 SINE MIR -13 195 107 214 209 243 9 chr11 77244056 77244143 -71539329 - MIR SINE MIR -74 188 76 226 248 18 101 chr11 77244180 77244289 -71539183 - L2 LINE L2 -493 2821 2722 1499 148 4 13 chr11 77244923 77245160 -71538312 - AluJb SINE Alu -19 293 59 515 330 85 24 chr11 77245488 77245718 -71537754 - MIR SINE MIR -7 255 16 486 291 34 17 chr11 77245718 77245897 -71537575 - MER5A DNA MER1_type 0 189 8 188 65 0 32 chr11 77246416 77246447 -71537025 + (GGGAGA)n Simple_repeat Simple_repeat 6 35 0 261 181 219 19 chr11 77246879 77246984 -71536488 - MIR SINE MIR 0 262 137 889 134 0 8 chr11 77247011 77247138 -71536334 - FLAM_C SINE Alu -17 126 1 2052 129 10 49 chr11 77247147 77247534 -71535938 - L1MB8 LINE L1 0 6178 5807 184 306 0 0 chr11 77247551 77247600 -71535872 - MIR SINE MIR -60 148 100 297 266 21 21 chr11 77247827 77247921 -71535551 + G-rich Low_complexity Low_complexity 1 94 0 400 302 43 14 chr11 77249078 77249217 -71534255 - MIR SINE MIR -8 254 112 186 260 151 14 chr11 77249292 77249365 -71534107 + L2 LINE L2 2982 3064 -208 2181 102 10 30 chr11 77249656 77249960 -71533512 - AluSx SINE Alu -10 302 5 566 279 76 0 chr11 77251126 77251304 -71532168 - MIR SINE MIR -50 212 21 189 153 69 83 chr11 77251938 77252010 -71531462 - MIR3 SINE MIR -28 180 110 230 299 52 0 chr11 77252257 77252334 -71531138 + MIR3 SINE MIR 114 194 -14 1813 155 0 34 chr11 77253268 77253565 -71529907 + AluJo SINE Alu 5 291 -21 276 321 111 48 chr11 77253631 77253883 -71529589 - L2 LINE L2 -76 3196 2929 349 270 78 17 chr11 77255063 77255178 -71528294 + MIR3 SINE MIR 42 163 -45 1045 121 0 0 chr11 77257162 77257302 -71526170 - AluSg/x SINE Alu -19 293 154 1126 195 199 181 chr11 77258300 77258606 -71524866 - L2 LINE L2 -555 2759 2460 854 86 60 0 chr11 77258606 77258755 -71524717 + FRAM SINE Alu 26 181 0 1126 195 199 181 chr11 77258755 77259235 -71524237 - L2 LINE L2 -854 2460 1840 734 291 87 38 chr11 77259239 77259320 -71524152 - L2 LINE L2 -619 2695 2619 2276 114 7 0 chr11 77259320 77259618 -71523854 + AluSx SINE Alu 1 300 -12 734 291 87 38 chr11 77259618 77260066 -71523406 - L2 LINE L2 -695 2619 2140 291 281 144 36 chr11 77260393 77260532 -71522940 - MIR SINE MIR -28 234 81 868 257 93 46 chr11 77260912 77261351 -71522121 + L2 LINE L2 1353 1812 -1502 987 266 65 19 chr11 77261565 77261998 -71521474 + L1MDa LINE L1 1672 2145 -4408 269 250 42 0 chr11 77262340 77262412 -71521060 + MER81 DNA DNA 38 112 -2 1044 45 23 23 chr11 77262790 77262922 -71520550 + AluSc SINE Alu 1 132 -177 191 186 47 47 chr11 77263105 77263148 -71520324 - MIR SINE MIR -84 124 82 395 287 73 7 chr11 77263237 77263387 -71520085 - MIR SINE MIR -76 186 27 1369 135 19 0 chr11 77263587 77263794 -71519678 + AluJo SINE Alu 87 297 -15 343 343 64 0 chr11 77264113 77264160 -71519312 + MIR SINE MIR 7 50 -212 2286 81 24 10 chr11 77264160 77264456 -71519016 + AluSc SINE Alu 1 300 -9 343 343 64 0 chr11 77264456 77264548 -71518924 + MIR SINE MIR 50 155 -107 1835 149 0 4 chr11 77264604 77264880 -71518592 - AluSx SINE Alu -37 275 1 460 211 92 0 chr11 77264881 77264990 -71518482 + MIR SINE MIR 122 240 -22 447 294 112 12 chr11 77265033 77265203 -71518269 + L2 LINE L2 3115 3301 -12 338 308 92 49 chr11 77265998 77266303 -71517169 + L2 LINE L2 2934 3251 -21 221 293 78 60 chr11 77266539 77266655 -71516817 + L2 LINE L2 3150 3267 -5 521 254 29 29 chr11 77266778 77266916 -71516556 + L2 LINE L2 3175 3312 -1 1941 174 0 3 chr11 77267221 77267525 -71515947 - AluJb SINE Alu -9 303 1 525 197 158 25 chr11 77267619 77267775 -71515697 + MIR SINE MIR 54 224 -38 280 323 226 15 chr11 77267814 77268603 -71514869 + L2 LINE L2 1783 2737 -577 547 197 57 25 chr11 77268606 77268728 -71514744 - MIR SINE MIR -19 243 118 375 288 133 72 chr11 77268797 77269172 -71514300 + L2 LINE L2 2836 3233 -39 291 276 171 0 chr11 77269526 77269631 -71513841 - L2 LINE L2 -8 3264 3142 233 333 53 35 chr11 77269640 77269754 -71513718 - MIR SINE MIR -61 147 32 1378 215 35 10 chr11 77270058 77270346 -71513126 + AluJo SINE Alu 1 295 -17 286 231 128 34 chr11 77270346 77270463 -71513009 + MIR SINE MIR 94 221 -41 474 298 132 15 chr11 77272241 77272446 -71511026 + MIR SINE MIR 20 248 -14 410 339 148 14 chr11 77272772 77273049 -71510423 + L2 LINE L2 2925 3238 -34 2020 152 3 0 chr11 77273326 77273629 -71509843 - AluSx SINE Alu -8 304 1 347 239 34 68 chr11 77273767 77273884 -71509588 + L2 LINE L2 3192 3304 -9 307 329 51 22 chr11 77274119 77274256 -71509216 + MER5A DNA MER1_type 39 179 -10 863 198 56 0 chr11 77274277 77274439 -71509033 - MER5B DNA MER1_type -7 171 1 273 289 0 26 chr11 77274451 77274527 -71508945 + MER5A DNA MER1_type 7 80 -109 226 267 0 33 chr11 77274484 77274544 -71508928 - MER5A DNA MER1_type -27 162 105 * 288 341 91 8 chr11 77274614 77274746 -71508726 - MIR3 SINE MIR -46 162 20 205 321 46 37 chr11 77275348 77275457 -71508015 + L2 LINE L2 2950 3059 -254 208 298 235 25 chr11 77275501 77275739 -71507733 + L2 LINE L2 2952 3239 -33 300 277 128 40 chr11 77275880 77276028 -71507444 - MIR SINE MIR -56 206 46 1066 204 11 0 chr11 77276891 77277077 -71506395 + MER5A DNA MER1_type 2 189 0 1220 151 39 0 chr11 77277085 77277291 -71506181 + MER20 DNA MER1_type 1 214 -5 2082 104 51 42 chr11 77277492 77277828 -71505644 + MER1B DNA MER1_type 1 339 0 2017 113 55 3 chr11 77277960 77278253 -71505219 + AluSg SINE Alu 1 308 -2 363 44 0 0 chr11 77278364 77278409 -71505063 + (CA)n Simple_repeat Simple_repeat 1 45 0 23 0 0 0 chr11 77278429 77278452 -71505020 + AT_rich Low_complexity Low_complexity 1 23 0 287 335 91 74 chr11 77278844 77279020 -71504452 + L2 LINE L2 3003 3181 -91 212 338 0 15 chr11 77279004 77279072 -71504400 - MIR3 SINE MIR -136 72 6 * 403 287 105 28 chr11 77279796 77279939 -71503533 + L2 LINE L2 2560 2713 -601 2049 139 0 0 chr11 77279940 77280234 -71503238 + AluSx SINE Alu 1 294 -18 270 250 11 34 chr11 77280282 77280370 -71503102 - MIR SINE MIR 0 262 177 4653 161 58 33 chr11 77280449 77281319 -71502153 - L1MB8 LINE L1 -1 6177 5330 1470 168 41 62 chr11 77281319 77281611 -71501861 - AluJb SINE Alu -26 286 1 4653 161 58 33 chr11 77281611 77281645 -71501827 - L1MB8 LINE L1 -848 5330 5298 2197 77 21 0 chr11 77281645 77281932 -71501540 + AluSc SINE Alu 1 293 -16 4653 161 58 33 chr11 77281932 77282033 -71501439 - L1MB8 LINE L1 -880 5298 5201 2045 129 72 32 chr11 77282033 77282381 -71501091 - L1PA16 LINE L1 0 6166 5805 4653 161 58 33 chr11 77282381 77283027 -71500445 - L1MB8 LINE L1 -977 5201 4367 2125 141 0 10 chr11 77283027 77283339 -71500133 - AluJb SINE Alu -3 309 1 4653 161 58 33 chr11 77283339 77283392 -71500080 - L1MB8 LINE L1 -1811 4367 4317 697 170 59 0 chr11 77283399 77283534 -71499938 + Charlie1 DNA MER1_type 2619 2761 0 1640 198 21 74 chr11 77283535 77283813 -71499659 - L1ME1 LINE L1 -5 6161 5918 1630 170 53 7 chr11 77283813 77284095 -71499377 - AluJo SINE Alu -17 295 1 1640 198 21 74 chr11 77284095 77284300 -71499172 - L1ME1 LINE L1 -248 5918 5704 634 263 63 16 chr11 77284423 77284613 -71498859 - MIR SINE MIR -50 212 14 361 240 135 0 chr11 77285904 77286008 -71497464 - MIR SINE MIR -13 249 132 329 315 28 0 chr11 77286221 77286329 -71497143 - L2 LINE L2 0 3313 3203 333 267 0 0 chr11 77286358 77286433 -71497039 + L2 LINE L2 1758 1832 -1482 286 160 27 53 chr11 77286449 77286524 -71496948 + Charlie1 DNA MER1_type 2183 2255 -506 748 161 15 0 chr11 77286540 77286670 -71496802 - L1MB7 LINE L1 -19 6165 6034 1616 206 4 0 chr11 77287265 77287546 -71495926 - AluJo SINE Alu -30 282 1 269 200 122 11 chr11 77287654 77287744 -71495728 + L1ME4a LINE L1 6021 6120 -1 192 261 26 139 chr11 77288403 77288481 -71494991 + MIR3 SINE MIR 104 167 -41 1726 167 3 30 chr11 77288481 77288781 -71494691 + AluJo SINE Alu 11 302 -10 192 261 26 139 chr11 77288781 77288817 -71494655 + MIR3 SINE MIR 167 205 -3 723 268 98 28 chr11 77289114 77289368 -71494104 + L2 LINE L2 2992 3263 -9 897 87 94 0 chr11 77289438 77289565 -71493907 + MER85 DNA T2_type 1 139 0 268 266 101 25 chr11 77289665 77289744 -71493728 + L2 LINE L2 3158 3242 -30 630 245 120 51 chr11 77289763 77289979 -71493493 - MIR SINE MIR -12 250 20 430 282 20 54 chr11 77290540 77290689 -71492783 + MIR SINE MIR 7 150 -112 816 204 43 27 chr11 77290796 77290982 -71492490 - MIR SINE MIR -70 192 4 993 163 178 93 chr11 77291302 77291457 -71492015 + AluJo SINE Alu 1 141 -171 2508 66 0 0 chr11 77291457 77291759 -71491713 + AluY SINE Alu 1 302 -9 993 163 178 93 chr11 77291759 77291873 -71491599 + AluJo SINE Alu 141 293 -19 225 0 0 0 chr11 77291973 77291998 -71491474 + (A)n Simple_repeat Simple_repeat 1 25 0 279 266 110 18 chr11 77292226 77292335 -71491137 - MIR SINE MIR -50 212 94 720 267 62 19 chr11 77292525 77292735 -71490737 - MIR SINE MIR -10 252 34 407 279 57 28 chr11 77293048 77293235 -71490237 + MIR SINE MIR 33 223 -39 311 283 0 40 chr11 77293285 77293384 -71490088 + MIR3 SINE MIR 109 203 -5 519 309 132 5 chr11 77293915 77294135 -71489337 - MIR SINE MIR -8 254 7 316 367 40 57 chr11 77294164 77294358 -71489114 + L2 LINE L2 2932 3121 -151 674 131 0 181 chr11 77294358 77294518 -71488954 - FLAM_A SINE Alu -2 131 1 316 367 40 57 chr11 77294518 77294620 -71488852 + L2 LINE L2 3121 3223 -49 1496 173 45 0 chr11 77295144 77295410 -71488062 + AluJb SINE Alu 1 278 -34 225 0 0 0 chr11 77295410 77295435 -71488037 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 407 269 113 25 chr11 77295593 77295753 -71487719 + MIR SINE MIR 20 193 -69 601 188 25 219 chr11 77295756 77296080 -71487392 - MIR SINE MIR 0 262 2 1216 169 14 5 chr11 77296240 77296447 -71487025 - MER3 DNA MER1_type 0 209 1 180 213 21 21 chr11 77296470 77296517 -71486955 + MIR3 SINE MIR 151 197 -11 1954 48 0 4 chr11 77296673 77296900 -71486572 + AluY SINE Alu 86 311 0 32363 74 11 4 chr11 77297128 77301358 -71482114 + L1PA5 LINE L1 5 4263 -1883 2751 35 10 0 chr11 77301369 77301682 -71481790 - L1PA4 LINE L1 -3 6152 5837 * 9215 48 1 1 chr11 77301678 77303541 -71479931 + L1PA5 LINE L1 4273 6152 -2 436 160 75 11 chr11 77303767 77303861 -71479611 - MER67C LTR ERV1 -62 648 549 292 303 30 30 chr11 77304891 77304990 -71478482 + LTR67 LTR ERVL 96 194 -363 259 312 46 9 chr11 77305196 77305305 -71478167 + LTR67 LTR ERVL 412 524 -33 325 241 36 88 chr11 77305668 77305805 -71477667 + MIR SINE MIR 16 145 -63 2121 92 29 14 chr11 77305897 77306201 -71477271 - AluSx SINE Alu 0 308 1 307 250 129 10 chr11 77306669 77306792 -71476680 - MIR SINE MIR -62 146 37 212 326 35 78 chr11 77307017 77307158 -71476314 - L2 LINE L2 -123 3149 3015 252 254 0 0 chr11 77307192 77307251 -71476221 + MIR SINE MIR 96 154 -108 346 339 60 46 chr11 77307847 77308130 -71475342 + L2 LINE L2 2823 3109 -163 211 198 123 86 chr11 77308185 77308266 -71475206 + L2 LINE L2 3127 3210 -62 288 285 60 5 chr11 77308590 77308671 -71474801 + MIR SINE MIR 61 144 -64 707 185 191 0 chr11 77308730 77308892 -71474580 - MER46A DNA MER2_type 0 236 44 21 0 0 0 chr11 77308955 77308976 -71474496 + AT_rich Low_complexity Low_complexity 1 21 0 240 186 51 0 chr11 77309669 77309728 -71473744 - MIR SINE MIR -119 143 82 456 233 31 54 chr11 77309777 77309906 -71473566 + L2 LINE L2 3188 3313 0 261 327 75 75 chr11 77309916 77310142 -71473330 - L2 LINE L2 -76 3196 2971 1828 179 74 56 chr11 77310199 77310408 -71473064 - Charlie4a DNA MER1_type -1468 493 289 2293 111 0 9 chr11 77310408 77310723 -71472749 + AluSx SINE Alu 1 312 0 1828 179 74 56 chr11 77310723 77310959 -71472513 - Charlie4a DNA MER1_type -1672 289 40 1911 164 11 0 chr11 77311908 77312221 -71471251 + AluJb SINE Alu 1 316 0 246 333 108 9 chr11 77312226 77312337 -71471135 + L3 LINE CR1 1424 1545 -32 212 272 97 7 chr11 77312559 77312645 -71470827 - MIR SINE MIR -86 122 38 190 319 53 0 chr11 77313460 77313554 -71469918 + MIR SINE MIR 116 214 -48 441 371 87 52 chr11 77313717 77314143 -71469329 + L2 LINE L2 2818 3258 -14 2420 60 22 3 chr11 77314565 77314879 -71468593 + L1PA7 LINE L1 5820 6139 -15 604 262 54 18 chr11 77314962 77315130 -71468342 + MIR SINE MIR 71 244 -18 297 343 34 43 chr11 77315943 77316150 -71467322 + MIR SINE MIR 20 224 -38 1044 204 56 88 chr11 77316287 77316572 -71466900 - AluJo SINE Alu -34 278 3 558 304 54 54 chr11 77316572 77316812 -71466660 - MIR SINE MIR -1 261 22 566 191 0 0 chr11 77316822 77316932 -71466540 - MER46C DNA MER2_type -1 337 228 633 227 32 19 chr11 77316941 77317095 -71466377 - MER58A DNA MER1_type -26 198 43 314 230 180 0 chr11 77317102 77317202 -71466270 - MER46C DNA MER2_type -216 122 5 285 248 31 85 chr11 77317303 77317432 -71466040 + MIR3 SINE MIR 81 202 -6 555 287 48 5 chr11 77317813 77318001 -71465471 - MIR SINE MIR -17 245 50 411 269 114 40 chr11 77318163 77318364 -71465108 - MIR SINE MIR -6 256 41 431 293 67 34 chr11 77318420 77318596 -71464876 + MIR SINE MIR 14 192 -64 387 60 0 0 chr11 77318652 77318702 -71464770 + (CAT)n Simple_repeat Simple_repeat 3 52 0 4691 47 6 25 chr11 77318796 77319171 -71464301 - L1P LINE L1 -1760 4386 4026 2284 76 24 0 chr11 77319171 77319462 -71464010 - AluY SINE Alu -13 298 1 4691 47 6 25 chr11 77319462 77319728 -71463744 - L1P LINE L1 -2120 4026 3757 7746 53 11 0 chr11 77319745 77321493 -71461979 + L1PA6 LINE L1 4397 6154 0 954 86 0 0 chr11 77321506 77321623 -71461849 - AluSq/x SINE Alu -195 117 1 630 143 90 0 chr11 77321625 77321758 -71461714 + LTR54 LTR ERV1 341 485 -25 924 184 19 0 chr11 77322190 77322348 -71461124 - FRAM SINE Alu -5 161 1 543 218 28 91 chr11 77322352 77322597 -71460875 - L1MD3 LINE L1 0 8036 7823 2399 207 83 2 chr11 77323183 77323715 -71459757 - MER90 LTR ERV1 0 575 1 531 260 7 41 chr11 77323951 77324097 -71459375 + MIR SINE MIR 21 161 -101 2302 84 3 3 chr11 77324329 77324625 -71458847 + AluSq SINE Alu 1 296 -17 279 341 49 24 chr11 77324779 77324902 -71458570 - L2 LINE L2 0 3272 3147 418 286 85 60 chr11 77325269 77325468 -71458004 - MIR SINE MIR -55 207 4 260 342 42 17 chr11 77325783 77325903 -71457569 + L2 LINE L2 2896 3018 -254 291 256 41 41 chr11 77326021 77326193 -71457279 + Charlie7 DNA MER1_type 2441 2612 0 621 127 36 18 chr11 77326251 77326416 -71457056 + L1PA16 LINE L1 6046 6212 0 900 263 34 81 chr11 77326710 77327286 -71456186 - L2 LINE L2 -21 3292 2757 800 114 0 0 chr11 77327294 77327399 -71456073 + AluSq/x SINE Alu 1 105 -207 308 71 0 0 chr11 77327403 77327445 -71456027 + Alu SINE Alu 233 274 -27 505 250 38 49 chr11 77327485 77327669 -71455803 - L2 LINE L2 -2406 908 727 204 298 106 19 chr11 77328176 77328280 -71455192 - MIR SINE MIR -64 144 32 221 191 16 0 chr11 77329068 77329108 -71454364 + (TA)n Simple_repeat Simple_repeat 1 44 -20 2292 88 3 7 chr11 77329108 77329402 -71454070 - AluSp SINE Alu -20 293 1 221 191 16 0 chr11 77329402 77329424 -71454048 + (TA)n Simple_repeat Simple_repeat 44 64 0 81 21 0 0 chr11 77330345 77330440 -71453032 + AT_rich Low_complexity Low_complexity 1 95 0 282 333 80 7 chr11 77330444 77330594 -71452878 - L2 LINE L2 -623 2691 2531 1115 139 53 37 chr11 77331231 77331475 -71451997 - L1M3 LINE L1 -677 5503 5256 533 241 41 21 chr11 77331483 77331628 -71451844 - MER82 DNA MER2_type -58 595 448 341 332 61 30 chr11 77331678 77331846 -71451626 + MIR SINE MIR 33 205 -57 498 215 0 0 chr11 77331862 77331955 -71451517 - MER82 DNA MER2_type -559 94 2 378 231 19 0 chr11 77331997 77332105 -71451367 + L1MC4 LINE L1 7933 8042 0 440 238 82 0 chr11 77332651 77332798 -71450674 + L1M4 LINE L1 3822 3980 -2166 333 229 14 0 chr11 77333046 77333116 -71450356 + L3 LINE CR1 1384 1454 -123 354 274 34 11 chr11 77333125 77333287 -71450185 - MIR SINE MIR -3 259 4 1903 159 3 17 chr11 77333910 77334212 -71449260 + AluSx SINE Alu 1 298 -14 581 295 50 15 chr11 77334422 77334622 -71448850 + MIR SINE MIR 6 212 -50 503 309 120 4 chr11 77335686 77335914 -71447558 - MIR SINE MIR -3 259 8 * 636 315 25 5 chr11 77335895 77336098 -71447374 + MIR SINE MIR 56 262 0 417 246 8 51 chr11 77336324 77336442 -71447030 - MIR SINE MIR -60 202 90 373 232 49 0 chr11 77336452 77336534 -71446938 + MIR SINE MIR 122 207 -55 2461 90 0 0 chr11 77336662 77336973 -71446499 + AluY SINE Alu 1 311 0 662 281 76 13 chr11 77337174 77337398 -71446074 + MIR SINE MIR 1 238 -24 213 344 90 8 chr11 77337789 77337911 -71445561 - L2 LINE L2 -5 3267 3136 603 317 70 111 chr11 77338611 77339588 -71443884 - L2 LINE L2 -191 3081 2154 199 156 44 22 chr11 77340054 77340099 -71443373 + MIR3 SINE MIR 154 199 -9 1409 181 80 0 chr11 77340874 77341188 -71442284 + L1MC4 LINE L1 6866 7204 -838 1087 218 109 24 chr11 77341183 77341560 -71441912 + L1MC4 LINE L1 7506 7914 -128 * 264 194 15 0 chr11 77341609 77341676 -71441796 + L1MC4 LINE L1 7912 7979 -63 2148 124 0 0 chr11 77342320 77342618 -71440854 - AluSx SINE Alu -14 298 1 884 300 172 12 chr11 77342768 77343361 -71440111 + L2 LINE L2 2552 3256 -57 672 274 60 58 chr11 77343812 77344087 -71439385 + L1ME4a LINE L1 5385 5658 -463 2176 82 0 11 chr11 77344087 77344366 -71439106 + AluSq SINE Alu 1 276 -37 270 0 0 0 chr11 77344370 77344400 -71439072 + (CA)n Simple_repeat Simple_repeat 1 30 0 672 274 60 58 chr11 77344400 77344582 -71438890 + L1ME4a LINE L1 5660 5848 -273 264 243 87 38 chr11 77344727 77344912 -71438560 + L1ME4a LINE L1 5928 6121 0 2531 64 0 6 chr11 77344916 77345229 -71438243 + AluY SINE Alu 1 311 0 585 296 88 35 chr11 77345679 77345905 -71437567 + MIR SINE MIR 1 238 -24 363 96 0 0 chr11 77345914 77345966 -71437506 + (TAA)n Simple_repeat Simple_repeat 1 52 0 2249 96 0 29 chr11 77346839 77347174 -71436298 + AluY SINE Alu 1 311 0 249 277 10 30 chr11 77347561 77347662 -71435810 + MIR SINE MIR 123 221 -41 355 304 93 43 chr11 77347864 77348025 -71435447 - MIR3 SINE MIR -23 185 17 418 289 26 18 chr11 77348111 77348225 -71435247 + MIR SINE MIR 16 130 -132 228 258 106 0 chr11 77348253 77348319 -71435153 + L1MC4 LINE L1 5830 5902 -1906 2339 127 3 3 chr11 77348319 77348680 -71434792 + MER46B DNA MER2_type 1 236 0 1451 72 111 0 chr11 77348740 77348947 -71434525 - MER30 DNA MER1_type 0 230 1 534 70 0 0 chr11 77348967 77349038 -71434434 + (CA)n Simple_repeat Simple_repeat 2 72 0 4248 169 28 7 chr11 77349459 77350443 -71433029 + L1MB7 LINE L1 5101 6099 -85 2068 138 0 3 chr11 77350444 77350748 -71432724 + AluSx SINE Alu 1 303 -9 351 376 42 12 chr11 77351157 77351322 -71432150 + L2 LINE L2 3101 3270 -2 1993 150 0 19 chr11 77351742 77352055 -71431417 - AluJo SINE Alu -5 307 1 322 50 0 0 chr11 77352188 77352228 -71431244 + LTR23 LTR ERV1 321 360 -77 398 167 37 9 chr11 77352258 77352366 -71431106 + (CATA)n Simple_repeat Simple_repeat 2 112 0 3806 159 1 0 chr11 77352581 77353843 -71429629 + L1P5 LINE L1 4529 5791 -360 232 268 24 0 chr11 77353849 77353931 -71429541 + L1MC4 LINE L1 6619 6702 -1340 201 154 0 0 chr11 77353941 77353980 -71429492 + (TA)n Simple_repeat Simple_repeat 2 40 0 221 333 0 22 chr11 77354113 77354203 -71429269 + GA-rich Low_complexity Low_complexity 1 88 0 379 304 29 19 chr11 77354264 77354575 -71428897 + GA-rich Low_complexity Low_complexity 1 314 0 297 104 0 0 chr11 77354622 77354670 -71428802 + Alu SINE Alu 250 297 -3 191 283 131 10 chr11 77355142 77355241 -71428231 - L3b LINE CR1 -253 1330 1220 1033 61 0 0 chr11 77355241 77355372 -71428100 - AluY SINE Alu -4 307 177 269 330 161 0 chr11 77355943 77356055 -71427417 + L2 LINE L2 3104 3233 -39 250 363 84 60 chr11 77356059 77356310 -71427162 - L2 LINE L2 -97 3175 2919 231 288 0 0 chr11 77356332 77356391 -71427081 - L2 LINE L2 -13 3259 3201 461 231 0 0 chr11 77356583 77356687 -71426785 - MLT1L LTR MaLR 0 615 512 837 188 123 31 chr11 77356735 77356996 -71426476 + L1MD3 LINE L1 7707 7991 -4 27 51 0 17 chr11 77356996 77357024 -71426448 + AT_rich Low_complexity Low_complexity 1 28 -30 1976 138 14 0 chr11 77357024 77357307 -71426165 + AluJo SINE Alu 1 287 -25 27 51 0 17 chr11 77357307 77357337 -71426135 + AT_rich Low_complexity Low_complexity 28 58 0 2138 132 3 13 chr11 77357343 77357654 -71425818 + AluSx SINE Alu 1 308 -4 505 139 0 0 chr11 77357657 77357729 -71425743 + AluS SINE Alu 1 72 -241 2143 132 0 0 chr11 77357790 77358086 -71425386 + AluSx SINE Alu 1 296 -16 660 271 78 63 chr11 77359067 77359306 -71424166 + L3 LINE CR1 1277 1522 -55 2629 49 0 0 chr11 77359306 77359610 -71423862 + AluY SINE Alu 1 304 -7 660 271 78 63 chr11 77359610 77359654 -71423818 + L3 LINE CR1 1522 1564 -13 497 270 40 10 chr11 77359726 77359926 -71423546 - L1MC5 LINE L1 -60 7901 7696 325 246 102 8 chr11 77360179 77360297 -71423175 + L1ME4a LINE L1 5978 6106 -15 1331 117 0 15 chr11 77360297 77360494 -71422978 - AluSg/x SINE Alu -2 310 117 270 0 0 0 chr11 77360776 77360806 -71422666 + (CA)n Simple_repeat Simple_repeat 2 31 0 363 215 18 98 chr11 77360821 77360950 -71422522 - MER117 DNA MER1_type -44 153 38 2227 100 31 0 chr11 77360950 77361240 -71422232 + AluSq SINE Alu 1 299 -14 363 215 18 98 chr11 77361240 77361273 -71422199 - MER117 DNA MER1_type -159 38 4 2370 95 0 13 chr11 77361648 77361953 -71421519 + AluSx SINE Alu 1 301 -11 1900 138 0 30 chr11 77361964 77362261 -71421211 + AluJb SINE Alu 13 300 -12 215 256 122 12 chr11 77362263 77362345 -71421127 + MIR SINE MIR 63 153 -109 279 281 34 22 chr11 77362465 77362554 -71420918 - MIR SINE MIR -36 226 137 2225 62 33 0 chr11 77362874 77363176 -71420296 - AluSp SINE Alu 0 311 1 2185 85 27 3 chr11 77363213 77363506 -71419966 + AluY SINE Alu 1 300 -11 388 252 153 0 chr11 77363540 77363651 -71419821 - MIR SINE MIR -115 147 20 502 229 57 0 chr11 77364667 77364772 -71418700 + MER81 DNA DNA 4 114 0 1034 183 21 5 chr11 77364811 77364997 -71418475 + MER5A DNA MER1_type 1 189 0 276 299 30 22 chr11 77365071 77365205 -71418267 - L2 LINE L2 -465 2849 2715 280 200 173 40 chr11 77365209 77365359 -71418113 - L1MC4a LINE L1 -1873 5935 5766 180 296 0 0 chr11 77365378 77365422 -71418050 - L2 LINE L2 -223 3049 3006 715 213 85 0 chr11 77365490 77365654 -71417818 - AluSg/x SINE Alu -10 302 125 293 352 11 11 chr11 77365860 77366039 -71417433 + CT-rich Low_complexity Low_complexity 2 180 0 322 296 20 0 chr11 77366316 77366414 -71417058 + MIR SINE MIR 41 140 -68 592 79 0 0 chr11 77366663 77366739 -71416733 + Alu SINE Alu 2 77 -232 405 282 67 0 chr11 77366779 77366928 -71416544 + MIR SINE MIR 47 205 -57 276 217 0 0 chr11 77367276 77367336 -71416136 - L2 LINE L2 0 3272 3213 2299 93 7 0 chr11 77367352 77367643 -71415829 + AluSx SINE Alu 9 301 -11 1879 139 0 30 chr11 77367654 77367949 -71415523 + AluJb SINE Alu 13 298 -14 184 256 122 12 chr11 77367951 77368033 -71415439 + MIR SINE MIR 63 153 -109 252 281 34 22 chr11 77368153 77368242 -71415230 - MIR SINE MIR -36 226 137 2225 62 33 0 chr11 77368562 77368864 -71414608 - AluSp SINE Alu 0 311 1 2171 89 27 3 chr11 77368901 77369194 -71414278 + AluY SINE Alu 1 300 -11 388 252 153 0 chr11 77369228 77369339 -71414133 - MIR SINE MIR -115 147 20 542 226 47 0 chr11 77370365 77370471 -71413001 + MER81 DNA DNA 4 114 0 1034 183 21 5 chr11 77370510 77370696 -71412776 + MER5A DNA MER1_type 1 189 0 276 299 30 22 chr11 77370770 77370904 -71412568 - L2 LINE L2 -465 2849 2715 296 199 166 40 chr11 77370908 77371059 -71412413 - L1MC4a LINE L1 -1873 5935 5766 180 296 0 0 chr11 77371078 77371122 -71412350 - L2 LINE L2 -223 3049 3006 2211 88 34 17 chr11 77371190 77371485 -71411987 - AluSg SINE Alu -10 300 1 1803 178 14 3 chr11 77371522 77371814 -71411658 - AluJb SINE Alu -17 295 1 2480 83 3 0 chr11 77372241 77372543 -71410929 + AluSp SINE Alu 1 303 -10 2245 90 7 13 chr11 77372555 77372865 -71410607 + AluY SINE Alu 1 308 -3 1211 147 131 95 chr11 77372874 77372939 -71410533 + L1MA7 LINE L1 5911 5972 -319 2027 140 0 0 chr11 77372939 77373231 -71410241 + AluSx SINE Alu 7 298 -14 273 98 0 0 chr11 77373231 77373272 -71410200 + (TA)n Simple_repeat Simple_repeat 1 41 0 1211 147 131 95 chr11 77373272 77373572 -71409900 + L1MA7 LINE L1 5971 6290 -1 310 155 0 17 chr11 77374148 77374206 -71409266 - L1MC4 LINE L1 -1 8041 7985 23 33 0 0 chr11 77374222 77374252 -71409220 + AT_rich Low_complexity Low_complexity 1 30 0 369 217 6 161 chr11 77374252 77374307 -71409165 - L1MC4 LINE L1 -40 8002 7940 2331 98 3 0 chr11 77374307 77374602 -71408870 - AluSx SINE Alu -16 296 1 369 217 6 161 chr11 77374602 77374726 -71408746 - L1MC4 LINE L1 -102 7940 7851 536 163 39 23 chr11 77374738 77374867 -71408605 + MLT2D LTR ERVL 1 131 -333 805 173 0 0 chr11 77374887 77375014 -71408458 + AluJb SINE Alu 166 292 -20 1157 161 68 44 chr11 77375025 77375273 -71408199 + MLT2D LTR ERVL 113 366 -48 1709 182 11 40 chr11 77375363 77375669 -71407803 - L1M4 LINE L1 -382 5802 5507 2286 103 23 0 chr11 77375669 77375970 -71407502 - AluSq SINE Alu -5 308 1 1709 182 11 40 chr11 77375970 77376037 -71407435 - L1M4 LINE L1 -677 5507 5440 * 3298 197 64 39 chr11 77376005 77376829 -71406643 - L1MC4a LINE L1 -500 7308 6464 331 180 30 0 chr11 77377030 77377107 -71406365 + L1M4 LINE L1 5352 5431 -743 203 289 122 0 chr11 77377145 77377235 -71406237 - MIR SINE MIR -114 148 48 648 133 19 0 chr11 77377320 77377425 -71406047 - FLAM_C SINE Alu -18 125 19 238 336 26 18 chr11 77377475 77377588 -71405884 - MIR SINE MIR -78 184 71 258 105 0 0 chr11 77378041 77378079 -71405393 + (T)n Simple_repeat Simple_repeat 1 38 0 8554 30 13 276 chr11 77378081 77379946 -71403526 - SVA Other Other -4 1382 8 240 208 0 0 chr11 77379946 77379995 -71403477 + Alu SINE Alu 231 274 -28 200 138 0 0 chr11 77381368 77381397 -71402075 - MIR SINE MIR -104 104 76 393 22 0 0 chr11 77382458 77382504 -71400968 + (TA)n Simple_repeat Simple_repeat 2 47 0 2451 74 6 47 chr11 77382504 77382744 -71400728 + L1PB1 LINE L1 5796 6018 -133 2372 94 3 0 chr11 77382744 77383043 -71400429 + AluSp SINE Alu 1 300 -13 2451 74 6 47 chr11 77383043 77383165 -71400307 + L1PB1 LINE L1 6018 6143 -8 339 344 124 5 chr11 77383744 77383962 -71399510 - MIR SINE MIR 0 262 19 2145 139 0 7 chr11 77384018 77384321 -71399151 - AluJb SINE Alu -11 301 1 2186 126 0 0 chr11 77384747 77385041 -71398431 - AluSx SINE Alu -13 299 6 389 198 110 0 chr11 77385127 77385218 -71398254 + MER3 DNA MER1_type 105 205 -4 5303 61 0 0 chr11 77385238 77385892 -71397580 - L1PA6 LINE L1 0 6154 5501 894 152 8 0 chr11 77385986 77386118 -71397354 + FLAM_C SINE Alu 1 133 0 197 265 17 86 chr11 77386118 77386235 -71397237 - L2 LINE L2 -353 2919 2811 318 269 200 0 chr11 77386301 77386431 -71397041 + MIR SINE MIR 37 192 -70 2209 123 0 7 chr11 77386435 77386743 -71396729 + AluSx SINE Alu 1 306 -6 240 317 156 6 chr11 77387500 77387680 -71395792 + L3 LINE CR1 1206 1412 -165 506 309 69 18 chr11 77387815 77388032 -71395440 + MIR SINE MIR 1 228 -34 331 336 103 0 chr11 77388490 77388606 -71394866 - L2 LINE L2 0 3272 3145 2010 100 30 0 chr11 77388862 77389133 -71394339 - AluSq SINE Alu -13 300 22 854 164 97 53 chr11 77389513 77389720 -71393752 - MER20 DNA MER1_type 0 219 4 2327 233 126 74 chr11 77390140 77390307 -71393165 - HAL1 LINE L1 -4 2503 2346 1470 170 56 11 chr11 77390307 77390577 -71392895 - AluJo SINE Alu -30 282 1 2327 233 126 74 chr11 77390577 77391509 -71391963 - HAL1 LINE L1 -161 2346 1347 2001 209 41 90 chr11 77391530 77391586 -71391886 - L1MB3 LINE L1 -5 6178 6121 2220 113 3 3 chr11 77391586 77391887 -71391585 + AluSx SINE Alu 1 301 -11 2001 209 41 90 chr11 77391887 77392138 -71391334 - L1MB3 LINE L1 -62 6121 5859 1616 162 35 21 chr11 77392138 77392428 -71391044 - AluJb SINE Alu -18 294 1 2001 209 41 90 chr11 77392428 77392993 -71390479 - L1MB3 LINE L1 -324 5859 5384 2457 68 0 3 chr11 77392993 77393288 -71390184 - AluY SINE Alu -17 294 1 2001 209 41 90 chr11 77393288 77393660 -71389812 - L1MB3 LINE L1 -799 5384 4995 257 0 30 0 chr11 77393660 77393693 -71389779 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 4932 21 0 0 chr11 77393693 77394211 -71389261 - SVA Other Other -23 1363 846 10285 34 5 136 chr11 77394588 77396152 -71387320 - SVA Other Other -27 1359 1 222 0 0 73 chr11 77396152 77396193 -71387279 + (GGGAGA)n Simple_repeat Simple_repeat 2 39 0 1974 175 26 28 chr11 77396199 77396248 -71387224 - L1MB3 LINE L1 -1144 5002 4954 1752 170 7 26 chr11 77396248 77396554 -71386918 - AluJo SINE Alu -12 300 1 1974 175 26 28 chr11 77396554 77396926 -71386546 - L1MB3 LINE L1 -1192 4954 4582 227 169 102 0 chr11 77396928 77396987 -71386485 - L1MB3 LINE L1 -1621 4525 4461 818 175 121 6 chr11 77396987 77397153 -71386319 - AluJb SINE Alu -9 303 119 1140 143 0 0 chr11 77397198 77397359 -71386113 + AluSg/x SINE Alu 135 295 -15 518 269 8 0 chr11 77397406 77397540 -71385932 - L1MB3 LINE L1 -2282 3864 3730 1865 116 49 18 chr11 77397595 77397880 -71385592 - AluSx SINE Alu -4 308 15 2078 144 0 0 chr11 77398090 77398396 -71385076 + AluSx SINE Alu 1 306 -6 336 314 136 5 chr11 77398406 77398597 -71384875 - MIR SINE MIR -27 235 20 217 312 61 13 chr11 77399176 77399322 -71384150 - MIR SINE MIR -62 146 20 183 323 108 0 chr11 77399744 77399809 -71383663 - L2 LINE L2 -12 3301 3230 197 305 137 11 chr11 77399941 77400036 -71383436 - MIR SINE MIR -67 141 35 661 258 122 9 chr11 77400104 77400325 -71383147 - MIR SINE MIR -11 251 6 808 212 0 93 chr11 77400373 77400566 -71382906 + FAM SINE Alu 1 175 0 22 35 0 0 chr11 77400668 77400697 -71382775 + AT_rich Low_complexity Low_complexity 1 29 0 1464 177 12 4 chr11 77400762 77401011 -71382461 - AluJo SINE Alu -26 286 36 654 192 32 16 chr11 77401158 77401283 -71382189 + MLT1E3 LTR MaLR 1 127 -497 988 181 0 0 chr11 77401291 77401451 -71382021 - AluJb SINE Alu -15 297 138 539 234 171 6 chr11 77401453 77401628 -71381844 + MLT1E3 LTR MaLR 88 291 -335 201 322 141 62 chr11 77401807 77401847 -71381625 - L3 LINE CR1 -13 1564 1529 2041 114 23 0 chr11 77401847 77402155 -71381317 + L1PA16 LINE L1 5852 6166 0 201 322 141 62 chr11 77402155 77402341 -71381131 - L3 LINE CR1 -48 1529 1320 375 235 168 0 chr11 77402571 77402690 -71380782 + MIR SINE MIR 112 250 -12 1501 54 34 5 chr11 77402772 77402976 -71380496 + L1PA7 LINE L1 5944 6153 -1 728 146 0 0 chr11 77403039 77403149 -71380323 - FLAM_A SINE Alu -1 141 32 447 310 92 22 chr11 77403150 77403421 -71380051 + L2 LINE L2 3024 3313 0 211 306 141 0 chr11 77403418 77403503 -71379969 - L3 LINE CR1 -465 1112 1016 * 25 65 0 0 chr11 77403555 77403601 -71379871 + AT_rich Low_complexity Low_complexity 1 46 0 2347 105 0 3 chr11 77403601 77403905 -71379567 - AluSx SINE Alu -9 303 1 191 298 40 32 chr11 77405139 77405263 -71378209 + MIR SINE MIR 125 249 -13 335 333 66 22 chr11 77405328 77405511 -71377961 + L2 LINE L2 3117 3307 -6 182 283 0 17 chr11 77406449 77406509 -71376963 - MIR SINE MIR -4 258 200 223 241 35 35 chr11 77407658 77407745 -71375727 - L2 LINE L2 -1 3312 3226 1790 141 3 25 chr11 77407746 77408029 -71375443 + AluJo SINE Alu 14 290 -22 21 71 0 0 chr11 77408493 77408535 -71374937 + AT_rich Low_complexity Low_complexity 1 42 0 1174 127 0 18 chr11 77409377 77409543 -71373929 - FRAM SINE Alu -20 156 1 23 0 0 0 chr11 77409543 77409566 -71373906 + AT_rich Low_complexity Low_complexity 1 23 0 2671 68 0 0 chr11 77409723 77410033 -71373439 - AluSg SINE Alu 0 310 1 487 256 68 8 chr11 77411191 77411324 -71372148 + MIR SINE MIR 47 187 -75 402 275 131 13 chr11 77411346 77411582 -71371890 + HAL1 LINE L1 51 314 -2193 3438 211 31 8 chr11 77411588 77412384 -71371088 - L1M4 LINE L1 -1097 5049 4235 1035 228 62 62 chr11 77412480 77412804 -71370668 + MLT1D LTR MaLR 1 324 -181 392 286 17 98 chr11 77412793 77412919 -71370553 - L1MC4a LINE L1 -1090 6803 6668 * 2313 93 7 3 chr11 77412919 77413221 -71370251 - AluSg1 SINE Alu -6 303 1 392 286 17 98 chr11 77413221 77413582 -71369890 - L1MC4a LINE L1 -1225 6668 6281 841 179 0 0 chr11 77413844 77413978 -71369494 + AluSq/x SINE Alu 1 134 -179 1761 186 3 0 chr11 77414030 77414325 -71369147 - AluJb SINE Alu -16 296 1 747 244 25 15 chr11 77414358 77414555 -71368917 - L1MC4a LINE L1 -1940 5868 5670 258 230 151 0 chr11 77414569 77414702 -71368770 - L1MEd LINE L1 -4795 1334 1168 443 158 122 0 chr11 77414702 77414784 -71368688 + Tigger4(Zombi) DNA MER2_type 1 92 -2639 * 4981 110 13 27 chr11 77414778 77414935 -71368537 + Tigger4(Zombi) DNA MER2_type 1970 2128 -603 2506 169 34 7 chr11 77414935 77415350 -71368122 + MSTB LTR MaLR 1 426 0 9268 172 26 35 chr11 77415350 77415825 -71367647 + MSTB-int LTR MaLR 1 479 -1172 1468 193 8 15 chr11 77415825 77416089 -71367383 + AluJo SINE Alu 34 295 -17 9268 172 26 35 chr11 77416089 77417280 -71366192 + MSTB-int LTR MaLR 479 1651 0 2394 138 97 8 chr11 77417280 77417671 -71365801 + MSTB LTR MaLR 1 426 0 4981 110 13 27 chr11 77417671 77418284 -71365188 + Tigger4(Zombi) DNA MER2_type 2125 2731 0 309 276 71 67 chr11 77418290 77418529 -71364943 - L1MEd LINE L1 -4942 1177 938 416 289 98 95 chr11 77418634 77419264 -71364208 - L1MEd LINE L1 -5393 726 95 32 95 0 0 chr11 77419273 77419368 -71364104 + AT_rich Low_complexity Low_complexity 1 95 0 935 268 106 25 chr11 77419458 77419816 -71363656 + HAL1 LINE L1 1588 1974 -533 705 273 111 99 chr11 77419850 77420418 -71363054 - L1ME3A LINE L1 -29 6141 5567 396 286 67 17 chr11 77420432 77420610 -71362862 - L1ME3A LINE L1 -662 5508 5322 413 252 77 21 chr11 77420618 77420761 -71362711 + HAL1 LINE L1 1984 2134 -373 399 325 79 0 chr11 77420801 77420927 -71362545 - MIR SINE MIR -124 138 3 1484 220 68 15 chr11 77420977 77421273 -71362199 - L1ME3A LINE L1 -979 5167 4843 3610 116 71 2 chr11 77421273 77421791 -71361681 - MER41C LTR ERV1 0 554 1 1484 220 68 15 chr11 77421791 77421890 -71361582 - L1ME3A LINE L1 -1303 4843 4751 21 36 0 0 chr11 77421952 77421980 -71361492 + AT_rich Low_complexity Low_complexity 1 28 0 297 209 171 29 chr11 77422027 77422132 -71361340 - L2 LINE L2 -10 3303 3184 433 219 78 16 chr11 77422252 77422380 -71361092 - MIR SINE MIR -74 188 53 1569 169 40 10 chr11 77423191 77423492 -71359980 - AluJo SINE Alu -2 310 1 727 78 0 0 chr11 77423505 77423595 -71359877 - 5S rRNA rRNA -31 90 1 216 261 0 112 chr11 77424074 77424208 -71359264 + L2 LINE L2 3195 3313 0 996 225 0 0 chr11 77424210 77424379 -71359093 - FAM SINE Alu -6 169 1 2348 106 47 36 chr11 77424406 77424766 -71358706 - THE1B LTR MaLR 0 364 1 22 35 0 0 chr11 77424850 77424879 -71358593 + AT_rich Low_complexity Low_complexity 1 29 0 360 0 0 0 chr11 77425098 77425138 -71358334 + (TG)n Simple_repeat Simple_repeat 1 40 0 2133 107 0 4 chr11 77425138 77425419 -71358053 - AluSx SINE Alu -32 280 1 666 179 8 16 chr11 77425581 77425704 -71357768 - FLAM_A SINE Alu -1 141 20 2682 42 0 0 chr11 77425705 77426011 -71357461 - AluY SINE Alu -5 306 1 518 263 136 25 chr11 77426266 77426464 -71357008 + MIR SINE MIR 5 224 -38 525 214 107 8 chr11 77426975 77427106 -71356366 + MER5B DNA MER1_type 35 178 0 216 237 0 68 chr11 77427107 77427166 -71356306 + L2 LINE L2 3214 3268 -4 27 49 0 0 chr11 77427454 77427495 -71355977 + AT_rich Low_complexity Low_complexity 1 41 0 385 257 99 50 chr11 77427705 77427927 -71355545 - L1MC4a LINE L1 -1945 5863 5631 2190 133 9 160 chr11 77429234 77429759 -71353713 - MER65C LTR ERV1 -15 446 1 968 122 86 90 chr11 77430566 77430844 -71352628 - MER33 DNA MER1_type 0 324 48 401 200 0 27 chr11 77430955 77431030 -71352442 - FLAM SINE Alu -15 128 56 498 271 36 7 chr11 77431159 77431299 -71352173 + L3 LINE CR1 1111 1254 -323 1767 175 3 0 chr11 77431318 77431604 -71351868 - AluJo SINE Alu -25 287 1 335 248 188 23 chr11 77431615 77431748 -71351724 - MIR SINE MIR -3 259 105 233 276 0 17 chr11 77432690 77432748 -71350724 - L2 LINE L2 -9 3263 3207 2276 101 0 0 chr11 77432769 77433066 -71350406 + AluSc SINE Alu 1 297 -12 473 290 15 30 chr11 77433088 77433219 -71350253 - L2 LINE L2 -2 3270 3142 239 303 90 0 chr11 77433343 77433432 -71350040 + MIR SINE MIR 149 245 -17 1846 172 13 0 chr11 77433837 77434140 -71349332 - AluJo SINE Alu -5 307 1 239 302 47 23 chr11 77434347 77434433 -71349039 - L2 LINE L2 -608 2706 2619 277 261 87 0 chr11 77434562 77434654 -71348818 + L1MC/D LINE L1 3635 3734 -2412 911 179 0 7 chr11 77434655 77434800 -71348672 + FRAM SINE Alu 4 147 -29 616 284 196 38 chr11 77434841 77435170 -71348302 + L1MC/D LINE L1 3732 4008 -2138 2412 178 33 7 chr11 77435170 77435591 -71347881 + MSTB1 LTR MaLR 1 432 0 616 284 196 38 chr11 77435591 77436188 -71347284 + L1MC/D LINE L1 4008 4805 -1341 386 307 83 70 chr11 77436285 77436643 -71346829 + L1MC/D LINE L1 5068 5431 -757 17310 118 33 3 chr11 77436662 77439168 -71344304 + L1M1 LINE L1 12 2593 -4972 962 154 13 0 chr11 77439217 77439373 -71344099 - MER65C LTR ERV1 0 461 304 2683 132 36 3 chr11 77439376 77440112 -71343360 + L1PA13 LINE L1 4886 5645 -516 30 45 0 0 chr11 77440173 77440217 -71343255 + AT_rich Low_complexity Low_complexity 1 44 0 3410 129 8 13 chr11 77440223 77440750 -71342722 + L1PA13 LINE L1 5640 6163 0 845 200 15 23 chr11 77440754 77441012 -71342460 - MER65C LTR ERV1 -160 301 1 263 244 252 24 chr11 77441012 77441135 -71342337 - Charlie8 DNA MER1_type -1956 461 311 751 279 78 3 chr11 77441150 77441505 -71341967 + L1M4 LINE L1 3337 3759 -2387 699 200 0 0 chr11 77441505 77441615 -71341857 + FLAM_A SINE Alu 1 110 -32 183 49 73 0 chr11 77441619 77441660 -71341812 + (TA)n Simple_repeat Simple_repeat 2 45 0 2324 189 45 45 chr11 77441774 77442331 -71341141 - LTR27 LTR ERV1 -77 559 3 265 282 82 9 chr11 77442446 77442556 -71340916 + L2 LINE L2 3155 3272 0 315 289 41 21 chr11 77442659 77442756 -71340716 + MIR SINE MIR 20 118 -90 235 320 120 0 chr11 77443258 77443383 -71340089 + MIR SINE MIR 13 152 -110 636 246 80 15 chr11 77444255 77444454 -71339018 + MIR SINE MIR 28 239 -23 617 110 12 0 chr11 77444609 77444691 -71338781 + AluJ/FLAM SINE Alu 2 84 -228 488 224 67 0 chr11 77445755 77445889 -71337583 + MIR SINE MIR 81 223 -39 185 375 54 30 chr11 77446355 77446523 -71336949 + L2 LINE L2 2921 3092 -180 1753 169 20 53 chr11 77447008 77447364 -71336108 + MER2 DNA MER2_type 1 344 0 374 133 17 0 chr11 77448173 77448233 -71335239 + MER96 DNA MER1_type? 112 172 -3 234 355 48 42 chr11 77449454 77449622 -71333850 - MIR SINE MIR -86 176 3 297 242 0 53 chr11 77449780 77449875 -71333597 - MIR SINE MIR -15 247 158 187 244 122 73 chr11 77450102 77450184 -71333288 - L2 LINE L2 -54 3218 3133 525 251 126 36 chr11 77450760 77450817 -71332655 + MER112 DNA MER1_type 9 59 -201 321 68 0 0 chr11 77450817 77450861 -71332611 + (CA)n Simple_repeat Simple_repeat 2 45 0 525 251 126 36 chr11 77450861 77451026 -71332446 + MER112 DNA MER1_type 59 251 -9 844 281 0 55 chr11 77451306 77451580 -71331892 - MIR SINE MIR 0 262 4 535 279 20 20 chr11 77451582 77451783 -71331689 - L1ME LINE L1 -369 5752 5552 883 141 0 16 chr11 77452298 77452426 -71331046 - FLAM_A SINE Alu -6 127 2 235 262 251 21 chr11 77452752 77452913 -71330559 - MIR SINE MIR -65 197 3 267 31 0 0 chr11 77452977 77453009 -71330463 + (CA)n Simple_repeat Simple_repeat 1 32 0 22 35 0 0 chr11 77454669 77454698 -71328774 + AT_rich Low_complexity Low_complexity 1 29 0 615 226 82 7 chr11 77454792 77455060 -71328412 - L1ME1 LINE L1 -9 6157 5720 2189 118 0 10 chr11 77455060 77455374 -71328098 - AluSx SINE Alu -1 311 1 261 276 198 8 chr11 77455448 77455632 -71327840 - MIR SINE MIR -14 248 20 461 216 34 132 chr11 77455766 77455970 -71327502 + MER5A DNA MER1_type 1 184 -5 235 250 0 0 chr11 77455975 77456027 -71327445 + MIR3 SINE MIR 154 205 -3 297 314 69 0 chr11 77456118 77456235 -71327237 + MIR SINE MIR 40 163 -91 274 234 146 76 chr11 77456695 77456853 -71326619 - L2 LINE L2 0 3272 3104 298 311 148 16 chr11 77456945 77457189 -71326283 - L2 LINE L2 -454 2860 2585 1862 253 116 4 chr11 77457461 77457944 -71325528 + MLT1H LTR MaLR 13 549 0 269 295 113 77 chr11 77458513 77458567 -71324905 + MLT1H-int LTR MaLR 1024 1075 -296 1767 124 95 3 chr11 77458567 77458850 -71324622 - AluSx SINE Alu -2 310 2 269 295 113 77 chr11 77458850 77459131 -71324341 + MLT1H-int LTR MaLR 1075 1371 0 2124 241 63 19 chr11 77459131 77459654 -71323818 + MLT1H LTR MaLR 1 546 -3 234 274 104 7 chr11 77459714 77459849 -71323623 + L1MC5 LINE L1 7782 7929 -32 860 241 55 47 chr11 77459882 77459956 -71323516 + L2 LINE L2 2118 2190 -1124 2518 60 0 3 chr11 77459956 77460255 -71323217 - AluY SINE Alu -13 298 1 860 241 55 47 chr11 77460255 77460433 -71323039 + L2 LINE L2 2190 2372 -942 1512 176 77 35 chr11 77460435 77460748 -71322724 + MLT1F LTR MaLR 1 326 -216 239 314 97 66 chr11 77461010 77461236 -71322236 - L2 LINE L2 -39 3233 3001 318 317 191 10 chr11 77461548 77461747 -71321725 + L3 LINE CR1 1334 1568 -9 248 279 116 48 chr11 77462126 77462273 -71321199 + LTR67 LTR ERVL 113 269 -288 221 0 0 33 chr11 77462663 77462693 -71320779 + (TCTCCC)n Simple_repeat Simple_repeat 1 29 0 4476 58 3 0 chr11 77462694 77463259 -71320213 + SVA Other Other 52 618 -768 200 222 0 0 chr11 77463362 77463407 -71320065 + A-rich Low_complexity Low_complexity 1 45 0 763 146 0 0 chr11 77463444 77463554 -71319918 - FLAM_A SINE Alu -1 141 32 520 310 92 22 chr11 77463555 77463826 -71319646 + L2 LINE L2 3024 3313 0 242 306 141 0 chr11 77463823 77463908 -71319564 - L3 LINE CR1 -465 1112 1016 * 202 220 0 0 chr11 77463958 77464008 -71319464 + (TA)n Simple_repeat Simple_repeat 1 50 0 2213 111 0 10 chr11 77464008 77464314 -71319158 - AluSx SINE Alu -9 303 1 232 298 40 32 chr11 77465548 77465672 -71317800 + MIR SINE MIR 125 249 -13 366 335 62 26 chr11 77465726 77465920 -71317552 + L2 LINE L2 3107 3307 -6 218 327 71 9 chr11 77466827 77466940 -71316532 - MIR SINE MIR -4 258 139 251 241 35 35 chr11 77468036 77468123 -71315349 - L2 LINE L2 -1 3312 3226 1777 141 3 25 chr11 77468124 77468407 -71315065 + AluJo SINE Alu 14 290 -22 21 71 0 0 chr11 77468871 77468913 -71314559 + AT_rich Low_complexity Low_complexity 1 42 0 213 303 8 59 chr11 77468998 77469117 -71314355 - L2 LINE L2 -218 3054 2942 1602 175 35 14 chr11 77469755 77469925 -71313547 - AluJo SINE Alu -20 292 112 208 70 47 0 chr11 77469925 77469968 -71313504 + (TA)n Simple_repeat Simple_repeat 2 46 0 1602 175 35 14 chr11 77469968 77470083 -71313389 - AluJo SINE Alu -200 112 1 711 256 74 0 chr11 77470084 77470437 -71313035 - L1M4 LINE L1 -2389 3757 3337 253 244 252 24 chr11 77470452 77470575 -71312897 + Charlie8 DNA MER1_type 311 461 -1956 821 200 15 23 chr11 77470575 77470833 -71312639 + MER65C LTR ERV1 1 301 -160 3165 129 8 13 chr11 77470837 77471364 -71312108 - L1PA13 LINE L1 0 6163 5640 233 282 14 0 chr11 77471400 77471471 -71312001 + L1M4 LINE L1 3479 3550 -2596 2602 132 36 3 chr11 77471475 77472211 -71311261 - L1P4 LINE L1 -516 5645 4886 914 160 13 0 chr11 77472214 77472370 -71311102 + MER65C LTR ERV1 304 461 0 * 3185 279 69 54 chr11 77472370 77473108 -71310364 + Charlie8 DNA MER1_type 461 1187 -1230 342 0 0 0 chr11 77473108 77473146 -71310326 + (CA)n Simple_repeat Simple_repeat 1 38 0 3185 279 69 54 chr11 77473146 77473171 -71310301 + Charlie8 DNA MER1_type 1187 1210 -1207 2217 92 7 0 chr11 77473171 77473496 -71309976 + AluSx SINE Alu 2 328 0 3185 279 69 54 chr11 77473496 77473533 -71309939 + Charlie8 DNA MER1_type 1210 1245 -1172 1711 175 3 7 chr11 77473533 77473819 -71309653 + AluJo SINE Alu 1 285 -27 3185 279 69 54 chr11 77473819 77474631 -71308841 + Charlie8 DNA MER1_type 1245 2100 -317 333 198 28 0 chr11 77474773 77474879 -71308593 + (TA)n Simple_repeat Simple_repeat 1 109 0 246 308 0 0 chr11 77474931 77474996 -71308476 + Charlie8 DNA MER1_type 2312 2376 -41 2066 230 83 130 chr11 77475327 77475766 -71307706 - HAL1 LINE L1 -10 2497 2039 729 183 0 0 chr11 77475766 77475886 -71307586 - FLAM_A SINE Alu -11 131 12 2066 230 83 130 chr11 77475886 77476556 -71306916 - HAL1 LINE L1 -468 2039 1327 2110 105 3 50 chr11 77476597 77476920 -71306552 + AluSx SINE Alu 5 312 0 810 211 77 46 chr11 77476950 77477301 -71306171 - L1MC5 LINE L1 -54 7907 7546 2235 112 0 10 chr11 77477315 77477627 -71305845 - AluSg SINE Alu -1 309 1 239 241 19 0 chr11 77477634 77477688 -71305784 - HAL1 LINE L1 -1162 1345 1291 1955 134 0 31 chr11 77477709 77478029 -71305443 - AluSx SINE Alu 0 312 2 680 255 119 26 chr11 77478075 77478495 -71304977 + L1MEc LINE L1 782 1240 -5156 2613 243 60 44 chr11 77478509 77479350 -71304122 + L1MB7 LINE L1 3191 4017 -2129 1407 184 84 8 chr11 77479350 77479611 -71303861 + AluJo SINE Alu 2 282 -30 392 0 21 0 chr11 77479614 77479662 -71303810 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 2613 243 60 44 chr11 77479662 77479859 -71303613 + L1MB7 LINE L1 4018 4250 -1896 1944 186 47 116 chr11 77479872 77480725 -71302747 + L1MB7 LINE L1 4409 5202 -944 529 117 52 0 chr11 77480744 77480821 -71302651 + LTR23 LTR ERV1 320 400 -37 264 59 0 0 chr11 77480860 77480894 -71302578 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 786 190 19 39 chr11 77480895 77480992 -71302480 + L1MB7 LINE L1 5254 5351 -811 899 235 56 5 chr11 77480992 77481205 -71302267 - MER58A DNA MER1_type 0 224 1 786 190 19 39 chr11 77481205 77481357 -71302115 + L1MB7 LINE L1 5351 5507 -655 3026 158 68 15 chr11 77481713 77482262 -71301210 + L1MB7 LINE L1 5551 6134 -50 1811 156 6 35 chr11 77482262 77482397 -71301075 + AluJb SINE Alu 1 138 -174 2104 110 3 3 chr11 77482397 77482709 -71300763 + AluSc SINE Alu 1 312 0 1811 156 6 35 chr11 77482709 77482887 -71300585 + AluJb SINE Alu 138 306 -6 3026 158 68 15 chr11 77482887 77482921 -71300551 + L1MB7 LINE L1 6134 6165 -19 691 227 0 0 chr11 77482933 77483065 -71300407 + FLAM_A SINE Alu 2 133 0 1869 159 0 3 chr11 77483091 77483381 -71300091 + AluSx SINE Alu 1 289 -23 283 270 66 67 chr11 77483596 77483876 -71299596 - L1ME LINE L1 -364 5757 5477 21 0 0 0 chr11 77483991 77484012 -71299460 + AT_rich Low_complexity Low_complexity 1 21 0 5915 142 23 18 chr11 77484354 77484844 -71298628 + L1MA6 LINE L1 4901 5387 -913 2367 97 3 0 chr11 77484844 77485155 -71298317 + AluSq SINE Alu 1 312 -1 5915 142 23 18 chr11 77485155 77485410 -71298062 + L1MA6 LINE L1 5387 5639 -661 6920 97 48 55 chr11 77485410 77486648 -71296824 + Tigger3b DNA MER2_type 2 1231 0 5915 142 23 18 chr11 77486648 77487292 -71296180 + L1MA6 LINE L1 5639 6300 0 22 0 0 0 chr11 77487778 77487800 -71295672 + AT_rich Low_complexity Low_complexity 1 22 0 1889 158 14 0 chr11 77488216 77488508 -71294964 - AluJo SINE Alu -6 306 11 247 198 117 27 chr11 77488623 77488734 -71294738 + L1MC4a LINE L1 5813 5933 -1875 2553 97 21 16 chr11 77489804 77490177 -71293295 + THE1C LTR MaLR 1 375 0 288 288 115 36 chr11 77490833 77490972 -71292500 + MIR SINE MIR 2 151 -111 1527 209 7 3 chr11 77491192 77491495 -71291977 + AluJo SINE Alu 1 304 0 1618 133 12 128 chr11 77492058 77492395 -71291077 - AluJb SINE Alu -4 298 1 2453 68 0 23 chr11 77492431 77492738 -71290734 + AluY SINE Alu 1 300 -11 391 331 101 0 chr11 77492832 77492980 -71290492 - MIR3 SINE MIR -6 202 40 451 335 25 15 chr11 77493200 77493400 -71290072 - MIR SINE MIR -22 240 39 269 225 50 12 chr11 77493459 77493539 -71289933 - MIR SINE MIR -106 156 74 211 167 150 33 chr11 77493845 77493905 -71289567 + L2 LINE L2 3247 3313 0 673 262 116 18 chr11 77494368 77494593 -71288879 + MIR SINE MIR 3 249 -13 242 271 200 0 chr11 77496675 77496760 -71286712 - L2 LINE L2 -1 3271 3170 2180 131 0 6 chr11 77499924 77500236 -71283236 - AluSx SINE Alu 0 312 3 207 354 37 0 chr11 77500484 77500566 -71282906 - MIR3 SINE MIR -14 194 110 263 274 126 42 chr11 77500590 77500685 -71282787 - MIR SINE MIR -68 140 38 356 325 184 5 chr11 77501108 77501314 -71282158 - MIR SINE MIR 0 262 20 2376 72 7 0 chr11 77501617 77501910 -71281562 + AluSp SINE Alu 1 295 -18 905 246 0 0 chr11 77501943 77502118 -71281354 - FAM SINE Alu 0 175 1 354 267 79 61 chr11 77502162 77502317 -71281155 - MIR SINE MIR -64 144 19 449 270 148 15 chr11 77502341 77502547 -71280925 + MIR SINE MIR 32 260 -2 260 220 68 0 chr11 77502743 77502802 -71280670 - MIR SINE MIR -71 137 75 680 157 97 8 chr11 77502843 77503020 -71280452 - L1MB7 LINE L1 0 6178 5985 2269 101 0 14 chr11 77503118 77503415 -71280057 - AluSx SINE Alu -7 305 13 313 347 51 46 chr11 77503420 77503575 -71279897 - L1 LINE L1 -1140 5006 4853 1741 161 45 3 chr11 77503575 77503861 -71279611 + AluJb SINE Alu 1 298 -14 313 347 51 46 chr11 77503861 77504224 -71279248 - L1 LINE L1 -1293 4853 4487 1276 215 120 60 chr11 77504457 77504923 -71278549 - MLT1L LTR MaLR -103 512 19 199 259 86 0 chr11 77505576 77505634 -71277838 + MIR SINE MIR 60 122 -86 1180 171 10 15 chr11 77505693 77505898 -71277574 + AluJb SINE Alu 85 288 -24 237 298 60 36 chr11 77506659 77506743 -71276729 + L2 LINE L2 3109 3194 -78 2822 13 0 13 chr11 77507428 77507745 -71275727 - AluYb8 SINE Alu -5 313 1 213 234 65 13 chr11 77507963 77508040 -71275432 - MER5C DNA MER1_type -12 312 232 1522 191 66 6 chr11 77508155 77508474 -71274998 - MER58B DNA MER1_type 0 341 4 229 250 250 8 chr11 77508531 77508663 -71274809 + MIR SINE MIR 40 203 -59 344 223 161 23 chr11 77508707 77508763 -71274709 + HsTC2 DNA Tc2 1 48 -1850 1962 120 0 4 chr11 77508763 77509029 -71274443 - AluSx SINE Alu -19 293 29 344 223 161 23 chr11 77509029 77509102 -71274370 + HsTC2 DNA Tc2 48 148 -1750 812 239 179 72 chr11 77509109 77509272 -71274200 + HsTC2 DNA Tc2 1279 1423 -475 948 118 0 15 chr11 77509272 77509407 -71274065 + FLAM_C SINE Alu 1 133 0 1917 160 0 0 chr11 77509416 77509716 -71273756 + AluJo SINE Alu 6 305 -7 812 239 179 72 chr11 77509716 77509973 -71273499 + HsTC2 DNA Tc2 1430 1755 -143 224 196 374 0 chr11 77510172 77510279 -71273193 + L2 LINE L2 3167 3313 0 208 211 53 18 chr11 77510503 77510560 -71272912 + MIR SINE MIR 160 218 -44 207 244 77 141 chr11 77511131 77511287 -71272185 + L2 LINE L2 3123 3268 -4 2617 65 0 0 chr11 77511386 77511692 -71271780 - AluSg SINE Alu -2 308 3 528 259 67 11 chr11 77512838 77512984 -71270488 + MIR SINE MIR 39 187 -62 404 275 131 13 chr11 77513006 77513242 -71270230 + HAL1 LINE L1 51 314 -2193 3291 217 31 8 chr11 77513248 77514044 -71269428 - L1M4 LINE L1 -1097 5049 4235 1026 228 62 62 chr11 77514140 77514464 -71269008 + MLT1D LTR MaLR 1 324 -181 304 256 2 13 chr11 77514464 77514552 -71268920 - L1MC4 LINE L1 -1249 6778 6636 2275 93 7 3 chr11 77514579 77514881 -71268591 - AluSg1 SINE Alu -6 303 1 455 334 24 76 chr11 77514913 77515242 -71268230 - L1MC4a LINE L1 -1216 6592 6281 833 179 0 0 chr11 77515504 77515638 -71267834 + AluSq/x SINE Alu 1 134 -179 1771 186 3 0 chr11 77515690 77515985 -71267487 - AluJb SINE Alu -16 296 1 718 244 25 15 chr11 77516018 77516215 -71267257 - L1MC4a LINE L1 -1940 5868 5670 247 212 45 0 chr11 77516296 77516362 -71267110 - L1MEd LINE L1 -4869 1250 1182 430 146 122 0 chr11 77516362 77516444 -71267028 + Tigger4(Zombi) DNA MER2_type 1 92 -2639 * 4820 110 13 27 chr11 77516438 77516595 -71266877 + Tigger4(Zombi) DNA MER2_type 1970 2128 -603 2313 169 34 7 chr11 77516595 77517010 -71266462 + MSTB LTR MaLR 1 426 0 8533 175 24 34 chr11 77517010 77517485 -71265987 + MSTB-int LTR MaLR 1 479 -1172 1468 193 8 15 chr11 77517485 77517749 -71265723 + AluJo SINE Alu 34 295 -17 8533 175 24 34 chr11 77517749 77518940 -71264532 + MSTB-int LTR MaLR 479 1651 0 2203 138 97 8 chr11 77518940 77519331 -71264141 + MSTB LTR MaLR 1 426 0 4820 110 13 27 chr11 77519331 77519944 -71263528 + Tigger4(Zombi) DNA MER2_type 2125 2731 0 286 280 71 67 chr11 77519950 77520189 -71263283 - L1MEd LINE L1 -4942 1177 938 425 294 94 91 chr11 77520294 77520924 -71262548 - L1MEd LINE L1 -5393 726 95 26 88 0 0 chr11 77520960 77521028 -71262444 + AT_rich Low_complexity Low_complexity 1 68 0 899 268 106 25 chr11 77521118 77521476 -71261996 + HAL1 LINE L1 1588 1974 -533 651 273 111 99 chr11 77521510 77522078 -71261394 - L1ME3A LINE L1 -29 6141 5567 377 286 67 17 chr11 77522092 77522270 -71261202 - L1ME3A LINE L1 -662 5508 5322 388 252 77 21 chr11 77522278 77522421 -71261051 + HAL1 LINE L1 1984 2134 -373 415 318 79 0 chr11 77522461 77522587 -71260885 - MIR SINE MIR -124 138 3 1318 218 84 25 chr11 77522630 77522933 -71260539 - L1ME3A LINE L1 -969 5177 4843 3349 116 71 2 chr11 77522933 77523451 -71260021 - MER41C LTR ERV1 0 554 1 1318 218 84 25 chr11 77523451 77523550 -71259922 - L1ME3A LINE L1 -1303 4843 4751 21 36 0 0 chr11 77523612 77523640 -71259832 + AT_rich Low_complexity Low_complexity 1 28 0 287 253 119 88 chr11 77523687 77523881 -71259591 - L2 LINE L2 -10 3303 3104 438 219 78 16 chr11 77523912 77524040 -71259432 - MIR SINE MIR -74 188 53 1555 169 40 10 chr11 77524851 77525152 -71258320 - AluJo SINE Alu -2 310 1 723 78 0 0 chr11 77525165 77525255 -71258217 - 5S rRNA rRNA -31 90 1 236 261 0 112 chr11 77525734 77525868 -71257604 + L2 LINE L2 3195 3313 0 924 225 0 0 chr11 77525870 77526039 -71257433 - FAM SINE Alu -6 169 1 2168 117 42 31 chr11 77526066 77526426 -71257046 - THE1B LTR MaLR 0 364 1 22 35 0 0 chr11 77526510 77526539 -71256933 + AT_rich Low_complexity Low_complexity 1 29 0 360 0 0 0 chr11 77526758 77526798 -71256674 + (TG)n Simple_repeat Simple_repeat 1 40 0 2122 107 0 4 chr11 77526798 77527079 -71256393 - AluSx SINE Alu -32 280 1 612 179 8 16 chr11 77527241 77527364 -71256108 - FLAM_A SINE Alu -1 141 20 2666 42 0 0 chr11 77527365 77527671 -71255801 - AluY SINE Alu -5 306 1 530 283 116 5 chr11 77527926 77528124 -71255348 + MIR SINE MIR 5 224 -38 531 214 107 8 chr11 77528635 77528766 -71254706 + MER5B DNA MER1_type 35 178 0 229 241 0 52 chr11 77528767 77528825 -71254647 + L2 LINE L2 3214 3268 -4 368 279 93 44 chr11 77529365 77529591 -71253881 - L1MC4a LINE L1 -1945 5863 5627 2120 133 9 160 chr11 77530893 77531418 -71252054 - MER65C LTR ERV1 -15 446 1 867 137 86 90 chr11 77532225 77532503 -71250969 - MER33 DNA MER1_type 0 324 48 394 178 14 27 chr11 77532616 77532689 -71250783 - FLAM SINE Alu -6 127 56 514 271 36 7 chr11 77532818 77532958 -71250514 + L3 LINE CR1 1111 1254 -323 1773 173 3 0 chr11 77532977 77533260 -71250212 - AluJo SINE Alu -25 287 4 350 248 188 23 chr11 77533274 77533407 -71250065 - MIR SINE MIR -3 259 105 241 276 0 17 chr11 77534349 77534407 -71249065 - L2 LINE L2 -9 3263 3207 2261 101 0 0 chr11 77534428 77534725 -71248747 + AluSc SINE Alu 1 297 -12 470 290 15 30 chr11 77534747 77534878 -71248594 - L2 LINE L2 -2 3270 3142 252 303 90 0 chr11 77535002 77535091 -71248381 + MIR SINE MIR 149 245 -17 1830 172 13 0 chr11 77535496 77535799 -71247673 - AluJo SINE Alu -5 307 1 241 302 47 23 chr11 77536006 77536092 -71247380 - L2 LINE L2 -608 2706 2619 257 256 89 0 chr11 77536221 77536311 -71247161 + L1MC/D LINE L1 3635 3732 -2414 918 179 0 7 chr11 77536314 77536459 -71247013 + FRAM SINE Alu 4 147 -29 530 294 163 30 chr11 77536500 77536830 -71246642 + L1MC/D LINE L1 3732 4017 -2129 2222 178 33 7 chr11 77536830 77537251 -71246221 + MSTB1 LTR MaLR 1 432 0 530 294 163 30 chr11 77537251 77537624 -71245848 + L1MC/D LINE L1 4017 4529 -1617 408 296 67 68 chr11 77537643 77538303 -71245169 + L1MC/D LINE L1 4600 5431 -757 23831 133 36 13 chr11 77538322 77541462 -71242010 + L1MA3 LINE L1 12 3079 -4645 1601 188 35 0 chr11 77541462 77541750 -71241722 + AluJb SINE Alu 1 298 -14 23831 133 36 13 chr11 77541750 77543657 -71239815 + L1MA3 LINE L1 3079 4941 -2783 2117 152 0 0 chr11 77543657 77543967 -71239505 + AluSx SINE Alu 1 310 -2 23831 133 36 13 chr11 77543967 77546449 -71237023 + L1MA3 LINE L1 4941 7716 -8 357 264 196 14 chr11 77546745 77546893 -71236579 + MER5B DNA MER1_type 2 176 -2 775 247 36 0 chr11 77546893 77547087 -71236385 + MIR SINE MIR 33 233 -29 209 330 84 31 chr11 77547275 77547466 -71236006 + L2 LINE L2 3113 3313 0 490 287 0 8 chr11 77547892 77548014 -71235458 + MIR3 SINE MIR 47 167 -41 2112 124 0 0 chr11 77548901 77549183 -71234289 - AluSx SINE Alu -30 282 1 25 65 0 0 chr11 77549241 77549287 -71234185 + AT_rich Low_complexity Low_complexity 1 46 0 10794 25 0 1 chr11 77549339 77551381 -71232091 - L1PA2 LINE L1 -4 6151 4112 22 0 0 0 chr11 77551569 77551591 -71231881 + AT_rich Low_complexity Low_complexity 1 22 0 395 279 123 67 chr11 77552134 77552313 -71231159 + MER5A DNA MER1_type 1 189 0 22 0 0 0 chr11 77552473 77552495 -71230977 + AT_rich Low_complexity Low_complexity 1 22 0 354 230 142 9 chr11 77552626 77552739 -71230733 - MIR SINE MIR -60 202 75 1398 189 143 47 chr11 77553141 77553527 -71229945 - LTR41 LTR ERVL -6 767 345 744 196 21 7 chr11 77553592 77553735 -71229737 - LTR41 LTR ERVL -627 146 2 931 48 88 0 chr11 77554846 77554971 -71228501 + MER85 DNA T2_type 2 137 -2 186 317 67 10 chr11 77555120 77555224 -71228248 + MIR SINE MIR 147 256 -6 22 0 0 0 chr11 77555724 77555746 -71227726 + AT_rich Low_complexity Low_complexity 1 22 0 436 306 79 5 chr11 77556015 77556226 -71227246 - MIR SINE MIR 0 262 33 376 172 20 20 chr11 77556941 77557040 -71226432 - L1ME4a LINE L1 -259 5862 5764 503 221 147 7 chr11 77557047 77557183 -71226289 - MLT1F LTR MaLR -370 172 18 1450 156 3 138 chr11 77557421 77557797 -71225675 - AluJb SINE Alu 0 332 1 254 288 50 0 chr11 77558052 77558132 -71225340 + MIR3 SINE MIR 124 207 -1 230 287 170 11 chr11 77558307 77558401 -71225071 - L2 LINE L2 -6 3266 3158 1645 135 0 96 chr11 77559070 77559403 -71224069 - AluJb SINE Alu -11 301 1 222 328 82 30 chr11 77559422 77559556 -71223916 - L2 LINE L2 -4 3309 3169 2913 273 125 19 chr11 77559910 77559927 -71223545 - L2 LINE L2 -527 2787 2773 1979 156 0 29 chr11 77559927 77560234 -71223238 + AluJo SINE Alu 1 298 -14 2913 273 125 19 chr11 77560234 77561502 -71221970 - L2 LINE L2 -541 2773 1366 346 295 103 50 chr11 77561664 77562093 -71221379 + L2 LINE L2 2760 3308 -5 24 0 0 0 chr11 77562472 77562496 -71220976 + AT_rich Low_complexity Low_complexity 1 24 0 251 242 30 0 chr11 77562523 77562589 -71220883 + CT-rich Low_complexity Low_complexity 3 70 0 308 222 0 42 chr11 77562937 77563009 -71220463 - MIR SINE MIR -18 244 176 1947 232 55 52 chr11 77563012 77563674 -71219798 - L1MC5 LINE L1 -46 7915 7249 2402 87 0 0 chr11 77563674 77563973 -71219499 - AluY SINE Alu -12 299 1 1947 232 55 52 chr11 77563973 77564038 -71219434 - L1MC5 LINE L1 -712 7249 7186 561 298 114 6 chr11 77564038 77564196 -71219276 - MIR SINE MIR -62 200 26 314 274 258 28 chr11 77565110 77565275 -71218197 + MIR SINE MIR 4 208 -54 2539 59 0 13 chr11 77565973 77566279 -71217193 - AluY SINE Alu -9 302 1 694 126 44 59 chr11 77566362 77566497 -71216975 - FLAM_A SINE Alu 0 133 1 257 260 45 13 chr11 77567096 77567225 -71216247 - MIR SINE MIR -61 147 58 326 240 224 0 chr11 77567252 77567377 -71216095 - MIR SINE MIR -28 234 82 4090 172 30 12 chr11 77567520 77568878 -71214594 - L1MB8 LINE L1 -152 6026 4643 265 270 57 100 chr11 77568887 77568998 -71214474 - MIR SINE MIR -30 232 135 2573 69 0 3 chr11 77568998 77569302 -71214170 + AluSc SINE Alu 1 303 -6 265 270 57 100 chr11 77569302 77569420 -71214052 - MIR SINE MIR -127 135 13 341 267 121 26 chr11 77570041 77570157 -71213315 - MIR SINE MIR -63 145 19 4362 172 95 23 chr11 77570188 77571687 -71211785 - L1MB2 LINE L1 0 6171 4547 269 254 112 96 chr11 77572184 77572381 -71211091 + MIR SINE MIR 57 256 -6 1568 169 65 60 chr11 77572625 77572993 -71210479 - MLT1A2 LTR MaLR -4 370 1 290 313 47 71 chr11 77573594 77573805 -71209667 + MIR SINE MIR 1 206 -56 1987 145 7 3 chr11 77573882 77574186 -71209286 - AluSx SINE Alu -7 305 1 297 328 71 16 chr11 77574273 77574456 -71209016 + MIR SINE MIR 1 193 -69 346 250 167 22 chr11 77574647 77574827 -71208645 + L2 LINE L2 2133 2338 -976 206 271 106 24 chr11 77575131 77575216 -71208256 - L2 LINE L2 -8 3264 3173 330 297 110 13 chr11 77575269 77575424 -71208048 + MIR SINE MIR 22 191 -71 327 273 27 91 chr11 77575666 77575886 -71207586 + MIR SINE MIR 37 242 -20 268 288 45 38 chr11 77576005 77576137 -71207335 - L2 LINE L2 -2 3311 3179 281 185 15 15 chr11 77576337 77576402 -71207070 + MIR SINE MIR 71 135 -73 185 338 138 0 chr11 77576518 77576598 -71206874 - MIR3 SINE MIR -7 201 111 223 172 52 35 chr11 77576739 77576797 -71206675 + MIR SINE MIR 204 262 0 236 338 0 0 chr11 77576813 77576890 -71206582 + L2 LINE L2 2780 2856 -458 236 354 12 0 chr11 77577021 77577103 -71206369 + L2 LINE L2 3104 3186 -86 180 0 0 0 chr11 77578503 77578523 -71204949 + (T)n Simple_repeat Simple_repeat 1 20 0 1374 118 11 114 chr11 77578525 77578796 -71204676 - AluSx SINE Alu -69 243 1 1153 176 10 10 chr11 77578957 77579161 -71204311 - MER20 DNA MER1_type 0 219 16 198 242 48 16 chr11 77581283 77581345 -71202127 + MIR SINE MIR 31 94 -168 385 312 88 45 chr11 77581408 77581783 -71201689 + L2 LINE L2 2236 2626 -688 545 294 62 5 chr11 77581838 77582049 -71201423 + MIR SINE MIR 27 249 -13 316 220 260 0 chr11 77582103 77582203 -71201269 + MER5A DNA MER1_type 20 145 -44 349 216 82 10 chr11 77582437 77582534 -71200938 - MIR SINE MIR -47 215 112 248 278 151 13 chr11 77582746 77582905 -71200567 - MIR SINE MIR -44 218 31 2154 125 10 0 chr11 77583527 77583824 -71199648 - AluSx SINE Alu -12 300 1 186 340 52 31 chr11 77584097 77584288 -71199184 - L2 LINE L2 -609 2705 2511 356 265 82 0 chr11 77584928 77585026 -71198446 - MIR SINE MIR -70 138 33 385 250 76 8 chr11 77585116 77585248 -71198224 + MIR SINE MIR 52 192 -70 1874 90 75 15 chr11 77585516 77585810 -71197662 + AluSq SINE Alu 1 310 0 3367 174 73 1 chr11 77585838 77586524 -71196948 - L1MB4 LINE L1 -10 6170 5436 569 86 0 12 chr11 77587078 77587159 -71196313 - MADE1 DNA Mariner 0 80 1 2432 189 50 55 chr11 77587327 77587962 -71195510 - LTR27 LTR ERV1 -2 634 3 231 282 82 9 chr11 77588077 77588187 -71195285 + L2 LINE L2 3155 3272 0 332 283 20 20 chr11 77588290 77588389 -71195083 + MIR SINE MIR 20 118 -90 193 300 111 0 chr11 77588926 77589016 -71194456 + MIR SINE MIR 53 152 -110 573 246 80 15 chr11 77589888 77590087 -71193385 + MIR SINE MIR 28 239 -23 580 110 12 0 chr11 77590242 77590324 -71193148 + AluJ/FLAM SINE Alu 2 84 -228 446 224 67 0 chr11 77591388 77591522 -71191950 + MIR SINE MIR 81 223 -39 1637 171 20 53 chr11 77592641 77592997 -71190475 + MER2 DNA MER2_type 1 344 0 378 133 17 0 chr11 77593806 77593866 -71189606 + MER96 DNA MER1_type? 112 172 -3 190 380 102 0 chr11 77595087 77595224 -71188248 - MIR SINE MIR -86 176 26 270 242 0 53 chr11 77595413 77595508 -71187964 - MIR SINE MIR -15 247 158 491 256 126 36 chr11 77596393 77596450 -71187022 + MER112 DNA MER1_type 9 59 -201 321 68 0 0 chr11 77596450 77596494 -71186978 + (CA)n Simple_repeat Simple_repeat 2 45 0 491 256 126 36 chr11 77596494 77596659 -71186813 + MER112 DNA MER1_type 59 251 -9 729 281 0 55 chr11 77596939 77597213 -71186259 - MIR SINE MIR 0 262 4 518 279 20 20 chr11 77597215 77597416 -71186056 - L1ME LINE L1 -369 5752 5552 836 145 0 15 chr11 77597929 77598060 -71185412 - FLAM_A SINE Alu -4 129 1 191 256 271 23 chr11 77598385 77598518 -71184954 - MIR SINE MIR -65 197 32 249 33 0 0 chr11 77598610 77598640 -71184832 + (CA)n Simple_repeat Simple_repeat 1 30 0 22 35 0 0 chr11 77600299 77600328 -71183144 + AT_rich Low_complexity Low_complexity 1 29 0 4037 188 37 21 chr11 77600422 77600690 -71182782 - L1ME1 LINE L1 -9 6157 5895 2537 69 0 25 chr11 77600690 77601009 -71182463 - AluY SINE Alu 0 311 1 4037 188 37 21 chr11 77601009 77602174 -71181298 - L1ME1 LINE L1 -271 5895 4547 2615 180 9 21 chr11 77602185 77602676 -71180796 + L1PB4 LINE L1 5633 6096 -70 1648 136 70 31 chr11 77602676 77602963 -71180509 + AluJo SINE Alu 1 298 -14 2615 180 9 21 chr11 77602963 77603029 -71180443 + L1PB4 LINE L1 6096 6161 -5 203 122 0 24 chr11 77603642 77603683 -71179789 + (GGAA)n Simple_repeat Simple_repeat 2 41 0 290 265 29 59 chr11 77603901 77604037 -71179435 + MIR SINE MIR 81 212 -50 193 403 82 13 chr11 77604513 77604672 -71178800 - L2 LINE L2 -180 3092 2923 198 352 19 0 chr11 77604830 77604938 -71178534 - L2 LINE L2 -1393 1921 1812 198 278 0 19 chr11 77606069 77606123 -71177349 + L2 LINE L2 3216 3268 -4 375 296 43 9 chr11 77606157 77606272 -71177200 + L2 LINE L2 3153 3271 -1 303 321 71 9 chr11 77606268 77606380 -71177092 - L3 LINE CR1 -119 1458 1340 * 270 143 36 0 chr11 77606394 77606450 -71177022 - L1MA4 LINE L1 -11 6289 6232 29 0 0 45 chr11 77606539 77606563 -71176909 + AT_rich Low_complexity Low_complexity 1 24 -18 1871 137 10 31 chr11 77606563 77606855 -71176617 - AluJo SINE Alu -26 286 1 29 0 0 45 chr11 77606855 77606874 -71176598 + AT_rich Low_complexity Low_complexity 24 42 0 389 279 73 7 chr11 77606940 77607076 -71176396 + L2 LINE L2 3169 3313 0 7811 17 5 0 chr11 77607290 77608296 -71175176 + L1PA3 LINE L1 5155 6168 0 24 0 0 0 chr11 77608307 77608331 -71175141 + AT_rich Low_complexity Low_complexity 1 24 0 370 241 121 0 chr11 77608646 77608762 -71174710 - L2 LINE L2 -12 3301 3172 288 262 165 73 chr11 77609856 77610462 -71173010 + L2 LINE L2 2650 3311 -2 725 287 11 0 chr11 77610705 77610879 -71172593 + MLT1I LTR MaLR 97 272 -137 243 122 0 85 chr11 77610900 77610982 -71172490 + (TTTAA)n Simple_repeat Simple_repeat 3 77 0 681 140 268 11 chr11 77611439 77611618 -71171854 - MER44D DNA MER2_type -114 495 1 337 280 11 0 chr11 77611626 77611719 -71171753 + MIR SINE MIR 58 151 -57 808 208 19 42 chr11 77611854 77612070 -71171402 - L1ME2 LINE L1 -10 6154 5944 219 114 0 0 chr11 77613117 77613152 -71170320 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 217 238 0 0 chr11 77613154 77613196 -71170276 - L2 LINE L2 -15 3298 3257 1970 148 3 7 chr11 77614145 77614442 -71169030 + AluSx SINE Alu 16 311 -1 2345 103 0 0 chr11 77615062 77615372 -71168100 + AluSx SINE Alu 1 310 -2 26 30 0 0 chr11 77615593 77615626 -71167846 + AT_rich Low_complexity Low_complexity 1 33 0 37145 31 1 0 chr11 77615845 77621370 -71162102 - L1PA4 LINE L1 -3 6152 623 789 31 0 0 chr11 77621370 77621466 -71162006 - L1PA4 LINE L1 -6050 96 1 527 276 27 4 chr11 77621984 77622209 -71161263 - L1ME2 LINE L1 -180 5941 5712 757 228 100 25 chr11 77622490 77622731 -71160741 - MIR SINE MIR 0 262 4 35 54 0 0 chr11 77622750 77622806 -71160666 + AT_rich Low_complexity Low_complexity 1 56 0 228 327 65 19 chr11 77622960 77623067 -71160405 - L2 LINE L2 -213 3059 2948 2182 96 6 66 chr11 77623318 77623651 -71159821 - AluSp SINE Alu 0 313 1 221 255 20 105 chr11 77624388 77624541 -71158931 + MIR SINE MIR 77 216 -46 350 310 135 92 chr11 77624874 77625267 -71158205 - L2 LINE L2 0 3272 2863 213 39 0 0 chr11 77625376 77625402 -71158070 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 997 332 51 46 chr11 77625957 77626741 -71156731 + L1MEd LINE L1 4 791 -5328 1530 152 64 57 chr11 77626746 77627042 -71156430 + AluJb SINE Alu 1 298 -14 293 176 27 14 chr11 77627062 77627136 -71156336 + L1MC5 LINE L1 7775 7849 -112 * 1321 218 10 7 chr11 77627134 77627441 -71156031 + L1ME2 LINE L1 5610 5917 -247 23 33 0 0 chr11 77627528 77627558 -71155914 + AT_rich Low_complexity Low_complexity 1 30 0 309 175 63 0 chr11 77628429 77628492 -71154980 - MER94 DNA DNA -35 99 33 448 325 62 6 chr11 77628522 77628682 -71154790 + MIR SINE MIR 20 188 -74 231 254 48 0 chr11 77629107 77629170 -71154302 + L2 LINE L2 3242 3307 -6 291 157 0 0 chr11 77629282 77629333 -71154139 + T-rich Low_complexity Low_complexity 5 55 0 1713 204 0 22 chr11 77629337 77629650 -71153822 - AluJo SINE Alu -4 308 3 1823 131 81 3 chr11 77629687 77629970 -71153502 - AluJo SINE Alu -7 305 1 2090 108 7 14 chr11 77629983 77630280 -71153192 - AluSx SINE Alu -17 295 1 2378 108 0 20 chr11 77631215 77631557 -71151915 - MER1B DNA MER1_type -1 336 2 226 250 0 0 chr11 77631636 77631684 -71151788 - L2 LINE L2 -221 3051 3004 519 261 145 51 chr11 77631701 77631935 -71151537 - MIR SINE MIR -6 256 1 202 265 82 0 chr11 77632057 77632106 -71151366 - L2 LINE L2 -33 3239 3187 310 286 63 90 chr11 77632210 77632399 -71151073 - L2 LINE L2 -48 3224 3041 334 235 0 59 chr11 77633557 77633642 -71149830 + MIR3 SINE MIR 120 199 -9 1712 154 21 14 chr11 77634628 77634745 -71148727 + AluJo SINE Alu 1 116 -196 192 97 0 0 chr11 77634745 77634776 -71148696 + (CAAAC)n Simple_repeat Simple_repeat 4 34 0 1712 154 21 14 chr11 77634776 77634943 -71148529 + AluJo SINE Alu 116 287 -25 207 0 0 0 chr11 77635156 77635179 -71148293 + (TAAAA)n Simple_repeat Simple_repeat 1 23 0 767 234 123 13 chr11 77635194 77635421 -71148051 - MIR SINE MIR -10 252 1 188 322 24 99 chr11 77635495 77635706 -71147766 + MIR SINE MIR 1 144 -64 479 204 56 0 chr11 77636989 77637097 -71146375 + L2 LINE L2 3200 3313 0 385 306 120 56 chr11 77637692 77638175 -71145297 + L1M2 LINE L1 408 1115 -5734 229 278 111 0 chr11 77638546 77638618 -71144854 - L2 LINE L2 -211 3061 2982 28 0 0 0 chr11 77638709 77638737 -71144735 + AT_rich Low_complexity Low_complexity 1 28 0 341 292 131 73 chr11 77638791 77639248 -71144224 - L2 LINE L2 -1 3271 2733 316 316 0 0 chr11 77639284 77639363 -71144109 - MIR SINE MIR -1 261 183 422 268 0 111 chr11 77639363 77639516 -71143956 - MIR SINE MIR -41 221 86 735 238 90 0 chr11 77639538 77639727 -71143745 + MER63A DNA MER1_type 5 210 0 729 318 94 2 chr11 77639735 77640141 -71143331 + LTR16A LTR ERVL 8 450 0 295 222 56 0 chr11 77640154 77640226 -71143246 - MIR SINE MIR -175 87 12 390 194 0 0 chr11 77640227 77640299 -71143173 + MER69 DNA AcHobo 1 72 -2454 2488 169 50 40 chr11 77640348 77640846 -71142626 + MLT1D LTR MaLR 1 503 -2 285 282 43 34 chr11 77640866 77640983 -71142489 - MLT1-int LTR MaLR -497 874 757 2052 123 14 0 chr11 77641067 77641359 -71142113 - AluJb SINE Alu -16 296 1 1701 218 63 26 chr11 77641432 77641927 -71141545 - L1MC4 LINE L1 -234 7808 7296 1207 222 50 57 chr11 77641984 77642385 -71141087 - L1MC4 LINE L1 -943 7099 6702 683 161 32 45 chr11 77642437 77642592 -71140880 - L1MB7 LINE L1 -19 6165 6013 935 109 0 0 chr11 77642592 77642720 -71140752 + AluSg/x SINE Alu 181 308 -4 469 131 202 10 chr11 77642720 77642819 -71140653 - L1MB7 LINE L1 -150 6034 5917 3325 217 40 10 chr11 77642830 77643732 -71139740 - L1M4 LINE L1 -1744 4402 3474 636 176 37 0 chr11 77643727 77643863 -71139609 - L1MDa LINE L1 -4540 2000 1860 * 243 218 0 0 chr11 77643887 77643942 -71139530 + CT-rich Low_complexity Low_complexity 3 57 0 1610 178 61 14 chr11 77643950 77644243 -71139229 - AluJo SINE Alu -5 307 1 1063 247 73 55 chr11 77644263 77644794 -71138678 - L1MDa LINE L1 -5086 1457 917 191 299 9 47 chr11 77645639 77645746 -71137726 + L2 LINE L2 2826 2928 -344 1736 170 22 0 chr11 77645905 77646209 -71137263 + AluJb SINE Alu 1 310 0 1158 169 189 0 chr11 77646339 77646582 -71136890 + AluJo SINE Alu 1 289 -13 225 0 0 0 chr11 77646590 77646615 -71136857 + (T)n Simple_repeat Simple_repeat 1 25 0 24 32 0 0 chr11 77646755 77646786 -71136686 + AT_rich Low_complexity Low_complexity 1 31 0 254 242 40 97 chr11 77646786 77646910 -71136562 - MIR SINE MIR -133 129 13 22 0 0 0 chr11 77647230 77647252 -71136220 + AT_rich Low_complexity Low_complexity 1 22 0 353 265 120 34 chr11 77647531 77647648 -71135824 - MIR SINE MIR -63 145 19 205 161 0 0 chr11 77647648 77647679 -71135793 + polypyrimidine Low_complexity Low_complexity 3 33 0 4009 171 95 23 chr11 77647679 77649178 -71134294 - L1MB2 LINE L1 0 6171 4547 340 254 112 96 chr11 77649675 77649872 -71133600 + MIR SINE MIR 57 256 -6 1517 166 65 60 chr11 77650116 77650484 -71132988 - MLT1A2 LTR MaLR -4 370 1 354 322 43 66 chr11 77651087 77651298 -71132174 + MIR SINE MIR 1 206 -56 2533 69 0 3 chr11 77651375 77651678 -71131794 - AluSc SINE Alu -7 302 1 3905 167 30 12 chr11 77651798 77653156 -71130316 + L1MB8 LINE L1 4643 6026 -152 387 270 230 0 chr11 77653272 77653424 -71130048 + MIR SINE MIR 48 234 -28 287 260 45 13 chr11 77653451 77653580 -71129892 + MIR SINE MIR 58 188 -61 677 133 44 59 chr11 77654179 77654314 -71129158 + FLAM_A SINE Alu 1 133 0 2463 56 3 13 chr11 77654396 77654700 -71128772 + AluY SINE Alu 1 301 -10 416 141 0 0 chr11 77654800 77654864 -71128608 + MER66A LTR ERV1 405 468 -10 209 244 23 81 chr11 77655897 77655983 -71127489 - MIR SINE MIR -41 221 141 668 299 104 32 chr11 77656065 77656440 -71127032 - L2 LINE L2 -18 3254 2853 317 354 61 6 chr11 77656461 77656642 -71126830 - L2 LINE L2 -653 2661 2471 409 263 263 9 chr11 77656726 77656943 -71126529 - Charlie7 DNA MER1_type -2335 277 6 273 271 209 8 chr11 77656987 77657116 -71126356 + MIR SINE MIR 28 182 -80 1413 130 41 8 chr11 77657243 77657489 -71125983 - L1MB2 LINE L1 -2 6169 5916 3143 154 21 30 chr11 77657738 77658362 -71125110 - L1MB8 LINE L1 -9 6169 5552 600 250 67 67 chr11 77658609 77658937 -71124535 - MARNA DNA Mariner -127 459 132 1950 121 0 17 chr11 77660750 77661047 -71122425 + AluSg SINE Alu 1 292 -18 866 193 19 6 chr11 77661106 77661267 -71122205 + FRAM SINE Alu 1 163 -13 23 33 0 0 chr11 77661419 77661449 -71122023 + AT_rich Low_complexity Low_complexity 1 30 0 396 244 60 127 chr11 77662642 77662941 -71120531 + L3b LINE CR1 1108 1386 -197 21 0 0 0 chr11 77662991 77663012 -71120460 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 77664431 77664459 -71119013 + AT_rich Low_complexity Low_complexity 1 28 0 2352 91 3 0 chr11 77664613 77664910 -71118562 + AluSp SINE Alu 1 298 -15 189 329 71 0 chr11 77665053 77665123 -71118349 + L2 LINE L2 3163 3237 -35 363 250 150 10 chr11 77665918 77666018 -71117454 - MER5B DNA MER1_type 0 178 65 919 176 0 18 chr11 77666020 77666185 -71117287 - FRAM SINE Alu -16 160 1 1122 248 50 29 chr11 77666232 77666759 -71116713 - L1ME LINE L1 -509 5653 5110 530 159 148 7 chr11 77667055 77667274 -71116198 + MLT1H LTR MaLR 274 549 0 27 49 0 0 chr11 77667382 77667423 -71116049 + AT_rich Low_complexity Low_complexity 1 41 0 1787 153 0 7 chr11 77667493 77667775 -71115697 - AluSx SINE Alu -22 290 11 247 331 33 50 chr11 77669537 77669658 -71113814 + MIR SINE MIR 5 123 -139 2443 87 7 0 chr11 77669693 77669993 -71113479 + AluSg SINE Alu 1 302 -8 2306 118 0 0 chr11 77670163 77670467 -71113005 - AluSx SINE Alu -7 305 2 448 168 7 4 chr11 77670474 77670570 -71112902 + MER66B LTR ERV1 405 476 -10 209 244 23 81 chr11 77671603 77671689 -71111783 - MIR SINE MIR -41 221 141 668 299 104 32 chr11 77671771 77672146 -71111326 - L2 LINE L2 -18 3254 2853 317 354 61 6 chr11 77672167 77672348 -71111124 - L2 LINE L2 -653 2661 2471 287 264 209 8 chr11 77672767 77672896 -71110576 + MIR SINE MIR 28 182 -80 1383 135 45 8 chr11 77673023 77673268 -71110204 - L1MB2 LINE L1 -2 6169 5916 3143 154 21 30 chr11 77673517 77674141 -71109331 - L1MB8 LINE L1 -9 6169 5552 576 253 67 67 chr11 77674388 77674716 -71108756 - MARNA DNA Mariner -127 459 132 2262 82 7 7 chr11 77676529 77676823 -71106649 + AluSx SINE Alu 1 294 -18 189 0 0 0 chr11 77676999 77677020 -71106452 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 875 151 65 0 chr11 77677023 77677162 -71106310 - FRAM SINE Alu -30 146 1 1539 169 0 4 chr11 77677949 77678227 -71105245 - L1MB1 LINE L1 -1 6167 5891 30 27 0 0 chr11 77678482 77678519 -71104953 + AT_rich Low_complexity Low_complexity 1 37 0 253 246 16 0 chr11 77678564 77678625 -71104847 - L2 LINE L2 -216 3056 2995 289 262 97 62 chr11 77678805 77678950 -71104522 - MIR SINE MIR -6 256 107 1955 149 0 7 chr11 77679501 77679797 -71103675 + AluJo SINE Alu 1 294 -18 640 280 51 27 chr11 77679805 77680098 -71103374 - L1MB1 LINE L1 -2213 5595 5296 357 283 79 57 chr11 77680202 77680379 -71103093 - L1ME4a LINE L1 -293 5828 5648 201 417 31 0 chr11 77680633 77680729 -71102743 - L3 LINE CR1 -1 1576 1478 33 56 0 0 chr11 77681672 77681726 -71101746 + AT_rich Low_complexity Low_complexity 1 54 0 359 277 49 55 chr11 77681947 77682297 -71101175 + L1M4 LINE L1 1282 1746 -4888 3410 75 59 0 chr11 77682308 77682437 -71101035 + L1PA10 LINE L1 5651 5771 -397 231 61 0 0 chr11 77682437 77682470 -71101002 + (TA)n Simple_repeat Simple_repeat 2 34 0 3410 75 59 0 chr11 77682470 77682818 -71100654 + L1PA10 LINE L1 5771 6156 -12 547 269 63 5 chr11 77683097 77683320 -71100152 - L1ME LINE L1 -346 5775 5540 1045 240 97 59 chr11 77683322 77683487 -71099985 + MLT1G1 LTR MaLR 1 158 -384 1943 178 0 0 chr11 77683487 77683791 -71099681 + AluJb SINE Alu 4 307 -5 1045 240 97 59 chr11 77683791 77684153 -71099319 + MLT1G1 LTR MaLR 158 542 0 198 279 0 16 chr11 77684413 77684474 -71098998 + L2 LINE L2 2329 2388 -926 1025 158 6 17 chr11 77684539 77684716 -71098756 + AluJb SINE Alu 138 312 0 243 0 0 0 chr11 77684849 77684876 -71098596 + (A)n Simple_repeat Simple_repeat 1 27 0 22 70 0 0 chr11 77685331 77685374 -71098098 + AT_rich Low_complexity Low_complexity 1 43 0 319 228 207 7 chr11 77686283 77686428 -71097044 - MER21B LTR ERV1 -361 502 329 1770 194 24 13 chr11 77686551 77686928 -71096544 + MER41B LTR ERV1 163 543 -92 477 63 0 158 chr11 77687729 77687824 -71095648 - MADE1 DNA Mariner 0 80 1 182 294 82 0 chr11 77688147 77688232 -71095240 + MIR SINE MIR 84 175 -87 220 327 0 0 chr11 77688544 77688599 -71094873 - L2 LINE L2 -17 3296 3242 305 319 21 0 chr11 77688843 77688937 -71094535 - MER5A DNA MER1_type -35 154 59 297 350 10 10 chr11 77688959 77689059 -71094413 + MER5A DNA MER1_type 10 109 -80 238 114 0 0 chr11 77689421 77689456 -71094016 - MER53 DNA DNA -152 37 3 2764 140 122 27 chr11 77689502 77689850 -71093622 - MER7C DNA MER2_type -2426 602 182 182 37 37 0 chr11 77689850 77689877 -71093595 + (TGAG)n Simple_repeat Simple_repeat 1 28 0 2764 140 122 27 chr11 77689877 77690078 -71093394 - MER7C DNA MER2_type -2846 182 1 224 207 35 0 chr11 77690195 77690253 -71093219 + (TA)n Simple_repeat Simple_repeat 1 60 0 1960 111 15 4 chr11 77690353 77690623 -71092849 + AluSq SINE Alu 13 285 -28 309 212 129 0 chr11 77690724 77690809 -71092663 + MER96 DNA MER1_type? 37 132 -43 230 136 0 0 chr11 77690815 77690859 -71092613 - L1MB8 LINE L1 -11 6167 6124 32 0 0 0 chr11 77690859 77690891 -71092581 + AT_rich Low_complexity Low_complexity 1 32 0 352 83 0 0 chr11 77690891 77690939 -71092533 - MER66A LTR ERV1 -140 338 291 1997 184 50 15 chr11 77690945 77691406 -71092066 - L1MB8 LINE L1 -40 6138 5662 1020 110 0 0 chr11 77691407 77691543 -71091929 + AluSq/x SINE Alu 1 136 -177 1922 119 52 14 chr11 77691544 77691830 -71091642 + AluSx SINE Alu 3 299 -13 1961 170 30 3 chr11 77691830 77692270 -71091202 - L1MB8 LINE L1 -518 5666 5222 * 3966 217 41 5 chr11 77692269 77693342 -71090130 - L1MB8 LINE L1 -1927 4219 3108 381 250 0 0 chr11 77693408 77693484 -71089988 - MER58A DNA MER1_type -30 77 2 398 178 108 157 chr11 77693494 77693679 -71089793 - MER5B DNA MER1_type -1 177 2 757 232 76 5 chr11 77693717 77693915 -71089557 - MLT1C LTR MaLR -50 417 206 482 201 90 35 chr11 77693925 77694069 -71089403 - MER21B LTR ERV1 -410 453 302 360 0 0 0 chr11 77694299 77694339 -71089133 + (TG)n Simple_repeat Simple_repeat 1 40 0 436 341 67 51 chr11 77694542 77694917 -71088555 - L1MEd LINE L1 -5727 392 12 330 294 61 43 chr11 77694935 77695166 -71088306 - L1ME LINE L1 -298 5823 5589 366 324 66 74 chr11 77695381 77695625 -71087847 - L2 LINE L2 -14 3258 3017 1222 219 34 19 chr11 77695627 77696006 -71087466 - L1ME LINE L1 -1403 4743 4359 1637 241 87 22 chr11 77696332 77696620 -71086852 + L1M4 LINE L1 4700 4968 -1178 1659 125 28 59 chr11 77696620 77696964 -71086508 + AluJo SINE Alu 3 337 0 1637 241 87 22 chr11 77696964 77697252 -71086220 + L1M4 LINE L1 4968 5314 -832 360 89 0 20 chr11 77697324 77697392 -71086080 + L1MB3 LINE L1 6083 6146 -28 253 279 158 71 chr11 77697406 77697729 -71085743 - MLT1K LTR MaLR -61 527 177 347 266 37 9 chr11 77697945 77698054 -71085418 - L2 LINE L2 0 3313 3202 2149 97 3 10 chr11 77698297 77698608 -71084864 - AluSg1 SINE Alu 0 309 1 587 260 69 29 chr11 77699246 77699523 -71083949 - MLT1J LTR MaLR 0 511 224 297 253 91 43 chr11 77699608 77699782 -71083690 - MLT1J LTR MaLR -331 180 2 246 345 26 0 chr11 77699948 77700061 -71083411 - LTR16B LTR ERVL -348 116 1 211 343 49 10 chr11 77700061 77700163 -71083309 + L2 LINE L2 2017 2122 -1192 2140 116 0 10 chr11 77700204 77700507 -71082965 - AluSx SINE Alu -12 300 1 291 268 198 8 chr11 77700581 77700765 -71082707 - MIR SINE MIR -14 248 20 467 216 34 132 chr11 77700899 77701103 -71082369 + MER5A DNA MER1_type 1 184 -5 236 250 0 0 chr11 77701108 77701160 -71082312 + MIR3 SINE MIR 154 205 -3 308 314 69 0 chr11 77701251 77701368 -71082104 + MIR SINE MIR 40 163 -91 261 247 127 57 chr11 77701828 77701986 -71081486 - L2 LINE L2 0 3272 3104 314 311 148 16 chr11 77702078 77702322 -71081150 - L2 LINE L2 -454 2860 2585 1657 255 116 4 chr11 77702594 77703077 -71080395 + MLT1H LTR MaLR 13 549 0 1761 124 96 3 chr11 77703700 77703982 -71079490 - AluSx SINE Alu -3 309 2 1912 241 63 19 chr11 77704263 77704786 -71078686 + MLT1H LTR MaLR 1 546 -3 309 276 118 7 chr11 77704846 77704998 -71078474 + L1MC5 LINE L1 7782 7950 -11 869 241 55 47 chr11 77705014 77705088 -71078384 + L2 LINE L2 2118 2190 -1124 2511 60 0 3 chr11 77705088 77705388 -71078084 - AluY SINE Alu -12 299 1 869 241 55 47 chr11 77705388 77705566 -71077906 + L2 LINE L2 2190 2372 -942 1377 179 77 35 chr11 77705568 77705881 -71077591 + MLT1F LTR MaLR 1 326 -216 237 324 93 61 chr11 77706143 77706390 -71077082 - L2 LINE L2 -39 3233 2979 319 317 191 10 chr11 77706692 77706891 -71076581 + L3 LINE CR1 1334 1568 -9 2670 99 11 0 chr11 77707748 77708120 -71075352 - SVA Other Other -258 1128 753 376 266 111 44 chr11 77708226 77708518 -71074954 + MLT1J LTR MaLR 229 511 0 314 369 0 0 chr11 77709284 77709452 -71074020 + (TGG)n Simple_repeat Simple_repeat 1 168 0 2441 49 10 13 chr11 77709504 77709811 -71073661 + AluY SINE Alu 1 306 -5 273 295 16 8 chr11 77710692 77710814 -71072658 + L1MC1 LINE L1 4487 4609 -1537 5918 136 76 11 chr11 77711004 77711070 -71072402 + L1MC1 LINE L1 5023 5083 -1250 2238 91 0 48 chr11 77711070 77711379 -71072093 - AluSq SINE Alu -19 294 1 5918 136 76 11 chr11 77711379 77712566 -71070906 + L1MC1 LINE L1 5083 6333 0 556 278 148 4 chr11 77712574 77712837 -71070635 + L1MC4a LINE L1 5337 5637 -2171 2281 121 0 0 chr11 77712838 77713145 -71070327 + AluSx SINE Alu 2 308 -4 332 152 76 95 chr11 77713182 77713287 -71070185 - Charlie5 DNA MER1_type 0 2624 2522 225 257 0 29 chr11 77713297 77713367 -71070105 + (CATA)n Simple_repeat Simple_repeat 4 71 0 311 300 0 9 chr11 77713391 77713501 -71069971 - L1ME LINE L1 -328 5793 5685 568 146 0 0 chr11 77713504 77713593 -71069879 - AluJ/FRAM SINE Alu -8 304 216 198 191 0 0 chr11 77713642 77713684 -71069788 + (CA)n Simple_repeat Simple_repeat 1 42 0 465 206 0 0 chr11 77713732 77713834 -71069638 + (TA)n Simple_repeat Simple_repeat 1 102 0 278 276 43 17 chr11 77713876 77713992 -71069480 + L1MC4a LINE L1 5854 5972 -1836 290 232 123 58 chr11 77714122 77714260 -71069212 - L2 LINE L2 -12 3301 3155 1340 161 46 0 chr11 77714279 77714496 -71068976 + AluJo SINE Alu 86 312 0 333 109 0 0 chr11 77714511 77714566 -71068906 + (GGGA)n Simple_repeat Simple_repeat 4 58 0 379 209 19 4 chr11 77714575 77714682 -71068790 + FLAM_A SINE Alu 11 75 -57 36482 49 29 1 chr11 77714682 77720612 -71062860 + L1PA5 LINE L1 21 6153 -1 578 170 66 19 chr11 77720612 77720718 -71062754 + FRAM SINE Alu 56 166 -10 1287 277 104 48 chr11 77720721 77721557 -71061915 - L2 LINE L2 -174 3139 2250 691 266 108 53 chr11 77721760 77722102 -71061370 + L2 LINE L2 2093 2453 -861 374 154 39 0 chr11 77722235 77722313 -71061159 + LTR33 LTR ERVL 1 81 -440 652 260 88 39 chr11 77722921 77723184 -71060288 - L1M4 LINE L1 -2949 3197 2903 4824 166 55 31 chr11 77723184 77723951 -71059521 + Tigger6a DNA MER2_type 1 801 -796 2032 149 0 0 chr11 77723951 77724247 -71059225 - AluSx SINE Alu -16 296 1 4824 166 55 31 chr11 77724247 77724537 -71058935 + Tigger6a DNA MER2_type 801 1083 0 652 260 88 39 chr11 77724537 77724704 -71058768 - L1M4 LINE L1 -3243 2903 2746 23 33 0 0 chr11 77725347 77725377 -71058095 + AT_rich Low_complexity Low_complexity 1 30 0 29 78 0 0 chr11 77726677 77726741 -71056731 + AT_rich Low_complexity Low_complexity 1 64 0 236 247 141 24 chr11 77726933 77727018 -71056454 - L2 LINE L2 -19 3294 3200 549 100 0 0 chr11 77727188 77727268 -71056204 - MADE1 DNA Mariner 0 80 1 2361 77 0 0 chr11 77728293 77728579 -71054893 - AluSc SINE Alu -21 288 3 673 165 29 0 chr11 77729125 77729228 -71054244 - FRAM SINE Alu -74 102 1 250 317 69 41 chr11 77730386 77730531 -71052941 - MIR SINE MIR -85 177 29 422 146 15 39 chr11 77730656 77730786 -71052686 + (TA)n Simple_repeat Simple_repeat 2 128 0 241 178 0 0 chr11 77730791 77730836 -71052636 - L1MC4 LINE L1 -1339 6703 6659 2476 47 7 0 chr11 77731335 77731632 -71051840 - AluY SINE Alu -12 299 1 2354 106 0 6 chr11 77732223 77732535 -71050937 + AluSx SINE Alu 1 310 -2 22 35 0 0 chr11 77732549 77732578 -71050894 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr11 77733163 77733192 -71050280 + AT_rich Low_complexity Low_complexity 1 29 0 2118 179 49 2 chr11 77733239 77733646 -71049826 - MSTB LTR MaLR 0 426 1 2101 123 0 7 chr11 77733847 77734140 -71049332 + AluSq SINE Alu 1 291 -22 21 100 0 0 chr11 77734833 77734903 -71048569 + AT_rich Low_complexity Low_complexity 1 70 0 283 350 17 34 chr11 77735117 77735234 -71048238 + MIR3 SINE MIR 15 129 -79 263 173 227 13 chr11 77735327 77735402 -71048070 + MIR SINE MIR 51 141 -67 791 238 183 27 chr11 77735420 77735748 -71047724 + MLT1J2 LTR MaLR 41 419 -31 237 128 0 0 chr11 77735752 77735799 -71047673 + (T)n Simple_repeat Simple_repeat 1 47 0 258 95 0 0 chr11 77735951 77735993 -71047479 + (A)n Simple_repeat Simple_repeat 1 42 0 32 26 0 0 chr11 77736792 77736831 -71046641 + AT_rich Low_complexity Low_complexity 1 39 0 197 284 15 30 chr11 77737295 77737362 -71046110 + L2 LINE L2 2584 2649 -665 594 306 224 21 chr11 77737367 77737902 -71045570 + L2 LINE L2 987 1630 -1684 28 48 0 0 chr11 77737989 77738031 -71045441 + AT_rich Low_complexity Low_complexity 1 42 0 928 229 86 33 chr11 77738176 77738595 -71044877 - L1MC5 LINE L1 -263 7698 7258 1270 201 21 122 chr11 77738716 77739332 -71044140 - L1MC5 LINE L1 -733 7228 6675 37 52 0 0 chr11 77739371 77739429 -71044043 + AT_rich Low_complexity Low_complexity 1 58 0 200 222 0 0 chr11 77739504 77739549 -71043923 + (TA)n Simple_repeat Simple_repeat 1 45 0 225 197 189 79 chr11 77739604 77739731 -71043741 - L1MC4a LINE L1 -1451 6357 6217 2395 142 6 90 chr11 77740128 77740279 -71043193 - L1MB8 LINE L1 -3 6175 6013 2223 125 0 0 chr11 77740279 77740583 -71042889 + AluSq SINE Alu 1 304 -9 2395 142 6 90 chr11 77740583 77740952 -71042520 - L1MB8 LINE L1 -165 6013 5699 863 188 7 0 chr11 77741707 77741851 -71041621 - FRAM SINE Alu -31 145 1 445 217 51 58 chr11 77742061 77742199 -71041273 + L2 LINE L2 3176 3312 -1 505 300 51 33 chr11 77742323 77742669 -71040803 - L1MB8 LINE L1 -743 5403 5074 2336 107 0 3 chr11 77742669 77742977 -71040495 + AluSg1 SINE Alu 2 308 -1 505 300 51 33 chr11 77742977 77743060 -71040412 - L1MB8 LINE L1 -1072 5074 4994 1824 222 67 7 chr11 77743230 77743674 -71039798 - L1MD2 LINE L1 -215 6144 5673 1131 302 47 10 chr11 77744019 77744558 -71038914 - L1MB3 LINE L1 -338 5845 5256 856 288 50 11 chr11 77744634 77744912 -71038560 - L1MC/D LINE L1 -2030 5778 5490 2603 179 15 44 chr11 77745273 77745793 -71037679 + MLT1D LTR MaLR 1 505 0 2188 109 0 7 chr11 77745901 77746195 -71037277 - AluSg SINE Alu -18 292 1 268 319 30 6 chr11 77746196 77746362 -71037110 - L1ME3A LINE L1 -222 5948 5779 374 309 48 11 chr11 77746521 77746709 -71036763 + L1M4 LINE L1 1 195 -6347 1727 144 4 7 chr11 77746710 77746987 -71036485 - AluSx SINE Alu -12 300 25 1116 164 0 0 chr11 77747016 77747193 -71036279 + AluSq SINE Alu 136 312 -1 1681 239 14 98 chr11 77747193 77747625 -71035847 + L1M4 LINE L1 658 1023 -5519 1913 161 0 0 chr11 77747625 77747934 -71035538 - AluSx SINE Alu 0 309 1 1681 239 14 98 chr11 77747934 77748133 -71035339 + L1M4 LINE L1 1023 1237 -5305 1569 76 0 5 chr11 77748135 77748333 -71035139 + AluSc SINE Alu 1 197 -112 400 125 0 0 chr11 77748334 77748398 -71035074 + AluSc SINE Alu 239 302 -7 670 249 42 5 chr11 77748402 77748615 -71034857 + L1M4 LINE L1 1231 1451 -5195 273 296 14 16 chr11 77748630 77748756 -71034716 - L1ME3A LINE L1 -355 5766 5639 272 261 171 11 chr11 77748756 77748844 -71034628 - MER5B DNA MER1_type -12 166 65 1008 166 0 12 chr11 77748846 77749009 -71034463 - FRAM SINE Alu -17 159 1 1224 260 42 21 chr11 77749057 77749630 -71033842 - L1ME3A LINE L1 -509 5653 5061 241 207 17 17 chr11 77749669 77749727 -71033745 + MLT1F LTR MaLR 26 83 -459 584 169 242 14 chr11 77749877 77750096 -71033376 + MLT1F LTR MaLR 274 542 0 282 271 68 41 chr11 77750231 77750311 -71033161 - L1ME3A LINE L1 -1191 4955 4879 1776 157 7 17 chr11 77750311 77750610 -71032862 - AluSx SINE Alu -16 296 1 282 271 68 41 chr11 77750610 77750750 -71032722 - L1ME3A LINE L1 -1267 4879 4729 1399 191 137 0 chr11 77750880 77751179 -71032293 + MER58B DNA MER1_type 2 341 0 752 31 0 10 chr11 77751715 77751811 -71031661 + (TTCC)n Simple_repeat Simple_repeat 3 97 0 2206 94 11 0 chr11 77751811 77752097 -71031375 - AluY SINE Alu -20 291 3 661 196 0 0 chr11 77752141 77752253 -71031219 - MER58A DNA MER1_type 0 113 2 375 339 54 0 chr11 77752470 77752694 -71030778 - L1ME3A LINE L1 -1806 4340 4105 48 0 0 0 chr11 77752823 77752871 -71030601 + AT_rich Low_complexity Low_complexity 1 48 0 30 0 0 0 chr11 77752992 77753022 -71030450 + AT_rich Low_complexity Low_complexity 1 30 0 201 74 0 0 chr11 77753429 77753456 -71030016 + (T)n Simple_repeat Simple_repeat 1 27 0 329 650 0 0 chr11 77753472 77753635 -71029837 + T-rich Low_complexity Low_complexity 1 163 0 2404 96 0 0 chr11 77753654 77753966 -71029506 - AluSx SINE Alu 0 312 1 1294 258 50 78 chr11 77754063 77754230 -71029242 + L1ME3A LINE L1 4500 4670 -1476 2237 103 3 6 chr11 77754230 77754542 -71028930 + AluSx SINE Alu 1 311 -1 1294 258 50 78 chr11 77754542 77754941 -71028531 + L1ME3A LINE L1 4670 5039 -1107 1831 161 38 0 chr11 77754941 77755232 -71028240 + AluJb SINE Alu 1 302 -10 1294 258 50 78 chr11 77755232 77755468 -71028004 + L1ME3A LINE L1 5039 5280 -866 371 243 36 32 chr11 77755444 77755476 -71027996 + L1P1 LINE L1 5257 5287 -868 * 1814 166 0 17 chr11 77755476 77755778 -71027694 + AluJb SINE Alu 4 300 -12 371 243 36 32 chr11 77755778 77755950 -71027522 + L1P1 LINE L1 5287 5461 -694 889 157 0 0 chr11 77755965 77756112 -71027360 - AluSg/x SINE Alu -3 307 161 1082 233 114 30 chr11 77756130 77756480 -71026992 + L1ME3A LINE L1 5477 5857 -313 2064 122 46 27 chr11 77756480 77756848 -71026624 + THE1C LTR MaLR 1 375 0 1082 233 114 30 chr11 77756848 77756862 -71026610 + L1ME3A LINE L1 5857 5868 -302 658 279 106 18 chr11 77757943 77758169 -71025303 - MIR SINE MIR -12 250 5 283 116 0 0 chr11 77758328 77758371 -71025101 - L1MB1 LINE L1 -48 6120 6078 1835 148 3 18 chr11 77758548 77758831 -71024641 + AluJb SINE Alu 1 279 -33 655 178 67 102 chr11 77759124 77759349 -71024123 - L1MC2 LINE L1 -402 5942 5726 225 285 208 14 chr11 77759386 77759530 -71023942 + HAL1 LINE L1 1 172 -2335 1526 120 37 0 chr11 77759623 77759864 -71023608 + L1MB2 LINE L1 5821 6070 -101 257 208 14 0 chr11 77759979 77760051 -71023421 + CT-rich Low_complexity Low_complexity 3 75 0 379 291 37 82 chr11 77760297 77760565 -71022907 - HAL1 LINE L1 -1362 1145 890 403 162 0 0 chr11 77760596 77760664 -71022808 - L1MB1 LINE L1 -184 5987 5920 316 283 58 66 chr11 77760873 77761131 -71022341 + HAL1 LINE L1 2251 2506 -1 2348 48 3 7 chr11 77761383 77761678 -71021794 - AluY SINE Alu -17 294 1 584 297 31 26 chr11 77761758 77761953 -71021519 + MIR SINE MIR 3 198 -64 28 0 0 0 chr11 77763977 77764005 -71019467 + AT_rich Low_complexity Low_complexity 1 28 0 2068 114 3 13 chr11 77764219 77764526 -71018946 - AluSc SINE Alu -5 304 1 928 242 106 55 chr11 77764832 77765229 -71018243 - L1MC4a LINE L1 -1875 5933 5517 731 96 48 24 chr11 77765275 77765386 -71018086 - MER50 LTR ERV1 -121 613 497 1528 170 3 61 chr11 77765386 77765697 -71017775 - AluJo SINE Alu -1 311 19 731 96 48 24 chr11 77765697 77765710 -71017762 - MER50 LTR ERV1 -237 497 486 23 0 0 0 chr11 77765715 77765738 -71017734 + AT_rich Low_complexity Low_complexity 1 23 0 1567 226 37 67 chr11 77765752 77765912 -71017560 - L1MC5 LINE L1 -103 7858 7695 2049 142 0 3 chr11 77765912 77766208 -71017264 + AluJb SINE Alu 1 295 -17 1567 226 37 67 chr11 77766208 77766674 -71016798 - L1MC5 LINE L1 -266 7695 7251 1740 157 10 39 chr11 77766783 77767088 -71016384 - AluJb SINE Alu -16 296 1 1801 175 69 11 chr11 77767604 77767854 -71015618 - MER82 DNA MER2_type -262 391 114 2202 116 0 10 chr11 77767854 77768156 -71015316 + AluSx SINE Alu 1 299 -13 1801 175 69 11 chr11 77768156 77768254 -71015218 - MER82 DNA MER2_type -539 114 23 1441 147 46 8 chr11 77768361 77768599 -71014873 + AluSx SINE Alu 1 247 -65 339 289 154 0 chr11 77768723 77768879 -71014593 + L3 LINE CR1 1050 1229 -348 323 320 98 10 chr11 77768891 77769094 -71014378 - L2 LINE L2 0 3272 3052 571 200 121 24 chr11 77769106 77769271 -71014201 + L3 LINE CR1 1311 1491 -86 254 272 58 12 chr11 77769282 77769455 -71014017 - L1M4 LINE L1 -3856 2788 2608 1516 148 17 0 chr11 77769702 77769939 -71013533 + AluSg SINE Alu 1 241 -69 552 234 141 16 chr11 77770039 77770223 -71013249 + MIR SINE MIR 56 262 0 620 189 209 5 chr11 77770284 77770485 -71012987 - LTR50 LTR ERVL -5 790 549 679 186 181 40 chr11 77770521 77770769 -71012703 - LTR50 LTR ERVL -497 298 16 1854 179 0 0 chr11 77771242 77771533 -71011939 - AluJb SINE Alu -18 294 4 840 213 12 0 chr11 77771538 77771698 -71011774 - MLT1G1 LTR MaLR -433 162 1 579 254 109 23 chr11 77771700 77772003 -71011469 + L1ME4a LINE L1 5540 5868 -253 3658 76 62 0 chr11 77772196 77772550 -71010922 - L1PA10 LINE L1 -4 6164 5771 231 61 0 0 chr11 77772550 77772583 -71010889 + (TA)n Simple_repeat Simple_repeat 2 34 0 3658 76 62 0 chr11 77772583 77772712 -71010760 - L1PA10 LINE L1 -397 5771 5651 474 292 90 62 chr11 77772723 77773284 -71010188 - L1M4 LINE L1 -4888 1746 1060 33 56 0 0 chr11 77773294 77773348 -71010124 + AT_rich Low_complexity Low_complexity 1 54 0 191 417 31 0 chr11 77774290 77774386 -71009086 + L3 LINE CR1 1478 1576 -1 237 272 83 59 chr11 77774648 77774817 -71008655 + L1ME LINE L1 5656 5828 -293 807 279 52 17 chr11 77774921 77775211 -71008261 + L1MB1 LINE L1 5296 5595 -2213 1989 149 0 3 chr11 77775219 77775515 -71007957 - AluJo SINE Alu -17 295 1 282 262 97 62 chr11 77776066 77776211 -71007261 + MIR SINE MIR 107 256 -6 251 246 16 0 chr11 77776391 77776452 -71007020 + L2 LINE L2 2995 3056 -216 30 27 0 0 chr11 77776497 77776534 -71006938 + AT_rich Low_complexity Low_complexity 1 37 0 1676 169 0 4 chr11 77776789 77777067 -71006405 + L1MB1 LINE L1 5891 6167 -1 871 151 65 0 chr11 77777854 77777993 -71005479 + FRAM SINE Alu 1 146 -30 189 0 0 0 chr11 77777996 77778017 -71005455 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 2504 48 0 0 chr11 77778192 77778485 -71004987 - AluY SINE Alu -18 293 1 326 229 271 0 chr11 77778501 77778597 -71004875 + MER5A DNA MER1_type 67 188 -1 361 291 35 40 chr11 77778618 77778817 -71004655 + L2 LINE L2 3116 3313 0 24 32 0 0 chr11 77779662 77779693 -71003779 + GC_rich Low_complexity Low_complexity 1 31 0 190 291 110 31 chr11 77779738 77779865 -71003607 - MIR3 SINE MIR -8 200 64 1086 291 44 17 chr11 77780632 77781038 -71002434 + LTR16B LTR ERVL 34 450 -14 210 304 25 51 chr11 77781846 77781925 -71001547 - MIR SINE MIR -96 112 36 358 273 108 0 chr11 77782348 77782487 -71000985 - MER103 DNA DNA -10 156 3 331 278 37 86 chr11 77782541 77782627 -71000845 + MIR3 SINE MIR 12 88 -120 1912 134 7 0 chr11 77782627 77782904 -71000568 - AluSg SINE Alu -31 279 1 331 278 37 86 chr11 77782904 77782979 -71000493 + MIR3 SINE MIR 88 165 -43 610 193 9 9 chr11 77783046 77783160 -71000312 + MER45A DNA AcHobo 46 159 -19 409 303 43 0 chr11 77783236 77783369 -71000103 - MIR SINE MIR -70 138 1 183 176 0 0 chr11 77783369 77783396 -71000076 + MIR3 SINE MIR 182 208 0 416 239 292 23 chr11 77783526 77783731 -70999741 + MIR SINE MIR 7 262 0 21 0 0 0 chr11 77783826 77783847 -70999625 + AT_rich Low_complexity Low_complexity 1 21 0 964 300 64 7 chr11 77785194 77785491 -70997981 - LTR16A LTR ERVL -7 443 130 248 304 0 0 chr11 77786737 77786792 -70996680 + L2 LINE L2 2989 3043 -229 553 276 77 28 chr11 77786792 77786973 -70996499 + MER91B DNA MER1_type 1 190 0 319 297 64 85 chr11 77786977 77787213 -70996259 + L2 LINE L2 3040 3270 -2 367 293 88 33 chr11 77787289 77787470 -70996002 + MIR SINE MIR 47 237 -25 234 91 0 0 chr11 77788046 77788079 -70995393 + (A)n Simple_repeat Simple_repeat 1 33 0 24 67 0 0 chr11 77789448 77789493 -70993979 + AT_rich Low_complexity Low_complexity 1 45 0 346 288 30 8 chr11 77789783 77789915 -70993557 - MIR SINE MIR -57 205 71 363 288 178 38 chr11 77789963 77790227 -70993245 + MLT1H LTR MaLR 245 545 -4 1960 163 3 0 chr11 77790474 77790781 -70992691 - AluJb SINE Alu -4 308 1 986 109 0 7 chr11 77790781 77790918 -70992554 - AluJb SINE Alu -176 136 1 717 247 132 0 chr11 77790933 77791123 -70992349 + MIR SINE MIR 5 219 -43 225 398 155 12 chr11 77791475 77791636 -70991836 - L2 LINE L2 -2 3270 3087 2227 110 156 8 chr11 77791704 77792076 -70991396 + MSTA LTR MaLR 1 427 -1 188 339 32 16 chr11 77792134 77792196 -70991276 - L2 LINE L2 -229 3043 2981 298 364 46 46 chr11 77792486 77792637 -70990835 + MIR3 SINE MIR 6 156 -52 911 137 0 0 chr11 77793124 77793255 -70990217 - FLAM_C SINE Alu -12 131 1 23 0 0 0 chr11 77793635 77793658 -70989814 + AT_rich Low_complexity Low_complexity 1 23 0 825 211 35 17 chr11 77793662 77794077 -70989395 + L1MC5 LINE L1 7459 7924 -37 29 0 0 0 chr11 77794180 77794209 -70989263 + AT_rich Low_complexity Low_complexity 1 29 0 2159 136 0 0 chr11 77794210 77794504 -70988968 - AluSx SINE Alu -18 294 1 418 228 31 74 chr11 77794609 77794771 -70988701 - MLT1L LTR MaLR -7 608 454 186 43 0 0 chr11 77795217 77795240 -70988232 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2088 96 0 21 chr11 77795269 77795551 -70987921 - AluSx SINE Alu -36 276 1 1908 169 3 0 chr11 77795804 77796111 -70987361 + AluJo SINE Alu 1 308 -4 27 81 0 0 chr11 77797264 77797326 -70986146 + AT_rich Low_complexity Low_complexity 1 62 0 2104 103 4 4 chr11 77798368 77798649 -70984823 - AluSx SINE Alu -31 281 1 314 369 0 0 chr11 77798701 77798869 -70984603 + (CCA)n Simple_repeat Simple_repeat 1 168 0 478 262 104 36 chr11 77799634 77799925 -70983547 - MLT1J LTR MaLR 0 511 229 4785 69 10 11 chr11 77800036 77800661 -70982811 + SVA Other Other 759 1382 -4 559 273 31 12 chr11 77800943 77801104 -70982368 - L1MEd LINE L1 -5659 460 297 523 301 27 6 chr11 77801159 77801342 -70982130 - L1MEd LINE L1 -5914 205 19 224 271 47 47 chr11 77801401 77801486 -70981986 + L3 LINE CR1 1486 1570 -7 1983 120 0 29 chr11 77802002 77802318 -70981154 - AluSx SINE Alu -2 310 4 449 264 92 50 chr11 77802562 77802823 -70980649 + LTR16A1 LTR ERVL 80 351 -106 * 800 233 90 63 chr11 77802819 77803142 -70980330 + LTR16A1 LTR ERVL 82 418 -39 1974 144 7 0 chr11 77803142 77803434 -70980038 + AluJo SINE Alu 1 294 -18 800 233 90 63 chr11 77803434 77803475 -70979997 + LTR16A1 LTR ERVL 418 456 -1 388 222 9 83 chr11 77803652 77803760 -70979712 + MIR SINE MIR 156 255 -7 384 211 9 46 chr11 77803754 77803863 -70979609 + L2 LINE L2 3207 3311 -2 * 214 193 70 0 chr11 77804034 77804091 -70979381 + (CAGAGA)n Simple_repeat Simple_repeat 5 65 0 234 125 0 0 chr11 77804091 77804139 -70979333 + (TA)n Simple_repeat Simple_repeat 2 49 0 2085 107 3 10 chr11 77804140 77804429 -70979043 - AluSq SINE Alu -26 287 1 228 276 0 0 chr11 77804634 77804692 -70978780 + MLT1K LTR MaLR 514 571 -17 1215 71 11 38 chr11 77806278 77806462 -70977010 - AluSq SINE Alu -88 225 47 1794 154 34 0 chr11 77806521 77806636 -70976836 + AluSx SINE Alu 8 118 -194 225 0 0 0 chr11 77806636 77806661 -70976811 + (TA)n Simple_repeat Simple_repeat 2 26 0 1794 154 34 0 chr11 77806661 77806838 -70976634 + AluSx SINE Alu 118 310 -2 660 252 7 7 chr11 77806946 77807093 -70976379 + MER69 DNA AcHobo 2 148 -2378 365 130 145 14 chr11 77807087 77807156 -70976316 + MER69 DNA AcHobo 2449 2526 0 * 2736 113 6 3 chr11 77808180 77808543 -70974929 + THE1B LTR MaLR 1 364 0 400 289 33 25 chr11 77808573 77808694 -70974778 + L2 LINE L2 3179 3300 -13 465 301 33 20 chr11 77808756 77808909 -70974563 - MIR3 SINE MIR -9 199 45 2133 113 3 7 chr11 77809030 77809331 -70974141 + AluSx SINE Alu 1 300 -12 22 56 0 0 chr11 77809723 77809759 -70973713 + AT_rich Low_complexity Low_complexity 1 36 0 1488 184 14 14 chr11 77809924 77810202 -70973270 - MER7A DNA MER2_type -69 277 2 211 244 39 90 chr11 77810358 77810436 -70973036 + MIR SINE MIR 69 142 -66 288 0 0 0 chr11 77810821 77810853 -70972619 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 353 162 15 0 chr11 77810857 77810925 -70972547 + L1MEc LINE L1 2092 2160 -4236 399 277 63 50 chr11 77811191 77811350 -70972122 - MIR3 SINE MIR -12 196 36 275 286 202 0 chr11 77811749 77811868 -70971604 + MIR SINE MIR 49 191 -71 1527 189 3 49 chr11 77811912 77812218 -70971254 - AluJo SINE Alu -20 292 1 451 261 0 9 chr11 77812242 77812353 -70971119 - MIR SINE MIR -63 199 90 2435 93 0 0 chr11 77812719 77813019 -70970453 - AluSp SINE Alu -13 300 1 212 322 67 0 chr11 77813977 77814067 -70969405 + L2 LINE L2 3187 3282 -31 513 84 0 0 chr11 77814076 77814147 -70969325 + (TGGA)n Simple_repeat Simple_repeat 1 71 0 204 179 0 26 chr11 77814149 77814188 -70969284 + L3 LINE CR1 1525 1562 -15 540 267 21 31 chr11 77814273 77814464 -70969008 - MIR3 SINE MIR 0 208 20 230 81 27 0 chr11 77814471 77814508 -70968964 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 207 200 0 0 chr11 77814804 77814849 -70968623 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 1043 167 32 28 chr11 77815279 77815495 -70967977 - L1MB4 LINE L1 -1 6179 5963 469 269 70 35 chr11 77815497 77815668 -70967804 - MIR SINE MIR -65 197 21 278 337 154 9 chr11 77815870 77816214 -70967258 - L2 LINE L2 -16 3256 2863 194 330 8 34 chr11 77816603 77816721 -70966751 + L2 LINE L2 2351 2465 -849 376 232 21 11 chr11 77816721 77816816 -70966656 - MER115 DNA AcHobo -22 671 576 2049 100 7 7 chr11 77816822 77817102 -70966370 + AluSc SINE Alu 1 280 -29 351 246 17 91 chr11 77817193 77817218 -70966254 - L1MA10 LINE L1 0 6334 6310 1298 175 13 84 chr11 77817218 77817526 -70965946 - L1ME2 LINE L1 -9 6155 5870 714 243 0 7 chr11 77817539 77817683 -70965789 + AluJb SINE Alu 133 275 -37 2637 58 0 0 chr11 77817973 77818284 -70965188 + AluY SINE Alu 1 311 0 2298 86 0 20 chr11 77818971 77819273 -70964199 + AluSx SINE Alu 1 296 -16 261 0 0 0 chr11 77820386 77820415 -70963057 + (GA)n Simple_repeat Simple_repeat 1 29 0 797 143 291 0 chr11 77820660 77820870 -70962602 - L1MA6 LINE L1 -4 6296 6026 789 120 0 34 chr11 77822673 77822790 -70960682 + FLAM_C SINE Alu 2 114 -19 256 319 149 0 chr11 77823263 77823398 -70960074 + MIR SINE MIR 23 183 -64 502 257 62 34 chr11 77823594 77823773 -70959699 + L2 LINE L2 2271 2454 -860 195 100 0 0 chr11 77823796 77823826 -70959646 + (CAG)n Simple_repeat Simple_repeat 2 31 0 245 206 73 15 chr11 77824039 77824107 -70959365 + MLT1K LTR MaLR 517 588 0 716 246 140 39 chr11 77824169 77824454 -70959018 - MLT1I LTR MaLR -95 314 1 242 284 15 0 chr11 77824455 77824522 -70958950 - L2 LINE L2 -19 3253 3186 293 284 0 11 chr11 77824625 77824720 -70958752 - MER102a DNA MER1_type -1 329 236 1701 90 0 5 chr11 77824743 77824954 -70958518 + AluSq SINE Alu 1 210 -103 559 185 49 103 chr11 77825033 77825217 -70958255 - MER102a DNA MER1_type -147 183 10 349 333 41 0 chr11 77825227 77825374 -70958098 + L3 LINE CR1 1010 1162 -415 325 333 11 0 chr11 77825419 77825512 -70957960 - L2 LINE L2 -36 3236 3143 317 281 192 20 chr11 77825566 77825712 -70957760 - MIR SINE MIR 0 262 92 243 361 0 0 chr11 77825845 77825928 -70957544 + L3 LINE CR1 1437 1519 -58 373 287 98 24 chr11 77826192 77826356 -70957116 + MIR3 SINE MIR 8 183 -25 1202 143 46 81 chr11 77826493 77826689 -70956783 + MER33 DNA MER1_type 29 212 -2373 922 167 0 0 chr11 77826689 77826821 -70956651 + FLAM_C SINE Alu 1 132 -1 1202 143 46 81 chr11 77826821 77826931 -70956541 + MER33 DNA MER1_type 212 324 0 282 255 255 11 chr11 77826937 77827031 -70956441 - MIR3 SINE MIR -77 131 15 2585 190 61 4 chr11 77827040 77827545 -70955927 + MLT1F LTR MaLR 1 534 -8 2554 47 3 0 chr11 77828736 77829034 -70954438 + AluY SINE Alu 1 299 -12 331 283 68 109 chr11 77829381 77829749 -70953723 - L1M2 LINE L1 -5724 1125 773 526 230 43 62 chr11 77829985 77830194 -70953278 - L2 LINE L2 -5 3308 3104 882 211 33 69 chr11 77830230 77830505 -70952967 - LTR16A LTR ERVL -35 415 151 225 0 0 0 chr11 77830506 77830531 -70952941 + (T)n Simple_repeat Simple_repeat 1 25 0 866 237 6 90 chr11 77830753 77831074 -70952398 + L1M4 LINE L1 3711 4004 -2142 1513 127 9 0 chr11 77831122 77831343 -70952129 - L1MD1 LINE L1 -2 6240 6018 4287 149 38 1 chr11 77831370 77832281 -70951191 - L1MD1 LINE L1 -312 5930 4982 1384 39 0 0 chr11 77832281 77832436 -70951036 - L1PA3 LINE L1 0 6155 6001 851 39 0 0 chr11 77832437 77832540 -70950932 + L1P LINE L1 5127 5229 -917 776 242 6 0 chr11 77832582 77832760 -70950712 - L1MD1 LINE L1 -1194 4952 4774 6714 101 22 1 chr11 77832760 77833664 -70949808 + Tigger4(Zombi) DNA MER2_type 1 923 -1808 * 7567 96 41 6 chr11 77833661 77833884 -70949588 + Tigger4(Zombi) DNA MER2_type 1629 1843 -888 198 118 0 0 chr11 77833884 77833918 -70949554 + (ATG)n Simple_repeat Simple_repeat 1 34 0 7567 96 41 6 chr11 77833918 77834759 -70948713 + Tigger4(Zombi) DNA MER2_type 1843 2731 0 4263 204 36 52 chr11 77834766 77834916 -70948556 - L1MD1 LINE L1 -1380 4766 4615 2142 85 42 14 chr11 77834916 77835199 -70948273 + AluY SINE Alu 1 291 -20 4263 204 36 52 chr11 77835199 77836205 -70947267 - L1MD1 LINE L1 -1531 4615 3628 * 5843 84 6 6 chr11 77836203 77836980 -70946492 - L1PA11 LINE L1 -7 6167 5391 450 162 0 0 chr11 77836993 77837067 -70946405 - FLAM SINE Alu -10 133 60 1851 232 20 0 chr11 77837069 77837509 -70945963 - L1MD1 LINE L1 -3447 2699 2251 710 171 0 0 chr11 77837509 77837614 -70945858 + Tigger3(Golem) DNA MER2_type 1 105 -2924 * 2451 135 141 10 chr11 77837608 77838097 -70945375 + Tigger3(Golem) DNA MER2_type 2277 2829 -200 1066 239 45 10 chr11 77838118 77838407 -70945065 + L1ME2 LINE L1 5531 5829 -335 184 303 45 0 chr11 77838456 77838522 -70944950 - MIR SINE MIR -48 214 146 1554 260 119 72 chr11 77838599 77839280 -70944192 - MER21B LTR ERV1 -145 718 6 23 0 0 0 chr11 77839289 77839312 -70944160 + AT_rich Low_complexity Low_complexity 1 23 0 2305 108 0 13 chr11 77839321 77839628 -70943844 + AluSx SINE Alu 1 303 -9 662 225 0 0 chr11 77839634 77839745 -70943727 - FLAM_C SINE Alu -31 112 2 391 274 137 14 chr11 77839749 77839895 -70943577 - MIR SINE MIR -98 164 1 607 223 38 19 chr11 77840554 77840711 -70942761 - MLT1J LTR MaLR -313 198 39 2510 59 10 0 chr11 77841336 77841643 -70941829 + AluY SINE Alu 2 311 0 345 288 61 38 chr11 77841854 77841986 -70941486 + L2 LINE L2 3137 3271 -1 615 301 49 9 chr11 77842342 77842568 -70940904 - MIR SINE MIR 0 262 28 284 322 0 22 chr11 77842580 77842670 -70940802 + L2 LINE L2 3185 3272 0 220 194 0 0 chr11 77842796 77842832 -70940640 + (TCCA)n Simple_repeat Simple_repeat 1 36 0 198 353 72 58 chr11 77842911 77843050 -70940422 - L2 LINE L2 -128 3144 3004 1733 189 0 7 chr11 77844030 77844321 -70939151 + AluJo SINE Alu 1 289 -23 405 252 72 0 chr11 77844717 77844828 -70938644 + Zaphod DNA AcHobo 134 252 -3779 486 179 26 34 chr11 77844834 77844951 -70938521 - L1ME2 LINE L1 -15 6149 6034 1469 232 77 11 chr11 77844963 77845342 -70938130 + Zaphod DNA AcHobo 256 659 -3372 1006 196 37 99 chr11 77845334 77845716 -70937756 + Zaphod DNA AcHobo 3281 3638 -393 * 277 74 93 56 chr11 77845783 77845837 -70937635 + Zaphod DNA AcHobo 3795 3850 -181 19584 129 42 5 chr11 77845842 77848809 -70934663 + L1M1 LINE L1 22 3097 -4468 2186 110 7 3 chr11 77848809 77849118 -70934354 + AluY SINE Alu 1 310 -1 345 288 61 38 chr11 77849329 77849461 -70934011 + L2 LINE L2 3137 3271 -1 626 305 49 9 chr11 77849817 77850043 -70933429 - MIR SINE MIR 0 262 28 284 322 0 22 chr11 77850055 77850145 -70933327 + L2 LINE L2 3185 3272 0 220 194 0 0 chr11 77850271 77850307 -70933165 + (TCCA)n Simple_repeat Simple_repeat 1 36 0 198 353 72 58 chr11 77850386 77850525 -70932947 - L2 LINE L2 -128 3144 3004 1733 189 0 7 chr11 77851505 77851796 -70931676 + AluJo SINE Alu 1 289 -23 632 325 21 17 chr11 77852141 77852375 -70931097 - L2 LINE L2 -462 2852 2618 1702 166 0 28 chr11 77852377 77852666 -70930806 + AluJb SINE Alu 1 281 -31 1986 164 0 0 chr11 77852769 77853081 -70930391 - AluJo SINE Alu 0 312 1 1769 152 0 51 chr11 77853168 77853484 -70929988 + AluJo SINE Alu 1 300 -12 415 250 95 9 chr11 77854126 77854242 -70929230 + MER96 DNA MER1_type? 7 132 -43 248 140 20 0 chr11 77854242 77854292 -70929180 - L1MB8 LINE L1 -4 6174 6124 32 0 0 0 chr11 77854292 77854324 -70929148 + AT_rich Low_complexity Low_complexity 1 32 0 371 83 0 0 chr11 77854324 77854372 -70929100 - MER66A LTR ERV1 -140 338 291 2239 186 48 15 chr11 77854378 77854840 -70928632 - L1MB8 LINE L1 -40 6138 5662 1016 110 0 0 chr11 77854841 77854977 -70928495 + AluSq/x SINE Alu 1 136 -176 1916 119 52 14 chr11 77854978 77855264 -70928208 + AluSx SINE Alu 3 299 -13 2131 170 47 13 chr11 77855264 77855714 -70927758 - L1MB8 LINE L1 -518 5666 5208 * 4454 217 41 5 chr11 77855703 77856776 -70926696 - L1MB8 LINE L1 -1927 4219 3108 411 250 0 0 chr11 77856842 77856918 -70926554 - MER58A DNA MER1_type -30 77 2 398 178 108 157 chr11 77856928 77857113 -70926359 - MER5B DNA MER1_type -1 177 2 839 212 81 10 chr11 77857151 77857349 -70926123 - MLT1C LTR MaLR -50 417 206 530 194 90 35 chr11 77857359 77857503 -70925969 - MER21B LTR ERV1 -410 453 302 360 0 0 0 chr11 77857733 77857773 -70925699 + (TG)n Simple_repeat Simple_repeat 1 40 0 229 331 63 53 chr11 77857976 77858275 -70925197 - L1MEd LINE L1 -5727 392 91 316 294 61 43 chr11 77858369 77858600 -70924872 - L1ME LINE L1 -298 5823 5589 342 324 66 74 chr11 77858815 77859059 -70924413 - L2 LINE L2 -14 3258 3017 1397 207 39 24 chr11 77859059 77859440 -70924032 - L1ME LINE L1 -1401 4745 4359 1910 241 73 20 chr11 77859766 77860054 -70923418 + L1M4 LINE L1 4700 4971 -1175 1644 113 28 60 chr11 77860054 77860336 -70923136 + AluJo SINE Alu 3 275 -37 360 0 73 0 chr11 77860343 77860398 -70923074 + (TAAAA)n Simple_repeat Simple_repeat 1 59 0 1910 241 73 20 chr11 77860398 77860691 -70922781 + L1M4 LINE L1 4976 5320 -826 385 89 0 20 chr11 77860759 77860827 -70922645 + L1MB3 LINE L1 6083 6146 -28 356 279 158 71 chr11 77860841 77861164 -70922308 - MLT1K LTR MaLR -61 527 177 339 275 37 9 chr11 77861379 77861488 -70921984 - L2 LINE L2 0 3313 3202 2193 93 3 10 chr11 77861731 77862042 -70921430 - AluSg1 SINE Alu 0 309 1 741 233 78 127 chr11 77862680 77863216 -70920256 - MLT1J LTR MaLR 0 511 2 281 345 26 0 chr11 77863382 77863495 -70919977 - LTR16B LTR ERVL -348 116 1 248 316 102 76 chr11 77863495 77863638 -70919834 + L2 LINE L2 2017 2155 -1159 2317 80 3 3 chr11 77863638 77863938 -70919534 - AluSx SINE Alu -12 300 1 248 316 102 76 chr11 77863938 77864098 -70919374 + L2 LINE L2 2155 2328 -986 39 22 0 0 chr11 77864113 77864159 -70919313 + AT_rich Low_complexity Low_complexity 1 46 0 911 137 0 0 chr11 77864182 77864313 -70919159 - FLAM_C SINE Alu -12 131 1 24 0 0 0 chr11 77864511 77864535 -70918937 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr11 77864693 77864716 -70918756 + AT_rich Low_complexity Low_complexity 1 23 0 825 211 35 17 chr11 77864720 77865135 -70918337 + L1MC5 LINE L1 7459 7924 -37 29 0 0 0 chr11 77865238 77865267 -70918205 + AT_rich Low_complexity Low_complexity 1 29 0 2159 136 0 0 chr11 77865268 77865562 -70917910 - AluSx SINE Alu -18 294 1 418 228 31 74 chr11 77865667 77865829 -70917643 - MLT1L LTR MaLR -7 608 454 186 43 0 0 chr11 77866275 77866298 -70917174 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2088 96 0 21 chr11 77866327 77866609 -70916863 - AluSx SINE Alu -36 276 1 1873 170 7 0 chr11 77866862 77867168 -70916304 + AluJo SINE Alu 1 308 -4 27 81 0 0 chr11 77868350 77868412 -70915060 + AT_rich Low_complexity Low_complexity 1 62 0 853 188 7 0 chr11 77869454 77869598 -70913874 - FRAM SINE Alu -31 145 1 431 217 51 58 chr11 77869808 77869946 -70913526 + L2 LINE L2 3176 3312 -1 445 304 44 30 chr11 77870070 77870409 -70913063 - L1MC/D LINE L1 -743 5403 5089 2304 111 0 3 chr11 77870416 77870722 -70912750 + AluSg1 SINE Alu 2 306 -3 404 236 17 86 chr11 77870783 77870808 -70912664 - L1MA10 LINE L1 0 6334 6310 1377 170 13 78 chr11 77870808 77871114 -70912358 - L1ME2 LINE L1 -9 6155 5870 954 188 0 0 chr11 77871128 77871288 -70912184 + AluJb SINE Alu 133 292 -20 21 0 0 0 chr11 77871299 77871320 -70912152 + AT_rich Low_complexity Low_complexity 1 21 0 256 73 0 0 chr11 77871320 77871361 -70912111 - L1MA3 LINE L1 0 6305 6265 344 192 10 0 chr11 77871373 77871477 -70911995 + (TA)n Simple_repeat Simple_repeat 1 105 0 15235 148 40 16 chr11 77871481 77875398 -70908074 - L1MA2 LINE L1 -16 7707 3662 1744 81 36 0 chr11 77875398 77875620 -70907852 - MER30 DNA MER1_type 0 230 1 15235 148 40 16 chr11 77875620 77876209 -70907263 - L1MA2 LINE L1 -4061 3662 3088 2452 46 0 3 chr11 77876209 77876492 -70906980 - AluY SINE Alu -10 301 20 352 323 60 40 chr11 77877524 77877926 -70905546 - L2 LINE L2 -358 2956 2547 797 161 31 12 chr11 77878102 77878242 -70905230 + L1MB2 LINE L1 6006 6151 -20 243 0 0 0 chr11 77878242 77878269 -70905203 + (TG)n Simple_repeat Simple_repeat 2 28 0 797 161 31 12 chr11 77878269 77878290 -70905182 + L1MB2 LINE L1 6151 6170 -1 1917 126 29 4 chr11 77878292 77878593 -70904879 + AluSx SINE Alu 1 308 0 251 296 0 12 chr11 77879644 77879725 -70903747 - MIR3 SINE MIR -22 186 107 * 382 234 62 31 chr11 77879708 77879836 -70903636 + MIR3 SINE MIR 43 174 -34 610 242 5 84 chr11 77880583 77880773 -70902699 - MIR3 SINE MIR -18 190 16 474 266 30 69 chr11 77881464 77881667 -70901805 - MIR3 SINE MIR -13 195 1 377 287 35 58 chr11 77881727 77881985 -70901487 + L2 LINE L2 2832 3083 -189 432 55 0 0 chr11 77882047 77882102 -70901370 + (TG)n Simple_repeat Simple_repeat 2 56 0 216 278 144 0 chr11 77882610 77882700 -70900772 + MIR SINE MIR 51 153 -109 339 226 13 123 chr11 77883034 77883189 -70900283 + MIR3 SINE MIR 9 146 -62 339 261 80 43 chr11 77883431 77883569 -70899903 + MIR3 SINE MIR 9 151 -57 199 224 211 13 chr11 77883737 77883813 -70899659 - MIR SINE MIR -87 121 31 444 37 0 0 chr11 77885617 77885671 -70897801 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 1650 158 41 0 chr11 77885672 77885938 -70897534 - AluJb SINE Alu -31 281 5 521 283 6 25 chr11 77885948 77886107 -70897365 - MER5A DNA MER1_type -8 181 26 1922 137 8 0 chr11 77886421 77886684 -70896788 - AluSx SINE Alu -47 265 1 522 271 131 9 chr11 77886684 77886905 -70896567 - L3 LINE CR1 -80 1497 1250 1962 164 0 13 chr11 77886907 77887206 -70896266 + AluJb SINE Alu 1 295 -17 2052 113 23 30 chr11 77887209 77887510 -70895962 + AluSg SINE Alu 2 300 -10 303 278 9 26 chr11 77887939 77888054 -70895418 + L2 LINE L2 3010 3122 -191 554 259 112 12 chr11 77888125 77888384 -70895088 + LTR33 LTR ERVL 237 521 0 220 312 220 7 chr11 77888437 77888578 -70894894 + L2 LINE L2 3102 3272 0 250 279 266 19 chr11 77888691 77888845 -70894627 + L2 LINE L2 2244 2435 -879 251 349 12 0 chr11 77888886 77888972 -70894500 + L2 LINE L2 3122 3208 -64 242 282 29 10 chr11 77889444 77889547 -70893925 + MIR3 SINE MIR 89 193 -15 266 250 116 9 chr11 77889663 77889775 -70893697 + MIR SINE MIR 31 154 -108 2262 114 3 3 chr11 77889864 77890172 -70893300 + AluSx SINE Alu 1 308 -4 467 234 54 6 chr11 77890299 77890630 -70892842 - LTR33 LTR ERVL -9 512 90 363 224 179 8 chr11 77890863 77890997 -70892475 + L2 LINE L2 2896 3052 -220 197 224 0 17 chr11 77891428 77891486 -70891986 + MIR SINE MIR 85 141 -67 1113 251 153 8 chr11 77891753 77892112 -70891360 - LTR16C LTR ERVL -9 482 72 2000 144 0 26 chr11 77892148 77892453 -70891019 - AluJb SINE Alu -15 297 1 445 240 48 55 chr11 77892674 77892820 -70890652 + MLT1K LTR MaLR 2 146 -442 1009 230 69 25 chr11 77892895 77893169 -70890303 + MLT1K LTR MaLR 303 588 0 235 321 94 0 chr11 77893285 77893391 -70890081 + L2 LINE L2 3123 3238 -34 * 296 289 154 0 chr11 77893386 77893542 -70889930 + L3 LINE CR1 1050 1229 -348 298 320 98 10 chr11 77893554 77893757 -70889715 - L2 LINE L2 0 3272 3052 531 200 121 24 chr11 77893769 77893934 -70889538 + L3 LINE CR1 1311 1491 -86 276 241 91 86 chr11 77893945 77894365 -70889107 - L1MEc LINE L1 -3997 2399 1978 1939 147 10 3 chr11 77894365 77894664 -70888808 + AluSg SINE Alu 1 301 -9 2101 124 35 0 chr11 77894688 77894978 -70888494 - AluSx SINE Alu -12 300 1 1842 175 69 11 chr11 77895085 77895183 -70888289 + MER82 DNA MER2_type 23 114 -539 2238 116 0 10 chr11 77895183 77895485 -70887987 - AluSx SINE Alu -13 299 1 1842 175 69 11 chr11 77895485 77895735 -70887737 + MER82 DNA MER2_type 114 391 -262 1768 157 10 39 chr11 77896251 77896556 -70886916 + AluJb SINE Alu 1 296 -16 1659 218 81 65 chr11 77896665 77897131 -70886341 + L1MC5 LINE L1 7251 7733 -228 2077 142 0 3 chr11 77897131 77897427 -70886045 - AluJb SINE Alu -17 295 1 1659 218 81 65 chr11 77897427 77897624 -70885848 + L1MC5 LINE L1 7733 7925 -36 751 96 48 24 chr11 77897629 77897642 -70885830 + MER50 LTR ERV1 486 497 -237 1541 170 3 61 chr11 77897642 77897953 -70885519 + AluJo SINE Alu 19 311 -1 751 96 48 24 chr11 77897953 77898064 -70885408 + MER50 LTR ERV1 497 613 -121 942 234 116 65 chr11 77898110 77898507 -70884965 + L1MC4a LINE L1 5517 5933 -1875 2493 70 0 0 chr11 77898813 77899111 -70884361 + AluY SINE Alu 1 298 -13 419 261 0 9 chr11 77899478 77899589 -70883883 + MIR SINE MIR 90 199 -63 1569 187 3 46 chr11 77899613 77899918 -70883554 + AluJo SINE Alu 1 292 -20 242 286 202 0 chr11 77899962 77900081 -70883391 - MIR SINE MIR -71 191 49 353 277 63 50 chr11 77900479 77900638 -70882834 + MIR3 SINE MIR 36 196 -12 347 162 15 0 chr11 77900904 77900972 -70882500 - L1MEc LINE L1 -4236 2160 2092 288 0 0 0 chr11 77900976 77901008 -70882464 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 188 244 39 90 chr11 77901393 77901471 -70882001 - MIR SINE MIR -66 142 69 1482 180 14 14 chr11 77901627 77901905 -70881567 + MER7A DNA MER2_type 2 277 -69 200 83 0 28 chr11 77901921 77901957 -70881515 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 20608 25 0 0 chr11 77901957 77905106 -70878366 - L1PA3 LINE L1 -24 6131 2984 1473 246 102 60 chr11 77905099 77905356 -70878116 - L1MEc LINE L1 -4304 2092 1847 * 1843 131 10 49 chr11 77905356 77905662 -70877810 - AluJo SINE Alu -18 294 1 1473 246 102 60 chr11 77905662 77906021 -70877451 - L1MEc LINE L1 -4549 1847 1450 1617 133 3 111 chr11 77906034 77906350 -70877122 + MER7C DNA MER2_type 33 314 -288 759 174 8 23 chr11 77906350 77906482 -70876990 - FLAM_A SINE Alu -12 130 1 970 130 7 0 chr11 77906496 77906650 -70876822 + MER7C DNA MER2_type 316 470 -133 2013 190 68 32 chr11 77906667 77907110 -70876362 + LTR2B LTR ERV1 32 490 0 714 228 22 0 chr11 77907110 77907246 -70876226 + MER7C DNA MER2_type 464 602 0 2778 247 92 24 chr11 77907247 77907481 -70875991 - L1MEc LINE L1 -4945 1451 1234 2114 148 0 3 chr11 77907481 77907792 -70875680 - AluSx SINE Alu -2 310 1 2778 247 92 24 chr11 77907792 77908581 -70874891 - L1MEc LINE L1 -5162 1234 359 710 73 0 0 chr11 77908581 77908677 -70874795 - AluSg SINE Alu -213 97 2 345 320 40 88 chr11 77908827 77908991 -70874481 - L1MC4a LINE L1 -1966 5842 5702 1755 146 12 53 chr11 77908991 77909313 -70874159 - AluJb SINE Alu -3 309 1 345 320 40 88 chr11 77909313 77909501 -70873971 - L1MC4a LINE L1 -2106 5702 5507 1250 191 42 113 chr11 77909540 77910039 -70873433 + MER39 LTR ERV1 118 707 0 390 256 36 23 chr11 77910054 77910244 -70873228 - L1MC4a LINE L1 -725 5445 5299 192 307 27 13 chr11 77910272 77910347 -70873125 - MIR3 SINE MIR -130 78 3 368 250 11 0 chr11 77910622 77910710 -70872762 - MER39 LTR ERV1 -16 691 603 2160 110 0 7 chr11 77910710 77910992 -70872480 + AluSx SINE Alu 1 280 -32 210 71 0 0 chr11 77910992 77911020 -70872452 + (GGAGA)n Simple_repeat Simple_repeat 5 32 0 616 197 27 48 chr11 77911032 77911220 -70872252 - MER39 LTR ERV1 -91 616 433 1119 211 10 0 chr11 77911223 77911431 -70872041 + AluJo SINE Alu 2 211 -101 204 40 0 0 chr11 77911433 77911458 -70872014 + (A)n Simple_repeat Simple_repeat 1 25 0 2027 118 0 30 chr11 77911461 77911766 -70871706 + AluSq SINE Alu 1 296 -17 351 158 0 0 chr11 77911966 77912023 -70871449 - MER69A DNA AcHobo -3 174 118 463 206 319 58 chr11 77912026 77912214 -70871258 + MLT1E1 LTR MaLR 6 144 -510 2390 72 3 34 chr11 77912214 77912535 -70870937 + AluY SINE Alu 1 311 0 463 206 319 58 chr11 77912535 77912622 -70870850 + MLT1E1 LTR MaLR 144 353 -301 1775 168 18 70 chr11 77912641 77913029 -70870443 - MLT1A2 LTR MaLR -6 368 1 1375 229 65 3 chr11 77913031 77913337 -70870135 + MLT1E3 LTR MaLR 294 618 -6 28 0 0 0 chr11 77913352 77913380 -70870092 + AT_rich Low_complexity Low_complexity 1 28 0 550 175 79 0 chr11 77913380 77913494 -70869978 - MER69A DNA AcHobo -54 123 1 441 252 49 35 chr11 77914079 77914222 -70869250 + MIR3 SINE MIR 16 160 -48 318 317 17 8 chr11 77914224 77914344 -70869128 - L2 LINE L2 0 3313 3193 225 0 0 0 chr11 77914460 77914485 -70868987 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 719 187 75 0 chr11 77914487 77914621 -70868851 - AluJb SINE Alu -32 280 137 2328 88 20 0 chr11 77915490 77915795 -70867677 + AluSq SINE Alu 1 311 -2 1270 210 38 0 chr11 77915796 77916063 -70867409 - L1ME3A LINE L1 -15 6155 5879 1759 114 0 16 chr11 77916182 77916436 -70867036 + AluSx SINE Alu 58 307 -5 195 236 101 45 chr11 77916691 77916780 -70866692 - L2 LINE L2 -38 3234 3141 725 208 6 0 chr11 77916935 77917103 -70866369 + (CA)n Simple_repeat Simple_repeat 2 170 0 1998 135 0 11 chr11 77917646 77917927 -70865545 + AluSx SINE Alu 2 279 -33 603 133 0 0 chr11 77917928 77918033 -70865439 + (GGAA)n Simple_repeat Simple_repeat 3 107 0 280 329 12 0 chr11 77918050 77918135 -70865337 - L2 LINE L2 -541 2773 2688 2449 94 0 0 chr11 77918135 77918443 -70865029 + AluSc SINE Alu 1 308 -1 182 262 48 24 chr11 77919422 77919506 -70863966 + L2 LINE L2 1785 1870 -1444 2160 115 3 23 chr11 77919540 77919708 -70863764 - AluSx SINE Alu -13 299 129 246 32 0 0 chr11 77919708 77919739 -70863733 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2158 100 4 0 chr11 77919739 77920020 -70863452 - AluSg SINE Alu -28 282 1 2160 115 3 23 chr11 77920020 77920155 -70863317 - AluSx SINE Alu -181 131 1 245 206 63 48 chr11 77920336 77920399 -70863073 - AluJo SINE Alu -112 190 127 1141 133 81 33 chr11 77920401 77920707 -70862765 - L1M4 LINE L1 -700 5484 5165 1776 158 16 39 chr11 77920707 77921018 -70862454 - AluJb SINE Alu -8 304 1 1141 133 81 33 chr11 77921018 77921082 -70862390 - L1M4 LINE L1 -1019 5165 5106 26 30 0 0 chr11 77921087 77921120 -70862352 + AT_rich Low_complexity Low_complexity 1 33 0 914 158 0 0 chr11 77921127 77921260 -70862212 - AluSq/x SINE Alu -180 133 1 2243 117 0 0 chr11 77921503 77921794 -70861678 + AluSx SINE Alu 1 291 -21 837 212 43 55 chr11 77921877 77922132 -70861340 - L1MB8 LINE L1 -2 6176 5925 787 177 39 0 chr11 77922139 77922269 -70861203 + AluJo SINE Alu 2 136 -176 1737 167 17 14 chr11 77922283 77922595 -70860877 + AluJb SINE Alu 1 312 0 2209 136 48 16 chr11 77922647 77922959 -70860513 + MLT1B LTR MaLR 1 302 -88 244 0 0 0 chr11 77922959 77922986 -70860486 + (TTTG)n Simple_repeat Simple_repeat 2 180 0 1963 119 3 31 chr11 77922986 77923279 -70860193 - AluSx SINE Alu -27 285 1 2209 136 48 16 chr11 77923279 77923340 -70860132 + MLT1B LTR MaLR 301 387 -3 562 239 119 0 chr11 77923346 77923522 -70859950 - L1ME1 LINE L1 -315 5851 5655 2175 88 3 16 chr11 77923544 77923852 -70859620 - AluSc SINE Alu -5 304 1 2073 99 3 7 chr11 77923852 77924155 -70859317 - AluY SINE Alu -2 309 8 1289 243 157 12 chr11 77924155 77924562 -70858910 - L1ME3A LINE L1 -278 5892 5427 423 310 222 11 chr11 77924810 77925171 -70858301 + L2 LINE L2 2830 3266 -6 1551 106 93 0 chr11 77925412 77925649 -70857823 - MER41B LTR ERV1 -87 548 290 853 226 0 7 chr11 77926022 77926177 -70857295 + MER45A DNA AcHobo 25 178 0 414 290 186 11 chr11 77926177 77926360 -70857112 - MIR SINE MIR -17 245 31 2241 88 3 13 chr11 77926527 77926833 -70856639 - AluSp SINE Alu -10 303 1 274 302 0 0 chr11 77926859 77926955 -70856517 + (CA)n Simple_repeat Simple_repeat 2 97 0 459 231 34 17 chr11 77927091 77927208 -70856264 - MIR3 SINE MIR -53 155 37 377 279 63 0 chr11 77927848 77927959 -70855513 + MIR SINE MIR 48 165 -97 283 83 0 0 chr11 77927966 77928002 -70855470 + MER81 DNA DNA 36 71 -43 1208 123 0 6 chr11 77928145 77928324 -70855148 - AluJb SINE Alu -48 264 87 384 279 105 29 chr11 77928385 77928557 -70854915 - MIR SINE MIR -3 259 75 1066 193 38 28 chr11 77928560 77928773 -70854699 + MLT1A2 LTR MaLR 1 215 -159 2145 98 3 7 chr11 77928776 77929082 -70854390 + AluSq SINE Alu 1 305 -8 396 119 0 0 chr11 77929082 77929141 -70854331 - L1M1 LINE L1 -4841 2724 2666 923 248 132 39 chr11 77929188 77929604 -70853868 - LTR67 LTR ERVL -2 555 101 884 164 13 7 chr11 77929994 77930146 -70853326 + AluJb SINE Alu 145 297 -15 737 159 45 23 chr11 77930525 77930657 -70852815 - AluJb SINE Alu -176 136 2 548 304 87 35 chr11 77930857 77931146 -70852326 + LTR67 LTR ERVL 103 406 -151 302 85 0 41 chr11 77931209 77931269 -70852203 + MADE1 DNA Mariner 1 39 -41 281 270 96 26 chr11 77931269 77931334 -70852138 - L1MB8 LINE L1 -53 6125 6061 1790 175 67 1 chr11 77931334 77931377 -70852095 - L1MB7 LINE L1 -193 5991 5952 180 77 0 0 chr11 77931377 77931403 -70852069 + (CCCCCA)n Simple_repeat Simple_repeat 3 28 0 1790 175 67 1 chr11 77931403 77931719 -70851753 - L1MB7 LINE L1 -232 5952 5657 926 115 0 7 chr11 77931844 77931983 -70851489 - AluJo SINE Alu -172 140 3 553 279 0 16 chr11 77932118 77932247 -70851225 - MIR SINE MIR -62 146 20 440 307 15 14 chr11 77932303 77932450 -70851022 + MIR3 SINE MIR 6 154 -54 1762 158 0 3 chr11 77932563 77932854 -70850618 - AluJo SINE Alu -20 292 3 1813 142 3 23 chr11 77932917 77933226 -70850246 + AluJo SINE Alu 1 303 -9 239 263 1 130 chr11 77934200 77934356 -70849116 + MIR SINE MIR 34 170 -62 717 268 16 16 chr11 77934387 77934570 -70848902 - MIR SINE MIR -59 203 21 759 271 84 55 chr11 77934577 77934887 -70848585 - MLT1H LTR MaLR 0 549 231 2217 103 0 0 chr11 77934904 77935196 -70848276 + AluSg SINE Alu 1 292 -18 275 188 47 16 chr11 77935265 77935329 -70848143 - MLT1H LTR MaLR -472 77 12 418 204 3 1 chr11 77935501 77935584 -70847888 - MIR SINE MIR -47 161 77 963 258 6 32 chr11 77935889 77936203 -70847269 + AluSq SINE Alu 1 306 -7 218 358 104 11 chr11 77936230 77936498 -70846974 - L2 LINE L2 -338 2976 2684 466 254 91 0 chr11 77936768 77936878 -70846594 - L2 LINE L2 0 3313 3194 224 225 99 0 chr11 77936874 77936945 -70846527 + MER5B DNA MER1_type 88 165 -13 * 2459 115 37 3 chr11 77936946 77937321 -70846151 + MLT1B LTR MaLR 3 390 0 526 303 18 120 chr11 77938146 77938645 -70844827 + L2 LINE L2 2818 3265 -7 291 289 62 10 chr11 77938686 77938783 -70844689 - MIR SINE MIR -62 146 45 1919 90 4 4 chr11 77938967 77939222 -70844250 + AluSx SINE Alu 5 259 -53 258 32 0 0 chr11 77939512 77939543 -70843929 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 1830 148 3 3 chr11 77939597 77939900 -70843572 - AluJb SINE Alu -9 303 1 2149 102 3 0 chr11 77940563 77940858 -70842614 - AluSp SINE Alu -17 296 1 381 209 7 137 chr11 77940961 77940995 -70842477 - L1ME4a LINE L1 -1 6120 6083 2369 79 3 0 chr11 77940995 77941298 -70842174 + AluSp SINE Alu 1 304 -9 381 209 7 137 chr11 77941298 77941402 -70842070 - L1ME4a LINE L1 -38 6083 6000 652 244 37 5 chr11 77941402 77941553 -70841919 + MIR SINE MIR 17 168 -40 269 200 55 118 chr11 77941547 77941657 -70841815 + MIR SINE MIR 130 232 -30 * 1993 120 3 19 chr11 77941764 77942080 -70841392 + AluSx SINE Alu 1 311 -1 272 271 177 0 chr11 77942295 77942391 -70841081 + MIR SINE MIR 149 261 -1 999 259 33 0 chr11 77942861 77943104 -70840368 + MIR SINE MIR 8 258 -4 1781 185 63 42 chr11 77943203 77943409 -70840063 - MER63B DNA MER1_type -626 436 236 732 192 0 8 chr11 77943409 77943539 -70839933 - FLAM_C SINE Alu -4 129 1 1781 185 63 42 chr11 77943539 77943759 -70839713 - MER63B DNA MER1_type -826 236 1 411 214 136 28 chr11 77943761 77943859 -70839613 - MIR SINE MIR -59 149 43 204 40 0 0 chr11 77943859 77943884 -70839588 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 411 214 136 28 chr11 77943884 77943896 -70839576 - MIR SINE MIR -165 43 34 681 180 71 6 chr11 77944326 77944509 -70838963 - L1ME3A LINE L1 -2 6168 5974 4375 88 27 8 chr11 77944581 77945182 -70838290 + LTR9 LTR ERV1 1 612 0 316 321 57 67 chr11 77945280 77945375 -70838097 + MIR SINE MIR 46 140 -122 1844 147 23 0 chr11 77945375 77945674 -70837798 + AluSx SINE Alu 1 306 -6 2305 93 3 0 chr11 77945676 77945987 -70837485 + AluSp SINE Alu 1 312 -1 316 321 57 67 chr11 77945987 77946081 -70837391 + MIR SINE MIR 141 236 -26 192 282 56 0 chr11 77946083 77946154 -70837318 - MIR SINE MIR -2 260 186 * 426 324 95 17 chr11 77946145 77946386 -70837086 + L2 LINE L2 2329 2588 -726 2148 88 0 7 chr11 77946401 77946695 -70836777 + AluSq SINE Alu 6 297 -16 1202 159 45 55 chr11 77946701 77946991 -70836481 - AluJb SINE Alu -24 288 2 2090 106 7 0 chr11 77947003 77947305 -70836167 - AluSx SINE Alu -8 304 1 1965 128 0 0 chr11 77947306 77947602 -70835870 - AluSx SINE Alu -16 296 1 291 274 48 73 chr11 77947647 77947771 -70835701 + L2 LINE L2 3193 3313 0 761 227 40 23 chr11 77947772 77947948 -70835524 - MIR SINE MIR -82 180 2 1106 128 97 4 chr11 77948316 77948543 -70834929 + MER44D DNA MER2_type 1 518 -91 185 324 34 61 chr11 77949194 77949342 -70834130 + MIR SINE MIR 78 221 -41 261 240 240 8 chr11 77949345 77949470 -70834002 - MIR SINE MIR -17 245 92 1397 193 43 14 chr11 77950329 77950609 -70832863 - MLT1C LTR MaLR -179 288 1 610 149 32 97 chr11 77950609 77950763 -70832709 - L1M4 LINE L1 -395 5789 5646 1943 106 127 9 chr11 77950764 77951095 -70832377 - THE1C LTR MaLR 0 375 6 1427 140 51 104 chr11 77951095 77951280 -70832192 - L1M4 LINE L1 -546 5638 5445 666 150 108 0 chr11 77951280 77951400 -70832072 - FLAM_A SINE Alu 0 133 1 1427 140 51 104 chr11 77951400 77951721 -70831751 - L1M4 LINE L1 -739 5445 5173 1668 161 16 39 chr11 77951721 77952032 -70831440 - AluJb SINE Alu -8 304 1 1427 140 51 104 chr11 77952032 77952097 -70831375 - L1M4 LINE L1 -1011 5173 5106 26 30 0 0 chr11 77952102 77952135 -70831337 + AT_rich Low_complexity Low_complexity 1 33 0 933 133 0 15 chr11 77952140 77952275 -70831197 - FLAM_C SINE Alu 0 133 1 2110 113 0 10 chr11 77952283 77952594 -70830878 - AluSx SINE Alu -4 308 1 4015 146 62 10 chr11 77952598 77953374 -70830098 - L1MA8 LINE L1 -3 6288 5473 647 201 8 0 chr11 77953375 77953509 -70829963 - L1M4 LINE L1 -1025 5121 4987 1599 175 3 10 chr11 77953580 77953871 -70829601 - AluJb SINE Alu -23 289 1 1370 186 51 27 chr11 77953911 77954207 -70829265 + AluJo SINE Alu 9 311 -1 428 215 0 11 chr11 77954339 77954432 -70829040 - L1M4 LINE L1 -1140 5006 4915 265 222 0 89 chr11 77954443 77954533 -70828939 + L2 LINE L2 3153 3234 -79 1659 231 108 24 chr11 77954536 77955078 -70828394 - MLT1G LTR MaLR 0 590 1 1451 204 10 7 chr11 77955154 77955443 -70828029 - AluJo SINE Alu -22 290 1 2026 106 14 0 chr11 77955480 77955773 -70827699 - AluSg SINE Alu -13 297 1 197 298 18 0 chr11 77955791 77955848 -70827624 - L2 LINE L2 -46 3267 3210 1865 125 28 3 chr11 77956068 77956355 -70827117 - AluSg SINE Alu -16 294 1 28 48 0 0 chr11 77956366 77956408 -70827064 + AT_rich Low_complexity Low_complexity 1 42 0 605 133 0 0 chr11 77956415 77956505 -70826967 + AluS SINE Alu 2 91 -222 532 71 29 0 chr11 77956501 77956571 -70826901 - BC200 scRNA scRNA -127 73 2 * 947 108 64 19 chr11 77956589 77956746 -70826726 + AluSg/x SINE Alu 115 278 -32 258 105 0 0 chr11 77956746 77956784 -70826688 + (GGAGA)n Simple_repeat Simple_repeat 5 42 0 608 197 27 48 chr11 77956786 77956974 -70826498 - MER39 LTR ERV1 -91 616 433 1035 211 10 0 chr11 77956977 77957185 -70826287 + AluJo SINE Alu 2 211 -101 195 42 0 0 chr11 77957187 77957211 -70826261 + (A)n Simple_repeat Simple_repeat 1 24 0 226 234 227 7 chr11 77957632 77957773 -70825699 + L1ME LINE L1 5714 5885 -285 1416 192 0 3 chr11 77957782 77958068 -70825404 + AluY SINE Alu 10 294 -17 1861 151 0 3 chr11 77958732 77959036 -70824436 + AluJb SINE Alu 1 303 -9 258 32 0 0 chr11 77959090 77959121 -70824351 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 1628 166 0 0 chr11 77959411 77959670 -70823802 - AluSx SINE Alu -53 259 1 1907 124 3 24 chr11 77959744 77960042 -70823430 + AluJo SINE Alu 1 292 -20 180 0 0 0 chr11 77960120 77960140 -70823332 + (CAGGC)n Simple_repeat Simple_repeat 5 24 0 1954 73 0 77 chr11 77960596 77960768 -70822704 - AluSx SINE Alu -7 305 166 2233 85 0 3 chr11 77960768 77961063 -70822409 - AluSc SINE Alu -14 295 2 1954 73 0 77 chr11 77961063 77961203 -70822269 - AluSx SINE Alu -146 166 17 2486 151 37 5 chr11 77961203 77961613 -70821859 + MSTB LTR MaLR 4 426 0 200 327 18 0 chr11 77961626 77961681 -70821791 + MIR SINE MIR 200 255 -7 242 232 18 0 chr11 77961917 77961973 -70821499 + MIR SINE MIR 86 142 -120 2843 245 91 24 chr11 77962035 77962844 -70820628 + L1MEc LINE L1 338 1234 -5162 1994 144 0 3 chr11 77962844 77963149 -70820323 + AluSx SINE Alu 1 304 -8 2843 245 91 24 chr11 77963149 77963383 -70820089 + L1MEc LINE L1 1234 1451 -4945 711 228 22 0 chr11 77963384 77963520 -70819952 - Tigger3(Golem) DNA MER2_type 0 3029 2891 2024 190 68 32 chr11 77963520 77963963 -70819509 - LTR2B LTR ERV1 0 490 32 1288 98 5 67 chr11 77963980 77964148 -70819324 - Tigger3(Golem) DNA MER2_type -133 2895 2743 772 174 8 23 chr11 77964148 77964280 -70819192 + FLAM_A SINE Alu 1 130 -3 1288 98 5 67 chr11 77964280 77964335 -70819137 - Tigger3(Golem) DNA MER2_type -285 2743 2686 2129 103 0 13 chr11 77964622 77964924 -70818548 - AluSx SINE Alu -14 298 1 2117 117 0 0 chr11 77965167 77965458 -70818014 + AluSx SINE Alu 1 291 -21 823 212 43 55 chr11 77965541 77965796 -70817676 - L1MB8 LINE L1 -2 6176 5925 789 177 39 0 chr11 77965803 77965933 -70817539 + AluJo SINE Alu 2 136 -176 1624 167 17 14 chr11 77965947 77966259 -70817213 + AluJb SINE Alu 1 312 0 590 242 185 0 chr11 77966267 77966311 -70817161 - L1ME1 LINE L1 -243 5923 5888 2197 136 48 16 chr11 77966311 77966623 -70816849 + MLT1B LTR MaLR 1 329 -61 1841 119 3 31 chr11 77966623 77966943 -70816529 - AluSx SINE Alu 0 312 1 2197 136 48 16 chr11 77966943 77967004 -70816468 + MLT1B LTR MaLR 329 387 -3 590 242 185 0 chr11 77967004 77967186 -70816286 - L1ME1 LINE L1 -278 5888 5655 2175 88 3 16 chr11 77967208 77967516 -70815956 - AluSc SINE Alu -5 304 1 210 37 0 0 chr11 77967517 77967544 -70815928 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1845 115 3 24 chr11 77967544 77967831 -70815641 - AluSg SINE Alu -29 281 1 1709 180 0 0 chr11 77967859 77968148 -70815324 + AluJo SINE Alu 1 289 -23 316 331 184 50 chr11 77968167 77968563 -70814909 + L2 LINE L2 2824 3272 0 242 322 11 35 chr11 77968572 77968659 -70814813 - L2 LINE L2 0 3313 3229 1915 110 0 4 chr11 77968680 77968944 -70814528 + AluSg SINE Alu 1 263 -47 2201 59 3 18 chr11 77970116 77970440 -70813032 - AluY SINE Alu 0 322 3 1615 169 0 53 chr11 77970447 77970774 -70812698 - AluJb SINE Alu 0 311 1 25 90 0 0 chr11 77970777 77970844 -70812628 + AT_rich Low_complexity Low_complexity 1 67 0 311 187 13 40 chr11 77970997 77971072 -70812400 - L1MC5 LINE L1 -728 7233 7161 1339 156 0 22 chr11 77971072 77971297 -70812175 - AluJo SINE Alu -92 220 1 1935 123 7 17 chr11 77972243 77972536 -70810936 - AluSx SINE Alu -22 290 1 3238 184 47 83 chr11 77972536 77973076 -70810396 + L1MB7 LINE L1 3940 4498 -1686 228 227 0 0 chr11 77973076 77973120 -70810352 + AluJ/monomer SINE Alu 5 48 -251 3238 184 47 83 chr11 77973120 77973175 -70810297 + L1MB7 LINE L1 4498 4553 -1631 1689 79 0 0 chr11 77973175 77973390 -70810082 + AluSq SINE Alu 1 215 -98 204 40 0 0 chr11 77973390 77973415 -70810057 + (GA)n Simple_repeat Simple_repeat 1 25 0 3238 184 47 83 chr11 77973415 77973945 -70809527 + L1MB7 LINE L1 4552 5100 -1084 992 150 32 27 chr11 77973945 77974090 -70809382 + L1MB2 LINE L1 5983 6131 -40 2331 42 28 11 chr11 77974090 77974374 -70809098 + AluY SINE Alu 1 289 -22 992 150 32 27 chr11 77974374 77974415 -70809057 + L1MB2 LINE L1 6131 6170 -1 3238 184 47 83 chr11 77974415 77975322 -70808150 + L1MB7 LINE L1 5100 5907 -277 260 340 32 19 chr11 77975660 77975816 -70807656 - L2 LINE L2 -1003 2311 2154 392 299 51 41 chr11 77975887 77976084 -70807388 + MIR SINE MIR 14 212 -50 552 227 21 77 chr11 77976843 77977037 -70806435 - MIR3 SINE MIR -20 188 6 211 226 65 133 chr11 77977440 77977688 -70805784 - L2 LINE L2 -2 3270 3040 2345 104 3 0 chr11 77977704 77978012 -70805460 - AluSq SINE Alu -2 311 3 2162 20 8 8 chr11 77978034 77978280 -70805192 + AluYb8 SINE Alu 63 308 -10 202 282 136 19 chr11 77978853 77978956 -70804516 - L2 LINE L2 -5 3308 3194 * 218 225 99 0 chr11 77978952 77979023 -70804449 + MER5B DNA MER1_type 88 165 -13 2593 118 37 0 chr11 77979024 77979398 -70804074 + MLT1B LTR MaLR 3 390 0 519 287 24 124 chr11 77980223 77980721 -70802751 + L2 LINE L2 2818 3265 -7 284 289 62 10 chr11 77980762 77980859 -70802613 - MIR SINE MIR -62 146 45 2275 92 3 3 chr11 77981043 77981337 -70802135 + AluSq SINE Alu 5 298 -15 2315 115 3 6 chr11 77981394 77981707 -70801765 - AluSp SINE Alu -1 312 1 1498 191 25 14 chr11 77982197 77982479 -70800993 + AluJo SINE Alu 6 290 -22 192 233 90 98 chr11 77982492 77982625 -70800847 - L2 LINE L2 -208 3064 2933 924 124 14 14 chr11 77982777 77982922 -70800550 - BC200 scRNA scRNA -54 146 2 1898 247 142 8 chr11 77982963 77983873 -70799599 + L2 LINE L2 2275 3311 -2 551 223 27 9 chr11 77984154 77984266 -70799206 - MER81 DNA DNA 0 114 1 186 333 12 36 chr11 77984956 77985040 -70798432 - MIR3 SINE MIR -48 160 79 1733 162 0 4 chr11 77986482 77986748 -70796724 + AluJb SINE Alu 1 265 -47 2302 59 3 18 chr11 77987920 77988244 -70795228 - AluY SINE Alu 0 322 3 1718 169 0 53 chr11 77988251 77988578 -70794894 - AluJb SINE Alu 0 311 1 25 90 0 0 chr11 77988581 77988648 -70794824 + AT_rich Low_complexity Low_complexity 1 67 0 326 187 13 40 chr11 77988801 77988876 -70794596 - L1MC5 LINE L1 -728 7233 7161 1416 156 0 22 chr11 77988876 77989101 -70794371 - AluJo SINE Alu -92 220 1 1446 222 85 45 chr11 77989963 77990020 -70793452 - L1MC4a LINE L1 -696 5637 5584 252 0 0 0 chr11 77990026 77990054 -70793418 + (TA)n Simple_repeat Simple_repeat 2 29 0 2063 115 6 22 chr11 77990054 77990361 -70793111 - AluSg1 SINE Alu -5 304 1 1446 222 85 45 chr11 77990361 77990888 -70792584 - L1MC4a LINE L1 -749 5584 5325 2235 120 0 0 chr11 77990888 77991189 -70792283 - AluSc SINE Alu -8 301 1 1446 222 85 45 chr11 77991189 77991254 -70792218 - L1MC4a LINE L1 -1008 5325 5264 416 280 40 46 chr11 77991358 77991457 -70792015 - L1MC4a LINE L1 -1026 5120 5022 2221 117 0 0 chr11 77991457 77991755 -70791717 - AluSx SINE Alu -14 298 1 416 280 40 46 chr11 77991755 77991904 -70791568 - L1MC4a LINE L1 -1124 5022 4877 427 280 47 0 chr11 77992969 77993076 -70790396 - L2 LINE L2 0 3272 3161 244 311 75 0 chr11 77993943 77994049 -70789423 + L2 LINE L2 2943 3056 -216 371 317 21 7 chr11 77994196 77994338 -70789134 + MIR SINE MIR 51 194 -68 809 263 75 142 chr11 77994619 77995109 -70788363 - L2 LINE L2 -235 3037 2516 2368 78 0 0 chr11 77995109 77995402 -70788070 + AluY SINE Alu 1 293 -18 809 263 75 142 chr11 77995402 77996394 -70787078 - L2 LINE L2 -756 2516 1617 299 237 206 0 chr11 77996455 77996552 -70786920 + L2 LINE L2 3197 3313 0 23 0 0 0 chr11 77996610 77996633 -70786839 + AT_rich Low_complexity Low_complexity 1 23 0 234 282 24 35 chr11 77997633 77997718 -70785754 - L2 LINE L2 -2 3270 3187 2363 100 0 0 chr11 77998079 77998380 -70785092 - AluSg SINE Alu -9 301 1 1767 192 3 0 chr11 77998402 77998699 -70784773 - AluJb SINE Alu -14 298 1 201 305 84 23 chr11 77998938 77999069 -70784403 + MIR3 SINE MIR 42 180 -28 214 205 0 0 chr11 78000030 78000069 -70783403 + (TTA)n Simple_repeat Simple_repeat 2 40 0 390 289 167 17 chr11 78000150 78000330 -70783142 - MIR SINE MIR -7 255 49 207 280 0 0 chr11 78001094 78001144 -70782328 + MIR SINE MIR 2 51 -211 2038 138 17 76 chr11 78001821 78002175 -70781297 + MER1B DNA MER1_type 5 337 0 509 241 58 7 chr11 78002270 78002407 -70781065 - L2 LINE L2 -5 3308 3165 611 239 26 0 chr11 78002417 78002530 -70780942 + FLAM_A SINE Alu 1 116 -17 207 0 0 0 chr11 78002531 78002554 -70780918 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4281 28 0 0 chr11 78002556 78003024 -70780448 - L1PA3 LINE L1 -5 6150 5683 23 54 0 0 chr11 78003156 78003193 -70780279 + AT_rich Low_complexity Low_complexity 1 37 0 3442 136 88 13 chr11 78003365 78003833 -70779639 + L1MB7 LINE L1 5485 6016 -168 2351 59 0 7 chr11 78003833 78004150 -70779322 + AluY SINE Alu 1 315 0 3442 136 88 13 chr11 78004150 78004313 -70779159 + L1MB7 LINE L1 6016 6165 -19 249 224 141 35 chr11 78005413 78005498 -70777974 + MIR SINE MIR 16 109 -153 185 306 347 0 chr11 78005507 78005628 -70777844 - MIR SINE MIR -70 192 30 247 276 76 29 chr11 78005733 78005838 -70777634 + MIR SINE MIR 70 179 -83 196 256 0 0 chr11 78005984 78006027 -70777445 + L2 LINE L2 3247 3289 -24 315 0 0 0 chr11 78006553 78006588 -70776884 + (TG)n Simple_repeat Simple_repeat 2 36 0 2542 241 92 23 chr11 78007015 78007428 -70776044 - L1M4 LINE L1 -2088 4058 3675 7398 106 82 15 chr11 78007428 78008579 -70774893 + Tigger3b DNA MER2_type 4 1231 0 2542 241 92 23 chr11 78008579 78009096 -70774376 - L1M4 LINE L1 -2471 3675 3063 184 369 71 0 chr11 78009326 78009410 -70774062 + L2 LINE L2 2926 3015 -257 244 321 64 37 chr11 78009493 78009602 -70773870 + L2 LINE L2 3201 3312 -1 203 61 30 0 chr11 78010252 78010285 -70773187 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 556 312 34 22 chr11 78011919 78012137 -70771335 + MIR SINE MIR 15 234 -28 2399 69 3 16 chr11 78012158 78012462 -70771010 - AluSg SINE Alu -10 300 1 513 0 0 0 chr11 78013558 78013615 -70769857 + (CA)n Simple_repeat Simple_repeat 2 58 0 196 229 0 115 chr11 78013648 78013709 -70769763 - L2 LINE L2 -93 3179 3126 459 273 86 11 chr11 78014772 78014959 -70768513 + MIR SINE MIR 2 202 -60 25 51 0 0 chr11 78015071 78015110 -70768362 + AT_rich Low_complexity Low_complexity 1 39 0 1628 177 37 7 chr11 78016088 78016387 -70767085 + AluJo SINE Alu 1 308 -4 202 262 0 0 chr11 78017070 78017112 -70766360 - MER5A DNA MER1_type -137 52 11 1318 142 29 0 chr11 78018228 78018433 -70765039 - L1MB7 LINE L1 -317 5867 5657 247 344 21 0 chr11 78018447 78018543 -70764929 + LTR67 LTR ERVL 431 528 -29 978 115 0 7 chr11 78018558 78018697 -70764775 - AluJo SINE Alu -172 140 3 550 279 0 16 chr11 78018832 78018961 -70764511 - MIR SINE MIR -62 146 20 434 308 8 0 chr11 78019047 78019164 -70764308 + MIR3 SINE MIR 37 154 -54 1799 168 0 3 chr11 78019277 78019568 -70763904 - AluJo SINE Alu -20 292 3 1341 256 3 7 chr11 78019631 78019928 -70763544 + AluJo SINE Alu 1 296 -6 241 317 10 29 chr11 78020911 78021015 -70762457 + MIR SINE MIR 34 135 -73 699 268 16 16 chr11 78021098 78021281 -70762191 - MIR SINE MIR -59 203 21 750 271 84 55 chr11 78021288 78021598 -70761874 - MLT1H LTR MaLR 0 549 231 2332 103 0 0 chr11 78021615 78021907 -70761565 + AluSg SINE Alu 1 292 -18 228 200 46 15 chr11 78021975 78022040 -70761432 - MLT1H LTR MaLR -471 78 12 405 204 3 1 chr11 78022212 78022295 -70761177 - MIR SINE MIR -47 161 77 723 313 8 4 chr11 78022413 78022678 -70760794 - AluSx SINE Alu -10 302 37 410 296 64 8 chr11 78022834 78022959 -70760513 - MER94 DNA DNA -2 132 1 551 218 55 0 chr11 78022981 78023091 -70760381 - MIR3 SINE MIR -52 156 41 318 196 22 87 chr11 78023203 78023295 -70760177 - MIR SINE MIR -1 261 176 435 158 67 42 chr11 78023655 78023775 -70759697 - L1ME4a LINE L1 -35 6086 5964 203 194 0 0 chr11 78023775 78023811 -70759661 + T-rich Low_complexity Low_complexity 1 36 0 270 81 0 0 chr11 78024522 78024559 -70758913 + (T)n Simple_repeat Simple_repeat 1 37 0 418 273 167 0 chr11 78025825 78025975 -70757497 - MER5A DNA MER1_type -6 183 9 1122 203 0 0 chr11 78026206 78026388 -70757084 + MER5A DNA MER1_type 1 182 -7 281 222 231 17 chr11 78030081 78030198 -70753274 + MIR SINE MIR 63 204 -58 322 325 145 35 chr11 78030454 78030737 -70752735 - L2 LINE L2 -18 3254 2941 431 307 115 20 chr11 78032582 78032798 -70750674 + MIR SINE MIR 3 238 -24 776 208 146 0 chr11 78032817 78032995 -70750477 - MIR SINE MIR -57 205 2 742 128 0 9 chr11 78033048 78033148 -70750324 - AluSg/x SINE Alu -14 296 196 1855 69 0 0 chr11 78033148 78033380 -70750092 - AluSx SINE Alu -80 232 1 334 343 0 0 chr11 78033422 78033521 -70749951 - L3 LINE CR1 -6 1571 1473 2371 108 6 20 chr11 78034006 78034348 -70749124 - MER1B DNA MER1_type 0 337 1 289 250 154 51 chr11 78034459 78034615 -70748857 - MIR SINE MIR -44 218 47 253 310 43 26 chr11 78034716 78034832 -70748640 - L2 LINE L2 -21 3292 3175 320 305 99 53 chr11 78034842 78034973 -70748499 - L2 LINE L2 0 3272 3136 242 237 320 19 chr11 78034990 78035146 -70748326 - MIR SINE MIR -1 261 59 415 351 123 9 chr11 78035545 78035917 -70747555 - L2 LINE L2 -172 3100 2682 373 286 234 0 chr11 78036328 78036499 -70746973 - MIR SINE MIR -8 254 44 885 117 0 0 chr11 78036833 78036953 -70746519 + AluSq/x SINE Alu 1 120 -192 196 167 152 15 chr11 78036955 78037021 -70746451 - L2 LINE L2 -576 2738 2664 584 247 113 16 chr11 78037038 78037232 -70746240 + MIR SINE MIR 17 226 -36 795 192 82 22 chr11 78038166 78038348 -70745124 + L2 LINE L2 3121 3313 0 316 252 51 7 chr11 78038359 78038494 -70744978 + MIR SINE MIR 61 205 -57 * 502 297 83 73 chr11 78038480 78038977 -70744495 - L2 LINE L2 0 3272 2743 317 278 128 15 chr11 78039048 78039181 -70744291 - MIR3 SINE MIR -19 189 42 582 178 115 13 chr11 78039385 78039542 -70743930 - L1ME LINE L1 -439 5682 5510 477 93 67 0 chr11 78040248 78040323 -70743149 - MADE1 DNA Mariner 0 80 1 1503 217 69 60 chr11 78040440 78040894 -70742578 + L1MEc LINE L1 2633 3083 -3874 2179 172 70 10 chr11 78040894 78041296 -70742176 - MSTB LTR MaLR 0 426 1 1503 217 69 60 chr11 78041296 78041560 -70741912 + L1MEc LINE L1 3083 3343 -3614 478 287 42 18 chr11 78041615 78041782 -70741690 + L1MEc LINE L1 76 246 -6613 577 209 117 174 chr11 78042021 78042594 -70740878 + L1MEc LINE L1 877 1416 -5439 406 274 0 0 chr11 78042618 78042720 -70740752 + L1MEc LINE L1 3417 3518 -3439 1326 226 88 50 chr11 78042736 78043279 -70740193 + L1MEc LINE L1 4733 5296 -1661 * 2109 215 24 20 chr11 78043278 78043414 -70740058 - L1 LINE L1 -3086 4479 4345 2197 96 0 0 chr11 78043414 78043705 -70739767 + AluSg SINE Alu 1 291 -19 2109 215 24 20 chr11 78043705 78044071 -70739401 - L1 LINE L1 -3220 4345 3975 21845 115 85 10 chr11 78044074 78045157 -70738315 - L1 LINE L1 -3684 3881 2882 2686 78 20 0 chr11 78045157 78045503 -70737969 - THE1A LTR MaLR -2 353 1 12230 88 3 1 chr11 78045503 78047079 -70736393 - THE1A-int LTR MaLR 0 1580 1 2905 73 0 0 chr11 78047079 78047434 -70736038 - THE1A LTR MaLR 0 355 1 21845 115 85 10 chr11 78047434 78047625 -70735847 - L1 LINE L1 -4683 2882 2707 2292 110 129 5 chr11 78047625 78048006 -70735466 + MSTA LTR MaLR 1 428 0 21845 115 85 10 chr11 78048006 78050318 -70733154 - L1 LINE L1 -4858 2707 17 2380 188 44 30 chr11 78050318 78051553 -70731919 + L1MEc LINE L1 5283 6630 -345 1789 190 14 8 chr11 78051560 78051928 -70731544 + L1M4 LINE L1 3547 3916 -2230 2144 126 0 0 chr11 78051929 78052238 -70731234 + AluSx SINE Alu 1 309 -3 30 0 0 0 chr11 78052238 78052268 -70731204 + AT_rich Low_complexity Low_complexity 1 30 0 975 155 11 33 chr11 78052268 78052449 -70731023 + AluSg/x SINE Alu 120 296 -16 337 267 100 20 chr11 78052646 78052796 -70730676 + MIR SINE MIR 31 192 -70 274 314 16 0 chr11 78053010 78053134 -70730338 - L2 LINE L2 -551 2763 2638 307 276 95 9 chr11 78053286 78053402 -70730070 + MER5A DNA MER1_type 44 169 -20 208 263 13 53 chr11 78053535 78053611 -70729861 + MIR SINE MIR 114 186 -76 891 108 9 181 chr11 78054142 78054374 -70729098 + 7SK RNA RNA 1 192 -1 314 282 82 9 chr11 78054374 78054484 -70728988 + MIR SINE MIR 21 138 -70 893 253 8 40 chr11 78054607 78054746 -70728726 + MIR SINE MIR 20 149 -113 1756 214 67 121 chr11 78054746 78055373 -70728099 + MLT1E LTR MaLR 1 593 0 893 253 8 40 chr11 78055373 78055482 -70727990 + MIR SINE MIR 149 260 -2 316 161 18 0 chr11 78055640 78055695 -70727777 - MLT1L LTR MaLR 0 615 560 808 299 48 36 chr11 78055695 78056110 -70727362 - LTR16C LTR ERVL 0 491 72 463 247 134 44 chr11 78056189 78056425 -70727047 - MLT1L LTR MaLR -50 565 237 693 244 25 45 chr11 78056637 78056879 -70726593 + L2 LINE L2 2511 2747 -567 202 256 0 0 chr11 78057144 78057183 -70726289 + L2 LINE L2 3265 3303 -10 204 200 0 0 chr11 78057216 78057261 -70726211 + (CCA)n Simple_repeat Simple_repeat 1 45 0 289 179 36 0 chr11 78057264 78057320 -70726152 - Zaphod DNA AcHobo -5 4026 3969 215 303 98 68 chr11 78057378 78057642 -70725830 + L2 LINE L2 2908 3179 -93 1469 254 32 28 chr11 78057703 78057996 -70725476 + MER115 DNA AcHobo 1 291 -402 1966 243 54 26 chr11 78057996 78058053 -70725419 - MLT1G LTR MaLR -1 589 535 2004 149 3 0 chr11 78058053 78058361 -70725111 - AluJo SINE Alu -2 310 2 1966 243 54 26 chr11 78058361 78058876 -70724596 - MLT1G LTR MaLR -55 535 1 1469 254 32 28 chr11 78058876 78059223 -70724249 + MER115 DNA AcHobo 291 693 0 240 238 0 0 chr11 78059223 78059286 -70724186 + (TGG)n Simple_repeat Simple_repeat 3 65 0 231 146 0 83 chr11 78059287 78059335 -70724137 - L2 LINE L2 -2 3311 3268 409 344 159 13 chr11 78059382 78059690 -70723782 - L2 LINE L2 -1 3271 2919 232 291 70 80 chr11 78060179 78060392 -70723080 - L2 LINE L2 -482 2832 2622 286 229 39 52 chr11 78060419 78060527 -70722945 + MIR SINE MIR 15 118 -107 634 231 12 0 chr11 78061160 78061329 -70722143 + L1MA4 LINE L1 5946 6116 -184 528 185 51 6 chr11 78061316 78061434 -70722038 + L1MA4A LINE L1 6053 6155 -1 * 327 287 87 14 chr11 78061457 78061622 -70721850 + MIR SINE MIR 37 212 -50 922 135 0 0 chr11 78063895 78064028 -70719444 + FLAM_C SINE Alu 1 133 0 273 274 89 0 chr11 78064187 78064311 -70719161 + MIR3 SINE MIR 13 147 -61 2028 116 0 3 chr11 78064414 78064729 -70718743 - AluSx SINE Alu 0 314 1 319 256 45 68 chr11 78064856 78064989 -70718483 + MIR3 SINE MIR 9 138 -70 274 327 28 7 chr11 78065158 78065306 -70718166 + MIR SINE MIR 30 181 -62 21 0 0 0 chr11 78065363 78065384 -70718088 + AT_rich Low_complexity Low_complexity 1 21 0 194 308 166 16 chr11 78066306 78066553 -70716919 + L2 LINE L2 2472 2755 -559 337 181 21 21 chr11 78066652 78066746 -70716726 + GA-rich Low_complexity Low_complexity 1 94 0 182 290 38 114 chr11 78066915 78066975 -70716497 + L2 LINE L2 2932 2995 -277 1849 102 29 51 chr11 78066975 78067289 -70716183 - AluSq SINE Alu -6 307 1 182 290 38 114 chr11 78067289 78067490 -70715982 + L2 LINE L2 2995 3173 -99 300 53 0 0 chr11 78067549 78067587 -70715885 + (TGGA)n Simple_repeat Simple_repeat 1 38 0 396 0 0 0 chr11 78067594 78067638 -70715834 + (CA)n Simple_repeat Simple_repeat 2 45 0 395 266 124 66 chr11 78068176 78068571 -70714901 + L3 LINE CR1 1158 1575 -2 651 236 126 6 chr11 78069000 78069182 -70714290 + MIR SINE MIR 37 240 -22 2065 102 24 0 chr11 78069533 78069848 -70713624 - AluSx SINE Alu 0 312 1 408 305 191 9 chr11 78069850 78070060 -70713412 - L3 LINE CR1 -4 1573 1326 573 223 211 0 chr11 78070076 78070251 -70713221 - MIR SINE MIR -7 255 44 483 282 18 0 chr11 78070272 78070435 -70713037 - L3 LINE CR1 -244 1333 1168 918 199 106 4 chr11 78070440 78070676 -70712796 + MIR SINE MIR 3 262 0 1925 121 13 20 chr11 78070889 78071194 -70712278 + AluJb SINE Alu 2 304 -8 273 284 82 22 chr11 78072685 78072819 -70710653 + MIR3 SINE MIR 15 156 -52 266 343 0 0 chr11 78073008 78073075 -70710397 + L2 LINE L2 3116 3182 -90 344 157 18 0 chr11 78073174 78073242 -70710230 + MIR3 SINE MIR 100 170 -38 1846 202 70 24 chr11 78073356 78073782 -70709690 - MLT1D LTR MaLR -28 477 27 1878 141 0 10 chr11 78073782 78074087 -70709385 - AluSx SINE Alu -10 302 1 1846 202 70 24 chr11 78074087 78074116 -70709356 - MLT1D LTR MaLR -478 27 1 380 299 63 8 chr11 78074154 78074281 -70709191 - MER94 DNA DNA 0 134 1 545 225 45 0 chr11 78074303 78074414 -70709058 - MIR3 SINE MIR -52 156 41 336 196 22 87 chr11 78074526 78074618 -70708854 - MIR SINE MIR -1 261 176 324 185 92 67 chr11 78074980 78075099 -70708373 - L1ME4a LINE L1 -36 6085 5964 212 189 0 0 chr11 78075099 78075136 -70708336 + T-rich Low_complexity Low_complexity 1 37 0 336 299 32 59 chr11 78075861 78076048 -70707424 - MIR3 SINE MIR -3 205 24 203 273 61 0 chr11 78076245 78076311 -70707161 - MIR3 SINE MIR -15 193 124 364 313 39 0 chr11 78076425 78076590 -70706882 + MIR SINE MIR 54 232 -30 1895 163 3 10 chr11 78076788 78077101 -70706371 - AluJo SINE Alu -1 311 1 278 263 99 36 chr11 78077381 78077614 -70705858 + MIR SINE MIR 20 261 -1 298 303 22 0 chr11 78077966 78078055 -70705417 - MIR SINE MIR -60 148 58 263 276 149 0 chr11 78079978 78080065 -70703407 + L2 LINE L2 3168 3267 -5 387 234 27 18 chr11 78080184 78080295 -70703177 + MIR3 SINE MIR 88 199 -9 181 227 91 23 chr11 78081428 78081516 -70701956 - L2 LINE L2 -248 3024 2931 426 303 151 0 chr11 78081931 78082116 -70701356 + MIR SINE MIR 48 260 -2 4074 128 8 6 chr11 78082265 78082930 -70700542 - L1P LINE L1 -1670 4476 3811 344 138 0 31 chr11 78082930 78082995 -70700477 + THE1B LTR MaLR 1 63 -301 6473 135 95 1 chr11 78083023 78084077 -70699395 + THE1C-int LTR MaLR 427 1579 -1 1831 153 19 37 chr11 78084077 78084234 -70699238 + THE1C LTR MaLR 5 163 -212 1942 178 0 0 chr11 78084234 78084538 -70698934 - AluSx SINE Alu -8 304 1 1831 153 19 37 chr11 78084538 78084758 -70698714 + THE1C LTR MaLR 163 375 0 2422 147 7 7 chr11 78084759 78085174 -70698298 - L1P LINE L1 -2334 3812 3398 1079 219 52 10 chr11 78085507 78085817 -70697655 - L1M4 LINE L1 -3714 2930 2608 1238 161 0 13 chr11 78085832 78086056 -70697416 + Tigger1 DNA MER2_type 1 221 -2197 3016 200 108 1 chr11 78086083 78086879 -70696593 - L1M4 LINE L1 -4833 1709 829 2059 167 0 0 chr11 78086892 78087204 -70696268 - AluJo SINE Alu 0 312 1 315 274 0 14 chr11 78087742 78087815 -70695657 - L2 LINE L2 0 3313 3242 324 0 0 0 chr11 78088042 78088078 -70695394 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 441 172 140 11 chr11 78088084 78088177 -70695295 - FLAM_A SINE Alu -30 112 8 1890 197 58 0 chr11 78088239 78088650 -70694822 - MER63B DNA MER1_type -1 435 1 201 158 26 0 chr11 78088832 78088870 -70694602 + L3 LINE CR1 1169 1207 -370 * 224 344 94 0 chr11 78088868 78089048 -70694424 - L2 LINE L2 -6 3307 3111 443 248 34 8 chr11 78089069 78089186 -70694286 + L2 LINE L2 3152 3271 -1 294 329 28 42 chr11 78089182 78089325 -70694147 - L2 LINE L2 -234 3038 2898 * 716 300 76 16 chr11 78089317 78089620 -70693852 + L3 LINE CR1 1160 1480 -97 1823 114 50 39 chr11 78089762 78090067 -70693405 - AluJb SINE Alu 0 308 1 431 349 107 25 chr11 78090165 78090558 -70692914 - L2 LINE L2 0 3272 2848 319 85 21 0 chr11 78090793 78090840 -70692632 + Alu SINE Alu 2 49 -251 1604 124 25 8 chr11 78090940 78091182 -70692290 - AluY SINE Alu -65 246 1 209 326 101 34 chr11 78091431 78091609 -70691863 - L2 LINE L2 -214 3058 2869 185 320 40 13 chr11 78091649 78091724 -70691748 - MIR SINE MIR -6 256 180 1915 133 7 50 chr11 78091795 78092097 -70691375 - AluSx SINE Alu -23 289 1 252 0 0 0 chr11 78092225 78092253 -70691219 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 373 222 25 0 chr11 78092253 78092334 -70691138 - L2 LINE L2 -13 3300 3218 305 202 160 21 chr11 78095279 78095373 -70688099 - MIR SINE MIR -82 126 20 196 200 0 0 chr11 78095426 78095466 -70688006 + L2 LINE L2 3025 3064 -208 231 282 114 30 chr11 78096962 78097093 -70686379 + MIR SINE MIR 85 226 -36 718 241 35 6 chr11 78097351 78097521 -70685951 + MIR SINE MIR 2 176 -86 312 292 80 0 chr11 78097712 78097825 -70685647 - MIR SINE MIR -58 150 29 2660 43 0 0 chr11 78097984 78098283 -70685189 + AluY SINE Alu 1 299 -12 300 339 46 0 chr11 78098559 78098689 -70684783 - L2 LINE L2 0 3272 3137 570 171 72 0 chr11 78099370 78099481 -70683991 - L2 LINE L2 -7 3306 3188 322 327 45 0 chr11 78099623 78099733 -70683739 - L2 LINE L2 0 3272 3158 695 103 0 0 chr11 78099746 78099843 -70683629 + AluJ/FLAM SINE Alu 4 100 -212 2153 136 3 7 chr11 78099851 78100159 -70683313 - AluSc SINE Alu -2 307 1 22 0 0 0 chr11 78100164 78100186 -70683286 + AT_rich Low_complexity Low_complexity 1 22 0 212 221 15 114 chr11 78100286 78100417 -70683055 - L2 LINE L2 -189 3083 2966 433 284 85 11 chr11 78102985 78103161 -70680311 - MIR SINE MIR 0 262 74 623 300 118 50 chr11 78103224 78103377 -70680095 - L2 LINE L2 0 3313 3172 2373 92 7 3 chr11 78103377 78103682 -70679790 + AluSx SINE Alu 7 312 0 623 300 118 50 chr11 78103682 78103746 -70679726 - L2 LINE L2 -141 3172 3114 2185 106 3 0 chr11 78103746 78104060 -70679412 + AluSx SINE Alu 1 315 0 623 300 118 50 chr11 78104060 78104304 -70679168 - L2 LINE L2 -199 3114 2820 2280 115 0 19 chr11 78104304 78104618 -70678854 + AluSc SINE Alu 1 308 -1 623 300 118 50 chr11 78104618 78104710 -70678762 - L2 LINE L2 -493 2820 2736 676 241 47 97 chr11 78104797 78104864 -70678608 - L2 LINE L2 -563 2751 2682 1995 137 0 4 chr11 78104864 78105170 -70678302 + AluJb SINE Alu 5 309 0 676 241 47 97 chr11 78105170 78105441 -70678031 - L2 LINE L2 -632 2682 2429 221 292 28 0 chr11 78106505 78106577 -70676895 + MIR SINE MIR 19 92 -116 320 274 48 0 chr11 78107036 78107120 -70676352 + MIR SINE MIR 35 122 -140 309 256 43 17 chr11 78107203 78107320 -70676152 - MIR3 SINE MIR -74 134 15 204 175 18 35 chr11 78107373 78107430 -70676042 + C-rich Low_complexity Low_complexity 5 60 0 378 0 0 0 chr11 78107432 78107474 -70675998 + (CA)n Simple_repeat Simple_repeat 2 43 0 349 296 163 25 chr11 78108783 78108986 -70674486 - L3 LINE CR1 -54 1523 1293 450 279 19 45 chr11 78109760 78109914 -70673558 + MIR3 SINE MIR 58 207 -1 742 279 28 9 chr11 78110381 78110596 -70672876 + MIR SINE MIR 31 249 -13 634 309 53 29 chr11 78110898 78111316 -70672156 - L2 LINE L2 -452 2862 2435 589 141 0 0 chr11 78111376 78111468 -70672004 - Tigger7 DNA MER2_type 0 2587 2496 * 3066 176 8 0 chr11 78111467 78111984 -70671488 - Tigger7 DNA MER2_type -1965 522 2 278 296 231 28 chr11 78112003 78112324 -70671148 - L2 LINE L2 -2 3270 2885 351 358 56 44 chr11 78112581 78112902 -70670570 + L2 LINE L2 2862 3186 -86 2400 89 3 0 chr11 78113039 78113341 -70670131 - AluSc SINE Alu -6 303 1 208 326 23 12 chr11 78114056 78114142 -70669330 + MIR SINE MIR 58 144 -64 261 160 200 20 chr11 78114278 78114378 -70669094 - MIR3 SINE MIR 0 208 91 216 271 35 12 chr11 78114445 78114530 -70668942 + L3b LINE CR1 1300 1386 -197 544 322 45 30 chr11 78115150 78115349 -70668123 - MIR3 SINE MIR -6 202 1 1916 167 3 0 chr11 78115462 78115755 -70667717 - AluJo SINE Alu -18 294 1 313 268 12 0 chr11 78116487 78116569 -70666903 - MIR SINE MIR -81 127 45 619 180 0 65 chr11 78116570 78116740 -70666732 - FLAM_A SINE Alu 0 133 1 358 275 14 51 chr11 78116760 78116898 -70666574 + MIR3 SINE MIR 76 208 0 642 250 49 11 chr11 78117365 78117549 -70665923 - MIR SINE MIR -23 239 49 220 262 107 24 chr11 78117735 78117819 -70665653 + MIR3 SINE MIR 15 105 -103 215 279 15 15 chr11 78117939 78118007 -70665465 - MIR SINE MIR -76 132 65 289 307 95 0 chr11 78118016 78118153 -70665319 - MIR SINE MIR -6 256 107 495 253 117 0 chr11 78118297 78118451 -70665021 + MIR SINE MIR 21 192 -70 389 322 6 29 chr11 78119101 78119272 -70664200 + GA-rich Low_complexity Low_complexity 1 167 0 229 143 41 0 chr11 78119404 78119453 -70664019 + (CGG)n Simple_repeat Simple_repeat 1 51 0 224 360 8 40 chr11 78120459 78120584 -70662888 + MIR3 SINE MIR 10 130 -78 2264 86 31 3 chr11 78121261 78121552 -70661920 - AluSq SINE Alu -14 299 1 414 336 117 36 chr11 78121787 78122180 -70661292 + L2 LINE L2 2848 3272 0 1824 114 50 39 chr11 78122278 78122583 -70660889 + AluJb SINE Alu 1 308 0 716 300 76 16 chr11 78122725 78123028 -70660444 - L3 LINE CR1 -97 1480 1160 294 329 28 42 chr11 78123020 78123163 -70660309 + L2 LINE L2 2898 3038 -234 * 443 248 34 8 chr11 78123159 78123276 -70660196 - L2 LINE L2 -1 3271 3152 224 344 94 0 chr11 78123297 78123477 -70659995 + L2 LINE L2 3111 3307 -6 201 158 26 0 chr11 78123475 78123513 -70659959 - L3 LINE CR1 -370 1207 1169 * 1890 197 58 0 chr11 78123695 78124106 -70659366 + MER63B DNA MER1_type 1 435 -1 441 172 140 11 chr11 78124168 78124261 -70659211 + FLAM_A SINE Alu 8 112 -30 324 0 0 0 chr11 78124267 78124303 -70659169 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 315 274 0 14 chr11 78124530 78124603 -70658869 + L2 LINE L2 3242 3313 0 725 257 79 86 chr11 78125107 78125141 -70658331 + L2 LINE L2 2681 2714 -599 2163 157 0 0 chr11 78125141 78125453 -70658019 + AluJb SINE Alu 1 312 0 725 257 79 86 chr11 78125453 78125526 -70657946 + L2 LINE L2 2714 2786 -527 1953 166 0 0 chr11 78125526 78125827 -70657645 + AluJb SINE Alu 5 305 -7 725 257 79 86 chr11 78125827 78126262 -70657210 + L2 LINE L2 2786 3216 -97 773 153 0 44 chr11 78126262 78126399 -70657073 - FLAM_C SINE Alu -1 132 2 725 257 79 86 chr11 78126399 78126465 -70657007 + L2 LINE L2 3216 3281 -32 288 362 79 0 chr11 78127446 78127573 -70655899 + L2 LINE L2 3127 3263 -9 473 286 27 60 chr11 78127782 78127967 -70655505 + MIR3 SINE MIR 23 201 -7 25 31 0 0 chr11 78128690 78128722 -70654750 + AT_rich Low_complexity Low_complexity 1 32 0 3471 50 0 0 chr11 78128726 78129143 -70654329 - L1PA5 LINE L1 -1 6153 5737 237 61 0 61 chr11 78129203 78129252 -70654220 + L1MA8 LINE L1 6246 6291 0 2263 106 0 10 chr11 78129253 78129555 -70653917 + AluSg SINE Alu 1 299 -11 2503 83 0 3 chr11 78129753 78130065 -70653407 + AluY SINE Alu 1 311 0 363 222 25 0 chr11 78130253 78130334 -70653138 + L2 LINE L2 3218 3300 -13 252 0 0 0 chr11 78130334 78130362 -70653110 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 1976 138 3 49 chr11 78130490 78130815 -70652657 + AluSx SINE Alu 1 310 -2 194 293 0 0 chr11 78130892 78130933 -70652539 + L2 LINE L2 3254 3294 -19 195 309 107 39 chr11 78130980 78131158 -70652314 + L2 LINE L2 2869 3058 -214 2620 46 20 0 chr11 78131408 78131713 -70651759 + AluY SINE Alu 1 311 0 232 221 69 99 chr11 78132815 78132946 -70650526 - LTR67 LTR ERVL -391 166 40 2136 151 3 0 chr11 78132948 78133259 -70650213 + AluJb SINE Alu 1 312 0 297 75 0 0 chr11 78133259 78133299 -70650173 + (GGAA)n Simple_repeat Simple_repeat 4 43 0 214 241 176 19 chr11 78133612 78133720 -70649752 - MER5A DNA MER1_type -48 139 6 231 36 0 0 chr11 78133727 78133755 -70649717 + (T)n Simple_repeat Simple_repeat 1 28 0 2469 61 0 0 chr11 78134282 78134575 -70648897 - AluY SINE Alu -18 293 1 446 272 48 8 chr11 78134575 78134700 -70648772 - MIR3 SINE MIR -54 154 25 1810 135 69 0 chr11 78135243 78135517 -70647955 - AluJb SINE Alu -19 293 1 625 265 188 30 chr11 78135821 78136417 -70647055 - L2 LINE L2 -634 2680 1991 21 0 0 0 chr11 78137001 78137022 -70646450 + GC_rich Low_complexity Low_complexity 1 21 0 192 158 0 0 chr11 78137092 78137130 -70646342 + (CCG)n Simple_repeat Simple_repeat 1 38 0 23 101 0 0 chr11 78137220 78137299 -70646173 + GC_rich Low_complexity Low_complexity 1 79 0 27 49 0 0 chr11 78137363 78137404 -70646068 + GC_rich Low_complexity Low_complexity 1 41 0 1932 93 7 29 chr11 78138650 78138929 -70644543 - AluSg SINE Alu -2 308 36 2171 105 16 7 chr11 78138929 78139233 -70644239 - AluSx SINE Alu -4 308 1 520 128 64 0 chr11 78139245 78139339 -70644133 - MIR SINE MIR -74 188 89 25 0 0 0 chr11 78139926 78139951 -70643521 + AT_rich Low_complexity Low_complexity 1 25 0 2398 84 6 13 chr11 78140014 78140325 -70643147 + AluSc SINE Alu 1 309 0 2065 120 7 10 chr11 78140376 78140675 -70642797 + AluSx SINE Alu 1 298 -14 514 203 201 26 chr11 78140732 78140972 -70642500 - L1MC4a LINE L1 -311 5810 5665 26 0 0 0 chr11 78141015 78141041 -70642431 + AT_rich Low_complexity Low_complexity 1 26 0 2333 75 7 3 chr11 78141041 78141333 -70642139 - AluSp SINE Alu -20 293 1 248 214 0 0 chr11 78141345 78141401 -70642071 - MIR3 SINE MIR -49 159 103 390 167 0 26 chr11 78141563 78141641 -70641831 + MADE1 DNA Mariner 2 77 -3 261 272 117 10 chr11 78142154 78142257 -70641215 - L2 LINE L2 -8 3305 3192 2165 117 3 0 chr11 78142604 78142903 -70640569 + AluSx SINE Alu 1 300 -12 467 344 106 22 chr11 78143515 78144171 -70639301 - L2 LINE L2 -5 3267 2557 201 254 143 0 chr11 78144179 78144242 -70639230 - L2 LINE L2 0 3272 3201 679 225 150 15 chr11 78144407 78144607 -70638865 + MIR SINE MIR 33 259 -3 37633 30 1 2 chr11 78145062 78146571 -70636901 - L1PA2 LINE L1 0 6155 4646 2649 24 0 10 chr11 78146571 78146869 -70636603 - AluYa5 SINE Alu -16 295 1 37633 30 1 2 chr11 78146869 78150612 -70632860 - L1PA2 LINE L1 -1509 4646 908 735 12 0 0 chr11 78150612 78150694 -70632778 - L1PA2 LINE L1 -6050 96 15 324 283 0 0 chr11 78150699 78150791 -70632681 + L1MC4a LINE L1 94 185 -5934 1518 293 109 46 chr11 78150794 78151908 -70631564 + L1MC4a LINE L1 69 1252 -4867 911 210 0 0 chr11 78151913 78152075 -70631397 - FRAM SINE Alu -3 163 2 1761 128 64 20 chr11 78152318 78152616 -70630856 + AluSp SINE Alu 2 312 -1 1822 161 18 0 chr11 78152997 78153276 -70630196 + AluJb SINE Alu 1 284 -28 304 262 90 51 chr11 78153326 78153581 -70629891 + L1MC4a LINE L1 2628 2888 -3241 2294 81 16 38 chr11 78153584 78153904 -70629568 + AluSq SINE Alu 1 313 0 614 244 154 32 chr11 78153920 78154322 -70629150 + L1MC4a LINE L1 3049 3499 -2630 * 1391 176 130 59 chr11 78154320 78154826 -70628646 + L1MC5 LINE L1 7384 7925 -36 825 159 8 8 chr11 78155072 78155204 -70628268 - FLAM_C SINE Alu -10 133 2 528 259 64 34 chr11 78155204 78155440 -70628032 + L1MC4a LINE L1 3698 3940 -2189 1591 155 56 43 chr11 78155463 78155624 -70627848 - AluSx SINE Alu -4 308 140 2152 65 0 29 chr11 78155624 78155902 -70627570 - AluY SINE Alu -1 310 41 1591 155 56 43 chr11 78155902 78156044 -70627428 - AluSx SINE Alu -172 140 1 545 291 132 28 chr11 78156095 78156390 -70627082 + L1MC4a LINE L1 4655 4918 -1235 2190 128 0 0 chr11 78156390 78156688 -70626784 + AluSx SINE Alu 1 298 -14 545 291 132 28 chr11 78156688 78156828 -70626644 + L1MC4a LINE L1 4918 5042 -1111 1659 152 59 10 chr11 78156828 78157118 -70626354 + AluJo SINE Alu 1 304 -8 545 291 132 28 chr11 78157118 78157808 -70625664 + L1MC4a LINE L1 5042 5760 -393 1595 178 22 7 chr11 78157882 78158157 -70625315 - AluJb SINE Alu -33 279 1 2263 108 0 6 chr11 78158859 78159173 -70624299 - AluSx SINE Alu 0 312 1 742 166 120 83 chr11 78159336 78159499 -70623973 + MER46B DNA MER2_type 3 52 -2679 1747 162 7 7 chr11 78159499 78159783 -70623689 + AluJo SINE Alu 13 296 -16 742 166 120 83 chr11 78159783 78159836 -70623636 + MER46B DNA MER2_type 52 102 -134 609 152 0 0 chr11 78159837 78159929 -70623543 + AluJ/FLAM SINE Alu 2 93 -219 1775 215 99 7 chr11 78159929 78160385 -70623087 + L1M4 LINE L1 3665 4162 -1984 379 311 47 55 chr11 78160845 78161225 -70622247 + L2 LINE L2 2819 3195 -77 393 255 135 34 chr11 78162065 78162273 -70621199 - MIR SINE MIR -11 251 23 207 213 43 0 chr11 78163627 78163674 -70619798 + MIR SINE MIR 87 135 -73 782 113 73 0 chr11 78164178 78164302 -70619170 - FLAM_C SINE Alu 0 133 1 584 223 22 119 chr11 78164700 78164969 -70618503 - MIR SINE MIR -2 260 18 398 254 42 0 chr11 78165118 78165291 -70618181 + MIR SINE MIR 4 183 -79 482 225 158 0 chr11 78166484 78166604 -70616868 - L2 LINE L2 0 3272 3134 941 272 81 62 chr11 78166769 78167203 -70616269 + MLT1J2 LTR MaLR 1 442 -8 722 288 83 25 chr11 78167466 78167827 -70615645 - L2 LINE L2 -818 2496 2115 1569 199 42 3 chr11 78167840 78168151 -70615321 - MER58B DNA MER1_type 0 341 19 360 246 65 72 chr11 78168139 78168205 -70615267 + MER58A DNA MER1_type 19 84 -257 * 2075 95 9 95 chr11 78168205 78168542 -70614930 + AluSq SINE Alu 1 308 -5 360 246 65 72 chr11 78168542 78168613 -70614859 + MER58A DNA MER1_type 84 155 -69 2083 115 17 0 chr11 78169320 78169615 -70613857 + AluSg SINE Alu 1 300 -10 377 245 122 64 chr11 78169617 78169805 -70613667 - L2 LINE L2 0 3313 3115 888 242 75 20 chr11 78169841 78170147 -70613325 + L1MCc LINE L1 51 373 -6050 353 319 98 12 chr11 78170151 78170314 -70613158 + L1MCc LINE L1 411 587 -5836 867 208 79 53 chr11 78170416 78170681 -70612791 + L1MCc LINE L1 807 1078 -5345 3079 221 83 16 chr11 78170688 78171641 -70611831 + L1MCc LINE L1 3005 4021 -2920 996 178 69 5 chr11 78171710 78171912 -70611560 + L1 LINE L1 4836 5050 -1096 583 283 79 57 chr11 78172076 78172443 -70611029 + L2 LINE L2 2934 3308 -5 477 221 63 16 chr11 78174101 78174228 -70609244 + MLT1H LTR MaLR 1 133 -416 1338 250 114 76 chr11 78174240 78174674 -70608798 + MER21B LTR ERV1 13 480 -383 3751 122 2 4 chr11 78174674 78175200 -70608272 + MER1A DNA MER1_type 3 527 0 1338 250 114 76 chr11 78175200 78175406 -70608066 + MER21B LTR ERV1 480 677 -186 420 266 199 23 chr11 78175472 78175728 -70607744 + MLT1H LTR MaLR 131 431 -118 217 327 0 0 chr11 78176270 78176325 -70607147 + L2 LINE L2 3215 3269 -3 348 309 33 39 chr11 78176668 78176849 -70606623 + L2 LINE L2 2753 2932 -382 930 353 2 22 chr11 78177818 78178235 -70605237 + L1M3a LINE L1 15 423 -5532 2303 235 41 82 chr11 78179273 78179704 -70603768 + L1M3f LINE L1 555 946 -4521 1905 169 0 6 chr11 78179704 78180018 -70603454 - AluJo SINE Alu 0 312 1 2303 235 41 82 chr11 78180018 78180427 -70603045 + L1M3f LINE L1 946 1370 -4097 5830 234 61 36 chr11 78180559 78181380 -70602092 + L1PA15 LINE L1 994 1793 -4353 2039 140 13 7 chr11 78181380 78181680 -70601792 - AluSx SINE Alu -10 302 1 5830 234 61 36 chr11 78181680 78182778 -70600694 + L1PA15 LINE L1 1793 2961 -3185 1255 227 21 86 chr11 78182778 78183196 -70600276 + LTR9 LTR ERV1 1 391 -221 733 244 98 29 chr11 78183174 78183449 -70600023 + LTR19C LTR ERV1 486 779 0 * 4587 193 49 10 chr11 78183462 78184959 -70598513 + HUERS-P3 LTR ERV1 15 1652 -7267 * 35639 115 18 11 chr11 78184956 78187419 -70596053 + HUERS-P3 LTR ERV1 1791 4237 -4682 2438 72 10 3 chr11 78187419 78187726 -70595746 + AluSc SINE Alu 1 309 0 35639 115 18 11 chr11 78187726 78189060 -70594412 + HUERS-P3 LTR ERV1 4237 5561 -3358 1822 144 36 7 chr11 78189060 78189338 -70594134 + AluSx SINE Alu 1 286 -26 35639 115 18 11 chr11 78189338 78190629 -70592843 + HUERS-P3 LTR ERV1 5561 6912 -2007 43452 32 22 9 chr11 78190930 78196998 -70586474 - L1PA2 LINE L1 -2 6153 7 1490 166 19 12 chr11 78197013 78197272 -70586200 + HUERS-P3 LTR ERV1 8659 8919 0 1527 189 31 134 chr11 78197274 78197381 -70586091 + LTR9 LTR ERV1 1 117 -495 1535 125 0 5 chr11 78197381 78197589 -70585883 + AluSx SINE Alu 1 207 -105 1527 189 31 134 chr11 78197589 78198214 -70585258 + LTR9 LTR ERV1 117 612 0 11859 189 15 12 chr11 78198214 78198457 -70585015 + L1PA15 LINE L1 2958 3199 -2947 1814 171 0 0 chr11 78198457 78198744 -70584728 + AluJb SINE Alu 11 297 -15 11859 189 15 12 chr11 78198744 78200900 -70582572 + L1PA15 LINE L1 3199 5363 -783 44129 47 4 0 chr11 78200903 78207031 -70576441 + L1PA4 LINE L1 2 6154 -1 5240 119 1 39 chr11 78207064 78207871 -70575601 + L1PA15 LINE L1 5352 6127 -38 1772 149 109 46 chr11 78207871 78208220 -70575252 - THE1C LTR MaLR -4 371 1 5240 119 1 39 chr11 78208220 78208251 -70575221 + L1PA15 LINE L1 6127 6158 -7 19566 145 45 24 chr11 78208444 78213428 -70570044 + L1MA2 LINE L1 6 4887 -2836 1665 100 0 4 chr11 78213428 78213659 -70569813 + AluSq SINE Alu 83 312 -1 19566 145 45 24 chr11 78213659 78213765 -70569707 + L1MA2 LINE L1 4887 4989 -2734 2378 91 3 0 chr11 78213765 78214062 -70569410 + AluSp SINE Alu 1 298 -15 19566 145 45 24 chr11 78214062 78216460 -70567012 + L1MA2 LINE L1 4989 7720 -3 787 306 29 71 chr11 78216483 78216886 -70566586 + L1ME3 LINE L1 5440 5818 -344 2349 90 0 0 chr11 78216886 78217185 -70566287 + AluY SINE Alu 1 299 -12 787 306 29 71 chr11 78217185 78217304 -70566168 + L1ME3 LINE L1 5818 5940 -222 22 0 0 0 chr11 78217591 78217613 -70565859 + AT_rich Low_complexity Low_complexity 1 22 0 800 160 7 21 chr11 78217799 78217943 -70565529 + FRAM SINE Alu 24 165 -11 400 265 95 85 chr11 78218212 78218495 -70564977 + L1M4 LINE L1 2335 2620 -3526 742 170 126 0 chr11 78218530 78218665 -70564807 - AluJo/FRAM SINE Alu -14 288 137 804 182 94 29 chr11 78218668 78218838 -70564634 - AluJo SINE Alu -15 297 117 1652 226 106 35 chr11 78218844 78219352 -70564120 + LTR50 LTR ERVL 35 578 -217 721 272 93 4 chr11 78219353 78219632 -70563840 + L1M4 LINE L1 3504 3807 -2339 580 243 97 11 chr11 78220005 78220190 -70563282 + MIR SINE MIR 56 256 -6 372 320 0 19 chr11 78220435 78220538 -70562934 - MIR SINE MIR -75 133 33 510 289 178 5 chr11 78221619 78221827 -70561645 - MIR SINE MIR -6 256 13 222 302 27 60 chr11 78223347 78223496 -70559976 + MIR SINE MIR 4 149 -59 531 280 142 76 chr11 78223528 78223817 -70559655 + L3 LINE CR1 748 1055 -522 322 357 68 24 chr11 78223986 78224280 -70559192 - L2 LINE L2 -412 2902 2596 190 312 71 29 chr11 78224530 78224700 -70558772 - L2 LINE L2 -1122 2192 2016 913 157 0 0 chr11 78224707 78224841 -70558631 - FLAM_C SINE Alu -9 134 1 797 178 0 8 chr11 78225039 78225168 -70558304 - FLAM_A SINE Alu -2 131 4 284 313 135 53 chr11 78225281 78225636 -70557836 + L1MEd LINE L1 209 592 -5527 302 320 41 48 chr11 78225684 78225831 -70557641 + L1ME LINE L1 41 186 -5884 254 314 29 0 chr11 78226108 78226210 -70557262 + ERVL LTR ERVL 1686 1790 -3974 879 192 6 0 chr11 78226215 78226382 -70557090 - MER3 DNA MER1_type -87 122 2 2867 281 121 110 chr11 78226383 78227438 -70556034 + ERVL LTR ERVL 1965 3007 -2757 2270 114 0 3 chr11 78227438 78227746 -70555726 - AluSx SINE Alu -1 311 5 2867 281 121 110 chr11 78227746 78227967 -70555505 + ERVL LTR ERVL 3007 3224 -2540 476 250 23 8 chr11 78227967 78228099 -70555373 - MER94 DNA DNA 0 134 1 2867 281 121 110 chr11 78228099 78229150 -70554322 + ERVL LTR ERVL 3224 4450 -1314 9783 157 38 37 chr11 78229150 78231000 -70552472 - L1M4c LINE L1 -4514 1870 19 1751 296 37 22 chr11 78231101 78231742 -70551730 + ERVL LTR ERVL 4748 5398 -366 243 0 0 0 chr11 78231765 78231792 -70551680 + (TG)n Simple_repeat Simple_repeat 1 27 0 345 294 64 32 chr11 78232084 78232302 -70551170 + LTR50 LTR ERVL 2 226 -569 835 169 41 102 chr11 78232600 78232895 -70550577 + L1MC5 LINE L1 7661 7937 -24 241 237 0 0 chr11 78232947 78233006 -70550466 + LTR33A LTR ERVL 460 518 -5 21 0 0 0 chr11 78233472 78233493 -70549979 + AT_rich Low_complexity Low_complexity 1 21 0 713 219 11 22 chr11 78233576 78233754 -70549718 + MLT1K LTR MaLR 410 585 -3 1078 240 24 8 chr11 78234048 78234302 -70549170 + MIR SINE MIR 3 260 -2 184 374 114 8 chr11 78235066 78235197 -70548275 + L2 LINE L2 2922 3066 -206 185 194 28 0 chr11 78235279 78235315 -70548157 + MIR SINE MIR 198 234 -28 * 188 143 0 0 chr11 78235289 78235317 -70548155 + L2 LINE L2 3213 3240 -32 180 230 135 40 chr11 78235323 78235397 -70548075 + MIR SINE MIR 23 103 -105 * 228 329 0 0 chr11 78235377 78235447 -70548025 + L2 LINE L2 3198 3267 -5 2336 99 0 0 chr11 78235454 78235756 -70547716 + AluY SINE Alu 10 311 0 291 211 173 0 chr11 78236212 78236298 -70547174 + MIR SINE MIR 45 149 -66 418 359 37 28 chr11 78236526 78236743 -70546729 - L2 LINE L2 -183 3089 2871 426 385 45 16 chr11 78237000 78237244 -70546228 + L2 LINE L2 2644 2894 -420 1389 144 48 48 chr11 78237308 78237578 -70545894 - AluJo SINE Alu -11 301 32 1353 125 35 45 chr11 78237690 78238002 -70545470 + AluSc SINE Alu 1 309 0 2208 118 3 0 chr11 78238054 78238351 -70545121 + AluSx SINE Alu 1 298 -14 563 216 202 22 chr11 78238408 78238647 -70544825 - L1MC4a LINE L1 -311 5810 5665 26 0 0 0 chr11 78238690 78238716 -70544756 + AT_rich Low_complexity Low_complexity 1 26 0 2274 78 7 7 chr11 78238716 78239009 -70544463 - AluSp SINE Alu -20 293 1 190 286 0 36 chr11 78239021 78239077 -70544395 - MIR3 SINE MIR -49 159 106 2568 37 3 0 chr11 78239341 78239637 -70543835 + AluY SINE Alu 3 299 -12 885 114 34 165 chr11 78239650 78239697 -70543775 + MER58B DNA MER1_type 135 187 -2233 2024 125 14 0 chr11 78239697 78239985 -70543487 + AluSx SINE Alu 1 292 -20 885 114 34 165 chr11 78239985 78240173 -70543299 + MER58B DNA MER1_type 187 339 -2 246 293 91 0 chr11 78240295 78240394 -70543078 - MIR SINE MIR -68 140 33 550 296 75 35 chr11 78242692 78242918 -70540554 - MIR SINE MIR -2 260 26 472 262 96 14 chr11 78242992 78243276 -70540196 - L1MC4a LINE L1 -76 6045 5734 494 318 109 22 chr11 78243917 78244191 -70539281 - L1MC4a LINE L1 -2155 5653 5356 317 286 28 67 chr11 78244352 78244607 -70538865 + L2 LINE L2 2462 2706 -608 320 326 65 79 chr11 78244761 78245101 -70538371 + L2 LINE L2 2932 3266 -6 1810 173 0 10 chr11 78245941 78246253 -70537219 - AluJb SINE Alu -3 309 1 252 0 0 0 chr11 78246278 78246306 -70537166 + (TG)n Simple_repeat Simple_repeat 2 29 0 862 280 107 26 chr11 78246436 78246481 -70536991 - L1ME3 LINE L1 -296 5866 5826 2237 128 0 0 chr11 78246481 78246779 -70536693 - AluSx SINE Alu -14 298 1 862 280 107 26 chr11 78246779 78247381 -70536091 - L1ME3 LINE L1 -336 5826 5154 468 239 65 128 chr11 78247421 78247727 -70535745 + L2 LINE L2 2986 3272 0 195 42 0 0 chr11 78248406 78248430 -70535042 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2012 109 7 4 chr11 78248435 78248711 -70534761 - AluSg1 SINE Alu -32 277 1 389 20 20 0 chr11 78249143 78249193 -70534279 + (TTCA)n Simple_repeat Simple_repeat 2 52 0 407 251 52 91 chr11 78249199 78249430 -70534042 - MIR SINE MIR -30 232 11 356 351 41 63 chr11 78249519 78249787 -70533685 - L2 LINE L2 -15 3257 2996 252 306 99 16 chr11 78249867 78249988 -70533484 - L2 LINE L2 -470 2844 2714 774 308 71 28 chr11 78250176 78250598 -70532874 + MLT1L LTR MaLR 119 558 -57 533 305 78 35 chr11 78250605 78250949 -70532523 - L2 LINE L2 -684 2630 2272 533 264 22 71 chr11 78251678 78251860 -70531612 + MIR SINE MIR 11 183 -79 215 296 61 31 chr11 78252394 78252492 -70530980 - MIR SINE MIR -71 191 91 510 309 33 29 chr11 78252890 78253100 -70530372 + L2 LINE L2 3098 3308 -5 22 80 0 0 chr11 78253220 78253270 -70530202 + AT_rich Low_complexity Low_complexity 1 50 0 394 89 0 0 chr11 78253628 78253684 -70529788 - L1MC4a LINE L1 -613 7195 7140 1970 168 10 48 chr11 78253684 78254076 -70529396 + MLT2C1 LTR ERVL 1 377 -20 2373 187 80 20 chr11 78254111 78254229 -70529243 - L1MC4a LINE L1 -663 7145 7035 2247 117 0 0 chr11 78254229 78254527 -70528945 + AluSx SINE Alu 1 298 -14 2373 187 80 20 chr11 78254527 78254990 -70528482 - L1MC4a LINE L1 -773 7035 6592 393 138 0 0 chr11 78254990 78255070 -70528402 + (GA)n Simple_repeat Simple_repeat 1 80 0 670 230 170 5 chr11 78256278 78256478 -70526994 + MIR SINE MIR 20 252 -10 182 299 154 60 chr11 78256590 78256941 -70526531 - L2 LINE L2 -337 2977 2594 213 296 0 14 chr11 78256961 78257032 -70526440 + GA-rich Low_complexity Low_complexity 2 71 0 956 191 77 10 chr11 78257072 78257266 -70526206 + AluJb SINE Alu 86 292 -20 319 254 27 55 chr11 78257626 78257736 -70525736 + MER96 DNA MER1_type? 1 107 -68 759 256 105 0 chr11 78257768 78257959 -70525513 + MIR SINE MIR 23 233 -29 748 278 88 29 chr11 78258593 78258682 -70524790 - MER102b DNA MER1_type -1088 340 258 285 29 0 0 chr11 78258682 78258716 -70524756 + (TG)n Simple_repeat Simple_repeat 2 35 0 180 0 0 0 chr11 78258717 78258737 -70524735 + (GA)n Simple_repeat Simple_repeat 2 21 0 748 278 88 29 chr11 78258737 78258951 -70524521 - MER102b DNA MER1_type -1169 259 17 1704 162 0 22 chr11 78258952 78259230 -70524242 - AluJb SINE Alu -1 311 40 220 294 44 88 chr11 78259514 78259650 -70523822 + L2 LINE L2 3143 3272 0 212 333 0 0 chr11 78259829 78259886 -70523586 + L2 LINE L2 3172 3228 -44 336 273 67 48 chr11 78260424 78260633 -70522839 + L1M4 LINE L1 5041 5253 -893 1711 151 72 3 chr11 78261100 78261391 -70522081 - AluJb SINE Alu -1 311 1 2279 141 32 19 chr11 78261418 78261788 -70521684 + THE1C LTR MaLR 1 375 0 248 277 16 125 chr11 78261791 78261897 -70521575 + L2 LINE L2 3100 3179 -93 2428 55 0 0 chr11 78261897 78262186 -70521286 - AluY SINE Alu -9 302 14 248 277 16 125 chr11 78262186 78262263 -70521209 + L2 LINE L2 3179 3263 -9 193 333 0 0 chr11 78262333 78262390 -70521082 - L2 LINE L2 -219 3053 2997 2107 129 0 38 chr11 78262392 78262710 -70520762 + AluSx SINE Alu 1 306 -6 1727 71 53 0 chr11 78262936 78263161 -70520311 - AluSq SINE Alu -76 237 1 410 271 17 8 chr11 78263173 78263291 -70520181 + L2 LINE L2 3187 3305 -8 211 318 191 0 chr11 78263379 78263489 -70519983 + L2 LINE L2 3142 3272 0 182 307 227 0 chr11 78263559 78263647 -70519825 + L2 LINE L2 3163 3270 -2 214 301 10 48 chr11 78263796 78263899 -70519573 + MIR SINE MIR 158 256 -6 399 266 32 70 chr11 78265329 78265487 -70517985 + MIR3 SINE MIR 43 194 -14 1328 195 52 38 chr11 78265709 78265996 -70517476 - AluJo SINE Alu -21 291 1 278 310 74 17 chr11 78266278 78266450 -70517022 + MIR SINE MIR 20 206 -56 2317 83 7 0 chr11 78266677 78266977 -70516495 + AluSp SINE Alu 1 302 -11 259 301 63 15 chr11 78267346 78267373 -70516099 + MIR SINE MIR 45 69 -188 652 75 0 0 chr11 78267373 78267453 -70516019 - MADE1 DNA Mariner 0 80 1 259 301 63 15 chr11 78267453 78267563 -70515909 + MIR SINE MIR 69 189 -68 872 176 0 0 chr11 78267622 78267764 -70515708 - FLAM_C SINE Alu -1 142 1 1935 109 80 0 chr11 78268365 78268640 -70514832 - AluSx SINE Alu -15 297 1 196 269 0 19 chr11 78269259 78269311 -70514161 + MIR3 SINE MIR 151 201 -7 383 308 119 19 chr11 78269368 78269527 -70513945 - MIR3 SINE MIR -30 178 4 208 413 0 0 chr11 78269586 78269661 -70513811 + MIR SINE MIR 24 98 -110 4576 176 45 12 chr11 78269869 78270861 -70512611 + L1MB7 LINE L1 5144 6165 -19 342 0 0 0 chr11 78270999 78271037 -70512435 + (TA)n Simple_repeat Simple_repeat 2 39 0 2490 277 132 23 chr11 78271088 78272340 -70511132 + L2 LINE L2 1901 3308 -5 22 35 0 0 chr11 78272371 78272400 -70511072 + AT_rich Low_complexity Low_complexity 1 29 0 323 312 170 47 chr11 78273783 78274213 -70509259 + L2 LINE L2 2379 2861 -453 1662 173 3 39 chr11 78274541 78274853 -70508619 - AluJo SINE Alu -11 301 1 1902 117 4 4 chr11 78275231 78275488 -70507984 + AluSx SINE Alu 34 290 -22 638 284 69 5 chr11 78275826 78276030 -70507442 + MIR SINE MIR 46 262 0 186 250 280 20 chr11 78276219 78276319 -70507153 - L2 LINE L2 -50 3263 3138 633 266 31 44 chr11 78276342 78276571 -70506901 - MIR SINE MIR -3 259 34 1826 135 48 10 chr11 78276665 78276979 -70506493 - AluSx SINE Alu 0 312 1 182 250 217 0 chr11 78277152 78277212 -70506260 + MIR SINE MIR 63 135 -127 979 200 27 64 chr11 78277356 78277576 -70505896 - MER68 LTR ERV1 -350 212 1 696 194 0 16 chr11 78278683 78278852 -70504620 - FLAM_A SINE Alu 0 142 8 601 233 80 7 chr11 78279231 78279381 -70504091 - L1MC/D LINE L1 -2021 5787 5627 282 89 133 0 chr11 78279995 78280040 -70503432 - MER66B LTR ERV1 -141 345 295 736 0 0 73 chr11 78280442 78280538 -70502934 + L1PA4 LINE L1 6067 6155 0 186 250 0 0 chr11 78280588 78280628 -70502844 + L3b LINE CR1 1198 1237 -346 602 304 99 42 chr11 78281849 78281909 -70501563 + MARNA DNA Mariner 92 147 -439 1532 186 77 3 chr11 78281909 78282194 -70501278 - AluJo SINE Alu -6 306 1 602 304 99 42 chr11 78282194 78282538 -70500934 + MARNA DNA Mariner 147 519 -67 298 283 124 28 chr11 78282418 78282563 -70500909 - MARNA DNA Mariner -396 190 32 * 1843 161 7 0 chr11 78282621 78282912 -70500560 + AluSx SINE Alu 2 294 -18 1142 158 23 0 chr11 78282925 78283096 -70500376 + AluJb SINE Alu 118 292 -20 257 325 139 18 chr11 78283131 78283297 -70500175 - MIR SINE MIR -74 188 3 729 92 31 0 chr11 78283347 78283445 -70500027 - U6 snRNA snRNA -6 101 1 1729 145 3 99 chr11 78283462 78283662 -70499810 - AluSx SINE Alu 0 312 157 2171 111 3 32 chr11 78283662 78283977 -70499495 - AluSx SINE Alu -6 306 1 1729 145 3 99 chr11 78283977 78284121 -70499351 - AluSx SINE Alu -155 157 1 183 363 12 0 chr11 78284125 78284205 -70499267 + MIR SINE MIR 175 255 -7 237 358 0 0 chr11 78285333 78285414 -70498058 + MIR SINE MIR 45 125 -83 281 323 19 2 chr11 78285464 78285642 -70497830 - MIR SINE MIR 0 262 45 2941 157 78 47 chr11 78285992 78286637 -70496835 - L1MB8 LINE L1 0 6178 5514 1945 116 14 7 chr11 78287239 78287531 -70495941 - AluSq SINE Alu -19 294 1 205 283 81 30 chr11 78287794 78287893 -70495579 + L2 LINE L2 244 347 -2967 31 26 0 0 chr11 78288033 78288071 -70495401 + AT_rich Low_complexity Low_complexity 1 38 0 901 37 0 0 chr11 78288107 78288215 -70495257 + L1HS LINE L1 5866 5973 -182 2734 247 387 19 chr11 78288215 78289776 -70493696 + L2 LINE L2 335 1321 -1992 2406 92 0 0 chr11 78289776 78290080 -70493392 - AluY SINE Alu -7 304 1 2734 247 387 19 chr11 78290080 78290669 -70492803 + L2 LINE L2 1321 3312 -1 1053 187 120 8 chr11 78293055 78293299 -70490173 - MIR SINE MIR 0 262 1 1404 113 29 0 chr11 78293653 78293857 -70489615 + MER2 DNA MER2_type 1 210 -135 37 23 0 0 chr11 78293857 78293901 -70489571 + AT_rich Low_complexity Low_complexity 1 44 0 2264 97 7 3 chr11 78294191 78294490 -70488982 + AluSq SINE Alu 1 300 -13 198 337 101 11 chr11 78294755 78294844 -70488628 + MIR SINE MIR 34 130 -78 283 51 26 0 chr11 78295817 78295856 -70487616 - Charlie4 DNA MER1_type -53 1908 1869 820 280 34 13 chr11 78295862 78296098 -70487374 + HERVL40 LTR ERVL 170 410 -5120 1191 199 29 107 chr11 78296134 78296480 -70486992 + HERVL40 LTR ERVL 415 733 -4797 1054 206 71 43 chr11 78296480 78296891 -70486581 + LTR40a LTR ERVL 3 500 -2 305 263 70 26 chr11 78296894 78297008 -70486464 + HERVL40 LTR ERVL 1 119 -5411 283 219 96 0 chr11 78297338 78297411 -70486061 + HERVL40 LTR ERVL 1098 1177 -4353 313 234 80 58 chr11 78297518 78297655 -70485817 - LTR40c LTR ERVL -325 140 1 280 225 28 28 chr11 78298253 78298324 -70485148 + HERVL40 LTR ERVL 19 89 -5441 275 210 65 0 chr11 78298326 78298388 -70485084 + HERVL40 LTR ERVL 1422 1487 -4043 315 292 90 54 chr11 78298728 78299005 -70484467 + HERVL40 LTR ERVL 4387 4673 -350 * 923 254 60 34 chr11 78298982 78299321 -70484151 + HERVL40 LTR ERVL 2785 5530 0 1799 196 154 10 chr11 78299322 78299725 -70483747 + LTR40b LTR ERVL 2 462 0 223 324 95 56 chr11 78299905 78300084 -70483388 - L2 LINE L2 -100 3172 2987 * 451 204 46 9 chr11 78300081 78300189 -70483283 - MIR SINE MIR -119 143 32 223 218 18 0 chr11 78300567 78300622 -70482850 + (TA)n Simple_repeat Simple_repeat 2 57 0 22 0 0 0 chr11 78300624 78300646 -70482826 + AT_rich Low_complexity Low_complexity 1 22 0 495 247 160 15 chr11 78300683 78300720 -70482752 - L1ME3A LINE L1 -222 5948 5918 1702 222 97 40 chr11 78300720 78301248 -70482224 - MER68 LTR ERV1 -4 558 1 495 247 160 15 chr11 78301248 78301586 -70481886 - L1ME3A LINE L1 -252 5918 5526 433 304 27 5 chr11 78301841 78302065 -70481407 - L1ME3A LINE L1 -2898 3248 3020 376 278 60 0 chr11 78302065 78302198 -70481274 - LTR16C LTR ERVL -1 490 350 1091 220 144 75 chr11 78302204 78302699 -70480773 - L1MC5 LINE L1 -733 7228 6751 2525 59 0 0 chr11 78302699 78303004 -70480468 + AluY SINE Alu 2 306 -5 1091 220 144 75 chr11 78303004 78303057 -70480415 - L1MC5 LINE L1 -1210 6751 6703 180 0 0 0 chr11 78303057 78303077 -70480395 + (T)n Simple_repeat Simple_repeat 1 20 0 509 204 53 0 chr11 78303099 78303212 -70480260 - L1MC4a LINE L1 -934 6874 6756 823 199 0 0 chr11 78303342 78303493 -70479979 - FRAM SINE Alu -25 151 1 218 246 18 0 chr11 78303627 78303684 -70479788 + (TA)n Simple_repeat Simple_repeat 2 59 0 334 268 57 57 chr11 78304585 78304742 -70478730 + MIR3 SINE MIR 17 173 -35 212 151 0 94 chr11 78304739 78304792 -70478680 + L2 LINE L2 3266 3313 0 * 347 201 326 0 chr11 78304883 78304994 -70478478 - MIR SINE MIR -62 146 20 372 321 66 0 chr11 78305337 78305474 -70477998 - MIR SINE MIR -79 183 38 2150 120 0 10 chr11 78305519 78305819 -70477653 - AluSx SINE Alu -15 297 1 356 269 179 13 chr11 78306233 78306389 -70477083 - MIR SINE MIR 0 262 81 283 359 83 31 chr11 78306815 78307108 -70476364 + L2 LINE L2 2709 3022 -250 833 257 156 9 chr11 78307115 78307430 -70476042 - L2 LINE L2 0 3313 2953 485 303 69 7 chr11 78307576 78307721 -70475751 + L2 LINE L2 3115 3268 -4 519 134 80 36 chr11 78307931 78307958 -70475514 + L1MEd LINE L1 69 93 -6026 2286 92 3 3 chr11 78307958 78308261 -70475211 + AluSq SINE Alu 1 303 -10 519 134 80 36 chr11 78308261 78308345 -70475127 + L1MEd LINE L1 93 185 -5934 2400 80 0 3 chr11 78308480 78308781 -70474691 - AluY SINE Alu -11 300 1 2568 125 82 0 chr11 78308895 78309286 -70474186 - MSTC LTR MaLR 0 428 6 425 307 13 27 chr11 78309421 78309571 -70473901 + L1MEd LINE L1 520 667 -5452 641 253 25 19 chr11 78310173 78310335 -70473137 - MIR SINE MIR -72 190 28 375 298 50 14 chr11 78310368 78310509 -70472963 - MIR SINE MIR -52 210 65 385 234 72 0 chr11 78310550 78310661 -70472811 - MIR SINE MIR -94 168 50 14681 118 71 27 chr11 78310759 78311066 -70472406 - Tigger1 DNA MER2_type -1 2417 2125 252 0 0 0 chr11 78311066 78311094 -70472378 + (TTA)n Simple_repeat Simple_repeat 2 29 0 14681 118 71 27 chr11 78311094 78311146 -70472326 - Tigger1 DNA MER2_type -293 2125 2077 1715 167 4 4 chr11 78311146 78311427 -70472045 + AluJo SINE Alu 1 281 -31 14681 118 71 27 chr11 78311427 78312838 -70470634 - Tigger1 DNA MER2_type -341 2077 518 2215 80 0 64 chr11 78312838 78313152 -70470320 + AluSg SINE Alu 1 294 -16 14681 118 71 27 chr11 78313152 78313693 -70469779 - Tigger1 DNA MER2_type -1900 518 2 737 167 38 38 chr11 78314255 78314387 -70469085 - FLAM_A SINE Alu -1 132 1 213 39 0 0 chr11 78314401 78314427 -70469045 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 984 176 0 12 chr11 78314427 78314585 -70468887 - FAM SINE Alu -153 158 1 309 214 262 8 chr11 78314789 78314915 -70468557 + MIR SINE MIR 12 169 -93 995 309 53 67 chr11 78314978 78315483 -70467989 - L3 LINE CR1 -184 1393 896 2647 112 28 0 chr11 78315506 78315900 -70467572 - L1MB2 LINE L1 -5 6166 5762 1143 135 124 0 chr11 78315900 78316051 -70467421 - AluJo SINE Alu -18 294 115 423 0 0 0 chr11 78316051 78316098 -70467374 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 1143 135 124 0 chr11 78316098 78316131 -70467341 - AluJo SINE Alu -197 115 87 2029 199 15 8 chr11 78316131 78316528 -70466944 - L1MB2 LINE L1 -405 5766 5367 2241 118 6 10 chr11 78316548 78316861 -70466611 - AluSx SINE Alu 0 312 1 278 364 14 0 chr11 78316915 78317055 -70466417 - L3 LINE CR1 -759 818 677 373 307 65 33 chr11 78317170 78317323 -70466149 + L3 LINE CR1 1390 1547 -30 951 196 72 60 chr11 78317336 78317571 -70465901 - AluJo SINE Alu -14 298 61 26 0 0 0 chr11 78317628 78317654 -70465818 + AT_rich Low_complexity Low_complexity 1 26 0 1507 227 116 57 chr11 78317889 78318431 -70465041 - L1ME3A LINE L1 -38 6132 5559 1491 212 142 82 chr11 78318795 78318886 -70464586 - L1MC4a LINE L1 -1870 5938 5854 2141 116 7 0 chr11 78318886 78319179 -70464293 + AluSx SINE Alu 1 295 -17 1491 212 142 82 chr11 78319179 78319565 -70463907 - L1MC4a LINE L1 -1954 5854 5409 741 129 147 0 chr11 78319565 78319681 -70463791 - FLAM_C SINE Alu 0 133 1 1491 212 142 82 chr11 78319681 78319848 -70463624 - L1MC4a LINE L1 -2399 5409 5254 470 283 84 18 chr11 78319879 78320045 -70463427 - MIR SINE MIR -63 199 23 299 164 16 0 chr11 78320156 78320217 -70463255 + T-rich Low_complexity Low_complexity 5 66 0 365 319 215 11 chr11 78320217 78320496 -70462976 - L2 LINE L2 -1 3271 2936 585 241 14 14 chr11 78321931 78322072 -70461400 + MIR3 SINE MIR 13 153 -55 200 179 26 26 chr11 78322604 78322643 -70460829 - L2 LINE L2 -89 3183 3145 2339 97 0 3 chr11 78323833 78324132 -70459340 - AluSg SINE Alu -12 298 1 382 289 61 18 chr11 78325550 78325664 -70457808 + L2 LINE L2 3154 3272 0 297 199 3 28 chr11 78326748 78326811 -70456661 + Alu SINE Alu 1 50 -253 380 243 14 50 chr11 78328364 78328504 -70454968 + MIR3 SINE MIR 11 145 -63 230 314 0 14 chr11 78329060 78329130 -70454342 - MIR SINE MIR -123 139 71 273 271 71 0 chr11 78329752 78329837 -70453635 - MIR SINE MIR -76 186 96 1922 128 47 7 chr11 78329874 78330171 -70453301 + AluJb SINE Alu 1 309 -3 1889 189 25 22 chr11 78330336 78330695 -70452777 + MLT1A1 LTR MaLR 5 364 -1 653 199 0 144 chr11 78330710 78330911 -70452561 - MER5A DNA MER1_type -9 180 9 188 271 219 0 chr11 78331791 78331887 -70451585 + L2 LINE L2 3156 3272 0 385 278 160 7 chr11 78332678 78332822 -70450650 + MER91A DNA MER1_type 1 166 -30 334 225 78 49 chr11 78333358 78333500 -70449972 + MIR SINE MIR 67 212 -50 3293 78 23 5 chr11 78333551 78333987 -70449485 + MLT2A1 LTR ERVL 1 444 0 11726 80 10 62 chr11 78333987 78335653 -70447819 + THE1B-int LTR MaLR 1 1580 0 2297 124 48 20 chr11 78335653 78336007 -70447465 + THE1B LTR MaLR 1 364 0 2003 129 34 10 chr11 78386423 78386717 -70396755 - AluSx SINE Alu -11 301 1 1863 175 69 11 chr11 78386824 78386922 -70396550 + MER82 DNA MER2_type 23 114 -539 2218 116 0 10 chr11 78386922 78387224 -70396248 - AluSx SINE Alu -13 299 1 1863 175 69 11 chr11 78387224 78387474 -70395998 + MER82 DNA MER2_type 114 391 -262 401 36 0 18 chr11 78387640 78387696 -70395776 + (GGAA)n Simple_repeat Simple_repeat 3 57 0 1518 191 137 0 chr11 78388231 78388530 -70394942 - MER58B DNA MER1_type 0 341 2 312 271 68 41 chr11 78388660 78388800 -70394672 + L1MC/D LINE L1 4729 4879 -1267 1788 154 7 17 chr11 78388800 78389098 -70394374 + AluSx SINE Alu 1 295 -17 312 271 68 41 chr11 78389098 78389178 -70394294 + L1MC/D LINE L1 4879 4955 -1191 236 306 0 0 chr11 78389205 78389277 -70394195 + L1MC/D LINE L1 4957 5028 -1118 608 174 242 14 chr11 78389313 78389532 -70393940 - MLT1F LTR MaLR 0 542 274 242 207 17 17 chr11 78389682 78389740 -70393732 - MLT1F LTR MaLR -459 83 26 1279 261 42 22 chr11 78389763 78390352 -70393120 + L1MC/D LINE L1 5046 5653 -509 1002 166 0 12 chr11 78390400 78390563 -70392909 + FRAM SINE Alu 1 159 -17 262 261 171 11 chr11 78390565 78390653 -70392819 + MER5B DNA MER1_type 65 166 -12 292 297 14 16 chr11 78390653 78390782 -70392690 + L1MC/D LINE L1 5639 5769 -352 708 249 42 5 chr11 78390794 78391007 -70392465 - L1M4c LINE L1 -5195 1189 969 429 94 0 2 chr11 78391011 78391246 -70392226 - AluSc SINE Alu -7 302 28 477 162 50 0 chr11 78391350 78391449 -70392023 - L1MDa LINE L1 -4577 1963 1860 243 218 0 0 chr11 78391473 78391528 -70391944 + CT-rich Low_complexity Low_complexity 3 57 0 1583 178 61 14 chr11 78391536 78391829 -70391643 - AluJo SINE Alu -5 307 1 1291 244 78 53 chr11 78391830 78392380 -70391092 - L1MDa LINE L1 -5063 1480 917 238 240 0 0 chr11 78392694 78392744 -70390728 - L1MDa LINE L1 -5958 572 523 196 299 9 47 chr11 78393225 78393332 -70390140 + L2 LINE L2 2826 2928 -344 1721 170 22 0 chr11 78393491 78393795 -70389677 + AluJb SINE Alu 1 310 0 502 143 333 0 chr11 78393927 78394032 -70389440 + AluJo SINE Alu 3 142 -170 2505 61 0 0 chr11 78394149 78394460 -70389012 - AluY SINE Alu 0 311 1 326 229 271 0 chr11 78394476 78394572 -70388900 + MER5A DNA MER1_type 67 188 -1 361 291 35 40 chr11 78394593 78394792 -70388680 + L2 LINE L2 3116 3313 0 180 0 0 0 chr11 78396195 78396215 -70387257 + (CCG)n Simple_repeat Simple_repeat 2 21 0 206 78 0 118 chr11 78396215 78396266 -70387206 + (CCCCG)n Simple_repeat Simple_repeat 4 48 0 522 63 0 158 chr11 78396980 78397075 -70386397 - MADE1 DNA Mariner 0 80 1 215 327 0 0 chr11 78397795 78397850 -70385622 - L2 LINE L2 -17 3296 3242 299 319 21 0 chr11 78398094 78398188 -70385284 - MER5A DNA MER1_type -35 154 59 295 366 0 10 chr11 78398210 78398311 -70385161 + MER5A DNA MER1_type 10 109 -80 257 114 0 0 chr11 78398673 78398708 -70384764 - MER53 DNA DNA -152 37 3 2330 122 88 26 chr11 78398754 78399102 -70384370 - Tigger3(Golem) DNA MER2_type 0 3029 2653 182 37 37 0 chr11 78399102 78399129 -70384343 + (TGAG)n Simple_repeat Simple_repeat 1 28 0 2330 122 88 26 chr11 78399129 78399165 -70384307 - Tigger3(Golem) DNA MER2_type -376 2653 2621 2481 41 0 51 chr11 78399325 78399640 -70383832 + AluY SINE Alu 1 299 -12 747 175 52 109 chr11 78399786 78400015 -70383457 - L1MC3 LINE L1 -1843 5942 5727 236 285 208 14 chr11 78400052 78400196 -70383276 + HAL1 LINE L1 1 172 -2335 1559 120 37 0 chr11 78400289 78400530 -70382942 + L1MB2 LINE L1 5821 6070 -101 257 208 14 0 chr11 78400645 78400717 -70382755 + CT-rich Low_complexity Low_complexity 3 75 0 363 274 57 57 chr11 78400963 78401138 -70382334 - HAL1 LINE L1 -1362 1145 971 413 162 0 0 chr11 78401262 78401330 -70382142 - L1MB2 LINE L1 -184 5987 5920 342 285 58 65 chr11 78401537 78401797 -70381675 + HAL1 LINE L1 2249 2506 -1 2450 41 3 3 chr11 78402049 78402343 -70381129 - AluY SINE Alu -17 294 1 568 297 31 26 chr11 78402423 78402618 -70380854 + MIR SINE MIR 3 198 -64 28 0 0 0 chr11 78404641 78404669 -70378803 + AT_rich Low_complexity Low_complexity 1 28 0 1888 135 3 64 chr11 78404883 78405210 -70378262 - AluSx SINE Alu -5 307 1 1527 122 4 38 chr11 78405473 78405710 -70377762 + AluJo SINE Alu 1 229 -83 21 36 0 0 chr11 78407038 78407066 -70376406 + AT_rich Low_complexity Low_complexity 1 28 0 2387 87 3 0 chr11 78407220 78407518 -70375954 + AluSp SINE Alu 1 299 -14 184 329 71 0 chr11 78407661 78407731 -70375741 + L2 LINE L2 3163 3237 -35 338 253 38 0 chr11 78409068 78409147 -70374325 + L2 LINE L2 3231 3312 -1 378 0 0 0 chr11 78409517 78409559 -70373913 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 10221 69 16 6 chr11 78409631 78410953 -70372519 - SVA Other Other 0 1386 52 221 0 0 33 chr11 78410954 78410984 -70372488 + (GGGAGA)n Simple_repeat Simple_repeat 1 29 0 248 279 116 48 chr11 78411374 78411521 -70371951 - LTR67 LTR ERVL -288 269 113 318 317 191 10 chr11 78411900 78412099 -70371373 - L3 LINE CR1 -9 1568 1334 239 314 97 66 chr11 78412411 78412637 -70370835 + L2 LINE L2 3001 3233 -39 1512 176 77 35 chr11 78412899 78413212 -70370260 - MLT1F LTR MaLR -216 326 1 860 241 55 47 chr11 78413214 78413392 -70370080 - L2 LINE L2 -942 2372 2190 2518 60 0 3 chr11 78413392 78413691 -70369781 + AluY SINE Alu 1 298 -13 860 241 55 47 chr11 78413691 78413765 -70369707 - L2 LINE L2 -1124 2190 2118 234 274 104 7 chr11 78413798 78413933 -70369539 - L1MC5 LINE L1 -32 7929 7782 2124 241 63 19 chr11 78413993 78414516 -70368956 - MLT1H LTR MaLR -3 546 1 269 295 113 77 chr11 78414516 78414797 -70368675 - MLT1H-int LTR MaLR 0 1371 1075 1724 124 95 7 chr11 78414797 78415080 -70368392 + AluSx SINE Alu 2 309 -3 269 295 113 77 chr11 78415080 78415134 -70368338 - MLT1H-int LTR MaLR -296 1075 1024 1862 253 116 4 chr11 78415703 78416186 -70367286 - MLT1H LTR MaLR 0 549 13 298 311 148 16 chr11 78416458 78416702 -70366770 + L2 LINE L2 2585 2860 -454 274 234 146 76 chr11 78416794 78416952 -70366520 + L2 LINE L2 3104 3272 0 297 314 69 0 chr11 78417412 78417529 -70365943 - MIR SINE MIR -91 117 40 235 250 0 0 chr11 78417620 78417672 -70365800 - MIR3 SINE MIR -3 205 154 461 216 34 132 chr11 78417677 78417881 -70365591 - MER5A DNA MER1_type -5 184 1 261 276 198 8 chr11 78418015 78418199 -70365273 + MIR SINE MIR 20 248 -14 1939 127 3 13 chr11 78418273 78418573 -70364899 + AluSx SINE Alu 1 297 -15 1790 156 0 48 chr11 78418751 78419066 -70364406 + AluJo SINE Alu 1 300 -12 415 250 95 9 chr11 78419710 78419826 -70363646 + MER96 DNA MER1_type? 7 132 -43 248 140 20 0 chr11 78419826 78419876 -70363596 - L1MB8 LINE L1 -4 6174 6124 32 0 0 0 chr11 78419876 78419908 -70363564 + AT_rich Low_complexity Low_complexity 1 32 0 371 83 0 0 chr11 78419908 78419956 -70363516 - MER66B LTR ERV1 -140 346 299 2239 186 48 15 chr11 78419962 78420424 -70363048 - L1MB8 LINE L1 -40 6138 5662 990 118 0 0 chr11 78420425 78420561 -70362911 + AluSq/x SINE Alu 1 136 -176 1916 119 52 14 chr11 78420562 78420848 -70362624 + AluSx SINE Alu 3 299 -13 2166 165 47 13 chr11 78420848 78421298 -70362174 - L1MB8 LINE L1 -518 5666 5208 * 4394 214 45 6 chr11 78421287 78422357 -70361115 - L1MB8 LINE L1 -1927 4219 3108 445 224 0 0 chr11 78422423 78422499 -70360973 - MER58A DNA MER1_type -30 77 2 398 178 108 157 chr11 78422509 78422694 -70360778 - MER5B DNA MER1_type -1 177 2 839 212 81 10 chr11 78422732 78422930 -70360542 - MLT1C LTR MaLR -50 417 206 531 201 90 35 chr11 78422940 78423084 -70360388 - MER21B LTR ERV1 -410 453 302 405 0 0 0 chr11 78423313 78423358 -70360114 + (TG)n Simple_repeat Simple_repeat 1 45 0 268 324 63 53 chr11 78423561 78423860 -70359612 - L1MEd LINE L1 -5727 392 91 302 299 61 43 chr11 78423954 78424185 -70359287 - L1ME LINE L1 -298 5823 5589 330 328 66 74 chr11 78424400 78424644 -70358828 - L2 LINE L2 -14 3258 3017 1378 210 39 24 chr11 78424644 78425025 -70358447 - L1ME LINE L1 -1401 4745 4359 1899 242 73 20 chr11 78425351 78425639 -70357833 + L1M4 LINE L1 4700 4971 -1175 1644 113 28 60 chr11 78425639 78425921 -70357551 + AluJo SINE Alu 3 275 -37 180 0 114 0 chr11 78425928 78425963 -70357509 + A-rich Low_complexity Low_complexity 1 39 0 1899 242 73 20 chr11 78425963 78426256 -70357216 + L1M4 LINE L1 4976 5320 -826 385 89 0 20 chr11 78426324 78426392 -70357080 + L1MB3 LINE L1 6083 6146 -28 343 276 161 71 chr11 78426406 78426728 -70356744 - MLT1K LTR MaLR -61 527 177 339 275 37 9 chr11 78426943 78427052 -70356420 - L2 LINE L2 0 3313 3202 2239 85 3 10 chr11 78427297 78427604 -70355868 - AluSg1 SINE Alu -4 305 1 208 213 16 16 chr11 78428114 78428175 -70355297 + (TA)n Simple_repeat Simple_repeat 2 62 0 750 233 78 127 chr11 78428247 78428784 -70354688 - MLT1J LTR MaLR 0 511 1 281 345 26 0 chr11 78428948 78429061 -70354411 - LTR16B LTR ERVL -348 116 1 248 316 102 76 chr11 78429061 78429204 -70354268 + L2 LINE L2 2017 2155 -1159 2352 82 3 3 chr11 78429204 78429509 -70353963 - AluSx SINE Alu -7 305 1 248 316 102 76 chr11 78429509 78429669 -70353803 + L2 LINE L2 2155 2328 -986 39 22 0 0 chr11 78429684 78429730 -70353742 + AT_rich Low_complexity Low_complexity 1 46 0 911 137 0 0 chr11 78429753 78429884 -70353588 - FLAM_C SINE Alu -12 131 1 24 0 0 0 chr11 78430082 78430106 -70353366 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr11 78430264 78430287 -70353185 + AT_rich Low_complexity Low_complexity 1 23 0 824 223 33 12 chr11 78430291 78430705 -70352767 + L1MC5 LINE L1 7459 7924 -37 29 0 0 0 chr11 78430808 78430837 -70352635 + AT_rich Low_complexity Low_complexity 1 29 0 2159 136 0 0 chr11 78430838 78431132 -70352340 - AluSx SINE Alu -18 294 1 418 228 31 74 chr11 78431237 78431399 -70352073 - MLT1L LTR MaLR -7 608 454 186 43 0 0 chr11 78431845 78431868 -70351604 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2088 96 0 21 chr11 78431897 78432179 -70351293 - AluSx SINE Alu -36 276 1 1925 166 3 0 chr11 78432432 78432739 -70350733 + AluJo SINE Alu 1 308 -4 27 81 0 0 chr11 78433892 78433954 -70349518 + AT_rich Low_complexity Low_complexity 1 62 0 852 194 7 0 chr11 78434996 78435140 -70348332 - FRAM SINE Alu -31 145 1 444 217 51 58 chr11 78435350 78435488 -70347984 + L2 LINE L2 3176 3312 -1 627 292 57 39 chr11 78435612 78435958 -70347514 - L1MC/D LINE L1 -743 5403 5074 2238 107 0 3 chr11 78435958 78436266 -70347206 + AluSg1 SINE Alu 2 308 -1 627 292 57 39 chr11 78436266 78436349 -70347123 - L1MC/D LINE L1 -1072 5074 4994 1842 222 67 7 chr11 78436520 78436964 -70346508 - L1MD2 LINE L1 -215 6144 5673 1109 287 89 10 chr11 78437325 78437844 -70345628 - L1ME LINE L1 -345 5817 5258 894 284 50 11 chr11 78437922 78438200 -70345272 - L1MC/D LINE L1 -2030 5778 5490 2653 177 15 42 chr11 78438561 78439080 -70344392 + MLT1D LTR MaLR 1 505 0 302 301 43 21 chr11 78439082 78439175 -70344297 - L1ME4a LINE L1 -46 6075 5981 2058 113 3 7 chr11 78439180 78439481 -70343991 - AluSg SINE Alu -10 300 1 243 319 30 6 chr11 78439482 78439648 -70343824 - L1ME4a LINE L1 -222 5948 5779 397 306 52 10 chr11 78439807 78440000 -70343472 + L1M4 LINE L1 1 201 -6341 1355 143 42 0 chr11 78440130 78440190 -70343282 + AluSx SINE Alu 63 119 -193 387 0 0 0 chr11 78440190 78440233 -70343239 + (TA)n Simple_repeat Simple_repeat 2 44 0 1355 143 42 0 chr11 78440233 78440410 -70343062 + AluSx SINE Alu 119 310 -2 653 252 7 7 chr11 78440518 78440665 -70342807 + MER69 DNA AcHobo 2 148 -2378 362 130 145 14 chr11 78440659 78440728 -70342744 + MER69 DNA AcHobo 2449 2526 0 * 2628 110 6 3 chr11 78441753 78442116 -70341356 + THE1B LTR MaLR 1 364 0 408 285 26 60 chr11 78442116 78442267 -70341205 + L2 LINE L2 3155 3300 -13 469 301 33 20 chr11 78442329 78442482 -70340990 - MIR3 SINE MIR -9 199 45 2093 103 3 7 chr11 78442603 78442904 -70340568 + AluSx SINE Alu 1 300 -12 185 152 30 0 chr11 78443233 78443266 -70340206 + MIR SINE MIR 219 252 -10 2333 46 0 3 chr11 78443312 78443596 -70339876 - AluY SINE Alu -9 302 20 467 323 60 40 chr11 78444628 78445030 -70338442 - L2 LINE L2 -358 2956 2547 787 161 31 12 chr11 78445206 78445346 -70338126 + L1MB2 LINE L1 6006 6151 -20 243 0 0 0 chr11 78445346 78445373 -70338099 + (TG)n Simple_repeat Simple_repeat 2 28 0 787 161 31 12 chr11 78445373 78445394 -70338078 + L1MB2 LINE L1 6151 6170 -1 1803 126 29 4 chr11 78445396 78445697 -70337775 + AluSx SINE Alu 1 308 0 285 296 0 12 chr11 78446748 78446829 -70336643 - MIR3 SINE MIR -22 186 107 * 441 188 128 38 chr11 78446807 78446940 -70336532 + MIR3 SINE MIR 30 174 -34 682 242 5 84 chr11 78447686 78447876 -70335596 - MIR3 SINE MIR -18 190 16 550 266 30 69 chr11 78448567 78448770 -70334702 - MIR3 SINE MIR -13 195 1 505 298 111 69 chr11 78448830 78449150 -70334322 + L2 LINE L2 2832 3176 -96 432 55 0 0 chr11 78449150 78449205 -70334267 + (TG)n Simple_repeat Simple_repeat 2 56 0 505 298 111 69 chr11 78449205 78449307 -70334165 + L2 LINE L2 3176 3272 0 276 287 147 40 chr11 78449713 78449863 -70333609 + MIR SINE MIR 51 216 -46 392 239 12 123 chr11 78450137 78450355 -70333117 + MIR3 SINE MIR 9 203 -59 389 261 80 43 chr11 78450534 78450672 -70332800 + MIR3 SINE MIR 9 151 -57 230 193 140 132 chr11 78450802 78450916 -70332556 - MIR SINE MIR -63 145 31 444 37 0 0 chr11 78452720 78452774 -70330698 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 1539 158 41 0 chr11 78452775 78453041 -70330431 - AluJb SINE Alu -31 281 5 582 286 6 30 chr11 78453051 78453219 -70330253 - MER5A DNA MER1_type -8 181 18 1804 137 8 0 chr11 78453524 78453787 -70329685 - AluSx SINE Alu -47 265 1 620 267 131 9 chr11 78453787 78454008 -70329464 - L3 LINE CR1 -80 1497 1250 1840 164 0 13 chr11 78454010 78454309 -70329163 + AluJb SINE Alu 1 295 -17 2005 114 24 20 chr11 78454312 78454610 -70328862 + AluSg SINE Alu 2 300 -10 208 385 0 0 chr11 78454745 78454828 -70328644 + MIR SINE MIR 180 262 0 351 274 38 45 chr11 78455039 78455196 -70328276 + L2 LINE L2 3010 3165 -148 576 263 112 12 chr11 78455225 78455484 -70327988 + LTR33 LTR ERVL 237 521 0 269 312 220 7 chr11 78455537 78455678 -70327794 + L2 LINE L2 3102 3272 0 186 276 35 0 chr11 78455724 78455782 -70327690 - L2 LINE L2 -219 3053 2994 304 279 266 19 chr11 78455791 78455945 -70327527 + L2 LINE L2 2244 2435 -879 282 292 153 14 chr11 78455928 78456072 -70327400 + L2 LINE L2 3086 3249 -64 * 285 282 29 10 chr11 78456544 78456647 -70326825 + MIR3 SINE MIR 89 193 -15 305 273 194 6 chr11 78456763 78456928 -70326544 + MIR SINE MIR 31 226 -36 2137 114 3 3 chr11 78456964 78457272 -70326200 + AluSx SINE Alu 1 308 -4 484 234 54 6 chr11 78457399 78457730 -70325742 - LTR33 LTR ERVL -9 512 90 410 224 179 8 chr11 78457963 78458097 -70325375 + L2 LINE L2 2896 3052 -220 228 277 29 32 chr11 78458528 78458660 -70324812 + MIR SINE MIR 84 216 -46 1152 249 172 8 chr11 78458853 78459226 -70324246 - LTR16C LTR ERVL -9 482 49 1908 148 0 25 chr11 78459235 78459553 -70323919 - AluJb SINE Alu -2 310 1 454 240 48 55 chr11 78459774 78459920 -70323552 + MLT1K LTR MaLR 2 146 -442 1018 230 69 25 chr11 78459995 78460269 -70323203 + MLT1K LTR MaLR 303 588 0 270 330 94 0 chr11 78460385 78460491 -70322981 + L2 LINE L2 3123 3238 -34 * 359 282 154 0 chr11 78460486 78460642 -70322830 + L3 LINE CR1 1050 1229 -348 376 304 97 29 chr11 78460650 78460857 -70322615 - L2 LINE L2 0 3272 3052 599 200 121 24 chr11 78460869 78461034 -70322438 + L3 LINE CR1 1311 1491 -86 242 241 91 86 chr11 78461045 78461465 -70322007 - L1MEc LINE L1 -3997 2399 1978 1814 142 0 0 chr11 78461465 78461739 -70321733 + AluSg SINE Alu 1 274 -36 1888 91 8 8 chr11 78461916 78462181 -70321291 + AluSx SINE Alu 46 310 -2 21 0 0 0 chr11 78462196 78462217 -70321255 + AT_rich Low_complexity Low_complexity 1 21 0 374 279 66 15 chr11 78462264 78462400 -70321072 + MIR3 SINE MIR 58 200 -8 304 247 12 25 chr11 78462407 78462488 -70320984 - MER116 DNA Mariner 0 80 1 225 276 0 0 chr11 78463535 78463593 -70319879 - MLT1K LTR MaLR -17 571 514 1978 107 3 10 chr11 78463798 78464087 -70319385 + AluSq SINE Alu 1 287 -26 234 125 0 0 chr11 78464088 78464136 -70319336 + (TA)n Simple_repeat Simple_repeat 2 49 0 214 193 70 0 chr11 78464136 78464193 -70319279 + (TCTCTG)n Simple_repeat Simple_repeat 5 65 0 397 211 9 46 chr11 78464364 78464473 -70318999 - L2 LINE L2 -2 3311 3207 * 403 222 9 83 chr11 78464467 78464575 -70318897 - MIR SINE MIR -7 255 156 860 230 90 63 chr11 78464752 78464793 -70318679 - LTR16A1 LTR ERVL -1 456 418 1876 144 7 0 chr11 78464793 78465085 -70318387 - AluJo SINE Alu -18 294 1 860 230 90 63 chr11 78465085 78465408 -70318064 - LTR16A1 LTR ERVL -39 418 82 461 264 92 50 chr11 78465404 78465665 -70317807 - LTR16A1 LTR ERVL -106 351 80 * 2021 110 0 27 chr11 78465909 78466210 -70317262 + AluSx SINE Alu 4 296 -16 2391 93 0 0 chr11 78466321 78466634 -70316838 + AluSq SINE Alu 1 313 0 1358 149 7 60 chr11 78466650 78466919 -70316553 + AluJb SINE Alu 1 255 -57 36 0 0 0 chr11 78466923 78466959 -70316513 + AT_rich Low_complexity Low_complexity 1 36 0 480 283 56 40 chr11 78467002 78467356 -70316116 - MLT1J1 LTR MaLR -121 325 1 180 0 0 0 chr11 78467562 78467582 -70315890 + (T)n Simple_repeat Simple_repeat 1 20 0 998 300 64 7 chr11 78467892 78468189 -70315283 + LTR16A LTR ERVL 130 443 -7 21 0 0 0 chr11 78469536 78469557 -70313915 + AT_rich Low_complexity Low_complexity 1 21 0 435 246 292 23 chr11 78469652 78469857 -70313615 - MIR SINE MIR 0 262 7 189 176 0 0 chr11 78469987 78470014 -70313458 - MIR3 SINE MIR 0 208 182 415 303 43 0 chr11 78470014 78470147 -70313325 + MIR SINE MIR 1 138 -70 615 193 9 9 chr11 78470223 78470337 -70313135 - MER45A DNA AcHobo -19 159 46 344 262 37 98 chr11 78470404 78470481 -70312991 - MIR3 SINE MIR -43 165 102 1915 133 0 0 chr11 78470481 78470760 -70312712 + AluSg SINE Alu 1 279 -31 344 262 37 98 chr11 78470760 78470846 -70312626 - MIR3 SINE MIR -106 102 12 342 273 108 0 chr11 78470900 78471039 -70312433 + MER103 DNA DNA 3 156 -10 205 304 25 51 chr11 78471463 78471542 -70311930 + MIR SINE MIR 36 112 -96 1163 291 44 17 chr11 78472350 78472756 -70310716 - LTR16B LTR ERVL -14 450 34 210 291 110 31 chr11 78473523 78473650 -70309822 + MIR3 SINE MIR 64 200 -8 21 0 0 0 chr11 78473695 78473716 -70309756 + GC_rich Low_complexity Low_complexity 1 21 0 249 304 0 0 chr11 78474698 78474753 -70308719 + L2 LINE L2 2989 3043 -229 561 276 77 28 chr11 78474753 78474934 -70308538 + MER91B DNA MER1_type 1 190 0 370 297 50 84 chr11 78474938 78475177 -70308295 + L2 LINE L2 3040 3270 -2 395 293 88 33 chr11 78475253 78475434 -70308038 + MIR SINE MIR 47 237 -25 182 31 0 62 chr11 78475710 78475742 -70307730 + (CACCC)n Simple_repeat Simple_repeat 3 32 0 299 364 46 46 chr11 78476454 78476605 -70306867 - MIR3 SINE MIR -52 156 6 187 339 32 16 chr11 78476895 78476957 -70306515 + L2 LINE L2 2981 3043 -229 2096 110 156 8 chr11 78477015 78477387 -70306085 - MSTA LTR MaLR -1 427 1 230 386 179 7 chr11 78477476 78477616 -70305856 + L2 LINE L2 3107 3270 -2 743 247 132 0 chr11 78477968 78478158 -70305314 - MIR SINE MIR -43 219 5 939 109 0 7 chr11 78478173 78478310 -70305162 + AluJb SINE Alu 1 136 -176 1884 160 3 0 chr11 78478310 78478617 -70304855 + AluJb SINE Alu 1 308 -4 368 296 167 26 chr11 78478863 78479127 -70304345 - MLT1H LTR MaLR -4 545 245 369 288 30 8 chr11 78479175 78479307 -70304165 + MIR SINE MIR 71 205 -57 26 64 0 0 chr11 78479591 78479638 -70303834 + AT_rich Low_complexity Low_complexity 1 47 0 1799 144 3 49 chr11 78481014 78481341 -70302131 - AluJb SINE Alu 0 312 1 298 114 0 0 chr11 78481517 78481561 -70301911 + L1MB1 LINE L1 6077 6120 -48 638 283 106 18 chr11 78481720 78481946 -70301526 + MIR SINE MIR 5 250 -12 1122 229 115 24 chr11 78483027 78483041 -70300431 - L1ME3A LINE L1 -302 5868 5857 2113 125 46 27 chr11 78483041 78483409 -70300063 - THE1C LTR MaLR 0 375 1 1122 229 115 24 chr11 78483409 78483760 -70299712 - L1ME3A LINE L1 -313 5857 5474 889 157 0 0 chr11 78483775 78483922 -70299550 + AluSg/x SINE Alu 163 309 -3 371 256 64 61 chr11 78483922 78484109 -70299363 - L1ME3A LINE L1 -718 5444 5259 1814 166 0 17 chr11 78484109 78484411 -70299061 - AluJb SINE Alu -12 300 4 371 256 64 61 chr11 78484411 78484656 -70298816 - L1ME3A LINE L1 -903 5259 5016 1881 155 38 0 chr11 78484656 78484947 -70298525 - AluJb SINE Alu -10 302 1 371 256 64 61 chr11 78484947 78485346 -70298126 - L1ME3A LINE L1 -1146 5016 4633 2237 103 3 6 chr11 78485346 78485658 -70297814 - AluSx SINE Alu -1 311 1 371 256 64 61 chr11 78485658 78485915 -70297557 - L1ME3A LINE L1 -1529 4633 4378 2397 96 0 0 chr11 78485922 78486234 -70297238 + AluSx SINE Alu 1 312 0 237 65 0 0 chr11 78486253 78486284 -70297188 + (A)n Simple_repeat Simple_repeat 1 31 0 30 0 0 0 chr11 78486691 78486721 -70296751 + AT_rich Low_complexity Low_complexity 1 30 0 48 0 0 0 chr11 78486842 78486890 -70296582 + AT_rich Low_complexity Low_complexity 1 48 0 408 335 54 0 chr11 78487019 78487243 -70296229 + L1M4 LINE L1 4105 4340 -1806 189 0 0 0 chr11 78487648 78487669 -70295803 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 876 151 65 0 chr11 78487672 78487811 -70295661 - FRAM SINE Alu -30 146 1 21 0 0 0 chr11 78488578 78488599 -70294873 + AT_rich Low_complexity Low_complexity 1 21 0 1538 173 0 4 chr11 78488599 78488877 -70294595 - L1MB1 LINE L1 -1 6167 5891 30 27 0 0 chr11 78489132 78489169 -70294303 + AT_rich Low_complexity Low_complexity 1 37 0 251 246 16 0 chr11 78489214 78489275 -70294197 - L2 LINE L2 -216 3056 2995 289 262 97 62 chr11 78489455 78489600 -70293872 - MIR SINE MIR -6 256 107 1977 149 0 3 chr11 78490151 78490447 -70293025 + AluJo SINE Alu 1 295 -17 749 283 52 17 chr11 78490455 78490745 -70292727 - L1MB1 LINE L1 -2213 5595 5296 343 277 85 62 chr11 78490849 78491026 -70292446 - L1ME4a LINE L1 -293 5828 5648 207 417 31 0 chr11 78491280 78491376 -70292096 - L3 LINE CR1 -1 1576 1478 33 56 0 0 chr11 78492319 78492373 -70291099 + AT_rich Low_complexity Low_complexity 1 54 0 430 282 66 50 chr11 78492569 78492944 -70290528 + L1M4 LINE L1 1256 1746 -4888 3406 75 59 0 chr11 78492955 78493084 -70290388 + L1PA10 LINE L1 5651 5771 -397 213 65 0 0 chr11 78493084 78493115 -70290357 + (TA)n Simple_repeat Simple_repeat 2 32 0 3406 75 59 0 chr11 78493115 78493463 -70290009 + L1PA10 LINE L1 5771 6156 -12 595 274 63 5 chr11 78493742 78493965 -70289507 - L1ME LINE L1 -346 5775 5540 1168 240 110 67 chr11 78493967 78494132 -70289340 + MLT1G1 LTR MaLR 1 157 -398 1916 178 0 0 chr11 78494132 78494436 -70289036 + AluJb SINE Alu 4 307 -5 1168 240 110 67 chr11 78494436 78494786 -70288686 + MLT1G1 LTR MaLR 157 542 -13 199 279 0 16 chr11 78495058 78495119 -70288353 + L2 LINE L2 2329 2388 -926 974 163 6 17 chr11 78495184 78495356 -70288116 + AluJb SINE Alu 138 307 -5 791 238 183 27 chr11 78495385 78495713 -70287759 - MLT1J2 LTR MaLR -31 419 41 263 173 227 13 chr11 78495731 78495806 -70287666 - MIR SINE MIR -67 141 51 283 350 17 34 chr11 78495899 78496016 -70287456 - MIR3 SINE MIR -79 129 15 21 100 0 0 chr11 78496230 78496300 -70287172 + AT_rich Low_complexity Low_complexity 1 70 0 2101 123 0 7 chr11 78496993 78497286 -70286186 - AluSq SINE Alu -22 291 1 2118 179 49 2 chr11 78497487 78497894 -70285578 + MSTB LTR MaLR 1 426 0 22 35 0 0 chr11 78497941 78497970 -70285502 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr11 78498553 78498582 -70284890 + AT_rich Low_complexity Low_complexity 1 29 0 2378 103 0 6 chr11 78498596 78498908 -70284564 - AluSx SINE Alu -2 310 1 2514 40 7 0 chr11 78499496 78499793 -70283679 + AluY SINE Alu 1 299 -12 241 178 0 0 chr11 78500292 78500337 -70283135 + L1MC4 LINE L1 6659 6703 -1339 422 146 15 39 chr11 78500342 78500472 -70283000 + (TA)n Simple_repeat Simple_repeat 1 127 0 243 309 81 32 chr11 78500597 78500720 -70282752 + MIR SINE MIR 29 157 -105 310 274 131 34 chr11 78500735 78500910 -70282562 - L1ME LINE L1 -411 5710 5519 673 165 29 0 chr11 78501899 78502002 -70281470 + FRAM SINE Alu 1 102 -74 2361 77 0 0 chr11 78502548 78502834 -70280638 + AluSc SINE Alu 3 288 -21 180 0 0 0 chr11 78502855 78502875 -70280597 + (T)n Simple_repeat Simple_repeat 1 20 0 549 100 0 0 chr11 78503859 78503939 -70279533 + MADE1 DNA Mariner 1 80 0 236 247 141 24 chr11 78504109 78504194 -70279278 + L2 LINE L2 3200 3294 -19 29 78 0 0 chr11 78504386 78504450 -70279022 + AT_rich Low_complexity Low_complexity 1 64 0 23 33 0 0 chr11 78505751 78505781 -70277691 + AT_rich Low_complexity Low_complexity 1 30 0 661 262 86 39 chr11 78506423 78506591 -70276881 + L1M4 LINE L1 2746 2905 -3241 5249 171 17 30 chr11 78506591 78506881 -70276591 - Tigger6a DNA MER2_type -514 1083 791 2032 149 0 0 chr11 78506881 78507177 -70276295 + AluSx SINE Alu 1 296 -16 5249 171 17 30 chr11 78507177 78507983 -70275489 - Tigger6a DNA MER2_type -806 791 1 661 262 86 39 chr11 78507983 78508246 -70275226 + L1M4 LINE L1 2905 3197 -2949 374 154 39 0 chr11 78508854 78508932 -70274540 - LTR33 LTR ERVL -440 81 1 678 269 108 53 chr11 78509065 78509407 -70274065 - L2 LINE L2 -861 2453 2093 1281 281 104 47 chr11 78509610 78510446 -70273026 + L2 LINE L2 2250 3139 -174 582 154 60 51 chr11 78510449 78510554 -70272918 - FRAM SINE Alu -146 166 58 23156 38 12 1 chr11 78510554 78514191 -70269281 - L1PA5 LINE L1 0 6154 2487 582 154 60 51 chr11 78514191 78514202 -70269270 - FRAM SINE Alu -254 58 49 17093 82 7 0 chr11 78514202 78516487 -70266985 - L1PA5 LINE L1 -3826 2320 21 404 208 22 4 chr11 78516487 78516594 -70266878 - FLAM_A SINE Alu -57 75 11 318 98 0 0 chr11 78516603 78516654 -70266818 + (TCCC)n Simple_repeat Simple_repeat 4 54 0 1294 166 46 0 chr11 78516669 78516886 -70266586 - AluJo SINE Alu 0 312 86 290 232 123 58 chr11 78516905 78517043 -70266429 + L2 LINE L2 3155 3301 -12 307 276 43 17 chr11 78517173 78517289 -70266183 - L1MC4a LINE L1 -1836 5955 5837 411 219 0 0 chr11 78517331 78517427 -70266045 + (TA)n Simple_repeat Simple_repeat 1 96 0 192 179 0 0 chr11 78517473 78517512 -70265960 + (TATG)n Simple_repeat Simple_repeat 2 40 0 607 124 0 0 chr11 78517566 78517655 -70265817 + AluJ/FRAM SINE Alu 216 304 -8 337 300 0 9 chr11 78517658 78517768 -70265704 + L1ME LINE L1 5685 5793 -328 225 257 0 29 chr11 78517792 78517862 -70265610 + (TATG)n Simple_repeat Simple_repeat 4 71 0 357 152 76 95 chr11 78517872 78517977 -70265495 + Charlie5 DNA MER1_type 2522 2624 0 2263 121 0 0 chr11 78518014 78518321 -70265151 - AluSx SINE Alu -4 308 2 635 278 148 4 chr11 78518322 78518585 -70264887 - L1MC4a LINE L1 -2171 5620 5320 6279 135 76 11 chr11 78518593 78519780 -70263692 - L1MC1 LINE L1 0 6333 5083 2220 91 0 48 chr11 78519780 78520089 -70263383 + AluSq SINE Alu 1 294 -19 6279 135 76 11 chr11 78520089 78520155 -70263317 - L1MC1 LINE L1 -1250 5083 5023 300 264 200 0 chr11 78520158 78520298 -70263174 - L1MC4a LINE L1 -803 5326 5159 293 293 15 15 chr11 78520345 78520478 -70262994 - L1MC4a LINE L1 -1537 4592 4460 2455 49 10 13 chr11 78521349 78521657 -70261815 - AluY SINE Alu -4 307 1 314 369 0 0 chr11 78521709 78521877 -70261595 + (CCA)n Simple_repeat Simple_repeat 1 168 0 457 257 113 46 chr11 78522642 78522934 -70260538 - MLT1J LTR MaLR 0 511 229 4926 68 6 8 chr11 78523040 78523670 -70259802 + SVA Other Other 753 1381 -5 583 289 44 17 chr11 78523956 78524357 -70259115 - L1MC4a LINE L1 -5659 460 19 230 271 47 47 chr11 78524416 78524501 -70258971 + L3 LINE CR1 1486 1570 -7 2470 78 0 0 chr11 78525017 78525325 -70258147 - AluY SINE Alu -3 308 1 1836 161 9 12 chr11 78525724 78526059 -70257413 + L1MB8 LINE L1 5699 6032 -146 354 45 0 0 chr11 78526063 78526107 -70257365 + (TC)n Simple_repeat Simple_repeat 1 44 0 2212 125 0 0 chr11 78526107 78526411 -70257061 - AluSq SINE Alu -9 304 1 915 145 0 7 chr11 78526413 78526565 -70256907 + L1MB8 LINE L1 6028 6178 0 225 197 189 79 chr11 78526959 78527086 -70256386 + L1MC4a LINE L1 6217 6357 -1451 200 222 0 0 chr11 78527141 78527186 -70256286 + (TA)n Simple_repeat Simple_repeat 2 46 0 37 52 0 0 chr11 78527261 78527319 -70256153 + AT_rich Low_complexity Low_complexity 1 58 0 1270 201 21 122 chr11 78527358 78527974 -70255498 + L1MC5 LINE L1 6675 7228 -733 928 229 86 33 chr11 78528095 78528514 -70254958 + L1MC5 LINE L1 7258 7698 -263 28 48 0 0 chr11 78528659 78528701 -70254771 + AT_rich Low_complexity Low_complexity 1 42 0 594 306 224 21 chr11 78528788 78529323 -70254149 - L2 LINE L2 -1684 1630 987 197 284 15 30 chr11 78529328 78529395 -70254077 - L2 LINE L2 -665 2649 2584 32 26 0 0 chr11 78529859 78529898 -70253574 + AT_rich Low_complexity Low_complexity 1 39 0 233 255 69 29 chr11 78530348 78530450 -70253022 - L1ME4a LINE L1 -48 6073 5968 2170 102 3 16 chr11 78530709 78531013 -70252459 - AluSp SINE Alu -3 310 11 195 347 41 58 chr11 78532775 78532896 -70250576 + MIR SINE MIR 5 123 -139 2135 131 7 0 chr11 78532931 78533236 -70250236 + AluSg SINE Alu 1 307 -3 2516 75 7 0 chr11 78533513 78533818 -70249654 + AluSg SINE Alu 1 307 -3 365 228 207 7 chr11 78535225 78535370 -70248102 - MER21B LTR ERV1 -361 502 329 2076 189 22 40 chr11 78535493 78535866 -70247606 + MER41B LTR ERV1 163 528 -107 2272 122 0 0 chr11 78535866 78536177 -70247295 - AluSx SINE Alu 0 312 2 2076 189 22 40 chr11 78536177 78536248 -70247224 + MER41B LTR ERV1 528 599 -36 209 244 23 81 chr11 78537313 78537399 -70246073 - MIR SINE MIR -41 221 141 644 299 104 32 chr11 78537481 78537856 -70245616 - L2 LINE L2 -18 3254 2853 306 354 61 6 chr11 78537877 78538058 -70245414 - L2 LINE L2 -653 2661 2471 476 263 263 9 chr11 78538142 78538359 -70245113 - Charlie7 DNA MER1_type -2335 277 6 264 271 209 8 chr11 78538403 78538532 -70244940 + MIR SINE MIR 28 182 -80 1433 130 41 8 chr11 78538659 78538905 -70244567 - L1MB2 LINE L1 -2 6169 5916 3178 154 21 30 chr11 78539154 78539778 -70243694 - L1MB8 LINE L1 -9 6169 5552 707 250 67 67 chr11 78540025 78540353 -70243119 - MARNA DNA Mariner -127 459 132 2283 92 0 3 chr11 78542168 78542462 -70241010 + AluSg SINE Alu 1 293 -17 871 194 19 0 chr11 78542521 78542681 -70240791 + FRAM SINE Alu 1 163 -13 23 33 0 0 chr11 78542833 78542863 -70240609 + AT_rich Low_complexity Low_complexity 1 30 0 399 248 60 127 chr11 78544056 78544355 -70239117 + L3b LINE CR1 1108 1386 -197 21 0 0 0 chr11 78544405 78544426 -70239046 + AT_rich Low_complexity Low_complexity 1 21 0 1964 138 0 3 chr11 78644630 78644934 -70138538 - AluJo SINE Alu -6 306 4 272 239 125 11 chr11 78644940 78645028 -70138444 - MIR SINE MIR -55 153 56 232 297 75 4 chr11 78645332 78645451 -70138021 - MIR SINE MIR -50 212 78 5326 130 32 27 chr11 78645552 78646413 -70137059 + MER49 LTR ERV1 1 868 -55 1455 170 53 3 chr11 78646413 78646695 -70136777 + AluJo SINE Alu 16 311 -1 5326 130 32 27 chr11 78646695 78646748 -70136724 + MER49 LTR ERV1 868 919 -4 210 191 48 0 chr11 78646756 78646798 -70136674 - MIR SINE MIR -113 149 106 294 270 22 11 chr11 78647340 78647429 -70136043 + MIR3 SINE MIR 104 193 -15 277 276 19 38 chr11 78647451 78647556 -70135916 + MIR SINE MIR 44 146 -116 372 285 21 41 chr11 78647857 78648003 -70135469 - MIR SINE MIR -62 146 45 2041 123 0 0 chr11 78648714 78649041 -70134431 + AluSx SINE Alu 1 312 0 275 191 0 0 chr11 78649412 78649459 -70134013 - L2 LINE L2 0 3313 3267 324 276 112 30 chr11 78649731 78649865 -70133607 + MIR SINE MIR 67 211 -51 365 315 54 27 chr11 78649980 78650154 -70133318 - MIR3 SINE MIR -60 148 11 285 234 0 0 chr11 78651162 78651226 -70132246 + L2 LINE L2 3209 3272 0 200 191 24 48 chr11 78651547 78651631 -70131841 + (CAGAGA)n Simple_repeat Simple_repeat 1 82 0 238 326 68 23 chr11 78652759 78652891 -70130581 + L2 LINE L2 2945 3082 -190 294 286 45 28 chr11 78653061 78653219 -70130253 - MIR SINE MIR -26 182 17 276 370 32 16 chr11 78653266 78653512 -70129960 - L2 LINE L2 -344 2970 2721 2237 100 0 0 chr11 78653582 78653881 -70129591 - AluSg SINE Alu -11 299 1 1466 96 0 41 chr11 78653937 78654181 -70129291 + AluSq SINE Alu 72 306 0 318 336 0 26 chr11 78654181 78654294 -70129178 - MIR SINE MIR -130 132 23 2061 118 0 0 chr11 78655119 78655408 -70128064 - AluSq SINE Alu -17 296 8 297 331 90 24 chr11 78655418 78655584 -70127888 - L2 LINE L2 -250 3022 2846 404 281 173 0 chr11 78655677 78655862 -70127610 - MIR SINE MIR -5 257 41 4037 78 15 0 chr11 78656237 78656760 -70126712 - MER41A LTR ERV1 0 554 24 377 248 87 34 chr11 78656843 78656992 -70126480 - MER110A LTR ERV1 -276 192 36 362 183 44 9 chr11 78657348 78657452 -70126020 - MER39 LTR ERV1 0 658 457 789 151 8 8 chr11 78657481 78657607 -70125865 - AluJb SINE Alu -185 127 2 448 144 11 33 chr11 78657608 78657698 -70125774 - MER39 LTR ERV1 -97 610 523 22 35 0 0 chr11 78657703 78657732 -70125740 + AT_rich Low_complexity Low_complexity 1 29 0 1432 132 0 5 chr11 78657732 78657952 -70125520 - AluSg/x SINE Alu -12 300 82 619 202 177 85 chr11 78657996 78658332 -70125140 - MER39 LTR ERV1 -174 533 1 467 272 52 15 chr11 78658332 78658468 -70125004 - MIR SINE MIR -100 162 22 180 347 139 0 chr11 78659974 78660118 -70123354 + MIR SINE MIR 45 208 -54 2116 142 29 32 chr11 78660429 78660803 -70122669 + L1MB7 LINE L1 5334 5706 -478 1750 138 30 13 chr11 78660810 78661114 -70122358 + L1MB7 LINE L1 5857 6165 -19 684 56 0 0 chr11 78661629 78661718 -70121754 + (GAAA)n Simple_repeat Simple_repeat 4 92 0 2277 96 0 0 chr11 78661749 78662051 -70121421 - AluSx SINE Alu -10 302 1 553 272 95 7 chr11 78662255 78662402 -70121070 - MIR3 SINE MIR -8 200 41 43961 43 4 7 chr11 78663645 78669814 -70113658 - L1PA4 LINE L1 -2 6153 7 1966 126 23 10 chr11 78670561 78670870 -70112602 - AluSq SINE Alu 0 313 1 233 307 99 10 chr11 78671393 78671494 -70111978 + L1MEd LINE L1 522 631 -5488 1318 11 23 11 chr11 78671571 78671748 -70111724 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 318 50 0 0 chr11 78671748 78671788 -70111684 + (TTCC)n Simple_repeat Simple_repeat 2 41 0 1155 178 16 31 chr11 78671792 78672050 -70111422 - AluJb SINE Alu -1 311 58 431 252 133 82 chr11 78672096 78672475 -70110997 + L1MEd LINE L1 792 1150 -5160 2269 181 36 81 chr11 78672475 78673055 -70110417 - MLT2B3 LTR ERVL 0 554 1 431 252 133 82 chr11 78673055 78673381 -70110091 + L1MEd LINE L1 1150 1542 -4768 455 179 0 0 chr11 78673381 78673448 -70110024 - AluSp/q SINE Alu -52 261 195 1017 107 7 7 chr11 78673452 78673602 -70109870 - AluJb SINE Alu -162 150 1 2792 187 51 31 chr11 78673665 78673912 -70109560 - L1MDa LINE L1 -3221 3319 3078 2049 119 7 0 chr11 78673912 78674206 -70109266 - AluSx SINE Alu -16 296 1 2792 187 51 31 chr11 78674206 78674546 -70108926 - L1MDa LINE L1 -3462 3078 2746 1506 176 66 10 chr11 78674546 78674718 -70108754 - AluJo SINE Alu -7 305 109 252 0 0 0 chr11 78674718 78674746 -70108726 + (TG)n Simple_repeat Simple_repeat 1 28 0 1506 176 66 10 chr11 78674746 78674862 -70108610 - AluJo SINE Alu -203 109 1 2792 187 51 31 chr11 78674862 78675250 -70108222 - L1MDa LINE L1 -3794 2746 2319 180 0 0 0 chr11 78675250 78675270 -70108202 + (TA)n Simple_repeat Simple_repeat 1 20 0 2792 187 51 31 chr11 78675270 78675326 -70108146 - L1MDa LINE L1 -4221 2319 2266 2531 112 104 82 chr11 78675326 78675682 -70107790 - LTR64 LTR ERVK 0 558 184 2468 113 11 21 chr11 78675682 78676061 -70107411 + THE1C LTR MaLR 1 375 0 2531 112 104 82 chr11 78676061 78676250 -70107222 - LTR64 LTR ERVK -374 184 1 4471 177 67 16 chr11 78676250 78677216 -70106256 - L1MDa LINE L1 -4271 2269 1243 1957 141 10 0 chr11 78677216 78677506 -70105966 + AluSx SINE Alu 1 293 -19 4471 177 67 16 chr11 78677506 78677597 -70105875 - L1MDa LINE L1 -5297 1243 1158 2393 205 10 38 chr11 78677593 78678116 -70105356 - L1MDa LINE L1 -6029 511 4 * 517 312 6 0 chr11 78678196 78678366 -70105106 + HAL1 LINE L1 1433 1603 -904 241 217 217 53 chr11 78678357 78678509 -70104963 + L1ME LINE L1 5737 5913 -257 * 1362 227 63 44 chr11 78678537 78678920 -70104552 + LTR16A1 LTR ERVL 66 455 -2 527 324 66 32 chr11 78678922 78679299 -70104173 + HERV16 LTR ERVL 1 390 -4606 524 266 36 7 chr11 78679700 78679839 -70103633 - MIR SINE MIR -116 146 4 359 304 17 9 chr11 78679839 78679954 -70103518 + MIR SINE MIR 20 135 -73 359 158 206 55 chr11 78680668 78680789 -70102683 - MIR SINE MIR -57 151 12 330 261 131 45 chr11 78680927 78681103 -70102369 - MIR3 SINE MIR -11 197 7 243 279 95 34 chr11 78681058 78681205 -70102267 + MIR SINE MIR 28 183 -79 * 189 0 0 0 chr11 78682071 78682092 -70101380 + (T)n Simple_repeat Simple_repeat 1 21 0 852 173 0 36 chr11 78682204 78682372 -70101100 - AluJb SINE Alu -150 162 1 4757 88 9 0 chr11 78682372 78683005 -70100467 - L1PA15 LINE L1 -126 6039 5401 1999 141 0 0 chr11 78683807 78684106 -70099366 - AluSx SINE Alu -12 300 2 1885 66 82 4 chr11 78684116 78684392 -70099080 - AluY SINE Alu 0 304 9 22 0 0 0 chr11 78684582 78684604 -70098868 + AT_rich Low_complexity Low_complexity 1 22 0 469 159 75 0 chr11 78684736 78684843 -70098629 - L2 LINE L2 -1597 1717 1603 1243 149 24 0 chr11 78684854 78685062 -70098410 - AluJb SINE Alu -14 298 86 764 263 153 14 chr11 78685063 78685344 -70098128 - L2 LINE L2 -1769 1545 1226 24 0 0 0 chr11 78685936 78685960 -70097512 + AT_rich Low_complexity Low_complexity 1 24 0 2075 98 3 0 chr11 78685960 78686245 -70097227 - AluSq SINE Alu -27 286 1 262 158 66 66 chr11 78686357 78686433 -70097039 - L1MC3 LINE L1 -1629 6156 6081 * 2278 206 64 20 chr11 78686413 78686803 -70096669 - L1ME1 LINE L1 -102 6458 6036 1762 194 0 0 chr11 78686803 78687113 -70096359 - AluJo SINE Alu -2 310 1 2278 206 64 20 chr11 78687113 78687270 -70096202 - L1ME1 LINE L1 -524 6036 5887 * 3614 218 24 14 chr11 78687268 78687971 -70095501 - L1ME1 LINE L1 -1231 5309 4582 1718 181 3 10 chr11 78687971 78688274 -70095198 - AluJo SINE Alu -11 301 1 3614 218 24 14 chr11 78688274 78688587 -70094885 - L1ME1 LINE L1 -1958 4582 4274 555 180 170 0 chr11 78688569 78688775 -70094697 - L1ME1 LINE L1 -3151 3389 3149 * 963 122 0 34 chr11 78688775 78688923 -70094549 + FLAM_C SINE Alu 1 143 0 3438 222 71 64 chr11 78688936 78689840 -70093632 - L1ME1 LINE L1 -3382 3158 2261 2356 113 0 0 chr11 78689840 78690151 -70093321 + AluSq SINE Alu 3 313 0 3438 222 71 64 chr11 78690151 78690267 -70093205 - L1ME1 LINE L1 -4279 2261 2147 1728 158 3 41 chr11 78690267 78690558 -70092914 + AluJo SINE Alu 1 280 -32 224 59 29 0 chr11 78690561 78690595 -70092877 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3438 222 71 64 chr11 78690595 78691608 -70091864 - L1ME1 LINE L1 -4394 2146 1114 2998 163 5 48 chr11 78691621 78692185 -70091287 + MER44D DNA MER2_type 9 603 -2 440 269 5 83 chr11 78692189 78692382 -70091090 - L1ME1 LINE L1 -5420 1110 933 280 292 13 32 chr11 78692402 78692611 -70090861 - L1ME1 LINE L1 -5876 654 3 884 280 121 28 chr11 78692836 78693258 -70090214 + LTR33A LTR ERVL 1 461 -62 423 167 0 62 chr11 78693258 78693354 -70090118 - FLAM_C SINE Alu 0 143 54 1224 187 0 87 chr11 78693380 78693701 -70089771 - AluJo SINE Alu -19 293 1 1612 121 0 0 chr11 78693952 78694167 -70089305 + AluSg/x SINE Alu 72 286 -24 201 27 0 81 chr11 78694167 78694177 -70089295 + (TA)n Simple_repeat Simple_repeat 1 10 -24 2410 70 0 0 chr11 78694177 78694503 -70088969 + AluY SINE Alu 1 326 0 201 27 0 81 chr11 78694503 78694528 -70088944 + (TA)n Simple_repeat Simple_repeat 10 34 0 188 274 12 71 chr11 78695553 78695637 -70087835 - MIR SINE MIR -70 192 114 363 44 0 0 chr11 78696160 78696205 -70087267 + (TG)n Simple_repeat Simple_repeat 2 46 0 379 236 31 39 chr11 78697612 78697739 -70085733 - MIR SINE MIR -70 192 67 564 267 33 13 chr11 78698371 78698521 -70084951 + MER91A DNA MER1_type 36 188 -8 194 329 57 0 chr11 78698578 78698648 -70084824 + L2 LINE L2 3153 3226 -46 532 238 8 0 chr11 78699698 78699820 -70083652 - MIR3 SINE MIR -20 188 66 186 103 0 0 chr11 78702367 78702396 -70081076 + (CGGA)n Simple_repeat Simple_repeat 2 30 0 453 232 45 68 chr11 78703000 78703177 -70080295 + MER104 DNA Tc2 7 179 -1 2481 92 0 6 chr11 78703208 78703522 -70079950 + AluSx SINE Alu 1 312 0 1628 175 4 0 chr11 78703712 78703981 -70079491 - AluJb SINE Alu 0 312 43 1640 186 0 17 chr11 78704374 78704665 -70078807 + AluJo SINE Alu 21 306 -6 1637 208 49 49 chr11 78705067 78705476 -70077996 - LTR2 LTR ERV1 0 449 41 2347 112 0 0 chr11 78705567 78705862 -70077610 - AluSq SINE Alu -18 295 1 2241 104 0 69 chr11 78706326 78706460 -70077012 + AluSx SINE Alu 1 143 -169 1275 55 0 0 chr11 78706460 78706624 -70076848 + L1PA3 LINE L1 5992 6155 0 2241 104 0 69 chr11 78706624 78706824 -70076648 + AluSx SINE Alu 143 312 0 845 99 0 8 chr11 78707197 78707328 -70076144 + (GAA)n Simple_repeat Simple_repeat 2 131 0 2030 148 23 0 chr11 78708078 78708383 -70075089 + AluSq SINE Alu 1 312 -1 509 163 8 31 chr11 78708394 78708523 -70074949 + A-rich Low_complexity Low_complexity 5 130 0 335 295 65 73 chr11 78708909 78709002 -70074470 + L3 LINE CR1 1317 1409 -168 2314 126 3 0 chr11 78709002 78709311 -70074161 + AluSx SINE Alu 1 310 -2 335 295 65 73 chr11 78709311 78709478 -70073994 + L3 LINE CR1 1409 1575 -2 1427 219 49 3 chr11 78709522 78709809 -70073663 + AluJo SINE Alu 1 300 -12 461 167 13 0 chr11 78710647 78710725 -70072747 - MER81 DNA DNA -4 110 32 964 145 0 0 chr11 78710839 78710970 -70072502 + AluSq/x SINE Alu 1 131 -181 238 250 33 22 chr11 78710998 78711090 -70072382 - MIR SINE MIR -94 114 22 346 242 44 13 chr11 78711980 78712127 -70071345 - MIR SINE MIR -62 146 23 1988 131 19 48 chr11 78712309 78712684 -70070788 + THE1B LTR MaLR 1 364 0 826 73 0 0 chr11 78712684 78712794 -70070678 + THE1B-int LTR MaLR 1 110 -1470 369 146 0 0 chr11 78712794 78712849 -70070623 + THE1B LTR MaLR 310 364 0 184 103 0 0 chr11 78712872 78712901 -70070571 + L2 LINE L2 3029 3057 -215 192 358 60 35 chr11 78713269 78713554 -70069918 - L2 LINE L2 -401 2913 2622 306 302 151 40 chr11 78713603 78713828 -70069644 - MIR SINE MIR -1 261 12 2038 118 43 0 chr11 78713843 78714123 -70069349 + AluSx SINE Alu 1 292 -20 541 309 151 25 chr11 78714243 78714648 -70068824 - L2 LINE L2 -1036 2278 1823 1826 191 3 0 chr11 78714708 78715028 -70068444 - MLT1A1 LTR MaLR 0 365 45 624 152 0 0 chr11 78715049 78715148 -70068324 - FLAM_A SINE Alu -16 126 28 23 0 0 0 chr11 78715167 78715190 -70068282 + AT_rich Low_complexity Low_complexity 1 23 0 1749 182 14 3 chr11 78715204 78715500 -70067972 - AluJo SINE Alu -13 299 1 280 111 22 0 chr11 78715504 78715549 -70067923 - MLT1A1 LTR MaLR -319 46 1 203 262 0 117 chr11 78715556 78715701 -70067771 - L2 LINE L2 -1597 1717 1590 208 259 17 17 chr11 78715880 78715938 -70067534 + MIR SINE MIR 8 65 -197 264 59 0 0 chr11 78715997 78716031 -70067441 + (T)n Simple_repeat Simple_repeat 1 34 0 190 284 12 37 chr11 78716979 78717060 -70066412 + MIR SINE MIR 13 91 -171 2321 95 0 0 chr11 78717076 78717360 -70066112 - AluSx SINE Alu -13 299 16 605 157 157 0 chr11 78717377 78717511 -70065961 - L1MB3 LINE L1 0 6183 6029 283 276 105 0 chr11 78718519 78718624 -70064848 + MIR SINE MIR 46 161 -101 * 909 168 152 0 chr11 78718623 78718820 -70064652 - MIR SINE MIR -21 241 15 195 338 15 0 chr11 78718932 78719000 -70064472 + MIR3 SINE MIR 87 155 -53 1763 147 35 25 chr11 78719292 78719578 -70063894 - AluJo SINE Alu -23 289 1 506 251 52 28 chr11 78720214 78720421 -70063051 - MIR SINE MIR -50 212 3 963 229 31 74 chr11 78721017 78721340 -70062132 + AluSg1 SINE Alu 1 309 0 538 273 21 71 chr11 78721904 78722142 -70061330 - MIR SINE MIR -1 261 36 452 328 105 0 chr11 78722185 78722356 -70061116 + MIR SINE MIR 74 262 0 26 0 0 0 chr11 78722594 78722620 -70060852 + AT_rich Low_complexity Low_complexity 1 26 0 1040 152 6 18 chr11 78722698 78722869 -70060603 + AluJb SINE Alu 1 169 -143 4727 115 105 78 chr11 78722869 78724335 -70059137 + pTR5 LTR ERV1 67 2429 -9 367 296 78 63 chr11 78724472 78724884 -70058588 - L1MC4a LINE L1 -105 6016 5599 1943 139 3 56 chr11 78725914 78726238 -70057234 + AluSx SINE Alu 1 307 -5 1620 213 33 6 chr11 78726540 78727029 -70056443 - L1M4 LINE L1 -2796 3350 2849 22 56 0 19 chr11 78727287 78727324 -70056148 + AT_rich Low_complexity Low_complexity 1 38 -15 2198 112 0 0 chr11 78727324 78727609 -70055863 + AluSx SINE Alu 1 285 -27 22 56 0 19 chr11 78727609 78727625 -70055847 + AT_rich Low_complexity Low_complexity 38 53 0 311 290 226 0 chr11 78728597 78728752 -70054720 + MIR SINE MIR 63 252 -10 483 284 45 19 chr11 78728903 78729058 -70054414 - MIR SINE MIR -3 259 101 194 150 25 0 chr11 78729519 78729559 -70053913 + CT-rich Low_complexity Low_complexity 6 46 0 295 298 8 8 chr11 78729570 78729691 -70053781 + CT-rich Low_complexity Low_complexity 2 122 0 239 227 15 15 chr11 78730603 78730669 -70052803 + MIR SINE MIR 75 140 -68 2342 107 3 0 chr11 78730917 78731216 -70052256 + AluSx SINE Alu 1 300 -12 325 256 23 0 chr11 78732047 78732133 -70051339 - MIR SINE MIR 0 262 175 203 188 0 21 chr11 78732145 78732193 -70051279 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 436 214 17 0 chr11 78732322 78732439 -70051033 + (TCCA)n Simple_repeat Simple_repeat 1 119 0 196 295 122 29 chr11 78732499 78732638 -70050834 - L2 LINE L2 -91 3181 3030 236 330 27 18 chr11 78733200 78733312 -70050160 + MIR3 SINE MIR 90 202 -6 288 320 21 0 chr11 78733315 78733412 -70050060 - L2 LINE L2 0 3272 3174 337 245 88 0 chr11 78733473 78733575 -70049897 - MIR SINE MIR -69 193 83 2335 107 3 0 chr11 78733652 78733962 -70049510 - AluSx SINE Alu -1 311 1 300 259 0 0 chr11 78733968 78734047 -70049425 - MIR SINE MIR -61 147 76 308 350 53 0 chr11 78734407 78734613 -70048859 + L2 LINE L2 2819 3035 -237 740 247 134 13 chr11 78734683 78734914 -70048558 + MIR SINE MIR 4 262 0 429 244 121 7 chr11 78735600 78735756 -70047716 + MIR SINE MIR 36 206 -56 182 234 64 0 chr11 78736024 78736071 -70047401 + L3 LINE CR1 1511 1560 -17 1729 184 27 3 chr11 78737033 78737327 -70046145 - AluJo SINE Alu -11 301 1 259 279 52 93 chr11 78737467 78737639 -70045833 - MER5A DNA MER1_type -9 180 16 231 88 0 0 chr11 78737686 78737720 -70045752 + (GGA)n Simple_repeat Simple_repeat 2 35 0 869 240 74 5 chr11 78737723 78737940 -70045532 - MIR SINE MIR -29 233 2 409 252 16 16 chr11 78737947 78738070 -70045402 - MIR3 SINE MIR -73 135 13 2452 81 0 0 chr11 78738417 78738712 -70044760 + AluY SINE Alu 1 295 -16 323 318 62 45 chr11 78738762 78738938 -70044534 - MIR SINE MIR -78 184 6 257 366 50 12 chr11 78739022 78739183 -70044289 - L2 LINE L2 -219 3053 2887 206 267 0 0 chr11 78739363 78739423 -70044049 - MIR SINE MIR -72 136 77 2086 117 52 0 chr11 78739580 78739871 -70043601 - AluSx SINE Alu -6 306 1 217 255 37 46 chr11 78740632 78740718 -70042754 + MIR SINE MIR 63 156 -52 216 0 0 0 chr11 78742945 78742969 -70040503 + (CA)n Simple_repeat Simple_repeat 2 25 0 2247 164 82 27 chr11 78743234 78743583 -70039889 - LTR32 LTR ERVL 0 471 92 2247 130 7 0 chr11 78743583 78743891 -70039581 + AluSx SINE Alu 1 310 -2 2247 164 82 27 chr11 78743891 78743980 -70039492 - LTR32 LTR ERVL -379 92 9 246 303 0 0 chr11 78744024 78744090 -70039382 + MIR SINE MIR 131 196 -66 21 36 0 0 chr11 78744244 78744272 -70039200 + AT_rich Low_complexity Low_complexity 1 28 0 3245 139 42 5 chr11 78744274 78744863 -70038609 - L1MA8 LINE L1 -4 6287 5677 564 168 120 74 chr11 78744937 78744988 -70038484 - L1MA3 LINE L1 0 6302 6255 2493 86 0 10 chr11 78744988 78745302 -70038170 - AluSq SINE Alu -2 311 1 564 168 120 74 chr11 78745302 78745495 -70037977 - L1MA3 LINE L1 -47 6255 6047 1417 117 188 0 chr11 78745496 78745761 -70037711 - AluSx SINE Alu 0 310 1 1876 146 4 0 chr11 78745777 78746052 -70037420 - AluSx SINE Alu -2 310 35 1265 135 27 0 chr11 78746052 78746309 -70037163 - L1MA3 LINE L1 -572 5728 5460 709 244 67 0 chr11 78746474 78746654 -70036818 - MIR SINE MIR -8 254 63 2302 115 0 13 chr11 78746856 78747170 -70036302 + AluSx SINE Alu 1 310 -2 455 194 116 64 chr11 78748031 78748226 -70035246 + MIR SINE MIR 16 210 -41 2212 110 10 0 chr11 78748231 78748523 -70034949 + AluSx SINE Alu 1 295 -17 1348 166 76 0 chr11 78748839 78749140 -70034332 - MER33 DNA MER1_type 0 324 1 1758 180 4 0 chr11 78749302 78749580 -70033892 - AluJo SINE Alu -19 293 15 291 325 60 9 chr11 78749583 78749715 -70033757 + MIR SINE MIR 17 156 -52 384 341 7 22 chr11 78749973 78750108 -70033364 - L2 LINE L2 -6 3266 3134 231 203 16 47 chr11 78751179 78751243 -70032229 - L3 LINE CR1 -109 1468 1407 1935 140 0 53 chr11 78751272 78751359 -70032113 - AluJb SINE Alu -7 305 215 3380 127 35 0 chr11 78751359 78751894 -70031578 - MER41C LTR ERV1 0 554 1 1935 140 0 53 chr11 78751894 78751983 -70031489 - AluJb SINE Alu -97 215 123 2333 105 0 0 chr11 78751983 78752279 -70031193 - AluSx SINE Alu -16 296 1 1935 140 0 53 chr11 78752279 78752423 -70031049 - AluJb SINE Alu -189 123 1 291 315 92 0 chr11 78752511 78752641 -70030831 + MIR SINE MIR 70 211 -51 578 247 13 32 chr11 78752685 78752839 -70030633 + MIR SINE MIR 17 167 -95 298 307 69 0 chr11 78752894 78752995 -70030477 + MIR SINE MIR 155 262 0 534 276 0 32 chr11 78753272 78753457 -70030015 + (ATGGTG)n Simple_repeat Simple_repeat 1 179 0 203 336 26 0 chr11 78753540 78753656 -70029816 + (ATGGTG)n Simple_repeat Simple_repeat 6 124 0 2070 134 34 0 chr11 78754214 78754505 -70028967 + AluSq SINE Alu 1 301 -12 241 238 32 0 chr11 78754814 78754877 -70028595 + MIR3 SINE MIR 101 165 -43 468 293 31 47 chr11 78755016 78755207 -70028265 + MIR SINE MIR 21 208 -54 1845 146 3 51 chr11 78755435 78755750 -70027722 + AluJo SINE Alu 1 300 -12 183 271 82 47 chr11 78756945 78757030 -70026442 + MIR SINE MIR 32 119 -89 430 288 146 28 chr11 78758027 78758239 -70025233 - L2 LINE L2 -1 3312 3076 322 291 19 0 chr11 78758351 78758454 -70025018 + (GAATG)n Simple_repeat Simple_repeat 3 107 0 295 313 15 30 chr11 78758489 78758534 -70024938 + (GAATG)n Simple_repeat Simple_repeat 3 47 -87 1812 144 43 0 chr11 78758534 78758812 -70024660 + AluSx SINE Alu 1 290 -22 295 313 15 30 chr11 78758812 78758900 -70024572 + (GAATG)n Simple_repeat Simple_repeat 47 134 0 232 255 28 97 chr11 78759721 78759866 -70023606 + L3 LINE CR1 1408 1542 -35 382 266 109 1 chr11 78760813 78760944 -70022528 - MIR SINE MIR -62 146 51 230 250 200 20 chr11 78762088 78762188 -70021284 - L3 LINE CR1 -107 1470 1353 2064 109 53 3 chr11 78762618 78762903 -70020569 + AluSq SINE Alu 1 299 -14 215 336 94 13 chr11 78763071 78763220 -70020252 - L2 LINE L2 -198 3074 2914 224 289 69 19 chr11 78763257 78763416 -70020056 - L2 LINE L2 -460 2854 2688 291 214 14 0 chr11 78763488 78763558 -70019914 - L2 LINE L2 -2 3270 3200 395 276 28 28 chr11 78764005 78764150 -70019322 + MIR SINE MIR 51 195 -67 186 250 16 62 chr11 78764102 78764166 -70019306 - MIR SINE MIR -15 247 187 * 293 274 103 8 chr11 78764263 78764380 -70019092 - MIR SINE MIR -63 145 18 368 272 67 3 chr11 78766287 78766457 -70017015 - MIR SINE MIR -60 148 13 4075 168 99 10 chr11 78766776 78766787 -70016685 - MER21B LTR ERV1 -2 861 852 2330 95 13 0 chr11 78766787 78767093 -70016379 - AluSx SINE Alu -2 310 1 4075 168 99 10 chr11 78767093 78767872 -70015600 - MER21B LTR ERV1 -11 852 1 477 279 184 0 chr11 78768060 78768261 -70015211 + MIR SINE MIR 13 250 -12 392 194 82 10 chr11 78769364 78769462 -70014010 - MIR SINE MIR -59 149 45 330 238 164 0 chr11 78769519 78769641 -70013831 + MIR3 SINE MIR 7 148 -60 395 288 34 0 chr11 78770420 78770538 -70012934 + MIR SINE MIR 31 152 -56 397 255 20 0 chr11 78772266 78772364 -70011108 - MIR SINE MIR -109 153 54 577 200 190 19 chr11 78772369 78772574 -70010898 - MER69 DNA AcHobo -13 2513 2274 * 2259 198 57 69 chr11 78772566 78773158 -70010314 - MER69 DNA AcHobo -640 586 2 211 295 6 131 chr11 78773648 78773831 -70009641 + L2 LINE L2 2884 3043 -229 544 253 42 36 chr11 78774065 78774231 -70009241 + MIR SINE MIR 36 202 -60 358 296 128 59 chr11 78774644 78775083 -70008389 - L2 LINE L2 0 3272 2804 213 372 39 8 chr11 78775168 78775297 -70008175 - L2 LINE L2 -575 2739 2607 372 333 50 9 chr11 78775318 78775537 -70007935 - L2 LINE L2 -216 3056 2829 343 222 0 0 chr11 78775773 78775845 -70007627 - MIR SINE MIR -109 153 82 382 286 91 13 chr11 78776084 78776238 -70007234 + MIR SINE MIR 31 196 -66 1064 217 37 71 chr11 78776248 78776283 -70007189 - MLT1F1 LTR MaLR -5 562 527 1612 180 0 71 chr11 78776283 78776605 -70006867 + AluJb SINE Alu 6 304 -8 1064 217 37 71 chr11 78776605 78776864 -70006608 - MLT1F1 LTR MaLR -40 527 278 778 224 6 6 chr11 78776867 78777028 -70006444 - MLT1F1 LTR MaLR -381 161 1 210 308 0 0 chr11 78777028 78777080 -70006392 + L2 LINE L2 3251 3302 -11 420 301 193 26 chr11 78777382 78777770 -70005702 + MLT1L LTR MaLR 146 598 -17 431 217 43 0 chr11 78777835 78777950 -70005522 + MIR3 SINE MIR 3 122 -86 630 268 0 0 chr11 78777955 78778115 -70005357 - MIR SINE MIR -1 261 103 208 328 0 0 chr11 78778150 78778214 -70005258 + MIR3 SINE MIR 136 199 -9 588 229 100 18 chr11 78778250 78778420 -70005052 + L3 LINE CR1 1205 1388 -189 208 186 68 17 chr11 78779222 78779281 -70004191 + L2 LINE L2 2994 3055 -217 2244 99 3 10 chr11 78779670 78779974 -70003498 + AluSc SINE Alu 1 302 -7 443 325 48 32 chr11 78780672 78780860 -70002612 + MIR3 SINE MIR 9 199 -9 393 253 20 10 chr11 78780873 78780972 -70002500 - MIR SINE MIR -92 116 17 198 169 89 0 chr11 78781199 78781244 -70002228 - MIR SINE MIR -86 122 73 186 359 53 24 chr11 78781428 78781598 -70001874 + L2 LINE L2 2917 3091 -181 404 288 30 0 chr11 78781748 78781759 -70001713 + (TGGA)n Simple_repeat Simple_repeat 4 13 -126 2251 123 0 3 chr11 78781759 78782059 -70001413 + AluSq SINE Alu 1 299 -14 404 288 30 0 chr11 78782059 78782179 -70001293 + (TGGA)n Simple_repeat Simple_repeat 13 139 0 296 413 12 0 chr11 78782096 78782268 -70001204 + (TGGG)n Simple_repeat Simple_repeat 3 176 0 * 1394 110 29 5 chr11 78782348 78782557 -70000915 + L1PA10 LINE L1 5909 6122 -46 423 370 22 0 chr11 78782727 78782911 -70000561 + L3 LINE CR1 900 1087 -490 1751 168 27 94 chr11 78782956 78783362 -70000110 + MSTD LTR MaLR 16 394 -2 526 360 111 6 chr11 78783406 78783767 -69999705 + L3 LINE CR1 1174 1572 -5 343 314 73 78 chr11 78784588 78785012 -69998460 - L2 LINE L2 -41 3231 2810 917 142 0 0 chr11 78786021 78786141 -69997331 + FLAM_C SINE Alu 1 120 -23 228 35 0 0 chr11 78786141 78786170 -69997302 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 230 266 43 21 chr11 78786193 78786287 -69997185 - LTR67 LTR ERVL -22 535 440 2571 80 8 3 chr11 78786824 78787187 -69996285 - L1PA13 LINE L1 0 6163 5799 522 275 15 0 chr11 78787194 78787325 -69996147 - MIR SINE MIR -77 185 53 405 224 105 40 chr11 78787424 78787576 -69995896 + L1ME4a LINE L1 5960 6121 0 1001 140 7 7 chr11 78787588 78787771 -69995701 - FRAM SINE Alu 0 180 1 1747 168 0 75 chr11 78787778 78787973 -69995499 - AluJb SINE Alu -3 309 148 2117 125 0 3 chr11 78787973 78788262 -69995210 - AluSx SINE Alu -24 288 1 1747 168 0 75 chr11 78788262 78788400 -69995072 - AluJb SINE Alu -164 148 1 308 189 198 0 chr11 78788449 78788555 -69994917 + L1ME4a LINE L1 5956 6082 -39 23 54 0 0 chr11 78788560 78788597 -69994875 + AT_rich Low_complexity Low_complexity 1 37 0 1944 185 0 3 chr11 78788605 78788918 -69994554 + AluSx SINE Alu 1 312 0 209 259 12 47 chr11 78789581 78789666 -69993806 + CT-rich Low_complexity Low_complexity 3 84 0 206 313 0 0 chr11 78790129 78790193 -69993279 - L3 LINE CR1 -109 1468 1405 297 263 92 69 chr11 78790198 78790415 -69993057 - L2 LINE L2 -22 3250 3029 1174 303 141 16 chr11 78790454 78791078 -69992394 + L2 LINE L2 2195 2896 -418 1945 121 25 0 chr11 78791396 78791678 -69991794 - AluSx SINE Alu -19 293 5 365 311 105 29 chr11 78792196 78792316 -69991156 + MIR SINE MIR 23 132 -130 853 171 33 0 chr11 78792316 78792468 -69991004 + L1PB4 LINE L1 6000 6156 0 365 311 105 29 chr11 78792468 78792556 -69990916 + MIR SINE MIR 132 247 -15 737 332 85 48 chr11 78792583 78792942 -69990530 - L3 LINE CR1 -733 844 459 2176 99 0 0 chr11 78792942 78793235 -69990237 + AluSx SINE Alu 1 293 -19 737 332 85 48 chr11 78793235 78793390 -69990082 - L3 LINE CR1 -1118 459 311 2395 14 4 0 chr11 78793834 78794109 -69989363 + AluYa5 SINE Alu 36 311 0 584 208 47 75 chr11 78794416 78794544 -69988928 + MIR SINE MIR 2 132 -130 1755 160 0 7 chr11 78794544 78794832 -69988640 - AluJb SINE Alu -21 291 6 584 208 47 75 chr11 78794832 78794852 -69988620 + MIR SINE MIR 132 151 -111 2122 104 10 3 chr11 78794852 78795151 -69988321 + AluSx SINE Alu 1 301 -11 584 208 47 75 chr11 78795151 78795213 -69988259 + MIR SINE MIR 151 207 -55 188 345 97 26 chr11 78795810 78795923 -69987549 - L2 LINE L2 -16 3256 3136 309 337 0 96 chr11 78795957 78796135 -69987337 + MIR SINE MIR 85 245 -17 209 205 0 0 chr11 78796140 78796179 -69987293 + CT-rich Low_complexity Low_complexity 3 41 0 1668 166 7 14 chr11 78797993 78798283 -69985189 + AluJo SINE Alu 1 288 -24 186 167 0 0 chr11 78798283 78798319 -69985153 + (CAAG)n Simple_repeat Simple_repeat 4 39 0 211 200 12 38 chr11 78798894 78798974 -69984498 + (CACCAT)n Simple_repeat Simple_repeat 4 81 0 645 269 82 45 chr11 78799156 78799487 -69983985 + MLT1J LTR MaLR 167 509 -2 862 231 93 29 chr11 78800146 78800543 -69982929 - MLT1H LTR MaLR 0 588 104 276 322 99 11 chr11 78800892 78801022 -69982450 + MIR SINE MIR 13 133 -75 315 130 0 0 chr11 78801247 78801301 -69982171 + (GGGAA)n Simple_repeat Simple_repeat 4 57 0 240 338 6 32 chr11 78801492 78801649 -69981823 - MIR3 SINE MIR -9 199 47 1361 95 5 20 chr11 78802313 78802513 -69980959 - AluY SINE Alu -114 197 1 252 312 5 48 chr11 78803208 78803347 -69980125 + MIR SINE MIR 41 174 -60 233 200 57 36 chr11 78807206 78807346 -69976126 + (CGCTG)n Simple_repeat Simple_repeat 3 145 0 226 243 29 29 chr11 78807488 78807624 -69975848 + (CCGCG)n Simple_repeat Simple_repeat 5 140 0 39 22 0 0 chr11 78807900 78807946 -69975526 + GC_rich Low_complexity Low_complexity 1 46 0 230 229 16 16 chr11 78809610 78809671 -69973801 + L3b LINE CR1 1323 1383 -200 237 326 121 21 chr11 78810627 78810768 -69972704 + L3 LINE CR1 876 1030 -547 363 352 153 7 chr11 78811057 78811338 -69972134 - L2 LINE L2 -96 3176 2855 199 315 0 0 chr11 78811519 78811573 -69971899 - L2 LINE L2 -38 3234 3181 195 313 24 36 chr11 78812078 78812161 -69971311 + MIR3 SINE MIR 11 92 -116 307 195 146 0 chr11 78812174 78812256 -69971216 - L2 LINE L2 -15 3298 3205 298 283 35 35 chr11 78812578 78812723 -69970749 - MIR3 SINE MIR -19 189 45 311 234 65 0 chr11 78813180 78813257 -69970215 + MER94 DNA DNA 20 101 -33 2040 107 44 3 chr11 78813257 78813555 -69969917 + AluSp SINE Alu 1 310 -3 214 309 24 32 chr11 78813679 78813805 -69969667 + L2 LINE L2 2849 2973 -299 860 214 28 6 chr11 78814281 78814459 -69969013 - AluJo SINE Alu -9 303 122 333 198 0 66 chr11 78814664 78814755 -69968717 - L2 LINE L2 -1 3271 3187 1882 150 0 6 chr11 78814758 78815071 -69968401 + AluJb SINE Alu 1 311 -1 924 256 43 0 chr11 78815109 78815343 -69968129 - MIR SINE MIR 0 262 19 349 278 112 21 chr11 78815369 78815556 -69967916 - L2 LINE L2 -185 3128 2925 254 344 97 47 chr11 78815659 78815832 -69967640 + L2 LINE L2 2599 2762 -510 564 203 25 34 chr11 78815832 78815982 -69967490 + FLAM_C SINE Alu 1 149 0 254 344 97 47 chr11 78815982 78816213 -69967259 + L2 LINE L2 2762 3023 -249 2095 106 33 3 chr11 78816213 78816516 -69966956 + AluSx SINE Alu 1 312 0 193 354 16 47 chr11 78816680 78816731 -69966741 + L2 LINE L2 3133 3184 -88 2291 97 0 0 chr11 78816731 78817041 -69966431 - AluSx SINE Alu -2 310 1 193 354 16 47 chr11 78817041 78817116 -69966356 + L2 LINE L2 3184 3255 -17 238 158 66 66 chr11 78817153 78817229 -69966243 - L1MC3 LINE L1 -1629 6156 6081 * 2173 215 60 16 chr11 78817209 78817599 -69965873 - L1ME1 LINE L1 -102 6458 6036 1803 194 0 0 chr11 78817599 78817909 -69965563 - AluJo SINE Alu -2 310 1 2173 215 60 16 chr11 78817909 78818066 -69965406 - L1ME1 LINE L1 -524 6036 5887 * 3918 222 31 13 chr11 78818049 78818767 -69964705 - L1ME1 LINE L1 -1216 5324 4580 1607 181 3 10 chr11 78818767 78819070 -69964402 - AluJo SINE Alu -11 301 1 3918 222 31 13 chr11 78819070 78819383 -69964089 - L1ME1 LINE L1 -1960 4580 4274 540 180 170 0 chr11 78819365 78819571 -69963901 - L1ME1 LINE L1 -3151 3389 3149 * 904 122 0 34 chr11 78819571 78819719 -69963753 + FLAM_C SINE Alu 1 143 0 3382 225 70 64 chr11 78819732 78820636 -69962836 - L1ME1 LINE L1 -3382 3158 2261 2226 113 0 0 chr11 78820636 78820947 -69962525 + AluSq SINE Alu 3 313 0 3382 225 70 64 chr11 78820947 78821063 -69962409 - L1ME1 LINE L1 -4279 2261 2147 1602 158 3 41 chr11 78821063 78821354 -69962118 + AluJo SINE Alu 1 280 -32 224 59 29 0 chr11 78821357 78821391 -69962081 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3382 225 70 64 chr11 78821391 78822404 -69961068 - L1ME1 LINE L1 -4394 2146 1114 3003 162 3 53 chr11 78822417 78822985 -69960487 + MER44D DNA MER2_type 9 603 -2 449 272 6 60 chr11 78822989 78823182 -69960290 - L1ME1 LINE L1 -5420 1110 933 285 295 13 31 chr11 78823202 78823411 -69960061 - L1ME1 LINE L1 -5876 654 3 910 280 121 28 chr11 78823636 78824058 -69959414 + LTR33A LTR ERVL 1 461 -62 498 146 0 62 chr11 78824058 78824154 -69959318 - FLAM_C SINE Alu 0 143 54 1597 153 0 64 chr11 78824178 78824492 -69958980 - AluJo SINE Alu -18 294 1 1499 126 0 0 chr11 78824743 78824958 -69958514 + AluSg/x SINE Alu 72 286 -24 201 27 0 81 chr11 78824958 78824968 -69958504 + (TA)n Simple_repeat Simple_repeat 1 10 -24 2271 70 0 0 chr11 78824968 78825290 -69958182 + AluY SINE Alu 1 322 0 201 27 0 81 chr11 78825290 78825315 -69958157 + (TA)n Simple_repeat Simple_repeat 10 34 0 195 298 0 60 chr11 78826340 78826424 -69957048 - MIR SINE MIR -70 192 114 345 47 0 0 chr11 78826947 78826990 -69956482 + (TG)n Simple_repeat Simple_repeat 2 44 0 394 244 30 38 chr11 78828393 78828524 -69954948 - MIR SINE MIR -66 196 67 575 273 30 18 chr11 78829141 78829306 -69954166 + MER91A DNA MER1_type 22 188 -8 205 329 57 0 chr11 78829363 78829433 -69954039 + L2 LINE L2 3153 3226 -46 542 238 8 0 chr11 78830483 78830605 -69952867 - MIR3 SINE MIR -20 188 66 186 103 0 0 chr11 78833150 78833179 -69950293 + (CGGA)n Simple_repeat Simple_repeat 2 30 0 451 232 45 68 chr11 78833783 78833960 -69949512 + MER104 DNA Tc2 7 179 -1 2342 92 0 6 chr11 78833991 78834305 -69949167 + AluSx SINE Alu 1 312 0 632 253 148 5 chr11 78835412 78835614 -69947858 - MIR SINE MIR -22 240 10 1684 157 0 62 chr11 78835968 78836117 -69947355 + AluSx SINE Alu 1 121 -191 2309 88 0 0 chr11 78836117 78836413 -69947059 + AluSg1 SINE Alu 1 296 -13 1684 157 0 62 chr11 78836413 78836588 -69946884 + AluSx SINE Alu 121 305 -7 215 303 61 20 chr11 78836807 78836906 -69946566 + L2 LINE L2 3169 3271 -1 199 204 23 0 chr11 78837356 78837400 -69946072 + L3 LINE CR1 1530 1574 -3 288 203 116 0 chr11 78838170 78838239 -69945233 + MIR3 SINE MIR 110 186 -22 335 331 0 16 chr11 78838417 78838541 -69944931 + GA-rich Low_complexity Low_complexity 2 123 0 2341 73 0 3 chr11 78840268 78840568 -69942904 + AluY SINE Alu 1 299 -12 1749 156 7 14 chr11 78840580 78840868 -69942604 + AluJo SINE Alu 4 289 -23 442 50 0 0 chr11 78840868 78840928 -69942544 + (TTTTA)n Simple_repeat Simple_repeat 2 165 0 1970 122 0 0 chr11 78840928 78841199 -69942273 - AluSx SINE Alu -27 285 15 300 349 121 0 chr11 78841425 78841591 -69941881 + MIR SINE MIR 21 206 -56 449 219 95 0 chr11 78843646 78843751 -69939721 + MIR3 SINE MIR 81 195 -13 350 345 0 9 chr11 78844900 78845013 -69938459 + L2 LINE L2 3197 3308 -5 702 233 29 94 chr11 78845291 78845427 -69938045 + MIR SINE MIR 33 148 -114 2020 144 0 3 chr11 78845427 78845739 -69937733 - AluSx SINE Alu 0 312 2 702 233 29 94 chr11 78845739 78845847 -69937625 + MIR SINE MIR 148 261 -1 180 264 38 0 chr11 78846955 78847008 -69936464 - MIR3 SINE MIR -32 176 122 258 225 70 0 chr11 78847278 78847349 -69936123 - MIR SINE MIR -76 186 111 253 167 60 2 chr11 78847365 78847420 -69936052 + MIR SINE MIR 99 156 -52 1926 191 110 22 chr11 78848045 78848507 -69934965 + MLT1D LTR MaLR 1 503 -2 186 258 152 0 chr11 78850255 78850321 -69933151 + MIR SINE MIR 77 152 -110 806 277 57 38 chr11 78850327 78850393 -69933079 - MER46C DNA MER2_type -18 320 257 1873 139 4 0 chr11 78850393 78850695 -69932777 + AluSx SINE Alu 1 303 0 806 277 57 38 chr11 78850695 78850941 -69932531 - MER46C DNA MER2_type -81 257 1 236 239 18 124 chr11 78850942 78851055 -69932417 + MIR SINE MIR 154 254 -8 1877 111 39 23 chr11 78852022 78852329 -69931143 - AluSx SINE Alu 0 312 1 703 256 6 0 chr11 78852329 78852493 -69930979 + MER20 DNA MER1_type 55 219 0 464 282 35 14 chr11 78852636 78852778 -69930694 + MIR SINE MIR 21 165 -97 339 181 69 0 chr11 78853341 78853413 -69930059 - MIR SINE MIR -79 183 107 2179 106 0 19 chr11 78853615 78853927 -69929545 - AluSq SINE Alu -7 306 1 552 218 28 7 chr11 78853934 78854076 -69929396 - L1MA8 LINE L1 -3 6288 6144 1862 125 82 0 chr11 78854375 78854655 -69928817 - AluSx SINE Alu -9 303 1 503 270 29 78 chr11 78854723 78854927 -69928545 + MER117 DNA MER1_type 2 195 -2 182 333 83 48 chr11 78855088 78855316 -69928156 + L2 LINE L2 3022 3257 -15 549 277 248 17 chr11 78856122 78856350 -69927122 + L2 LINE L2 2814 2988 -325 1549 148 6 85 chr11 78856350 78856667 -69926805 - AluJb SINE Alu -20 292 1 549 277 248 17 chr11 78856667 78856832 -69926640 + L2 LINE L2 2988 3114 -199 1883 123 56 0 chr11 78856832 78857116 -69926356 + AluSg SINE Alu 1 300 -10 207 69 0 0 chr11 78857163 78857192 -69926280 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 201 276 152 19 chr11 78857192 78857297 -69926175 - MIR SINE MIR -56 152 34 2189 104 0 3 chr11 78857895 78858203 -69925269 - AluSx SINE Alu -5 307 1 508 318 18 29 chr11 78858570 78858740 -69924732 - MIR SINE MIR -75 187 20 216 216 0 39 chr11 78859048 78859099 -69924373 - MIR SINE MIR -65 143 95 318 281 59 15 chr11 78859960 78860021 -69923451 - MER112 DNA MER1_type -1 259 202 2003 100 0 53 chr11 78860021 78860371 -69923101 + AluSx SINE Alu 1 334 0 318 281 59 15 chr11 78860371 78860443 -69923029 - MER112 DNA MER1_type -58 202 119 1029 273 111 26 chr11 78860443 78860637 -69922835 + MLT1I LTR MaLR 1 177 -232 2220 181 30 79 chr11 78860637 78860704 -69922768 - MLT1D LTR MaLR 0 505 436 1986 145 7 0 chr11 78860704 78861007 -69922465 + AluJb SINE Alu 1 305 -7 2220 181 30 79 chr11 78861007 78861468 -69922004 - MLT1D LTR MaLR -69 436 3 1029 273 111 26 chr11 78861468 78861650 -69921822 + MLT1I LTR MaLR 177 409 0 2232 117 0 3 chr11 78861663 78861971 -69921501 + AluSx SINE Alu 1 307 -5 316 262 107 0 chr11 78861971 78862074 -69921398 - MER112 DNA MER1_type -146 114 1 1807 123 60 3 chr11 78862437 78862721 -69920751 - AluSg SINE Alu -10 300 1 334 289 55 8 chr11 78862722 78862850 -69920622 + L1ME4a LINE L1 5791 5924 -197 2005 208 28 19 chr11 78862874 78863341 -69920131 + L1MB7 LINE L1 4524 4994 -1152 2362 84 3 0 chr11 78863344 78863652 -69919820 + AluSx SINE Alu 1 309 -3 2398 84 0 0 chr11 78863782 78864090 -69919382 + AluSx SINE Alu 5 312 0 3972 169 37 44 chr11 78864093 78864286 -69919186 + L1MB7 LINE L1 4993 5186 -998 1374 36 6 0 chr11 78864286 78864453 -69919019 + L1PA6 LINE L1 5987 6154 0 3972 169 37 44 chr11 78864453 78865437 -69918035 + L1MB7 LINE L1 5186 6168 -16 458 303 43 67 chr11 78865796 78866050 -69917422 + L2 LINE L2 3019 3266 -6 2284 88 7 0 chr11 78866122 78866430 -69917042 + AluSg SINE Alu 1 310 0 1015 222 23 5 chr11 78866473 78866694 -69916778 - MIR SINE MIR -36 226 2 2072 107 0 17 chr11 78866746 78866881 -69916591 + AluSc SINE Alu 1 137 -172 2577 23 0 7 chr11 78866881 78867191 -69916281 + AluY SINE Alu 1 308 -3 2072 107 0 17 chr11 78867191 78867354 -69916118 + AluSc SINE Alu 137 294 -15 208 308 29 29 chr11 78868120 78868224 -69915248 - MIR3 SINE MIR -18 190 87 278 307 117 15 chr11 78868765 78868902 -69914570 + MIR SINE MIR 20 170 -92 249 33 0 0 chr11 78869184 78869214 -69914258 + (TTA)n Simple_repeat Simple_repeat 2 31 0 2157 93 0 0 chr11 78869216 78869494 -69913978 - AluSx SINE Alu -30 282 5 226 342 52 13 chr11 78869547 78869702 -69913770 + L2 LINE L2 2943 3103 -169 214 304 0 0 chr11 78869702 78869758 -69913714 + CT-rich Low_complexity Low_complexity 3 58 0 224 136 45 0 chr11 78870117 78870161 -69913311 + L2 LINE L2 3267 3312 -1 476 202 11 0 chr11 78870673 78870762 -69912710 - MER63B DNA MER1_type -4 430 341 1075 149 56 47 chr11 78870766 78870980 -69912492 + MER20 DNA MER1_type 4 219 0 790 150 63 0 chr11 78870983 78871110 -69912362 + FLAM_C SINE Alu 6 140 -3 1154 170 61 102 chr11 78871139 78871208 -69912264 - MER63B DNA MER1_type -734 328 258 1937 114 0 66 chr11 78871208 78871542 -69911930 - AluSx SINE Alu 0 312 1 1154 170 61 102 chr11 78871542 78871814 -69911658 - MER63B DNA MER1_type -804 258 1 204 295 49 0 chr11 78872742 78872803 -69910669 - MIR3 SINE MIR -52 156 93 2142 105 0 3 chr11 78874661 78874955 -69908517 + AluSg SINE Alu 1 293 -17 696 226 0 0 chr11 78874971 78875095 -69908377 - FLAM_A SINE Alu -8 125 2 277 312 176 6 chr11 78875131 78875301 -69908171 - MIR SINE MIR -44 218 20 235 321 24 0 chr11 78876530 78876614 -69906858 - L2 LINE L2 -46 3226 3141 2184 114 3 0 chr11 78877252 78877558 -69905914 + AluSq SINE Alu 1 307 -6 242 306 74 19 chr11 78877625 78877733 -69905739 - L2 LINE L2 -222 3050 2937 339 276 67 30 chr11 78878654 78878718 -69904754 - MIR SINE MIR -32 230 170 2308 195 62 15 chr11 78878718 78879199 -69904273 + MLT1D LTR MaLR 1 504 -1 339 276 67 30 chr11 78879199 78879268 -69904204 - MIR SINE MIR -92 170 92 2079 115 7 0 chr11 78879268 78879563 -69903909 + AluSx SINE Alu 1 297 -15 310 273 76 23 chr11 78879898 78880030 -69903442 - MIR SINE MIR -66 196 58 180 313 31 0 chr11 78880076 78880140 -69903332 - MIR SINE MIR -16 246 181 181 333 29 14 chr11 78880192 78880330 -69903142 + L2 LINE L2 2798 2937 -377 1918 118 17 20 chr11 78880808 78881104 -69902368 - AluJb SINE Alu -17 295 1 180 0 0 0 chr11 78881249 78881269 -69902203 + (CCA)n Simple_repeat Simple_repeat 2 21 0 4427 149 118 1 chr11 78881299 78882103 -69901369 - MER54A LTR ERVL 0 901 4 2185 90 10 0 chr11 78882247 78882537 -69900935 + AluSx SINE Alu 5 297 -15 586 242 0 8 chr11 78882833 78882957 -69900515 + FLAM_C SINE Alu 2 124 -9 26 0 0 0 chr11 78882957 78882983 -69900489 + AT_rich Low_complexity Low_complexity 1 26 0 2092 113 0 10 chr11 78882983 78883285 -69900187 + AluSg SINE Alu 1 299 -11 240 299 31 10 chr11 78883795 78883892 -69899580 + L2 LINE L2 3180 3278 -35 319 306 31 11 chr11 78883916 78884091 -69899381 - MIR SINE MIR -32 230 52 310 149 0 0 chr11 78884092 78884139 -69899333 - MER45 DNA AcHobo -1 1580 1534 618 189 42 78 chr11 78884215 78884345 -69899127 - MER5A DNA MER1_type 0 189 67 1606 108 33 117 chr11 78884345 78884605 -69898867 - AluJo SINE Alu -3 309 81 2226 96 0 0 chr11 78884605 78884898 -69898574 + AluSx SINE Alu 1 293 -19 1606 108 33 117 chr11 78884898 78884970 -69898502 - AluJo SINE Alu -231 81 5 618 189 42 78 chr11 78884970 78885030 -69898442 - MER5A DNA MER1_type -122 67 6 386 338 71 0 chr11 78885157 78885311 -69898161 - MIR SINE MIR -50 212 48 336 194 129 6 chr11 78885634 78885748 -69897724 + L2 LINE L2 2924 3051 -221 288 261 0 0 chr11 78885813 78885882 -69897590 - L2 LINE L2 -3 3269 3201 445 258 172 0 chr11 78887821 78887972 -69895500 + MIR SINE MIR 76 252 -10 330 294 48 56 chr11 78887981 78888107 -69895365 - L2 LINE L2 -8 3305 3181 243 350 23 56 chr11 78888155 78888369 -69895103 - L2 LINE L2 -69 3203 2997 2063 120 0 0 chr11 78888439 78888730 -69894742 + AluSx SINE Alu 19 309 -3 456 262 26 52 chr11 78888807 78888998 -69894474 - L2 LINE L2 -506 2808 2623 * 795 207 114 31 chr11 78888988 78889215 -69894257 + MIR SINE MIR 17 262 0 218 303 121 30 chr11 78889216 78889315 -69894157 - L2 LINE L2 -702 2612 2505 744 156 7 38 chr11 78889326 78889509 -69893963 + MLT1F1 LTR MaLR 394 595 0 2243 98 0 3 chr11 78889534 78889840 -69893632 + AluSq SINE Alu 1 305 -8 238 298 77 0 chr11 78890011 78890115 -69893357 + L1ME4a LINE L1 5688 5799 -2009 260 313 85 11 chr11 78890154 78890330 -69893142 + L1ME4a LINE L1 5863 6051 -70 344 192 162 30 chr11 78890466 78890565 -69892907 + L2 LINE L2 3202 3313 0 195 287 96 21 chr11 78890630 78890724 -69892748 + L2 LINE L2 3171 3271 -1 2275 126 0 3 chr11 78891510 78891820 -69891652 - AluSx SINE Alu -3 309 1 204 323 16 0 chr11 78892157 78892219 -69891253 - MIR3 SINE MIR -32 176 114 229 308 87 0 chr11 78892423 78892527 -69890945 + L2 LINE L2 3159 3271 -1 537 183 144 121 chr11 78892546 78892831 -69890641 - MIR SINE MIR 0 262 2 1732 154 75 7 chr11 78892922 78893202 -69890270 - AluJb SINE Alu -11 301 3 2442 64 40 0 chr11 78893231 78893527 -69889945 + AluY SINE Alu 2 309 -2 683 157 26 0 chr11 78893537 78893652 -69889820 - FLAM_C SINE Alu -14 129 12 540 143 0 0 chr11 78893684 78893761 -69889711 + AluJo SINE Alu 5 81 -231 2270 102 26 0 chr11 78893778 78894081 -69889391 - AluSq SINE Alu 0 313 3 388 139 0 42 chr11 78894082 78894154 -69889318 + AluJo SINE Alu 66 134 -168 2325 167 0 23 chr11 78894166 78894602 -69888870 - L1MB5 LINE L1 -46 6128 5703 186 286 14 14 chr11 78894611 78894681 -69888791 - MIR SINE MIR -79 183 114 198 0 0 0 chr11 78895285 78895307 -69888165 + (T)n Simple_repeat Simple_repeat 1 22 0 1352 120 29 5 chr11 78895562 78895771 -69887701 + L1PA10 LINE L1 5909 6122 -46 423 370 22 0 chr11 78895941 78896125 -69887347 + L3 LINE CR1 900 1087 -490 1751 168 27 94 chr11 78896170 78896576 -69886896 + MSTD LTR MaLR 16 394 -2 526 360 111 6 chr11 78896620 78896981 -69886491 + L3 LINE CR1 1174 1572 -5 343 314 73 78 chr11 78897798 78898222 -69885250 - L2 LINE L2 -41 3231 2810 917 142 0 0 chr11 78899231 78899351 -69884121 + FLAM_C SINE Alu 1 120 -23 228 35 0 0 chr11 78899351 78899380 -69884092 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 230 266 43 21 chr11 78899403 78899497 -69883975 - LTR67 LTR ERVL -22 535 440 2571 80 8 3 chr11 78900034 78900397 -69883075 - L1PA13 LINE L1 0 6163 5799 522 275 15 0 chr11 78900404 78900535 -69882937 - MIR SINE MIR -77 185 53 405 224 105 40 chr11 78900634 78900786 -69882686 + L1ME4a LINE L1 5960 6121 0 1001 140 7 7 chr11 78900798 78900981 -69882491 - FRAM SINE Alu 0 180 1 1747 168 0 75 chr11 78900988 78901183 -69882289 - AluJb SINE Alu -3 309 148 2117 125 0 3 chr11 78901183 78901472 -69882000 - AluSx SINE Alu -24 288 1 1747 168 0 75 chr11 78901472 78901610 -69881862 - AluJb SINE Alu -164 148 1 308 189 198 0 chr11 78901659 78901765 -69881707 + L1ME4a LINE L1 5956 6082 -39 23 54 0 0 chr11 78901770 78901807 -69881665 + AT_rich Low_complexity Low_complexity 1 37 0 1944 185 0 3 chr11 78901815 78902128 -69881344 + AluSx SINE Alu 1 312 0 209 259 12 47 chr11 78902791 78902876 -69880596 + CT-rich Low_complexity Low_complexity 3 84 0 196 313 0 0 chr11 78903339 78903403 -69880069 - L3 LINE CR1 -109 1468 1405 262 249 97 74 chr11 78903408 78903625 -69879847 - L2 LINE L2 -22 3250 3029 1111 293 144 19 chr11 78903664 78904288 -69879184 + L2 LINE L2 2195 2896 -418 2073 121 25 0 chr11 78904606 78904888 -69878584 - AluSx SINE Alu -19 293 5 360 282 86 26 chr11 78905406 78905526 -69877946 + MIR SINE MIR 25 166 -96 783 171 33 0 chr11 78905526 78905678 -69877794 + L1PB4 LINE L1 6000 6156 0 360 282 86 26 chr11 78905678 78905766 -69877706 + MIR SINE MIR 166 247 -15 567 311 95 63 chr11 78905793 78906152 -69877320 - L3 LINE CR1 -733 844 467 2310 99 0 0 chr11 78906152 78906445 -69877027 + AluSx SINE Alu 1 293 -19 567 311 95 63 chr11 78906445 78906516 -69876956 - L3 LINE CR1 -1110 467 400 1543 157 0 39 chr11 78906528 78906833 -69876639 - L1MB5 LINE L1 -179 5995 5703 186 286 14 14 chr11 78906842 78906912 -69876560 - MIR SINE MIR -79 183 114 1961 134 0 33 chr11 78907516 78907822 -69875650 - AluJb SINE Alu -7 305 10 1898 161 0 26 chr11 78908138 78908442 -69875030 + AluJo SINE Alu 1 296 -16 231 314 178 0 chr11 78908598 78908716 -69874756 + MIR SINE MIR 53 191 -71 208 121 0 0 chr11 78908785 78908818 -69874654 + (CACCC)n Simple_repeat Simple_repeat 3 35 0 197 245 0 20 chr11 78909090 78909139 -69874333 - MIR3 SINE MIR -4 204 157 248 280 127 34 chr11 78909199 78909317 -69874155 - MIR SINE MIR -103 159 31 978 85 0 102 chr11 78909440 78909457 -69874015 + MER4E LTR ERV1 1 18 -761 2134 82 53 7 chr11 78909457 78909738 -69873734 - AluSx SINE Alu -18 294 1 978 85 0 102 chr11 78909738 78909821 -69873651 + MER4E LTR ERV1 18 78 -701 2459 95 125 5 chr11 78909821 78910221 -69873251 + LTR7 LTR ERV1 1 448 -2 978 85 0 102 chr11 78910221 78910295 -69873177 + MER4E LTR ERV1 78 158 -621 1855 127 55 18 chr11 78910295 78910675 -69872797 + LTR7 LTR ERV1 1 450 0 3600 108 40 55 chr11 78910675 78911042 -69872430 + MER4E LTR ERV1 154 510 -269 2461 72 0 0 chr11 78911042 78911333 -69872139 + AluSg SINE Alu 1 291 -19 3600 108 40 55 chr11 78911333 78911588 -69871884 + MER4E LTR ERV1 510 767 -12 277 167 52 83 chr11 78911836 78911932 -69871540 - L2 LINE L2 -44 3228 3136 799 250 33 28 chr11 78911980 78912192 -69871280 - MIR SINE MIR -4 258 46 2014 101 97 0 chr11 78912477 78912755 -69870717 + AluSg SINE Alu 1 305 -5 191 175 25 0 chr11 78912859 78912899 -69870573 + L2 LINE L2 3201 3241 -31 223 318 129 8 chr11 78912975 78913107 -69870365 - MIR SINE MIR -7 255 108 547 200 115 0 chr11 78913402 78913532 -69869940 - MER69 DNA AcHobo -1079 147 3 1949 153 0 20 chr11 78913731 78914032 -69869440 + AluJo SINE Alu 1 295 -17 185 298 50 85 chr11 78914213 78914354 -69869118 - MIR SINE MIR -10 252 117 308 172 0 78 chr11 78914981 78915045 -69868427 + MER81 DNA DNA 1 59 -55 226 300 100 11 chr11 78915087 78915177 -69868295 - L2 LINE L2 -33 3239 3142 323 294 137 7 chr11 78915208 78915361 -69868111 - MIR SINE MIR -38 224 52 623 143 0 4 chr11 78915597 78915822 -69867650 + AluJo SINE Alu 1 310 -2 205 257 19 67 chr11 78915880 78915985 -69867487 + L2 LINE L2 2998 3097 -175 * 247 265 90 108 chr11 78915968 78916191 -69867281 - L2 LINE L2 -38 3234 3016 678 139 31 16 chr11 78916229 78916358 -69867114 - FLAM_C SINE Alu 0 133 3 283 336 89 30 chr11 78916369 78916802 -69866670 - L2 LINE L2 -248 3024 2554 188 218 109 18 chr11 78917882 78917937 -69865535 + L2 LINE L2 3208 3267 -5 242 269 86 21 chr11 78918144 78918237 -69865235 + L2 LINE L2 3141 3239 -33 2153 143 0 0 chr11 78919566 78919866 -69863606 - AluSx SINE Alu -12 300 1 347 290 103 18 chr11 78919901 78920082 -69863390 - MIR SINE MIR -63 145 2 227 287 22 96 chr11 78920415 78920551 -69862921 - MIR3 SINE MIR -23 185 60 299 288 135 6 chr11 78921255 78921418 -69862054 - L3 LINE CR1 -158 1419 1236 206 217 67 0 chr11 78921485 78921545 -69861927 - L2 LINE L2 -12 3301 3238 206 341 24 8 chr11 78921762 78921885 -69861587 - L2 LINE L2 -10 3262 3138 550 237 149 21 chr11 78921937 78922131 -69861341 - MIR SINE MIR -37 225 7 207 306 148 0 chr11 78922131 78922239 -69861233 - L2 LINE L2 -135 3137 3014 2380 57 0 34 chr11 78922241 78922537 -69860935 - AluY SINE Alu -17 294 9 266 208 52 39 chr11 78922800 78922877 -69860595 - MIR SINE MIR -121 141 64 324 286 82 14 chr11 78924557 78924704 -69858768 + L2 LINE L2 2927 3083 -189 360 292 125 3 chr11 78926059 78926263 -69857209 + MIR SINE MIR 16 245 -17 319 296 158 63 chr11 78926624 78926959 -69856513 + L2 LINE L2 2906 3272 0 1932 154 31 0 chr11 78927025 78927317 -69856155 - AluJo SINE Alu -11 301 1 288 235 34 76 chr11 78927728 78927847 -69855625 - MIR SINE MIR -89 173 60 244 371 30 0 chr11 78928363 78928495 -69854977 + MIR SINE MIR 49 184 -78 192 158 53 0 chr11 78928535 78928573 -69854899 + MIR SINE MIR 111 150 -112 183 302 177 0 chr11 78928675 78928771 -69854701 + L2 LINE L2 3139 3251 -21 2517 66 3 3 chr11 78930041 78930345 -69853127 - AluY SINE Alu -7 304 1 253 262 9 9 chr11 78930368 78930475 -69852997 - HAL1 LINE L1 -1409 1098 992 322 271 45 32 chr11 78930569 78930724 -69852748 + HAL1b LINE L1 747 903 -445 931 117 7 28 chr11 78930725 78930870 -69852602 + FLAM_C SINE Alu 1 142 -1 352 292 58 91 chr11 78930993 78931157 -69852315 + HAL1 LINE L1 2241 2394 -113 2253 104 0 20 chr11 78931157 78931455 -69852017 + AluY SINE Alu 1 292 -19 352 292 58 91 chr11 78931455 78931564 -69851908 + HAL1 LINE L1 2394 2505 -2 316 261 43 0 chr11 78931994 78932086 -69851386 - MER81 DNA DNA -17 97 2 2019 121 11 3 chr11 78932376 78932684 -69850788 + AluSx SINE Alu 1 310 0 248 160 40 0 chr11 78932754 78932804 -69850668 - L2 LINE L2 0 3313 3262 239 330 34 0 chr11 78932838 78932926 -69850546 - L2 LINE L2 -46 3226 3136 497 219 48 43 chr11 78932926 78933005 -69850467 - L1M4 LINE L1 -1293 4853 4776 456 19 0 0 chr11 78933005 78933058 -69850414 + (TG)n Simple_repeat Simple_repeat 2 54 0 1966 154 0 0 chr11 78933058 78933330 -69850142 - AluSx SINE Alu -40 272 1 497 219 48 43 chr11 78933330 78933632 -69849840 - L1M4 LINE L1 -1369 4777 4421 2151 119 10 10 chr11 78933632 78933942 -69849530 - AluSx SINE Alu 0 312 3 352 175 0 0 chr11 78933943 78934000 -69849472 + FLAM SINE Alu 66 122 -11 2277 169 9 24 chr11 78934001 78934463 -69849009 - L1MB5 LINE L1 -17 6157 5703 186 286 14 14 chr11 78934472 78934542 -69848930 - MIR SINE MIR -79 183 114 180 0 0 0 chr11 78935146 78935166 -69848306 + (T)n Simple_repeat Simple_repeat 1 20 0 180 0 0 0 chr11 78935321 78935341 -69848131 + (A)n Simple_repeat Simple_repeat 1 20 0 556 299 100 48 chr11 78935413 78935504 -69847968 - L1MC4a LINE L1 -1802 6006 5921 2212 119 0 26 chr11 78935504 78935816 -69847656 + AluSx SINE Alu 3 306 -6 556 299 100 48 chr11 78935816 78935844 -69847628 - L1MC4a LINE L1 -1887 5921 5896 1802 153 57 23 chr11 78935844 78936144 -69847328 - AluJb SINE Alu 0 312 3 556 299 100 48 chr11 78936144 78936444 -69847028 - L1MC4a LINE L1 -1912 5896 5564 191 239 0 22 chr11 78936530 78936576 -69846896 - MIR SINE MIR 0 262 218 227 296 91 0 chr11 78936609 78936697 -69846775 - MIR SINE MIR -139 123 28 303 281 108 36 chr11 78937227 78937325 -69846147 + MIR SINE MIR 111 223 -39 2358 86 0 35 chr11 78937325 78937640 -69845832 + AluY SINE Alu 1 304 -7 303 281 108 36 chr11 78937640 78937680 -69845792 + MIR SINE MIR 223 259 -3 553 218 0 24 chr11 78938013 78938137 -69845335 - MIR SINE MIR -65 197 77 2274 122 0 6 chr11 78938180 78938492 -69844980 - AluSx SINE Alu 0 312 3 1000 155 0 12 chr11 78938721 78938882 -69844590 - FRAM SINE Alu 0 176 18 324 260 104 0 chr11 78938882 78938959 -69844513 + L1MC4 LINE L1 6615 6699 -1343 233 273 34 0 chr11 78938961 78939049 -69844423 - L1MC4 LINE L1 -1339 6703 6613 236 121 0 0 chr11 78939060 78939093 -69844379 - Alu SINE Alu -14 119 87 890 192 5 73 chr11 78939097 78939316 -69844156 - AluJo SINE Alu -108 204 1 1090 165 28 76 chr11 78939534 78939749 -69843723 + MER33 DNA MER1_type 23 247 -2338 2323 78 7 0 chr11 78939749 78940042 -69843430 - AluSq SINE Alu -18 295 1 2281 114 3 0 chr11 78940051 78940358 -69843114 - AluSx SINE Alu -4 308 1 1090 165 28 76 chr11 78940358 78940423 -69843049 + MER33 DNA MER1_type 255 299 -25 309 264 50 57 chr11 78940989 78941129 -69842343 + MIR SINE MIR 121 259 -3 21 0 0 0 chr11 78941142 78941163 -69842309 + AT_rich Low_complexity Low_complexity 1 21 0 2167 110 11 0 chr11 78941172 78941474 -69841998 + AluSx SINE Alu 1 305 0 2426 102 0 0 chr11 78941586 78941889 -69841583 - AluSq SINE Alu -10 303 1 771 179 26 103 chr11 78942088 78942293 -69841179 + Charlie2 DNA MER1_type 2531 2711 -151 2393 84 7 0 chr11 78942293 78942590 -69840882 + AluY SINE Alu 1 299 -12 771 179 26 103 chr11 78942590 78942657 -69840815 + Charlie2 DNA MER1_type 2711 2782 -80 2197 132 0 0 chr11 78942679 78942982 -69840490 - AluSx SINE Alu -9 303 1 316 296 63 21 chr11 78943077 78943219 -69840253 - L1M4 LINE L1 -527 5651 5504 745 284 33 87 chr11 78943220 78943762 -69839710 + MER34 LTR ERV1 1 513 -29 1992 152 0 23 chr11 78943968 78944278 -69839194 - AluJo SINE Alu -9 303 1 2624 27 0 10 chr11 78945501 78945796 -69837676 + AluY SINE Alu 1 292 -19 408 264 125 19 chr11 78945902 78946110 -69837362 - L1MEc LINE L1 -4408 1988 1759 998 122 14 7 chr11 78946119 78946267 -69837205 + AluJo SINE Alu 1 149 -163 364 217 2 15 chr11 78946272 78946363 -69837109 - AluJ/FLAM SINE Alu -226 76 2 574 239 123 83 chr11 78946363 78946596 -69836876 - L1MEc LINE L1 -4699 1697 1440 2402 81 3 3 chr11 78946596 78946891 -69836581 + AluSp SINE Alu 2 296 -17 574 239 123 83 chr11 78946891 78947055 -69836417 - L1MEc LINE L1 -4956 1440 1284 1152 151 0 0 chr11 78947337 78947509 -69835963 - FRAM SINE Alu -9 167 1 231 33 0 0 chr11 78947509 78947518 -69835954 + (A)n Simple_repeat Simple_repeat 1 9 -21 2046 138 7 0 chr11 78947518 78947809 -69835663 - AluSx SINE Alu -18 294 2 231 33 0 0 chr11 78947809 78947829 -69835643 + (A)n Simple_repeat Simple_repeat 8 30 0 2810 101 3 3 chr11 78947961 78948349 -69835123 - LTR3 LTR ERVK -44 388 1 591 137 0 99 chr11 78948349 78948432 -69835040 + L1MD3 LINE L1 7878 7945 -50 1741 115 119 8 chr11 78948432 78948693 -69834779 - AluSg1 SINE Alu -18 291 2 591 137 0 99 chr11 78948693 78948740 -69834732 + L1MD3 LINE L1 7945 7995 0 1894 117 13 52 chr11 78948743 78949051 -69834421 + AluSx SINE Alu 1 296 -16 1853 163 30 3 chr11 78949103 78949398 -69834074 - AluJo SINE Alu -7 305 3 2559 43 13 3 chr11 78949500 78949803 -69833669 + AluY SINE Alu 1 306 -5 1565 116 5 9 chr11 78949924 78950148 -69833324 - AluSg/x SINE Alu -8 304 82 * 2358 98 0 0 chr11 78950147 78950442 -69833030 - AluSx SINE Alu -17 295 1 615 231 153 36 chr11 78950454 78950671 -69832801 + L1MEc LINE L1 2015 2280 -4116 2320 98 3 0 chr11 78950671 78950968 -69832504 + AluSp SINE Alu 1 298 -15 615 231 153 36 chr11 78950968 78951057 -69832415 + L1MEc LINE L1 2280 2357 -4039 2023 98 53 0 chr11 78951057 78951322 -69832150 + AluSx SINE Alu 1 279 -33 40 0 0 0 chr11 78951322 78951362 -69832110 + AT_rich Low_complexity Low_complexity 1 40 0 974 207 158 59 chr11 78951362 78951583 -69831889 + L1M4 LINE L1 4159 4357 -1789 2217 103 3 28 chr11 78951583 78951903 -69831569 + AluSx SINE Alu 1 312 0 974 207 158 59 chr11 78951903 78952205 -69831267 + L1M4 LINE L1 4357 4628 -1518 1988 151 0 0 chr11 78952205 78952477 -69830995 + AluSx SINE Alu 1 272 -40 456 19 0 0 chr11 78952477 78952530 -69830942 + (CA)n Simple_repeat Simple_repeat 2 54 0 974 207 158 59 chr11 78952530 78952609 -69830863 + L1M4 LINE L1 4627 4853 -1293 260 330 34 0 chr11 78952609 78952697 -69830775 + L2 LINE L2 3136 3226 -46 264 160 40 0 chr11 78952731 78952781 -69830691 + L2 LINE L2 3262 3313 0 2008 121 11 3 chr11 78952851 78953159 -69830313 - AluSx SINE Alu 0 310 1 327 245 32 11 chr11 78953449 78953543 -69829929 + MER81 DNA DNA 2 97 -17 21 0 0 0 chr11 78953966 78953987 -69829485 + AT_rich Low_complexity Low_complexity 1 21 0 342 299 19 79 chr11 78954052 78954082 -69829390 - HAL1 LINE L1 -78 2429 2399 2296 97 0 20 chr11 78954082 78954380 -69829092 - AluY SINE Alu -19 292 1 342 299 19 79 chr11 78954380 78954563 -69828909 - HAL1 LINE L1 -108 2399 2229 927 117 7 28 chr11 78954667 78954812 -69828660 - FLAM_C SINE Alu -1 142 1 315 271 45 32 chr11 78954813 78954968 -69828504 - HAL1b LINE L1 -445 903 747 1562 181 3 19 chr11 78955192 78955507 -69827965 + AluY SINE Alu 1 310 -1 324 212 39 51 chr11 78955630 78955884 -69827588 + L1MC5 LINE L1 7498 7929 -32 2376 90 3 0 chr11 78956166 78956466 -69827006 + AluSp SINE Alu 2 302 -11 656 202 40 12 chr11 78956602 78956775 -69826697 - LTR16A1 LTR ERVL 0 457 280 240 261 62 0 chr11 78956804 78956869 -69826603 - LTR16A1 LTR ERVL -381 76 8 694 228 96 0 chr11 78956883 78957050 -69826422 - MER5A DNA MER1_type -4 185 3 1892 155 16 7 chr11 78957127 78957436 -69826036 + AluJb SINE Alu 1 312 0 280 265 277 43 chr11 78957439 78957767 -69825705 - HAL1 LINE L1 -823 1684 1280 2513 69 20 0 chr11 78957769 78958073 -69825399 - AluY SINE Alu -1 310 1 351 248 74 58 chr11 78958694 78958815 -69824657 - MIR SINE MIR -127 135 13 257 254 90 0 chr11 78959160 78959227 -69824245 - L2 LINE L2 -37 3235 3163 2228 122 6 3 chr11 78959454 78959765 -69823707 + AluSq SINE Alu 1 312 -1 866 149 8 0 chr11 78959823 78959957 -69823515 - FLAM_C SINE Alu -3 140 6 2106 129 7 0 chr11 78959971 78960265 -69823207 - AluSx SINE Alu -16 296 1 496 223 12 90 chr11 78960505 78960525 -69822947 - L2 LINE L2 0 3313 3293 2300 116 0 0 chr11 78960525 78960836 -69822636 - AluSq SINE Alu -1 312 2 496 223 12 90 chr11 78960836 78960981 -69822491 - L2 LINE L2 -20 3293 3161 665 248 14 0 chr11 78960982 78961127 -69822345 + L1MC/D LINE L1 5594 5740 -2068 699 257 109 25 chr11 78961187 78961471 -69822001 - L2 LINE L2 -155 3158 2851 1857 151 27 10 chr11 78961664 78961963 -69821509 - AluJb SINE Alu -4 308 5 186 222 52 96 chr11 78962075 78962210 -69821262 + L2 LINE L2 2246 2374 -940 367 227 11 45 chr11 78962313 78962401 -69821071 + L2 LINE L2 3211 3295 -18 2353 94 7 10 chr11 78962410 78962719 -69820753 + AluSp SINE Alu 1 308 -5 417 173 47 71 chr11 78963244 78963371 -69820101 - MER53 DNA DNA -1 188 65 361 83 0 0 chr11 78963372 78963420 -69820052 + LTR54 LTR ERV1 402 449 -61 311 158 24 73 chr11 78963419 78963501 -69819971 - MER53 DNA DNA -111 78 1 * 871 158 12 29 chr11 78963504 78963675 -69819797 + MER20 DNA MER1_type 31 198 -21 1110 107 0 31 chr11 78963777 78963936 -69819536 + AluSx SINE Alu 1 154 -158 2400 96 3 0 chr11 78964133 78964436 -69819036 + AluSg SINE Alu 1 304 -6 324 250 243 26 chr11 78964437 78964589 -69818883 - L1ME LINE L1 -604 5562 5378 2255 115 3 6 chr11 78964593 78964907 -69818565 - AluSq SINE Alu 0 313 1 5072 64 42 9 chr11 78964911 78965550 -69817922 - SVA Other Other 0 1386 727 27 29 0 0 chr11 78965550 78965584 -69817888 + AT_rich Low_complexity Low_complexity 1 34 0 2002 146 3 31 chr11 78965627 78965948 -69817524 + AluJo SINE Alu 1 312 0 2218 115 0 26 chr11 78966093 78966405 -69817067 + AluSx SINE Alu 3 306 -6 574 288 101 32 chr11 78966419 78966434 -69817038 - L1MC4a LINE L1 -1907 5901 5888 1795 153 57 23 chr11 78966434 78966734 -69816738 - AluJb SINE Alu 0 312 3 574 288 101 32 chr11 78966734 78967034 -69816438 - L1MC4a LINE L1 -1920 5888 5564 201 239 0 22 chr11 78967120 78967166 -69816306 - MIR SINE MIR 0 262 218 249 296 91 0 chr11 78967199 78967287 -69816185 - MIR SINE MIR -139 123 28 328 295 115 29 chr11 78967817 78967915 -69815557 + MIR SINE MIR 109 224 -38 2336 89 0 35 chr11 78967915 78968230 -69815242 + AluY SINE Alu 1 304 -7 328 295 115 29 chr11 78968230 78968270 -69815202 + MIR SINE MIR 224 259 -3 583 218 0 24 chr11 78968603 78968727 -69814745 - MIR SINE MIR -65 197 77 2264 122 0 6 chr11 78968770 78969082 -69814390 - AluSx SINE Alu 0 312 3 1002 155 0 12 chr11 78969311 78969472 -69814000 - FRAM SINE Alu 0 176 18 338 241 76 0 chr11 78969472 78969551 -69813921 + L1MC4 LINE L1 6615 6699 -1343 236 273 34 0 chr11 78969553 78969641 -69813831 - L1MC4 LINE L1 -1339 6703 6613 233 121 0 0 chr11 78969652 78969685 -69813787 - Alu SINE Alu -13 120 88 904 187 5 73 chr11 78969689 78969908 -69813564 - AluJo SINE Alu -108 204 1 1087 165 28 76 chr11 78970126 78970341 -69813131 + MER33 DNA MER1_type 23 247 -2338 2337 75 7 0 chr11 78970341 78970634 -69812838 - AluSq SINE Alu -18 295 1 2265 114 3 0 chr11 78970643 78970950 -69812522 - AluSx SINE Alu -4 308 1 1087 165 28 76 chr11 78970950 78971015 -69812457 + MER33 DNA MER1_type 255 299 -25 332 264 50 57 chr11 78971581 78971721 -69811751 + MIR SINE MIR 121 259 -3 21 0 0 0 chr11 78971734 78971755 -69811717 + AT_rich Low_complexity Low_complexity 1 21 0 2037 125 11 0 chr11 78971764 78972066 -69811406 + AluSx SINE Alu 1 305 0 2442 95 0 3 chr11 78972178 78972482 -69810990 - AluSx SINE Alu -9 303 1 692 190 39 49 chr11 78972681 78972886 -69810586 + Charlie2 DNA MER1_type 2531 2733 -129 2346 93 7 0 chr11 78972886 78973188 -69810284 + AluY SINE Alu 1 304 -7 445 267 166 41 chr11 78973228 78973757 -69809715 - L2 LINE L2 -154 3159 2524 1693 119 116 11 chr11 78973757 78974025 -69809447 - AluSg SINE Alu -14 296 1 445 267 166 41 chr11 78974025 78974115 -69809357 - L2 LINE L2 -789 2524 2447 1801 141 32 45 chr11 78974386 78974773 -69808699 + AluJo SINE Alu 3 385 0 207 371 39 9 chr11 78974773 78974882 -69808590 - MIR SINE MIR -68 140 41 2169 109 28 0 chr11 78974980 78975264 -69808208 + AluSx SINE Alu 1 292 -20 181 239 14 70 chr11 78975348 78975419 -69808053 + L2 LINE L2 2435 2501 -813 551 307 63 21 chr11 78975444 78975682 -69807790 - L2 LINE L2 -472 2842 2595 2449 74 0 19 chr11 78975959 78976270 -69807202 - AluY SINE Alu -5 306 2 242 209 35 58 chr11 78976271 78976357 -69807115 - LTR67 LTR ERVL -8 549 466 * 629 250 106 97 chr11 78976354 78976714 -69806758 - LTR67 LTR ERVL -193 364 2 311 190 101 0 chr11 78976852 78976931 -69806541 + L1ME LINE L1 6 92 -5978 970 108 8 0 chr11 78976940 78977070 -69806402 + FLAM_C SINE Alu 1 131 -2 33 0 0 0 chr11 78977190 78977223 -69806249 + GC_rich Low_complexity Low_complexity 1 33 0 198 0 0 0 chr11 78977244 78977266 -69806206 + (A)n Simple_repeat Simple_repeat 1 22 0 704 281 46 29 chr11 78977268 78977506 -69805966 - MIR SINE MIR 0 262 21 2170 108 27 10 chr11 78977709 78978005 -69805467 - AluSx SINE Alu -1 311 11 637 246 56 78 chr11 78978400 78978632 -69804840 - MIR SINE MIR 0 262 36 636 175 8 33 chr11 78978735 78978878 -69804594 + FLAM_A SINE Alu 1 140 0 1315 58 12 12 chr11 78978916 78979087 -69804385 - BC200 scRNA scRNA -28 172 2 1866 80 55 116 chr11 78979465 78979828 -69803644 + Tigger1 DNA MER2_type 2078 2418 0 1122 184 92 0 chr11 78979828 78980087 -69803385 - MER33 DNA MER1_type -39 285 2 2491 78 3 0 chr11 78980116 78980422 -69803050 - AluSx SINE Alu -5 307 1 1904 128 48 3 chr11 78980658 78980948 -69802524 - AluJb SINE Alu -9 303 1 485 292 106 47 chr11 78981058 78981510 -69801962 - L1MC4a LINE L1 -164 5957 5479 2163 131 7 3 chr11 78981955 78982261 -69801211 - AluSx SINE Alu -5 307 1 307 344 107 19 chr11 78982963 78983233 -69800239 - L2 LINE L2 0 3272 2979 2249 103 10 0 chr11 78983889 78984180 -69799292 + AluSx SINE Alu 2 295 -17 425 270 166 43 chr11 78984230 78984760 -69798712 - L2 LINE L2 -154 3159 2525 1684 120 116 11 chr11 78984760 78985027 -69798445 - AluSg SINE Alu -15 295 1 425 270 166 43 chr11 78985027 78985117 -69798355 - L2 LINE L2 -788 2525 2447 1794 145 39 42 chr11 78985388 78985698 -69797774 + AluJo SINE Alu 3 311 -1 253 159 14 29 chr11 78985703 78985772 -69797700 + GA-rich Low_complexity Low_complexity 2 69 0 2124 109 28 3 chr11 78985982 78986265 -69797207 + AluSx SINE Alu 3 292 -20 181 239 14 70 chr11 78986349 78986420 -69797052 + L2 LINE L2 2435 2501 -813 551 307 63 21 chr11 78986445 78986683 -69796789 - L2 LINE L2 -472 2842 2595 2464 71 0 19 chr11 78986960 78987271 -69796201 - AluY SINE Alu -5 306 2 242 209 35 58 chr11 78987272 78987358 -69796114 - LTR67 LTR ERVL -8 549 466 * 629 250 106 97 chr11 78987355 78987715 -69795757 - LTR67 LTR ERVL -193 364 2 311 190 101 0 chr11 78987853 78987932 -69795540 + L1ME LINE L1 6 92 -5978 979 107 8 0 chr11 78987941 78988072 -69795400 + FLAM_C SINE Alu 1 132 -1 180 0 0 0 chr11 78988072 78988092 -69795380 + (T)n Simple_repeat Simple_repeat 1 20 0 207 0 0 0 chr11 78988213 78988236 -69795236 + (A)n Simple_repeat Simple_repeat 1 23 0 1756 169 202 62 chr11 78988245 78988491 -69794981 + L1MD3 LINE L1 6829 7039 -956 403 200 33 33 chr11 78988491 78988581 -69794891 + MLT1F1 LTR MaLR 36 125 -442 1756 169 202 62 chr11 78988581 78988998 -69794474 + L1MD3 LINE L1 7039 7883 -112 463 139 0 102 chr11 78988998 78989059 -69794413 - LTR3 LTR ERVK 0 432 385 2547 78 0 0 chr11 78989059 78989368 -69794104 + AluY SINE Alu 1 309 -2 463 139 0 102 chr11 78989368 78989414 -69794058 - LTR3 LTR ERVK -47 385 336 206 328 0 22 chr11 78989615 78989651 -69793821 + (TG)n Simple_repeat Simple_repeat 1 36 -95 194 0 39 0 chr11 78989651 78989677 -69793795 + (TGG)n Simple_repeat Simple_repeat 3 29 0 206 328 0 22 chr11 78989677 78989774 -69793698 + (TG)n Simple_repeat Simple_repeat 36 131 0 236 299 109 49 chr11 78990196 78990380 -69793092 + MIR SINE MIR 60 254 -8 2166 129 7 0 chr11 78991029 78991331 -69792141 - AluSx SINE Alu -8 304 1 351 231 82 45 chr11 78991331 78991400 -69792072 + MIR SINE MIR 92 157 -105 2226 183 69 21 chr11 78991400 78991881 -69791591 - MLT1D LTR MaLR -1 504 1 351 231 82 45 chr11 78991881 78991945 -69791527 + MIR SINE MIR 157 230 -32 191 229 21 42 chr11 78992701 78992749 -69790723 - L2 LINE L2 -89 3183 3137 295 318 54 16 chr11 78992779 78992908 -69790564 - L2 LINE L2 -7 3265 3132 415 270 128 14 chr11 78993268 78993416 -69790056 + MIR SINE MIR 40 204 -58 254 283 254 12 chr11 78994120 78994326 -69789146 - MIR SINE MIR -2 260 14 218 347 112 41 chr11 78994351 78994521 -69788951 - L2 LINE L2 -86 3186 3005 234 307 96 42 chr11 78995057 78995223 -69788249 + MIR SINE MIR 33 207 -55 206 227 171 34 chr11 78995855 78995943 -69787529 - MIR3 SINE MIR -42 166 67 305 286 0 13 chr11 78995969 78996046 -69787426 + MIR SINE MIR 1 76 -186 1782 48 33 0 chr11 78996064 78996274 -69787198 + AluY SINE Alu 1 217 -94 318 296 139 35 chr11 78996818 78996990 -69786482 - MIR SINE MIR -20 242 53 405 256 102 0 chr11 78997054 78997191 -69786281 - L1ME4a LINE L1 -1 6120 5970 1564 117 42 21 chr11 78997614 78997727 -69785745 - AluSx SINE Alu -67 245 136 1609 186 3 10 chr11 78997727 78998028 -69785444 - AluSg1 SINE Alu -10 299 1 1564 117 42 21 chr11 78998028 78998154 -69785318 - AluSx SINE Alu -176 136 1 250 267 152 38 chr11 78998247 78998352 -69785120 - MIR3 SINE MIR -47 161 45 2505 56 13 10 chr11 78998917 78999223 -69784249 - AluY SINE Alu -4 307 1 375 241 132 68 chr11 78999330 78999550 -69783922 + LTR67 LTR ERVL 20 253 -304 323 250 48 10 chr11 78999633 78999737 -69783735 + LTR67 LTR ERVL 428 535 -22 2292 66 7 52 chr11 78999996 79000301 -69783171 + AluY SINE Alu 1 291 -20 180 176 0 0 chr11 79000301 79000335 -69783137 + (TA)n Simple_repeat Simple_repeat 1 34 0 2002 147 16 3 chr11 79000480 79000787 -69782685 + AluSx SINE Alu 1 311 -1 452 115 195 0 chr11 79001240 79001327 -69782145 - MLT1B LTR MaLR -286 104 1 2423 64 0 3 chr11 79001863 79002181 -69781291 + AluY SINE Alu 1 317 0 955 141 0 0 chr11 79002242 79002377 -69781095 + AluSq/x SINE Alu 2 136 -176 2441 75 7 0 chr11 79002377 79002672 -69780800 + AluY SINE Alu 1 297 -14 4460 76 40 10 chr11 79002674 79003294 -69780178 + SVA Other Other 154 792 -594 276 134 113 72 chr11 79003840 79003937 -69779535 - MIR SINE MIR -120 142 42 666 262 42 11 chr11 79004277 79004503 -69778969 - MIR SINE MIR -15 247 17 1508 219 15 30 chr11 79005044 79005377 -69778095 - MLT1A1 LTR MaLR -6 359 32 358 259 80 69 chr11 79006728 79006929 -69776543 - MIR SINE MIR -59 149 1 573 134 198 47 chr11 79007344 79007478 -69775994 + Looper DNA T2_type 6 173 -1385 1930 156 0 0 chr11 79007478 79007767 -69775705 + AluSx SINE Alu 23 311 -1 573 134 198 47 chr11 79007767 79007804 -69775668 + Looper DNA T2_type 173 203 -1355 2459 106 0 0 chr11 79007806 79008118 -69775354 - AluSx SINE Alu 0 312 1 606 154 0 18 chr11 79008119 79008229 -69775243 + Looper DNA T2_type 775 882 -676 269 180 20 0 chr11 79008221 79008271 -69775201 + Looper DNA T2_type 1508 1558 0 * 24 0 0 0 chr11 79008871 79008895 -69774577 + AT_rich Low_complexity Low_complexity 1 24 0 1238 172 10 24 chr11 79009700 79009780 -69773692 - AluJo SINE Alu -106 206 126 2254 78 7 7 chr11 79009780 79010074 -69773398 - AluY SINE Alu -17 294 1 1238 172 10 24 chr11 79010074 79010202 -69773270 - AluJo SINE Alu -186 126 1 2184 111 10 0 chr11 79010650 79010939 -69772533 + AluSx SINE Alu 19 310 -2 279 261 0 43 chr11 79011151 79011220 -69772252 - MIR SINE MIR 0 262 197 5232 38 0 2 chr11 79011394 79011970 -69771502 + SVA Other Other 811 1385 -1 26 0 0 0 chr11 79011970 79011996 -69771476 + AT_rich Low_complexity Low_complexity 1 26 0 974 174 17 12 chr11 79011996 79012168 -69771304 + AluJb SINE Alu 121 293 -19 1674 91 173 12 chr11 79012320 79012574 -69770898 + AluY SINE Alu 1 295 -16 254 192 135 0 chr11 79012574 79012626 -69770846 - AluJ/FLAM SINE Alu -243 59 1 1299 157 138 26 chr11 79012668 79012936 -69770536 - AluJb SINE Alu -2 300 3 244 209 60 0 chr11 79012957 79013024 -69770448 + L1ME3A LINE L1 6068 6138 -32 2406 60 20 7 chr11 79013392 79013694 -69769778 + AluY SINE Alu 1 306 -5 2205 98 7 3 chr11 79013721 79014016 -69769456 + AluSq SINE Alu 1 296 -17 341 149 96 32 chr11 79014075 79014122 -69769350 + L1MB2 LINE L1 6039 6082 -89 1005 178 77 95 chr11 79014122 79014471 -69769001 + MER2 DNA MER2_type 1 343 -1 341 149 96 32 chr11 79014471 79014517 -69768955 + L1MB2 LINE L1 6082 6138 -33 1402 106 0 0 chr11 79015838 79016018 -69767454 + AluSq SINE Alu 56 235 -78 450 251 91 97 chr11 79017345 79017520 -69765952 + MER5B DNA MER1_type 3 176 -2 195 250 125 37 chr11 79017714 79017850 -69765622 - MIR SINE MIR -35 227 80 * 303 287 46 0 chr11 79017830 79017917 -69765555 - MER5A DNA MER1_type -14 175 85 394 87 101 29 chr11 79018905 79018974 -69764498 - MER30B DNA MER1_type 0 230 157 414 117 0 0 chr11 79019005 79019065 -69764407 - MER30B DNA MER1_type -126 64 5 1239 160 78 0 chr11 79019660 79019891 -69763581 - AluJb SINE Alu -20 292 44 2490 69 0 0 chr11 79019979 79020282 -69763190 + AluY SINE Alu 2 304 -7 190 349 94 0 chr11 79021804 79021910 -69761562 - MIR3 SINE MIR -15 193 78 1833 122 0 0 chr11 79022010 79022283 -69761189 + AluSx SINE Alu 37 309 0 244 155 17 17 chr11 79022472 79022530 -69760942 + CT-rich Low_complexity Low_complexity 2 59 0 2057 129 0 0 chr11 79022538 79022802 -69760670 - AluSx SINE Alu -48 264 1 1684 181 3 26 chr11 79022827 79023137 -69760335 + AluJb SINE Alu 1 303 -9 256 202 57 113 chr11 79023233 79023357 -69760115 - L1MC4 LINE L1 -91 7951 7835 2275 127 0 0 chr11 79023362 79023669 -69759803 - AluSg SINE Alu -3 307 1 239 301 150 18 chr11 79023686 79023912 -69759560 + MER102b DNA MER1_type 84 339 -2 2250 118 3 3 chr11 79024019 79024325 -69759147 + AluSx SINE Alu 5 310 -2 1751 158 34 10 chr11 79024577 79024874 -69758598 + AluJb SINE Alu 5 308 -4 638 258 109 21 chr11 79025067 79025350 -69758122 + L2 LINE L2 2851 3158 -155 679 248 14 0 chr11 79025410 79025555 -69757917 - L1MC/D LINE L1 -2068 5740 5594 458 223 12 90 chr11 79025556 79025701 -69757771 + L2 LINE L2 3161 3293 -20 2309 116 0 0 chr11 79025701 79026012 -69757460 + AluSq SINE Alu 2 312 -1 458 223 12 90 chr11 79026012 79026032 -69757440 + L2 LINE L2 3293 3313 0 2156 117 0 10 chr11 79026272 79026571 -69756901 + AluSx SINE Alu 1 296 -16 739 144 23 0 chr11 79026585 79026717 -69756755 + FLAM_C SINE Alu 6 140 -3 2231 122 6 3 chr11 79026775 79027086 -69756386 - AluSq SINE Alu -1 312 1 236 254 90 0 chr11 79027313 79027380 -69756092 + L2 LINE L2 3163 3235 -37 323 264 66 50 chr11 79027725 79027846 -69755626 + MIR SINE MIR 13 135 -127 2649 59 0 0 chr11 79028467 79028774 -69754698 + AluY SINE Alu 1 307 -4 324 212 39 51 chr11 79028897 79029151 -69754321 + L1MC5 LINE L1 7498 7929 -32 2402 87 3 0 chr11 79029433 79029733 -69753739 + AluSp SINE Alu 2 302 -11 679 202 40 12 chr11 79029869 79030042 -69753430 - LTR16A1 LTR ERVL 0 457 280 251 246 62 0 chr11 79030071 79030136 -69753336 - LTR16A1 LTR ERVL -381 76 8 643 228 96 0 chr11 79030150 79030317 -69753155 - MER5A DNA MER1_type -4 185 3 2170 131 20 3 chr11 79030395 79030701 -69752771 + AluJb SINE Alu 1 311 -1 288 281 207 35 chr11 79030773 79031029 -69752443 - HAL1 LINE L1 -927 1580 1281 2329 106 20 0 chr11 79031029 79031331 -69752141 - AluSg SINE Alu 0 310 3 298 333 89 30 chr11 79031342 79031775 -69751697 - L2 LINE L2 -248 3024 2554 188 218 109 18 chr11 79032855 79032910 -69750562 + L2 LINE L2 3249 3308 -5 232 204 82 92 chr11 79033117 79033215 -69750257 + L2 LINE L2 3141 3237 -35 2179 140 0 0 chr11 79034539 79034839 -69748633 - AluSx SINE Alu -12 300 1 347 290 103 18 chr11 79034874 79035055 -69748417 - MIR SINE MIR -63 145 2 227 287 22 96 chr11 79035388 79035524 -69747948 - MIR3 SINE MIR -23 185 60 299 288 135 6 chr11 79036228 79036391 -69747081 - L3 LINE CR1 -158 1419 1236 206 217 67 0 chr11 79036458 79036518 -69746954 - L2 LINE L2 -12 3301 3238 200 317 49 32 chr11 79036735 79036858 -69746614 - L2 LINE L2 -10 3262 3138 550 237 149 21 chr11 79036910 79037104 -69746368 - MIR SINE MIR -37 225 7 207 306 148 0 chr11 79037104 79037212 -69746260 - L2 LINE L2 -135 3137 3014 2191 60 0 53 chr11 79037214 79037516 -69745956 - AluY SINE Alu -17 294 9 266 208 52 39 chr11 79037779 79037856 -69745616 - MIR SINE MIR -121 141 64 331 279 82 14 chr11 79039536 79039683 -69743789 + L2 LINE L2 2927 3083 -189 360 292 125 3 chr11 79041038 79041242 -69742230 + MIR SINE MIR 16 245 -17 319 296 158 63 chr11 79041603 79041938 -69741534 + L2 LINE L2 2906 3272 0 2028 147 27 0 chr11 79042004 79042297 -69741175 - AluJo SINE Alu -11 301 1 288 235 34 76 chr11 79042708 79042827 -69740645 - MIR SINE MIR -89 173 60 244 371 30 0 chr11 79043343 79043475 -69739997 + MIR SINE MIR 49 184 -78 192 158 53 0 chr11 79043515 79043553 -69739919 + MIR SINE MIR 111 150 -112 183 302 177 0 chr11 79043655 79043751 -69739721 + L2 LINE L2 3139 3251 -21 2410 97 10 0 chr11 79044689 79044989 -69738483 - AluSx SINE Alu -8 304 2 251 370 139 24 chr11 79045122 79045668 -69737804 + L2 LINE L2 1055 1663 -1651 * 298 344 107 19 chr11 79045645 79045915 -69737557 + L2 LINE L2 2979 3272 0 2026 148 7 3 chr11 79046617 79046927 -69736545 + AluSx SINE Alu 1 311 -1 481 342 98 14 chr11 79047399 79047817 -69735655 + L1MC4a LINE L1 5506 5958 -1850 1803 131 48 3 chr11 79047934 79048224 -69735248 + AluSx SINE Alu 1 303 -9 2306 84 3 0 chr11 79048460 79048759 -69734713 + AluSx SINE Alu 1 300 -12 2108 128 0 0 chr11 79048854 79049152 -69734320 - AluSx SINE Alu -14 298 1 238 317 56 14 chr11 79049247 79049389 -69734083 - L1M4 LINE L1 -527 5651 5504 744 288 33 87 chr11 79049390 79049932 -69733540 + MER34 LTR ERV1 1 513 -29 1927 149 0 23 chr11 79050138 79050447 -69733025 - AluJo SINE Alu -10 302 1 2599 29 0 10 chr11 79051670 79051977 -69731495 + AluY SINE Alu 1 304 -7 549 294 66 11 chr11 79052371 79052643 -69730829 - LTR33 LTR ERVL -19 502 216 220 284 235 49 chr11 79052800 79053043 -69730429 - L2 LINE L2 -8 3264 2977 440 258 103 42 chr11 79053107 79053320 -69730152 + MIR SINE MIR 28 253 -9 234 250 33 0 chr11 79053587 79053647 -69729825 - L3 LINE CR1 -109 1468 1407 277 356 96 0 chr11 79053994 79054140 -69729332 + L3 LINE CR1 1303 1462 -115 183 80 0 0 chr11 79054708 79054733 -69728739 + (GGGGA)n Simple_repeat Simple_repeat 2 26 0 334 291 55 0 chr11 79055841 79055951 -69727521 + MIR SINE MIR 33 148 -114 456 337 107 47 chr11 79057298 79057728 -69725744 + L2 LINE L2 2812 3267 -5 212 289 0 0 chr11 79058682 79058734 -69724738 - MIR SINE MIR -136 72 21 215 245 0 20 chr11 79059544 79059593 -69723879 + (CAGA)n Simple_repeat Simple_repeat 3 50 0 283 311 50 17 chr11 79059642 79059761 -69723711 + L2 LINE L2 3150 3272 0 304 295 8 16 chr11 79060316 79060438 -69723034 + GA-rich Low_complexity Low_complexity 2 122 0 1532 152 70 40 chr11 79062039 79062341 -69721131 - AluJb SINE Alu -1 311 1 234 0 0 0 chr11 79063028 79063054 -69720418 + (TG)n Simple_repeat Simple_repeat 2 27 0 207 295 84 21 chr11 79063308 79063403 -69720069 + MIR SINE MIR 117 217 -45 236 312 81 23 chr11 79063691 79063819 -69719653 - MIR SINE MIR -62 146 41 267 244 0 89 chr11 79064883 79064973 -69718499 + MIR3 SINE MIR 104 185 -23 466 242 81 0 chr11 79065035 79065159 -69718313 - MIR SINE MIR -78 184 51 625 236 30 94 chr11 79065245 79065448 -69718024 - MER91B DNA MER1_type 0 190 1 444 262 145 65 chr11 79066061 79066275 -69717197 + MIR SINE MIR 28 258 -4 194 176 0 0 chr11 79066292 79066326 -69717146 - L2 LINE L2 -33 3239 3206 262 288 180 18 chr11 79066496 79066607 -69716865 + MIR SINE MIR 121 249 -13 957 169 13 0 chr11 79066645 79066799 -69716673 - FRAM SINE Alu -21 155 1 271 215 89 13 chr11 79066801 79066880 -69716592 + MIR SINE MIR 52 136 -72 298 246 200 9 chr11 79067306 79067416 -69716056 + MIR SINE MIR 117 247 -15 933 259 36 75 chr11 79068267 79068374 -69715098 + L1MC5 LINE L1 7389 7499 -462 2277 96 3 0 chr11 79068374 79068667 -69714805 - AluSp SINE Alu -19 294 1 933 259 36 75 chr11 79068667 79069107 -69714365 + L1MC5 LINE L1 7499 7915 -46 194 300 22 33 chr11 79069323 79069413 -69714059 - MIR SINE MIR -85 123 35 499 344 62 5 chr11 79069768 79069990 -69713482 - MIR SINE MIR -25 237 4 182 372 40 34 chr11 79070205 79070353 -69713119 + L2 LINE L2 2727 2875 -439 209 222 100 33 chr11 79071216 79071306 -69712166 + MIR SINE MIR 32 127 -81 219 247 13 26 chr11 79071530 79071607 -69711865 + GA-rich Low_complexity Low_complexity 3 78 0 513 310 102 9 chr11 79073714 79073940 -69709532 + MIR SINE MIR 16 262 0 264 234 85 53 chr11 79073964 79074058 -69709414 + MIR SINE MIR 166 262 0 201 150 0 50 chr11 79074067 79074107 -69709365 + L2 LINE L2 3217 3254 -18 231 337 0 0 chr11 79074260 79074346 -69709126 + MIR SINE MIR 42 127 -81 633 368 59 38 chr11 79074793 79074822 -69708650 + L1MC4a LINE L1 4717 4744 -1402 2236 82 3 7 chr11 79074822 79075127 -69708345 + AluY SINE Alu 1 304 -7 633 368 59 38 chr11 79075127 79075602 -69707870 + L1MC4a LINE L1 4744 5232 -914 444 321 76 36 chr11 79075619 79076260 -69707212 + L1MC4a LINE L1 5254 5977 -1831 379 297 45 0 chr11 79076269 79076380 -69707092 + L1MC4a LINE L1 6078 6193 -1615 235 386 47 30 chr11 79076887 79077123 -69706349 + L2 LINE L2 2222 2461 -853 841 267 5 0 chr11 79077931 79078118 -69705354 + MIR SINE MIR 56 243 -19 266 279 78 7 chr11 79078905 79079059 -69704413 - L1ME LINE L1 -328 5793 5629 308 388 53 26 chr11 79079460 79079612 -69703860 - L1ME4a LINE L1 -63 6058 5903 236 260 0 104 chr11 79079613 79079709 -69703763 + MIR SINE MIR 8 93 -169 314 209 47 0 chr11 79079727 79079813 -69703659 - HsTC2 DNA Tc2 -1806 92 3 373 206 16 119 chr11 79079815 79079879 -69703593 + MIR SINE MIR 101 148 -114 2198 78 3 0 chr11 79079879 79080201 -69703271 + AluY SINE Alu 1 323 0 373 206 16 119 chr11 79080201 79080261 -69703211 + MIR SINE MIR 148 213 -49 1681 163 54 10 chr11 79080267 79080561 -69702911 - AluJb SINE Alu -5 307 1 715 268 38 42 chr11 79080575 79080822 -69702650 - L1ME4a LINE L1 -258 5863 5616 854 167 0 0 chr11 79080822 79080954 -69702518 - FLAM_A SINE Alu 0 133 2 715 268 38 42 chr11 79080954 79081019 -69702453 - L1ME4a LINE L1 -505 5616 5552 2241 63 49 0 chr11 79081028 79081315 -69702157 + AluY SINE Alu 1 301 -10 265 225 28 28 chr11 79081318 79081389 -69702083 - MIR SINE MIR -106 156 86 229 300 29 0 chr11 79081537 79081607 -69701865 - MIR3 SINE MIR -43 165 94 423 228 99 0 chr11 79081788 79081889 -69701583 - AluJb SINE Alu -17 295 185 261 260 73 21 chr11 79081889 79081985 -69701487 - MIR SINE MIR -38 224 124 1487 155 0 25 chr11 79081988 79082233 -69701239 - AluJb SINE Alu -73 239 1 286 229 24 12 chr11 79082354 79082437 -69701035 - L3 LINE CR1 -68 1509 1426 351 296 8 38 chr11 79082439 79082571 -69700901 + MIR SINE MIR 9 136 -126 * 476 224 22 31 chr11 79082565 79082707 -69700765 + MIR3 SINE MIR 46 187 -21 320 291 110 8 chr11 79083111 79083238 -69700234 - MIR SINE MIR -31 231 92 275 245 43 21 chr11 79083272 79083366 -69700106 + MIR SINE MIR 19 114 -94 321 235 94 0 chr11 79083898 79083983 -69699489 + L2 LINE L2 2995 3087 -185 202 279 21 66 chr11 79084073 79084223 -69699249 - MIR SINE MIR -55 153 13 292 291 46 71 chr11 79084474 79084635 -69698837 - MIR SINE MIR -61 147 16 402 202 32 81 chr11 79084731 79084855 -69698617 - MIR SINE MIR -80 182 65 325 348 37 51 chr11 79085293 79085566 -69697906 + L2 LINE L2 2917 3185 -87 737 267 16 16 chr11 79085676 79085867 -69697605 + MIR SINE MIR 40 230 -32 207 277 197 16 chr11 79086715 79086903 -69696569 + L2 LINE L2 2869 3090 -182 628 313 39 11 chr11 79088139 79088318 -69695154 + MER91B DNA MER1_type 2 185 -5 370 275 109 12 chr11 79088657 79088829 -69694643 + MIR SINE MIR 64 259 -3 246 274 74 0 chr11 79088823 79088918 -69694554 + L2 LINE L2 3146 3247 -25 * 213 345 161 6 chr11 79089750 79089924 -69693548 - L3 LINE CR1 -7 1570 1370 485 215 50 1 chr11 79089961 79090075 -69693397 + MIR SINE MIR 35 151 -62 204 235 132 0 chr11 79090185 79090253 -69693219 - L3 LINE CR1 -213 1364 1288 285 313 32 55 chr11 79090283 79090465 -69693007 + MIR SINE MIR 24 205 -57 231 293 93 0 chr11 79090515 79090590 -69692882 - L3 LINE CR1 -304 1273 1192 321 273 8 73 chr11 79090845 79090994 -69692478 - MIR SINE MIR -47 161 20 264 324 90 0 chr11 79091020 79091131 -69692341 - MIR SINE MIR -112 150 30 277 298 39 0 chr11 79091255 79091359 -69692113 + L1M4 LINE L1 4881 4988 -1158 372 371 114 15 chr11 79091739 79092011 -69691461 - L1 LINE L1 -852 5294 4996 21 36 0 0 chr11 79092170 79092198 -69691274 + AT_rich Low_complexity Low_complexity 1 28 0 302 264 16 16 chr11 79092202 79092323 -69691149 - L1P LINE L1 -1143 5003 4883 190 276 76 48 chr11 79093500 79093605 -69689867 - L2 LINE L2 -2880 434 327 248 340 30 0 chr11 79093644 79093744 -69689728 - MIR SINE MIR -114 148 46 213 294 146 90 chr11 79094219 79094631 -69688841 - L2 LINE L2 -2 3270 2836 182 365 71 0 chr11 79095698 79095783 -69687689 - L3b LINE CR1 -143 1440 1350 358 308 62 20 chr11 79096474 79096620 -69686852 + MIR SINE MIR 111 262 0 200 288 17 0 chr11 79097023 79097082 -69686390 + GA-rich Low_complexity Low_complexity 2 61 0 189 291 139 35 chr11 79097712 79097798 -69685674 - MIR SINE MIR -56 152 58 293 289 20 9 chr11 79097998 79098122 -69685350 + MIR SINE MIR 1 127 -81 210 71 0 0 chr11 79098766 79098794 -69684678 + (CCTG)n Simple_repeat Simple_repeat 1 28 0 261 289 74 0 chr11 79098941 79099037 -69684435 - MIR SINE MIR -63 145 59 961 260 145 36 chr11 79099351 79099640 -69683832 + L2 LINE L2 2700 2956 -357 2079 113 14 0 chr11 79099640 79099933 -69683539 - AluSx SINE Alu -15 297 1 961 260 145 36 chr11 79099933 79100209 -69683263 + L2 LINE L2 2956 3309 -4 448 321 8 17 chr11 79100213 79100419 -69683053 - MIR SINE MIR -1 261 60 358 304 88 7 chr11 79100673 79100821 -69682651 - MIR SINE MIR -71 191 32 215 274 48 0 chr11 79100833 79100895 -69682577 - L2 LINE L2 -33 3280 3216 218 229 148 0 chr11 79100927 79100988 -69682484 - MIR SINE MIR -35 227 158 2925 144 25 66 chr11 79101008 79101568 -69681904 - L1MB7 LINE L1 -19 6165 5629 1897 113 26 0 chr11 79101568 79101833 -69681639 + AluSx SINE Alu 29 300 -12 2925 144 25 66 chr11 79101833 79101861 -69681611 - L1MB7 LINE L1 -555 5629 5601 725 229 92 0 chr11 79101861 79102014 -69681458 - AluJo SINE Alu -28 284 118 386 82 33 0 chr11 79102014 79102075 -69681397 - L1M4 LINE L1 -580 5604 5542 580 214 84 0 chr11 79102082 79102213 -69681259 - MIR SINE MIR -106 156 15 1605 171 26 0 chr11 79102220 79102525 -69680947 + MER58B DNA MER1_type 28 340 -1 220 254 82 57 chr11 79103306 79103428 -69680044 + MIR SINE MIR 46 146 -62 184 315 36 36 chr11 79103801 79103912 -69679560 + L2 LINE L2 2147 2257 -1057 200 320 85 51 chr11 79104005 79104364 -69679108 + L2 LINE L2 2550 3158 -114 330 260 20 30 chr11 79105031 79105131 -69678341 + MIR SINE MIR 48 146 -62 943 148 131 18 chr11 79105131 79105390 -69678082 + L1MB7 LINE L1 5770 6057 -123 2156 86 0 4 chr11 79105392 79105672 -69677800 + AluSx SINE Alu 1 279 -33 318 273 58 8 chr11 79105895 79106016 -69677456 + LTR67 LTR ERVL 429 555 -2 861 145 0 14 chr11 79106089 79106234 -69677238 + FLAM_C SINE Alu 1 143 0 2808 186 47 13 chr11 79106442 79106996 -69676476 + L1MC2 LINE L1 5761 6333 -11 378 0 0 0 chr11 79106998 79107040 -69676432 + (CA)n Simple_repeat Simple_repeat 2 43 0 374 264 12 15 chr11 79107053 79107163 -69676309 - MIR SINE MIR -90 118 11 333 225 9 81 chr11 79107525 79107636 -69675836 + MIR3 SINE MIR 99 201 -7 288 200 111 11 chr11 79108141 79108231 -69675241 + L2 LINE L2 2957 3055 -217 227 309 72 14 chr11 79108286 79108425 -69675047 - L2 LINE L2 -227 3045 2899 333 202 4 0 chr11 79108717 79108783 -69674689 + MIR SINE MIR 56 124 -84 223 330 78 0 chr11 79109472 79109575 -69673897 - L3 LINE CR1 -5 1572 1462 190 282 117 83 chr11 79110009 79110335 -69673137 + L2 LINE L2 2829 3165 -107 1245 101 6 0 chr11 79111224 79111392 -69672080 - FRAM SINE Alu -7 169 1 453 280 76 0 chr11 79111395 79111513 -69671959 + MIR SINE MIR 44 170 -92 193 294 87 0 chr11 79111880 79111972 -69671500 - L2 LINE L2 -17 3255 3156 186 256 265 17 chr11 79112932 79113049 -69670423 + MER5B DNA MER1_type 14 159 -19 * 593 146 0 10 chr11 79112972 79113075 -69670397 - MER5A DNA MER1_type -84 105 4 861 234 51 5 chr11 79113079 79113276 -69670196 + MIR SINE MIR 10 215 -47 236 278 132 28 chr11 79113388 79113532 -69669940 - MIR3 SINE MIR -47 161 3 202 322 133 0 chr11 79114084 79114174 -69669298 + MIR3 SINE MIR 67 168 -40 2045 124 10 0 chr11 79114224 79114514 -69668958 - AluSq SINE Alu -15 298 6 306 0 0 0 chr11 79114719 79114753 -69668719 + (CA)n Simple_repeat Simple_repeat 1 34 0 1945 212 131 41 chr11 79114754 79114871 -69668601 + Zaphod DNA AcHobo 87 192 -3839 1069 126 16 60 chr11 79114871 79115053 -69668419 - FAM SINE Alu -1 174 1 1945 212 131 41 chr11 79115053 79115690 -69667782 + Zaphod DNA AcHobo 192 909 -3122 1999 123 16 26 chr11 79115692 79116002 -69667470 - AluSx SINE Alu -5 307 1 391 142 98 44 chr11 79116014 79116160 -69667312 - Zaphod DNA AcHobo -330 3701 3564 1992 121 4 0 chr11 79116160 79116461 -69667011 + AluSx SINE Alu 1 302 0 1940 127 0 11 chr11 79116475 79116759 -69666713 + AluSg SINE Alu 1 281 -29 32 26 0 0 chr11 79116788 79116827 -69666645 + AT_rich Low_complexity Low_complexity 1 39 0 996 117 0 14 chr11 79116830 79116975 -69666497 + AluSg/x SINE Alu 159 301 -11 599 220 54 99 chr11 79116983 79117296 -69666176 + Zaphod DNA AcHobo 3733 4031 0 255 228 0 51 chr11 79117856 79117935 -69665537 + MIR3 SINE MIR 2 76 -132 2099 143 0 6 chr11 79118258 79118572 -69664900 - AluJb SINE Alu 0 312 1 250 311 56 20 chr11 79119323 79119488 -69663984 + MIR SINE MIR 48 214 -48 * 404 185 43 11 chr11 79119467 79119559 -69663913 - MIR SINE MIR -69 139 45 363 317 75 25 chr11 79120358 79120598 -69662874 + LTR16C LTR ERVL 222 473 -18 278 317 77 0 chr11 79120615 79120719 -69662753 - MIR SINE MIR -98 164 53 246 174 0 0 chr11 79120860 79120906 -69662566 + T-rich Low_complexity Low_complexity 1 46 0 210 322 0 98 chr11 79121117 79121260 -69662212 + L3 LINE CR1 1303 1431 -146 218 303 156 35 chr11 79122273 79122587 -69660885 + L2 LINE L2 2875 3226 -46 191 319 11 32 chr11 79123428 79123522 -69659950 + L2 LINE L2 2442 2533 -781 204 390 11 0 chr11 79123724 79123819 -69659653 + L2 LINE L2 2915 3010 -262 979 226 75 4 chr11 79123936 79124010 -69659462 - MIR SINE MIR -5 257 190 804 291 97 48 chr11 79124010 79124508 -69658964 + MLT1G1 LTR MaLR 1 532 -63 2241 93 3 3 chr11 79124508 79124809 -69658663 - AluSx SINE Alu -11 301 1 804 291 97 48 chr11 79124809 79124877 -69658595 + MLT1G1 LTR MaLR 532 595 0 979 226 75 4 chr11 79124877 79125041 -69658431 - MIR SINE MIR -72 190 2 202 227 23 0 chr11 79125066 79125110 -69658362 + L2 LINE L2 3226 3270 -2 278 309 12 0 chr11 79125477 79125558 -69657914 + MIR SINE MIR 38 119 -89 2352 157 50 18 chr11 79125883 79126323 -69657149 + L1MB2 LINE L1 5716 6169 -2 2284 93 13 0 chr11 79126334 79126635 -69656837 + AluSg SINE Alu 1 305 -5 208 204 0 0 chr11 79126682 79126726 -69656746 - L2 LINE L2 -213 3059 3016 347 326 58 29 chr11 79126875 79127047 -69656425 + MIR3 SINE MIR 15 191 -17 401 310 56 7 chr11 79127519 79127661 -69655811 + MIR SINE MIR 113 261 -1 275 270 20 70 chr11 79128180 79128280 -69655192 + L3 LINE CR1 1482 1576 -1 289 275 25 33 chr11 79128718 79128838 -69654634 - MIR SINE MIR -143 119 1 410 261 45 9 chr11 79128853 79128964 -69654508 - MIR3 SINE MIR -42 166 52 371 328 150 0 chr11 79129437 79129617 -69653855 - MIR SINE MIR -8 254 48 350 373 49 11 chr11 79129842 79130027 -69653445 - MIR SINE MIR -24 238 47 280 267 167 0 chr11 79131079 79131169 -69652303 - MIR SINE MIR -66 196 92 2394 80 0 0 chr11 79131169 79131468 -69652004 - AluSx SINE Alu -13 299 1 189 320 93 41 chr11 79132532 79132629 -69650843 + L2 LINE L2 3212 3313 0 348 286 122 27 chr11 79132865 79133012 -69650460 - MER103 DNA DNA 0 166 6 363 286 102 26 chr11 79133284 79133459 -69650013 + MIR SINE MIR 20 207 -55 186 143 0 0 chr11 79133586 79133621 -69649851 + (TGGA)n Simple_repeat Simple_repeat 2 36 0 396 0 0 0 chr11 79133770 79133814 -69649658 + (CA)n Simple_repeat Simple_repeat 2 45 0 1905 91 109 0 chr11 79134122 79134396 -69649076 + AluSq SINE Alu 1 304 -9 229 264 14 28 chr11 79134462 79134534 -69648938 - L2 LINE L2 -4 3268 3198 243 347 0 0 chr11 79134654 79134737 -69648735 + MIR SINE MIR 75 156 -63 367 281 83 8 chr11 79134844 79134965 -69648507 - MIR SINE MIR -112 150 21 364 230 43 81 chr11 79135355 79135516 -69647956 + MIR3 SINE MIR 12 166 -42 284 292 53 70 chr11 79136180 79136351 -69647121 + L3b LINE CR1 1275 1442 -141 515 223 45 70 chr11 79136372 79136564 -69646908 - MIR SINE MIR -60 202 13 357 322 117 0 chr11 79137521 79137692 -69645780 + LTR33 LTR ERVL 10 200 -321 363 232 20 0 chr11 79137745 79137844 -69645628 + LTR33 LTR ERVL 315 415 -106 487 340 67 10 chr11 79138158 79138367 -69645105 - MIR SINE MIR -7 255 35 2247 158 12 60 chr11 79138367 79138665 -69644807 + LTR32 LTR ERVL 15 283 -188 2145 102 3 19 chr11 79138665 79138979 -69644493 + AluSp SINE Alu 5 313 0 2247 158 12 60 chr11 79138979 79139160 -69644312 + LTR32 LTR ERVL 283 471 0 252 327 80 0 chr11 79139616 79139729 -69643743 - MIR SINE MIR -33 229 108 188 300 44 11 chr11 79139823 79139913 -69643559 + L3 LINE CR1 1408 1500 -77 556 178 185 7 chr11 79139921 79140056 -69643416 - MER5B DNA MER1_type -16 162 4 180 316 213 39 chr11 79140056 79140100 -69643372 + L3b LINE CR1 1502 1572 -11 247 304 0 0 chr11 79140946 79141015 -69642457 - L2 LINE L2 -4 3268 3200 837 220 28 0 chr11 79141018 79141195 -69642277 - MIR SINE MIR -1 261 80 191 262 16 16 chr11 79141472 79141533 -69641939 - MIR3 SINE MIR -137 71 11 265 298 191 7 chr11 79141754 79141895 -69641577 - MIR SINE MIR -7 255 89 229 325 71 26 chr11 79142573 79142727 -69640745 - MIR3 SINE MIR -14 194 34 576 286 132 5 chr11 79142844 79143057 -69640415 + MIR SINE MIR 23 262 0 332 335 60 50 chr11 79143624 79143824 -69639648 - MIR SINE MIR -5 257 56 397 284 187 0 chr11 79144633 79144767 -69638705 - MIR SINE MIR -67 195 37 201 278 69 0 chr11 79144891 79144963 -69638509 + MIR SINE MIR 87 163 -99 248 299 13 97 chr11 79145559 79145713 -69637759 + MIR3 SINE MIR 15 155 -53 231 361 19 19 chr11 79145916 79146024 -69637448 + MIR3 SINE MIR 55 162 -46 287 283 22 43 chr11 79146402 79146494 -69636978 + MIR SINE MIR 97 186 -76 195 42 0 0 chr11 79146494 79146518 -69636954 + (CGGGG)n Simple_repeat Simple_repeat 4 27 0 26 0 0 0 chr11 79147184 79147210 -69636262 + AT_rich Low_complexity Low_complexity 1 26 0 239 229 0 0 chr11 79147249 79147297 -69636175 - MER45 DNA AcHobo -130 48 1 * 861 172 6 6 chr11 79147297 79147474 -69635998 - MER96B DNA MER1_type? -239 178 2 205 320 108 82 chr11 79147476 79147745 -69635727 + L2 LINE L2 2997 3272 0 339 270 58 0 chr11 79148593 79148721 -69634751 + MIR SINE MIR 104 241 -21 284 308 10 10 chr11 79148832 79148961 -69634511 - MIR SINE MIR -73 135 23 352 271 111 35 chr11 79150401 79150545 -69632927 - L1ME4a LINE L1 0 6121 5967 1597 152 52 7 chr11 79150618 79150908 -69632564 + AluJo SINE Alu 2 304 -8 278 287 21 35 chr11 79151162 79151305 -69632167 - L1ME4a LINE L1 -382 5739 5599 311 175 181 23 chr11 79151337 79151497 -69631975 - L1MC4a LINE L1 -360 5761 5695 480 264 119 22 chr11 79151566 79151767 -69631705 - MIR3 SINE MIR -34 228 2 289 320 37 28 chr11 79151994 79152177 -69631295 - MIR SINE MIR -67 195 17 214 360 50 25 chr11 79153054 79153215 -69630257 + MIR SINE MIR 87 251 -11 372 291 106 7 chr11 79153259 79153410 -69630062 + MIR SINE MIR 41 206 -56 499 224 56 28 chr11 79153568 79153711 -69629761 + MIR3 SINE MIR 19 165 -43 205 299 121 43 chr11 79154089 79154296 -69629176 - L2 LINE L2 -2 3270 3048 186 264 66 75 chr11 79154398 79154504 -69628968 + MIR SINE MIR 101 205 -57 2146 117 0 0 chr11 79154730 79155028 -69628444 - AluSx SINE Alu -14 298 1 1713 174 3 0 chr11 79155032 79155314 -69628158 - AluSx SINE Alu 0 312 30 1070 270 125 24 chr11 79155318 79155774 -69627698 + MLT1J LTR MaLR 1 502 -9 238 306 82 10 chr11 79155785 79155883 -69627589 - MIR SINE MIR -53 209 105 306 269 19 28 chr11 79155928 79156036 -69627436 - MIR SINE MIR -84 124 18 1908 156 3 0 chr11 79157075 79157383 -69626089 - AluJo SINE Alu -3 309 1 426 156 119 37 chr11 79157550 79157659 -69625813 - MIR SINE MIR -70 192 75 364 227 57 0 chr11 79157699 79157787 -69625685 + MIR SINE MIR 79 171 -91 544 167 0 0 chr11 79158387 79158477 -69624995 + L2 LINE L2 3222 3311 -2 189 294 59 15 chr11 79158521 79158589 -69624883 + L2 LINE L2 3025 3095 -177 278 255 39 10 chr11 79159166 79159268 -69624204 + MER69 DNA AcHobo 2400 2504 -22 340 335 146 47 chr11 79159732 79160117 -69623355 - L2 LINE L2 -2 3270 2848 921 251 89 8 chr11 79160120 79160355 -69623117 + MIR SINE MIR 4 257 -5 310 265 19 0 chr11 79160893 79160984 -69622488 + MIR SINE MIR 88 184 -24 1615 135 109 4 chr11 79162244 79162511 -69620961 + AluSx SINE Alu 1 295 -17 5215 188 67 22 chr11 79162935 79163354 -69620118 - Charlie1a DNA MER1_type -1310 1451 1052 1816 164 10 3 chr11 79163354 79163653 -69619819 - AluJo SINE Alu -11 301 1 5215 188 67 22 chr11 79163653 79163734 -69619738 - Charlie1a DNA MER1_type -1709 1052 976 2018 70 92 4 chr11 79163734 79164007 -69619465 + AluSg SINE Alu 1 297 -13 5215 188 67 22 chr11 79164007 79164852 -69618620 - Charlie1a DNA MER1_type -1785 976 45 1157 191 71 17 chr11 79164855 79165219 -69618253 - MER54B LTR ERVL -29 764 477 297 51 0 0 chr11 79165223 79165262 -69618210 + (TG)n Simple_repeat Simple_repeat 1 39 0 301 324 47 14 chr11 79165685 79165833 -69617639 - L2 LINE L2 -4 3268 3116 538 86 20 5 chr11 79165961 79166050 -69617422 + pTR5 LTR ERV1 316 490 -224 189 121 155 0 chr11 79166076 79166134 -69617338 + L2 LINE L2 2344 2410 -904 2015 111 0 0 chr11 79166217 79166488 -69616984 + AluSx SINE Alu 1 271 -41 294 143 0 0 chr11 79166493 79166542 -69616930 + (GGGA)n Simple_repeat Simple_repeat 4 52 0 498 276 28 0 chr11 79166895 79167040 -69616432 - LTR16B LTR ERVL -120 344 196 986 149 0 0 chr11 79167040 79167231 -69616241 + AluSg/x SINE Alu 135 325 0 287 309 6 74 chr11 79167270 79167432 -69616040 - LTR16B LTR ERVL -306 158 8 584 210 90 42 chr11 79167437 79167604 -69615868 - MIR3 SINE MIR -16 192 18 264 281 104 67 chr11 79167669 79167804 -69615668 + L2 LINE L2 3006 3145 -127 3642 249 157 34 chr11 79167956 79169250 -69614222 - L2 LINE L2 -1 3312 1684 1815 148 7 33 chr11 79169250 79169554 -69613918 - AluJb SINE Alu -16 296 1 3642 249 157 34 chr11 79169554 79170058 -69613414 - L2 LINE L2 -1629 1684 1244 2164 82 61 0 chr11 79171012 79171305 -69612167 - AluSx SINE Alu -1 311 1 1858 149 3 0 chr11 79171309 79171591 -69611881 - AluSx SINE Alu 0 312 30 1070 270 125 24 chr11 79171595 79172051 -69611421 + MLT1J LTR MaLR 1 502 -9 238 306 82 10 chr11 79172062 79172160 -69611312 - MIR SINE MIR -53 209 105 306 269 19 28 chr11 79172205 79172313 -69611159 - MIR SINE MIR -84 124 18 211 198 89 0 chr11 79172321 79172478 -69610994 + (CTCTG)n Simple_repeat Simple_repeat 1 171 0 258 164 209 0 chr11 79172712 79172779 -69610693 - MER81 DNA DNA -33 81 1 1596 183 3 27 chr11 79172949 79173250 -69610222 + AluJo SINE Alu 1 294 -18 4275 128 46 74 chr11 79173421 79174229 -69609243 - LTR1 LTR ERV1 0 785 1 696 303 35 4 chr11 79174331 79174559 -69608913 + MIR SINE MIR 28 262 0 199 347 57 40 chr11 79174574 79174698 -69608774 - L2 LINE L2 -32 3240 3115 752 172 0 8 chr11 79174709 79174843 -69608629 + FLAM_C SINE Alu 11 143 0 1935 84 0 4 chr11 79175777 79176027 -69607445 + AluSq SINE Alu 2 250 -63 378 236 39 62 chr11 79176159 79176337 -69607135 - L1MC5 LINE L1 -26 7935 7762 269 372 0 0 chr11 79176483 79176569 -69606903 + L2 LINE L2 3168 3253 -19 2104 117 10 0 chr11 79176818 79177125 -69606347 + AluSx SINE Alu 1 310 -2 583 192 39 8 chr11 79177445 79177575 -69605897 - MER45A DNA AcHobo -1 177 44 458 200 62 19 chr11 79177590 79177750 -69605722 + MER53 DNA DNA 23 189 0 1043 180 27 0 chr11 79177823 79178006 -69605466 - MER5A DNA MER1_type -1 188 1 422 303 109 51 chr11 79178137 79178487 -69604985 - L2 LINE L2 -17 3255 2886 304 265 43 117 chr11 79178716 79178878 -69604594 - L2 LINE L2 0 3313 3164 642 311 167 6 chr11 79179499 79179617 -69603855 + L2 LINE L2 2883 2981 -332 2101 193 92 38 chr11 79179617 79180094 -69603378 + MLT1D LTR MaLR 3 505 0 642 311 167 6 chr11 79180094 79180341 -69603131 + L2 LINE L2 2981 3307 -6 1945 109 42 3 chr11 79180341 79180624 -69602848 + AluSx SINE Alu 1 294 -18 2201 82 21 0 chr11 79180629 79180910 -69602562 + AluSg1 SINE Alu 2 288 -21 922 129 129 52 chr11 79181417 79181503 -69601969 + MER96B DNA MER1_type? 1 79 -338 2297 95 0 0 chr11 79181503 79181807 -69601665 - AluY SINE Alu -7 304 1 922 129 129 52 chr11 79181807 79181952 -69601520 + MER96B DNA MER1_type? 79 250 -167 2076 90 0 4 chr11 79182002 79182269 -69601203 - AluSq SINE Alu -47 266 1 1034 60 113 13 chr11 79182296 79182447 -69601025 + AluSg/x SINE Alu 130 295 -15 828 107 16 0 chr11 79182463 79182584 -69600888 + AluJo SINE Alu 12 134 -178 2444 70 0 10 chr11 79182586 79182900 -69600572 + AluY SINE Alu 1 311 0 239 229 0 0 chr11 79182948 79182996 -69600476 - MER45A DNA AcHobo -130 48 1 * 861 172 6 6 chr11 79182996 79183173 -69600299 - MER96B DNA MER1_type? -239 178 2 205 320 108 82 chr11 79183175 79183444 -69600028 + L2 LINE L2 2997 3272 0 339 270 58 0 chr11 79184292 79184420 -69599052 + MIR SINE MIR 104 241 -21 284 308 10 10 chr11 79184531 79184660 -69598812 - MIR SINE MIR -73 135 23 453 261 93 48 chr11 79186102 79186312 -69597160 - HAL1b LINE L1 0 6121 1141 1659 149 52 3 chr11 79186318 79186607 -69596865 + AluJo SINE Alu 2 304 -8 278 287 21 35 chr11 79186861 79187004 -69596468 - L1ME LINE L1 -382 5739 5599 311 175 181 23 chr11 79187036 79187196 -69596276 - L1MC4a LINE L1 -360 5761 5695 480 264 119 22 chr11 79187265 79187466 -69596006 - MIR3 SINE MIR -34 228 2 289 320 37 28 chr11 79187693 79187876 -69595596 - MIR SINE MIR -67 195 17 214 360 50 25 chr11 79188753 79188914 -69594558 + MIR SINE MIR 87 251 -11 372 291 106 7 chr11 79188958 79189109 -69594363 + MIR SINE MIR 41 206 -56 499 224 56 28 chr11 79189267 79189410 -69594062 + MIR3 SINE MIR 19 165 -43 205 299 121 43 chr11 79189789 79189996 -69593476 - L2 LINE L2 -2 3270 3048 186 264 66 75 chr11 79190098 79190204 -69593268 + MIR SINE MIR 101 205 -57 2169 114 0 0 chr11 79190430 79190728 -69592744 - AluSx SINE Alu -14 298 1 456 316 74 21 chr11 79190825 79191015 -69592457 + L3 LINE CR1 1372 1571 -6 260 192 77 0 chr11 79191601 79191653 -69591819 + L2 LINE L2 3210 3265 -48 355 217 11 43 chr11 79191845 79191937 -69591535 - MIR SINE MIR -117 145 57 403 191 11 0 chr11 79194846 79194935 -69588537 - MER94 DNA DNA -43 91 2 240 328 125 52 chr11 79196292 79196524 -69586948 - L2 LINE L2 -50 3263 3015 180 295 64 0 chr11 79197407 79197485 -69585987 - MIR SINE MIR -70 192 110 2196 124 0 13 chr11 79197656 79197962 -69585510 - AluSx SINE Alu -10 302 1 296 233 68 0 chr11 79197971 79198044 -69585428 - MIR SINE MIR -77 185 108 251 205 241 0 chr11 79198175 79198258 -69585214 - MIR SINE MIR -61 147 45 1822 163 30 13 chr11 79198355 79198656 -69584816 + AluJb SINE Alu 1 306 -6 747 152 23 70 chr11 79199722 79199762 -69583710 - MIR SINE MIR -26 236 196 2426 96 0 0 chr11 79199762 79200063 -69583409 - AluSx SINE Alu -11 301 1 747 152 23 70 chr11 79200063 79200193 -69583279 - MIR SINE MIR -66 196 74 236 307 13 13 chr11 79200394 79200469 -69583003 - MIR SINE MIR -86 122 48 322 250 213 0 chr11 79201103 79201267 -69582205 - L2 LINE L2 -87 3185 2987 255 103 0 0 chr11 79201414 79201453 -69582019 + (TG)n Simple_repeat Simple_repeat 2 40 0 516 234 26 32 chr11 79201479 79201633 -69581839 - L1MC5 LINE L1 -66 7895 7743 537 266 41 12 chr11 79201681 79201850 -69581622 - MER5A DNA MER1_type 0 189 16 331 302 85 0 chr11 79201874 79202003 -69581469 + MIR SINE MIR 100 239 -23 652 160 8 8 chr11 79203404 79203523 -69579949 - FLAM_A SINE Alu -4 138 20 207 283 20 50 chr11 79203854 79203953 -69579519 + MIR SINE MIR 36 131 -77 719 305 90 16 chr11 79204208 79204595 -69578877 + L2 LINE L2 2862 3277 -36 215 267 33 0 chr11 79204595 79204655 -69578817 - L2 LINE L2 -219 3053 2992 446 341 40 0 chr11 79204718 79204891 -69578581 - MIR SINE MIR -44 218 39 189 272 161 12 chr11 79205000 79205081 -69578391 - MIR SINE MIR -62 200 108 587 265 90 25 chr11 79205562 79205762 -69577710 - MIR SINE MIR -19 243 31 361 247 31 0 chr11 79205874 79205971 -69577501 + L2 LINE L2 3155 3254 -18 865 249 87 0 chr11 79206003 79206232 -69577240 + MIR SINE MIR 12 260 -2 217 270 52 52 chr11 79206710 79206825 -69576647 + L2 LINE L2 2935 3049 -223 2247 102 21 0 chr11 79207215 79207500 -69575972 - AluSc SINE Alu -18 291 1 252 0 0 0 chr11 79207665 79207693 -69575779 + (CCCCCG)n Simple_repeat Simple_repeat 3 30 0 265 243 140 37 chr11 79207816 79207923 -69575549 - MLT1H LTR MaLR -1 594 477 * 560 266 46 50 chr11 79207903 79208144 -69575328 - MLT1H LTR MaLR -221 328 89 2768 325 83 52 chr11 79208265 79209021 -69574451 + HERVL LTR ERVL 921 1651 -4003 2019 103 0 0 chr11 79209021 79209273 -69574199 - AluSx SINE Alu -60 252 1 2768 325 83 52 chr11 79209273 79210846 -69572626 + HERVL LTR ERVL 1651 3324 -2330 182 300 100 30 chr11 79211010 79211110 -69572362 + L2 LINE L2 1811 1917 -1397 2458 85 0 3 chr11 79211130 79211435 -69572037 + AluSc SINE Alu 1 304 -5 2278 108 7 0 chr11 79211495 79211790 -69571682 + AluSx SINE Alu 1 297 -15 252 298 26 89 chr11 79211898 79212200 -69571272 + L2 LINE L2 2007 2289 -1025 582 144 10 0 chr11 79212361 79212458 -69571014 + L1M4 LINE L1 5467 5564 -610 549 187 103 0 chr11 79212531 79212638 -69570834 - FRAM SINE Alu -58 118 1 252 269 99 21 chr11 79213169 79213310 -69570162 - L2 LINE L2 -733 2581 2430 208 222 0 22 chr11 79214136 79214181 -69569291 + G-rich Low_complexity Low_complexity 4 47 0 2243 116 0 0 chr11 79214984 79215278 -69568194 - AluSx SINE Alu -18 294 1 246 32 0 0 chr11 79215433 79215464 -69568008 + (TG)n Simple_repeat Simple_repeat 2 32 0 227 349 0 0 chr11 79216231 79216314 -69567158 + L2 LINE L2 3190 3272 0 361 319 0 21 chr11 79216327 79216421 -69567051 - L1MC4 LINE L1 -1337 6705 6614 * 392 300 0 0 chr11 79216348 79216438 -69567034 + L1MC4 LINE L1 6613 6702 -1340 2231 92 0 39 chr11 79216455 79216761 -69566711 - AluSx SINE Alu -18 294 1 418 184 0 0 chr11 79219105 79219181 -69564291 - MER97c DNA MER1_type? -911 179 104 661 162 8 0 chr11 79219181 79219298 -69564174 - FLAM_A SINE Alu -5 137 20 269 187 132 55 chr11 79219301 79219392 -69564080 - MER97c DNA MER1_type? -991 99 2 206 274 20 78 chr11 79219814 79219916 -69563556 - MIR SINE MIR -67 195 100 238 204 0 0 chr11 79219992 79220036 -69563436 + MIR SINE MIR 219 262 0 2085 131 0 0 chr11 79221042 79221325 -69562147 + AluSx SINE Alu 22 304 -8 201 150 0 50 chr11 79221545 79221605 -69561867 + (TTTAA)n Simple_repeat Simple_repeat 4 60 0 282 280 47 0 chr11 79221889 79221996 -69561476 - MER91A DNA MER1_type -84 112 1 343 292 11 0 chr11 79222114 79222203 -69561269 + MIR SINE MIR 65 154 -108 251 305 61 57 chr11 79222488 79222734 -69560738 + L2 LINE L2 2996 3242 -30 708 303 60 49 chr11 79222774 79223630 -69559842 + L2 LINE L2 2421 3271 -1 313 287 143 51 chr11 79224190 79224406 -69559066 + MIR SINE MIR 21 256 -6 186 294 73 0 chr11 79224424 79224492 -69558980 - MIR3 SINE MIR -48 160 88 209 347 143 27 chr11 79224876 79225023 -69558449 + L2 LINE L2 3104 3267 -5 379 200 121 50 chr11 79225077 79225217 -69558255 - L2 LINE L2 0 3272 3123 534 321 113 30 chr11 79225446 79225942 -69557530 - L3 LINE CR1 -72 1505 969 180 0 0 0 chr11 79226069 79226089 -69557383 + (CCCCCA)n Simple_repeat Simple_repeat 5 24 0 191 167 24 0 chr11 79226179 79226221 -69557251 + CT-rich Low_complexity Low_complexity 2 44 0 237 135 0 0 chr11 79226247 79226284 -69557188 - L2 LINE L2 -9 3263 3227 360 289 34 34 chr11 79226478 79226627 -69556845 - MIR SINE MIR -55 207 59 415 252 116 20 chr11 79227345 79227492 -69555980 + MIR SINE MIR 47 207 -55 355 299 21 0 chr11 79228567 79228664 -69554808 - MIR SINE MIR -141 121 23 783 309 64 11 chr11 79229045 79229404 -69554068 - L2 LINE L2 -5 3267 2890 191 306 83 0 chr11 79229414 79229486 -69553986 - L2 LINE L2 -556 2758 2681 231 330 92 17 chr11 79230129 79230302 -69553170 + MIR SINE MIR 27 212 -50 277 262 36 0 chr11 79230554 79230638 -69552834 - MIR SINE MIR -71 191 105 382 282 0 0 chr11 79232340 79232425 -69551047 + L2 LINE L2 3187 3271 -1 207 238 48 32 chr11 79234084 79234147 -69549325 + L2 LINE L2 3207 3270 -2 762 281 110 4 chr11 79236712 79236975 -69546497 + MLT1I LTR MaLR 110 400 -9 580 219 19 0 chr11 79237459 79237564 -69545908 + MER81 DNA DNA 8 114 0 222 224 132 0 chr11 79238910 79238986 -69544486 + MIR SINE MIR 60 145 -63 377 279 120 32 chr11 79239829 79239987 -69543485 + MIR3 SINE MIR 16 187 -21 2751 122 7 19 chr11 79240178 79240611 -69542861 + MSTC LTR MaLR 1 428 0 269 309 64 0 chr11 79240727 79240821 -69542651 - L2 LINE L2 0 3313 3214 205 191 0 0 chr11 79241962 79242004 -69541468 + A-rich Low_complexity Low_complexity 1 42 0 662 306 57 16 chr11 79242071 79242316 -69541156 - MIR SINE MIR 0 262 8 244 267 99 38 chr11 79242335 79242466 -69541006 + L3 LINE CR1 1428 1566 -11 306 73 0 0 chr11 79242583 79242624 -69540848 + (TTCA)n Simple_repeat Simple_repeat 3 43 0 202 330 34 17 chr11 79243101 79243219 -69540253 + L2 LINE L2 2971 3090 -182 1519 217 37 30 chr11 79244660 79245141 -69538331 + MLT1F1 LTR MaLR 12 567 0 260 284 79 8 chr11 79245582 79245709 -69537763 + MIR SINE MIR 77 212 -50 288 329 86 0 chr11 79245806 79245946 -69537526 - L2 LINE L2 -2 3311 3160 2195 121 10 0 chr11 79247588 79247895 -69535577 + AluSx SINE Alu 1 310 -2 297 302 10 0 chr11 79248579 79248675 -69534797 + L1ME1 LINE L1 3340 3436 -2710 2199 101 28 0 chr11 79248677 79248965 -69534507 + AluSq SINE Alu 1 296 -17 249 235 37 0 chr11 79249439 79249520 -69533952 + (TG)n Simple_repeat Simple_repeat 2 85 0 2833 189 14 177 chr11 79249609 79249727 -69533745 + L1ME1 LINE L1 3426 3562 -2584 4677 89 93 1 chr11 79249727 79250414 -69533058 - L1PA13 LINE L1 -1 6162 5413 2833 189 14 177 chr11 79250414 79250541 -69532931 + L1ME1 LINE L1 3562 3708 -2438 1936 155 0 16 chr11 79250541 79250858 -69532614 + AluJb SINE Alu 1 312 0 2833 189 14 177 chr11 79250858 79251202 -69532270 + L1ME1 LINE L1 3708 4106 -2040 2437 79 0 13 chr11 79251202 79251506 -69531966 + AluY SINE Alu 1 300 -11 2833 189 14 177 chr11 79251506 79251551 -69531921 + L1ME1 LINE L1 4106 4157 -1989 739 193 0 0 chr11 79251551 79251670 -69531802 + AluSq/x SINE Alu 2 120 -192 186 43 0 0 chr11 79251673 79251696 -69531776 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 2833 189 14 177 chr11 79251696 79252122 -69531350 + L1ME1 LINE L1 4159 4653 -1493 2125 108 0 0 chr11 79252122 79252401 -69531071 + AluSx SINE Alu 25 303 -9 2833 189 14 177 chr11 79252401 79252595 -69530877 + L1ME1 LINE L1 4653 4877 -1269 872 164 12 53 chr11 79252595 79252766 -69530706 - FRAM SINE Alu -2 164 1 2833 189 14 177 chr11 79252766 79253187 -69530285 + L1ME1 LINE L1 4877 4830 -1316 484 210 68 110 chr11 79253187 79253406 -69530066 - MER63A DNA MER1_type 0 210 1 2833 189 14 177 chr11 79253406 79253439 -69530033 + L1ME1 LINE L1 4829 4866 -1280 1140 187 112 4 chr11 79253424 79253692 -69529780 + L1ME1 LINE L1 5706 6002 -164 * 431 217 38 0 chr11 79253711 79253817 -69529655 + L1MB7 LINE L1 6075 6184 0 186 342 43 34 chr11 79253942 79254059 -69529413 + L2 LINE L2 3155 3272 0 852 51 0 0 chr11 79254077 79254175 -69529297 - AluSg/x SINE Alu -22 288 191 359 287 50 0 chr11 79255850 79255981 -69527491 - MIR SINE MIR -60 148 47 186 221 174 35 chr11 79256616 79256702 -69526770 - MIR3 SINE MIR -7 201 104 463 281 98 0 chr11 79257003 79257156 -69526316 - MIR SINE MIR -14 248 81 400 266 59 35 chr11 79257997 79258166 -69525306 - MIR SINE MIR -33 229 57 510 294 43 0 chr11 79259231 79259418 -69524054 - MIR SINE MIR -19 243 49 2125 133 3 0 chr11 79259444 79259745 -69523727 - AluSx SINE Alu -10 302 1 766 156 28 0 chr11 79260591 79260732 -69522740 - L1M4 LINE L1 -2459 3687 3543 393 207 11 11 chr11 79261271 79261358 -69522114 - MER5A DNA MER1_type -100 89 3 427 261 103 12 chr11 79261613 79261778 -69521694 + MIR SINE MIR 21 200 -62 204 224 0 41 chr11 79262447 79262496 -69520976 + MIR SINE MIR 75 121 -87 234 226 245 0 chr11 79262497 79262599 -69520873 - MIR SINE MIR -70 192 66 485 331 6 17 chr11 79263144 79263322 -69520150 - MIR3 SINE MIR -3 205 30 249 108 0 0 chr11 79263344 79263381 -69520091 + (T)n Simple_repeat Simple_repeat 1 37 0 776 267 133 33 chr11 79263765 79264444 -69519028 - L2 LINE L2 -4 3309 2575 2059 127 41 0 chr11 79264635 79264926 -69518546 - AluSx SINE Alu -9 303 1 331 212 106 80 chr11 79266339 79266490 -69516982 - MER5A DNA MER1_type 0 189 35 2332 191 47 66 chr11 79266811 79267360 -69516112 + MER74A LTR ERVL 20 558 0 273 312 41 59 chr11 79267907 79268077 -69515395 + MIR3 SINE MIR 15 181 -27 814 158 6 6 chr11 79268130 79268295 -69515177 + GA-rich Low_complexity Low_complexity 3 167 0 455 275 12 35 chr11 79268298 79268469 -69515003 + L1ME4a LINE L1 5689 5855 -266 4664 124 16 3 chr11 79268952 79269663 -69513809 + L1PB4 LINE L1 5434 6153 -3 225 65 0 0 chr11 79270553 79270584 -69512888 + (CA)n Simple_repeat Simple_repeat 1 31 0 217 284 0 121 chr11 79270839 79270911 -69512561 - MER5A DNA MER1_type -20 169 115 7821 26 1 0 chr11 79270911 79271853 -69511619 + L1PA4 LINE L1 5212 6154 -1 217 284 0 121 chr11 79271853 79271896 -69511576 - MER5A DNA MER1_type -74 115 68 181 259 19 19 chr11 79271895 79271949 -69511523 + MER5A DNA MER1_type 114 167 -22 * 319 271 12 12 chr11 79272037 79272122 -69511350 - MER5A DNA MER1_type -84 105 21 245 297 42 34 chr11 79272127 79272245 -69511227 + L2 LINE L2 2934 3052 -220 3001 202 31 20 chr11 79272268 79272922 -69510550 - MER63C DNA MER1_type 0 930 270 329 210 16 0 chr11 79273306 79273368 -69510104 + MER63 DNA MER1_type 464 526 -534 581 182 104 7 chr11 79273474 79273577 -69509895 - MER63 DNA MER1_type -761 169 45 183 42 0 0 chr11 79273577 79273601 -69509871 + (TA)n Simple_repeat Simple_repeat 1 24 0 581 182 104 7 chr11 79273601 79273651 -69509821 - MER63 DNA MER1_type -885 45 1 209 291 94 17 chr11 79273716 79273833 -69509639 + L2 LINE L2 3148 3273 -40 929 204 64 18 chr11 79274028 79274248 -69509224 - MIR SINE MIR 0 262 33 230 203 0 0 chr11 79274637 79274684 -69508788 + MIR SINE MIR 74 121 -87 275 309 24 32 chr11 79274766 79274889 -69508583 - MIR SINE MIR -2 260 139 440 250 7 7 chr11 79275012 79275148 -69508324 + L1M4 LINE L1 4113 4248 -1898 317 204 127 70 chr11 79275151 79275308 -69508164 + L1MEd LINE L1 19 184 -5935 317 337 113 43 chr11 79275477 79275919 -69507553 + L1MEd LINE L1 174 646 -5473 516 266 105 44 chr11 79275960 79276692 -69506780 + L1MEd LINE L1 765 1576 -4734 1039 104 0 14 chr11 79276738 79276882 -69506590 + FLAM_C SINE Alu 1 142 -1 2077 107 18 0 chr11 79276889 79277170 -69506302 + AluSp SINE Alu 9 294 -19 8397 36 1 0 chr11 79277288 79278300 -69505172 + L1P LINE L1 4334 5346 -800 2148 238 45 31 chr11 79278433 79278560 -69504912 - L1M4 LINE L1 -1383 4763 4639 2201 150 22 8 chr11 79278560 79278919 -69504553 - THE1B LTR MaLR 0 364 1 2148 238 45 31 chr11 79278919 79279648 -69503824 - L1M4 LINE L1 -1507 4639 3895 2182 99 0 7 chr11 79279981 79280289 -69503183 - AluSg SINE Alu 0 306 1 196 222 167 19 chr11 79280623 79280731 -69502741 - MIR3 SINE MIR -23 185 62 424 304 29 0 chr11 79281127 79281268 -69502204 - MIR SINE MIR -58 150 28 180 77 0 0 chr11 79281462 79281488 -69501984 + (CAT)n Simple_repeat Simple_repeat 1 26 0 270 313 0 0 chr11 79281579 79281659 -69501813 + L2 LINE L2 3234 3313 0 1941 158 49 0 chr11 79282344 79282712 -69500760 + MER58D DNA MER1_type 1 386 0 243 310 11 23 chr11 79282897 79282984 -69500488 + L2 LINE L2 2999 3084 -188 2307 104 13 3 chr11 79283006 79283315 -69500157 + AluSx SINE Alu 1 312 0 269 200 0 71 chr11 79284358 79284428 -69499044 - MIR SINE MIR -12 250 186 * 334 281 0 42 chr11 79284420 79284516 -69498956 - L2 LINE L2 0 3313 3222 340 283 51 29 chr11 79284540 79284678 -69498794 - MIR SINE MIR -75 187 47 183 310 105 80 chr11 79284856 79285095 -69498377 + L2 LINE L2 3028 3272 0 269 276 165 24 chr11 79285157 79285327 -69498145 - MIR SINE MIR -21 241 48 200 176 0 0 chr11 79285884 79285918 -69497554 - MER5B DNA MER1_type -138 40 7 255 298 172 5 chr11 79286278 79286465 -69497007 + MIR SINE MIR 36 250 -12 909 198 89 28 chr11 79287249 79287497 -69495975 - L1ME3 LINE L1 -1 6161 5899 775 164 10 129 chr11 79287502 79287556 -69495916 + MER20 DNA MER1_type 14 73 -146 2500 67 3 3 chr11 79287556 79287856 -69495616 - AluY SINE Alu -11 300 1 775 164 10 129 chr11 79287856 79288002 -69495470 + MER20 DNA MER1_type 73 190 -29 1956 176 137 24 chr11 79288014 79288468 -69495004 - MLT1D LTR MaLR 0 505 1 1213 192 94 0 chr11 79288471 79288737 -69494735 - L1ME3 LINE L1 -359 5811 5521 214 298 71 21 chr11 79288980 79289121 -69494351 + L2 LINE L2 2592 2739 -575 218 310 95 84 chr11 79289272 79289546 -69493926 + L2 LINE L2 2996 3272 0 2188 82 0 0 chr11 79289646 79289914 -69493558 + AluSx SINE Alu 1 268 -44 666 346 98 27 chr11 79290538 79291272 -69492200 + L2 LINE L2 2034 2819 -495 1669 270 94 37 chr11 79291283 79292440 -69491032 + L1M4 LINE L1 3103 4325 -1821 368 302 56 22 chr11 79292548 79292780 -69490692 + L1M4 LINE L1 4797 5036 -1110 211 211 0 0 chr11 79292781 79292819 -69490653 + (TATATG)n Simple_repeat Simple_repeat 1 38 0 330 241 45 18 chr11 79292829 79292941 -69490531 + L1M4 LINE L1 4456 4570 -1576 536 302 7 7 chr11 79292973 79293122 -69490350 + MER5A DNA MER1_type 35 183 -6 846 216 11 6 chr11 79293136 79293312 -69490160 + MER5B DNA MER1_type 2 178 0 2031 110 0 60 chr11 79293409 79293727 -69489745 - AluSx SINE Alu -13 299 1 654 154 31 8 chr11 79293727 79293857 -69489615 - MIR SINE MIR -56 206 74 226 307 13 13 chr11 79294058 79294133 -69489339 - MIR SINE MIR -86 122 48 300 250 213 0 chr11 79294767 79294931 -69488541 - L2 LINE L2 -87 3185 2987 255 103 0 0 chr11 79295078 79295117 -69488355 + (TG)n Simple_repeat Simple_repeat 2 40 0 539 227 53 20 chr11 79295147 79295297 -69488175 - L1MC5 LINE L1 -64 7897 7743 496 266 41 12 chr11 79295345 79295514 -69487958 - MER5A DNA MER1_type 0 189 16 291 272 68 0 chr11 79295538 79295667 -69487805 + MIR SINE MIR 101 239 -23 679 160 8 8 chr11 79297067 79297186 -69486286 - FLAM_A SINE Alu -4 138 20 189 248 103 43 chr11 79297499 79297616 -69485856 + MIR3 SINE MIR 8 131 -77 627 297 90 16 chr11 79297871 79298258 -69485214 + L2 LINE L2 2862 3277 -36 204 267 33 0 chr11 79298258 79298318 -69485154 - L2 LINE L2 -219 3053 2992 384 341 40 0 chr11 79298381 79298554 -69484918 - MIR SINE MIR -44 218 39 587 265 90 25 chr11 79299230 79299430 -69484042 - MIR SINE MIR -19 243 31 374 247 31 0 chr11 79299542 79299639 -69483833 + L2 LINE L2 3155 3254 -18 881 215 11 11 chr11 79299671 79299862 -69483610 + MIR SINE MIR 12 202 -60 1646 153 0 83 chr11 79300737 79301050 -69482422 + AluJb SINE Alu 1 287 -25 281 292 19 26 chr11 79301086 79301240 -69482232 - L1MEc LINE L1 -4064 2332 2180 2396 100 170 14 chr11 79301335 79301705 -69481767 + MSTA LTR MaLR 1 428 0 226 152 0 0 chr11 79301843 79301876 -69481596 - MLT1K LTR MaLR -113 475 443 366 264 47 61 chr11 79301887 79302035 -69481437 - MLT1J LTR MaLR -35 476 331 394 264 8 24 chr11 79302215 79302340 -69481132 - MLT1J LTR MaLR -365 146 24 996 279 64 51 chr11 79302344 79302734 -69480738 - MLT1K LTR MaLR -144 444 50 684 297 39 31 chr11 79303736 79303992 -69479480 - MIR SINE MIR -2 260 3 2312 107 0 0 chr11 79304003 79304301 -69479171 - AluSq SINE Alu -15 298 1 409 163 156 37 chr11 79304301 79304436 -69479036 - MIR SINE MIR -83 179 29 197 278 56 37 chr11 79304917 79305025 -69478447 - MIR SINE MIR -62 146 37 243 318 7 14 chr11 79305236 79305384 -69478088 + (CGG)n Simple_repeat Simple_repeat 2 148 0 303 286 110 95 chr11 79306016 79306562 -69476910 + L1M2 LINE L1 803 1356 -5493 403 243 37 0 chr11 79307247 79307354 -69476118 + MIR SINE MIR 66 176 -86 30 59 0 0 chr11 79307359 79307410 -69476062 + AT_rich Low_complexity Low_complexity 1 51 0 293 167 50 33 chr11 79307410 79307470 -69476002 - L2 LINE L2 -8 3305 3245 248 216 108 0 chr11 79307460 79307534 -69475938 + MIR SINE MIR 175 256 -6 * 228 271 129 12 chr11 79310544 79310629 -69472843 + L2 LINE L2 3133 3227 -45 197 254 127 0 chr11 79310725 79310780 -69472692 - L2 LINE L2 -9 3263 3202 2194 85 0 60 chr11 79310850 79311166 -69472306 + AluSg SINE Alu 1 297 -13 907 216 11 6 chr11 79311263 79311439 -69472033 - MER5B DNA MER1_type 0 178 2 584 302 7 7 chr11 79311453 79311602 -69471870 - MER5A DNA MER1_type -6 183 35 338 241 45 18 chr11 79311634 79311746 -69471726 - L1M4 LINE L1 -1576 4570 4456 211 211 0 0 chr11 79311756 79311794 -69471678 + (CATATA)n Simple_repeat Simple_repeat 1 38 0 388 302 56 22 chr11 79311795 79312027 -69471445 - L1M4 LINE L1 -1110 5036 4797 1757 271 94 37 chr11 79312135 79313292 -69470180 - L1M4 LINE L1 -1821 4325 3103 937 358 89 20 chr11 79313303 79314055 -69469417 - L2 LINE L2 -495 2819 2016 2162 82 0 0 chr11 79314661 79314929 -69468543 - AluSx SINE Alu -44 268 1 294 310 95 84 chr11 79315029 79315303 -69468169 - L2 LINE L2 0 3272 2996 1232 192 94 0 chr11 79315838 79316104 -69467368 + L1ME3 LINE L1 5521 5811 -359 2110 183 132 20 chr11 79316107 79316561 -69466911 + MLT1D LTR MaLR 1 505 0 785 163 10 134 chr11 79316573 79316719 -69466753 - MER20 DNA MER1_type -29 190 74 2520 60 3 3 chr11 79316719 79317019 -69466453 + AluY SINE Alu 1 300 -11 785 163 10 134 chr11 79317019 79317074 -69466398 - MER20 DNA MER1_type -145 74 14 1045 194 75 32 chr11 79317079 79317331 -69466141 + L1ME3 LINE L1 5899 6161 -1 305 300 194 12 chr11 79318115 79318330 -69465142 - MIR SINE MIR -12 250 12 212 176 0 0 chr11 79318662 79318696 -69464776 + MER5B DNA MER1_type 7 40 -138 318 276 165 24 chr11 79319253 79319423 -69464049 + MIR SINE MIR 48 241 -21 241 328 99 72 chr11 79319485 79319778 -69463694 - L2 LINE L2 0 3272 2972 380 283 51 29 chr11 79319902 79320040 -69463432 + MIR SINE MIR 47 187 -75 360 281 0 42 chr11 79320064 79320160 -69463312 + L2 LINE L2 3222 3313 0 286 200 0 71 chr11 79320152 79320222 -69463250 + MIR SINE MIR 186 250 -12 * 2250 110 13 3 chr11 79321265 79321574 -69461898 - AluSx SINE Alu 0 312 1 218 276 32 128 chr11 79321596 79321752 -69461720 - L2 LINE L2 -188 3084 2944 2062 158 49 0 chr11 79321868 79322236 -69461236 - MER58D DNA MER1_type 0 386 1 295 313 0 0 chr11 79322921 79323001 -69460471 - L2 LINE L2 0 3313 3234 180 77 0 0 chr11 79323092 79323118 -69460354 + (ATG)n Simple_repeat Simple_repeat 1 26 0 463 304 29 0 chr11 79323312 79323453 -69460019 + MIR SINE MIR 28 172 -58 230 222 167 19 chr11 79323849 79323957 -69459515 + MIR3 SINE MIR 62 185 -23 2159 99 0 7 chr11 79324291 79324599 -69458873 + AluSg SINE Alu 1 306 0 1271 283 113 35 chr11 79324793 79325598 -69457874 - L1MC4a LINE L1 -748 5398 4940 1797 173 0 19 chr11 79325598 79325916 -69457556 - AluJb SINE Alu 0 312 1 1271 283 113 35 chr11 79325916 79326630 -69456842 - L1MC4a LINE L1 -1206 4940 4283 1751 121 90 33 chr11 79326636 79327127 -69456345 + MER51A LTR ERV1 27 634 0 818 293 67 41 chr11 79327133 79327863 -69455609 + L1M4 LINE L1 2304 3052 -3094 1172 160 0 0 chr11 79327894 79328069 -69455403 + FAM SINE Alu 1 47 -2 433 299 78 42 chr11 79328073 79328357 -69455115 + L1M4 LINE L1 3090 3383 -2763 383 216 0 0 chr11 79328365 79328439 -69455033 + MLT1F LTR MaLR 3 76 -466 3457 170 15 46 chr11 79328449 79329009 -69454463 - L1MC1 LINE L1 -454 5879 5344 1044 148 37 12 chr11 79329009 79329171 -69454301 - FRAM SINE Alu 0 166 1 3457 170 15 46 chr11 79329171 79329428 -69454044 - L1MC1 LINE L1 -989 5344 5080 838 156 0 0 chr11 79329438 79329560 -69453912 + FLAM_C SINE Alu 9 130 -13 1082 218 8 0 chr11 79329596 79329830 -69453642 - L1MC1 LINE L1 -1068 5078 4843 1879 140 90 23 chr11 79329830 79330089 -69453383 - MER47A DNA MER2_type -1957 366 77 1910 120 86 46 chr11 79330089 79330415 -69453057 + MER44D DNA MER2_type 1 609 0 1879 140 90 23 chr11 79330415 79330498 -69452974 - MER47A DNA MER2_type -2246 77 1 479 250 39 0 chr11 79330498 79330626 -69452846 - L1MC1 LINE L1 -1302 4844 4712 6760 157 183 28 chr11 79330627 79331914 -69451558 - MER52A LTR ERV1 0 1755 195 2060 93 3 31 chr11 79331914 79332257 -69451215 - AluSx SINE Alu 0 335 1 6760 157 183 28 chr11 79332257 79332488 -69450984 - MER52A LTR ERV1 -1560 195 1 609 226 7 0 chr11 79332489 79332635 -69450837 - L1MC1 LINE L1 -1433 4713 4567 1052 284 85 50 chr11 79332694 79333329 -69450143 + L1M4 LINE L1 3411 4067 -2079 1758 218 24 32 chr11 79333679 79334056 -69449416 + MLT1A2 LTR MaLR 1 374 0 262 230 81 46 chr11 79334125 79334212 -69449260 - L3 LINE CR1 -299 1278 1189 924 171 184 16 chr11 79334245 79334476 -69448996 - L1MC4 LINE L1 -758 7284 7008 2108 73 0 4 chr11 79334476 79334761 -69448711 - AluY SINE Alu 0 311 34 924 171 184 16 chr11 79334761 79334774 -69448698 - L1MC4 LINE L1 -1034 7008 6999 26517 155 17 19 chr11 79334775 79341245 -69442227 - L1PA10 LINE L1 0 6483 10 282 133 22 0 chr11 79341264 79341309 -69442163 - L1MC4 LINE L1 -1039 7003 6958 1212 260 62 62 chr11 79341544 79342459 -69441013 - L1ME3A LINE L1 -284 5886 4962 225 242 152 0 chr11 79342553 79342619 -69440853 + MLT1L LTR MaLR 196 271 -344 3557 137 12 0 chr11 79342841 79343345 -69440127 + MER41E LTR ERV1 1 510 -2 225 333 7 7 chr11 79343601 79343739 -69439733 - L1ME3A LINE L1 -1220 4926 4789 2132 122 3 3 chr11 79343829 79344141 -69439331 - AluSx SINE Alu 0 312 1 305 172 31 0 chr11 79344162 79344226 -69439246 - L2 LINE L2 0 3313 3248 291 265 53 41 chr11 79344306 79344476 -69438996 - L1ME3A LINE L1 -1478 4668 4497 3256 231 42 36 chr11 79344515 79344743 -69438729 - L1MD2 LINE L1 -10 6349 6124 2323 73 35 0 chr11 79344743 79345032 -69438440 - AluSg SINE Alu -11 299 1 3256 231 42 36 chr11 79345032 79345270 -69438202 - L1MD2 LINE L1 -235 6124 5595 637 273 39 44 chr11 79345270 79345721 -69437751 - L1PA15 LINE L1 -285 5880 5428 2114 119 16 13 chr11 79345721 79346032 -69437440 - L1PA16 LINE L1 0 6166 5855 637 273 39 44 chr11 79346032 79346136 -69437336 - L1PA15 LINE L1 -737 5428 4921 9694 175 12 30 chr11 79346179 79346211 -69437261 - L1PA16 LINE L1 -311 5855 5824 1551 138 55 28 chr11 79346211 79346502 -69436970 - AluJb SINE Alu -13 299 1 9694 175 12 30 chr11 79346502 79348575 -69434897 - L1PA16 LINE L1 -342 5824 3804 2428 90 0 0 chr11 79348575 79348874 -69434598 - AluSq SINE Alu -14 299 1 9694 175 12 30 chr11 79348874 79349462 -69434010 - L1PA16 LINE L1 -2362 3804 3207 316 141 31 0 chr11 79349474 79349538 -69433934 - L1MC/D LINE L1 -921 5438 5373 798 153 0 53 chr11 79349546 79349696 -69433776 - FLAM_C SINE Alu 0 143 2 254 293 0 0 chr11 79349945 79350003 -69433469 - L1M4 LINE L1 -2066 4080 4023 573 311 57 54 chr11 79350131 79350326 -69433146 - L1M4 LINE L1 -2306 3840 3642 1729 189 3 3 chr11 79350326 79350622 -69432850 - AluJb SINE Alu -16 296 1 573 311 57 54 chr11 79350622 79350776 -69432696 - L1M4 LINE L1 -2504 3642 3490 805 286 59 40 chr11 79350785 79351344 -69432128 + L2 LINE L2 2714 3281 -32 253 328 46 8 chr11 79351489 79351620 -69431852 - L2 LINE L2 -953 2361 2226 234 329 0 0 chr11 79351642 79351718 -69431754 + (TCCA)n Simple_repeat Simple_repeat 2 77 0 2279 102 3 0 chr11 79352043 79352336 -69431136 - AluSg SINE Alu -16 294 1 521 317 31 19 chr11 79352356 79352517 -69430955 + MIR SINE MIR 20 182 -80 183 186 0 0 chr11 79352562 79352605 -69430867 + (TGG)n Simple_repeat Simple_repeat 2 44 0 372 325 66 7 chr11 79353461 79353612 -69429860 - MIR SINE MIR -62 146 29 365 360 49 21 chr11 79354734 79355123 -69428349 - L2 LINE L2 -623 2691 2292 267 0 0 0 chr11 79355433 79355464 -69428008 + AluS SINE Alu 66 96 -207 1649 238 74 8 chr11 79355629 79356103 -69427369 - MLT1D LTR MaLR 0 505 1 2102 106 3 7 chr11 79356208 79356500 -69426972 - AluSg SINE Alu -19 291 1 336 164 27 14 chr11 79356599 79356672 -69426800 + MER103 DNA DNA 13 86 -80 237 263 50 0 chr11 79356788 79356868 -69426604 + L3 LINE CR1 1200 1283 -294 241 346 0 0 chr11 79356907 79356988 -69426484 - L2 LINE L2 -54 3259 3179 982 101 31 0 chr11 79357065 79357194 -69426278 + AluSq/x SINE Alu 1 133 -180 1913 143 10 20 chr11 79357804 79358105 -69425367 - AluJo SINE Alu -14 298 1 628 183 42 0 chr11 79358273 79358393 -69425079 + MIR SINE MIR 21 145 -117 315 330 32 33 chr11 79360414 79360604 -69422868 - MIR3 SINE MIR -52 156 4 225 65 0 0 chr11 79360797 79360828 -69422644 + (CCTCG)n Simple_repeat Simple_repeat 5 35 0 1497 236 52 5 chr11 79360992 79361437 -69422035 - Charlie4a DNA MER1_type 0 508 43 268 267 168 17 chr11 79361444 79361599 -69421873 - MIR SINE MIR -19 189 2 234 150 0 0 chr11 79362878 79362918 -69420554 + (A)n Simple_repeat Simple_repeat 1 40 0 837 213 51 20 chr11 79363509 79363762 -69419710 - MLT1H LTR MaLR -286 263 3 213 395 31 0 chr11 79363891 79364020 -69419452 + L2 LINE L2 2639 2771 -543 531 305 45 0 chr11 79364230 79364430 -69419042 - LTR33 LTR ERVL -301 220 12 270 318 106 42 chr11 79364488 79364771 -69418701 + L2 LINE L2 2811 3111 -161 196 308 110 75 chr11 79364905 79365427 -69418045 + L2 LINE L2 2738 3272 0 1632 218 111 24 chr11 79365521 79366017 -69417455 - MLT1F LTR MaLR -3 539 1 337 256 64 70 chr11 79366347 79366519 -69416953 + MLT1J2 LTR MaLR 277 447 -3 271 289 145 0 chr11 79367135 79367218 -69416254 - L2 LINE L2 -9 3263 3169 243 281 0 0 chr11 79367415 79367472 -69416000 - MIR SINE MIR -12 250 194 286 254 0 0 chr11 79367672 79367735 -69415737 + MIR SINE MIR 78 140 -68 2350 79 3 7 chr11 79368015 79368305 -69415167 - AluSg SINE Alu -20 290 2 2346 86 3 10 chr11 79368400 79368703 -69414769 - AluSp SINE Alu -12 301 1 977 229 96 27 chr11 79368770 79369071 -69414401 - MER5C DNA MER1_type 0 324 3 349 269 124 28 chr11 79369182 79369327 -69414145 - MIR3 SINE MIR -39 169 11 503 292 21 0 chr11 79369532 79369676 -69413796 + LTR16A LTR ERVL 304 450 0 379 318 28 0 chr11 79369708 79369815 -69413657 - MIR SINE MIR -141 121 12 8786 191 62 29 chr11 79369892 79370449 -69413023 + L1MC3 LINE L1 5523 6060 -1725 2244 96 0 30 chr11 79370449 79370750 -69412722 + AluSq SINE Alu 1 292 -21 8786 191 62 29 chr11 79370750 79371358 -69412114 + L1MC3 LINE L1 6060 6647 -1138 2156 131 10 6 chr11 79371358 79371670 -69411802 + AluSq SINE Alu 1 313 0 8786 191 62 29 chr11 79371670 79372688 -69410784 + L1MC3 LINE L1 6647 7778 -7 2067 193 29 60 chr11 79372717 79373236 -69410236 - MLT1D LTR MaLR -2 503 1 258 128 21 21 chr11 79373241 79373288 -69410184 + MIR SINE MIR 93 139 -69 358 307 0 0 chr11 79373473 79373561 -69409911 + MIR SINE MIR 30 117 -91 1205 194 23 27 chr11 79373878 79374090 -69409382 + MER58D DNA MER1_type 40 251 -2169 2183 157 3 0 chr11 79374090 79374409 -69409063 + 7SLRNA srpRNA srpRNA 1 320 0 1976 138 0 10 chr11 79374411 79374723 -69408749 + AluSx SINE Alu 1 309 0 1205 194 23 27 chr11 79374723 79374806 -69408666 + MER58D DNA MER1_type 252 338 -48 527 283 161 45 chr11 79374864 79375275 -69408197 + L2 LINE L2 2667 3133 -139 2011 135 3 25 chr11 79375275 79375593 -69407879 - AluSp SINE Alu -2 311 1 527 283 161 45 chr11 79375593 79375682 -69407790 + L2 LINE L2 3133 3210 -62 569 266 92 5 chr11 79376781 79376999 -69406473 + LTR16A1 LTR ERVL 221 457 0 189 74 0 0 chr11 79377318 79377345 -69406127 + (GA)n Simple_repeat Simple_repeat 2 28 0 261 327 87 29 chr11 79377481 79377585 -69405887 + MIR SINE MIR 17 126 -82 599 253 25 6 chr11 79377790 79377952 -69405520 + MIR SINE MIR 98 262 0 984 170 40 20 chr11 79378441 79378641 -69404831 - L1MB3 LINE L1 0 6183 5980 205 233 194 19 chr11 79378832 79378935 -69404537 - L2 LINE L2 -4 3268 3148 2610 145 20 43 chr11 79379119 79379388 -69404084 + L1M4 LINE L1 5126 5400 -784 1685 182 7 29 chr11 79379388 79379696 -69403776 + AluJb SINE Alu 1 301 -11 2610 145 20 43 chr11 79379696 79379913 -69403559 + L1M4 LINE L1 5400 5596 -588 2576 64 0 10 chr11 79379913 79380227 -69403245 + AluY SINE Alu 1 311 0 2610 145 20 43 chr11 79380227 79380404 -69403068 + L1M4 LINE L1 5596 5776 -408 234 105 0 0 chr11 79380408 79380446 -69403026 + MADE1 DNA Mariner 1 38 -42 268 167 0 0 chr11 79380448 79380496 -69402976 + L1M4 LINE L1 5785 5832 -352 686 48 0 0 chr11 79380496 79380579 -69402893 + AluSc SINE Alu 2 84 -225 26111 93 40 5 chr11 79380579 79384480 -69398992 + L1P LINE L1 4 4042 -2104 2365 107 7 0 chr11 79384698 79385008 -69398464 - AluSx SINE Alu 0 312 1 567 262 87 12 chr11 79385405 79385577 -69397895 + MIR SINE MIR 47 231 -31 2438 93 0 19 chr11 79385592 79385904 -69397568 + AluSg SINE Alu 1 306 -4 598 266 27 77 chr11 79385934 79386068 -69397404 + MIR SINE MIR 37 157 -105 2206 108 14 0 chr11 79386068 79386356 -69397116 + AluSq SINE Alu 1 292 -21 598 266 27 77 chr11 79386356 79386443 -69397029 + MIR SINE MIR 157 247 -15 258 289 97 0 chr11 79386476 79386590 -69396882 + L2 LINE L2 3126 3250 -63 329 276 82 29 chr11 79386954 79387124 -69396348 + MIR3 SINE MIR 15 193 -15 280 240 94 31 chr11 79388229 79388325 -69395147 + MIR SINE MIR 37 138 -70 265 258 50 82 chr11 79388376 79388520 -69394952 + MIR SINE MIR 47 180 -65 2342 76 31 0 chr11 79388653 79388944 -69394528 + AluSx SINE Alu 1 300 -12 1500 184 81 3 chr11 79388952 79389262 -69394210 - MER2 DNA MER2_type -8 337 4 1822 145 33 11 chr11 79390059 79390369 -69393103 - AluSx SINE Alu 0 316 1 825 310 29 24 chr11 79390426 79390807 -69392665 + L1MC4a LINE L1 5521 5903 -1905 1137 90 14 0 chr11 79390968 79391112 -69392360 - AluSg/x SINE Alu -18 294 149 235 319 115 7 chr11 79391515 79391659 -69391813 + MIR SINE MIR 37 196 -66 293 213 40 0 chr11 79391875 79391950 -69391522 - L1MB7 LINE L1 -24 6160 6083 755 142 278 12 chr11 79391955 79392124 -69391348 + AluJo SINE Alu 6 219 -93 1329 93 66 0 chr11 79392386 79392569 -69390903 + AluSq SINE Alu 1 195 -118 886 275 53 44 chr11 79392669 79393029 -69390443 - L2 LINE L2 -817 2497 2135 249 250 83 12 chr11 79393097 79393181 -69390291 + MIR SINE MIR 81 170 -92 266 376 26 8 chr11 79393670 79393787 -69389685 + MIR3 SINE MIR 3 121 -87 204 290 16 0 chr11 79394108 79394170 -69389302 - MIR SINE MIR -87 121 59 408 88 0 44 chr11 79394480 79394548 -69388924 + SVA Other Other 789 853 -533 37 0 0 0 chr11 79394722 79394759 -69388713 + AT_rich Low_complexity Low_complexity 1 37 0 243 114 0 0 chr11 79394838 79394882 -69388590 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 1004 226 104 48 chr11 79394921 79395174 -69388298 + L1ME LINE L1 4001 4275 -1871 3543 106 24 4 chr11 79395174 79395675 -69387797 - MER9 LTR ERVK 0 511 1 1004 226 104 48 chr11 79395675 79395730 -69387742 + L1ME LINE L1 4275 4326 -1820 755 319 94 34 chr11 79395837 79395931 -69387541 - L1M4 LINE L1 -1448 4698 4611 2232 107 0 3 chr11 79395931 79396222 -69387250 + AluSg SINE Alu 1 290 -20 755 319 94 34 chr11 79396222 79396793 -69386679 - L1M4 LINE L1 -1535 4611 4076 1835 72 5 0 chr11 79396793 79397015 -69386457 + AluSg/x SINE Alu 72 294 -18 755 319 94 34 chr11 79397015 79397936 -69385536 - L1M4 LINE L1 -2070 4076 3015 246 80 60 0 chr11 79398081 79398131 -69385341 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 5160 195 43 12 chr11 79398208 79399734 -69383738 + HERVL74 LTR ERVL 1693 3340 -2345 825 169 12 30 chr11 79399715 79399881 -69383591 + HERVL74 LTR ERVL 3479 3641 -2044 * 635 196 26 33 chr11 79399888 79400041 -69383431 + HERVL74 LTR ERVL 3922 4073 -1612 484 273 52 101 chr11 79400029 79400396 -69383076 + HERVL74 LTR ERVL 4586 4934 -751 * 2433 201 56 65 chr11 79400776 79401458 -69382014 - MER54B LTR ERVL -115 678 3 507 272 127 50 chr11 79401458 79401848 -69381624 + L1ME LINE L1 4765 5124 -1038 2191 123 3 0 chr11 79401848 79402148 -69381324 + AluSx SINE Alu 1 301 -11 507 272 127 50 chr11 79402148 79402341 -69381131 + L1ME LINE L1 5124 5301 -861 2336 96 0 0 chr11 79402341 79402634 -69380838 + AluSx SINE Alu 1 293 -19 507 272 127 50 chr11 79402634 79402862 -69380610 + L1ME LINE L1 5301 5639 -523 1030 249 145 4 chr11 79402992 79403675 -69379797 + L1ME2 LINE L1 5320 6167 -3 1650 263 118 46 chr11 79403697 79404662 -69378810 - L2 LINE L2 -791 2523 1489 207 0 0 0 chr11 79404809 79404832 -69378640 + (GGCTG)n Simple_repeat Simple_repeat 4 26 0 298 274 112 51 chr11 79405495 79405692 -69377780 + MIR SINE MIR 22 230 -32 231 36 0 0 chr11 79406013 79406041 -69377431 + (TC)n Simple_repeat Simple_repeat 1 28 0 269 290 11 11 chr11 79407578 79407671 -69375801 - MIR3 SINE MIR -40 168 76 203 328 107 15 chr11 79407706 79407837 -69375635 + MIR3 SINE MIR 3 145 -63 686 241 76 34 chr11 79408145 79408342 -69375130 + MIR SINE MIR 16 226 -36 2335 108 0 0 chr11 79408342 79408639 -69374833 - AluSx SINE Alu -15 297 1 686 241 76 34 chr11 79408639 79408678 -69374794 + MIR SINE MIR 226 262 0 223 286 57 69 chr11 79410545 79410720 -69372752 + L2 LINE L2 2436 2608 -706 657 266 141 19 chr11 79410774 79411030 -69372442 + LTR33 LTR ERVL 235 521 0 236 293 138 0 chr11 79411091 79411207 -69372265 + L2 LINE L2 2690 2821 -493 421 275 164 21 chr11 79411652 79411871 -69371601 + MIR SINE MIR 17 256 -6 2275 81 23 26 chr11 79412773 79413082 -69370390 - AluY SINE Alu -3 308 1 451 262 134 20 chr11 79413089 79413427 -69370045 + L2 LINE L2 2694 3060 -212 219 256 94 88 chr11 79413886 79414046 -69369426 - MIR SINE MIR -56 206 46 309 266 53 18 chr11 79414293 79414406 -69369066 + L2 LINE L2 2880 2996 -276 496 225 40 26 chr11 79415161 79415312 -69368160 - MIR SINE MIR -2 260 108 181 271 188 38 chr11 79415471 79415604 -69367868 + L2 LINE L2 3115 3267 -5 22 35 0 0 chr11 79416025 79416054 -69367418 + GC_rich Low_complexity Low_complexity 1 29 0 306 315 85 24 chr11 79417315 79417480 -69365992 - L1ME4a LINE L1 -175 5946 5772 268 294 157 0 chr11 79418242 79418344 -69365128 + L3 LINE CR1 1421 1538 -39 182 356 68 34 chr11 79418643 79418820 -69364652 + L3 LINE CR1 1290 1472 -105 304 231 185 23 chr11 79419136 79419266 -69364206 - MIR3 SINE MIR -48 160 10 693 300 123 60 chr11 79419511 79419904 -69363568 + L2 LINE L2 2776 3206 -107 2197 131 0 6 chr11 79419904 79420218 -69363254 + AluSx SINE Alu 1 312 0 693 300 123 60 chr11 79420218 79420334 -69363138 + L2 LINE L2 3206 3313 0 297 319 112 50 chr11 79420917 79421158 -69362314 - L2 LINE L2 -85 3187 2932 314 225 54 45 chr11 79421434 79421545 -69361927 + MIR SINE MIR 34 145 -63 341 286 24 16 chr11 79421675 79421801 -69361671 + MIR3 SINE MIR 60 186 -22 188 274 24 24 chr11 79421815 79421899 -69361573 + MIR SINE MIR 60 143 -65 323 266 75 0 chr11 79423454 79423548 -69359924 - L2 LINE L2 0 3272 3172 282 321 18 18 chr11 79424489 79424601 -69358871 - MIR SINE MIR -132 130 19 453 251 165 18 chr11 79424662 79424865 -69358607 - MIR SINE MIR -5 257 22 213 325 32 16 chr11 79425026 79425152 -69358320 + L2 LINE L2 3076 3203 -110 254 244 26 13 chr11 79425210 79425288 -69358184 + L2 LINE L2 3212 3290 -23 2411 69 0 0 chr11 79425751 79426041 -69357431 + AluY SINE Alu 1 290 -21 264 228 18 0 chr11 79426237 79426294 -69357178 + MER63 DNA MER1_type 464 521 -539 2478 64 0 0 chr11 79426395 79426690 -69356782 + AluY SINE Alu 9 303 -8 468 240 66 8 chr11 79426690 79426811 -69356661 - MIR SINE MIR -74 188 61 311 234 80 80 chr11 79427177 79427314 -69356158 + MIR3 SINE MIR 5 141 -67 456 160 84 59 chr11 79428270 79428389 -69355083 - MIR3 SINE MIR -41 167 46 204 274 131 13 chr11 79428783 79428936 -69354536 - L2 LINE L2 -26 3246 3076 353 278 26 43 chr11 79428966 79429081 -69354391 - MLT1K LTR MaLR -198 390 278 550 190 261 0 chr11 79430074 79430216 -69353256 - MER5A DNA MER1_type -2 187 9 399 313 27 0 chr11 79430651 79430801 -69352671 + MIR3 SINE MIR 37 190 -18 183 268 179 0 chr11 79431032 79431088 -69352384 - MIR SINE MIR -161 101 36 377 354 72 9 chr11 79432126 79432349 -69351123 - MIR SINE MIR -6 256 20 344 217 12 12 chr11 79432786 79432869 -69350603 - MIR SINE MIR -99 163 81 536 304 62 0 chr11 79432982 79433176 -69350296 + MIR SINE MIR 45 250 -12 186 376 12 12 chr11 79433667 79433752 -69349720 - MIR SINE MIR -121 141 57 487 232 149 3 chr11 79434034 79434198 -69349274 - L1MB5 LINE L1 -32 6152 5972 803 125 7 7 chr11 79434226 79434370 -69349102 + L1MB8 LINE L1 6035 6178 0 1339 258 147 46 chr11 79434381 79434662 -69348810 + L1MCc LINE L1 1052 1303 -5819 2150 86 54 0 chr11 79434662 79434941 -69348531 + AluSq SINE Alu 1 294 -19 1339 258 147 46 chr11 79434941 79435174 -69348298 + L1MCc LINE L1 1303 1511 -5611 1083 126 6 33 chr11 79435174 79435357 -69348115 + L1PA8A LINE L1 5952 6129 -2 1339 258 147 46 chr11 79435357 79435976 -69347496 + L1MCc LINE L1 1511 2524 -4598 854 207 128 6 chr11 79435973 79435987 -69347485 + L1MCc LINE L1 3822 3833 -3108 * 2014 118 24 10 chr11 79435987 79436345 -69347127 + AluSx SINE Alu 1 312 0 854 207 128 6 chr11 79436345 79436659 -69346813 + L1MCc LINE L1 3833 4190 -2751 192 40 0 0 chr11 79437019 79437044 -69346428 + (TC)n Simple_repeat Simple_repeat 1 25 0 226 339 152 6 chr11 79437105 79437276 -69346196 + MIR SINE MIR 23 218 -44 308 257 10 59 chr11 79437366 79437467 -69346005 + L2 LINE L2 3160 3255 -17 270 81 0 0 chr11 79437471 79437508 -69345964 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 1729 110 80 34 chr11 79437753 79438016 -69345456 + AluSx SINE Alu 11 285 -27 207 0 0 0 chr11 79438140 79438163 -69345309 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1075 219 9 9 chr11 79439417 79439645 -69343827 + MIR SINE MIR 21 248 -14 898 147 7 7 chr11 79439879 79440029 -69343443 + MER5A DNA MER1_type 1 150 -39 253 246 66 0 chr11 79440615 79440676 -69342796 - MIR SINE MIR -13 249 185 1592 173 10 38 chr11 79440677 79440966 -69342506 - AluJo SINE Alu -27 285 5 337 224 84 37 chr11 79440971 79441078 -69342394 - MIR SINE MIR -52 210 99 2248 84 14 17 chr11 79441493 79441790 -69341682 + AluY SINE Alu 1 296 -15 267 223 85 11 chr11 79441795 79441889 -69341583 + L1MB8 LINE L1 5823 5923 -261 * 487 232 149 3 chr11 79441867 79442031 -69341441 - L1MB5 LINE L1 -32 6152 5972 803 125 7 7 chr11 79442059 79442203 -69341269 + L1MB8 LINE L1 6035 6178 0 497 212 168 0 chr11 79442214 79442351 -69341121 + L1MCc LINE L1 1052 1211 -5212 922 158 43 5 chr11 79443017 79443201 -69340271 - L1MB3 LINE L1 0 6183 5993 2611 145 20 43 chr11 79443695 79443964 -69339508 + L1M4 LINE L1 5126 5400 -784 1616 180 13 29 chr11 79443964 79444270 -69339202 + AluJb SINE Alu 1 301 -11 2611 145 20 43 chr11 79444270 79444487 -69338985 + L1M4 LINE L1 5400 5596 -588 2588 64 0 10 chr11 79444487 79444801 -69338671 + AluY SINE Alu 1 311 0 2611 145 20 43 chr11 79444801 79444978 -69338494 + L1M4 LINE L1 5596 5776 -408 234 105 0 0 chr11 79444982 79445020 -69338452 + MADE1 DNA Mariner 1 38 -42 269 167 0 0 chr11 79445022 79445070 -69338402 + L1M4 LINE L1 5785 5832 -352 644 48 0 0 chr11 79445070 79445153 -69338319 + AluSc SINE Alu 2 84 -225 41467 37 23 1 chr11 79445153 79450814 -69332658 + L1P1 LINE L1 4 5788 -367 377 285 80 0 chr11 79450915 79451052 -69332420 + L2 LINE L2 2500 2647 -667 1939 142 0 4 chr11 79451068 79451349 -69332123 - AluSx SINE Alu -32 280 1 338 250 0 0 chr11 79451366 79451442 -69332030 - L2 LINE L2 0 3313 3238 332 270 33 73 chr11 79451575 79451821 -69331651 + L2 LINE L2 2785 3020 -252 1215 124 0 0 chr11 79451821 79452002 -69331470 - AluSg/x SINE Alu 0 301 121 5987 50 23 19 chr11 79652324 79653056 -69130416 - SVA Other Other -2 1384 650 1091 199 0 5 chr11 79653157 79653363 -69130109 + AluSg/x SINE Alu 106 310 0 23 0 0 0 chr11 79653370 79653393 -69130079 + AT_rich Low_complexity Low_complexity 1 23 0 275 308 42 14 chr11 79653483 79653626 -69129846 + MIR SINE MIR 2 148 -114 663 103 0 0 chr11 79655197 79655294 -69128178 + AluSp/q SINE Alu 210 306 -7 237 119 0 0 chr11 79655299 79655341 -69128131 + (TA)n Simple_repeat Simple_repeat 2 43 0 2139 106 51 0 chr11 79655365 79655657 -69127815 - AluSq SINE Alu -6 307 1 367 287 105 49 chr11 79655746 79656576 -69126896 + L1MC4a LINE L1 4102 4977 -1169 35 71 0 0 chr11 79656614 79656684 -69126788 + AT_rich Low_complexity Low_complexity 1 70 0 381 275 40 107 chr11 79656849 79657448 -69126024 + L1MC4a LINE L1 5263 5827 -1981 29 28 0 0 chr11 79657497 79657533 -69125939 + AT_rich Low_complexity Low_complexity 1 36 0 194 215 0 15 chr11 79657845 79657910 -69125562 + (TATATG)n Simple_repeat Simple_repeat 5 68 0 2378 97 0 6 chr11 79657998 79658309 -69125163 + AluSc SINE Alu 1 309 0 23 0 0 0 chr11 79658316 79658339 -69125133 + AT_rich Low_complexity Low_complexity 1 23 0 1386 64 0 70 chr11 79658495 79658682 -69124790 - AluY SINE Alu -137 174 1 535 252 30 0 chr11 79658745 79658880 -69124592 + MIR SINE MIR 15 153 -109 266 363 47 19 chr11 79658980 79659300 -69124172 - L2 LINE L2 -832 2482 2154 2063 213 64 81 chr11 79659499 79660202 -69123270 + LTR8 LTR ERV1 1 691 0 530 298 32 44 chr11 79660349 79660601 -69122871 - MIR SINE MIR -6 256 8 2228 135 0 0 chr11 79661500 79661804 -69121668 - AluSx SINE Alu -7 305 2 1911 142 16 26 chr11 79662048 79662351 -69121121 - AluJb SINE Alu -10 302 3 180 77 0 0 chr11 79662668 79662694 -69120778 + (CAA)n Simple_repeat Simple_repeat 3 28 0 596 332 58 23 chr11 79663364 79663737 -69119735 + L2 LINE L2 2684 3070 -243 542 186 142 65 chr11 79663869 79664116 -69119356 + L1MC5 LINE L1 7269 7534 -427 400 210 91 48 chr11 79664099 79664593 -69118879 + L1ME2 LINE L1 5505 6120 -44 * 2478 69 0 0 chr11 79664593 79664884 -69118588 + AluY SINE Alu 1 291 -20 400 210 91 48 chr11 79664884 79664921 -69118551 + L1ME2 LINE L1 6120 6154 -10 316 228 58 107 chr11 79664965 79665189 -69118283 + L1MC4 LINE L1 7829 8041 -1 1761 172 0 0 chr11 79665259 79665520 -69117952 + AluJb SINE Alu 6 266 -46 445 231 62 31 chr11 79665720 79665850 -69117622 - L2 LINE L2 0 3313 3180 1747 223 134 14 chr11 79665859 79666429 -69117043 - L2 LINE L2 -261 3052 2413 377 319 111 69 chr11 79666456 79666613 -69116859 - L2 LINE L2 -414 2900 2751 2301 88 7 3 chr11 79666613 79666910 -69116562 - AluSg SINE Alu -12 298 1 377 319 111 69 chr11 79666910 79667248 -69116224 - L2 LINE L2 -563 2751 2429 315 0 0 0 chr11 79667256 79667291 -69116181 + (TG)n Simple_repeat Simple_repeat 2 36 0 2143 123 3 0 chr11 79667291 79667575 -69115897 - AluSx SINE Alu -24 288 1 377 319 111 69 chr11 79667575 79668128 -69115344 - L2 LINE L2 -885 2429 1806 366 282 122 15 chr11 79668340 79668471 -69115001 - L2 LINE L2 -1 3271 3127 262 287 86 61 chr11 79668502 79668682 -69114790 - L2 LINE L2 -335 2978 2796 22 35 0 0 chr11 79669577 79669606 -69113866 + AT_rich Low_complexity Low_complexity 1 29 0 206 328 104 0 chr11 79669698 79669823 -69113649 + MIR SINE MIR 65 202 -60 679 253 127 54 chr11 79671368 79671700 -69111772 - LTR18A LTR ERVL -1 356 1 224 294 118 0 chr11 79673325 79673427 -69110045 + L2 LINE L2 2973 3086 -186 3384 237 117 56 chr11 79673623 79675282 -69108190 - HAL1 LINE L1 -5 2502 743 787 262 127 66 chr11 79675384 79675794 -69107678 - HAL1 LINE L1 -1968 539 93 2139 127 3 10 chr11 79675794 79676108 -69107364 - AluSx SINE Alu 0 312 1 787 262 127 66 chr11 79676108 79676185 -69107287 - HAL1 LINE L1 -2414 93 22 783 237 156 16 chr11 79676290 79676663 -69106809 + MLT1J LTR MaLR 1 486 -25 278 204 204 21 chr11 79676689 79676782 -69106690 - MIR SINE MIR -138 124 15 182 286 0 0 chr11 79677176 79677225 -69106247 + L2 LINE L2 3261 3309 -4 22 35 0 0 chr11 79677454 79677483 -69105989 + AT_rich Low_complexity Low_complexity 1 29 0 339 288 117 0 chr11 79677609 79677720 -69105752 - MLT1L LTR MaLR -122 493 370 444 231 132 0 chr11 79677800 79677921 -69105551 - L1ME3A LINE L1 -5 6165 6029 330 286 138 43 chr11 79677951 79678182 -69105290 - MLT1L LTR MaLR -362 253 1 465 306 25 20 chr11 79678281 79678526 -69104946 - L1ME3A LINE L1 -211 5910 5665 185 272 191 37 chr11 79678616 79678752 -69104720 + MIR SINE MIR 84 240 -22 333 248 41 41 chr11 79678836 79678957 -69104515 + MLT2E LTR ERVL 5 126 -502 1081 268 37 28 chr11 79678995 79679451 -69104021 + MLT2E LTR ERVL 132 628 0 1535 130 7 35 chr11 79679743 79680027 -69103445 + AluSc SINE Alu 1 276 -33 189 232 58 14 chr11 79681277 79681346 -69102126 + MIR SINE MIR 108 179 -83 478 265 27 7 chr11 79682162 79682346 -69101126 - MIR SINE MIR -68 140 8 2467 269 81 22 chr11 79682797 79683641 -69099831 + MER69 DNA AcHobo 19 911 -1615 461 278 129 58 chr11 79684490 79684707 -69098765 - L1ME LINE L1 -5054 1016 816 2246 130 0 0 chr11 79684707 79685006 -69098466 + AluSx SINE Alu 1 299 -13 461 278 129 58 chr11 79685006 79685617 -69097855 - L1ME LINE L1 -5254 816 117 284 335 6 49 chr11 79685814 79685978 -69097494 - L1ME LINE L1 -5903 167 11 2160 111 3 7 chr11 79686020 79686318 -69097154 + AluSx SINE Alu 9 305 -7 231 330 0 10 chr11 79686320 79686423 -69097049 + L2 LINE L2 2708 2809 -505 379 246 71 16 chr11 79689007 79689133 -69094339 + MIR3 SINE MIR 11 143 -65 188 293 75 43 chr11 79689347 79689535 -69093937 - L2 LINE L2 -215 3057 2864 1214 217 77 26 chr11 79689627 79690042 -69093430 - L1MC5 LINE L1 -196 7765 7330 1209 219 52 3 chr11 79690076 79690364 -69093108 - MER33 DNA MER1_type -22 302 1 724 222 74 45 chr11 79690365 79690676 -69092796 - L1MC5 LINE L1 -627 7334 7015 216 299 153 30 chr11 79691069 79691370 -69092102 + L2 LINE L2 1570 1907 -1407 316 295 18 0 chr11 79691670 79691782 -69091690 + L2 LINE L2 3138 3251 -21 2407 46 3 30 chr11 79693111 79693415 -69090057 - AluY SINE Alu -15 296 1 274 275 33 0 chr11 79693930 79694021 -69089451 - MIR SINE MIR -62 146 53 2406 96 0 0 chr11 79694685 79694988 -69088484 - AluSx SINE Alu -6 306 4 240 256 74 50 chr11 79695161 79695282 -69088190 - MIR SINE MIR -51 211 88 2499 137 30 44 chr11 79695617 79695853 -69087619 - MSTB LTR MaLR 0 426 197 1689 105 4 0 chr11 79695853 79696082 -69087390 - AluY SINE Alu -5 306 77 2499 137 30 44 chr11 79696082 79696276 -69087196 - MSTB LTR MaLR -229 197 2 185 235 49 78 chr11 79696554 79696656 -69086816 + L2 LINE L2 2853 2951 -321 21 0 0 0 chr11 79697165 79697186 -69086286 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 79699538 79699559 -69083913 + AT_rich Low_complexity Low_complexity 1 21 0 393 362 38 5 chr11 79700748 79700958 -69082514 + L3 LINE CR1 1056 1272 -305 354 45 0 0 chr11 79701144 79701188 -69082284 + (GA)n Simple_repeat Simple_repeat 1 44 0 21 0 0 0 chr11 79701298 79701319 -69082153 + AT_rich Low_complexity Low_complexity 1 21 0 236 253 46 0 chr11 79701768 79701855 -69081617 - MIR SINE MIR -127 135 45 189 298 122 15 chr11 79703132 79703263 -69080209 - MIR SINE MIR -21 241 97 26 0 0 0 chr11 79703391 79703417 -69080055 + AT_rich Low_complexity Low_complexity 1 26 0 1773 161 3 30 chr11 79703417 79703715 -69079757 - AluJb SINE Alu -22 290 1 326 271 47 59 chr11 79704417 79704534 -69078938 - L1ME4a LINE L1 -73 6048 5932 1857 160 37 0 chr11 79704534 79704834 -69078638 + AluJo SINE Alu 1 311 -1 326 271 47 59 chr11 79704834 79704886 -69078586 - L1ME4a LINE L1 -189 5932 5881 346 267 53 13 chr11 79704888 79705038 -69078434 - L1ME4a LINE L1 -273 5848 5693 28 29 0 0 chr11 79705060 79705095 -69078377 + AT_rich Low_complexity Low_complexity 1 35 0 234 228 70 0 chr11 79706043 79706100 -69077372 + MIR SINE MIR 16 76 -132 1978 149 36 12 chr11 79706155 79706484 -69076988 - MER1B DNA MER1_type 0 337 1 304 262 87 10 chr11 79706674 79706777 -69076695 - MIR SINE MIR -63 145 35 889 162 18 36 chr11 79706906 79707073 -69076399 + FRAM SINE Alu 1 164 -2 2362 91 3 25 chr11 79707073 79707392 -69076080 + AluSx SINE Alu 1 312 0 296 281 164 8 chr11 79708042 79708170 -69075302 + MIR SINE MIR 102 249 -13 779 241 41 28 chr11 79708191 79708424 -69075048 - MIR SINE MIR -6 256 20 367 317 111 89 chr11 79710900 79711691 -69071781 - L2 LINE L2 -14 3258 2462 385 280 16 0 chr11 79711873 79711998 -69071474 - L2 LINE L2 -1153 2161 2035 856 217 32 44 chr11 79712101 79712350 -69071122 + MIR SINE MIR 12 257 -5 213 39 0 0 chr11 79712481 79712507 -69070965 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 924 141 0 7 chr11 79712548 79712720 -69070752 + FRAM SINE Alu 1 170 0 2141 140 6 6 chr11 79712904 79713239 -69070233 - MER1B DNA MER1_type 0 337 3 2245 112 0 0 chr11 79713363 79713657 -69069815 - AluSq SINE Alu -19 294 1 192 40 0 0 chr11 79713657 79713682 -69069790 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 1977 82 75 14 chr11 79713682 79713963 -69069509 - AluSq SINE Alu -15 298 1 317 374 65 57 chr11 79714142 79714388 -69069084 - L2 LINE L2 -40 3232 2985 232 278 37 9 chr11 79714706 79714814 -69068658 + L1ME LINE L1 5776 5886 -235 1071 142 56 95 chr11 79714822 79715094 -69068378 + MER33 DNA MER1_type 1 259 -2326 2333 62 28 0 chr11 79715094 79715384 -69068088 + AluY SINE Alu 1 298 -13 1071 142 56 95 chr11 79715384 79715448 -69068024 + MER33 DNA MER1_type 259 324 0 688 293 54 5 chr11 79715740 79715962 -69067510 + L3b LINE CR1 1261 1493 -90 2301 79 0 0 chr11 79717271 79717576 -69065896 + AluSg SINE Alu 1 305 0 236 333 0 27 chr11 79717606 79717681 -69065791 - MIR3 SINE MIR -133 75 3 390 317 41 35 chr11 79718233 79718439 -69065033 + MIR3 SINE MIR 3 207 -55 555 307 113 9 chr11 79718783 79719025 -69064447 - MIR SINE MIR -1 261 3 186 322 33 56 chr11 79719030 79719120 -69064352 + L2 LINE L2 2973 3060 -253 415 114 80 0 chr11 79721016 79721104 -69062368 + MER69 DNA AcHobo 2380 2474 -52 1375 296 164 31 chr11 79721254 79722294 -69061178 - L2 LINE L2 -275 2997 1822 660 276 157 56 chr11 79722294 79723114 -69060358 + L1M4 LINE L1 3441 4350 -1796 319 283 85 28 chr11 79723137 79723314 -69060158 + L1M4 LINE L1 4383 4569 -1577 269 304 49 33 chr11 79723837 79724021 -69059451 + L1M4 LINE L1 4752 4938 -1208 211 352 102 9 chr11 79724134 79724242 -69059230 + L2 LINE L2 3143 3260 -12 212 308 165 0 chr11 79725858 79725949 -69057523 + L2 LINE L2 3167 3272 0 615 321 37 5 chr11 79726743 79726933 -69056539 - MIR3 SINE MIR -6 202 7 602 280 6 13 chr11 79727484 79727641 -69055831 - MIR3 SINE MIR -1 207 52 2591 229 44 106 chr11 79727729 79728323 -69055149 - HAL1 LINE L1 -2 2505 2034 1893 138 54 7 chr11 79728323 79728620 -69054852 + AluJb SINE Alu 1 311 -1 2591 229 44 106 chr11 79728620 79729324 -69054148 - HAL1 LINE L1 -473 2034 1288 732 271 80 77 chr11 79729393 79730065 -69053407 - HAL1 LINE L1 -1594 913 240 337 263 83 45 chr11 79730074 79730207 -69053265 - HAL1 LINE L1 -2310 197 60 1565 147 37 0 chr11 79730230 79730475 -69052997 + AluSx SINE Alu 50 303 -9 776 290 53 14 chr11 79730888 79731095 -69052377 + MIR SINE MIR 48 262 0 242 93 0 23 chr11 79731099 79731142 -69052330 + (TA)n Simple_repeat Simple_repeat 2 43 0 302 137 39 0 chr11 79731652 79731703 -69051769 - L2 LINE L2 0 3313 3261 358 343 110 0 chr11 79731718 79731864 -69051608 + MIR SINE MIR 31 192 -70 22 0 0 0 chr11 79733019 79733041 -69050431 + AT_rich Low_complexity Low_complexity 1 22 0 2322 105 0 7 chr11 79734667 79734962 -69048510 + AluSx SINE Alu 1 293 -19 1941 221 37 35 chr11 79735059 79735557 -69047915 - L1ME1 LINE L1 -229 5937 5436 1938 167 6 6 chr11 79735557 79735869 -69047603 - AluJb SINE Alu 0 312 1 1941 221 37 35 chr11 79735869 79735917 -69047555 - L1ME1 LINE L1 -730 5436 5390 1387 161 0 5 chr11 79735917 79736128 -69047344 - AluJb SINE Alu -17 295 86 301 221 0 35 chr11 79736814 79736900 -69046572 - MIR SINE MIR -14 248 166 463 339 64 0 chr11 79737082 79737253 -69046219 - MIR SINE MIR -32 230 49 260 312 79 45 chr11 79737406 79737608 -69045864 - L3 LINE CR1 -313 1264 1056 1986 192 48 3 chr11 79738024 79738523 -69044949 + MLT1E2 LTR MaLR 2 570 -56 7191 152 25 10 chr11 79738523 79740707 -69042765 + L1PA13 LINE L1 3911 6138 -25 298 138 46 0 chr11 79740718 79740783 -69042689 + MLT1E2 LTR MaLR 557 624 0 212 200 25 0 chr11 79740929 79740969 -69042503 - L2 LINE L2 -9 3304 3264 359 315 76 6 chr11 79741383 79741859 -69041613 + L1M4 LINE L1 4143 4651 -1495 626 280 0 7 chr11 79741878 79742028 -69041444 - MIR SINE MIR -21 241 93 185 452 48 0 chr11 79742057 79742141 -69041331 + L2 LINE L2 3153 3240 -32 404 321 121 5 chr11 79742883 79743073 -69040399 + MIR SINE MIR 47 258 -4 222 62 0 0 chr11 79743257 79743289 -69040183 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 255 271 136 54 chr11 79743808 79744066 -69039406 - L2 LINE L2 -182 3090 2812 513 299 86 38 chr11 79744642 79744956 -69038516 - L3 LINE CR1 -8 1569 1241 677 256 116 12 chr11 79745157 79745407 -69038065 - L1ME LINE L1 -5769 301 26 1928 183 0 10 chr11 79745441 79745747 -69037725 - AluJo SINE Alu -9 303 1 236 134 12 37 chr11 79745762 79745844 -69037628 + (TA)n Simple_repeat Simple_repeat 2 81 0 5090 236 143 45 chr11 79745905 79746570 -69036902 + HAL1 LINE L1 108 706 -1801 16960 45 3 3 chr11 79746570 79749495 -69033977 + L1PA5 LINE L1 3249 6151 -3 5090 236 143 45 chr11 79749495 79750749 -69032723 + HAL1 LINE L1 706 2270 -237 3236 204 22 24 chr11 79750749 79751471 -69032001 - MER72 LTR ERV1 -1 721 1 5090 236 143 45 chr11 79751471 79751735 -69031737 + HAL1 LINE L1 2270 2507 0 472 254 92 126 chr11 79752320 79752789 -69030683 - L2 LINE L2 -14 3258 2806 1275 166 73 93 chr11 79753151 79753440 -69030032 + AluJb SINE Alu 1 283 -29 1191 160 76 98 chr11 79753165 79753440 -69030032 + AluJb SINE Alu 15 318 0 228 29 57 0 chr11 79753440 79753475 -69029997 + (CAAAA)n Simple_repeat Simple_repeat 2 180 0 337 263 74 74 chr11 79753505 79753680 -69029792 + MIR SINE MIR 50 224 -38 252 308 62 54 chr11 79753676 79753806 -69029666 + MIR SINE MIR 58 188 -74 * 283 236 45 67 chr11 79755873 79755962 -69027510 - MER5C DNA MER1_type -237 87 1 2226 103 10 16 chr11 79756242 79756552 -69026920 - AluSx SINE Alu -4 308 1 334 174 87 0 chr11 79758086 79758155 -69025317 + MIR SINE MIR 112 186 -76 348 122 27 40 chr11 79758209 79758283 -69025189 - L1PA16 LINE L1 -2 6164 6092 1766 161 25 14 chr11 79758298 79758584 -69024888 - AluJb SINE Alu -23 289 1 2591 46 0 0 chr11 79758772 79759074 -69024398 - AluY SINE Alu -9 302 1 796 280 47 92 chr11 79759079 79759589 -69023883 - L1ME3A LINE L1 -4 6166 5680 221 379 58 0 chr11 79759723 79759810 -69023662 - MIR3 SINE MIR -9 199 108 2097 115 7 14 chr11 79759823 79760118 -69023354 + AluSx SINE Alu 1 293 -19 240 268 165 39 chr11 79760370 79760497 -69022975 - MIR SINE MIR -118 144 2 299 355 36 0 chr11 79760700 79760810 -69022662 + MIR SINE MIR 28 141 -67 25 31 0 0 chr11 79760810 79760842 -69022630 + AT_rich Low_complexity Low_complexity 1 32 0 1370 233 151 0 chr11 79761109 79761453 -69022019 + MSTD LTR MaLR 1 396 0 2053 135 7 3 chr11 79761830 79762126 -69021346 - AluJo SINE Alu -10 302 6 193 338 66 20 chr11 79762234 79762385 -69021087 - MIR3 SINE MIR 0 208 51 2205 72 0 79 chr11 79762390 79762708 -69020764 - AluY SINE Alu -16 295 3 22 0 0 0 chr11 79762820 79762842 -69020630 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr11 79762859 79762883 -69020589 + AT_rich Low_complexity Low_complexity 1 24 0 453 305 45 11 chr11 79763587 79763764 -69019708 + MIR SINE MIR 28 210 -52 21 0 0 0 chr11 79764091 79764112 -69019360 + AT_rich Low_complexity Low_complexity 1 21 0 252 159 72 0 chr11 79764145 79764214 -69019258 + (TA)n Simple_repeat Simple_repeat 2 75 0 1000 204 0 0 chr11 79764306 79764478 -69018994 - AluJb SINE Alu -17 295 124 288 0 0 0 chr11 79764501 79764533 -69018939 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 4115 155 42 46 chr11 79764533 79764740 -69018732 + L1MB8 LINE L1 5307 5513 -665 2640 89 3 24 chr11 79764740 79765112 -69018360 + THE1B LTR MaLR 1 364 0 4115 155 42 46 chr11 79765112 79765710 -69017762 + L1MB8 LINE L1 5513 6110 -68 2038 94 24 27 chr11 79765710 79766007 -69017465 - AluSx SINE Alu -16 296 1 4115 155 42 46 chr11 79766007 79766064 -69017408 + L1MB8 LINE L1 6110 6166 -12 238 240 21 64 chr11 79766465 79766596 -69016876 + MIR SINE MIR 35 189 -73 180 267 193 22 chr11 79766638 79766773 -69016699 + MIR SINE MIR 49 206 -56 6679 184 48 12 chr11 79767082 79768468 -69015004 - Charlie1a DNA MER1_type 0 1455 20 250 146 55 0 chr11 79768866 79768921 -69014551 + L2 LINE L2 1650 1707 -1607 201 39 0 0 chr11 79768962 79768988 -69014484 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 2265 263 78 66 chr11 79769033 79770283 -69013189 + L2 LINE L2 1971 3239 -74 1009 187 68 133 chr11 79770285 79770601 -69012871 - L1MB4 LINE L1 -10 6174 5879 329 269 9 46 chr11 79770609 79770717 -69012755 + L2 LINE L2 3210 3313 0 1935 194 67 28 chr11 79770756 79771326 -69012146 - L1MA9 LINE L1 -25 6267 5706 222 276 17 0 chr11 79773218 79773276 -69010196 + (TG)n Simple_repeat Simple_repeat 1 59 0 2039 125 0 10 chr11 79773562 79773859 -69009613 - AluSx SINE Alu -18 294 1 2187 95 3 3 chr11 79774577 79774872 -69008600 + AluSg SINE Alu 14 308 -2 25 35 0 52 chr11 79777684 79777742 -69005730 + AT_rich Low_complexity Low_complexity 1 55 0 323 304 72 16 chr11 79778095 79778220 -69005252 + L2 LINE L2 3133 3264 -8 531 289 26 36 chr11 79778241 79778435 -69005037 + L3 LINE CR1 898 1089 -488 430 324 105 14 chr11 79778680 79778899 -69004573 + L3 LINE CR1 1122 1360 -217 681 262 177 27 chr11 79778998 79779399 -69004073 + MLT1C LTR MaLR 7 467 0 205 354 0 0 chr11 79779412 79779477 -69003995 + L3 LINE CR1 1510 1574 -3 4451 99 215 129 chr11 79779514 79780954 -69002518 - pTR5 LTR ERV1 0 2438 738 851 170 10 100 chr11 79781683 79781883 -69001589 - MER20 DNA MER1_type -37 182 1 262 266 29 79 chr11 79782019 79782158 -69001314 + MIR SINE MIR 53 184 -78 211 133 0 22 chr11 79782904 79782949 -69000523 + (CAAA)n Simple_repeat Simple_repeat 1 44 0 2022 76 8 4 chr11 79782974 79783238 -69000234 - AluY SINE Alu -2 309 45 2225 111 0 13 chr11 79783574 79783881 -68999591 - AluSq SINE Alu -10 303 1 257 353 37 11 chr11 79783971 79784161 -68999311 - L1MEd LINE L1 -1979 4150 3956 517 236 115 13 chr11 79784210 79784367 -68999105 - MIR SINE MIR -8 254 82 1773 181 99 76 chr11 79784368 79784842 -68998630 - MLT1E1 LTR MaLR 0 654 170 1023 137 25 69 chr11 79784863 79785067 -68998405 + MER2 DNA MER2_type 1 195 -150 21 57 0 0 chr11 79785461 79785496 -68997976 + AT_rich Low_complexity Low_complexity 1 35 0 251 196 0 0 chr11 79785516 79785562 -68997910 + MER2 DNA MER2_type 270 315 -30 539 168 20 20 chr11 79785578 79785679 -68997793 - MLT1E1 LTR MaLR -551 103 3 1665 161 7 37 chr11 79785755 79786053 -68997419 - AluJo SINE Alu -23 289 1 357 237 69 23 chr11 79786092 79786223 -68997249 - L1MEd LINE L1 -2200 3929 3793 317 299 158 23 chr11 79786562 79786739 -68996733 - L1MEd LINE L1 -2685 3444 3244 341 275 25 50 chr11 79786741 79786861 -68996611 - L1MEd LINE L1 -4930 1189 1073 1711 153 45 17 chr11 79786919 79787207 -68996265 - AluJb SINE Alu -16 296 1 251 255 10 71 chr11 79787786 79787884 -68995588 + L2 LINE L2 3222 3313 0 23 33 0 0 chr11 79788484 79788514 -68994958 + AT_rich Low_complexity Low_complexity 1 30 0 1539 182 24 27 chr11 79788973 79789269 -68994203 + AluJo SINE Alu 1 295 -17 690 297 44 26 chr11 79789483 79789867 -68993605 - L1ME LINE L1 -515 5649 5259 191 163 20 82 chr11 79790104 79790153 -68993319 - L2 LINE L2 -1 3312 3267 * 267 294 158 7 chr11 79790119 79790265 -68993207 - MIR SINE MIR -7 255 88 189 295 108 23 chr11 79792427 79792556 -68990916 - L2 LINE L2 -8 3305 3166 333 320 40 59 chr11 79792678 79792931 -68990541 - L2 LINE L2 -212 3060 2813 303 250 0 0 chr11 79793078 79793138 -68990334 - Tigger1 DNA MER2_type 0 2418 2359 759 190 0 0 chr11 79793140 79793282 -68990190 + FLAM_C SINE Alu 1 142 -1 12716 126 80 9 chr11 79793420 79795525 -68987947 - Tigger1 DNA MER2_type -163 2255 1 272 212 285 30 chr11 79795795 79795960 -68987512 - MIR SINE MIR -14 248 42 288 288 144 8 chr11 79796356 79796474 -68986998 + MIR3 SINE MIR 75 208 0 574 239 36 6 chr11 79798818 79798985 -68984487 - MER104 DNA Tc2 -6 174 3 221 261 80 34 chr11 79799433 79799521 -68983951 + L2 LINE L2 2687 2778 -536 1112 301 84 37 chr11 79799549 79800249 -68983223 + L1M4 LINE L1 5 737 -5805 3314 226 56 14 chr11 79800256 79801401 -68982071 + L1M4 LINE L1 2009 3423 -3221 1888 167 0 0 chr11 79801401 79801694 -68981778 - AluJo SINE Alu -19 293 1 3314 226 56 14 chr11 79801694 79802146 -68981326 + L1M4 LINE L1 3423 3854 -2790 * 15874 135 73 12 chr11 79802144 79804739 -68978733 + L1M1 LINE L1 13 2764 -4801 2195 94 3 0 chr11 79804778 79805065 -68978407 + AluSc SINE Alu 21 308 -1 746 120 0 0 chr11 79805142 79805259 -68978213 + L1M1 LINE L1 2744 2860 -4705 1030 250 60 34 chr11 79805487 79806118 -68977354 - L1MEc LINE L1 -4516 1682 962 24 53 0 0 chr11 79806709 79806747 -68976725 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr11 79807844 79807870 -68975602 + AT_rich Low_complexity Low_complexity 1 26 0 380 205 185 55 chr11 79807881 79808081 -68975391 - MIR SINE MIR -36 226 1 23 68 0 0 chr11 79808084 79808128 -68975344 + AT_rich Low_complexity Low_complexity 1 44 0 738 181 0 0 chr11 79808128 79808244 -68975228 - FLAM_A SINE Alu -17 116 1 444 19 0 0 chr11 79810616 79810669 -68972803 + (CA)n Simple_repeat Simple_repeat 2 54 0 241 333 49 39 chr11 79811024 79811126 -68972346 + MIR SINE MIR 28 130 -78 913 213 0 0 chr11 79811259 79811423 -68972049 - FRAM SINE Alu -2 164 1 224 227 0 0 chr11 79811607 79811651 -68971821 + L2 LINE L2 3263 3306 -7 * 268 326 57 28 chr11 79811647 79811788 -68971684 + L2 LINE L2 3121 3265 -7 2106 138 3 3 chr11 79811816 79812121 -68971351 - AluSx SINE Alu -7 305 1 556 317 83 28 chr11 79812437 79812762 -68970710 + L2 LINE L2 2632 2974 -340 554 300 230 20 chr11 79812885 79813228 -68970244 + L2 LINE L2 2897 3311 -2 230 295 141 39 chr11 79813385 79813463 -68970009 + MIR SINE MIR 20 105 -103 22 70 0 0 chr11 79814551 79814594 -68968878 + AT_rich Low_complexity Low_complexity 1 43 0 25 31 0 0 chr11 79814661 79814693 -68968779 + AT_rich Low_complexity Low_complexity 1 32 0 376 167 13 26 chr11 79814772 79814850 -68968622 + L1MC5 LINE L1 7835 7911 -50 2215 78 3 14 chr11 79815253 79815549 -68967923 + AluY SINE Alu 1 293 -18 1603 158 88 0 chr11 79816174 79816446 -68967026 + AluJb SINE Alu 1 296 -16 1987 159 0 3 chr11 79816776 79817085 -68966387 - AluJb SINE Alu -3 309 2 807 161 59 149 chr11 79817220 79817475 -68965997 + MER21B LTR ERV1 11 242 -621 2046 184 33 13 chr11 79817507 79817898 -68965574 + MER21B LTR ERV1 352 750 -113 311 264 151 0 chr11 79817985 79818091 -68965381 + MIR3 SINE MIR 51 172 -36 2302 89 0 0 chr11 79818111 79818404 -68965068 - AluY SINE Alu -18 293 1 907 184 19 0 chr11 79818663 79818821 -68964651 + AluJo SINE Alu 121 281 -31 369 0 0 0 chr11 79818821 79818862 -68964610 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 299 177 0 65 chr11 79819194 79819256 -68964216 + L2 LINE L2 3256 3313 0 759 100 0 2 chr11 79819944 79820205 -68963267 + AluSx SINE Alu 1 312 0 1727 184 13 7 chr11 79820370 79820669 -68962803 - AluJb SINE Alu -11 301 1 352 258 11 0 chr11 79821355 79821444 -68962028 - L1MC4a LINE L1 -401 7407 7318 * 641 293 53 34 chr11 79821443 79821801 -68961671 - L1MC4 LINE L1 -764 7278 6914 3473 225 63 48 chr11 79821813 79822820 -68960652 - L1MEc LINE L1 -2805 4136 3146 1724 166 0 44 chr11 79822820 79823140 -68960332 - AluJo SINE Alu -4 308 3 3473 225 63 48 chr11 79823140 79823503 -68959969 - L1MEc LINE L1 -3795 3146 2790 1328 191 0 0 chr11 79823503 79823739 -68959733 - MER46A DNA MER2_type 0 236 1 3473 225 63 48 chr11 79823739 79823784 -68959688 - L1MEc LINE L1 -4151 2790 2747 2353 71 7 0 chr11 79823784 79824095 -68959377 + AluSg SINE Alu 1 313 0 3473 225 63 48 chr11 79824095 79824181 -68959291 - L1MEc LINE L1 -4194 2747 2618 467 156 0 0 chr11 79824210 79824287 -68959185 - AluS SINE Alu -11 298 222 312 266 92 28 chr11 79824387 79824496 -68958976 - L1MEc LINE L1 -4427 2695 2580 1902 104 0 0 chr11 79824496 79824745 -68958727 - AluSx SINE Alu -11 301 53 290 252 9 19 chr11 79824783 79824890 -68958582 + L1MCa LINE L1 1419 1524 -4902 * 971 283 65 28 chr11 79824889 79825289 -68958183 - L1MEc LINE L1 -5985 438 24 280 283 110 29 chr11 79825301 79825474 -68957998 - HAL1 LINE L1 -1523 984 798 430 268 73 8 chr11 79826926 79827049 -68956423 + MIR SINE MIR 20 150 -112 237 349 55 9 chr11 79827121 79827230 -68956242 + L2 LINE L2 2922 3035 -237 22 35 0 0 chr11 79828550 79828579 -68954893 + AT_rich Low_complexity Low_complexity 1 29 0 189 317 67 75 chr11 79828706 79828826 -68954646 - MIR3 SINE MIR -23 185 67 345 316 163 10 chr11 79828994 79829203 -68954269 + MIR SINE MIR 12 252 -10 431 301 56 70 chr11 79829259 79829472 -68954000 + MIR SINE MIR 3 212 -50 2336 182 24 2 chr11 79829628 79830045 -68953427 + MSTB LTR MaLR 1 426 0 198 330 62 45 chr11 79830586 79830698 -68952774 - MIR SINE MIR -92 170 57 250 221 35 106 chr11 79831575 79831688 -68951784 + MIR SINE MIR 56 160 -102 635 326 54 18 chr11 79832084 79832305 -68951167 + MIR SINE MIR 3 231 -31 412 350 35 71 chr11 79832827 79833110 -68950362 - L2 LINE L2 -5 3267 2995 271 217 0 0 chr11 79833341 79833402 -68950070 + MER5A DNA MER1_type 4 64 -125 301 295 172 0 chr11 79833420 79833542 -68949930 - MIR SINE MIR -101 161 19 808 257 18 9 chr11 79834147 79834369 -68949103 + L1ME1 LINE L1 34 257 -6139 1799 148 40 13 chr11 79834398 79834701 -68948771 + AluSx SINE Alu 1 311 -1 2932 211 89 30 chr11 79834735 79835641 -68947831 + L1ME1 LINE L1 5285 6403 0 2163 105 3 3 chr11 79835710 79836005 -68947467 + AluSq SINE Alu 1 295 -18 766 299 57 0 chr11 79836115 79836379 -68947093 + L1ME3A LINE L1 4044 4322 -1824 3352 198 37 7 chr11 79836397 79837135 -68946337 + L1MB8 LINE L1 5406 6165 -13 1759 243 72 83 chr11 79837375 79839177 -68944295 + L1ME3A LINE L1 4319 6102 -68 1265 150 5 0 chr11 79839196 79839403 -68944069 - Tigger5 DNA MER2_type -6 2317 2110 1618 208 3 50 chr11 79839406 79839728 -68943744 - Tigger5 DNA MER2_type -2016 307 1 1568 191 97 9 chr11 79839816 79840136 -68943336 + MER7A DNA MER2_type 1 346 0 2225 139 11 0 chr11 79840670 79841052 -68942420 + L1MB8 LINE L1 5585 5970 -208 * 4426 205 75 28 chr11 79841046 79842132 -68941340 + L1MC2 LINE L1 445 1581 -4959 838 233 6 0 chr11 79842132 79842308 -68941164 + FRAM SINE Alu 1 176 0 2087 134 0 0 chr11 79842338 79842621 -68940851 + AluSx SINE Alu 4 286 -26 612 244 45 68 chr11 79842630 79842780 -68940692 + L1MC2 LINE L1 1583 1735 -4805 2081 120 7 0 chr11 79842780 79843064 -68940408 + AluSq SINE Alu 14 299 -14 612 244 45 68 chr11 79843064 79843293 -68940179 + L1MC2 LINE L1 1735 1968 -4572 1582 199 3 14 chr11 79843293 79843589 -68939883 + AluJo SINE Alu 13 305 -7 612 244 45 68 chr11 79843589 79843710 -68939762 + L1MC2 LINE L1 1968 3973 -2567 41010 62 6 7 chr11 79843723 79849081 -68934391 + L1PA6 LINE L1 3 5364 -790 2896 13 0 0 chr11 79849081 79849398 -68934074 + AluYb8 SINE Alu 1 317 -1 41010 62 6 7 chr11 79849398 79850189 -68933283 + L1PA6 LINE L1 5364 6154 0 2398 217 29 43 chr11 79850191 79850939 -68932533 + L1MC2 LINE L1 3971 4764 -1776 1882 209 42 73 chr11 79850972 79851647 -68931825 + L1MC2 LINE L1 5027 5680 -860 230 169 0 85 chr11 79851657 79851716 -68931756 - FLAM_A SINE Alu -16 117 64 5511 140 54 24 chr11 79851716 79851756 -68931716 + L1MC2 LINE L1 5668 5705 -1033 2038 135 0 16 chr11 79851756 79852060 -68931412 + AluSx SINE Alu 1 299 -13 5511 140 54 24 chr11 79852060 79852994 -68930478 + L1MC2 LINE L1 5705 6677 -61 2480 73 0 3 chr11 79852994 79853296 -68930176 - AluY SINE Alu -10 301 1 5511 140 54 24 chr11 79853296 79853357 -68930115 + L1MC2 LINE L1 6677 6735 -3 2304 169 39 9 chr11 79854324 79854763 -68928709 + L1MB3 LINE L1 5723 6174 -9 183 291 94 68 chr11 79855279 79855396 -68928076 - L3 LINE CR1 -1236 341 222 878 179 7 0 chr11 79855588 79855733 -68927739 + MER46A DNA MER2_type 2 147 -89 1025 237 36 43 chr11 79855793 79856122 -68927350 + Charlie1b DNA MER1_type 6 332 -191 275 188 0 0 chr11 79856134 79856182 -68927290 + Charlie1b DNA MER1_type 473 520 -3 21 0 0 0 chr11 79856459 79856480 -68926992 + AT_rich Low_complexity Low_complexity 1 21 0 499 270 61 16 chr11 79856556 79856766 -68926706 + L1ME LINE L1 58 295 -5775 1393 269 35 22 chr11 79856786 79857295 -68926177 + L1ME LINE L1 338 853 -5217 3014 226 93 67 chr11 79857316 79858133 -68925339 + L1ME LINE L1 3537 4408 -1672 2284 62 0 14 chr11 79858133 79858442 -68925030 + AluY SINE Alu 2 306 0 3014 226 93 67 chr11 79858442 79858974 -68924498 + L1ME LINE L1 4408 4924 -1156 1105 95 0 7 chr11 79858979 79859126 -68924346 - AluSg SINE Alu -164 146 1 310 233 143 0 chr11 79859127 79859260 -68924212 + L1ME LINE L1 5270 5421 -675 1630 235 78 10 chr11 79859262 79859776 -68923696 + L1ME2 LINE L1 3384 3932 -2214 654 235 0 0 chr11 79859788 79859920 -68923552 + FLAM_A SINE Alu 2 133 0 186 392 0 0 chr11 79860368 79860442 -68923030 + MIR3 SINE MIR 87 160 -48 * 641 250 111 52 chr11 79860440 79860692 -68922780 - L2 LINE L2 0 3313 3047 196 300 0 0 chr11 79860689 79860739 -68922733 + MIR3 SINE MIR 152 201 -7 * 342 259 19 19 chr11 79862555 79862663 -68920809 - MIR3 SINE MIR -24 184 77 2044 141 0 0 chr11 79862971 79863262 -68920210 - AluJb SINE Alu -21 291 1 3496 213 85 25 chr11 79863315 79863467 -68920005 + L1ME2 LINE L1 4192 4333 -1831 15839 113 13 22 chr11 79863467 79865908 -68917564 + Tigger1 DNA MER2_type 2 2418 0 3496 213 85 25 chr11 79865908 79867058 -68916414 + L1ME2 LINE L1 4333 5412 -752 338 119 0 228 chr11 79867058 79867124 -68916348 + MADE1 DNA Mariner 3 40 -40 1809 90 4 4 chr11 79867124 79867358 -68916114 + AluSc SINE Alu 62 295 -14 338 119 0 228 chr11 79867358 79867392 -68916080 + MADE1 DNA Mariner 40 80 0 3496 213 85 25 chr11 79867392 79867848 -68915624 + L1ME2 LINE L1 5412 6070 -94 1577 174 43 4 chr11 79867848 79868129 -68915343 - AluJo SINE Alu -20 292 1 3496 213 85 25 chr11 79868129 79868230 -68915242 + L1ME2 LINE L1 6070 6163 -1 393 370 32 36 chr11 79868625 79868903 -68914569 + L2 LINE L2 2809 3085 -187 420 425 20 12 chr11 79870328 79870573 -68912899 - L2 LINE L2 -510 2804 2558 3954 236 117 53 chr11 79870621 79872065 -68911407 + L1ME2 LINE L1 3273 4622 -1524 2168 107 4 0 chr11 79872065 79872378 -68911094 + AluSp SINE Alu 1 314 0 276 30 0 0 chr11 79872386 79872419 -68911053 + (CA)n Simple_repeat Simple_repeat 2 34 0 3954 236 117 53 chr11 79872419 79872671 -68910801 + L1ME2 LINE L1 4628 5089 -1057 3041 220 26 36 chr11 79872677 79872740 -68910732 + L1ME2 LINE L1 5176 5238 -1096 369 0 0 0 chr11 79872740 79872781 -68910691 + (TG)n Simple_repeat Simple_repeat 2 42 0 3041 220 26 36 chr11 79872781 79873191 -68910281 + L1ME2 LINE L1 5238 5651 -683 1441 189 32 11 chr11 79873191 79873472 -68910000 + AluJo SINE Alu 1 287 -25 3041 220 26 36 chr11 79873472 79873955 -68909517 + L1ME2 LINE L1 5651 6287 -47 367 278 0 0 chr11 79873962 79874052 -68909420 + L1MC4 LINE L1 6614 6703 -1339 874 311 94 19 chr11 79874081 79874560 -68908912 - L2 LINE L2 -832 2482 1968 233 291 38 0 chr11 79874667 79874746 -68908726 + L2 LINE L2 2618 2699 -615 268 253 51 13 chr11 79875764 79875843 -68907629 + L2 LINE L2 3191 3272 0 560 244 249 10 chr11 79875845 79876038 -68907434 - MIR SINE MIR -11 251 13 2099 196 73 80 chr11 79876326 79876528 -68906944 + MLT1E3 LTR MaLR 1 203 -421 1227 183 98 64 chr11 79876528 79876905 -68906567 + MLT1B LTR MaLR 1 390 0 2099 196 73 80 chr11 79876905 79877330 -68906142 + MLT1E3 LTR MaLR 203 624 0 679 307 72 71 chr11 79877605 79878132 -68905340 - L2 LINE L2 -4 3268 2741 346 324 80 78 chr11 79878720 79879094 -68904378 - L3 LINE CR1 -543 1034 660 345 346 39 0 chr11 79879099 79879203 -68904269 + L2 LINE L2 3151 3258 -14 413 335 179 0 chr11 79879229 79879408 -68904064 - L3 LINE CR1 -931 646 436 258 389 22 26 chr11 79879475 79879701 -68903771 - L2 LINE L2 -222 3050 2826 256 258 33 73 chr11 79880389 79880540 -68902932 + L1M4 LINE L1 3342 3486 -2660 390 151 96 0 chr11 79880591 79880664 -68902808 + MSTC LTR MaLR 1 80 -348 1149 128 0 0 chr11 79880664 79880820 -68902652 - FRAM SINE Alu -10 166 11 21 57 0 0 chr11 79881094 79881129 -68902343 + AT_rich Low_complexity Low_complexity 1 35 0 1056 145 73 64 chr11 79882098 79882332 -68901140 + MER46A DNA MER2_type 1 236 0 242 273 34 34 chr11 79882567 79882655 -68900817 + Charlie3 DNA MER1_type 1517 1604 -1106 425 287 211 5 chr11 79882864 79883073 -68900399 + MIR SINE MIR 3 254 -8 417 329 77 13 chr11 79883106 79883340 -68900132 - MARNA DNA Mariner -115 471 223 447 311 83 21 chr11 79883416 79883609 -68899863 - MIR3 SINE MIR -1 207 3 216 228 0 0 chr11 79884150 79884207 -68899265 + (TG)n Simple_repeat Simple_repeat 1 57 0 3713 246 61 87 chr11 79884582 79886409 -68897063 + L1MEc LINE L1 39 1818 -4578 1724 105 117 0 chr11 79886409 79886657 -68896815 - AluSg1 SINE Alu -32 277 1 3713 246 61 87 chr11 79886657 79886704 -68896768 + L1MEc LINE L1 1818 1865 -4531 1146 191 81 0 chr11 79886730 79886965 -68896507 + AluJo SINE Alu 42 295 -17 3606 239 82 11 chr11 79887000 79888026 -68895446 + L1MC4 LINE L1 6792 7890 -152 228 234 0 31 chr11 79888032 79888096 -68895376 + L1MC4 LINE L1 7981 8042 0 234 106 43 21 chr11 79888249 79888296 -68895176 - LTR13 LTR ERVK -295 712 665 557 159 23 0 chr11 79888723 79888811 -68894661 - 5S rRNA rRNA -31 90 1 6784 125 20 17 chr11 79889087 79891160 -68892312 - L1MA3 LINE L1 0 6305 4223 2164 100 0 4 chr11 79891160 79891478 -68891994 + AluSc SINE Alu 1 317 0 6784 125 20 17 chr11 79891478 79891529 -68891943 - L1MA3 LINE L1 -2082 4223 4174 411 207 30 52 chr11 79891868 79892003 -68891469 + HAL1b LINE L1 747 878 -470 276 306 95 91 chr11 79892290 79892532 -68890940 + L2 LINE L2 3025 3267 -5 540 0 0 0 chr11 79892756 79892816 -68890656 + (GAAA)n Simple_repeat Simple_repeat 1 60 0 335 303 151 20 chr11 79893539 79893691 -68889781 + MIR SINE MIR 82 253 -9 189 336 77 28 chr11 79893965 79894108 -68889364 - L2 LINE L2 -23 3290 3141 646 228 88 76 chr11 79894708 79894776 -68888696 + L2 LINE L2 1863 1929 -1385 2506 64 6 10 chr11 79894776 79895088 -68888384 - AluY SINE Alu 0 311 1 646 228 88 76 chr11 79895088 79895134 -68888338 + L2 LINE L2 1929 1973 -1341 821 146 0 8 chr11 79895134 79895264 -68888208 - FLAM_C SINE Alu -4 129 1 646 228 88 76 chr11 79895264 79895411 -68888061 + L2 LINE L2 1973 2128 -1186 1077 155 0 6 chr11 79895626 79895794 -68887678 - FRAM SINE Alu -13 163 1 894 297 211 11 chr11 79895794 79896306 -68887166 + L2 LINE L2 2687 3296 -17 2141 111 3 7 chr11 79896377 79896675 -68886797 + AluSg SINE Alu 1 297 -13 387 255 130 18 chr11 79896678 79896843 -68886629 + MIR SINE MIR 66 251 -11 942 295 62 47 chr11 79896890 79897277 -68886195 - L3 LINE CR1 -316 1261 869 2397 74 0 10 chr11 79899058 79899367 -68884105 + AluY SINE Alu 1 306 -5 31 0 0 0 chr11 79899418 79899449 -68884023 + AT_rich Low_complexity Low_complexity 1 31 0 354 303 34 17 chr11 79899591 79899710 -68883762 - L2 LINE L2 0 3313 3193 328 314 81 22 chr11 79899913 79900136 -68883336 + L1 LINE L1 3332 3567 -2579 363 234 64 0 chr11 79900207 79900301 -68883171 - MIR SINE MIR -37 225 126 217 253 46 58 chr11 79901106 79901193 -68882279 + MIR SINE MIR 62 147 -61 211 324 27 27 chr11 79901552 79901663 -68881809 - MIR3 SINE MIR -5 203 93 1007 138 0 0 chr11 79904062 79904207 -68879265 + LTR8 LTR ERV1 547 691 0 358 127 32 0 chr11 79904207 79904263 -68879209 + Alu SINE Alu 241 298 -4 530 299 103 26 chr11 79904325 79904559 -68878913 + MIR SINE MIR 10 261 -1 1206 242 76 40 chr11 79904581 79905109 -68878363 + L1M4 LINE L1 3305 3851 -2295 460 247 31 19 chr11 79905111 79905273 -68878199 + L1MB5 LINE L1 1987 2150 -4234 1792 186 0 7 chr11 79905309 79905604 -68877868 - AluJb SINE Alu -19 293 1 861 142 15 8 chr11 79905604 79905738 -68877734 - AluJo SINE Alu -177 135 1 3243 223 26 63 chr11 79905739 79906328 -68877144 + L1MB5 LINE L1 3462 4071 -2339 2914 154 33 22 chr11 79906328 79906907 -68876565 + L1MB3 LINE L1 5598 6182 -1 3243 223 26 63 chr11 79906907 79906994 -68876478 + L1MB5 LINE L1 4071 4160 -2250 1647 157 7 52 chr11 79906994 79907281 -68876191 + AluJo SINE Alu 20 293 -19 3243 223 26 63 chr11 79907281 79908156 -68875316 + L1MB5 LINE L1 4160 5066 -1344 2173 113 0 3 chr11 79908156 79908464 -68875008 + AluSx SINE Alu 1 307 0 3243 223 26 63 chr11 79908464 79908810 -68874662 + L1MB5 LINE L1 5066 5423 -987 3243 184 18 34 chr11 79908810 79909527 -68873945 + L1MB5 LINE L1 5705 6410 0 3243 223 26 63 chr11 79909527 79909544 -68873928 + L1MB5 LINE L1 5423 6410 0 313 287 98 33 chr11 79909781 79909903 -68873569 + MIR SINE MIR 16 145 -63 575 203 186 93 chr11 79909948 79910185 -68873287 - MIR SINE MIR -1 261 3 201 286 0 20 chr11 79910185 79910224 -68873248 + L3 LINE CR1 1530 1567 -10 668 185 115 0 chr11 79910627 79910787 -68872685 - MER58C DNA MER1_type -1 214 38 255 341 107 74 chr11 79911373 79911672 -68871800 - L2 LINE L2 -452 2862 2554 246 156 0 0 chr11 79911694 79911739 -68871733 + GA-rich Low_complexity Low_complexity 2 46 0 329 390 80 19 chr11 79911866 79912279 -68871193 - L2 LINE L2 -576 2738 2301 1635 107 16 20 chr11 79912345 79912597 -68870875 + MER1B DNA MER1_type 129 339 0 556 316 60 12 chr11 79912670 79912838 -68870634 - L2 LINE L2 0 3272 3097 333 332 117 9 chr11 79913180 79913403 -68870069 - L2 LINE L2 -837 2477 2231 30 0 0 0 chr11 79913979 79914009 -68869463 + AT_rich Low_complexity Low_complexity 1 30 0 525 282 103 51 chr11 79915185 79915419 -68868053 + MIR SINE MIR 5 250 -12 27 0 0 0 chr11 79915476 79915503 -68867969 + AT_rich Low_complexity Low_complexity 1 27 0 229 317 178 0 chr11 79915955 79916116 -68867356 + MIR SINE MIR 60 254 -8 184 353 35 0 chr11 79916192 79916277 -68867195 + MIR SINE MIR 19 106 -102 298 278 35 35 chr11 79916502 79916617 -68866855 + MIR SINE MIR 97 211 -51 2314 71 7 7 chr11 79916635 79916932 -68866540 + AluSg1 SINE Alu 1 297 -12 2223 114 3 0 chr11 79916990 79917288 -68866184 + AluSx SINE Alu 11 309 -3 318 323 50 0 chr11 79917325 79917424 -68866048 + MIR3 SINE MIR 74 177 -31 242 313 30 0 chr11 79917447 79917514 -68865958 - MIR SINE MIR -58 150 82 426 310 8 31 chr11 79918116 79918245 -68865227 - L2 LINE L2 -1 3271 3146 183 305 34 17 chr11 79918843 79918902 -68864570 + L2 LINE L2 3186 3245 -27 867 117 0 97 chr11 79919027 79919172 -68864300 + FLAM_C SINE Alu 1 131 -2 852 102 0 8 chr11 79919981 79920099 -68863373 - FLAM_C SINE Alu -3 140 24 505 167 12 0 chr11 79920103 79920187 -68863285 + AluS SINE Alu 3 87 -226 256 154 0 0 chr11 79920187 79920226 -68863246 - FLAM_C SINE Alu -94 39 1 387 204 41 41 chr11 79920400 79920498 -68862974 - MER5C DNA MER1_type 0 324 227 491 267 25 0 chr11 79920509 79920629 -68862843 - MER5C DNA MER1_type -201 123 1 984 164 89 65 chr11 79920964 79921178 -68862294 - AluJo SINE Alu -18 294 76 268 264 121 50 chr11 79921231 79921371 -68862101 - HAL1 LINE L1 -953 1554 1405 2109 109 7 0 chr11 79921674 79921958 -68861514 - AluSg SINE Alu -24 286 1 663 229 181 5 chr11 79922252 79922440 -68861032 + MIR SINE MIR 42 262 0 1346 174 28 42 chr11 79922928 79923216 -68860256 - AluJo SINE Alu -8 304 21 317 244 56 0 chr11 79923311 79923401 -68860071 + MIR SINE MIR 166 260 -2 266 308 75 23 chr11 79923545 79923678 -68859794 - L2 LINE L2 -1 3271 3132 1983 286 93 57 chr11 79923796 79923903 -68859569 + L2 LINE L2 1883 1985 -1287 267 31 0 0 chr11 79923903 79923935 -68859537 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1983 286 93 57 chr11 79923935 79925188 -68858284 + L2 LINE L2 1985 3271 -1 415 346 89 8 chr11 79925277 79925514 -68857958 + MIR SINE MIR 1 256 -6 1726 175 0 32 chr11 79926412 79926721 -68856751 + AluJo SINE Alu 1 299 -13 2178 71 0 51 chr11 79926992 79927109 -68856363 + AluSx SINE Alu 21 142 -170 2571 54 0 0 chr11 79927109 79927407 -68856065 + AluY SINE Alu 1 298 -13 2270 104 3 0 chr11 79927412 79927719 -68855753 + AluSx SINE Alu 2 309 -3 2178 71 0 51 chr11 79927719 79927889 -68855583 + AluSx SINE Alu 146 299 -13 472 229 14 21 chr11 79928379 79928519 -68854953 + L1ME4a LINE L1 5949 6087 -34 235 315 51 22 chr11 79929324 79929470 -68854002 + MIR SINE MIR 56 206 -56 3138 173 147 27 chr11 79929607 79930600 -68852872 + L1MB8 LINE L1 4243 5434 -732 366 23 0 0 chr11 79930600 79930643 -68852829 + (GA)n Simple_repeat Simple_repeat 2 44 0 3138 173 147 27 chr11 79930643 79930959 -68852513 + L1MB8 LINE L1 5434 5711 -455 459 198 9 26 chr11 79930960 79931076 -68852396 + L1MB8 LINE L1 6065 6178 0 279 79 0 0 chr11 79931448 79931486 -68851986 + (T)n Simple_repeat Simple_repeat 1 38 0 21 57 0 0 chr11 79931945 79931980 -68851492 + AT_rich Low_complexity Low_complexity 1 35 0 1097 129 29 27 chr11 79932042 79932255 -68851217 + L1MA8 LINE L1 5891 6097 -107 2110 134 3 10 chr11 79932328 79932627 -68850845 - AluSx SINE Alu -15 297 1 448 337 74 11 chr11 79932862 79933052 -68850420 + MIR SINE MIR 2 203 -59 280 229 48 12 chr11 79933057 79933140 -68850332 + MER117 DNA MER1_type 5 90 -107 679 184 0 0 chr11 79933140 79933249 -68850223 + AluJo SINE Alu 2 110 -202 418 148 114 0 chr11 79933251 79933339 -68850133 + MER4A LTR ERV1 1 98 -566 1433 137 37 79 chr11 79933339 79933689 -68849783 + MER4A LTR ERV1 261 654 -10 1198 106 0 136 chr11 79933692 79933928 -68849544 + AluJo SINE Alu 109 312 0 2322 90 3 10 chr11 79934002 79934301 -68849171 + AluSp SINE Alu 1 297 -16 286 329 98 39 chr11 79935432 79935765 -68847707 - L2 LINE L2 -222 3050 2695 5914 62 19 80 chr11 79935921 79936845 -68846627 + SVA Other Other 1 868 -518 193 243 27 40 chr11 79937432 79937506 -68845966 - MIR3 SINE MIR -32 176 104 299 360 11 1 chr11 79939395 79939540 -68843932 + MIR SINE MIR 29 150 -58 197 0 71 0 chr11 79942275 79942303 -68841169 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 1682 153 4 0 chr11 79942315 79942570 -68840902 - AluSx SINE Alu -56 256 1 563 169 119 51 chr11 79943147 79943265 -68840207 - FLAM_C SINE Alu -16 127 2 204 226 48 16 chr11 79943265 79943327 -68840145 + MER5A DNA MER1_type 48 111 -78 2052 98 7 4 chr11 79943555 79943832 -68839640 - AluSp SINE Alu -4 309 32 226 270 0 16 chr11 79944393 79944456 -68839016 - MIR3 SINE MIR -22 186 125 2147 66 0 4 chr11 79944456 79944714 -68838758 - AluSg SINE Alu -53 257 1 333 281 9 35 chr11 79945028 79945142 -68838330 - MIR SINE MIR -54 208 98 280 305 7 57 chr11 79945363 79945504 -68837968 - L3 LINE CR1 -98 1479 1346 209 287 115 0 chr11 79945657 79945744 -68837728 + MIR SINE MIR 53 149 -59 2472 42 0 7 chr11 79946523 79946868 -68836604 - AluY SINE Alu 0 343 1 226 285 51 0 chr11 79947384 79947472 -68836000 - MIR SINE MIR -79 129 77 183 80 0 0 chr11 79948470 79948495 -68834977 + (GGA)n Simple_repeat Simple_repeat 1 25 0 238 306 61 34 chr11 79949362 79949509 -68833963 + MIR SINE MIR 80 230 -32 * 413 306 77 71 chr11 79949500 79949892 -68833580 + L2 LINE L2 2900 3293 -20 213 220 49 48 chr11 79950647 79950730 -68832742 - MIR SINE MIR -88 120 37 1056 133 0 0 chr11 79950868 79951048 -68832424 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 301 95 0 0 chr11 79952187 79952229 -68831243 - MER5A DNA MER1_type -74 115 74 359 118 0 0 chr11 79953000 79953051 -68830421 - MER5A DNA MER1_type -74 115 65 428 273 97 0 chr11 79953391 79953545 -68829927 + MIR SINE MIR 16 184 -78 305 239 132 32 chr11 79953998 79954149 -68829323 + MIR3 SINE MIR 27 185 -23 292 252 259 15 chr11 79954611 79954746 -68828726 - MIR SINE MIR -66 196 29 520 273 89 39 chr11 79956267 79956496 -68826976 - MIR SINE MIR -21 241 6 355 350 102 5 chr11 79956703 79956900 -68826572 - MIR SINE MIR -35 227 12 180 125 0 0 chr11 79958192 79958224 -68825248 + (CGGG)n Simple_repeat Simple_repeat 4 35 0 207 281 80 55 chr11 79958305 79958504 -68824968 + L2 LINE L2 2857 3060 -212 510 296 31 6 chr11 79958985 79959144 -68824328 + MIR SINE MIR 34 196 -66 272 268 107 54 chr11 79959152 79959264 -68824208 - MIR3 SINE MIR -86 122 5 383 350 123 9 chr11 79960241 79960461 -68823011 + MIR SINE MIR 17 261 -1 297 278 41 128 chr11 79960558 79960878 -68822594 - L2 LINE L2 -16 3256 2965 253 252 187 32 chr11 79961288 79961411 -68822061 + MIR3 SINE MIR 60 201 -7 1223 249 177 14 chr11 79961865 79962374 -68821098 + L2 LINE L2 1990 2581 -733 251 331 73 37 chr11 79962412 79962548 -68820924 - MIR3 SINE MIR -55 153 13 224 77 26 0 chr11 79962922 79962961 -68820511 + (TA)n Simple_repeat Simple_repeat 1 40 0 1702 153 6 72 chr11 79963913 79964233 -68819239 - AluJb SINE Alu -13 299 1 1134 113 12 0 chr11 79964338 79964498 -68818974 - AluSg/x SINE Alu -33 277 116 353 250 43 17 chr11 79965059 79965175 -68818297 - MIR3 SINE MIR -8 200 82 283 299 51 29 chr11 79965174 79965311 -68818161 - L2 LINE L2 -208 3064 2925 * 463 255 9 9 chr11 79965491 79965597 -68817875 + MIR SINE MIR 21 126 -136 306 203 58 0 chr11 79966088 79966157 -68817315 + L2 LINE L2 3019 3091 -181 289 291 45 0 chr11 79966225 79966335 -68817137 + MLT1I LTR MaLR 282 396 -13 389 196 248 0 chr11 79967129 79967262 -68816210 + MER103 DNA DNA 1 166 0 190 347 0 0 chr11 79967634 79967683 -68815789 - L2 LINE L2 0 3272 3224 531 308 84 26 chr11 79968538 79968765 -68814707 - MIR SINE MIR -15 247 8 218 157 0 20 chr11 79968788 79968839 -68814633 + GA-rich Low_complexity Low_complexity 1 50 0 300 372 93 11 chr11 79968893 79969076 -68814396 + MIR SINE MIR 59 256 -6 238 309 25 0 chr11 79969177 79969258 -68814214 + MIR3 SINE MIR 109 191 -17 391 239 78 7 chr11 79969327 79969469 -68814003 - MIR3 SINE MIR -23 185 34 215 343 15 0 chr11 79969953 79970020 -68813452 + MIR SINE MIR 25 92 -116 191 341 99 0 chr11 79970295 79970386 -68813086 + MIR SINE MIR 124 223 -39 585 242 20 20 chr11 79970645 79970794 -68812678 - MIR3 SINE MIR -50 158 10 1944 222 28 15 chr11 79971645 79972105 -68811367 + MLT1C LTR MaLR 1 466 -1 354 319 101 27 chr11 79972142 79972330 -68811142 + MIR SINE MIR 51 252 -10 237 198 31 0 chr11 79972760 79972856 -68810616 + (TCCA)n Simple_repeat Simple_repeat 3 101 0 237 303 27 15 chr11 79973340 79973451 -68810021 + MIR SINE MIR 70 145 -63 349 372 0 0 chr11 79973771 79973884 -68809588 + MIR SINE MIR 28 140 -68 419 215 21 0 chr11 79973934 79974027 -68809445 - MER103 DNA DNA -18 148 54 278 303 53 40 chr11 79974589 79974741 -68808731 + MIR3 SINE MIR 45 198 -10 269 302 88 24 chr11 79974822 79975013 -68808459 + L2 LINE L2 2768 2982 -290 427 274 7 72 chr11 79975221 79975297 -68808175 + MIR SINE MIR 76 155 -107 2070 98 11 14 chr11 79975297 79975626 -68807846 + AluSx SINE Alu 1 328 0 427 274 7 72 chr11 79975626 79975651 -68807821 + MIR SINE MIR 155 180 -82 1369 194 57 18 chr11 79975651 79975934 -68807538 + AluJo SINE Alu 1 294 -18 427 274 7 72 chr11 79975934 79975983 -68807489 + MIR SINE MIR 180 218 -44 1836 111 48 4 chr11 79975993 79976263 -68807209 + AluSc SINE Alu 24 305 -4 364 308 0 0 chr11 79976317 79976408 -68807064 + MIR SINE MIR 36 126 -82 434 236 9 18 chr11 79978110 79978220 -68805252 + MIR SINE MIR 30 138 -70 202 217 100 67 chr11 79979261 79979321 -68804151 - MIR3 SINE MIR -50 158 97 395 259 30 30 chr11 79979528 79979659 -68803813 - MIR SINE MIR -61 147 17 296 211 5 14 chr11 79979639 79979712 -68803760 - MIR SINE MIR -66 142 95 * 761 281 5 43 chr11 79980349 79980559 -68802913 + MIR SINE MIR 36 237 -25 299 300 0 11 chr11 79980561 79980651 -68802821 + (CATATA)n Simple_repeat Simple_repeat 1 89 0 194 361 97 34 chr11 79980854 79981092 -68802380 + L2 LINE L2 2911 3163 -109 299 207 27 126 chr11 79981340 79981451 -68802021 + MIR3 SINE MIR 90 189 -19 263 247 23 29 chr11 79982269 79982373 -68801099 - MIR SINE MIR -61 147 59 246 188 109 16 chr11 79982605 79982669 -68800803 - MIR SINE MIR -65 143 74 22 0 0 0 chr11 79982857 79982879 -68800593 + GC_rich Low_complexity Low_complexity 1 22 0 2362 68 0 3 chr11 79983528 79983835 -68799637 + AluSq SINE Alu 1 306 -7 403 240 143 39 chr11 79983852 79984006 -68799466 - MIR SINE MIR -72 190 21 221 257 27 27 chr11 79984487 79984561 -68798911 + MIR SINE MIR 73 146 -116 35 24 0 0 chr11 79986767 79986809 -68796663 + GC_rich Low_complexity Low_complexity 1 42 0 392 282 1 54 chr11 79988347 79988496 -68794976 + MIR SINE MIR 11 151 -63 256 274 95 12 chr11 79988494 79988578 -68794894 - MIR SINE MIR -64 198 108 * 424 270 86 20 chr11 79989449 79989601 -68793871 + MIR3 SINE MIR 24 185 -23 2230 114 3 0 chr11 79989898 79990204 -68793268 + AluSx SINE Alu 1 307 -5 180 0 0 0 chr11 79990304 79990324 -68793148 + (A)n Simple_repeat Simple_repeat 1 20 0 2130 99 3 3 chr11 79990652 79990959 -68792513 - AluSq SINE Alu 0 307 1 324 323 0 0 chr11 79991256 79991352 -68792120 + MIR SINE MIR 46 141 -67 222 304 87 0 chr11 79991479 79991571 -68791901 - MIR SINE MIR -123 139 40 255 277 143 8 chr11 79992426 79992545 -68790927 - MIR3 SINE MIR -41 167 33 365 254 179 23 chr11 79992650 79993001 -68790471 + MLT1H LTR MaLR 57 537 -12 188 320 90 10 chr11 79993146 79993246 -68790226 + L2 LINE L2 3139 3246 -26 * 239 374 23 15 chr11 79993226 79993357 -68790115 - L3 LINE CR1 -100 1477 1346 556 303 110 9 chr11 79993539 79993757 -68789715 + MIR SINE MIR 23 262 0 220 360 142 20 chr11 79993864 79994111 -68789361 - L2 LINE L2 -338 2976 2700 505 203 10 0 chr11 79994632 79994749 -68788723 - MIR SINE MIR -73 135 34 445 230 10 10 chr11 79995080 79995180 -68788292 - MIR3 SINE MIR -45 163 64 215 310 85 23 chr11 79995173 79995302 -68788170 + L2 LINE L2 3111 3247 -25 * 221 284 57 0 chr11 79995434 79995522 -68787950 - MIR SINE MIR -83 125 33 465 317 76 18 chr11 79995729 79995953 -68787519 - MIR SINE MIR -1 261 25 469 234 154 26 chr11 79996012 79996239 -68787233 + MLT1K LTR MaLR 4 259 -329 326 248 162 8 chr11 79996605 79996722 -68786750 + MIR3 SINE MIR 13 147 -61 440 157 39 0 chr11 79996811 79996913 -68786559 + L1 LINE L1 5225 5330 -816 704 144 0 72 chr11 79996914 79997039 -68786433 + AluJb SINE Alu 1 116 -196 45 19 0 0 chr11 79997039 79997091 -68786381 + AT_rich Low_complexity Low_complexity 1 52 0 4868 139 23 2 chr11 79997095 79997958 -68785514 + L1PA15 LINE L1 5285 6165 0 1081 171 12 21 chr11 79997961 79998201 -68785271 - L1MB7 LINE L1 -21 6163 5926 2516 175 28 31 chr11 79998207 79998513 -68784959 - L1MB7 LINE L1 -310 5864 5558 2276 87 3 19 chr11 79998513 79998685 -68784787 - AluSq SINE Alu -9 304 138 2062 113 3 22 chr11 79998685 79999003 -68784469 - AluSx SINE Alu 0 312 1 2276 87 3 19 chr11 79999003 79999139 -68784333 - AluSq SINE Alu -175 138 1 2516 175 28 31 chr11 79999139 79999683 -68783789 - L1MB7 LINE L1 -616 5558 5019 298 128 8 214 chr11 79999687 79999773 -68783699 - L1MB7 LINE L1 -1227 4919 4861 1706 157 3 30 chr11 79999773 80000078 -68783394 + AluJo SINE Alu 1 297 -15 298 128 8 214 chr11 80000078 80000108 -68783364 - L1MB7 LINE L1 -1285 4861 4827 584 286 88 23 chr11 80000865 80001082 -68782390 - MIR SINE MIR -12 250 20 301 281 111 22 chr11 80001926 80002061 -68781411 + L2 LINE L2 3117 3263 -50 2324 98 0 0 chr11 80002139 80002446 -68781026 - AluSx SINE Alu -5 307 1 205 179 0 0 chr11 80002680 80002719 -68780753 - MIR3 SINE MIR -11 197 159 591 201 41 35 chr11 80002829 80002998 -68780474 - L1MB7 LINE L1 -54 6130 5961 363 237 62 10 chr11 80003000 80003097 -68780375 - MIR SINE MIR -73 135 34 436 212 35 0 chr11 80003347 80003460 -68780012 + L2 LINE L2 2957 3073 -240 852 228 0 0 chr11 80003467 80003634 -68779838 + AluJb SINE Alu 138 304 -8 489 328 6 6 chr11 80003716 80003887 -68779585 + L2 LINE L2 3125 3295 -18 183 80 0 0 chr11 80003888 80003913 -68779559 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 207 327 18 45 chr11 80004608 80004718 -68778754 - MIR SINE MIR -79 129 23 410 290 62 48 chr11 80004774 80004919 -68778553 - MIR3 SINE MIR -48 160 23 242 313 0 12 chr11 80005929 80006012 -68777460 + MIR SINE MIR 176 257 -5 255 278 79 48 chr11 80006370 80006496 -68776976 - MIR3 SINE MIR -6 202 73 485 291 55 50 chr11 80007058 80007240 -68776232 - MIR SINE MIR -58 204 22 727 188 57 32 chr11 80007526 80007716 -68775756 + MIR SINE MIR 35 230 -32 770 187 105 0 chr11 80007819 80007990 -68775482 - MER5A DNA MER1_type 0 189 1 1597 95 78 16 chr11 80009058 80009300 -68774172 - AluSx SINE Alu -10 302 46 194 225 153 27 chr11 80010239 80010350 -68773122 + L2 LINE L2 3147 3271 -1 675 13 0 0 chr11 80011565 80011640 -68771832 + tRNA-Pro-CCT tRNA tRNA 1 75 0 614 27 0 0 chr11 80011877 80011950 -68771522 - tRNA-Pro-CCA tRNA tRNA -2 73 1 411 293 236 17 chr11 80012986 80013508 -68769964 + L2 LINE L2 2312 2947 -367 1744 109 24 100 chr11 80013696 80014025 -68769447 + AluYb8 SINE Alu 1 304 -14 367 319 112 9 chr11 80014055 80014171 -68769301 - L2 LINE L2 -5 3308 3181 821 238 111 10 chr11 80014282 80014580 -68768892 - LTR16A LTR ERVL -57 393 66 373 294 48 68 chr11 80015215 80015292 -68768180 - MIR SINE MIR -26 236 159 2154 120 0 7 chr11 80015292 80015593 -68767879 - AluSx SINE Alu -12 300 2 373 294 48 68 chr11 80015593 80015705 -68767767 - MIR SINE MIR -103 159 48 334 379 37 12 chr11 80016302 80016463 -68767009 - MIR SINE MIR -19 243 79 1226 153 0 44 chr11 80016666 80016837 -68766635 - AluJo SINE Alu -4 308 148 2194 87 28 0 chr11 80016837 80017125 -68766347 - AluY SINE Alu -15 296 1 1226 153 0 44 chr11 80017125 80017181 -68766291 - AluJo SINE Alu -164 148 91 607 316 59 0 chr11 80017863 80018050 -68765422 - MIR SINE MIR -6 256 59 203 301 133 30 chr11 80018966 80019169 -68764303 + L2 LINE L2 2754 2977 -337 283 359 30 15 chr11 80019457 80019588 -68763884 + MIR3 SINE MIR 75 207 -1 219 286 12 24 chr11 80020606 80020690 -68762782 + MIR3 SINE MIR 109 191 -17 306 0 0 0 chr11 80020970 80021004 -68762468 + (TG)n Simple_repeat Simple_repeat 2 35 0 337 323 138 0 chr11 80021023 80021190 -68762282 - L3 LINE CR1 -429 1148 959 225 0 0 0 chr11 80021238 80021263 -68762209 + (TG)n Simple_repeat Simple_repeat 1 25 0 228 386 26 0 chr11 80021313 80021427 -68762045 - L2 LINE L2 -328 2985 2869 396 319 85 21 chr11 80021454 80021642 -68761830 + MIR SINE MIR 29 228 -34 2061 122 3 3 chr11 80021690 80021984 -68761488 - AluSx SINE Alu -18 294 1 228 375 144 0 chr11 80021984 80022144 -68761328 + L3 LINE CR1 1368 1550 -27 523 324 98 11 chr11 80022156 80022431 -68761041 - L3 LINE CR1 -330 1247 949 308 306 0 0 chr11 80022766 80022851 -68760621 - MIR3 SINE MIR -6 202 118 255 282 71 12 chr11 80023220 80023305 -68760167 + MIR3 SINE MIR 112 201 -7 181 352 38 19 chr11 80024453 80024558 -68758914 + L3b LINE CR1 1279 1385 -198 2279 102 0 0 chr11 80024651 80024954 -68758518 - AluSx SINE Alu -9 303 1 205 179 0 0 chr11 80025188 80025227 -68758245 - MIR3 SINE MIR -11 197 159 591 201 41 35 chr11 80025337 80025506 -68757966 - L1MB7 LINE L1 -54 6130 5961 363 237 62 10 chr11 80025508 80025605 -68757867 - MIR SINE MIR -73 135 34 436 212 35 0 chr11 80025855 80025968 -68757504 + L2 LINE L2 2957 3073 -240 852 228 0 0 chr11 80025975 80026142 -68757330 + AluJb SINE Alu 138 304 -8 489 328 6 6 chr11 80026224 80026395 -68757077 + L2 LINE L2 3125 3295 -18 183 80 0 0 chr11 80026396 80026421 -68757051 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 207 327 18 45 chr11 80027116 80027226 -68756246 - MIR SINE MIR -79 129 23 410 290 62 48 chr11 80027282 80027427 -68756045 - MIR3 SINE MIR -48 160 23 242 313 0 12 chr11 80028436 80028519 -68754953 + MIR SINE MIR 176 257 -5 261 272 88 48 chr11 80028876 80029001 -68754471 - MIR3 SINE MIR -6 202 73 485 291 55 50 chr11 80029563 80029745 -68753727 - MIR SINE MIR -58 204 22 727 188 57 32 chr11 80030031 80030221 -68753251 + MIR SINE MIR 35 230 -32 770 187 105 0 chr11 80030324 80030495 -68752977 - MER5A DNA MER1_type 0 189 1 242 115 39 0 chr11 80031017 80031069 -68752403 + Alu SINE Alu 248 301 0 664 246 0 60 chr11 80031071 80031207 -68752265 + MER63A DNA MER1_type 39 163 -1525 2141 104 0 3 chr11 80031207 80031495 -68751977 - AluSx SINE Alu -21 291 5 664 246 0 60 chr11 80031495 80031541 -68751931 + MER63A DNA MER1_type 163 210 0 843 269 4 8 chr11 80031558 80031796 -68751676 + L1ME3A LINE L1 5660 5896 -274 421 258 8 0 chr11 80031852 80031972 -68751500 + L1ME3A LINE L1 6045 6165 -5 346 206 0 0 chr11 80032178 80032246 -68751226 + MER53 DNA DNA 122 189 0 273 216 0 0 chr11 80032444 80032495 -68750977 - L2 LINE L2 0 3272 3222 452 276 70 85 chr11 80032531 80032872 -68750600 + L2 LINE L2 2934 3269 -3 180 125 0 0 chr11 80033885 80033917 -68749555 + (TCCA)n Simple_repeat Simple_repeat 3 34 0 338 349 96 20 chr11 80033953 80034151 -68749321 + MIR SINE MIR 17 229 -33 2758 191 95 93 chr11 80034153 80034731 -68748741 + MER69B DNA AcHobo 4 580 -1946 1703 161 0 43 chr11 80034731 80035030 -68748442 + AluJb SINE Alu 7 292 -20 2758 191 95 93 chr11 80035030 80035112 -68748360 + MER69B DNA AcHobo 580 660 -1866 1653 181 3 7 chr11 80035112 80035431 -68748041 + AluJb SINE Alu 1 312 0 2758 191 95 93 chr11 80035431 80035443 -68748029 + MER69B DNA AcHobo 660 670 -1856 2215 112 0 22 chr11 80035443 80035757 -68747715 + AluSx SINE Alu 6 312 0 2758 191 95 93 chr11 80035757 80036002 -68747470 + MER69B DNA AcHobo 670 924 -302 1443 100 9 45 chr11 80036007 80036227 -68747245 + AluSq SINE Alu 3 214 -99 329 145 0 0 chr11 80036227 80036289 -68747183 - MER69 DNA AcHobo -1983 543 482 2233 143 69 5 chr11 80036312 80036718 -68746754 + LTR47A LTR ERVL 21 452 0 1800 168 0 3 chr11 80036952 80037249 -68746223 + AluJo SINE Alu 5 300 -12 467 284 30 15 chr11 80037272 80037406 -68746066 - MIR SINE MIR -111 151 16 189 247 253 6 chr11 80037621 80037783 -68745689 - MIR3 SINE MIR -4 204 3 333 359 29 38 chr11 80038002 80038211 -68745261 + L3 LINE CR1 1300 1506 -71 188 239 22 0 chr11 80038740 80038786 -68744686 + MIR SINE MIR 99 145 -63 346 335 146 19 chr11 80039510 80039668 -68743804 + MIR SINE MIR 15 192 -70 2288 99 3 3 chr11 80039810 80040123 -68743349 - AluSp SINE Alu 0 313 1 743 302 22 22 chr11 80040330 80040562 -68742910 - MIR SINE MIR -3 259 28 2169 128 0 0 chr11 80040731 80041044 -68742428 - AluSp SINE Alu 0 313 1 378 303 8 33 chr11 80041274 80041396 -68742076 + MER5A DNA MER1_type 3 121 -68 229 311 136 19 chr11 80041463 80041566 -68741906 + MIR SINE MIR 89 203 -59 2164 122 0 0 chr11 80041628 80041931 -68741541 - AluSx SINE Alu -9 303 1 2230 110 7 0 chr11 80041995 80042294 -68741178 + AluSg SINE Alu 1 301 -9 255 282 71 12 chr11 80043641 80043726 -68739746 - MIR3 SINE MIR -7 201 112 308 306 0 0 chr11 80044095 80044180 -68739292 + MIR3 SINE MIR 118 202 -6 523 324 98 11 chr11 80044516 80044791 -68738681 + L3 LINE CR1 949 1247 -330 228 375 144 0 chr11 80044803 80044963 -68738509 - L3 LINE CR1 -27 1550 1368 2026 122 3 7 chr11 80044963 80045258 -68738214 + AluSx SINE Alu 1 294 -18 396 319 85 21 chr11 80045306 80045494 -68737978 - MIR SINE MIR -34 228 29 228 386 26 0 chr11 80045521 80045635 -68737837 + L2 LINE L2 2869 2985 -328 225 0 0 0 chr11 80045685 80045710 -68737762 + (CA)n Simple_repeat Simple_repeat 1 25 0 337 323 138 0 chr11 80045758 80045925 -68737547 + L3 LINE CR1 959 1148 -429 306 0 0 0 chr11 80045944 80045978 -68737494 + (CA)n Simple_repeat Simple_repeat 2 35 0 230 301 12 12 chr11 80046257 80046340 -68737132 - MIR3 SINE MIR -17 191 109 283 359 30 15 chr11 80047358 80047489 -68735983 - MIR3 SINE MIR -1 207 75 203 301 133 30 chr11 80047777 80047980 -68735492 - L2 LINE L2 -337 2977 2754 603 316 59 0 chr11 80048897 80049084 -68734388 + MIR SINE MIR 59 256 -6 1226 153 0 44 chr11 80049768 80049824 -68733648 + AluJo SINE Alu 91 148 -164 2137 97 28 0 chr11 80049824 80050112 -68733360 + AluY SINE Alu 1 296 -15 1226 153 0 44 chr11 80050112 80050283 -68733189 + AluJo SINE Alu 148 308 -4 334 379 37 12 chr11 80050486 80050647 -68732825 + MIR SINE MIR 79 243 -19 373 294 48 68 chr11 80051244 80051356 -68732116 + MIR SINE MIR 48 159 -103 2154 120 0 7 chr11 80051356 80051657 -68731815 + AluSx SINE Alu 2 300 -12 373 294 48 68 chr11 80051657 80051734 -68731738 + MIR SINE MIR 159 236 -26 821 238 111 10 chr11 80052369 80052667 -68730805 + LTR16A LTR ERVL 66 393 -57 367 319 112 9 chr11 80052778 80052894 -68730578 + L2 LINE L2 3181 3308 -5 1744 109 24 100 chr11 80052924 80053253 -68730219 - AluYb8 SINE Alu -14 304 1 523 310 200 17 chr11 80053441 80054096 -68729376 - L2 LINE L2 -367 2947 2173 203 287 102 9 chr11 80054058 80054166 -68729306 + L2 LINE L2 3151 3268 -4 * 413 165 33 0 chr11 80054173 80054294 -68729178 + (TGGA)n Simple_repeat Simple_repeat 1 125 0 200 287 130 37 chr11 80054309 80054417 -68729055 + L2 LINE L2 3139 3256 -16 245 327 58 0 chr11 80054630 80054734 -68728738 - MIR SINE MIR -114 148 39 354 45 0 0 chr11 80055363 80055407 -68728065 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 301 323 61 61 chr11 80055422 80055620 -68727852 - L2 LINE L2 -45 3227 3030 2093 132 3 0 chr11 80056922 80057218 -68726254 + AluSx SINE Alu 1 297 -15 2293 95 3 0 chr11 80057220 80057524 -68725948 + AluSg SINE Alu 1 305 -5 1720 158 37 0 chr11 80057989 80058286 -68725186 - AluJb SINE Alu -4 308 1 512 290 59 16 chr11 80058769 80058955 -68724517 + MIR SINE MIR 38 231 -31 311 331 28 14 chr11 80059631 80059773 -68723699 + MIR3 SINE MIR 62 205 -3 191 317 40 68 chr11 80060027 80060276 -68723196 + L2 LINE L2 2607 2848 -466 400 141 84 0 chr11 80060339 80060410 -68723062 + MADE1 DNA Mariner 1 77 -3 2249 98 0 0 chr11 80060418 80060715 -68722757 - AluSg SINE Alu -13 297 1 1888 130 10 0 chr11 80060782 80061075 -68722397 + AluSx SINE Alu 1 296 -16 195 311 25 84 chr11 80061183 80061302 -68722170 + L2 LINE L2 3076 3187 -85 188 125 0 100 chr11 80061332 80061372 -68722100 - L2 LINE L2 -9 3304 3269 184 279 66 16 chr11 80061345 80061406 -68722066 - MIR SINE MIR -12 250 187 * 357 265 128 0 chr11 80062069 80062186 -68721286 - MIR SINE MIR -109 153 22 274 275 231 36 chr11 80062597 80062844 -68720628 + L2 LINE L2 2813 3107 -165 408 252 57 16 chr11 80063464 80063587 -68719885 - MER5A DNA MER1_type -7 182 55 220 299 213 17 chr11 80063659 80063833 -68719639 + MIR SINE MIR 5 212 -50 194 222 0 0 chr11 80064140 80064176 -68719296 + MIR SINE MIR 44 79 -129 5296 75 21 0 chr11 80064185 80064862 -68718610 + LTR8 LTR ERV1 1 691 0 661 210 75 75 chr11 80065536 80065722 -68717750 + HAL1 LINE L1 209 394 -2113 273 167 130 0 chr11 80065762 80065816 -68717656 + HAL1 LINE L1 634 694 -1813 628 234 87 23 chr11 80065840 80066058 -68717414 + HAL1 LINE L1 773 1004 -1503 1111 247 131 26 chr11 80066063 80066451 -68717021 + HAL1 LINE L1 1536 1964 -543 361 244 26 26 chr11 80066463 80066578 -68716894 + HAL1 LINE L1 2066 2180 -327 224 109 22 43 chr11 80066711 80066757 -68716715 + L2 LINE L2 3269 3313 0 183 288 25 62 chr11 80066937 80067017 -68716455 + MIR SINE MIR 80 156 -106 204 0 26 53 chr11 80067556 80067594 -68715878 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 289 234 53 11 chr11 80067622 80067716 -68715756 + L1ME3A LINE L1 6068 6165 -5 1795 103 51 67 chr11 80067739 80068051 -68715421 + AluSg SINE Alu 1 307 -3 435 246 134 7 chr11 80068622 80068764 -68714708 - MIR3 SINE MIR -38 170 11 2306 81 0 3 chr11 80069614 80069911 -68713561 - AluSx SINE Alu -16 296 1 388 269 29 0 chr11 80070288 80070392 -68713080 + MIR SINE MIR 76 182 -80 634 286 63 50 chr11 80070492 80070730 -68712742 + MIR SINE MIR 8 248 -14 254 320 10 0 chr11 80071844 80071941 -68711531 + L2 LINE L2 3205 3302 -11 1866 142 0 42 chr11 80072147 80072312 -68711160 - AluJb SINE Alu -14 298 151 2010 100 17 10 chr11 80072312 80072612 -68710860 - AluY SINE Alu -9 302 1 1866 142 0 42 chr11 80072612 80072757 -68710715 - AluJb SINE Alu -161 151 1 213 154 0 0 chr11 80072814 80072853 -68710619 + (TA)n Simple_repeat Simple_repeat 1 39 0 1595 163 24 31 chr11 80072854 80073012 -68710460 - AluJb SINE Alu -20 292 134 243 0 0 0 chr11 80073012 80073039 -68710433 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 2062 113 0 0 chr11 80073039 80073323 -68710149 - AluSq SINE Alu -29 284 1 1595 163 24 31 chr11 80073323 80073457 -68710015 - AluJb SINE Alu -176 136 1 394 162 29 0 chr11 80073651 80073719 -68709753 - MER58B DNA MER1_type 0 341 272 580 121 0 12 chr11 80073719 80073802 -68709670 - AluJ/FLAM SINE Alu -228 84 3 762 266 21 59 chr11 80073803 80073989 -68709483 - MER58B DNA MER1_type -60 281 89 1768 138 0 0 chr11 80073989 80074250 -68709222 + AluSx SINE Alu 9 269 -43 207 69 0 0 chr11 80074260 80074289 -68709183 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 762 266 21 59 chr11 80074289 80074380 -68709092 - MER58B DNA MER1_type -261 80 4 318 275 0 0 chr11 80074382 80074462 -68709010 + L1MC/D LINE L1 5710 5789 -2019 1881 116 54 0 chr11 80074813 80075090 -68708382 + AluSx SINE Alu 1 292 -20 231 245 28 57 chr11 80075145 80075251 -68708221 + MER103 DNA DNA 8 110 -56 8020 134 38 52 chr11 80075307 80076850 -68706622 + MSTA-int LTR MaLR 1 1580 0 2173 139 93 13 chr11 80076850 80077246 -68706226 + MSTA LTR MaLR 1 428 0 324 0 0 0 chr11 80077331 80077367 -68706105 + (CA)n Simple_repeat Simple_repeat 2 37 0 1592 160 32 42 chr11 80078300 80078612 -68704860 - AluJb SINE Alu -3 309 1 2067 91 4 0 chr11 80079260 80079536 -68703936 + AluSx SINE Alu 1 277 -35 199 176 47 129 chr11 80079702 80079787 -68703685 - L2 LINE L2 0 3313 3236 230 260 41 14 chr11 80079808 80079881 -68703591 + MIR SINE MIR 77 151 -111 870 112 0 0 chr11 80079924 80080049 -68703423 - FLAM_C SINE Alu -18 125 1 180 299 35 46 chr11 80080146 80080233 -68703239 - MIR3 SINE MIR -14 194 109 195 302 19 0 chr11 80080702 80080755 -68702717 - MIR SINE MIR -67 141 88 777 300 45 4 chr11 80080809 80081052 -68702420 - MIR SINE MIR 0 262 10 962 147 95 57 chr11 80081053 80081264 -68702208 - MER20 DNA MER1_type 0 219 1 339 258 67 58 chr11 80081402 80081522 -68701950 - MIR SINE MIR -114 148 28 234 214 31 44 chr11 80081563 80081659 -68701813 + HsTC2 DNA Tc2 1 1813 -85 311 288 72 29 chr11 80082005 80082144 -68701328 - MIR SINE MIR -59 203 59 248 208 135 73 chr11 80082318 80082414 -68701058 - MIR SINE MIR -89 119 18 1759 179 3 0 chr11 80082689 80082997 -68700475 + AluJb SINE Alu 1 309 -3 241 135 0 0 chr11 80083283 80083320 -68700152 + L2 LINE L2 3261 3297 -16 2187 97 10 3 chr11 80083934 80084242 -68699230 - AluSq SINE Alu -3 310 1 202 348 57 7 chr11 80084340 80084481 -68698991 + L2 LINE L2 2767 2914 -400 * 512 288 314 28 chr11 80084479 80085044 -68698428 - L2 LINE L2 -3 3310 2551 196 200 0 67 chr11 80085075 80085120 -68698352 - L2 LINE L2 -244 3028 2987 330 224 93 9 chr11 80085302 80085409 -68698063 - L1ME4a LINE L1 -37 6084 5969 495 284 216 5 chr11 80085464 80085654 -68697818 + MIR SINE MIR 33 262 0 301 269 170 18 chr11 80086028 80086199 -68697273 + MIR3 SINE MIR 9 205 -3 503 180 40 0 chr11 80087044 80087144 -68696328 - MER94 DNA DNA -30 104 1 502 255 174 0 chr11 80087404 80087565 -68695907 + MIR SINE MIR 52 240 -22 319 274 96 22 chr11 80088802 80088937 -68694535 + MIR SINE MIR 48 192 -70 296 239 14 14 chr11 80089547 80089618 -68693854 + L2 LINE L2 3236 3306 -7 886 217 278 18 chr11 80089851 80090250 -68693222 + MLT1H LTR MaLR 1 546 -3 308 151 280 21 chr11 80090252 80090345 -68693127 - MIR SINE MIR -67 195 79 747 126 22 59 chr11 80094045 80094180 -68689292 - FLAM_C SINE Alu -3 130 1 342 262 137 71 chr11 80094291 80094476 -68688996 - MIR SINE MIR -62 146 2 271 250 98 54 chr11 80094567 80094679 -68688793 - MIR3 SINE MIR -47 161 45 1986 101 23 13 chr11 80094728 80095034 -68688438 + AluSq SINE Alu 5 313 0 324 296 96 24 chr11 80095074 80095199 -68688273 + L2 LINE L2 3121 3254 -18 2062 121 0 7 chr11 80095465 80095772 -68687700 + AluSx SINE Alu 1 305 -7 2089 96 0 0 chr11 80095809 80096126 -68687346 + AluSg SINE Alu 1 317 0 451 235 146 81 chr11 80096481 80096728 -68686744 + MLT-int LTR MaLR 1472 1734 -1 750 141 15 52 chr11 80100354 80100489 -68682983 - FLAM_C SINE Alu -3 130 1 342 262 137 71 chr11 80100600 80100785 -68682687 - MIR SINE MIR -62 146 2 271 250 98 54 chr11 80100876 80100988 -68682484 - MIR3 SINE MIR -47 161 45 2199 91 3 0 chr11 80101037 80101324 -68682148 + AluSg SINE Alu 5 292 -18 238 359 125 11 chr11 80101877 80102061 -68681411 + L2 LINE L2 2554 2758 -556 641 178 32 57 chr11 80102211 80102368 -68681104 + MIR SINE MIR 108 260 -2 186 294 0 59 chr11 80102431 80102499 -68680973 + L2 LINE L2 2991 3054 -218 823 181 50 6 chr11 80103845 80104005 -68679467 - MER2 DNA MER2_type -25 320 154 2329 73 3 0 chr11 80104065 80104365 -68679107 + AluSp SINE Alu 2 302 -11 1401 149 66 4 chr11 80104365 80104607 -68678865 - MER2 DNA MER2_type -79 266 10 277 296 89 25 chr11 80104655 80104935 -68678537 + HAL1 LINE L1 1237 1534 -973 676 268 232 18 chr11 80104986 80105378 -68678094 + L1M4 LINE L1 2805 3280 -2866 808 299 156 32 chr11 80105429 80105825 -68677647 + L1M4 LINE L1 3530 3875 -2271 1650 179 0 10 chr11 80105825 80106127 -68677345 + AluJo SINE Alu 1 299 -13 808 299 156 32 chr11 80106127 80106348 -68677124 + L1M4 LINE L1 3875 4223 -1923 405 286 93 48 chr11 80106774 80106857 -68676615 + L1M4 LINE L1 4581 4659 -1487 1928 122 11 0 chr11 80106857 80107144 -68676328 + AluSx SINE Alu 10 299 -13 405 286 93 48 chr11 80107144 80107479 -68675993 + L1M4 LINE L1 4659 5018 -1128 483 267 0 47 chr11 80108803 80108953 -68674519 + MIR3 SINE MIR 18 160 -48 1847 182 0 3 chr11 80110162 80110470 -68673002 + AluJb SINE Alu 1 307 -5 716 169 0 66 chr11 80110671 80110807 -68672665 - FLAM_A SINE Alu -2 131 5 1893 132 6 60 chr11 80110891 80111209 -68672263 - AluSx SINE Alu -11 301 1 372 234 135 27 chr11 80111904 80112015 -68671457 - MIR3 SINE MIR -7 201 79 2032 118 6 42 chr11 80112303 80112616 -68670856 + AluSx SINE Alu 1 302 -10 225 0 0 0 chr11 80112661 80112686 -68670786 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1630 169 4 11 chr11 80112698 80112971 -68670501 - AluJb SINE Alu -21 291 21 234 320 150 20 chr11 80113414 80113561 -68669911 - MIR3 SINE MIR -9 199 34 2465 57 7 0 chr11 80113706 80114002 -68669470 + AluY SINE Alu 1 298 -13 206 158 0 0 chr11 80114109 80114147 -68669325 + L2 LINE L2 3190 3227 -86 346 179 382 0 chr11 80114236 80114359 -68669113 - MIR SINE MIR -16 246 77 2536 75 3 0 chr11 80114372 80114680 -68668792 - AluSp SINE Alu -4 309 1 1996 142 0 0 chr11 80114738 80115027 -68668445 - AluSx SINE Alu -23 289 1 1611 240 111 40 chr11 80115606 80116571 -68666901 + L1ME3 LINE L1 4484 5520 -644 927 142 175 0 chr11 80116572 80116755 -68666717 + L1ME3 LINE L1 5746 5960 -210 1853 226 42 54 chr11 80116757 80117309 -68666163 + MER68 LTR ERV1 1 545 -17 336 241 12 0 chr11 80117332 80117415 -68666057 + L1ME3 LINE L1 5971 6054 -108 370 275 65 65 chr11 80117464 80117664 -68665808 + L1ME3A LINE L1 5946 6145 -25 1984 125 3 17 chr11 80117664 80117961 -68665511 - AluJb SINE Alu -13 299 7 24 0 0 0 chr11 80117991 80118015 -68665457 + AT_rich Low_complexity Low_complexity 1 24 0 1027 84 0 0 chr11 80118018 80118149 -68665323 + AluSc SINE Alu 173 303 -6 266 273 23 0 chr11 80118149 80118250 -68665222 + (TA)n Simple_repeat Simple_repeat 1 103 0 380 316 141 0 chr11 80118360 80118566 -68664906 + L2 LINE L2 2539 2773 -541 248 305 0 92 chr11 80118586 80118727 -68664745 + L2 LINE L2 2928 3055 -217 351 293 211 12 chr11 80118844 80119100 -68664372 + L2 LINE L2 1646 1952 -1362 2245 102 13 0 chr11 80119110 80119414 -68664058 - AluSq SINE Alu -5 308 1 813 137 0 50 chr11 80119418 80119557 -68663915 - FLAM_C SINE Alu -1 132 1 755 228 0 0 chr11 80119732 80119877 -68663595 - FRAM SINE Alu -30 146 2 22 0 0 0 chr11 80119890 80119912 -68663560 + AT_rich Low_complexity Low_complexity 1 22 0 1712 181 21 3 chr11 80119914 80120202 -68663270 + AluJb SINE Alu 1 293 -19 275 290 86 68 chr11 80120288 80120450 -68663022 + MIR SINE MIR 89 253 -9 1395 167 9 0 chr11 80120452 80120674 -68662798 + AluJb SINE Alu 85 308 -4 1737 164 10 20 chr11 80120738 80121037 -68662435 + AluJb SINE Alu 1 296 -16 3751 163 134 11 chr11 80121066 80121899 -68661573 - Charlie1 DNA MER1_type 0 2761 1826 844 182 122 0 chr11 80121902 80122083 -68661389 - Charlie1 DNA MER1_type -2520 241 39 1722 145 161 7 chr11 80122084 80122394 -68661078 + MLT1A1 LTR MaLR 1 358 -7 1518 146 68 31 chr11 80123216 80123537 -68659935 + L1MB4 LINE L1 5847 6179 -1 308 100 100 0 chr11 80123554 80123604 -68659868 + L1MB8 LINE L1 6112 6166 -12 414 335 65 9 chr11 80123633 80123863 -68659609 + L3 LINE CR1 1248 1490 -87 183 42 0 0 chr11 80123922 80123946 -68659526 + (T)n Simple_repeat Simple_repeat 1 24 0 564 311 56 20 chr11 80124293 80124544 -68658928 + L2 LINE L2 2048 2307 -1007 3118 157 32 9 chr11 80124551 80125107 -68658365 - L1MB5 LINE L1 -9 6165 5597 1471 155 75 48 chr11 80125112 80125444 -68658028 - L1MB5 LINE L1 -737 5437 5099 1969 129 13 19 chr11 80125444 80125753 -68657719 + AluSx SINE Alu 1 307 -5 1471 155 75 48 chr11 80125753 80125892 -68657580 - L1MB5 LINE L1 -1075 5099 4965 2156 126 13 3 chr11 80125907 80126216 -68657256 - AluSx SINE Alu 0 312 1 325 197 311 8 chr11 80126218 80126340 -68657132 + L2 LINE L2 2301 2459 -855 566 152 30 10 chr11 80126341 80126440 -68657032 + AluJ/FLAM SINE Alu 2 102 -210 1064 240 141 30 chr11 80126446 80127186 -68656286 + L2 LINE L2 2446 3313 0 351 331 110 7 chr11 80127194 80127339 -68656133 + L2 LINE L2 3112 3271 -1 326 223 107 0 chr11 80127676 80127779 -68655693 - MIR3 SINE MIR -45 163 50 21 0 0 0 chr11 80128154 80128175 -68655297 + GC_rich Low_complexity Low_complexity 1 21 0 29 94 0 0 chr11 80128206 80128291 -68655181 + GC_rich Low_complexity Low_complexity 1 85 0 2268 102 0 3 chr11 80130813 80131107 -68652365 + AluSc SINE Alu 1 293 -16 2326 105 0 0 chr11 80131634 80131938 -68651534 - AluSx SINE Alu -8 304 1 1103 196 102 31 chr11 80134249 80134469 -68649003 - MER58B DNA MER1_type -2079 341 77 2216 91 28 0 chr11 80134469 80134754 -68648718 + AluSx SINE Alu 1 293 -19 1103 196 102 31 chr11 80134754 80134827 -68648645 - MER58B DNA MER1_type -2343 77 11 2131 123 0 7 chr11 80134954 80135254 -68648218 + AluJb SINE Alu 1 298 -14 226 313 35 26 chr11 80135486 80135601 -68647871 + MARNA DNA Mariner 421 536 -50 377 247 21 0 chr11 80135877 80135974 -68647498 - L2 LINE L2 -1 3312 3214 1142 242 155 15 chr11 80136202 80136537 -68646935 + L1ME4a LINE L1 5527 5908 -213 368 254 63 24 chr11 80137596 80137722 -68645750 + MIR SINE MIR 46 176 -86 321 219 154 49 chr11 80137725 80137848 -68645624 - L2 LINE L2 -1 3271 3136 2395 44 41 14 chr11 80137869 80138164 -68645308 + AluY SINE Alu 1 303 -8 213 321 0 64 chr11 80138165 80138274 -68645198 + MIR SINE MIR 147 248 -14 2446 96 0 0 chr11 80138987 80139290 -68644182 + AluSx SINE Alu 1 303 -9 314 287 28 28 chr11 80139745 80139853 -68643619 - MIR SINE MIR -74 134 27 6163 88 8 21 chr11 80141108 80141271 -68642201 - L1MA3 LINE L1 -2 6303 6139 234 0 0 0 chr11 80141271 80141297 -68642175 + (TTA)n Simple_repeat Simple_repeat 2 27 0 2096 114 14 0 chr11 80141297 80141578 -68641894 - AluSx SINE Alu -27 285 1 6163 88 8 21 chr11 80141578 80142297 -68641175 - L1MA3 LINE L1 -164 6141 5432 249 362 87 0 chr11 80142346 80142484 -68640988 + L2 LINE L2 3122 3271 -1 1177 167 17 30 chr11 80142503 80142737 -68640735 - L1MB5 LINE L1 0 6174 5944 1536 167 21 48 chr11 80142739 80143069 -68640403 - L1MD3 LINE L1 -966 7029 6709 898 218 175 12 chr11 80143067 80143483 -68639989 - L1MEc LINE L1 -5372 1024 385 * 237 239 162 28 chr11 80143517 80143659 -68639813 - L1MEd LINE L1 -3710 2672 2512 1751 165 3 7 chr11 80143674 80143995 -68639477 - AluJb SINE Alu 0 322 3 2641 151 99 8 chr11 80144078 80144377 -68639095 - L1MB7 LINE L1 -16 6168 5805 2321 101 7 7 chr11 80144377 80144684 -68638788 - AluSc SINE Alu -2 307 1 2641 151 99 8 chr11 80144684 80144880 -68638592 - L1MB7 LINE L1 -379 5805 5628 1390 236 74 36 chr11 80144907 80145235 -68638237 + MER63B DNA MER1_type 1 350 -712 2121 134 3 6 chr11 80145235 80145548 -68637924 + AluSx SINE Alu 1 312 0 1390 236 74 36 chr11 80145548 80145638 -68637834 + MER63B DNA MER1_type 350 435 -1 2103 119 6 28 chr11 80145678 80145996 -68637476 - AluSx SINE Alu -1 311 1 738 181 0 0 chr11 80146017 80146144 -68637328 - FLAM_C SINE Alu -6 127 1 354 276 103 25 chr11 80146226 80146469 -68637003 - L1MEd LINE L1 -4702 1682 1421 411 68 0 0 chr11 80146478 80146537 -68636935 + (TTTTA)n Simple_repeat Simple_repeat 3 61 0 2214 102 0 7 chr11 80146539 80146822 -68636650 - AluSx SINE Alu -28 284 4 1904 189 25 105 chr11 80146881 80147390 -68636082 + MLT2B1 LTR ERVL 3 466 -54 387 0 0 0 chr11 80147390 80147433 -68636039 + (CA)n Simple_repeat Simple_repeat 2 44 0 1904 189 25 105 chr11 80147433 80147474 -68635998 + MLT2B1 LTR ERVL 466 509 -11 2315 110 0 3 chr11 80147488 80147797 -68635675 - AluSq SINE Alu -5 308 1 2339 102 3 3 chr11 80147798 80148103 -68635369 - AluSx SINE Alu -7 305 1 523 281 67 109 chr11 80148114 80148425 -68635047 - L1MEd LINE L1 -4976 1396 1073 836 168 0 0 chr11 80148425 80148556 -68634916 - FLAM_C SINE Alu -2 131 1 523 281 67 109 chr11 80148556 80148876 -68634596 - L1MEd LINE L1 -5299 1073 741 2446 97 3 0 chr11 80148876 80149187 -68634285 + AluSq SINE Alu 2 313 0 523 281 67 109 chr11 80149187 80149636 -68633836 - L1MEd LINE L1 -5631 741 361 2329 111 0 0 chr11 80149653 80149960 -68633512 + AluSx SINE Alu 1 307 -5 1801 155 40 0 chr11 80150425 80150721 -68632751 - AluJb SINE Alu -4 308 1 437 290 59 16 chr11 80151204 80151390 -68632082 + MIR SINE MIR 38 231 -31 256 331 28 14 chr11 80152066 80152208 -68631264 + MIR3 SINE MIR 62 205 -3 426 127 84 0 chr11 80152774 80152845 -68630627 + MADE1 DNA Mariner 1 77 -3 2352 98 0 0 chr11 80152853 80153148 -68630324 - AluSg SINE Alu -13 297 3 180 0 0 0 chr11 80153295 80153315 -68630157 + (C)n Simple_repeat Simple_repeat 1 20 0 984 263 90 45 chr11 80153353 80153857 -68629615 + L1ME4a LINE L1 5593 6117 -4 232 340 35 66 chr11 80153926 80154123 -68629349 - L2 LINE L2 -97 3175 2985 196 322 133 0 chr11 80154650 80154740 -68628732 - L3 LINE CR1 -7 1570 1469 461 323 48 5 chr11 80154928 80155114 -68628358 - L2 LINE L2 0 3313 3120 277 330 35 0 chr11 80155114 80155229 -68628243 - L2 LINE L2 -318 2995 2877 193 373 0 0 chr11 80155284 80155343 -68628129 + L2 LINE L2 3008 3066 -206 212 306 106 0 chr11 80155466 80155551 -68627921 + L2 LINE L2 3167 3260 -12 238 314 75 72 chr11 80155623 80155739 -68627733 - MIR SINE MIR -13 249 135 1679 153 12 4 chr11 80155739 80155994 -68627478 + AluJo SINE Alu 1 257 -55 238 314 75 72 chr11 80155994 80156114 -68627358 - MIR SINE MIR -127 135 16 200 271 43 14 chr11 80157180 80157250 -68626222 - MIR3 SINE MIR -49 159 88 453 232 40 81 chr11 80157444 80157642 -68625830 + MIR SINE MIR 20 209 -53 384 307 88 95 chr11 80157871 80158281 -68625191 - L2 LINE L2 -6 3266 2860 482 269 6 51 chr11 80159178 80159334 -68624138 + MIR SINE MIR 47 195 -67 442 332 22 32 chr11 80159503 80159780 -68623692 - L1ME LINE L1 -312 5809 5536 676 223 62 33 chr11 80160401 80160612 -68622860 - HAL1 LINE L1 -13 2494 2278 22 56 0 0 chr11 80160612 80160648 -68622824 + AT_rich Low_complexity Low_complexity 1 36 0 423 255 38 13 chr11 80161310 80161467 -68622005 + HAL1 LINE L1 1980 2140 -367 473 123 27 0 chr11 80161740 80161813 -68621659 + MER3 DNA MER1_type 135 209 0 409 133 17 0 chr11 80161761 80161821 -68621651 - MER3 DNA MER1_type -109 100 40 * 433 287 107 35 chr11 80162031 80162292 -68621180 - LTR40b LTR ERVL -48 414 135 34 79 0 0 chr11 80162727 80162803 -68620669 + AT_rich Low_complexity Low_complexity 1 76 0 366 367 10 5 chr11 80162810 80163017 -68620455 + ERVL LTR ERVL 455 662 -5102 2009 151 0 10 chr11 80163880 80164192 -68619280 + AluJb SINE Alu 1 309 -3 189 0 0 0 chr11 80164340 80164361 -68619111 + (A)n Simple_repeat Simple_repeat 1 21 0 4459 156 35 1 chr11 80164361 80165170 -68618302 + L1MA4 LINE L1 5461 6296 -4 352 160 25 118 chr11 80165452 80165498 -68617974 - MIR SINE MIR -117 145 96 1931 143 0 0 chr11 80165498 80165777 -68617695 + AluSx SINE Alu 1 279 -33 234 0 0 0 chr11 80165777 80165803 -68617669 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 352 160 25 118 chr11 80165803 80165874 -68617598 - MIR SINE MIR -164 98 38 248 328 82 0 chr11 80166302 80166436 -68617036 - MIR SINE MIR -45 217 73 633 250 91 26 chr11 80166439 80166490 -68616982 - MIR SINE MIR -2 260 214 1686 239 119 30 chr11 80166490 80167055 -68616417 + MLT1L LTR MaLR 1 615 0 633 250 91 26 chr11 80167055 80167235 -68616237 - MIR SINE MIR -48 214 14 2173 132 0 0 chr11 80167556 80167851 -68615621 + AluSx SINE Alu 1 295 -17 202 307 13 13 chr11 80168000 80168075 -68615397 + L3 LINE CR1 1478 1552 -25 180 0 0 0 chr11 80168532 80168552 -68614920 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2261 100 0 0 chr11 80168557 80168837 -68614635 - AluSx SINE Alu -31 281 2 220 331 57 45 chr11 80168925 80169082 -68614390 - L2 LINE L2 -534 2780 2622 849 273 218 0 chr11 80169958 80170339 -68613133 - Charlie8 DNA MER1_type -1953 464 1 418 354 62 0 chr11 80171148 80171292 -68612180 - L2 LINE L2 -4 3268 3116 272 324 36 9 chr11 80171365 80171476 -68611996 - MIR SINE MIR -138 124 11 996 216 154 52 chr11 80171552 80171594 -68611878 + MLT2E LTR ERVL 66 102 -526 2408 90 0 3 chr11 80171594 80171894 -68611578 + AluSg SINE Alu 1 299 -11 996 216 154 52 chr11 80171894 80172175 -68611297 + MLT2E LTR ERVL 102 422 -206 408 238 20 0 chr11 80172226 80172327 -68611145 + MLT2E LTR ERVL 518 620 -8 1856 172 13 0 chr11 80172346 80172649 -68610823 + AluJb SINE Alu 3 309 -3 554 183 22 22 chr11 80172664 80172869 -68610603 + GA-rich Low_complexity Low_complexity 1 205 0 199 292 0 31 chr11 80173860 80173956 -68609516 - MIR SINE MIR 0 262 170 699 190 0 0 chr11 80173957 80174114 -68609358 + FLAM_C SINE Alu 2 158 0 269 291 146 10 chr11 80174133 80174236 -68609236 - MIR3 SINE MIR -77 131 15 206 281 43 72 chr11 80175725 80175864 -68607608 + L2 LINE L2 2919 3053 -219 263 300 100 77 chr11 80175983 80176031 -68607441 + L2 LINE L2 3138 3183 -89 1758 149 0 77 chr11 80176031 80176215 -68607257 - AluJb SINE Alu -14 298 148 2061 106 21 3 chr11 80176215 80176498 -68606974 - AluSx SINE Alu -24 288 1 1758 149 0 77 chr11 80176498 80176636 -68606836 - AluJb SINE Alu -164 148 1 263 300 100 77 chr11 80176636 80176717 -68606755 + L2 LINE L2 3183 3270 -2 497 271 132 0 chr11 80177041 80177185 -68606287 + MIR3 SINE MIR 33 195 -13 198 103 0 0 chr11 80177407 80177436 -68606036 + (T)n Simple_repeat Simple_repeat 1 29 0 259 211 0 156 chr11 80177545 80177611 -68605861 - MLT2E LTR ERVL -471 157 113 2392 91 0 3 chr11 80177611 80177909 -68605563 - AluSg SINE Alu -13 297 1 259 211 0 156 chr11 80177909 80177951 -68605521 - MLT2E LTR ERVL -515 113 66 272 324 36 9 chr11 80178027 80178138 -68605334 + MIR SINE MIR 11 124 -138 418 354 62 0 chr11 80178211 80178355 -68605117 + L2 LINE L2 3116 3268 -4 849 273 218 0 chr11 80179164 80179545 -68603927 + Charlie8 DNA MER1_type 1 464 -1953 192 333 64 45 chr11 80180421 80180577 -68602895 + L2 LINE L2 2622 2780 -534 2261 100 0 0 chr11 80180665 80180945 -68602527 + AluSx SINE Alu 2 281 -31 180 0 0 0 chr11 80180950 80180970 -68602502 + (CAA)n Simple_repeat Simple_repeat 2 21 0 202 307 13 13 chr11 80181427 80181502 -68601970 - L3 LINE CR1 -25 1552 1478 1440 152 0 0 chr11 80181651 80181862 -68601610 - AluJb SINE Alu -17 295 85 275 290 86 68 chr11 80181864 80182026 -68601446 - MIR SINE MIR -9 253 89 1742 177 21 3 chr11 80182112 80182400 -68601072 - AluJb SINE Alu -19 293 1 22 0 0 0 chr11 80182402 80182424 -68601048 + AT_rich Low_complexity Low_complexity 1 22 0 755 228 0 0 chr11 80182437 80182582 -68600890 + FRAM SINE Alu 2 146 -30 791 144 0 50 chr11 80182756 80182895 -68600577 + FLAM_C SINE Alu 1 132 -1 2228 98 14 0 chr11 80182899 80183194 -68600278 + AluSq SINE Alu 1 299 -14 1070 153 116 16 chr11 80183357 80183546 -68599926 - AluJb SINE Alu -20 292 85 2395 71 0 0 chr11 80183554 80183876 -68599596 - AluSg SINE Alu 0 322 1 2742 164 24 52 chr11 80183897 80184098 -68599374 - MLT2B1 LTR ERVL 0 520 315 1735 186 0 16 chr11 80184098 80184405 -68599067 - AluJo SINE Alu -10 302 1 2742 164 24 52 chr11 80184405 80184738 -68598734 - MLT2B1 LTR ERVL -205 315 1 201 74 0 0 chr11 80184745 80184772 -68598700 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 789 118 0 0 chr11 80184773 80184883 -68598589 - HY1 scRNA scRNA -2 110 1 276 253 27 0 chr11 80184883 80184958 -68598514 - MIR SINE MIR -115 147 71 250 200 46 15 chr11 80185824 80185889 -68597583 - MLT1L LTR MaLR -328 287 221 1662 137 15 30 chr11 80186322 80186592 -68596880 - AluJo SINE Alu -46 266 1 1868 173 0 0 chr11 80186602 80186903 -68596569 - AluJb SINE Alu -11 301 1 727 243 92 36 chr11 80187122 80187357 -68596115 + MARNA DNA Mariner 214 472 -114 2307 84 0 0 chr11 80187357 80187681 -68595791 + AluY SINE Alu 1 324 0 727 243 92 36 chr11 80187681 80187749 -68595723 + MARNA DNA Mariner 472 535 -51 2375 98 3 0 chr11 80187930 80188236 -68595236 + AluSg SINE Alu 3 309 -1 2727 207 72 53 chr11 80188448 80189152 -68594320 - L1MDa LINE L1 -5806 734 17 566 198 152 2 chr11 80189188 80189418 -68594054 + L1ME1 LINE L1 5167 5436 -730 734 155 0 0 chr11 80189478 80189594 -68593878 + FAM SINE Alu 57 172 -13 2561 216 103 2 chr11 80189604 80190214 -68593258 + L1ME1 LINE L1 5439 6110 -56 2173 111 0 0 chr11 80190214 80190512 -68592960 + AluY SINE Alu 2 299 -12 333 231 65 0 chr11 80190666 80190774 -68592698 + MIR SINE MIR 82 196 -66 1352 210 104 34 chr11 80190964 80191321 -68592151 + MLT1F LTR MaLR 159 540 -2 2312 78 20 0 chr11 80191520 80191814 -68591658 - AluSp SINE Alu -13 300 1 730 263 84 5 chr11 80191944 80192157 -68591315 + MIR SINE MIR 33 262 0 2222 114 0 16 chr11 80192236 80192542 -68590930 - AluSx SINE Alu -11 301 1 341 281 180 7 chr11 80192830 80192969 -68590503 + MER5A DNA MER1_type 27 189 0 * 770 266 36 18 chr11 80192969 80193024 -68590448 + MIR SINE MIR 17 69 -193 2251 105 0 3 chr11 80193024 80193319 -68590153 - AluSx SINE Alu -8 304 11 770 266 36 18 chr11 80193319 80193483 -68589989 + MIR SINE MIR 69 240 -22 319 281 43 54 chr11 80193625 80193810 -68589662 + MIR SINE MIR 28 210 -52 198 103 0 0 chr11 80195940 80195969 -68587503 + (TTCA)n Simple_repeat Simple_repeat 3 31 0 366 156 0 0 chr11 80196192 80196256 -68587216 + (TA)n Simple_repeat Simple_repeat 1 64 0 329 48 24 0 chr11 80196256 80196298 -68587174 - U6 snRNA snRNA -64 43 1 253 242 270 22 chr11 80196431 80196609 -68586863 - MIR SINE MIR -34 228 7 251 411 39 8 chr11 80196955 80197084 -68586388 + L2 LINE L2 3111 3243 -29 1110 144 30 20 chr11 80197498 80197700 -68585772 + MER105 DNA DNA 1 204 0 1929 174 0 3 chr11 80200379 80200684 -68582788 - AluJb SINE Alu -8 304 1 1991 152 0 10 chr11 80200687 80200989 -68582483 - AluJb SINE Alu -13 299 1 290 286 24 0 chr11 80201179 80201263 -68582209 - MIR SINE MIR -69 139 54 29 101 0 0 chr11 80201572 80201671 -68581801 + AT_rich Low_complexity Low_complexity 1 99 0 234 314 133 37 chr11 80202770 80203092 -68580380 - L3 LINE CR1 -5 1572 1220 703 178 127 0 chr11 80206862 80207019 -68576453 + MIR SINE MIR 71 247 -15 596 27 0 0 chr11 80207938 80208011 -68575461 - tRNA-Pro-CCA tRNA tRNA -2 73 1 195 315 82 0 chr11 80208820 80208893 -68574579 + L2 LINE L2 3153 3231 -41 382 243 39 36 chr11 80208951 80209093 -68574379 - MIR3 SINE MIR -68 140 15 623 272 22 56 chr11 80209436 80209668 -68573804 - MIR SINE MIR -16 246 23 2117 101 28 0 chr11 80209779 80210066 -68573406 + AluSq SINE Alu 3 297 -16 320 64 21 0 chr11 80210066 80210113 -68573359 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 189 0 0 0 chr11 80210422 80210443 -68573029 + (GA)n Simple_repeat Simple_repeat 2 22 0 335 220 168 3 chr11 80210484 80210606 -68572866 + MIR SINE MIR 63 191 -22 182 250 217 11 chr11 80210646 80210738 -68572734 + MIR3 SINE MIR 76 186 -22 2253 109 0 0 chr11 80211227 80211531 -68571941 - AluSx SINE Alu -8 304 1 419 239 112 0 chr11 80212186 80212320 -68571152 + MIR SINE MIR 33 181 -81 291 308 32 49 chr11 80212816 80213001 -68570471 - L2 LINE L2 -225 3047 2866 189 331 12 104 chr11 80213063 80213226 -68570246 - L2 LINE L2 -93 3179 3032 213 326 80 0 chr11 80213377 80213515 -68569957 + L2 LINE L2 2637 2785 -529 215 254 34 0 chr11 80214284 80214343 -68569129 + MIR3 SINE MIR 104 164 -44 309 341 11 0 chr11 80214410 80214498 -68568974 + MIR SINE MIR 58 146 -62 442 265 80 20 chr11 80214779 80214930 -68568542 - MIR3 SINE MIR -32 176 17 195 238 20 0 chr11 80214969 80215034 -68568438 - MIR SINE MIR -78 130 64 317 303 30 20 chr11 80216086 80216185 -68567287 - MIR SINE MIR -13 249 150 1989 186 31 3 chr11 80216948 80217303 -68566169 + MLT1A1 LTR MaLR 1 365 0 190 222 0 0 chr11 80217400 80217436 -68566036 + MIR SINE MIR 162 197 -65 203 369 48 16 chr11 80217535 80217722 -68565750 - L2 LINE L2 -398 2916 2724 518 168 273 7 chr11 80218101 80218244 -68565228 + MER91A DNA MER1_type 16 196 0 442 329 41 12 chr11 80219045 80219215 -68564257 - MIR SINE MIR -4 258 84 2130 98 7 3 chr11 80219504 80219799 -68563673 + AluSx SINE Alu 3 298 -14 209 288 36 72 chr11 80220071 80220182 -68563290 - MIR3 SINE MIR -21 187 81 306 318 39 8 chr11 80220650 80220779 -68562693 - MIR3 SINE MIR -12 196 64 291 304 168 0 chr11 80220851 80220976 -68562496 - MIR SINE MIR -70 192 47 501 189 25 33 chr11 80220991 80221113 -68562359 + L1MB2 LINE L1 6051 6171 0 474 115 11 23 chr11 80221124 80221211 -68562261 + L1MB8 LINE L1 6093 6178 0 190 338 0 13 chr11 80221346 80221423 -68562049 + MER5B DNA MER1_type 2 77 -101 253 283 20 79 chr11 80221467 80221619 -68561853 - L2 LINE L2 -229 3043 2901 6536 207 82 65 chr11 80221905 80223632 -68559840 + MER52A LTR ERV1 1 1755 0 452 192 224 0 chr11 80223836 80223961 -68559511 + L1MB5 LINE L1 5963 6115 -59 551 295 98 18 chr11 80225173 80225397 -68558075 + MIR SINE MIR 21 262 0 201 354 0 0 chr11 80225610 80225689 -68557783 - L2 LINE L2 -550 2764 2686 1564 210 107 28 chr11 80225729 80226158 -68557314 - MLT1C LTR MaLR -1 466 4 255 280 47 9 chr11 80226645 80226752 -68556720 - MIR3 SINE MIR -86 122 12 1092 151 0 0 chr11 80227830 80227996 -68555476 + AluJb SINE Alu 137 302 -10 1509 111 4 35 chr11 80228042 80228268 -68555204 + AluSq SINE Alu 1 219 -94 1097 147 0 6 chr11 80228329 80228506 -68554966 + AluJb SINE Alu 137 312 0 324 158 0 0 chr11 80228509 80228566 -68554906 + GA-rich Low_complexity Low_complexity 3 59 0 1659 164 19 26 chr11 80229955 80230265 -68553207 + AluJo SINE Alu 5 312 0 181 225 25 0 chr11 80230307 80230347 -68553125 + L3 LINE CR1 1515 1555 -22 742 172 23 16 chr11 80230379 80230507 -68552965 - FLAM_C SINE Alu -4 129 1 215 195 12 0 chr11 80230701 80230755 -68552717 - MIR SINE MIR -108 154 101 284 310 37 2 chr11 80231033 80231152 -68552320 - MIR SINE MIR -77 131 29 590 163 16 38 chr11 80231681 80231865 -68551607 + GA-rich Low_complexity Low_complexity 1 180 0 299 352 42 0 chr11 80232050 80232192 -68551280 - L2 LINE L2 -432 2882 2735 251 236 209 0 chr11 80232221 80232331 -68551141 - MIR3 SINE MIR -15 193 61 1103 266 16 96 chr11 80232946 80233563 -68549909 + L1MD2 LINE L1 5792 6359 0 531 286 88 11 chr11 80233558 80233831 -68549641 - L1M4 LINE L1 -1286 4860 4567 * 40 0 0 0 chr11 80233842 80233882 -68549590 + AT_rich Low_complexity Low_complexity 1 40 0 4789 190 1 6 chr11 80234301 80235195 -68548277 + HERVL74 LTR ERVL 2438 3327 -2358 875 194 0 0 chr11 80235190 80235355 -68548117 + HERVL74 LTR ERVL 3479 3643 -2042 * 726 176 19 6 chr11 80235359 80235518 -68547954 + HERVL74 LTR ERVL 3913 4073 -1612 417 270 20 0 chr11 80235512 80235612 -68547860 + HERVL74 LTR ERVL 4592 4693 -992 * 264 318 82 0 chr11 80235613 80235698 -68547774 + HERVL74 LTR ERVL 4644 4735 -950 405 39 0 0 chr11 80236262 80236313 -68547159 + (TAGA)n Simple_repeat Simple_repeat 3 53 0 331 377 50 15 chr11 80236393 80236592 -68546880 - L1MCa LINE L1 -4352 2074 1869 * 412 291 17 9 chr11 80236480 80236595 -68546877 + L1MC4 LINE L1 6589 6705 -1337 336 48 0 0 chr11 80236639 80236681 -68546791 + (GA)n Simple_repeat Simple_repeat 2 43 0 332 316 26 43 chr11 80236731 80236848 -68546624 + L1MC4 LINE L1 6614 6728 -1314 1224 153 5 42 chr11 80236969 80237185 -68546287 - AluJo SINE Alu -104 208 1 527 292 81 11 chr11 80237548 80237733 -68545739 + MIR SINE MIR 47 244 -18 262 329 43 57 chr11 80237790 80237930 -68545542 - MIR3 SINE MIR -65 143 6 514 271 8 8 chr11 80238284 80238406 -68545066 + MIR3 SINE MIR 38 159 -49 450 278 78 27 chr11 80238927 80239168 -68544304 + MIR SINE MIR 1 259 -3 313 171 43 0 chr11 80239657 80239727 -68543745 - MER20B DNA MER1_type -55 728 656 646 215 113 36 chr11 80239730 80239925 -68543547 + MER63A DNA MER1_type 1 210 0 984 311 77 9 chr11 80239939 80240453 -68543019 - MER20B DNA MER1_type -160 623 1 1098 64 40 0 chr11 80240588 80240915 -68542557 + (TCCA)n Simple_repeat Simple_repeat 1 340 0 214 360 59 49 chr11 80240930 80241133 -68542339 - L2 LINE L2 -29 3243 3039 * 309 354 32 13 chr11 80241123 80241281 -68542191 + MIR SINE MIR 19 179 -83 227 320 31 21 chr11 80241775 80241872 -68541600 + L2 LINE L2 1897 1994 -1320 271 278 116 19 chr11 80243069 80243229 -68540243 + MIR SINE MIR 8 180 -62 242 325 146 7 chr11 80243369 80243520 -68539952 - L2 LINE L2 -5 3267 3096 222 200 0 0 chr11 80243700 80243740 -68539732 + (ATGGTG)n Simple_repeat Simple_repeat 3 42 0 1327 91 0 91 chr11 80243820 80244030 -68539442 + AluSg/x SINE Alu 107 297 -15 295 257 40 40 chr11 80244069 80244170 -68539302 - MIR SINE MIR -69 139 39 1597 165 40 4 chr11 80244436 80244708 -68538764 - AluJo SINE Alu -30 282 1 316 304 6 77 chr11 80244997 80245095 -68538377 + MIR SINE MIR 57 140 -122 2008 117 0 60 chr11 80245095 80245412 -68538060 + AluSx SINE Alu 1 298 -14 316 304 6 77 chr11 80245412 80245481 -68537991 + MIR SINE MIR 140 212 -50 2062 114 0 56 chr11 80245499 80245823 -68537649 + AluSx SINE Alu 3 308 -4 843 318 44 58 chr11 80245875 80246444 -68537028 - MLT1K LTR MaLR -27 561 1 1445 215 53 55 chr11 80246836 80247329 -68536143 + MLT1D LTR MaLR 2 493 -12 321 355 58 6 chr11 80247406 80247578 -68535894 - MIR SINE MIR -59 203 23 235 250 60 0 chr11 80247583 80247667 -68535805 - L3 LINE CR1 -77 1500 1412 274 257 274 9 chr11 80248343 80248456 -68535016 - MIR3 SINE MIR -9 199 57 435 236 49 57 chr11 80248600 80248723 -68534749 - MIR SINE MIR -135 127 6 268 319 156 0 chr11 80249250 80249385 -68534087 - MER91B DNA MER1_type -22 168 13 262 139 0 0 chr11 80249857 80249900 -68533572 - MIR SINE MIR -142 120 78 528 247 77 35 chr11 80250385 80250555 -68532917 + MIR SINE MIR 8 184 -78 268 308 13 0 chr11 80250665 80250743 -68532729 + MIR3 SINE MIR 98 176 -32 455 257 37 7 chr11 80251082 80251218 -68532254 + MIR SINE MIR 32 171 -91 237 325 39 0 chr11 80251755 80251832 -68531640 - L3 LINE CR1 -559 1018 939 423 362 52 17 chr11 80252574 80252806 -68530666 - MIR SINE MIR 0 262 23 184 254 0 51 chr11 80253312 80253371 -68530101 + MIR SINE MIR 72 127 -135 384 187 33 11 chr11 80254752 80254843 -68528629 + MSTD LTR MaLR 304 396 0 182 226 48 0 chr11 80255286 80255348 -68528124 - MIR SINE MIR -94 114 50 198 191 0 0 chr11 80255505 80255547 -68527925 + G-rich Low_complexity Low_complexity 3 44 0 1749 159 0 24 chr11 80255715 80256011 -68527461 + AluJb SINE Alu 1 289 -23 203 311 52 16 chr11 80256031 80256143 -68527329 + MIR SINE MIR 68 143 -65 210 229 0 0 chr11 80256327 80256375 -68527097 + (CCCTG)n Simple_repeat Simple_repeat 4 51 0 259 308 26 0 chr11 80256697 80256775 -68526697 + MIR SINE MIR 67 146 -62 379 329 177 0 chr11 80256837 80257001 -68526471 + MIR SINE MIR 1 193 -69 1538 175 69 34 chr11 80257020 80257369 -68526103 + MLT1A1 LTR MaLR 5 365 0 480 290 41 63 chr11 80257843 80258112 -68525360 - L2 LINE L2 -97 3175 2913 207 206 48 16 chr11 80258656 80258719 -68524753 + L2 LINE L2 2585 2649 -665 2154 96 10 0 chr11 80258760 80259052 -68524420 + AluSq SINE Alu 6 300 -13 246 226 178 7 chr11 80259195 80259341 -68524131 + L2 LINE L2 2836 3006 -266 274 289 22 0 chr11 80261103 80261193 -68522279 - MIR SINE MIR -63 145 54 417 214 127 0 chr11 80261557 80261683 -68521789 + L1ME4a LINE L1 5501 5642 -522 287 102 82 0 chr11 80261691 80261740 -68521732 + MER63 DNA MER1_type 1 53 -157 1629 71 0 0 chr11 80261753 80261950 -68521522 + AluSq SINE Alu 1 197 -116 736 107 18 0 chr11 80261951 80262063 -68521409 - AluY SINE Alu -11 300 187 636 161 18 0 chr11 80262062 80262174 -68521298 + AluSg/x SINE Alu 188 301 -9 * 658 248 62 41 chr11 80262436 80262678 -68520794 + L1ME3 LINE L1 5913 6159 -3 1345 182 58 4 chr11 80262687 80262945 -68520527 + L1MC1 LINE L1 6056 6327 -6 1386 185 125 14 chr11 80262973 80263091 -68520381 + AluJb SINE Alu 1 105 -207 234 0 0 0 chr11 80263091 80263117 -68520355 + (TA)n Simple_repeat Simple_repeat 1 26 0 1386 185 125 14 chr11 80263117 80263279 -68520193 + AluJb SINE Alu 105 312 0 842 189 94 0 chr11 80263360 80263519 -68519953 + FRAM SINE Alu 1 170 -6 1069 249 84 54 chr11 80263521 80263987 -68519485 - MLT1K LTR MaLR -72 516 37 986 221 60 44 chr11 80264076 80264565 -68518907 + MER39 LTR ERV1 5 535 -7 377 310 169 19 chr11 80264581 80264794 -68518678 + L1ME4a LINE L1 5639 5883 -238 2388 97 3 0 chr11 80264829 80265128 -68518344 + AluSg SINE Alu 1 300 -10 1119 182 11 21 chr11 80265238 80265425 -68518047 - AluJo SINE Alu -42 270 86 231 299 89 57 chr11 80265458 80265615 -68517857 - L2 LINE L2 -4 3309 3148 529 256 84 81 chr11 80266032 80266379 -68517093 + L1ME3 LINE L1 5562 5909 -257 2110 118 30 7 chr11 80316434 80316739 -68466733 - AluSx SINE Alu 0 312 1 237 65 0 0 chr11 80317779 80317810 -68465662 + (T)n Simple_repeat Simple_repeat 1 31 0 1529 172 0 19 chr11 80317884 80318152 -68465320 + AluJo SINE Alu 42 304 -8 479 247 70 6 chr11 80318233 80318391 -68465081 + MIR SINE MIR 78 245 -17 194 415 0 0 chr11 80318569 80318634 -68464838 - MIR SINE MIR -108 100 36 1759 147 26 0 chr11 80318822 80319095 -68464377 + AluJb SINE Alu 1 280 -32 29 0 0 0 chr11 80319618 80319647 -68463825 + AT_rich Low_complexity Low_complexity 1 29 0 547 297 6 12 chr11 80321873 80322038 -68461434 - MLT1J LTR MaLR -32 479 316 180 111 0 0 chr11 80322656 80322683 -68460789 + (T)n Simple_repeat Simple_repeat 1 27 0 571 174 116 8 chr11 80322980 80323101 -68460371 - MER94 DNA DNA 0 134 1 277 315 117 9 chr11 80323528 80323639 -68459833 - L2 LINE L2 0 3272 3150 2387 92 0 3 chr11 80324235 80324540 -68458932 - AluSq SINE Alu -9 304 1 480 43 143 0 chr11 80324600 80324670 -68458802 + MADE1 DNA Mariner 1 80 0 2731 206 69 47 chr11 80324999 80325843 -68457629 - L1MD3 LINE L1 0 8036 7190 348 188 0 0 chr11 80325819 80325883 -68457589 - L1MC4 LINE L1 -872 7170 7107 * 227 348 50 68 chr11 80326187 80326348 -68457124 + L2 LINE L2 3115 3272 0 398 211 29 10 chr11 80326982 80327086 -68456386 + MER103 DNA DNA 60 165 -1 794 302 81 60 chr11 80327210 80327680 -68455792 + L3 LINE CR1 1091 1570 -7 201 211 26 0 chr11 80328990 80329028 -68454444 - MIR3 SINE MIR -49 159 121 354 279 143 19 chr11 80329215 80329376 -68454096 - MIR SINE MIR -50 212 32 301 327 68 25 chr11 80329616 80329778 -68453694 + L2 LINE L2 3104 3272 0 253 65 0 43 chr11 80330211 80330257 -68453215 + (TTA)n Simple_repeat Simple_repeat 2 45 0 479 262 177 12 chr11 80330772 80330936 -68452536 - MIR3 SINE MIR -2 206 16 227 136 0 68 chr11 80330948 80331007 -68452465 + (TTTTTG)n Simple_repeat Simple_repeat 6 60 0 204 250 0 0 chr11 80331675 80331715 -68451757 - MER91 DNA MER1_type -3 137 98 1962 137 0 7 chr11 80332324 80332639 -68450833 - AluJb SINE Alu 0 313 1 2160 128 0 0 chr11 80332754 80333052 -68450420 + AluSx SINE Alu 1 298 -14 285 375 107 32 chr11 80333079 80333519 -68449953 + L3 LINE CR1 903 1375 -202 31 44 0 0 chr11 80334358 80334403 -68449069 + AT_rich Low_complexity Low_complexity 1 45 0 1963 158 0 3 chr11 80335021 80335331 -68448141 + AluSx SINE Alu 1 309 -3 195 382 49 10 chr11 80335635 80335737 -68447735 - MIR SINE MIR -86 122 17 411 269 141 13 chr11 80336005 80336154 -68447318 - MIR SINE MIR -29 233 66 547 151 0 0 chr11 80336271 80336357 -68447115 - AluSq/x SINE Alu -180 133 48 2480 73 0 0 chr11 80336479 80336780 -68446692 + AluY SINE Alu 1 301 -10 308 181 39 29 chr11 80336785 80337040 -68446432 + AluJo SINE Alu 1 299 -3 1053 234 97 44 chr11 80337432 80337843 -68445629 + L1MC4a LINE L1 5308 5740 -2068 9521 124 63 29 chr11 80337875 80338762 -68444710 - Tigger1 DNA MER2_type -2 2416 1448 1900 142 23 23 chr11 80338762 80339072 -68444400 - AluJo SINE Alu -2 310 1 9521 124 63 29 chr11 80339072 80339786 -68443686 - Tigger1 DNA MER2_type -970 1448 760 2319 166 9 41 chr11 80339783 80340145 -68443327 - Tigger1 DNA MER2_type -1997 421 74 * 1959 109 4 4 chr11 80340145 80340419 -68443053 + AluSx SINE Alu 33 306 -6 2319 166 9 41 chr11 80340419 80340491 -68442981 - Tigger1 DNA MER2_type -2344 74 1 309 265 97 76 chr11 80340500 80340738 -68442734 + L1MC4a LINE L1 5817 6059 -1749 741 233 45 17 chr11 80340789 80340965 -68442507 + AluJo SINE Alu 113 293 -19 1483 200 19 0 chr11 80340985 80341255 -68442217 + AluJo SINE Alu 11 285 -27 1395 300 60 40 chr11 80341353 80341983 -68441489 - L1M4b LINE L1 -6203 656 14 385 351 52 15 chr11 80341991 80342259 -68441213 - L1 LINE L1 -2545 3601 3324 1948 121 21 7 chr11 80342322 80342630 -68440842 + AluSx SINE Alu 1 312 0 526 241 35 14 chr11 80342742 80342883 -68440589 - MIR SINE MIR -42 220 77 2002 98 5 12 chr11 80343146 80343553 -68439919 + MER75 DNA T2_type 1 504 0 309 314 12 0 chr11 80344457 80344543 -68438929 - L2 LINE L2 -1 3271 3185 * 382 288 90 68 chr11 80344540 80344818 -68438654 + L2 LINE L2 3029 3312 -1 344 194 128 130 chr11 80344994 80345186 -68438286 + MIR SINE MIR 72 262 0 355 268 61 0 chr11 80345390 80345472 -68438000 - MIR SINE MIR -155 107 21 1197 160 44 4 chr11 80345478 80345703 -68437769 - L1MB3 LINE L1 0 6183 5950 210 262 93 65 chr11 80346448 80346555 -68436917 + L3 LINE CR1 200 309 -1268 22 0 0 0 chr11 80347710 80347732 -68435740 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 80347928 80347949 -68435523 + AT_rich Low_complexity Low_complexity 1 21 0 1888 180 7 0 chr11 80349063 80349369 -68434103 - AluJb SINE Alu -4 308 1 266 242 92 17 chr11 80349437 80349557 -68433915 - L1ME4a LINE L1 -31 6090 5962 216 0 0 0 chr11 80349586 80349610 -68433862 + (TA)n Simple_repeat Simple_repeat 2 25 0 244 285 36 29 chr11 80349716 80349768 -68433704 - L1ME4a LINE L1 -348 5773 5723 243 0 0 0 chr11 80349768 80349795 -68433677 + (TG)n Simple_repeat Simple_repeat 2 28 0 244 285 36 29 chr11 80349795 80349879 -68433593 - L1ME4a LINE L1 -398 5723 5636 2171 120 0 0 chr11 80349977 80350276 -68433196 - AluSx SINE Alu -13 299 1 24 32 0 0 chr11 80351068 80351099 -68432373 + AT_rich Low_complexity Low_complexity 1 31 0 1776 168 7 16 chr11 80352388 80352691 -68430781 + AluJo SINE Alu 1 300 -12 679 186 4 28 chr11 80352693 80352958 -68430514 + AluJ SINE Alu 3 309 -3 279 0 0 0 chr11 80353260 80353291 -68430181 + (T)n Simple_repeat Simple_repeat 1 31 0 234 0 0 0 chr11 80353465 80353491 -68429981 + (A)n Simple_repeat Simple_repeat 1 26 0 2187 116 3 0 chr11 80353506 80353798 -68429674 + AluSx SINE Alu 1 293 -19 628 229 0 17 chr11 80353804 80353983 -68429489 + L1M4 LINE L1 2187 2362 -3784 2713 210 80 55 chr11 80354173 80355253 -68428219 + L1M4 LINE L1 2382 3488 -2658 663 211 108 4 chr11 80355361 80355373 -68428099 - L1MDa LINE L1 -3937 2603 2594 2491 71 0 0 chr11 80355373 80355682 -68427790 - AluY SINE Alu -2 309 1 663 211 108 4 chr11 80355682 80355920 -68427552 - L1MDa LINE L1 -3946 2594 2327 1325 129 12 102 chr11 80355932 80356187 -68427285 + AluJo SINE Alu 66 297 -15 1829 267 89 36 chr11 80356369 80357001 -68426471 + L1MB8 LINE L1 672 1336 -5523 1315 177 125 35 chr11 80357011 80357322 -68426150 + MER2 DNA MER2_type 3 341 -4 2207 253 46 39 chr11 80357337 80358321 -68425151 + L1MB8 LINE L1 1355 2345 -4614 253 315 0 0 chr11 80358308 80358400 -68425072 + L1MB8 LINE L1 4886 4977 -1980 * 25 0 0 0 chr11 80358460 80358485 -68424987 + AT_rich Low_complexity Low_complexity 1 25 0 2110 198 31 34 chr11 80358652 80359121 -68424351 + L1MB8 LINE L1 5504 5972 -985 2116 117 0 7 chr11 80359121 80359420 -68424052 - AluSx SINE Alu -15 297 1 2110 198 31 34 chr11 80359420 80359506 -68423966 + L1MB8 LINE L1 5972 6057 -900 257 168 33 7 chr11 80359501 80359573 -68423899 - L1M4 LINE L1 -606 5572 5497 * 185 0 40 0 chr11 80359623 80359648 -68423824 + (TA)n Simple_repeat Simple_repeat 1 26 0 3468 205 50 22 chr11 80359648 80360526 -68422946 + L1MB8 LINE L1 6087 6989 0 449 36 0 0 chr11 80360536 80360591 -68422881 + AluY SINE Alu 2 55 -258 908 101 0 0 chr11 80360591 80360710 -68422762 - AluSg/x SINE Alu -73 239 121 404 249 139 5 chr11 80361028 80361201 -68422271 - MIR SINE MIR -29 233 30 219 154 0 0 chr11 80361837 80361876 -68421596 + T-rich Low_complexity Low_complexity 1 39 0 396 270 144 52 chr11 80362054 80362228 -68421244 - MIR SINE MIR -24 238 49 23 54 0 0 chr11 80364213 80364250 -68419222 + AT_rich Low_complexity Low_complexity 1 37 0 185 132 26 0 chr11 80364457 80364495 -68418977 + (TA)n Simple_repeat Simple_repeat 1 39 0 23 33 0 0 chr11 80365923 80365953 -68417519 + AT_rich Low_complexity Low_complexity 1 30 0 641 300 79 5 chr11 80366597 80366787 -68416685 + MIR SINE MIR 59 262 0 560 296 31 31 chr11 80367017 80367277 -68416195 + MIR SINE MIR 3 262 0 325 238 62 0 chr11 80367492 80367572 -68415900 - L2 LINE L2 0 3313 3229 549 303 19 6 chr11 80367604 80367766 -68415706 - MIR3 SINE MIR -6 202 39 800 293 116 53 chr11 80367986 80368365 -68415107 - L2 LINE L2 -4 3309 2907 228 330 19 0 chr11 80368368 80368474 -68414998 - L2 LINE L2 -513 2801 2694 547 203 68 131 chr11 80368742 80368964 -68414508 + MIR SINE MIR 49 256 -6 498 257 35 0 chr11 80371264 80371377 -68412095 - L2 LINE L2 0 3313 3197 3984 166 81 19 chr11 80371748 80372592 -68410880 - L1MB8 LINE L1 -10 6168 5273 366 341 67 14 chr11 80372781 80372971 -68410501 + MIR SINE MIR 3 206 -56 419 325 82 65 chr11 80373728 80374141 -68409331 - L2 LINE L2 -11 3261 2842 972 269 131 21 chr11 80375172 80375607 -68407865 - L2 LINE L2 0 3313 2831 720 194 83 27 chr11 80375614 80375706 -68407766 - L1M4c LINE L1 -2172 4472 4387 2242 116 0 7 chr11 80375706 80376016 -68407456 - AluSg SINE Alu 0 310 3 720 194 83 27 chr11 80376016 80376275 -68407197 - L1M4c LINE L1 -2257 4387 2488 1046 176 52 39 chr11 80376298 80376605 -68406867 - L1M4c LINE L1 -4105 2541 2231 420 256 181 96 chr11 80376690 80377410 -68406062 - L1M4c LINE L1 -5587 955 145 1139 140 53 29 chr11 80377410 80377617 -68405855 - L1MB3 LINE L1 -1 6182 5971 420 256 181 96 chr11 80377617 80377775 -68405697 - L1M4c LINE L1 -6397 145 2 1557 211 395 7 chr11 80377783 80378494 -68404978 - L2 LINE L2 -859 2455 1469 186 283 50 0 chr11 80379251 80379311 -68404161 + L2 LINE L2 3245 3307 -6 466 261 97 18 chr11 80379933 80380098 -68403374 - MER5A DNA MER1_type 0 189 12 188 246 140 0 chr11 80380263 80380320 -68403152 - MIR SINE MIR -75 187 123 778 223 157 1 chr11 80380701 80381094 -68402378 + LTR16C LTR ERVL 7 491 0 337 332 62 0 chr11 80381097 80381290 -68402182 + L2 LINE L2 1441 1645 -1669 2706 228 94 22 chr11 80381394 80382298 -68401174 + L1MEc LINE L1 35 1043 -5353 11002 110 14 3 chr11 80382324 80383878 -68399594 - Tigger1 DNA MER2_type -723 1695 125 10305 51 1 2 chr11 80383878 80385891 -68397581 + L1PA6 LINE L1 4135 6154 0 325 197 118 0 chr11 80385892 80385968 -68397504 + L1P1 LINE L1 5391 5475 -680 265 273 52 0 chr11 80385989 80386066 -68397406 + L2 LINE L2 3196 3276 -37 23 0 0 0 chr11 80386324 80386347 -68397125 + AT_rich Low_complexity Low_complexity 1 23 0 429 306 23 69 chr11 80386354 80386458 -68397014 - L1ME3A LINE L1 -26 6144 6037 1574 141 4 0 chr11 80386458 80386685 -68396787 + AluSx SINE Alu 3 230 -82 429 306 23 69 chr11 80386685 80386884 -68396588 - L1ME3A LINE L1 -133 6037 5855 218 32 32 0 chr11 80386898 80386929 -68396543 + (TA)n Simple_repeat Simple_repeat 2 33 0 11027 195 40 41 chr11 80387063 80388654 -68394818 - L1MC3 LINE L1 -20 8560 6969 1854 156 21 0 chr11 80388654 80388937 -68394535 + AluJb SINE Alu 1 289 -23 11027 195 40 41 chr11 80388937 80389357 -68394115 - L1MC3 LINE L1 -1611 6969 6550 2489 131 15 49 chr11 80389357 80389768 -68393704 + MLT2C1 LTR ERVL 1 397 0 11027 195 40 41 chr11 80389768 80390410 -68393062 - L1MC3 LINE L1 -2030 6550 5959 458 303 67 17 chr11 80390414 80390771 -68392701 - L1MEc LINE L1 -4104 2292 1918 1323 203 51 13 chr11 80390789 80391104 -68392368 - L1ME3A LINE L1 -5 6165 5839 4098 249 79 51 chr11 80391234 80391282 -68392190 - L1MC3 LINE L1 -3818 3123 3078 1598 149 62 24 chr11 80391282 80391570 -68391902 - AluJb SINE Alu -13 299 1 4098 249 79 51 chr11 80391570 80391581 -68391891 - L1MC3 LINE L1 -3863 3078 3069 1923 109 98 0 chr11 80391581 80391855 -68391617 - AluSx SINE Alu -11 301 1 4098 249 79 51 chr11 80391855 80394630 -68388842 - L1MC3 LINE L1 -3872 3069 18 860 174 0 8 chr11 80394660 80394792 -68388680 - FLAM_A SINE Alu -2 131 1 2115 101 0 64 chr11 80394805 80395132 -68388340 - AluSx SINE Alu -6 306 1 2227 100 27 0 chr11 80395715 80396014 -68387458 - AluSx SINE Alu -5 307 1 393 240 58 41 chr11 80396201 80396322 -68387150 - MIR SINE MIR -66 142 20 242 267 59 46 chr11 80396675 80396861 -68386611 + MIR SINE MIR 3 190 -62 305 324 56 0 chr11 80396974 80397082 -68386390 + MIR SINE MIR 39 152 -56 558 142 50 42 chr11 80397123 80397243 -68386229 - MER5A DNA MER1_type -63 126 6 202 211 0 0 chr11 80397706 80397744 -68385728 - MIR SINE MIR -6 256 219 525 294 22 61 chr11 80398910 80399138 -68384334 - MIR SINE MIR -7 255 37 894 160 33 22 chr11 80399311 80399492 -68383980 + MLT1B LTR MaLR 1 183 -207 245 158 35 35 chr11 80399489 80399546 -68383926 + MLT1B LTR MaLR 322 378 -12 * 180 0 0 0 chr11 80399935 80399955 -68383517 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1086 172 5 15 chr11 80399960 80400158 -68383314 - AluJo SINE Alu -30 282 87 497 278 70 22 chr11 80400159 80400429 -68383043 - L1M4 LINE L1 -960 5186 4904 5560 50 6 12 chr11 80400861 80401588 -68381884 - SVA Other Other -663 723 2 372 43 0 0 chr11 80401600 80401646 -68381826 + (GGGAGA)n Simple_repeat Simple_repeat 3 48 0 644 111 0 0 chr11 80401650 80401731 -68381741 - AluS SINE Alu -227 85 5 267 314 39 25 chr11 80401781 80402011 -68381461 - L1ME4a LINE L1 -158 5963 5727 279 232 146 0 chr11 80402047 80402129 -68381343 - L1ME4a LINE L1 -543 5578 5485 796 184 144 10 chr11 80402272 80402473 -68380999 - L1MC5 LINE L1 -41 7920 7693 2313 66 0 21 chr11 80402556 80402881 -68380591 + AluY SINE Alu 1 319 0 1685 148 21 0 chr11 80402889 80403173 -68380299 + L1MA8 LINE L1 5998 6287 -4 283 161 0 36 chr11 80403261 80403335 -68380137 - L1MC4 LINE L1 0 8042 7924 189 0 0 0 chr11 80403398 80403419 -68380053 + (T)n Simple_repeat Simple_repeat 1 21 0 270 136 0 0 chr11 80403651 80403695 -68379777 + (A)n Simple_repeat Simple_repeat 1 44 0 407 277 28 73 chr11 80403733 80403910 -68379562 + MIR SINE MIR 22 190 -72 1902 178 131 40 chr11 80404369 80404733 -68378739 + MLT1C LTR MaLR 1 411 -56 1997 128 24 3 chr11 80404733 80405022 -68378450 - AluSx SINE Alu -17 295 1 1902 178 131 40 chr11 80405022 80405085 -68378387 + MLT1C LTR MaLR 411 467 0 287 331 83 13 chr11 80405142 80405299 -68378173 + L2 LINE L2 3096 3263 -9 6595 73 12 10 chr11 80406618 80407325 -68376147 - L1PA10 LINE L1 -5 6163 5452 2121 120 0 0 chr11 80407325 80407608 -68375864 - AluSx SINE Alu -29 283 1 6595 73 12 10 chr11 80407608 80407798 -68375674 - L1PA10 LINE L1 -716 5452 5264 271 250 0 0 chr11 80407833 80407893 -68375579 + L1MC4 LINE L1 7403 7462 -580 3960 182 100 17 chr11 80407899 80408680 -68374792 + MER21B LTR ERV1 1 846 -17 2053 244 36 11 chr11 80408703 80409257 -68374215 + L1MC4 LINE L1 7457 8024 -18 6546 149 16 8 chr11 80409260 80410331 -68373141 + L1MC1 LINE L1 5254 6333 0 2663 198 16 2 chr11 80410351 80410850 -68372622 + L1ME1 LINE L1 5444 5949 -217 533 206 15 49 chr11 80410871 80411017 -68372455 + L1ME1 LINE L1 6030 6175 -3 964 261 22 62 chr11 80411878 80412130 -68371342 - L1ME4a LINE L1 -169 5952 5724 722 179 89 48 chr11 80412130 80412298 -68371174 + MER69A DNA AcHobo 3 177 0 964 261 22 62 chr11 80412298 80412493 -68370979 - L1ME4a LINE L1 -397 5724 5523 1895 176 70 30 chr11 80412606 80413078 -68370394 + Charlie4a DNA MER1_type 17 507 -1 874 249 26 57 chr11 80413212 80413477 -68369995 - Charlie8 DNA MER1_type -2160 257 1 316 308 134 34 chr11 80413825 80414062 -68369410 + L1M4 LINE L1 4254 4466 -1680 2067 117 7 0 chr11 80414062 80414381 -68369091 + AluSx SINE Alu 1 312 0 316 308 134 34 chr11 80414381 80414701 -68368771 + L1M4 LINE L1 4466 4867 -1279 928 118 0 22 chr11 80414809 80414945 -68368527 + FLAM_C SINE Alu 1 133 0 180 0 0 0 chr11 80415010 80415030 -68368442 + (T)n Simple_repeat Simple_repeat 1 20 0 2245 101 7 0 chr11 80415153 80415459 -68368013 - AluSx SINE Alu -4 308 1 1049 239 66 15 chr11 80415460 80415719 -68367753 + MLT1A1 LTR MaLR 93 364 -1 1347 235 61 32 chr11 80415724 80416103 -68367369 - MLT2C1 LTR ERVL -7 390 1 1842 197 58 3 chr11 80416931 80417276 -68366196 - MLT1A1 LTR MaLR -1 364 1 221 319 0 0 chr11 80417487 80417556 -68365916 + L2 LINE L2 3185 3253 -19 238 252 0 19 chr11 80417558 80417665 -68365807 + GA-rich Low_complexity Low_complexity 1 105 0 198 118 0 0 chr11 80417658 80417692 -68365780 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 * 255 324 74 0 chr11 80417829 80417937 -68365535 - MIR3 SINE MIR -27 181 66 270 221 67 0 chr11 80418541 80418645 -68364827 + (TCTCTG)n Simple_repeat Simple_repeat 2 112 0 692 284 59 0 chr11 80419157 80419361 -68364111 + MIR SINE MIR 35 250 -12 180 264 46 35 chr11 80419402 80419489 -68363983 + L2 LINE L2 2692 2779 -535 4320 146 28 18 chr11 80419490 80420208 -68363264 + MER50 LTR ERV1 1 725 -9 633 295 190 14 chr11 80420211 80420790 -68362682 + L2 LINE L2 1927 2607 -707 329 200 63 0 chr11 80420837 80420932 -68362540 + L1ME2 LINE L1 6063 6163 -1 2224 90 0 0 chr11 80420999 80421287 -68362185 - AluSx SINE Alu -12 300 13 262 267 0 0 chr11 80421323 80421383 -68362089 - MER112 DNA MER1_type 0 260 201 198 103 0 0 chr11 80421409 80421438 -68362034 + (TAAAA)n Simple_repeat Simple_repeat 4 32 0 1072 247 101 14 chr11 80421587 80421952 -68361520 + L2 LINE L2 2838 3234 -79 6647 131 137 119 chr11 80421952 80423620 -68359852 - pTR5 LTR ERV1 0 2438 741 316 303 45 15 chr11 80424301 80424433 -68359039 - MIR3 SINE MIR -8 200 65 599 136 15 61 chr11 80425554 80425686 -68357786 + L2 LINE L2 3188 3313 0 197 363 102 0 chr11 80425688 80425845 -68357627 - L2 LINE L2 -205 3067 2895 1558 197 0 17 chr11 80425999 80426288 -68357184 - AluJb SINE Alu -20 292 9 479 243 14 29 chr11 80426294 80426434 -68357038 + Charlie7 DNA MER1_type 69 206 -2406 857 179 115 164 chr11 80426483 80426724 -68356748 + Charlie7 DNA MER1_type 1428 1636 -976 1838 125 77 0 chr11 80426724 80427011 -68356461 - AluSx SINE Alu -2 310 2 857 179 115 164 chr11 80427011 80427238 -68356234 + Charlie7 DNA MER1_type 1636 1873 -739 305 120 0 0 chr11 80427239 80427289 -68356183 + Charlie7 DNA MER1_type 1977 2026 -586 756 83 0 0 chr11 80427289 80427385 -68356087 + AluY SINE Alu 206 301 -10 2094 123 0 10 chr11 80428127 80428435 -68355037 - AluSq SINE Alu -8 305 1 414 353 79 35 chr11 80428607 80429265 -68354207 + L1MC4a LINE L1 5255 5941 -1867 24 0 0 0 chr11 80429452 80429476 -68353996 + AT_rich Low_complexity Low_complexity 1 24 0 212 254 254 50 chr11 80429769 80429970 -68353502 + L2 LINE L2 2988 3229 -84 260 301 0 0 chr11 80430018 80430101 -68353371 + (TTCA)n Simple_repeat Simple_repeat 2 84 0 361 294 93 16 chr11 80430348 80430542 -68352930 + L2 LINE L2 2876 3084 -188 194 294 98 11 chr11 80430637 80430729 -68352743 + L2 LINE L2 3171 3270 -2 408 284 22 22 chr11 80430756 80430890 -68352582 - MIR SINE MIR -109 153 20 228 250 0 31 chr11 80431761 80431825 -68351647 + tRNA-Arg-CGG tRNA tRNA 5 66 -10 225 310 60 26 chr11 80431832 80431948 -68351524 + MIR SINE MIR 128 247 -15 217 180 113 18 chr11 80434208 80434292 -68349180 + MIR SINE MIR 47 149 -59 317 297 50 10 chr11 80434644 80434745 -68348727 + MIR3 SINE MIR 82 186 -22 337 282 81 13 chr11 80434977 80435126 -68348346 + MIR SINE MIR 13 171 -91 401 287 61 0 chr11 80435688 80435803 -68347669 + L2 LINE L2 3141 3262 -10 245 266 115 53 chr11 80435916 80436029 -68347443 + MIR SINE MIR 17 136 -72 193 290 16 0 chr11 80438324 80438386 -68345086 - MIR SINE MIR -125 83 21 391 278 61 1 chr11 80438869 80439004 -68344468 - MIR3 SINE MIR -47 161 20 312 294 33 0 chr11 80439766 80439858 -68343614 - MIR3 SINE MIR -52 156 62 197 293 67 27 chr11 80440310 80440385 -68343087 - MIR3 SINE MIR -53 155 78 308 284 0 159 chr11 80441620 80441852 -68341620 - L2 LINE L2 -78 3194 3000 404 246 246 0 chr11 80442054 80442196 -68341276 + MIR SINE MIR 74 250 -12 250 239 15 15 chr11 80443248 80443315 -68340157 - L2 LINE L2 -1 3271 3205 340 301 110 7 chr11 80443442 80443578 -68339894 + MIR SINE MIR 59 208 -54 * 631 283 88 6 chr11 80443566 80443793 -68339679 - MIR SINE MIR -12 250 20 202 345 93 29 chr11 80444296 80444435 -68339037 + L2 LINE L2 2948 3095 -177 416 289 282 12 chr11 80444631 80445046 -68338426 + L2 LINE L2 2450 2976 -338 229 382 18 0 chr11 80445449 80445559 -68337913 + MIR3 SINE MIR 45 156 -52 378 0 0 0 chr11 80445796 80445838 -68337634 + (TG)n Simple_repeat Simple_repeat 1 42 0 216 67 0 0 chr11 80445838 80445868 -68337604 + (GA)n Simple_repeat Simple_repeat 2 31 0 574 236 48 34 chr11 80445933 80446129 -68337343 - MIR SINE MIR -46 216 20 413 311 67 0 chr11 80446161 80446296 -68337176 - MIR SINE MIR -112 150 7 378 306 45 0 chr11 80446735 80446846 -68336626 + MIR3 SINE MIR 41 156 -52 874 165 0 0 chr11 80447127 80447260 -68336212 - FLAM_C SINE Alu 0 133 1 1996 201 276 52 chr11 80447261 80448103 -68335369 - L1MC4 LINE L1 -192 7850 6821 828 194 38 50 chr11 80448091 80448426 -68335046 - L1MC5 LINE L1 -769 7192 6876 * 1471 249 50 57 chr11 80448479 80449193 -68334279 - L1M4 LINE L1 -1519 4627 3918 1588 205 3 25 chr11 80449193 80449510 -68333962 - AluJo SINE Alu -2 310 1 1471 249 50 57 chr11 80449510 80449601 -68333871 - L1M4 LINE L1 -2228 3918 3828 478 288 69 64 chr11 80449586 80450149 -68333323 - L1M4 LINE L1 -3328 2818 2253 * 217 309 44 37 chr11 80451218 80451354 -68332118 - L3 LINE CR1 -356 1221 1085 275 246 111 32 chr11 80451463 80451589 -68331883 - L2 LINE L2 0 3272 3137 295 271 118 26 chr11 80451844 80452035 -68331437 + MIR SINE MIR 37 244 -18 295 212 130 92 chr11 80452242 80452426 -68331046 - MIR3 SINE MIR -5 203 13 264 243 107 0 chr11 80452693 80452796 -68330676 + L2 LINE L2 3158 3271 -1 204 67 0 0 chr11 80452945 80452975 -68330497 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 743 206 7 0 chr11 80453198 80453334 -68330138 - L1MB4 LINE L1 -8 6172 6036 184 211 96 0 chr11 80453625 80453677 -68329795 + MIR SINE MIR 31 87 -121 3295 130 78 2 chr11 80455340 80455921 -68327551 + L1P LINE L1 3867 4497 -1649 2339 87 10 0 chr11 80455921 80456230 -68327242 + AluSx SINE Alu 1 312 0 3295 130 78 2 chr11 80456230 80456247 -68327225 + L1P LINE L1 4497 4511 -1635 288 130 0 0 chr11 80456444 80456490 -68326982 + (A)n Simple_repeat Simple_repeat 1 46 0 6595 80 33 0 chr11 80456499 80458160 -68325312 + L1PA11 LINE L1 4483 6172 -2 183 261 54 98 chr11 80458160 80458243 -68325229 - MER5B DNA MER1_type -55 123 43 2211 92 3 3 chr11 80458259 80458562 -68324910 - AluSp SINE Alu -10 303 1 1880 237 56 2 chr11 80458706 80459149 -68324323 + MLT1C LTR MaLR 1 467 0 233 311 200 0 chr11 80459302 80459367 -68324105 - L2 LINE L2 -1 3312 3261 279 79 0 0 chr11 80459367 80459405 -68324067 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 233 311 200 0 chr11 80459405 80459574 -68323898 - L2 LINE L2 -52 3261 3031 217 209 0 0 chr11 80460147 80460190 -68323282 + MIR SINE MIR 108 150 -112 232 315 126 18 chr11 80460695 80460806 -68322666 + MIR SINE MIR 80 202 -60 1484 196 48 6 chr11 80460915 80461226 -68322246 + MER33 DNA MER1_type 1 324 0 511 302 78 10 chr11 80461658 80461863 -68321609 + MIR SINE MIR 20 238 -24 323 247 154 15 chr11 80462051 80462188 -68321284 - MIR3 SINE MIR -51 157 1 881 306 74 16 chr11 80462323 80462689 -68320783 - LTR16C LTR ERVL -15 476 90 252 133 26 80 chr11 80462869 80462982 -68320490 + (TTATA)n Simple_repeat Simple_repeat 3 109 0 243 0 0 0 chr11 80462994 80463021 -68320451 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 252 0 0 0 chr11 80463020 80463048 -68320424 + (TA)n Simple_repeat Simple_repeat 1 28 0 429 260 82 0 chr11 80463048 80463194 -68320278 + L1ME4a LINE L1 5724 5881 -240 562 176 10 0 chr11 80463228 80463330 -68320142 + MLT1A1 LTR MaLR 1 103 -262 207 0 0 0 chr11 80463330 80463353 -68320119 + (T)n Simple_repeat Simple_repeat 1 23 0 360 194 10 39 chr11 80463588 80463691 -68319781 + AluSp/q SINE Alu 203 302 -1 * 1054 234 126 41 chr11 80463677 80464219 -68319253 + Charlie7 DNA MER1_type 2003 2590 -22 183 290 68 65 chr11 80464425 80464673 -68318799 - L2 LINE L2 -724 2590 2342 441 0 0 0 chr11 80465879 80465928 -68317544 + (CA)n Simple_repeat Simple_repeat 2 50 0 310 253 172 0 chr11 80466754 80466853 -68316619 - MIR SINE MIR -123 139 24 296 207 36 126 chr11 80467257 80467368 -68316104 - MIR SINE MIR -66 196 96 213 269 60 0 chr11 80467634 80467701 -68315771 - MIR SINE MIR -179 83 13 * 378 265 37 52 chr11 80467645 80467781 -68315691 + MIR SINE MIR 20 153 -55 230 265 12 48 chr11 80468374 80468457 -68315015 - MIR SINE MIR -171 91 12 * 277 364 39 0 chr11 80468453 80468582 -68314890 - L2 LINE L2 0 3272 3139 695 283 122 0 chr11 80468588 80468818 -68314654 - MIR SINE MIR 0 262 5 1874 166 42 91 chr11 80468963 80469629 -68313843 + L1M4 LINE L1 4838 5452 -732 5000 23 4 0 chr11 80469630 80470188 -68313284 + SVA Other Other 827 1386 0 782 200 40 10 chr11 80470205 80470405 -68313067 + HAL1 LINE L1 1658 1863 -644 624 157 10 0 chr11 80470405 80470507 -68312965 + AluJb SINE Alu 191 293 -19 542 325 68 37 chr11 80470508 80470803 -68312669 + HAL1 LINE L1 1855 2158 -349 3793 151 43 35 chr11 80470804 80471554 -68311918 + L1MB8 LINE L1 5418 6173 -5 251 299 39 92 chr11 80471614 80471821 -68311651 - L2 LINE L2 -339 2975 2780 244 276 57 31 chr11 80472011 80472127 -68311345 + MIR SINE MIR 22 144 -64 302 252 47 47 chr11 80472572 80472679 -68310793 - MIR3 SINE MIR -36 172 66 399 308 87 40 chr11 80473273 80473595 -68309877 + L2 LINE L2 2640 2976 -338 239 311 43 24 chr11 80473994 80474134 -68309338 - MIR SINE MIR -47 161 15 658 241 112 5 chr11 80474537 80474724 -68308748 + MIR SINE MIR 36 242 -20 287 271 98 15 chr11 80474753 80474886 -68308586 + L2 LINE L2 3116 3259 -13 397 269 216 0 chr11 80475771 80475938 -68307534 - MIR SINE MIR -12 250 48 1358 275 137 48 chr11 80476058 80476604 -68306868 - MLT1G1 LTR MaLR 0 595 1 429 350 44 9 chr11 80476754 80476980 -68306492 - MIR SINE MIR -16 246 13 323 337 124 40 chr11 80477025 80477227 -68306245 + MIR SINE MIR 13 231 -31 328 122 0 0 chr11 80477527 80477576 -68305896 + MIR SINE MIR 106 154 -108 235 338 12 0 chr11 80477578 80477658 -68305814 - MIR SINE MIR 0 262 182 233 333 0 0 chr11 80478230 80478320 -68305152 + (CA)n Simple_repeat Simple_repeat 1 90 0 187 275 14 0 chr11 80479618 80479687 -68303785 + MIR SINE MIR 71 140 -68 370 240 41 8 chr11 80480159 80480280 -68303192 - MIR SINE MIR -61 147 23 725 215 104 36 chr11 80480925 80481113 -68302359 - L1MC4 LINE L1 -1 8041 7867 691 202 0 8 chr11 80481113 80481237 -68302235 + FLAM_C SINE Alu 2 124 -9 725 215 104 36 chr11 80481237 80481349 -68302123 - L1MC4 LINE L1 -175 7867 7609 441 125 0 0 chr11 80481428 80481492 -68301980 + AluJ/FLAM SINE Alu 26 89 -223 2506 234 70 90 chr11 80481508 80481671 -68301801 - L1MC5 LINE L1 -345 7616 7451 1930 139 0 17 chr11 80481671 80481973 -68301499 - AluJb SINE Alu -15 297 1 1496 150 7 51 chr11 80481978 80482272 -68301200 - AluJb SINE Alu -5 307 27 2506 234 70 90 chr11 80482272 80483974 -68299498 - L1MC5 LINE L1 -514 7447 5786 2112 97 10 10 chr11 80483974 80484274 -68299198 - AluSg SINE Alu -10 300 1 2506 234 70 90 chr11 80484274 80484681 -68298791 - L1MC5 LINE L1 -2175 5786 5373 217 234 0 0 chr11 80484684 80484731 -68298741 + L2 LINE L2 3188 3234 -38 205 340 21 31 chr11 80484772 80484869 -68298603 - MIR SINE MIR -71 137 42 436 320 20 13 chr11 80484889 80485039 -68298433 - L1ME4a LINE L1 -2 6119 5969 683 259 109 18 chr11 80485052 80485326 -68298146 - L1ME4a LINE L1 -200 5921 5623 186 208 42 0 chr11 80485793 80485841 -68297631 - L2 LINE L2 -219 3053 3004 318 194 172 11 chr11 80486169 80486262 -68297210 + MIR SINE MIR 30 137 -71 296 297 33 0 chr11 80487248 80487339 -68296133 - MIR SINE MIR -112 150 57 227 196 39 0 chr11 80487765 80487816 -68295656 - MIR SINE MIR -74 134 82 183 375 0 0 chr11 80488295 80488375 -68295097 - L2 LINE L2 -10 3262 3183 254 298 121 1 chr11 80488561 80488670 -68294802 - MIR SINE MIR -63 145 33 324 364 51 0 chr11 80489456 80489632 -68293840 + L2 LINE L2 2553 2737 -577 635 300 67 14 chr11 80489806 80490089 -68293383 - LTR16C LTR ERVL 0 491 194 1979 136 6 19 chr11 80490360 80490676 -68292796 + AluSx SINE Alu 1 312 0 365 221 67 29 chr11 80491293 80491397 -68292075 - MIR SINE MIR -106 156 49 264 279 85 60 chr11 80491811 80492012 -68291460 - L2 LINE L2 -90 3182 2977 264 271 43 0 chr11 80492158 80492228 -68291244 + MIR SINE MIR 118 190 -72 316 331 86 7 chr11 80492802 80492941 -68290531 + MIR SINE MIR 65 214 -48 224 312 40 48 chr11 80492994 80493119 -68290353 - L2 LINE L2 -69 3203 3080 234 265 402 0 chr11 80493183 80493285 -68290187 - L3 LINE CR1 -24 1553 1411 268 204 0 0 chr11 80493537 80493591 -68289881 + MIR SINE MIR 81 134 -128 345 230 60 10 chr11 80493800 80493900 -68289572 - MIR SINE MIR -87 121 17 286 390 58 0 chr11 80494201 80494373 -68289099 - MIR SINE MIR -66 196 15 845 204 44 0 chr11 80495158 80495339 -68288133 - MER5A DNA MER1_type 0 189 1 181 305 122 0 chr11 80495422 80495504 -68287968 + MIR SINE MIR 116 207 -55 364 264 121 33 chr11 80495570 80495644 -68287828 - MIR SINE MIR -32 230 164 234 0 0 0 chr11 80495644 80495670 -68287802 + (TTA)n Simple_repeat Simple_repeat 1 26 0 364 264 121 33 chr11 80495670 80495777 -68287695 - MIR SINE MIR -98 164 33 267 274 8 86 chr11 80495909 80496026 -68287446 + MIR3 SINE MIR 6 113 -95 268 316 0 13 chr11 80498273 80498349 -68285123 + L2 LINE L2 2677 2751 -563 320 167 14 0 chr11 80498504 80498576 -68284896 + CT-rich Low_complexity Low_complexity 4 76 0 205 306 104 8 chr11 80499079 80499203 -68284269 + MIR SINE MIR 43 189 -73 181 138 0 0 chr11 80501129 80501158 -68282314 + L2 LINE L2 3230 3258 -14 256 273 56 97 chr11 80501340 80501607 -68281865 - L2 LINE L2 -48 3224 2969 299 336 7 21 chr11 80501998 80502138 -68281334 - L2 LINE L2 -201 3071 2934 266 357 101 0 chr11 80502782 80502911 -68280561 + MIR SINE MIR 96 237 -25 1892 144 87 20 chr11 80503085 80503267 -68280205 + THE1C LTR MaLR 3 171 -204 252 0 0 0 chr11 80503267 80503295 -68280177 + (TC)n Simple_repeat Simple_repeat 1 28 0 1892 144 87 20 chr11 80503295 80503459 -68280013 + THE1C LTR MaLR 171 372 -3 337 319 18 6 chr11 80503810 80503976 -68279496 + (CA)n Simple_repeat Simple_repeat 1 168 0 1596 229 28 8 chr11 80504282 80504640 -68278832 - MLT1A1 LTR MaLR 0 365 1 290 258 15 0 chr11 80504755 80504821 -68278651 - MIR3 SINE MIR -32 176 110 331 278 104 9 chr11 80505039 80505154 -68278318 - MIR SINE MIR -70 192 67 294 29 0 0 chr11 80505215 80505250 -68278222 + (CA)n Simple_repeat Simple_repeat 2 36 0 204 40 0 0 chr11 80505532 80505557 -68277915 + (T)n Simple_repeat Simple_repeat 1 25 0 184 237 0 0 chr11 80505775 80505813 -68277659 - L2 LINE L2 -25 3247 3210 205 324 14 0 chr11 80505915 80505986 -68277486 + MIR SINE MIR 53 124 -84 206 255 0 0 chr11 80506595 80506642 -68276830 - MIR SINE MIR -78 130 84 414 88 0 0 chr11 80507352 80507420 -68276052 + (TG)n Simple_repeat Simple_repeat 1 68 0 420 299 166 33 chr11 80508018 80508342 -68275130 - L2 LINE L2 -233 3039 2759 2087 119 3 0 chr11 80508342 80508644 -68274828 - AluSx SINE Alu -9 303 1 420 299 166 33 chr11 80508644 80509484 -68273988 - L2 LINE L2 -513 2759 1712 2217 105 0 9 chr11 80510838 80511153 -68272319 - AluSq SINE Alu -1 312 1 300 175 0 0 chr11 80511367 80511424 -68272048 + L1ME4a LINE L1 6062 6118 -3 461 197 225 14 chr11 80511640 80511779 -68271693 + MIR SINE MIR 22 198 -64 1776 137 0 11 chr11 80511802 80512065 -68271407 + AluSx SINE Alu 17 260 -52 202 139 0 28 chr11 80512065 80512101 -68271371 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 282 259 47 0 chr11 80512371 80512541 -68270931 + C-rich Low_complexity Low_complexity 2 179 0 329 236 48 0 chr11 80512557 80512722 -68270750 + C-rich Low_complexity Low_complexity 1 173 0 288 305 175 6 chr11 80513387 80513544 -68269928 + MIR SINE MIR 20 203 -59 487 275 23 8 chr11 80514479 80514610 -68268862 - MIR SINE MIR -60 148 16 276 79 0 0 chr11 80514684 80514722 -68268750 + MADE1 DNA Mariner 1 38 -42 258 105 0 0 chr11 80514726 80514764 -68268708 + (T)n Simple_repeat Simple_repeat 1 38 0 1612 101 0 0 chr11 80514790 80514989 -68268483 + AluY SINE Alu 3 201 -110 519 289 188 14 chr11 80515448 80515805 -68267667 - L2 LINE L2 -33 3239 2821 2199 126 0 0 chr11 80516007 80516308 -68267164 - AluSx SINE Alu -11 301 1 235 327 159 9 chr11 80517069 80517176 -68266296 + MIR SINE MIR 20 142 -120 202 267 204 53 chr11 80517268 80517408 -68266064 - L3 LINE CR1 -12 1565 1448 1040 45 8 0 chr11 80517408 80517542 -68265930 + (TTTC)n Simple_repeat Simple_repeat 2 136 0 2036 106 0 0 chr11 80517550 80517814 -68265658 - AluSx SINE Alu -48 264 1 202 267 204 53 chr11 80517814 80517889 -68265583 - L3 LINE CR1 -134 1443 1307 200 286 0 39 chr11 80517897 80517974 -68265498 - L2 LINE L2 -13 3259 3186 190 329 98 34 chr11 80518431 80518665 -68264807 + L2 LINE L2 2839 3087 -185 700 259 94 0 chr11 80518923 80519147 -68264325 - MIR SINE MIR -10 252 8 501 275 54 7 chr11 80519626 80519775 -68263697 + MIR SINE MIR 51 206 -56 264 292 97 0 chr11 80519915 80520028 -68263444 - MIR SINE MIR -75 187 64 359 244 81 8 chr11 80520696 80520819 -68262653 + MIR SINE MIR 2 133 -129 246 281 31 0 chr11 80520817 80520881 -68262591 - L2 LINE L2 -2 3270 3205 * 596 319 38 17 chr11 80521239 80521474 -68261998 + MIR SINE MIR 23 262 0 345 270 11 0 chr11 80521918 80522025 -68261447 - MIR SINE MIR -68 140 45 336 308 140 41 chr11 80522066 80522481 -68260991 + L2 LINE L2 2817 3272 0 1641 246 102 4 chr11 80522506 80523006 -68260466 + MLT1H LTR MaLR 1 549 0 233 259 0 0 chr11 80523548 80523602 -68259870 + L2 LINE L2 3254 3307 -6 802 146 0 0 chr11 80523602 80523725 -68259747 + FLAM_C SINE Alu 2 124 -9 244 304 0 0 chr11 80523825 80523894 -68259578 - L2 LINE L2 -4 3268 3200 186 43 0 0 chr11 80524427 80524450 -68259022 + (CAGA)n Simple_repeat Simple_repeat 2 24 0 747 183 17 0 chr11 80524452 80524627 -68258845 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 314 98 20 0 chr11 80525218 80525269 -68258203 + (TG)n Simple_repeat Simple_repeat 2 53 0 288 319 85 0 chr11 80525470 80525564 -68257908 - MIR SINE MIR -65 143 42 678 97 0 0 chr11 80525713 80525806 -68257666 - AluSp/q SINE Alu -14 299 207 281 300 8 31 chr11 80525899 80526029 -68257443 - MIR SINE MIR -66 196 70 205 269 118 32 chr11 80526291 80526384 -68257088 + MIR SINE MIR 49 149 -59 392 342 47 5 chr11 80526869 80527062 -68256410 + MIR SINE MIR 37 237 -25 361 275 21 56 chr11 80527613 80527755 -68255717 + MIR3 SINE MIR 9 145 -63 225 132 0 0 chr11 80527768 80527806 -68255666 + (T)n Simple_repeat Simple_repeat 1 38 0 998 120 120 0 chr11 80527807 80527957 -68255515 - AluSp SINE Alu -68 245 78 355 248 6 0 chr11 80528466 80528567 -68254905 + MIR SINE MIR 97 197 -63 274 265 110 52 chr11 80528704 80528840 -68254632 - MIR3 SINE MIR -52 156 13 198 267 0 0 chr11 80529598 80529643 -68253829 - L2 LINE L2 -6 3307 3263 * 467 296 89 0 chr11 80529609 80529788 -68253684 - MIR SINE MIR -11 251 57 346 274 11 0 chr11 80530584 80530679 -68252793 - MIR SINE MIR -68 140 45 3746 193 20 77 chr11 80530846 80531871 -68251601 + LTR5 LTR ERVK 1 967 -2 189 284 0 60 chr11 80532246 80532313 -68251159 - MIR SINE MIR -60 148 86 448 175 29 15 chr11 80533077 80533214 -68250258 + (TGGA)n Simple_repeat Simple_repeat 1 139 0 221 180 20 20 chr11 80533220 80533270 -68250202 + (TGGG)n Simple_repeat Simple_repeat 1 50 0 6973 111 9 5 chr11 80533417 80534532 -68248940 + L1P LINE L1 1097 2216 -3930 233 284 0 30 chr11 80534968 80535035 -68248437 - 7SK RNA RNA -128 65 1 315 255 138 25 chr11 80535825 80536021 -68247451 + L1ME LINE L1 5433 5650 -514 256 296 123 15 chr11 80536514 80536635 -68246837 + MIR SINE MIR 21 154 -87 1711 149 13 55 chr11 80536643 80536951 -68246521 + AluJb SINE Alu 1 295 -17 2402 96 3 0 chr11 80537029 80537331 -68246141 + AluSx SINE Alu 1 303 -9 1567 165 63 15 chr11 80537331 80537654 -68245818 + Tigger6 DNA MER2_type 1256 1597 0 529 294 109 9 chr11 80538034 80538245 -68245227 + MIR SINE MIR 31 262 0 708 174 10 26 chr11 80538729 80539040 -68244432 + (TGGG)n Simple_repeat Simple_repeat 1 306 0 1882 117 0 0 chr11 80539073 80539320 -68244152 + AluSx SINE Alu 55 301 -11 261 287 116 0 chr11 80539426 80539555 -68243917 - MIR SINE MIR 0 262 119 379 200 43 87 chr11 80539696 80539811 -68243661 + L2 LINE L2 3203 3312 -1 207 279 15 15 chr11 80540222 80540290 -68243182 + MIR SINE MIR 64 131 -77 411 283 51 7 chr11 80540372 80540510 -68242962 + MIR SINE MIR 20 163 -99 332 314 17 0 chr11 80541322 80541440 -68242032 + MIR SINE MIR 30 149 -59 316 274 85 0 chr11 80542208 80542314 -68241158 - MIR3 SINE MIR -7 201 87 847 296 79 14 chr11 80542502 80543114 -68240358 + L2 LINE L2 2657 3311 -2 1765 134 62 16 chr11 80543549 80543869 -68239603 + MER44D DNA MER2_type 5 609 0 1440 85 0 0 chr11 80543879 80544397 -68239075 + (CATATA)n Simple_repeat Simple_repeat 1 518 0 952 183 12 6 chr11 80545420 80545589 -68237883 - FRAM SINE Alu -7 169 1 291 311 137 15 chr11 80545596 80545793 -68237679 - MIR SINE MIR -24 238 19 1780 158 61 39 chr11 80545798 80546080 -68237392 - L1MB7 LINE L1 0 6184 5889 1971 114 6 99 chr11 80546080 80546422 -68237050 - AluSg SINE Alu 0 310 1 1780 158 61 39 chr11 80546422 80546549 -68236923 - L1MB7 LINE L1 -295 5889 5766 346 318 0 40 chr11 80547253 80547401 -68236071 - MIR SINE MIR -112 150 9 304 261 78 50 chr11 80547551 80547731 -68235741 + L2 LINE L2 2922 3106 -166 303 242 37 75 chr11 80547824 80547985 -68235487 + MER112 DNA MER1_type 22 176 -84 1215 117 12 0 chr11 80548027 80548190 -68235282 - AluSp SINE Alu -11 302 138 403 261 43 0 chr11 80548211 80548326 -68235146 - MIR SINE MIR -58 150 31 277 250 45 45 chr11 80548358 80548470 -68235002 - MIR3 SINE MIR -14 194 83 331 217 108 70 chr11 80548587 80548744 -68234728 + MIR3 SINE MIR 32 194 -14 470 244 205 6 chr11 80549634 80549790 -68233682 - MIR SINE MIR -14 248 62 2300 126 8 3 chr11 80549805 80550187 -68233285 - L1MA4 LINE L1 -56 6244 5861 195 156 0 0 chr11 80550416 80550448 -68233024 - L2 LINE L2 -1 3271 3240 235 229 23 188 chr11 80550527 80550745 -68232727 - L2 LINE L2 -31 3282 3101 3300 324 74 23 chr11 80550853 80552444 -68231028 - ERVL LTR ERVL -537 5227 3556 2704 318 60 33 chr11 80552450 80552875 -68230597 - ERVL LTR ERVL -2206 3448 3036 483 55 11 132 chr11 80552875 80552966 -68230506 + MADE1 DNA Mariner 1 80 0 2704 318 60 33 chr11 80552966 80554237 -68229235 - ERVL LTR ERVL -2618 3036 1693 915 266 120 23 chr11 80554763 80555237 -68228235 - LTR33 LTR ERVL -1 520 1 254 329 94 16 chr11 80555822 80556159 -68227313 - L2 LINE L2 -182 3090 2735 411 208 10 21 chr11 80556186 80556282 -68227190 - MIR SINE MIR -96 166 72 584 266 35 0 chr11 80556352 80556495 -68226977 - MLT1G1 LTR MaLR 0 595 448 312 235 92 41 chr11 80557118 80557216 -68226256 + L2 LINE L2 3203 3305 -8 * 691 232 13 13 chr11 80557214 80557365 -68226107 - MIR SINE MIR -109 153 3 2446 98 0 0 chr11 80557384 80557691 -68225781 + AluSx SINE Alu 1 307 -5 326 339 59 0 chr11 80557838 80557956 -68225516 + L2 LINE L2 3188 3312 -1 * 400 264 54 16 chr11 80557955 80558084 -68225388 - MIR SINE MIR -121 141 8 193 255 20 0 chr11 80558078 80558129 -68225343 + MIR SINE MIR 96 147 -115 * 568 209 6 12 chr11 80558331 80558467 -68225005 + (TGGA)n Simple_repeat Simple_repeat 3 139 -25 2053 156 30 47 chr11 80558467 80558870 -68224602 - MSTD LTR MaLR 0 396 1 568 209 6 12 chr11 80558870 80558896 -68224576 + (TGGA)n Simple_repeat Simple_repeat 139 164 0 1724 38 0 42 chr11 80558993 80559233 -68224239 - L1PA4 LINE L1 0 6155 5926 2234 116 0 0 chr11 80559456 80559748 -68223724 + AluSx SINE Alu 5 296 -16 199 283 17 0 chr11 80559906 80559966 -68223506 - MIR SINE MIR -71 137 77 189 375 12 0 chr11 80560912 80560992 -68222480 - L3 LINE CR1 -735 842 762 1778 164 89 35 chr11 80561502 80561929 -68221543 - LTR47A LTR ERVL 0 452 3 216 250 0 73 chr11 80562533 80562601 -68220871 + MIR SINE MIR 123 185 -77 190 0 0 0 chr11 80562770 80562791 -68220681 + (TTTTG)n Simple_repeat Simple_repeat 1 155 0 711 174 0 23 chr11 80562791 80562915 -68220557 - FRAM SINE Alu -142 34 1 453 182 13 0 chr11 80562915 80562991 -68220481 - AluJ/FLAM SINE Alu -234 78 2 277 271 27 69 chr11 80563650 80563838 -68219634 + (CAGAGA)n Simple_repeat Simple_repeat 1 180 0 343 211 0 40 chr11 80563924 80564000 -68219472 - MIR3 SINE MIR -22 186 114 2186 131 3 0 chr11 80564583 80564889 -68218583 + AluJo SINE Alu 1 307 -5 2940 199 294 14 chr11 80565331 80566250 -68217222 + L1MC4 LINE L1 6463 7638 -404 349 282 55 25 chr11 80566252 80566454 -68217018 + L1MC4 LINE L1 7730 7937 -105 731 248 44 47 chr11 80566691 80566965 -68216507 + MLT1J LTR MaLR 231 503 -8 1777 288 70 45 chr11 80566976 80567469 -68216003 + L1M4 LINE L1 3868 4348 -1798 2129 114 13 13 chr11 80567469 80567768 -68215704 + AluJb SINE Alu 1 299 -13 1777 288 70 45 chr11 80567768 80568593 -68214879 + L1M4 LINE L1 4348 5218 -928 977 220 37 14 chr11 80568599 80568813 -68214659 + MLT1G1 LTR MaLR 7 225 -370 2281 120 3 0 chr11 80569083 80569391 -68214081 + AluSx SINE Alu 1 309 -3 406 167 0 33 chr11 80569534 80569624 -68213848 + MIR SINE MIR 46 132 -76 258 315 56 39 chr11 80569718 80569896 -68213576 + L2 LINE L2 2942 3122 -150 346 208 83 76 chr11 80571013 80571157 -68212315 + LTR16C LTR ERVL 347 491 0 1709 132 28 4 chr11 80571370 80571620 -68211852 + AluJb SINE Alu 6 261 -51 2473 79 3 0 chr11 80571820 80572123 -68211349 + AluSp SINE Alu 1 304 -9 1850 152 19 29 chr11 80572166 80572475 -68210997 + AluJb SINE Alu 1 306 -6 610 226 46 78 chr11 80572850 80573287 -68210185 + MLT1D LTR MaLR 1 505 0 306 106 0 0 chr11 80573963 80574010 -68209462 + (CA)n Simple_repeat Simple_repeat 1 47 0 245 313 80 0 chr11 80574426 80574538 -68208934 - MIR SINE MIR -93 169 49 * 975 275 52 50 chr11 80574537 80574611 -68208861 + L2 LINE L2 2677 2749 -564 2144 107 4 4 chr11 80574611 80574921 -68208551 + AluSg SINE Alu 1 310 0 975 275 52 50 chr11 80574921 80575445 -68208027 + L2 LINE L2 2749 3313 0 259 321 113 6 chr11 80575719 80575887 -68207585 - MIR SINE MIR -30 232 47 1237 178 131 42 chr11 80576321 80576580 -68206892 + AluJo SINE Alu 1 282 -30 270 0 0 0 chr11 80576583 80576613 -68206859 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 220 226 65 0 chr11 80577026 80577088 -68206384 - MIR3 SINE MIR -136 72 7 217 328 158 6 chr11 80577104 80577275 -68206197 - MIR SINE MIR -10 252 56 238 323 9 14 chr11 80577846 80578067 -68205405 + GA-rich Low_complexity Low_complexity 1 219 0 406 321 181 0 chr11 80578546 80578833 -68204639 - L2 LINE L2 0 3272 2934 975 167 5 32 chr11 80579617 80579803 -68203669 - AluJ SINE Alu -11 301 121 392 275 26 39 chr11 80579803 80579981 -68203491 - L1ME LINE L1 -353 5768 5589 1061 120 19 131 chr11 80579982 80580064 -68203408 + MER30 DNA MER1_type 1 91 -139 664 146 81 0 chr11 80580064 80580187 -68203285 + FLAM_C SINE Alu 1 133 0 1061 120 19 131 chr11 80580187 80580224 -68203248 + MER30 DNA MER1_type 91 131 -99 435 38 0 0 chr11 80580224 80580277 -68203195 + (TA)n Simple_repeat Simple_repeat 2 54 0 1704 82 0 157 chr11 80580277 80580633 -68202839 + AluSx SINE Alu 3 302 0 1061 120 19 131 chr11 80580633 80580770 -68202702 + MER30 DNA MER1_type 129 230 0 288 77 0 0 chr11 80580910 80580949 -68202523 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 881 136 0 0 chr11 80580951 80581069 -68202403 - AluJ SINE Alu -194 118 1 304 263 79 0 chr11 80581078 80581230 -68202242 - L1ME LINE L1 -731 5431 5268 27 29 0 0 chr11 80581383 80581417 -68202055 + AT_rich Low_complexity Low_complexity 1 34 0 371 285 71 46 chr11 80582942 80583229 -68200243 - L2 LINE L2 -251 3021 2736 1797 244 122 7 chr11 80583242 80583791 -68199681 - L1ME3A LINE L1 -1 6169 5558 582 281 0 29 chr11 80584780 80584976 -68198496 - MIR SINE MIR -34 228 41 435 246 63 0 chr11 80585151 80585277 -68198195 + MIR SINE MIR 75 208 -54 339 288 85 20 chr11 80587380 80587533 -68195939 + MIR SINE MIR 24 186 -76 480 296 43 6 chr11 80589155 80589317 -68194155 + MIR SINE MIR 18 185 -77 1392 243 45 3 chr11 80590017 80590391 -68193081 - LTR16A LTR ERVL -2 448 59 397 323 32 54 chr11 80590495 80590831 -68192641 + L2 LINE L2 2746 3079 -193 682 227 5 72 chr11 80591116 80591310 -68192162 - MIR SINE MIR -11 251 71 263 324 28 49 chr11 80591594 80591736 -68191736 - MIR3 SINE MIR -48 160 22 515 255 32 13 chr11 80592031 80592224 -68191248 + MIR SINE MIR 5 195 -62 251 325 156 7 chr11 80592450 80592604 -68190868 + L3 LINE CR1 1314 1490 -87 378 264 90 0 chr11 80592650 80592794 -68190678 - MIR3 SINE MIR -15 193 37 277 258 117 17 chr11 80592809 80592929 -68190543 - MIR SINE MIR -103 159 28 582 218 28 93 chr11 80593953 80594169 -68189303 - L2 LINE L2 -1 3312 3111 195 288 0 0 chr11 80594555 80594614 -68188858 - MIR SINE MIR -112 96 38 181 188 0 0 chr11 80595181 80595213 -68188259 - MIR SINE MIR -6 256 225 1421 171 46 7 chr11 80595288 80595568 -68187904 - MLT1B LTR MaLR 0 390 100 864 234 22 0 chr11 80595593 80595777 -68187695 + MIR SINE MIR 13 200 -62 301 248 107 16 chr11 80595877 80595998 -68187474 + MIR3 SINE MIR 59 190 -18 589 327 51 0 chr11 80596903 80597120 -68186352 + MIR SINE MIR 25 252 -10 345 324 176 0 chr11 80597246 80597422 -68186050 - MIR SINE MIR -6 256 50 380 344 88 22 chr11 80597510 80597737 -68185735 - MER112 DNA MER1_type -17 243 2 196 324 10 88 chr11 80598817 80598919 -68184553 + L2 LINE L2 3179 3272 0 476 199 60 90 chr11 80599025 80599191 -68184281 + MIR3 SINE MIR 46 206 -2 11854 145 82 41 chr11 80599672 80599691 -68183781 - L1M4 LINE L1 -3467 2915 2898 649 196 31 6 chr11 80599691 80599854 -68183618 - L1MB3 LINE L1 0 6183 6017 11854 145 82 41 chr11 80599854 80600064 -68183408 - L1M4 LINE L1 -3484 2898 2698 2003 158 0 3 chr11 80600064 80600362 -68183110 - AluJb SINE Alu -15 297 1 11854 145 82 41 chr11 80600362 80600704 -68182768 - L1M4 LINE L1 -3684 2698 2371 1995 117 3 90 chr11 80600704 80601047 -68182425 - AluSq SINE Alu 0 313 1 11854 145 82 41 chr11 80601047 80601265 -68182207 - L1M4 LINE L1 -4011 2371 2163 836 150 0 0 chr11 80601265 80601398 -68182074 - FLAM_C SINE Alu 0 133 1 11854 145 82 41 chr11 80601398 80603380 -68180092 - L1M4 LINE L1 -4219 2163 15 605 234 133 23 chr11 80603457 80603675 -68179797 - MIR SINE MIR 0 262 21 315 288 121 23 chr11 80603788 80603920 -68179552 - L2 LINE L2 -214 3058 2914 407 248 88 0 chr11 80604324 80604449 -68179023 + MIR SINE MIR 77 212 -50 180 247 99 12 chr11 80604477 80604558 -68178914 + MER5A DNA MER1_type 17 104 -85 1946 153 7 10 chr11 80604945 80605245 -68178227 + AluJo SINE Alu 1 299 -13 552 258 27 25 chr11 80605274 80605478 -68177994 - MIR SINE MIR -56 206 4 261 307 96 42 chr11 80605499 80605665 -68177807 + MIR3 SINE MIR 16 190 -18 365 295 111 66 chr11 80605851 80606122 -68177350 - L2 LINE L2 -421 2893 2611 520 227 204 23 chr11 80606650 80606822 -68176650 - MIR SINE MIR -24 238 36 22 0 0 0 chr11 80607411 80607433 -68176039 + AT_rich Low_complexity Low_complexity 1 22 0 195 139 0 0 chr11 80608154 80608190 -68175282 + (CA)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr11 80608377 80608398 -68175074 + GC_rich Low_complexity Low_complexity 1 21 0 44 75 0 0 chr11 80608430 80608523 -68174949 + GC_rich Low_complexity Low_complexity 1 93 0 24 0 0 0 chr11 80608541 80608565 -68174907 + GC_rich Low_complexity Low_complexity 1 24 0 202 324 14 14 chr11 80611032 80611106 -68172366 + MIR SINE MIR 33 106 -102 195 272 126 0 chr11 80611550 80611653 -68171819 - L2 LINE L2 -222 3050 2935 454 298 98 0 chr11 80612205 80612420 -68171052 - MIR SINE MIR -6 256 21 385 269 25 8 chr11 80612605 80612724 -68170748 + MIR SINE MIR 22 142 -66 204 205 359 26 chr11 80613820 80613937 -68169535 - MIR SINE MIR -71 191 36 331 250 142 0 chr11 80615008 80615150 -68168322 - MIR SINE MIR -71 137 5 297 247 13 167 chr11 80615159 80615309 -68168163 + L2 LINE L2 3137 3263 -9 411 302 0 23 chr11 80615336 80615465 -68168007 - MIR3 SINE MIR -44 164 39 197 341 71 0 chr11 80615605 80615690 -68167782 - MIR SINE MIR -36 226 136 978 92 7 38 chr11 80615705 80615994 -68167478 + THE1A LTR MaLR 1 355 0 11435 73 11 78 chr11 80615994 80617688 -68165784 + THE1A-int LTR MaLR 1 1580 0 2668 77 6 25 chr11 80617688 80618050 -68165422 + THE1A LTR MaLR 1 355 0 286 336 44 0 chr11 80618095 80618208 -68165264 + MIR SINE MIR 94 211 -51 194 219 12 85 chr11 80618216 80618298 -68165174 + L2 LINE L2 3166 3241 -31 193 215 264 0 chr11 80619544 80619665 -68163807 - MIR3 SINE MIR -55 153 1 339 288 76 8 chr11 80619700 80619818 -68163654 + MIR3 SINE MIR 36 161 -47 331 352 74 11 chr11 80620137 80620313 -68163159 + MIR SINE MIR 68 254 -8 475 288 85 0 chr11 80622367 80622520 -68160952 - MIR3 SINE MIR -14 194 29 257 245 181 0 chr11 80623777 80623871 -68159601 - L3 LINE CR1 -100 1477 1367 297 290 137 14 chr11 80624831 80624961 -68158511 + MIR SINE MIR 21 166 -87 1243 113 94 30 chr11 80624962 80625165 -68158307 + AluJb SINE Alu 1 216 -96 333 207 0 0 chr11 80625188 80625275 -68158197 + A-rich Low_complexity Low_complexity 1 87 0 581 149 43 0 chr11 80625281 80625375 -68158097 + AluJb SINE Alu 199 296 -16 400 192 20 0 chr11 80625376 80625475 -68157997 + GA-rich Low_complexity Low_complexity 2 102 0 220 308 22 11 chr11 80625477 80625568 -68157904 + MIR SINE MIR 143 234 -28 284 276 112 0 chr11 80626145 80626261 -68157211 - MIR3 SINE MIR -2 206 78 763 164 178 7 chr11 80626273 80626425 -68157047 - MER45A DNA AcHobo 0 178 1 281 185 15 0 chr11 80627342 80627407 -68156065 + CT-rich Low_complexity Low_complexity 1 66 0 1524 189 91 0 chr11 80627407 80627693 -68155779 - AluJo SINE Alu 0 312 1 785 252 69 20 chr11 80628010 80628256 -68155216 + MIR SINE MIR 2 259 -3 282 254 90 3 chr11 80629001 80629128 -68154344 + MLT1H LTR MaLR 21 195 -354 449 238 74 0 chr11 80629222 80629344 -68154128 + MLT1H LTR MaLR 419 549 0 2331 108 0 0 chr11 80629760 80630067 -68153405 - AluSc SINE Alu 0 309 3 2288 94 7 3 chr11 80630068 80630367 -68153105 - AluSq SINE Alu -13 300 1 563 305 18 82 chr11 80630827 80631155 -68152317 + L2 LINE L2 2966 3272 0 353 313 70 7 chr11 80631160 80631303 -68152169 - MIR3 SINE MIR -65 143 1 764 160 0 28 chr11 80632109 80632290 -68151182 + GA-rich Low_complexity Low_complexity 3 178 0 897 150 0 0 chr11 80633058 80633191 -68150281 + FLAM_C SINE Alu 1 133 0 709 314 167 18 chr11 80633214 80633916 -68149556 - L2 LINE L2 -8 3305 2496 585 283 128 11 chr11 80633921 80634108 -68149364 - MIR SINE MIR -26 236 28 1923 149 10 13 chr11 80634562 80634871 -68148601 + AluSx SINE Alu 3 310 -2 2616 54 0 0 chr11 80634873 80635171 -68148301 + AluY SINE Alu 1 298 -13 1867 102 119 51 chr11 80635917 80636270 -68147202 - MER51B LTR ERV1 0 377 1 8714 103 34 19 chr11 80636271 80638088 -68145384 - MER51B-int LTR ERV1 0 7816 5735 2305 114 10 0 chr11 80638088 80638396 -68145076 + AluSx SINE Alu 1 311 -1 8714 103 34 19 chr11 80638396 80638891 -68144581 - MER51B-int LTR ERV1 -2081 5735 5249 5179 111 37 33 chr11 80638890 80639296 -68144176 - MER51B-int LTR ERV1 -1962 3053 2650 * 2134 98 46 7 chr11 80639296 80639581 -68143891 - AluY SINE Alu -15 296 1 5179 111 37 33 chr11 80639581 80640230 -68143242 - MER51B-int LTR ERV1 -2365 2650 1889 2157 104 10 13 chr11 80640230 80640528 -68142944 + AluSx SINE Alu 1 297 -15 5179 111 37 33 chr11 80640528 80640582 -68142890 - MER51B-int LTR ERV1 -3126 1889 1837 4667 78 16 5 chr11 80640582 80641603 -68141869 - MER11A LTR ERVK 0 1266 1 19248 126 28 18 chr11 80641603 80644818 -68138654 - MER51B-int LTR ERV1 -4153 3663 417 903 104 110 37 chr11 80644831 80644906 -68138566 - MER51B-int LTR ERV1 -7640 176 108 456 19 0 0 chr11 80644906 80644959 -68138513 + (GA)n Simple_repeat Simple_repeat 2 54 0 903 104 110 37 chr11 80644959 80645047 -68138425 - MER51B-int LTR ERV1 -7708 108 1 1656 105 26 8 chr11 80645047 80645379 -68138093 - MER51B LTR ERV1 0 377 22 591 265 98 17 chr11 80645512 80645799 -68137673 + L1ME LINE L1 5508 5817 -304 803 174 8 0 chr11 80645811 80645943 -68137529 + FLAM_C SINE Alu 1 133 0 480 18 0 0 chr11 80645969 80646026 -68137446 + (TCTCCC)n Simple_repeat Simple_repeat 5 61 0 6065 64 17 13 chr11 80646026 80647223 -68136249 + SVA Other Other 57 1047 -339 3009 195 29 10 chr11 80647293 80648252 -68135220 + L1MD2 LINE L1 4954 5931 -428 223 95 82 41 chr11 80648276 80648423 -68135049 + (TATAA)n Simple_repeat Simple_repeat 5 157 0 542 163 0 0 chr11 80648645 80648737 -68134735 - AluJb SINE Alu -13 299 208 296 297 46 86 chr11 80649007 80649237 -68134235 + MIR3 SINE MIR 7 235 -27 216 0 0 0 chr11 80649297 80649321 -68134151 + (TTCA)n Simple_repeat Simple_repeat 4 27 0 404 306 71 25 chr11 80649399 80649595 -68133877 - L2 LINE L2 -156 3116 2912 1903 171 0 7 chr11 80649879 80650189 -68133283 + AluJo SINE Alu 1 308 -4 3955 126 27 38 chr11 80650900 80651605 -68131867 + MER4D LTR ERV1 1 697 -175 16674 30 6 0 chr11 80651605 80654340 -68129132 - L1PA3 LINE L1 0 6155 3409 732 105 0 0 chr11 80654340 80654445 -68129027 - L1P LINE L1 -6041 105 1 935 113 0 0 chr11 80654458 80654582 -68128890 - FLAM_C SINE Alu -19 124 1 954 138 0 0 chr11 80655415 80655553 -68127919 - AluSx SINE Alu -19 291 154 609 78 13 0 chr11 80655553 80655630 -68127842 - AluSx SINE Alu -213 100 23 496 345 36 9 chr11 80655787 80656010 -68127462 + MIR SINE MIR 34 262 0 187 359 0 0 chr11 80656277 80656341 -68127131 + MIR SINE MIR 162 225 -37 987 91 0 71 chr11 80656873 80657027 -68126445 + FLAM_C SINE Alu 1 143 0 180 0 0 0 chr11 80657390 80657410 -68126062 + (TTG)n Simple_repeat Simple_repeat 2 21 0 240 35 0 0 chr11 80657450 80657479 -68125993 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 185 234 0 94 chr11 80657678 80657742 -68125730 + L2 LINE L2 3024 3081 -191 2133 152 81 34 chr11 80657827 80658022 -68125450 + MSTB LTR MaLR 1 185 -241 1406 186 64 64 chr11 80658022 80658318 -68125154 - AluJb SINE Alu -16 296 1 2133 152 81 34 chr11 80658318 80658529 -68124943 + MSTB LTR MaLR 185 426 0 1066 196 52 129 chr11 80658554 80658729 -68124743 - LTR56 LTR ERV1 0 445 258 1743 142 52 14 chr11 80658729 80659017 -68124455 + AluSx SINE Alu 14 312 0 1066 196 52 129 chr11 80659017 80659321 -68124151 - LTR56 LTR ERV1 -187 258 3 379 272 19 48 chr11 80659744 80659847 -68123625 + MIR SINE MIR 47 146 -62 248 163 41 0 chr11 80659849 80659898 -68123574 + MLT1A1 LTR MaLR 1 51 -323 26 64 0 0 chr11 80659898 80659945 -68123527 + AT_rich Low_complexity Low_complexity 1 47 0 1362 183 17 38 chr11 80659976 80660301 -68123171 + MLT1A1 LTR MaLR 36 416 -12 180 281 163 59 chr11 80660356 80660491 -68122981 - L2 LINE L2 -3 3269 3121 580 290 121 10 chr11 80660511 80660718 -68122754 - MIR SINE MIR -6 256 27 1164 174 0 0 chr11 80660840 80661030 -68122442 - AluJb SINE Alu -13 299 110 850 255 101 18 chr11 80661030 80661367 -68122105 - L2 LINE L2 -135 3178 2814 233 316 13 0 chr11 80661592 80661668 -68121804 + MIR SINE MIR 180 256 -6 184 258 43 75 chr11 80661679 80661772 -68121700 + L2 LINE L2 3141 3230 -42 264 329 44 48 chr11 80661797 80662025 -68121447 + L2 LINE L2 2513 2739 -575 448 307 154 11 chr11 80662576 80662843 -68120629 + L2 LINE L2 2578 2882 -432 181 298 21 0 chr11 80663052 80663099 -68120373 - L2 LINE L2 -3 3310 3263 255 361 67 0 chr11 80663672 80663791 -68119681 - L2 LINE L2 -46 3226 3100 214 287 32 11 chr11 80664435 80664529 -68118943 + CT-rich Low_complexity Low_complexity 2 97 0 442 267 267 9 chr11 80664662 80664887 -68118585 - MLT1G1 LTR MaLR -312 283 1 432 285 22 35 chr11 80664930 80665158 -68118314 + L1M4 LINE L1 2243 2467 -3679 252 316 84 0 chr11 80665212 80665307 -68118165 + L2 LINE L2 2985 3087 -185 22 35 0 0 chr11 80665918 80665947 -68117525 + AT_rich Low_complexity Low_complexity 1 29 0 432 121 0 0 chr11 80665957 80666015 -68117457 - AluJ/FLAM SINE Alu -241 71 14 439 314 49 5 chr11 80666018 80666203 -68117269 - L1ME3A LINE L1 -285 5885 5693 1740 148 52 14 chr11 80666203 80666494 -68116978 - AluJo SINE Alu -10 302 1 314 281 66 8 chr11 80666538 80666659 -68116813 - MIR SINE MIR -65 197 70 226 296 42 0 chr11 80667655 80667726 -68115746 - MIR SINE MIR -108 154 81 592 296 99 9 chr11 80667839 80668062 -68115410 + MIR SINE MIR 12 254 -8 319 93 0 0 chr11 80668182 80668225 -68115247 + MER51A-int LTR ERV1 7107 7149 -388 2587 45 0 3 chr11 80668229 80668538 -68114934 - AluY SINE Alu -1 310 3 604 167 87 0 chr11 80668559 80668685 -68114787 + LTR54B LTR ERV1 5 141 -357 2105 141 26 23 chr11 80668685 80669033 -68114439 + MER51A-int LTR ERV1 7468 7816 0 4238 89 55 34 chr11 80669034 80669655 -68113817 + MER51A LTR ERV1 1 634 0 273 323 31 10 chr11 80670340 80670436 -68113036 + MIR SINE MIR 116 213 -49 2022 153 0 0 chr11 80670439 80670740 -68112732 + AluJo SINE Alu 3 303 -9 2092 128 0 0 chr11 80670741 80671029 -68112443 + AluSq SINE Alu 2 289 -24 633 61 0 0 chr11 80671029 80671111 -68112361 + (TA)n Simple_repeat Simple_repeat 2 83 0 651 212 15 23 chr11 80671131 80671263 -68112209 + FLAM_A SINE Alu 3 133 0 306 73 0 0 chr11 80671306 80671347 -68112125 + (TGG)n Simple_repeat Simple_repeat 3 43 0 505 358 14 5 chr11 80671348 80671566 -68111906 - MIR SINE MIR -3 259 40 225 0 0 0 chr11 80671612 80671637 -68111835 + (ATTG)n Simple_repeat Simple_repeat 1 25 0 181 359 39 10 chr11 80671736 80671839 -68111633 - L2 LINE L2 -476 2838 2733 222 271 57 0 chr11 80671850 80671920 -68111552 - L2 LINE L2 -30 3242 3169 2228 113 6 13 chr11 80672012 80672323 -68111149 - AluSq SINE Alu -4 309 1 306 337 126 34 chr11 80672463 80672978 -68110494 - L2 LINE L2 -224 3048 2582 1767 139 91 0 chr11 80672978 80673252 -68110220 - AluJb SINE Alu -13 299 1 306 337 126 34 chr11 80673252 80673303 -68110169 - L2 LINE L2 -690 2582 2537 216 0 0 0 chr11 80673303 80673327 -68110145 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 306 337 126 34 chr11 80673327 80673407 -68110065 - L2 LINE L2 -735 2537 2314 2337 99 0 6 chr11 80673407 80673721 -68109751 + AluSx SINE Alu 1 312 0 1488 120 5 0 chr11 80673721 80673929 -68109543 + AluSg/x SINE Alu 102 310 0 251 284 14 0 chr11 80673984 80674058 -68109414 + MLT1L LTR MaLR 1 75 -540 255 122 0 24 chr11 80674206 80674247 -68109225 + (TCCC)n Simple_repeat Simple_repeat 1 40 0 959 144 0 0 chr11 80674249 80674505 -68108967 - FLAM_C SINE Alu 0 256 1 582 174 200 32 chr11 80674614 80674804 -68108668 + MLT1J LTR MaLR 287 508 -3 719 280 11 0 chr11 80676138 80676320 -68107152 + MIR SINE MIR 2 185 -77 2115 125 3 0 chr11 80676336 80676624 -68106848 + AluSx SINE Alu 1 289 -23 280 265 121 0 chr11 80676644 80676727 -68106745 + L2 LINE L2 3221 3313 0 330 294 169 0 chr11 80677338 80677498 -68105974 + L1ME4a LINE L1 5854 6040 -81 2322 94 3 0 chr11 80677504 80677803 -68105669 - AluSx SINE Alu -4 308 9 1506 211 10 22 chr11 80677823 80678182 -68105290 - AluJo SINE Alu 0 355 1 605 269 122 40 chr11 80678262 80678509 -68104963 + L1ME3A LINE L1 5541 5831 -339 1636 168 29 23 chr11 80678509 80678819 -68104653 + AluJo SINE Alu 1 312 0 605 269 122 40 chr11 80678819 80678947 -68104525 + L1ME3A LINE L1 5831 5947 -223 30 45 0 0 chr11 80679171 80679215 -68104257 + AT_rich Low_complexity Low_complexity 1 44 0 21 36 0 0 chr11 80679342 80679370 -68104102 + AT_rich Low_complexity Low_complexity 1 28 0 886 300 16 23 chr11 80679551 80679808 -68103664 + MIR SINE MIR 7 261 -1 428 234 157 86 chr11 80680376 80680471 -68103001 + L1ME4a LINE L1 5729 5816 -305 1767 166 14 3 chr11 80680471 80680766 -68102706 - AluJo SINE Alu -10 302 5 428 234 157 86 chr11 80680766 80681021 -68102451 + L1ME4a LINE L1 5816 6104 -17 1982 139 7 0 chr11 80681034 80681359 -68102113 + AluSq SINE Alu 1 327 0 4758 162 13 38 chr11 80681363 80682149 -68101323 - L1MB8 LINE L1 -16 6162 5424 2501 68 0 0 chr11 80682149 80682458 -68101014 - AluY SINE Alu -2 309 1 4758 162 13 38 chr11 80682458 80683211 -68100261 - L1MB8 LINE L1 -754 5424 4654 233 146 209 45 chr11 80683626 80683736 -68099736 - Charlie7 DNA MER1_type -46 2566 2439 238 235 0 111 chr11 80683798 80683879 -68099593 + L2 LINE L2 3180 3251 -21 1690 137 34 31 chr11 80683899 80684192 -68099280 + AluSx SINE Alu 1 294 -18 2366 82 7 3 chr11 80684233 80684536 -68098936 + AluSc SINE Alu 1 304 -5 897 159 28 28 chr11 80685086 80685308 -68098164 - AluJb SINE Alu 0 322 101 330 291 53 121 chr11 80685958 80686429 -68097043 - L1M2 LINE L1 -5624 1225 787 491 319 173 14 chr11 80687719 80688014 -68095458 + L3 LINE CR1 1128 1469 -108 1802 172 7 7 chr11 80688139 80688441 -68095031 + AluJo SINE Alu 1 302 -10 496 303 114 14 chr11 80688878 80689089 -68094383 - MIR SINE MIR 0 262 31 5091 164 21 103 chr11 80689469 80689792 -68093680 - Tigger6a DNA MER2_type -514 1083 735 2336 97 3 0 chr11 80689792 80690091 -68093381 - AluSx SINE Alu -10 302 3 5091 164 21 103 chr11 80690091 80690178 -68093294 - Tigger6a DNA MER2_type -862 735 642 1864 143 7 43 chr11 80690178 80690479 -68092993 - AluJb SINE Alu -22 290 1 5091 164 21 103 chr11 80690479 80690706 -68092766 - Tigger6a DNA MER2_type -955 642 398 2171 122 0 0 chr11 80690706 80691002 -68092470 - AluSx SINE Alu -15 297 2 2029 124 16 44 chr11 80691005 80691320 -68092152 - AluSx SINE Alu -6 306 1 5091 164 21 103 chr11 80691320 80691851 -68091621 - Tigger6a DNA MER2_type -1201 396 5 430 257 27 68 chr11 80691855 80692003 -68091469 - MIR SINE MIR -74 188 47 546 194 0 0 chr11 80692150 80692248 -68091224 - L1M3 LINE L1 -390 5781 5684 187 225 0 0 chr11 80692282 80692322 -68091150 - L2 LINE L2 -1 3312 3273 2306 119 0 0 chr11 80692381 80692692 -68090780 + AluSx SINE Alu 1 311 -1 226 290 130 10 chr11 80692759 80692859 -68090613 - Tigger8 DNA MER2_type -13 653 542 369 0 0 0 chr11 80693586 80693627 -68089845 + (TG)n Simple_repeat Simple_repeat 2 42 0 3585 147 105 107 chr11 80693632 80694515 -68088957 + MER21A LTR ERV1 33 914 -17 3129 117 25 41 chr11 80694663 80695059 -68088413 - L1MB2 LINE L1 -2 6169 5768 1692 203 0 0 chr11 80695059 80695354 -68088118 - AluJb SINE Alu -17 295 1 1486 157 119 11 chr11 80695356 80695624 -68087848 - AluJb SINE Alu -13 299 3 3129 117 25 41 chr11 80695624 80695735 -68087737 - L1MB2 LINE L1 -404 5767 5667 21 0 0 0 chr11 80695851 80695872 -68087600 + AT_rich Low_complexity Low_complexity 1 21 0 611 274 59 30 chr11 80696107 80696344 -68087128 - MIR SINE MIR 0 262 19 260 184 0 0 chr11 80696381 80696430 -68087042 - L1ME3 LINE L1 -8 6154 6106 4170 145 33 40 chr11 80696430 80697222 -68086250 - MER4D LTR ERV1 0 864 103 2094 120 3 0 chr11 80697277 80697568 -68085904 - AluSx SINE Alu -20 292 1 376 329 48 34 chr11 80697660 80697806 -68085666 - MIR3 SINE MIR -32 176 29 317 289 240 0 chr11 80697957 80698061 -68085411 - MER5A DNA MER1_type 0 189 61 1891 124 46 29 chr11 80698061 80698399 -68085073 - AluJo SINE Alu 0 343 1 384 211 0 0 chr11 80698399 80698470 -68085002 - MER5A DNA MER1_type -115 74 4 342 301 129 34 chr11 80699361 80699570 -68083902 + MIR SINE MIR 28 256 -6 1624 151 15 4 chr11 80699650 80699915 -68083557 + MLT2C1 LTR ERVL 1 268 -129 2262 100 3 13 chr11 80700297 80700608 -68082864 - AluSg SINE Alu -2 308 1 320 258 36 118 chr11 80700618 80700839 -68082633 - L1MC4 LINE L1 0 8042 7840 1439 107 15 0 chr11 80700924 80701120 -68082352 - AluSg/x SINE Alu -6 306 108 974 162 0 18 chr11 80701119 80701286 -68082186 - AluYa8 SINE Alu -146 164 1 * 2831 178 97 39 chr11 80701286 80701948 -68081524 - L1ME2 LINE L1 -32 6132 5433 244 284 0 30 chr11 80702736 80702803 -68080669 + 7SK RNA RNA 1 65 -128 879 255 44 79 chr11 80702954 80703424 -68080048 - L1ME3A LINE L1 -219 5951 5592 653 75 0 0 chr11 80703428 80703508 -68079964 + MADE1 DNA Mariner 1 80 0 865 130 62 0 chr11 80703514 80703660 -68079812 - Charlie1 DNA MER1_type -6 2755 2601 2684 206 75 8 chr11 80703677 80704557 -68078915 - L1ME2 LINE L1 -304 5794 4843 1869 200 69 36 chr11 80704557 80705078 -68078394 - L1ME2 LINE L1 -1922 4158 3621 1065 229 115 19 chr11 80705072 80705491 -68077981 - L1ME2 LINE L1 -2693 3387 2929 * 1707 158 36 7 chr11 80705494 80705772 -68077700 - MER21B LTR ERV1 -10 853 568 1151 169 41 9 chr11 80705778 80706035 -68077437 - MER39 LTR ERV1 -288 419 10 461 186 32 1 chr11 80706057 80706167 -68077305 + MLT1A1 LTR MaLR 48 170 -204 1768 174 7 3 chr11 80706169 80706463 -68077009 + AluJb SINE Alu 5 299 -13 776 255 130 46 chr11 80706533 80707011 -68076461 - L1ME2 LINE L1 -4150 2111 1594 2793 255 60 39 chr11 80707017 80707195 -68076277 - L1ME2 LINE L1 -4902 1178 1005 2450 67 3 3 chr11 80707195 80707495 -68075977 - AluY SINE Alu -11 300 1 2793 255 60 39 chr11 80707495 80708480 -68074992 - L1ME2 LINE L1 -5075 1005 2 567 262 119 37 chr11 80708451 80708621 -68074851 - L1MEc LINE L1 -5349 912 757 * 2295 112 6 13 chr11 80708621 80708934 -68074538 - AluSx SINE Alu -1 311 1 567 262 119 37 chr11 80708934 80709198 -68074274 - L1MEc LINE L1 -5504 757 442 597 274 78 29 chr11 80709404 80709649 -68073823 - L1MEc LINE L1 -6104 292 36 541 264 66 18 chr11 80709775 80709943 -68073529 - L1MEd LINE L1 -3572 2557 2374 1931 148 3 25 chr11 80709943 80710260 -68073212 - AluJo SINE Alu -2 310 1 541 264 66 18 chr11 80710260 80710318 -68073154 - L1MEd LINE L1 -3755 2374 2320 2140 199 63 30 chr11 80710408 80710475 -68072997 - MER74A LTR ERVL -12 546 483 1375 64 0 12 chr11 80710475 80710646 -68072826 - L1PA8 LINE L1 -3 6169 6001 2140 199 63 30 chr11 80710646 80711102 -68072370 - MER74A LTR ERVL -75 483 6 869 295 98 25 chr11 80711107 80711614 -68071858 - L2 LINE L2 -46 3267 2722 1935 125 11 0 chr11 80711885 80712157 -68071315 - AluSx SINE Alu -25 287 13 1242 120 73 16 chr11 80712259 80712450 -68071022 + AluJb SINE Alu 85 286 -26 23 105 0 0 chr11 80712683 80712769 -68070703 + AT_rich Low_complexity Low_complexity 1 86 0 180 103 0 103 chr11 80712783 80712822 -68070650 + MIR SINE MIR 166 200 -62 2001 129 3 7 chr11 80713003 80713289 -68070183 - AluJb SINE Alu -5 307 23 2088 215 80 33 chr11 80713607 80714119 -68069353 - MLT1E LTR MaLR -57 536 1 822 284 52 69 chr11 80714162 80714609 -68068863 - L1MEd LINE L1 -5664 455 17 180 315 41 14 chr11 80714848 80714921 -68068551 + L2 LINE L2 2896 2970 -343 607 318 70 33 chr11 80714942 80715301 -68068171 - L1MEd LINE L1 -5101 1018 647 560 203 34 0 chr11 80715305 80715423 -68068049 + L2 LINE L2 3192 3313 0 447 349 47 13 chr11 80715450 80715599 -68067873 + L2 LINE L2 3117 3270 -2 2088 111 14 3 chr11 80716031 80716319 -68067153 + AluSx SINE Alu 3 293 -19 235 0 57 0 chr11 80716429 80716464 -68067008 + (TA)n Simple_repeat Simple_repeat 2 38 0 958 123 84 45 chr11 80716464 80716643 -68066829 + MER21A LTR ERV1 25 210 -721 * 2120 168 31 28 chr11 80716639 80717063 -68066409 + MER21B LTR ERV1 435 859 -4 355 337 56 20 chr11 80717275 80717471 -68066001 + MIR SINE MIR 54 256 -6 21 0 0 0 chr11 80717530 80717551 -68065921 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr11 80717873 80717904 -68065568 + AT_rich Low_complexity Low_complexity 1 31 0 2019 186 33 9 chr11 80717986 80718406 -68065066 + L1 LINE L1 4125 4554 -1592 1096 169 0 0 chr11 80718413 80718591 -68064881 + FRAM SINE Alu 1 176 0 313 250 83 83 chr11 80718613 80718733 -68064739 + MIR SINE MIR 53 172 -90 699 188 8 0 chr11 80718733 80718850 -68064622 + FLAM_A SINE Alu 4 121 -12 1889 134 45 3 chr11 80719200 80719490 -68063982 + AluJo SINE Alu 1 302 -10 377 301 105 0 chr11 80719665 80719808 -68063664 + MIR SINE MIR 47 204 -58 427 337 46 40 chr11 80720201 80720504 -68062968 - L1M4 LINE L1 -1098 5048 4744 268 336 62 34 chr11 80720692 80720838 -68062634 + MIR3 SINE MIR 11 160 -48 293 314 58 6 chr11 80720974 80721130 -68062342 + L1MC/D LINE L1 5684 5848 -336 874 144 8 0 chr11 80721568 80721700 -68061772 + FLAM_C SINE Alu 1 133 0 364 179 51 0 chr11 80721907 80721985 -68061487 - Charlie1a DNA MER1_type -6 1449 1368 4943 167 35 52 chr11 80721996 80722118 -68061354 - Charlie1a DNA MER1_type -1607 1154 1031 2119 134 3 0 chr11 80722118 80722448 -68061024 - AluSx SINE Alu 0 331 1 4943 167 35 52 chr11 80722448 80723451 -68060021 - Charlie1a DNA MER1_type -1730 1031 47 775 203 0 0 chr11 80723564 80723697 -68059775 - FLAM_A SINE Alu 0 133 1 2827 13 0 0 chr11 80723814 80724125 -68059347 + AluYa5 SINE Alu 1 311 0 231 276 17 0 chr11 80724377 80724435 -68059037 - MIR SINE MIR -1 261 203 1170 131 51 55 chr11 80725002 80725238 -68058234 - Tigger2 DNA MER2_type 0 2718 2484 780 186 0 0 chr11 80725239 80725363 -68058109 + FLAM_C SINE Alu 1 124 -19 2520 87 44 3 chr11 80725363 80725730 -68057742 - Tigger2 DNA MER2_type -232 2486 2105 632 241 0 0 chr11 80725730 80725846 -68057626 + FLAM_C SINE Alu 1 116 -27 5056 123 30 29 chr11 80725868 80726701 -68056771 - Tigger2 DNA MER2_type -596 2122 1289 2017 172 87 35 chr11 80726701 80727161 -68056311 - LTR2B LTR ERV1 0 490 7 8721 110 17 2 chr11 80727166 80728435 -68055037 - Tigger2 DNA MER2_type -1428 1290 2 4778 115 31 56 chr11 80728649 80729181 -68054291 + MER4D LTR ERV1 25 529 -374 1984 140 0 32 chr11 80729181 80729489 -68053983 - AluSx SINE Alu -14 298 1 4778 115 31 56 chr11 80729489 80729828 -68053644 + MER4D LTR ERV1 529 875 -28 291 331 81 19 chr11 80729845 80730005 -68053467 + ERVL LTR ERVL 3489 3658 -2106 258 32 0 0 chr11 80730030 80730061 -68053411 + (TG)n Simple_repeat Simple_repeat 2 32 0 2071 124 3 0 chr11 80730061 80730344 -68053128 - AluSx SINE Alu -28 284 1 461 230 78 30 chr11 80730793 80731081 -68052391 + L1ME3 LINE L1 5667 5824 -297 2001 178 122 105 chr11 80731174 80731889 -68051583 + LTR8A LTR ERV1 1 727 0 774 169 0 44 chr11 80731915 80732051 -68051421 - FLAM_C SINE Alu -1 132 3 1940 153 3 3 chr11 80732781 80733081 -68050391 + AluSx SINE Alu 1 300 -12 2215 104 0 0 chr11 80733147 80733427 -68050045 + AluSx SINE Alu 2 281 -31 8320 75 3 3 chr11 80733518 80735478 -68047994 + L1PA7 LINE L1 4214 6154 0 289 214 0 0 chr11 80735733 80735789 -68047683 - MIR SINE MIR -111 151 96 344 275 94 19 chr11 80735862 80736022 -68047450 + L1ME LINE L1 5409 5580 -541 250 284 14 0 chr11 80736068 80736142 -68047330 + L1ME LINE L1 5789 5863 -258 3733 119 58 5 chr11 80736234 80736821 -68046651 - MER41B LTR ERV1 -17 618 1 1088 216 42 58 chr11 80737226 80737628 -68045844 + MLT1C LTR MaLR 8 467 0 259 249 80 27 chr11 80737629 80737763 -68045709 + L1ME LINE L1 5695 5829 -292 1120 178 20 5 chr11 80738007 80738209 -68045263 - MER50 LTR ERV1 0 734 530 4386 29 0 0 chr11 80738239 80738751 -68044721 - L1PA5 LINE L1 -1671 4475 3964 7178 37 15 5 chr11 80738751 80740395 -68043077 + L1PA5 LINE L1 4499 6154 0 350 257 21 14 chr11 80740489 80740629 -68042843 - MER50 LTR ERV1 -298 436 296 280 286 214 0 chr11 80740689 80740815 -68042657 - MER50 LTR ERV1 -572 162 10 1869 143 58 28 chr11 80740821 80741184 -68042288 - THE1C LTR MaLR -1 374 1 29 84 0 0 chr11 80742530 80742601 -68040871 + AT_rich Low_complexity Low_complexity 1 71 0 807 161 8 0 chr11 80742627 80742757 -68040715 + AluJo SINE Alu 4 134 -178 1819 152 19 29 chr11 80742767 80743082 -68040390 + AluJo SINE Alu 1 312 0 227 429 37 37 chr11 80743131 80743399 -68040073 + L2 LINE L2 2997 3264 -8 334 169 0 0 chr11 80743738 80743797 -68039675 - L1PA13 LINE L1 -2 6161 6103 382 257 37 9 chr11 80743924 80744038 -68039434 - MIR SINE MIR -63 145 49 2233 241 85 24 chr11 80745103 80745822 -68037650 + LTR41 LTR ERVL 1 763 -10 1851 162 0 13 chr11 80745827 80746129 -68037343 - AluJo SINE Alu -12 300 3 563 210 12 19 chr11 80746334 80746496 -68036976 - L1M4 LINE L1 -1006 5140 4980 263 163 23 0 chr11 80746524 80746567 -68036905 - MER57A LTR ERV1 -65 338 295 653 235 147 17 chr11 80746567 80746986 -68036486 - L1M4 LINE L1 -1149 4997 4383 182 194 0 0 chr11 80747042 80747073 -68036399 - L3 LINE CR1 -308 1269 1239 235 349 47 38 chr11 80747360 80747678 -68035794 - L3 LINE CR1 -711 866 546 23 33 0 0 chr11 80747793 80747823 -68035649 + AT_rich Low_complexity Low_complexity 1 30 0 377 332 61 69 chr11 80747856 80748103 -68035369 + MIR SINE MIR 12 256 -6 313 225 14 123 chr11 80748200 80748338 -68035134 - HAL1 LINE L1 0 2507 2385 566 133 67 15 chr11 80748359 80748494 -68034978 - L1MA10 LINE L1 -10 6324 6183 271 219 24 49 chr11 80748531 80748613 -68034859 - L1ME1 LINE L1 -169 5997 5918 * 2659 227 58 52 chr11 80748599 80749521 -68033951 - L1MEc LINE L1 -5318 924 35 251 27 0 27 chr11 80749539 80749576 -68033896 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 803 142 8 0 chr11 80749576 80749696 -68033776 - FLAM_C SINE Alu -22 121 1 22 0 0 0 chr11 80749699 80749721 -68033751 + AT_rich Low_complexity Low_complexity 1 22 0 548 259 61 50 chr11 80749721 80749999 -68033473 - HAL1 LINE L1 -156 2351 2071 1293 124 11 0 chr11 80750001 80750187 -68033285 + AluSg/x SINE Alu 116 303 -9 252 275 121 0 chr11 80750428 80750519 -68032953 + L1MC/D LINE L1 5615 5716 -2092 394 226 20 29 chr11 80750526 80750628 -68032844 + L1MC/D LINE L1 5683 5783 -2025 732 288 84 27 chr11 80750670 80751076 -68032396 - HAL1 LINE L1 -550 1957 1529 226 173 107 13 chr11 80751266 80751341 -68032131 - MER5C DNA MER1_type -90 234 153 346 238 152 7 chr11 80751498 80751649 -68031823 - L1MEc LINE L1 -4682 1714 1542 30115 40 1 2 chr11 80752653 80757147 -68026325 - L1PA5 LINE L1 0 6154 1663 2024 142 7 3 chr11 80757147 80757443 -68026029 - AluJb SINE Alu -15 297 1 191 86 0 29 chr11 80758352 80758387 -68025085 + (TA)n Simple_repeat Simple_repeat 2 35 0 10683 50 14 66 chr11 80758475 80759936 -68023536 - SVA Other Other 0 1386 1 198 71 0 0 chr11 80759946 80759974 -68023498 + (GGGAGA)n Simple_repeat Simple_repeat 1 28 0 795 302 52 43 chr11 80760348 80760924 -68022548 + HAL1b LINE L1 34 614 -734 1147 178 35 0 chr11 80760928 80761130 -68022342 - MER3 DNA MER1_type 0 209 1 927 112 65 53 chr11 80761209 80761378 -68022094 - THE1B LTR MaLR 0 364 194 271 241 29 80 chr11 80761446 80761583 -68021889 + L1MC4a LINE L1 4823 4952 -1194 2023 229 139 34 chr11 80761873 80761899 -68021573 + L1MC4a LINE L1 5255 5277 -2531 2125 138 3 0 chr11 80761899 80762210 -68021262 - AluSx SINE Alu 0 312 1 2023 229 139 34 chr11 80762210 80763008 -68020464 + L1MC4a LINE L1 5277 6166 -1642 262 268 51 38 chr11 80763029 80763186 -68020286 + L1MC4a LINE L1 6288 6446 -1362 1674 180 4 4 chr11 80763222 80763500 -68019972 - AluJb SINE Alu -26 286 9 1670 190 3 3 chr11 80763522 80763812 -68019660 - AluJb SINE Alu -22 290 1 2321 192 123 183 chr11 80763821 80764587 -68018885 + L1MC4a LINE L1 6479 7289 -753 1167 186 4 26 chr11 80764587 80764813 -68018659 + AluJb SINE Alu 86 306 -6 2321 192 123 183 chr11 80764813 80765343 -68018129 + L1MC4a LINE L1 7289 7899 -143 822 134 0 30 chr11 80765343 80765477 -68017995 - FLAM_C SINE Alu -3 130 1 2321 192 123 183 chr11 80765477 80765586 -68017886 + L1MC4a LINE L1 7899 8013 -29 23 0 0 0 chr11 80765604 80765627 -68017845 + AT_rich Low_complexity Low_complexity 1 23 0 232 316 119 37 chr11 80765864 80766082 -68017390 + L2 LINE L2 3078 3313 0 399 41 0 0 chr11 80766206 80766255 -68017217 + (CA)n Simple_repeat Simple_repeat 2 50 0 185 262 0 0 chr11 80766553 80766595 -68016877 - L2 LINE L2 -4 3309 3268 43 20 0 0 chr11 80766651 80766701 -68016771 + AT_rich Low_complexity Low_complexity 1 50 0 333 167 17 0 chr11 80766708 80766768 -68016704 - L1P LINE L1 -1394 5454 5394 11116 202 31 21 chr11 80766769 80767092 -68016380 - L1 LINE L1 -1418 5430 5112 192 77 0 0 chr11 80767092 80767118 -68016354 + (TTA)n Simple_repeat Simple_repeat 2 27 0 11116 202 31 21 chr11 80767118 80771082 -68012390 - L1 LINE L1 -1736 5112 1067 226 321 64 0 chr11 80771235 80771344 -68012128 - L1 LINE L1 -6069 780 665 367 319 26 26 chr11 80771483 80771599 -68011873 - L1 LINE L1 -6069 780 665 1286 311 19 5 chr11 80771944 80772375 -68011097 - L1 LINE L1 -6399 450 14 339 200 0 0 chr11 80772466 80772526 -68010946 - MER74B LTR ERVL -96 526 467 489 32 0 16 chr11 80773407 80773469 -68010003 + (TG)n Simple_repeat Simple_repeat 2 62 0 464 264 115 20 chr11 80774087 80774235 -68009237 - MIR SINE MIR -76 186 25 549 243 20 40 chr11 80775397 80775549 -68007923 - L2 LINE L2 -451 2863 2715 1209 170 9 28 chr11 80775652 80775870 -68007602 - AluJb SINE Alu -98 214 1 303 365 43 0 chr11 80776786 80776901 -68006571 - L2 LINE L2 -2 3270 3151 372 208 64 52 chr11 80777155 80777244 -68006228 + L1MC4 LINE L1 7823 7909 -133 261 0 0 0 chr11 80777244 80777273 -68006199 + (CA)n Simple_repeat Simple_repeat 2 30 0 372 208 64 52 chr11 80777273 80777356 -68006116 + L1MC4 LINE L1 7909 7997 -45 2400 92 0 0 chr11 80777356 80777662 -68005810 - AluSg SINE Alu -4 306 1 279 164 173 9 chr11 80777845 80777955 -68005517 - Charlie7 DNA MER1_type -47 2565 2438 2324 110 3 0 chr11 80777977 80778286 -68005186 - AluSx SINE Alu -2 310 1 257 263 40 0 chr11 80778288 80778364 -68005108 - Charlie7 DNA MER1_type -2522 90 12 2281 116 3 0 chr11 80778637 80778938 -68004534 + AluSx SINE Alu 1 302 -10 273 135 0 0 chr11 80778991 80779043 -68004429 - L1MC4 LINE L1 0 8042 7991 973 92 0 0 chr11 80779045 80779165 -68004307 + AluSg SINE Alu 1 120 -190 2428 86 3 0 chr11 80779337 80779638 -68003834 - AluSp SINE Alu -11 302 1 355 349 96 78 chr11 80779708 80779983 -68003489 + L2 LINE L2 2859 3145 -127 1891 174 7 3 chr11 80779983 80780293 -68003179 - AluJb SINE Alu -1 311 1 355 349 96 78 chr11 80780293 80780415 -68003057 + L2 LINE L2 3145 3263 -9 3209 176 55 36 chr11 80780430 80780758 -68002714 + L1MB7 LINE L1 5409 5729 -455 1541 155 9 133 chr11 80780758 80781185 -68002287 - MLT1A2 LTR MaLR 0 374 1 3209 176 55 36 chr11 80781185 80781606 -68001866 + L1MB7 LINE L1 5729 6172 -12 353 338 114 44 chr11 80782377 80782649 -68000823 + L2 LINE L2 2963 3253 -19 2120 129 3 3 chr11 80782840 80783135 -68000337 - AluSx SINE Alu -17 295 1 29 0 0 0 chr11 80783329 80783358 -68000114 + AT_rich Low_complexity Low_complexity 1 29 0 833 144 0 0 chr11 80783370 80783488 -67999984 - FLAM_C SINE Alu -15 118 1 2351 106 0 0 chr11 80783576 80783879 -67999593 - AluSq SINE Alu -10 303 1 777 93 429 0 chr11 80784826 80784932 -67998540 - MER30 DNA MER1_type 0 230 171 2426 99 0 3 chr11 80784932 80785246 -67998226 - AluSq SINE Alu 0 313 1 777 93 429 0 chr11 80785246 80785300 -67998172 - MER30 DNA MER1_type -59 171 1 675 161 91 112 chr11 80785420 80785521 -67997951 - MER33 DNA MER1_type -2274 311 209 2197 103 0 0 chr11 80785521 80785803 -67997669 + AluSc SINE Alu 1 282 -27 675 161 91 112 chr11 80785803 80785986 -67997486 - MER33 DNA MER1_type -2376 209 33 2066 200 34 78 chr11 80786536 80787177 -67996295 + L1MC4 LINE L1 6461 7073 -969 613 222 80 0 chr11 80787224 80787386 -67996086 + L1MC4a LINE L1 7159 7333 -475 1137 152 0 11 chr11 80787431 80787609 -67995863 - AluSp SINE Alu -4 309 134 2232 93 13 20 chr11 80787609 80787911 -67995561 - AluSx SINE Alu -12 300 1 251 56 28 0 chr11 80787926 80787962 -67995510 - MER4D LTR ERV1 -37 866 830 1860 147 70 3 chr11 80787968 80788295 -67995177 - MER41E LTR ERV1 0 512 164 381 187 66 11 chr11 80788493 80788584 -67994888 + LTR25 LTR ERV1 261 356 -438 441 171 67 9 chr11 80788774 80788879 -67994593 + LTR25 LTR ERV1 664 774 -20 1031 99 7 0 chr11 80788901 80789052 -67994420 - MER41E LTR ERV1 -343 169 18 350 186 57 0 chr11 80789139 80789209 -67994263 - MER4E LTR ERV1 -600 179 106 42187 37 4 0 chr11 80789226 80795348 -67988124 + L1PA4 LINE L1 6 6152 -3 1186 149 34 45 chr11 80795387 80795689 -67987783 - MER4D LTR ERV1 -628 295 1 1151 229 70 8 chr11 80795692 80796080 -67987392 + L1MC4 LINE L1 7413 7824 -218 2172 137 52 20 chr11 80796139 80796585 -67986887 - L1MB7 LINE L1 -43 6141 5682 2387 77 3 0 chr11 80796652 80796949 -67986523 + AluSc SINE Alu 1 298 -11 2118 135 69 84 chr11 80796957 80797491 -67985981 - LTR49 LTR ERV1 -69 526 1 1859 143 87 13 chr11 80797492 80797944 -67985528 - L1MB7 LINE L1 -501 5677 5188 550 179 205 0 chr11 80798529 80798685 -67984787 + MLT1D LTR MaLR 301 488 -17 2349 207 46 7 chr11 80799072 80799638 -67983834 - L1MB7 LINE L1 -943 5203 4616 265 350 65 38 chr11 80799951 80800137 -67983335 - L2 LINE L2 -275 3038 2848 309 240 62 0 chr11 80800205 80800301 -67983171 - L1MC4 LINE L1 -216 7826 7725 374 143 0 0 chr11 80800301 80800383 -67983089 + AluS SINE Alu 227 280 -21 394 282 68 26 chr11 80800600 80800717 -67982755 + L2 LINE L2 3185 3306 -7 180 111 0 0 chr11 80800804 80800831 -67982641 + (TTA)n Simple_repeat Simple_repeat 2 28 0 2059 148 0 22 chr11 80801261 80801578 -67981894 - AluJb SINE Alu -2 310 1 23 0 0 0 chr11 80801761 80801784 -67981688 + AT_rich Low_complexity Low_complexity 1 23 0 391 288 69 25 chr11 80802391 80802551 -67980921 - MIR SINE MIR -10 252 86 7282 161 153 22 chr11 80803022 80804573 -67978899 + MER52A LTR ERV1 1 1755 0 1423 128 0 24 chr11 80804846 80805057 -67978415 + AluSg/x SINE Alu 86 291 -21 903 200 6 11 chr11 80805066 80805246 -67978226 - MER58A DNA MER1_type 0 224 46 1938 153 7 0 chr11 80805249 80805543 -67977929 + AluJo SINE Alu 1 296 -16 1739 163 13 20 chr11 80805786 80806092 -67977380 + AluJb SINE Alu 1 304 -8 275 298 193 9 chr11 80806148 80806262 -67977210 + MIR SINE MIR 54 188 -74 303 390 41 14 chr11 80806269 80806415 -67977057 - L2 LINE L2 0 3272 3123 255 284 9 9 chr11 80806751 80806766 -67976706 - L1MA10 LINE L1 -2 6332 6318 2712 223 81 33 chr11 80806766 80807603 -67975869 - L1ME2 LINE L1 -9 6155 5360 2482 76 0 0 chr11 80807603 80807906 -67975566 - AluSc SINE Alu -6 303 1 2712 223 81 33 chr11 80807906 80808713 -67974759 - L1ME2 LINE L1 -804 5360 4365 1804 164 14 0 chr11 80808713 80809006 -67974466 - AluJb SINE Alu -15 297 1 2712 223 81 33 chr11 80809006 80809146 -67974326 - L1ME2 LINE L1 -1799 4365 4233 2146 90 17 10 chr11 80809188 80809478 -67973994 - AluSg SINE Alu -16 294 3 220 304 0 14 chr11 80809520 80809589 -67973883 - L2 LINE L2 -5 3267 3200 250 310 207 0 chr11 80809789 80809905 -67973567 - MIR3 SINE MIR -9 199 60 357 359 53 0 chr11 80809993 80810124 -67973348 - L2 LINE L2 -19 3253 3116 1153 165 138 0 chr11 80810536 80810754 -67972718 - AluJb SINE Alu -23 289 42 271 315 94 105 chr11 80811571 80811857 -67971615 - L2 LINE L2 -4 3268 2986 242 265 12 12 chr11 80811940 80812023 -67971449 - MIR SINE MIR -6 256 174 2238 106 0 3 chr11 80812180 80812483 -67970989 + AluSx SINE Alu 6 307 -5 662 331 122 50 chr11 80812488 80813048 -67970424 - L2 LINE L2 -557 2757 2110 2012 142 3 10 chr11 80813048 80813344 -67970128 + AluJb SINE Alu 1 294 -18 662 331 122 50 chr11 80813344 80813664 -67969808 - L2 LINE L2 -1204 2110 1814 2389 121 5 18 chr11 80813712 80814092 -67969380 - THE1C LTR MaLR 0 375 1 632 234 98 11 chr11 80814227 80814411 -67969061 + MIR SINE MIR 12 211 -51 25 0 0 0 chr11 80814690 80814715 -67968757 + AT_rich Low_complexity Low_complexity 1 25 0 205 326 128 74 chr11 80814756 80815093 -67968379 - L2 LINE L2 -91 3181 2827 361 253 247 11 chr11 80815391 80815577 -67967895 - MIR SINE MIR -12 250 21 250 200 0 40 chr11 80816107 80816157 -67967315 - Charlie8 DNA MER1_type -1002 1415 1368 565 233 109 21 chr11 80816464 80816657 -67966815 - MIR SINE MIR -18 244 35 2517 93 0 0 chr11 80816924 80817236 -67966236 + AluSx SINE Alu 1 312 0 1376 153 60 71 chr11 80817336 80817604 -67965868 + AluJo SINE Alu 1 265 -47 21 0 0 0 chr11 80817610 80817631 -67965841 + AT_rich Low_complexity Low_complexity 1 21 0 245 321 12 12 chr11 80818048 80818132 -67965340 - L2 LINE L2 0 3313 3230 370 255 32 11 chr11 80818151 80818245 -67965227 + MIR SINE MIR 37 132 -130 1498 176 13 36 chr11 80818265 80818566 -67964906 - AluJb SINE Alu -18 294 1 415 207 27 36 chr11 80818568 80818679 -67964793 - L2 LINE L2 -12 3301 3192 280 220 220 0 chr11 80818684 80818775 -67964697 + MIR SINE MIR 152 262 0 2322 113 63 6 chr11 80819032 80819351 -67964121 - MER1B DNA MER1_type 0 337 1 2107 128 7 0 chr11 80819523 80819820 -67963652 - AluSx SINE Alu -13 299 1 921 154 0 0 chr11 80819820 80819956 -67963516 - AluSq/x SINE Alu -177 136 1 196 388 84 13 chr11 80820194 80820431 -67963041 - L2 LINE L2 -466 2848 2595 918 272 60 8 chr11 80820563 80820831 -67962641 + L2 LINE L2 2840 3121 -192 972 297 100 38 chr11 80821279 80821789 -67961683 + L2 LINE L2 2217 2694 -620 2175 101 3 7 chr11 80821789 80822110 -67961362 - AluSq SINE Alu 0 320 1 2371 108 0 0 chr11 80822110 80822416 -67961056 - AluSx SINE Alu -6 306 1 972 297 100 38 chr11 80822416 80822505 -67960967 + L2 LINE L2 2693 2855 -459 394 332 27 90 chr11 80822572 80822828 -67960644 + L2 LINE L2 2962 3201 -71 1234 172 13 9 chr11 80823025 80823252 -67960220 + AluJo SINE Alu 82 309 -3 341 247 73 60 chr11 80823340 80823490 -67959982 + L1ME3A LINE L1 5921 6072 -98 191 238 0 24 chr11 80824706 80824748 -67958724 + L2 LINE L2 3255 3295 -18 4449 182 95 40 chr11 80824782 80826632 -67956840 - L1MD1 LINE L1 0 6242 4220 2160 118 0 13 chr11 80826632 80826946 -67956526 - AluSg SINE Alu 0 310 1 4449 182 95 40 chr11 80826946 80827199 -67956273 - L1MD1 LINE L1 -2022 4220 3982 884 187 39 87 chr11 80827205 80827435 -67956037 - MLT1B LTR MaLR 0 390 172 * 1257 159 9 9 chr11 80827402 80827616 -67955856 - MLT1B LTR MaLR -161 229 16 2725 228 40 57 chr11 80827679 80828153 -67955319 - L1MDa LINE L1 -2169 4371 3890 1900 121 31 66 chr11 80828153 80828534 -67954938 + L1MB3 LINE L1 5812 6179 -4 2725 228 40 57 chr11 80828534 80829480 -67953992 - L1MDa LINE L1 -2650 3890 3014 601 155 31 0 chr11 80829480 80829577 -67953895 - MER77 LTR ERV1 0 605 506 1184 183 8 84 chr11 80829577 80829828 -67953644 - MER77 LTR ERV1 -373 232 1 4506 216 50 59 chr11 80829828 80830421 -67953051 - L1MDa LINE L1 -3522 3018 2421 2082 59 8 0 chr11 80830421 80830675 -67952797 - AluY SINE Alu -5 306 51 4506 216 50 59 chr11 80830675 80830833 -67952639 - L1MDa LINE L1 -4119 2421 2263 2230 183 33 22 chr11 80830833 80831293 -67952179 - MLT1C LTR MaLR 0 467 3 4506 216 50 59 chr11 80831293 80831330 -67952142 - L1MDa LINE L1 -4277 2263 2227 355 38 38 0 chr11 80831330 80831383 -67952089 + (TA)n Simple_repeat Simple_repeat 2 56 0 2403 81 3 0 chr11 80831383 80831679 -67951793 - AluSq SINE Alu -16 297 1 4506 216 50 59 chr11 80831679 80832231 -67951241 - L1MDa LINE L1 -4312 2228 1713 1830 127 10 40 chr11 80832231 80832530 -67950942 + AluJo SINE Alu 14 303 -9 4506 216 50 59 chr11 80832530 80832758 -67950714 - L1MDa LINE L1 -4827 1713 1485 1769 245 109 14 chr11 80832757 80833251 -67950221 - L1MDa LINE L1 -5586 954 414 * 1261 107 112 0 chr11 80833253 80833459 -67950013 + L1MA7 LINE L1 6061 6289 -2 1161 178 9 19 chr11 80833471 80833684 -67949788 - L1MDa LINE L1 -6329 211 1 185 269 90 51 chr11 80833919 80833997 -67949475 + L2 LINE L2 3137 3217 -55 443 179 11 11 chr11 80834062 80834157 -67949315 + L1ME1 LINE L1 37 131 -5988 1746 176 0 14 chr11 80834164 80834454 -67949018 + AluJo SINE Alu 1 286 -26 2314 143 71 2 chr11 80834474 80834867 -67948605 - MSTA LTR MaLR 0 428 9 1572 200 3 7 chr11 80834918 80835213 -67948259 + AluJo SINE Alu 1 294 -18 537 281 27 14 chr11 80835372 80835518 -67947954 + L1ME1 LINE L1 329 476 -5643 955 185 52 12 chr11 80835532 80835554 -67947918 + AluJo SINE Alu 102 122 -190 315 0 0 0 chr11 80835554 80835589 -67947883 + (TAA)n Simple_repeat Simple_repeat 2 36 0 955 185 52 12 chr11 80835589 80835739 -67947733 + AluJo SINE Alu 122 281 -31 1930 234 74 55 chr11 80835746 80836548 -67946924 + HAL1 LINE L1 1072 1888 -619 22 35 0 0 chr11 80837102 80837131 -67946341 + AT_rich Low_complexity Low_complexity 1 29 0 390 212 122 90 chr11 80837201 80837456 -67946016 + L1ME1 LINE L1 3859 4121 -2008 3269 192 92 32 chr11 80837460 80837528 -67945944 + L1ME1 LINE L1 4186 4248 -1901 2406 92 0 0 chr11 80837528 80837832 -67945640 + AluSc SINE Alu 1 304 -5 3269 192 92 32 chr11 80837832 80839406 -67944066 + L1ME1 LINE L1 4248 5926 -223 462 172 126 40 chr11 80839394 80839545 -67943927 + L1MA10 LINE L1 6168 6331 -3 * 460 264 132 32 chr11 80839671 80839891 -67943581 + L2 LINE L2 3072 3313 0 1070 199 0 6 chr11 80840156 80840332 -67943140 + FAM SINE Alu 1 175 0 1655 194 45 65 chr11 80841064 80841216 -67942256 + L1MC5 LINE L1 7330 7483 -478 2422 88 3 0 chr11 80841216 80841521 -67941951 + AluSx SINE Alu 1 306 -6 1655 194 45 65 chr11 80841521 80841895 -67941577 + L1MC5 LINE L1 7483 7846 -115 2014 198 102 0 chr11 80842264 80842820 -67940652 + L1 LINE L1 2838 3450 -2696 1202 212 22 4 chr11 80842838 80843112 -67940360 + L1 LINE L1 4465 4743 -1403 8383 102 38 26 chr11 80843137 80843332 -67940140 + Tigger1 DNA MER2_type 34 225 -2193 1827 152 30 3 chr11 80843332 80843629 -67939843 - AluSx SINE Alu -7 305 1 8383 102 38 26 chr11 80843629 80844568 -67938904 + Tigger1 DNA MER2_type 225 1186 -1232 2431 68 0 0 chr11 80844568 80844860 -67938612 + AluSg SINE Alu 1 292 -18 8383 102 38 26 chr11 80844860 80844976 -67938496 + Tigger1 DNA MER2_type 1186 1299 -1119 431 289 186 10 chr11 80845259 80845463 -67938009 + MIR SINE MIR 12 251 -11 335 66 0 0 chr11 80848227 80848319 -67935153 + AluSc SINE Alu 252 336 0 249 33 0 0 chr11 80848985 80849015 -67934457 + (A)n Simple_repeat Simple_repeat 1 30 0 573 215 81 81 chr11 80850010 80850080 -67933392 + MER58C DNA MER1_type 1 70 -2350 180 0 0 0 chr11 80850080 80850100 -67933372 + (TTTTA)n Simple_repeat Simple_repeat 4 23 0 573 215 81 81 chr11 80850100 80850121 -67933351 + MER58C DNA MER1_type 70 90 -2330 1812 110 48 31 chr11 80850121 80850413 -67933059 - AluSx SINE Alu -15 297 1 573 215 81 81 chr11 80850413 80850506 -67932966 + MER58C DNA MER1_type 89 186 -29 23 0 0 0 chr11 80851471 80851494 -67931978 + AT_rich Low_complexity Low_complexity 1 23 0 506 290 113 65 chr11 80851566 80851752 -67931720 + MER91A DNA MER1_type 1 195 -1 23 54 0 0 chr11 80851866 80851903 -67931569 + AT_rich Low_complexity Low_complexity 1 37 0 349 300 103 77 chr11 80852640 80852940 -67930532 - L2 LINE L2 -18 3254 2947 1708 156 35 10 chr11 80853023 80853312 -67930160 + AluJo SINE Alu 3 298 -14 363 275 84 56 chr11 80853445 80853602 -67929870 - L2 LINE L2 -923 2391 2221 2296 86 10 17 chr11 80853602 80853904 -67929568 + AluSg SINE Alu 3 302 -8 363 275 84 56 chr11 80853904 80854033 -67929439 - L2 LINE L2 -1093 2221 2097 204 314 104 28 chr11 80854305 80854412 -67929060 + MIR SINE MIR 35 147 -61 254 29 29 0 chr11 80856179 80856214 -67927258 + (GA)n Simple_repeat Simple_repeat 1 36 0 264 178 200 11 chr11 80856341 80856431 -67927041 + MER107 DNA MER1_type 69 175 -22 387 0 0 0 chr11 80856490 80856533 -67926939 + (TTTA)n Simple_repeat Simple_repeat 1 43 0 851 208 0 0 chr11 80856534 80856683 -67926789 - AluJb SINE Alu -44 268 120 2592 169 78 51 chr11 80856811 80857233 -67926239 + HERVL74 LTR ERVL 1041 1487 -4198 1829 164 0 0 chr11 80857233 80857513 -67925959 + AluJb SINE Alu 5 284 -28 2592 169 78 51 chr11 80857513 80857734 -67925738 + HERVL74 LTR ERVL 1487 1701 -3984 215 202 11 0 chr11 80857734 80857823 -67925649 + (TA)n Simple_repeat Simple_repeat 1 90 0 1272 207 94 16 chr11 80857860 80858169 -67925303 + HERVL74 LTR ERVL 1708 2040 -3645 804 102 0 0 chr11 80858169 80858267 -67925205 - AluSq SINE Alu -103 210 113 1722 115 0 0 chr11 80858938 80859173 -67924299 + AluSq SINE Alu 1 235 -78 201 245 20 0 chr11 80859175 80859224 -67924248 - L2 LINE L2 -291 2981 2932 373 270 95 29 chr11 80859412 80859549 -67923923 - MIR SINE MIR -22 240 95 221 175 0 0 chr11 80859640 80859680 -67923792 - L2 LINE L2 -233 3039 3000 205 306 276 0 chr11 80860092 80860190 -67923282 - MIR SINE MIR -116 146 22 220 333 46 0 chr11 80860207 80860315 -67923157 - L2 LINE L2 -1 3271 3159 202 206 0 0 chr11 80860466 80860500 -67922972 - L2 LINE L2 -20 3252 3219 444 233 273 28 chr11 80860634 80860810 -67922662 - MIR SINE MIR -2 260 42 344 355 141 21 chr11 80860847 80861137 -67922335 - L2 LINE L2 -49 3223 2899 268 307 200 24 chr11 80861174 80861594 -67921878 - L2 LINE L2 -558 2756 2263 1761 183 6 6 chr11 80861690 80862002 -67921470 + AluJb SINE Alu 1 312 0 273 241 0 0 chr11 80862307 80862361 -67921111 - MIR SINE MIR -114 148 95 305 181 42 0 chr11 80863852 80863924 -67919548 + MER81 DNA DNA 1 75 -39 245 215 54 92 chr11 80866147 80866277 -67917195 - MIR SINE MIR -73 135 11 694 238 60 24 chr11 80866400 80866646 -67916826 - L1ME3A LINE L1 -2 6168 5916 4931 120 18 42 chr11 80866646 80866797 -67916675 - L1MA8 LINE L1 -3 6288 6135 1885 121 43 0 chr11 80866797 80867079 -67916393 + AluSx SINE Alu 1 294 -18 4931 120 18 42 chr11 80867079 80867768 -67915704 - L1MA8 LINE L1 -156 6135 5468 1987 129 3 13 chr11 80867792 80868094 -67915378 + AluSx SINE Alu 1 299 -13 5349 133 20 32 chr11 80868147 80868237 -67915235 - L1MA8 LINE L1 -745 5401 5311 2064 88 54 3 chr11 80868237 80868531 -67914941 - AluSq SINE Alu -4 309 1 5349 133 20 32 chr11 80868531 80869671 -67913801 - L1MA8 LINE L1 -835 5311 4271 953 149 16 5 chr11 80869671 80869865 -67913607 - L1MA8 LINE L1 -2200 3946 3751 207 0 0 0 chr11 80869866 80869889 -67913583 + (TTA)n Simple_repeat Simple_repeat 2 24 0 307 205 7 26 chr11 80869903 80869986 -67913486 - AluSp SINE Alu -113 190 122 502 133 0 0 chr11 80869994 80870084 -67913388 - L1MA8 LINE L1 -2414 3732 3643 1310 261 107 22 chr11 80870085 80870500 -67912972 - L1ME3A LINE L1 -229 5941 5468 354 23 0 0 chr11 80870500 80870543 -67912929 + (TG)n Simple_repeat Simple_repeat 2 44 0 1310 261 107 22 chr11 80870543 80870670 -67912802 - L1ME3A LINE L1 -702 5468 5353 960 223 113 14 chr11 80870664 80871027 -67912445 - L1ME3A LINE L1 -1086 5060 4662 * 188 128 77 0 chr11 80871145 80871184 -67912288 - MIR SINE MIR -86 122 81 270 300 44 2 chr11 80871528 80871622 -67911850 - MIR SINE MIR -83 125 33 269 237 26 13 chr11 80871966 80872042 -67911430 + L2 LINE L2 2916 2992 -280 213 297 103 45 chr11 80873492 80873647 -67909825 + MIR3 SINE MIR 38 201 -7 212 182 0 45 chr11 80873835 80873879 -67909593 - MIR SINE MIR -91 117 80 313 281 83 0 chr11 80874175 80874271 -67909201 + MIR SINE MIR 38 141 -67 300 304 58 16 chr11 80874466 80874610 -67908862 - MIR3 SINE MIR -73 135 3 323 307 86 7 chr11 80875377 80875517 -67907955 + MIR SINE MIR 21 171 -91 248 334 42 10 chr11 80875921 80876086 -67907386 + MIR SINE MIR 29 197 -58 385 261 76 0 chr11 80876236 80876355 -67907117 + MIR SINE MIR 134 261 -1 215 337 33 0 chr11 80877072 80877164 -67906308 - MIR SINE MIR -80 128 34 184 261 98 11 chr11 80877561 80877653 -67905819 + MIR SINE MIR 34 133 -75 420 265 74 25 chr11 80878270 80878432 -67905040 + MIR SINE MIR 32 201 -61 1460 106 0 5 chr11 80880392 80880590 -67902882 + AluSg/x SINE Alu 79 275 -35 209 30 61 0 chr11 80880596 80880629 -67902843 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 739 214 208 0 chr11 80880644 80880836 -67902636 + MIR SINE MIR 28 259 -3 297 269 56 41 chr11 80881195 80881358 -67902114 + MIR SINE MIR 20 184 -56 357 260 65 24 chr11 80882137 80882260 -67901212 + MIR SINE MIR 63 190 -72 278 338 114 67 chr11 80882584 80882657 -67900815 - MIR SINE MIR -23 239 171 1867 158 13 0 chr11 80882657 80882961 -67900511 + AluJo SINE Alu 1 308 -4 278 338 114 67 chr11 80882961 80883097 -67900375 - MIR SINE MIR -91 171 20 1972 110 42 29 chr11 80883414 80883723 -67899749 + AluSq SINE Alu 1 313 0 337 326 46 0 chr11 80883726 80883897 -67899575 + MIR SINE MIR 51 230 -32 220 313 140 27 chr11 80884858 80885008 -67898464 + MIR3 SINE MIR 21 187 -21 274 330 9 43 chr11 80885426 80885541 -67897931 + MIR SINE MIR 117 227 -35 194 295 42 42 chr11 80887010 80887105 -67896367 + MIR SINE MIR 25 119 -143 181 354 38 0 chr11 80887242 80887321 -67896151 + L2 LINE L2 3096 3177 -95 2434 67 0 0 chr11 80887662 80887961 -67895511 + AluY SINE Alu 1 299 -12 197 357 171 16 chr11 80888403 80888532 -67894940 - MIR SINE MIR -91 171 23 244 290 16 0 chr11 80888718 80888780 -67894692 + L2 LINE L2 3200 3262 -10 229 300 0 0 chr11 80888979 80889039 -67894433 + A-rich Low_complexity Low_complexity 4 63 0 819 221 32 0 chr11 80889195 80889385 -67894087 - L1MB4 LINE L1 -2 6178 5983 293 377 35 0 chr11 80889486 80889600 -67893872 + MIR SINE MIR 30 147 -61 526 162 126 0 chr11 80890189 80890300 -67893172 + MER63 DNA MER1_type 3 753 -83 1280 92 6 0 chr11 80890327 80890500 -67892972 + AluSp SINE Alu 135 308 -5 458 258 31 44 chr11 80891775 80891934 -67891538 + MIR3 SINE MIR 22 178 -30 206 261 54 45 chr11 80892174 80892285 -67891187 - L2 LINE L2 -215 3057 2946 1865 168 7 0 chr11 80892369 80892666 -67890806 + AluJo SINE Alu 1 299 -13 337 255 57 56 chr11 80893238 80893418 -67890054 - MIR SINE MIR 0 262 84 262 324 34 12 chr11 80893810 80893944 -67889528 + MIR3 SINE MIR 51 182 -54 245 356 0 34 chr11 80893957 80894075 -67889397 - MIR3 SINE MIR -52 156 43 273 295 70 65 chr11 80894196 80894441 -67889031 - MIR SINE MIR -14 248 4 1752 192 0 0 chr11 80895459 80895761 -67887711 - AluJo SINE Alu -10 302 1 1251 165 22 38 chr11 80895764 80896031 -67887441 - L1MB8 LINE L1 -3 6175 5913 303 350 78 28 chr11 80896515 80896732 -67886740 - MIR SINE MIR -24 238 11 412 293 106 25 chr11 80896918 80897116 -67886356 + MIR SINE MIR 34 247 -15 276 271 62 68 chr11 80897643 80897820 -67885652 - L2 LINE L2 -191 3081 2906 186 143 0 0 chr11 80897945 80897980 -67885492 + (CCCCCA)n Simple_repeat Simple_repeat 2 36 0 353 331 68 0 chr11 80898732 80898880 -67884592 - MIR3 SINE MIR -1 207 50 445 211 19 0 chr11 80899346 80899450 -67884022 + MIR SINE MIR 24 129 -79 309 284 0 14 chr11 80900865 80900939 -67882533 + MIR SINE MIR 81 153 -109 240 35 0 0 chr11 80901026 80901055 -67882417 + (TA)n Simple_repeat Simple_repeat 1 29 0 261 380 51 0 chr11 80901714 80901851 -67881621 - L2 LINE L2 0 3313 3170 182 266 25 63 chr11 80902185 80902264 -67881208 + MIR SINE MIR 186 261 -1 337 294 35 42 chr11 80904244 80904387 -67879085 + MIR SINE MIR 65 206 -56 645 304 82 73 chr11 80904923 80905364 -67878108 - L2 LINE L2 -21 3251 2807 25 0 0 0 chr11 80905373 80905398 -67878074 + GC_rich Low_complexity Low_complexity 1 25 0 339 305 46 20 chr11 80905619 80905770 -67877702 + MIR3 SINE MIR 33 187 -21 228 235 98 39 chr11 80906312 80906414 -67877058 - L2 LINE L2 -309 2963 2856 186 143 0 0 chr11 80906818 80906853 -67876619 + (TG)n Simple_repeat Simple_repeat 1 35 0 491 298 60 12 chr11 80907303 80907471 -67876001 + MIR SINE MIR 49 224 -38 180 125 0 0 chr11 80907880 80907912 -67875560 + (TATG)n Simple_repeat Simple_repeat 1 32 0 2029 104 11 0 chr11 80907912 80908192 -67875280 - AluSc SINE Alu -24 285 3 283 296 74 9 chr11 80908194 80908302 -67875170 - MIR SINE MIR -99 163 49 181 269 56 46 chr11 80908428 80908536 -67874936 - L2 LINE L2 -94 3178 3070 1527 200 47 64 chr11 80908846 80909344 -67874128 - L1M4 LINE L1 -3723 2659 2154 2059 129 0 3 chr11 80909344 80909638 -67873834 - AluSq SINE Alu -20 293 1 1527 200 47 64 chr11 80909638 80909867 -67873605 - L1M4 LINE L1 -4228 2154 1845 981 229 0 0 chr11 80909867 80910037 -67873435 - FAM SINE Alu -4 171 2 1527 200 47 64 chr11 80910037 80910133 -67873339 - L1M4 LINE L1 -4537 1845 1749 247 308 123 0 chr11 80910403 80910549 -67872923 + MIR3 SINE MIR 42 205 -3 461 331 44 82 chr11 80910953 80911294 -67872178 + L2 LINE L2 2945 3272 0 520 204 15 23 chr11 80911373 80911505 -67871967 - MIR SINE MIR -60 202 72 189 310 0 17 chr11 80911542 80911600 -67871872 - MIR SINE MIR -196 66 10 1381 115 128 17 chr11 80912541 80912775 -67870697 + AluSq SINE Alu 40 299 -14 254 293 104 25 chr11 80912781 80912932 -67870540 - MIR3 SINE MIR -63 145 15 2387 227 90 56 chr11 80913269 80914318 -67869154 + L1MC5 LINE L1 6808 7891 -70 283 265 72 0 chr11 80914618 80914701 -67868771 + L2 LINE L2 3146 3234 -38 202 188 297 16 chr11 80914850 80914914 -67868558 + MIR SINE MIR 111 192 -70 196 264 57 0 chr11 80915011 80915064 -67868408 - L3 LINE CR1 -11 1566 1511 369 289 126 31 chr11 80916215 80916374 -67867098 - MIR SINE MIR -28 234 61 193 333 67 22 chr11 80916895 80917030 -67866442 + MIR3 SINE MIR 5 145 -63 211 316 143 15 chr11 80917153 80917286 -67866186 - MIR3 SINE MIR -11 197 48 224 316 0 13 chr11 80918328 80918404 -67865068 + MIR3 SINE MIR 115 189 -19 330 323 84 6 chr11 80920531 80920698 -67862774 + L2 LINE L2 2432 2611 -703 812 197 67 17 chr11 80920701 80920879 -67862593 - MER5A DNA MER1_type -2 187 1 308 331 145 0 chr11 80921212 80921378 -67862094 + L3 LINE CR1 900 1089 -488 274 329 106 0 chr11 80921552 80921713 -67861759 + L2 LINE L2 3123 3300 -13 393 102 0 0 chr11 80921713 80921772 -67861700 + (TGAA)n Simple_repeat Simple_repeat 1 59 0 200 302 12 12 chr11 80922455 80922541 -67860931 + GA-rich Low_complexity Low_complexity 1 86 0 2323 101 0 0 chr11 80922748 80923055 -67860417 + AluSq SINE Alu 1 307 -6 648 36 0 0 chr11 80923093 80923176 -67860296 + (TCTCCC)n Simple_repeat Simple_repeat 1 83 0 4724 66 25 6 chr11 80923176 80923811 -67859661 + SVA Other Other 57 703 -683 195 292 83 14 chr11 80924281 80924353 -67859119 + MIR SINE MIR 116 192 -70 500 223 18 18 chr11 80924560 80924672 -67858800 - MIR SINE MIR -55 153 42 363 253 25 0 chr11 80925211 80925316 -67858156 + MIR SINE MIR 57 164 -62 268 220 209 0 chr11 80925613 80925704 -67857768 - L2 LINE L2 -12 3260 3151 438 228 0 20 chr11 80925817 80925918 -67857554 + MIR SINE MIR 20 118 -90 227 244 37 0 chr11 80926003 80926085 -67857387 - L2 LINE L2 -46 3226 3142 180 311 54 40 chr11 80926163 80926237 -67857235 + MIR SINE MIR 174 248 -14 1251 159 99 14 chr11 80926385 80926668 -67856804 + MER7A DNA MER2_type 42 346 0 334 248 220 0 chr11 80926725 80926834 -67856638 - MIR3 SINE MIR -46 162 30 676 297 216 15 chr11 80926996 80927466 -67856006 + L2 LINE L2 2764 3305 -8 187 225 0 0 chr11 80927899 80927939 -67855533 + MIR SINE MIR 109 148 -114 575 269 64 0 chr11 80928581 80928752 -67854720 + MIR SINE MIR 31 212 -50 407 248 51 8 chr11 80929469 80929586 -67853886 - MIR3 SINE MIR -75 133 12 210 339 85 37 chr11 80930036 80930225 -67853247 + L2 LINE L2 3074 3271 -1 250 314 109 26 chr11 80930538 80930694 -67852778 + MIR SINE MIR 79 247 -15 352 339 0 24 chr11 80930761 80930888 -67852584 - MIR SINE MIR -75 187 64 303 299 67 0 chr11 80931241 80931375 -67852097 + MIR3 SINE MIR 51 193 -15 475 304 40 40 chr11 80932554 80932807 -67850665 + L2 LINE L2 2848 3100 -213 213 39 0 0 chr11 80932850 80932876 -67850596 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 1207 123 0 0 chr11 80933152 80933323 -67850149 - AluSq SINE Alu -17 296 126 977 100 0 56 chr11 80933323 80933456 -67850016 + AluSp/q SINE Alu 163 287 -26 540 165 10 0 chr11 80933456 80933553 -67849919 + L1MA8 LINE L1 6188 6285 -6 977 100 0 56 chr11 80933553 80933579 -67849893 + AluSp/q SINE Alu 287 313 0 336 294 134 15 chr11 80933585 80933847 -67849625 + L1ME1 LINE L1 4540 4832 -1314 338 344 60 29 chr11 80933883 80934107 -67849365 + L1ME1 LINE L1 4899 5115 -1051 1831 163 7 0 chr11 80934107 80934396 -67849076 - AluJb SINE Alu -21 291 1 338 344 60 29 chr11 80934396 80935111 -67848361 + L1ME1 LINE L1 5115 5895 -271 767 117 8 0 chr11 80935661 80935789 -67847683 + MER41B LTR ERV1 1 129 -506 2616 122 16 7 chr11 80935794 80936229 -67847243 - MER83 LTR ERV1 -9 439 1 1894 133 6 12 chr11 80936229 80936575 -67846897 + MER41B LTR ERV1 125 468 -167 1947 115 24 17 chr11 80936583 80936878 -67846594 + AluSx SINE Alu 5 301 -11 586 294 28 4 chr11 80936899 80937151 -67846321 - L1 LINE L1 -1814 4332 4075 939 186 6 0 chr11 80937160 80937327 -67846145 - AluJb SINE Alu 0 312 145 3230 159 14 14 chr11 80937432 80938078 -67845394 + L1MB3 LINE L1 5494 6139 -44 1763 136 3 23 chr11 80938081 80938389 -67845083 + AluSq SINE Alu 1 302 -11 817 165 0 18 chr11 80938396 80938560 -67844912 + MER41B LTR ERV1 475 635 0 2137 135 0 0 chr11 80939281 80939593 -67843879 - AluSq SINE Alu -1 312 1 3405 155 23 90 chr11 80940657 80941127 -67842345 - LTR8 LTR ERV1 0 691 288 1934 162 0 0 chr11 80941127 80941430 -67842042 - AluSx SINE Alu -9 303 1 3405 155 23 90 chr11 80941430 80941700 -67841772 - LTR8 LTR ERV1 -403 288 1 754 141 0 0 chr11 80942092 80942220 -67841252 + L1MB5 LINE L1 5564 5691 -493 1238 167 0 24 chr11 80942222 80942432 -67841040 + AluJb SINE Alu 86 290 -22 1688 132 37 60 chr11 80942433 80942636 -67840836 + L1MB5 LINE L1 5684 5890 -284 1543 167 4 0 chr11 80942636 80942882 -67840590 + AluJo SINE Alu 36 282 -30 186 43 0 0 chr11 80942887 80942910 -67840562 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 1688 132 37 60 chr11 80942910 80943080 -67840392 + L1MB5 LINE L1 5894 6054 -120 641 108 9 0 chr11 80943249 80943360 -67840112 + L1MB7 LINE L1 6056 6167 -17 1599 253 30 31 chr11 80943368 80944125 -67839347 - L1MC4a LINE L1 -1692 6116 5306 286 95 0 0 chr11 80944129 80944171 -67839301 + MLT1A2 LTR MaLR 333 374 0 454 310 47 32 chr11 80944173 80944233 -67839239 - L1MC4a LINE L1 -1117 5029 4971 2474 143 53 7 chr11 80944233 80944646 -67838826 + MSTB1 LTR MaLR 1 432 0 454 310 47 32 chr11 80944646 80944992 -67838480 - L1MC4a LINE L1 -1175 4971 4617 803 185 0 20 chr11 80945117 80945263 -67838209 - FLAM_C SINE Alu 0 143 1 434 261 71 44 chr11 80945263 80945489 -67837983 - L1MC4a LINE L1 -2059 4087 3856 550 170 90 4 chr11 80945517 80945656 -67837816 + MLT1C LTR MaLR 353 463 -4 939 84 0 30 chr11 80945693 80945824 -67837648 + AluSp/q SINE Alu 168 294 -19 269 295 36 36 chr11 80946475 80946587 -67836885 + L3 LINE CR1 1409 1520 -57 369 268 181 0 chr11 80946612 80946739 -67836733 + MIR SINE MIR 34 183 -79 274 216 119 82 chr11 80946932 80947066 -67836406 + MIR3 SINE MIR 60 198 -10 199 178 111 0 chr11 80947105 80947150 -67836322 + MIR3 SINE MIR 113 162 -46 573 312 30 25 chr11 80947154 80947353 -67836119 - MIR SINE MIR 0 262 63 369 211 123 26 chr11 80947611 80947725 -67835747 - MIR SINE MIR -63 145 21 3111 174 107 8 chr11 80948247 80948909 -67834563 + LTR39 LTR ERV1 56 783 0 210 216 0 20 chr11 80949131 80949182 -67834290 - MIR SINE MIR -96 166 117 189 0 0 0 chr11 80949496 80949517 -67833955 + (T)n Simple_repeat Simple_repeat 1 21 0 3015 61 0 3 chr11 80949520 80949895 -67833577 - L1PA6 LINE L1 -2 6152 5779 673 158 0 0 chr11 80950131 80950232 -67833240 - AluJ/FLAM SINE Alu -211 101 1 289 288 56 23 chr11 80950317 80950495 -67832977 - MIR SINE MIR -62 146 3 253 367 73 0 chr11 80950885 80951035 -67832437 - MIR3 SINE MIR -1 207 47 250 252 69 8 chr11 80951247 80951378 -67832094 - MER112 DNA MER1_type -6 254 116 2171 117 0 9 chr11 80951445 80951761 -67831711 + AluSq SINE Alu 1 313 0 337 283 50 30 chr11 80951777 80951876 -67831596 + L1M4 LINE L1 4285 4385 -1761 405 244 44 44 chr11 80951876 80952036 -67831436 + L1MC4 LINE L1 7860 8019 -23 222 37 0 0 chr11 80952041 80952068 -67831404 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 192 222 127 0 chr11 80952360 80952423 -67831049 + MIR SINE MIR 58 128 -80 1653 120 64 109 chr11 80952423 80952816 -67830656 + THE1C LTR MaLR 1 375 0 3662 110 35 2 chr11 80953114 80953624 -67829848 - MER1A DNA MER1_type 0 527 1 1108 191 163 123 chr11 80953635 80954121 -67829351 - MLT1D LTR MaLR 0 505 1 439 323 8 16 chr11 80954475 80954602 -67828870 - MER5B DNA MER1_type -51 127 2 2136 90 3 10 chr11 80955297 80955596 -67827876 + AluSg SINE Alu 1 297 -13 363 227 55 47 chr11 80956077 80956205 -67827267 + MLT1J2 LTR MaLR 15 143 -307 986 200 75 0 chr11 80956334 80956534 -67826938 - MER20 DNA MER1_type -4 215 1 1088 198 91 4 chr11 80956752 80957004 -67826468 - MLT1A1 LTR MaLR 0 365 92 1698 62 0 5 chr11 80957047 80957258 -67826214 + AluY SINE Alu 1 210 -101 244 267 35 23 chr11 80957358 80957444 -67826028 + MIR SINE MIR 117 203 -59 1872 203 128 18 chr11 80958809 80959262 -67824210 - MLT1D LTR MaLR -2 503 1 1921 145 57 3 chr11 80959466 80959700 -67823772 - L1M3 LINE L1 -455 5728 5463 258 32 0 0 chr11 80959700 80959731 -67823741 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 1921 145 57 3 chr11 80959731 80959882 -67823590 - L1M3 LINE L1 -720 5463 5322 341 184 26 0 chr11 80959883 80959959 -67823513 - AluJ/FRAM SINE Alu -3 299 222 1331 188 14 11 chr11 80960015 80960297 -67823175 - L1M4c LINE L1 -4652 1732 1450 183 313 0 0 chr11 80960453 80960520 -67822952 + L2 LINE L2 2920 2986 -327 261 323 75 0 chr11 80960608 80960701 -67822771 - MIR SINE MIR -37 225 126 301 225 50 12 chr11 80960823 80960903 -67822569 - Charlie1 DNA MER1_type -2678 83 1 182 217 179 57 chr11 80963088 80963194 -67820278 + MIR3 SINE MIR 12 130 -78 385 284 64 59 chr11 80963744 80963948 -67819524 + MIR SINE MIR 21 225 -37 200 200 0 0 chr11 80964017 80964057 -67819415 + (TAGA)n Simple_repeat Simple_repeat 1 40 0 271 247 25 37 chr11 80964490 80964571 -67818901 - L2 LINE L2 -1 3271 3192 289 284 10 20 chr11 80964644 80964746 -67818726 - L2 LINE L2 -227 3045 2945 560 251 65 24 chr11 80964797 80965088 -67818384 - L2 LINE L2 -463 2851 2549 1024 173 17 0 chr11 80965787 80965966 -67817506 + AluSg/x SINE Alu 115 296 -14 287 276 95 0 chr11 80965975 80966080 -67817392 - MIR SINE MIR -30 232 118 279 271 69 56 chr11 80967233 80967377 -67816095 - L3 LINE CR1 -360 1217 1072 197 237 271 51 chr11 80967386 80967504 -67815968 - MIR SINE MIR -9 253 110 276 333 70 19 chr11 80968059 80968215 -67815257 - L3 LINE CR1 -513 1064 901 196 191 119 0 chr11 80970650 80970692 -67812780 - L2 LINE L2 -1 3312 3266 227 281 214 0 chr11 80971021 80971110 -67812362 - L2 LINE L2 -40 3273 3166 294 254 28 0 chr11 80971569 80971640 -67811832 + MIR SINE MIR 81 153 -55 460 275 53 41 chr11 80972495 80972666 -67810806 - L2 LINE L2 -167 3105 2933 383 347 47 0 chr11 80973684 80973834 -67809638 + MIR3 SINE MIR 42 198 -10 240 248 95 67 chr11 80974165 80974270 -67809202 + MIR SINE MIR 67 174 -88 289 310 0 11 chr11 80974455 80974542 -67808930 - MIR3 SINE MIR -13 195 110 1162 179 53 25 chr11 80974926 80975176 -67808296 - L1MB4 LINE L1 -17 6163 5903 1636 168 90 12 chr11 80975176 80975497 -67807975 - MER7A DNA MER2_type -2 344 1 1162 179 53 25 chr11 80975497 80975531 -67807941 - L1MB4 LINE L1 -277 5903 5871 257 41 4 0 chr11 80975642 80975685 -67807787 - L1MB4 LINE L1 -480 5691 5648 193 252 0 163 chr11 80975695 80975830 -67807642 - MIR SINE MIR -63 145 33 32 0 0 0 chr11 80976152 80976184 -67807288 + AT_rich Low_complexity Low_complexity 1 32 0 255 280 13 13 chr11 80976436 80976511 -67806961 - L2 LINE L2 -5 3308 3234 336 248 143 0 chr11 80976531 80976636 -67806836 - MIR3 SINE MIR 0 208 89 238 320 72 13 chr11 80976775 80976909 -67806563 - MIR SINE MIR -55 153 22 386 257 43 71 chr11 80977226 80977366 -67806106 + MIR SINE MIR 47 182 -80 363 314 16 8 chr11 80977628 80977749 -67805723 + MIR3 SINE MIR 70 191 -17 187 282 45 100 chr11 80978055 80978165 -67805307 - MIR3 SINE MIR -24 184 81 340 259 28 9 chr11 80978948 80979056 -67804416 - MIR SINE MIR -64 144 35 320 247 56 49 chr11 80979085 80979278 -67804194 - MIR SINE MIR -36 226 35 605 263 61 47 chr11 80980134 80980266 -67803206 - MIR SINE MIR -11 251 113 1770 168 0 23 chr11 80980266 80980575 -67802897 + AluJo SINE Alu 1 302 -10 605 263 61 47 chr11 80980575 80980655 -67802817 - MIR SINE MIR -149 113 36 34 0 0 0 chr11 80980715 80980749 -67802723 + AT_rich Low_complexity Low_complexity 1 34 0 1097 265 72 75 chr11 80981410 80981547 -67801925 - L2 LINE L2 -13 3300 3164 1769 189 17 0 chr11 80981547 80981849 -67801623 + AluJb SINE Alu 1 307 -5 1097 265 72 75 chr11 80981849 80982323 -67801149 - L2 LINE L2 -149 3164 2670 716 275 68 4 chr11 80982468 80982719 -67800753 - L2 LINE L2 -639 2675 2409 265 304 38 0 chr11 80982791 80982870 -67800602 - L2 LINE L2 -55 3217 3136 251 114 23 0 chr11 80982986 80983030 -67800442 + (TG)n Simple_repeat Simple_repeat 2 46 0 445 331 69 12 chr11 80983925 80984085 -67799387 - MIR SINE MIR -59 203 35 205 102 204 0 chr11 80984265 80984314 -67799158 - L2 LINE L2 -185 3087 3029 410 312 39 19 chr11 80984815 80984969 -67798503 + MIR SINE MIR 20 176 -86 185 350 40 10 chr11 80985054 80985154 -67798318 + L2 LINE L2 2992 3094 -178 320 368 29 12 chr11 80985157 80985328 -67798144 - MIR SINE MIR -10 252 79 258 329 109 5 chr11 80985694 80985904 -67797568 + L2 LINE L2 2578 2809 -505 402 269 119 37 chr11 80985965 80986099 -67797373 - MER91B DNA MER1_type -38 152 8 182 321 161 36 chr11 80986106 80986299 -67797173 + L2 LINE L2 2875 3091 -181 273 298 99 15 chr11 80986908 80987039 -67796433 - MIR3 SINE MIR -16 192 51 199 108 27 0 chr11 80987519 80987556 -67795916 + MIR SINE MIR 108 145 -117 522 294 112 10 chr11 80988101 80988298 -67795174 - MIR SINE MIR -21 241 25 186 43 0 0 chr11 80988428 80988451 -67795021 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 467 310 40 55 chr11 80988456 80988656 -67794816 + L2 LINE L2 3076 3272 0 301 366 96 24 chr11 80988700 80988951 -67794521 - L2 LINE L2 -467 2847 2579 218 187 13 6 chr11 80990234 80990309 -67793163 + MIR3 SINE MIR 38 156 -52 21 36 0 0 chr11 80990326 80990354 -67793118 + AT_rich Low_complexity Low_complexity 1 28 0 187 127 16 175 chr11 80990359 80990422 -67793050 - L2 LINE L2 0 3313 3261 * 525 209 20 50 chr11 80990412 80990579 -67792893 - MIR SINE MIR -65 143 17 1261 195 104 17 chr11 80992355 80992653 -67790819 + MER33 DNA MER1_type 1 324 0 186 151 75 19 chr11 80992708 80992761 -67790711 - L2 LINE L2 -222 3050 2995 525 265 76 67 chr11 80996121 80996240 -67787232 + MIR SINE MIR 37 160 -102 13891 164 64 3 chr11 80996240 80997368 -67786104 - Tigger1 DNA MER2_type 0 2418 1360 2194 105 3 0 chr11 80997368 80997664 -67785808 - AluSg SINE Alu -13 297 1 13891 164 64 3 chr11 80997664 80998815 -67784657 - Tigger1 DNA MER2_type -1058 1360 1 525 265 76 67 chr11 80998815 80998918 -67784554 + MIR SINE MIR 160 261 -1 308 186 35 15 chr11 80999247 80999326 -67784146 - MIR SINE MIR -55 153 85 232 322 8 51 chr11 80999522 80999640 -67783832 + MIR SINE MIR 36 148 -60 325 297 30 30 chr11 81000074 81000175 -67783297 - MIR SINE MIR 0 262 162 192 273 0 0 chr11 81001588 81001654 -67781818 + (TG)n Simple_repeat Simple_repeat 2 67 0 2293 106 0 0 chr11 81002484 81002786 -67780686 + AluSg SINE Alu 1 302 -8 289 260 40 30 chr11 81004384 81004484 -67778988 - MIR SINE MIR -101 161 61 211 410 103 10 chr11 81005062 81005362 -67778110 + L2 LINE L2 2918 3245 -27 319 266 129 39 chr11 81005627 81005783 -67777689 + MIR SINE MIR 17 181 -58 290 357 54 12 chr11 81006592 81006774 -67776698 + MIR SINE MIR 13 193 -60 2031 129 0 7 chr11 81007064 81007359 -67776113 - AluSx SINE Alu -19 293 1 240 202 64 0 chr11 81007359 81007468 -67776004 + (TA)n Simple_repeat Simple_repeat 1 116 0 807 178 0 15 chr11 81007582 81007717 -67775755 + FLAM_C SINE Alu 1 133 0 1570 61 0 5 chr11 81107728 81107926 -67675546 - AluY SINE Alu -44 267 71 7670 29 1 2 chr11 81107927 81108830 -67674642 - L1PA2 LINE L1 0 6155 5254 807 240 131 11 chr11 81108942 81109209 -67674263 + MER21B LTR ERV1 508 806 -57 2035 148 24 43 chr11 81109240 81109613 -67673859 + MER47A DNA MER2_type 1 366 0 2151 99 6 3 chr11 81109830 81110142 -67673330 - AluSq SINE Alu 0 313 1 236 270 87 95 chr11 81110143 81110231 -67673241 + L2 LINE L2 3146 3234 -38 834 225 39 47 chr11 81110231 81110489 -67672983 - MIR SINE MIR -3 259 4 236 270 87 95 chr11 81110489 81110526 -67672946 + L2 LINE L2 3234 3270 -2 229 259 17 0 chr11 81110583 81110641 -67672831 - MIR SINE MIR -120 142 84 1959 77 0 11 chr11 81110778 81111039 -67672433 + AluSc SINE Alu 1 258 -51 300 158 0 0 chr11 81111145 81111202 -67672270 + A-rich Low_complexity Low_complexity 1 57 0 2176 90 3 10 chr11 81111246 81111545 -67671927 + AluSp SINE Alu 1 297 -16 258 330 98 39 chr11 81112676 81113009 -67670463 - L2 LINE L2 -222 3050 2695 1240 173 17 21 chr11 81113416 81113653 -67669819 + AluJo SINE Alu 1 236 -76 258 81 0 0 chr11 81113655 81113692 -67669780 + L1MC3 LINE L1 7061 7097 -688 245 272 54 11 chr11 81113692 81113784 -67669688 + MLT1F1 LTR MaLR 35 130 -437 314 146 0 0 chr11 81113785 81113833 -67669639 + L1MC3 LINE L1 7195 7242 -543 3183 223 85 21 chr11 81113959 81114749 -67668723 + MER21B LTR ERV1 19 858 -5 1715 160 39 44 chr11 81114749 81114807 -67668665 + L1MC3 LINE L1 7226 7283 -502 2268 96 3 0 chr11 81114807 81115109 -67668363 + AluSq SINE Alu 1 303 -10 1715 160 39 44 chr11 81115109 81115412 -67668060 + L1MC3 LINE L1 7283 7585 -200 1412 158 49 28 chr11 81115415 81115699 -67667773 + AluJo SINE Alu 1 290 -22 2134 161 50 9 chr11 81115704 81116126 -67667346 + L1MB4 LINE L1 5734 6172 -8 648 184 0 44 chr11 81116136 81116272 -67667200 - AluJb SINE Alu -48 264 135 275 258 32 32 chr11 81117668 81117761 -67665711 - MIR3 SINE MIR -40 168 76 226 241 83 90 chr11 81117794 81117927 -67665545 + MIR3 SINE MIR 14 145 -63 730 241 76 34 chr11 81118234 81118431 -67665041 + MIR SINE MIR 16 226 -36 2195 104 0 0 chr11 81118431 81118728 -67664744 - AluSx SINE Alu -15 297 1 730 241 76 34 chr11 81118728 81118767 -67664705 + MIR SINE MIR 226 262 0 584 190 36 0 chr11 81120125 81120262 -67663210 - AluSq SINE Alu -33 280 139 1918 121 16 3 chr11 81120433 81120738 -67662734 + AluSx SINE Alu 1 309 -3 667 188 265 0 chr11 81121024 81121194 -67662278 + MER20 DNA MER1_type 3 217 -2 2135 108 0 0 chr11 81121301 81121596 -67661876 + AluSg SINE Alu 1 295 -15 888 236 17 99 chr11 81121724 81121990 -67661482 + L1ME3A LINE L1 5792 6078 -92 243 0 0 0 chr11 81121990 81122017 -67661455 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1869 118 0 54 chr11 81122019 81122316 -67661156 - AluSx SINE Alu -31 281 1 888 236 17 99 chr11 81122316 81122435 -67661037 + L1ME3A LINE L1 6079 6161 -9 565 299 130 5 chr11 81123403 81123610 -67659862 + MIR SINE MIR 24 256 -6 1098 106 0 132 chr11 81125181 81125416 -67658056 - AluJo SINE Alu 0 312 109 1532 137 203 77 chr11 81125419 81125769 -67657703 - MER4A LTR ERV1 -10 654 261 446 148 114 0 chr11 81125769 81125857 -67657615 - MER4A LTR ERV1 -566 98 1 656 184 0 0 chr11 81125859 81125968 -67657504 - AluJo SINE Alu -202 110 2 305 229 48 12 chr11 81125968 81126051 -67657421 - MER117 DNA MER1_type -107 90 5 464 316 84 21 chr11 81126056 81126246 -67657226 - MIR SINE MIR -59 203 2 1962 134 3 10 chr11 81126481 81126780 -67656692 + AluSx SINE Alu 1 297 -15 1153 129 29 27 chr11 81126853 81127066 -67656406 - L1MA8 LINE L1 -107 6064 5891 21 57 0 0 chr11 81127128 81127163 -67656309 + AT_rich Low_complexity Low_complexity 1 35 0 279 79 0 0 chr11 81127622 81127660 -67655812 + (A)n Simple_repeat Simple_repeat 1 38 0 461 198 9 26 chr11 81128032 81128148 -67655324 - L1MB8 LINE L1 0 6178 6065 2018 164 151 32 chr11 81128149 81128465 -67655007 - L1MB8 LINE L1 -455 5711 5434 366 23 0 0 chr11 81128465 81128508 -67654964 + (TC)n Simple_repeat Simple_repeat 2 44 0 2018 164 151 32 chr11 81128508 81129067 -67654405 - L1MB8 LINE L1 -732 5434 4729 816 206 47 41 chr11 81129498 81129668 -67653804 + FAM SINE Alu 1 171 -4 1044 131 0 71 chr11 81129718 81129901 -67653571 + AluJo SINE Alu 1 170 -142 351 65 0 0 chr11 81129932 81129978 -67653494 + (TA)n Simple_repeat Simple_repeat 2 47 0 268 258 22 0 chr11 81129978 81130067 -67653405 - L1MC4 LINE L1 -1339 6703 6613 875 140 0 15 chr11 81130090 81130226 -67653246 + AluJb SINE Alu 131 264 -48 798 159 0 15 chr11 81130277 81130409 -67653063 - FLAM_A SINE Alu 0 133 4 23 0 0 0 chr11 81130489 81130512 -67652960 + AT_rich Low_complexity Low_complexity 1 23 0 2187 70 7 3 chr11 81131102 81131409 -67652063 - AluSq SINE Alu 0 308 1 23 0 0 0 chr11 81132022 81132045 -67651427 + AT_rich Low_complexity Low_complexity 1 23 0 2069 97 3 3 chr11 81132298 81132586 -67650886 + AluSg SINE Alu 17 304 -6 2204 100 3 0 chr11 81132600 81132901 -67650571 + AluSq SINE Alu 1 302 -11 237 250 36 0 chr11 81133059 81133115 -67650357 + MIR SINE MIR 85 142 -66 1898 106 27 40 chr11 81133323 81133624 -67649848 + AluSq SINE Alu 1 297 -16 2319 59 3 3 chr11 81133763 81134066 -67649406 + AluY SINE Alu 1 303 -8 407 175 68 0 chr11 81134830 81134933 -67648539 + L1MB8 LINE L1 5814 5923 -261 * 519 228 152 0 chr11 81134930 81135075 -67648397 - L1MB5 LINE L1 -36 6138 5972 850 125 7 7 chr11 81135103 81135247 -67648225 + L1MB8 LINE L1 6035 6178 0 526 226 151 0 chr11 81135258 81135404 -67648068 + L1MCc LINE L1 1052 1219 -5204 1388 243 93 48 chr11 81135412 81135539 -67647933 + L1MCc LINE L1 1296 1416 -5706 2004 86 54 0 chr11 81135539 81135818 -67647654 + AluSq SINE Alu 1 294 -19 1388 243 93 48 chr11 81135818 81136050 -67647422 + L1MCc LINE L1 1416 1636 -5486 1138 126 6 33 chr11 81136050 81136233 -67647239 + L1PA8A LINE L1 5952 6129 -2 1388 243 93 48 chr11 81136233 81136846 -67646626 + L1MCc LINE L1 1636 2518 -4604 914 207 128 6 chr11 81136849 81136863 -67646609 + L1MCc LINE L1 3822 3833 -3108 1861 118 24 10 chr11 81136863 81137229 -67646243 + AluSx SINE Alu 1 312 0 914 207 128 6 chr11 81137229 81137543 -67645929 + L1MCc LINE L1 3833 4190 -2751 192 40 0 0 chr11 81137903 81137928 -67645544 + (TC)n Simple_repeat Simple_repeat 1 25 0 259 322 158 23 chr11 81137989 81138166 -67645306 + MIR SINE MIR 23 223 -39 338 257 10 59 chr11 81138251 81138352 -67645120 + L2 LINE L2 3160 3255 -17 270 81 0 0 chr11 81138356 81138393 -67645079 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 1597 110 80 34 chr11 81138638 81138901 -67644571 + AluSx SINE Alu 11 285 -27 207 0 0 0 chr11 81139025 81139048 -67644424 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1142 219 9 9 chr11 81140298 81140526 -67642946 + MIR SINE MIR 21 248 -14 958 147 7 7 chr11 81140760 81140910 -67642562 + MER5A DNA MER1_type 1 150 -39 265 246 66 0 chr11 81141493 81141554 -67641918 - MIR SINE MIR -13 249 185 1572 168 0 28 chr11 81141558 81141844 -67641628 - AluJo SINE Alu -30 282 5 383 206 84 37 chr11 81141849 81141956 -67641516 - MIR SINE MIR -52 210 99 2320 77 10 13 chr11 81142375 81142685 -67640787 + AluY SINE Alu 1 309 -2 235 290 51 68 chr11 81143164 81143340 -67640132 + L2 LINE L2 2436 2608 -706 684 258 141 19 chr11 81143394 81143650 -67639822 + LTR33 LTR ERVL 235 521 0 256 293 138 0 chr11 81143711 81143827 -67639645 + L2 LINE L2 2690 2821 -493 438 271 164 21 chr11 81144272 81144491 -67638981 + MIR SINE MIR 17 256 -6 2071 70 30 27 chr11 81145402 81145700 -67637772 - AluY SINE Alu -12 299 1 492 249 141 27 chr11 81145707 81146045 -67637427 + L2 LINE L2 2694 3060 -212 199 321 175 7 chr11 81146272 81146409 -67637063 + L2 LINE L2 3112 3271 -1 237 250 94 88 chr11 81146504 81146664 -67636808 - MIR SINE MIR -56 206 46 335 266 53 18 chr11 81146911 81147024 -67636448 + L2 LINE L2 2880 2996 -276 528 218 63 14 chr11 81147789 81147931 -67635541 - MIR SINE MIR -6 256 108 192 158 0 0 chr11 81148443 81148481 -67634991 + (CCG)n Simple_repeat Simple_repeat 3 40 0 290 242 94 164 chr11 81149288 81149409 -67634063 + L2 LINE L2 2997 3094 -178 1668 162 7 7 chr11 81149409 81149699 -67633773 - AluJb SINE Alu -22 290 1 290 242 94 164 chr11 81149699 81149821 -67633651 + L2 LINE L2 3094 3223 -49 21 0 0 0 chr11 81149828 81149849 -67633623 + AT_rich Low_complexity Low_complexity 1 21 0 248 182 0 0 chr11 81149855 81149899 -67633573 + L2 LINE L2 3010 3053 -219 523 232 221 21 chr11 81150028 81150218 -67633254 + MIR SINE MIR 8 235 -27 251 175 0 0 chr11 81150534 81150574 -67632898 - MLT1C LTR MaLR 0 467 428 1239 181 9 4 chr11 81150580 81150807 -67632665 + AluJb SINE Alu 64 291 -21 277 313 10 30 chr11 81150890 81150989 -67632483 - L2 LINE L2 -226 3046 2950 184 287 23 69 chr11 81150993 81151080 -67632392 - L2 LINE L2 0 3272 3190 243 318 0 0 chr11 81151191 81151254 -67632218 + MIR SINE MIR 200 262 0 2167 106 0 10 chr11 81151285 81151587 -67631885 - AluSx SINE Alu -13 299 1 23 68 0 0 chr11 81151643 81151687 -67631785 + AT_rich Low_complexity Low_complexity 1 44 0 201 291 121 48 chr11 81152362 81152527 -67630945 - L2 LINE L2 -278 2994 2818 218 274 139 117 chr11 81152766 81153032 -67630440 + L2 LINE L2 3000 3271 -1 385 243 48 19 chr11 81153116 81153219 -67630253 - MIR3 SINE MIR -90 118 13 1429 174 63 11 chr11 81153650 81153947 -67629525 - AluJb SINE Alu 0 311 1 650 254 43 24 chr11 81154034 81154243 -67629229 - L2 LINE L2 -472 2842 2630 225 350 65 16 chr11 81154421 81154544 -67628928 + MIR3 SINE MIR 4 132 -76 348 269 64 82 chr11 81154568 81154632 -67628840 - MIR SINE MIR -48 214 150 1766 135 62 0 chr11 81154632 81154920 -67628552 - AluSx SINE Alu -6 306 1 348 269 64 82 chr11 81154920 81155026 -67628446 - MIR SINE MIR -112 150 47 1566 156 17 24 chr11 81155160 81155448 -67628024 + L1MC4 LINE L1 6773 7058 -984 1744 246 133 23 chr11 81155455 81155564 -67627908 + L1MC4 LINE L1 7238 7334 -708 2328 52 3 20 chr11 81155564 81155870 -67627602 + AluY SINE Alu 1 301 -10 1744 246 133 23 chr11 81155870 81156287 -67627185 + L1MC4 LINE L1 7334 7842 -200 1656 161 0 39 chr11 81156287 81156395 -67627077 + AluJo SINE Alu 1 112 -200 2231 66 42 0 chr11 81156395 81156683 -67626789 + AluY SINE Alu 1 300 -11 1656 161 0 39 chr11 81156683 81156884 -67626588 + AluJo SINE Alu 112 298 -14 1744 246 133 23 chr11 81156884 81156963 -67626509 + L1MC4 LINE L1 7842 7911 -131 2286 95 3 0 chr11 81157130 81157435 -67626037 + AluSp SINE Alu 1 306 -7 314 227 227 0 chr11 81157437 81157512 -67625960 - MER31A LTR ERV1 -41 444 353 276 250 148 11 chr11 81157527 81157615 -67625857 - MIR SINE MIR -2 260 161 198 218 200 0 chr11 81157649 81157704 -67625768 - MIR SINE MIR -195 67 2 713 198 85 28 chr11 81158382 81158567 -67624905 - MLT1C LTR MaLR -35 432 259 1705 135 0 103 chr11 81158567 81158676 -67624796 - AluSx SINE Alu -7 305 186 2114 82 7 16 chr11 81158676 81158982 -67624490 - AluSp SINE Alu -10 303 1 1705 135 0 103 chr11 81158982 81159212 -67624260 - AluSx SINE Alu -126 186 1 713 198 85 28 chr11 81159212 81159395 -67624077 - MLT1C LTR MaLR -208 259 1 1691 224 66 20 chr11 81159504 81160196 -67623276 + L1M4c LINE L1 2189 2899 -3483 1177 256 111 64 chr11 81161536 81162052 -67621420 + MLT1F1 LTR MaLR 3 567 0 1848 104 42 24 chr11 81163308 81163811 -67619661 + SVA Other Other 494 868 -592 6297 64 13 57 chr11 81163824 81164820 -67618652 + SVA Other Other 433 1384 -2 503 265 15 8 chr11 81165248 81165380 -67618092 + L1MEc LINE L1 1688 1820 -4576 29 0 0 0 chr11 81165481 81165510 -67617962 + AT_rich Low_complexity Low_complexity 1 29 0 787 161 0 29 chr11 81165642 81165779 -67617693 - FLAM_C SINE Alu 0 133 1 397 224 46 66 chr11 81165995 81166191 -67617281 + L1MEd LINE L1 1108 1299 -4906 288 323 78 5 chr11 81166276 81166493 -67616979 + L1MEd LINE L1 1585 1817 -4579 188 320 160 10 chr11 81166857 81166957 -67616515 + MIR SINE MIR 110 224 -38 182 255 193 76 chr11 81167074 81167144 -67616328 - MIR SINE MIR -75 187 127 300 218 282 14 chr11 81167144 81167286 -67616186 - MER104 DNA MER2_type 0 180 1 182 255 193 76 chr11 81167286 81167360 -67616112 - MIR SINE MIR -135 127 26 235 203 95 54 chr11 81168008 81168082 -67615390 - MIR3 SINE MIR -16 192 116 184 340 75 0 chr11 81168095 81168189 -67615283 + L2 LINE L2 2950 3050 -222 254 271 113 38 chr11 81168619 81168752 -67614720 + L2 LINE L2 3114 3256 -57 * 395 290 54 54 chr11 81168737 81168923 -67614549 - MIR SINE MIR -1 261 76 2203 81 3 3 chr11 81168983 81169279 -67614193 + AluSg SINE Alu 1 296 -14 658 208 78 16 chr11 81169710 81170089 -67613383 + L1ME3A LINE L1 5385 5918 -252 2149 110 23 13 chr11 81170089 81170388 -67613084 + AluSq SINE Alu 3 304 -9 658 208 78 16 chr11 81170388 81170488 -67612984 + L1ME3A LINE L1 5918 6010 -160 2173 110 3 16 chr11 81170497 81170814 -67612658 + AluSp SINE Alu 1 313 0 302 265 31 20 chr11 81172519 81172617 -67610855 + MIR SINE MIR 50 148 -114 227 312 21 0 chr11 81173191 81173284 -67610188 + L2 LINE L2 834 928 -2386 462 306 100 27 chr11 81173295 81173596 -67609876 + L2 LINE L2 2828 3150 -163 513 284 86 27 chr11 81173603 81173825 -67609647 + HsTC2c DNA Tc2 8 242 -487 2095 243 100 5 chr11 81173913 81174484 -67608988 + L1ME3A LINE L1 5515 6139 -31 515 152 27 62 chr11 81174497 81174609 -67608863 + HsTC2c DNA Tc2 274 381 -348 491 323 64 0 chr11 81174649 81174869 -67608603 + HsTC2c DNA Tc2 485 718 -11 1673 177 3 10 chr11 81175119 81175287 -67608185 - AluJo SINE Alu -26 286 119 234 0 0 0 chr11 81175287 81175313 -67608159 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1673 177 3 10 chr11 81175313 81175432 -67608040 - AluJo SINE Alu -193 119 1 1331 177 161 4 chr11 81175440 81175694 -67607778 - AluJb SINE Alu -6 296 3 2160 117 7 0 chr11 81175756 81176054 -67607418 + AluSq SINE Alu 1 300 -13 1128 137 79 5 chr11 81176075 81176265 -67607207 - MER3 DNA MER1_type 0 209 6 2479 90 6 0 chr11 81176348 81176659 -67606813 - AluSp SINE Alu 0 313 1 318 175 0 0 chr11 81176967 81177024 -67606448 - L2 LINE L2 0 3272 3216 2035 146 7 0 chr11 81177309 81177604 -67605868 + AluJb SINE Alu 1 297 -15 216 292 28 0 chr11 81177873 81177945 -67605527 - L3 LINE CR1 -20 1557 1484 186 333 0 0 chr11 81178366 81178417 -67605055 - L2 LINE L2 -12 3260 3210 226 159 217 29 chr11 81179229 81179253 -67604219 - L2 LINE L2 -5 3308 3290 685 151 14 43 chr11 81179253 81179392 -67604080 - L1PA2 LINE L1 0 6155 6021 226 159 217 29 chr11 81179392 81179436 -67604036 - L2 LINE L2 -23 3290 3227 198 320 131 13 chr11 81180074 81180227 -67603245 + MIR3 SINE MIR 32 202 -6 1433 138 23 0 chr11 81180363 81180580 -67602892 + AluSg/x SINE Alu 89 310 0 268 250 120 0 chr11 81180593 81180685 -67602787 - L1ME LINE L1 -511 5610 5508 2201 117 13 0 chr11 81181110 81181410 -67602062 + AluSq SINE Alu 1 304 -9 352 318 52 7 chr11 81181669 81181823 -67601649 + MIR SINE MIR 52 212 -50 38 22 0 0 chr11 81181871 81181916 -67601556 + AT_rich Low_complexity Low_complexity 1 45 0 2372 93 0 3 chr11 81181961 81182262 -67601210 - AluSx SINE Alu -12 300 1 2087 226 74 24 chr11 81182517 81183153 -67600319 + L1MC4a LINE L1 5400 6067 -1741 30 69 0 0 chr11 81183176 81183234 -67600238 + AT_rich Low_complexity Low_complexity 1 58 0 1967 252 71 82 chr11 81183239 81183567 -67599905 - L2 LINE L2 -15 3298 2968 2116 128 0 3 chr11 81183567 81183857 -67599615 + AluSc SINE Alu 1 289 -20 1967 252 71 82 chr11 81183857 81184580 -67598892 - L2 LINE L2 -345 2968 2256 1706 176 27 7 chr11 81184612 81184913 -67598559 + AluJb SINE Alu 3 309 -3 2497 59 0 43 chr11 81185052 81185374 -67598098 + AluY SINE Alu 1 308 -3 259 275 118 34 chr11 81185896 81186074 -67597398 - MIR3 SINE MIR -9 199 7 769 228 179 65 chr11 81186558 81186638 -67596834 + MLT1J2 LTR MaLR 27 96 -354 2144 137 0 3 chr11 81186638 81186951 -67596521 + AluSx SINE Alu 1 312 0 769 228 179 65 chr11 81186951 81187238 -67596234 + MLT1J2 LTR MaLR 96 436 -14 2080 118 0 14 chr11 81187278 81187611 -67595861 + AluSx SINE Alu 1 329 0 1955 101 25 18 chr11 81187703 81187981 -67595491 + AluSg SINE Alu 2 281 -29 1503 211 0 7 chr11 81188150 81188448 -67595024 + AluJb SINE Alu 10 305 0 248 344 31 21 chr11 81188611 81188707 -67594765 - MIR SINE MIR -109 153 57 21 82 0 0 chr11 81189012 81189061 -67594411 + AT_rich Low_complexity Low_complexity 1 49 0 208 259 35 47 chr11 81189609 81189694 -67593778 + MIR SINE MIR 108 191 -71 2041 122 178 4 chr11 81191069 81191542 -67591930 + MER51A LTR ERV1 1 625 -9 373 230 18 53 chr11 81191727 81191840 -67591632 - MIR SINE MIR -9 253 145 2310 52 42 11 chr11 81191845 81192132 -67591340 - AluY SINE Alu -15 296 1 2131 117 3 7 chr11 81192159 81192457 -67591015 - AluSx SINE Alu -15 297 1 228 275 126 72 chr11 81192671 81192878 -67590594 + L3 LINE CR1 1357 1574 -3 1358 142 5 9 chr11 81193142 81193354 -67590118 - AluJo SINE Alu -15 297 87 2321 86 3 7 chr11 81193363 81193664 -67589808 - AluSc SINE Alu -9 300 1 907 138 0 35 chr11 81193782 81193927 -67589545 + AluJo SINE Alu 1 140 -172 2103 127 3 13 chr11 81193927 81194227 -67589245 + AluSx SINE Alu 1 297 -15 2228 121 0 3 chr11 81194229 81194536 -67588936 + AluSx SINE Alu 1 306 -6 1673 222 21 14 chr11 81194551 81194974 -67588498 + L1MC4a LINE L1 4740 5165 -981 2736 111 12 63 chr11 81195480 81195959 -67587513 - L1PA15 LINE L1 -2 6163 5709 1607 191 33 10 chr11 81196388 81196691 -67586781 + AluJo SINE Alu 1 310 -2 2468 61 7 0 chr11 81196829 81197125 -67586347 + AluY SINE Alu 1 298 -13 2177 116 3 0 chr11 81197251 81197553 -67585919 - AluSx SINE Alu -9 303 1 518 272 72 28 chr11 81197557 81197737 -67585735 + MLT1K LTR MaLR 288 475 -113 2356 101 0 0 chr11 81198491 81198797 -67584675 + AluSg SINE Alu 1 306 -4 1148 204 220 57 chr11 81198908 81199401 -67584071 + MLT1G1 LTR MaLR 1 592 -3 431 237 205 6 chr11 81199792 81199948 -67583524 - MER58C DNA MER1_type -28 187 1 567 203 14 70 chr11 81201198 81201341 -67582131 + L1MC5 LINE L1 7754 7888 -73 204 40 0 0 chr11 81201343 81201368 -67582104 + (TC)n Simple_repeat Simple_repeat 2 26 0 234 299 10 0 chr11 81201368 81201404 -67582068 + (TA)n Simple_repeat Simple_repeat 2 36 -63 201 94 0 0 chr11 81201404 81201436 -67582036 + (CA)n Simple_repeat Simple_repeat 2 33 0 234 299 10 0 chr11 81201436 81201496 -67581976 + (TA)n Simple_repeat Simple_repeat 36 99 0 25 0 0 0 chr11 81201973 81201998 -67581474 + AT_rich Low_complexity Low_complexity 1 25 0 626 186 62 17 chr11 81202001 81202178 -67581294 + L1MC4a LINE L1 5256 5440 -2368 1627 128 94 62 chr11 81202206 81202525 -67580947 - MSTC LTR MaLR -103 325 8 1912 148 0 47 chr11 81202578 81202895 -67580577 + AluJo SINE Alu 1 302 -10 529 238 67 37 chr11 81202961 81203125 -67580347 + L1MC4a LINE L1 5704 5872 -1936 878 201 0 0 chr11 81203215 81203369 -67580103 - AluJb SINE Alu -30 282 129 1095 166 72 127 chr11 81203506 81203585 -67579887 - MER2 DNA MER2_type 0 345 263 693 111 0 0 chr11 81203585 81203684 -67579788 + HY3 scRNA scRNA 1 99 -2 1095 166 72 127 chr11 81203684 81203882 -67579590 - MER2 DNA MER2_type -82 263 90 2381 86 7 0 chr11 81203882 81204183 -67579289 - AluY SINE Alu -8 303 1 1095 166 72 127 chr11 81204183 81204266 -67579206 - MER2 DNA MER2_type -255 90 4 397 300 25 50 chr11 81204754 81204914 -67578558 + MIR3 SINE MIR 5 160 -48 281 246 238 32 chr11 81204914 81205040 -67578432 - MER5A DNA MER1_type 0 189 38 183 327 0 0 chr11 81205048 81205100 -67578372 + L3 LINE CR1 1525 1576 -1 2282 79 7 30 chr11 81205114 81205419 -67578053 - AluSc SINE Alu -11 298 1 25 0 0 0 chr11 81205596 81205621 -67577851 + AT_rich Low_complexity Low_complexity 1 25 0 387 292 119 30 chr11 81205629 81205831 -67577641 - MIR SINE MIR -41 221 2 671 113 38 0 chr11 81205908 81206014 -67577458 + HY1 scRNA scRNA 2 111 -1 672 165 41 0 chr11 81206258 81206379 -67577093 + FLAM_C SINE Alu 2 127 -16 2244 122 0 6 chr11 81206386 81206698 -67576774 - AluY SINE Alu -1 310 1 1324 239 101 88 chr11 81206701 81207191 -67576281 + L1MC4 LINE L1 7265 7768 -274 3702 102 0 12 chr11 81207191 81207708 -67575764 + MER9 LTR ERVK 1 511 0 1324 239 101 88 chr11 81207708 81207891 -67575581 + L1MC4 LINE L1 7768 7947 -95 242 224 26 103 chr11 81207893 81208009 -67575463 - MIR SINE MIR -107 155 49 28 0 0 0 chr11 81208113 81208141 -67575331 + AT_rich Low_complexity Low_complexity 1 28 0 411 227 34 107 chr11 81208252 81208374 -67575098 + MER21B LTR ERV1 3 132 -731 * 2030 221 55 5 chr11 81208351 81208749 -67574723 + MER21B LTR ERV1 19 436 -427 238 244 44 22 chr11 81209209 81209299 -67574173 - MIR SINE MIR -113 149 58 294 216 122 11 chr11 81209340 81209470 -67574002 + MIR SINE MIR 34 185 -62 2010 138 3 16 chr11 81209503 81209815 -67573657 + AluJb SINE Alu 1 308 -4 486 331 122 11 chr11 81209895 81210182 -67573290 + L2 LINE L2 2487 2805 -509 251 369 70 21 chr11 81210477 81210664 -67572808 + L2 LINE L2 2866 3061 -211 287 272 0 25 chr11 81210871 81210952 -67572520 + MIR SINE MIR 15 93 -169 355 280 10 0 chr11 81212356 81212465 -67571007 + MIR SINE MIR 46 154 -65 204 302 0 21 chr11 81213371 81213467 -67570005 + L2 LINE L2 2636 2729 -585 1835 150 4 4 chr11 81214093 81214366 -67569106 + AluJb SINE Alu 1 273 -39 493 161 9 9 chr11 81214392 81214504 -67568968 + G-rich Low_complexity Low_complexity 3 114 0 445 297 108 13 chr11 81214809 81215041 -67568431 - L1ME LINE L1 -356 5765 5512 201 341 0 0 chr11 81216363 81216448 -67567024 - MIR3 SINE MIR -43 165 81 390 286 37 12 chr11 81216465 81216626 -67566846 + MIR3 SINE MIR 6 170 -38 336 322 17 17 chr11 81217768 81217918 -67565554 + MIR3 SINE MIR 13 163 -45 569 183 42 0 chr11 81219668 81219788 -67563684 - MIR SINE MIR -117 145 21 1945 149 10 10 chr11 81219956 81220257 -67563215 + AluJo SINE Alu 1 301 -11 251 274 164 13 chr11 81221994 81222149 -67561323 + MIR SINE MIR 2 189 -19 1522 236 52 5 chr11 81222156 81222601 -67560871 + Charlie4a DNA MER1_type 43 508 0 225 65 0 0 chr11 81222765 81222796 -67560676 + (CGAGG)n Simple_repeat Simple_repeat 1 31 0 288 330 32 33 chr11 81222989 81223179 -67560293 + MIR3 SINE MIR 4 190 -52 186 376 12 12 chr11 81223486 81223571 -67559901 + MIR SINE MIR 57 141 -121 536 304 62 0 chr11 81224062 81224256 -67559216 - MIR SINE MIR -12 250 45 344 217 12 12 chr11 81224369 81224452 -67559020 + MIR SINE MIR 81 163 -99 377 354 72 9 chr11 81224889 81225112 -67558360 + MIR SINE MIR 20 256 -6 183 268 179 0 chr11 81226150 81226206 -67557266 + MIR SINE MIR 36 101 -161 372 309 34 0 chr11 81226437 81226586 -67556886 - MIR3 SINE MIR -18 190 37 550 190 261 0 chr11 81227021 81227163 -67556309 + MER5A DNA MER1_type 9 187 -2 353 278 26 43 chr11 81228155 81228270 -67555202 + MLT1K LTR MaLR 278 390 -198 204 274 131 13 chr11 81228300 81228453 -67555019 + L2 LINE L2 3076 3246 -26 456 160 84 59 chr11 81228849 81228968 -67554504 + MIR3 SINE MIR 46 167 -41 311 234 80 80 chr11 81229924 81230061 -67553411 - MIR3 SINE MIR -67 141 5 492 284 68 21 chr11 81230427 81230548 -67552924 + MIR SINE MIR 61 196 -66 2537 66 0 0 chr11 81230548 81230851 -67552621 - AluY SINE Alu -8 303 1 492 284 68 21 chr11 81230851 81230919 -67552553 + MIR SINE MIR 196 259 -3 254 244 26 13 chr11 81231313 81231391 -67552081 - L2 LINE L2 -23 3290 3212 213 325 32 16 chr11 81231449 81231575 -67551897 - L2 LINE L2 -110 3203 3076 453 251 165 18 chr11 81231736 81231939 -67551533 + MIR SINE MIR 22 257 -5 282 321 18 18 chr11 81232000 81232112 -67551360 + MIR SINE MIR 19 130 -132 188 274 24 24 chr11 81234124 81234208 -67549264 - MIR SINE MIR -65 143 60 341 286 24 16 chr11 81234222 81234348 -67549124 - MIR3 SINE MIR -22 186 60 314 225 54 45 chr11 81234478 81234589 -67548883 - MIR SINE MIR -63 145 34 297 319 112 50 chr11 81234865 81235106 -67548366 + L2 LINE L2 2932 3187 -85 693 300 123 60 chr11 81235689 81235805 -67547667 - L2 LINE L2 0 3313 3206 2197 131 0 6 chr11 81235805 81236119 -67547353 - AluSx SINE Alu 0 312 1 693 300 123 60 chr11 81236119 81236512 -67546960 - L2 LINE L2 -107 3206 2776 304 231 185 23 chr11 81236757 81236887 -67546585 + MIR3 SINE MIR 10 160 -48 182 356 68 34 chr11 81237203 81237380 -67546092 - L3 LINE CR1 -105 1472 1290 268 294 157 0 chr11 81237679 81237781 -67545691 - L3 LINE CR1 -39 1538 1421 306 315 85 24 chr11 81238542 81238707 -67544765 + L1ME4a LINE L1 5772 5946 -175 39041 36 27 2 chr11 81239983 81244949 -67538523 - L1P LINE L1 -1052 5094 4 644 48 0 0 chr11 81244949 81245032 -67538440 - AluSc SINE Alu -225 84 2 269 167 0 0 chr11 81245032 81245080 -67538392 - L1M4 LINE L1 -352 5832 5785 234 105 0 0 chr11 81245082 81245120 -67538352 - MADE1 DNA Mariner -42 38 1 2611 145 20 43 chr11 81245124 81245301 -67538171 - L1M4 LINE L1 -408 5776 5596 2588 64 0 10 chr11 81245301 81245615 -67537857 - AluY SINE Alu 0 311 1 2611 145 20 43 chr11 81245615 81245832 -67537640 - L1M4 LINE L1 -588 5596 5376 1688 182 7 29 chr11 81245832 81246140 -67537332 - AluJb SINE Alu -11 301 1 2611 145 20 43 chr11 81246140 81246409 -67537063 - L1M4 LINE L1 -808 5376 5126 922 158 43 5 chr11 81246903 81247087 -67536385 + L1MB3 LINE L1 5993 6183 0 576 253 25 6 chr11 81247576 81247738 -67535734 - MIR SINE MIR 0 262 98 237 336 87 29 chr11 81247943 81248047 -67535425 - MIR SINE MIR -82 126 17 189 74 0 0 chr11 81248183 81248210 -67535262 + (TC)n Simple_repeat Simple_repeat 2 28 0 608 266 92 5 chr11 81248529 81248747 -67534725 - LTR16A1 LTR ERVL 0 457 221 443 286 161 45 chr11 81249846 81249935 -67533537 - L2 LINE L2 -62 3210 3133 2366 104 0 19 chr11 81249935 81250252 -67533220 + AluSp SINE Alu 1 311 -2 443 286 161 45 chr11 81250252 81250663 -67532809 - L2 LINE L2 -139 3133 2667 1165 186 27 30 chr11 81250721 81250804 -67532668 - MER58D DNA MER1_type -2082 338 256 1988 138 0 10 chr11 81250804 81251116 -67532356 - AluSx SINE Alu 0 309 1 2220 154 3 0 chr11 81251118 81251437 -67532035 - 7SLRNA srpRNA srpRNA 0 320 1 1165 186 27 30 chr11 81251437 81251644 -67531828 - MER58D DNA MER1_type -2165 255 45 341 346 0 0 chr11 81251966 81252070 -67531402 - MIR3 SINE MIR -91 117 14 242 137 39 20 chr11 81252235 81252286 -67531186 - MIR SINE MIR -64 144 93 1918 193 29 60 chr11 81252291 81252810 -67530662 + MLT1D LTR MaLR 1 503 -2 9060 194 58 29 chr11 81252839 81253857 -67529615 - L1MC3 LINE L1 -7 7778 6792 2151 131 10 6 chr11 81253857 81254169 -67529303 - AluSq SINE Alu 0 313 1 9060 194 58 29 chr11 81254169 81254782 -67528690 - L1MC3 LINE L1 -993 6792 6199 2257 96 0 30 chr11 81254782 81255083 -67528389 - AluSq SINE Alu -21 292 1 9060 194 58 29 chr11 81255083 81255641 -67527831 - L1MC3 LINE L1 -1586 6199 5523 352 318 28 0 chr11 81255718 81255825 -67527647 + MIR SINE MIR 12 121 -141 557 292 25 2 chr11 81255857 81256090 -67527382 - LTR16A LTR ERVL 0 450 159 316 269 124 28 chr11 81256205 81256350 -67527122 + MIR3 SINE MIR 11 169 -39 1033 217 93 20 chr11 81256461 81256761 -67526711 + MER5C DNA MER1_type 3 324 0 2496 77 3 0 chr11 81256828 81257128 -67526344 + AluSp SINE Alu 1 301 -12 2361 79 3 7 chr11 81257223 81257513 -67525959 + AluSg SINE Alu 2 290 -20 270 254 0 0 chr11 81257793 81257856 -67525616 - MIR SINE MIR -68 140 78 233 281 0 0 chr11 81258056 81258113 -67525359 + MIR SINE MIR 194 250 -12 250 289 145 0 chr11 81258310 81258393 -67525079 + L2 LINE L2 3169 3263 -9 366 256 64 70 chr11 81259009 81259181 -67524291 - MLT1J2 LTR MaLR -3 447 277 1712 224 107 20 chr11 81259511 81260007 -67523465 + MLT1F LTR MaLR 1 539 -3 223 330 99 40 chr11 81260766 81261039 -67522433 - L2 LINE L2 -173 3099 2811 578 305 45 0 chr11 81261097 81261297 -67522175 + LTR33 LTR ERVL 12 220 -301 200 395 31 0 chr11 81261507 81261636 -67521836 - L2 LINE L2 -543 2771 2639 875 213 51 20 chr11 81261765 81262018 -67521454 + MLT1H LTR MaLR 3 263 -286 2456 95 0 19 chr11 81262620 81262936 -67520536 - AluSg SINE Alu 0 310 1 528 262 87 12 chr11 81262951 81263123 -67520349 - MIR SINE MIR -31 231 47 2410 107 0 0 chr11 81263520 81263828 -67519644 + AluSx SINE Alu 1 308 -4 563 266 27 77 chr11 81263857 81263991 -67519481 + MIR SINE MIR 37 157 -105 2213 108 14 0 chr11 81263991 81264279 -67519193 + AluSq SINE Alu 1 292 -21 563 266 27 77 chr11 81264279 81264366 -67519106 + MIR SINE MIR 157 247 -15 245 289 97 0 chr11 81264399 81264513 -67518959 + L2 LINE L2 3126 3250 -63 297 300 77 24 chr11 81264877 81265047 -67518425 + MIR3 SINE MIR 15 193 -15 259 240 94 31 chr11 81266153 81266249 -67517223 + MIR SINE MIR 37 138 -70 241 258 50 82 chr11 81266300 81266444 -67517028 + MIR SINE MIR 47 180 -65 2395 72 31 0 chr11 81266577 81266870 -67516602 + AluSx SINE Alu 1 302 -10 1527 184 81 3 chr11 81266878 81267188 -67516284 - MER2 DNA MER2_type -8 337 4 1742 153 36 11 chr11 81267985 81268298 -67515174 - AluSx SINE Alu 0 320 1 906 312 36 22 chr11 81268355 81268769 -67514703 + L1MC4a LINE L1 5521 5940 -1868 1148 85 13 20 chr11 81268889 81269042 -67514430 - AluSg/x SINE Alu -12 298 147 231 340 102 6 chr11 81269427 81269589 -67513883 + MIR SINE MIR 19 196 -66 296 213 40 0 chr11 81269805 81269880 -67513592 - L1MB7 LINE L1 -24 6160 6083 838 143 256 18 chr11 81269885 81270053 -67513419 + AluJo SINE Alu 6 213 -99 922 108 70 0 chr11 81270318 81270447 -67513025 + AluSg SINE Alu 1 138 -172 249 83 0 0 chr11 81470465 81470501 -67312971 + (GA)n Simple_repeat Simple_repeat 1 36 0 384 250 10 31 chr11 81470647 81470743 -67312729 - MLT1L LTR MaLR -421 194 101 396 229 121 29 chr11 81470748 81470888 -67312584 - MER5A DNA MER1_type 0 189 37 * 884 150 7 7 chr11 81470772 81470912 -67312560 + MER5A DNA MER1_type 48 187 -2 252 232 49 0 chr11 81470934 81471016 -67312456 - MLT1L LTR MaLR -522 93 8 310 297 93 8 chr11 81471213 81471331 -67312141 + MIR SINE MIR 104 231 -31 1701 146 75 11 chr11 81471388 81471679 -67311793 - AluJo SINE Alu 0 308 1 21 0 0 0 chr11 81471947 81471968 -67311504 + AT_rich Low_complexity Low_complexity 1 21 0 197 322 44 22 chr11 81472015 81472105 -67311367 - MIR3 SINE MIR -25 183 92 2165 118 3 0 chr11 81472109 81472405 -67311067 - AluSq SINE Alu -16 297 1 576 303 34 11 chr11 81472927 81473105 -67310367 - MIR3 SINE MIR -26 182 1 422 318 46 12 chr11 81473129 81473302 -67310170 + MIR SINE MIR 12 190 -72 567 221 92 0 chr11 81473371 81473502 -67309970 + MIR SINE MIR 64 206 -56 1098 195 57 89 chr11 81473502 81473579 -67309893 - MER39 LTR ERV1 0 707 629 2396 59 7 3 chr11 81473579 81473885 -67309587 + AluSx SINE Alu 1 307 -5 1098 195 57 89 chr11 81473885 81474317 -67309155 - MER39 LTR ERV1 -78 629 5 193 194 0 0 chr11 81474336 81474372 -67309100 + L2 LINE L2 3223 3258 -14 206 323 0 32 chr11 81475292 81475354 -67308118 - L2 LINE L2 -3 3269 3210 * 421 291 77 33 chr11 81475324 81475519 -67307953 - MIR SINE MIR -27 235 38 198 0 0 0 chr11 81475764 81475786 -67307686 + (T)n Simple_repeat Simple_repeat 1 22 0 244 291 12 23 chr11 81476002 81476088 -67307384 + MIR3 SINE MIR 106 190 -18 315 297 162 0 chr11 81476504 81476652 -67306820 - L3 LINE CR1 -234 1343 1172 232 138 62 46 chr11 81477017 81477082 -67306390 + (TATTG)n Simple_repeat Simple_repeat 3 68 0 501 277 0 79 chr11 81477224 81477401 -67306071 - MIR SINE MIR -77 185 23 2302 78 24 3 chr11 81477652 81477945 -67305527 + AluSq SINE Alu 1 299 -14 205 205 0 0 chr11 81478547 81478586 -67304886 + T-rich Low_complexity Low_complexity 1 39 0 474 246 62 0 chr11 81478641 81478771 -67304701 - HAL1 LINE L1 -2366 141 4 265 390 0 0 chr11 81478855 81478932 -67304540 + MIR SINE MIR 19 95 -167 204 40 0 0 chr11 81478940 81478965 -67304507 + (T)n Simple_repeat Simple_repeat 1 25 0 411 270 40 20 chr11 81479158 81479310 -67304162 + LTR67 LTR ERVL 380 534 -23 180 308 46 0 chr11 81479372 81479437 -67304035 + L2 LINE L2 2907 2974 -298 555 293 21 0 chr11 81480035 81480175 -67303297 - L2 LINE L2 0 3313 3171 585 195 28 151 chr11 81480249 81480371 -67303101 - MIR SINE MIR 0 262 185 2250 110 0 0 chr11 81480371 81480670 -67302802 - AluY SINE Alu -12 299 1 585 195 28 151 chr11 81480670 81480798 -67302674 - MIR SINE MIR -77 185 43 224 263 123 18 chr11 81481590 81481704 -67301768 - L2 LINE L2 -19 3294 3169 511 200 45 0 chr11 81482461 81482571 -67300901 - L2 LINE L2 0 3313 3199 228 327 93 28 chr11 81482590 81482697 -67300775 - L2 LINE L2 -214 3058 2945 245 413 87 14 chr11 81482741 81483085 -67300387 - L2 LINE L2 -452 2862 2494 397 313 87 87 chr11 81483099 81483311 -67300161 - L2 LINE L2 -2 3270 3056 2495 51 0 13 chr11 81483311 81483624 -67299848 - AluY SINE Alu -1 310 2 397 313 87 87 chr11 81483624 81483766 -67299706 - L2 LINE L2 -215 3057 2916 236 265 0 12 chr11 81483787 81483870 -67299602 + GA-rich Low_complexity Low_complexity 4 85 0 22 35 0 0 chr11 81483953 81483982 -67299490 + AT_rich Low_complexity Low_complexity 1 29 0 404 339 122 49 chr11 81483988 81484536 -67298936 - L2 LINE L2 -1403 1911 1324 317 206 84 61 chr11 81484741 81484872 -67298600 + L1ME LINE L1 5612 5745 -376 1295 131 14 14 chr11 81484885 81485106 -67298366 + MLT2C1 LTR ERVL 10 230 -167 225 163 0 23 chr11 81485099 81485142 -67298330 + MLT2C1 LTR ERVL 356 397 0 * 864 48 0 0 chr11 81485674 81485777 -67297695 + AluY SINE Alu 2 104 -207 213 180 120 0 chr11 81486369 81486419 -67297053 + MIR SINE MIR 151 206 -56 255 261 104 3 chr11 81486495 81486614 -67296858 - MER5B DNA MER1_type 0 178 1 538 303 72 117 chr11 81486697 81487169 -67296303 - L2 LINE L2 -18 3254 2804 283 273 147 57 chr11 81487196 81487387 -67296085 - MIR SINE MIR -56 206 10 235 191 0 0 chr11 81487490 81487532 -67295940 - MIR SINE MIR -118 144 103 2414 71 0 0 chr11 81487547 81487842 -67295630 - AluY SINE Alu -16 295 1 288 253 25 13 chr11 81487867 81487946 -67295526 + MIR3 SINE MIR 82 161 -47 1695 171 52 0 chr11 81488193 81488480 -67294992 - AluJb SINE Alu -10 302 1 375 41 0 0 chr11 81489123 81489172 -67294300 + (CA)n Simple_repeat Simple_repeat 1 49 0 2081 144 37 3 chr11 81489198 81489552 -67293920 + MER47A DNA MER2_type 1 366 0 715 284 92 60 chr11 81489576 81489956 -67293516 - L2 LINE L2 0 3313 2922 1141 161 75 18 chr11 81489970 81490249 -67293223 + MER33 DNA MER1_type 2 296 -28 23 0 0 0 chr11 81490779 81490802 -67292670 + AT_rich Low_complexity Low_complexity 1 23 0 352 243 73 85 chr11 81490813 81490990 -67292482 - L1MC4 LINE L1 -42 8000 7826 377 262 92 57 chr11 81491337 81491478 -67291994 - L2 LINE L2 0 3272 3127 241 236 56 28 chr11 81491641 81491713 -67291759 - L2 LINE L2 -1 3271 3198 183 211 169 42 chr11 81492132 81492203 -67291269 - MER5A DNA MER1_type -109 80 1 234 0 0 0 chr11 81492288 81492314 -67291158 + (CATCC)n Simple_repeat Simple_repeat 1 26 0 551 213 39 16 chr11 81492314 81492441 -67291031 + L2 LINE L2 3182 3311 -2 228 333 54 36 chr11 81492982 81493093 -67290379 - L2 LINE L2 0 3272 3160 680 150 105 0 chr11 81493531 81493684 -67289788 + L1MA5 LINE L1 6132 6300 0 21 0 0 0 chr11 81493798 81493819 -67289653 + AT_rich Low_complexity Low_complexity 1 21 0 280 254 117 0 chr11 81493867 81494001 -67289471 + MIR SINE MIR 8 162 -62 511 333 36 22 chr11 81494116 81494341 -67289131 - MIR SINE MIR -15 247 20 334 318 72 62 chr11 81494535 81494730 -67288742 - MIR SINE MIR -64 198 2 657 200 119 0 chr11 81495014 81495174 -67288298 + MLT2B1 LTR ERVL 272 450 -70 1425 130 167 10 chr11 81495174 81495467 -67288005 - MER44D DNA MER2_type 0 609 1 843 59 0 0 chr11 81495816 81495917 -67287555 - AluY SINE Alu -217 101 1 801 180 79 0 chr11 81496207 81496346 -67287126 - FRAM SINE Alu -16 160 11 191 276 35 17 chr11 81496445 81496503 -67286969 - L2 LINE L2 -1 3312 3254 23 0 0 0 chr11 81496883 81496906 -67286566 + AT_rich Low_complexity Low_complexity 1 23 0 221 325 0 25 chr11 81497209 81497289 -67286183 - L2 LINE L2 -9 3304 3227 646 256 28 120 chr11 81497772 81498280 -67285192 + LTR67 LTR ERVL 87 547 -10 1285 177 18 5 chr11 81498286 81498506 -67284966 + MER58A DNA MER1_type 1 223 -1 360 0 0 0 chr11 81498735 81498775 -67284697 + (TG)n Simple_repeat Simple_repeat 2 41 0 284 252 195 25 chr11 81499080 81499239 -67284233 - MLT1J LTR MaLR 0 511 326 271 305 21 28 chr11 81499434 81499575 -67283897 - MLT1J LTR MaLR -345 166 27 2721 7 0 0 chr11 81499609 81499904 -67283568 - AluYa5 SINE Alu -16 295 1 199 225 62 88 chr11 81499977 81500057 -67283415 - MER5B DNA MER1_type -99 79 2 189 107 0 0 chr11 81500289 81500317 -67283155 + (TCTA)n Simple_repeat Simple_repeat 2 29 0 1794 95 8 0 chr11 81500736 81501000 -67282472 + L1MA2 LINE L1 5592 5857 -447 3605 83 23 2 chr11 81501000 81501509 -67281963 + L1MA2 LINE L1 5779 6304 0 450 345 7 0 chr11 81501570 81501715 -67281757 + MIR3 SINE MIR 51 196 -12 278 319 11 11 chr11 81502039 81502130 -67281342 - MIR SINE MIR -97 111 21 377 340 65 9 chr11 81502689 81502904 -67280568 + L3 LINE CR1 1116 1342 -235 286 318 87 48 chr11 81502925 81503051 -67280421 - L2 LINE L2 -1 3271 3141 385 306 45 0 chr11 81503103 81503237 -67280235 + L3 LINE CR1 1360 1499 -78 222 62 0 0 chr11 81503860 81503892 -67279580 + (TG)n Simple_repeat Simple_repeat 2 33 0 525 313 69 84 chr11 81504085 81504613 -67278859 - L2 LINE L2 -15 3257 2729 2171 89 4 4 chr11 81504613 81504917 -67278555 - AluSc SINE Alu 0 304 1 525 313 69 84 chr11 81504917 81505016 -67278456 - L2 LINE L2 -543 2729 2630 302 333 97 7 chr11 81505091 81505235 -67278237 + MER5B DNA MER1_type 1 157 -21 2152 119 0 0 chr11 81505467 81505761 -67277711 - AluSx SINE Alu -18 294 1 1568 138 25 36 chr11 81505885 81506161 -67277311 + AluJo SINE Alu 1 273 -39 261 0 0 0 chr11 81506167 81506196 -67277276 + (TC)n Simple_repeat Simple_repeat 2 30 0 868 146 34 34 chr11 81506260 81506438 -67277034 - MER58A DNA MER1_type 0 224 47 252 266 161 40 chr11 81506552 81506676 -67276796 - MIR SINE MIR -110 152 14 309 266 48 113 chr11 81507610 81507839 -67275633 + L3 LINE CR1 289 502 -1075 421 267 169 29 chr11 81508012 81508184 -67275288 + MIR SINE MIR 61 256 -6 195 312 140 11 chr11 81508223 81508316 -67275156 + L3 LINE CR1 693 797 -780 1947 147 0 17 chr11 81508680 81508979 -67274493 + AluJo SINE Alu 1 294 -18 2262 103 3 7 chr11 81508981 81509291 -67274181 + AluSq SINE Alu 1 309 -4 2121 136 30 9 chr11 81509619 81510080 -67273392 + L1MB8 LINE L1 5147 5616 -558 2363 151 28 40 chr11 81510083 81510581 -67272891 + L1MB8 LINE L1 5687 6178 0 2276 114 0 0 chr11 81510902 81511210 -67272262 - AluSx SINE Alu -4 308 1 335 328 86 9 chr11 81511290 81511406 -67272066 - L2 LINE L2 -11 3261 3137 254 337 70 0 chr11 81511438 81511524 -67271948 - L2 LINE L2 -37 3235 3144 235 259 0 17 chr11 81511643 81511701 -67271771 + MIR3 SINE MIR 147 203 -5 1623 174 133 21 chr11 81512069 81512489 -67270983 - MLT1C LTR MaLR 0 467 1 297 134 35 254 chr11 81513025 81513167 -67270305 + MER5B DNA MER1_type 34 144 -34 307 297 45 49 chr11 81513314 81513470 -67270002 + MIR SINE MIR 33 189 -61 232 248 193 37 chr11 81513751 81513860 -67269612 + MIR SINE MIR 20 145 -117 2104 81 63 7 chr11 81514112 81514397 -67269075 - AluSc SINE Alu -8 301 1 430 275 60 13 chr11 81514415 81514564 -67268908 - MIR SINE MIR -42 220 65 2113 200 38 58 chr11 81514683 81515233 -67268239 - MLT1F LTR MaLR 0 542 4 475 303 26 26 chr11 81515689 81515841 -67267631 + MIR3 SINE MIR 7 158 -50 239 192 0 51 chr11 81516533 81516611 -67266861 + G-rich Low_complexity Low_complexity 2 75 0 350 229 201 60 chr11 81516846 81517045 -67266427 + MIR SINE MIR 37 262 0 633 209 0 15 chr11 81517052 81517186 -67266286 - FLAM_A SINE Alu -1 132 1 328 347 59 6 chr11 81517877 81518047 -67265425 - L3 LINE CR1 -3 1574 1396 23 33 0 0 chr11 81518061 81518091 -67265381 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr11 81518540 81518564 -67264908 + AT_rich Low_complexity Low_complexity 1 24 0 510 304 6 41 chr11 81518564 81518735 -67264737 - MIR3 SINE MIR -3 205 41 2016 112 0 7 chr11 81518999 81519302 -67264170 + MSTA LTR MaLR 1 301 -127 258 361 41 10 chr11 81519492 81519589 -67263883 + MIR SINE MIR 25 124 -84 1006 225 0 22 chr11 81519707 81519929 -67263543 - MER20 DNA MER1_type -2 217 1 25 0 0 0 chr11 81519965 81519990 -67263482 + AT_rich Low_complexity Low_complexity 1 25 0 655 191 110 0 chr11 81519991 81520127 -67263345 - MIR SINE MIR -15 247 97 467 276 0 16 chr11 81520151 81520274 -67263198 - MIR SINE MIR -30 232 112 374 280 110 0 chr11 81520398 81520516 -67262956 - MIR SINE MIR -70 192 62 271 245 126 63 chr11 81520777 81520920 -67262552 + L2 LINE L2 3154 3305 -8 274 385 26 0 chr11 81520934 81521051 -67262421 - MIR3 SINE MIR -77 131 12 2413 62 0 47 chr11 81521632 81521952 -67261520 + AluY SINE Alu 1 305 -6 358 262 160 48 chr11 81521972 81522178 -67261294 - MIR SINE MIR -29 233 5 452 96 27 27 chr11 81522204 81522277 -67261195 - L1MB7 LINE L1 -9 6175 6103 265 179 54 0 chr11 81522318 81522374 -67261098 - L1MB7 LINE L1 -77 6107 6049 1542 179 0 65 chr11 81522379 81522524 -67260948 + AluJb SINE Alu 1 115 -197 1925 158 3 0 chr11 81522524 81522828 -67260644 + AluJb SINE Alu 1 305 -7 1542 179 0 65 chr11 81522828 81523006 -67260466 + AluJb SINE Alu 115 303 -9 3266 171 37 7 chr11 81523139 81523635 -67259837 - L1MB7 LINE L1 -362 5816 5336 2273 107 0 0 chr11 81523635 81523945 -67259527 - AluY SINE Alu -1 310 1 3266 171 37 7 chr11 81523945 81524553 -67258919 - L1MB7 LINE L1 -842 5336 4684 431 131 28 28 chr11 81524571 81524678 -67258794 - L1MB7 LINE L1 -1738 4408 4302 1714 42 0 23 chr11 81524783 81524997 -67258475 - AluY SINE Alu 0 311 103 4553 20 24 0 chr11 81524997 81525549 -67257923 - L1P LINE L1 -2849 3297 2733 851 59 0 0 chr11 81525549 81525650 -67257822 - AluY SINE Alu -217 101 1 198 348 68 17 chr11 81525861 81525979 -67257493 + L2 LINE L2 3185 3308 -5 374 266 66 87 chr11 81527566 81527852 -67255620 + HAL1 LINE L1 827 1106 -1401 344 339 93 69 chr11 81529271 81529764 -67253708 + L1MEc LINE L1 1685 2189 -4207 1490 156 4 4 chr11 81529767 81529998 -67253474 + AluJb SINE Alu 1 231 -81 579 177 0 26 chr11 81529999 81530112 -67253360 + AluJb SINE Alu 203 312 0 357 245 138 20 chr11 81530217 81530413 -67253059 + L1MEc LINE L1 2246 2464 -3751 37 0 0 0 chr11 81530892 81530929 -67252543 + AT_rich Low_complexity Low_complexity 1 37 0 226 297 0 0 chr11 81531171 81531235 -67252237 + L1ME4a LINE L1 5522 5585 -536 1233 132 0 0 chr11 81531246 81531420 -67252052 - AluJb SINE Alu -9 303 130 553 243 139 22 chr11 81531435 81531752 -67251720 + L1ME4a LINE L1 5599 5952 -169 196 354 0 0 chr11 81532840 81532905 -67250567 + L2 LINE L2 3200 3264 -8 204 232 18 0 chr11 81532932 81532988 -67250484 + (TTCA)n Simple_repeat Simple_repeat 4 60 0 456 240 108 8 chr11 81533101 81533230 -67250242 - MIR SINE MIR -73 189 48 281 258 103 41 chr11 81533719 81533816 -67249656 + L2 LINE L2 3121 3223 -49 207 279 0 15 chr11 81534374 81534442 -67249030 + A-rich Low_complexity Low_complexity 2 68 0 260 244 78 70 chr11 81534947 81535062 -67248410 + MIR SINE MIR 30 145 -63 300 317 37 50 chr11 81535273 81535434 -67248038 - MLT1J LTR MaLR -3 508 350 5244 205 17 104 chr11 81535444 81536481 -67246991 + L1M2 LINE L1 982 2108 -4741 2008 125 29 4 chr11 81536481 81536762 -67246710 + AluSx SINE Alu 1 288 -24 5244 205 17 104 chr11 81536762 81536833 -67246639 + L1M2 LINE L1 2108 2184 -4665 2030 133 0 30 chr11 81536833 81537133 -67246339 + AluSx SINE Alu 1 291 -21 5244 205 17 104 chr11 81537133 81537655 -67245817 + L1M2 LINE L1 2184 2471 -4378 2205 185 30 11 chr11 81537652 81538123 -67245349 + L1M2 LINE L1 3328 3807 -3041 * 5830 129 26 3 chr11 81538127 81539059 -67244413 + L1MA4A LINE L1 5345 6297 -6 2216 87 18 0 chr11 81539147 81539433 -67244039 + AluSp SINE Alu 2 292 -21 302 236 28 28 chr11 81539519 81539625 -67243847 + L1MEc LINE L1 2530 2635 -3580 3810 232 90 60 chr11 81539686 81540709 -67242763 + L1MEc LINE L1 2871 3958 -2257 1804 163 17 3 chr11 81540709 81541003 -67242469 + AluJb SINE Alu 1 298 -14 3810 232 90 60 chr11 81541003 81541520 -67241952 + L1MEc LINE L1 3958 4458 -1757 1072 172 52 26 chr11 81541519 81541751 -67241721 + L1MD3 LINE L1 7758 7995 0 * 2329 205 48 41 chr11 81541742 81542346 -67241126 + L1MEc LINE L1 4422 5029 -1186 198 0 0 0 chr11 81542357 81542379 -67241093 + (T)n Simple_repeat Simple_repeat 1 22 0 207 0 0 0 chr11 81542515 81542538 -67240934 + (A)n Simple_repeat Simple_repeat 1 23 0 1515 258 105 8 chr11 81542556 81543201 -67240271 + L1MEc LINE L1 1516 2184 -856 1253 144 68 4 chr11 81543209 81543445 -67240027 + MER96B DNA MER1_type? 31 281 -136 762 282 100 7 chr11 81544090 81544370 -67239102 - L2 LINE L2 -1189 2125 1820 627 211 177 97 chr11 81544454 81544951 -67238521 + MER34 LTR ERV1 4 540 -2 284 305 32 0 chr11 81544952 81545047 -67238425 - L2 LINE L2 -1511 1803 1706 3193 184 52 43 chr11 81545125 81545873 -67237599 - L1MD2 LINE L1 0 6359 5605 7400 121 68 3 chr11 81545874 81547026 -67236446 + Tigger3b DNA MER2_type 6 1231 0 1559 160 64 45 chr11 81547026 81547467 -67236005 - L1MD2 LINE L1 -754 5605 5158 272 338 99 28 chr11 81547675 81547817 -67235655 + L2 LINE L2 3117 3268 -4 325 282 17 60 chr11 81548389 81548506 -67234966 + MIR3 SINE MIR 11 122 -86 549 241 82 29 chr11 81549129 81549299 -67234173 + MIR SINE MIR 2 180 -82 2229 87 25 0 chr11 81550097 81550405 -67233067 + AluSc SINE Alu 2 316 0 275 396 58 7 chr11 81551206 81551360 -67232112 + L2 LINE L2 1103 1264 -2050 544 354 38 0 chr11 81551450 81551608 -67231864 + L2 LINE L2 3108 3271 -1 545 242 96 23 chr11 81551808 81552060 -67231412 + L1M4 LINE L1 3528 3797 -2349 2138 135 0 0 chr11 81552154 81552451 -67231021 + AluSx SINE Alu 1 297 -15 1082 304 86 44 chr11 81553159 81553797 -67229675 + ERVL LTR ERVL 993 1657 -4107 289 258 113 0 chr11 81553849 81553946 -67229526 + L2 LINE L2 2163 2270 -1044 2470 168 15 7 chr11 81553957 81554375 -67229097 + MSTB LTR MaLR 1 372 -3 2000 150 15 68 chr11 81554467 81554867 -67228605 + L1MA4 LINE L1 5911 6289 -11 202 264 167 35 chr11 81556015 81556159 -67227313 + L2 LINE L2 2924 3086 -186 328 293 47 9 chr11 81556568 81556674 -67226798 - MIR SINE MIR -63 145 36 183 291 163 12 chr11 81556901 81556987 -67226485 + L2 LINE L2 2626 2724 -590 1385 99 0 24 chr11 81557058 81557271 -67226201 - AluY SINE Alu 0 311 104 1515 186 57 3 chr11 81557272 81557626 -67225846 - L1P LINE L1 -2849 3297 2925 1968 121 12 75 chr11 81557816 81558147 -67225325 - AluSx SINE Alu -2 310 1 1000 176 41 37 chr11 81558167 81558209 -67225263 + L1M4 LINE L1 4980 5020 -1126 1950 158 3 0 chr11 81558209 81558507 -67224965 + AluJb SINE Alu 1 299 -13 1000 176 41 37 chr11 81558507 81558708 -67224764 + L1M4 LINE L1 5020 5224 -922 498 224 52 0 chr11 81558707 81558823 -67224649 + L1ME1 LINE L1 6043 6164 -2 * 2615 55 0 0 chr11 81558829 81559137 -67224335 + AluY SINE Alu 1 308 -3 28 0 0 0 chr11 81559168 81559196 -67224276 + AT_rich Low_complexity Low_complexity 1 28 0 28 29 0 0 chr11 81559303 81559338 -67224134 + AT_rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr11 81559397 81559417 -67224055 + (T)n Simple_repeat Simple_repeat 1 20 0 3243 111 19 17 chr11 81559417 81559886 -67223586 - LTR26B LTR ERV1 -61 470 1 312 316 10 0 chr11 81560283 81560381 -67223091 - LTR49-int LTR ERV1 -420 6381 6283 330 191 16 0 chr11 81560399 81560462 -67223010 - LTR29 LTR ERV1 -558 64 1 451 278 0 0 chr11 81560546 81560643 -67222829 - LTR49-int LTR ERV1 -158 6173 6077 418 286 16 87 chr11 81560680 81560736 -67222736 - LTR49-int LTR ERV1 -243 4693 4635 2344 95 0 0 chr11 81560736 81561032 -67222440 + AluSx SINE Alu 1 296 -16 418 286 16 87 chr11 81561032 81561160 -67222312 - LTR49-int LTR ERV1 -301 4635 4522 * 649 149 9 0 chr11 81561132 81561246 -67222226 - LTR49-int LTR ERV1 -562 5769 5655 1616 278 48 73 chr11 81561247 81561956 -67221516 - L1MEc LINE L1 -5064 1332 669 2025 90 47 7 chr11 81561956 81562235 -67221237 - AluSc SINE Alu -19 290 1 1616 278 48 73 chr11 81562235 81562818 -67220654 - L1MEc LINE L1 -5727 669 73 2016 128 20 3 chr11 81562993 81563289 -67220183 + AluSx SINE Alu 1 301 -11 373 296 96 61 chr11 81564241 81564471 -67219001 - L2 LINE L2 -7 3265 3028 378 0 0 0 chr11 81564678 81564720 -67218752 + (TG)n Simple_repeat Simple_repeat 2 43 0 183 235 0 0 chr11 81564724 81564775 -67218697 + GA-rich Low_complexity Low_complexity 3 53 0 324 341 31 61 chr11 81564921 81565150 -67218322 + LTR67 LTR ERVL 78 299 -258 2757 157 29 2 chr11 81565315 81565730 -67217742 - MSTB LTR MaLR 0 426 1 1102 126 5 47 chr11 81566374 81566565 -67216907 - AluSg/x SINE Alu -1 311 129 2206 125 21 34 chr11 81566676 81567087 -67216385 + L1MA8 LINE L1 4988 5397 -836 2088 85 54 10 chr11 81567087 81567381 -67216091 + AluSq SINE Alu 1 307 -6 2206 125 21 34 chr11 81567381 81567472 -67216000 + L1MA8 LINE L1 5397 5488 -745 2266 103 0 0 chr11 81567536 81567827 -67215645 - AluSx SINE Alu -21 291 1 5095 121 19 43 chr11 81567851 81568540 -67214932 + L1MA8 LINE L1 5468 6135 -156 1932 121 43 0 chr11 81568540 81568822 -67214650 - AluSx SINE Alu -18 294 1 5095 121 19 43 chr11 81568822 81568973 -67214499 + L1MA8 LINE L1 6135 6288 -3 694 233 71 49 chr11 81568973 81569219 -67214253 + L1ME3A LINE L1 5916 6168 -2 226 215 54 92 chr11 81569342 81569472 -67214000 + MIR3 SINE MIR 11 135 -73 305 181 42 0 chr11 81571691 81571763 -67211709 - MER81 DNA DNA -39 75 1 259 241 0 0 chr11 81573256 81573310 -67210162 + MIR SINE MIR 95 148 -114 225 356 67 10 chr11 81573362 81573466 -67210006 + MIR SINE MIR 102 211 -51 1872 203 128 18 chr11 81573815 81574268 -67209204 + MLT1D LTR MaLR 1 503 -2 331 271 35 42 chr11 81575632 81575776 -67207696 - MIR SINE MIR -59 203 61 211 410 103 10 chr11 81576352 81576652 -67206820 + L2 LINE L2 2918 3245 -27 300 272 129 39 chr11 81576917 81577073 -67206399 + MIR SINE MIR 17 181 -58 243 0 0 0 chr11 81577233 81577260 -67206212 + (CA)n Simple_repeat Simple_repeat 2 28 0 2774 120 23 39 chr11 81577361 81577976 -67205496 - L1 LINE L1 -1271 4875 4271 953 149 16 5 chr11 81577976 81578170 -67205302 - L1 LINE L1 -2200 3946 3751 207 0 0 0 chr11 81578171 81578194 -67205278 + (TTA)n Simple_repeat Simple_repeat 2 24 0 307 205 7 26 chr11 81578208 81578291 -67205181 - AluSp SINE Alu -113 190 122 502 133 0 0 chr11 81578299 81578389 -67205083 - L1 LINE L1 -2414 3732 3643 1310 261 107 22 chr11 81578390 81578805 -67204667 - L1ME3A LINE L1 -229 5941 5468 354 23 0 0 chr11 81578805 81578848 -67204624 + (TG)n Simple_repeat Simple_repeat 2 44 0 1310 261 107 22 chr11 81578848 81578975 -67204497 - L1ME3A LINE L1 -702 5468 5353 960 223 113 14 chr11 81578969 81579332 -67204140 - L1ME3A LINE L1 -1086 5060 4662 * 188 128 77 0 chr11 81579450 81579489 -67203983 - MIR SINE MIR -86 122 81 270 300 44 2 chr11 81579833 81579927 -67203545 - MIR SINE MIR -83 125 33 269 237 26 13 chr11 81580271 81580347 -67203125 + L2 LINE L2 2916 2992 -280 213 297 103 45 chr11 81581793 81581948 -67201524 + MIR3 SINE MIR 38 201 -7 212 182 0 45 chr11 81582137 81582181 -67201291 - MIR SINE MIR -91 117 80 313 281 83 0 chr11 81582476 81582572 -67200900 + MIR SINE MIR 38 141 -67 296 316 50 16 chr11 81582767 81582912 -67200560 - MIR3 SINE MIR -73 135 3 323 307 86 7 chr11 81583678 81583818 -67199654 + MIR SINE MIR 21 171 -91 248 334 42 10 chr11 81584222 81584387 -67199085 + MIR SINE MIR 29 197 -58 385 261 76 0 chr11 81584537 81584656 -67198816 + MIR SINE MIR 134 261 -1 215 337 33 0 chr11 81585373 81585465 -67198007 - MIR SINE MIR -80 128 34 184 261 98 11 chr11 81585862 81585954 -67197518 + MIR SINE MIR 34 133 -75 420 265 74 25 chr11 81586630 81586792 -67196680 + MIR SINE MIR 32 201 -61 1460 106 0 5 chr11 81588751 81588949 -67194523 + AluSg/x SINE Alu 81 277 -35 209 30 61 0 chr11 81588955 81588988 -67194484 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 739 214 208 0 chr11 81589003 81589195 -67194277 + MIR SINE MIR 28 259 -3 297 269 56 41 chr11 81589554 81589717 -67193755 + MIR SINE MIR 20 184 -56 357 260 65 24 chr11 81590497 81590620 -67192852 + MIR SINE MIR 63 190 -72 278 338 114 67 chr11 81590945 81591018 -67192454 - MIR SINE MIR -23 239 171 1867 158 13 0 chr11 81591018 81591322 -67192150 + AluJo SINE Alu 1 308 -4 278 338 114 67 chr11 81591322 81591458 -67192014 - MIR SINE MIR -91 171 20 1972 110 42 29 chr11 81591775 81592084 -67191388 + AluSq SINE Alu 1 313 0 337 326 46 0 chr11 81592087 81592258 -67191214 + MIR SINE MIR 51 230 -32 220 313 140 27 chr11 81593218 81593368 -67190104 + MIR3 SINE MIR 21 187 -21 274 330 9 43 chr11 81593786 81593901 -67189571 + MIR SINE MIR 117 227 -35 393 102 0 0 chr11 81595100 81595159 -67188313 + (TTCA)n Simple_repeat Simple_repeat 1 59 0 274 231 99 0 chr11 81595159 81595250 -67188222 - L2 LINE L2 -13 3259 3160 308 331 145 0 chr11 81595494 81595660 -67187812 - L3 LINE CR1 -488 1089 900 812 197 67 17 chr11 81595993 81596171 -67187301 + MER5A DNA MER1_type 1 187 -2 330 323 84 6 chr11 81596174 81596341 -67187131 - L2 LINE L2 -703 2611 2432 224 316 0 13 chr11 81598467 81598543 -67184929 - MIR3 SINE MIR -19 189 115 211 316 143 15 chr11 81599586 81599719 -67183753 + MIR3 SINE MIR 48 197 -11 190 238 95 24 chr11 81599842 81599926 -67183546 - MIR SINE MIR -63 145 56 369 289 126 31 chr11 81600509 81600668 -67182804 + MIR SINE MIR 61 234 -28 196 264 57 0 chr11 81601815 81601868 -67181604 + L3 LINE CR1 1511 1566 -11 202 188 297 16 chr11 81601965 81602029 -67181443 - MIR SINE MIR -70 192 111 283 265 72 0 chr11 81602178 81602261 -67181211 - L2 LINE L2 -38 3234 3146 2337 230 90 56 chr11 81602561 81603610 -67179862 - L1MC5 LINE L1 -70 7891 6808 254 315 63 31 chr11 81603947 81604074 -67179398 + MIR3 SINE MIR 15 145 -63 1480 103 124 17 chr11 81604106 81604340 -67179132 - AluSx SINE Alu -14 298 40 189 310 0 17 chr11 81605281 81605339 -67178133 + MIR SINE MIR 10 66 -196 520 204 15 23 chr11 81605376 81605508 -67177964 + MIR SINE MIR 72 202 -60 461 331 44 82 chr11 81605587 81605928 -67177544 - L2 LINE L2 0 3272 2945 260 313 116 0 chr11 81606332 81606479 -67176993 - MIR3 SINE MIR -3 205 42 197 357 171 16 chr11 81606981 81607110 -67176362 - MIR SINE MIR -91 171 23 244 290 16 0 chr11 81607296 81607358 -67176114 + L2 LINE L2 3200 3262 -10 229 300 0 0 chr11 81607557 81607617 -67175855 + A-rich Low_complexity Low_complexity 4 63 0 912 213 33 0 chr11 81607773 81607956 -67175516 - L1MB4 LINE L1 -2 6178 5990 258 383 35 9 chr11 81608060 81608175 -67175297 + MIR SINE MIR 30 147 -61 526 162 126 0 chr11 81608766 81608877 -67174595 + MER63 DNA MER1_type 3 753 -83 1280 92 6 0 chr11 81608904 81609077 -67174395 + AluSp SINE Alu 135 308 -5 438 253 38 44 chr11 81610353 81610511 -67172961 + MIR3 SINE MIR 22 178 -30 206 261 54 45 chr11 81610751 81610862 -67172610 - L2 LINE L2 -215 3057 2946 1865 168 7 0 chr11 81610946 81611243 -67172229 + AluJo SINE Alu 1 299 -13 2144 134 0 0 chr11 81611943 81612256 -67171216 - AluSq SINE Alu 0 313 1 3447 155 22 90 chr11 81613321 81613791 -67169681 - LTR8 LTR ERV1 0 691 289 1905 165 0 0 chr11 81613791 81614094 -67169378 - AluSx SINE Alu -9 303 1 3447 155 22 90 chr11 81614094 81614365 -67169107 - LTR8 LTR ERV1 -402 289 1 754 141 0 0 chr11 81614757 81614885 -67168587 + L1MB5 LINE L1 5564 5691 -493 1238 167 0 24 chr11 81614887 81615097 -67168375 + AluJb SINE Alu 86 290 -22 1688 132 37 60 chr11 81615098 81615301 -67168171 + L1MB5 LINE L1 5684 5890 -284 1543 167 4 0 chr11 81615301 81615547 -67167925 + AluJo SINE Alu 36 282 -30 186 43 0 0 chr11 81615552 81615575 -67167897 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 1688 132 37 60 chr11 81615575 81615745 -67167727 + L1MB5 LINE L1 5894 6054 -120 641 108 9 0 chr11 81615914 81616025 -67167447 + L1MB7 LINE L1 6056 6167 -17 1599 253 30 31 chr11 81616033 81616790 -67166682 - L1MC4a LINE L1 -1692 6116 5306 286 95 0 0 chr11 81616794 81616836 -67166636 + MLT1A2 LTR MaLR 333 374 0 658 318 46 25 chr11 81616838 81616898 -67166574 - L1MC4a LINE L1 -1117 5029 4972 2474 143 53 7 chr11 81616898 81617311 -67166161 + MSTB1 LTR MaLR 1 432 0 658 318 46 25 chr11 81617311 81617813 -67165659 - L1MC4a LINE L1 -1174 4972 4455 2006 127 24 0 chr11 81617817 81618109 -67165363 + AluSx SINE Alu 1 299 -13 2126 74 7 0 chr11 81618209 81618478 -67164994 - AluSp SINE Alu -40 273 3 249 318 14 77 chr11 81619514 81619734 -67163738 - MIR SINE MIR -6 256 51 1484 158 41 15 chr11 81619968 81620234 -67163238 - AluJo SINE Alu -34 278 6 785 149 0 60 chr11 81621560 81621694 -67161778 - FLAM_C SINE Alu -7 126 1 2280 65 3 56 chr11 81621917 81622239 -67161233 + AluY SINE Alu 1 305 -6 267 31 0 0 chr11 81622699 81622731 -67160741 + (TCCC)n Simple_repeat Simple_repeat 4 35 0 212 323 126 0 chr11 81623685 81623812 -67159660 + MIR SINE MIR 60 202 -60 1213 139 110 19 chr11 81623940 81624296 -67159176 - L1MA7 LINE L1 -2 6289 5938 2070 100 38 3 chr11 81624296 81624586 -67158886 - AluSc SINE Alu -9 300 1 1213 139 110 19 chr11 81624586 81624605 -67158867 - L1MA7 LINE L1 -353 5938 5922 200 302 12 12 chr11 81624792 81624878 -67158594 + CT-rich Low_complexity Low_complexity 1 86 0 222 156 38 73 chr11 81625241 81625318 -67158154 - MIR SINE MIR -62 146 84 262 324 34 12 chr11 81625710 81625844 -67157628 + MIR3 SINE MIR 51 182 -54 245 356 0 34 chr11 81625857 81625975 -67157497 - MIR3 SINE MIR -52 156 43 273 295 70 65 chr11 81626096 81626341 -67157131 - MIR SINE MIR -14 248 4 1752 192 0 0 chr11 81627359 81627661 -67155811 - AluJo SINE Alu -10 302 1 1251 165 22 38 chr11 81627664 81627931 -67155541 - L1MB8 LINE L1 -3 6175 5913 303 350 78 28 chr11 81628415 81628632 -67154840 - MIR SINE MIR -24 238 11 412 293 106 25 chr11 81628818 81629016 -67154456 + MIR SINE MIR 34 247 -15 263 267 68 68 chr11 81629543 81629719 -67153753 - L2 LINE L2 -191 3081 2906 202 200 0 0 chr11 81629838 81629878 -67153594 + (CCCCAA)n Simple_repeat Simple_repeat 1 40 0 353 331 68 0 chr11 81630632 81630780 -67152692 - MIR3 SINE MIR -1 207 50 445 211 19 0 chr11 81631355 81631459 -67152013 + MIR SINE MIR 24 129 -79 309 284 0 14 chr11 81632876 81632950 -67150522 + MIR SINE MIR 81 153 -109 240 35 0 0 chr11 81633037 81633066 -67150406 + (TA)n Simple_repeat Simple_repeat 1 29 0 261 380 51 0 chr11 81633725 81633862 -67149610 - L2 LINE L2 0 3313 3170 182 266 25 63 chr11 81634196 81634275 -67149197 + MIR SINE MIR 186 261 -1 337 294 35 42 chr11 81636255 81636398 -67147074 + MIR SINE MIR 65 206 -56 645 304 82 73 chr11 81636934 81637375 -67146097 - L2 LINE L2 -21 3251 2807 25 0 0 0 chr11 81637384 81637409 -67146063 + GC_rich Low_complexity Low_complexity 1 25 0 339 305 46 20 chr11 81637630 81637781 -67145691 + MIR3 SINE MIR 33 187 -21 228 235 98 39 chr11 81638322 81638424 -67145048 - L2 LINE L2 -309 2963 2856 186 143 0 0 chr11 81638828 81638863 -67144609 + (TG)n Simple_repeat Simple_repeat 1 35 0 491 298 60 12 chr11 81639313 81639481 -67143991 + MIR SINE MIR 49 224 -38 2094 112 0 0 chr11 81639890 81640207 -67143265 - AluSc SINE Alu 0 319 3 283 296 74 9 chr11 81640209 81640317 -67143155 - MIR SINE MIR -99 163 49 181 269 56 46 chr11 81640443 81640551 -67142921 - L2 LINE L2 -94 3178 3070 1553 234 46 74 chr11 81640861 81641359 -67142113 - L1M4c LINE L1 -3723 2523 2013 2016 130 3 3 chr11 81641359 81641652 -67141820 - AluSq SINE Alu -20 293 1 1553 234 46 74 chr11 81641652 81641882 -67141590 - L1M4c LINE L1 -4233 2013 1835 981 229 0 0 chr11 81641882 81642052 -67141420 - FAM SINE Alu -4 171 2 1553 234 46 74 chr11 81642052 81642154 -67141318 - L1M4c LINE L1 -4411 1835 1732 2130 107 7 7 chr11 81642202 81642502 -67140970 - AluSx SINE Alu -12 300 1 195 292 83 14 chr11 81643077 81643149 -67140323 + MIR SINE MIR 116 192 -70 500 223 18 18 chr11 81643358 81643470 -67140002 - MIR SINE MIR -55 153 42 363 253 25 0 chr11 81644006 81644111 -67139361 + MIR SINE MIR 57 164 -62 268 220 209 0 chr11 81644408 81644499 -67138973 - L2 LINE L2 -12 3260 3151 438 228 0 20 chr11 81644612 81644713 -67138759 + MIR SINE MIR 20 118 -90 227 244 37 0 chr11 81644798 81644880 -67138592 - L2 LINE L2 -46 3226 3142 180 311 54 40 chr11 81644958 81645032 -67138440 + MIR SINE MIR 174 248 -14 1251 159 99 14 chr11 81645180 81645463 -67138009 + MER7A DNA MER2_type 42 346 0 340 261 210 0 chr11 81645510 81645629 -67137843 - MIR3 SINE MIR -35 173 30 676 297 216 15 chr11 81645791 81646261 -67137211 + L2 LINE L2 2764 3305 -8 187 225 0 0 chr11 81646694 81646734 -67136738 + MIR SINE MIR 109 148 -114 575 269 64 0 chr11 81647375 81647546 -67135926 + MIR SINE MIR 31 212 -50 407 248 51 8 chr11 81648263 81648380 -67135092 - MIR3 SINE MIR -75 133 12 210 339 85 37 chr11 81648829 81649018 -67134454 + L2 LINE L2 3074 3271 -1 250 314 109 26 chr11 81649331 81649487 -67133985 + MIR SINE MIR 79 247 -15 352 339 0 24 chr11 81649554 81649681 -67133791 - MIR SINE MIR -75 187 64 314 293 75 0 chr11 81650034 81650167 -67133305 + MIR3 SINE MIR 51 193 -15 475 304 40 40 chr11 81651346 81651599 -67131873 + L2 LINE L2 2848 3100 -213 213 39 0 0 chr11 81651642 81651668 -67131804 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 549 213 0 0 chr11 81652236 81652330 -67131142 - AluJ/FLAM SINE Alu -218 94 1 434 261 71 44 chr11 81652330 81652556 -67130916 - L1M4 LINE L1 -2059 4087 3856 550 170 90 4 chr11 81652584 81652723 -67130749 + MLT1C LTR MaLR 353 463 -4 939 84 0 30 chr11 81652760 81652891 -67130581 + AluSp/q SINE Alu 168 294 -19 269 295 36 36 chr11 81653542 81653654 -67129818 + L3 LINE CR1 1409 1520 -57 369 268 181 0 chr11 81653679 81653806 -67129666 + MIR SINE MIR 34 183 -79 274 216 119 82 chr11 81653999 81654133 -67129339 + MIR3 SINE MIR 60 198 -10 199 178 111 0 chr11 81654172 81654217 -67129255 + MIR3 SINE MIR 113 162 -46 573 312 30 25 chr11 81654221 81654420 -67129052 - MIR SINE MIR 0 262 63 369 211 123 26 chr11 81654678 81654792 -67128680 - MIR SINE MIR -63 145 21 3111 174 107 8 chr11 81655314 81655976 -67127496 + LTR39 LTR ERV1 56 783 0 210 216 0 20 chr11 81656198 81656249 -67127223 - MIR SINE MIR -96 166 117 1732 155 63 17 chr11 81656594 81657066 -67126406 - Charlie1 DNA MER1_type -1 2760 1 182 217 179 57 chr11 81659266 81659372 -67124100 + MIR3 SINE MIR 12 130 -78 385 284 64 59 chr11 81659922 81660126 -67123346 + MIR SINE MIR 21 225 -37 200 200 0 0 chr11 81660195 81660235 -67123237 + (TAGA)n Simple_repeat Simple_repeat 1 40 0 271 247 25 37 chr11 81660668 81660749 -67122723 - L2 LINE L2 -1 3271 3192 289 284 10 20 chr11 81660822 81660924 -67122548 - L2 LINE L2 -227 3045 2945 418 266 70 20 chr11 81660975 81661219 -67122253 - L2 LINE L2 -463 2851 2596 5493 73 26 6 chr11 81661321 81662470 -67121002 - SVA Other Other -955 1344 57 608 36 0 12 chr11 81662470 81662554 -67120918 + (GGGAGA)n Simple_repeat Simple_repeat 1 83 0 512 132 0 33 chr11 81662592 81662683 -67120789 - AluSp/q SINE Alu -7 306 219 340 188 0 0 chr11 81662783 81662852 -67120620 + MER41B LTR ERV1 567 635 0 194 295 42 42 chr11 81664386 81664481 -67118991 + MIR SINE MIR 25 119 -143 181 354 38 0 chr11 81664617 81664696 -67118776 + L2 LINE L2 3096 3177 -95 2364 77 0 0 chr11 81665037 81665336 -67118136 + AluY SINE Alu 1 299 -12 180 397 0 0 chr11 81665400 81665463 -67118009 - L2 LINE L2 -5 3267 3205 631 209 34 0 chr11 81665602 81665750 -67117722 - L1M4c LINE L1 -4782 1602 1450 183 313 0 0 chr11 81665906 81665973 -67117499 + L2 LINE L2 2920 2986 -327 839 272 37 0 chr11 81666061 81666278 -67117194 - MIR SINE MIR -37 225 1 224 294 188 41 chr11 81666278 81666437 -67117035 + L2 LINE L2 3084 3267 -5 242 318 34 0 chr11 81666869 81666957 -67116515 + GA-rich Low_complexity Low_complexity 4 94 0 1024 173 17 0 chr11 81667245 81667424 -67116048 + AluSg/x SINE Alu 117 298 -14 287 276 95 0 chr11 81667433 81667538 -67115934 - MIR SINE MIR -30 232 118 190 233 83 75 chr11 81668690 81668810 -67114662 - L3 LINE CR1 -360 1217 1097 276 333 70 19 chr11 81669554 81669710 -67113762 - L3 LINE CR1 -513 1064 901 196 191 119 0 chr11 81672163 81672205 -67111267 - L2 LINE L2 -1 3312 3266 227 281 214 0 chr11 81672534 81672623 -67110849 - L2 LINE L2 -40 3273 3166 294 254 28 0 chr11 81673082 81673153 -67110319 + MIR SINE MIR 81 153 -55 460 275 53 41 chr11 81674007 81674178 -67109294 - L2 LINE L2 -167 3105 2933 383 347 47 0 chr11 81675196 81675346 -67108126 + MIR3 SINE MIR 42 198 -10 240 248 95 67 chr11 81675677 81675782 -67107690 + MIR SINE MIR 67 174 -88 276 326 10 10 chr11 81675959 81676057 -67107415 - MIR3 SINE MIR -1 207 110 2635 157 38 34 chr11 81676417 81676690 -67106782 - L1MB4 LINE L1 -1 6179 5902 1636 168 90 12 chr11 81676690 81677011 -67106461 - MER7A DNA MER2_type -2 344 1 2635 157 38 34 chr11 81677011 81677267 -67106205 - L1MB4 LINE L1 -278 5902 5648 190 254 0 161 chr11 81677283 81677413 -67106059 - MIR SINE MIR -67 141 33 32 0 0 0 chr11 81677735 81677767 -67105705 + AT_rich Low_complexity Low_complexity 1 32 0 255 280 13 13 chr11 81678019 81678094 -67105378 - L2 LINE L2 -5 3308 3234 336 248 143 0 chr11 81678114 81678219 -67105253 - MIR3 SINE MIR 0 208 89 248 333 56 24 chr11 81678365 81678491 -67104981 - MIR SINE MIR -55 153 24 386 257 43 71 chr11 81678807 81678947 -67104525 + MIR SINE MIR 47 182 -80 363 314 16 8 chr11 81679210 81679331 -67104141 + MIR3 SINE MIR 70 191 -17 187 282 45 100 chr11 81679637 81679747 -67103725 - MIR3 SINE MIR -24 184 81 340 259 28 9 chr11 81680530 81680638 -67102834 - MIR SINE MIR -64 144 35 320 247 56 49 chr11 81680667 81680860 -67102612 - MIR SINE MIR -36 226 35 605 263 61 47 chr11 81681716 81681848 -67101624 - MIR SINE MIR -11 251 113 1770 168 0 23 chr11 81681848 81682157 -67101315 + AluJo SINE Alu 1 302 -10 605 263 61 47 chr11 81682157 81682237 -67101235 - MIR SINE MIR -149 113 36 34 0 0 0 chr11 81682297 81682331 -67101141 + AT_rich Low_complexity Low_complexity 1 34 0 1097 265 70 75 chr11 81682992 81683129 -67100343 - L2 LINE L2 -13 3300 3164 1769 189 17 0 chr11 81683129 81683431 -67100041 + AluJb SINE Alu 1 307 -5 1097 265 70 75 chr11 81683431 81683907 -67099565 - L2 LINE L2 -149 3164 2670 716 275 68 4 chr11 81684052 81684303 -67099169 - L2 LINE L2 -639 2675 2409 265 304 38 0 chr11 81684375 81684454 -67099018 - L2 LINE L2 -55 3217 3136 251 114 23 0 chr11 81684570 81684614 -67098858 + (TG)n Simple_repeat Simple_repeat 2 46 0 445 331 69 12 chr11 81685511 81685671 -67097801 - MIR SINE MIR -59 203 35 205 102 204 0 chr11 81685851 81685900 -67097572 - L2 LINE L2 -185 3087 3029 410 312 39 19 chr11 81686401 81686555 -67096917 + MIR SINE MIR 20 176 -86 185 350 40 10 chr11 81686640 81686740 -67096732 + L2 LINE L2 2992 3094 -178 320 368 29 12 chr11 81686743 81686914 -67096558 - MIR SINE MIR -10 252 79 258 329 109 5 chr11 81687279 81687489 -67095983 + L2 LINE L2 2578 2809 -505 402 269 119 37 chr11 81687550 81687684 -67095788 - MER91B DNA MER1_type -38 152 8 182 321 161 36 chr11 81687691 81687884 -67095588 + L2 LINE L2 2875 3091 -181 273 298 99 15 chr11 81688493 81688624 -67094848 - MIR3 SINE MIR -16 192 51 199 108 27 0 chr11 81689104 81689141 -67094331 + MIR SINE MIR 108 145 -117 522 294 112 10 chr11 81689686 81689883 -67093589 - MIR SINE MIR -21 241 25 186 43 0 0 chr11 81690013 81690036 -67093436 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 365 317 50 60 chr11 81690041 81690240 -67093232 + L2 LINE L2 3076 3272 0 262 341 47 23 chr11 81690360 81690489 -67092983 - L2 LINE L2 -604 2710 2579 635 196 7 0 chr11 81691428 81691566 -67091906 + (TCCA)n Simple_repeat Simple_repeat 2 140 0 218 187 13 6 chr11 81691890 81691965 -67091507 + MIR3 SINE MIR 38 156 -52 21 36 0 0 chr11 81691982 81692010 -67091462 + AT_rich Low_complexity Low_complexity 1 28 0 187 127 16 175 chr11 81692015 81692078 -67091394 - L2 LINE L2 0 3313 3261 * 531 210 20 44 chr11 81692068 81692234 -67091238 - MIR SINE MIR -65 143 17 1261 195 104 17 chr11 81694010 81694308 -67089164 + MER33 DNA MER1_type 1 324 0 1104 115 0 0 chr11 81694449 81694605 -67088867 - FRAM SINE Alu 0 40 1 310 265 60 68 chr11 81697476 81697593 -67085879 + MIR SINE MIR 37 152 -110 5921 111 56 4 chr11 81697595 81698599 -67084873 - Tigger1 DNA MER2_type 0 2418 1363 2203 104 3 0 chr11 81698600 81698897 -67084575 - AluSg SINE Alu -12 298 1 6721 135 28 2 chr11 81698904 81700049 -67083423 - Tigger1 DNA MER2_type -1243 1175 1 238 265 98 39 chr11 81700050 81700152 -67083320 + MIR SINE MIR 154 261 -1 308 186 35 15 chr11 81700481 81700560 -67082912 - MIR SINE MIR -55 153 85 232 322 8 51 chr11 81700756 81700874 -67082598 + MIR SINE MIR 36 148 -60 325 297 30 30 chr11 81701308 81701409 -67082063 - MIR SINE MIR 0 262 162 192 273 0 0 chr11 81702822 81702888 -67080584 + (TG)n Simple_repeat Simple_repeat 2 67 0 2293 106 0 0 chr11 81703717 81704019 -67079453 + AluSg SINE Alu 1 302 -8 616 200 0 8 chr11 81705481 81705746 -67077726 + (TGG)n Simple_repeat Simple_repeat 1 263 0 352 336 76 0 chr11 81707861 81707980 -67075492 - L2 LINE L2 0 3272 3145 1661 184 27 85 chr11 81708089 81708395 -67075077 - MLT1B LTR MaLR -2 388 111 2179 88 10 3 chr11 81708395 81708690 -67074782 + AluSq SINE Alu 1 297 -16 1661 184 27 85 chr11 81708690 81708795 -67074677 - MLT1B LTR MaLR -279 111 1 396 273 66 45 chr11 81708810 81709008 -67074464 - L1MC4 LINE L1 -1 8041 7840 227 143 24 0 chr11 81710425 81710467 -67073005 - L2 LINE L2 -21 3251 3209 245 365 135 0 chr11 81710471 81710619 -67072853 - MIR3 SINE MIR -3 205 38 265 274 60 36 chr11 81710670 81710754 -67072718 + MIR SINE MIR 109 194 -68 540 269 217 0 chr11 81711486 81711698 -67071774 - L2 LINE L2 -42 3230 2973 2244 127 74 43 chr11 81712183 81712295 -67071177 - MSTB1 LTR MaLR 0 432 325 1874 156 6 13 chr11 81712295 81712609 -67070863 + AluJb SINE Alu 1 312 0 2244 127 74 43 chr11 81712609 81712915 -67070557 - MSTB1 LTR MaLR -107 325 1 230 307 57 42 chr11 81713351 81713606 -67069866 - L2 LINE L2 -314 2958 2713 222 292 34 0 chr11 81714517 81714606 -67068866 - MIR SINE MIR -67 141 50 522 240 34 34 chr11 81715205 81715380 -67068092 - L2 LINE L2 -199 3073 2899 371 279 36 48 chr11 81716485 81716650 -67066822 + L2 LINE L2 2898 3060 -212 238 200 100 29 chr11 81716871 81716941 -67066531 - MER5C DNA MER1_type -248 76 2 346 239 83 9 chr11 81717598 81717707 -67065765 - MIR SINE MIR -118 144 28 480 266 114 15 chr11 81719400 81719580 -67063892 - MIR SINE MIR -62 146 3 437 278 138 27 chr11 81720850 81721064 -67062408 - MIR SINE MIR -16 246 2 417 332 66 9 chr11 81721255 81721481 -67061991 + L2 LINE L2 2450 2688 -626 210 208 0 0 chr11 81721998 81722046 -67061426 + (TGGA)n Simple_repeat Simple_repeat 1 48 0 193 253 147 27 chr11 81722446 81722521 -67060951 + MIR SINE MIR 119 202 -60 222 350 129 37 chr11 81723734 81724028 -67059444 - L2 LINE L2 -107 3165 2845 254 223 165 10 chr11 81724210 81724313 -67059159 - L2 LINE L2 -1509 1805 1687 183 274 137 0 chr11 81724807 81724902 -67058570 + L2 LINE L2 1868 1975 -1339 180 0 0 0 chr11 81727409 81727429 -67056043 + (ATTG)n Simple_repeat Simple_repeat 3 22 0 222 62 0 0 chr11 81727836 81727868 -67055604 + (CA)n Simple_repeat Simple_repeat 2 33 0 374 306 45 0 chr11 81728491 81728625 -67054847 - L3 LINE CR1 -78 1499 1360 280 318 87 48 chr11 81728677 81728803 -67054669 + L2 LINE L2 3141 3271 -1 341 344 65 9 chr11 81728824 81729039 -67054433 - L3 LINE CR1 -235 1342 1116 275 319 11 11 chr11 81729598 81729689 -67053783 + MIR SINE MIR 21 111 -97 444 345 7 0 chr11 81730013 81730158 -67053314 - MIR3 SINE MIR -12 196 51 3919 82 23 2 chr11 81730219 81730734 -67052738 - L1MA2 LINE L1 0 6304 5779 1881 97 8 0 chr11 81730734 81730992 -67052480 - L1MA2 LINE L1 -453 5851 5592 189 107 0 0 chr11 81731411 81731439 -67052033 + (TAGA)n Simple_repeat Simple_repeat 2 29 0 198 225 62 88 chr11 81731671 81731751 -67051721 + MER5B DNA MER1_type 2 79 -99 2895 10 0 0 chr11 81731824 81732135 -67051337 + AluYa5 SINE Alu 1 311 0 276 303 0 0 chr11 81732189 81732278 -67051194 + L1MC4 LINE L1 7923 8011 -31 350 281 73 0 chr11 81732300 81732382 -67051090 - MER5B DNA MER1_type -37 141 54 228 259 185 0 chr11 81732656 81732764 -67050708 + L3b LINE CR1 1189 1316 -267 222 323 11 21 chr11 81733051 81733144 -67050328 - L2 LINE L2 -2 3311 3220 198 344 22 11 chr11 81733139 81733229 -67050243 - MIR SINE MIR -73 135 45 * 527 284 59 0 chr11 81733636 81733805 -67049667 + MIR SINE MIR 81 259 -3 404 258 55 68 chr11 81733830 81733993 -67049479 + L2 LINE L2 2888 3048 -224 186 393 107 8 chr11 81734105 81734227 -67049245 + L2 LINE L2 3133 3266 -6 185 283 100 0 chr11 81734304 81734364 -67049108 - MIR SINE MIR -57 151 86 241 341 0 49 chr11 81734854 81734977 -67048495 - L3 LINE CR1 -13 1564 1448 1038 310 218 24 chr11 81735127 81736043 -67047429 + L2 LINE L2 164 901 -2413 2311 164 36 8 chr11 81736043 81736428 -67047044 + MSTD LTR MaLR 1 396 0 1038 310 218 24 chr11 81736428 81736511 -67046961 + L2 LINE L2 901 967 -2347 2380 98 3 0 chr11 81736511 81736816 -67046656 - AluSx SINE Alu -6 306 1 1038 310 218 24 chr11 81736816 81737082 -67046390 + L2 LINE L2 967 1676 -1638 * 1455 306 101 11 chr11 81737061 81737851 -67045621 - L2 LINE L2 0 3313 2438 372 71 0 0 chr11 81737903 81737959 -67045513 + (CA)n Simple_repeat Simple_repeat 2 57 0 1410 272 98 28 chr11 81737962 81738576 -67044896 + L2 LINE L2 1713 2369 -945 292 256 89 83 chr11 81738571 81738739 -67044733 + L2 LINE L2 3121 3289 -24 * 1768 163 3 17 chr11 81738739 81739039 -67044433 + AluJb SINE Alu 1 296 -16 250 354 12 0 chr11 81739073 81739155 -67044317 - L2 LINE L2 -86 3186 3104 291 312 183 5 chr11 81739260 81739446 -67044026 - MIR SINE MIR -16 246 28 198 289 0 0 chr11 81739639 81739684 -67043788 + L2 LINE L2 3142 3186 -86 248 202 119 36 chr11 81739819 81739903 -67043569 - MIR SINE MIR -40 222 132 214 262 0 0 chr11 81740295 81740337 -67043135 + MIR SINE MIR 42 83 -125 223 327 39 19 chr11 81740431 81740535 -67042937 + L2 LINE L2 3208 3313 0 264 167 0 0 chr11 81740562 81740610 -67042862 + (CATA)n Simple_repeat Simple_repeat 3 50 0 363 200 0 0 chr11 81740618 81740683 -67042789 + Alu SINE Alu 237 301 -1 536 183 21 10 chr11 81740683 81740778 -67042694 + L1M1 LINE L1 5481 5573 -605 360 0 0 0 chr11 81740778 81740818 -67042654 + (CA)n Simple_repeat Simple_repeat 2 41 0 536 183 21 10 chr11 81740818 81740834 -67042638 + L1M1 LINE L1 5573 5587 -591 3976 151 24 27 chr11 81740926 81741230 -67042242 + L1MA4 LINE L1 5185 5488 -812 1680 176 13 33 chr11 81741230 81741537 -67041935 + AluJo SINE Alu 1 301 -11 3976 151 24 27 chr11 81741537 81742069 -67041403 + L1MA4 LINE L1 5488 6020 -280 330 164 0 0 chr11 81742068 81742129 -67041343 + L1MB3 LINE L1 6091 6151 -32 * 206 316 34 17 chr11 81742885 81743002 -67040470 + GA-rich Low_complexity Low_complexity 3 121 0 1655 149 21 7 chr11 81744689 81744971 -67038501 - AluJo SINE Alu -26 286 1 318 250 208 0 chr11 81744975 81745095 -67038377 - MIR SINE MIR -8 254 110 199 350 0 0 chr11 81745108 81745168 -67038304 - L2 LINE L2 -6 3307 3248 302 312 32 8 chr11 81745178 81745303 -67038169 - MER20B DNA MER1_type -640 143 16 458 360 84 38 chr11 81745332 81745699 -67037773 - L2 LINE L2 -480 2834 2451 1826 83 8 4 chr11 81745719 81745961 -67037511 + AluSq SINE Alu 71 313 0 237 132 0 0 chr11 81745961 81745999 -67037473 + (GGAA)n Simple_repeat Simple_repeat 3 40 0 392 279 214 54 chr11 81746210 81746490 -67036982 - L3 LINE CR1 -82 1495 1171 219 186 214 0 chr11 81746475 81746545 -67036927 - L2 LINE L2 -1 3312 3228 * 404 250 60 60 chr11 81746584 81746700 -67036772 - MER5B DNA MER1_type -2 176 61 2388 179 49 22 chr11 81746746 81747586 -67035886 + L1MC2 LINE L1 4738 5605 -739 6669 107 42 48 chr11 81747586 81748207 -67035265 - Tigger3b DNA MER2_type -1797 1231 608 1944 155 0 7 chr11 81748207 81748537 -67034935 - AluSx SINE Alu 0 312 4 6669 107 42 48 chr11 81748537 81748933 -67034539 - Tigger3b DNA MER2_type -2420 608 218 2402 78 0 0 chr11 81748933 81749228 -67034244 + AluY SINE Alu 1 295 -16 6669 107 42 48 chr11 81749228 81749338 -67034134 - Tigger3b DNA MER2_type -2810 218 109 3565 150 73 18 chr11 81749383 81749983 -67033489 + L1MC2 LINE L1 5629 6271 -73 2456 89 0 3 chr11 81749983 81750297 -67033175 - AluSq SINE Alu 0 313 1 3565 150 73 18 chr11 81750297 81750364 -67033108 + L1MC2 LINE L1 6271 6333 -11 671 144 138 11 chr11 81750364 81750545 -67032927 - MER5C DNA MER1_type -90 234 31 1067 298 100 12 chr11 81750567 81750997 -67032475 - L3 LINE CR1 -436 1141 674 189 343 83 19 chr11 81751001 81751109 -67032363 - L2 LINE L2 -15 3257 3143 251 226 26 9 chr11 81751692 81751762 -67031710 + Charlie8 DNA MER1_type 1369 1417 -1000 218 370 83 21 chr11 81752330 81752522 -67030950 - L2 LINE L2 -178 3094 2891 272 287 106 11 chr11 81752559 81752653 -67030819 - L2 LINE L2 -2 3270 3168 893 228 87 8 chr11 81752706 81752960 -67030512 + L2 LINE L2 2332 2605 -709 1087 195 26 0 chr11 81753022 81753212 -67030260 + MER20 DNA MER1_type 25 219 0 1069 261 67 69 chr11 81753258 81753872 -67029600 + L2 LINE L2 2686 3295 -18 180 77 0 0 chr11 81753877 81753903 -67029569 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 265 332 87 53 chr11 81754226 81754434 -67029038 + L2 LINE L2 2998 3212 -60 1951 113 28 10 chr11 81754539 81754830 -67028642 + AluSx SINE Alu 1 296 -16 298 312 21 28 chr11 81754864 81755005 -67028467 + MLT1J LTR MaLR 27 166 -345 342 230 157 121 chr11 81755111 81755359 -67028113 + MLT1L LTR MaLR 359 615 0 360 0 0 0 chr11 81755664 81755704 -67027768 + (CA)n Simple_repeat Simple_repeat 2 41 0 1384 177 18 5 chr11 81755933 81756153 -67027319 - MER58A DNA MER1_type -1 223 1 795 258 27 119 chr11 81756159 81756671 -67026801 - LTR67 LTR ERVL -10 547 83 218 325 0 25 chr11 81757150 81757230 -67026242 + L2 LINE L2 3227 3304 -9 23 0 0 0 chr11 81757533 81757556 -67025916 + AT_rich Low_complexity Low_complexity 1 23 0 189 262 49 16 chr11 81757934 81757995 -67025477 + L2 LINE L2 3250 3312 -1 845 194 76 0 chr11 81758089 81758233 -67025239 + FRAM SINE Alu 6 160 -16 517 169 0 0 chr11 81758234 81758311 -67025161 - AluJ/FLAM SINE Alu -234 78 2 198 0 0 0 chr11 81758340 81758362 -67025110 + (T)n Simple_repeat Simple_repeat 1 22 0 252 264 0 0 chr11 81758439 81758492 -67024980 + MIR SINE MIR 94 146 -116 416 250 45 8 chr11 81758663 81758795 -67024677 - MIR SINE MIR -58 204 68 24 0 0 0 chr11 81759099 81759123 -67024349 + AT_rich Low_complexity Low_complexity 1 24 0 671 295 56 68 chr11 81760133 81760541 -67022931 - L2 LINE L2 -244 3028 2612 2307 82 0 29 chr11 81760541 81760847 -67022625 + AluY SINE Alu 1 297 -14 671 295 56 68 chr11 81760847 81760871 -67022601 - L2 LINE L2 -660 2612 2589 2042 244 161 18 chr11 81761212 81762199 -67021273 + L1MC4 LINE L1 6617 7742 -66 23 0 0 0 chr11 81762215 81762238 -67021234 + AT_rich Low_complexity Low_complexity 1 23 0 213 279 16 16 chr11 81762284 81762345 -67021127 - MIR SINE MIR -93 115 55 322 301 147 7 chr11 81762866 81763002 -67020470 + MIR SINE MIR 2 156 -106 1644 157 112 32 chr11 81763087 81763399 -67020073 + MER1B DNA MER1_type 1 337 0 193 368 0 35 chr11 81763622 81763736 -67019736 - MIR SINE MIR -78 130 21 333 339 37 0 chr11 81763997 81764106 -67019366 - MIR3 SINE MIR -11 197 85 3266 191 105 56 chr11 81764361 81764758 -67018714 + L1MB7 LINE L1 3808 4184 -1994 933 200 0 0 chr11 81764758 81764913 -67018559 + FRAM SINE Alu 1 152 -24 3266 191 105 56 chr11 81764913 81765747 -67017725 + L1MB7 LINE L1 4184 4976 -1202 2273 107 0 0 chr11 81765747 81766057 -67017415 + AluY SINE Alu 1 310 -1 3266 191 105 56 chr11 81766057 81766553 -67016919 + L1MB7 LINE L1 4976 5816 -362 1522 175 0 74 chr11 81766686 81766864 -67016608 - AluJb SINE Alu -11 301 156 1925 158 3 0 chr11 81766864 81767168 -67016304 - AluJb SINE Alu -7 305 1 1522 175 0 74 chr11 81767168 81767314 -67016158 - AluJb SINE Alu -156 156 1 265 179 54 0 chr11 81767319 81767375 -67016097 + L1MB7 LINE L1 6049 6107 -77 452 96 27 27 chr11 81767413 81767486 -67015986 + L1MB7 LINE L1 6103 6175 -9 339 267 160 48 chr11 81767512 81767718 -67015754 + MIR SINE MIR 5 233 -29 2809 13 0 0 chr11 81767738 81768043 -67015429 - AluYa5 SINE Alu -6 305 1 198 225 62 88 chr11 81768116 81768196 -67015276 - MER5B DNA MER1_type -99 79 2 189 107 0 0 chr11 81768428 81768456 -67015016 + (TCTA)n Simple_repeat Simple_repeat 2 29 0 1937 95 8 0 chr11 81768875 81769139 -67014333 + L1MA2 LINE L1 5592 5857 -447 3890 83 23 2 chr11 81769139 81769648 -67013824 + L1MA2 LINE L1 5779 6304 0 444 345 7 0 chr11 81769708 81769853 -67013619 + MIR3 SINE MIR 51 196 -12 275 319 11 11 chr11 81770177 81770268 -67013204 - MIR SINE MIR -97 111 21 359 340 65 9 chr11 81770827 81771042 -67012430 + L3 LINE CR1 1116 1342 -235 280 318 87 48 chr11 81771063 81771189 -67012283 - L2 LINE L2 -1 3271 3141 374 306 45 0 chr11 81771241 81771375 -67012097 + L3 LINE CR1 1360 1499 -78 222 62 0 0 chr11 81771998 81772030 -67011442 + (TG)n Simple_repeat Simple_repeat 2 33 0 498 311 53 90 chr11 81772223 81772751 -67010721 - L2 LINE L2 -15 3257 2751 2214 86 4 4 chr11 81772751 81773055 -67010417 - AluSc SINE Alu 0 304 1 498 311 53 90 chr11 81773055 81773094 -67010378 - L2 LINE L2 -521 2751 2712 288 333 97 7 chr11 81773229 81773373 -67010099 + MER5B DNA MER1_type 1 157 -21 2150 119 0 0 chr11 81773605 81773899 -67009573 - AluSx SINE Alu -18 294 1 1564 138 25 36 chr11 81774023 81774299 -67009173 + AluJo SINE Alu 1 273 -39 261 0 0 0 chr11 81774305 81774334 -67009138 + (TC)n Simple_repeat Simple_repeat 2 30 0 948 169 22 22 chr11 81774398 81774576 -67008896 - MER58A DNA MER1_type 0 224 47 240 266 161 40 chr11 81774690 81774814 -67008658 - MIR SINE MIR -110 152 14 309 266 48 113 chr11 81775748 81775977 -67007495 + L3 LINE CR1 289 502 -1075 421 267 169 29 chr11 81776150 81776322 -67007150 + MIR SINE MIR 61 256 -6 195 312 140 11 chr11 81776361 81776454 -67007018 + L3 LINE CR1 693 797 -780 1877 146 0 23 chr11 81776818 81777119 -67006353 + AluJo SINE Alu 1 294 -18 2227 103 3 10 chr11 81777121 81777432 -67006040 + AluSq SINE Alu 1 309 -4 2121 136 30 9 chr11 81777760 81778221 -67005251 + L1MB8 LINE L1 5147 5616 -558 2363 151 28 40 chr11 81778224 81778722 -67004750 + L1MB8 LINE L1 5687 6178 0 228 313 80 45 chr11 81778869 81778970 -67004502 + MIR3 SINE MIR 92 200 -8 2358 53 0 0 chr11 81778970 81779278 -67004194 + AluY SINE Alu 1 308 0 346 294 39 0 chr11 81780053 81780155 -67003317 - MIR SINE MIR -63 145 40 330 207 36 121 chr11 81780190 81780249 -67003223 - MER5B DNA MER1_type -1 177 115 2225 104 3 3 chr11 81780249 81780548 -67002924 + AluSq SINE Alu 1 299 -14 2064 133 3 0 chr11 81780548 81780834 -67002638 + AluSx SINE Alu 1 287 -25 180 0 0 0 chr11 81780834 81780854 -67002618 + (TTAA)n Simple_repeat Simple_repeat 2 21 0 330 207 36 121 chr11 81780854 81780932 -67002540 - MER5B DNA MER1_type -60 118 50 2219 88 7 7 chr11 81781752 81782047 -67001425 - AluSx SINE Alu -17 295 1 1107 263 18 5 chr11 81782329 81782710 -67000762 - L1M4 LINE L1 -1925 4221 3836 2822 141 45 0 chr11 81782712 81783196 -67000276 - L1MB7 LINE L1 -19 6165 5660 327 309 55 0 chr11 81783459 81783569 -66999903 + L2 LINE L2 2926 3041 -231 220 286 176 11 chr11 81783618 81783709 -66999763 - MIR SINE MIR -63 145 40 2281 99 3 3 chr11 81783996 81784298 -66999174 + AluSq SINE Alu 1 302 -11 248 253 193 0 chr11 81784515 81784598 -66998874 + MIR3 SINE MIR 81 179 -29 2184 126 3 0 chr11 81784603 81784904 -66998568 - AluSx SINE Alu -10 302 1 206 362 75 43 chr11 81785119 81785307 -66998165 - L2 LINE L2 -213 3059 2866 486 167 283 8 chr11 81785816 81785936 -66997536 + MIR SINE MIR 23 175 -87 189 288 319 38 chr11 81786107 81786267 -66997205 + MIR SINE MIR 17 221 -41 360 270 11 0 chr11 81786328 81786417 -66997055 - MIR3 SINE MIR -3 205 116 186 43 0 0 chr11 81786420 81786443 -66997029 + (TC)n Simple_repeat Simple_repeat 2 24 0 342 0 0 0 chr11 81786443 81786481 -66996991 + (CA)n Simple_repeat Simple_repeat 2 39 0 396 327 101 29 chr11 81786817 81787025 -66996447 - L2 LINE L2 -24 3248 3026 2095 150 3 0 chr11 81787101 81787408 -66996064 - AluJb SINE Alu -4 308 1 202 350 94 8 chr11 81787923 81788040 -66995432 - L2 LINE L2 -12 3260 3134 2010 128 7 3 chr11 81788732 81789021 -66994451 + AluJb SINE Alu 1 290 -22 182 146 0 24 chr11 81789101 81789142 -66994330 + (TTA)n Simple_repeat Simple_repeat 2 41 0 300 167 0 0 chr11 81789269 81789311 -66994161 - MIR SINE MIR -131 77 36 303 362 6 6 chr11 81790024 81790187 -66993285 + (TATG)n Simple_repeat Simple_repeat 3 165 0 1563 155 16 0 chr11 81790372 81790623 -66992849 - AluSx SINE Alu -57 255 1 315 304 7 67 chr11 81790625 81790760 -66992712 - MIR SINE MIR -70 192 66 2219 115 3 0 chr11 81790864 81791160 -66992312 - AluSg SINE Alu -12 298 2 426 265 39 0 chr11 81791230 81791332 -66992140 + MIR3 SINE MIR 49 154 -54 698 211 29 6 chr11 81791940 81792115 -66991357 - MER104 DNA MER2_type -1 179 1 485 310 74 25 chr11 81792409 81792484 -66990988 + MIR SINE MIR 23 93 -169 2650 120 185 23 chr11 81792484 81793002 -66990470 + MER7C DNA MER2_type 1 602 0 485 310 74 25 chr11 81793002 81793129 -66990343 + MIR SINE MIR 93 235 -27 229 330 31 41 chr11 81793390 81793487 -66989985 + MIR3 SINE MIR 99 194 -14 26 0 0 0 chr11 81793504 81793530 -66989942 + AT_rich Low_complexity Low_complexity 1 26 0 406 291 43 0 chr11 81793567 81793684 -66989788 + MIR SINE MIR 30 151 -111 219 263 75 38 chr11 81793863 81793943 -66989529 + L3 LINE CR1 1486 1568 -9 1471 152 30 116 chr11 81794036 81794364 -66989108 - AluJo SINE Alu -10 302 3 323 317 20 10 chr11 81794614 81794715 -66988757 + L2 LINE L2 3193 3294 -19 265 279 135 59 chr11 81794729 81795021 -66988451 - L2 LINE L2 -218 3054 2723 246 306 118 0 chr11 81795176 81795261 -66988211 - MIR SINE MIR -64 198 104 214 286 152 9 chr11 81795472 81795584 -66987888 - MIR SINE MIR -16 246 119 249 308 44 44 chr11 81796022 81796113 -66987359 - MIR SINE MIR -78 130 40 188 191 64 0 chr11 81796371 81796418 -66987054 + MIR3 SINE MIR 159 208 0 277 269 156 36 chr11 81797614 81797872 -66985600 + HAL1 LINE L1 814 1040 -1467 2357 112 3 0 chr11 81797872 81798177 -66985295 + AluSx SINE Alu 1 306 -6 277 269 156 36 chr11 81798177 81798393 -66985079 + HAL1 LINE L1 1040 1345 -1162 358 298 102 42 chr11 81798405 81798701 -66984771 + HAL1b LINE L1 646 863 -721 1183 142 0 11 chr11 81798782 81798965 -66984507 + AluSg/x SINE Alu 124 304 -8 2143 251 76 36 chr11 81799016 81799619 -66983853 - HAL1 LINE L1 -669 1838 1176 2114 106 7 13 chr11 81799619 81799922 -66983550 - AluSc SINE Alu -8 301 1 2143 251 76 36 chr11 81799922 81800339 -66983133 - HAL1 LINE L1 -1331 1176 777 253 176 20 0 chr11 81800338 81800389 -66983083 - L1MB8 LINE L1 -57 6121 6070 * 3048 175 45 14 chr11 81800382 81801049 -66982423 - L1MB7 LINE L1 -136 6048 5361 264 258 15 0 chr11 81801158 81801224 -66982248 + (TATATG)n Simple_repeat Simple_repeat 6 72 0 1724 249 60 71 chr11 81801314 81801757 -66981715 - L1M4c LINE L1 -4559 2400 1953 2417 97 0 0 chr11 81801757 81802065 -66981407 - AluSx SINE Alu -4 308 1 1724 249 60 71 chr11 81802065 81802334 -66981138 - L1M4c LINE L1 -5006 1953 1682 2355 100 0 16 chr11 81802334 81802645 -66980827 - AluSg SINE Alu 0 310 5 1724 249 60 71 chr11 81802645 81803074 -66980398 - L1M4c LINE L1 -5277 1682 1271 246 188 35 24 chr11 81803114 81803199 -66980273 + (TTG)n Simple_repeat Simple_repeat 1 86 0 401 332 77 32 chr11 81803666 81803913 -66979559 - L1M4c LINE L1 -6585 274 17 503 284 67 10 chr11 81804933 81805127 -66978345 - MIR SINE MIR -56 206 2 1188 297 95 12 chr11 81806044 81806575 -66976897 + L2 LINE L2 2702 3279 -34 222 128 0 0 chr11 81806577 81806616 -66976856 + (TGGA)n Simple_repeat Simple_repeat 4 42 0 309 277 74 81 chr11 81806743 81806891 -66976581 - MIR SINE MIR -70 192 46 263 315 24 55 chr11 81807553 81807680 -66975792 + L2 LINE L2 3136 3258 -14 192 40 0 0 chr11 81808644 81808669 -66974803 + (ATG)n Simple_repeat Simple_repeat 1 25 0 224 233 105 23 chr11 81809340 81809426 -66974046 + L2 LINE L2 3128 3220 -93 * 231 241 121 85 chr11 81809407 81809548 -66973924 + L3 LINE CR1 1360 1505 -72 224 333 124 29 chr11 81809714 81809819 -66973653 + L2 LINE L2 3141 3255 -17 408 333 62 6 chr11 81809843 81810020 -66973452 - MIR SINE MIR -65 197 11 384 212 0 35 chr11 81810342 81810427 -66973045 + tRNA-Leu-CTA tRNA tRNA 1 82 -3 208 303 61 20 chr11 81810531 81810630 -66972842 - L2 LINE L2 -1 3271 3169 223 221 15 73 chr11 81810845 81810913 -66972559 + L2 LINE L2 3209 3272 0 1061 260 12 12 chr11 81810943 81811185 -66972287 - MIR SINE MIR -18 244 3 313 242 132 11 chr11 81812241 81812332 -66971140 + MER117 DNA MER1_type 58 159 -38 529 255 21 14 chr11 81812440 81812581 -66970891 - MIR SINE MIR -73 189 48 461 286 136 10 chr11 81813064 81813263 -66970209 + MIR SINE MIR 5 228 -34 484 233 5 70 chr11 81813272 81813418 -66970054 + MIR SINE MIR 12 142 -66 426 366 62 35 chr11 81813432 81813771 -66969701 + L2 LINE L2 2925 3272 0 220 261 0 0 chr11 81814551 81814597 -66968875 - L2 LINE L2 -8 3264 3219 3717 112 52 5 chr11 81814664 81815238 -66968234 - MER7C DNA MER2_type -1 601 1 798 196 0 6 chr11 81815264 81815437 -66968035 + L1ME3 LINE L1 5867 6038 -124 1058 179 127 15 chr11 81815461 81815729 -66967743 + L1ME3 LINE L1 5865 6162 0 196 264 38 0 chr11 81816190 81816243 -66967229 + MIR SINE MIR 93 147 -61 583 170 9 2 chr11 81817613 81817732 -66965740 - L1ME3A LINE L1 -46 6116 5996 217 222 56 28 chr11 81817822 81817894 -66965578 - MIR SINE MIR -101 161 88 583 267 99 52 chr11 81817929 81818161 -66965311 - MIR SINE MIR -6 256 14 2106 130 0 3 chr11 81818472 81818772 -66964700 - AluSx SINE Alu -13 299 1 224 268 62 10 chr11 81818839 81818936 -66964536 - L2 LINE L2 -723 2591 2490 216 304 0 43 chr11 81819002 81819071 -66964401 - L2 LINE L2 -1010 2304 2239 418 270 44 22 chr11 81819636 81819773 -66963699 + MIR SINE MIR 77 216 -46 438 284 65 26 chr11 81820073 81820228 -66963244 - MIR SINE MIR -77 185 25 404 267 50 25 chr11 81820746 81820907 -66962565 + MIR SINE MIR 84 248 -14 330 300 88 41 chr11 81821037 81821207 -66962265 - MIR SINE MIR -65 197 20 2156 123 7 0 chr11 81821307 81821607 -66961865 + AluSg SINE Alu 1 302 -8 204 258 16 48 chr11 81822299 81822361 -66961111 - L2 LINE L2 -9 3263 3204 518 283 75 12 chr11 81822851 81823024 -66960448 + MIR SINE MIR 50 233 -29 199 375 10 39 chr11 81823122 81823226 -66960246 + L2 LINE L2 2966 3066 -206 700 206 163 0 chr11 81823340 81823500 -66959972 - MER5A DNA MER1_type -3 186 1 362 261 98 0 chr11 81823514 81823606 -66959866 + L2 LINE L2 3154 3254 -18 267 286 36 0 chr11 81823915 81823999 -66959473 - L3 LINE CR1 -175 1402 1316 448 324 221 13 chr11 81824040 81824420 -66959052 - L3 LINE CR1 -366 1211 753 401 319 38 19 chr11 81824500 81824660 -66958812 - MIR SINE MIR -94 168 6 186 286 114 14 chr11 81824793 81824863 -66958609 - L3 LINE CR1 -852 725 649 262 316 195 6 chr11 81825058 81825232 -66958240 + L3 LINE CR1 1335 1541 -36 660 93 62 12 chr11 81825463 81825590 -66957882 - MLT1A1 LTR MaLR -255 110 1 252 274 68 0 chr11 81826316 81826389 -66957083 - L2 LINE L2 -49 3223 3146 446 339 31 13 chr11 81826499 81826726 -66956746 - L3 LINE CR1 -183 1394 1164 322 243 85 57 chr11 81827108 81827285 -66956187 - L1ME4a LINE L1 0 6121 5940 413 308 104 0 chr11 81827304 81827486 -66955986 - L2 LINE L2 -178 3135 2935 571 233 88 31 chr11 81827546 81827705 -66955767 - L2 LINE L2 -2883 431 264 401 123 0 99 chr11 81827706 81827787 -66955685 + MADE1 DNA Mariner 7 79 -1 673 195 221 10 chr11 81828104 81828299 -66955173 - MER106A DNA MER1_type 0 236 1 2929 154 112 36 chr11 81828481 81829098 -66954374 - L1MB8 LINE L1 -2 6176 5513 327 286 126 8 chr11 81829971 81830090 -66953382 + MIR3 SINE MIR 33 165 -43 233 293 17 0 chr11 81830463 81830521 -66952951 - L2 LINE L2 -11 3261 3203 249 362 117 0 chr11 81830600 81830694 -66952778 - L2 LINE L2 0 3272 3168 22 0 0 0 chr11 81830704 81830726 -66952746 + AT_rich Low_complexity Low_complexity 1 22 0 335 217 165 30 chr11 81831670 81831852 -66951620 - L2 LINE L2 0 3272 3038 3249 246 146 27 chr11 81831861 81833087 -66950385 - L2 LINE L2 -540 2774 1403 550 279 236 4 chr11 81833084 81833317 -66950155 - L3 LINE CR1 -42 1535 1249 * 2195 113 0 29 chr11 81833391 81833702 -66949770 - AluSx SINE Alu -10 302 1 208 268 32 89 chr11 81833710 81833833 -66949639 + MIR SINE MIR 107 222 -40 2298 119 0 0 chr11 81834082 81834394 -66949078 + AluSx SINE Alu 1 312 0 287 289 44 22 chr11 81834435 81834525 -66948947 - MIR SINE MIR -50 212 121 520 82 0 24 chr11 81835135 81835220 -66948252 + (TTCCC)n Simple_repeat Simple_repeat 5 87 0 1153 202 17 45 chr11 81835345 81835632 -66947840 - AluJo SINE Alu -33 279 1 36809 31 2 0 chr11 81835855 81840946 -66942526 - L1PA4 LINE L1 -3 6152 1055 1572 170 52 21 chr11 81840946 81841235 -66942237 - AluJb SINE Alu -10 302 5 222 37 0 0 chr11 81841622 81841649 -66941823 + (CAGGG)n Simple_repeat Simple_repeat 1 27 0 219 345 23 11 chr11 81841696 81841783 -66941689 + L2 LINE L2 3225 3312 -1 608 222 96 78 chr11 81842155 81842385 -66941087 - MIR SINE MIR -16 246 13 333 271 24 0 chr11 81842392 81842477 -66940995 - MIR3 SINE MIR -5 203 117 339 65 0 0 chr11 81842827 81842873 -66940599 + (TC)n Simple_repeat Simple_repeat 1 46 0 297 0 0 0 chr11 81842873 81842906 -66940566 + (TG)n Simple_repeat Simple_repeat 2 34 0 2295 107 0 0 chr11 81843184 81843484 -66939988 + AluSx SINE Alu 1 300 -12 1585 206 87 19 chr11 81843735 81844148 -66939324 - L1ME3 LINE L1 -160 6002 5562 431 145 0 40 chr11 81845715 81845791 -66937681 - L1MC4 LINE L1 -142 7900 7828 300 260 107 41 chr11 81845796 81845992 -66937480 - L1ME3A LINE L1 0 6564 6356 433 232 13 45 chr11 81846042 81846197 -66937275 - L1ME3A LINE L1 -204 6360 6211 1819 221 60 14 chr11 81847449 81847465 -66936007 - MLT2B1 LTR ERVL -56 464 450 1632 130 167 10 chr11 81847465 81847758 -66935714 + MER44D DNA MER2_type 1 609 0 1819 221 60 14 chr11 81847758 81848175 -66935297 - MLT2B1 LTR ERVL -70 450 11 2111 107 0 20 chr11 81848190 81848488 -66934984 + AluSg SINE Alu 4 295 -15 1783 158 45 3 chr11 81848559 81848729 -66934743 - AluJb SINE Alu -9 303 115 198 24 24 49 chr11 81848729 81848770 -66934702 + (TTTTA)n Simple_repeat Simple_repeat 2 41 0 1783 158 45 3 chr11 81848770 81848890 -66934582 - AluJb SINE Alu -197 115 1 1435 184 70 93 chr11 81849476 81849862 -66933610 - MLT1E3 LTR MaLR 0 624 278 2431 62 0 10 chr11 81849951 81850256 -66933216 - AluY SINE Alu -9 302 1 226 224 86 35 chr11 81851477 81851535 -66931937 - MIR SINE MIR -95 113 53 2436 85 0 9 chr11 81852051 81852367 -66931105 + AluSp SINE Alu 1 313 0 387 0 0 0 chr11 81853222 81853265 -66930207 + (TA)n Simple_repeat Simple_repeat 1 43 0 2251 98 0 3 chr11 81853265 81853561 -66929911 - AluSg SINE Alu -15 295 1 998 151 89 15 chr11 81854165 81854358 -66929114 - MLT1E3 LTR MaLR -420 204 11 2440 93 3 0 chr11 81854366 81854676 -66928796 + AluSp SINE Alu 2 312 -1 791 198 204 0 chr11 81856295 81856452 -66927020 + MER5A DNA MER1_type 1 189 0 500 246 48 83 chr11 81857070 81857146 -66926326 - MER34B LTR ERV1 -3 562 485 2306 100 6 0 chr11 81857146 81857457 -66926015 + AluSp SINE Alu 1 313 0 500 246 48 83 chr11 81857457 81857632 -66925840 - MER34B LTR ERV1 -80 485 320 225 330 73 0 chr11 81857775 81857884 -66925588 - MER34B LTR ERV1 -444 121 5 1121 222 186 50 chr11 81857933 81858104 -66925368 - L1ME3A LINE L1 -358 6206 6060 2434 161 16 34 chr11 81858104 81858544 -66924928 + MSTB1 LTR MaLR 1 432 0 1121 222 186 50 chr11 81858544 81858867 -66924605 - L1ME3A LINE L1 -504 6060 5652 1198 101 70 89 chr11 81858913 81859171 -66924301 - L1MD1 LINE L1 -4 6238 5986 * 3015 252 25 2 chr11 81859168 81860069 -66923403 - L1ME3A LINE L1 -3016 3524 2605 25 0 0 0 chr11 81860126 81860151 -66923321 + AT_rich Low_complexity Low_complexity 1 25 0 955 136 95 0 chr11 81860410 81860436 -66923036 + MER3 DNA MER1_type 18 59 -150 345 205 50 99 chr11 81860436 81860597 -66922875 - MER3 DNA MER1_type 0 209 57 659 239 54 44 chr11 81860668 81860793 -66922679 + MIR SINE MIR 34 163 -99 774 187 8 0 chr11 81860793 81860916 -66922556 + FLAM_A SINE Alu 1 124 -9 659 239 54 44 chr11 81860916 81860995 -66922477 + MIR SINE MIR 163 240 -22 2118 100 10 29 chr11 81861437 81861746 -66921726 + AluSx SINE Alu 10 312 0 2275 111 0 0 chr11 81862075 81862373 -66921099 + AluSx SINE Alu 1 298 -14 387 0 0 0 chr11 81862606 81862649 -66920823 + (TG)n Simple_repeat Simple_repeat 1 43 0 241 238 38 29 chr11 81863557 81863662 -66919810 + L2 LINE L2 2531 2636 -678 228 323 86 90 chr11 81864279 81864777 -66918695 - L2 LINE L2 -591 2723 2228 1325 137 16 109 chr11 81864853 81865065 -66918407 + L1MA3 LINE L1 6015 6189 -116 2276 100 0 3 chr11 81865065 81865366 -66918106 - AluSq SINE Alu -13 300 1 1325 137 16 109 chr11 81865366 81865474 -66917998 + L1MA3 LINE L1 6189 6305 0 23 33 0 0 chr11 81865492 81865522 -66917950 + AT_rich Low_complexity Low_complexity 1 30 0 552 115 66 74 chr11 81865530 81865652 -66917820 + FLAM_A SINE Alu 2 122 -11 204 111 0 0 chr11 81865652 81865688 -66917784 + (TA)n Simple_repeat Simple_repeat 2 37 0 831 237 9 19 chr11 81866321 81866532 -66916940 - L2 LINE L2 -863 2451 2243 819 248 157 17 chr11 81866760 81867168 -66916304 - L1M4 LINE L1 -3176 2970 2506 2028 138 233 20 chr11 81867196 81867638 -66915834 - LTR10A LTR ERV1 -61 548 13 271 185 0 15 chr11 81867679 81867744 -66915728 - L1M4 LINE L1 -3734 2412 2349 383 252 159 20 chr11 81867924 81868075 -66915397 + MLT1H LTR MaLR 195 366 -183 430 272 70 66 chr11 81868126 81868339 -66915133 - L2 LINE L2 -106 3207 2994 2618 117 66 104 chr11 81868587 81869135 -66914337 + MER4E LTR ERV1 1 527 -252 2068 91 62 0 chr11 81869145 81869419 -66914053 - AluSx SINE Alu -21 291 1 724 225 33 22 chr11 81869904 81870086 -66913386 - MIR SINE MIR -48 214 31 2297 55 41 7 chr11 81870094 81870385 -66913087 - AluY SINE Alu -10 301 1 349 240 137 69 chr11 81870458 81870570 -66912902 - L1MC5 LINE L1 -89 7953 7850 2406 72 20 0 chr11 81870570 81870874 -66912598 - AluSg SINE Alu 0 310 1 349 240 137 69 chr11 81870874 81870936 -66912536 - L1MC5 LINE L1 -192 7850 7653 2093 126 3 3 chr11 81871031 81871324 -66912148 + AluSq SINE Alu 1 293 -20 180 0 0 0 chr11 81872543 81872563 -66910909 + (TCTA)n Simple_repeat Simple_repeat 2 21 0 380 303 55 9 chr11 81872911 81873020 -66910452 + L2 LINE L2 3185 3298 -15 30 59 0 0 chr11 81873256 81873307 -66910165 + AT_rich Low_complexity Low_complexity 1 51 0 418 238 150 0 chr11 81873381 81873541 -66909931 - L1M4 LINE L1 -1511 4635 4452 7641 46 22 1 chr11 81873672 81875133 -66908339 - L1PA6 LINE L1 -6 6148 4674 22370 66 24 35 chr11 81875133 81879599 -66903873 - L1PA6 LINE L1 -1712 4434 11 976 208 110 109 chr11 81879641 81879677 -66903795 + MLT1E1 LTR MaLR 119 153 -501 189 0 0 0 chr11 81879677 81879698 -66903774 + (CATTA)n Simple_repeat Simple_repeat 3 23 0 976 208 110 109 chr11 81879698 81880093 -66903379 + MLT1E1 LTR MaLR 153 654 0 1474 190 39 49 chr11 81880093 81880398 -66903074 + AluJo SINE Alu 1 302 -10 746 202 0 8 chr11 81880460 81880589 -66902883 + AluSg/x SINE Alu 168 295 -15 388 270 67 85 chr11 81880589 81880978 -66902494 + L1MDa LINE L1 1481 1968 -4676 283 295 16 33 chr11 81881189 81881311 -66902161 + LTR67 LTR ERVL 428 547 -10 2013 139 32 72 chr11 81881521 81881923 -66901549 + MLT1B LTR MaLR 1 386 -4 195 318 0 0 chr11 81882809 81882875 -66900597 + L2 LINE L2 3203 3268 -4 353 317 28 42 chr11 81883399 81883419 -66900053 - MIR3 SINE MIR -67 141 122 1808 94 58 78 chr11 81883419 81883547 -66899925 + AluSx SINE Alu 1 130 -182 2362 80 13 22 chr11 81883547 81883859 -66899613 + AluSg SINE Alu 1 309 -1 1808 94 58 78 chr11 81883859 81884038 -66899434 + AluSx SINE Alu 130 302 -10 353 317 28 42 chr11 81884038 81884159 -66899313 - MIR3 SINE MIR -86 122 2 21 36 0 0 chr11 81884447 81884475 -66898997 + AT_rich Low_complexity Low_complexity 1 28 0 410 275 138 24 chr11 81884922 81885089 -66898383 - MER5A DNA MER1_type -3 186 1 276 261 43 11 chr11 81885366 81885458 -66898014 - MIR SINE MIR -1 261 167 782 241 77 88 chr11 81886033 81886521 -66896951 + MLT1H LTR MaLR 1 547 -2 279 266 28 126 chr11 81886617 81886760 -66896712 - MIR SINE MIR -104 158 30 296 268 381 0 chr11 81887996 81888164 -66895308 + MIR SINE MIR 30 261 -1 237 254 0 0 chr11 81888740 81888799 -66894673 + A-rich Low_complexity Low_complexity 1 59 0 429 281 105 7 chr11 81888808 81888961 -66894511 + MER63A DNA MER1_type 42 209 -1 294 273 188 12 chr11 81888985 81889150 -66894322 + L2 LINE L2 3120 3313 0 242 198 148 25 chr11 81889406 81889487 -66893985 + MIR SINE MIR 4 94 -168 22 0 0 0 chr11 81889596 81889618 -66893854 + AT_rich Low_complexity Low_complexity 1 22 0 4529 126 18 0 chr11 81889698 81890357 -66893115 - L1PA16 LINE L1 -20 6146 5476 709 114 0 0 chr11 81890462 81890550 -66892922 - AluSg SINE Alu -221 89 2 1991 127 24 3 chr11 81890554 81890845 -66892627 - AluSq SINE Alu -16 297 1 383 288 8 0 chr11 81891465 81891590 -66891882 - LTR37B LTR ERV1 0 468 343 11149 187 47 50 chr11 81891590 81893766 -66889706 + L1M4 LINE L1 3 2185 -4982 2269 113 3 3 chr11 81893766 81894075 -66889397 + AluSx SINE Alu 1 309 -3 11149 187 47 50 chr11 81894075 81895668 -66887804 + L1M4 LINE L1 2185 3755 -3412 2545 129 24 0 chr11 81895668 81896039 -66887433 + L1PA16 LINE L1 5785 6164 -2 11149 187 47 50 chr11 81896039 81896381 -66887091 + L1M4 LINE L1 3755 4097 -3070 1802 192 12 3 chr11 81896384 81896717 -66886755 - L1MCa LINE L1 -6089 337 2 2431 77 0 3 chr11 81896843 81897143 -66886329 - AluSc SINE Alu -10 299 1 1492 107 37 37 chr11 81897167 81897411 -66886061 + AluSq SINE Alu 67 310 -3 2239 112 3 0 chr11 81897627 81897931 -66885541 + AluSg SINE Alu 1 305 -5 1235 81 0 6 chr11 81898086 81898258 -66885214 - L1P4 LINE L1 -681 5485 5315 * 1454 237 69 5 chr11 81898253 81898671 -66884801 + L1M4 LINE L1 5515 5959 -1208 427 280 19 62 chr11 81898675 81898723 -66884749 + L1MEc LINE L1 2059 2108 -4288 1783 171 3 19 chr11 81898723 81899038 -66884434 + AluJo SINE Alu 1 310 -2 427 280 19 62 chr11 81899038 81899200 -66884272 + L1MEc LINE L1 2108 2260 -4136 1730 52 29 0 chr11 81899240 81899450 -66884022 - L1PA5 LINE L1 0 6154 5939 836 276 61 0 chr11 81899454 81899780 -66883692 + L1MEc LINE L1 2214 2559 -3656 207 0 0 0 chr11 81899780 81899803 -66883669 + (CA)n Simple_repeat Simple_repeat 2 24 0 9927 167 53 61 chr11 81900490 81900902 -66882570 + L1MA8 LINE L1 2698 3112 -3248 571 151 0 0 chr11 81900902 81900988 -66882484 + AluSg/x SINE Alu 211 296 -13 9927 167 53 61 chr11 81900988 81901352 -66882120 + L1MA8 LINE L1 3112 3477 -2883 2542 73 0 0 chr11 81901352 81901653 -66881819 + AluSq SINE Alu 1 301 -12 9927 167 53 61 chr11 81901653 81902728 -66880744 + L1MA8 LINE L1 3477 4559 -1801 2072 128 7 7 chr11 81902728 81903026 -66880446 + AluSx SINE Alu 1 298 -14 9927 167 53 61 chr11 81903026 81904441 -66879031 + L1MA8 LINE L1 4559 6023 -337 1527 189 124 0 chr11 81904443 81904708 -66878764 + AluJo SINE Alu 5 302 0 2339 89 0 13 chr11 81956247 81956550 -66826922 + AluSq SINE Alu 1 299 -14 2009 141 13 16 chr11 81956643 81956956 -66826516 + AluJo SINE Alu 1 312 0 491 233 62 14 chr11 81957502 81957648 -66825824 + MER5B DNA MER1_type 26 178 0 594 162 169 42 chr11 81957664 81957806 -66825666 - MER3 DNA MER1_type 0 209 50 341 303 48 48 chr11 81957946 81958013 -66825459 - MIR SINE MIR -30 232 166 2494 48 0 32 chr11 81958013 81958329 -66825143 + AluY SINE Alu 1 306 -5 341 303 48 48 chr11 81958329 81958449 -66825023 - MIR SINE MIR -95 167 45 1869 167 37 18 chr11 81958512 81958895 -66824577 + L1MB4 LINE L1 5785 6174 -6 427 256 101 0 chr11 81958929 81959058 -66824414 + MER103 DNA DNA 10 151 -15 2412 98 3 0 chr11 81959719 81960026 -66823446 + AluSp SINE Alu 1 308 -5 1830 64 5 0 chr11 81960299 81960518 -66822954 + AluSp SINE Alu 1 220 -93 663 164 0 0 chr11 81960519 81960629 -66822843 + AluSg/x SINE Alu 190 299 -13 660 121 0 0 chr11 81960737 81960828 -66822644 + AluSx SINE Alu 2 92 -220 1485 107 0 10 chr11 81960910 81961116 -66822356 + AluSx SINE Alu 93 296 -16 306 299 23 0 chr11 81961116 81961203 -66822269 + L1MC4 LINE L1 6615 6703 -1339 201 74 0 0 chr11 81961203 81961230 -66822242 + (TA)n Simple_repeat Simple_repeat 1 27 0 1699 189 7 14 chr11 81961238 81961535 -66821937 + AluJo SINE Alu 1 295 -17 231 36 0 0 chr11 81961751 81961779 -66821693 + (A)n Simple_repeat Simple_repeat 1 28 0 569 205 39 8 chr11 81962249 81962376 -66821096 + MLT1A2 LTR MaLR 191 321 -53 2823 151 24 97 chr11 81962807 81963404 -66820068 - MLT2B3 LTR ERVL 0 554 2 591 318 143 34 chr11 81964838 81965420 -66818052 + L2 LINE L2 1855 2499 -815 2208 114 0 7 chr11 81965429 81965726 -66817746 - AluSx SINE Alu -17 295 1 4393 177 86 43 chr11 81965726 81966989 -66816483 - L1MB1 LINE L1 -43 6125 4761 7172 180 3 14 chr11 81967169 81967778 -66815694 - HERV3 LTR ERV1 -2131 6295 5702 2663 61 0 0 chr11 81967778 81968088 -66815384 - AluY SINE Alu -1 310 1 7172 180 3 14 chr11 81968088 81968627 -66814845 - HERV3 LTR ERV1 -2724 5702 5159 6970 194 23 11 chr11 81968613 81969807 -66813665 + HERV3 LTR ERV1 2928 4135 -4291 * 2138 182 22 27 chr11 81969867 81970329 -66813143 - HERV3 LTR ERV1 -8033 393 1 3656 75 120 8 chr11 81970329 81970863 -66812609 - LTR61 LTR ERV1 0 595 2 1922 123 0 0 chr11 81970863 81971123 -66812349 + AluSc SINE Alu 27 286 -23 2242 97 0 7 chr11 81971226 81971526 -66811946 - AluSc SINE Alu -11 298 1 1515 161 137 30 chr11 81971527 81971899 -66811573 + L1MC3 LINE L1 5912 6323 -1462 20466 156 134 31 chr11 81971910 81974725 -66808747 + L1MA3 LINE L1 22 2544 -5180 390 85 34 0 chr11 81974725 81974784 -66808688 + U7 snRNA snRNA 2 62 -1 20466 156 134 31 chr11 81974784 81975801 -66807671 + L1MA3 LINE L1 2544 3454 -4270 2266 109 0 10 chr11 81975801 81976114 -66807358 + AluSp SINE Alu 1 310 -3 20466 156 134 31 chr11 81976114 81976455 -66807017 + L1MA3 LINE L1 3454 3758 -3966 728 175 17 0 chr11 81976455 81976575 -66806897 + FLAM_C SINE Alu 11 132 -11 20466 156 134 31 chr11 81976575 81979235 -66804237 + L1MA3 LINE L1 3758 7724 0 2433 81 3 0 chr11 81980149 81980446 -66803026 + AluSp SINE Alu 1 298 -15 978 193 5 21 chr11 81981085 81981277 -66802195 + MER20 DNA MER1_type 31 219 0 2147 66 53 40 chr11 81981402 81981706 -66801766 + AluY SINE Alu 2 309 -2 397 241 150 0 chr11 81981858 81981991 -66801481 - L2 LINE L2 -1 3312 3160 244 231 19 56 chr11 81982117 81982225 -66801247 - L2 LINE L2 -410 2904 2801 347 257 155 7 chr11 81982408 81982556 -66800916 - MIR SINE MIR -11 251 82 2314 87 0 0 chr11 81982576 81982852 -66800620 + AluSg SINE Alu 1 276 -34 1990 76 116 0 chr11 81982952 81983255 -66800217 + LTR61 LTR ERV1 256 593 -2 1150 160 0 5 chr11 81983284 81983478 -66799994 - L1MB3 LINE L1 -40 6143 5951 401 153 0 14 chr11 81983505 81983577 -66799895 + MER4A LTR ERV1 28 98 -566 1615 140 10 25 chr11 81983577 81983883 -66799589 + MER4A LTR ERV1 261 620 -44 1256 134 0 0 chr11 81983883 81984062 -66799410 - AluSg/x SINE Alu -2 310 132 283 200 0 0 chr11 81984063 81984118 -66799354 + MER4A LTR ERV1 610 664 0 9984 117 178 171 chr11 81984121 81984986 -66798486 + MER4A-int LTR ERV1 1 859 -5739 2086 125 3 7 chr11 81984986 81985290 -66798182 + AluSx SINE Alu 9 311 -1 1275 129 6 0 chr11 81985292 81985470 -66798002 + AluSg/x SINE Alu 121 299 -11 9984 117 178 171 chr11 81985470 81986910 -66796562 + MER4A-int LTR ERV1 859 2288 -4310 2269 92 20 0 chr11 81986910 81987203 -66796269 - AluSp SINE Alu -14 299 1 9984 117 178 171 chr11 81987203 81987822 -66795650 + MER4A-int LTR ERV1 2288 2901 -3697 2021 138 0 3 chr11 81987822 81988112 -66795360 - AluSx SINE Alu -19 293 5 9984 117 178 171 chr11 81988112 81988661 -66794811 + MER4A-int LTR ERV1 2901 3681 -2917 * 11514 97 53 45 chr11 81988659 81989012 -66794460 + MER4A-int LTR ERV1 3836 4185 -2413 1846 144 20 39 chr11 81989012 81989177 -66794295 - AluSx SINE Alu -13 299 141 2099 89 11 7 chr11 81989177 81989458 -66794014 - AluSc SINE Alu -2 307 26 1846 144 20 39 chr11 81989458 81989597 -66793875 - AluSx SINE Alu -171 141 1 11514 97 53 45 chr11 81989597 81990939 -66792533 + MER4A-int LTR ERV1 4185 5855 -743 2182 123 0 13 chr11 81990939 81991241 -66792231 + AluSx SINE Alu 1 298 -14 11514 97 53 45 chr11 81991241 81991621 -66791851 + MER4A-int LTR ERV1 5855 6231 -367 1974 148 3 0 chr11 81991628 81991912 -66791560 - AluSx SINE Alu -25 287 3 1231 131 0 0 chr11 81991928 81992104 -66791368 - AluSg/x SINE Alu -2 310 135 2621 101 16 0 chr11 81992104 81992472 -66791000 + MER4A-int LTR ERV1 6223 6596 -2 553 133 20 20 chr11 81992479 81992577 -66790895 + MER4A LTR ERV1 1 98 -566 1749 163 3 22 chr11 81992577 81992929 -66790543 + MER4A LTR ERV1 261 664 0 376 221 0 0 chr11 81992930 81992998 -66790474 + L1MC4 LINE L1 7418 7485 -557 587 126 0 0 chr11 81993000 81993087 -66790385 + AluJ/FRAM SINE Alu 217 303 -9 1675 209 76 8 chr11 81993091 81993488 -66789984 + L1MC4 LINE L1 7479 7902 -140 339 129 5 0 chr11 81993490 81993554 -66789918 + L1MC4 LINE L1 7929 8041 -1 2171 93 0 20 chr11 81993626 81993927 -66789545 - AluSx SINE Alu -15 297 3 199 284 15 0 chr11 81994101 81994168 -66789304 - MIR SINE MIR -15 247 180 * 312 228 203 47 chr11 81994149 81994381 -66789091 + L2 LINE L2 2822 3089 -183 1091 61 0 8 chr11 81994899 81995031 -66788441 + AluY SINE Alu 2 132 -179 279 0 0 0 chr11 81995031 81995062 -66788410 + (A)n Simple_repeat Simple_repeat 1 31 0 28 0 0 0 chr11 81995168 81995196 -66788276 + AT_rich Low_complexity Low_complexity 1 28 0 2208 110 7 0 chr11 81995445 81995737 -66787735 + AluSx SINE Alu 1 294 -18 2254 79 45 0 chr11 81995903 81996194 -66787278 - AluSg SINE Alu -6 304 1 1117 150 0 17 chr11 81996859 81997039 -66786433 - AluSg/x SINE Alu -4 308 132 2411 84 3 0 chr11 81997040 81997336 -66786136 - AluSp SINE Alu -16 297 1 1092 92 24 145 chr11 81997364 81997430 -66786042 - AluSq SINE Alu -131 182 110 1428 41 0 0 chr11 81997430 81997599 -66785873 - L1PA6 LINE L1 -5 6149 5981 1092 92 24 145 chr11 81997599 81997739 -66785733 - AluSq SINE Alu -203 110 1 473 130 0 0 chr11 81997749 81997818 -66785654 - AluJ/FRAM SINE Alu -11 301 233 715 264 25 0 chr11 81997921 81998122 -66785350 + MIR SINE MIR 56 261 -1 198 272 240 0 chr11 81998121 81998246 -66785226 + L2 LINE L2 3117 3271 -1 * 778 154 23 23 chr11 81998397 81998527 -66784945 - FLAM_C SINE Alu -11 132 3 1206 188 3 52 chr11 81998609 81998918 -66784554 - AluSx SINE Alu -18 294 1 392 156 0 52 chr11 81998995 81999072 -66784400 + L1MC/D LINE L1 5703 5775 -467 407 291 84 19 chr11 81999212 81999380 -66784092 - L1MC4a LINE L1 -1935 5873 5687 2752 23 0 0 chr11 81999380 81999679 -66783793 + AluY SINE Alu 1 299 -12 407 291 84 19 chr11 81999679 81999723 -66783749 - L1MC4a LINE L1 -2121 5687 5647 736 151 170 25 chr11 81999724 81999883 -66783589 + MER20 DNA MER1_type 1 182 -37 282 116 23 0 chr11 81999952 81999995 -66783477 - MLT1H LTR MaLR 0 549 506 478 197 51 0 chr11 82000274 82000391 -66783081 - L1MB4 LINE L1 -6 6174 6052 775 185 12 0 chr11 82000602 82000764 -66782708 + FRAM SINE Alu 1 164 -2 2376 55 7 26 chr11 82000778 82001121 -66782351 + AluSp SINE Alu 1 313 0 1767 105 13 0 chr11 82001260 82001498 -66781974 + AluSg SINE Alu 11 251 -59 996 114 0 0 chr11 82001598 82001738 -66781734 + AluSp/q SINE Alu 170 309 -4 820 187 48 30 chr11 82001739 82001905 -66781567 + AluSg/x SINE Alu 125 293 -19 1440 220 33 0 chr11 82001915 82002215 -66781257 + AluJo SINE Alu 1 310 -2 2105 124 6 19 chr11 82002471 82002786 -66780686 + AluSx SINE Alu 1 311 -1 2288 92 7 10 chr11 82003028 82003332 -66780140 + AluSx SINE Alu 3 305 -7 180 222 14 69 chr11 82003547 82003619 -66779853 + L2 LINE L2 3193 3260 -12 261 83 0 0 chr11 82003620 82003656 -66779816 + (TGGA)n Simple_repeat Simple_repeat 3 38 0 226 98 0 0 chr11 82003741 82003782 -66779690 - L1MA3 LINE L1 0 6305 6265 611 149 18 36 chr11 82003782 82003950 -66779522 + CT-rich Low_complexity Low_complexity 4 168 0 1329 176 119 0 chr11 82003967 82004211 -66779261 - AluJb SINE Alu -39 273 1 1840 176 3 3 chr11 82004270 82004577 -66778895 - AluJb SINE Alu -5 307 1 350 361 87 9 chr11 82004759 82004989 -66778483 + L3 LINE CR1 1329 1576 -1 371 251 149 28 chr11 82005506 82005721 -66777751 + MIR SINE MIR 14 254 -8 308 239 131 31 chr11 82005809 82005939 -66777533 + MIR3 SINE MIR 17 159 -49 431 149 40 0 chr11 82005971 82006045 -66777427 + MER84 LTR ERVI 1 77 -430 827 109 0 8 chr11 82006049 82006168 -66777304 + MER84 LTR ERVI 2 119 -388 4378 78 12 12 chr11 82006170 82006749 -66776723 + LTR7-int LTR ERV1 4301 4879 -75 2235 138 50 32 chr11 82006749 82007191 -66776281 + LTR7 LTR ERV1 1 450 0 1017 218 26 36 chr11 82007191 82007653 -66775819 + HERVH LTR ERV1 1 459 -7254 21321 131 21 37 chr11 82007679 82011226 -66772246 + HERVH LTR ERV1 802 4292 -3421 282 68 0 136 chr11 82011253 82011312 -66772160 + HERVH LTR ERV1 7663 7713 0 3464 111 28 9 chr11 82011313 82011844 -66771628 + HERVH LTR ERV1 7173 7713 0 2260 155 48 20 chr11 82011844 82012282 -66771190 + LTR7 LTR ERV1 1 450 0 544 64 26 0 chr11 82012282 82012360 -66771112 + MER84-int LTR ERV1 4875 4954 0 1167 209 112 62 chr11 82012360 82012527 -66770945 + MER84 LTR ERV1 1 158 -349 1678 102 4 51 chr11 82012527 82012781 -66770691 + AluSq SINE Alu 2 243 -70 1167 209 112 62 chr11 82012781 82013096 -66770376 + MER84 LTR ERV1 158 507 0 468 197 88 61 chr11 82013097 82013132 -66770340 + MER5B DNA MER1_type 28 61 -117 1705 147 37 4 chr11 82013132 82013404 -66770068 + AluJb SINE Alu 1 281 -31 468 197 88 61 chr11 82013404 82013515 -66769957 + MER5B DNA MER1_type 61 178 0 245 232 0 36 chr11 82013515 82013554 -66769918 + MIR3 SINE MIR 155 191 -17 271 328 177 15 chr11 82013591 82013789 -66769683 - MIR SINE MIR -1 261 32 1171 173 138 9 chr11 82014003 82014228 -66769244 - AluSg1 SINE Alu -23 286 33 23 0 0 0 chr11 82014606 82014629 -66768843 + AT_rich Low_complexity Low_complexity 1 23 0 1001 144 14 0 chr11 82015006 82015152 -66768320 + AluJb SINE Alu 1 148 -164 1009 167 24 0 chr11 82015158 82015326 -66768146 + AluJb SINE Alu 104 275 -37 650 181 43 0 chr11 82015721 82015837 -66767635 - FLAM_A SINE Alu -16 126 6 225 0 0 0 chr11 82015837 82015862 -66767610 + (T)n Simple_repeat Simple_repeat 1 25 0 2160 101 66 0 chr11 82016054 82016341 -66767131 - AluSx SINE Alu -6 306 1 1383 98 0 5 chr11 82016441 82016625 -66766847 - AluSp SINE Alu -14 299 117 2211 100 47 0 chr11 82016811 82017110 -66766362 + AluSq SINE Alu 1 313 0 1849 178 0 3 chr11 82017237 82017529 -66765943 - AluJb SINE Alu -21 291 1 581 251 136 81 chr11 82017587 82017971 -66765501 - MLT1H LTR MaLR -147 408 64 1433 131 9 26 chr11 82019980 82020209 -66763263 - AluJo SINE Alu -1 311 87 2434 73 0 0 chr11 82020791 82021078 -66762394 + AluY SINE Alu 1 287 -24 2004 141 46 12 chr11 82021275 82021601 -66761871 + MER1B DNA MER1_type 1 337 0 2141 91 77 0 chr11 82021656 82021941 -66761531 + AluSx SINE Alu 1 307 -5 4861 141 12 19 chr11 82022059 82022950 -66760522 - MER57B-int LTR ERV1 -4777 1169 185 2195 104 14 7 chr11 82022950 82023247 -66760225 + AluSp SINE Alu 1 299 -14 4861 141 12 19 chr11 82023247 82023431 -66760041 - MER57B-int LTR ERV1 -5761 185 1 3091 122 0 0 chr11 82023431 82023865 -66759607 - MER57B LTR ERV1 0 434 1 1305 164 0 27 chr11 82023902 82024121 -66759351 - AluJb SINE Alu -23 289 77 305 221 81 94 chr11 82024299 82024448 -66759024 + MIR SINE MIR 116 262 0 255 103 0 0 chr11 82024846 82024885 -66758587 + (T)n Simple_repeat Simple_repeat 1 39 0 26 0 0 0 chr11 82025078 82025104 -66758368 + GC_rich Low_complexity Low_complexity 1 26 0 288 0 0 0 chr11 82025122 82025154 -66758318 + (A)n Simple_repeat Simple_repeat 1 32 0 956 232 57 24 chr11 82025154 82025489 -66757983 + L1MB7 LINE L1 5016 5360 -797 863 174 6 36 chr11 82025524 82025691 -66757781 - FRAM SINE Alu 0 166 5 1675 182 0 21 chr11 82025702 82025993 -66757479 - AluJo SINE Alu -17 295 11 3540 173 94 28 chr11 82026005 82026507 -66756965 + L1MB7 LINE L1 5318 5785 -399 2438 68 17 0 chr11 82026507 82026800 -66756672 + AluSx SINE Alu 1 298 -14 3540 173 94 28 chr11 82026800 82027028 -66756444 + L1MB7 LINE L1 5785 6108 -76 3076 130 89 48 chr11 82027028 82027637 -66755835 + MER51A LTR ERV1 1 634 0 3540 173 94 28 chr11 82027637 82027703 -66755769 + L1MB7 LINE L1 6108 6168 -16 2259 103 0 3 chr11 82027789 82028090 -66755382 + AluSc SINE Alu 2 301 -8 188 220 0 20 chr11 82028297 82028347 -66755125 - MER5B DNA MER1_type -113 65 17 206 281 47 16 chr11 82028373 82028437 -66755035 - MIR3 SINE MIR -50 158 93 189 0 0 0 chr11 82028552 82028573 -66754899 + (A)n Simple_repeat Simple_repeat 1 21 0 323 181 64 64 chr11 82029008 82029102 -66754370 - MIR SINE MIR 0 262 169 1229 153 53 18 chr11 82029449 82029677 -66753795 - MER46A DNA MER2_type 0 236 1 2116 118 3 7 chr11 82029767 82030064 -66753408 - AluSq SINE Alu -17 296 1 1812 111 0 0 chr11 82030092 82030326 -66753146 - AluSq SINE Alu -79 234 1 570 234 99 18 chr11 82031095 82031266 -66752206 + MIR SINE MIR 72 256 -6 568 219 115 36 chr11 82032416 82032608 -66750864 - MIR SINE MIR 0 262 56 2309 84 10 7 chr11 82032765 82033075 -66750397 + AluSp SINE Alu 1 311 -2 24 0 0 0 chr11 82033075 82033099 -66750373 + GC_rich Low_complexity Low_complexity 1 24 0 984 210 0 15 chr11 82033205 82033410 -66750062 + AluJo SINE Alu 106 307 -5 481 270 65 48 chr11 82033410 82033745 -66749727 - MLT1K LTR MaLR -50 538 160 3274 89 23 50 chr11 82033912 82034395 -66749077 - MER1A DNA MER1_type 0 529 60 214 335 77 26 chr11 82034396 82034590 -66748882 - L3b LINE CR1 -84 1499 1296 256 302 10 42 chr11 82034707 82034803 -66748669 + MER117 DNA MER1_type 105 197 0 990 244 70 101 chr11 82035230 82036134 -66747338 - L1MC5 LINE L1 -36 7925 7050 2203 149 76 24 chr11 82036137 82036546 -66746926 - MER61C LTR ERV1 0 434 5 13493 98 50 19 chr11 82036556 82037624 -66745848 - MER61C-int LTR ERV1 0 5217 4054 2348 85 3 0 chr11 82037624 82037919 -66745553 + AluSp SINE Alu 1 296 -17 13493 98 50 19 chr11 82037919 82038850 -66744622 - MER61C-int LTR ERV1 -1163 4054 3154 5212 120 8 3 chr11 82038852 82039611 -66743861 + L1PA16 LINE L1 5397 6159 -7 622 247 82 36 chr11 82039596 82039796 -66743676 + L1MC5 LINE L1 7680 7892 -69 * 2387 98 0 0 chr11 82039796 82040092 -66743380 - AluSg SINE Alu -14 296 1 622 247 82 36 chr11 82040092 82040110 -66743362 + L1MC5 LINE L1 7892 7908 -53 202 362 107 20 chr11 82040527 82040723 -66742749 + L2 LINE L2 2701 2913 -401 306 266 151 36 chr11 82040806 82040945 -66742527 + L2 LINE L2 2937 3091 -181 255 31 0 0 chr11 82041084 82041116 -66742356 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 422 245 31 20 chr11 82041116 82041209 -66742263 + L2 LINE L2 3184 3277 -36 1534 157 70 17 chr11 82041437 82041724 -66741748 + AluJb SINE Alu 1 302 -10 335 247 53 93 chr11 82042860 82043010 -66740462 + L1ME4a LINE L1 5835 5978 -143 2333 99 0 0 chr11 82043010 82043303 -66740169 + AluSg SINE Alu 1 293 -17 1851 175 0 0 chr11 82043468 82043777 -66739695 - AluSx SINE Alu -3 309 1 689 276 79 5 chr11 82043787 82044001 -66739471 - MIR SINE MIR -13 249 20 207 216 0 39 chr11 82043987 82044038 -66739434 + L2 LINE L2 2772 2820 -494 * 1093 209 100 81 chr11 82044090 82044222 -66739250 - L1MC5 LINE L1 -32 7929 7801 1710 129 0 23 chr11 82044222 82044486 -66738986 - AluJb SINE Alu -14 298 41 1093 209 100 81 chr11 82044486 82044738 -66738734 - L1MC5 LINE L1 -160 7801 7555 1579 171 52 25 chr11 82044738 82045024 -66738448 - AluJo SINE Alu -18 294 1 1093 209 100 81 chr11 82045024 82045395 -66738077 - L1MC5 LINE L1 -406 7555 7241 304 203 0 0 chr11 82045396 82045468 -66738004 - L1MC4 LINE L1 -728 7233 7179 251 340 176 26 chr11 82045943 82046284 -66737188 - L2 LINE L2 -74 3198 2807 1447 165 4 16 chr11 82046395 82046637 -66736835 - L1MB5 LINE L1 -8 6166 5928 180 0 0 0 chr11 82047582 82047602 -66735870 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2169 119 33 0 chr11 82047602 82047905 -66735567 - L1PA15 LINE L1 -10 6155 5843 2294 114 0 0 chr11 82047954 82048251 -66735221 + AluSx SINE Alu 1 297 -15 244 143 41 0 chr11 82048423 82048472 -66735000 + L1MC4 LINE L1 6658 6708 -1334 274 143 62 161 chr11 82048606 82048641 -66734831 - L1MB5 LINE L1 -682 5439 5402 683 176 46 0 chr11 82048641 82048772 -66734700 + L1MA3 LINE L1 6164 6300 -5 274 143 62 161 chr11 82048772 82048864 -66734608 - L1MB5 LINE L1 -719 5402 5332 2357 91 0 3 chr11 82048864 82049171 -66734301 - AluY SINE Alu -5 306 1 274 143 62 161 chr11 82049171 82049203 -66734269 - L1MB5 LINE L1 -789 5332 5298 257 29 0 0 chr11 82049203 82049237 -66734235 - HY3 scRNA scRNA -2 99 66 1546 174 76 0 chr11 82049295 82049583 -66733889 + AluJo SINE Alu 3 312 0 627 292 121 41 chr11 82049949 82050686 -66732786 - L1MB5 LINE L1 -1353 4793 3998 6566 183 58 33 chr11 82050798 82051010 -66732462 + L1 LINE L1 2819 3024 -3122 1669 186 20 7 chr11 82051010 82051311 -66732161 + AluJb SINE Alu 1 305 -7 6566 183 58 33 chr11 82051311 82051367 -66732105 + L1 LINE L1 3024 3077 -3069 2541 59 3 0 chr11 82051367 82051672 -66731800 + AluY SINE Alu 2 307 -4 6566 183 58 33 chr11 82051672 82052959 -66730513 + L1 LINE L1 3077 4414 -1732 2345 98 0 0 chr11 82052959 82053254 -66730218 + AluSx SINE Alu 1 295 -17 2442 88 0 3 chr11 82053341 82053647 -66729825 + AluSc SINE Alu 5 309 0 1668 170 32 3 chr11 82054949 82055232 -66728240 + AluJo SINE Alu 1 291 -21 2368 123 57 17 chr11 82055843 82056193 -66727279 + THE1B LTR MaLR 1 364 0 1560 90 0 45 chr11 82056216 82056439 -66727033 + AluSq SINE Alu 1 213 -100 1898 100 0 0 chr11 82056440 82056703 -66726769 + AluSx SINE Alu 42 304 0 2054 89 36 21 chr11 82056714 82056994 -66726478 + AluSx SINE Alu 1 284 -28 297 0 0 0 chr11 82056994 82057027 -66726445 + (CA)n Simple_repeat Simple_repeat 2 34 0 1526 103 5 0 chr11 82057154 82057357 -66726115 + AluSq SINE Alu 93 296 -17 1905 166 30 19 chr11 82057360 82057722 -66725750 + MLT2D LTR ERVL 1 366 -48 671 138 33 18 chr11 82057765 82057890 -66725582 + MLT1B LTR MaLR 282 390 0 1613 122 0 0 chr11 82058450 82058671 -66724801 + AluSg/x SINE Alu 83 303 -7 1535 177 30 37 chr11 82059305 82059604 -66723868 + AluJo SINE Alu 1 297 -15 1674 174 3 7 chr11 82059979 82060266 -66723206 + AluJb SINE Alu 1 286 -26 2357 69 3 3 chr11 82060534 82060822 -66722650 + AluSp SINE Alu 1 288 -25 249 33 0 0 chr11 82061627 82061657 -66721815 + (TG)n Simple_repeat Simple_repeat 2 31 0 333 122 0 0 chr11 82061979 82062036 -66721436 - AluY SINE Alu -218 83 33 1434 156 113 51 chr11 82062118 82062355 -66721117 - AluJb SINE Alu -10 292 34 2202 106 0 3 chr11 82062355 82062648 -66720824 + AluSg SINE Alu 1 292 -18 1434 156 113 51 chr11 82062648 82062685 -66720787 - AluJb SINE Alu -268 34 1 2399 57 0 20 chr11 82062695 82062996 -66720476 - AluY SINE Alu -16 295 1 2139 94 3 29 chr11 82063155 82063464 -66720008 + AluSc SINE Alu 1 301 -8 5541 137 131 54 chr11 82063664 82064244 -66719228 + MER41-int LTR ERV1 1121 1655 -4291 2227 98 13 7 chr11 82064244 82064551 -66718921 - AluSg SINE Alu -1 309 1 5541 137 131 54 chr11 82064551 82064777 -66718695 + MER41-int LTR ERV1 1655 1862 -4084 1757 175 0 3 chr11 82064777 82065068 -66718404 + AluJb SINE Alu 2 291 -21 5541 137 131 54 chr11 82065068 82065363 -66718109 + MER41-int LTR ERV1 1862 2307 -3639 699 142 0 0 chr11 82065364 82065484 -66717988 + (TTCC)n Simple_repeat Simple_repeat 1 120 0 2002 140 17 0 chr11 82065484 82065784 -66717688 - AluSx SINE Alu -7 305 1 2831 148 44 17 chr11 82065784 82066303 -66717169 - LTR8 LTR ERV1 -155 536 4 1047 169 26 37 chr11 82066307 82066496 -66716976 - AluJo SINE Alu -125 187 1 323 213 120 0 chr11 82066541 82066616 -66716856 + MER68 LTR ERV1 479 562 0 601 232 60 94 chr11 82066620 82066674 -66716798 + MER68-int LTR ERV1 5 50 -4141 923 237 36 32 chr11 82066674 82066953 -66716519 + HERVL68 LTR ERVL 1 280 -2757 1227 178 95 83 chr11 82066958 82067292 -66716180 + HERVL68 LTR ERVL 436 777 -2260 2103 98 25 0 chr11 82067292 82067605 -66715867 - AluSp SINE Alu 0 313 1 1227 178 95 83 chr11 82067605 82067669 -66715803 + HERVL68 LTR ERVL 777 839 -2198 5142 198 44 47 chr11 82067779 82067848 -66715624 + HERVL68 LTR ERVL 863 931 -2106 432 0 0 0 chr11 82067848 82067896 -66715576 + (TTC)n Simple_repeat Simple_repeat 2 49 0 5142 198 44 47 chr11 82067896 82067921 -66715551 + HERVL68 LTR ERVL 931 955 -2082 2191 92 7 11 chr11 82067921 82068204 -66715268 - AluSx SINE Alu -30 282 1 5142 198 44 47 chr11 82068204 82068392 -66715080 + HERVL68 LTR ERVL 955 1142 -1895 2498 75 3 0 chr11 82068392 82068698 -66714774 - AluSq SINE Alu -6 307 1 5142 198 44 47 chr11 82068698 82069607 -66713865 + HERVL68 LTR ERVL 1142 2053 -984 274 145 14 14 chr11 82069613 82069682 -66713790 + T-rich Low_complexity Low_complexity 4 72 0 2681 169 37 76 chr11 82069712 82070161 -66713311 + HERVL68 LTR ERVL 2041 2506 -531 2229 78 7 3 chr11 82070161 82070475 -66712997 + AluY SINE Alu 1 315 0 2681 169 37 76 chr11 82070475 82070525 -66712947 + HERVL68 LTR ERVL 2506 2556 -481 1707 178 18 0 chr11 82070525 82070831 -66712641 - AluJb SINE Alu 0 311 1 2681 169 37 76 chr11 82070831 82070974 -66712498 + HERVL68 LTR ERVL 2556 2662 -375 2204 205 109 12 chr11 82071021 82071533 -66711939 + MER68 LTR ERV1 1 562 0 2012 192 80 24 chr11 82071538 82072038 -66711434 + L1M4 LINE L1 3796 4323 -1823 2068 124 0 25 chr11 82072039 82072353 -66711119 + AluSg SINE Alu 1 306 -4 3412 170 26 68 chr11 82072383 82072867 -66710605 - L1MB3 LINE L1 -9 6174 5730 2223 110 7 0 chr11 82072867 82073168 -66710304 + AluSx SINE Alu 1 303 -9 3412 170 26 68 chr11 82073168 82073424 -66710048 - L1MB3 LINE L1 -453 5730 5465 226 277 0 0 chr11 82073421 82073468 -66710004 - L1 LINE L1 -1689 4457 4411 * 2186 123 7 0 chr11 82073485 82073786 -66709686 + AluSq SINE Alu 1 303 -10 765 123 9 0 chr11 82073811 82073917 -66709555 - FLAM_A SINE Alu -14 128 22 294 136 0 0 chr11 82073917 82073961 -66709511 + L1M4 LINE L1 4325 4368 -1778 2078 134 0 0 chr11 82073962 82074278 -66709194 + AluSq SINE Alu 1 316 0 1882 215 2 42 chr11 82074279 82074599 -66708873 + L1M4 LINE L1 4589 4887 -1259 1736 170 37 7 chr11 82074599 82074771 -66708701 - AluSx SINE Alu -9 303 117 180 0 0 0 chr11 82074771 82074791 -66708681 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1736 170 37 7 chr11 82074791 82074912 -66708560 - AluSx SINE Alu -195 117 1 1882 215 2 42 chr11 82074912 82075046 -66708426 + L1M4 LINE L1 4887 5025 -1121 2093 100 4 0 chr11 82075048 82075318 -66708154 + AluSp SINE Alu 29 299 -14 1064 148 11 11 chr11 82075334 82075510 -66707962 + AluSg/x SINE Alu 137 312 0 284 101 0 236 chr11 82075652 82075741 -66707731 - MADE1 DNA Mariner -12 68 1 344 293 7 64 chr11 82077247 82077387 -66706085 - L3 LINE CR1 -187 1390 1259 22 35 0 0 chr11 82077621 82077650 -66705822 + AT_rich Low_complexity Low_complexity 1 29 0 234 0 0 0 chr11 82079057 82079083 -66704389 + (TG)n Simple_repeat Simple_repeat 1 26 0 25 31 0 0 chr11 82081054 82081086 -66702386 + AT_rich Low_complexity Low_complexity 1 32 0 321 68 0 0 chr11 82083371 82083415 -66700057 + (CA)n Simple_repeat Simple_repeat 2 45 0 25 0 0 0 chr11 82084092 82084117 -66699355 + AT_rich Low_complexity Low_complexity 1 25 0 2316 97 0 3 chr11 82085320 82085618 -66697854 - AluSg SINE Alu -13 297 1 2091 134 0 13 chr11 82085618 82085917 -66697555 - AluSx SINE Alu -17 295 1 1504 159 55 7 chr11 82086159 82086468 -66697004 - MER2 DNA MER2_type -20 325 2 1977 227 94 8 chr11 82086485 82086997 -66696475 + L2 LINE L2 2184 2739 -575 198 240 0 20 chr11 82087066 82087116 -66696356 + L2 LINE L2 2750 2798 -516 1036 176 50 5 chr11 82087117 82087316 -66696156 - MER3 DNA MER1_type 0 209 2 339 219 86 19 chr11 82087354 82087459 -66696013 - MER58 DNA MER1_type -55 2365 175 1452 194 45 10 chr11 82087463 82087752 -66695720 + AluJo SINE Alu 1 299 -13 1143 309 86 19 chr11 82087797 82088228 -66695244 + L2 LINE L2 2813 3272 -41 2373 93 3 6 chr11 82088442 82088755 -66694717 + AluSx SINE Alu 1 312 0 1198 144 6 0 chr11 82088856 82089029 -66694443 - AluSx SINE Alu -138 174 1 753 198 12 49 chr11 82089464 82089626 -66693846 - AluJb SINE Alu -22 290 135 2290 119 0 0 chr11 82089768 82090078 -66693394 - AluSx SINE Alu -2 310 1 683 209 82 3 chr11 82090546 82090848 -66692624 + L1MC4 LINE L1 6952 7325 -717 1308 205 101 31 chr11 82090852 82091296 -66692176 + L1MC4 LINE L1 7430 7904 -138 2041 94 8 0 chr11 82091814 82092080 -66691392 + AluSp SINE Alu 1 268 -45 187 287 0 53 chr11 82092478 82092572 -66690900 + MIR SINE MIR 116 204 -58 700 346 78 49 chr11 82092598 82093346 -66690126 + L2 LINE L2 2328 3105 -167 937 118 0 0 chr11 82094330 82094483 -66688989 - L1MB7 LINE L1 -25 6159 6007 2371 69 6 31 chr11 82095290 82095607 -66687865 - AluSc SINE Alu 0 309 1 935 224 110 9 chr11 82095644 82095872 -66687600 + MLT1A1 LTR MaLR 1 251 -114 901 248 9 5 chr11 82095869 82096083 -66687389 + MLT1A1 LTR MaLR 151 365 0 * 1356 221 46 15 chr11 82096085 82096410 -66687062 - MER58B DNA MER1_type -5 336 2 2081 138 3 3 chr11 82096487 82096792 -66686680 + AluJb SINE Alu 3 307 -5 611 211 113 11 chr11 82097019 82097204 -66686268 - MER3 DNA MER1_type 0 209 6 1572 155 52 31 chr11 82097258 82097548 -66685924 + AluJo SINE Alu 1 296 -16 680 205 0 8 chr11 82097563 82097685 -66685787 + FLAM_A SINE Alu 1 121 -12 338 271 213 0 chr11 82097754 82097876 -66685596 - L1ME4a LINE L1 -286 5835 5688 1398 190 28 34 chr11 82097903 82098256 -66685216 + LTR65 LTR ERV1 1 351 -318 240 184 0 0 chr11 82098497 82098546 -66684926 + CT-rich Low_complexity Low_complexity 4 52 0 704 186 0 0 chr11 82098561 82098674 -66684798 - FLAM_C SINE Alu -30 113 1 26 30 0 0 chr11 82099509 82099542 -66683930 + AT_rich Low_complexity Low_complexity 1 33 0 440 260 47 16 chr11 82099694 82099821 -66683651 - L2 LINE L2 -4 3309 3179 355 309 39 69 chr11 82099968 82100105 -66683367 - L2 LINE L2 -402 2912 2783 2263 101 0 0 chr11 82100105 82100402 -66683070 + AluSc SINE Alu 1 297 -12 355 309 39 69 chr11 82100402 82100497 -66682975 - L2 LINE L2 -531 2783 2687 632 157 8 22 chr11 82100516 82100650 -66682822 + FLAM_C SINE Alu 1 132 -1 2171 100 4 0 chr11 82101803 82102115 -66681357 + AluSq SINE Alu 3 315 0 1928 154 4 0 chr11 82102390 82102690 -66680782 - AluSx SINE Alu 0 301 1 21 36 0 0 chr11 82103196 82103224 -66680248 + AT_rich Low_complexity Low_complexity 1 28 0 1497 171 65 31 chr11 82103233 82103525 -66679947 + AluJo SINE Alu 1 302 -10 1586 162 23 68 chr11 82104499 82104808 -66678664 + AluSx SINE Alu 1 295 -17 2094 104 0 24 chr11 82105104 82105412 -66678060 + AluSx SINE Alu 1 301 0 783 165 0 8 chr11 82105739 82105872 -66677600 + FLAM_A SINE Alu 1 132 -1 222 204 78 144 chr11 82106648 82106815 -66676657 + L2 LINE L2 3081 3236 -77 2324 114 0 0 chr11 82106978 82107284 -66676188 + AluSg SINE Alu 1 306 -4 1632 94 155 0 chr11 82107542 82107814 -66675658 - AluSx SINE Alu 0 310 1 1430 237 21 0 chr11 82107841 82108170 -66675302 - MER58B DNA MER1_type -5 336 1 693 100 0 0 chr11 82108746 82108846 -66674626 + HY3 scRNA scRNA 1 100 -1 1917 163 3 0 chr11 82108984 82109287 -66674185 - AluSx SINE Alu 0 304 1 21 0 0 0 chr11 82109298 82109319 -66674153 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr11 82109330 82109357 -66674115 + (T)n Simple_repeat Simple_repeat 1 27 0 27 0 0 0 chr11 82109369 82109396 -66674076 + GC_rich Low_complexity Low_complexity 1 27 0 2047 111 38 0 chr11 82110077 82110366 -66673106 + AluSq SINE Alu 1 300 -13 308 246 51 72 chr11 82111781 82111919 -66671553 - MIR SINE MIR -47 215 81 1330 111 0 0 chr11 82112214 82112385 -66671087 + AluSc SINE Alu 1 171 -138 2169 114 7 3 chr11 82112520 82112818 -66670654 + AluSq SINE Alu 2 300 -13 1937 233 118 50 chr11 82113199 82113955 -66669517 + L2 LINE L2 373 1179 -2135 22 0 0 0 chr11 82113955 82113977 -66669495 + AT_rich Low_complexity Low_complexity 1 22 0 2216 95 3 0 chr11 82114329 82114612 -66668860 + AluSp SINE Alu 1 284 -29 2348 99 0 0 chr11 82114727 82115021 -66668451 - AluSc SINE Alu -15 294 1 360 0 0 0 chr11 82115810 82115850 -66667622 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 2175 93 0 4 chr11 82115850 82116128 -66667344 - AluSc SINE Alu -32 277 1 4299 189 121 74 chr11 82116583 82117153 -66666319 - L1MD3 LINE L1 -9 7986 7444 377 176 59 0 chr11 82117153 82117238 -66666234 - MLT1F1 LTR MaLR -471 96 7 4299 189 121 74 chr11 82117238 82117983 -66665489 - L1MD3 LINE L1 -551 7444 6521 228 211 118 0 chr11 82117952 82118028 -66665444 - L1MC4a LINE L1 -1324 6484 6400 * 255 345 155 5 chr11 82119023 82119217 -66664255 - MIR SINE MIR -6 256 34 2166 92 7 7 chr11 82119527 82119821 -66663651 - AluSc SINE Alu -15 294 1 629 193 108 48 chr11 82120540 82120706 -66662766 - MER20 DNA MER1_type -4 215 40 2384 72 0 7 chr11 82121087 82121391 -66662081 - AluY SINE Alu -9 302 1 860 160 63 0 chr11 82122508 82122683 -66660789 + L1MB8 LINE L1 5970 6155 -23 317 194 0 0 chr11 82122960 82123022 -66660450 + L1MB7 LINE L1 6062 6123 -61 2131 86 7 10 chr11 82123022 82123314 -66660158 - AluSx SINE Alu -15 297 7 181 244 113 52 chr11 82123550 82123665 -66659807 + L2 LINE L2 2060 2181 -1133 2266 108 10 0 chr11 82123731 82124037 -66659435 - AluJb SINE Alu -3 309 1 1010 220 37 35 chr11 82124227 82124562 -66658910 + MLT1E2 LTR MaLR 1 388 -238 282 95 0 0 chr11 82124913 82124955 -66658517 + (A)n Simple_repeat Simple_repeat 1 42 0 2201 92 7 3 chr11 82125059 82125352 -66658120 - AluSc SINE Alu -15 294 1 629 193 108 48 chr11 82126072 82126238 -66657234 - MER20 DNA MER1_type -4 215 40 2517 63 0 3 chr11 82126619 82126922 -66656550 - AluY SINE Alu -9 302 1 860 160 63 0 chr11 82128039 82128214 -66655258 + L1MB8 LINE L1 5970 6155 -23 317 194 0 0 chr11 82128491 82128553 -66654919 + L1MB7 LINE L1 6062 6123 -61 2377 52 14 0 chr11 82128553 82128844 -66654628 - AluY SINE Alu -16 295 1 2155 120 3 0 chr11 82128972 82129264 -66654208 - AluSx SINE Alu -19 293 1 22 35 0 0 chr11 82129841 82129870 -66653602 + AT_rich Low_complexity Low_complexity 1 29 0 2074 125 13 10 chr11 82130030 82130333 -66653139 + AluSq SINE Alu 1 304 -9 2194 121 3 3 chr11 82131046 82131344 -66652128 + AluSp SINE Alu 1 298 -15 2537 70 0 0 chr11 82131669 82131971 -66651501 + AluSg SINE Alu 1 302 -8 1688 177 0 33 chr11 82132029 82132328 -66651144 - AluJb SINE Alu -21 291 3 405 202 260 5 chr11 82132367 82132575 -66650897 + L1MC4 LINE L1 7765 8025 -17 2273 88 10 3 chr11 82132575 82132871 -66650601 - AluSx SINE Alu -8 304 7 181 244 113 52 chr11 82133107 82133222 -66650250 + L2 LINE L2 2060 2181 -1133 2266 108 10 0 chr11 82133288 82133594 -66649878 - AluJb SINE Alu -3 309 1 1010 220 37 35 chr11 82133784 82134119 -66649353 + MLT1E2 LTR MaLR 1 388 -238 501 205 0 0 chr11 82134472 82134584 -66648888 + A-rich Low_complexity Low_complexity 1 112 0 420 158 0 0 chr11 82134695 82134771 -66648701 + A-rich Low_complexity Low_complexity 1 76 0 4160 118 8 64 chr11 82135420 82135972 -66647500 + LTR8 LTR ERV1 1 582 -109 2600 45 0 3 chr11 82135972 82136284 -66647188 + AluY SINE Alu 1 311 0 4160 118 8 64 chr11 82136284 82136346 -66647126 + LTR8 LTR ERV1 582 571 -120 2245 76 0 13 chr11 82136346 82136648 -66646824 + AluY SINE Alu 1 298 -13 4160 118 8 64 chr11 82136648 82136764 -66646708 + LTR8 LTR ERV1 570 691 0 614 111 0 0 chr11 82136811 82136901 -66646571 - LTR8 LTR ERV1 0 691 602 2526 58 7 0 chr11 82136901 82137210 -66646262 + AluSp SINE Alu 3 313 0 1786 154 0 63 chr11 82137655 82137987 -66645485 + AluJb SINE Alu 2 312 0 272 227 76 92 chr11 82138197 82138316 -66645156 + MIR3 SINE MIR 50 166 -42 1797 148 14 7 chr11 82138396 82138693 -66644779 - AluSp SINE Alu -14 299 1 23 0 0 0 chr11 82139070 82139093 -66644379 + AT_rich Low_complexity Low_complexity 1 23 0 811 167 8 0 chr11 82139415 82139541 -66643931 + AluJb SINE Alu 137 263 -49 28 29 0 0 chr11 82139694 82139729 -66643743 + AT_rich Low_complexity Low_complexity 1 35 0 837 140 33 0 chr11 82139732 82139882 -66643590 - L1MA3 LINE L1 -12 6293 6139 544 180 45 9 chr11 82140047 82140158 -66643314 - FLAM_A SINE Alu -18 115 1 249 228 106 8 chr11 82140770 82140893 -66642579 - L1ME4a LINE L1 -24 6097 5963 382 199 114 45 chr11 82140992 82141168 -66642304 - L1ME4a LINE L1 -341 5780 5593 22 0 0 0 chr11 82141232 82141254 -66642218 + AT_rich Low_complexity Low_complexity 1 22 0 1136 239 82 29 chr11 82141597 82142082 -66641390 + L1MC4a LINE L1 5468 5978 -143 2173 88 0 0 chr11 82142083 82142355 -66641117 + AluSc SINE Alu 1 272 -37 234 0 0 0 chr11 82142499 82142525 -66640947 + (A)n Simple_repeat Simple_repeat 1 26 0 287 217 152 11 chr11 82145079 82145171 -66638301 - L1ME4a LINE L1 -47 6074 5970 235 237 0 17 chr11 82146024 82146083 -66637389 - Tigger4(Zombi) DNA MER2_type -2644 87 30 22 0 0 0 chr11 82146131 82146153 -66637319 + AT_rich Low_complexity Low_complexity 1 22 0 2353 84 7 0 chr11 82146189 82146485 -66636987 - AluSp SINE Alu -15 298 1 259 139 0 0 chr11 82146828 82146871 -66636601 - L2 LINE L2 0 3313 3271 283 200 53 13 chr11 82146936 82147011 -66636461 + MLT1L LTR MaLR 2 79 -536 643 173 135 0 chr11 82147179 82147312 -66636160 + FRAM SINE Alu 22 172 -4 1917 112 83 0 chr11 82147417 82147694 -66635778 + AluSc SINE Alu 1 300 -9 241 288 24 62 chr11 82147708 82147863 -66635609 + MIR SINE MIR 37 185 -77 1148 121 0 17 chr11 82148094 82148268 -66635204 - L1PA15 LINE L1 -1 6164 5994 210 348 61 0 chr11 82148270 82148385 -66635087 + MIR SINE MIR 124 245 -17 211 404 43 11 chr11 82148546 82148640 -66634832 + L2 LINE L2 3102 3198 -74 264 290 57 34 chr11 82148995 82149171 -66634301 + L1ME4a LINE L1 5386 5565 -556 216 103 0 0 chr11 82149178 82149207 -66634265 - L2 LINE L2 -8 3264 3236 357 268 106 34 chr11 82149228 82149493 -66633979 + L1ME4a LINE L1 5831 6114 -7 1616 171 3 40 chr11 82149570 82149869 -66633603 + AluJb SINE Alu 1 288 -24 222 278 0 0 chr11 82149908 82149962 -66633510 + L2 LINE L2 1534 1587 -1727 * 262 320 104 24 chr11 82149955 82150080 -66633392 - L2 LINE L2 -564 2750 2616 304 253 26 142 chr11 82150095 82150285 -66633187 + L2 LINE L2 2736 2903 -411 424 202 161 36 chr11 82150296 82150464 -66633008 - MER58A DNA MER1_type -7 217 29 936 285 82 19 chr11 82150521 82150889 -66632583 + L2 LINE L2 2923 3313 0 1058 181 0 16 chr11 82151124 82151306 -66632166 - AluJo/FRAM SINE Alu -1 311 133 306 116 0 0 chr11 82151306 82151349 -66632123 - Alu SINE Alu -259 43 1 22 0 0 0 chr11 82151581 82151603 -66631869 + AT_rich Low_complexity Low_complexity 1 22 0 992 122 103 14 chr11 82151604 82151818 -66631654 - L1MA8 LINE L1 -12 6279 6047 547 257 113 40 chr11 82151890 82152525 -66630947 - L1MC5 LINE L1 -477 7484 6630 21 36 0 0 chr11 82152565 82152593 -66630879 + AT_rich Low_complexity Low_complexity 1 28 0 1978 95 14 11 chr11 82152820 82153128 -66630344 + AluSq SINE Alu 1 309 0 3439 209 84 29 chr11 82153145 82153532 -66629940 - L1MC4a LINE L1 -74 7734 7370 2346 100 39 25 chr11 82153532 82153891 -66629581 + THE1B LTR MaLR 1 364 0 3439 209 84 29 chr11 82153891 82154544 -66628928 - L1MC4a LINE L1 -438 7370 6636 552 316 24 20 chr11 82154725 82154978 -66628494 - HAL1b LINE L1 -815 533 280 228 163 0 0 chr11 82155914 82155957 -66627515 + CT-rich Low_complexity Low_complexity 2 44 0 1866 158 14 3 chr11 82155995 82156287 -66627185 + AluJb SINE Alu 1 295 -17 1392 201 29 36 chr11 82156287 82156565 -66626907 + AluJo SINE Alu 14 289 -23 2277 121 0 0 chr11 82156873 82157180 -66626292 - AluSx SINE Alu -5 307 1 957 159 45 0 chr11 82157211 82157368 -66626104 - AluJb SINE Alu -14 298 135 4439 148 46 14 chr11 82157422 82158319 -66625153 + L1MA8 LINE L1 5363 6287 -4 1699 180 30 0 chr11 82158328 82158628 -66624844 + AluJb SINE Alu 1 309 -3 21 0 0 0 chr11 82158644 82158665 -66624807 + AT_rich Low_complexity Low_complexity 1 21 0 273 255 51 20 chr11 82159098 82159196 -66624276 - Charlie8 DNA MER1_type -1106 1311 1211 493 268 171 39 chr11 82159209 82159457 -66624015 - Charlie8 DNA MER1_type -1422 995 781 2362 93 3 0 chr11 82159457 82159759 -66623713 + AluSp SINE Alu 1 303 -10 493 268 171 39 chr11 82159759 82159920 -66623552 - Charlie8 DNA MER1_type -1636 781 532 1123 199 108 54 chr11 82159928 82160279 -66623193 + MLT1A2 LTR MaLR 1 370 -4 1458 186 55 7 chr11 82160399 82160689 -66622783 + AluJo SINE Alu 1 304 -8 358 335 91 14 chr11 82160706 82161002 -66622470 - Charlie8 DNA MER1_type -1955 462 144 1836 158 61 83 chr11 82161047 82161542 -66621930 + L1MB7 LINE L1 5660 6143 -41 862 228 13 31 chr11 82162898 82163122 -66620350 + MIR SINE MIR 20 239 -23 364 290 81 16 chr11 82163122 82163246 -66620226 + L2 LINE L2 3166 3297 -16 189 0 0 0 chr11 82163249 82163270 -66620202 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 1832 164 6 22 chr11 82163323 82163640 -66619832 + AluJo SINE Alu 1 312 0 360 292 175 7 chr11 82163820 82163974 -66619498 + MER5A DNA MER1_type 9 188 -1 740 277 69 9 chr11 82163987 82164218 -66619254 + MIR SINE MIR 18 262 0 1701 159 17 30 chr11 82164609 82164910 -66618562 + AluJo SINE Alu 1 297 -15 3934 149 66 30 chr11 82165484 82166014 -66617458 + L1MB3 LINE L1 5291 5865 -318 2114 127 8 59 chr11 82166014 82166369 -66617103 - MER1B DNA MER1_type 0 337 1 3934 149 66 30 chr11 82166369 82166698 -66616774 + L1MB3 LINE L1 5865 6181 -2 197 83 28 0 chr11 82166941 82166977 -66616495 + (CAAAA)n Simple_repeat Simple_repeat 5 41 0 779 163 16 0 chr11 82167753 82167876 -66615596 - AluJb SINE Alu -30 282 158 242 328 0 0 chr11 82168303 82168361 -66615111 + MIR SINE MIR 90 147 -61 202 347 32 11 chr11 82168524 82168619 -66614853 - MIR3 SINE MIR -1 207 111 22 0 0 0 chr11 82169042 82169064 -66614408 + AT_rich Low_complexity Low_complexity 1 22 0 297 0 0 0 chr11 82169128 82169161 -66614311 + (A)n Simple_repeat Simple_repeat 1 33 0 759 244 74 41 chr11 82169232 82169474 -66613998 - MIR SINE MIR -10 252 3 819 224 89 65 chr11 82169612 82169827 -66613645 - L1ME2 LINE L1 -1 6163 5955 2314 111 28 14 chr11 82169827 82170186 -66613286 + THE1B LTR MaLR 1 364 0 11249 93 21 2 chr11 82170186 82171736 -66611736 + THE1B-int LTR MaLR 1 1580 0 2017 132 45 28 chr11 82171738 82172094 -66611378 + THE1B LTR MaLR 3 364 0 819 224 89 65 chr11 82172094 82172245 -66611227 - L1ME2 LINE L1 -209 5955 5784 1281 245 38 3 chr11 82172248 82172620 -66610852 - L1ME2 LINE L1 -445 5719 5335 1864 179 0 7 chr11 82172794 82173096 -66610376 - AluJb SINE Alu -12 300 1 411 141 14 0 chr11 82173334 82173405 -66610067 - MER116 DNA Mariner -3 77 6 24 32 0 0 chr11 82173512 82173543 -66609929 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr11 82174467 82174488 -66608984 + AT_rich Low_complexity Low_complexity 1 21 0 2289 83 7 10 chr11 82174969 82175270 -66608202 - AluSc SINE Alu -9 300 1 387 319 199 20 chr11 82175424 82175816 -66607656 - L3 LINE CR1 -195 1382 921 1867 165 0 23 chr11 82176403 82176731 -66606741 + AluSx SINE Alu 5 312 0 414 0 0 0 chr11 82176855 82176901 -66606571 + (TG)n Simple_repeat Simple_repeat 2 47 0 942 83 8 0 chr11 82177081 82177202 -66606270 + AluY SINE Alu 1 122 -189 2349 101 0 10 chr11 82177343 82177649 -66605823 - AluSq SINE Alu -10 303 1 469 240 24 0 chr11 82178133 82178258 -66605214 + L1MB7 LINE L1 5761 5888 -286 772 75 9 0 chr11 82178263 82178370 -66605102 + AluSp SINE Alu 1 108 -205 522 136 71 26 chr11 82178370 82178524 -66604948 + GA-rich Low_complexity Low_complexity 5 165 0 932 227 34 4 chr11 82178525 82178763 -66604709 + L1MB7 LINE L1 5878 6122 -62 536 228 70 13 chr11 82178774 82178932 -66604540 - L2 LINE L2 -711 2603 2437 230 270 135 0 chr11 82179128 82179217 -66604255 - L2 LINE L2 -870 2444 2344 1025 75 0 0 chr11 82179743 82179876 -66603596 + AluY SINE Alu 172 304 -7 292 268 41 10 chr11 82179949 82180046 -66603426 - MIR SINE MIR -70 192 93 698 196 196 0 chr11 82180119 82180287 -66603185 - MER2 DNA MER2_type -141 204 4 2028 116 7 13 chr11 82180404 82180705 -66602767 - AluSg SINE Alu -11 299 1 1746 82 0 5 chr11 82180744 82180963 -66602509 - AluSg SINE Alu -92 218 1 2328 98 3 0 chr11 82181818 82182115 -66601357 + AluSp SINE Alu 1 298 -15 1842 136 70 0 chr11 82182985 82183257 -66600215 + AluJb SINE Alu 1 291 -21 4996 155 75 24 chr11 82183293 82184005 -66599467 - L1MA8 LINE L1 0 6291 5514 2401 94 0 0 chr11 82184005 82184302 -66599170 - AluSc SINE Alu -12 297 1 4996 155 75 24 chr11 82184302 82184577 -66598895 - L1MA8 LINE L1 -777 5514 5254 10114 186 43 11 chr11 82184579 82185741 -66597731 - L1MA8 LINE L1 -1101 5045 3922 180 77 0 0 chr11 82185741 82185767 -66597705 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2050 136 0 0 chr11 82185767 82186053 -66597419 - AluSx SINE Alu -26 286 1 1412 168 95 25 chr11 82186055 82186329 -66597143 - AluJo SINE Alu -19 293 1 10114 186 43 11 chr11 82186329 82187283 -66596189 - L1MA8 LINE L1 -2224 3922 2857 282 188 20 141 chr11 82187583 82187732 -66595740 - Charlie7 DNA MER1_type 0 2612 2482 21 0 0 0 chr11 82188714 82188735 -66594737 + AT_rich Low_complexity Low_complexity 1 21 0 1385 160 5 0 chr11 82189941 82190160 -66593312 - AluJb SINE Alu -3 309 90 3450 185 33 5 chr11 82190375 82191041 -66592431 + L1MB7 LINE L1 5480 6164 -20 2208 100 3 0 chr11 82191479 82191770 -66591702 - AluSg SINE Alu -18 292 1 1446 246 34 3 chr11 82191976 82192297 -66591175 - MER58B DNA MER1_type -2 339 9 2265 221 36 34 chr11 82193028 82193613 -66589859 + MER67B LTR ERV1 76 661 0 240 257 14 29 chr11 82193615 82193685 -66589787 - MIR3 SINE MIR -32 176 108 229 282 35 0 chr11 82193699 82193784 -66589688 - L2 LINE L2 -8 3264 3177 1671 233 48 89 chr11 82193788 82194419 -66589053 + LTR9 LTR ERV1 1 605 -7 4217 101 5 11 chr11 82194423 82194980 -66588492 + MER41A LTR ERV1 1 554 0 3447 156 74 24 chr11 82194980 82195220 -66588252 + LTR8A LTR ERV1 3 229 -462 1228 142 122 0 chr11 82195220 82195425 -66588047 - MER30 DNA MER1_type 0 230 1 3447 156 74 24 chr11 82195425 82195866 -66587606 + LTR8A LTR ERV1 229 688 -3 187 307 140 39 chr11 82195866 82196045 -66587427 - L2 LINE L2 -97 3216 3020 903 147 22 7 chr11 82196054 82196190 -66587282 + AluJ SINE Alu 11 148 -164 1404 138 69 85 chr11 82196192 82196497 -66586975 + AluJb SINE Alu 9 308 -4 251 224 0 0 chr11 82196497 82196546 -66586926 + AluSp SINE Alu 119 167 -136 976 188 0 0 chr11 82196546 82196706 -66586766 + AluJ SINE Alu 136 295 -17 885 286 164 42 chr11 82196706 82197230 -66586242 - L2 LINE L2 -425 2889 2302 2154 105 0 0 chr11 82197309 82197586 -66585886 - AluSg SINE Alu -17 293 17 2288 105 3 3 chr11 82197800 82198106 -66585366 + AluSp SINE Alu 1 306 -7 350 239 22 0 chr11 82198122 82198214 -66585258 - MIR SINE MIR -1 261 168 352 257 115 0 chr11 82198214 82198327 -66585145 - L2 LINE L2 -1 3271 3146 284 300 39 131 chr11 82198521 82198911 -66584561 - L2 LINE L2 -15 3257 2904 2439 94 0 0 chr11 82199121 82199430 -66584042 + AluSc SINE Alu 1 309 0 225 320 62 10 chr11 82199479 82199576 -66583896 - L2 LINE L2 -671 2643 2542 1648 170 23 23 chr11 82199577 82199883 -66583589 + AluJo SINE Alu 1 306 -6 2093 211 55 23 chr11 82200067 82200860 -66582612 - L1M3 LINE L1 -413 5767 4962 935 150 7 14 chr11 82200954 82201101 -66582371 + AluJo SINE Alu 3 148 -164 2263 92 0 26 chr11 82201123 82201426 -66582046 + AluSc SINE Alu 1 295 -14 220 286 48 12 chr11 82201466 82201550 -66581922 + MIR SINE MIR 40 126 -136 3122 166 50 26 chr11 82201659 82202304 -66581168 + L1MB7 LINE L1 5509 6168 -16 1953 73 24 112 chr11 82202632 82202962 -66580510 - AluSc SINE Alu -8 301 1 1189 134 0 21 chr11 82203552 82203739 -66579733 - AluJ SINE Alu -10 302 120 237 65 0 0 chr11 82203741 82203772 -66579700 + (T)n Simple_repeat Simple_repeat 1 31 0 580 202 77 0 chr11 82203949 82204053 -66579419 - AluJ SINE Alu -187 115 4 714 223 0 0 chr11 82204215 82204345 -66579127 - FLAM_A SINE Alu -3 130 1 2122 102 0 3 chr11 82204427 82204738 -66578734 - AluSq SINE Alu 0 311 2 566 197 171 25 chr11 82204794 82205033 -66578439 + L1MC5 LINE L1 7630 7903 -58 829 182 18 29 chr11 82205814 82205984 -66577488 - FRAM SINE Alu -8 168 1 1391 181 4 27 chr11 82205999 82206259 -66577213 + AluJo SINE Alu 26 279 -33 192 40 0 0 chr11 82206263 82206288 -66577184 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 608 206 19 0 chr11 82206288 82206395 -66577077 - FLAM_C SINE Alu -33 110 2 2095 99 0 49 chr11 82206786 82206984 -66576488 - AluSq SINE Alu -16 297 118 2135 107 3 10 chr11 82206984 82207292 -66576180 + AluSg SINE Alu 1 306 -4 2095 99 0 49 chr11 82207292 82207397 -66576075 - AluSq SINE Alu -195 118 9 1820 102 114 0 chr11 82207419 82207729 -66575743 - AluSg SINE Alu 0 310 1 403 256 74 25 chr11 82207831 82207952 -66575520 - L2 LINE L2 -9 3263 3137 351 148 0 0 chr11 82208097 82208151 -66575321 - U2 snRNA snRNA -127 61 8 26 0 0 0 chr11 82208448 82208474 -66574998 + AT_rich Low_complexity Low_complexity 1 26 0 390 189 144 45 chr11 82208481 82208592 -66574880 - MER106B DNA MER1_type -908 151 30 426 189 16 82 chr11 82208699 82208821 -66574651 + L1MB4 LINE L1 6067 6180 0 508 157 11 0 chr11 82208824 82208913 -66574559 + L1MB7 LINE L1 6095 6184 0 198 0 0 0 chr11 82209178 82209200 -66574272 + (T)n Simple_repeat Simple_repeat 1 22 0 701 189 24 16 chr11 82209611 82209738 -66573734 - AluJo SINE Alu -96 216 89 260 324 162 6 chr11 82209742 82209915 -66573557 + L2 LINE L2 1923 2122 -1192 1827 123 4 0 chr11 82210001 82210253 -66573219 - AluSx SINE Alu -23 289 37 1033 156 12 0 chr11 82210257 82210417 -66573055 - FRAM SINE Alu -16 160 1 2272 77 42 0 chr11 82210430 82210716 -66572756 - AluSp SINE Alu -15 298 1 293 241 80 18 chr11 82210787 82210899 -66572573 - MLT1L LTR MaLR -26 589 471 450 325 209 48 chr11 82210903 82211238 -66572234 + L2 LINE L2 2876 3264 -8 2251 107 3 0 chr11 82211589 82211888 -66571584 + AluSx SINE Alu 1 300 -12 1182 255 91 9 chr11 82211914 82212151 -66571321 - L1MB7 LINE L1 -155 6029 5813 1993 139 7 14 chr11 82212151 82212445 -66571027 - AluSx SINE Alu -20 292 1 1182 255 91 9 chr11 82212445 82212691 -66570781 - L1MB7 LINE L1 -371 5813 5474 967 219 64 85 chr11 82212682 82213199 -66570273 - L1MB7 LINE L1 -3448 2698 2193 * 236 141 188 16 chr11 82213202 82213266 -66570206 + MER3 DNA MER1_type 135 209 0 232 175 63 16 chr11 82213213 82213276 -66570196 - MER3 DNA MER1_type -106 103 38 * 2101 125 0 0 chr11 82213305 82213602 -66569870 + AluSx SINE Alu 1 297 -15 930 234 75 60 chr11 82213602 82213936 -66569536 + MER58B DNA MER1_type 1 339 -2 2826 270 115 57 chr11 82214008 82214605 -66568867 - L1MEc LINE L1 -4209 2187 1626 2027 140 0 0 chr11 82214605 82214898 -66568574 + AluJo SINE Alu 1 293 -19 2826 270 115 57 chr11 82214898 82216334 -66567138 - L1MEc LINE L1 -4770 1626 35 2323 107 0 0 chr11 82216353 82216651 -66566821 + AluSq SINE Alu 1 298 -15 1989 66 119 31 chr11 82216715 82217001 -66566471 + AluY SINE Alu 1 311 0 35 0 0 0 chr11 82217137 82217172 -66566300 + GC_rich Low_complexity Low_complexity 1 35 0 249 33 0 0 chr11 82217183 82217213 -66566259 + (A)n Simple_repeat Simple_repeat 1 30 0 320 200 200 0 chr11 82217323 82217428 -66566044 - MIR SINE MIR -89 173 48 30 18 0 54 chr11 82217629 82217685 -66565787 + AT_rich Low_complexity Low_complexity 1 53 0 1190 277 84 18 chr11 82218007 82218505 -66564967 + L1MEc LINE L1 38 568 -5828 1284 252 48 3 chr11 82218534 82218844 -66564628 + MER58B DNA MER1_type 3 326 -15 703 264 23 5 chr11 82218846 82219066 -66564406 + L1MEc LINE L1 602 825 -5571 1720 165 3 43 chr11 82219106 82219428 -66564044 + AluJb SINE Alu 4 312 0 22 0 0 0 chr11 82219439 82219461 -66564011 + AT_rich Low_complexity Low_complexity 1 22 0 297 0 0 0 chr11 82219603 82219636 -66563836 + (A)n Simple_repeat Simple_repeat 1 33 0 518 240 51 77 chr11 82219659 82220034 -66563438 + L1MEc LINE L1 810 1174 -5222 251 142 132 85 chr11 82220065 82220171 -66563301 + L1M4 LINE L1 2942 3052 -3094 578 125 135 0 chr11 82220247 82220343 -66563129 + L1 LINE L1 2 110 -6739 525 216 8 52 chr11 82220362 82220496 -66562976 + FLAM_A SINE Alu 13 140 -2 4730 243 59 44 chr11 82220497 82221558 -66561914 + L1 LINE L1 110 1154 -5695 2222 137 57 17 chr11 82221558 82221908 -66561564 - THE1B LTR MaLR 0 364 1 12007 87 31 8 chr11 82221910 82223453 -66560019 - THE1B-int LTR MaLR -2 1578 1 2429 111 48 17 chr11 82223453 82223805 -66559667 - THE1B LTR MaLR 0 364 2 4730 243 59 44 chr11 82223805 82224142 -66559330 + L1 LINE L1 1153 1533 -5316 2520 174 45 53 chr11 82224140 82224656 -66558816 + L1 LINE L1 2401 2920 -3928 * 1782 168 7 19 chr11 82224656 82224965 -66558507 + AluJo SINE Alu 1 305 -7 2520 174 45 53 chr11 82224965 82225100 -66558372 + L1 LINE L1 2920 3055 -3793 1004 106 4 190 chr11 82225100 82225337 -66558135 + 7SK RNA RNA 1 193 0 2520 174 45 53 chr11 82225337 82225858 -66557614 + L1 LINE L1 3055 3561 -3287 812 163 0 7 chr11 82225858 82225999 -66557473 + FLAM_C SINE Alu 1 140 -3 350 234 75 0 chr11 82226006 82226100 -66557372 + L1 LINE L1 3541 3641 -3207 * 5188 177 37 33 chr11 82226095 82227256 -66556216 + L1 LINE L1 4628 5793 -1055 2087 98 29 0 chr11 82227270 82227576 -66555896 - L1P LINE L1 -2589 3557 3243 * 12995 84 10 3 chr11 82227572 82229759 -66553713 + L1P3 LINE L1 3593 5787 -367 2184 123 13 3 chr11 82229759 82230068 -66553404 + AluSx SINE Alu 1 312 0 231 61 0 0 chr11 82230268 82230301 -66553171 + (A)n Simple_repeat Simple_repeat 1 33 0 914 126 7 30 chr11 82230303 82230438 -66553034 + FLAM_C SINE Alu 1 132 -1 263 238 16 16 chr11 82230971 82231034 -66552438 - L2 LINE L2 0 3313 3251 1708 138 4 18 chr11 82231039 82231315 -66552157 + AluJb SINE Alu 34 305 -7 264 30 0 0 chr11 82231920 82231953 -66551519 + (CAA)n Simple_repeat Simple_repeat 2 34 0 1979 95 69 0 chr11 82231983 82232245 -66551227 + AluSx SINE Alu 1 280 -32 1407 148 0 23 chr11 82232270 82232487 -66550985 - AluJo SINE Alu -92 220 9 1991 137 10 0 chr11 82232500 82232792 -66550680 - AluSx SINE Alu -17 295 1 333 0 0 0 chr11 82232853 82232890 -66550582 + (TG)n Simple_repeat Simple_repeat 2 38 0 2202 103 17 13 chr11 82233805 82234106 -66549366 - AluSx SINE Alu -10 302 1 1825 150 0 17 chr11 82234525 82234818 -66548654 - AluJb SINE Alu -24 288 1 181 213 0 120 chr11 82234867 82234942 -66548530 + L2 LINE L2 2423 2488 -826 201 313 165 0 chr11 82235290 82235405 -66548067 + L2 LINE L2 3176 3309 -4 674 224 18 42 chr11 82235488 82235653 -66547819 + MER58A DNA MER1_type 24 184 -40 567 158 126 0 chr11 82235694 82235789 -66547683 + AluJb SINE Alu 190 296 -16 234 200 0 83 chr11 82235791 82235851 -66547621 + MER58A DNA MER1_type 169 223 -1 1140 179 9 45 chr11 82235935 82236159 -66547313 + AluSg/x SINE Alu 85 300 -12 488 241 36 138 chr11 82237420 82237673 -66545799 - MIR SINE MIR -21 241 15 2646 27 0 0 chr11 82237877 82238173 -66545299 + AluYa5 SINE Alu 1 296 -15 184 269 258 21 chr11 82238346 82238439 -66545033 - L2 LINE L2 -31 3241 3127 650 296 73 35 chr11 82238454 82238768 -66544704 + MER102a DNA MER1_type 2 327 -3 322 367 80 13 chr11 82239603 82239829 -66543643 - L3 LINE CR1 -11 1566 1326 194 304 36 0 chr11 82239902 82239958 -66543514 + MIR3 SINE MIR 111 168 -40 575 242 169 11 chr11 82240237 82240415 -66543057 + MIR SINE MIR 25 230 -32 321 151 81 47 chr11 82240566 82240652 -66542820 - MIR SINE MIR -71 191 103 212 197 213 0 chr11 82240752 82240813 -66542659 + MIR SINE MIR 146 219 -43 887 89 15 59 chr11 82240867 82241002 -66542470 - FLAM_C SINE Alu -4 129 1 2324 89 0 0 chr11 82241203 82241494 -66541978 + AluY SINE Alu 6 296 -15 1308 140 153 8 chr11 82243805 82244084 -66539388 + AluJb SINE Alu 14 326 0 233 228 206 0 chr11 82244314 82244394 -66539078 - MIR SINE MIR -85 123 60 244 284 25 25 chr11 82244653 82244734 -66538738 + MIR SINE MIR 114 194 -68 394 232 36 101 chr11 82244771 82244909 -66538563 - L2 LINE L2 -18 3295 3167 1782 165 24 14 chr11 82245028 82245325 -66538147 - AluJb SINE Alu -12 300 1 315 324 9 9 chr11 82245423 82245534 -66537938 + MIR3 SINE MIR 11 121 -87 1758 157 3 23 chr11 82245906 82246212 -66537260 + AluSx SINE Alu 1 300 -12 466 250 176 40 chr11 82246309 82246485 -66536987 + MIR SINE MIR 47 246 -16 449 306 34 20 chr11 82246548 82246695 -66536777 - L2 LINE L2 -221 3051 2903 720 118 0 76 chr11 82246701 82246820 -66536652 - MER1A DNA MER1_type 0 529 420 1276 147 4 4 chr11 82246824 82247056 -66536416 - MER1A DNA MER1_type -215 314 1 231 254 0 0 chr11 82247168 82247231 -66536241 + MIR SINE MIR 168 230 -32 1020 212 28 0 chr11 82247784 82247996 -66535476 + L1MC1 LINE L1 6116 6333 0 677 307 51 24 chr11 82248247 82248543 -66534929 - L3 LINE CR1 -109 1468 1165 2163 130 0 0 chr11 82248602 82248902 -66534570 - AluSq SINE Alu -13 300 1 318 225 56 81 chr11 82248958 82249118 -66534354 + MER103 DNA DNA 3 158 -8 245 372 62 8 chr11 82249751 82249880 -66533592 - L2 LINE L2 -701 2613 2478 1298 130 83 89 chr11 82250866 82251016 -66532456 - MER33 DNA MER1_type -2261 324 175 2395 77 3 3 chr11 82251016 82251315 -66532157 - AluSg SINE Alu -11 299 1 1298 130 83 89 chr11 82251315 82251488 -66531984 - MER33 DNA MER1_type -2410 175 3 943 192 19 34 chr11 82251691 82251899 -66531573 + MER3 DNA MER1_type 1 205 -4 1197 91 0 7 chr11 82251923 82252077 -66531395 - AluSg/x SINE Alu -23 287 135 341 158 0 0 chr11 82252077 82252137 -66531335 - Alu SINE Alu -255 45 1 2145 87 25 0 chr11 82253034 82253334 -66530138 + AluY SINE Alu 1 307 0 247 216 203 0 chr11 82254058 82254132 -66529340 - L1MC4 LINE L1 -12 8030 7942 310 302 245 12 chr11 82254172 82254463 -66529009 - L2 LINE L2 -219 3053 2688 500 210 127 45 chr11 82254469 82254626 -66528846 + L1MC5 LINE L1 7757 7926 -35 364 318 98 0 chr11 82254640 82254772 -66528700 - L2 LINE L2 -618 2696 2552 1729 170 14 14 chr11 82255033 82255327 -66528145 - AluJo SINE Alu -18 294 1 250 236 97 0 chr11 82255475 82255547 -66527925 + MIR3 SINE MIR 126 204 -4 236 250 144 10 chr11 82255597 82255701 -66527771 - MIR3 SINE MIR -2 206 89 198 0 0 0 chr11 82255703 82255725 -66527747 + (A)n Simple_repeat Simple_repeat 1 22 0 2283 88 13 10 chr11 82257265 82257573 -66525899 - AluSg SINE Alu -1 309 1 349 293 109 14 chr11 82258310 82258457 -66525015 - MIR SINE MIR -73 189 29 1929 226 168 2 chr11 82258484 82258983 -66524489 + MER119 DNA MER1_type 2 583 0 183 288 144 34 chr11 82258994 82259112 -66524360 - MIR3 SINE MIR -10 198 68 356 79 48 16 chr11 82261331 82261394 -66522078 + AluJ/FLAM SINE Alu 1 65 -237 313 160 40 27 chr11 82261494 82261569 -66521903 - MLT1L LTR MaLR -539 76 1 261 205 98 45 chr11 82261590 82261702 -66521770 - L1ME4a LINE L1 -1 6120 6003 1624 171 0 10 chr11 82261799 82262098 -66521374 + AluSg SINE Alu 1 296 -14 785 62 10 0 chr11 82262098 82262195 -66521277 + L1PA7 LINE L1 6053 6150 -4 279 312 32 0 chr11 82262411 82262504 -66520968 - L1MC/D LINE L1 -665 5577 5482 1517 155 72 8 chr11 82263056 82263320 -66520152 + AluJo SINE Alu 1 281 -31 219 36 0 0 chr11 82263327 82263355 -66520117 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 501 209 2 2 chr11 82263788 82263891 -66519581 - L1ME1 LINE L1 -56 6106 6004 315 305 39 8 chr11 82264094 82264222 -66519250 + L1ME4a LINE L1 5746 5877 -244 6646 139 24 21 chr11 82264242 82264958 -66518514 - Ricksha_b DNA DNA -1613 1241 445 2019 134 3 13 chr11 82264958 82265257 -66518215 - AluSx SINE Alu -16 296 1 6646 139 24 21 chr11 82265257 82265704 -66517768 - Ricksha_b DNA DNA -2409 445 1 1281 172 27 63 chr11 82265816 82266148 -66517324 + MER33 DNA MER1_type 4 323 -1 532 246 30 8 chr11 82267228 82267362 -66516110 + MIR SINE MIR 16 152 -56 937 107 0 0 chr11 82267362 82267483 -66515989 + AluSq/x SINE Alu 1 121 -192 520 318 81 10 chr11 82267766 82267964 -66515508 - MIR SINE MIR -48 214 3 260 300 118 9 chr11 82268113 82268223 -66515249 - MIR SINE MIR -26 236 115 221 296 0 0 chr11 82269200 82269254 -66514218 + L2 LINE L2 2709 2762 -552 758 254 84 14 chr11 82269398 82269611 -66513861 + MIR SINE MIR 18 245 -17 572 200 140 0 chr11 82269649 82269799 -66513673 + MER104 DNA Tc2 1 171 -9 2216 101 0 7 chr11 82270034 82270330 -66513142 + AluSc SINE Alu 1 294 -15 270 329 109 59 chr11 82270807 82271129 -66512343 - L2 LINE L2 -1 3271 2934 2410 106 0 0 chr11 82271248 82271559 -66511913 + AluSq SINE Alu 1 311 -2 247 100 0 80 chr11 82271636 82271686 -66511786 - Alu SINE Alu -1 299 254 929 192 22 0 chr11 82272480 82272662 -66510810 - Charlie4 DNA MER1_type -16 1945 1760 432 243 97 129 chr11 82272722 82273178 -66510294 + MLT1J1 LTR MaLR 3 443 -3 1811 174 7 0 chr11 82273397 82273691 -66509781 - AluJo SINE Alu -15 297 2 1328 96 25 15 chr11 82273924 82274121 -66509351 - AluSg/x SINE Alu -5 307 109 2320 92 0 0 chr11 82274164 82274457 -66509015 + AluSq SINE Alu 1 293 -20 784 167 8 0 chr11 82274581 82274701 -66508771 + AluJo/FLAM SINE Alu 6 126 -186 1461 148 0 0 chr11 82274702 82274912 -66508560 + AluSx SINE Alu 1 210 -102 3727 48 67 10 chr11 82274912 82275407 -66508065 + LTR17 LTR ERV1 258 780 0 34084 43 13 1 chr11 82275437 82279452 -66504020 + HERV17 LTR ERV1 1953 6019 -2607 286 77 0 0 chr11 82279445 82279484 -66503988 + HERV17 LTR ERV1 7510 7548 -1078 * 2491 51 0 0 chr11 82279474 82279766 -66503706 + HERV17 LTR ERV1 8335 8626 0 2360 47 98 0 chr11 82279766 82280063 -66503409 + LTR17 LTR ERV1 1 326 -454 234 0 0 0 chr11 82280063 82280089 -66503383 + (A)n Simple_repeat Simple_repeat 1 26 0 462 232 5 100 chr11 82280150 82280340 -66503132 + AluJo SINE Alu 89 260 -52 988 91 0 124 chr11 82280352 82280417 -66503055 + L1PA8 LINE L1 6010 6081 -91 2113 102 3 7 chr11 82280417 82280711 -66502761 + AluSg SINE Alu 3 295 -15 988 91 0 124 chr11 82280711 82280831 -66502641 + L1PA8 LINE L1 6081 6172 0 199 203 51 34 chr11 82280846 82280905 -66502567 - MIR3 SINE MIR -1 207 148 183 312 103 92 chr11 82281012 82281294 -66502178 + L2 LINE L2 2907 3191 -81 2199 125 161 5 chr11 82281543 82281910 -66501562 + MSTA LTR MaLR 1 424 -4 8681 155 8 48 chr11 82281916 82282278 -66501194 + MSTA-int LTR MaLR 3 378 -1202 1628 165 3 60 chr11 82282278 82282593 -66500879 - AluSx SINE Alu -15 297 1 8681 155 8 48 chr11 82282593 82282783 -66500689 + MSTA-int LTR MaLR 378 574 -1006 2372 82 0 32 chr11 82282783 82283099 -66500373 + AluY SINE Alu 1 306 -5 8681 155 8 48 chr11 82283099 82284120 -66499352 + MSTA-int LTR MaLR 574 1515 -65 2416 73 0 7 chr11 82284120 82284421 -66499051 + AluY SINE Alu 1 299 -12 8681 155 8 48 chr11 82284421 82284432 -66499040 + MSTA-int LTR MaLR 1515 1525 -55 23 0 0 0 chr11 82284680 82284703 -66498769 + AT_rich Low_complexity Low_complexity 1 23 0 305 61 0 61 chr11 82284861 82284910 -66498562 + MSTA-int LTR MaLR 1535 1580 0 2378 124 134 8 chr11 82284910 82285290 -66498182 + MSTA LTR MaLR 1 428 0 1465 236 42 51 chr11 82285336 82285888 -66497584 + L1MC4a LINE L1 5513 6059 -1749 798 115 14 3 chr11 82285917 82286053 -66497419 + MSTA LTR MaLR 1 144 -220 304 225 29 65 chr11 82286075 82286213 -66497259 + L1MC4a LINE L1 6121 6253 -1555 788 181 84 42 chr11 82286265 82286431 -66497041 - AluJb SINE Alu -1 311 139 332 202 40 73 chr11 82286490 82286614 -66496858 + L1MC4 LINE L1 7916 8035 -7 2343 159 68 0 chr11 82286631 82287026 -66496446 - MSTA LTR MaLR -6 422 1 823 250 98 45 chr11 82287197 82287266 -66496206 + L1MC4 LINE L1 7689 7753 -289 2489 70 0 0 chr11 82287266 82287565 -66495907 + AluSg1 SINE Alu 1 299 -10 823 250 98 45 chr11 82287565 82287702 -66495770 + L1MC4 LINE L1 7753 7881 -161 408 71 0 0 chr11 82287702 82287758 -66495714 + (TG)n Simple_repeat Simple_repeat 2 57 0 823 250 98 45 chr11 82287758 82287886 -66495586 + L1MC4 LINE L1 7881 8042 0 259 360 20 10 chr11 82288099 82288199 -66495273 + MIR SINE MIR 2 102 -160 267 370 169 53 chr11 82288447 82288785 -66494687 - L2 LINE L2 -8 3264 2888 1530 166 4 40 chr11 82288891 82288996 -66494476 + AluJb SINE Alu 31 138 -174 2172 115 3 10 chr11 82288996 82289309 -66494163 + AluSx SINE Alu 1 311 -1 1530 166 4 40 chr11 82289309 82289481 -66493991 + AluJb SINE Alu 138 298 -14 1030 197 5 32 chr11 82289481 82289699 -66493773 + AluJo SINE Alu 55 266 -46 234 251 81 84 chr11 82289729 82289859 -66493613 + MIR SINE MIR 16 141 -104 2217 98 3 7 chr11 82289859 82290155 -66493317 + AluSx SINE Alu 1 295 -17 234 251 81 84 chr11 82290155 82290198 -66493274 + MIR SINE MIR 141 183 -62 1263 220 97 25 chr11 82290345 82290765 -66492707 + MLT2B1 LTR ERVL 3 414 0 600 244 142 6 chr11 82291153 82291329 -66492143 + L1MEd LINE L1 18 217 -5902 753 287 28 57 chr11 82291376 82291728 -66491744 + L1MEd LINE L1 380 721 -5398 2063 81 4 0 chr11 82291801 82292059 -66491413 - AluSp SINE Alu -19 294 36 763 165 0 8 chr11 82292061 82292182 -66491290 - AluSq/x SINE Alu -193 120 1 3311 190 60 54 chr11 82292287 82292791 -66490681 + L1M4 LINE L1 821 1320 -5326 1978 136 10 23 chr11 82292791 82293101 -66490371 + AluSx SINE Alu 1 306 -6 3311 190 60 54 chr11 82293101 82293670 -66489802 + L1M4 LINE L1 1320 1916 -4730 329 161 25 37 chr11 82293776 82293857 -66489615 + L1M4b LINE L1 89 168 -6691 1683 188 13 3 chr11 82293857 82294165 -66489307 + AluJo SINE Alu 1 311 -1 1410 230 21 45 chr11 82294183 82294409 -66489063 + MLT1A1 LTR MaLR 1 216 -149 2467 123 28 17 chr11 82294409 82294766 -66488706 + THE1B LTR MaLR 1 361 -3 1410 230 21 45 chr11 82294766 82294913 -66488559 + MLT1A1 LTR MaLR 216 365 0 807 325 33 11 chr11 82294974 82295245 -66488227 + L1M4b LINE L1 228 504 -6355 1174 188 28 67 chr11 82295252 82295791 -66487681 + L1MB8 LINE L1 5413 6167 -11 357 248 90 59 chr11 82296316 82296538 -66486934 + L1M4 LINE L1 8 236 -6306 233 358 17 17 chr11 82296972 82297092 -66486380 + L1M4 LINE L1 756 875 -5667 1563 191 97 38 chr11 82297214 82297585 -66485887 + MSTD LTR MaLR 1 393 -3 404 172 20 10 chr11 82297694 82297793 -66485679 + L1M4 LINE L1 1018 1117 -5429 761 179 0 0 chr11 82297810 82297927 -66485545 + AluJo SINE Alu 1 117 -185 2250 92 0 0 chr11 82297977 82298261 -66485211 - AluSx SINE Alu -17 295 12 207 0 0 0 chr11 82298398 82298421 -66485051 + (TG)n Simple_repeat Simple_repeat 2 24 0 4895 98 6 2 chr11 82298542 82299175 -66484297 - L1PA10 LINE L1 -16 6152 5517 1093 157 0 31 chr11 82299177 82299368 -66484104 + AluJo SINE Alu 104 288 -24 363 266 147 11 chr11 82299415 82299592 -66483880 + L1M4 LINE L1 1151 1351 -5195 2427 77 0 0 chr11 82299604 82299903 -66483569 + AluY SINE Alu 2 300 -11 1632 194 56 41 chr11 82299909 82300300 -66483172 - MLT2C1 LTR ERVL 0 397 1 490 209 19 0 chr11 82300300 82300405 -66483067 - ERVL-C1 LTR ERVL -8 5756 5650 1302 197 33 11 chr11 82300446 82300604 -66482868 - AluJo SINE Alu -30 282 114 207 0 0 0 chr11 82300604 82300627 -66482845 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1302 197 33 11 chr11 82300627 82300742 -66482730 - AluJo SINE Alu -198 114 3 1908 117 72 0 chr11 82300783 82301075 -66482397 + AluSx SINE Alu 1 311 0 2228 102 0 13 chr11 82301083 82301397 -66482075 + AluSg SINE Alu 1 310 0 2335 85 3 0 chr11 82301540 82301835 -66481637 - AluSp SINE Alu -17 296 1 1647 203 44 34 chr11 82301921 82302305 -66481167 - MLT1B LTR MaLR -2 388 1 204 200 0 0 chr11 82302387 82302422 -66481050 - L2 LINE L2 -16 3297 3263 368 313 0 26 chr11 82302455 82302570 -66480902 - MIR SINE MIR -148 114 3 2005 123 43 7 chr11 82302582 82302882 -66480590 - AluSx SINE Alu -1 311 1 826 298 87 38 chr11 82303057 82303450 -66480022 - MLT1J LTR MaLR -40 471 60 1782 119 108 7 chr11 82303804 82304081 -66479391 + AluSg SINE Alu 1 305 -5 2829 139 5 5 chr11 82304882 82305292 -66478180 + MER1A DNA MER1_type 1 410 -119 1349 149 9 5 chr11 82305292 82305507 -66477965 + AluSg/x SINE Alu 86 301 -11 216 0 0 0 chr11 82305524 82305548 -66477924 + (CA)n Simple_repeat Simple_repeat 1 24 0 405 0 0 0 chr11 82305692 82305737 -66477735 + (CA)n Simple_repeat Simple_repeat 2 46 0 705 157 41 8 chr11 82305749 82305870 -66477602 + MER1A DNA MER1_type 409 533 0 2360 78 3 0 chr11 82306064 82306359 -66477113 + AluSp SINE Alu 1 296 -17 217 338 63 7 chr11 82306533 82306675 -66476797 - L2 LINE L2 -471 2843 2694 1003 104 0 8 chr11 82306679 82306813 -66476659 + AluSq/x SINE Alu 1 133 -179 1969 133 3 3 chr11 82307049 82307367 -66476105 - AluJb SINE Alu 0 318 1 763 251 37 0 chr11 82307458 82307645 -66475827 + HsTC2 DNA Tc2 135 328 -1570 532 193 88 18 chr11 82307642 82307813 -66475659 + HsTC2 DNA Tc2 1717 1899 0 * 2238 110 0 0 chr11 82307965 82308275 -66475197 - AluSx SINE Alu -2 310 1 1936 112 26 20 chr11 82308275 82308578 -66474894 - AluSx SINE Alu -5 307 3 2374 83 0 7 chr11 82308813 82309115 -66474357 - AluSx SINE Alu -12 300 1 234 250 129 48 chr11 82310323 82310447 -66473025 - MIR SINE MIR -66 196 63 214 336 168 8 chr11 82310761 82310880 -66472592 - MER5A DNA MER1_type -6 183 46 454 145 12 1 chr11 82311028 82311119 -66472353 - L1MB3 LINE L1 -21 6162 6060 196 297 122 0 chr11 82311918 82311992 -66471480 - MIR SINE MIR -179 83 1 21 0 0 0 chr11 82312091 82312112 -66471360 + AT_rich Low_complexity Low_complexity 1 21 0 926 105 0 8 chr11 82312112 82312236 -66471236 - AluJb SINE Alu -185 127 5 1843 160 24 0 chr11 82312244 82312538 -66470934 - AluSq SINE Alu -7 306 6 1052 183 16 0 chr11 82312570 82312756 -66470716 + AluSx SINE Alu 36 224 -88 712 215 15 0 chr11 82312760 82312890 -66470582 + AluSg/x SINE Alu 155 286 -23 973 115 8 0 chr11 82312971 82313101 -66470371 + FLAM_C SINE Alu 1 131 -2 359 289 80 24 chr11 82313102 82313227 -66470245 - MIR SINE MIR -63 145 18 230 276 187 45 chr11 82313638 82313772 -66469700 - L2 LINE L2 -4 3268 3116 1784 135 0 35 chr11 82313953 82314264 -66469208 - AluSx SINE Alu -12 300 1 836 186 26 0 chr11 82314274 82314430 -66469042 - AluJo/FRAM SINE Alu -25 287 128 1716 163 23 20 chr11 82314432 82314732 -66468740 - AluSx SINE Alu -11 301 1 1289 195 10 54 chr11 82314738 82315063 -66468409 - AluJb SINE Alu 0 312 1 263 280 11 11 chr11 82315079 82315172 -66468300 - L1MC5 LINE L1 -61 7900 7808 1902 113 99 0 chr11 82315182 82315465 -66468007 - AluSx SINE Alu -1 311 1 497 261 104 56 chr11 82315637 82316031 -66467441 - L1MC5 LINE L1 -306 7655 7243 588 273 71 49 chr11 82316042 82316309 -66467163 + L2 LINE L2 3041 3313 0 290 304 87 29 chr11 82316410 82316548 -66466924 + L2 LINE L2 3112 3257 -15 22 0 0 0 chr11 82316601 82316623 -66466849 + AT_rich Low_complexity Low_complexity 1 22 0 999 150 0 0 chr11 82316656 82316796 -66466676 - AluJb SINE Alu -171 141 2 1533 177 24 28 chr11 82316799 82317087 -66466385 - AluJo SINE Alu -25 287 1 365 246 159 14 chr11 82317260 82317398 -66466074 - MIR SINE MIR -50 212 55 625 193 7 139 chr11 82317398 82317678 -66465794 - L1MC5 LINE L1 -23 7938 7696 * 6540 52 4 0 chr11 82317672 82318463 -66465009 - L1PA6 LINE L1 -1 6153 5360 288 357 84 54 chr11 82318938 82319367 -66464105 - L2 LINE L2 0 3272 2831 214 365 66 7 chr11 82319418 82319555 -66463917 - L2 LINE L2 -604 2710 2566 203 188 0 21 chr11 82319730 82319778 -66463694 + T-rich Low_complexity Low_complexity 1 47 0 879 199 43 0 chr11 82319784 82319945 -66463527 - AluJb SINE Alu -12 300 133 3756 128 23 21 chr11 82319947 82320156 -66463316 - L1MB3 LINE L1 -1 6182 5975 2056 131 0 13 chr11 82320156 82320461 -66463011 - AluSx SINE Alu -11 301 1 3756 128 23 21 chr11 82320461 82320863 -66462609 - L1MB3 LINE L1 -208 5975 5570 300 29 0 0 chr11 82320863 82320898 -66462574 - U2 snRNA snRNA -153 35 1 1824 146 35 3 chr11 82320900 82321215 -66462257 - L1MB3 LINE L1 -597 5586 5262 313 102 0 234 chr11 82321221 82321272 -66462200 + L1 LINE L1 3042 3047 -3099 644 137 118 0 chr11 82321272 82321374 -66462098 + FLAM_C SINE Alu 5 118 -15 313 102 0 234 chr11 82321374 82321450 -66462022 + L1 LINE L1 3047 3139 -3007 408 226 265 22 chr11 82321462 82321643 -66461829 - MIR SINE MIR -18 244 20 283 279 38 0 chr11 82321943 82322022 -66461450 - L2 LINE L2 -6 3307 3226 634 315 7 52 chr11 82322087 82322234 -66461238 + LTR67 LTR ERVL 80 209 -348 1879 166 7 7 chr11 82322234 82322535 -66460937 + AluJo SINE Alu 1 301 -11 634 315 7 52 chr11 82322535 82322676 -66460796 + LTR67 LTR ERVL 209 355 -202 483 153 14 0 chr11 82322821 82322932 -66460540 + AluSg/x SINE Alu 210 321 0 198 128 0 0 chr11 82323462 82323501 -66459971 + (T)n Simple_repeat Simple_repeat 1 39 0 2334 71 7 10 chr11 82323667 82323962 -66459510 - AluY SINE Alu -17 294 1 1667 180 6 16 chr11 82323990 82324301 -66459171 + AluJo SINE Alu 1 308 -4 2433 83 0 10 chr11 82324654 82324976 -66458496 - AluSg SINE Alu 0 319 1 1715 171 3 16 chr11 82325177 82325482 -66457990 - AluJb SINE Alu -11 301 1 354 353 70 1 chr11 82325877 82326101 -66457371 - MIR SINE MIR -16 246 11 2170 128 3 10 chr11 82326479 82326792 -66456680 + AluSx SINE Alu 1 311 -1 28 61 0 0 chr11 82326942 82326991 -66456481 + AT_rich Low_complexity Low_complexity 1 49 0 303 259 122 27 chr11 82326991 82327138 -66456334 - L1ME4a LINE L1 -5 6116 5956 292 327 104 8 chr11 82327265 82327525 -66455947 - L1ME4a LINE L1 -218 5903 5619 185 0 40 0 chr11 82327549 82327574 -66455898 + (TTTTTA)n Simple_repeat Simple_repeat 3 28 0 5073 35 0 0 chr11 82327584 82328149 -66455323 - L1PA4 LINE L1 -3 6152 5588 798 169 0 0 chr11 82328152 82328270 -66455202 - FLAM_C SINE Alu -15 118 1 487 260 68 68 chr11 82328368 82328649 -66454823 - L1ME4a LINE L1 -520 5601 5321 2436 65 0 3 chr11 82328703 82328995 -66454477 - AluSc SINE Alu -18 291 1 5497 199 41 76 chr11 82329219 82329772 -66453700 + L1MB8 LINE L1 2770 3341 -2805 1665 186 10 0 chr11 82329772 82330068 -66453404 + AluJb SINE Alu 2 300 -12 5497 199 41 76 chr11 82330068 82330130 -66453342 + L1MB8 LINE L1 3341 3404 -2742 2555 87 0 0 chr11 82330130 82330440 -66453032 + AluSg SINE Alu 1 310 0 5497 199 41 76 chr11 82330440 82331526 -66451946 + L1MB8 LINE L1 3404 4413 -1733 1382 199 3 61 chr11 82331526 82331853 -66451619 + AluJo SINE Alu 1 308 -4 5497 199 41 76 chr11 82331853 82331875 -66451597 + L1MB8 LINE L1 4413 4434 -1712 2260 196 73 106 chr11 82331876 82331956 -66451516 + L1MB8 LINE L1 4748 4829 -1349 2349 101 0 0 chr11 82331956 82332252 -66451220 + AluSx SINE Alu 3 298 -14 2260 196 73 106 chr11 82332252 82332272 -66451200 + L1MB8 LINE L1 4829 4848 -1330 1924 171 0 3 chr11 82332272 82332582 -66450890 + AluJb SINE Alu 1 309 -3 2260 196 73 106 chr11 82332582 82333006 -66450466 + L1MB8 LINE L1 4848 5284 -894 1925 127 30 13 chr11 82333006 82333305 -66450167 - AluSx SINE Alu -8 304 1 2260 196 73 106 chr11 82333305 82333563 -66449909 + L1MB8 LINE L1 5284 5549 -629 2124 114 13 3 chr11 82333563 82333861 -66449611 + AluSq SINE Alu 1 301 -12 2260 196 73 106 chr11 82333861 82333911 -66449561 + L1MB8 LINE L1 5549 5599 -579 1508 132 0 5 chr11 82333911 82334123 -66449349 - AluJb SINE Alu -99 213 3 2260 196 73 106 chr11 82334123 82334262 -66449210 + L1MB8 LINE L1 5599 5741 -437 2140 115 7 7 chr11 82334262 82334557 -66448915 - AluSx SINE Alu -17 295 1 2260 196 73 106 chr11 82334557 82334998 -66448474 + L1MB8 LINE L1 5741 6115 -63 1499 198 29 4 chr11 82334998 82335271 -66448201 + AluJo SINE Alu 1 280 -32 245 127 36 0 chr11 82335278 82335333 -66448139 + (CATA)n Simple_repeat Simple_repeat 1 57 0 309 149 30 30 chr11 82335359 82335426 -66448046 + L1MB8 LINE L1 6111 6177 -1 2067 117 34 3 chr11 82335437 82335735 -66447737 + AluSx SINE Alu 1 307 -5 567 151 0 50 chr11 82335767 82335886 -66447586 - L1M4 LINE L1 -426 5748 5636 522 193 9 0 chr11 82335883 82335992 -66447480 - L1M4 LINE L1 -474 5700 5591 * 2247 174 3 5 chr11 82335995 82336380 -66447092 - L1MB3 LINE L1 -7 6176 5793 2440 122 14 9 chr11 82336457 82336802 -66446670 + MER7A DNA MER2_type 1 345 -1 1352 195 52 0 chr11 82336804 82337111 -66446361 - L1MC4 LINE L1 -399 7643 7321 333 93 37 0 chr11 82337119 82337173 -66446299 + L1M3 LINE L1 5595 5650 -533 982 216 122 47 chr11 82337173 82337451 -66446021 - MLT1A2 LTR MaLR -8 366 68 1292 150 65 37 chr11 82337516 82337762 -66445710 + L1M3 LINE L1 5344 5596 -587 5035 157 60 27 chr11 82337762 82339325 -66444147 + L1MA7 LINE L1 4521 6138 -153 1557 172 47 11 chr11 82339325 82339604 -66443868 + AluJo SINE Alu 6 294 -18 5035 157 60 27 chr11 82339604 82339741 -66443731 + L1MA7 LINE L1 6138 6269 -22 540 172 43 9 chr11 82339767 82339883 -66443589 - L1MC4 LINE L1 -740 7302 7183 251 167 12 36 chr11 82339898 82339982 -66443490 + CT-rich Low_complexity Low_complexity 1 82 0 27 0 0 26 chr11 82340048 82340070 -66443402 + AT_rich Low_complexity Low_complexity 1 23 -14 2431 73 0 22 chr11 82340070 82340386 -66443086 - AluY SINE Alu -2 309 1 27 0 0 26 chr11 82340386 82340401 -66443071 + AT_rich Low_complexity Low_complexity 23 37 0 1427 181 0 8 chr11 82340743 82340986 -66442486 + AluJb SINE Alu 57 297 -15 27 62 0 0 chr11 82341067 82341115 -66442357 + AT_rich Low_complexity Low_complexity 1 48 0 356 119 17 0 chr11 82341300 82341359 -66442113 - Alu SINE Alu 0 300 241 1249 131 30 15 chr11 82341657 82341855 -66441617 - AluSg/x SINE Alu -27 285 85 533 266 113 5 chr11 82341906 82342109 -66441363 - MER112 DNA MER1_type -32 228 4 2160 240 77 34 chr11 82342256 82342380 -66441092 + L1ME3A LINE L1 5467 5584 -586 1580 149 123 8 chr11 82342380 82342641 -66440831 - AluJb SINE Alu -10 292 2 2160 240 77 34 chr11 82342641 82343170 -66440302 + L1ME3A LINE L1 5584 6148 -22 288 77 0 0 chr11 82343490 82343529 -66439943 + (T)n Simple_repeat Simple_repeat 1 39 0 429 279 259 30 chr11 82344448 82344753 -66438719 + L3 LINE CR1 805 1179 -398 279 313 54 27 chr11 82345267 82345414 -66438058 - L2 LINE L2 -954 2360 2210 285 345 36 28 chr11 82346052 82346205 -66437267 + MIR3 SINE MIR 20 173 -51 52 64 0 0 chr11 82346386 82346480 -66436992 + AT_rich Low_complexity Low_complexity 1 94 0 2246 106 13 7 chr11 82346710 82347012 -66436460 + AluSx SINE Alu 3 306 -6 1699 170 0 4 chr11 82347113 82347389 -66436083 - AluSx SINE Alu -20 292 18 1766 160 11 7 chr11 82347442 82347729 -66435743 + AluJb SINE Alu 3 290 -22 2103 123 0 3 chr11 82347912 82348247 -66435225 - AluSx SINE Alu 0 336 3 1803 184 0 7 chr11 82348253 82348547 -66434925 - AluJb SINE Alu -20 292 1 204 97 0 0 chr11 82348747 82348778 -66434694 + (TATG)n Simple_repeat Simple_repeat 2 32 0 636 172 30 104 chr11 82348782 82348880 -66434592 - FLAM_C SINE Alu -187 125 38 2256 94 0 7 chr11 82348880 82349177 -66434295 + AluSc SINE Alu 1 295 -14 636 172 30 104 chr11 82349177 82349212 -66434260 - FLAM_C SINE Alu -274 38 2 1860 169 10 0 chr11 82349314 82349616 -66433856 - AluJb SINE Alu -7 305 1 259 281 0 105 chr11 82349776 82349806 -66433666 - MIR SINE MIR -12 250 218 2009 187 21 9 chr11 82349806 82350138 -66433334 + MER1B DNA MER1_type 1 336 -1 259 281 0 105 chr11 82350138 82350221 -66433251 - MIR SINE MIR -44 218 149 816 139 0 47 chr11 82350228 82350357 -66433115 + FLAM_C SINE Alu 5 127 -16 39 0 0 0 chr11 82350357 82350396 -66433076 + AT_rich Low_complexity Low_complexity 1 39 0 337 294 33 2 chr11 82350403 82350529 -66432943 - MIR SINE MIR -64 144 16 1821 62 0 0 chr11 82350574 82350784 -66432688 + AluSc SINE Alu 12 221 -88 2198 120 0 0 chr11 82350796 82351087 -66432385 + AluSx SINE Alu 6 296 -16 344 255 35 50 chr11 82351151 82351292 -66432180 + MIR SINE MIR 78 216 -46 210 269 0 26 chr11 82352142 82352220 -66431252 + (CATA)n Simple_repeat Simple_repeat 1 76 0 268 341 116 0 chr11 82352243 82352372 -66431100 - MIR SINE MIR -67 195 52 28 0 0 0 chr11 82352552 82352580 -66430892 + AT_rich Low_complexity Low_complexity 1 28 0 5123 37 0 0 chr11 82352582 82353379 -66430093 - L1PA4 LINE L1 -585 5570 4774 5046 42 0 2 chr11 82353379 82353952 -66429520 + L1PA4 LINE L1 5579 6154 -1 1780 187 112 30 chr11 82353956 82354301 -66429171 - L1MA6 LINE L1 -10 6290 5902 7556 54 7 0 chr11 82354301 82355449 -66428023 - L1PA7 LINE L1 0 6154 4998 1780 187 112 30 chr11 82355449 82355531 -66427941 - L1MA6 LINE L1 -398 5902 5828 605 139 0 82 chr11 82355531 82355653 -66427819 - FRAM SINE Alu -3 173 62 455 204 28 0 chr11 82355694 82355802 -66427670 - L1M4c LINE L1 -3101 4464 4354 312 239 0 0 chr11 82355800 82355871 -66427601 - L1M4c LINE L1 -3897 3668 3598 * 298 97 0 65 chr11 82355871 82355933 -66427539 - Alu SINE Alu 0 302 245 1988 147 6 6 chr11 82355998 82356310 -66427162 - AluSx SINE Alu 0 312 1 612 265 59 38 chr11 82356310 82356531 -66426941 - L1M4c LINE L1 -3993 3572 3357 1699 182 7 17 chr11 82356531 82356828 -66426644 + AluJb SINE Alu 6 299 -13 612 265 59 38 chr11 82356828 82357165 -66426307 - L1M4c LINE L1 -4208 3357 3006 4213 264 105 52 chr11 82357167 82357894 -66425578 - L1M4c LINE L1 -4464 3102 2415 1861 172 3 0 chr11 82357894 82358197 -66425275 - AluJb SINE Alu -8 304 1 4213 264 105 52 chr11 82358197 82359736 -66423736 - L1M4c LINE L1 -5151 2415 794 1378 125 50 67 chr11 82359756 82359806 -66423666 - MER46A DNA MER2_type -2495 236 187 195 42 0 0 chr11 82359806 82359830 -66423642 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1378 125 50 67 chr11 82359830 82360019 -66423453 - MER46A DNA MER2_type -2544 187 1 290 281 37 12 chr11 82360165 82360247 -66423225 - L2 LINE L2 -220 3052 2969 205 319 56 28 chr11 82361205 82361349 -66422123 + L2 LINE L2 2476 2623 -691 263 329 74 34 chr11 82361938 82362087 -66421385 + L2 LINE L2 2613 2767 -547 * 277 309 122 7 chr11 82362059 82362198 -66421274 + MIR SINE MIR 92 246 -16 229 204 0 0 chr11 82362602 82362646 -66420826 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 814 240 63 14 chr11 82362650 82362871 -66420601 + MIR SINE MIR 3 234 -28 1922 98 0 127 chr11 82362871 82363218 -66420254 + AluY SINE Alu 1 303 -8 2008 124 10 19 chr11 82363742 82364056 -66419416 + AluSx SINE Alu 1 311 -1 1793 188 0 7 chr11 82364227 82364530 -66418942 - AluJo SINE Alu -11 301 1 1237 119 6 6 chr11 82364790 82365010 -66418462 - AluJb SINE Alu 0 324 105 1941 74 124 4 chr11 82365224 82365482 -66417990 - AluSc SINE Alu -10 289 1 454 303 21 21 chr11 82366040 82366185 -66417287 - MIR SINE MIR -1 261 117 342 235 74 74 chr11 82366235 82366384 -66417088 + MIR SINE MIR 112 260 -2 254 221 73 29 chr11 82366404 82366472 -66417000 - MIR SINE MIR -158 104 34 663 233 75 140 chr11 82366472 82366530 -66416942 - L1MEc LINE L1 -4726 1670 1610 1899 135 3 14 chr11 82366530 82366860 -66416612 + AluSq SINE Alu 1 327 0 663 233 75 140 chr11 82366860 82366902 -66416570 - L1MEc LINE L1 -4786 1610 1567 1856 172 0 29 chr11 82366902 82367216 -66416256 - AluJo SINE Alu -7 305 1 663 233 75 140 chr11 82367216 82367522 -66415950 - L1MEc LINE L1 -4829 1567 1325 1799 148 0 0 chr11 82367522 82367785 -66415687 - AluSq SINE Alu -50 263 1 663 233 75 140 chr11 82367785 82368080 -66415392 - L1MEc LINE L1 -5071 1325 1012 1363 158 5 0 chr11 82368080 82368295 -66415177 + AluJo SINE Alu 85 300 -12 2335 224 116 71 chr11 82368295 82368760 -66414712 - L1MEc LINE L1 -5373 1023 580 1880 184 0 0 chr11 82368760 82369064 -66414408 - AluJb SINE Alu -8 304 1 2335 224 116 71 chr11 82369064 82369528 -66413944 - L1MEc LINE L1 -5816 580 52 214 346 40 0 chr11 82369600 82369701 -66413771 - MIR3 SINE MIR -38 170 66 26 0 0 0 chr11 82370047 82370073 -66413399 + AT_rich Low_complexity Low_complexity 1 26 0 8712 67 141 10 chr11 82370266 82371491 -66411981 - SVA Other Other 0 1386 1 1945 64 16 16 chr11 82371565 82371816 -66411656 - L1PA7 LINE L1 -4 6150 5900 180 0 0 0 chr11 82372321 82372341 -66411131 + (C)n Simple_repeat Simple_repeat 1 20 0 216 0 0 0 chr11 82372370 82372394 -66411078 + (A)n Simple_repeat Simple_repeat 1 24 0 2262 112 7 0 chr11 82372566 82372870 -66410602 - AluSx SINE Alu -6 306 1 30 0 0 0 chr11 82372870 82372900 -66410572 + AT_rich Low_complexity Low_complexity 1 30 0 411 254 0 26 chr11 82373116 82373230 -66410242 + MER5B DNA MER1_type 18 128 -50 393 183 26 79 chr11 82373312 82373491 -66409981 - L1M4 LINE L1 -3783 2599 2435 236 277 157 0 chr11 82373914 82373997 -66409475 + L2 LINE L2 3174 3269 -3 1000 185 35 52 chr11 82374211 82374443 -66409029 - AluJo SINE Alu 0 312 85 193 280 113 75 chr11 82374741 82375113 -66408359 - L2 LINE L2 -585 2729 2344 1743 121 111 0 chr11 82375447 82375727 -66407745 - AluSx SINE Alu -1 311 1 1779 164 25 0 chr11 82376081 82376362 -66407110 - AluJb SINE Alu -24 288 1 1098 236 76 105 chr11 82376487 82376830 -66406642 - MER21B LTR ERV1 -212 651 300 1652 176 42 7 chr11 82376830 82377119 -66406353 - AluJo SINE Alu -13 299 1 1098 236 76 105 chr11 82377119 82377131 -66406341 - MER21B LTR ERV1 -563 300 289 2189 111 3 0 chr11 82377131 82377420 -66406052 - AluSx SINE Alu -22 290 1 1098 236 76 105 chr11 82377420 82377470 -66406002 - MER21B LTR ERV1 -574 289 239 1862 166 3 0 chr11 82377470 82377759 -66405713 + AluJb SINE Alu 1 290 -22 1098 236 76 105 chr11 82377759 82377876 -66405596 - MER21B LTR ERV1 -624 239 142 311 211 0 0 chr11 82377876 82377933 -66405539 - L1M4 LINE L1 -2342 3804 3748 340 185 15 0 chr11 82377934 82378013 -66405459 - Alu SINE Alu 0 302 238 2222 83 3 28 chr11 82378076 82378366 -66405106 + AluSq SINE Alu 11 293 -20 1436 233 60 40 chr11 82378421 82378841 -66404631 - MER21B LTR ERV1 -52 811 384 812 156 0 8 chr11 82378905 82379033 -66404439 - FLAM_C SINE Alu -16 127 1 1028 202 103 29 chr11 82379048 82379291 -66404181 - MER21B LTR ERV1 -556 307 47 350 246 0 0 chr11 82379307 82379376 -66404096 - MER21B LTR ERV1 -776 87 19 * 415 182 10 91 chr11 82379374 82379473 -66403999 - MER21B LTR ERV1 -757 106 16 2002 131 3 10 chr11 82379473 82379771 -66403701 - AluSx SINE Alu -16 296 1 394 156 0 94 chr11 82379794 82379890 -66403582 - L1M4 LINE L1 -2489 3657 3571 673 226 55 49 chr11 82379890 82380054 -66403418 - AluJb SINE Alu -16 296 132 1298 213 37 0 chr11 82380057 82380329 -66403143 - AluJo SINE Alu -30 282 1 393 114 71 0 chr11 82380330 82380400 -66403072 - L1M4 LINE L1 -2569 3577 3503 2174 127 0 0 chr11 82380404 82380703 -66402769 - AluSx SINE Alu -9 303 5 720 225 0 31 chr11 82380728 82380888 -66402584 - FAM SINE Alu 0 49 1 916 263 44 3 chr11 82380893 82381209 -66402263 - L1M4 LINE L1 -2633 3513 3185 698 225 95 0 chr11 82381209 82381378 -66402094 + L1MB7 LINE L1 5909 6093 -91 * 800 198 11 76 chr11 82381375 82381395 -66402077 - L1 LINE L1 -801 5345 5325 1856 146 27 7 chr11 82381395 82381689 -66401783 - AluJb SINE Alu -12 300 1 800 198 11 76 chr11 82381689 82381931 -66401541 - L1 LINE L1 -821 5325 5100 276 73 0 0 chr11 82381931 82381942 -66401530 + (T)n Simple_repeat Simple_repeat 1 11 -30 2680 75 75 0 chr11 82381942 82382301 -66401171 - L1PA7 LINE L1 0 6154 5769 276 73 0 0 chr11 82382301 82382330 -66401142 + (T)n Simple_repeat Simple_repeat 10 41 0 945 134 0 40 chr11 82382432 82382581 -66400891 - FLAM_C SINE Alu 0 143 1 593 136 32 28 chr11 82382582 82382731 -66400741 - L1M4 LINE L1 -718 5452 5294 2395 136 18 48 chr11 82382783 82383218 -66400254 - LTR3 LTR ERVK -10 422 1 1621 184 30 20 chr11 82383289 82383588 -66399884 - AluJo SINE Alu -8 304 3 1547 206 35 15 chr11 82383635 82384033 -66399439 - L1M4 LINE L1 -954 5192 4787 1389 202 46 60 chr11 82384047 82384413 -66399059 - MLT1B LTR MaLR -16 374 14 4499 218 52 43 chr11 82384419 82384743 -66398729 - L1M4 LINE L1 -1363 4783 4463 2358 84 3 13 chr11 82384743 82385052 -66398420 - AluY SINE Alu -5 306 1 4499 218 52 43 chr11 82385052 82385133 -66398339 - L1M4 LINE L1 -1683 4463 4384 2116 131 3 6 chr11 82385133 82385446 -66398026 - AluSx SINE Alu 0 312 1 4499 218 52 43 chr11 82385446 82386320 -66397152 - L1M4 LINE L1 -1762 4384 3488 2198 108 3 0 chr11 82386320 82386615 -66396857 - AluSx SINE Alu -16 296 1 4499 218 52 43 chr11 82386615 82386747 -66396725 - L1M4 LINE L1 -2658 3488 3359 26 0 0 0 chr11 82386985 82387011 -66396461 + AT_rich Low_complexity Low_complexity 1 26 0 1882 128 66 0 chr11 82387065 82387338 -66396134 - AluSg SINE Alu -19 291 1 2276 96 7 0 chr11 82387454 82387747 -66395725 + AluSx SINE Alu 10 304 -8 2301 103 0 6 chr11 82388155 82388466 -66395006 + AluY SINE Alu 1 309 -2 1279 187 189 28 chr11 82388580 82388971 -66394501 - L1ME2 LINE L1 -2 6162 5709 853 101 10 159 chr11 82389791 82389999 -66393473 - AluJo SINE Alu -7 305 129 5291 68 15 2 chr11 82390229 82390802 -66392670 - L1PA7 LINE L1 -276 5878 5314 216 0 0 0 chr11 82390802 82390826 -66392646 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5291 68 15 2 chr11 82390826 82391453 -66392019 - L1PA7 LINE L1 -840 5314 4667 737 133 17 0 chr11 82391453 82391573 -66391899 - L1MA1 LINE L1 -7 6295 6174 25 0 0 0 chr11 82392220 82392245 -66391227 + AT_rich Low_complexity Low_complexity 1 25 0 889 116 41 0 chr11 82392246 82392367 -66391105 - AluJo SINE Alu -176 126 1 218 330 21 32 chr11 82392952 82393046 -66390426 + L2 LINE L2 3179 3271 -1 590 275 35 7 chr11 82393164 82393341 -66390131 - MIR SINE MIR -11 251 71 201 346 103 0 chr11 82393422 82393500 -66389972 + MIR SINE MIR 38 123 -85 602 243 9 0 chr11 82393892 82394003 -66389469 - FLAM_A SINE Alu -30 112 1 1171 123 6 22 chr11 82394019 82394198 -66389274 - AluJo/FRAM SINE Alu -3 309 134 1600 181 55 7 chr11 82394198 82394490 -66388982 - AluJb SINE Alu -6 306 1 212 325 55 100 chr11 82394774 82395045 -66388427 - L2 LINE L2 -31 3241 2983 371 155 0 0 chr11 82395045 82395103 -66388369 - Alu SINE Alu 0 302 245 202 337 68 34 chr11 82395140 82395345 -66388127 - L2 LINE L2 -343 2971 2760 194 321 12 12 chr11 82395343 82395424 -66388048 - MIR3 SINE MIR -8 200 120 * 317 289 47 115 chr11 82396047 82396216 -66387256 + L2 LINE L2 3035 3183 -89 1964 127 19 29 chr11 82396216 82396530 -66386942 - AluSx SINE Alu -1 311 1 317 289 47 115 chr11 82396530 82396613 -66386859 + L2 LINE L2 3183 3270 -2 1068 298 89 20 chr11 82396920 82397454 -66386018 - L2 LINE L2 -43 3270 2700 2002 142 37 23 chr11 82397538 82397891 -66385581 + Tigger1 DNA MER2_type 24 381 -2037 2160 118 0 22 chr11 82398632 82398946 -66384526 - AluSx SINE Alu -5 307 1 2202 118 0 0 chr11 82398994 82399291 -66384181 + AluSx SINE Alu 1 297 -15 21 0 0 0 chr11 82399299 82399320 -66384152 + AT_rich Low_complexity Low_complexity 1 21 0 440 234 94 0 chr11 82399368 82399496 -66383976 - MIR SINE MIR -1 261 122 322 288 96 16 chr11 82399555 82399680 -66383792 - MLT1L LTR MaLR -2 613 479 2246 103 3 3 chr11 82399721 82400023 -66383449 - AluY SINE Alu -9 302 1 286 234 153 51 chr11 82400033 82400170 -66383302 - HAL1b LINE L1 0 1348 1198 495 169 0 0 chr11 82400419 82400490 -66382982 - AluJ/FLAM SINE Alu -240 72 2 23 0 0 0 chr11 82400491 82400514 -66382958 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr11 82400637 82400665 -66382807 + AT_rich Low_complexity Low_complexity 1 28 0 435 253 339 14 chr11 82400732 82400953 -66382519 - L2 LINE L2 -4 3309 3017 532 317 18 6 chr11 82400958 82401125 -66382347 - MIR SINE MIR -58 204 36 454 288 147 6 chr11 82401160 82401330 -66382142 - MIR SINE MIR -49 213 20 392 267 52 9 chr11 82401780 82401896 -66381576 - L2 LINE L2 -15 3257 3137 391 276 83 57 chr11 82401933 82402050 -66381422 + MIR3 SINE MIR 7 132 -76 2147 117 0 10 chr11 82402050 82402348 -66381124 + AluSx SINE Alu 1 295 -17 391 276 83 57 chr11 82402348 82402422 -66381050 + MIR3 SINE MIR 132 203 -5 550 292 83 19 chr11 82402516 82402732 -66380740 + MIR SINE MIR 20 249 -13 323 324 70 94 chr11 82402915 82403171 -66380301 - L2 LINE L2 -21 3251 3002 196 221 59 88 chr11 82403439 82403507 -66379965 - MIR SINE MIR -94 114 49 2338 76 0 17 chr11 82404138 82404440 -66379032 + AluSx SINE Alu 1 297 -15 666 293 73 35 chr11 82404721 82405035 -66378437 + MER102a DNA MER1_type 2 327 -3 253 234 271 9 chr11 82405659 82405766 -66377706 + MIR3 SINE MIR 44 178 -30 333 363 80 13 chr11 82405865 82406091 -66377381 - L3 LINE CR1 -11 1566 1326 194 304 36 0 chr11 82406164 82406220 -66377252 + MIR3 SINE MIR 111 168 -40 599 247 143 11 chr11 82406499 82406681 -66376791 + MIR SINE MIR 25 230 -32 321 151 81 47 chr11 82406832 82406918 -66376554 - MIR SINE MIR -71 191 103 212 197 213 0 chr11 82407018 82407079 -66376393 + MIR SINE MIR 146 219 -43 887 89 15 59 chr11 82407133 82407268 -66376204 - FLAM_C SINE Alu -4 129 1 2332 89 0 0 chr11 82407469 82407761 -66375711 + AluY SINE Alu 6 297 -14 1308 140 153 8 chr11 82410073 82410352 -66373120 + AluJb SINE Alu 14 326 0 233 228 206 0 chr11 82410582 82410662 -66372810 - MIR SINE MIR -85 123 60 244 284 25 25 chr11 82410921 82411002 -66372470 + MIR SINE MIR 114 194 -68 394 232 36 101 chr11 82411039 82411177 -66372295 - L2 LINE L2 -18 3295 3167 1801 159 22 29 chr11 82411279 82411593 -66371879 - AluJb SINE Alu 0 312 1 315 324 9 9 chr11 82411691 82411802 -66371670 + MIR3 SINE MIR 11 121 -87 2043 108 7 17 chr11 82412174 82412489 -66370983 + AluSx SINE Alu 1 312 0 364 274 66 11 chr11 82412801 82412977 -66370495 - MIR3 SINE MIR -64 144 2 1894 158 3 19 chr11 82414137 82414448 -66369024 - AluJo SINE Alu -6 306 1 2257 113 10 0 chr11 82414456 82414765 -66368707 - AluSx SINE Alu 0 312 1 2225 106 0 3 chr11 82414925 82415232 -66368240 + AluSx SINE Alu 1 306 0 1643 186 7 17 chr11 82415310 82415611 -66367861 + AluJo SINE Alu 4 301 -11 3171 8 0 0 chr11 82416174 82416545 -66366927 + L1PA4 LINE L1 2826 3196 -2950 14352 29 11 0 chr11 82416549 82418956 -66364516 + L1PA4 LINE L1 3728 6163 0 216 235 0 78 chr11 82419047 82419098 -66364374 + L2 LINE L2 3232 3278 -35 455 322 11 28 chr11 82419347 82419527 -66363945 - MER5B DNA MER1_type 0 178 2 248 323 65 24 chr11 82419976 82420100 -66363372 + L2 LINE L2 3098 3226 -46 204 182 0 0 chr11 82420123 82420167 -66363305 + (TGGA)n Simple_repeat Simple_repeat 3 46 0 266 299 122 9 chr11 82420475 82420582 -66362890 - MIR SINE MIR -56 152 34 260 273 73 0 chr11 82421419 82421529 -66361943 - MIR SINE MIR -14 248 131 * 425 250 29 44 chr11 82421527 82421663 -66361809 - L2 LINE L2 0 3313 3180 2230 89 0 13 chr11 82421968 82422271 -66361201 - AluSg SINE Alu -11 299 1 1670 156 58 11 chr11 82422712 82422987 -66360485 + AluJo SINE Alu 1 288 -24 2165 99 0 0 chr11 82423007 82423323 -66360149 + AluSx SINE Alu 9 324 0 225 234 299 0 chr11 82424746 82424853 -66358619 + L2 LINE L2 3174 3312 -1 225 0 0 0 chr11 82424924 82424949 -66358523 + (A)n Simple_repeat Simple_repeat 1 25 0 1180 121 6 0 chr11 82425067 82425233 -66358239 - AluSc SINE Alu -142 167 1 875 248 121 37 chr11 82425233 82425588 -66357884 - MLT1L LTR MaLR -215 400 16 198 323 15 100 chr11 82425614 82425744 -66357728 - MIR SINE MIR -67 141 23 1818 107 0 4 chr11 82426015 82426257 -66357215 - AluSg/x SINE Alu -4 306 66 2010 109 0 0 chr11 82426257 82426521 -66356951 - AluSq SINE Alu -48 265 1 715 200 0 8 chr11 82426995 82427120 -66356352 - FLAM_A SINE Alu -9 124 1 22 43 0 21 chr11 82427361 82427389 -66356083 + AT_rich Low_complexity Low_complexity 1 29 -17 2552 71 0 0 chr11 82427389 82427699 -66355773 - AluY SINE Alu -1 310 1 22 43 0 21 chr11 82427699 82427717 -66355755 + AT_rich Low_complexity Low_complexity 29 46 0 224 282 56 0 chr11 82427828 82427899 -66355573 - MIR SINE MIR 0 262 188 1032 156 0 0 chr11 82427976 82428156 -66355316 + (TA)n Simple_repeat Simple_repeat 1 180 0 2270 112 0 0 chr11 82428201 82428496 -66354976 + AluSx SINE Alu 1 295 -17 1794 134 20 13 chr11 82428724 82429030 -66354442 + AluSx SINE Alu 1 308 -4 1665 111 42 85 chr11 82429829 82430136 -66353336 + MER7A DNA MER2_type 54 345 -1 224 128 0 43 chr11 82430312 82430359 -66353113 + (TTTCC)n Simple_repeat Simple_repeat 1 45 0 1984 107 24 34 chr11 82430359 82430657 -66352815 - AluSx SINE Alu -15 297 3 222 321 12 12 chr11 82430661 82430742 -66352730 + L2 LINE L2 3190 3270 -2 1079 296 89 20 chr11 82431047 82431581 -66351891 - L2 LINE L2 -43 3270 2700 2002 142 37 23 chr11 82431665 82432018 -66351454 + Tigger1 DNA MER2_type 24 381 -2037 2149 121 0 19 chr11 82432759 82433072 -66350400 - AluSx SINE Alu -5 307 1 2226 114 0 0 chr11 82433120 82433418 -66350054 + AluSx SINE Alu 1 298 -14 21 0 0 0 chr11 82433426 82433447 -66350025 + AT_rich Low_complexity Low_complexity 1 21 0 440 234 94 0 chr11 82433495 82433623 -66349849 - MIR SINE MIR -1 261 122 322 288 96 16 chr11 82433682 82433807 -66349665 - MLT1L LTR MaLR -2 613 479 2272 104 3 0 chr11 82433847 82434146 -66349326 - AluSc SINE Alu -9 300 1 901 245 121 37 chr11 82434146 82434501 -66348971 - MLT1L LTR MaLR -215 400 16 198 323 15 100 chr11 82434527 82434657 -66348815 - MIR SINE MIR -67 141 23 1826 107 0 4 chr11 82434928 82435171 -66348301 - AluSg/x SINE Alu -3 307 66 2010 109 0 0 chr11 82435171 82435435 -66348037 - AluSq SINE Alu -48 265 1 715 200 0 8 chr11 82435909 82436034 -66347438 - FLAM_A SINE Alu -9 124 1 22 43 0 21 chr11 82436275 82436303 -66347169 + AT_rich Low_complexity Low_complexity 1 29 -17 2552 71 0 0 chr11 82436303 82436613 -66346859 - AluY SINE Alu -1 310 1 22 43 0 21 chr11 82436613 82436631 -66346841 + AT_rich Low_complexity Low_complexity 29 46 0 240 282 56 0 chr11 82436742 82436813 -66346659 - MIR SINE MIR 0 262 188 321 238 25 25 chr11 82436847 82436927 -66346545 + L1MC4 LINE L1 1988 2067 -4359 * 419 244 8 0 chr11 82436895 82437013 -66346459 + L1MC4 LINE L1 1995 6983 -1339 2270 112 0 0 chr11 82437075 82437370 -66346102 + AluSx SINE Alu 1 295 -17 2068 91 21 0 chr11 82437598 82437885 -66345587 + AluSp SINE Alu 1 293 -20 338 190 300 0 chr11 82438638 82438738 -66344734 - MLT1J LTR MaLR -29 482 353 2390 79 0 0 chr11 82438743 82439048 -66344424 - AluY SINE Alu -6 305 1 232 290 72 0 chr11 82439363 82439432 -66344040 - L3 LINE CR1 -21 1556 1483 186 344 16 16 chr11 82439440 82439501 -66343971 + MIR SINE MIR 21 81 -181 181 348 229 0 chr11 82439575 82439693 -66343779 - L3 LINE CR1 -410 1167 1023 1268 209 0 0 chr11 82440014 82440234 -66343238 - MER58A DNA MER1_type -3 221 2 444 298 40 7 chr11 82441454 82441605 -66341867 + LTR67 LTR ERVL 394 549 -8 1637 111 42 85 chr11 82441637 82441944 -66341528 - MER7A DNA MER2_type -1 345 54 2059 132 13 0 chr11 82442743 82443047 -66340425 - AluSx SINE Alu -4 308 1 1056 258 60 43 chr11 82443237 82443586 -66339886 + MLT1J LTR MaLR 3 357 -154 1311 121 0 24 chr11 82443587 82443794 -66339678 + AluJb SINE Alu 1 202 -110 252 0 0 0 chr11 82443930 82443958 -66339514 + (A)n Simple_repeat Simple_repeat 1 28 0 734 253 124 114 chr11 82444548 82444770 -66338702 + HAL1 LINE L1 958 1176 -1331 2160 106 3 3 chr11 82444770 82445072 -66338400 + AluSp SINE Alu 1 302 -11 734 253 124 114 chr11 82445072 82445430 -66338042 + HAL1 LINE L1 1176 1544 -963 240 139 0 47 chr11 82445438 82445481 -66337991 + MER57A LTR ERV1 296 336 -67 711 137 15 53 chr11 82445619 82445750 -66337722 + AluJb SINE Alu 9 134 -178 31 0 0 0 chr11 82445750 82445781 -66337691 + AT_rich Low_complexity Low_complexity 1 31 0 22 56 0 0 chr11 82445812 82445848 -66337624 + AT_rich Low_complexity Low_complexity 1 36 0 2247 74 0 17 chr11 82445908 82446204 -66337268 - AluY SINE Alu -20 291 1 1673 135 10 42 chr11 82446219 82446507 -66336965 - AluJo SINE Alu -25 287 9 2130 92 0 3 chr11 82446578 82446861 -66336611 - AluSg1 SINE Alu -27 282 1 887 220 14 117 chr11 82447060 82447137 -66336335 - MIR SINE MIR 0 262 179 1948 135 0 0 chr11 82447137 82447446 -66336026 + AluSx SINE Alu 1 309 0 887 220 14 117 chr11 82447446 82447658 -66335814 - MIR SINE MIR -83 179 2 2218 94 7 0 chr11 82447789 82448097 -66335375 + AluSq SINE Alu 1 310 -3 361 344 32 11 chr11 82448137 82448326 -66335146 + L1ME4a LINE L1 5836 6028 -93 205 167 95 0 chr11 82448451 82448493 -66334979 + L2 LINE L2 3268 3313 0 2086 107 0 7 chr11 82448500 82448798 -66334674 - AluSc SINE Alu -13 296 1 542 200 140 0 chr11 82449033 82449183 -66334289 - MER104 DNA Tc2 -9 171 1 773 252 93 13 chr11 82449221 82449447 -66334025 - MIR SINE MIR -17 245 2 223 296 0 0 chr11 82449578 82449632 -66333840 - L2 LINE L2 -552 2762 2709 274 291 118 9 chr11 82450608 82450718 -66332754 + MIR SINE MIR 115 236 -26 542 318 81 10 chr11 82450867 82451065 -66332407 + MIR SINE MIR 3 214 -48 893 107 0 0 chr11 82451348 82451469 -66332003 - AluSq/x SINE Alu -191 121 1 538 246 30 8 chr11 82451469 82451603 -66331869 - MIR SINE MIR -56 152 16 1154 175 27 63 chr11 82452683 82453015 -66330457 - MER33 DNA MER1_type -1 323 4 6551 139 24 22 chr11 82453127 82453574 -66329898 + Ricksha_b DNA DNA 1 446 -2813 2004 111 7 14 chr11 82453574 82453871 -66329601 + AluSx SINE Alu 1 295 -17 6551 139 24 22 chr11 82453871 82454587 -66328885 + Ricksha_b DNA DNA 446 1646 -13 292 305 39 8 chr11 82454607 82454735 -66328737 - L1ME4a LINE L1 -244 5877 5746 501 207 2 2 chr11 82454938 82455041 -66328431 + L1ME1 LINE L1 6007 6106 -56 219 36 0 0 chr11 82455474 82455502 -66327970 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1424 155 72 8 chr11 82455509 82455773 -66327699 - AluJo SINE Alu -31 281 1 260 304 43 0 chr11 82456325 82456417 -66327055 + L1MC/D LINE L1 5482 5577 -665 1163 252 14 4 chr11 82456537 82456815 -66326657 - L1MEc LINE L1 -6081 315 35 941 175 0 16 chr11 82456888 82457116 -66326356 - AluJb SINE Alu 0 312 127 1913 149 3 0 chr11 82457160 82457456 -66326016 + AluJb SINE Alu 1 297 -15 410 217 8 85 chr11 82457618 82457747 -66325725 + MLT1J LTR MaLR 100 218 -293 239 132 170 0 chr11 82457854 82457907 -66325565 - MLT1H LTR MaLR -44 551 490 307 274 172 26 chr11 82457936 82458151 -66325321 - MLT1H LTR MaLR -231 364 116 550 259 72 36 chr11 82458827 82458993 -66324479 + MER5B DNA MER1_type 7 178 0 327 262 134 47 chr11 82458994 82459126 -66324346 + L1MC4 LINE L1 7620 7768 -274 2121 114 3 0 chr11 82459126 82459423 -66324049 - AluSx SINE Alu -14 298 1 327 262 134 47 chr11 82459423 82459439 -66324033 + L1MC4 LINE L1 7768 7781 -261 1950 145 6 3 chr11 82459457 82459768 -66323704 + AluJo SINE Alu 1 312 0 219 69 0 0 chr11 82459768 82459797 -66323675 + (GGAA)n Simple_repeat Simple_repeat 3 31 0 479 254 12 59 chr11 82459826 82459995 -66323477 + L1MC4 LINE L1 7816 7976 -66 200 184 41 0 chr11 82460232 82460281 -66323191 + CT-rich Low_complexity Low_complexity 2 52 0 255 242 26 15 chr11 82460636 82460840 -66322632 + CT-rich Low_complexity Low_complexity 1 206 0 2147 115 3 0 chr11 82461001 82461313 -66322159 - AluSq SINE Alu 0 313 1 5874 56 49 13 chr11 82461663 82462414 -66321058 + LTR17 LTR ERV1 1 778 -2 700 182 42 35 chr11 82462417 82462560 -66320912 + LTR8 LTR ERV1 3 146 -545 1946 147 7 0 chr11 82462569 82462875 -66320597 + AluSx SINE Alu 1 308 -4 392 192 13 13 chr11 82462882 82462960 -66320512 + LTR8A LTR ERV1 568 645 -82 1613 208 45 47 chr11 82462965 82463369 -66320103 - LTR9 LTR ERV1 0 612 210 501 158 21 21 chr11 82463396 82463491 -66319981 - AluJ/FLAM SINE Alu -216 96 2 407 320 66 13 chr11 82463492 82463720 -66319752 + L1MC4a LINE L1 5586 5825 -1983 259 158 0 0 chr11 82463748 82463786 -66319686 - Alu SINE Alu -262 38 1 510 300 36 56 chr11 82463823 82464073 -66319399 - L2 LINE L2 -78 3194 2950 559 167 14 109 chr11 82464816 82464954 -66318518 - LTR8A LTR ERV1 0 727 603 3300 141 2 6 chr11 82464955 82465458 -66318014 - MER50 LTR ERV1 -23 711 211 1522 153 12 8 chr11 82465458 82465713 -66317759 - AluJb SINE Alu -23 289 34 2589 89 8 14 chr11 82465713 82466074 -66317398 - LTR8A LTR ERV1 -368 359 1 1208 153 10 5 chr11 82467376 82467579 -66315893 - AluJb SINE Alu -23 289 86 584 179 49 24 chr11 82467585 82467708 -66315764 - FLAM_C SINE Alu -16 127 2 21 57 0 0 chr11 82467711 82467746 -66315726 + AT_rich Low_complexity Low_complexity 1 35 0 682 168 0 0 chr11 82467756 82467863 -66315609 + AluSq/x SINE Alu 2 108 -205 1347 77 0 0 chr11 82467868 82468038 -66315434 - AluY SINE Alu -7 304 135 771 155 43 91 chr11 82468329 82468516 -66314956 - MER5B DNA MER1_type 0 178 1 30 0 0 0 chr11 82468672 82468702 -66314770 + AT_rich Low_complexity Low_complexity 1 30 0 868 119 0 0 chr11 82468702 82468820 -66314652 - FLAM_C SINE Alu -25 118 1 1852 114 3 31 chr11 82469339 82469540 -66313932 - AluSx SINE Alu 0 308 117 2391 103 73 6 chr11 82469540 82469881 -66313591 + THE1B LTR MaLR 1 364 0 1852 114 3 31 chr11 82469881 82469992 -66313480 - AluSx SINE Alu -191 117 4 887 199 147 5 chr11 82470208 82470419 -66313053 - LTR16A1 LTR ERVL -20 437 197 865 185 29 12 chr11 82470449 82470622 -66312850 - MER5A DNA MER1_type -7 182 7 372 304 43 31 chr11 82471863 82471968 -66311504 + L3 LINE CR1 1212 1321 -256 1667 135 11 0 chr11 82471968 82472228 -66311244 - AluSx SINE Alu -16 296 34 372 304 43 31 chr11 82472228 82472283 -66311189 + L3 LINE CR1 1321 1374 -203 2088 115 0 0 chr11 82472331 82472646 -66310826 + AluSx SINE Alu 1 315 0 372 294 0 9 chr11 82472664 82472773 -66310699 + MIR SINE MIR 41 148 -114 854 120 0 0 chr11 82472775 82472892 -66310580 + FLAM_C SINE Alu 1 117 -16 2095 135 0 0 chr11 82472941 82473253 -66310219 + AluSx SINE Alu 1 312 0 242 303 0 15 chr11 82473392 82473458 -66310014 - L2 LINE L2 -5 3308 3244 2032 111 37 0 chr11 82473531 82473829 -66309643 - AluSx SINE Alu -3 309 1 1325 167 31 37 chr11 82473838 82474132 -66309340 - AluJo SINE Alu -19 293 2 195 283 17 17 chr11 82474297 82474357 -66309115 - L2 LINE L2 -6 3266 3207 222 343 14 14 chr11 82474361 82474431 -66309041 - MIR SINE MIR -181 81 12 320 319 137 49 chr11 82474481 82474707 -66308765 - L2 LINE L2 0 3272 3027 218 252 252 26 chr11 82475150 82475265 -66308207 - MIR SINE MIR -61 201 61 360 289 23 31 chr11 82475348 82475476 -66307996 + MIR3 SINE MIR 68 194 -14 1527 153 28 8 chr11 82475537 82475792 -66307680 + AluSx SINE Alu 1 260 -52 754 146 16 0 chr11 82475893 82476016 -66307456 - AluSq/x SINE Alu -188 125 1 248 321 52 62 chr11 82476017 82476210 -66307262 + L2 LINE L2 2688 2878 -436 770 138 0 49 chr11 82476426 82476549 -66306923 + FLAM_C SINE Alu 2 118 -25 198 0 0 0 chr11 82476553 82476575 -66306897 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 203 258 0 45 chr11 82477364 82477430 -66306042 + G-rich Low_complexity Low_complexity 2 64 0 955 134 18 6 chr11 82477802 82477966 -66305506 - AluJb SINE Alu 0 312 147 241 190 86 0 chr11 82477993 82478051 -66305421 + LTR24 LTR ERV1 405 467 0 185 294 0 0 chr11 82478053 82478104 -66305368 + MIR SINE MIR 99 149 -59 209 245 41 0 chr11 82478182 82478231 -66305241 - MIR SINE MIR -56 152 102 414 273 6 31 chr11 82478232 82478393 -66305079 - MER93b LTR ERV1 0 373 217 1994 128 14 0 chr11 82478402 82478698 -66304774 + AluSx SINE Alu 1 300 -12 311 265 0 0 chr11 82478705 82478773 -66304699 - L1MC4 LINE L1 -1339 6703 6636 325 313 19 25 chr11 82478776 82478921 -66304551 - MER93a LTR ERV1 -170 232 89 320 81 2 133 chr11 82478921 82478963 -66304509 - MLT2A1 LTR ERVL -2 442 421 2083 121 7 3 chr11 82478963 82479270 -66304202 + AluSq SINE Alu 1 308 -5 320 81 2 133 chr11 82479270 82479299 -66304173 - MLT2A1 LTR ERVL -23 421 390 265 284 23 0 chr11 82479347 82479435 -66304037 + L1MC4 LINE L1 6614 6703 -1339 3285 67 0 2 chr11 82479441 82479846 -66303626 - MLT2A1 LTR ERVL -40 404 1 915 224 10 10 chr11 82480092 82480284 -66303188 + L1MC3 LINE L1 7107 7298 -487 1060 143 11 23 chr11 82480288 82480454 -66303018 - MER4B LTR ERV1 0 610 444 1868 139 0 21 chr11 82480454 82480772 -66302700 + AluSx SINE Alu 1 312 0 1561 174 7 27 chr11 82480780 82481074 -66302398 + AluJb SINE Alu 1 288 -24 1134 293 80 0 chr11 82481647 82481971 -66301501 - ERVL LTR ERVL -1066 4698 4349 1573 251 116 33 chr11 82481971 82482461 -66301011 + MLT1H LTR MaLR 1 531 -18 603 300 132 16 chr11 82482481 82482791 -66300681 - LTR40a LTR ERVL -49 470 125 1246 265 32 29 chr11 82482965 82483312 -66300160 - ERVL LTR ERVL -1411 4353 4006 2009 113 3 3 chr11 82483826 82484139 -66299333 - AluSq SINE Alu 0 313 1 236 172 0 69 chr11 82484153 82484211 -66299261 - MLT1L LTR MaLR -553 62 9 1632 150 45 4 chr11 82484246 82484400 -66299072 - AluJb SINE Alu -29 283 112 227 31 31 0 chr11 82484400 82484432 -66299040 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 1632 150 45 4 chr11 82484432 82484544 -66298928 - AluJb SINE Alu -200 112 6 2035 112 14 0 chr11 82484555 82484851 -66298621 - AluSq SINE Alu -13 300 1 1593 141 3 69 chr11 82485135 82485472 -66298000 - AluSx SINE Alu 0 317 1 281 257 23 19 chr11 82485651 82485752 -66297720 - MLT1H LTR MaLR -227 223 120 21 0 0 0 chr11 82486009 82486030 -66297442 + AT_rich Low_complexity Low_complexity 1 21 0 1788 162 0 16 chr11 82486757 82487071 -66296401 + AluJb SINE Alu 1 309 -3 2229 96 0 0 chr11 82487146 82487438 -66296034 - AluSg SINE Alu -17 293 2 918 199 107 87 chr11 82487710 82487912 -66295560 - MLT1D LTR MaLR 0 505 308 1714 166 33 0 chr11 82487912 82488213 -66295259 - AluJo SINE Alu -1 311 1 918 199 107 87 chr11 82488213 82488410 -66295062 - MLT1D LTR MaLR -197 308 1 2192 83 3 47 chr11 82488518 82488819 -66294653 + AluSx SINE Alu 8 295 -17 2597 149 11 65 chr11 82488897 82489373 -66294099 + Tigger1 DNA MER2_type 1 448 -1970 1622 173 55 3 chr11 82489373 82489662 -66293810 + AluJo SINE Alu 1 304 -8 2597 149 11 65 chr11 82489662 82489709 -66293763 + Tigger1 DNA MER2_type 448 496 -1922 2029 152 3 10 chr11 82489709 82490019 -66293453 + AluJo SINE Alu 1 308 -4 1729 123 8 0 chr11 82490019 82490280 -66293192 + Tigger1 DNA MER2_type 2034 2296 -122 1342 194 28 12 chr11 82490280 82490533 -66292939 + AluJo SINE Alu 1 257 -55 793 187 0 0 chr11 82490537 82490671 -66292801 + Tigger1 DNA MER2_type 2285 2418 0 207 311 0 0 chr11 82490674 82490735 -66292737 - MIR SINE MIR -2 260 200 1821 131 25 18 chr11 82490740 82491058 -66292414 - AluSq SINE Alu 0 320 1 1646 172 13 48 chr11 82491058 82491372 -66292100 - AluJb SINE Alu -9 303 1 1294 241 141 78 chr11 82491373 82491686 -66291786 - L1MEc LINE L1 -5377 1019 727 2305 121 0 3 chr11 82491686 82491999 -66291473 - AluSx SINE Alu 0 312 1 1294 241 141 78 chr11 82491999 82492402 -66291070 - L1MEc LINE L1 -5669 727 258 2262 120 0 0 chr11 82492533 82492825 -66290647 - AluSc SINE Alu -17 292 1 21 0 0 0 chr11 82492842 82492863 -66290609 + AT_rich Low_complexity Low_complexity 1 21 0 1054 119 0 34 chr11 82492865 82493042 -66290430 - MER4B LTR ERV1 -251 359 189 1341 102 10 10 chr11 82493073 82493279 -66290193 - MER4B LTR ERV1 -404 206 1 780 144 70 8 chr11 82493285 82493487 -66289985 + L1MD3 LINE L1 7290 7478 -517 2291 114 0 0 chr11 82493487 82493785 -66289687 + AluSg SINE Alu 1 298 -12 780 144 70 8 chr11 82493785 82493813 -66289659 + L1MD3 LINE L1 7478 7735 -260 1227 216 0 0 chr11 82493823 82494036 -66289436 + AluJb SINE Alu 1 213 -99 3078 179 50 30 chr11 82494036 82494081 -66289391 - MER61-int LTR ERV1 -215 6765 6722 2132 108 49 0 chr11 82494081 82494367 -66289105 + AluSx SINE Alu 1 300 -12 3078 179 50 30 chr11 82494367 82494940 -66288532 - MER61-int LTR ERV1 -253 6727 3457 2579 62 0 10 chr11 82494940 82495248 -66288224 - AluY SINE Alu -6 305 1 223 362 92 7 chr11 82495405 82495557 -66287915 - MIR SINE MIR -65 197 33 * 546 249 23 52 chr11 82495508 82495681 -66287791 + MIR3 SINE MIR 29 196 -12 1769 151 30 30 chr11 82496211 82496509 -66286963 - AluJo SINE Alu -11 301 4 2199 114 0 40 chr11 82496527 82496852 -66286620 - AluSx SINE Alu 0 312 1 340 251 155 21 chr11 82496876 82497063 -66286409 - L2 LINE L2 -12 3301 3090 458 218 184 63 chr11 82497598 82497772 -66285700 - MIR SINE MIR -54 208 14 1282 194 93 11 chr11 82497868 82498146 -66285326 - AluJb SINE Alu -1 301 1 388 176 11 66 chr11 82498188 82498279 -66285193 + MIR3 SINE MIR 116 201 -7 680 243 88 22 chr11 82498327 82498553 -66284919 + L1MC4a LINE L1 5624 5864 -1944 2463 84 0 0 chr11 82498564 82498863 -66284609 + AluSx SINE Alu 1 299 -13 1072 171 11 0 chr11 82498863 82499038 -66284434 + AluSg/x SINE Alu 134 310 -2 233 274 16 0 chr11 82499045 82499107 -66284365 + (TA)n Simple_repeat Simple_repeat 2 64 0 408 93 0 0 chr11 82499214 82499268 -66284204 - Alu SINE Alu -18 294 241 1746 171 34 10 chr11 82499284 82499577 -66283895 - AluJo SINE Alu -10 302 3 263 71 24 0 chr11 82499620 82499662 -66283810 + (TC)n Simple_repeat Simple_repeat 2 44 0 198 0 0 0 chr11 82499693 82499715 -66283757 + (TTTC)n Simple_repeat Simple_repeat 1 22 0 239 272 58 69 chr11 82499725 82499812 -66283660 + MIR SINE MIR 34 119 -89 630 241 67 31 chr11 82500098 82500322 -66283150 + MLT1K LTR MaLR 346 577 -11 857 258 183 16 chr11 82500339 82500727 -66282745 + LTR33 LTR ERVL 3 455 -66 2286 118 0 3 chr11 82500728 82501032 -66282440 + AluSx SINE Alu 1 303 -9 2274 99 10 0 chr11 82501044 82501338 -66282134 + AluSx SINE Alu 1 297 -15 234 254 0 0 chr11 82501339 82501398 -66282074 + LTR33 LTR ERVL 445 503 -18 725 294 32 18 chr11 82501520 82501738 -66281734 - MIR SINE MIR -22 240 20 573 288 189 29 chr11 82501762 82502043 -66281429 + L2 LINE L2 2983 3308 -5 374 273 116 8 chr11 82502113 82502267 -66281205 - MIR SINE MIR -63 145 3 1769 86 0 0 chr11 82502787 82503008 -66280464 + AluSq SINE Alu 85 305 -8 546 179 134 8 chr11 82503022 82503156 -66280316 + L1ME3A LINE L1 6017 6167 -3 2073 127 3 41 chr11 82504401 82504717 -66278755 + AluJo SINE Alu 1 304 -8 893 169 142 6 chr11 82504737 82504920 -66278552 + AluJb SINE Alu 87 294 -18 1235 160 0 24 chr11 82505073 82505260 -66278212 + AluJb SINE Alu 112 295 -17 2458 100 0 0 chr11 82505260 82505570 -66277902 + AluSx SINE Alu 1 310 -2 1235 160 0 24 chr11 82505570 82505588 -66277884 + AluJb SINE Alu 295 312 0 658 218 0 0 chr11 82505614 82505738 -66277734 + FLAM_A SINE Alu 11 134 -8 1938 182 116 32 chr11 82505775 82506241 -66277231 + MLT1D LTR MaLR 1 505 0 3636 173 34 20 chr11 82506247 82506419 -66277053 - MER50 LTR ERV1 -23 711 543 2359 117 0 0 chr11 82506419 82506727 -66276745 + AluSx SINE Alu 1 308 -4 3636 173 34 20 chr11 82506727 82507255 -66276217 - MER50 LTR ERV1 -191 543 1 929 128 0 8 chr11 82507950 82508083 -66275389 + FLAM_C SINE Alu 1 132 -1 216 311 0 0 chr11 82508302 82508376 -66275096 + MIR3 SINE MIR 116 189 -19 305 274 27 0 chr11 82508831 82508904 -66274568 - MIR SINE MIR -61 147 73 2053 134 16 16 chr11 82508911 82509082 -66274390 - AluJo SINE Alu -7 305 135 188 35 35 0 chr11 82509082 82509111 -66274361 + (TTA)n Simple_repeat Simple_repeat 2 31 0 2092 124 3 0 chr11 82509111 82509393 -66274079 - AluJb SINE Alu -29 283 1 2053 134 16 16 chr11 82509393 82509525 -66273947 - AluJo SINE Alu -175 137 1 2244 101 0 0 chr11 82509526 82509834 -66273638 - AluSx SINE Alu 0 314 7 352 255 0 32 chr11 82510016 82510110 -66273362 - MER5A DNA MER1_type -83 106 16 1856 107 96 31 chr11 82510140 82510431 -66273041 - AluSx SINE Alu -2 310 1 542 222 44 44 chr11 82510437 82510617 -66272855 + L2 LINE L2 3112 3291 -22 2363 77 34 0 chr11 82510717 82511014 -66272458 - AluSp SINE Alu -6 307 1 1668 176 7 7 chr11 82511014 82511297 -66272175 - AluJo SINE Alu -11 301 18 318 88 55 33 chr11 82511333 82511424 -66272048 + (TA)n Simple_repeat Simple_repeat 1 93 0 920 132 8 0 chr11 82511427 82511556 -66271916 - FLAM_C SINE Alu -3 130 1 2262 108 7 0 chr11 82511668 82511963 -66271509 + AluSx SINE Alu 1 297 -15 1714 135 0 4 chr11 82511996 82512240 -66271232 + AluJb SINE Alu 47 289 -23 2191 136 3 10 chr11 82512668 82512846 -66270626 - AluSx SINE Alu 0 312 135 1989 93 0 12 chr11 82512846 82513104 -66270368 - AluSx SINE Alu -14 298 44 2191 136 3 10 chr11 82513104 82513235 -66270237 - AluSx SINE Alu -177 135 5 1819 146 27 27 chr11 82513737 82513874 -66269598 + AluSx SINE Alu 1 137 -175 2232 121 3 0 chr11 82513874 82514172 -66269300 + AluSx SINE Alu 1 299 -13 2470 67 0 10 chr11 82514175 82514473 -66268999 + AluY SINE Alu 3 297 -14 1819 146 27 27 chr11 82514473 82514632 -66268840 + AluSx SINE Alu 138 301 -11 219 240 179 78 chr11 82514981 82515160 -66268312 - MIR3 SINE MIR -7 201 5 532 134 24 0 chr11 82515200 82515282 -66268190 - FLAM_C SINE Alu -25 118 35 1926 73 9 0 chr11 82515387 82515620 -66267852 + AluSx SINE Alu 1 235 -77 1940 161 0 7 chr11 82515645 82515943 -66267529 - AluJb SINE Alu -16 296 1 2330 104 0 10 chr11 82516304 82516612 -66266860 - AluSg SINE Alu -5 305 1 1577 167 10 61 chr11 82516683 82516833 -66266639 + AluJo SINE Alu 1 128 -184 2386 95 3 0 chr11 82516833 82517129 -66266343 + AluSg SINE Alu 1 297 -13 1577 167 10 61 chr11 82517129 82517290 -66266182 + AluJo SINE Alu 128 296 -16 2230 98 7 7 chr11 82517443 82517770 -66265702 - AluSx SINE Alu 0 312 1 295 210 98 20 chr11 82517850 82517982 -66265490 + MIR SINE MIR 37 178 -62 226 35 0 0 chr11 82518006 82518035 -66265437 + AluY SINE Alu 2 30 -270 1554 122 0 5 chr11 82518035 82518257 -66265215 + AluSg/x SINE Alu 85 305 -7 1001 126 17 57 chr11 82518413 82518588 -66264884 - AluSx SINE Alu -144 168 1 241 267 53 0 chr11 82518605 82518680 -66264792 + L1MC/D LINE L1 5814 5892 -1916 1725 161 59 3 chr11 82519114 82519400 -66264072 - AluJb SINE Alu -10 302 1 1610 167 24 29 chr11 82519401 82519742 -66263730 + MLT2C1 LTR ERVL 3 341 -56 183 397 0 0 chr11 82519801 82519869 -66263603 - L2 LINE L2 0 3272 3205 768 249 48 14 chr11 82520079 82520288 -66263184 + MIR SINE MIR 47 262 0 497 138 12 0 chr11 82520336 82520416 -66263056 + MER72 LTR ERV1 585 665 -57 1814 152 78 0 chr11 82520540 82520823 -66262649 + AluJb SINE Alu 1 305 -7 914 253 51 16 chr11 82520823 82521071 -66262401 - MIR SINE MIR -5 257 1 315 237 69 76 chr11 82521169 82521268 -66262204 - MIR SINE MIR -13 249 151 225 0 0 0 chr11 82521268 82521293 -66262179 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 1865 137 4 4 chr11 82521298 82521575 -66261897 - AluSx SINE Alu -35 277 1 315 237 69 76 chr11 82521575 82521600 -66261872 - MIR SINE MIR -115 147 120 830 308 26 56 chr11 82521603 82521779 -66261693 + HERVL LTR ERVL 2065 2245 -3519 2244 103 0 26 chr11 82521779 82522081 -66261391 - AluSx SINE Alu -18 294 1 830 308 26 56 chr11 82522081 82522333 -66261139 + HERVL LTR ERVL 2245 2480 -3284 304 364 0 7 chr11 82522436 82522579 -66260893 + HERVL LTR ERVL 5205 5346 -308 459 299 102 49 chr11 82522923 82523227 -66260245 + LTR16C LTR ERVL 172 491 0 1853 150 25 0 chr11 82523516 82523790 -66259682 + AluJb SINE Alu 1 281 -31 2081 133 7 0 chr11 82523939 82524241 -66259231 + AluSx SINE Alu 1 304 -8 374 331 14 33 chr11 82524371 82524561 -66258911 + MIR SINE MIR 6 239 -23 1515 97 15 0 chr11 82524805 82525000 -66258472 + AluSg/x SINE Alu 83 280 -30 2199 105 3 3 chr11 82525041 82525335 -66258137 + AluSx SINE Alu 2 295 -17 1546 155 20 28 chr11 82525348 82525600 -66257872 + AluJo SINE Alu 1 250 -62 192 40 0 0 chr11 82525600 82525625 -66257847 + (CATA)n Simple_repeat Simple_repeat 3 27 0 483 114 0 0 chr11 82525798 82525868 -66257604 + AluJo SINE Alu 227 296 -16 205 167 0 0 chr11 82525986 82526022 -66257450 + (CA)n Simple_repeat Simple_repeat 2 37 0 373 209 116 0 chr11 82526349 82526435 -66257037 - MIR SINE MIR -59 149 54 1832 149 0 23 chr11 82526520 82526829 -66256643 - AluSq SINE Alu -11 302 1 462 307 42 12 chr11 82527297 82527463 -66256009 - MIR3 SINE MIR 0 208 38 443 325 75 0 chr11 82527635 82527795 -66255677 + MIR SINE MIR 85 256 -6 2074 121 0 40 chr11 82528048 82528370 -66255102 + AluSq SINE Alu 1 309 -4 920 201 53 8 chr11 82528370 82528614 -66254858 + L1M4 LINE L1 4379 4633 -1513 271 396 0 0 chr11 82528912 82529013 -66254459 + MIR3 SINE MIR 98 198 -10 225 0 0 0 chr11 82529159 82529184 -66254288 + (A)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr11 82529505 82529526 -66253946 + AT_rich Low_complexity Low_complexity 1 21 0 2549 84 0 0 chr11 82530522 82530833 -66252639 + AluY SINE Alu 1 311 0 2211 114 17 0 chr11 82530944 82531241 -66252231 - AluSx SINE Alu -8 304 3 2101 118 3 38 chr11 82531244 82531558 -66251914 - AluSx SINE Alu -9 303 1 799 295 159 13 chr11 82531818 82532283 -66251189 + L2 LINE L2 2175 2707 -607 2228 95 0 0 chr11 82532290 82532603 -66250869 + AluSx SINE Alu 1 313 0 227 259 19 0 chr11 82532759 82532813 -66250659 + L2 LINE L2 3193 3247 -25 1470 147 5 0 chr11 82533295 82533513 -66249959 + AluJb SINE Alu 85 303 -9 1725 143 106 0 chr11 82533995 82534268 -66249204 - AluSx SINE Alu -10 302 1 2422 103 0 0 chr11 82534282 82534593 -66248879 - AluSx SINE Alu -1 311 1 2466 74 0 19 chr11 82534830 82535141 -66248331 - AluY SINE Alu -6 305 1 368 228 139 13 chr11 82535528 82535646 -66247826 + MIR SINE MIR 25 148 -67 841 139 16 0 chr11 82535648 82535770 -66247702 + AluJo SINE Alu 11 134 -178 341 250 36 0 chr11 82535782 82535866 -66247606 + MIR SINE MIR 168 254 -8 2312 76 24 0 chr11 82537236 82537524 -66245948 + AluY SINE Alu 1 295 -16 403 249 43 43 chr11 82538088 82538274 -66245198 - MIR3 SINE MIR -62 146 2 470 281 9 9 chr11 82538502 82538616 -66244856 + MIR SINE MIR 39 152 -56 2048 103 17 21 chr11 82538698 82538988 -66244484 - AluSg SINE Alu -21 289 1 338 219 115 10 chr11 82538988 82539084 -66244388 - MIR SINE MIR -111 151 46 318 301 80 74 chr11 82539299 82539360 -66244112 + MIR3 SINE MIR 38 97 -111 2095 101 3 3 chr11 82539360 82539648 -66243824 - AluSc SINE Alu -21 288 1 2274 84 0 3 chr11 82539649 82539945 -66243527 - AluSx SINE Alu -17 295 1 318 301 80 74 chr11 82539945 82540044 -66243428 + MIR3 SINE MIR 96 201 -7 526 323 65 5 chr11 82540453 82540654 -66242818 + MIR SINE MIR 2 214 -48 2228 88 7 3 chr11 82541028 82541322 -66242150 + AluSc SINE Alu 1 295 -14 1533 149 10 65 chr11 82541401 82541710 -66241762 - AluJb SINE Alu -20 292 1 998 175 139 0 chr11 82542074 82542268 -66241204 - MER58A DNA MER1_type 0 224 4 22 35 0 0 chr11 82542581 82542610 -66240862 + AT_rich Low_complexity Low_complexity 1 29 0 1636 203 61 0 chr11 82542659 82542969 -66240503 + MLT1A1 LTR MaLR 1 329 -36 317 154 92 0 chr11 82543004 82543069 -66240403 + MLT1A1 LTR MaLR 304 374 0 181 250 0 0 chr11 82543498 82543538 -66239934 + MIR3 SINE MIR 162 201 -7 215 281 0 0 chr11 82543673 82543730 -66239742 - MIR3 SINE MIR -2 206 150 1383 142 5 0 chr11 82543775 82543993 -66239479 - AluJb SINE Alu -9 303 85 223 259 19 0 chr11 82544475 82544529 -66238943 - L2 LINE L2 -25 3247 3193 2079 99 0 0 chr11 82544685 82544998 -66238474 - AluSx SINE Alu 0 313 1 745 285 169 17 chr11 82545005 82545468 -66238004 - L2 LINE L2 -607 2707 2175 1940 115 0 0 chr11 82545728 82545998 -66237474 + AluSx SINE Alu 1 270 -42 1221 95 0 26 chr11 82546028 82546045 -66237427 + AluSp SINE Alu 120 136 -177 2005 110 17 7 chr11 82546045 82546336 -66237136 + AluSx SINE Alu 3 296 -16 1221 95 0 26 chr11 82546336 82546507 -66236965 + AluSp SINE Alu 136 303 -10 2198 82 0 13 chr11 82547540 82547845 -66235627 + AluSx SINE Alu 1 301 -11 314 338 86 7 chr11 82548247 82548386 -66235086 + MIR SINE MIR 3 152 -110 779 150 0 0 chr11 82548397 82548510 -66234962 + FLAM_C SINE Alu 13 125 -18 294 360 52 20 chr11 82548695 82548848 -66234624 - MIR3 SINE MIR -10 198 41 980 196 52 8 chr11 82549093 82549343 -66234129 - L1M4 LINE L1 -1513 4633 4373 1983 119 0 26 chr11 82549348 82549658 -66233814 - AluSx SINE Alu -10 302 1 631 303 97 13 chr11 82549750 82549978 -66233494 - MIR SINE MIR -4 258 12 303 258 0 0 chr11 82550633 82550699 -66232773 + MIR3 SINE MIR 139 204 -4 354 111 0 0 chr11 82551390 82551444 -66232028 + Alu SINE Alu 239 292 -8 1134 108 70 5 chr11 82551444 82551630 -66231842 - L1MC1 LINE L1 -310 6023 5826 2295 62 14 0 chr11 82552763 82553051 -66230421 + AluSp SINE Alu 1 292 -21 1490 175 3 34 chr11 82553863 82554160 -66229312 - AluJo SINE Alu -24 288 1 2226 100 0 0 chr11 82554306 82554607 -66228865 + AluSx SINE Alu 1 301 -11 1263 165 0 5 chr11 82555243 82555461 -66228011 + L1MA4 LINE L1 6060 6276 -24 1444 208 7 11 chr11 82555581 82555865 -66227607 - AluJb SINE Alu -29 283 1 2209 103 0 0 chr11 82556120 82556410 -66227062 - AluSx SINE Alu -16 296 7 187 280 0 40 chr11 82556416 82556466 -66227006 - L2 LINE L2 -10 3262 3215 243 263 221 11 chr11 82556629 82556724 -66226748 - MIR SINE MIR -147 115 1 1736 169 0 3 chr11 82556984 82557279 -66226193 + AluJb SINE Alu 1 294 -18 476 252 48 34 chr11 82557373 82557520 -66225952 - MIR SINE MIR -50 212 64 1768 153 3 13 chr11 82557527 82557828 -66225644 - AluJo SINE Alu -11 301 4 469 247 146 6 chr11 82558610 82558703 -66224769 + MER5A DNA MER1_type 10 89 -100 1859 139 13 3 chr11 82558703 82559012 -66224460 - AluJb SINE Alu 0 312 1 469 247 146 6 chr11 82559012 82559076 -66224396 + MER5A DNA MER1_type 89 189 0 396 237 148 41 chr11 82559113 82559282 -66224190 + MIR SINE MIR 57 243 -19 1911 89 15 95 chr11 82560440 82560767 -66222705 + AluSq SINE Alu 1 301 -12 1617 179 45 75 chr11 82560825 82561289 -66222183 + LTR7 LTR ERV1 1 450 0 9528 205 21 41 chr11 82561289 82564509 -66218963 + HERVH LTR ERV1 1 3124 -3524 3789 120 0 5 chr11 82564504 82565055 -66218417 + HERVH LTR ERV1 3329 3876 -3837 * 2845 210 0 0 chr11 82565051 82565571 -66217901 + HERVH LTR ERV1 7038 7557 -156 * 253 302 99 59 chr11 82565801 82566023 -66217449 + HERVH LTR ERV1 485 715 -7542 289 336 9 9 chr11 82566165 82566278 -66217194 + HERVH LTR ERV1 874 986 -7271 328 230 92 17 chr11 82566397 82566552 -66216920 + HERVH LTR ERV1 6543 7713 0 1579 191 32 75 chr11 82566552 82567022 -66216450 + LTR7 LTR ERV1 1 450 0 278 274 68 0 chr11 82567050 82567123 -66216349 - L3 LINE CR1 -174 1403 1326 405 186 0 0 chr11 82567302 82567372 -66216100 - AluJo SINE Alu -11 301 232 914 109 22 0 chr11 82567373 82567511 -66215961 - AluJo SINE Alu -171 141 1 228 270 70 59 chr11 82567560 82567830 -66215642 + L1ME LINE L1 5591 5863 -258 2100 113 0 0 chr11 82567953 82568244 -66215228 - AluSx SINE Alu -21 291 1 2305 74 7 0 chr11 82568267 82568564 -66214908 - AluY SINE Alu -12 299 1 2185 94 7 0 chr11 82568565 82568862 -66214610 - AluSp SINE Alu -14 299 1 430 214 71 0 chr11 82568862 82568960 -66214512 - L1 LINE L1 -901 5245 5141 1979 99 24 7 chr11 82568960 82569253 -66214219 + AluSx SINE Alu 1 298 -14 2083 99 7 3 chr11 82569409 82569732 -66213740 - AluSx SINE Alu 0 312 1 290 210 98 20 chr11 82569811 82569943 -66213529 + MIR SINE MIR 37 178 -62 240 35 0 0 chr11 82569967 82569996 -66213476 + AluY SINE Alu 2 30 -269 1440 122 0 5 chr11 82569996 82570218 -66213254 + AluSg/x SINE Alu 85 305 -7 208 290 43 14 chr11 82572064 82572133 -66211339 - MIR3 SINE MIR -28 180 110 300 267 114 30 chr11 82575919 82576050 -66207422 + MIR3 SINE MIR 22 163 -45 487 290 76 59 chr11 82576490 82576728 -66206744 - MIR SINE MIR -19 243 2 247 288 144 0 chr11 82577868 82577987 -66205485 - MIR SINE MIR -94 168 30 196 241 35 35 chr11 82578249 82578307 -66205165 - MIR SINE MIR -113 149 92 295 195 12 12 chr11 82578464 82578546 -66204926 + (TA)n Simple_repeat Simple_repeat 1 82 0 2019 112 0 27 chr11 82578546 82578842 -66204630 - AluSx SINE Alu -24 288 1 469 246 176 7 chr11 82579129 82579271 -66204201 - MIR SINE MIR -14 248 83 1752 135 0 4 chr11 82579789 82580055 -66203417 + AluSx SINE Alu 40 304 -8 283 266 96 79 chr11 82581345 82581574 -66201898 + L2 LINE L2 3019 3251 -62 206 336 48 19 chr11 82581625 82581729 -66201743 + MIR SINE MIR 17 123 -85 372 247 52 13 chr11 82583040 82583155 -66200317 + MIR SINE MIR 71 190 -18 1397 175 3 69 chr11 82583470 82583773 -66199699 + AluJo SINE Alu 7 289 -23 238 279 100 100 chr11 82585127 82585367 -66198105 - L2 LINE L2 -218 3054 2815 378 259 129 9 chr11 82585424 82585540 -66197932 + L2 LINE L2 2334 2463 -851 360 311 120 60 chr11 82585676 82586126 -66197346 + L2 LINE L2 2837 3313 0 199 311 68 19 chr11 82586986 82587089 -66196383 - MIR SINE MIR -31 231 124 419 0 20 0 chr11 82587296 82587347 -66196125 + (TG)n Simple_repeat Simple_repeat 2 53 0 1983 105 0 4 chr11 82587347 82587624 -66195848 - AluSg SINE Alu -34 276 1 1236 224 57 43 chr11 82588984 82589017 -66194455 - L1ME LINE L1 -648 5514 5483 1763 166 17 0 chr11 82589017 82589319 -66194153 - AluJo SINE Alu -5 307 1 1236 224 57 43 chr11 82589319 82589590 -66193882 - L1ME LINE L1 -679 5483 5217 1880 128 10 39 chr11 82589590 82589896 -66193576 - AluSx SINE Alu -15 297 1 1236 224 57 43 chr11 82589896 82590060 -66193412 - L1ME LINE L1 -945 5217 5057 1741 198 0 7 chr11 82590060 82590368 -66193104 - AluJb SINE Alu -6 306 1 1236 224 57 43 chr11 82590368 82590532 -66192940 - L1ME LINE L1 -1105 5057 4882 255 204 23 11 chr11 82590534 82590622 -66192850 + (TA)n Simple_repeat Simple_repeat 1 89 0 415 230 28 73 chr11 82590622 82590800 -66192672 - L1ME LINE L1 -1300 4846 4677 1463 103 0 0 chr11 82590800 82590984 -66192488 + AluSg/x SINE Alu 88 271 -41 4818 71 25 8 chr11 82590987 82591140 -66192332 - THE1A-int LTR MaLR -922 658 509 2492 64 0 0 chr11 82591140 82591437 -66192035 - AluY SINE Alu -14 297 1 4818 71 25 8 chr11 82591437 82591930 -66191542 - THE1A-int LTR MaLR -1071 509 1 445 45 4 0 chr11 82591930 82591986 -66191486 - THE1A LTR MaLR 0 355 306 934 246 54 19 chr11 82591986 82592299 -66191173 - L1ME LINE L1 -1549 4597 4274 750 173 8 8 chr11 82592301 82592434 -66191038 - AluSq/x SINE Alu -178 135 3 1853 201 30 127 chr11 82592435 82593162 -66190310 - L1ME LINE L1 -1978 4168 3512 1356 227 28 33 chr11 82593158 82593554 -66189918 + L1ME1 LINE L1 5633 6026 -140 * 2963 103 12 10 chr11 82593763 82594181 -66189291 + L1PA10 LINE L1 5744 6162 -6 195 100 0 0 chr11 82594184 82594214 -66189258 + (A)n Simple_repeat Simple_repeat 1 30 0 1255 135 225 12 chr11 82594237 82594481 -66188991 + AluJo SINE Alu 1 296 -16 1725 180 46 26 chr11 82594533 82595110 -66188362 + L1M3 LINE L1 4905 5505 -678 * 11027 168 57 58 chr11 82595096 82595214 -66188258 + L1 LINE L1 4 121 -7047 2338 98 0 0 chr11 82595214 82595501 -66187971 - AluSg SINE Alu -23 287 1 11027 168 57 58 chr11 82595501 82597805 -66185667 + L1 LINE L1 121 2436 -4732 3923 184 58 28 chr11 82597803 82598203 -66185269 + L1 LINE L1 3520 3906 -3261 * 2573 69 0 0 chr11 82598203 82598508 -66184964 + AluY SINE Alu 1 305 -6 3923 184 58 28 chr11 82598508 82598865 -66184607 + L1 LINE L1 3906 4251 -2916 2222 116 3 7 chr11 82598865 82599168 -66184304 + AluSx SINE Alu 3 304 -8 2092 136 0 16 chr11 82599168 82599484 -66183988 + AluSx SINE Alu 1 311 -1 3923 184 58 28 chr11 82599484 82599541 -66183931 + L1 LINE L1 4251 4305 -2862 2337 88 0 20 chr11 82599541 82599847 -66183625 + AluSc SINE Alu 1 300 -9 3923 184 58 28 chr11 82599847 82600020 -66183452 + L1 LINE L1 4305 4540 -2627 1127 178 27 37 chr11 82600035 82600077 -66183395 + L1 LINE L1 6118 6159 -1008 1789 176 0 47 chr11 82600077 82600395 -66183077 + AluSx SINE Alu 1 303 -9 1127 178 27 37 chr11 82600395 82600650 -66182822 + L1 LINE L1 6159 6412 -755 845 189 105 7 chr11 82600763 82600989 -66182483 + L1 LINE L1 3043 3245 -2901 2222 116 3 7 chr11 82600989 82601292 -66182180 + AluSx SINE Alu 3 304 -8 2092 136 0 16 chr11 82601292 82601608 -66181864 + AluSx SINE Alu 1 311 -1 845 189 105 7 chr11 82601608 82601665 -66181807 + L1 LINE L1 3244 3355 -2791 247 153 0 106 chr11 82601665 82601754 -66181718 + Alu SINE Alu 1 48 -254 513 226 0 38 chr11 82602066 82602225 -66181247 + L1 LINE L1 3360 3512 -2634 795 137 30 36 chr11 82602249 82602291 -66181181 + L1MB2 LINE L1 5097 5138 -1008 1693 178 0 53 chr11 82602291 82602611 -66180861 + AluSx SINE Alu 1 303 -9 795 137 30 36 chr11 82602611 82602736 -66180736 + L1MB2 LINE L1 5138 5263 -883 1307 126 26 28 chr11 82602837 82603525 -66179947 + L1MB2 LINE L1 5350 6164 -7 833 252 62 29 chr11 82603529 82603835 -66179637 + L1MEc LINE L1 1442 1757 -4639 779 305 29 7 chr11 82603827 82604135 -66179337 - L1MDa LINE L1 -4355 2185 1871 * 2252 81 54 7 chr11 82604143 82604441 -66179031 - AluSq SINE Alu 0 313 2 1119 308 53 44 chr11 82604455 82604707 -66178765 - L1MDa LINE L1 -5262 1268 1020 2281 109 0 0 chr11 82604707 82605009 -66178463 - AluSx SINE Alu -10 302 1 1119 308 53 44 chr11 82605009 82605552 -66177920 - L1MDa LINE L1 -5510 1020 466 21 36 0 0 chr11 82605632 82605660 -66177812 + AT_rich Low_complexity Low_complexity 1 28 0 548 250 46 7 chr11 82605839 82605991 -66177481 - L1MDa LINE L1 -5901 629 472 264 320 191 0 chr11 82606577 82606724 -66176748 + MER5A DNA MER1_type 14 188 -1 422 271 96 32 chr11 82606868 82607056 -66176416 - MIR SINE MIR -61 201 2 390 293 8 16 chr11 82607072 82607195 -66176277 + MIR3 SINE MIR 37 158 -50 285 296 179 28 chr11 82607311 82607490 -66175982 + MIR3 SINE MIR 4 206 -56 1092 186 10 0 chr11 82607782 82607976 -66175496 + MER3 DNA MER1_type 14 209 0 1890 158 17 11 chr11 82608984 82609332 -66174140 + L1PA16 LINE L1 5817 6166 0 339 346 126 29 chr11 82609797 82610138 -66173334 + L2 LINE L2 2898 3271 -1 482 313 86 45 chr11 82610732 82611128 -66172344 + L2 LINE L2 2070 2481 -833 210 71 0 0 chr11 82611204 82611232 -66172240 + (T)n Simple_repeat Simple_repeat 1 28 0 23 0 0 0 chr11 82612231 82612254 -66171218 + AT_rich Low_complexity Low_complexity 1 23 0 2066 80 0 29 chr11 82613577 82613851 -66169621 + AluSg SINE Alu 33 298 -12 341 301 96 14 chr11 82614339 82614485 -66168987 - MIR SINE MIR -80 182 25 1471 149 63 48 chr11 82615212 82615306 -66168166 + AluJb SINE Alu 1 92 -220 2284 101 47 49 chr11 82615306 82615671 -66167801 + THE1B LTR MaLR 1 364 0 12018 80 11 1 chr11 82615673 82617235 -66166237 + THE1B-int LTR MaLR 3 1580 0 1770 138 107 58 chr11 82617235 82617582 -66165890 + THE1B LTR MaLR 1 364 0 1471 149 63 48 chr11 82617582 82617752 -66165720 + AluJb SINE Alu 91 273 -39 251 286 0 0 chr11 82617760 82617830 -66165642 + GA-rich Low_complexity Low_complexity 4 73 0 180 274 231 8 chr11 82618045 82618162 -66165310 - MIR SINE MIR -108 154 12 215 149 45 90 chr11 82618398 82618465 -66165007 + MIR SINE MIR 37 100 -162 250 164 0 33 chr11 82619251 82619312 -66164160 - L1MC4 LINE L1 -1344 6698 6640 1558 195 0 19 chr11 82619332 82619650 -66163822 + AluSx SINE Alu 1 312 0 925 158 0 38 chr11 82619666 82619824 -66163648 + FRAM SINE Alu 1 152 -24 571 128 0 0 chr11 82619825 82619903 -66163569 - FRAM SINE Alu -79 97 20 271 362 94 0 chr11 82620037 82620186 -66163286 + L2 LINE L2 3108 3270 -2 2279 88 0 0 chr11 82620314 82620625 -66162847 - AluY SINE Alu 0 311 1 4302 147 24 11 chr11 82620821 82621523 -66161949 + MER50 LTR ERV1 1 711 -23 2187 130 0 0 chr11 82621577 82621878 -66161594 - AluSq SINE Alu -12 301 1 2029 138 16 0 chr11 82621881 82622186 -66161286 - AluSx SINE Alu -2 310 1 1103 163 22 0 chr11 82622227 82622411 -66161061 - AluJo SINE Alu -12 300 113 248 231 0 0 chr11 82622418 82622457 -66161015 + Alu SINE Alu 219 257 -45 1758 130 59 0 chr11 82622799 82623053 -66160419 - AluSc SINE Alu -40 269 1 1810 179 0 7 chr11 82623062 82623353 -66160119 - AluJo SINE Alu -23 289 1 302 242 41 7 chr11 82623796 82623899 -66159573 + MIR SINE MIR 33 140 -68 285 239 28 0 chr11 82623990 82624061 -66159411 + L2 LINE L2 3235 3307 -6 1770 190 7 0 chr11 82624277 82624587 -66158885 + AluJo SINE Alu 1 312 0 1950 213 61 14 chr11 82624717 82625158 -66158314 + MLT1C LTR MaLR 6 467 0 276 212 151 55 chr11 82625647 82625819 -66157653 + MIR SINE MIR 16 198 -10 1228 148 59 0 chr11 82625840 82626076 -66157396 + L1MB8 LINE L1 5658 5907 -271 389 214 5 38 chr11 82626168 82626279 -66157193 + L1MB8 LINE L1 5911 6024 -160 306 246 0 0 chr11 82626310 82626379 -66157093 + MIR SINE MIR 26 94 -114 311 293 146 0 chr11 82627158 82627281 -66156191 + MIR SINE MIR 48 188 -74 340 251 38 58 chr11 82627548 82627695 -66155777 - MIR SINE MIR -67 141 30 413 318 0 0 chr11 82627784 82627894 -66155578 + MIR3 SINE MIR 51 160 -48 923 199 0 28 chr11 82628343 82628524 -66154948 - AluJb SINE Alu 0 312 137 1751 114 19 0 chr11 82628633 82628895 -66154577 - L1PA13 LINE L1 0 6163 5897 257 278 61 17 chr11 82628913 82629028 -66154444 + MIR SINE MIR 87 206 -56 301 298 61 9 chr11 82629504 82629618 -66153854 - MIR SINE MIR -56 152 33 2289 104 3 0 chr11 82630238 82630535 -66152937 - AluSq SINE Alu -15 298 1 528 161 0 0 chr11 82630719 82630806 -66152666 + FLAM_C SINE Alu 29 115 -28 294 143 0 0 chr11 82630815 82630864 -66152608 + (TATG)n Simple_repeat Simple_repeat 4 52 0 997 148 11 40 chr11 82630896 82631072 -66152400 + AluJb SINE Alu 131 301 -11 186 266 221 0 chr11 82632017 82632130 -66151342 + MIR SINE MIR 50 187 -75 941 227 82 5 chr11 82632623 82632830 -66150642 + MER58A DNA MER1_type 1 223 -1 2135 94 14 0 chr11 82633117 82633393 -66150079 + AluY SINE Alu 1 280 -31 709 87 19 0 chr11 82633498 82633601 -66149871 + AluSg/x SINE Alu 189 293 -16 344 135 14 0 chr11 82633602 82633676 -66149796 + (TA)n Simple_repeat Simple_repeat 1 75 0 2297 106 0 0 chr11 82634329 82634631 -66148841 + AluY SINE Alu 1 302 -9 2096 142 3 3 chr11 82634817 82635119 -66148353 + AluSx SINE Alu 1 302 -10 850 144 0 15 chr11 82635160 82635292 -66148180 - FLAM_C SINE Alu -1 142 13 274 348 74 7 chr11 82635307 82635442 -66148030 - MIR SINE MIR -116 146 3 2449 80 0 0 chr11 82635843 82636143 -66147329 - AluSx SINE Alu -12 300 1 2283 89 0 10 chr11 82637176 82637346 -66146126 - AluSp SINE Alu -10 303 136 2103 116 0 13 chr11 82637346 82637647 -66145825 - AluSq SINE Alu -16 297 1 2283 89 0 10 chr11 82637647 82637778 -66145694 - AluSp SINE Alu -177 136 5 2345 90 7 0 chr11 82637855 82638154 -66145318 - AluSp SINE Alu -12 301 1 2553 164 79 13 chr11 82638222 82638769 -66144703 + L1MB4 LINE L1 5598 6180 0 1452 124 0 0 chr11 82638782 82638975 -66144497 + AluSg/x SINE Alu 98 290 -20 2012 132 34 0 chr11 82639183 82639478 -66143994 - AluSx SINE Alu -7 305 1 300 336 44 15 chr11 82641146 82641283 -66142189 + MIR SINE MIR 2 142 -120 1875 171 7 0 chr11 82641936 82642241 -66141231 + AluJb SINE Alu 1 307 -5 1746 150 58 0 chr11 82642467 82642741 -66140731 + AluJo SINE Alu 7 296 -16 2192 52 0 0 chr11 82643562 82643811 -66139661 + AluY SINE Alu 42 290 -21 2234 124 0 0 chr11 82643822 82644121 -66139351 + AluSx SINE Alu 5 303 -9 1626 119 129 7 chr11 82644250 82644528 -66138944 - AluSx SINE Alu 0 312 1 253 281 150 26 chr11 82644594 82644747 -66138725 - L3 LINE CR1 -148 1429 1258 357 299 8 8 chr11 82644848 82644965 -66138507 - L2 LINE L2 -9 3304 3188 248 202 93 93 chr11 82645234 82645273 -66138199 - L1MC4a LINE L1 -1883 5925 5887 1582 141 112 0 chr11 82645273 82645542 -66137930 - AluJb SINE Alu -10 302 4 248 202 93 93 chr11 82645542 82645555 -66137917 - L1MC4a LINE L1 -1921 5887 5875 306 50 0 0 chr11 82645555 82645595 -66137877 + (TG)n Simple_repeat Simple_repeat 1 40 0 248 202 93 93 chr11 82645595 82645670 -66137802 - L1MC4a LINE L1 -1932 5876 5797 2531 201 74 30 chr11 82645671 82646065 -66137407 - MLT1E LTR MaLR 0 593 165 1587 174 47 0 chr11 82646065 82646340 -66137132 + AluJb SINE Alu 1 288 -24 2531 201 74 30 chr11 82646340 82646513 -66136959 - MLT1E LTR MaLR -428 165 1 479 251 16 14 chr11 82646516 82646695 -66136777 - L1MC4a LINE L1 -323 5798 5622 1134 83 0 0 chr11 82646751 82646884 -66136588 - AluSp SINE Alu -180 133 1 629 266 181 0 chr11 82646884 82647121 -66136351 - L1MC4a LINE L1 -2172 5636 5357 1988 145 3 0 chr11 82647131 82647414 -66136058 - AluSx SINE Alu -28 284 1 688 189 30 23 chr11 82647416 82647548 -66135924 - AluJo SINE Alu -178 134 2 2140 130 0 0 chr11 82647598 82647890 -66135582 - AluSx SINE Alu -20 292 1 842 160 0 0 chr11 82647936 82648061 -66135411 + AluJb SINE Alu 1 125 -187 362 202 62 106 chr11 82648077 82648285 -66135187 + L1MC/D LINE L1 5317 5515 -2293 * 564 309 70 37 chr11 82648274 82648944 -66134528 + L1M4 LINE L1 4229 4920 -1226 359 297 55 25 chr11 82649017 82649253 -66134219 + L1M4 LINE L1 5030 5272 -874 1806 157 0 39 chr11 82649263 82649569 -66133903 + AluJb SINE Alu 7 300 -12 688 190 13 19 chr11 82649573 82649731 -66133741 + AluJb SINE Alu 137 293 -19 414 111 0 16 chr11 82649746 82649809 -66133663 + AluY SINE Alu 2 63 -255 2436 173 53 26 chr11 82649810 82650302 -66133170 + LTR22 LTR ERVK 1 505 -4 1859 89 8 4 chr11 82650303 82650549 -66132923 + AluY SINE Alu 56 302 -9 1486 112 156 63 chr11 82650552 82650685 -66132787 + AluSg SINE Alu 1 120 -190 2271 100 3 13 chr11 82650685 82650996 -66132476 + AluSc SINE Alu 1 308 -1 1486 112 156 63 chr11 82650996 82651131 -66132341 + AluSg SINE Alu 120 294 -16 2141 97 0 49 chr11 82652871 82653179 -66130293 - AluSx SINE Alu -19 293 1 220 235 277 0 chr11 82653219 82653338 -66130134 + L2 LINE L2 3162 3313 0 427 194 97 11 chr11 82653905 82653998 -66129474 - MIR SINE MIR -139 123 23 238 297 29 63 chr11 82654034 82654194 -66129278 - MIR SINE MIR -79 183 28 588 230 48 48 chr11 82654194 82654403 -66129069 + MER58C DNA MER1_type 3 211 -4 238 297 29 63 chr11 82654403 82654417 -66129055 - MIR SINE MIR -234 28 15 1646 180 7 27 chr11 82654672 82654966 -66128506 + AluJo SINE Alu 1 288 -24 326 269 65 19 chr11 82655904 82656012 -66127460 + MER82 DNA MER2_type 540 652 -1 207 100 0 0 chr11 82656043 82656073 -66127399 + (CATATA)n Simple_repeat Simple_repeat 6 35 0 2179 110 0 10 chr11 82656115 82656416 -66127056 + AluSx SINE Alu 1 298 -14 189 0 0 0 chr11 82656543 82656564 -66126908 + (A)n Simple_repeat Simple_repeat 1 21 0 1222 141 141 13 chr11 82657125 82657359 -66126113 + L1MD3 LINE L1 7732 7995 0 1703 163 0 39 chr11 82657369 82657676 -66125796 + AluJo SINE Alu 1 295 -17 420 243 49 35 chr11 82657774 82657918 -66125554 - MIR SINE MIR -53 209 64 1904 149 3 13 chr11 82657925 82658226 -66125246 - AluJo SINE Alu -11 301 4 375 248 153 6 chr11 82659008 82659100 -66124372 + MER5A DNA MER1_type 10 87 -102 1855 145 7 7 chr11 82659100 82659396 -66124076 - AluJb SINE Alu -16 296 1 375 248 153 6 chr11 82659396 82659460 -66124012 + MER5A DNA MER1_type 87 189 0 318 237 148 41 chr11 82659495 82659664 -66123808 + MIR SINE MIR 57 243 -19 2061 86 15 95 chr11 82660822 82661148 -66122324 + AluSq SINE Alu 1 300 -13 1641 177 45 75 chr11 82661206 82661670 -66121802 + LTR7 LTR ERV1 1 450 0 9480 205 21 42 chr11 82661670 82664890 -66118582 + HERVH LTR ERV1 1 3124 -3524 3782 120 0 5 chr11 82664885 82665436 -66118036 + HERVH LTR ERV1 3329 3876 -3837 * 2841 210 0 0 chr11 82665432 82665952 -66117520 + HERVH LTR ERV1 7038 7557 -156 * 289 336 9 9 chr11 82666546 82666659 -66116813 + HERVH LTR ERV1 874 986 -7271 330 230 92 17 chr11 82666778 82666933 -66116539 + HERVH LTR ERV1 6543 7713 0 1567 191 32 75 chr11 82666933 82667403 -66116069 + LTR7 LTR ERV1 1 450 0 245 257 71 0 chr11 82667431 82667501 -66115971 - L3 LINE CR1 -174 1403 1329 405 186 0 0 chr11 82667683 82667753 -66115719 - AluJo SINE Alu -11 301 232 974 109 22 0 chr11 82667754 82667892 -66115580 - AluJo SINE Alu -171 141 1 245 270 70 59 chr11 82667941 82668211 -66115261 + L1ME LINE L1 5591 5863 -258 2168 120 0 0 chr11 82668334 82668625 -66114847 - AluSx SINE Alu -21 291 1 2448 77 7 0 chr11 82668648 82668948 -66114524 - AluY SINE Alu -9 302 1 2313 94 7 0 chr11 82668949 82669246 -66114226 - AluSp SINE Alu -14 299 1 712 211 33 75 chr11 82669246 82669344 -66114128 - L1 LINE L1 -901 5245 5144 2149 93 24 3 chr11 82669344 82669635 -66113837 + AluSx SINE Alu 1 297 -15 712 211 33 75 chr11 82669635 82669749 -66113723 - L1 LINE L1 -1002 5144 5042 225 0 0 0 chr11 82669749 82669774 -66113698 + (T)n Simple_repeat Simple_repeat 1 25 0 2100 135 0 13 chr11 82670331 82670512 -66112960 - AluSx SINE Alu 0 312 135 1895 108 0 12 chr11 82670512 82670771 -66112701 - AluSx SINE Alu -13 299 44 2100 135 0 13 chr11 82670771 82670901 -66112571 - AluSx SINE Alu -177 135 5 1005 132 0 0 chr11 82671403 82671539 -66111933 + AluSq/x SINE Alu 1 136 -176 2223 117 3 0 chr11 82671540 82671838 -66111634 + AluSx SINE Alu 1 299 -13 2372 74 0 14 chr11 82671841 82672138 -66111334 + AluY SINE Alu 3 295 -16 2142 97 0 49 chr11 82673878 82674186 -66109286 - AluSx SINE Alu -19 293 1 220 235 277 0 chr11 82674226 82674345 -66109127 + L2 LINE L2 3162 3313 0 427 194 97 11 chr11 82674913 82675006 -66108466 - MIR SINE MIR -139 123 23 248 291 29 63 chr11 82675042 82675202 -66108270 - MIR SINE MIR -79 183 28 598 225 42 61 chr11 82675202 82675415 -66108057 + MER58C DNA MER1_type 3 211 -4 248 291 29 63 chr11 82675415 82675429 -66108043 - MIR SINE MIR -234 28 15 1661 177 7 27 chr11 82675684 82675978 -66107494 + AluJo SINE Alu 1 288 -24 351 259 65 19 chr11 82676916 82677024 -66106448 + MER82 DNA MER2_type 540 652 -1 212 242 15 30 chr11 82677025 82677091 -66106381 + (TATATG)n Simple_repeat Simple_repeat 6 70 0 1930 150 3 3 chr11 82677125 82677419 -66106053 + AluSx SINE Alu 1 294 -18 525 326 6 6 chr11 82677423 82677595 -66105877 - ERVL LTR ERVL -3528 2236 2065 1772 134 11 7 chr11 82677623 82677899 -66105573 + AluSx SINE Alu 1 277 -35 225 0 0 0 chr11 82677905 82677930 -66105542 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 1022 75 8 0 chr11 82678035 82678168 -66105304 + AluJb SINE Alu 179 312 0 213 123 62 138 chr11 82678235 82678300 -66105172 + MIR SINE MIR 45 104 -158 351 152 188 18 chr11 82678347 82678459 -66105013 - MIR SINE MIR 0 262 132 262 237 0 0 chr11 82679652 82679711 -66103761 + MIR SINE MIR 82 140 -68 1179 154 141 13 chr11 82681561 82681795 -66101677 + L1MD3 LINE L1 7732 7995 0 1736 171 0 31 chr11 82681805 82682127 -66101345 + AluJo SINE Alu 1 312 0 2162 102 0 11 chr11 82682147 82682455 -66101017 - AluSx SINE Alu 0 305 1 2250 106 3 7 chr11 82682513 82682806 -66100666 - AluSq SINE Alu -21 292 1 2000 116 0 34 chr11 82683199 82683516 -66099956 + AluSx SINE Alu 1 307 0 1723 159 7 14 chr11 82683559 82683855 -66099617 + AluY SINE Alu 1 294 -17 203 212 155 0 chr11 82684215 82684348 -66099124 - MIR SINE MIR -50 212 94 271 286 170 9 chr11 82684355 82684467 -66099005 - MER5A DNA MER1_type -1 188 59 408 238 12 0 chr11 82684546 82684630 -66098842 + FRAM/FAM SINE Alu 1 84 -92 1631 175 0 18 chr11 82684632 82684912 -66098560 + AluJo SINE Alu 21 295 -17 2492 59 10 0 chr11 82684912 82685215 -66098257 + AluY SINE Alu 1 306 -5 2413 98 0 0 chr11 82685453 82685760 -66097712 + AluSx SINE Alu 1 307 -5 1676 150 106 0 chr11 82685779 82686052 -66097420 + AluSx SINE Alu 1 302 -10 2337 103 0 13 chr11 82686534 82686846 -66096626 - AluSg SINE Alu -2 308 1 1913 167 7 7 chr11 82686941 82687246 -66096226 + AluSx SINE Alu 5 309 -3 35 24 0 0 chr11 82687276 82687318 -66096154 + AT_rich Low_complexity Low_complexity 1 42 0 279 308 44 57 chr11 82687486 82687645 -66095827 - MIR SINE MIR -59 203 47 618 105 18 70 chr11 82688412 82688526 -66094946 - FLAM_C SINE Alu 0 143 36 614 216 64 0 chr11 82688563 82688688 -66094784 + FLAM_A SINE Alu 1 133 0 463 196 101 14 chr11 82689087 82689225 -66094247 + L1ME4a LINE L1 5960 6109 -12 224 221 206 0 chr11 82689346 82689414 -66094058 + MIR SINE MIR 117 198 -64 1948 149 3 0 chr11 82689461 82689756 -66093716 - AluJb SINE Alu -13 299 4 2324 92 10 10 chr11 82690145 82690450 -66093022 + AluSg SINE Alu 6 310 0 881 127 0 0 chr11 82691435 82691553 -66091919 + AluJb SINE Alu 1 118 -194 201 311 122 0 chr11 82691953 82692027 -66091445 + L2 LINE L2 3156 3238 -34 2518 53 0 0 chr11 82692143 82692446 -66091026 - AluY SINE Alu -8 303 1 230 315 79 31 chr11 82692449 82692576 -66090896 + MIR SINE MIR 117 249 -13 1944 119 7 7 chr11 82692598 82692730 -66090742 + AluSp SINE Alu 1 132 -181 1981 116 0 13 chr11 82692730 82693031 -66090441 + AluSq SINE Alu 1 297 -16 1944 119 7 7 chr11 82693031 82693201 -66090271 + AluSp SINE Alu 131 303 -10 2328 80 0 0 chr11 82694234 82694535 -66088937 + AluSx SINE Alu 1 301 -11 314 338 86 7 chr11 82694936 82695075 -66088397 + MIR SINE MIR 3 152 -110 1336 134 73 40 chr11 82695086 82695168 -66088304 + AluJb SINE Alu 13 91 -221 2288 101 47 49 chr11 82695168 82695533 -66087939 + THE1B LTR MaLR 1 364 0 12095 80 10 1 chr11 82695535 82697098 -66086374 + THE1B-int LTR MaLR 3 1580 0 1772 138 107 58 chr11 82697098 82697445 -66086027 + THE1B LTR MaLR 1 364 0 1336 134 73 40 chr11 82697445 82697605 -66085867 + AluJb SINE Alu 90 267 -45 264 287 0 11 chr11 82697606 82697693 -66085779 + GA-rich Low_complexity Low_complexity 4 89 0 223 274 231 8 chr11 82697908 82698025 -66085447 - MIR SINE MIR -108 154 12 240 149 45 90 chr11 82698261 82698328 -66085144 + MIR SINE MIR 37 100 -162 243 164 0 33 chr11 82699114 82699175 -66084297 - L1MC4 LINE L1 -1344 6698 6640 2054 142 7 0 chr11 82699195 82699505 -66083967 + AluSx SINE Alu 1 312 0 884 156 0 50 chr11 82699520 82699680 -66083792 + FRAM SINE Alu 1 152 -14 574 128 0 0 chr11 82699681 82699759 -66083713 - FRAM SINE Alu -79 97 20 323 362 94 0 chr11 82699893 82700042 -66083430 + L2 LINE L2 3108 3270 -2 2155 88 0 0 chr11 82700170 82700481 -66082991 - AluY SINE Alu 0 311 1 4332 147 24 11 chr11 82700677 82701379 -66082093 + MER50 LTR ERV1 1 711 -23 2148 113 0 3 chr11 82701433 82701735 -66081737 - AluSq SINE Alu -12 301 1 1910 138 16 0 chr11 82701738 82702043 -66081429 - AluSx SINE Alu -2 310 1 1035 163 22 0 chr11 82702084 82702268 -66081204 - AluJo SINE Alu -12 300 113 248 231 0 0 chr11 82702275 82702314 -66081158 + Alu SINE Alu 219 257 -45 2023 106 3 23 chr11 82702668 82702970 -66080502 - AluSc SINE Alu -13 296 1 212 341 39 31 chr11 82702971 82703100 -66080372 + L2 LINE L2 2230 2359 -955 644 192 30 91 chr11 82703101 82703195 -66080277 + L1ME3A LINE L1 5618 5695 -475 2489 54 0 0 chr11 82703195 82703491 -66079981 + AluY SINE Alu 1 296 -15 644 192 30 91 chr11 82703491 82703594 -66079878 + L1ME3A LINE L1 5695 5803 -367 989 191 86 9 chr11 82703600 82703810 -66079662 + Charlie1 DNA MER1_type 1 226 -2535 507 146 106 8 chr11 82703808 82703931 -66079541 + Charlie1 DNA MER1_type 2623 2757 -4 * 769 194 104 132 chr11 82703931 82704126 -66079346 + L1ME3A LINE L1 5798 5980 -190 1869 144 10 0 chr11 82704126 82704424 -66079048 + AluJb SINE Alu 1 301 -11 769 194 104 132 chr11 82704424 82704593 -66078879 + L1ME3A LINE L1 5980 6152 -18 618 235 235 17 chr11 82704600 82704949 -66078523 - HAL1 LINE L1 -913 1594 1170 230 216 54 14 chr11 82705008 82705082 -66078390 - HAL1 LINE L1 -1456 1051 975 276 88 0 0 chr11 82705223 82705257 -66078215 - Alu SINE Alu -263 38 5 1712 171 3 3 chr11 82705377 82705664 -66077808 + AluJo SINE Alu 1 287 -25 988 146 0 7 chr11 82705671 82705822 -66077650 - AluJo SINE Alu -162 150 1 308 402 100 7 chr11 82705852 82706143 -66077329 + L2 LINE L2 2593 2910 -404 * 411 242 134 20 chr11 82706137 82706286 -66077186 - MIR SINE MIR -85 177 12 624 311 94 65 chr11 82706314 82706890 -66076582 + L2 LINE L2 2503 3121 -192 2394 60 3 0 chr11 82706890 82707191 -66076281 - AluY SINE Alu -9 302 1 624 311 94 65 chr11 82707191 82707386 -66076086 + L2 LINE L2 3121 3309 -4 409 207 24 0 chr11 82707476 82707558 -66075914 - U6 snRNA snRNA 0 107 24 6169 109 47 48 chr11 82707559 82707676 -66075796 - Tigger1 DNA MER2_type 0 2418 2302 2218 58 7 7 chr11 82707676 82707971 -66075501 + AluY SINE Alu 1 295 -16 6169 109 47 48 chr11 82707971 82708195 -66075277 - Tigger1 DNA MER2_type -116 2302 2079 2149 118 0 0 chr11 82708195 82708492 -66074980 - AluSq SINE Alu -15 298 2 6169 109 47 48 chr11 82708492 82709131 -66074341 - Tigger1 DNA MER2_type -339 2079 1436 1652 181 0 3 chr11 82709131 82709424 -66074048 + AluJb SINE Alu 5 296 -16 6169 109 47 48 chr11 82709424 82709484 -66073988 - Tigger1 DNA MER2_type -982 1436 1377 918 154 158 103 chr11 82709488 82709621 -66073851 + AluJo SINE Alu 5 129 -183 1977 137 3 10 chr11 82709621 82709935 -66073537 + AluSx SINE Alu 1 312 0 918 154 158 103 chr11 82709935 82709949 -66073523 + AluJo SINE Alu 129 141 -171 1740 167 13 3 chr11 82709949 82710248 -66073224 + AluJb SINE Alu 5 306 -6 918 154 158 103 chr11 82710248 82710391 -66073081 + AluJo SINE Alu 141 312 0 853 205 6 0 chr11 82710441 82710607 -66072865 + AluJb SINE Alu 129 295 -17 5893 117 58 15 chr11 82710609 82710950 -66072522 - Tigger1 DNA MER2_type -1123 1295 970 1973 95 81 0 chr11 82710950 82711234 -66072238 - AluSp SINE Alu -6 307 1 5893 117 58 15 chr11 82711234 82712045 -66071427 - Tigger1 DNA MER2_type -1448 970 1 2102 95 6 25 chr11 82712119 82712435 -66071037 + AluSx SINE Alu 1 310 -2 217 319 29 0 chr11 82712661 82712730 -66070742 + GA-rich Low_complexity Low_complexity 4 74 0 484 306 188 3 chr11 82712844 82713263 -66070209 + L2 LINE L2 2780 3306 -7 255 273 162 10 chr11 82713280 82713379 -66070093 - MIR SINE MIR -110 152 39 201 209 47 0 chr11 82714092 82714135 -66069337 - L2 LINE L2 -310 2962 2918 190 189 151 0 chr11 82714357 82714410 -66069062 + MIR SINE MIR 81 141 -121 22 0 0 0 chr11 82714410 82714432 -66069040 + AT_rich Low_complexity Low_complexity 1 22 0 1789 98 8 15 chr11 82714458 82714723 -66068749 + AluSq SINE Alu 1 263 -50 365 247 31 0 chr11 82714764 82714861 -66068611 + MIR SINE MIR 148 247 -15 275 345 36 55 chr11 82714917 82715058 -66068414 + L2 LINE L2 2171 2310 -1004 1446 182 38 7 chr11 82715058 82715349 -66068123 - AluJo SINE Alu -12 300 1 275 345 36 55 chr11 82715349 82715372 -66068100 + L2 LINE L2 2310 2332 -982 1206 180 49 12 chr11 82715372 82715616 -66067856 - MLT1D LTR MaLR 0 505 253 1979 120 21 0 chr11 82715959 82716250 -66067222 - AluSg SINE Alu -13 297 1 2024 107 7 0 chr11 82716477 82716766 -66066706 + AluSx SINE Alu 6 296 -16 1935 139 3 10 chr11 82716768 82717077 -66066395 + AluSx SINE Alu 1 307 -5 248 200 129 93 chr11 82717321 82717378 -66066094 + MLT1L LTR MaLR 466 520 -95 378 0 0 0 chr11 82717378 82717420 -66066052 + (CA)n Simple_repeat Simple_repeat 2 43 0 2211 167 58 29 chr11 82717421 82717869 -66065603 - LOR1b LTR ERV1 0 461 1 248 200 129 93 chr11 82717869 82717949 -66065523 + MLT1L LTR MaLR 519 610 -5 720 335 92 22 chr11 82717985 82718400 -66065072 + L2 LINE L2 2829 3272 0 237 119 0 194 chr11 82718426 82718493 -66064979 - AluSp SINE Alu -109 194 141 1926 126 10 3 chr11 82718537 82718830 -66064642 + AluSg SINE Alu 13 307 -3 1737 156 0 41 chr11 82719247 82719561 -66063911 + AluJo SINE Alu 1 301 -11 1100 146 109 0 chr11 82719618 82719810 -66063662 - MLT1F1 LTR MaLR -5 562 350 436 151 0 0 chr11 82719829 82719902 -66063570 - AluS SINE Alu -244 74 2 1488 168 34 90 chr11 82720670 82720893 -66062579 - MLT1A1 LTR MaLR 0 365 171 1855 151 0 0 chr11 82720893 82721200 -66062272 - AluSx SINE Alu 0 307 1 1488 168 34 90 chr11 82721200 82721362 -66062110 - MLT1A1 LTR MaLR -194 171 1 325 215 15 0 chr11 82721413 82721478 -66061994 + L2 LINE L2 3207 3272 0 2302 89 0 3 chr11 82721530 82721833 -66061639 + AluSq SINE Alu 1 302 -11 369 209 116 0 chr11 82721918 82722004 -66061468 + MIR SINE MIR 54 149 -59 205 167 0 0 chr11 82722331 82722367 -66061105 + (TG)n Simple_repeat Simple_repeat 2 37 0 476 114 0 0 chr11 82722485 82722555 -66060917 - AluJo SINE Alu -16 296 227 192 40 0 0 chr11 82722728 82722753 -66060719 + (TATG)n Simple_repeat Simple_repeat 3 27 0 1390 159 20 28 chr11 82722753 82723005 -66060467 - AluJo SINE Alu -62 250 1 2084 104 3 3 chr11 82723016 82723313 -66060159 - AluSx SINE Alu -14 298 2 1405 103 15 0 chr11 82723354 82723549 -66059923 - AluSg/x SINE Alu -30 280 83 365 331 14 33 chr11 82723794 82723984 -66059488 - MIR SINE MIR -23 239 6 1942 128 7 0 chr11 82724119 82724416 -66059056 - AluSx SINE Alu -13 299 1 1719 150 25 0 chr11 82724565 82724839 -66058633 - AluJb SINE Alu -31 281 1 505 294 101 56 chr11 82725128 82725434 -66058038 - LTR16C LTR ERVL 0 491 172 914 308 26 56 chr11 82726024 82726276 -66057196 - ERVL LTR ERVL -3284 2480 2245 2099 103 0 26 chr11 82726276 82726578 -66056894 + AluSx SINE Alu 1 294 -18 914 308 26 56 chr11 82726578 82726754 -66056718 - ERVL LTR ERVL -3519 2245 2065 293 231 77 77 chr11 82726757 82726782 -66056690 + MIR SINE MIR 120 144 -118 1735 137 4 4 chr11 82726782 82727059 -66056413 + AluSx SINE Alu 1 277 -35 225 0 0 0 chr11 82727064 82727089 -66056383 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 293 231 77 77 chr11 82727089 82727187 -66056285 + MIR SINE MIR 147 249 -13 893 253 43 20 chr11 82727291 82727544 -66055928 + MIR SINE MIR 4 262 0 1647 145 83 0 chr11 82727545 82727821 -66055651 - AluJb SINE Alu -13 299 1 549 125 12 0 chr11 82727945 82728025 -66055447 - MER72 LTR ERV1 -57 665 585 777 249 48 14 chr11 82728073 82728282 -66055190 - MIR SINE MIR 0 262 47 182 397 0 0 chr11 82728492 82728560 -66054912 + L2 LINE L2 3205 3272 0 1711 167 24 29 chr11 82728619 82728960 -66054512 - MLT2C1 LTR ERVL -56 341 3 1569 164 59 3 chr11 82728961 82729247 -66054225 + AluJb SINE Alu 1 302 -10 898 281 22 50 chr11 82729681 82729774 -66053698 - L1ME4a LINE L1 -226 5895 5801 1987 110 3 33 chr11 82729774 82730075 -66053397 + AluSx SINE Alu 1 292 -20 898 281 22 50 chr11 82730075 82730398 -66053074 - L1ME4a LINE L1 -320 5801 5491 689 288 33 14 chr11 82731058 82731270 -66052202 + MIR SINE MIR 47 262 0 1677 151 32 3 chr11 82731272 82731556 -66051916 - AluSx SINE Alu -20 292 1 417 150 0 0 chr11 82731865 82731925 -66051547 - AluJ/FLAM SINE Alu -251 61 2 2025 110 0 0 chr11 82732278 82732597 -66050875 + AluSx SINE Alu 1 319 0 724 246 179 0 chr11 82732607 82732827 -66050645 - MIR SINE MIR 0 262 7 194 322 213 27 chr11 82732817 82733118 -66050354 + L2 LINE L2 2873 3229 -43 * 478 264 31 0 chr11 82733170 82733299 -66050173 - MIR SINE MIR -57 151 19 2274 107 0 0 chr11 82733664 82733973 -66049499 - AluSx SINE Alu -3 309 1 1723 173 20 0 chr11 82733974 82734275 -66049197 - AluJb SINE Alu -5 307 1 1766 163 20 0 chr11 82734276 82734576 -66048896 - AluJo SINE Alu -6 306 1 241 280 135 102 chr11 82734593 82734897 -66048575 + L2 LINE L2 2941 3254 -18 260 223 21 64 chr11 82734944 82735038 -66048434 + MER91C DNA MER1_type 17 106 -34 502 250 96 32 chr11 82735051 82735239 -66048233 + MIR SINE MIR 28 227 -35 293 216 206 0 chr11 82735644 82735741 -66047731 + MIR SINE MIR 15 131 -131 873 197 14 14 chr11 82735742 82735952 -66047520 - MLT1B LTR MaLR 0 390 170 373 225 17 69 chr11 82736057 82736220 -66047252 - HsTC2 DNA Tc2 -28 1870 1 1453 122 40 115 chr11 82736565 82736886 -66046586 + AluJb SINE Alu 1 297 -15 313 233 69 0 chr11 82736918 82737049 -66046423 + MIR SINE MIR 1 140 -68 256 241 138 26 chr11 82737063 82737179 -66046293 - L2 LINE L2 -2 3270 3142 288 339 117 33 chr11 82737209 82737389 -66046083 - MIR SINE MIR -48 214 20 200 304 59 59 chr11 82737974 82738109 -66045363 - MIR3 SINE MIR -26 182 48 221 196 20 20 chr11 82738224 82738275 -66045197 - L2 LINE L2 -5 3308 3258 243 308 19 28 chr11 82738291 82738398 -66045074 + MIR SINE MIR 107 212 -50 264 289 161 13 chr11 82738489 82738638 -66044834 + L2 LINE L2 3130 3300 -13 1615 176 50 58 chr11 82738641 82738856 -66044616 - MLT1A1 LTR MaLR 0 365 150 2003 107 3 7 chr11 82738856 82739145 -66044327 - AluSp SINE Alu -22 291 4 2019 96 19 54 chr11 82739145 82739458 -66044014 - AluSx SINE Alu -10 302 1 1615 176 50 58 chr11 82739458 82739600 -66043872 - MLT1A1 LTR MaLR -213 152 10 4310 101 16 23 chr11 82739725 82740341 -66043131 - LTR9 LTR ERV1 0 612 1 3508 132 54 37 chr11 82740384 82740428 -66043044 - LTR58 LTR ERV1 0 679 637 2123 96 0 35 chr11 82740428 82740740 -66042732 + AluSc SINE Alu 1 301 -8 3508 132 54 37 chr11 82740740 82741363 -66042109 - LTR58 LTR ERV1 -42 637 1 345 281 53 0 chr11 82741802 82741916 -66041556 - MER63A DNA MER1_type -2 208 89 2112 92 0 75 chr11 82741913 82742248 -66041224 - AluSp SINE Alu -3 310 1 280 224 45 0 chr11 82742260 82742327 -66041145 - MER63A DNA MER1_type 0 116 47 1836 152 7 16 chr11 82743445 82743748 -66039724 - AluSx SINE Alu -12 300 1 1850 108 15 0 chr11 82743757 82744025 -66039447 - AluSc SINE Alu -2 307 36 379 289 162 15 chr11 82745102 82745306 -66038166 - MIR SINE MIR -17 245 12 572 161 52 84 chr11 82745349 82745504 -66037968 - MIR SINE MIR -44 218 69 1724 134 0 0 chr11 82745739 82745986 -66037486 - AluSq SINE Alu -65 248 2 274 307 138 46 chr11 82746516 82746734 -66036738 - MARNA DNA Mariner -260 326 89 266 291 71 31 chr11 82746641 82746768 -66036704 + MARNA DNA Mariner 396 527 -59 * 587 236 76 6 chr11 82746769 82746926 -66036546 + L3 LINE CR1 1319 1486 -91 273 250 0 17 chr11 82748833 82748893 -66034579 + polypurine Low_complexity Low_complexity 6 64 0 397 226 0 109 chr11 82748900 82749037 -66034435 - MER5B DNA MER1_type -56 122 1 223 291 74 86 chr11 82749075 82749122 -66034350 - MIR SINE MIR -43 219 173 2249 106 0 0 chr11 82749122 82749425 -66034047 + AluSq SINE Alu 1 303 -10 223 291 74 86 chr11 82749425 82749552 -66033920 - MIR SINE MIR -89 173 47 4021 38 0 4 chr11 82749814 82750290 -66033182 - L1PA3 LINE L1 0 6155 5682 1653 151 61 0 chr11 82750796 82750910 -66032562 + AluJb SINE Alu 4 110 -202 441 0 0 0 chr11 82750910 82750959 -66032513 + (CAA)n Simple_repeat Simple_repeat 3 51 0 1653 151 61 0 chr11 82750959 82751122 -66032350 + AluJb SINE Alu 110 298 -14 230 169 52 52 chr11 82752092 82752169 -66031303 - MIR SINE MIR -114 94 18 2265 92 0 13 chr11 82752217 82752522 -66030950 - AluSc SINE Alu -8 301 1 3374 129 50 2 chr11 82752732 82753297 -66030175 + MER51C LTR ERV1 1 572 -68 688 130 37 0 chr11 82753297 82753405 -66030067 - AluSq/x SINE Alu -177 136 25 347 102 17 0 chr11 82753424 82753483 -66029989 + MER51C LTR ERV1 581 640 0 1465 201 64 5 chr11 82754092 82754466 -66029006 + L1ME1 LINE L1 4927 5322 -824 887 118 0 22 chr11 82754473 82754609 -66028863 + AluSq/x SINE Alu 1 133 -180 2637 238 67 38 chr11 82754612 82754866 -66028606 + L1ME1 LINE L1 5314 5559 -607 2582 106 25 5 chr11 82754866 82755234 -66028238 + THE1C LTR MaLR 1 375 0 2637 238 67 38 chr11 82755234 82755764 -66027708 + L1ME1 LINE L1 5559 6126 -40 849 131 0 31 chr11 82755764 82755894 -66027578 + FLAM_C SINE Alu 1 126 -7 2637 238 67 38 chr11 82755894 82755932 -66027540 + L1ME1 LINE L1 6126 6161 -5 233 147 206 59 chr11 82756005 82756107 -66027365 - MER112 DNA MER1_type -143 117 1 461 235 0 0 chr11 82756314 82756395 -66027077 + AluSg/x SINE Alu 205 285 -27 317 256 70 39 chr11 82756411 82756540 -66026932 + L1M4 LINE L1 4567 4699 -1447 814 189 30 12 chr11 82757134 82757303 -66026169 + L1MC4a LINE L1 6617 6788 -1020 2174 117 0 0 chr11 82757353 82757660 -66025812 + AluSx SINE Alu 1 307 -5 2359 53 3 3 chr11 82757736 82758035 -66025437 - AluY SINE Alu -12 299 1 664 258 134 23 chr11 82758035 82758423 -66025049 + L1MC4 LINE L1 7098 7528 -514 2000 126 0 0 chr11 82758430 82758732 -66024740 - AluSx SINE Alu 0 307 6 434 239 174 63 chr11 82758733 82758855 -66024617 + L1MC4 LINE L1 7596 7703 -339 1743 149 46 3 chr11 82758855 82759137 -66024335 - AluJb SINE Alu -17 295 2 434 239 174 63 chr11 82759137 82759411 -66024061 + L1MC4 LINE L1 7703 8036 -6 2304 85 0 0 chr11 82759698 82759992 -66023480 - AluSx SINE Alu -18 294 1 1884 133 19 10 chr11 82760195 82760504 -66022968 + AluJb SINE Alu 1 312 0 186 292 83 0 chr11 82761226 82761298 -66022174 - MIR SINE MIR -115 147 70 200 225 0 79 chr11 82761850 82761939 -66021533 + (CCCGG)n Simple_repeat Simple_repeat 1 82 0 327 264 28 9 chr11 82762019 82762125 -66021347 + MIR SINE MIR 24 131 -77 220 100 20 20 chr11 82763021 82763071 -66020401 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 399 320 82 43 chr11 82763335 82763638 -66019834 - L2 LINE L2 -45 3227 2913 252 265 112 10 chr11 82764358 82764456 -66019016 - L2 LINE L2 -632 2682 2575 1811 50 0 0 chr11 82764618 82764836 -66018636 - AluY SINE Alu -8 303 86 266 306 56 19 chr11 82764838 82764946 -66018526 - MIR SINE MIR -66 196 85 318 239 220 9 chr11 82765562 82765671 -66017801 - MIR3 SINE MIR -62 146 15 1713 162 6 41 chr11 82765968 82766283 -66017189 - AluJb SINE Alu -8 304 1 205 296 0 0 chr11 82766352 82766406 -66017066 + L2 LINE L2 3133 3186 -86 791 140 0 180 chr11 82766606 82766806 -66016666 - FRAM SINE Alu -12 164 1 185 241 0 89 chr11 82766809 82766888 -66016584 - MER5A DNA MER1_type -117 72 1 195 355 32 0 chr11 82767001 82767063 -66016409 - L2 LINE L2 -84 3188 3125 472 284 96 50 chr11 82767552 82767813 -66015659 - L2 LINE L2 0 3272 3000 1600 155 25 0 chr11 82768547 82768824 -66014648 - AluJo SINE Alu -22 290 7 350 177 0 0 chr11 82768901 82768963 -66014509 - MIR SINE MIR -117 145 84 28 0 0 0 chr11 82769321 82769349 -66014123 + GC_rich Low_complexity Low_complexity 1 28 0 268 232 43 0 chr11 82771090 82771166 -66012306 + MIR SINE MIR 69 148 -60 878 226 18 46 chr11 82771494 82771711 -66011761 + MIR SINE MIR 12 222 -40 638 208 48 24 chr11 82771918 82772086 -66011386 - MIR SINE MIR -48 214 43 275 171 0 43 chr11 82772622 82772692 -66010780 + MIR SINE MIR 71 137 -71 200 216 59 0 chr11 82773205 82773256 -66010216 - MIR SINE MIR -93 169 116 398 254 42 171 chr11 82773728 82774138 -66009334 + L2 LINE L2 2841 3197 -75 299 344 46 0 chr11 82774127 82774258 -66009214 - L2 LINE L2 -3 3269 3133 * 365 351 45 0 chr11 82774485 82774639 -66008833 - MIR SINE MIR -58 204 44 1539 270 75 44 chr11 82774724 82775321 -66008151 + L1MEd LINE L1 3 618 -5501 380 265 0 10 chr11 82775330 82775428 -66008044 + L1MEd LINE L1 666 762 -5357 524 267 55 12 chr11 82775462 82775627 -66007845 + L3 LINE CR1 1356 1527 -50 2670 3 0 0 chr11 82776389 82776683 -66006789 - AluYa5 SINE Alu -17 294 1 251 272 146 0 chr11 82777845 82777955 -66005517 - MIR SINE MIR -64 144 38 496 208 29 15 chr11 82779093 82779291 -66004181 - MER5C DNA MER1_type -2 322 63 1422 226 37 64 chr11 82780380 82780787 -66002685 - MSTD LTR MaLR 0 396 1 406 262 28 0 chr11 82780793 82780900 -66002572 - L2 LINE L2 -5 3308 3199 245 260 10 21 chr11 82781751 82781847 -66001625 + (TG)n Simple_repeat Simple_repeat 1 95 0 352 235 18 18 chr11 82782378 82782548 -66000924 + GA-rich Low_complexity Low_complexity 2 171 0 197 277 0 0 chr11 82783353 82783400 -66000072 - L2 LINE L2 -52 3220 3174 6356 94 28 14 chr11 82783436 82785294 -65998178 - L1PA11 LINE L1 -12 6162 4242 266 397 103 10 chr11 82786973 82787285 -65996187 - L2 LINE L2 -93 3179 2839 1695 211 31 31 chr11 82787443 82787864 -65995608 + LOR1b LTR ERV1 41 461 0 378 0 0 0 chr11 82787867 82787909 -65995563 + (TG)n Simple_repeat Simple_repeat 2 43 0 2934 241 39 15 chr11 82788139 82789149 -65994323 + L1P4 LINE L1 4480 5510 -658 214 258 0 48 chr11 82789489 82789551 -65993921 + G-rich Low_complexity Low_complexity 3 61 0 281 317 0 20 chr11 82789590 82789691 -65993781 - MER5B DNA MER1_type -79 99 1 1173 207 7 23 chr11 82789783 82790083 -65993389 + AluSq SINE Alu 7 301 -12 423 242 90 76 chr11 82790712 82790881 -65992591 - L1ME3A LINE L1 -18 6152 5978 1614 179 10 0 chr11 82790881 82791177 -65992295 - AluJb SINE Alu -11 301 3 423 242 90 76 chr11 82791177 82791230 -65992242 - L1ME3A LINE L1 -192 5978 5927 315 229 145 8 chr11 82791242 82791373 -65992099 - L1ME3A LINE L1 -223 5947 5799 242 143 143 0 chr11 82791377 82791433 -65992039 - Charlie1 DNA MER1_type -8 2753 2690 1404 184 41 33 chr11 82791537 82792024 -65991448 - L1ME3A LINE L1 -743 5403 4920 1216 147 224 8 chr11 82792090 82792335 -65991137 - AluJo SINE Alu -4 298 1 1410 147 26 55 chr11 82792370 82792643 -65990829 - L1PA11 LINE L1 0 6174 5910 191 283 0 0 chr11 82792823 82792876 -65990596 - MIR3 SINE MIR -2 206 154 1121 193 5 0 chr11 82792926 82793144 -65990328 - AluJb SINE Alu -9 303 85 32 0 0 0 chr11 82793836 82793868 -65989604 + AT_rich Low_complexity Low_complexity 1 32 0 900 132 46 13 chr11 82794000 82794152 -65989320 - THE1C LTR MaLR -218 157 1 824 251 69 4 chr11 82794154 82794401 -65989071 - L1ME LINE L1 -584 5582 5320 738 172 0 22 chr11 82794412 82794546 -65988926 - AluSq/x SINE Alu -182 131 1 782 275 70 16 chr11 82794555 82794929 -65988543 - L1ME LINE L1 -826 5320 4927 1143 199 3 21 chr11 82795255 82795542 -65987930 + AluJb SINE Alu 19 300 -12 281 181 208 0 chr11 82795584 82795656 -65987816 - MIR SINE MIR -59 203 117 260 270 180 22 chr11 82795778 82796000 -65987472 - L1ME4a LINE L1 -12 6109 5853 1049 255 29 6 chr11 82796460 82796772 -65986700 - MER51C LTR ERV1 -341 299 1 1729 150 0 13 chr11 82796989 82797289 -65986183 + AluSc SINE Alu 7 302 -7 1171 236 7 27 chr11 82798108 82798400 -65985072 - AluJo SINE Alu -14 288 3 386 251 47 65 chr11 82798669 82798884 -65984588 - MER58C DNA MER1_type -2 213 3 1503 175 45 3 chr11 82799173 82799459 -65984013 + AluJb SINE Alu 2 299 -13 1621 172 0 4 chr11 82799582 82799861 -65983611 + AluSx SINE Alu 6 283 -29 24 0 0 0 chr11 82799861 82799885 -65983587 + AT_rich Low_complexity Low_complexity 1 24 0 401 244 132 45 chr11 82799899 82800165 -65983307 - L1MC4a LINE L1 -367 7441 7153 1626 155 0 4 chr11 82802336 82802613 -65980859 + AluSg SINE Alu 1 276 -34 419 0 20 0 chr11 82802613 82802664 -65980808 + (CA)n Simple_repeat Simple_repeat 2 53 0 194 234 91 26 chr11 82802872 82802949 -65980523 + MIR SINE MIR 124 205 -57 492 295 105 56 chr11 82803886 82804191 -65979281 + LTR16C LTR ERVL 172 491 0 752 171 8 8 chr11 82804481 82804610 -65978862 + FLAM_C SINE Alu 2 130 -13 955 266 16 54 chr11 82804728 82805115 -65978357 + L1ME1 LINE L1 5761 6132 -34 581 189 0 33 chr11 82805125 82805247 -65978225 + FLAM_C SINE Alu 9 126 -17 267 184 204 51 chr11 82805362 82805460 -65978012 - MER112 DNA MER1_type -147 113 1 339 220 0 0 chr11 82805673 82805748 -65977724 + AluSg/x SINE Alu 209 267 -33 24 53 0 0 chr11 82805809 82805847 -65977625 + AT_rich Low_complexity Low_complexity 1 38 0 227 293 190 0 chr11 82806916 82807032 -65976440 - MIR SINE MIR -94 168 31 5393 150 28 13 chr11 82807626 82808585 -65974887 + L1PA11 LINE L1 5182 6153 -21 224 255 0 0 chr11 82808630 82808677 -65974795 + L2 LINE L2 3174 3220 -52 262 248 20 20 chr11 82809518 82809667 -65973805 + CT-rich Low_complexity Low_complexity 3 151 0 182 59 88 29 chr11 82810011 82810045 -65973427 - MIR SINE MIR -1 261 226 * 195 209 314 0 chr11 82810019 82810124 -65973348 - L2 LINE L2 -14 3299 3162 1490 166 0 50 chr11 82810170 82810472 -65973000 + AluSx SINE Alu 7 293 -19 1493 173 61 0 chr11 82812615 82812778 -65970694 - AluJb SINE Alu -14 298 110 441 0 0 0 chr11 82812778 82812827 -65970645 + (TTG)n Simple_repeat Simple_repeat 3 51 0 1493 173 61 0 chr11 82812827 82812941 -65970531 - AluJb SINE Alu -202 110 4 1807 113 4 4 chr11 82863060 82863308 -65920164 - AluSx SINE Alu -54 258 11 3697 155 11 25 chr11 82863318 82864217 -65919255 - L1PA16 LINE L1 -264 5902 5024 2261 108 20 0 chr11 82864217 82864523 -65918949 - AluSx SINE Alu 0 312 1 3697 155 11 25 chr11 82864523 82864797 -65918675 - L1PA16 LINE L1 -1142 5024 4747 814 189 31 0 chr11 82864900 82865059 -65918413 + MER3 DNA MER1_type 46 209 0 312 185 0 0 chr11 82865078 82865132 -65918340 + MER3 DNA MER1_type 156 209 0 264 220 0 0 chr11 82865089 82865139 -65918333 - MER3 DNA MER1_type -119 90 41 * 951 193 11 5 chr11 82865198 82865385 -65918087 - MER5A DNA MER1_type -1 188 1 205 214 71 0 chr11 82865687 82865757 -65917715 + (CATAT)n Simple_repeat Simple_repeat 1 75 0 242 344 11 22 chr11 82866440 82866530 -65916942 + MIR SINE MIR 27 115 -93 201 280 0 0 chr11 82867610 82867660 -65915812 + L2 LINE L2 3218 3267 -5 273 353 58 29 chr11 82867778 82867951 -65915521 - MIR SINE MIR -56 206 29 230 290 11 65 chr11 82868392 82868485 -65914987 - L2 LINE L2 -12 3301 3214 327 25 0 0 chr11 82868795 82868835 -65914637 + (A)n Simple_repeat Simple_repeat 1 40 0 214 311 52 52 chr11 82868843 82868978 -65914494 - L2 LINE L2 -528 2786 2652 2198 97 10 3 chr11 82869255 82869554 -65913918 - AluSp SINE Alu -12 301 1 209 162 88 73 chr11 82869693 82869761 -65913711 + MIR SINE MIR 194 262 0 273 300 90 0 chr11 82869874 82869974 -65913498 + L2 LINE L2 3160 3268 -4 267 315 45 54 chr11 82870468 82870579 -65912893 + MIR SINE MIR 35 144 -64 258 412 79 9 chr11 82870584 82870698 -65912774 - L2 LINE L2 -14 3258 3137 1173 151 0 11 chr11 82871054 82871240 -65912232 - AluJo SINE Alu -6 306 123 757 242 136 5 chr11 82872338 82872536 -65910936 - MIR SINE MIR -3 259 36 318 208 0 26 chr11 82872995 82873072 -65910400 + L2 LINE L2 2181 2255 -1059 600 266 111 59 chr11 82873137 82873317 -65910155 + L2 LINE L2 2432 2634 -680 1275 153 146 69 chr11 82873317 82873592 -65909880 + AluJb SINE Alu 1 296 -16 600 266 111 59 chr11 82873592 82873700 -65909772 + L2 LINE L2 2634 2735 -579 705 192 8 8 chr11 82873850 82873980 -65909492 + FLAM_A SINE Alu 1 130 -3 1926 111 14 30 chr11 82874016 82874313 -65909159 + AluSg SINE Alu 3 294 -16 459 221 82 8 chr11 82874313 82874435 -65909037 + L2 LINE L2 3166 3296 -17 468 304 29 14 chr11 82874721 82874928 -65908544 - L1ME LINE L1 -406 5715 5506 233 347 189 0 chr11 82875594 82875790 -65907682 + L2 LINE L2 2554 2786 -528 360 0 0 0 chr11 82875798 82875838 -65907634 + (T)n Simple_repeat Simple_repeat 1 40 0 230 268 18 0 chr11 82876185 82876241 -65907231 + L2 LINE L2 3245 3301 -12 1826 161 7 13 chr11 82877641 82877946 -65905526 - AluJo SINE Alu -9 303 1 198 301 223 28 chr11 82878071 82878390 -65905082 + L2 LINE L2 1892 2272 -1042 6550 124 27 2 chr11 82878503 82880262 -65903210 - L1MA2 LINE L1 -1 6303 4502 1266 158 90 7 chr11 82880369 82880647 -65902825 - Tigger2 DNA MER2_type -138 2580 2280 404 188 0 0 chr11 82880645 82880714 -65902758 - Tigger2 DNA MER2_type -2649 69 1 * 2634 218 93 21 chr11 82880728 82881600 -65901872 + L1ME1 LINE L1 5208 6150 -16 467 273 84 7 chr11 82881794 82881948 -65901524 - MIR SINE MIR -65 197 32 22 35 0 0 chr11 82882092 82882121 -65901351 + AT_rich Low_complexity Low_complexity 1 29 0 216 97 0 0 chr11 82882344 82882375 -65901097 + (A)n Simple_repeat Simple_repeat 1 31 0 205 149 15 134 chr11 82882571 82882638 -65900834 + L3b LINE CR1 1287 1345 -238 2046 120 3 7 chr11 82884352 82884652 -65898820 + AluSq SINE Alu 1 299 -14 464 269 57 38 chr11 82884948 82885160 -65898312 + MLT1L LTR MaLR 25 240 -375 300 277 74 7 chr11 82885166 82885314 -65898158 + MLT1L LTR MaLR 442 599 -16 671 200 0 0 chr11 82885460 82885580 -65897892 + MER5A DNA MER1_type 1 120 -69 2153 127 0 0 chr11 82885580 82885871 -65897601 + AluSx SINE Alu 1 291 -21 2130 123 0 3 chr11 82885973 82886281 -65897191 - AluSx SINE Alu -5 307 1 230 189 54 68 chr11 82886679 82886753 -65896719 + L2 LINE L2 3196 3268 -4 316 204 10 61 chr11 82886851 82886949 -65896523 - LTR33A LTR ERVL -9 514 422 364 316 78 48 chr11 82887592 82887798 -65895674 - L2 LINE L2 -4 3268 3057 1853 183 42 37 chr11 82888245 82888699 -65894773 - L1ME2 LINE L1 -10 6154 5699 518 121 121 0 chr11 82888717 82888816 -65894656 - L1MC3 LINE L1 -8 7777 7667 308 336 39 8 chr11 82889310 82889438 -65894034 - MIR SINE MIR -111 151 20 219 269 258 0 chr11 82890434 82890527 -65892945 - L2 LINE L2 -1 3271 3155 221 307 68 11 chr11 82891553 82891641 -65891831 - L3 LINE CR1 -2 1575 1483 564 284 0 0 chr11 82891728 82891855 -65891617 + MIR3 SINE MIR 30 156 -52 332 319 13 38 chr11 82891855 82892012 -65891460 - MER117 DNA MER1_type -4 193 41 671 282 19 19 chr11 82892078 82892287 -65891185 + MER63A DNA MER1_type 2 210 0 408 291 97 0 chr11 82892427 82892561 -65890911 + MIR SINE MIR 87 233 -29 840 122 22 88 chr11 82892938 82893119 -65890353 - L1 LINE L1 -1789 4357 4189 294 255 71 10 chr11 82894828 82894926 -65888546 + MLT1L LTR MaLR 177 280 -335 240 300 44 33 chr11 82895138 82895228 -65888244 - MIR SINE MIR -165 97 7 2028 149 0 10 chr11 82895487 82895783 -65887689 - AluSx SINE Alu -19 293 1 232 236 0 0 chr11 82897767 82897856 -65885616 - L2 LINE L2 0 3313 3224 191 371 42 30 chr11 82898783 82898950 -65884522 + L2 LINE L2 2925 3093 -179 2418 73 3 0 chr11 82898962 82899265 -65884207 - AluY SINE Alu -7 304 1 201 250 96 0 chr11 82899473 82899525 -65883947 - MIR SINE MIR -108 154 98 399 121 22 33 chr11 82899926 82900017 -65883455 + GA-rich Low_complexity Low_complexity 2 91 0 1313 173 65 7 chr11 82900216 82900522 -65882950 - MER33 DNA MER1_type 0 324 1 304 317 48 0 chr11 82900607 82900752 -65882720 + HAL1 LINE L1 1631 1782 -725 1595 168 14 24 chr11 82901552 82901849 -65881623 + AluJb SINE Alu 1 294 -18 22 35 0 0 chr11 82902677 82902706 -65880766 + AT_rich Low_complexity Low_complexity 1 29 0 411 298 112 25 chr11 82902968 82903129 -65880343 - MIR SINE MIR -86 176 2 225 0 0 0 chr11 82903132 82903157 -65880315 + (GAGAA)n Simple_repeat Simple_repeat 1 25 0 315 0 0 0 chr11 82903232 82903267 -65880205 + (TA)n Simple_repeat Simple_repeat 1 35 0 241 328 168 8 chr11 82903941 82904072 -65879400 + MIR SINE MIR 2 153 -109 899 172 125 4 chr11 82904149 82904381 -65879091 + L1MC4a LINE L1 4958 5217 -929 1066 160 0 17 chr11 82904805 82904980 -65878492 + FRAM SINE Alu 1 172 -4 2245 115 0 0 chr11 82905177 82905472 -65878000 + AluSx SINE Alu 12 306 -6 363 260 40 76 chr11 82905849 82906011 -65877461 + L1MEd LINE L1 3 156 -5963 2210 134 52 31 chr11 82906011 82906458 -65877014 + L1MB3 LINE L1 5728 6183 0 363 260 40 76 chr11 82906458 82906518 -65876954 + L1MEd LINE L1 156 217 -5902 6780 39 4 32 chr11 82906652 82907771 -65875701 + L1PA4 LINE L1 5104 6155 0 796 306 99 30 chr11 82907772 82908409 -65875063 + L1MEd LINE L1 447 1127 -4992 451 287 95 31 chr11 82908513 82908939 -65874533 + L1MEd LINE L1 1112 1731 -861 909 233 125 77 chr11 82909080 82909560 -65873912 + MLT1D LTR MaLR 1 503 -2 519 186 113 48 chr11 82909562 82909686 -65873786 + FLAM_C SINE Alu 1 132 -1 2054 136 0 3 chr11 82909852 82910169 -65873303 + AluSx SINE Alu 1 312 0 968 260 142 39 chr11 82910795 82911365 -65872107 + L1MC4a LINE L1 5254 5882 -1926 358 288 75 51 chr11 82911569 82911897 -65871575 + L1MEd LINE L1 1879 2169 -3960 711 282 49 24 chr11 82911911 82912336 -65871136 + L1MEd LINE L1 2126 2561 -3568 367 279 27 75 chr11 82912550 82912697 -65870775 + L2 LINE L2 3125 3264 -8 348 368 75 0 chr11 82912738 82912844 -65870628 - L2 LINE L2 -16 3256 3143 1819 189 7 3 chr11 82912858 82913160 -65870312 - AluJb SINE Alu -9 303 1 210 209 23 0 chr11 82913259 82913302 -65870170 - L2 LINE L2 -2 3311 3268 475 191 0 0 chr11 82913497 82913581 -65869891 - AluJ/FLAM SINE Alu -228 84 1 326 271 126 9 chr11 82913657 82913871 -65869601 + MER112 DNA MER1_type 18 256 -4 22 0 0 0 chr11 82914168 82914190 -65869282 + AT_rich Low_complexity Low_complexity 1 22 0 678 101 0 0 chr11 82914263 82914362 -65869110 - L1PB1 LINE L1 0 6151 6053 238 368 38 0 chr11 82914453 82914559 -65868913 - MIR SINE MIR -71 137 28 231 236 56 52 chr11 82915191 82915294 -65868178 + MIR SINE MIR 37 138 -70 2823 10 0 0 chr11 82916299 82916607 -65866865 + AluYa5 SINE Alu 1 308 -3 378 61 0 0 chr11 82917020 82917069 -65866403 + (TG)n Simple_repeat Simple_repeat 2 50 0 193 383 17 0 chr11 82917953 82918073 -65865399 + L3 LINE CR1 1108 1229 -348 541 220 0 0 chr11 82918124 82918224 -65865248 + FRAM SINE Alu 41 140 -36 198 91 0 0 chr11 82918228 82918261 -65865211 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 232 274 20 0 chr11 82919364 82919415 -65864057 - L2 LINE L2 -36 3236 3185 1748 145 3 47 chr11 82921530 82921827 -65861645 - AluJb SINE Alu -28 284 1 2153 130 3 0 chr11 82921998 82922299 -65861173 - AluSp SINE Alu -11 302 1 720 43 0 0 chr11 82922829 82922921 -65860551 + AluYa5/8 SINE Alu 218 309 -2 340 276 77 51 chr11 82923106 82923262 -65860210 - L2 LINE L2 -177 3095 2936 284 270 115 7 chr11 82923455 82923603 -65859869 - MER103 DNA DNA -1 165 2 297 316 41 10 chr11 82923797 82923895 -65859577 + MIR SINE MIR 32 132 -76 517 264 88 0 chr11 82923936 82924084 -65859388 - MIR SINE MIR -43 219 59 2895 118 32 26 chr11 82924176 82924640 -65858832 - LTR24 LTR ERV1 0 467 1 2273 65 11 4 chr11 82924802 82925078 -65858394 + AluSc SINE Alu 16 293 -16 1529 265 98 14 chr11 82925137 82925700 -65857772 - HsTC2a DNA Tc2 -134 610 1 275 250 146 40 chr11 82926214 82926414 -65857058 + MLT1K LTR MaLR 1 236 -352 578 216 40 8 chr11 82926505 82926630 -65856842 + FLAM_A SINE Alu 4 132 -1 184 240 20 90 chr11 82926722 82926822 -65856650 + MIR SINE MIR 143 235 -27 229 274 168 0 chr11 82927557 82927652 -65855820 - MIR SINE MIR -70 192 82 861 164 19 67 chr11 82927764 82927972 -65855500 + MLT1A1 LTR MaLR 1 198 -167 500 302 94 25 chr11 82928385 82928620 -65854852 + MIR SINE MIR 12 262 0 378 335 66 54 chr11 82928733 82928975 -65854497 - L2 LINE L2 -465 2849 2605 * 448 264 22 108 chr11 82928970 82929160 -65854312 + MIR SINE MIR 18 182 -80 264 30 0 0 chr11 82929160 82929193 -65854279 + (TG)n Simple_repeat Simple_repeat 2 34 0 448 264 22 108 chr11 82929193 82929266 -65854206 + MIR SINE MIR 182 260 -2 764 314 20 51 chr11 82929482 82929832 -65853640 - LTR16A LTR ERVL -8 442 104 395 225 29 104 chr11 82929982 82930155 -65853317 + MER20 DNA MER1_type 57 216 -3 1008 178 231 12 chr11 82930517 82930764 -65852708 - AluY SINE Alu 0 301 1 486 189 17 120 chr11 82931126 82931247 -65852225 - L1ME LINE L1 -394 6032 5933 1639 158 62 11 chr11 82931247 82931520 -65851952 - AluJo SINE Alu -17 295 9 486 189 17 120 chr11 82931520 82931573 -65851899 - L1ME LINE L1 -493 5933 5876 230 140 200 0 chr11 82931585 82931635 -65851837 - L1 LINE L1 -1675 4731 4672 308 208 0 148 chr11 82931637 82931738 -65851734 + MER2 DNA MER2_type 2 87 -258 1405 210 60 48 chr11 82931772 82932539 -65850933 - L1ME LINE L1 -664 5838 5065 2417 242 66 67 chr11 82932550 82932647 -65850825 - L1MDb LINE L1 -4246 2160 2064 1858 185 80 75 chr11 82932647 82933150 -65850322 - MLT1D LTR MaLR 0 505 1 2417 242 66 67 chr11 82933150 82933914 -65849558 - L1MDb LINE L1 -4342 2064 1343 2247 129 0 0 chr11 82933914 82934225 -65849247 - AluSx SINE Alu -1 311 1 2417 242 66 67 chr11 82934225 82934793 -65848679 - L1MDb LINE L1 -5063 1343 776 23 0 0 0 chr11 82935101 82935124 -65848348 + AT_rich Low_complexity Low_complexity 1 23 0 2362 80 0 3 chr11 82935124 82935413 -65848059 + AluSx SINE Alu 1 288 -24 6698 70 11 0 chr11 82935883 82937480 -65845992 - L1PA8 LINE L1 0 6172 4568 2315 66 0 7 chr11 82937580 82937867 -65845605 - AluY SINE Alu -26 285 1 22 0 0 0 chr11 82937908 82937930 -65845542 + AT_rich Low_complexity Low_complexity 1 22 0 473 270 144 35 chr11 82938020 82938083 -65845389 - MLT1I LTR MaLR 0 409 354 912 199 27 54 chr11 82938083 82938304 -65845168 - MER20 DNA MER1_type -3 216 2 473 270 144 35 chr11 82938304 82938562 -65844910 - MLT1I LTR MaLR -55 354 64 2225 108 3 22 chr11 82939097 82939411 -65844061 - AluSx SINE Alu -4 308 1 2207 92 3 31 chr11 82940520 82940837 -65842635 - AluSc SINE Alu -1 308 1 1733 193 0 3 chr11 82940839 82941139 -65842333 - AluJb SINE Alu -13 299 1 1907 181 29 34 chr11 82942673 82943055 -65840417 + MSTB LTR MaLR 1 382 -44 2189 103 10 3 chr11 82943055 82943347 -65840125 - AluSg SINE Alu -16 294 1 1907 181 29 34 chr11 82943347 82943373 -65840099 + MSTB LTR MaLR 382 407 -19 637 231 45 5 chr11 82943819 82944018 -65839454 - L1ME3A LINE L1 -14 6156 5950 272 250 0 17 chr11 82944058 82944118 -65839354 - MIR SINE MIR -133 75 17 224 344 0 32 chr11 82944199 82944292 -65839180 + MIR SINE MIR 60 149 -113 481 274 40 39 chr11 82945405 82945568 -65837904 - MIR3 SINE MIR -9 199 35 390 21 0 0 chr11 82946228 82946275 -65837197 + (CA)n Simple_repeat Simple_repeat 2 48 0 1851 171 71 8 chr11 82946308 82946701 -65836771 + L1MA5 LINE L1 5883 6300 0 531 322 62 29 chr11 82946747 82946989 -65836483 - MIR SINE MIR -11 251 2 214 354 85 0 chr11 82947103 82947185 -65836287 - L2 LINE L2 0 3272 3184 1560 111 48 159 chr11 82947188 82947340 -65836132 + THE1A LTR MaLR 1 168 -187 1969 110 15 0 chr11 82947340 82947640 -65835832 - AluSx SINE Alu 0 309 6 1560 111 48 159 chr11 82947640 82947681 -65835791 + THE1A LTR MaLR 168 212 -143 182 62 31 0 chr11 82947681 82947713 -65835759 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 2293 84 3 0 chr11 82947716 82948000 -65835472 - AluSp SINE Alu -28 285 1 1560 111 48 159 chr11 82948000 82948195 -65835277 + THE1A LTR MaLR 214 351 -4 1980 340 88 17 chr11 82948364 82948702 -65834770 - L2 LINE L2 -246 3067 2754 756 178 0 22 chr11 82948702 82948837 -65834635 - FLAM_C SINE Alu -1 132 1 1980 340 88 17 chr11 82948837 82949223 -65834249 - L2 LINE L2 -559 2754 2397 1900 133 11 58 chr11 82949223 82949583 -65833889 - MER2 DNA MER2_type -1 343 1 1980 340 88 17 chr11 82949583 82950020 -65833452 - L2 LINE L2 -916 2397 1820 252 0 0 0 chr11 82950033 82950061 -65833411 + (A)n Simple_repeat Simple_repeat 1 28 0 1774 146 10 36 chr11 82950111 82950412 -65833060 + AluSx SINE Alu 17 309 -3 277 319 101 17 chr11 82950998 82951117 -65832355 + MIR SINE MIR 18 146 -116 22 99 0 0 chr11 82951411 82951482 -65831990 + AT_rich Low_complexity Low_complexity 1 71 0 1534 209 17 3 chr11 82951503 82951790 -65831682 - AluJo SINE Alu -21 291 1 2200 111 0 57 chr11 82951834 82952166 -65831306 + AluSq SINE Alu 1 313 0 4854 94 124 124 chr11 82952385 82953904 -65829568 - pTR5 LTR ERV1 0 2438 738 309 89 0 0 chr11 82954026 82954071 -65829401 + (CAAAA)n Simple_repeat Simple_repeat 5 49 0 2122 102 0 7 chr11 82954917 82955201 -65828271 - AluSg SINE Alu -17 293 12 293 311 98 30 chr11 82955291 82955423 -65828049 - L2 LINE L2 -4 3268 3128 1560 178 40 10 chr11 82955698 82956001 -65827471 + AluJb SINE Alu 1 312 0 26 30 0 0 chr11 82956001 82956034 -65827438 + AT_rich Low_complexity Low_complexity 1 33 0 591 206 15 0 chr11 82956047 82956178 -65827294 + L1MA9 LINE L1 5949 6081 -231 457 191 0 11 chr11 82956182 82956276 -65827196 + L1MA9 LINE L1 6182 6274 -38 762 241 25 0 chr11 82956277 82956439 -65827033 - AluJo SINE Alu -10 302 137 563 225 8 8 chr11 82956498 82956618 -65826854 + FLAM_A SINE Alu 1 120 -13 267 103 0 0 chr11 82956742 82956781 -65826691 + (A)n Simple_repeat Simple_repeat 1 39 0 2314 79 14 0 chr11 82956843 82957135 -65826337 - AluY SINE Alu -15 296 1 842 154 0 22 chr11 82957227 82957363 -65826109 - AluJo SINE Alu -169 133 1 22 35 0 0 chr11 82957464 82957493 -65825979 + AT_rich Low_complexity Low_complexity 1 29 0 1119 288 64 59 chr11 82958073 82958622 -65824850 - L2 LINE L2 0 3313 2763 331 252 164 28 chr11 82958923 82959268 -65824204 - L1MC4a LINE L1 -313 5808 5518 198 0 0 0 chr11 82959314 82959336 -65824136 + (T)n Simple_repeat Simple_repeat 1 22 0 322 280 119 8 chr11 82959627 82959745 -65823727 - MIR SINE MIR -120 142 12 206 300 0 67 chr11 82959917 82959967 -65823505 + MIR3 SINE MIR 123 166 -42 3319 16 0 0 chr11 82959967 82960347 -65823125 - L1PA2 LINE L1 0 6155 5776 206 300 0 67 chr11 82960347 82960386 -65823086 + MIR3 SINE MIR 166 206 -2 1064 131 0 12 chr11 82961452 82961612 -65821860 + FRAM SINE Alu 1 157 -19 1371 265 50 105 chr11 82961795 82962615 -65820857 - L1MEd LINE L1 -5328 791 17 275 188 200 0 chr11 82962623 82962703 -65820769 - MIR SINE MIR -63 199 104 285 329 58 13 chr11 82962734 82962889 -65820583 + L2 LINE L2 3150 3311 -2 276 333 49 12 chr11 82962887 82962968 -65820504 - MIR SINE MIR -103 105 22 * 353 333 48 0 chr11 82963070 82963175 -65820297 - L2 LINE L2 -1 3271 3162 4942 142 38 30 chr11 82963229 82964014 -65819458 - L1MA7 LINE L1 -4 6287 5487 1989 149 0 25 chr11 82964014 82964329 -65819143 - AluJo SINE Alu 0 312 6 4942 142 38 30 chr11 82964329 82964840 -65818632 - L1MA7 LINE L1 -804 5487 4981 201 382 22 0 chr11 82964840 82964929 -65818543 + L3 LINE CR1 1392 1482 -95 224 235 22 44 chr11 82965522 82965555 -65817917 + (TAAA)n Simple_repeat Simple_repeat 2 34 -100 1494 207 3 37 chr11 82965555 82965854 -65817618 - AluJo SINE Alu -23 289 1 224 235 22 44 chr11 82965854 82965876 -65817596 + (TAAA)n Simple_repeat Simple_repeat 34 55 -79 2085 124 0 29 chr11 82965876 82966183 -65817289 - AluSx SINE Alu -14 298 1 224 235 22 44 chr11 82966183 82966262 -65817210 + (TAAA)n Simple_repeat Simple_repeat 55 134 0 329 222 111 28 chr11 82966312 82966456 -65817016 - L1ME4a LINE L1 -4 6117 5962 587 224 58 6 chr11 82966498 82966672 -65816800 - L1ME4a LINE L1 -390 5731 5549 2026 140 3 13 chr11 82966780 82967088 -65816384 - AluSx SINE Alu -7 305 1 493 254 202 41 chr11 82967205 82967567 -65815905 + L1ME4a LINE L1 5698 6117 -4 2528 51 0 13 chr11 82968167 82968478 -65814994 - AluY SINE Alu -4 307 1 858 260 131 67 chr11 82969866 82970106 -65813366 + L2 LINE L2 2325 2599 -715 1739 166 34 91 chr11 82970106 82970545 -65812927 + MLT2D LTR ERVL 1 414 0 858 260 131 67 chr11 82970545 82970677 -65812795 + L2 LINE L2 2599 2721 -593 184 109 22 22 chr11 82970851 82970897 -65812575 + (TA)n Simple_repeat Simple_repeat 1 46 0 26 0 0 0 chr11 82970913 82970939 -65812533 + AT_rich Low_complexity Low_complexity 1 26 0 27 49 0 0 chr11 82971053 82971094 -65812378 + AT_rich Low_complexity Low_complexity 1 41 0 454 322 13 0 chr11 82971523 82971675 -65811797 + MIR SINE MIR 108 261 -1 1415 145 0 26 chr11 82971856 82972084 -65811388 + AluJb SINE Alu 79 300 -12 1863 169 0 3 chr11 82972460 82972756 -65810716 - AluJo SINE Alu -17 295 1 1832 154 38 0 chr11 82972818 82973111 -65810361 - AluSx SINE Alu -8 304 1 2040 149 0 7 chr11 82973375 82973677 -65809795 - AluSx SINE Alu -12 300 1 258 257 43 0 chr11 82974636 82974706 -65808766 + MER94 DNA DNA 5 77 -57 10043 80 7 1 chr11 82974788 82976257 -65807215 + L1P LINE L1 2974 4451 -1695 582 271 23 59 chr11 82976867 82976936 -65806536 - MIR SINE MIR 0 262 192 2393 84 0 0 chr11 82976936 82977232 -65806240 + AluSq SINE Alu 1 296 -17 582 271 23 59 chr11 82977232 82977383 -65806089 - MIR SINE MIR -70 192 50 2250 100 3 0 chr11 82977405 82977696 -65805776 + AluSx SINE Alu 1 292 -20 22 56 0 0 chr11 82977909 82977945 -65805527 + AT_rich Low_complexity Low_complexity 1 36 0 481 280 140 0 chr11 82978136 82978286 -65805186 + MIR SINE MIR 86 256 -6 2176 107 0 3 chr11 82978434 82978724 -65804748 + AluSq SINE Alu 5 293 -20 365 94 0 0 chr11 82978735 82978788 -65804684 + Alu SINE Alu 241 293 -7 2208 123 0 0 chr11 82979765 82980075 -65803397 - AluSg SINE Alu 0 310 1 200 288 68 0 chr11 82980433 82980492 -65802980 - L2 LINE L2 -61 3211 3149 2255 101 3 0 chr11 82981950 82982256 -65801216 + AluSx SINE Alu 1 307 -5 463 296 142 60 chr11 82982702 82982935 -65800537 - L3 LINE CR1 -5 1572 1321 468 305 187 8 chr11 82983016 82983278 -65800194 - L2 LINE L2 0 3313 3005 384 343 35 27 chr11 82983493 82983695 -65799777 + MIR3 SINE MIR 1 204 -4 231 286 32 0 chr11 82983953 82984016 -65799456 - Tigger8 DNA MER2_type -255 411 347 530 288 18 6 chr11 82984066 82984229 -65799243 - Tigger8 DNA MER2_type -463 203 39 2180 120 3 3 chr11 82985111 82985419 -65798053 + AluSx SINE Alu 1 308 -4 1846 81 0 67 chr11 82985958 82986241 -65797231 + AluY SINE Alu 38 301 -10 1991 145 0 0 chr11 82987008 82987322 -65796150 - AluJb SINE Alu 0 314 1 1549 184 62 0 chr11 82987325 82987597 -65795875 - AluJb SINE Alu -23 289 1 276 250 29 0 chr11 82987606 82987674 -65795798 - L3 LINE CR1 -166 1411 1342 396 244 112 2 chr11 82988266 82988415 -65795057 + MIR SINE MIR 20 180 -62 354 331 26 0 chr11 82988940 82989058 -65794414 - MIR SINE MIR -31 177 48 429 332 158 0 chr11 82989082 82989272 -65794200 + MIR SINE MIR 27 246 -16 1562 163 60 14 chr11 82989307 82989589 -65793883 - AluSx SINE Alu -17 295 1 1897 149 3 7 chr11 82989598 82989887 -65793585 - AluJo SINE Alu -23 289 2 2290 93 10 3 chr11 82990566 82990867 -65792605 - AluSp SINE Alu -10 303 1 764 134 60 7 chr11 82990869 82991018 -65792454 + L1MB7 LINE L1 6028 6184 0 1358 167 0 14 chr11 82991600 82991822 -65791650 + AluSq SINE Alu 37 255 -58 312 330 0 11 chr11 82992110 82992198 -65791274 - L2 LINE L2 -17 3296 3210 1226 176 18 9 chr11 82992355 82992582 -65790890 + AluJb SINE Alu 83 311 -1 2279 229 30 13 chr11 82992582 82993118 -65790354 + MLT1G LTR MaLR 12 556 -34 2232 118 7 3 chr11 82993221 82993526 -65789946 + AluSg SINE Alu 3 308 -2 348 238 217 30 chr11 82994669 82994904 -65788568 + L1ME LINE L1 5379 5657 -464 2260 117 0 0 chr11 82995267 82995576 -65787896 + AluY SINE Alu 1 309 -2 1992 135 7 0 chr11 82996432 82996721 -65786751 + AluSx SINE Alu 1 291 -21 427 313 23 0 chr11 82997011 82997139 -65786333 - MIR SINE MIR -112 150 20 22 0 0 0 chr11 82997725 82997747 -65785725 + AT_rich Low_complexity Low_complexity 1 22 0 2050 122 37 0 chr11 82997863 82998157 -65785315 - AluSp SINE Alu -8 305 1 680 170 27 0 chr11 82999169 82999281 -65784191 + FAM SINE Alu 2 116 -69 189 0 0 0 chr11 82999282 82999303 -65784169 + (CA)n Simple_repeat Simple_repeat 2 22 0 300 199 223 42 chr11 82999681 82999847 -65783625 + L1MC5 LINE L1 7731 7926 -35 1398 188 24 93 chr11 82999967 83000376 -65783096 + L1MC5 LINE L1 6669 7049 -912 2039 146 10 7 chr11 83001881 83002189 -65781283 + AluSx SINE Alu 1 309 -3 2299 126 16 18 chr11 83002386 83002767 -65780705 - L1MB3 LINE L1 -7 6176 5797 378 0 0 0 chr11 83002767 83002809 -65780663 + (TG)n Simple_repeat Simple_repeat 2 43 0 573 156 0 55 chr11 83002809 83002918 -65780554 - L1MB3 LINE L1 -294 5889 5787 240 180 0 49 chr11 83002921 83002982 -65780490 + (TATATG)n Simple_repeat Simple_repeat 1 58 0 362 175 0 0 chr11 83002985 83003048 -65780424 - L1P5 LINE L1 -361 5790 5728 2051 92 16 82 chr11 83003695 83004012 -65779460 - AluSq SINE Alu -17 296 1 1805 163 23 35 chr11 83004114 83004458 -65779014 + MLT1A1 LTR MaLR 26 365 0 2323 184 2 0 chr11 83004716 83005141 -65778331 + L1MA4 LINE L1 4858 5283 -863 4046 160 52 36 chr11 83005200 83005522 -65777950 + L1MA4 LINE L1 5476 5791 -509 1681 178 14 14 chr11 83005522 83005809 -65777663 + AluJb SINE Alu 1 287 -25 4046 160 52 36 chr11 83005809 83006298 -65777174 + L1MA4 LINE L1 5791 6300 0 2504 78 0 3 chr11 83006353 83006660 -65776812 - AluY SINE Alu -5 306 1 289 222 162 8 chr11 83006660 83006777 -65776695 + MIR SINE MIR 20 154 -108 3458 215 54 21 chr11 83006858 83007643 -65775829 + L1MD1 LINE L1 31 789 -5751 1995 144 0 0 chr11 83007643 83007927 -65775545 - AluSx SINE Alu -16 296 13 3458 215 54 21 chr11 83007927 83008604 -65774868 + L1MD1 LINE L1 789 1755 -4785 2186 123 0 7 chr11 83008610 83009030 -65774442 + AluSq SINE Alu 1 418 0 3630 203 130 50 chr11 83009030 83009872 -65773600 + L1MD1 LINE L1 1711 2484 -4056 2434 121 111 8 chr11 83009872 83010260 -65773212 + MSTA LTR MaLR 1 428 0 3630 203 130 50 chr11 83010260 83010564 -65772908 + L1MD1 LINE L1 2484 2762 -3778 2310 104 3 3 chr11 83010564 83010872 -65772600 + AluSp SINE Alu 1 308 -5 3630 203 130 50 chr11 83010872 83011483 -65771989 + L1MD1 LINE L1 2762 3322 -3218 2083 151 0 0 chr11 83011483 83011782 -65771690 + AluSx SINE Alu 1 299 -13 3630 203 130 50 chr11 83011782 83012128 -65771344 + L1MD1 LINE L1 3322 3996 -2544 1534 203 4 14 chr11 83012128 83012409 -65771063 + AluJo SINE Alu 1 278 -34 1509 245 72 21 chr11 83012475 83013001 -65770471 + L1MD1 LINE L1 4890 5442 -1098 2245 79 4 4 chr11 83013012 83013290 -65770182 + AluSc SINE Alu 1 278 -31 261 0 0 0 chr11 83013293 83013322 -65770150 + (CAA)n Simple_repeat Simple_repeat 2 30 0 599 79 180 0 chr11 83013323 83013412 -65770060 + AluSp/q SINE Alu 191 295 -18 650 112 5 0 chr11 83013418 83013534 -65769938 + L1MD1 LINE L1 5710 5828 -740 2247 170 56 13 chr11 83013534 83013997 -65769475 + L1MD1 LINE L1 6148 6631 -5 213 195 0 0 chr11 83014094 83014135 -65769337 + MIR SINE MIR 210 250 -12 1002 331 102 13 chr11 83014153 83014860 -65768612 - L2 LINE L2 -733 2581 1812 216 309 83 79 chr11 83014910 83015063 -65768409 - L2 LINE L2 -1668 1646 1490 2255 109 6 13 chr11 83015063 83015376 -65768096 + AluSq SINE Alu 1 311 -2 216 309 83 79 chr11 83015376 83015500 -65767972 - L2 LINE L2 -1824 1490 1368 195 250 54 65 chr11 83015513 83015605 -65767867 + L2 LINE L2 3222 3312 -1 2146 124 0 3 chr11 83016133 83016431 -65767041 - AluSx SINE Alu -13 299 3 22 0 0 0 chr11 83017298 83017320 -65766152 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 83018039 83018060 -65765412 + AT_rich Low_complexity Low_complexity 1 21 0 39 102 0 0 chr11 83018869 83019006 -65764466 + GC_rich Low_complexity Low_complexity 1 137 0 42 82 0 0 chr11 83019184 83019282 -65764190 + GC_rich Low_complexity Low_complexity 1 98 0 22 80 0 0 chr11 83019346 83019396 -65764076 + GC_rich Low_complexity Low_complexity 1 50 0 2359 56 0 14 chr11 83021264 83021551 -65761921 - AluY SINE Alu -15 296 14 2330 116 0 0 chr11 83022783 83023094 -65760378 + AluSq SINE Alu 1 311 -2 307 271 15 113 chr11 83023491 83023538 -65759934 + L2 LINE L2 3152 3202 -70 832 161 0 0 chr11 83023538 83023662 -65759810 - FLAM_C SINE Alu -9 124 1 307 271 15 113 chr11 83023662 83023747 -65759725 + L2 LINE L2 3202 3271 -1 639 143 22 110 chr11 83023867 83024049 -65759423 - L1MA8 LINE L1 -1 6290 6125 2659 65 17 3 chr11 83024148 83024501 -65758971 + L1PA10 LINE L1 5811 6168 0 207 0 0 0 chr11 83024545 83024568 -65758904 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1514 198 45 15 chr11 83025039 83025372 -65758100 + MER63B DNA MER1_type 1 343 -93 1600 160 36 2 chr11 83025372 83025987 -65757485 - L1MB7 LINE L1 -21 6163 5491 258 253 22 22 chr11 83025995 83026086 -65757386 + MER63B DNA MER1_type 322 412 -24 342 214 60 0 chr11 83028501 83028585 -65754887 - L2 LINE L2 0 3272 3184 357 283 38 0 chr11 83028913 83029019 -65754453 - L2 LINE L2 -25 3288 3179 3312 268 24 30 chr11 83079806 83081200 -65702272 - L1M1 LINE L1 -5319 2246 175 954 211 5 0 chr11 83081217 83081407 -65702065 - AluJb SINE Alu -2 310 120 20249 22 2 0 chr11 83081535 83083901 -65699571 - L1P LINE L1 -1528 4618 2247 785 164 8 0 chr11 83084036 83084170 -65699302 - FLAM_C SINE Alu -4 139 5 720 200 0 69 chr11 83084171 83084346 -65699126 - L1M1 LINE L1 -7387 178 16 906 186 50 27 chr11 83084385 83084605 -65698867 - L1M4 LINE L1 -1219 5321 5097 284 233 48 39 chr11 83084587 83084690 -65698782 + L1MB8 LINE L1 6074 6177 -1 * 226 135 39 19 chr11 83084687 83084739 -65698733 - L1M4 LINE L1 -1413 5127 5075 * 3364 232 90 82 chr11 83084764 83086030 -65697442 + L1 LINE L1 1 1276 -5933 300 216 68 45 chr11 83086557 83086590 -65696882 + L1MC4 LINE L1 6447 6478 -1564 4431 154 61 11 chr11 83086590 83087413 -65696059 + MER6 DNA MER2_type 1 864 -1 300 216 68 45 chr11 83087413 83087467 -65696005 + L1MC4 LINE L1 6478 6536 -1506 1284 114 64 21 chr11 83087467 83087703 -65695769 + Tigger2 DNA MER2_type 2 247 -2471 581 185 0 0 chr11 83087803 83087895 -65695577 - AluJ/FLAM SINE Alu -219 93 2 2152 184 11 22 chr11 83087896 83088341 -65695131 + L1 LINE L1 4686 5125 -2083 9526 121 59 53 chr11 83088341 83090027 -65693445 + pTR5 LTR ERV1 743 2438 0 3192 178 44 1 chr11 83090030 83090692 -65692780 + L1 LINE L1 5122 5811 -1397 987 142 7 0 chr11 83090694 83090842 -65692630 + FRAM SINE Alu 26 174 -2 819 207 106 42 chr11 83090902 83091327 -65692145 - L1MDa LINE L1 -2652 3888 3437 * 2898 249 91 18 chr11 83091317 83091791 -65691681 - L1MDa LINE L1 -3348 3192 2754 2229 125 0 0 chr11 83091791 83092096 -65691376 - AluSg SINE Alu -5 305 1 2898 249 91 18 chr11 83092096 83093505 -65689967 - L1MDa LINE L1 -3786 2754 1132 180 0 0 0 chr11 83093579 83093599 -65689873 + (T)n Simple_repeat Simple_repeat 1 20 0 613 248 66 12 chr11 83094547 83094789 -65688683 + L1MC5 LINE L1 7276 7530 -431 222 196 109 33 chr11 83094791 83094883 -65688589 + MIR SINE MIR 136 234 -28 509 298 98 9 chr11 83095645 83095870 -65687602 + MIR SINE MIR 12 256 -6 912 173 54 0 chr11 83097206 83097374 -65686098 - MER45A DNA AcHobo 0 178 2 261 204 78 48 chr11 83097593 83097696 -65685776 + MIR SINE MIR 106 211 -51 260 283 174 22 chr11 83097968 83098060 -65685412 - L2 LINE L2 -2 3270 3165 825 320 38 15 chr11 83098236 83098636 -65684836 + LTR16C LTR ERVL 72 480 -11 209 229 21 0 chr11 83100033 83100081 -65683391 + (TTCA)n Simple_repeat Simple_repeat 4 52 0 491 258 72 0 chr11 83101577 83101744 -65681728 - L1MB7 LINE L1 -238 5883 5705 1560 189 39 16 chr11 83101758 83102064 -65681408 + L1MB7 LINE L1 5862 6174 -10 285 214 31 113 chr11 83102025 83102153 -65681319 - L1ME4a LINE L1 -390 5731 5617 * 1684 164 3 20 chr11 83102153 83102457 -65681015 - AluJo SINE Alu -12 300 2 285 214 31 113 chr11 83102457 83102487 -65680985 - L1ME4a LINE L1 -504 5617 5586 21 57 0 0 chr11 83102558 83102593 -65680879 + AT_rich Low_complexity Low_complexity 1 35 0 18185 17 2 1 chr11 83102676 83105555 -65677917 - L1HS LINE L1 0 6155 3273 1879 124 3 36 chr11 83107920 83108089 -65675383 - AluSx SINE Alu -16 296 140 2142 109 3 0 chr11 83108089 83108391 -65675081 - AluSp SINE Alu -10 303 1 1879 124 3 36 chr11 83108391 83108527 -65674945 - AluSx SINE Alu -172 140 1 375 226 98 10 chr11 83112552 83112654 -65670818 - L2 LINE L2 -1 3312 3202 278 361 41 0 chr11 83112861 83112931 -65670541 + L2 LINE L2 3153 3226 -46 669 264 140 17 chr11 83112931 83113166 -65670306 + MIR SINE MIR 1 258 -4 287 330 96 0 chr11 83113672 83113787 -65669685 - MIR SINE MIR -58 150 25 326 322 167 11 chr11 83114208 83114382 -65669090 - L2 LINE L2 -5 3267 3067 454 296 91 16 chr11 83114404 83114647 -65668825 - L2 LINE L2 -500 2814 2554 529 255 54 0 chr11 83115512 83115661 -65667811 + MER103 DNA DNA 1 157 -9 474 191 22 0 chr11 83115941 83116030 -65667442 - MIR3 SINE MIR -26 182 92 256 173 19 19 chr11 83116073 83116125 -65667347 - L2 LINE L2 0 3313 3262 777 261 46 29 chr11 83116482 83116720 -65666752 - MIR SINE MIR 0 262 21 212 343 15 0 chr11 83116830 83116897 -65666575 + MIR SINE MIR 195 262 0 1196 190 23 0 chr11 83116923 83117139 -65666333 + MER58A DNA MER1_type 1 221 -3 405 310 95 0 chr11 83117337 83117453 -65666019 - MIR SINE MIR -117 145 19 208 366 154 16 chr11 83118678 83118801 -65664671 + L2 LINE L2 3115 3254 -18 552 303 33 9 chr11 83119285 83119496 -65663976 + MIR SINE MIR 18 233 -29 391 305 105 42 chr11 83119964 83120154 -65663318 + L3 LINE CR1 1366 1567 -10 445 319 17 0 chr11 83120283 83120402 -65663070 + MIR SINE MIR 33 153 -55 524 323 56 6 chr11 83122078 83122239 -65661233 - L2 LINE L2 0 3272 3104 226 306 8 48 chr11 83122711 83122835 -65660637 - L2 LINE L2 -1 3271 3153 366 273 7 87 chr11 83123040 83123190 -65660282 - MIR3 SINE MIR -16 192 55 232 252 76 76 chr11 83123375 83123494 -65659978 - MIR SINE MIR -78 184 66 1671 134 8 4 chr11 83123733 83123995 -65659477 + AluSx SINE Alu 35 297 -15 196 258 151 11 chr11 83124295 83124388 -65659084 - MIR SINE MIR -59 203 98 * 283 231 77 13 chr11 83124386 83124464 -65659008 + MIR SINE MIR 133 215 -47 550 304 0 0 chr11 83124466 83124591 -65658881 + MIR SINE MIR 2 126 -136 29 47 0 0 chr11 83124651 83124694 -65658778 + AT_rich Low_complexity Low_complexity 1 43 0 570 281 112 6 chr11 83124869 83125047 -65658425 - MIR SINE MIR -12 250 54 400 331 105 40 chr11 83125780 83126028 -65657444 + L2 LINE L2 2993 3256 -16 380 230 120 10 chr11 83126182 83126282 -65657190 - L2 LINE L2 0 3272 3162 360 263 42 21 chr11 83126389 83126484 -65656988 + MIR3 SINE MIR 60 156 -52 221 346 58 13 chr11 83126902 83127058 -65656414 - MIR3 SINE MIR -37 171 9 557 283 35 7 chr11 83128434 83128579 -65654893 - MIR SINE MIR -3 259 111 993 293 89 51 chr11 83128840 83129163 -65654309 + L1MEd LINE L1 289 598 -5521 2438 68 0 0 chr11 83129163 83129474 -65653998 + AluY SINE Alu 1 311 0 993 293 89 51 chr11 83129474 83130045 -65653427 + L1MEd LINE L1 598 1217 -4902 507 247 14 41 chr11 83130254 83130400 -65653072 - MIR SINE MIR -110 152 11 597 277 114 5 chr11 83130819 83131003 -65652469 + MIR SINE MIR 48 251 -11 841 220 40 52 chr11 83131666 83131916 -65651556 - MIR SINE MIR -5 257 11 256 242 69 72 chr11 83132147 83132282 -65651190 - MIR SINE MIR -58 150 30 323 233 2 0 chr11 83132468 83132541 -65650931 - MIR SINE MIR -90 118 44 472 318 108 41 chr11 83132985 83133347 -65650125 + L2 LINE L2 2479 2864 -450 275 277 168 25 chr11 83133472 83133591 -65649881 + L2 LINE L2 3136 3271 -1 323 291 157 38 chr11 83134354 83134673 -65648799 - L2 LINE L2 -2 3270 2914 1813 153 0 13 chr11 83135233 83135534 -65647938 + AluJb SINE Alu 1 297 -15 372 202 3 13 chr11 83135853 83135952 -65647520 - MIR SINE MIR -51 157 58 232 330 32 21 chr11 83136435 83136529 -65646943 + MIR SINE MIR 13 107 -155 255 297 66 0 chr11 83136696 83136787 -65646685 - MIR3 SINE MIR -45 163 67 545 272 85 29 chr11 83137287 83137514 -65645958 + MIR SINE MIR 20 261 -1 432 317 22 70 chr11 83137521 83137792 -65645680 + MIR SINE MIR 4 261 -1 304 269 26 0 chr11 83138471 83138549 -65644923 + L2 LINE L2 3185 3264 -8 1751 158 0 3 chr11 83139521 83139805 -65643667 + AluSx SINE Alu 3 285 -27 339 44 0 0 chr11 83139805 83139850 -65643622 + (CA)n Simple_repeat Simple_repeat 2 46 0 672 235 37 90 chr11 83140301 83140569 -65642903 - MER112 DNA MER1_type -1 259 6 319 305 110 25 chr11 83141769 83141887 -65641585 + MIR SINE MIR 119 246 -16 652 249 35 48 chr11 83141889 83142118 -65641354 - MIR SINE MIR -21 241 16 783 250 123 9 chr11 83142266 83142494 -65640978 + MIR SINE MIR 2 255 -7 974 120 0 0 chr11 83144602 83144744 -65638728 + AluSg/x SINE Alu 156 297 -15 990 246 49 101 chr11 83144933 83145170 -65638302 + Charlie7 DNA MER1_type 30 278 -2334 2088 121 0 9 chr11 83145170 83145485 -65637987 + AluSx SINE Alu 1 312 0 990 246 49 101 chr11 83145485 83145844 -65637628 + Charlie7 DNA MER1_type 278 595 -2017 340 250 11 0 chr11 83145960 83146048 -65637424 + Charlie7 DNA MER1_type 2508 2596 -16 184 243 0 0 chr11 83146155 83146192 -65637280 - MIR SINE MIR -95 113 77 305 333 65 0 chr11 83146201 83146339 -65637133 + MIR3 SINE MIR 52 198 -10 249 381 0 0 chr11 83147339 83147423 -65636049 - L2 LINE L2 -48 3265 3182 433 270 103 16 chr11 83147706 83147832 -65635640 - MIR3 SINE MIR -61 147 11 282 219 47 16 chr11 83148251 83148315 -65635157 + L2 LINE L2 3248 3313 0 303 265 60 51 chr11 83148340 83148457 -65635015 + MIR SINE MIR 16 133 -75 210 292 10 42 chr11 83148629 83148725 -65634747 - L2 LINE L2 -185 3087 2995 2144 197 18 30 chr11 83148990 83149431 -65634041 - MER63B DNA MER1_type 0 436 1 191 114 29 0 chr11 83150316 83150351 -65633121 + (GGGTG)n Simple_repeat Simple_repeat 3 38 0 469 313 91 0 chr11 83150739 83150915 -65632557 + MIR3 SINE MIR 2 193 -15 435 299 101 70 chr11 83151108 83151536 -65631936 - L2 LINE L2 0 3272 2832 235 327 17 18 chr11 83151705 83151834 -65631638 - MIR SINE MIR -74 134 2 387 220 80 49 chr11 83152334 83152471 -65631001 + MIR SINE MIR 17 136 -72 489 284 119 0 chr11 83152712 83152888 -65630584 + MIR SINE MIR 60 256 -6 265 186 0 0 chr11 83152920 83152963 -65630509 + MIR SINE MIR 217 259 -3 333 118 0 0 chr11 83154207 83154258 -65629214 + (CA)n Simple_repeat Simple_repeat 1 51 0 1694 131 0 93 chr11 83154428 83154772 -65628700 + AluJb SINE Alu 1 312 0 266 267 11 0 chr11 83154775 83154865 -65628607 + GA-rich Low_complexity Low_complexity 2 92 0 425 319 104 16 chr11 83154884 83155066 -65628406 - MIR SINE MIR -31 231 34 283 325 58 26 chr11 83155654 83155808 -65627664 + L3 LINE CR1 767 925 -652 629 356 3 45 chr11 83156114 83156406 -65627066 + L3 LINE CR1 1274 1553 -24 2043 125 3 10 chr11 83156485 83156797 -65626675 - AluSx SINE Alu -2 310 1 195 342 53 26 chr11 83157400 83157514 -65625958 + L3 LINE CR1 1459 1575 -2 579 294 71 11 chr11 83157601 83157785 -65625687 - MIR3 SINE MIR -6 202 8 354 281 0 10 chr11 83158790 83158886 -65624586 + MIR SINE MIR 168 262 0 195 310 0 0 chr11 83160525 83160583 -65622889 - MIR SINE MIR -43 219 162 378 286 79 15 chr11 83160640 83160814 -65622658 - MIR SINE MIR -39 223 39 188 229 29 19 chr11 83160858 83160963 -65622509 + CT-rich Low_complexity Low_complexity 3 108 0 413 194 7 36 chr11 83162116 83162255 -65621217 + GA-rich Low_complexity Low_complexity 4 138 0 415 255 84 28 chr11 83162264 83162465 -65621007 - MIR SINE MIR 0 262 45 2233 59 39 0 chr11 83163250 83163536 -65619936 - AluSc SINE Alu -12 297 1 384 316 53 28 chr11 83163565 83163779 -65619693 - L1ME4a LINE L1 -227 5894 5672 2479 132 46 2 chr11 83163779 83164189 -65619283 - MSTA LTR MaLR 0 428 1 384 316 53 28 chr11 83164189 83164221 -65619251 - L1ME4a LINE L1 -449 5672 5642 425 343 100 56 chr11 83164747 83165303 -65618169 - L2 LINE L2 -6 3266 2687 436 306 72 20 chr11 83165303 83165607 -65617865 + L1 LINE L1 4515 4834 -1312 1364 220 119 49 chr11 83165617 83166089 -65617383 - MLT1J LTR MaLR -6 505 1 239 325 42 18 chr11 83166139 83166305 -65617167 + L1 LINE L1 4882 5051 -1095 1780 155 3 34 chr11 83166311 83166633 -65616839 + AluJo SINE Alu 1 312 0 233 163 20 0 chr11 83166633 83166682 -65616790 + GA-rich Low_complexity Low_complexity 5 54 0 260 53 26 0 chr11 83166693 83166731 -65616741 + (GAAA)n Simple_repeat Simple_repeat 3 41 0 289 297 39 103 chr11 83167053 83167208 -65616264 - MIR3 SINE MIR -29 179 35 401 275 81 13 chr11 83167235 83167384 -65616088 - L2 LINE L2 0 3313 3155 402 276 211 6 chr11 83167443 83167599 -65615873 + MIR SINE MIR 2 189 -73 1075 175 9 28 chr11 83168390 83168601 -65614871 + AluJb SINE Alu 1 207 -105 322 286 95 19 chr11 83169061 83169166 -65614306 - MIR SINE MIR -102 160 48 271 302 0 14 chr11 83169599 83169711 -65613761 + MIR SINE MIR 79 147 -61 22 70 0 0 chr11 83171281 83171324 -65612148 + AT_rich Low_complexity Low_complexity 1 43 0 410 315 14 7 chr11 83171324 83171467 -65612005 - MIR SINE MIR -2 260 117 348 309 123 19 chr11 83171470 83171632 -65611840 + MIR SINE MIR 77 255 -7 24 67 0 0 chr11 83171671 83171716 -65611756 + AT_rich Low_complexity Low_complexity 1 45 0 342 295 62 23 chr11 83172147 83172276 -65611196 + MIR SINE MIR 18 151 -57 387 284 78 0 chr11 83172450 83172566 -65610906 + MIR3 SINE MIR 32 156 -52 607 275 49 45 chr11 83173037 83173284 -65610188 - MIR SINE MIR -2 260 13 185 284 15 30 chr11 83173641 83173708 -65609764 - L2 LINE L2 -31 3282 3217 372 248 262 13 chr11 83173819 83173968 -65609504 + MER5A DNA MER1_type 4 189 0 426 255 220 0 chr11 83173979 83174120 -65609352 + MER5B DNA MER1_type 4 175 -3 661 276 57 14 chr11 83174500 83174728 -65608744 + MIR SINE MIR 4 238 -24 198 314 59 76 chr11 83174920 83175038 -65608434 - MIR SINE MIR -56 206 91 550 288 104 27 chr11 83176970 83177192 -65606280 - MIR SINE MIR 0 262 24 559 271 117 35 chr11 83178270 83178639 -65604833 - L1ME4a LINE L1 -3 6118 5720 209 286 0 52 chr11 83179005 83179082 -65604390 + MIR SINE MIR 81 153 -109 672 264 88 15 chr11 83179228 83179434 -65604038 + MIR SINE MIR 44 262 0 205 156 0 0 chr11 83179445 83179477 -65603995 + (CACAT)n Simple_repeat Simple_repeat 4 35 0 495 260 122 50 chr11 83179573 83179754 -65603718 + MIR3 SINE MIR 1 194 -14 243 299 85 30 chr11 83180384 83180548 -65602924 - MIR SINE MIR -18 244 72 278 355 47 23 chr11 83180800 83180972 -65602500 + MER5B DNA MER1_type 3 178 0 391 281 165 30 chr11 83180981 83181145 -65602327 + MER5A DNA MER1_type 2 187 -2 284 257 68 0 chr11 83181155 83181229 -65602243 - MIR SINE MIR -56 152 74 1796 131 29 29 chr11 83181439 83181751 -65601721 + AluSx SINE Alu 1 312 0 209 328 0 0 chr11 83182005 83182066 -65601406 + MIR SINE MIR 89 149 -113 288 281 79 26 chr11 83182423 83182537 -65600935 - L2 LINE L2 0 3272 3153 334 345 126 6 chr11 83182805 83182979 -65600493 + MIR SINE MIR 54 248 -14 358 347 7 41 chr11 83183006 83183153 -65600319 - L2 LINE L2 -237 3035 2894 269 329 27 0 chr11 83184551 83184624 -65598848 - MIR SINE MIR -70 192 118 358 303 101 6 chr11 83184798 83184976 -65598496 - MIR SINE MIR -62 200 6 329 279 35 0 chr11 83185120 83185206 -65598266 - MIR3 SINE MIR -6 202 114 718 252 82 62 chr11 83185893 83186298 -65597174 - L1ME4a LINE L1 0 6121 5709 664 233 0 0 chr11 83186391 83186507 -65596965 + FLAM_C SINE Alu 2 117 -26 237 259 198 17 chr11 83186665 83186781 -65596691 + L1ME4a LINE L1 5982 6118 -3 206 164 92 21 chr11 83187180 83187237 -65596235 + MIR3 SINE MIR 99 160 -48 539 281 100 14 chr11 83187294 83187504 -65595968 + MIR SINE MIR 20 247 -15 232 222 0 19 chr11 83187508 83187562 -65595910 + (TTA)n Simple_repeat Simple_repeat 1 53 0 197 289 0 19 chr11 83187840 83187892 -65595580 + L2 LINE L2 3217 3267 -5 379 261 65 0 chr11 83188001 83188093 -65595379 - MIR SINE MIR -57 151 54 2057 125 0 3 chr11 83188097 83188392 -65595080 + AluSx SINE Alu 1 294 -18 186 339 15 0 chr11 83188412 83188477 -65594995 - MIR SINE MIR -142 120 55 200 262 250 0 chr11 83188655 83188739 -65594733 + MIR SINE MIR 47 151 -111 431 284 162 22 chr11 83189539 83189760 -65593712 - MIR3 SINE MIR -3 259 9 259 333 0 0 chr11 83190438 83190516 -65592956 + MIR SINE MIR 55 132 -76 456 182 264 31 chr11 83190690 83190838 -65592634 - MIR SINE MIR -71 191 14 244 235 278 9 chr11 83191970 83192085 -65591387 - MIR3 SINE MIR -29 179 34 320 269 121 27 chr11 83194508 83194657 -65588815 - MER103 DNA DNA -1 165 3 191 328 62 0 chr11 83194861 83194925 -65588547 + MIR SINE MIR 97 164 -98 417 160 63 63 chr11 83194925 83195100 -65588372 + L1MEc LINE L1 2032 2206 -4190 297 227 40 40 chr11 83195101 83195176 -65588296 + MIR SINE MIR 153 227 -35 425 311 140 49 chr11 83195508 83195836 -65587636 - L2 LINE L2 -1 3271 2914 425 268 67 67 chr11 83196429 83196608 -65586864 - MIR SINE MIR -52 210 32 631 196 191 10 chr11 83196834 83197038 -65586434 + MER112 DNA MER1_type 8 248 -12 561 286 6 18 chr11 83197190 83197361 -65586111 - MLT1K LTR MaLR -278 310 142 237 195 0 0 chr11 83197326 83197367 -65586105 - LTR67 LTR ERVL -386 171 131 * 400 249 116 58 chr11 83197467 83197640 -65585832 - MIR SINE MIR -60 202 20 1971 126 13 31 chr11 83197693 83198117 -65585355 + AluSx SINE Alu 1 418 0 292 327 0 0 chr11 83198560 83198664 -65584808 - MIR3 SINE MIR 0 208 105 1306 180 161 0 chr11 83198741 83198996 -65584476 + AluJo SINE Alu 2 297 -5 475 302 0 14 chr11 83199104 83199243 -65584229 - MIR SINE MIR -106 156 20 2064 152 71 43 chr11 83199510 83199930 -65583542 - MSTB1 LTR MaLR 0 432 1 198 0 0 0 chr11 83200125 83200147 -65583325 + (TCTG)n Simple_repeat Simple_repeat 2 23 0 187 337 130 70 chr11 83200150 83200565 -65582907 + L2 LINE L2 2812 3251 -21 2282 109 3 0 chr11 83200777 83201079 -65582393 + AluSg1 SINE Alu 1 303 -6 330 234 187 0 chr11 83201453 83201560 -65581912 - L1ME LINE L1 -500 5662 5536 309 274 194 8 chr11 83202131 83202331 -65581141 - MIR SINE MIR 0 262 13 255 216 20 0 chr11 83202313 83202364 -65581108 + L2 LINE L2 3241 3292 -21 * 198 302 32 0 chr11 83202404 83202467 -65581005 - MIR3 SINE MIR -7 201 137 207 309 87 32 chr11 83202506 83202632 -65580840 - L2 LINE L2 -4 3268 3136 319 294 151 0 chr11 83202809 83202935 -65580537 + L2 LINE L2 3169 3313 0 180 270 0 68 chr11 83202999 83203073 -65580399 - MIR3 SINE MIR -133 75 7 550 301 128 5 chr11 83203845 83204048 -65579424 + MIR SINE MIR 31 258 -4 341 389 38 13 chr11 83204084 83204241 -65579231 + L2 LINE L2 3107 3267 -5 843 134 31 0 chr11 83207737 83207864 -65575608 - FLAM_C SINE Alu 0 133 3 230 306 102 31 chr11 83210931 83211029 -65572443 + MIR SINE MIR 33 137 -71 855 205 9 2 chr11 83211230 83211407 -65572065 - MER5A DNA MER1_type 0 189 1 678 229 0 8 chr11 83211578 83211700 -65571772 - FLAM_C SINE Alu -21 122 2 21821 37 45 2 chr11 83211965 83214798 -65568674 - L1P LINE L1 -2813 3333 379 604 160 19 9 chr11 83214900 83215006 -65568466 + AluJb SINE Alu 174 280 -32 398 232 239 7 chr11 83215502 83215644 -65567828 - MER5A DNA MER1_type 0 189 15 407 267 64 47 chr11 83215666 83215838 -65567634 + MER5B DNA MER1_type 4 178 0 460 302 72 7 chr11 83216085 83216224 -65567248 - MIR SINE MIR -104 158 11 314 295 169 44 chr11 83217520 83217703 -65565769 + MIR SINE MIR 6 211 -51 457 278 99 7 chr11 83218458 83218633 -65564839 - MIR SINE MIR -65 143 3 198 0 0 0 chr11 83219354 83219376 -65564096 + (TTTTTG)n Simple_repeat Simple_repeat 1 22 0 492 271 199 0 chr11 83219376 83219542 -65563930 - MIR SINE MIR -14 248 50 286 263 59 68 chr11 83219588 83219706 -65563766 + MIR SINE MIR 128 244 -18 243 0 0 0 chr11 83219721 83219748 -65563724 + (TTG)n Simple_repeat Simple_repeat 2 28 0 225 119 0 0 chr11 83220429 83220471 -65563001 + (TTTG)n Simple_repeat Simple_repeat 1 42 0 2146 85 55 0 chr11 83220487 83220759 -65562713 - AluSx SINE Alu -25 287 1 240 304 22 80 chr11 83221640 83221778 -65561694 + L1MCb LINE L1 611 740 -5682 1887 243 97 31 chr11 83222125 83223004 -65560468 + L1MCb LINE L1 975 1795 -5146 186 43 0 0 chr11 83223004 83223027 -65560445 + (CA)n Simple_repeat Simple_repeat 2 24 0 1887 243 97 31 chr11 83223027 83223216 -65560256 + L1MCb LINE L1 1795 1970 -4971 2372 93 7 0 chr11 83223216 83223517 -65559955 + AluSq SINE Alu 1 303 -10 1887 243 97 31 chr11 83223517 83223564 -65559908 + L1MCb LINE L1 1970 2175 -4766 1121 165 19 29 chr11 83223616 83223822 -65559650 + AluJo SINE Alu 87 290 -22 23 0 0 0 chr11 83223822 83223845 -65559627 + AT_rich Low_complexity Low_complexity 1 23 0 485 308 99 56 chr11 83223845 83224238 -65559234 - LTR33 LTR ERVL -111 410 1 2231 103 0 3 chr11 83224856 83225147 -65558325 - AluSx SINE Alu -22 290 1 536 318 29 6 chr11 83225450 83225623 -65557849 + MIR SINE MIR 8 184 -78 1013 265 157 16 chr11 83225768 83226194 -65557278 - L2 LINE L2 0 3313 2828 410 219 65 73 chr11 83226213 83226336 -65557136 - L2 LINE L2 -7 3306 3185 331 283 61 0 chr11 83226380 83226479 -65556993 - MIR SINE MIR -53 209 105 316 267 50 20 chr11 83226533 83226634 -65556838 - MIR SINE MIR -141 121 18 217 358 130 16 chr11 83227374 83227497 -65555975 - L2 LINE L2 -7 3265 3129 235 305 72 68 chr11 83227573 83227852 -65555620 - L2 LINE L2 -12 3260 2981 492 203 68 0 chr11 83228376 83228509 -65554963 - L1ME4a LINE L1 -4 6117 5976 509 264 19 122 chr11 83229655 83229928 -65553544 + MIR SINE MIR 18 259 -3 329 326 68 0 chr11 83230171 83230303 -65553169 + L3 LINE CR1 1427 1567 -10 190 254 75 15 chr11 83230383 83230450 -65553022 - MIR SINE MIR -98 164 94 224 267 23 93 chr11 83231525 83231611 -65551861 + MIR SINE MIR 16 95 -113 325 343 59 18 chr11 83231670 83231889 -65551583 + MIR SINE MIR 20 247 -15 3940 151 112 76 chr11 83232100 83232997 -65550475 - MER21A LTR ERV1 -2 929 1 642 259 64 68 chr11 83234007 83234258 -65549214 - MIR SINE MIR -1 261 12 237 83 0 0 chr11 83234318 83234354 -65549118 + (TG)n Simple_repeat Simple_repeat 1 36 0 186 107 0 0 chr11 83234408 83234436 -65549036 + L2 LINE L2 3209 3236 -36 849 293 36 4 chr11 83234441 83234694 -65548778 - MIR SINE MIR 0 262 2 223 306 100 12 chr11 83234799 83234969 -65548503 - L2 LINE L2 -214 3099 2915 15449 49 63 3 chr11 83235076 83237143 -65546329 + L1P LINE L1 3 2192 -3954 372 264 100 7 chr11 83237589 83237729 -65545743 + MIR SINE MIR 97 249 -13 25 0 0 0 chr11 83237737 83237762 -65545710 + AT_rich Low_complexity Low_complexity 1 25 0 367 231 49 24 chr11 83238497 83238640 -65544832 - MIR SINE MIR -1 261 71 317 303 53 0 chr11 83240463 83240595 -65542877 + MIR3 SINE MIR 4 142 -66 639 245 37 27 chr11 83240765 83240953 -65542519 + MIR3 SINE MIR 16 205 -3 248 313 84 30 chr11 83241073 83241239 -65542233 + L2 LINE L2 3139 3313 0 260 295 207 14 chr11 83241924 83242062 -65541410 + MIR SINE MIR 19 176 -65 406 273 50 33 chr11 83242101 83242222 -65541250 - L2 LINE L2 0 3272 3150 502 259 30 71 chr11 83242317 83242514 -65540958 + MIR SINE MIR 20 208 -54 230 309 40 32 chr11 83242559 83242685 -65540787 - MIR SINE MIR -50 212 86 187 229 0 98 chr11 83242746 83242807 -65540665 - MIR SINE MIR -65 143 89 191 325 25 38 chr11 83243508 83243588 -65539884 + MIR SINE MIR 108 186 -76 352 339 8 40 chr11 83243602 83243726 -65539746 - L2 LINE L2 -19 3253 3134 192 289 0 0 chr11 83243758 83243803 -65539669 + L2 LINE L2 3251 3295 -18 436 280 63 42 chr11 83244005 83244194 -65539278 + MIR SINE MIR 19 211 -51 240 221 39 39 chr11 83244664 83244741 -65538731 + L2 LINE L2 3196 3272 0 324 289 111 15 chr11 83245763 83245898 -65537574 - MIR SINE MIR -59 203 56 290 293 13 0 chr11 83246096 83246171 -65537301 + (TCCA)n Simple_repeat Simple_repeat 1 76 0 186 335 191 25 chr11 83246230 83246758 -65536714 - L2 LINE L2 -1637 1677 1062 225 306 32 0 chr11 83246925 83246987 -65536485 - MIR SINE MIR -66 142 79 359 262 103 0 chr11 83247464 83247596 -65535876 + MIR SINE MIR 23 173 -65 255 190 86 0 chr11 83247605 83247663 -65535809 - L2 LINE L2 -8 3305 3243 185 254 181 78 chr11 83248592 83248797 -65534675 + L2 LINE L2 2628 2853 -461 276 289 83 58 chr11 83249175 83249296 -65534176 + MIR SINE MIR 6 129 -133 229 171 53 118 chr11 83251037 83251113 -65532359 + L2 LINE L2 3240 3310 -3 215 273 273 0 chr11 83251401 83251478 -65531994 - MIR SINE MIR -133 129 32 211 271 188 0 chr11 83251582 83251667 -65531805 - MIR SINE MIR -12 250 150 195 273 318 0 chr11 83252713 83252801 -65530671 - L2 LINE L2 -2 3270 3155 270 0 0 0 chr11 83252803 83252833 -65530639 + (GA)n Simple_repeat Simple_repeat 1 30 0 785 244 39 74 chr11 83252852 83253110 -65530362 + MIR SINE MIR 2 250 -12 186 304 104 22 chr11 83253204 83253339 -65530133 + MIR SINE MIR 20 137 -71 260 364 140 0 chr11 83253970 83254113 -65529359 - MIR SINE MIR -32 230 68 757 224 56 36 chr11 83254306 83254502 -65528970 - MIR SINE MIR -17 245 46 551 243 182 6 chr11 83255046 83255089 -65528383 - MIR SINE MIR 0 262 228 2148 112 0 3 chr11 83255089 83255393 -65528079 - AluSg1 SINE Alu -4 305 3 551 243 182 6 chr11 83255393 83255530 -65527942 - MIR SINE MIR -34 228 50 202 289 0 40 chr11 83256249 83256325 -65527147 + MIR SINE MIR 67 139 -123 * 360 254 92 56 chr11 83256322 83256464 -65527008 + L2 LINE L2 3156 3302 -11 221 283 33 0 chr11 83256481 83256541 -65526931 + MIR SINE MIR 131 192 -70 186 291 55 0 chr11 83256563 83256618 -65526854 - MIR SINE MIR -28 234 177 388 259 65 0 chr11 83256749 83256857 -65526615 - L2 LINE L2 0 3313 3199 227 302 83 21 chr11 83256875 83256971 -65526501 - L2 LINE L2 -476 2838 2737 545 194 0 0 chr11 83257081 83257179 -65526293 + AluSg/x SINE Alu 209 306 -3 6695 180 24 17 chr11 83257179 83257320 -65526152 - L1 LINE L1 -2527 4321 4183 2068 101 0 36 chr11 83257320 83257628 -65525844 - AluSx SINE Alu -15 297 1 6695 180 24 17 chr11 83257628 83259262 -65524210 - L1 LINE L1 -2665 4183 2524 2117 112 3 10 chr11 83259262 83259576 -65523896 - AluSx SINE Alu 0 312 1 6695 180 24 17 chr11 83259576 83259990 -65523482 - L1 LINE L1 -4324 2524 2114 1111 149 12 99 chr11 83260061 83260303 -65523169 - AluJo SINE Alu -91 221 1 2163 163 36 12 chr11 83260303 83260801 -65522671 - L1 LINE L1 -4722 2127 1618 783 250 123 9 chr11 83262495 83262723 -65520749 - MIR SINE MIR -7 255 2 652 249 35 48 chr11 83262871 83263100 -65520372 + MIR SINE MIR 16 241 -21 319 305 110 25 chr11 83263102 83263220 -65520252 - MIR SINE MIR -16 246 119 672 235 37 90 chr11 83264421 83264689 -65518783 + MER112 DNA MER1_type 6 259 -1 339 44 0 0 chr11 83265140 83265185 -65518287 + (TG)n Simple_repeat Simple_repeat 2 46 0 1751 158 0 3 chr11 83265185 83265469 -65518003 - AluSx SINE Alu -27 285 3 304 269 26 0 chr11 83266442 83266520 -65516952 - L2 LINE L2 -8 3264 3185 432 317 22 70 chr11 83267199 83267470 -65516002 - MIR SINE MIR -1 261 4 569 276 80 28 chr11 83267477 83267705 -65515767 - MIR SINE MIR -1 261 20 255 297 66 0 chr11 83268205 83268296 -65515176 + MIR3 SINE MIR 67 163 -45 232 330 32 21 chr11 83268463 83268557 -65514915 - MIR SINE MIR -155 107 13 372 202 3 13 chr11 83269040 83269139 -65514333 + MIR SINE MIR 58 157 -51 1813 153 0 13 chr11 83269458 83269759 -65513713 - AluJb SINE Alu -15 297 1 305 295 157 38 chr11 83270319 83270638 -65512834 + L2 LINE L2 2914 3270 -2 275 277 168 25 chr11 83271401 83271520 -65511952 - L2 LINE L2 -1 3271 3136 470 303 114 46 chr11 83271645 83271969 -65511503 - L2 LINE L2 -450 2864 2519 323 233 2 0 chr11 83272451 83272524 -65510948 + MIR SINE MIR 44 118 -90 256 242 69 72 chr11 83272710 83272845 -65510627 + MIR SINE MIR 30 165 -58 841 220 40 52 chr11 83273076 83273326 -65510146 + MIR SINE MIR 11 257 -5 584 283 114 5 chr11 83273989 83274173 -65509299 - MIR SINE MIR -11 251 48 507 247 14 41 chr11 83274592 83274738 -65508734 + MIR SINE MIR 11 152 -110 539 283 71 45 chr11 83274947 83275453 -65508019 - L1MEd LINE L1 -4902 1217 699 1905 116 29 23 chr11 83275518 83275828 -65507644 - AluSx SINE Alu 0 312 1 284 257 68 0 chr11 83276038 83276112 -65507360 + MIR SINE MIR 74 152 -56 392 291 158 30 chr11 83276122 83276287 -65507185 - MER5A DNA MER1_type -2 187 2 278 355 47 23 chr11 83276296 83276468 -65507004 - MER5B DNA MER1_type 0 178 3 243 299 85 30 chr11 83276720 83276884 -65506588 + MIR SINE MIR 72 244 -18 495 260 122 50 chr11 83277515 83277696 -65505776 - MIR3 SINE MIR -14 194 1 205 156 0 0 chr11 83277792 83277824 -65505648 + (ATGTG)n Simple_repeat Simple_repeat 4 35 0 694 258 111 31 chr11 83277835 83278060 -65505412 - MIR SINE MIR 0 262 20 292 246 33 115 chr11 83278113 83278296 -65505176 - MIR SINE MIR -14 248 81 554 271 117 35 chr11 83278663 83279032 -65504440 + L1ME4a LINE L1 5720 6118 -3 550 288 104 27 chr11 83280088 83280310 -65503162 + MIR SINE MIR 24 262 0 198 314 59 76 chr11 83282242 83282360 -65501112 + MIR SINE MIR 91 206 -56 653 278 62 14 chr11 83282552 83282779 -65500693 - MIR SINE MIR -24 238 4 426 255 220 0 chr11 83283159 83283300 -65500172 - MER5B DNA MER1_type -3 175 4 372 248 262 13 chr11 83283311 83283460 -65500012 - MER5A DNA MER1_type 0 189 4 185 284 15 30 chr11 83283571 83283638 -65499834 + L2 LINE L2 3217 3282 -31 597 260 48 48 chr11 83284015 83284242 -65499230 + MIR SINE MIR 34 260 -2 387 284 78 0 chr11 83284712 83284828 -65498644 - MIR3 SINE MIR -52 156 32 342 295 62 23 chr11 83285002 83285131 -65498341 - MIR SINE MIR -57 151 18 24 67 0 0 chr11 83285562 83285607 -65497865 + AT_rich Low_complexity Low_complexity 1 45 0 348 309 123 19 chr11 83285646 83285808 -65497664 - MIR SINE MIR -7 255 77 410 315 14 7 chr11 83285811 83285954 -65497518 + MIR SINE MIR 117 260 -2 27 62 0 0 chr11 83285954 83286002 -65497470 + AT_rich Low_complexity Low_complexity 1 48 0 271 302 0 14 chr11 83287570 83287682 -65495790 - MIR SINE MIR -61 147 79 322 286 95 19 chr11 83288115 83288220 -65495252 + MIR SINE MIR 48 160 -102 1075 175 9 28 chr11 83288680 83288891 -65494581 - AluJb SINE Alu -105 207 1 402 276 211 6 chr11 83289680 83289836 -65493636 - MIR SINE MIR -73 189 2 401 275 81 13 chr11 83289895 83290044 -65493428 + L2 LINE L2 3155 3313 0 289 297 39 103 chr11 83290071 83290226 -65493246 + MIR3 SINE MIR 35 179 -29 260 53 26 0 chr11 83290548 83290586 -65492886 + (TTTC)n Simple_repeat Simple_repeat 3 41 0 233 163 20 0 chr11 83290597 83290646 -65492826 + CT-rich Low_complexity Low_complexity 5 54 0 1763 158 3 34 chr11 83290646 83290968 -65492504 - AluJo SINE Alu 0 312 1 251 319 42 18 chr11 83290974 83291140 -65492332 - L1 LINE L1 -1095 5051 4882 1364 218 119 49 chr11 83291190 83291662 -65491810 + MLT1J LTR MaLR 1 505 -6 436 306 72 20 chr11 83291672 83291976 -65491496 - L1 LINE L1 -1312 4834 4515 425 343 100 56 chr11 83291976 83292532 -65490940 + L2 LINE L2 2687 3266 -6 384 316 53 28 chr11 83293058 83293090 -65490382 + L1ME4a LINE L1 5642 5672 -449 1777 131 35 87 chr11 83293090 83293541 -65489931 + MSTA LTR MaLR 1 428 0 384 316 53 28 chr11 83293541 83293755 -65489717 + L1ME4a LINE L1 5672 5894 -227 2162 63 42 0 chr11 83293784 83294069 -65489403 + AluSc SINE Alu 1 297 -12 419 238 0 0 chr11 83294555 83294639 -65488833 + L2 LINE L2 3225 3308 -5 24 32 0 0 chr11 83294703 83294734 -65488738 + AT_rich Low_complexity Low_complexity 1 31 0 1916 144 3 28 chr11 83294800 83295120 -65488352 + AluJo SINE Alu 1 312 0 400 263 196 0 chr11 83295329 83295462 -65488010 - MIR SINE MIR -48 214 56 4052 143 17 3 chr11 83295478 83296140 -65487332 - L1MB3 LINE L1 -7 6176 5506 314 267 60 52 chr11 83296630 83296746 -65486726 + MIR SINE MIR 75 191 -71 741 289 0 28 chr11 83297146 83297364 -65486108 - MIR SINE MIR 0 262 51 21 36 0 0 chr11 83297603 83297631 -65485841 + AT_rich Low_complexity Low_complexity 1 28 0 757 237 232 0 chr11 83299822 83300033 -65483439 - MIR SINE MIR -1 261 2 535 269 38 7 chr11 83300079 83300231 -65483241 + MIR SINE MIR 16 174 -66 306 106 0 0 chr11 83300350 83300397 -65483075 + (CA)n Simple_repeat Simple_repeat 1 47 0 774 244 105 0 chr11 83300495 83300704 -65482768 + MIR SINE MIR 20 250 -12 372 206 49 10 chr11 83303465 83303567 -65479905 + L1ME4a LINE L1 5967 6072 -49 359 325 35 20 chr11 83303674 83303871 -65479601 + L2 LINE L2 2587 2786 -528 2058 139 3 0 chr11 83303898 83304193 -65479279 + AluSx SINE Alu 1 296 -16 285 270 64 82 chr11 83304475 83304575 -65478897 - MIR SINE MIR -28 234 134 207 0 0 0 chr11 83304575 83304598 -65478874 + (CAAAA)n Simple_repeat Simple_repeat 4 26 0 285 270 64 82 chr11 83304598 83304730 -65478742 - MIR SINE MIR -128 134 6 2517 175 42 12 chr11 83304794 83305275 -65478197 + LTR42 LTR ERVL 1 495 0 476 225 20 46 chr11 83305328 83305479 -65477993 - MIR3 SINE MIR -7 201 55 508 310 16 5 chr11 83305655 83305842 -65477630 + MIR3 SINE MIR 19 207 -1 264 333 33 8 chr11 83306519 83306639 -65476833 + MIR3 SINE MIR 11 133 -75 237 323 204 30 chr11 83306669 83306904 -65476568 + L2 LINE L2 2985 3260 -12 225 281 0 0 chr11 83306913 83306970 -65476502 + L3b LINE CR1 1522 1578 -5 331 218 113 42 chr11 83309004 83309146 -65474326 - MIR SINE MIR -60 202 51 512 273 44 44 chr11 83309179 83309362 -65474110 + MIR SINE MIR 46 228 -34 581 283 103 66 chr11 83310330 83310680 -65472792 + L3 LINE CR1 1036 1398 -179 331 305 133 13 chr11 83310687 83310838 -65472634 + L2 LINE L2 3102 3270 -2 322 310 30 0 chr11 83311028 83311128 -65472344 + MIR SINE MIR 40 142 -66 1456 114 28 0 chr11 83311316 83311527 -65471945 + L1PA10 LINE L1 5941 6157 -11 319 309 89 35 chr11 83312695 83312869 -65470603 - MIR SINE MIR -46 216 34 1783 191 41 3 chr11 83312933 83313273 -65470199 - MSTA LTR MaLR 0 428 76 1909 74 0 8 chr11 83313286 83313528 -65469944 - AluSg/x SINE Alu -2 308 69 2231 92 0 3 chr11 83313628 83313910 -65469562 - AluSx SINE Alu -21 291 11 388 127 0 0 chr11 83313911 83313966 -65469506 - MSTA LTR MaLR -373 55 1 260 305 125 8 chr11 83314297 83314425 -65469047 + MIR SINE MIR 46 188 -74 546 199 238 7 chr11 83314496 83314647 -65468825 - MER5A DNA MER1_type -2 187 2 234 0 0 0 chr11 83315192 83315218 -65468254 + (T)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr11 83315239 83315261 -65468211 + GC_rich Low_complexity Low_complexity 1 22 0 2372 94 7 3 chr11 83315397 83315706 -65467766 - AluSq SINE Alu -3 310 1 182 322 22 22 chr11 83315831 83315921 -65467551 + L2 LINE L2 2584 2673 -641 249 147 107 40 chr11 83316019 83316094 -65467378 + Charlie8 DNA MER1_type 57 136 -2281 401 266 91 0 chr11 83316295 83316438 -65467034 + MER113 DNA MER1_type? 1 156 -365 338 323 10 124 chr11 83316688 83316791 -65466681 + L2 LINE L2 2915 3028 -244 333 0 0 0 chr11 83316791 83316828 -65466644 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2184 104 4 0 chr11 83316828 83317108 -65466364 - AluSp SINE Alu -32 281 1 338 323 10 124 chr11 83317108 83317405 -65466067 + L2 LINE L2 3026 3270 -2 477 256 166 25 chr11 83318615 83318814 -65464658 + MIR SINE MIR 21 247 -15 453 208 38 65 chr11 83318901 83319039 -65464433 + MIR SINE MIR 20 152 -61 471 254 71 24 chr11 83320270 83320439 -65463033 - MIR SINE MIR -7 255 79 247 319 32 0 chr11 83321352 83321446 -65462026 - MIR SINE MIR -84 124 28 510 275 138 5 chr11 83321925 83322143 -65461329 - MIR SINE MIR 0 262 16 467 269 88 11 chr11 83322463 83322645 -65460827 - HAL1 LINE L1 -10 2497 2302 1300 239 199 52 chr11 83322722 83323380 -65460092 - HAL1 LINE L1 -471 2036 1282 1215 243 181 75 chr11 83323435 83324432 -65459040 - HAL1 LINE L1 -1352 1155 53 398 308 37 57 chr11 83324464 83324545 -65458927 + L2 LINE L2 1955 2036 -1236 2222 108 0 0 chr11 83324545 83324862 -65458610 + AluSc SINE Alu 1 317 0 398 308 37 57 chr11 83324862 83325286 -65458186 + L2 LINE L2 2036 3267 -5 2043 126 27 0 chr11 83325405 83325699 -65457773 + AluSq SINE Alu 11 312 -1 190 299 11 23 chr11 83325715 83325802 -65457670 + MIR SINE MIR 103 188 -74 21 0 0 0 chr11 83326175 83326196 -65457276 + AT_rich Low_complexity Low_complexity 1 21 0 2258 136 16 27 chr11 83326416 83326784 -65456688 + THE1B LTR MaLR 1 364 0 280 330 53 0 chr11 83326920 83327014 -65456458 + MIR3 SINE MIR 8 106 -102 343 305 90 8 chr11 83327032 83327507 -65455965 - L1ME4a LINE L1 -207 5914 5379 323 287 123 42 chr11 83327645 83327906 -65455566 - L1ME4a LINE L1 -908 5238 4957 327 256 147 101 chr11 83327911 83328149 -65455323 - MER102b DNA MER1_type 0 341 93 256 310 139 32 chr11 83328524 83329057 -65454415 - L1ME4a LINE L1 -1534 4612 4023 349 268 32 32 chr11 83329290 83329413 -65454059 + MIR SINE MIR 127 249 -13 632 275 34 8 chr11 83330126 83330362 -65453110 + MIR SINE MIR 14 255 -7 984 224 31 4 chr11 83330378 83330632 -65452840 - MIR SINE MIR 0 262 2 257 353 36 63 chr11 83332042 83332208 -65451264 + MIR SINE MIR 34 194 -68 1790 171 0 47 chr11 83332208 83332313 -65451159 + AluJo SINE Alu 1 109 -203 2226 124 3 0 chr11 83332313 83332612 -65450860 + AluSq SINE Alu 1 300 -13 1790 171 0 47 chr11 83332612 83332827 -65450645 + AluJo SINE Alu 109 306 -6 257 353 36 63 chr11 83332827 83332881 -65450591 + MIR SINE MIR 194 248 -14 1606 164 46 75 chr11 83333521 83333677 -65449795 + MLT1B LTR MaLR 13 172 -218 2335 103 0 0 chr11 83333677 83333977 -65449495 + AluSc SINE Alu 1 300 -9 1606 164 46 75 chr11 83333977 83334209 -65449263 + MLT1B LTR MaLR 172 390 0 223 352 23 93 chr11 83334344 83334560 -65448912 + L2 LINE L2 3024 3224 -48 286 297 22 11 chr11 83334691 83334782 -65448690 - MIR SINE MIR -151 111 20 184 354 44 9 chr11 83335671 83335784 -65447688 + L2 LINE L2 3155 3271 -1 201 271 76 76 chr11 83336007 83336125 -65447347 + L2 LINE L2 3146 3263 -9 395 277 138 45 chr11 83336146 83336435 -65447037 + MLT1J LTR MaLR 1 316 -195 186 103 0 0 chr11 83337439 83337468 -65446004 + (TCCC)n Simple_repeat Simple_repeat 2 30 0 269 263 44 142 chr11 83337702 83337907 -65445565 + L2 LINE L2 2870 3054 -218 231 146 0 0 chr11 83338145 83338186 -65445286 + (GGAA)n Simple_repeat Simple_repeat 4 44 0 392 331 44 0 chr11 83338739 83338899 -65444573 + MIR SINE MIR 86 252 -10 192 77 0 0 chr11 83338902 83338928 -65444544 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 190 289 44 88 chr11 83339051 83339165 -65444307 + MIR SINE MIR 104 212 -50 225 0 0 0 chr11 83339377 83339402 -65444070 + (TG)n Simple_repeat Simple_repeat 2 26 0 402 285 99 29 chr11 83340050 83340222 -65443250 - MIR SINE MIR -12 250 67 289 319 8 25 chr11 83340299 83340418 -65443054 + MER5A DNA MER1_type 70 186 -3 386 214 279 0 chr11 83340449 83340589 -65442883 + MER5A DNA MER1_type 9 187 -2 180 287 81 23 chr11 83341392 83341479 -65441993 - L2 LINE L2 -47 3225 3134 1850 175 7 0 chr11 83341718 83342009 -65441463 + AluJb SINE Alu 1 293 -19 1740 167 3 26 chr11 83342062 83342368 -65441104 - AluJo SINE Alu -13 299 1 207 69 0 0 chr11 83344360 83344389 -65439083 + (CTAG)n Simple_repeat Simple_repeat 2 30 0 312 259 84 54 chr11 83344398 83344564 -65438908 - MLT1J LTR MaLR -60 451 281 505 304 68 5 chr11 83344790 83344997 -65438475 - MIR SINE MIR -23 239 20 304 304 48 16 chr11 83349615 83349740 -65433732 - MIR SINE MIR -108 154 26 480 264 12 37 chr11 83350602 83350765 -65432707 - MIR3 SINE MIR -30 178 20 438 259 40 75 chr11 83351518 83351692 -65431780 + MIR SINE MIR 23 190 -72 360 239 11 11 chr11 83351743 83351831 -65431641 - MIR SINE MIR -109 153 66 228 258 73 57 chr11 83352547 83352671 -65430801 - L2 LINE L2 0 3272 3147 1305 258 44 28 chr11 83352772 83353245 -65430227 + L1ME1 LINE L1 5255 5735 -2073 417 39 0 0 chr11 83353362 83353413 -65430059 + (A)n Simple_repeat Simple_repeat 1 51 0 969 198 18 27 chr11 83353767 83353989 -65429483 + L1ME1 LINE L1 5942 6161 -5 1017 242 182 8 chr11 83354167 83354547 -65428925 + LTR33 LTR ERVL 24 469 -52 225 307 30 10 chr11 83354675 83354776 -65428696 - L3 LINE CR1 -257 1320 1218 248 253 0 69 chr11 83355346 83355433 -65428039 - L2 LINE L2 -6 3307 3227 256 241 51 13 chr11 83356094 83356173 -65427299 - MIR SINE MIR -44 218 137 538 282 129 6 chr11 83356173 83356343 -65427129 - MIR SINE MIR -52 210 20 969 295 16 4 chr11 83356950 83357201 -65426271 - MIR SINE MIR 0 262 9 366 333 0 19 chr11 83357263 83357368 -65426104 - MIR SINE MIR -134 128 26 806 287 38 13 chr11 83357384 83357621 -65425851 + MIR SINE MIR 5 247 -15 551 290 84 19 chr11 83357691 83357905 -65425567 + MIR SINE MIR 21 248 -14 1356 192 7 25 chr11 83358551 83358832 -65424640 + AluJo SINE Alu 1 276 -36 216 0 0 0 chr11 83358840 83358864 -65424608 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 393 319 50 19 chr11 83359414 83359574 -65423898 - MIR SINE MIR -51 211 47 588 328 151 34 chr11 83359800 83360461 -65423011 + L2 LINE L2 2526 3267 -5 442 295 115 6 chr11 83360490 83360646 -65422826 - L3 LINE CR1 -11 1566 1394 731 242 6 6 chr11 83361083 83361244 -65422228 - MER117 DNA MER1_type 0 197 37 426 358 67 14 chr11 83361418 83361700 -65421772 - L3 LINE CR1 -1 1576 1280 184 122 122 24 chr11 83361785 83361826 -65421646 - L3 LINE CR1 -25 1552 1508 595 293 83 0 chr11 83364503 83364708 -65418764 - MIR SINE MIR -20 242 21 450 214 79 10 chr11 83364836 83364960 -65418512 - MER5A DNA MER1_type -36 142 1 433 335 38 0 chr11 83365349 83365507 -65417965 + MIR SINE MIR 34 197 -65 463 381 51 22 chr11 83365561 83365817 -65417655 - MIR SINE MIR -1 261 3 195 324 200 9 chr11 83366192 83366297 -65417175 + MIR SINE MIR 26 150 -112 665 264 131 7 chr11 83366316 83366522 -65416950 + L2 LINE L2 2702 2930 -342 420 20 0 0 chr11 83366689 83366738 -65416734 + (CA)n Simple_repeat Simple_repeat 1 49 0 195 42 0 0 chr11 83366740 83366764 -65416708 + (TC)n Simple_repeat Simple_repeat 2 25 0 559 256 18 43 chr11 83366831 83366995 -65416477 + L2 LINE L2 3146 3305 -8 182 244 0 24 chr11 83367027 83367068 -65416404 + L2 LINE L2 3224 3263 -9 1533 166 51 7 chr11 83367648 83367943 -65415529 + AluJb SINE Alu 1 308 -4 391 214 20 10 chr11 83368050 83368148 -65415324 + L1MD2 LINE L1 6245 6343 -16 1543 116 141 2 chr11 83368447 83368832 -65414640 - LTR54 LTR ERV1 0 510 1 509 217 76 32 chr11 83368883 83369040 -65414432 + MER103 DNA DNA 2 165 -1 279 277 32 21 chr11 83369716 83369810 -65413662 + MIR SINE MIR 75 169 -93 324 177 48 0 chr11 83370083 83370145 -65413327 - MIR SINE MIR -86 176 112 340 355 52 35 chr11 83370417 83370589 -65412883 - MIR3 SINE MIR -5 203 29 393 224 98 21 chr11 83370898 83371041 -65412431 + MIR SINE MIR 90 243 -19 2717 19 0 0 chr11 83371104 83371414 -65412058 + AluYb8 SINE Alu 1 310 -8 535 188 8 43 chr11 83371469 83371586 -65411886 - MIR SINE MIR -64 144 32 452 247 164 14 chr11 83371766 83371912 -65411560 - MIR SINE MIR -67 195 28 212 314 43 64 chr11 83372267 83372407 -65411065 - MIR SINE MIR -74 188 52 206 270 208 38 chr11 83372592 83372751 -65410721 + L2 LINE L2 2815 3000 -272 1028 211 16 52 chr11 83372791 83372957 -65410515 + MIR SINE MIR 1 157 -105 2542 171 60 38 chr11 83372957 83373506 -65409966 + MER68 LTR ERV1 1 561 -1 1028 211 16 52 chr11 83373506 83373590 -65409882 + MIR SINE MIR 157 242 -20 242 286 20 128 chr11 83373577 83373773 -65409699 + L2 LINE L2 3036 3210 -62 * 217 227 78 35 chr11 83374568 83374709 -65408763 + L2 LINE L2 2914 3060 -212 202 256 0 115 chr11 83374737 83374815 -65408657 - L2 LINE L2 0 3313 3245 233 167 24 0 chr11 83374914 83374956 -65408516 + L2 LINE L2 3270 3312 -1 209 253 160 13 chr11 83374974 83375049 -65408423 - MIR SINE MIR -18 244 159 917 245 84 16 chr11 83375049 83375298 -65408174 + MLT1H1 LTR MaLR 1 266 -289 381 75 19 0 chr11 83375313 83375366 -65408106 + MSTB1 LTR MaLR 1 54 -378 1229 165 81 17 chr11 83375366 83375602 -65407870 + AluJb SINE Alu 1 251 -61 2535 124 40 5 chr11 83375645 83376023 -65407449 + MSTB1 LTR MaLR 42 432 0 1119 238 19 23 chr11 83376033 83376294 -65407178 + MLT1H1 LTR MaLR 296 555 0 242 248 208 32 chr11 83376301 83376426 -65407046 - MIR SINE MIR -106 156 10 570 307 79 13 chr11 83376608 83376848 -65406624 - MIR SINE MIR 0 262 10 329 277 44 66 chr11 83376872 83377009 -65406463 - L3 LINE CR1 -745 832 699 206 281 144 65 chr11 83377026 83377179 -65406293 - L2 LINE L2 -211 3061 2897 444 301 134 5 chr11 83377226 83377412 -65406060 + L1ME4a LINE L1 5901 6110 -11 437 222 105 26 chr11 83378226 83378379 -65405093 + L1ME4a LINE L1 5956 6120 -1 467 259 45 40 chr11 83378546 83378747 -65404725 + MIR SINE MIR 16 217 -45 277 286 7 93 chr11 83379026 83379166 -65404306 - MIR SINE MIR -112 150 23 453 221 107 46 chr11 83379720 83379851 -65403621 - L2 LINE L2 -11 3302 3164 871 198 57 0 chr11 83379900 83380077 -65403395 + MER5A DNA MER1_type 3 189 0 2558 52 0 0 chr11 83380134 83380443 -65403029 + AluY SINE Alu 1 309 -2 226 245 129 82 chr11 83380804 83380951 -65402521 - L2 LINE L2 -92 3180 3027 180 325 237 0 chr11 83380966 83381080 -65402392 - MIR SINE MIR -22 240 100 826 260 39 5 chr11 83381093 83381314 -65402158 - MIR SINE MIR -1 261 30 206 282 141 12 chr11 83381811 83381896 -65401576 + MIR SINE MIR 117 212 -50 216 318 0 16 chr11 83381974 83382037 -65401435 - MIR SINE MIR 0 262 201 2278 107 25 28 chr11 83382921 83383314 -65400158 - L1MA2 LINE L1 -1 6303 5912 230 300 60 60 chr11 83383755 83383855 -65399617 - MIR SINE MIR -90 118 19 22 0 0 0 chr11 83383855 83383877 -65399595 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 83384037 83384058 -65399414 + AT_rich Low_complexity Low_complexity 1 21 0 422 292 108 21 chr11 83385089 83385377 -65398095 + L1ME4a LINE L1 5684 5996 -125 406 297 87 68 chr11 83385526 83385745 -65397727 - MIR SINE MIR -18 244 22 732 217 114 0 chr11 83386048 83386214 -65397258 + MIR SINE MIR 74 258 -4 475 272 109 14 chr11 83387087 83387267 -65396205 + MIR SINE MIR 6 191 -65 235 269 215 46 chr11 83387478 83387608 -65395864 - MIR3 SINE MIR -55 153 2 316 331 52 0 chr11 83387886 83388040 -65395432 - MIR SINE MIR 0 262 101 828 264 45 16 chr11 83389322 83389564 -65393908 - MIR SINE MIR -12 250 2 230 346 48 40 chr11 83389822 83390050 -65393422 + L2 LINE L2 2883 3112 -160 465 261 45 8 chr11 83390159 83390293 -65393179 + MIR SINE MIR 59 197 -65 1634 161 89 0 chr11 83391212 83391492 -65391980 - AluSx SINE Alu -7 305 1 492 215 18 167 chr11 83391613 83391841 -65391631 + MIR SINE MIR 48 241 -21 301 284 8 79 chr11 83392007 83392134 -65391338 + MIR SINE MIR 19 136 -72 428 255 176 25 chr11 83392914 83393114 -65390358 - MIR SINE MIR -12 250 18 209 252 65 98 chr11 83393845 83393968 -65389504 - MIR3 SINE MIR -23 185 67 491 361 34 61 chr11 83394211 83394538 -65388934 - L2 LINE L2 -1 3271 2954 349 269 101 63 chr11 83394595 83394899 -65388573 + L1ME LINE L1 5442 5757 -364 1055 141 36 0 chr11 83394991 83395183 -65388289 + SVA Other Other 445 643 -743 391 277 21 0 chr11 83395288 83395382 -65388090 - MIR SINE MIR -52 210 115 241 296 12 12 chr11 83395417 83395498 -65387974 - MIR SINE MIR -111 151 71 589 281 14 19 chr11 83395643 83395806 -65387666 + MIR SINE MIR 36 197 -61 392 256 24 32 chr11 83396841 83396966 -65386506 - MIR SINE MIR -27 235 112 234 286 0 14 chr11 83397318 83397388 -65386084 + L2 LINE L2 2988 3056 -216 236 216 20 0 chr11 83397531 83397582 -65385890 + L2 LINE L2 3217 3268 -4 420 227 45 23 chr11 83398059 83398147 -65385325 - L2 LINE L2 -1 3312 3223 188 323 167 0 chr11 83398132 83398228 -65385244 + MIR3 SINE MIR 14 125 -83 * 336 264 57 38 chr11 83398309 83398415 -65385057 + L2 LINE L2 3199 3306 -7 835 254 25 29 chr11 83398840 83399094 -65384378 + MIR SINE MIR 3 260 -2 188 237 17 17 chr11 83399710 83399769 -65383703 + MIR SINE MIR 99 157 -105 247 372 21 21 chr11 83399826 83399920 -65383552 - L2 LINE L2 -73 3199 3106 1000 253 56 4 chr11 83399960 83400193 -65383279 - MIR SINE MIR -5 257 13 314 281 0 0 chr11 83400195 83400277 -65383195 + MIR SINE MIR 172 253 -9 220 308 110 26 chr11 83400401 83400605 -65382867 - L2 LINE L2 -301 2971 2747 358 324 36 0 chr11 83401199 83401310 -65382162 + MIR SINE MIR 35 149 -113 280 258 31 10 chr11 83401844 83401941 -65381531 + MER20B DNA MER1_type 45 143 -640 860 191 16 48 chr11 83402013 83402201 -65381271 + LTR33 LTR ERVL 10 191 -330 963 188 135 33 chr11 83402208 83402563 -65380909 + MSTC LTR MaLR 1 428 0 215 308 39 64 chr11 83402640 83402796 -65380676 - L2 LINE L2 -241 3072 2921 2121 81 0 11 chr11 83402962 83403246 -65380226 - AluSg SINE Alu -29 281 1 397 221 143 50 chr11 83403614 83403754 -65379718 + MIR3 SINE MIR 56 208 0 213 309 202 0 chr11 83403926 83404010 -65379462 - L2 LINE L2 -1 3271 3171 432 37 0 0 chr11 83404273 83404327 -65379145 + (TG)n Simple_repeat Simple_repeat 2 55 0 198 295 54 36 chr11 83404341 83404453 -65379019 + L3 LINE CR1 931 1044 -533 260 182 52 26 chr11 83404569 83404646 -65378826 + L3 LINE CR1 1147 1225 -352 455 252 36 36 chr11 83404811 83404950 -65378522 + MIR3 SINE MIR 56 194 -14 515 343 68 0 chr11 83404979 83405215 -65378257 + L3 LINE CR1 1200 1451 -126 190 372 76 45 chr11 83405260 83405706 -65377766 + L2 LINE L2 2298 2757 -557 606 258 197 9 chr11 83405864 83406077 -65377395 + L2 LINE L2 2934 3186 -86 240 302 103 17 chr11 83406649 83406765 -65376707 + MIR SINE MIR 2 127 -135 779 317 28 4 chr11 83406785 83407034 -65376438 + MIR SINE MIR 6 260 -2 35 41 0 0 chr11 83407227 83407276 -65376196 + AT_rich Low_complexity Low_complexity 1 49 0 310 252 134 8 chr11 83407299 83407426 -65376046 - MIR SINE MIR -10 252 110 213 321 32 14 chr11 83407553 83407634 -65375838 - MIR SINE MIR -102 106 16 307 317 67 0 chr11 83407828 83407932 -65375540 - MIR SINE MIR -87 175 65 26 0 0 0 chr11 83408177 83408203 -65375269 + AT_rich Low_complexity Low_complexity 1 26 0 735 237 141 5 chr11 83408481 83408688 -65374784 + MIR SINE MIR 25 262 0 384 279 118 7 chr11 83408680 83408816 -65374656 - MIR SINE MIR -107 155 5 * 627 182 130 13 chr11 83409568 83409722 -65373750 + MIR SINE MIR 21 192 -70 631 272 33 11 chr11 83409839 83410019 -65373453 - MIR SINE MIR -15 247 64 802 285 102 34 chr11 83410135 83410489 -65372983 + MLT1K LTR MaLR 189 566 -22 386 296 144 0 chr11 83410686 83410811 -65372661 + L2 LINE L2 3128 3270 -2 272 310 0 58 chr11 83410894 83410981 -65372491 - L2 LINE L2 -3 3269 3188 384 305 102 30 chr11 83411608 83411818 -65371654 - MIR SINE MIR -24 238 17 312 337 77 6 chr11 83412554 83412723 -65370749 - L2 LINE L2 -10 3262 3082 228 349 0 15 chr11 83413684 83413750 -65369722 - L2 LINE L2 -20 3252 3188 810 227 29 0 chr11 83413827 83413999 -65369473 + MER45A DNA AcHobo 2 178 0 802 262 146 58 chr11 83414088 83414220 -65369252 + MLT1L LTR MaLR 131 250 -365 1694 137 26 49 chr11 83414220 83414527 -65368945 - AluSx SINE Alu -2 310 11 802 262 146 58 chr11 83414527 83414541 -65368931 + MLT1L LTR MaLR 250 261 -354 2242 106 0 3 chr11 83414541 83414852 -65368620 - AluSx SINE Alu -2 310 1 802 262 146 58 chr11 83414852 83415150 -65368322 + MLT1L LTR MaLR 261 615 0 389 321 102 5 chr11 83415177 83415364 -65368108 + MIR SINE MIR 57 261 -1 192 77 0 0 chr11 83416016 83416042 -65367430 + (TG)n Simple_repeat Simple_repeat 2 27 0 851 222 64 119 chr11 83416545 83416974 -65366498 + HAL1 LINE L1 2020 2418 -89 2170 98 14 0 chr11 83416974 83417269 -65366203 - AluSg SINE Alu -11 299 1 851 222 64 119 chr11 83417269 83417353 -65366119 + HAL1 LINE L1 2418 2505 -2 207 0 0 0 chr11 83418545 83418568 -65364904 + (TC)n Simple_repeat Simple_repeat 2 24 0 431 321 54 6 chr11 83419260 83419428 -65364044 + MIR SINE MIR 16 191 -71 206 265 274 10 chr11 83419467 83419569 -65363903 + MIR SINE MIR 22 150 -112 245 230 58 65 chr11 83420825 83420964 -65362508 + MIR SINE MIR 79 216 -46 207 347 14 0 chr11 83421137 83421209 -65362263 + L2 LINE L2 2939 3011 -261 * 299 314 95 18 chr11 83421199 83421368 -65362104 + MIR SINE MIR 71 252 -10 217 296 204 0 chr11 83422286 83422394 -65361078 - MIR SINE MIR -70 192 63 598 265 65 58 chr11 83422394 83422545 -65360927 + MIR SINE MIR 1 156 -106 910 210 0 0 chr11 83422545 83422707 -65360765 + FRAM SINE Alu 2 163 -3 598 265 65 58 chr11 83422707 83422815 -65360657 + MIR SINE MIR 156 262 0 2264 99 30 15 chr11 83423332 83423664 -65359808 - MER1B DNA MER1_type 0 337 1 248 333 65 0 chr11 83423902 83424025 -65359447 + MIR SINE MIR 120 250 -12 295 230 96 67 chr11 83425118 83425253 -65358219 + MIR3 SINE MIR 67 205 -3 24 0 0 0 chr11 83425557 83425581 -65357891 + AT_rich Low_complexity Low_complexity 1 24 0 2693 16 0 0 chr11 83425694 83425999 -65357473 - AluYb8 SINE Alu -13 305 1 393 224 98 21 chr11 83426062 83426205 -65357267 - MIR SINE MIR -19 243 90 340 355 52 35 chr11 83426514 83426686 -65356786 + MIR3 SINE MIR 29 203 -5 324 177 48 0 chr11 83426958 83427020 -65356452 + MIR SINE MIR 112 176 -86 279 277 32 21 chr11 83427293 83427387 -65356085 - MIR SINE MIR -93 169 75 509 217 76 32 chr11 83428063 83428220 -65355252 - MER103 DNA DNA -1 165 2 1545 116 141 2 chr11 83428271 83428656 -65354816 + LTR54 LTR ERV1 1 510 0 428 212 10 10 chr11 83428955 83429054 -65354418 - L1MD2 LINE L1 -16 6343 6245 255 398 15 25 chr11 83430118 83430319 -65353153 + L2 LINE L2 2893 3091 -181 255 302 79 32 chr11 83430338 83430464 -65353008 + MIR SINE MIR 131 262 0 340 314 25 16 chr11 83430513 83430634 -65352838 + L2 LINE L2 3151 3272 0 766 233 103 32 chr11 83430699 83431047 -65352425 - L1ME4a LINE L1 -38 6083 5711 605 232 36 63 chr11 83431782 83432005 -65351467 + MIR SINE MIR 18 228 -34 205 290 14 0 chr11 83432015 83432084 -65351388 - L2 LINE L2 -330 2942 2873 256 204 0 0 chr11 83432533 83432582 -65350890 - MIR SINE MIR -2 260 212 1244 133 13 51 chr11 83432696 83432821 -65350651 + MER30 DNA MER1_type 1 114 -116 1195 190 9 101 chr11 83432821 83433148 -65350324 + AluJb SINE Alu 3 299 -3 1244 133 13 51 chr11 83433148 83433256 -65350216 + MER30 DNA MER1_type 114 225 -5 283 114 0 0 chr11 83433688 83433732 -65349740 + Alu SINE Alu 256 299 -3 * 799 133 0 16 chr11 83433717 83433845 -65349627 + MER30 DNA MER1_type 105 230 0 400 304 45 49 chr11 83433971 83434214 -65349258 - MIR SINE MIR -15 247 6 330 318 62 0 chr11 83435305 83435434 -65348038 - MIR3 SINE MIR -18 190 54 656 283 42 14 chr11 83435984 83436196 -65347276 - MIR SINE MIR -14 248 31 13752 128 15 6 chr11 83436386 83438433 -65345039 + Tigger1 DNA MER2_type 3 2067 -351 243 277 85 43 chr11 83438518 83438612 -65344860 - MIR SINE MIR -68 140 43 1702 220 124 61 chr11 83439344 83439646 -65343826 - L1MC4 LINE L1 0 8042 7761 2255 61 10 3 chr11 83439646 83439942 -65343530 - AluY SINE Alu -13 298 1 1702 220 124 61 chr11 83439942 83440349 -65343123 - L1MC4 LINE L1 -281 7761 7288 276 294 141 6 chr11 83440398 83440561 -65342911 + L2 LINE L2 1815 1999 -1315 * 321 295 57 9 chr11 83440554 83440659 -65342813 + L2 LINE L2 3204 3313 0 263 281 0 0 chr11 83440673 83440730 -65342742 + MIR SINE MIR 19 75 -133 312 245 50 86 chr11 83441776 83441915 -65341557 + MIR SINE MIR 22 155 -107 645 223 47 47 chr11 83441922 83442137 -65341335 - MIR SINE MIR -12 250 36 207 194 0 0 chr11 83442600 83442636 -65340836 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 1746 170 28 75 chr11 83442742 83443131 -65340341 - MLT1A2 LTR MaLR -1 373 3 203 178 0 44 chr11 83443392 83443437 -65340035 + L2 LINE L2 3267 3309 -4 313 256 135 0 chr11 83444021 83444177 -65339295 - MIR SINE MIR -41 221 45 237 370 54 0 chr11 83444722 83444814 -65338658 - MIR SINE MIR -6 256 160 1171 99 32 77 chr11 83444893 83445114 -65338358 - MER2 DNA MER2_type -134 211 1 394 143 71 0 chr11 83445114 83445184 -65338288 - MIR SINE MIR -108 154 80 969 239 74 72 chr11 83445661 83446134 -65337338 - MER113 DNA MER1_type? -47 474 1 411 294 52 7 chr11 83446135 83446271 -65337201 - MIR3 SINE MIR -49 159 18 187 262 111 56 chr11 83447196 83447322 -65336150 + MIR3 SINE MIR 6 138 -70 196 354 0 0 chr11 83447876 83447947 -65335525 + MIR SINE MIR 74 144 -64 899 231 148 14 chr11 83447954 83448244 -65335228 + MER46C DNA MER2_type 1 329 -9 207 0 0 0 chr11 83448578 83448601 -65334871 + (CAA)n Simple_repeat Simple_repeat 2 24 0 315 318 177 20 chr11 83449270 83449468 -65334004 + MIR SINE MIR 28 256 -6 312 317 183 6 chr11 83450205 83450385 -65333087 - MIR SINE MIR -50 212 1 488 257 95 7 chr11 83451298 83451446 -65332026 - MIR3 SINE MIR -32 176 16 348 275 62 76 chr11 83451839 83452050 -65331422 + L2 LINE L2 2915 3122 -150 211 260 0 0 chr11 83452184 83452234 -65331238 - L2 LINE L2 -13 3259 3210 315 326 101 0 chr11 83452238 83452367 -65331105 - MIR SINE MIR -95 167 26 206 271 0 0 chr11 83452996 83453044 -65330428 + L2 LINE L2 3209 3256 -16 257 307 114 0 chr11 83453916 83454056 -65329416 + MIR3 SINE MIR 43 198 -10 356 324 0 9 chr11 83454257 83454365 -65329107 + L2 LINE L2 3197 3303 -10 2131 113 3 26 chr11 83455006 83455308 -65328164 - AluSg SINE Alu -13 297 3 2346 109 0 0 chr11 83455310 83455614 -65327858 - AluSc SINE Alu -5 304 1 218 336 71 44 chr11 83456049 83456149 -65327323 + MIR SINE MIR 26 122 -140 1908 127 20 7 chr11 83456149 83456441 -65327031 - AluSx SINE Alu -16 296 1 218 336 71 44 chr11 83456441 83456566 -65326906 + MIR SINE MIR 122 257 -5 535 259 7 124 chr11 83457337 83457611 -65325861 + MIR SINE MIR 18 259 -3 348 268 108 105 chr11 83458244 83458595 -65324877 + L2 LINE L2 2920 3271 -1 2007 161 19 35 chr11 83459196 83459563 -65323909 + MSTB LTR MaLR 1 361 -65 1149 204 0 5 chr11 83459564 83459775 -65323697 - AluJb SINE Alu -17 295 86 359 164 0 15 chr11 83459775 83459842 -65323630 + MSTB LTR MaLR 367 432 0 285 237 0 0 chr11 83459980 83460039 -65323433 - MIR SINE MIR -62 146 88 343 331 52 9 chr11 83460176 83460409 -65323063 + MIR SINE MIR 16 256 -6 331 253 123 45 chr11 83462121 83462275 -65321197 + L1ME4a LINE L1 5942 6107 -14 21 0 0 0 chr11 83462275 83462296 -65321176 + AT_rich Low_complexity Low_complexity 1 21 0 819 226 0 0 chr11 83462296 83462451 -65321021 - FAM SINE Alu -19 166 12 2356 104 0 3 chr11 83462566 83462875 -65320597 - AluSc SINE Alu -1 308 1 306 240 107 66 chr11 83462933 83463268 -65320204 + L1ME3A LINE L1 5599 5941 -180 22 0 0 0 chr11 83463739 83463761 -65319711 + AT_rich Low_complexity Low_complexity 1 22 0 4694 165 25 18 chr11 83463940 83464824 -65318648 - L1MB8 LINE L1 -9 6169 5280 458 221 104 43 chr11 83464840 83465003 -65318469 - L2 LINE L2 -14 3299 3127 1346 50 0 0 chr11 83465123 83465303 -65318169 + (G)n Simple_repeat Simple_repeat 1 180 0 204 115 0 0 chr11 83465324 83465350 -65318122 + (G)n Simple_repeat Simple_repeat 1 26 0 867 302 26 4 chr11 83465388 83465653 -65317819 - L2 LINE L2 -234 3079 2809 455 262 43 7 chr11 83465891 83466032 -65317440 - MIR SINE MIR -70 192 47 186 323 10 42 chr11 83466128 83466224 -65317248 + MIR SINE MIR 158 250 -12 215 154 26 0 chr11 83466245 83466284 -65317188 + CT-rich Low_complexity Low_complexity 2 41 0 1541 139 135 0 chr11 83466286 83466552 -65316920 - AluSx SINE Alu 0 302 1 228 35 0 0 chr11 83467157 83467186 -65316286 + (CA)n Simple_repeat Simple_repeat 2 30 0 258 353 88 0 chr11 83467395 83467565 -65315907 - MIR SINE MIR -11 251 67 235 337 33 0 chr11 83467707 83467799 -65315673 - MIR SINE MIR -74 134 40 288 185 15 0 chr11 83467921 83467986 -65315486 + L1ME3A LINE L1 6105 6170 0 1597 196 64 8 chr11 83468557 83468915 -65314557 - MLT1C LTR MaLR -55 412 35 370 260 150 0 chr11 83468992 83469119 -65314353 - MIR SINE MIR -116 146 1 6031 61 1 0 chr11 83469173 83469973 -65313499 + L1PA7 LINE L1 5394 6194 0 289 312 159 0 chr11 83469988 83470126 -65313346 - MIR SINE MIR -67 195 36 272 352 56 31 chr11 83470885 83471081 -65312391 - L2 LINE L2 -96 3176 2976 222 306 37 52 chr11 83471177 83471311 -65312161 - L2 LINE L2 -303 2969 2838 234 340 28 21 chr11 83471377 83471518 -65311954 + MIR3 SINE MIR 48 189 -19 203 326 71 20 chr11 83471539 83471637 -65311835 - MIR SINE MIR -62 200 98 543 244 83 52 chr11 83471783 83472013 -65311459 - MIR SINE MIR -13 249 13 597 237 101 6 chr11 83472172 83472358 -65311114 + MIR SINE MIR 2 194 -58 368 353 106 5 chr11 83472388 83472595 -65310877 - MIR SINE MIR -12 250 23 269 197 141 0 chr11 83472964 83473035 -65310437 + MLT1L LTR MaLR 1 81 -534 343 170 0 106 chr11 83473240 83473334 -65310138 + MLT1L LTR MaLR 496 579 -36 219 343 29 19 chr11 83473762 83473867 -65309605 - L2 LINE L2 -28 3244 3139 298 240 170 10 chr11 83474779 83474879 -65308593 - L2 LINE L2 0 3313 3198 311 271 56 0 chr11 83475401 83475508 -65307964 + MIR SINE MIR 35 147 -61 404 318 45 21 chr11 83475659 83475896 -65307576 + MIR SINE MIR 13 256 -6 312 210 30 70 chr11 83476140 83476240 -65307232 - L3 LINE CR1 -132 1445 1350 1040 174 27 45 chr11 83476287 83476322 -65307150 + MIR SINE MIR 2 36 -226 672 220 23 64 chr11 83476322 83476540 -65306932 - MER3 DNA MER1_type 0 209 1 1040 174 27 45 chr11 83476540 83476728 -65306744 + MIR SINE MIR 36 221 -41 562 286 73 34 chr11 83476869 83477226 -65306246 - L1ME LINE L1 -480 5641 5271 21 0 0 0 chr11 83477302 83477323 -65306149 + AT_rich Low_complexity Low_complexity 1 21 0 266 312 99 25 chr11 83477855 83478057 -65305415 - MIR SINE MIR -11 251 35 2039 125 3 32 chr11 83478132 83478445 -65305027 - AluSx SINE Alu -8 304 1 427 312 29 6 chr11 83478461 83478631 -65304841 + MIR SINE MIR 88 261 -1 1429 205 99 49 chr11 83478749 83479184 -65304288 + L1ME3 LINE L1 5676 6133 -29 464 294 61 10 chr11 83479289 83479486 -65303986 - MIR SINE MIR 0 262 56 1936 235 82 12 chr11 83479551 83480054 -65303418 + MLT1F LTR MaLR 5 542 0 1701 163 0 35 chr11 83480251 83480540 -65302932 - AluJb SINE Alu -25 287 9 350 368 22 5 chr11 83481016 83481239 -65302233 - L3b LINE CR1 -202 1381 1155 1812 156 3 39 chr11 83481340 83481647 -65301825 + AluJb SINE Alu 1 296 -16 341 246 123 56 chr11 83481712 83481891 -65301581 - MIR3 SINE MIR -6 202 12 499 255 0 20 chr11 83482048 83482201 -65301271 + L1MC4a LINE L1 5785 5934 -1874 29 47 0 0 chr11 83482345 83482388 -65301084 + AT_rich Low_complexity Low_complexity 1 43 0 285 263 10 61 chr11 83482685 83482784 -65300688 + MER20B DNA MER1_type 63 156 -627 287 288 72 32 chr11 83483096 83483221 -65300251 - MIR SINE MIR -111 151 22 234 264 16 4 chr11 83484338 83484477 -65298995 + MIR SINE MIR 71 256 -6 1872 291 91 45 chr11 83484868 83486243 -65297229 - L1MEc LINE L1 -4921 1475 38 258 269 15 0 chr11 83486348 83486415 -65297057 - L2 LINE L2 -50 3222 3155 189 369 54 39 chr11 83486431 83486561 -65296911 - L2 LINE L2 -5 3267 3136 295 248 68 38 chr11 83486809 83486942 -65296530 - L2 LINE L2 -459 2855 2719 455 308 29 13 chr11 83487322 83487495 -65295977 + MIR SINE MIR 4 181 -61 1160 259 144 25 chr11 83487672 83488158 -65295314 + MLT1H1 LTR MaLR 10 553 -2 244 260 0 0 chr11 83488711 83488761 -65294711 + MIR SINE MIR 201 250 -12 1679 166 20 107 chr11 83489318 83489721 -65293751 + MLT1A2 LTR MaLR 4 371 -3 418 304 43 27 chr11 83489765 83489949 -65293523 + MIR SINE MIR 6 192 -70 450 316 13 18 chr11 83489990 83490215 -65293257 + L1M4 LINE L1 17 240 -6302 2337 229 54 59 chr11 83490706 83490800 -65292672 + L1M4 LINE L1 870 963 -5862 2237 84 0 11 chr11 83490800 83491110 -65292362 + AluY SINE Alu 1 307 0 2337 229 54 59 chr11 83491110 83492317 -65291155 + L1M4 LINE L1 963 2652 -4173 2231 119 0 3 chr11 83492317 83492612 -65290860 + AluSx SINE Alu 1 294 -18 2337 229 54 59 chr11 83492612 83492786 -65290686 + L1M4 LINE L1 2652 2825 -4000 * 11227 219 74 29 chr11 83492785 83497550 -65285922 + L1PA13 LINE L1 21 5023 -1774 346 212 12 0 chr11 83497550 83497635 -65285837 + L1M4 LINE L1 3260 3345 -3299 303 306 29 29 chr11 83498025 83498195 -65285277 - MIR SINE MIR -12 250 81 1991 198 27 25 chr11 83498371 83498776 -65284696 + MLT2D LTR ERVL 1 406 -8 253 295 9 62 chr11 83498915 83499027 -65284445 - MIR SINE MIR -62 146 41 1184 262 52 50 chr11 83500043 83500639 -65282833 - L1ME4a LINE L1 -176 5945 5349 555 289 39 0 chr11 83501186 83501366 -65282106 - MIR3 SINE MIR -4 204 18 2479 110 22 6 chr11 83501392 83501748 -65281724 + THE1B LTR MaLR 1 362 -2 2352 83 63 20 chr11 83502025 83502373 -65281099 - THE1B LTR MaLR -1 363 1 413 236 27 9 chr11 83502457 83502567 -65280905 + MIR SINE MIR 34 145 -63 219 243 311 29 chr11 83503987 83504090 -65279382 - MIR SINE MIR -15 247 116 243 284 134 0 chr11 83505173 83505307 -65278165 + MER117 DNA MER1_type 44 195 -2 486 246 125 69 chr11 83505361 83505710 -65277762 + L2 LINE L2 2724 3313 0 458 204 384 17 chr11 83506703 83506875 -65276597 - MIR SINE MIR -15 247 13 303 28 0 0 chr11 83507051 83507087 -65276385 + (TG)n Simple_repeat Simple_repeat 2 37 0 1339 281 157 20 chr11 83507237 83508224 -65275248 - L2 LINE L2 -24 3289 2164 702 268 68 21 chr11 83508419 83508654 -65274818 + MIR SINE MIR 17 262 0 470 276 138 28 chr11 83508998 83509281 -65274191 + L1MC4a LINE L1 5883 6196 -1612 822 199 53 12 chr11 83509367 83509538 -65273934 + MER45A DNA AcHobo 1 178 0 558 286 0 0 chr11 83509755 83509888 -65273584 - MER94 DNA DNA 0 134 2 198 150 0 0 chr11 83510018 83510058 -65273414 + (CA)n Simple_repeat Simple_repeat 1 40 0 406 235 0 98 chr11 83510394 83510526 -65272946 - MIR3 SINE MIR -9 199 81 282 342 130 50 chr11 83511199 83511538 -65271934 - L2 LINE L2 0 3272 2907 184 281 35 0 chr11 83512381 83512438 -65271034 - L2 LINE L2 -8 3264 3206 333 298 44 35 chr11 83512567 83512681 -65270791 + L2 LINE L2 3158 3272 0 681 233 77 29 chr11 83512919 83513259 -65270213 - LTR16C LTR ERVL -7 484 50 232 318 0 0 chr11 83513376 83513439 -65270033 + MIR3 SINE MIR 145 207 -1 471 313 31 31 chr11 83513715 83513878 -65269594 - MIR SINE MIR -14 248 86 318 189 16 8 chr11 83514285 83514407 -65269065 + (ATG)n Simple_repeat Simple_repeat 1 123 0 575 292 54 33 chr11 83514415 83514655 -65268817 - MIR SINE MIR -6 256 12 2210 97 0 7 chr11 83514853 83515153 -65268319 + AluSx SINE Alu 1 298 -14 273 292 17 0 chr11 83515552 83515625 -65267847 - MIR SINE MIR -89 119 45 255 286 75 62 chr11 83515720 83515881 -65267591 + MIR3 SINE MIR 20 182 -26 252 247 78 40 chr11 83516372 83516489 -65266983 - MIR SINE MIR -62 146 23 206 309 62 0 chr11 83516730 83516811 -65266661 + L2 LINE L2 3137 3222 -50 357 24 0 0 chr11 83516836 83516878 -65266594 + (TGAA)n Simple_repeat Simple_repeat 2 43 0 25 0 0 0 chr11 83516954 83516979 -65266493 + AT_rich Low_complexity Low_complexity 1 25 0 400 250 48 48 chr11 83517105 83517229 -65266243 - MIR SINE MIR -63 199 76 331 319 69 0 chr11 83518170 83518286 -65265186 - MIR SINE MIR -14 248 125 311 295 67 34 chr11 83518850 83518999 -65264473 - MIR3 SINE MIR 0 208 55 412 291 44 13 chr11 83519410 83519568 -65263904 - MIR SINE MIR -37 225 63 789 246 134 13 chr11 83519597 83519821 -65263651 + MIR SINE MIR 12 262 0 1327 221 31 82 chr11 83519888 83520278 -65263194 - LTR16A LTR ERVL 0 450 81 366 300 21 21 chr11 83520401 83520541 -65262931 + MER5A DNA MER1_type 50 189 0 24 32 0 0 chr11 83520627 83520658 -65262814 + AT_rich Low_complexity Low_complexity 1 31 0 278 264 81 11 chr11 83520770 83520857 -65262615 - L2 LINE L2 -49 3264 3172 424 309 72 11 chr11 83521740 83521921 -65261551 - MIR SINE MIR -14 248 57 223 264 28 0 chr11 83522495 83522567 -65260905 + GA-rich Low_complexity Low_complexity 1 74 0 443 286 121 14 chr11 83522595 83522735 -65260737 + L2 LINE L2 3112 3266 -6 197 260 0 0 chr11 83522767 83522817 -65260655 + L2 LINE L2 3217 3266 -6 238 358 0 0 chr11 83523104 83523185 -65260287 + L2 LINE L2 3192 3272 0 861 234 68 5 chr11 83523372 83523577 -65259895 + MER20 DNA MER1_type 1 218 -1 449 275 94 6 chr11 83523896 83524056 -65259416 - MIR3 SINE MIR -16 192 19 303 254 0 0 chr11 83524788 83524847 -65258625 + L2 LINE L2 3204 3262 -10 218 286 183 16 chr11 83524983 83525109 -65258363 - MIR SINE MIR -7 255 109 303 184 20 10 chr11 83525616 83525686 -65257786 + MIR SINE MIR 114 183 -79 30 0 0 0 chr11 83526150 83526180 -65257292 + AT_rich Low_complexity Low_complexity 1 30 0 199 246 135 25 chr11 83526689 83526808 -65256664 + MIR SINE MIR 13 143 -65 27 0 0 0 chr11 83526907 83526934 -65256538 + AT_rich Low_complexity Low_complexity 1 27 0 359 199 15 103 chr11 83527056 83527192 -65256280 - L1ME4a LINE L1 -3 6118 5995 299 209 306 15 chr11 83527665 83527799 -65255673 - MER5A DNA MER1_type -13 176 4 2325 82 0 16 chr11 83528305 83528620 -65254852 + AluY SINE Alu 1 310 -1 320 229 31 104 chr11 83529684 83529780 -65253692 + L2 LINE L2 3184 3272 0 214 338 172 7 chr11 83529797 83529948 -65253524 + L2 LINE L2 2227 2402 -912 299 232 37 24 chr11 83530519 83530601 -65252871 - MER90 LTR ERV1 -16 559 477 1319 55 0 0 chr11 83531220 83531383 -65252089 + L1PA8 LINE L1 6005 6167 -5 252 274 44 53 chr11 83531398 83531511 -65251961 + MIR SINE MIR 151 262 0 289 281 70 0 chr11 83531750 83531864 -65251608 + MIR SINE MIR 87 208 -54 420 300 25 17 chr11 83532389 83532509 -65250963 - MER5A DNA MER1_type -4 185 65 2082 126 0 0 chr11 83532645 83532939 -65250533 - AluSx SINE Alu -18 294 1 330 302 101 16 chr11 83532947 83533076 -65250396 + MIR SINE MIR 109 248 -14 203 125 62 104 chr11 83533402 83533450 -65250022 - L2 LINE L2 0 3272 3227 226 330 95 33 chr11 83533731 83533891 -65249581 + L2 LINE L2 2259 2444 -870 2174 160 11 6 chr11 83533891 83534254 -65249218 + MLT1A1 LTR MaLR 1 365 0 226 330 95 33 chr11 83534254 83534366 -65249106 + L2 LINE L2 2444 2548 -766 237 289 84 12 chr11 83534431 83534514 -65248958 + L2 LINE L2 2684 2772 -542 266 303 53 15 chr11 83534848 83534980 -65248492 + MLT1J2 LTR MaLR 5 141 -309 491 210 112 24 chr11 83535017 83535176 -65248296 + MLT1J1 LTR MaLR 266 501 -10 213 246 18 0 chr11 83535241 83535298 -65248174 + L2 LINE L2 3256 3313 0 266 308 85 23 chr11 83536201 83536331 -65247141 + MIR SINE MIR 49 186 -76 691 225 20 6 chr11 83536504 83536692 -65246780 - L1MB5 LINE L1 -3 6177 5983 227 275 55 18 chr11 83536884 83536993 -65246479 - L2 LINE L2 -404 2910 2798 1709 213 63 16 chr11 83538005 83538451 -65245021 + MLT1C LTR MaLR 1 467 0 304 67 22 0 chr11 83538690 83538735 -65244737 - MADE1 DNA Mariner -34 46 1 350 336 105 38 chr11 83539255 83539493 -65243979 + MIR SINE MIR 7 260 -2 2308 217 27 17 chr11 83539662 83540229 -65243243 + MER90 LTR ERV1 1 614 0 221 341 99 0 chr11 83540492 83540583 -65242889 - L3 LINE CR1 -11 1566 1467 181 265 61 51 chr11 83540618 83540716 -65242756 + L2 LINE L2 3136 3234 -38 2298 215 32 32 chr11 83541078 83541613 -65241859 + MER68 LTR ERV1 4 538 -24 227 286 43 14 chr11 83542565 83542635 -65240837 + MIR SINE MIR 36 107 -101 1166 213 0 40 chr11 83542729 83542982 -65240490 - MIR SINE MIR -2 260 18 320 306 99 8 chr11 83543110 83543231 -65240241 + MIR SINE MIR 21 152 -110 5594 83 9 3 chr11 83543237 83544045 -65239427 - L1PA11 LINE L1 -1 6173 5310 252 344 78 44 chr11 83544978 83545158 -65238314 + L2 LINE L2 2724 2909 -405 228 226 0 22 chr11 83545825 83545875 -65237597 + MIR SINE MIR 56 105 -103 702 246 225 0 chr11 83546077 83546317 -65237155 - AluYa8 SINE Alu -6 294 1 21 0 0 0 chr11 83546355 83546376 -65237096 + AT_rich Low_complexity Low_complexity 1 21 0 1994 113 17 3 chr11 83546420 83546713 -65236759 + AluSq SINE Alu 1 297 -16 260 181 75 154 chr11 83546715 83546819 -65236653 + MER112 DNA MER1_type 82 166 -94 1938 147 0 0 chr11 83546819 83547111 -65236361 - AluSx SINE Alu -18 294 3 260 181 75 154 chr11 83547111 83547194 -65236278 + MER112 DNA MER1_type 166 254 -6 538 231 50 91 chr11 83547198 83547397 -65236075 - MIR SINE MIR -52 210 20 240 231 48 96 chr11 83547442 83547546 -65235926 - MIR SINE MIR -74 134 36 1475 255 133 26 chr11 83548844 83549504 -65233968 + L2 LINE L2 2576 3307 -6 2355 69 3 7 chr11 83550020 83550324 -65233148 + AluY SINE Alu 1 303 -8 372 295 6 85 chr11 83550329 83550508 -65232964 + MIR3 SINE MIR 26 192 -16 358 351 0 8 chr11 83550999 83551130 -65232342 + L2 LINE L2 2888 3017 -255 797 208 66 0 chr11 83551340 83551537 -65231935 - L1MB3 LINE L1 -2 6181 5972 436 235 27 67 chr11 83551544 83551693 -65231779 - MIR3 SINE MIR -63 145 3 234 279 137 39 chr11 83552418 83552572 -65230900 + MIR SINE MIR 28 209 -53 377 232 32 11 chr11 83552831 83552926 -65230546 + MIR SINE MIR 60 156 -106 659 244 66 10 chr11 83553505 83553702 -65229770 + MIR SINE MIR 19 226 -36 1864 150 10 0 chr11 83553725 83554019 -65229453 - AluSx SINE Alu -15 297 1 729 181 36 42 chr11 83554207 83554373 -65229099 - MER103 DNA DNA 0 166 2 317 388 0 0 chr11 83554422 83554525 -65228947 - MIR3 SINE MIR -48 160 58 1768 110 29 4 chr11 83555719 83556000 -65227472 - L1MA7 LINE L1 0 6291 6004 529 328 38 66 chr11 83556853 83557249 -65226223 + L2 LINE L2 2884 3268 -4 188 336 129 17 chr11 83557836 83557952 -65225520 - L2 LINE L2 -64 3208 3080 498 252 0 0 chr11 83558300 83558545 -65224927 + (CA)n Simple_repeat Simple_repeat 1 245 0 287 310 51 35 chr11 83559550 83559747 -65223725 + MIR SINE MIR 32 231 -31 400 251 246 14 chr11 83559942 83560149 -65223323 - MIR SINE MIR 0 262 8 206 239 0 90 chr11 83560315 83560382 -65223090 + MIR SINE MIR 167 227 -35 195 213 43 0 chr11 83560987 83561034 -65222438 + L2 LINE L2 3219 3267 -5 300 257 104 42 chr11 83561043 83561187 -65222285 - MIR SINE MIR -2 260 108 196 363 29 20 chr11 83612093 83612195 -65171277 - L2 LINE L2 -190 3082 2980 721 209 88 22 chr11 83612296 83612478 -65170994 - MIR SINE MIR -62 200 7 233 328 133 26 chr11 83612486 83612681 -65170791 - MIR SINE MIR -19 243 28 237 132 38 57 chr11 83613293 83613346 -65170126 + GA-rich Low_complexity Low_complexity 1 52 0 372 232 121 0 chr11 83613527 83613626 -65169846 - L1MC4a LINE L1 -425 7383 7273 260 222 28 14 chr11 83613666 83613738 -65169734 + (TA)n Simple_repeat Simple_repeat 1 73 0 2096 151 21 6 chr11 83613746 83614095 -65169377 - MLT2C1 LTR ERVL -42 478 1 464 224 112 13 chr11 83614116 83614268 -65169204 - L1MC4 LINE L1 -717 7325 7159 406 308 109 16 chr11 83614275 83614473 -65168999 + MIR SINE MIR 35 250 -12 974 234 20 32 chr11 83614904 83615152 -65168320 + MIR SINE MIR 2 246 -16 646 307 11 6 chr11 83615318 83615494 -65167978 + MIR3 SINE MIR 11 187 -21 434 318 72 21 chr11 83615548 83615784 -65167688 - MIR SINE MIR -7 255 8 612 281 62 5 chr11 83615895 83616087 -65167385 + MIR SINE MIR 31 233 -29 600 265 95 57 chr11 83617347 83617822 -65165650 + L1ME4a LINE L1 5581 6073 -48 575 292 81 28 chr11 83617854 83618138 -65165334 - L2 LINE L2 -86 3227 2929 415 182 68 97 chr11 83618391 83618567 -65164905 + MER104 DNA Tc2 6 176 -4 799 156 17 139 chr11 83619181 83619419 -65164053 - MER3 DNA MER1_type 0 209 1 275 282 14 0 chr11 83619488 83619559 -65163913 - MIR SINE MIR -22 240 169 243 263 21 84 chr11 83619808 83619903 -65163569 - L3b LINE CR1 -197 1386 1298 798 285 11 81 chr11 83619941 83620192 -65163280 - MIR SINE MIR -20 242 7 27 29 0 0 chr11 83620869 83620903 -65162569 + AT_rich Low_complexity Low_complexity 1 34 0 485 335 0 19 chr11 83621464 83621625 -65161847 - L2 LINE L2 -2 3270 3113 309 301 71 0 chr11 83621906 83622019 -65161453 - MIR SINE MIR -19 243 123 476 260 130 7 chr11 83623129 83623283 -65160189 - MIR SINE MIR -56 206 34 343 320 22 2 chr11 83623352 83623504 -65159968 - MIR SINE MIR -62 146 16 331 256 139 36 chr11 83624929 83625124 -65158348 + MIR SINE MIR 45 261 -1 345 140 0 0 chr11 83625160 83625217 -65158255 + (TG)n Simple_repeat Simple_repeat 1 57 0 544 309 94 13 chr11 83625863 83626096 -65157376 - MIR SINE MIR -10 252 1 397 300 125 0 chr11 83626776 83626936 -65156536 + MIR SINE MIR 9 188 -74 631 340 43 4 chr11 83627648 83627883 -65155589 + MIR SINE MIR 9 252 -10 970 186 34 29 chr11 83628017 83628221 -65155251 + MER3 DNA MER1_type 1 205 -4 369 222 34 13 chr11 83628841 83628944 -65154528 - MLT1J LTR MaLR -305 180 28 265 289 134 0 chr11 83629208 83629305 -65154167 - MIR SINE MIR -62 146 37 272 296 0 12 chr11 83629365 83629446 -65154026 + L2 LINE L2 3193 3272 0 213 247 148 12 chr11 83629894 83629975 -65153497 + L2 LINE L2 3129 3220 -52 447 240 226 7 chr11 83630429 83630575 -65152897 - MER5A DNA MER1_type -3 186 9 196 268 56 56 chr11 83630593 83630664 -65152808 - L2 LINE L2 -557 2757 2687 311 321 0 0 chr11 83630719 83630803 -65152669 + L2 LINE L2 3230 3313 0 434 286 61 0 chr11 83631474 83631652 -65151820 + MIR SINE MIR 17 205 -57 360 312 9 0 chr11 83631968 83632077 -65151395 + MIR SINE MIR 32 141 -67 248 274 113 28 chr11 83632198 83632304 -65151168 + MIR SINE MIR 44 158 -104 198 105 0 0 chr11 83633182 83633213 -65150259 - MIR SINE MIR -119 143 114 195 266 38 63 chr11 83633297 83633376 -65150096 + L2 LINE L2 3196 3272 0 671 246 94 5 chr11 83633517 83633720 -65149752 - MIR SINE MIR -33 229 9 355 239 52 48 chr11 83634874 83634998 -65148474 + MIR SINE MIR 32 151 -73 301 277 80 36 chr11 83635016 83635128 -65148344 - L2 LINE L2 -1 3271 3155 1976 140 3 7 chr11 83635284 83635592 -65147880 - AluSx SINE Alu -5 307 1 219 208 0 0 chr11 83635624 83635672 -65147800 + MIR SINE MIR 112 159 -103 516 310 29 23 chr11 83635672 83635846 -65147626 - MLT1H LTR MaLR 0 549 375 249 280 95 60 chr11 83635875 83636107 -65147365 - MLT1H LTR MaLR -300 242 3 384 234 56 0 chr11 83636519 83636626 -65146846 - MIR SINE MIR -13 249 137 2179 127 29 66 chr11 83636934 83637236 -65146236 + THE1B LTR MaLR 1 289 -75 2046 107 0 0 chr11 83637236 83637556 -65145916 + AluY SINE Alu 1 320 0 2179 127 29 66 chr11 83637556 83637630 -65145842 + THE1B LTR MaLR 289 364 0 197 349 66 0 chr11 83638295 83638361 -65145111 + MIR3 SINE MIR 2 74 -134 260 274 27 14 chr11 83638361 83638434 -65145038 + MER91A DNA MER1_type 1 74 -122 213 262 0 0 chr11 83639199 83639241 -65144231 + G-rich Low_complexity Low_complexity 5 46 0 302 0 26 0 chr11 83639363 83639401 -65144071 + (TG)n Simple_repeat Simple_repeat 1 39 0 248 254 0 0 chr11 83640166 83640229 -65143243 + L1ME4a LINE L1 5868 5930 -191 786 169 104 7 chr11 83640538 83640692 -65142780 + MER45A DNA AcHobo 8 176 -2 191 348 59 17 chr11 83640800 83640918 -65142554 + L3 LINE CR1 1141 1263 -314 * 526 249 129 50 chr11 83640889 83641130 -65142342 - L2 LINE L2 -8 3305 3046 224 221 244 15 chr11 83641451 83641582 -65141890 + L2 LINE L2 2136 2296 -1018 213 258 16 0 chr11 83641708 83641770 -65141702 - MIR SINE MIR -128 134 72 598 263 22 0 chr11 83642242 83642379 -65141093 - MIR SINE MIR -110 152 13 399 297 124 24 chr11 83642709 83642918 -65140554 + MIR SINE MIR 33 262 0 198 103 0 0 chr11 83642988 83643017 -65140455 + (CAT)n Simple_repeat Simple_repeat 2 30 0 390 281 0 0 chr11 83643694 83643783 -65139689 + MIR SINE MIR 60 148 -114 358 323 59 59 chr11 83643961 83644147 -65139325 - MIR SINE MIR -10 252 67 342 299 11 96 chr11 83644256 83644351 -65139121 - MIR SINE MIR -34 228 153 3474 166 8 8 chr11 83644351 83644978 -65138494 - L1MB3 LINE L1 -8 6175 5549 342 299 11 96 chr11 83644978 83645059 -65138413 - MIR SINE MIR -109 153 67 403 324 14 28 chr11 83645097 83645242 -65138230 + MER5A DNA MER1_type 2 144 -45 234 277 0 0 chr11 83645305 83645370 -65138102 + (TTA)n Simple_repeat Simple_repeat 3 67 0 880 220 115 0 chr11 83646860 83647060 -65136412 - MIR SINE MIR -25 237 15 386 273 144 0 chr11 83647079 83647211 -65136261 - MIR3 SINE MIR -44 164 14 441 285 161 16 chr11 83647772 83647958 -65135514 + MIR SINE MIR 8 220 -42 222 150 0 0 chr11 83648249 83648289 -65135183 + (GGAA)n Simple_repeat Simple_repeat 3 42 0 331 309 55 24 chr11 83648498 83648663 -65134809 - L2 LINE L2 -706 2608 2439 731 221 69 56 chr11 83649219 83649450 -65134022 - MIR SINE MIR -21 241 8 184 306 51 51 chr11 83649628 83649726 -65133746 - L2 LINE L2 -1 3312 3215 345 242 167 0 chr11 83649842 83649962 -65133510 + MER103 DNA DNA 9 148 -18 1179 49 0 0 chr11 83650227 83650371 -65133101 + MLT2A1 LTR ERVL 1 144 -300 31582 67 7 4 chr11 83650482 83654390 -65129082 + HERVL LTR ERVL 4 3925 -1729 12109 213 93 15 chr11 83654391 83656121 -65127351 + L1PB1 LINE L1 42 2104 -4758 2259 95 0 0 chr11 83656121 83656416 -65127056 + AluY SINE Alu 3 297 -14 12109 213 93 15 chr11 83656416 83657633 -65125839 + L1PB1 LINE L1 2104 3225 -3637 2171 101 0 13 chr11 83657637 83657935 -65125537 + AluY SINE Alu 1 294 -17 9311 207 8 5 chr11 83658048 83660052 -65123420 + L1PB1 LINE L1 3566 5576 -1286 3959 134 2 7 chr11 83660161 83661073 -65122399 + L1PB1 LINE L1 5599 6506 -361 544 78 6 78 chr11 83661074 83661240 -65122232 + (TA)n Simple_repeat Simple_repeat 2 155 0 2384 139 6 0 chr11 83661255 83661614 -65121858 + L1PB1 LINE L1 6501 6861 -6 11519 80 15 0 chr11 83661626 83663088 -65120384 + HERVL LTR ERVL 3912 5395 -259 1641 75 0 24 chr11 83663188 83663400 -65120072 - AluY SINE Alu -104 207 1 5353 175 35 45 chr11 83663412 83664695 -65118777 - L1MD2 LINE L1 0 6359 5101 367 270 137 52 chr11 83664763 83664974 -65118498 + L3 LINE CR1 1277 1505 -72 329 168 142 80 chr11 83666216 83666329 -65117143 + MIR3 SINE MIR 41 160 -48 11541 145 22 12 chr11 83666387 83668035 -65115437 + L1MA3 LINE L1 3260 4957 -1348 6683 43 0 3 chr11 83668035 83668841 -65114631 + L1PA5 LINE L1 5381 6185 0 11541 145 22 12 chr11 83668841 83670205 -65113267 + L1MA3 LINE L1 4957 6305 0 230 261 80 58 chr11 83670222 83670360 -65113112 + MER112 DNA MER1_type 38 178 -82 976 229 76 45 chr11 83670360 83671179 -65112293 - L1ME3A LINE L1 -14 6156 5224 397 287 35 0 chr11 83671193 83671308 -65112164 + MER112 DNA MER1_type 136 254 -6 266 297 154 0 chr11 83671931 83672022 -65111450 - MIR SINE MIR -155 107 3 245 286 0 44 chr11 83672079 83672170 -65111302 + (CATATA)n Simple_repeat Simple_repeat 4 90 0 620 289 36 5 chr11 83672777 83672995 -65110477 - MIR SINE MIR -2 260 34 276 250 111 0 chr11 83673125 83673197 -65110275 - MIR SINE MIR -87 121 42 264 279 129 14 chr11 83673272 83673412 -65110060 + L3 LINE CR1 1139 1294 -283 212 307 104 37 chr11 83673450 83673613 -65109859 + L3 LINE CR1 1392 1565 -12 294 258 0 0 chr11 83674119 83674181 -65109291 + L2 LINE L2 3210 3271 -1 205 337 23 23 chr11 83674335 83674421 -65109051 + MIR SINE MIR 21 106 -156 1158 256 28 38 chr11 83674437 83674859 -65108613 - L1M4 LINE L1 -3069 3077 2660 890 229 64 36 chr11 83675944 83676193 -65107279 - MIR SINE MIR 0 262 7 183 186 0 0 chr11 83676427 83676470 -65107002 + (TCCA)n Simple_repeat Simple_repeat 1 43 0 211 306 129 32 chr11 83676973 83677097 -65106375 + L2 LINE L2 3132 3267 -5 248 240 27 13 chr11 83678319 83678394 -65105078 + MIR SINE MIR 132 207 -55 208 233 0 0 chr11 83678789 83678832 -65104640 - L2 LINE L2 -20 3252 3210 190 313 43 79 chr11 83678955 83679148 -65104324 + MIR SINE MIR 37 222 -40 2634 138 39 10 chr11 83679209 83679623 -65103849 - MSTB LTR MaLR 0 426 1 363 189 144 22 chr11 83680003 83680093 -65103379 + L2 LINE L2 3213 3313 0 509 177 0 34 chr11 83680573 83680720 -65102752 + CT-rich Low_complexity Low_complexity 2 143 0 418 330 75 0 chr11 83681402 83681590 -65101882 + L2 LINE L2 2890 3091 -181 200 261 92 0 chr11 83681923 83681988 -65101484 + L2 LINE L2 3200 3270 -2 194 229 203 17 chr11 83682005 83682087 -65101385 - MIR3 SINE MIR -24 184 81 183 331 68 60 chr11 83682087 83682220 -65101252 + MIR SINE MIR 2 135 -127 301 304 45 18 chr11 83682390 83682502 -65100970 - L2 LINE L2 0 3272 3158 353 330 190 11 chr11 83682590 83682869 -65100603 + L2 LINE L2 2943 3271 -1 311 338 91 19 chr11 83683326 83683536 -65099936 + MIR SINE MIR 31 255 -7 352 303 104 14 chr11 83683616 83683804 -65099668 - MIR SINE MIR -56 206 8 213 315 135 0 chr11 83684275 83684364 -65099108 - MIR SINE MIR -60 202 102 305 276 19 38 chr11 83684445 83684550 -65098922 + MIR3 SINE MIR 106 208 0 226 273 39 0 chr11 83684699 83684776 -65098696 + (TTCA)n Simple_repeat Simple_repeat 1 80 0 278 195 13 0 chr11 83684895 83684972 -65098500 + (TTTA)n Simple_repeat Simple_repeat 3 80 0 244 225 42 0 chr11 83684979 83685050 -65098422 + (TTCA)n Simple_repeat Simple_repeat 2 75 0 849 285 101 30 chr11 83685720 83686155 -65097317 + MLT1J LTR MaLR 15 480 -31 1210 252 69 22 chr11 83686287 83686692 -65096780 + MLT1C LTR MaLR 8 431 -36 198 278 42 14 chr11 83686698 83686770 -65096702 - L2 LINE L2 -525 2789 2716 291 297 29 29 chr11 83686773 83686911 -65096561 - MIR SINE MIR 0 262 125 953 246 52 4 chr11 83687146 83687378 -65096094 + MIR SINE MIR 13 255 -7 26 0 0 0 chr11 83687416 83687442 -65096030 + AT_rich Low_complexity Low_complexity 1 26 0 244 213 0 0 chr11 83687552 83687599 -65095873 - MIR SINE MIR -62 146 100 420 262 93 58 chr11 83688157 83688329 -65095143 - MIR SINE MIR -11 251 74 2677 92 28 6 chr11 83688349 83688708 -65094764 - L1PB1 LINE L1 -3 6148 5782 291 215 0 0 chr11 83688708 83688773 -65094699 + (TA)n Simple_repeat Simple_repeat 1 65 0 242 258 0 21 chr11 83688773 83688866 -65094606 - L1MC4 LINE L1 -1340 6702 6612 503 62 5 93 chr11 83688866 83689059 -65094413 + (TA)n Simple_repeat Simple_repeat 1 176 0 283 103 138 0 chr11 83689061 83689148 -65094324 + (TATAG)n Simple_repeat Simple_repeat 3 101 0 205 62 12 86 chr11 83689248 83689329 -65094143 + (TA)n Simple_repeat Simple_repeat 2 76 0 303 143 33 77 chr11 83689330 83689421 -65094051 + L1MC4 LINE L1 6617 6703 -1339 525 78 0 64 chr11 83689425 83689543 -65093929 + (TA)n Simple_repeat Simple_repeat 1 125 -7 2689 92 14 0 chr11 83689543 83689889 -65093583 + THE1A LTR MaLR 4 354 -1 525 78 0 64 chr11 83689889 83689901 -65093571 + (TA)n Simple_repeat Simple_repeat 125 125 -7 315 0 0 0 chr11 83689901 83689936 -65093536 + (TG)n Simple_repeat Simple_repeat 2 36 0 525 78 0 64 chr11 83689936 83689945 -65093527 + (TA)n Simple_repeat Simple_repeat 124 132 0 3750 172 7 0 chr11 83689945 83690938 -65092534 - L1P5 LINE L1 -360 5791 4792 316 347 65 0 chr11 83691301 83691425 -65092047 - L2 LINE L2 -8 3264 3133 516 253 215 0 chr11 83691451 83691637 -65091835 - MIR SINE MIR -1 261 36 248 279 39 116 chr11 83691681 83691939 -65091533 - L2 LINE L2 -215 3057 2820 478 295 65 15 chr11 83692011 83692211 -65091261 - MLT1J LTR MaLR -73 438 229 656 274 72 30 chr11 83692307 83692544 -65090928 - MIR SINE MIR -4 258 12 196 318 146 10 chr11 83693299 83693491 -65089981 - L2 LINE L2 -160 3112 2895 1664 214 89 51 chr11 83693581 83693955 -65089517 + MLT1H LTR MaLR 1 402 -147 522 266 0 9 chr11 83693955 83694068 -65089404 - MER81 DNA DNA 0 114 3 1664 214 89 51 chr11 83694068 83694221 -65089251 + MLT1H LTR MaLR 402 548 -1 2805 151 33 11 chr11 83695315 83695772 -65087700 + MLT1C LTR MaLR 1 467 0 267 302 50 22 chr11 83696023 83696162 -65087310 - MIR3 SINE MIR -22 186 44 468 187 13 174 chr11 83696828 83696907 -65086565 + MER94 DNA DNA 3 47 -87 1687 199 3 7 chr11 83696907 83697193 -65086279 - AluJo SINE Alu -27 285 1 468 187 13 174 chr11 83697193 83697268 -65086204 + MER94 DNA DNA 47 132 -2 782 299 81 65 chr11 83697342 83697596 -65085876 + L2 LINE L2 2371 2636 -678 1827 119 91 7 chr11 83697596 83697881 -65085591 - AluSx SINE Alu -3 309 1 782 299 81 65 chr11 83697881 83698044 -65085428 + L2 LINE L2 2636 2795 -519 1902 239 55 28 chr11 83699422 83699929 -65083543 + LTR33 LTR ERVL 1 521 0 234 305 8 34 chr11 83700084 83700202 -65083270 + L1ME4a LINE L1 5544 5658 -463 407 250 50 45 chr11 83700335 83700535 -65082937 + L1ME4a LINE L1 5699 5899 -222 1725 141 25 25 chr11 83700750 83701053 -65082419 + AluJb SINE Alu 1 303 0 466 197 17 8 chr11 83702264 83702381 -65081091 + CT-rich Low_complexity Low_complexity 1 118 0 2171 262 176 23 chr11 83702403 83703641 -65079831 - L2 LINE L2 -25 3288 1841 197 257 50 79 chr11 83703632 83703733 -65079739 + L2 LINE L2 3153 3250 -22 * 930 216 96 0 chr11 83704213 83704412 -65079060 + MER58A DNA MER1_type 1 218 -6 297 240 77 0 chr11 83704461 83704565 -65078907 + Charlie7 DNA MER1_type 44 155 -2457 285 215 31 100 chr11 83704539 83704669 -65078803 + Charlie7 DNA MER1_type 2489 2609 -3 * 420 329 37 41 chr11 83704726 83704969 -65078503 - MIR SINE MIR 0 262 21 372 304 62 9 chr11 83705362 83705474 -65077998 + MIR SINE MIR 28 145 -63 22 0 0 0 chr11 83705553 83705575 -65077897 + AT_rich Low_complexity Low_complexity 1 22 0 781 214 0 0 chr11 83705639 83705770 -65077702 + FLAM_A SINE Alu 1 131 -2 232 240 27 0 chr11 83705794 83705869 -65077603 + L1MC4 LINE L1 6620 6696 -1346 * 7496 203 28 7 chr11 83705859 83708666 -65074806 + L1MC1 LINE L1 3465 6327 -6 2003 230 42 29 chr11 83708673 83709519 -65073953 + L1MB3 LINE L1 5354 6176 -7 1833 158 3 7 chr11 83709643 83709993 -65073479 + AluJb SINE Alu 1 349 0 501 315 78 39 chr11 83710545 83710777 -65072695 - MIR SINE MIR -19 243 3 461 239 145 13 chr11 83710999 83711158 -65072314 - MIR SINE MIR -14 248 69 2473 129 29 5 chr11 83712219 83712600 -65070872 + MLT1B LTR MaLR 1 390 0 457 265 8 29 chr11 83713100 83713376 -65070096 + GA-rich Low_complexity Low_complexity 1 270 0 337 312 55 63 chr11 83713915 83714152 -65069320 + L2 LINE L2 3037 3271 -1 296 314 50 7 chr11 83714858 83714998 -65068474 + MIR SINE MIR 61 206 -56 270 327 40 0 chr11 83715058 83715159 -65068313 + L2 LINE L2 3168 3272 0 573 317 104 18 chr11 83715637 83715858 -65067614 + MIR SINE MIR 11 250 -12 214 210 170 60 chr11 83716405 83716505 -65066967 - MIR SINE MIR -132 130 20 186 296 171 0 chr11 83716650 83716738 -65066734 + L2 LINE L2 3169 3271 -1 201 74 0 0 chr11 83716842 83716869 -65066603 + (TGGA)n Simple_repeat Simple_repeat 2 28 0 460 281 17 17 chr11 83716976 83717154 -65066318 + (TGAA)n Simple_repeat Simple_repeat 3 180 0 233 412 0 0 chr11 83717086 83717222 -65066250 + (TGGA)n Simple_repeat Simple_repeat 1 136 0 * 201 302 19 0 chr11 83719683 83719736 -65063736 + MIR SINE MIR 68 121 -87 2111 111 0 0 chr11 83719766 83720045 -65063427 - AluSx SINE Alu -33 279 1 351 301 26 18 chr11 83720157 83720270 -65063202 + MIR SINE MIR 34 147 -115 1604 104 63 30 chr11 83720463 83720731 -65062741 - L1PA15 LINE L1 -2 6163 5887 225 0 0 0 chr11 83720907 83720932 -65062540 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 219 254 149 37 chr11 83720958 83721092 -65062380 + MIR SINE MIR 113 261 -1 234 0 0 0 chr11 83721904 83721930 -65061542 + (CTCA)n Simple_repeat Simple_repeat 1 26 0 2111 133 7 0 chr11 83722011 83722305 -65061167 + AluSx SINE Alu 1 296 -16 247 283 115 0 chr11 83722398 83722511 -65060961 + L1ME4a LINE L1 5981 6106 -15 1442 241 119 43 chr11 83722936 83723705 -65059767 - L1ME4a LINE L1 -1 6120 5294 306 310 190 9 chr11 83724513 83724629 -65058843 + MIR SINE MIR 20 156 -106 211 234 0 21 chr11 83725271 83725318 -65058154 - L2 LINE L2 -20 3293 3248 184 282 35 47 chr11 83725638 83725723 -65057749 - MIR3 SINE MIR -15 193 110 315 265 46 56 chr11 83725825 83725968 -65057504 + MIR SINE MIR 44 192 -62 261 0 0 0 chr11 83726595 83726624 -65056848 + (A)n Simple_repeat Simple_repeat 1 29 0 379 292 23 44 chr11 83727198 83727351 -65056121 + MIR SINE MIR 27 150 -58 217 338 103 0 chr11 83727453 83727598 -65055874 + MIR SINE MIR 21 180 -82 198 374 40 10 chr11 83727621 83727720 -65055752 + L2 LINE L2 3154 3255 -17 201 147 0 0 chr11 83727722 83727756 -65055716 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 212 300 50 12 chr11 83727960 83728040 -65055432 - MIR SINE MIR -160 102 20 313 330 66 0 chr11 83729076 83729167 -65054305 - L2 LINE L2 -36 3236 3140 874 266 22 13 chr11 83729471 83729700 -65053772 + MIR SINE MIR 29 259 -3 329 263 13 13 chr11 83729767 83729843 -65053629 + L2 LINE L2 3230 3305 -8 422 307 19 39 chr11 83730690 83730764 -65052708 - MIR SINE MIR 0 262 188 972 220 23 46 chr11 83730764 83730982 -65052490 + MER58C DNA MER1_type 3 215 0 422 307 19 39 chr11 83730982 83731112 -65052360 - MIR SINE MIR -74 188 62 1288 284 24 6 chr11 83731114 83731448 -65052024 - MER102b DNA MER1_type 0 341 2 274 304 20 20 chr11 83731456 83731558 -65051914 - MIR3 SINE MIR -42 166 65 1056 158 0 0 chr11 83731580 83731732 -65051740 - AluSg/x SINE Alu -26 286 135 432 0 0 0 chr11 83731732 83731780 -65051692 + (TTA)n Simple_repeat Simple_repeat 2 49 0 1932 142 7 0 chr11 83731782 83732063 -65051409 - AluSx SINE Alu -29 283 1 271 256 98 61 chr11 83732175 83732372 -65051100 - MIR3 SINE MIR -2 206 10 698 158 152 6 chr11 83733187 83733345 -65050127 + MER5A DNA MER1_type 9 189 0 765 290 56 0 chr11 83733354 83733585 -65049887 + MIR SINE MIR 18 261 -1 1126 316 82 13 chr11 83733997 83734531 -65048941 + HAL1 LINE L1 5 575 -1932 827 200 0 13 chr11 83734548 83734698 -65048774 + AluJb SINE Alu 161 308 -4 1310 216 101 43 chr11 83734698 83735211 -65048261 + HAL1 LINE L1 1061 1603 -904 1791 226 90 77 chr11 83735213 83736058 -65047414 + HAL1 LINE L1 1651 2506 -1 250 290 299 0 chr11 83736209 83736316 -65047156 + MIR3 SINE MIR 3 141 -67 * 281 279 88 22 chr11 83736293 83736429 -65047043 + MIR SINE MIR 118 262 0 926 222 69 33 chr11 83736933 83737266 -65046206 + L1MC5 LINE L1 6612 6956 -1005 195 42 0 0 chr11 83737317 83737341 -65046131 + (T)n Simple_repeat Simple_repeat 1 24 0 935 210 20 10 chr11 83737411 83737606 -65045866 + MER20 DNA MER1_type 3 199 -20 270 349 82 20 chr11 83737649 83737844 -65045628 - L2 LINE L2 -453 2861 2655 1743 185 85 121 chr11 83737849 83738299 -65045173 + L1MC5 LINE L1 6977 7397 -564 902 20 0 0 chr11 83738299 83738397 -65045075 + L1PA3 LINE L1 6054 6151 -4 1743 185 85 121 chr11 83738397 83738607 -65044865 + L1MC5 LINE L1 7397 7613 -348 289 176 141 24 chr11 83738610 83738695 -65044777 + L1MC5 LINE L1 7768 7862 -99 694 299 66 40 chr11 83738762 83739290 -65044182 - L1ME4a LINE L1 -254 5867 5326 1278 140 25 0 chr11 83739292 83739492 -65043980 - AluSg/x SINE Alu -3 309 105 4693 124 18 33 chr11 83740066 83740097 -65043375 + L1MA4 LINE L1 5548 5578 -722 3075 111 28 0 chr11 83740097 83740519 -65042953 - MER57B LTR ERV1 0 434 1 4693 124 18 33 chr11 83740519 83741066 -65042406 + L1MA4 LINE L1 5578 6115 -185 2075 140 13 0 chr11 83741066 83741366 -65042106 - AluSx SINE Alu -8 304 1 4693 124 18 33 chr11 83741366 83741545 -65041927 + L1MA4 LINE L1 6115 6295 -5 306 270 22 0 chr11 83741761 83741850 -65041622 + MIR SINE MIR 141 231 -31 581 225 0 8 chr11 83742608 83742728 -65040744 - L2 LINE L2 0 3313 3195 2258 88 3 0 chr11 83742916 83743199 -65040273 - AluSp SINE Alu -27 286 3 219 69 0 0 chr11 83743223 83743252 -65040220 + (TCCA)n Simple_repeat Simple_repeat 1 29 0 411 309 143 0 chr11 83743291 83743466 -65040006 + MIR SINE MIR 63 262 0 209 279 25 25 chr11 83743484 83743563 -65039909 - L2 LINE L2 -1 3271 3193 255 274 8 40 chr11 83744906 83745030 -65038442 - HAL1b LINE L1 0 1348 1229 275 214 123 70 chr11 83745076 83745263 -65038209 - L1ME4a LINE L1 -220 5901 5705 189 308 167 40 chr11 83745447 83745794 -65037678 + L2 LINE L2 2369 2759 -555 220 275 62 25 chr11 83745962 83746042 -65037430 + L2 LINE L2 2941 3023 -249 1322 186 80 19 chr11 83746042 83746152 -65037320 + AluJo SINE Alu 1 103 -209 186 43 0 0 chr11 83746152 83746175 -65037297 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1322 186 80 19 chr11 83746175 83746328 -65037144 + AluJo SINE Alu 103 280 -32 1479 174 29 0 chr11 83746375 83746650 -65036822 - L1MC4 LINE L1 -540 7502 7220 478 229 76 0 chr11 83746843 83746961 -65036511 + L2 LINE L2 3146 3272 0 457 335 85 5 chr11 83747428 83747640 -65035832 - MIR SINE MIR -6 256 28 258 255 23 68 chr11 83748073 83748314 -65035158 + GA-rich Low_complexity Low_complexity 1 230 0 226 243 149 14 chr11 83752830 83752904 -65030568 + MIR SINE MIR 78 161 -101 613 190 127 6 chr11 83752931 83753089 -65030383 - L1MC4 LINE L1 -291 7751 7575 347 253 89 7 chr11 83754323 83754469 -65029003 - L1ME LINE L1 -349 5772 5615 445 193 193 33 chr11 83755927 83756077 -65027395 - MER5A DNA MER1_type -7 182 9 218 281 191 11 chr11 83756357 83756446 -65027026 - MIR SINE MIR -135 127 23 993 199 38 0 chr11 83757158 83757344 -65026128 - MER3 DNA MER1_type -5 204 12 300 326 11 0 chr11 83757470 83757562 -65025910 + MIR SINE MIR 12 104 -158 940 269 73 8 chr11 83757675 83758058 -65025414 + L1ME4a LINE L1 5497 5904 -217 28 0 0 0 chr11 83758206 83758234 -65025238 + AT_rich Low_complexity Low_complexity 1 28 0 180 392 0 0 chr11 83758353 83758450 -65025022 - L3b LINE CR1 -167 1416 1320 341 290 84 30 chr11 83758516 83758647 -65024825 + MIR SINE MIR 48 185 -77 237 65 0 0 chr11 83759062 83759093 -65024379 + (T)n Simple_repeat Simple_repeat 1 31 0 513 248 23 0 chr11 83759296 83759425 -65024047 + MIR SINE MIR 55 186 -76 377 282 21 56 chr11 83759632 83759774 -65023698 + MIR SINE MIR 49 185 -77 424 307 36 12 chr11 83760226 83760392 -65023080 + MER5B DNA MER1_type 9 178 0 404 270 176 7 chr11 83761047 83761195 -65022277 - MER5A DNA MER1_type -4 185 13 888 298 119 8 chr11 83761576 83762056 -65021416 - L1ME4a LINE L1 -1 6120 5588 1090 289 31 8 chr11 83762415 83762768 -65020704 + L2 LINE L2 2269 2629 -685 307 333 58 0 chr11 83762774 83762930 -65020542 - MIR SINE MIR -42 220 56 232 174 22 22 chr11 83763704 83763750 -65019722 - MIR SINE MIR -197 65 20 329 272 125 0 chr11 83763893 83764029 -65019443 + L3 LINE CR1 1387 1539 -38 292 304 98 52 chr11 83764256 83764303 -65019169 + MIR SINE MIR 36 79 -183 917 158 25 113 chr11 83764303 83764332 -65019140 - MER20 DNA MER1_type 0 219 189 2225 110 0 0 chr11 83764332 83764624 -65018848 - AluY SINE Alu -14 297 6 1440 171 44 82 chr11 83764628 83764824 -65018648 - AluJb SINE Alu -9 303 122 189 0 0 0 chr11 83764824 83764845 -65018627 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 1440 171 44 82 chr11 83764845 83764963 -65018509 - AluJb SINE Alu -190 122 1 917 158 25 113 chr11 83764963 83765168 -65018304 - MER20 DNA MER1_type -33 186 1 292 304 98 52 chr11 83765168 83765314 -65018158 + MIR SINE MIR 79 238 -24 207 0 0 0 chr11 83765723 83765746 -65017726 + (A)n Simple_repeat Simple_repeat 1 23 0 469 301 53 26 chr11 83765863 83766089 -65017383 + MIR SINE MIR 21 252 -10 321 261 11 11 chr11 83766865 83766957 -65016515 - MIR SINE MIR -148 114 23 315 0 0 0 chr11 83766998 83767033 -65016439 + (TG)n Simple_repeat Simple_repeat 2 36 0 390 267 69 8 chr11 83768619 83768750 -65014722 + MER103 DNA DNA 12 150 -16 224 250 153 32 chr11 83769575 83769699 -65013773 - MIR SINE MIR -79 183 45 337 298 0 0 chr11 83770242 83770336 -65013136 - MARNA DNA Mariner -61 525 432 358 333 93 44 chr11 83770366 83770775 -65012697 - L2 LINE L2 -1 3271 2843 545 252 84 0 chr11 83770996 83771127 -65012345 + MER3 DNA MER1_type 3 144 -65 580 309 39 0 chr11 83772497 83772701 -65010771 + MIR SINE MIR 26 237 -25 3424 211 39 13 chr11 83772783 83773554 -65009918 + L1ME1 LINE L1 5371 6161 -5 511 287 63 0 chr11 83773659 83773833 -65009639 + MIR SINE MIR 50 234 -28 346 286 94 23 chr11 83774123 83774294 -65009178 - MIR3 SINE MIR -9 199 17 241 292 94 1 chr11 83774869 83775010 -65008462 - MIR SINE MIR -69 139 16 387 202 0 0 chr11 83775073 83775162 -65008310 + (TG)n Simple_repeat Simple_repeat 1 89 0 537 231 112 77 chr11 83775343 83775655 -65007817 - L1MC4 LINE L1 -91 7951 7629 729 294 48 4 chr11 83776603 83776831 -65006641 - MIR SINE MIR -11 251 14 270 265 113 40 chr11 83777768 83777919 -65005553 + MIR SINE MIR 23 184 -78 220 167 0 0 chr11 83778148 83778190 -65005282 + MIR SINE MIR 102 143 -119 267 79 0 0 chr11 83778298 83778336 -65005136 + (TG)n Simple_repeat Simple_repeat 2 39 0 343 242 140 38 chr11 83778475 83778632 -65004840 - MIR SINE MIR -6 256 84 302 196 185 0 chr11 83778797 83778889 -65004583 - L2 LINE L2 -2 3311 3203 1003 252 46 42 chr11 83778990 83779122 -65004350 - LTR16C LTR ERVL 0 491 361 1421 103 75 0 chr11 83779122 83779336 -65004136 - MER30 DNA MER1_type 0 230 1 1003 252 46 42 chr11 83779336 83779509 -65003963 - LTR16C LTR ERVL -130 361 185 393 117 0 0 chr11 83780162 83780222 -65003250 + (CA)n Simple_repeat Simple_repeat 1 60 0 189 232 73 37 chr11 83780930 83781012 -65002460 - MER5A DNA MER1_type -2 187 103 2124 142 7 0 chr11 83781079 83781389 -65002083 + AluSx SINE Alu 1 312 0 627 187 24 0 chr11 83781389 83781512 -65001960 + MER5A DNA MER1_type 63 188 -1 424 335 105 10 chr11 83781693 83781893 -65001579 + MIR SINE MIR 44 262 0 252 265 31 20 chr11 83782256 83782354 -65001118 + L2 LINE L2 3211 3309 -4 225 303 66 25 chr11 83782528 83782650 -65000822 + MIR3 SINE MIR 34 160 -48 1149 248 93 29 chr11 83782689 83783097 -65000375 - MER113 DNA MER1_type? -56 465 32 207 0 0 0 chr11 83783412 83783435 -65000037 + (T)n Simple_repeat Simple_repeat 1 23 0 478 237 77 12 chr11 83783886 83784055 -64999417 + MIR SINE MIR 53 232 -30 207 69 0 0 chr11 83784079 83784108 -64999364 + (TAA)n Simple_repeat Simple_repeat 3 31 0 1158 151 18 32 chr11 83784651 83784870 -64998602 - L1MB5 LINE L1 -6 6168 5953 283 306 109 0 chr11 83785307 83785454 -64998018 + MIR SINE MIR 48 210 -52 290 210 62 68 chr11 83785811 83785961 -64997511 + MIR SINE MIR 115 262 0 211 162 0 0 chr11 83786376 83786413 -64997059 - L2 LINE L2 -9 3304 3268 218 278 0 19 chr11 83787175 83787229 -64996243 - L2 LINE L2 -97 3175 3123 190 129 0 0 chr11 83787231 83787262 -64996210 + L2 LINE L2 3149 3179 -93 411 279 192 0 chr11 83787563 83787792 -64995680 + L1ME4a LINE L1 5847 6119 -2 421 268 79 8 chr11 83787945 83788072 -64995400 + L2 LINE L2 3125 3260 -12 395 308 23 0 chr11 83788528 83788661 -64994811 - MIR SINE MIR -17 245 110 383 38 19 0 chr11 83789136 83789189 -64994283 + (TG)n Simple_repeat Simple_repeat 2 55 0 288 235 0 59 chr11 83789238 83789323 -64994149 + L3 LINE CR1 1453 1532 -45 558 255 69 52 chr11 83789328 83789559 -64993913 - MIR SINE MIR 0 262 28 296 316 9 26 chr11 83789652 83789766 -64993706 + L3 LINE CR1 1452 1563 -14 277 280 43 43 chr11 83790270 83790456 -64993016 + L2 LINE L2 2906 3091 -181 198 0 0 0 chr11 83790515 83790537 -64992935 + (T)n Simple_repeat Simple_repeat 1 22 0 360 254 8 35 chr11 83790763 83790877 -64992595 - MIR SINE MIR -71 137 44 611 280 10 37 chr11 83791842 83792067 -64991405 + MIR SINE MIR 22 238 -24 274 177 16 32 chr11 83793294 83793356 -64990116 - MIR SINE MIR -93 169 109 376 272 58 10 chr11 83793844 83793947 -64989525 + L2 LINE L2 3140 3247 -25 1252 193 11 49 chr11 83794165 83794450 -64989022 - MLT1C LTR MaLR -2 465 192 897 238 21 62 chr11 83794433 83794673 -64988799 - MLT1C LTR MaLR -231 236 7 * 314 280 77 15 chr11 83794757 83794923 -64988549 - MIR SINE MIR -72 190 20 244 254 59 59 chr11 83795827 83795945 -64987527 - MIR SINE MIR -54 208 91 229 337 158 27 chr11 83795939 83796123 -64987349 + MIR SINE MIR 38 245 -17 * 245 306 0 51 chr11 83796509 83796607 -64986865 - MIR SINE MIR -57 151 59 1255 207 86 25 chr11 83797422 83797736 -64985736 - MER46C DNA MER2_type 0 338 6 557 249 224 0 chr11 83798044 83798245 -64985227 - MIR SINE MIR -3 259 14 339 283 87 0 chr11 83798331 83798469 -64985003 - MIR SINE MIR 0 262 113 209 344 57 27 chr11 83799052 83799314 -64984158 + L2 LINE L2 2461 2730 -584 1859 143 60 57 chr11 83799326 83799711 -64983761 - MER58D DNA MER1_type 0 386 1 367 264 10 107 chr11 83799719 83799823 -64983649 - MER5B DNA MER1_type 0 178 100 1861 166 10 7 chr11 83799823 83800131 -64983341 + AluJo SINE Alu 2 310 -2 367 264 10 107 chr11 83800131 83800223 -64983249 - MER5B DNA MER1_type -78 100 1 202 312 218 43 chr11 83800253 83800647 -64982825 + L2 LINE L2 2809 3271 -1 1798 163 54 0 chr11 83801262 83801556 -64981916 - AluJb SINE Alu -2 310 1 341 273 23 23 chr11 83801722 83801850 -64981622 - MIR SINE MIR -78 184 57 2681 233 64 38 chr11 83801859 83803175 -64980297 - L1ME3A LINE L1 -5 6165 4818 869 174 47 17 chr11 83803955 83804127 -64979345 - MER5B DNA MER1_type -1 177 1 2268 90 0 0 chr11 83804288 83804621 -64978851 - AluSx SINE Alu 0 340 8 289 358 15 29 chr11 83804652 83804789 -64978683 - MIR3 SINE MIR -44 164 30 258 116 0 0 chr11 83805191 83805234 -64978238 + (GCTG)n Simple_repeat Simple_repeat 1 43 0 572 255 166 43 chr11 83805782 83806221 -64977251 - LTR33 LTR ERVL -7 514 22 261 336 0 0 chr11 83807076 83807180 -64976292 + MIR SINE MIR 38 141 -121 649 286 86 4 chr11 83807372 83807606 -64975866 + MIR SINE MIR 8 260 -2 180 326 118 14 chr11 83808225 83808369 -64975103 - MIR SINE MIR -24 238 80 515 208 161 0 chr11 83808577 83808707 -64974765 - MER103 DNA DNA -1 165 15 299 272 33 38 chr11 83809303 83809487 -64973985 + L2 LINE L2 2335 2517 -797 643 301 57 0 chr11 83809495 83809704 -64973768 + MIR SINE MIR 8 228 -34 515 302 94 14 chr11 83809751 83810122 -64973350 + L2 LINE L2 2555 2955 -359 188 164 0 73 chr11 83810210 83810265 -64973207 + L2 LINE L2 3172 3222 -91 1087 168 0 11 chr11 83810352 83810535 -64972937 - FRAM SINE Alu 0 180 1 308 304 9 0 chr11 83810548 83810660 -64972812 - MIR SINE MIR -111 151 39 22 0 0 0 chr11 83811171 83811193 -64972279 + AT_rich Low_complexity Low_complexity 1 22 0 369 286 58 21 chr11 83811659 83811848 -64971624 - MIR SINE MIR -17 245 50 1791 222 76 8 chr11 83811925 83812398 -64971074 - MLT1D LTR MaLR 0 505 1 261 0 0 0 chr11 83812622 83812651 -64970821 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 220 296 52 26 chr11 83812765 83812880 -64970592 - L2 LINE L2 -221 3051 2934 228 154 0 0 chr11 83814694 83814746 -64968726 + (TA)n Simple_repeat Simple_repeat 1 52 0 225 247 0 0 chr11 83815731 83815812 -64967660 + (TCCA)n Simple_repeat Simple_repeat 1 81 0 519 216 0 0 chr11 83815825 83816079 -64967393 + (TCCA)n Simple_repeat Simple_repeat 1 254 0 202 309 74 0 chr11 83816079 83816160 -64967312 - L2 LINE L2 0 3313 3227 348 298 66 11 chr11 83816496 83816712 -64966760 - MIR SINE MIR -8 254 16 292 316 59 56 chr11 83817992 83818424 -64965048 - L1MC/D LINE L1 -748 5398 5189 180 0 0 0 chr11 83818474 83818494 -64964978 + (T)n Simple_repeat Simple_repeat 1 20 0 23 33 0 0 chr11 83818762 83818792 -64964680 + AT_rich Low_complexity Low_complexity 1 30 0 193 309 103 10 chr11 83819222 83819319 -64964153 - MIR SINE MIR -60 148 43 232 188 16 78 chr11 83819335 83819399 -64964073 + MIR SINE MIR 20 79 -183 871 239 55 14 chr11 83820491 83820709 -64962763 - MIR SINE MIR -24 238 12 225 233 17 17 chr11 83820901 83820961 -64962511 - MIR SINE MIR -79 129 70 181 239 133 26 chr11 83821059 83821172 -64962300 - L2 LINE L2 -8 3264 3140 206 192 19 0 chr11 83821838 83821890 -64961582 + GA-rich Low_complexity Low_complexity 2 54 0 237 306 58 64 chr11 83822056 83822229 -64961243 - MIR SINE MIR -69 193 22 231 226 19 19 chr11 83823215 83823268 -64960204 + Charlie5 DNA MER1_type 9 61 -2551 233 354 109 11 chr11 83823286 83823461 -64960011 + L2 LINE L2 2725 2916 -398 439 206 21 0 chr11 83823610 83823707 -64959765 + L2 LINE L2 3134 3232 -40 273 324 110 11 chr11 83824461 83824643 -64958829 + MIR SINE MIR 1 200 -62 231 283 11 43 chr11 83824995 83825087 -64958385 + L2 LINE L2 3180 3268 -4 528 267 19 58 chr11 83825637 83825843 -64957629 - MIR SINE MIR -35 227 30 575 298 97 43 chr11 83825934 83826213 -64957259 - MER102a DNA MER1_type -3 327 34 276 302 47 9 chr11 83826287 83826393 -64957079 + MARNA DNA Mariner 111 220 -366 682 255 53 14 chr11 83826429 83826637 -64956835 - MIR SINE MIR -46 216 1 199 281 56 34 chr11 83827090 83827179 -64956293 + MIR SINE MIR 45 135 -73 658 271 38 5 chr11 83827614 83827824 -64955648 - LTR33 LTR ERVL 0 521 305 460 208 227 45 chr11 83829691 83829960 -64953512 - L1MC5 LINE L1 -32 7929 7612 1709 185 21 0 chr11 83830004 83830290 -64953182 - AluJo SINE Alu -20 292 1 21 0 0 0 chr11 83830351 83830372 -64953100 + AT_rich Low_complexity Low_complexity 1 21 0 326 281 0 0 chr11 83830373 83830462 -64953010 + L2 LINE L2 3181 3269 -3 619 167 17 23 chr11 83830510 83830684 -64952788 + GA-rich Low_complexity Low_complexity 4 176 0 278 281 7 67 chr11 83832611 83832746 -64950726 - MIR SINE MIR -50 212 86 450 286 143 0 chr11 83832849 83833052 -64950420 - MIR SINE MIR -28 234 3 307 239 23 45 chr11 83833453 83833541 -64949931 + MIR SINE MIR 63 148 -60 2374 128 112 49 chr11 83833585 83833722 -64949750 - MER101 LTR ERV1 0 474 347 2240 103 0 0 chr11 83833722 83834024 -64949448 - AluSx SINE Alu 0 302 1 2374 128 112 49 chr11 83834024 83834331 -64949141 - MER101 LTR ERV1 -127 347 1 308 292 66 22 chr11 83834577 83834714 -64948758 - L3 LINE CR1 -249 1328 1186 232 189 19 0 chr11 83835073 83835126 -64948346 - MIR SINE MIR -12 250 197 916 250 14 5 chr11 83835270 83835490 -64947982 - MER58A DNA MER1_type 0 224 3 277 250 10 20 chr11 83836287 83836387 -64947085 + (TCTCTG)n Simple_repeat Simple_repeat 2 100 0 209 345 0 12 chr11 83836459 83836543 -64946929 + CT-rich Low_complexity Low_complexity 2 84 0 203 296 139 17 chr11 83837165 83837280 -64946192 - MIR SINE MIR -14 248 120 2102 117 3 3 chr11 83837532 83837851 -64945621 - AluSx SINE Alu 0 319 1 920 247 44 91 chr11 83837851 83838535 -64944937 - L2 LINE L2 -10 3303 2651 1783 177 0 32 chr11 83838535 83838846 -64944626 + AluJo SINE Alu 1 301 -11 920 247 44 91 chr11 83838846 83838932 -64944540 - L2 LINE L2 -662 2651 2562 364 310 39 8 chr11 83839142 83839271 -64944201 + L2 LINE L2 3122 3254 -18 527 289 84 30 chr11 83839516 83839779 -64943693 + L2 LINE L2 3037 3313 0 319 219 198 0 chr11 83840205 83840301 -64943171 + MIR3 SINE MIR 85 199 -9 470 234 65 7 chr11 83840324 83840475 -64942997 - MIR SINE MIR -1 261 99 1032 211 214 19 chr11 83840483 83840796 -64942676 - MLT1B LTR MaLR -15 375 2 2893 13 0 0 chr11 83841196 83841507 -64941965 + AluYb8 SINE Alu 1 311 -7 395 276 24 24 chr11 83841815 83841942 -64941530 - MIR SINE MIR -52 210 84 366 263 11 0 chr11 83842238 83842333 -64941139 + MIR SINE MIR 107 202 -60 1839 196 23 9 chr11 83842333 83842709 -64940763 - MLT1A2 LTR MaLR 0 450 1 217 214 0 0 chr11 83842711 83842753 -64940719 + MIR SINE MIR 200 241 -21 194 152 0 43 chr11 83842867 83842913 -64940559 + GA-rich Low_complexity Low_complexity 2 45 0 322 296 52 35 chr11 83843095 83843267 -64940205 + MIR3 SINE MIR 15 189 -19 294 290 28 9 chr11 83843282 83843389 -64940083 + MIR SINE MIR 12 120 -142 2286 110 3 0 chr11 83845301 83845610 -64937862 - AluSx SINE Alu -2 310 1 332 229 71 0 chr11 83845616 83845686 -64937786 - L2 LINE L2 0 3272 3198 2138 195 74 4 chr11 83845806 83846278 -64937194 + MLT1D LTR MaLR 1 505 0 704 240 80 18 chr11 83846611 83846836 -64936636 + MIR SINE MIR 12 250 -12 187 237 0 0 chr11 83846803 83846841 -64936631 + L2 LINE L2 3263 3300 -13 * 506 327 42 39 chr11 83847951 83848211 -64935261 - MIR SINE MIR 0 262 2 296 318 39 23 chr11 83848313 83848442 -64935030 - L2 LINE L2 -1 3312 3182 233 265 20 41 chr11 83848438 83848536 -64934936 - L2 LINE L2 -553 2761 2666 * 287 266 117 0 chr11 83848686 83848780 -64934692 + L2 LINE L2 3133 3237 -35 234 0 0 0 chr11 83849223 83849249 -64934223 + (TG)n Simple_repeat Simple_repeat 2 27 0 261 139 0 0 chr11 83849881 83849924 -64933548 + (TCCA)n Simple_repeat Simple_repeat 1 43 0 2671 57 0 0 chr11 83850291 83850605 -64932867 + AluYb8 SINE Alu 3 316 -2 227 237 0 0 chr11 83851581 83851640 -64931832 - MIR SINE MIR -113 149 91 318 289 126 0 chr11 83851940 83852075 -64931397 - MIR SINE MIR -19 243 92 347 208 78 0 chr11 83852386 83852463 -64931009 - MER5A DNA MER1_type -98 91 9 354 255 105 39 chr11 83852637 83852790 -64930682 - MIR SINE MIR -80 182 20 392 123 14 55 chr11 83854195 83854268 -64929204 - L2 LINE L2 0 3313 3244 310 287 7 73 chr11 83854789 83854939 -64928533 - MIR SINE MIR -14 248 109 521 274 29 66 chr11 83854941 83855182 -64928290 + MIR SINE MIR 21 252 -10 877 198 6 6 chr11 83855616 83855788 -64927684 - MER5B DNA MER1_type -6 172 1 246 209 115 7 chr11 83856410 83856517 -64926955 - MIR SINE MIR -100 162 42 551 284 28 28 chr11 83856808 83857019 -64926453 + MIR SINE MIR 48 258 -4 1898 200 105 30 chr11 83857090 83857556 -64925916 - MLT1D LTR MaLR -4 501 1 330 293 74 28 chr11 83857564 83857779 -64925693 - L2 LINE L2 -214 3058 2834 327 266 22 36 chr11 83858539 83858678 -64924794 + CT-rich Low_complexity Low_complexity 2 138 0 327 225 75 0 chr11 83858707 83858787 -64924685 + MIR SINE MIR 67 152 -110 220 139 95 0 chr11 83859502 83859555 -64923917 - MIR SINE MIR -71 137 77 405 307 21 0 chr11 83860160 83860300 -64923172 - L2 LINE L2 -2 3311 3169 430 265 53 8 chr11 83861635 83861767 -64921705 - MIR SINE MIR -55 207 70 327 336 29 22 chr11 83861997 83862134 -64921338 - MIR3 SINE MIR -61 147 10 278 383 119 14 chr11 83863146 83863431 -64920041 - L2 LINE L2 -42 3230 2916 308 294 77 7 chr11 83863500 83863643 -64919829 + MER103 DNA DNA 1 153 -13 515 287 7 22 chr11 83864436 83864572 -64918900 + MIR SINE MIR 21 154 -108 290 335 151 25 chr11 83864669 83864988 -64918484 + L3 LINE CR1 868 1226 -351 315 220 17 0 chr11 83865016 83865075 -64918397 + L2 LINE L2 3200 3259 -13 348 64 0 0 chr11 83865075 83865122 -64918350 + (TGGA)n Simple_repeat Simple_repeat 1 47 0 188 314 181 0 chr11 83865128 83865233 -64918239 + MIR SINE MIR 25 148 -114 270 313 210 20 chr11 83865379 83865574 -64917898 + L3 LINE CR1 1268 1499 -78 197 222 37 37 chr11 83865645 83865699 -64917773 + MIR SINE MIR 101 154 -108 310 287 134 51 chr11 83865771 83865987 -64917485 + Charlie8 DNA MER1_type 1 234 -2183 544 290 97 0 chr11 83866107 83866283 -64917189 + MIR SINE MIR 2 194 -68 342 333 27 54 chr11 83866898 83867084 -64916388 - MIR SINE MIR -80 182 2 417 282 73 0 chr11 83867543 83867667 -64915805 + MIR SINE MIR 52 184 -78 285 259 35 0 chr11 83867714 83867799 -64915673 - MIR SINE MIR -57 205 118 1011 337 96 7 chr11 83867993 83868123 -64915349 + L2 LINE L2 2406 2523 -790 859 216 88 16 chr11 83868123 83868317 -64915155 - MER63A DNA MER1_type -2 208 1 1011 337 96 7 chr11 83868317 83868943 -64914529 + L2 LINE L2 2523 3221 -92 326 278 132 63 chr11 83869417 83869622 -64913850 + MIR SINE MIR 41 259 -3 316 296 31 0 chr11 83870030 83870128 -64913344 + MIR SINE MIR 45 145 -63 189 0 0 0 chr11 83870685 83870706 -64912766 + (A)n Simple_repeat Simple_repeat 1 21 0 327 276 24 32 chr11 83870709 83870832 -64912640 + MIR SINE MIR 53 174 -88 223 277 0 85 chr11 83872783 83872877 -64910595 - MIR SINE MIR -120 142 57 298 56 0 0 chr11 83873619 83873655 -64909817 - MLT2C1 LTR ERVL -10 387 352 356 228 76 0 chr11 83873662 83873741 -64909731 - L1MC4 LINE L1 -1340 6702 6618 1182 189 55 64 chr11 83873746 83873832 -64909640 - MER2 DNA MER2_type 0 344 259 1492 171 36 46 chr11 83873832 83874136 -64909336 + AluJo SINE Alu 1 301 -11 1182 189 55 64 chr11 83874136 83874393 -64909079 - MER2 DNA MER2_type -85 259 4 227 172 0 35 chr11 83874413 83874471 -64909001 + (TATG)n Simple_repeat Simple_repeat 1 56 0 1804 186 37 14 chr11 83874471 83874830 -64908642 - MLT2C1 LTR ERVL -41 479 1 646 297 17 6 chr11 83875932 83876107 -64907365 - MER45A DNA AcHobo 0 178 2 195 286 50 42 chr11 83876110 83876229 -64907243 - L2 LINE L2 -261 3052 2933 216 0 0 0 chr11 83876694 83876718 -64906754 + (T)n Simple_repeat Simple_repeat 1 24 0 438 331 13 0 chr11 83877137 83877294 -64906178 - MIR3 SINE MIR -8 200 42 197 302 0 0 chr11 83877329 83877382 -64906090 + MIR SINE MIR 95 147 -115 332 219 20 0 chr11 83877443 83877525 -64905947 + MIR SINE MIR 61 147 -61 186 208 0 0 chr11 83877596 83877644 -64905828 + (TTA)n Simple_repeat Simple_repeat 3 50 0 538 312 27 16 chr11 83877691 83877877 -64905595 + MIR SINE MIR 1 188 -74 678 298 51 21 chr11 83879121 83879356 -64904116 + MIR SINE MIR 3 244 -18 2011 181 34 41 chr11 83879515 83879930 -64903542 - MER63B DNA MER1_type -20 416 5 336 267 0 12 chr11 83879950 83880036 -64903436 - L3 LINE CR1 -155 1422 1338 337 296 118 21 chr11 83880659 83880845 -64902627 + MIR SINE MIR 32 235 -27 406 244 100 84 chr11 83882270 83882374 -64901098 + MER112 DNA MER1_type 1 102 -158 369 83 0 266 chr11 83882374 83882483 -64900989 - MADE1 DNA Mariner 0 80 1 406 244 100 84 chr11 83882483 83882628 -64900844 + MER112 DNA MER1_type 102 254 -6 545 238 137 12 chr11 83882636 83882804 -64900668 - MER5A DNA MER1_type 0 189 1 842 233 17 6 chr11 83883404 83883580 -64899892 + MER5B DNA MER1_type 1 178 0 754 287 16 44 chr11 83884055 83884306 -64899166 - MIR SINE MIR -18 244 1 292 296 0 0 chr11 83885640 83885711 -64897761 - L2 LINE L2 -12 3260 3190 749 261 26 101 chr11 83885727 83885995 -64897477 + MIR SINE MIR 5 252 -10 332 341 102 0 chr11 83886024 83886200 -64897272 - L2 LINE L2 -14 3299 3106 30 27 0 0 chr11 83887399 83887436 -64896036 + AT_rich Low_complexity Low_complexity 1 37 0 194 284 92 92 chr11 83888176 83888405 -64895067 - L2 LINE L2 -5 3267 3039 194 250 54 0 chr11 83888582 83888638 -64894834 + MIR SINE MIR 89 147 -61 485 273 201 8 chr11 83889084 83889356 -64894116 + Charlie8 DNA MER1_type 2 1425 -992 398 295 33 16 chr11 83889472 83889594 -64893878 - MIR SINE MIR -70 192 69 340 293 21 36 chr11 83889589 83889729 -64893743 + MIR3 SINE MIR 9 146 -62 * 1773 194 64 5 chr11 83889780 83890172 -64893300 + Charlie4a DNA MER1_type 94 508 0 248 239 131 0 chr11 83890562 83890655 -64892817 - MIR SINE MIR -16 192 81 696 301 31 28 chr11 83890766 83891091 -64892381 - L2 LINE L2 -661 2653 2328 447 217 186 12 chr11 83891129 83891290 -64892182 + MIR SINE MIR 59 247 -15 398 333 76 43 chr11 83891531 83891741 -64891731 + MIR SINE MIR 36 252 -10 239 304 36 27 chr11 83892564 83892676 -64890796 + L2 LINE L2 2638 2750 -564 521 236 98 13 chr11 83893057 83893228 -64890244 - MIR SINE MIR -62 146 9 1000 252 37 12 chr11 83894630 83894876 -64888596 + MIR SINE MIR 6 257 -5 571 266 169 14 chr11 83894900 83895107 -64888365 - MIR SINE MIR 0 262 24 32 0 0 0 chr11 83896206 83896238 -64887234 + AT_rich Low_complexity Low_complexity 1 32 0 790 298 108 48 chr11 83896245 83896344 -64887128 - L2 LINE L2 -8 3305 3213 2422 135 78 8 chr11 83896344 83896744 -64886728 - MSTA LTR MaLR 0 428 1 790 298 108 48 chr11 83896744 83897453 -64886019 - L2 LINE L2 -100 3213 2443 638 313 170 25 chr11 83897536 83898053 -64885419 + L1MC4a LINE L1 5263 5857 -1951 208 266 0 38 chr11 83898264 83898343 -64885129 - L2 LINE L2 -177 3095 3020 206 261 19 0 chr11 83898981 83899059 -64884413 + MIR SINE MIR 30 108 -113 405 58 0 0 chr11 83899243 83899295 -64884177 + (TG)n Simple_repeat Simple_repeat 1 52 0 234 220 83 0 chr11 83899467 83899576 -64883896 - MER113 DNA MER1_type? -384 137 20 269 338 169 7 chr11 83899583 83899719 -64883753 + MIR SINE MIR 87 244 -18 2595 14 0 0 chr11 83899806 83900098 -64883374 - AluYb8 SINE Alu 0 318 27 211 325 20 20 chr11 83900799 83900898 -64882574 - MIR SINE MIR -60 148 49 275 225 90 22 chr11 83901242 83901331 -64882141 + MIR3 SINE MIR 15 109 -99 208 319 69 0 chr11 83901396 83901468 -64882004 - L2 LINE L2 -54 3218 3142 295 332 86 14 chr11 83901548 83901690 -64881782 - MIR SINE MIR -65 143 37 378 0 0 0 chr11 83902425 83902467 -64881005 + (TG)n Simple_repeat Simple_repeat 2 43 0 2106 118 0 0 chr11 83903500 83903796 -64879676 - AluSq SINE Alu -17 296 1 658 324 23 0 chr11 83903858 83904031 -64879441 + MER91A DNA MER1_type 20 196 0 229 277 0 15 chr11 83904133 83904198 -64879274 + (TAG)n Simple_repeat Simple_repeat 1 64 0 190 279 0 0 chr11 83904746 83904789 -64878683 - L2 LINE L2 -11 3261 3219 1342 164 0 9 chr11 83904822 83905047 -64878425 - AluJo SINE Alu 0 312 90 212 333 29 20 chr11 83905092 83905194 -64878278 - MIR SINE MIR -68 140 38 220 400 0 0 chr11 83905304 83905384 -64878088 + L2 LINE L2 3102 3181 -91 762 246 42 50 chr11 83905437 83905697 -64877775 - MIR SINE MIR -3 259 2 208 420 36 0 chr11 83907581 83907693 -64875779 + L3 LINE CR1 1403 1518 -59 271 235 174 40 chr11 83907902 83908051 -64875421 + MIR SINE MIR 38 206 -56 872 121 0 0 chr11 83908266 83908390 -64875082 + AluSq/x SINE Alu 2 125 -187 1083 261 124 23 chr11 83908640 83909035 -64874437 - LTR16A LTR ERVL 0 450 16 399 319 32 22 chr11 83909043 83909228 -64874244 - MER117 DNA MER1_type -10 187 1 295 205 16 126 chr11 83910609 83910736 -64872736 + MIR SINE MIR 41 132 -76 206 243 77 142 chr11 83911606 83911681 -64871791 - MIR SINE MIR -54 208 130 1970 108 0 56 chr11 83911681 83911987 -64871485 - AluSq SINE Alu -20 293 5 206 243 77 142 chr11 83911987 83912124 -64871348 - MIR SINE MIR -132 130 16 7690 181 26 31 chr11 83912299 83913099 -64870373 - L1MB7 LINE L1 -9 6175 5372 2313 101 0 7 chr11 83913099 83913405 -64870067 - AluSc SINE Alu -5 304 1 7690 181 26 31 chr11 83913405 83915110 -64868362 - L1MB7 LINE L1 -812 5372 3680 417 20 0 0 chr11 83915110 83915160 -64868312 + (TG)n Simple_repeat Simple_repeat 1 50 0 7690 181 26 31 chr11 83915160 83915271 -64868201 - L1MB7 LINE L1 -2504 3680 3570 207 231 0 0 chr11 83915964 83916016 -64867456 - L2 LINE L2 0 3313 3262 563 179 89 0 chr11 83916183 83916306 -64867166 - L1M4 LINE L1 -664 5514 5381 207 280 53 13 chr11 83916831 83916906 -64866566 + MIR SINE MIR 111 188 -74 471 261 57 13 chr11 83916995 83917152 -64866320 + MIR SINE MIR 35 198 -64 1223 188 34 133 chr11 83918177 83918561 -64864911 - MLT1A1 LTR MaLR -19 346 1 220 299 84 9 chr11 83918871 83918978 -64864494 - L2 LINE L2 -4 3309 3195 194 344 0 0 chr11 83920606 83920667 -64862805 - MIR SINE MIR -115 147 87 706 266 34 17 chr11 83920821 83921058 -64862414 + MIR SINE MIR 15 255 -7 426 286 6 77 chr11 83921973 83922155 -64861317 - MER91A DNA MER1_type -23 173 5 276 321 12 0 chr11 83922246 83922327 -64861145 + MIR3 SINE MIR 114 195 -13 312 143 0 0 chr11 83923079 83923135 -64860337 + (CA)n Simple_repeat Simple_repeat 2 57 0 193 260 0 0 chr11 83923214 83923264 -64860208 - MIR3 SINE MIR -6 202 153 191 247 110 0 chr11 83923447 83923520 -64859952 - MIR SINE MIR -78 130 50 180 270 164 53 chr11 83924704 83924856 -64858616 + MIR SINE MIR 46 214 -48 511 147 42 21 chr11 83925035 83925130 -64858342 + MER104 DNA Tc2 5 101 -79 555 231 8 8 chr11 83925184 83925318 -64858154 - MIR SINE MIR -109 153 20 373 309 192 10 chr11 83925432 83925739 -64857733 - L2 LINE L2 -20 3252 2890 1068 207 13 71 chr11 83925748 83926057 -64857415 + MER33 DNA MER1_type 2 292 -32 220 303 40 0 chr11 83926318 83926394 -64857078 + MIR SINE MIR 125 203 -59 193 273 0 0 chr11 83926426 83926470 -64857002 + L2 LINE L2 3211 3254 -18 200 246 77 0 chr11 83926699 83926764 -64856708 + MIR SINE MIR 31 100 -108 295 333 34 20 chr11 83927566 83927713 -64855759 - L2 LINE L2 -176 3096 2948 230 183 141 14 chr11 83928104 83928175 -64855297 - MER20B DNA MER1_type -676 107 28 3124 201 20 33 chr11 83929189 83929850 -64853622 + MER82 DNA MER2_type 1 652 -1 228 293 13 13 chr11 83929879 83929954 -64853518 - MIR3 SINE MIR -53 155 81 1039 194 82 10 chr11 83929981 83930187 -64853285 + MER58A DNA MER1_type 4 224 0 386 264 14 116 chr11 83930605 83930889 -64852583 - MIR SINE MIR -3 259 5 469 337 51 15 chr11 83931059 83931391 -64852081 - L2 LINE L2 -659 2655 2312 390 212 9 88 chr11 83931976 83932089 -64851383 + L2 LINE L2 3200 3303 -10 442 293 85 63 chr11 83932132 83932450 -64851022 - L2 LINE L2 0 3272 2948 1130 170 162 0 chr11 83932755 83933033 -64850439 - MER33 DNA MER1_type -8 316 1 314 292 26 45 chr11 83933513 83933667 -64849805 - MER5B DNA MER1_type -2 176 26 728 220 103 73 chr11 83934332 83934564 -64848908 - MER8 DNA MER2_type 0 239 1 397 266 121 30 chr11 83935453 83935652 -64847820 - MIR SINE MIR -10 252 36 286 254 0 0 chr11 83936110 83936173 -64847299 - MIR SINE MIR -81 181 119 267 73 0 24 chr11 83936846 83936887 -64846585 - L1MB8 LINE L1 -110 6068 6029 338 333 31 19 chr11 83937827 83937986 -64845486 + MIR SINE MIR 88 248 -14 439 266 137 7 chr11 83938013 83938152 -64845320 + MER96 DNA MER1_type? 19 175 0 215 276 92 11 chr11 83938536 83938623 -64844849 + L2 LINE L2 3216 3309 -4 1022 122 8 0 chr11 83938635 83938898 -64844574 + (TGGA)n Simple_repeat Simple_repeat 1 265 0 281 296 83 9 chr11 83938915 83939023 -64844449 + L2 LINE L2 3187 3302 -11 204 333 29 29 chr11 83939369 83939474 -64843998 - MIR3 SINE MIR -91 117 13 329 265 61 23 chr11 83940050 83940182 -64843290 - MIR SINE MIR -61 201 65 238 211 0 56 chr11 83940993 83941064 -64842408 + L1MC5 LINE L1 7848 7914 -47 264 333 17 8 chr11 83941861 83941978 -64841494 + MIR SINE MIR 31 148 -114 1374 243 125 11 chr11 83942006 83942454 -64841018 - LTR33 LTR ERVL -22 499 1 21 0 0 0 chr11 83942787 83942808 -64840664 + AT_rich Low_complexity Low_complexity 1 21 0 1085 302 85 17 chr11 83943926 83944505 -64838967 - L1MC4a LINE L1 -1876 5932 5315 239 229 48 36 chr11 83945271 83945354 -64838118 + MIR SINE MIR 83 166 -96 278 256 133 11 chr11 83945411 83945501 -64837971 - MLT1H LTR MaLR -16 533 433 292 248 95 0 chr11 83945647 83945752 -64837720 - MLT1H LTR MaLR -433 116 2 2272 86 0 13 chr11 83945823 83946126 -64837346 + AluSg SINE Alu 1 299 -11 1076 274 75 69 chr11 83946278 83947239 -64836233 - L1MEd LINE L1 -1214 1276 229 226 169 84 84 chr11 83947337 83947420 -64836052 - L1MEd LINE L1 -6035 84 2 203 277 0 31 chr11 83947916 83947981 -64835491 + MIR SINE MIR 30 92 -116 2226 117 0 3 chr11 83948074 83948373 -64835099 + AluSx SINE Alu 1 298 -14 501 297 103 0 chr11 83948477 83948672 -64834800 - MIR SINE MIR -16 246 32 222 260 0 0 chr11 83948851 83948901 -64834571 + L2 LINE L2 3210 3259 -13 694 257 43 36 chr11 83948976 83949229 -64834243 + MIR SINE MIR 8 262 0 204 125 0 0 chr11 83950899 83950931 -64832541 + (T)n Simple_repeat Simple_repeat 1 32 0 882 98 16 8 chr11 83951111 83951233 -64832239 - AluSq/x SINE Alu -189 123 1 350 322 45 11 chr11 83951369 83951546 -64831926 - L1ME3A LINE L1 0 6170 5988 1026 277 98 24 chr11 83951654 83952033 -64831439 - L1ME3A LINE L1 -214 5948 5537 264 314 83 0 chr11 83952075 83952196 -64831276 + MIR SINE MIR 117 247 -15 222 128 0 0 chr11 83952325 83952364 -64831108 + (TC)n Simple_repeat Simple_repeat 2 40 0 2372 110 0 0 chr11 83952400 83952710 -64830762 - AluSx SINE Alu -2 310 1 510 298 13 6 chr11 83952756 83952914 -64830558 - MIR SINE MIR -44 218 60 239 159 0 23 chr11 83953354 83953398 -64830074 - L2 LINE L2 -210 3062 3020 21 0 0 0 chr11 83953709 83953730 -64829742 + AT_rich Low_complexity Low_complexity 1 21 0 257 89 22 0 chr11 83953895 83953940 -64829532 + (CA)n Simple_repeat Simple_repeat 1 46 0 867 213 16 11 chr11 83954128 83954316 -64829156 + MER5A DNA MER1_type 1 189 0 549 203 183 0 chr11 83954329 83954482 -64828990 + MER5A DNA MER1_type 9 189 0 1544 234 73 44 chr11 83955495 83955991 -64827481 + L1ME4a LINE L1 5574 6083 -38 208 238 0 0 chr11 83956625 83956667 -64826805 + (CA)n Simple_repeat Simple_repeat 1 42 0 245 293 38 19 chr11 83956731 83956837 -64826635 - MIR SINE MIR -39 223 116 290 270 0 0 chr11 83957797 83957860 -64825612 + MIR SINE MIR 66 128 -134 639 230 64 43 chr11 83958158 83958345 -64825127 - MIR SINE MIR -71 191 1 226 188 127 30 chr11 83958393 83958496 -64824976 - MIR SINE MIR -57 205 85 277 339 108 0 chr11 83958551 83958681 -64824791 + MIR SINE MIR 117 260 -2 382 259 121 35 chr11 83958832 83959006 -64824466 + MIR SINE MIR 47 235 -27 1834 168 3 10 chr11 83959311 83959624 -64823848 - AluSx SINE Alu 0 312 1 2434 144 144 9 chr11 83959644 83959683 -64823789 - MLT2B1 LTR ERVL 0 520 488 213 39 0 0 chr11 83959683 83959709 -64823763 + (GA)n Simple_repeat Simple_repeat 1 26 0 2434 144 144 9 chr11 83959709 83960127 -64823345 - MLT2B1 LTR ERVL -32 488 1 2333 103 0 0 chr11 83960672 83960973 -64822499 - AluSx SINE Alu -11 301 1 490 304 14 0 chr11 83961232 83961370 -64822102 - LTR67 LTR ERVL -4 553 414 2204 82 0 7 chr11 83963044 83963337 -64820135 - AluY SINE Alu -20 291 1 482 304 65 16 chr11 83964177 83964361 -64819111 - MIR SINE MIR -50 212 20 308 299 194 51 chr11 83965060 83965277 -64818195 - L2 LINE L2 -1 3271 3024 208 326 174 0 chr11 83966253 83966339 -64817133 + MIR SINE MIR 18 118 -90 1973 134 6 13 chr11 83966347 83966687 -64816785 - AluSx SINE Alu 0 312 1 410 288 38 8 chr11 83966811 83966943 -64816529 - MIR SINE MIR -77 185 50 291 343 83 0 chr11 83966931 83967039 -64816433 + L2 LINE L2 3194 3310 -3 * 24 0 0 0 chr11 83967078 83967102 -64816370 + AT_rich Low_complexity Low_complexity 1 24 0 299 212 0 26 chr11 83967102 83967187 -64816285 - L1P2 LINE L1 -675 5446 5379 357 297 88 42 chr11 83967820 83968012 -64815460 - MIR SINE MIR -42 220 20 264 107 0 36 chr11 83968431 83968487 -64814985 + FAM SINE Alu 126 179 0 898 182 0 17 chr11 83968613 83968789 -64814683 + AluJo SINE Alu 120 292 -20 776 288 74 61 chr11 83968814 83969329 -64814143 - L2 LINE L2 0 3313 2783 2133 161 44 10 chr11 83969474 83969884 -64813588 + L1MC3 LINE L1 7342 7765 -20 1197 275 83 22 chr11 83971186 83971677 -64811795 - LTR33A LTR ERVL -2 521 1 21 0 0 0 chr11 83972746 83972767 -64810705 + AT_rich Low_complexity Low_complexity 1 21 0 900 166 6 30 chr11 83972838 83973007 -64810465 + AluJo SINE Alu 1 165 -147 747 191 60 38 chr11 83973014 83973197 -64810275 + AluSg/x SINE Alu 104 290 -22 1587 207 62 51 chr11 83973400 83973674 -64809798 - MLT1C LTR MaLR -8 459 177 1714 133 18 4 chr11 83973674 83973952 -64809520 - AluSp SINE Alu -31 282 1 1587 207 62 51 chr11 83973952 83974131 -64809341 - MLT1C LTR MaLR -290 177 1 304 272 228 6 chr11 83974533 83974691 -64808781 - MLT1I LTR MaLR -118 291 99 1551 101 35 0 chr11 83975473 83975701 -64807771 - L1PA10 LINE L1 -5 6163 5928 4943 81 13 3 chr11 83975701 83976399 -64807073 + L1PA10 LINE L1 5233 5936 -232 185 256 0 23 chr11 83977379 83977422 -64806050 - L2 LINE L2 -16 3256 3215 222 338 0 40 chr11 83977844 83977918 -64805554 - L2 LINE L2 -86 3186 3116 376 285 102 7 chr11 83978136 83978273 -64805199 - MIR SINE MIR -106 156 7 345 359 36 21 chr11 83978967 83979159 -64804313 + MIR SINE MIR 48 242 -20 218 361 41 41 chr11 83979596 83979693 -64803779 + L2 LINE L2 3116 3212 -60 210 118 0 0 chr11 83979708 83979742 -64803730 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 2070 100 24 3 chr11 83980449 83980740 -64802732 + AluSq SINE Alu 1 297 -16 455 281 41 27 chr11 83981370 83981516 -64801956 - MIR3 SINE MIR -3 205 58 1929 187 31 18 chr11 83981601 83981992 -64801480 - MSTD LTR MaLR 0 396 1 281 292 124 77 chr11 83982160 83982393 -64801079 - L2 LINE L2 -27 3245 3002 787 276 61 76 chr11 83983475 83983805 -64799667 - MLT1I LTR MaLR -14 395 71 242 307 57 0 chr11 83983856 83983944 -64799528 - MIR SINE MIR -111 151 59 315 355 0 9 chr11 83983971 83984078 -64799394 - L2 LINE L2 0 3313 3208 2036 116 0 20 chr11 83984170 83984473 -64798999 + AluSq SINE Alu 1 297 -16 269 252 107 29 chr11 83984525 83984628 -64798844 - MIR SINE MIR -38 224 114 477 289 70 50 chr11 83984985 83985186 -64798286 + L2 LINE L2 3093 3297 -16 193 369 47 20 chr11 83985611 83985760 -64797712 + L3 LINE CR1 624 776 -801 610 203 39 0 chr11 83986372 83986500 -64796972 + L1M4 LINE L1 4869 5001 -1145 1869 195 128 13 chr11 83986606 83987068 -64796404 - Charlie1b DNA MER1_type -5 518 4 341 364 14 21 chr11 83987220 83987360 -64796112 + L2 LINE L2 2926 3064 -208 205 133 0 0 chr11 83987724 83987754 -64795718 - MIR SINE MIR -19 243 214 227 235 0 20 chr11 83987829 83987880 -64795592 - MIR SINE MIR -167 95 46 182 229 14 114 chr11 83988106 83988176 -64795296 - L2 LINE L2 -76 3237 3175 339 288 139 45 chr11 83988441 83988643 -64794829 - MIR SINE MIR -6 256 38 680 298 70 0 chr11 83989696 83989924 -64793548 - MIR SINE MIR -6 256 13 534 191 0 11 chr11 83989994 83990088 -64793384 - MIR SINE MIR -63 199 107 224 271 31 42 chr11 83990476 83990572 -64792900 + L2 LINE L2 2720 2814 -500 207 0 0 0 chr11 83990578 83990601 -64792871 + (T)n Simple_repeat Simple_repeat 1 23 0 2122 121 0 3 chr11 83990736 83991042 -64792430 - AluJb SINE Alu -7 305 1 675 264 21 51 chr11 83991085 83991320 -64792152 + MIR SINE MIR 35 262 0 264 298 94 12 chr11 83991363 83991534 -64791938 + L2 LINE L2 2917 3101 -171 2484 77 57 0 chr11 83991783 83992119 -64791353 - THE1A LTR MaLR 0 355 1 2586 207 65 5 chr11 83992868 83993481 -64789991 + L1MD2 LINE L1 5710 6359 0 793 295 60 26 chr11 83993716 83994096 -64789376 - L1ME LINE L1 -354 5816 5424 247 180 66 33 chr11 83994174 83994235 -64789237 + L2 LINE L2 3250 3312 -1 1623 131 29 131 chr11 83994328 83994741 -64788731 - L1MB8 LINE L1 -5 6173 5803 445 121 0 0 chr11 83994774 83994838 -64788634 + Tigger7 DNA MER2_type 2326 2389 -198 293 295 0 0 chr11 83994838 83994899 -64788573 - MER2 DNA MER2_type 0 345 285 514 206 10 0 chr11 83994916 83995013 -64788459 - MER2 DNA MER2_type -247 98 1 * 1143 134 65 0 chr11 83995013 83995195 -64788277 + Tigger7 DNA MER2_type 2288 2481 -6 1639 167 62 15 chr11 83995200 83995524 -64787948 - L1M4 LINE L1 -379 5805 5467 567 277 87 16 chr11 83995529 83995713 -64787759 + MIR SINE MIR 25 221 -41 426 251 212 49 chr11 83996484 83996871 -64786601 + L2 LINE L2 2325 2774 -540 280 383 57 10 chr11 83996883 83997092 -64786380 + L2 LINE L2 3089 3307 -6 260 275 65 58 chr11 83997141 83997292 -64786180 - MIR SINE MIR -68 140 40 415 200 11 67 chr11 83997343 83997433 -64786039 + MER5A DNA MER1_type 3 87 -102 251 236 276 0 chr11 83998067 83998190 -64785282 + MIR3 SINE MIR 31 187 -21 192 297 81 36 chr11 83998965 83999076 -64784396 - L3 LINE CR1 -90 1487 1372 387 336 73 0 chr11 83999125 83999262 -64784210 - MIR SINE MIR 0 262 116 520 278 14 21 chr11 83999285 83999494 -64783978 - MIR SINE MIR 0 262 1 569 304 121 41 chr11 83999531 83999945 -64783527 + L2 LINE L2 2826 3272 0 354 250 35 26 chr11 84000169 84000285 -64783187 + MER5B DNA MER1_type 1 117 -61 365 200 21 63 chr11 84001231 84001326 -64782146 - MER5B DNA MER1_type -81 97 7 186 277 77 0 chr11 84002095 84002160 -64781312 - MIR SINE MIR -76 186 117 405 257 147 22 chr11 84002216 84002394 -64781078 - MIR SINE MIR -54 208 11 2702 88 3 0 chr11 84002415 84002766 -64780706 - THE1A LTR MaLR 0 355 4 11787 98 6 2 chr11 84002769 84004343 -64779129 - THE1A-int LTR MaLR 0 1580 1 2718 88 8 3 chr11 84004343 84004696 -64778776 - THE1A LTR MaLR 0 355 1 276 140 0 150 chr11 84004803 84004903 -64778569 + MIR SINE MIR 68 152 -110 292 265 59 20 chr11 84005314 84005416 -64778056 + MIR SINE MIR 44 149 -59 2564 16 63 13 chr11 84005863 84006178 -64777294 - SVA Other Other 0 1386 1056 1125 223 185 50 chr11 84006278 84006334 -64777138 + HAL1 LINE L1 413 460 -2047 2077 152 22 33 chr11 84006334 84006383 -64777089 - THE1B LTR MaLR 0 364 316 2091 96 0 3 chr11 84006383 84006687 -64776785 - AluY SINE Alu 0 304 2 2077 152 22 33 chr11 84006687 84007004 -64776468 - THE1B LTR MaLR -48 316 1 1125 223 185 50 chr11 84007004 84007062 -64776410 + HAL1 LINE L1 460 509 -1998 2650 122 58 15 chr11 84007062 84007472 -64776000 + MSTA LTR MaLR 1 428 0 1125 223 185 50 chr11 84007472 84007555 -64775917 + HAL1 LINE L1 509 579 -1928 2151 161 112 28 chr11 84007555 84007818 -64775654 - MLT1D LTR MaLR 0 505 265 1930 102 0 53 chr11 84007818 84008141 -64775331 - AluY SINE Alu -5 306 1 2151 161 112 28 chr11 84008141 84008343 -64775129 - MLT1D LTR MaLR -240 265 1 1125 223 185 50 chr11 84008343 84008618 -64774854 + HAL1 LINE L1 579 951 -1556 2361 227 103 28 chr11 84008641 84009284 -64774188 + HAL1 LINE L1 1089 1682 -825 222 37 0 0 chr11 84009284 84009311 -64774161 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 1637 136 39 25 chr11 84009311 84009591 -64773881 - AluJb SINE Alu -28 284 1 2361 227 103 28 chr11 84009591 84009703 -64773769 + HAL1 LINE L1 1681 1902 -605 188 302 0 0 chr11 84010684 84010727 -64772745 - L2 LINE L2 -9 3304 3262 2156 161 12 47 chr11 84011446 84011850 -64771622 + MLT1B LTR MaLR 1 390 0 444 276 19 0 chr11 84012235 84012340 -64771132 + HAL1 LINE L1 186 292 -2215 782 229 51 111 chr11 84062460 84062744 -64720728 + HAL1b LINE L1 723 970 -378 1334 242 111 14 chr11 84062744 84063169 -64720303 + MLT1C LTR MaLR 1 466 -1 782 229 51 111 chr11 84063169 84063352 -64720120 + HAL1b LINE L1 970 1162 -186 315 0 0 0 chr11 84063428 84063463 -64720009 + (T)n Simple_repeat Simple_repeat 1 35 0 24 0 0 0 chr11 84063486 84063510 -64719962 + GC_rich Low_complexity Low_complexity 1 24 0 2517 60 0 13 chr11 84063644 84063959 -64719513 - AluY SINE Alu 0 311 1 2064 141 0 20 chr11 84064019 84064325 -64719147 + AluJb SINE Alu 1 300 -12 22 0 0 0 chr11 84064403 84064425 -64719047 + AT_rich Low_complexity Low_complexity 1 22 0 240 305 123 13 chr11 84064551 84064705 -64718767 - L1ME LINE L1 -569 5552 5382 4530 193 38 12 chr11 84065071 84066857 -64716615 - L1MB5 LINE L1 -36 6138 4301 261 247 0 34 chr11 84066862 84066951 -64716521 - L1MB5 LINE L1 -2133 4013 3928 416 278 133 6 chr11 84066958 84067131 -64716341 - L1MB5 LINE L1 -2300 3846 3652 211 311 90 33 chr11 84067731 84067853 -64715619 + L2 LINE L2 3144 3272 0 288 242 141 0 chr11 84068355 84068454 -64715018 + MIR SINE MIR 91 203 -59 575 232 20 40 chr11 84068592 84068743 -64714729 - MER97c DNA MER1_type? -916 174 27 369 299 68 53 chr11 84069462 84069669 -64713803 + L2 LINE L2 2487 2696 -618 1935 152 3 10 chr11 84069884 84070180 -64713292 - AluSx SINE Alu -16 296 3 316 240 74 41 chr11 84071025 84071146 -64712326 - MIR SINE MIR -16 246 122 212 295 72 43 chr11 84071448 84071587 -64711885 + MIR SINE MIR 114 256 -6 320 225 8 0 chr11 84071669 84071798 -64711674 + (TG)n Simple_repeat Simple_repeat 1 130 0 519 273 7 7 chr11 84073090 84073233 -64710239 + MIR SINE MIR 5 147 -115 2189 125 3 6 chr11 84073304 84073615 -64709857 - AluSx SINE Alu -2 310 1 684 249 63 46 chr11 84073794 84074031 -64709441 + MIR SINE MIR 1 241 -21 233 297 0 33 chr11 84074394 84074485 -64708987 + MIR3 SINE MIR 97 184 -24 286 372 36 7 chr11 84075274 84075411 -64708061 + MIR SINE MIR 9 149 -113 209 130 14 159 chr11 84075703 84075772 -64707700 - L2 LINE L2 -27 3245 3187 * 215 299 30 0 chr11 84075753 84075820 -64707652 + MIR SINE MIR 134 202 -60 1414 265 63 62 chr11 84075870 84076695 -64706777 - L2 LINE L2 -5 3308 2244 284 291 93 66 chr11 84077388 84077570 -64705902 + MIR3 SINE MIR 11 197 -11 250 327 122 35 chr11 84077840 84078094 -64705378 + L2 LINE L2 2338 2613 -701 349 333 104 0 chr11 84078271 84078463 -64705009 - MIR SINE MIR -7 255 44 292 308 62 97 chr11 84078643 84078984 -64704488 + L2 LINE L2 2943 3271 -1 236 223 204 0 chr11 84079144 84079247 -64704225 - MIR SINE MIR -1 261 138 1998 205 63 11 chr11 84079566 84080010 -64703462 + MLT1C LTR MaLR 1 467 0 892 171 13 7 chr11 84080852 84081034 -64702438 + FRAM SINE Alu 1 180 0 3748 106 57 39 chr11 84081319 84081916 -64701556 + MER4B LTR ERV1 2 609 -1 189 0 0 0 chr11 84082089 84082110 -64701362 + (TCTCC)n Simple_repeat Simple_repeat 1 21 0 320 155 23 155 chr11 84083588 84083717 -64699755 + HsTC2 DNA Tc2 1784 1895 -3 474 299 27 7 chr11 84083989 84084136 -64699336 - MER117 DNA MER1_type -43 154 5 316 206 14 14 chr11 84084789 84084862 -64698610 + MLT1F LTR MaLR 1 73 -469 497 206 147 22 chr11 84084865 84085001 -64698471 + MLT1E LTR MaLR 441 593 0 212 335 71 53 chr11 84085028 84085198 -64698274 - MIR SINE MIR -70 192 20 389 264 144 30 chr11 84085460 84085627 -64697845 - MIR SINE MIR -29 233 48 313 312 0 0 chr11 84086763 84086840 -64696632 - MIR SINE MIR -109 153 77 665 342 95 9 chr11 84086939 84087255 -64696217 + L3 LINE CR1 1188 1530 -47 1443 189 146 0 chr11 84087481 84087741 -64695731 - AluJo SINE Alu -4 298 1 335 286 75 0 chr11 84087783 84087916 -64695556 + L1P LINE L1 4903 5045 -1101 28 0 0 0 chr11 84088962 84088990 -64694482 + AT_rich Low_complexity Low_complexity 1 28 0 707 279 128 6 chr11 84089050 84089387 -64694085 - L2 LINE L2 -17 3296 2919 246 128 0 0 chr11 84089759 84089798 -64693674 + (ATGGTG)n Simple_repeat Simple_repeat 4 42 0 427 298 50 7 chr11 84089843 84089984 -64693488 - MIR SINE MIR -85 177 31 988 254 32 9 chr11 84090877 84091094 -64692378 - MER58A DNA MER1_type -1 223 2 252 274 0 0 chr11 84091158 84091220 -64692252 - MIR3 SINE MIR -20 188 127 1244 281 86 3 chr11 84091302 84091687 -64691785 + MLT1J LTR MaLR 3 419 -92 682 289 100 43 chr11 84091687 84092179 -64691293 - L1MDa LINE L1 -4674 1541 1022 43868 33 22 1 chr11 84092194 84098221 -64685251 + L1PA3 LINE L1 2 6155 0 1269 317 113 18 chr11 84098310 84099241 -64684231 - L1MDa LINE L1 -5341 1055 37 281 208 0 94 chr11 84099248 84099344 -64684128 + MLT1J LTR MaLR 417 503 -8 306 305 0 78 chr11 84099360 84099488 -64683984 - MIR SINE MIR -34 228 111 373 366 72 23 chr11 84100197 84100544 -64682928 + LTR16C LTR ERVL 128 491 0 257 250 46 86 chr11 84100978 84101130 -64682342 + L2 LINE L2 2613 2758 -556 200 384 101 6 chr11 84101184 84101343 -64682129 + L2 LINE L2 2872 3045 -227 516 271 100 38 chr11 84101605 84101815 -64681657 - MIR SINE MIR -6 256 34 616 259 0 0 chr11 84101842 84101973 -64681499 + MER94 DNA DNA 4 134 0 2444 127 37 11 chr11 84102206 84102561 -64680911 + THE1B LTR MaLR 1 364 0 1659 176 24 3 chr11 84102596 84102885 -64680587 - AluJo SINE Alu -15 297 3 563 271 52 76 chr11 84103022 84103273 -64680199 - MIR SINE MIR 0 262 18 23 33 0 0 chr11 84103781 84103811 -64679661 + AT_rich Low_complexity Low_complexity 1 30 0 232 335 92 20 chr11 84103815 84103967 -64679505 - L2 LINE L2 -239 3033 2871 588 165 0 0 chr11 84104908 84105005 -64678467 + MLT1B LTR MaLR 1 97 -293 1888 142 17 0 chr11 84105071 84105360 -64678112 + MLT1B LTR MaLR 97 390 0 879 179 45 0 chr11 84105396 84105552 -64677920 - AluJb SINE Alu -17 295 133 1031 215 29 0 chr11 84105553 84105762 -64677710 - MER58A DNA MER1_type -9 215 1 354 278 106 56 chr11 84106478 84106658 -64676814 - MIR3 SINE MIR -13 195 7 23 0 0 0 chr11 84106758 84106781 -64676691 + AT_rich Low_complexity Low_complexity 1 23 0 185 302 88 50 chr11 84107092 84107251 -64676221 + MIR3 SINE MIR 20 184 -24 439 251 200 17 chr11 84107771 84107946 -64675526 + MIR SINE MIR 25 231 -31 309 326 43 14 chr11 84108632 84108770 -64674702 - MIR3 SINE MIR -2 206 65 1644 191 28 36 chr11 84109105 84109462 -64674010 + MLT1A1 LTR MaLR 12 365 0 468 0 0 0 chr11 84109636 84109688 -64673784 + (TTA)n Simple_repeat Simple_repeat 2 53 0 1059 245 37 0 chr11 84109974 84110190 -64673282 - MER58A DNA MER1_type 0 224 1 367 289 63 42 chr11 84110418 84110608 -64672864 - MIR SINE MIR -46 216 23 511 229 189 0 chr11 84110789 84110911 -64672561 + MER5A DNA MER1_type 39 183 -6 225 0 0 0 chr11 84111288 84111313 -64672159 + (CAT)n Simple_repeat Simple_repeat 2 26 0 821 282 69 0 chr11 84111341 84111543 -64671929 - MIR SINE MIR -42 220 5 344 296 11 11 chr11 84111566 84111654 -64671818 - MIR SINE MIR -161 101 14 314 335 55 28 chr11 84111756 84111938 -64671534 + L2 LINE L2 3073 3259 -13 1137 130 101 0 chr11 84111984 84112153 -64671319 - MER5A DNA MER1_type 0 189 4 286 363 37 15 chr11 84113033 84113168 -64670304 + L2 LINE L2 3125 3262 -10 264 280 56 24 chr11 84113157 84113282 -64670190 + L3 LINE CR1 1239 1367 -210 * 270 240 168 24 chr11 84113286 84113411 -64670061 + MIR SINE MIR 120 262 0 212 260 20 0 chr11 84113488 84113538 -64669934 + CT-rich Low_complexity Low_complexity 2 52 0 206 398 0 8 chr11 84113552 84113675 -64669797 + (TCTA)n Simple_repeat Simple_repeat 2 123 0 578 260 94 31 chr11 84114315 84114538 -64668934 + MIR SINE MIR 20 256 -6 593 294 127 25 chr11 84114543 84114859 -64668613 + L3 LINE CR1 1042 1389 -188 237 216 107 24 chr11 84115262 84115344 -64668128 + MIR SINE MIR 59 113 -95 234 293 95 9 chr11 84116873 84116989 -64666483 + MIR SINE MIR 50 175 -87 430 261 9 0 chr11 84119036 84119151 -64664321 - MIR SINE MIR -80 182 67 2711 102 6 3 chr11 84119207 84119570 -64663902 - THE1B LTR MaLR 0 364 1 1829 157 44 14 chr11 84120025 84120319 -64663153 - MER1B DNA MER1_type -36 303 1 1464 148 35 0 chr11 84120319 84120548 -64662924 + MSTC LTR MaLR 191 427 -1 202 356 51 8 chr11 84122001 84122119 -64661353 + MIR SINE MIR 17 139 -69 1273 264 113 13 chr11 84122807 84123348 -64660124 + L1ME4a LINE L1 5526 6120 -1 220 191 0 0 chr11 84123693 84123735 -64659737 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 212 143 95 0 chr11 84123896 84123938 -64659534 + L2 LINE L2 3227 3272 0 188 374 33 0 chr11 84124056 84124147 -64659325 - MIR SINE MIR -85 123 30 263 285 88 92 chr11 84124174 84124434 -64659038 + L2 LINE L2 3005 3263 -9 473 248 201 48 chr11 84125034 84125328 -64658144 + MLT1K LTR MaLR 1 339 -249 1919 109 81 3 chr11 84125367 84125650 -64657822 + AluSq SINE Alu 1 305 -8 35867 88 8 16 chr11 84125668 84130702 -64652770 + L1P LINE L1 11 5003 -1143 712 259 33 24 chr11 84130753 84130965 -64652507 - LTR33 LTR ERVL -307 214 1 332 185 28 74 chr11 84130965 84131017 -64652455 + MLT1K LTR MaLR 467 513 -75 2048 123 3 29 chr11 84131017 84131325 -64652147 - AluSx SINE Alu -12 300 1 332 185 28 74 chr11 84131325 84131380 -64652092 + MLT1K LTR MaLR 513 569 -19 2346 192 4 34 chr11 84131443 84131942 -64651530 - L1MB4 LINE L1 0 6180 5697 292 333 43 14 chr11 84132912 84133050 -64650422 - MIR SINE MIR -1 261 120 208 343 0 34 chr11 84133208 84133354 -64650118 + CT-rich Low_complexity Low_complexity 1 141 0 1579 117 19 0 chr11 84133714 84133927 -64649545 + AluSc SINE Alu 1 217 -92 274 226 10 49 chr11 84134128 84134230 -64649242 - MIR SINE MIR -107 155 58 1519 161 46 56 chr11 84134995 84135299 -64648173 - AluJo SINE Alu -11 301 1 433 255 14 14 chr11 84135327 84135468 -64648004 - MIR SINE MIR -12 250 110 2126 137 0 3 chr11 84135704 84136010 -64647462 + AluJb SINE Alu 1 305 -7 23 0 0 0 chr11 84136185 84136208 -64647264 + GC_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr11 84136229 84136252 -64647220 + (A)n Simple_repeat Simple_repeat 1 23 0 1331 279 157 20 chr11 84136344 84137298 -64646174 - HAL1 LINE L1 -133 2374 1290 189 293 12 24 chr11 84137375 84137457 -64646015 - MIR SINE MIR -14 248 168 404 289 74 0 chr11 84137836 84137971 -64645501 + MER103 DNA DNA 3 147 -19 383 304 75 96 chr11 84138197 84138637 -64644835 + L2 LINE L2 2875 3305 -8 291 282 24 0 chr11 84139423 84139508 -64643964 + L2 LINE L2 3186 3272 0 1903 191 0 32 chr11 84139680 84140056 -64643416 + MLT1A1 LTR MaLR 2 365 0 1859 162 0 23 chr11 84141196 84141499 -64641973 - AluJb SINE Alu -16 296 1 370 136 123 12 chr11 84142605 84142686 -64640786 - MIR3 SINE MIR -9 199 110 193 311 73 60 chr11 84142988 84143139 -64640333 + L2 LINE L2 2957 3109 -163 1588 232 82 23 chr11 84143980 84144467 -64639005 + LTR33 LTR ERVL 4 519 -2 1761 150 0 0 chr11 84144472 84144765 -64638707 + L1MB3 LINE L1 5891 6183 0 227 77 0 26 chr11 84145297 84145336 -64638136 + (TTATA)n Simple_repeat Simple_repeat 2 39 0 4778 75 11 0 chr11 84146125 84146748 -64636724 - L1PA8 LINE L1 -1 6171 5542 497 218 7 35 chr11 84147011 84147153 -64636319 + L1ME4a LINE L1 5538 5675 -446 261 228 323 24 chr11 84147129 84147256 -64636216 + L1ME4a LINE L1 5881 6045 -76 * 276 104 42 0 chr11 84147278 84147326 -64636146 - L1MB1 LINE L1 -3 6165 6116 * 1658 174 33 47 chr11 84147311 84147673 -64635799 - L1 LINE L1 -1085 5061 4705 * 1751 199 35 3 chr11 84147663 84148035 -64635437 - L1 LINE L1 -1680 4466 4083 350 354 32 14 chr11 84148040 84148325 -64635147 + L2 LINE L2 2658 2947 -367 226 365 67 10 chr11 84148554 84148658 -64634814 + L2 LINE L2 3161 3270 -2 182 77 0 0 chr11 84148765 84148791 -64634681 + MIR SINE MIR 124 149 -113 238 288 0 15 chr11 84149835 84149901 -64633571 + L2 LINE L2 3204 3268 -4 195 296 184 0 chr11 84149920 84150018 -64633454 - L2 LINE L2 -12 3301 3186 268 215 0 15 chr11 84152240 84152305 -64631167 + (CA)n Simple_repeat Simple_repeat 1 64 0 574 198 136 12 chr11 84152313 84152475 -64630997 + MER112 DNA MER1_type 77 258 -2 1689 258 158 5 chr11 84152479 84153222 -64630250 + L2 LINE L2 2118 2973 -341 1704 163 33 96 chr11 84153245 84153674 -64629798 - MLT2D LTR ERVL -3 411 10 798 257 45 67 chr11 84153678 84154009 -64629463 + L2 LINE L2 2990 3313 0 180 200 0 0 chr11 84155184 84155229 -64628243 + (TCTCTG)n Simple_repeat Simple_repeat 6 50 0 236 289 26 26 chr11 84155312 84155388 -64628084 + MIR SINE MIR 44 119 -89 279 297 40 61 chr11 84155433 84155581 -64627891 + MIR3 SINE MIR 3 147 -61 269 250 73 4 chr11 84155611 84155710 -64627762 + MIR SINE MIR 7 109 -99 537 325 32 12 chr11 84155710 84155962 -64627510 - MIR SINE MIR 0 262 6 211 335 68 26 chr11 84157194 84157385 -64626087 + L2 LINE L2 2686 2884 -430 281 364 68 0 chr11 84157885 84158017 -64625455 + MIR3 SINE MIR 34 174 -34 198 303 162 0 chr11 84158043 84158142 -64625330 - L2 LINE L2 -1 3271 3157 546 291 78 35 chr11 84158264 84158522 -64624950 + L3 LINE CR1 1307 1575 -2 327 283 103 21 chr11 84159072 84159217 -64624255 - MIR SINE MIR -70 192 36 809 279 43 0 chr11 84159410 84159643 -64623829 - MIR SINE MIR -8 254 12 705 290 5 0 chr11 84159998 84160184 -64623288 + MER117 DNA MER1_type 11 197 0 200 325 40 60 chr11 84160634 84160886 -64622586 + L2 LINE L2 2959 3205 -108 184 283 28 75 chr11 84161236 84161342 -64622130 + L2 LINE L2 2715 2815 -499 185 335 76 81 chr11 84161418 84161654 -64621818 + L2 LINE L2 3000 3234 -38 268 310 10 30 chr11 84161678 84161778 -64621694 - MIR SINE MIR -58 150 53 324 291 63 42 chr11 84161876 84162113 -64621359 - Charlie8 DNA MER1_type -2172 245 4 248 330 108 10 chr11 84162853 84163056 -64620416 + MIR SINE MIR 34 256 -6 204 231 19 0 chr11 84163221 84163273 -64620199 + L2 LINE L2 3261 3313 0 263 373 24 0 chr11 84163515 84163641 -64619831 - L2 LINE L2 -226 3046 2918 272 310 118 27 chr11 84163674 84163861 -64619611 - MIR SINE MIR -13 249 46 237 330 103 10 chr11 84164631 84164825 -64618647 + MIR SINE MIR 21 232 -30 517 281 20 0 chr11 84165653 84165806 -64617666 + MIR SINE MIR 94 249 -13 21 36 0 0 chr11 84166885 84166913 -64616559 + AT_rich Low_complexity Low_complexity 1 28 0 272 297 83 35 chr11 84167506 84167651 -64615821 - L2 LINE L2 -4 3268 3117 294 224 59 0 chr11 84167844 84167929 -64615543 - MIR SINE MIR 0 262 173 442 171 12 0 chr11 84167971 84168053 -64615419 - MIR SINE MIR -64 198 116 247 282 109 18 chr11 84168093 84168203 -64615269 - MIR SINE MIR -72 136 17 2168 133 37 0 chr11 84168331 84168708 -64614764 - L1 LINE L1 -1309 4837 4447 269 279 0 0 chr11 84168754 84168815 -64614657 + MLT1I LTR MaLR 345 405 -4 194 273 202 10 chr11 84168818 84168917 -64614555 - MIR SINE MIR -98 164 47 2290 76 20 10 chr11 84169970 84170274 -64613198 + AluY SINE Alu 5 311 0 607 297 79 60 chr11 84170502 84171122 -64612350 + L1MC4a LINE L1 5255 5624 -546 338 329 20 34 chr11 84171371 84171520 -64611952 + L3 LINE CR1 1426 1572 -5 219 277 169 33 chr11 84172278 84172491 -64610981 + MIR SINE MIR 2 243 -19 235 237 151 0 chr11 84172840 84172932 -64610540 + MIR SINE MIR 63 166 -66 189 195 0 0 chr11 84173090 84173131 -64610341 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 2223 138 0 0 chr11 84173554 84173865 -64609607 - AluSx SINE Alu -1 311 1 183 414 0 0 chr11 84173873 84173960 -64609512 + MIR3 SINE MIR 110 196 -12 424 285 145 16 chr11 84175597 84175783 -64607689 + MIR SINE MIR 20 229 -33 1942 133 0 40 chr11 84176161 84176462 -64607010 - AluJo SINE Alu -19 293 5 198 103 0 0 chr11 84176538 84176567 -64606905 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 2300 123 14 6 chr11 84176773 84177131 -64606341 - MER46B DNA MER2_type 0 236 1 267 300 79 14 chr11 84177218 84177358 -64606114 - MIR SINE MIR -15 247 99 228 316 20 0 chr11 84177599 84177697 -64605775 - L2 LINE L2 -226 3046 2947 22 0 0 0 chr11 84177873 84177895 -64605577 + AT_rich Low_complexity Low_complexity 1 22 0 375 299 16 16 chr11 84178248 84178375 -64605097 + MIR3 SINE MIR 69 195 -13 266 288 78 78 chr11 84178749 84178940 -64604532 + MIR3 SINE MIR 17 207 -1 228 311 112 65 chr11 84178952 84179273 -64604199 - L2 LINE L2 -1 3271 2936 243 182 143 0 chr11 84179369 84179446 -64604026 - MIR SINE MIR -48 214 127 196 310 0 28 chr11 84179830 84179901 -64603571 - L2 LINE L2 0 3272 3204 298 299 37 9 chr11 84180110 84180217 -64603255 + L2 LINE L2 3204 3313 0 211 246 14 14 chr11 84180263 84180332 -64603140 + L2 LINE L2 3245 3313 0 221 294 20 0 chr11 84180343 84180394 -64603078 - L2 LINE L2 -83 3189 3138 262 284 94 24 chr11 84180593 84180720 -64602752 + MLT1K LTR MaLR 281 416 -172 819 233 17 11 chr11 84181795 84181971 -64601501 + MER45A DNA AcHobo 2 178 0 493 271 8 8 chr11 84182487 84182609 -64600863 - MER94 DNA DNA -4 130 9 227 291 0 0 chr11 84182630 84182685 -64600787 + L2 LINE L2 3251 3305 -8 738 209 14 7 chr11 84182721 84182860 -64600612 + AluJb SINE Alu 134 273 -39 812 166 6 20 chr11 84182870 84183182 -64600290 + GA-rich Low_complexity Low_complexity 1 307 0 1945 153 140 11 chr11 84184257 84184636 -64598836 - MSTA LTR MaLR 0 428 1 1124 247 82 32 chr11 84184845 84185250 -64598222 - L2 LINE L2 -515 2799 2375 1592 92 119 0 chr11 84185825 84186086 -64597386 - L1MA5A LINE L1 -10 6287 5996 604 270 6 49 chr11 84186266 84186579 -64596893 - MLT1I LTR MaLR 0 409 57 346 233 0 22 chr11 84186929 84187019 -64596453 - MIR SINE MIR -66 196 109 1484 115 17 13 chr11 84187344 84187579 -64595893 + THE1A-int LTR MaLR 1345 1580 0 2383 122 8 3 chr11 84187579 84187932 -64595540 + THE1A LTR MaLR 1 355 0 788 202 0 42 chr11 84187960 84188128 -64595344 + FRAM SINE Alu 1 161 -5 1384 190 56 7 chr11 84188300 84188624 -64594848 + AluJb SINE Alu 4 340 0 198 268 28 56 chr11 84189152 84189223 -64594249 + MIR SINE MIR 6 74 -188 408 343 29 14 chr11 84189356 84189566 -64593906 - MIR SINE MIR -3 259 47 2148 103 0 0 chr11 84189675 84189946 -64593526 + AluSc SINE Alu 1 271 -38 1679 194 3 16 chr11 84189950 84190254 -64593218 + AluJo SINE Alu 1 300 -12 558 13 38 0 chr11 84190276 84190355 -64593117 + (CA)n Simple_repeat Simple_repeat 1 82 0 189 306 45 67 chr11 84190355 84190483 -64592989 - MER5A DNA MER1_type -60 129 5 657 172 11 22 chr11 84190817 84190997 -64592475 + CT-rich Low_complexity Low_complexity 3 180 0 2045 134 0 16 chr11 84191002 84191316 -64592156 - AluSc SINE Alu 0 309 1 578 226 46 0 chr11 84191326 84191521 -64591951 - L1MA9 LINE L1 -38 6274 5998 330 87 0 0 chr11 84191620 84191666 -64591806 + (TC)n Simple_repeat Simple_repeat 2 47 0 308 374 43 0 chr11 84192111 84192250 -64591222 - MIR SINE MIR -70 192 48 267 189 0 0 chr11 84192375 84192428 -64591044 + (CA)n Simple_repeat Simple_repeat 2 54 0 256 328 80 8 chr11 84192466 84192591 -64590881 - MIR SINE MIR -56 152 19 302 296 141 0 chr11 84192695 84192837 -64590635 + MIR SINE MIR 101 262 0 231 282 16 52 chr11 84193413 84193514 -64589958 + MIR SINE MIR 7 105 -103 265 339 66 0 chr11 84193840 84193961 -64589511 - L2 LINE L2 -8 3264 3136 242 246 33 0 chr11 84194204 84194265 -64589207 - L2 LINE L2 0 3272 3210 224 343 0 0 chr11 84194986 84195056 -64588416 + (CCCA)n Simple_repeat Simple_repeat 3 72 0 205 345 73 26 chr11 84195201 84195392 -64588080 - L2 LINE L2 -201 3071 2872 184 143 0 102 chr11 84195612 84195661 -64587811 - L2 LINE L2 -1 3312 3269 193 234 0 21 chr11 84195935 84195982 -64587490 - L2 LINE L2 -70 3243 3198 213 267 120 0 chr11 84196037 84196112 -64587360 + L2 LINE L2 3198 3281 -32 266 313 118 14 chr11 84196570 84196714 -64586758 + MIR SINE MIR 104 262 0 439 338 13 7 chr11 84196761 84196912 -64586560 + MIR3 SINE MIR 17 168 -40 373 331 50 0 chr11 84197036 84197196 -64586276 - MER91A DNA MER1_type -28 168 1 217 322 16 71 chr11 84197425 84197608 -64585864 + L2 LINE L2 2892 3064 -208 210 184 0 0 chr11 84197678 84197716 -64585756 - MIR SINE MIR -62 146 109 823 181 16 28 chr11 84197851 84198033 -64585439 + MER5A DNA MER1_type 1 180 -9 586 249 17 90 chr11 84198171 84198330 -64585142 + L2 LINE L2 3033 3161 -152 1600 212 13 29 chr11 84198330 84198707 -64584765 - MLT1A2 LTR MaLR 0 374 4 586 249 17 90 chr11 84198707 84198848 -64584624 + L2 LINE L2 3161 3311 -2 186 43 0 0 chr11 84199221 84199244 -64584228 + (T)n Simple_repeat Simple_repeat 1 23 0 215 359 38 9 chr11 84199868 84199974 -64583498 - MIR SINE MIR -58 204 96 659 303 54 8 chr11 84200033 84200281 -64583191 + MIR SINE MIR 5 257 -5 416 257 7 15 chr11 84200410 84200546 -64582926 - MIR3 SINE MIR -61 147 13 458 323 36 27 chr11 84201135 84201355 -64582117 - MIR SINE MIR -18 244 23 321 256 60 8 chr11 84202331 84202448 -64581024 - MIR SINE MIR -80 182 60 21 0 0 0 chr11 84202797 84202818 -64580654 + AT_rich Low_complexity Low_complexity 1 21 0 460 332 30 5 chr11 84203106 84203338 -64580134 - MIR SINE MIR -13 249 15 242 94 0 0 chr11 84203706 84203738 -64579734 - L1P LINE L1 -783 5385 5354 * 5690 93 8 10 chr11 84203737 84204536 -64578936 + L1PA13 LINE L1 5363 6159 -4 186 244 64 13 chr11 84204570 84204648 -64578824 - L2 LINE L2 -265 3007 2926 406 239 99 35 chr11 84205287 84205429 -64578043 - MER103 DNA DNA 0 166 16 239 327 36 0 chr11 84205540 84205650 -64577822 - MIR SINE MIR -82 180 67 208 292 0 0 chr11 84205752 84205800 -64577672 + (CA)n Simple_repeat Simple_repeat 1 48 0 323 382 48 5 chr11 84205904 84206090 -64577382 - MIR SINE MIR -48 214 21 282 321 36 21 chr11 84206514 84206654 -64576818 + MIR3 SINE MIR 20 161 -47 184 240 20 0 chr11 84207207 84207257 -64576215 + MIR3 SINE MIR 140 190 -18 278 340 131 0 chr11 84208057 84208248 -64575224 - MIR SINE MIR -10 252 37 250 243 207 18 chr11 84208263 84208374 -64575098 - MIR SINE MIR -98 164 33 287 259 130 15 chr11 84208674 84208805 -64574667 + MIR3 SINE MIR 59 204 -4 1635 182 14 61 chr11 84209141 84209503 -64573969 + MLT2C1 LTR ERVL 5 349 -48 1869 176 0 3 chr11 84209503 84209810 -64573662 + AluJo SINE Alu 1 306 -6 2487 58 3 13 chr11 84209929 84210237 -64573235 - AluY SINE Alu -6 305 1 363 91 36 0 chr11 84210242 84210297 -64573175 + MLT2C1 LTR ERVL 464 520 0 246 291 36 97 chr11 84210410 84210606 -64572866 + MIR SINE MIR 29 212 -50 192 158 0 0 chr11 84210660 84210698 -64572774 + CT-rich Low_complexity Low_complexity 3 40 0 215 314 95 48 chr11 84210892 84211102 -64572370 + L2 LINE L2 3006 3225 -88 22 35 0 0 chr11 84211192 84211221 -64572251 + AT_rich Low_complexity Low_complexity 1 29 0 241 282 128 8 chr11 84211256 84211373 -64572099 - MIR SINE MIR -67 141 22 247 169 63 61 chr11 84211758 84211848 -64571624 - MIR SINE MIR -67 141 49 245 318 142 34 chr11 84212492 84212725 -64570747 - L2 LINE L2 -557 2757 2500 488 242 60 28 chr11 84212757 84212939 -64570533 + MIR SINE MIR 21 208 -54 288 280 91 51 chr11 84213027 84213202 -64570270 + MIR SINE MIR 62 243 -19 502 260 101 93 chr11 84213318 84213726 -64569746 + MLT1J LTR MaLR 99 509 -2 25 0 0 0 chr11 84214131 84214156 -64569316 + AT_rich Low_complexity Low_complexity 1 25 0 293 331 62 0 chr11 84214279 84214409 -64569063 + MIR SINE MIR 123 260 -2 447 315 107 19 chr11 84214922 84215138 -64568334 + MIR SINE MIR 17 251 -11 1936 146 14 3 chr11 84215276 84215563 -64567909 - AluJo SINE Alu -22 290 1 572 310 35 13 chr11 84215896 84216122 -64567350 - MIR SINE MIR -7 255 25 321 307 100 7 chr11 84216459 84216609 -64566863 + MIR SINE MIR 7 170 -92 213 217 0 33 chr11 84217468 84217560 -64565912 + CT-rich Low_complexity Low_complexity 4 92 0 401 309 51 17 chr11 84217722 84217897 -64565575 + L2 LINE L2 2299 2479 -835 1693 189 0 3 chr11 84217931 84218237 -64565235 - AluSx SINE Alu 0 305 1 323 291 48 0 chr11 84219720 84219823 -64563649 - MIR SINE MIR -107 155 48 222 241 17 17 chr11 84219891 84219949 -64563523 + CT-rich Low_complexity Low_complexity 3 60 0 362 244 317 0 chr11 84219979 84220143 -64563329 + LTR33 LTR ERVL 1 216 -305 587 161 73 8 chr11 84220208 84220332 -64563140 - Charlie1 DNA MER1_type 0 2761 2630 1011 203 10 5 chr11 84220336 84220538 -64562934 - Charlie1 DNA MER1_type -2535 226 24 342 239 46 23 chr11 84220564 84220694 -64562778 + LTR33 LTR ERVL 383 515 -6 847 156 0 106 chr11 84220822 84221021 -64562451 - MER2 DNA MER2_type -167 178 1 301 336 199 0 chr11 84221049 84221260 -64562212 + L3 LINE CR1 1006 1258 -319 2287 87 0 31 chr11 84221274 84221595 -64561877 - AluSq SINE Alu 0 313 3 23 78 0 0 chr11 84222511 84222562 -64560910 + AT_rich Low_complexity Low_complexity 1 51 0 1779 133 97 31 chr11 84222732 84223084 -64560388 + THE1C LTR MaLR 1 375 0 316 293 186 29 chr11 84223231 84223716 -64559756 - L1ME3A LINE L1 -289 5881 5321 318 336 22 29 chr11 84224619 84224756 -64558716 + L2 LINE L2 3137 3272 0 184 322 50 25 chr11 84224805 84224926 -64558546 + MIR SINE MIR 103 226 -36 391 298 99 7 chr11 84225042 84225183 -64558289 - MIR SINE MIR -8 254 101 522 330 52 13 chr11 84226068 84226301 -64557171 + MIR SINE MIR 1 242 -20 741 206 122 5 chr11 84226400 84226589 -64556883 + MIR SINE MIR 31 241 -21 189 326 23 0 chr11 84226597 84226683 -64556789 + L2 LINE L2 3226 3313 0 227 103 26 0 chr11 84227831 84227870 -64555602 + GA-rich Low_complexity Low_complexity 1 40 0 446 319 63 13 chr11 84227968 84228206 -64555266 - Tigger8 DNA MER2_type -25 641 392 295 252 43 78 chr11 84228807 84228922 -64554550 + MIR SINE MIR 72 182 -80 476 250 86 0 chr11 84228968 84229096 -64554376 + MER20 DNA MER1_type 81 219 0 327 302 133 18 chr11 84229228 84229399 -64554073 - MIR SINE MIR -50 212 27 276 100 0 0 chr11 84230092 84230132 -64553340 + (CTCA)n Simple_repeat Simple_repeat 4 43 0 21 0 0 0 chr11 84231175 84231196 -64552276 + AT_rich Low_complexity Low_complexity 1 21 0 254 304 130 10 chr11 84231523 84231708 -64551764 - MIR SINE MIR -14 248 37 248 352 23 16 chr11 84231923 84232051 -64551421 + MIR3 SINE MIR 64 192 -16 344 285 87 92 chr11 84232128 84232208 -64551264 + HAL1b LINE L1 703 782 -566 918 151 22 16 chr11 84232208 84232393 -64551079 + MER53 DNA DNA 4 189 0 344 285 87 92 chr11 84232393 84232519 -64550953 + HAL1b LINE L1 782 908 -440 258 81 0 0 chr11 84233485 84233522 -64549950 + (TG)n Simple_repeat Simple_repeat 1 37 0 2142 165 70 5 chr11 84233902 84234302 -64549170 - MSTB LTR MaLR 0 426 1 452 269 140 32 chr11 84234661 84234847 -64548625 - MIR SINE MIR -52 210 5 2166 126 0 0 chr11 84234970 84235264 -64548208 - AluSg SINE Alu -16 294 1 492 234 0 0 chr11 84236049 84236216 -64547256 + (TA)n Simple_repeat Simple_repeat 1 167 0 440 296 0 0 chr11 84236276 84236391 -64547081 - L2 LINE L2 -1 3312 3198 323 206 242 6 chr11 84236641 84236806 -64546666 + L1ME4a LINE L1 5835 6038 -83 198 285 240 64 chr11 84237296 84237563 -64545909 + L2 LINE L2 2998 3311 -2 237 206 256 18 chr11 84237590 84237813 -64545659 + L1ME4a LINE L1 5835 6110 -11 403 307 16 8 chr11 84238448 84238575 -64544897 - L2 LINE L2 -1 3312 3185 1772 264 58 47 chr11 84238998 84239481 -64543991 + L1ME LINE L1 30 527 -5543 1767 162 12 93 chr11 84239481 84239913 -64543559 + MLT2C1 LTR ERVL 1 397 0 1772 264 58 47 chr11 84239913 84240247 -64543225 + L1ME LINE L1 527 856 -5214 * 16211 199 20 23 chr11 84240241 84241681 -64541791 + L1PA13 LINE L1 1077 2520 -4292 1739 198 3 10 chr11 84241681 84241995 -64541477 - AluSx SINE Alu 0 312 1 16211 199 20 23 chr11 84241995 84245605 -64537867 + L1PA13 LINE L1 2520 6107 -705 243 29 88 0 chr11 84245604 84245638 -64537834 - L1P4 LINE L1 -693 5481 5445 * 69 41 0 0 chr11 84245650 84245747 -64537725 + AT_rich Low_complexity Low_complexity 1 97 0 4047 132 46 0 chr11 84245748 84246417 -64537055 + L1PA13 LINE L1 6096 6795 -19 637 167 0 14 chr11 84246427 84246565 -64536907 + L1MB7 LINE L1 6049 6184 0 195 69 0 0 chr11 84246644 84246673 -64536799 + (A)n Simple_repeat Simple_repeat 1 29 0 1252 260 103 59 chr11 84246791 84247425 -64536047 + L1ME LINE L1 834 1438 -4642 901 217 0 0 chr11 84247425 84247582 -64535890 + FRAM SINE Alu 1 157 -9 1252 260 103 59 chr11 84247582 84248345 -64535127 + L1ME LINE L1 1438 2268 -3812 692 197 51 17 chr11 84248374 84248552 -64534920 + LTR41 LTR ERVL 4 187 -586 532 253 23 69 chr11 84248807 84249068 -64534404 + LTR41 LTR ERVL 510 758 -15 21 57 0 0 chr11 84249103 84249138 -64534334 + AT_rich Low_complexity Low_complexity 1 35 0 553 197 0 16 chr11 84249148 84249270 -64534202 + FRAM SINE Alu 57 176 0 2783 253 109 46 chr11 84249427 84250305 -64533167 + L1ME LINE L1 2572 3393 -2687 1968 95 3 61 chr11 84250305 84250628 -64532844 + AluSc SINE Alu 1 306 0 2783 253 109 46 chr11 84250628 84251589 -64531883 + L1ME LINE L1 3393 4528 -1552 9807 193 22 24 chr11 84251828 84254984 -64528488 - L1PA15 LINE L1 -2 6163 3022 732 248 77 15 chr11 84254984 84255258 -64528214 + L1ME LINE L1 4559 4849 -1231 2559 184 24 9 chr11 84255259 84255809 -64527663 - L1MB3 LINE L1 -8 6175 5618 501 191 42 0 chr11 84255910 84256044 -64527428 - L1MB3 LINE L1 -559 5603 5465 227 268 107 9 chr11 84257549 84257661 -64525811 + MER94 DNA DNA 10 132 -2 406 249 30 106 chr11 84257970 84258207 -64525265 + HsTC2 DNA Tc2 4 222 -1676 410 308 73 52 chr11 84258311 84258601 -64524871 + HsTC2 DNA Tc2 500 801 -1097 2494 74 3 0 chr11 84258601 84258911 -64524561 + AluY SINE Alu 1 311 0 410 308 73 52 chr11 84258911 84259003 -64524469 + HsTC2 DNA Tc2 801 890 -1008 23 0 0 0 chr11 84259523 84259546 -64523926 + AT_rich Low_complexity Low_complexity 1 23 0 312 335 85 77 chr11 84260979 84261525 -64521947 + L2 LINE L2 2698 3264 -8 2705 177 21 11 chr11 84261841 84262456 -64521016 + L1 LINE L1 4346 4966 -1180 6824 131 24 49 chr11 84262456 84263067 -64520405 + L1M1 LINE L1 2486 3111 -4454 2367 108 20 8 chr11 84263067 84263418 -64520054 + THE1A LTR MaLR 1 355 0 6824 131 24 49 chr11 84263418 84264108 -64519364 + L1M1 LINE L1 3111 3751 -3814 2042 139 0 0 chr11 84264108 84264402 -64519070 - AluSg SINE Alu -16 294 1 6824 131 24 49 chr11 84264402 84264900 -64518572 + L1M1 LINE L1 3751 4260 -3305 240 327 222 23 chr11 84264909 84265166 -64518306 - L3 LINE CR1 -6 1571 1264 5177 120 28 8 chr11 84265189 84266048 -64517424 - L1PA13 LINE L1 -22 6141 5266 6859 215 67 15 chr11 84266053 84267618 -64515854 - L1PA13 LINE L1 -5140 1647 1 251 351 123 6 chr11 84267644 84267839 -64515633 - L3 LINE CR1 -344 1233 981 207 388 31 0 chr11 84269344 84269442 -64514030 - L2 LINE L2 -6 3307 3207 261 0 0 0 chr11 84269775 84269804 -64513668 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 253 267 113 46 chr11 84269905 84270100 -64513372 + MLT1K LTR MaLR 379 586 -2 268 283 88 10 chr11 84270589 84270734 -64512738 + MIR SINE MIR 72 230 -32 1817 132 71 0 chr11 84271268 84271562 -64511910 - AluSx SINE Alu 0 313 1 261 381 0 56 chr11 84271568 84271728 -64511744 + L2 LINE L2 3094 3244 -28 232 226 0 0 chr11 84271731 84271784 -64511688 + GA-rich Low_complexity Low_complexity 4 56 0 180 291 13 89 chr11 84271786 84271865 -64511607 + MIR3 SINE MIR 131 203 -5 265 310 97 56 chr11 84272385 84272843 -64510629 - L2 LINE L2 -179 3093 2522 360 223 135 40 chr11 84273497 84273645 -64509827 + L2 LINE L2 3152 3313 0 202 194 0 0 chr11 84273847 84273883 -64509589 + (TCCA)n Simple_repeat Simple_repeat 3 38 0 23 0 0 0 chr11 84274006 84274029 -64509443 + AT_rich Low_complexity Low_complexity 1 23 0 1825 154 24 0 chr11 84274104 84274397 -64509075 - AluSx SINE Alu -12 300 1 212 196 65 0 chr11 84274448 84274494 -64508978 + MIR SINE MIR 122 170 -92 309 345 110 14 chr11 84275363 84275572 -64507900 - MIR SINE MIR -21 241 13 22 0 0 0 chr11 84276882 84276904 -64506568 + AT_rich Low_complexity Low_complexity 1 22 0 816 258 115 5 chr11 84277122 84277331 -64506141 + MIR SINE MIR 31 262 0 434 308 99 68 chr11 84277456 84277898 -64505574 - L2 LINE L2 0 3272 2817 190 330 46 47 chr11 84278106 84278335 -64505137 + L2 LINE L2 2827 3054 -218 314 238 36 36 chr11 84278359 84278443 -64505029 + L2 LINE L2 3221 3304 -9 187 333 27 0 chr11 84278627 84278702 -64504770 + L2 LINE L2 2710 2786 -528 191 385 128 0 chr11 84278744 84278853 -64504619 + L2 LINE L2 3133 3255 -17 229 187 0 165 chr11 84279423 84279514 -64503958 - MIR SINE MIR -3 259 184 235 281 0 0 chr11 84279544 84279601 -64503871 + MIR SINE MIR 206 262 0 222 286 137 75 chr11 84279602 84279763 -64503709 - MIR SINE MIR -67 195 25 195 220 0 60 chr11 84280138 84280188 -64503284 - MIR SINE MIR -96 166 120 1774 158 153 5 chr11 84280215 84280588 -64502884 + MSTA LTR MaLR 1 428 0 378 318 88 7 chr11 84280741 84280889 -64502583 + MIR3 SINE MIR 24 183 -25 253 348 6 73 chr11 84281638 84281802 -64501670 + L3 LINE CR1 949 1101 -476 242 354 62 12 chr11 84282357 84282518 -64500954 + L2 LINE L2 2578 2746 -568 1595 176 14 28 chr11 84282661 84282951 -64500521 - AluJb SINE Alu -13 299 14 313 299 0 0 chr11 84282967 84283084 -64500388 + T-rich Low_complexity Low_complexity 1 117 0 1845 195 95 10 chr11 84283400 84283882 -64499590 + Charlie1b DNA MER1_type 1 523 0 186 311 0 0 chr11 84284007 84284052 -64499420 - L2 LINE L2 -16 3256 3212 194 323 15 15 chr11 84285389 84285454 -64498018 + MIR SINE MIR 30 94 -114 376 273 128 62 chr11 84285487 84285549 -64497923 - MIR SINE MIR -16 246 190 959 237 9 9 chr11 84285549 84285768 -64497704 + MER20 DNA MER1_type 1 219 0 376 273 128 62 chr11 84285768 84285932 -64497540 - MIR SINE MIR -72 190 5 2001 254 130 44 chr11 84287659 84288401 -64495071 + L1MEc LINE L1 45 722 -5493 260 27 27 0 chr11 84288401 84288438 -64495034 + (TA)n Simple_repeat Simple_repeat 2 39 0 2001 254 130 44 chr11 84288438 84290512 -64492960 + L1MEc LINE L1 722 3045 -3170 1126 187 13 8 chr11 84290514 84290749 -64492723 - L1MA4A LINE L1 -1793 4353 4118 5295 157 33 22 chr11 84290755 84291199 -64492273 + L1MA4A LINE L1 4360 4798 -1505 1571 163 82 31 chr11 84291199 84291554 -64491918 + THE1C LTR MaLR 3 375 0 5295 157 33 22 chr11 84291554 84293032 -64490440 + L1MA4A LINE L1 4798 6291 -12 352 178 159 19 chr11 84293016 84293123 -64490349 + L1MEc LINE L1 3018 3139 -3076 * 349 218 15 180 chr11 84293286 84293492 -64489980 - MIR SINE MIR -13 249 78 205 250 0 0 chr11 84293497 84293541 -64489931 - MIR SINE MIR -8 254 211 * 273 306 94 0 chr11 84293537 84293622 -64489850 - MIR SINE MIR -168 94 2 559 252 0 16 chr11 84293847 84293970 -64489502 - FLAM_A SINE Alu -12 121 1 987 341 35 32 chr11 84293984 84294525 -64488947 + L2 LINE L2 2521 3066 -206 * 1305 299 97 75 chr11 84294504 84295165 -64488307 + L2 LINE L2 1827 2472 -841 203 0 0 36 chr11 84295165 84295193 -64488279 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1305 299 97 75 chr11 84295193 84295976 -64487496 + L2 LINE L2 2472 3310 -3 215 304 163 64 chr11 84296428 84296803 -64486669 - L2 LINE L2 -25 3247 2836 231 216 39 0 chr11 84297131 84297182 -64486290 + (CATA)n Simple_repeat Simple_repeat 3 55 0 827 251 17 14 chr11 84297202 84297489 -64485983 + L1ME2 LINE L1 5698 5985 -179 195 344 16 0 chr11 84297506 84297567 -64485905 - MIR SINE MIR -74 188 127 233 288 0 17 chr11 84297821 84297880 -64485592 - MER5A DNA MER1_type -2 187 130 * 300 236 83 14 chr11 84297878 84297950 -64485522 + MER5A DNA MER1_type 113 189 0 205 312 78 13 chr11 84297952 84298029 -64485443 + MER5B DNA MER1_type 82 163 -15 686 323 13 10 chr11 84298472 84298732 -64484740 + MIR SINE MIR 3 262 0 271 311 46 46 chr11 84299558 84299754 -64483718 + L2 LINE L2 2626 2821 -493 196 377 47 67 chr11 84299805 84300102 -64483370 + L2 LINE L2 2891 3181 -91 486 329 41 11 chr11 84300683 84300902 -64482570 - MIR SINE MIR -5 257 34 475 336 91 42 chr11 84301285 84301690 -64481782 + L3 LINE CR1 1138 1562 -15 234 349 93 0 chr11 84302507 84302636 -64480836 - L2 LINE L2 0 3272 3132 476 275 204 2 chr11 84303158 84303475 -64479997 + L1MC4a LINE L1 5467 5593 -528 252 0 0 0 chr11 84303697 84303725 -64479747 + (T)n Simple_repeat Simple_repeat 1 28 0 2360 55 23 10 chr11 84303857 84304164 -64479308 - AluY SINE Alu 0 311 1 35 24 0 0 chr11 84304475 84304517 -64478955 + AT_rich Low_complexity Low_complexity 1 42 0 34 24 0 0 chr11 84304534 84304575 -64478897 + AT_rich Low_complexity Low_complexity 1 41 0 227 203 0 0 chr11 84304751 84304815 -64478657 + L1M4b LINE L1 1608 1671 -5188 363 234 65 19 chr11 84304831 84304938 -64478534 + L1M4b LINE L1 1796 1907 -5040 1196 245 75 17 chr11 84304979 84305338 -64478134 + MLT1J1 LTR MaLR 5 384 -62 225 320 52 52 chr11 84305383 84305536 -64477936 - L3 LINE CR1 -57 1520 1368 294 310 88 9 chr11 84305673 84305786 -64477686 + MIR3 SINE MIR 66 187 -21 225 82 61 0 chr11 84305841 84305890 -64477582 + (TATAA)n Simple_repeat Simple_repeat 4 55 0 463 272 0 26 chr11 84306065 84306179 -64477293 - L3 LINE CR1 -73 1504 1394 359 269 39 51 chr11 84306847 84307003 -64476469 - MIR SINE MIR -49 213 60 634 251 153 0 chr11 84307348 84307531 -64475941 - MIR SINE MIR -21 241 31 428 202 40 0 chr11 84307533 84307632 -64475840 + MLT1J LTR MaLR 319 421 -90 451 299 45 17 chr11 84307732 84307909 -64475563 + MIR3 SINE MIR 20 201 -7 1821 157 137 34 chr11 84308376 84308764 -64474708 + MSTA LTR MaLR 1 428 0 2561 109 43 0 chr11 84308766 84309160 -64474312 + MSTA-int LTR MaLR 3 413 -1167 261 0 0 0 chr11 84309160 84309189 -64474283 + (T)n Simple_repeat Simple_repeat 1 29 0 38 39 0 0 chr11 84309202 84309254 -64474218 + GC_rich Low_complexity Low_complexity 1 52 0 2042 155 0 19 chr11 84309400 84309710 -64473762 - AluSx SINE Alu 0 312 9 6595 158 6 12 chr11 84309783 84310944 -64472528 + MSTA-int LTR MaLR 427 1580 0 1483 130 172 105 chr11 84310944 84311345 -64472127 + MSTA LTR MaLR 1 428 0 327 235 121 114 chr11 84311654 84311672 -64471800 - MIR3 SINE MIR -38 170 154 736 224 29 0 chr11 84311672 84311842 -64471630 + MER5B DNA MER1_type 1 175 -3 327 235 121 114 chr11 84311842 84311972 -64471500 - MIR3 SINE MIR -54 154 21 182 276 11 69 chr11 84312248 84312335 -64471137 - MIR SINE MIR -3 259 178 361 227 0 0 chr11 84312693 84312768 -64470704 - MIR SINE MIR -121 141 67 2402 92 3 0 chr11 84313688 84313991 -64469481 - AluSp SINE Alu -9 304 1 1564 194 7 23 chr11 84314077 84314387 -64469085 - AluJo SINE Alu -7 305 1 264 341 22 36 chr11 84314608 84314746 -64468726 + MIR SINE MIR 70 205 -57 1119 282 83 27 chr11 84315876 84316319 -64467153 + MER115 DNA AcHobo 222 689 -4 241 300 0 0 chr11 84316322 84316382 -64467090 + L2 LINE L2 3251 3310 -3 1986 117 7 4 chr11 84316505 84316830 -64466642 + AluSp SINE Alu 1 326 0 239 285 219 8 chr11 84317259 84317382 -64466090 + MIR3 SINE MIR 3 151 -57 272 246 0 0 chr11 84317714 84317771 -64465701 + MER3 DNA MER1_type 1 57 -152 443 246 209 16 chr11 84318096 84318287 -64465185 - MIR SINE MIR 0 262 35 291 212 179 62 chr11 84318363 84318542 -64464930 + L2 LINE L2 3114 3313 0 194 360 140 7 chr11 84318610 84318760 -64464712 + L2 LINE L2 3102 3271 -1 251 215 215 13 chr11 84319377 84319456 -64464016 + L2 LINE L2 3134 3228 -44 188 176 0 0 chr11 84319652 84319686 -64463786 + L2 LINE L2 3209 3242 -30 225 236 135 34 chr11 84319889 84319978 -64463494 + MER5A DNA MER1_type 16 113 -76 * 258 241 51 51 chr11 84319903 84319982 -64463490 - MER5A DNA MER1_type -28 161 83 222 333 21 0 chr11 84321530 84321626 -64461846 + (CCTAT)n Simple_repeat Simple_repeat 3 100 0 180 0 0 0 chr11 84322075 84322095 -64461377 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 198 306 224 0 chr11 84322388 84322522 -64460950 - MIR SINE MIR 0 262 99 220 310 81 0 chr11 84322595 84322682 -64460790 - MIR SINE MIR -166 96 3 238 338 7 35 chr11 84322879 84323021 -64460451 - L3 LINE CR1 -345 1232 1095 33 0 0 0 chr11 84323090 84323123 -64460349 + AT_rich Low_complexity Low_complexity 1 33 0 351 316 122 32 chr11 84324028 84324275 -64459197 - L2 LINE L2 -493 2821 2553 3489 236 53 34 chr11 84324670 84325934 -64457538 + L1ME1 LINE L1 3980 5302 -864 1990 125 6 55 chr11 84325934 84326262 -64457210 + AluSq SINE Alu 1 312 -1 3489 236 53 34 chr11 84326262 84327136 -64456336 + L1ME1 LINE L1 5302 6159 -7 2184 133 10 0 chr11 84327227 84327527 -64455945 - AluSg SINE Alu -7 303 1 444 291 91 20 chr11 84328062 84328261 -64455211 - MIR SINE MIR -44 218 6 186 43 0 0 chr11 84328515 84328538 -64454934 + (A)n Simple_repeat Simple_repeat 1 23 0 198 0 0 0 chr11 84328695 84328717 -64454755 + (TA)n Simple_repeat Simple_repeat 1 22 0 10397 35 4 1 chr11 84328717 84330726 -64452746 - L1PA5 LINE L1 -18 6136 4121 17191 49 10 0 chr11 84330726 84333024 -64450448 + L1PA5 LINE L1 1806 4126 -2020 600 144 0 36 chr11 84333160 84333299 -64450173 + (GAAA)n Simple_repeat Simple_repeat 3 136 0 684 241 30 35 chr11 84333435 84333638 -64449834 - MIR SINE MIR -5 257 56 255 192 0 39 chr11 84334005 84334057 -64449415 - L2 LINE L2 -7 3265 3216 404 317 10 0 chr11 84334168 84334272 -64449200 + MIR SINE MIR 43 147 -115 230 263 18 0 chr11 84335091 84335148 -64448324 - MIR SINE MIR -147 115 58 305 315 102 57 chr11 84336393 84336726 -64446746 + L2 LINE L2 2424 2771 -543 261 0 0 0 chr11 84336740 84336769 -64446703 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 348 328 0 0 chr11 84336833 84336955 -64446517 + Charlie8 DNA MER1_type 88 209 -2208 1895 214 84 7 chr11 84337144 84337607 -64445865 + MLT1D LTR MaLR 1 499 -6 868 348 35 6 chr11 84337995 84338337 -64445135 - MER115 DNA AcHobo -318 375 24 306 358 167 0 chr11 84338580 84338742 -64444730 - MIR SINE MIR -25 237 49 274 349 0 9 chr11 84338808 84338914 -64444558 - L2 LINE L2 -20 3293 3189 196 265 0 41 chr11 84339944 84339993 -64443479 - L2 LINE L2 -16 3256 3210 192 228 13 114 chr11 84340032 84340111 -64443361 - L2 LINE L2 -13 3300 3230 676 307 172 21 chr11 84340222 84341046 -64442426 + L2 LINE L2 2365 3312 -1 362 370 48 28 chr11 84342004 84342143 -64441329 - MIR SINE MIR -6 256 108 870 213 5 11 chr11 84342143 84342331 -64441141 - MER5A DNA MER1_type -2 187 1 362 370 48 28 chr11 84342331 84342440 -64441032 - MIR SINE MIR -154 108 3 1889 116 3 14 chr11 84342661 84342945 -64440527 - AluSg SINE Alu -27 283 3 2454 164 12 42 chr11 84343335 84343441 -64440031 + L1PB4 LINE L1 5683 5791 -365 270 0 0 0 chr11 84343441 84343471 -64440001 + (TCTCCC)n Simple_repeat Simple_repeat 2 31 0 4854 84 20 14 chr11 84343475 84344564 -64438908 + SVA Other Other 14 1386 0 2454 164 12 42 chr11 84344564 84344932 -64438540 + L1PB4 LINE L1 5794 6149 -7 222 214 0 0 chr11 84344952 84345008 -64438464 + (TA)n Simple_repeat Simple_repeat 2 57 0 2306 99 0 3 chr11 84345136 84345440 -64438032 - AluY SINE Alu -8 303 1 398 339 71 6 chr11 84345533 84345716 -64437756 + MIR SINE MIR 6 200 -62 2272 96 0 16 chr11 84345742 84346045 -64437427 + AluSg SINE Alu 1 298 -12 554 243 86 92 chr11 84346831 84347123 -64436349 - MER102b DNA MER1_type -3 338 49 607 293 95 36 chr11 84347376 84347598 -64435874 + MIR SINE MIR 18 252 -10 352 313 91 49 chr11 84347884 84348127 -64435345 - L3 LINE CR1 -30 1547 1295 304 329 97 26 chr11 84348705 84348953 -64434519 - L2 LINE L2 -16 3297 2992 625 359 23 15 chr11 84348953 84349212 -64434260 - MIR SINE MIR 0 262 2 2133 118 3 10 chr11 84349847 84350161 -64433311 + AluSx SINE Alu 1 312 0 645 306 70 18 chr11 84350255 84350576 -64432896 + MLT1J2 LTR MaLR 48 394 -56 1678 167 30 4 chr11 84350576 84350846 -64432626 + AluSx SINE Alu 34 310 -2 645 306 70 18 chr11 84350846 84350907 -64432565 + MLT1J2 LTR MaLR 394 450 0 285 283 101 38 chr11 84351115 84351274 -64432198 + MIR SINE MIR 24 192 -70 464 302 167 9 chr11 84351598 84351813 -64431659 + MIR SINE MIR 14 262 0 394 267 53 30 chr11 84352261 84352392 -64431080 + MIR3 SINE MIR 70 203 -5 296 247 82 0 chr11 84352498 84352583 -64430889 - L2 LINE L2 -54 3259 3168 191 275 0 0 chr11 84352742 84352782 -64430690 - L2 LINE L2 -95 3177 3138 28 0 0 0 chr11 84352940 84352968 -64430504 + AT_rich Low_complexity Low_complexity 1 28 0 238 264 75 0 chr11 84352985 84353038 -64430434 - L2 LINE L2 -30 3242 3186 359 290 38 0 chr11 84353093 84353219 -64430253 + MIR SINE MIR 27 155 -58 331 315 165 41 chr11 84353384 84353899 -64429573 + L2 LINE L2 2180 2758 -556 336 333 138 35 chr11 84354030 84354342 -64429130 + L2 LINE L2 2915 3258 -14 182 204 0 20 chr11 84354537 84354586 -64428886 + GA-rich Low_complexity Low_complexity 3 50 0 211 172 16 78 chr11 84355734 84355798 -64427674 + L3b LINE CR1 1331 1390 -193 247 371 71 14 chr11 84355974 84356114 -64427358 - L2 LINE L2 0 3272 3125 671 329 17 31 chr11 84356452 84356805 -64426667 + LTR16B LTR ERVL 117 464 0 267 341 106 10 chr11 84356811 84357113 -64426359 - L2 LINE L2 -526 2788 2458 1187 128 74 133 chr11 84357446 84357853 -64425619 - MLT1B LTR MaLR 0 390 8 1619 197 10 29 chr11 84359408 84359717 -64423755 - AluJo SINE Alu -9 303 1 252 295 66 49 chr11 84360511 84360633 -64422839 + MIR SINE MIR 82 205 -57 261 365 95 14 chr11 84360963 84361185 -64422287 + MIR SINE MIR 3 242 -20 252 328 46 15 chr11 84361648 84361779 -64421693 - MIR SINE MIR -56 206 72 448 323 80 66 chr11 84361903 84362506 -64420966 + MLT1L LTR MaLR 1 611 -4 288 326 61 15 chr11 84362508 84362640 -64420832 - MIR SINE MIR -88 174 37 407 321 16 47 chr11 84362741 84362931 -64420541 + MIR SINE MIR 20 203 -59 817 273 8 43 chr11 84363818 84364071 -64419401 - MIR SINE MIR -12 250 7 357 156 18 75 chr11 84364653 84364791 -64418681 - ORSL DNA AcHobo -8 267 84 412 121 79 6 chr11 84364801 84364966 -64418506 + (TA)n Simple_repeat Simple_repeat 2 178 0 284 253 0 13 chr11 84364966 84365041 -64418431 - ORSL DNA AcHobo -201 74 1 453 345 95 15 chr11 84365273 84365473 -64417999 - MIR SINE MIR -20 242 27 273 304 104 15 chr11 84366174 84366309 -64417163 - MIR SINE MIR -25 237 91 279 279 63 0 chr11 84366460 84366539 -64416933 + L2 LINE L2 3180 3263 -50 374 318 88 84 chr11 84366567 84366910 -64416562 - L2 LINE L2 -25 3247 2904 499 290 75 33 chr11 84367092 84367306 -64416166 - L2 LINE L2 -781 2533 2311 222 37 0 0 chr11 84367666 84367693 -64415779 + (TATG)n Simple_repeat Simple_repeat 1 27 0 960 217 10 30 chr11 84367695 84367898 -64415574 - AluJo SINE Alu -29 283 85 1071 39 0 0 chr11 84368010 84368139 -64415333 - L1PA6 LINE L1 -13 6141 6013 7702 135 25 22 chr11 84369370 84370666 -64412806 + HSMAR2 DNA Mariner 1 1301 -1 191 313 94 0 chr11 84371874 84371938 -64411534 - L2 LINE L2 -9 3263 3194 902 272 34 0 chr11 84372232 84372471 -64411001 + MIR SINE MIR 13 259 -3 488 404 56 13 chr11 84372610 84373004 -64410468 + L2 LINE L2 2434 2844 -470 510 299 188 25 chr11 84373068 84373382 -64410090 + L2 LINE L2 2949 3313 0 595 271 46 50 chr11 84374007 84374269 -64409203 + MIR SINE MIR 1 261 -1 209 267 0 0 chr11 84374401 84374446 -64409026 + CT-rich Low_complexity Low_complexity 1 45 0 565 324 83 89 chr11 84374508 84375123 -64408349 + L1MEd LINE L1 6 616 -5503 352 293 76 51 chr11 84375198 84375889 -64407583 + L1MEd LINE L1 811 1509 -4620 223 154 106 0 chr11 84376402 84376506 -64406966 + (TA)n Simple_repeat Simple_repeat 2 116 0 573 303 66 38 chr11 84376517 84377713 -64405759 + L1MEd LINE L1 2208 3469 -2660 398 289 52 0 chr11 84377913 84378010 -64405462 - L2 LINE L2 -27 3245 3144 348 109 250 0 chr11 84378069 84378133 -64405339 - MADE1 DNA Mariner 0 80 1 264 190 0 81 chr11 84378258 84378332 -64405140 - L1MD3 LINE L1 0 8042 7927 575 204 0 122 chr11 84379523 84379545 -64403927 + MER5B DNA MER1_type 2 25 -153 2257 128 50 8 chr11 84379545 84379905 -64403567 + THE1C LTR MaLR 1 375 0 575 204 0 122 chr11 84379905 84379954 -64403518 + MER5B DNA MER1_type 25 49 -129 2265 50 58 0 chr11 84379954 84380231 -64403241 + AluY SINE Alu 4 296 -15 575 204 0 122 chr11 84380231 84380305 -64403167 + MER5B DNA MER1_type 49 130 -48 407 299 153 0 chr11 84380410 84380567 -64402905 - MER5A DNA MER1_type 0 189 9 21 0 0 0 chr11 84381194 84381215 -64402257 + AT_rich Low_complexity Low_complexity 1 21 0 359 270 99 9 chr11 84381433 84381544 -64401928 + MIR SINE MIR 23 143 -119 381 347 42 21 chr11 84382678 84382871 -64400601 - MIR SINE MIR -18 244 48 297 89 0 0 chr11 84383990 84384035 -64399437 + (CA)n Simple_repeat Simple_repeat 1 45 0 182 384 104 0 chr11 84384273 84384398 -64399074 + MIR SINE MIR 101 238 -24 1171 226 9 49 chr11 84384401 84384728 -64398744 + MLT2C1 LTR ERVL 1 314 -83 345 284 77 19 chr11 84384728 84384883 -64398589 + L3 LINE CR1 1413 1576 -1 362 250 106 8 chr11 84385008 84385140 -64398332 + L1MEc LINE L1 1 145 -5974 1209 257 60 43 chr11 84385304 84385720 -64397752 - L2 LINE L2 -1067 2247 1825 395 245 42 47 chr11 84385720 84385932 -64397540 + L1MC5 LINE L1 7366 7576 -385 4290 154 71 4 chr11 84386032 84386806 -64396666 + LTR1B LTR ERV1 1 826 0 303 381 52 0 chr11 84387011 84387166 -64396306 + L1MEc LINE L1 574 736 -5383 491 294 118 41 chr11 84387177 84387675 -64395797 + L1MEc LINE L1 1107 1627 -863 342 318 48 36 chr11 84388349 84388789 -64394683 + L1MEc LINE L1 2459 2903 -3226 180 176 0 0 chr11 84388790 84388824 -64394648 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 1221 114 0 17 chr11 84388998 84389174 -64394298 + AluYa5 SINE Alu 139 311 0 345 297 97 22 chr11 84389176 84389445 -64394027 + L1MEc LINE L1 3013 3301 -2828 356 295 114 7 chr11 84390431 84390580 -64392892 - MIR SINE MIR -76 186 22 251 348 0 0 chr11 84391257 84391326 -64392146 + L2 LINE L2 3204 3272 0 2279 97 0 0 chr11 84391326 84391616 -64391856 + AluSg SINE Alu 2 291 -19 231 287 0 64 chr11 84392564 84392658 -64390814 - L2 LINE L2 -3 3310 3223 361 312 29 7 chr11 84393180 84393318 -64390154 - MIR SINE MIR -16 246 106 259 333 9 9 chr11 84393999 84394107 -64389365 - MIR SINE MIR -80 128 21 197 388 131 16 chr11 84394800 84395045 -64388427 + L2 LINE L2 2473 2745 -569 501 47 0 0 chr11 84395356 84395420 -64388052 + (TG)n Simple_repeat Simple_repeat 2 65 0 1917 103 11 4 chr11 84395448 84395709 -64387763 - AluY SINE Alu -10 301 39 315 232 120 24 chr11 84395748 84395873 -64387599 - MIR SINE MIR -13 249 113 337 221 189 0 chr11 84395890 84396012 -64387460 + L1ME4a LINE L1 5961 6105 -16 237 228 0 18 chr11 84396037 84396094 -64387378 + MIR SINE MIR 176 231 -31 432 332 105 13 chr11 84396337 84396575 -64386897 - MIR SINE MIR -1 261 2 295 266 202 0 chr11 84396713 84396807 -64386665 - MIR SINE MIR -122 140 28 727 282 139 23 chr11 84398201 84398485 -64384987 - L2 LINE L2 -814 2500 2148 198 0 0 0 chr11 84398485 84398507 -64384965 + (ATGTG)n Simple_repeat Simple_repeat 3 24 0 727 282 139 23 chr11 84398507 84398654 -64384818 - L2 LINE L2 -1166 2148 2019 397 306 98 11 chr11 84398687 84398870 -64384602 - MIR SINE MIR -27 235 37 488 308 57 15 chr11 84398954 84399168 -64384304 - MIR SINE MIR -37 225 6 272 298 9 61 chr11 84399686 84399800 -64383672 - MIR SINE MIR -110 152 45 234 0 0 0 chr11 84399831 84399857 -64383615 + (T)n Simple_repeat Simple_repeat 1 26 0 363 302 34 20 chr11 84400154 84400452 -64383020 + AluSx SINE Alu 1 302 0 10148 219 25 18 chr11 84400590 84404012 -64379460 - L1 LINE L1 -1481 5367 1907 1676 127 52 10 chr11 84404015 84404306 -64379166 - AluSx SINE Alu 0 312 10 202 289 9 35 chr11 84404511 84404625 -64378847 + G-rich Low_complexity Low_complexity 5 115 0 24 32 0 0 chr11 84405037 84405068 -64378404 + AT_rich Low_complexity Low_complexity 1 31 0 350 219 124 36 chr11 84405143 84405280 -64378192 - L1ME4a LINE L1 -237 5884 5736 627 294 17 0 chr11 84405628 84405808 -64377664 + MIR SINE MIR 80 262 0 240 296 112 16 chr11 84405978 84406103 -64377369 + MIR SINE MIR 69 205 -57 2324 73 3 7 chr11 84406124 84406426 -64377046 - AluY SINE Alu -10 301 1 235 264 56 64 chr11 84406530 84406655 -64376817 + L2 LINE L2 3158 3281 -32 1519 214 3 3 chr11 84406675 84406964 -64376508 - AluJo SINE Alu -17 295 7 5138 23 0 2 chr11 84407473 84408073 -64375399 - L1PA2 LINE L1 -3 6152 5554 294 329 0 0 chr11 84408930 84409012 -64374460 + MIR SINE MIR 149 230 -32 6330 37 0 0 chr11 84409571 84410322 -64373150 - L1PA5 LINE L1 -4 6150 5400 184 128 26 26 chr11 84410420 84410459 -64373013 + L3 LINE CR1 1128 1166 -411 252 374 0 9 chr11 84410512 84410619 -64372853 - MLT1J LTR MaLR -202 309 204 363 331 14 14 chr11 84410685 84410830 -64372642 - MIR SINE MIR -116 146 2 268 307 9 61 chr11 84410843 84410957 -64372515 - L2 LINE L2 -232 3040 2933 595 283 69 0 chr11 84412030 84412203 -64371269 + LTR33 LTR ERVL 1 185 -336 504 296 127 5 chr11 84412253 84412473 -64370999 + LTR33 LTR ERVL 275 521 0 245 308 101 35 chr11 84412709 84412878 -64370594 - MIR SINE MIR -32 230 51 269 83 83 0 chr11 84413371 84413455 -64370017 + (TA)n Simple_repeat Simple_repeat 2 92 0 377 117 73 0 chr11 84413469 84413606 -64369866 + (TA)n Simple_repeat Simple_repeat 2 148 0 201 119 48 0 chr11 84413638 84413680 -64369792 + (TA)n Simple_repeat Simple_repeat 2 45 0 1626 234 0 19 chr11 84413741 84414112 -64369360 + MLT1A1 LTR MaLR 1 364 -1 353 299 97 14 chr11 84415266 84415410 -64368062 + MIR SINE MIR 106 261 -1 337 338 46 20 chr11 84415551 84415702 -64367770 + MIR SINE MIR 2 156 -106 6650 131 61 11 chr11 84415761 84416933 -64366539 - Tigger3b DNA MER2_type 0 1231 1 934 243 37 9 chr11 84417526 84417740 -64365732 - MIR SINE MIR -25 237 18 365 370 39 67 chr11 84418679 84419038 -64364434 - L2 LINE L2 -2 3270 2922 219 284 102 11 chr11 84419336 84419424 -64364048 + MIR SINE MIR 48 143 -65 277 252 131 9 chr11 84419499 84419606 -64363866 - L2 LINE L2 0 3313 3194 222 213 21 0 chr11 84419609 84419656 -64363816 + L2 LINE L2 3262 3309 -4 538 277 75 21 chr11 84419835 84420023 -64363449 + L2 LINE L2 3109 3306 -7 185 293 49 37 chr11 84420071 84420153 -64363319 + L3 LINE CR1 1491 1573 -4 22 35 0 0 chr11 84422149 84422178 -64361294 + AT_rich Low_complexity Low_complexity 1 29 0 193 361 83 0 chr11 84422705 84422777 -64360695 - MIR SINE MIR -165 97 20 397 312 80 0 chr11 84422881 84423006 -64360466 - MIR SINE MIR -109 153 19 33 25 0 0 chr11 84423158 84423198 -64360274 + AT_rich Low_complexity Low_complexity 1 40 0 243 267 40 0 chr11 84423359 84423434 -64360038 - MER103 DNA DNA -63 103 26 277 246 222 18 chr11 84423776 84423943 -64359529 + MIR SINE MIR 38 238 -24 27 62 0 0 chr11 84423948 84423996 -64359476 + AT_rich Low_complexity Low_complexity 1 48 0 11869 232 42 32 chr11 84423999 84425572 -64357900 - L1PA16 LINE L1 -14 6855 5299 387 0 0 0 chr11 84425572 84425615 -64357857 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 11869 232 42 32 chr11 84425615 84427372 -64356100 - L1PA16 LINE L1 -1570 5299 3561 207 0 0 0 chr11 84427372 84427395 -64356077 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 11869 232 42 32 chr11 84427395 84427601 -64355871 - L1PA16 LINE L1 -3308 3561 3359 180 0 0 0 chr11 84427601 84427621 -64355851 + (TTG)n Simple_repeat Simple_repeat 2 21 0 11869 232 42 32 chr11 84427621 84427756 -64355716 - L1PA16 LINE L1 -3510 3359 3227 1209 46 0 0 chr11 84427756 84427908 -64355564 - L1PA4 LINE L1 -3 6152 6001 11869 232 42 32 chr11 84427908 84429444 -64354028 - L1PA16 LINE L1 -3642 3227 1414 940 220 0 0 chr11 84429832 84430023 -64353449 - L1PA16 LINE L1 -5324 1526 1336 * 2246 224 36 11 chr11 84430013 84430486 -64352986 - L1PA16 LINE L1 -5290 1559 1075 2373 129 6 6 chr11 84430645 84431008 -64352464 - THE1B LTR MaLR -1 363 1 10122 118 38 7 chr11 84431008 84432540 -64350932 - THE1B-int LTR MaLR 0 1580 1 2455 111 11 3 chr11 84432540 84432901 -64350571 - THE1B LTR MaLR 0 364 1 248 233 33 17 chr11 84433299 84433359 -64350113 - MIR SINE MIR -75 133 72 275 350 43 17 chr11 84433428 84433545 -64349927 + L2 LINE L2 3183 3302 -11 629 283 89 36 chr11 84433953 84434257 -64349215 - L2 LINE L2 -445 2869 2550 2277 96 3 0 chr11 84434298 84434599 -64348873 + AluSp SINE Alu 1 302 -11 220 306 177 8 chr11 84434733 84434857 -64348615 + L2 LINE L2 3169 3313 0 329 313 102 8 chr11 84435832 84435960 -64347512 + MIR SINE MIR 59 198 -64 1582 192 18 0 chr11 84437110 84437409 -64346063 - AluJo SINE Alu 0 307 4 348 24 0 0 chr11 84437659 84437700 -64345772 + (CA)n Simple_repeat Simple_repeat 2 42 0 21 36 0 0 chr11 84437861 84437889 -64345583 + AT_rich Low_complexity Low_complexity 1 28 0 323 301 96 22 chr11 84439173 84439309 -64344163 - MIR SINE MIR -104 158 13 398 272 82 14 chr11 84439552 84439699 -64343773 - MER5B DNA MER1_type 0 178 22 216 97 0 0 chr11 84440893 84440924 -64342548 + (TTTTC)n Simple_repeat Simple_repeat 2 32 0 2373 110 0 0 chr11 84441126 84441435 -64342037 - AluSq SINE Alu -4 309 1 1898 149 55 0 chr11 84442432 84442721 -64340751 - AluSx SINE Alu -7 305 1 2082 263 24 27 chr11 84444555 84445178 -64338294 - MLT1E2 LTR MaLR 0 626 6 259 194 140 65 chr11 84445448 84445541 -64337931 - L2 LINE L2 -87 3226 3127 211 328 16 0 chr11 84446309 84446370 -64337102 + MIR SINE MIR 90 151 -57 26 0 0 0 chr11 84446670 84446696 -64336776 + AT_rich Low_complexity Low_complexity 1 26 0 251 330 62 18 chr11 84446730 84446842 -64336630 - L2 LINE L2 -15 3257 3141 286 298 95 0 chr11 84448651 84448735 -64334737 + L2 LINE L2 3140 3231 -41 425 315 79 43 chr11 84448748 84448981 -64334491 - MIR SINE MIR -1 261 19 199 330 236 9 chr11 84449273 84449379 -64334093 - L2 LINE L2 -18 3254 3125 2626 52 0 0 chr11 84449406 84449715 -64333757 + AluY SINE Alu 1 309 -2 447 19 0 0 chr11 84449970 84450022 -64333450 + (TG)n Simple_repeat Simple_repeat 1 52 0 23 0 0 0 chr11 84450246 84450269 -64333203 + AT_rich Low_complexity Low_complexity 1 23 0 1991 130 52 68 chr11 84450607 84450767 -64332705 + THE1B LTR MaLR 1 162 -202 1897 130 3 11 chr11 84450767 84451051 -64332421 - AluSg SINE Alu -28 282 1 1991 130 52 68 chr11 84451051 84451259 -64332213 + THE1B LTR MaLR 162 363 -1 2229 110 7 0 chr11 84451525 84451834 -64331638 - AluSp SINE Alu -2 311 1 2302 123 64 0 chr11 84452686 84453028 -64330444 - THE1B LTR MaLR 0 364 1 264 30 0 0 chr11 84453171 84453204 -64330268 + (A)n Simple_repeat Simple_repeat 1 33 0 2910 172 62 26 chr11 84453302 84453883 -64329589 + MER6A DNA MER2_type 2 603 -2 192 250 33 17 chr11 84454887 84454947 -64328525 + MIR SINE MIR 30 90 -118 304 333 52 46 chr11 84455165 84455339 -64328133 + MIR SINE MIR 88 262 0 1810 184 69 3 chr11 84455341 84455688 -64327784 - MER68 LTR ERV1 -187 375 6 217 178 27 55 chr11 84455743 84455816 -64327656 + T-rich Low_complexity Low_complexity 5 75 0 21 0 0 0 chr11 84456054 84456075 -64327397 + AT_rich Low_complexity Low_complexity 1 21 0 630 235 123 19 chr11 84456222 84456441 -64327031 + MIR SINE MIR 20 262 0 208 178 111 0 chr11 84456587 84456632 -64326840 + MIR3 SINE MIR 153 202 -6 1196 199 28 66 chr11 84456711 84457028 -64326444 + MLT1A2 LTR MaLR 70 374 0 633 207 26 0 chr11 84457570 84457686 -64325786 + FLAM_A SINE Alu 1 119 -14 501 343 48 20 chr11 84458585 84458833 -64324639 + MIR SINE MIR 2 256 -6 240 86 0 0 chr11 84458837 84458872 -64324600 + (ATG)n Simple_repeat Simple_repeat 1 35 0 467 293 5 24 chr11 84458902 84458926 -64324546 + L1MEc LINE L1 2933 2956 -4609 1701 162 30 19 chr11 84458926 84459297 -64324175 - L1MA7 LINE L1 0 6291 5917 467 293 5 24 chr11 84459297 84459477 -64323995 + L1MEc LINE L1 2956 3114 -4451 280 387 49 7 chr11 84459727 84459869 -64323603 - MIR3 SINE MIR -60 148 1 672 312 130 39 chr11 84459896 84460638 -64322834 - L2 LINE L2 -42 3271 2432 702 371 35 17 chr11 84460644 84461183 -64322289 + L2 LINE L2 2127 2675 -639 342 299 109 15 chr11 84461239 84461376 -64322096 + L2 LINE L2 3123 3272 0 253 385 7 20 chr11 84461730 84461878 -64321594 - L2 LINE L2 -213 3059 2914 253 367 8 17 chr11 84462184 84462304 -64321168 - L2 LINE L2 -4 3268 3150 187 167 0 37 chr11 84462922 84462976 -64320496 + GA-rich Low_complexity Low_complexity 1 52 0 884 301 19 0 chr11 84463140 84463356 -64320116 - MIR SINE MIR -15 247 28 182 303 15 30 chr11 84463650 84463716 -64319756 - L2 LINE L2 -4 3309 3245 312 306 116 7 chr11 84464638 84464785 -64318687 + MIR SINE MIR 8 170 -92 2084 109 0 59 chr11 84465439 84465761 -64317711 + AluSg SINE Alu 1 303 -7 2082 252 65 33 chr11 84466027 84466782 -64316690 + L1MC4a LINE L1 7026 7804 -4 2341 92 0 13 chr11 84467072 84467387 -64316085 - AluY SINE Alu 0 311 1 280 385 40 14 chr11 84467694 84467842 -64315630 + L2 LINE L2 3078 3229 -43 300 274 161 65 chr11 84468393 84468579 -64314893 + MIR SINE MIR 47 250 -12 1659 260 172 26 chr11 84468714 84469399 -64314073 - LTR50 LTR ERVL -9 786 2 267 36 71 36 chr11 84469437 84469493 -64313979 + A-rich Low_complexity Low_complexity 4 61 0 282 297 59 8 chr11 84470023 84470141 -64313331 - MIR SINE MIR -55 207 84 284 380 49 13 chr11 84470162 84470386 -64313086 + MIR SINE MIR 4 235 -27 290 301 88 0 chr11 84471393 84471506 -64311966 - MIR SINE MIR -74 188 66 2124 113 0 7 chr11 84471683 84471997 -64311475 - AluSg SINE Alu 0 312 1 2256 148 32 44 chr11 84472050 84472481 -64310991 - MSTB LTR MaLR 0 426 1 350 257 132 56 chr11 84473295 84473439 -64310033 - MIR3 SINE MIR -11 197 43 13485 151 17 29 chr11 84473877 84473990 -64309482 + Tigger2 DNA MER2_type 2 115 -2603 2360 94 0 0 chr11 84473990 84474289 -64309183 + AluY SINE Alu 1 299 -12 13485 151 17 29 chr11 84474289 84476736 -64306736 + Tigger2 DNA MER2_type 115 2530 -188 28 48 0 0 chr11 84476743 84476785 -64306687 + AT_rich Low_complexity Low_complexity 1 42 0 966 138 46 178 chr11 84476785 84477111 -64306361 + Tigger2 DNA MER2_type 2436 2718 0 1225 227 41 7 chr11 84477122 84477417 -64306055 + MLT1A1 LTR MaLR 61 365 0 516 349 88 29 chr11 84479386 84479865 -64303607 - L2 LINE L2 -374 2940 2434 456 293 14 99 chr11 84480569 84480791 -64302681 + MIR SINE MIR 21 223 -39 6068 150 58 22 chr11 84480801 84481539 -64301933 + Tigger3b DNA MER2_type 1 800 -2228 1419 190 45 14 chr11 84481539 84481705 -64301767 - AluJo SINE Alu -14 298 118 213 39 0 0 chr11 84481705 84481731 -64301741 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1419 190 45 14 chr11 84481731 84481853 -64301619 - AluJo SINE Alu -194 118 1 6068 150 58 22 chr11 84481853 84482301 -64301171 + Tigger3b DNA MER2_type 800 1230 -1 243 325 41 32 chr11 84482485 84482608 -64300864 + L2 LINE L2 3187 3310 -3 365 315 0 27 chr11 84482977 84483123 -64300349 + MER3 DNA MER1_type 1 142 -67 23 78 0 0 chr11 84484011 84484062 -64299410 + AT_rich Low_complexity Low_complexity 1 51 0 186 238 12 119 chr11 84484186 84484270 -64299202 + L2 LINE L2 3196 3270 -2 220 137 39 0 chr11 84484341 84484392 -64299080 + (TA)n Simple_repeat Simple_repeat 1 53 0 453 187 222 30 chr11 84484431 84484629 -64298843 + L1ME LINE L1 5258 5493 -673 205 339 0 0 chr11 84484629 84484685 -64298787 - L2 LINE L2 -59 3254 3199 722 167 0 43 chr11 84484720 84484858 -64298614 + FLAM_C SINE Alu 2 133 0 204 67 0 0 chr11 84485159 84485189 -64298283 + (A)n Simple_repeat Simple_repeat 1 30 0 428 304 41 23 chr11 84485820 84485991 -64297481 - MIR SINE MIR -57 205 32 2311 102 7 0 chr11 84486832 84487125 -64296347 - AluSg SINE Alu -15 295 1 2186 88 0 3 chr11 84487660 84487943 -64295529 - AluSx SINE Alu -20 292 11 296 305 51 79 chr11 84488166 84488343 -64295129 - MER5A DNA MER1_type 0 189 18 1362 193 81 181 chr11 84488976 84489944 -64293528 + LTR1B LTR ERV1 3 1020 0 229 327 97 0 chr11 84490074 84490187 -64293285 + MIR SINE MIR 83 206 -56 263 287 34 80 chr11 84490337 84490488 -64292984 - MIR3 SINE MIR -40 168 46 340 261 126 45 chr11 84490745 84490944 -64292528 + MIR SINE MIR 48 262 0 1817 180 0 7 chr11 84490954 84491249 -64292223 - AluJb SINE Alu -19 293 1 21 57 0 0 chr11 84491751 84491786 -64291686 + AT_rich Low_complexity Low_complexity 1 35 0 269 376 0 30 chr11 84492108 84492241 -64291231 - MIR3 SINE MIR -77 131 3 359 322 90 28 chr11 84492657 84492868 -64290604 - MLT1L LTR MaLR -222 393 170 24 0 0 0 chr11 84493000 84493024 -64290448 + AT_rich Low_complexity Low_complexity 1 24 0 204 40 0 0 chr11 84493067 84493092 -64290380 + (CA)n Simple_repeat Simple_repeat 2 26 0 337 319 44 20 chr11 84493097 84493301 -64290171 + L1MC/D LINE L1 5453 5661 -2147 233 246 16 16 chr11 84493306 84493367 -64290105 - L2 LINE L2 -69 3244 3184 1947 155 3 0 chr11 84493960 84494257 -64289215 + AluSx SINE Alu 1 298 -14 977 280 37 9 chr11 84494744 84495094 -64288378 - L1MEc LINE L1 -5901 495 136 812 328 85 36 chr11 84495101 84495898 -64287574 - L1M4 LINE L1 -1427 4719 3884 193 340 0 0 chr11 84496370 84496423 -64287049 + L2 LINE L2 2922 2974 -340 360 207 61 0 chr11 84496639 84496721 -64286751 + MLT1A1 LTR MaLR 1 87 -278 1227 109 0 0 chr11 84496722 84496878 -64286594 + AluSp SINE Alu 139 294 -19 1107 197 48 0 chr11 84496909 84497137 -64286335 + MLT1A1 LTR MaLR 127 365 0 2259 119 0 0 chr11 84497289 84497592 -64285880 - AluSc SINE Alu 0 309 7 182 309 15 29 chr11 84497885 84497953 -64285519 + L2 LINE L2 3232 3298 -15 413 422 35 0 chr11 84498028 84498258 -64285214 + L3 LINE CR1 1336 1573 -4 42 36 0 0 chr11 84498719 84498775 -64284697 + AT_rich Low_complexity Low_complexity 1 56 0 495 0 0 0 chr11 84499498 84499553 -64283919 + (TG)n Simple_repeat Simple_repeat 2 56 0 288 212 327 0 chr11 84499731 84499844 -64283628 + MIR SINE MIR 110 259 -3 376 217 25 75 chr11 84500354 84500402 -64283070 + MER81 DNA DNA 1 50 -64 2187 126 3 0 chr11 84500402 84500703 -64282769 - AluSc SINE Alu -7 302 1 376 217 25 75 chr11 84500703 84500774 -64282698 + MER81 DNA DNA 50 114 0 481 286 31 94 chr11 84501265 84501319 -64282153 - MIR SINE MIR 0 262 206 1711 189 3 25 chr11 84501319 84501636 -64281836 - AluJo SINE Alu -2 310 1 481 286 31 94 chr11 84501636 84501836 -64281636 - MIR SINE MIR -56 206 24 331 299 7 87 chr11 84502129 84502282 -64281190 + MIR SINE MIR 7 147 -61 257 219 110 0 chr11 84502923 84502996 -64280476 - MLT1L LTR MaLR -518 97 17 183 222 44 0 chr11 84504421 84504466 -64279006 - MIR SINE MIR -155 107 61 387 0 0 0 chr11 84504470 84504513 -64278959 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1320 180 5 5 chr11 84504616 84504827 -64278645 - AluJb SINE Alu -101 211 1 530 168 186 0 chr11 84505090 84505203 -64278269 - FRAM SINE Alu -18 158 25 438 315 42 15 chr11 84505400 84505567 -64277905 - MIR3 SINE MIR -60 148 1 333 263 30 20 chr11 84505567 84505657 -64277815 + MIR3 SINE MIR 75 165 -43 351 328 76 6 chr11 84505704 84505875 -64277597 - MIR SINE MIR -57 205 23 653 302 28 9 chr11 84506828 84507040 -64276432 + MIR SINE MIR 13 228 -34 202 205 0 0 chr11 84507249 84507288 -64276184 + (TTG)n Simple_repeat Simple_repeat 1 39 0 180 299 73 44 chr11 84507698 84507835 -64275637 + MIR SINE MIR 59 199 -63 257 309 0 0 chr11 84507965 84508049 -64275423 + GA-rich Low_complexity Low_complexity 1 84 0 487 252 64 1 chr11 84508895 84509041 -64274431 - MIR SINE MIR -62 146 2 788 215 23 6 chr11 84509407 84509579 -64273893 - MER5B DNA MER1_type -3 175 1 764 127 13 25 chr11 84509684 84509842 -64273630 + CT-rich Low_complexity Low_complexity 1 156 0 1973 151 0 6 chr11 84509925 84510236 -64273236 - AluSx SINE Alu -3 309 1 3335 126 38 10 chr11 84510372 84510721 -64272751 - LTR49 LTR ERV1 0 595 222 186 103 0 0 chr11 84510721 84510750 -64272722 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3335 126 38 10 chr11 84510750 84510979 -64272493 - LTR49 LTR ERV1 -373 222 1 196 253 51 51 chr11 84511985 84512064 -64271408 + MIR SINE MIR 91 169 -93 588 282 6 19 chr11 84513164 84513320 -64270152 - MER5A DNA MER1_type -3 186 33 389 311 90 0 chr11 84513521 84513643 -64269829 - MIR3 SINE MIR -69 139 7 235 182 0 36 chr11 84514092 84514147 -64269325 - L2 LINE L2 -3 3269 3217 289 345 8 17 chr11 84514512 84514631 -64268841 - L2 LINE L2 -509 2805 2688 342 303 74 62 chr11 84514801 84514963 -64268509 - L2 LINE L2 -4 3309 3146 213 120 40 20 chr11 84515004 84515054 -64268418 + (TA)n Simple_repeat Simple_repeat 1 51 0 313 110 85 110 chr11 84515154 84515236 -64268236 - MADE1 DNA Mariner 0 80 1 213 39 0 0 chr11 84515550 84515576 -64267896 + (T)n Simple_repeat Simple_repeat 1 26 0 221 314 57 48 chr11 84515882 84515987 -64267485 - L3 LINE CR1 -18 1559 1454 297 378 42 7 chr11 84516014 84516161 -64267311 + MIR3 SINE MIR 14 166 -63 601 358 57 3 chr11 84516283 84516582 -64266890 - LTR16B LTR ERVL -140 324 10 263 367 103 46 chr11 84516590 84517231 -64266241 - L2 LINE L2 -196 3076 2403 1552 214 33 0 chr11 84517465 84517824 -64265648 - MER63 DNA MER1_type 0 1062 692 336 192 14 0 chr11 84517891 84517964 -64265508 - MER105 DNA DNA -106 98 25 228 86 0 0 chr11 84519452 84519487 -64263985 + (TG)n Simple_repeat Simple_repeat 2 36 0 3467 189 24 76 chr11 84521503 84522092 -64261380 - Charlie2 DNA MER1_type 0 2862 2301 225 196 0 0 chr11 84522092 84522138 -64261334 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 3467 189 24 76 chr11 84522138 84522539 -64260933 - Charlie2 DNA MER1_type -561 2301 1881 307 257 62 88 chr11 84522567 84522793 -64260679 - Charlie2 DNA MER1_type -2461 321 102 1916 96 43 25 chr11 84522910 84523228 -64260244 - AluSx SINE Alu 0 323 1 975 198 69 46 chr11 84523311 84523614 -64259858 - MER33 DNA MER1_type -14 310 1 238 310 70 0 chr11 84525061 84525132 -64258340 + L2 LINE L2 3196 3271 -1 389 318 127 6 chr11 84525894 84526067 -64257405 - MIR SINE MIR -18 244 51 850 218 63 5 chr11 84526188 84526394 -64257078 + MER20 DNA MER1_type 1 218 -1 21 0 0 0 chr11 84526470 84526491 -64256981 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr11 84526870 84526906 -64256566 + AT_rich Low_complexity Low_complexity 1 36 0 216 285 65 17 chr11 84527223 84527313 -64256159 - MIR SINE MIR -76 132 41 480 319 96 32 chr11 84527356 84527701 -64255771 + LTR33 LTR ERVL 61 427 -94 6012 95 31 0 chr11 84527706 84528957 -64254515 - L1PA14 LINE L1 0 6161 4873 24 54 0 18 chr11 84529278 84529296 -64254176 + AT_rich Low_complexity Low_complexity 1 18 -37 789 114 0 0 chr11 84529296 84529419 -64254053 + L1MA8 LINE L1 6164 6286 -5 24 54 0 18 chr11 84529419 84529456 -64254016 + AT_rich Low_complexity Low_complexity 18 55 0 1635 163 13 61 chr11 84529893 84530206 -64253266 - AluJo SINE Alu -9 303 6 197 196 107 0 chr11 84530920 84530976 -64252496 + MIR SINE MIR 125 186 -76 1907 139 50 36 chr11 84531479 84531838 -64251634 - THE1B LTR MaLR 0 364 1 8812 121 3 1 chr11 84531838 84533080 -64250392 - THE1B-int LTR MaLR 0 1580 336 1509 113 13 0 chr11 84533076 84533307 -64250165 - THE1B-int LTR MaLR -1346 234 1 * 2261 104 48 22 chr11 84533307 84533662 -64249810 - THE1B LTR MaLR 0 364 1 201 308 183 10 chr11 84533882 84533986 -64249486 + MIR SINE MIR 72 193 -69 266 275 150 57 chr11 84534721 84534914 -64248558 + MIR SINE MIR 23 233 -29 220 183 0 28 chr11 84535926 84535997 -64247475 + CT-rich Low_complexity Low_complexity 2 70 0 1657 173 170 14 chr11 84536567 84536937 -64246535 - MSTA LTR MaLR 0 428 1 509 260 39 67 chr11 84536959 84537146 -64246326 + MIR SINE MIR 2 189 -73 193 189 0 0 chr11 84537223 84537260 -64246212 - MIR SINE MIR -124 138 102 359 310 169 16 chr11 84537781 84538023 -64245449 + MLT1J2 LTR MaLR 48 326 -124 265 250 11 22 chr11 84538402 84538494 -64244978 + (TA)n Simple_repeat Simple_repeat 2 92 0 231 292 106 26 chr11 84538830 84538943 -64244529 - L2 LINE L2 -12 3260 3139 6246 190 54 21 chr11 84539976 84541376 -64242096 + Charlie1a DNA MER1_type 8 1452 -3 259 302 158 22 chr11 84541429 84541568 -64241904 + MIR SINE MIR 62 219 -43 905 314 41 19 chr11 84542403 84542817 -64240655 - HsTC2 DNA Tc2 -1008 890 468 350 108 27 81 chr11 84542806 84542880 -64240592 - HsTC2 DNA Tc2 -1606 292 223 * 217 203 0 27 chr11 84543186 84543260 -64240212 + (CATATA)n Simple_repeat Simple_repeat 3 74 0 525 268 68 5 chr11 84544057 84544247 -64239225 - L1ME3 LINE L1 -2 6160 5959 420 111 0 0 chr11 84544441 84544504 -64238968 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 291 381 9 0 chr11 84544505 84544610 -64238862 - MIR SINE MIR -124 138 33 195 208 42 83 chr11 84545892 84545964 -64237508 - MIR SINE MIR -118 144 76 541 302 102 61 chr11 84546062 84546579 -64236893 - L2 LINE L2 -1 3271 2737 1271 274 55 42 chr11 84546621 84547478 -64235994 + L1ME LINE L1 4675 5571 -595 231 309 48 32 chr11 84547502 84547628 -64235844 + MLT1H LTR MaLR 3 130 -419 22 70 0 0 chr11 84548401 84548444 -64235028 + AT_rich Low_complexity Low_complexity 1 43 0 688 325 106 7 chr11 84548475 84548890 -64234582 - L2 LINE L2 -658 2656 2201 238 350 15 29 chr11 84548937 84549074 -64234398 + MIR SINE MIR 72 206 -56 247 304 40 15 chr11 84550135 84550232 -64233240 + MIR SINE MIR 43 141 -67 272 250 15 0 chr11 84550236 84550304 -64233168 + (CAT)n Simple_repeat Simple_repeat 1 69 0 260 326 92 0 chr11 84551453 84551551 -64231921 - MIR SINE MIR 0 262 156 25 0 0 0 chr11 84551654 84551679 -64231793 + AT_rich Low_complexity Low_complexity 1 25 0 364 259 102 46 chr11 84551814 84552011 -64231461 - Charlie8 DNA MER1_type -2133 284 77 412 345 30 10 chr11 84552127 84552327 -64231145 + MIR SINE MIR 5 208 -54 201 391 36 7 chr11 84552427 84552565 -64230907 - L2 LINE L2 -212 3060 2919 418 313 107 13 chr11 84553039 84553263 -64230209 + MIR SINE MIR 12 256 -6 2210 166 42 35 chr11 84553810 84554292 -64229180 + MER66B LTR ERV1 2 486 0 439 281 54 36 chr11 84555548 84555715 -64227757 - MIR SINE MIR 0 262 93 218 289 94 55 chr11 84555834 84555962 -64227510 - MIR3 SINE MIR -63 145 13 246 262 94 94 chr11 84556031 84556180 -64227292 + MIR SINE MIR 94 242 -20 239 295 0 13 chr11 84556474 84556552 -64226920 - LTR33A LTR ERVL 0 523 447 333 354 20 0 chr11 84556896 84556995 -64226477 - LTR67 LTR ERVL -358 199 99 285 29 0 0 chr11 84557053 84557087 -64226385 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 4998 39 0 2 chr11 84557087 84557685 -64225787 - L1PA4 LINE L1 -16 6139 5543 535 205 0 9 chr11 84557727 84557839 -64225633 - L1MA10 LINE L1 -63 6271 6161 9151 202 37 86 chr11 84557900 84560499 -64222973 - L1MA9 LINE L1 -159 6217 3494 360 0 0 0 chr11 84560499 84560539 -64222933 + (TG)n Simple_repeat Simple_repeat 2 41 0 9151 202 37 86 chr11 84560539 84561822 -64221650 - L1MA9 LINE L1 -2882 3494 2559 861 144 6 29 chr11 84561822 84561995 -64221477 + L1PA13 LINE L1 5993 6161 -2 9151 202 37 86 chr11 84561995 84562347 -64221125 - L1MA9 LINE L1 -3817 2559 2192 4210 57 2 2 chr11 84562338 84562968 -64220504 - L1PA6 LINE L1 -360 5794 5165 * 2733 68 0 0 chr11 84562968 84563320 -64220152 + L1PA6 LINE L1 5801 6153 -1 2624 268 42 27 chr11 84563320 84565406 -64218066 - L1MA9 LINE L1 -4002 2208 11 197 294 59 12 chr11 84566097 84566182 -64217290 + MIR SINE MIR 85 173 -89 355 348 43 0 chr11 84566221 84566336 -64217136 + MIR SINE MIR 13 132 -130 23 0 0 0 chr11 84566441 84566464 -64217008 + AT_rich Low_complexity Low_complexity 1 23 0 262 400 44 7 chr11 84566559 84566694 -64216778 + L2 LINE L2 3133 3272 0 234 373 42 0 chr11 84566974 84567116 -64216356 + MIR3 SINE MIR 29 176 -32 473 280 193 19 chr11 84567191 84567557 -64215915 + L2 LINE L2 2700 3127 -186 3399 29 0 0 chr11 84567612 84568158 -64215314 - L1PA3 LINE L1 -628 5527 4982 5080 35 0 0 chr11 84568158 84568757 -64214715 + L1PA3 LINE L1 5552 6155 0 390 327 56 86 chr11 84568762 84569157 -64214315 - L2 LINE L2 -15 3257 2875 494 247 132 17 chr11 84570200 84570374 -64213098 - MIR SINE MIR -1 261 68 2089 130 0 3 chr11 84570378 84570685 -64212787 + AluSg SINE Alu 1 306 -4 197 270 32 0 chr11 84570857 84570920 -64212552 + MIR SINE MIR 130 194 -68 195 302 94 21 chr11 84570982 84571078 -64212394 - MIR SINE MIR -109 153 51 291 351 90 0 chr11 84571680 84571791 -64211681 - L2 LINE L2 -5 3267 3147 380 297 146 32 chr11 84572047 84572266 -64211206 - MIR SINE MIR -17 245 2 1391 137 0 41 chr11 84572391 84572661 -64210811 + L1MA4 LINE L1 6036 6294 -6 205 219 154 136 chr11 84572722 84572891 -64210581 + MIR3 SINE MIR 32 203 -5 614 270 0 0 chr11 84573591 84573717 -64209755 + MIR SINE MIR 27 152 -110 3780 250 61 28 chr11 84573717 84575556 -64207916 + L1MDa LINE L1 2 1968 -4572 264 100 0 0 chr11 84575608 84575648 -64207824 + (GA)n Simple_repeat Simple_repeat 1 40 0 1139 213 82 0 chr11 84575674 84575965 -64207507 - L1MDa LINE L1 -4225 2315 2001 3689 189 50 33 chr11 84575974 84576273 -64207199 + L1MD1 LINE L1 4966 5258 -984 2441 76 0 0 chr11 84576273 84576576 -64206896 - AluY SINE Alu -8 303 1 3689 189 50 33 chr11 84576576 84577430 -64206042 + L1MD1 LINE L1 5258 6137 -105 2255 86 0 0 chr11 84577430 84577757 -64205715 - pTR5 LTR ERV1 -2046 392 66 386 260 32 0 chr11 84577757 84577880 -64205592 - LTR30 LTR ERV1 -80 642 516 4305 139 55 31 chr11 84577880 84578869 -64204603 - pTR5 LTR ERV1 -438 2000 743 356 200 27 27 chr11 84578870 84578980 -64204492 + L1MD2 LINE L1 6250 6359 0 190 259 0 69 chr11 84579252 84579310 -64204162 - L2 LINE L2 -3 3269 3216 236 256 30 125 chr11 84579411 84579579 -64203893 - L2 LINE L2 -50 3263 3112 230 218 36 18 chr11 84579940 84579995 -64203477 - L3 LINE CR1 -1192 385 330 351 0 0 0 chr11 84580199 84580238 -64203234 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 270 136 0 0 chr11 84580408 84580452 -64203020 + (TG)n Simple_repeat Simple_repeat 1 44 0 269 327 115 69 chr11 84580519 84581073 -64202399 - L2 LINE L2 -1 3271 2687 491 0 17 0 chr11 84581668 84581727 -64201745 + (TAGA)n Simple_repeat Simple_repeat 4 63 0 780 168 0 7 chr11 84581780 84581917 -64201555 + FLAM_C SINE Alu 6 141 -2 5978 196 53 24 chr11 84582064 84582968 -64200504 - L1MC3 LINE L1 0 7785 6823 342 80 0 0 chr11 84582968 84583018 -64200454 + (TG)n Simple_repeat Simple_repeat 2 51 0 5978 196 53 24 chr11 84583018 84583545 -64199927 - L1MC3 LINE L1 -962 6823 6313 2181 231 28 27 chr11 84583718 84584226 -64199246 + MLT2B3 LTR ERVL 1 472 -48 204 40 0 0 chr11 84584226 84584251 -64199221 + (TCTG)n Simple_repeat Simple_repeat 3 27 0 2181 231 28 27 chr11 84584251 84584301 -64199171 + MLT2B3 LTR ERVL 472 520 0 862 288 71 76 chr11 84584340 84584763 -64198709 - L2 LINE L2 -609 2705 2285 231 326 23 0 chr11 84585336 84585422 -64198050 + MIR SINE MIR 72 159 -103 220 339 101 0 chr11 84585493 84585602 -64197870 - MIR SINE MIR -71 191 72 * 241 274 60 24 chr11 84585593 84585677 -64197795 - L2 LINE L2 -2 3311 3225 279 0 0 0 chr11 84586191 84586222 -64197250 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 244 24 24 48 chr11 84586350 84586392 -64197080 + (TTTTG)n Simple_repeat Simple_repeat 5 45 0 1904 152 21 27 chr11 84586620 84586995 -64196477 + THE1C LTR MaLR 1 373 -2 221 354 107 39 chr11 84587100 84587380 -64196092 - L2 LINE L2 -4 3309 3011 471 383 49 26 chr11 84587463 84587813 -64195659 - L2 LINE L2 -412 2902 2545 23 33 0 0 chr11 84587982 84588012 -64195460 + AT_rich Low_complexity Low_complexity 1 30 0 605 246 0 0 chr11 84588561 84588683 -64194789 + MIR SINE MIR 63 184 -78 2221 280 109 60 chr11 84588912 84590360 -64193112 + L2 LINE L2 1814 3313 0 206 379 60 0 chr11 84590414 84590530 -64192942 - L2 LINE L2 -9 3304 3182 327 341 35 16 chr11 84590631 84590886 -64192586 - LTR16C LTR ERVL -76 415 156 2337 144 5 8 chr11 84590896 84591272 -64192200 - THE1C LTR MaLR 0 375 1 9302 119 72 11 chr11 84591272 84592762 -64190710 - THE1C-int LTR MaLR 0 1580 1 2338 132 16 5 chr11 84592762 84593133 -64190339 - THE1C LTR MaLR 0 375 1 377 166 53 33 chr11 84593155 84593256 -64190216 + MSTB LTR MaLR 11 126 -326 710 246 50 76 chr11 84593344 84593661 -64189811 - MLT1A2 LTR MaLR -65 309 1 2385 74 0 3 chr11 84594000 84594296 -64189176 - AluY SINE Alu -16 295 1 434 194 55 36 chr11 84594296 84594461 -64189011 - L1M2a LINE L1 -4947 2262 2095 709 63 0 0 chr11 84594463 84594558 -64188914 - AluY SINE Alu -3 308 214 1794 286 42 33 chr11 84594560 84595795 -64187677 - L1M2a LINE L1 -5111 2098 139 183 382 116 20 chr11 84596170 84596263 -64187209 - L2 LINE L2 -498 2816 2733 2360 153 62 2 chr11 84596263 84596667 -64186805 - MSTA LTR MaLR 0 428 1 183 382 116 20 chr11 84596667 84597031 -64186441 - L2 LINE L2 -581 2733 2315 249 33 0 0 chr11 84597201 84597231 -64186241 + (TG)n Simple_repeat Simple_repeat 2 31 0 180 0 0 0 chr11 84597478 84597498 -64185974 + (A)n Simple_repeat Simple_repeat 1 20 0 1896 122 39 14 chr11 84598038 84598324 -64185148 + AluSg SINE Alu 1 293 -17 1342 245 43 14 chr11 84598422 84598773 -64184699 + MLT1A1 LTR MaLR 5 365 0 276 284 0 11 chr11 84599526 84599621 -64183851 + L2 LINE L2 2553 2646 -668 258 105 0 0 chr11 84599654 84599692 -64183780 + (T)n Simple_repeat Simple_repeat 1 38 0 331 345 93 7 chr11 84600717 84600868 -64182604 + MIR SINE MIR 28 188 -64 264 329 0 0 chr11 84601799 84601878 -64181594 - L2 LINE L2 0 3313 3235 2094 141 33 28 chr11 84601893 84602255 -64181217 + THE1B LTR MaLR 1 364 0 842 310 87 7 chr11 84602444 84602847 -64180625 - LTR16A LTR ERVL 0 450 16 258 339 33 8 chr11 84602894 84603015 -64180457 - MLT1L LTR MaLR -185 430 307 256 203 17 0 chr11 84603116 84603175 -64180297 - MLT1L LTR MaLR -536 79 20 323 178 100 11 chr11 84604483 84604573 -64178899 - MER103 DNA DNA -49 117 20 266 310 100 50 chr11 84605466 84605705 -64177767 - MLT1J LTR MaLR -161 350 100 766 268 0 6 chr11 84606156 84606339 -64177133 - MER5A DNA MER1_type -3 186 5 687 195 23 29 chr11 84608010 84608184 -64175288 - L1MA6 LINE L1 -169 7550 7378 13810 196 12 6 chr11 84608186 84611897 -64171575 - L1PA13 LINE L1 -6 6808 3067 1208 222 37 0 chr11 84611897 84612140 -64171332 - L1PA13 LINE L1 -6535 252 1 11807 220 44 12 chr11 84612153 84614416 -64169056 - L1MA6 LINE L1 -328 7391 5203 2459 126 3 6 chr11 84614416 84614781 -64168691 - THE1B LTR MaLR 0 364 1 11807 220 44 12 chr11 84614781 84617725 -64165747 - L1MA6 LINE L1 -2516 5203 2009 635 225 34 0 chr11 84618129 84618307 -64165165 + MER3 DNA MER1_type 1 184 -25 38 0 0 0 chr11 84618329 84618367 -64165105 + AT_rich Low_complexity Low_complexity 1 38 0 321 350 0 0 chr11 84618522 84618625 -64164847 + MER5A DNA MER1_type 4 106 -83 338 327 19 37 chr11 84618675 84618781 -64164691 + MIR SINE MIR 31 137 -125 2617 108 8 3 chr11 84618781 84619143 -64164329 + THE1B LTR MaLR 1 364 0 338 327 19 37 chr11 84619143 84619271 -64164201 + MIR SINE MIR 137 259 -3 189 298 60 12 chr11 84619286 84619370 -64164102 + L2 LINE L2 3176 3263 -9 253 336 45 22 chr11 84620022 84620156 -64163316 + MIR SINE MIR 5 141 -121 1735 197 0 0 chr11 84620496 84620791 -64162681 + AluJb SINE Alu 3 297 -15 191 368 13 13 chr11 84621033 84621109 -64162363 - MIR SINE MIR -71 137 62 208 191 0 0 chr11 84621811 84621853 -64161619 + MIR SINE MIR 109 150 -112 207 267 50 0 chr11 84622477 84622537 -64160935 + MIR SINE MIR 124 186 -76 315 0 0 0 chr11 84622781 84622816 -64160656 + (TC)n Simple_repeat Simple_repeat 2 36 0 261 0 0 0 chr11 84622815 84622844 -64160628 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 2467 80 3 0 chr11 84623475 84623787 -64159685 + AluSp SINE Alu 1 313 0 233 312 75 98 chr11 84624699 84624994 -64158478 - L3 LINE CR1 -300 1277 990 297 297 318 8 chr11 84624999 84625235 -64158237 - L2 LINE L2 0 3313 3005 350 281 42 0 chr11 84625296 84625392 -64158080 + MIR SINE MIR 93 192 -70 202 204 73 95 chr11 84625854 84625991 -64157481 - L3b LINE CR1 -317 1266 1133 201 74 0 0 chr11 84626280 84626307 -64157165 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 617 323 62 4 chr11 84626390 84626616 -64156856 + MIR SINE MIR 13 251 -11 210 178 67 0 chr11 84626621 84626666 -64156806 + MIR SINE MIR 132 179 -83 306 293 54 54 chr11 84626821 84627043 -64156429 + L1ME4a LINE L1 5010 5231 -915 208 150 0 25 chr11 84627514 84627554 -64155918 + (TCTCC)n Simple_repeat Simple_repeat 4 42 0 2235 59 41 3 chr11 84627710 84628000 -64155472 + AluYa5 SINE Alu 1 301 -10 240 296 112 16 chr11 84628021 84628146 -64155326 - MIR SINE MIR -57 205 69 627 294 17 0 chr11 84628316 84628496 -64154976 - MIR SINE MIR 0 262 80 350 219 124 36 chr11 84628844 84628981 -64154491 + L1ME4a LINE L1 5736 5884 -237 24 32 0 0 chr11 84629056 84629087 -64154385 + AT_rich Low_complexity Low_complexity 1 31 0 259 327 61 42 chr11 84630155 84630367 -64153105 - L1MC/D LINE L1 -382 5739 5670 573 76 0 0 chr11 84630367 84630446 -64153026 + (TCTA)n Simple_repeat Simple_repeat 4 82 0 259 327 61 42 chr11 84630446 84630664 -64152808 - L1MC/D LINE L1 -451 5670 5458 381 240 48 40 chr11 84630857 84630982 -64152490 + MIR SINE MIR 28 153 -109 535 161 250 0 chr11 84631064 84631188 -64152284 + MER5A DNA MER1_type 33 187 -2 246 250 0 31 chr11 84631476 84631540 -64151932 + MIR SINE MIR 22 83 -179 191 316 38 0 chr11 84631582 84631661 -64151811 + MIR SINE MIR 162 243 -19 682 244 70 28 chr11 84631663 84631876 -64151596 - MIR SINE MIR 0 262 41 444 157 37 9 chr11 84631925 84632033 -64151439 + CT-rich Low_complexity Low_complexity 3 113 0 188 212 0 0 chr11 84632384 84632417 -64151055 - MIR SINE MIR -33 229 197 713 283 43 0 chr11 84632637 84632824 -64150648 - MIR SINE MIR -56 206 12 189 74 0 0 chr11 84635002 84635029 -64148443 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 201 328 99 46 chr11 84635317 84635448 -64148024 - MIR SINE MIR -116 146 9 757 264 28 6 chr11 84635893 84636075 -64147397 + MIR SINE MIR 8 193 -69 267 300 12 0 chr11 84636404 84636484 -64146988 - L2 LINE L2 -39 3233 3153 203 265 0 0 chr11 84636576 84636625 -64146847 + MIR SINE MIR 198 246 -16 635 275 177 31 chr11 84636635 84636991 -64146481 - L2 LINE L2 -3 3310 2903 270 222 32 0 chr11 84636995 84637058 -64146414 - MLT1K LTR MaLR -1 587 523 399 209 122 26 chr11 84637925 84638040 -64145432 + LTR33 LTR ERVL 85 210 -311 457 246 116 55 chr11 84638097 84638212 -64145260 + LTR33 LTR ERVL 304 437 -84 4819 58 87 0 chr11 84638212 84638845 -64144627 - LTR12 LTR ERV1 0 688 1 457 246 116 55 chr11 84638845 84638928 -64144544 + LTR33 LTR ERVL 437 514 -7 180 317 30 106 chr11 84639032 84639231 -64144241 + L2 LINE L2 2916 3099 -173 24 32 0 0 chr11 84639531 84639562 -64143910 + AT_rich Low_complexity Low_complexity 1 31 0 1113 288 89 53 chr11 84640112 84640743 -64142729 + L1M3d LINE L1 421 1090 -5213 1979 273 111 8 chr11 84641077 84642112 -64141360 + L1MB1 LINE L1 800 1871 -4513 25 0 0 0 chr11 84642142 84642167 -64141305 + AT_rich Low_complexity Low_complexity 1 25 0 2554 240 60 25 chr11 84642167 84642834 -64140638 + L1MB1 LINE L1 2017 2660 -3722 390 115 0 0 chr11 84642834 84642895 -64140577 + (TA)n Simple_repeat Simple_repeat 2 62 0 2554 240 60 25 chr11 84642895 84643563 -64139909 + L1MB1 LINE L1 2660 3403 -2979 * 3834 187 60 17 chr11 84643541 84644464 -64139008 + L1MB1 LINE L1 4211 5172 -1210 * 3894 194 18 35 chr11 84644462 84645111 -64138361 + L1MB1 LINE L1 5419 6053 -351 2217 120 13 0 chr11 84645111 84645419 -64138053 + AluSx SINE Alu 1 312 0 3894 194 18 35 chr11 84645419 84645765 -64137707 + L1MB1 LINE L1 6053 6403 -1 1153 289 70 20 chr11 84645755 84646295 -64137177 + L1ME3A LINE L1 5380 5946 -224 * 1813 122 14 54 chr11 84646607 84646930 -64136542 - AluSx SINE Alu 0 311 1 462 108 0 0 chr11 84646948 84647022 -64136450 + (TGGA)n Simple_repeat Simple_repeat 1 74 0 463 376 0 0 chr11 84647622 84647792 -64135680 - MIR SINE MIR -86 176 7 532 211 123 0 chr11 84647909 84648023 -64135449 - MIR SINE MIR -117 145 18 1920 110 30 40 chr11 84648631 84648932 -64134540 + AluY SINE Alu 1 298 -13 445 313 8 45 chr11 84649932 84650178 -64133294 - L1MEc LINE L1 -6121 275 39 21 0 0 0 chr11 84650384 84650405 -64133067 + AT_rich Low_complexity Low_complexity 1 21 0 409 299 186 10 chr11 84650513 84650717 -64132755 - MIR SINE MIR -6 256 17 183 215 62 62 chr11 84651414 84651479 -64131993 - MIR SINE MIR -26 236 172 37 69 0 0 chr11 84651882 84651954 -64131518 + AT_rich Low_complexity Low_complexity 1 72 0 215 278 19 0 chr11 84652179 84652233 -64131239 - L2 LINE L2 -8 3264 3210 244 333 29 19 chr11 84652271 84652376 -64131096 + MIR SINE MIR 3 108 -154 2110 194 49 5 chr11 84652377 84652785 -64130687 - MSTA LTR MaLR -2 426 1 8696 181 19 14 chr11 84652785 84654378 -64129094 - MSTA-int LTR MaLR 0 1651 51 254 136 45 0 chr11 84654378 84654422 -64129050 + MSTA LTR MaLR 383 428 0 208 309 134 31 chr11 84654571 84654668 -64128804 - MIR SINE MIR -111 151 45 200 333 28 0 chr11 84655848 84655920 -64127552 - MIR SINE MIR -13 249 176 410 298 125 12 chr11 84656088 84656256 -64127216 + MIR SINE MIR 66 252 -10 242 353 59 29 chr11 84656932 84657068 -64126404 + MIR SINE MIR 14 153 -55 195 175 75 0 chr11 84657192 84657232 -64126240 - L2 LINE L2 -10 3303 3261 187 376 53 0 chr11 84657349 84657482 -64125990 + L2 LINE L2 2843 2982 -290 620 556 0 0 chr11 84657563 84657743 -64125729 + T-rich Low_complexity Low_complexity 1 180 0 461 168 22 26 chr11 84657765 84657902 -64125570 - MER5A DNA MER1_type 0 189 4 183 273 109 0 chr11 84658050 84658105 -64125367 + MIR SINE MIR 85 145 -63 264 302 0 0 chr11 84658619 84658682 -64124790 + polypurine Low_complexity Low_complexity 3 65 0 346 113 169 0 chr11 84658853 84658924 -64124548 - L1PA13 LINE L1 -10 6153 6071 262 343 111 0 chr11 84659308 84659416 -64124056 + L2 LINE L2 3153 3272 0 227 175 18 0 chr11 84659416 84659473 -64123999 + GA-rich Low_complexity Low_complexity 2 59 0 287 200 0 0 chr11 84659513 84659563 -64123909 + L2 LINE L2 3255 3304 -9 980 156 0 0 chr11 84660391 84660551 -64122921 - AluSg/x SINE Alu -9 303 144 265 265 15 15 chr11 84660730 84660798 -64122674 - L2 LINE L2 -4 3268 3201 244 225 62 38 chr11 84661243 84661323 -64122149 - MER58 DNA MER1_type -119 96 15 220 257 171 0 chr11 84661346 84661416 -64122056 - L3 LINE CR1 -400 1177 1096 362 304 49 105 chr11 84661931 84662178 -64121294 - L3 LINE CR1 -636 941 709 207 356 0 30 chr11 84662267 84662368 -64121104 - L3 LINE CR1 -102 1475 1378 224 292 109 22 chr11 84662413 84662550 -64120922 - MIR SINE MIR -57 205 57 28818 124 10 18 chr11 84662565 84668718 -64114754 - L1PA8 LINE L1 0 6487 340 280 289 113 10 chr11 84668741 84668838 -64114634 - L3 LINE CR1 -194 1383 1277 229 299 83 56 chr11 84668928 84669122 -64114350 + MIR SINE MIR 2 197 -11 240 319 127 38 chr11 84669200 84669357 -64114115 - L3 LINE CR1 -330 1247 1077 857 256 37 16 chr11 84669391 84669633 -64113839 - MIR SINE MIR 0 262 16 1946 116 31 3 chr11 84669810 84670104 -64113368 + AluSx SINE Alu 1 302 -10 344 279 101 8 chr11 84670130 84670259 -64113213 + MIR SINE MIR 92 232 -30 264 309 27 9 chr11 84670386 84670496 -64112976 - L2 LINE L2 -209 3063 2952 21 0 0 0 chr11 84670858 84670879 -64112593 + AT_rich Low_complexity Low_complexity 1 21 0 396 288 114 55 chr11 84670918 84671154 -64112318 + MIR SINE MIR 13 262 0 228 135 0 0 chr11 84671193 84671230 -64112242 + (TA)n Simple_repeat Simple_repeat 2 38 0 502 317 69 58 chr11 84671575 84672026 -64111446 + L2 LINE L2 2817 3272 0 368 321 50 21 chr11 84672155 84672295 -64111177 + MIR SINE MIR 45 188 -74 710 250 91 14 chr11 84672599 84672807 -64110665 - MIR SINE MIR -37 225 2 559 304 26 18 chr11 84672817 84673011 -64110461 + MIR SINE MIR 17 210 -52 605 267 55 10 chr11 84673808 84674010 -64109462 + MIR SINE MIR 52 262 0 429 263 51 42 chr11 84674105 84674223 -64109249 + MIR SINE MIR 20 138 -124 318 275 23 92 chr11 84674382 84674513 -64108959 - MIR3 SINE MIR -9 199 78 263 175 18 0 chr11 84674642 84674699 -64108773 + GA-rich Low_complexity Low_complexity 3 60 0 308 301 150 21 chr11 84674765 84674931 -64108541 + MIR SINE MIR 1 188 -74 2154 132 3 7 chr11 84674946 84675256 -64108216 + AluSx SINE Alu 4 312 0 261 83 0 0 chr11 84675428 84675464 -64108008 + (A)n Simple_repeat Simple_repeat 1 36 0 396 362 18 0 chr11 84675726 84675889 -64107583 - MIR SINE MIR -8 254 89 246 208 0 0 chr11 84676271 84676324 -64107148 + (CATA)n Simple_repeat Simple_repeat 2 54 0 21 0 0 0 chr11 84677462 84677483 -64105989 + AT_rich Low_complexity Low_complexity 1 21 0 263 333 85 61 chr11 84679271 84679436 -64104036 - L2 LINE L2 -33 3239 3071 258 275 9 9 chr11 84679755 84679864 -64103608 - Alu SINE Alu 0 301 193 2856 7 0 0 chr11 84679974 84680284 -64103188 - AluYa5 SINE Alu -1 310 1 240 239 239 8 chr11 84681023 84681140 -64102332 + MIR SINE MIR 77 220 -42 432 273 0 0 chr11 84681337 84681436 -64102036 - MER5A DNA MER1_type -80 109 11 354 351 99 59 chr11 84681720 84682124 -64101348 + L2 LINE L2 2845 3264 -8 444 314 98 7 chr11 84682886 84683039 -64100433 + MIR SINE MIR 35 201 -61 190 320 87 19 chr11 84683401 84683504 -64099968 - MIR SINE MIR -105 157 48 1379 123 22 4 chr11 84683537 84683765 -64099707 + L1PA10 LINE L1 5922 6153 -15 1906 136 58 0 chr11 84684008 84684303 -64099169 + AluSx SINE Alu 1 312 0 22 0 0 0 chr11 84684423 84684445 -64099027 + AT_rich Low_complexity Low_complexity 1 22 0 5836 51 5 3 chr11 84684459 84685224 -64098248 - L1PA4 LINE L1 -2 6153 5387 581 224 122 6 chr11 84685313 84685563 -64097909 - MER46C DNA MER2_type -16 322 2 298 313 9 0 chr11 84685575 84685690 -64097782 - L1M4 LINE L1 -1962 4184 4069 338 317 65 46 chr11 84685955 84686280 -64097192 - L1M4 LINE L1 -2378 3768 3438 245 377 9 0 chr11 84686540 84686646 -64096826 - MIR3 SINE MIR -6 202 96 23 33 0 0 chr11 84687033 84687063 -64096409 + AT_rich Low_complexity Low_complexity 1 30 0 236 254 84 0 chr11 84687812 84687883 -64095589 + MIR SINE MIR 186 262 0 1133 117 152 0 chr11 84687922 84688119 -64095353 + MER30 DNA MER1_type 4 230 0 942 326 140 25 chr11 84688154 84688894 -64094578 + L2 LINE L2 2499 3312 -1 209 147 0 0 chr11 84689098 84689132 -64094340 - L2 LINE L2 -17 3296 3263 345 82 0 0 chr11 84689219 84689268 -64094204 + (TG)n Simple_repeat Simple_repeat 2 50 0 234 369 36 36 chr11 84689445 84689613 -64093859 + MIR SINE MIR 51 218 -44 192 250 161 0 chr11 84690076 84690132 -64093340 - L2 LINE L2 -212 3060 2996 2419 67 3 3 chr11 84690584 84690884 -64092588 + AluY SINE Alu 1 300 -11 243 217 0 0 chr11 84692301 84692361 -64091111 + (CA)n Simple_repeat Simple_repeat 1 60 0 316 345 68 48 chr11 84692361 84692610 -64090862 + L2 LINE L2 2982 3235 -37 320 278 106 7 chr11 84692645 84692796 -64090676 - MIR SINE MIR 0 262 97 1557 231 21 29 chr11 84692796 84693182 -64090290 - LTR16C LTR ERVL -2 489 107 257 248 28 121 chr11 84693216 84693357 -64090115 - MIR SINE MIR -131 131 4 267 264 182 9 chr11 84694198 84694308 -64089164 - L2 LINE L2 -10 3303 3175 2257 106 10 6 chr11 84694313 84694625 -64088847 + AluSp SINE Alu 1 313 0 374 151 14 0 chr11 84695396 84695469 -64088003 + GA-rich Low_complexity Low_complexity 3 76 0 358 294 114 57 chr11 84696314 84696542 -64086930 - MIR SINE MIR -2 260 20 321 312 33 81 chr11 84697090 84697326 -64086146 + MIR SINE MIR 37 260 -2 224 213 16 0 chr11 84697334 84697395 -64086077 + (TA)n Simple_repeat Simple_repeat 2 63 0 183 308 0 0 chr11 84697466 84697505 -64085967 + MIR SINE MIR 111 149 -59 24 0 0 0 chr11 84697579 84697603 -64085869 + AT_rich Low_complexity Low_complexity 1 24 0 216 111 56 0 chr11 84697713 84697749 -64085723 + MIR SINE MIR 125 162 -100 220 294 50 76 chr11 84698038 84698147 -64085325 + L2 LINE L2 3149 3256 -16 1475 159 119 51 chr11 84698147 84698518 -64084954 + MSTD LTR MaLR 1 396 0 1840 181 18 0 chr11 84699023 84699365 -64084107 - MER7A DNA MER2_type 0 346 1 689 309 62 0 chr11 84699774 84700017 -64083455 - MIR SINE MIR -1 261 4 263 337 69 0 chr11 84700204 84700305 -64083167 - L2 LINE L2 -16 3256 3149 480 160 20 20 chr11 84700442 84700542 -64082930 - Tigger3(Golem) DNA MER2_type -91 2938 2839 285 302 58 12 chr11 84700647 84700733 -64082739 - MIR3 SINE MIR -8 200 111 401 210 101 0 chr11 84701469 84701588 -64081884 - MER96B DNA MER1_type? -1 416 286 2096 144 3 0 chr11 84701647 84701952 -64081520 - AluSg SINE Alu -4 306 1 1878 153 6 25 chr11 84702170 84702484 -64080988 + AluSx SINE Alu 1 308 -4 250 183 100 0 chr11 84702608 84702668 -64080804 + MIR SINE MIR 122 187 -75 461 288 92 6 chr11 84704849 84705012 -64078460 - MIR SINE MIR -37 225 49 243 0 0 0 chr11 84705298 84705325 -64078147 + (T)n Simple_repeat Simple_repeat 1 27 0 2325 104 0 0 chr11 84705478 84705777 -64077695 - AluSg SINE Alu -11 299 1 559 374 22 27 chr11 84705891 84706252 -64077220 - L2 LINE L2 -217 3096 2732 322 347 75 17 chr11 84706241 84706414 -64077058 + MIR SINE MIR 50 232 -30 * 186 43 0 0 chr11 84706433 84706456 -64077016 + (TTG)n Simple_repeat Simple_repeat 1 23 0 304 225 0 45 chr11 84707096 84707185 -64076287 + CT-rich Low_complexity Low_complexity 2 86 0 5268 170 26 11 chr11 84707190 84708715 -64074757 - L1MA5 LINE L1 0 6300 4744 2104 119 13 13 chr11 84708715 84709017 -64074455 - AluSx SINE Alu -10 302 1 5268 170 26 11 chr11 84709017 84709281 -64074191 - L1MA5 LINE L1 -1556 4744 4485 1253 42 6 12 chr11 84709381 84709549 -64073923 - L1HS LINE L1 -9 6146 5980 273 330 21 21 chr11 84710358 84710455 -64073017 + MIR SINE MIR 21 117 -145 22 35 0 0 chr11 84710465 84710494 -64072978 + AT_rich Low_complexity Low_complexity 1 29 0 749 253 51 58 chr11 84710701 84710846 -64072626 - MIR SINE MIR 0 262 118 2147 126 10 10 chr11 84710846 84711155 -64072317 + AluSg SINE Alu 2 310 0 749 253 51 58 chr11 84711155 84711266 -64072206 - MIR SINE MIR -144 118 8 23 33 0 0 chr11 84711980 84712010 -64071462 + AT_rich Low_complexity Low_complexity 1 30 0 365 261 61 9 chr11 84712011 84712126 -64071346 - MIR3 SINE MIR -5 203 83 818 149 8 22 chr11 84712527 84712661 -64070811 + FLAM_C SINE Alu 2 133 0 21 0 0 0 chr11 84712726 84712747 -64070725 + GC_rich Low_complexity Low_complexity 1 21 0 923 247 107 66 chr11 84712896 84713516 -64069956 + L1MC4 LINE L1 7396 8040 -2 264 292 95 71 chr11 84713830 84713998 -64069474 + MIR SINE MIR 89 260 -2 487 325 74 10 chr11 84714133 84714336 -64069136 - MIR SINE MIR -32 230 15 24 77 0 0 chr11 84714739 84714791 -64068681 + AT_rich Low_complexity Low_complexity 1 52 0 3126 164 43 0 chr11 84714863 84715466 -64068006 - Tigger1 DNA MER2_type -1 2417 1789 344 184 66 0 chr11 84715622 84715698 -64067774 - Tigger1 DNA MER2_type -2337 81 1 2187 143 30 0 chr11 84715765 84716129 -64067343 - LTR43 LTR ERV1 0 602 228 3269 113 14 2 chr11 84716129 84716623 -64066849 - LTR3b LTR ERVK 0 500 1 1425 142 4 0 chr11 84716623 84716855 -64066617 - LTR43 LTR ERV1 -369 233 1 208 228 127 38 chr11 84716866 84716945 -64066527 + MIR SINE MIR 103 188 -74 1384 236 50 16 chr11 84717093 84717675 -64065797 - MER21B LTR ERV1 -111 752 98 303 275 44 0 chr11 84717717 84717808 -64065664 - MER21B LTR ERV1 -768 95 1 25 0 0 0 chr11 84717929 84717954 -64065518 + AT_rich Low_complexity Low_complexity 1 25 0 39 38 0 0 chr11 84718380 84718433 -64065039 + AT_rich Low_complexity Low_complexity 1 53 0 199 290 0 32 chr11 84720137 84720199 -64063273 + MIR SINE MIR 31 90 -118 313 309 91 0 chr11 84720270 84720380 -64063092 - MIR SINE MIR -65 197 78 1411 215 100 40 chr11 84720381 84720850 -64062622 - MLT1D LTR MaLR 0 505 9 262 253 48 24 chr11 84720851 84720934 -64062538 - MIR SINE MIR -176 86 2 231 36 0 0 chr11 84721615 84721643 -64061829 + (TCCC)n Simple_repeat Simple_repeat 3 30 0 185 211 18 0 chr11 84721682 84721739 -64061733 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 252 356 96 0 chr11 84722322 84722426 -64061046 + MIR SINE MIR 2 115 -147 2757 101 0 11 chr11 84722681 84723059 -64060413 - THE1C LTR MaLR -1 374 1 548 325 10 5 chr11 84724076 84724279 -64059193 - MER63A DNA MER1_type -5 205 2 223 71 48 0 chr11 84724753 84724795 -64058677 + (TA)n Simple_repeat Simple_repeat 2 45 0 532 253 0 22 chr11 84724927 84725201 -64058271 + GA-rich Low_complexity Low_complexity 1 267 0 255 291 13 0 chr11 84725852 84725931 -64057541 + (TAG)n Simple_repeat Simple_repeat 2 81 0 1621 188 48 68 chr11 84726205 84726603 -64056869 + MLT1B LTR MaLR 1 390 0 181 133 0 44 chr11 84726656 84726701 -64056771 + (GAAAA)n Simple_repeat Simple_repeat 4 46 0 275 185 62 15 chr11 84728321 84728386 -64055086 - MIR SINE MIR -46 216 149 1465 180 29 4 chr11 84728401 84728673 -64054799 - L1PB4 LINE L1 -7 6149 5871 230 306 145 79 chr11 84728895 84729314 -64054158 - L2 LINE L2 -337 2977 2520 1582 213 13 10 chr11 84729314 84729614 -64053858 + AluJb SINE Alu 1 301 -11 230 306 145 79 chr11 84729614 84729685 -64053787 - L2 LINE L2 -794 2520 2455 448 215 0 15 chr11 84729922 84730057 -64053415 + GA-rich Low_complexity Low_complexity 4 136 0 35 24 0 0 chr11 84730196 84730238 -64053234 + AT_rich Low_complexity Low_complexity 1 42 0 387 299 37 15 chr11 84730292 84730426 -64053046 - MIR SINE MIR -120 142 6 1760 229 13 5 chr11 84730474 84730867 -64052605 - MSTD LTR MaLR 0 396 1 17974 198 37 9 chr11 84731682 84735202 -64048270 + L1PA13 LINE L1 1 3420 -3394 2134 136 7 3 chr11 84735202 84735512 -64047960 + AluSx SINE Alu 2 312 0 17974 198 37 9 chr11 84735512 84735905 -64047567 + L1PA13 LINE L1 3420 3800 -3014 2739 99 5 0 chr11 84735905 84736278 -64047194 + THE1C LTR MaLR 1 375 0 17974 198 37 9 chr11 84736278 84738836 -64044636 + L1PA13 LINE L1 3800 6662 -152 241 319 210 25 chr11 84738880 84738999 -64044473 + MIR SINE MIR 113 253 -9 319 221 0 19 chr11 84739147 84739251 -64044221 + T-rich Low_complexity Low_complexity 2 103 0 198 159 232 14 chr11 84739533 84739602 -64043870 - MIR SINE MIR 0 262 179 355 364 42 12 chr11 84739735 84739950 -64043522 + MIR SINE MIR 30 251 -11 181 286 198 0 chr11 84739958 84740049 -64043423 + MIR SINE MIR 148 256 -6 254 308 290 18 chr11 84740597 84740766 -64042706 - MIR SINE MIR -20 242 28 315 297 63 27 chr11 84740775 84740886 -64042586 - MIR SINE MIR -64 144 30 1568 219 3 0 chr11 84740945 84741233 -64042239 + AluJo SINE Alu 7 295 -17 330 260 32 136 chr11 84741253 84741482 -64041990 - L2 LINE L2 -32 3281 3091 2485 71 0 3 chr11 84741482 84741792 -64041680 + AluY SINE Alu 1 309 -2 330 260 32 136 chr11 84741792 84741870 -64041602 - L2 LINE L2 -222 3091 3006 550 294 89 0 chr11 84742104 84742284 -64041188 - L2 LINE L2 -608 2706 2511 496 272 0 8 chr11 84742283 84742408 -64041064 + L2 LINE L2 3190 3313 0 * 375 278 126 21 chr11 84742405 84742596 -64040876 - L2 LINE L2 -810 2504 2294 * 695 326 81 37 chr11 84742647 84743129 -64040343 - L2 LINE L2 -1938 1376 874 899 212 25 117 chr11 84743159 84743527 -64039945 - MLT1A2 LTR MaLR -11 363 30 784 314 77 25 chr11 84743572 84744094 -64039378 - L2 LINE L2 -2537 777 229 207 364 23 23 chr11 84744605 84744693 -64038779 + MIR SINE MIR 2 89 -173 681 304 118 26 chr11 84744766 84745148 -64038324 + LTR16C LTR ERVL 75 491 0 325 329 13 34 chr11 84745156 84745305 -64038167 + MIR SINE MIR 95 240 -22 189 320 227 0 chr11 84746656 84746753 -64036719 - L2 LINE L2 -16 3256 3138 360 358 136 8 chr11 84747526 84748079 -64035393 + L2 LINE L2 2221 3261 -11 218 284 14 27 chr11 84748442 84748516 -64034956 - MIR SINE MIR -171 91 19 260 290 108 0 chr11 84749030 84749123 -64034349 - L2 LINE L2 -8 3264 3162 236 370 78 19 chr11 84749759 84749913 -64033559 + L2 LINE L2 3087 3249 -23 323 354 44 17 chr11 84749974 84750155 -64033317 - L3 LINE CR1 -18 1559 1374 1037 220 60 46 chr11 84752018 84752725 -64030747 + MER21B LTR ERV1 13 750 -113 183 225 42 99 chr11 84752748 84752819 -64030653 + MIR SINE MIR 20 86 -122 292 227 19 143 chr11 84753245 84753283 -64030189 + MIR SINE MIR 112 153 -109 2483 172 20 11 chr11 84753283 84753743 -64029729 + MLT1C LTR MaLR 4 467 0 292 227 19 143 chr11 84753743 84753858 -64029614 + MIR SINE MIR 153 246 -16 24 32 0 0 chr11 84753967 84753998 -64029474 + AT_rich Low_complexity Low_complexity 1 31 0 464 281 104 16 chr11 84754525 84754774 -64028698 + L1ME LINE L1 5477 5747 -374 226 217 33 17 chr11 84755740 84755800 -64027672 + MIR SINE MIR 87 147 -115 925 285 40 37 chr11 84755848 84756251 -64027221 - LTR16A LTR ERVL -35 415 12 222 37 0 0 chr11 84758590 84758617 -64024855 + (T)n Simple_repeat Simple_repeat 1 27 0 1394 188 38 27 chr11 84758706 84758829 -64024643 + AluJo SINE Alu 1 121 -191 495 0 0 0 chr11 84758829 84758884 -64024588 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 1394 188 38 27 chr11 84758884 84759052 -64024420 + AluJo SINE Alu 121 295 -17 253 296 10 20 chr11 84759402 84759500 -64023972 + MLT1I LTR MaLR 1 97 -312 362 196 65 37 chr11 84759640 84759747 -64023725 + MLT1I LTR MaLR 298 407 -2 21 0 0 0 chr11 84759878 84759899 -64023573 + AT_rich Low_complexity Low_complexity 1 21 0 213 333 51 58 chr11 84760069 84760207 -64023265 + L2 LINE L2 2716 2852 -462 1693 194 48 14 chr11 84760317 84760668 -64022804 - MLT1A1 LTR MaLR 0 365 3 370 324 112 17 chr11 84760772 84760951 -64022521 + L2 LINE L2 3117 3312 -1 1463 181 100 0 chr11 84761098 84761379 -64022093 - AluJo SINE Alu -3 309 1 181 357 71 24 chr11 84761588 84761672 -64021800 - L2 LINE L2 -42 3230 3143 208 337 0 24 chr11 84762043 84762126 -64021346 - MIR SINE MIR -109 99 19 206 325 46 53 chr11 84762133 84762284 -64021188 + MER5A DNA MER1_type 1 150 -39 324 337 103 23 chr11 84763110 84763410 -64020062 + L2 LINE L2 2290 2613 -701 210 329 43 0 chr11 84763596 84763666 -64019806 + L2 LINE L2 2932 3004 -268 25 31 0 0 chr11 84763693 84763725 -64019747 + AT_rich Low_complexity Low_complexity 1 32 0 248 280 40 0 chr11 84764868 84764968 -64018504 + L1ME LINE L1 5719 5822 -299 22 80 0 0 chr11 84765013 84765063 -64018409 + AT_rich Low_complexity Low_complexity 1 50 0 243 337 99 44 chr11 84765453 84765779 -64017693 + L2 LINE L2 2740 3090 -182 400 221 0 0 chr11 84765790 84765867 -64017605 - MER63 DNA MER1_type 0 1062 986 238 323 0 0 chr11 84765885 84765947 -64017525 - MER63 DNA MER1_type -306 755 694 343 252 67 34 chr11 84766051 84766170 -64017302 + L2 LINE L2 3141 3263 -9 443 284 125 17 chr11 84766998 84767174 -64016298 + MIR SINE MIR 9 203 -59 2170 199 16 71 chr11 84767264 84767812 -64015660 + MLT2B1 LTR ERVL 1 518 -2 244 388 0 0 chr11 84768042 84768122 -64015350 + MIR SINE MIR 42 121 -87 359 336 34 0 chr11 84768123 84768269 -64015203 - L2 LINE L2 -4 3309 3159 272 342 94 7 chr11 84768831 84768980 -64014492 - MIR SINE MIR -69 193 32 6991 50 24 5 chr11 84769241 84770183 -64013289 - L1PA7 LINE L1 -16 6138 5192 466 256 19 31 chr11 84770210 84770370 -64013102 - MLT1H LTR MaLR -16 533 376 411 356 59 59 chr11 84770507 84770951 -64012521 + L2 LINE L2 2828 3271 -1 217 211 0 0 chr11 84771587 84771625 -64011847 + (TGGA)n Simple_repeat Simple_repeat 3 40 0 568 289 24 59 chr11 84771913 84772166 -64011306 + MIR SINE MIR 9 252 -10 263 261 50 68 chr11 84773044 84773205 -64010267 + MIR SINE MIR 32 189 -73 264 296 0 0 chr11 84773211 84773282 -64010190 + GA-rich Low_complexity Low_complexity 2 72 0 208 309 122 92 chr11 84773559 84773821 -64009651 + L2 LINE L2 3003 3272 0 337 333 86 24 chr11 84773920 84774130 -64009342 - MIR SINE MIR -6 256 34 412 340 53 16 chr11 84774707 84774895 -64008577 + MIR3 SINE MIR 13 207 -1 627 318 32 18 chr11 84774998 84775218 -64008254 + MIR SINE MIR 24 246 -16 807 265 98 42 chr11 84775441 84775543 -64007929 - L2 LINE L2 -1038 2276 2181 897 214 0 6 chr11 84775543 84775721 -64007751 - MER5B DNA MER1_type -1 177 1 807 265 98 42 chr11 84775721 84776018 -64007454 - L2 LINE L2 -1133 2181 1855 377 310 101 16 chr11 84776286 84776415 -64007057 - MER91C DNA MER1_type 0 140 1 368 282 24 32 chr11 84776710 84776834 -64006638 - L2 LINE L2 -2 3311 3189 275 333 21 0 chr11 84776885 84776978 -64006494 + MIR SINE MIR 42 136 -126 941 259 56 50 chr11 84777332 84778161 -64005311 + L1MEc LINE L1 1948 2741 -3474 300 139 0 0 chr11 84778404 84778447 -64005025 + Alu SINE Alu 3 45 -258 470 290 88 0 chr11 84778520 84778713 -64004759 - HERV16 LTR ERVL -3099 1897 1688 384 362 96 28 chr11 84778780 84779167 -64004305 - HERV16 LTR ERVL -3475 1521 1109 183 281 169 0 chr11 84779911 84780000 -64003472 + MIR SINE MIR 74 177 -85 903 162 46 6 chr11 84780002 84780175 -64003297 - MER20 DNA MER1_type -17 202 23 367 286 0 93 chr11 84780270 84780410 -64003062 - MIR SINE MIR -32 230 104 422 240 30 0 chr11 84780463 84780563 -64002909 + MER5A DNA MER1_type 9 111 -78 2253 92 7 0 chr11 84780600 84780904 -64002568 + AluSp SINE Alu 1 306 -7 1276 217 40 71 chr11 84780932 84780958 -64002514 - MLT2D LTR ERVL -12 508 483 468 0 0 0 chr11 84780958 84781010 -64002462 + (TG)n Simple_repeat Simple_repeat 2 53 0 1276 217 40 71 chr11 84781010 84781395 -64002077 - MLT2D LTR ERVL -37 483 1 380 345 42 5 chr11 84781640 84781831 -64001641 + MIR SINE MIR 36 233 -29 186 103 0 0 chr11 84781905 84781934 -64001538 + (TCCC)n Simple_repeat Simple_repeat 1 29 0 279 297 45 63 chr11 84781979 84782090 -64001382 - L2 LINE L2 -42 3230 3122 194 285 161 58 chr11 84782366 84782657 -64000815 - L2 LINE L2 -381 2933 2613 1033 182 5 0 chr11 84782845 84783032 -64000440 - L1PA16 LINE L1 -9 6157 5970 617 281 67 22 chr11 84784004 84784228 -63999244 - MIR SINE MIR -28 234 1 195 162 0 0 chr11 84784430 84784467 -63999005 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 336 271 42 35 chr11 84784859 84785003 -63998469 + MIR3 SINE MIR 16 160 -48 26 30 0 0 chr11 84786439 84786472 -63997000 + AT_rich Low_complexity Low_complexity 1 33 0 354 300 25 16 chr11 84786759 84786910 -63996562 - MIR SINE MIR -35 173 21 374 249 87 92 chr11 84787314 84787499 -63995973 - MIR SINE MIR -6 256 73 1906 146 17 0 chr11 84787759 84788054 -63995418 + AluSx SINE Alu 1 300 -12 478 211 11 0 chr11 84788115 84788210 -63995262 + MER20 DNA MER1_type 123 218 -1 2257 105 0 7 chr11 84788451 84788745 -63994727 + AluSc SINE Alu 1 292 -17 248 331 8 54 chr11 84789712 84789842 -63993630 + L2 LINE L2 3187 3310 -3 779 255 102 0 chr11 84790920 84791155 -63992317 + MIR SINE MIR 4 262 0 450 284 130 19 chr11 84791191 84791406 -63992066 - MIR SINE MIR 0 262 24 252 0 0 0 chr11 84791492 84791520 -63991952 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1876 101 71 0 chr11 84791522 84791789 -63991683 - AluSx SINE Alu -26 286 1 284 365 44 51 chr11 84791874 84792148 -63991324 + L2 LINE L2 3001 3272 0 279 322 53 35 chr11 84792142 84792300 -63991172 - MIR SINE MIR -61 201 39 * 412 235 52 17 chr11 84793020 84793135 -63990337 - MIR SINE MIR -39 223 105 279 0 0 0 chr11 84795981 84796012 -63987460 + (CA)n Simple_repeat Simple_repeat 2 32 0 277 307 131 29 chr11 84796271 84796408 -63987064 - MER5A DNA MER1_type -3 186 36 583 297 21 16 chr11 84796844 84797036 -63986436 + MIR SINE MIR 33 225 -37 314 197 132 0 chr11 84797268 84797344 -63986128 + L2 LINE L2 3220 3305 -8 185 300 14 43 chr11 84797344 84797414 -63986058 + L2 LINE L2 3205 3272 0 591 340 35 0 chr11 84797425 84797628 -63985844 - MIR SINE MIR -5 257 48 330 290 131 51 chr11 84797882 84798096 -63985376 + MIR SINE MIR 20 250 -12 4569 193 24 29 chr11 84798281 84799313 -63984159 - L1MA10 LINE L1 -1 6333 5305 197 32 0 32 chr11 84799313 84799344 -63984128 + (TG)n Simple_repeat Simple_repeat 1 30 0 4569 193 24 29 chr11 84799344 84799396 -63984076 - L1MA10 LINE L1 -1029 5305 5254 3524 192 13 5 chr11 84799393 84800183 -63983289 + L1MA10 LINE L1 4464 5259 -887 * 644 256 45 0 chr11 84800804 84800980 -63982492 + MER20 DNA MER1_type 31 214 -5 562 300 19 67 chr11 84801142 84801352 -63982120 + MIR SINE MIR 48 247 -15 427 389 28 0 chr11 84802404 84802548 -63980924 + L2 LINE L2 3123 3270 -2 1195 287 19 9 chr11 84802604 84803025 -63980447 + LTR16A LTR ERVL 26 450 0 270 324 51 40 chr11 84803084 84803260 -63980212 - MIR SINE MIR -53 209 32 700 328 37 35 chr11 84803556 84803962 -63979510 - L2 LINE L2 -1 3312 2906 4319 177 34 33 chr11 84804002 84804885 -63978587 - L1MA4 LINE L1 0 6300 5397 2034 129 7 32 chr11 84804885 84805194 -63978278 - AluSx SINE Alu -11 301 1 4319 177 34 33 chr11 84805194 84805919 -63977553 - L1MA4 LINE L1 -903 5397 4674 428 233 180 0 chr11 84805923 84806095 -63977377 + L2 LINE L2 3107 3309 -4 1005 301 69 79 chr11 84806097 84806848 -63976624 - L2 LINE L2 -415 2899 2156 215 291 35 23 chr11 84807019 84807105 -63976367 - L2 LINE L2 -2286 1028 942 195 343 55 0 chr11 84808126 84808199 -63975273 + L2 LINE L2 3196 3272 0 3384 164 6 27 chr11 84808368 84809048 -63974424 - L1M2 LINE L1 -549 5742 5092 1944 146 11 0 chr11 84809048 84809376 -63974096 + AluSx SINE Alu 1 331 0 3384 164 6 27 chr11 84809376 84809726 -63973746 - L1M2 LINE L1 -1199 5092 4736 2327 158 74 23 chr11 84809734 84810248 -63973224 + L1MA7 LINE L1 5743 6282 -9 391 289 25 16 chr11 84810595 84810716 -63972756 - L2 LINE L2 -5 3308 3187 645 241 73 21 chr11 84811480 84811671 -63971801 - L2 LINE L2 0 3313 3113 420 282 19 39 chr11 84811673 84811829 -63971643 - MLT1H1 LTR MaLR -402 153 1 311 269 76 50 chr11 84811829 84811948 -63971524 - L2 LINE L2 -560 2754 2633 368 299 171 0 chr11 84812105 84812222 -63971250 - L2 LINE L2 0 3272 3136 201 307 34 34 chr11 84812595 84812683 -63970789 + L2 LINE L2 2976 3063 -209 389 293 23 45 chr11 84812848 84812981 -63970491 - MIR SINE MIR -97 165 36 1112 260 83 26 chr11 84813030 84813415 -63970057 + MLT1C LTR MaLR 61 467 0 216 346 79 16 chr11 84814892 84815019 -63968453 + L2 LINE L2 3169 3303 -10 180 250 0 0 chr11 84815160 84815212 -63968260 - MIR SINE MIR -32 230 179 304 192 0 0 chr11 84815285 84815337 -63968135 - MIR SINE MIR -108 154 103 407 115 0 0 chr11 84815430 84815491 -63967981 - L1P3 LINE L1 -359 5813 5753 460 100 0 14 chr11 84815491 84815552 -63967920 + L1PA8 LINE L1 6086 6154 -18 267 175 21 10 chr11 84815552 84815649 -63967823 + (TA)n Simple_repeat Simple_repeat 1 98 0 286 238 36 0 chr11 84816219 84816303 -63967169 + (TA)n Simple_repeat Simple_repeat 1 87 0 192 40 0 0 chr11 84816312 84816337 -63967135 + (CA)n Simple_repeat Simple_repeat 2 26 0 516 211 54 20 chr11 84816789 84816936 -63966536 - MIR SINE MIR -15 247 96 1054 78 13 20 chr11 84817254 84817407 -63966065 + L1PA8 LINE L1 6012 6163 -9 359 321 121 46 chr11 84817513 84817859 -63965613 - L2 LINE L2 -383 2931 2560 283 214 226 0 chr11 84817857 84817941 -63965531 + L2 LINE L2 3170 3272 0 * 1890 65 8 24 chr11 84818035 84818283 -63965189 - AluSq SINE Alu -5 308 65 337 316 36 7 chr11 84818324 84818463 -63965009 - MIR SINE MIR -17 245 103 470 347 91 28 chr11 84818530 84818957 -63964515 - LTR33 LTR ERVL -67 454 1 269 275 201 58 chr11 84818960 84819149 -63964323 - L2 LINE L2 -13 3259 3044 369 213 80 80 chr11 84819541 84819691 -63963781 + MIR SINE MIR 49 198 -64 356 318 48 8 chr11 84821236 84821362 -63962110 - L2 LINE L2 0 3313 3183 932 253 59 4 chr11 84821549 84821786 -63961686 - MIR SINE MIR -11 251 2 297 326 49 33 chr11 84822350 84822534 -63960938 - MIR SINE MIR -15 247 61 916 258 109 22 chr11 84824888 84825473 -63957999 - L1MEc LINE L1 -4137 2259 1624 914 247 33 63 chr11 84825554 84825983 -63957489 - L1MEc LINE L1 -5468 737 322 326 380 61 40 chr11 84826425 84826722 -63956750 - L2 LINE L2 -412 2902 2600 1333 218 44 31 chr11 84826858 84827243 -63956229 + MLT1B LTR MaLR 1 390 0 319 256 12 0 chr11 84828968 84829050 -63954422 + MIR SINE MIR 180 262 0 295 391 65 0 chr11 84829211 84829349 -63954123 - L2 LINE L2 0 3272 3126 1042 142 0 0 chr11 84829386 84829541 -63953931 + AluJb SINE Alu 156 310 -2 1964 152 3 3 chr11 84829877 84830180 -63953292 + AluJb SINE Alu 1 303 -9 6063 36 0 0 chr11 84830180 84830897 -63952575 + L1PA3 LINE L1 5438 6154 -1 430 296 128 39 chr11 84831208 84831387 -63952085 + MIR SINE MIR 62 256 -6 432 328 35 52 chr11 84831839 84832126 -63951346 - HAL1 LINE L1 0 2507 2226 3825 79 0 15 chr11 84832239 84832587 -63950885 - L1PA8 LINE L1 -3 6169 5830 2214 88 11 0 chr11 84832587 84832871 -63950601 - AluSx SINE Alu -3 309 23 3825 79 0 15 chr11 84832871 84833055 -63950417 - L1PA8 LINE L1 -342 5830 5645 325 325 60 18 chr11 84833060 84833226 -63950246 - HAL1 LINE L1 -475 2032 1860 584 284 151 23 chr11 84833234 84833556 -63949916 - HAL1 LINE L1 -696 1811 1407 1239 197 41 105 chr11 84833556 84833946 -63949526 + MLT1A1 LTR MaLR 1 365 0 584 284 151 23 chr11 84833946 84834099 -63949373 - HAL1 LINE L1 -1100 1407 1275 846 256 29 22 chr11 84834115 84834389 -63949083 - MER92C LTR ERV1 -2 552 277 445 338 71 52 chr11 84834392 84834857 -63948615 - HAL1 LINE L1 -1279 1228 755 195 42 0 0 chr11 84834901 84834925 -63948547 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 548 305 52 90 chr11 84834962 84835694 -63947778 - HAL1 LINE L1 -1783 724 21 283 280 87 73 chr11 84835874 84836024 -63947448 - MIR SINE MIR -72 190 39 1940 135 18 29 chr11 84836149 84836490 -63946982 + MER44D DNA MER2_type 2 608 -1 28 29 0 0 chr11 84836497 84836532 -63946940 + AT_rich Low_complexity Low_complexity 1 35 0 258 216 7 105 chr11 84837056 84837157 -63946315 - MIR3 SINE MIR -15 193 105 210 37 0 0 chr11 84838412 84838439 -63945033 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 1831 77 8 4 chr11 84838518 84838752 -63944720 - AluSq SINE Alu -5 308 74 582 258 6 0 chr11 84839388 84839555 -63943917 - L1ME2 LINE L1 -9 6155 5988 28 0 0 0 chr11 84839949 84839977 -63943495 + AT_rich Low_complexity Low_complexity 1 28 0 348 349 57 0 chr11 84840433 84840539 -63942933 + L2 LINE L2 3145 3256 -16 195 327 58 67 chr11 84840557 84840586 -63942886 + L2 LINE L2 3166 3194 -78 1836 173 11 35 chr11 84840586 84840957 -63942515 - MLT1A1 LTR MaLR -3 362 1 195 327 58 67 chr11 84840957 84841031 -63942441 + L2 LINE L2 3194 3268 -4 269 320 86 23 chr11 84841185 84841360 -63942112 + MIR SINE MIR 49 234 -28 2078 112 14 0 chr11 84845209 84845494 -63937978 - AluSx SINE Alu -23 289 1 440 280 89 64 chr11 84845704 84845940 -63937532 + MIR SINE MIR 11 252 -10 220 229 21 0 chr11 84846926 84846974 -63936498 + (CATATA)n Simple_repeat Simple_repeat 3 51 0 21 36 0 0 chr11 84847202 84847230 -63936242 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr11 84847297 84847320 -63936152 + AT_rich Low_complexity Low_complexity 1 23 0 364 272 37 105 chr11 84847457 84847619 -63935853 - MIR SINE MIR -95 167 17 2237 135 28 3 chr11 84848143 84848498 -63934974 - THE1B LTR MaLR 0 364 1 3331 154 14 21 chr11 84849018 84849647 -63933825 - L1MC1 LINE L1 0 6333 5709 217 345 17 34 chr11 84849753 84849872 -63933600 - MIR SINE MIR -76 132 16 912 239 31 13 chr11 84850629 84850855 -63932617 - MLT1E LTR MaLR -7 586 357 612 275 51 0 chr11 84850867 84851045 -63932427 - MLT1E LTR MaLR -406 187 1 189 297 119 50 chr11 84851184 84851386 -63932086 - L2 LINE L2 -25 3288 3073 499 254 30 0 chr11 84852892 84853026 -63930446 - MLT1H LTR MaLR -3 546 409 839 249 78 34 chr11 84853438 84853823 -63929649 - L1ME2 LINE L1 -328 5834 5433 453 311 72 28 chr11 84854081 84854261 -63929211 + MIR SINE MIR 20 207 -55 243 354 21 0 chr11 84854697 84854793 -63928679 + MIR SINE MIR 33 130 -78 419 345 29 48 chr11 84855419 84855625 -63927847 + MIR SINE MIR 2 203 -59 605 328 61 9 chr11 84856202 84856431 -63927041 + MIR SINE MIR 5 245 -17 2432 98 0 0 chr11 84856658 84856965 -63926507 + AluSq SINE Alu 1 307 -6 1255 206 94 25 chr11 84856981 84857102 -63926370 + AluJo SINE Alu 1 112 -200 270 0 0 0 chr11 84857102 84857132 -63926340 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 1255 206 94 25 chr11 84857132 84857287 -63926185 + AluJo SINE Alu 112 296 -16 507 250 40 0 chr11 84857482 84857606 -63925866 + LTR33A LTR ERVL 67 195 -328 377 333 28 0 chr11 84857644 84857788 -63925684 + LTR33A LTR ERVL 367 514 -9 230 343 152 0 chr11 84858183 84858288 -63925184 + L2 LINE L2 3151 3271 -1 186 191 0 0 chr11 84858319 84858361 -63925111 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 319 310 48 63 chr11 84858683 84858882 -63924590 - MIR SINE MIR -60 148 3 198 362 0 43 chr11 84860486 84860580 -63922892 + MIR SINE MIR 23 112 -150 183 80 0 0 chr11 84861201 84861226 -63922246 + (GGGAA)n Simple_repeat Simple_repeat 4 28 0 2197 201 9 7 chr11 84861423 84861862 -63921610 + L1MB2 LINE L1 5689 6128 -43 812 149 25 0 chr11 84861862 84861983 -63921489 + FLAM_C SINE Alu 1 124 -19 401 167 48 12 chr11 84862004 84862088 -63921384 - L1 LINE L1 -1348 4798 4712 236 247 21 20 chr11 84862122 84862209 -63921263 + CT-rich Low_complexity Low_complexity 1 87 0 214 209 0 0 chr11 84862243 84862286 -63921186 - L2 LINE L2 -92 3180 3138 3703 184 42 42 chr11 84862303 84862731 -63920741 - L1 LINE L1 -1346 4800 4373 1913 138 25 0 chr11 84862731 84863006 -63920466 - AluSx SINE Alu -30 282 1 3703 184 42 42 chr11 84863006 84863515 -63919957 - L1 LINE L1 -1772 4374 3863 480 224 19 0 chr11 84863716 84863823 -63919649 - AluJb SINE Alu -203 109 1 345 276 29 29 chr11 84864340 84864461 -63919011 + MIR3 SINE MIR 50 171 -37 206 340 0 0 chr11 84864859 84864933 -63918539 + polypyrimidine Low_complexity Low_complexity 1 74 0 21 36 0 0 chr11 84865378 84865406 -63918066 + AT_rich Low_complexity Low_complexity 1 28 0 202 300 0 0 chr11 84865561 84865611 -63917861 + L2 LINE L2 3262 3311 -2 770 268 85 24 chr11 84866053 84866299 -63917173 - MIR SINE MIR 0 262 2 315 322 41 7 chr11 84866301 84866447 -63917025 + MIR SINE MIR 66 216 -46 482 294 48 69 chr11 84866632 84866863 -63916609 - MIR SINE MIR -25 237 12 31 0 0 0 chr11 84867694 84867725 -63915747 + AT_rich Low_complexity Low_complexity 1 31 0 184 321 107 43 chr11 84868140 84868280 -63915192 + MIR3 SINE MIR 2 150 -58 * 187 167 0 0 chr11 84868250 84868286 -63915186 + MIR SINE MIR 118 153 -109 207 332 39 23 chr11 84869178 84869388 -63914084 + L2 LINE L2 2573 2847 -467 7323 24 3 0 chr11 84869400 84870295 -63913177 - L1PA3 LINE L1 0 6155 5258 4986 48 0 0 chr11 84870289 84870940 -63912532 + L1P LINE L1 3368 4018 -2128 * 23 33 0 0 chr11 84871041 84871071 -63912401 + AT_rich Low_complexity Low_complexity 1 30 0 409 281 164 35 chr11 84871073 84871244 -63912228 - MIR SINE MIR -30 232 40 731 220 7 13 chr11 84871572 84871722 -63911750 - AluJb SINE Alu -27 285 137 1039 213 72 52 chr11 84872982 84873344 -63910128 + L1ME1 LINE L1 5768 6136 -30 323 261 108 36 chr11 84873574 84873685 -63909787 - MER5A DNA MER1_type -2 187 69 281 331 84 21 chr11 84874155 84874297 -63909175 + MIR SINE MIR 14 164 -98 721 263 19 5 chr11 84874363 84874572 -63908900 - L1ME3 LINE L1 -2 6160 5949 233 309 111 63 chr11 84875147 84875354 -63908118 + L2 LINE L2 2687 2903 -411 264 191 34 79 chr11 84875829 84875918 -63907554 + MLT1E2 LTR MaLR 1 85 -569 1183 267 86 34 chr11 84875977 84876442 -63907030 + MLT1E2 LTR MaLR 138 626 0 199 340 57 66 chr11 84876894 84877000 -63906472 + L2 LINE L2 3136 3240 -32 445 268 117 11 chr11 84877504 84877678 -63905794 + MIR SINE MIR 56 249 -13 216 189 0 0 chr11 84878467 84878504 -63904968 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 621 260 41 6 chr11 84878552 84878721 -63904751 - MIR SINE MIR -29 233 59 352 228 174 0 chr11 84878808 84878900 -63904572 - L2 LINE L2 -3 3310 3203 210 71 0 0 chr11 84878976 84879004 -63904468 + (AATTG)n Simple_repeat Simple_repeat 4 31 0 420 309 57 21 chr11 84879564 84879758 -63903714 + MIR SINE MIR 58 258 -4 193 379 0 48 chr11 84880687 84880790 -63902682 + MIR SINE MIR 53 150 -58 655 335 125 4 chr11 84881409 84881690 -63901782 - LTR33 LTR ERVL -204 317 3 623 294 25 34 chr11 84881913 84882148 -63901324 + MIR SINE MIR 29 261 -1 198 304 139 0 chr11 84882225 84882304 -63901168 + L2 LINE L2 3170 3259 -13 339 280 11 32 chr11 84883118 84883211 -63900261 - L2 LINE L2 -35 3237 3147 352 296 53 33 chr11 84883838 84883990 -63899482 - MER5A DNA MER1_type 0 189 35 1447 229 121 14 chr11 84884653 84885093 -63898379 - L1ME2 LINE L1 -47 6186 5700 * 5880 261 88 32 chr11 84885091 84887959 -63895513 - L1ME2 LINE L1 -866 5349 2322 26 50 0 0 chr11 84888747 84888787 -63894685 + AT_rich Low_complexity Low_complexity 1 40 0 624 238 142 58 chr11 84889567 84889878 -63893594 - L1ME2 LINE L1 -6038 358 22 249 346 0 0 chr11 84889901 84889979 -63893493 + Charlie8 DNA MER1_type 189 266 -2151 289 317 12 12 chr11 84890181 84890263 -63893209 - MIR SINE MIR -180 82 1 229 307 64 103 chr11 84891328 84891657 -63891815 - L2 LINE L2 -33 3239 2924 385 303 21 33 chr11 84891857 84892015 -63891457 - MIR SINE MIR -15 193 36 268 359 8 8 chr11 84892400 84892517 -63890955 - MIR SINE MIR -109 153 37 305 240 106 0 chr11 84892628 84892732 -63890740 - MER103 DNA DNA -44 122 8 1008 227 55 61 chr11 84893640 84893984 -63889488 - MER2 DNA MER2_type -1 343 2 364 253 139 13 chr11 84894239 84894397 -63889075 + MIR SINE MIR 75 252 -10 894 291 135 36 chr11 84895104 84895621 -63887851 - L2 LINE L2 -3 3310 2744 2370 85 16 7 chr11 84895679 84896155 -63887317 - L1PA10 LINE L1 -266 5902 5256 1491 141 4 27 chr11 84896155 84896409 -63887063 + L1PA10 LINE L1 5907 6163 -5 776 292 153 33 chr11 84896421 84896997 -63886475 - L2 LINE L2 -1138 2176 1532 203 308 46 0 chr11 84897030 84897095 -63886377 - MIR SINE MIR -77 185 118 223 255 47 38 chr11 84897354 84897460 -63886012 + L2 LINE L2 2932 3038 -234 21 0 0 0 chr11 84897958 84897979 -63885493 + AT_rich Low_complexity Low_complexity 1 21 0 308 368 45 0 chr11 84899069 84899202 -63884270 + MIR3 SINE MIR 3 141 -67 220 244 0 0 chr11 84899233 84899278 -63884194 - MIR SINE MIR -88 174 130 533 284 81 34 chr11 84900011 84900247 -63883225 + MIR SINE MIR 16 262 0 * 573 333 63 4 chr11 84900240 84900477 -63882995 + MIR SINE MIR 7 257 -5 237 273 15 0 chr11 84900517 84900583 -63882889 + (TGG)n Simple_repeat Simple_repeat 2 68 0 191 250 12 0 chr11 84900605 84900689 -63882783 + (TGG)n Simple_repeat Simple_repeat 1 85 0 246 280 0 0 chr11 84902268 84902318 -63881154 + MER58B DNA MER1_type 6 55 -286 2290 100 7 0 chr11 84902339 84902648 -63880824 - AluSq SINE Alu -2 311 1 802 238 0 0 chr11 84902651 84902811 -63880661 + MER58B DNA MER1_type 174 333 -8 510 267 79 6 chr11 84902827 84902992 -63880480 + MER5B DNA MER1_type 1 177 -1 198 324 59 53 chr11 84903631 84903801 -63879671 + MIR3 SINE MIR 34 204 -4 308 328 48 8 chr11 84903948 84904073 -63879399 - L2 LINE L2 -24 3289 3160 315 269 0 0 chr11 84904120 84904198 -63879274 - MIR SINE MIR -104 158 81 397 273 78 19 chr11 84904541 84904695 -63878777 + MLT1G1 LTR MaLR 33 195 -400 435 375 134 24 chr11 84904695 84904986 -63878486 + L2 LINE L2 2950 3272 0 405 378 112 16 chr11 84904971 84905400 -63878072 + L3 LINE CR1 838 1307 -270 * 355 316 69 31 chr11 84906006 84906243 -63877229 - MIR SINE MIR -6 256 3 23 92 0 0 chr11 84906684 84906749 -63876723 + AT_rich Low_complexity Low_complexity 1 65 0 408 279 93 29 chr11 84906912 84907084 -63876388 - L1M4 LINE L1 -1730 4416 4234 362 289 75 91 chr11 84907095 84907413 -63876059 - L1ME3A LINE L1 -230 5923 5611 410 277 87 5 chr11 84907415 84907599 -63875873 - L1ME3A LINE L1 -635 5514 5316 311 269 13 10 chr11 84907799 84907922 -63875550 - L1ME3A LINE L1 -1098 5031 4907 409 302 94 25 chr11 84907983 84908601 -63874871 - L1MEd LINE L1 -4641 1669 964 5036 142 71 5 chr11 84908694 84909590 -63873882 - Tigger3b DNA MER2_type -1 1230 275 435 234 32 11 chr11 84909589 84909683 -63873789 - Tigger3b DNA MER2_type -1129 102 7 * 252 171 0 0 chr11 84909808 84909849 -63873623 + MLT1G1 LTR MaLR 154 194 -401 2288 88 0 0 chr11 84909893 84910204 -63873268 - AluSx SINE Alu 0 311 1 730 309 113 32 chr11 84910425 84910887 -63872585 - L1MEd LINE L1 -5487 632 134 300 330 82 65 chr11 84911215 84911521 -63871951 + L2 LINE L2 3003 3313 0 298 302 73 25 chr11 84912000 84912158 -63871314 - MIR SINE MIR -63 199 36 272 297 170 18 chr11 84912495 84912660 -63870812 - MIR SINE MIR -26 236 47 1810 168 12 75 chr11 84913667 84914083 -63869389 + MLT1B LTR MaLR 1 390 0 2039 150 0 16 chr11 84914516 84914829 -63868643 + AluSg SINE Alu 3 310 0 283 374 75 0 chr11 84914832 84914939 -63868533 - L2 LINE L2 -31 3241 3127 189 330 0 34 chr11 84915501 84915589 -63867883 - L3 LINE CR1 -138 1439 1355 199 316 0 0 chr11 84915603 84915660 -63867812 - L2 LINE L2 -16 3297 3241 316 262 162 23 chr11 84917225 84917375 -63866097 - MIR3 SINE MIR -28 180 15 223 276 57 38 chr11 84917957 84918062 -63865410 + MIR SINE MIR 108 214 -48 333 363 28 0 chr11 84918495 84918645 -63864827 + MIR3 SINE MIR 32 192 -51 425 305 48 60 chr11 84918819 84918880 -63864592 - LTR16B LTR ERVL 0 464 404 4874 74 6 11 chr11 84918880 84919542 -63863930 + L1PA8A LINE L1 5471 6129 -2 425 305 48 60 chr11 84919542 84919795 -63863677 - LTR16B LTR ERVL -60 404 154 377 321 38 4 chr11 84920291 84920434 -63863038 + MIR SINE MIR 46 189 -65 217 380 66 8 chr11 84920831 84920952 -63862520 - L2 LINE L2 -4 3268 3141 278 299 13 0 chr11 84921072 84921149 -63862323 + CT-rich Low_complexity Low_complexity 4 81 0 501 330 112 10 chr11 84921198 84921395 -63862077 - MIR SINE MIR -34 228 12 189 321 52 75 chr11 84921883 84922017 -63861455 + MIR3 SINE MIR 9 139 -69 202 255 85 0 chr11 84922501 84922548 -63860924 - L2 LINE L2 0 3272 3222 626 339 23 9 chr11 84922613 84922834 -63860638 + MIR SINE MIR 31 254 -8 21 57 0 0 chr11 84922881 84922916 -63860556 + AT_rich Low_complexity Low_complexity 1 35 0 599 266 48 59 chr11 84923607 84923982 -63859490 - MLT1G LTR MaLR -211 384 1 180 286 16 32 chr11 84923984 84924047 -63859425 - MIR SINE MIR -102 106 45 310 304 54 0 chr11 84924873 84924965 -63858507 - MIR3 SINE MIR -30 178 82 763 196 42 84 chr11 84925097 84925311 -63858161 + MLT1A1 LTR MaLR 1 205 -160 4111 146 32 4 chr11 84925361 84926046 -63857426 - MER50 LTR ERV1 -30 704 1 703 197 28 0 chr11 84926059 84926201 -63857271 + MLT1A1 LTR MaLR 220 365 0 554 293 32 27 chr11 84926201 84926389 -63857083 + MIR3 SINE MIR 11 199 -9 855 213 11 6 chr11 84927487 84927661 -63855811 + MER45A DNA AcHobo 1 175 -3 24 0 0 0 chr11 84928104 84928128 -63855344 + AT_rich Low_complexity Low_complexity 1 24 0 224 213 0 0 chr11 84928411 84928458 -63855014 - L2 LINE L2 -4 3309 3263 252 300 130 0 chr11 84928485 84928585 -63854887 - L2 LINE L2 0 3272 3160 29 0 0 0 chr11 84928674 84928703 -63854769 + AT_rich Low_complexity Low_complexity 1 29 0 800 127 60 0 chr11 84929475 84929625 -63853847 - L1MA4 LINE L1 -5 6295 6137 1940 169 63 5 chr11 84929625 84930004 -63853468 - MER4D LTR ERV1 0 903 503 1850 57 0 4 chr11 84930038 84930268 -63853204 + AluY SINE Alu 1 229 -82 1154 14 0 7 chr11 84930270 84930408 -63853064 + AluY SINE Alu 175 311 0 2648 118 42 15 chr11 84930447 84930903 -63852569 - MER4D LTR ERV1 -435 468 1 3139 148 22 27 chr11 84930903 84931499 -63851973 - L1MA4 LINE L1 -160 6140 5548 990 154 64 39 chr11 84931497 84931730 -63851742 + L1MA4 LINE L1 5323 5561 -742 * 279 279 65 9 chr11 84931978 84932097 -63851375 + MIR SINE MIR 35 162 -46 386 215 97 42 chr11 84932390 84932534 -63850938 + MIR SINE MIR 101 252 -10 2036 51 94 11 chr11 84932688 84932964 -63850508 - AluY SINE Alu -12 299 1 349 314 98 44 chr11 84933251 84933472 -63850000 + MIR SINE MIR 15 245 -17 1291 213 35 78 chr11 84934216 84934604 -63848868 + MLT2D LTR ERVL 1 371 -43 369 62 0 0 chr11 84934604 84934652 -63848820 + (TG)n Simple_repeat Simple_repeat 1 48 0 1291 213 35 78 chr11 84934652 84934685 -63848787 + MLT2D LTR ERVL 371 404 -10 2612 257 125 48 chr11 84935333 84936691 -63846781 + MSTD-int LTR MaLR 189 1651 0 1859 177 50 18 chr11 84936691 84937075 -63846397 + MSTD LTR MaLR 1 396 0 50 65 0 0 chr11 84937181 84937273 -63846199 + AT_rich Low_complexity Low_complexity 1 92 0 279 265 129 18 chr11 84937421 84937591 -63845881 - L1ME3 LINE L1 -20 6142 5954 192 354 15 0 chr11 84937635 84937700 -63845772 + L3b LINE CR1 1510 1575 -8 339 279 130 14 chr11 84938080 84938288 -63845184 - L1ME3 LINE L1 -256 5865 5634 2068 151 5 46 chr11 84939122 84939512 -63843960 - THE1C LTR MaLR -1 374 1 277 263 114 26 chr11 84939880 84939994 -63843478 - L2 LINE L2 -219 3053 2930 263 250 0 0 chr11 84940044 84940108 -63843364 - Tigger7 DNA MER2_type -2223 264 201 232 310 29 63 chr11 84940138 84940312 -63843160 - L2 LINE L2 -525 2789 2622 1095 226 15 0 chr11 84940330 84940595 -63842877 - MER58B DNA MER1_type -1 340 72 285 316 17 26 chr11 84941590 84941707 -63841765 + MIR SINE MIR 3 118 -144 265 282 176 8 chr11 84941899 84942030 -63841442 - MIR SINE MIR -3 259 107 1837 201 28 3 chr11 84942172 84942526 -63840946 - MLT1A1 LTR MaLR 0 365 3 292 270 117 18 chr11 84942627 84942738 -63840734 - MIR SINE MIR -115 147 26 264 299 0 0 chr11 84943855 84943932 -63839540 - MIR SINE MIR -113 149 73 186 43 0 0 chr11 84944323 84944346 -63839126 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 488 268 62 25 chr11 84944761 84944927 -63838545 + MIR SINE MIR 17 195 -62 425 275 77 28 chr11 84945235 84945417 -63838055 - MIR SINE MIR -70 192 2 190 333 151 0 chr11 84945796 84945889 -63837583 + MIR3 SINE MIR 90 196 -12 256 215 46 15 chr11 84946603 84946668 -63836804 - L2 LINE L2 -1 3271 3205 1171 198 5 0 chr11 84946730 84946947 -63836525 - MER20 DNA MER1_type -1 218 1 666 276 33 6 chr11 84947021 84947202 -63836270 + MIR SINE MIR 1 186 -76 203 281 31 0 chr11 84949372 84949436 -63834036 + MIR SINE MIR 84 149 -113 369 75 0 0 chr11 84949910 84949930 -63833542 + (CA)n Simple_repeat Simple_repeat 1 73 0 369 75 0 0 chr11 84949930 84949983 -63833489 + (CA)n Simple_repeat Simple_repeat 2 54 0 415 297 123 0 chr11 84950301 84950439 -63833033 - MER91B DNA MER1_type -5 185 31 789 276 32 20 chr11 84950564 84950814 -63832658 + MIR SINE MIR 7 259 -3 253 300 100 21 chr11 84951181 84951321 -63832151 - MIR SINE MIR -48 214 64 269 273 0 0 chr11 84951390 84951456 -63832016 + (ATG)n Simple_repeat Simple_repeat 1 66 0 183 326 67 34 chr11 84952154 84952243 -63831229 - L2 LINE L2 -30 3242 3151 240 307 34 23 chr11 84952312 84952400 -63831072 - MIR SINE MIR -128 134 46 299 313 52 80 chr11 84952541 84952790 -63830682 + L2 LINE L2 3031 3272 0 497 253 23 63 chr11 84953254 84953428 -63830044 + MIR3 SINE MIR 21 187 -21 650 281 41 49 chr11 84953635 84953881 -63829591 - MIR SINE MIR -12 250 7 409 327 100 23 chr11 84954438 84954658 -63828814 - MIR SINE MIR -6 256 20 182 337 33 0 chr11 84954685 84954777 -63828695 - MIR SINE MIR -76 186 92 7484 26 0 0 chr11 84954777 84955656 -63827816 + L1PA3 LINE L1 5276 6154 -1 1051 187 14 0 chr11 84955732 84955941 -63827531 + Tigger1 DNA MER2_type 1 212 -2206 * 10366 124 20 29 chr11 84955918 84957421 -63826051 + Tigger1 DNA MER2_type 652 2167 -251 2143 116 17 3 chr11 84957421 84957723 -63825749 + AluSg SINE Alu 1 306 -4 10366 124 20 29 chr11 84957723 84957797 -63825675 + Tigger1 DNA MER2_type 2167 2240 -178 1180 75 0 0 chr11 84957797 84957956 -63825516 - L1MA4 LINE L1 -12 6288 6130 10366 124 20 29 chr11 84957956 84958159 -63825313 + Tigger1 DNA MER2_type 2240 2417 -1 849 253 98 79 chr11 84958233 84958601 -63824871 + MER21B LTR ERV1 12 386 -477 * 969 213 61 34 chr11 84958589 84958852 -63824620 + MER21B LTR ERV1 543 812 -51 6102 199 8 4 chr11 84958964 84961048 -63822424 - L1PA15 LINE L1 -4 6161 4067 29965 112 10 55 chr11 84961051 84967481 -63815991 - L1PA7 LINE L1 -8 6146 12 6866 223 13 11 chr11 84967488 84967994 -63815478 - L1PA15 LINE L1 -2061 4085 3582 2749 124 24 2 chr11 84967994 84968413 -63815059 - MSTA LTR MaLR 0 428 1 6866 223 13 11 chr11 84968413 84969701 -63813771 - L1PA15 LINE L1 -2564 3582 2286 275 255 176 28 chr11 84969816 84969939 -63813533 + MER113 DNA MER1_type? 141 244 -277 228 35 0 0 chr11 84969939 84969968 -63813504 + (TA)n Simple_repeat Simple_repeat 2 30 0 275 255 176 28 chr11 84969968 84970060 -63813412 + MER113 DNA MER1_type? 244 388 -133 2061 153 3 3 chr11 84970909 84971216 -63812256 - AluSx SINE Alu -5 307 1 198 0 0 0 chr11 84971247 84971269 -63812203 + (TC)n Simple_repeat Simple_repeat 2 23 0 260 257 283 0 chr11 84971282 84971395 -63812077 + MER5A DNA MER1_type 45 189 0 282 29 0 0 chr11 84971511 84971546 -63811926 + (A)n Simple_repeat Simple_repeat 1 35 0 10260 144 36 12 chr11 84971682 84973413 -63810059 - Tigger1 DNA MER2_type -560 1858 80 1471 164 98 49 chr11 84973413 84973840 -63809632 + LTR7 LTR ERV1 1 448 -2 10260 144 36 12 chr11 84973840 84973922 -63809550 - Tigger1 DNA MER2_type -2338 80 1 2203 140 30 0 chr11 84973989 84974353 -63809119 - LTR43 LTR ERV1 0 602 228 1981 123 18 46 chr11 84974353 84974744 -63808728 - LTR3b LTR ERVK 0 500 121 257 382 147 0 chr11 85075566 85075668 -63707804 + L2 LINE L2 3133 3249 -23 333 301 171 10 chr11 85076110 85076309 -63707163 + MIR SINE MIR 31 261 -1 23 0 0 0 chr11 85076458 85076481 -63706991 + AT_rich Low_complexity Low_complexity 1 23 0 1052 288 114 26 chr11 85076698 85077163 -63706309 + L2 LINE L2 8 513 -2801 572 302 33 0 chr11 85077164 85077346 -63706126 - MER63A DNA MER1_type 0 210 23 548 99 0 12 chr11 85077346 85077427 -63706045 + MADE1 DNA Mariner 1 80 0 189 231 13 77 chr11 85077497 85077575 -63705897 + L2 LINE L2 633 705 -2609 2728 296 225 34 chr11 85077628 85078428 -63705044 + L2 LINE L2 693 1339 -1974 2364 118 0 0 chr11 85078428 85078741 -63704731 + AluSq SINE Alu 1 313 0 2728 296 225 34 chr11 85078741 85079529 -63703943 + L2 LINE L2 1339 1975 -1338 4352 132 12 0 chr11 85079529 85080190 -63703282 + L1PA15 LINE L1 5488 6156 -9 2728 296 225 34 chr11 85080190 85080724 -63702748 + L2 LINE L2 1975 2406 -907 384 59 0 0 chr11 85080724 85080775 -63702697 + (TG)n Simple_repeat Simple_repeat 2 52 0 2728 296 225 34 chr11 85080775 85080870 -63702602 + L2 LINE L2 2406 3313 0 184 232 107 0 chr11 85081161 85081217 -63702255 + MIR SINE MIR 102 163 -99 38 51 0 0 chr11 85081394 85081453 -63702019 + AT_rich Low_complexity Low_complexity 1 59 0 387 301 79 44 chr11 85082588 85082817 -63700655 + MIR SINE MIR 14 250 -12 894 275 13 4 chr11 85082943 85083179 -63700293 - MIR SINE MIR -3 259 22 2393 82 0 19 chr11 85083184 85083542 -63699930 - AluY SINE Alu 0 352 1 404 351 30 59 chr11 85084147 85084418 -63699054 + L2 LINE L2 3008 3270 -2 296 286 45 58 chr11 85084607 85084761 -63698711 + MIR SINE MIR 6 157 -105 679 294 54 77 chr11 85085586 85086052 -63697420 - L2 LINE L2 -1 3312 2858 543 298 11 37 chr11 85087277 85087468 -63696004 + MIR SINE MIR 2 187 -75 180 0 0 0 chr11 85088784 85088804 -63694668 + (TG)n Simple_repeat Simple_repeat 2 21 0 318 294 82 0 chr11 85088887 85088972 -63694500 - L2 LINE L2 -13 3259 3168 313 320 65 20 chr11 85089254 85089437 -63694035 - MIR SINE MIR -54 208 19 2240 90 0 0 chr11 85090044 85090332 -63693140 - AluY SINE Alu 0 311 24 6581 36 0 0 chr11 85090887 85091665 -63691807 - L1PA3 LINE L1 -3 6152 5375 291 311 58 42 chr11 85092461 85092702 -63690770 + L2 LINE L2 2098 2342 -972 539 240 20 34 chr11 85092835 85092981 -63690491 - Charlie8 DNA MER1_type -2158 259 116 184 259 103 0 chr11 85093274 85093332 -63690140 - MIR SINE MIR -6 256 193 2832 259 102 91 chr11 85093342 85094292 -63689180 - HAL1 LINE L1 -5 2502 1564 3365 150 28 71 chr11 85094292 85095012 -63688460 + LTR8 LTR ERV1 3 691 0 2832 259 102 91 chr11 85095012 85095459 -63688013 - HAL1 LINE L1 -943 1564 1123 228 256 39 13 chr11 85095459 85095537 -63687935 + MER3 DNA MER1_type 1 80 -129 188 83 0 28 chr11 85095542 85095578 -63687894 + (TTTAA)n Simple_repeat Simple_repeat 1 35 0 2832 259 102 91 chr11 85095578 85096568 -63686904 - HAL1 LINE L1 -1387 1120 4 247 302 109 58 chr11 85097586 85097861 -63685611 + L2 LINE L2 2369 2657 -657 596 216 52 21 chr11 85098064 85098223 -63685249 - MLT1A1 LTR MaLR 0 375 226 204 247 27 14 chr11 85098246 85098319 -63685153 + GA-rich Low_complexity Low_complexity 2 75 0 713 158 41 34 chr11 85098332 85098478 -63684994 - MLT1A1 LTR MaLR -213 152 6 196 304 235 9 chr11 85098665 85098780 -63684692 + L2 LINE L2 2800 2940 -374 23 33 0 0 chr11 85098905 85098935 -63684537 + AT_rich Low_complexity Low_complexity 1 30 0 204 370 110 8 chr11 85099189 85099316 -63684156 - MIR SINE MIR -119 143 4 1242 224 116 17 chr11 85099431 85099837 -63683635 - MLT1C LTR MaLR -16 451 6 4681 234 53 53 chr11 85099847 85101213 -63682259 - MLT1C-int LTR MaLR -5 1366 1 1664 216 64 16 chr11 85101213 85101649 -63681823 - MLT1C LTR MaLR 0 467 11 312 307 9 26 chr11 85102189 85102303 -63681169 - MIR3 SINE MIR -14 194 83 336 24 0 0 chr11 85102727 85102768 -63680704 + (CA)n Simple_repeat Simple_repeat 2 42 0 31 26 0 0 chr11 85102802 85102840 -63680632 + AT_rich Low_complexity Low_complexity 1 38 0 196 355 43 21 chr11 85103621 85103714 -63679758 - L2 LINE L2 -25 3247 3153 266 321 63 59 chr11 85105036 85105323 -63678149 + L2 LINE L2 2230 2517 -797 2234 122 0 0 chr11 85105473 85105777 -63677695 - AluSq SINE Alu -9 304 1 185 395 142 5 chr11 85105896 85106086 -63677386 + L2 LINE L2 2524 2739 -575 2313 272 62 34 chr11 85106179 85107863 -63675609 + L1MEc LINE L1 1831 3684 -2531 9516 239 35 47 chr11 85107865 85111839 -63671633 + L1PA12 LINE L1 1 3920 -3664 2427 85 3 0 chr11 85111839 85112145 -63671327 - AluSp SINE Alu -5 308 2 9516 239 35 47 chr11 85112145 85112517 -63670955 + L1PA12 LINE L1 3920 4295 -3289 4645 128 22 9 chr11 85112489 85113223 -63670249 + L1PA14 LINE L1 6853 7595 -4 * 312 161 97 0 chr11 85113274 85113336 -63670136 + L1MEc LINE L1 3668 3735 -2480 282 177 52 0 chr11 85113347 85113443 -63670029 + (TA)n Simple_repeat Simple_repeat 1 101 0 495 231 64 89 chr11 85113518 85113924 -63669548 + L1MEc LINE L1 899 1294 -5102 * 590 256 155 28 chr11 85113910 85114161 -63669311 + L1MEc LINE L1 3980 4298 -1917 2206 107 3 0 chr11 85114161 85114451 -63669021 + AluSc SINE Alu 1 291 -18 590 256 155 28 chr11 85114451 85114586 -63668886 + L1MEc LINE L1 4298 4415 -1800 1439 262 99 38 chr11 85114596 85115744 -63667728 + L1MEc LINE L1 4520 5737 -494 347 266 53 9 chr11 85116247 85116360 -63667112 + MLT1L LTR MaLR 150 267 -348 536 288 88 20 chr11 85116404 85116654 -63666818 + MLT1L LTR MaLR 349 615 0 292 341 159 23 chr11 85116791 85117011 -63666461 + MIR SINE MIR 13 262 0 21 0 0 0 chr11 85117170 85117191 -63666281 + AT_rich Low_complexity Low_complexity 1 21 0 382 351 13 13 chr11 85117212 85117363 -63666109 - MIR SINE MIR -96 166 16 861 108 0 0 chr11 85117485 85117596 -63665876 - FLAM_C SINE Alu -32 111 1 198 71 0 0 chr11 85118598 85118626 -63664846 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 189 0 0 0 chr11 85118890 85118911 -63664561 + (TG)n Simple_repeat Simple_repeat 2 22 0 374 335 0 37 chr11 85119625 85119786 -63663686 + MER5A DNA MER1_type 7 161 -28 388 306 105 34 chr11 85120059 85120268 -63663204 - MIR SINE MIR -26 236 13 194 59 88 0 chr11 85120348 85120382 -63663090 + T-rich Low_complexity Low_complexity 1 37 0 342 0 0 0 chr11 85120857 85120895 -63662577 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 380 255 20 0 chr11 85120989 85121087 -63662385 + LTR43 LTR ERV1 189 288 -314 475 277 110 13 chr11 85122786 85123004 -63660468 + MIR SINE MIR 19 256 -6 548 301 63 44 chr11 85123201 85123407 -63660065 - MIR SINE MIR -44 218 9 223 310 46 0 chr11 85123474 85123561 -63659911 - L2 LINE L2 -1156 2158 2068 241 352 6 44 chr11 85123591 85123750 -63659722 + MLT1L LTR MaLR 8 160 -455 186 246 110 59 chr11 85124796 85124914 -63658558 - L3 LINE CR1 -1 1576 1453 2097 117 3 3 chr11 85125159 85125457 -63658015 - AluSx SINE Alu -14 298 1 193 340 11 11 chr11 85125468 85125562 -63657910 - L3 LINE CR1 -188 1389 1296 1345 206 115 28 chr11 85125664 85126028 -63657444 + MSTD LTR MaLR 1 396 0 241 369 76 34 chr11 85126101 85126337 -63657135 - L3 LINE CR1 -431 1146 901 264 59 0 0 chr11 85126738 85126772 -63656700 + (CA)n Simple_repeat Simple_repeat 2 35 0 199 27 27 54 chr11 85128140 85128177 -63655295 + (TAAAAA)n Simple_repeat Simple_repeat 1 36 0 346 344 53 13 chr11 85128299 85128526 -63654946 + MLT1L LTR MaLR 159 394 -221 277 302 57 0 chr11 85128669 85128775 -63654697 + MLT1L LTR MaLR 503 614 -1 2302 103 0 6 chr11 85129159 85129521 -63653951 + AluSg SINE Alu 1 360 0 912 292 22 6 chr11 85129767 85130065 -63653407 - MLT1E3 LTR MaLR -79 545 201 249 304 157 0 chr11 85130101 85130203 -63653269 - MLT1E3 LTR MaLR -473 120 3 1831 154 7 7 chr11 85130369 85130668 -63652804 - MSTA LTR MaLR 0 428 130 1996 187 34 90 chr11 85130698 85131285 -63652187 - MLT2B3 LTR ERVL 0 554 1 299 338 15 23 chr11 85131289 85131422 -63652050 + MIR SINE MIR 119 250 -12 293 289 189 36 chr11 85131472 85131721 -63651751 + L2 LINE L2 2687 2973 -341 316 265 0 12 chr11 85132259 85132342 -63651130 + MIR SINE MIR 180 261 -1 849 272 18 9 chr11 85132422 85132646 -63650826 + MIR SINE MIR 30 255 -7 226 213 0 0 chr11 85132695 85132742 -63650730 + (CA)n Simple_repeat Simple_repeat 2 48 0 246 208 0 0 chr11 85133045 85133098 -63650374 + (TTCA)n Simple_repeat Simple_repeat 1 53 0 213 121 0 0 chr11 85133574 85133607 -63649865 + (CAT)n Simple_repeat Simple_repeat 3 35 0 1275 137 4 31 chr11 85133623 85133849 -63649623 - L1PA16 LINE L1 -12 6154 5935 336 227 19 26 chr11 85134999 85135153 -63648319 + GA-rich Low_complexity Low_complexity 3 155 0 25 0 0 0 chr11 85135879 85135904 -63647568 + AT_rich Low_complexity Low_complexity 1 25 0 285 296 43 26 chr11 85136279 85136394 -63647078 + MIR SINE MIR 146 262 0 298 291 87 35 chr11 85137305 85137485 -63645987 + MIR SINE MIR 3 188 -62 2206 92 48 3 chr11 85137713 85138008 -63645464 + AluY SINE Alu 1 308 -3 3728 173 81 40 chr11 85138201 85139644 -63643828 - L1MA6 LINE L1 -13 6287 4789 2044 256 37 43 chr11 85139642 85140605 -63642867 - L1M1 LINE L1 -4427 3138 2181 * 2719 221 21 13 chr11 85140621 85141321 -63642151 - Tigger7 DNA MER2_type 0 2587 1 1738 284 76 38 chr11 85141322 85141457 -63642015 - L1M3e LINE L1 -5016 2014 1886 2116 147 0 3 chr11 85141457 85141769 -63641703 - AluSx SINE Alu 0 312 2 1738 284 76 38 chr11 85141769 85142447 -63641025 - L1M3e LINE L1 -5144 1886 1170 1250 185 147 16 chr11 85142448 85142761 -63640711 - L1M3e LINE L1 -6674 356 3 1974 70 0 0 chr11 85142785 85143027 -63640445 - AluY SINE Alu -69 242 1 25 51 0 0 chr11 85143195 85143234 -63640238 + AT_rich Low_complexity Low_complexity 1 39 0 230 194 125 42 chr11 85144063 85144135 -63639337 + MER5A DNA MER1_type 1 78 -111 2336 107 3 0 chr11 85144135 85144443 -63639029 + AluSg SINE Alu 1 309 -1 579 243 36 0 chr11 85144463 85144574 -63638898 + MER5A DNA MER1_type 61 175 -14 284 274 9 9 chr11 85144615 85144721 -63638751 - MSTC LTR MaLR -308 120 15 1485 245 3 30 chr11 85144729 85145097 -63638375 + MLT1A1 LTR MaLR 8 365 0 7214 219 81 6 chr11 85145097 85146710 -63636762 + MLT1A1-int LTR MaLR 1 1735 0 1544 240 30 25 chr11 85146711 85147073 -63636399 + MLT1A1 LTR MaLR 2 365 0 204 350 39 39 chr11 85147252 85147355 -63636117 + MIR SINE MIR 30 132 -76 239 314 73 0 chr11 85147536 85147660 -63635812 - MIR SINE MIR -1 261 129 294 282 0 19 chr11 85149486 85149590 -63633882 + MIR SINE MIR 5 103 -109 22 88 0 0 chr11 85149663 85149720 -63633752 + AT_rich Low_complexity Low_complexity 1 57 0 195 245 20 102 chr11 85149975 85150073 -63633399 + MIR SINE MIR 106 195 -67 839 205 56 60 chr11 85150831 85151065 -63632407 + MLT1D LTR MaLR 202 434 -71 24659 106 88 61 chr11 85151065 85157039 -63626433 + L1PA7 LINE L1 18 6152 -2 425 293 78 45 chr11 85158096 85158338 -63625134 + MIR SINE MIR 1 250 -12 1152 173 96 22 chr11 85158710 85158982 -63624490 + MER39 LTR ERV1 357 648 -59 972 157 0 0 chr11 85159132 85159279 -63624193 - AluSg/x SINE Alu -23 289 143 288 0 0 0 chr11 85159444 85159476 -63623996 + (TTA)n Simple_repeat Simple_repeat 3 34 0 319 344 37 11 chr11 85160598 85160953 -63622519 - L1ME4a LINE L1 -215 5906 5543 24 77 0 0 chr11 85162227 85162279 -63621193 + AT_rich Low_complexity Low_complexity 1 52 0 1995 149 103 0 chr11 85162920 85163308 -63620164 + MSTA LTR MaLR 1 428 0 2439 138 48 19 chr11 85163308 85163640 -63619832 + MSTA-int LTR MaLR 1 351 -1300 3214 149 39 4 chr11 85163640 85164149 -63619323 + MER1A DNA MER1_type 1 527 0 2439 138 48 19 chr11 85164149 85164279 -63619193 + MSTA-int LTR MaLR 351 476 -1175 2079 161 3 0 chr11 85164280 85164591 -63618881 + AluSx SINE Alu 1 312 0 22 0 0 0 chr11 85164605 85164627 -63618845 + AT_rich Low_complexity Low_complexity 1 22 0 506 286 70 6 chr11 85166825 85166996 -63616476 + MER5A DNA MER1_type 3 184 -5 367 338 164 28 chr11 85167081 85167623 -63615849 + L2 LINE L2 2125 2740 -574 359 222 25 12 chr11 85168885 85168966 -63614506 - MIR SINE MIR -101 161 80 269 326 157 14 chr11 85168994 85169141 -63614331 - L2 LINE L2 -1 3271 3104 189 0 0 0 chr11 85169227 85169248 -63614224 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 370 195 65 13 chr11 85169512 85169589 -63613883 - MER91B DNA MER1_type -109 81 1 * 491 338 34 19 chr11 85169589 85169794 -63613678 - MIR SINE MIR -34 228 21 443 325 115 65 chr11 85171248 85171725 -63611747 - L2 LINE L2 0 3313 2813 2867 191 35 54 chr11 85171909 85172685 -63610787 + L1PB3 LINE L1 5387 6147 -7 281 214 10 39 chr11 85172982 85172994 -63610478 + (TA)n Simple_repeat Simple_repeat 1 12 -88 2309 77 3 13 chr11 85172994 85173293 -63610179 + AluY SINE Alu 1 296 -15 281 214 10 39 chr11 85173293 85173383 -63610089 + (TA)n Simple_repeat Simple_repeat 12 100 0 28 48 0 0 chr11 85173448 85173490 -63609982 + AT_rich Low_complexity Low_complexity 1 42 0 219 345 24 12 chr11 85173663 85173747 -63609725 + MIR SINE MIR 60 144 -64 670 134 0 0 chr11 85173752 85173849 -63609623 + U6 snRNA snRNA 1 97 -10 24 77 0 0 chr11 85173849 85173901 -63609571 + AT_rich Low_complexity Low_complexity 1 52 0 439 360 139 18 chr11 85174071 85174566 -63608906 - L3 LINE CR1 -3 1574 1020 275 194 28 56 chr11 85174674 85174719 -63608753 + MIR SINE MIR 193 237 -25 3637 174 50 6 chr11 85174719 85175393 -63608079 - MER44D DNA MER2_type 0 705 2 275 194 28 56 chr11 85175393 85175419 -63608053 + MIR SINE MIR 237 262 0 432 350 48 39 chr11 85175433 85175744 -63607728 - L3 LINE CR1 -647 930 617 300 269 103 90 chr11 85176198 85176300 -63607172 - MIR3 SINE MIR -4 204 98 2352 97 0 3 chr11 85176300 85176608 -63606864 + AluY SINE Alu 1 307 -4 300 269 103 90 chr11 85176608 85176661 -63606811 - MIR3 SINE MIR -110 98 47 2579 133 80 4 chr11 85177081 85177532 -63605940 - LTR1 LTR ERV1 -8 777 293 4770 149 193 100 chr11 85177543 85179103 -63604369 - pTR5 LTR ERV1 0 2438 734 1404 109 14 9 chr11 85179190 85179410 -63604062 - LTR1 LTR ERV1 -533 252 32 401 328 39 35 chr11 85179686 85179918 -63603554 - MIR SINE MIR -10 252 20 182 186 41 134 chr11 85180448 85180545 -63602927 - L3 LINE CR1 -367 1210 1123 21 0 0 0 chr11 85181112 85181133 -63602339 + AT_rich Low_complexity Low_complexity 1 21 0 999 225 1 13 chr11 85181141 85181198 -63602274 - MIR SINE MIR -12 250 194 2148 110 0 3 chr11 85181198 85181490 -63601982 + AluSg SINE Alu 1 291 -19 999 225 1 13 chr11 85181490 85181656 -63601816 - MIR SINE MIR -68 194 30 406 291 162 0 chr11 85182464 85182612 -63600860 + MIR SINE MIR 75 246 -16 2143 128 0 7 chr11 85182623 85182928 -63600544 - AluSc SINE Alu -6 303 1 187 328 30 15 chr11 85182979 85183046 -63600426 + MIR SINE MIR 74 141 -67 22 0 0 0 chr11 85183118 85183140 -63600332 + AT_rich Low_complexity Low_complexity 1 22 0 2193 96 0 0 chr11 85184617 85184944 -63598528 + AluY SINE Alu 1 327 0 23 54 0 0 chr11 85185674 85185711 -63597761 + AT_rich Low_complexity Low_complexity 1 37 0 24 32 0 0 chr11 85185878 85185909 -63597563 + AT_rich Low_complexity Low_complexity 1 31 0 277 237 31 64 chr11 85185911 85186080 -63597392 - L1M3 LINE L1 -462 5659 5531 * 5441 162 32 16 chr11 85186046 85187390 -63596082 + L1MA4A LINE L1 4595 5967 -336 2203 123 3 0 chr11 85187390 85187698 -63595774 + AluSx SINE Alu 1 309 -3 5441 162 32 16 chr11 85187698 85188036 -63595436 + L1MA4A LINE L1 5967 6298 -5 290 308 77 0 chr11 85189186 85189264 -63594208 - MER81 DNA DNA -30 84 1 689 280 23 5 chr11 85189863 85190077 -63593395 - MER58A DNA MER1_type -6 218 1 209 315 0 0 chr11 85190642 85190696 -63592776 - MER5B DNA MER1_type 0 178 125 821 231 32 52 chr11 85190702 85191010 -63592462 + L1ME2 LINE L1 5088 5389 -757 975 332 25 14 chr11 85191029 85191393 -63592079 + L1PA16 LINE L1 243 610 -6177 1745 253 55 44 chr11 85191484 85192053 -63591419 + L1PA16 LINE L1 1330 1904 -4883 553 125 31 10 chr11 85192085 85192181 -63591291 + MER4A LTR ERV1 1 98 -566 11609 215 26 21 chr11 85192211 85194067 -63589405 + L1PA16 LINE L1 2741 4586 -2231 2070 118 3 0 chr11 85194067 85194356 -63589116 + AluSg SINE Alu 1 290 -20 11609 215 26 21 chr11 85194356 85196359 -63587113 + L1PA16 LINE L1 4586 6628 -189 1494 249 52 30 chr11 85196394 85196889 -63586583 + L1ME2 LINE L1 5649 6154 -10 207 244 0 0 chr11 85196999 85197044 -63586428 + (TGGA)n Simple_repeat Simple_repeat 2 46 0 197 303 227 0 chr11 85197180 85197246 -63586226 + MER5B DNA MER1_type 98 178 0 24 32 0 0 chr11 85197524 85197555 -63585917 + AT_rich Low_complexity Low_complexity 1 31 0 1146 263 94 45 chr11 85197896 85198305 -63585167 + MLT2B2 LTR ERVL 1 439 -76 2207 107 0 7 chr11 85198305 85198605 -63584867 - AluSc SINE Alu -9 300 3 1146 263 94 45 chr11 85198605 85198686 -63584786 + MLT2B2 LTR ERVL 439 515 0 240 336 53 18 chr11 85198785 85198898 -63584574 + L2 LINE L2 3137 3253 -19 452 329 29 13 chr11 85199012 85199187 -63584285 - MIR SINE MIR -67 141 3 219 269 0 127 chr11 85200064 85200198 -63583274 - L2 LINE L2 -231 3041 2925 240 346 92 18 chr11 85200421 85200649 -63582823 - L2 LINE L2 -641 2673 2429 595 315 49 0 chr11 85201047 85201250 -63582222 + MIR SINE MIR 8 220 -42 285 320 72 8 chr11 85201249 85201374 -63582098 + L2 LINE L2 3177 3309 -4 * 26 50 0 0 chr11 85201750 85201790 -63581682 + AT_rich Low_complexity Low_complexity 1 40 0 688 301 61 87 chr11 85202248 85202857 -63580615 + L2 LINE L2 2715 3308 -5 236 373 101 0 chr11 85202865 85203023 -63580449 - MIR SINE MIR -75 187 14 294 366 23 8 chr11 85203221 85203352 -63580120 + MIR SINE MIR 29 161 -101 801 232 54 54 chr11 85203449 85203489 -63579983 - MER58A DNA MER1_type -2196 224 185 2091 137 0 0 chr11 85203489 85203789 -63579683 + AluSg SINE Alu 1 300 -10 801 232 54 54 chr11 85203789 85203972 -63579500 - MER58A DNA MER1_type -2234 186 1 195 266 149 21 chr11 85204700 85204794 -63578678 + L2 LINE L2 2905 3010 -262 1708 194 28 34 chr11 85204892 85205279 -63578193 + MER89 LTR ERV1 175 559 0 257 318 123 31 chr11 85206158 85206353 -63577119 + MIR SINE MIR 2 214 -48 182 424 43 0 chr11 85207125 85207217 -63576255 - L2 LINE L2 -5 3308 3213 422 286 39 44 chr11 85207407 85207589 -63575883 - L2 LINE L2 -702 2612 2432 214 340 52 10 chr11 85207600 85207697 -63575775 + L2 LINE L2 2686 2786 -528 211 242 0 16 chr11 85207936 85207998 -63575474 + T-rich Low_complexity Low_complexity 4 64 0 213 39 0 0 chr11 85208193 85208219 -63575253 + (CA)n Simple_repeat Simple_repeat 1 26 0 204 328 59 17 chr11 85208894 85209013 -63574459 + MIR SINE MIR 107 230 -32 467 342 139 42 chr11 85209663 85210602 -63572870 + L2 LINE L2 2220 3236 -36 2333 277 266 15 chr11 85210642 85211923 -63571549 + L2 LINE L2 1375 2977 -337 2422 142 37 3 chr11 85211945 85212674 -63570798 - L1PB1 LINE L1 -554 5597 4852 3773 103 0 11 chr11 85212681 85213223 -63570249 + L1PB1 LINE L1 5615 6150 -1 2671 93 3 0 chr11 85213497 85213851 -63569621 + THE1A LTR MaLR 1 355 0 950 221 146 14 chr11 85214048 85214405 -63569067 + L1M4 LINE L1 4399 4802 -1344 317 278 62 7 chr11 85214567 85214711 -63568761 + L1MA10 LINE L1 6181 6332 -2 556 267 80 73 chr11 85214731 85215019 -63568453 + L2 LINE L2 3022 3311 -2 257 303 142 0 chr11 85215247 85215402 -63568070 - L1ME4a LINE L1 -9 6112 5936 257 282 70 0 chr11 85216809 85216880 -63566592 - L2 LINE L2 0 3313 3238 469 360 53 4 chr11 85217011 85217236 -63566236 + MIR SINE MIR 11 246 -16 4690 181 17 16 chr11 85217473 85218247 -63565225 - L1MB3 LINE L1 0 6183 5411 2511 111 6 0 chr11 85218247 85218599 -63564873 - THE1A LTR MaLR 0 355 2 11144 98 15 7 chr11 85218600 85220167 -63563305 - THE1A-int LTR MaLR 0 1580 1 2401 107 8 6 chr11 85220167 85220521 -63562951 - THE1A LTR MaLR 0 355 1 4690 181 17 16 chr11 85220521 85220646 -63562826 - L1MB3 LINE L1 -771 5412 5280 203 235 59 0 chr11 85221033 85221084 -63562388 + L3 LINE CR1 1401 1454 -123 4041 236 86 62 chr11 85221954 85223765 -63559707 + L1MD1 LINE L1 3067 4921 -1225 1133 196 40 37 chr11 85223771 85224067 -63559405 + L1MD1 LINE L1 5945 6241 -1 2142 131 0 0 chr11 85224147 85224444 -63559028 - AluSc SINE Alu -12 297 1 530 307 83 55 chr11 85224492 85224640 -63558832 - MIR SINE MIR 0 262 103 1696 144 0 81 chr11 85224640 85224960 -63558512 + AluSx SINE Alu 1 294 -18 530 307 83 55 chr11 85224960 85225065 -63558407 - MIR SINE MIR -159 103 2 180 0 0 0 chr11 85226495 85226515 -63556957 + (A)n Simple_repeat Simple_repeat 1 20 0 229 276 69 23 chr11 85227223 85227310 -63556162 - MIR SINE MIR -13 249 159 623 268 80 110 chr11 85227378 85228115 -63555357 + L2 LINE L2 2559 3288 -25 190 366 131 9 chr11 85228215 85228436 -63555036 - MIR SINE MIR -1 261 14 382 291 67 62 chr11 85228498 85228708 -63554764 + LTR33 LTR ERVL 53 263 -258 261 175 0 63 chr11 85228750 85228813 -63554659 - Ricksha DNA DNA -1142 904 846 759 152 0 0 chr11 85228825 85229364 -63554108 + (TA)n Simple_repeat Simple_repeat 1 539 0 1881 222 32 34 chr11 85230216 85230658 -63552814 - MLT2B3 LTR ERVL -39 515 75 335 214 0 0 chr11 85230755 85230825 -63552647 - MLT2B3 LTR ERVL -483 71 2 637 254 40 54 chr11 85231118 85231342 -63552130 - MIR SINE MIR -10 252 32 2112 112 10 0 chr11 85231399 85231693 -63551779 + AluSp SINE Alu 1 297 -16 383 308 150 30 chr11 85232935 85233169 -63550303 - MIR SINE MIR 0 262 1 520 345 64 0 chr11 85233390 85233593 -63549879 + MIR SINE MIR 47 262 0 197 343 38 9 chr11 85233623 85233728 -63549744 - MIR SINE MIR -74 188 81 669 302 49 29 chr11 85235214 85235624 -63547848 + L1ME3A LINE L1 5479 5896 -274 565 212 0 0 chr11 85235717 85235849 -63547623 + L1PB4 LINE L1 3355 3486 -2660 * 4227 202 34 19 chr11 85235841 85237254 -63546218 + L1PB4 LINE L1 4729 6154 -2 232 123 15 15 chr11 85237537 85237602 -63545870 + (TA)n Simple_repeat Simple_repeat 2 66 0 2147 90 11 4 chr11 85237602 85237881 -63545591 - AluSg SINE Alu -24 286 6 26 0 0 0 chr11 85237887 85237913 -63545559 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr11 85237983 85238004 -63545468 + AT_rich Low_complexity Low_complexity 1 21 0 649 309 28 14 chr11 85239389 85239606 -63543866 - MIR SINE MIR -3 259 40 5361 55 12 0 chr11 85241129 85241805 -63541667 + L1PA7 LINE L1 5464 6147 -7 1869 146 7 4 chr11 85242421 85242702 -63540770 - AluJb SINE Alu -30 282 1 1023 170 13 74 chr11 85242795 85243024 -63540448 + MER20 DNA MER1_type 1 215 -4 420 76 15 0 chr11 85243731 85243797 -63539675 + Alu SINE Alu 242 308 -3 1198 140 6 0 chr11 85243797 85243968 -63539504 + AluSg/x SINE Alu 127 298 -12 250 228 0 0 chr11 85243968 85244025 -63539447 - MLT1L LTR MaLR -14 601 545 639 273 55 42 chr11 85244203 85244533 -63538939 + L1MEc LINE L1 246 579 -5817 1203 201 52 39 chr11 85244874 85245517 -63537955 - L1P5 LINE L1 -628 5528 4888 188 238 38 76 chr11 85246980 85247085 -63536387 - MIR SINE MIR 0 262 162 195 278 133 11 chr11 85248027 85248117 -63535355 + MIR SINE MIR 44 144 -64 1167 276 25 79 chr11 85248414 85248856 -63534616 + MLT1H LTR MaLR 7 424 -125 2186 90 11 0 chr11 85249163 85249441 -63534031 - AluSg SINE Alu -29 281 1 287 254 106 63 chr11 85250515 85250704 -63532768 - L2 LINE L2 0 3313 3117 188 232 125 0 chr11 85250721 85250777 -63532695 + L2 LINE L2 3206 3268 -45 * 606 272 30 68 chr11 85250759 85250886 -63532586 - MIR SINE MIR -30 232 113 2312 95 0 0 chr11 85250886 85251220 -63532252 + AluSg SINE Alu 1 334 0 606 272 30 68 chr11 85251220 85251324 -63532148 - MIR SINE MIR -149 113 7 250 357 0 24 chr11 85251498 85251624 -63531848 + MIR SINE MIR 3 125 -137 207 330 11 33 chr11 85251722 85251813 -63531659 + L2 LINE L2 3224 3312 -1 498 282 44 68 chr11 85252032 85252238 -63531234 - MER46C DNA MER2_type -9 329 129 181 405 117 9 chr11 85252809 85252920 -63530552 - MIR SINE MIR -132 130 8 270 331 152 57 chr11 85254052 85254387 -63529085 + L2 LINE L2 2897 3263 -9 2101 125 0 10 chr11 85255110 85255413 -63528059 - AluSc SINE Alu -9 300 1 272 156 0 89 chr11 85255762 85255842 -63527630 - MIR SINE MIR -94 114 58 182 176 0 0 chr11 85255956 85255990 -63527482 - L2 LINE L2 -25 3247 3214 297 319 43 17 chr11 85256197 85256313 -63527159 - MIR SINE MIR -30 232 114 200 311 53 38 chr11 85256308 85256440 -63527032 - L2 LINE L2 -1005 2309 2176 * 256 267 105 0 chr11 85256503 85256589 -63526883 - MER53 DNA DNA -94 95 1 2126 126 51 8 chr11 85257090 85257446 -63526026 - THE1C LTR MaLR 0 375 5 491 358 21 25 chr11 85258374 85258617 -63524855 - MIR SINE MIR -1 261 20 222 143 24 0 chr11 85258635 85258677 -63524795 + (CATA)n Simple_repeat Simple_repeat 2 44 0 22 80 0 0 chr11 85258945 85258995 -63524477 + AT_rich Low_complexity Low_complexity 1 50 0 249 108 0 0 chr11 85259554 85259591 -63523881 + (TCCC)n Simple_repeat Simple_repeat 4 40 0 903 105 17 28 chr11 85259617 85259798 -63523674 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1167 196 0 10 chr11 85259839 85260043 -63523429 - AluJo SINE Alu -106 206 5 335 273 40 0 chr11 85260045 85260144 -63523328 + MIR SINE MIR 90 192 -70 398 324 110 9 chr11 85260583 85260802 -63522670 - MIR SINE MIR -1 261 21 258 136 0 0 chr11 85261820 85261864 -63521608 + (TCCCC)n Simple_repeat Simple_repeat 2 45 0 263 222 48 0 chr11 85261868 85261931 -63521541 + CT-rich Low_complexity Low_complexity 5 70 0 407 254 109 7 chr11 85262099 85262237 -63521235 + MIR SINE MIR 48 199 -63 261 310 187 13 chr11 85262313 85262468 -63521004 - MIR SINE MIR -80 182 1 273 323 71 45 chr11 85263022 85263177 -63520295 + L2 LINE L2 2636 2794 -520 358 397 55 40 chr11 85263268 85263648 -63519824 + L2 LINE L2 2887 3272 0 254 385 10 0 chr11 85263688 85263784 -63519688 - L2 LINE L2 -19 3253 3157 2198 92 0 39 chr11 85264013 85264318 -63519154 + AluSg1 SINE Alu 1 293 -16 345 214 29 0 chr11 85264318 85264388 -63519084 + L1ME3A LINE L1 6045 6116 -54 192 125 0 0 chr11 85264833 85264865 -63518607 + (TTTTC)n Simple_repeat Simple_repeat 5 36 0 254 303 9 28 chr11 85265195 85265304 -63518168 + A-rich Low_complexity Low_complexity 4 110 0 349 318 24 0 chr11 85265373 85265499 -63517973 + MIR SINE MIR 49 177 -85 1414 174 103 0 chr11 85265516 85265797 -63517675 + AluSx SINE Alu 1 310 -2 306 298 13 93 chr11 85266441 85266592 -63516880 + MER5B DNA MER1_type 10 148 -30 207 209 0 0 chr11 85266802 85266845 -63516627 + T-rich Low_complexity Low_complexity 1 43 0 1987 167 45 3 chr11 85266846 85267224 -63516248 - L1PA15 LINE L1 -1 6164 5771 193 194 0 0 chr11 85267276 85267312 -63516160 + MER5B DNA MER1_type 141 176 -2 252 357 121 1 chr11 85267318 85267439 -63516033 - MIR3 SINE MIR -52 156 23 220 296 68 57 chr11 85267599 85267775 -63515697 + MIR SINE MIR 41 218 -44 273 311 51 64 chr11 85268205 85268413 -63515059 + MIR SINE MIR 55 261 -1 700 246 170 18 chr11 85269052 85269276 -63514196 + MIR SINE MIR 5 262 0 2981 174 26 64 chr11 85269295 85269826 -63513646 - L1MA7 LINE L1 -2 6289 5788 2291 109 0 10 chr11 85269826 85270139 -63513333 - AluSg SINE Alu 0 310 1 2981 174 26 64 chr11 85270139 85270293 -63513179 - L1MA7 LINE L1 -503 5788 5630 1197 155 57 4 chr11 85270292 85270537 -63512935 + L1 LINE L1 5101 5358 -788 * 429 291 131 37 chr11 85272537 85272805 -63510667 + MER102a DNA MER1_type 37 329 -1 207 376 121 7 chr11 85272881 85273030 -63510442 + MIR SINE MIR 76 241 -21 297 262 172 0 chr11 85274261 85274383 -63509089 + MIR3 SINE MIR 39 181 -27 251 347 0 0 chr11 85274576 85274674 -63508798 + (TCCA)n Simple_repeat Simple_repeat 1 98 0 231 61 0 0 chr11 85275076 85275109 -63508363 + (TC)n Simple_repeat Simple_repeat 1 33 0 369 271 156 0 chr11 85275196 85275318 -63508154 - MIR SINE MIR -41 221 81 214 271 25 12 chr11 85275734 85275860 -63507612 - MIR SINE MIR -65 197 35 398 287 159 20 chr11 85276048 85276243 -63507229 - MIR SINE MIR -7 255 34 216 0 0 0 chr11 85276401 85276425 -63507047 + (T)n Simple_repeat Simple_repeat 1 24 0 501 217 6 60 chr11 85276437 85276603 -63506869 + MER106A DNA MER1_type 66 222 -14 319 342 44 18 chr11 85276887 85277001 -63506471 - L2 LINE L2 -7 3265 3149 204 338 15 15 chr11 85277404 85277472 -63506000 - L2 LINE L2 -8 3305 3238 221 0 35 0 chr11 85277542 85277571 -63505901 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 381 197 91 45 chr11 85278273 85278405 -63505067 - L1ME4a LINE L1 -22 6099 5962 362 370 24 52 chr11 85278681 85278930 -63504542 - L2 LINE L2 -4 3268 3027 227 319 43 11 chr11 85279199 85279293 -63504179 - L1ME LINE L1 -461 5660 5564 296 377 42 34 chr11 85279357 85279596 -63503876 - MIR SINE MIR 0 262 22 230 344 169 0 chr11 85280323 85280477 -63502995 + MIR SINE MIR 11 190 -72 40 37 0 0 chr11 85280534 85280588 -63502884 + AT_rich Low_complexity Low_complexity 1 54 0 197 299 97 52 chr11 85280726 85280860 -63502612 + MIR SINE MIR 47 186 -76 874 261 62 0 chr11 85282000 85282211 -63501261 + MER58A DNA MER1_type 1 224 0 359 314 14 43 chr11 85282669 85282809 -63500663 + L2 LINE L2 3137 3272 0 453 294 72 82 chr11 85282923 85283324 -63500148 + MLT1J LTR MaLR 110 506 -5 2063 121 0 0 chr11 85283410 85283691 -63499781 + AluSq SINE Alu 1 281 -32 298 346 69 15 chr11 85283770 85283972 -63499500 - MIR SINE MIR -27 235 23 212 57 0 29 chr11 85283976 85284011 -63499461 + (TAAAA)n Simple_repeat Simple_repeat 1 34 0 234 290 0 0 chr11 85284074 85284167 -63499305 - L1 LINE L1 -2352 3794 3702 1497 198 32 37 chr11 85284574 85284948 -63498524 + MLT1A2 LTR MaLR 1 372 -2 284 379 25 6 chr11 85285707 85285868 -63497604 - MIR SINE MIR -98 164 1 710 317 10 0 chr11 85286311 85286516 -63496956 + MIR SINE MIR 37 243 -19 2009 129 7 3 chr11 85286547 85286842 -63496630 - AluSg SINE Alu -14 296 1 313 237 21 32 chr11 85287721 85287814 -63495658 + L2 LINE L2 3203 3294 -19 240 358 169 61 chr11 85288098 85288489 -63494983 + L2 LINE L2 2824 3256 -16 304 348 7 15 chr11 85288534 85288671 -63494801 - MIR3 SINE MIR -69 139 14 2387 78 0 23 chr11 85288736 85289043 -63494429 - AluY SINE Alu -11 300 1 461 317 81 23 chr11 85289251 85289472 -63494000 - MIR SINE MIR -21 241 8 993 286 94 27 chr11 85290413 85290815 -63492657 - LTR16A LTR ERVL -6 444 16 201 175 0 0 chr11 85290998 85291038 -63492434 + GA-rich Low_complexity Low_complexity 5 44 0 2011 146 7 3 chr11 85291910 85292218 -63491254 + AluSc SINE Alu 1 309 0 209 194 20 20 chr11 85292347 85292445 -63491027 + (TA)n Simple_repeat Simple_repeat 1 98 0 378 299 7 7 chr11 85292683 85292837 -63490635 + L1ME3A LINE L1 5773 5926 -244 22 0 0 0 chr11 85292840 85292862 -63490610 + AT_rich Low_complexity Low_complexity 1 22 0 378 388 12 0 chr11 85293412 85293572 -63489900 - L3 LINE CR1 -23 1554 1393 250 259 46 3 chr11 85293606 85293687 -63489785 + MIR SINE MIR 47 140 -68 192 314 97 57 chr11 85293762 85293886 -63489586 - L3 LINE CR1 -286 1291 1163 1984 110 29 0 chr11 85293940 85294213 -63489259 + AluSc SINE Alu 1 281 -28 342 0 0 0 chr11 85294227 85294265 -63489207 + (CAT)n Simple_repeat Simple_repeat 2 39 0 2242 105 0 10 chr11 85294302 85294616 -63488856 - AluY SINE Alu 0 311 1 417 261 75 37 chr11 85294817 85295005 -63488467 + MIR SINE MIR 68 262 0 214 255 21 0 chr11 85295839 85295933 -63487539 + (TA)n Simple_repeat Simple_repeat 1 96 0 289 265 163 30 chr11 85295933 85296099 -63487373 - MIR SINE MIR -56 206 19 2408 143 36 17 chr11 85296626 85297046 -63486426 + MSTC LTR MaLR 1 428 0 689 242 70 48 chr11 85297751 85297937 -63485535 - MER20 DNA MER1_type -14 205 16 212 276 131 35 chr11 85298016 85298161 -63485311 - MIR SINE MIR -6 256 98 462 295 32 13 chr11 85298906 85299062 -63484410 + MIR SINE MIR 94 252 -10 330 243 0 0 chr11 85299823 85299893 -63483579 - L2 LINE L2 0 3272 3203 2312 80 3 0 chr11 85299933 85300220 -63483252 + AluSg SINE Alu 4 291 -19 2218 110 13 0 chr11 85300377 85300686 -63482786 - AluSq SINE Alu 0 313 1 186 360 11 0 chr11 85301734 85301823 -63481649 - MIR SINE MIR -120 142 53 330 348 19 19 chr11 85302827 85302982 -63480490 + MIR SINE MIR 98 252 -10 457 298 141 10 chr11 85303566 85303764 -63479708 - MIR SINE MIR -19 243 20 24 0 0 0 chr11 85304081 85304105 -63479367 + AT_rich Low_complexity Low_complexity 1 24 0 1971 179 90 37 chr11 85306600 85307065 -63476407 - LTR2B LTR ERV1 0 490 1 737 222 142 0 chr11 85307081 85307306 -63476166 - MIR SINE MIR -2 260 4 497 331 55 35 chr11 85307585 85307839 -63475633 + MIR SINE MIR 2 260 -2 2211 92 3 0 chr11 85307907 85308191 -63475281 + AluSp SINE Alu 21 305 -8 325 307 127 25 chr11 85308788 85308942 -63474530 + L2 LINE L2 2678 2868 -446 1998 152 0 13 chr11 85308942 85309258 -63474214 - AluSx SINE Alu 0 312 1 325 307 127 25 chr11 85309258 85309347 -63474125 + L2 LINE L2 2868 2946 -368 206 324 28 14 chr11 85309691 85309762 -63473710 - MIR SINE MIR -157 105 34 25 0 0 0 chr11 85310416 85310441 -63473031 + AT_rich Low_complexity Low_complexity 1 25 0 180 0 0 0 chr11 85310576 85310596 -63472876 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1697 138 29 0 chr11 85310613 85310859 -63472613 - AluSx SINE Alu -58 254 2 208 0 0 59 chr11 85312081 85312115 -63471357 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 350 193 0 0 chr11 85312245 85312302 -63471170 + MER1B DNA MER1_type 46 102 -235 237 382 99 32 chr11 85312759 85313043 -63470429 - L2 LINE L2 -1 3271 2959 1977 117 31 3 chr11 85313043 85313333 -63470139 + AluSc SINE Alu 1 298 -11 237 382 99 32 chr11 85313333 85313391 -63470081 - L2 LINE L2 -313 2959 2906 451 256 50 50 chr11 85313515 85313695 -63469777 + MER5B DNA MER1_type 9 177 -1 201 380 13 0 chr11 85313836 85313915 -63469557 - MIR SINE MIR -113 95 16 242 373 53 27 chr11 85314110 85314260 -63469212 + L2 LINE L2 3119 3272 0 1524 216 27 40 chr11 85315079 85315450 -63468022 - MLT1A2 LTR MaLR 0 374 9 2112 121 14 0 chr11 85315758 85316048 -63467424 + MER1B DNA MER1_type 46 339 0 2257 109 0 0 chr11 85316256 85316550 -63466922 - AluSg1 SINE Alu -10 299 6 212 346 135 21 chr11 85316679 85317063 -63466409 - L2 LINE L2 -438 2876 2449 182 223 136 78 chr11 85317673 85317776 -63465696 + MIR3 SINE MIR 50 158 -50 376 332 70 9 chr11 85318409 85318637 -63464835 + MIR SINE MIR 11 249 -13 1324 256 55 14 chr11 85318790 85319049 -63464423 - MLT1C LTR MaLR -8 459 173 408 88 0 0 chr11 85319049 85319106 -63464366 + (TATG)n Simple_repeat Simple_repeat 4 60 0 1324 256 55 14 chr11 85319106 85319280 -63464192 - MLT1C LTR MaLR -294 173 8 1412 113 226 4 chr11 85320354 85320602 -63462870 - AluSq SINE Alu 0 303 1 228 264 88 0 chr11 85321199 85321290 -63462182 + MIR SINE MIR 94 192 -70 332 341 74 0 chr11 85321341 85321476 -63461996 + MIR SINE MIR 71 215 -47 303 71 0 0 chr11 85322648 85322690 -63460782 + (ATTG)n Simple_repeat Simple_repeat 2 43 0 6553 154 22 13 chr11 85323743 85325944 -63457528 - L1MA4 LINE L1 -1 6299 4082 1512 196 105 41 chr11 85325971 85326311 -63457161 - MLT1D LTR MaLR -59 446 73 186 71 0 0 chr11 85326311 85326339 -63457133 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1512 196 105 41 chr11 85326339 85326417 -63457055 - MLT1D LTR MaLR -432 73 1 205 182 0 0 chr11 85327009 85327042 -63456430 + (CATATA)n Simple_repeat Simple_repeat 4 36 0 2775 228 50 12 chr11 85327045 85327900 -63455572 - L1MB7 LINE L1 -16 6168 5281 2059 140 3 0 chr11 85328042 85328334 -63455138 - AluSx SINE Alu -19 293 1 677 261 163 0 chr11 85329050 85329253 -63454219 + MIR SINE MIR 2 237 -25 550 353 25 20 chr11 85330700 85330944 -63452528 + MIR SINE MIR 3 247 -15 2175 210 74 6 chr11 85331210 85331682 -63451790 + MLT1D LTR MaLR 1 504 -1 455 331 98 50 chr11 85332420 85332819 -63450653 + L2 LINE L2 2889 3306 -7 398 342 47 26 chr11 85332882 85333072 -63450400 + MIR SINE MIR 69 262 0 1472 203 108 8 chr11 85333355 85333715 -63449757 - MSTD LTR MaLR 0 396 1 21 0 0 0 chr11 85334054 85334075 -63449397 + AT_rich Low_complexity Low_complexity 1 21 0 213 328 18 148 chr11 85334229 85334629 -63448843 + L3 LINE CR1 1001 1348 -229 314 372 33 0 chr11 85335058 85335179 -63448293 + L2 LINE L2 3137 3261 -11 396 294 122 25 chr11 85335335 85335544 -63447928 - MIR SINE MIR 0 262 27 305 229 90 3 chr11 85335575 85335700 -63447772 - L1MD3 LINE L1 -2 8040 7883 197 132 26 0 chr11 85335705 85335743 -63447729 + CT-rich Low_complexity Low_complexity 2 40 0 227 254 18 0 chr11 85335759 85335814 -63447658 + (TA)n Simple_repeat Simple_repeat 1 56 0 219 327 132 41 chr11 85335858 85336078 -63447394 + L2 LINE L2 2736 2975 -339 969 87 0 2 chr11 85336199 85336219 -63447253 + L1P3 LINE L1 5459 5478 -694 4261 56 4 0 chr11 85336219 85336752 -63446720 - L1PA8 LINE L1 -3 6169 5635 969 87 0 2 chr11 85336752 85336873 -63446599 + L1P3 LINE L1 5478 5598 -574 285 75 0 0 chr11 85336875 85336915 -63446557 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 2045 115 66 0 chr11 85336922 85337208 -63446264 + AluSc SINE Alu 1 305 -4 454 248 18 9 chr11 85337225 85337334 -63446138 + L2 LINE L2 3199 3308 -5 33 66 0 0 chr11 85337844 85337905 -63445567 + AT_rich Low_complexity Low_complexity 1 61 0 185 296 125 0 chr11 85338177 85338265 -63445207 + MIR SINE MIR 46 144 -64 23 0 0 0 chr11 85338424 85338447 -63445025 + AT_rich Low_complexity Low_complexity 1 23 0 209 321 185 26 chr11 85338531 85338839 -63444633 + L2 LINE L2 2322 2678 -636 3890 204 67 10 chr11 85339277 85340022 -63443450 + MER21B LTR ERV1 2 798 -65 183 42 0 0 chr11 85340022 85340046 -63443426 + (CA)n Simple_repeat Simple_repeat 2 25 0 3890 204 67 10 chr11 85340046 85340109 -63443363 + MER21B LTR ERV1 798 856 -7 519 213 28 9 chr11 85340277 85340385 -63443087 + MLT1J2 LTR MaLR 1 110 -340 647 284 39 20 chr11 85340396 85340600 -63442872 + MLT1J2 LTR MaLR 243 450 0 297 356 56 0 chr11 85340635 85340725 -63442747 + L2 LINE L2 3142 3236 -36 376 282 201 6 chr11 85340893 85341067 -63442405 + MIR SINE MIR 21 228 -34 240 278 24 83 chr11 85342604 85342773 -63440699 + HAL1 LINE L1 2253 2411 -96 31 58 0 0 chr11 85342781 85342833 -63440639 + AT_rich Low_complexity Low_complexity 1 52 0 212 196 0 54 chr11 85344023 85344079 -63439393 - MIR SINE MIR -7 255 203 699 332 28 20 chr11 85344287 85344537 -63438935 + MIR SINE MIR 3 254 -8 379 361 48 22 chr11 85345968 85346195 -63437277 - MIR SINE MIR -26 236 4 219 204 0 0 chr11 85346305 85346349 -63437123 + L2 LINE L2 3263 3306 -7 254 380 28 24 chr11 85346888 85347101 -63436371 - MIR SINE MIR -29 233 20 651 279 24 53 chr11 85348444 85348784 -63434688 - L1ME3A LINE L1 -230 5940 5611 511 276 120 0 chr11 85348894 85349111 -63434361 - L1ME3A LINE L1 -556 5606 5364 2220 104 3 3 chr11 85349790 85350087 -63433385 - AluSc SINE Alu -12 297 1 483 59 15 0 chr11 85350238 85350306 -63433166 + MER41B LTR ERV1 479 547 -88 1847 136 13 28 chr11 85350334 85350651 -63432821 + AluSq SINE Alu 1 312 -1 306 254 0 0 chr11 85350762 85350825 -63432647 - L2 LINE L2 -1 3271 3209 747 215 15 55 chr11 85351029 85351229 -63432243 - MER20 DNA MER1_type -27 192 1 4965 116 35 9 chr11 85351536 85352296 -63431176 - LTR17 LTR ERV1 0 780 1 199 237 0 0 chr11 85352327 85352365 -63431107 + MIR SINE MIR 111 148 -60 1793 111 123 8 chr11 85352367 85352726 -63430746 + LTR7 LTR ERV1 1 450 0 289 245 252 13 chr11 85352789 85352948 -63430524 + L2 LINE L2 3115 3311 -2 213 94 0 0 chr11 85352988 85353020 -63430452 + (TC)n Simple_repeat Simple_repeat 2 33 0 192 172 0 121 chr11 85353154 85353212 -63430260 + L3 LINE CR1 1326 1376 -201 248 236 56 14 chr11 85353247 85353319 -63430153 + MIR SINE MIR 119 193 -69 465 296 53 16 chr11 85353723 85353912 -63429560 + MIR SINE MIR 21 216 -46 1591 197 36 25 chr11 85353955 85354316 -63429156 - MLT1A1 LTR MaLR 0 365 1 1395 242 45 36 chr11 85354996 85355438 -63428034 + MLT1C LTR MaLR 6 451 -16 1406 205 13 89 chr11 85355950 85356345 -63427127 + MLT1A1 LTR MaLR 1 365 0 229 195 0 0 chr11 85356349 85356390 -63427082 + MIR3 SINE MIR 115 155 -53 348 94 0 0 chr11 85356855 85356908 -63426564 + (CA)n Simple_repeat Simple_repeat 2 54 0 388 302 54 40 chr11 85356917 85357139 -63426333 + MIR SINE MIR 26 250 -12 9913 219 10 2 chr11 85357161 85360350 -63423122 + L1PA15 LINE L1 2949 6165 0 2010 149 13 19 chr11 85360941 85361240 -63422232 + THE1B LTR MaLR 1 291 -84 2109 122 0 16 chr11 85361240 85361544 -63421928 - AluSq SINE Alu -10 303 5 2010 149 13 19 chr11 85361544 85361629 -63421843 + THE1B LTR MaLR 291 375 0 267 266 26 71 chr11 85361684 85361797 -63421675 + MIR SINE MIR 145 252 -10 24 0 0 0 chr11 85362834 85362858 -63420614 + AT_rich Low_complexity Low_complexity 1 24 0 203 330 55 28 chr11 85363113 85363222 -63420250 + MIR SINE MIR 30 141 -67 263 202 11 0 chr11 85363457 85363551 -63419921 + (TA)n Simple_repeat Simple_repeat 2 96 0 451 315 19 12 chr11 85364018 85364180 -63419292 - MER117 DNA MER1_type -17 180 18 24 32 0 0 chr11 85364297 85364328 -63419144 + AT_rich Low_complexity Low_complexity 1 31 0 2325 111 3 0 chr11 85366485 85366809 -63416663 - L1P4 LINE L1 -398 5765 5441 1739 91 44 33 chr11 85366805 85367080 -63416392 + L1PA13 LINE L1 5868 6145 -18 * 263 183 17 0 chr11 85367349 85367409 -63416063 + (CA)n Simple_repeat Simple_repeat 2 62 0 374 350 47 23 chr11 85367433 85367647 -63415825 + MIR SINE MIR 25 243 -19 255 336 128 8 chr11 85369422 85369547 -63413925 - MIR3 SINE MIR -9 199 60 950 206 40 6 chr11 85369964 85370239 -63413233 + MER2 DNA MER2_type 1 344 -1 276 298 75 0 chr11 85371354 85371448 -63412024 + L2 LINE L2 3169 3269 -3 1495 112 40 9 chr11 85371527 85371750 -63411722 - MER30 DNA MER1_type 0 230 1 191 32 65 0 chr11 85372000 85372031 -63411441 + T-rich Low_complexity Low_complexity 2 34 0 2295 65 4 0 chr11 85373214 85373511 -63409961 - AluSc SINE Alu 0 298 1 380 309 66 33 chr11 85373524 85373705 -63409767 - MIR SINE MIR 0 262 76 193 362 0 0 chr11 85373766 85373824 -63409648 - L3 LINE CR1 -90 1487 1430 2282 55 0 4 chr11 85373998 85374300 -63409172 + AluY SINE Alu 8 308 0 249 294 33 33 chr11 85374480 85374572 -63408900 - L3 LINE CR1 -10 1567 1476 250 86 0 0 chr11 85374582 85374617 -63408855 + MADE1 DNA Mariner 46 80 0 1452 255 51 7 chr11 85375715 85376127 -63407345 + MER57B LTR ERV1 1 430 -4 864 248 51 100 chr11 85376162 85376610 -63406862 - MLT1J1 LTR MaLR 0 446 21 354 45 0 0 chr11 85376724 85376768 -63406704 + (TG)n Simple_repeat Simple_repeat 2 45 0 240 296 167 30 chr11 85376819 85376951 -63406521 + MIR SINE MIR 4 153 -109 1664 254 42 23 chr11 85377127 85377654 -63405818 - L1ME1 LINE L1 -5 6161 5625 265 272 71 71 chr11 85377901 85378122 -63405350 - MIR SINE MIR -14 248 30 278 258 190 37 chr11 85379125 85379288 -63404184 + MIR SINE MIR 3 190 -72 254 288 127 68 chr11 85379986 85380104 -63403368 - L2 LINE L2 -5 3267 3143 274 238 25 49 chr11 85380468 85380590 -63402882 + GA-rich Low_complexity Low_complexity 3 121 0 204 250 0 0 chr11 85380797 85380845 -63402627 + A-rich Low_complexity Low_complexity 2 49 0 465 351 67 4 chr11 85381204 85381443 -63402029 + MIR SINE MIR 3 256 -6 553 225 162 18 chr11 85381782 85381982 -63401490 - MLT1E2 LTR MaLR -289 365 122 22 0 0 0 chr11 85382265 85382287 -63401185 + AT_rich Low_complexity Low_complexity 1 22 0 382 266 11 0 chr11 85382446 85382540 -63400932 + MER5A DNA MER1_type 12 106 -83 309 332 42 76 chr11 85382675 85382787 -63400685 - MIR SINE MIR -10 252 138 2238 120 0 0 chr11 85382787 85383086 -63400386 - AluSx SINE Alu -13 299 1 309 332 42 76 chr11 85383086 85383211 -63400261 - MIR SINE MIR -124 138 23 254 328 229 35 chr11 85383324 85383525 -63399947 + MIR SINE MIR 15 254 -8 205 224 0 20 chr11 85383826 85383875 -63399597 + L2 LINE L2 3229 3276 -37 273 283 138 40 chr11 85384638 85384790 -63398682 + MIR SINE MIR 50 216 -46 500 335 81 23 chr11 85385182 85385403 -63398069 - MIR SINE MIR -4 258 25 315 308 67 8 chr11 85386864 85386984 -63396488 + MIR SINE MIR 48 174 -88 1888 168 32 3 chr11 85387369 85387685 -63395787 - MER7A DNA MER2_type -23 323 1 1356 273 109 56 chr11 85388197 85389121 -63394351 + L1MC4 LINE L1 7070 8042 0 231 355 87 29 chr11 85390374 85390450 -63393022 - L2 LINE L2 -11 3261 3191 2574 150 5 30 chr11 85390450 85390889 -63392583 + MSTA LTR MaLR 1 428 0 231 355 87 29 chr11 85390889 85390950 -63392522 - L2 LINE L2 -81 3191 3116 1482 177 57 16 chr11 85391334 85391650 -63391822 + MLT1B LTR MaLR 60 388 -2 22 0 0 0 chr11 85391910 85391932 -63391540 + AT_rich Low_complexity Low_complexity 1 22 0 2959 174 27 12 chr11 85392821 85393409 -63390063 - L1MC3 LINE L1 0 7785 7189 266 308 11 11 chr11 85393409 85393500 -63389972 - MLT1E2 LTR MaLR -442 125 35 235 293 93 0 chr11 85393716 85393791 -63389681 + L2 LINE L2 2698 2779 -535 213 392 29 29 chr11 85394534 85394705 -63388767 - MIR3 SINE MIR -15 193 23 29 0 0 0 chr11 85394916 85394945 -63388527 + AT_rich Low_complexity Low_complexity 1 29 0 967 227 124 65 chr11 85395201 85395595 -63387877 + MER39 LTR ERV1 1 611 -96 2202 124 33 33 chr11 85395595 85395959 -63387513 - THE1B LTR MaLR 0 364 1 967 227 124 65 chr11 85395959 85396063 -63387409 + MER39 LTR ERV1 611 707 0 374 267 40 20 chr11 85396923 85397024 -63386448 - L2 LINE L2 -16 3256 3154 197 321 12 37 chr11 85397745 85397826 -63385646 - L2 LINE L2 -2 3270 3192 411 283 60 12 chr11 85397902 85398068 -63385404 - L2 LINE L2 -179 3093 2920 405 324 0 0 chr11 85398360 85398465 -63385007 + L2 LINE L2 3168 3272 0 256 278 91 53 chr11 85398501 85398688 -63384784 + MIR SINE MIR 63 256 -6 400 264 0 18 chr11 85401012 85401122 -63382350 + MIR SINE MIR 77 184 -78 213 254 127 0 chr11 85401974 85402045 -63381427 + MIR SINE MIR 92 171 -91 2271 133 28 0 chr11 85402684 85403038 -63380434 - THE1B LTR MaLR 0 364 1 375 354 28 26 chr11 85403394 85403580 -63379892 + MIR SINE MIR 5 189 -60 2187 128 0 0 chr11 85404478 85404776 -63378696 - AluSg SINE Alu -12 298 1 2055 165 96 19 chr11 85404802 85404993 -63378479 - L1MB8 LINE L1 -1 6177 5987 787 252 127 9 chr11 85404993 85405315 -63378157 - L1MC3 LINE L1 -1806 5979 5620 348 275 0 84 chr11 85405840 85405982 -63377490 - MER5A DNA MER1_type -6 183 54 318 26 0 0 chr11 85407043 85407082 -63376390 + (TAGA)n Simple_repeat Simple_repeat 2 40 0 197 317 58 33 chr11 85408107 85408227 -63375245 + L2 LINE L2 3191 3313 0 516 273 38 49 chr11 85408599 85408866 -63374606 - L1MEd LINE L1 -4888 1231 968 23 0 0 0 chr11 85409098 85409121 -63374351 + AT_rich Low_complexity Low_complexity 1 23 0 3304 226 5 0 chr11 85409200 85409934 -63373538 - L1PA15 LINE L1 -876 5270 4533 5213 128 56 9 chr11 85409937 85410796 -63372676 + L1PA15 LINE L1 5264 6162 -3 2458 123 8 5 chr11 85410955 85411328 -63372144 + THE1C LTR MaLR 1 374 -1 631 322 218 30 chr11 85411416 85411783 -63371689 + L2 LINE L2 2001 2298 -974 1504 196 105 6 chr11 85411783 85412115 -63371357 + MLT1A1 LTR MaLR 1 365 0 631 322 218 30 chr11 85412115 85412666 -63370806 + L2 LINE L2 2298 3084 -188 3808 183 51 10 chr11 85414007 85414580 -63368892 + L1MA8 LINE L1 5057 5605 -686 1853 152 48 34 chr11 85414580 85414935 -63368537 + THE1B LTR MaLR 5 364 0 11260 110 5 0 chr11 85414935 85416507 -63366965 + THE1B-int LTR MaLR 1 1580 0 1843 156 21 46 chr11 85416507 85416880 -63366592 + THE1B LTR MaLR 1 364 0 3808 183 51 10 chr11 85416880 85417266 -63366206 + L1MA8 LINE L1 5604 6053 -238 528 151 46 1 chr11 85417267 85417389 -63366083 + L1MA7 LINE L1 6161 6291 0 209 297 31 0 chr11 85417469 85417533 -63365939 - L3 LINE CR1 -105 1472 1407 309 294 18 28 chr11 85417604 85417713 -63365759 - MIR SINE MIR -4 258 151 493 318 77 63 chr11 85417736 85418230 -63365242 + MLT1H LTR MaLR 43 543 -6 387 316 38 19 chr11 85418236 85418394 -63365078 - MIR SINE MIR -100 162 2 489 345 42 39 chr11 85418422 85418643 -63364829 - L3 LINE CR1 -311 1266 1042 1285 270 3 12 chr11 85418643 85418984 -63364488 + MER58B DNA MER1_type 4 341 0 489 345 42 39 chr11 85418984 85419092 -63364380 - L3 LINE CR1 -535 1042 936 321 329 84 36 chr11 85419149 85419374 -63364098 - L3 LINE CR1 -789 788 553 320 311 25 16 chr11 85419432 85419554 -63363918 - L2 LINE L2 -1 3312 3190 241 415 63 0 chr11 85419660 85419780 -63363692 - L3 LINE CR1 -1155 422 294 309 265 205 8 chr11 85419780 85419897 -63363575 - MER5A DNA MER1_type -2 187 48 269 304 80 14 chr11 85420053 85420191 -63363281 + MIR SINE MIR 7 153 -109 191 345 48 0 chr11 85420232 85420316 -63363156 - L2 LINE L2 -545 2769 2682 309 286 13 0 chr11 85420392 85420469 -63363003 - L2 LINE L2 -10 3262 3185 272 300 104 45 chr11 85420632 85420852 -63362620 - L2 LINE L2 -806 2508 2276 342 347 12 29 chr11 85421475 85421645 -63361827 - MIR SINE MIR -10 252 86 331 319 140 31 chr11 85421648 85422139 -63361333 + MLT1K LTR MaLR 14 585 -3 267 350 33 8 chr11 85422194 85422314 -63361158 - MIR SINE MIR -55 153 31 240 304 14 29 chr11 85422680 85422749 -63360723 + L2 LINE L2 3204 3271 -1 631 144 83 55 chr11 85422840 85423021 -63360451 - MER33 DNA MER1_type 0 324 139 371 183 122 0 chr11 85423019 85423101 -63360371 - MER33 DNA MER1_type -232 92 1 * 320 318 32 39 chr11 85424696 85424850 -63358622 + MIR SINE MIR 64 216 -46 198 0 0 0 chr11 85425958 85425980 -63357492 + (A)n Simple_repeat Simple_repeat 1 22 0 210 370 84 0 chr11 85426160 85426279 -63357193 + MIR SINE MIR 49 177 -85 24 0 0 0 chr11 85427051 85427075 -63356397 + AT_rich Low_complexity Low_complexity 1 24 0 245 304 24 40 chr11 85427081 85427206 -63356266 + (ATGGTG)n Simple_repeat Simple_repeat 2 124 0 * 265 316 0 0 chr11 85427143 85427222 -63356250 + (TGG)n Simple_repeat Simple_repeat 2 80 0 688 233 19 13 chr11 85427268 85427427 -63356045 + MER63A DNA MER1_type 50 209 -1 246 318 15 0 chr11 85427450 85427516 -63355956 + (TGG)n Simple_repeat Simple_repeat 3 69 0 394 191 26 33 chr11 85427531 85427683 -63355789 + (ATGGTG)n Simple_repeat Simple_repeat 3 153 0 1230 240 88 78 chr11 85428370 85428870 -63354602 + MLT1D LTR MaLR 1 505 0 2362 62 0 52 chr11 85429177 85429501 -63353971 + AluY SINE Alu 1 307 -4 2045 134 115 16 chr11 85429616 85429990 -63353482 + LTR57 LTR ERVL 1 411 0 1683 221 19 21 chr11 85430050 85430425 -63353047 - MLT1A2 LTR MaLR 0 374 1 467 328 66 25 chr11 85430484 85430728 -63352744 + MIR SINE MIR 8 261 -1 1826 223 179 0 chr11 85431111 85431592 -63351880 - MLT1F1 LTR MaLR 0 567 1 25 0 0 0 chr11 85431706 85431731 -63351741 + AT_rich Low_complexity Low_complexity 1 25 0 7313 38 8 0 chr11 85431731 85433239 -63350233 - L1PA4 LINE L1 0 6155 4642 235 293 93 0 chr11 85434126 85434201 -63349271 - L2 LINE L2 -535 2779 2698 266 308 11 11 chr11 85434416 85434507 -63348965 + MLT1F1 LTR MaLR 35 125 -442 2959 174 27 12 chr11 85434507 85435095 -63348377 + L1MC3 LINE L1 7189 7785 0 22 0 0 0 chr11 85435984 85436006 -63347466 + AT_rich Low_complexity Low_complexity 1 22 0 1482 177 57 16 chr11 85436266 85436582 -63346890 - MLT1B LTR MaLR -2 388 60 231 355 87 29 chr11 85436966 85437027 -63346445 + L2 LINE L2 3116 3172 -100 2574 150 5 30 chr11 85437027 85437466 -63346006 - MSTA LTR MaLR 0 428 1 231 355 87 29 chr11 85437466 85437542 -63345930 + L2 LINE L2 3172 3261 -11 39 68 0 0 chr11 85437970 85438044 -63345428 + AT_rich Low_complexity Low_complexity 1 74 0 233 288 48 40 chr11 85438776 85438901 -63344571 + L2 LINE L2 2934 3059 -213 1464 247 43 32 chr11 85438964 85439115 -63344357 + MLT1C LTR MaLR 1 149 -318 2256 112 3 0 chr11 85439115 85439409 -63344063 - AluSq SINE Alu -15 298 4 1464 247 43 32 chr11 85439409 85439719 -63343753 + MLT1C LTR MaLR 149 467 0 241 236 18 0 chr11 85439740 85439795 -63343677 - L2 LINE L2 0 3313 3258 204 259 148 30 chr11 85439791 85439926 -63343546 + L2 LINE L2 3161 3311 -2 * 539 311 92 17 chr11 85440255 85440493 -63342979 + MIR SINE MIR 1 256 -6 915 230 148 39 chr11 85440574 85440931 -63342541 - MSTD LTR MaLR 0 396 1 11357 29 4 0 chr11 85441886 85443252 -63340220 - L1P LINE L1 -890 5256 3886 10467 42 1 0 chr11 85443252 85444565 -63338907 + L1P LINE L1 2574 3887 -2259 1241 191 59 28 chr11 85444915 85445307 -63338165 - MLT2B1 LTR ERVL 0 414 1 2809 199 18 65 chr11 85447180 85447847 -63335625 - MER82 DNA MER2_type -4 649 14 21 36 0 0 chr11 85448146 85448174 -63335298 + AT_rich Low_complexity Low_complexity 1 28 0 28402 130 16 16 chr11 85448174 85454592 -63328880 + L1PA8 LINE L1 7 6473 -14 306 195 23 23 chr11 85454757 85454844 -63328628 + L1MC5 LINE L1 7827 7913 -48 1958 72 108 14 chr11 85455048 85455325 -63328147 - AluY SINE Alu -8 303 1 821 175 7 7 chr11 85455390 85455544 -63327928 + MLT2B1 LTR ERVL 3 156 -364 375 286 87 49 chr11 85457191 85457257 -63326215 + L1MC/D LINE L1 5321 5383 -2425 1171 200 74 39 chr11 85457257 85457542 -63325930 + AluJo SINE Alu 1 295 -7 375 286 87 49 chr11 85457542 85457741 -63325731 + L1MC/D LINE L1 5383 5596 -2212 412 228 73 16 chr11 85457833 85457956 -63325516 - MIR SINE MIR -25 237 108 287 192 14 0 chr11 85458091 85458164 -63325308 + (TA)n Simple_repeat Simple_repeat 1 74 0 1956 257 90 6 chr11 85458284 85458919 -63324553 - MER63C DNA MER1_type 0 930 243 23 78 0 0 chr11 85459019 85459070 -63324402 + AT_rich Low_complexity Low_complexity 1 51 0 37 69 0 0 chr11 85459265 85459337 -63324135 + AT_rich Low_complexity Low_complexity 1 72 0 233 288 48 40 chr11 85460069 85460194 -63323278 + L2 LINE L2 2934 3059 -213 1504 246 41 32 chr11 85460257 85460409 -63323063 + MLT1C LTR MaLR 1 150 -317 2256 112 3 0 chr11 85460409 85460703 -63322769 - AluSq SINE Alu -15 298 4 1504 246 41 32 chr11 85460703 85461013 -63322459 + MLT1C LTR MaLR 150 467 0 241 236 18 0 chr11 85461034 85461089 -63322383 - L2 LINE L2 0 3313 3258 204 259 148 30 chr11 85461085 85461220 -63322252 + L2 LINE L2 3161 3311 -2 * 539 311 92 17 chr11 85461549 85461787 -63321685 + MIR SINE MIR 1 256 -6 1066 225 136 36 chr11 85461868 85462228 -63321244 - MSTD LTR MaLR 0 396 1 243 271 48 30 chr11 85463164 85463330 -63320142 - L1MEc LINE L1 -4923 1387 1219 428 255 14 42 chr11 85463409 85463621 -63319851 - L1MEc LINE L1 -4951 1168 963 245 323 85 32 chr11 85463651 85463899 -63319573 - L1MEc LINE L1 -5359 760 500 209 347 50 16 chr11 85464159 85464280 -63319192 + MIR SINE MIR 17 141 -121 356 306 67 88 chr11 85464316 85464692 -63318780 - MLT1K LTR MaLR -17 571 204 209 216 21 62 chr11 85464878 85464926 -63318546 + (TAG)n Simple_repeat Simple_repeat 1 45 -48 1799 167 49 12 chr11 85464926 85465255 -63318217 + MER2 DNA MER2_type 4 344 0 209 216 21 62 chr11 85465255 85465303 -63318169 + (TAG)n Simple_repeat Simple_repeat 45 93 0 192 40 0 0 chr11 85465498 85465523 -63317949 + (TG)n Simple_repeat Simple_repeat 2 26 0 270 323 57 82 chr11 85467023 85467302 -63316170 + L2 LINE L2 2461 2732 -582 238 231 11 55 chr11 85467341 85467432 -63316040 + MER34B LTR ERV1 31 117 -448 24 0 0 0 chr11 85468392 85468416 -63315056 + AT_rich Low_complexity Low_complexity 1 24 0 353 267 91 40 chr11 85468891 85469067 -63314405 - MIR3 SINE MIR -13 195 11 279 0 0 0 chr11 85469137 85469168 -63314304 + (TA)n Simple_repeat Simple_repeat 2 32 0 * 297 0 0 0 chr11 85469167 85469200 -63314272 + (GA)n Simple_repeat Simple_repeat 2 34 0 41 58 0 0 chr11 85469237 85469306 -63314166 + AT_rich Low_complexity Low_complexity 1 69 0 3094 148 100 0 chr11 85469554 85469880 -63313592 - MER7C DNA MER2_type -2426 602 310 203 61 30 0 chr11 85469880 85469913 -63313559 + (TGAG)n Simple_repeat Simple_repeat 1 34 0 3094 148 100 0 chr11 85469913 85470125 -63313347 - MER7C DNA MER2_type -2718 310 10 375 175 0 0 chr11 85470602 85470665 -63312807 + MER58 DNA MER1_type 2358 2420 0 280 331 71 8 chr11 85472488 85472615 -63310857 + MIR SINE MIR 11 145 -117 602 249 61 10 chr11 85473525 85473881 -63309591 - Charlie4a DNA MER1_type 0 508 94 297 243 14 0 chr11 85474104 85474174 -63309298 - MIR SINE MIR -3 259 189 361 310 124 9 chr11 85474905 85475131 -63308341 + L1 LINE L1 3789 4040 -2106 235 338 34 27 chr11 85475293 85475621 -63307851 + L1 LINE L1 4256 4585 -1561 23 0 0 0 chr11 85475678 85475701 -63307771 + AT_rich Low_complexity Low_complexity 1 23 0 2421 147 40 36 chr11 85476124 85476267 -63307205 + MER6 DNA MER2_type 388 529 -336 2126 130 0 0 chr11 85476267 85476560 -63306912 + AluSx SINE Alu 1 293 -19 2421 147 40 36 chr11 85476560 85476885 -63306587 + MER6 DNA MER2_type 529 858 -7 287 299 129 21 chr11 85477297 85477491 -63305981 - MIR SINE MIR -25 237 23 2052 139 10 3 chr11 85477764 85478104 -63305368 - AluSq SINE Alu 0 342 1 353 231 65 46 chr11 85478220 85478328 -63305144 - MIR SINE MIR -122 140 31 422 273 48 42 chr11 85479269 85479434 -63304038 - MIR SINE MIR -53 209 44 277 261 239 23 chr11 85479541 85479671 -63303801 - MIR SINE MIR -14 248 91 305 286 66 28 chr11 85479691 85479808 -63303664 - MIR SINE MIR -82 126 7 436 297 45 38 chr11 85479820 85480049 -63303423 + MER20B DNA MER1_type 1 218 -1 385 241 101 35 chr11 85480900 85481079 -63302393 - MIR SINE MIR -66 142 5 249 293 0 30 chr11 85481226 85481325 -63302147 - MIR SINE MIR -122 140 45 216 0 0 0 chr11 85482600 85482624 -63300848 + (T)n Simple_repeat Simple_repeat 1 24 0 504 217 58 17 chr11 85483163 85483283 -63300189 - MIR SINE MIR -81 181 57 918 184 73 44 chr11 85483453 85483768 -63299704 + MER33 DNA MER1_type 1 324 0 428 300 47 13 chr11 85484006 85484156 -63299316 + MIR SINE MIR 97 251 -11 389 338 30 0 chr11 85484920 85485053 -63298419 - L2 LINE L2 0 3272 3136 1084 251 4 21 chr11 85485140 85485419 -63298053 + AluJo SINE Alu 1 274 -38 976 176 12 6 chr11 85486069 85486239 -63297233 - FAM SINE Alu 0 175 5 2013 107 7 4 chr11 85486797 85487100 -63296372 - AluSx SINE Alu 0 304 1 271 332 10 111 chr11 85487227 85487426 -63296046 + L2 LINE L2 2980 3158 -114 633 216 22 22 chr11 85487437 85487618 -63295854 - MER69 DNA AcHobo 0 2526 2346 22 70 0 0 chr11 85487884 85487927 -63295545 + AT_rich Low_complexity Low_complexity 1 43 0 422 286 43 54 chr11 85487932 85488047 -63295425 - MER69 DNA AcHobo -757 469 355 1934 179 65 7 chr11 85488047 85488450 -63295022 + MSTB LTR MaLR 1 426 0 422 286 43 54 chr11 85488450 85488519 -63294953 - MER69 DNA AcHobo -871 355 287 183 80 0 0 chr11 85488548 85488573 -63294899 + (TATG)n Simple_repeat Simple_repeat 2 26 0 745 333 32 21 chr11 85488575 85488854 -63294618 - MER69 DNA AcHobo -2241 285 4 211 258 15 30 chr11 85488888 85488954 -63294518 + L2 LINE L2 3245 3309 -4 1072 283 46 22 chr11 85489308 85489718 -63293754 + L1ME1 LINE L1 5742 6161 -5 399 310 80 56 chr11 85491173 85491386 -63292086 + MIR SINE MIR 33 250 -12 370 309 52 22 chr11 85492791 85492927 -63290545 - MIR SINE MIR -76 186 47 194 114 57 0 chr11 85493102 85493137 -63290335 - L2 LINE L2 -6 3266 3230 231 277 0 31 chr11 85493191 85493256 -63290216 - MLT1K LTR MaLR -8 580 518 1588 209 92 9 chr11 85493409 85493758 -63289714 - MSTD LTR MaLR -16 380 3 513 319 35 6 chr11 85493759 85493928 -63289544 - MIR SINE MIR -28 234 61 851 185 57 62 chr11 85493992 85494203 -63289269 - MLT1A1 LTR MaLR -3 362 153 2183 71 0 14 chr11 85494209 85494613 -63288859 - AluY SINE Alu 0 403 4 26 0 0 0 chr11 85494622 85494648 -63288824 + AT_rich Low_complexity Low_complexity 1 26 0 789 212 0 0 chr11 85494654 85494800 -63288672 - FAM SINE Alu -16 169 24 481 175 175 9 chr11 85494826 85494940 -63288532 - MLT1A1 LTR MaLR -206 159 27 362 377 22 14 chr11 85495481 85495619 -63287853 + L2 LINE L2 3134 3272 0 312 27 0 0 chr11 85496073 85496110 -63287362 + (TA)n Simple_repeat Simple_repeat 2 38 0 1097 52 0 7 chr11 85496111 85496246 -63287226 - AluSp/q SINE Alu -18 295 162 292 250 210 0 chr11 85496931 85497055 -63286417 + MIR SINE MIR 100 249 -13 214 354 10 40 chr11 85497125 85497224 -63286248 - MIR SINE MIR -118 144 49 192 275 210 0 chr11 85498257 85498395 -63285077 - MIR3 SINE MIR -3 205 39 434 305 143 22 chr11 85499524 85499644 -63283828 + L1ME LINE L1 5292 5396 -2412 192 97 0 0 chr11 85499644 85499675 -63283797 + (TTAAA)n Simple_repeat Simple_repeat 3 33 0 434 305 143 22 chr11 85499675 85499826 -63283646 + L1ME LINE L1 5396 5596 -2212 265 208 0 0 chr11 85499900 85499953 -63283519 + L1ME LINE L1 5744 5796 -366 265 244 12 47 chr11 85500371 85500457 -63283015 + (TAGA)n Simple_repeat Simple_repeat 2 84 0 342 266 44 79 chr11 85500615 85500867 -63282605 - MER112 DNA MER1_type 0 260 18 199 366 11 43 chr11 85501269 85501362 -63282110 - L2 LINE L2 -27 3286 3197 351 236 96 79 chr11 85501473 85501651 -63281821 + MIR SINE MIR 20 200 -62 707 237 40 11 chr11 85503705 85503882 -63279590 - MER5A DNA MER1_type 0 189 8 248 295 13 0 chr11 85504397 85504475 -63278997 + MER116 DNA Mariner 1 79 -1 305 212 94 47 chr11 85504562 85504647 -63278825 + L2 LINE L2 3225 3313 0 1666 188 36 14 chr11 85506013 85506370 -63277102 - MLT1A1 LTR MaLR 0 365 1 399 313 40 40 chr11 85508218 85508394 -63275078 - MIR SINE MIR -37 225 50 1840 156 36 3 chr11 85508542 85508844 -63274628 - AluJb SINE Alu 0 312 1 400 290 33 93 chr11 85509751 85509934 -63273538 - MIR3 SINE MIR -7 201 30 2190 95 10 3 chr11 85510662 85510967 -63272505 - AluSc SINE Alu 0 309 3 238 287 90 8 chr11 85511944 85512066 -63271406 - MIR SINE MIR -38 224 93 * 282 306 37 28 chr11 85512062 85512170 -63271302 - L2 LINE L2 0 3313 3205 311 293 13 0 chr11 85512202 85512277 -63271195 - MER5A DNA MER1_type -101 88 13 506 307 82 61 chr11 85512281 85512623 -63270849 - L2 LINE L2 -416 2898 2550 606 268 146 0 chr11 85512716 85512880 -63270592 + MER5A DNA MER1_type 1 188 -1 1565 281 52 15 chr11 85513427 85513965 -63269507 - Tigger8 DNA MER2_type -63 603 46 1754 196 43 14 chr11 85513965 85514312 -63269160 + MER6 DNA MER2_type 3 359 -506 2274 90 0 19 chr11 85514566 85514876 -63268596 - AluSx SINE Alu -8 304 1 189 376 43 21 chr11 85515510 85515603 -63267869 - L2 LINE L2 -40 3232 3138 325 234 13 0 chr11 85515704 85515781 -63267691 - MIR SINE MIR -2 260 183 5795 133 7 1 chr11 85515887 85516790 -63266682 + L1PA15 LINE L1 5256 6163 -2 210 422 69 0 chr11 85517382 85517498 -63265974 + L2 LINE L2 3143 3266 -6 320 310 26 0 chr11 85518121 85518237 -63265235 - MER20B DNA MER1_type -206 577 459 476 285 23 15 chr11 85518546 85518676 -63264796 - L2 LINE L2 -2 3270 3140 314 339 79 18 chr11 85519132 85519297 -63264175 - MER5B DNA MER1_type 0 178 4 216 352 70 27 chr11 85519399 85519655 -63263817 + L2 LINE L2 3029 3295 -18 502 213 65 71 chr11 85519660 85519815 -63263657 - MIR SINE MIR 0 262 109 200 242 0 0 chr11 85519887 85519920 -63263552 - MIR SINE MIR -60 148 116 22 0 0 0 chr11 85520329 85520351 -63263121 + AT_rich Low_complexity Low_complexity 1 22 0 338 328 8 16 chr11 85520895 85521023 -63262449 - MIR SINE MIR -6 256 130 1783 185 10 0 chr11 85521154 85521452 -63262020 - AluSx SINE Alu -11 301 1 528 99 0 0 chr11 85521482 85521563 -63261909 + L1MA3 LINE L1 6220 6300 -5 500 273 104 28 chr11 85522339 85522569 -63260903 - MIR SINE MIR 0 262 18 492 333 8 8 chr11 85522577 85522703 -63260769 - L2 LINE L2 0 3272 3147 434 264 9 18 chr11 85523244 85523354 -63260118 + MER21B LTR ERV1 16 124 -739 1676 246 95 40 chr11 85523409 85524031 -63259441 + MER21B LTR ERV1 100 755 -108 396 310 109 11 chr11 85524110 85524284 -63259188 + MIR SINE MIR 45 235 -27 189 259 69 0 chr11 85524514 85524572 -63258900 - MIR SINE MIR -62 146 85 215 322 0 67 chr11 85525335 85525425 -63258047 - MIR SINE MIR -91 171 88 195 378 39 16 chr11 85525427 85525554 -63257918 - L3 LINE CR1 -20 1557 1428 541 288 90 13 chr11 85526712 85526939 -63256533 + MLT1J1 LTR MaLR 59 301 -145 255 31 0 0 chr11 85527404 85527436 -63256036 + (CAA)n Simple_repeat Simple_repeat 1 32 0 185 143 48 0 chr11 85527490 85527532 -63255940 + CT-rich Low_complexity Low_complexity 3 46 0 269 310 71 30 chr11 85527569 85527766 -63255706 - MIR SINE MIR 0 262 58 21 0 0 0 chr11 85528668 85528689 -63254783 + AT_rich Low_complexity Low_complexity 1 21 0 231 151 58 23 chr11 85528717 85528803 -63254669 + (TTATA)n Simple_repeat Simple_repeat 1 89 0 239 353 0 39 chr11 85528804 85528906 -63254566 - MIR SINE MIR -66 142 45 795 300 25 11 chr11 85529232 85529492 -63253980 + MIR SINE MIR 2 262 0 928 150 5 66 chr11 85529498 85529658 -63253814 - L1MA6 LINE L1 -2 6298 6153 2359 96 0 10 chr11 85529658 85529972 -63253500 - AluSq SINE Alu 0 313 3 928 150 5 66 chr11 85529972 85530024 -63253448 - L1MA6 LINE L1 -147 6153 6099 247 362 21 48 chr11 85530063 85530251 -63253221 + L2 LINE L2 2914 3096 -176 6254 144 29 7 chr11 85530884 85532965 -63250507 + L1PA13 LINE L1 4047 6160 -3 601 243 107 41 chr11 85533011 85533377 -63250095 + HsTC2 DNA Tc2 1505 1894 -4 320 313 31 16 chr11 85533720 85533848 -63249624 - MIR SINE MIR -113 149 20 29 0 0 0 chr11 85533981 85534010 -63249462 + AT_rich Low_complexity Low_complexity 1 29 0 257 304 0 71 chr11 85534587 85534699 -63248773 - MIR SINE MIR -64 144 41 632 269 6 12 chr11 85535508 85535668 -63247804 - MLT1E3 LTR MaLR -115 509 351 294 156 0 0 chr11 85535681 85535745 -63247727 + T-rich Low_complexity Low_complexity 1 64 0 472 209 46 52 chr11 85537852 85538005 -63245467 - L1MEc LINE L1 -4488 1908 1757 3919 206 38 28 chr11 85538107 85539174 -63244298 - L1MB8 LINE L1 -6 6172 5093 532 307 118 62 chr11 85539177 85539864 -63243608 - L2 LINE L2 -27 3286 2553 241 355 11 0 chr11 85540520 85540613 -63242859 - MIR SINE MIR -73 135 42 26 0 0 0 chr11 85540710 85540736 -63242736 + AT_rich Low_complexity Low_complexity 1 26 0 244 339 140 23 chr11 85542652 85542823 -63240649 - L2 LINE L2 -7 3306 3116 804 282 108 79 chr11 85543157 85543253 -63240219 + MLT1D LTR MaLR 109 201 -266 312 27 0 0 chr11 85543253 85543290 -63240182 + (CA)n Simple_repeat Simple_repeat 2 38 0 804 282 108 79 chr11 85543290 85543547 -63239925 + MLT1D LTR MaLR 201 465 -2 244 331 169 0 chr11 85543991 85544115 -63239357 - L3 LINE CR1 -18 1559 1415 760 328 54 43 chr11 85544146 85544591 -63238881 - L2 LINE L2 0 3313 2864 275 345 24 55 chr11 85544638 85544803 -63238669 + MIR3 SINE MIR 1 160 -48 1040 176 0 0 chr11 85544949 85545119 -63238353 + AluJb SINE Alu 136 305 -7 206 352 0 0 chr11 85545234 85545288 -63238184 + L3 LINE CR1 1398 1451 -126 910 169 0 26 chr11 85545417 85545571 -63237901 + AluJb SINE Alu 148 297 -15 293 300 25 0 chr11 85545572 85545692 -63237780 + MER103 DNA DNA 31 153 -13 450 338 143 31 chr11 85546699 85547057 -63236415 - L2 LINE L2 -715 2599 2202 327 354 153 0 chr11 85547136 85547345 -63236127 - MIR SINE MIR 0 262 22 350 272 97 36 chr11 85547368 85547563 -63235909 - L2 LINE L2 -1217 2097 1891 207 0 0 0 chr11 85548638 85548661 -63234811 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 305 143 0 0 chr11 85548690 85548739 -63234733 + MADE1 DNA Mariner 32 80 0 301 304 109 22 chr11 85549082 85549220 -63234252 - L1ME LINE L1 -436 5685 5536 258 330 28 50 chr11 85549714 85549893 -63233579 + L2 LINE L2 2823 2997 -275 1778 153 10 3 chr11 85550007 85550307 -63233165 - AluSx SINE Alu -3 309 8 1381 164 30 9 chr11 85551148 85551379 -63232093 - AluJo SINE Alu -76 236 1 2573 183 51 7 chr11 85551517 85552065 -63231407 + L1MB3 LINE L1 5611 6182 -1 241 314 50 33 chr11 85552143 85552264 -63231208 + MIR SINE MIR 23 145 -117 205 162 0 0 chr11 85554478 85554515 -63228957 + (TG)n Simple_repeat Simple_repeat 2 38 0 201 159 0 0 chr11 85554656 85554700 -63228772 + (TAA)n Simple_repeat Simple_repeat 1 44 0 385 333 33 49 chr11 85554877 85555060 -63228412 - MIR SINE MIR -52 210 31 646 351 30 62 chr11 85556338 85556771 -63226701 + L2 LINE L2 2852 3270 -2 299 344 86 12 chr11 85556769 85556932 -63226540 - MIR SINE MIR 0 262 88 * 688 316 44 33 chr11 85557588 85558018 -63225454 + LTR16B LTR ERVL 28 462 -2 273 212 121 0 chr11 85558193 85558292 -63225180 + L1MC4 LINE L1 7733 7843 -199 452 180 33 49 chr11 85558294 85558416 -63225056 + L1MC4 LINE L1 7922 8041 -1 264 130 0 0 chr11 85558774 85558820 -63224652 + (TTCC)n Simple_repeat Simple_repeat 4 49 0 739 250 56 17 chr11 85558926 85559106 -63224366 + MIR SINE MIR 2 188 -74 198 310 70 0 chr11 85559208 85559308 -63224164 + MIR SINE MIR 156 262 0 318 317 56 37 chr11 85560099 85560289 -63223183 + MIR SINE MIR 30 220 -42 22 35 0 0 chr11 85560405 85560434 -63223038 + AT_rich Low_complexity Low_complexity 1 29 0 239 237 157 16 chr11 85561121 85561215 -63222257 - MIR SINE MIR -75 133 43 220 366 98 49 chr11 85561241 85561405 -63222067 - L2 LINE L2 -2 3270 3099 617 301 65 50 chr11 85561437 85561776 -63221696 + L1M3d LINE L1 173 756 -5547 306 328 11 33 chr11 85561905 85562081 -63221391 + L1M3d LINE L1 669 1087 -5216 1530 231 39 96 chr11 85562467 85563151 -63220321 + L1MB1 LINE L1 825 1546 -4757 1452 170 40 74 chr11 85563151 85563474 -63219998 + AluJb SINE Alu 1 312 0 1530 231 39 96 chr11 85563474 85563569 -63219903 + L1MB1 LINE L1 1546 1645 -4658 3519 206 40 7 chr11 85563569 85564278 -63219194 + MER44D DNA MER2_type 2 605 0 1530 231 39 96 chr11 85564278 85564540 -63218932 + L1MB1 LINE L1 1645 1782 -4521 * 4150 191 24 60 chr11 85564524 85566265 -63217207 + L1MB1 LINE L1 4701 6404 0 782 282 63 76 chr11 85566758 85567652 -63215820 + HAL1 LINE L1 824 1705 -802 229 275 123 29 chr11 85568531 85568669 -63214803 + HAL1 LINE L1 2245 2395 -112 903 120 47 0 chr11 85568879 85569029 -63214443 + L1MA9 LINE L1 6010 6166 -146 183 243 27 0 chr11 85569151 85569188 -63214284 + MIR SINE MIR 211 248 -14 22 35 0 0 chr11 85569299 85569328 -63214144 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr11 85569878 85569900 -63213572 + AT_rich Low_complexity Low_complexity 1 22 0 1302 198 86 38 chr11 85569905 85570244 -63213228 + MLT1D LTR MaLR 1 355 -150 25 31 0 0 chr11 85570437 85570469 -63213003 + AT_rich Low_complexity Low_complexity 1 32 0 293 377 27 0 chr11 85571556 85571702 -63211770 - MIR SINE MIR -16 246 97 28 29 0 0 chr11 85573293 85573328 -63210144 + AT_rich Low_complexity Low_complexity 1 35 0 216 350 47 80 chr11 85573858 85574132 -63209340 + L2 LINE L2 2812 3076 -196 225 188 47 0 chr11 85574289 85574353 -63209119 + (TA)n Simple_repeat Simple_repeat 2 68 0 269 296 156 7 chr11 85575400 85575535 -63207937 - MIR SINE MIR -6 256 102 22 35 0 0 chr11 85575722 85575751 -63207721 + AT_rich Low_complexity Low_complexity 1 29 0 491 360 39 17 chr11 85576199 85576432 -63207040 - MIR SINE MIR 0 262 25 221 258 61 0 chr11 85576431 85576497 -63206975 - MIR SINE MIR -134 128 59 * 1327 229 24 43 chr11 85576550 85576922 -63206550 + MLT1A1 LTR MaLR 1 365 0 4448 56 10 43 chr11 85577321 85577932 -63205540 + LTR10C LTR ERV1 1 591 0 379 365 55 5 chr11 85578116 85578316 -63205156 + MIR SINE MIR 53 262 0 331 332 31 101 chr11 85578989 85579344 -63204128 + L2 LINE L2 2935 3264 -8 337 308 81 20 chr11 85579563 85579761 -63203711 - MIR SINE MIR -6 256 47 298 282 0 0 chr11 85579875 85579946 -63203526 - L2 LINE L2 -16 3256 3186 504 239 85 32 chr11 85580781 85580969 -63202503 - MIR SINE MIR -32 230 33 218 329 0 0 chr11 85581053 85581123 -63202349 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 459 52 0 0 chr11 85581126 85581184 -63202288 + (TG)n Simple_repeat Simple_repeat 2 59 0 3844 262 71 81 chr11 85581194 85583154 -63200318 - L1MC4a LINE L1 -614 7194 5255 733 132 0 23 chr11 85583236 85583365 -63200107 - L1PA16 LINE L1 0 6166 6041 1623 185 24 0 chr11 85583384 85583681 -63199791 - L1PA15 LINE L1 -7 6158 5855 217 237 0 0 chr11 85583687 85583746 -63199726 + (TA)n Simple_repeat Simple_repeat 2 60 0 690 190 0 0 chr11 85584038 85584159 -63199313 - FLAM_C SINE Alu -22 121 1 190 402 41 16 chr11 85584189 85584311 -63199161 - MIR SINE MIR -65 143 19 390 308 200 5 chr11 85584584 85584769 -63198703 + MIR SINE MIR 5 225 -37 817 109 0 14 chr11 85584845 85584992 -63198480 + (CCCTAA)n Simple_repeat Simple_repeat 2 146 0 2005 258 63 33 chr11 85585189 85586082 -63197390 - L1ME3A LINE L1 -115 6055 5127 1336 165 48 23 chr11 85587465 85587774 -63195698 - MER33 DNA MER1_type -4 320 4 3531 218 106 30 chr11 85587853 85588840 -63194632 - L1MC3 LINE L1 -17 7768 6707 348 64 0 0 chr11 85588847 85588894 -63194578 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 1490 165 0 12 chr11 85588896 85589145 -63194327 - AluJb SINE Alu -32 280 35 276 209 146 9 chr11 85589353 85589463 -63194009 + MER113 DNA MER1_type? 297 421 -100 359 258 65 65 chr11 85589610 85589796 -63193676 - MIR SINE MIR -26 236 51 1873 144 34 7 chr11 85590068 85590366 -63193106 + AluSx SINE Alu 3 308 -4 412 344 24 38 chr11 85590576 85590788 -63192684 + MIR SINE MIR 2 210 -52 223 368 34 26 chr11 85591134 85591251 -63192221 + L2 LINE L2 3155 3272 0 2381 101 0 0 chr11 85591311 85591617 -63191855 - AluSg SINE Alu -4 306 1 390 42 0 0 chr11 85592719 85592767 -63190705 + (TG)n Simple_repeat Simple_repeat 1 48 0 2476 203 34 29 chr11 85592864 85593541 -63189931 + Tigger7 DNA MER2_type 1 2581 -6 2065 252 39 22 chr11 85593688 85594363 -63189109 - L1ME1 LINE L1 -79 6087 5402 1905 269 32 13 chr11 85594371 85595050 -63188422 - L1ME1 LINE L1 -765 5381 4690 625 298 55 9 chr11 85596531 85596749 -63186723 + MIR SINE MIR 29 256 -6 711 178 103 17 chr11 85596873 85597047 -63186425 - MER5A DNA MER1_type 0 189 1 4263 212 62 10 chr11 85597107 85598099 -63185373 + L1PB1 LINE L1 6 1048 -5815 14178 201 20 13 chr11 85598621 85602267 -63181205 + L1PB1 LINE L1 1401 5017 -1850 207 0 0 0 chr11 85602267 85602290 -63181182 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 14178 201 20 13 chr11 85602290 85603639 -63179833 + L1PB1 LINE L1 5017 6354 -513 192 40 0 0 chr11 85603639 85603664 -63179808 + (TA)n Simple_repeat Simple_repeat 1 25 0 330 26 0 0 chr11 85603665 85603704 -63179768 + (TG)n Simple_repeat Simple_repeat 2 40 0 14178 201 20 13 chr11 85603704 85603798 -63179674 + L1PB1 LINE L1 6353 6599 -268 181 328 60 0 chr11 85604624 85604691 -63178781 - L2 LINE L2 -1 3271 3201 1750 164 32 45 chr11 85605677 85606055 -63177417 + THE1C LTR MaLR 1 373 -2 649 199 7 0 chr11 85606056 85606197 -63177275 + L1MA9 LINE L1 6171 6312 0 238 330 180 0 chr11 85607886 85607986 -63175486 - MIR SINE MIR -119 143 26 307 232 159 58 chr11 85608058 85608196 -63175276 + L2 LINE L2 3162 3313 0 250 360 92 12 chr11 85608407 85608571 -63174901 - MIR3 SINE MIR -22 186 10 538 285 57 35 chr11 85608867 85609095 -63174377 - MIR SINE MIR -18 244 12 195 388 0 0 chr11 85610116 85610183 -63173289 - L2 LINE L2 -3 3310 3244 234 0 0 0 chr11 85610221 85610247 -63173225 + (TG)n Simple_repeat Simple_repeat 1 26 0 248 302 101 113 chr11 85610411 85610457 -63173015 + L2 LINE L2 3027 3072 -200 4159 102 32 8 chr11 85610457 85611077 -63172395 + MER41B LTR ERV1 1 635 0 248 302 101 113 chr11 85611077 85611278 -63172194 + L2 LINE L2 3072 3271 -1 1424 116 10 0 chr11 85611936 85612134 -63171338 - AluSg/x SINE Alu -25 287 88 2200 98 17 3 chr11 85613256 85613553 -63169919 - AluY SINE Alu -10 301 1 2413 217 112 29 chr11 85613934 85614580 -63168892 - L1MCa LINE L1 -5709 717 19 342 297 172 0 chr11 85615464 85615592 -63167880 + L2 LINE L2 3162 3311 -2 2021 135 3 7 chr11 85616153 85616456 -63167016 + AluSx SINE Alu 1 302 -10 1242 150 0 39 chr11 85617749 85617979 -63165493 + AluJo SINE Alu 86 307 0 1173 252 87 95 chr11 85618530 85619663 -63163809 - L1M4 LINE L1 -1425 4721 3599 11610 84 3 3 chr11 85619766 85621293 -63162179 - HERVK22 LTR ERVK -4334 2503 977 261 0 0 0 chr11 85622068 85622097 -63161375 + (A)n Simple_repeat Simple_repeat 1 29 0 322 367 51 25 chr11 85622799 85622995 -63160477 + MIR SINE MIR 16 216 -46 204 279 206 15 chr11 85624245 85624381 -63159091 - MIR SINE MIR -17 245 84 223 376 10 0 chr11 85624911 85625012 -63158460 - MIR SINE MIR -112 150 49 1876 135 0 68 chr11 85625039 85625364 -63158108 - AluJo SINE Alu -9 303 1 230 352 113 38 chr11 85625565 85625909 -63157563 - L2 LINE L2 -961 2353 1984 362 289 113 6 chr11 85626143 85626302 -63157170 + L2 LINE L2 3089 3264 -49 962 165 99 11 chr11 85626307 85626489 -63156983 + MER58A DNA MER1_type 27 224 0 229 246 16 33 chr11 85626489 85626550 -63156922 + L2 LINE L2 3254 3313 0 331 234 19 37 chr11 85626591 85626698 -63156774 + MIR SINE MIR 97 201 -61 23 0 0 0 chr11 85627224 85627247 -63156225 + AT_rich Low_complexity Low_complexity 1 23 0 448 309 118 0 chr11 85628355 85628507 -63154965 + MIR SINE MIR 37 206 -56 714 214 8 0 chr11 85630436 85630567 -63152905 - L1PA16 LINE L1 -40 6126 5995 813 168 0 0 chr11 85630749 85630868 -63152604 + FLAM_C SINE Alu 2 120 -23 414 204 0 23 chr11 85631074 85631162 -63152310 + L1MC1 LINE L1 6239 6324 -9 297 269 78 36 chr11 85631998 85632165 -63151307 - MIR SINE MIR -44 218 45 23 0 0 0 chr11 85632278 85632301 -63151171 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr11 85633831 85633855 -63149617 + AT_rich Low_complexity Low_complexity 1 24 0 203 191 0 24 chr11 85634201 85634243 -63149229 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 1881 165 3 0 chr11 85634443 85634752 -63148720 + AluSx SINE Alu 1 310 -2 371 270 95 8 chr11 85636012 85636138 -63147334 + MIR SINE MIR 20 156 -106 2168 110 7 0 chr11 85636220 85636512 -63146960 + AluSc SINE Alu 1 294 -15 457 243 14 0 chr11 85636545 85636689 -63146783 + (TA)n Simple_repeat Simple_repeat 1 146 0 298 293 12 0 chr11 85636962 85637044 -63146428 + MLT1J2 LTR MaLR 49 131 -319 258 308 47 9 chr11 85637101 85637208 -63146264 + MLT1J1 LTR MaLR 149 259 -187 265 289 135 51 chr11 85637721 85637877 -63145595 + MIR SINE MIR 5 173 -89 234 81 0 0 chr11 85638206 85638243 -63145229 + (A)n Simple_repeat Simple_repeat 1 37 0 209 206 130 109 chr11 85638916 85639008 -63144464 + MIR SINE MIR 61 154 -108 259 364 0 10 chr11 85639079 85639178 -63144294 - MIR3 SINE MIR -108 100 3 802 293 95 58 chr11 85639285 85639864 -63143608 - L2 LINE L2 0 3313 2707 647 46 37 9 chr11 85639926 85640034 -63143438 + (TAGA)n Simple_repeat Simple_repeat 2 112 0 722 209 13 20 chr11 85641177 85641330 -63142142 + MLT1E1 LTR MaLR 503 654 0 1573 210 71 9 chr11 85641527 85641862 -63141610 - MLT1A1 LTR MaLR 0 396 1 341 156 0 31 chr11 85642035 85642099 -63141373 + MER82 DNA MER2_type 329 390 -263 264 279 25 0 chr11 85642245 85642324 -63141148 - MER82 DNA MER2_type -8 645 565 * 355 136 0 33 chr11 85642312 85642384 -63141088 + FRAM/FAM SINE Alu 16 73 -102 872 145 28 7 chr11 85642447 85642592 -63140880 + AluJb SINE Alu 152 299 -13 2722 220 14 16 chr11 85642592 85643169 -63140303 - MER82 DNA MER2_type -76 577 2 279 321 25 0 chr11 85643299 85643380 -63140092 - L2 LINE L2 -40 3232 3150 29 28 0 0 chr11 85644264 85644300 -63139172 + AT_rich Low_complexity Low_complexity 1 36 0 257 242 33 0 chr11 85644582 85644673 -63138799 - L1MC4 LINE L1 -1335 6707 6614 21 71 0 0 chr11 85644816 85644858 -63138614 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr11 85645399 85645422 -63138050 + AT_rich Low_complexity Low_complexity 1 23 0 262 203 63 38 chr11 85646220 85646299 -63137173 + MIR SINE MIR 126 206 -56 1561 206 31 0 chr11 85648091 85648382 -63135090 - AluJb SINE Alu -12 300 1 654 329 52 70 chr11 85648386 85649271 -63134201 + L2 LINE L2 2035 2903 -411 3151 150 41 6 chr11 85649284 85649825 -63133647 + Tigger3b DNA MER2_type 1 560 -671 528 215 87 13 chr11 85651026 85651175 -63132297 + MER112 DNA MER1_type 1 160 -100 258 291 70 59 chr11 85652248 85652519 -63130953 - L1MC4 LINE L1 -2253 5555 5282 715 276 122 19 chr11 85652824 85653309 -63130163 - L1MC4 LINE L1 -2718 3428 2894 252 301 12 48 chr11 85653761 85653844 -63129628 - L2 LINE L2 -2 3270 3191 233 345 53 58 chr11 85654343 85654514 -63128958 - MIR SINE MIR -30 232 63 189 345 126 17 chr11 85654846 85654965 -63128507 - L2 LINE L2 0 3272 3141 23 68 0 0 chr11 85655322 85655366 -63128106 + AT_rich Low_complexity Low_complexity 1 44 0 306 0 0 0 chr11 85655856 85655890 -63127582 + (TG)n Simple_repeat Simple_repeat 1 34 0 367 376 17 17 chr11 85656035 85656213 -63127259 - MIR3 SINE MIR -10 198 21 22 35 0 0 chr11 85656298 85656327 -63127145 + AT_rich Low_complexity Low_complexity 1 29 0 653 228 0 8 chr11 85656921 85657048 -63126424 + FLAM_A SINE Alu 1 126 -7 885 63 16 8 chr11 85657864 85657990 -63125482 + AluY SINE Alu 1 127 -184 285 246 14 0 chr11 85659893 85659962 -63123510 + GA-rich Low_complexity Low_complexity 3 72 0 25 65 0 0 chr11 85660533 85660579 -63122893 + AT_rich Low_complexity Low_complexity 1 46 0 970 187 6 12 chr11 85661017 85661188 -63122284 + L1M2a LINE L1 1819 1988 -5180 * 2025 217 25 4 chr11 85661179 85661654 -63121818 + L1M2a LINE L1 2761 3247 -3920 1291 230 106 0 chr11 85661659 85662151 -63121321 + L1M2a LINE L1 3805 4348 -2819 21 36 0 0 chr11 85662503 85662531 -63120941 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 85663934 85663955 -63119517 + AT_rich Low_complexity Low_complexity 1 21 0 542 253 114 98 chr11 85664337 85664713 -63118759 + L2 LINE L2 2932 3313 0 322 132 26 0 chr11 85665030 85665106 -63118366 + (TATG)n Simple_repeat Simple_repeat 3 80 0 285 301 131 59 chr11 85665538 85665691 -63117781 - L2 LINE L2 -5 3267 3104 34 0 0 0 chr11 85665837 85665871 -63117601 + AT_rich Low_complexity Low_complexity 1 34 0 180 167 0 71 chr11 85667208 85667250 -63116222 - MER5B DNA MER1_type -16 162 124 224 290 9 75 chr11 85667426 85667533 -63115939 + L2 LINE L2 3214 3313 0 381 268 0 0 chr11 85667626 85667723 -63115749 + L1MC4 LINE L1 7930 8026 -16 317 244 88 75 chr11 85667785 85667945 -63115527 - L1MC4a LINE L1 -1740 6068 5907 1088 249 121 27 chr11 85667946 85668276 -63115196 + MLT1A1 LTR MaLR 1 361 -4 204 231 0 0 chr11 85668299 85668338 -63115134 + CT-rich Low_complexity Low_complexity 2 40 0 264 274 0 53 chr11 85668341 85668436 -63115036 - L1MC4a LINE L1 -1908 5900 5811 936 297 43 11 chr11 85668491 85668841 -63114631 - L1MC4a LINE L1 -2099 5709 5349 293 285 128 24 chr11 85669176 85669552 -63113920 - L1MC4a LINE L1 -1100 5046 4632 21 0 0 0 chr11 85669835 85669856 -63113616 + AT_rich Low_complexity Low_complexity 1 21 0 375 197 88 138 chr11 85670294 85670413 -63113059 - MIR SINE MIR -28 234 124 1853 139 13 17 chr11 85670413 85670714 -63112758 + AluSx SINE Alu 1 300 -12 375 197 88 138 chr11 85670714 85670788 -63112684 - MIR SINE MIR -138 124 48 21 0 0 0 chr11 85671287 85671308 -63112164 + AT_rich Low_complexity Low_complexity 1 21 0 306 148 0 0 chr11 85671846 85671900 -63111572 + (TTCC)n Simple_repeat Simple_repeat 4 57 0 362 268 31 39 chr11 85671937 85672064 -63111408 - L2 LINE L2 -1 3312 3187 181 284 30 45 chr11 85673907 85673974 -63109498 + L3b LINE CR1 1426 1491 -92 400 204 82 20 chr11 85674024 85674122 -63109350 + MLT1D LTR MaLR 402 505 0 329 0 0 24 chr11 85674920 85674962 -63108510 + (CA)n Simple_repeat Simple_repeat 2 42 0 1194 115 154 21 chr11 85676046 85676280 -63107192 + AluSg1 SINE Alu 13 277 -32 1287 247 78 67 chr11 85676410 85676949 -63106523 + MER41C LTR ERV1 1 545 -9 1480 199 116 72 chr11 85676984 85677486 -63105986 + LTR1B LTR ERV1 1 524 -302 21 0 0 0 chr11 85677996 85678017 -63105455 + AT_rich Low_complexity Low_complexity 1 21 0 315 0 0 0 chr11 85680159 85680194 -63103278 + (TG)n Simple_repeat Simple_repeat 1 35 0 881 163 49 25 chr11 85680209 85680412 -63103060 - L1MB8 LINE L1 -14 6164 5957 1747 245 48 41 chr11 85680450 85680680 -63102792 - L1M4 LINE L1 -1156 5801 5574 1405 194 9 53 chr11 85680680 85680999 -63102473 - AluJo SINE Alu -7 305 1 1747 245 48 41 chr11 85680999 85681348 -63102124 - L1M4 LINE L1 -1383 5574 5218 1023 255 30 6 chr11 85681336 85681673 -63101799 - L1M4 LINE L1 -2462 4495 4151 * 3039 193 53 14 chr11 85681681 85682377 -63101095 + L1 LINE L1 3960 4682 -1464 2340 246 84 17 chr11 85682372 85683018 -63100454 - L1M4 LINE L1 -5745 1114 426 * 2245 196 87 4 chr11 85683041 85683510 -63099962 + LTR22 LTR ERVK 1 508 -1 12113 102 11 5 chr11 85683514 85685224 -63098248 + HERVK22 LTR ERVK 1 1720 -5117 6930 113 17 32 chr11 85685333 85686738 -63096734 + HERVH LTR ERV1 178 1871 -5842 4385 200 20 31 chr11 85686870 85688334 -63095138 - L1P4 LINE L1 -485 5681 4243 216 313 0 0 chr11 85688435 85688515 -63094957 + G-rich Low_complexity Low_complexity 1 80 0 357 276 22 0 chr11 85688571 85688705 -63094767 - L1P LINE L1 -1049 5097 4961 250 217 0 17 chr11 85688707 85688767 -63094705 - MLT1F1 LTR MaLR -508 59 1 3154 98 29 22 chr11 85689591 85690079 -63093393 - MLT2A1 LTR ERVL 0 520 1 977 105 0 13 chr11 85690079 85690232 -63093240 - HERVL-A1 LTR ERVL 0 5654 5504 400 335 104 14 chr11 85691142 85691363 -63092109 + MIR SINE MIR 22 262 0 303 275 29 0 chr11 85692378 85692447 -63091025 - L2 LINE L2 -11 3302 3232 207 111 0 28 chr11 85692480 85692516 -63090956 + (TTA)n Simple_repeat Simple_repeat 2 36 0 5174 82 10 7 chr11 85692886 85693585 -63089887 - HERVL-A1 LTR ERVL -148 5506 4806 1726 87 0 0 chr11 85693581 85693810 -63089662 - HERVL-A1 LTR ERVL -5425 229 1 * 2867 85 85 10 chr11 85693810 85693850 -63089622 - MLT2A1 LTR ERVL 0 444 408 879 32 40 0 chr11 85693850 85693975 -63089497 + (TAGA)n Simple_repeat Simple_repeat 4 133 0 2867 85 85 10 chr11 85693975 85694347 -63089125 - MLT2A1 LTR ERVL -36 408 1 407 371 0 8 chr11 85694897 85695029 -63088443 - L2 LINE L2 -1 3271 3141 39 38 0 0 chr11 85695074 85695127 -63088345 + AT_rich Low_complexity Low_complexity 1 53 0 399 149 39 0 chr11 85695127 85695281 -63088191 + (TA)n Simple_repeat Simple_repeat 1 160 0 22 0 0 0 chr11 85695286 85695308 -63088164 + AT_rich Low_complexity Low_complexity 1 22 0 5575 178 56 5 chr11 85695628 85696743 -63086729 - L1MC3 LINE L1 -228 7557 6387 459 290 229 4 chr11 85696743 85696974 -63086498 - L2 LINE L2 -1309 2005 1723 459 327 50 32 chr11 85697027 85697247 -63086225 - L3 LINE CR1 -65 1512 1289 1902 98 4 0 chr11 85697263 85697538 -63085934 - L1PA7 LINE L1 0 6154 5879 2105 128 3 16 chr11 85697554 85697858 -63085614 + AluSx SINE Alu 1 300 -12 313 359 55 11 chr11 85698142 85698323 -63085149 - MIR SINE MIR -23 239 51 34 55 0 0 chr11 85698579 85698634 -63084838 + AT_rich Low_complexity Low_complexity 1 55 0 249 394 0 20 chr11 85698655 85698754 -63084718 - L2 LINE L2 -209 3063 2967 180 349 101 48 chr11 85700223 85700412 -63083060 + MIR3 SINE MIR 7 205 -3 2103 113 6 35 chr11 85701282 85701626 -63081846 - MER1B DNA MER1_type 0 337 4 223 280 150 20 chr11 85701777 85701877 -63081595 + L2 LINE L2 3159 3271 -1 1714 184 89 82 chr11 85702233 85702706 -63080766 + MLT2C2 LTR ERVL 3 520 0 478 122 22 33 chr11 85702863 85702953 -63080519 - L1MC1 LINE L1 0 6333 6245 1567 185 0 25 chr11 85703132 85703413 -63080059 + MER1B DNA MER1_type 66 339 0 3060 197 23 24 chr11 85703417 85704122 -63079350 - L1MC/D LINE L1 -554 5779 5073 3833 132 21 10 chr11 85704122 85704750 -63078722 + MER41B LTR ERV1 1 635 0 3060 197 23 24 chr11 85704750 85705329 -63078143 - L1MC/D LINE L1 -1260 5073 4495 602 219 70 0 chr11 85705369 85705483 -63077989 - FLAM_A SINE Alu -8 125 4 2578 245 38 9 chr11 85705496 85706292 -63077180 - L1MC/D LINE L1 -2313 3833 3015 631 169 137 0 chr11 85706327 85706451 -63077021 - Tigger1 DNA MER2_type -2276 142 2 265 331 63 24 chr11 85706608 85706735 -63076737 + L2 LINE L2 3139 3270 -2 22 0 0 0 chr11 85707735 85707757 -63075715 + AT_rich Low_complexity Low_complexity 1 22 0 180 345 24 0 chr11 85707780 85707864 -63075608 + MIR SINE MIR 118 203 -59 225 119 0 0 chr11 85708337 85708379 -63075093 + (TTCA)n Simple_repeat Simple_repeat 1 42 0 185 338 59 0 chr11 85708726 85708794 -63074678 - L2 LINE L2 -8 3264 3193 608 284 55 6 chr11 85709014 85709197 -63074275 - MIR SINE MIR -26 236 45 191 363 88 9 chr11 85709205 85709318 -63074154 - L2 LINE L2 -613 2701 2580 493 310 77 50 chr11 85709346 85709643 -63073829 - HAL1 LINE L1 -1110 1397 1093 917 307 198 22 chr11 85709759 85710662 -63072810 - HAL1 LINE L1 -1441 1066 5 259 208 0 0 chr11 85711417 85711465 -63072007 + MIR SINE MIR 106 153 -109 204 265 15 29 chr11 85711926 85711994 -63071478 - L2 LINE L2 0 3272 3206 298 308 19 28 chr11 85712534 85712641 -63070831 - L2 LINE L2 -23 3290 3185 23 33 0 0 chr11 85712657 85712687 -63070785 + AT_rich Low_complexity Low_complexity 1 30 0 417 364 35 9 chr11 85713146 85713374 -63070098 - L2 LINE L2 -222 3050 2817 943 172 42 0 chr11 85713412 85713604 -63069868 - L1MC3 LINE L1 -32 7753 7554 37935 89 7 5 chr11 85713723 85718855 -63064617 + HERVK22 LTR ERVK 1692 6837 0 2298 186 94 9 chr11 85718855 85719322 -63064150 + LTR22 LTR ERVK 1 507 -2 347 352 0 0 chr11 85719341 85719446 -63064026 - L1M4b LINE L1 -6464 395 291 633 280 26 15 chr11 85719461 85719676 -63063796 - L1M4 LINE L1 -6319 536 11 182 222 67 0 chr11 85720090 85720135 -63063337 + MIR SINE MIR 88 135 -127 303 313 54 0 chr11 85721133 85721245 -63062227 + L2 LINE L2 3196 3313 0 8243 149 33 16 chr11 85722073 85722846 -63060626 - Tigger1 DNA MER2_type 0 2418 1607 2173 97 3 26 chr11 85722846 85723154 -63060318 + AluY SINE Alu 1 301 -10 8243 149 33 16 chr11 85723154 85723819 -63059653 - Tigger1 DNA MER2_type -811 1607 955 369 121 0 33 chr11 85724012 85724103 -63059369 + (TA)n Simple_repeat Simple_repeat 2 89 0 399 333 98 18 chr11 85724121 85724346 -63059126 + MIR SINE MIR 20 262 0 236 397 60 21 chr11 85725483 85725717 -63057755 + MIR SINE MIR 1 243 -19 255 400 25 12 chr11 85725986 85726146 -63057326 - MIR SINE MIR -30 178 17 214 337 74 11 chr11 85726314 85726409 -63057063 + MIR SINE MIR 48 148 -114 238 244 17 0 chr11 85726776 85726895 -63056577 + (CATATA)n Simple_repeat Simple_repeat 2 122 0 493 240 0 62 chr11 85726926 85727118 -63056354 + (TA)n Simple_repeat Simple_repeat 1 180 0 453 258 16 28 chr11 85727151 85727333 -63056139 + (CATATA)n Simple_repeat Simple_repeat 1 180 0 453 280 23 0 chr11 85727316 85727491 -63055981 + (TA)n Simple_repeat Simple_repeat 2 180 0 393 223 0 0 chr11 85727515 85727609 -63055863 + (TATATG)n Simple_repeat Simple_repeat 3 96 0 294 285 131 8 chr11 85728412 85728542 -63054930 + MIR SINE MIR 9 154 -108 251 322 26 61 chr11 85728771 85728886 -63054586 + L2 LINE L2 3142 3252 -20 181 385 106 11 chr11 85728944 85729123 -63054349 - MIR3 SINE MIR -10 198 3 286 373 35 7 chr11 85729738 85729880 -63053592 + MIR SINE MIR 15 160 -102 658 336 83 18 chr11 85730237 85730576 -63052896 + MLT1I LTR MaLR 49 409 0 261 152 0 0 chr11 85732733 85732779 -63050693 - Alu SINE Alu -7 301 256 1310 123 28 9 chr11 85732882 85733093 -63050379 - AluSc SINE Alu -94 215 1 384 262 63 40 chr11 85733746 85733866 -63049606 + MIR SINE MIR 29 152 -105 2300 64 14 0 chr11 85733866 85734148 -63049324 + AluY SINE Alu 1 286 -25 23 0 0 0 chr11 85734153 85734176 -63049296 + AT_rich Low_complexity Low_complexity 1 23 0 187 280 102 25 chr11 85734176 85734294 -63049178 + MIR SINE MIR 136 262 0 323 269 17 34 chr11 85734777 85734896 -63048576 + MLT1J LTR MaLR 391 507 -4 314 380 63 51 chr11 85734910 85735244 -63048228 + L2 LINE L2 2934 3271 -1 183 377 15 46 chr11 85736479 85736609 -63046863 - L2 LINE L2 -194 3078 2953 773 272 121 28 chr11 85736859 85737149 -63046323 - L2 LINE L2 -1 3312 2996 2220 112 0 0 chr11 85737167 85737470 -63046002 - AluSg SINE Alu -7 303 1 615 263 21 42 chr11 85737502 85737692 -63045780 + MIR SINE MIR 76 261 -1 802 327 145 10 chr11 85737773 85738467 -63045005 + L2 LINE L2 2469 3272 -41 191 36 36 0 chr11 85738472 85738500 -63044972 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 181 390 140 41 chr11 85738731 85739046 -63044426 + L2 LINE L2 2920 3265 -7 24 53 0 0 chr11 85739529 85739567 -63043905 + AT_rich Low_complexity Low_complexity 1 38 0 2104 144 20 53 chr11 85740279 85740361 -63043111 + MER51B LTR ERV1 1 84 -293 2241 115 0 10 chr11 85740361 85740673 -63042799 - AluSx SINE Alu -1 311 3 2104 144 20 53 chr11 85740673 85741049 -63042423 + MER51B LTR ERV1 84 377 0 253 282 27 36 chr11 85742688 85742798 -63040674 - MIR SINE MIR -6 256 148 1961 121 26 13 chr11 85742830 85743136 -63040336 - AluSq SINE Alu -3 310 1 284 0 0 27 chr11 85743915 85743952 -63039520 + (CA)n Simple_repeat Simple_repeat 1 36 0 751 275 123 32 chr11 85744063 85744557 -63038915 + MLT1L LTR MaLR 15 553 -62 1017 244 56 60 chr11 85745651 85745665 -63037807 - L1MEc LINE L1 -3758 2469 2456 1898 98 0 0 chr11 85745665 85745921 -63037551 - AluSq SINE Alu -2 311 56 1017 244 56 60 chr11 85745921 85746450 -63037022 - L1MEc LINE L1 -3771 2456 1957 827 285 109 33 chr11 85746460 85747348 -63036124 - L1MEc LINE L1 -4584 1812 857 607 321 96 31 chr11 85747407 85748107 -63035365 - L1MEc LINE L1 -5617 779 35 1248 299 54 11 chr11 85748109 85748549 -63034923 - L2 LINE L2 -277 3036 2583 355 338 157 14 chr11 85749715 85750135 -63033337 - L2 LINE L2 -3 3310 2831 198 0 0 0 chr11 85750663 85750685 -63032787 + (CA)n Simple_repeat Simple_repeat 2 23 0 203 0 37 0 chr11 85751066 85751093 -63032379 + (TTTTTA)n Simple_repeat Simple_repeat 2 29 0 261 57 0 0 chr11 85751569 85751604 -63031868 + (TG)n Simple_repeat Simple_repeat 1 35 0 21 82 0 0 chr11 85752081 85752130 -63031342 + AT_rich Low_complexity Low_complexity 1 49 0 1167 223 88 6 chr11 85752282 85752600 -63030872 - L1MA9 LINE L1 0 6312 5969 397 288 48 7 chr11 85753499 85753645 -63029827 + MIR SINE MIR 73 224 -38 2623 185 28 13 chr11 85754042 85754948 -63028524 - L1M3 LINE L1 -557 5777 4782 246 194 236 0 chr11 85755272 85755344 -63028128 - L2 LINE L2 -2 3311 3223 506 299 5 33 chr11 85755593 85755777 -63027695 + MIR SINE MIR 83 261 -1 475 357 45 12 chr11 85756181 85756425 -63027047 + MIR SINE MIR 8 259 -3 211 264 42 42 chr11 85756512 85756584 -63026888 + L2 LINE L2 3201 3272 0 526 231 64 17 chr11 85756685 85756858 -63026614 + MER53 DNA DNA 9 189 0 4749 246 30 15 chr11 85757071 85757138 -63026334 - L1PA15-16 LINE L1 -3004 4580 4516 2055 135 3 3 chr11 85757138 85757442 -63026030 - AluSx SINE Alu -8 304 1 4749 246 30 15 chr11 85757442 85759366 -63024106 - L1PA15-16 LINE L1 -3068 4516 2553 859 311 49 21 chr11 85759615 85760001 -63023471 - L1PA15-16 LINE L1 -4990 2591 2195 608 262 48 71 chr11 85761286 85761538 -63021934 + MIR SINE MIR 11 256 -6 392 384 52 34 chr11 85762193 85762546 -63020926 - L3 LINE CR1 -6 1571 1209 2104 118 3 3 chr11 85762546 85762843 -63020629 - AluSx SINE Alu -11 301 5 392 384 52 34 chr11 85762843 85762877 -63020595 - L3 LINE CR1 -368 1209 1177 531 382 14 0 chr11 85763140 85763347 -63020125 + MIR SINE MIR 2 211 -51 373 324 19 0 chr11 85763402 85763507 -63019965 + MIR SINE MIR 41 147 -115 384 271 76 7 chr11 85763507 85763651 -63019821 + MLT1G1 LTR MaLR 1 154 -441 384 239 154 56 chr11 85763882 85764310 -63019162 - L1 LINE L1 -2839 4009 1647 415 93 13 27 chr11 85764324 85764399 -63019073 + (TTCC)n Simple_repeat Simple_repeat 3 76 0 486 254 44 43 chr11 85764560 85764774 -63018698 + MLT1F1 LTR MaLR 377 567 0 192 286 41 0 chr11 85764781 85764830 -63018642 + MIR SINE MIR 151 201 -61 773 251 28 0 chr11 85764851 85765030 -63018442 - MER5A DNA MER1_type -1 188 5 225 196 0 0 chr11 85765333 85765384 -63018088 + GA-rich Low_complexity Low_complexity 2 52 0 23 0 0 0 chr11 85765493 85765516 -63017956 + AT_rich Low_complexity Low_complexity 1 23 0 205 86 29 0 chr11 85765574 85765609 -63017863 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 2865 183 50 7 chr11 85766396 85766975 -63016497 + MER6A DNA MER2_type 1 604 -1 363 168 0 112 chr11 85767607 85767803 -63015669 + A-rich Low_complexity Low_complexity 3 176 0 21 36 0 0 chr11 85767809 85767837 -63015635 + AT_rich Low_complexity Low_complexity 1 28 0 2595 12 23 0 chr11 85767944 85768285 -63015187 - L1P2 LINE L1 -584 5571 5226 279 328 36 12 chr11 85768454 85768638 -63014834 + MIR3 SINE MIR 1 218 -44 1939 122 4 7 chr11 85769281 85769560 -63013912 - AluSx SINE Alu -25 287 10 476 298 55 33 chr11 85770145 85770326 -63013146 - MIR SINE MIR -25 237 53 1445 272 32 5 chr11 85770880 85771288 -63012184 - LTR16A LTR ERVL -7 443 25 1138 220 67 72 chr11 85771692 85772083 -63011389 - MLT1B LTR MaLR -1 389 1 263 258 0 45 chr11 85772546 85772635 -63010837 + L1ME4a LINE L1 5597 5681 -440 296 312 24 24 chr11 85772899 85773069 -63010403 + L1ME4a LINE L1 5947 6116 -5 228 304 51 0 chr11 85773135 85773214 -63010258 - MIR SINE MIR 0 262 180 211 212 246 42 chr11 85773502 85773620 -63009852 - MIR3 SINE MIR -35 173 32 934 100 15 0 chr11 85774120 85774250 -63009222 + AluSq/x SINE Alu 1 132 -181 1270 20 26 0 chr11 85775225 85775378 -63008094 - L1PA3 LINE L1 0 6155 5999 23 54 0 0 chr11 85775616 85775653 -63007819 + AT_rich Low_complexity Low_complexity 1 37 0 2059 118 0 0 chr11 85775653 85775933 -63007539 + AluSg SINE Alu 3 282 -28 261 0 0 0 chr11 85775933 85775962 -63007510 + (TTAA)n Simple_repeat Simple_repeat 3 31 0 359 238 146 53 chr11 85776486 85776637 -63006835 - L2 LINE L2 0 3313 3149 1889 326 57 36 chr11 85776645 85777824 -63005648 - L2 LINE L2 -1 3271 2053 192 344 64 32 chr11 85777984 85778202 -63005270 - L2 LINE L2 -662 2652 2428 755 198 32 16 chr11 85778897 85779084 -63004388 - L1MA4 LINE L1 -6 6294 6105 27 0 0 0 chr11 85779197 85779224 -63004248 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr11 85779358 85779381 -63004091 + AT_rich Low_complexity Low_complexity 1 23 0 409 301 78 0 chr11 85780976 85781079 -63002393 - MIR SINE MIR -146 116 6 236 198 74 12 chr11 85781214 85781295 -63002177 + L1MC4 LINE L1 6618 6703 -1339 21 57 0 0 chr11 85781295 85781330 -63002142 + AT_rich Low_complexity Low_complexity 1 35 0 273 119 0 0 chr11 85781355 85781397 -63002075 + (TA)n Simple_repeat Simple_repeat 1 42 0 282 278 0 0 chr11 85781400 85781490 -63001982 - L1MC4 LINE L1 -1339 6703 6614 258 224 0 82 chr11 85781492 85781590 -63001882 - L1MC4 LINE L1 -1339 6703 6614 234 0 0 0 chr11 85781592 85781618 -63001854 + (TG)n Simple_repeat Simple_repeat 2 27 0 1787 140 20 10 chr11 85781629 85781922 -63001550 - AluSx SINE Alu -16 296 1 193 305 25 8 chr11 85782036 85782154 -63001318 + L2 LINE L2 964 1083 -2231 275 315 0 0 chr11 85782160 85782287 -63001185 + C-rich Low_complexity Low_complexity 1 127 0 22 0 0 0 chr11 85782972 85782994 -63000478 + AT_rich Low_complexity Low_complexity 1 22 0 1198 232 28 67 chr11 85783179 85783537 -62999935 - MLT1A2 LTR MaLR -4 370 27 523 273 101 40 chr11 85784063 85784360 -62999112 - L1ME2 LINE L1 -10 6154 5840 577 292 69 64 chr11 85784377 85784861 -62998611 + L2 LINE L2 2768 3252 -61 206 378 70 6 chr11 85785150 85785306 -62998166 - MIR SINE MIR -41 221 56 197 267 93 40 chr11 85785401 85785476 -62997996 - MIR SINE MIR -56 206 128 2321 88 104 11 chr11 85785619 85785995 -62997477 - LTR7 LTR ERV1 -38 412 2 2314 98 53 13 chr11 85785996 85786373 -62997099 - HERVH LTR ERV1 0 7713 7322 803 110 47 8 chr11 85786371 85786498 -62996974 - HERVH LTR ERV1 -1894 5819 5688 * 978 281 112 45 chr11 85786709 85787469 -62996003 + L2 LINE L2 2511 3313 0 297 331 55 47 chr11 85787479 85787990 -62995482 - L1ME2 LINE L1 -359 5811 5297 28 48 0 0 chr11 85788058 85788100 -62995372 + AT_rich Low_complexity Low_complexity 1 42 0 226 156 67 0 chr11 85789238 85789283 -62994189 + MLT1L LTR MaLR 1 48 -567 282 260 29 0 chr11 85789293 85789397 -62994075 + (TA)n Simple_repeat Simple_repeat 1 107 0 481 223 36 27 chr11 85789404 85789516 -62993956 + MLT1J LTR MaLR 91 203 -308 672 257 52 93 chr11 85789571 85790162 -62993310 - L1MEc LINE L1 -3557 2658 2121 234 0 0 0 chr11 85790212 85790238 -62993234 + (TG)n Simple_repeat Simple_repeat 1 26 0 335 184 11 0 chr11 85790516 85790603 -62992869 + GA-rich Low_complexity Low_complexity 1 88 0 225 274 84 21 chr11 85791341 85791436 -62992036 + MIR SINE MIR 117 217 -45 235 211 200 22 chr11 85791594 85791684 -62991788 + MIR SINE MIR 64 169 -93 590 332 123 31 chr11 85793112 85793624 -62989848 + L2 LINE L2 1731 2289 -1025 297 165 0 33 chr11 85793624 85793715 -62989757 + (TA)n Simple_repeat Simple_repeat 1 88 0 321 313 0 0 chr11 85793950 85794046 -62989426 - MIR SINE MIR -81 181 86 284 367 85 0 chr11 85794144 85794321 -62989151 + L2 LINE L2 2804 2995 -277 363 252 61 46 chr11 85795207 85795338 -62988134 + L2 LINE L2 3176 3308 -5 211 378 0 0 chr11 85795443 85795525 -62987947 + L2 LINE L2 2804 2885 -428 * 240 309 48 12 chr11 85795501 85795585 -62987887 - MIR SINE MIR -69 193 107 315 272 158 28 chr11 85796425 85796679 -62986793 - L1ME4a LINE L1 -3 6118 5832 457 276 19 39 chr11 85796757 85796913 -62986559 + MIR SINE MIR 45 197 -65 256 358 55 21 chr11 85797042 85797372 -62986100 - L1ME4a LINE L1 -517 5604 5264 238 260 90 85 chr11 85798550 85798727 -62984745 - MIR SINE MIR -56 206 29 321 89 0 0 chr11 85799138 85799183 -62984289 + (TG)n Simple_repeat Simple_repeat 2 46 0 557 170 36 0 chr11 85799184 85799296 -62984176 - L1PA16 LINE L1 -9 6157 6042 373 226 32 11 chr11 85799404 85799497 -62983975 - MLT1I LTR MaLR -308 101 7 368 82 0 0 chr11 85799746 85799795 -62983677 + MADE1 DNA Mariner 31 79 -1 248 336 151 8 chr11 85799877 85799996 -62983476 + MIR3 SINE MIR 72 207 -1 235 255 11 64 chr11 85800070 85800164 -62983308 + MER117 DNA MER1_type 1 89 -108 21 0 0 0 chr11 85801081 85801102 -62982370 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 85801134 85801155 -62982317 + AT_rich Low_complexity Low_complexity 1 21 0 770 189 47 63 chr11 85801422 85801612 -62981860 - MER3 DNA MER1_type -8 201 15 228 35 0 0 chr11 85801926 85801955 -62981517 + (TG)n Simple_repeat Simple_repeat 2 30 0 474 340 106 27 chr11 85802138 85802656 -62980816 - L1MEd LINE L1 -4549 2014 1307 * 574 358 71 25 chr11 85802653 85803089 -62980383 - L1MEd LINE L1 -5000 1372 917 28 95 0 0 chr11 85803860 85803944 -62979528 + AT_rich Low_complexity Low_complexity 1 84 0 644 268 47 0 chr11 85804194 85804407 -62979065 + MER58A DNA MER1_type 1 106 -1 822 168 0 0 chr11 85804429 85804554 -62978918 - FLAM_C SINE Alu -18 125 1 405 215 116 33 chr11 85804556 85804677 -62978795 + MER58A DNA MER1_type 94 224 0 225 355 112 18 chr11 85805759 85805928 -62977544 - MIR SINE MIR -20 242 58 483 322 70 9 chr11 85806038 85806252 -62977220 + MIR SINE MIR 16 242 -20 491 337 147 8 chr11 85806595 85807169 -62976303 - L2 LINE L2 -131 3182 2486 2056 121 7 10 chr11 85807592 85807898 -62975574 - AluSx SINE Alu -7 305 1 334 305 76 38 chr11 85808882 85809092 -62974380 + MIR SINE MIR 30 247 -15 182 188 42 21 chr11 85809538 85809586 -62973886 + L2 LINE L2 3224 3272 0 290 306 0 14 chr11 85810030 85810102 -62973370 - MER91 DNA MER1_type -1 189 119 21 0 0 0 chr11 85810942 85810963 -62972509 + AT_rich Low_complexity Low_complexity 1 21 0 197 289 70 53 chr11 85812325 85812439 -62971033 - MIR SINE MIR -30 232 117 28 0 0 0 chr11 85812697 85812725 -62970747 + AT_rich Low_complexity Low_complexity 1 28 0 187 304 18 18 chr11 85813909 85813965 -62969507 + MIR SINE MIR 90 145 -117 21 36 0 0 chr11 85815676 85815704 -62967768 + AT_rich Low_complexity Low_complexity 1 28 0 239 341 12 0 chr11 85816035 85816117 -62967355 - MIR SINE MIR -171 91 9 732 211 0 39 chr11 85816402 85816582 -62966890 + L1MA9 LINE L1 6116 6288 -24 22 56 0 0 chr11 85816686 85816722 -62966750 + AT_rich Low_complexity Low_complexity 1 36 0 264 336 34 81 chr11 85816840 85816989 -62966483 - MIR3 SINE MIR -62 146 5 22 0 0 0 chr11 85817970 85817992 -62965480 + AT_rich Low_complexity Low_complexity 1 22 0 626 306 87 43 chr11 85818740 85819109 -62964363 + MLT2C1 LTR ERVL 13 397 0 221 340 32 39 chr11 85819380 85819536 -62963936 + MIR SINE MIR 58 212 -50 1788 100 104 4 chr11 85819549 85819819 -62963653 - AluSc SINE Alu -2 307 11 27 49 0 0 chr11 85820853 85820894 -62962578 + AT_rich Low_complexity Low_complexity 1 41 0 443 340 100 3 chr11 85821326 85821685 -62961787 + L1 LINE L1 4256 4649 -1497 616 335 27 5 chr11 85822009 85822233 -62961239 + MIR SINE MIR 26 254 -8 281 304 34 61 chr11 85822655 85822803 -62960669 - MIR SINE MIR -12 250 107 352 271 205 20 chr11 85823818 85823969 -62959503 - MIR SINE MIR 0 262 84 235 337 35 0 chr11 85824052 85824138 -62959334 - L2 LINE L2 -359 2913 2825 1168 269 65 6 chr11 85824401 85824724 -62958748 - MLT1H1 LTR MaLR -160 395 54 5987 96 0 0 chr11 85824726 85825640 -62957832 - L1PA14 LINE L1 0 6161 5240 795 240 24 21 chr11 85875643 85875931 -62907541 - L1M4 LINE L1 -4996 1859 1571 * 3115 211 43 40 chr11 85875899 85876643 -62906829 - L1M4 LINE L1 -5948 911 166 1701 135 59 20 chr11 85876643 85876976 -62906496 + MLT2A2 LTR ERVL 1 309 -144 503 125 11 11 chr11 85877118 85877206 -62906266 - AluS SINE Alu -225 88 1 5446 154 28 21 chr11 85877209 85878159 -62905313 - MER66-int LTR ERV1 -4510 2166 1210 511 157 11 11 chr11 85878262 85878351 -62905121 - MER66-int LTR ERV1 -3574 3102 3014 373 250 97 8 chr11 85878345 85878469 -62905003 - MER66-int LTR ERV1 -6192 484 350 * 561 358 112 48 chr11 85878667 85879471 -62904001 + L2 LINE L2 2429 3271 -1 303 327 133 44 chr11 85879504 85879730 -62903742 + MIR SINE MIR 15 260 -2 189 74 0 0 chr11 85879730 85879757 -62903715 + (TAG)n Simple_repeat Simple_repeat 3 29 0 240 167 0 0 chr11 85880283 85880331 -62903141 + (TG)n Simple_repeat Simple_repeat 1 48 0 323 312 46 67 chr11 85880606 85880933 -62902539 - L1ME LINE L1 -306 5815 5496 634 282 58 79 chr11 85881244 85881574 -62901898 + L2 LINE L2 2988 3310 -3 23 0 0 0 chr11 85882343 85882366 -62901106 + AT_rich Low_complexity Low_complexity 1 23 0 266 346 37 9 chr11 85883063 85883170 -62900302 + MIR SINE MIR 45 154 -108 21 0 0 0 chr11 85884053 85884074 -62899398 + AT_rich Low_complexity Low_complexity 1 21 0 455 340 47 63 chr11 85884244 85884497 -62898975 - MIR SINE MIR -2 260 12 222 341 94 36 chr11 85884536 85884674 -62898798 - L2 LINE L2 0 3313 3168 183 376 26 0 chr11 85884912 85885029 -62898443 + L2 LINE L2 2543 2662 -652 450 130 26 0 chr11 85885199 85885276 -62898196 - MADE1 DNA Mariner 0 80 2 25 0 0 0 chr11 85886121 85886146 -62897326 + AT_rich Low_complexity Low_complexity 1 25 0 339 353 56 30 chr11 85886188 85886420 -62897052 + L2 LINE L2 2619 2856 -458 255 180 40 0 chr11 85886922 85886972 -62896500 + L2 LINE L2 3221 3272 0 208 283 83 0 chr11 85887328 85887388 -62896084 + MIR SINE MIR 85 149 -59 572 319 100 32 chr11 85887614 85887924 -62895548 + MLT1K LTR MaLR 137 467 -121 229 250 52 31 chr11 85888374 85888470 -62895002 - MIR SINE MIR -43 219 122 1368 156 124 18 chr11 85888476 85888758 -62894714 - MLT1D LTR MaLR -174 331 20 206 402 0 47 chr11 85888790 85888897 -62894575 - MIR SINE MIR -150 112 11 455 151 11 0 chr11 85889441 85889534 -62893938 + (TCTA)n Simple_repeat Simple_repeat 3 96 0 23 0 0 0 chr11 85889608 85889631 -62893841 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr11 85891000 85891022 -62892450 + AT_rich Low_complexity Low_complexity 1 22 0 205 336 160 0 chr11 85891457 85891582 -62891890 - MIR SINE MIR -116 146 2 22 70 0 0 chr11 85892629 85892672 -62890800 + AT_rich Low_complexity Low_complexity 1 43 0 26 30 0 0 chr11 85893212 85893245 -62890227 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr11 85894130 85894151 -62889321 + AT_rich Low_complexity Low_complexity 1 21 0 2114 78 0 11 chr11 85894241 85894524 -62888948 + AluY SINE Alu 1 329 0 270 82 20 0 chr11 85894524 85894573 -62888899 + (CAAAA)n Simple_repeat Simple_repeat 1 150 0 250 209 90 15 chr11 85895045 85895112 -62888360 - MER58A DNA MER1_type -3 221 150 380 258 31 10 chr11 85895136 85895233 -62888239 - MER58A DNA MER1_type -6 101 3 2754 218 45 7 chr11 85895567 85896174 -62887298 - MER82 DNA MER2_type -3 650 21 200 229 0 21 chr11 85896194 85896242 -62887230 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 379 333 86 11 chr11 85897088 85897274 -62886198 + MIR SINE MIR 57 256 -6 21 57 0 0 chr11 85897667 85897702 -62885770 + AT_rich Low_complexity Low_complexity 1 35 0 235 342 121 13 chr11 85897767 85897916 -62885556 + MER5A DNA MER1_type 16 180 -9 531 192 31 15 chr11 85898242 85898372 -62885100 + MER5A DNA MER1_type 58 189 0 842 288 47 0 chr11 85898525 85898761 -62884711 - MIR SINE MIR -3 259 13 216 335 13 57 chr11 85899344 85899502 -62883970 - MER5A DNA MER1_type -6 183 33 1326 155 4 13 chr11 85899679 85899905 -62883567 + Tigger3(Golem) DNA MER2_type 2806 3029 0 552 249 48 136 chr11 85900028 85900402 -62883070 - MLT1I LTR MaLR -1 408 68 414 253 143 33 chr11 85900884 85901066 -62882406 - MIR SINE MIR -12 250 49 315 267 95 9 chr11 85901557 85901662 -62881810 - L2 LINE L2 -1 3271 3158 243 381 84 44 chr11 85902069 85902436 -62881036 + L2 LINE L2 2891 3272 0 5582 35 0 6 chr11 85902552 85903230 -62880242 + L1PA3 LINE L1 5479 6152 -3 25 0 0 0 chr11 85905540 85905565 -62877907 + AT_rich Low_complexity Low_complexity 1 25 0 1084 241 13 4 chr11 85905749 85905986 -62877486 + Tigger5 DNA MER2_type 1 239 -2084 1377 143 17 4 chr11 85905987 85906218 -62877254 + Tigger5 DNA MER2_type 2090 2323 0 202 310 0 0 chr11 85906324 85906382 -62877090 - L2 LINE L2 -217 3055 2998 338 309 59 0 chr11 85906472 85906608 -62876864 + L2 LINE L2 2477 2620 -694 783 287 66 53 chr11 85906694 85907238 -62876234 - L1MC4 LINE L1 -146 7896 7346 822 92 0 0 chr11 85908156 85908286 -62875186 + (TAGA)n Simple_repeat Simple_repeat 3 132 0 287 373 68 0 chr11 85908472 85908590 -62874882 - MIR SINE MIR -124 138 13 671 289 58 18 chr11 85908734 85908959 -62874513 + MIR SINE MIR 28 261 -1 404 239 54 36 chr11 85910058 85910225 -62873247 - MER104 DNA Tc2 -1 179 10 23 0 0 0 chr11 85911463 85911486 -62871986 + AT_rich Low_complexity Low_complexity 1 23 0 284 271 0 0 chr11 85911854 85911939 -62871533 + MIR SINE MIR 177 261 -1 254 375 0 0 chr11 85912907 85912987 -62870485 + MIR SINE MIR 63 142 -120 450 350 100 14 chr11 85913705 85913925 -62869547 - MIR SINE MIR -4 258 20 356 203 13 0 chr11 85914045 85914124 -62869348 + MER116 DNA Mariner 1 80 0 322 377 50 5 chr11 85915115 85915335 -62868137 - MIR SINE MIR -20 242 13 397 282 44 44 chr11 85915553 85915734 -62867738 - MIR SINE MIR -61 201 21 208 352 88 0 chr11 85916172 85916263 -62867209 + MER5B DNA MER1_type 4 102 -76 1284 305 75 39 chr11 85916321 85916917 -62866555 + MLT2F LTR ERVL 3 620 -43 304 330 0 0 chr11 85916920 85917026 -62866446 + (TA)n Simple_repeat Simple_repeat 1 106 0 1371 164 112 18 chr11 85917026 85917312 -62866160 + MER7A DNA MER2_type 5 315 -31 2085 129 0 0 chr11 85917598 85917884 -62865588 - AluSx SINE Alu -7 305 20 12343 102 23 20 chr11 85918126 85919960 -62863512 + MER61C-int LTR ERV1 3370 5209 -8 2199 139 106 10 chr11 85919960 85920365 -62863107 + MER61C LTR ERV1 2 431 -3 218 238 48 48 chr11 85920391 85920475 -62862997 + MIR SINE MIR 179 262 0 195 129 0 0 chr11 85921554 85921585 -62861887 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 792 81 45 0 chr11 85921603 85921714 -62861758 - L1PA11 LINE L1 0 6174 6059 2226 90 20 8 chr11 85921719 85922118 -62861354 - LTR7 LTR ERV1 -2 448 1 3339 102 19 31 chr11 85922122 85922248 -62861224 - L1PA10 LINE L1 -113 6055 5930 975 256 46 39 chr11 85922248 85922686 -62860786 - L1MB4 LINE L1 -256 5924 5484 298 317 81 41 chr11 85922806 85923027 -62860445 + MIR SINE MIR 20 249 -13 227 326 126 26 chr11 85923448 85923638 -62859834 + L2 LINE L2 2843 3051 -221 195 270 32 0 chr11 85923695 85923758 -62859714 + L2 LINE L2 3208 3272 0 2254 121 0 6 chr11 85923965 85924279 -62859193 - AluSx SINE Alu 0 312 1 397 358 35 0 chr11 85924379 85924552 -62858920 - MIR SINE MIR 0 262 84 224 405 45 0 chr11 85925760 85925871 -62857601 - L2 LINE L2 -3 3269 3154 2095 175 160 95 chr11 85925876 85926652 -62856820 + LTR1B LTR ERV1 1 826 0 5516 59 211 76 chr11 85926682 85927715 -62855757 + MER11A LTR ERVK 1 1266 0 207 310 10 40 chr11 85927786 85927886 -62855586 - L2 LINE L2 -189 3083 2987 243 0 0 0 chr11 85928359 85928386 -62855086 + (A)n Simple_repeat Simple_repeat 1 27 0 2142 67 4 4 chr11 85929899 85930166 -62853306 + AluY SINE Alu 34 300 -11 306 353 65 18 chr11 85930652 85930930 -62852542 - L1ME4a LINE L1 -203 5918 5628 234 267 169 20 chr11 85931282 85931439 -62852033 - MIR SINE MIR -3 259 78 261 312 140 50 chr11 85933089 85933310 -62850162 - L2 LINE L2 -828 2486 2246 2060 92 50 0 chr11 85933434 85933715 -62849757 - AluSg SINE Alu -15 295 1 277 310 169 13 chr11 85935082 85935395 -62848077 + L2 LINE L2 2214 2575 -739 386 302 54 0 chr11 85935959 85936088 -62847384 + L3 LINE CR1 1343 1478 -99 284 236 11 0 chr11 85936930 85937019 -62846453 + (TTCA)n Simple_repeat Simple_repeat 3 92 0 778 121 128 14 chr11 85938423 85938564 -62844908 - AluSg/x SINE Alu 0 309 153 302 229 52 52 chr11 85938590 85938686 -62844786 - MIR SINE MIR -95 167 72 308 268 84 70 chr11 85938732 85938874 -62844598 - MIR SINE MIR -37 225 82 349 307 57 42 chr11 85938886 85939060 -62844412 - MIR SINE MIR -62 146 5 2492 52 0 10 chr11 85939107 85939414 -62844058 - AluY SINE Alu -7 304 1 1598 182 7 0 chr11 85939500 85939786 -62843686 - AluJb SINE Alu -24 288 1 267 330 54 0 chr11 85940226 85940338 -62843134 + MIR SINE MIR 95 212 -50 1303 223 70 40 chr11 85940379 85940850 -62842622 + Charlie4a DNA MER1_type 17 501 -7 199 292 56 0 chr11 85941430 85941502 -62841970 + MIR SINE MIR 97 172 -90 197 336 164 0 chr11 85941733 85941855 -62841617 + MIR SINE MIR 48 189 -73 370 284 55 0 chr11 85942301 85942410 -62841062 - MIR SINE MIR -91 171 57 22 0 0 0 chr11 85943336 85943358 -62840114 + AT_rich Low_complexity Low_complexity 1 22 0 258 81 0 0 chr11 85943621 85943658 -62839814 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 199 353 137 10 chr11 85943659 85943761 -62839711 - L2 LINE L2 -15 3298 3184 687 303 80 4 chr11 85944053 85944291 -62839181 - MIR SINE MIR -1 261 6 214 328 16 0 chr11 85944447 85944508 -62838964 - L2 LINE L2 -685 2629 2568 5426 94 15 9 chr11 85945845 85946655 -62836817 - L1PA10 LINE L1 -3 6165 5351 609 332 67 8 chr11 85947091 85947329 -62836143 + MIR SINE MIR 1 252 -10 185 362 14 0 chr11 85947347 85947416 -62836056 - L3 LINE CR1 -936 641 572 1669 165 38 32 chr11 85947472 85947841 -62835631 + THE1C LTR MaLR 5 375 0 2245 171 68 5 chr11 85947911 85948350 -62835122 + MLT1C LTR MaLR 1 467 0 21 36 0 0 chr11 85948563 85948591 -62834881 + AT_rich Low_complexity Low_complexity 1 28 0 233 204 0 0 chr11 85949794 85949838 -62833634 + CT-rich Low_complexity Low_complexity 1 44 0 2077 134 0 19 chr11 85950135 85950442 -62833030 - AluSx SINE Alu -7 305 5 408 357 56 26 chr11 85951230 85951496 -62831976 + MLT1J1 LTR MaLR 121 394 -52 2473 65 0 0 chr11 85952114 85952420 -62831052 - AluY SINE Alu -5 306 1 315 337 88 26 chr11 85954024 85954235 -62829237 + MIR3 SINE MIR 13 248 -14 21 57 0 0 chr11 85955826 85955861 -62827611 + AT_rich Low_complexity Low_complexity 1 35 0 1694 155 3 93 chr11 85956242 85956515 -62826957 - MER7A DNA MER2_type -2706 332 101 2358 71 0 3 chr11 85956515 85956809 -62826663 - AluY SINE Alu -18 293 1 1694 155 3 93 chr11 85956809 85956902 -62826570 - MER7A DNA MER2_type -2937 101 1 1364 222 24 47 chr11 85956951 85957334 -62826138 - MLT1A2 LTR MaLR 0 374 1 540 194 123 51 chr11 85957359 85957538 -62825934 - MLT1B LTR MaLR -188 186 1 36 77 0 0 chr11 85958117 85958195 -62825277 + AT_rich Low_complexity Low_complexity 1 78 0 261 313 0 0 chr11 85958513 85958609 -62824863 - L1MA9 LINE L1 -38 6274 6179 503 348 58 24 chr11 85958674 85958967 -62824505 + MER110-int LTR ERV1 2017 2319 -2328 2107 191 41 62 chr11 85959060 85959278 -62824194 + L1MB5 LINE L1 5641 5862 -312 1937 109 65 0 chr11 85959278 85959554 -62823918 + AluY SINE Alu 2 295 -16 2107 191 41 62 chr11 85959554 85959869 -62823603 + L1MB5 LINE L1 5862 6163 -11 774 321 37 40 chr11 85959871 85960273 -62823199 + MER110-int LTR ERV1 2388 2788 -1859 1124 298 81 68 chr11 85960657 85961490 -62821982 + L2 LINE L2 2283 3152 -161 187 328 33 16 chr11 85961532 85961593 -62821879 + L2 LINE L2 3184 3245 -27 1095 211 4 31 chr11 85963461 85963721 -62819751 - AluJo SINE Alu -1 311 59 221 163 0 23 chr11 85963772 85963815 -62819657 + (TG)n Simple_repeat Simple_repeat 2 43 0 861 101 114 0 chr11 85963930 85964088 -62819384 - L1P LINE L1 -739 5429 5254 4881 100 34 1 chr11 85964093 85964806 -62818666 + L1PA10 LINE L1 5433 6168 0 350 337 93 29 chr11 85965001 85965280 -62818192 - L1MC/D LINE L1 -2224 5561 5265 27 73 0 0 chr11 85965357 85965412 -62818060 + AT_rich Low_complexity Low_complexity 1 55 0 183 320 58 29 chr11 85965701 85965804 -62817668 + L2 LINE L2 2943 3048 -224 * 184 173 96 39 chr11 85965784 85965836 -62817636 - L3 LINE CR1 -293 1284 1230 695 148 0 0 chr11 85965983 85966098 -62817374 - AluSp/q SINE Alu -3 310 196 210 280 0 0 chr11 85966110 85966160 -62817312 + L2 LINE L2 3250 3299 -14 264 250 0 16 chr11 85967006 85967070 -62816402 - L2 LINE L2 -1 3312 3250 22 35 0 0 chr11 85967946 85967975 -62815497 + AT_rich Low_complexity Low_complexity 1 29 0 182 204 0 61 chr11 85968021 85968070 -62815402 + MIR SINE MIR 100 145 -117 1271 219 0 8 chr11 85968804 85969050 -62814422 + AluJb SINE Alu 1 244 -68 215 31 31 0 chr11 85969055 85969087 -62814385 + (CAA)n Simple_repeat Simple_repeat 2 34 0 228 398 11 11 chr11 85969168 85969261 -62814211 - MIR3 SINE MIR -110 98 6 2298 73 0 0 chr11 85969532 85969807 -62813665 + AluY SINE Alu 22 296 -15 267 279 16 33 chr11 85970474 85970596 -62812876 + MER94 DNA DNA 14 133 -1 349 339 6 36 chr11 85971450 85971618 -62811854 - MIR SINE MIR -87 175 13 204 40 0 0 chr11 85971808 85971833 -62811639 + (T)n Simple_repeat Simple_repeat 1 25 0 242 333 26 61 chr11 85972255 85972369 -62811103 + MIR SINE MIR 34 143 -119 1761 15 0 20 chr11 85972405 85972609 -62810863 + AluYa5 SINE Alu 107 306 -5 619 273 132 79 chr11 85972751 85973245 -62810227 - MLT2B1 LTR ERVL 0 520 1 196 349 28 28 chr11 85974217 85974323 -62809149 + MIR3 SINE MIR 72 177 -31 573 283 137 50 chr11 85974825 85975219 -62808253 - L1M4 LINE L1 -1745 4401 4043 1930 149 7 10 chr11 85975219 85975527 -62807945 - AluSx SINE Alu -5 307 1 573 283 137 50 chr11 85975527 85976089 -62807383 - L1M4 LINE L1 -2103 4043 3362 254 209 15 0 chr11 85977705 85977772 -62805700 + (TA)n Simple_repeat Simple_repeat 1 68 0 273 243 54 81 chr11 85978097 85978319 -62805153 - MER69 DNA AcHobo -3 2523 2308 37 52 0 0 chr11 85978327 85978385 -62805087 + AT_rich Low_complexity Low_complexity 1 58 0 24 67 0 0 chr11 85978401 85978446 -62805026 + AT_rich Low_complexity Low_complexity 1 45 0 1387 287 95 23 chr11 85978547 85979073 -62804399 - MER69 DNA AcHobo -1962 564 1 232 271 18 104 chr11 85981041 85981208 -62802264 + MIR SINE MIR 14 120 -88 191 321 117 41 chr11 85981705 85981901 -62801571 - L2 LINE L2 0 3313 3103 200 379 0 32 chr11 85983388 85983483 -62799989 + L2 LINE L2 3180 3271 -1 1286 204 67 25 chr11 85984016 85984301 -62799171 - AluJo SINE Alu -13 299 3 32 57 0 0 chr11 85984309 85984362 -62799110 + AT_rich Low_complexity Low_complexity 1 53 0 458 313 0 0 chr11 85986028 85986162 -62797310 - MIR SINE MIR -31 231 98 22 0 0 0 chr11 85986757 85986779 -62796693 + AT_rich Low_complexity Low_complexity 1 22 0 325 308 88 16 chr11 85987045 85987227 -62796245 - MIR SINE MIR -49 213 19 239 372 39 13 chr11 85987881 85988037 -62795435 - L2 LINE L2 -431 2883 2724 297 212 301 18 chr11 85988422 85988535 -62794937 - MIR SINE MIR -105 157 13 21 36 0 0 chr11 85988643 85988671 -62794801 + AT_rich Low_complexity Low_complexity 1 28 0 760 237 0 71 chr11 85989827 85990038 -62793434 + AluJo SINE Alu 86 281 -31 1247 166 49 86 chr11 85990115 85990543 -62792929 - Charlie1 DNA MER1_type 0 2761 2350 703 213 34 58 chr11 85991500 85991707 -62791765 + MER3 DNA MER1_type 8 209 0 2203 115 0 3 chr11 85991708 85992012 -62791460 - AluSp SINE Alu -10 303 1 4750 178 14 11 chr11 85992539 85993517 -62789955 - L1MB1 LINE L1 -1 6167 5184 2202 126 3 0 chr11 85993517 85993819 -62789653 - AluSx SINE Alu -9 303 1 4750 178 14 11 chr11 85993819 85994081 -62789391 - L1MB1 LINE L1 -984 5184 4924 273 261 60 8 chr11 85994612 85994746 -62788726 + L1ME LINE L1 5709 5849 -272 28 0 0 0 chr11 85994746 85994774 -62788698 + AT_rich Low_complexity Low_complexity 1 28 0 2205 107 3 3 chr11 85994855 85995153 -62788319 + AluSx SINE Alu 1 298 -14 38 22 0 0 chr11 85995282 85995327 -62788145 + AT_rich Low_complexity Low_complexity 1 45 0 1407 190 95 7 chr11 85995518 85995802 -62787670 - AluJo SINE Alu -3 309 1 2145 125 0 0 chr11 85996175 85996471 -62787001 + AluSg SINE Alu 1 296 -14 21 36 0 0 chr11 85996828 85996856 -62786616 + AT_rich Low_complexity Low_complexity 1 28 0 2363 76 0 13 chr11 85997382 85997696 -62785776 - AluY SINE Alu -1 310 1 197 33 33 0 chr11 85997857 85997887 -62785585 + (TAA)n Simple_repeat Simple_repeat 1 31 0 233 297 69 41 chr11 85998614 85998759 -62784713 + L2 LINE L2 2710 2858 -456 6838 59 10 2 chr11 85999677 86000651 -62782821 + L1PA7 LINE L1 5172 6152 -2 3862 86 16 0 chr11 86000999 86001544 -62781928 - MER41A LTR ERV1 0 554 1 967 180 77 10 chr11 86001579 86001773 -62781699 - MER6B DNA MER2_type -3 207 1 324 280 10 10 chr11 86002144 86002244 -62781228 + L1MC4 LINE L1 6604 6703 -1339 * 361 258 0 11 chr11 86002163 86002252 -62781220 - L1MC4 LINE L1 -1341 6701 6614 252 146 0 36 chr11 86002256 86002311 -62781161 - L1MC4 LINE L1 -1339 6703 6651 28 0 0 0 chr11 86003103 86003131 -62780341 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr11 86003486 86003514 -62779958 + AT_rich Low_complexity Low_complexity 1 28 0 498 119 22 172 chr11 86004659 86004793 -62778679 - L1PB4 LINE L1 -6 6150 6037 301 416 62 22 chr11 86005057 86005283 -62778189 + L2 LINE L2 2828 3062 -210 213 307 93 0 chr11 86005542 86005617 -62777855 + MIR SINE MIR 7 88 -174 181 350 66 76 chr11 86005605 86006093 -62777379 - L2 LINE L2 -2747 567 85 * 283 233 50 100 chr11 86006519 86006576 -62776896 + MER5A DNA MER1_type 17 66 -123 2030 129 17 0 chr11 86006576 86006871 -62776601 + AluSp SINE Alu 1 300 -13 283 233 50 100 chr11 86006871 86006933 -62776539 + MER5A DNA MER1_type 66 130 -59 296 335 62 11 chr11 86007086 86007262 -62776210 - L3 LINE CR1 -58 1519 1335 424 313 34 29 chr11 86008510 86008718 -62774754 - L1MC4 LINE L1 -2036 5772 5564 3571 149 87 45 chr11 86009315 86010288 -62773184 - LTR12 LTR ERV1 0 2438 31 201 308 39 70 chr11 86011330 86011486 -62771986 - MIR SINE MIR -46 216 66 * 244 278 23 108 chr11 86011485 86011661 -62771811 - MIR3 SINE MIR -18 190 30 1994 152 10 0 chr11 86011920 86012229 -62771243 - AluSx SINE Alu 0 312 1 225 361 61 33 chr11 86012514 86012727 -62770745 - MIR SINE MIR 0 262 44 1782 171 10 13 chr11 86013656 86013965 -62769507 + AluSx SINE Alu 1 308 -4 180 383 43 31 chr11 86014192 86014354 -62769118 + MER5B DNA MER1_type 15 178 0 245 298 73 40 chr11 86014203 86014327 -62769145 - MER5A DNA MER1_type -23 166 39 331 164 47 141 chr11 86014663 86014791 -62768681 + MLT1H LTR MaLR 434 549 0 204 381 60 28 chr11 86014842 86015016 -62768456 + MIR SINE MIR 3 189 -73 510 69 0 92 chr11 86015016 86015103 -62768369 + MADE1 DNA Mariner 1 79 -1 204 381 60 28 chr11 86015103 86015177 -62768295 + MIR SINE MIR 189 259 -3 288 333 43 37 chr11 86015188 86015350 -62768122 - MIR SINE MIR -25 237 75 767 250 80 5 chr11 86015585 86015785 -62767687 - L1 LINE L1 -982 5164 4950 628 191 6 27 chr11 86015787 86015970 -62767502 + CT-rich Low_complexity Low_complexity 2 180 0 204 216 0 59 chr11 86015970 86016021 -62767451 + polypyrimidine Low_complexity Low_complexity 2 49 0 3316 207 28 38 chr11 86016025 86016924 -62766548 - L1 LINE L1 -1193 4953 4064 1776 201 53 34 chr11 86016920 86017855 -62765617 + L1MA10 LINE L1 5159 6299 -35 * 25 51 0 0 chr11 86017902 86017941 -62765531 + AT_rich Low_complexity Low_complexity 1 39 0 474 301 56 25 chr11 86018068 86018264 -62765208 + MIR SINE MIR 2 203 -59 214 368 0 0 chr11 86018924 86019000 -62764472 + L2 LINE L2 3199 3274 -39 826 255 90 135 chr11 86019014 86019672 -62763800 + MLT2E LTR ERVL 1 628 0 626 335 114 21 chr11 86020558 86020979 -62762493 + MLT1G1 LTR MaLR 112 571 -24 315 337 34 46 chr11 86021192 86021367 -62762105 + MIR SINE MIR 41 213 -49 234 105 0 0 chr11 86021655 86021693 -62761779 + (CA)n Simple_repeat Simple_repeat 2 39 0 192 125 0 0 chr11 86021966 86021998 -62761474 + (TTTTA)n Simple_repeat Simple_repeat 3 34 0 586 289 22 70 chr11 86022385 86022658 -62760814 + MIR SINE MIR 2 261 -1 406 286 19 0 chr11 86022768 86022873 -62760599 - MER5A DNA MER1_type -77 112 6 23 33 0 0 chr11 86023353 86023383 -62760089 + AT_rich Low_complexity Low_complexity 1 30 0 458 338 45 68 chr11 86024163 86024559 -62758913 + L2 LINE L2 2927 3313 0 5614 178 18 23 chr11 86026010 86027646 -62755826 + L1PB4 LINE L1 4165 5793 -363 270 0 0 0 chr11 86027646 86027676 -62755796 + (CA)n Simple_repeat Simple_repeat 2 31 0 5614 178 18 23 chr11 86027676 86028039 -62755433 + L1PB4 LINE L1 5793 6156 0 298 321 55 36 chr11 86028356 86028521 -62754951 + L2 LINE L2 2590 2757 -557 2278 102 3 6 chr11 86028544 86028858 -62754614 + AluSp SINE Alu 1 313 0 359 384 158 20 chr11 86028931 86029223 -62754249 + L2 LINE L2 2914 3245 -27 216 381 0 17 chr11 86029483 86029601 -62753871 - MIR SINE MIR -65 197 82 530 136 59 0 chr11 86029828 86029997 -62753475 + (TA)n Simple_repeat Simple_repeat 2 180 0 2740 110 20 10 chr11 86029997 86030397 -62753075 - MLT2A1 LTR ERVL -40 404 1 1189 216 26 4 chr11 86030555 86030787 -62752685 - MER8 DNA MER2_type -1 238 2 279 275 56 67 chr11 86032447 86032625 -62750847 + MIR SINE MIR 1 176 -86 387 0 0 0 chr11 86032638 86032681 -62750791 + (TG)n Simple_repeat Simple_repeat 2 44 0 431 319 145 10 chr11 86032801 86033008 -62750464 + MIR SINE MIR 14 248 -14 330 26 0 0 chr11 86033019 86033058 -62750414 + (CAT)n Simple_repeat Simple_repeat 2 40 0 202 200 100 40 chr11 86033114 86033164 -62750308 - L2 LINE L2 -31 3282 3230 219 359 75 0 chr11 86033596 86033702 -62749770 - MIR SINE MIR -79 129 16 2332 54 0 0 chr11 86034381 86034661 -62748811 - AluY SINE Alu 0 311 32 1242 237 44 24 chr11 86034929 86035405 -62748067 - Charlie1b DNA MER1_type 0 523 7 180 250 261 0 chr11 86038373 86038465 -62745007 - MIR SINE MIR -3 259 144 333 240 0 0 chr11 86038618 86038693 -62744779 - L2 LINE L2 0 3313 3239 210 250 73 118 chr11 86039235 86039371 -62744101 + MIR SINE MIR 77 206 -56 361 358 6 18 chr11 86039736 86039901 -62743571 - MIR3 SINE MIR -15 193 31 256 347 48 32 chr11 86040055 86040388 -62743084 - L3 LINE CR1 -859 718 324 395 372 94 36 chr11 86042443 86043190 -62740282 + L2 LINE L2 2434 3230 -42 22 0 0 0 chr11 86043209 86043231 -62740241 + AT_rich Low_complexity Low_complexity 1 22 0 669 267 11 0 chr11 86044345 86044521 -62738951 - MER5B DNA MER1_type 0 178 1 196 308 108 46 chr11 86044694 86044824 -62738648 + L2 LINE L2 2766 2903 -411 2132 283 67 37 chr11 86044840 86046739 -62736733 - L1MEc LINE L1 -2256 3959 2039 694 243 7 0 chr11 86047093 86047245 -62736227 + MSTD LTR MaLR 1 153 -243 833 100 8 0 chr11 86047333 86047453 -62736019 + FRAM SINE Alu 47 167 -9 288 0 0 0 chr11 86047888 86047920 -62735552 + (TG)n Simple_repeat Simple_repeat 2 33 0 1144 284 97 20 chr11 86048680 86049187 -62734285 + MLT1H LTR MaLR 1 546 -3 378 260 68 14 chr11 86049348 86049494 -62733978 + Charlie4a DNA MER1_type 203 356 -152 5503 50 0 1 chr11 86050187 86050868 -62732604 + L1PA7 LINE L1 5471 6150 -4 315 291 57 69 chr11 86050868 86051043 -62732429 + MLT1J1 LTR MaLR 1 173 -273 24 0 0 0 chr11 86051072 86051096 -62732376 + AT_rich Low_complexity Low_complexity 1 24 0 1869 90 0 4 chr11 86052239 86052495 -62730977 - L1PA8 LINE L1 -9 6163 5909 386 133 0 0 chr11 86052495 86052555 -62730917 + L1P LINE L1 5204 5263 -883 837 224 136 24 chr11 86052922 86053346 -62730126 + MLT1E3 LTR MaLR 69 624 0 25 0 0 0 chr11 86054524 86054549 -62728923 + AT_rich Low_complexity Low_complexity 1 25 0 431 291 60 40 chr11 86054764 86054963 -62728509 + MIR SINE MIR 55 257 -5 180 217 0 0 chr11 86054966 86055012 -62728460 + (ATG)n Simple_repeat Simple_repeat 2 47 0 302 301 40 106 chr11 86055665 86055967 -62727505 - L2 LINE L2 -2 3270 2989 1764 209 61 18 chr11 86056613 86057026 -62726446 - Charlie1b DNA MER1_type -2249 512 73 2374 74 0 10 chr11 86057026 86057337 -62726135 + AluY SINE Alu 1 308 -3 1764 209 61 18 chr11 86057337 86057412 -62726060 - Charlie1b DNA MER1_type -2688 73 3 800 186 35 145 chr11 86057414 86057780 -62725692 + LTR37B LTR ERV1 113 438 -30 3044 177 52 9 chr11 86057797 86058287 -62725185 - L1MA9 LINE L1 -8 6304 5778 330 26 0 0 chr11 86058287 86058326 -62725146 + (TG)n Simple_repeat Simple_repeat 2 40 0 3044 177 52 9 chr11 86058326 86058490 -62724982 - L1MA9 LINE L1 -534 5778 5622 1670 169 7 3 chr11 86058525 86058809 -62724663 + AluJb SINE Alu 1 285 -27 212 200 56 0 chr11 86058816 86058906 -62724566 + (TA)n Simple_repeat Simple_repeat 1 95 0 280 229 57 14 chr11 86058946 86059016 -62724456 - MIR SINE MIR -64 144 72 22 0 0 0 chr11 86059599 86059621 -62723851 + AT_rich Low_complexity Low_complexity 1 22 0 222 267 33 0 chr11 86059924 86059984 -62723488 + MER5A DNA MER1_type 49 110 -79 248 220 0 0 chr11 86060478 86060528 -62722944 + GA-rich Low_complexity Low_complexity 3 52 0 370 319 141 11 chr11 86060617 86060802 -62722670 + MIR SINE MIR 54 262 0 246 385 21 0 chr11 86061430 86061526 -62721946 + MIR SINE MIR 47 144 -64 706 294 15 5 chr11 86061794 86061998 -62721474 + MIR SINE MIR 18 223 -39 180 0 0 0 chr11 86062019 86062039 -62721433 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 316 277 65 103 chr11 86062954 86063138 -62720334 - MER5B DNA MER1_type 0 178 2 2196 95 0 0 chr11 86063335 86063639 -62719833 + AluY SINE Alu 1 304 -7 203 308 17 8 chr11 86063644 86063764 -62719708 + (TTCA)n Simple_repeat Simple_repeat 1 121 0 696 270 162 5 chr11 86064234 86064456 -62719016 + MIR SINE MIR 5 261 -1 22 0 0 0 chr11 86065095 86065117 -62718355 + AT_rich Low_complexity Low_complexity 1 22 0 183 339 0 15 chr11 86065663 86065728 -62717744 + L2 LINE L2 3249 3312 -1 299 327 60 73 chr11 86066059 86066209 -62717263 - L2 LINE L2 0 3272 3125 2324 175 29 7 chr11 86068803 86069220 -62714252 - MSTB LTR MaLR 0 426 1 321 122 0 0 chr11 86069328 86069377 -62714095 - FLAM_A SINE Alu 0 133 85 985 173 49 0 chr11 86069377 86069465 -62714007 - AluJo SINE Alu -92 220 138 396 0 0 0 chr11 86069465 86069509 -62713963 + (TTA)n Simple_repeat Simple_repeat 2 45 0 985 173 49 0 chr11 86069509 86069605 -62713867 - AluJo SINE Alu -174 138 27 235 279 47 31 chr11 86069936 86070065 -62713407 + MER87 LTR ERV1 399 529 -12 1980 178 73 23 chr11 86070237 86070664 -62712808 + LOR1b LTR ERV1 14 461 0 233 250 171 0 chr11 86071451 86071527 -62711945 + MIR3 SINE MIR 94 182 -26 196 352 83 9 chr11 86073238 86073346 -62710126 - L3 LINE CR1 -1155 422 307 22 0 0 0 chr11 86073552 86073574 -62709898 + AT_rich Low_complexity Low_complexity 1 22 0 1835 290 31 21 chr11 86073663 86074249 -62709223 + MLT1E2 LTR MaLR 1 595 -31 6140 148 74 13 chr11 86074249 86074715 -62708757 - Tigger3b DNA MER2_type -1797 1231 795 2578 3 0 0 chr11 86074715 86075044 -62708428 - AluYa5 SINE Alu 0 329 1 6140 148 74 13 chr11 86075044 86075735 -62707737 - Tigger3b DNA MER2_type -2233 795 2 1835 290 31 21 chr11 86075735 86075768 -62707704 + MLT1E2 LTR MaLR 595 626 0 202 210 113 65 chr11 86075772 86075834 -62707638 - MIR SINE MIR -63 145 81 197 319 21 0 chr11 86076010 86076057 -62707415 - L2 LINE L2 -15 3257 3210 210 37 0 0 chr11 86076143 86076170 -62707302 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 888 156 7 0 chr11 86076170 86076305 -62707167 - AluJo/FRAM SINE Alu -29 283 148 495 206 21 0 chr11 86076305 86076402 -62707070 - AluJ/FLAM SINE Alu -213 99 1 453 338 54 33 chr11 86076575 86076815 -62706657 - MIR SINE MIR 0 262 18 717 277 35 0 chr11 86077427 86077629 -62705843 - MER6B DNA MER2_type -1 209 1 912 190 0 0 chr11 86077711 86077874 -62705598 - FRAM SINE Alu -16 160 1 232 301 41 0 chr11 86077940 86078013 -62705459 - MIR SINE MIR -95 167 92 1819 144 14 0 chr11 86078029 86078307 -62705165 + AluSx SINE Alu 1 282 -30 248 322 75 10 chr11 86078591 86078759 -62704713 - MIR SINE MIR -60 202 26 1019 120 69 0 chr11 86080197 86080372 -62703100 + L1MA5A LINE L1 6111 6297 0 226 337 59 0 chr11 86081927 86082028 -62701444 + MIR SINE MIR 65 171 -91 2229 137 25 6 chr11 86082028 86082385 -62701087 - THE1B LTR MaLR 0 364 1 267 250 0 16 chr11 86083306 86083370 -62700102 - L2 LINE L2 -1 3312 3250 22 35 0 0 chr11 86084246 86084275 -62699197 + AT_rich Low_complexity Low_complexity 1 29 0 186 204 0 61 chr11 86084321 86084370 -62699102 + MIR SINE MIR 100 145 -117 1244 219 0 8 chr11 86085104 86085350 -62698122 + AluJb SINE Alu 1 244 -68 215 31 31 0 chr11 86085355 86085387 -62698085 + (CAA)n Simple_repeat Simple_repeat 2 34 0 229 398 11 11 chr11 86085468 86085561 -62697911 - MIR3 SINE MIR -110 98 6 2098 85 0 0 chr11 86085832 86086092 -62697380 + AluY SINE Alu 22 281 -30 248 322 75 10 chr11 86086376 86086544 -62696928 - MIR SINE MIR -60 202 26 1019 120 69 0 chr11 86087983 86088158 -62695314 + L1MA5A LINE L1 6111 6297 0 226 337 59 0 chr11 86089713 86089814 -62693658 + MIR SINE MIR 65 171 -91 2229 137 25 6 chr11 86089814 86090171 -62693301 - THE1B LTR MaLR 0 364 1 1001 219 62 0 chr11 86090697 86090827 -62692645 + L1MA9 LINE L1 6017 6138 -174 222 91 0 0 chr11 86090827 86090860 -62692612 + (CA)n Simple_repeat Simple_repeat 2 34 0 1001 219 62 0 chr11 86090860 86090971 -62692501 + L1MA9 LINE L1 6138 6273 -39 507 168 0 0 chr11 86091071 86091190 -62692282 + (TAGA)n Simple_repeat Simple_repeat 2 120 0 196 350 68 0 chr11 86091367 86091484 -62691988 - MIR SINE MIR -12 250 126 477 330 109 0 chr11 86091708 86091929 -62691543 + MIR SINE MIR 12 256 -6 4542 149 24 39 chr11 86092910 86093904 -62689568 - MER11C LTR ERVK -4 1067 1 292 269 15 0 chr11 86094621 86094688 -62688784 + MER3 DNA MER1_type 46 113 -96 656 214 113 4 chr11 86094789 86095027 -62688445 + MER3 DNA MER1_type 2360 2623 0 1520 43 0 0 chr11 86095251 86095438 -62688034 + L1PA4 LINE L1 5966 6152 -3 364 370 37 22 chr11 86095658 86095988 -62687484 - L2 LINE L2 -220 3052 2719 293 293 53 68 chr11 86096167 86096300 -62687172 + L2 LINE L2 3123 3253 -19 294 29 0 0 chr11 86096309 86096344 -62687128 + (TG)n Simple_repeat Simple_repeat 2 36 0 24 0 0 0 chr11 86097281 86097305 -62686167 + AT_rich Low_complexity Low_complexity 1 24 0 279 270 70 40 chr11 86098302 86098402 -62685070 + MIR SINE MIR 79 181 -81 239 343 14 0 chr11 86099077 86099150 -62684322 + L2 LINE L2 3233 3306 -7 213 171 24 0 chr11 86099298 86099339 -62684133 + MIR SINE MIR 68 109 -153 1167 232 37 66 chr11 86099353 86099733 -62683739 + MLT1A2 LTR MaLR 2 370 -4 2178 154 53 24 chr11 86100016 86100432 -62683040 - MSTA LTR MaLR 0 428 1 195 42 0 0 chr11 86100677 86100701 -62682771 + (TAA)n Simple_repeat Simple_repeat 1 24 0 458 159 26 9 chr11 86101528 86101641 -62681831 + CT-rich Low_complexity Low_complexity 3 117 0 185 280 237 0 chr11 86102339 86102432 -62681040 - L2 LINE L2 0 3313 3199 358 288 33 52 chr11 86102556 86102709 -62680763 - L2 LINE L2 -221 3051 2902 353 338 167 23 chr11 86103367 86103799 -62679673 - L2 LINE L2 0 3313 2820 2644 38 0 13 chr11 86103898 86104212 -62679260 + AluY SINE Alu 1 310 -1 225 0 0 0 chr11 86104331 86104356 -62679116 + (T)n Simple_repeat Simple_repeat 1 25 0 245 333 26 61 chr11 86104778 86104892 -62678580 + MIR SINE MIR 34 143 -119 1664 20 0 20 chr11 86104928 86105123 -62678349 + AluY SINE Alu 107 297 -14 870 254 30 37 chr11 86105123 86105418 -62678054 - L2 LINE L2 -618 2696 2404 345 47 0 0 chr11 86105842 86105885 -62677587 + (GA)n Simple_repeat Simple_repeat 2 44 0 1313 216 40 19 chr11 86105889 86106269 -62677203 + MER54B LTR ERVL 498 792 -1 6651 55 15 31 chr11 86106471 86107546 -62675926 + L1PA6 LINE L1 5093 6154 0 204 302 60 35 chr11 86107603 86107719 -62675753 + MIR SINE MIR 89 207 -55 189 237 0 0 chr11 86107777 86107836 -62675636 + (CATA)n Simple_repeat Simple_repeat 2 60 0 188 139 0 23 chr11 86108208 86108251 -62675221 + (TTTTC)n Simple_repeat Simple_repeat 2 43 0 656 282 54 54 chr11 86108455 86108968 -62674504 + L2 LINE L2 2740 3252 -61 1397 142 168 32 chr11 86108968 86109278 -62674194 + MSTA LTR MaLR 1 352 -76 189 0 0 0 chr11 86109279 86109300 -62674172 + (T)n Simple_repeat Simple_repeat 1 21 0 491 33 0 0 chr11 86109400 86109461 -62674011 + MSTA LTR MaLR 368 428 0 322 237 0 0 chr11 86109462 86109521 -62673951 + L2 LINE L2 3208 3266 -6 224 334 20 60 chr11 86110376 86110526 -62672946 - MIR SINE MIR -63 145 8 24 0 0 0 chr11 86111120 86111144 -62672328 + AT_rich Low_complexity Low_complexity 1 24 0 275 289 12 12 chr11 86111210 86111293 -62672179 + MIR SINE MIR 31 113 -95 473 281 106 32 chr11 86111420 86111637 -62671835 + MIR SINE MIR 20 252 -10 201 355 65 32 chr11 86111711 86111835 -62671637 + MIR SINE MIR 59 186 -76 243 0 0 0 chr11 86112313 86112340 -62671132 + (T)n Simple_repeat Simple_repeat 1 27 0 214 292 0 21 chr11 86112510 86112558 -62670914 - MIR SINE MIR -208 54 8 275 49 24 0 chr11 86113274 86113315 -62670157 + (TC)n Simple_repeat Simple_repeat 1 42 0 574 320 60 45 chr11 86114312 86114665 -62668807 + L2 LINE L2 2620 2977 -337 1122 171 14 0 chr11 86114836 86115047 -62668425 + Tigger1 DNA MER2_type 1771 1984 -434 1749 173 45 28 chr11 86115047 86115470 -62668002 - LTR23 LTR ERV1 0 437 8 2100 166 40 9 chr11 86115475 86115897 -62667575 + Tigger1 DNA MER2_type 1982 2416 -2 241 381 0 0 chr11 86115901 86115985 -62667487 + L2 LINE L2 3223 3306 -7 2039 143 0 0 chr11 86115985 86116278 -62667194 + AluSg SINE Alu 1 293 -17 230 245 0 0 chr11 86116331 86116384 -62667088 + MLT1K LTR MaLR 523 575 -13 2273 139 88 8 chr11 86116885 86117281 -62666191 + MSTA LTR MaLR 1 428 0 681 266 66 66 chr11 86117417 86117682 -62665790 + MLT1J LTR MaLR 1 268 -243 2186 135 119 8 chr11 86117682 86118067 -62665405 + MSTA LTR MaLR 1 428 0 681 266 66 66 chr11 86118067 86118268 -62665204 + MLT1J LTR MaLR 267 467 -44 201 286 0 18 chr11 86118556 86118612 -62664860 - L2 LINE L2 -95 3177 3123 2024 156 3 3 chr11 86118694 86119028 -62664444 - MER83C-int LTR ERV1 -22 4858 4525 1798 189 0 3 chr11 86119084 86119390 -62664082 + AluJb SINE Alu 3 307 -5 595 297 17 8 chr11 86119396 86119635 -62663837 - MER83C-int LTR ERV1 -3529 1425 1185 3364 248 47 23 chr11 86119812 86120511 -62662961 - MER83C-int LTR ERV1 -3872 1008 531 1892 136 0 4 chr11 86120511 86120826 -62662646 + AluSx SINE Alu 13 326 0 3364 248 47 23 chr11 86120826 86121326 -62662146 - MER83C-int LTR ERV1 -4349 531 44 1925 192 17 3 chr11 86121340 86121700 -62661772 - MER83C LTR ERV1 -4 369 5 21 0 0 0 chr11 86122336 86122357 -62661115 + AT_rich Low_complexity Low_complexity 1 21 0 231 355 77 41 chr11 86122822 86123042 -62660430 + MIR SINE MIR 29 256 -6 29 28 0 0 chr11 86123659 86123695 -62659777 + AT_rich Low_complexity Low_complexity 1 36 0 235 380 60 20 chr11 86123851 86124001 -62659471 + L2 LINE L2 3087 3242 -30 268 214 60 0 chr11 86124097 86124181 -62659291 - MER53 DNA DNA 0 189 101 237 396 25 15 chr11 86124840 86125042 -62658430 - L3 LINE CR1 -132 1445 1242 327 358 58 8 chr11 86125149 86125269 -62658203 + L2 LINE L2 3147 3272 0 324 269 25 42 chr11 86125370 86125489 -62657983 - L2 LINE L2 0 3272 3156 548 168 296 0 chr11 86125607 86125732 -62657740 - FRAM SINE Alu -18 158 1 230 140 0 20 chr11 86176160 86176210 -62607262 + L1MCa LINE L1 2016 2064 -4362 1056 133 0 0 chr11 86176218 86176398 -62607074 + (TA)n Simple_repeat Simple_repeat 1 180 0 252 167 0 17 chr11 86176400 86176460 -62607012 + L1MCa LINE L1 2006 2064 -4362 201 121 0 0 chr11 86176460 86176493 -62606979 + (TA)n Simple_repeat Simple_repeat 1 33 0 234 156 0 0 chr11 86176493 86176538 -62606934 - LTR66 LTR ERVL -171 439 395 327 172 11 21 chr11 86176545 86176638 -62606834 + (TA)n Simple_repeat Simple_repeat 2 93 0 493 236 57 35 chr11 86176696 86176967 -62606505 + L1ME3 LINE L1 5260 5528 -636 342 45 0 0 chr11 86177014 86177058 -62606414 + (TC)n Simple_repeat Simple_repeat 1 44 0 1473 256 92 39 chr11 86177061 86177648 -62605824 + L1ME3 LINE L1 5538 6155 -7 185 257 0 0 chr11 86177759 86177794 -62605678 - MIR3 SINE MIR -21 187 153 345 342 16 57 chr11 86177795 86177988 -62605484 + MER5A DNA MER1_type 2 186 -3 340 324 66 16 chr11 86178127 86178309 -62605163 - MIR SINE MIR -71 191 1 14215 188 16 14 chr11 86178408 86182364 -62601108 - L1PA14 LINE L1 0 6161 2197 2096 128 7 0 chr11 86182746 86183131 -62600341 + AluSx SINE Alu 11 397 0 279 275 117 8 chr11 86183293 86183413 -62600059 - MIR SINE MIR -15 247 115 184 343 188 10 chr11 86183685 86183892 -62599580 - MIR SINE MIR -10 252 9 408 319 141 12 chr11 86184568 86184827 -62598645 + L2 LINE L2 2702 2992 -321 405 0 0 0 chr11 86185444 86185489 -62597983 + (CA)n Simple_repeat Simple_repeat 2 46 0 2802 173 69 0 chr11 86186107 86186615 -62596857 + Tigger3b DNA MER2_type 1 543 -688 1048 269 15 45 chr11 86186607 86186942 -62596530 + MLT1C LTR MaLR 143 467 0 * 548 300 83 16 chr11 86187056 86187309 -62596163 + L2 LINE L2 2944 3213 -100 43541 42 5 0 chr11 86187614 86193737 -62589735 - L1PA4 LINE L1 -8 6147 1 2104 111 7 0 chr11 86194317 86194614 -62588858 - AluY SINE Alu -12 299 1 477 118 26 0 chr11 86195866 86195942 -62587530 + MADE1 DNA Mariner 2 79 -1 306 279 25 0 chr11 86196402 86196481 -62586991 - MIR SINE MIR -126 136 56 1921 158 17 54 chr11 86197178 86197583 -62585889 + MLT1B LTR MaLR 1 390 0 31 44 0 0 chr11 86197691 86197736 -62585736 + AT_rich Low_complexity Low_complexity 1 45 0 888 234 20 0 chr11 86198066 86198263 -62585209 - MER3 DNA MER1_type -3 206 6 359 329 101 6 chr11 86198271 86198429 -62585043 + MIR SINE MIR 35 207 -55 247 352 62 23 chr11 86199018 86199146 -62584326 + L2 LINE L2 3138 3270 -2 518 341 33 14 chr11 86199440 86199654 -62583818 - MIR SINE MIR -23 239 22 257 296 62 0 chr11 86200858 86200939 -62582533 - L2 LINE L2 -14 3258 3173 34 24 0 0 chr11 86201072 86201113 -62582359 + AT_rich Low_complexity Low_complexity 1 41 0 538 342 62 25 chr11 86201434 86201674 -62581798 + MER115 DNA AcHobo 133 381 -312 543 349 38 4 chr11 86201706 86201941 -62581531 + MER115 DNA AcHobo 451 693 0 1988 231 16 36 chr11 86202111 86202612 -62580860 + MLT1D LTR MaLR 15 505 0 363 241 62 18 chr11 86203147 86203259 -62580213 + MER103 DNA DNA 48 164 -2 200 343 126 42 chr11 86203704 86203847 -62579625 - MIR3 SINE MIR -21 187 33 3082 159 18 7 chr11 86203934 86204831 -62578641 + L1PB4 LINE L1 4885 5792 -364 183 162 0 0 chr11 86204831 86204868 -62578604 + (CA)n Simple_repeat Simple_repeat 2 38 0 28 29 0 0 chr11 86205657 86205692 -62577780 + AT_rich Low_complexity Low_complexity 1 35 0 32 0 0 0 chr11 86210675 86210707 -62572765 + AT_rich Low_complexity Low_complexity 1 32 0 2527 110 5 3 chr11 86210741 86211113 -62572359 + L1PB4 LINE L1 5782 6154 -2 781 166 0 51 chr11 86211126 86211283 -62572189 - Tigger3(Golem) DNA MER2_type -2738 291 143 240 317 67 33 chr11 86211576 86211696 -62571776 - L2 LINE L2 -18 3295 3172 216 411 0 0 chr11 86212067 86212140 -62571332 + L2 LINE L2 3196 3268 -4 270 209 88 88 chr11 86212283 86212374 -62571098 + MIR SINE MIR 38 128 -80 335 318 18 9 chr11 86212835 86212945 -62570527 + LTR16C LTR ERVL 380 490 -1 270 408 48 0 chr11 86213552 86213677 -62569795 - L2 LINE L2 -26 3246 3116 3742 197 45 65 chr11 86213959 86214299 -62569173 + L1MC2 LINE L1 5323 5668 -676 990 191 148 34 chr11 86214299 86214623 -62568849 - MLT1A1 LTR MaLR 0 365 5 3742 197 45 65 chr11 86214623 86215297 -62568175 + L1MC2 LINE L1 5668 6317 -27 196 327 194 12 chr11 86215525 86215690 -62567782 - MIR SINE MIR -45 217 23 24 0 0 0 chr11 86216102 86216126 -62567346 + AT_rich Low_complexity Low_complexity 1 24 0 582 196 0 0 chr11 86216530 86216632 -62566840 - FLAM_A SINE Alu -5 137 36 1983 85 53 7 chr11 86216641 86216923 -62566549 - AluSc SINE Alu -14 295 1 196 336 76 23 chr11 86217714 86217845 -62565627 - L2 LINE L2 -324 2989 2852 212 330 43 26 chr11 86219679 86219794 -62563678 - MER5A DNA MER1_type -1 188 72 260 360 91 26 chr11 86219991 86220444 -62563028 - L3 LINE CR1 -856 721 240 5126 174 19 16 chr11 86220566 86221497 -62561975 + MSTA-int LTR MaLR 647 1580 0 2019 154 118 18 chr11 86221497 86221665 -62561807 + MSTA LTR MaLR 1 151 -277 233 29 29 0 chr11 86221665 86221699 -62561773 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2019 154 118 18 chr11 86221699 86221919 -62561553 + MSTA LTR MaLR 151 428 0 2694 137 12 53 chr11 86221919 86222499 -62560973 + L1MA7 LINE L1 5614 6145 -146 1895 195 63 22 chr11 86224023 86224434 -62559038 - MSTC LTR MaLR 0 428 1 208 274 0 27 chr11 86224691 86224764 -62558708 + CT-rich Low_complexity Low_complexity 3 73 0 1756 164 0 3 chr11 86225343 86225659 -62557813 + AluSx SINE Alu 1 315 0 22 0 0 0 chr11 86225719 86225741 -62557731 + AT_rich Low_complexity Low_complexity 1 22 0 589 307 50 18 chr11 86225917 86226135 -62557337 + MIR SINE MIR 12 236 -26 294 95 0 0 chr11 86226155 86226197 -62557275 + (TG)n Simple_repeat Simple_repeat 1 42 0 24 0 0 0 chr11 86226635 86226659 -62556813 + AT_rich Low_complexity Low_complexity 1 24 0 270 347 21 0 chr11 86227353 86227448 -62556024 - MIR3 SINE MIR -15 193 97 23 33 0 0 chr11 86228876 86228906 -62554566 + AT_rich Low_complexity Low_complexity 1 30 0 219 192 19 0 chr11 86228955 86229007 -62554465 + (TA)n Simple_repeat Simple_repeat 1 53 0 940 208 6 0 chr11 86229493 86229666 -62553806 - MER2 DNA MER2_type -171 174 1 223 158 18 18 chr11 86229666 86229723 -62553749 + (TG)n Simple_repeat Simple_repeat 2 58 0 6812 71 38 0 chr11 86230689 86232016 -62551456 - L1PA7 LINE L1 -3 6151 4801 2128 150 31 0 chr11 86232040 86232393 -62551079 + THE1B LTR MaLR 1 364 0 1679 174 27 3 chr11 86232728 86233027 -62550445 - AluJb SINE Alu -4 308 3 635 280 90 10 chr11 86233267 86233467 -62550005 + MIR SINE MIR 33 248 -14 708 200 0 0 chr11 86233627 86233807 -62549665 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 429 259 60 54 chr11 86233884 86234050 -62549422 + MIR SINE MIR 31 197 -65 452 177 62 21 chr11 86234057 86234153 -62549319 - MER82 DNA MER2_type -552 101 2 206 0 69 0 chr11 86234867 86234896 -62548576 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1494 178 10 45 chr11 86234899 86235191 -62548281 - AluJb SINE Alu -30 282 1 1707 187 60 3 chr11 86235207 86235576 -62547896 + MLT1B LTR MaLR 1 390 0 186 351 26 26 chr11 86235809 86235886 -62547586 - L2 LINE L2 -8 3264 3188 384 325 118 6 chr11 86236891 86237060 -62546412 + MIR SINE MIR 10 197 -65 389 312 38 25 chr11 86237218 86237375 -62546097 - MIR SINE MIR -85 177 19 809 164 249 0 chr11 86237615 86237804 -62545668 - MER46A DNA MER2_type 0 236 1 25 31 0 0 chr11 86237893 86237925 -62545547 + AT_rich Low_complexity Low_complexity 1 32 0 392 252 99 13 chr11 86239333 86239484 -62543988 + MER104 DNA Tc2 16 179 -1 454 206 19 75 chr11 86239559 86239666 -62543806 - MER5A DNA MER1_type 0 189 89 242 367 13 33 chr11 86240309 86240459 -62543013 + L2 LINE L2 3148 3294 -19 24 32 0 0 chr11 86241084 86241115 -62542357 + AT_rich Low_complexity Low_complexity 1 31 0 1816 153 56 19 chr11 86241571 86241930 -62541542 + THE1C LTR MaLR 1 372 -3 634 230 25 106 chr11 86242592 86242866 -62540606 + MIR SINE MIR 1 252 -10 216 345 204 0 chr11 86242955 86243068 -62540404 - L2 LINE L2 -1 3271 3136 319 292 108 49 chr11 86244806 86245251 -62538221 - L1ME4a LINE L1 -17 6104 5634 897 153 34 34 chr11 86245801 86245978 -62537494 + MLT2B3 LTR ERVL 1 177 -377 301 307 62 42 chr11 86247152 86247314 -62536158 - MIR SINE MIR -62 146 45 236 345 35 0 chr11 86248476 86248563 -62534909 + MIR SINE MIR 15 104 -158 303 374 18 6 chr11 86249342 86249513 -62533959 - MIR SINE MIR -14 248 76 268 347 167 28 chr11 86249795 86250046 -62533426 - L2 LINE L2 -20 3293 3008 25 0 0 0 chr11 86250500 86250525 -62532947 + AT_rich Low_complexity Low_complexity 1 25 0 293 379 59 20 chr11 86250537 86250690 -62532782 + MIR3 SINE MIR 28 186 -22 2257 100 3 10 chr11 86251882 86252191 -62531281 - AluSx SINE Alu -5 307 1 468 317 83 30 chr11 86252206 86252436 -62531036 - MIR SINE MIR -10 252 11 223 348 108 6 chr11 86253181 86253339 -62530133 + MIR SINE MIR 59 232 -30 21 57 0 0 chr11 86253745 86253780 -62529692 + AT_rich Low_complexity Low_complexity 1 35 0 330 312 95 59 chr11 86254209 86254298 -62529174 - MIR SINE MIR 0 262 178 252 0 0 0 chr11 86254298 86254326 -62529146 + (CA)n Simple_repeat Simple_repeat 1 28 0 330 312 95 59 chr11 86254326 86254342 -62529130 - MIR SINE MIR -84 178 164 183 42 0 0 chr11 86254342 86254366 -62529106 + (TTA)n Simple_repeat Simple_repeat 3 26 0 330 312 95 59 chr11 86254366 86254480 -62528992 - MIR SINE MIR -98 164 34 315 161 0 0 chr11 86255232 86255288 -62528184 + GA-rich Low_complexity Low_complexity 1 56 0 323 269 131 15 chr11 86255769 86255899 -62527573 + MIR SINE MIR 45 189 -73 620 212 0 0 chr11 86255988 86256106 -62527366 + FRAM SINE Alu 4 121 -55 1663 159 6 40 chr11 86256205 86256526 -62526946 - AluJo SINE Alu -2 310 1 186 133 0 0 chr11 86256622 86256652 -62526820 + (TG)n Simple_repeat Simple_repeat 2 31 0 3741 177 81 15 chr11 86257342 86258055 -62525417 + MER54B LTR ERVL 1 760 -33 1351 165 48 8 chr11 86258059 86258307 -62525165 - MSTB1 LTR MaLR 0 432 175 510 177 0 0 chr11 86258308 86258387 -62525085 + AluJb SINE Alu 212 290 -22 816 158 158 0 chr11 86258419 86258583 -62524889 - MSTB1 LTR MaLR -242 190 1 21 0 0 0 chr11 86259536 86259557 -62523915 + AT_rich Low_complexity Low_complexity 1 21 0 189 354 37 24 chr11 86259648 86259730 -62523742 - MIR SINE MIR -77 131 49 306 351 58 19 chr11 86260072 86260226 -62523246 + MIR SINE MIR 19 178 -84 418 279 132 71 chr11 86260337 86260717 -62522755 - MLT1K LTR MaLR -42 546 144 196 293 40 13 chr11 86261139 86261214 -62522258 + MIR SINE MIR 74 150 -112 186 297 16 31 chr11 86261415 86261479 -62521993 + MIR SINE MIR 106 168 -94 462 350 13 0 chr11 86262519 86262676 -62520796 - MIR SINE MIR -99 163 5 1939 152 0 29 chr11 86262706 86263022 -62520450 + AluSq SINE Alu 1 307 -6 21 0 0 0 chr11 86264287 86264308 -62519164 + AT_rich Low_complexity Low_complexity 1 21 0 204 97 0 0 chr11 86265607 86265638 -62517834 + (CA)n Simple_repeat Simple_repeat 2 32 0 24 91 0 0 chr11 86265838 86265904 -62517568 + AT_rich Low_complexity Low_complexity 1 66 0 24 0 0 0 chr11 86266172 86266196 -62517276 + AT_rich Low_complexity Low_complexity 1 24 0 1376 86 0 25 chr11 86266255 86266452 -62517020 - L1PA13 LINE L1 -21 6142 5951 6109 28 0 0 chr11 86266725 86267439 -62516033 - L1PA3 LINE L1 0 6155 5442 5180 24 0 0 chr11 86267439 86268094 -62515378 + L1P LINE L1 4772 5426 -729 251 383 78 28 chr11 86268108 86268288 -62515184 + MIR3 SINE MIR 16 204 -4 30 27 0 0 chr11 86268777 86268814 -62514658 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr11 86269076 86269097 -62514375 + AT_rich Low_complexity Low_complexity 1 21 0 726 199 7 0 chr11 86269131 86269272 -62514200 + MER97c DNA MER1_type? 460 601 -489 21 0 0 0 chr11 86269436 86269457 -62514015 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr11 86269653 86269675 -62513797 + AT_rich Low_complexity Low_complexity 1 22 0 192 40 0 0 chr11 86270165 86270190 -62513282 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 208 231 0 0 chr11 86271165 86271204 -62512268 - MIR SINE MIR -83 125 87 285 355 108 44 chr11 86271718 86271921 -62511551 - MIR SINE MIR -45 217 2 1373 265 66 26 chr11 86272252 86273073 -62510399 + MER45C DNA AcHobo 2 953 0 202 359 16 0 chr11 86273586 86273650 -62509822 - L2 LINE L2 -3 3269 3205 206 313 16 0 chr11 86273676 86273740 -62509732 - MIR SINE MIR -42 220 156 210 333 19 37 chr11 86274940 86275048 -62508424 - MIR SINE MIR -97 165 60 249 248 132 41 chr11 86275507 86275628 -62507844 - MIR SINE MIR -7 255 124 357 366 86 40 chr11 86275651 86276126 -62507346 - L2 LINE L2 0 3313 2817 37 0 0 0 chr11 86278159 86278196 -62505276 + AT_rich Low_complexity Low_complexity 1 37 0 375 127 0 0 chr11 86278471 86278534 -62504938 + (TG)n Simple_repeat Simple_repeat 2 64 0 580 332 81 53 chr11 86278734 86279168 -62504304 + L1MA5 LINE L1 1538 1983 -5503 11680 222 46 18 chr11 86280026 86282557 -62500915 + L1MA5 LINE L1 1897 4357 -3362 180 0 0 0 chr11 86282557 86282577 -62500895 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 11680 222 46 18 chr11 86282577 86283405 -62500067 + L1MA5 LINE L1 4357 5161 -2558 1711 168 18 0 chr11 86283405 86283717 -62499755 + AluSx SINE Alu 5 321 0 11680 222 46 18 chr11 86283717 86285945 -62497527 + L1MA5 LINE L1 5161 7709 -10 369 0 0 0 chr11 86285948 86285989 -62497483 + (CA)n Simple_repeat Simple_repeat 2 42 0 195 373 113 6 chr11 86287086 86287263 -62496209 - MIR SINE MIR -19 243 48 206 430 23 0 chr11 86287915 86288043 -62495429 - L2 LINE L2 -13 3259 3129 2123 125 3 0 chr11 86288411 86288716 -62494756 - AluSg SINE Alu -4 306 1 34 65 0 0 chr11 86288742 86288804 -62494668 + AT_rich Low_complexity Low_complexity 1 62 0 2420 163 14 25 chr11 86288868 86289304 -62494168 + Tigger2a DNA MER2_type 1 431 -3 291 335 50 34 chr11 86289632 86289811 -62493661 - MIR SINE MIR -7 255 74 1749 126 3 29 chr11 86290020 86290330 -62493142 - AluSx SINE Alu -10 302 1 2162 54 0 35 chr11 86290363 86290678 -62492794 + AluY SINE Alu 1 304 -7 245 267 8 25 chr11 86290810 86290930 -62492542 + AluY SINE Alu 184 301 0 261 343 0 0 chr11 86291177 86291247 -62492225 - L2 LINE L2 -14 3258 3189 327 390 32 5 chr11 86291481 86291671 -62491801 - L2 LINE L2 -433 2881 2687 1808 110 96 0 chr11 86292438 86292710 -62490762 - AluSq SINE Alu -15 298 1 182 362 21 11 chr11 86292902 86292996 -62490476 - MIR SINE MIR -78 184 90 579 254 0 83 chr11 86294078 86294283 -62489189 + MER5A DNA MER1_type 2 189 0 21 0 0 0 chr11 86294312 86294333 -62489139 + AT_rich Low_complexity Low_complexity 1 21 0 226 362 11 11 chr11 86294632 86294726 -62488746 - MIR3 SINE MIR -24 184 91 24 67 0 0 chr11 86295271 86295316 -62488156 + AT_rich Low_complexity Low_complexity 1 45 0 249 319 55 0 chr11 86295745 86295836 -62487636 - MIR SINE MIR -111 151 56 201 291 13 13 chr11 86295898 86295977 -62487495 + GA-rich Low_complexity Low_complexity 2 80 0 27 73 0 0 chr11 86296209 86296264 -62487208 + AT_rich Low_complexity Low_complexity 1 55 0 629 333 30 8 chr11 86297291 86297528 -62485944 - MIR SINE MIR 0 262 21 180 376 20 0 chr11 86297761 86297862 -62485610 + MIR SINE MIR 117 219 -43 21 57 0 19 chr11 86299572 86299608 -62483864 + AT_rich Low_complexity Low_complexity 1 37 -15 261 0 0 0 chr11 86299608 86299637 -62483835 + (CA)n Simple_repeat Simple_repeat 2 30 0 21 57 0 19 chr11 86299637 86299653 -62483819 + AT_rich Low_complexity Low_complexity 37 52 0 468 339 100 35 chr11 86300212 86300531 -62482941 + L3 LINE CR1 435 774 -803 3909 87 24 0 chr11 86301848 86302389 -62481083 + MER41A LTR ERV1 1 554 0 25882 151 98 55 chr11 86302475 86308175 -62475297 + MER41A-int LTR ERV1 3 5944 -2 3759 111 9 2 chr11 86308175 86308725 -62474747 + MER41A LTR ERV1 1 554 0 181 224 45 0 chr11 86309517 86309584 -62473888 + GA-rich Low_complexity Low_complexity 4 73 0 27 0 0 0 chr11 86309968 86309995 -62473477 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr11 86310173 86310196 -62473276 + AT_rich Low_complexity Low_complexity 1 23 0 1450 187 7 39 chr11 86310196 86310506 -62472966 - AluJo SINE Alu -10 302 3 1732 139 0 86 chr11 86310830 86311167 -62472305 - AluSx SINE Alu -4 308 1 249 207 27 0 chr11 86312244 86312308 -62471164 + Alu SINE Alu 251 298 -4 279 0 0 0 chr11 86315444 86315475 -62467997 + (A)n Simple_repeat Simple_repeat 1 31 0 25 0 0 0 chr11 86315559 86315584 -62467888 + GC_rich Low_complexity Low_complexity 1 25 0 243 0 0 0 chr11 86315713 86315740 -62467732 + (A)n Simple_repeat Simple_repeat 1 27 0 396 0 0 0 chr11 86316129 86316173 -62467299 + (TG)n Simple_repeat Simple_repeat 2 45 0 195 392 14 0 chr11 86316851 86316925 -62466547 + MIR SINE MIR 68 142 -66 181 269 39 0 chr11 86317327 86317379 -62466093 + MIR SINE MIR 20 73 -135 639 259 10 58 chr11 86317455 86317660 -62465812 - MIR SINE MIR -6 256 62 1128 309 64 25 chr11 86317686 86318440 -62465032 - L1MC4 LINE L1 -1 8041 7259 194 207 17 0 chr11 86318788 86318846 -62464626 + CT-rich Low_complexity Low_complexity 1 59 0 517 275 64 0 chr11 86318872 86318998 -62464474 + L1M4 LINE L1 3553 3694 -2452 261 0 0 0 chr11 86318998 86319027 -62464445 + (CA)n Simple_repeat Simple_repeat 2 30 0 517 275 64 0 chr11 86319027 86319071 -62464401 + L1M4 LINE L1 3694 3734 -2412 229 291 47 0 chr11 86319073 86319159 -62464313 + L1MC/D LINE L1 5782 5871 -371 * 470 310 145 36 chr11 86319156 86320250 -62463222 - L1M4 LINE L1 -1143 5003 4029 2054 183 55 5 chr11 86320250 86320654 -62462818 + MSTB LTR MaLR 3 426 0 470 310 145 36 chr11 86320654 86321444 -62462028 - L1M4 LINE L1 -2117 4029 2914 11750 240 27 25 chr11 86321450 86326613 -62456859 - L1PA16 LINE L1 -6 6863 1668 2037 159 120 5 chr11 86326948 86327332 -62456140 - MSTA LTR MaLR 0 428 1 8622 176 24 14 chr11 86327333 86328966 -62454506 - MSTA-int LTR MaLR -1 1650 1 1912 161 156 5 chr11 86328966 86329338 -62454134 - MSTA LTR MaLR 0 428 1 3232 222 39 24 chr11 86329563 86330315 -62453157 - L1PA16 LINE L1 -6086 763 1 1057 241 30 67 chr11 86330448 86330854 -62452618 - L1ME1 LINE L1 -45 6121 5731 1183 268 97 46 chr11 86330861 86331853 -62451619 + L1M4 LINE L1 4096 5137 -1009 195 146 0 0 chr11 86332309 86332350 -62451122 + (CA)n Simple_repeat Simple_repeat 2 42 0 327 25 0 0 chr11 86332440 86332480 -62450992 + (CA)n Simple_repeat Simple_repeat 1 40 0 961 280 34 19 chr11 86332489 86332867 -62450605 - L1ME4a LINE L1 -195 5926 5543 23 33 0 0 chr11 86333147 86333177 -62450295 + AT_rich Low_complexity Low_complexity 1 30 0 188 204 23 0 chr11 86333730 86333774 -62449698 - L2 LINE L2 -2 3311 3267 739 361 61 25 chr11 86334118 86334592 -62448880 - L2 LINE L2 -502 2812 2322 1448 212 38 70 chr11 86334982 86335483 -62447989 - L1ME4a LINE L1 -1254 4892 4408 31 0 0 0 chr11 86335560 86335591 -62447881 + AT_rich Low_complexity Low_complexity 1 31 0 1692 58 76 5 chr11 86335602 86335825 -62447647 - AluY SINE Alu -29 282 44 224 233 81 47 chr11 86335879 86335965 -62447507 + L2 LINE L2 3149 3237 -76 307 374 38 8 chr11 86336429 86336560 -62446912 + L2 LINE L2 3138 3272 0 858 278 59 33 chr11 86337103 86337589 -62445883 + L1MC/D LINE L1 3704 4206 -1940 1298 174 26 0 chr11 86337589 86337819 -62445653 - MER46A DNA MER2_type 0 236 1 858 278 59 33 chr11 86337819 86337854 -62445618 + L1MC/D LINE L1 4206 4239 -1907 288 232 110 12 chr11 86337867 86337949 -62445523 - Tigger7 DNA MER2_type -1 2486 2397 1725 158 9 8 chr11 86337957 86338419 -62445053 - Tigger7 DNA MER2_type -219 514 1 1320 305 75 30 chr11 86338431 86339309 -62444163 + L1MC/D LINE L1 4263 5197 -949 3194 185 20 3 chr11 86339309 86339903 -62443569 - MER6A DNA MER2_type -1 604 1 1320 305 75 30 chr11 86339903 86340078 -62443394 + L1MC/D LINE L1 5197 5363 -783 257 353 90 13 chr11 86340242 86340398 -62443074 + L1MC/D LINE L1 5487 5654 -2154 2534 93 20 18 chr11 86340543 86340941 -62442531 + L1MA2 LINE L1 5906 6304 0 24 0 0 0 chr11 86341347 86341371 -62442101 + AT_rich Low_complexity Low_complexity 1 24 0 226 327 88 0 chr11 86341896 86342009 -62441463 - MIR SINE MIR -11 251 129 295 276 0 31 chr11 86342138 86342236 -62441236 - L1PA15-16 LINE L1 -6740 109 15 377 276 55 28 chr11 86342236 86342381 -62441091 - LTR16A1 LTR ERVL -162 295 147 716 230 31 1 chr11 86342411 86342603 -62440869 - MLT1D LTR MaLR -78 427 247 2587 211 12 41 chr11 86342628 86343387 -62440085 + L1 LINE L1 2813 3549 -2597 1323 238 12 94 chr11 86393387 86393867 -62389605 - MLT1E2 LTR MaLR -185 441 1 25 0 0 0 chr11 86394273 86394298 -62389174 + AT_rich Low_complexity Low_complexity 1 25 0 2273 96 0 0 chr11 86395247 86395549 -62387923 - AluSg SINE Alu -8 302 1 28 0 0 0 chr11 86396175 86396203 -62387269 + AT_rich Low_complexity Low_complexity 1 28 0 540 72 12 0 chr11 86396203 86396286 -62387186 - L1P LINE L1 -801 5350 5267 * 4662 112 60 12 chr11 86396282 86397033 -62386439 + L1PB1 LINE L1 5361 6147 -4 30 0 0 0 chr11 86397033 86397063 -62386409 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr11 86397076 86397100 -62386372 + AT_rich Low_complexity Low_complexity 1 24 0 180 393 24 12 chr11 86397187 86397271 -62386201 - L2 LINE L2 -3 3269 3185 21 36 0 0 chr11 86397766 86397794 -62385678 + AT_rich Low_complexity Low_complexity 1 28 0 3837 243 48 6 chr11 86398169 86399177 -62384295 - Charlie1a DNA MER1_type -373 1082 33 504 301 29 43 chr11 86399318 86399527 -62383945 - MER63A DNA MER1_type 0 210 5 513 359 124 7 chr11 86400187 86400460 -62383012 + L2 LINE L2 2968 3272 0 26 50 0 0 chr11 86401880 86401920 -62381552 + AT_rich Low_complexity Low_complexity 1 40 0 256 307 108 40 chr11 86402155 86402331 -62381141 + MIR SINE MIR 62 249 -13 469 195 0 16 chr11 86402430 86402558 -62380914 + CT-rich Low_complexity Low_complexity 4 129 0 350 309 139 31 chr11 86402560 86402942 -62380530 - HAL1 LINE L1 -1205 1302 880 * 626 133 35 29 chr11 86402609 86402957 -62380515 + CT-rich Low_complexity Low_complexity 1 349 0 185 333 16 0 chr11 86403114 86403177 -62380295 + MIR SINE MIR 187 250 -12 205 75 50 25 chr11 86403916 86403956 -62379516 + A-rich Low_complexity Low_complexity 2 42 0 21 0 0 0 chr11 86404019 86404040 -62379432 + AT_rich Low_complexity Low_complexity 1 21 0 186 103 0 0 chr11 86404396 86404425 -62379047 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 26 0 0 0 chr11 86404702 86404728 -62378744 + AT_rich Low_complexity Low_complexity 1 26 0 28 48 0 0 chr11 86404988 86405030 -62378442 + AT_rich Low_complexity Low_complexity 1 42 0 1175 171 14 0 chr11 86405812 86406023 -62377449 + L1M1 LINE L1 5585 5798 -505 25 0 0 0 chr11 86406076 86406101 -62377371 + AT_rich Low_complexity Low_complexity 1 25 0 27 81 0 0 chr11 86406648 86406710 -62376762 + AT_rich Low_complexity Low_complexity 1 62 0 5657 93 18 50 chr11 86407045 86407952 -62375520 - L1PA8A LINE L1 0 6131 5254 4399 128 17 8 chr11 86407956 86408668 -62374804 + L1PA8A LINE L1 4510 5227 -919 3623 259 47 34 chr11 86409073 86411727 -62371745 - L1MCb LINE L1 -3466 3098 12 26 50 0 0 chr11 86411758 86411798 -62371674 + AT_rich Low_complexity Low_complexity 1 40 0 372 335 18 57 chr11 86411815 86412042 -62371430 - L1MCb LINE L1 -5488 419 202 882 258 64 37 chr11 86412126 86412500 -62370972 - MLT1B LTR MaLR 0 390 4 244 261 0 15 chr11 86412734 86412799 -62370673 - L1MCb LINE L1 -6344 82 19 240 310 14 14 chr11 86413058 86413129 -62370343 - MIR SINE MIR -66 142 72 289 239 92 27 chr11 86413301 86413460 -62370012 - MLT1L LTR MaLR -35 580 312 676 208 192 21 chr11 86413785 86414025 -62369447 + LTR50 LTR ERVL 10 290 -505 491 285 166 4 chr11 86414072 86414325 -62369147 + LTR50 LTR ERVL 387 680 -115 542 347 33 19 chr11 86414831 86415219 -62368253 + LTR16A LTR ERVL 16 449 -1 25 51 0 0 chr11 86415578 86415617 -62367855 + AT_rich Low_complexity Low_complexity 1 39 0 567 307 54 66 chr11 86415685 86416203 -62367269 + ERVL LTR ERVL 1025 1536 -4228 930 233 72 27 chr11 86416298 86416560 -62366912 - MLT1D LTR MaLR 0 505 232 811 253 148 19 chr11 86417193 86417612 -62365860 + L1MC4a LINE L1 7159 7631 -177 1397 174 51 14 chr11 86418183 86418459 -62365013 + AluJb SINE Alu 1 286 -26 292 91 23 0 chr11 86418669 86418713 -62364759 + MSTB1 LTR MaLR 1 45 -387 745 247 103 2 chr11 86418728 86418927 -62364545 - MLT1C LTR MaLR -108 359 153 429 285 64 17 chr11 86419056 86419291 -62364181 - L1MCa LINE L1 -4112 2452 2207 497 240 31 31 chr11 86419314 86419506 -62363966 - L1MCa LINE L1 -4423 2141 1950 2935 266 30 28 chr11 86419510 86420489 -62362983 - L1MCa LINE L1 -5022 1023 43 1845 151 0 20 chr11 86420560 86420864 -62362608 - AluJb SINE Alu -14 298 1 22 0 0 0 chr11 86423050 86423072 -62360400 + AT_rich Low_complexity Low_complexity 1 22 0 1555 221 29 3 chr11 86423120 86423427 -62360045 + L1M1 LINE L1 13 327 -7238 373 203 0 0 chr11 86423565 86423639 -62359833 + Charlie1 DNA MER1_type 2688 2761 0 297 0 0 0 chr11 86423678 86423711 -62359761 + (CA)n Simple_repeat Simple_repeat 1 33 0 214 326 124 0 chr11 86424345 86424434 -62359038 + MIR SINE MIR 54 153 -109 905 234 48 0 chr11 86425377 86425586 -62357886 + MER58B DNA MER1_type 123 341 0 211 211 0 0 chr11 86425631 86425669 -62357803 + (ATG)n Simple_repeat Simple_repeat 3 40 0 268 327 0 10 chr11 86426033 86426137 -62357335 + MLT1L LTR MaLR 149 251 -364 510 303 26 60 chr11 86426137 86426371 -62357101 + Zaphod DNA AcHobo 206 431 -3600 839 206 9 83 chr11 86426378 86426448 -62357024 - MLT1A1 LTR MaLR -154 211 137 2181 85 37 7 chr11 86426448 86426742 -62356730 - AluSq SINE Alu -10 303 1 839 206 9 83 chr11 86426742 86426899 -62356573 - MLT1A1 LTR MaLR -228 137 1 226 219 53 86 chr11 86427161 86427312 -62356160 - L1MC5 LINE L1 -302 7659 7514 742 216 54 22 chr11 86427430 86427615 -62355857 + MER3 DNA MER1_type 2 192 -17 1071 202 52 132 chr11 86427645 86427990 -62355482 - L1MC5 LINE L1 -544 7417 7147 2367 60 0 7 chr11 86427990 86428291 -62355181 - AluY SINE Alu -12 299 1 1071 202 52 132 chr11 86428291 86428599 -62354873 - L1MC5 LINE L1 -814 7147 6816 575 286 116 8 chr11 86428667 86428926 -62354546 + Zaphod DNA AcHobo 3744 4030 -1 198 361 42 42 chr11 86428984 86429150 -62354322 - MIR SINE MIR -50 212 47 21 0 0 0 chr11 86429285 86429306 -62354166 + AT_rich Low_complexity Low_complexity 1 21 0 1792 157 0 41 chr11 86429840 86430158 -62353314 - AluJb SINE Alu -6 306 2 214 231 0 0 chr11 86431184 86431223 -62352249 + (CA)n Simple_repeat Simple_repeat 1 39 0 1061 211 133 44 chr11 86431364 86431484 -62351988 - MER2 DNA MER2_type 0 345 237 3140 76 2 35 chr11 86431484 86431947 -62351525 + LTR7 LTR ERV1 1 448 -2 1061 211 133 44 chr11 86431947 86431981 -62351491 - MER2 DNA MER2_type -108 237 207 1720 201 68 25 chr11 86431981 86432423 -62351049 + MER65C LTR ERV1 1 461 0 1061 211 133 44 chr11 86432423 86432584 -62350888 - MER2 DNA MER2_type -138 207 1 370 261 17 34 chr11 86432637 86432756 -62350716 + MIR SINE MIR 53 169 -93 183 80 0 0 chr11 86433318 86433343 -62350129 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 25 0 0 0 chr11 86434010 86434035 -62349437 + AT_rich Low_complexity Low_complexity 1 25 0 342 229 58 155 chr11 86434423 86434681 -62348791 + Charlie2 DNA MER1_type 134 366 -2496 * 636 241 194 5 chr11 86434677 86435054 -62348418 + Charlie2 DNA MER1_type 2231 2678 -184 379 281 88 19 chr11 86435070 86435230 -62348242 - L1MDa LINE L1 -3742 2798 2628 1420 145 58 0 chr11 86435233 86435475 -62347997 + Tigger1 DNA MER2_type 1983 2238 -180 2027 130 0 3 chr11 86435610 86435902 -62347570 + AluSg SINE Alu 3 293 -17 291 254 57 25 chr11 86436256 86436378 -62347094 - L1MDa LINE L1 -4564 1976 1851 405 0 0 0 chr11 86436404 86436449 -62347023 + (CA)n Simple_repeat Simple_repeat 2 46 0 210 345 88 29 chr11 86437253 86437424 -62346048 + MIR SINE MIR 72 252 -10 722 339 93 50 chr11 86437649 86438530 -62344942 + L2 LINE L2 1934 2942 -372 234 128 0 0 chr11 86438638 86438677 -62344795 + (GAA)n Simple_repeat Simple_repeat 1 39 0 2119 82 3 23 chr11 86438692 86438998 -62344474 - AluY SINE Alu -6 305 6 518 226 0 35 chr11 86439191 86439306 -62344166 + MER63A DNA MER1_type 72 182 -28 238 227 0 15 chr11 86439641 86439707 -62343765 + (TA)n Simple_repeat Simple_repeat 2 66 0 477 62 0 0 chr11 86440512 86440577 -62342895 + (TG)n Simple_repeat Simple_repeat 1 65 0 232 334 148 4 chr11 86440861 86441001 -62342471 - MIR SINE MIR -64 144 9 209 310 138 9 chr11 86441194 86441310 -62342162 + MIR SINE MIR 2 132 -130 292 261 23 34 chr11 86442063 86442151 -62341321 - MIR SINE MIR -4 258 172 256 298 105 9 chr11 86442159 86442273 -62341199 + MIR SINE MIR 138 262 0 * 266 328 221 0 chr11 86442267 86442389 -62341083 - MIR SINE MIR -109 153 5 2197 101 3 3 chr11 86442409 86442716 -62340756 - AluSx SINE Alu -5 307 1 200 182 0 0 chr11 86442756 86442789 -62340683 + (CA)n Simple_repeat Simple_repeat 1 33 0 275 304 29 29 chr11 86444295 86444397 -62339075 - MIR SINE MIR -45 217 116 1180 182 5 0 chr11 86444644 86444853 -62338619 - MER2 DNA MER2_type -135 210 1 333 270 0 0 chr11 86445537 86445611 -62337861 - L2 LINE L2 0 3272 3199 780 306 73 14 chr11 86445795 86446070 -62337402 - L2 LINE L2 -458 2856 2566 9428 196 13 2 chr11 86447179 86448820 -62334652 + L1MA3 LINE L1 383 2042 -5523 3552 126 10 29 chr11 86448817 86449429 -62334043 + L1MA3 LINE L1 2556 3155 -4410 * 1163 249 7 18 chr11 86449430 86449742 -62333730 + AluJo SINE Alu 1 309 0 12995 187 42 12 chr11 86449748 86452631 -62330841 + L1MA3 LINE L1 3157 5951 -1773 180 0 0 0 chr11 86452631 86452651 -62330821 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 12995 187 42 12 chr11 86452651 86453519 -62329953 + L1MA3 LINE L1 5951 7050 -674 2214 123 0 0 chr11 86453519 86453819 -62329653 + AluSg SINE Alu 1 300 -10 12995 187 42 12 chr11 86453819 86454098 -62329374 + L1MA3 LINE L1 7050 7319 -405 363 129 16 0 chr11 86454262 86454324 -62329148 + L1MB8 LINE L1 6105 6167 -11 6089 243 66 30 chr11 86454468 86457496 -62325976 - L1MB8 LINE L1 -28 7569 4652 185 0 40 0 chr11 86457496 86457521 -62325951 + (TTA)n Simple_repeat Simple_repeat 2 27 0 6089 243 66 30 chr11 86457521 86457534 -62325938 - L1MB8 LINE L1 -2945 4652 4641 2209 100 0 0 chr11 86457534 86457815 -62325657 - AluY SINE Alu -30 281 1 6089 243 66 30 chr11 86457815 86458521 -62324951 - L1MB8 LINE L1 -2956 4641 3695 227 215 25 0 chr11 86458534 86458613 -62324859 - L1MB2 LINE L1 -10 6161 6081 1739 167 49 22 chr11 86458613 86458978 -62324494 + THE1C LTR MaLR 1 375 0 4785 163 23 58 chr11 86458980 86459139 -62324333 + THE1C-int LTR MaLR 3 166 -1414 1802 165 3 31 chr11 86459139 86459464 -62324008 - AluSx SINE Alu 0 317 1 4785 163 23 58 chr11 86459464 86460318 -62323154 + THE1C-int LTR MaLR 166 981 -599 * 14945 181 63 7 chr11 86460316 86463324 -62320148 - L1MB8 LINE L1 -4374 3191 15 1550 262 61 28 chr11 86463318 86463929 -62319543 - L1M4b LINE L1 -5397 1462 832 * 1546 218 24 90 chr11 86463931 86464463 -62319009 - MLT2B3 LTR ERVL 0 554 58 799 322 86 55 chr11 86464547 86465218 -62318254 - L1M4b LINE L1 -6078 781 90 351 94 0 62 chr11 86466292 86466397 -62317075 - Alu SINE Alu -17 284 231 391 290 62 167 chr11 86466446 86466787 -62316685 - L1M2 LINE L1 -5879 970 666 2265 138 11 8 chr11 86468372 86468733 -62314739 - THE1B LTR MaLR 0 364 3 23 54 0 0 chr11 86470223 86470260 -62313212 + AT_rich Low_complexity Low_complexity 1 37 0 705 239 43 32 chr11 86470790 86470978 -62312494 + MER58A DNA MER1_type 35 224 0 226 301 97 0 chr11 86470992 86471085 -62312387 + L2 LINE L2 3169 3270 -2 27 0 0 0 chr11 86471278 86471305 -62312167 + AT_rich Low_complexity Low_complexity 1 27 0 3526 156 63 67 chr11 86472951 86474290 -62309182 - LTR12 LTR ERV1 -21 1600 17 275 288 9 0 chr11 86474537 86474648 -62308824 + (TA)n Simple_repeat Simple_repeat 2 113 0 191 343 52 45 chr11 86474656 86474790 -62308682 + L2 LINE L2 3179 3313 0 256 303 0 11 chr11 86475164 86475253 -62308219 + GA-rich Low_complexity Low_complexity 2 89 0 23 33 0 0 chr11 86475318 86475348 -62308124 + AT_rich Low_complexity Low_complexity 1 30 0 224 327 39 67 chr11 86475772 86475980 -62307492 + L3 LINE CR1 1023 1224 -353 266 71 0 0 chr11 86476188 86476230 -62307242 - L1PA8 LINE L1 -1 6171 6130 800 117 0 15 chr11 86476245 86476382 -62307090 - L1PA8 LINE L1 -9 6163 6029 191 229 0 0 chr11 86476385 86476420 -62307052 - L3 LINE CR1 -13 1564 1530 463 162 0 36 chr11 86477992 86478103 -62305369 + CT-rich Low_complexity Low_complexity 3 109 0 813 130 0 0 chr11 86478113 86478228 -62305244 - FLAM_C SINE Alu -15 118 4 1640 188 36 21 chr11 86478691 86479075 -62304397 + MLT1B LTR MaLR 1 390 0 22 0 0 0 chr11 86479384 86479406 -62304066 + AT_rich Low_complexity Low_complexity 1 22 0 188 346 41 100 chr11 86479745 86480014 -62303458 + L2 LINE L2 2910 3162 -110 183 220 20 40 chr11 86480209 86480259 -62303213 - L2 LINE L2 0 3313 3265 222 37 0 0 chr11 86481100 86481127 -62302345 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 256 79 0 0 chr11 86481408 86481446 -62302026 + MADE1 DNA Mariner 1 38 -42 1717 173 24 65 chr11 86482088 86482143 -62301329 + MSTB LTR MaLR 71 127 -299 1902 141 32 37 chr11 86482143 86482518 -62300954 - THE1C LTR MaLR 0 375 3 8940 139 47 37 chr11 86482518 86484081 -62299391 - THE1C-int LTR MaLR 0 1580 1 1664 164 32 42 chr11 86484081 86484460 -62299012 - THE1C LTR MaLR 0 375 1 1717 173 24 65 chr11 86484460 86484535 -62298937 + MSTB LTR MaLR 125 201 -225 1996 138 7 3 chr11 86484535 86484826 -62298646 + AluSx SINE Alu 1 292 -20 1717 173 24 65 chr11 86484826 86485063 -62298409 + MSTB LTR MaLR 201 426 0 417 194 0 0 chr11 86485268 86485340 -62298132 - AluYb8 SINE Alu -204 114 43 4404 57 7 0 chr11 86485340 86485917 -62297555 - L1PA6 LINE L1 -260 5894 5314 22 0 0 0 chr11 86486544 86486566 -62296906 + AT_rich Low_complexity Low_complexity 1 22 0 374 303 102 79 chr11 86487178 86487559 -62295913 - L1M4 LINE L1 -3162 2984 2613 605 170 20 39 chr11 86487559 86487712 -62295760 - L1MA9 LINE L1 0 6312 6163 374 303 102 79 chr11 86487712 86487853 -62295619 - L1M4 LINE L1 -3533 2613 2477 3359 92 5 0 chr11 86487853 86488300 -62295172 - MLT2A2 LTR ERVL 0 453 5 374 303 102 79 chr11 86488300 86488483 -62294989 - L1M4 LINE L1 -3669 2477 2262 2375 158 9 32 chr11 86489682 86490120 -62293352 + MSTA LTR MaLR 1 428 0 24 32 0 0 chr11 86490162 86490193 -62293279 + AT_rich Low_complexity Low_complexity 1 31 0 1313 190 71 45 chr11 86490505 86490842 -62292630 + THE1C LTR MaLR 25 370 -5 9214 138 11 32 chr11 86490844 86492440 -62291032 + THE1C-int LTR MaLR 19 1580 0 1986 163 21 24 chr11 86492442 86492816 -62290656 + THE1C LTR MaLR 3 375 0 1371 158 3 115 chr11 86492862 86493016 -62290456 - MER4A LTR ERV1 0 664 565 2584 109 92 5 chr11 86493016 86493428 -62290044 + LTR7 LTR ERV1 1 448 -2 1371 158 3 115 chr11 86493428 86493603 -62289869 - MER4A LTR ERV1 -99 565 372 270 132 19 19 chr11 86493603 86493656 -62289816 - MER4A LTR ERV1 -351 313 261 21 0 0 0 chr11 86493755 86493776 -62289696 + AT_rich Low_complexity Low_complexity 1 21 0 456 284 226 5 chr11 86495183 86495391 -62288081 + MIR SINE MIR 1 254 -8 381 351 0 7 chr11 86495500 86495654 -62287818 + MER52A LTR ERV1 660 812 -943 1519 157 47 4 chr11 86495800 86496074 -62287398 + MER61D LTR ERV1 216 501 0 1799 96 42 8 chr11 86497004 86497351 -62286121 + LTR7 LTR ERV1 1 448 -2 30696 102 39 30 chr11 86497353 86502459 -62281013 + HERVH LTR ERV1 1 5149 -2564 1316 134 19 0 chr11 86502460 86502676 -62280796 + HERVH LTR ERV1 5600 5819 -1894 2305 88 48 13 chr11 86502676 86503053 -62280419 + HERVH LTR ERV1 7324 7713 0 2613 95 95 5 chr11 86503055 86503464 -62280008 + LTR7 LTR ERV1 3 448 -2 2460 129 18 67 chr11 86503474 86504090 -62279382 + MER4E LTR ERV1 1 766 0 2038 137 3 3 chr11 86504292 86504598 -62278874 - AluY SINE Alu -5 306 1 1866 77 328 0 chr11 86504726 86505064 -62278408 + L1PA10 LINE L1 5657 6105 -63 2109 164 5 23 chr11 86505064 86505455 -62278017 + L1PA15 LINE L1 5774 6157 -8 5851 124 11 12 chr11 86506629 86507650 -62275822 - L1PA15 LINE L1 -6 6159 5143 196 229 24 24 chr11 86507710 86507793 -62275679 + CT-rich Low_complexity Low_complexity 3 85 0 325 219 9 9 chr11 86508968 86509073 -62274399 + (TA)n Simple_repeat Simple_repeat 2 106 0 26 50 0 0 chr11 86509333 86509373 -62274099 + AT_rich Low_complexity Low_complexity 1 40 0 240 329 121 57 chr11 86509598 86509896 -62273576 + L3 LINE CR1 400 716 -861 2242 84 3 10 chr11 86509987 86510284 -62273188 - AluY SINE Alu -16 295 1 239 373 9 18 chr11 86510570 86510680 -62272792 + L2 LINE L2 2944 3052 -220 35 24 0 0 chr11 86510768 86510810 -62272662 + AT_rich Low_complexity Low_complexity 1 42 0 29 0 0 0 chr11 86511043 86511072 -62272400 + AT_rich Low_complexity Low_complexity 1 29 0 2217 188 31 5 chr11 86511185 86511600 -62271872 - MSTB LTR MaLR 0 426 1 253 250 89 40 chr11 86512246 86512370 -62271102 + L2 LINE L2 2929 3058 -214 406 294 68 18 chr11 86513193 86513356 -62270116 + MIR SINE MIR 51 221 -41 291 318 90 59 chr11 86513483 86513904 -62269568 + L2 LINE L2 2809 3242 -71 357 320 80 10 chr11 86514331 86514531 -62268941 + L1ME LINE L1 5522 5735 -386 25 0 0 0 chr11 86514676 86514701 -62268771 + AT_rich Low_complexity Low_complexity 1 25 0 646 213 28 47 chr11 86514981 86515184 -62268288 - MLT1E3 LTR MaLR -347 307 52 609 229 14 7 chr11 86515193 86515333 -62268139 - MLT2F LTR ERVL -522 141 1 24 0 0 0 chr11 86515356 86515380 -62268092 + AT_rich Low_complexity Low_complexity 1 24 0 652 174 23 0 chr11 86515512 86515644 -62267828 - L1PB4 LINE L1 0 6156 6022 245 315 148 0 chr11 86515644 86515752 -62267720 + L2 LINE L2 3190 3313 0 189 358 117 19 chr11 86515774 86515936 -62267536 - MIR SINE MIR -77 185 8 37 62 0 0 chr11 86516794 86516859 -62266613 + AT_rich Low_complexity Low_complexity 1 65 0 467 361 27 54 chr11 86517483 86517864 -62265608 - L2 LINE L2 -181 3091 2724 1049 67 0 0 chr11 86518411 86518546 -62264926 - L1PA7 LINE L1 -8 6146 6012 1879 94 26 8 chr11 86518546 86518812 -62264660 - AluSq SINE Alu -41 272 2 649 142 83 8 chr11 86519014 86519134 -62264338 - THE1C LTR MaLR -246 129 1 560 241 54 6 chr11 86519144 86519310 -62264162 + L1ME3A LINE L1 5988 6161 -9 2182 92 17 0 chr11 86519359 86519654 -62263818 + AluSg SINE Alu 2 301 -9 190 328 0 0 chr11 86519654 86519711 -62263761 + L2 LINE L2 3252 3308 -5 23 33 0 0 chr11 86520667 86520697 -62262775 + AT_rich Low_complexity Low_complexity 1 30 0 9138 197 22 18 chr11 86521522 86525381 -62258091 + L1MA4A LINE L1 1036 6899 -106 2399 127 3 11 chr11 86525381 86525759 -62257713 + THE1C LTR MaLR 1 375 0 9138 197 22 18 chr11 86525759 86525861 -62257611 + L1MA4A LINE L1 6899 6999 -6 330 284 17 52 chr11 86525875 86525991 -62257481 - MIR SINE MIR -149 113 2 5706 162 24 10 chr11 86526855 86528423 -62255049 - L1MA3 LINE L1 0 6305 4713 265 304 38 0 chr11 86528513 86528592 -62254880 + L2 LINE L2 2976 3057 -215 438 367 33 0 chr11 86528769 86528949 -62254523 - MIR SINE MIR -12 250 65 2103 130 10 0 chr11 86529431 86529738 -62253734 + AluSg SINE Alu 1 310 0 478 241 94 24 chr11 86529806 86529976 -62253496 - LTR16C LTR ERVL -1 490 309 249 391 15 23 chr11 86530261 86530394 -62253078 - L2 LINE L2 -217 3055 2924 2639 83 11 0 chr11 86530642 86530992 -62252480 - THE1A LTR MaLR -1 354 1 513 293 103 67 chr11 86531123 86531519 -62251953 - MLT1H LTR MaLR -2 547 134 336 48 0 0 chr11 86531519 86531561 -62251911 + (CA)n Simple_repeat Simple_repeat 1 42 0 513 293 103 67 chr11 86531561 86531580 -62251892 - MLT1H LTR MaLR -415 134 117 24 32 0 0 chr11 86531663 86531694 -62251778 + AT_rich Low_complexity Low_complexity 1 31 0 227 319 121 9 chr11 86532484 86532600 -62250872 - L3 LINE CR1 -28 1549 1421 2046 196 6 17 chr11 86533555 86534253 -62249219 - L1MA4 LINE L1 -725 5575 4880 3524 172 24 10 chr11 86534253 86534949 -62248523 + L1MA4 LINE L1 5576 6288 -12 2769 7 0 0 chr11 86535892 86536195 -62247277 - AluYa5 SINE Alu -8 303 1 23 0 0 0 chr11 86536575 86536598 -62246874 + AT_rich Low_complexity Low_complexity 1 23 0 2619 172 23 70 chr11 86536600 86537240 -62246232 + L1MA3 LINE L1 5696 6305 0 345 347 48 48 chr11 86537776 86538166 -62245306 + L1MEd LINE L1 1181 1510 -4862 249 304 24 32 chr11 86538187 86538312 -62245160 + HAL1 LINE L1 1487 1610 -897 25 0 0 0 chr11 86538329 86538354 -62245118 + AT_rich Low_complexity Low_complexity 1 25 0 586 271 121 61 chr11 86539016 86539478 -62243994 + L1MEd LINE L1 2469 2958 -3424 462 302 39 28 chr11 86539859 86540010 -62243462 - MIR SINE MIR -71 191 36 275 83 0 21 chr11 86540010 86540058 -62243414 + (TA)n Simple_repeat Simple_repeat 1 47 0 462 302 39 28 chr11 86540058 86540088 -62243384 - MIR SINE MIR -226 36 8 1267 203 5 0 chr11 86540976 86541198 -62242274 - Tigger3(Golem) DNA MER2_type -2806 223 1 541 143 0 0 chr11 86541748 86541832 -62241640 - AluJ/FLAM SINE Alu -227 85 2 618 235 86 16 chr11 86542943 86543189 -62240283 - L1ME2 LINE L1 -1 6169 5907 541 234 15 15 chr11 86543187 86543324 -62240148 + L1MEc LINE L1 35 171 -6225 * 2958 193 68 3 chr11 86543327 86543918 -62239554 + MER73 LTR ERVL 16 644 0 2907 292 76 30 chr11 86543919 86545494 -62237978 + L1MEc LINE L1 172 1819 -4577 505 228 95 6 chr11 86545520 86545678 -62237794 + L1MC4a LINE L1 7350 7521 -287 268 296 53 29 chr11 86545673 86545879 -62237593 - L1MEc LINE L1 -4072 2324 2114 * 470 297 122 42 chr11 86546424 86546858 -62236614 - L1MC4 LINE L1 -8 8034 7566 351 244 0 12 chr11 86546892 86546974 -62236498 + MLT1E2 LTR MaLR 18 98 -528 4355 162 17 1 chr11 86546974 86547719 -62235753 + Tigger2 DNA MER2_type 1 757 -1961 1376 191 8 8 chr11 86547772 86548018 -62235454 + Tigger2 DNA MER2_type 2473 2718 0 782 271 48 35 chr11 86548018 86548330 -62235142 + MLT1E2 LTR MaLR 97 412 -214 2275 194 84 10 chr11 86548331 86548842 -62234630 + MER54A LTR ERVL 1 350 -294 21 0 0 0 chr11 86548996 86549017 -62234455 + AT_rich Low_complexity Low_complexity 1 21 0 7785 183 18 17 chr11 86549710 86549779 -62233693 - L1 LINE L1 -1294 4852 4785 1056 102 0 13 chr11 86549779 86549936 -62233536 - L1PA8 LINE L1 0 6172 6018 7785 183 18 17 chr11 86549936 86551471 -62232001 - L1 LINE L1 -1361 4785 3246 3438 168 20 62 chr11 86551492 86552663 -62230809 + L1MA5 LINE L1 4887 6012 -288 4084 153 33 34 chr11 86552684 86553351 -62230121 + Tigger3(Golem) DNA MER2_type 2190 2857 -171 1107 162 56 5 chr11 86553351 86553567 -62229905 - MER30 DNA MER1_type 0 230 4 4084 153 33 34 chr11 86553567 86553722 -62229750 + Tigger3(Golem) DNA MER2_type 2857 3011 -17 1883 143 0 3 chr11 86553725 86554018 -62229454 + AluSx SINE Alu 6 297 -15 647 107 0 10 chr11 86554018 86554121 -62229351 + (GGAA)n Simple_repeat Simple_repeat 1 102 0 361 291 98 77 chr11 86554224 86554664 -62228808 - L1MEc LINE L1 -5238 967 519 2422 84 0 3 chr11 86554823 86555143 -62228329 - L1PA10 LINE L1 -369 5799 5481 2569 94 5 5 chr11 86555143 86555513 -62227959 + L1PA10 LINE L1 5793 6163 -5 24 0 0 0 chr11 86555514 86555538 -62227934 + AT_rich Low_complexity Low_complexity 1 24 0 279 296 35 14 chr11 86555637 86555779 -62227693 + L1MC4a LINE L1 5588 5732 -2076 401 266 75 23 chr11 86555786 86556000 -62227472 + L1MC4a LINE L1 5770 5994 -1814 240 267 33 0 chr11 86556463 86556553 -62226919 + (TA)n Simple_repeat Simple_repeat 2 94 0 180 0 0 0 chr11 86557133 86557153 -62226319 + (TTA)n Simple_repeat Simple_repeat 1 20 0 210 260 0 0 chr11 86557465 86557538 -62225934 + (TA)n Simple_repeat Simple_repeat 1 73 0 414 85 0 0 chr11 86558284 86558343 -62225129 + (TC)n Simple_repeat Simple_repeat 2 60 0 422 39 0 0 chr11 86558621 86558673 -62224799 + MADE1 DNA Mariner 29 80 0 2021 124 137 11 chr11 86558799 86559178 -62224294 - MSTA LTR MaLR 0 428 2 2430 229 76 105 chr11 86559287 86559868 -62223604 - L1MC3 LINE L1 -20 7765 7162 303 243 14 0 chr11 86559868 86559938 -62223534 - MLT1F1 LTR MaLR -465 102 32 2430 229 76 105 chr11 86559938 86560451 -62223021 - L1MC3 LINE L1 -623 7162 6636 1004 272 42 0 chr11 86561057 86561340 -62222132 + LTR43 LTR ERV1 186 480 -122 314 357 0 16 chr11 86561975 86562101 -62221371 + L3 LINE CR1 1367 1490 -87 194 316 32 42 chr11 86562222 86562317 -62221155 - MIR3 SINE MIR -28 180 87 247 303 66 40 chr11 86563511 86563663 -62219809 - MIR SINE MIR -41 221 66 28 71 0 0 chr11 86564593 86564649 -62218823 + AT_rich Low_complexity Low_complexity 1 56 0 768 358 104 19 chr11 86566126 86566772 -62216700 + L2 LINE L2 2236 2936 -378 27 29 0 0 chr11 86568526 86568560 -62214912 + AT_rich Low_complexity Low_complexity 1 34 0 35 41 0 0 chr11 86569035 86569084 -62214388 + AT_rich Low_complexity Low_complexity 1 49 0 249 57 0 0 chr11 86569478 86569513 -62213959 + (T)n Simple_repeat Simple_repeat 1 35 0 1283 113 0 0 chr11 86569532 86569700 -62213772 - AluSq SINE Alu -143 170 3 846 189 165 0 chr11 86570833 86571039 -62212433 - MLT1F1 LTR MaLR 0 567 328 494 307 101 5 chr11 86571037 86571226 -62212246 - MLT1F1 LTR MaLR -335 207 1 * 773 196 9 84 chr11 86571735 86571960 -62211512 - MER3 DNA MER1_type -1 208 1 210 373 117 23 chr11 86572332 86572683 -62210789 + L2 LINE L2 2578 2961 -353 255 239 0 0 chr11 86572944 86573011 -62210461 + (TGAA)n Simple_repeat Simple_repeat 3 69 0 2113 113 7 0 chr11 86573849 86574142 -62209330 - AluSc SINE Alu -14 295 1 285 303 94 36 chr11 86574820 86575097 -62208375 - L1MC4a LINE L1 -1903 5905 5613 213 378 61 0 chr11 86575109 86575191 -62208281 + MER91C DNA MER1_type 33 119 -21 447 289 59 13 chr11 86575226 86575378 -62208094 - MIR SINE MIR -25 237 79 330 67 0 0 chr11 86577056 86577101 -62206371 + (GA)n Simple_repeat Simple_repeat 2 46 0 641 253 54 0 chr11 86577642 86577862 -62205610 + FRAM SINE Alu 1 228 0 230 311 98 8 chr11 86578458 86578580 -62204892 + MIR3 SINE MIR 75 207 -1 339 286 11 0 chr11 86578672 86578763 -62204709 - MIR SINE MIR -1 261 170 251 308 159 11 chr11 86579059 86579235 -62204237 - MIR SINE MIR -15 247 40 3119 143 12 0 chr11 86579406 86579897 -62203575 + LOR1a LTR ERV1 1 497 0 353 179 6 122 chr11 86580462 86580618 -62202854 + L1M4 LINE L1 4866 5003 -1143 21 0 0 0 chr11 86580695 86580716 -62202756 + AT_rich Low_complexity Low_complexity 1 21 0 375 23 0 0 chr11 86580822 86580866 -62202606 + (CA)n Simple_repeat Simple_repeat 2 45 0 379 256 23 15 chr11 86581960 86582093 -62201379 + MER63 DNA MER1_type 922 1055 -6 240 133 0 44 chr11 86582099 86582144 -62201328 + Charlie1 DNA MER1_type 2671 2713 -48 1434 218 34 3 chr11 86582168 86582489 -62200983 - L1MA4A LINE L1 -14 6289 5959 * 9374 215 40 76 chr11 86582484 86583000 -62200472 - L1M2 LINE L1 -4150 2699 2166 351 0 0 0 chr11 86583000 86583039 -62200433 + (TTA)n Simple_repeat Simple_repeat 1 39 0 9374 215 40 76 chr11 86583039 86585321 -62198151 - L1M2 LINE L1 -4683 2166 2 200 287 56 37 chr11 86586039 86586147 -62197325 - L2 LINE L2 -251 3062 2953 233 323 25 33 chr11 86586547 86586698 -62196774 + MIR SINE MIR 3 151 -65 520 272 109 0 chr11 86586713 86586860 -62196612 - MER5A DNA MER1_type -26 163 1 866 227 11 35 chr11 86587765 86588025 -62195447 + L1M4 LINE L1 2575 2828 -3318 * 27208 44 46 2 chr11 86588024 86591550 -62191922 + L1P LINE L1 729 4410 -1736 509 308 148 9 chr11 86591547 86591865 -62191607 + L1M4 LINE L1 3510 3871 -2275 * 865 201 118 40 chr11 86591861 86592165 -62191307 + L1M4 LINE L1 4533 4860 -1286 464 236 107 0 chr11 86592166 86592306 -62191166 + L1MA10 LINE L1 6178 6332 -2 392 268 20 71 chr11 86592468 86592627 -62190845 + MIR SINE MIR 6 155 -67 198 296 37 37 chr11 86592679 86592787 -62190685 + MIR SINE MIR 95 202 -60 227 312 11 43 chr11 86592894 86592987 -62190485 - MIR3 SINE MIR -17 191 102 372 286 150 0 chr11 86593848 86593995 -62189477 - MIR SINE MIR -21 241 73 23 68 0 0 chr11 86594053 86594097 -62189375 + AT_rich Low_complexity Low_complexity 1 44 0 451 327 28 38 chr11 86595031 86595349 -62188123 + MLT1H LTR MaLR 234 548 -1 2442 85 43 8 chr11 86595808 86596160 -62187312 + THE1B LTR MaLR 1 364 0 1357 179 28 39 chr11 86597017 86597302 -62186170 + MER7A DNA MER2_type 2 281 -65 506 206 11 0 chr11 86597346 86597438 -62186034 + MER7A DNA MER2_type 245 337 0 287 371 89 30 chr11 86597540 86597742 -62185730 + MIR SINE MIR 6 219 -43 1395 189 60 29 chr11 86597764 86598045 -62185427 + AluJo SINE Alu 4 293 -19 234 0 0 0 chr11 86598045 86598071 -62185401 + (TA)n Simple_repeat Simple_repeat 2 27 0 378 0 0 0 chr11 86598997 86599039 -62184433 + (TG)n Simple_repeat Simple_repeat 2 43 0 458 293 12 144 chr11 86599039 86599295 -62184177 - MIR SINE MIR -3 259 38 273 264 234 15 chr11 86599405 86599558 -62183914 - MIR3 SINE MIR -25 183 2 186 143 0 0 chr11 86599941 86599976 -62183496 + (TTTTTG)n Simple_repeat Simple_repeat 4 38 0 384 336 14 0 chr11 86600623 86600763 -62182709 - MIR SINE MIR -2 260 119 237 33 0 0 chr11 86600765 86600795 -62182677 + (TTA)n Simple_repeat Simple_repeat 1 30 0 284 362 99 23 chr11 86601024 86601245 -62182227 + MIR SINE MIR 25 262 0 236 331 98 33 chr11 86601600 86601784 -62181688 - L2 LINE L2 -672 2642 2447 190 349 136 30 chr11 86601965 86602097 -62181375 - MIR3 SINE MIR -58 150 5 21 0 0 0 chr11 86602286 86602307 -62181165 + AT_rich Low_complexity Low_complexity 1 21 0 265 284 52 43 chr11 86602345 86602461 -62181011 - MIR SINE MIR -98 164 48 2751 285 81 14 chr11 86602764 86603870 -62179602 + L1MEc LINE L1 130 1308 -5088 852 289 46 20 chr11 86603917 86604267 -62179205 + L1MEc LINE L1 1724 2082 -4314 2323 88 3 0 chr11 86605217 86605514 -62177958 - AluSc SINE Alu -11 298 1 303 277 45 27 chr11 86605521 86605633 -62177839 - HAL1 LINE L1 -128 2379 2266 303 290 63 71 chr11 86605660 86605912 -62177560 - HAL1 LINE L1 -346 2161 1912 372 338 22 15 chr11 86605965 86606101 -62177371 - HAL1 LINE L1 -608 1899 1763 534 321 27 42 chr11 86606107 86606369 -62177103 + LTR67 LTR ERVL 5 262 -295 598 314 28 65 chr11 86606631 86607049 -62176423 - HAL1 LINE L1 -1360 1147 743 237 326 98 23 chr11 86607346 86607478 -62175994 - HAL1 LINE L1 -2115 392 251 3361 59 2 0 chr11 86607852 86608273 -62175199 + L1PA5 LINE L1 5621 6042 -112 345 317 67 24 chr11 86608586 86608750 -62174722 + MIR SINE MIR 88 258 -4 220 388 79 12 chr11 86609317 86609482 -62173990 + L2 LINE L2 1155 1330 -1984 246 207 0 35 chr11 86609560 86609618 -62173854 + (TATG)n Simple_repeat Simple_repeat 4 59 0 827 199 82 15 chr11 86609723 86609919 -62173553 - MER3 DNA MER1_type 0 209 1 183 229 83 0 chr11 86609943 86609991 -62173481 + L2 LINE L2 2199 2250 -1064 280 356 25 34 chr11 86610502 86610620 -62172852 + L2 LINE L2 3192 3308 -5 1742 196 5 11 chr11 86611553 86611930 -62171542 - L1MB1 LINE L1 -18 6150 5776 304 255 20 41 chr11 86611938 86612036 -62171436 + L1MC4 LINE L1 6614 6709 -1333 252 144 64 18 chr11 86612072 86612161 -62171311 - L1P5 LINE L1 -355 5796 5698 310 281 56 47 chr11 86612166 86612386 -62171086 - L1MB1 LINE L1 -735 5443 5222 432 220 101 0 chr11 86612390 86612499 -62170973 + L2 LINE L2 3193 3312 -1 1199 292 88 50 chr11 86612574 86613986 -62169486 - L1MB1 LINE L1 -1072 5074 3609 1435 203 58 54 chr11 86614019 86614455 -62169017 + MER31A LTR ERV1 3 455 -11 231 36 0 0 chr11 86614455 86614483 -62168989 + (CA)n Simple_repeat Simple_repeat 2 29 0 562 306 151 43 chr11 86614499 86615214 -62168258 - L1MB1 LINE L1 -2796 3350 2559 243 0 0 0 chr11 86615253 86615280 -62168192 + (TA)n Simple_repeat Simple_repeat 1 27 0 236 193 50 34 chr11 86615297 86615416 -62168056 + (TA)n Simple_repeat Simple_repeat 2 122 0 4700 195 46 66 chr11 86615513 86616058 -62167414 - L1MC3 LINE L1 0 7785 7231 737 122 0 0 chr11 86616058 86616181 -62167291 + L1MA4A LINE L1 6178 6300 -3 4700 195 46 66 chr11 86616181 86616796 -62166676 - L1MC3 LINE L1 -554 7231 6651 432 0 0 0 chr11 86616796 86616844 -62166628 + (TG)n Simple_repeat Simple_repeat 1 48 0 4700 195 46 66 chr11 86616844 86616970 -62166502 - L1MC3 LINE L1 -1134 6651 6524 582 60 24 0 chr11 86617002 86617085 -62166387 - L1PA8 LINE L1 -2 6170 6086 971 90 0 0 chr11 86617085 86617219 -62166253 + L1PA8 LINE L1 5955 6088 -84 1948 234 31 36 chr11 86617226 86617777 -62165695 - L1MC3 LINE L1 -1242 6543 5996 193 357 0 0 chr11 86617780 86617850 -62165622 - L2 LINE L2 -2227 1087 1018 690 297 44 39 chr11 86617858 86618218 -62165254 - L1MEd LINE L1 -5237 1317 956 273 339 144 11 chr11 86618440 86618620 -62164852 - L2 LINE L2 -936 2378 2175 305 331 55 18 chr11 86619337 86619500 -62163972 - MIR SINE MIR -76 186 18 22 35 0 0 chr11 86619739 86619768 -62163704 + AT_rich Low_complexity Low_complexity 1 29 0 365 266 0 7 chr11 86620444 86620583 -62162889 + CT-rich Low_complexity Low_complexity 3 140 0 1159 178 76 188 chr11 86620586 86621124 -62162348 - L1MC3 LINE L1 -1015 6770 6293 * 1227 184 22 4 chr11 86621118 86621346 -62162126 - L1MC3 LINE L1 -535 5798 5567 295 231 0 0 chr11 86621353 86621418 -62162054 - L1MC3 LINE L1 -3457 2689 2625 * 549 223 52 40 chr11 86621411 86621579 -62161893 - L1MCa LINE L1 -5270 894 613 * 1141 202 132 7 chr11 86621578 86621723 -62161749 - L1MA10 LINE L1 -1 6333 6207 348 64 0 0 chr11 86621723 86621770 -62161702 + (TG)n Simple_repeat Simple_repeat 2 48 0 1141 202 132 7 chr11 86621770 86621896 -62161576 - L1MA10 LINE L1 -126 6208 6028 207 266 77 89 chr11 86621896 86622065 -62161407 + MIR SINE MIR 94 260 -2 32 0 0 0 chr11 86622156 86622188 -62161284 + AT_rich Low_complexity Low_complexity 1 32 0 296 319 9 35 chr11 86622319 86622435 -62161037 - MIR3 SINE MIR -22 186 74 51 58 0 0 chr11 86623250 86623336 -62160136 + AT_rich Low_complexity Low_complexity 1 86 0 429 321 135 38 chr11 86624116 86624620 -62158852 - L2 LINE L2 -453 2861 2309 26 0 0 0 chr11 86628113 86628139 -62155333 + AT_rich Low_complexity Low_complexity 1 26 0 1469 198 87 26 chr11 86628554 86628898 -62154574 + MLT1A1 LTR MaLR 1 365 0 1702 125 0 36 chr11 86628938 86629219 -62154253 + AluSc SINE Alu 1 271 -38 248 236 18 0 chr11 86629219 86629274 -62154198 + GA-rich Low_complexity Low_complexity 4 59 0 181 275 65 43 chr11 86629358 86629496 -62153976 - MIR SINE MIR -1 261 121 469 300 96 70 chr11 86629505 86630161 -62153311 + L1ME LINE L1 314 986 -5386 722 263 39 46 chr11 86630182 86630702 -62152770 + L1ME LINE L1 921 1438 -4946 240 308 68 8 chr11 86631304 86631421 -62152051 - MIR SINE MIR 0 262 139 420 271 85 64 chr11 86631623 86631811 -62151661 - MIR SINE MIR -26 236 45 228 222 0 0 chr11 86631848 86631893 -62151579 + (ATG)n Simple_repeat Simple_repeat 1 45 0 199 299 117 0 chr11 86632439 86632516 -62150956 + MIR3 SINE MIR 115 200 -8 197 119 24 0 chr11 86632790 86632832 -62150640 + (TA)n Simple_repeat Simple_repeat 2 44 0 251 320 93 0 chr11 86633488 86633585 -62149887 + MLT1J2 LTR MaLR 40 145 -305 221 234 0 0 chr11 86633692 86633739 -62149733 + CT-rich Low_complexity Low_complexity 2 48 0 1615 219 122 27 chr11 86633819 86634407 -62149065 - LTR48B LTR ERV1 0 644 1 300 303 41 41 chr11 86634676 86634821 -62148651 + L2 LINE L2 2227 2371 -943 35 24 0 0 chr11 86634831 86634873 -62148599 + AT_rich Low_complexity Low_complexity 1 42 0 1231 216 3 54 chr11 86635292 86635589 -62147883 + AluJo SINE Alu 1 282 -30 473 133 10 0 chr11 86636251 86636349 -62147123 + (TA)n Simple_repeat Simple_repeat 1 99 0 246 340 79 35 chr11 86636634 86636864 -62146608 + MIR SINE MIR 8 246 -16 194 0 39 0 chr11 86637222 86637248 -62146224 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1997 168 35 43 chr11 86637796 86638303 -62145169 + MLT2A2 LTR ERVL 1 513 -41 180 0 0 0 chr11 86638303 86638323 -62145149 + (TA)n Simple_repeat Simple_repeat 2 21 0 1997 168 35 43 chr11 86638323 86638355 -62145117 + MLT2A2 LTR ERVL 513 544 -10 1066 243 40 0 chr11 86638433 86638684 -62144788 - MLT1F1 LTR MaLR 0 567 307 683 296 79 34 chr11 86638865 86639345 -62144127 + L1MC4 LINE L1 7285 7876 -166 2569 41 0 0 chr11 86639354 86639668 -62143804 + L1PA5 LINE L1 5840 6153 -1 315 203 0 0 chr11 86639690 86639764 -62143708 + GA-rich Low_complexity Low_complexity 1 74 0 1246 215 19 4 chr11 86639877 86640142 -62143330 - L1MD3 LINE L1 -82 7913 7645 5291 165 8 8 chr11 86640375 86641562 -62141910 - L1PB3 LINE L1 0 6154 4968 200 203 16 62 chr11 86641796 86641860 -62141612 + T-rich Low_complexity Low_complexity 1 61 0 2319 161 34 52 chr11 86641958 86642456 -62141016 + LTR2B LTR ERV1 1 489 -1 2581 123 5 2 chr11 86642457 86642855 -62140617 + Harlequin LTR ERV1 1 399 -6497 * 8098 62 32 31 chr11 86642835 86643993 -62139479 + Harlequin LTR ERV1 263 1421 -5475 5641 47 9 5 chr11 86643981 86644745 -62138727 + Harlequin LTR ERV1 1808 2574 -4322 * 14549 77 12 5 chr11 86644733 86646988 -62136484 + Harlequin LTR ERV1 3340 5710 -1186 673 149 0 25 chr11 86646982 86647103 -62136369 + Harlequin LTR ERV1 6779 6896 0 * 2380 155 30 46 chr11 86647104 86647601 -62135871 + LTR2B LTR ERV1 2 490 0 28 0 0 0 chr11 86648274 86648302 -62135170 + AT_rich Low_complexity Low_complexity 1 28 0 233 310 81 46 chr11 86651294 86651665 -62131807 - L1M4 LINE L1 -3652 2494 2111 21 57 0 0 chr11 86651828 86651863 -62131609 + AT_rich Low_complexity Low_complexity 1 35 0 295 158 13 13 chr11 86652339 86652415 -62131057 + (TA)n Simple_repeat Simple_repeat 2 77 0 232 301 19 0 chr11 86652731 86652834 -62130638 - L1ME1 LINE L1 -16 6150 6046 204 97 0 0 chr11 86654565 86654596 -62128876 + (TG)n Simple_repeat Simple_repeat 2 32 0 24 0 0 0 chr11 86655577 86655601 -62127871 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr11 86656298 86656321 -62127151 + AT_rich Low_complexity Low_complexity 1 23 0 1693 259 112 28 chr11 86656401 86656940 -62126532 - L1ME2 LINE L1 -10 6949 6456 1240 279 83 42 chr11 86656940 86657539 -62125933 + MLT1E2 LTR MaLR 1 624 -2 1693 259 112 28 chr11 86657539 86657906 -62125566 - L1ME2 LINE L1 -503 6456 6121 1145 240 75 45 chr11 86657906 86658306 -62125166 - MER92A LTR ERV1 0 412 1 1693 259 112 28 chr11 86658306 86658522 -62124950 - L1ME2 LINE L1 -838 6121 5737 739 289 20 7 chr11 86658595 86658900 -62124572 - L1ME2 LINE L1 -1371 5570 5262 * 923 304 104 9 chr11 86658884 86659443 -62124029 - L1ME2 LINE L1 -2063 4878 4267 189 74 0 0 chr11 86659548 86659575 -62123897 + (TG)n Simple_repeat Simple_repeat 2 28 0 851 263 47 26 chr11 86659790 86660129 -62123343 - L1ME2 LINE L1 -6047 376 31 1114 294 36 39 chr11 86661520 86661986 -62121486 + L1MCb LINE L1 9 473 -5572 2490 258 56 22 chr11 86662041 86662545 -62120927 - L1M4 LINE L1 -2880 3266 2781 2606 52 0 0 chr11 86662545 86662852 -62120620 - AluY SINE Alu -4 307 1 2490 258 56 22 chr11 86662852 86663464 -62120008 - L1M4 LINE L1 -3365 2781 2112 2203 194 195 116 chr11 86663546 86663708 -62119764 + L1MC3 LINE L1 6274 6422 -1363 1902 139 0 4 chr11 86663708 86663989 -62119483 + AluSg SINE Alu 1 280 -30 2203 194 195 116 chr11 86663989 86664578 -62118894 + L1MC3 LINE L1 6422 7204 -581 307 299 0 0 chr11 86664578 86664655 -62118817 + MLT1F1 LTR MaLR 35 111 -456 2203 194 195 116 chr11 86664655 86664877 -62118595 + L1MC3 LINE L1 7204 7407 -378 1908 75 109 0 chr11 86665050 86665315 -62118157 - AluY SINE Alu -17 294 1 257 253 81 40 chr11 86665454 86665553 -62117919 + LTR48B LTR ERV1 1 103 -541 * 827 214 90 56 chr11 86665526 86665792 -62117680 + MER39 LTR ERV1 261 535 -172 758 180 42 11 chr11 86665869 86666139 -62117333 + L1MC3 LINE L1 7409 7993 -2 247 345 17 26 chr11 86666198 86666314 -62117158 + MIR SINE MIR 27 141 -67 268 306 10 41 chr11 86666816 86666914 -62116558 - MIR SINE MIR -122 140 46 306 0 0 0 chr11 86667050 86667084 -62116388 + (CA)n Simple_repeat Simple_repeat 1 34 0 494 279 97 24 chr11 86667087 86667334 -62116138 + L1MC4 LINE L1 90 354 -6069 651 287 84 2 chr11 86667465 86667768 -62115704 + L1MC4 LINE L1 4774 5097 -1844 559 287 43 9 chr11 86668048 86668278 -62115194 + L1MC4 LINE L1 6110 6347 -2256 8526 233 93 42 chr11 86668326 86669325 -62114147 - L1MC3 LINE L1 -1 8202 7256 1959 146 30 0 chr11 86669325 86669626 -62113846 + AluSx SINE Alu 1 310 -2 8526 233 93 42 chr11 86669626 86674292 -62109180 - L1MC3 LINE L1 -947 7256 2065 1417 223 41 30 chr11 86674292 86674656 -62108816 - MLT1A2 LTR MaLR -4 370 3 8526 233 93 42 chr11 86674656 86676234 -62107238 - L1MC3 LINE L1 -6138 2065 570 5646 139 117 135 chr11 86676260 86677999 -62105473 - pTR5 LTR ERV1 0 2438 732 721 241 40 35 chr11 86678067 86678412 -62105060 + LTR45B LTR ERV1 95 528 -3 228 227 0 30 chr11 86678523 86678589 -62104883 + A-rich Low_complexity Low_complexity 4 67 0 240 271 0 0 chr11 86678673 86678721 -62104751 + LTR4 LTR ERV1 310 357 -239 834 206 65 69 chr11 86678842 86679089 -62104383 + LTR4 LTR ERV1 351 596 0 755 249 66 113 chr11 86679101 86679388 -62104084 - L1MC3 LINE L1 -5539 506 254 4701 172 24 21 chr11 86679388 86680308 -62103164 - MER49 LTR ERV1 0 923 1 755 249 66 113 chr11 86680308 86680551 -62102921 - L1MC3 LINE L1 -5791 254 1 360 286 18 0 chr11 86680566 86680678 -62102794 + L1MC4 LINE L1 6397 6510 -2093 4134 103 79 124 chr11 86680688 86681549 -62101923 - LTR12 LTR ERV1 0 826 5 401 165 0 37 chr11 86681577 86681686 -62101786 - pTR5 LTR ERV1 -1137 1301 1197 * 1693 205 54 50 chr11 86681672 86682193 -62101279 - pTR5 LTR ERV1 -1173 1265 743 3585 254 110 44 chr11 86682193 86683105 -62100367 + L1MC4 LINE L1 6517 7367 -1470 3740 122 39 108 chr11 86683105 86683302 -62100170 + LTR1 LTR ERV1 1 210 -575 2095 119 4 0 chr11 86683302 86683600 -62099872 + AluSg SINE Alu 1 299 0 3740 122 39 108 chr11 86683600 86684244 -62099228 + LTR1 LTR ERV1 210 785 0 3585 254 110 44 chr11 86684244 86685461 -62098011 + L1MC4 LINE L1 7367 8835 -2 397 309 83 26 chr11 86685651 86685881 -62097591 - MIR SINE MIR -14 248 6 192 289 190 16 chr11 86686151 86686272 -62097200 + MIR SINE MIR 50 191 -71 2079 213 123 89 chr11 86686637 86687671 -62095801 - LTR28 LTR ERV1 0 1020 1 34733 182 44 32 chr11 86687672 86694675 -62088797 - LTR28-int LTR ERV1 -1 7090 3 718 241 24 24 chr11 86694675 86694845 -62088627 - LTR28 LTR ERV1 0 1020 851 341 290 145 26 chr11 86694908 86695101 -62088371 + LTR33 LTR ERVL 306 521 0 348 65 0 0 chr11 86695988 86696034 -62087438 - MADE1 DNA Mariner -34 46 1 244 318 0 32 chr11 86696796 86696859 -62086613 - L2 LINE L2 -9 3263 3203 1858 126 0 4 chr11 86697447 86697718 -62085754 + AluSx SINE Alu 42 311 -1 24 32 0 0 chr11 86697796 86697827 -62085645 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr11 86697910 86697936 -62085536 + AT_rich Low_complexity Low_complexity 1 26 0 375 269 77 47 chr11 86698161 86698526 -62084946 - HAL1 LINE L1 -297 2210 1835 1671 224 26 13 chr11 86698754 86699210 -62084262 - L1 LINE L1 -2396 3750 3289 564 211 8 8 chr11 86699216 86699349 -62084123 - Looper DNA T2_type -905 653 521 * 594 221 78 39 chr11 86699348 86699579 -62083893 - Looper DNA T2_type -1317 241 2 22 0 0 0 chr11 86700027 86700049 -62083423 + AT_rich Low_complexity Low_complexity 1 22 0 1018 204 97 36 chr11 86700195 86700474 -62082998 + MER58B DNA MER1_type 46 341 0 276 30 0 0 chr11 86700492 86700525 -62082947 + (TG)n Simple_repeat Simple_repeat 1 33 0 268 353 114 24 chr11 86700874 86701041 -62082431 - MIR SINE MIR -27 235 54 427 285 29 41 chr11 86701436 86701608 -62081864 + L1ME3 LINE L1 5972 6141 -21 2289 103 6 3 chr11 86701934 86702246 -62081226 + AluSp SINE Alu 1 313 0 303 93 0 0 chr11 86702459 86702502 -62080970 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 372 22 0 0 chr11 86702663 86702708 -62080764 + (TG)n Simple_repeat Simple_repeat 1 45 0 348 127 0 0 chr11 86702901 86702956 -62080516 + (A)n Simple_repeat Simple_repeat 1 55 0 193 319 56 42 chr11 86703486 86703558 -62079914 - MER5A DNA MER1_type 0 189 117 341 329 85 37 chr11 86703586 86703750 -62079722 + MIR SINE MIR 20 191 -71 3914 125 25 7 chr11 86703763 86704355 -62079117 - MER4B LTR ERV1 0 610 8 303 351 66 13 chr11 86705082 86705233 -62078239 - MIR SINE MIR -50 212 54 201 381 79 0 chr11 86705278 86705404 -62078068 - L2 LINE L2 0 3272 3137 420 307 147 5 chr11 86705529 86705747 -62077725 - MIR SINE MIR -13 249 1 242 310 63 29 chr11 86705748 86705922 -62077550 - L2 LINE L2 -219 3053 2874 1443 237 10 7 chr11 86706852 86707160 -62076312 - AluJo SINE Alu -3 309 1 293 318 0 0 chr11 86707923 86708008 -62075464 + MER117 DNA MER1_type 66 150 -47 220 333 86 46 chr11 86708120 86708294 -62075178 + MIR3 SINE MIR 21 201 -7 230 400 12 0 chr11 86708810 86708890 -62074582 - L2 LINE L2 -36 3236 3156 229 354 70 32 chr11 86708894 86709052 -62074420 - MIR3 SINE MIR -31 177 14 809 244 53 12 chr11 86709071 86709317 -62074155 - L1ME2 LINE L1 -7 6157 5902 1556 242 50 39 chr11 86709364 86709894 -62073578 - L1ME2 LINE L1 -434 5730 5207 267 31 0 0 chr11 86709894 86709926 -62073546 + (CA)n Simple_repeat Simple_repeat 1 32 0 1556 242 50 39 chr11 86709926 86710131 -62073341 - L1ME2 LINE L1 -957 5207 5006 27 49 0 0 chr11 86710462 86710503 -62072969 + AT_rich Low_complexity Low_complexity 1 41 0 249 33 0 0 chr11 86710681 86710711 -62072761 + (CA)n Simple_repeat Simple_repeat 2 31 0 1857 178 39 12 chr11 86711327 86711664 -62071808 - MER7A DNA MER2_type -1 345 2 243 258 21 21 chr11 86711991 86712088 -62071384 - L1ME LINE L1 -382 5739 5643 197 287 72 81 chr11 86712844 86713053 -62070419 + MIR SINE MIR 6 212 -50 2157 117 7 0 chr11 86713057 86713348 -62070124 + AluSq SINE Alu 1 293 -20 289 300 54 39 chr11 86715050 86715180 -62068292 + L1MC4a LINE L1 6683 6814 -994 26 30 0 0 chr11 86715276 86715309 -62068163 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr11 86715668 86715690 -62067782 + AT_rich Low_complexity Low_complexity 1 22 0 3297 78 2 9 chr11 86716396 86716847 -62066625 + LTR7 LTR ERV1 1 448 -2 14050 118 10 31 chr11 86716849 86719630 -62063842 + HERVH LTR ERV1 1 2995 -4718 867 160 7 0 chr11 86719609 86719759 -62063713 + HERVH LTR ERV1 3140 3290 -4423 * 3389 112 6 6 chr11 86719749 86720251 -62063221 + HERVH LTR ERV1 3492 3993 -3720 1302 94 21 0 chr11 86720253 86720444 -62063028 + HERVH LTR ERV1 4488 4682 -3031 * 6195 84 0 0 chr11 86720428 86721282 -62062190 + HERVH LTR ERV1 5769 6622 -1091 1688 67 11 37 chr11 86721285 86721553 -62061919 + HERVH LTR ERV1 7453 7713 0 3191 75 2 20 chr11 86721553 86722009 -62061463 + LTR7 LTR ERV1 1 448 -2 350 250 107 85 chr11 86722738 86723010 -62060462 + LTR50 LTR ERVL 1 278 -517 282 231 205 0 chr11 86723594 86723711 -62059761 + LTR50 LTR ERVL 655 795 0 184 341 47 12 chr11 86724635 86724720 -62058752 + MIR SINE MIR 40 127 -81 1935 188 63 5 chr11 86726141 86726524 -62056948 - MSTB LTR MaLR -5 421 17 358 294 39 49 chr11 86727266 86727470 -62056002 + L2 LINE L2 3108 3309 -4 21 36 0 0 chr11 86728801 86728829 -62054643 + AT_rich Low_complexity Low_complexity 1 28 0 29 84 0 0 chr11 86730186 86730257 -62053215 + AT_rich Low_complexity Low_complexity 1 71 0 24 0 0 0 chr11 86730431 86730455 -62053017 + AT_rich Low_complexity Low_complexity 1 24 0 1162 250 93 9 chr11 86730469 86731025 -62052447 + MER114 LTR ERV 46 648 0 1899 231 13 7 chr11 86731380 86731838 -62051634 - MER65C LTR ERV1 0 461 1 575 340 48 4 chr11 86733317 86733567 -62049905 + MIR SINE MIR 2 262 0 212 310 78 62 chr11 86733606 86733735 -62049737 + L2 LINE L2 3183 3313 0 2504 63 0 0 chr11 86733919 86734220 -62049252 - AluY SINE Alu -10 301 1 365 281 12 44 chr11 86734885 86735045 -62048427 + MER103 DNA DNA 10 164 -2 311 152 0 15 chr11 86735289 86735355 -62048117 + (TA)n Simple_repeat Simple_repeat 2 66 0 290 122 41 0 chr11 86735391 86735440 -62048032 + MLT1A1 LTR MaLR 9 59 -306 5018 179 34 6 chr11 86735443 86736356 -62047116 + Tigger1 DNA MER2_type 1 939 -1479 1048 151 92 5 chr11 86736356 86736562 -62046910 + LTR26 LTR ERV1 1 224 -379 14765 186 60 12 chr11 86736573 86737093 -62046379 + L1MA1 LINE L1 19 513 -7052 2308 133 3 46 chr11 86737093 86737485 -62045987 + THE1C LTR MaLR 1 375 0 9071 139 59 18 chr11 86737485 86739003 -62044469 + THE1C-int LTR MaLR 1 1580 0 2181 129 13 42 chr11 86739003 86739389 -62044083 + THE1C LTR MaLR 1 375 0 14765 186 60 12 chr11 86739389 86741751 -62041721 + L1MA1 LINE L1 512 3040 -4525 12481 164 25 6 chr11 86741749 86745290 -62038182 + L1MA1 LINE L1 4118 7721 0 * 1706 208 77 0 chr11 86745348 86745699 -62037773 + LTR26 LTR ERV1 226 603 0 * 8703 139 17 24 chr11 86745699 86747191 -62036281 + Tigger1 DNA MER2_type 936 2416 -2 925 232 9 19 chr11 86747191 86747388 -62036084 + MLT1A1 LTR MaLR 167 361 -4 244 281 61 0 chr11 86747582 86747664 -62035808 - L1ME LINE L1 -449 5672 5586 804 274 39 0 chr11 86747873 86748081 -62035391 - MIR SINE MIR -35 227 12 1556 148 60 39 chr11 86748106 86748438 -62035034 - MER44D DNA MER2_type 0 609 1 199 269 96 0 chr11 86749322 86749374 -62034098 + L2 LINE L2 3257 3313 0 21 0 0 0 chr11 86749539 86749560 -62033912 + AT_rich Low_complexity Low_complexity 1 21 0 204 261 50 84 chr11 86750515 86750634 -62032838 + MIR SINE MIR 102 216 -46 507 319 97 9 chr11 86750814 86751030 -62032442 - MIR SINE MIR -21 241 7 227 240 0 0 chr11 86751745 86751795 -62031677 - L2 LINE L2 -1 3312 3263 1230 251 108 26 chr11 86752750 86753252 -62030220 - L1ME3A LINE L1 -6 6164 5622 437 194 58 0 chr11 86753266 86753369 -62030103 - Tigger5 DNA MER2_type 0 2323 2215 291 250 14 0 chr11 86753404 86753476 -62029996 - Tigger5 DNA MER2_type 0 2323 2251 280 211 0 18 chr11 86753444 86753501 -62029971 - Tigger5 DNA MER2_type -2267 56 1 * 776 264 54 14 chr11 86753503 86753798 -62029674 - L1ME3A LINE L1 -553 5609 5303 1264 255 119 60 chr11 86753805 86754369 -62029103 + MLT1E2 LTR MaLR 6 602 -24 239 297 62 27 chr11 86754390 86754649 -62028823 - L1ME3A LINE L1 -841 5305 5038 * 11939 229 33 32 chr11 86754634 86759972 -62023500 - L1PA15 LINE L1 0 6816 1443 1912 294 43 39 chr11 86759939 86760657 -62022815 - L1PA15 LINE L1 -6066 721 1 * 1475 284 77 41 chr11 86760690 86761861 -62021611 - L1ME3A LINE L1 -1122 5024 3802 2296 103 0 0 chr11 86761861 86762162 -62021310 - AluSg SINE Alu -9 301 1 1475 284 77 41 chr11 86762162 86762265 -62021207 - L1ME3A LINE L1 -2344 3802 3704 1060 261 117 6 chr11 86762317 86762830 -62020642 + L1M4 LINE L1 3876 4445 -1701 303 355 86 59 chr11 86763183 86763521 -62019951 - LTR33 LTR ERVL -174 347 1 235 358 105 47 chr11 86764220 86764887 -62018585 + L2 LINE L2 2553 3254 -18 1332 194 160 45 chr11 86764971 86765389 -62018083 + MER31B LTR ERV1 1 466 0 269 335 119 16 chr11 86765681 86765875 -62017597 - L2 LINE L2 -30 3283 3070 27 29 0 0 chr11 86766156 86766190 -62017282 + AT_rich Low_complexity Low_complexity 1 34 0 368 337 40 30 chr11 86766307 86766509 -62016963 - MIR SINE MIR -30 232 29 312 280 76 57 chr11 86766770 86766927 -62016545 - MIR SINE MIR -98 164 5 350 247 13 0 chr11 86767558 86767635 -62015837 + MIR SINE MIR 74 151 -111 2787 149 62 2 chr11 86767981 86768464 -62015008 - MER41E LTR ERV1 0 512 1 475 311 57 34 chr11 86768711 86768920 -62014552 - MIR SINE MIR -31 231 18 401 220 60 0 chr11 86769085 86769185 -62014287 - MIR SINE MIR -48 214 109 1916 148 43 26 chr11 86769203 86769554 -62013918 + MER50 LTR ERV1 1 357 -377 180 313 104 15 chr11 86770818 86770885 -62012587 - MIR SINE MIR -97 111 39 281 291 152 51 chr11 86771379 86771537 -62011935 + MIR SINE MIR 1 174 -88 289 354 57 17 chr11 86771919 86772094 -62011378 - MIR3 SINE MIR -26 182 1 315 363 73 21 chr11 86772970 86773204 -62010268 + MIR SINE MIR 15 260 -2 298 337 12 0 chr11 86773264 86773347 -62010125 - MIR SINE MIR -147 115 32 22 0 0 0 chr11 86774336 86774358 -62009114 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr11 86774652 86774682 -62008790 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr11 86774787 86774809 -62008663 + AT_rich Low_complexity Low_complexity 1 22 0 236 379 65 0 chr11 86774940 86775064 -62008408 - L2 LINE L2 0 3313 3182 442 358 82 28 chr11 86775102 86775502 -62007970 - L2 LINE L2 -481 2833 2412 180 231 0 0 chr11 86776178 86776230 -62007242 + (CA)n Simple_repeat Simple_repeat 2 53 0 1807 150 46 12 chr11 86776625 86776951 -62006521 + MER1B DNA MER1_type 1 337 0 209 87 87 29 chr11 86778172 86778241 -62005231 + (TA)n Simple_repeat Simple_repeat 2 74 0 3699 234 92 73 chr11 86778442 86780481 -62002991 + L1MC4 LINE L1 5953 8042 0 905 126 14 7 chr11 86780535 86780678 -62002794 + AluSg/x SINE Alu 161 304 -8 2166 264 65 14 chr11 86780689 86781408 -62002064 + L1ME1 LINE L1 5411 6166 0 25 95 0 0 chr11 86783118 86783192 -62000280 + AT_rich Low_complexity Low_complexity 1 74 0 205 324 113 0 chr11 86783443 86783514 -61999958 - MIR SINE MIR -92 116 38 198 309 74 25 chr11 86783945 86784026 -61999446 - MIR SINE MIR -13 249 165 279 298 77 0 chr11 86784357 86784461 -61999011 - MIR SINE MIR -86 176 65 387 0 0 0 chr11 86785068 86785111 -61998361 + (CA)n Simple_repeat Simple_repeat 1 43 0 311 315 121 32 chr11 86785121 86785391 -61998081 + L2 LINE L2 2748 3079 -193 494 223 102 30 chr11 86785531 86785697 -61997775 - MER45A DNA AcHobo 0 178 1 180 360 72 14 chr11 86786039 86786178 -61997294 - MIR SINE MIR -6 256 110 423 0 0 0 chr11 86787994 86788041 -61995431 + (CA)n Simple_repeat Simple_repeat 2 48 0 1998 106 17 0 chr11 86789477 86789778 -61993694 + L1MA2 LINE L1 5849 6154 -150 254 346 158 8 chr11 86790423 86790550 -61992922 + L2 LINE L2 3168 3313 0 993 127 13 0 chr11 86791013 86791163 -61992309 - AluSq SINE Alu -28 285 134 249 309 22 22 chr11 86791175 86791311 -61992161 + L1M2 LINE L1 5619 5754 -537 21 57 0 0 chr11 86791365 86791400 -61992072 + AT_rich Low_complexity Low_complexity 1 35 0 207 314 59 29 chr11 86791534 86791636 -61991836 - MER5A DNA MER1_type -26 163 59 426 345 21 19 chr11 86791991 86792189 -61991283 + MIR SINE MIR 9 208 -54 2104 113 6 13 chr11 86792399 86792710 -61990762 + AluSq SINE Alu 1 309 -4 2234 78 0 3 chr11 86793153 86793505 -61989967 - AluY SINE Alu 0 351 1 326 377 14 33 chr11 86793829 86794044 -61989428 - L2 LINE L2 -182 3131 2921 4155 162 22 34 chr11 86794124 86794938 -61988534 + L1MC1 LINE L1 5528 6331 -2 213 363 22 11 chr11 86794994 86795085 -61988387 - MIR SINE MIR -98 110 19 311 331 76 7 chr11 86795327 86795472 -61988000 + MLT1J2 LTR MaLR 67 221 -229 2290 96 0 0 chr11 86795717 86796019 -61987453 + AluY SINE Alu 1 302 -9 1937 165 79 27 chr11 86796281 86796688 -61986784 - MSTA LTR MaLR 0 428 1 28 86 0 0 chr11 86797541 86797611 -61985861 + AT_rich Low_complexity Low_complexity 1 70 0 210 354 0 15 chr11 86798522 86798587 -61984885 + MIR3 SINE MIR 114 177 -31 288 266 65 36 chr11 86798880 86799019 -61984453 - MLT1H LTR MaLR -8 541 399 3839 194 18 41 chr11 86799276 86800134 -61983338 - L1PB4 LINE L1 -1 6155 5318 262 325 59 35 chr11 86800186 86800389 -61983083 - MLT1-int LTR MaLR -17 1354 1147 657 248 47 0 chr11 86801322 86801471 -61982001 + AluJb SINE Alu 134 289 -23 359 298 192 0 chr11 86801795 86801946 -61981526 + MER5A DNA MER1_type 9 188 -1 785 147 38 25 chr11 86802191 86802348 -61981124 + L1MB8 LINE L1 6019 6177 -1 345 100 0 0 chr11 86802928 86802978 -61980494 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 252 0 0 0 chr11 86803554 86803582 -61979890 + (TG)n Simple_repeat Simple_repeat 1 28 0 216 0 0 0 chr11 86803581 86803605 -61979867 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 183 385 42 14 chr11 86803842 86803985 -61979487 + MIR SINE MIR 110 256 -6 23 33 0 0 chr11 86804905 86804935 -61978537 + AT_rich Low_complexity Low_complexity 1 30 0 374 256 143 0 chr11 86805247 86805380 -61978092 + LTR16A1 LTR ERVL 304 455 -2 364 375 17 0 chr11 86805385 86805561 -61977911 + HERV16 LTR ERVL 15 193 -4803 430 252 64 148 chr11 86805707 86806064 -61977408 + MLT1E-int LTR MaLR 957 1283 -88 670 296 22 56 chr11 86806134 86806617 -61976855 + MLT1E LTR MaLR 8 593 0 219 332 116 45 chr11 86806728 86807213 -61976259 + L2 LINE L2 2084 2602 -712 502 330 108 20 chr11 86808356 86808707 -61974765 - MLT1I LTR MaLR -7 402 21 345 368 43 16 chr11 86808721 86808906 -61974566 + MIR SINE MIR 11 200 -62 287 100 20 0 chr11 86808987 86809037 -61974435 + L1MA3 LINE L1 6250 6300 -5 1733 253 46 5 chr11 86809873 86810284 -61973188 - MER74C LTR ERVL -29 431 4 232 225 0 0 chr11 86810783 86810823 -61972649 + (TG)n Simple_repeat Simple_repeat 1 40 0 42604 52 2 2 chr11 86810962 86817103 -61966369 + L1PA4 LINE L1 13 6155 0 1476 218 77 24 chr11 86817604 86817980 -61965492 + MSTD LTR MaLR 1 396 0 254 260 104 0 chr11 86818080 86818157 -61965315 + MIR SINE MIR 58 142 -66 875 226 86 44 chr11 86818285 86818786 -61964686 - L1MDa LINE L1 -4121 2419 1898 948 253 70 53 chr11 86818786 86819312 -61964160 - L1MDa LINE L1 -5085 1458 924 225 0 0 0 chr11 86819951 86819976 -61963496 + (CA)n Simple_repeat Simple_repeat 2 26 0 1875 301 56 24 chr11 86819990 86821632 -61961840 - L1ME LINE L1 -3980 2100 405 198 222 25 12 chr11 86823141 86823222 -61960250 + CT-rich Low_complexity Low_complexity 6 87 0 25 0 0 0 chr11 86823339 86823364 -61960108 + AT_rich Low_complexity Low_complexity 1 25 0 306 0 0 0 chr11 86824794 86824828 -61958644 + (TG)n Simple_repeat Simple_repeat 2 35 0 208 413 16 49 chr11 86825243 86825427 -61958045 - MIR3 SINE MIR -10 198 21 516 273 117 1 chr11 86825923 86826113 -61957359 + MIR SINE MIR 4 218 -44 310 322 61 17 chr11 86827033 86827148 -61956324 + L2 LINE L2 3145 3264 -8 * 356 349 34 7 chr11 86827142 86827291 -61956181 + MIR3 SINE MIR 49 201 -7 318 302 29 65 chr11 86828119 86828258 -61955214 + L1MCb LINE L1 84 217 -5828 394 260 91 7 chr11 86828547 86828613 -61954859 + L1MCb LINE L1 570 629 -5416 1146 231 26 46 chr11 86828613 86828916 -61954556 + AluJb SINE Alu 1 297 -5 394 260 91 7 chr11 86828916 86829003 -61954469 + L1MCb LINE L1 629 736 -5309 1739 212 17 8 chr11 86829035 86829389 -61954083 - MLT1A1 LTR MaLR 0 365 9 556 265 50 12 chr11 86829389 86829677 -61953795 + L1MCb LINE L1 2494 2791 -3773 * 4586 175 50 5 chr11 86829676 86830731 -61952741 - L1PA16 LINE L1 -1 6165 5068 1165 212 8 4 chr11 86830749 86831013 -61952459 + L1PA16 LINE L1 4786 5050 -1096 215 385 28 18 chr11 86831174 86831283 -61952189 + L2 LINE L2 3148 3257 -15 287 318 26 20 chr11 86832422 86832573 -61950899 - L1M4 LINE L1 -3626 2520 2369 1107 111 0 0 chr11 86833250 86833412 -61950060 + L1PA11 LINE L1 6012 6173 -1 269 410 7 48 chr11 86833425 86833720 -61949752 - L2 LINE L2 -667 2647 2365 762 60 0 0 chr11 86834062 86834162 -61949310 + (GA)n Simple_repeat Simple_repeat 2 101 0 21 0 0 0 chr11 86834411 86834432 -61949040 + AT_rich Low_complexity Low_complexity 1 21 0 33 25 0 0 chr11 86834486 86834526 -61948946 + AT_rich Low_complexity Low_complexity 1 40 0 793 229 117 92 chr11 86834564 86835215 -61948257 + L1M4 LINE L1 1044 1710 -4832 1191 278 74 23 chr11 86835292 86836354 -61947118 + L1M4 LINE L1 3416 4609 -2035 2025 228 33 85 chr11 86836381 86837146 -61946326 - L1ME1 LINE L1 -123 6043 5319 956 263 57 20 chr11 86837176 86837699 -61945773 - L1ME1 LINE L1 -1905 4241 3682 2429 59 0 10 chr11 86838382 86838687 -61944785 - AluY SINE Alu -9 302 1 235 247 75 0 chr11 86839713 86839806 -61943666 + L1MDb LINE L1 1175 1274 -5135 * 1058 28 0 4 chr11 86839803 86839939 -61943533 + L1P1 LINE L1 5652 5782 -373 42842 32 23 2 chr11 86839939 86845731 -61937741 + L1HS LINE L1 8 5924 -231 899 209 44 14 chr11 86845834 86846143 -61937329 + L1M1 LINE L1 3522 3848 -3717 581 229 81 5 chr11 86846137 86846347 -61937125 - L1ME LINE L1 -3213 2867 2642 * 314 340 16 11 chr11 86846349 86846540 -61936932 - L1ME LINE L1 -3549 2531 2340 312 238 29 19 chr11 86846541 86846646 -61936826 - L1ME LINE L1 -5922 148 43 293 315 19 28 chr11 86848006 86848114 -61935358 + MIR SINE MIR 45 151 -111 698 254 83 0 chr11 86848286 86848479 -61934993 + MER3 DNA MER1_type 1 209 0 219 139 0 0 chr11 86848839 86848875 -61934597 + (GGGA)n Simple_repeat Simple_repeat 2 37 0 1501 217 39 22 chr11 86849225 86849584 -61933888 - MLT1A1 LTR MaLR 0 365 1 294 284 101 14 chr11 86850004 86850152 -61933320 - L2 LINE L2 -4 3309 3149 262 345 50 43 chr11 86850932 86851071 -61932401 - L2 LINE L2 -6 3266 3127 214 290 43 75 chr11 86852004 86852097 -61931375 - MIR SINE MIR -119 143 54 315 342 92 34 chr11 86852316 86852611 -61930861 + L2 LINE L2 1944 2255 -1059 30 27 0 0 chr11 86853560 86853597 -61929875 + AT_rich Low_complexity Low_complexity 1 37 0 2144 115 3 3 chr11 86853985 86854297 -61929175 - AluSx SINE Alu 0 312 1 576 167 4 3 chr11 86854608 86854726 -61928746 + L1MC3 LINE L1 6862 7013 -772 525 14 40 0 chr11 86854726 86854800 -61928672 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 275 280 84 37 chr11 86854862 86854969 -61928503 + MLT1F1 LTR MaLR 36 147 -420 2283 226 46 9 chr11 86854969 86855514 -61927958 + L1MD3 LINE L1 7424 7988 -7 2755 13 0 0 chr11 86855620 86855925 -61927547 + AluYa8 SINE Alu 1 305 -5 278 356 44 7 chr11 86857212 86857347 -61926125 - L2 LINE L2 -3 3310 3171 303 271 78 52 chr11 86858000 86858192 -61925280 + L1M4 LINE L1 612 808 -5576 210 217 22 0 chr11 86858214 86858260 -61925212 - MIR SINE MIR -10 252 206 238 276 0 13 chr11 86858825 86858901 -61924571 - MIR3 SINE MIR -5 203 129 373 305 39 26 chr11 86859225 86859379 -61924093 - MIR SINE MIR -38 224 69 25001 27 1 1 chr11 86860088 86864003 -61919469 + L1PA3 LINE L1 2237 6152 -3 643 13 0 0 chr11 86864011 86864087 -61919385 - L1P LINE L1 -1812 4334 4259 7106 38 6 6 chr11 86864087 86864959 -61918513 + L1PA4 LINE L1 5282 6153 -2 260 293 12 0 chr11 86864968 86865050 -61918422 + L1MC4a LINE L1 5567 5649 -521 2369 213 4 19 chr11 86865148 86865627 -61917845 + MER70A LTR ERVL 1 472 0 362 292 79 15 chr11 86865630 86865832 -61917640 + L1MC4a LINE L1 5706 5920 -1888 36 0 0 0 chr11 86865947 86865983 -61917489 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chr11 86866205 86866236 -61917236 + AT_rich Low_complexity Low_complexity 1 31 0 828 242 127 57 chr11 86866821 86867403 -61916069 + L1M4 LINE L1 826 1448 -4832 1406 276 170 42 chr11 86867480 86868899 -61914573 + L1M4 LINE L1 3154 4390 -2205 2188 81 17 0 chr11 86868899 86869193 -61914279 + L1PA8 LINE L1 5858 6159 -13 1406 276 170 42 chr11 86869193 86870172 -61913300 + L1M4 LINE L1 4390 5892 -703 492 232 40 0 chr11 86870172 86870297 -61913175 - MER58C DNA MER1_type 0 215 86 257 266 31 0 chr11 86870303 86870367 -61913105 - L1ME LINE L1 -490 5676 5611 913 265 80 46 chr11 86870484 86870960 -61912512 + L1ME1 LINE L1 5469 5960 -206 281 227 5 0 chr11 86871113 86871192 -61912280 + L1ME1 LINE L1 6077 6159 -5 378 250 221 48 chr11 86871220 86871428 -61912044 + L1M4 LINE L1 3834 4077 -2069 343 156 31 0 chr11 86871598 86871662 -61911810 - MLT1K LTR MaLR 0 588 523 191 162 14 40 chr11 86871664 86871738 -61911734 + (TA)n Simple_repeat Simple_repeat 1 72 0 258 216 91 45 chr11 86871976 86872064 -61911408 - MIR SINE MIR -86 176 85 2019 126 14 0 chr11 86872258 86872544 -61910928 + AluSg SINE Alu 1 290 -20 2807 251 42 9 chr11 86874051 86874253 -61909219 - L1ME1 LINE L1 -51 6115 5921 2064 116 0 7 chr11 86874253 86874572 -61908900 - AluSq SINE Alu 0 317 1 2807 251 42 9 chr11 86874572 86875158 -61908314 - L1ME1 LINE L1 -245 5921 5300 659 172 15 0 chr11 86875174 86875308 -61908164 - L1MA6 LINE L1 0 6300 6165 2320 230 36 75 chr11 86875446 86876312 -61907160 - L1ME1 LINE L1 -16 6410 5579 956 262 57 20 chr11 86876342 86876865 -61906607 - L1ME1 LINE L1 -1905 4501 3942 2422 59 0 10 chr11 86877548 86877854 -61905618 - AluY SINE Alu -8 303 1 235 247 75 0 chr11 86878880 86878973 -61904499 + L1MDb LINE L1 1175 1274 -5135 * 1058 28 0 4 chr11 86878970 86879106 -61904366 + L1P1 LINE L1 5652 5782 -373 28979 40 37 2 chr11 86879106 86882762 -61900710 + L1P LINE L1 8 3789 -2357 1245 235 12 12 chr11 86882868 86883196 -61900276 - L1MC4 LINE L1 -510 7532 7205 21 0 0 0 chr11 86883202 86883223 -61900249 + AT_rich Low_complexity Low_complexity 1 21 0 1433 239 78 53 chr11 86883310 86883972 -61899500 - L1ME1 LINE L1 -4988 1421 790 5385 79 5 74 chr11 86884927 86885791 -61897681 - L1PA8 LINE L1 -4 6168 5365 196 299 142 15 chr11 86885865 86885999 -61897473 - L2 LINE L2 -559 2755 2605 1741 242 39 18 chr11 86886000 86886310 -61897162 + MLT1D LTR MaLR 2 327 -178 298 71 0 36 chr11 86886310 86886366 -61897106 + (CAAAA)n Simple_repeat Simple_repeat 3 56 0 1741 242 39 18 chr11 86886366 86886543 -61896929 + MLT1D LTR MaLR 327 499 -6 251 269 32 0 chr11 86886826 86886919 -61896553 + L1M4 LINE L1 2937 3032 -3114 1205 340 5 23 chr11 86886932 86887362 -61896110 + L1MA7 LINE L1 1533 1954 -5532 264 387 27 0 chr11 86887601 86887751 -61895721 + L1MA7 LINE L1 2078 2231 -5255 8738 229 39 9 chr11 86887966 86889926 -61893546 + L1MA7 LINE L1 2972 5043 -2522 1973 131 0 14 chr11 86889926 86890251 -61893221 + AluSx SINE Alu 4 324 0 8738 229 39 9 chr11 86890251 86890983 -61892489 + L1MA7 LINE L1 5043 5751 -1814 25 0 0 0 chr11 86890984 86891009 -61892463 + AT_rich Low_complexity Low_complexity 1 25 0 1493 207 10 7 chr11 86891009 86891308 -61892164 - AluJo SINE Alu -12 300 1 4860 171 29 22 chr11 86891410 86892437 -61891035 + L1MA7 LINE L1 6674 7707 -3 306 249 90 16 chr11 86892433 86892622 -61890850 + L1M4 LINE L1 2988 3190 -2956 * 2266 35 11 18 chr11 86892757 86893059 -61890413 + AluY SINE Alu 1 300 0 183 42 0 0 chr11 86893349 86893373 -61890099 + (TG)n Simple_repeat Simple_repeat 1 24 0 905 193 27 5 chr11 86893878 86894065 -61889407 - L1MB1 LINE L1 -1 6167 5977 1644 181 36 38 chr11 86894066 86894614 -61888858 + L1M3 LINE L1 5073 5626 -542 3657 190 68 1 chr11 86894619 86895408 -61888064 - L1MD1 LINE L1 0 6242 5401 1526 214 129 39 chr11 86895682 86896140 -61887332 + MLT1D LTR MaLR 1 499 -6 303 323 11 0 chr11 86896238 86896331 -61887141 + L2 LINE L2 3220 3313 0 212 330 0 66 chr11 86896361 86896452 -61887020 - L2 LINE L2 -8 3264 3180 318 311 74 8 chr11 86896581 86896703 -61886769 - L2 LINE L2 -225 3047 2918 618 236 72 19 chr11 86896890 86897098 -61886374 + L1MC4 LINE L1 7694 7912 -130 1113 93 0 33 chr11 86897213 86897396 -61886076 + L1PA13 LINE L1 5982 6158 -5 228 346 121 10 chr11 86897398 86897592 -61885880 + MIR SINE MIR 22 235 -27 1782 329 73 5 chr11 86897798 86898573 -61884899 + HAL1 LINE L1 2 829 -1678 233 300 73 98 chr11 86898583 86898746 -61884726 - L2 LINE L2 -2162 1152 986 6949 63 7 0 chr11 86898746 86899668 -61883804 + L1PA7 LINE L1 5227 6154 0 233 300 73 98 chr11 86899668 86899931 -61883541 - L2 LINE L2 -2328 986 737 482 243 94 17 chr11 86899932 86900113 -61883359 - MLT1K LTR MaLR -22 566 372 2336 88 0 0 chr11 86900562 86900882 -61882590 - L1PB2 LINE L1 -246 5905 5586 3359 183 54 6 chr11 86900884 86901606 -61881866 + L1 LINE L1 4322 5078 -1068 10548 15 0 0 chr11 86902135 86904145 -61879327 + L1HS LINE L1 4146 6155 0 408 88 0 0 chr11 86904259 86904316 -61879156 + (TA)n Simple_repeat Simple_repeat 1 57 0 811 255 108 12 chr11 86904495 86904820 -61878652 - L1M4 LINE L1 -1307 4839 4484 3131 19 0 3 chr11 86904889 86905304 -61878168 + L1PA2 LINE L1 5770 6183 0 234 267 0 56 chr11 86905420 86905510 -61877962 + L1M1 LINE L1 2817 2901 -4664 230 255 133 58 chr11 86905665 86906041 -61877431 + L1ME3A LINE L1 1863 2266 -4130 318 260 10 10 chr11 86906105 86906201 -61877271 + L1ME3A LINE L1 5764 5859 -331 515 250 20 0 chr11 86906207 86906359 -61877113 + L1ME3A LINE L1 5903 6057 -182 3665 202 22 13 chr11 86906818 86907688 -61875784 - L1 LINE L1 -794 5352 4475 5166 221 25 5 chr11 86907715 86908999 -61874473 + L1MEc LINE L1 3208 4517 -1698 245 305 74 0 chr11 86909842 86909937 -61873535 - MIR SINE MIR -65 143 42 182 344 115 8 chr11 86910085 86910207 -61873265 + MIR3 SINE MIR 7 141 -67 380 304 114 11 chr11 86910755 86910939 -61872533 - MIR SINE MIR -40 222 20 1399 186 10 55 chr11 86911035 86911325 -61872147 + AluJo SINE Alu 15 291 -21 991 325 87 32 chr11 86911336 86911828 -61871644 - LTR33 LTR ERVL 0 521 3 198 0 0 0 chr11 86912217 86912239 -61871233 + (TTA)n Simple_repeat Simple_repeat 3 24 0 4325 71 4 9 chr11 86912239 86912802 -61870670 - L1PA7 LINE L1 -23 6131 5572 225 0 0 0 chr11 86913070 86913095 -61870377 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 7614 21 0 0 chr11 86913097 86914374 -61869098 - L1PA3 LINE L1 -5 6150 4871 10247 38 3 0 chr11 86914376 86915632 -61867840 + L1PA3 LINE L1 3630 4889 -1257 754 270 19 0 chr11 86915639 86915798 -61867674 + MER5A DNA MER1_type 27 188 -1 216 292 28 28 chr11 86915936 86916008 -61867464 - L2 LINE L2 0 3313 3242 239 164 16 33 chr11 86917241 86917302 -61866170 + T-rich Low_complexity Low_complexity 3 62 0 850 241 203 11 chr11 86917388 86917694 -61865778 - L1MD2 LINE L1 -14 6345 5967 189 197 66 118 chr11 86918866 86918942 -61864530 + MIR3 SINE MIR 132 203 -5 461 311 62 29 chr11 86919503 86919747 -61863725 + MIR SINE MIR 11 262 0 386 286 34 8 chr11 86920515 86920634 -61862838 + MIR SINE MIR 51 172 -90 235 295 21 21 chr11 86922926 86923021 -61860451 - MLT1H LTR MaLR -369 180 86 334 186 0 0 chr11 86923789 86923848 -61859624 + MSTC LTR MaLR 1 59 -369 718 199 71 20 chr11 86923871 86924067 -61859405 - Tigger7 DNA MER2_type -32 2459 2254 294 73 0 0 chr11 86924067 86924108 -61859364 + (TC)n Simple_repeat Simple_repeat 2 42 0 366 309 66 7 chr11 86924203 86924355 -61859117 + HERVL LTR ERVL 4454 4614 -1040 321 186 0 0 chr11 86924509 86924568 -61858904 - Tigger5 DNA MER2_type -10 2313 2255 7255 66 17 22 chr11 86924568 86926424 -61857048 + SVA Other Other 1 1443 0 253 355 132 18 chr11 86926491 86926711 -61856761 + HERVL LTR ERVL 4926 5170 -484 406 112 11 112 chr11 86927217 86927306 -61856166 - MADE1 DNA Mariner 0 80 1 216 0 0 0 chr11 86927797 86927821 -61855651 + (TTTTG)n Simple_repeat Simple_repeat 5 28 0 213 185 25 37 chr11 86927874 86927955 -61855517 + CT-rich Low_complexity Low_complexity 2 81 0 22 56 0 0 chr11 86928851 86928887 -61854585 + AT_rich Low_complexity Low_complexity 1 36 0 300 238 0 0 chr11 86929554 86929638 -61853834 + (TG)n Simple_repeat Simple_repeat 2 85 0 275 274 41 0 chr11 86929799 86929872 -61853600 - L2 LINE L2 -7 3306 3231 298 283 40 59 chr11 86929887 86930039 -61853433 - MIR SINE MIR -72 136 6 605 266 112 0 chr11 86930180 86930349 -61853123 - MIR SINE MIR -21 241 54 231 271 0 0 chr11 86930731 86930779 -61852693 + MLT1H LTR MaLR 431 478 -71 3226 110 12 14 chr11 86930802 86931311 -61852161 - L1PA13 LINE L1 -19 6144 5637 276 30 0 0 chr11 86931660 86931693 -61851779 + (CA)n Simple_repeat Simple_repeat 2 34 0 397 274 37 55 chr11 86932588 86932752 -61850720 - MIR SINE MIR 0 262 102 231 296 9 56 chr11 86933660 86933768 -61849704 + MIR SINE MIR 116 218 -44 294 244 67 104 chr11 86933795 86933988 -61849484 + L2 LINE L2 3123 3308 -5 243 319 60 32 chr11 86934735 86934920 -61848552 - L2 LINE L2 -221 3051 2862 316 174 83 83 chr11 86935035 86935156 -61848316 - MIR SINE MIR -123 139 19 180 412 50 27 chr11 86935820 86936082 -61847390 - L2 LINE L2 -84 3188 2921 269 203 0 0 chr11 86936144 86936208 -61847264 - MLT1H LTR MaLR 0 549 479 285 346 138 56 chr11 86936587 86937159 -61846313 - L2 LINE L2 -466 2848 2230 878 182 119 0 chr11 86937162 86937338 -61846134 + L1PB4 LINE L1 5952 6148 -8 1261 185 138 14 chr11 86937872 86938169 -61845303 - MER44D DNA MER2_type 0 609 6 238 268 61 24 chr11 86938522 86938604 -61844868 + L2 LINE L2 3229 3313 0 207 296 99 0 chr11 86939902 86939973 -61843499 + L2 LINE L2 3194 3271 -1 256 387 81 30 chr11 86940174 86940471 -61843001 - L2 LINE L2 -553 2761 2450 451 192 0 0 chr11 86941113 86941186 -61842286 - L2 LINE L2 -17 3296 3224 234 372 0 0 chr11 86941551 86941629 -61841843 - L2 LINE L2 -9 3304 3227 421 299 27 54 chr11 86942199 86942383 -61841089 - MIR SINE MIR 0 262 84 1997 95 4 0 chr11 86942789 86943063 -61840409 + L1PB4 LINE L1 5869 6143 -13 872 244 19 14 chr11 86943112 86943325 -61840147 - MIR SINE MIR -21 241 28 200 279 0 0 chr11 86943423 86943466 -61840006 - MIR SINE MIR -11 251 209 2064 137 7 0 chr11 86943574 86943874 -61839598 + AluSx SINE Alu 5 306 -6 962 173 4 0 chr11 86943878 86944102 -61839370 + GA-rich Low_complexity Low_complexity 1 224 0 297 323 145 27 chr11 86944133 86944319 -61839153 - MIR SINE MIR -32 230 23 255 284 47 88 chr11 86945452 86945600 -61837872 - MIR SINE MIR -72 190 49 1856 162 32 12 chr11 86945750 86946090 -61837382 - MER7A DNA MER2_type -1 345 1 489 313 50 35 chr11 86946750 86947150 -61836322 + L1ME4a LINE L1 5513 5918 -203 856 188 81 0 chr11 86947467 86947627 -61835845 - AluJb SINE Alu -2 310 138 466 279 133 49 chr11 86949290 86949614 -61833858 + L1MEc LINE L1 807 1187 -1389 670 234 122 9 chr11 86949614 86949828 -61833644 - MLT1C LTR MaLR -229 238 1 1683 142 64 8 chr11 86950221 86950511 -61832961 - AluSx SINE Alu 0 307 3 392 297 187 10 chr11 86950738 86950947 -61832525 + MIR SINE MIR 5 250 -12 243 289 61 61 chr11 86951425 86951622 -61831850 + MLT1L LTR MaLR 2 198 -417 610 238 33 0 chr11 86951648 86951770 -61831702 + MER45A DNA AcHobo 53 178 0 543 318 66 66 chr11 86952163 86952648 -61830824 + MLT1J LTR MaLR 27 511 0 2799 128 25 56 chr11 86952906 86953474 -61829998 + L1MA8 LINE L1 5742 6291 0 1394 211 7 14 chr11 86953476 86953755 -61829717 + AluJb SINE Alu 1 277 -35 459 0 0 0 chr11 86953764 86953815 -61829657 + (TAAAA)n Simple_repeat Simple_repeat 3 53 0 223 320 160 24 chr11 86954516 86954641 -61828831 + L2 LINE L2 3121 3262 -10 32 81 0 0 chr11 86956204 86956278 -61827194 + AT_rich Low_complexity Low_complexity 1 74 0 1911 168 18 5 chr11 86956895 86957282 -61826190 - L1MA9 LINE L1 -5 6307 5916 2076 145 14 3 chr11 86957284 86957635 -61825837 + HSMAR2 DNA Mariner 7 361 -941 525 81 0 0 chr11 86957681 86957755 -61825717 + HSMAR2 DNA Mariner 1005 1078 -224 5574 152 12 9 chr11 86957756 86958658 -61824814 + HSMAR2 DNA Mariner 360 1264 -38 1415 210 0 8 chr11 86958675 86958942 -61824530 - AluJo SINE Alu -35 277 13 261 222 14 9 chr11 86958965 86959041 -61824431 - L1MA9 LINE L1 -342 5949 5873 188 189 0 0 chr11 86959214 86959251 -61824221 - L2 LINE L2 0 3313 3277 885 289 54 43 chr11 86959314 86959663 -61823809 - LTR16A LTR ERVL -63 387 35 23 33 0 0 chr11 86959730 86959760 -61823712 + AT_rich Low_complexity Low_complexity 1 30 0 649 326 81 25 chr11 86960150 86960679 -61822793 - HERV16 LTR ERVL -3142 1854 1229 383 300 67 11 chr11 86961404 86961584 -61821888 - HERV16 LTR ERVL -4540 456 267 23 0 0 0 chr11 86962311 86962334 -61821138 + AT_rich Low_complexity Low_complexity 1 23 0 271 283 117 33 chr11 86962340 86962460 -61821012 - MIR SINE MIR -13 249 120 362 313 200 0 chr11 86962493 86962608 -61820864 + L2 LINE L2 3134 3271 -1 22 0 0 0 chr11 86962865 86962887 -61820585 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 86963515 86963536 -61819936 + AT_rich Low_complexity Low_complexity 1 21 0 2126 110 0 0 chr11 86963669 86963971 -61819501 - AluSg SINE Alu 0 302 1 290 289 70 49 chr11 86963991 86964133 -61819339 + MIR3 SINE MIR 23 167 -41 192 368 59 20 chr11 86964606 86964758 -61818714 - MER5A DNA MER1_type -28 161 4 197 346 46 54 chr11 86964876 86965006 -61818466 - L2 LINE L2 -5 3267 3139 672 260 34 25 chr11 86965271 86965582 -61817890 - L1M4c LINE L1 -3800 2582 2268 26 30 0 0 chr11 86965602 86965635 -61817837 + AT_rich Low_complexity Low_complexity 1 33 0 2873 194 42 8 chr11 86965635 86966274 -61817198 - L1MB1 LINE L1 -1 6167 5507 263 200 71 12 chr11 86966302 86966387 -61817085 - L1MC4 LINE L1 -1339 6703 6614 205 250 21 0 chr11 86966387 86966435 -61817037 + (TG)n Simple_repeat Simple_repeat 1 49 0 1568 170 34 11 chr11 86966443 86966852 -61816620 - L1MB1 LINE L1 -697 5471 5057 * 1798 262 46 40 chr11 86966850 86967498 -61815974 - L1M4c LINE L1 -3340 3617 2966 204 215 0 54 chr11 86967516 86967609 -61815863 + T-rich Low_complexity Low_complexity 6 93 0 2008 266 85 62 chr11 86967619 86968365 -61815107 - L1M4c LINE L1 -3994 2965 2235 2355 68 3 0 chr11 86968365 86968676 -61814796 - L1PA13 LINE L1 -4 6159 5848 2008 266 85 62 chr11 86968676 86969378 -61814094 - L1M4c LINE L1 -4724 2235 1551 22 70 0 0 chr11 86969383 86969426 -61814046 + AT_rich Low_complexity Low_complexity 1 43 0 2113 329 22 11 chr11 86970323 86971082 -61812390 - L1M4c LINE L1 -6073 786 19 187 348 147 32 chr11 86971101 86971719 -61811753 - L2 LINE L2 -1201 2113 1425 287 227 216 48 chr11 86972094 86972224 -61811248 - MIR SINE MIR -58 150 1 341 115 0 0 chr11 86972264 86972316 -61811156 - MADE1 DNA Mariner 0 80 29 1414 192 39 7 chr11 86972386 86972672 -61810800 - AluJb SINE Alu -17 295 1 482 277 66 97 chr11 86972673 86972962 -61810510 + MER102b DNA MER1_type 62 341 0 439 227 76 38 chr11 86973469 86973601 -61809871 + MIR3 SINE MIR 39 175 -33 486 322 62 18 chr11 86976311 86976538 -61806934 + MIR SINE MIR 5 241 -21 204 40 0 0 chr11 86977322 86977347 -61806125 + (TCC)n Simple_repeat Simple_repeat 1 25 0 366 23 0 0 chr11 86977513 86977556 -61805916 + (CA)n Simple_repeat Simple_repeat 2 44 0 705 267 44 15 chr11 86978056 86978262 -61805210 - MIR SINE MIR -28 234 23 220 352 133 8 chr11 86978413 86978541 -61804931 + L2 LINE L2 3170 3313 0 1909 201 39 45 chr11 86978606 86979114 -61804358 - MLT1D LTR MaLR 0 505 1 197 271 68 68 chr11 86979570 86979688 -61803784 - MIR SINE MIR -42 220 103 21 0 0 0 chr11 86979744 86979765 -61803707 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr11 86979974 86980009 -61803463 + AT_rich Low_complexity Low_complexity 1 35 0 1623 189 32 35 chr11 86980179 86980582 -61802890 - L1MB7 LINE L1 0 6184 5783 348 296 15 15 chr11 86980592 86980727 -61802745 + GA-rich Low_complexity Low_complexity 1 135 0 302 321 50 44 chr11 86981132 86981291 -61802181 - L3 LINE CR1 -11 1566 1407 639 289 25 15 chr11 86981297 86981383 -61802089 + MIR SINE MIR 21 105 -157 1657 174 33 90 chr11 86981383 86981807 -61801665 + MER57A LTR ERV1 3 402 -1 639 289 25 15 chr11 86981807 86981917 -61801555 + MIR SINE MIR 105 219 -43 359 241 12 62 chr11 86981922 86982057 -61801415 + MER34 LTR ERV1 1 116 -426 332 96 68 0 chr11 86982356 86982429 -61801043 - L1PA12 LINE L1 -4226 3358 3281 1232 14 0 0 chr11 86982501 86982641 -61800831 + L1PA5 LINE L1 5753 5892 -262 * 4399 241 37 73 chr11 86982638 86984939 -61798533 - L1PA12 LINE L1 -4288 3296 1 21 0 0 0 chr11 86985634 86985655 -61797817 + AT_rich Low_complexity Low_complexity 1 21 0 810 29 10 0 chr11 86985829 86985932 -61797540 + L1PA4 LINE L1 6051 6154 -1 186 305 86 29 chr11 86985967 86986072 -61797400 + MIR SINE MIR 82 192 -70 5467 135 32 17 chr11 86986400 86987608 -61795864 - L1PA13 LINE L1 0 6163 4928 199 222 0 37 chr11 86987621 86987675 -61795797 + MIR SINE MIR 81 132 -76 391 347 9 42 chr11 86988168 86988381 -61795091 + MLT1H LTR MaLR 96 301 -248 1234 235 59 3 chr11 86988385 86988726 -61794746 - L1ME LINE L1 -551 5613 5254 189 0 0 0 chr11 86988753 86988774 -61794698 + (TG)n Simple_repeat Simple_repeat 2 22 0 585 262 115 18 chr11 86988806 86989146 -61794326 - L1M4 LINE L1 -5043 1499 1127 25 0 0 0 chr11 86989543 86989568 -61793904 + AT_rich Low_complexity Low_complexity 1 25 0 372 322 28 44 chr11 86990197 86990377 -61793095 - MIR3 SINE MIR -13 195 19 23 54 0 0 chr11 86991195 86991232 -61792240 + AT_rich Low_complexity Low_complexity 1 37 0 246 180 0 66 chr11 86991234 86991295 -61792177 - MER50 LTR ERV1 -89 645 589 1723 258 101 36 chr11 86991410 86992076 -61791396 + L1M3e LINE L1 7 715 -6315 1653 180 83 9 chr11 86992084 86992628 -61790844 + L1MA9 LINE L1 4969 5538 -633 794 143 33 154 chr11 86992596 86992868 -61790604 + L1MA9 LINE L1 6044 6282 -30 * 3184 208 9 12 chr11 86992868 86993535 -61789937 + L1MB2 LINE L1 5480 6144 -27 273 109 0 0 chr11 86993540 86993586 -61789886 + (CA)n Simple_repeat Simple_repeat 1 46 0 1044 289 68 27 chr11 86993721 86994430 -61789042 + L1MC/D LINE L1 5015 5749 -747 2107 121 0 0 chr11 86996794 86997101 -61786371 + AluSx SINE Alu 1 307 -5 186 359 16 16 chr11 86997409 86997473 -61785999 + L2 LINE L2 3123 3186 -86 305 237 13 0 chr11 86997498 86997574 -61785898 + MLT1L LTR MaLR 144 220 -395 25 31 0 0 chr11 86997864 86997896 -61785576 + AT_rich Low_complexity Low_complexity 1 32 0 699 203 42 10 chr11 86997981 86998215 -61785257 - L1M LINE L1 -745 5401 5186 1908 180 45 29 chr11 86998219 86998638 -61784834 - L1MC3 LINE L1 -8 7777 7349 201 74 0 0 chr11 86998638 86998665 -61784807 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1908 180 45 29 chr11 86998665 86998689 -61784783 - L1MC3 LINE L1 -436 7349 7327 957 184 45 57 chr11 86998686 86998931 -61784541 + L1MC3 LINE L1 7084 7325 -460 * 180 373 119 20 chr11 86999019 86999271 -61784201 - L2 LINE L2 -1 3271 2995 3264 150 107 5 chr11 86999273 86999880 -61783592 - LTR51 LTR ERV1 -2 669 1 184 231 0 0 chr11 87000391 87000430 -61783042 - MIR SINE MIR -61 201 163 1492 240 72 74 chr11 87000742 87001367 -61782105 - MLT1E3 LTR MaLR 0 624 1 292 320 114 17 chr11 87001652 87001827 -61781645 - L2 LINE L2 -9 3304 3113 1248 219 51 70 chr11 87002800 87003174 -61780298 - MLT1E3 LTR MaLR 0 624 258 308 263 25 59 chr11 87003198 87003316 -61780156 - MLT1E3 LTR MaLR -516 138 25 652 229 30 103 chr11 87003320 87003582 -61779890 - L1ME LINE L1 -555 5543 5301 869 262 116 36 chr11 87003585 87004085 -61779387 - L1ME LINE L1 -968 5112 4573 327 280 23 38 chr11 87004101 87004233 -61779239 - L1ME LINE L1 -5938 132 3 206 105 26 0 chr11 87005319 87005357 -61778115 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2174 93 4 0 chr11 87005382 87005662 -61777810 - AluSp SINE Alu -30 283 3 1042 323 107 15 chr11 87005683 87006331 -61777141 + L2 LINE L2 2577 3312 -1 1385 188 31 38 chr11 87006690 87006983 -61776489 + AluJo SINE Alu 1 291 -21 24 0 0 0 chr11 87007005 87007029 -61776443 + AT_rich Low_complexity Low_complexity 1 24 0 3440 261 120 39 chr11 87007728 87010575 -61772897 - L1ME2 LINE L1 -10 6154 3052 1590 194 50 136 chr11 87010604 87011119 -61772353 + MER70A LTR ERVL 2 472 0 690 295 50 3 chr11 87011120 87011418 -61772054 - L1ME2 LINE L1 -3147 2999 2688 323 347 72 70 chr11 87011421 87011966 -61771506 + ERVL LTR ERVL 4711 5256 -508 26 0 0 0 chr11 87012812 87012838 -61770634 + AT_rich Low_complexity Low_complexity 1 26 0 357 316 57 13 chr11 87013193 87013351 -61770121 + L3 LINE CR1 1073 1237 -340 337 325 31 99 chr11 87013432 87013814 -61769658 + L2 LINE L2 2953 3308 -5 202 266 180 31 chr11 87013867 87013995 -61769477 + L3 LINE CR1 1321 1467 -110 261 0 0 0 chr11 87014017 87014046 -61769426 + (TG)n Simple_repeat Simple_repeat 2 30 0 2229 181 31 2 chr11 87014813 87015227 -61768245 + MSTB LTR MaLR 1 426 0 24 0 0 0 chr11 87015876 87015900 -61767572 + AT_rich Low_complexity Low_complexity 1 24 0 184 355 23 64 chr11 87017049 87017221 -61766251 + L2 LINE L2 2906 3070 -202 2080 114 0 4 chr11 87017844 87018151 -61765321 + AluSg SINE Alu 1 306 0 2236 93 30 0 chr11 87018593 87018893 -61764579 + AluSx SINE Alu 1 309 -3 225 0 0 0 chr11 87019062 87019087 -61764385 + (A)n Simple_repeat Simple_repeat 1 25 0 187 306 104 28 chr11 87019235 87019379 -61764093 - MIR SINE MIR -50 212 58 598 335 28 9 chr11 87019636 87019854 -61763618 - MIR SINE MIR -32 230 9 724 233 142 22 chr11 87019894 87020126 -61763346 + MIR SINE MIR 3 262 0 231 359 165 0 chr11 87021268 87021480 -61761992 + MIR SINE MIR 1 247 -15 7846 30 0 0 chr11 87021999 87022943 -61760529 - L1P LINE L1 -872 5274 4331 4680 65 0 0 chr11 87022942 87023560 -61759912 + L1P LINE L1 964 1581 -4565 * 2313 88 0 7 chr11 87073707 87074004 -61709468 - AluSc SINE Alu -14 295 1 2336 202 19 42 chr11 87074122 87074651 -61708821 - L1M3e LINE L1 -6463 567 51 2136 112 3 3 chr11 87075012 87075324 -61708148 - AluSx SINE Alu 0 312 1 583 167 4 3 chr11 87075635 87075753 -61707719 + L1MC3 LINE L1 6862 7013 -772 525 14 40 0 chr11 87075753 87075827 -61707645 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 277 280 84 37 chr11 87075889 87075996 -61707476 + MLT1F1 LTR MaLR 36 147 -420 2319 226 46 9 chr11 87075996 87076541 -61706931 + L1MD3 LINE L1 7424 7988 -7 2764 7 0 0 chr11 87076647 87076952 -61706520 + AluYa8 SINE Alu 1 305 -5 275 356 44 7 chr11 87078311 87078446 -61705026 - L2 LINE L2 -3 3310 3171 304 271 78 52 chr11 87079099 87079291 -61704181 + L1M4c LINE L1 612 808 -5576 210 217 22 0 chr11 87079313 87079359 -61704113 - MIR SINE MIR -10 252 206 243 276 0 13 chr11 87079924 87080000 -61703472 - MIR3 SINE MIR -5 203 129 381 305 39 26 chr11 87080324 87080478 -61702994 - MIR SINE MIR -38 224 69 675 177 23 8 chr11 87081116 87081246 -61702226 - MLT1D-int LTR MaLR -1238 133 2 217 311 23 90 chr11 87081247 87081424 -61702048 + L2 LINE L2 2434 2598 -716 1744 242 39 18 chr11 87081440 87081617 -61701855 - MLT1D LTR MaLR -6 499 327 298 71 0 36 chr11 87081617 87081673 -61701799 + (TTTTG)n Simple_repeat Simple_repeat 3 56 0 1744 242 39 18 chr11 87081673 87081983 -61701489 - MLT1D LTR MaLR -178 327 2 197 299 142 15 chr11 87081984 87082118 -61701354 + L2 LINE L2 2605 2755 -559 795 142 13 17 chr11 87082150 87082320 -61701152 + L1P3 LINE L1 5320 5491 -681 325 273 27 0 chr11 87082422 87082532 -61700940 - L1 LINE L1 -961 5185 5073 912 193 27 5 chr11 87082533 87082720 -61700752 + L1MB1 LINE L1 5977 6167 -1 183 42 0 0 chr11 87083225 87083249 -61700223 + (CA)n Simple_repeat Simple_repeat 1 24 0 2216 35 11 18 chr11 87083539 87083841 -61699631 - AluY SINE Alu 0 300 1 331 249 90 16 chr11 87083976 87084165 -61699307 - L1 LINE L1 -2956 3190 2988 * 4998 180 34 14 chr11 87084161 87086086 -61697386 - L1MA7 LINE L1 -3 6288 4322 2283 95 0 0 chr11 87086081 87086397 -61697075 + L1PB2 LINE L1 5579 5894 -257 * 3365 74 2 105 chr11 87086497 87087076 -61696396 + L1PA8 LINE L1 5640 6158 -14 1478 241 79 55 chr11 87088041 87088737 -61694735 + L1MDb LINE L1 790 1538 -4988 21 0 0 0 chr11 87088790 87088811 -61694661 + AT_rich Low_complexity Low_complexity 1 21 0 2272 242 36 21 chr11 87088817 87089515 -61693957 + L1MC4 LINE L1 7205 7912 -130 1111 93 0 33 chr11 87089630 87089813 -61693659 + L1PA13 LINE L1 5982 6158 -5 231 346 121 10 chr11 87089815 87090009 -61693463 + MIR SINE MIR 22 235 -27 1809 329 73 5 chr11 87090215 87090990 -61692482 + HAL1 LINE L1 2 829 -1678 239 283 132 44 chr11 87091000 87091159 -61692313 - L2 LINE L2 -2162 1152 980 6360 62 2 0 chr11 87091161 87091999 -61691473 + L1PA7 LINE L1 5225 6064 -90 477 243 94 17 chr11 87092382 87092563 -61690909 - MLT1K LTR MaLR -22 566 372 182 271 21 0 chr11 87093661 87093709 -61689763 + MIR SINE MIR 21 69 -139 27 49 0 0 chr11 87095928 87095969 -61687503 + AT_rich Low_complexity Low_complexity 1 41 0 4408 27 0 0 chr11 87096168 87096683 -61686789 - L1PA3 LINE L1 0 6155 5641 1543 161 13 140 chr11 87096741 87097435 -61686037 - MER70A LTR ERVL -1 577 1 23 0 0 0 chr11 87097739 87097762 -61685710 + AT_rich Low_complexity Low_complexity 1 23 0 589 225 164 46 chr11 87097810 87098072 -61685400 - L1MA8 LINE L1 -24 6267 5975 3118 239 34 6 chr11 87098095 87098948 -61684524 + L1 LINE L1 2195 3071 -3075 1225 263 37 55 chr11 87099290 87099780 -61683692 + MLT1H LTR MaLR 20 500 -49 892 206 36 5 chr11 87099797 87100016 -61683456 + L1MDa LINE L1 2425 2650 -3890 951 208 18 9 chr11 87100025 87100246 -61683226 - L1M4 LINE L1 -3658 2488 2266 793 221 7 0 chr11 87100321 87100470 -61683002 + AluJb SINE Alu 139 288 -24 37 0 0 0 chr11 87100485 87100522 -61682950 + AT_rich Low_complexity Low_complexity 1 37 0 1795 240 37 9 chr11 87100522 87101059 -61682413 + L1MDa LINE L1 2928 3479 -3061 479 315 18 39 chr11 87101159 87101438 -61682034 + L1MDa LINE L1 3921 4193 -2347 361 267 20 0 chr11 87101444 87101545 -61681927 + L1MDa LINE L1 4522 4624 -1916 * 4144 232 70 26 chr11 87101540 87103111 -61680361 + L1MC/D LINE L1 3805 5443 -743 557 130 0 78 chr11 87103112 87103227 -61680245 + L1MD1 LINE L1 6137 6242 0 190 277 31 0 chr11 87103349 87103414 -61680058 - L2 LINE L2 -216 3056 2990 242 326 97 34 chr11 87103821 87103963 -61679509 + MIR SINE MIR 64 220 -42 2286 94 3 0 chr11 87103963 87104260 -61679212 + AluSp SINE Alu 1 298 -15 242 326 97 34 chr11 87104260 87104292 -61679180 + MIR SINE MIR 220 249 -13 233 114 23 23 chr11 87104344 87104388 -61679084 - L2 LINE L2 -9 3304 3261 184 243 9 103 chr11 87104533 87104640 -61678832 + MIR SINE MIR 100 196 -66 371 252 95 83 chr11 87105386 87105599 -61677873 + MIR SINE MIR 13 235 -27 202 194 0 0 chr11 87105599 87105635 -61677837 + (CAT)n Simple_repeat Simple_repeat 3 38 0 864 220 33 14 chr11 87105939 87106153 -61677319 + MER20 DNA MER1_type 2 219 0 597 249 116 6 chr11 87106197 87106378 -61677094 + MIR SINE MIR 60 260 -2 466 258 118 54 chr11 87107901 87107936 -61675536 + MER63A DNA MER1_type 13 44 -1644 1602 167 18 18 chr11 87107936 87108239 -61675233 + AluJb SINE Alu 3 305 0 466 258 118 54 chr11 87108239 87108388 -61675084 + MER63A DNA MER1_type 44 210 0 333 0 0 0 chr11 87109166 87109203 -61674269 + (TTA)n Simple_repeat Simple_repeat 3 39 0 567 90 34 0 chr11 87109318 87109407 -61674065 + L1PB2 LINE L1 6060 6151 0 1060 123 6 6 chr11 87109428 87109607 -61673865 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 1223 82 0 5 chr11 87109607 87109813 -61673659 + (GAAA)n Simple_repeat Simple_repeat 1 205 0 1543 213 3 7 chr11 87109827 87110128 -61673344 + AluJo SINE Alu 1 300 -12 25 0 0 0 chr11 87110128 87110153 -61673319 + AT_rich Low_complexity Low_complexity 1 25 0 8922 229 39 9 chr11 87110154 87110887 -61672585 - L1 LINE L1 -1814 4220 3510 1937 130 0 18 chr11 87110887 87111213 -61672259 - AluSx SINE Alu 0 324 4 8922 229 39 9 chr11 87111213 87113173 -61670299 - L1 LINE L1 -2524 3510 1441 250 390 26 0 chr11 87113384 87113538 -61669934 - L1 LINE L1 -5251 704 547 1199 340 5 23 chr11 87113777 87114207 -61669265 - L1 LINE L1 -5532 423 2 263 269 32 0 chr11 87114220 87114313 -61669159 - L1ME LINE L1 -3114 2966 2871 931 214 69 26 chr11 87114325 87114690 -61668782 + L1M1 LINE L1 3462 3848 -3717 623 224 81 5 chr11 87114684 87114894 -61668578 - L1ME LINE L1 -3213 2867 2642 * 336 340 16 11 chr11 87114896 87115087 -61668385 - L1ME LINE L1 -3549 2531 2340 315 238 29 19 chr11 87115088 87115193 -61668279 - L1ME LINE L1 -5922 148 43 293 315 19 28 chr11 87116553 87116661 -61666811 + MIR SINE MIR 45 151 -111 698 254 83 0 chr11 87116833 87117026 -61666446 + MER3 DNA MER1_type 1 209 0 219 139 0 0 chr11 87117386 87117422 -61666050 + (GGGA)n Simple_repeat Simple_repeat 2 37 0 1252 217 43 25 chr11 87117772 87118049 -61665423 - MLT1A1 LTR MaLR 0 365 84 341 229 24 12 chr11 87118152 87118235 -61665237 - MLT1A1 LTR MaLR -290 84 1 294 284 101 14 chr11 87118654 87118802 -61664670 - L2 LINE L2 -4 3309 3149 262 345 50 43 chr11 87119582 87119721 -61663751 - L2 LINE L2 -6 3266 3127 214 290 43 75 chr11 87120654 87120747 -61662725 - MIR SINE MIR -119 143 54 315 342 92 34 chr11 87120966 87121261 -61662211 + L2 LINE L2 1944 2255 -1059 5228 27 3 2 chr11 87122189 87122816 -61660656 - L1PA3 LINE L1 -250 5905 5278 24 32 0 0 chr11 87123486 87123517 -61659955 + AT_rich Low_complexity Low_complexity 1 31 0 180 0 0 0 chr11 87124045 87124065 -61659407 + (TAA)n Simple_repeat Simple_repeat 3 22 0 180 298 96 11 chr11 87124128 87124222 -61659250 + MIR SINE MIR 86 187 -75 328 288 170 13 chr11 87125474 87125627 -61657845 + MIR SINE MIR 5 181 -81 717 161 0 23 chr11 87125856 87125986 -61657486 - L1 LINE L1 -1958 4188 4062 2225 192 29 92 chr11 87125998 87126695 -61656777 + L1 LINE L1 4600 5252 -894 21616 45 0 4 chr11 87126698 87129427 -61654045 + L1PA5 LINE L1 1577 4296 -1850 2867 52 5 5 chr11 87129427 87129792 -61653680 + L1PA5 LINE L1 5782 6148 -6 1587 222 15 15 chr11 87130020 87130425 -61653047 + L1 LINE L1 4182 4586 -1560 725 208 65 12 chr11 87130444 87130612 -61652860 - LTR47A LTR ERVL 0 452 276 348 276 24 18 chr11 87131051 87131221 -61652251 - L1MC5 LINE L1 -492 7469 7299 748 276 77 68 chr11 87131404 87132153 -61651319 - L1MC4 LINE L1 -733 7228 6480 387 308 34 7 chr11 87133722 87133868 -61649604 - MIR SINE MIR -11 251 102 227 310 138 17 chr11 87134062 87134178 -61649294 - MIR3 SINE MIR -49 159 30 217 333 53 85 chr11 87135201 87135390 -61648082 + L2 LINE L2 2907 3089 -183 5259 66 0 1 chr11 87135480 87136560 -61646912 - L1PA7 LINE L1 -386 5768 4690 3072 52 0 0 chr11 87136570 87136952 -61646520 + L1PA7 LINE L1 5770 6151 -3 372 183 44 0 chr11 87137026 87137163 -61646309 + (TA)n Simple_repeat Simple_repeat 2 144 0 294 333 108 0 chr11 87137327 87137438 -61646034 + L2 LINE L2 3141 3263 -9 1247 184 25 57 chr11 87137494 87137776 -61645696 + MLT1-int LTR MaLR 331 603 -768 752 302 38 0 chr11 87137926 87138138 -61645334 + MLT1-int LTR MaLR 661 880 -491 248 276 86 19 chr11 87138406 87138511 -61644961 + LTR41 LTR ERVL 53 164 -609 317 252 10 10 chr11 87138945 87139048 -61644424 + LTR41 LTR ERVL 663 765 -8 496 330 152 10 chr11 87139984 87140287 -61643185 - L3 LINE CR1 -128 1449 1104 268 371 20 15 chr11 87140435 87140632 -61642840 + L2 LINE L2 2157 2354 -960 193 327 0 0 chr11 87140834 87140886 -61642586 + L2 LINE L2 2995 3046 -226 628 268 76 30 chr11 87141415 87141613 -61641859 + MIR SINE MIR 16 222 -40 418 294 50 111 chr11 87142394 87142657 -61640815 + L1MA6 LINE L1 806 1035 -6531 1940 153 3 0 chr11 87142657 87142964 -61640508 + AluSq SINE Alu 1 308 -5 418 294 50 111 chr11 87142964 87143122 -61640350 + L1MA6 LINE L1 1035 1201 -6365 383 310 13 32 chr11 87143134 87143292 -61640180 + L1MA6 LINE L1 1280 1434 -6132 4231 239 42 36 chr11 87143524 87145106 -61638366 + L1MA6 LINE L1 2056 3395 -4171 7644 25 0 3 chr11 87145132 87146031 -61637441 - L1PA3 LINE L1 0 6155 5260 294 100 0 0 chr11 87146028 87146068 -61637404 + L1PA3 LINE L1 5217 5256 -890 * 1029 237 32 12 chr11 87146066 87146532 -61636940 + L1MA6 LINE L1 3344 3832 -3733 1402 7 0 0 chr11 87146532 87146683 -61636789 + AluYb8 SINE Alu 158 308 -10 2198 205 33 85 chr11 87146686 87147354 -61636118 + L1MA6 LINE L1 3827 4459 -3106 6096 153 38 14 chr11 87147357 87148432 -61635040 + L1M3f LINE L1 4 1104 -4224 2827 164 10 34 chr11 87148430 87148519 -61634953 + L1MA6 LINE L1 6452 6542 -1177 * 1542 174 35 0 chr11 87148519 87148777 -61634695 + AluSx SINE Alu 35 301 -11 2827 164 10 34 chr11 87148777 87149456 -61634016 + L1MA6 LINE L1 6542 7205 -514 190 239 28 0 chr11 87149478 87149549 -61633923 + (CATATA)n Simple_repeat Simple_repeat 5 77 0 600 267 0 0 chr11 87149590 87149770 -61633702 + (TA)n Simple_repeat Simple_repeat 1 180 0 233 201 27 22 chr11 87149793 87149905 -61633567 - L1MCa LINE L1 -1340 6982 2006 * 239 296 23 0 chr11 87149873 87149961 -61633511 + L1MC4 LINE L1 6614 6703 -1339 448 205 7 26 chr11 87149962 87150113 -61633359 + (TA)n Simple_repeat Simple_repeat 1 148 0 2355 171 19 52 chr11 87150145 87150233 -61633239 + L1MA6 LINE L1 7201 7290 -420 2457 64 0 0 chr11 87150233 87150528 -61632944 - AluY SINE Alu -16 295 1 2355 171 19 52 chr11 87150528 87150921 -61632551 + L1MA6 LINE L1 7290 7616 -94 1540 178 54 0 chr11 87150921 87151197 -61632275 + AluJo SINE Alu 1 291 -21 2355 171 19 52 chr11 87151197 87151289 -61632183 + L1MA6 LINE L1 7616 7710 0 225 211 0 0 chr11 87151717 87151769 -61631703 + GA-rich Low_complexity Low_complexity 2 53 0 762 256 39 22 chr11 87151866 87152178 -61631294 + L1MC5 LINE L1 7584 7900 -61 26 64 0 0 chr11 87152388 87152435 -61631037 + AT_rich Low_complexity Low_complexity 1 47 0 180 339 174 9 chr11 87152527 87152636 -61630836 - L2 LINE L2 -4 3268 3142 23 54 0 0 chr11 87153052 87153089 -61630383 + AT_rich Low_complexity Low_complexity 1 37 0 2313 71 3 3 chr11 87153630 87153925 -61629547 - AluY SINE Alu -16 295 1 277 290 50 10 chr11 87154988 87155088 -61628384 - MIR SINE MIR -156 106 3 315 0 0 0 chr11 87155628 87155663 -61627809 + (TG)n Simple_repeat Simple_repeat 2 36 0 1872 164 0 23 chr11 87155691 87155996 -61627476 + AluSx SINE Alu 3 300 -12 755 293 108 28 chr11 87156245 87156709 -61626763 + L3 LINE CR1 619 1119 -458 502 274 58 14 chr11 87156932 87157140 -61626332 - L1M4 LINE L1 -2215 3931 3715 383 314 22 29 chr11 87157181 87157318 -61626154 - MIR SINE MIR -123 139 4 4023 208 84 82 chr11 87157568 87157708 -61625764 + L1MC1 LINE L1 5 143 -6283 2126 107 3 22 chr11 87157708 87158026 -61625446 + AluSx SINE Alu 1 312 0 4023 208 84 82 chr11 87158026 87160222 -61623250 + L1MC1 LINE L1 143 2352 -4074 2067 121 10 0 chr11 87160222 87160519 -61622953 + AluSg SINE Alu 1 300 -10 4023 208 84 82 chr11 87160519 87161195 -61622277 + L1MC1 LINE L1 2352 3025 -3401 1976 66 39 19 chr11 87161225 87161505 -61621967 + AluY SINE Alu 21 305 0 5082 210 72 33 chr11 87161505 87162792 -61620680 + L1MC1 LINE L1 4199 5659 -954 298 116 0 0 chr11 87162792 87162835 -61620637 + MER41B LTR ERV1 479 521 -114 5082 210 72 33 chr11 87162835 87163824 -61619648 + L1MC1 LINE L1 5659 6608 -5 207 0 0 0 chr11 87164225 87164248 -61619224 + (TAAAA)n Simple_repeat Simple_repeat 4 26 0 328 191 11 64 chr11 87164288 87164382 -61619090 + MIR SINE MIR 71 159 -103 388 284 127 0 chr11 87164589 87164723 -61618749 + MIR SINE MIR 49 199 -63 1756 211 59 29 chr11 87165074 87165562 -61617910 + MLT1D LTR MaLR 1 503 -2 193 365 10 10 chr11 87166177 87166273 -61617199 + L2 LINE L2 2891 2986 -286 793 208 5 59 chr11 87167603 87167824 -61615648 + MER3 DNA MER1_type 1 209 0 26 50 0 0 chr11 87168137 87168177 -61615295 + AT_rich Low_complexity Low_complexity 1 40 0 1588 65 0 9 chr11 87168483 87168697 -61614775 + L1PA8 LINE L1 5960 6171 -1 2334 104 0 0 chr11 87169656 87169963 -61613509 + AluSx SINE Alu 1 307 -5 23 33 0 0 chr11 87171082 87171112 -61612360 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr11 87171274 87171302 -61612170 + AT_rich Low_complexity Low_complexity 1 28 0 299 290 0 11 chr11 87172087 87172180 -61611292 + MER103 DNA DNA 37 128 -38 343 314 85 8 chr11 87172569 87172687 -61610785 + MIR SINE MIR 20 146 -62 356 318 92 23 chr11 87172883 87173056 -61610416 - MIR SINE MIR -50 212 28 2942 185 30 2 chr11 87173922 87174490 -61608982 - L1PB4 LINE L1 -2 6154 5571 228 247 21 41 chr11 87174893 87174990 -61608482 + (CTA)n Simple_repeat Simple_repeat 2 96 0 275 135 39 0 chr11 87175015 87175067 -61608405 + LTR60 LTR ERV1 1 54 -532 578 199 55 27 chr11 87175173 87175319 -61608153 + LTR43 LTR ERV1 131 280 -322 4009 166 47 8 chr11 87175448 87175540 -61607932 + L1MB2 LINE L1 5399 5486 -685 2125 125 0 3 chr11 87175540 87175844 -61607628 + AluSg SINE Alu 1 303 -7 4009 166 47 8 chr11 87175844 87176492 -61606980 + L1MB2 LINE L1 5486 6168 -3 349 282 35 63 chr11 87176630 87176772 -61606700 + MIR SINE MIR 17 154 -108 375 23 0 0 chr11 87177014 87177058 -61606414 + (TAA)n Simple_repeat Simple_repeat 1 44 0 21 0 0 0 chr11 87177150 87177171 -61606301 + AT_rich Low_complexity Low_complexity 1 21 0 276 329 43 18 chr11 87177278 87177442 -61606030 - MIR SINE MIR -31 231 64 2278 99 0 0 chr11 87178544 87178847 -61604625 - AluSg SINE Alu -7 303 1 619 300 93 10 chr11 87179001 87179291 -61604181 - L2 LINE L2 -5 3308 2995 376 298 118 22 chr11 87179378 87179556 -61603916 + MIR SINE MIR 64 258 -4 298 240 0 13 chr11 87179598 87179673 -61603799 + (ATAGG)n Simple_repeat Simple_repeat 2 75 0 255 384 23 0 chr11 87179802 87179935 -61603537 + MIR3 SINE MIR 50 185 -23 219 69 0 0 chr11 87180460 87180489 -61602983 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 237 232 202 0 chr11 87180799 87180898 -61602574 + L1ME4a LINE L1 5992 6110 -11 218 229 21 0 chr11 87181817 87181865 -61601607 - L2 LINE L2 -7 3306 3258 210 308 138 0 chr11 87182105 87182170 -61601302 + L2 LINE L2 3102 3175 -97 1893 106 51 0 chr11 87182787 87183080 -61600392 + AluSp SINE Alu 4 311 -2 200 152 0 0 chr11 87183080 87183105 -61600367 + GA-rich Low_complexity Low_complexity 6 33 0 189 0 0 0 chr11 87184464 87184485 -61598987 + (A)n Simple_repeat Simple_repeat 1 21 0 215 233 27 27 chr11 87184773 87184846 -61598626 + GA-rich Low_complexity Low_complexity 3 75 0 411 297 0 0 chr11 87184985 87185076 -61598396 + L2 LINE L2 3182 3272 0 1272 273 52 63 chr11 87186335 87186878 -61596594 - MLT1F1 LTR MaLR -1 566 5 2044 167 74 42 chr11 87186914 87187314 -61596158 + MLT2C2 LTR ERVL 1 418 -46 234 91 0 0 chr11 87187314 87187347 -61596125 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 2044 167 74 42 chr11 87187347 87187394 -61596078 + MLT2C2 LTR ERVL 418 462 -2 239 211 33 89 chr11 87187494 87187584 -61595888 + MIR SINE MIR 37 121 -87 278 208 47 81 chr11 87188436 87188550 -61594922 + MIR3 SINE MIR 48 159 -49 23 92 0 0 chr11 87190120 87190185 -61593287 + AT_rich Low_complexity Low_complexity 1 65 0 1459 230 34 52 chr11 87191168 87191664 -61591808 - L1M4 LINE L1 -1776 4370 3884 27 49 0 0 chr11 87191784 87191825 -61591647 + AT_rich Low_complexity Low_complexity 1 41 0 1683 251 23 0 chr11 87191825 87192267 -61591205 - L1M4 LINE L1 -2294 3852 3401 249 141 26 51 chr11 87192268 87192346 -61591126 + (TTATA)n Simple_repeat Simple_repeat 4 79 0 281 163 39 62 chr11 87192395 87192524 -61590948 + (TTATA)n Simple_repeat Simple_repeat 4 129 0 23 92 0 0 chr11 87192576 87192641 -61590831 + AT_rich Low_complexity Low_complexity 1 65 0 8598 210 61 70 chr11 87192643 87196241 -61587231 + L1MC3 LINE L1 3502 7212 -573 252 239 22 65 chr11 87196241 87196333 -61587139 + MLT1F1 LTR MaLR 60 147 -420 8598 210 61 70 chr11 87196333 87196900 -61586572 + L1MC3 LINE L1 7212 7783 -2 228 328 58 58 chr11 87197025 87197214 -61586258 - MIR SINE MIR -70 192 4 316 399 5 27 chr11 87197331 87197519 -61585953 - MIR3 SINE MIR -6 202 19 23 33 0 0 chr11 87197661 87197691 -61585781 + AT_rich Low_complexity Low_complexity 1 30 0 282 263 0 0 chr11 87197723 87197799 -61585673 + MER116 DNA Mariner 1 76 -4 5127 154 19 12 chr11 87197894 87198926 -61584546 + L1PA16 LINE L1 5116 6152 -14 225 311 66 19 chr11 87198933 87199039 -61584433 - L2 LINE L2 0 3313 3203 2164 151 0 14 chr11 87199138 87199489 -61583983 + MER7A DNA MER2_type 2 345 -1 414 293 61 39 chr11 87199495 87199676 -61583796 - MIR SINE MIR -55 207 23 433 264 140 4 chr11 87199682 87199840 -61583632 + L1ME2 LINE L1 5472 5647 -523 549 273 78 34 chr11 87199849 87200296 -61583176 - L1M4 LINE L1 -2896 3250 2784 957 9 0 0 chr11 87200500 87200611 -61582861 + L1PA4 LINE L1 6045 6155 0 370 342 82 67 chr11 87201245 87201450 -61582022 + L2 LINE L2 2690 2890 -382 982 65 0 0 chr11 87201450 87201574 -61581898 - L1PA5 LINE L1 -8 6146 6023 370 342 82 67 chr11 87201574 87201931 -61581541 + L2 LINE L2 2890 3267 -5 2681 99 33 5 chr11 87202463 87202856 -61580616 + MLT2A1 LTR ERVL 1 404 -40 368 146 71 16 chr11 87202860 87203114 -61580358 + (TA)n Simple_repeat Simple_repeat 1 268 0 276 81 0 0 chr11 87203162 87203199 -61580273 - MLT2A2 LTR ERVL -13 440 404 449 321 65 11 chr11 87203678 87203862 -61579610 + Charlie8 DNA MER1_type 72 265 -2152 255 316 257 12 chr11 87204077 87204248 -61579224 + MIR SINE MIR 50 262 0 629 300 25 51 chr11 87204780 87205017 -61578455 - MIR SINE MIR -16 246 16 202 289 359 6 chr11 87205300 87205459 -61578013 - L3 LINE CR1 -75 1502 1288 1570 282 171 38 chr11 87205829 87206553 -61576919 - L2 LINE L2 0 3313 2686 1953 140 91 19 chr11 87206553 87206917 -61576555 - MLT1B LTR MaLR 0 390 1 1570 282 171 38 chr11 87206917 87207484 -61575988 - L2 LINE L2 -627 2686 1846 381 90 0 30 chr11 87209447 87209514 -61573958 - L1MA1 LINE L1 0 6302 6238 920 115 153 0 chr11 87209514 87209697 -61573775 + L1MA2 LINE L1 6047 6257 -47 1690 140 74 47 chr11 87209761 87210126 -61573346 - THE1C LTR MaLR 0 375 1 730 248 55 95 chr11 87210212 87210611 -61572861 + L1ME2 LINE L1 5773 6155 -9 253 261 23 15 chr11 87210623 87210753 -61572719 + (TA)n Simple_repeat Simple_repeat 1 131 0 188 321 28 19 chr11 87211476 87211582 -61571890 + MIR SINE MIR 120 226 -36 25 31 0 0 chr11 87211584 87211616 -61571856 + AT_rich Low_complexity Low_complexity 1 32 0 202 314 35 58 chr11 87212112 87212284 -61571188 - MIR SINE MIR -3 259 92 256 330 10 0 chr11 87212400 87212497 -61570975 + GA-rich Low_complexity Low_complexity 4 101 0 382 289 150 46 chr11 87212648 87212908 -61570564 + L1MEd LINE L1 561 847 -5272 19106 139 80 19 chr11 87213005 87216367 -61567105 + L1M1 LINE L1 12 3582 -3983 2380 90 0 0 chr11 87216367 87216667 -61566805 - AluY SINE Alu -11 300 1 19106 139 80 19 chr11 87216667 87216688 -61566784 + L1M1 LINE L1 3582 3600 -3965 4096 191 13 11 chr11 87216684 87217677 -61565795 + L1MA2 LINE L1 3474 4474 -3091 * 2412 151 12 5 chr11 87217669 87218210 -61565262 + L1MA2 LINE L1 6542 7088 -636 * 2175 125 84 0 chr11 87218210 87218545 -61564927 + THE1B LTR MaLR 1 363 -1 3729 118 14 41 chr11 87218545 87219204 -61564268 + L1MA2 LINE L1 7083 7723 0 745 285 20 10 chr11 87219365 87219670 -61563802 - L1MEc LINE L1 -4680 1716 1409 1115 258 60 40 chr11 87219768 87220268 -61563204 + L1ME2 LINE L1 5620 6129 -35 413 307 125 81 chr11 87220749 87221319 -61562153 + L1MEd LINE L1 429 1023 -5182 563 311 36 22 chr11 87221574 87221937 -61561535 + L1MEd LINE L1 1346 2061 -855 31 58 0 0 chr11 87222031 87222083 -61561389 + AT_rich Low_complexity Low_complexity 1 52 0 1893 207 35 59 chr11 87222270 87222497 -61560975 + MLT1D LTR MaLR 10 241 -264 2433 87 0 0 chr11 87222497 87222806 -61560666 + AluY SINE Alu 1 309 -2 1893 207 35 59 chr11 87222806 87223086 -61560386 + MLT1D LTR MaLR 241 505 0 1225 170 167 29 chr11 87223142 87223453 -61560019 - MLT1A2 LTR MaLR -20 354 1 22 35 0 0 chr11 87223530 87223559 -61559913 + AT_rich Low_complexity Low_complexity 1 29 0 2591 236 61 22 chr11 87223749 87224508 -61558964 + L1MB8 LINE L1 5349 6136 -42 257 203 16 156 chr11 87224700 87224747 -61558725 + MIR SINE MIR 48 100 -162 2238 174 49 2 chr11 87224747 87225154 -61558318 + MSTB LTR MaLR 1 426 0 257 203 16 156 chr11 87225154 87225189 -61558283 + MIR SINE MIR 100 111 -151 1692 170 21 0 chr11 87225189 87225504 -61557968 - AluJb SINE Alu 0 321 1 257 203 16 156 chr11 87225504 87225546 -61557926 + MIR SINE MIR 111 157 -105 1734 258 42 45 chr11 87226013 87226607 -61556865 - MLT1E LTR MaLR -1 592 1 2150 98 0 44 chr11 87226815 87227132 -61556340 - AluSc SINE Alu -6 303 1 23 0 0 0 chr11 87227326 87227349 -61556123 + AT_rich Low_complexity Low_complexity 1 23 0 1026 47 0 0 chr11 87227541 87227670 -61555802 + L1PA5 LINE L1 6026 6154 0 21 36 0 0 chr11 87227717 87227745 -61555727 + AT_rich Low_complexity Low_complexity 1 28 0 256 248 77 68 chr11 87227788 87227905 -61555567 - L2 LINE L2 -9 3304 3187 187 353 0 0 chr11 87227893 87227944 -61555528 - L2 LINE L2 -17 3255 3205 * 2153 83 0 4 chr11 87228756 87229032 -61554440 - AluSx SINE Alu -37 275 1 3611 138 43 39 chr11 87229137 87229700 -61553772 - Tigger1 DNA MER2_type -12 2406 1838 2344 105 0 0 chr11 87229700 87229995 -61553477 + AluSx SINE Alu 1 295 -17 3611 138 43 39 chr11 87229995 87230100 -61553372 - Tigger1 DNA MER2_type -580 1838 1735 * 7201 124 9 20 chr11 87230083 87230894 -61552578 - Tigger1 DNA MER2_type -1258 1160 363 593 58 0 11 chr11 87230894 87230981 -61552491 + (GA)n Simple_repeat Simple_repeat 1 86 0 7201 124 9 20 chr11 87230981 87231289 -61552183 - Tigger1 DNA MER2_type -2055 363 53 892 207 11 11 chr11 87231292 87231466 -61552006 + AluJb SINE Alu 124 297 -15 2173 114 7 3 chr11 87231887 87232195 -61551277 + AluSc SINE Alu 1 309 0 270 176 0 0 chr11 87232195 87232246 -61551226 + GA-rich Low_complexity Low_complexity 2 52 0 22 35 0 0 chr11 87232976 87233005 -61550467 + AT_rich Low_complexity Low_complexity 1 29 0 225 0 0 0 chr11 87233076 87233101 -61550371 + (A)n Simple_repeat Simple_repeat 1 25 0 4048 121 84 83 chr11 87233761 87235140 -61548332 + pTR5 LTR ERV1 741 2438 0 1523 206 0 26 chr11 87235369 87235675 -61547797 + AluY SINE Alu 14 311 0 520 246 60 27 chr11 87235683 87235866 -61547606 + MIR SINE MIR 72 260 -2 212 196 118 0 chr11 87235881 87235932 -61547540 + MIR SINE MIR 129 185 -77 241 196 0 0 chr11 87236103 87236145 -61547327 - L2 LINE L2 -1 3312 3271 313 299 8 63 chr11 87236145 87236272 -61547200 + MIR SINE MIR 2 121 -141 354 267 0 0 chr11 87236337 87236442 -61547030 - L1PA16 LINE L1 -1018 5128 5024 5502 119 32 3 chr11 87236453 87237453 -61546019 + L1PA16 LINE L1 5141 6165 -1 335 289 10 10 chr11 87237508 87237605 -61545867 + MIR SINE MIR 166 262 0 518 279 111 25 chr11 87237694 87238009 -61545463 - L2 LINE L2 -2270 1044 703 449 250 59 29 chr11 87238165 87238301 -61545171 + L2 LINE L2 3174 3313 0 22 0 0 0 chr11 87239810 87239832 -61543640 + AT_rich Low_complexity Low_complexity 1 22 0 250 253 10 20 chr11 87239996 87240095 -61543377 - L1M LINE L1 -756 5422 5325 491 337 88 20 chr11 87240109 87240516 -61542956 - L1M4 LINE L1 -3558 2588 2154 1769 168 6 40 chr11 87240539 87240861 -61542611 - AluSx SINE Alu -1 311 1 24 53 0 0 chr11 87240955 87240993 -61542479 + AT_rich Low_complexity Low_complexity 1 38 0 2088 120 3 26 chr11 87241234 87241542 -61541930 - AluSx SINE Alu -11 301 1 21 0 0 0 chr11 87242246 87242267 -61541205 + AT_rich Low_complexity Low_complexity 1 21 0 621 176 11 48 chr11 87242479 87242655 -61540817 + MER20 DNA MER1_type 2 218 -1 222 37 0 0 chr11 87242894 87242921 -61540551 + (CA)n Simple_repeat Simple_repeat 2 28 0 463 308 145 0 chr11 87243173 87243407 -61540065 + L2 LINE L2 3022 3289 -24 360 288 38 30 chr11 87244760 87244892 -61538580 + MIR SINE MIR 117 249 -13 270 386 45 30 chr11 87244899 87245101 -61538371 - L2 LINE L2 -1 3271 3067 514 259 71 52 chr11 87245483 87245695 -61537777 - MIR SINE MIR -33 229 14 208 235 0 0 chr11 87246009 87246060 -61537412 - L2 LINE L2 0 3313 3263 293 342 110 0 chr11 87246131 87246286 -61537186 - MIR SINE MIR 0 262 91 325 323 64 64 chr11 87246652 87246887 -61536585 - MLT1K LTR MaLR -164 424 190 180 0 0 0 chr11 87246989 87247009 -61536463 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 273 313 139 1 chr11 87247900 87248066 -61535406 + MIR3 SINE MIR 24 172 -36 2051 161 61 23 chr11 87248324 87248753 -61534719 - MER65A LTR ERV1 0 445 1 835 300 18 4 chr11 87248847 87249074 -61534398 - MIR SINE MIR -22 240 11 223 399 70 18 chr11 87249244 87249517 -61533955 + L2 LINE L2 1379 1665 -1649 1677 174 26 23 chr11 87249530 87249835 -61533637 + AluJb SINE Alu 1 306 -6 887 297 19 4 chr11 87249836 87250092 -61533380 - MIR SINE MIR 0 262 3 229 365 57 13 chr11 87250188 87250418 -61533054 + L2 LINE L2 1710 1949 -1365 198 0 0 0 chr11 87250548 87250570 -61532902 + (T)n Simple_repeat Simple_repeat 1 22 0 348 299 120 22 chr11 87251015 87251199 -61532273 + MIR SINE MIR 1 202 -60 412 313 7 27 chr11 87251332 87251482 -61531990 - MLT1J LTR MaLR -139 372 226 3478 228 35 54 chr11 87252089 87253171 -61530301 + L1MD3 LINE L1 6208 7269 -726 467 216 128 0 chr11 87253178 87253280 -61530192 + MLT1F1 LTR MaLR 1 115 -452 1161 143 0 0 chr11 87253291 87253466 -61530006 + AluY SINE Alu 131 305 -6 1324 167 148 49 chr11 87253471 87253837 -61529635 + L1MD3 LINE L1 7399 7800 -195 609 153 32 40 chr11 87253819 87254064 -61529408 + L1MA7 LINE L1 5943 6291 0 * 879 148 131 0 chr11 87254070 87254253 -61529219 + L1MD3 LINE L1 7787 7993 -2 918 302 92 11 chr11 87254266 87254710 -61528762 - L1ME3A LINE L1 -230 5940 5461 1675 282 92 46 chr11 87254731 87255959 -61527513 - L1ME3A LINE L1 -763 5383 4099 1278 188 34 102 chr11 87255971 87256355 -61527117 - MLT1A1 LTR MaLR -7 358 1 304 246 44 92 chr11 87256380 87256465 -61527007 - L1ME3A LINE L1 -2084 4062 3974 2554 52 0 0 chr11 87256465 87256772 -61526700 - AluY SINE Alu -4 307 1 304 246 44 92 chr11 87256772 87256914 -61526558 - L1ME3A LINE L1 -2172 3974 3846 3759 245 92 38 chr11 87256918 87259851 -61523621 - L1MD2 LINE L1 -13 6740 3642 2195 116 0 6 chr11 87259851 87260162 -61523310 - AluSc SINE Alu 0 309 1 3759 245 92 38 chr11 87260162 87260341 -61523131 - L1MD2 LINE L1 -3111 3642 3474 440 181 29 57 chr11 87260354 87260459 -61523013 - L1MA2 LINE L1 0 6304 6203 727 323 28 6 chr11 87260717 87261036 -61522436 - L1ME3A LINE L1 -201 5969 5644 733 253 30 39 chr11 87261050 87261386 -61522086 - L1MD2 LINE L1 -3057 3483 3151 682 90 0 20 chr11 87261425 87261525 -61521947 + MER4A LTR ERV1 1 98 -566 758 160 15 24 chr11 87261527 87261721 -61521751 + MER4A LTR ERV1 263 513 -151 6516 88 4 1 chr11 87261721 87263193 -61520279 + L1PA13 LINE L1 4640 6160 -3 878 294 67 34 chr11 87263203 87263870 -61519602 - L1MD2 LINE L1 -3401 3139 2446 509 122 0 20 chr11 87263996 87264094 -61519378 - L1MA4A LINE L1 -5 6298 6203 2128 139 0 0 chr11 87264116 87264425 -61519047 - AluSx SINE Alu 0 312 4 355 127 0 0 chr11 87264428 87264483 -61518989 - L1MA4A LINE L1 -84 6219 6165 273 331 40 24 chr11 87264634 87264758 -61518714 - MIR SINE MIR -31 231 106 233 336 45 9 chr11 87265020 87265130 -61518342 - L1MD2 LINE L1 -5954 576 463 6270 79 9 14 chr11 87265198 87266562 -61516910 - L1PA8A LINE L1 -1 6130 4759 1073 168 11 0 chr11 87266570 87266749 -61516723 - MER57A LTR ERV1 -154 249 69 256 345 12 0 chr11 87266908 87266992 -61516480 - MIR SINE MIR -117 145 61 1251 105 44 97 chr11 87267052 87267300 -61516172 - THE1C LTR MaLR -140 235 1 449 313 41 41 chr11 87267300 87267416 -61516056 + L2 LINE L2 3045 3160 -153 378 0 0 0 chr11 87267416 87267458 -61516014 + (TG)n Simple_repeat Simple_repeat 2 43 0 449 313 41 41 chr11 87267458 87267609 -61515863 + L2 LINE L2 3159 3312 -1 537 171 105 33 chr11 87268198 87268350 -61515122 + L1MB8 LINE L1 6004 6166 -12 365 263 101 0 chr11 87268439 87268538 -61514934 - L2 LINE L2 -1 3271 3163 542 126 79 24 chr11 87268539 87268666 -61514806 + L1MA4 LINE L1 6161 6294 -6 214 318 0 57 chr11 87270279 87270367 -61513105 - L2 LINE L2 -456 2858 2776 252 372 89 24 chr11 87270572 87271153 -61512319 + L2 LINE L2 2359 2977 -337 834 140 7 0 chr11 87271409 87271545 -61511927 - L1PA16 LINE L1 -9 6157 6021 2087 147 169 15 chr11 87271547 87272015 -61511457 - L1PA16 LINE L1 -194 5972 5433 2159 75 7 4 chr11 87272015 87272341 -61511131 - AluY SINE Alu 0 327 1 3488 116 7 21 chr11 87272846 87273413 -61510059 - L1PB2 LINE L1 -5 6849 6291 9283 242 16 25 chr11 87273423 87276204 -61507268 - L1PB2 LINE L1 -745 6104 3350 1037 229 10 0 chr11 87276204 87276405 -61507067 + MER1B DNA MER1_type 1 203 -94 1522 114 26 0 chr11 87276431 87276659 -61506813 + MER1B DNA MER1_type 106 339 0 11498 183 31 25 chr11 87276659 87277620 -61505852 - L1PB2 LINE L1 -3492 3357 2403 2482 150 8 0 chr11 87277620 87278019 -61505453 + MER57A LTR ERV1 2 403 0 11498 183 31 25 chr11 87278019 87278658 -61504814 - L1PB2 LINE L1 -4446 2403 1769 2531 46 0 3 chr11 87278658 87278961 -61504511 - AluY SINE Alu -9 302 1 11498 183 31 25 chr11 87278961 87280143 -61503329 - L1PB2 LINE L1 -5080 1769 714 225 0 0 0 chr11 87280313 87280338 -61503134 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 467 233 68 31 chr11 87280379 87280542 -61502930 + MIR SINE MIR 68 236 -26 560 299 112 9 chr11 87280800 87281014 -61502458 - MIR SINE MIR -7 255 20 339 359 0 17 chr11 87281122 87281239 -61502233 - MIR SINE MIR -72 136 22 290 397 68 0 chr11 87281680 87281826 -61501646 - L2 LINE L2 -1 3271 3116 745 52 0 0 chr11 87332254 87332351 -61451121 - L1P LINE L1 -3724 2422 2326 292 267 40 30 chr11 87332353 87332454 -61451018 + L2 LINE L2 3212 3313 0 643 249 15 68 chr11 87333802 87334007 -61449465 - MIR SINE MIR -24 238 45 421 305 128 6 chr11 87334343 87334507 -61448965 - MIR SINE MIR -13 249 66 2271 111 103 25 chr11 87335485 87335881 -61447591 - MSTA LTR MaLR 0 428 2 214 318 52 78 chr11 87336033 87336187 -61447285 + MIR SINE MIR 10 159 -103 182 350 12 25 chr11 87336137 87336217 -61447255 - MIR3 SINE MIR -43 165 87 * 1173 275 28 15 chr11 87336359 87336686 -61446786 + MER45C DNA AcHobo 1 331 -622 318 376 57 16 chr11 87336703 87336897 -61446575 + MER45C DNA AcHobo 309 510 -443 301 222 0 0 chr11 87336997 87337051 -61446421 + MER45C DNA AcHobo 900 953 0 339 25 0 0 chr11 87337942 87337982 -61445490 + (TC)n Simple_repeat Simple_repeat 1 40 0 297 0 0 0 chr11 87337981 87338014 -61445458 + (CA)n Simple_repeat Simple_repeat 1 33 0 * 358 319 28 22 chr11 87339524 87339706 -61443766 + MIR SINE MIR 13 195 -67 183 139 0 0 chr11 87342032 87342068 -61441404 + (TG)n Simple_repeat Simple_repeat 2 37 0 5392 165 23 17 chr11 87342302 87344051 -61439421 + L1PA16 LINE L1 4402 6157 -9 29 0 0 0 chr11 87344104 87344133 -61439339 + AT_rich Low_complexity Low_complexity 1 29 0 220 282 42 0 chr11 87344722 87344793 -61438679 + L2 LINE L2 3198 3271 -1 672 225 98 0 chr11 87345327 87345500 -61437972 - MIR SINE MIR -6 256 67 430 309 78 34 chr11 87346176 87346380 -61437092 - MIR SINE MIR -3 259 47 2161 125 3 0 chr11 87346380 87346685 -61436787 - AluSx SINE Alu 0 312 7 883 271 60 30 chr11 87347391 87347690 -61435782 + MLT1G1 LTR MaLR 5 312 -283 252 271 0 0 chr11 87347957 87348016 -61435456 - L2 LINE L2 -219 3053 2995 311 237 125 20 chr11 87349564 87349716 -61433756 + L1 LINE L1 3835 4002 -2144 21 0 0 0 chr11 87349732 87349753 -61433719 + AT_rich Low_complexity Low_complexity 1 21 0 1163 251 13 22 chr11 87349893 87350208 -61433264 + MER93a LTR ERV1 91 402 0 393 321 0 58 chr11 87350208 87350432 -61433040 + L1ME LINE L1 4040 4250 -1896 452 332 21 5 chr11 87350724 87350914 -61432558 + L1ME LINE L1 5078 5270 -876 289 228 25 25 chr11 87350915 87350994 -61432478 - MER116 DNA Mariner -1 79 1 348 303 50 10 chr11 87351012 87351210 -61432262 + L1ME LINE L1 5288 5493 -669 1007 182 44 0 chr11 87351493 87351674 -61431798 - MER5A DNA MER1_type 0 189 1 188 286 86 0 chr11 87351747 87351817 -61431655 - MIR SINE MIR -12 250 175 385 167 0 60 chr11 87351817 87351901 -61431571 + L1MA8 LINE L1 5715 5793 -507 370 176 8 34 chr11 87351903 87352022 -61431450 + (TA)n Simple_repeat Simple_repeat 1 116 0 2584 138 37 16 chr11 87352025 87352517 -61430955 + L1MA8 LINE L1 5785 6286 -5 512 321 19 6 chr11 87352540 87352699 -61430773 - MIR SINE MIR -82 180 20 2313 88 7 3 chr11 87353141 87353437 -61430035 + AluSx SINE Alu 1 297 -15 2593 40 0 0 chr11 87353837 87354135 -61429337 + AluY SINE Alu 1 298 -13 611 294 10 34 chr11 87354280 87354484 -61428988 + L1P3 LINE L1 669 2140 -4858 1530 206 46 3 chr11 87354487 87354856 -61428616 + L1P3 LINE L1 2278 2662 -4922 * 14707 149 40 3 chr11 87354852 87355350 -61428122 + L1M1 LINE L1 2714 3192 -2982 189 0 0 0 chr11 87355350 87355371 -61428101 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 14707 149 40 3 chr11 87355371 87357733 -61425739 + L1M1 LINE L1 3192 5685 -489 2223 101 0 7 chr11 87357733 87358031 -61425441 + AluSx SINE Alu 1 296 -16 14707 149 40 3 chr11 87358031 87358051 -61425421 + L1M1 LINE L1 5685 5703 -471 385 61 15 15 chr11 87358035 87358101 -61425371 - L1P LINE L1 -755 5391 5326 * 2461 82 3 0 chr11 87358101 87358414 -61425058 + L1PA7 LINE L1 5823 6154 0 3379 110 18 4 chr11 87358414 87358903 -61424569 + L1PA11 LINE L1 5677 6174 0 236 386 65 33 chr11 87359199 87359347 -61424125 + L2 LINE L2 3107 3260 -8 207 100 0 0 chr11 87359347 87359377 -61424095 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 306 328 194 32 chr11 87360581 87360828 -61422644 - L2 LINE L2 0 3272 2986 738 121 15 0 chr11 87361025 87361157 -61422315 - L1MA7 LINE L1 0 6291 6158 1265 154 53 0 chr11 87361159 87361485 -61421987 - L1MA8 LINE L1 -2 6289 5892 249 140 53 18 chr11 87361882 87361939 -61421533 - L1ME4a LINE L1 -3 6118 6060 425 280 53 8 chr11 87361948 87362080 -61421392 - MIR SINE MIR -1 261 124 3931 197 39 33 chr11 87362109 87363136 -61420336 + L1M1 LINE L1 2338 3370 -4195 361 313 45 9 chr11 87363303 87363415 -61420057 - L2 LINE L2 -38 3234 3119 384 286 71 19 chr11 87363514 87363780 -61419692 - L1ME4a LINE L1 -173 5948 5669 225 360 45 0 chr11 87364228 87364339 -61419133 + MIR SINE MIR 76 191 -71 711 214 15 35 chr11 87364469 87364670 -61418802 + L1MB7 LINE L1 5987 6183 -1 436 306 200 8 chr11 87364747 87365002 -61418470 - L2 LINE L2 -16 3297 2994 2304 77 3 0 chr11 87365082 87365379 -61418093 + AluY SINE Alu 1 298 -13 258 95 0 0 chr11 87365505 87365547 -61417925 + (A)n Simple_repeat Simple_repeat 1 42 0 1909 81 0 8 chr11 87365747 87366037 -61417435 - AluSc SINE Alu 0 309 47 1188 192 5 5 chr11 87366410 87366613 -61416859 + AluJo SINE Alu 84 286 -26 190 0 67 0 chr11 87366794 87366824 -61416648 + (TA)n Simple_repeat Simple_repeat 1 32 0 212 0 36 0 chr11 87366876 87366904 -61416568 + (CA)n Simple_repeat Simple_repeat 1 29 0 1139 199 26 23 chr11 87367192 87367499 -61415973 - L1MA4 LINE L1 -6 6294 5987 2787 136 20 53 chr11 87367796 87368304 -61415168 - L1PB4 LINE L1 -6 6150 5660 1887 319 75 26 chr11 87368627 87369714 -61413758 + MER89-int LTR ERV1 1907 3046 -1601 521 361 46 25 chr11 87370536 87370929 -61412543 + MER89-int LTR ERV1 6129 6529 -272 1890 140 74 3 chr11 87371506 87371842 -61411630 + MER46B DNA MER2_type 2 236 0 206 261 101 42 chr11 87371875 87371994 -61411478 - L2 LINE L2 -1720 1594 1469 236 308 83 19 chr11 87372439 87372595 -61410877 + L1 LINE L1 4865 5030 -1116 2800 3 0 0 chr11 87372597 87372897 -61410575 + AluYa5 SINE Alu 1 300 -11 621 298 82 46 chr11 87373215 87373428 -61410044 - HsTC2 DNA Tc2 -1058 840 609 2418 89 0 0 chr11 87373428 87373730 -61409742 - AluSc SINE Alu -7 302 1 621 298 82 46 chr11 87373730 87373845 -61409627 - HsTC2 DNA Tc2 -1289 609 500 25 0 0 0 chr11 87373882 87373907 -61409565 + AT_rich Low_complexity Low_complexity 1 25 0 226 260 88 77 chr11 87374079 87374260 -61409212 - HsTC2 DNA Tc2 -1713 185 3 256 284 98 0 chr11 87374309 87374411 -61409061 - MIR SINE MIR -87 175 64 303 345 55 12 chr11 87375052 87375217 -61408255 + L1M4 LINE L1 3712 3883 -2263 2173 102 6 35 chr11 87375533 87375846 -61407626 - AluSx SINE Alu -8 304 1 266 287 266 0 chr11 87376686 87376829 -61406643 + MIR SINE MIR 64 244 -18 372 293 53 7 chr11 87376951 87377101 -61406371 + MIR3 SINE MIR 45 201 -7 224 296 11 57 chr11 87377880 87377968 -61405504 - MIR SINE MIR -74 188 105 226 326 11 0 chr11 87378309 87378401 -61405071 + GA-rich Low_complexity Low_complexity 2 94 0 311 293 69 43 chr11 87378411 87378599 -61404873 + MLT1K LTR MaLR 395 587 -1 1472 74 79 0 chr11 87378680 87378896 -61404576 - L1PA8 LINE L1 -1 6171 5939 272 385 24 0 chr11 87379016 87379184 -61404288 + MIR SINE MIR 41 211 -51 2723 84 3 43 chr11 87379231 87379349 -61404123 + THE1C LTR MaLR 1 122 -253 2018 142 72 17 chr11 87379349 87379694 -61403778 - THE1B LTR MaLR 0 364 1 2723 84 3 43 chr11 87379694 87379966 -61403506 + THE1C LTR MaLR 122 375 0 382 346 19 65 chr11 87380580 87380951 -61402521 + L2 LINE L2 2698 3053 -219 821 314 12 16 chr11 87381006 87381264 -61402208 - MIR SINE MIR -4 258 2 287 260 34 82 chr11 87381818 87381964 -61401508 + L2 LINE L2 3170 3308 -5 424 384 28 5 chr11 87382685 87382896 -61400576 + MIR SINE MIR 3 218 -44 1580 83 5 0 chr11 87384220 87384425 -61399047 + AluSp SINE Alu 1 206 -107 288 102 0 68 chr11 87384425 87384484 -61398988 + AluSp SINE Alu 248 302 -1 568 219 135 34 chr11 87384544 87384722 -61398750 - MIR SINE MIR -58 204 9 316 280 75 28 chr11 87385551 87385658 -61397814 - L2 LINE L2 -8 3264 3153 518 291 50 35 chr11 87385672 87385871 -61397601 + MIR SINE MIR 20 221 -41 468 296 30 24 chr11 87386167 87386367 -61397105 - MIR SINE MIR -60 202 5 416 316 127 18 chr11 87386644 87386872 -61396600 - L3 LINE CR1 -358 1219 967 187 103 26 51 chr11 87387748 87387787 -61395685 - MIR SINE MIR -3 259 222 * 293 354 67 73 chr11 87387755 87388204 -61395268 - L2 LINE L2 -15 3257 2812 238 280 93 126 chr11 87388488 87388702 -61394770 - MIR SINE MIR -6 256 50 386 362 81 0 chr11 87388869 87389018 -61394454 + MIR3 SINE MIR 38 198 -10 339 346 86 88 chr11 87389171 87389625 -61393847 - L2 LINE L2 -8 3264 2812 21 0 0 0 chr11 87390033 87390054 -61393418 + AT_rich Low_complexity Low_complexity 1 21 0 2517 70 0 6 chr11 87390975 87391288 -61392184 + AluY SINE Alu 1 311 0 21 0 0 0 chr11 87391299 87391320 -61392152 + AT_rich Low_complexity Low_complexity 1 21 0 207 69 0 0 chr11 87391468 87391497 -61391975 + (A)n Simple_repeat Simple_repeat 1 29 0 184 330 198 19 chr11 87391506 87391612 -61391860 - MIR SINE MIR -118 144 20 187 303 184 61 chr11 87391944 87392221 -61391251 + L2 LINE L2 2573 2883 -431 286 367 77 70 chr11 87392291 87392577 -61390895 + L2 LINE L2 2981 3268 -4 1007 263 4 12 chr11 87392579 87392819 -61390653 + MER8 DNA MER2_type 1 238 -1 181 229 104 0 chr11 87393255 87393303 -61390169 + MIR3 SINE MIR 104 156 -52 187 275 211 9 chr11 87393588 87393697 -61389775 - L2 LINE L2 0 3313 3183 337 353 81 7 chr11 87393788 87393924 -61389548 - L2 LINE L2 -206 3066 2921 630 323 57 16 chr11 87394453 87394701 -61388771 - MIR SINE MIR 0 262 5 300 304 52 10 chr11 87394766 87394891 -61388581 - MIR SINE MIR -45 163 38 555 330 93 31 chr11 87395173 87395625 -61387847 + L2 LINE L2 784 1263 -2051 246 250 0 0 chr11 87395790 87395862 -61387610 + GA-rich Low_complexity Low_complexity 2 73 0 400 311 130 37 chr11 87395870 87396224 -61387248 + L2 LINE L2 1404 1790 -1524 550 336 20 16 chr11 87396350 87396600 -61386872 - MIR SINE MIR 0 262 12 204 244 0 0 chr11 87397114 87397155 -61386317 + L2 LINE L2 3211 3251 -21 390 154 154 26 chr11 87397315 87397432 -61386040 - MIR SINE MIR -65 197 66 713 200 12 0 chr11 87397604 87397769 -61385703 + GA-rich Low_complexity Low_complexity 4 170 0 1439 199 12 0 chr11 87397786 87398037 -61385435 + AluSx SINE Alu 1 254 -58 183 42 0 0 chr11 87398037 87398061 -61385411 + (GA)n Simple_repeat Simple_repeat 1 24 0 270 309 64 9 chr11 87398474 87398584 -61384888 - MIR SINE MIR -72 190 75 21 0 0 0 chr11 87398900 87398921 -61384551 + AT_rich Low_complexity Low_complexity 1 21 0 2389 100 0 0 chr11 87398977 87399286 -61384186 + AluSg1 SINE Alu 1 309 0 189 0 0 0 chr11 87399314 87399335 -61384137 + (TC)n Simple_repeat Simple_repeat 1 21 0 198 0 0 0 chr11 87399431 87399453 -61384019 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 5302 162 26 35 chr11 87399453 87399547 -61383925 - L1PB3 LINE L1 -6 6148 6055 3408 78 0 16 chr11 87399547 87399998 -61383474 - MLT2A1 LTR ERVL 0 444 1 5302 162 26 35 chr11 87399998 87401940 -61381532 - L1PB3 LINE L1 -99 6055 4125 382 281 252 30 chr11 87402190 87402492 -61380980 - MLT1L LTR MaLR -43 572 204 299 341 0 0 chr11 87402500 87402585 -61380887 + L2 LINE L2 3193 3277 -36 231 240 20 0 chr11 87402654 87402704 -61380768 + MIR SINE MIR 1 51 -211 567 319 38 45 chr11 87403050 87403495 -61379977 - L1ME3 LINE L1 -215 5947 5506 324 0 0 0 chr11 87403579 87403615 -61379857 + (CA)n Simple_repeat Simple_repeat 2 37 0 509 255 99 6 chr11 87403657 87403818 -61379654 + MIR SINE MIR 87 262 0 541 277 56 56 chr11 87403841 87404054 -61379418 - MIR SINE MIR -48 214 2 322 242 99 0 chr11 87404351 87404442 -61379030 - MIR SINE MIR -81 181 82 765 249 42 70 chr11 87404851 87405209 -61378263 - L1MC4 LINE L1 -145 7897 7550 357 136 0 0 chr11 87405207 87405266 -61378206 + L1MA4A LINE L1 5922 5980 -323 * 384 319 18 9 chr11 87405320 87405433 -61378039 + L3 LINE CR1 1240 1353 -224 480 333 95 17 chr11 87405450 87405681 -61377791 - MIR SINE MIR 0 262 14 21 0 0 0 chr11 87405811 87405832 -61377640 + AT_rich Low_complexity Low_complexity 1 21 0 443 123 0 0 chr11 87407001 87407074 -61376398 + L1MA2 LINE L1 6232 6304 0 23 0 0 0 chr11 87407074 87407097 -61376375 + AT_rich Low_complexity Low_complexity 1 23 0 386 176 165 12 chr11 87407307 87407486 -61375986 - AluJb SINE Alu 0 367 176 1500 240 145 16 chr11 87407523 87408028 -61375444 + L1PA12 LINE L1 1 570 -7011 240 35 0 0 chr11 87408129 87408158 -61375314 + (A)n Simple_repeat Simple_repeat 1 29 0 270 264 180 6 chr11 87408472 87408639 -61374833 + L1ME LINE L1 5355 5550 -614 331 263 102 44 chr11 87409485 87409622 -61373850 - MIR SINE MIR -18 244 100 196 309 302 13 chr11 87409658 87409807 -61373665 - MIR SINE MIR -70 192 1 21 71 0 0 chr11 87410168 87410210 -61373262 + AT_rich Low_complexity Low_complexity 1 42 0 609 212 194 12 chr11 87410523 87410688 -61372784 + MIR SINE MIR 2 196 -66 2187 82 24 14 chr11 87410690 87411021 -61372451 - AluSp SINE Alu 0 313 3 452 292 111 27 chr11 87411278 87411510 -61371962 + MIR SINE MIR 10 256 -6 224 327 164 0 chr11 87411523 87411633 -61371839 - L2 LINE L2 -4 3309 3182 313 346 39 24 chr11 87411750 87411877 -61371595 - MIR SINE MIR -63 145 17 264 330 72 21 chr11 87412040 87412137 -61371335 + L2 LINE L2 3133 3234 -38 195 100 0 0 chr11 87412731 87412761 -61370711 + (TGGA)n Simple_repeat Simple_repeat 1 30 0 372 22 0 0 chr11 87412975 87413020 -61370452 + (TG)n Simple_repeat Simple_repeat 2 46 0 1295 182 128 18 chr11 87413100 87413429 -61370043 - MLT1A1 LTR MaLR 0 365 1 234 217 193 0 chr11 87413585 87413668 -61369804 + L2 LINE L2 3212 3310 -3 393 350 186 19 chr11 87413814 87414180 -61369292 + L2 LINE L2 2887 3313 0 310 199 66 86 chr11 87414669 87414702 -61368770 + L1M4 LINE L1 3056 3088 -3058 1912 177 0 3 chr11 87414702 87415012 -61368460 + AluSx SINE Alu 3 311 -1 310 199 66 86 chr11 87415012 87415129 -61368343 + L1M4 LINE L1 3088 3203 -2943 282 247 0 0 chr11 87415899 87415976 -61367496 + GA-rich Low_complexity Low_complexity 3 79 0 314 223 146 39 chr11 87416037 87416140 -61367332 + L2 LINE L2 3184 3297 -16 21 0 0 0 chr11 87416694 87416715 -61366757 + AT_rich Low_complexity Low_complexity 1 21 0 439 310 137 32 chr11 87416995 87417308 -61366164 + L1ME4a LINE L1 5497 5842 -279 213 333 120 9 chr11 87418562 87418670 -61364802 + L2 LINE L2 3152 3271 -1 285 353 37 21 chr11 87418811 87419001 -61364471 - L2 LINE L2 -276 2996 2804 212 233 0 0 chr11 87419619 87419662 -61363810 + GA-rich Low_complexity Low_complexity 3 45 0 1108 237 24 75 chr11 87419906 87420399 -61363073 + Charlie4a DNA MER1_type 23 490 -18 216 323 143 0 chr11 87421281 87421414 -61362058 - MIR SINE MIR -20 242 91 272 309 45 27 chr11 87421513 87421623 -61361849 + MIR SINE MIR 55 166 -96 298 338 122 20 chr11 87421964 87422112 -61361360 + L2 LINE L2 3094 3256 -16 218 311 0 0 chr11 87423077 87423138 -61360334 + GA-rich Low_complexity Low_complexity 4 64 0 362 292 62 9 chr11 87423184 87423297 -61360175 - L2 LINE L2 -17 3255 3137 409 291 103 24 chr11 87423418 87423583 -61359889 + MIR SINE MIR 56 233 -29 248 230 40 14 chr11 87424114 87424255 -61359217 + L1MC5 LINE L1 7650 7901 -141 24 0 0 0 chr11 87424259 87424283 -61359189 + AT_rich Low_complexity Low_complexity 1 24 0 2034 102 0 0 chr11 87424506 87424811 -61358661 + AluSx SINE Alu 47 351 0 180 0 0 0 chr11 87424917 87424937 -61358535 + (C)n Simple_repeat Simple_repeat 1 20 0 534 119 0 0 chr11 87424963 87425047 -61358425 + (A)n Simple_repeat Simple_repeat 1 84 0 567 92 0 0 chr11 87425075 87425151 -61358321 + Alu SINE Alu 222 297 -12 2975 156 22 67 chr11 87425434 87426075 -61357397 + LTR9 LTR ERV1 1 612 0 1543 175 88 0 chr11 87427243 87427365 -61356107 + AluSx SINE Alu 1 111 -201 204 40 0 0 chr11 87427365 87427390 -61356082 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1543 175 88 0 chr11 87427390 87427541 -61355931 + AluSx SINE Alu 111 298 -14 259 313 8 76 chr11 87427717 87427848 -61355624 - MIR SINE MIR -109 153 32 1936 205 8 3 chr11 87428033 87428419 -61355053 - MER54A LTR ERVL -25 876 489 372 255 0 10 chr11 87428608 87428710 -61354762 + LTR33 LTR ERVL 1 101 -420 182 286 33 82 chr11 87429211 87429393 -61354079 + L2 LINE L2 2690 2862 -452 353 336 93 34 chr11 87429475 87429796 -61353676 + L2 LINE L2 2932 3271 -1 2123 124 140 8 chr11 87430556 87430934 -61352538 + MSTA LTR MaLR 1 428 0 672 231 110 71 chr11 87430970 87431307 -61352165 - MLT1H LTR MaLR -4 545 196 1838 154 4 4 chr11 87431679 87431959 -61351513 + AluSx SINE Alu 1 280 -32 1782 171 0 17 chr11 87431990 87432289 -61351183 + AluJb SINE Alu 1 294 -18 929 266 98 63 chr11 87433218 87433676 -61349796 + MER77 LTR ERV1 126 599 -6 223 365 0 0 chr11 87433765 87433828 -61349644 + MER91B DNA MER1_type 1 63 -127 2126 114 28 0 chr11 87434471 87434760 -61348712 - AluSq SINE Alu -16 297 1 414 348 195 16 chr11 87436286 87436364 -61347108 - L2 LINE L2 0 3313 3250 324 70 0 0 chr11 87436364 87436407 -61347065 + (CA)n Simple_repeat Simple_repeat 2 44 0 414 348 195 16 chr11 87436407 87436702 -61346770 - L2 LINE L2 -63 3250 2873 2923 56 2 29 chr11 87436714 87437107 -61346365 + MLT2A1 LTR ERVL 1 384 -60 183 80 0 0 chr11 87437107 87437132 -61346340 + (TA)n Simple_repeat Simple_repeat 2 26 0 2923 56 2 29 chr11 87437132 87437149 -61346323 + MLT2A1 LTR ERVL 384 400 -44 625 167 29 0 chr11 87437159 87437333 -61346139 + (TA)n Simple_repeat Simple_repeat 2 180 0 502 206 4 27 chr11 87437290 87437829 -61345643 + (TATATG)n Simple_repeat Simple_repeat 1 526 0 * 231 103 0 0 chr11 87437966 87438005 -61345467 + (TA)n Simple_repeat Simple_repeat 1 39 0 10191 108 0 9 chr11 87438019 87439538 -61343934 + HERV9 LTR ERV1 3899 5404 -2995 9818 108 14 10 chr11 87439538 87441064 -61342408 + HERV9 LTR ERV1 6868 8399 0 993 163 89 83 chr11 87441064 87441525 -61341947 + LTR12 LTR ERV1 1 277 -437 268 263 12 0 chr11 87441525 87441605 -61341867 + LTR30 LTR ERV1 544 624 -98 562 158 0 47 chr11 87441605 87441730 -61341742 + LTR12 LTR ERV1 49 714 0 262 250 39 122 chr11 87441755 87441911 -61341561 + L2 LINE L2 3171 3313 0 273 303 42 15 chr11 87442100 87442266 -61341206 - MIR SINE MIR -52 210 1 264 238 0 83 chr11 87442482 87442566 -61340906 + AluJ/FLAM SINE Alu 1 77 -225 2534 60 0 3 chr11 87442704 87443005 -61340467 + AluY SINE Alu 1 300 -11 1681 116 25 85 chr11 87443005 87443359 -61340113 - THE1C LTR MaLR -42 333 1 2276 157 22 18 chr11 87443359 87443810 -61339662 + L1MA9 LINE L1 5333 5785 -527 1944 104 0 57 chr11 87443810 87444107 -61339365 + AluSx SINE Alu 1 280 -32 366 61 0 0 chr11 87444107 87444156 -61339316 + (GGAA)n Simple_repeat Simple_repeat 4 52 0 51 70 0 0 chr11 87444179 87444279 -61339193 + AT_rich Low_complexity Low_complexity 1 100 0 1381 171 29 53 chr11 87444289 87444664 -61338808 + L1MA9 LINE L1 5767 6132 -180 394 35 0 35 chr11 87444664 87444721 -61338751 - MLT2A2 LTR ERVL 0 453 399 278 51 0 0 chr11 87444754 87444793 -61338679 - MLT2A2 LTR ERVL -413 40 2 711 172 51 0 chr11 87444794 87444951 -61338521 + L1MA9 LINE L1 6128 6292 -20 2984 70 5 0 chr11 87445008 87445405 -61338067 - MLT2A1 LTR ERVL -45 399 1 867 156 40 0 chr11 87445410 87445583 -61337889 + L1MA9 LINE L1 6133 6312 0 1930 138 46 3 chr11 87445654 87445979 -61337493 + MER2 DNA MER2_type 7 345 0 193 235 0 78 chr11 87446120 87446171 -61337301 + L2 LINE L2 3133 3179 -93 530 272 28 11 chr11 87446351 87446531 -61336941 + MER117 DNA MER1_type 15 197 0 312 27 0 0 chr11 87446584 87446621 -61336851 + (GA)n Simple_repeat Simple_repeat 1 37 0 343 270 26 26 chr11 87446682 87446797 -61336675 + L2 LINE L2 3199 3313 0 301 290 86 0 chr11 87446892 87446985 -61336487 - L1MC4 LINE L1 -1327 6715 6615 324 0 0 0 chr11 87446985 87447021 -61336451 + (CA)n Simple_repeat Simple_repeat 1 36 0 389 21 0 0 chr11 87447024 87447071 -61336401 - L1P LINE L1 -743 5411 5365 10188 106 0 9 chr11 87447214 87448727 -61334745 + HERV9 LTR ERV1 3905 5404 -2995 9840 109 13 10 chr11 87448727 87450254 -61333218 + HERV9 LTR ERV1 6868 8399 0 985 152 16 148 chr11 87450254 87450715 -61332757 + LTR12 LTR ERV1 1 277 -437 268 263 12 0 chr11 87450715 87450795 -61332677 + LTR30 LTR ERV1 544 624 -98 562 158 0 47 chr11 87450795 87450920 -61332552 + LTR12 LTR ERV1 49 714 0 262 250 39 122 chr11 87450945 87451101 -61332371 + L2 LINE L2 3171 3313 0 273 303 42 15 chr11 87451290 87451456 -61332016 - MIR SINE MIR -52 210 1 264 238 0 83 chr11 87451672 87451756 -61331716 + AluJ/FLAM SINE Alu 1 77 -225 2611 58 0 3 chr11 87451894 87452204 -61331268 + AluY SINE Alu 1 309 -2 444 307 15 44 chr11 87452304 87452509 -61330963 + MIR SINE MIR 18 216 -46 964 275 97 65 chr11 87452816 87452876 -61330596 + MLT1H LTR MaLR 73 130 -419 2271 122 0 0 chr11 87452876 87453187 -61330285 + AluSq SINE Alu 1 311 -2 964 275 97 65 chr11 87453187 87453588 -61329884 + MLT1H LTR MaLR 130 549 0 513 294 60 22 chr11 87454868 87455052 -61328420 - MIR SINE MIR -52 210 20 200 345 35 23 chr11 87455214 87455301 -61328171 + MIR SINE MIR 23 110 -152 605 232 40 28 chr11 87455349 87455526 -61327946 - L2 LINE L2 0 3313 3135 254 374 42 53 chr11 87455901 87456091 -61327381 - MIR SINE MIR -72 190 3 3440 70 23 0 chr11 87456379 87456822 -61326650 + MLT2A2 LTR ERVL 1 453 0 2298 113 3 0 chr11 87457192 87457501 -61325971 - AluSp SINE Alu -3 310 1 494 262 26 58 chr11 87457501 87457692 -61325780 + MIR SINE MIR 66 250 -12 591 289 184 39 chr11 87457876 87458415 -61325057 + L2 LINE L2 2343 2959 -355 353 324 64 6 chr11 87459310 87459483 -61323989 + MIR SINE MIR 73 255 -7 537 265 12 42 chr11 87459613 87459779 -61323693 + MER58A DNA MER1_type 1 161 0 1489 222 33 70 chr11 87459780 87460298 -61323174 - MLT1D LTR MaLR -1 504 6 851 254 97 4 chr11 87460589 87460817 -61322655 + MIR SINE MIR 10 258 -4 255 229 0 0 chr11 87461214 87461262 -61322210 + Zaphod DNA AcHobo 5 52 -3979 420 153 94 0 chr11 87461912 87461997 -61321475 + MER115 DNA AcHobo 601 693 0 190 410 87 26 chr11 87462984 87463179 -61320293 - L2 LINE L2 -8 3264 3058 2097 132 138 8 chr11 87463732 87464110 -61319362 + MSTA LTR MaLR 1 427 -1 392 396 7 0 chr11 87465414 87465568 -61317904 - L2 LINE L2 -582 2732 2578 520 273 105 38 chr11 87466385 87466594 -61316878 - MIR SINE MIR -20 242 20 185 62 0 31 chr11 87466982 87467014 -61316458 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1377 169 20 20 chr11 87467024 87467320 -61316152 - L1MA9 LINE L1 -10 6302 6007 21 36 0 0 chr11 87467327 87467355 -61316117 + AT_rich Low_complexity Low_complexity 1 28 0 872 178 0 0 chr11 87467358 87467515 -61315957 - L1PA16 LINE L1 -392 5774 5618 * 1582 167 57 30 chr11 87467514 87467880 -61315592 + L1PA16 LINE L1 5791 6166 0 1623 226 37 113 chr11 87468307 87468981 -61314491 + MLT1E2 LTR MaLR 2 626 0 24 0 0 0 chr11 87469012 87469036 -61314436 + AT_rich Low_complexity Low_complexity 1 24 0 645 168 67 11 chr11 87469161 87469340 -61314132 + Zaphod DNA AcHobo 602 790 -3241 * 1526 294 27 4 chr11 87469334 87469821 -61313651 - Zaphod DNA AcHobo -3445 586 89 278 130 0 19 chr11 87470577 87470631 -61312841 + (TCC)n Simple_repeat Simple_repeat 2 54 0 422 341 34 10 chr11 87470860 87471065 -61312407 + MIR SINE MIR 22 231 -31 2681 174 32 20 chr11 87471065 87471572 -61311900 + MLT2B2 LTR ERVL 1 513 -2 378 109 0 0 chr11 87471534 87471589 -61311883 - MLT2A2 LTR ERVL 0 453 399 * 189 147 0 0 chr11 87471591 87471625 -61311847 + (TATATG)n Simple_repeat Simple_repeat 3 36 0 766 69 0 0 chr11 87471626 87471727 -61311745 - MLT2A2 LTR ERVL -40 413 313 314 320 21 0 chr11 87471727 87471824 -61311648 + L1MC4 LINE L1 6605 6703 -1339 * 346 290 43 0 chr11 87471770 87471863 -61311609 - L1MC4 LINE L1 -1339 6703 6607 22 35 0 0 chr11 87471900 87471929 -61311543 + AT_rich Low_complexity Low_complexity 1 29 0 1199 271 89 17 chr11 87472152 87472558 -61310914 + LTR16A LTR ERVL 16 450 0 2728 276 68 57 chr11 87472563 87473489 -61309983 + HAL1 LINE L1 637 1551 -956 2219 139 3 0 chr11 87473489 87473799 -61309673 - AluSx SINE Alu 0 312 2 2728 276 68 57 chr11 87473799 87474402 -61309070 + HAL1 LINE L1 1551 2146 -361 2310 118 20 3 chr11 87474402 87474750 -61308722 + THE1A LTR MaLR 2 355 0 11554 93 12 3 chr11 87474750 87476315 -61307157 + THE1A-int LTR MaLR 1 1580 0 2131 129 31 17 chr11 87476315 87476665 -61306807 + THE1A LTR MaLR 1 355 0 2728 276 68 57 chr11 87476665 87476829 -61306643 + HAL1 LINE L1 2145 2352 -155 226 397 22 15 chr11 87477319 87477455 -61306017 + MIR3 SINE MIR 7 143 -65 648 363 78 11 chr11 87477505 87477863 -61305609 + L2 LINE L2 2403 2784 -530 7489 173 26 24 chr11 87477882 87479605 -61303867 + L1MA9 LINE L1 3594 5336 -976 1885 127 28 79 chr11 87479605 87479646 -61303826 - THE1C LTR MaLR -2 373 331 2498 63 0 3 chr11 87479646 87479947 -61303525 + AluY SINE Alu 1 300 -11 1885 127 28 79 chr11 87479947 87480298 -61303174 - THE1C LTR MaLR -44 331 1 7489 173 26 24 chr11 87480298 87480749 -61302723 + L1MA9 LINE L1 5336 5785 -527 1944 104 0 57 chr11 87480749 87481046 -61302426 + AluSx SINE Alu 1 280 -32 366 61 0 0 chr11 87481046 87481095 -61302377 + (GGAA)n Simple_repeat Simple_repeat 4 52 0 51 70 0 0 chr11 87481118 87481218 -61302254 + AT_rich Low_complexity Low_complexity 1 100 0 1381 171 29 53 chr11 87481228 87481603 -61301869 + L1MA9 LINE L1 5767 6132 -180 394 35 0 35 chr11 87481603 87481660 -61301812 - MLT2A2 LTR ERVL 0 453 399 278 51 0 0 chr11 87481693 87481732 -61301740 - MLT2A1 LTR ERVL -404 40 2 711 172 51 0 chr11 87481733 87481890 -61301582 + L1MA9 LINE L1 6128 6292 -20 2984 70 5 0 chr11 87481947 87482344 -61301128 - MLT2A1 LTR ERVL -45 399 1 867 156 40 0 chr11 87482349 87482522 -61300950 + L1MA9 LINE L1 6133 6312 0 1930 138 46 3 chr11 87482593 87482918 -61300554 + MER2 DNA MER2_type 7 345 0 193 235 0 78 chr11 87483059 87483110 -61300362 + L2 LINE L2 3133 3179 -93 549 260 28 17 chr11 87483290 87483471 -61300001 + MER117 DNA MER1_type 15 197 0 312 27 0 0 chr11 87483524 87483561 -61299911 + (GA)n Simple_repeat Simple_repeat 1 37 0 351 261 26 26 chr11 87483622 87483737 -61299735 + L2 LINE L2 3199 3313 0 301 290 86 0 chr11 87483834 87483927 -61299545 - L1MC4 LINE L1 -1327 6715 6615 324 0 0 0 chr11 87483927 87483963 -61299509 + (CA)n Simple_repeat Simple_repeat 1 36 0 509 16 0 0 chr11 87483966 87484028 -61299444 - L1P LINE L1 -743 5411 5350 5921 43 1 4 chr11 87484029 87484765 -61298707 + L1PA5 LINE L1 5420 6153 -1 31 0 0 0 chr11 87484765 87484796 -61298676 + AT_rich Low_complexity Low_complexity 1 31 0 409 318 45 0 chr11 87484830 87484962 -61298510 + L2 LINE L2 2932 3069 -203 298 358 139 0 chr11 87486637 87486774 -61296698 - L2 LINE L2 -1 3271 3116 398 235 27 84 chr11 87487044 87487204 -61296268 + MIR SINE MIR 55 206 -56 367 365 98 26 chr11 87488430 87488737 -61294735 - L2 LINE L2 -430 2884 2556 393 210 110 59 chr11 87489256 87489475 -61293997 - L1MEd LINE L1 -4862 1257 1028 4834 157 24 30 chr11 87489492 87491050 -61292422 - L1PB4 LINE L1 -1 6155 4614 3245 199 34 7 chr11 87491045 87491817 -61291655 + L1PB4 LINE L1 3832 4624 -1522 * 580 348 75 63 chr11 87491845 87492784 -61290688 - L1MEd LINE L1 -5151 968 19 24 0 0 0 chr11 87492901 87492925 -61290547 + AT_rich Low_complexity Low_complexity 1 24 0 836 293 27 8 chr11 87492925 87493184 -61290288 + L3 LINE CR1 1063 1326 -251 389 338 15 22 chr11 87493219 87493355 -61290117 + MIR3 SINE MIR 66 200 -8 1745 172 0 20 chr11 87493557 87493859 -61289613 + AluJo SINE Alu 1 296 -16 398 290 118 50 chr11 87493871 87494092 -61289380 + MIR SINE MIR 20 255 -7 298 314 51 17 chr11 87494849 87494967 -61288505 + MIR SINE MIR 22 143 -119 2531 122 3 5 chr11 87495199 87495575 -61287897 - THE1C LTR MaLR 0 375 1 180 369 0 0 chr11 87495673 87495738 -61287734 - MIR SINE MIR -1 261 197 192 158 18 88 chr11 87495787 87495844 -61287628 - MIR SINE MIR -80 182 130 197 269 237 0 chr11 87496554 87496647 -61286825 - MIR SINE MIR -147 115 1 410 271 65 35 chr11 87496755 87496925 -61286547 + MIR3 SINE MIR 8 182 -26 3003 179 63 7 chr11 87497234 87497838 -61285634 - LTR9B LTR ERV1 0 644 7 1221 180 2 16 chr11 87497838 87498101 -61285371 - HUERS-P3 LTR ERV1 0 8918 7168 14373 120 31 21 chr11 87498730 87501714 -61281758 - HUERS-P3 LTR ERV1 -775 6643 878 2140 174 70 2 chr11 87501727 87502140 -61281332 + LTR8 LTR ERV1 1 441 -250 7355 169 55 22 chr11 87502140 87504049 -61279423 - HUERS-P3 LTR ERV1 -4776 2642 741 315 145 36 0 chr11 87504050 87504133 -61279339 + GA-rich Low_complexity Low_complexity 1 86 0 250 230 130 10 chr11 87504146 87504246 -61279226 - HUERS-P3 LTR ERV1 -6876 542 431 588 214 14 29 chr11 87504254 87504394 -61279078 - HUERS-P3 LTR ERV1 -6872 546 409 601 109 0 50 chr11 87504397 87504498 -61278974 - HUERS-P3 LTR ERV1 -7322 96 1 2950 172 53 10 chr11 87504498 87505104 -61278368 - LTR9B LTR ERV1 0 644 13 225 286 221 0 chr11 87505138 87505292 -61278180 - MIR3 SINE MIR -4 204 17 241 264 165 25 chr11 87506080 87506201 -61277271 - MIR SINE MIR -3 259 122 1644 147 61 61 chr11 87506456 87506831 -61276641 + THE1C LTR MaLR 1 375 0 239 296 19 0 chr11 87506869 87506923 -61276549 - MIR SINE MIR -133 75 21 2168 139 0 0 chr11 87506992 87507293 -61276179 - AluSx SINE Alu -11 301 1 1699 179 34 11 chr11 87507309 87507661 -61275811 - MLT1A1 LTR MaLR -5 360 1 323 309 14 7 chr11 87507978 87508117 -61275355 + L1ME LINE L1 5688 5827 -294 285 319 101 42 chr11 87508659 87508778 -61274694 + MIR3 SINE MIR 9 134 -74 264 219 12 61 chr11 87508921 87509003 -61274469 - MIR SINE MIR 0 262 185 * 2023 286 67 46 chr11 87508994 87509372 -61274100 - L2 LINE L2 0 3313 2945 1639 58 0 0 chr11 87509372 87509578 -61273894 + L1PA5 LINE L1 5946 6151 -3 2023 286 67 46 chr11 87509578 87509632 -61273840 - L2 LINE L2 -368 2945 2894 2383 88 0 7 chr11 87509632 87509940 -61273532 + AluY SINE Alu 1 306 -5 2023 286 67 46 chr11 87509940 87510402 -61273070 - L2 LINE L2 -419 2894 2375 554 278 35 6 chr11 87510412 87510581 -61272891 - MIR SINE MIR -76 186 13 336 282 19 10 chr11 87510823 87510926 -61272546 + MER5A DNA MER1_type 36 139 -50 321 200 62 0 chr11 87511062 87511142 -61272330 + MER5A DNA MER1_type 9 93 -96 306 0 0 0 chr11 87511503 87511537 -61271935 + (A)n Simple_repeat Simple_repeat 1 34 0 401 200 219 0 chr11 87511537 87511642 -61271830 + MER5A DNA MER1_type 61 188 -1 671 282 42 14 chr11 87511752 87511968 -61271504 - MIR SINE MIR -39 223 2 434 319 123 6 chr11 87512467 87512630 -61270842 - MIR SINE MIR -56 206 25 2245 119 0 0 chr11 87512678 87512981 -61270491 + AluY SINE Alu 1 303 -8 1228 220 102 30 chr11 87513566 87513930 -61269542 - MSTD LTR MaLR -6 390 1 1383 219 24 61 chr11 87514557 87514936 -61268536 - MLT1A1 LTR MaLR 0 365 1 288 284 105 11 chr11 87515457 87515552 -61267920 - L2 LINE L2 -15 3298 3195 228 67 0 0 chr11 87515999 87516029 -61267443 + (CAATT)n Simple_repeat Simple_repeat 5 34 0 288 0 0 0 chr11 87516180 87516212 -61267260 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 1988 131 7 7 chr11 87516241 87516546 -61266926 - AluSx SINE Alu -7 305 1 340 194 143 20 chr11 87516595 87516693 -61266779 + MIR SINE MIR 53 162 -100 764 284 5 0 chr11 87516858 87517052 -61266420 + MIR SINE MIR 56 250 -12 1368 62 0 11 chr11 87517757 87517936 -61265536 + AluY SINE Alu 132 308 -3 484 254 42 14 chr11 87518549 87518691 -61264781 - MIR3 SINE MIR -20 188 43 294 292 0 31 chr11 87518734 87518864 -61264608 + L1MC4a LINE L1 4877 5002 -1144 30 59 0 0 chr11 87518897 87518948 -61264524 + AT_rich Low_complexity Low_complexity 1 51 0 499 284 30 17 chr11 87519604 87519836 -61263636 + L1MC4a LINE L1 5355 5589 -2219 1323 205 26 68 chr11 87519893 87520273 -61263199 + MLT1A1 LTR MaLR 2 365 0 721 286 17 4 chr11 87521378 87521616 -61261856 + L1MC4a LINE L1 5679 5919 -1889 758 226 91 36 chr11 87521700 87521921 -61261551 - MIR SINE MIR -28 234 2 195 42 0 0 chr11 87522108 87522132 -61261340 + (TG)n Simple_repeat Simple_repeat 1 24 0 180 302 186 0 chr11 87522718 87522804 -61260668 + L2 LINE L2 3203 3304 -9 576 297 40 20 chr11 87522826 87523075 -61260397 - MIR SINE MIR 0 262 9 1006 271 121 12 chr11 87523831 87524171 -61259301 + LTR16A LTR ERVL 52 428 -22 302 143 0 48 chr11 87524257 87524320 -61259152 + L1PA16 LINE L1 6107 6166 0 617 268 28 14 chr11 87524908 87525121 -61258351 - MIR SINE MIR -30 232 17 201 175 25 0 chr11 87525182 87525222 -61258250 + L2 LINE L2 3214 3254 -18 2041 232 41 103 chr11 87525797 87526522 -61256950 - MER97b DNA MER1_type? -6 888 234 2390 182 37 2 chr11 87526522 87526977 -61256495 + L1PB4 LINE L1 5686 6156 0 2041 232 41 103 chr11 87526977 87527198 -61256274 - MER97b DNA MER1_type? -660 234 1 234 321 25 0 chr11 87527219 87527300 -61256172 - MIR SINE MIR -25 237 155 * 288 186 129 0 chr11 87527288 87527358 -61256114 + MIR SINE MIR 184 262 0 2377 181 77 7 chr11 87527396 87527838 -61255634 - MER70B LTR ERVL -102 476 4 352 295 25 10 chr11 87527840 87527974 -61255498 - MIR SINE MIR -32 176 32 318 314 34 17 chr11 87528430 87528548 -61254924 + L2 LINE L2 3180 3299 -14 307 300 85 0 chr11 87528587 87528717 -61254755 + MIR SINE MIR 48 188 -74 1616 151 0 0 chr11 87528738 87528970 -61254502 + AluJb SINE Alu 1 232 -80 216 0 0 0 chr11 87528990 87529014 -61254458 + (A)n Simple_repeat Simple_repeat 1 24 0 188 338 40 14 chr11 87529466 87529540 -61253932 - L2 LINE L2 -96 3176 3101 2399 163 65 2 chr11 87530808 87531208 -61252264 - MSTB LTR MaLR -1 425 1 183 300 50 0 chr11 87531592 87531652 -61251820 - L2 LINE L2 -89 3224 3162 222 62 0 0 chr11 87531780 87531812 -61251660 + (TC)n Simple_repeat Simple_repeat 1 32 0 279 331 67 17 chr11 87532232 87532263 -61251209 - MIR SINE MIR -73 189 161 2104 106 0 65 chr11 87532263 87532585 -61250887 - AluSx SINE Alu -9 303 3 279 331 67 17 chr11 87532585 87532731 -61250741 - MIR SINE MIR -101 161 3 664 217 38 0 chr11 87534875 87535032 -61248440 - MER5A DNA MER1_type -4 185 23 642 278 81 17 chr11 87535498 87535732 -61247740 - MIR SINE MIR 0 262 14 599 277 21 34 chr11 87535922 87536157 -61247315 - LTR33 LTR ERVL -2 519 288 2038 216 38 28 chr11 87536299 87536794 -61246678 + MLT1E2 LTR MaLR 122 621 -5 257 237 93 68 chr11 87536806 87536924 -61246548 - LTR33 LTR ERVL -272 249 129 3356 206 93 32 chr11 87536985 87537172 -61246300 - MER69 DNA AcHobo 0 2526 2352 1792 163 71 0 chr11 87537172 87537497 -61245975 - MER7A DNA MER2_type 0 346 1 3356 206 93 32 chr11 87537497 87538323 -61245149 - MER69 DNA AcHobo -174 2352 1451 2899 200 40 56 chr11 87538338 87539067 -61244405 - MER69 DNA AcHobo -1809 717 1 737 236 52 119 chr11 87539097 87539452 -61244020 - MLT1J1 LTR MaLR 0 446 120 2024 113 0 0 chr11 87539452 87539726 -61243746 + AluSq SINE Alu 25 298 -15 737 236 52 119 chr11 87539726 87539773 -61243699 - MLT1J1 LTR MaLR -326 120 71 345 296 0 53 chr11 87540373 87540525 -61242947 - MIR SINE MIR -43 219 76 194 246 45 127 chr11 87540584 87540694 -61242778 - MIR SINE MIR -70 192 92 22 35 0 0 chr11 87540823 87540852 -61242620 + AT_rich Low_complexity Low_complexity 1 29 0 226 296 102 36 chr11 87541473 87541669 -61241803 - MIR SINE MIR -7 255 47 435 297 20 7 chr11 87541747 87541895 -61241577 - MIR SINE MIR -74 188 39 450 230 152 73 chr11 87543369 87543534 -61239938 - MER91A DNA MER1_type 0 196 19 294 294 54 0 chr11 87544101 87544193 -61239279 + MER117 DNA MER1_type 101 197 0 224 261 14 14 chr11 87544310 87544379 -61239093 + L2 LINE L2 3244 3312 -1 286 316 70 23 chr11 87544451 87544622 -61238850 + L2 LINE L2 3089 3267 -5 268 328 74 0 chr11 87545353 87545475 -61237997 - L2 LINE L2 -1 3271 3141 1761 190 50 39 chr11 87546115 87546573 -61236899 - MLT1C LTR MaLR -4 463 1 2054 85 35 0 chr11 87546816 87547076 -61236396 - AluSx SINE Alu -10 302 34 308 416 4 13 chr11 87547931 87548157 -61235315 - L2 LINE L2 -538 2776 2553 317 255 10 39 chr11 87548173 87548275 -61235197 - MER112 DNA MER1_type -1 259 161 21 95 0 0 chr11 87548316 87548379 -61235093 + AT_rich Low_complexity Low_complexity 1 63 0 358 352 94 18 chr11 87548610 87549002 -61234470 - L2 LINE L2 -956 2358 1937 2298 60 0 34 chr11 87549002 87549319 -61234153 + AluY SINE Alu 1 311 0 421 275 22 0 chr11 87549401 87549492 -61233980 + MER81 DNA DNA 22 114 0 2303 104 3 0 chr11 87550190 87550487 -61232985 + AluSq SINE Alu 1 298 -15 1125 167 48 9 chr11 87551096 87551306 -61232166 + MER20 DNA MER1_type 2 219 0 292 228 173 47 chr11 87551406 87551491 -61231981 + MIR SINE MIR 53 161 -101 1963 114 75 36 chr11 87551491 87551852 -61231620 - THE1C LTR MaLR 0 375 1 292 228 173 47 chr11 87551852 87551893 -61231579 + MIR SINE MIR 161 195 -67 27 49 0 0 chr11 87554966 87555007 -61228465 + GC_rich Low_complexity Low_complexity 1 41 0 27 0 0 0 chr11 87555405 87555432 -61228040 + GC_rich Low_complexity Low_complexity 1 27 0 421 250 119 12 chr11 87555828 87555988 -61227484 - MIR SINE MIR 0 262 86 256 298 114 8 chr11 87556573 87556704 -61226768 + MIR SINE MIR 47 191 -71 441 189 11 33 chr11 87556824 87556914 -61226558 - Tigger5 DNA MER2_type -1 2322 2235 295 149 0 21 chr11 87556920 87556967 -61226505 - Tigger5 DNA MER2_type -2276 47 2 5908 49 17 19 chr11 87557161 87557911 -61225561 + L1PA5 LINE L1 5406 6154 0 284 304 83 30 chr11 87558452 87558620 -61224852 + MIR SINE MIR 32 208 -54 232 264 272 8 chr11 87558608 87558733 -61224739 + MIR SINE MIR 94 251 -11 * 426 254 78 48 chr11 87558898 87559078 -61224394 + MIR SINE MIR 16 197 -62 343 375 128 7 chr11 87559191 87559487 -61223985 - L2 LINE L2 -9 3263 2932 1078 239 70 10 chr11 87560467 87560924 -61222548 - MLT1H1 LTR MaLR 0 555 23 697 239 17 34 chr11 87560925 87561159 -61222313 - L1MC5 LINE L1 -430 7531 7302 2288 91 7 3 chr11 87561362 87561659 -61221813 + AluSg SINE Alu 1 298 -12 546 220 168 21 chr11 87561937 87562128 -61221344 - L1MC5 LINE L1 -1900 5908 5690 270 381 34 51 chr11 87562232 87562526 -61220946 - L2 LINE L2 -1 3271 2983 22 0 0 0 chr11 87562956 87562978 -61220494 + AT_rich Low_complexity Low_complexity 1 22 0 2903 152 154 115 chr11 87563063 87563436 -61220036 + L1MC3 LINE L1 6707 7064 -721 242 301 11 11 chr11 87563436 87563529 -61219943 + MLT1L LTR MaLR 31 123 -444 2903 152 154 115 chr11 87563529 87563925 -61219547 + L1MC3 LINE L1 7064 7602 -183 2266 251 48 49 chr11 87563942 87564369 -61219103 + HAL1 LINE L1 1213 1641 -866 1613 188 11 7 chr11 87564369 87564681 -61218791 - AluJb SINE Alu 0 313 1 2266 251 48 49 chr11 87564681 87565002 -61218470 + HAL1 LINE L1 1641 1961 -546 824 244 88 93 chr11 87565124 87565534 -61217938 + MLT1L LTR MaLR 200 607 -8 322 234 32 0 chr11 87565568 87565662 -61217810 + HAL1 LINE L1 1983 2079 -428 702 158 26 53 chr11 87566090 87566242 -61217230 + L1MB7 LINE L1 6014 6161 -23 1241 164 0 14 chr11 87566297 87566510 -61216962 + AluJo SINE Alu 84 293 -19 9450 127 11 25 chr11 87567129 87567864 -61215608 + L1MA2 LINE L1 3645 4389 -1915 3232 71 7 18 chr11 87567864 87568313 -61215159 + L1PA12 LINE L1 5725 6168 0 9450 127 11 25 chr11 87568313 87568330 -61215142 + L1MA2 LINE L1 4389 4405 -1899 207 0 0 0 chr11 87568330 87568353 -61215119 + (CA)n Simple_repeat Simple_repeat 2 24 0 9450 127 11 25 chr11 87568353 87568996 -61214476 + L1MA2 LINE L1 4405 5055 -1249 2119 142 0 13 chr11 87568996 87569312 -61214160 - AluSx SINE Alu 0 312 1 9450 127 11 25 chr11 87569312 87570575 -61212897 + L1MA2 LINE L1 5055 6266 -38 3382 110 34 10 chr11 87570575 87571074 -61212398 - MER9 LTR ERVK 0 511 1 9450 127 11 25 chr11 87571074 87571113 -61212359 + L1MA2 LINE L1 6266 6304 0 2410 102 0 3 chr11 87571194 87571507 -61211965 - AluSq SINE Alu -1 312 1 1541 201 45 3 chr11 87571540 87571893 -61211579 + L1ME2 LINE L1 5777 6144 -20 489 276 88 22 chr11 87573087 87573311 -61210161 - MIR SINE MIR -10 252 8 300 303 0 0 chr11 87573331 87573397 -61210075 - L2 LINE L2 -6 3307 3242 346 326 59 76 chr11 87573463 87573699 -61209773 - L2 LINE L2 0 3272 3041 6123 177 20 7 chr11 87573753 87575409 -61208063 + L1MC1 LINE L1 4651 6324 -9 296 296 233 19 chr11 87575888 87576047 -61207425 + MIR3 SINE MIR 10 202 -6 413 196 75 8 chr11 87576528 87576661 -61206811 - MER117 DNA MER1_type -35 162 21 584 276 86 37 chr11 87576713 87577039 -61206433 + LTR16A LTR ERVL 10 351 -99 279 291 91 36 chr11 87577381 87577491 -61205981 + MIR SINE MIR 36 151 -57 303 272 132 7 chr11 87577494 87577630 -61205842 + LTR37B LTR ERV1 7 159 -309 429 109 0 0 chr11 87577759 87577823 -61205649 + (TA)n Simple_repeat Simple_repeat 2 65 0 519 169 25 8 chr11 87577838 87577956 -61205516 + LTR37A LTR ERV1 294 413 -13 248 272 22 43 chr11 87578224 87578316 -61205156 - MIR SINE MIR -161 101 12 392 289 71 57 chr11 87578480 87578691 -61204781 + MIR SINE MIR 20 233 -29 25 0 0 0 chr11 87579429 87579454 -61204018 + AT_rich Low_complexity Low_complexity 1 25 0 578 319 137 24 chr11 87581125 87581460 -61202012 + L3 LINE CR1 1132 1504 -73 560 143 50 34 chr11 87581569 87581688 -61201784 - MER115 DNA AcHobo 0 693 573 273 330 36 12 chr11 87581699 87581899 -61201573 + L1ME LINE L1 28 595 -5935 1858 249 55 6 chr11 87582380 87583059 -61200413 + L1M4 LINE L1 3020 3731 -2415 2879 64 3 8 chr11 87583079 87583455 -61200017 - L1PA7 LINE L1 0 6154 5781 5123 56 16 4 chr11 87583555 87584661 -61198811 - L1PA8 LINE L1 -220 5952 4833 2979 42 3 11 chr11 87584661 87585026 -61198446 + L1PA4 LINE L1 5778 6155 0 2379 101 88 2 chr11 87585027 87585424 -61198048 + LTR15 LTR ERV1 24 454 -39 8041 96 10 48 chr11 87585433 87587112 -61196360 - L1P3 LINE L1 -4006 2455 841 2241 93 0 13 chr11 87587112 87587422 -61196050 - AluSg1 SINE Alu -3 306 1 8041 96 10 48 chr11 87587422 87587608 -61195864 - L1P3 LINE L1 -5620 841 649 3417 143 20 0 chr11 87587613 87588200 -61195272 + L1MA5 LINE L1 5700 6298 -2 25 31 0 0 chr11 87588209 87588241 -61195231 + AT_rich Low_complexity Low_complexity 1 32 0 3246 147 34 24 chr11 87588265 87588937 -61194535 + L1MA6 LINE L1 5599 6277 -23 760 232 49 13 chr11 87588952 87589176 -61194296 + MER95 LTR ERV 169 400 -31 1075 79 172 49 chr11 87589183 87589386 -61194086 + LTR8 LTR ERV1 357 584 -107 321 413 13 0 chr11 87589434 87589589 -61193883 - L2 LINE L2 -1974 1340 1184 269 282 82 0 chr11 87589579 87589689 -61193783 + MIR SINE MIR 65 183 -79 * 452 265 15 7 chr11 87590186 87590322 -61193150 + Charlie2 DNA MER1_type 1 137 -2725 257 254 28 14 chr11 87590395 87590466 -61193006 + CT-rich Low_complexity Low_complexity 3 74 0 1595 228 184 12 chr11 87590835 87591331 -61192141 + L1MC4 LINE L1 6460 7040 -1002 2084 127 13 7 chr11 87591331 87591639 -61191833 + AluSq SINE Alu 1 310 -3 1667 243 111 12 chr11 87591686 87592282 -61191190 + L1MC4 LINE L1 7238 7892 -150 33 25 0 0 chr11 87592333 87592373 -61191099 + AT_rich Low_complexity Low_complexity 1 40 0 1007 194 75 99 chr11 87592494 87592851 -61190621 + Charlie2 DNA MER1_type 2231 2595 -267 1943 76 79 0 chr11 87592851 87593156 -61190316 - AluY SINE Alu 0 327 1 1007 194 75 99 chr11 87593156 87593206 -61190266 + Charlie2 DNA MER1_type 2595 2645 -217 2207 120 0 13 chr11 87593206 87593522 -61189950 - AluSx SINE Alu 0 312 1 1007 194 75 99 chr11 87593522 87593728 -61189744 + Charlie2 DNA MER1_type 2645 2832 -30 304 165 0 69 chr11 87593729 87593961 -61189511 + AluJo SINE Alu 1 299 -3 790 203 72 8 chr11 87594115 87594351 -61189121 - MER33 DNA MER1_type -22 302 52 5643 113 43 3 chr11 87594361 87595505 -61187967 - L1PA13 LINE L1 -2 6161 4961 303 175 111 0 chr11 87595508 87595571 -61187901 - MER3 DNA MER1_type -97 112 43 1484 220 66 40 chr11 87595614 87596132 -61187340 - Charlie2a DNA MER1_type -1850 1012 482 338 177 10 73 chr11 87596676 87596772 -61186700 - Charlie2a DNA MER1_type -2704 158 69 966 229 42 0 chr11 87596782 87597044 -61186428 - L1M4 LINE L1 -1092 5054 4782 * 1485 181 65 1 chr11 87597041 87597531 -61185941 + L1M4 LINE L1 5092 5613 -561 15001 159 29 17 chr11 87597537 87601818 -61181654 + L1M1 LINE L1 23 5098 -2467 1993 151 3 16 chr11 87601818 87602123 -61181349 + AluSx SINE Alu 1 301 -11 15001 159 29 17 chr11 87602123 87602164 -61181308 + L1M1 LINE L1 5098 5137 -2428 810 150 14 21 chr11 87602167 87602345 -61181127 - AluJb SINE Alu 0 321 145 239 292 71 26 chr11 87602592 87602705 -61180767 - L2 LINE L2 -865 2449 2332 41 0 0 0 chr11 87602705 87602746 -61180726 + AT_rich Low_complexity Low_complexity 1 41 0 503 125 10 0 chr11 87602807 87602911 -61180561 + (TA)n Simple_repeat Simple_repeat 2 106 0 600 146 0 0 chr11 87602916 87603005 -61180467 - FLAM_C SINE Alu -19 124 36 189 195 0 0 chr11 87603049 87603090 -61180382 + (TATG)n Simple_repeat Simple_repeat 4 44 0 990 274 229 14 chr11 87603116 87603605 -61179867 - L2 LINE L2 -985 2329 1736 1618 177 46 3 chr11 87603718 87604063 -61179409 - L1MC2 LINE L1 -11 6333 5974 1634 121 127 17 chr11 87604063 87604518 -61178954 + MER51A LTR ERV1 1 634 0 4703 194 72 23 chr11 87604518 87606595 -61176877 - L1MC2 LINE L1 -367 5977 3773 333 350 0 17 chr11 87606801 87606918 -61176554 + MIR SINE MIR 10 124 -138 3302 116 29 68 chr11 87606946 87607565 -61175907 + L1PB4 LINE L1 5550 6144 -12 21 0 0 0 chr11 87607749 87607770 -61175702 + AT_rich Low_complexity Low_complexity 1 21 0 440 221 0 19 chr11 87608050 87608156 -61175316 + MIR SINE MIR 104 206 -56 200 185 0 56 chr11 87608659 87608713 -61174759 + CT-rich Low_complexity Low_complexity 2 52 0 2342 100 0 3 chr11 87608999 87609308 -61174164 + AluSg SINE Alu 1 308 -2 235 250 272 0 chr11 87609394 87609486 -61173986 - MIR SINE MIR -98 164 48 238 298 43 11 chr11 87610399 87610493 -61172979 - MIR SINE MIR -70 192 96 409 350 8 0 chr11 87611514 87611631 -61171841 - L2 LINE L2 -5 3267 3150 294 213 67 0 chr11 87611741 87611816 -61171656 + L2 LINE L2 3150 3229 -43 1112 191 5 0 chr11 87611972 87612166 -61171306 + AluJo SINE Alu 1 195 -117 218 404 51 13 chr11 87613405 87613561 -61169911 + MIR SINE MIR 31 192 -70 2147 142 0 0 chr11 87614467 87614778 -61168694 - AluSx SINE Alu -1 311 1 278 121 0 17 chr11 87615111 87615169 -61168303 + (CA)n Simple_repeat Simple_repeat 1 57 0 281 200 44 44 chr11 87615379 87615469 -61168003 - MER112 DNA MER1_type -38 222 133 366 23 0 0 chr11 87615498 87615541 -61167931 + (TG)n Simple_repeat Simple_repeat 2 44 0 1947 129 11 0 chr11 87615594 87615922 -61167550 + AluJo SINE Alu 1 331 0 484 244 47 8 chr11 87616042 87616169 -61167303 + FLAM_A SINE Alu 1 132 -1 23 0 0 0 chr11 87616356 87616379 -61167093 + AT_rich Low_complexity Low_complexity 1 23 0 3641 271 129 30 chr11 87616863 87618323 -61165149 + L2 LINE L2 18 1621 -1693 857 210 15 70 chr11 87618328 87618600 -61164872 - L1M4 LINE L1 -611 5573 5317 241 95 0 0 chr11 87618742 87618784 -61164688 - L1MB3 LINE L1 0 6183 6142 328 275 50 38 chr11 87620053 87620213 -61163259 + MIR SINE MIR 95 256 -6 9461 224 19 49 chr11 87620560 87621926 -61161546 - L1PA15-16 LINE L1 -1617 5232 3826 1552 196 6 37 chr11 87621926 87622248 -61161224 - AluJb SINE Alu 0 312 1 9461 224 19 49 chr11 87622248 87624252 -61159220 - L1PA15-16 LINE L1 -3023 3826 2042 303 85 0 0 chr11 87624252 87624299 -61159173 + (TG)n Simple_repeat Simple_repeat 2 48 0 9461 224 19 49 chr11 87624299 87625363 -61158109 - L1PA15-16 LINE L1 -4807 2042 947 1084 224 53 60 chr11 87625576 87625822 -61157650 + L1MC5 LINE L1 7335 7581 -380 2257 105 3 10 chr11 87625822 87626128 -61157344 + AluSq SINE Alu 1 304 -9 1084 224 53 60 chr11 87626128 87626461 -61157011 + L1MC5 LINE L1 7581 7910 -51 630 250 25 21 chr11 87626463 87626699 -61156773 + L1ME3 LINE L1 4944 5180 -966 971 254 41 15 chr11 87626707 87627046 -61156426 + L1ME3 LINE L1 5427 5774 -390 548 164 9 0 chr11 87629035 87629145 -61154327 + GA-rich Low_complexity Low_complexity 2 112 0 1285 232 40 21 chr11 87629146 87629525 -61153947 + L1ME3 LINE L1 5757 6142 -20 691 182 153 18 chr11 87630088 87630258 -61153214 + MLT1A1 LTR MaLR 173 365 0 2112 209 99 4 chr11 87630343 87630878 -61152594 + L1MC4 LINE L1 6460 7045 -997 2032 223 99 5 chr11 87630880 87631507 -61151965 + L1MC4 LINE L1 7227 7912 -130 492 129 0 0 chr11 87631556 87631626 -61151846 + AluJ/FRAM SINE Alu 221 290 -22 312 177 0 38 chr11 87631805 87631884 -61151588 - MER105 DNA DNA -72 132 57 184 322 23 11 chr11 87632039 87632126 -61151346 - L2 LINE L2 -833 2481 2394 250 185 102 111 chr11 87632342 87632450 -61151022 + L2 LINE L2 3162 3268 -4 238 277 54 71 chr11 87632464 87632553 -61150919 - L2 LINE L2 -561 2753 2665 1295 153 19 5 chr11 87632553 87632768 -61150704 - MER20 DNA MER1_type -1 218 1 238 277 54 71 chr11 87632768 87632790 -61150682 - L2 LINE L2 -649 2665 2644 451 337 58 74 chr11 87633981 87634239 -61149233 + L2 LINE L2 2926 3179 -93 214 319 118 8 chr11 87634604 87634723 -61148749 + MIR3 SINE MIR 76 207 -1 25 65 0 0 chr11 87634795 87634841 -61148631 + AT_rich Low_complexity Low_complexity 1 46 0 238 339 128 14 chr11 87634870 87635088 -61148384 + L2 LINE L2 2814 3056 -216 634 301 28 24 chr11 87635105 87635354 -61148118 + MIR SINE MIR 13 262 0 183 340 93 21 chr11 87635412 87635509 -61147963 + L2 LINE L2 3133 3236 -36 240 319 86 9 chr11 87635652 87635768 -61147704 - MIR SINE MIR -74 188 64 1826 89 20 8 chr11 87635984 87636230 -61147242 - AluSq SINE Alu -3 310 62 331 195 129 112 chr11 87637058 87637231 -61146241 + MIR SINE MIR 15 192 -63 244 328 64 90 chr11 87637446 87637757 -61145715 + L2 LINE L2 2968 3270 -2 186 286 0 0 chr11 87637767 87637809 -61145663 + L3 LINE CR1 1183 1224 -353 190 354 0 12 chr11 87637922 87638004 -61145468 + L3b LINE CR1 1286 1366 -217 1002 202 14 5 chr11 87638009 87638217 -61145255 - MER20 DNA MER1_type -9 210 1 527 80 0 45 chr11 87638560 87638648 -61144824 - L1PA8 LINE L1 0 6172 6089 272 181 72 24 chr11 87639647 87639730 -61143742 - MER103 DNA DNA -58 108 22 351 0 0 0 chr11 87639920 87639959 -61143513 + (TG)n Simple_repeat Simple_repeat 2 40 0 2209 92 0 7 chr11 87639959 87640243 -61143229 - AluSc SINE Alu -27 282 1 3221 152 22 21 chr11 87640339 87640918 -61142554 + LTR22 LTR ERVK 1 580 0 1680 176 14 21 chr11 87641217 87641507 -61141965 - AluJb SINE Alu -24 288 1 297 241 52 69 chr11 87641817 87641933 -61141539 - L2 LINE L2 0 3313 3200 251 288 178 0 chr11 87642007 87642080 -61141392 - L2 LINE L2 -41 3272 3187 496 321 157 34 chr11 87642574 87643065 -61140407 + L2 LINE L2 2507 3062 -251 198 403 7 43 chr11 87643218 87643357 -61140115 + L2 LINE L2 3119 3252 -20 1085 68 0 0 chr11 87643371 87643503 -61139969 + AluY SINE Alu 1 132 -179 180 0 0 0 chr11 87643503 87643523 -61139949 + (A)n Simple_repeat Simple_repeat 1 20 0 207 0 0 0 chr11 87643627 87643650 -61139822 + (A)n Simple_repeat Simple_repeat 1 23 0 412 224 35 0 chr11 87643917 87644002 -61139470 - L2 LINE L2 -12 3301 3214 220 302 217 16 chr11 87644025 87644154 -61139318 - MIR SINE MIR -79 183 29 6666 67 3 0 chr11 87644301 87645366 -61138106 - L1PA7 LINE L1 0 6154 5070 543 269 66 121 chr11 87645667 87645924 -61137548 - L2 LINE L2 -1 3271 3029 1438 80 45 0 chr11 87645973 87646172 -61137300 + L1P3 LINE L1 5444 5651 -503 556 266 46 17 chr11 87646236 87646409 -61137063 - MIR SINE MIR -6 256 79 316 242 40 61 chr11 87646397 87646496 -61136976 - L3 LINE CR1 -152 1425 1329 * 1857 183 3 0 chr11 87646992 87647293 -61136179 - AluJb SINE Alu -10 302 1 504 281 50 62 chr11 87648233 87648475 -61134997 + MIR SINE MIR 1 239 -23 24 0 0 0 chr11 87648586 87648610 -61134862 + AT_rich Low_complexity Low_complexity 1 24 0 490 307 8 0 chr11 87649047 87649174 -61134298 - MIR SINE MIR -130 132 5 344 238 0 24 chr11 87649256 87649340 -61134132 - MIR SINE MIR -56 206 125 257 306 10 41 chr11 87649441 87649539 -61133933 + L2 LINE L2 3218 3312 -1 231 277 225 80 chr11 87650104 87650490 -61132982 + L2 LINE L2 2827 3268 -4 255 261 109 0 chr11 87650669 87650761 -61132711 + L1ME1 LINE L1 5979 6080 -86 393 258 55 106 chr11 87650864 87651081 -61132391 + L1MC4 LINE L1 7836 8041 -1 406 268 84 39 chr11 87651179 87651358 -61132114 - MIR SINE MIR -72 190 4 251 275 25 0 chr11 87651927 87652007 -61131465 + MER103 DNA DNA 69 150 -16 385 304 94 29 chr11 87652790 87652961 -61130511 + L3 LINE CR1 989 1170 -407 560 313 40 0 chr11 87652979 87653180 -61130292 - L1ME LINE L1 -377 5744 5536 1801 167 14 7 chr11 87653473 87653767 -61129705 + AluJo SINE Alu 2 297 -15 287 206 0 0 chr11 87653839 87653902 -61129570 - MER116 DNA Mariner 0 80 18 210 211 56 28 chr11 87654232 87654303 -61129169 - MIR SINE MIR -79 183 111 334 241 12 0 chr11 87654345 87654428 -61129044 + U13 snRNA snRNA 19 102 -2 687 190 7 21 chr11 87654598 87654740 -61128732 - MIR SINE MIR -77 185 46 964 150 0 13 chr11 87654744 87654897 -61128575 + FRAM SINE Alu 24 174 -2 2348 69 14 0 chr11 87654899 87655187 -61128285 + AluSx SINE Alu 1 292 -20 717 171 120 19 chr11 87655696 87655854 -61127618 + MER5A DNA MER1_type 2 175 -14 212 350 38 0 chr11 87656155 87656235 -61127237 + MIR SINE MIR 60 142 -120 25 0 0 0 chr11 87657516 87657541 -61125931 + AT_rich Low_complexity Low_complexity 1 25 0 315 290 178 0 chr11 87658926 87659027 -61124445 + MIR SINE MIR 36 151 -62 731 159 9 0 chr11 87659028 87659141 -61124331 + AluJb SINE Alu 2 115 -197 315 191 0 0 chr11 87659145 87659208 -61124264 + GA-rich Low_complexity Low_complexity 3 65 0 4082 174 38 13 chr11 87659489 87660360 -61123112 - L1MB8 LINE L1 0 6178 5286 218 315 34 56 chr11 87660400 87660489 -61122983 + MIR SINE MIR 20 106 -156 3502 210 31 11 chr11 87660682 87661572 -61121900 - L1MB8 LINE L1 -871 5275 4368 444 292 73 6 chr11 87661620 87661777 -61121695 - MIR SINE MIR -67 141 25 208 277 13 44 chr11 87661854 87661929 -61121543 + MIR3 SINE MIR 12 82 -133 2581 251 62 43 chr11 87662222 87663312 -61120160 + L2 LINE L2 2196 3308 -5 328 241 28 110 chr11 87663542 87663687 -61119785 + MIR SINE MIR 74 206 -56 1971 117 3 31 chr11 87663885 87664199 -61119273 + AluSx SINE Alu 1 306 0 480 176 232 0 chr11 87665114 87665256 -61118216 + MER46B DNA MER2_type 3 52 -184 2081 112 42 0 chr11 87665256 87665543 -61117929 + AluSq SINE Alu 1 299 -14 1025 81 0 7 chr11 87665544 87665680 -61117792 + L1PA10 LINE L1 6031 6165 -3 2352 95 0 3 chr11 87666373 87666679 -61116793 + AluY SINE Alu 1 305 -6 1857 183 3 0 chr11 87667009 87667310 -61116162 - AluJb SINE Alu -10 302 1 504 281 50 62 chr11 87668250 87668492 -61114980 + MIR SINE MIR 1 239 -23 24 0 0 0 chr11 87668603 87668627 -61114845 + AT_rich Low_complexity Low_complexity 1 24 0 490 307 8 0 chr11 87669064 87669191 -61114281 - MIR SINE MIR -130 132 5 344 238 0 24 chr11 87669273 87669357 -61114115 - MIR SINE MIR -56 206 125 257 306 10 41 chr11 87669458 87669556 -61113916 + L2 LINE L2 3218 3312 -1 231 277 225 80 chr11 87670121 87670507 -61112965 + L2 LINE L2 2827 3268 -4 255 261 109 0 chr11 87670686 87670778 -61112694 + L1ME1 LINE L1 5979 6080 -86 393 258 55 106 chr11 87670881 87671098 -61112374 + L1MC4 LINE L1 7836 8041 -1 406 268 84 39 chr11 87671196 87671375 -61112097 - MIR SINE MIR -72 190 4 251 275 25 0 chr11 87671944 87672024 -61111448 + MER103 DNA DNA 69 150 -16 385 304 94 29 chr11 87672807 87672978 -61110494 + L3 LINE CR1 989 1170 -407 560 313 40 0 chr11 87672996 87673197 -61110275 - L1ME LINE L1 -377 5744 5536 1801 167 14 7 chr11 87673490 87673784 -61109688 + AluJo SINE Alu 2 297 -15 287 206 0 0 chr11 87673856 87673919 -61109553 - MER116 DNA Mariner 0 80 18 210 211 56 28 chr11 87674249 87674320 -61109152 - MIR SINE MIR -79 183 111 282 195 73 49 chr11 87674362 87674444 -61109028 + U13 snRNA snRNA 19 102 -2 694 191 20 20 chr11 87674614 87674761 -61108711 - MIR SINE MIR -77 185 39 * 964 150 0 13 chr11 87674760 87674913 -61108559 + FRAM SINE Alu 24 174 -2 2203 83 16 16 chr11 87674915 87675227 -61108245 + AluSx SINE Alu 1 312 0 1033 204 46 14 chr11 87677381 87677597 -61105875 + MER58A DNA MER1_type 2 224 0 1731 169 47 3 chr11 87678062 87678358 -61105114 - AluJo SINE Alu -3 309 1 487 298 53 44 chr11 87678805 87679033 -61104439 - MIR SINE MIR -31 231 2 221 284 11 68 chr11 87679170 87679258 -61104214 + MIR SINE MIR 180 262 0 * 534 256 79 30 chr11 87679250 87679414 -61104058 - MIR SINE MIR -63 199 28 181 219 0 0 chr11 87679833 87679865 -61103607 - L2 LINE L2 -84 3229 3198 1004 247 40 48 chr11 87679923 87680296 -61103176 + L1ME3A LINE L1 5796 6165 -5 28 0 0 0 chr11 87680574 87680602 -61102870 + AT_rich Low_complexity Low_complexity 1 28 0 1404 221 91 20 chr11 87681660 87682166 -61101306 + MLT1F LTR MaLR 9 542 0 329 214 17 34 chr11 87682983 87683100 -61100372 - MER113 DNA MER1_type? -401 120 6 22 35 0 0 chr11 87683222 87683251 -61100221 + AT_rich Low_complexity Low_complexity 1 29 0 7829 177 12 32 chr11 87684048 87685801 -61097671 + L1PA16 LINE L1 3558 5274 -892 2400 66 3 3 chr11 87685801 87686106 -61097366 + AluY SINE Alu 1 305 -6 7829 177 12 32 chr11 87686106 87686488 -61096984 + L1PA16 LINE L1 5274 5662 -504 911 127 22 8 chr11 87686488 87686622 -61096850 + AluJb SINE Alu 1 136 -176 3017 140 0 26 chr11 87686641 87687169 -61096303 + L1PA16 LINE L1 5652 6165 -1 2350 45 45 0 chr11 87687231 87687518 -61095954 + AluY SINE Alu 1 300 -11 1081 213 31 4 chr11 87687690 87687915 -61095557 - MIR SINE MIR -1 261 31 377 230 44 52 chr11 87687966 87688101 -61095371 - MER117 DNA MER1_type -62 135 2 672 260 79 0 chr11 87688657 87688834 -61094638 - MIR SINE MIR -70 192 2 315 284 69 10 chr11 87689465 87689567 -61093905 - L2 LINE L2 -9 3263 3156 226 254 221 8 chr11 87689873 87689995 -61093477 - L2 LINE L2 0 3313 3166 191 35 0 35 chr11 87690065 87690094 -61093378 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 333 202 0 43 chr11 87690225 87690319 -61093153 - L1M LINE L1 -791 5379 5290 1000 131 33 11 chr11 87690915 87691098 -61092374 - L1MA8 LINE L1 -5 6286 6100 593 302 35 24 chr11 87691187 87691442 -61092030 + L1MC4 LINE L1 6717 6974 -1068 571 285 65 64 chr11 87691606 87692297 -61091175 + L1MC4 LINE L1 6999 7672 -370 1220 157 12 60 chr11 87692372 87692620 -61090852 + MER46A DNA MER2_type 1 236 0 290 301 54 0 chr11 87693285 87693378 -61090094 - L2 LINE L2 -2 3270 3173 914 176 50 11 chr11 87693498 87693680 -61089792 + MER5A DNA MER1_type 1 189 0 599 312 102 0 chr11 87694345 87694560 -61088912 + MIR SINE MIR 20 256 -6 303 319 104 0 chr11 87694914 87695062 -61088410 - MIR3 SINE MIR -8 200 37 21 36 0 0 chr11 87695183 87695211 -61088261 + AT_rich Low_complexity Low_complexity 1 28 0 359 351 48 0 chr11 87695470 87695635 -61087837 - MIR SINE MIR -20 242 70 2449 73 0 7 chr11 87697183 87697485 -61085987 - AluSx SINE Alu -12 300 1 894 149 12 18 chr11 87698182 87698350 -61085122 - FRAM SINE Alu -10 166 1 191 245 61 0 chr11 87698371 87698420 -61085052 - L3 LINE CR1 -7 1570 1519 239 300 30 0 chr11 87698541 87698641 -61084831 + L1ME3A LINE L1 5950 6052 -118 368 319 138 81 chr11 87698797 87699117 -61084355 - L2 LINE L2 -1 3271 2934 1916 155 3 7 chr11 87699223 87699527 -61083945 + AluSx SINE Alu 8 310 -2 2180 151 0 0 chr11 87699537 87699849 -61083623 + AluJo SINE Alu 1 312 0 390 200 8 24 chr11 87699849 87699974 -61083498 + GA-rich Low_complexity Low_complexity 2 124 0 446 270 16 8 chr11 87700026 87700152 -61083320 + L2 LINE L2 3187 3313 0 482 225 9 114 chr11 87701633 87701975 -61081497 - AluY SINE Alu -3 308 3 394 289 137 24 chr11 87702172 87702383 -61081089 - L3 LINE CR1 -289 1288 1054 1790 119 77 19 chr11 87702440 87702750 -61080722 + MER44D DNA MER2_type 12 609 0 1701 165 44 117 chr11 87702801 87703299 -61080173 + MLT1C LTR MaLR 6 467 0 263 295 237 6 chr11 87703299 87703472 -61080000 - L2 LINE L2 -224 3048 2836 22 0 0 0 chr11 87703562 87703584 -61079888 + AT_rich Low_complexity Low_complexity 1 22 0 420 314 71 71 chr11 87704731 87704906 -61078566 - L2 LINE L2 -15 3298 3121 2075 142 0 3 chr11 87704906 87705215 -61078257 + AluJo SINE Alu 3 310 -2 420 314 71 71 chr11 87705215 87705319 -61078153 - L2 LINE L2 -191 3122 3019 262 326 155 16 chr11 87706056 87706185 -61077287 - L2 LINE L2 -1 3271 3125 259 333 85 63 chr11 87706331 87706601 -61076871 + L2 LINE L2 2813 3088 -184 297 261 293 5 chr11 87706662 87706850 -61076622 + MIR SINE MIR 8 249 -13 2732 74 6 0 chr11 87706953 87707306 -61076166 + THE1A LTR MaLR 1 355 0 12127 82 5 0 chr11 87707306 87708876 -61074596 + THE1A-int LTR MaLR 1 1578 -2 1472 60 25 0 chr11 87708878 87709077 -61074395 + THE1A LTR MaLR 1 204 -151 13857 105 20 7 chr11 87709077 87711159 -61072313 - L1P LINE L1 -4035 2111 2 258 209 15 0 chr11 87711602 87711669 -61071803 - MER112 DNA MER1_type 0 260 193 2298 104 48 41 chr11 87712297 87712710 -61070762 - Tigger2 DNA MER2_type 0 2718 2303 419 116 14 0 chr11 87712710 87712779 -61070693 - Tigger2 DNA MER2_type -2648 70 1 1255 85 0 120 chr11 87712991 87713332 -61070140 - AluYa5 SINE Alu -1 300 1 189 0 0 0 chr11 87713392 87713413 -61070059 + (CA)n Simple_repeat Simple_repeat 2 22 0 301 300 11 126 chr11 87713655 87713932 -61069540 - L2 LINE L2 -92 3180 2936 24 32 0 0 chr11 87714000 87714031 -61069441 + AT_rich Low_complexity Low_complexity 1 31 0 1679 160 31 3 chr11 87714815 87715103 -61068369 + AluJb SINE Alu 2 297 -15 334 309 101 23 chr11 87715228 87715445 -61068027 + MIR SINE MIR 12 245 -17 1862 138 10 17 chr11 87716819 87717109 -61066363 - AluJo SINE Alu -12 300 13 359 256 135 23 chr11 87717196 87717329 -61066143 + MIR SINE MIR 25 172 -90 184 243 0 0 chr11 87717487 87717524 -61065948 + MIR SINE MIR 138 174 -88 688 325 76 31 chr11 87717565 87717947 -61065525 + L2 LINE L2 2874 3272 0 264 130 0 22 chr11 87718018 87718064 -61065408 + MER39 LTR ERV1 1 45 -662 3183 147 99 11 chr11 87718092 87718719 -61064753 + MER39 LTR ERV1 26 707 0 1716 146 29 54 chr11 87719610 87719925 -61063547 + AluJo SINE Alu 1 307 -5 317 177 21 21 chr11 87719925 87720021 -61063451 + GA-rich Low_complexity Low_complexity 4 99 0 252 164 0 0 chr11 87720045 87720112 -61063360 + (CAG)n Simple_repeat Simple_repeat 3 69 0 4822 243 145 27 chr11 87720532 87722264 -61061208 + L2 LINE L2 1041 2976 -338 216 160 13 160 chr11 87722259 87722334 -61061138 + L2 LINE L2 3246 3309 -4 * 284 291 24 0 chr11 87722356 87722483 -61060989 - L1ME4a LINE L1 -224 5897 5768 196 264 0 19 chr11 87722585 87722638 -61060834 + MIR SINE MIR 147 198 -64 23 0 0 0 chr11 87722820 87722843 -61060629 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr11 87722957 87722980 -61060492 + AT_rich Low_complexity Low_complexity 1 23 0 355 320 66 48 chr11 87723581 87723915 -61059557 + MLT1I LTR MaLR 70 409 0 1821 187 0 3 chr11 87724046 87724346 -61059126 + AluJo SINE Alu 2 300 -12 382 315 46 15 chr11 87724350 87724480 -61058992 + MIR SINE MIR 122 255 -7 23 0 0 0 chr11 87724776 87724799 -61058673 + AT_rich Low_complexity Low_complexity 1 23 0 184 242 65 32 chr11 87724963 87725025 -61058447 + L2 LINE L2 3189 3252 -20 447 311 8 0 chr11 87725041 87725160 -61058312 - MIR3 SINE MIR -39 169 50 471 296 127 27 chr11 87725635 87725855 -61057617 - MIR SINE MIR 0 262 21 773 144 56 0 chr11 87725873 87725998 -61057474 - FLAM_C SINE Alu -10 133 2 200 189 54 0 chr11 87726089 87726126 -61057346 + MIR3 SINE MIR 142 180 -28 * 201 191 48 0 chr11 87726098 87726140 -61057332 + L3 LINE CR1 1526 1569 -8 1344 170 31 92 chr11 87726751 87726957 -61056515 + MLT2D LTR ERVL 1 173 -241 2039 107 0 11 chr11 87726957 87727237 -61056235 + AluSx SINE Alu 29 305 -7 1344 170 31 92 chr11 87727237 87727419 -61056053 + MLT2D LTR ERVL 173 365 -49 211 100 0 60 chr11 87727807 87727857 -61055615 + (TAAAAA)n Simple_repeat Simple_repeat 2 48 0 21 0 0 0 chr11 87728775 87728796 -61054676 + AT_rich Low_complexity Low_complexity 1 21 0 752 172 0 22 chr11 87729421 87729555 -61053917 + AluJo SINE Alu 5 135 -177 739 161 17 0 chr11 87729631 87729749 -61053723 + FLAM_C SINE Alu 1 120 -23 303 267 176 38 chr11 87729781 87729991 -61053481 - MIR SINE MIR -4 258 20 478 279 39 52 chr11 87731439 87731672 -61051800 - MIR SINE MIR -13 249 20 298 344 92 53 chr11 87732854 87733267 -61050205 + L2 LINE L2 2535 2963 -351 304 276 98 41 chr11 87733353 87733476 -61049996 - L2 LINE L2 0 3313 3184 632 300 36 60 chr11 87733516 87733991 -61049481 - L2 LINE L2 -218 3054 2402 842 169 121 6 chr11 87735134 87735300 -61048172 + MER5A DNA MER1_type 4 188 -1 239 180 236 0 chr11 87735976 87736065 -61047407 - L1ME4a LINE L1 -2 6119 6010 377 264 124 47 chr11 87736236 87736365 -61047107 + L2 LINE L2 3134 3272 0 186 71 0 0 chr11 87736653 87736681 -61046791 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 1702 168 21 3 chr11 87738110 87738396 -61045076 - AluJo SINE Alu -21 291 1 1180 321 53 23 chr11 87738397 87738958 -61044514 - L2 LINE L2 -7 3306 2720 2196 176 29 43 chr11 87739095 87739550 -61043922 + LTR54 LTR ERV1 1 450 -60 3779 93 35 4 chr11 87739550 87740087 -61043385 - MER41A LTR ERV1 0 554 1 2196 176 29 43 chr11 87740087 87740148 -61043324 + LTR54 LTR ERV1 450 510 0 2067 120 38 3 chr11 87740835 87741126 -61042346 - AluSx SINE Alu -11 301 1 24 0 0 0 chr11 87741164 87741188 -61042284 + AT_rich Low_complexity Low_complexity 1 24 0 1190 193 0 5 chr11 87741188 87741395 -61042077 - AluJb SINE Alu -21 291 86 15011 108 35 17 chr11 87741434 87743809 -61039663 - Tigger1 DNA MER2_type 0 2418 1 1600 180 65 4 chr11 87743833 87744111 -61039361 - AluJo SINE Alu -17 295 1 1303 149 152 29 chr11 87744330 87744504 -61038968 - MER46B DNA MER2_type -2499 232 125 2228 104 7 0 chr11 87744504 87744801 -61038671 - AluSq SINE Alu -14 299 1 1303 149 152 29 chr11 87744801 87744942 -61038530 - MER46B DNA MER2_type -2606 125 3 197 355 66 0 chr11 87745789 87745865 -61037607 + L2 LINE L2 3199 3279 -34 384 323 89 0 chr11 87746184 87746308 -61037164 + L2 LINE L2 3138 3272 0 878 187 126 0 chr11 87746443 87746625 -61036847 - MER6B DNA MER2_type -5 205 1 522 291 63 5 chr11 87746672 87746861 -61036611 + MIR SINE MIR 63 262 0 892 252 91 4 chr11 87746896 87747126 -61036346 + MIR SINE MIR 2 251 -11 663 302 41 37 chr11 87747243 87747488 -61035984 - MIR SINE MIR -10 252 7 12363 184 44 24 chr11 87747721 87750338 -61033134 - L1PB1 LINE L1 -3 6864 4300 2156 92 27 0 chr11 87750338 87750632 -61032840 - AluY SINE Alu -9 302 1 12363 184 44 24 chr11 87750632 87752177 -61031295 - L1PB1 LINE L1 -2567 4300 2565 2464 80 3 3 chr11 87752177 87752488 -61030984 - AluSq SINE Alu -2 311 1 12363 184 44 24 chr11 87752488 87753682 -61029790 - L1PB1 LINE L1 -4302 2565 1396 718 219 27 0 chr11 87753682 87753869 -61029603 - L1PB1 LINE L1 -6666 197 6 1912 166 3 10 chr11 87755142 87755456 -61028016 + AluJb SINE Alu 1 312 0 1676 147 48 11 chr11 87755528 87755882 -61027590 + Charlie1b DNA MER1_type 45 411 -112 1775 195 0 3 chr11 87755924 87756227 -61027245 + AluJo SINE Alu 1 302 -10 2307 85 7 0 chr11 87756316 87756610 -61026862 + AluY SINE Alu 1 296 -15 380 182 0 0 chr11 87756612 87756689 -61026783 + L1MA9 LINE L1 6202 6278 -34 1918 160 3 7 chr11 87756698 87756998 -61026474 - AluJb SINE Alu -13 299 1 430 147 21 21 chr11 87757024 87757119 -61026353 + Charlie1b DNA MER1_type 428 522 -1 656 253 142 0 chr11 87757204 87757366 -61026106 + MER5A DNA MER1_type 4 188 -1 2375 99 0 3 chr11 87758800 87759112 -61024360 - AluY SINE Alu 0 311 1 2471 60 0 3 chr11 87760035 87760333 -61023139 + AluY SINE Alu 1 297 -14 28 0 0 0 chr11 87761108 87761136 -61022336 + AT_rich Low_complexity Low_complexity 1 28 0 194 246 16 0 chr11 87761561 87761622 -61021850 + CT-rich Low_complexity Low_complexity 2 63 0 312 286 180 28 chr11 87761643 87761821 -61021651 - MIR SINE MIR -1 261 57 1920 140 3 26 chr11 87761964 87762272 -61021200 - AluJb SINE Alu -11 301 1 245 336 97 18 chr11 87765592 87765705 -61017767 - L2 LINE L2 -5 3308 3187 2137 119 0 7 chr11 87766218 87766513 -61016959 + AluSx SINE Alu 1 293 -19 521 249 110 37 chr11 87766621 87767247 -61016225 - L1MC4 LINE L1 -124 7918 7262 1555 137 125 0 chr11 87767351 87767599 -61015873 + AluJb SINE Alu 11 289 -23 1899 164 7 13 chr11 87769011 87769321 -61014151 - AluJb SINE Alu -4 308 1 709 201 0 8 chr11 87769324 87769458 -61014014 - AluJo/FLAM SINE Alu -179 133 1 7373 202 56 25 chr11 87769475 87769819 -61013653 + L1M2 LINE L1 2183 2515 -3631 1282 165 3 153 chr11 87769819 87770158 -61013314 + AluJo SINE Alu 1 288 -24 7373 202 56 25 chr11 87770158 87770520 -61012952 + L1M2 LINE L1 2515 2864 -3282 2322 102 0 0 chr11 87770520 87770813 -61012659 + AluSg SINE Alu 1 293 -17 7373 202 56 25 chr11 87770813 87771138 -61012334 + L1M2 LINE L1 2864 3177 -2969 2251 125 97 5 chr11 87771138 87771529 -61011943 - MSTA LTR MaLR -1 427 1 7373 202 56 25 chr11 87771529 87772969 -61010503 + L1M2 LINE L1 3177 4777 -1369 4689 177 24 22 chr11 87772970 87773774 -61009698 - MER52A LTR ERV1 -2 1753 952 1821 117 126 36 chr11 87773774 87774108 -61009364 - THE1B LTR MaLR 0 364 1 11610 92 9 4 chr11 87774108 87775679 -61007793 - THE1B-int LTR MaLR 0 1580 1 2253 147 33 25 chr11 87775679 87776040 -61007432 - THE1B LTR MaLR 0 364 1 4689 177 24 22 chr11 87776040 87776922 -61006550 - MER52A LTR ERV1 -802 953 134 2730 165 113 12 chr11 87776922 87777729 -61005743 + L1M2 LINE L1 4794 5664 -633 1018 274 133 32 chr11 87778402 87778778 -61004694 - MLT1J2 LTR MaLR -36 414 1 520 121 0 0 chr11 87778799 87778865 -61004607 - AluSg/x SINE Alu -30 280 215 512 224 11 62 chr11 87778903 87779082 -61004390 - MER104 DNA Tc2 -4 176 7 1704 178 24 17 chr11 87779470 87779762 -61003710 - AluJb SINE Alu -18 294 1 1366 141 5 23 chr11 87780036 87780256 -61003216 + AluJo SINE Alu 85 300 -12 1134 131 17 11 chr11 87780363 87780539 -61002933 - AluSx SINE Alu -135 177 1 829 125 70 0 chr11 87780540 87780668 -61002804 - AluSc SINE Alu -19 290 154 10010 157 54 6 chr11 87780675 87782501 -61000971 - L1P LINE L1 -1479 4667 2753 1773 164 74 0 chr11 87782498 87782797 -61000675 - L1PA13 LINE L1 -6466 321 1 * 2298 166 27 5 chr11 87783162 87783848 -60999624 - L1P5 LINE L1 -620 5531 4826 2007 122 3 14 chr11 87783860 87784173 -60999299 - AluSx SINE Alu 0 312 1 725 249 38 39 chr11 87784639 87784782 -60998690 + MIR SINE MIR 19 161 -101 7511 164 67 118 chr11 87784782 87786631 -60996841 + MER52A LTR ERV1 1 1755 0 725 249 38 39 chr11 87786631 87786727 -60996745 + MIR SINE MIR 161 256 -6 1630 176 7 7 chr11 87787028 87787307 -60996165 - AluJb SINE Alu -33 279 1 235 290 0 0 chr11 87787310 87787372 -60996100 - MER5A DNA MER1_type -40 149 88 24 0 0 0 chr11 87787470 87787494 -60995978 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr11 87787583 87787604 -60995868 + AT_rich Low_complexity Low_complexity 1 21 0 295 258 163 28 chr11 87787626 87787804 -60995668 + L1MC4 LINE L1 7710 7911 -131 236 173 0 19 chr11 87787808 87787860 -60995612 - LTR66 LTR ERVL -171 439 389 237 262 87 19 chr11 87787865 87787968 -60995504 + L1MC5 LINE L1 7808 7917 -44 201 293 181 8 chr11 87788947 87789080 -60994392 + MIR SINE MIR 101 256 -6 289 219 16 0 chr11 87789609 87789673 -60993799 - MER103 DNA DNA -12 154 90 344 244 24 0 chr11 87789777 87789859 -60993613 - MER103 DNA DNA -72 94 11 281 217 0 54 chr11 87790696 87790753 -60992719 + (CATATA)n Simple_repeat Simple_repeat 2 54 -34 1767 178 0 7 chr11 87790753 87791045 -60992427 + AluJo SINE Alu 1 290 -22 281 217 0 54 chr11 87791045 87791079 -60992393 + (CATATA)n Simple_repeat Simple_repeat 54 88 0 2631 158 36 5 chr11 87791119 87791530 -60991942 + MSTB LTR MaLR 1 424 -2 774 269 148 21 chr11 87791579 87791917 -60991555 + HAL1 LINE L1 13 393 -2114 442 254 41 24 chr11 87791965 87792135 -60991337 + L1MC5 LINE L1 7688 7772 -13 521 302 76 9 chr11 87792223 87792448 -60991024 + HAL1 LINE L1 573 812 -1695 260 85 203 0 chr11 87792442 87792501 -60990971 - L1MB7 LINE L1 0 6184 6114 * 1620 141 15 11 chr11 87792527 87792797 -60990675 - L1MB8 LINE L1 -53 6125 5855 2629 212 108 34 chr11 87792802 87793636 -60989836 + HAL1 LINE L1 803 1698 -809 1371 179 56 0 chr11 87793636 87793887 -60989585 + AluJo SINE Alu 36 300 -12 856 153 7 27 chr11 87794220 87794392 -60989080 - AluJb SINE Alu 0 312 157 307 228 73 29 chr11 87794421 87794557 -60988915 - L1MC5 LINE L1 -184 7777 7636 3157 116 21 11 chr11 87794575 87795041 -60988431 + L1PB2 LINE L1 5681 6151 0 1764 183 0 3 chr11 87795062 87795351 -60988121 + AluJb SINE Alu 2 289 -23 1597 145 17 24 chr11 87795369 87795659 -60987813 + AluSx SINE Alu 9 296 -16 1880 155 5 84 chr11 87795677 87796091 -60987381 + MLT1B LTR MaLR 10 390 0 409 301 128 19 chr11 87796097 87796363 -60987109 - L1MC5 LINE L1 -394 7567 7273 2338 104 3 0 chr11 87796371 87796678 -60986794 - AluSp SINE Alu -5 308 1 751 227 0 0 chr11 87797346 87797478 -60985994 - FLAM_A SINE Alu 0 133 2 231 36 0 0 chr11 87797903 87797931 -60985541 + (T)n Simple_repeat Simple_repeat 1 28 0 2392 109 0 3 chr11 87798119 87798431 -60985041 - AluSx SINE Alu -1 311 1 303 255 71 41 chr11 87798435 87798533 -60984939 + L3 LINE CR1 688 788 -789 390 247 168 44 chr11 87798548 87798754 -60984718 - MIR3 SINE MIR 0 262 9 189 216 54 0 chr11 87799768 87799805 -60983667 - L2 LINE L2 -12 3301 3263 * 400 236 220 0 chr11 87799778 87799935 -60983537 - MIR SINE MIR -18 244 54 192 125 0 0 chr11 87799991 87800023 -60983449 + (GAAAA)n Simple_repeat Simple_repeat 3 34 0 666 287 70 9 chr11 87800060 87800290 -60983182 - MIR SINE MIR -12 250 7 550 302 66 6 chr11 87801046 87801228 -60982244 - MIR SINE MIR -17 245 53 2157 129 0 3 chr11 87801228 87801530 -60981942 - AluSx SINE Alu -11 301 1 759 302 159 13 chr11 87801582 87802201 -60981271 - L2 LINE L2 0 3272 2559 41 48 0 0 chr11 87802248 87802310 -60981162 + AT_rich Low_complexity Low_complexity 1 62 0 2159 116 0 3 chr11 87802320 87802613 -60980859 - AluSx SINE Alu -20 292 1 252 304 170 0 chr11 87802642 87802754 -60980718 - L2 LINE L2 -803 2511 2381 616 310 80 57 chr11 87802836 87803223 -60980249 + L3 LINE CR1 1180 1575 -2 411 291 108 13 chr11 87803406 87803564 -60979908 + MIR SINE MIR 16 188 -74 2334 112 0 0 chr11 87803602 87803915 -60979557 + AluSq SINE Alu 1 313 0 461 241 70 43 chr11 87803916 87804103 -60979369 - MIR SINE MIR 0 262 71 214 174 0 22 chr11 87804245 87804291 -60979181 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 1597 172 0 4 chr11 87804459 87804720 -60978752 + AluJb SINE Alu 1 260 -52 226 301 48 48 chr11 87805293 87805370 -60978102 - MARNA DNA Mariner -259 327 248 2176 105 3 13 chr11 87805370 87805674 -60977798 + AluSq SINE Alu 1 301 -12 226 301 48 48 chr11 87805674 87805742 -60977730 - MARNA DNA Mariner -337 249 182 2093 131 0 7 chr11 87805975 87806272 -60977200 + AluSx SINE Alu 1 295 -17 431 202 12 0 chr11 87806672 87806756 -60976716 + L1ME3A LINE L1 6025 6109 -61 26 82 0 0 chr11 87806756 87806817 -60976655 + AT_rich Low_complexity Low_complexity 1 61 0 2081 113 41 7 chr11 87806821 87807112 -60976360 + AluSx SINE Alu 1 301 -11 2115 115 13 13 chr11 87807334 87807639 -60975833 + AluSx SINE Alu 1 305 -7 1324 253 82 66 chr11 87807657 87808077 -60975395 + L1MC4 LINE L1 7315 7753 -289 1692 200 204 39 chr11 87808077 87808543 -60974929 + MLT1H LTR MaLR 4 546 -3 1324 253 82 66 chr11 87808543 87808838 -60974634 + L1MC4 LINE L1 7753 8042 0 873 214 28 16 chr11 87810311 87810493 -60972979 - AluJo SINE Alu -128 184 1 453 304 36 14 chr11 87810655 87810793 -60972679 + MIR SINE MIR 47 187 -75 487 283 7 14 chr11 87810909 87811047 -60972425 + MIR3 SINE MIR 71 207 -1 451 190 33 74 chr11 87811420 87811486 -60971986 + MIR3 SINE MIR 93 153 -55 731 179 144 41 chr11 87811486 87811553 -60971919 + MER58C DNA MER1_type 1 60 -2360 1744 172 0 10 chr11 87811553 87811855 -60971617 - AluJo SINE Alu -11 301 3 731 179 144 41 chr11 87811855 87811982 -60971490 + MER58C DNA MER1_type 60 215 0 451 190 33 74 chr11 87811982 87812036 -60971436 + MIR3 SINE MIR 153 208 0 782 179 49 0 chr11 87813028 87813151 -60970321 + FLAM_C SINE Alu 2 130 -13 1626 142 48 0 chr11 87813275 87813543 -60969929 + AluJb SINE Alu 17 297 -15 2293 93 0 3 chr11 87814189 87814480 -60968992 + AluSc SINE Alu 2 291 -18 634 13 63 0 chr11 87814993 87815072 -60968400 - L1PA5 LINE L1 -2 6152 6069 782 263 91 28 chr11 87815113 87815676 -60967796 - L1MEd LINE L1 -4707 1828 1075 1780 180 3 0 chr11 87815697 87815986 -60967486 + AluJb SINE Alu 1 290 -22 24 0 0 0 chr11 87816030 87816054 -60967418 + AT_rich Low_complexity Low_complexity 1 24 0 34528 93 10 59 chr11 87816216 87822686 -60960786 - L1PA6 LINE L1 0 6154 12 227 239 15 15 chr11 87822720 87822787 -60960685 - MIR SINE MIR -3 259 193 186 279 82 0 chr11 87822883 87822944 -60960528 - MIR SINE MIR -57 205 140 * 200 278 100 22 chr11 87822937 87823027 -60960445 + MIR SINE MIR 110 206 -56 1199 189 120 77 chr11 87824229 87824579 -60958893 + MLT1A1 LTR MaLR 1 365 0 459 309 64 10 chr11 87824580 87824784 -60958688 + L1MC5 LINE L1 5539 5753 -2055 23 78 0 0 chr11 87824866 87824917 -60958555 + AT_rich Low_complexity Low_complexity 1 51 0 730 202 31 0 chr11 87824932 87825061 -60958411 + FLAM_A SINE Alu 1 133 0 1257 193 0 32 chr11 87825067 87825316 -60958156 + AluJo SINE Alu 66 306 -6 1398 260 59 24 chr11 87825320 87825862 -60957610 + L1MC5 LINE L1 6926 7486 -475 296 272 99 62 chr11 87826227 87826412 -60957060 - MIR SINE MIR -49 213 7 216 222 0 0 chr11 87827467 87827503 -60955969 - L2 LINE L2 -18 3254 3219 985 193 0 18 chr11 87827517 87827533 -60955939 - AluSg/x SINE Alu -13 297 282 2845 60 0 14 chr11 87827533 87827886 -60955586 - L1PA13 LINE L1 -4 6159 5812 985 193 0 18 chr11 87827886 87828040 -60955432 - AluSg/x SINE Alu -28 282 130 29564 117 24 86 chr11 87828040 87829200 -60954272 - L1PA13 LINE L1 -334 5829 4599 2243 109 14 0 chr11 87829200 87829493 -60953979 - AluSx SINE Alu -15 297 1 837 124 70 0 chr11 87829493 87829622 -60953850 - AluSc SINE Alu -18 291 154 29564 117 24 86 chr11 87829622 87834550 -60948922 - L1PA13 LINE L1 -1562 4601 12 227 239 15 15 chr11 87834584 87834651 -60948821 - MIR SINE MIR -3 259 193 186 279 82 0 chr11 87834747 87834808 -60948664 - MIR SINE MIR -57 205 140 * 236 300 89 11 chr11 87834801 87834891 -60948581 + MIR SINE MIR 110 206 -56 1199 189 120 77 chr11 87836093 87836443 -60947029 + MLT1A1 LTR MaLR 1 365 0 459 309 64 10 chr11 87836444 87836648 -60946824 + L1MC5 LINE L1 5539 5753 -2055 23 78 0 0 chr11 87836730 87836781 -60946691 + AT_rich Low_complexity Low_complexity 1 51 0 754 194 31 0 chr11 87836796 87836925 -60946547 + FLAM_A SINE Alu 1 133 0 1257 193 0 32 chr11 87836930 87837179 -60946293 + AluJo SINE Alu 66 306 -6 1030 244 48 7 chr11 87837183 87837478 -60945994 + L1MC5 LINE L1 6926 7232 -729 238 184 39 56 chr11 87837602 87837781 -60945691 + (CACAA)n Simple_repeat Simple_repeat 2 177 0 2122 175 35 9 chr11 87838150 87838601 -60944871 - L1P LINE L1 -2931 3215 2753 1773 164 74 0 chr11 87838598 87838897 -60944575 - L1PA13 LINE L1 -6466 321 1 * 401 283 58 51 chr11 87839106 87839185 -60944287 - MIR SINE MIR -62 200 123 2527 62 0 0 chr11 87839185 87839489 -60943983 + AluY SINE Alu 1 304 -7 401 283 58 51 chr11 87839489 87839586 -60943886 - MIR SINE MIR -139 123 17 345 296 122 29 chr11 87839595 87839767 -60943705 + MLT1J LTR MaLR 4 191 -320 1323 179 3 105 chr11 87839938 87840263 -60943209 - AluJo SINE Alu -10 292 1 882 210 0 0 chr11 87840411 87840573 -60942899 + FRAM SINE Alu 2 163 -13 397 232 48 32 chr11 87840615 87840740 -60942732 + L1MC5 LINE L1 7630 7756 -205 830 160 0 8 chr11 87840741 87840866 -60942606 + FLAM_C SINE Alu 2 125 -8 24 32 0 0 chr11 87840867 87840898 -60942574 + AT_rich Low_complexity Low_complexity 1 31 0 530 178 10 0 chr11 87840902 87841003 -60942469 + L1MC5 LINE L1 7743 7844 -117 1359 291 57 17 chr11 87841137 87841708 -60941764 + L2 LINE L2 2530 3140 -173 1619 154 26 4 chr11 87841708 87841975 -60941497 - AluJb SINE Alu -39 273 1 1359 291 57 17 chr11 87841975 87842156 -60941316 + L2 LINE L2 3140 3312 -1 333 245 4 4 chr11 87842169 87842253 -60941219 - MIR SINE MIR -62 146 65 4590 140 59 65 chr11 87843164 87844594 -60938878 + pTR5 LTR ERV1 741 2295 -143 365 233 0 0 chr11 87844612 87844685 -60938787 + MER116 DNA Mariner 8 80 0 420 266 24 124 chr11 87845290 87845459 -60938013 - MIR3 SINE MIR -25 183 32 429 307 78 13 chr11 87845577 87845730 -60937742 - MIR3 SINE MIR -29 179 17 2837 149 38 4 chr11 87846439 87846935 -60936537 + L1MB7 LINE L1 5653 6165 -19 237 33 0 0 chr11 87847716 87847746 -60935726 + (T)n Simple_repeat Simple_repeat 1 30 0 402 298 145 50 chr11 87848682 87848944 -60934528 + L3b LINE CR1 1271 1557 -26 342 288 218 0 chr11 87849049 87849219 -60934253 - MIR SINE MIR 0 262 56 278 331 214 6 chr11 87850234 87850594 -60932878 - L3 LINE CR1 -77 1500 1066 180 0 0 0 chr11 87850981 87851001 -60932471 + (CAA)n Simple_repeat Simple_repeat 2 21 0 186 316 40 13 chr11 87852428 87852504 -60930968 - L2 LINE L2 -5 3308 3231 249 157 12 0 chr11 87853632 87853717 -60929755 + GA-rich Low_complexity Low_complexity 1 86 0 2316 109 0 0 chr11 87855390 87855693 -60927779 + AluSg SINE Alu 1 303 -7 1022 288 82 71 chr11 87855702 87856241 -60927231 + L1MC4a LINE L1 5711 6265 -1543 1651 145 13 40 chr11 87856241 87856544 -60926928 - AluJb SINE Alu -17 295 1 1022 288 82 71 chr11 87856544 87856880 -60926592 + L1MC4a LINE L1 6265 6596 -1212 1290 174 41 66 chr11 87857472 87857789 -60925683 + L1MC5 LINE L1 6633 6941 -1020 1957 98 55 7 chr11 87857798 87858072 -60925400 - AluSx SINE Alu -25 287 1 1573 217 47 76 chr11 87858072 87858522 -60924950 + L1MC5 LINE L1 6927 7388 -573 1590 152 115 0 chr11 87858522 87858792 -60924680 - AluJo SINE Alu -11 301 1 1573 217 47 76 chr11 87858792 87859170 -60924302 + L1MC5 LINE L1 7388 7924 -37 361 244 0 0 chr11 87859485 87859567 -60923905 + MIR SINE MIR 73 154 -108 270 132 0 0 chr11 87860713 87860766 -60922706 + (A)n Simple_repeat Simple_repeat 1 53 0 1067 255 16 0 chr11 87860871 87861114 -60922358 - MIR SINE MIR -13 249 3 289 277 36 0 chr11 87861289 87861372 -60922100 + MIR SINE MIR 69 154 -108 412 270 139 58 chr11 87861644 87861903 -60921569 + L2 LINE L2 3024 3303 -10 248 211 174 28 chr11 87861907 87862016 -60921456 - MIR SINE MIR -70 192 68 235 208 0 38 chr11 87862693 87862746 -60920726 - L2 LINE L2 -36 3236 3186 236 336 56 56 chr11 87863046 87863171 -60920301 + L2 LINE L2 3147 3271 -1 401 114 71 0 chr11 87863573 87863643 -60919829 - L1MB3 LINE L1 0 6183 6109 2051 127 16 23 chr11 87864030 87864338 -60919134 + AluJb SINE Alu 1 306 -6 222 364 52 0 chr11 87864593 87864670 -60918802 - L2 LINE L2 -58 3214 3134 182 217 203 14 chr11 87864793 87864862 -60918610 + L2 LINE L2 3172 3253 -19 186 43 0 0 chr11 87865514 87865537 -60917935 + (TC)n Simple_repeat Simple_repeat 2 24 0 324 0 0 0 chr11 87865544 87865580 -60917892 + (CA)n Simple_repeat Simple_repeat 2 37 0 1224 169 165 0 chr11 87865580 87865816 -60917656 - AluJo SINE Alu -37 275 1 500 227 84 79 chr11 87866077 87866280 -60917192 + MIR SINE MIR 49 252 -10 285 317 10 10 chr11 87867107 87867211 -60916261 + GA-rich Low_complexity Low_complexity 1 104 0 214 286 264 11 chr11 87867637 87867728 -60915744 + MIR3 SINE MIR 15 128 -80 468 305 24 55 chr11 87868568 87868732 -60914740 + MIR3 SINE MIR 29 187 -21 552 229 106 18 chr11 87869045 87869215 -60914257 - MIR3 SINE MIR -7 201 17 324 329 164 26 chr11 87870665 87871012 -60912460 + L2 LINE L2 2829 3223 -49 1362 97 0 0 chr11 87871198 87871373 -60912099 + AluSg/x SINE Alu 123 297 -13 265 308 56 42 chr11 87871952 87872095 -60911377 - MIR SINE MIR -40 222 78 411 326 65 11 chr11 87872138 87872322 -60911150 + MIR SINE MIR 34 227 -35 380 321 35 51 chr11 87872332 87872671 -60910801 + L2 LINE L2 2776 3108 -164 721 240 15 44 chr11 87872838 87873042 -60910430 - MIR SINE MIR -53 209 12 188 234 141 0 chr11 87873035 87873099 -60910373 + L2 LINE L2 3196 3268 -4 * 184 407 44 0 chr11 87873463 87873576 -60909896 + L3b LINE CR1 1123 1240 -343 2422 33 40 20 chr11 87873580 87873879 -60909593 + AluY SINE Alu 1 305 -6 1614 148 92 14 chr11 87873999 87874282 -60909190 - AluJo SINE Alu -2 310 6 820 229 103 18 chr11 87874693 87874916 -60908556 - MIR SINE MIR -1 261 20 768 213 52 0 chr11 87875463 87875599 -60907873 + FRAM SINE Alu 2 144 -32 325 264 44 0 chr11 87875956 87876047 -60907425 + MIR SINE MIR 113 207 -55 415 191 111 116 chr11 87876086 87876228 -60907244 - L1ME4a LINE L1 -6 6115 5973 2332 96 7 0 chr11 87876228 87876529 -60906943 - AluSp SINE Alu -10 303 1 415 191 111 116 chr11 87876529 87876585 -60906887 - L1ME4a LINE L1 -148 5973 5918 512 115 52 172 chr11 87877029 87877221 -60906251 + MER53 DNA DNA 1 169 -20 297 360 43 0 chr11 87877929 87878090 -60905382 - MIR SINE MIR -56 206 39 687 242 58 16 chr11 87878151 87878341 -60905131 - MIR SINE MIR -18 244 47 856 272 89 57 chr11 87878345 87879239 -60904233 + L1MA6 LINE L1 4937 5897 -403 382 241 98 30 chr11 87879861 87879994 -60903478 - MIR3 SINE MIR -42 166 25 2078 111 28 0 chr11 87881886 87882175 -60901297 - AluSq SINE Alu -16 297 1 263 49 24 0 chr11 87882414 87882455 -60901017 + (TAAAA)n Simple_repeat Simple_repeat 2 43 0 383 216 9 69 chr11 87882621 87882737 -60900735 + L1ME4a LINE L1 5581 5689 -432 825 165 0 0 chr11 87882749 87882876 -60900596 - FLAM_C SINE Alu -16 127 1 1549 201 33 7 chr11 87882978 87883277 -60900195 + AluJo SINE Alu 1 307 -5 270 220 121 0 chr11 87883281 87883372 -60900100 + L1ME4a LINE L1 5975 6076 -45 438 317 73 34 chr11 87883472 87883800 -60899672 + L1ME4a LINE L1 5563 5903 -218 290 222 133 22 chr11 87883983 87884073 -60899399 - L1ME4a LINE L1 -63 6058 5959 727 177 3 221 chr11 87885209 87885531 -60897941 + MIR SINE MIR 3 254 -8 2219 128 0 3 chr11 87885882 87886194 -60897278 - AluSx SINE Alu -1 311 1 265 270 26 61 chr11 87886664 87886779 -60896693 - MIR SINE MIR -28 234 124 552 279 139 44 chr11 87886781 87887075 -60896397 - L2 LINE L2 0 3313 2992 1590 194 7 0 chr11 87887075 87887348 -60896124 + AluJo SINE Alu 1 275 -37 829 142 23 7 chr11 87887364 87887670 -60895802 + GA-rich Low_complexity Low_complexity 1 311 0 2422 293 113 25 chr11 87887672 87888665 -60894807 - L2 LINE L2 -303 3010 1894 2089 154 0 0 chr11 87888665 87888977 -60894495 + AluJb SINE Alu 1 312 0 2422 293 113 25 chr11 87888977 87889186 -60894286 - L2 LINE L2 -1419 1894 1705 218 270 108 9 chr11 87889243 87889354 -60894118 - L2 LINE L2 -1583 1731 1610 233 314 25 59 chr11 87889382 87889500 -60893972 - MIR3 SINE MIR -81 127 14 1704 172 7 3 chr11 87889866 87890151 -60893321 + AluJb SINE Alu 1 286 -26 4835 95 8 0 chr11 87890196 87890828 -60892644 - L1PB2 LINE L1 0 6151 5515 2374 97 0 0 chr11 87890830 87891128 -60892344 + AluSc SINE Alu 3 300 -9 4275 157 19 19 chr11 87891451 87892247 -60891225 - L1P LINE L1 -2065 4081 3286 6725 68 23 5 chr11 87892410 87893359 -60890113 + L1P LINE L1 3670 4635 -1511 1721 183 7 0 chr11 87893982 87894266 -60889206 + AluJb SINE Alu 1 286 -26 201 159 0 0 chr11 87894965 87895009 -60888463 + (CA)n Simple_repeat Simple_repeat 1 44 0 1193 246 39 55 chr11 87896332 87896767 -60886705 - MER90 LTR ERV1 -186 428 1 307 284 69 10 chr11 87898217 87898319 -60885153 + L2 LINE L2 3156 3263 -9 378 285 92 0 chr11 87898950 87899080 -60884392 + MIR SINE MIR 2 143 -119 1983 122 7 0 chr11 87949332 87949602 -60833870 - AluSx SINE Alu -40 272 1 35 24 0 0 chr11 87949705 87949747 -60833725 + AT_rich Low_complexity Low_complexity 1 42 0 2272 78 29 13 chr11 87949868 87950174 -60833298 - AluY SINE Alu 0 311 1 556 239 87 68 chr11 87951033 87951338 -60832134 - L1MEc LINE L1 -5159 930 631 611 141 0 20 chr11 87951358 87951479 -60831993 + FLAM_A SINE Alu 18 136 0 537 265 24 56 chr11 87952246 87952528 -60830944 + MLT1H LTR MaLR 68 369 -180 2168 120 10 0 chr11 87952644 87952945 -60830527 - AluSq SINE Alu -4 309 6 22 80 0 0 chr11 87953299 87953349 -60830123 + AT_rich Low_complexity Low_complexity 1 50 0 213 94 0 0 chr11 87953379 87953411 -60830061 + (T)n Simple_repeat Simple_repeat 1 32 0 1571 106 4 9 chr11 87953413 87953640 -60829832 - AluSx SINE Alu -86 226 1 463 341 57 6 chr11 87953996 87954172 -60829300 + MIR SINE MIR 8 192 -70 1142 96 13 6 chr11 87954617 87954774 -60828698 + AluSx SINE Alu 1 158 -154 2370 92 3 0 chr11 87954964 87955267 -60828205 - AluSc SINE Alu -5 304 1 313 307 58 36 chr11 87955849 87955986 -60827486 - L2 LINE L2 -32 3281 3142 308 289 124 15 chr11 87956264 87956458 -60827014 + MIR SINE MIR 3 214 -48 296 286 195 0 chr11 87956656 87956733 -60826739 + L2 LINE L2 3161 3252 -20 2124 129 0 0 chr11 87956825 87957138 -60826334 + AluSx SINE Alu 1 313 0 444 240 16 127 chr11 87957661 87957943 -60825529 - MIR SINE MIR 0 262 20 21 57 0 0 chr11 87958021 87958056 -60825416 + AT_rich Low_complexity Low_complexity 1 35 0 2028 168 0 0 chr11 87958094 87958397 -60825075 - AluJb SINE Alu -9 303 1 275 173 107 0 chr11 87958405 87958480 -60824992 + L1ME LINE L1 5557 5639 -482 916 223 102 28 chr11 87958515 87958722 -60824750 - LTR16C LTR ERVL 0 491 256 2428 80 0 3 chr11 87958722 87959024 -60824448 + AluSq SINE Alu 1 301 -12 916 223 102 28 chr11 87959024 87959099 -60824373 - LTR16C LTR ERVL -235 256 188 268 348 163 17 chr11 87959428 87959606 -60823866 - L2 LINE L2 -186 3086 2883 28 0 0 0 chr11 87959749 87959777 -60823695 + AT_rich Low_complexity Low_complexity 1 28 0 2262 118 0 13 chr11 87960065 87960370 -60823102 - AluSx SINE Alu -11 301 1 35 24 0 0 chr11 87960473 87960515 -60822957 + AT_rich Low_complexity Low_complexity 1 42 0 2272 78 29 13 chr11 87960636 87960942 -60822530 - AluY SINE Alu 0 311 1 556 239 87 68 chr11 87961801 87962106 -60821366 - L1MEc LINE L1 -5159 930 631 611 141 0 20 chr11 87962126 87962247 -60821225 + FLAM_A SINE Alu 18 136 0 537 265 24 56 chr11 87963014 87963296 -60820176 + MLT1H LTR MaLR 68 369 -180 2168 120 10 0 chr11 87963412 87963713 -60819759 - AluSq SINE Alu -4 309 6 204 97 0 0 chr11 87964147 87964178 -60819294 + (T)n Simple_repeat Simple_repeat 1 31 0 1714 104 0 9 chr11 87964178 87964408 -60819064 - AluSx SINE Alu -84 228 1 463 341 57 6 chr11 87964853 87965029 -60818443 - MIR SINE MIR -70 192 8 2219 108 0 3 chr11 87965385 87965682 -60817790 + AluSx SINE Alu 1 296 -16 1617 118 9 116 chr11 87965934 87966263 -60817209 - AluSx SINE Alu -14 298 5 261 0 0 0 chr11 87966418 87966447 -60817025 + (CA)n Simple_repeat Simple_repeat 2 30 0 27 29 0 0 chr11 87966469 87966503 -60816969 + AT_rich Low_complexity Low_complexity 1 34 0 213 205 0 0 chr11 87967004 87967043 -60816429 - L2 LINE L2 -6 3307 3269 2029 129 0 11 chr11 87967223 87967552 -60815920 + AluSx SINE Alu 1 326 0 268 278 68 23 chr11 87967674 87967850 -60815622 + L1ME4a LINE L1 5934 6117 -4 1792 153 0 13 chr11 87967868 87968168 -60815304 + AluJb SINE Alu 2 297 -15 1441 134 20 157 chr11 87968346 87968703 -60814769 - AluSp SINE Alu -5 308 1 46 19 0 0 chr11 87968806 87968859 -60814613 + AT_rich Low_complexity Low_complexity 1 53 0 199 273 159 11 chr11 87969097 87969185 -60814287 + L2 LINE L2 3163 3263 -9 1107 107 38 0 chr11 87969973 87970152 -60813320 - AluSg/x SINE Alu 0 305 121 2382 48 7 10 chr11 87970246 87970538 -60812934 - AluSc SINE Alu -18 291 1 273 75 0 0 chr11 87974786 87974826 -60808646 + (T)n Simple_repeat Simple_repeat 1 40 0 2331 92 16 3 chr11 87977228 87977534 -60805938 - AluSp SINE Alu -2 311 2 27 29 0 0 chr11 87978066 87978100 -60805372 + AT_rich Low_complexity Low_complexity 1 34 0 1526 182 74 0 chr11 87979065 87979334 -60804138 + AluJo SINE Alu 1 289 -23 571 339 23 0 chr11 87981287 87981461 -60802011 - MIR SINE MIR -72 190 13 29 0 0 0 chr11 87981829 87981858 -60801614 + AT_rich Low_complexity Low_complexity 1 29 0 609 295 56 36 chr11 87982524 87982775 -60800697 - MIR SINE MIR -6 256 1 251 344 54 11 chr11 87985823 87985916 -60797556 + MIR SINE MIR 51 147 -61 240 241 52 0 chr11 87985907 87985965 -60797507 - MIR SINE MIR -73 135 75 * 1789 146 25 0 chr11 87986884 87987179 -60796293 - AluSx SINE Alu 0 303 2 22 35 0 0 chr11 87987459 87987488 -60795984 + AT_rich Low_complexity Low_complexity 1 29 0 281 326 38 76 chr11 87987498 87987630 -60795842 + MIR SINE MIR 14 140 -68 2314 91 0 19 chr11 87987639 87987947 -60795525 + AluSc SINE Alu 1 302 -7 321 118 0 0 chr11 87988159 87988210 -60795262 + (T)n Simple_repeat Simple_repeat 1 51 0 22 0 0 0 chr11 87988231 87988253 -60795219 + GC_rich Low_complexity Low_complexity 1 22 0 2155 125 10 6 chr11 87988398 87988709 -60794763 - AluSx SINE Alu 0 312 1 225 296 0 0 chr11 87988962 87989016 -60794456 - L2 LINE L2 -5 3267 3214 892 121 15 8 chr11 87989067 87989199 -60794273 - FLAM_C SINE Alu 0 133 1 698 250 88 5 chr11 87989268 87989472 -60794000 - MIR SINE MIR -34 228 8 1993 125 14 14 chr11 87989818 87990113 -60793359 - AluSx SINE Alu -17 295 1 2196 109 3 13 chr11 87990150 87990461 -60793011 + AluY SINE Alu 1 308 -3 4646 52 0 3 chr11 87990950 87991531 -60791941 + L1PA6 LINE L1 5576 6154 0 1795 126 83 0 chr11 87992746 87993000 -60790472 - AluSx SINE Alu -37 275 1 2372 51 0 57 chr11 87993194 87993508 -60789964 + AluY SINE Alu 1 296 -15 267 291 39 39 chr11 87993820 87993931 -60789541 - HAL1 LINE L1 -56 2451 2338 2109 125 0 0 chr11 87993931 87994220 -60789252 - AluSx SINE Alu -13 299 11 267 291 39 39 chr11 87994220 87994290 -60789182 - HAL1 LINE L1 -168 2339 2270 2000 108 0 52 chr11 87994302 87994609 -60788863 + AluSx SINE Alu 1 291 -21 324 249 180 48 chr11 87994654 87994759 -60788713 - HAL1 LINE L1 -310 2197 2107 1978 179 0 0 chr11 87994759 87995067 -60788405 - AluSg SINE Alu -2 308 1 324 249 180 48 chr11 87995067 87995150 -60788322 - HAL1 LINE L1 -400 2107 1984 56 48 0 0 chr11 87995910 87995994 -60787478 + AT_rich Low_complexity Low_complexity 1 84 0 21 0 0 0 chr11 87996198 87996219 -60787253 + AT_rich Low_complexity Low_complexity 1 21 0 231 309 65 3 chr11 87997311 87997451 -60786021 - MIR3 SINE MIR -13 195 6 2271 112 3 0 chr11 87998168 87998471 -60785001 - AluSq SINE Alu -9 304 1 2243 112 3 3 chr11 87998551 87998855 -60784617 + AluSq SINE Alu 1 304 -9 25 0 0 0 chr11 87999855 87999880 -60783592 + AT_rich Low_complexity Low_complexity 1 25 0 338 192 167 50 chr11 88000643 88000763 -60782709 - MIR SINE MIR -14 248 115 283 324 106 35 chr11 88000872 88001014 -60782458 - L2 LINE L2 -194 3078 2927 844 145 8 0 chr11 88001093 88001217 -60782255 - FLAM_C SINE Alu -18 125 1 219 269 67 29 chr11 88001232 88001336 -60782136 - L2 LINE L2 -505 2809 2702 2030 83 6 87 chr11 88001713 88002025 -60781447 - AluSx SINE Alu -11 301 15 846 173 0 0 chr11 88002354 88002487 -60780985 + AluJb SINE Alu 1 133 -179 666 203 8 0 chr11 88002721 88002839 -60780633 - FLAM_A SINE Alu -14 119 1 2194 63 52 3 chr11 88004019 88004306 -60779166 + AluY SINE Alu 1 301 -10 470 100 14 0 chr11 88004459 88004529 -60778943 - Alu SINE Alu -18 294 224 2301 90 0 7 chr11 88004672 88004972 -60778500 - AluSc SINE Alu -11 298 1 800 118 0 0 chr11 88004974 88005084 -60778388 - AluJb SINE Alu -13 299 190 1942 138 26 42 chr11 88005221 88005532 -60777940 - AluSx SINE Alu -4 308 3 301 287 233 30 chr11 88005743 88005945 -60777527 + MIR SINE MIR 13 255 -7 2258 106 0 0 chr11 88005976 88006268 -60777204 - AluSq SINE Alu -15 298 7 234 254 16 16 chr11 88006272 88006335 -60777137 + MIR3 SINE MIR 120 182 -26 268 327 80 47 chr11 88006403 88006553 -60776919 - L2 LINE L2 -16 3256 3102 457 234 80 66 chr11 88006853 88007168 -60776304 + LTR15 LTR ERV1 177 596 0 279 275 52 150 chr11 88007168 88007361 -60776111 + MIR SINE MIR 77 250 -12 213 319 181 63 chr11 88009911 88010149 -60773323 - L2 LINE L2 0 3272 3007 364 341 118 22 chr11 88010151 88010517 -60772955 + L2 LINE L2 2253 2653 -661 2212 88 10 3 chr11 88010522 88010818 -60772654 - AluY SINE Alu -13 298 1 333 62 0 0 chr11 88011056 88011104 -60772368 + (TG)n Simple_repeat Simple_repeat 1 48 0 295 291 28 122 chr11 88011121 88011375 -60772097 + L2 LINE L2 2943 3172 -100 187 347 42 42 chr11 88011433 88011600 -60771872 - L2 LINE L2 -432 2882 2716 192 271 21 0 chr11 88012013 88012061 -60771411 + L2 LINE L2 3216 3264 -8 23 0 0 0 chr11 88012399 88012422 -60771050 + AT_rich Low_complexity Low_complexity 1 23 0 1316 250 102 18 chr11 88012534 88012986 -60770486 - L1MCb LINE L1 -5555 490 1 539 262 123 45 chr11 88013452 88013784 -60769688 - MLT1G1 LTR MaLR 0 595 238 247 288 59 27 chr11 88014031 88014250 -60769222 - L1ME3A LINE L1 -239 5931 5706 242 316 53 18 chr11 88015029 88015143 -60768329 + L2 LINE L2 2259 2376 -938 22 0 0 0 chr11 88015354 88015376 -60768096 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr11 88015643 88015666 -60767806 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 6748 59 17 4 chr11 88015668 88017256 -60766216 - L1PA8 LINE L1 -17 6155 4557 190 386 40 0 chr11 88017435 88017536 -60765936 + L2 LINE L2 3178 3282 -31 266 266 109 0 chr11 88017594 88017658 -60765814 + L2 LINE L2 3193 3263 -9 1866 143 13 20 chr11 88017658 88017958 -60765514 - AluSx SINE Alu -10 302 5 2305 126 0 0 chr11 88018054 88018363 -60765109 - AluSg SINE Alu -1 309 1 350 151 68 0 chr11 88018525 88018598 -60764874 - L1M4 LINE L1 -5160 1382 1305 2038 172 0 0 chr11 88018606 88018914 -60764558 - AluSx SINE Alu -4 308 1 1749 205 70 33 chr11 88018914 88019026 -60764446 + L1ME LINE L1 4846 4952 -1214 1509 151 27 23 chr11 88019026 88019325 -60764147 + L1PA16 LINE L1 5867 6166 0 1749 205 70 33 chr11 88019325 88019889 -60763583 + L1ME LINE L1 4952 5712 -454 222 207 121 0 chr11 88019890 88019948 -60763524 + L2 LINE L2 3249 3313 0 423 283 5 10 chr11 88020343 88020537 -60762935 + Charlie8 DNA MER1_type 3 275 -2142 2225 130 22 14 chr11 88021108 88021470 -60762002 + MLT1A1 LTR MaLR 1 365 0 2513 91 11 3 chr11 88021627 88021989 -60761483 - THE1C LTR MaLR -1 374 10 354 267 344 10 chr11 88022263 88022458 -60761014 - MIR SINE MIR 0 262 3 1784 150 19 45 chr11 88022690 88023003 -60760469 - AluJo SINE Alu -7 305 1 246 32 0 0 chr11 88023026 88023057 -60760415 + (TG)n Simple_repeat Simple_repeat 1 31 0 180 369 195 5 chr11 88023109 88023499 -60759973 - L2 LINE L2 -580 2734 2271 565 141 0 0 chr11 88023532 88023617 -60759855 - AluJ/FLAM SINE Alu -227 85 1 22 0 0 0 chr11 88023752 88023774 -60759698 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 88025619 88025640 -60757832 + AT_rich Low_complexity Low_complexity 1 21 0 203 300 100 0 chr11 88025669 88025729 -60757743 - MIR3 SINE MIR -44 164 99 1514 148 36 73 chr11 88026186 88026489 -60756983 + AluJo SINE Alu 1 292 -20 1907 140 10 10 chr11 88026744 88027052 -60756420 - AluSx SINE Alu -4 308 1 364 358 70 5 chr11 88027368 88027555 -60755917 - L1M4c LINE L1 -4543 1841 1643 21 36 0 0 chr11 88027575 88027603 -60755869 + AT_rich Low_complexity Low_complexity 1 28 0 709 237 50 57 chr11 88028208 88028568 -60754904 - L1ME LINE L1 -663 5499 5149 2286 110 0 0 chr11 88028568 88028860 -60754612 - AluSg SINE Alu -18 292 1 709 237 50 57 chr11 88028860 88029065 -60754407 - L1ME LINE L1 -1013 5149 4944 193 254 48 48 chr11 88029186 88029249 -60754223 + MIR SINE MIR 6 68 -194 3140 157 31 30 chr11 88029259 88029926 -60753546 - L1MA4 LINE L1 -5 6295 5628 2402 205 60 58 chr11 88029914 88030470 -60753002 - L1 LINE L1 -3773 2555 2002 2081 127 3 0 chr11 88030470 88030761 -60752711 - AluSx SINE Alu -15 297 6 2402 205 60 58 chr11 88030761 88030998 -60752474 - L1 LINE L1 -4326 2002 1753 2538 30 7 3 chr11 88030998 88031296 -60752176 - AluY SINE Alu -12 299 1 2402 205 60 58 chr11 88031296 88031383 -60752089 - L1 LINE L1 -4575 1753 1668 1145 70 0 0 chr11 88031388 88031530 -60751942 - LTR30 LTR ERV1 -578 144 3 2944 94 0 8 chr11 88031532 88031927 -60751545 - HERV30 LTR ERV1 0 8257 7866 24786 91 4 2 chr11 88031950 88035131 -60748341 - HERV30 LTR ERV1 -5070 3187 1 945 129 103 0 chr11 88035131 88035286 -60748186 - LTR30 LTR ERV1 0 722 552 7627 170 27 8 chr11 88035292 88036936 -60746536 - L1 LINE L1 -4065 1263 6 1285 307 61 4 chr11 88036951 88037423 -60746049 - L2 LINE L2 -1 3312 2814 568 244 84 0 chr11 88037439 88037570 -60745902 - FLAM_A SINE Alu 0 142 1 1562 214 52 61 chr11 88037573 88037634 -60745838 - L2 LINE L2 -566 2748 2688 2061 128 3 3 chr11 88037634 88037931 -60745541 + AluSx SINE Alu 1 297 -15 1562 214 52 61 chr11 88037931 88038364 -60745108 - L2 LINE L2 -626 2688 2258 21 36 0 0 chr11 88038839 88038867 -60744605 + AT_rich Low_complexity Low_complexity 1 28 0 27 49 0 0 chr11 88038952 88038993 -60744479 + AT_rich Low_complexity Low_complexity 1 41 0 959 158 24 12 chr11 88039289 88039454 -60744018 + AluJo SINE Alu 120 286 -26 40 0 0 0 chr11 88039469 88039509 -60743963 + AT_rich Low_complexity Low_complexity 1 40 0 203 86 57 0 chr11 88039751 88039786 -60743686 + (ATG)n Simple_repeat Simple_repeat 3 39 0 24 67 0 0 chr11 88039840 88039885 -60743587 + AT_rich Low_complexity Low_complexity 1 45 0 1773 191 7 0 chr11 88039951 88040249 -60743223 + AluJb SINE Alu 1 300 -12 1121 160 0 0 chr11 88040299 88040468 -60743004 + AluSp SINE Alu 137 305 -8 1759 130 83 0 chr11 88041076 88041330 -60742142 - AluSx SINE Alu -37 275 1 2391 51 0 57 chr11 88041524 88041838 -60741634 + AluY SINE Alu 1 296 -15 296 243 209 77 chr11 88042120 88042261 -60741211 - HAL1 LINE L1 -2 2505 2384 2101 125 0 0 chr11 88042261 88042550 -60740922 - AluSx SINE Alu -13 299 11 296 243 209 77 chr11 88042550 88042632 -60740840 - HAL1 LINE L1 -123 2384 2314 2004 108 0 52 chr11 88042632 88042939 -60740533 + AluSx SINE Alu 1 291 -21 296 243 209 77 chr11 88042939 88043089 -60740383 - HAL1 LINE L1 -193 2314 2185 2223 104 3 7 chr11 88043089 88043398 -60740074 - AluSg SINE Alu -2 308 1 296 243 209 77 chr11 88043398 88043463 -60740009 - HAL1 LINE L1 -322 2185 2007 56 48 0 0 chr11 88044241 88044325 -60739147 + AT_rich Low_complexity Low_complexity 1 84 0 22 0 0 0 chr11 88044529 88044551 -60738921 + AT_rich Low_complexity Low_complexity 1 22 0 226 309 65 3 chr11 88045643 88045783 -60737689 - MIR3 SINE MIR -13 195 6 2192 109 0 7 chr11 88046500 88046802 -60736670 - AluSc SINE Alu -9 300 1 823 118 0 0 chr11 88046804 88046914 -60736558 - AluJb SINE Alu -13 299 190 1918 138 26 42 chr11 88047051 88047362 -60736110 - AluSx SINE Alu -4 308 3 260 282 233 30 chr11 88047573 88047775 -60735697 + MIR SINE MIR 13 255 -7 2256 106 0 0 chr11 88047806 88048098 -60735374 - AluSq SINE Alu -15 298 7 231 254 16 16 chr11 88048102 88048165 -60735307 + MIR3 SINE MIR 120 182 -26 250 327 93 60 chr11 88048233 88048383 -60735089 - L2 LINE L2 -16 3256 3102 473 213 138 91 chr11 88048683 88048997 -60734475 + LTR15 LTR ERV1 177 596 0 267 275 52 150 chr11 88048997 88049190 -60734282 + MIR SINE MIR 77 250 -12 182 256 107 50 chr11 88051430 88051551 -60731921 + L2 LINE L2 1854 1981 -1333 213 304 264 8 chr11 88051741 88051866 -60731606 - L2 LINE L2 0 3272 3116 306 341 118 22 chr11 88051981 88052347 -60731125 + L2 LINE L2 2253 2653 -661 411 291 108 13 chr11 88052652 88052810 -60730662 + MIR SINE MIR 16 188 -74 2334 112 0 0 chr11 88052848 88053161 -60730311 + AluSq SINE Alu 1 313 0 461 241 70 43 chr11 88053162 88053349 -60730123 - MIR SINE MIR 0 262 71 214 174 0 22 chr11 88053492 88053538 -60729934 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 1635 173 0 0 chr11 88053706 88053966 -60729506 + AluJb SINE Alu 1 260 -52 226 301 48 48 chr11 88054539 88054616 -60728856 - MARNA DNA Mariner -259 327 248 2273 92 3 13 chr11 88054616 88054920 -60728552 + AluSp SINE Alu 1 301 -12 226 301 48 48 chr11 88054920 88054988 -60728484 - MARNA DNA Mariner -337 249 182 2093 131 0 7 chr11 88055221 88055518 -60727954 + AluSx SINE Alu 1 295 -17 431 202 12 0 chr11 88055918 88056002 -60727470 + L1ME3A LINE L1 6025 6109 -61 26 82 0 0 chr11 88056002 88056063 -60727409 + AT_rich Low_complexity Low_complexity 1 61 0 2081 113 41 7 chr11 88056067 88056358 -60727114 + AluSx SINE Alu 1 301 -11 2115 115 13 13 chr11 88056580 88056885 -60726587 + AluSx SINE Alu 1 305 -7 1324 253 82 66 chr11 88056903 88057323 -60726149 + L1MC4 LINE L1 7315 7753 -289 1692 200 204 39 chr11 88057323 88057789 -60725683 + MLT1H LTR MaLR 4 546 -3 1324 253 82 66 chr11 88057789 88058084 -60725388 + L1MC4 LINE L1 7753 8042 0 873 214 28 16 chr11 88059558 88059740 -60723732 - AluJo SINE Alu -128 184 1 453 304 36 14 chr11 88059902 88060040 -60723432 + MIR SINE MIR 47 187 -75 487 283 7 14 chr11 88060156 88060294 -60723178 + MIR3 SINE MIR 71 207 -1 277 242 30 0 chr11 88060667 88060733 -60722739 + MIR3 SINE MIR 93 160 -48 681 196 144 36 chr11 88060733 88060800 -60722672 + MER58C DNA MER1_type 1 59 -2361 1766 169 0 10 chr11 88060800 88061102 -60722370 - AluJo SINE Alu -11 301 3 681 196 144 36 chr11 88061102 88061228 -60722244 + MER58C DNA MER1_type 59 215 0 248 185 37 0 chr11 88061228 88061282 -60722190 + MIR3 SINE MIR 153 208 0 782 179 49 0 chr11 88062278 88062401 -60721071 + FLAM_C SINE Alu 2 130 -13 1635 141 48 0 chr11 88062525 88062794 -60720678 + AluJb SINE Alu 17 298 -14 2302 92 0 3 chr11 88063440 88063732 -60719740 + AluSc SINE Alu 2 292 -17 1411 140 0 23 chr11 88063790 88064011 -60719461 - AluJo SINE Alu -12 300 85 1704 178 24 17 chr11 88064285 88064577 -60718895 + AluJb SINE Alu 1 294 -18 512 224 11 62 chr11 88064965 88065144 -60718328 + MER104 DNA Tc2 7 176 -4 520 121 0 0 chr11 88065182 88065248 -60718224 + AluSg/x SINE Alu 215 280 -30 1018 274 133 32 chr11 88065269 88065645 -60717827 + MLT1J2 LTR MaLR 1 414 -36 194 332 101 39 chr11 88066504 88066712 -60716760 - MIR SINE MIR -37 225 5 527 298 92 26 chr11 88067474 88067687 -60715785 + MIR SINE MIR 20 244 -18 200 33 0 33 chr11 88068106 88068117 -60715355 + (TAAA)n Simple_repeat Simple_repeat 3 13 -18 1862 156 0 14 chr11 88068117 88068400 -60715072 + AluSx SINE Alu 1 279 -33 200 33 0 33 chr11 88068400 88068418 -60715054 + (TAAA)n Simple_repeat Simple_repeat 13 31 0 320 289 74 109 chr11 88068486 88068742 -60714730 + L2 LINE L2 3026 3272 0 1724 190 0 19 chr11 88068888 88069204 -60714268 + AluJb SINE Alu 1 310 -2 479 290 57 57 chr11 88069332 88069566 -60713906 + MIR SINE MIR 9 250 -12 1463 196 10 102 chr11 88069912 88070314 -60713158 + MLT1A1 LTR MaLR 1 365 0 2966 133 9 11 chr11 88070340 88070797 -60712675 - L1MB2 LINE L1 -19 6152 5697 216 289 0 0 chr11 88070843 88070888 -60712584 + L2 LINE L2 3264 3308 -5 426 278 0 17 chr11 88070974 88071089 -60712383 + MIR SINE MIR 23 135 -127 2461 153 87 63 chr11 88072825 88073536 -60709936 - L1MC4 LINE L1 0 8042 7269 346 274 59 0 chr11 88073539 88073641 -60709831 - MIR SINE MIR -115 147 40 1909 151 11 0 chr11 88073726 88074010 -60709462 - AluJb SINE Alu -25 287 1 834 215 135 7 chr11 88074010 88074284 -60709188 - L1MC4a LINE L1 -1815 5993 5685 320 280 37 68 chr11 88074338 88074531 -60708941 + MIR3 SINE MIR 4 193 -69 2029 227 109 77 chr11 88074537 88074697 -60708775 + L1MC4 LINE L1 6962 7115 -927 2067 110 31 14 chr11 88074697 88074988 -60708484 + AluSq SINE Alu 1 296 -17 2029 227 109 77 chr11 88074988 88075470 -60708002 + L1MC4 LINE L1 7115 7646 -396 2779 173 22 83 chr11 88075470 88076023 -60707449 + MLT2B3 LTR ERVL 1 517 -37 210 37 0 0 chr11 88076023 88076050 -60707422 + (TCCA)n Simple_repeat Simple_repeat 2 28 0 2779 173 22 83 chr11 88076050 88076086 -60707386 + MLT2B3 LTR ERVL 517 554 0 2029 227 109 77 chr11 88076086 88076368 -60707104 + L1MC4 LINE L1 7646 7917 -125 756 183 56 0 chr11 88076462 88076615 -60706857 - FLAM_A SINE Alu 0 160 1 233 214 71 14 chr11 88077430 88077491 -60705981 - MIR SINE MIR -83 179 112 2304 99 0 7 chr11 88077491 88077793 -60705679 + AluSx SINE Alu 1 300 -12 1468 134 110 72 chr11 88078889 88079180 -60704292 - AluJb SINE Alu -10 302 1 293 227 11 68 chr11 88079373 88079461 -60704011 - L3 LINE CR1 -82 1495 1413 1126 197 52 62 chr11 88079563 88079868 -60703604 - L1MC4 LINE L1 -255 7787 7486 1466 197 68 10 chr11 88079893 88080188 -60703284 + AluJb SINE Alu 1 312 0 219 36 0 0 chr11 88080188 88080216 -60703256 + (GGAAA)n Simple_repeat Simple_repeat 1 28 0 782 175 0 0 chr11 88080218 88080332 -60703140 - FLAM_C SINE Alu -28 115 2 395 211 0 0 chr11 88080332 88080408 -60703064 - L1MC4 LINE L1 -543 7499 7424 268 170 0 0 chr11 88080605 88080652 -60702820 - MIR SINE MIR -133 129 83 2049 122 3 7 chr11 88081328 88081624 -60701848 - AluSx SINE Alu -17 295 1 273 260 27 14 chr11 88081748 88081821 -60701651 - L2 LINE L2 0 3272 3199 184 317 183 0 chr11 88081938 88082020 -60701452 + L2 LINE L2 3134 3230 -42 316 290 49 49 chr11 88082070 88082232 -60701240 - MIR SINE MIR -96 166 5 780 304 99 67 chr11 88082262 88082482 -60700990 + L2 LINE L2 2311 2523 -749 2228 96 0 35 chr11 88082482 88082617 -60700855 + AluSq SINE Alu 1 139 -174 2135 115 14 7 chr11 88082617 88082913 -60700559 + AluSx SINE Alu 2 299 -13 2228 96 0 35 chr11 88082913 88083090 -60700382 + AluSq SINE Alu 139 302 -11 780 304 99 67 chr11 88083090 88083793 -60699679 + L2 LINE L2 2523 3255 -17 219 318 71 0 chr11 88083862 88083947 -60699525 - MIR SINE MIR -109 153 63 186 43 0 0 chr11 88084894 88084917 -60698555 + (GGGTG)n Simple_repeat Simple_repeat 3 25 0 1495 162 10 37 chr11 88087571 88087867 -60695605 + AluJb SINE Alu 1 288 -24 876 189 12 30 chr11 88088818 88088982 -60694490 + FRAM SINE Alu 1 160 -16 24 0 0 0 chr11 88089115 88089139 -60694333 + AT_rich Low_complexity Low_complexity 1 24 0 1897 145 14 0 chr11 88089281 88089578 -60693894 + AluSx SINE Alu 1 301 -11 2124 104 14 7 chr11 88090017 88090314 -60693158 + AluSq SINE Alu 1 299 -14 271 297 77 71 chr11 88090616 88090771 -60692701 - MIR3 SINE MIR -21 187 32 2346 102 0 0 chr11 88091229 88091532 -60691940 - AluSx SINE Alu -9 303 1 2145 90 28 7 chr11 88091835 88092125 -60691347 - AluSg SINE Alu -14 296 1 813 171 103 0 chr11 88092570 88092716 -60690756 - FAM SINE Alu -6 43 1 1952 139 14 3 chr11 88094399 88094694 -60688778 + AluSq SINE Alu 7 304 -9 811 179 90 7 chr11 88094694 88094839 -60688633 + AluJo/FRAM SINE Alu 137 293 -19 475 302 112 0 chr11 88095808 88095977 -60687495 + MIR SINE MIR 3 190 -72 761 176 15 0 chr11 88096282 88096413 -60687059 - AluSg SINE Alu -7 303 171 952 76 0 0 chr11 88096413 88096532 -60686940 - AluSg SINE Alu -191 119 1 201 275 43 14 chr11 88096645 88096714 -60686758 + MIR SINE MIR 31 101 -161 390 296 38 8 chr11 88096791 88096923 -60686549 + MER5A DNA MER1_type 4 139 -50 2818 133 13 27 chr11 88096934 88097384 -60686088 - MLT2A1 LTR ERVL 0 444 1 1539 125 40 40 chr11 88097560 88097864 -60685608 - AluY SINE Alu -7 304 1 636 131 10 10 chr11 88097864 88097963 -60685509 - AluY SINE Alu -177 134 36 1320 141 183 30 chr11 88098000 88098262 -60685210 + AluJo SINE Alu 1 302 0 847 210 12 0 chr11 88098488 88098655 -60684817 + AluJb SINE Alu 120 288 -24 1180 112 101 0 chr11 88098785 88098964 -60684508 + MER30 DNA MER1_type 1 197 -33 2236 78 10 20 chr11 88099018 88099314 -60684158 + AluSc SINE Alu 1 293 -16 1195 183 198 38 chr11 88099496 88099863 -60683609 - Charlie4a DNA MER1_type -1460 501 47 1891 141 10 14 chr11 88099863 88100154 -60683318 + AluSx SINE Alu 2 291 -21 1195 183 198 38 chr11 88100154 88100207 -60683265 - Charlie4a DNA MER1_type -1914 47 4 1796 176 0 0 chr11 88100549 88100838 -60682634 + AluJo SINE Alu 17 305 -7 1652 119 82 4 chr11 88101444 88101734 -60681738 - AluSx SINE Alu 0 312 1 245 320 64 48 chr11 88102197 88102322 -60681150 - L2 LINE L2 -5 3308 3182 376 167 10 42 chr11 88102916 88103012 -60680460 + L1MA4 LINE L1 6204 6296 -4 1793 164 28 0 chr11 88103046 88103333 -60680139 - AluJb SINE Alu -17 295 1 471 203 120 27 chr11 88103447 88103567 -60679905 - L1ME1 LINE L1 -33 6133 6021 915 138 0 44 chr11 88103635 88103794 -60679678 + AluSc SINE Alu 146 297 -12 605 202 101 0 chr11 88103971 88104090 -60679382 + FLAM_A SINE Alu 2 132 -1 1544 133 111 15 chr11 88104396 88104666 -60678806 + AluSg SINE Alu 1 296 -14 381 219 12 12 chr11 88104666 88104748 -60678724 + MIR3 SINE MIR 100 181 -27 188 282 167 0 chr11 88104965 88105043 -60678429 + MIR3 SINE MIR 115 205 -3 2140 106 3 50 chr11 88106274 88106594 -60676878 + AluSx SINE Alu 1 305 -7 2129 89 0 36 chr11 88106851 88107154 -60676318 - AluY SINE Alu -19 292 1 644 246 82 65 chr11 88107462 88107715 -60675757 - MIR SINE MIR -5 257 1 600 281 156 26 chr11 88108258 88108489 -60674983 + MIR SINE MIR 2 262 0 388 270 153 0 chr11 88108663 88108826 -60674646 - MIR SINE MIR 0 262 75 734 200 159 10 chr11 88108914 88109109 -60674363 - MER2 DNA MER2_type 0 345 122 1931 146 0 14 chr11 88109112 88109400 -60674072 + AluJb SINE Alu 3 286 -26 273 152 22 0 chr11 88109413 88109459 -60674013 - MER2 DNA MER2_type -209 136 90 1332 140 0 53 chr11 88109459 88109687 -60673785 - AluJo SINE Alu -11 301 86 285 150 0 0 chr11 88109688 88109728 -60673744 - MER2 DNA MER2_type -250 95 56 615 141 0 0 chr11 88109736 88109828 -60673644 + FRAM SINE Alu 72 163 -13 236 222 0 0 chr11 88109830 88109875 -60673597 - MER2 DNA MER2_type -300 45 1 500 208 62 8 chr11 88110447 88110577 -60672895 - Charlie7 DNA MER1_type -48 2564 2428 773 259 112 28 chr11 88110580 88111142 -60672330 - Charlie7 DNA MER1_type -1939 673 5 25 23 0 23 chr11 88111396 88111414 -60672058 + AT_rich Low_complexity Low_complexity 1 18 -24 2427 62 0 20 chr11 88111414 88111718 -60671754 - AluY SINE Alu -13 298 1 25 23 0 23 chr11 88111718 88111742 -60671730 + AT_rich Low_complexity Low_complexity 18 42 0 391 266 48 32 chr11 88111776 88111900 -60671572 + MIR SINE MIR 41 166 -96 218 221 59 44 chr11 88111926 88111994 -60671478 - MIR SINE MIR -16 246 178 921 269 69 27 chr11 88112000 88112378 -60671094 + MLT1J2 LTR MaLR 6 409 0 887 153 0 0 chr11 88113202 88113333 -60670139 - FLAM_C SINE Alu -2 131 1 568 148 0 0 chr11 88113415 88113503 -60669969 + AluSg/x SINE Alu 213 300 -12 254 167 56 56 chr11 88113510 88113582 -60669890 + L1 LINE L1 3857 3928 -2218 267 274 14 27 chr11 88113623 88113696 -60669776 + MIR SINE MIR 45 116 -92 585 252 129 58 chr11 88113750 88113894 -60669578 + L1M4 LINE L1 3697 3829 -2317 2306 86 0 6 chr11 88113894 88114208 -60669264 + AluSx SINE Alu 1 312 0 585 252 129 58 chr11 88114208 88114373 -60669099 + L1M4 LINE L1 3829 4028 -2118 1317 117 0 0 chr11 88114456 88114635 -60668837 + AluSg/x SINE Alu 123 301 -9 678 262 161 16 chr11 88114662 88115029 -60668443 + L1M4 LINE L1 4105 4524 -1622 2373 58 31 0 chr11 88115184 88115476 -60667996 + AluY SINE Alu 10 310 -1 311 319 76 14 chr11 88115665 88115809 -60667663 - MIR SINE MIR -64 198 46 222 256 18 173 chr11 88116097 88116191 -60667281 + MIR SINE MIR 118 176 -86 2277 102 3 3 chr11 88116191 88116496 -60666976 + AluSx SINE Alu 4 308 -4 222 256 18 173 chr11 88116496 88116569 -60666903 + MIR SINE MIR 176 259 -3 256 161 0 54 chr11 88116846 88116902 -60666570 - L2 LINE L2 -5 3267 3215 519 309 48 38 chr11 88117012 88117222 -60666250 + MIR SINE MIR 3 214 -48 2145 118 14 0 chr11 88117297 88117594 -60665878 - AluSp SINE Alu -12 301 1 263 28 28 0 chr11 88117677 88117713 -60665759 + (TAA)n Simple_repeat Simple_repeat 3 39 0 810 325 96 12 chr11 88118159 88118565 -60664907 - L2 LINE L2 0 3313 2874 1142 258 62 66 chr11 88118629 88119139 -60664333 - L2 LINE L2 -2 3311 2800 2167 123 3 0 chr11 88119139 88119441 -60664031 - AluSx SINE Alu -9 303 1 1142 258 62 66 chr11 88119441 88119673 -60663799 - L2 LINE L2 -513 2800 1706 407 204 49 14 chr11 88119680 88119795 -60663677 - L1MC4 LINE L1 -6 8036 7804 238 250 43 52 chr11 88119808 88119924 -60663548 - L1ME3A LINE L1 -5 6165 6051 1819 246 112 22 chr11 88120137 88121493 -60661979 - L1ME3A LINE L1 -204 5966 4475 766 267 42 13 chr11 88122022 88122333 -60661139 - L1ME3A LINE L1 -1647 4499 4180 361 346 15 19 chr11 88122400 88122605 -60660867 - L1M4 LINE L1 -1146 5000 4797 249 217 0 14 chr11 88122693 88122762 -60660710 - L1M4 LINE L1 -1487 4659 4592 788 178 141 0 chr11 88122808 88122943 -60660529 + AluJb SINE Alu 141 294 -18 207 0 0 0 chr11 88122969 88122992 -60660480 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1747 132 8 0 chr11 88122996 88123238 -60660234 - AluSx SINE Alu -34 278 35 305 309 149 11 chr11 88123306 88123481 -60659991 - L1M4 LINE L1 -1695 4451 4253 1861 186 0 16 chr11 88123482 88123799 -60659673 - AluJo SINE Alu 0 312 1 334 269 118 0 chr11 88124039 88124158 -60659314 - L2 LINE L2 -658 2656 2524 310 235 257 0 chr11 88124231 88124367 -60659105 - L3 LINE CR1 -3 1574 1404 201 284 179 11 chr11 88124367 88124462 -60659010 - L2 LINE L2 0 3272 3162 225 293 47 47 chr11 88124605 88124755 -60658717 - L1 LINE L1 -1695 4451 4302 832 196 0 7 chr11 88124788 88124931 -60658541 - FRAM SINE Alu 0 40 1 1794 149 0 54 chr11 88124932 88125248 -60658224 + AluJb SINE Alu 3 301 -11 1908 161 3 3 chr11 88125409 88125720 -60657752 - AluJo SINE Alu -1 311 1 1475 190 55 28 chr11 88125732 88126022 -60657450 - AluSx SINE Alu -14 298 1 800 236 19 0 chr11 88126555 88126716 -60656756 - FRAM SINE Alu -12 164 1 863 155 0 0 chr11 88127518 88127664 -60655808 + FLAM_C SINE Alu 1 146 0 198 314 67 38 chr11 88128100 88128205 -60655267 + L2 LINE L2 2614 2721 -593 2125 128 0 3 chr11 88128396 88128693 -60654779 - AluSx SINE Alu -16 296 1 1182 234 138 47 chr11 88128693 88128888 -60654584 + L1MC4a LINE L1 5360 5536 -2272 1975 162 0 7 chr11 88128888 88129191 -60654281 - AluSx SINE Alu -11 301 1 1182 234 138 47 chr11 88129191 88129431 -60654041 + L1MC4a LINE L1 5536 5858 -1950 1935 153 7 3 chr11 88129431 88129726 -60653746 + AluSx SINE Alu 1 296 -16 1182 234 138 47 chr11 88129726 88129839 -60653633 + L1MC4a LINE L1 5858 5959 -1849 283 243 115 47 chr11 88130058 88130206 -60653266 - MIR SINE MIR -81 181 24 324 303 98 33 chr11 88130265 88130387 -60653085 + L2 LINE L2 3133 3262 -10 338 364 15 15 chr11 88131170 88131302 -60652170 + MIR3 SINE MIR 4 135 -73 1648 186 3 44 chr11 88131361 88131550 -60651922 - AluJo SINE Alu -7 305 133 1998 115 17 7 chr11 88131550 88131837 -60651635 + AluSx SINE Alu 1 290 -22 1648 186 3 44 chr11 88131837 88131965 -60651507 - AluJo SINE Alu -179 133 1 192 40 0 0 chr11 88132081 88132106 -60651366 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 24 0 0 0 chr11 88132225 88132249 -60651223 + AT_rich Low_complexity Low_complexity 1 24 0 1753 73 9 0 chr11 88132266 88132484 -60650988 + AluSg/x SINE Alu 84 303 -9 620 331 40 4 chr11 88132740 88132988 -60650484 + MIR SINE MIR 6 262 0 2247 128 0 0 chr11 88133085 88133397 -60650075 + AluSx SINE Alu 1 312 0 237 163 0 0 chr11 88134441 88134490 -60648982 + (CA)n Simple_repeat Simple_repeat 1 49 0 619 172 107 16 chr11 88134581 88134703 -60648769 - FLAM_C SINE Alu 0 133 1 306 351 8 23 chr11 88134858 88134989 -60648483 + MIR SINE MIR 17 145 -63 854 236 0 0 chr11 88135701 88135862 -60647610 - FRAM SINE Alu -12 164 4 653 152 60 43 chr11 88136334 88136518 -60646954 + MER53 DNA DNA 2 188 -1 804 145 0 0 chr11 88136600 88136740 -60646732 - FLAM_C SINE Alu 0 140 1 2213 132 0 0 chr11 88138123 88138433 -60645039 - AluSx SINE Alu -2 310 1 186 221 15 88 chr11 88138736 88138804 -60644668 + MIR SINE MIR 200 262 0 1496 114 27 9 chr11 88138885 88139140 -60644332 - AluSx SINE Alu 0 319 61 803 169 68 7 chr11 88139182 88139330 -60644142 - FRAM SINE Alu -6 170 14 833 182 63 6 chr11 88139501 88139660 -60643812 + FRAM SINE Alu 3 170 -6 239 232 0 18 chr11 88139982 88140038 -60643434 + CT-rich Low_complexity Low_complexity 2 56 0 21 0 0 0 chr11 88140044 88140065 -60643407 + AT_rich Low_complexity Low_complexity 1 21 0 276 320 90 4 chr11 88140311 88140462 -60643010 + MIR SINE MIR 64 235 -27 241 280 156 78 chr11 88140588 88140711 -60642761 - MIR SINE MIR 0 262 150 1969 164 3 0 chr11 88140711 88141009 -60642463 - AluJo SINE Alu -13 299 1 241 280 156 78 chr11 88141009 88141128 -60642344 - MIR SINE MIR -112 150 1 193 176 0 0 chr11 88141137 88141171 -60642301 + L2 LINE L2 3265 3298 -15 2256 102 0 0 chr11 88141325 88141619 -60641853 + AluY SINE Alu 1 294 -17 2263 106 0 0 chr11 88141627 88141928 -60641544 + AluSp SINE Alu 1 301 -12 676 212 8 0 chr11 88142344 88142462 -60641010 - AluJb SINE Alu -193 119 1 2021 150 0 0 chr11 88142467 88142767 -60640705 - AluSx SINE Alu -12 300 1 21 0 0 0 chr11 88143342 88143363 -60640109 + AT_rich Low_complexity Low_complexity 1 21 0 1697 263 124 49 chr11 88143405 88144385 -60639087 + L1M3e LINE L1 1 1054 -5976 528 115 41 153 chr11 88144446 88144527 -60638945 + L1M3e LINE L1 1947 2035 -4992 2160 110 0 46 chr11 88144527 88144855 -60638617 + AluSq SINE Alu 1 313 0 528 115 41 153 chr11 88144855 88145026 -60638446 + L1M3e LINE L1 2035 2151 -4876 252 265 0 0 chr11 88145009 88145077 -60638395 + L1M3e LINE L1 2513 2580 -4527 * 346 151 0 0 chr11 88145079 88145132 -60638340 + Alu SINE Alu 1 53 -249 2006 158 3 0 chr11 88145171 88145468 -60638004 + AluSx SINE Alu 1 298 -14 1008 99 15 0 chr11 88145470 88145601 -60637871 + AluSp SINE Alu 1 133 -180 496 156 0 114 chr11 88145621 88145788 -60637684 + L1MA9 LINE L1 5105 5252 -894 266 118 0 59 chr11 88145788 88145839 -60637633 - Alu SINE Alu -5 296 249 25 0 0 0 chr11 88145839 88145864 -60637608 + AT_rich Low_complexity Low_complexity 1 25 0 3432 160 35 44 chr11 88145864 88146585 -60636887 + L1MA9 LINE L1 5547 6262 -50 2103 127 3 3 chr11 88146585 88146884 -60636588 - AluSx SINE Alu -12 300 2 3432 160 35 44 chr11 88146884 88146935 -60636537 + L1MA9 LINE L1 6262 6312 0 10344 41 74 9 chr11 88147602 88148920 -60634552 + SVA Other Other 1 1386 0 2264 91 0 28 chr11 88149066 88149384 -60634088 + AluSg1 SINE Alu 1 309 0 2461 63 0 31 chr11 88149578 88149897 -60633575 + AluY SINE Alu 1 309 -2 43 0 0 0 chr11 88150544 88150587 -60632885 + AT_rich Low_complexity Low_complexity 1 43 0 2547 88 45 12 chr11 88150587 88150987 -60632485 - L1MA1 LINE L1 -1 6301 5889 25 0 0 0 chr11 88150995 88151020 -60632452 + AT_rich Low_complexity Low_complexity 1 25 0 213 353 20 20 chr11 88151159 88151261 -60632211 + MER5B DNA MER1_type 45 146 -32 * 216 293 13 27 chr11 88151198 88151273 -60632199 - MER5A DNA MER1_type -85 104 31 303 243 149 36 chr11 88151538 88151648 -60631824 - MIR SINE MIR -64 144 37 1901 106 80 0 chr11 88152706 88152980 -60630492 - AluSg SINE Alu -14 296 1 666 258 95 21 chr11 88152992 88153275 -60630197 + MLT1J LTR MaLR 205 508 -3 534 251 123 11 chr11 88153313 88153492 -60629980 + L2 LINE L2 3115 3313 0 503 391 22 58 chr11 88153610 88153971 -60629501 + L2 LINE L2 2911 3258 -14 241 302 183 8 chr11 88154105 88154231 -60629241 + MIR SINE MIR 42 189 -73 2076 124 7 0 chr11 88154700 88154990 -60628482 + AluSx SINE Alu 1 292 -20 204 97 0 0 chr11 88155107 88155138 -60628334 + (A)n Simple_repeat Simple_repeat 1 31 0 739 148 0 70 chr11 88155239 88155381 -60628091 - FLAM_C SINE Alu -11 132 1 242 257 100 14 chr11 88155435 88155505 -60627967 + MER2 DNA MER2_type 270 345 0 381 131 0 0 chr11 88155514 88155575 -60627897 + (CA)n Simple_repeat Simple_repeat 2 62 0 526 180 68 43 chr11 88155812 88155973 -60627499 + L1M4 LINE L1 4651 4815 -1331 702 186 108 0 chr11 88155994 88156149 -60627323 + FRAM SINE Alu 4 172 0 1062 132 35 25 chr11 88156149 88156346 -60627126 - MER2 DNA MER2_type -145 200 2 1870 98 0 0 chr11 88156501 88156736 -60626736 - AluSx SINE Alu -77 235 1 333 0 0 0 chr11 88157553 88157590 -60625882 + (T)n Simple_repeat Simple_repeat 1 37 0 1689 140 87 11 chr11 88157690 88157976 -60625496 - AluSx SINE Alu -4 308 1 195 69 0 0 chr11 88158382 88158411 -60625061 + (T)n Simple_repeat Simple_repeat 1 29 0 2224 162 0 27 chr11 88158437 88158838 -60624634 - MLT1B LTR MaLR 0 390 1 11431 140 26 26 chr11 88159302 88159525 -60623947 - L1MA2 LINE L1 0 6304 6082 1830 157 4 4 chr11 88159525 88159799 -60623673 - AluJb SINE Alu -38 274 1 11431 140 26 26 chr11 88159799 88160037 -60623435 - L1MA2 LINE L1 -222 6082 5845 2242 98 0 0 chr11 88160037 88160333 -60623139 - AluY SINE Alu -15 296 1 11431 140 26 26 chr11 88160333 88161346 -60622126 - L1MA2 LINE L1 -459 5845 4833 278 167 0 0 chr11 88161346 88161388 -60622084 + AluSg/x SINE Alu 133 174 -128 11431 140 26 26 chr11 88161388 88163112 -60620360 - L1MA2 LINE L1 -1471 4833 3064 2076 131 0 0 chr11 88163112 88163424 -60620048 - AluSx SINE Alu 0 312 1 11431 140 26 26 chr11 88163424 88163620 -60619852 - L1MA2 LINE L1 -3240 3064 2869 343 263 6 109 chr11 88164797 88164953 -60618519 - MIR SINE MIR -66 196 57 193 222 154 77 chr11 88164968 88165085 -60618387 - L2 LINE L2 0 3272 3147 295 296 15 74 chr11 88165488 88165623 -60617849 + MIR SINE MIR 16 142 -66 227 237 112 99 chr11 88166131 88166283 -60617189 + MER20B DNA MER1_type 1 154 -629 408 326 89 0 chr11 88166512 88166647 -60616825 - L2 LINE L2 -1 3271 3125 1388 217 58 24 chr11 88167158 88167573 -60615899 - L1ME1 LINE L1 -5 6161 5733 * 2247 185 59 31 chr11 88167571 88167850 -60615622 - L1MC4 LINE L1 -743 5403 5133 1797 135 14 24 chr11 88167850 88167985 -60615487 + AluSx SINE Alu 1 136 -176 2353 94 3 10 chr11 88167985 88168293 -60615179 + AluSp SINE Alu 1 306 -7 1797 135 14 24 chr11 88168293 88168453 -60615019 + AluSx SINE Alu 136 293 -19 2247 185 59 31 chr11 88168453 88169194 -60614278 - L1MC4 LINE L1 -1013 5133 4771 657 253 222 62 chr11 88170704 88171295 -60612177 - L2 LINE L2 -11 3302 2651 891 229 21 17 chr11 88171762 88172002 -60611470 - L2 LINE L2 -656 2658 2418 2153 109 7 0 chr11 88172005 88172299 -60611173 - AluSg SINE Alu -14 296 1 2404 109 49 7 chr11 88172299 88172729 -60610743 - L1P4 LINE L1 -381 5784 5337 205 282 128 13 chr11 88172731 88172809 -60610663 + MIR SINE MIR 176 262 0 * 330 290 110 7 chr11 88172800 88172955 -60610517 - L3 LINE CR1 -170 1407 1237 2269 57 7 11 chr11 88173082 88173400 -60610072 - AluY SINE Alu 0 317 1 288 0 0 0 chr11 88173404 88173436 -60610036 + (T)n Simple_repeat Simple_repeat 1 32 0 2263 122 3 0 chr11 88173582 88173893 -60609579 - AluSx SINE Alu 0 312 1 244 260 18 20 chr11 88173915 88174005 -60609467 - MER5A DNA MER1_type -82 96 5 801 191 5 62 chr11 88174086 88174280 -60609192 - MER20 DNA MER1_type -4 215 33 2348 79 7 0 chr11 88174524 88174815 -60608657 - AluSx SINE Alu -19 293 1 848 83 53 8 chr11 88175401 88175534 -60607938 - L1MB2 LINE L1 -6 6165 6027 1351 192 56 39 chr11 88175730 88176068 -60607404 - MER2 DNA MER2_type 0 344 1 998 113 0 0 chr11 88176849 88176982 -60606490 - AluSq/x SINE Alu -180 133 1 1363 274 23 34 chr11 88177009 88177447 -60606025 + L2 LINE L2 2879 3311 -2 424 322 117 0 chr11 88177742 88177910 -60605562 + MIR SINE MIR 5 197 -65 324 0 0 0 chr11 88177910 88177946 -60605526 + (CA)n Simple_repeat Simple_repeat 2 37 0 424 322 117 0 chr11 88177946 88177957 -60605515 + MIR SINE MIR 197 205 -57 24 0 0 0 chr11 88178316 88178340 -60605132 + AT_rich Low_complexity Low_complexity 1 24 0 1068 163 50 10 chr11 88178819 88178986 -60604486 - AluJo SINE Alu -16 296 118 219 36 0 0 chr11 88178986 88179014 -60604458 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1068 163 50 10 chr11 88179014 88179048 -60604424 - AluJo SINE Alu -194 118 87 393 246 47 18 chr11 88179433 88179577 -60603895 + MIR SINE MIR 115 262 0 428 270 49 84 chr11 88179920 88180146 -60603326 - MIR SINE MIR -11 251 34 208 336 161 38 chr11 88180175 88180598 -60602874 + L2 LINE L2 2227 2701 -613 376 283 72 22 chr11 88181079 88181217 -60602255 - MIR SINE MIR -111 151 7 25 51 0 0 chr11 88181307 88181346 -60602126 + AT_rich Low_complexity Low_complexity 1 39 0 1123 193 92 34 chr11 88181499 88181945 -60601527 + L1ME3A LINE L1 5127 5577 -593 1123 257 130 11 chr11 88181975 88182430 -60601042 + L1ME3A LINE L1 5660 6168 -2 25 83 0 0 chr11 88182437 88182497 -60600975 + AT_rich Low_complexity Low_complexity 1 60 0 1603 163 21 17 chr11 88183596 88183884 -60599588 - AluJb SINE Alu -23 289 1 2155 116 36 0 chr11 88184029 88184330 -60599142 - AluSx SINE Alu 0 312 1 22 0 0 0 chr11 88185860 88185882 -60597590 + AT_rich Low_complexity Low_complexity 1 22 0 439 189 306 51 chr11 88186448 88186644 -60596828 + MIR SINE MIR 17 262 0 326 226 373 17 chr11 88187074 88187251 -60596221 - MIR SINE MIR -11 251 12 1010 242 160 5 chr11 88187444 88187870 -60595602 + MLT1J LTR MaLR 1 492 -19 394 317 128 0 chr11 88188073 88188237 -60595235 + MIR SINE MIR 19 203 -59 28 29 0 0 chr11 88188338 88188373 -60595099 + AT_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr11 88188653 88188680 -60594792 + AT_rich Low_complexity Low_complexity 1 27 0 887 207 12 18 chr11 88189266 88189435 -60594037 - FAM SINE Alu -7 168 1 315 311 121 8 chr11 88189817 88189949 -60593523 + L2 LINE L2 3167 3313 0 2017 74 86 0 chr11 88190716 88190973 -60592499 - AluSx SINE Alu -33 279 1 25 65 0 0 chr11 88191989 88192035 -60591437 + AT_rich Low_complexity Low_complexity 1 46 0 346 282 243 44 chr11 88192519 88192700 -60590772 - MIR SINE MIR -26 236 20 256 239 0 56 chr11 88193072 88193143 -60590329 + MIR SINE MIR 196 262 0 313 291 34 38 chr11 88193707 88193870 -60589602 + L1ME LINE L1 5660 5819 -345 1711 35 31 4 chr11 88194076 88194303 -60589169 - L1P LINE L1 -4273 1873 1641 * 3353 17 2 0 chr11 88194302 88194705 -60588767 + L1PA3 LINE L1 5730 6133 -22 25 31 0 0 chr11 88195257 88195289 -60588183 + AT_rich Low_complexity Low_complexity 1 32 0 35572 77 21 15 chr11 88195745 88201860 -60581612 + L1PA6 LINE L1 11 6149 -5 629 240 91 49 chr11 88202480 88202739 -60580733 + MIR SINE MIR 4 262 0 668 105 175 9 chr11 88202860 88202974 -60580498 - FLAM_C SINE Alu 0 133 1 26 64 0 0 chr11 88203792 88203839 -60579633 + AT_rich Low_complexity Low_complexity 1 47 0 21 36 0 0 chr11 88204206 88204234 -60579238 + AT_rich Low_complexity Low_complexity 1 28 0 1309 132 82 9 chr11 88204975 88205195 -60578277 + MER46A DNA MER2_type 1 236 0 956 202 82 39 chr11 88205326 88205559 -60577913 + MIR SINE MIR 20 262 0 1980 141 0 7 chr11 88205962 88206246 -60577226 - AluSx SINE Alu -25 287 6 1988 122 13 42 chr11 88207085 88207397 -60576075 - AluSx SINE Alu -9 303 1 245 321 137 0 chr11 88207710 88207841 -60575631 + MIR SINE MIR 95 243 -19 2432 81 7 0 chr11 88208603 88208912 -60574560 + AluY SINE Alu 1 311 0 242 317 35 55 chr11 88208946 88209148 -60574324 - L1ME LINE L1 -608 5513 5316 302 313 260 0 chr11 88209169 88209469 -60574003 - L1ME LINE L1 -1127 5019 4642 425 212 75 14 chr11 88209501 88209647 -60573825 - L1ME4a LINE L1 -199 5922 5768 199 303 132 0 chr11 88209955 88210031 -60573441 + MIR SINE MIR 57 142 -66 461 238 130 22 chr11 88210260 88210491 -60572981 + L2 LINE L2 3058 3313 0 283 276 122 10 chr11 88210686 88210784 -60572688 - MIR3 SINE MIR -94 114 6 244 379 0 29 chr11 88210918 88211021 -60572451 - L2 LINE L2 -39 3233 3134 24 0 0 0 chr11 88211394 88211418 -60572054 + AT_rich Low_complexity Low_complexity 1 24 0 215 156 67 22 chr11 88211449 88211494 -60571978 - MIR SINE MIR -115 147 101 1411 137 0 0 chr11 88211496 88211715 -60571757 - Tigger5 DNA MER2_type -2 2321 2103 1210 185 130 4 chr11 88211722 88211992 -60571480 - Tigger5 DNA MER2_type -2019 304 1 668 290 102 78 chr11 88212073 88212468 -60571004 + L2 LINE L2 2744 3162 -110 805 184 85 81 chr11 88212468 88212691 -60570781 + MER58A DNA MER1_type 1 224 0 668 290 102 78 chr11 88212691 88212800 -60570672 + L2 LINE L2 3162 3267 -5 212 283 0 33 chr11 88212787 88212847 -60570625 - L2 LINE L2 -31 3241 3184 * 1805 171 13 0 chr11 88213283 88213581 -60569891 + AluJb SINE Alu 1 302 -10 2340 94 3 0 chr11 88216570 88216868 -60566604 + AluSx SINE Alu 1 299 -13 2107 153 24 22 chr11 88216930 88217343 -60566129 - L1PA16 LINE L1 -78 6088 5675 198 0 0 0 chr11 88217343 88217365 -60566107 + (T)n Simple_repeat Simple_repeat 1 22 0 1879 155 16 0 chr11 88217496 88217800 -60565672 - AluJo SINE Alu -3 309 1 5539 175 25 6 chr11 88217801 88219412 -60564060 - L1PA16 LINE L1 -481 5685 4047 439 265 82 32 chr11 88219419 88219475 -60563997 + L1ME4a LINE L1 5570 5622 -499 2296 110 0 13 chr11 88219475 88219783 -60563689 - AluSx SINE Alu -8 304 1 439 265 82 32 chr11 88219783 88220005 -60563467 + L1ME4a LINE L1 5622 5862 -259 186 300 0 0 chr11 88220093 88220143 -60563329 - L2 LINE L2 -87 3185 3136 21 0 0 0 chr11 88220553 88220574 -60562898 + AT_rich Low_complexity Low_complexity 1 21 0 303 253 36 0 chr11 88220595 88220678 -60562794 + MIR SINE MIR 163 248 -14 1706 209 60 18 chr11 88220703 88221138 -60562334 + LTR40b LTR ERVL 2 454 -8 450 285 142 81 chr11 88221591 88221935 -60561537 + L2 LINE L2 2908 3272 0 415 325 148 33 chr11 88223251 88223742 -60559730 - L2 LINE L2 0 3272 2721 1786 159 19 7 chr11 88223757 88224065 -60559407 + AluJo SINE Alu 1 312 0 459 326 34 0 chr11 88224485 88224632 -60558840 - MIR SINE MIR -57 205 54 484 324 28 0 chr11 88224769 88224945 -60558527 + MER117 DNA MER1_type 1 181 -16 360 243 314 24 chr11 88225089 88225258 -60558214 - MIR SINE MIR 0 262 45 2640 202 16 5 chr11 88225661 88226215 -60557257 - L1MB5 LINE L1 -16 6158 5599 490 298 91 25 chr11 88226427 88226638 -60556834 - MIR SINE MIR -29 233 10 211 175 88 18 chr11 88228990 88229047 -60554425 - MIR SINE MIR -19 243 183 1013 224 75 0 chr11 88229784 88230025 -60553447 + MIR SINE MIR 4 262 0 320 403 34 17 chr11 88231635 88231811 -60551661 + L2 LINE L2 3072 3250 -22 286 288 50 25 chr11 88231913 88232073 -60551399 - LTR67 LTR ERVL -4 553 390 286 282 145 16 chr11 88232435 88232559 -60550913 - L2 LINE L2 0 3272 3133 309 276 20 31 chr11 88232733 88232831 -60550641 - L3 LINE CR1 -7 1570 1474 733 225 155 54 chr11 88233688 88234123 -60549349 - LTR33 LTR ERVL 0 521 3 2485 158 88 6 chr11 88234674 88235141 -60548331 + MLT1D LTR MaLR 1 505 0 658 256 106 11 chr11 88235142 88235178 -60548294 - MIR SINE MIR -57 205 174 1646 102 109 8 chr11 88235178 88235444 -60548028 - AluSx SINE Alu -19 293 1 658 256 106 11 chr11 88235444 88235587 -60547885 - MIR SINE MIR -88 174 9 533 280 83 6 chr11 88235781 88235949 -60547523 + MIR SINE MIR 57 237 -25 823 295 34 23 chr11 88236977 88237330 -60546142 - L1MC4a LINE L1 -1908 5900 5544 1376 158 17 0 chr11 88237533 88237767 -60545705 - Tigger1 DNA MER2_type -1342 1076 839 14831 112 62 19 chr11 88237797 88238122 -60545350 - Tigger1 DNA MER2_type 0 2418 2108 1338 194 59 11 chr11 88238122 88238542 -60544930 + AluJo SINE Alu 1 433 0 14831 112 62 19 chr11 88238542 88238846 -60544626 - Tigger1 DNA MER2_type -310 2108 1819 1747 151 43 0 chr11 88238846 88239124 -60544348 - AluJb SINE Alu -22 290 1 14831 112 62 19 chr11 88239124 88239505 -60543967 - Tigger1 DNA MER2_type -599 1819 1456 1929 138 0 14 chr11 88239505 88239796 -60543676 - AluSx SINE Alu -25 287 1 14831 112 62 19 chr11 88239796 88241099 -60542373 - Tigger1 DNA MER2_type -962 1456 1 189 225 84 70 chr11 88241989 88242060 -60541412 - L2 LINE L2 0 3313 3242 331 291 0 13 chr11 88242394 88242473 -60540999 + MIR SINE MIR 46 123 -85 207 161 0 0 chr11 88242985 88243016 -60540456 + MIR SINE MIR 73 103 -159 452 281 88 10 chr11 88243745 88243905 -60539567 - MIR SINE MIR -27 235 56 2175 105 7 0 chr11 88243905 88244200 -60539272 + AluSg SINE Alu 1 297 -13 452 281 88 10 chr11 88244200 88244231 -60539241 - MIR SINE MIR -206 56 29 252 290 43 21 chr11 88244448 88244541 -60538931 - MIR SINE MIR -86 176 82 487 209 0 0 chr11 88244560 88244651 -60538821 - MER5A DNA MER1_type -92 97 7 2399 78 0 0 chr11 88244704 88245013 -60538459 + AluY SINE Alu 1 309 -2 1823 148 0 16 chr11 88245041 88245372 -60538100 - AluSx SINE Alu 0 312 1 3360 13 29 0 chr11 88245376 88245757 -60537715 - SVA Other Other -3 1383 992 200 256 107 50 chr11 88246095 88246216 -60537256 - L2 LINE L2 -1333 1981 1854 283 289 49 142 chr11 88248444 88248648 -60534824 - MIR SINE MIR -1 261 77 557 241 79 69 chr11 88248648 88248991 -60534481 - LTR15 LTR ERV1 0 596 150 248 327 93 60 chr11 88249263 88249413 -60534059 + L2 LINE L2 3102 3256 -16 240 254 16 16 chr11 88249481 88249544 -60533928 - MIR3 SINE MIR -26 182 120 2158 108 0 0 chr11 88249548 88249843 -60533629 + AluSq SINE Alu 7 301 -12 297 287 233 30 chr11 88249871 88250073 -60533399 - MIR SINE MIR -7 255 13 1839 133 26 42 chr11 88250284 88250593 -60532879 + AluSx SINE Alu 3 306 -6 265 266 109 0 chr11 88250593 88250657 -60532815 - L2 LINE L2 -9 3263 3193 6883 59 19 10 chr11 88250995 88252608 -60530864 + L1PA8 LINE L1 4557 6180 0 22 0 0 0 chr11 88252875 88252897 -60530575 + AT_rich Low_complexity Low_complexity 1 22 0 263 292 62 29 chr11 88253980 88254223 -60529249 + L1ME3A LINE L1 5681 5931 -239 630 265 123 45 chr11 88254470 88254802 -60528670 + MLT1G1 LTR MaLR 238 595 0 1504 250 102 18 chr11 88255268 88255720 -60527752 + L1MCb LINE L1 1 490 -5555 23 0 0 0 chr11 88255832 88255855 -60527617 + AT_rich Low_complexity Low_complexity 1 23 0 261 0 0 0 chr11 88259295 88259324 -60524148 + (GGGTG)n Simple_repeat Simple_repeat 3 31 0 247 184 13 53 chr11 88259378 88259454 -60524018 + (CGGGG)n Simple_repeat Simple_repeat 2 74 0 26 64 0 0 chr11 88263464 88263511 -60519961 + AT_rich Low_complexity Low_complexity 1 47 0 23 0 0 0 chr11 88265829 88265852 -60517620 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr11 88275345 88275366 -60508106 + AT_rich Low_complexity Low_complexity 1 21 0 402 233 169 35 chr11 88276669 88276841 -60506631 - MIR SINE MIR -66 196 2 272 318 155 0 chr11 88277716 88277845 -60505627 - L2 LINE L2 -2 3311 3163 1168 150 50 5 chr11 88277930 88278150 -60505322 - L1MA4A LINE L1 -8 6997 6768 6437 110 29 7 chr11 88278169 88279167 -60504305 - L1MA3 LINE L1 0 6305 5286 14302 170 28 32 chr11 88279181 88283139 -60500333 - L1MA4A LINE L1 -244 6761 2831 5653 204 128 20 chr11 88283139 88284880 -60498592 - L1MA4A LINE L1 -4705 2144 1 523 329 156 12 chr11 88285234 88285651 -60497821 - L2 LINE L2 -443 2871 2395 2825 151 7 2 chr11 88285658 88286070 -60497402 + MLT2D LTR ERVL 1 414 0 497 231 1 47 chr11 88286110 88286205 -60497267 + L1MA5 LINE L1 5836 5926 -379 2219 135 35 24 chr11 88286205 88286576 -60496896 + THE1C LTR MaLR 1 375 0 497 231 1 47 chr11 88286576 88286599 -60496873 + L1MA5 LINE L1 5926 5949 -356 198 0 0 0 chr11 88286797 88286819 -60496653 + (A)n Simple_repeat Simple_repeat 1 22 0 357 229 9 9 chr11 88286830 88286939 -60496533 + L1MA5 LINE L1 5946 6054 -246 1654 113 47 8 chr11 88287925 88288182 -60495290 + L1MA5 LINE L1 6034 6300 0 269 298 33 2 chr11 88288710 88288897 -60494575 + MIR SINE MIR 20 262 0 238 391 73 7 chr11 88289383 88289534 -60493938 + L2 LINE L2 3112 3272 0 391 274 33 13 chr11 88290433 88290586 -60492886 - L1ME3A LINE L1 -234 5936 5781 2233 112 0 0 chr11 88290599 88290894 -60492578 - AluSc SINE Alu -14 295 1 1044 246 56 18 chr11 88290897 88291182 -60492290 - MER46C DNA MER2_type -3 335 40 231 279 0 23 chr11 88291210 88291296 -60492176 - L1ME3A LINE L1 -393 5771 5688 298 194 259 9 chr11 88291299 88291407 -60492065 + L2 LINE L2 3138 3272 0 1576 226 41 11 chr11 88292247 88292610 -60490862 + MLT2D LTR ERVL 1 374 -40 223 298 0 0 chr11 88292610 88292667 -60490805 + (TA)n Simple_repeat Simple_repeat 1 57 0 229 100 125 0 chr11 88292667 88292707 -60490765 + MLT2D LTR ERVL 369 413 -1 425 274 48 14 chr11 88294272 88294418 -60489054 + MIR SINE MIR 64 214 -48 2325 150 49 84 chr11 88295613 88296521 -60486951 + L1MA3 LINE L1 5215 6046 -259 * 3174 155 30 15 chr11 88296134 88296664 -60486808 + L1PA16 LINE L1 5626 6163 -3 631 192 72 8 chr11 88296667 88296792 -60486680 + MER39 LTR ERV1 1 133 -574 1156 201 146 36 chr11 88296798 88297127 -60486345 + MER39 LTR ERV1 340 704 -3 1509 71 9 28 chr11 88298069 88298280 -60485192 - L1PA14 LINE L1 -1 6160 5954 210 71 0 0 chr11 88299130 88299158 -60484314 + (T)n Simple_repeat Simple_repeat 1 28 0 479 122 11 56 chr11 88299270 88299360 -60484112 + HERVH LTR ERV1 7628 7713 0 2855 76 108 7 chr11 88299360 88299767 -60483705 + LTR7 LTR ERV1 1 448 -2 2545 78 0 0 chr11 88300387 88300696 -60482776 + AluY SINE Alu 1 309 -2 4277 97 8 0 chr11 88300839 88301428 -60482044 + HERVH LTR ERV1 1811 2404 -5309 1409 130 19 0 chr11 88301454 88301670 -60481802 + HERVH LTR ERV1 5600 5819 -1894 1116 109 86 0 chr11 88301668 88301842 -60481630 + HERVH LTR ERV1 7322 7510 -203 * 5229 110 17 4 chr11 88301942 88302721 -60480751 - HERVH LTR ERV1 -6132 1581 793 2985 100 0 47 chr11 88302796 88303264 -60480208 - HERVH LTR ERV1 -7267 446 1 2787 79 145 3 chr11 88303266 88303658 -60479814 - LTR7 LTR ERV1 -2 448 1 1676 181 29 47 chr11 88303774 88304153 -60479319 - MER63B DNA MER1_type -39 397 26 397 58 0 0 chr11 88304153 88304205 -60479267 - MADE1 DNA Mariner 0 80 29 638 300 105 47 chr11 88304283 88304626 -60478846 - LTR33 LTR ERVL -154 367 5 228 214 0 0 chr11 88304636 88304678 -60478794 + L2 LINE L2 3216 3257 -15 24 32 0 0 chr11 88304691 88304722 -60478750 + AT_rich Low_complexity Low_complexity 1 31 0 1692 188 113 33 chr11 88304813 88305238 -60478234 - LTR2B LTR ERV1 0 490 32 1704 266 71 25 chr11 88305396 88305957 -60477515 - L1MEc LINE L1 -5702 694 108 1093 194 86 4 chr11 88306080 88306312 -60477160 + MLT1A1 LTR MaLR 112 362 -3 304 258 58 8 chr11 88307010 88307130 -60476342 + L1ME4a LINE L1 5678 5803 -318 727 149 114 0 chr11 88308841 88308955 -60474517 - AluSg/x SINE Alu -21 288 162 347 185 120 65 chr11 88308965 88309073 -60474399 + L1ME4a LINE L1 5803 5916 -205 309 136 0 0 chr11 88309924 88309968 -60473504 + L1MB7 LINE L1 5598 5641 -533 1680 174 44 44 chr11 88310004 88310333 -60473139 + L1MB7 LINE L1 5799 6130 -54 2427 52 17 7 chr11 88310333 88310624 -60472848 + AluY SINE Alu 1 294 -17 1680 174 44 44 chr11 88310624 88310655 -60472817 + L1MB7 LINE L1 6129 6159 -25 1331 125 39 5 chr11 88310903 88311111 -60472361 + MSTB LTR MaLR 212 426 0 280 316 143 8 chr11 88312337 88312470 -60471002 + L2 LINE L2 3158 3308 -5 561 338 65 43 chr11 88312867 88313377 -60470095 + L2 LINE L2 2746 3272 0 216 278 0 0 chr11 88313468 88313522 -60469950 + L3 LINE CR1 1523 1576 -1 513 253 48 75 chr11 88313951 88314137 -60469335 - MIR SINE MIR -70 192 12 358 292 99 18 chr11 88314414 88314585 -60468887 - MIR SINE MIR -66 196 12 462 266 91 19 chr11 88314723 88314771 -60468701 - MIR SINE MIR -78 184 141 2085 128 0 3 chr11 88314771 88315069 -60468403 + AluSg SINE Alu 10 306 -4 462 266 91 19 chr11 88315069 88315174 -60468298 - MIR SINE MIR -121 141 20 437 282 32 26 chr11 88315345 88315501 -60467971 - MLT1J LTR MaLR -43 468 312 764 270 36 36 chr11 88316005 88316253 -60467219 + MIR SINE MIR 7 254 -8 448 335 51 0 chr11 88316273 88316431 -60467041 - MIR SINE MIR -79 183 18 2290 82 4 0 chr11 88316861 88317165 -60466307 - AluY SINE Alu 0 305 1 774 77 0 0 chr11 88317433 88317537 -60465935 + AluY SINE Alu 206 309 -2 284 322 0 33 chr11 88317563 88317684 -60465788 + MIR3 SINE MIR 92 208 0 329 336 8 37 chr11 88318000 88318134 -60465338 + MIR SINE MIR 28 157 -105 2293 140 68 0 chr11 88318317 88318668 -60464804 + THE1C LTR MaLR 1 375 0 24 0 0 0 chr11 88318866 88318890 -60464582 + AT_rich Low_complexity Low_complexity 1 24 0 2433 103 0 0 chr11 88319195 88319542 -60463930 - AluSx SINE Alu 0 348 2 2252 91 0 31 chr11 88319558 88319878 -60463594 - AluY SINE Alu -1 310 1 986 164 6 175 chr11 88320034 88320394 -60463078 - MER101B LTR ERV1 -271 299 1 353 309 191 7 chr11 88320406 88320558 -60462914 - L2 LINE L2 -206 3066 2887 21 36 0 0 chr11 88320621 88320649 -60462823 + AT_rich Low_complexity Low_complexity 1 28 0 452 272 133 12 chr11 88320925 88321098 -60462374 + MIR SINE MIR 14 207 -55 27 29 0 0 chr11 88321122 88321156 -60462316 + AT_rich Low_complexity Low_complexity 1 34 0 264 278 52 53 chr11 88321827 88321996 -60461476 - MIR SINE MIR -66 142 14 503 261 156 11 chr11 88322212 88322392 -60461080 - L2 LINE L2 -4 3309 3104 1435 171 198 41 chr11 88322449 88322626 -60460846 + MLT2B1 LTR ERVL 1 149 -371 189 0 0 0 chr11 88322626 88322647 -60460825 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1435 171 198 41 chr11 88322647 88322832 -60460640 + MLT2B1 LTR ERVL 149 420 -100 5367 151 15 35 chr11 88322866 88323591 -60459881 - MER4D LTR ERV1 0 903 165 300 27 0 0 chr11 88323591 88323628 -60459844 + (TG)n Simple_repeat Simple_repeat 2 38 0 1743 121 0 115 chr11 88323628 88323950 -60459522 - AluSg1 SINE Alu -24 285 1 5367 151 15 35 chr11 88323950 88324144 -60459328 - MER4D LTR ERV1 -736 167 1 1884 141 40 37 chr11 88324215 88324514 -60458958 - AluSx SINE Alu -12 300 1 783 173 0 24 chr11 88324560 88324687 -60458785 + FLAM_C SINE Alu 2 125 -18 257 316 0 13 chr11 88324782 88324861 -60458611 + MER116 DNA Mariner 2 79 -1 229 227 213 27 chr11 88324968 88325118 -60458354 - L1M1 LINE L1 -444 5861 5684 1801 146 49 3 chr11 88325189 88325477 -60457995 - MER34C LTR ERV1 -284 301 1 259 285 25 19 chr11 88325501 88325611 -60457861 - L1MC/D LINE L1 -626 6038 5942 1355 212 153 53 chr11 88325645 88326136 -60457336 + LTR10B LTR ERV1 1 540 -7 319 279 73 15 chr11 88326271 88326407 -60457065 - L1MC/D LINE L1 -878 5766 5623 235 164 91 36 chr11 88326454 88326509 -60456963 - LTR48B LTR ERV1 -45 599 542 435 257 110 59 chr11 88326946 88327183 -60456289 - L1MC/D LINE L1 -4833 1709 1461 1739 138 45 23 chr11 88327200 88327538 -60455934 - MER4A LTR ERV1 0 664 261 582 162 0 10 chr11 88327538 88327637 -60455835 - MER4A LTR ERV1 -566 98 1 306 86 0 69 chr11 88327665 88327723 -60455749 - AluJo SINE Alu -166 136 85 2257 228 6 7 chr11 88327723 88328477 -60454995 - L1MC/D LINE L1 -692 5667 4915 2114 103 3 40 chr11 88328477 88328798 -60454674 - AluY SINE Alu -2 309 1 3311 136 74 27 chr11 88328812 88328887 -60454585 - L1MC3 LINE L1 -8 7777 7707 1666 163 72 0 chr11 88328887 88329163 -60454309 - AluSx SINE Alu -14 298 3 3311 136 74 27 chr11 88329163 88329719 -60453753 - L1MC3 LINE L1 -78 7707 7116 1349 225 62 0 chr11 88329723 88329999 -60453473 - AluJb SINE Alu -19 293 1 834 277 82 23 chr11 88330000 88330514 -60452958 - L1MEc LINE L1 -5053 1185 660 730 331 37 15 chr11 88330849 88331251 -60452221 - L1MEc LINE L1 -5977 419 9 * 2904 193 71 42 chr11 88331246 88331748 -60451724 - L1MC4a LINE L1 0 7808 7275 886 163 8 0 chr11 88331748 88331877 -60451595 + FLAM_C SINE Alu 1 130 -3 2904 193 71 42 chr11 88331877 88332116 -60451356 - L1MC4a LINE L1 -533 7275 7045 227 186 0 0 chr11 88332116 88332159 -60451313 - Alu SINE Alu -2 318 276 1209 119 50 10 chr11 88332224 88332425 -60451047 - L1MA3 LINE L1 0 6305 6097 8279 154 21 5 chr11 88332463 88334599 -60448873 - L1MA3 LINE L1 -381 5923 3747 489 208 0 28 chr11 88334629 88334735 -60448737 + L1 LINE L1 2986 3088 -3058 2234 111 3 0 chr11 88334735 88335032 -60448440 + AluSx SINE Alu 1 298 -14 876 160 0 0 chr11 88335290 88335421 -60448051 + FLAM_C SINE Alu 3 133 -10 477 309 48 39 chr11 88335452 88335682 -60447790 - L1MC/D LINE L1 -2128 5680 5449 807 171 0 0 chr11 88336440 88336563 -60446909 - FLAM_C SINE Alu -9 124 2 2100 170 54 5 chr11 88336590 88336961 -60446511 - MLT1B LTR MaLR -1 389 1 324 339 0 9 chr11 88336976 88337085 -60446387 - MIR SINE MIR -120 142 35 440 213 56 120 chr11 88337211 88337427 -60446045 - LTR67 LTR ERVL 0 557 356 278 260 67 19 chr11 88337481 88337585 -60445887 - LTR67 LTR ERVL -336 221 113 2382 164 3 8 chr11 88338276 88338643 -60444829 + MLT1A1 LTR MaLR 1 365 0 235 346 0 48 chr11 88338834 88338938 -60444534 + MIR3 SINE MIR 104 202 -6 21 0 0 0 chr11 88339000 88339021 -60444451 + AT_rich Low_complexity Low_complexity 1 21 0 262 326 99 23 chr11 88339525 88339653 -60443819 + MIR SINE MIR 30 171 -56 475 265 73 0 chr11 88340412 88340548 -60442924 + MIR SINE MIR 61 206 -56 388 261 43 26 chr11 88340622 88340737 -60442735 + MIR SINE MIR 5 121 -141 21066 131 15 86 chr11 88340780 88345003 -60438469 + L1P LINE L1 12 3938 -2208 1210 144 0 25 chr11 88345310 88345512 -60437960 + L1M2 LINE L1 2385 2581 -4268 651 196 133 0 chr11 88345513 88345753 -60437719 + L1M2 LINE L1 3741 4012 -2836 2205 126 3 16 chr11 88345754 88346071 -60437401 + AluSq SINE Alu 1 313 0 688 165 0 38 chr11 88346576 88346786 -60436686 + MER61B LTR ERV1 190 434 0 468 339 22 22 chr11 88347391 88347526 -60435946 + MIR SINE MIR 7 144 -118 2784 169 66 79 chr11 88347526 88348224 -60435248 - LTR8 LTR ERV1 0 691 3 468 339 22 22 chr11 88348224 88348271 -60435201 + MIR SINE MIR 143 189 -73 2488 108 123 43 chr11 88348284 88348699 -60434773 - LTR7 LTR ERV1 -2 448 1 509 51 25 63 chr11 88348699 88348778 -60434694 - HERVH LTR ERV1 0 7713 7638 * 2098 142 1 5 chr11 88348776 88349103 -60434369 - HERVH LTR ERV1 -3405 4308 3994 2594 100 8 11 chr11 88349114 88349494 -60433978 - HERVH LTR ERV1 -3978 3735 3357 12719 102 24 24 chr11 88349494 88351431 -60432041 - HERVH LTR ERV1 -4883 2830 894 547 170 27 45 chr11 88351406 88351518 -60431954 - HERVH LTR ERV1 -7603 110 1 * 3259 86 2 24 chr11 88351521 88351977 -60431495 - LTR7 LTR ERV1 -2 448 3 1829 102 0 4 chr11 88351978 88352223 -60431249 + PABL_B LTR ERV1 424 667 0 238 218 308 0 chr11 88352317 88352450 -60431022 - L2 LINE L2 -1612 1702 1529 34 0 0 22 chr11 88353022 88353039 -60430433 + AT_rich Low_complexity Low_complexity 1 17 -27 1702 113 4 9 chr11 88353039 88353268 -60430204 + AluSq SINE Alu 1 228 -85 34 0 0 22 chr11 88353268 88353295 -60430177 + AT_rich Low_complexity Low_complexity 17 44 0 484 114 29 0 chr11 88354013 88354083 -60429389 - AluS SINE Alu -17 294 223 1657 71 0 0 chr11 88354314 88354510 -60428962 - AluSx SINE Alu -116 196 1 2125 122 10 0 chr11 88355449 88355743 -60427729 - AluSg SINE Alu -13 297 1 5555 183 89 47 chr11 88355798 88356498 -60426974 + L1MC3 LINE L1 6427 7096 -689 2232 124 23 52 chr11 88356498 88356884 -60426588 - THE1C LTR MaLR 0 375 1 5555 183 89 47 chr11 88356884 88357486 -60425986 + L1MC3 LINE L1 7096 7784 -1 1980 116 19 5 chr11 88357586 88357940 -60425532 - LTR7 LTR ERV1 -2 448 1 2375 101 53 13 chr11 88357940 88358317 -60425155 - HERVH LTR ERV1 0 7713 7322 1398 139 19 0 chr11 88358315 88358531 -60424941 - HERVH LTR ERV1 -1894 5819 5600 * 25963 137 60 42 chr11 88358532 88363587 -60419885 - HERVH LTR ERV1 -2564 5149 1 2076 114 250 6 chr11 88363589 88363949 -60419523 - LTR7 LTR ERV1 -2 448 1 288 299 82 30 chr11 88364405 88364539 -60418933 + MIR3 SINE MIR 10 150 -58 2178 136 0 0 chr11 88364539 88364849 -60418623 + AluSx SINE Alu 1 310 -2 463 314 27 53 chr11 88364973 88365161 -60418311 - MIR SINE MIR -79 183 1 453 238 196 0 chr11 88365505 88365648 -60417824 - MER5A DNA MER1_type -10 179 9 1379 151 23 0 chr11 88367390 88367608 -60415864 - AluSg/x SINE Alu -12 300 78 2343 96 3 0 chr11 88367623 88367924 -60415548 - AluSp SINE Alu -11 302 1 22 56 0 0 chr11 88370427 88370463 -60413009 + AT_rich Low_complexity Low_complexity 1 36 0 289 319 15 26 chr11 88371880 88372129 -60411343 + GA-rich Low_complexity Low_complexity 1 246 0 3751 177 81 3 chr11 88372768 88373542 -60409930 + L1 LINE L1 3257 4091 -2055 2242 129 16 19 chr11 88373567 88373938 -60409534 + L1MA6 LINE L1 5931 6300 0 874 294 58 22 chr11 88374734 88375110 -60408362 + MER115 DNA AcHobo 1 434 -259 539 147 69 1 chr11 88375144 88375257 -60408215 - L1ME LINE L1 -376 5793 5672 1463 203 70 6 chr11 88375422 88375752 -60407720 - L1MB5 LINE L1 0 6174 5824 1871 184 36 22 chr11 88375775 88376139 -60407333 + MLT1A2 LTR MaLR 6 374 0 391 221 26 0 chr11 88376198 88376275 -60407197 - L1MC1 LINE L1 -6 6327 6249 2813 162 34 12 chr11 88376275 88376775 -60406697 - L1MB5 LINE L1 -357 5827 5317 2536 144 0 3 chr11 88376921 88377304 -60406168 - L1MB3 LINE L1 -7 6176 5795 327 335 141 22 chr11 88377888 88378115 -60405357 + MIR SINE MIR 6 259 -3 247 269 60 8 chr11 88379096 88379230 -60404242 + L1 LINE L1 2481 2621 -3525 1195 162 20 15 chr11 88379257 88379461 -60404011 - MER58A DNA MER1_type -8 216 12 23 0 0 0 chr11 88379581 88379604 -60403868 + AT_rich Low_complexity Low_complexity 1 23 0 8363 16 0 0 chr11 88379605 88380694 -60402778 - L1PA2 LINE L1 -1 6154 5066 12938 29 1 0 chr11 88380694 88382226 -60401246 + L1P LINE L1 2516 4048 -2098 288 316 43 11 chr11 88382248 88382435 -60401037 + L1 LINE L1 2635 2827 -3319 1851 170 3 3 chr11 88382446 88382758 -60400714 - AluJo SINE Alu 0 312 1 1498 113 45 0 chr11 88382824 88383046 -60400426 - L1MA5A LINE L1 -1 6296 6065 22 0 0 0 chr11 88383206 88383228 -60400244 + AT_rich Low_complexity Low_complexity 1 22 0 915 279 129 0 chr11 88383381 88383653 -60399819 - AluSx SINE Alu -3 309 3 265 274 60 48 chr11 88383654 88383822 -60399650 - L1M4 LINE L1 -934 5212 5043 251 275 9 9 chr11 88383844 88383953 -60399519 + (TA)n Simple_repeat Simple_repeat 1 109 0 23 78 0 0 chr11 88384158 88384209 -60399263 + AT_rich Low_complexity Low_complexity 1 51 0 49 0 0 0 chr11 88384537 88384586 -60398886 + AT_rich Low_complexity Low_complexity 1 49 0 1517 196 7 7 chr11 88384586 88384856 -60398616 - AluJo SINE Alu -42 270 1 269 34 0 85 chr11 88385022 88385081 -60398391 + (TTTTTA)n Simple_repeat Simple_repeat 2 55 0 522 289 36 122 chr11 88385227 88385298 -60398174 - L2 LINE L2 -12 3260 3185 1631 189 0 20 chr11 88385298 88385600 -60397872 + AluJb SINE Alu 1 296 -16 522 289 36 122 chr11 88385600 88385857 -60397615 - L2 LINE L2 -87 3185 2960 34 24 0 0 chr11 88385912 88385953 -60397519 + AT_rich Low_complexity Low_complexity 1 41 0 2187 110 10 13 chr11 88386090 88386389 -60397083 - AluSx SINE Alu -14 298 1 261 291 197 8 chr11 88386420 88386537 -60396935 + L2 LINE L2 3134 3272 0 222 224 0 0 chr11 88386866 88386915 -60396557 - L2 LINE L2 0 3313 3265 1828 196 62 68 chr11 88387051 88387414 -60396058 + L1MC5 LINE L1 7293 7652 -309 2209 98 11 0 chr11 88387414 88387701 -60395771 + AluSg SINE Alu 2 291 -19 1828 196 62 68 chr11 88387701 88387986 -60395486 + L1MC5 LINE L1 7652 7937 -24 439 236 0 19 chr11 88388386 88388492 -60394980 - FLAM_A SINE Alu -8 134 31 363 44 0 0 chr11 88388515 88388560 -60394912 + (TG)n Simple_repeat Simple_repeat 2 46 0 255 329 0 12 chr11 88388628 88388713 -60394759 - MIR3 SINE MIR -34 174 91 189 330 104 0 chr11 88389691 88389797 -60393675 + MIR3 SINE MIR 81 197 -11 1914 148 47 22 chr11 88389846 88390210 -60393262 + THE1C LTR MaLR 3 375 0 260 323 50 25 chr11 88390211 88390372 -60393100 - MIR SINE MIR -62 200 36 195 286 18 0 chr11 88390450 88390506 -60392966 - L2 LINE L2 -19 3253 3197 267 233 22 63 chr11 88390633 88390754 -60392718 - MIR SINE MIR -46 216 104 2330 103 0 16 chr11 88390757 88391069 -60392403 + AluSx SINE Alu 1 307 -5 298 175 250 0 chr11 88391665 88391745 -60391727 - L2 LINE L2 -12 3301 3202 474 278 23 6 chr11 88391762 88391935 -60391537 - MIR SINE MIR 0 262 87 1314 184 109 8 chr11 88391945 88392201 -60391271 - AluJo SINE Alu -30 282 1 315 230 26 71 chr11 88392351 88392464 -60391008 - MIR SINE MIR -76 186 79 2290 115 0 3 chr11 88392698 88393010 -60390462 - AluSx SINE Alu -1 311 1 256 237 76 76 chr11 88393338 88393456 -60390016 - MIR3 SINE MIR -21 187 70 282 293 78 9 chr11 88393487 88393603 -60389869 - MIR3 SINE MIR -51 157 34 311 315 123 25 chr11 88393870 88394032 -60389440 - LTR16C LTR ERVL -234 257 80 22 0 0 0 chr11 88394870 88394892 -60388580 + AT_rich Low_complexity Low_complexity 1 22 0 201 276 0 0 chr11 88395221 88395279 -60388193 + MIR3 SINE MIR 110 167 -41 255 164 49 16 chr11 88395389 88395450 -60388022 + MIR SINE MIR 90 152 -110 635 236 81 11 chr11 88396910 88397084 -60386388 - MLT1J LTR MaLR -317 194 9 206 250 197 0 chr11 88397274 88397350 -60386122 - L2 LINE L2 0 3313 3223 24335 81 16 1 chr11 88397976 88402110 -60381362 - L1PA7 LINE L1 -1 6153 1962 5244 141 5 1 chr11 88402111 88402901 -60380571 + L1PA15 LINE L1 5373 6165 0 587 191 36 83 chr11 88402989 88403323 -60380149 + L1MC5 LINE L1 6845 7220 -741 2675 88 97 7 chr11 88404088 88404499 -60378973 + LTR7 LTR ERV1 1 448 -2 16801 128 34 22 chr11 88404501 88407300 -60376172 + HERVH LTR ERV1 1 2830 -4883 2601 100 8 11 chr11 88407300 88407680 -60375792 + HERVH LTR ERV1 3357 3735 -3978 2100 142 1 5 chr11 88407691 88408018 -60375454 + HERVH LTR ERV1 3994 4308 -3405 505 51 25 63 chr11 88408016 88408095 -60375377 + HERVH LTR ERV1 7638 7713 0 * 2336 108 123 43 chr11 88408095 88408510 -60374962 + LTR7 LTR ERV1 1 448 -2 420 339 22 22 chr11 88408523 88408570 -60374902 - MIR SINE MIR -73 189 143 2615 174 52 78 chr11 88408570 88409277 -60374195 + LTR8 LTR ERV1 3 691 0 420 339 22 22 chr11 88409277 88409412 -60374060 - MIR SINE MIR -118 144 7 1293 179 153 36 chr11 88410017 88410324 -60373148 - MER61A LTR ERV1 0 343 1 931 226 99 28 chr11 88410637 88411101 -60372371 + MER39 LTR ERV1 8 542 0 396 277 108 7 chr11 88411344 88411492 -60371980 - MIR SINE MIR -99 163 1 2033 132 34 0 chr11 88411692 88411987 -60371485 + AluSx SINE Alu 1 305 -7 492 86 0 0 chr11 88411987 88412057 -60371415 + (T)n Simple_repeat Simple_repeat 1 70 0 189 0 0 0 chr11 88412178 88412199 -60371273 + (A)n Simple_repeat Simple_repeat 1 21 0 599 0 0 14 chr11 88412199 88412271 -60371201 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 371 214 110 76 chr11 88412373 88412518 -60370954 + MIR3 SINE MIR 2 151 -57 1107 251 131 57 chr11 88412562 88413073 -60370399 - MLT1H LTR MaLR 0 549 1 355 253 11 0 chr11 88413085 88413180 -60370292 + MER103 DNA DNA 1 96 -70 455 290 17 11 chr11 88413740 88413916 -60369556 + MIR SINE MIR 26 202 -60 235 206 0 59 chr11 88413934 88414002 -60369470 - L2 LINE L2 -2 3311 3248 * 1221 308 173 18 chr11 88413994 88415113 -60368359 - L2 LINE L2 -310 3003 1712 274 273 186 37 chr11 88415113 88415355 -60368117 + MLT1J LTR MaLR 1 278 -233 3252 77 26 0 chr11 88415359 88415777 -60367695 + PABL_B LTR ERV1 1 429 -238 3043 83 25 25 chr11 88415777 88416225 -60367247 - LTR7 LTR ERV1 -2 448 1 2531 81 51 0 chr11 88416225 88416596 -60366876 - HERVH LTR ERV1 0 7713 7324 1380 138 14 0 chr11 88416596 88416813 -60366659 - HERVH LTR ERV1 -1894 5819 5600 4874 117 27 3 chr11 88416814 88417518 -60365954 - HERVH LTR ERV1 -2564 5149 4429 219 208 75 0 chr11 88417709 88417762 -60365710 + L2 LINE L2 3196 3252 -20 8168 110 18 41 chr11 88417789 88419117 -60364355 - HERVH LTR ERV1 -3276 4437 3140 * 9912 107 18 33 chr11 88419096 88420652 -60362820 - HERVH LTR ERV1 -4718 2995 1463 219 114 0 0 chr11 88520773 88520808 -60262664 + (T)n Simple_repeat Simple_repeat 1 35 0 382 184 197 75 chr11 88521036 88521183 -60262289 + MIR3 SINE MIR 29 193 -15 975 226 16 43 chr11 88521661 88521918 -60261554 - MIR SINE MIR -10 252 3 259 284 14 0 chr11 88522561 88522635 -60260837 - L2 LINE L2 0 3313 3239 339 276 0 0 chr11 88522979 88523066 -60260406 - L1MC4 LINE L1 -1342 6700 6614 2784 108 0 21 chr11 88523067 88523495 -60259977 - MLT2A1 LTR ERVL -25 419 1 16864 67 22 16 chr11 88523495 88525815 -60257657 - HERVL-A1 LTR ERVL 0 5654 3323 8666 68 19 2 chr11 88525827 88527006 -60256466 - HERVL-A2 LTR ERVL -4456 1198 1 312 59 78 0 chr11 88527006 88527057 -60256415 - MLT2A2 LTR ERVL 0 453 399 360 219 0 62 chr11 88527077 88527173 -60256299 - L1MC4 LINE L1 -1339 6703 6614 259 151 0 41 chr11 88527191 88527264 -60256208 + (TA)n Simple_repeat Simple_repeat 2 71 0 871 81 0 0 chr11 88527264 88527375 -60256097 - HERVL LTR ERVL -3278 2376 2266 506 75 12 0 chr11 88527375 88527455 -60256017 + (TA)n Simple_repeat Simple_repeat 1 81 0 2736 86 0 5 chr11 88527455 88527841 -60255631 - MLT2A1 LTR ERVL -60 384 1 2088 81 30 37 chr11 88527893 88528191 -60255281 - AluY SINE Alu -15 296 1 250 229 9 83 chr11 88528211 88528320 -60255152 - MIR SINE MIR -2 260 160 208 163 23 0 chr11 88528321 88528364 -60255108 + (CA)n Simple_repeat Simple_repeat 2 45 0 425 222 111 26 chr11 88528386 88528503 -60254969 - MIR SINE MIR -125 137 11 369 295 0 0 chr11 88528877 88528972 -60254500 + MIR SINE MIR 74 168 -94 273 269 195 0 chr11 88528971 88529099 -60254373 - MIR3 SINE MIR -85 123 9 * 240 258 54 21 chr11 88529515 88529608 -60253864 - L2 LINE L2 -5 3308 3213 397 321 62 47 chr11 88529802 88530123 -60253349 + L2 LINE L2 2199 2524 -790 190 337 96 45 chr11 88530262 88530440 -60253032 - MIR SINE MIR -56 206 20 208 368 57 9 chr11 88530516 88530622 -60252850 - MIR SINE MIR -79 129 19 42238 38 0 3 chr11 88530835 88537006 -60246466 - L1PA3 LINE L1 0 6155 4 21 36 0 0 chr11 88538956 88538984 -60244488 + AT_rich Low_complexity Low_complexity 1 28 0 721 326 109 79 chr11 88539347 88539869 -60243603 + L3 LINE CR1 569 1114 -463 446 129 0 59 chr11 88539869 88539954 -60243518 + MADE1 DNA Mariner 1 80 0 721 326 109 79 chr11 88539954 88540053 -60243419 + L3 LINE CR1 1114 1209 -368 208 278 0 0 chr11 88540109 88540163 -60243309 + L3 LINE CR1 1349 1402 -175 280 276 0 0 chr11 88541179 88541237 -60242235 + L2 LINE L2 3245 3302 -11 219 293 49 12 chr11 88541298 88541380 -60242092 - L2 LINE L2 -919 2395 2311 199 382 103 15 chr11 88542652 88542788 -60240684 - L2 LINE L2 0 3272 3125 432 299 117 34 chr11 88543609 88544144 -60239328 + L1ME LINE L1 5319 5905 -216 273 331 93 7 chr11 88544240 88544391 -60239081 + MIR SINE MIR 46 209 -53 29 101 0 0 chr11 88544449 88544548 -60238924 + AT_rich Low_complexity Low_complexity 1 99 0 728 246 114 18 chr11 88544690 88544918 -60238554 - MIR SINE MIR -5 257 8 223 226 19 0 chr11 88545231 88545284 -60238188 + (TA)n Simple_repeat Simple_repeat 1 54 0 538 265 147 5 chr11 88545473 88545677 -60237795 + MIR SINE MIR 29 261 -1 23 54 0 0 chr11 88546086 88546123 -60237349 + AT_rich Low_complexity Low_complexity 1 37 0 1130 23 0 0 chr11 88546273 88546438 -60237034 + L1PA4 LINE L1 6009 6173 0 688 169 22 13 chr11 88546588 88546811 -60236661 + CT-rich Low_complexity Low_complexity 1 224 0 372 273 37 166 chr11 88546870 88547196 -60236276 - L2 LINE L2 -1 3271 2988 479 284 91 47 chr11 88547233 88547302 -60236170 - MIR SINE MIR 0 262 197 1934 161 36 28 chr11 88547302 88547663 -60235809 - THE1B LTR MaLR 0 364 1 479 284 91 47 chr11 88547663 88547825 -60235647 - MIR SINE MIR -65 197 21 191 311 189 8 chr11 88547903 88548025 -60235447 + L3b LINE CR1 1358 1501 -82 310 258 125 16 chr11 88548546 88548674 -60234798 + MIR SINE MIR 13 154 -108 2101 119 3 0 chr11 88548687 88548973 -60234499 - AluSg SINE Alu -23 287 1 225 250 94 31 chr11 88549989 88550053 -60233419 + MER91C DNA MER1_type 36 103 -37 2143 165 58 0 chr11 88550424 88550817 -60232655 + L1PB4 LINE L1 5734 6149 -7 248 358 14 53 chr11 88551087 88551294 -60232178 + L3 LINE CR1 1372 1570 -7 225 297 161 34 chr11 88551806 88551924 -60231548 + MIR3 SINE MIR 61 193 -15 282 227 0 0 chr11 88552388 88552463 -60231009 + (TA)n Simple_repeat Simple_repeat 2 76 0 26 50 0 0 chr11 88553558 88553598 -60229874 + AT_rich Low_complexity Low_complexity 1 40 0 285 295 143 0 chr11 88553610 88553715 -60229757 - MIR SINE MIR -44 218 99 246 235 132 66 chr11 88554749 88554885 -60228587 - L2 LINE L2 -62 3251 3107 180 179 0 0 chr11 88555460 88555499 -60227973 + T-rich Low_complexity Low_complexity 1 39 0 218 320 105 39 chr11 88555571 88555724 -60227748 - MIR SINE MIR -65 197 35 392 325 50 12 chr11 88556524 88556684 -60226788 - L2 LINE L2 0 3272 3107 415 314 51 6 chr11 88557171 88557346 -60226126 + MIR SINE MIR 53 235 -27 3777 114 15 19 chr11 88558301 88558915 -60224557 - L1MA3 LINE L1 -101 6204 5594 6357 85 22 8 chr11 88558930 88559844 -60223628 - L1MA1 LINE L1 0 6302 5376 1781 123 132 21 chr11 88559888 88560214 -60223258 - THE1B LTR MaLR -2 362 1 11566 97 6 4 chr11 88560214 88561792 -60221680 - THE1B-int LTR MaLR 0 1580 1 1040 136 52 37 chr11 88561792 88561983 -60221489 - THE1B LTR MaLR 0 364 171 303 54 0 0 chr11 88561984 88562021 -60221451 - THE1B LTR MaLR -338 37 1 198 383 0 0 chr11 88562983 88563064 -60220408 - L2 LINE L2 -5 3308 3228 1675 186 0 25 chr11 88563081 88563404 -60220068 - L1MC1 LINE L1 -1 6332 6018 252 254 0 0 chr11 88563406 88563473 -60219999 - L1PA15-16 LINE L1 -4449 2400 2334 5886 132 18 7 chr11 88563475 88565108 -60218364 + L1PA13 LINE L1 4488 6137 -26 874 78 43 0 chr11 88565110 88565226 -60218246 - AluSg/x SINE Alu -18 292 172 4472 204 62 35 chr11 88565261 88567280 -60216192 - L1MC1 LINE L1 -308 6025 3935 264 279 108 63 chr11 88567452 88567563 -60215909 + L2 LINE L2 3197 3312 -1 188 348 68 31 chr11 88567632 88567793 -60215679 - L2 LINE L2 -218 3054 2888 1572 206 29 55 chr11 88568736 88569018 -60214454 - MLT1C LTR MaLR -1 466 178 2225 100 0 7 chr11 88569018 88569317 -60214155 - AluSg1 SINE Alu -12 297 1 2259 98 0 7 chr11 88569317 88569614 -60213858 - AluSq SINE Alu -18 295 1 1572 206 29 55 chr11 88569614 88569762 -60213710 - MLT1C LTR MaLR -288 179 46 2503 57 0 3 chr11 88569762 88570062 -60213410 - AluY SINE Alu -12 299 1 1572 206 29 55 chr11 88570062 88570105 -60213367 - MLT1C LTR MaLR -421 46 3 187 367 92 0 chr11 88570109 88570218 -60213254 + L2 LINE L2 3153 3271 -1 2138 99 0 14 chr11 88570502 88570795 -60212677 + AluY SINE Alu 3 291 -20 342 0 0 0 chr11 88570795 88570833 -60212639 + (CA)n Simple_repeat Simple_repeat 2 39 0 224 287 61 52 chr11 88570859 88570974 -60212498 + L2 LINE L2 3153 3268 -45 294 204 0 118 chr11 88571167 88571260 -60212212 + MER69 DNA AcHobo 2445 2526 0 197 356 139 0 chr11 88571466 88571581 -60211891 + L2 LINE L2 3169 3299 -14 253 83 56 28 chr11 88571606 88571678 -60211794 + (TTTA)n Simple_repeat Simple_repeat 3 76 0 645 295 21 16 chr11 88571693 88571886 -60211586 - MIR SINE MIR -56 206 13 230 316 131 32 chr11 88572265 88572594 -60210878 - L2 LINE L2 -682 2632 2220 369 248 188 83 chr11 88572617 88572931 -60210541 - L2 LINE L2 0 3313 2967 459 208 20 20 chr11 88572940 88573041 -60210431 - MER3 DNA MER1_type -76 133 33 248 255 103 83 chr11 88573252 88573397 -60210075 - MIR3 SINE MIR -17 191 44 180 0 0 0 chr11 88573996 88574016 -60209456 + (T)n Simple_repeat Simple_repeat 1 20 0 201 397 50 20 chr11 88574649 88574848 -60208624 + L2 LINE L2 2831 3035 -237 389 344 130 5 chr11 88575005 88575220 -60208252 - MIR SINE MIR -10 252 11 2112 129 0 19 chr11 88576386 88576697 -60206775 - AluSx SINE Alu -7 305 1 719 265 111 31 chr11 88576770 88577121 -60206351 - L1MEd LINE L1 -5733 386 8 210 336 74 63 chr11 88577684 88577955 -60205517 - L2 LINE L2 -349 2965 2692 2303 71 40 0 chr11 88578114 88578410 -60205062 - AluY SINE Alu -3 308 1 207 0 0 0 chr11 88578410 88578433 -60205039 + (T)n Simple_repeat Simple_repeat 1 23 0 1699 83 0 0 chr11 88578437 88578642 -60204830 - AluSc SINE Alu -103 206 2 185 293 0 0 chr11 88579106 88579147 -60204325 + L2 LINE L2 3219 3259 -13 795 278 59 17 chr11 88580184 88580472 -60203000 + MER102b DNA MER1_type 1 300 -41 277 299 13 0 chr11 88580593 88580670 -60202802 - L2 LINE L2 0 3272 3195 1046 263 111 42 chr11 88581931 88582436 -60201036 - Charlie8 DNA MER1_type -1877 540 1 330 255 41 0 chr11 88582621 88582719 -60200753 - L1MC4 LINE L1 -17 8025 7924 199 305 0 0 chr11 88582803 88582862 -60200610 + MIR SINE MIR 172 230 -32 188 151 189 19 chr11 88583008 88583061 -60200411 + L2 LINE L2 2508 2569 -745 953 251 86 143 chr11 88583107 88584007 -60199465 + L1MDa LINE L1 104 951 -5589 510 244 111 0 chr11 88584107 88584242 -60199230 + L2 LINE L2 2687 2836 -478 1152 214 131 46 chr11 88584244 88584595 -60198877 + MLT1E2 LTR MaLR 2 382 -242 1136 208 33 145 chr11 88584595 88584989 -60198483 + MLT2B1 LTR ERVL 1 350 -64 204 266 0 31 chr11 88584992 88585056 -60198416 + (TG)n Simple_repeat Simple_repeat 1 62 0 228 37 0 0 chr11 88585071 88585098 -60198374 + MLT2B1 LTR ERVL 438 464 0 * 1110 220 58 0 chr11 88585098 88585337 -60198135 + MLT1E2 LTR MaLR 374 626 0 1205 252 76 57 chr11 88585338 88585810 -60197662 + L2 LINE L2 2833 3313 0 2133 121 0 10 chr11 88587487 88587792 -60195680 - AluSq SINE Alu -1 312 11 25 51 0 0 chr11 88587942 88587981 -60195491 + AT_rich Low_complexity Low_complexity 1 39 0 1832 168 18 0 chr11 88588194 88588521 -60194951 - L1PA16 LINE L1 -9 6157 5825 963 177 94 61 chr11 88588542 88588819 -60194653 - L1MA10 LINE L1 -13 6321 6036 185 248 257 35 chr11 88588820 88588933 -60194539 - MIR SINE MIR -71 191 54 249 316 32 0 chr11 88588967 88589062 -60194410 + CT-rich Low_complexity Low_complexity 3 100 0 294 29 0 0 chr11 88589390 88589425 -60194047 + (TC)n Simple_repeat Simple_repeat 2 36 0 186 43 0 0 chr11 88589426 88589449 -60194023 + (CA)n Simple_repeat Simple_repeat 2 24 0 419 340 28 35 chr11 88589756 88589897 -60193575 + L2 LINE L2 3128 3267 -5 355 276 102 69 chr11 88590038 88590278 -60193194 - MIR SINE MIR -1 261 6 228 240 147 0 chr11 88590414 88590489 -60192983 - MIR SINE MIR -67 195 110 2345 52 0 0 chr11 88590912 88591224 -60192248 + L1PA5 LINE L1 5857 6168 0 2281 104 7 0 chr11 88591460 88591758 -60191714 + AluSx SINE Alu 1 300 -12 192 156 0 0 chr11 88592012 88592044 -60191428 - MIR SINE MIR -15 247 216 258 176 0 0 chr11 88592044 88592095 -60191377 + (TA)n Simple_repeat Simple_repeat 1 51 0 1073 150 0 0 chr11 88592560 88592720 -60190752 - AluSg/x SINE Alu -27 285 126 208 364 51 40 chr11 88594829 88595005 -60188467 + L2 LINE L2 2710 2887 -427 2426 100 3 0 chr11 88595475 88595784 -60187688 + AluSp SINE Alu 1 310 -3 315 179 0 0 chr11 88595787 88595843 -60187629 + L1MC4 LINE L1 6648 6703 -1339 310 247 71 0 chr11 88595838 88595923 -60187549 + L1MCa LINE L1 2006 2096 -4330 * 251 284 60 114 chr11 88596522 88596723 -60186749 - L2 LINE L2 -52 3220 3031 369 336 0 19 chr11 88596879 88596986 -60186486 - MIR SINE MIR -87 121 17 312 27 0 0 chr11 88597272 88597309 -60186163 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 181 310 10 60 chr11 88597887 88597987 -60185485 - MIR SINE MIR -50 212 118 322 320 0 24 chr11 88598126 88598251 -60185221 - LTR67 LTR ERVL -11 546 425 270 331 141 8 chr11 88598770 88598891 -60184581 - MIR SINE MIR -106 156 20 334 234 284 0 chr11 88599004 88599145 -60184327 - L2 LINE L2 -1508 1806 1626 247 319 0 0 chr11 88599255 88599327 -60184145 + L2 LINE L2 3221 3292 -21 277 313 139 0 chr11 88599809 88599924 -60183548 + L2 LINE L2 3142 3272 0 180 0 0 0 chr11 88600992 88601012 -60182460 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2338 122 0 0 chr11 88601454 88601766 -60181706 - AluSx SINE Alu 0 312 1 280 237 26 26 chr11 88602871 88602947 -60180525 + MIR3 SINE MIR 129 204 -4 1376 226 23 13 chr11 88603056 88603361 -60180111 - AluJo SINE Alu -4 308 1 290 227 50 67 chr11 88604383 88604502 -60178970 - MIR SINE MIR -58 204 88 427 278 226 31 chr11 88604600 88604927 -60178545 + L3 LINE CR1 836 1226 -351 650 276 75 0 chr11 88606960 88607159 -60176313 + MIR SINE MIR 49 262 0 207 139 0 0 chr11 88607160 88607196 -60176276 + (TTG)n Simple_repeat Simple_repeat 1 36 0 188 298 0 0 chr11 88607346 88607393 -60176079 + MIR SINE MIR 87 133 -75 180 245 38 19 chr11 88607394 88607447 -60176025 - L2 LINE L2 -21 3251 3198 243 232 21 95 chr11 88607460 88607555 -60175917 + L3 LINE CR1 1437 1524 -53 624 322 47 5 chr11 88607769 88607983 -60175489 + MIR SINE MIR 20 242 -20 215 216 0 0 chr11 88608532 88608569 -60174903 + L2 LINE L2 3219 3255 -17 215 238 0 0 chr11 88608533 88608575 -60174897 + MIR SINE MIR 216 257 -5 453 120 67 0 chr11 88609509 88609584 -60173888 - MER116 DNA Mariner 0 80 1 223 196 0 22 chr11 88610562 88610608 -60172864 + (CATA)n Simple_repeat Simple_repeat 2 46 0 256 211 233 11 chr11 88613096 88613186 -60170286 + MIR SINE MIR 78 187 -75 182 212 0 0 chr11 88613381 88613414 -60170058 - MIR SINE MIR -13 249 217 194 219 96 82 chr11 88614278 88614351 -60169121 - L2 LINE L2 -50 3222 3149 195 286 71 14 chr11 88614473 88614543 -60168929 - L2 LINE L2 -5 3267 3194 403 348 11 28 chr11 88614951 88615129 -60168343 + MIR3 SINE MIR 4 178 -30 803 256 124 65 chr11 88615556 88616334 -60167138 + L1MC4 LINE L1 7052 7896 -146 309 26 0 0 chr11 88616334 88616372 -60167100 + (TG)n Simple_repeat Simple_repeat 2 39 0 803 256 124 65 chr11 88616372 88616527 -60166945 + L1MC4 LINE L1 7896 8040 -2 368 264 0 0 chr11 88617719 88617806 -60165666 + L2 LINE L2 3186 3272 0 246 227 71 71 chr11 88618180 88618334 -60165138 - L1ME LINE L1 -218 5903 5750 400 212 24 0 chr11 88618799 88618884 -60164588 + AluJ/FRAM SINE Alu 215 301 -11 205 200 0 0 chr11 88618888 88618923 -60164549 - MER5A DNA MER1_type -64 125 91 229 255 0 0 chr11 88618983 88619030 -60164442 + L2 LINE L2 3222 3268 -4 991 309 131 30 chr11 88619073 88620033 -60163439 - L2 LINE L2 0 3313 2243 486 264 101 13 chr11 88620637 88620796 -60162676 - MIR3 SINE MIR -23 185 13 649 196 23 0 chr11 88620897 88621030 -60162442 - MIR SINE MIR 0 262 127 367 337 52 12 chr11 88621106 88621278 -60162194 + L2 LINE L2 2256 2434 -880 214 268 28 14 chr11 88621945 88622016 -60161456 - MIR3 SINE MIR -4 204 133 637 313 39 22 chr11 88622556 88622786 -60160686 - MIR SINE MIR -9 253 20 2328 93 3 3 chr11 88623134 88623445 -60160027 + AluY SINE Alu 1 311 0 958 280 17 4 chr11 88623448 88623687 -60159785 + MIR SINE MIR 20 261 -1 273 57 0 0 chr11 88623704 88623739 -60159733 + (TTC)n Simple_repeat Simple_repeat 1 35 0 245 269 85 23 chr11 88624360 88624490 -60158982 + L3 LINE CR1 1384 1521 -56 412 288 86 97 chr11 88624504 88624771 -60158701 + L3 LINE CR1 1233 1496 -81 202 188 0 0 chr11 88624781 88624813 -60158659 + (CTCA)n Simple_repeat Simple_repeat 4 35 0 290 352 0 19 chr11 88624932 88625037 -60158435 - L2 LINE L2 -248 3024 2922 241 163 0 0 chr11 88625485 88625534 -60157938 + (TA)n Simple_repeat Simple_repeat 1 49 0 2230 89 3 10 chr11 88625534 88625827 -60157645 - AluY SINE Alu -20 291 1 401 290 188 18 chr11 88626123 88626347 -60157125 + MIR SINE MIR 1 262 0 225 0 0 0 chr11 88626488 88626513 -60156959 + (A)n Simple_repeat Simple_repeat 1 25 0 302 318 97 17 chr11 88626875 88627051 -60156421 + MIR3 SINE MIR 12 201 -7 198 0 0 0 chr11 88627216 88627238 -60156234 + (TAGG)n Simple_repeat Simple_repeat 1 22 0 387 319 43 21 chr11 88627240 88627381 -60156091 - MIR SINE MIR -118 144 1 217 298 60 24 chr11 88627404 88627488 -60155984 + L3 LINE CR1 1129 1215 -362 378 310 76 16 chr11 88627840 88628143 -60155329 + L1MC4a LINE L1 5318 5638 -2170 314 278 44 49 chr11 88628147 88628352 -60155120 + L1MC4a LINE L1 5694 5897 -1911 30 0 0 0 chr11 88628364 88628394 -60155078 + AT_rich Low_complexity Low_complexity 1 30 0 323 265 43 55 chr11 88628758 88629011 -60154461 + L1MC4a LINE L1 5709 5958 -1850 776 103 0 9 chr11 88629183 88629299 -60154173 - FLAM_C SINE Alu -17 116 2 2292 80 0 3 chr11 88631114 88631400 -60152072 + AluSc SINE Alu 9 293 -16 188 316 138 26 chr11 88632417 88632569 -60150903 - MIR3 SINE MIR -5 203 35 2620 49 0 0 chr11 88633330 88633638 -60149834 + AluY SINE Alu 1 308 -3 216 336 74 63 chr11 88633797 88634068 -60149404 + L2 LINE L2 2692 2965 -349 610 265 111 31 chr11 88634631 88634982 -60148490 + L1MEd LINE L1 8 386 -5733 1888 150 0 19 chr11 88635055 88635362 -60148110 + AluSx SINE Alu 1 301 -11 368 264 0 0 chr11 88636541 88636628 -60146844 + L2 LINE L2 3186 3272 0 246 227 71 71 chr11 88637003 88637157 -60146315 - L1ME LINE L1 -218 5903 5750 400 212 24 0 chr11 88637622 88637707 -60145765 + AluJ/FRAM SINE Alu 215 301 -11 205 200 0 0 chr11 88637711 88637746 -60145726 - MER5A DNA MER1_type -64 125 91 229 255 0 0 chr11 88637806 88637853 -60145619 + L2 LINE L2 3222 3268 -4 991 309 131 30 chr11 88637896 88638856 -60144616 - L2 LINE L2 0 3313 2243 192 135 0 0 chr11 88639481 88639518 -60143954 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 296 340 0 0 chr11 88639561 88639723 -60143749 + T-rich Low_complexity Low_complexity 1 162 0 338 292 23 0 chr11 88639741 88639871 -60143601 - MIR SINE MIR -3 259 127 367 337 52 12 chr11 88639947 88640119 -60143353 + L2 LINE L2 2256 2434 -880 214 268 28 14 chr11 88640786 88640857 -60142615 - MIR3 SINE MIR -4 204 133 640 313 39 22 chr11 88641397 88641627 -60141845 - MIR SINE MIR -9 253 20 2307 93 3 3 chr11 88641975 88642286 -60141186 + AluY SINE Alu 1 311 0 954 280 17 4 chr11 88642289 88642528 -60140944 + MIR SINE MIR 20 261 -1 273 57 0 0 chr11 88642545 88642580 -60140892 + (TTC)n Simple_repeat Simple_repeat 1 35 0 242 269 85 23 chr11 88643201 88643331 -60140141 + L3 LINE CR1 1384 1521 -56 412 288 86 97 chr11 88643345 88643612 -60139860 + L3 LINE CR1 1233 1496 -81 202 188 0 0 chr11 88643622 88643654 -60139818 + (CTCA)n Simple_repeat Simple_repeat 4 35 0 292 352 0 19 chr11 88643773 88643878 -60139594 - L2 LINE L2 -248 3024 2922 241 163 0 0 chr11 88644326 88644375 -60139097 + (TA)n Simple_repeat Simple_repeat 2 50 0 2221 89 3 10 chr11 88644375 88644668 -60138804 - AluY SINE Alu -20 291 1 409 290 188 18 chr11 88644964 88645188 -60138284 + MIR SINE MIR 1 262 0 216 0 0 0 chr11 88645329 88645353 -60138119 + (A)n Simple_repeat Simple_repeat 1 24 0 293 318 97 17 chr11 88645715 88645891 -60137581 + MIR3 SINE MIR 12 201 -7 198 0 0 0 chr11 88646056 88646078 -60137394 + (TAGG)n Simple_repeat Simple_repeat 1 22 0 385 319 43 21 chr11 88646080 88646221 -60137251 - MIR SINE MIR -118 144 1 216 298 60 24 chr11 88646244 88646328 -60137144 + L3 LINE CR1 1129 1215 -362 440 304 89 16 chr11 88646667 88646983 -60136489 + L1MC4a LINE L1 5300 5638 -2170 363 278 44 49 chr11 88646987 88647192 -60136280 + L1MC4a LINE L1 5694 5897 -1911 30 0 0 0 chr11 88647204 88647234 -60136238 + AT_rich Low_complexity Low_complexity 1 30 0 384 265 43 55 chr11 88647598 88647851 -60135621 + L1MC4a LINE L1 5709 5958 -1850 760 103 0 9 chr11 88648023 88648139 -60135333 - FLAM_C SINE Alu -17 116 2 2295 80 0 3 chr11 88649953 88650240 -60133232 + AluSc SINE Alu 9 294 -15 2657 42 0 0 chr11 88652170 88652478 -60130994 + AluY SINE Alu 1 308 -3 23 33 0 0 chr11 88654212 88654242 -60129230 + AT_rich Low_complexity Low_complexity 1 30 0 2274 93 0 0 chr11 88654437 88654728 -60128744 + AluY SINE Alu 1 291 -20 24 0 0 0 chr11 88656398 88656422 -60127050 + AT_rich Low_complexity Low_complexity 1 24 0 341 340 96 32 chr11 88657048 88657392 -60126080 + L2 LINE L2 2818 3183 -89 443 303 102 16 chr11 88658388 88658664 -60124808 - L2 LINE L2 0 3313 2968 444 305 140 18 chr11 88658685 88658849 -60124623 + MER5A DNA MER1_type 6 189 0 270 305 21 21 chr11 88660013 88660108 -60123364 - MIR3 SINE MIR 0 208 114 314 309 31 0 chr11 88661813 88661910 -60121562 + MIR3 SINE MIR 98 197 -11 318 309 8 56 chr11 88662655 88662781 -60120691 - L2 LINE L2 0 3313 3194 244 327 179 23 chr11 88663020 88663372 -60120100 - L2 LINE L2 -337 2977 2571 458 219 0 0 chr11 88663372 88663477 -60119995 + FRAM SINE Alu 67 171 -5 2388 67 0 0 chr11 88663661 88663980 -60119492 - AluY SINE Alu 0 319 1 194 205 77 0 chr11 88664006 88664045 -60119427 + L2 LINE L2 3214 3255 -17 748 272 12 41 chr11 88664203 88664449 -60119023 - MIR SINE MIR 0 262 24 460 272 68 0 chr11 88664867 88665014 -60118458 + MIR SINE MIR 63 219 -43 712 315 47 0 chr11 88665225 88665457 -60118015 + MIR SINE MIR 20 262 0 573 252 0 8 chr11 88665913 88666044 -60117428 + L2 LINE L2 3184 3313 0 651 265 10 64 chr11 88666440 88666644 -60116828 - MIR SINE MIR -50 212 20 754 156 22 17 chr11 88667159 88667338 -60116134 + CT-rich Low_complexity Low_complexity 1 180 0 1841 165 0 7 chr11 88667361 88667664 -60115808 - AluJb SINE Alu -11 301 1 1461 175 121 19 chr11 88668065 88668380 -60115092 + MER7A DNA MER2_type 2 346 0 225 254 17 17 chr11 88669169 88669228 -60114244 - MIR SINE MIR 0 262 204 2349 94 0 3 chr11 88669923 88670230 -60113242 + AluSq SINE Alu 1 306 -7 201 299 192 65 chr11 88670236 88670450 -60113022 + L2 LINE L2 3026 3266 -6 316 328 178 6 chr11 88670728 88670902 -60112570 - MIR SINE MIR -33 229 26 468 219 47 31 chr11 88671832 88671960 -60111512 + MIR SINE MIR 54 183 -79 904 260 36 0 chr11 88672047 88672266 -60111206 - MIR SINE MIR -21 241 15 300 270 72 9 chr11 88672298 88672409 -60111063 + L2 LINE L2 3105 3222 -91 507 160 15 76 chr11 88672425 88672556 -60110916 + L1PA11 LINE L1 6051 6173 -1 1114 218 48 24 chr11 88672585 88672987 -60110485 + MLT1D LTR MaLR 10 464 -41 22 0 0 0 chr11 88673369 88673391 -60110081 + AT_rich Low_complexity Low_complexity 1 22 0 2349 98 0 0 chr11 88673395 88673692 -60109780 + AluY SINE Alu 1 297 -14 210 234 247 0 chr11 88674017 88674094 -60109378 - L2 LINE L2 -17 3255 3160 931 251 24 0 chr11 88675011 88675218 -60108254 + MIR SINE MIR 13 224 -38 224 257 14 71 chr11 88675416 88675486 -60107986 - L2 LINE L2 0 3313 3248 445 254 48 18 chr11 88676025 88676190 -60107282 - MER104 DNA Tc2 -10 170 1 1313 153 9 0 chr11 88676398 88676614 -60106858 + L1PA15 LINE L1 5942 6159 -6 2307 91 0 3 chr11 88676907 88677205 -60106267 + AluY SINE Alu 1 297 -14 181 388 52 52 chr11 88677926 88678292 -60105180 - L2 LINE L2 -5 3267 2902 253 322 96 20 chr11 88678382 88678528 -60104944 - LTR33 LTR ERVL -16 505 349 570 232 124 49 chr11 88678548 88678770 -60104702 - LTR33 LTR ERVL -302 221 1 320 283 33 53 chr11 88678913 88679065 -60104407 - L2 LINE L2 -644 2670 2522 201 39 0 0 chr11 88679069 88679095 -60104377 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1385 76 0 6 chr11 88679131 88679303 -60104169 + AluSq SINE Alu 1 171 -142 195 330 75 21 chr11 88679399 88679493 -60103979 + MIR SINE MIR 50 148 -60 676 303 5 0 chr11 88681058 88681253 -60102219 - MIR SINE MIR -11 251 56 562 210 63 14 chr11 88682504 88682647 -60100825 + MIR SINE MIR 2 151 -111 286 219 27 55 chr11 88682845 88682918 -60100554 + L2 LINE L2 3242 3312 -1 814 271 70 4 chr11 88683085 88683314 -60100158 - MIR SINE MIR -11 251 8 38 39 0 0 chr11 88683580 88683632 -60099840 + AT_rich Low_complexity Low_complexity 1 52 0 24 0 0 0 chr11 88684630 88684654 -60098818 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr11 88684899 88684924 -60098548 + AT_rich Low_complexity Low_complexity 1 25 0 186 43 0 0 chr11 88685568 88685591 -60097881 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 623 86 14 73 chr11 88685861 88686170 -60097302 + (TA)n Simple_repeat Simple_repeat 1 290 0 2202 118 0 0 chr11 88686341 88686647 -60096825 - AluSx SINE Alu -6 306 1 256 342 51 0 chr11 88686649 88686728 -60096744 + MIR SINE MIR 44 126 -82 * 4051 278 123 26 chr11 88686726 88687501 -60095971 + L2 LINE L2 1249 1947 -1366 2407 73 0 3 chr11 88687501 88687801 -60095671 - AluY SINE Alu -11 300 2 4051 278 123 26 chr11 88687801 88688905 -60094567 + L2 LINE L2 1947 3312 -1 231 352 11 78 chr11 88691119 88691298 -60092174 + L2 LINE L2 3015 3181 -91 * 318 357 28 74 chr11 88691276 88691601 -60091871 - L2 LINE L2 -874 2440 2131 638 278 148 9 chr11 88691691 88691914 -60091558 + MIR SINE MIR 2 255 -7 26 50 0 0 chr11 88691972 88692012 -60091460 + AT_rich Low_complexity Low_complexity 1 40 0 1447 168 17 57 chr11 88692105 88692403 -60091069 + AluJb SINE Alu 3 288 -24 711 33 0 0 chr11 88692422 88692512 -60090960 + (GGAA)n Simple_repeat Simple_repeat 4 93 0 7291 38 17 6 chr11 88693052 88693975 -60089497 - L1PA5 LINE L1 -4 6150 5225 1995 136 25 0 chr11 88693975 88694261 -60089211 - AluSg SINE Alu -17 293 1 257 86 0 0 chr11 88695782 88695817 -60087655 - MLT1J LTR MaLR -377 134 100 524 236 142 14 chr11 88695907 88696055 -60087417 - MIR SINE MIR -4 258 92 1777 204 0 7 chr11 88696056 88696360 -60087112 + AluJb SINE Alu 1 302 -10 231 360 64 25 chr11 88696401 88696604 -60086868 - L2 LINE L2 -710 2604 2394 431 301 74 6 chr11 88697149 88697312 -60086160 - MIR3 SINE MIR -19 189 16 566 139 121 64 chr11 88697430 88697546 -60085926 - L1MA9 LINE L1 -34 6278 6147 297 0 0 0 chr11 88697546 88697579 -60085893 + (TG)n Simple_repeat Simple_repeat 2 34 0 566 139 121 64 chr11 88697579 88697635 -60085837 - L1MA9 LINE L1 -165 6147 6096 226 312 96 16 chr11 88697654 88697779 -60085693 - L2 LINE L2 0 3272 3138 1281 120 0 36 chr11 88697871 88698063 -60085409 - AluY SINE Alu -126 185 1 3674 191 10 7 chr11 88698063 88698896 -60084576 - L1 LINE L1 -1584 4562 3728 616 185 13 45 chr11 88698968 88699125 -60084347 - Charlie7 DNA MER1_type -747 1865 1714 1707 245 89 12 chr11 88699137 88699696 -60083776 - L1ME3A LINE L1 -5 6165 5564 729 228 53 0 chr11 88699967 88700138 -60083334 - L1MDa LINE L1 -6334 206 27 432 219 7 52 chr11 88700138 88700293 -60083179 - L1ME3A LINE L1 -719 5443 5296 577 230 111 26 chr11 88700360 88700586 -60082886 - Charlie7 DNA MER1_type -881 1731 1487 26 0 0 0 chr11 88700759 88700785 -60082687 + AT_rich Low_complexity Low_complexity 1 26 0 1237 112 0 0 chr11 88701957 88702118 -60081354 - AluY SINE Alu -150 161 1 417 314 5 70 chr11 88703440 88703625 -60079847 - MIR SINE MIR -84 178 6 246 272 0 12 chr11 88703690 88703771 -60079701 + MER116 DNA Mariner 1 80 0 222 333 188 0 chr11 88703874 88703970 -60079502 + MIR SINE MIR 37 150 -58 32 43 0 0 chr11 88704665 88704711 -60078761 + AT_rich Low_complexity Low_complexity 1 46 0 200 378 24 63 chr11 88704728 88704855 -60078617 + MER91A DNA MER1_type 1 122 -74 223 183 50 0 chr11 88704865 88704925 -60078547 + (TA)n Simple_repeat Simple_repeat 1 63 0 1838 163 3 3 chr11 88705038 88705332 -60078140 + AluSx SINE Alu 1 294 -18 786 50 0 0 chr11 88705351 88705450 -60078022 + (GGAA)n Simple_repeat Simple_repeat 4 102 0 2172 131 37 3 chr11 88705655 88706007 -60077465 + L1PB4 LINE L1 5780 6143 -13 191 292 14 69 chr11 88706252 88706324 -60077148 - L2 LINE L2 -1 3271 3204 2221 109 3 10 chr11 88706519 88706832 -60076640 - AluSx SINE Alu -1 311 1 359 316 179 0 chr11 88707319 88707531 -60075941 + L3 LINE CR1 1326 1575 -2 24 0 0 0 chr11 88707531 88707555 -60075917 + AT_rich Low_complexity Low_complexity 1 24 0 521 277 60 60 chr11 88707824 88707955 -60075517 - MIR SINE MIR -8 254 121 4979 101 6 1 chr11 88707955 88708667 -60074805 + L1PA8 LINE L1 5456 6170 -2 521 277 60 60 chr11 88708667 88708784 -60074688 - MIR SINE MIR -140 122 6 2750 115 10 28 chr11 88708905 88709394 -60074078 - MER34B LTR ERV1 -30 535 1 279 100 0 0 chr11 88709361 88709401 -60074071 - MER34C LTR ERV1 -516 69 30 * 470 288 72 58 chr11 88709427 88709788 -60073684 + L1ME4a LINE L1 5726 6091 -30 336 331 115 21 chr11 88711423 88711761 -60071711 - L2 LINE L2 -464 2850 2481 207 300 130 20 chr11 88711963 88712063 -60071409 - MIR SINE MIR -67 141 31 369 0 0 0 chr11 88713002 88713043 -60070429 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 414 0 0 0 chr11 88715269 88715315 -60068157 + (TC)n Simple_repeat Simple_repeat 1 46 0 368 287 121 19 chr11 88715523 88715680 -60067792 + MIR SINE MIR 36 208 -54 232 317 45 60 chr11 88715759 88715905 -60067567 + MIR SINE MIR 1 181 -81 2116 140 0 9 chr11 88715905 88716220 -60067252 - AluSx SINE Alu 0 312 1 232 317 45 60 chr11 88716220 88716301 -60067171 + MIR SINE MIR 181 262 0 2148 107 13 0 chr11 88716395 88716694 -60066778 - AluSq SINE Alu -10 303 1 206 294 0 0 chr11 88716707 88716758 -60066714 + L3 LINE CR1 1511 1561 -16 4412 183 75 6 chr11 88717511 88718506 -60064966 - Tigger6a DNA MER2_type -5 1078 15 189 0 0 0 chr11 88719033 88719054 -60064418 + (A)n Simple_repeat Simple_repeat 1 21 0 211 277 106 32 chr11 88719163 88719257 -60064215 + MIR SINE MIR 5 105 -157 2402 93 3 3 chr11 88719469 88719781 -60063691 - AluSx SINE Alu 0 312 1 1951 160 81 20 chr11 88720015 88720422 -60063050 + MSTB1 LTR MaLR 1 432 0 286 303 214 7 chr11 88720681 88720826 -60062646 - MER5B DNA MER1_type -3 175 1 2137 117 47 3 chr11 88721237 88721537 -60061935 - AluSq SINE Alu 0 313 1 21 36 0 0 chr11 88722425 88722453 -60061019 + AT_rich Low_complexity Low_complexity 1 28 0 198 297 17 42 chr11 88722890 88723008 -60060464 - L2 LINE L2 -40 3273 3159 208 261 43 43 chr11 88723102 88723171 -60060301 + MIR SINE MIR 82 150 -112 551 293 85 67 chr11 88723670 88724261 -60059211 - L2 LINE L2 -12 3260 2647 2532 51 6 3 chr11 88724648 88724984 -60058488 - L1PA7 LINE L1 -281 5873 5537 614 82 0 0 chr11 88724984 88725063 -60058409 + L1PA6 LINE L1 6067 6151 -3 450 306 61 8 chr11 88725259 88725433 -60058039 + MIR SINE MIR 33 212 -50 210 301 220 12 chr11 88726513 88726686 -60056786 + MIR SINE MIR 3 211 -51 30 45 0 0 chr11 88726755 88726799 -60056673 + AT_rich Low_complexity Low_complexity 1 44 0 5189 92 18 17 chr11 88726801 88727152 -60056320 - L1PA11 LINE L1 0 6174 5825 2088 134 0 3 chr11 88727152 88727442 -60056030 - AluSx SINE Alu -22 290 2 5189 92 18 17 chr11 88727442 88727778 -60055694 - L1PA11 LINE L1 -349 5825 5483 185 65 32 0 chr11 88727778 88727809 -60055663 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 5189 92 18 17 chr11 88727809 88727903 -60055569 - L1PA11 LINE L1 -691 5483 5391 304 235 41 31 chr11 88728782 88728880 -60054592 + MIR SINE MIR 164 262 0 1978 136 10 3 chr11 88729329 88729624 -60053848 + AluSq SINE Alu 1 297 -16 205 182 0 0 chr11 88730409 88730442 -60053030 + (TATATG)n Simple_repeat Simple_repeat 4 36 0 334 195 81 46 chr11 88730443 88730530 -60052942 + L1MC4 LINE L1 6614 6703 -1339 219 69 0 0 chr11 88730530 88730559 -60052913 + (CA)n Simple_repeat Simple_repeat 2 30 0 316 288 51 34 chr11 88730810 88730928 -60052544 - MIR SINE MIR -55 153 34 255 136 45 0 chr11 88731480 88731524 -60051948 - L2 LINE L2 -7 3306 3261 614 285 34 46 chr11 88731653 88731916 -60051556 - MIR SINE MIR -1 261 2 220 293 73 12 chr11 88731964 88732046 -60051426 - L2 LINE L2 -50 3222 3136 2071 120 0 7 chr11 88732078 88732403 -60051069 - AluSx SINE Alu 0 312 1 293 327 140 0 chr11 88732408 88732515 -60050957 - L2 LINE L2 -25 3247 3126 203 308 58 25 chr11 88732728 88732848 -60050624 + MIR SINE MIR 138 261 -1 305 321 12 0 chr11 88733355 88733436 -60050036 - L3 LINE CR1 -72 1505 1424 272 266 31 0 chr11 88733462 88733526 -60049946 + L2 LINE L2 3244 3309 -4 2431 75 0 0 chr11 88733558 88733853 -60049619 - AluY SINE Alu -16 295 1 22 0 0 0 chr11 88734051 88734073 -60049399 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 65 chr11 88734705 88734751 -60048721 + AT_rich Low_complexity Low_complexity 1 43 0 744 146 31 15 chr11 88734751 88734881 -60048591 - L1PA16 LINE L1 -9 6157 6026 2120 101 0 36 chr11 88734949 88735256 -60048216 - AluSx SINE Alu -16 296 1 265 258 153 36 chr11 88735298 88735573 -60047899 - L1ME4a LINE L1 -4 6117 5811 28 0 0 0 chr11 88735673 88735701 -60047771 + AT_rich Low_complexity Low_complexity 1 28 0 329 321 0 27 chr11 88735806 88735990 -60047482 - L1ME4a LINE L1 -233 5888 5710 2287 100 3 0 chr11 88736123 88736423 -60047049 - AluSp SINE Alu -12 301 1 352 335 88 6 chr11 88737304 88737486 -60045986 - MIR SINE MIR 0 262 66 243 356 130 10 chr11 88737912 88738120 -60045352 + L2 LINE L2 2805 3037 -276 712 274 53 57 chr11 88738381 88738626 -60044846 - MIR SINE MIR -8 254 11 402 271 0 9 chr11 88739563 88739670 -60043802 - MIR SINE MIR -21 241 136 35 0 0 0 chr11 88739670 88739705 -60043767 + AT_rich Low_complexity Low_complexity 1 35 0 282 56 0 0 chr11 88739825 88739861 -60043611 + (TG)n Simple_repeat Simple_repeat 1 36 0 392 170 0 9 chr11 88739868 88739980 -60043492 + (TAGA)n Simple_repeat Simple_repeat 3 113 0 467 215 31 55 chr11 88739991 88740031 -60043441 - L1MC4a LINE L1 -1879 5929 5890 2173 82 0 46 chr11 88740031 88740376 -60043096 - AluY SINE Alu 0 331 1 467 215 31 55 chr11 88740376 88740496 -60042976 - L1MC4a LINE L1 -1918 5890 5771 330 287 59 6 chr11 88741098 88741267 -60042205 - MIR SINE MIR -64 198 19 627 300 30 17 chr11 88741598 88741828 -60041644 - MIR SINE MIR -25 237 5 289 170 0 0 chr11 88742561 88742608 -60040864 - MIR SINE MIR -12 250 204 398 339 24 0 chr11 88743413 88743540 -60039932 - MIR SINE MIR -59 149 20 615 299 25 5 chr11 88743566 88743767 -60039705 + L2 LINE L2 2554 2758 -556 2133 102 13 38 chr11 88744025 88744339 -60039133 - AluSx SINE Alu -6 306 1 293 326 70 0 chr11 88744498 88744584 -60038888 + L2 LINE L2 3155 3246 -26 484 242 70 37 chr11 88745605 88745784 -60037688 + MIR SINE MIR 23 212 -50 857 254 112 43 chr11 88746650 88747071 -60036401 - MLT1J2 LTR MaLR 0 450 1 281 254 15 0 chr11 88747082 88747149 -60036323 - MIR SINE MIR -1 261 194 1258 138 29 29 chr11 88747155 88747395 -60036077 - L1MB8 LINE L1 -25 6153 5914 291 320 10 0 chr11 88747407 88747504 -60035968 - MIR SINE MIR -71 191 94 390 306 72 28 chr11 88747670 88747850 -60035622 + MIR SINE MIR 25 212 -50 1351 224 17 35 chr11 88748761 88749105 -60034367 - MER58B DNA MER1_type -1 340 3 236 247 106 12 chr11 88749175 88749260 -60034212 + MIR SINE MIR 170 262 0 34 24 0 0 chr11 88749372 88749413 -60034059 + AT_rich Low_complexity Low_complexity 1 41 0 323 128 79 0 chr11 88749737 88749901 -60033571 + (TA)n Simple_repeat Simple_repeat 2 178 0 362 170 53 53 chr11 88750193 88750287 -60033185 - MIR SINE MIR -83 179 86 374 310 52 129 chr11 88750490 88750871 -60032601 + L2 LINE L2 2921 3272 0 194 282 113 0 chr11 88751380 88751451 -60032021 - MIR SINE MIR -6 256 178 998 169 0 89 chr11 88751769 88752006 -60031466 - AluJo SINE Alu -11 301 86 546 240 23 31 chr11 88752392 88752521 -60030951 + MIR SINE MIR 24 151 -111 1886 190 81 36 chr11 88752531 88752978 -60030494 - MLT1C LTR MaLR 0 467 1 571 239 24 160 chr11 88753213 88753589 -60029883 - L2 LINE L2 -7 3306 2982 * 2726 282 57 19 chr11 88753577 88754511 -60028961 - L2 LINE L2 -544 2770 1802 497 295 44 29 chr11 88754552 88754783 -60028689 + MIR SINE MIR 25 254 -8 873 309 24 0 chr11 88756363 88756609 -60026863 + MIR SINE MIR 11 262 0 528 270 40 17 chr11 88756792 88756966 -60026506 + MIR3 SINE MIR 3 180 -28 252 319 147 25 chr11 88759936 88760099 -60023373 + MIR SINE MIR 80 262 0 548 279 48 34 chr11 88760494 88760702 -60022770 - MIR SINE MIR -24 238 28 354 354 79 50 chr11 88761065 88761407 -60022065 + MER115 DNA AcHobo 105 456 -237 201 247 101 22 chr11 88762249 88762338 -60021134 + MIR SINE MIR 101 196 -66 238 385 73 0 chr11 88762863 88762972 -60020500 - L2 LINE L2 -19 3253 3137 201 236 56 130 chr11 88763121 88763282 -60020190 + MIR SINE MIR 101 249 -13 274 310 46 65 chr11 88763337 88763598 -60019874 - MLT1K LTR MaLR -43 545 290 245 185 141 65 chr11 88765946 88766038 -60017434 - MIR SINE MIR 0 262 164 187 229 125 0 chr11 88766111 88766159 -60017313 - L2 LINE L2 -31 3241 3188 2024 95 11 21 chr11 88766696 88767018 -60016454 - AluSg SINE Alu 0 319 1 253 324 95 9 chr11 88767018 88767123 -60016349 + L2 LINE L2 3156 3269 -3 2125 97 40 0 chr11 88767322 88767621 -60015851 + AluSp SINE Alu 1 311 -2 235 87 65 0 chr11 88767627 88767673 -60015799 + GA-rich Low_complexity Low_complexity 2 50 0 522 228 99 20 chr11 88767931 88768133 -60015339 + L1MC5 LINE L1 7603 7820 -141 25 0 0 0 chr11 88768721 88768746 -60014726 + AT_rich Low_complexity Low_complexity 1 25 0 219 262 33 0 chr11 88769417 88769478 -60013994 + L2 LINE L2 3200 3262 -10 254 315 0 14 chr11 88769956 88770029 -60013443 - L2 LINE L2 0 3313 3242 221 274 14 0 chr11 88770321 88770394 -60013078 + (TA)n Simple_repeat Simple_repeat 2 75 0 360 262 0 78 chr11 88770594 88770697 -60012775 + L2 LINE L2 3159 3253 -19 180 314 162 9 chr11 88770812 88770917 -60012555 - L2 LINE L2 -1 3271 3151 29 0 0 0 chr11 88770919 88770948 -60012524 + AT_rich Low_complexity Low_complexity 1 29 0 310 294 24 0 chr11 88770961 88771046 -60012426 - L1MC4 LINE L1 -1342 6700 6614 316 322 0 0 chr11 88771084 88771174 -60012298 - L1MC4 LINE L1 -1339 6703 6614 306 303 30 0 chr11 88771092 88771191 -60012281 + L1MC4 LINE L1 6607 6708 -1334 * 191 379 0 0 chr11 88771351 88771417 -60012055 - L2 LINE L2 -302 2970 2905 216 143 0 0 chr11 88771688 88771730 -60011742 + (T)n Simple_repeat Simple_repeat 1 42 0 2507 52 10 0 chr11 88771797 88772102 -60011370 - AluY SINE Alu -3 308 1 313 285 62 28 chr11 88772929 88773055 -60010417 + MIR SINE MIR 8 135 -73 289 332 107 43 chr11 88773060 88773179 -60010293 + L3 LINE CR1 1066 1176 -401 2106 130 9 32 chr11 88773179 88773524 -60009948 - MER1B DNA MER1_type 0 337 1 289 332 107 43 chr11 88773524 88773750 -60009722 + L3 LINE CR1 1176 1433 -144 333 399 54 0 chr11 88774344 88774512 -60008960 + L2 LINE L2 3095 3271 -1 296 248 101 70 chr11 88774778 88774907 -60008565 - L2 LINE L2 -18 3295 3163 274 284 45 0 chr11 88775122 88775189 -60008283 - L2 LINE L2 -5 3267 3198 428 310 96 29 chr11 88775651 88775871 -60007601 - MIR SINE MIR -12 250 19 245 238 0 107 chr11 88776195 88776279 -60007193 - L2 LINE L2 0 3272 3198 390 274 79 34 chr11 88776483 88776646 -60006826 + MIR SINE MIR 7 176 -69 272 294 130 0 chr11 88777144 88777236 -60006236 - L2 LINE L2 -28 3285 3182 252 281 235 36 chr11 88778144 88778340 -60005132 + MIR SINE MIR 22 256 -6 285 352 16 16 chr11 88778511 88778636 -60004836 - MIR SINE MIR -109 153 29 200 310 0 0 chr11 88778927 88778985 -60004487 + GA-rich Low_complexity Low_complexity 1 58 0 449 363 42 0 chr11 88779264 88779504 -60003968 - Charlie8 DNA MER1_type -2166 251 2 218 114 0 23 chr11 88779962 88780006 -60003466 + (CAATA)n Simple_repeat Simple_repeat 5 47 0 296 283 239 7 chr11 88780045 88780183 -60003289 + MIR SINE MIR 5 174 -88 192 97 0 0 chr11 88780469 88780500 -60002972 + (TC)n Simple_repeat Simple_repeat 2 32 0 666 196 95 0 chr11 88780513 88780661 -60002811 + MIR SINE MIR 100 261 -1 407 311 140 36 chr11 88780762 88780984 -60002488 + MIR SINE MIR 2 246 -16 2593 46 0 7 chr11 88781960 88782265 -60001207 + AluY SINE Alu 1 303 -8 274 250 0 0 chr11 88782398 88782450 -60001022 - MIR SINE MIR -130 78 27 219 258 53 76 chr11 88782718 88782850 -60000622 - L2 LINE L2 -191 3081 2953 293 217 0 58 chr11 88784537 88784606 -59998866 - L2 LINE L2 -1 3312 3248 2063 129 10 0 chr11 88785780 88786074 -59997398 + AluSx SINE Alu 1 297 -15 449 233 100 60 chr11 88786713 88786897 -59996575 + MIR SINE MIR 26 216 -46 2191 117 0 3 chr11 88787128 88787428 -59996044 + AluSx SINE Alu 1 299 -13 203 231 0 0 chr11 88788141 88788180 -59995292 + CT-rich Low_complexity Low_complexity 1 39 0 226 234 243 18 chr11 88788420 88788531 -59994941 - MIR SINE MIR -55 207 72 441 244 68 54 chr11 88788589 88788810 -59994662 - L2 LINE L2 -2 3311 3088 1976 216 69 11 chr11 88789186 88789663 -59993809 - MLT1D LTR MaLR 0 505 1 427 224 48 64 chr11 88789982 88790107 -59993365 - LTR33A LTR ERVL -322 201 79 385 233 10 13 chr11 88790916 88791024 -59992448 - L1MD2 LINE L1 -29 7779 6209 223 333 73 0 chr11 88791848 88791971 -59991501 + L3 LINE CR1 693 824 -753 996 280 132 55 chr11 88791995 88792973 -59990499 + HAL1 LINE L1 25 1077 -1430 325 195 9 142 chr11 88792977 88793090 -59990382 + L3 LINE CR1 1054 1151 -426 279 227 0 0 chr11 88793375 88793441 -59990031 + CT-rich Low_complexity Low_complexity 3 68 0 248 301 164 40 chr11 88794559 88794785 -59988687 + L2 LINE L2 2395 2648 -666 275 276 138 11 chr11 88795966 88796053 -59987419 + MIR SINE MIR 32 129 -79 226 364 8 42 chr11 88796679 88796797 -59986675 - MIR SINE MIR -32 230 117 274 400 26 5 chr11 88796827 88797022 -59986450 - MIR SINE MIR -12 250 52 322 259 71 12 chr11 88797589 88797674 -59985798 - L2 LINE L2 -19 3294 3205 387 41 0 0 chr11 88797833 88797886 -59985586 + (CA)n Simple_repeat Simple_repeat 1 102 0 387 41 0 0 chr11 88797886 88797935 -59985537 + (CA)n Simple_repeat Simple_repeat 1 49 0 333 318 96 32 chr11 88798681 88798901 -59984571 - MIR SINE MIR -13 249 16 353 314 51 0 chr11 88799140 88799258 -59984214 + L2 LINE L2 3189 3312 -1 290 325 152 7 chr11 88799853 88800004 -59983468 - MIR SINE MIR -70 192 20 889 20 0 3 chr11 88800016 88800027 -59983445 + L1P1 LINE L1 5702 5712 -443 2919 29 0 0 chr11 88800027 88800371 -59983101 - L1PA4 LINE L1 0 6155 5812 889 20 0 3 chr11 88800371 88800473 -59982999 + L1PA4 LINE L1 5712 5812 -343 526 264 41 45 chr11 88801298 88801513 -59981959 - MIR SINE MIR -34 228 16 568 256 93 0 chr11 88802244 88802416 -59981056 + MIR SINE MIR 64 251 -11 315 281 177 12 chr11 88803431 88803595 -59979877 - L2 LINE L2 -1 3312 3122 313 238 177 48 chr11 88803897 88804044 -59979428 + L1MC/D LINE L1 5614 5779 -2029 208 313 60 0 chr11 88804397 88804464 -59979008 + MIR SINE MIR 186 256 -6 900 200 0 0 chr11 88804558 88804703 -59978769 - FRAM SINE Alu -31 145 1 180 135 0 0 chr11 88805814 88805851 -59977621 + (T)n Simple_repeat Simple_repeat 1 37 0 1280 197 158 10 chr11 88805852 88806015 -59977457 - L1MD2 LINE L1 -15 6344 6207 333 0 0 0 chr11 88806015 88806052 -59977420 + (TG)n Simple_repeat Simple_repeat 2 38 0 1280 197 158 10 chr11 88806052 88806198 -59977274 - L1MD2 LINE L1 -152 6207 5989 180 0 0 0 chr11 88808608 88808628 -59974844 + (A)n Simple_repeat Simple_repeat 1 20 0 486 253 104 33 chr11 88808924 88809106 -59974366 - MIR3 SINE MIR -11 197 3 443 363 118 19 chr11 88810484 88810746 -59972726 - L2 LINE L2 0 3272 2985 570 320 53 0 chr11 88810749 88810974 -59972498 + MER112 DNA MER1_type 7 243 -17 613 296 24 0 chr11 88811155 88811324 -59972148 - MIR SINE MIR -13 249 77 450 224 75 22 chr11 88811421 88811537 -59971935 + MIR SINE MIR 56 181 -81 7432 33 0 7 chr11 88811537 88812586 -59970886 + L1PA4 LINE L1 5110 6152 -3 450 224 75 22 chr11 88812586 88812603 -59970869 + MIR SINE MIR 181 196 -66 213 200 173 0 chr11 88812623 88812698 -59970774 + MIR SINE MIR 171 258 -4 392 282 24 32 chr11 88813327 88813451 -59970021 - L2 LINE L2 0 3272 3150 232 218 0 18 chr11 88813755 88813810 -59969662 + L2 LINE L2 3219 3272 0 238 200 117 0 chr11 88815073 88815133 -59968339 + MIR SINE MIR 118 184 -78 238 356 34 0 chr11 88815612 88815730 -59967742 - L2 LINE L2 0 3272 3151 320 318 163 0 chr11 88816259 88816388 -59967084 + L2 LINE L2 3123 3272 0 2291 230 24 34 chr11 88816559 88817272 -59966200 + L1 LINE L1 2327 3032 -3114 425 151 124 167 chr11 88817492 88817568 -59965904 - MER45A DNA AcHobo -1403 178 100 1909 120 36 0 chr11 88817568 88817689 -59965783 + AluSx SINE Alu 1 116 -196 183 42 0 0 chr11 88817689 88817713 -59965759 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1909 120 36 0 chr11 88817713 88817865 -59965607 + AluSx SINE Alu 116 284 -28 425 151 124 167 chr11 88817865 88817974 -59965498 - MER45A DNA AcHobo -1481 100 1 2662 10 0 0 chr11 88818901 88819189 -59964283 - AluYa5 SINE Alu -2 309 22 314 176 27 0 chr11 88819445 88819519 -59963953 - L1MA10 LINE L1 -3 6331 6256 422 295 60 6 chr11 88820213 88820379 -59963093 - MIR SINE MIR -72 190 16 477 276 54 43 chr11 88821121 88821306 -59962166 + MIR SINE MIR 1 187 -75 3018 256 76 62 chr11 88821332 88821790 -59961682 + L1ME3A LINE L1 3587 4037 -2109 1610 160 57 0 chr11 88821790 88822053 -59961419 - AluSx SINE Alu -22 290 13 3018 256 76 62 chr11 88822053 88823377 -59960095 + L1ME3A LINE L1 4037 5393 -753 1683 213 103 26 chr11 88823383 88823798 -59959674 + L1ME3A LINE L1 5459 5919 -251 2024 195 175 15 chr11 88823798 88824336 -59959136 - MLT1E2 LTR MaLR -2 624 1 1683 213 103 26 chr11 88824336 88824414 -59959058 + L1ME3A LINE L1 5919 5990 -180 185 277 64 53 chr11 88824423 88824517 -59958955 + MIR SINE MIR 136 230 -32 1760 168 0 3 chr11 88825073 88825358 -59958114 - AluJb SINE Alu -28 284 1 237 293 122 41 chr11 88825493 88825616 -59957856 - L2 LINE L2 0 3272 3140 730 200 24 24 chr11 88825820 88825990 -59957482 + MER5B DNA MER1_type 8 177 -1 376 299 43 0 chr11 88827252 88827369 -59956103 + MIR SINE MIR 40 161 -101 * 506 290 101 14 chr11 88827367 88827574 -59955898 - MIR SINE MIR -2 260 36 207 195 24 0 chr11 88828479 88828520 -59954952 + CT-rich Low_complexity Low_complexity 3 44 0 576 311 24 19 chr11 88828889 88829101 -59954371 + MIR SINE MIR 49 261 -1 189 0 0 0 chr11 88829101 88829122 -59954350 + (TTA)n Simple_repeat Simple_repeat 1 21 0 338 256 11 0 chr11 88829122 88829212 -59954260 + MIR SINE MIR 162 252 -10 238 366 33 13 chr11 88829452 88829605 -59953867 + MIR3 SINE MIR 46 201 -7 258 32 0 0 chr11 88831034 88831065 -59952407 + (TC)n Simple_repeat Simple_repeat 2 32 0 222 37 0 0 chr11 88831064 88831091 -59952381 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 931 199 0 0 chr11 88831121 88831287 -59952185 + MER47A DNA MER2_type 3 168 -198 971 151 146 38 chr11 88831287 88831499 -59951973 + MER46A DNA MER2_type 1 235 -1 * 1167 119 57 19 chr11 88831499 88831691 -59951781 + MER47A DNA MER2_type 167 366 0 2024 235 34 30 chr11 88831699 88832256 -59951216 - L1ME3 LINE L1 -44 6118 5560 283 211 70 164 chr11 88832256 88832384 -59951088 - MLT1J LTR MaLR -395 116 1 2506 133 12 2 chr11 88832460 88832843 -59950629 + MER57A LTR ERV1 1 390 -13 2579 55 0 0 chr11 88832843 88833153 -59950319 - AluY SINE Alu -1 310 1 2506 133 12 2 chr11 88833153 88833168 -59950304 + MER57A LTR ERV1 390 403 0 636 273 26 16 chr11 88834114 88834308 -59949164 + MIR SINE MIR 62 257 -5 1446 195 186 14 chr11 88834475 88834759 -59948713 - LTR54B LTR ERV1 -6 492 258 282 29 0 0 chr11 88834759 88834794 -59948678 + (TC)n Simple_repeat Simple_repeat 2 36 0 1446 195 186 14 chr11 88834794 88834929 -59948543 - LTR54B LTR ERV1 -240 258 1 1866 132 10 7 chr11 88834971 88835275 -59948197 - L1MC1 LINE L1 -7 6326 6022 246 62 0 0 chr11 88835653 88835685 -59947787 + (TTTAG)n Simple_repeat Simple_repeat 4 35 0 820 301 108 10 chr11 88835936 88836458 -59947014 + L1ME3A LINE L1 5266 5853 -317 21 36 0 0 chr11 88836611 88836639 -59946833 + AT_rich Low_complexity Low_complexity 1 28 0 435 106 0 0 chr11 88836714 88836780 -59946692 + (CA)n Simple_repeat Simple_repeat 1 66 0 213 329 117 56 chr11 88837006 88837237 -59946235 - MIR SINE MIR -9 253 9 1809 132 28 56 chr11 88837976 88838295 -59945177 + AluJb SINE Alu 1 310 -2 305 152 0 0 chr11 88838653 88838699 -59944773 - L2 LINE L2 0 3272 3227 362 274 143 17 chr11 88838821 88838996 -59944476 - MER117 DNA MER1_type 0 197 1 312 27 0 0 chr11 88839534 88839571 -59943901 + (CA)n Simple_repeat Simple_repeat 1 37 0 194 273 0 91 chr11 88839695 88839772 -59943700 + L2 LINE L2 3186 3255 -17 188 370 29 72 chr11 88840393 88840879 -59942593 - L2 LINE L2 -342 2972 2508 251 246 211 41 chr11 88841192 88841363 -59942109 - MIR SINE MIR -62 200 1 355 339 39 8 chr11 88841773 88841900 -59941572 + MIR SINE MIR 54 184 -78 751 195 7 19 chr11 88841982 88842164 -59941308 - FRAM SINE Alu 0 166 1 1028 144 20 80 chr11 88842198 88842399 -59941073 - AluJb SINE Alu -123 189 1 218 317 148 0 chr11 88842458 88842559 -59940913 - L2 LINE L2 -5 3267 3152 180 225 25 0 chr11 88842707 88842747 -59940725 - MIR SINE MIR -133 75 35 566 359 74 27 chr11 88843182 88843547 -59939925 - L2 LINE L2 -571 2743 2362 306 252 168 15 chr11 88844413 88844544 -59938928 + MIR SINE MIR 95 245 -17 189 222 15 148 chr11 88845067 88845202 -59938270 - L3 LINE CR1 -8 1569 1453 273 300 77 8 chr11 88845427 88845557 -59937915 - MLT1I LTR MaLR -39 370 232 23 54 0 0 chr11 88846109 88846146 -59937326 + AT_rich Low_complexity Low_complexity 1 37 0 40671 33 22 2 chr11 88846146 88852155 -59931317 - L1PA2 LINE L1 -1 6154 22 1646 186 4 11 chr11 88852253 88852533 -59930939 + AluJb SINE Alu 21 298 -14 223 307 15 19 chr11 88852692 88852820 -59930652 - MIR SINE MIR -40 222 41 831 252 54 47 chr11 88852948 88853206 -59930266 + MIR SINE MIR 1 260 -2 498 248 87 13 chr11 88853305 88853454 -59930018 - MIR SINE MIR -66 196 37 211 216 189 27 chr11 88854731 88854805 -59928667 - MIR SINE MIR -72 190 105 240 278 120 37 chr11 88854852 88854960 -59928512 + L2 LINE L2 3154 3270 -2 235 309 103 0 chr11 88855517 88855585 -59927887 - L2 LINE L2 -13 3259 3185 413 317 90 0 chr11 88856222 88856389 -59927083 - MIR3 SINE MIR -25 183 2 437 320 23 17 chr11 88856739 88856911 -59926561 + MIR SINE MIR 6 178 -84 360 287 35 0 chr11 88857286 88857373 -59926099 + L2 LINE L2 3166 3255 -17 2442 84 7 0 chr11 88857549 88857859 -59925613 + AluSp SINE Alu 1 312 -1 22 0 0 0 chr11 88858139 88858161 -59925311 + AT_rich Low_complexity Low_complexity 1 22 0 405 206 0 37 chr11 88858850 88858986 -59924486 + G-rich Low_complexity Low_complexity 2 132 0 224 250 275 12 chr11 88859536 88859616 -59923856 + L2 LINE L2 3160 3260 -12 2197 92 0 0 chr11 88859973 88860293 -59923179 - AluY SINE Alu 0 320 1 202 234 0 16 chr11 88860296 88860360 -59923112 + (TTTA)n Simple_repeat Simple_repeat 3 65 0 526 189 150 26 chr11 88861063 88861216 -59922256 - L1MEc LINE L1 -3346 2869 2698 1510 235 52 29 chr11 88861228 88861880 -59921592 - L1MEc LINE L1 -3653 2562 1918 29 0 0 0 chr11 88862011 88862040 -59921432 + AT_rich Low_complexity Low_complexity 1 29 0 250 82 73 27 chr11 88862066 88862176 -59921296 + (TA)n Simple_repeat Simple_repeat 1 115 0 390 73 0 0 chr11 88862176 88862231 -59921241 + MLT2A1 LTR ERVL 390 444 0 192 49 66 33 chr11 88862231 88862292 -59921180 + (TA)n Simple_repeat Simple_repeat 1 63 0 2843 71 30 5 chr11 88862421 88862827 -59920645 - MLT2A1 LTR ERVL -28 416 1 3981 273 48 31 chr11 88862838 88864624 -59918848 - L1MEc LINE L1 -4543 1853 37 439 291 159 0 chr11 88865664 88865884 -59917588 - MIR SINE MIR -6 256 2 441 296 178 30 chr11 88866871 88867135 -59916337 + L3 LINE CR1 1257 1559 -18 21 57 0 0 chr11 88867523 88867558 -59915914 + AT_rich Low_complexity Low_complexity 1 35 0 471 252 156 15 chr11 88867603 88867873 -59915599 - L1ME4a LINE L1 -15 6106 5799 235 0 0 0 chr11 88868140 88868173 -59915299 - Alu SINE Alu -4 296 264 250 233 60 56 chr11 88868201 88868326 -59915146 - MIR SINE MIR -61 147 79 21 0 0 0 chr11 88868393 88868414 -59915058 + AT_rich Low_complexity Low_complexity 1 21 0 2159 125 3 0 chr11 88868568 88868864 -59914608 + AluSq SINE Alu 1 297 -16 206 159 0 23 chr11 88869158 88869202 -59914270 + (CTTTA)n Simple_repeat Simple_repeat 2 44 0 383 243 191 48 chr11 88870159 88870348 -59913124 + MIR SINE MIR 47 262 0 560 356 122 14 chr11 88870990 88871695 -59911777 + L2 LINE L2 1919 2699 -615 194 341 82 0 chr11 88872275 88872360 -59911112 - MIR SINE MIR -120 142 51 396 0 0 0 chr11 88872997 88873041 -59910431 + (CA)n Simple_repeat Simple_repeat 2 45 0 195 245 32 85 chr11 88873120 88873214 -59910258 - MIR SINE MIR -13 249 161 297 265 24 114 chr11 88873854 88874020 -59909452 + MIR3 SINE MIR 30 180 -28 315 206 119 24 chr11 88874038 88874164 -59909308 - MER103 DNA DNA -19 147 10 376 280 54 0 chr11 88874658 88874751 -59908721 - L2 LINE L2 -38 3234 3137 265 300 18 27 chr11 88875301 88875411 -59908061 - MIR SINE MIR -65 143 35 188 239 0 22 chr11 88875951 88875997 -59907475 - MIR SINE MIR -71 191 147 * 368 270 68 54 chr11 88875983 88876172 -59907300 + MIR SINE MIR 64 251 -11 2431 75 0 10 chr11 88876479 88876786 -59906686 + AluY SINE Alu 1 304 -7 2453 91 0 0 chr11 88877563 88877871 -59905601 + AluSc SINE Alu 1 308 -1 186 355 136 27 chr11 88878011 88878121 -59905351 + MIR SINE MIR 108 229 -33 2663 120 36 7 chr11 88878478 88878894 -59904578 + MSTA LTR MaLR 1 428 0 2231 120 7 0 chr11 88879330 88879629 -59903843 + AluSx SINE Alu 1 301 -11 930 262 71 62 chr11 88879699 88880165 -59903307 - MLT1J LTR MaLR 0 511 42 191 370 56 0 chr11 88880178 88880286 -59903186 + L2 LINE L2 2199 2312 -1002 328 344 16 8 chr11 88880569 88880697 -59902775 + L2 LINE L2 2932 3060 -212 366 23 0 0 chr11 88880856 88880899 -59902573 + (CA)n Simple_repeat Simple_repeat 1 43 0 204 371 194 0 chr11 88881098 88881273 -59902199 + MIR SINE MIR 48 256 -6 29 47 0 0 chr11 88881400 88881443 -59902029 + AT_rich Low_complexity Low_complexity 1 43 0 188 422 49 10 chr11 88882518 88882620 -59900852 + L2 LINE L2 3125 3230 -42 2054 151 3 0 chr11 88883079 88883383 -59900089 + AluJb SINE Alu 1 305 -7 605 300 157 41 chr11 88884232 88884883 -59898589 + L2 LINE L2 2544 3255 -17 319 307 110 18 chr11 88885254 88885417 -59898055 - MIR SINE MIR -29 233 56 1625 180 43 3 chr11 88885567 88885867 -59897605 + AluJo SINE Alu 1 312 0 324 0 0 0 chr11 88886222 88886258 -59897214 + (CA)n Simple_repeat Simple_repeat 2 37 0 586 192 30 60 chr11 88886269 88886351 -59897121 - MIR SINE MIR -25 237 161 513 224 91 12 chr11 88886351 88886516 -59896956 - MER104 DNA MER2_type 0 180 3 586 192 30 60 chr11 88886516 88886600 -59896872 - MIR SINE MIR -101 161 76 1174 213 10 110 chr11 88887343 88887761 -59895711 + L2 LINE L2 2933 3308 -5 246 330 27 36 chr11 88888386 88888498 -59894974 + L3 LINE CR1 1248 1358 -219 444 310 116 30 chr11 88888514 88888746 -59894726 - MIR SINE MIR -6 256 5 435 288 27 9 chr11 88889836 88889947 -59893525 - MIR SINE MIR -80 128 16 253 335 60 12 chr11 88890265 88890460 -59893012 - MIR SINE MIR -34 228 25 297 210 86 0 chr11 88890946 88891027 -59892445 + MIR SINE MIR 112 199 -63 187 314 0 0 chr11 88891121 88891172 -59892300 + L2 LINE L2 3211 3261 -11 809 201 135 8 chr11 88891318 88891562 -59891910 - MLT1D LTR MaLR -230 275 1 781 206 104 20 chr11 88891585 88891923 -59891549 - MLT1-int LTR MaLR -1191 180 4 266 327 157 33 chr11 88892152 88892305 -59891167 + MIR SINE MIR 16 187 -75 469 284 21 98 chr11 88892323 88892559 -59890913 - MIR SINE MIR -43 219 2 192 260 125 10 chr11 88893200 88893296 -59890176 - MIR3 SINE MIR -16 192 86 226 324 0 0 chr11 88893305 88893373 -59890099 - L2 LINE L2 -9 3263 3196 1051 202 62 29 chr11 88893482 88893725 -59889747 - MIR SINE MIR 0 262 12 571 298 45 10 chr11 88893973 88894171 -59889301 + MIR SINE MIR 6 210 -52 278 278 45 75 chr11 88894253 88894386 -59889086 + MIR3 SINE MIR 7 135 -73 3126 176 41 0 chr11 88894506 88895046 -59888426 - MER68 LTR ERV1 0 562 1 527 238 39 121 chr11 88895104 88895386 -59888086 - MIR SINE MIR 0 262 4 216 381 58 11 chr11 88895408 88895597 -59887875 - MIR SINE MIR -48 214 17 23 54 0 0 chr11 88896611 88896648 -59886824 + AT_rich Low_complexity Low_complexity 1 37 0 400 349 19 17 chr11 88898648 88898917 -59884555 + L3 LINE CR1 1243 1575 -2 24 32 0 0 chr11 88899175 88899206 -59884266 + AT_rich Low_complexity Low_complexity 1 31 0 247 171 171 36 chr11 88899289 88899400 -59884072 - L1ME4a LINE L1 -11 6110 5985 955 238 0 33 chr11 88899669 88899879 -59883593 - MIR SINE MIR -14 248 46 269 290 0 0 chr11 88900211 88900280 -59883192 - MIR SINE MIR -75 133 65 205 349 12 0 chr11 88900358 88900441 -59883031 - MIR SINE MIR -133 129 46 219 279 15 15 chr11 88900595 88900663 -59882809 - MIR SINE MIR -96 166 99 642 345 22 4 chr11 88900709 88900935 -59882537 - MIR SINE MIR -16 246 17 2226 112 26 0 chr11 88901011 88901314 -59882158 - AluSq SINE Alu -2 311 1 220 250 0 0 chr11 88902097 88902145 -59881327 - L2 LINE L2 0 3313 3266 23 0 0 0 chr11 88902642 88902665 -59880807 + AT_rich Low_complexity Low_complexity 1 23 0 418 258 118 22 chr11 88902856 88903034 -59880438 + MIR SINE MIR 13 207 -55 201 94 0 0 chr11 88903240 88903272 -59880200 + (TG)n Simple_repeat Simple_repeat 2 33 0 187 56 83 0 chr11 88903862 88903898 -59879574 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2055 100 0 28 chr11 88903904 88904194 -59879278 - AluSx SINE Alu -30 282 1 424 343 40 30 chr11 88904811 88905114 -59878358 + L2 LINE L2 2545 2850 -464 258 224 121 0 chr11 88905469 88905527 -59877945 + L2 LINE L2 3247 3311 -2 201 74 0 0 chr11 88905680 88905707 -59877765 + (GGAGA)n Simple_repeat Simple_repeat 4 30 0 5048 159 26 6 chr11 88906674 88907894 -59875578 - L1MB8 LINE L1 -5 6173 4932 1358 225 97 0 chr11 88907872 88908232 -59875240 - L1MB8 LINE L1 -1746 4400 4006 * 354 98 0 0 chr11 88908719 88908770 -59874702 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 215 336 88 35 chr11 88908792 88908905 -59874567 - L2 LINE L2 -20 3252 3134 236 196 33 109 chr11 88909031 88909123 -59874349 + MIR3 SINE MIR 13 97 -111 466 237 15 38 chr11 88909155 88909286 -59874186 + MER117 DNA MER1_type 1 128 -69 404 319 58 0 chr11 88910087 88910225 -59873247 - MIR SINE MIR -116 146 1 658 138 101 0 chr11 88911297 88911406 -59872066 - FLAM_C SINE Alu -22 121 2 248 202 135 30 chr11 88911407 88911502 -59871970 - MIR3 SINE MIR -42 166 100 211 268 146 41 chr11 88911799 88911922 -59871550 - L2 LINE L2 0 3272 3137 210 291 68 58 chr11 88912305 88912408 -59871064 + L2 LINE L2 3150 3253 -19 281 335 42 24 chr11 88912409 88912576 -59870896 - L2 LINE L2 -579 2735 2566 240 242 227 0 chr11 88912841 88912907 -59870565 - MIR SINE MIR -63 145 65 260 350 167 25 chr11 88913971 88914395 -59869077 - L2 LINE L2 -230 3042 2545 558 271 17 23 chr11 88914417 88914594 -59868878 + MER5A DNA MER1_type 12 187 -2 701 218 0 0 chr11 88915208 88915341 -59868131 - MIR SINE MIR -70 192 60 191 333 30 0 chr11 88917612 88917678 -59865794 - MIR SINE MIR -118 144 77 969 153 0 0 chr11 88918107 88918283 -59865189 + (TCTA)n Simple_repeat Simple_repeat 1 176 0 224 303 57 16 chr11 88919183 88919305 -59864167 - MIR SINE MIR -4 258 132 181 376 0 21 chr11 88919672 88919765 -59863707 + L2 LINE L2 3172 3262 -10 42617 49 5 4 chr11 88920182 88926323 -59857149 + L1PA4 LINE L1 13 6163 0 795 165 8 8 chr11 88926984 88927117 -59856355 + FLAM_A SINE Alu 1 133 0 205 254 68 0 chr11 88927452 88927511 -59855961 - MIR SINE MIR -12 250 188 336 24 0 0 chr11 88927729 88927770 -59855702 + (TG)n Simple_repeat Simple_repeat 2 42 0 189 0 0 0 chr11 88927992 88928013 -59855459 + (A)n Simple_repeat Simple_repeat 1 21 0 216 67 0 0 chr11 88928607 88928637 -59854835 + (GGGA)n Simple_repeat Simple_repeat 2 31 0 234 139 13 38 chr11 88929042 88929121 -59854351 + (TAAA)n Simple_repeat Simple_repeat 3 79 0 326 300 147 72 chr11 88929504 88929811 -59853661 - L2 LINE L2 0 3272 2943 1149 82 5 96 chr11 88929826 88929860 -59853612 - MLT2A1 LTR ERVL -1 443 407 414 0 0 0 chr11 88929860 88929906 -59853566 + (TA)n Simple_repeat Simple_repeat 2 47 0 1149 82 5 96 chr11 88929906 88929947 -59853525 - MLT2A1 LTR ERVL -37 407 364 204 0 54 27 chr11 88929947 88929984 -59853488 + (TA)n Simple_repeat Simple_repeat 2 39 0 1149 82 5 96 chr11 88929984 88930115 -59853357 - MLT2A1 LTR ERVL -80 364 255 520 263 29 2 chr11 88930222 88930376 -59853096 + L1ME LINE L1 5532 5671 -450 3056 223 29 27 chr11 88930461 88931394 -59852078 - L1M4 LINE L1 -2414 3732 2798 222 213 43 0 chr11 88931543 88931590 -59851882 - MIR SINE MIR -136 126 78 2069 132 26 0 chr11 88932194 88932498 -59850974 - AluSx SINE Alu 0 312 1 2333 217 85 24 chr11 88932992 88934000 -59849472 - L1ME2 LINE L1 -185 5979 4903 274 293 71 0 chr11 88934002 88934101 -59849371 - L2 LINE L2 -976 2338 2233 200 305 136 51 chr11 88934250 88934368 -59849104 - L2 LINE L2 -186 3086 2959 183 315 54 62 chr11 88936006 88936136 -59847336 - L2 LINE L2 -34 3279 3151 2837 257 80 72 chr11 88936181 88937617 -59845855 - L2 LINE L2 0 3313 1872 1007 250 32 0 chr11 88937618 88937834 -59845638 - MER58A DNA MER1_type -1 223 1 265 215 196 44 chr11 88937858 88938016 -59845456 - L2 LINE L2 -1459 1855 1674 207 200 0 0 chr11 88938596 88938641 -59844831 + A-rich Low_complexity Low_complexity 1 45 0 273 207 35 69 chr11 88938704 88938820 -59844652 - L1MC5 LINE L1 -24 7937 7826 2096 253 88 123 chr11 88938875 88940099 -59843373 - L1MC4a LINE L1 -223 7585 6405 1185 192 39 91 chr11 88940397 88940861 -59842611 - L1MC5 LINE L1 -371 7590 7151 924 163 70 53 chr11 88941786 88942013 -59841459 - L1MB8 LINE L1 -6 6172 5942 694 280 59 34 chr11 88942321 88942560 -59840912 + MIR SINE MIR 18 262 0 877 299 51 29 chr11 88944206 88944657 -59838815 - MARNA DNA Mariner -69 517 57 296 336 16 16 chr11 88944850 88944975 -59838497 + MIR3 SINE MIR 45 169 -39 386 306 62 14 chr11 88945210 88945354 -59838118 - MIR SINE MIR -51 211 61 183 80 0 0 chr11 88946656 88946681 -59836791 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 23 33 0 0 chr11 88947697 88947727 -59835745 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr11 88948387 88948409 -59835063 + AT_rich Low_complexity Low_complexity 1 22 0 255 276 9 57 chr11 88952816 88952921 -59830551 - MIR SINE MIR -57 205 106 205 265 121 12 chr11 88953082 88953165 -59830307 - MIR SINE MIR -9 253 162 481 235 13 105 chr11 88953169 88953264 -59830208 + MIR3 SINE MIR 67 144 -64 470 315 43 0 chr11 88953264 88953448 -59830024 + MER117 DNA MER1_type 2 193 -4 481 235 13 105 chr11 88953448 88953505 -59829967 + MIR3 SINE MIR 144 205 -3 326 176 27 0 chr11 88953933 88954007 -59829465 + A-rich Low_complexity Low_complexity 2 77 0 529 215 46 8 chr11 88954212 88954342 -59829130 + MIR SINE MIR 54 188 -74 306 407 37 0 chr11 88955016 88955124 -59828348 - L2 LINE L2 -19 3253 3142 608 314 70 12 chr11 88957255 88957497 -59825975 + L3 LINE CR1 1308 1563 -14 430 190 35 56 chr11 88959242 88959384 -59824088 - L1ME4a LINE L1 -22 6099 5961 21 71 0 0 chr11 88959416 88959458 -59824014 + AT_rich Low_complexity Low_complexity 1 42 0 280 324 34 0 chr11 88959557 88959705 -59823767 - L1ME LINE L1 -402 5719 5567 642 234 40 6 chr11 88960027 88960202 -59823270 - L1MEc LINE L1 -6156 240 60 303 239 68 0 chr11 88961831 88961919 -59821553 + L1MC4 LINE L1 6610 6703 -1339 2086 134 0 3 chr11 88961937 88962235 -59821237 - AluSq SINE Alu -16 297 1 222 167 343 10 chr11 88962415 88962517 -59820955 + MIR SINE MIR 39 174 -88 196 359 0 0 chr11 88962626 88962704 -59820768 + MIR SINE MIR 184 261 -1 615 318 28 36 chr11 88963796 88964048 -59819424 + MIR SINE MIR 13 262 0 265 228 59 69 chr11 88964318 88964419 -59819053 + L3b LINE CR1 1271 1370 -213 252 143 0 0 chr11 88965641 88965683 -59817789 + (TTCA)n Simple_repeat Simple_repeat 1 42 0 309 118 0 0 chr11 88965990 88966041 -59817431 + (T)n Simple_repeat Simple_repeat 1 51 0 307 362 43 14 chr11 88966501 88966642 -59816830 + MIR SINE MIR 16 160 -102 4100 210 31 21 chr11 88966669 88967640 -59815832 + Charlie1a DNA MER1_type 70 1050 -405 1065 179 72 16 chr11 88967671 88967978 -59815494 + Charlie1a DNA MER1_type 1131 1454 -1 1063 207 156 29 chr11 88968386 88968661 -59814811 - AluJb SINE Alu 0 312 3 840 286 120 47 chr11 88969206 88969671 -59813801 + L2 LINE L2 2815 3313 0 427 217 11 0 chr11 88969746 88969838 -59813634 + MSTD LTR MaLR 1 93 -303 356 242 205 19 chr11 88969842 88970003 -59813469 + MIR SINE MIR 58 248 -14 2414 107 43 3 chr11 88970048 88970394 -59813078 - THE1B LTR MaLR -4 360 1 235 333 0 0 chr11 88970758 88970821 -59812651 + L2 LINE L2 2995 3057 -215 275 290 0 0 chr11 88971428 88971490 -59811982 + L2 LINE L2 3252 3313 0 2099 108 0 7 chr11 88971541 88971851 -59811621 - AluSq SINE Alu 0 308 1 180 98 20 39 chr11 88973119 88973170 -59810302 + (TA)n Simple_repeat Simple_repeat 2 51 0 242 93 0 23 chr11 88974701 88974744 -59808728 + (TTCA)n Simple_repeat Simple_repeat 2 43 0 378 325 26 0 chr11 88974744 88974858 -59808614 - L2 LINE L2 0 3272 3156 316 312 32 0 chr11 88974897 88974990 -59808482 + MIR SINE MIR 84 179 -83 197 244 183 49 chr11 88974988 88975070 -59808402 + L2 LINE L2 3180 3272 0 * 324 0 0 0 chr11 88975235 88975271 -59808201 + (T)n Simple_repeat Simple_repeat 1 36 0 50 12 0 50 chr11 88975271 88975351 -59808121 + GC_rich Low_complexity Low_complexity 1 76 0 2351 87 0 0 chr11 88977208 88977497 -59805975 + AluSq SINE Alu 1 289 -24 189 0 0 0 chr11 88977611 88977632 -59805840 + (A)n Simple_repeat Simple_repeat 1 21 0 545 263 181 16 chr11 88977843 88978273 -59805199 + L1ME4a LINE L1 5522 6022 -99 1662 228 131 73 chr11 88978821 88979439 -59804033 - MLT1E1 LTR MaLR 0 654 1 466 299 81 0 chr11 88979549 88979723 -59803749 - MIR SINE MIR -55 207 20 2327 103 0 0 chr11 88979951 88980261 -59803211 + AluSg SINE Alu 1 310 0 1787 228 58 20 chr11 88980280 88980797 -59802675 - MLT1E3 LTR MaLR -35 589 19 2271 109 0 0 chr11 88980802 88981105 -59802367 - AluSx SINE Alu -4 308 6 713 11 0 0 chr11 88981167 88981254 -59802218 - L1PA2 LINE L1 -1 6154 6068 818 267 73 16 chr11 88981291 88981538 -59801934 + MIR SINE MIR 2 262 0 190 154 77 96 chr11 88981605 88981657 -59801815 + MIR SINE MIR 90 140 -68 1303 185 149 40 chr11 88981692 88982021 -59801451 - MLT1A1 LTR MaLR 0 365 1 407 246 173 11 chr11 88982451 88982642 -59800830 - MIR SINE MIR -10 252 31 252 344 66 8 chr11 88982819 88982941 -59800531 + MIR3 SINE MIR 37 165 -43 281 215 0 46 chr11 88983036 88983101 -59800371 + MER91B DNA MER1_type 12 73 -117 276 321 152 18 chr11 88983113 88983278 -59800194 + L3 LINE CR1 1303 1489 -88 268 277 96 45 chr11 88983348 88983450 -59800022 + MIR SINE MIR 77 193 -69 189 0 0 0 chr11 88983450 88983471 -59800001 + (TG)n Simple_repeat Simple_repeat 2 22 0 268 277 96 45 chr11 88983471 88983545 -59799927 + MIR SINE MIR 193 262 0 1907 204 35 35 chr11 88984364 88984825 -59798647 + MER31B LTR ERV1 6 466 0 1943 149 33 0 chr11 88985232 88985534 -59797938 - AluSx SINE Alu 0 312 1 191 364 74 16 chr11 88985785 88985906 -59797566 + L2 LINE L2 3139 3266 -47 252 208 0 0 chr11 88986926 88986979 -59796493 + LTR66 LTR ERVL 394 446 -164 364 209 0 12 chr11 88986984 88987512 -59795960 + (TA)n Simple_repeat Simple_repeat 1 521 0 267 292 42 0 chr11 88988259 88988331 -59795141 - L2 LINE L2 -4 3309 3235 238 366 71 9 chr11 88988416 88988528 -59794944 - L2 LINE L2 -299 2973 2855 305 330 90 92 chr11 88989210 88989556 -59793916 + L2 LINE L2 2923 3267 -5 289 352 135 21 chr11 88989575 88989902 -59793570 + L3 LINE CR1 1196 1559 -18 613 331 152 34 chr11 88992540 88993299 -59790173 + L2 LINE L2 2357 3211 -102 217 204 0 41 chr11 88993618 88993667 -59789805 - L2 LINE L2 0 3272 3226 205 186 0 23 chr11 88993914 88993957 -59789515 + GA-rich Low_complexity Low_complexity 2 43 0 2405 154 27 2 chr11 88994110 88994558 -59788914 - L1MA4 LINE L1 -11 6289 5831 2376 77 0 26 chr11 88994738 88995051 -59788421 - AluSp SINE Alu -8 305 1 230 307 83 91 chr11 88995245 88995509 -59787963 + L2 LINE L2 2966 3227 -45 23 33 0 0 chr11 88996184 88996214 -59787258 + AT_rich Low_complexity Low_complexity 1 30 0 577 245 51 9 chr11 88996224 88996440 -59787032 + L1MB8 LINE L1 5933 6157 -21 360 246 24 102 chr11 88997235 88997402 -59786070 - L2 LINE L2 0 3313 3160 502 301 110 18 chr11 88997419 88997638 -59785834 - MIR SINE MIR -13 249 11 262 290 11 0 chr11 88997787 88997880 -59785592 + (TA)n Simple_repeat Simple_repeat 1 94 0 2066 140 48 25 chr11 88999019 88999375 -59784097 + THE1B LTR MaLR 1 364 0 11420 99 11 0 chr11 88999375 89000938 -59782534 + THE1B-int LTR MaLR 1 1580 0 1988 143 48 31 chr11 89000938 89001296 -59782176 + THE1B LTR MaLR 1 364 0 401 256 116 8 chr11 89001339 89001468 -59782004 + MIR SINE MIR 10 145 -63 264 326 16 39 chr11 89001724 89001853 -59781619 + L2 LINE L2 2855 2980 -292 625 366 160 9 chr11 89001914 89002476 -59780996 + L3 LINE CR1 903 1549 -28 2865 158 35 2 chr11 89003417 89003897 -59779575 - MER44D DNA MER2_type 0 605 55 1617 239 55 43 chr11 89004097 89004608 -59778864 + LTR40a LTR ERVL 3 519 0 474 262 152 0 chr11 89004708 89004853 -59778619 - MIR SINE MIR 0 262 96 204 393 74 8 chr11 89004863 89004985 -59778487 + L2 LINE L2 2930 3059 -213 261 75 0 0 chr11 89005633 89005673 -59777799 + (TC)n Simple_repeat Simple_repeat 1 40 0 249 33 0 0 chr11 89005673 89005703 -59777769 + (TA)n Simple_repeat Simple_repeat 1 30 0 396 0 0 0 chr11 89005822 89005866 -59777606 + (TC)n Simple_repeat Simple_repeat 1 44 0 351 0 0 0 chr11 89005865 89005904 -59777568 + (CA)n Simple_repeat Simple_repeat 1 39 0 * 295 192 0 0 chr11 89005904 89005979 -59777493 - Alu SINE Alu -251 51 1 432 223 173 0 chr11 89006174 89006313 -59777159 - MIR SINE MIR -12 250 88 372 279 41 0 chr11 89007140 89007262 -59776210 + MIR SINE MIR 136 262 0 22 0 0 0 chr11 89007262 89007284 -59776188 + AT_rich Low_complexity Low_complexity 1 22 0 253 350 0 0 chr11 89008032 89008112 -59775360 + (CA)n Simple_repeat Simple_repeat 1 80 0 1390 212 17 10 chr11 89008324 89008612 -59774860 - AluJo SINE Alu -18 294 5 411 310 23 46 chr11 89008758 89008932 -59774540 + MIR3 SINE MIR 34 203 -5 1144 124 82 0 chr11 89010071 89010265 -59773207 + L1MA5A LINE L1 6068 6277 -20 224 285 62 62 chr11 89010430 89010560 -59772912 - L2 LINE L2 -24 3289 3160 21 36 0 0 chr11 89012205 89012233 -59771239 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr11 89012922 89012961 -59770511 + AT_rich Low_complexity Low_complexity 1 39 0 398 302 44 78 chr11 89012989 89013194 -59770278 - L2 LINE L2 -42 3230 3033 1168 190 113 15 chr11 89013653 89014027 -59769445 + MSTB LTR MaLR 1 457 0 609 221 268 16 chr11 89014122 89014312 -59769160 - MIR SINE MIR -24 238 1 532 320 126 28 chr11 89014369 89014910 -59768562 - L2 LINE L2 -965 2349 1756 195 276 52 0 chr11 89015000 89015058 -59768414 + MIR SINE MIR 126 186 -76 32 26 0 0 chr11 89015181 89015220 -59768252 + AT_rich Low_complexity Low_complexity 1 39 0 2793 161 9 33 chr11 89015305 89015875 -59767597 - L1MB8 LINE L1 -9 6169 5614 2065 140 0 3 chr11 89015894 89016201 -59767271 - AluSx SINE Alu -6 306 1 258 213 0 0 chr11 89019280 89019327 -59764145 + MIR3 SINE MIR 113 159 -49 467 293 104 24 chr11 89019552 89019716 -59763756 + MER91A DNA MER1_type 18 194 -2 512 330 128 4 chr11 89020208 89020435 -59763037 - MIR SINE MIR 0 262 8 206 177 32 32 chr11 89020438 89020500 -59762972 + (TCTA)n Simple_repeat Simple_repeat 1 62 0 466 260 260 0 chr11 89020607 89020761 -59762711 + MIR SINE MIR 18 211 -51 268 337 45 11 chr11 89020856 89020945 -59762527 - L2 LINE L2 -33 3280 3189 394 303 42 0 chr11 89021022 89021141 -59762331 + MIR SINE MIR 132 255 -7 197 375 19 10 chr11 89021497 89021601 -59761871 + MIR SINE MIR 21 125 -137 193 280 120 32 chr11 89021900 89022025 -59761447 + MIR SINE MIR 81 216 -46 395 237 51 102 chr11 89022877 89023054 -59760418 - MIR SINE MIR -75 187 20 418 385 104 20 chr11 89023241 89023683 -59759789 + L2 LINE L2 2497 2975 -339 807 245 109 37 chr11 89024632 89025007 -59758465 + MER93a LTR ERV1 1 402 0 238 392 41 0 chr11 89025092 89025189 -59758283 + L2 LINE L2 3155 3255 -17 26 50 0 0 chr11 89026157 89026197 -59757275 + AT_rich Low_complexity Low_complexity 1 40 0 1293 313 126 11 chr11 89026756 89027604 -59755868 - L2 LINE L2 0 3313 2356 895 252 34 6 chr11 89028193 89028436 -59755036 + MIR SINE MIR 14 257 -5 297 286 155 25 chr11 89029389 89029550 -59753922 + MIR SINE MIR 76 257 -5 663 281 61 87 chr11 89030166 89030658 -59752814 + MLT1J LTR MaLR 33 511 0 2435 71 0 0 chr11 89031819 89032114 -59751358 - AluY SINE Alu -15 296 2 202 191 71 0 chr11 89032242 89032284 -59751188 + L2 LINE L2 3228 3272 0 949 165 23 0 chr11 89033915 89034091 -59749381 + MER96B DNA MER1_type? 238 417 0 405 289 142 11 chr11 89035413 89035603 -59747869 + MIR SINE MIR 48 262 0 21 0 0 0 chr11 89036645 89036666 -59746806 + AT_rich Low_complexity Low_complexity 1 21 0 2538 56 0 3 chr11 89036807 89037112 -59746360 + AluY SINE Alu 1 304 -7 741 279 76 47 chr11 89037191 89037808 -59745664 + L1ME4a LINE L1 5271 5905 -216 206 277 15 15 chr11 89037927 89037992 -59745480 + GA-rich Low_complexity Low_complexity 5 69 0 213 94 0 0 chr11 89038199 89038231 -59745241 + (TTCA)n Simple_repeat Simple_repeat 2 33 0 373 284 133 38 chr11 89039948 89040159 -59743313 - MIR SINE MIR 0 262 32 472 310 129 9 chr11 89040273 89040505 -59742967 + MIR SINE MIR 2 261 -1 740 161 31 52 chr11 89040639 89040832 -59742640 + MER53 DNA DNA 1 189 0 28 29 0 0 chr11 89040945 89040980 -59742492 + AT_rich Low_complexity Low_complexity 1 35 0 1846 154 7 14 chr11 89040980 89041273 -59742199 - AluSx SINE Alu -19 293 3 257 308 8 0 chr11 89041833 89041953 -59741519 + L1ME4a LINE L1 5804 5924 -197 384 218 185 28 chr11 89042102 89042313 -59741159 + L1ME4a LINE L1 5820 6063 -58 26 0 0 0 chr11 89042313 89042339 -59741133 + AT_rich Low_complexity Low_complexity 1 26 0 1051 120 27 22 chr11 89042347 89042451 -59741021 + L1MA9 LINE L1 6124 6231 -81 2116 108 111 15 chr11 89042451 89042783 -59740689 + THE1B LTR MaLR 1 364 0 1051 120 27 22 chr11 89042783 89042862 -59740610 + L1MA9 LINE L1 6231 6308 -4 581 325 57 0 chr11 89043371 89043599 -59739873 + MIR SINE MIR 8 248 -14 445 147 0 0 chr11 89043832 89043907 -59739565 + L1PB1 LINE L1 6069 6143 -8 891 182 13 0 chr11 89044717 89044876 -59738596 + AluSg/x SINE Alu 143 303 -9 351 0 0 0 chr11 89045388 89045427 -59738045 + (TG)n Simple_repeat Simple_repeat 2 40 0 442 43 29 14 chr11 89045481 89045550 -59737922 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 1838 162 13 0 chr11 89045561 89045869 -59737603 - AluSx SINE Alu 0 312 1 314 279 44 82 chr11 89045919 89046102 -59737370 - MER5B DNA MER1_type 0 178 3 781 241 163 0 chr11 89047207 89047410 -59736062 - MIR SINE MIR -24 238 3 706 249 96 0 chr11 89048264 89048461 -59735011 + MIR SINE MIR 6 221 -41 313 280 133 28 chr11 89048490 89048633 -59734839 + MIR SINE MIR 105 262 0 187 280 194 21 chr11 89049089 89049182 -59734290 - MIR SINE MIR -85 177 69 845 154 3 0 chr11 89049182 89049332 -59734140 - L1MA9 LINE L1 -143 6148 5995 322 262 183 16 chr11 89049626 89049752 -59733720 + MIR SINE MIR 66 212 -50 2070 131 7 0 chr11 89049894 89050199 -59733273 + AluSq SINE Alu 1 307 -6 304 292 83 0 chr11 89050331 89050427 -59733045 + L2 LINE L2 2987 3090 -182 231 303 40 30 chr11 89050718 89050817 -59732655 + L1ME4a LINE L1 5513 5612 -509 1377 268 147 35 chr11 89050829 89051644 -59731828 - L2 LINE L2 -4 3309 2388 1804 168 0 7 chr11 89051644 89051936 -59731536 + AluJb SINE Alu 1 290 -22 1377 268 147 35 chr11 89051936 89052052 -59731420 - L2 LINE L2 -925 2388 2286 765 229 145 24 chr11 89052135 89052472 -59731000 + L1ME4a LINE L1 5742 6119 -2 1797 125 39 39 chr11 89052847 89053159 -59730313 + MER1B DNA MER1_type 28 339 0 771 260 77 12 chr11 89054678 89054924 -59728548 - MIR SINE MIR 0 262 1 591 216 183 20 chr11 89054992 89055247 -59728225 + LTR28 LTR ERV1 1 348 -672 * 1402 194 62 52 chr11 89055246 89055670 -59727802 + MLT2A2 LTR ERVL 103 549 -5 * 3085 176 105 0 chr11 89055669 89056233 -59727239 + LTR28 LTR ERV1 398 1020 0 1133 350 42 21 chr11 89057086 89057740 -59725732 + L2 LINE L2 2645 3313 0 209 364 33 26 chr11 89058426 89058577 -59724895 + MIR3 SINE MIR 47 198 -10 340 331 38 32 chr11 89059154 89059311 -59724161 - MIR SINE MIR -58 204 47 370 279 66 25 chr11 89059323 89059445 -59724027 + MIR SINE MIR 28 154 -108 250 369 20 27 chr11 89059664 89059813 -59723659 + L2 LINE L2 2915 3062 -210 210 270 95 27 chr11 89060260 89060334 -59723138 + L2 LINE L2 3229 3307 -6 905 244 25 0 chr11 89060671 89060872 -59722600 - MIR SINE MIR -3 259 54 486 291 41 36 chr11 89061031 89061227 -59722245 + MIR SINE MIR 60 256 -6 790 301 22 36 chr11 89065525 89065887 -59717585 - L1ME4a LINE L1 -289 5832 5476 4709 204 30 7 chr11 89066215 89067624 -59715848 - L1MA9 LINE L1 -39 6273 4826 323 269 0 177 chr11 89068026 89068122 -59715350 - L2 LINE L2 -1 3271 3206 1005 233 16 8 chr11 89068122 89068380 -59715092 - MIR SINE MIR 0 262 3 323 269 0 177 chr11 89068380 89068424 -59715048 - L2 LINE L2 -66 3206 3156 399 268 35 83 chr11 89068563 89068791 -59714681 - MIR SINE MIR 0 262 46 2337 100 3 0 chr11 89069145 89069454 -59714018 - AluSq SINE Alu -3 310 1 21 0 0 0 chr11 89069643 89069664 -59713808 + AT_rich Low_complexity Low_complexity 1 21 0 506 338 61 10 chr11 89070110 89070308 -59713164 + MIR SINE MIR 2 209 -53 26 74 0 0 chr11 89071417 89071471 -59712001 + AT_rich Low_complexity Low_complexity 1 54 0 180 352 125 0 chr11 89072120 89072208 -59711264 + L2 LINE L2 3158 3256 -16 226 176 0 59 chr11 89072359 89072410 -59711062 - L2 LINE L2 -2 3311 3264 244 193 136 57 chr11 89072608 89072696 -59710776 + Charlie7 DNA MER1_type 1 95 -2517 458 262 11 66 chr11 89073241 89073424 -59710048 - MER5B DNA MER1_type -2 176 4 234 272 32 114 chr11 89073474 89073632 -59709840 + MIR SINE MIR 48 192 -70 426 243 92 26 chr11 89074072 89074224 -59709248 + MER103 DNA DNA 2 163 -3 296 307 33 40 chr11 89074284 89074434 -59709038 - MIR3 SINE MIR -48 160 12 22 0 0 0 chr11 89074983 89075005 -59708467 + AT_rich Low_complexity Low_complexity 1 22 0 384 346 127 19 chr11 89075316 89075631 -59707841 + L3 LINE CR1 1215 1563 -14 258 32 0 0 chr11 89078141 89078172 -59705300 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 390 321 36 29 chr11 89078461 89078601 -59704871 + MIR SINE MIR 2 142 -120 1291 175 64 85 chr11 89079635 89080024 -59703448 + MLT1B LTR MaLR 10 390 0 216 0 0 0 chr11 89081011 89081035 -59702437 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 1890 125 29 4 chr11 89081038 89081318 -59702154 - AluSx SINE Alu -25 287 1 6550 147 44 18 chr11 89081485 89082685 -59700787 + Tigger3b DNA MER2_type 1 1231 0 21 36 0 0 chr11 89083003 89083031 -59700441 + AT_rich Low_complexity Low_complexity 1 28 0 473 0 18 0 chr11 89083761 89083818 -59699654 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 186 143 0 0 chr11 89084149 89084184 -59699288 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 1366 138 45 19 chr11 89084278 89084547 -59698925 - L1MA4 LINE L1 -1 6299 6024 4601 118 9 3 chr11 89084920 89085615 -59697857 - L1PA11 LINE L1 0 6174 5476 7697 25 0 0 chr11 89085643 89086709 -59696763 - L1PA3 LINE L1 -3 6152 5087 5615 30 0 0 chr11 89086710 89087378 -59696094 + L1PA3 LINE L1 4423 5090 -1056 2575 130 14 16 chr11 89087376 89087940 -59695532 - L1PA11 LINE L1 -685 5489 4927 * 1714 126 66 0 chr11 89087942 89088228 -59695244 - L1PA11 LINE L1 -1427 4719 4415 435 288 80 86 chr11 89088316 89088629 -59694843 + L2 LINE L2 3003 3313 0 217 171 24 0 chr11 89091096 89091137 -59692335 + CT-rich Low_complexity Low_complexity 4 45 0 1300 212 28 40 chr11 89091359 89091685 -59691787 + MLT1C LTR MaLR 1 322 -145 525 354 20 78 chr11 89091742 89092137 -59691335 - L2 LINE L2 -5 3267 2896 279 359 103 41 chr11 89092304 89092691 -59690781 - L2 LINE L2 -1779 1535 1125 249 214 18 0 chr11 89092787 89092843 -59690629 + L2 LINE L2 3257 3313 0 693 191 0 22 chr11 89093979 89094115 -59689357 - FLAM_A SINE Alu 0 133 1 2036 208 35 20 chr11 89094277 89094733 -59688739 - MLT1C LTR MaLR -4 463 1 6497 138 17 5 chr11 89095096 89096701 -59686771 + L1MA1 LINE L1 4682 6302 0 29 0 0 0 chr11 89096702 89096731 -59686741 + AT_rich Low_complexity Low_complexity 1 29 0 2261 105 20 7 chr11 89097036 89097342 -59686130 + AluSx SINE Alu 3 312 0 2031 95 0 15 chr11 89097467 89097741 -59685731 + AluSx SINE Alu 37 306 -6 31 26 0 0 chr11 89097857 89097895 -59685577 + AT_rich Low_complexity Low_complexity 1 38 0 12956 218 41 14 chr11 89097904 89101819 -59681653 + L1MA4A LINE L1 1 4022 -2826 237 204 20 0 chr11 89101820 89101869 -59681603 - THE1A LTR MaLR 0 355 306 6814 125 11 39 chr11 89101869 89102972 -59680500 - THE1C-int LTR MaLR -506 1074 3 1971 142 32 45 chr11 89102974 89103354 -59680118 - THE1C LTR MaLR 0 375 1 4890 194 99 43 chr11 89103354 89106258 -59677214 + L1MA4A LINE L1 4019 6996 -6 24 32 0 0 chr11 89106553 89106584 -59676888 + AT_rich Low_complexity Low_complexity 1 31 0 430 302 35 29 chr11 89107302 89107474 -59675998 + MIR SINE MIR 35 207 -55 201 158 0 0 chr11 89108495 89108533 -59674939 + T-rich Low_complexity Low_complexity 1 38 0 198 265 0 0 chr11 89108591 89108640 -59674832 + L2 LINE L2 3265 3313 0 437 292 66 66 chr11 89109331 89109574 -59673898 - MIR SINE MIR -14 248 6 1483 177 42 35 chr11 89109875 89110183 -59673289 - AluJo SINE Alu 0 310 1 21 0 0 0 chr11 89110656 89110677 -59672795 + AT_rich Low_complexity Low_complexity 1 21 0 1598 209 3 3 chr11 89110770 89111090 -59672382 + AluJb SINE Alu 1 320 0 33 0 0 0 chr11 89111457 89111490 -59671982 + AT_rich Low_complexity Low_complexity 1 33 0 330 309 250 29 chr11 89112363 89112635 -59670837 - L3 LINE CR1 -5 1572 1241 388 321 30 8 chr11 89112637 89112771 -59670701 - MIR3 SINE MIR -28 180 44 285 310 40 0 chr11 89112792 89112892 -59670580 - L3 LINE CR1 -321 1256 1153 2217 125 0 0 chr11 89113168 89113472 -59670000 + AluSg SINE Alu 1 304 -6 319 287 161 23 chr11 89114131 89114305 -59669167 - MIR SINE MIR -15 247 50 539 231 48 123 chr11 89114878 89114956 -59668516 - MIR SINE MIR -12 250 168 6413 94 62 2 chr11 89114956 89116284 -59667188 - L1PA11 LINE L1 -9 6165 4801 539 231 48 123 chr11 89116284 89116474 -59666998 - MIR SINE MIR -94 168 2 320 296 40 68 chr11 89116525 89116701 -59666771 - L2 LINE L2 -221 3051 2881 313 114 0 0 chr11 89117376 89117420 -59666052 - MIR SINE MIR -16 246 203 540 318 60 37 chr11 89117433 89117836 -59665636 - L1M4c LINE L1 -4788 1596 1185 908 243 124 50 chr11 89117888 89118427 -59665045 + L1MC5 LINE L1 6953 7531 -430 259 251 31 74 chr11 89118542 89118759 -59664713 + L1ME3 LINE L1 5965 6170 0 2132 177 53 22 chr11 89119096 89119549 -59663923 + MLT1C LTR MaLR 1 467 0 203 221 29 44 chr11 89119880 89119948 -59663524 + (TATATG)n Simple_repeat Simple_repeat 5 71 0 * 231 190 0 35 chr11 89119898 89119956 -59663516 + (TA)n Simple_repeat Simple_repeat 2 57 0 186 71 0 0 chr11 89119968 89119996 -59663476 + (CATA)n Simple_repeat Simple_repeat 3 30 0 412 323 0 26 chr11 89120677 89120832 -59662640 - MIR SINE MIR 0 262 112 2146 88 39 0 chr11 89121341 89121626 -59661846 - AluSp SINE Alu -15 298 3 1184 173 17 9 chr11 89123137 89123368 -59660104 + Tigger2 DNA MER2_type 1 233 -2485 1903 158 48 20 chr11 89123368 89123723 -59659749 + Tigger2 DNA MER2_type 2352 2716 -2 2836 197 55 24 chr11 89123948 89124624 -59658848 + L1MA7 LINE L1 5595 6291 0 1848 109 63 20 chr11 89124750 89125052 -59658420 - THE1B LTR MaLR -49 315 1 195 391 54 0 chr11 89125991 89126083 -59657389 - MIR3 SINE MIR -6 202 106 312 344 70 16 chr11 89126337 89126465 -59657007 + MIR SINE MIR 22 156 -106 359 338 99 70 chr11 89128241 89128584 -59654888 + L2 LINE L2 2920 3272 0 265 325 13 70 chr11 89129343 89129500 -59653972 + L2 LINE L2 2910 3057 -215 186 191 0 0 chr11 89129563 89129605 -59653867 + (TA)n Simple_repeat Simple_repeat 2 43 0 190 333 45 15 chr11 89129664 89129730 -59653742 + L2 LINE L2 3137 3204 -68 234 266 63 0 chr11 89129730 89129809 -59653663 + MIR SINE MIR 79 162 -100 196 185 93 37 chr11 89129794 89129848 -59653624 - MIR SINE MIR -82 180 124 * 13405 142 38 27 chr11 89131304 89133337 -59650135 + Tigger1 DNA MER2_type 1 2065 -353 2172 109 10 6 chr11 89133337 89133463 -59650009 + AluSp SINE Alu 1 125 -188 257 68 23 0 chr11 89133463 89133507 -59649965 + (CAAA)n Simple_repeat Simple_repeat 4 48 0 2172 109 10 6 chr11 89133507 89133692 -59649780 + AluSp SINE Alu 125 313 0 13405 142 38 27 chr11 89133692 89134047 -59649425 + Tigger1 DNA MER2_type 2065 2415 -3 362 274 91 38 chr11 89134613 89134799 -59648673 - L3 LINE CR1 -106 1471 1276 587 223 98 57 chr11 89134811 89135004 -59648468 - L2 LINE L2 -2 3311 3111 1492 334 147 7 chr11 89135029 89135804 -59647668 - L2 LINE L2 -339 2975 2092 227 293 0 49 chr11 89137191 89137273 -59646199 + L2 LINE L2 3187 3264 -8 1350 89 15 0 chr11 89137544 89137747 -59645725 - L1PA13 LINE L1 0 6163 5958 1576 92 9 0 chr11 89137747 89138063 -59645409 + L1P4 LINE L1 5162 5479 -684 2397 123 15 0 chr11 89138264 89138606 -59644866 - THE1C LTR MaLR -2 373 27 9517 27 1 0 chr11 89138798 89140703 -59642769 - L1PA2 LINE L1 0 6155 4250 870 267 75 47 chr11 89140708 89141135 -59642337 - L1MC4a LINE L1 -1982 5826 5388 326 323 24 8 chr11 89141159 89141283 -59642189 - L1MC4a LINE L1 -914 5232 5107 25 31 0 0 chr11 89141284 89141316 -59642156 + AT_rich Low_complexity Low_complexity 1 32 0 2128 154 31 14 chr11 89141334 89141692 -59641780 + THE1B LTR MaLR 1 364 0 262 322 33 0 chr11 89141693 89141783 -59641689 - L1MC4a LINE L1 -1167 4979 4887 22 35 0 0 chr11 89141874 89141903 -59641569 + AT_rich Low_complexity Low_complexity 1 29 0 33 66 0 0 chr11 89142023 89142084 -59641388 + AT_rich Low_complexity Low_complexity 1 61 0 522 46 0 0 chr11 89142202 89142267 -59641205 - L1PA10 LINE L1 -16 6152 6088 1737 92 12 0 chr11 89142267 89142517 -59640955 + L1PA10 LINE L1 5798 6050 -118 353 196 13 46 chr11 89142674 89142827 -59640645 + (TTAA)n Simple_repeat Simple_repeat 3 150 0 1071 169 0 15 chr11 89142955 89143156 -59640316 - L1PA13 LINE L1 -3 6160 5963 221 310 0 0 chr11 89143568 89143626 -59639846 + CT-rich Low_complexity Low_complexity 2 59 0 532 249 178 14 chr11 89143641 89143854 -59639618 + MIR SINE MIR 2 249 -13 770 346 79 55 chr11 89144875 89145673 -59637799 + L3 LINE CR1 682 1498 -79 260 123 0 53 chr11 89145815 89145872 -59637600 - MADE1 DNA Mariner 0 80 27 22 0 0 0 chr11 89145937 89145959 -59637513 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr11 89147726 89147750 -59635722 + (TAA)n Simple_repeat Simple_repeat 1 24 0 249 361 66 33 chr11 89149421 89149665 -59633807 - L2 LINE L2 -217 3055 2804 5402 44 7 0 chr11 89149880 89150565 -59632907 - L1PA4 LINE L1 -773 5373 4684 6690 31 2 0 chr11 89150565 89151362 -59632110 + L1PA4 LINE L1 5355 6154 -1 269 231 33 33 chr11 89151819 89151910 -59631562 + (TA)n Simple_repeat Simple_repeat 2 92 0 1677 87 11 32 chr11 89152006 89152315 -59631157 + L1P4 LINE L1 5222 5523 -638 437 227 58 58 chr11 89152783 89152990 -59630482 + L1ME LINE L1 5611 5817 -304 2607 153 22 7 chr11 89152990 89153446 -59630026 + L1PA16 LINE L1 5701 6163 -3 265 272 129 127 chr11 89153681 89153919 -59629553 - MIR SINE MIR -6 256 20 383 270 53 30 chr11 89154084 89154234 -59629238 + MIR SINE MIR 12 169 -39 417 54 0 0 chr11 89155665 89155721 -59627751 + (TG)n Simple_repeat Simple_repeat 1 56 0 197 95 0 24 chr11 89155754 89155796 -59627676 + (TG)n Simple_repeat Simple_repeat 1 41 0 186 43 0 0 chr11 89155795 89155818 -59627654 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 315 0 0 0 chr11 89155831 89155866 -59627606 + (TG)n Simple_repeat Simple_repeat 1 35 0 812 283 165 28 chr11 89157319 89157920 -59625552 - L2 LINE L2 -264 3008 2330 228 296 0 0 chr11 89157986 89158030 -59625442 - L2 LINE L2 -16 3256 3213 299 336 38 28 chr11 89158716 89158927 -59624545 + L2 LINE L2 2442 2654 -660 243 330 17 57 chr11 89159098 89159274 -59624198 - Charlie8 DNA MER1_type -2164 253 85 619 257 44 11 chr11 89159300 89159483 -59623989 - LTR16B LTR ERVL 0 464 276 334 282 100 47 chr11 89159515 89159685 -59623787 - LTR16B LTR ERVL -285 179 1 226 269 0 39 chr11 89159706 89159758 -59623714 - Charlie8 DNA MER1_type -2364 53 4 227 385 92 30 chr11 89160085 89160389 -59623083 + L2 LINE L2 2945 3267 -5 340 340 70 0 chr11 89160524 89160624 -59622848 - L2 LINE L2 -25 3247 3141 2066 96 48 0 chr11 89160860 89161151 -59622321 - AluY SINE Alu -6 305 1 291 122 0 0 chr11 89161151 89161200 -59622272 + (T)n Simple_repeat Simple_repeat 1 49 0 2652 45 0 3 chr11 89161338 89161650 -59621822 - AluY SINE Alu 0 311 1 2129 136 3 0 chr11 89161828 89162123 -59621349 + AluSx SINE Alu 1 296 -16 211 152 43 0 chr11 89162604 89162650 -59620822 + (CA)n Simple_repeat Simple_repeat 1 48 0 452 244 128 6 chr11 89162916 89163080 -59620392 + MIR SINE MIR 65 248 -14 2320 96 3 0 chr11 89164636 89164938 -59618534 - AluSp SINE Alu -10 303 1 269 202 101 93 chr11 89165853 89165982 -59617490 - L2 LINE L2 -1387 1927 1798 292 225 101 25 chr11 89166316 89166526 -59616946 + L1ME LINE L1 5267 5484 -642 339 335 52 21 chr11 89166532 89166723 -59616749 + L2 LINE L2 3117 3313 0 371 303 97 10 chr11 89166731 89166926 -59616546 + L1ME LINE L1 5507 5718 -403 1080 191 11 5 chr11 89167191 89167379 -59616093 - MLT1C LTR MaLR -45 422 234 646 225 7 0 chr11 89167384 89167522 -59615950 - FLAM_C SINE Alu -4 139 1 1030 167 66 35 chr11 89167523 89167750 -59615722 - MLT1C LTR MaLR -233 234 1 453 284 33 33 chr11 89167751 89167934 -59615538 + L2 LINE L2 3130 3312 -1 242 224 0 0 chr11 89170280 89170338 -59613134 - L1MC4 LINE L1 -1345 6697 6640 222 91 0 0 chr11 89170355 89170388 -59613084 + (CA)n Simple_repeat Simple_repeat 2 34 0 204 179 0 0 chr11 89171184 89171223 -59612249 + (CATATA)n Simple_repeat Simple_repeat 2 40 0 189 0 0 0 chr11 89171296 89171317 -59612155 + (TTCA)n Simple_repeat Simple_repeat 4 24 0 436 403 8 34 chr11 89172356 89172624 -59610848 - L2 LINE L2 -19 3253 2993 258 81 0 0 chr11 89173409 89173446 -59610026 + (TTC)n Simple_repeat Simple_repeat 3 39 0 674 224 0 0 chr11 89173449 89173565 -59609907 - FLAM_A SINE Alu -16 117 2 294 233 60 98 chr11 89173656 89173789 -59609683 + MIR3 SINE MIR 79 206 -2 237 192 244 0 chr11 89173842 89173920 -59609552 - L2 LINE L2 -31 3282 3186 282 73 0 0 chr11 89174479 89174520 -59608952 + (TG)n Simple_repeat Simple_repeat 2 42 0 446 275 170 6 chr11 89174796 89174932 -59608540 + L2 LINE L2 3109 3280 -33 189 0 0 0 chr11 89174932 89174953 -59608519 + (CAGAA)n Simple_repeat Simple_repeat 2 22 0 446 275 170 6 chr11 89174953 89174987 -59608485 + L2 LINE L2 3280 3307 -6 442 334 129 19 chr11 89175296 89175827 -59607645 - L2 LINE L2 -218 3054 2479 328 279 70 8 chr11 89175919 89176048 -59607424 + MIR SINE MIR 58 194 -68 213 121 0 0 chr11 89177225 89177258 -59606214 + (TG)n Simple_repeat Simple_repeat 2 34 0 421 269 87 47 chr11 89177884 89178033 -59605439 + MIR SINE MIR 46 200 -62 2051 145 0 3 chr11 89178453 89178757 -59604715 + AluSx SINE Alu 1 303 -9 309 320 109 0 chr11 89178926 89179054 -59604418 + L2 LINE L2 3126 3267 -5 203 265 235 30 chr11 89179113 89179279 -59604193 + L3 LINE CR1 1094 1293 -284 694 309 56 20 chr11 89179300 89179549 -59603923 - MIR SINE MIR -2 260 3 270 310 19 74 chr11 89179927 89180107 -59603365 + MIR SINE MIR 20 193 -60 437 278 60 13 chr11 89180707 89180858 -59602614 + MIR SINE MIR 61 218 -44 251 175 18 0 chr11 89180980 89181037 -59602435 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 213 122 61 0 chr11 89181073 89181122 -59602350 + (TA)n Simple_repeat Simple_repeat 2 53 0 200 256 12 0 chr11 89181158 89181244 -59602228 + (TA)n Simple_repeat Simple_repeat 1 87 0 2233 87 0 59 chr11 89181808 89182130 -59601342 + AluSc SINE Alu 1 303 -6 248 238 24 36 chr11 89182131 89182215 -59601257 + MLT1I LTR MaLR 105 187 -222 2515 180 25 38 chr11 89182251 89182773 -59600699 + MLT2B2 LTR ERVL 1 515 0 286 289 41 31 chr11 89183028 89183125 -59600347 - L2 LINE L2 -189 3083 2986 241 333 118 50 chr11 89183926 89184367 -59599105 - MLT1K LTR MaLR -18 570 100 1805 164 70 12 chr11 89185019 89185348 -59598124 - MER7A DNA MER2_type 0 346 1 1380 41 16 10 chr11 89186091 89186285 -59597187 + L1MA2 LINE L1 6110 6304 0 221 309 13 86 chr11 89186902 89187054 -59596418 - MER5B DNA MER1_type -19 159 19 23 0 0 0 chr11 89187245 89187268 -59596204 + AT_rich Low_complexity Low_complexity 1 23 0 469 261 105 50 chr11 89187677 89187915 -59595557 - MIR SINE MIR -1 261 11 26 50 0 0 chr11 89187915 89187955 -59595517 + AT_rich Low_complexity Low_complexity 1 40 0 13651 217 30 19 chr11 89188005 89189504 -59593968 - L1PA16 LINE L1 -5 6812 5331 1838 132 0 54 chr11 89189504 89189839 -59593633 - AluSg SINE Alu 0 319 1 13651 217 30 19 chr11 89189839 89192161 -59591311 - L1PA16 LINE L1 -1486 5331 2927 2531 65 0 0 chr11 89192161 89192469 -59591003 - AluY SINE Alu -3 308 1 13651 217 30 19 chr11 89192469 89193745 -59589727 - L1PA16 LINE L1 -3890 2927 1666 2218 120 0 0 chr11 89193783 89194082 -59589390 - AluSx SINE Alu -13 299 1 3110 47 0 0 chr11 89194299 89194679 -59588793 - L1PA5 LINE L1 -16 6138 5759 1620 34 0 0 chr11 89194679 89194885 -59588587 + L1P LINE L1 5122 5327 -819 307 260 10 0 chr11 89194889 89194985 -59588487 - L1PA16 LINE L1 -5182 1605 1509 603 372 5 14 chr11 89195032 89195255 -59588217 - L1PA16 LINE L1 -6564 223 3 424 380 39 18 chr11 89195516 89195795 -59587677 - L2 LINE L2 -404 2910 2626 877 226 0 0 chr11 89197221 89197380 -59586092 - FRAM SINE Alu -18 158 1 190 385 0 0 chr11 89197754 89197806 -59585666 - L2 LINE L2 -87 3185 3134 2365 88 0 0 chr11 89197842 89198147 -59585325 - AluY SINE Alu -6 305 1 191 333 0 0 chr11 89198186 89198237 -59585235 - L2 LINE L2 -214 3058 3008 504 288 86 27 chr11 89198240 89198462 -59585010 + MIR SINE MIR 2 236 -26 699 249 40 11 chr11 89198691 89198901 -59584571 - MIR SINE MIR -43 219 1 3577 309 102 35 chr11 89199029 89201275 -59582197 - L2 LINE L2 -124 3189 792 313 309 10 10 chr11 89201294 89201391 -59582081 - MIR SINE MIR -93 115 19 353 271 0 0 chr11 89201491 89201561 -59581911 + MER45 DNA AcHobo 2 71 -1510 275 265 59 0 chr11 89201534 89201602 -59581870 + MER45 DNA AcHobo 1510 1581 0 * 578 281 153 48 chr11 89201932 89202716 -59580756 - L1ME4a LINE L1 0 6121 5261 204 67 0 0 chr11 89204778 89204808 -59578664 + (CA)n Simple_repeat Simple_repeat 2 31 0 1996 142 0 0 chr11 89205404 89205692 -59577780 + AluSg SINE Alu 3 290 -20 180 0 0 0 chr11 89205699 89205719 -59577753 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2091 126 3 3 chr11 89206006 89206315 -59577157 + AluSc SINE Alu 1 309 0 1342 153 14 0 chr11 89207456 89207671 -59575801 - AluSq SINE Alu -17 296 79 262 57 0 0 chr11 89207771 89207806 -59575666 - Alu SINE Alu -266 35 1 414 39 0 0 chr11 89208651 89208703 -59574769 + (CA)n Simple_repeat Simple_repeat 2 53 0 477 380 5 0 chr11 89208835 89209027 -59574445 + MIR SINE MIR 14 206 -56 246 281 135 0 chr11 89209088 89209184 -59574288 + MIR SINE MIR 154 262 0 1994 151 0 0 chr11 89209431 89209729 -59573743 + AluSx SINE Alu 1 298 -14 276 315 46 54 chr11 89210178 89210308 -59573164 - L2 LINE L2 -22 3291 3163 336 283 182 25 chr11 89210514 89210673 -59572799 + MIR3 SINE MIR 5 188 -20 3093 130 59 4 chr11 89211099 89211605 -59571867 - L1PB4 LINE L1 -7 6149 5616 205 341 24 12 chr11 89211823 89211905 -59571567 + MIR SINE MIR 2 84 -178 2085 107 4 0 chr11 89212361 89212684 -59570788 - AluSx SINE Alu 0 324 1 21 36 0 0 chr11 89212685 89212713 -59570759 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr11 89212847 89212870 -59570602 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr11 89213858 89213878 -59569594 + (T)n Simple_repeat Simple_repeat 1 20 0 380 280 65 0 chr11 89214427 89214534 -59568938 - L2 LINE L2 -15 3298 3185 208 86 29 0 chr11 89215445 89215480 -59567992 - L2 LINE L2 0 3313 3278 240 154 0 0 chr11 89216160 89216212 -59567260 + (TA)n Simple_repeat Simple_repeat 1 52 0 192 179 0 0 chr11 89216253 89216292 -59567180 + (TA)n Simple_repeat Simple_repeat 1 39 0 476 111 12 0 chr11 89216715 89216796 -59566676 + (TTTTC)n Simple_repeat Simple_repeat 1 82 0 321 251 107 70 chr11 89217283 89217460 -59566012 + MIR SINE MIR 17 200 -62 362 202 169 121 chr11 89217460 89217708 -59565764 + MIR SINE MIR 3 262 0 403 282 41 81 chr11 89217711 89218102 -59565370 + L1M4b LINE L1 18 838 -6021 238 307 44 83 chr11 89218115 89218343 -59565129 + L1M4b LINE L1 810 1028 -5827 1090 223 85 59 chr11 89218611 89219068 -59564404 + L1M4b LINE L1 1212 1680 -5179 9599 185 80 46 chr11 89219092 89222162 -59561310 + L1MCa LINE L1 45 3229 -3197 1275 161 14 0 chr11 89222177 89222400 -59561072 + AluJo SINE Alu 85 310 -2 2191 240 33 12 chr11 89222407 89223079 -59560393 + L1MCa LINE L1 3229 3914 -2512 1072 178 4 39 chr11 89223090 89223321 -59560151 + L1MC1 LINE L1 6094 6316 -17 314 286 0 0 chr11 89223333 89223417 -59560055 + L1M4b LINE L1 1662 1745 -5110 12435 32 4 0 chr11 89223422 89225675 -59557797 - L1PA4 LINE L1 -2 6153 3893 1519 280 27 6 chr11 89225684 89226202 -59557270 - L1M4c LINE L1 -4660 1724 1196 350 233 105 15 chr11 89226208 89226341 -59557131 + L1M4b LINE L1 3111 3255 -3702 52 58 0 0 chr11 89226920 89227007 -59556465 + AT_rich Low_complexity Low_complexity 1 87 0 430 260 45 11 chr11 89228242 89228389 -59555083 - MIR SINE MIR -62 146 20 5640 104 9 4 chr11 89229030 89229847 -59553625 + L1PA11 LINE L1 5354 6174 0 325 388 15 8 chr11 89230924 89231058 -59552414 + MIR3 SINE MIR 34 168 -40 2308 106 0 0 chr11 89232292 89232603 -59550869 + AluY SINE Alu 1 311 0 286 273 0 23 chr11 89233272 89233360 -59550112 + MIR SINE MIR 177 262 0 243 320 13 0 chr11 89233759 89233837 -59549635 + L2 LINE L2 3194 3272 0 2738 116 302 2 chr11 89234053 89234579 -59548893 - LTR12 LTR ERV1 0 688 5 955 196 50 42 chr11 89234609 89234994 -59548478 - pTR5 LTR ERV1 -1092 1346 731 2090 121 0 7 chr11 89235001 89235307 -59548165 - AluSc SINE Alu -5 304 1 236 270 191 0 chr11 89235416 89235505 -59547967 + MIR SINE MIR 48 153 -109 421 338 66 28 chr11 89235544 89235831 -59547641 + L2 LINE L2 3016 3313 0 2013 125 14 0 chr11 89236602 89236899 -59546573 + AluSx SINE Alu 1 301 -11 2049 127 13 0 chr11 89237917 89238224 -59545248 + AluSx SINE Alu 1 311 -1 357 186 247 0 chr11 89239280 89239377 -59544095 - MIR SINE MIR -68 194 74 26 74 0 0 chr11 89239555 89239609 -59543863 + AT_rich Low_complexity Low_complexity 1 54 0 722 310 74 35 chr11 89240563 89241508 -59541964 + L1ME2 LINE L1 793 1774 -4622 354 110 3 10 chr11 89241533 89241593 -59541879 - AluSq/x SINE Alu -159 144 97 7353 147 5 8 chr11 89241671 89242918 -59540554 - L1PA11 LINE L1 -1560 4586 3344 4514 121 15 8 chr11 89242902 89242966 -59540506 + L1PA11 LINE L1 4581 4643 -1531 * 2219 117 3 0 chr11 89242966 89243274 -59540198 - AluSg SINE Alu -1 309 1 4514 121 15 8 chr11 89243274 89244456 -59539016 + L1PA11 LINE L1 4643 5829 -345 2403 63 0 7 chr11 89244457 89244756 -59538716 + AluY SINE Alu 2 298 -13 2357 120 3 8 chr11 89244873 89245232 -59538240 + L1PA11 LINE L1 5814 6170 -4 2292 87 3 0 chr11 89245234 89245532 -59537940 - AluSp SINE Alu -11 302 4 4090 254 65 46 chr11 89245556 89245987 -59537485 + L1ME2 LINE L1 1883 2305 -3910 1702 157 54 7 chr11 89245987 89246281 -59537191 - AluSx SINE Alu -3 309 2 4090 254 65 46 chr11 89246281 89248335 -59535137 + L1ME2 LINE L1 2305 4320 -1895 207 0 0 0 chr11 89248335 89248358 -59535114 + (TC)n Simple_repeat Simple_repeat 2 24 0 183 80 0 0 chr11 89248357 89248382 -59535090 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 4090 254 65 46 chr11 89248358 89249220 -59534252 + L1ME2 LINE L1 4320 5382 -833 275 132 113 0 chr11 89249230 89249283 -59534189 + L1MC4a LINE L1 6271 6329 -1479 425 221 0 0 chr11 89249314 89249400 -59534072 + MER4D LTR ERV1 634 719 -184 900 129 7 20 chr11 89249469 89249616 -59533856 + MER4D LTR ERV1 718 862 -41 2015 139 7 0 chr11 89249616 89249919 -59533553 - AluSx SINE Alu -7 305 1 1276 224 50 42 chr11 89249962 89250364 -59533108 + L1MC3 LINE L1 6304 6681 -1104 * 2184 251 13 11 chr11 89250347 89250898 -59532574 + L1MD3 LINE L1 7431 7982 -13 * 2834 213 35 57 chr11 89250890 89251278 -59532194 + L1ME2 LINE L1 5362 5757 -476 2022 139 0 0 chr11 89251278 89251565 -59531907 + AluSx SINE Alu 3 289 -23 2834 213 35 57 chr11 89251565 89251613 -59531859 + L1ME2 LINE L1 5757 5805 -428 1724 33 0 0 chr11 89251613 89251825 -59531647 + L1PA2 LINE L1 5944 6155 0 2834 213 35 57 chr11 89251825 89252270 -59531202 + L1ME2 LINE L1 5805 6225 -8 772 162 0 0 chr11 89252703 89252820 -59530652 - FLAM_C SINE Alu -16 117 1 644 206 44 61 chr11 89253592 89253772 -59529700 - MER69A DNA AcHobo 0 177 1 2052 101 3 10 chr11 89253945 89254233 -59529239 - AluSc SINE Alu -23 286 1 252 311 238 0 chr11 89254556 89254678 -59528794 + L2 LINE L2 3122 3272 0 418 311 134 30 chr11 89254703 89254813 -59528659 + MER5A DNA MER1_type 9 143 -46 2633 51 0 0 chr11 89254813 89255124 -59528348 + AluY SINE Alu 1 311 0 418 311 134 30 chr11 89255124 89255177 -59528295 + MER5A DNA MER1_type 143 189 0 334 242 71 10 chr11 89255457 89255556 -59527916 + L1MC4 LINE L1 6599 6703 -1339 1861 179 0 16 chr11 89256254 89256566 -59526906 - AluJb SINE Alu -5 307 1 2152 113 0 25 chr11 89256725 89257043 -59526429 - AluSg SINE Alu 0 310 1 443 233 19 94 chr11 89257509 89257571 -59525901 - MER5B DNA MER1_type 0 178 113 2216 92 0 7 chr11 89257571 89257875 -59525597 + AluSc SINE Alu 1 302 -7 443 233 19 94 chr11 89257875 89257971 -59525501 - MER5B DNA MER1_type -65 113 32 243 200 0 102 chr11 89258675 89258761 -59524711 + MIR SINE MIR 73 146 -82 551 241 76 25 chr11 89258840 89258998 -59524474 - MIR SINE MIR -28 234 69 766 192 0 0 chr11 89259243 89259373 -59524099 - FRAM SINE Alu -19 157 28 4552 148 68 30 chr11 89259402 89260266 -59523206 - MER4D LTR ERV1 -6 897 1 3617 146 61 35 chr11 89260357 89260901 -59522571 - MER50 LTR ERV1 -23 711 144 1634 231 49 81 chr11 89260901 89261533 -59521939 - LTR9 LTR ERV1 0 612 1 3617 146 61 35 chr11 89261533 89261681 -59521791 - MER50 LTR ERV1 -590 144 1 214 299 47 28 chr11 89261730 89261837 -59521635 - MIR SINE MIR -64 144 36 1090 231 64 58 chr11 89261986 89262345 -59521127 - MLT1A2 LTR MaLR -11 363 3 428 283 159 51 chr11 89262381 89262657 -59520815 - L2 LINE L2 0 3313 3008 743 257 82 59 chr11 89263367 89263756 -59519716 - MLT1J LTR MaLR 0 511 114 359 234 65 71 chr11 89264342 89264526 -59518946 - L2 LINE L2 -13 3300 3118 871 261 12 32 chr11 89264880 89265129 -59518343 - MIR SINE MIR -1 261 18 300 284 119 8 chr11 89265132 89265266 -59518206 - MER5A DNA MER1_type -1 188 40 548 339 23 23 chr11 89265733 89265993 -59517479 - MIR SINE MIR -1 261 2 2079 130 20 0 chr11 89266864 89267157 -59516315 - AluSg SINE Alu -11 299 1 202 325 79 24 chr11 89267160 89267286 -59516186 - L2 LINE L2 -13 3300 3168 194 390 37 18 chr11 89267492 89267656 -59515816 + L2 LINE L2 2916 3082 -190 234 0 0 0 chr11 89267683 89267709 -59515763 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2044 125 0 0 chr11 89267709 89267989 -59515483 - AluSc SINE Alu -27 282 3 2055 134 0 25 chr11 89268686 89269007 -59514465 + AluSq SINE Alu 1 313 0 21 36 0 0 chr11 89269016 89269044 -59514428 + AT_rich Low_complexity Low_complexity 1 28 0 261 356 51 86 chr11 89269580 89269951 -59513521 - L2 LINE L2 0 3272 2915 806 239 154 0 chr11 89270062 89270263 -59513209 + MIR SINE MIR 4 235 -27 2093 128 3 0 chr11 89270943 89271240 -59512232 + AluSx SINE Alu 2 299 -13 199 336 34 48 chr11 89272091 89272237 -59511235 + MIR SINE MIR 82 225 -37 2177 101 10 3 chr11 89272465 89272763 -59510709 + AluSq SINE Alu 1 300 -13 25 65 0 0 chr11 89272889 89272935 -59510537 + AT_rich Low_complexity Low_complexity 1 46 0 188 359 141 0 chr11 89272962 89273054 -59510418 - L2 LINE L2 0 3272 3168 21 0 0 0 chr11 89273308 89273329 -59510143 + AT_rich Low_complexity Low_complexity 1 21 0 2155 101 18 0 chr11 89273329 89273607 -59509865 - AluSg SINE Alu -27 283 1 1669 168 0 69 chr11 89273694 89274027 -59509445 + AluJb SINE Alu 3 312 0 184 235 0 98 chr11 89274451 89274502 -59508970 - L2 LINE L2 -13 3259 3214 31 44 0 0 chr11 89275284 89275329 -59508143 + AT_rich Low_complexity Low_complexity 1 45 0 220 373 37 30 chr11 89275562 89275696 -59507776 - L2 LINE L2 -665 2649 2515 369 269 88 77 chr11 89275795 89275889 -59507583 - MLT1J2 LTR MaLR -6 444 353 1040 221 34 0 chr11 89275889 89276097 -59507375 - MER20 DNA MER1_type -4 215 1 369 269 88 77 chr11 89276097 89276184 -59507288 - MLT1J2 LTR MaLR -97 353 261 605 175 0 48 chr11 89276385 89276574 -59506898 + CT-rich Low_complexity Low_complexity 1 180 0 182 36 0 36 chr11 89276575 89276603 -59506869 + (TTCC)n Simple_repeat Simple_repeat 2 28 0 2021 147 10 0 chr11 89276603 89276910 -59506562 - AluSx SINE Alu -2 310 1 400 308 13 0 chr11 89276995 89277151 -59506321 - MER103 DNA DNA -1 165 8 2274 140 28 17 chr11 89277221 89277579 -59505893 - THE1B LTR MaLR 0 364 3 720 226 100 59 chr11 89278405 89278846 -59504626 + MLT1E3 LTR MaLR 55 623 -1 346 250 20 46 chr11 89279138 89279270 -59504202 + MLT1J1 LTR MaLR 10 139 -271 312 225 45 22 chr11 89279350 89279439 -59504033 + MLT1I LTR MaLR 319 409 0 247 248 16 0 chr11 89280317 89280438 -59503034 + (TA)n Simple_repeat Simple_repeat 1 123 0 315 319 0 0 chr11 89280443 89280534 -59502938 + L1MC4 LINE L1 6614 6704 -1338 300 158 0 0 chr11 89280535 89280592 -59502880 + (TA)n Simple_repeat Simple_repeat 2 58 0 4343 159 47 35 chr11 89280729 89281130 -59502342 + L1MB7 LINE L1 4926 5320 -864 2129 211 72 11 chr11 89281130 89281605 -59501867 - MLT1D LTR MaLR -1 504 1 4343 159 47 35 chr11 89281605 89282291 -59501181 + L1MB7 LINE L1 5320 6037 -147 1974 176 0 0 chr11 89282291 89282603 -59500869 + AluJb SINE Alu 1 312 0 4343 159 47 35 chr11 89282603 89282752 -59500720 + L1MB7 LINE L1 6037 6183 -1 188 188 188 0 chr11 89283438 89283486 -59499986 + MIR SINE MIR 36 92 -116 21 0 0 0 chr11 89283825 89283846 -59499626 + AT_rich Low_complexity Low_complexity 1 21 0 1437 214 50 69 chr11 89284025 89284503 -59498969 - MER31B LTR ERV1 0 661 1 774 387 26 0 chr11 89284738 89285082 -59498390 - MER115 DNA AcHobo -152 541 189 1721 170 66 45 chr11 89285260 89285637 -59497835 - MSTD LTR MaLR -8 388 4 2286 119 0 0 chr11 89285779 89286082 -59497390 - AluSx SINE Alu -8 304 2 238 315 177 8 chr11 89286258 89286388 -59497084 - MIR SINE MIR -99 163 12 304 250 80 0 chr11 89286647 89286747 -59496725 - L1ME4a LINE L1 -3 6118 6011 4746 52 11 7 chr11 89286960 89287569 -59495903 + L1PA6 LINE L1 5357 5968 -186 1928 141 0 3 chr11 89288073 89288371 -59495101 - AluSq SINE Alu -16 297 1 603 313 70 97 chr11 89288884 89289498 -59493974 - L2 LINE L2 0 3272 2688 2178 127 3 0 chr11 89289498 89289806 -59493666 + AluSx SINE Alu 1 309 -3 603 313 70 97 chr11 89289806 89290377 -59493095 - L2 LINE L2 -584 2688 2103 330 324 27 34 chr11 89290454 89290602 -59492870 + Charlie2 DNA MER1_type 131 277 -2505 2453 230 96 24 chr11 89290631 89291524 -59491948 + Charlie2 DNA MER1_type 1857 2814 -48 880 322 161 33 chr11 89291569 89292466 -59491006 - L2 LINE L2 -1215 2099 1089 262 307 73 53 chr11 89292477 89292627 -59490845 + MIR SINE MIR 1 153 -109 1016 288 83 57 chr11 89293637 89294253 -59489219 - L2 LINE L2 0 3313 2676 2519 50 0 0 chr11 89294253 89294551 -59488921 + AluY SINE Alu 1 298 -13 1016 288 83 57 chr11 89294551 89294758 -59488714 - L2 LINE L2 -637 2676 2476 294 295 62 27 chr11 89294841 89294953 -59488519 - L2 LINE L2 -40 3273 3158 388 257 9 35 chr11 89295519 89295632 -59487840 + L2 LINE L2 3163 3272 0 214 286 52 13 chr11 89295935 89296012 -59487460 - L2 LINE L2 0 3313 3234 360 322 78 62 chr11 89296098 89296455 -59487017 + L2 LINE L2 2469 2831 -483 344 290 65 86 chr11 89296468 89296713 -59486759 + L2 LINE L2 2952 3191 -81 328 253 11 177 chr11 89296945 89297131 -59486341 - MER91A DNA MER1_type 0 196 42 24 0 0 0 chr11 89297240 89297264 -59486208 + AT_rich Low_complexity Low_complexity 1 24 0 320 374 22 17 chr11 89297337 89297516 -59485956 - L2 LINE L2 -556 2758 2579 738 145 8 8 chr11 89297546 89297670 -59485802 + FRAM SINE Alu 35 158 -18 1635 165 10 45 chr11 89297676 89297985 -59485487 + AluJb SINE Alu 1 298 -14 29 60 0 0 chr11 89297992 89298042 -59485430 + AT_rich Low_complexity Low_complexity 1 50 0 197 267 17 17 chr11 89298241 89298301 -59485171 - MIR3 SINE MIR 0 208 149 220 256 64 39 chr11 89298325 89298403 -59485069 - MIR SINE MIR -180 82 3 269 320 20 34 chr11 89298962 89299109 -59484363 - L2 LINE L2 -572 2742 2598 647 248 20 26 chr11 89299941 89300115 -59483357 + MER5A DNA MER1_type 1 169 -9 417 103 0 181 chr11 89300515 89300631 -59482841 - MER53 DNA DNA -94 95 1 27 49 0 0 chr11 89301330 89301371 -59482101 + AT_rich Low_complexity Low_complexity 1 41 0 273 29 0 0 chr11 89301571 89301605 -59481867 + (TG)n Simple_repeat Simple_repeat 1 34 0 208 0 0 0 chr11 89301804 89301827 -59481645 + (TTTTG)n Simple_repeat Simple_repeat 3 100 0 1878 108 0 4 chr11 89301827 89302088 -59481384 - AluSg SINE Alu -1 303 22 2297 95 3 3 chr11 89302377 89302683 -59480789 - AluSq SINE Alu -7 306 1 5625 121 6 0 chr11 89302926 89304318 -59479154 - L1PA15 LINE L1 0 6165 4765 622 290 39 46 chr11 89304512 89304771 -59478701 - MIR SINE MIR 0 262 6 4732 42 0 0 chr11 89305043 89305614 -59477858 - L1PA5 LINE L1 -8 6146 5576 319 172 0 16 chr11 89306039 89306103 -59477369 - FLAM_A SINE Alu -6 127 65 386 282 91 0 chr11 89306829 89306939 -59476533 - MIR SINE MIR -59 149 30 282 341 72 33 chr11 89307599 89307843 -59475629 + MIR SINE MIR 9 257 -5 * 611 286 10 20 chr11 89307814 89308013 -59475459 - MIR SINE MIR -3 259 63 225 222 14 28 chr11 89308075 89308147 -59475325 - MLT1L LTR MaLR -536 79 9 492 307 131 8 chr11 89308154 89308421 -59475051 - L2 LINE L2 -622 2692 2393 24 0 0 0 chr11 89308874 89308898 -59474574 + AT_rich Low_complexity Low_complexity 1 24 0 2159 119 3 0 chr11 89308898 89309191 -59474281 - AluSx SINE Alu -18 294 1 26 0 0 0 chr11 89309608 89309634 -59473838 + AT_rich Low_complexity Low_complexity 1 26 0 29 70 0 0 chr11 89310259 89310316 -59473156 + AT_rich Low_complexity Low_complexity 1 57 0 1562 194 14 4 chr11 89310496 89310680 -59472792 - AluJo SINE Alu 0 321 131 315 0 0 0 chr11 89310680 89310715 -59472757 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1562 194 14 4 chr11 89310715 89310848 -59472624 - AluJo SINE Alu -190 131 1 359 219 278 35 chr11 89311129 89311279 -59472193 + MIR SINE MIR 48 238 -24 1062 257 16 4 chr11 89311279 89311532 -59471940 + MIR SINE MIR 2 257 -5 22 35 0 0 chr11 89311797 89311826 -59471646 + AT_rich Low_complexity Low_complexity 1 29 0 2057 92 27 0 chr11 89312865 89313158 -59470314 + L1PA8 LINE L1 5869 6169 -3 411 314 170 40 chr11 89313301 89313648 -59469824 - L2 LINE L2 -1 3312 2921 470 289 47 39 chr11 89313698 89313930 -59469542 - L2 LINE L2 -469 2845 2612 21 36 0 0 chr11 89314227 89314255 -59469217 + AT_rich Low_complexity Low_complexity 1 28 0 285 279 29 10 chr11 89315500 89315604 -59467868 + MIR SINE MIR 79 184 -78 28 0 0 0 chr11 89315729 89315757 -59467715 + AT_rich Low_complexity Low_complexity 1 28 0 3571 83 8 18 chr11 89315770 89316278 -59467194 - L1PA11 LINE L1 0 6174 5672 1798 150 14 4 chr11 89316476 89316787 -59466685 - AluSx SINE Alu 0 314 1 184 235 0 0 chr11 89316911 89316945 -59466527 - L2 LINE L2 -19 3294 3261 1081 305 61 28 chr11 89317212 89317707 -59465765 + MLT1J LTR MaLR 1 511 0 232 291 136 18 chr11 89317708 89317818 -59465654 - MIR SINE MIR -94 168 46 197 261 0 0 chr11 89318348 89318394 -59465078 + L2 LINE L2 2932 2977 -336 302 376 85 75 chr11 89318533 89318815 -59464657 - L2 LINE L2 -50 3222 2938 598 311 11 6 chr11 89319097 89319277 -59464195 - MER5A DNA MER1_type 0 189 9 201 39 0 0 chr11 89319651 89319677 -59463795 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 2202 119 0 0 chr11 89319716 89320011 -59463461 - AluSx SINE Alu -17 295 1 225 0 0 0 chr11 89320299 89320324 -59463148 + (TC)n Simple_repeat Simple_repeat 2 26 0 198 0 0 0 chr11 89320323 89320345 -59463127 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 937 208 15 0 chr11 89320443 89320645 -59462827 + MER3 DNA MER1_type 1 205 -4 551 259 161 12 chr11 89320846 89321008 -59462464 - MER5A DNA MER1_type 0 189 4 413 256 23 23 chr11 89321207 89321340 -59462132 - MIR SINE MIR -82 180 48 473 198 52 0 chr11 89321388 89321484 -59461988 + MER5A DNA MER1_type 9 109 -80 2021 113 0 14 chr11 89321487 89321779 -59461693 - AluSx SINE Alu -11 301 14 258 317 93 68 chr11 89323225 89323430 -59460042 + MLT1I LTR MaLR 98 307 -102 3358 181 15 10 chr11 89323441 89324026 -59459446 + Tigger7 DNA MER2_type 9 596 -137 482 235 0 0 chr11 89324032 89324117 -59459355 + Tigger7 DNA MER2_type 2503 2587 0 276 315 0 0 chr11 89324826 89324899 -59458573 + L3 LINE CR1 1498 1570 -7 1817 132 3 60 chr11 89325882 89326200 -59457272 + AluSx SINE Alu 1 300 -12 872 246 24 9 chr11 89326741 89326952 -59456520 + MIR SINE MIR 19 232 -30 368 291 101 8 chr11 89327389 89327645 -59455827 + MER102a DNA MER1_type 16 323 -7 376 221 13 0 chr11 89327658 89327735 -59455737 - MIR SINE MIR -3 259 182 209 271 135 42 chr11 89328685 89328781 -59454691 - L2 LINE L2 -10 3262 3158 2018 128 10 7 chr11 89328941 89329246 -59454226 - AluSc SINE Alu -3 306 1 1915 120 43 7 chr11 89329446 89329745 -59453727 - AluSg SINE Alu 0 310 1 458 281 103 22 chr11 89330589 89330774 -59452698 + MIR SINE MIR 63 262 0 350 272 63 51 chr11 89330941 89331099 -59452373 - MIR SINE MIR 0 262 103 26 0 0 0 chr11 89331982 89332008 -59451464 + AT_rich Low_complexity Low_complexity 1 26 0 1951 137 10 0 chr11 89332632 89332931 -59450541 - AluSx SINE Alu -10 302 1 192 158 0 0 chr11 89334109 89334147 -59449325 + (TG)n Simple_repeat Simple_repeat 1 38 0 770 227 91 0 chr11 89334767 89334943 -59448529 - MIR SINE MIR -50 212 21 1940 176 0 0 chr11 89334987 89335294 -59448178 - AluJb SINE Alu -5 307 1 269 348 71 7 chr11 89335603 89335744 -59447728 - MIR3 SINE MIR -2 206 57 357 250 32 154 chr11 89335755 89336035 -59447437 - MIR SINE MIR 0 262 17 1798 141 38 3 chr11 89336297 89336588 -59446884 + AluSq SINE Alu 1 301 -12 470 248 78 7 chr11 89337073 89337214 -59446258 - MIR SINE MIR -108 154 4 654 297 31 46 chr11 89337873 89338132 -59445340 - MIR SINE MIR -6 256 2 448 319 50 13 chr11 89339378 89339557 -59443915 - MIR SINE MIR -64 144 4 2050 165 3 0 chr11 89339841 89340193 -59443279 - L1PB1 LINE L1 -3 6148 5796 191 213 21 21 chr11 89340340 89340387 -59443085 + MIR SINE MIR 19 65 -143 188 227 147 13 chr11 89342157 89342232 -59441240 + MIR SINE MIR 32 116 -92 357 282 134 30 chr11 89342564 89342766 -59440706 - MIR SINE MIR 0 262 40 183 186 0 0 chr11 89342999 89343042 -59440430 + (TAG)n Simple_repeat Simple_repeat 3 45 0 255 319 176 7 chr11 89344389 89344524 -59438948 + MIR SINE MIR 30 185 -77 789 273 59 13 chr11 89345667 89345765 -59437707 + MIR SINE MIR 14 106 -156 2549 53 0 0 chr11 89345765 89346065 -59437407 - AluY SINE Alu -11 300 1 789 273 59 13 chr11 89346065 89346204 -59437268 + MIR SINE MIR 106 262 0 180 193 158 18 chr11 89346214 89346271 -59437201 + L2 LINE L2 3208 3272 0 415 390 13 7 chr11 89346478 89346632 -59436840 + L2 LINE L2 3117 3271 -1 227 200 0 0 chr11 89347265 89347305 -59436167 + L2 LINE L2 3254 3293 -20 190 211 154 0 chr11 89347530 89347582 -59435890 - L2 LINE L2 0 3272 3213 317 271 217 8 chr11 89348900 89349029 -59434443 - L2 LINE L2 0 3313 3158 207 0 0 0 chr11 89349254 89349277 -59434195 + (A)n Simple_repeat Simple_repeat 1 23 0 207 0 0 0 chr11 89350612 89350635 -59432837 + (A)n Simple_repeat Simple_repeat 1 23 0 248 320 87 60 chr11 89352616 89352662 -59430810 - L2 LINE L2 0 3313 3270 2315 94 3 3 chr11 89352662 89352959 -59430513 - AluY SINE Alu -14 297 1 248 320 87 60 chr11 89352959 89353062 -59430410 - L2 LINE L2 -43 3270 3160 337 253 13 13 chr11 89353743 89353822 -59429650 - L2 LINE L2 -1 3271 3193 811 288 47 14 chr11 89354129 89354407 -59429065 + L1ME1 LINE L1 44 330 -6066 1991 254 81 8 chr11 89354415 89355171 -59428301 + L1ME1 LINE L1 2581 3391 -2824 1136 177 60 39 chr11 89355262 89355494 -59427978 - AluJo SINE Alu -75 237 1 1508 234 45 33 chr11 89355495 89356004 -59427468 + L1ME1 LINE L1 3412 3926 -2289 775 77 0 10 chr11 89356105 89356231 -59427241 - L1PA7 LINE L1 0 6154 6044 5848 67 13 1 chr11 89356233 89357150 -59426322 + L1PA7 LINE L1 5098 6027 -127 930 246 60 15 chr11 89357196 89357607 -59425865 + L1ME1 LINE L1 3961 4493 -1722 283 79 0 0 chr11 89357612 89357650 -59425822 - AluSx SINE Alu -8 292 255 1424 135 0 0 chr11 89357651 89357851 -59425621 - AluSx SINE Alu -89 223 24 2220 61 6 74 chr11 89357998 89358324 -59425148 - AluY SINE Alu -7 304 1 3077 204 57 56 chr11 89358329 89358741 -59424731 + L1ME1 LINE L1 4919 5329 -906 1723 33 0 14 chr11 89358741 89358952 -59424520 - L1PA3 LINE L1 0 6155 5948 3077 204 57 56 chr11 89358952 89359811 -59423661 + L1ME1 LINE L1 5329 6183 -52 317 359 26 13 chr11 89360059 89360215 -59423257 + MIR3 SINE MIR 46 203 -5 597 188 163 31 chr11 89360590 89360750 -59422722 + MIR SINE MIR 61 241 -21 197 278 0 19 chr11 89360720 89360774 -59422698 + L2 LINE L2 3257 3309 -4 * 264 235 245 10 chr11 89361015 89361117 -59422355 + L2 LINE L2 3137 3262 -10 2091 110 25 0 chr11 89361265 89361547 -59421925 + AluSp SINE Alu 3 291 -22 279 325 48 32 chr11 89362103 89362229 -59421243 + L2 LINE L2 3141 3268 -4 577 261 67 46 chr11 89362363 89362601 -59420871 + L2 LINE L2 2205 2447 -867 627 224 20 20 chr11 89362854 89363006 -59420466 - MER20 DNA MER1_type -67 152 1 221 360 40 10 chr11 89363110 89363210 -59420262 + L2 LINE L2 3203 3305 -8 671 311 5 5 chr11 89364131 89364321 -59419151 + MIR SINE MIR 15 204 -58 345 288 53 24 chr11 89364522 89364668 -59418804 - MIR SINE MIR -65 143 42 222 246 26 0 chr11 89364859 89364973 -59418499 + CT-rich Low_complexity Low_complexity 2 118 0 351 0 0 0 chr11 89364976 89365015 -59418457 + (CA)n Simple_repeat Simple_repeat 2 40 0 24 0 0 0 chr11 89365260 89365284 -59418188 + AT_rich Low_complexity Low_complexity 1 24 0 280 343 10 49 chr11 89365360 89365564 -59417908 + MIR SINE MIR 66 261 -1 294 349 46 20 chr11 89367592 89367744 -59415728 + MIR SINE MIR 57 212 -50 466 347 59 5 chr11 89367789 89368008 -59415464 - MIR SINE MIR -10 252 22 415 318 47 43 chr11 89368039 89368294 -59415178 + MIR SINE MIR 7 262 0 359 308 39 0 chr11 89368992 89369122 -59414350 + MIR SINE MIR 124 258 -4 1188 83 12 0 chr11 89370044 89370213 -59413259 + MER30 DNA MER1_type 1 171 -59 256 302 47 0 chr11 89370272 89370358 -59413114 - L2 LINE L2 -505 2809 2720 214 310 90 0 chr11 89370403 89370503 -59412969 - L2 LINE L2 -605 2709 2601 2189 120 0 7 chr11 89370626 89370935 -59412537 + AluSq SINE Alu 1 307 -6 2181 119 3 0 chr11 89371551 89371854 -59411618 + AluSx SINE Alu 1 304 -8 320 335 35 60 chr11 89372353 89372553 -59410919 + MIR SINE MIR 19 213 -49 221 243 171 71 chr11 89372819 89372959 -59410513 - MIR3 SINE MIR -48 160 7 1405 199 4 14 chr11 89373674 89373950 -59409522 - AluJo SINE Alu -15 297 25 653 308 97 62 chr11 89374621 89375456 -59408016 + L2 LINE L2 2446 3312 -1 215 363 123 46 chr11 89375766 89376155 -59407317 - L2 LINE L2 -43 3229 2811 315 96 0 0 chr11 89377781 89377833 -59405639 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 327 263 68 79 chr11 89377948 89378138 -59405334 + L1ME LINE L1 5397 5584 -537 195 404 18 9 chr11 89378140 89378254 -59405218 + L2 LINE L2 3154 3268 -4 365 265 78 30 chr11 89378276 89378442 -59405030 + L1ME LINE L1 5588 5761 -360 5838 58 12 31 chr11 89378491 89378615 -59404857 + L1PA7 LINE L1 5368 5493 -661 2313 58 24 10 chr11 89378615 89378910 -59404562 + AluY SINE Alu 7 305 -6 5838 58 12 31 chr11 89378910 89379583 -59403889 + L1PA7 LINE L1 5493 6150 -4 26 0 0 0 chr11 89379870 89379896 -59403576 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr11 89380010 89380034 -59403438 + AT_rich Low_complexity Low_complexity 1 24 0 1580 158 36 18 chr11 89380038 89380176 -59403296 + AluSx SINE Alu 1 135 -173 204 67 0 0 chr11 89380176 89380206 -59403266 + (CA)n Simple_repeat Simple_repeat 2 31 0 1580 158 36 18 chr11 89380206 89380370 -59403102 + AluSx SINE Alu 135 308 0 1361 204 65 9 chr11 89381740 89382063 -59401409 - MER58B DNA MER1_type 0 341 1 564 213 93 16 chr11 89382131 89382314 -59401158 - MER20B DNA MER1_type -1 782 586 273 167 0 0 chr11 89382820 89382874 -59400598 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 963 174 26 35 chr11 89383293 89383523 -59399949 + L1MA6 LINE L1 6073 6300 0 1068 268 88 15 chr11 89383607 89384003 -59399469 - MER20B DNA MER1_type -290 493 69 3783 135 12 12 chr11 89384034 89384633 -59398839 + L1PA15 LINE L1 5448 6046 -119 4562 120 119 28 chr11 89384641 89384691 -59398781 - pTR5 LTR ERV1 0 2438 2394 1939 92 0 0 chr11 89384691 89384953 -59398519 + AluY SINE Alu 44 305 -6 4562 120 119 28 chr11 89384953 89386332 -59397140 - pTR5 LTR ERV1 -44 2394 743 567 191 0 9 chr11 89386332 89386447 -59397025 + L1PA15 LINE L1 6049 6162 -3 355 284 112 0 chr11 89386696 89386812 -59396660 + MIR3 SINE MIR 62 190 -18 295 329 110 0 chr11 89387518 89387673 -59395799 + MIR SINE MIR 67 238 -24 486 267 97 41 chr11 89388540 89388735 -59394737 - MIR SINE MIR 0 262 57 321 297 46 51 chr11 89388801 89388996 -59394476 - MIR3 SINE MIR -9 199 6 378 241 112 0 chr11 89389301 89389417 -59394055 - MIR SINE MIR -10 252 124 1578 160 26 32 chr11 89389421 89389733 -59393739 + AluSg SINE Alu 1 310 0 30 0 0 0 chr11 89390012 89390042 -59393430 + AT_rich Low_complexity Low_complexity 1 30 0 2159 95 3 7 chr11 89390054 89390339 -59393133 - AluSc SINE Alu -25 284 1 1988 152 7 0 chr11 89390341 89390644 -59392828 - AluSx SINE Alu -7 305 1 333 172 0 0 chr11 89390715 89390779 -59392693 + GA-rich Low_complexity Low_complexity 2 65 0 722 146 19 13 chr11 89390798 89390956 -59392516 + GA-rich Low_complexity Low_complexity 4 162 0 263 328 8 0 chr11 89391925 89392050 -59391422 + (TA)n Simple_repeat Simple_repeat 1 126 0 25 31 0 0 chr11 89393043 89393075 -59390397 + AT_rich Low_complexity Low_complexity 1 32 0 244 325 25 50 chr11 89396010 89396130 -59387342 + L2 LINE L2 3156 3272 0 25 0 0 0 chr11 89396187 89396212 -59387260 + AT_rich Low_complexity Low_complexity 1 25 0 518 300 51 78 chr11 89398416 89398786 -59384686 + L2 LINE L2 2531 2890 -424 220 254 0 45 chr11 89399045 89399112 -59384360 + L2 LINE L2 2995 3058 -214 23 0 0 0 chr11 89399775 89399798 -59383674 + AT_rich Low_complexity Low_complexity 1 23 0 2102 133 7 0 chr11 89399826 89400119 -59383353 - AluSx SINE Alu -17 295 1 8995 202 43 18 chr11 89400263 89402436 -59381036 - L1MB1 LINE L1 0 6404 4288 1563 84 4 25 chr11 89402436 89402673 -59380799 - L1PA6 LINE L1 0 6154 5923 8995 202 43 18 chr11 89402673 89404342 -59379130 - L1MB1 LINE L1 -2116 4288 2408 1759 104 122 7 chr11 89404342 89404612 -59378860 - AluSg1 SINE Alu -8 301 1 8995 202 43 18 chr11 89404612 89405054 -59378418 - L1MB1 LINE L1 -3996 2408 1979 314 124 25 74 chr11 89405456 89405577 -59377895 + GA-rich Low_complexity Low_complexity 2 116 0 278 283 76 33 chr11 89406137 89406229 -59377243 - L2 LINE L2 -5 3308 3213 236 342 0 66 chr11 89406333 89406409 -59377063 + L2 LINE L2 3112 3182 -90 2372 149 8 0 chr11 89406524 89406892 -59376580 + THE1C LTR MaLR 1 371 -4 238 289 0 0 chr11 89406899 89406951 -59376521 + MIR SINE MIR 53 104 -104 896 250 48 4 chr11 89407103 89407331 -59376141 + MIR SINE MIR 10 247 -15 240 324 140 22 chr11 89407566 89407745 -59375727 - MIR SINE MIR -4 258 59 309 321 167 37 chr11 89407863 89408025 -59375447 - MIR SINE MIR -78 184 2 644 297 75 29 chr11 89408424 89408663 -59374809 - MIR SINE MIR -6 256 7 201 108 0 0 chr11 89408671 89408708 -59374764 + (A)n Simple_repeat Simple_repeat 1 37 0 2509 62 3 0 chr11 89409434 89409739 -59373733 - AluY SINE Alu -5 306 1 648 86 21 0 chr11 89409739 89409832 -59373640 - AluSg/x SINE Alu -10 299 205 315 50 0 0 chr11 89409832 89409872 -59373600 - Alu SINE Alu -259 40 1 468 308 105 18 chr11 89411834 89412110 -59371362 - L2 LINE L2 0 3313 3014 375 191 12 12 chr11 89412350 89412512 -59370960 + GA-rich Low_complexity Low_complexity 1 162 0 680 264 19 31 chr11 89412859 89413087 -59370385 + MIR SINE MIR 22 244 -18 22 0 0 0 chr11 89413216 89413238 -59370234 + AT_rich Low_complexity Low_complexity 1 22 0 229 233 0 121 chr11 89414326 89414442 -59369030 + MIR SINE MIR 81 182 -80 310 214 168 8 chr11 89414604 89414735 -59368737 - L1ME4a LINE L1 -26 6095 5944 275 275 47 61 chr11 89415698 89415777 -59367695 + MIR SINE MIR 74 153 -109 1770 114 65 0 chr11 89415777 89416068 -59367404 + AluSg SINE Alu 3 310 0 275 275 47 61 chr11 89416068 89416118 -59367354 + MIR SINE MIR 153 202 -60 315 287 126 7 chr11 89416501 89416644 -59366828 - MIR SINE MIR -8 254 95 310 275 66 97 chr11 89417777 89417933 -59365539 - MIR SINE MIR -67 141 16 232 277 0 0 chr11 89418498 89418563 -59364909 + (TGG)n Simple_repeat Simple_repeat 1 65 0 418 241 84 24 chr11 89418687 89418853 -59364619 - MER5B DNA MER1_type -2 176 1 22 0 0 0 chr11 89419288 89419310 -59364162 + AT_rich Low_complexity Low_complexity 1 22 0 300 274 0 24 chr11 89419802 89419886 -59363586 + MIR SINE MIR 141 222 -40 232 293 67 142 chr11 89420209 89420448 -59363024 - L2 LINE L2 -87 3185 2965 392 379 35 0 chr11 89420666 89420811 -59362661 - L2 LINE L2 0 3272 3123 527 303 104 14 chr11 89421432 89421653 -59361819 + MIR SINE MIR 22 262 0 186 43 0 0 chr11 89422861 89422884 -59360588 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 894 271 9 0 chr11 89422962 89423183 -59360289 + MER58A DNA MER1_type 1 223 -1 23 0 0 0 chr11 89423286 89423309 -59360163 + AT_rich Low_complexity Low_complexity 1 23 0 208 418 60 0 chr11 89423512 89423646 -59359826 + L2 LINE L2 3122 3263 -9 337 264 0 55 chr11 89423685 89423776 -59359696 - MIR SINE MIR -157 105 20 1888 113 0 0 chr11 89423813 89424070 -59359402 - AluSc SINE Alu -14 295 39 217 340 32 32 chr11 89424107 89424201 -59359271 + MIR3 SINE MIR 113 206 -2 258 355 89 0 chr11 89424576 89424700 -59358772 - L3 LINE CR1 -166 1411 1277 312 280 13 0 chr11 89424745 89424820 -59358652 + MLT1J LTR MaLR 111 186 -325 519 297 99 17 chr11 89425106 89425338 -59358134 + MIR SINE MIR 1 251 -11 371 303 28 87 chr11 89425396 89425614 -59357858 - MIR SINE MIR -29 233 29 251 232 61 40 chr11 89425731 89425830 -59357642 + MER103 DNA DNA 52 152 -14 2185 169 53 20 chr11 89425843 89426292 -59357180 + MLT1C LTR MaLR 4 467 0 232 299 0 30 chr11 89426718 89426785 -59356687 - MER91 DNA MER1_type -79 111 47 451 153 0 14 chr11 89426999 89427071 -59356401 + FLAM SINE Alu 51 121 -22 2416 46 0 26 chr11 89427128 89427435 -59356037 + AluY SINE Alu 1 299 -12 248 181 69 42 chr11 89427826 89427898 -59355574 + MIR SINE MIR 179 252 -10 318 265 72 60 chr11 89428713 89428879 -59354593 + MIR SINE MIR 88 255 -7 369 285 140 10 chr11 89429433 89429614 -59353858 + MIR SINE MIR 16 218 -44 810 206 19 12 chr11 89429701 89429904 -59353568 + MLT2F LTR ERVL 5 254 -409 252 322 204 18 chr11 89430152 89430481 -59352991 + L2 LINE L2 1546 1935 -1379 662 325 21 17 chr11 89430501 89430790 -59352682 + L2 LINE L2 2310 2599 -715 210 366 57 80 chr11 89430953 89431305 -59352167 + L2 LINE L2 2882 3225 -47 231 330 35 17 chr11 89432386 89432501 -59350971 - L2 LINE L2 -224 3048 2932 1921 177 46 4 chr11 89432514 89432867 -59350605 + MLT1A1 LTR MaLR 2 363 -2 219 271 51 17 chr11 89433083 89433142 -59350330 + L2 LINE L2 3246 3306 -7 369 217 14 0 chr11 89433511 89433580 -59349892 - L2 LINE L2 -4 3268 3199 864 281 23 16 chr11 89433660 89433916 -59349556 + MIR SINE MIR 2 259 -3 417 329 60 64 chr11 89433994 89434450 -59349022 - L2 LINE L2 -194 3119 2654 249 226 137 39 chr11 89434477 89434579 -59348893 - MIR SINE MIR -70 192 81 213 156 22 44 chr11 89434782 89434827 -59348645 + L2 LINE L2 3229 3272 0 22 56 0 0 chr11 89435032 89435068 -59348404 + AT_rich Low_complexity Low_complexity 1 36 0 189 0 0 0 chr11 89435596 89435617 -59347855 + (T)n Simple_repeat Simple_repeat 1 21 0 480 243 41 59 chr11 89436004 89436173 -59347299 - MIR SINE MIR -49 213 48 184 211 0 39 chr11 89437583 89437635 -59345837 + L2 LINE L2 2988 3037 -235 599 283 87 11 chr11 89437655 89437920 -59345552 + L1MEc LINE L1 77 361 -6035 2616 255 139 37 chr11 89438003 89439387 -59344085 + L1MEc LINE L1 847 2371 -4025 21057 28 1 0 chr11 89439740 89443047 -59340425 - L1PA3 LINE L1 0 6155 2848 11441 35 1 1 chr11 89443047 89444435 -59339037 + L1PA3 LINE L1 1490 2877 -3269 1096 223 5 14 chr11 89444454 89444665 -59338807 - MER58A DNA MER1_type -3 221 13 1478 196 108 33 chr11 89444714 89445112 -59338360 + MSTC LTR MaLR 1 428 0 446 294 71 14 chr11 89445825 89446036 -59337436 + MIR SINE MIR 35 257 -5 392 262 75 0 chr11 89446643 89446750 -59336722 - MIR SINE MIR -66 196 82 443 286 146 11 chr11 89447048 89447226 -59336246 - MIR SINE MIR -10 252 51 1511 174 56 21 chr11 89448491 89448779 -59334693 - AluJb SINE Alu -14 298 1 204 67 0 0 chr11 89450481 89450511 -59332961 + (A)n Simple_repeat Simple_repeat 1 30 0 2312 105 0 0 chr11 89450519 89450825 -59332647 + AluSx SINE Alu 1 306 -6 1554 111 35 18 chr11 89451603 89451829 -59331643 - MER30 DNA MER1_type 0 230 1 208 355 91 16 chr11 89452430 89452551 -59330921 + L2 LINE L2 3184 3313 0 21 0 0 0 chr11 89453585 89453606 -59329866 + AT_rich Low_complexity Low_complexity 1 21 0 330 268 91 45 chr11 89453978 89454198 -59329274 + L1MC5 LINE L1 6992 7221 -740 231 269 124 74 chr11 89454352 89454731 -59328741 + L1MC5 LINE L1 7272 7669 -292 1113 299 62 78 chr11 89454967 89455281 -59328191 + L1MEd LINE L1 366 684 -5732 1478 175 0 150 chr11 89455281 89455715 -59327757 + MLT1A2 LTR MaLR 2 370 -4 1113 299 62 78 chr11 89455715 89455880 -59327592 + L1MEd LINE L1 684 850 -5566 1904 122 0 64 chr11 89455880 89456208 -59327264 + AluSc SINE Alu 1 307 -2 1113 299 62 78 chr11 89456208 89456791 -59326681 + L1MEd LINE L1 850 1412 -5004 256 326 42 35 chr11 89456956 89457100 -59326372 + L1MEd LINE L1 1409 1553 -4863 436 299 108 32 chr11 89457110 89457361 -59326111 + L1MEd LINE L1 1417 1686 -4740 643 275 115 26 chr11 89457496 89458070 -59325402 + L1MEd LINE L1 2915 3539 -2887 436 307 97 43 chr11 89458250 89458787 -59324685 + L1MEd LINE L1 3559 4124 -2302 238 301 43 21 chr11 89459219 89459312 -59324160 - MLT1K LTR MaLR -492 96 2 336 65 0 0 chr11 89460070 89460116 -59323356 + Alu SINE Alu 247 292 -8 1710 221 53 99 chr11 89460548 89461156 -59322316 + MLT1E LTR MaLR 17 593 0 248 363 117 23 chr11 89461651 89461822 -59321650 + L3 LINE CR1 1388 1574 -3 22 0 0 0 chr11 89461889 89461911 -59321561 + AT_rich Low_complexity Low_complexity 1 22 0 279 373 49 0 chr11 89462833 89462935 -59320537 + L2 LINE L2 3201 3307 -6 233 221 95 32 chr11 89463463 89463558 -59319914 - HAL1 LINE L1 -179 2328 2228 257 290 90 7 chr11 89463644 89463799 -59319673 - HAL1b LINE L1 -433 915 748 391 274 62 0 chr11 89464422 89464535 -59318937 + MLT1E LTR MaLR 44 163 -430 26 82 0 0 chr11 89464591 89464652 -59318820 + AT_rich Low_complexity Low_complexity 1 61 0 22 0 0 0 chr11 89466658 89466680 -59316792 + AT_rich Low_complexity Low_complexity 1 22 0 483 224 212 39 chr11 89468377 89468636 -59314836 + L1MC4a LINE L1 5736 6039 -1769 349 281 94 8 chr11 89469218 89469346 -59314126 + MIR SINE MIR 108 246 -16 572 219 43 194 chr11 89469820 89470099 -59313373 - MIR SINE MIR -10 252 16 345 250 102 0 chr11 89470709 89470837 -59312635 - L1ME3A LINE L1 -205 5965 5825 2086 121 31 0 chr11 89471118 89471407 -59312065 - AluSx SINE Alu -12 300 3 352 244 8 47 chr11 89471494 89471621 -59311851 - L1MDa LINE L1 -4512 2028 1907 470 242 97 59 chr11 89471824 89471857 -59311615 - L1MDa LINE L1 -4910 1620 1590 2126 122 24 0 chr11 89471857 89472152 -59311320 - AluSg SINE Alu -8 302 1 470 242 97 59 chr11 89472152 89472539 -59310933 - L1MDa LINE L1 -4940 1590 1184 1296 192 0 4 chr11 89472637 89472866 -59310606 - AluJb SINE Alu 0 312 85 386 248 44 0 chr11 89472915 89473028 -59310444 + L1MA8 LINE L1 6173 6290 -1 291 282 24 12 chr11 89473055 89473140 -59310332 - L1MDa LINE L1 -5982 548 463 21 0 0 0 chr11 89473382 89473403 -59310069 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr11 89473641 89473661 -59309811 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 644 304 135 9 chr11 89474598 89474947 -59308525 + MLT1J2 LTR MaLR 15 407 -43 1881 131 36 4 chr11 89476651 89476949 -59306523 - AluSx SINE Alu 0 307 1 223 305 157 43 chr11 89477558 89477703 -59305769 - MIR3 SINE MIR -67 141 2 186 143 0 0 chr11 89478146 89478181 -59305291 + (CAT)n Simple_repeat Simple_repeat 1 35 0 204 40 0 0 chr11 89478184 89478209 -59305263 + (TCC)n Simple_repeat Simple_repeat 3 27 0 498 302 112 6 chr11 89478219 89478388 -59305084 - MIR SINE MIR -4 258 72 476 249 39 97 chr11 89478489 89478746 -59304726 + L2 LINE L2 3070 3311 -2 1022 112 28 0 chr11 89478968 89479111 -59304361 - AluY SINE Alu -65 246 100 2295 69 3 13 chr11 89479830 89480134 -59303338 + AluY SINE Alu 1 301 -10 272 375 61 18 chr11 89480617 89480897 -59302575 + L2 LINE L2 2487 2778 -536 746 311 104 56 chr11 89481291 89481808 -59301664 + L2 LINE L2 2712 3259 -13 359 315 72 39 chr11 89482760 89483039 -59300433 - L2 LINE L2 -1 3312 3025 222 333 8 49 chr11 89483145 89483268 -59300204 + L2 LINE L2 2543 2660 -654 1640 173 0 69 chr11 89483537 89483872 -59299600 - AluJb SINE Alu 0 312 1 215 271 0 17 chr11 89484091 89484150 -59299322 + GA-rich Low_complexity Low_complexity 3 60 0 474 270 24 8 chr11 89484942 89485068 -59298404 - MIR3 SINE MIR -50 158 31 899 29 0 0 chr11 89485586 89485690 -59297782 - L1PA5 LINE L1 -9 6145 6042 370 335 166 28 chr11 89486053 89486378 -59297094 + L2 LINE L2 2556 2925 -389 435 285 35 14 chr11 89487337 89487481 -59295991 - MIR SINE MIR -48 214 68 273 282 26 39 chr11 89487459 89487537 -59295935 - MIR SINE MIR -88 120 44 * 2271 112 3 0 chr11 89487807 89488112 -59295360 - AluSq SINE Alu -7 306 1 188 226 16 0 chr11 89489343 89489405 -59294067 + (ATG)n Simple_repeat Simple_repeat 2 64 0 448 288 53 0 chr11 89489684 89489816 -59293656 - MIR SINE MIR -71 191 53 445 266 89 0 chr11 89491354 89491478 -59291994 + MIR SINE MIR 97 231 -31 593 298 76 17 chr11 89492943 89493181 -59290291 + MIR SINE MIR 11 262 0 496 331 51 28 chr11 89493791 89494045 -59289427 + MIR SINE MIR 2 261 -1 226 321 0 0 chr11 89494331 89494387 -59289085 + L2 LINE L2 3217 3272 0 469 315 60 51 chr11 89494402 89494637 -59288835 + MIR SINE MIR 14 250 -12 476 301 145 5 chr11 89495627 89495813 -59287659 - MIR SINE MIR -50 212 1 263 322 99 0 chr11 89496220 89496341 -59287131 + L2 LINE L2 3180 3312 -1 259 292 0 0 chr11 89496351 89496416 -59287056 + GA-rich Low_complexity Low_complexity 2 66 0 2797 22 0 0 chr11 89497889 89498200 -59285272 - AluYa5 SINE Alu 0 311 1 1630 185 60 10 chr11 89498202 89498537 -59284935 + MLT1A1 LTR MaLR 13 365 0 743 237 58 0 chr11 89498565 89498738 -59284734 + MER5A DNA MER1_type 7 189 0 411 355 43 41 chr11 89498738 89499176 -59284296 + L2 LINE L2 2618 3057 -215 878 127 19 13 chr11 89500363 89500521 -59282951 + L1MB4 LINE L1 6021 6179 -1 825 219 56 11 chr11 89501718 89501896 -59281576 - MIR SINE MIR -69 193 8 184 289 7 127 chr11 89503457 89503599 -59279873 + MIR SINE MIR 22 146 -116 840 276 53 4 chr11 89503604 89503850 -59279622 + MIR SINE MIR 5 262 0 282 206 0 0 chr11 89504446 89504509 -59278963 + GA-rich Low_complexity Low_complexity 4 66 0 293 270 125 25 chr11 89504542 89504706 -59278766 - MIR SINE MIR -55 207 18 1511 209 32 49 chr11 89505632 89506001 -59277471 - MLT1A2 LTR MaLR -11 363 1 248 310 58 11 chr11 89506444 89506531 -59276941 - L2 LINE L2 -39 3274 3184 257 262 95 24 chr11 89506574 89506700 -59276772 - MIR SINE MIR -124 138 4 439 274 91 87 chr11 89507267 89507389 -59276083 + MIR SINE MIR 16 141 -121 2218 113 0 10 chr11 89507389 89507699 -59275773 + AluSc SINE Alu 1 307 -2 439 274 91 87 chr11 89507699 89507806 -59275666 + MIR SINE MIR 141 246 -16 24 0 0 0 chr11 89508334 89508358 -59275114 + AT_rich Low_complexity Low_complexity 1 24 0 185 234 0 0 chr11 89508955 89509002 -59274470 - MIR SINE MIR -44 218 172 600 244 35 6 chr11 89509026 89509198 -59274274 + MER104 DNA MER2_type 2 178 -2 319 375 105 25 chr11 89509212 89509672 -59273800 - L2 LINE L2 -35 3237 2742 276 291 99 43 chr11 89509650 89509791 -59273681 - MIR SINE MIR -34 174 26 * 1631 177 20 14 chr11 89509978 89510272 -59273200 + AluSx SINE Alu 1 296 -16 1769 166 7 13 chr11 89511070 89511371 -59272101 + AluJb SINE Alu 3 301 -11 338 269 166 21 chr11 89511692 89511837 -59271635 + MIR SINE MIR 42 207 -55 195 42 0 0 chr11 89512151 89512175 -59271297 + (A)n Simple_repeat Simple_repeat 1 24 0 27 29 0 0 chr11 89512496 89512530 -59270942 + AT_rich Low_complexity Low_complexity 1 34 0 35 0 0 0 chr11 89515691 89515726 -59267746 + AT_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr11 89516206 89516227 -59267245 + (CAA)n Simple_repeat Simple_repeat 1 21 0 269 306 51 31 chr11 89516308 89516406 -59267066 + L2 LINE L2 3173 3272 0 318 195 115 11 chr11 89516453 89516540 -59266932 + MIR3 SINE MIR 111 206 -2 180 182 0 0 chr11 89517909 89517942 -59265530 - L3b LINE CR1 -114 1469 1437 1418 191 0 23 chr11 89518365 89518651 -59264821 - AluJo SINE Alu 0 314 35 3675 108 4 2 chr11 89519029 89519566 -59263906 - L1P LINE L1 -1172 4974 4437 2438 60 24 62 chr11 89519566 89519932 -59263540 + L1PA7 LINE L1 5786 6141 -13 294 29 0 0 chr11 89519935 89519970 -59263502 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 235 235 0 0 chr11 89520465 89520516 -59262956 - L1MC4 LINE L1 -65 7977 7927 235 296 80 0 chr11 89520640 89520728 -59262744 - L1ME LINE L1 -462 5659 5565 497 229 124 0 chr11 89520841 89521068 -59262404 - L1M3 LINE L1 -733 5447 5199 2132 106 28 31 chr11 89521267 89521626 -59261846 + L1PA11 LINE L1 5816 6173 -1 246 128 0 0 chr11 89521702 89521741 -59261731 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2135 113 7 29 chr11 89522034 89522344 -59261128 - AluSq SINE Alu -10 303 1 227 269 87 58 chr11 89522626 89522730 -59260742 - HAL1 LINE L1 -911 1596 1490 455 292 78 67 chr11 89522813 89522867 -59260605 - L1MEd LINE L1 -4871 1248 1196 2571 46 0 0 chr11 89522867 89523172 -59260300 + AluY SINE Alu 1 305 -6 455 292 78 67 chr11 89523172 89523820 -59259652 - L1MEd LINE L1 -4923 1196 538 264 333 67 20 chr11 89523909 89524059 -59259413 - L1MEd LINE L1 -5713 406 250 362 267 30 30 chr11 89524431 89524562 -59258910 + MIR SINE MIR 132 262 0 216 0 0 0 chr11 89524895 89524919 -59258553 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 204 329 24 12 chr11 89526039 89526121 -59257351 + L2 LINE L2 3231 3313 0 228 169 0 62 chr11 89526386 89526451 -59257021 - MER5C DNA MER1_type -35 289 229 437 202 71 38 chr11 89526895 89527078 -59256394 + MER113 DNA MER1_type? 43 231 -290 354 319 71 7 chr11 89527254 89527395 -59256077 - MIR SINE MIR -66 196 47 380 323 95 32 chr11 89527928 89528117 -59255355 + L2 LINE L2 3093 3293 -20 548 82 24 0 chr11 89528184 89528269 -59255203 + L1PA16 LINE L1 6071 6157 -9 702 270 104 43 chr11 89528833 89529178 -59254294 - L2 LINE L2 0 3313 2948 346 92 15 31 chr11 89529361 89529426 -59254046 + (GGA)n Simple_repeat Simple_repeat 3 66 0 1517 286 49 47 chr11 89529456 89530008 -59253464 - L2 LINE L2 -414 2900 2348 501 231 120 0 chr11 89530012 89530129 -59253343 + FLAM_A SINE Alu 2 132 -1 558 168 80 29 chr11 89530172 89530312 -59253160 + L1MA4 LINE L1 6157 6298 -2 520 278 294 5 chr11 89530325 89530519 -59252953 - L2 LINE L2 -952 2362 2113 542 306 6 11 chr11 89530581 89530761 -59252711 - L2 LINE L2 -2227 1087 909 484 288 123 23 chr11 89530827 89531046 -59252426 - MIR SINE MIR -8 254 14 1890 249 48 21 chr11 89531624 89532230 -59251242 + L1ME1 LINE L1 5539 6160 -6 372 272 56 8 chr11 89533619 89533744 -59249728 - MIR SINE MIR -1 261 131 * 454 310 245 26 chr11 89533719 89534103 -59249369 + L2 LINE L2 2832 3299 -14 345 285 81 24 chr11 89534439 89534562 -59248910 - L2 LINE L2 0 3272 3143 408 306 77 27 chr11 89535441 89535738 -59247734 - L1ME LINE L1 -399 5722 5411 841 275 57 9 chr11 89536085 89536314 -59247158 - MIR SINE MIR -10 252 13 321 375 45 5 chr11 89536347 89536547 -59246925 - L1ME LINE L1 -1197 4949 4742 21 36 0 0 chr11 89536949 89536977 -59246495 + AT_rich Low_complexity Low_complexity 1 28 0 261 300 107 50 chr11 89537117 89537593 -59245879 - L1ME LINE L1 -2013 4133 3631 343 301 97 0 chr11 89537950 89538053 -59245419 - L2 LINE L2 0 3313 3201 311 309 61 61 chr11 89538397 89538627 -59244845 - MIR SINE MIR -27 235 6 25 0 0 0 chr11 89538692 89538717 -59244755 + AT_rich Low_complexity Low_complexity 1 25 0 370 308 67 10 chr11 89539054 89539158 -59244314 + L2 LINE L2 3160 3269 -3 355 319 17 17 chr11 89539257 89539376 -59244096 + MIR3 SINE MIR 89 207 -1 217 350 104 18 chr11 89540275 89540438 -59243034 - MIR3 SINE MIR -17 191 15 230 383 75 0 chr11 89540867 89540961 -59242511 + L2 LINE L2 3145 3245 -27 234 359 71 41 chr11 89541348 89541518 -59241954 - L2 LINE L2 -8 3264 3090 215 362 21 11 chr11 89541612 89541706 -59241766 + MIR SINE MIR 38 132 -76 * 243 336 150 36 chr11 89541702 89541922 -59241550 + MIR SINE MIR 18 262 0 205 284 14 0 chr11 89541988 89542062 -59241410 + (TA)n Simple_repeat Simple_repeat 1 75 0 427 304 17 13 chr11 89543247 89543484 -59239988 + L1MC4a LINE L1 4824 5061 -1085 1207 292 53 14 chr11 89543641 89544073 -59239399 + L1MC4a LINE L1 5261 5709 -2099 989 282 56 15 chr11 89544068 89544405 -59239067 + L1MC4a LINE L1 6434 6784 -1024 * 267 231 15 15 chr11 89544412 89544477 -59238995 + L1MC4 LINE L1 6948 7012 -1030 377 237 26 0 chr11 89544668 89544782 -59238690 + L1MC4 LINE L1 7925 8041 -1 238 267 65 46 chr11 89544809 89545026 -59238446 + L1MC5 LINE L1 7479 7699 -262 249 264 0 0 chr11 89545045 89545117 -59238355 + L1MC4 LINE L1 7864 7935 -107 2095 151 17 9 chr11 89547058 89547402 -59236070 - MER7A DNA MER2_type -1 345 1 244 365 176 18 chr11 89547569 89547791 -59235681 - L2 LINE L2 -2 3270 3014 531 288 14 51 chr11 89548389 89548604 -59234868 + MER66-int LTR ERV1 2950 3156 -3520 3831 171 50 21 chr11 89549016 89549882 -59233590 + MER66-int LTR ERV1 938 2270 0 446 296 53 58 chr11 89550227 89550416 -59233056 - MIR3 SINE MIR -4 204 17 341 276 149 9 chr11 89551793 89551942 -59231530 - MIR3 SINE MIR -63 145 1 263 125 321 0 chr11 89552825 89552881 -59230591 - MER63 DNA MER1_type -82 754 681 478 395 21 0 chr11 89552986 89553176 -59230296 + MER91A DNA MER1_type 3 196 0 326 312 46 9 chr11 89553353 89553462 -59230010 - MIR SINE MIR -121 141 29 1162 223 148 42 chr11 89553821 89554232 -59229240 + MLT1G3 LTR MaLR 81 583 -7 276 246 0 0 chr11 89554279 89554336 -59229136 + L2 LINE L2 3256 3312 -1 1976 155 0 0 chr11 89554444 89554747 -59228725 + AluSp SINE Alu 1 303 -10 738 256 62 24 chr11 89555130 89555341 -59228131 - MIR SINE MIR -26 236 18 233 314 136 0 chr11 89555419 89555537 -59227935 + MIR SINE MIR 115 248 -14 529 250 128 20 chr11 89555565 89555868 -59227604 - L1ME4a LINE L1 -182 5939 5598 180 111 0 0 chr11 89557769 89557796 -59225676 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 242 294 64 28 chr11 89557837 89557946 -59225526 + MIR SINE MIR 24 136 -126 1962 122 59 0 chr11 89557983 89558270 -59225202 - AluSx SINE Alu -8 304 1 347 269 82 22 chr11 89558270 89558404 -59225068 + MIR SINE MIR 121 262 0 379 314 45 26 chr11 89558646 89558802 -59224670 + MIR SINE MIR 99 257 -5 180 0 0 0 chr11 89559394 89559414 -59224058 + (CAAAA)n Simple_repeat Simple_repeat 4 23 0 295 309 110 7 chr11 89559697 89559833 -59223639 + MIR SINE MIR 63 212 -50 205 214 57 14 chr11 89560057 89560127 -59223345 + (TGAA)n Simple_repeat Simple_repeat 1 73 0 2159 101 7 0 chr11 89560384 89560681 -59222791 + AluSx SINE Alu 3 301 -11 597 306 53 58 chr11 89561302 89561701 -59221771 + MLT1I LTR MaLR 6 402 -7 441 277 144 35 chr11 89562154 89562356 -59221116 - MIR SINE MIR -8 254 31 282 272 22 11 chr11 89563019 89563111 -59220361 - MLT1I LTR MaLR 0 409 317 318 246 8 41 chr11 89567105 89567227 -59216245 + GA-rich Low_complexity Low_complexity 2 119 0 519 290 66 16 chr11 89567339 89567522 -59215950 + MIR SINE MIR 59 250 -12 249 108 0 0 chr11 89568114 89568151 -59215321 + (TG)n Simple_repeat Simple_repeat 2 38 0 297 308 133 7 chr11 89568157 89568300 -59215172 - MIR SINE MIR -73 189 29 2166 111 54 20 chr11 89568388 89568740 -59214732 + THE1B LTR MaLR 1 364 0 629 326 43 22 chr11 89569679 89569909 -59213563 + MIR SINE MIR 7 241 -21 239 242 16 0 chr11 89569923 89569985 -59213487 + (CAT)n Simple_repeat Simple_repeat 3 65 0 521 234 106 64 chr11 89570827 89571045 -59212427 + MIR SINE MIR 22 248 -14 215 274 0 0 chr11 89572224 89572286 -59211186 + (CA)n Simple_repeat Simple_repeat 2 63 0 509 279 198 57 chr11 89572286 89572818 -59210654 + L2 LINE L2 2694 3312 -1 193 304 200 9 chr11 89572974 89573089 -59210383 + L2 LINE L2 3176 3312 -1 24 53 0 0 chr11 89573901 89573939 -59209533 + AT_rich Low_complexity Low_complexity 1 38 0 205 335 76 51 chr11 89573969 89574127 -59209345 + L2 LINE L2 3152 3313 0 244 345 146 18 chr11 89574192 89574412 -59209060 + MIR SINE MIR 8 255 -7 272 277 22 34 chr11 89574486 89574587 -59208885 - MIR SINE MIR -66 142 43 196 301 96 96 chr11 89575968 89576177 -59207295 - MIR SINE MIR -46 216 8 494 304 141 11 chr11 89576347 89576538 -59206934 + MIR SINE MIR 13 228 -34 285 172 0 0 chr11 89576935 89576999 -59206473 + CT-rich Low_complexity Low_complexity 1 64 0 271 354 0 0 chr11 89577065 89577161 -59206311 + MIR SINE MIR 4 99 -163 491 256 132 41 chr11 89577188 89577454 -59206018 - L2 LINE L2 0 3313 3024 2003 130 0 7 chr11 89578513 89578814 -59204658 + AluSx SINE Alu 1 299 -13 206 261 128 23 chr11 89579137 89579278 -59204194 + MIR SINE MIR 41 193 -15 605 204 6 22 chr11 89579285 89579466 -59204006 + CT-rich Low_complexity Low_complexity 1 178 0 1380 62 0 0 chr11 89579467 89579646 -59203826 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 1546 158 4 8 chr11 89579649 89579908 -59203564 - AluSx SINE Alu -33 279 22 294 256 56 22 chr11 89580492 89580582 -59202890 + MIR SINE MIR 159 251 -11 304 260 149 26 chr11 89581281 89581435 -59202037 - MIR SINE MIR 0 262 90 429 325 37 47 chr11 89582501 89582692 -59200780 - MIR SINE MIR 0 262 74 423 329 27 27 chr11 89582721 89582870 -59200602 + MIR SINE MIR 48 196 -66 1757 198 20 97 chr11 89583120 89583308 -59200164 + MLT1D LTR MaLR 1 202 -303 2661 13 0 0 chr11 89583308 89583606 -59199866 - AluYa5 SINE Alu -13 298 1 1757 198 20 97 chr11 89583606 89583962 -59199510 + MLT1D LTR MaLR 202 503 -2 362 307 82 132 chr11 89584361 89584641 -59198831 - L2 LINE L2 0 3272 3007 1904 198 11 3 chr11 89584760 89585128 -59198344 - L1P LINE L1 -2052 4094 3724 803 309 141 32 chr11 89585241 89585632 -59197840 + L2 LINE L2 2664 3130 -183 2223 87 23 0 chr11 89585632 89585931 -59197541 - AluSq SINE Alu -7 306 1 803 309 141 32 chr11 89585931 89586137 -59197335 + L2 LINE L2 3130 3312 -1 511 359 84 39 chr11 89586176 89586951 -59196521 + L1MEd LINE L1 298 1107 -5265 251 292 46 37 chr11 89587099 89587315 -59196157 + L1MEd LINE L1 1272 1489 -4895 279 0 0 0 chr11 89587326 89587357 -59196115 + (TTA)n Simple_repeat Simple_repeat 3 33 0 256 279 125 62 chr11 89587467 89587675 -59195797 - MIR SINE MIR -10 252 32 377 316 95 12 chr11 89587733 89587901 -59195571 + MIR SINE MIR 75 256 -6 284 0 28 0 chr11 89588041 89588077 -59195395 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 625 122 43 0 chr11 89588079 89588194 -59195278 - LTR9B LTR ERV1 -80 564 445 21 36 0 0 chr11 89588322 89588350 -59195122 + AT_rich Low_complexity Low_complexity 1 28 0 255 328 53 30 chr11 89588979 89589110 -59194362 - MER5A DNA MER1_type 0 189 56 385 241 146 43 chr11 89589145 89589316 -59194156 - MIR SINE MIR -75 187 10 701 226 36 3 chr11 89589778 89589988 -59193484 + L1MEd LINE L1 1400 1677 -4705 2903 85 10 0 chr11 89589990 89590392 -59193080 + L1PA8 LINE L1 5764 6169 -3 5940 143 37 18 chr11 89590401 89592196 -59191276 + L1MA2 LINE L1 4475 6304 0 6670 219 29 14 chr11 89592202 89592508 -59190964 + L1MEd LINE L1 2136 2436 -3946 360 0 0 0 chr11 89592508 89592548 -59190924 + (CA)n Simple_repeat Simple_repeat 2 41 0 6670 219 29 14 chr11 89592548 89594117 -59189355 + L1MEd LINE L1 2436 4038 -2344 238 229 0 0 chr11 89594147 89594195 -59189277 + L1MA8 LINE L1 5018 5065 -1081 * 239 54 0 0 chr11 89594194 89594231 -59189241 + L1PA2 LINE L1 6114 6150 -5 302 45 23 0 chr11 89594237 89594281 -59189191 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 4623 148 18 14 chr11 89594301 89595305 -59188167 + L1MA8 LINE L1 5057 6064 -227 925 305 126 29 chr11 89597264 89597788 -59185684 - L3 LINE CR1 -72 1505 931 430 323 21 31 chr11 89598581 89598773 -59184699 + MIR3 SINE MIR 16 205 -3 250 273 18 0 chr11 89598895 89598950 -59184522 + MER91A DNA MER1_type 139 194 -2 2195 106 0 28 chr11 89599110 89599431 -59184041 + AluSx SINE Alu 1 312 0 189 311 66 0 chr11 89599441 89599502 -59183970 + MIR3 SINE MIR 123 187 -21 416 314 142 18 chr11 89600433 89600659 -59182813 - MIR SINE MIR -3 259 6 1424 122 41 0 chr11 89601236 89601457 -59182015 + MER30 DNA MER1_type 1 230 0 24 0 0 0 chr11 89602082 89602106 -59181366 + AT_rich Low_complexity Low_complexity 1 24 0 251 334 126 60 chr11 89602279 89603010 -59180462 + L2 LINE L2 2064 2842 -472 21 0 0 0 chr11 89603326 89603347 -59180125 + AT_rich Low_complexity Low_complexity 1 21 0 370 262 8 32 chr11 89603352 89603478 -59179994 - MER103 DNA DNA 0 166 44 1664 144 25 68 chr11 89603704 89604007 -59179465 + MER44D DNA MER2_type 2 559 -1932 2630 33 0 0 chr11 89604007 89604309 -59179163 - AluY SINE Alu -9 302 1 1664 144 25 68 chr11 89604309 89604358 -59179114 + MER44D DNA MER2_type 559 609 0 527 247 51 13 chr11 89604910 89605068 -59178404 - MER104 DNA Tc2 -12 168 5 414 57 0 0 chr11 89605114 89605167 -59178305 + (TC)n Simple_repeat Simple_repeat 1 53 0 226 156 172 62 chr11 89605315 89605379 -59178093 + L2 LINE L2 3234 3304 -9 611 243 81 22 chr11 89606141 89606326 -59177146 - MER63A DNA MER1_type 0 210 15 5856 180 18 5 chr11 89606415 89608180 -59175292 + L1PA15 LINE L1 4030 5817 -348 1092 110 0 4 chr11 89608180 89608371 -59175101 + AluSg SINE Alu 36 306 -6 2255 131 3 0 chr11 89608380 89608715 -59174757 + L1PA15 LINE L1 5817 6152 -13 189 0 0 0 chr11 89608719 89608740 -59174732 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 216 0 0 0 chr11 89609349 89609373 -59174099 + (T)n Simple_repeat Simple_repeat 1 24 0 1479 204 4 4 chr11 89609747 89610021 -59173451 - AluJo SINE Alu -32 280 7 666 352 47 36 chr11 89610227 89610611 -59172861 - L3 LINE CR1 -8 1569 1182 23 68 0 0 chr11 89610660 89610704 -59172768 + AT_rich Low_complexity Low_complexity 1 44 0 279 0 0 0 chr11 89611138 89611169 -59172303 + (A)n Simple_repeat Simple_repeat 1 31 0 21 0 0 0 chr11 89611263 89611284 -59172188 + AT_rich Low_complexity Low_complexity 1 21 0 244 322 9 61 chr11 89613449 89613564 -59169908 - MIR SINE MIR -119 143 35 371 324 58 60 chr11 89613872 89614335 -59169137 + L2 LINE L2 2371 2832 -482 2124 98 3 7 chr11 89614342 89614637 -59168835 - AluSx SINE Alu -18 294 1 23 0 0 0 chr11 89614670 89614693 -59168779 + AT_rich Low_complexity Low_complexity 1 23 0 701 80 40 40 chr11 89614719 89614844 -59168628 - L1MB2 LINE L1 0 6171 6047 349 356 85 23 chr11 89614860 89615037 -59168435 + L2 LINE L2 3077 3264 -8 184 245 104 57 chr11 89615446 89615552 -59167920 - L2 LINE L2 -295 2977 2867 386 299 95 32 chr11 89615686 89615907 -59167565 + LTR16A1 LTR ERVL 210 444 -13 237 291 162 27 chr11 89616346 89616494 -59166978 - MIR SINE MIR -64 198 31 937 50 0 0 chr11 89616813 89616933 -59166539 - L1PA5 LINE L1 -1513 4633 4514 7230 42 2 1 chr11 89616935 89618446 -59165026 + L1PA5 LINE L1 4638 6167 0 430 346 35 79 chr11 89618624 89618939 -59164533 + L2 LINE L2 2971 3271 -1 297 75 0 0 chr11 89619357 89619397 -59164075 + (GA)n Simple_repeat Simple_repeat 1 40 0 209 343 37 30 chr11 89619668 89619802 -59163670 + L2 LINE L2 3179 3313 0 306 281 93 93 chr11 89620724 89620863 -59162609 + L2 LINE L2 3134 3272 0 287 299 125 42 chr11 89621632 89621776 -59161696 - MIR SINE MIR -76 186 31 336 362 121 5 chr11 89621777 89622001 -59161471 + MIR SINE MIR 2 251 -11 219 351 0 0 chr11 89622598 89622709 -59160763 + (CCA)n Simple_repeat Simple_repeat 1 111 0 2074 153 0 0 chr11 89622977 89623284 -59160188 - AluSx SINE Alu -5 307 1 2407 134 38 21 chr11 89623323 89623742 -59159730 + MSTA LTR MaLR 3 428 0 613 306 73 20 chr11 89624177 89624425 -59159047 + MIR SINE MIR 2 262 0 386 290 0 40 chr11 89624671 89624771 -59158701 - L2 LINE L2 -8 3264 3169 343 359 112 22 chr11 89624763 89625075 -59158397 + L2 LINE L2 2928 3267 -5 * 3766 32 7 4 chr11 89625511 89625972 -59157500 - L1PA4 LINE L1 -2 6153 5692 450 338 57 5 chr11 89626749 89626959 -59156513 + MIR SINE MIR 31 251 -11 2051 145 0 7 chr11 89626972 89627282 -59156190 - AluSx SINE Alu -3 309 2 384 22 0 0 chr11 89627343 89627388 -59156084 + (CA)n Simple_repeat Simple_repeat 2 46 0 369 274 40 40 chr11 89627973 89628097 -59155375 - L2 LINE L2 0 3313 3190 496 282 45 13 chr11 89628733 89628889 -59154583 - MIR SINE MIR -51 211 51 201 257 193 46 chr11 89629257 89629366 -59154106 + L2 LINE L2 3148 3272 0 291 270 132 13 chr11 89629816 89629968 -59153504 + L2 LINE L2 3140 3309 -4 277 308 39 51 chr11 89629970 89630126 -59153346 + L2 LINE L2 2621 2774 -540 268 190 76 0 chr11 89630614 89630693 -59152779 - HsTC2 DNA Tc2 -1811 87 3 622 336 88 43 chr11 89631556 89631692 -59151780 - L2 LINE L2 -26 3287 3159 2156 102 3 0 chr11 89631692 89631976 -59151496 + AluSp SINE Alu 1 285 -28 622 336 88 43 chr11 89631976 89632409 -59151063 - L2 LINE L2 -154 3159 2685 3052 176 17 37 chr11 89632409 89633056 -59150416 + L1MB2 LINE L1 5531 6164 -7 622 336 88 43 chr11 89633056 89633179 -59150293 - L2 LINE L2 -628 2685 2569 1126 156 57 5 chr11 89633664 89633876 -59149596 + MER30 DNA MER1_type 6 228 -2 650 96 0 0 chr11 89633995 89634089 -59149383 - L1PA12 LINE L1 -213 5955 5862 1493 189 63 61 chr11 89634313 89634709 -59148763 + MLT2C1 LTR ERVL 1 397 0 374 258 59 118 chr11 89634726 89635202 -59148270 - L1ME3A LINE L1 -219 5951 5504 343 330 0 0 chr11 89635254 89635354 -59148118 - L2 LINE L2 -780 2534 2435 191 219 0 0 chr11 89637496 89637528 -59145944 - L2 LINE L2 -21 3292 3261 417 366 15 8 chr11 89638125 89638259 -59145213 - L2 LINE L2 -4 3268 3134 418 333 43 98 chr11 89638555 89638882 -59144590 + L2 LINE L2 2956 3264 -8 27 49 0 0 chr11 89639540 89639581 -59143891 + AT_rich Low_complexity Low_complexity 1 41 0 1729 172 3 10 chr11 89639965 89640255 -59143217 - AluJb SINE Alu 0 312 25 297 234 0 52 chr11 89640337 89640414 -59143058 + L2 LINE L2 3240 3312 -1 186 325 0 48 chr11 89641022 89641105 -59142367 + MIR3 SINE MIR 81 159 -49 6933 50 24 0 chr11 89642264 89643176 -59140296 - L1PA5 LINE L1 0 6154 5235 10658 71 3 1 chr11 89643277 89644758 -59138714 - L1PA5 LINE L1 -1063 5083 3600 231 247 141 12 chr11 89645425 89645510 -59137962 + MIR3 SINE MIR 112 207 -1 28 29 0 0 chr11 89645859 89645894 -59137578 + AT_rich Low_complexity Low_complexity 1 35 0 237 353 58 19 chr11 89646028 89646184 -59137288 + MIR SINE MIR 8 169 -93 270 189 19 0 chr11 89646303 89646356 -59137116 + L2 LINE L2 3258 3311 -2 232 406 40 0 chr11 89646498 89646599 -59136873 + L2 LINE L2 3109 3213 -59 2072 126 0 13 chr11 89646717 89647018 -59136454 - AluSx SINE Alu -15 297 1 2427 240 34 50 chr11 89648479 89648982 -59134490 + L1M3b LINE L1 6 495 -5786 1960 145 7 0 chr11 89648982 89649278 -59134194 + AluSx SINE Alu 1 298 -14 2427 240 34 50 chr11 89649278 89649507 -59133965 + L1M3b LINE L1 495 726 -5555 * 2451 274 33 31 chr11 89649506 89650425 -59133047 + L1M3b LINE L1 628 1529 -4752 383 324 51 99 chr11 89651010 89651303 -59132169 + L2 LINE L2 2966 3244 -28 272 274 11 17 chr11 89651977 89652156 -59131316 + CT-rich Low_complexity Low_complexity 3 180 0 362 313 24 54 chr11 89652627 89652793 -59130679 - MIR SINE MIR 0 262 102 993 47 0 0 chr11 89652826 89652953 -59130519 - L1PA4 LINE L1 -3 6152 6026 937 267 56 19 chr11 89652983 89653300 -59130172 + MLT1H LTR MaLR 1 372 -177 1502 242 42 30 chr11 89653388 89653814 -59129658 + LTR40c LTR ERVL 35 465 0 508 253 77 72 chr11 89654691 89654885 -59128587 - MIR3 SINE MIR -7 201 7 391 346 39 73 chr11 89655513 89656030 -59127442 + L2 LINE L2 2359 2857 -457 1301 106 28 5 chr11 89656306 89656523 -59126949 - L1MA2 LINE L1 -7 6297 6076 304 266 97 53 chr11 89656611 89656724 -59126748 + MER5B DNA MER1_type 2 119 -59 * 491 325 164 12 chr11 89656715 89657044 -59126428 + L2 LINE L2 2910 3288 -25 243 263 18 0 chr11 89657187 89657244 -59126228 - L2 LINE L2 -211 3061 3004 181 77 0 0 chr11 89657360 89657386 -59126086 - L2 LINE L2 -350 2963 2938 2460 100 11 3 chr11 89657651 89658001 -59125471 + THE1A LTR MaLR 1 353 -2 10978 112 10 3 chr11 89658003 89659573 -59123899 + THE1A-int LTR MaLR 1 1580 0 2608 101 0 3 chr11 89659573 89659929 -59123543 + THE1A LTR MaLR 1 355 0 306 0 0 0 chr11 89659944 89659978 -59123494 + (TG)n Simple_repeat Simple_repeat 2 35 0 239 351 48 36 chr11 89660213 89660378 -59123094 - L2 LINE L2 -262 3010 2844 418 330 134 34 chr11 89660478 89660887 -59122585 - L2 LINE L2 -643 2671 2222 2215 100 0 0 chr11 89662398 89662689 -59120783 + AluSc SINE Alu 19 309 0 190 277 169 36 chr11 89662745 89662828 -59120644 - MIR SINE MIR -123 139 46 28 48 0 0 chr11 89663053 89663095 -59120377 + AT_rich Low_complexity Low_complexity 1 42 0 345 172 32 0 chr11 89663187 89663280 -59120192 + (TA)n Simple_repeat Simple_repeat 2 97 0 21 36 0 0 chr11 89663307 89663335 -59120137 + AT_rich Low_complexity Low_complexity 1 28 0 262 265 73 73 chr11 89663461 89663612 -59119860 + L3b LINE CR1 1221 1371 -212 589 267 138 56 chr11 89664534 89665163 -59118309 - L1ME3 LINE L1 -218 5944 5266 1199 185 0 75 chr11 89665163 89665417 -59118055 - AluJo SINE Alu -77 235 1 270 0 0 0 chr11 89665426 89665456 -59118016 + (T)n Simple_repeat Simple_repeat 1 30 0 2844 13 0 0 chr11 89665622 89665933 -59117539 - AluYa5 SINE Alu 0 311 1 382 213 113 27 chr11 89666016 89666166 -59117306 - L1 LINE L1 -1076 5070 4908 382 202 85 0 chr11 89666166 89666260 -59117212 - MIR SINE MIR -65 197 96 495 291 91 17 chr11 89666284 89666700 -59116772 - L1 LINE L1 -1314 4832 4386 2108 117 3 3 chr11 89666820 89667110 -59116362 + AluSx SINE Alu 8 297 -15 484 296 54 4 chr11 89667130 89667410 -59116062 - L1MCa LINE L1 -3609 2817 2524 270 137 20 20 chr11 89667420 89667471 -59116001 + U2 snRNA snRNA 1 51 -137 227 196 0 0 chr11 89667507 89667553 -59115919 - L1MCa LINE L1 -3955 2473 2428 314 276 98 30 chr11 89667555 89667758 -59115714 - L1MCa LINE L1 -4022 2404 2188 327 191 214 0 chr11 89669102 89669186 -59114286 - L2 LINE L2 -5 3267 3166 1570 90 0 0 chr11 89669493 89669705 -59113767 + MER41B LTR ERV1 1 212 -423 1447 97 5 19 chr11 89669709 89669925 -59113547 + MER41B LTR ERV1 423 635 0 309 51 0 0 chr11 89672168 89672207 -59111265 + (TG)n Simple_repeat Simple_repeat 2 40 0 209 56 0 28 chr11 89672260 89672296 -59111176 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1954 144 20 7 chr11 89672328 89672626 -59110846 + AluSx SINE Alu 1 302 -10 540 191 52 17 chr11 89672670 89672785 -59110687 + MER5B DNA MER1_type 4 122 -56 1789 167 7 7 chr11 89672805 89673099 -59110373 - AluJo SINE Alu -18 294 1 2503 77 7 0 chr11 89673313 89673759 -59109713 + L1PA7 LINE L1 5044 5491 -663 869 96 0 0 chr11 89673776 89673891 -59109581 + AluY SINE Alu 18 132 -179 207 0 0 0 chr11 89673891 89673914 -59109558 + (A)n Simple_repeat Simple_repeat 1 23 0 180 0 0 0 chr11 89673914 89673934 -59109538 + (G)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr11 89673950 89673973 -59109499 + GC_rich Low_complexity Low_complexity 1 23 0 712 100 9 9 chr11 89674076 89674175 -59109297 + AluSg/x SINE Alu 190 291 -18 5186 62 3 9 chr11 89674175 89674858 -59108614 + L1PA7 LINE L1 5476 6154 0 338 250 24 0 chr11 89674920 89675004 -59108468 - MER103 DNA DNA -69 97 12 202 186 23 0 chr11 89675387 89675430 -59108042 - L2 LINE L2 0 3272 3229 239 301 107 10 chr11 89675746 89675849 -59107623 - L2 LINE L2 -591 2723 2611 1526 168 0 30 chr11 89676197 89676459 -59107013 - AluJb SINE Alu -58 254 1 315 49 0 0 chr11 89677231 89677272 -59106200 + (TC)n Simple_repeat Simple_repeat 2 42 0 1661 151 0 60 chr11 89677273 89677572 -59105900 - AluSq SINE Alu -32 281 1 431 291 117 24 chr11 89677597 89677810 -59105662 + L3 LINE CR1 1332 1564 -13 276 228 0 166 chr11 89677899 89677988 -59105484 - L2 LINE L2 -18 3295 3237 2229 121 3 0 chr11 89677988 89678293 -59105179 + AluSx SINE Alu 1 306 -6 276 228 0 166 chr11 89678293 89678348 -59105124 - L2 LINE L2 -76 3237 3175 360 245 51 79 chr11 89678751 89679005 -59104467 + L1MC5 LINE L1 7246 7470 -561 220 301 65 11 chr11 89679049 89679142 -59104330 - MIR SINE MIR -92 170 73 273 304 130 22 chr11 89679215 89679337 -59104135 - MIR3 SINE MIR -41 167 31 552 284 99 0 chr11 89679337 89679499 -59103973 + MER5B DNA MER1_type 1 178 0 1371 191 3 60 chr11 89679693 89680008 -59103464 + AluJo SINE Alu 1 297 -15 2005 140 0 0 chr11 89680012 89680297 -59103175 + AluSx SINE Alu 1 285 -27 1414 180 4 4 chr11 89680800 89681039 -59102433 + AluJb SINE Alu 1 239 -73 519 177 0 10 chr11 89681039 89681135 -59102337 + AluJb SINE Alu 183 277 -35 1060 64 26 0 chr11 89681135 89681291 -59102181 + (GAAA)n Simple_repeat Simple_repeat 1 160 0 194 91 30 0 chr11 89681292 89681325 -59102147 + (CAGG)n Simple_repeat Simple_repeat 4 37 0 187 319 97 18 chr11 89681532 89681645 -59101827 - MIR SINE MIR -66 142 21 180 152 0 0 chr11 89682280 89682313 -59101159 + (CA)n Simple_repeat Simple_repeat 2 34 0 330 277 134 45 chr11 89682417 89682619 -59100853 + L1ME LINE L1 5538 5757 -364 309 284 0 0 chr11 89683212 89683279 -59100193 - L2 LINE L2 -22 3291 3225 390 280 35 42 chr11 89683376 89683519 -59099953 - MIR SINE MIR -55 207 66 202 370 34 8 chr11 89683552 89683671 -59099801 + MIR3 SINE MIR 82 203 -5 221 310 101 54 chr11 89684341 89684470 -59099002 + L2 LINE L2 3138 3272 0 261 222 74 25 chr11 89684524 89684605 -59098867 + MIR3 SINE MIR 85 169 -39 199 184 105 26 chr11 89684721 89684797 -59098675 + L2 LINE L2 2400 2481 -833 636 247 19 19 chr11 89684880 89685034 -59098438 - L2 LINE L2 0 3313 3160 263 280 112 9 chr11 89685181 89685288 -59098184 - MIR SINE MIR -69 193 76 207 374 15 73 chr11 89685394 89685600 -59097872 - L2 LINE L2 -349 2965 2772 295 281 45 11 chr11 89685656 89685745 -59097727 - L2 LINE L2 -19 3294 3203 22 0 0 0 chr11 89686104 89686126 -59097346 + AT_rich Low_complexity Low_complexity 1 22 0 285 323 61 65 chr11 89686385 89686648 -59096824 - L1ME LINE L1 -451 5670 5409 310 262 74 49 chr11 89687521 89687643 -59095829 + L1ME4a LINE L1 5980 6104 -17 22 0 0 0 chr11 89687697 89687719 -59095753 + AT_rich Low_complexity Low_complexity 1 22 0 440 306 86 30 chr11 89688764 89688996 -59094476 + MIR SINE MIR 11 255 -7 793 259 40 36 chr11 89689952 89690176 -59093296 - MIR SINE MIR -30 232 8 867 267 24 12 chr11 89690270 89690517 -59092955 + MIR SINE MIR 13 262 0 286 287 102 0 chr11 89690668 89690776 -59092696 + MIR SINE MIR 88 206 -56 249 194 14 14 chr11 89690991 89691063 -59092409 + L1ME LINE L1 5709 5780 -341 402 287 38 19 chr11 89691105 89691262 -59092210 + L1MC/D LINE L1 5612 5771 -2037 30 83 0 0 chr11 89691350 89691422 -59092050 + AT_rich Low_complexity Low_complexity 1 72 0 22 0 0 0 chr11 89691459 89691481 -59091991 + AT_rich Low_complexity Low_complexity 1 22 0 345 307 67 114 chr11 89691939 89692152 -59091320 + L2 LINE L2 2873 3058 -214 393 22 0 0 chr11 89692152 89692198 -59091274 + (CA)n Simple_repeat Simple_repeat 2 47 0 345 307 67 114 chr11 89692198 89692404 -59091068 + L2 LINE L2 3058 3272 0 289 259 98 14 chr11 89692891 89693034 -59090438 + L1ME LINE L1 5651 5805 -316 1579 251 60 26 chr11 89693079 89693610 -59089862 - L1ME1 LINE L1 -9 6157 5609 31 58 0 0 chr11 89693789 89693841 -59089631 + AT_rich Low_complexity Low_complexity 1 52 0 346 321 130 11 chr11 89693849 89694033 -59089439 - MIR SINE MIR -10 252 47 413 345 30 10 chr11 89694541 89694744 -59088728 + MIR SINE MIR 56 262 0 256 300 25 0 chr11 89695231 89695311 -59088161 - L2 LINE L2 0 3313 3232 21 0 0 0 chr11 89696895 89696916 -59086556 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr11 89696950 89696971 -59086501 + (A)n Simple_repeat Simple_repeat 1 21 0 305 350 84 84 chr11 89697009 89697343 -59086129 - L2 LINE L2 0 3272 2939 199 312 65 65 chr11 89697753 89697846 -59085626 + MIR SINE MIR 67 159 -103 247 329 13 0 chr11 89697990 89698069 -59085403 - MIR SINE MIR -112 150 71 5159 73 7 0 chr11 89698117 89698791 -59084681 - L1PA7 LINE L1 0 6154 5476 181 344 143 75 chr11 89698799 89698827 -59084645 - L2 LINE L2 -1 3271 3246 394 252 22 30 chr11 89698827 89698962 -59084510 + MER94 DNA DNA 1 134 0 181 344 143 75 chr11 89698962 89699361 -59084111 - L2 LINE L2 -26 3246 2815 410 291 96 31 chr11 89699755 89700047 -59083425 + L1ME1 LINE L1 562 872 -5247 269 281 132 34 chr11 89700049 89700398 -59083074 + L1ME1 LINE L1 2502 2884 -3245 21 89 0 0 chr11 89700476 89700532 -59082940 + AT_rich Low_complexity Low_complexity 1 56 0 212 267 0 0 chr11 89700620 89700680 -59082792 + A-rich Low_complexity Low_complexity 1 60 0 312 242 61 0 chr11 89700688 89700787 -59082685 + L1ME1 LINE L1 3794 3898 -2231 594 295 135 47 chr11 89700908 89702227 -59081245 + L1ME1 LINE L1 4441 5889 -256 316 333 51 26 chr11 89702411 89702567 -59080905 - L2 LINE L2 -612 2702 2543 221 234 143 65 chr11 89704538 89704692 -59078780 - MIR SINE MIR 0 262 97 189 362 14 0 chr11 89705085 89705154 -59078318 + L2 LINE L2 3234 3303 -10 23 0 0 0 chr11 89705578 89705601 -59077871 + AT_rich Low_complexity Low_complexity 1 23 0 183 339 92 8 chr11 89705659 89705789 -59077683 - MIR SINE MIR -12 250 110 2748 3 0 10 chr11 89705988 89706290 -59077182 - AluYa5 SINE Alu -12 299 1 370 0 0 0 chr11 89707978 89708019 -59075453 + (TTTTA)n Simple_repeat Simple_repeat 2 80 0 2024 117 7 0 chr11 89708019 89708300 -59075172 - AluSx SINE Alu -1 323 1 2039 154 94 10 chr11 89708753 89709148 -59074324 - MSTA LTR MaLR 0 428 1 333 172 0 0 chr11 89709207 89709271 -59074201 + (TA)n Simple_repeat Simple_repeat 1 64 0 293 290 0 21 chr11 89709271 89709364 -59074108 + MIR SINE MIR 156 246 -16 284 341 47 0 chr11 89709447 89709532 -59073940 - L2 LINE L2 -17 3255 3167 225 344 83 0 chr11 89709920 89710016 -59073456 + L2 LINE L2 3208 3311 -2 221 313 72 12 chr11 89710768 89710851 -59072621 + L2 LINE L2 3210 3297 -16 252 421 0 0 chr11 89710878 89711004 -59072468 + GA-rich Low_complexity Low_complexity 3 128 0 22 0 0 0 chr11 89711666 89711688 -59071784 + AT_rich Low_complexity Low_complexity 1 22 0 360 0 0 0 chr11 89712109 89712149 -59071323 + (TC)n Simple_repeat Simple_repeat 1 40 0 360 0 0 0 chr11 89712148 89712188 -59071284 + (CA)n Simple_repeat Simple_repeat 1 40 0 271 252 44 104 chr11 89712303 89712438 -59071034 + L2 LINE L2 3187 3313 0 578 293 121 0 chr11 89712917 89713132 -59070340 + MIR SINE MIR 11 251 -11 281 393 29 23 chr11 89714279 89714452 -59069020 + L2 LINE L2 2712 2885 -429 215 250 115 48 chr11 89714754 89714858 -59068614 + L2 LINE L2 3200 3310 -3 189 0 0 0 chr11 89715145 89715166 -59068306 + (CATA)n Simple_repeat Simple_repeat 1 21 0 222 380 50 0 chr11 89715254 89715354 -59068118 + MIR SINE MIR 31 135 -73 2244 155 39 0 chr11 89715462 89715848 -59067624 + MER57A LTR ERV1 2 402 -1 23 54 0 0 chr11 89716663 89716700 -59066772 + AT_rich Low_complexity Low_complexity 1 37 0 685 264 114 23 chr11 89716780 89717000 -59066472 - MIR SINE MIR -21 241 2 471 340 52 5 chr11 89717497 89717709 -59065763 + MIR SINE MIR 41 262 0 192 311 0 0 chr11 89717753 89717798 -59065674 + L2 LINE L2 2985 3029 -243 1949 141 0 23 chr11 89717913 89718217 -59065255 - AluSq SINE Alu -16 297 1 188 241 56 19 chr11 89719044 89719098 -59064374 - L3 LINE CR1 -80 1497 1442 453 319 97 38 chr11 89719480 89719718 -59063754 - MIR SINE MIR 0 262 11 204 40 0 0 chr11 89719915 89719940 -59063532 + (TG)n Simple_repeat Simple_repeat 2 26 0 2180 125 0 6 chr11 89721789 89722101 -59061371 + AluSg SINE Alu 1 310 0 24 53 0 0 chr11 89722120 89722158 -59061314 + AT_rich Low_complexity Low_complexity 1 38 0 1064 266 12 8 chr11 89722251 89722507 -59060965 + MIR SINE MIR 6 262 0 501 244 194 30 chr11 89722755 89722956 -59060516 + MIR SINE MIR 8 241 -21 335 288 7 0 chr11 89723049 89723188 -59060284 + (TA)n Simple_repeat Simple_repeat 1 140 0 454 77 0 26 chr11 89723195 89723273 -59060199 + (TG)n Simple_repeat Simple_repeat 2 77 0 313 294 44 66 chr11 89723598 89723734 -59059738 - L2 LINE L2 -2 3270 3138 555 310 49 10 chr11 89724999 89725222 -59058250 - MIR SINE MIR -21 241 10 1842 98 0 51 chr11 89725555 89725870 -59057602 + AluY SINE Alu 1 299 -12 485 320 95 5 chr11 89726287 89726509 -59056963 + MIR SINE MIR 21 262 0 2488 69 0 0 chr11 89726613 89726916 -59056556 - AluY SINE Alu -8 303 1 184 262 49 16 chr11 89727931 89727992 -59055480 - L2 LINE L2 -1 3271 3209 776 272 46 13 chr11 89729044 89729283 -59054189 - MIR SINE MIR 0 262 16 1510 209 14 74 chr11 89729647 89730092 -59053380 + MSTB1 LTR MaLR 2 419 -13 378 335 6 22 chr11 89731296 89731475 -59051997 + L2 LINE L2 1745 1920 -1394 331 283 75 17 chr11 89731703 89731823 -59051649 - MIR SINE MIR -123 139 13 240 35 0 0 chr11 89731995 89732024 -59051448 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 252 0 0 0 chr11 89732023 89732051 -59051421 + (TA)n Simple_repeat Simple_repeat 1 28 0 282 286 8 38 chr11 89732055 89732188 -59051284 - L1MC/D LINE L1 -2132 5676 5548 289 253 156 40 chr11 89732206 89732431 -59051041 + L2 LINE L2 1942 2192 -1122 393 359 58 32 chr11 89733476 89733788 -59049684 - L2 LINE L2 -779 2535 2216 570 313 95 5 chr11 89733823 89734034 -59049438 - MIR SINE MIR -16 246 17 2187 118 7 0 chr11 89734083 89734380 -59049092 - AluSx SINE Alu -13 299 1 260 283 102 32 chr11 89734477 89734664 -59048808 - L3 LINE CR1 -191 1386 1187 192 231 39 0 chr11 89735420 89735472 -59048000 + L2 LINE L2 3171 3224 -89 236 331 77 0 chr11 89735598 89735728 -59047744 + MIR SINE MIR 110 249 -13 426 294 40 16 chr11 89736731 89736857 -59046615 + MIR SINE MIR 16 144 -64 189 94 0 0 chr11 89736871 89736903 -59046569 + (T)n Simple_repeat Simple_repeat 1 32 0 289 337 68 43 chr11 89737828 89737991 -59045481 + MIR SINE MIR 52 218 -44 555 269 129 0 chr11 89738087 89738273 -59045199 - MIR SINE MIR -2 260 51 195 139 0 0 chr11 89738318 89738354 -59045118 + (TAA)n Simple_repeat Simple_repeat 1 36 0 1827 173 3 13 chr11 89738610 89738922 -59044550 - MER1B DNA MER1_type 0 339 31 478 255 20 88 chr11 89739003 89739207 -59044265 + MLT1J LTR MaLR 1 190 -321 376 327 31 19 chr11 89739264 89739423 -59044049 + MLT1J LTR MaLR 226 386 -125 1911 188 0 22 chr11 89739476 89739630 -59043842 + MLT1A1 LTR MaLR 13 169 -196 2433 179 17 0 chr11 89739630 89740049 -59043423 + MSTB LTR MaLR 1 426 0 1911 188 0 22 chr11 89740049 89740255 -59043217 + MLT1A1 LTR MaLR 169 365 0 1721 265 65 15 chr11 89740921 89741442 -59042030 - MER77 LTR ERV1 -6 599 53 225 0 0 0 chr11 89742342 89742367 -59041105 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2046 109 63 0 chr11 89743340 89743625 -59039847 - AluSp SINE Alu -10 303 1 2122 135 0 10 chr11 89743654 89743957 -59039515 + AluSx SINE Alu 3 302 -10 264 297 0 0 chr11 89744073 89744174 -59039298 + AluSp/q SINE Alu 203 303 0 189 0 0 0 chr11 89744596 89744617 -59038855 + (TA)n Simple_repeat Simple_repeat 2 22 0 277 265 111 17 chr11 89744962 89745079 -59038393 - MER94 DNA DNA 0 134 7 261 0 0 0 chr11 89745648 89745677 -59037795 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 590 256 241 0 chr11 89746592 89746795 -59036677 - MIR SINE MIR -4 258 7 344 357 56 75 chr11 89746827 89747200 -59036272 + L2 LINE L2 2901 3266 -6 892 221 27 93 chr11 89747480 89747911 -59035561 + MLT2D LTR ERVL 45 513 -7 320 275 0 0 chr11 89748010 89748101 -59035371 + (TA)n Simple_repeat Simple_repeat 2 92 0 279 280 77 95 chr11 89748125 89748293 -59035179 - MIR SINE MIR -96 166 2 2143 130 0 13 chr11 89748851 89749166 -59034306 - AluSx SINE Alu -1 311 1 200 329 13 13 chr11 89749346 89749425 -59034047 + MIR3 SINE MIR 11 89 -119 680 259 185 83 chr11 89750245 89750677 -59032795 - L2 LINE L2 -2 3311 2836 481 241 38 111 chr11 89750986 89751247 -59032225 + MLT1J2 LTR MaLR 23 264 -186 218 354 46 34 chr11 89751248 89751501 -59031971 - L2 LINE L2 -260 3012 2751 352 246 147 19 chr11 89752019 89752147 -59031325 - MIR SINE MIR -50 158 20 1814 180 0 26 chr11 89752464 89752770 -59030702 - AluJb SINE Alu -14 298 1 226 324 82 109 chr11 89753403 89753770 -59029702 - L2 LINE L2 -2 3270 2914 356 240 157 99 chr11 89754032 89754136 -59029336 + MLT1J LTR MaLR 218 315 -196 2092 171 80 5 chr11 89754136 89754534 -59028938 - MSTA LTR MaLR 0 428 1 356 240 157 99 chr11 89754534 89754671 -59028801 + MLT1J LTR MaLR 315 473 -38 248 244 37 85 chr11 89754715 89754797 -59028675 + MIR SINE MIR 7 84 -178 180 0 0 0 chr11 89754988 89755008 -59028464 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 256 189 19 0 chr11 89755752 89755805 -59027667 - L2 LINE L2 -4 3309 3256 229 286 36 60 chr11 89757771 89757855 -59025617 - MIR SINE MIR -125 137 56 187 308 82 51 chr11 89757986 89758181 -59025291 - L2 LINE L2 0 3313 3113 263 297 178 25 chr11 89758208 89758467 -59025005 - L2 LINE L2 -254 3018 2711 1175 227 34 52 chr11 89758970 89759261 -59024211 + AluJo SINE Alu 2 287 -15 372 374 84 5 chr11 89759802 89760016 -59023456 + MIR SINE MIR 14 244 -18 275 324 96 2 chr11 89760145 89760306 -59023166 + MIR SINE MIR 30 202 -60 801 260 114 5 chr11 89760992 89761211 -59022261 - MIR SINE MIR -1 261 19 282 284 37 12 chr11 89761999 89762080 -59021392 + MIR SINE MIR 31 113 -149 397 214 24 12 chr11 89762314 89762398 -59021074 - L2 LINE L2 0 3272 3188 233 313 214 0 chr11 89762648 89762779 -59020693 - MIR SINE MIR -30 232 74 2016 154 3 21 chr11 89763278 89763603 -59019869 - MSTB1 LTR MaLR -113 319 1 312 259 94 71 chr11 89763604 89763774 -59019698 + MIR SINE MIR 57 230 -32 209 338 100 27 chr11 89764221 89764362 -59019110 + MIR3 SINE MIR 7 155 -77 218 319 64 11 chr11 89764450 89764544 -59018928 - L2 LINE L2 -261 3011 2913 515 277 47 52 chr11 89765918 89766144 -59017328 + MIR SINE MIR 9 234 -28 441 319 37 4 chr11 89766398 89766559 -59016913 - MIR3 SINE MIR -31 177 30 324 336 103 0 chr11 89766588 89766704 -59016768 + L2 LINE L2 3145 3272 0 2200 47 69 4 chr11 89767080 89767354 -59016118 - AluY SINE Alu -19 292 1 198 0 0 0 chr11 89767998 89768020 -59015452 + (T)n Simple_repeat Simple_repeat 1 22 0 748 303 123 3 chr11 89768167 89768500 -59014972 + LTR33A LTR ERVL 142 514 -9 391 239 134 0 chr11 89768624 89768758 -59014714 + MIR SINE MIR 111 262 0 322 346 37 9 chr11 89769847 89769954 -59013518 - L2 LINE L2 -1 3271 3162 207 171 0 24 chr11 89770407 89770448 -59013024 + L2 LINE L2 3215 3254 -18 210 91 0 0 chr11 89771162 89771195 -59012277 + (CA)n Simple_repeat Simple_repeat 2 34 0 1905 141 48 95 chr11 89771326 89771787 -59011685 + L1MA7 LINE L1 5842 6280 -11 705 325 4 20 chr11 89771981 89772227 -59011245 - MIR SINE MIR -13 249 8 233 356 29 78 chr11 89772455 89772660 -59010812 + L2 LINE L2 2992 3186 -86 231 88 0 0 chr11 89774169 89774203 -59009269 + (TAA)n Simple_repeat Simple_repeat 2 35 0 526 283 185 5 chr11 89774206 89774411 -59009061 - MIR SINE MIR -10 252 11 344 384 61 17 chr11 89775008 89775308 -59008164 + L2 LINE L2 2770 3083 -189 310 321 115 11 chr11 89776509 89776698 -59006774 - MIR SINE MIR -44 218 12 691 269 73 29 chr11 89777591 89777836 -59005636 - MIR SINE MIR -1 261 6 378 245 68 27 chr11 89778170 89778317 -59005155 - MIR SINE MIR -18 244 92 255 314 14 0 chr11 89778380 89778450 -59005022 - L2 LINE L2 -823 2491 2421 479 222 24 16 chr11 89778926 89779052 -59004420 - MIR SINE MIR -11 251 125 439 311 55 18 chr11 89779683 89779847 -59003625 - MIR SINE MIR -41 221 52 240 307 0 45 chr11 89780760 89780848 -59002624 + L3 LINE CR1 1363 1446 -131 353 314 96 18 chr11 89781246 89781466 -59002006 + MIR SINE MIR 20 256 -6 26 30 0 0 chr11 89781560 89781593 -59001879 + AT_rich Low_complexity Low_complexity 1 33 0 206 348 78 26 chr11 89782001 89782116 -59001356 - MIR SINE MIR -114 148 28 228 326 53 11 chr11 89782631 89782726 -59000746 + MIR SINE MIR 47 145 -63 193 323 118 112 chr11 89782938 89783099 -59000373 - MIR3 SINE MIR -15 193 32 279 185 148 25 chr11 89783394 89783475 -58999997 + L2 LINE L2 3223 3313 0 591 328 62 52 chr11 89783979 89784287 -58999185 + L2 LINE L2 2962 3272 0 270 0 0 0 chr11 89785225 89785255 -58998217 + (TG)n Simple_repeat Simple_repeat 1 60 0 270 0 0 0 chr11 89785255 89785285 -58998187 + (TG)n Simple_repeat Simple_repeat 2 31 0 266 315 81 13 chr11 89785418 89785567 -58997905 - MIR SINE MIR -56 206 48 239 354 31 23 chr11 89785714 89785844 -58997628 + MIR SINE MIR 18 148 -114 366 333 8 0 chr11 89785863 89785983 -58997489 - L2 LINE L2 -1 3312 3192 308 283 22 0 chr11 89786213 89786305 -58997167 + L1MC4 LINE L1 6611 6704 -1338 21 0 0 0 chr11 89786305 89786326 -58997146 + AT_rich Low_complexity Low_complexity 1 21 0 207 211 39 19 chr11 89787425 89787477 -58995995 - L2 LINE L2 -216 3056 3004 261 139 0 0 chr11 89788065 89788108 -58995364 + (GGAA)n Simple_repeat Simple_repeat 4 46 0 214 311 41 57 chr11 89789427 89789549 -58993923 - L3 LINE CR1 -24 1553 1434 228 194 209 45 chr11 89789559 89789626 -58993846 + MIR SINE MIR 114 191 -71 422 335 104 0 chr11 89790779 89790943 -58992529 - MIR SINE MIR -6 256 76 222 37 0 0 chr11 89792164 89792191 -58991281 + (CA)n Simple_repeat Simple_repeat 2 28 0 318 26 0 0 chr11 89792364 89792403 -58991069 + (TA)n Simple_repeat Simple_repeat 1 39 0 273 105 0 0 chr11 89792614 89792652 -58990820 - MLT2B1 LTR ERVL 0 515 478 459 0 0 0 chr11 89792652 89792703 -58990769 + (GA)n Simple_repeat Simple_repeat 2 52 0 1511 248 55 45 chr11 89792757 89793197 -58990275 - MLT2B1 LTR ERVL -76 444 1 311 303 41 41 chr11 89793999 89794121 -58989351 - MIR SINE MIR -12 250 129 330 346 38 30 chr11 89794188 89794321 -58989151 + MIR SINE MIR 17 150 -58 656 310 35 40 chr11 89794510 89794736 -58988736 + MIR SINE MIR 11 235 -27 405 279 61 76 chr11 89794998 89795260 -58988212 + L1ME LINE L1 5534 5791 -330 975 115 0 0 chr11 89795848 89795996 -58987476 + (TC)n Simple_repeat Simple_repeat 2 149 0 221 303 13 0 chr11 89796017 89796093 -58987379 + CT-rich Low_complexity Low_complexity 5 81 0 4030 184 50 49 chr11 89796583 89796683 -58986789 - L1MA9 LINE L1 -35 6277 6179 201 74 0 0 chr11 89796683 89796710 -58986762 + (TG)n Simple_repeat Simple_repeat 2 28 0 4030 184 50 49 chr11 89796710 89797569 -58985903 - L1MA9 LINE L1 -133 6179 5317 22 0 0 0 chr11 89798058 89798080 -58985392 + AT_rich Low_complexity Low_complexity 1 22 0 190 381 16 0 chr11 89798394 89798457 -58985015 + L2 LINE L2 3227 3290 -23 189 309 176 0 chr11 89798965 89799033 -58984439 + L2 LINE L2 3233 3312 -1 211 236 47 132 chr11 89799320 89799426 -58984046 - MIR SINE MIR -49 213 117 415 189 22 11 chr11 89800517 89800607 -58982865 - MIR3 SINE MIR -9 199 109 204 40 0 0 chr11 89800846 89800871 -58982601 + (TC)n Simple_repeat Simple_repeat 1 25 0 234 23 45 23 chr11 89802165 89802209 -58981263 + (TAAAAA)n Simple_repeat Simple_repeat 3 47 0 189 0 0 0 chr11 89802341 89802362 -58981110 + (GAA)n Simple_repeat Simple_repeat 1 21 0 291 304 116 27 chr11 89803201 89803373 -58980099 + MIR SINE MIR 1 188 -69 227 318 114 8 chr11 89803422 89803554 -58979918 - MIR SINE MIR -43 219 74 202 333 78 31 chr11 89804031 89804160 -58979312 - MER5A DNA MER1_type -11 178 44 513 333 39 6 chr11 89805587 89805767 -58977705 + MIR3 SINE MIR 12 197 -11 684 271 122 0 chr11 89805923 89806104 -58977368 - MER63A DNA MER1_type -7 203 1 208 274 222 17 chr11 89806105 89806222 -58977250 - MIR SINE MIR -47 215 75 249 317 0 0 chr11 89806264 89806346 -58977126 - MLT1I LTR MaLR -58 351 270 225 377 0 0 chr11 89806625 89806694 -58976778 - MIR SINE MIR -188 74 6 328 322 81 13 chr11 89807172 89807321 -58976151 + MIR SINE MIR 91 249 -13 13967 84 13 1 chr11 89807620 89811083 -58972389 - L1PA7 LINE L1 0 6154 2651 461 288 63 63 chr11 89811684 89811889 -58971583 + MIR SINE MIR 48 252 -10 229 209 0 0 chr11 89811896 89811939 -58971533 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 510 384 46 13 chr11 89812780 89813082 -58970390 - L2 LINE L2 -27 3245 2934 4960 238 71 29 chr11 89813271 89814159 -58969313 - L1ME1 LINE L1 -5 6161 5312 18530 53 7 0 chr11 89814159 89817302 -58966170 - L1PA5 LINE L1 -11 6143 2985 4960 238 71 29 chr11 89817302 89818558 -58964914 - L1ME1 LINE L1 -854 5312 3901 216 0 0 0 chr11 89818558 89818582 -58964890 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4960 238 71 29 chr11 89818582 89818978 -58964494 - L1ME1 LINE L1 -2265 3901 3523 366 61 0 0 chr11 89818979 89819028 -58964444 + (GA)n Simple_repeat Simple_repeat 2 50 0 463 347 44 65 chr11 89819054 89819621 -58963851 - L2 LINE L2 -557 2757 2203 198 103 0 0 chr11 89819711 89819740 -58963732 + (T)n Simple_repeat Simple_repeat 1 29 0 639 243 62 26 chr11 89820062 89820717 -58962755 + L1ME1 LINE L1 5422 6160 -6 4008 232 8 8 chr11 89821611 89822453 -58961019 + L1M2c LINE L1 64 905 -5884 468 387 67 24 chr11 89822621 89823238 -58960234 + L2 LINE L2 2098 2740 -574 231 250 125 16 chr11 89824048 89824176 -58959296 + L1MC/D LINE L1 5331 5472 -2336 257 250 50 25 chr11 89824724 89824804 -58958668 + MIR SINE MIR 110 191 -71 1263 136 191 39 chr11 89825021 89825278 -58958194 - AluJb SINE Alu -2 300 5 2043 156 0 0 chr11 89825834 89826141 -58957331 - AluSx SINE Alu -5 307 1 238 367 0 0 chr11 89826196 89826275 -58957197 - L2 LINE L2 -61 3211 3133 1633 195 40 25 chr11 89827689 89828105 -58955367 + LTR1B LTR ERV1 1 614 -212 2087 167 41 31 chr11 89828342 89828871 -58954601 + MLT2A2 LTR ERVL 17 554 0 23 0 0 0 chr11 89829034 89829057 -58954415 + AT_rich Low_complexity Low_complexity 1 23 0 285 339 71 9 chr11 89829658 89829770 -58953702 - L2 LINE L2 0 3272 3154 188 254 73 0 chr11 89830070 89830125 -58953347 + L2 LINE L2 3169 3227 -45 593 238 7 27 chr11 89831394 89831541 -58951931 - MIR SINE MIR 0 262 119 200 333 0 0 chr11 89833488 89833548 -58949924 + L2 LINE L2 3209 3268 -4 502 317 42 46 chr11 89833928 89834168 -58949304 + MIR SINE MIR 21 259 -3 5888 148 23 5 chr11 89835892 89836926 -58946546 + L1PA15-16 LINE L1 1628 2680 -4169 1627 222 75 0 chr11 89836928 89837262 -58946210 + MSTA LTR MaLR 2 360 -68 2023 148 12 9 chr11 89837267 89837612 -58945860 - L1PA13 LINE L1 -4 6159 5814 193 309 119 0 chr11 89839225 89839309 -58944163 + L2 LINE L2 3137 3230 -42 226 324 108 7 chr11 89839555 89839694 -58943778 - L2 LINE L2 -863 2451 2299 256 273 13 0 chr11 89840434 89840511 -58942961 - MIR SINE MIR -6 256 179 292 360 65 7 chr11 89840704 89840857 -58942615 + MER5B DNA MER1_type 17 178 0 556 138 11 0 chr11 89841238 89841357 -58942115 - AluSx SINE Alu 0 312 193 1048 116 0 0 chr11 89841358 89841504 -58941968 - AluSx SINE Alu -166 146 1 381 339 31 79 chr11 89841869 89842161 -58941311 - L2 LINE L2 0 3272 2995 2585 181 32 18 chr11 89842542 89843038 -58940434 + MLT1D LTR MaLR 3 505 0 946 367 71 20 chr11 89843772 89844268 -58939204 - L2 LINE L2 -217 3055 2486 2007 147 7 0 chr11 89844268 89844574 -58938898 + AluSq SINE Alu 1 308 -5 946 367 71 20 chr11 89844574 89844911 -58938561 - L2 LINE L2 -786 2486 2167 2212 113 0 3 chr11 89845273 89845566 -58937906 - AluSq SINE Alu -21 292 1 229 324 0 0 chr11 89845630 89845698 -58937774 - MIR SINE MIR -119 143 76 8494 110 5 29 chr11 89845759 89847155 -58936317 - L1PA15-16 LINE L1 -2541 4308 2947 430 198 0 8 chr11 89847177 89847298 -58936174 - L1 LINE L1 -1732 4414 4295 * 1287 174 8 0 chr11 89847297 89847544 -58935928 - L1PA15-16 LINE L1 -3927 2922 2674 484 59 0 15 chr11 89847545 89847613 -58935859 - MSTB1 LTR MaLR -4 428 362 3707 103 30 0 chr11 89847613 89848220 -58935252 + L1PA13 LINE L1 5207 5829 -334 860 117 0 36 chr11 89848220 89848357 -58935115 + AluY SINE Alu 1 132 -179 10544 197 34 15 chr11 89848460 89852012 -58931460 + L1PA16 LINE L1 2541 6157 -9 1412 246 25 30 chr11 89852236 89852266 -58931206 - L1ME1 LINE L1 -38 6128 6099 1450 199 17 20 chr11 89852266 89852567 -58930905 - AluJo SINE Alu -12 300 1 1412 246 25 30 chr11 89852567 89852976 -58930496 - L1ME1 LINE L1 -67 6099 5691 1540 171 33 30 chr11 89853008 89853342 -58930130 - L1PB4 LINE L1 -1 6155 5821 2838 190 26 7 chr11 89853444 89854048 -58929424 - L1PB4 LINE L1 -1097 5049 4434 1626 213 76 85 chr11 89854048 89854564 -58928908 + MLT2B3 LTR ERVL 1 511 -43 180 0 0 0 chr11 89854581 89854601 -58928871 + (CA)n Simple_repeat Simple_repeat 1 20 0 276 132 0 0 chr11 89854615 89854662 -58928810 + MLT2C2 LTR ERVL 399 456 -8 1592 191 15 0 chr11 89854666 89854996 -58928476 - L1PB4 LINE L1 -1707 4439 4105 3467 200 29 25 chr11 89855001 89855857 -58927615 + L1PB4 LINE L1 3222 4081 -2065 922 215 11 29 chr11 89855871 89856114 -58927358 - L1M1 LINE L1 -539 5627 5384 219 36 0 0 chr11 89856448 89856476 -58926996 + (TG)n Simple_repeat Simple_repeat 2 29 0 25 0 0 0 chr11 89856586 89856611 -58926861 + AT_rich Low_complexity Low_complexity 1 25 0 1075 129 18 12 chr11 89856611 89856822 -58926650 + AluSq SINE Alu 121 332 0 2145 227 92 94 chr11 89856903 89857194 -58926278 - L1MC5 LINE L1 -47 7914 7624 1582 163 37 14 chr11 89857194 89857544 -58925928 + L1MA8 LINE L1 5934 6291 0 2145 227 92 94 chr11 89857544 89858545 -58924927 - L1MC5 LINE L1 -337 7624 6625 262 163 0 0 chr11 89859825 89859874 -58923598 + L2 LINE L2 2924 2972 -300 18340 171 50 8 chr11 89860320 89861181 -58922291 - L1M1 LINE L1 -647 7077 6254 1506 173 96 34 chr11 89861181 89861534 -58921938 - THE1C LTR MaLR 0 375 1 18340 171 50 8 chr11 89861534 89864409 -58919063 - L1M1 LINE L1 -1470 6254 3501 1352 123 40 20 chr11 89864409 89864550 -58918922 + L1MA2 LINE L1 6047 6197 -107 7407 170 63 105 chr11 89864550 89866382 -58917090 + MER52A LTR ERV1 1 1755 0 1352 123 40 20 chr11 89866382 89866493 -58916979 + L1MA2 LINE L1 6197 6304 0 18340 171 50 8 chr11 89866493 89867058 -58916414 - L1M1 LINE L1 -4223 3501 2961 2256 99 3 3 chr11 89867058 89867385 -58916087 - AluSp SINE Alu 0 313 1 18340 171 50 8 chr11 89867385 89869844 -58913628 - L1M1 LINE L1 -4763 2961 20 255 324 93 19 chr11 89870755 89870863 -58912609 - MIR SINE MIR -61 147 32 1960 72 43 7 chr11 89871528 89871804 -58911668 + AluY SINE Alu 1 286 -25 1941 132 3 7 chr11 89872614 89872918 -58910554 - AluSc SINE Alu -6 303 1 209 362 55 16 chr11 89872921 89873048 -58910424 + MIR SINE MIR 124 255 -7 278 296 23 45 chr11 89873674 89873762 -58909710 + L2 LINE L2 3203 3288 -25 7454 180 112 49 chr11 89874204 89875230 -58908242 + L1MD1 LINE L1 19 979 -5657 2198 147 22 71 chr11 89875230 89875680 -58907792 + MSTA LTR MaLR 1 428 0 7454 180 112 49 chr11 89875680 89876975 -58906497 + L1MD1 LINE L1 979 2191 -4445 2382 109 0 0 chr11 89876975 89877288 -58906184 + AluSq SINE Alu 1 313 0 7454 180 112 49 chr11 89877288 89880965 -58902507 + L1MD1 LINE L1 2191 6632 -4 381 326 30 0 chr11 89881524 89881656 -58901816 - L2 LINE L2 0 3272 3137 273 57 0 0 chr11 89882983 89883018 -58900454 + (CA)n Simple_repeat Simple_repeat 2 36 0 320 336 60 47 chr11 89883088 89883323 -58900149 - MIR SINE MIR -17 245 8 180 286 102 82 chr11 89884209 89884503 -58898969 + L2 LINE L2 2678 2977 -337 196 352 14 0 chr11 89885270 89885341 -58898131 + L2 LINE L2 3238 3309 -4 569 347 51 0 chr11 89886344 89886560 -58896912 - MIR SINE MIR 0 262 36 302 272 12 12 chr11 89886701 89886782 -58896690 + MIR SINE MIR 67 147 -115 223 173 96 19 chr11 89888069 89888121 -58895351 + L2 LINE L2 3205 3260 -12 27 0 0 0 chr11 89888259 89888286 -58895186 + AT_rich Low_complexity Low_complexity 1 27 0 25 51 0 0 chr11 89888300 89888339 -58895133 + AT_rich Low_complexity Low_complexity 1 39 0 539 206 138 38 chr11 89888357 89888517 -58894955 + MER69A DNA AcHobo 1 176 -1 227 356 52 15 chr11 89888557 89888692 -58894780 - MIR3 SINE MIR -66 142 3 291 71 0 0 chr11 89888876 89888918 -58894554 + (CA)n Simple_repeat Simple_repeat 1 42 0 1314 113 5 0 chr11 89889328 89889523 -58893949 - L1P LINE L1 -3825 2321 2126 6685 62 18 0 chr11 89889523 89890512 -58892960 + L1PA7 LINE L1 5148 6152 -2 26 30 0 0 chr11 89892317 89892350 -58891122 + AT_rich Low_complexity Low_complexity 1 33 0 284 250 34 23 chr11 89892688 89892776 -58890696 - L2 LINE L2 0 3313 3225 428 328 69 5 chr11 89893316 89893520 -58889952 - MER20 DNA MER1_type 0 219 3 3884 54 2 2 chr11 89894731 89895215 -58888257 + L1PA8 LINE L1 5614 6097 -75 423 383 53 18 chr11 89895901 89896358 -58887114 + L2 LINE L2 2543 3011 -261 266 88 0 0 chr11 89896574 89896608 -58886864 + U2 snRNA snRNA 1 34 -154 1151 251 67 0 chr11 89896939 89897254 -58886218 - MER58B DNA MER1_type -1 340 5 195 125 0 0 chr11 89897271 89897311 -58886161 + (A)n Simple_repeat Simple_repeat 1 40 0 320 261 65 29 chr11 89898617 89898755 -58884717 + MIR SINE MIR 120 262 0 678 307 62 9 chr11 89898984 89899209 -58884263 + L2 LINE L2 2834 3070 -243 414 0 0 0 chr11 89899225 89899271 -58884201 + (CA)n Simple_repeat Simple_repeat 1 46 0 261 0 0 0 chr11 89899400 89899429 -58884043 + (TG)n Simple_repeat Simple_repeat 2 30 0 249 313 12 24 chr11 89899763 89899846 -58883626 - L2 LINE L2 -1 3271 3190 210 25 50 25 chr11 89899848 89899888 -58883584 + (TAA)n Simple_repeat Simple_repeat 1 41 0 252 0 0 0 chr11 89900779 89900807 -58882665 + (CA)n Simple_repeat Simple_repeat 1 28 0 279 306 60 54 chr11 89900904 89901032 -58882440 + MIR SINE MIR 16 142 -66 465 279 0 23 chr11 89901549 89901704 -58881768 + MIR3 SINE MIR 51 203 -5 191 374 95 32 chr11 89901706 89901896 -58881576 + L2 LINE L2 2889 3090 -182 1064 98 0 0 chr11 89902356 89902489 -58880983 + AluSq/x SINE Alu 1 133 -180 198 0 0 0 chr11 89902489 89902511 -58880961 + (A)n Simple_repeat Simple_repeat 1 22 0 268 226 19 0 chr11 89902657 89902710 -58880762 + L2 LINE L2 3259 3312 -1 260 288 0 0 chr11 89902792 89902858 -58880614 - L2 LINE L2 -1 3312 3247 227 333 67 0 chr11 89903475 89903565 -58879907 - MIR SINE MIR -78 184 89 1732 125 0 0 chr11 89904928 89905207 -58878265 - L1MA2 LINE L1 0 6304 6026 198 360 104 8 chr11 89905584 89905709 -58877763 + L2 LINE L2 2567 2703 -611 242 274 0 123 chr11 89905981 89906087 -58877385 - MIR SINE MIR -63 145 52 189 0 0 0 chr11 89906548 89906569 -58876903 + (A)n Simple_repeat Simple_repeat 1 21 0 3351 134 24 10 chr11 89906775 89907371 -58876101 + L1M2c LINE L1 1731 2334 -4455 2532 161 4 7 chr11 89907400 89907853 -58875619 - L1MC1 LINE L1 0 6333 5882 261 125 0 0 chr11 89907854 89907894 -58875578 - L1MC1 LINE L1 -431 5735 5696 649 199 6 43 chr11 89907982 89908143 -58875329 - L1MD2 LINE L1 -10 6349 6195 247 350 98 0 chr11 89908371 89908494 -58874978 - L2 LINE L2 0 3313 3179 1972 106 71 3 chr11 89908666 89908948 -58874524 - AluSg SINE Alu -9 301 1 180 0 0 0 chr11 89909087 89909107 -58874365 + (CAA)n Simple_repeat Simple_repeat 2 21 0 195 42 0 0 chr11 89909823 89909847 -58873625 + (A)n Simple_repeat Simple_repeat 1 24 0 2479 158 36 0 chr11 89910100 89910511 -58872961 + MSTA LTR MaLR 1 426 -2 293 320 156 0 chr11 89910924 89911052 -58872420 - L2 LINE L2 -10 3262 3115 246 62 0 0 chr11 89911169 89911201 -58872271 + (GAAAA)n Simple_repeat Simple_repeat 1 32 0 294 246 58 0 chr11 89911434 89911503 -58871969 + MIR SINE MIR 80 152 -110 361 249 124 92 chr11 89911863 89912112 -58871360 - MLT1L LTR MaLR -344 271 15 364 309 115 23 chr11 89912348 89912565 -58870907 + MIR SINE MIR 20 256 -6 21 36 0 0 chr11 89912627 89912655 -58870817 + AT_rich Low_complexity Low_complexity 1 28 0 202 222 0 0 chr11 89913411 89913456 -58870016 - L2 LINE L2 0 3272 3228 630 221 8 0 chr11 89913803 89913930 -58869542 + FLAM_C SINE Alu 1 128 -5 189 74 0 0 chr11 89913935 89913962 -58869510 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 2008 165 18 3 chr11 89914280 89914620 -58868852 + MER7A DNA MER2_type 4 346 0 22 0 0 0 chr11 89914635 89914657 -58868815 + AT_rich Low_complexity Low_complexity 1 22 0 462 240 10 19 chr11 89914804 89914908 -58868564 + L2 LINE L2 3198 3300 -13 1021 117 0 0 chr11 89915067 89915221 -58868251 - L1PA11 LINE L1 0 6174 6021 22 0 0 0 chr11 89915235 89915257 -58868215 + AT_rich Low_complexity Low_complexity 1 22 0 35 24 0 0 chr11 89915424 89915466 -58868006 + AT_rich Low_complexity Low_complexity 1 42 0 452 240 114 34 chr11 89916138 89916313 -58867159 - MIR SINE MIR -7 255 67 205 346 77 29 chr11 89917027 89917131 -58866341 + MIR SINE MIR 21 129 -133 * 661 255 43 71 chr11 89917130 89917385 -58866087 - L2 LINE L2 -1 3312 3065 357 0 0 0 chr11 89917483 89917530 -58865942 - L1PA2 LINE L1 0 6155 6109 225 0 0 0 chr11 89918100 89918125 -58865347 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr11 89918217 89918240 -58865232 + AT_rich Low_complexity Low_complexity 1 23 0 1904 219 128 0 chr11 89918506 89918913 -58864559 + MER44D DNA MER2_type 1 459 -246 847 186 0 19 chr11 89919117 89919273 -58864199 - FRAM SINE Alu -23 153 1 464 332 159 5 chr11 89919289 89919497 -58863975 + MIR SINE MIR 12 251 -11 440 376 109 9 chr11 89919714 89919924 -58863548 - L2 LINE L2 -10 3262 3032 400 246 65 22 chr11 89921446 89921584 -58861888 - MIR SINE MIR -102 160 17 2684 190 32 20 chr11 89921894 89922395 -58861077 + MLT2B2 LTR ERVL 1 507 -8 260 325 68 8 chr11 89922695 89922812 -58860660 + MER117 DNA MER1_type 74 197 0 28 0 0 0 chr11 89923404 89923432 -58860040 + AT_rich Low_complexity Low_complexity 1 28 0 472 268 36 7 chr11 89923740 89923878 -58859594 - MER46C DNA MER2_type -135 203 62 328 213 12 0 chr11 89923896 89923976 -58859496 + L1MC4 LINE L1 7938 8018 -24 230 208 0 0 chr11 89923981 89924029 -58859443 - MER46C DNA MER2_type -287 51 4 268 262 87 63 chr11 89925522 89925648 -58857824 - L2 LINE L2 -1 3271 3143 364 252 145 30 chr11 89926129 89926260 -58857212 + L2 LINE L2 3168 3313 0 22 56 0 0 chr11 89926272 89926308 -58857164 + AT_rich Low_complexity Low_complexity 1 36 0 27 0 0 0 chr11 89926353 89926380 -58857092 + AT_rich Low_complexity Low_complexity 1 27 0 1155 326 103 46 chr11 89926872 89927520 -58855952 + MER115 DNA AcHobo 8 692 -1 212 379 0 0 chr11 89928754 89928812 -58854660 + MIR SINE MIR 49 106 -102 29 28 0 0 chr11 89928950 89928986 -58854486 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr11 89929139 89929160 -58854312 + AT_rich Low_complexity Low_complexity 1 21 0 1523 177 51 39 chr11 89930394 89930728 -58852744 + MER44D DNA MER2_type 2 609 0 451 234 244 0 chr11 89930937 89931142 -58852330 - L1ME3A LINE L1 -220 5950 5696 182 360 94 31 chr11 89932129 89932415 -58851057 + L2 LINE L2 1720 2023 -1291 * 289 364 44 91 chr11 89932406 89932815 -58850657 + L2 LINE L2 2883 3272 0 240 350 111 0 chr11 89934101 89934218 -58849254 - L2 LINE L2 0 3272 3143 216 268 62 41 chr11 89935421 89935518 -58847954 - MIR SINE MIR -44 218 120 401 374 32 16 chr11 89936139 89936326 -58847146 - L2 LINE L2 -273 3040 2851 1548 316 102 29 chr11 89936373 89937266 -58846206 - L2 LINE L2 -611 2703 1746 21 36 0 0 chr11 89937632 89937660 -58845812 + AT_rich Low_complexity Low_complexity 1 28 0 1856 206 10 3 chr11 89937703 89938087 -58845385 + L1MC1 LINE L1 5937 6323 -10 2382 73 0 0 chr11 89938544 89938845 -58844627 - AluY SINE Alu -10 301 1 289 194 0 81 chr11 89939449 89939511 -58843961 + AluS SINE Alu 1 57 -251 382 284 133 13 chr11 89939570 89939739 -58843733 + MIR SINE MIR 15 206 -56 1221 79 0 34 chr11 89939822 89939999 -58843473 - MER30 DNA MER1_type -59 171 1 1152 197 72 33 chr11 89940285 89940590 -58842882 + MER5C DNA MER1_type 8 324 0 243 103 0 0 chr11 89940725 89940764 -58842708 + (ATG)n Simple_repeat Simple_repeat 2 40 0 225 179 282 13 chr11 89940770 89940848 -58842624 - MIR SINE MIR -55 207 109 453 327 37 12 chr11 89941087 89941249 -58842223 - L3 LINE CR1 -2 1575 1410 180 0 0 0 chr11 89941380 89941400 -58842072 + (A)n Simple_repeat Simple_repeat 1 20 0 1120 99 28 33 chr11 89941459 89941640 -58841832 + L1MA1 LINE L1 5802 5981 -321 663 308 69 19 chr11 89942835 89943095 -58840377 + MLT1I LTR MaLR 1 273 -136 440 291 124 30 chr11 89943230 89943464 -58840008 + MIR SINE MIR 2 257 -5 198 244 0 0 chr11 89943854 89943895 -58839577 - MIR SINE MIR -58 150 110 277 263 75 0 chr11 89945704 89945784 -58837688 + MER117 DNA MER1_type 111 196 -1 286 261 138 29 chr11 89948637 89948775 -58834697 + MER103 DNA DNA 11 163 -3 417 336 22 45 chr11 89949005 89949228 -58834244 + MIR SINE MIR 32 249 -13 23 0 0 0 chr11 89949463 89949486 -58833986 + AT_rich Low_complexity Low_complexity 1 23 0 236 336 36 58 chr11 89949697 89949834 -58833638 + MIR3 SINE MIR 13 146 -62 263 337 89 33 chr11 89950051 89950239 -58833233 - MIR SINE MIR -63 145 2 2003 29 0 0 chr11 89950566 89950806 -58832666 - L1PA4 LINE L1 -5 6150 5911 659 216 68 17 chr11 89951542 89951718 -58831754 + MER5A DNA MER1_type 5 189 0 404 297 122 22 chr11 89952135 89952374 -58831098 + L1ME LINE L1 5473 5749 -413 11937 65 2 3 chr11 89952374 89954705 -58828767 + L1PA6 LINE L1 3820 6154 0 404 297 122 22 chr11 89954705 89954784 -58828688 + L1ME LINE L1 5749 5819 -343 338 235 10 61 chr11 89955225 89955323 -58828149 + L2 LINE L2 3221 3313 0 482 321 100 0 chr11 89955840 89956030 -58827442 - MIR SINE MIR 0 262 54 221 274 0 0 chr11 89956443 89956494 -58826978 + (TATG)n Simple_repeat Simple_repeat 2 52 0 1427 174 74 0 chr11 89956652 89956951 -58826521 + L1MA10 LINE L1 6014 6334 0 223 320 170 10 chr11 89956956 89957056 -58826416 + MIR SINE MIR 21 136 -126 218 209 132 44 chr11 89958139 89958230 -58825242 + MIR SINE MIR 105 203 -59 * 528 254 7 36 chr11 89958222 89958360 -58825112 - L2 LINE L2 -28 3285 3152 1500 295 89 40 chr11 89958464 89958582 -58824890 + L2 LINE L2 1917 2028 -1286 1906 143 31 0 chr11 89958582 89958869 -58824603 - AluSg SINE Alu -14 296 1 1500 295 89 40 chr11 89958869 89959510 -58823962 + L2 LINE L2 2028 2714 -600 397 281 108 55 chr11 89959515 89959730 -58823742 + MLT1H LTR MaLR 1 230 -325 353 213 120 67 chr11 89959855 89960005 -58823467 + MLT1H LTR MaLR 342 499 -43 265 302 0 23 chr11 89960247 89960333 -58823139 + MLT1H-int LTR MaLR 399 482 -889 2233 118 0 0 chr11 89961112 89961418 -58822054 + AluSx SINE Alu 1 306 -6 319 239 182 100 chr11 89961435 89961709 -58821763 + MLT1H-int LTR MaLR 1071 1731 -4 513 275 62 44 chr11 89961714 89962217 -58821255 + MLT1H LTR MaLR 1 590 0 571 338 67 54 chr11 89962221 89962814 -58820658 + L2 LINE L2 2711 3311 -2 24 0 0 0 chr11 89962837 89962861 -58820611 + AT_rich Low_complexity Low_complexity 1 24 0 406 279 117 35 chr11 89963057 89963325 -58820147 + MLT1J2 LTR MaLR 85 385 -65 2521 229 32 5 chr11 89963330 89963955 -58819517 + L1M4 LINE L1 4017 4658 -1488 1046 276 58 0 chr11 89963962 89964270 -58819202 - L1ME3A LINE L1 -67 6103 5778 792 269 84 0 chr11 89964557 89964914 -58818558 - MER113 DNA MER1_type? -130 391 5 378 296 145 0 chr11 89965276 89965448 -58818024 + MER117 DNA MER1_type 1 197 0 300 331 148 0 chr11 89965897 89966066 -58817406 - MIR SINE MIR -13 249 56 300 299 0 0 chr11 89966450 89966517 -58816955 - L2 LINE L2 -2 3270 3204 431 215 15 89 chr11 89967190 89967325 -58816147 + MIR SINE MIR 84 208 -54 235 240 78 116 chr11 89967793 89967922 -58815550 + L2 LINE L2 3143 3266 -6 740 272 95 71 chr11 89968804 89969142 -58814330 - L3 LINE CR1 -1 1576 1231 349 352 171 17 chr11 89969396 89969740 -58813732 + L2 LINE L2 2482 2878 -436 226 331 131 52 chr11 89969777 89970158 -58813314 - L2 LINE L2 -1215 2099 1689 1796 183 0 7 chr11 89970792 89971093 -58812379 - AluJb SINE Alu -13 299 1 418 282 37 133 chr11 89971821 89972062 -58811410 + MIR SINE MIR 35 252 -10 382 187 9 9 chr11 89972140 89972247 -58811225 + (TA)n Simple_repeat Simple_repeat 1 107 0 226 267 23 0 chr11 89972257 89972343 -58811129 - L1MC4 LINE L1 -1341 6701 6614 * 239 253 0 22 chr11 89972266 89972357 -58811115 + L1MC4 LINE L1 6615 6703 -1339 469 382 85 4 chr11 89972792 89973038 -58810434 + L2 LINE L2 3007 3272 0 263 333 0 14 chr11 89973845 89973914 -58809558 - L2 LINE L2 0 3272 3205 197 283 61 71 chr11 89974228 89974327 -58809145 + MIR SINE MIR 38 135 -127 375 91 18 0 chr11 89974390 89974445 -58809027 - L1P LINE L1 -1076 5070 5015 * 651 122 8 0 chr11 89974432 89974553 -58808919 + L1P LINE L1 5086 5207 -939 21 36 0 0 chr11 89975213 89975241 -58808231 + AT_rich Low_complexity Low_complexity 1 28 0 259 304 104 26 chr11 89975514 89975629 -58807843 + MIR SINE MIR 20 143 -119 223 366 38 38 chr11 89976481 89976667 -58806805 - L2 LINE L2 -189 3083 2898 328 308 11 0 chr11 89976919 89977010 -58806462 - MER117 DNA MER1_type -38 159 68 198 91 0 0 chr11 89978016 89978049 -58805423 + (CAA)n Simple_repeat Simple_repeat 2 34 0 240 111 0 0 chr11 89978327 89978363 -58805109 + (A)n Simple_repeat Simple_repeat 1 36 0 215 315 0 0 chr11 89978555 89978609 -58804863 + L2 LINE L2 3218 3271 -1 280 302 22 62 chr11 89978865 89979044 -58804428 + L2 LINE L2 3141 3312 -1 1539 120 12 4 chr11 89979641 89979891 -58803581 - L1MA2 LINE L1 0 6304 6053 4553 52 6 46 chr11 89980001 89980490 -58802982 - L1PA7 LINE L1 -292 5862 5407 2877 18 0 0 chr11 89980490 89980822 -58802650 - L1PA3 LINE L1 0 6155 5824 4553 52 6 46 chr11 89980822 89981034 -58802438 - L1PA7 LINE L1 -747 5407 5188 270 0 0 0 chr11 90031119 90031149 -58752323 + (T)n Simple_repeat Simple_repeat 1 30 0 6956 182 118 21 chr11 90031327 90032927 -58750545 - MER52A LTR ERV1 0 1755 1 963 156 12 0 chr11 90033565 90033725 -58749747 + MER57A LTR ERV1 1 162 -241 760 169 59 0 chr11 90033750 90033819 -58749653 - AluSx SINE Alu -108 204 140 186 43 0 0 chr11 90033819 90033842 -58749630 + (TG)n Simple_repeat Simple_repeat 2 24 0 760 169 59 0 chr11 90033842 90033908 -58749564 - AluSx SINE Alu -172 140 61 1115 165 48 0 chr11 90033908 90034114 -58749358 + MER57A LTR ERV1 184 399 -4 399 269 73 51 chr11 90034652 90034886 -58748586 - L1M4 LINE L1 -2944 3202 2964 421 103 0 0 chr11 90034911 90034969 -58748503 - L1PA16 LINE L1 -16 6150 6093 1417 196 3 63 chr11 90035735 90036052 -58747420 - AluSx SINE Alu -14 298 1 180 0 0 0 chr11 90037335 90037355 -58746117 + (A)n Simple_repeat Simple_repeat 1 20 0 189 246 31 62 chr11 90037585 90037650 -58745822 + MIR SINE MIR 64 126 -82 1509 177 51 39 chr11 90039088 90039422 -58744050 + MER44D DNA MER2_type 2 609 0 439 228 243 5 chr11 90039632 90039838 -58743634 - L1ME3A LINE L1 -220 5950 5696 289 364 44 91 chr11 90041103 90041512 -58741960 + L2 LINE L2 2883 3272 0 240 350 111 0 chr11 90042798 90042915 -58740557 - L2 LINE L2 0 3272 3143 216 268 62 41 chr11 90044118 90044215 -58739257 - MIR SINE MIR -44 218 120 458 387 67 24 chr11 90044981 90045598 -58737874 + L2 LINE L2 2098 2740 -574 267 31 0 0 chr11 90045944 90045976 -58737496 + (A)n Simple_repeat Simple_repeat 1 32 0 1132 264 126 16 chr11 90046115 90046816 -58736656 + L2 LINE L2 2531 3312 -1 438 323 45 18 chr11 90047041 90047264 -58736208 + MIR SINE MIR 34 262 0 193 333 48 48 chr11 90047769 90047937 -58735535 - L2 LINE L2 -74 3239 3072 431 319 17 0 chr11 90048480 90048596 -58734876 - L2 LINE L2 0 3313 3196 243 289 70 31 chr11 90048781 90048909 -58734563 - MIR SINE MIR -13 249 117 195 316 43 51 chr11 90049124 90049241 -58734231 + MIR SINE MIR 63 178 -84 254 344 88 31 chr11 90049839 90050031 -58733441 + L2 LINE L2 2869 3071 -201 208 167 64 39 chr11 90050393 90050471 -58733001 + A-rich Low_complexity Low_complexity 1 80 0 21 0 0 0 chr11 90054498 90054519 -58728953 + AT_rich Low_complexity Low_complexity 1 21 0 190 135 27 27 chr11 90054848 90054885 -58728587 - MIR SINE MIR -110 152 116 210 250 190 26 chr11 90055034 90055150 -58728322 + MIR SINE MIR 57 191 -71 272 286 176 3 chr11 90055161 90055524 -58727948 + L1ME4a LINE L1 4978 5403 -743 318 293 0 32 chr11 90055584 90055707 -58727765 + L1ME4a LINE L1 5539 5657 -2151 21 36 0 0 chr11 90055826 90055854 -58727618 + AT_rich Low_complexity Low_complexity 1 28 0 228 274 32 0 chr11 90056553 90056615 -58726857 + MIR3 SINE MIR 93 156 -52 372 284 78 34 chr11 90057327 90057531 -58725941 + L2 LINE L2 1218 1430 -1884 4794 116 15 11 chr11 90058069 90059307 -58724165 - L1PA13 LINE L1 -2 6161 4874 5436 79 12 8 chr11 90059309 90060066 -58723406 - L1PA8 LINE L1 -16 6156 5357 3349 181 27 0 chr11 90060060 90060718 -58722754 - L1PA13 LINE L1 -1267 4879 4204 * 216 86 0 0 chr11 90060825 90060860 -58722612 + (T)n Simple_repeat Simple_repeat 1 35 0 318 180 0 0 chr11 90060860 90060921 -58722551 - L1PA13 LINE L1 -2629 3517 3457 749 156 0 0 chr11 90060921 90061043 -58722429 + L1PA13 LINE L1 3334 3455 -2691 1094 350 89 44 chr11 90061052 90061879 -58721593 + L2 LINE L2 2082 2983 -330 1000 237 14 18 chr11 90061879 90062098 -58721374 + MER20 DNA MER1_type 1 218 -1 1094 350 89 44 chr11 90062098 90062444 -58721028 + L2 LINE L2 2983 3312 -1 215 295 101 24 chr11 90062480 90062629 -58720843 + MIR SINE MIR 43 212 -50 336 261 121 10 chr11 90062862 90063061 -58720411 + L1ME4a LINE L1 5899 6119 -2 1962 131 7 0 chr11 90063191 90063481 -58719991 + AluSq SINE Alu 1 292 -21 510 248 128 0 chr11 90063551 90063700 -58719772 - MIR SINE MIR -12 250 83 203 314 31 70 chr11 90063805 90064034 -58719438 - L2 LINE L2 -181 3091 2872 251 330 34 0 chr11 90064392 90064480 -58718992 - MIR SINE MIR -86 176 86 21 57 0 0 chr11 90064708 90064743 -58718729 + AT_rich Low_complexity Low_complexity 1 35 0 6186 147 7 29 chr11 90065582 90066485 -58716987 - L1MA3 LINE L1 0 7724 6803 2079 115 11 7 chr11 90066485 90066772 -58716700 - AluSx SINE Alu -24 288 1 6186 147 7 29 chr11 90066772 90067766 -58715706 - L1MA3 LINE L1 -921 6803 5866 * 13484 186 62 31 chr11 90067742 90069493 -58713979 - L1MA3 LINE L1 -2182 5383 3686 429 20 0 0 chr11 90069493 90069543 -58713929 + (TG)n Simple_repeat Simple_repeat 2 51 0 13484 186 62 31 chr11 90069543 90070940 -58712532 - L1MA3 LINE L1 -3879 3686 2333 2182 102 3 7 chr11 90070940 90071235 -58712237 - AluSc SINE Alu -12 297 4 13484 186 62 31 chr11 90071235 90073660 -58709812 - L1MA3 LINE L1 -5232 2333 12 1679 213 16 25 chr11 90073680 90074046 -58709426 + MER89 LTR ERV1 197 559 0 410 276 32 8 chr11 90074078 90074201 -58709271 - MER94 DNA DNA 0 134 9 434 342 36 16 chr11 90075107 90075300 -58708172 + MIR SINE MIR 66 262 0 8384 35 34 25 chr11 90075364 90076423 -58707049 - MER11C LTR ERVK -2 1069 1 365 241 26 69 chr11 90076876 90076992 -58706480 - L2 LINE L2 0 3272 3162 225 154 0 0 chr11 90077046 90077085 -58706387 + (CA)n Simple_repeat Simple_repeat 1 39 0 191 294 156 28 chr11 90077523 90077632 -58705840 - MIR SINE MIR -12 250 128 263 161 18 0 chr11 90077918 90077974 -58705498 + (TA)n Simple_repeat Simple_repeat 2 58 0 231 250 125 16 chr11 90078389 90078517 -58704955 + L1MC/D LINE L1 5331 5472 -2336 276 226 158 82 chr11 90079022 90079168 -58704304 + MIR SINE MIR 50 206 -56 1263 136 191 39 chr11 90079363 90079620 -58703852 - AluJb SINE Alu -2 300 5 361 257 63 53 chr11 90079934 90080141 -58703331 - L1ME3 LINE L1 -1 6169 5961 539 205 13 32 chr11 90080193 90080349 -58703123 - L1MC5 LINE L1 -437 7524 7372 21 0 0 0 chr11 90080541 90080562 -58702910 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr11 90080853 90080886 -58702586 + (CA)n Simple_repeat Simple_repeat 2 34 0 226 320 21 41 chr11 90081066 90081163 -58702309 - L2 LINE L2 -61 3252 3158 257 247 225 22 chr11 90082325 90082414 -58701058 + MIR3 SINE MIR 93 199 -9 1421 166 34 43 chr11 90082587 90082912 -58700560 - MER33 DNA MER1_type 0 324 3 429 248 19 0 chr11 90083358 90083463 -58700009 - MIR SINE MIR -109 153 47 333 333 86 15 chr11 90083828 90084026 -58699446 + MIR SINE MIR 32 243 -19 27 49 0 0 chr11 90084925 90084966 -58698506 + AT_rich Low_complexity Low_complexity 1 41 0 235 349 0 23 chr11 90084994 90085080 -58698392 + L2 LINE L2 3188 3271 -1 951 91 30 0 chr11 90085100 90085232 -58698240 + BC200 scRNA scRNA 1 136 -64 333 0 0 0 chr11 90085232 90085269 -58698203 + (CAA)n Simple_repeat Simple_repeat 2 38 0 30 0 0 0 chr11 90085539 90085569 -58697903 + AT_rich Low_complexity Low_complexity 1 30 0 33 0 0 0 chr11 90085876 90085909 -58697563 + AT_rich Low_complexity Low_complexity 1 33 0 2118 73 0 24 chr11 90086613 90086926 -58696546 - AluY SINE Alu 0 306 1 249 365 92 40 chr11 90087236 90087636 -58695836 - L2 LINE L2 -472 2842 2422 240 119 17 17 chr11 90088192 90088251 -58695221 + L1ME4a LINE L1 6052 6110 -11 530 279 111 10 chr11 90089185 90089393 -58694079 + MIR SINE MIR 34 262 0 330 241 121 95 chr11 90090278 90090394 -58693078 - L2 LINE L2 0 3272 3154 2745 13 0 13 chr11 90090535 90090850 -58692622 + AluYa5 SINE Alu 1 311 0 966 176 28 87 chr11 90090953 90091242 -58692230 + L1MD1 LINE L1 4665 4936 -1210 2826 209 53 30 chr11 90091243 90091558 -58691914 + L1MD1 LINE L1 5069 5375 -867 1469 224 36 28 chr11 90091558 90091920 -58691552 + MLT1A1 LTR MaLR 1 365 0 2826 209 53 30 chr11 90091920 90092529 -58690943 + L1MD1 LINE L1 5375 6018 -224 1793 176 3 0 chr11 90092535 90092841 -58690631 + AluJo SINE Alu 5 311 -1 645 262 46 63 chr11 90092983 90093220 -58690252 + MER115 DNA AcHobo 460 692 -1 210 379 0 0 chr11 90094454 90094512 -58688960 + MIR SINE MIR 49 106 -102 29 28 0 0 chr11 90094650 90094686 -58688786 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr11 90094839 90094860 -58688612 + AT_rich Low_complexity Low_complexity 1 21 0 506 170 32 0 chr11 90095045 90095139 -58688333 + MER5B DNA MER1_type 82 178 0 1053 169 51 37 chr11 90095147 90095420 -58688052 - MER58B DNA MER1_type 0 341 65 875 219 33 0 chr11 90095453 90095636 -58687836 + MER5A DNA MER1_type 1 189 0 288 161 53 95 chr11 90095926 90096052 -58687420 + MIR SINE MIR 39 159 -49 189 246 31 62 chr11 90096927 90096992 -58686480 + MIR SINE MIR 64 126 -82 2279 77 10 10 chr11 90097367 90097665 -58685807 - AluY SINE Alu -13 298 1 1542 164 109 32 chr11 90098600 90098948 -58684524 - THE1C LTR MaLR 0 375 1 382 292 92 8 chr11 90099300 90099420 -58684052 + MIR SINE MIR 46 175 -87 * 710 261 140 45 chr11 90099419 90099733 -58683739 + L2 LINE L2 2950 3293 -20 23 0 0 0 chr11 90099784 90099807 -58683665 + AT_rich Low_complexity Low_complexity 1 23 0 182 91 30 0 chr11 90099926 90099959 -58683513 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 296 315 65 0 chr11 90100213 90100305 -58683167 + L2 LINE L2 3195 3292 -21 440 256 101 42 chr11 90100545 90100713 -58682759 + MIR SINE MIR 14 191 -71 221 256 151 12 chr11 90101703 90101789 -58681683 - MIR SINE MIR -59 203 106 629 277 105 13 chr11 90102692 90102930 -58680542 + MIR SINE MIR 2 261 -1 340 316 53 9 chr11 90103054 90103168 -58680304 + L2 LINE L2 3154 3272 0 197 213 21 0 chr11 90104049 90104096 -58679376 + L2 LINE L2 1626 1673 -1641 321 279 27 45 chr11 90104151 90104262 -58679210 - MIR SINE MIR -93 169 61 247 313 70 9 chr11 90104670 90104785 -58678687 + MIR SINE MIR 67 188 -74 761 347 54 54 chr11 90104790 90105178 -58678294 - L2 LINE L2 -565 2749 2359 1162 147 25 15 chr11 90105178 90105382 -58678090 + L1PB3 LINE L1 5949 6154 0 761 347 54 54 chr11 90105382 90105624 -58677848 - L2 LINE L2 -954 2360 2119 450 301 158 11 chr11 90105648 90105831 -58677641 - MIR SINE MIR -8 254 45 197 303 92 0 chr11 90105864 90105940 -58677532 + MIR SINE MIR 180 262 0 292 313 77 18 chr11 90106292 90106564 -58676908 - L1ME4a LINE L1 -218 5903 5616 26 50 0 0 chr11 90106661 90106701 -58676771 + AT_rich Low_complexity Low_complexity 1 40 0 236 357 55 55 chr11 90107297 90107608 -58675864 + L2 LINE L2 2864 3174 -98 231 171 0 0 chr11 90109855 90109896 -58673576 + MIR SINE MIR 111 151 -111 345 217 0 0 chr11 90110161 90110230 -58673242 - MER103 DNA DNA -49 117 49 253 272 43 11 chr11 90110298 90110390 -58673082 + L1ME4a LINE L1 5961 6055 -66 301 256 0 58 chr11 90110824 90110910 -58672562 + MIR SINE MIR 69 149 -113 32 67 0 0 chr11 90110976 90111036 -58672436 + AT_rich Low_complexity Low_complexity 1 60 0 183 222 48 127 chr11 90111916 90112042 -58671430 + MIR SINE MIR 91 206 -56 325 373 34 0 chr11 90112606 90112724 -58670748 + L2 LINE L2 3139 3260 -12 579 126 155 0 chr11 90112741 90112844 -58670628 - MER20 DNA MER1_type -5 214 96 324 0 0 0 chr11 90113408 90113444 -58670028 + (CA)n Simple_repeat Simple_repeat 1 36 0 505 234 89 8 chr11 90114759 90114883 -58668589 - L2 LINE L2 0 3313 3180 409 279 56 56 chr11 90115005 90115184 -58668288 + MIR SINE MIR 72 250 -12 538 298 19 6 chr11 90116380 90116541 -58666931 + MIR3 SINE MIR 37 199 -9 202 273 11 68 chr11 90116628 90116716 -58666756 + MIR SINE MIR 90 172 -90 2165 78 16 60 chr11 90116818 90117137 -58666335 + AluY SINE Alu 1 305 -6 4493 150 19 23 chr11 90117246 90117301 -58666171 + L1PA16 LINE L1 5374 5428 -738 2052 136 3 0 chr11 90117301 90117610 -58665862 + AluSg SINE Alu 1 310 0 4493 150 19 23 chr11 90117610 90118349 -58665123 + L1PA16 LINE L1 5428 6165 -1 202 263 0 70 chr11 90118394 90118451 -58665021 + MIR SINE MIR 49 101 -107 236 196 20 0 chr11 90119149 90119200 -58664272 + (TTAGGG)n Simple_repeat Simple_repeat 1 52 0 268 176 0 0 chr11 90119531 90119582 -58663890 + L1ME3A LINE L1 6115 6165 -5 346 300 43 42 chr11 90119602 90119797 -58663675 + L1ME LINE L1 936 1437 -4709 406 242 41 10 chr11 90119876 90120070 -58663402 + L1ME LINE L1 1266 1465 -4931 620 279 31 9 chr11 90120138 90120364 -58663108 + L1ME LINE L1 1586 1816 -4580 236 252 150 52 chr11 90120379 90120799 -58662673 + L1ME LINE L1 3055 3515 -2700 6924 48 7 7 chr11 90121380 90122941 -58660531 - L1PA5 LINE L1 0 6154 4590 311 246 138 7 chr11 90123722 90123860 -58659612 - MLT1L LTR MaLR -1 614 459 220 184 0 0 chr11 90123940 90123978 -58659494 + GA-rich Low_complexity Low_complexity 2 39 0 336 280 83 72 chr11 90124025 90124218 -58659254 - MLT1L LTR MaLR -409 206 12 26 0 0 0 chr11 90124701 90124727 -58658745 + AT_rich Low_complexity Low_complexity 1 26 0 389 339 57 83 chr11 90124974 90125310 -58658162 - L2 LINE L2 -1 3271 2945 465 269 92 84 chr11 90125564 90126063 -58657409 - MLT1J LTR MaLR -7 504 2 356 296 25 49 chr11 90126394 90126556 -58656916 + MER5A DNA MER1_type 18 175 -14 492 346 57 0 chr11 90126691 90126919 -58656553 - MIR SINE MIR -10 252 12 1343 241 32 0 chr11 90127251 90127562 -58655910 + MER58B DNA MER1_type 19 339 -2 211 345 9 27 chr11 90127730 90127840 -58655632 + L3 LINE CR1 1078 1185 -392 344 314 63 38 chr11 90127840 90127978 -58655494 - MIR SINE MIR -1 261 113 2337 92 0 13 chr11 90127978 90128295 -58655177 + AluSq SINE Alu 1 313 0 344 314 63 38 chr11 90128295 90128395 -58655077 - MIR SINE MIR -149 113 17 373 274 118 33 chr11 90128398 90128643 -58654829 + L3 LINE CR1 1212 1477 -100 836 215 14 9 chr11 90130542 90130834 -58652638 + MLT1A1 LTR MaLR 1 363 -2 6907 53 20 0 chr11 90131078 90132232 -58651240 - L1PA5 LINE L1 -5 6149 4987 873 46 0 0 chr11 90132238 90132346 -58651126 + L1PA5 LINE L1 4852 4959 -1187 417 308 127 32 chr11 90133442 90133913 -58649559 + L1ME4a LINE L1 2668 3183 -2963 207 329 141 0 chr11 90134146 90134231 -58649241 + MIR SINE MIR 51 147 -115 223 311 68 0 chr11 90135408 90135511 -58647961 - MIR SINE MIR -48 214 105 23 0 0 0 chr11 90136590 90136613 -58646859 + AT_rich Low_complexity Low_complexity 1 23 0 935 330 92 26 chr11 90137095 90137924 -58645548 + L1ME4a LINE L1 4466 5348 -798 499 309 77 67 chr11 90137947 90138159 -58645313 + L1ME4a LINE L1 5393 5601 -520 2318 83 0 0 chr11 90138159 90138447 -58645025 + AluY SINE Alu 1 288 -23 207 0 0 0 chr11 90138450 90138473 -58644999 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 499 309 77 67 chr11 90138473 90138777 -58644695 + L1ME4a LINE L1 5602 5918 -203 2116 37 103 0 chr11 90139374 90139646 -58643826 + AluY SINE Alu 1 300 -11 23 0 0 0 chr11 90139694 90139717 -58643755 + AT_rich Low_complexity Low_complexity 1 23 0 185 378 61 0 chr11 90139985 90140067 -58643405 + L2 LINE L2 2772 2858 -456 380 327 87 0 chr11 90140605 90140781 -58642691 + MIR SINE MIR 44 235 -27 269 377 172 15 chr11 90140776 90141049 -58642423 + L2 LINE L2 2633 2948 -366 * 203 293 0 17 chr11 90141567 90141625 -58641847 - L2 LINE L2 -1 3312 3256 207 336 27 82 chr11 90141800 90141946 -58641526 + L2 LINE L2 3159 3296 -17 269 249 65 101 chr11 90141967 90142025 -58641447 + L2 LINE L2 3139 3198 -115 1009 256 9 0 chr11 90142025 90142244 -58641228 - MER58A DNA MER1_type -3 221 1 269 249 65 101 chr11 90142244 90142354 -58641118 + L2 LINE L2 3198 3301 -12 * 909 263 48 0 chr11 90142342 90142570 -58640902 - MIR SINE MIR -19 243 5 260 291 100 0 chr11 90143796 90143906 -58639566 - MIR3 SINE MIR -3 205 85 860 258 96 0 chr11 90144126 90144355 -58639117 - MIR SINE MIR -9 253 3 260 344 0 22 chr11 90144638 90144728 -58638744 + L2 LINE L2 3004 3091 -181 183 286 0 48 chr11 90146657 90146720 -58636752 + L2 LINE L2 3234 3293 -20 1885 107 0 22 chr11 90147639 90147910 -58635562 - AluSx SINE Alu -9 303 39 234 91 0 0 chr11 90148006 90148039 -58635433 + (ATG)n Simple_repeat Simple_repeat 3 35 0 390 42 0 0 chr11 90148736 90148784 -58634688 + (TG)n Simple_repeat Simple_repeat 1 48 0 239 318 34 23 chr11 90148828 90148916 -58634556 - L2 LINE L2 0 3272 3184 436 332 36 5 chr11 90149315 90149508 -58633964 - MIR SINE MIR -28 234 36 313 359 28 14 chr11 90149569 90149714 -58633758 + MIR SINE MIR 40 186 -76 262 227 160 0 chr11 90149743 90149818 -58633654 + L2 LINE L2 3213 3299 -14 184 250 0 0 chr11 90149835 90149879 -58633593 + L2 LINE L2 3213 3256 -16 300 299 118 28 chr11 90151021 90151165 -58632307 - MIR3 SINE MIR -10 198 42 22 56 0 0 chr11 90151181 90151217 -58632255 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr11 90151612 90151634 -58631838 + AT_rich Low_complexity Low_complexity 1 22 0 230 287 58 81 chr11 90151835 90152009 -58631463 - MIR SINE MIR -6 256 87 21 0 0 0 chr11 90152231 90152252 -58631220 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 90152746 90152774 -58630698 + AT_rich Low_complexity Low_complexity 1 28 0 302 159 14 0 chr11 90153378 90153447 -58630025 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 305 285 63 5 chr11 90155213 90155434 -58628038 + L1ME4a LINE L1 5634 5867 -254 22 0 0 0 chr11 90155740 90155762 -58627710 + AT_rich Low_complexity Low_complexity 1 22 0 286 299 67 34 chr11 90155923 90156044 -58627428 - MIR SINE MIR -61 147 36 3608 62 13 0 chr11 90156912 90157382 -58626090 + L1PA7 LINE L1 5677 6152 -2 989 215 13 6 chr11 90157612 90157906 -58625566 - MLT1A1 LTR MaLR 0 365 1 373 274 118 33 chr11 90159800 90160045 -58623427 - L3 LINE CR1 -100 1477 1212 344 314 63 38 chr11 90160048 90160148 -58623324 + MIR SINE MIR 17 113 -149 2330 92 0 13 chr11 90160148 90160464 -58623008 - AluSq SINE Alu -1 312 1 344 314 63 38 chr11 90160464 90160602 -58622870 + MIR SINE MIR 113 261 -1 211 345 9 27 chr11 90160602 90160712 -58622760 - L3 LINE CR1 -392 1185 1078 1343 241 32 0 chr11 90160880 90161191 -58622281 - MER58B DNA MER1_type -2 339 19 492 346 57 0 chr11 90161523 90161751 -58621721 + MIR SINE MIR 12 252 -10 356 296 25 49 chr11 90161886 90162048 -58621424 - MER5A DNA MER1_type -14 175 18 378 257 104 90 chr11 90162379 90162881 -58620591 + MLT1J LTR MaLR 2 510 -1 389 339 57 83 chr11 90163130 90163466 -58620006 + L2 LINE L2 2945 3271 -1 26 0 0 0 chr11 90163713 90163739 -58619733 + AT_rich Low_complexity Low_complexity 1 26 0 336 280 83 72 chr11 90164222 90164415 -58619057 + MLT1L LTR MaLR 12 206 -409 220 184 0 0 chr11 90164462 90164500 -58618972 + CT-rich Low_complexity Low_complexity 2 39 0 338 239 138 7 chr11 90164580 90164718 -58618754 + MLT1L LTR MaLR 459 614 -1 6912 47 15 5 chr11 90165460 90167021 -58616451 + L1PA5 LINE L1 4590 6154 0 248 374 81 0 chr11 90168220 90168343 -58615129 + L2 LINE L2 3140 3272 0 1270 286 100 67 chr11 90168897 90169797 -58613675 + L2 LINE L2 1697 2626 -688 1615 247 26 14 chr11 90169808 90170318 -58613154 + L1MD1 LINE L1 3655 4178 -1968 662 234 12 12 chr11 90170321 90170492 -58612980 + L1PB1 LINE L1 46 216 -6647 * 13704 192 43 17 chr11 90170469 90172925 -58610547 + L1PB1 LINE L1 1392 3781 -3086 2093 113 7 0 chr11 90172925 90173225 -58610247 + AluSx SINE Alu 11 312 0 13704 192 43 17 chr11 90173225 90176086 -58607386 + L1PB1 LINE L1 3781 6865 -2 3618 229 50 81 chr11 90176082 90176391 -58607081 + L1MD1 LINE L1 4156 4473 -1769 * 2135 120 3 0 chr11 90176391 90176683 -58606789 - AluSq SINE Alu -20 293 1 3618 229 50 81 chr11 90176683 90177591 -58605881 + L1MD1 LINE L1 4473 5408 -834 1458 224 36 28 chr11 90177591 90177953 -58605519 + MLT1A1 LTR MaLR 1 365 0 3618 229 50 81 chr11 90177953 90178025 -58605447 + L1MD1 LINE L1 5408 5481 -761 2867 0 0 0 chr11 90178025 90178336 -58605136 + AluYa5 SINE Alu 1 311 0 3618 229 50 81 chr11 90178336 90178897 -58604575 + L1MD1 LINE L1 5481 5934 -308 1706 186 3 0 chr11 90178897 90179204 -58604268 + AluJo SINE Alu 5 312 0 3618 229 50 81 chr11 90179204 90179488 -58603984 + L1MD1 LINE L1 5934 6225 -17 309 341 67 94 chr11 90179512 90180082 -58603390 + L2 LINE L2 2716 3272 0 1816 68 21 0 chr11 90180211 90180516 -58602956 - L1P3 LINE L1 -665 5507 5198 3719 74 28 0 chr11 90180516 90181015 -58602457 + L1PA8 LINE L1 5564 6076 -96 1048 199 58 64 chr11 90181015 90181579 -58601893 + LTR22B LTR ERVK 1 488 -4 705 89 0 0 chr11 90181620 90181721 -58601751 + L1PA8 LINE L1 6071 6171 -1 21 0 0 0 chr11 90181721 90181742 -58601730 + AT_rich Low_complexity Low_complexity 1 21 0 276 127 72 0 chr11 90182199 90182268 -58601204 + L1MA9 LINE L1 6225 6290 -1 235 351 113 24 chr11 90182756 90182924 -58600548 + MIR SINE MIR 52 234 -28 374 263 56 73 chr11 90182964 90183143 -58600329 + MIR SINE MIR 28 203 -59 321 233 117 71 chr11 90183835 90184116 -58599356 - L1MEd LINE L1 -4869 1250 1003 34 55 0 0 chr11 90185629 90185684 -58597788 + AT_rich Low_complexity Low_complexity 1 55 0 1585 149 87 31 chr11 90185800 90186155 -58597317 + THE1C LTR MaLR 1 375 0 342 306 116 48 chr11 90186386 90186680 -58596792 - L1MEd LINE L1 -5784 335 22 368 367 11 26 chr11 90187998 90188253 -58595219 + MIR SINE MIR 4 255 -7 1212 196 0 18 chr11 90188733 90188957 -58594515 - AluJb SINE Alu -21 291 72 238 218 18 18 chr11 90189186 90189241 -58594231 + MER5B DNA MER1_type 1 55 -123 1654 164 81 7 chr11 90189245 90189521 -58593951 + L1MC1 LINE L1 6001 6304 -29 355 145 65 0 chr11 90189521 90189583 -58593889 + L1MC1 LINE L1 6250 6315 -18 1654 164 81 7 chr11 90189583 90189616 -58593856 + L1MC1 LINE L1 6304 6333 0 189 289 132 44 chr11 90189616 90189730 -58593742 - MER5B DNA MER1_type -54 124 1 1833 162 77 160 chr11 90190300 90190770 -58592702 + Tigger2 DNA MER2_type 1 2715 -3 23 33 0 0 chr11 90191172 90191202 -58592270 + AT_rich Low_complexity Low_complexity 1 30 0 15916 103 5 7 chr11 90191357 90194518 -58588954 - L1PA7 LINE L1 -5 6149 2994 379 346 80 11 chr11 90194740 90194928 -58588544 + MIR SINE MIR 15 215 -47 2383 70 3 19 chr11 90195011 90195327 -58588145 + AluY SINE Alu 1 311 0 1056 277 3 26 chr11 90195511 90195854 -58587618 - MER46C DNA MER2_type -3 335 1 293 329 87 27 chr11 90195928 90196077 -58587395 + MIR3 SINE MIR 30 177 -31 396 174 33 0 chr11 90196113 90196205 -58587267 + L1MB3 LINE L1 6087 6181 -2 754 317 143 26 chr11 90196289 90196770 -58586702 - L2 LINE L2 0 3313 2782 226 298 75 50 chr11 90198621 90198782 -58584690 - MER20B DNA MER1_type -616 167 3 289 347 0 50 chr11 90199166 90199287 -58584185 + MIR3 SINE MIR 66 180 -28 209 379 105 20 chr11 90199502 90199655 -58583817 - L2 LINE L2 0 3272 3107 748 80 0 0 chr11 90199655 90199755 -58583717 + AluS SINE Alu 1 100 -213 2159 102 3 7 chr11 90199860 90200153 -58583319 + AluSc SINE Alu 1 292 -17 379 283 139 44 chr11 90200408 90200588 -58582884 + MIR SINE MIR 13 209 -53 537 256 62 98 chr11 90200690 90201021 -58582451 + MLT1G1 LTR MaLR 6 290 -300 582 311 30 19 chr11 90201745 90201963 -58581509 + MIR SINE MIR 34 256 -6 22 0 0 0 chr11 90203023 90203045 -58580427 + AT_rich Low_complexity Low_complexity 1 22 0 1073 217 32 0 chr11 90204549 90204766 -58578706 + MER58A DNA MER1_type 1 224 0 403 293 200 0 chr11 90206609 90206759 -58576713 + MIR SINE MIR 63 242 -20 351 0 0 0 chr11 90207696 90207735 -58575737 + (TG)n Simple_repeat Simple_repeat 2 40 0 228 354 0 13 chr11 90207833 90207912 -58575560 - MIR SINE MIR -174 88 11 2483 54 0 0 chr11 90208412 90208707 -58574765 + AluY SINE Alu 1 295 -16 334 271 46 79 chr11 90208923 90209134 -58574338 + MIR SINE MIR 30 237 -25 185 374 0 61 chr11 90209277 90209376 -58574096 - L2 LINE L2 -285 3028 2936 2023 136 3 0 chr11 90210278 90210587 -58572885 + AluSg SINE Alu 1 310 0 4234 156 20 5 chr11 90210587 90211326 -58572146 + L1PA16 LINE L1 5416 6165 -1 236 196 20 0 chr11 90212126 90212177 -58571295 + (TTAGGG)n Simple_repeat Simple_repeat 1 52 0 269 176 0 0 chr11 90212508 90212559 -58570913 + L1ME3A LINE L1 6115 6165 -5 347 300 43 42 chr11 90212579 90212774 -58570698 + L1MC4 LINE L1 936 1437 -4709 439 237 41 10 chr11 90212853 90213047 -58570425 + L1MC4 LINE L1 1266 1465 -4931 667 270 35 13 chr11 90213115 90213341 -58570131 + L1MC4 LINE L1 1586 1816 -4580 3102 273 125 23 chr11 90213356 90215430 -58568042 + L1ME3A LINE L1 2986 5272 -874 1500 265 99 37 chr11 90215466 90216178 -58567294 + L1ME3A LINE L1 5370 6157 -13 1817 153 56 32 chr11 90216228 90216606 -58566866 - L1MB1 LINE L1 0 6168 5782 303 221 44 11 chr11 90216698 90216788 -58566684 + L1MC4 LINE L1 1793 6770 -1341 294 217 0 0 chr11 90216762 90216831 -58566641 + (TATATG)n Simple_repeat Simple_repeat 2 70 0 * 1937 185 38 71 chr11 90216837 90217568 -58565904 - L1M3 LINE L1 -389 5791 5107 22 35 0 0 chr11 90218627 90218656 -58564816 + AT_rich Low_complexity Low_complexity 1 29 0 191 250 216 17 chr11 90218785 90218901 -58564571 - MIR SINE MIR -59 203 65 278 289 13 13 chr11 90219553 90219629 -58563843 + LTR16A LTR ERVL 375 450 0 217 214 0 114 chr11 90220127 90220197 -58563275 - L2 LINE L2 -5 3308 3247 250 345 120 0 chr11 90220653 90220795 -58562677 + L2 LINE L2 2354 2512 -802 254 260 0 0 chr11 90220833 90220883 -58562589 + MER106B DNA MER1_type 2 51 -1008 1682 176 7 0 chr11 90220897 90221175 -58562297 + MLT2C2 LTR ERVL 1 280 -184 237 65 0 0 chr11 90221175 90221206 -58562266 + (TC)n Simple_repeat Simple_repeat 1 31 0 564 170 0 137 chr11 90221247 90221429 -58562043 + MER106B DNA MER1_type 903 1059 0 190 401 81 23 chr11 90221480 90221652 -58561820 + L2 LINE L2 2573 2754 -560 363 288 41 20 chr11 90221666 90221813 -58561659 - MIR SINE MIR -59 149 44 42 0 0 0 chr11 90221831 90221873 -58561599 + AT_rich Low_complexity Low_complexity 1 42 0 5502 229 31 4 chr11 90221896 90223323 -58560149 + L1 LINE L1 2775 4239 -1907 396 125 31 0 chr11 90223322 90223386 -58560086 + L1PB4 LINE L1 5627 5692 -464 * 3583 44 11 0 chr11 90223384 90223857 -58559615 - L1PA4 LINE L1 -2736 3410 2933 15844 42 1 0 chr11 90223857 90226634 -58556838 + L1PA4 LINE L1 3417 6180 0 582 174 0 0 chr11 90226637 90226735 -58556737 + L1PB4 LINE L1 5683 5780 -376 627 149 125 0 chr11 90226736 90226868 -58556604 + L1PB4 LINE L1 6002 6149 -7 205 341 45 11 chr11 90226909 90226997 -58556475 - MIR SINE MIR -171 91 1 1000 253 22 4 chr11 90227226 90227451 -58556021 + MIR SINE MIR 3 231 -31 253 250 109 0 chr11 90228479 90228543 -58554929 + L2 LINE L2 3185 3255 -17 414 299 43 53 chr11 90228595 90228782 -58554690 - MER5A DNA MER1_type -3 186 2 479 302 121 23 chr11 90228812 90229027 -58554445 - MIR SINE MIR -1 261 26 307 300 128 33 chr11 90229636 90229816 -58553656 + MIR SINE MIR 63 259 -3 3404 132 17 0 chr11 90230009 90230540 -58552932 + L1PA15 LINE L1 5608 6147 -18 248 266 25 0 chr11 90231076 90231155 -58552317 + L2 LINE L2 3232 3312 -1 583 295 82 60 chr11 90231298 90231833 -58551639 + L1ME2 LINE L1 5340 5886 -278 208 319 0 0 chr11 90231960 90232032 -58551440 + (TA)n Simple_repeat Simple_repeat 1 72 0 203 376 40 24 chr11 90232368 90232493 -58550979 - L2 LINE L2 -2 3270 3144 235 351 0 0 chr11 90233138 90233195 -58550277 - L2 LINE L2 -16 3256 3200 187 224 0 20 chr11 90233242 90233291 -58550181 - L2 LINE L2 -2 3311 3264 1394 277 89 18 chr11 90234343 90234922 -58548550 - L2 LINE L2 -1 3312 2690 566 268 84 34 chr11 90234928 90235167 -58548305 - L2 LINE L2 -1232 2082 1832 3030 137 35 63 chr11 90235170 90235789 -58547683 - MER4B LTR ERV1 0 610 9 1415 131 68 4 chr11 90235811 90236047 -58547425 - MER4B-int LTR ERV1 -5 6753 6503 1159 143 0 0 chr11 90236063 90236224 -58547248 - AluY SINE Alu -150 161 1 1428 199 70 25 chr11 90236224 90236540 -58546932 - MER4B-int LTR ERV1 -496 6262 5933 612 171 5 166 chr11 90236815 90237026 -58546446 - MER4B-int LTR ERV1 -4168 3952 3776 910 166 14 37 chr11 90237346 90237563 -58545909 - MER4B-int LTR ERV1 -2659 3939 3728 1184 133 108 0 chr11 90237653 90237856 -58545616 + MER39B LTR ERV1 1 225 -428 1492 206 110 16 chr11 90238101 90238474 -58544998 + MER39B LTR ERV1 217 624 -29 418 159 15 98 chr11 90238553 90238685 -58544787 - MER4B-int LTR ERV1 -2953 3645 3525 * 1175 240 22 35 chr11 90238680 90238993 -58544479 - MER4B-int LTR ERV1 -4189 2142 1834 376 153 0 61 chr11 90239020 90239118 -58544354 - MER4B-int LTR ERV1 -5756 842 751 2396 152 139 29 chr11 90239162 90239688 -58543784 - MER4B-int LTR ERV1 -6014 584 1 3169 147 36 42 chr11 90239691 90240305 -58543167 - MER4B LTR ERV1 0 610 1 1243 296 113 27 chr11 90240305 90240897 -58542575 - L2 LINE L2 -1481 1833 1191 230 337 146 0 chr11 90241051 90241140 -58542332 + L2 LINE L2 3156 3257 -15 27 0 0 0 chr11 90241817 90241844 -58541628 + AT_rich Low_complexity Low_complexity 1 27 0 393 269 245 24 chr11 90241913 90242121 -58541351 - MIR SINE MIR -7 255 2 792 313 98 46 chr11 90243371 90243851 -58539621 - L2 LINE L2 0 3313 2772 2917 3 0 0 chr11 90243851 90244164 -58539308 + AluYb8 SINE Alu 1 313 -5 792 313 98 46 chr11 90244164 90244535 -58538937 - L2 LINE L2 -541 2772 2422 200 381 119 36 chr11 90244643 90244895 -58538577 - L2 LINE L2 -5 3267 2995 1624 205 37 8 chr11 90245033 90245414 -58538058 + MER95 LTR ERV 1 392 -39 3761 139 18 6 chr11 90245419 90246046 -58537426 - L1PA16 LINE L1 0 6166 5533 1345 127 5 0 chr11 90246046 90246259 -58537213 + L1PA16 LINE L1 5319 5532 -634 7155 152 6 17 chr11 90246978 90247076 -58536396 - Tigger1 DNA MER2_type -1 2417 2319 2106 168 69 10 chr11 90247076 90247480 -58535992 - MSTB1 LTR MaLR 0 432 5 7155 152 6 17 chr11 90247480 90248565 -58534907 - Tigger1 DNA MER2_type -99 2319 1247 1228 172 21 13 chr11 90248565 90248882 -58534590 - Ricksha DNA DNA -9 2845 2580 963 98 0 69 chr11 90248887 90248938 -58534534 - L1MA2 LINE L1 -3 6301 6248 2229 114 0 3 chr11 90248938 90249235 -58534237 - AluSc SINE Alu -13 296 1 963 98 0 69 chr11 90249235 90249356 -58534116 - L1MA2 LINE L1 -56 6248 6141 321 200 0 0 chr11 90249361 90249421 -58534051 + Tigger2 DNA MER2_type 2659 2718 0 1116 202 4 42 chr11 90249422 90249660 -58533812 - Ricksha DNA DNA -1830 1416 1188 2188 139 47 31 chr11 90249661 90249762 -58533710 - Ricksha DNA DNA -2745 501 403 2463 127 6 3 chr11 90249762 90250125 -58533347 - THE1B LTR MaLR 0 364 1 2188 139 47 31 chr11 90250125 90250448 -58533024 - Ricksha DNA DNA -2843 403 70 7228 137 40 25 chr11 90250458 90251673 -58531799 - Tigger1 DNA MER2_type -1176 1242 10 236 325 83 8 chr11 90251687 90251807 -58531665 + L2 LINE L2 1834 1962 -1352 351 311 46 50 chr11 90251905 90252207 -58531265 + L2 LINE L2 2290 2590 -724 4996 80 133 0 chr11 90252207 90252936 -58530536 + LTR12 LTR ERV1 1 826 0 4397 131 36 16 chr11 90252960 90253662 -58529810 + HERV9 LTR ERV1 1 716 -7683 295 95 24 0 chr11 90253655 90253697 -58529775 - LTR12 LTR ERV1 -659 55 13 * 297 273 0 0 chr11 90253697 90253763 -58529709 + L2 LINE L2 3206 3271 -1 276 260 154 32 chr11 90254402 90254525 -58528947 - MIR SINE MIR -105 157 20 182 37 37 0 chr11 90256562 90256589 -58526883 + (TAA)n Simple_repeat Simple_repeat 3 30 0 582 311 114 4 chr11 90256589 90256817 -58526655 - MIR SINE MIR -6 256 4 298 299 21 21 chr11 90258513 90258610 -58524862 + MIR SINE MIR 58 154 -108 5360 201 51 9 chr11 90258873 90261035 -58522437 + L1MB8 LINE L1 3928 6175 -3 225 0 0 0 chr11 90261167 90261192 -58522280 + (A)n Simple_repeat Simple_repeat 1 25 0 314 262 282 7 chr11 90262897 90263046 -58520426 - MIR SINE MIR -8 254 65 243 0 0 0 chr11 90264219 90264246 -58519226 + (A)n Simple_repeat Simple_repeat 1 27 0 210 91 0 0 chr11 90264288 90264321 -58519151 + (CA)n Simple_repeat Simple_repeat 2 34 0 191 360 0 0 chr11 90266008 90266058 -58517414 + L2 LINE L2 3185 3234 -38 1307 157 0 44 chr11 90266495 90266743 -58516729 + AluSg/x SINE Alu 76 312 0 22 35 0 0 chr11 90268040 90268069 -58515403 + AT_rich Low_complexity Low_complexity 1 29 0 259 287 148 0 chr11 90268474 90268575 -58514897 - MIR3 SINE MIR -3 205 90 499 294 82 13 chr11 90268885 90269109 -58514363 - MIR SINE MIR -13 249 19 424 324 29 15 chr11 90269899 90270035 -58513437 + MIR3 SINE MIR 14 151 -57 261 241 13 101 chr11 90271626 90271705 -58511767 - L2 LINE L2 0 3272 3201 351 269 19 19 chr11 90272673 90272829 -58510643 + (TA)n Simple_repeat Simple_repeat 2 157 0 399 232 0 61 chr11 90273570 90273669 -58509803 + MIR SINE MIR 33 125 -137 256 267 0 0 chr11 90273901 90273976 -58509496 + A-rich Low_complexity Low_complexity 1 75 0 187 262 0 49 chr11 90274941 90274995 -58508477 - MIR SINE MIR -46 216 166 522 299 52 16 chr11 90274995 90275189 -58508283 + MIR SINE MIR 1 201 -61 350 295 50 29 chr11 90275280 90275419 -58508053 + MIR SINE MIR 73 214 -48 21 36 0 0 chr11 90275578 90275606 -58507866 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr11 90276804 90276827 -58506645 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr11 90276875 90276906 -58506566 + AT_rich Low_complexity Low_complexity 1 31 0 211 167 13 51 chr11 90277628 90277706 -58505766 + (TTATA)n Simple_repeat Simple_repeat 1 75 0 312 342 0 0 chr11 90278125 90278239 -58505233 + (TA)n Simple_repeat Simple_repeat 1 114 0 212 83 0 28 chr11 90278246 90278282 -58505190 + (TG)n Simple_repeat Simple_repeat 2 36 0 319 329 82 24 chr11 90278871 90279041 -58504431 - MER5A DNA MER1_type 0 189 10 186 167 0 0 chr11 90279130 90279166 -58504306 + (CA)n Simple_repeat Simple_repeat 2 37 0 252 264 11 0 chr11 90279166 90279253 -58504219 - L1MC4 LINE L1 -1341 6701 6614 230 0 33 0 chr11 90279253 90279283 -58504189 + (TA)n Simple_repeat Simple_repeat 2 32 0 2477 71 0 0 chr11 90279283 90279580 -58503892 - AluY SINE Alu -14 297 1 238 329 101 39 chr11 90279588 90279895 -58503577 - L2 LINE L2 -605 2709 2384 185 374 0 61 chr11 90280469 90280568 -58502904 + L2 LINE L2 2936 3028 -285 320 248 58 91 chr11 90280711 90280922 -58502550 - MIR SINE MIR -25 237 30 2556 51 0 0 chr11 90281138 90281434 -58502038 - AluY SINE Alu -15 296 1 224 354 0 13 chr11 90281934 90282013 -58501459 + MIR SINE MIR 11 88 -174 279 0 0 0 chr11 90282111 90282142 -58501330 + (CA)n Simple_repeat Simple_repeat 2 32 0 398 300 200 0 chr11 90283079 90283229 -58500243 - MIR SINE MIR -20 242 63 247 294 186 49 chr11 90283518 90283926 -58499546 + L2 LINE L2 2849 3312 -1 23 54 0 0 chr11 90284160 90284197 -58499275 + AT_rich Low_complexity Low_complexity 1 37 0 451 310 125 0 chr11 90285196 90285396 -58498076 - MIR SINE MIR -26 236 12 545 31 0 0 chr11 90285775 90285839 -58497633 - L1PA7 LINE L1 -683 5471 5408 5062 77 22 0 chr11 90285839 90286511 -58496961 + L1PA7 LINE L1 5462 6150 -4 203 203 16 0 chr11 90290297 90290361 -58493111 + GA-rich Low_complexity Low_complexity 1 65 0 2487 4 0 0 chr11 90290582 90290849 -58492623 + AluYa5 SINE Alu 39 305 -6 22 0 0 0 chr11 90290878 90290900 -58492572 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr11 90291137 90291168 -58492304 + AT_rich Low_complexity Low_complexity 1 31 0 186 275 0 0 chr11 90291939 90291979 -58491493 - L2 LINE L2 -2 3311 3272 198 207 281 12 chr11 90292067 90292149 -58491323 - L2 LINE L2 -2 3311 3208 252 293 32 41 chr11 90292205 90292328 -58491144 - L2 LINE L2 -188 3084 2963 318 257 186 0 chr11 90293075 90293188 -58490284 + L2 LINE L2 3180 3313 0 247 224 15 0 chr11 90293270 90293337 -58490135 + (TA)n Simple_repeat Simple_repeat 2 69 0 303 226 128 72 chr11 90294101 90294336 -58489136 - L1MEd LINE L1 -4869 1250 1003 5866 101 10 1 chr11 90295930 90297240 -58486232 - L1P4 LINE L1 -370 5798 4479 265 295 29 38 chr11 90297595 90297700 -58485772 + L3 LINE CR1 1384 1487 -90 1380 101 0 0 chr11 90297832 90298021 -58485451 - AluYa5 SINE Alu -3 308 120 3197 240 46 2 chr11 90298132 90299230 -58484242 + L1 LINE L1 2367 3593 -2553 1271 170 9 0 chr11 90299335 90299564 -58483908 - L1M2 LINE L1 -605 5707 5477 8851 171 20 7 chr11 90299670 90302355 -58481117 - L1MA3 LINE L1 -10 6295 3575 218 273 61 0 chr11 90302455 90302521 -58480951 - MIR SINE MIR -111 151 82 853 275 74 42 chr11 90303635 90303658 -58479814 + L2 LINE L2 2848 2869 -444 2462 103 11 0 chr11 90303658 90304009 -58479463 + THE1A LTR MaLR 1 355 0 853 275 74 42 chr11 90304009 90304388 -58479084 + L2 LINE L2 2869 3263 -50 186 43 0 0 chr11 90304412 90304435 -58479037 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 937 233 20 38 chr11 90304619 90304911 -58478561 - L1MA9 LINE L1 -36 6276 5990 1028 124 0 18 chr11 90305012 90305181 -58478291 - AluY SINE Alu -145 166 1 4349 189 35 19 chr11 90305217 90305561 -58477911 - L1MB2 LINE L1 -22 7568 7231 468 0 0 0 chr11 90305561 90305613 -58477859 + (TG)n Simple_repeat Simple_repeat 2 53 0 4349 189 35 19 chr11 90305613 90306727 -58476745 - L1MB2 LINE L1 -359 7231 6093 2105 100 7 0 chr11 90307106 90307377 -58476095 - AluSx SINE Alu -16 296 24 322 220 33 99 chr11 90307461 90307592 -58475880 - MIR SINE MIR -48 160 33 294 322 58 49 chr11 90307916 90308121 -58475351 - MIR SINE MIR -55 207 1 10831 196 23 14 chr11 90309009 90310787 -58472685 - L1MB2 LINE L1 -4025 3540 1779 357 24 0 0 chr11 90310787 90310829 -58472643 + (TC)n Simple_repeat Simple_repeat 1 42 0 10831 196 23 14 chr11 90310829 90311874 -58471598 - L1MB2 LINE L1 -5786 1779 8 1181 165 32 0 chr11 90311881 90312130 -58471342 - L1M3 LINE L1 -703 5480 5225 227 302 114 0 chr11 90312162 90312291 -58471181 - MIR SINE MIR -56 206 58 213 39 0 0 chr11 90312302 90312328 -58471144 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 1785 120 11 0 chr11 90312328 90312594 -58470878 - L1PA8 LINE L1 -25 6147 5879 234 0 0 0 chr11 90313012 90313038 -58470434 + (A)n Simple_repeat Simple_repeat 1 26 0 1180 239 109 21 chr11 90313923 90314300 -58469172 + LTR40b LTR ERVL 51 460 -2 658 241 109 65 chr11 90314309 90314465 -58469007 + HERVL40 LTR ERVL 17 165 -5365 2041 128 38 0 chr11 90314465 90314754 -58468718 + AluSx SINE Alu 1 300 -12 658 241 109 65 chr11 90314754 90314891 -58468581 + HERVL40 LTR ERVL 165 323 -5207 224 177 32 0 chr11 90315114 90315176 -58468296 + (TATATG)n Simple_repeat Simple_repeat 6 69 0 267 189 0 19 chr11 90315371 90315424 -58468048 - HERVL40 LTR ERVL -1981 3549 3498 1065 227 70 4 chr11 90315427 90315669 -58467803 + HERVL40 LTR ERVL 3292 3549 -1981 2911 91 15 7 chr11 90315766 90316171 -58467301 + MLT2A1 LTR ERVL 1 408 -36 29339 78 17 3 chr11 90316171 90321246 -58462226 + HERVL-A1-A1 LTR ERVL 26 5248 -406 217 26 53 26 chr11 90321246 90321284 -58462188 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 29339 78 17 3 chr11 90321284 90321697 -58461775 + HERVL-A1-A1 LTR ERVL 5248 5654 0 2977 83 57 5 chr11 90321697 90322084 -58461388 + MLT2A1 LTR ERVL 1 413 -31 309 26 0 0 chr11 90322084 90322122 -58461350 + (CA)n Simple_repeat Simple_repeat 2 39 0 2977 83 57 5 chr11 90322122 90322156 -58461316 + MLT2A1 LTR ERVL 413 444 0 237 269 106 43 chr11 90322329 90322470 -58461002 - L2 LINE L2 -191 3081 2932 239 326 76 14 chr11 90322486 90322630 -58460842 + MIR SINE MIR 20 172 -90 1395 229 92 67 chr11 90322679 90323247 -58460225 - MER34C LTR ERV1 0 585 4 252 273 47 93 chr11 90323546 90323696 -58459776 - MIR SINE MIR 0 262 120 657 235 96 0 chr11 90323779 90323945 -58459527 + MER5A DNA MER1_type 8 189 0 381 238 0 0 chr11 90324080 90324164 -58459308 - Charlie8 DNA MER1_type -2252 165 82 1348 210 165 26 chr11 90324177 90324601 -58458871 + LTR54B LTR ERV1 14 496 -2 360 175 0 0 chr11 90324872 90324929 -58458543 + MER5A DNA MER1_type 8 64 -125 24 0 0 0 chr11 90325883 90325907 -58457565 + AT_rich Low_complexity Low_complexity 1 24 0 1483 202 86 38 chr11 90326274 90326738 -58456734 + MER39 LTR ERV1 5 707 0 632 200 33 50 chr11 90327739 90327843 -58455629 + L1MC4 LINE L1 5795 5899 -1909 1211 208 93 25 chr11 90327843 90328165 -58455307 + MER2 DNA MER2_type 1 344 0 632 200 33 50 chr11 90328165 90328194 -58455278 + L1MC4 LINE L1 5899 5927 -1881 1535 207 112 71 chr11 90328194 90328813 -58454659 - LTR48B LTR ERV1 0 644 1 632 200 33 50 chr11 90328813 90328858 -58454614 + L1MC4 LINE L1 5927 5971 -1837 1124 216 85 46 chr11 90328860 90329485 -58453987 - MER39 LTR ERV1 -2 628 1 1237 142 32 14 chr11 90329516 90329735 -58453737 - MER83 LTR ERV1 0 448 226 436 106 0 0 chr11 90329731 90329797 -58453675 - MER83 LTR ERV1 -382 66 1 * 484 209 14 7 chr11 90329807 90329946 -58453526 + L1MC4 LINE L1 7071 7210 -832 23055 180 15 35 chr11 90329989 90336570 -58446902 + L1PA11 LINE L1 1 6488 -1 2284 235 50 19 chr11 90336571 90337311 -58446161 + L1MC4 LINE L1 7278 8040 -2 373 304 52 32 chr11 90337575 90337982 -58445490 + L1MEd LINE L1 915 1369 -4884 21 0 0 0 chr11 90338259 90338280 -58445192 + AT_rich Low_complexity Low_complexity 1 21 0 677 265 52 19 chr11 90338705 90338916 -58444556 - MIR SINE MIR -43 219 2 374 263 115 26 chr11 90338927 90339197 -58444275 + L1ME4a LINE L1 5782 6075 -46 369 284 41 53 chr11 90339558 90339727 -58443745 - MIR3 SINE MIR -4 204 38 342 310 26 18 chr11 90339729 90339842 -58443630 - MIR SINE MIR -129 133 20 605 182 47 18 chr11 90340087 90340257 -58443215 - L1MA2 LINE L1 -15 6289 6115 425 311 112 12 chr11 90341022 90341183 -58442289 - MIR SINE MIR -44 218 42 185 247 68 41 chr11 90342302 90342375 -58441097 - MIR SINE MIR -108 154 80 355 298 99 13 chr11 90342773 90342924 -58440548 - MIR SINE MIR -18 244 81 496 307 56 43 chr11 90344664 90344895 -58438577 - MIR SINE MIR -16 246 13 1153 149 116 47 chr11 90345016 90345317 -58438155 - MER33 DNA MER1_type -2 322 1 426 287 5 27 chr11 90346383 90346571 -58436901 + L1M4 LINE L1 55 238 -6304 1764 260 89 67 chr11 90346761 90348204 -58435268 + L1M4 LINE L1 517 1973 -4673 1247 260 59 13 chr11 90348187 90348560 -58434912 + L1MD2 LINE L1 5709 6098 -261 * 905 210 13 0 chr11 90348679 90348836 -58434636 - FRAM SINE Alu -6 160 2 389 240 94 0 chr11 90348889 90348985 -58434487 + ERVL LTR ERVL 5166 5270 -494 1437 231 40 14 chr11 90349206 90349634 -58433838 + L1P LINE L1 2956 3394 -2752 * 2324 118 11 25 chr11 90349631 90349997 -58433475 + L1P4 LINE L1 5387 5747 -419 396 59 0 0 chr11 90350032 90350083 -58433389 + (CA)n Simple_repeat Simple_repeat 1 51 0 377 338 76 0 chr11 90350675 90350832 -58432640 - MIR SINE MIR -16 246 78 207 350 158 9 chr11 90350832 90350972 -58432500 - MIR SINE MIR -80 182 23 524 274 13 51 chr11 90350972 90351129 -58432343 + MIR SINE MIR 7 157 -105 3654 177 91 7 chr11 90351839 90352734 -58430738 - L1MB7 LINE L1 -44 6140 5171 1259 294 142 34 chr11 90352789 90353354 -58430118 - L1M2c LINE L1 -6156 633 8 207 116 0 47 chr11 90353675 90353718 -58429754 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 372 194 28 0 chr11 90353720 90353792 -58429680 - L2 LINE L2 0 3313 3240 2567 36 0 10 chr11 90354401 90354703 -58428769 - AluY SINE Alu -12 299 1 542 307 28 38 chr11 90355303 90355515 -58427957 + MER63A DNA MER1_type 1 210 0 254 297 172 8 chr11 90356704 90356832 -58426640 + MIR SINE MIR 47 195 -67 327 336 57 16 chr11 90357036 90357158 -58426314 + MIR3 SINE MIR 1 127 -81 201 339 107 16 chr11 90357738 90357859 -58425613 + L2 LINE L2 2907 3038 -275 1939 242 78 14 chr11 90357864 90358418 -58425054 + L1ME2 LINE L1 5565 6153 -11 187 189 0 0 chr11 90358478 90358515 -58424957 + MER5A DNA MER1_type 129 165 -24 266 341 49 16 chr11 90358705 90358828 -58424644 + MER5B DNA MER1_type 4 130 -48 764 347 31 31 chr11 90358852 90359302 -58424170 + L1MA4 LINE L1 1534 1983 -5503 1447 348 134 5 chr11 90360404 90361180 -58422292 + L1MA4 LINE L1 1900 2775 -4790 11499 164 19 68 chr11 90361207 90361949 -58421523 + L1MA4 LINE L1 3882 4659 -2906 307 78 20 0 chr11 90361949 90362000 -58421472 + MADE1 DNA Mariner 29 80 0 11499 164 19 68 chr11 90362000 90363914 -58419558 + L1MA4 LINE L1 4659 6456 -1109 247 143 0 16 chr11 90363913 90363973 -58419499 + L1MA4 LINE L1 7154 7210 -500 * 201 39 0 0 chr11 90363981 90364007 -58419465 + (TA)n Simple_repeat Simple_repeat 1 26 0 2826 143 14 16 chr11 90364007 90364516 -58418956 + L1MA4 LINE L1 7201 7708 -11 2354 118 80 15 chr11 90364782 90365182 -58418290 + MSTA LTR MaLR 3 428 0 382 297 14 29 chr11 90365182 90365310 -58418162 + MIR SINE MIR 13 140 -122 1097 138 0 0 chr11 90365522 90365681 -58417791 + AluSq SINE Alu 138 296 -17 228 206 0 0 chr11 90366393 90366427 -58417045 + L2 LINE L2 3204 3237 -35 383 288 57 28 chr11 90367010 90367187 -58416285 + MIR3 SINE MIR 9 190 -18 1578 146 75 41 chr11 90367425 90367719 -58415753 - AluSx SINE Alu -8 304 1 1130 307 84 22 chr11 90367737 90368247 -58415225 + L2 LINE L2 2776 3313 0 701 310 45 17 chr11 90368251 90368538 -58414934 + L2 LINE L2 2836 3130 -183 1692 247 34 39 chr11 90368539 90369004 -58414468 + LTR16B LTR ERVL 2 464 0 305 284 98 20 chr11 90369026 90369128 -58414344 + L2 LINE L2 3161 3270 -43 271 305 133 0 chr11 90369768 90369896 -58413576 + L2 LINE L2 3117 3261 -52 229 172 31 0 chr11 90370278 90370342 -58413130 + CT-rich Low_complexity Low_complexity 2 67 0 299 175 0 0 chr11 90370700 90370761 -58412711 - MIR SINE MIR -78 130 70 2593 120 22 91 chr11 90371149 90371822 -58411650 - MER4E LTR ERV1 0 779 1 943 202 212 54 chr11 90373402 90373879 -58409593 + MER34B LTR ERV1 5 782 -5 232 214 0 57 chr11 90373893 90373963 -58409509 - L2 LINE L2 -77 3236 3171 522 214 17 17 chr11 90374020 90374137 -58409335 + FLAM_A SINE Alu 5 121 -12 2189 102 0 0 chr11 90374681 90374974 -58408498 - AluSg1 SINE Alu -16 293 1 26 0 0 0 chr11 90375135 90375161 -58408311 + AT_rich Low_complexity Low_complexity 1 26 0 252 0 0 0 chr11 90375299 90375327 -58408145 + (CA)n Simple_repeat Simple_repeat 1 28 0 226 288 25 0 chr11 90375677 90375757 -58407715 + L2 LINE L2 2897 2978 -294 1386 227 3 31 chr11 90375792 90376145 -58407327 - L1PA16 LINE L1 -1033 5113 4771 * 5822 138 8 20 chr11 90376144 90377215 -58406257 + L1PA16 LINE L1 5108 6157 -9 290 320 129 27 chr11 90377226 90377451 -58406021 + L2 LINE L2 3023 3270 -43 1211 233 55 19 chr11 90377461 90377816 -58405656 - MLT1C LTR MaLR -89 378 1 1058 296 78 38 chr11 90378003 90378480 -58404992 - L2 LINE L2 -1 3312 2817 30 59 0 0 chr11 90378593 90378644 -58404828 + AT_rich Low_complexity Low_complexity 1 51 0 27 0 0 0 chr11 90378752 90378779 -58404693 + AT_rich Low_complexity Low_complexity 1 27 0 2139 76 19 67 chr11 90379023 90379337 -58404135 - AluY SINE Alu -12 299 1 488 313 90 6 chr11 90379644 90379810 -58403662 - MIR SINE MIR -70 192 13 1865 166 0 6 chr11 90379906 90380097 -58403375 - AluSx SINE Alu 0 312 122 243 0 0 0 chr11 90380097 90380124 -58403348 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1865 166 0 6 chr11 90380124 90380246 -58403226 - AluSx SINE Alu -190 122 1 186 103 0 0 chr11 90380309 90380338 -58403134 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 850 237 103 9 chr11 90380441 90380673 -58402799 - MIR SINE MIR -3 259 6 22 35 0 0 chr11 90380690 90380719 -58402753 + AT_rich Low_complexity Low_complexity 1 29 0 1148 225 7 25 chr11 90381336 90381612 -58401860 + AluJb SINE Alu 5 275 -37 739 290 28 20 chr11 90381894 90382149 -58401323 + MIR SINE MIR 5 261 -1 288 239 73 0 chr11 90382601 90382710 -58400762 + L1ME4a LINE L1 6002 6118 -3 208 370 46 57 chr11 90383178 90383548 -58399924 + L2 LINE L2 1220 1585 -1729 230 354 114 23 chr11 90383574 90384091 -58399381 + L2 LINE L2 2005 2568 -746 41 66 0 0 chr11 90384125 90384201 -58399271 + AT_rich Low_complexity Low_complexity 1 76 0 423 106 0 0 chr11 90384224 90384290 -58399182 + (TGGA)n Simple_repeat Simple_repeat 1 66 0 1011 110 0 0 chr11 90384415 90384551 -58398921 + FRAM SINE Alu 30 165 -11 24 32 0 0 chr11 90385223 90385254 -58398218 + AT_rich Low_complexity Low_complexity 1 31 0 790 285 77 71 chr11 90385600 90386205 -58397267 + L2 LINE L2 2665 3311 -2 2058 243 86 105 chr11 90386533 90387199 -58396273 - L1MEc LINE L1 -3873 2523 1846 6757 60 16 0 chr11 90387199 90388105 -58395367 + L1PA7 LINE L1 5219 6138 -16 2058 243 86 105 chr11 90388105 90388692 -58394780 - L1MEc LINE L1 -4550 1846 1314 1472 195 57 68 chr11 90388692 90389061 -58394411 + MLT1A1 LTR MaLR 1 365 0 2058 243 86 105 chr11 90389061 90389705 -58393767 - L1MEc LINE L1 -5082 1314 660 308 364 7 7 chr11 90390116 90390267 -58393205 - L1MEc LINE L1 -6191 205 55 588 208 51 17 chr11 90390301 90390479 -58392993 - Charlie2a DNA MER1_type -1214 1648 1465 948 293 70 13 chr11 90390528 90390900 -58392572 - Charlie2b DNA MER1_type -2108 674 282 180 0 0 0 chr11 90391676 90391696 -58391776 + (T)n Simple_repeat Simple_repeat 1 20 0 637 242 31 12 chr11 90391978 90392139 -58391333 - L2 LINE L2 -1 3312 3149 24 32 0 0 chr11 90392797 90392828 -58390644 + AT_rich Low_complexity Low_complexity 1 31 0 201 121 0 0 chr11 90393335 90393368 -58390104 + (TCCA)n Simple_repeat Simple_repeat 2 34 0 497 207 54 0 chr11 90394056 90394167 -58389305 - MIR SINE MIR -44 218 102 2046 189 16 18 chr11 90394238 90394624 -58388848 - MLT1B LTR MaLR -5 385 1 351 258 92 81 chr11 90394627 90394833 -58388639 - MIR SINE MIR -28 234 30 27 29 0 0 chr11 90395362 90395396 -58388076 + AT_rich Low_complexity Low_complexity 1 34 0 476 169 67 0 chr11 90395423 90395512 -58387960 - Tigger2 DNA MER2_type -10 2708 2614 1250 161 18 14 chr11 90395513 90395731 -58387741 + MER49 LTR ERV1 1 219 -704 * 8653 138 32 29 chr11 90395729 90396162 -58387310 - Tigger2 DNA MER2_type -1205 1513 1083 2157 125 0 0 chr11 90396162 90396519 -58386953 - AluSx SINE Alu 0 312 5 8653 138 32 29 chr11 90396519 90397593 -58385879 - Tigger2 DNA MER2_type -1635 1083 1 1367 273 59 22 chr11 90397607 90398250 -58385222 - L1ME3A LINE L1 -230 5940 5268 1169 293 79 49 chr11 90398346 90399552 -58383920 - L1ME3A LINE L1 -932 5214 3973 524 304 60 24 chr11 90400166 90400547 -58382925 - HAL1 LINE L1 -938 1569 1175 27 0 0 0 chr11 90400638 90400665 -58382807 + AT_rich Low_complexity Low_complexity 1 27 0 326 320 45 70 chr11 90401262 90401418 -58382054 + L2 LINE L2 3121 3272 0 304 207 0 0 chr11 90401507 90401565 -58381907 + MIR SINE MIR 72 129 -133 270 361 23 23 chr11 90401689 90401819 -58381653 + MIR SINE MIR 23 152 -56 409 329 53 10 chr11 90401838 90402045 -58381427 + MIR SINE MIR 41 256 -6 2167 298 34 38 chr11 90403191 90404220 -58379252 + L2 LINE L2 2282 3311 -2 210 162 0 0 chr11 90404499 90404536 -58378936 + CT-rich Low_complexity Low_complexity 5 41 0 21 57 0 0 chr11 90405215 90405250 -58378222 + AT_rich Low_complexity Low_complexity 1 35 0 294 288 50 44 chr11 90405371 90405531 -58377941 + L2 LINE L2 3008 3168 -145 23 68 0 0 chr11 90406386 90406430 -58377042 + AT_rich Low_complexity Low_complexity 1 44 0 256 176 14 14 chr11 90407365 90407439 -58376033 + (TA)n Simple_repeat Simple_repeat 1 74 0 1926 278 44 73 chr11 90408731 90409923 -58373549 + MER69B DNA AcHobo 17 1173 -53 1902 107 8 0 chr11 90410330 90410593 -58372879 + AluY SINE Alu 39 303 -8 263 149 21 0 chr11 90411212 90411259 -58372213 + L1ME4a LINE L1 5618 5665 -456 1679 201 133 102 chr11 90411440 90412163 -58371309 - LTR1B LTR ERV1 -81 745 1 429 311 95 41 chr11 90412170 90412537 -58370935 + L1ME4a LINE L1 5734 6120 -1 2255 87 7 7 chr11 90412704 90413002 -58370470 + AluY SINE Alu 1 298 -13 22 80 0 0 chr11 90413037 90413087 -58370385 + AT_rich Low_complexity Low_complexity 1 50 0 238 238 20 40 chr11 90413749 90413850 -58369622 + GA-rich Low_complexity Low_complexity 1 99 0 4105 139 96 5 chr11 90413982 90414739 -58368733 + LTR1B LTR ERV1 1 826 0 251 292 17 100 chr11 90415848 90415968 -58367504 - MIR SINE MIR -122 140 31 446 286 61 14 chr11 90416834 90416981 -58366491 - MIR SINE MIR -6 256 103 2193 135 80 10 chr11 90417051 90417451 -58366021 + MSTA LTR MaLR 1 428 0 202 310 35 35 chr11 90417850 90417937 -58365535 + L2 LINE L2 3227 3313 0 580 259 110 11 chr11 90418022 90418227 -58365245 + MIR SINE MIR 22 243 -19 228 240 280 29 chr11 90418348 90418523 -58364949 - L3 LINE CR1 -185 1392 1174 307 331 73 44 chr11 90418540 90418676 -58364796 - L2 LINE L2 0 3272 3133 309 333 138 0 chr11 90418685 90418808 -58364664 - L3 LINE CR1 -418 1159 1020 1990 161 39 6 chr11 90419002 90419363 -58364109 - MER83C LTR ERV1 0 373 1 2099 140 14 20 chr11 90419376 90419726 -58363746 - MER83C-int LTR ERV1 -6 4874 4527 4217 226 70 34 chr11 90419942 90420206 -58363266 - MER83C-int LTR ERV1 -3876 1004 751 4972 78 8 1 chr11 90420206 90420862 -58362610 + PABL_A LTR ERV1 1 660 0 4217 226 70 34 chr11 90420862 90421810 -58361662 - MER83C-int LTR ERV1 -4129 751 12 1900 176 48 3 chr11 90421810 90422167 -58361305 - MER83C LTR ERV1 0 373 1 223 350 95 51 chr11 90422880 90423160 -58360312 + L2 LINE L2 2779 3075 -238 271 325 170 42 chr11 90423254 90423466 -58360006 - MIR SINE MIR -4 258 20 1891 241 109 52 chr11 90423498 90424304 -58359168 + LTR28 LTR ERV1 1 983 -37 240 226 32 16 chr11 90424291 90424353 -58359119 + LTR28 LTR ERV1 871 933 -87 * 1895 87 4 0 chr11 90424353 90424607 -58358865 + L1PA7 LINE L1 5899 6153 -1 21 0 0 0 chr11 90424735 90424756 -58358716 + AT_rich Low_complexity Low_complexity 1 21 0 1466 223 36 30 chr11 90425027 90425390 -58358082 + MLT1A1 LTR MaLR 1 365 0 227 346 81 29 chr11 90425409 90425545 -58357927 + L2 LINE L2 3127 3269 -3 285 98 0 0 chr11 90425868 90425909 -58357563 + (TG)n Simple_repeat Simple_repeat 2 42 0 235 259 62 0 chr11 90425994 90426075 -58357397 - MIR SINE MIR -2 260 175 255 127 380 14 chr11 90426149 90426220 -58357252 + MER4A LTR ERV1 1 97 -567 1727 139 158 75 chr11 90426221 90426594 -58356878 + MER4A LTR ERV1 261 664 0 249 311 98 30 chr11 90427506 90427638 -58355834 + MIR SINE MIR 119 259 -3 651 285 5 45 chr11 90427805 90428005 -58355467 + MIR SINE MIR 71 262 0 344 130 19 0 chr11 90428021 90428075 -58355397 - MLT2C1 LTR ERVL 0 554 500 2410 125 28 14 chr11 90428093 90428452 -58355020 + THE1B LTR MaLR 1 364 0 10907 106 23 0 chr11 90428452 90429995 -58353477 + THE1B-int LTR MaLR 1 1579 -1 2480 112 36 14 chr11 90429995 90430351 -58353121 + THE1B LTR MaLR 1 364 0 1061 170 70 0 chr11 90430359 90430559 -58352913 - MLT2C1 LTR ERVL -55 342 129 7221 56 0 1 chr11 90430559 90432243 -58351229 + L1PA5 LINE L1 4457 6141 -13 717 176 7 7 chr11 90432370 90432512 -58350960 - MLT2C1 LTR ERVL -255 142 1 2842 135 120 42 chr11 90432550 90433151 -58350321 + MER39B LTR ERV1 1 648 -5 275 306 94 50 chr11 90433719 90433879 -58349593 - L2 LINE L2 0 3272 3106 196 388 30 8 chr11 90435833 90435967 -58347505 + L2 LINE L2 2616 2752 -562 283 277 69 0 chr11 90436158 90436259 -58347213 + MIR SINE MIR 57 164 -98 232 237 53 13 chr11 90436300 90436362 -58347110 + MIR SINE MIR 148 215 -47 1776 112 8 0 chr11 90436362 90436604 -58346868 + AluSp SINE Alu 54 297 -16 232 237 53 13 chr11 90436604 90436617 -58346855 + MIR SINE MIR 215 226 -36 384 268 84 56 chr11 90436814 90436956 -58346516 + MIR SINE MIR 47 192 -70 191 173 13 53 chr11 90437330 90437405 -58346067 + GA-rich Low_complexity Low_complexity 4 75 0 194 275 133 42 chr11 90438094 90438214 -58345258 - MIR SINE MIR -46 216 86 760 256 83 17 chr11 90438232 90438462 -58345010 - MIR SINE MIR -14 248 4 354 243 87 0 chr11 90439541 90439644 -58343828 + L2 LINE L2 2712 2823 -491 4627 147 22 19 chr11 90439652 90440500 -58342972 + L1MA4 LINE L1 5449 6299 -1 3220 107 14 8 chr11 90440750 90441237 -58342235 + L1PA13 LINE L1 5668 6157 -6 26 74 0 0 chr11 90441240 90441294 -58342178 + AT_rich Low_complexity Low_complexity 1 54 0 357 298 114 25 chr11 90441384 90441629 -58341843 + L1ME4a LINE L1 5127 5393 -753 22 0 0 0 chr11 90441700 90441722 -58341750 + AT_rich Low_complexity Low_complexity 1 22 0 629 296 78 32 chr11 90441774 90442119 -58341353 + L1ME4a LINE L1 5563 5923 -198 22 0 0 0 chr11 90442688 90442710 -58340762 + AT_rich Low_complexity Low_complexity 1 22 0 295 303 10 20 chr11 90442763 90442862 -58340610 - Charlie7 DNA MER1_type -2510 102 5 4551 191 62 10 chr11 90443521 90444518 -58338954 + L1MC3 LINE L1 5683 6731 -1054 1781 197 30 54 chr11 90444538 90445035 -58338437 + L1MC3 LINE L1 6510 6994 -791 441 254 100 0 chr11 90445056 90445186 -58338286 + L1MA10 LINE L1 6169 6311 -23 872 298 70 10 chr11 90445207 90445870 -58337602 + L1ME3 LINE L1 5185 5895 -267 30 69 0 0 chr11 90446143 90446201 -58337271 + AT_rich Low_complexity Low_complexity 1 58 0 874 179 17 50 chr11 90446510 90446689 -58336783 + AluJb SINE Alu 140 312 0 264 203 0 58 chr11 90448346 90448415 -58335057 - MER5A DNA MER1_type -99 90 26 2079 146 0 3 chr11 90449570 90449878 -58333594 - AluSx SINE Alu -5 307 1 698 127 0 8 chr11 90450620 90450738 -58332734 + (GGGA)n Simple_repeat Simple_repeat 4 120 0 2444 197 128 126 chr11 90450801 90451274 -58332198 + L1MC4 LINE L1 6775 7246 -796 651 165 38 53 chr11 90451274 90451407 -58332065 + FLAM_C SINE Alu 1 131 -12 2444 197 128 126 chr11 90451407 90451912 -58331560 + L1MC4 LINE L1 7246 7887 -155 742 204 22 0 chr11 90451953 90452090 -58331382 + AluJo SINE Alu 1 140 -172 192 228 0 0 chr11 90452090 90452147 -58331325 + (TA)n Simple_repeat Simple_repeat 2 58 0 331 221 159 0 chr11 90452150 90452263 -58331209 + L1MC4 LINE L1 7908 8038 -4 562 233 60 0 chr11 90452469 90452585 -58330887 + MIR SINE MIR 19 141 -121 205 345 176 14 chr11 90453468 90453610 -58329862 - MIR SINE MIR -90 172 8 216 200 0 0 chr11 90454459 90454514 -58328958 + T-rich Low_complexity Low_complexity 1 55 0 316 220 22 39 chr11 90454854 90455036 -58328436 + (TTATA)n Simple_repeat Simple_repeat 2 180 0 268 219 12 37 chr11 90455573 90455655 -58327817 + CT-rich Low_complexity Low_complexity 5 84 0 583 237 124 0 chr11 90456132 90456326 -58327146 + L1MC4 LINE L1 6458 6675 -1367 640 242 68 31 chr11 90456336 90456640 -58326832 + L1MC4 LINE L1 7307 7712 -330 300 296 43 9 chr11 90456761 90456876 -58326596 + L1MC4 LINE L1 7774 7892 -150 26 30 0 0 chr11 90456943 90456976 -58326496 + AT_rich Low_complexity Low_complexity 1 33 0 756 288 68 4 chr11 90457083 90457319 -58326153 - MIR SINE MIR 0 262 12 1051 199 11 0 chr11 90457649 90457835 -58325637 - MER5A DNA MER1_type 0 189 2 361 296 121 8 chr11 90458035 90458167 -58325305 - L2 LINE L2 0 3313 3167 1893 158 0 0 chr11 90458917 90459223 -58324249 + AluSx SINE Alu 3 308 0 445 320 55 11 chr11 90459533 90459714 -58323758 - MIR3 SINE MIR -10 198 10 21 0 0 0 chr11 90460641 90460662 -58322810 + AT_rich Low_complexity Low_complexity 1 21 0 205 171 0 0 chr11 90460787 90460822 -58322650 + (CAA)n Simple_repeat Simple_repeat 2 36 0 905 263 32 16 chr11 90460824 90461075 -58322397 - MIR SINE MIR -1 261 7 517 268 39 13 chr11 90461694 90461847 -58321625 + MIR3 SINE MIR 37 193 -15 1220 161 54 0 chr11 90462490 90462714 -58320758 + MER46A DNA MER2_type 1 236 0 299 280 27 0 chr11 90462765 90462840 -58320632 - L2 LINE L2 -1392 1922 1846 546 277 10 45 chr11 90462850 90463052 -58320420 + L2 LINE L2 3119 3313 0 318 366 13 59 chr11 90463024 90463177 -58320295 - L2 LINE L2 -10 3262 3117 * 2435 77 0 3 chr11 90463497 90463809 -58319663 - AluY SINE Alu 0 311 1 731 282 108 4 chr11 90463947 90464177 -58319295 + MIR SINE MIR 3 256 -6 454 248 80 0 chr11 90464240 90464353 -58319119 - L2 LINE L2 0 3313 3192 2303 79 0 7 chr11 90464577 90464868 -58318604 - AluY SINE Alu -22 289 1 212 227 0 0 chr11 90465140 90465184 -58318288 + L2 LINE L2 3270 3313 0 2205 109 3 0 chr11 90465869 90466208 -58317264 + AluSx SINE Alu 1 312 0 705 308 57 1 chr11 90466298 90466607 -58316865 + LTR33 LTR ERVL 1 358 -163 212 293 121 35 chr11 90466784 90466900 -58316572 - MIR SINE MIR 0 262 137 525 265 183 53 chr11 90466976 90467353 -58316119 + MLT1H LTR MaLR 110 535 -14 226 409 41 6 chr11 90467588 90467759 -58315713 + L2 LINE L2 2797 2973 -341 262 337 34 0 chr11 90467894 90467983 -58315489 + L2 LINE L2 3197 3288 -25 749 245 43 14 chr11 90468983 90469191 -58314281 + MER58C DNA MER1_type 1 214 -1 701 294 96 0 chr11 90469258 90469476 -58313996 - MIR SINE MIR -1 261 23 461 308 163 52 chr11 90469526 90469926 -58313546 - L3 LINE CR1 -73 1504 1061 47 86 0 0 chr11 90470340 90470457 -58313015 + AT_rich Low_complexity Low_complexity 1 117 0 610 276 82 0 chr11 90470930 90471100 -58312372 + MLT1J2 LTR MaLR 1 184 -266 22 0 0 0 chr11 90471127 90471149 -58312323 + AT_rich Low_complexity Low_complexity 1 22 0 599 280 52 77 chr11 90471154 90471440 -58312032 + MLT1J2 LTR MaLR 172 450 0 295 263 212 0 chr11 90472095 90472213 -58311259 - L2 LINE L2 -4 3309 3167 325 206 20 0 chr11 90472406 90472508 -58310964 + (TA)n Simple_repeat Simple_repeat 2 105 0 524 341 53 83 chr11 90474772 90475244 -58308228 - L2 LINE L2 -1 3271 2814 1402 127 14 0 chr11 90475689 90475910 -58307562 + L1PA13 LINE L1 5928 6151 -12 24 32 0 0 chr11 90477039 90477070 -58306402 + AT_rich Low_complexity Low_complexity 1 31 0 538 324 6 23 chr11 90478202 90478378 -58305094 - MIR3 SINE MIR -6 202 30 2573 296 87 47 chr11 90478452 90479007 -58304465 - L2 LINE L2 -56 3257 2726 243 0 0 0 chr11 90479007 90479034 -58304438 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 2573 296 87 47 chr11 90479034 90479956 -58303516 - L2 LINE L2 -587 2726 1717 535 363 102 30 chr11 90480023 90480594 -58302878 + L2 LINE L2 736 1347 -1967 183 42 0 0 chr11 90480629 90480653 -58302819 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 595 318 127 42 chr11 90480707 90481110 -58302362 + L2 LINE L2 2430 2866 -448 3100 141 16 2 chr11 90481363 90481911 -58301561 - L1MA4 LINE L1 -2 6298 5743 192 314 167 10 chr11 90482325 90482427 -58301045 + L2 LINE L2 3192 3309 -4 43100 31 21 1 chr11 90482755 90488787 -58294685 + L1HS LINE L1 1 6155 0 210 71 0 0 chr11 90488789 90488817 -58294655 + (A)n Simple_repeat Simple_repeat 1 28 0 13798 224 20 9 chr11 90489456 90493701 -58289771 - L1PA15 LINE L1 -3 6162 1864 1866 88 0 4 chr11 90493701 90493952 -58289520 + L1PA7 LINE L1 5901 6150 -4 13798 224 20 9 chr11 90493952 90494065 -58289407 - L1PA15 LINE L1 -4301 1864 1754 719 208 0 0 chr11 90495251 90495381 -58288091 - FLAM_C SINE Alu -2 131 2 394 333 13 27 chr11 90495421 90495571 -58287901 - MER5A DNA MER1_type -1 188 41 276 200 67 0 chr11 90495758 90495818 -58287654 + Tigger3(Golem) DNA MER2_type 2961 3024 -5 531 250 86 40 chr11 90495830 90496154 -58287318 + L1MEd LINE L1 860 1198 -4921 3211 256 37 37 chr11 90496333 90496700 -58286772 - L1MC4a LINE L1 -1439 6369 6003 2311 52 45 0 chr11 90496700 90496989 -58286483 - AluY SINE Alu -9 302 1 3211 256 37 37 chr11 90496989 90497737 -58285735 - L1MC4a LINE L1 -1804 6004 5254 7127 51 1 1 chr11 90497748 90498634 -58284838 + L1PA6 LINE L1 5254 6139 -15 461 297 46 24 chr11 90498666 90499006 -58284466 - L1MC4a LINE L1 -884 5262 4904 2240 88 0 7 chr11 90499100 90499422 -58284050 - AluY SINE Alu 0 320 1 508 273 29 12 chr11 90499449 90499621 -58283851 - L1MC4a LINE L1 -1927 4219 4045 6855 148 40 4 chr11 90499687 90500865 -58282607 - Tigger3b DNA MER2_type 0 1231 12 339 297 48 14 chr11 90501086 90501231 -58282241 - L1MC4 LINE L1 -296 7746 7597 234 361 53 30 chr11 90501375 90501508 -58281964 + L2 LINE L2 3136 3271 -1 306 164 0 0 chr11 90501637 90501692 -58281780 + (CA)n Simple_repeat Simple_repeat 1 55 0 209 367 71 0 chr11 90502070 90502168 -58281304 + MIR SINE MIR 47 151 -111 350 331 57 8 chr11 90503494 90503618 -58279854 - MIR SINE MIR -131 131 2 3375 129 65 0 chr11 90503930 90504182 -58279290 - MER41C LTR ERV1 0 554 320 2485 68 0 3 chr11 90504182 90504490 -58278982 - AluY SINE Alu -4 307 1 3375 129 65 0 chr11 90504490 90504757 -58278715 - MER41C LTR ERV1 -234 320 1 1477 265 97 30 chr11 90505148 90505748 -58277724 + LTR48B LTR ERV1 5 644 0 1054 164 0 0 chr11 90505800 90505965 -58277507 - AluJb SINE Alu -6 306 142 1824 82 0 25 chr11 90505970 90506215 -58277257 - AluSc SINE Alu 0 309 71 2211 115 0 7 chr11 90506215 90506518 -58276954 - AluSc SINE Alu -1 308 6 362 331 51 69 chr11 90506574 90506906 -58276566 + L2 LINE L2 2320 2645 -669 1392 148 29 4 chr11 90506961 90507204 -58276268 + MER4D LTR ERV1 1 249 -654 342 202 160 0 chr11 90507194 90507313 -58276159 + MER4D LTR ERV1 155 292 -611 * 358 224 10 41 chr11 90507313 90507411 -58276061 + LTR29 LTR ERV1 164 258 -364 18244 68 4 0 chr11 90507412 90510597 -58272875 - L1PA6 LINE L1 0 6154 2961 7080 62 0 0 chr11 90510595 90511999 -58271473 + L1PA6 LINE L1 4749 6152 -2 * 192 77 0 0 chr11 90512746 90512772 -58270700 + (CA)n Simple_repeat Simple_repeat 1 26 0 192 359 0 0 chr11 90513198 90513251 -58270221 - L2 LINE L2 -16 3297 3245 23 0 0 0 chr11 90513655 90513678 -58269794 + AT_rich Low_complexity Low_complexity 1 23 0 289 268 0 0 chr11 90514703 90514759 -58268713 + L2 LINE L2 3156 3211 -61 527 65 0 13 chr11 90514769 90514846 -58268626 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 477 0 0 0 chr11 90515244 90515297 -58268175 + (TG)n Simple_repeat Simple_repeat 2 54 0 1606 59 0 0 chr11 90515297 90515484 -58267988 - AluY SINE Alu -109 202 16 225 0 0 0 chr11 90515714 90515739 -58267733 + (TA)n Simple_repeat Simple_repeat 2 26 0 287 0 0 0 chr11 90515740 90515772 -58267700 - L1PA6 LINE L1 -14 6140 6109 532 276 49 65 chr11 90515772 90515957 -58267515 - MIR SINE MIR -74 188 7 204 234 0 21 chr11 90516064 90516111 -58267361 + GA-rich Low_complexity Low_complexity 3 48 0 206 365 43 9 chr11 90516472 90516587 -58266885 - L2 LINE L2 -688 2626 2508 299 352 41 21 chr11 90517458 90517603 -58265869 - L2 LINE L2 -4 3268 3121 186 281 117 47 chr11 90517838 90517966 -58265506 + L3 LINE CR1 1216 1352 -225 634 266 36 21 chr11 90518249 90518441 -58265031 + MIR SINE MIR 66 260 -2 249 250 78 0 chr11 90518822 90518886 -58264586 - MIR SINE MIR -125 137 69 275 281 121 33 chr11 90518913 90519121 -58264351 - MIR SINE MIR 0 262 37 988 88 0 0 chr11 90519142 90519267 -58264205 - AluSg/x SINE Alu -21 291 167 2224 113 30 16 chr11 90519294 90519665 -58263807 - L1PB4 LINE L1 0 6156 5781 2902 187 5 23 chr11 90519665 90519954 -58263518 - L1 LINE L1 -1377 4769 4476 1575 179 54 0 chr11 90519954 90520233 -58263239 - AluJb SINE Alu -18 294 1 2902 187 5 23 chr11 90520233 90520308 -58263164 - L1 LINE L1 -1670 4476 4401 194 0 39 0 chr11 90520308 90520334 -58263138 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2902 187 5 23 chr11 90520334 90520626 -58262846 - L1 LINE L1 -1745 4401 4124 191 317 0 0 chr11 90521661 90521702 -58261770 - L2 LINE L2 -24 3289 3249 1163 235 108 70 chr11 90522195 90522668 -58260804 + LTR16C LTR ERVL 1 491 0 196 366 22 52 chr11 90522941 90523075 -58260397 - MIR3 SINE MIR -6 202 73 4621 61 10 3 chr11 90523473 90524064 -58259408 + L1PA7 LINE L1 5554 6148 -6 23 54 0 0 chr11 90524337 90524374 -58259098 + AT_rich Low_complexity Low_complexity 1 37 0 356 254 72 55 chr11 90524455 90524691 -58258781 - L1ME4a LINE L1 -269 5852 5613 225 292 14 0 chr11 90524719 90524791 -58258681 - L1M1 LINE L1 -731 5571 5499 776 296 32 14 chr11 90525245 90525465 -58258007 + MIR SINE MIR 31 254 -8 623 269 42 42 chr11 90525549 90525765 -58257707 + MIR SINE MIR 47 262 0 361 320 154 33 chr11 90525784 90526206 -58257266 - L1M1 LINE L1 -2265 3881 3409 676 274 116 17 chr11 90526322 90526563 -58256909 + L2 LINE L2 2396 2660 -654 305 318 26 39 chr11 90526576 90526730 -58256742 + LTR16A LTR ERVL 14 165 -285 992 162 79 8 chr11 90526750 90526991 -58256481 + MER61A LTR ERV1 1 343 0 3179 179 43 20 chr11 90526991 90527682 -58255790 + MER61A-int LTR ERV1 1 707 -4510 23057 97 20 14 chr11 90527712 90531486 -58251986 + MER61A-int LTR ERV1 1320 5217 0 1819 146 54 30 chr11 90531486 90531821 -58251651 + MER61A LTR ERV1 1 343 0 730 304 72 4 chr11 90531822 90532059 -58251413 + LTR16A LTR ERVL 182 434 -16 429 394 39 11 chr11 90532113 90532471 -58251001 + HERV16 LTR ERVL 48 415 -4581 987 88 7 68 chr11 90532471 90532619 -58250853 - AluSq/x SINE Alu -165 147 9 272 208 0 13 chr11 90533007 90533084 -58250388 + T-rich Low_complexity Low_complexity 2 77 0 775 120 23 30 chr11 90533377 90533510 -58249962 + FLAM_C SINE Alu 1 132 -1 200 373 93 53 chr11 90534034 90534281 -58249191 - L2 LINE L2 -12 3260 3004 277 318 39 48 chr11 90534332 90534487 -58248985 - MIR3 SINE MIR -67 141 1 675 236 182 5 chr11 90534910 90535130 -58248342 - MIR SINE MIR 0 262 4 275 314 131 15 chr11 90535241 90535378 -58248094 + MIR SINE MIR 1 153 -109 215 254 82 45 chr11 90535509 90535619 -58247853 - L2 LINE L2 -10 3303 3190 480 262 0 0 chr11 90535758 90535899 -58247573 + (TA)n Simple_repeat Simple_repeat 1 141 0 301 312 147 0 chr11 90536345 90536454 -58247018 + MIR SINE MIR 45 169 -93 2206 118 0 3 chr11 90538356 90538660 -58244812 + AluSp SINE Alu 1 303 -10 497 267 138 36 chr11 90539099 90539324 -58244148 - Charlie8 DNA MER1_type -2143 274 27 5529 187 46 23 chr11 90539324 90541468 -58242004 + L1MB7 LINE L1 3986 6175 -9 491 264 54 8 chr11 90542146 90542275 -58241197 - MIR SINE MIR -74 188 54 346 140 0 0 chr11 90542299 90542356 -58241116 + L1M4 LINE L1 4613 4669 -1477 438 289 78 65 chr11 90542450 90542538 -58240934 + MIR SINE MIR 22 107 -155 1802 150 3 14 chr11 90542538 90542851 -58240621 - AluSx SINE Alu 0 310 1 438 289 78 65 chr11 90542851 90542993 -58240479 + MIR SINE MIR 107 256 -6 691 300 30 15 chr11 90544197 90544397 -58239075 - MIR SINE MIR -29 233 31 296 269 192 0 chr11 90544448 90544552 -58238920 + MIR SINE MIR 110 233 -29 248 183 0 17 chr11 90544756 90544816 -58238656 + GA-rich Low_complexity Low_complexity 3 61 0 1959 124 28 3 chr11 90544867 90545157 -58238315 - AluSq SINE Alu -6 307 11 1045 150 10 20 chr11 90545788 90545988 -58237484 + L1PB1 LINE L1 3 200 -6663 14033 191 33 16 chr11 90545988 90551606 -58231866 + L1PB1 LINE L1 634 6518 -349 315 0 0 0 chr11 90551609 90551644 -58231828 + (TG)n Simple_repeat Simple_repeat 2 36 0 427 169 0 0 chr11 90551644 90551715 -58231757 - L1PB1 LINE L1 -299 5852 5782 2169 90 0 10 chr11 90551743 90552044 -58231428 + L1PB1 LINE L1 6564 6861 -6 554 118 8 50 chr11 90552189 90552308 -58231164 + L1MA8 LINE L1 6173 6286 -5 1497 219 53 23 chr11 90552718 90553148 -58230324 + LTR47B LTR ERVL 1 443 0 22617 128 11 12 chr11 90553269 90556885 -58226587 + L1PA6 LINE L1 11 3622 -2524 10482 33 0 0 chr11 90556894 90558921 -58224551 + L1PA3 LINE L1 4129 6155 0 13272 73 2 0 chr11 90558927 90561475 -58221997 + L1PA6 LINE L1 3606 6149 -5 452 365 56 53 chr11 90561662 90562357 -58221115 - L2 LINE L2 -553 2761 2065 792 322 31 4 chr11 90563500 90563755 -58219717 - MIR SINE MIR 0 262 1 1192 282 83 45 chr11 90564659 90565255 -58218217 - L2 LINE L2 0 3313 2696 244 290 58 0 chr11 90565336 90565405 -58218067 + MIR SINE MIR 5 77 -185 1141 306 47 26 chr11 90565513 90565980 -58217492 - LTR16C LTR ERVL -14 477 1 315 305 40 13 chr11 90565987 90566138 -58217334 + L1ME4a LINE L1 5960 6114 -7 21 100 0 0 chr11 90566138 90566208 -58217264 + AT_rich Low_complexity Low_complexity 1 70 0 243 61 0 0 chr11 90566359 90566392 -58217080 + (TTA)n Simple_repeat Simple_repeat 3 35 0 4788 22 0 0 chr11 90566392 90566940 -58216532 - L1PA3 LINE L1 -18 6137 5590 296 328 30 45 chr11 90566950 90567084 -58216388 - MIR SINE MIR -70 192 61 267 294 174 9 chr11 90567150 90567259 -58216213 - MIR3 SINE MIR -50 158 32 346 251 209 26 chr11 90567283 90567474 -58215998 + MIR SINE MIR 16 241 -21 418 239 325 12 chr11 90567690 90567853 -58215619 + MIR SINE MIR 48 261 -1 32 43 0 0 chr11 90568300 90568346 -58215126 + AT_rich Low_complexity Low_complexity 1 46 0 550 228 0 0 chr11 90568354 90568455 -58215017 - MER91B DNA MER1_type 0 190 90 469 248 35 0 chr11 90568474 90568587 -58214885 - MER91B DNA MER1_type -62 128 12 227 324 54 14 chr11 90568641 90568715 -58214757 - L2 LINE L2 -47 3225 3149 220 294 0 0 chr11 90569211 90569279 -58214193 + A-rich Low_complexity Low_complexity 1 68 0 326 322 55 52 chr11 90570072 90570361 -58213111 + MLT1K LTR MaLR 159 448 -140 5651 178 23 2 chr11 90570363 90570704 -58212768 - L1PB1 LINE L1 -8 6859 6526 378 0 0 0 chr11 90570704 90570746 -58212726 + (CA)n Simple_repeat Simple_repeat 1 42 0 234 0 0 0 chr11 90570745 90570771 -58212701 + (TA)n Simple_repeat Simple_repeat 2 27 0 * 5651 178 23 2 chr11 90570746 90572446 -58211026 - L1PB1 LINE L1 -341 6526 4810 2138 191 2 2 chr11 90572430 90572854 -58210618 - L1PB1 LINE L1 -3347 3515 3092 * 6739 70 14 32 chr11 90572847 90574215 -58209257 - L1PA7 LINE L1 -2 6152 4795 25170 116 14 33 chr11 90574215 90579393 -58204079 - L1P3 LINE L1 -1282 5179 1 6963 188 119 94 chr11 90579400 90580578 -58202894 - L1PB1 LINE L1 -3753 3109 1962 1274 189 0 0 chr11 90580578 90580774 -58202698 - AluSx SINE Alu -115 197 2 6963 188 119 94 chr11 90580774 90582425 -58201047 - L1PB1 LINE L1 -4900 1962 6 298 315 35 0 chr11 90582443 90582586 -58200886 + MLT1L LTR MaLR 464 611 -4 305 306 25 103 chr11 90582591 90582768 -58200704 - MIR SINE MIR -90 172 17 813 199 11 11 chr11 90582775 90582956 -58200516 + MLT1A2 LTR MaLR 192 372 -2 219 36 0 0 chr11 90583006 90583034 -58200438 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 300 231 89 65 chr11 90583251 90583420 -58200052 + L1M2 LINE L1 1725 1897 -4952 383 316 25 24 chr11 90583420 90583617 -58199855 + L1ME LINE L1 5462 5637 -484 27938 59 4 0 chr11 90583636 90587336 -58196136 + L1PA4 LINE L1 1 3715 -2431 7276 38 10 1 chr11 90587336 90588353 -58195119 + L1PA4 LINE L1 5133 6155 0 261 309 27 11 chr11 90588362 90588550 -58194922 + L1ME LINE L1 5677 5867 -254 752 179 0 0 chr11 90588857 90588980 -58194492 + AluSg/x SINE Alu 179 301 -9 611 162 0 0 chr11 90589066 90589171 -58194301 - ALR/Alpha Satellite centromeric 0 171 67 2283 171 7 7 chr11 90589172 90589600 -58193872 + L1P3 LINE L1 76 503 -5372 22874 161 13 22 chr11 90589612 90594342 -58189130 + L1P3 LINE L1 794 5500 -961 2583 97 3 3 chr11 90594442 90594814 -58188658 + L1PA8 LINE L1 5801 6172 0 289 336 118 9 chr11 90594952 90595062 -58188410 - L2 LINE L2 -19 3253 3132 205 191 24 0 chr11 90595267 90595309 -58188163 + (TAAAG)n Simple_repeat Simple_repeat 2 44 0 2259 167 44 5 chr11 90595399 90595812 -58187660 - MSTB1 LTR MaLR 0 432 4 25 51 0 0 chr11 90595895 90595934 -58187538 + AT_rich Low_complexity Low_complexity 1 39 0 362 21 0 0 chr11 90595965 90596012 -58187460 + MADE1 DNA Mariner 33 79 -1 2679 193 97 45 chr11 90596012 90596754 -58186718 - L1MD2 LINE L1 -61 6298 5518 308 272 41 89 chr11 90596754 90596841 -58186631 + MIR SINE MIR 48 125 -137 2374 76 0 10 chr11 90596841 90597143 -58186329 - AluY SINE Alu -12 299 1 308 272 41 89 chr11 90597143 90597224 -58186248 + MIR SINE MIR 125 208 -54 697 326 23 5 chr11 90597442 90597663 -58185809 + MIR SINE MIR 12 236 -26 471 288 135 6 chr11 90597701 90597871 -58185601 + MIR SINE MIR 65 256 -6 344 256 244 32 chr11 90599030 90599186 -58184286 - L2 LINE L2 0 3313 3125 1224 318 130 30 chr11 90599186 90600064 -58183408 - L2 LINE L2 0 3313 2348 1455 190 15 68 chr11 90600064 90600428 -58183044 + AluJo SINE Alu 1 347 0 337 270 144 0 chr11 90600864 90600975 -58182497 + MIR3 SINE MIR 78 204 -4 220 306 35 69 chr11 90601037 90601181 -58182291 + MIR SINE MIR 82 220 -42 365 308 30 0 chr11 90601947 90602080 -58181392 + MLT1J2 LTR MaLR 3 139 -311 539 125 0 0 chr11 90602272 90602352 -58181120 + MADE1 DNA Mariner 1 80 0 2214 94 0 7 chr11 90602880 90603178 -58180294 + AluSq SINE Alu 1 296 -17 336 289 39 10 chr11 90603370 90603474 -58179998 - MIR SINE MIR -72 190 84 292 325 187 5 chr11 90603995 90604198 -58179274 - MIR SINE MIR 0 262 23 300 53 0 0 chr11 90604273 90604311 -58179161 + (TG)n Simple_repeat Simple_repeat 2 39 0 26 74 0 0 chr11 90604311 90604365 -58179107 + AT_rich Low_complexity Low_complexity 1 54 0 2132 140 17 61 chr11 90604748 90605156 -58178316 + MLT1B LTR MaLR 1 390 0 249 281 24 0 chr11 90605496 90605578 -58177894 + MIR SINE MIR 73 156 -106 192 343 217 0 chr11 90605720 90605863 -58177609 - L3 LINE CR1 -1316 261 88 2031 162 68 15 chr11 90605894 90606350 -58177122 + LTR65 LTR ERV1 10 489 -180 203 138 0 0 chr11 90606391 90606420 -58177052 + (TCTCCC)n Simple_repeat Simple_repeat 6 34 0 432 274 119 23 chr11 90606420 90606639 -58176833 - L1MEd LINE L1 -2880 3249 3010 1151 291 95 51 chr11 90606641 90607328 -58176144 - L1MEd LINE L1 -4862 1257 493 2242 102 3 7 chr11 90607328 90607621 -58175851 + AluSp SINE Alu 1 292 -21 1151 291 95 51 chr11 90607621 90608135 -58175337 - L1MEd LINE L1 -5626 493 3 1063 328 150 20 chr11 90608137 90608935 -58174537 + L2 LINE L2 1826 2727 -587 474 158 24 0 chr11 90608938 90609020 -58174452 + Tigger1 DNA MER2_type 2326 2409 -9 450 295 12 58 chr11 90609031 90609204 -58174268 + MIR SINE MIR 82 246 -16 686 161 16 16 chr11 90609206 90609330 -58174142 - FLAM_C SINE Alu -19 124 1 21 36 0 0 chr11 90609331 90609359 -58174113 + AT_rich Low_complexity Low_complexity 1 28 0 28 48 0 0 chr11 90609570 90609612 -58173860 + AT_rich Low_complexity Low_complexity 1 42 0 2339 127 57 5 chr11 90610783 90611184 -58172288 - L1PA15 LINE L1 0 7603 7182 16013 223 48 17 chr11 90611184 90617677 -58165795 - L1PA15 LINE L1 -643 6960 1 7373 38 3 0 chr11 90618773 90619819 -58163653 + L1PA4 LINE L1 5107 6155 0 1051 249 27 39 chr11 90619828 90620165 -58163307 + MLT1B LTR MaLR 58 390 0 1321 219 44 15 chr11 90620506 90620780 -58162692 + AluJo SINE Alu 5 286 -26 291 114 0 0 chr11 90620985 90621029 -58162443 + (CA)n Simple_repeat Simple_repeat 2 45 0 1588 209 76 67 chr11 90621220 90621770 -58161702 - LTR8A LTR ERV1 0 727 173 2209 129 0 3 chr11 90621798 90622107 -58161365 + AluSg SINE Alu 1 308 -2 766 213 24 6 chr11 90622132 90622296 -58161176 - AluJo SINE Alu -17 295 129 22037 40 1 2 chr11 90622296 90625802 -58157670 - L1PA4 LINE L1 -6 6149 2645 736 201 0 14 chr11 90625802 90625941 -58157531 - AluJo SINE Alu -175 137 1 786 314 57 0 chr11 90626027 90626275 -58157197 + L2 LINE L2 2396 2657 -657 878 246 109 7 chr11 90626838 90627114 -58156358 + L2 LINE L2 2673 2976 -338 1867 141 23 39 chr11 90627424 90627730 -58155742 + AluSx SINE Alu 1 301 -11 260 243 132 26 chr11 90627844 90627996 -58155476 - LTR68 LTR ERV1 -284 456 289 238 289 96 39 chr11 90628132 90628288 -58155184 - LTR68 LTR ERV1 -560 180 16 377 273 81 48 chr11 90628306 90628811 -58154661 + L1ME3 LINE L1 695 1216 -4903 1866 237 69 81 chr11 90628975 90629280 -58154192 + MER52A LTR ERV1 664 971 -784 2331 90 7 0 chr11 90629280 90629581 -58153891 - AluSc SINE Alu -6 303 1 1866 237 69 81 chr11 90629581 90630315 -58153157 + MER52A LTR ERV1 971 1755 0 22 0 0 0 chr11 90630456 90630478 -58152994 + AT_rich Low_complexity Low_complexity 1 22 0 408 327 70 3 chr11 90630933 90631306 -58152166 + L1ME3 LINE L1 2093 2490 -3639 287 228 46 119 chr11 90631616 90631835 -58151637 + MER3 DNA MER1_type 7 209 0 300 319 113 6 chr11 90631839 90631999 -58151473 + L1ME3 LINE L1 2966 3142 -2987 411 291 78 57 chr11 90632155 90632385 -58151087 + L1ME3 LINE L1 3418 3652 -2477 5026 238 56 19 chr11 90632635 90633871 -58149601 - L1M4 LINE L1 -1099 5047 3746 1907 146 3 10 chr11 90633871 90634173 -58149299 - AluSq SINE Alu -13 300 1 5026 238 56 19 chr11 90634173 90634425 -58149047 - L1M4 LINE L1 -2400 3746 3505 1578 183 32 7 chr11 90635020 90635186 -58148286 - AluJo SINE Alu -18 294 117 207 0 0 0 chr11 90635186 90635209 -58148263 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1578 183 32 7 chr11 90635209 90635327 -58148145 - AluJo SINE Alu -195 117 3 545 253 90 12 chr11 90635553 90635719 -58147753 + MIR SINE MIR 47 225 -37 239 299 96 29 chr11 90635868 90636149 -58147323 + L1ME3 LINE L1 4957 5256 -873 1739 197 46 3 chr11 90636159 90636509 -58146963 - MLT1A1 LTR MaLR 0 365 1 1230 276 51 22 chr11 90636593 90636669 -58146803 + L1ME3 LINE L1 5367 5439 -706 1988 136 27 83 chr11 90636669 90637080 -58146392 - MLT1B LTR MaLR 0 390 3 1230 276 51 22 chr11 90637080 90637551 -58145921 + L1ME3 LINE L1 5439 5930 -215 300 221 35 47 chr11 90637981 90638067 -58145405 + MIR SINE MIR 57 141 -121 3361 239 143 51 chr11 90638290 90639914 -58143558 + L1M3e LINE L1 463 2236 -5253 1852 213 24 80 chr11 90640040 90640669 -58142803 + L1M3e LINE L1 2581 3174 -4391 1847 102 0 0 chr11 90640669 90640904 -58142568 + AluSq SINE Alu 1 235 -78 231 292 0 0 chr11 90641202 90641267 -58142205 + C-rich Low_complexity Low_complexity 1 65 0 7695 27 0 0 chr11 90641267 90642374 -58141098 + L1PA3 LINE L1 5049 6155 0 9971 226 31 63 chr11 90642431 90644883 -58138589 + L1M2 LINE L1 1 2296 -4552 2102 100 8 118 chr11 90644883 90645119 -58138353 + THE1A LTR MaLR 1 177 -178 2062 137 0 0 chr11 90645119 90645411 -58138061 + AluSg SINE Alu 1 292 -18 2102 100 8 118 chr11 90645411 90645573 -58137899 + THE1A LTR MaLR 177 355 0 9971 226 31 63 chr11 90645573 90646856 -58136616 + L1M2 LINE L1 2296 3618 -3230 25 0 0 0 chr11 90646905 90646930 -58136542 + AT_rich Low_complexity Low_complexity 1 25 0 1397 224 4 4 chr11 90646947 90647219 -58136253 + AluJo SINE Alu 32 303 -9 7577 184 44 26 chr11 90647224 90649077 -58134395 + L1M2 LINE L1 3632 5518 -1330 743 181 59 29 chr11 90649064 90649240 -58134232 + L1MA8 LINE L1 6078 6262 -29 * 444 68 82 41 chr11 90649240 90649313 -58134159 + MADE1 DNA Mariner 4 79 -1 743 181 59 29 chr11 90649313 90649340 -58134132 + L1MA8 LINE L1 6262 6287 -4 445 299 86 17 chr11 90650292 90650466 -58133006 + L2 LINE L2 2895 3080 -233 775 215 12 29 chr11 90650509 90650681 -58132791 + AluJo SINE Alu 115 283 -29 567 208 0 19 chr11 90650694 90650853 -58132619 + GA-rich Low_complexity Low_complexity 1 156 0 833 229 43 122 chr11 90650885 90651230 -58132242 - MLT1A2 LTR MaLR -56 318 1 714 297 78 3 chr11 90651985 90652345 -58131127 + L1ME4a LINE L1 5269 5655 -515 4006 72 10 0 chr11 90652345 90652934 -58130538 + L1P3 LINE L1 5193 5786 -386 26410 131 11 19 chr11 90652943 90657276 -58126196 + L1PA7 LINE L1 11 4309 -1837 2624 7 0 0 chr11 90657270 90657565 -58125907 + L1HS LINE L1 5861 6155 0 * 207 0 0 0 chr11 90657568 90657591 -58125881 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 7429 97 3 6 chr11 90657593 90659445 -58124027 + L1PA7 LINE L1 4300 6154 0 3080 62 2 10 chr11 90659445 90659842 -58123630 + L1PA8 LINE L1 5769 6169 -3 718 273 50 10 chr11 90659842 90660142 -58123330 + L1ME4a LINE L1 5645 5956 -214 376 295 212 5 chr11 90660274 90660467 -58123005 + L2 LINE L2 2461 2693 -621 1095 140 109 5 chr11 90660469 90660662 -58122810 + MSTC LTR MaLR 1 213 -215 1705 181 4 4 chr11 90660662 90660943 -58122529 + AluJo SINE Alu 3 283 -29 195 42 0 0 chr11 90660943 90660967 -58122505 + (GGA)n Simple_repeat Simple_repeat 3 26 0 31806 69 5 4 chr11 90660972 90665250 -58118222 - L1P LINE L1 -743 5403 1125 211 70 163 0 chr11 90665252 90665295 -58118177 + L2 LINE L2 2687 2736 -578 * 1140 264 150 22 chr11 90665280 90665686 -58117786 + L2 LINE L2 2852 3309 -4 281 169 0 0 chr11 90665736 90665801 -58117671 + L1ME4a LINE L1 6054 6118 -3 228 302 0 0 chr11 90665828 90665881 -58117591 + L2 LINE L2 3251 3303 -10 356 283 63 58 chr11 90666427 90666618 -58116854 + L3 LINE CR1 1091 1282 -295 388 247 12 12 chr11 90666666 90666751 -58116721 - L2 LINE L2 0 3313 3229 707 149 0 0 chr11 90666948 90667055 -58116417 + U6 snRNA snRNA 1 107 0 7622 27 1 2 chr11 90667311 90668393 -58115079 + L1PA4 LINE L1 5072 6152 -3 390 312 29 22 chr11 90668497 90668635 -58114837 + L3 LINE CR1 1377 1515 -62 1264 127 39 65 chr11 90668731 90668960 -58114512 - AluJo SINE Alu -6 306 84 4052 140 13 9 chr11 90669680 90670371 -58113101 + L1PA16 LINE L1 5471 6164 -2 430 308 66 43 chr11 90671140 90671351 -58112121 - MIR SINE MIR 0 262 47 373 233 23 153 chr11 90672375 90672551 -58110921 + MIR SINE MIR 14 166 -96 6231 211 38 10 chr11 90673097 90674612 -58108860 + L1 LINE L1 2773 4329 -1817 896 143 87 37 chr11 90674612 90674773 -58108699 - AluJo SINE Alu -6 306 138 2211 106 50 36 chr11 90674773 90675130 -58108342 + THE1B LTR MaLR 1 362 -2 11420 96 6 11 chr11 90675132 90676720 -58106752 + THE1B-int LTR MaLR 1 1580 0 1760 133 146 19 chr11 90676720 90677043 -58106429 + THE1B LTR MaLR 1 364 0 684 175 7 36 chr11 90677053 90677190 -58106282 - AluJo SINE Alu -169 133 1 4226 185 15 6 chr11 90677190 90677526 -58105946 + L1 LINE L1 4323 4654 -1492 234 0 0 0 chr11 90677526 90677552 -58105920 + (CA)n Simple_repeat Simple_repeat 1 26 0 4226 185 15 6 chr11 90677552 90678122 -58105350 + L1 LINE L1 4654 5238 -908 2157 128 18 47 chr11 90678123 90678505 -58104967 + THE1C LTR MaLR 1 371 -4 9462 132 46 9 chr11 90678505 90680024 -58103448 + THE1C-int LTR MaLR 4 1580 0 1463 143 4 50 chr11 90680024 90680304 -58103168 + THE1B LTR MaLR 1 267 -108 6592 113 4 9 chr11 90680334 90681411 -58102061 + L1MA3 LINE L1 5235 6305 0 29 28 0 0 chr11 90681411 90681447 -58102025 + AT_rich Low_complexity Low_complexity 1 36 0 370 229 39 98 chr11 90681454 90681504 -58101968 + L1ME3 LINE L1 5862 5913 -249 1721 199 0 3 chr11 90681504 90681800 -58101672 - AluJb SINE Alu -13 299 5 370 229 39 98 chr11 90681800 90681954 -58101518 + L1ME3 LINE L1 5913 6054 -108 204 114 0 29 chr11 90682010 90682045 -58101427 + (TTCC)n Simple_repeat Simple_repeat 4 37 0 636 286 22 42 chr11 90682135 90682492 -58100980 + L1ME3A LINE L1 3839 4188 -1958 2114 275 30 5 chr11 90682560 90683225 -58100247 + L1MEc LINE L1 35 716 -5680 1080 239 58 5 chr11 90683230 90683630 -58099842 + L1MEc LINE L1 1412 1807 -910 802 154 14 0 chr11 90683632 90683775 -58099697 + MLT2B1 LTR ERVL 3 147 -373 305 227 0 2 chr11 90684046 90684139 -58099333 + L1ME3A LINE L1 5307 5398 -776 6705 80 29 4 chr11 90684189 90685435 -58098037 - L1PA8 LINE L1 0 6172 4915 515 226 255 19 chr11 90685435 90685643 -58097829 + L1ME3A LINE L1 5385 5641 -521 737 261 6 0 chr11 90685697 90685862 -58097610 + MER45A DNA AcHobo 13 178 0 533 230 46 0 chr11 90685926 90686078 -58097394 + L1ME3A LINE L1 5725 5883 -287 446 223 33 92 chr11 90686205 90686389 -58097083 + MLT1I LTR MaLR 231 403 -6 2235 115 3 22 chr11 90686994 90687306 -58096166 - AluSp SINE Alu -7 306 1 2249 119 0 6 chr11 90687320 90687631 -58095841 - AluSg SINE Alu -1 309 1 25 0 0 0 chr11 90688014 90688039 -58095433 + AT_rich Low_complexity Low_complexity 1 25 0 472 282 8 17 chr11 90688850 90688991 -58094481 - MIR SINE MIR -62 146 50 2110 130 0 0 chr11 90690013 90690334 -58093138 - AluSx SINE Alu 0 321 1 292 129 14 14 chr11 90690418 90690488 -58092984 + (TA)n Simple_repeat Simple_repeat 1 70 0 959 151 0 6 chr11 90690488 90690654 -58092818 - L1P4 LINE L1 -343 5823 5659 1435 158 153 0 chr11 90690989 90691243 -58092229 - AluSx SINE Alu -3 309 17 180 0 0 0 chr11 90691285 90691305 -58092167 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 4406 143 19 8 chr11 90691362 90692101 -58091371 - L1PA16 LINE L1 -16 6150 5404 34 0 0 0 chr11 90692382 90692416 -58091056 + AT_rich Low_complexity Low_complexity 1 34 0 2391 129 15 43 chr11 90692511 90692947 -58090525 + L1MB7 LINE L1 5508 5932 -252 1942 145 7 3 chr11 90692947 90693250 -58090222 + AluJb SINE Alu 3 306 -6 2391 129 15 43 chr11 90693250 90693278 -58090194 + L1MB7 LINE L1 5932 5959 -225 575 204 126 30 chr11 90693279 90693446 -58090026 + MER39 LTR ERV1 1 183 -524 894 229 34 48 chr11 90693456 90693748 -58089724 + pTR5 LTR ERV1 741 1028 -1410 3974 126 76 110 chr11 90693934 90694789 -58088683 + LTR12 LTR ERV1 1 826 0 759 65 72 109 chr11 90694789 90694846 -58088626 + LTR12 LTR ERV1 582 640 -74 2427 80 0 6 chr11 90694846 90695159 -58088313 + AluY SINE Alu 1 311 0 759 65 72 109 chr11 90695159 90695239 -58088233 + LTR12 LTR ERV1 640 714 0 1459 148 43 149 chr11 90695239 90695324 -58088148 + MER39 LTR ERV1 222 314 -228 4984 102 6 0 chr11 90695324 90696013 -58087459 + L1PA10 LINE L1 5465 6157 -11 1459 148 43 149 chr11 90696013 90696471 -58087001 + MER39 LTR ERV1 314 540 -2 862 207 10 16 chr11 90696472 90696665 -58086807 + L1MB7 LINE L1 5956 6147 -37 252 98 0 0 chr11 90696709 90696750 -58086722 + L1MA1 LINE L1 6257 6297 -5 3663 163 23 49 chr11 90697130 90697927 -58085545 + LTR1 LTR ERV1 10 785 0 250 294 22 11 chr11 90698018 90698110 -58085362 + LTR23 LTR ERV1 332 424 -13 437 261 50 0 chr11 90698356 90698475 -58084997 - MIR3 SINE MIR -11 197 73 33 56 0 0 chr11 90698475 90698529 -58084943 + AT_rich Low_complexity Low_complexity 1 54 0 228 174 0 0 chr11 90699650 90699696 -58083776 + MIR3 SINE MIR 163 208 0 30311 104 12 57 chr11 90700002 90706443 -58077029 - L1PA7 LINE L1 -2 6152 12 3685 117 17 3 chr11 90706552 90707134 -58076338 + MER41B LTR ERV1 2 591 -44 760 241 273 16 chr11 90707134 90707504 -58075968 + LTR28 LTR ERV1 508 972 -48 316 277 58 22 chr11 90707531 90707668 -58075804 + LTR28 LTR ERV1 879 1020 0 32 57 0 0 chr11 90708540 90708593 -58074879 + AT_rich Low_complexity Low_complexity 1 53 0 332 314 44 50 chr11 90708794 90708953 -58074519 + L1MEd LINE L1 49 206 -5913 186 43 0 0 chr11 90709096 90709119 -58074353 + (A)n Simple_repeat Simple_repeat 1 23 0 580 262 104 53 chr11 90709235 90710058 -58073414 + L1MEd LINE L1 527 1374 -4755 631 134 76 89 chr11 90710083 90710240 -58073232 - L2 LINE L2 -1 3312 3158 468 289 21 47 chr11 90710261 90710451 -58073021 - L2 LINE L2 -1 3312 3128 318 172 0 17 chr11 90710463 90710521 -58072951 - AluY SINE Alu -143 158 102 762 294 92 45 chr11 90710947 90711392 -58072080 + L1MEd LINE L1 2902 3367 -2762 2077 170 57 114 chr11 90711443 90712179 -58071293 + LTR8A LTR ERV1 34 727 0 237 301 9 9 chr11 90712189 90712302 -58071170 + L1MEd LINE L1 3410 3522 -2607 2449 195 180 10 chr11 90712430 90713103 -58070369 + LTR48 LTR ERV1 1 787 0 5453 166 19 9 chr11 90713938 90715958 -58067514 + L1PA16 LINE L1 4125 6158 -8 2312 85 3 3 chr11 90716161 90716454 -58067018 - AluSc SINE Alu -16 293 1 34 24 0 0 chr11 90716552 90716593 -58066879 + AT_rich Low_complexity Low_complexity 1 41 0 353 39 20 0 chr11 90716811 90716862 -58066610 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 2639 217 68 14 chr11 90717020 90717724 -58065748 + L1ME1 LINE L1 5420 6161 -5 1930 182 0 10 chr11 90717751 90718058 -58065414 + AluJb SINE Alu 1 304 -8 1537 152 107 28 chr11 90718075 90718364 -58065108 + AluJo SINE Alu 1 312 0 569 240 39 22 chr11 90718820 90718999 -58064473 - MIR SINE MIR -9 253 72 22 0 0 0 chr11 90719302 90719324 -58064148 + AT_rich Low_complexity Low_complexity 1 22 0 473 287 40 49 chr11 90719383 90719630 -58063842 - MIR SINE MIR -12 250 6 183 80 0 0 chr11 90719729 90719754 -58063718 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 403 261 34 17 chr11 90720073 90720192 -58063280 + MIR SINE MIR 4 124 -138 438 220 13 13 chr11 90720196 90720346 -58063126 - L1MA10 LINE L1 -1 6333 6184 2286 212 78 23 chr11 90720428 90722339 -58061133 - L1ME1 LINE L1 -134 6032 4017 6741 204 46 18 chr11 90722346 90723418 -58060054 - L1MB7 LINE L1 -20 6662 5622 1441 210 76 12 chr11 90723418 90723761 -58059711 - MLT1A1 LTR MaLR 0 365 1 6741 204 46 18 chr11 90723761 90725016 -58058456 - L1MB7 LINE L1 -1060 5622 4404 2125 137 0 0 chr11 90725016 90725316 -58058156 - AluSq SINE Alu -13 300 1 6741 204 46 18 chr11 90725316 90726022 -58057450 - L1MB7 LINE L1 -2278 4404 3524 2235 132 0 0 chr11 90726022 90726333 -58057139 - AluSx SINE Alu -1 311 1 6741 204 46 18 chr11 90726333 90726609 -58056863 - L1MB7 LINE L1 -3158 3524 3257 1811 110 24 46 chr11 90726605 90726933 -58056539 + L1PA16 LINE L1 5376 5696 -470 * 749 172 188 32 chr11 90726943 90727129 -58056343 + L1PA16 LINE L1 5943 6157 -9 634 164 117 0 chr11 90727146 90727274 -58056198 + Charlie1 DNA MER1_type 1953 2095 -666 696 199 7 0 chr11 90727278 90727424 -58056048 - L1MB7 LINE L1 -3386 3258 3112 5055 215 61 51 chr11 90727435 90729207 -58054265 - L1MB7 LINE L1 -4833 1709 14 214 269 120 19 chr11 90729290 90729398 -58054074 + MIR SINE MIR 144 262 0 2348 166 29 17 chr11 90729845 90730266 -58053206 + MSTB LTR MaLR 1 426 0 334 253 51 63 chr11 90730592 90730750 -58052722 + LTR67 LTR ERVL 395 550 -7 22 0 0 0 chr11 90731005 90731027 -58052445 + AT_rich Low_complexity Low_complexity 1 22 0 1308 290 113 50 chr11 90731211 90731511 -58051961 + L2 LINE L2 2186 2466 -847 2294 153 68 2 chr11 90731511 90731910 -58051562 + MSTB LTR MaLR 2 426 0 1308 290 113 50 chr11 90731910 90732255 -58051217 + L2 LINE L2 2466 2788 -525 1909 171 0 13 chr11 90732255 90732560 -58050912 + AluJo SINE Alu 1 301 -11 1308 290 113 50 chr11 90732560 90732944 -58050528 + L2 LINE L2 2788 3301 -12 2365 274 137 38 chr11 90733630 90734725 -58048747 - L2 LINE L2 -1 3312 2046 5956 108 13 6 chr11 90734725 90736408 -58047064 + L1PA13 LINE L1 4480 6163 0 2365 274 137 38 chr11 90736408 90736696 -58046776 - L2 LINE L2 -1267 2046 1788 940 199 0 0 chr11 90736696 90736852 -58046620 - AluSg/x SINE Alu -20 290 135 2388 105 30 28 chr11 90736911 90737274 -58046198 + THE1B LTR MaLR 1 364 0 731 278 0 0 chr11 90737274 90737447 -58046025 - LTR33 LTR ERVL -241 280 108 1007 240 8 26 chr11 90737502 90737769 -58045703 - MIR SINE MIR 0 262 1 1154 261 49 13 chr11 90737893 90738332 -58045140 + LTR33 LTR ERVL 12 488 -33 1849 123 17 40 chr11 90738332 90738662 -58044810 + AluSx SINE Alu 1 312 0 1154 261 49 13 chr11 90738662 90738696 -58044776 + LTR33 LTR ERVL 488 519 -2 1660 306 118 20 chr11 90738703 90739457 -58044015 - L2 LINE L2 -1759 1555 728 1047 126 0 0 chr11 90739543 90739707 -58043765 + FLAM_C SINE Alu 1 164 0 31 44 0 0 chr11 90739739 90739784 -58043688 + AT_rich Low_complexity Low_complexity 1 45 0 40 24 0 0 chr11 90740050 90740092 -58043380 + AT_rich Low_complexity Low_complexity 1 42 0 29 0 0 0 chr11 90740136 90740165 -58043307 + AT_rich Low_complexity Low_complexity 1 29 0 234 281 44 44 chr11 90740304 90740418 -58043054 - L3 LINE CR1 -364 1213 1100 1482 162 0 4 chr11 90740570 90740823 -58042649 + AluY SINE Alu 60 311 0 372 22 0 0 chr11 90741199 90741244 -58042228 + (CA)n Simple_repeat Simple_repeat 2 46 0 269 355 176 29 chr11 90741246 90741491 -58041981 - L2 LINE L2 -32 3281 3001 2223 97 0 4 chr11 90741589 90741900 -58041572 - AluSg SINE Alu 0 312 3 2428 72 7 0 chr11 90742093 90742397 -58041075 - AluY SINE Alu -5 306 1 958 224 4 18 chr11 90742574 90742802 -58040670 + MLT1B LTR MaLR 4 228 -162 2371 133 6 0 chr11 90742810 90743170 -58040302 - THE1B LTR MaLR 0 364 3 8062 103 50 1 chr11 90743172 90744381 -58039091 - THE1B-int LTR MaLR 0 1580 313 1085 223 127 16 chr11 90744381 90744704 -58038768 - MLT1F LTR MaLR -183 359 1 14164 118 34 47 chr11 90745105 90747555 -58035917 - Tigger1 DNA MER2_type 0 2418 1 22 0 0 0 chr11 90747857 90747879 -58035593 + AT_rich Low_complexity Low_complexity 1 22 0 366 302 22 22 chr11 90748073 90748212 -58035260 + L2 LINE L2 398 536 -2778 1031 266 84 99 chr11 90748251 90748432 -58035040 - L1MC4 LINE L1 -64 7897 7715 1850 157 0 26 chr11 90748432 90748738 -58034734 - AluJb SINE Alu -11 301 4 1031 266 84 99 chr11 90748738 90748750 -58034722 - L1MC4 LINE L1 -246 7715 7704 2264 125 0 3 chr11 90748750 90749062 -58034410 - AluSx SINE Alu -1 311 1 1031 266 84 99 chr11 90749062 90750173 -58033299 - L1MC4 LINE L1 -257 7704 6611 25 75 0 0 chr11 90750204 90750257 -58033215 + AT_rich Low_complexity Low_complexity 1 53 0 187 304 152 13 chr11 90750595 90750674 -58032798 - MIR SINE MIR -170 92 3 220 191 11 90 chr11 90750682 90750771 -58032701 - L2 LINE L2 -3015 299 218 429 264 74 8 chr11 90751113 90751234 -58032238 + L2 LINE L2 3182 3310 -3 638 253 113 50 chr11 90751717 90752196 -58031276 - L1MC4a LINE L1 -1617 6191 5683 519 303 46 8 chr11 90752671 90752912 -58030560 + MLT1L LTR MaLR 7 256 -359 22 0 0 0 chr11 90753134 90753156 -58030316 + AT_rich Low_complexity Low_complexity 1 22 0 432 248 8 8 chr11 90753800 90753921 -58029551 - MER45A DNA AcHobo 0 178 58 349 314 50 14 chr11 90753943 90754083 -58029389 + MIR SINE MIR 47 191 -71 378 228 84 96 chr11 90754318 90754756 -58028716 + MER115 DNA AcHobo 1 433 -260 189 0 0 0 chr11 90755138 90755159 -58028313 + (TTA)n Simple_repeat Simple_repeat 2 22 0 319 314 126 11 chr11 90755285 90755460 -58028012 + MIR SINE MIR 54 248 -14 394 301 90 23 chr11 90759162 90759295 -58024177 + L2 LINE L2 3169 3310 -3 225 0 0 0 chr11 90759347 90759372 -58024100 + (T)n Simple_repeat Simple_repeat 1 25 0 2594 43 0 7 chr11 90760969 90761274 -58022198 + AluY SINE Alu 1 303 -8 607 287 114 16 chr11 90761345 90761732 -58021740 + L1ME4a LINE L1 5512 5936 -185 1025 159 25 12 chr11 90762357 90762520 -58020952 - AluJo SINE Alu -19 293 129 27 73 0 0 chr11 90762553 90762608 -58020864 + AT_rich Low_complexity Low_complexity 1 55 0 274 295 181 0 chr11 90762667 90762772 -58020700 - L2 LINE L2 0 3272 3149 500 291 90 51 chr11 90762959 90763193 -58020279 - MIR SINE MIR -6 256 14 201 371 57 0 chr11 90763265 90763335 -58020137 - L2 LINE L2 -92 3180 3107 327 321 181 40 chr11 90763665 90764113 -58019359 - L2 LINE L2 -2108 1206 696 645 259 199 0 chr11 90764193 90764286 -58019186 - MIR SINE MIR -1 261 188 303 28 0 0 chr11 90764286 90764322 -58019150 + (TTTC)n Simple_repeat Simple_repeat 2 37 0 645 259 199 0 chr11 90764322 90764444 -58019028 - MIR SINE MIR -74 188 3 239 295 89 27 chr11 90764499 90764611 -58018861 - L2 LINE L2 -2834 480 362 315 270 105 20 chr11 90765203 90765355 -58018117 + MLT1K LTR MaLR 144 308 -280 1924 158 0 10 chr11 90765692 90765984 -58017488 - AluJo SINE Alu -23 289 1 1890 108 0 8 chr11 90766462 90766722 -58016750 + AluSg SINE Alu 39 296 -14 22 35 0 0 chr11 90767044 90767073 -58016399 + AT_rich Low_complexity Low_complexity 1 29 0 326 301 48 63 chr11 90768419 90768625 -58014847 + L3 LINE CR1 1341 1543 -34 438 213 240 22 chr11 90768653 90768836 -58014636 + MIR SINE MIR 40 262 0 697 304 61 4 chr11 90769532 90769762 -58013710 + MIR SINE MIR 20 262 0 777 137 0 0 chr11 90770185 90770302 -58013170 - AluJo SINE Alu -189 123 7 1992 140 3 7 chr11 90771514 90771807 -58011665 - AluJb SINE Alu -20 292 1 292 365 65 77 chr11 90771967 90772320 -58011152 - L2 LINE L2 -2 3270 2922 1055 175 9 31 chr11 90773093 90773321 -58010151 + L1MB2 LINE L1 5949 6171 0 2053 112 100 9 chr11 90774106 90774437 -58009035 - MER46B DNA MER2_type 0 236 1 183 250 114 0 chr11 90774597 90774641 -58008831 + MER5A DNA MER1_type 140 188 -1 564 211 94 50 chr11 90775044 90775159 -58008313 + MER5A DNA MER1_type 1 128 -61 1636 184 31 14 chr11 90775159 90775453 -58008019 - AluJb SINE Alu -13 299 1 564 211 94 50 chr11 90775453 90775517 -58007955 + MER5A DNA MER1_type 128 188 -1 810 243 74 38 chr11 90775983 90776671 -58006801 + L1MEd LINE L1 1190 1982 -4444 976 280 109 16 chr11 90776690 90777610 -58005862 + L1MEd LINE L1 2086 3052 -3374 597 145 65 16 chr11 90778383 90778507 -58004965 - L1MC1 LINE L1 0 6333 6204 25 0 0 0 chr11 90778515 90778540 -58004932 + AT_rich Low_complexity Low_complexity 1 25 0 303 269 100 31 chr11 90779123 90779253 -58004219 - MIR SINE MIR -2 260 122 306 322 179 32 chr11 90779279 90779769 -58003703 - L2 LINE L2 -56 3257 2676 2166 108 3 3 chr11 90779788 90780111 -58003361 - AluSq SINE Alu 0 313 1 353 328 46 8 chr11 90780112 90780243 -58003229 + MIR SINE MIR 79 214 -48 1895 101 30 92 chr11 90780794 90780945 -58002527 + AluSp SINE Alu 1 123 -190 234 0 0 0 chr11 90780945 90780971 -58002501 + (CA)n Simple_repeat Simple_repeat 1 26 0 1895 101 30 92 chr11 90780971 90781147 -58002325 + AluSp SINE Alu 123 308 -5 404 276 9 9 chr11 90781698 90781803 -58001669 + MIR3 SINE MIR 100 204 -4 2620 33 23 0 chr11 90781806 90782108 -58001364 - AluY SINE Alu -2 309 1 2353 105 0 0 chr11 90782649 90782953 -58000519 - AluSx SINE Alu -8 304 1 211 308 0 22 chr11 90783433 90783524 -57999948 + (TA)n Simple_repeat Simple_repeat 1 89 0 22 0 0 0 chr11 90784503 90784525 -57998947 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr11 90784725 90784761 -57998711 + AT_rich Low_complexity Low_complexity 1 36 0 282 56 0 0 chr11 90785660 90785696 -57997776 + (CA)n Simple_repeat Simple_repeat 2 37 0 1955 157 0 7 chr11 90785696 90785989 -57997483 - AluSx SINE Alu -21 291 1 489 326 163 5 chr11 90786297 90786512 -57996960 - MIR SINE MIR 0 262 14 644 276 84 22 chr11 90786520 90786745 -57996727 + MIR SINE MIR 20 258 -4 688 220 176 22 chr11 90786769 90786996 -57996476 + MIR SINE MIR 1 262 0 29 47 0 0 chr11 90788009 90788052 -57995420 + AT_rich Low_complexity Low_complexity 1 43 0 223 234 78 16 chr11 90788306 90788370 -57995102 + MIR SINE MIR 185 252 -10 375 23 0 0 chr11 90789663 90789707 -57993765 + (CA)n Simple_repeat Simple_repeat 1 44 0 22 0 0 0 chr11 90790219 90790241 -57993231 + AT_rich Low_complexity Low_complexity 1 22 0 436 289 35 61 chr11 90790753 90790950 -57992522 + MIR SINE MIR 1 146 -62 573 255 163 16 chr11 90792519 90792703 -57990769 + L3 LINE CR1 1364 1574 -3 594 220 52 23 chr11 90793343 90793516 -57989956 + MIR SINE MIR 81 258 -4 362 205 77 0 chr11 90794587 90794665 -57988807 + L2 LINE L2 3230 3313 0 2382 66 16 3 chr11 90795145 90795448 -57988024 - AluY SINE Alu -4 307 1 42 77 0 0 chr11 90795653 90795744 -57987728 + AT_rich Low_complexity Low_complexity 1 91 0 31 0 0 0 chr11 90796732 90796763 -57986709 + AT_rich Low_complexity Low_complexity 1 31 0 31 0 0 0 chr11 90796831 90796862 -57986610 + AT_rich Low_complexity Low_complexity 1 31 0 2317 110 0 0 chr11 90801259 90801560 -57981912 - AluSg SINE Alu -9 301 1 21279 82 12 21 chr11 90801936 90805729 -57977743 + L1PA7 LINE L1 2358 6153 -1 2916 9 0 0 chr11 90806559 90806877 -57976595 - AluYb8 SINE Alu 0 318 1 1879 148 19 0 chr11 90807891 90808208 -57975264 + L1MC1 LINE L1 6011 6333 0 2000 144 0 10 chr11 90808453 90808765 -57974707 + AluSx SINE Alu 1 309 -3 193 266 24 81 chr11 90809783 90809907 -57973565 - MIR3 SINE MIR -5 203 87 267 200 143 43 chr11 90812106 90812176 -57971296 + L2 LINE L2 3195 3271 -1 189 0 0 0 chr11 90812232 90812253 -57971219 + (T)n Simple_repeat Simple_repeat 1 21 0 579 265 31 56 chr11 90812631 90812827 -57970645 - MIR SINE MIR -70 192 2 238 287 191 0 chr11 90814132 90814226 -57969246 + L2 LINE L2 3141 3252 -20 833 206 164 42 chr11 90815480 90815767 -57967705 + MER5C DNA MER1_type 3 324 0 201 193 325 0 chr11 90816516 90816599 -57966873 - MIR SINE MIR -71 191 82 379 339 16 38 chr11 90817172 90817358 -57966114 - MIR SINE MIR -12 250 69 466 323 115 9 chr11 90818015 90818241 -57965231 - MIR SINE MIR -12 250 1 200 299 26 26 chr11 90819127 90819204 -57964268 - L2 LINE L2 -6 3266 3190 446 264 195 0 chr11 90819396 90819555 -57963917 - MIR SINE MIR -2 260 71 187 261 77 85 chr11 90819661 90819791 -57963681 + MIR SINE MIR 117 245 -17 641 280 95 0 chr11 90819830 90820019 -57963453 + MIR SINE MIR 53 259 -3 766 174 0 15 chr11 90820153 90820285 -57963187 + FLAM_C SINE Alu 2 131 -2 364 275 19 62 chr11 90821733 90821893 -57961579 + MIR SINE MIR 108 260 -2 413 297 54 50 chr11 90823100 90823322 -57960150 + MIR SINE MIR 29 251 -11 649 293 39 102 chr11 90823331 90823666 -57959806 + L2 LINE L2 2959 3272 0 539 228 156 18 chr11 90825273 90825440 -57958032 - MIR3 SINE MIR -16 192 3 306 0 0 0 chr11 90825897 90825931 -57957541 + (A)n Simple_repeat Simple_repeat 1 34 0 369 321 35 93 chr11 90827129 90827419 -57956053 + L2 LINE L2 2914 3186 -86 469 284 38 6 chr11 90828323 90828506 -57954966 + MER5A DNA MER1_type 1 189 0 184 29 0 57 chr11 90828841 90828876 -57954596 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1587 156 7 20 chr11 90829009 90829311 -57954161 + AluSx SINE Alu 1 298 -14 466 159 11 0 chr11 90830835 90830923 -57952549 + Charlie5 DNA MER1_type 2497 2585 -27 2085 122 3 38 chr11 90831375 90831560 -57951912 - AluSx SINE Alu -3 309 138 2155 93 0 10 chr11 90831560 90831861 -57951611 - AluY SINE Alu -13 298 1 2085 122 3 38 chr11 90831861 90831995 -57951477 - AluSx SINE Alu -174 138 1 217 267 87 80 chr11 90832379 90832529 -57950943 + L2 LINE L2 2313 2463 -851 204 292 194 14 chr11 90832993 90833065 -57950407 + L2 LINE L2 2542 2626 -688 552 327 72 28 chr11 90833187 90833618 -57949854 + L1ME LINE L1 3 452 -5618 673 252 54 19 chr11 90833868 90834181 -57949291 + L1M4 LINE L1 3086 3409 -2737 4747 235 65 48 chr11 90834290 90834595 -57948877 - L1MEc LINE L1 -1979 4236 3938 2922 163 33 0 chr11 90834595 90835074 -57948398 + LTR42 LTR ERVL 1 495 0 4747 235 65 48 chr11 90835074 90836528 -57946944 - L1MEc LINE L1 -2277 3938 2433 1793 150 40 0 chr11 90836528 90836802 -57946670 - AluJo SINE Alu -27 285 1 4747 235 65 48 chr11 90836802 90837156 -57946316 - L1MEc LINE L1 -3782 2433 2086 1499 203 57 83 chr11 90837198 90837670 -57945802 - MLT1C LTR MaLR -5 462 3 594 236 95 10 chr11 90837678 90837991 -57945481 - L1MEc LINE L1 -4361 2035 1670 2768 141 133 19 chr11 90838041 90838671 -57944801 - L1MB2 LINE L1 -9 6162 5461 1066 214 44 7 chr11 90838670 90839016 -57944456 - L1P LINE L1 -782 5364 5024 * 227 204 0 0 chr11 90839014 90839063 -57944409 - L1MEc LINE L1 -5259 1137 1089 * 292 301 184 0 chr11 90839571 90839707 -57943765 - MIR SINE MIR -11 251 91 1856 165 93 3 chr11 90839891 90840225 -57943247 + MLT1A1 LTR MaLR 2 365 0 695 281 87 13 chr11 90840227 90840458 -57943014 - MIR SINE MIR -6 256 9 287 211 0 18 chr11 90840913 90840970 -57942502 + L2 LINE L2 3242 3297 -16 2309 119 0 6 chr11 90841291 90841603 -57941869 - AluSx SINE Alu -2 310 1 261 137 118 0 chr11 90841623 90841674 -57941798 + L2 LINE L2 3257 3313 0 294 143 0 0 chr11 90842409 90842458 -57941014 + (GAAAA)n Simple_repeat Simple_repeat 3 51 0 369 321 35 93 chr11 90843497 90843787 -57939685 + L2 LINE L2 2914 3186 -86 466 277 38 11 chr11 90844691 90844875 -57938597 + MER5A DNA MER1_type 1 189 0 1224 91 0 0 chr11 90845378 90845532 -57937940 + AluSq SINE Alu 1 154 -159 190 333 81 27 chr11 90845935 90846046 -57937426 + MIR SINE MIR 88 204 -58 223 234 21 0 chr11 90846087 90846134 -57937338 + L2 LINE L2 3217 3264 -8 2193 116 0 3 chr11 90846847 90847140 -57936332 - AluSx SINE Alu -20 292 1 217 267 87 80 chr11 90847526 90847676 -57935796 + L2 LINE L2 2313 2463 -851 204 292 194 14 chr11 90848140 90848212 -57935260 + L2 LINE L2 2542 2626 -688 552 327 72 28 chr11 90848334 90848765 -57934707 + L1ME LINE L1 3 452 -5618 598 260 58 19 chr11 90849015 90849327 -57934145 + L1M4 LINE L1 3086 3409 -2737 4791 236 64 48 chr11 90849436 90849741 -57933731 - L1MEc LINE L1 -1979 4236 3937 2922 163 33 0 chr11 90849741 90850220 -57933252 + LTR42 LTR ERVL 1 495 0 4791 236 64 48 chr11 90850220 90851677 -57931795 - L1MEc LINE L1 -2278 3937 2433 1793 150 40 0 chr11 90851677 90851951 -57931521 - AluJo SINE Alu -27 285 1 4791 236 64 48 chr11 90851951 90852305 -57931167 - L1MEc LINE L1 -3782 2433 2086 1499 203 57 83 chr11 90852347 90852819 -57930653 - MLT1C LTR MaLR -5 462 3 594 236 95 10 chr11 90852827 90853140 -57930332 - L1MEc LINE L1 -4361 2035 1670 2768 141 133 19 chr11 90853190 90853820 -57929652 - L1MB2 LINE L1 -9 6162 5461 1072 211 49 7 chr11 90853819 90854164 -57929308 - L1P LINE L1 -782 5364 5024 * 227 204 0 0 chr11 90854162 90854211 -57929261 - L1MEc LINE L1 -5259 1137 1089 * 292 301 184 0 chr11 90854719 90854855 -57928617 - MIR SINE MIR -11 251 91 1856 165 93 3 chr11 90855039 90855373 -57928099 + MLT1A1 LTR MaLR 2 365 0 695 281 87 13 chr11 90855375 90855606 -57927866 - MIR SINE MIR -6 256 9 287 211 0 18 chr11 90856061 90856118 -57927354 + L2 LINE L2 3242 3297 -16 300 337 113 35 chr11 90856229 90856439 -57927033 + L2 LINE L2 2969 3208 -64 2228 129 0 6 chr11 90856439 90856750 -57926722 - AluSx SINE Alu -3 309 1 300 337 113 35 chr11 90856750 90856821 -57926651 + L2 LINE L2 3208 3272 0 306 164 0 0 chr11 90857557 90857612 -57925860 + A-rich Low_complexity Low_complexity 4 58 0 2045 122 38 0 chr11 90857967 90858255 -57925217 - AluSx SINE Alu -13 299 1 398 327 148 11 chr11 90858310 90858573 -57924899 - L2 LINE L2 -10 3303 3005 576 282 53 0 chr11 90858644 90858814 -57924658 - MIR SINE MIR -17 245 67 189 188 50 125 chr11 90858896 90858976 -57924496 + MIR SINE MIR 116 189 -73 413 231 8 97 chr11 90859400 90859534 -57923938 - L2 LINE L2 -14 3299 3178 6610 24 0 0 chr11 90859774 90860606 -57922866 + L1PA3 LINE L1 5336 6167 0 553 224 0 14 chr11 90860621 90860764 -57922708 + L1MB8 LINE L1 6035 6175 -3 267 31 0 0 chr11 90860767 90860799 -57922673 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 1455 109 10 0 chr11 90860936 90861128 -57922344 + AluSg/x SINE Alu 83 276 -36 2380 89 3 0 chr11 90861230 90861534 -57921938 - AluSq SINE Alu -8 305 1 804 252 86 33 chr11 90862343 90862814 -57920658 + L1ME LINE L1 5149 5652 -514 563 261 149 5 chr11 90862815 90863003 -57920469 - MER58C DNA MER1_type 0 215 1 2284 96 7 3 chr11 90863087 90863378 -57920094 + AluSx SINE Alu 1 292 -20 223 234 21 0 chr11 90864091 90864138 -57919334 - L2 LINE L2 -8 3264 3217 190 333 81 27 chr11 90864179 90864290 -57919182 - MIR SINE MIR -58 204 88 2858 10 0 0 chr11 90864586 90864897 -57918575 - AluY SINE Alu 0 311 1 484 324 96 19 chr11 90865313 90865625 -57917847 + L1M4 LINE L1 4577 4912 -1234 1998 128 10 40 chr11 90865636 90865940 -57917532 - AluSx SINE Alu -17 295 1 1104 114 0 7 chr11 90866252 90866401 -57917071 + AluSq SINE Alu 9 156 -157 768 107 0 9 chr11 90866428 90866540 -57916932 - FLAM_C SINE Alu -32 111 1 214 351 13 0 chr11 90866872 90866949 -57916523 - L2 LINE L2 0 3313 3236 2105 144 57 10 chr11 90867414 90867802 -57915670 - MER65A LTR ERV1 0 445 40 631 92 28 18 chr11 90867948 90868057 -57915415 - L1MA5A LINE L1 -2 6295 6186 555 248 45 10 chr11 90868086 90868288 -57915184 + L1MC4 LINE L1 7741 7949 -93 376 324 138 57 chr11 90868664 90869307 -57914165 - L1M2 LINE L1 -5443 1406 520 24 0 0 0 chr11 90870935 90870959 -57912513 + AT_rich Low_complexity Low_complexity 1 24 0 285 29 0 0 chr11 90871622 90871656 -57911816 + (TA)n Simple_repeat Simple_repeat 1 34 0 474 240 19 19 chr11 90875649 90875803 -57907669 - L1ME4a LINE L1 0 6121 5968 839 191 82 5 chr11 90876185 90876379 -57907093 - MER3 DNA MER1_type 0 209 1 21 71 0 0 chr11 90878492 90878534 -57904938 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr11 90878694 90878715 -57904757 + AT_rich Low_complexity Low_complexity 1 21 0 202 169 31 0 chr11 90878733 90878798 -57904674 + (TA)n Simple_repeat Simple_repeat 2 68 0 2305 88 0 10 chr11 90878866 90879162 -57904310 + AluSq SINE Alu 2 294 -19 186 106 64 0 chr11 90880788 90880835 -57902637 + (TA)n Simple_repeat Simple_repeat 1 50 0 2024 129 7 0 chr11 90881450 90881736 -57901736 - AluSx SINE Alu -24 288 1 387 344 76 33 chr11 90882052 90882408 -57901064 + L2 LINE L2 2518 3008 -264 2409 85 3 0 chr11 90882526 90882831 -57900641 - AluSq SINE Alu -7 306 1 804 255 100 31 chr11 90883491 90884111 -57899361 + L1ME LINE L1 4980 5652 -514 563 261 149 5 chr11 90884112 90884300 -57899172 - MER58C DNA MER1_type 0 215 1 2240 91 7 3 chr11 90884384 90884682 -57898790 + AluSx SINE Alu 1 299 -13 466 159 11 0 chr11 90886206 90886294 -57897178 + Charlie5 DNA MER1_type 2497 2585 -27 2085 122 3 38 chr11 90886746 90886931 -57896541 - AluSx SINE Alu -3 309 138 2341 80 0 3 chr11 90886931 90887230 -57896242 - AluY SINE Alu -13 298 1 2085 122 3 38 chr11 90887230 90887364 -57896108 - AluSx SINE Alu -174 138 1 217 267 87 80 chr11 90887748 90887898 -57895574 + L2 LINE L2 2313 2463 -851 204 292 194 14 chr11 90888362 90888434 -57895038 + L2 LINE L2 2542 2626 -688 552 327 72 28 chr11 90888556 90888987 -57894485 + L1ME LINE L1 3 452 -5618 673 252 54 19 chr11 90889237 90889550 -57893922 + L1M4 LINE L1 3086 3409 -2737 4791 236 64 48 chr11 90889659 90889964 -57893508 - L1MEc LINE L1 -1979 4236 3937 2922 163 33 0 chr11 90889964 90890443 -57893029 + LTR42 LTR ERVL 1 495 0 4791 236 64 48 chr11 90890443 90891900 -57891572 - L1MEc LINE L1 -2278 3937 2433 1793 150 40 0 chr11 90891900 90892174 -57891298 - AluJo SINE Alu -27 285 1 4791 236 64 48 chr11 90892174 90892528 -57890944 - L1MEc LINE L1 -3782 2433 2086 1499 203 57 83 chr11 90892570 90893042 -57890430 - MLT1C LTR MaLR -5 462 3 594 236 95 10 chr11 90893050 90893363 -57890109 - L1MEc LINE L1 -4361 2035 1670 2768 141 133 19 chr11 90893413 90894043 -57889429 - L1MB2 LINE L1 -9 6162 5461 1072 211 49 7 chr11 90894042 90894387 -57889085 - L1P LINE L1 -782 5364 5024 * 227 204 0 0 chr11 90894385 90894434 -57889038 - L1MEc LINE L1 -5259 1137 1089 * 292 301 184 0 chr11 90894942 90895078 -57888394 - MIR SINE MIR -11 251 91 1856 165 93 3 chr11 90895262 90895596 -57887876 + MLT1A1 LTR MaLR 2 365 0 695 281 87 13 chr11 90895598 90895829 -57887643 - MIR SINE MIR -6 256 9 287 211 0 18 chr11 90896284 90896341 -57887131 + L2 LINE L2 3242 3297 -16 300 337 113 35 chr11 90896452 90896662 -57886810 + L2 LINE L2 2969 3208 -64 2228 129 0 6 chr11 90896662 90896973 -57886499 - AluSx SINE Alu -3 309 1 300 337 113 35 chr11 90896973 90897044 -57886428 + L2 LINE L2 3208 3272 0 315 161 0 0 chr11 90897779 90897835 -57885637 + A-rich Low_complexity Low_complexity 3 58 0 2045 122 38 0 chr11 90898190 90898478 -57884994 - AluSx SINE Alu -13 299 1 398 327 148 11 chr11 90898533 90898796 -57884676 - L2 LINE L2 -10 3303 3005 576 282 53 0 chr11 90898867 90899037 -57884435 - MIR SINE MIR -17 245 67 189 188 50 125 chr11 90899119 90899199 -57884273 + MIR SINE MIR 116 189 -73 413 231 8 97 chr11 90899623 90899757 -57883715 - L2 LINE L2 -14 3299 3178 6610 24 0 0 chr11 90899997 90900829 -57882643 + L1PA3 LINE L1 5336 6167 0 553 224 0 14 chr11 90900844 90900987 -57882485 + L1MB8 LINE L1 6035 6175 -3 267 31 0 0 chr11 90900990 90901022 -57882450 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 1515 120 10 5 chr11 90901159 90901368 -57882104 + AluSg/x SINE Alu 81 290 -20 223 234 21 0 chr11 90902081 90902128 -57881344 - L2 LINE L2 -8 3264 3217 190 333 81 27 chr11 90902169 90902280 -57881192 - MIR SINE MIR -58 204 88 1224 91 0 0 chr11 90902683 90902837 -57880635 - AluSq SINE Alu -159 154 1 184 29 0 57 chr11 90902970 90903005 -57880467 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 466 277 38 11 chr11 90903340 90903524 -57879948 - MER5A DNA MER1_type 0 189 1 369 321 35 93 chr11 90904428 90904718 -57878754 - L2 LINE L2 -86 3186 2914 180 0 0 0 chr11 90907790 90907810 -57875662 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 254 206 14 0 chr11 90908431 90908504 -57874968 + GA-rich Low_complexity Low_complexity 1 74 0 224 197 0 33 chr11 90908702 90908763 -57874709 + CT-rich Low_complexity Low_complexity 2 60 0 2316 89 3 0 chr11 90910016 90910307 -57873165 + AluSg SINE Alu 2 293 -17 2201 118 0 0 chr11 90910543 90910840 -57872632 - AluSg SINE Alu -13 297 1 14672 122 23 33 chr11 90911214 90913657 -57869815 - Tigger1 DNA MER2_type 0 2418 1 2053 130 3 0 chr11 90913773 90914066 -57869406 - AluSq SINE Alu -19 294 1 22 0 0 0 chr11 90914236 90914258 -57869214 + AT_rich Low_complexity Low_complexity 1 22 0 931 148 0 0 chr11 90914265 90914400 -57869072 + AluJo SINE Alu 126 260 -52 1504 144 74 0 chr11 90914858 90915128 -57868344 - L1PA16 LINE L1 -10 6156 5867 479 345 96 50 chr11 90916011 90916312 -57867160 - L2 LINE L2 0 3272 2958 180 278 0 0 chr11 90917368 90917404 -57866068 - MIR SINE MIR -119 89 54 216 200 86 43 chr11 90917548 90917618 -57865854 + MIR SINE MIR 117 189 -73 25 0 0 0 chr11 90918003 90918028 -57865444 + AT_rich Low_complexity Low_complexity 1 25 0 2186 107 7 10 chr11 90918082 90918382 -57865090 - AluSx SINE Alu -13 299 1 540 286 133 17 chr11 90918680 90918914 -57864558 + MIR SINE MIR 2 262 0 2035 134 7 0 chr11 90918960 90919258 -57864214 - AluSp SINE Alu -13 300 1 26 30 0 0 chr11 90919267 90919300 -57864172 + AT_rich Low_complexity Low_complexity 1 33 0 4769 96 152 0 chr11 90919435 90920152 -57863320 - LTR12 LTR ERV1 0 826 1 5154 99 4 12 chr11 90920161 90920932 -57862540 - HERV9 LTR ERV1 -9 8390 7626 1981 168 87 70 chr11 90920931 90921744 -57861728 - Harlequin LTR ERV1 -5157 1739 840 * 26809 96 12 9 chr11 90921745 90926588 -57856884 - Harlequin LTR ERV1 -3455 4944 1 5315 82 113 0 chr11 90926588 90927330 -57856142 - LTR12 LTR ERV1 0 826 1 190 310 26 44 chr11 90927444 90927557 -57855915 + L2 LINE L2 2677 2787 -527 2264 97 3 0 chr11 90927621 90927920 -57855552 - AluSx SINE Alu -12 300 1 345 212 179 18 chr11 90927973 90928099 -57855373 + L2 LINE L2 3174 3312 -1 384 262 199 18 chr11 90928310 90928483 -57854989 + MIR3 SINE MIR 6 206 -56 1735 190 0 3 chr11 90929683 90929983 -57853489 - AluJo SINE Alu -13 299 1 888 256 187 0 chr11 90930658 90931012 -57852460 - L2 LINE L2 -236 3077 2664 632 218 223 0 chr11 90931013 90931201 -57852271 + AluJb SINE Alu 82 311 -1 2121 240 49 39 chr11 90931229 90931879 -57851593 - L2 LINE L2 -639 2675 2019 433 185 98 0 chr11 90931881 90931973 -57851499 - MER63C DNA MER1_type -1 929 829 2212 106 0 3 chr11 90931978 90932271 -57851201 + AluSc SINE Alu 1 292 -17 832 168 0 0 chr11 90932309 90932434 -57851038 + FLAM_C SINE Alu 1 125 -18 2838 211 65 7 chr11 90932449 90933209 -57850263 - MER63C DNA MER1_type -122 808 5 327 178 144 11 chr11 90933213 90933303 -57850169 - L2 LINE L2 -1291 2023 1922 1028 269 85 9 chr11 90933303 90933619 -57849853 - L2 LINE L2 -1660 1654 1315 192 279 15 15 chr11 90933891 90933959 -57849513 - L2 LINE L2 -219 3053 2986 383 164 48 25 chr11 90934036 90934129 -57849343 - MIR SINE MIR -76 132 39 254 93 0 23 chr11 90934247 90934290 -57849182 + (GA)n Simple_repeat Simple_repeat 2 43 0 242 286 0 0 chr11 90934293 90934349 -57849123 + (TG)n Simple_repeat Simple_repeat 2 57 0 186 43 0 0 chr11 90935093 90935116 -57848356 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 26 0 0 0 chr11 90935587 90935613 -57847859 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr11 90935666 90935696 -57847776 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr11 90935773 90935808 -57847664 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr11 90936228 90936259 -57847213 + AT_rich Low_complexity Low_complexity 1 31 0 2055 138 3 3 chr11 90937206 90937510 -57845962 - AluSg SINE Alu -6 304 1 877 149 0 0 chr11 90937513 90937647 -57845825 - AluJo SINE Alu -178 134 1 29 60 0 0 chr11 90937807 90937857 -57845615 + AT_rich Low_complexity Low_complexity 1 50 0 2297 104 3 0 chr11 90938526 90938833 -57844639 - AluSg SINE Alu -2 308 1 361 315 82 34 chr11 90939596 90939742 -57843730 - L2 LINE L2 -1 3271 3119 869 210 16 27 chr11 90940111 90940297 -57843175 + MER5A DNA MER1_type 2 185 -4 186 71 0 0 chr11 90940551 90940579 -57842893 + (TTTTTA)n Simple_repeat Simple_repeat 3 30 0 * 308 109 0 18 chr11 90940577 90940632 -57842840 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 1632 194 16 7 chr11 90940641 90940950 -57842522 - AluJb SINE Alu 0 312 1 288 263 75 12 chr11 90941697 90941777 -57841695 - L2 LINE L2 0 3313 3229 2104 117 7 17 chr11 90941861 90942161 -57841311 - AluSg SINE Alu -13 297 1 234 303 0 45 chr11 90943293 90943359 -57840113 + L2 LINE L2 3117 3179 -93 324 318 114 6 chr11 90943410 90943586 -57839886 - L2 LINE L2 -1 3312 3118 12731 169 46 7 chr11 90943694 90947603 -57835869 + L1PB1 LINE L1 496 4583 -2279 2064 123 3 20 chr11 90947603 90947904 -57835568 + AluSg SINE Alu 1 296 -14 12731 169 46 7 chr11 90947904 90948247 -57835225 + L1PB1 LINE L1 4583 4911 -1951 4913 153 44 7 chr11 90948256 90949238 -57834234 + L1PB1 LINE L1 5508 6553 -314 378 0 0 0 chr11 90949238 90949280 -57834192 + (CA)n Simple_repeat Simple_repeat 2 43 0 4913 153 44 7 chr11 90949280 90949606 -57833866 + L1PB1 LINE L1 6553 6865 -2 1503 196 62 0 chr11 90950135 90950248 -57833224 + AluJb SINE Alu 3 108 -204 276 77 0 0 chr11 90950248 90950287 -57833185 + (CAA)n Simple_repeat Simple_repeat 1 39 0 1503 196 62 0 chr11 90950287 90950449 -57833023 + AluJb SINE Alu 108 295 -17 457 196 9 9 chr11 90950450 90950562 -57832910 + (TA)n Simple_repeat Simple_repeat 2 113 0 387 0 0 0 chr11 90950914 90950957 -57832515 + (T)n Simple_repeat Simple_repeat 1 43 0 209 314 34 68 chr11 90952210 90952328 -57831144 + MIR SINE MIR 47 160 -102 1015 179 36 0 chr11 90952336 90952504 -57830968 + FRAM SINE Alu 1 169 -7 231 303 34 0 chr11 90952632 90952721 -57830751 + MER117 DNA MER1_type 67 158 -39 249 295 31 78 chr11 90952943 90953072 -57830400 + L2 LINE L2 3189 3311 -2 399 167 10 21 chr11 90953217 90953313 -57830159 - L1MA5A LINE L1 -2 6295 6201 449 258 61 49 chr11 90953357 90953520 -57829952 - MIR SINE MIR -65 197 33 450 271 93 0 chr11 90953592 90953721 -57829751 + MIR3 SINE MIR 4 144 -64 370 300 36 0 chr11 90955195 90955305 -57828167 + MIR SINE MIR 41 154 -108 224 301 14 14 chr11 90955651 90955724 -57827748 - MIR SINE MIR -111 97 25 24 67 0 0 chr11 90955924 90955969 -57827503 + AT_rich Low_complexity Low_complexity 1 45 0 2518 83 0 3 chr11 90957678 90957990 -57825482 + AluSx SINE Alu 1 311 -1 24 0 0 0 chr11 90958036 90958060 -57825412 + AT_rich Low_complexity Low_complexity 1 24 0 422 255 124 0 chr11 90958092 90958237 -57825235 + MIR SINE MIR 66 228 -34 277 288 63 18 chr11 90958500 90958611 -57824861 + L2 LINE L2 2955 3070 -202 394 270 50 83 chr11 90958715 90959015 -57824457 + MLT1I LTR MaLR 81 370 -39 204 191 48 0 chr11 90959122 90959164 -57824308 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 1036 272 112 59 chr11 90959738 90960256 -57823216 - L2 LINE L2 -2 3311 2763 273 207 26 138 chr11 90960325 90960384 -57823088 - MIR SINE MIR -52 210 169 1892 166 0 0 chr11 90960384 90960668 -57822804 - AluSx SINE Alu -28 284 1 273 207 26 138 chr11 90960668 90960724 -57822748 - MIR SINE MIR -93 169 108 500 301 143 37 chr11 90961098 90961672 -57821800 + L2 LINE L2 2636 3272 0 214 336 88 16 chr11 90961770 90961895 -57821577 + MIR SINE MIR 49 145 -63 306 298 101 28 chr11 90962829 90963007 -57820465 - L3 LINE CR1 -259 1318 1128 375 302 153 11 chr11 90963014 90963203 -57820269 - MIR SINE MIR -31 231 16 414 259 0 0 chr11 90963237 90963318 -57820154 - MIR3 SINE MIR -116 92 12 181 260 0 0 chr11 90963820 90963870 -57819602 + L2 LINE L2 3264 3313 0 2164 104 0 0 chr11 90963955 90964243 -57819229 - AluSg SINE Alu -21 289 2 189 156 0 0 chr11 90965529 90965561 -57817911 - L2 LINE L2 -210 3062 3031 305 326 76 23 chr11 90965651 90965783 -57817689 + MER5A DNA MER1_type 30 168 -21 225 351 21 32 chr11 90965903 90965997 -57817475 - MIR SINE MIR -74 134 42 532 245 0 112 chr11 90966371 90966559 -57816913 - MER5B DNA MER1_type -4 174 8 307 261 87 26 chr11 90966601 90966716 -57816756 - MER96 DNA MER1_type? -5 170 49 452 252 118 0 chr11 90966717 90966852 -57816620 + MER96 DNA MER1_type? 25 175 0 359 278 118 14 chr11 90967095 90967239 -57816233 + MIR SINE MIR 90 248 -14 181 133 156 67 chr11 90967682 90967727 -57815745 + L2 LINE L2 3223 3271 -1 2560 172 74 2 chr11 90967847 90968318 -57815154 + MLT1D LTR MaLR 1 505 0 985 123 0 7 chr11 90968366 90968521 -57814951 - LTR32 LTR ERVL -1 470 317 1840 110 70 37 chr11 90968556 90968883 -57814589 - LTR32 LTR ERVL -119 352 15 265 313 100 48 chr11 90969254 90969484 -57813988 + L2 LINE L2 2811 3052 -220 428 252 211 20 chr11 90969580 90969727 -57813745 + MIR SINE MIR 13 187 -75 303 325 93 21 chr11 90970370 90970524 -57812948 + MIR3 SINE MIR 2 163 -63 30 27 0 0 chr11 90970588 90970625 -57812847 + AT_rich Low_complexity Low_complexity 1 37 0 1656 170 15 4 chr11 90970625 90970890 -57812582 - AluJb SINE Alu -24 288 21 342 246 85 54 chr11 90971790 90971920 -57811552 + MIR3 SINE MIR 67 200 -8 468 304 114 53 chr11 90972010 90972368 -57811104 + L2 LINE L2 2854 3233 -39 441 320 46 17 chr11 90972962 90973137 -57810335 - MIR SINE MIR -55 207 28 409 217 116 8 chr11 90973574 90973703 -57809769 + MIR3 SINE MIR 43 185 -23 217 225 0 0 chr11 90973921 90973961 -57809511 + polypyrimidine Low_complexity Low_complexity 4 43 0 389 274 40 24 chr11 90974152 90974187 -57809285 - MIR3 SINE MIR -23 185 152 1860 154 7 0 chr11 90974187 90974488 -57808984 - AluSx SINE Alu 0 303 1 389 274 40 24 chr11 90974488 90974575 -57808897 - MIR3 SINE MIR -56 152 60 2080 145 42 30 chr11 90974614 90974970 -57808502 + MSTB1 LTR MaLR 1 364 -68 4309 64 14 2 chr11 90974970 90975533 -57807939 - L1PA7 LINE L1 -6 6148 5579 2080 145 42 30 chr11 90975533 90975603 -57807869 + MSTB1 LTR MaLR 364 432 0 2288 103 6 0 chr11 90976520 90976831 -57806641 - AluSq SINE Alu 0 313 1 1754 172 0 28 chr11 90977405 90977724 -57805748 + AluJb SINE Alu 1 310 -2 310 325 24 8 chr11 90978065 90978191 -57805281 - MIR SINE MIR -38 224 97 526 319 5 37 chr11 90978590 90978778 -57804694 + MIR3 SINE MIR 19 200 -8 4351 174 44 14 chr11 90978977 90979774 -57803698 + MER21B LTR ERV1 1 845 -18 2990 90 0 11 chr11 90979774 90980153 -57803319 - THE1C LTR MaLR 0 375 1 11293 111 7 40 chr11 90980153 90981787 -57801685 - THE1C-int LTR MaLR 0 1580 1 3018 93 0 8 chr11 90981787 90982163 -57801309 - THE1C LTR MaLR 0 375 3 624 222 148 32 chr11 90982307 90982496 -57800976 - MIR SINE MIR -31 231 21 3311 158 76 10 chr11 90984668 90985289 -57798183 + L1MD2 LINE L1 5696 6357 -2 236 330 78 19 chr11 90985576 90985679 -57797793 + L2 LINE L2 3205 3313 0 238 268 152 24 chr11 90985869 90986033 -57797439 + MIR SINE MIR 66 250 -12 285 155 0 0 chr11 90986384 90986442 -57797030 + T-rich Low_complexity Low_complexity 1 58 0 225 196 0 0 chr11 90986866 90986922 -57796550 + T-rich Low_complexity Low_complexity 1 56 0 400 322 27 0 chr11 90987447 90987593 -57795879 - MIR SINE MIR -11 251 102 192 40 0 0 chr11 90988298 90988323 -57795149 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 905 136 100 0 chr11 90988325 90988465 -57795007 - AluJo SINE Alu -26 286 133 801 183 0 0 chr11 90988600 90988731 -57794741 - AluJo SINE Alu -180 132 2 528 285 34 17 chr11 90988788 90988967 -57794505 - MIR SINE MIR 0 262 81 399 129 12 71 chr11 90989097 90989129 -57794343 + MER116 DNA Mariner 1 33 -47 1985 111 70 26 chr11 90989129 90989473 -57793999 - MER46B DNA MER2_type -2 234 1 399 129 12 71 chr11 90989473 90989525 -57793947 + MER116 DNA Mariner 33 80 0 354 259 32 95 chr11 90989536 90989694 -57793778 + MIR3 SINE MIR 37 184 -24 270 236 0 0 chr11 90989728 90989783 -57793689 - L2 LINE L2 0 3313 3259 1996 141 0 23 chr11 90990079 90990378 -57793094 + AluSx SINE Alu 1 292 -20 324 355 30 6 chr11 90990590 90990756 -57792716 + MIR3 SINE MIR 18 187 -21 6767 30 11 0 chr11 90991827 90992618 -57790854 - L1PA3 LINE L1 -3 6152 5353 21 0 0 0 chr11 90993078 90993099 -57790373 + AT_rich Low_complexity Low_complexity 1 21 0 969 137 0 0 chr11 90993235 90993366 -57790106 - AluJo SINE Alu -171 131 1 1729 183 7 7 chr11 90993375 90993675 -57789797 - AluJo SINE Alu -12 300 1 260 264 272 8 chr11 90994217 90994342 -57789130 + MIR SINE MIR 81 238 -24 240 241 0 0 chr11 90994634 90994688 -57788784 - L2 LINE L2 -3 3310 3257 537 335 50 9 chr11 90995321 90995539 -57787933 + MIR SINE MIR 20 246 -16 1294 142 14 24 chr11 90996115 90996326 -57787146 + AluJo SINE Alu 14 222 -90 353 311 59 15 chr11 90996356 90996491 -57786981 + MIR SINE MIR 76 216 -46 2267 119 3 0 chr11 90996541 90996852 -57786620 + AluSx SINE Alu 1 312 0 1597 147 3 50 chr11 90997073 90997372 -57786100 - AluSx SINE Alu -27 285 1 3104 175 48 11 chr11 90997722 90998264 -57785208 - MER68 LTR ERV1 0 562 1 224 316 221 33 chr11 90998778 90999113 -57784359 + L2 LINE L2 2874 3271 -1 1737 152 0 11 chr11 90999522 90999792 -57783680 - AluJo SINE Alu -45 267 1 2123 109 20 3 chr11 91001033 91001327 -57782145 - AluSg SINE Alu -11 299 1 1295 114 0 0 chr11 91001423 91001599 -57781873 - AluSg/x SINE Alu 0 310 135 314 133 0 0 chr11 91001599 91001644 -57781828 - Alu SINE Alu -257 45 1 205 222 125 0 chr11 91001650 91001722 -57781750 + L2 LINE L2 2974 3054 -218 238 111 42 42 chr11 91001833 91001905 -57781567 + GA-rich Low_complexity Low_complexity 4 75 0 565 294 95 5 chr11 91002926 91003137 -57780335 + MIR SINE MIR 20 249 -13 1095 201 13 46 chr11 91003618 91003857 -57779615 + MIR SINE MIR 24 254 -8 940 159 0 0 chr11 91004422 91004554 -57778918 + FLAM_C SINE Alu 1 132 -1 302 250 83 19 chr11 91005321 91005429 -57778043 - L2 LINE L2 0 3313 3199 22 0 0 0 chr11 91005776 91005798 -57777674 + AT_rich Low_complexity Low_complexity 1 22 0 394 331 83 0 chr11 91006003 91006160 -57777312 - MIR3 SINE MIR -7 201 32 355 268 17 60 chr11 91006672 91006836 -57776636 - MIR SINE MIR -64 144 40 2206 100 0 0 chr11 91007272 91007578 -57775894 - AluSg SINE Alu 0 306 1 207 67 0 0 chr11 91008348 91008378 -57775094 - L2 LINE L2 0 3313 3284 195 311 0 0 chr11 91008630 91008691 -57774781 + MIR SINE MIR 185 245 -17 668 244 122 5 chr11 91008746 91008959 -57774513 + MIR SINE MIR 11 248 -14 369 254 27 0 chr11 91010050 91010160 -57773312 - MIR3 SINE MIR -49 159 47 254 158 30 79 chr11 91010455 91010556 -57772916 + C-rich Low_complexity Low_complexity 5 100 0 216 289 63 34 chr11 91010786 91010905 -57772567 + MIR SINE MIR 93 226 -36 1914 135 3 23 chr11 91011031 91011335 -57772137 + AluSx SINE Alu 1 298 -14 524 272 68 12 chr11 91012480 91012642 -57770830 + MIR SINE MIR 87 257 -5 294 238 152 48 chr11 91012777 91012882 -57770590 + MIR SINE MIR 6 121 -141 348 127 0 0 chr11 91012902 91012957 -57770515 + (TTCC)n Simple_repeat Simple_repeat 1 55 0 1431 171 95 0 chr11 91012957 91013220 -57770252 - AluJb SINE Alu -24 288 1 275 302 158 0 chr11 91013221 91013360 -57770112 + MIR SINE MIR 97 257 -5 483 250 36 56 chr11 91014766 91014962 -57768510 - MIR SINE MIR -40 222 31 2198 124 0 9 chr11 91015094 91015409 -57768063 + AluSx SINE Alu 1 312 0 1254 173 8 14 chr11 91015580 91015840 -57767632 + L1MB3 LINE L1 5894 6141 -42 1940 149 0 19 chr11 91015840 91016148 -57767324 + AluJo SINE Alu 1 302 -10 275 271 193 14 chr11 91016396 91016536 -57766936 - MIR SINE MIR -18 244 80 1099 163 217 0 chr11 91016536 91016794 -57766678 + MER33 DNA MER1_type 1 314 -10 2156 138 3 0 chr11 91017110 91017415 -57766057 - AluSx SINE Alu -6 306 1 215 347 132 25 chr11 91017688 91017809 -57765663 + MIR3 SINE MIR 21 154 -54 483 63 0 0 chr11 91017869 91017932 -57765540 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 958 175 0 7 chr11 91017936 91018090 -57765382 - AluJb SINE Alu -37 275 123 463 326 17 33 chr11 91018103 91018284 -57765188 + MIR3 SINE MIR 30 207 -1 300 209 66 44 chr11 91018513 91018604 -57764868 - MLT1H1 LTR MaLR 0 555 463 810 161 12 31 chr11 91019290 91019451 -57764021 + Charlie4 DNA MER1_type 74 231 -1730 746 174 13 13 chr11 91019477 91019632 -57763840 + Charlie4 DNA MER1_type 1807 1961 0 792 189 63 13 chr11 91019692 91019851 -57763621 + MER5A DNA MER1_type 22 188 -1 450 234 112 0 chr11 91019976 91020083 -57763389 + L1ME3 LINE L1 6038 6156 -6 489 253 13 45 chr11 91020150 91020304 -57763168 - L2 LINE L2 -1 3312 3164 611 212 71 24 chr11 91020356 91020526 -57762946 + MER104 DNA MER2_type 1 178 -2 426 247 31 0 chr11 91021282 91021379 -57762093 - MIR SINE MIR -68 194 95 488 258 40 0 chr11 91022351 91022475 -57760997 + L2 LINE L2 3185 3313 0 2472 0 0 0 chr11 91024365 91024626 -57758846 + AluYa5 SINE Alu 39 299 -12 417 298 62 25 chr11 91024946 91025107 -57758365 + MIR SINE MIR 21 187 -75 366 248 60 3 chr11 91025308 91025444 -57758028 + MER5A DNA MER1_type 9 189 0 251 333 61 12 chr11 91026588 91026753 -57756719 + L2 LINE L2 2815 2987 -285 223 207 146 49 chr11 91026818 91026900 -57756572 + L2 LINE L2 3183 3272 0 459 295 16 53 chr11 91027883 91028073 -57755399 - MIR SINE MIR -57 205 23 4834 116 57 4 chr11 91028305 91029049 -57754423 - L1PA16 LINE L1 -9 6157 5375 181 147 29 0 chr11 91029150 91029184 -57754288 - MIR3 SINE MIR -50 158 124 783 242 44 6 chr11 91029321 91029503 -57753969 - MER5A DNA MER1_type 0 189 1 887 306 44 28 chr11 91029780 91030169 -57753303 + LTR16C LTR ERVL 97 491 0 678 187 8 0 chr11 91030828 91030962 -57752510 + L1MA10 LINE L1 6171 6305 -29 328 219 0 0 chr11 91031075 91031148 -57752324 - L1MA10 LINE L1 -36 6298 6226 493 306 67 10 chr11 91031385 91031578 -57751894 - MIR SINE MIR 0 262 59 401 352 59 31 chr11 91031627 91031914 -57751558 - L2 LINE L2 -18 3295 3001 1692 163 0 18 chr11 91031941 91032347 -57751125 + AluJo SINE Alu 12 412 0 1490 179 3 83 chr11 91032642 91032978 -57750494 - AluJo SINE Alu -1 311 3 3023 192 130 12 chr11 91032992 91033867 -57749605 + L1ME1 LINE L1 5186 6161 -5 2235 90 10 10 chr11 91033891 91034190 -57749282 + AluSx SINE Alu 1 299 -13 2024 144 7 0 chr11 91034200 91034491 -57748981 + AluSq SINE Alu 3 295 -18 1504 249 77 13 chr11 91034525 91034978 -57748494 + MLT1H1 LTR MaLR 23 504 -51 2307 82 3 25 chr11 91034983 91035299 -57748173 - AluY SINE Alu -2 309 1 878 133 0 15 chr11 91035310 91035445 -57748027 - FLAM_C SINE Alu 0 133 1 729 213 43 18 chr11 91035479 91035643 -57747829 - MLT1F1 LTR MaLR 0 567 400 378 343 44 67 chr11 91035731 91036046 -57747426 - L2 LINE L2 -158 3114 2807 230 281 42 0 chr11 91036648 91036744 -57746728 + L1MB8 LINE L1 5864 5963 -215 785 209 194 5 chr11 91036988 91037194 -57746278 + MIR SINE MIR 15 259 -3 2068 141 20 0 chr11 91037534 91037833 -57745639 - AluSx SINE Alu -7 305 1 257 196 0 0 chr11 91037989 91038035 -57745437 - L2 LINE L2 -17 3296 3251 918 276 97 39 chr11 91038282 91038714 -57744758 - LTR16C LTR ERVL -9 482 26 457 333 8 0 chr11 91038798 91038927 -57744545 + L2 LINE L2 3136 3265 -7 6318 78 82 3 chr11 91039092 91040462 -57743010 - L1PA13 LINE L1 -8 6155 4722 4746 83 13 7 chr11 91040614 91041312 -57742160 + L1MA2 LINE L1 5259 5960 -342 291 67 33 0 chr11 91041319 91041379 -57742093 - L1MA1 LINE L1 -267 6035 5974 541 128 0 0 chr11 91041503 91041597 -57741875 + L1MA2 LINE L1 6051 6144 -160 21 0 0 0 chr11 91041737 91041758 -57741714 + AT_rich Low_complexity Low_complexity 1 21 0 606 227 39 0 chr11 91041759 91041887 -57741585 + FLAM_A SINE Alu 1 133 0 313 161 0 0 chr11 91041906 91041968 -57741504 + L1ME1 LINE L1 6043 6104 -62 2289 163 54 10 chr11 91041999 91042409 -57741063 + MSTA LTR MaLR 1 428 0 640 149 65 202 chr11 91042679 91042927 -57740545 + MER20 DNA MER1_type 1 214 -5 1012 186 126 83 chr11 91043257 91043629 -57739843 - MLT1B LTR MaLR 0 390 3 24 53 0 0 chr11 91044045 91044083 -57739389 + AT_rich Low_complexity Low_complexity 1 38 0 213 159 23 0 chr11 91044272 91044316 -57739156 + (TTA)n Simple_repeat Simple_repeat 2 46 0 275 274 57 117 chr11 91044664 91045015 -57738457 + HAL1 LINE L1 341 670 -1837 853 284 77 20 chr11 91045061 91045504 -57737968 + HAL1 LINE L1 1812 2279 -228 308 268 81 32 chr11 91045506 91045629 -57737843 + L1M4 LINE L1 4853 4981 -1165 1519 168 99 60 chr11 91045652 91045737 -57737735 - MER47A DNA MER2_type -1957 366 286 1886 184 7 0 chr11 91045737 91046047 -57737425 + AluJo SINE Alu 1 312 0 1519 168 99 60 chr11 91046047 91046313 -57737159 - MER47A DNA MER2_type -2037 286 1 344 292 94 18 chr11 91046345 91046516 -57736956 + L1M4 LINE L1 5067 5250 -896 526 306 84 32 chr11 91046595 91046758 -57736714 - L1MEd LINE L1 -5294 825 672 2090 131 0 26 chr11 91046758 91047070 -57736402 + AluSx SINE Alu 1 304 -8 526 306 84 32 chr11 91047070 91047249 -57736223 - L1MEd LINE L1 -5447 672 465 491 90 6 72 chr11 91047335 91047501 -57735971 + (TA)n Simple_repeat Simple_repeat 2 156 0 216 97 0 0 chr11 91048135 91048166 -57735306 + (T)n Simple_repeat Simple_repeat 1 31 0 271 220 119 37 chr11 91048510 91048619 -57734853 + MIR SINE MIR 20 137 -71 218 284 40 0 chr11 91049534 91049608 -57733864 + MIR3 SINE MIR 85 161 -47 1432 173 69 0 chr11 91050229 91050489 -57732983 + AluSx SINE Alu 16 293 -19 225 0 0 0 chr11 91050508 91050533 -57732939 + (TTTTTA)n Simple_repeat Simple_repeat 2 26 0 10146 59 47 7 chr11 91050675 91052004 -57731468 - SVA Other Other -2 1384 2 7231 17 0 2 chr11 91053164 91054044 -57729428 - L1PA2 LINE L1 -3 6152 5275 * 9468 25 3 0 chr11 91054032 91055207 -57728265 + L1PA2 LINE L1 4121 5299 -847 463 283 6 6 chr11 91055687 91055853 -57727619 + L1M4 LINE L1 4783 4948 -1198 2725 220 45 27 chr11 91055981 91056941 -57726531 - L1M1 LINE L1 -3974 3591 2615 283 100 0 60 chr11 91057262 91057312 -57726160 - Alu SINE Alu -254 47 1 403 372 76 16 chr11 91057492 91057742 -57725730 - L2 LINE L2 -823 2491 2227 386 327 102 18 chr11 91057681 91057907 -57725565 + L3 LINE CR1 1301 1545 -32 * 610 134 67 8 chr11 91058026 91058160 -57725312 + L1MC3 LINE L1 7638 7779 -6 213 247 14 68 chr11 91058207 91058280 -57725192 - L2 LINE L2 -545 2769 2701 217 127 127 0 chr11 91058280 91058351 -57725121 + (TTTAA)n Simple_repeat Simple_repeat 1 80 0 920 143 0 0 chr11 91058351 91058484 -57724988 - AluSg/x SINE Alu -24 286 154 322 333 56 12 chr11 91058485 91058647 -57724825 - L2 LINE L2 -601 2713 2545 365 98 0 0 chr11 91058721 91058782 -57724690 + Alu SINE Alu 1 61 -247 876 141 19 19 chr11 91058882 91059038 -57724434 + AluSq SINE Alu 110 265 -48 593 49 0 12 chr11 91059042 91059124 -57724348 + (TAGA)n Simple_repeat Simple_repeat 4 84 0 1308 163 42 62 chr11 91059130 91059419 -57724053 + AluJb SINE Alu 1 283 -29 1174 169 5 0 chr11 91059428 91059617 -57723855 - AluJo SINE Alu -2 310 121 23 0 0 0 chr11 91060241 91060264 -57723208 + AT_rich Low_complexity Low_complexity 1 23 0 1898 144 23 7 chr11 91060290 91060589 -57722883 - AluSx SINE Alu -8 304 1 448 156 10 214 chr11 91060592 91060784 -57722688 - MER8 DNA MER2_type -48 191 39 229 308 110 39 chr11 91060838 91061020 -57722452 - L2 LINE L2 -854 2460 2266 625 249 161 67 chr11 91061024 91061490 -57721982 - HAL1 LINE L1 -630 1877 1261 1867 146 27 7 chr11 91061490 91061784 -57721688 - AluJo SINE Alu -4 308 9 625 249 161 67 chr11 91061784 91061902 -57721570 - HAL1 LINE L1 -1246 1261 1155 918 200 0 0 chr11 91061939 91062120 -57721352 - AluJb SINE Alu 0 309 129 1120 158 54 20 chr11 91062220 91062423 -57721049 + AluJb SINE Alu 103 312 0 1199 207 25 31 chr11 91062424 91062777 -57720695 + L1MD1 LINE L1 4490 4840 -1306 2167 107 17 0 chr11 91062778 91063069 -57720403 + AluSq SINE Alu 1 296 -17 236 143 0 0 chr11 91063092 91063134 -57720338 - L1M4 LINE L1 -3647 2499 2458 * 775 73 35 1 chr11 91063128 91063253 -57720219 - L1M1 LINE L1 -728 5450 5332 3969 182 32 27 chr11 91063254 91064594 -57718878 + L1MD1 LINE L1 4850 6242 0 23 68 0 0 chr11 91065176 91065220 -57718252 + AT_rich Low_complexity Low_complexity 1 44 0 1905 146 3 7 chr11 91065223 91065511 -57717961 - AluJo SINE Alu -25 287 1 21 57 0 0 chr11 91065540 91065575 -57717897 + AT_rich Low_complexity Low_complexity 1 35 0 2024 154 7 0 chr11 91065894 91066200 -57717272 + AluSx SINE Alu 1 308 -4 636 226 23 1 chr11 91066202 91066377 -57717095 - L1MD3 LINE L1 -46 7949 7557 635 293 121 30 chr11 91066403 91066775 -57716697 - L2 LINE L2 -1067 2247 1842 210 333 144 9 chr11 91067023 91067134 -57716338 - L2 LINE L2 -8 3305 3180 201 333 143 0 chr11 91067146 91067230 -57716242 - L2 LINE L2 -245 3027 2932 1781 185 89 19 chr11 91067292 91067777 -57715695 + LTR27 LTR ERV1 2 501 0 377 281 16 8 chr11 91067783 91067904 -57715568 - L2 LINE L2 -468 2846 2725 301 298 88 0 chr11 91067904 91068018 -57715454 - L2 LINE L2 -1357 1957 1834 342 244 126 16 chr11 91068562 91068689 -57714783 - MIR SINE MIR -89 173 33 434 115 0 0 chr11 91070119 91070180 -57713292 + AluSx SINE Alu 2 62 -256 2155 99 0 0 chr11 91070183 91070497 -57712975 - AluSx SINE Alu 0 314 1 1597 161 0 0 chr11 91070498 91070746 -57712726 + AluSx SINE Alu 52 299 -13 401 311 123 20 chr11 91070928 91071129 -57712343 + MIR SINE MIR 37 256 -6 362 280 57 76 chr11 91071442 91071507 -57711965 - L2 LINE L2 -2 3311 3246 210 37 0 0 chr11 91071507 91071534 -57711938 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 1943 138 0 0 chr11 91071539 91071815 -57711657 - AluSx SINE Alu -36 276 1 362 280 57 76 chr11 91071815 91072007 -57711465 - L2 LINE L2 -71 3242 3053 599 188 0 0 chr11 91072034 91072135 -57711337 - FLAM_A SINE Alu -41 101 1 462 167 0 10 chr11 91072500 91072596 -57710876 - MER53 DNA DNA -94 95 1 335 248 150 9 chr11 91073693 91073806 -57709666 - L2 LINE L2 -3 3269 3141 917 172 83 6 chr11 91073887 91074056 -57709416 + AluJo SINE Alu 1 182 -130 1836 121 11 8 chr11 91074056 91074320 -57709152 + AluSg SINE Alu 29 293 -17 183 351 0 40 chr11 91074585 91074659 -57708813 - L2 LINE L2 -1 3271 3201 1524 163 93 0 chr11 91075367 91075624 -57707848 + AluJo SINE Alu 1 281 -31 325 303 126 75 chr11 91075844 91076013 -57707459 + L2 LINE L2 2964 3123 -190 1489 160 127 11 chr11 91076013 91076288 -57707184 - AluJb SINE Alu 0 312 6 325 303 126 75 chr11 91076288 91076451 -57707021 + L2 LINE L2 3123 3313 0 27 0 0 0 chr11 91076644 91076671 -57706801 + AT_rich Low_complexity Low_complexity 1 27 0 2073 121 3 35 chr11 91076777 91077092 -57706380 - AluSx SINE Alu -7 305 1 273 314 33 50 chr11 91078468 91078589 -57704883 + L2 LINE L2 3153 3271 -1 * 685 293 43 19 chr11 91078582 91078790 -57704682 + MIR SINE MIR 24 236 -26 22 35 0 0 chr11 91079503 91079532 -57703940 + AT_rich Low_complexity Low_complexity 1 29 0 180 298 0 0 chr11 91080104 91080151 -57703321 - L2 LINE L2 -13 3259 3213 1680 166 48 10 chr11 91080674 91080969 -57702503 - AluJb SINE Alu -6 306 1 265 368 24 8 chr11 91081208 91081333 -57702139 + MIR3 SINE MIR 3 129 -79 4284 158 68 18 chr11 91081725 91082370 -57701102 - L1PA16 LINE L1 -185 5981 5370 2194 103 0 44 chr11 91082370 91082689 -57700783 - AluY SINE Alu -6 305 1 4284 158 68 18 chr11 91082689 91083529 -57699943 - L1PA16 LINE L1 -796 5370 4398 241 200 0 0 chr11 91085698 91085743 -57697729 - L1 LINE L1 -1726 4420 4376 429 217 188 0 chr11 91086199 91086337 -57697135 + MER5A DNA MER1_type 26 189 0 372 231 77 49 chr11 91086360 91086503 -57696969 - MLT1K LTR MaLR -4 584 438 2233 108 3 14 chr11 91086793 91087090 -57696382 + AluSx SINE Alu 1 294 -18 423 252 45 0 chr11 91087183 91087294 -57696178 - L2 LINE L2 -1 3271 3156 1772 162 35 0 chr11 91088503 91088793 -57694679 + AluJo SINE Alu 1 300 -12 227 326 43 22 chr11 91089820 91089912 -57693560 - L2 LINE L2 -31 3241 3148 306 0 0 0 chr11 91091219 91091253 -57692219 + (TTTAA)n Simple_repeat Simple_repeat 3 36 0 1532 207 3 23 chr11 91091253 91091542 -57691930 - AluJb SINE Alu -25 287 3 1956 137 0 20 chr11 91091774 91092073 -57691399 + AluSx SINE Alu 1 293 -19 1875 168 13 0 chr11 91092105 91092403 -57691069 - AluJo SINE Alu -10 302 1 1217 180 63 30 chr11 91092416 91092716 -57690756 - L1MDa LINE L1 -4728 1812 1503 527 152 219 0 chr11 91092716 91092842 -57690630 + FLAM_C SINE Alu 1 149 0 1256 232 22 4 chr11 91092842 91093114 -57690358 - L1MDa LINE L1 -5380 1160 884 1820 159 7 7 chr11 91093612 91093902 -57689570 - AluJo SINE Alu -22 290 1 210 118 0 0 chr11 91093959 91093993 -57689479 + (T)n Simple_repeat Simple_repeat 1 34 0 678 176 42 8 chr11 91095040 91095159 -57688313 - AluJo SINE Alu -106 206 84 1366 263 32 32 chr11 91095160 91095627 -57687845 - L1MC/D LINE L1 -2028 5780 5314 303 260 122 14 chr11 91095774 91096044 -57687428 - L1 LINE L1 -1057 5089 4797 1560 196 3 3 chr11 91096213 91096498 -57686974 + AluJb SINE Alu 1 285 -27 608 165 9 18 chr11 91098098 91098207 -57685265 - FLAM_C SINE Alu -33 110 3 24 0 0 0 chr11 91098275 91098299 -57685173 + AT_rich Low_complexity Low_complexity 1 24 0 715 191 0 0 chr11 91098299 91098414 -57685058 - AluJb SINE Alu -196 116 2 2060 148 0 0 chr11 91098419 91098717 -57684755 - AluSx SINE Alu -14 298 1 245 194 41 102 chr11 91098807 91098905 -57684567 - HAL1 LINE L1 -1594 913 822 28 0 0 0 chr11 91099564 91099592 -57683880 + AT_rich Low_complexity Low_complexity 1 28 0 290 200 18 0 chr11 91100048 91100103 -57683369 + MER20 DNA MER1_type 149 204 -15 2212 112 3 3 chr11 91101330 91101626 -57681846 - AluSx SINE Alu -16 296 1 564 238 24 24 chr11 91101853 91102021 -57681451 + MER5B DNA MER1_type 1 168 -10 406 271 170 16 chr11 91102131 91102319 -57681153 + MIR SINE MIR 4 220 -42 22 80 0 0 chr11 91102889 91102939 -57680533 + AT_rich Low_complexity Low_complexity 1 50 0 693 192 23 0 chr11 91102947 91103077 -57680395 - MER46A DNA MER2_type -81 155 23 227 56 0 0 chr11 91103080 91103116 -57680356 - Alu SINE Alu 0 302 267 834 181 145 16 chr11 91103217 91103410 -57680062 - AluJo SINE Alu -94 218 1 587 136 164 0 chr11 91103417 91103527 -57679945 + MER46A DNA MER2_type 106 233 -3 1145 157 0 0 chr11 91103572 91103738 -57679734 + AluJb SINE Alu 133 298 -14 649 284 22 6 chr11 91103773 91103956 -57679516 - MIR SINE MIR -58 204 19 213 39 0 0 chr11 91104267 91104293 -57679179 + (A)n Simple_repeat Simple_repeat 1 26 0 188 270 0 16 chr11 91104641 91104704 -57678768 - MIR3 SINE MIR -4 204 143 599 290 162 17 chr11 91104788 91105078 -57678394 - L2 LINE L2 0 3313 2982 1416 86 25 10 chr11 91105360 91105558 -57677914 - MER1A DNA MER1_type -1 528 328 288 349 19 0 chr11 91105601 91105707 -57677765 - L2 LINE L2 0 3313 3206 2174 153 0 6 chr11 91105710 91106036 -57677436 - MER1A DNA MER1_type -205 324 1 448 284 77 6 chr11 91107642 91107811 -57675661 + MIR SINE MIR 26 206 -56 2340 112 3 0 chr11 91109492 91109804 -57673668 + AluSp SINE Alu 1 313 0 195 284 45 0 chr11 91113188 91113255 -57670217 + L2 LINE L2 2584 2653 -661 * 331 306 39 102 chr11 91113241 91113349 -57670123 + L2 LINE L2 2909 3022 -250 2377 116 27 14 chr11 91113349 91113719 -57669753 - THE1C LTR MaLR 0 375 1 331 306 39 102 chr11 91113719 91113992 -57669480 + L2 LINE L2 3022 3266 -6 1520 263 71 53 chr11 91115067 91115439 -57668033 - MLT1F LTR MaLR -6 536 200 1989 147 14 0 chr11 91115439 91115913 -57667559 + AluSx SINE Alu 9 486 0 1520 263 71 53 chr11 91115913 91116107 -57667365 - MLT1F LTR MaLR -342 200 11 270 325 12 12 chr11 91116943 91117023 -57666449 + L2 LINE L2 3184 3263 -9 3154 74 56 11 chr11 91117183 91117628 -57665844 - MER4C LTR ERV1 0 465 1 2566 119 11 6 chr11 91118564 91118926 -57664546 - THE1B LTR MaLR 0 364 1 994 155 0 0 chr11 91119427 91119575 -57663897 - AluJo/FRAM SINE Alu -24 288 141 269 146 42 0 chr11 91119575 91119623 -57663849 - Alu SINE Alu -251 50 1 4788 113 11 14 chr11 91119744 91119808 -57663664 - LTR8 LTR ERV1 0 691 628 2372 68 0 47 chr11 91119808 91120130 -57663342 + AluY SINE Alu 1 307 -4 4788 113 11 14 chr11 91120130 91120758 -57662714 - LTR8 LTR ERV1 -63 628 1 1564 186 10 74 chr11 91120766 91121078 -57662394 - AluJb SINE Alu -20 292 1 360 299 99 43 chr11 91121081 91121405 -57662067 + L2 LINE L2 326 667 -2647 1641 235 86 17 chr11 91121478 91121731 -57661741 + LTR33 LTR ERVL 13 247 -274 2079 147 35 6 chr11 91121731 91122079 -57661393 + MER46B DNA MER2_type 2 234 -2 1641 235 86 17 chr11 91122079 91122288 -57661184 + LTR33 LTR ERVL 247 507 -14 344 248 9 18 chr11 91122289 91122398 -57661074 - L2 LINE L2 -1054 2260 2153 381 241 9 9 chr11 91122816 91122932 -57660540 + L1MEc LINE L1 827 942 -5454 12931 79 17 5 chr11 91122933 91124601 -57658871 + L1P3 LINE L1 1 1688 -4773 2471 86 11 6 chr11 91124701 91125049 -57658423 + L1P3 LINE L1 2287 2636 -3825 1332 221 29 43 chr11 91125711 91126029 -57657443 - MER74B LTR ERVL -94 528 214 2519 68 0 0 chr11 91126029 91126336 -57657136 - AluY SINE Alu -4 307 1 1332 221 29 43 chr11 91126336 91126393 -57657079 - MER74B LTR ERVL -408 214 158 2137 117 0 17 chr11 91126398 91126697 -57656775 - AluSx SINE Alu -18 294 1 2152 110 14 0 chr11 91127183 91127465 -57656007 - AluSx SINE Alu -21 291 6 455 301 80 0 chr11 91128605 91128804 -57654668 - L1M4 LINE L1 -1981 4165 3951 1606 146 41 4 chr11 91128805 91129073 -57654399 + AluJb SINE Alu 1 278 -34 2272 57 3 57 chr11 91129101 91129401 -57654071 + AluY SINE Alu 1 284 -27 318 176 0 0 chr11 91129401 91129486 -57653986 + (CA)n Simple_repeat Simple_repeat 1 85 0 183 23 10 0 chr11 91129510 91129577 -57653895 + (CA)n Simple_repeat Simple_repeat 2 25 0 235 262 0 19 chr11 91129598 91129705 -57653767 + (CA)n Simple_repeat Simple_repeat 1 105 0 198 0 0 0 chr11 91129726 91129748 -57653724 + (CA)n Simple_repeat Simple_repeat 2 23 0 10154 139 28 32 chr11 91129942 91131577 -57651895 + HERVL18 LTR ERVL 4421 6047 0 1500 247 81 6 chr11 91131578 91131910 -57651562 + LTR18A LTR ERVL 1 357 0 2671 156 34 10 chr11 91131991 91132407 -57651065 - MSTB LTR MaLR 0 426 1 250 286 179 27 chr11 91132594 91132706 -57650766 - L2 LINE L2 -2 3270 3142 229 255 293 19 chr11 91133064 91133170 -57650302 + MIR3 SINE MIR 4 138 -70 629 275 131 64 chr11 91134959 91135363 -57648109 + MLT1J LTR MaLR 71 501 -10 2111 149 3 0 chr11 91135427 91135735 -57647737 + AluJo SINE Alu 2 310 -2 808 250 80 9 chr11 91136171 91136395 -57647077 - MIR SINE MIR -21 241 2 2228 100 0 0 chr11 91136484 91136785 -57646687 + AluSx SINE Alu 12 312 0 26 0 0 0 chr11 91137467 91137493 -57645979 + AT_rich Low_complexity Low_complexity 1 26 0 555 228 13 60 chr11 91137554 91137703 -57645769 - Zaphod DNA AcHobo -1 4030 3889 * 2793 232 55 79 chr11 91137702 91137937 -57645535 - Zaphod DNA AcHobo -2957 1074 835 646 183 0 0 chr11 91137937 91138041 -57645431 + U13 snRNA snRNA 1 104 0 2793 232 55 79 chr11 91138041 91138452 -57645020 - Zaphod DNA AcHobo -3196 835 416 1853 136 47 10 chr11 91138452 91138753 -57644719 + AluSx SINE Alu 1 312 0 2793 232 55 79 chr11 91138753 91139115 -57644357 - Zaphod DNA AcHobo -3615 416 90 2332 67 0 3 chr11 91139115 91139424 -57644048 + AluY SINE Alu 1 308 0 2793 232 55 79 chr11 91139424 91139511 -57643961 - Zaphod DNA AcHobo -3941 90 2 22 0 0 54 chr11 91139575 91139595 -57643877 + AT_rich Low_complexity Low_complexity 1 20 -15 1868 160 11 0 chr11 91139595 91139882 -57643590 - AluSx SINE Alu -22 290 1 22 0 0 54 chr11 91139882 91139898 -57643574 + AT_rich Low_complexity Low_complexity 20 35 0 783 233 36 43 chr11 91139905 91140158 -57643314 + MIR SINE MIR 1 251 -11 712 297 95 0 chr11 91140243 91140475 -57642997 - MIR SINE MIR -1 261 8 211 263 242 0 chr11 91140581 91140680 -57642792 + L2 LINE L2 3189 3311 -2 1768 156 3 14 chr11 91140723 91141005 -57642467 - AluJo SINE Alu -19 293 15 2186 128 3 0 chr11 91141521 91141826 -57641646 - AluSq SINE Alu -7 306 1 1249 218 0 25 chr11 91142495 91142779 -57640693 - AluJo SINE Alu -35 277 1 494 339 93 13 chr11 91142971 91143207 -57640265 + MIR SINE MIR 7 261 -1 2319 217 114 18 chr11 91143686 91144364 -57639108 - L1ME2 LINE L1 -48 6116 5374 459 293 82 0 chr11 91144904 91145051 -57638421 + MIR SINE MIR 96 254 -8 2032 141 7 3 chr11 91145168 91145467 -57638005 - AluSx SINE Alu -12 300 1 244 234 0 0 chr11 91145487 91145534 -57637938 - MIR SINE MIR -63 199 153 186 250 44 59 chr11 91145529 91145597 -57637875 - MIR3 SINE MIR -132 76 10 * 21 57 0 0 chr11 91146170 91146205 -57637267 + AT_rich Low_complexity Low_complexity 1 35 0 196 309 73 0 chr11 91148126 91148194 -57635278 + MIR SINE MIR 10 82 -180 581 191 73 15 chr11 91148226 91148362 -57635110 - MER5A DNA MER1_type -2 187 44 1198 123 111 20 chr11 91148991 91149235 -57634237 + L1MA4 LINE L1 6035 6300 0 567 174 10 0 chr11 91149273 91149371 -57634101 + FLAM_A SINE Alu 1 99 -43 1618 170 55 0 chr11 91149414 91149685 -57633787 - AluJo SINE Alu -26 286 1 2395 78 0 0 chr11 91149785 91150078 -57633394 + AluY SINE Alu 1 293 -18 1868 161 3 7 chr11 91150114 91150424 -57633048 + AluSx SINE Alu 1 309 -3 1889 157 7 3 chr11 91150426 91150725 -57632747 + AluSx SINE Alu 1 300 -12 442 299 82 0 chr11 91150842 91150989 -57632483 - MIR SINE MIR -8 254 96 2102 225 117 18 chr11 91151529 91152205 -57631267 + L1ME2 LINE L1 5374 6116 -48 521 336 94 8 chr11 91152684 91152919 -57630553 - MIR SINE MIR -1 261 7 1325 215 0 24 chr11 91153111 91153399 -57630073 + AluJo SINE Alu 1 281 -31 2186 128 3 0 chr11 91154061 91154366 -57629106 + AluSq SINE Alu 1 306 -7 651 270 103 21 chr11 91154569 91154802 -57628670 - MIR SINE MIR -3 259 8 42 0 0 0 chr11 91155296 91155338 -57628134 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr11 91156254 91156275 -57627197 + AT_rich Low_complexity Low_complexity 1 21 0 2624 92 113 15 chr11 91157087 91157477 -57625995 - MSTA LTR MaLR 0 428 1 8985 96 3 13 chr11 91157708 91158992 -57624480 + L1PA7 LINE L1 1908 3178 -2968 1324 100 0 0 chr11 91158992 91159162 -57624310 + AluSc SINE Alu 120 289 -20 16426 88 10 47 chr11 91159162 91162121 -57621351 + L1PA7 LINE L1 3179 6110 -44 3437 184 19 3 chr11 91162121 91162692 -57620780 - LTR22 LTR ERVK 0 580 1 16426 88 10 47 chr11 91162692 91162736 -57620736 + L1PA7 LINE L1 6110 6154 0 449 260 68 82 chr11 91162738 91163177 -57620295 + L1MEc LINE L1 935 1367 -5029 4188 147 30 9 chr11 91163205 91163777 -57619695 - MER50 LTR ERV1 -23 711 119 1898 137 0 7 chr11 91163777 91164099 -57619373 - AluSx SINE Alu 0 320 1 4188 147 30 9 chr11 91164099 91164221 -57619251 - MER50 LTR ERV1 -615 119 1 839 210 29 39 chr11 91164221 91164475 -57618997 + L1MC3 LINE L1 6137 6334 -10 1186 199 38 31 chr11 91164526 91164787 -57618685 + AluJb SINE Alu 33 295 -17 1200 256 131 39 chr11 91164789 91165284 -57618188 + L1MEc LINE L1 2362 2945 -3270 2301 98 3 0 chr11 91165284 91165589 -57617883 - AluSx SINE Alu -6 306 1 1200 256 131 39 chr11 91165589 91165812 -57617660 + L1MEc LINE L1 2945 3146 -3069 331 167 0 0 chr11 91165813 91165867 -57617605 - MER4A LTR ERV1 0 664 611 1724 111 13 30 chr11 91167426 91167741 -57615731 - MER4A LTR ERV1 -34 630 263 645 93 21 10 chr11 91167741 91167838 -57615634 - MER4A LTR ERV1 -566 98 1 369 162 81 14 chr11 91167896 91167970 -57615502 - MER21A LTR ERV1 0 931 853 24 0 0 0 chr11 91167971 91167995 -57615477 + AT_rich Low_complexity Low_complexity 1 24 0 1074 131 17 28 chr11 91167996 91168172 -57615300 - MER21A LTR ERV1 -47 884 711 778 155 47 27 chr11 91168173 91168321 -57615151 - MER21A LTR ERV1 -718 213 63 226 121 362 0 chr11 91168353 91168411 -57615061 - MER21A LTR ERV1 -852 79 1 296 176 0 0 chr11 91168411 91168479 -57614993 + L1MEc LINE L1 3210 3277 -2938 2327 164 60 159 chr11 91168493 91168582 -57614890 - LTR8A LTR ERV1 -5 722 626 2309 118 0 0 chr11 91168582 91168887 -57614585 + AluSx SINE Alu 1 305 -7 2327 164 60 159 chr11 91168887 91169597 -57613875 - LTR8A LTR ERV1 -101 626 2 1342 166 9 18 chr11 91169597 91169820 -57613652 + AluJo SINE Alu 76 296 -16 1837 161 6 19 chr11 91169822 91170138 -57613334 + AluJo SINE Alu 1 312 0 1883 226 57 94 chr11 91170144 91170848 -57612624 + L1ME3 LINE L1 5477 6154 -8 204 82 41 82 chr11 91171043 91171092 -57612380 - L2 LINE L2 -2071 1243 1197 7164 88 10 3 chr11 91171199 91172191 -57611281 + L1P LINE L1 4079 5077 -1069 19017 142 4 7 chr11 91172191 91174942 -57608530 + HERVL18 LTR ERVL 837 3580 -2467 10431 139 25 31 chr11 91174943 91176608 -57606864 + HERVL18 LTR ERVL 4394 6047 0 1500 247 81 6 chr11 91176609 91176941 -57606531 + LTR18A LTR ERVL 1 357 0 2671 156 34 10 chr11 91177022 91177438 -57606034 - MSTB LTR MaLR 0 426 1 250 286 179 27 chr11 91177625 91177737 -57605735 - L2 LINE L2 -2 3270 3142 229 255 293 19 chr11 91178095 91178201 -57605271 + MIR3 SINE MIR 4 138 -70 629 275 131 64 chr11 91179990 91180394 -57603078 + MLT1J LTR MaLR 71 501 -10 2111 149 3 0 chr11 91180458 91180766 -57602706 + AluJo SINE Alu 2 310 -2 808 250 80 9 chr11 91181202 91181426 -57602046 - MIR SINE MIR -21 241 2 488 229 181 32 chr11 91181470 91181505 -57601967 - MIR SINE MIR -44 218 190 2117 121 7 10 chr11 91181505 91181812 -57601660 + AluSx SINE Alu 1 306 -6 488 229 181 32 chr11 91181812 91181964 -57601508 - MIR SINE MIR -72 190 3 657 250 227 35 chr11 91182240 91182799 -57600673 + L2 LINE L2 2655 3312 -1 201 267 76 53 chr11 91183064 91183195 -57600277 + L2 LINE L2 2070 2203 -1111 7392 32 9 0 chr11 91183213 91184421 -57599051 - L1PA4 LINE L1 -3 6152 4942 273 200 18 0 chr11 91184440 91184495 -57598977 - L1ME LINE L1 -473 5648 5593 826 121 185 13 chr11 91185383 91185540 -57597932 + MSTB LTR MaLR 242 425 -1 2333 92 0 0 chr11 91185916 91186221 -57597251 + AluSq SINE Alu 1 305 -8 2050 116 17 3 chr11 91186836 91187129 -57596343 - AluSx SINE Alu -15 297 1 243 159 0 0 chr11 91188308 91188352 -57595120 - L1MB2 LINE L1 -1 6170 6127 977 79 0 0 chr11 91188353 91188480 -57594992 - AluSp/q SINE Alu -8 305 179 22 0 0 0 chr11 91189080 91189102 -57594370 + AT_rich Low_complexity Low_complexity 1 22 0 1731 153 0 47 chr11 91189534 91189854 -57593618 + AluJo SINE Alu 8 312 0 227 256 90 13 chr11 91189882 91189960 -57593512 + L1ME LINE L1 5559 5642 -479 221 197 33 0 chr11 91189986 91190047 -57593425 + (CAGAGA)n Simple_repeat Simple_repeat 4 66 0 1231 163 68 16 chr11 91190273 91190524 -57592948 - MER58B DNA MER1_type 0 341 78 439 252 36 0 chr11 91190579 91190690 -57592782 - L2 LINE L2 -8 3305 3191 899 352 137 10 chr11 91192624 91193309 -57590163 + L2 LINE L2 568 1339 -1975 1775 130 14 7 chr11 91193447 91193740 -57589732 + AluSg SINE Alu 1 295 -15 480 219 142 47 chr11 91194000 91194169 -57589303 - MIR SINE MIR -12 250 66 870 201 24 75 chr11 91194290 91194544 -57588928 + L1MC4 LINE L1 7799 8039 -3 193 292 42 52 chr11 91194575 91194671 -57588801 - MIR SINE MIR -157 105 11 312 319 124 43 chr11 91194879 91195064 -57588408 + L1MC/D LINE L1 5552 5751 -2057 2004 126 3 16 chr11 91195108 91195417 -57588055 + AluSx SINE Alu 1 305 -7 3520 217 20 22 chr11 91196697 91197576 -57585896 + L1MB7 LINE L1 4453 5330 -816 1155 230 4 12 chr11 91197577 91197825 -57585647 + AluJo SINE Alu 1 246 -66 3933 159 49 40 chr11 91197848 91198701 -57584771 + L1MB7 LINE L1 5316 6176 -8 198 0 0 0 chr11 91198986 91199008 -57584464 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 322 230 160 30 chr11 91199821 91199921 -57583551 - L2 LINE L2 -1 3312 3200 1630 138 28 28 chr11 91200356 91200638 -57582834 + AluJo SINE Alu 1 282 -30 279 143 0 0 chr11 91200642 91200691 -57582781 + AluJo SINE Alu 248 296 -6 190 247 0 82 chr11 91201371 91201444 -57582028 + L2 LINE L2 2989 3055 -217 2259 93 0 0 chr11 91201630 91201930 -57581542 + AluSc SINE Alu 1 300 -9 22 0 0 0 chr11 91202370 91202392 -57581080 + AT_rich Low_complexity Low_complexity 1 22 0 21 89 0 0 chr11 91203482 91203538 -57579934 + AT_rich Low_complexity Low_complexity 1 56 0 183 200 44 22 chr11 91203552 91203597 -57579875 + L2 LINE L2 3191 3236 -77 29 0 0 0 chr11 91204567 91204596 -57578876 + AT_rich Low_complexity Low_complexity 1 29 0 1731 155 0 4 chr11 91204647 91204912 -57578560 + AluSx SINE Alu 1 264 -48 180 0 0 0 chr11 91204912 91204932 -57578540 + (GAAAA)n Simple_repeat Simple_repeat 5 24 0 719 204 20 48 chr11 91205634 91205781 -57577691 + AluJo SINE Alu 4 146 -166 2072 134 0 7 chr11 91205911 91206209 -57577263 + AluSx SINE Alu 2 297 -15 1684 199 3 3 chr11 91206267 91206564 -57576908 + AluJo SINE Alu 3 299 -13 2108 111 0 20 chr11 91207064 91207370 -57576102 + AluSx SINE Alu 1 300 -12 21 0 0 0 chr11 91207470 91207491 -57575981 + AT_rich Low_complexity Low_complexity 1 21 0 1729 135 46 14 chr11 91207514 91207796 -57575676 + AluJo SINE Alu 13 303 -9 198 0 0 0 chr11 91209620 91209642 -57573830 + (T)n Simple_repeat Simple_repeat 1 22 0 215 170 21 0 chr11 91210945 91210992 -57572480 + CT-rich Low_complexity Low_complexity 1 48 0 263 236 42 0 chr11 91211009 91211081 -57572391 + CT-rich Low_complexity Low_complexity 3 77 0 265 326 185 5 chr11 91211673 91211857 -57571615 + MIR SINE MIR 34 250 -12 607 229 8 0 chr11 91211882 91212004 -57571468 + FLAM_A SINE Alu 1 123 -10 735 268 91 14 chr11 91212306 91212526 -57570946 + MIR SINE MIR 26 262 0 2793 19 0 0 chr11 91212962 91213274 -57570198 + AluYb8 SINE Alu 1 312 -6 206 399 89 6 chr11 91214613 91214781 -57568691 - L3 LINE CR1 -11 1566 1385 29 0 0 0 chr11 91215779 91215808 -57567664 + AT_rich Low_complexity Low_complexity 1 29 0 2789 16 3 0 chr11 91216914 91217226 -57566246 + AluYb8 SINE Alu 3 315 -3 2125 98 17 10 chr11 91218027 91218323 -57565149 - AluSx SINE Alu -14 298 1 236 224 0 0 chr11 91218323 91218363 -57565109 - AluJ/monomer SINE Alu -259 44 2 305 254 88 35 chr11 91219258 91219372 -57564100 - MIR3 SINE MIR -2 206 87 222 231 256 0 chr11 91219388 91219466 -57564006 - L2 LINE L2 -5 3267 3170 231 69 0 0 chr11 91220067 91220096 -57563376 + Alu SINE Alu 85 113 -20 746 199 64 12 chr11 91220350 91220521 -57562951 + FAM SINE Alu 1 49 0 220 191 0 0 chr11 91221305 91221347 -57562125 + MIR SINE MIR 211 252 -10 22 0 0 0 chr11 91221795 91221817 -57561655 + AT_rich Low_complexity Low_complexity 1 22 0 1756 143 44 14 chr11 91223641 91223935 -57559537 - AluJo SINE Alu -9 303 1 714 316 32 12 chr11 91224305 91224558 -57558914 - MIR SINE MIR -2 260 3 407 220 55 0 chr11 91224708 91224799 -57558673 + MER82 DNA MER2_type 1 96 -557 371 297 44 47 chr11 91224812 91225000 -57558472 - MIR SINE MIR -18 190 3 812 221 54 20 chr11 91225029 91225233 -57558239 + MER82 DNA MER2_type 443 653 0 2168 119 3 0 chr11 91225740 91226051 -57557421 - AluSq SINE Alu -1 312 1 24 0 0 0 chr11 91226774 91226798 -57556674 + AT_rich Low_complexity Low_complexity 1 24 0 2346 112 0 0 chr11 91229362 91229667 -57553805 + AluSx SINE Alu 1 305 -7 1406 140 72 108 chr11 91231594 91231929 -57551543 - MER44D DNA MER2_type 0 609 17 24 0 0 0 chr11 91232483 91232507 -57550965 + AT_rich Low_complexity Low_complexity 1 24 0 2049 138 0 0 chr11 91233174 91233472 -57550000 + AluSq SINE Alu 1 298 -15 1933 163 0 0 chr11 91233498 91233799 -57549673 - AluJb SINE Alu -7 305 5 1764 128 49 0 chr11 91234457 91234723 -57548749 - AluSx SINE Alu -33 279 1 521 322 85 0 chr11 91235008 91235207 -57548265 + L2 LINE L2 3098 3313 0 23 0 0 0 chr11 91235410 91235433 -57548039 + AT_rich Low_complexity Low_complexity 1 23 0 843 182 0 15 chr11 91235438 91235570 -57547902 + AluJo SINE Alu 1 130 -172 450 0 0 0 chr11 91236259 91236309 -57547163 + (TG)n Simple_repeat Simple_repeat 2 51 0 1439 159 171 0 chr11 91236945 91237203 -57546269 - AluJo SINE Alu 0 302 1 207 191 0 0 chr11 91237496 91237543 -57545929 + T-rich Low_complexity Low_complexity 2 48 0 1128 218 105 87 chr11 91238202 91238648 -57544824 - MLT1C LTR MaLR -5 462 9 277 304 51 38 chr11 91238648 91238806 -57544666 + MIR SINE MIR 57 216 -46 852 218 0 0 chr11 91238887 91239029 -57544443 + AluJo SINE Alu 140 281 -31 2261 93 13 13 chr11 91239136 91239446 -57544026 + AluSg SINE Alu 1 310 0 899 208 16 31 chr11 91239885 91240214 -57543258 - MSTD LTR MaLR 0 396 1 293 195 73 122 chr11 91240685 91240808 -57542664 - MIR SINE MIR -18 244 128 249 166 2 31 chr11 91241263 91241327 -57542145 + FLAM_A SINE Alu 75 133 0 663 103 0 0 chr11 91241860 91241947 -57541525 - AluSg SINE Alu -222 88 2 603 217 31 164 chr11 91242301 91242529 -57540943 + MIR SINE MIR 7 191 -71 2238 104 0 0 chr11 91242529 91242816 -57540656 - AluSx SINE Alu -25 287 1 603 217 31 164 chr11 91242816 91242873 -57540599 + MIR SINE MIR 191 254 -8 715 57 0 0 chr11 91243102 91243190 -57540282 - L1PA5 LINE L1 -1 6153 6066 2759 124 0 0 chr11 91243944 91244308 -57539164 + THE1B LTR MaLR 1 364 0 372 266 21 0 chr11 91244575 91244669 -57538803 - MIR3 SINE MIR -15 193 98 387 159 29 0 chr11 91244779 91244848 -57538624 - MIR SINE MIR -81 181 111 184 311 68 14 chr11 91244911 91244985 -57538487 - L2 LINE L2 -27 3245 3168 404 219 27 0 chr11 91245490 91245563 -57537909 + MER58 DNA MER1_type 1 75 -266 245 130 0 0 chr11 91245574 91245620 -57537852 - LTR66 LTR ERVL -171 439 394 767 137 0 17 chr11 91245629 91245746 -57537726 - AluSg/x SINE Alu -2 307 193 448 228 47 0 chr11 91245746 91245895 -57537577 + MER58 DNA MER1_type 72 227 -2193 373 359 72 0 chr11 91246087 91246254 -57537218 - MIR3 SINE MIR -11 197 19 1719 185 3 25 chr11 91248377 91248691 -57534781 - AluJb SINE Alu -5 307 1 396 249 126 52 chr11 91248719 91248837 -57534635 - L1ME4a LINE L1 -1 6120 6012 1845 168 0 16 chr11 91248837 91249140 -57534332 - AluJb SINE Alu -14 298 1 396 249 126 52 chr11 91249140 91249290 -57534182 - L1ME4a LINE L1 -109 6012 5832 384 235 52 17 chr11 91249678 91249793 -57533679 + MIR3 SINE MIR 85 203 -5 21 0 0 0 chr11 91249984 91250005 -57533467 + AT_rich Low_complexity Low_complexity 1 21 0 2441 81 7 0 chr11 91250085 91250395 -57533077 - AluSp SINE Alu -1 312 1 1941 153 3 34 chr11 91250421 91250741 -57532731 + AluJo SINE Alu 1 310 -2 1123 141 0 12 chr11 91250931 91251094 -57532378 + FRAM SINE Alu 1 160 -16 862 150 0 23 chr11 91251338 91251471 -57532001 + FLAM_C SINE Alu 1 130 -3 396 267 0 38 chr11 91252434 91252539 -57530933 - MIR SINE MIR -65 143 43 971 122 0 0 chr11 91252642 91252773 -57530699 + AluSq/x SINE Alu 1 131 -182 463 341 60 51 chr11 91252992 91253423 -57530049 - L2 LINE L2 -2 3270 2836 2177 85 43 0 chr11 91254132 91254413 -57529059 - AluSp SINE Alu -20 293 1 431 292 51 7 chr11 91254455 91254592 -57528880 - MIR SINE MIR -35 227 85 532 246 194 19 chr11 91255486 91255697 -57527775 - MIR SINE MIR -8 254 7 1492 122 36 27 chr11 91256041 91256263 -57527209 + AluSx SINE Alu 1 224 -88 281 253 0 63 chr11 91256326 91256421 -57527051 - MIR SINE MIR -52 210 122 1733 97 0 0 chr11 91256442 91256658 -57526814 + AluSq SINE Alu 1 216 -97 1947 161 0 7 chr11 91256849 91257153 -57526319 + AluSx SINE Alu 1 302 -10 247 347 66 51 chr11 91257481 91257755 -57525717 + L2 LINE L2 2810 3087 -185 1804 154 35 0 chr11 91257846 91258132 -57525340 - AluSx SINE Alu -16 296 1 198 171 0 0 chr11 91258190 91258231 -57525241 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 2198 38 52 24 chr11 91258942 91259231 -57524241 + AluY SINE Alu 1 297 -14 408 295 29 0 chr11 91259511 91259650 -57523822 + MLT1I LTR MaLR 1 143 -266 276 227 239 0 chr11 91259645 91259733 -57523739 + MLT1I LTR MaLR 301 409 0 * 281 329 171 0 chr11 91260752 91260906 -57522566 - MIR3 SINE MIR -22 186 2 494 111 0 0 chr11 91261271 91261334 -57522138 - AluS SINE Alu -247 64 2 1139 283 72 52 chr11 91261607 91261980 -57521492 - L2 LINE L2 -1 3312 2861 1773 195 94 23 chr11 91261980 91262416 -57521056 + MLT1C LTR MaLR 1 467 0 1139 283 72 52 chr11 91262416 91262639 -57520833 - L2 LINE L2 -452 2861 2644 21 57 0 0 chr11 91262786 91262821 -57520651 + AT_rich Low_complexity Low_complexity 1 35 0 362 312 88 0 chr11 91262929 91263054 -57520418 + LTR16A LTR ERVL 1 136 -314 286 288 45 36 chr11 91263608 91263719 -57519753 + MIR SINE MIR 30 141 -121 235 274 95 24 chr11 91263737 91263821 -57519651 - L2 LINE L2 -45 3227 3138 244 303 97 40 chr11 91263970 91264145 -57519327 - L2 LINE L2 -222 3050 2866 1578 259 83 9 chr11 91264403 91264858 -57518614 - LTR16C LTR ERVL 0 491 3 210 250 21 0 chr11 91265042 91265090 -57518382 + L2 LINE L2 3262 3310 -3 357 323 51 21 chr11 91265144 91265330 -57518142 + MIR SINE MIR 31 216 -46 407 337 34 31 chr11 91265442 91265792 -57517680 - LTR67 LTR ERVL -3 554 124 204 231 125 29 chr11 91266025 91266129 -57517343 - L2 LINE L2 -16 3256 3143 1515 192 17 27 chr11 91266605 91266897 -57516575 - AluJo SINE Alu -23 289 1 322 280 177 48 chr11 91266900 91267086 -57516386 + MIR SINE MIR 47 256 -6 279 304 0 0 chr11 91267819 91267888 -57515584 - L2 LINE L2 0 3313 3245 1625 199 19 6 chr11 91268471 91268787 -57514685 + MLT2D LTR ERVL 1 320 -94 2328 177 31 0 chr11 91268789 91269207 -57514265 + MSTB2 LTR MaLR 1 431 -26 431 140 0 158 chr11 91269285 91269399 -57514073 + MLT2D LTR ERVL 319 414 0 2295 94 37 0 chr11 91269788 91270086 -57513386 - AluSp SINE Alu -4 309 1 419 331 23 8 chr11 91270127 91270260 -57513212 + MIR3 SINE MIR 62 196 -12 2053 90 0 0 chr11 91270272 91270528 -57512944 - AluSx SINE Alu -2 310 55 2215 109 0 31 chr11 91271098 91271420 -57512052 - AluSx SINE Alu 0 312 1 264 255 9 170 chr11 91271505 91271717 -57511755 + MIR SINE MIR 28 152 -56 386 317 93 46 chr11 91272320 91272634 -57510838 - L2 LINE L2 -184 3088 2736 789 241 35 10 chr11 91272634 91272833 -57510639 + MER105 DNA DNA 1 204 0 386 317 93 46 chr11 91272833 91273060 -57510412 - L2 LINE L2 -536 2736 2521 2131 138 0 0 chr11 91273167 91273463 -57510009 + AluSx SINE Alu 1 296 -16 436 234 38 63 chr11 91273861 91274019 -57509453 + MIR3 SINE MIR 49 202 -6 249 295 129 11 chr11 91274484 91274574 -57508898 + MIR SINE MIR 5 103 -105 315 0 0 0 chr11 91274585 91274620 -57508852 + (TG)n Simple_repeat Simple_repeat 1 35 0 186 71 0 0 chr11 91274620 91274648 -57508824 + (CAGAGA)n Simple_repeat Simple_repeat 2 29 0 2170 110 0 0 chr11 91274666 91274948 -57508524 - AluSx SINE Alu -30 282 1 291 282 13 0 chr11 91274950 91275028 -57508444 + MIR SINE MIR 110 188 -74 330 258 72 67 chr11 91275598 91275721 -57507751 - MIR3 SINE MIR -34 174 47 311 356 83 19 chr11 91275906 91276170 -57507302 - L2 LINE L2 -484 2830 2550 2434 155 10 0 chr11 91276200 91276586 -57506886 - L1MA5 LINE L1 -2 6298 5909 1733 162 0 11 chr11 91277070 91277341 -57506131 + AluSx SINE Alu 6 273 -39 2493 68 10 0 chr11 91277364 91277672 -57505800 + AluY SINE Alu 1 311 0 21 0 0 0 chr11 91277983 91278004 -57505468 + AT_rich Low_complexity Low_complexity 1 21 0 2210 67 0 0 chr11 91278441 91278709 -57504763 + AluY SINE Alu 34 301 -10 243 333 34 8 chr11 91278959 91279076 -57504396 + L2 LINE L2 2882 3001 -271 236 255 94 81 chr11 91279628 91279777 -57503695 + L2 LINE L2 3141 3291 -22 2899 231 42 43 chr11 91279975 91280714 -57502758 - MER21B LTR ERV1 -109 754 17 297 338 91 75 chr11 91281337 91281657 -57501815 - L2 LINE L2 0 3272 2948 6660 0 0 36 chr11 91282093 91282246 -57501226 + L1PA13 LINE L1 4242 4405 -1758 252 0 0 0 chr11 91282246 91282274 -57501198 + (CA)n Simple_repeat Simple_repeat 1 28 0 6660 0 0 36 chr11 91282274 91282863 -57500609 + L1PA13 LINE L1 4405 5037 -1126 6660 92 10 18 chr11 91282863 91283236 -57500236 + L1PA13 LINE L1 5089 5463 -700 2126 134 3 0 chr11 91283236 91283526 -57499946 - AluSx SINE Alu -21 291 1 6660 92 10 18 chr11 91283526 91284231 -57499241 + L1PA13 LINE L1 5463 6162 -1 6660 0 0 36 chr11 91284231 91284248 -57499224 + L1PA13 LINE L1 5037 6162 -1 493 221 127 6 chr11 91285169 91285327 -57498145 - L1MC4a LINE L1 -1925 5883 5707 399 200 0 12 chr11 91285623 91285703 -57497769 + L2 LINE L2 3227 3305 -8 1531 108 0 0 chr11 91285783 91285978 -57497494 + AluSg SINE Alu 39 233 -77 24 0 0 0 chr11 91285978 91286002 -57497470 + AT_rich Low_complexity Low_complexity 1 24 0 194 347 71 31 chr11 91286884 91287080 -57496392 + L2 LINE L2 2601 2804 -510 21 0 0 0 chr11 91287141 91287162 -57496310 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr11 91287399 91287432 -57496040 + AT_rich Low_complexity Low_complexity 1 33 0 904 224 58 31 chr11 91287486 91287709 -57495763 - MIR SINE MIR -4 258 30 2529 125 25 5 chr11 91287719 91287952 -57495520 + L1MA6 LINE L1 5550 5796 -504 186 43 0 0 chr11 91287952 91287975 -57495497 + (TA)n Simple_repeat Simple_repeat 1 23 0 2529 125 25 5 chr11 91287975 91288134 -57495338 + L1MA6 LINE L1 5796 5950 -350 1996 138 7 3 chr11 91288135 91288426 -57495046 + AluSx SINE Alu 1 292 -20 22 0 0 0 chr11 91288432 91288454 -57495018 + AT_rich Low_complexity Low_complexity 1 22 0 505 286 22 0 chr11 91289438 91289579 -57493893 + MIR SINE MIR 32 176 -59 313 217 192 25 chr11 91289615 91289735 -57493737 + L1ME4a LINE L1 5982 6121 0 2021 141 0 0 chr11 91289770 91290060 -57493412 + AluJb SINE Alu 1 290 -22 1734 170 13 35 chr11 91290060 91290371 -57493101 + AluJo SINE Alu 1 304 -8 325 328 40 25 chr11 91291197 91291395 -57492077 + L2 LINE L2 2368 2568 -746 251 262 24 71 chr11 91291493 91291577 -57491895 - MIR SINE MIR -111 97 18 258 336 26 18 chr11 91292077 91292190 -57491282 - L2 LINE L2 -4 3268 3155 727 319 98 34 chr11 91292281 91292691 -57490781 - L3 LINE CR1 -1 1576 1141 255 368 0 26 chr11 91292947 91293061 -57490411 - L2 LINE L2 -12 3301 3191 825 135 0 45 chr11 91293673 91293806 -57489666 + FRAM SINE Alu 41 167 -9 6040 142 9 37 chr11 91293840 91294858 -57488614 - L1MC1 LINE L1 0 6333 5345 616 265 59 68 chr11 91294960 91295480 -57487992 - L1ME4a LINE L1 -94 6027 5518 295 218 27 36 chr11 91295861 91295951 -57487521 - MLT1J LTR MaLR -194 317 237 194 0 39 0 chr11 91296252 91296278 -57487194 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 254 332 67 86 chr11 91298083 91298364 -57485108 - L2 LINE L2 -249 3064 2780 316 191 147 0 chr11 91298591 91298659 -57484813 + MIR SINE MIR 67 144 -64 334 254 123 16 chr11 91298768 91298890 -57484582 + MIR SINE MIR 29 163 -99 257 268 56 70 chr11 91298942 91299084 -57484388 - MIR SINE MIR -74 188 49 263 362 134 8 chr11 91299776 91299903 -57483569 - L2 LINE L2 -9 3263 3121 368 271 199 13 chr11 91300027 91300178 -57483294 - MIR SINE MIR -19 243 65 191 368 90 36 chr11 91300277 91300500 -57482972 - L2 LINE L2 -338 2976 2742 290 114 0 45 chr11 91300548 91300592 -57482880 + MLT1D LTR MaLR 5 46 -459 732 125 17 42 chr11 91300623 91300743 -57482729 + MER45A DNA AcHobo 58 174 -4 316 339 124 11 chr11 91300865 91301042 -57482430 + MIR SINE MIR 66 262 0 808 307 96 32 chr11 91301701 91302138 -57481334 - L2 LINE L2 -818 2496 2032 1845 152 10 10 chr11 91302277 91302573 -57480899 - AluSx SINE Alu -16 296 1 2090 133 0 7 chr11 91302756 91303057 -57480415 + AluSx SINE Alu 1 299 -13 2528 135 22 0 chr11 91303082 91303438 -57480034 + THE1B LTR MaLR 1 364 0 2049 237 49 64 chr11 91303819 91304147 -57479325 + MER21B LTR ERV1 1 317 -546 2687 39 0 0 chr11 91304147 91304452 -57479020 + AluY SINE Alu 1 305 -6 2049 237 49 64 chr11 91304452 91304734 -57478738 + MER21B LTR ERV1 317 602 -261 5995 141 22 41 chr11 91304735 91305341 -57478131 + L1MA9 LINE L1 4760 5376 -936 2437 97 6 0 chr11 91305341 91305652 -57477820 + AluSp SINE Alu 1 313 0 5995 141 22 41 chr11 91305652 91306622 -57476850 + L1MA9 LINE L1 5376 6307 -5 527 250 101 34 chr11 91306632 91306840 -57476632 + MER21B LTR ERV1 589 810 -53 288 0 0 0 chr11 91306940 91306972 -57476500 + (TG)n Simple_repeat Simple_repeat 2 33 0 443 329 142 13 chr11 91307352 91307577 -57475895 + MIR SINE MIR 7 260 -2 2139 125 3 3 chr11 91307998 91308309 -57475163 + AluSx SINE Alu 1 311 -1 182 215 204 75 chr11 91308339 91308432 -57475040 - L2 LINE L2 0 3272 3168 324 348 94 0 chr11 91308499 91308637 -57474835 + MER5B DNA MER1_type 26 176 -2 212 283 185 29 chr11 91308900 91309073 -57474399 + L2 LINE L2 3112 3311 -2 913 210 26 10 chr11 91309197 91309392 -57474080 + AluJo SINE Alu 106 303 -9 27 0 0 0 chr11 91309486 91309513 -57473959 + AT_rich Low_complexity Low_complexity 1 27 0 777 150 18 0 chr11 91309547 91309660 -57473812 - AluSg/x SINE Alu -20 290 176 246 356 52 15 chr11 91309784 91309919 -57473553 - MIR SINE MIR -119 143 4 745 242 59 43 chr11 91311580 91311836 -57471636 + MIR SINE MIR 2 261 -1 2313 105 0 3 chr11 91312725 91313029 -57470443 + AluSx SINE Alu 1 303 -9 408 219 133 9 chr11 91313563 91313668 -57469804 - MLT1D LTR MaLR -387 118 1 349 302 65 77 chr11 91313917 91314461 -57469011 - L2 LINE L2 -67 3246 2719 2282 116 0 0 chr11 91314534 91314844 -57468628 + AluSx SINE Alu 1 310 -2 303 320 84 84 chr11 91315125 91315447 -57468025 - L2 LINE L2 -5 3267 2946 1455 223 27 3 chr11 91316042 91316357 -57467115 - AluJb SINE Alu 0 312 6 28 0 0 0 chr11 91316681 91316709 -57466763 + AT_rich Low_complexity Low_complexity 1 28 0 195 203 354 13 chr11 91317363 91317442 -57466030 - MER5A DNA MER1_type -80 109 4 210 37 0 0 chr11 91317545 91317572 -57465900 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 566 295 44 11 chr11 91317735 91317918 -57465554 + MIR3 SINE MIR 17 205 -3 190 302 105 0 chr11 91319553 91319639 -57463833 + L2 LINE L2 2960 3054 -218 907 180 77 11 chr11 91319762 91319945 -57463527 + MIR SINE MIR 68 262 0 205 284 0 111 chr11 91319955 91319997 -57463475 + L2 LINE L2 3201 3231 -41 333 269 138 25 chr11 91319997 91320157 -57463315 - MER5B DNA MER1_type 0 178 1 205 284 0 111 chr11 91320157 91320195 -57463277 + L2 LINE L2 3231 3272 0 846 77 0 10 chr11 91320227 91320331 -57463141 + U6 snRNA snRNA 2 104 -3 1557 154 4 0 chr11 91320878 91321112 -57462360 + AluJo SINE Alu 1 235 -77 380 198 36 9 chr11 91321335 91321416 -57462056 + L1MC/D LINE L1 4497 4583 -1563 2173 131 3 0 chr11 91321416 91321713 -57461759 + AluSx SINE Alu 1 298 -14 380 198 36 9 chr11 91321713 91321742 -57461730 + L1MC/D LINE L1 4583 4610 -1536 477 285 55 22 chr11 91321798 91322166 -57461306 + L1MC/D LINE L1 5217 5597 -743 517 290 83 30 chr11 91322263 91322432 -57461040 + MIR SINE MIR 6 183 -79 576 161 0 0 chr11 91322443 91322530 -57460942 + AluJ/FLAM SINE Alu 2 88 -224 777 149 0 85 chr11 91322770 91322911 -57460561 + FLAM_C SINE Alu 1 129 -4 2178 127 7 0 chr11 91324160 91324468 -57459004 - AluSx SINE Alu -2 310 1 861 273 62 4 chr11 91324587 91324829 -57458643 - MIR SINE MIR -2 260 5 224 323 0 0 chr11 91325877 91325939 -57457533 - L2 LINE L2 -217 3055 2994 495 45 0 0 chr11 91325939 91326005 -57457467 + (TG)n Simple_repeat Simple_repeat 2 67 0 622 202 225 6 chr11 91326163 91326336 -57457136 + MIR SINE MIR 15 225 -37 185 390 85 8 chr11 91326464 91326582 -57456890 - L2 LINE L2 -39 3233 3107 1669 208 74 108 chr11 91326937 91327300 -57456172 + MLT1F LTR MaLR 7 346 -196 838 113 0 85 chr11 91327300 91327441 -57456031 + FLAM_C SINE Alu 1 129 -4 1669 208 74 108 chr11 91327441 91327631 -57455841 + MLT1F LTR MaLR 346 541 -1 398 345 82 6 chr11 91327665 91327836 -57455636 + L2 LINE L2 3087 3270 -2 488 307 68 11 chr11 91327894 91328070 -57455402 - MIR SINE MIR -76 186 1 180 342 0 40 chr11 91328347 91328423 -57455049 - MIR SINE MIR -117 91 19 370 245 31 31 chr11 91329648 91329746 -57453726 + MIR SINE MIR 57 154 -108 1799 160 0 7 chr11 91329763 91330051 -57453421 - AluJb SINE Alu -26 286 1 2082 132 0 0 chr11 91330590 91330878 -57452594 - AluSx SINE Alu -24 288 1 209 343 19 65 chr11 91331157 91331265 -57452207 - MIR SINE MIR -86 122 20 494 273 135 100 chr11 91331566 91331877 -57451595 - L2 LINE L2 -13 3259 2938 194 146 62 0 chr11 91332605 91332653 -57450819 + L2 LINE L2 3263 3313 0 6821 68 24 11 chr11 91332746 91333832 -57449640 + L1PA13 LINE L1 5048 6144 -19 717 223 0 8 chr11 91334284 91334405 -57449067 + FLAM_A SINE Alu 1 120 -13 686 204 13 0 chr11 91334407 91334564 -57448908 + (TATG)n Simple_repeat Simple_repeat 2 160 0 220 318 0 12 chr11 91334985 91335070 -57448402 + MIR3 SINE MIR 2 85 -123 1091 188 0 0 chr11 91335208 91335400 -57448072 + AluSg/x SINE Alu 119 310 0 981 234 13 89 chr11 91336242 91336380 -57447092 + AluJo SINE Alu 1 148 -154 2275 77 3 3 chr11 91336380 91336667 -57446805 - AluSc SINE Alu -22 287 1 981 234 13 89 chr11 91336667 91336682 -57446790 + AluJo SINE Alu 148 163 -139 2310 78 0 0 chr11 91336682 91336965 -57446507 - AluSg SINE Alu -13 297 15 981 234 13 89 chr11 91336965 91337126 -57446346 + AluJo SINE Alu 163 292 -10 1747 179 4 4 chr11 91337453 91337732 -57445740 + AluSx SINE Alu 1 279 -33 333 0 0 0 chr11 91339621 91339658 -57443814 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 216 306 0 0 chr11 91340115 91340177 -57443295 + L3 LINE CR1 1508 1569 -8 180 111 0 0 chr11 91340944 91340971 -57442501 + (TCC)n Simple_repeat Simple_repeat 2 28 0 1054 198 9 9 chr11 91341637 91341854 -57441618 + AluJo SINE Alu 1 217 -95 2489 75 0 3 chr11 91341859 91342167 -57441305 - AluSq SINE Alu -6 307 1 3976 177 38 27 chr11 91342167 91343036 -57440436 - L1MC1 LINE L1 -205 6128 5245 2114 136 0 7 chr11 91343036 91343346 -57440126 - AluSx SINE Alu -4 308 1 3976 177 38 27 chr11 91343346 91343734 -57439738 - L1MC1 LINE L1 -1088 5245 4863 1316 179 191 17 chr11 91343738 91344175 -57439297 + Charlie1b DNA MER1_type 1 508 -15 1354 153 165 4 chr11 91344630 91344872 -57438600 - AluJo SINE Alu -31 281 1 200 268 113 31 chr11 91345063 91345160 -57438312 + L2 LINE L2 3162 3266 -6 274 200 80 67 chr11 91345555 91345630 -57437842 - MER91C DNA MER1_type -35 105 30 1848 165 52 0 chr11 91346452 91346779 -57436693 + MER2 DNA MER2_type 1 344 0 191 36 36 0 chr11 91346809 91346837 -57436635 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 2310 75 3 7 chr11 91346840 91347134 -57436338 - AluSg SINE Alu -17 293 1 3854 181 46 32 chr11 91347211 91348232 -57435240 - L1MB7 LINE L1 -19 6165 5123 1988 137 10 10 chr11 91348232 91348531 -57434941 - AluSx SINE Alu -9 303 5 3854 181 46 32 chr11 91348531 91348693 -57434779 - L1MB7 LINE L1 -1061 5123 4965 2185 108 10 0 chr11 91349043 91349338 -57434134 - AluSq SINE Alu -15 298 1 932 239 75 18 chr11 91349344 91349570 -57433902 - MIR SINE MIR -21 241 3 356 324 91 32 chr11 91350562 91350815 -57432657 - L1ME LINE L1 -348 5822 5555 1286 144 56 128 chr11 91350980 91351300 -57432172 - AluJo SINE Alu -15 297 1 198 151 131 0 chr11 91352081 91352138 -57431334 - MIR SINE MIR -64 144 71 553 160 77 124 chr11 91352232 91352306 -57431166 - MER20 DNA MER1_type -3 216 140 1998 125 6 16 chr11 91352306 91352617 -57430855 - AluSx SINE Alu -4 308 1 553 160 77 124 chr11 91352617 91352711 -57430761 - MER20 DNA MER1_type -79 140 56 1839 171 0 10 chr11 91354311 91354615 -57428857 + AluJo SINE Alu 1 301 -11 1951 136 0 14 chr11 91355818 91356113 -57427359 + AluSx SINE Alu 1 291 -21 272 183 28 28 chr11 91356748 91356819 -57426653 + (TATATG)n Simple_repeat Simple_repeat 4 74 0 911 258 76 60 chr11 91356846 91357265 -57426207 + L2 LINE L2 2852 3277 -36 2386 92 0 13 chr11 91359139 91359453 -57424019 + AluSx SINE Alu 1 310 -2 720 183 0 63 chr11 91360297 91360439 -57423033 + FLAM_C SINE Alu 1 133 0 2132 89 7 17 chr11 91360444 91360737 -57422735 - AluSx SINE Alu -22 290 1 407 176 0 0 chr11 91360738 91360812 -57422660 + AluJ/FRAM SINE Alu 227 300 -12 22 0 0 0 chr11 91361523 91361545 -57421927 + AT_rich Low_complexity Low_complexity 1 22 0 1704 169 32 7 chr11 91363165 91363449 -57420023 + AluJb SINE Alu 1 291 -21 1267 160 90 59 chr11 91364799 91365087 -57418385 + AluJb SINE Alu 1 297 -15 1719 127 108 0 chr11 91365098 91365366 -57418106 - AluSx SINE Alu -15 297 1 777 121 185 13 chr11 91365742 91365899 -57417573 - MSTB LTR MaLR -1 425 242 254 200 18 0 chr11 91366790 91366845 -57416627 + L1ME LINE L1 5593 5648 -473 7338 34 6 2 chr11 91366864 91368072 -57415400 + L1PA4 LINE L1 4942 6152 -3 197 267 76 53 chr11 91368090 91368221 -57415251 - L2 LINE L2 -1111 2203 2070 678 257 221 27 chr11 91368486 91369044 -57414428 - L2 LINE L2 -1 3312 2655 519 168 56 99 chr11 91369348 91369473 -57413999 + MIR SINE MIR 65 183 -79 2122 121 7 10 chr11 91369473 91369780 -57413692 - AluSx SINE Alu -6 306 1 519 168 56 99 chr11 91369780 91369815 -57413657 + MIR SINE MIR 183 218 -44 822 241 80 9 chr11 91369859 91370083 -57413389 + MIR SINE MIR 2 241 -21 1148 229 4 4 chr11 91370519 91370763 -57412709 - AluJo SINE Alu -2 310 67 22 0 0 0 chr11 91371733 91371755 -57411717 + AT_rich Low_complexity Low_complexity 1 22 0 1426 181 59 28 chr11 91372471 91372758 -57410714 + AluJb SINE Alu 5 300 -2 1653 147 24 34 chr11 91372881 91373174 -57410298 + AluJb SINE Alu 1 290 -22 21 71 0 0 chr11 91373208 91373250 -57410222 + AT_rich Low_complexity Low_complexity 1 42 0 2303 75 10 7 chr11 91373253 91373545 -57409927 + AluSc SINE Alu 1 293 -16 27 49 0 0 chr11 91376687 91376728 -57406744 + GC_rich Low_complexity Low_complexity 1 41 0 224 311 0 0 chr11 91377236 91377297 -57406175 + C-rich Low_complexity Low_complexity 6 66 0 232 152 15 45 chr11 91377457 91377523 -57405949 + (CGGGG)n Simple_repeat Simple_repeat 3 66 0 531 309 133 51 chr11 91379280 91379769 -57403703 + L2 LINE L2 2293 2821 -493 950 195 0 0 chr11 91380414 91380573 -57402899 + FRAM SINE Alu 2 160 -16 193 220 102 51 chr11 91380634 91380693 -57402779 - L2 LINE L2 0 3313 3252 2384 77 7 0 chr11 91381027 91381325 -57402147 - AluY SINE Alu -11 300 1 262 279 64 8 chr11 91381332 91381434 -57402038 - MIR SINE MIR -95 113 1 396 308 21 49 chr11 91381463 91381606 -57401866 - L2 LINE L2 -4 3309 3171 1817 176 26 6 chr11 91381920 91382260 -57401212 + MER7A DNA MER2_type 2 346 0 230 233 151 0 chr11 91382317 91382403 -57401069 - MIR SINE MIR 0 262 164 1069 238 65 27 chr11 91382419 91382713 -57400759 + MLT1J2 LTR MaLR 25 329 -121 2163 111 0 3 chr11 91382749 91383047 -57400425 + AluSx SINE Alu 2 298 -14 464 311 8 15 chr11 91383110 91383242 -57400230 - MIR SINE MIR -113 149 19 1643 196 0 4 chr11 91383599 91383879 -57399593 + AluJo SINE Alu 6 284 -28 359 21 21 0 chr11 91383879 91383927 -57399545 + (CA)n Simple_repeat Simple_repeat 2 50 0 212 285 211 16 chr11 91384211 91384334 -57399138 + MIR SINE MIR 88 234 -28 263 342 0 0 chr11 91384353 91384432 -57399040 - L2 LINE L2 -10 3262 3184 527 288 61 31 chr11 91384847 91385076 -57398396 + MER110-int LTR ERV1 4411 4646 -1 515 238 29 52 chr11 91385421 91385587 -57397885 + MER110 LTR ERV1 318 479 -12 256 205 48 72 chr11 91385587 91385670 -57397802 + MLT1D LTR MaLR 3 83 -422 2295 116 3 0 chr11 91385678 91385988 -57397484 + AluSx SINE Alu 1 311 -1 1273 134 0 0 chr11 91385988 91386167 -57397305 + AluSg/x SINE Alu 134 312 0 1025 211 114 82 chr11 91386183 91386585 -57396887 + MLT1D LTR MaLR 91 505 0 671 267 20 71 chr11 91386607 91386903 -57396569 - L2 LINE L2 -614 2700 2420 11448 185 37 34 chr11 91387584 91388269 -57395203 - L1MC1 LINE L1 0 6613 5932 2107 112 23 3 chr11 91388269 91388572 -57394900 - AluSx SINE Alu -3 309 1 11448 185 37 34 chr11 91388572 91389086 -57394386 - L1MC1 LINE L1 -681 5932 5421 2174 140 0 0 chr11 91389086 91389394 -57394078 - AluJb SINE Alu -4 308 1 11448 185 37 34 chr11 91389394 91389549 -57393923 - L1MC1 LINE L1 -1192 5421 5268 1823 188 54 17 chr11 91389549 91389901 -57393571 + MLT1A1 LTR MaLR 1 365 0 11448 185 37 34 chr11 91389901 91391505 -57391967 - L1MC1 LINE L1 -1345 5268 3670 2157 109 0 0 chr11 91391505 91391811 -57391661 - AluSg SINE Alu 0 306 1 11448 185 37 34 chr11 91391811 91393000 -57390472 - L1MC1 LINE L1 -2943 3670 2486 1944 145 7 13 chr11 91393000 91393310 -57390162 - AluSx SINE Alu -4 308 1 11448 185 37 34 chr11 91393310 91393985 -57389487 - L1MC1 LINE L1 -4127 2486 1815 2334 116 0 7 chr11 91393985 91394295 -57389177 - AluSx SINE Alu -4 308 1 11448 185 37 34 chr11 91394295 91395332 -57388140 - L1MC1 LINE L1 -4798 1815 529 1671 225 85 92 chr11 91395357 91395931 -57387541 + MER21B LTR ERV1 1 570 -293 661 89 0 0 chr11 91395931 91396084 -57387388 - AluSg/x SINE Alu 0 355 203 805 235 46 32 chr11 91396086 91396303 -57387169 + MER21B LTR ERV1 562 781 -82 2666 165 17 51 chr11 91396312 91396788 -57386684 - L1MC1 LINE L1 -5899 527 69 2333 91 0 3 chr11 91396788 91397084 -57386388 - AluSg SINE Alu -14 296 2 2666 165 17 51 chr11 91397084 91397135 -57386337 - L1MC1 LINE L1 -6357 69 18 2332 109 0 0 chr11 91398303 91398606 -57384866 + AluSx SINE Alu 1 303 -9 289 314 12 0 chr11 91398639 91398725 -57384747 - MIR3 SINE MIR -38 170 84 253 138 31 46 chr11 91398965 91399030 -57384442 + MER116 DNA Mariner 2 65 -15 2069 141 13 3 chr11 91399031 91399337 -57384135 + AluSx SINE Alu 3 311 -1 278 235 12 0 chr11 91399340 91399421 -57384051 + A-rich Low_complexity Low_complexity 3 84 0 422 264 0 0 chr11 91399431 91399518 -57383954 + MLT1F LTR MaLR 1 87 -455 2489 203 19 13 chr11 91399565 91400034 -57383438 + MLT1F LTR MaLR 1 472 -70 962 165 11 17 chr11 91400037 91400213 -57383259 - FAM SINE Alu -7 42 1 257 62 0 0 chr11 91400223 91400255 -57383217 + MLT1F LTR MaLR 482 513 -29 1492 189 21 21 chr11 91400292 91400583 -57382889 + AluJo SINE Alu 1 291 -21 350 278 0 0 chr11 91400585 91400675 -57382797 + L1MC4 LINE L1 6614 6703 -1339 932 160 0 0 chr11 91400688 91400819 -57382653 + AluJo/FLAM SINE Alu 1 131 -171 2247 85 29 13 chr11 91400821 91401127 -57382345 + AluY SINE Alu 1 311 0 26 0 0 0 chr11 91401809 91401835 -57381637 + AT_rich Low_complexity Low_complexity 1 26 0 555 228 13 60 chr11 91401896 91402045 -57381427 - Zaphod DNA AcHobo -1 4030 3889 * 2867 229 55 80 chr11 91402044 91402279 -57381193 - Zaphod DNA AcHobo -2957 1074 835 646 183 0 0 chr11 91402279 91402383 -57381089 + U13 snRNA snRNA 1 104 0 2867 229 55 80 chr11 91402383 91402794 -57380678 - Zaphod DNA AcHobo -3196 835 415 1888 137 47 7 chr11 91402794 91403094 -57380378 + AluSx SINE Alu 1 312 0 2867 229 55 80 chr11 91403094 91403458 -57380014 - Zaphod DNA AcHobo -3616 415 90 2332 67 0 3 chr11 91403458 91403767 -57379705 + AluY SINE Alu 1 308 0 2867 229 55 80 chr11 91403767 91403854 -57379618 - Zaphod DNA AcHobo -3941 90 2 22 0 0 54 chr11 91403918 91403938 -57379534 + AT_rich Low_complexity Low_complexity 1 20 -15 1868 160 11 0 chr11 91403938 91404225 -57379247 - AluSx SINE Alu -22 290 1 22 0 0 54 chr11 91404225 91404241 -57379231 + AT_rich Low_complexity Low_complexity 20 35 0 783 233 36 43 chr11 91404248 91404501 -57378971 + MIR SINE MIR 1 251 -11 712 297 95 0 chr11 91404586 91404818 -57378654 - MIR SINE MIR -1 261 8 211 263 242 0 chr11 91404924 91405023 -57378449 + L2 LINE L2 3189 3311 -2 1796 169 3 14 chr11 91405066 91405362 -57378110 - AluJo SINE Alu -19 293 1 801 233 5 43 chr11 91405465 91405675 -57377797 + AluJo SINE Alu 86 287 -25 1150 276 81 39 chr11 91406335 91406769 -57376703 + MLT1J LTR MaLR 25 476 -35 2309 109 0 0 chr11 91407203 91407505 -57375967 - AluSq SINE Alu -11 302 1 413 285 66 24 chr11 91408210 91408392 -57375080 + MIR3 SINE MIR 9 190 -62 22 0 0 0 chr11 91408415 91408437 -57375035 + AT_rich Low_complexity Low_complexity 1 22 0 393 117 0 0 chr11 91408486 91408546 -57374926 + (TCCC)n Simple_repeat Simple_repeat 4 63 0 1548 134 0 0 chr11 91408580 91408803 -57374669 - AluSg/x SINE Alu -7 305 83 690 190 0 70 chr11 91408804 91408905 -57374567 - AluJo/FLAM SINE Alu -169 133 43 2170 99 14 10 chr11 91408905 91409197 -57374275 - AluSx SINE Alu -19 293 1 690 190 0 70 chr11 91409197 91409237 -57374235 - AluJo/FLAM SINE Alu -259 43 2 301 283 88 26 chr11 91410132 91410245 -57373227 - MIR3 SINE MIR -2 206 87 221 209 233 35 chr11 91410252 91410338 -57373134 - L2 LINE L2 0 3272 3170 236 69 0 0 chr11 91410938 91410967 -57372505 + Alu SINE Alu 86 114 -188 838 207 65 0 chr11 91411221 91411390 -57372082 + FAM SINE Alu 1 49 0 223 191 0 0 chr11 91412176 91412218 -57371254 + MIR SINE MIR 211 252 -10 11998 20 1 0 chr11 91412591 91414663 -57368809 + L1PA3 LINE L1 4080 6152 -3 186 43 0 0 chr11 91414667 91414690 -57368782 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr11 91414949 91414972 -57368500 + AT_rich Low_complexity Low_complexity 1 23 0 30 27 0 0 chr11 91415005 91415042 -57368430 + AT_rich Low_complexity Low_complexity 1 37 0 348 295 9 27 chr11 91415119 91415231 -57368241 - MER5A DNA MER1_type -29 160 51 207 369 31 23 chr11 91415135 91415265 -57368207 + MER5A DNA MER1_type 56 186 -3 * 219 277 15 109 chr11 91415375 91415512 -57367960 - MIR SINE MIR -70 192 69 21 0 0 0 chr11 91416385 91416406 -57367066 + AT_rich Low_complexity Low_complexity 1 21 0 2624 92 113 15 chr11 91417219 91417609 -57365863 - MSTA LTR MaLR 0 428 1 265 320 0 39 chr11 91417661 91417814 -57365658 + CT-rich Low_complexity Low_complexity 2 148 0 257 147 0 15 chr11 91417830 91417898 -57365574 + (CCCCCT)n Simple_repeat Simple_repeat 4 70 0 6027 66 18 52 chr11 91417898 91418014 -57365458 + SVA Other Other 1 868 -1275 6027 63 20 53 chr11 91418014 91418912 -57364560 + SVA Other Other 1 868 -518 1141 92 41 87 chr11 91418978 91419609 -57363863 + SVA Other Other 536 866 -520 6670 66 14 42 chr11 91419622 91420606 -57362866 + SVA Other Other 430 1386 0 22 35 0 0 chr11 91420611 91420640 -57362832 + AT_rich Low_complexity Low_complexity 1 29 0 2083 145 0 0 chr11 91420640 91420964 -57362508 - L1MA5A LINE L1 -6 6291 5968 27 81 0 0 chr11 91421216 91421278 -57362194 + AT_rich Low_complexity Low_complexity 1 62 0 21 0 0 0 chr11 91421405 91421426 -57362046 + AT_rich Low_complexity Low_complexity 1 21 0 939 127 15 0 chr11 91421426 91421560 -57361912 - AluJo SINE Alu -176 136 1 1470 316 44 27 chr11 91422181 91422938 -57360534 + L2 LINE L2 2289 3068 -245 1832 169 10 16 chr11 91423034 91423347 -57360125 - AluSx SINE Alu -1 311 1 344 237 99 115 chr11 91423401 91423654 -57359818 + L2 LINE L2 3065 3313 0 523 294 167 18 chr11 91424174 91424402 -57359070 - MIR SINE MIR 0 262 1 317 271 70 122 chr11 91425210 91425439 -57358033 + MIR SINE MIR 46 262 0 442 261 43 36 chr11 91425805 91425943 -57357529 - MIR SINE MIR -62 146 14 290 253 81 35 chr11 91426172 91426285 -57357187 - MIR3 SINE MIR -23 185 64 222 259 0 0 chr11 91426286 91426340 -57357132 - L3 LINE CR1 -862 715 662 279 270 24 46 chr11 91426401 91426547 -57356925 + MIR SINE MIR 42 183 -62 354 246 65 0 chr11 91427057 91427173 -57356299 + MIR SINE MIR 74 200 -62 2004 124 3 3 chr11 91427879 91428221 -57355251 + AluSx SINE Alu 1 342 0 201 246 0 0 chr11 91429180 91429245 -57354227 + CT-rich Low_complexity Low_complexity 2 66 0 1907 182 7 61 chr11 91429910 91430239 -57353233 - MLT1B LTR MaLR 0 390 86 2007 102 6 67 chr11 91430239 91430553 -57352919 - AluSp SINE Alu -18 295 1 1907 182 7 61 chr11 91430553 91430635 -57352837 - MLT1B LTR MaLR -304 86 1 1230 200 47 81 chr11 91430840 91431251 -57352221 + MLT2D LTR ERVL 1 534 -20 306 256 0 13 chr11 91432763 91432841 -57350631 + MER103 DNA DNA 3 79 -87 593 213 50 99 chr11 91432845 91433047 -57350425 - L2 LINE L2 -1 3312 3121 1024 291 149 16 chr11 91433097 91433661 -57349811 - L2 LINE L2 -353 2961 2323 279 115 19 0 chr11 91433661 91433713 -57349759 - MADE1 DNA Mariner 0 80 28 40 59 0 0 chr11 91433741 91433809 -57349663 + AT_rich Low_complexity Low_complexity 1 68 0 455 249 80 45 chr11 91433809 91433898 -57349574 - L2 LINE L2 -1028 2286 2202 1904 152 7 0 chr11 91433898 91434181 -57349291 + AluSx SINE Alu 1 285 -27 455 249 80 45 chr11 91434181 91434292 -57349180 - L2 LINE L2 -1112 2202 2079 450 79 0 0 chr11 91435094 91435157 -57348315 + (TC)n Simple_repeat Simple_repeat 2 64 0 315 71 0 0 chr11 91435157 91435199 -57348273 + (CA)n Simple_repeat Simple_repeat 1 42 0 300 235 61 51 chr11 91435426 91435524 -57347948 + MIR3 SINE MIR 82 180 -28 511 311 57 24 chr11 91435718 91435930 -57347542 + MIR SINE MIR 2 220 -42 2221 100 3 7 chr11 91437058 91437359 -57346113 - AluSx SINE Alu -12 300 1 2253 92 0 10 chr11 91437374 91437677 -57345795 - AluSg SINE Alu -10 300 1 567 244 0 0 chr11 91437712 91437827 -57345645 + FRAM SINE Alu 41 155 -21 1891 145 0 22 chr11 91438158 91438475 -57344997 + AluSx SINE Alu 1 310 -2 2287 82 0 3 chr11 91438625 91438917 -57344555 + AluSg1 SINE Alu 1 291 -18 2015 145 3 3 chr11 91438962 91439252 -57344220 + AluSx SINE Alu 7 296 -16 856 213 24 0 chr11 91439380 91439544 -57343928 + FAM SINE Alu 4 171 -4 2145 73 0 4 chr11 91439884 91440156 -57343316 + AluY SINE Alu 35 305 -6 785 114 8 38 chr11 91440499 91440631 -57342841 - FLAM_C SINE Alu -5 128 1 22 0 0 0 chr11 91441326 91441348 -57342124 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr11 91442510 91442540 -57340932 + AT_rich Low_complexity Low_complexity 1 30 0 188 128 77 0 chr11 91443076 91443115 -57340357 + L3b LINE CR1 1181 1222 -361 488 207 22 30 chr11 91443127 91443262 -57340210 - MER94 DNA DNA 0 134 1 372 262 154 47 chr11 91444168 91444317 -57339155 - L2 LINE L2 -22 3291 3127 2185 113 27 27 chr11 91444769 91445106 -57338366 + MER1B DNA MER1_type 1 337 0 1040 169 0 28 chr11 91445495 91445672 -57337800 + FAM SINE Alu 4 175 0 216 0 0 0 chr11 91446205 91446229 -57337243 + (A)n Simple_repeat Simple_repeat 1 24 0 190 384 50 0 chr11 91446983 91447082 -57336390 + MIR SINE MIR 48 151 -111 228 224 0 0 chr11 91447397 91447446 -57336026 - AluJo SINE Alu -2 300 252 1198 166 0 0 chr11 91447446 91447621 -57335851 - AluJo SINE Alu -137 175 1 2295 85 0 3 chr11 91448501 91448795 -57334677 + AluSq SINE Alu 1 293 -20 2217 88 3 19 chr11 91449235 91449542 -57333930 + AluSg SINE Alu 1 302 -8 445 118 15 0 chr11 91449692 91449760 -57333712 + AluS SINE Alu 1 69 -244 180 0 0 0 chr11 91449909 91449929 -57333543 + (A)n Simple_repeat Simple_repeat 1 20 0 595 228 0 8 chr11 91450567 91450690 -57332782 - FLAM_A SINE Alu -11 122 1 2035 134 3 3 chr11 91451090 91451382 -57332090 + AluSx SINE Alu 9 300 -12 2088 135 83 6 chr11 91451750 91452098 -57331374 + THE1C LTR MaLR 1 375 0 313 211 83 90 chr11 91452586 91452742 -57330730 - L1M4c LINE L1 -5196 1188 1034 816 219 94 63 chr11 91452877 91453228 -57330244 + MER57A LTR ERV1 42 403 0 1828 173 7 0 chr11 91453283 91453567 -57329905 - AluJb SINE Alu -22 290 5 305 68 0 0 chr11 91454484 91454528 -57328944 - AluSp/q SINE Alu -8 295 252 862 99 0 0 chr11 91454529 91454640 -57328832 - AluSp SINE Alu -202 111 1 1960 108 7 4 chr11 91454752 91455021 -57328451 + AluSq SINE Alu 1 270 -43 231 36 0 0 chr11 91455130 91455158 -57328314 + (A)n Simple_repeat Simple_repeat 1 28 0 3409 162 46 36 chr11 91455159 91456047 -57327425 + L1MC1 LINE L1 5232 6128 -205 2367 78 0 3 chr11 91456047 91456343 -57327129 + AluSq SINE Alu 1 295 -18 319 314 126 11 chr11 91506762 91506937 -57276535 - MIR SINE MIR -14 248 54 189 0 0 0 chr11 91507063 91507084 -57276388 + (TAA)n Simple_repeat Simple_repeat 2 22 0 394 301 90 23 chr11 91510629 91510762 -57272710 + L2 LINE L2 3169 3310 -3 2382 120 0 0 chr11 91510814 91511123 -57272349 - AluSx SINE Alu -3 309 1 22 0 0 0 chr11 91511134 91511156 -57272316 + AT_rich Low_complexity Low_complexity 1 22 0 930 184 0 37 chr11 91511284 91511474 -57271998 + AluSg/x SINE Alu 128 310 -2 310 325 24 8 chr11 91511815 91511941 -57271531 - MIR SINE MIR -38 224 97 526 319 5 37 chr11 91512340 91512528 -57270944 + MIR3 SINE MIR 19 200 -8 2583 178 51 36 chr11 91512727 91513524 -57269948 + MER21B LTR ERV1 1 845 -18 2802 90 0 11 chr11 91513524 91513903 -57269569 - THE1C LTR MaLR 0 375 1 10042 111 7 40 chr11 91513903 91515537 -57267935 - THE1C-int LTR MaLR 0 1580 1 2828 93 0 8 chr11 91515537 91515913 -57267559 - THE1C LTR MaLR 0 375 3 629 231 140 34 chr11 91516057 91516267 -57267205 - MIR SINE MIR -31 231 3 1490 139 19 4 chr11 91518418 91518677 -57264795 + L1MD2 LINE L1 5696 5958 -401 6318 78 82 0 chr11 91518809 91520177 -57263295 - L1PA13 LINE L1 -8 6155 4722 4922 108 9 7 chr11 91520207 91521157 -57262315 + L1MA2 LINE L1 5008 5960 -342 291 67 33 0 chr11 91521164 91521224 -57262248 - L1MA1 LINE L1 -267 6035 5974 541 128 0 0 chr11 91521348 91521442 -57262030 + L1MA2 LINE L1 6051 6144 -160 21 0 0 0 chr11 91521582 91521603 -57261869 + AT_rich Low_complexity Low_complexity 1 21 0 606 227 39 0 chr11 91521604 91521732 -57261740 + FLAM_A SINE Alu 1 133 0 313 161 0 0 chr11 91521751 91521813 -57261659 + L1ME1 LINE L1 6043 6104 -62 2289 163 54 10 chr11 91521844 91522254 -57261218 + MSTA LTR MaLR 1 428 0 640 149 65 202 chr11 91522524 91522772 -57260700 + MER20 DNA MER1_type 1 214 -5 1012 186 126 83 chr11 91523102 91523474 -57259998 - MLT1B LTR MaLR 0 390 3 24 53 0 0 chr11 91523890 91523928 -57259544 + AT_rich Low_complexity Low_complexity 1 38 0 213 159 23 0 chr11 91524117 91524161 -57259311 + (TTA)n Simple_repeat Simple_repeat 2 46 0 275 274 57 117 chr11 91524510 91524861 -57258611 + HAL1 LINE L1 341 670 -1837 853 284 77 20 chr11 91524907 91525350 -57258122 + HAL1 LINE L1 1812 2279 -228 308 268 81 32 chr11 91525352 91525475 -57257997 + L1M4 LINE L1 4853 4981 -1165 1519 168 99 60 chr11 91525498 91525583 -57257889 - MER47A DNA MER2_type -1957 366 286 1886 184 7 0 chr11 91525583 91525893 -57257579 + AluJo SINE Alu 1 312 0 1519 168 99 60 chr11 91525893 91526159 -57257313 - MER47A DNA MER2_type -2037 286 1 344 292 94 18 chr11 91526191 91526362 -57257110 + L1M4 LINE L1 5067 5250 -896 534 297 84 32 chr11 91526441 91526604 -57256868 - L1MEd LINE L1 -5294 825 672 2153 125 0 26 chr11 91526604 91526917 -57256555 + AluSx SINE Alu 1 305 -7 534 297 84 32 chr11 91526917 91527096 -57256376 - L1MEd LINE L1 -5447 672 465 491 90 6 72 chr11 91527182 91527348 -57256124 + (TA)n Simple_repeat Simple_repeat 1 155 0 1232 83 0 6 chr11 91527452 91527632 -57255840 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 1666 162 0 22 chr11 91527634 91527912 -57255560 - AluJo SINE Alu -29 283 12 191 328 90 0 chr11 91527936 91528003 -57255469 + L2 LINE L2 2988 3060 -212 2040 120 4 0 chr11 91528132 91528408 -57255064 - AluSx SINE Alu -35 277 1 368 318 53 17 chr11 91528453 91528609 -57254863 - MIR SINE MIR -41 221 63 1297 142 14 24 chr11 91528623 91528834 -57254638 - AluJo SINE Alu -90 222 14 547 335 50 9 chr11 91529410 91529628 -57253844 - MIR SINE MIR -16 246 20 243 241 0 0 chr11 91530262 91530316 -57253156 + L2 LINE L2 3257 3310 -3 267 264 272 8 chr11 91530608 91530733 -57252739 - MIR SINE MIR -24 238 81 1759 183 7 7 chr11 91531275 91531575 -57251897 + AluJo SINE Alu 1 300 -12 913 137 0 0 chr11 91531584 91531715 -57251757 + AluJo SINE Alu 1 131 -171 21 0 0 0 chr11 91531851 91531872 -57251600 + AT_rich Low_complexity Low_complexity 1 21 0 6605 30 11 0 chr11 91532332 91533123 -57250349 + L1PA3 LINE L1 5353 6152 -3 338 355 30 6 chr11 91534194 91534360 -57249112 - MIR3 SINE MIR -21 187 18 2267 127 0 10 chr11 91534559 91534873 -57248599 - AluSx SINE Alu -1 311 1 273 236 0 0 chr11 91535169 91535224 -57248248 + L2 LINE L2 3259 3313 0 363 259 32 95 chr11 91535258 91535416 -57248056 - MIR3 SINE MIR -24 184 37 358 129 12 71 chr11 91535427 91535479 -57247993 - MER116 DNA Mariner 0 80 33 1807 111 70 26 chr11 91535479 91535823 -57247649 + MER46B DNA MER2_type 1 234 -2 358 129 12 71 chr11 91535823 91535855 -57247617 - MER116 DNA Mariner -47 33 1 542 285 34 17 chr11 91535985 91536164 -57247308 + MIR SINE MIR 81 262 0 806 176 0 0 chr11 91536220 91536356 -57247116 + AluJo SINE Alu 1 136 -176 575 150 0 9 chr11 91536356 91536469 -57247003 + (TA)n Simple_repeat Simple_repeat 1 112 0 896 143 100 0 chr11 91536486 91536653 -57246819 + AluJo SINE Alu 133 313 0 23 33 0 0 chr11 91536965 91536995 -57246477 + AT_rich Low_complexity Low_complexity 1 30 0 416 322 27 0 chr11 91537352 91537498 -57245974 + MIR SINE MIR 102 251 -11 285 155 0 0 chr11 91538023 91538081 -57245391 + A-rich Low_complexity Low_complexity 1 58 0 271 251 159 25 chr11 91538432 91538595 -57244877 - MIR SINE MIR -12 250 66 242 330 78 19 chr11 91538785 91538888 -57244584 - L2 LINE L2 0 3313 3205 241 164 164 49 chr11 91539082 91539143 -57244329 + L2 LINE L2 3204 3271 -1 189 0 0 0 chr11 91539199 91539220 -57244252 + (T)n Simple_repeat Simple_repeat 1 21 0 568 265 31 56 chr11 91539598 91539794 -57243678 - MIR SINE MIR -70 192 2 241 287 191 0 chr11 91541099 91541193 -57242279 + L2 LINE L2 3141 3252 -20 822 206 164 42 chr11 91542447 91542734 -57240738 + MER5C DNA MER1_type 3 324 0 201 193 325 0 chr11 91543483 91543566 -57239906 - MIR SINE MIR -71 191 82 364 339 16 38 chr11 91544139 91544325 -57239147 - MIR SINE MIR -12 250 69 455 323 115 9 chr11 91544982 91545208 -57238264 - MIR SINE MIR -12 250 1 193 299 26 26 chr11 91546094 91546171 -57237301 - L2 LINE L2 -6 3266 3190 437 264 195 0 chr11 91546363 91546522 -57236950 - MIR SINE MIR -2 260 71 183 261 77 85 chr11 91546628 91546758 -57236714 + MIR SINE MIR 117 245 -17 631 280 95 0 chr11 91546797 91546986 -57236486 + MIR SINE MIR 53 259 -3 821 174 0 15 chr11 91547120 91547252 -57236220 + FLAM_C SINE Alu 2 131 -2 349 259 7 70 chr11 91548700 91548843 -57234629 + MIR SINE MIR 108 241 -21 405 310 80 15 chr11 91550089 91550289 -57233183 + MIR SINE MIR 39 251 -11 645 293 39 102 chr11 91550298 91550633 -57232839 + L2 LINE L2 2959 3272 0 536 228 156 18 chr11 91552240 91552407 -57231065 - MIR3 SINE MIR -16 192 3 306 0 0 0 chr11 91552864 91552898 -57230574 + (A)n Simple_repeat Simple_repeat 1 34 0 470 232 82 96 chr11 91553182 91553621 -57229851 - MER115 DNA AcHobo -260 433 1 341 314 50 14 chr11 91553856 91553996 -57229476 - MIR SINE MIR -71 191 47 478 248 8 8 chr11 91554018 91554139 -57229333 + MER45A DNA AcHobo 58 178 0 22 0 0 0 chr11 91554783 91554805 -57228667 + AT_rich Low_complexity Low_complexity 1 22 0 598 303 46 8 chr11 91555027 91555268 -57228204 - MLT1L LTR MaLR -359 256 7 826 246 115 52 chr11 91555743 91556222 -57227250 + L1MC4a LINE L1 5683 6191 -1617 417 264 74 8 chr11 91556705 91556826 -57226646 - L2 LINE L2 -3 3310 3182 219 191 11 90 chr11 91557168 91557257 -57226215 + L2 LINE L2 218 299 -3015 186 291 152 13 chr11 91557265 91557344 -57226128 + MIR SINE MIR 3 92 -170 1130 255 98 115 chr11 91557423 91558877 -57224595 + L1MC4 LINE L1 6233 7710 -251 2308 114 0 3 chr11 91558877 91559185 -57224287 + AluSx SINE Alu 1 307 -5 1130 255 98 115 chr11 91559185 91559215 -57224257 + L1MC4 LINE L1 7710 7739 -222 1826 157 0 26 chr11 91559215 91559521 -57223951 + AluJb SINE Alu 4 301 -11 1130 255 98 115 chr11 91559521 91559704 -57223768 + L1MC4 LINE L1 7739 7899 -62 362 302 22 22 chr11 91559741 91559880 -57223592 - L2 LINE L2 -2778 536 398 22 0 0 0 chr11 91560074 91560096 -57223376 + AT_rich Low_complexity Low_complexity 1 22 0 15313 118 36 47 chr11 91560398 91562845 -57220627 + Tigger1 DNA MER2_type 1 2418 0 1224 220 127 16 chr11 91563246 91563569 -57219903 + MLT1F LTR MaLR 1 359 -183 8624 103 50 1 chr11 91563569 91564778 -57218694 + THE1B-int LTR MaLR 313 1580 0 2644 133 6 0 chr11 91564780 91565140 -57218332 + THE1B LTR MaLR 3 364 0 1035 238 4 17 chr11 91565141 91565376 -57218096 - MLT1B LTR MaLR -155 235 4 2448 72 7 0 chr11 91565553 91565858 -57217614 + AluY SINE Alu 1 307 -4 2225 97 0 4 chr11 91566050 91566361 -57217111 + AluSg SINE Alu 3 312 0 245 355 176 29 chr11 91566459 91566704 -57216768 + L2 LINE L2 3001 3281 -32 336 24 0 0 chr11 91566706 91566747 -57216725 + (TG)n Simple_repeat Simple_repeat 2 42 0 2871 13 0 0 chr11 91567103 91567414 -57216058 - AluY SINE Alu 0 311 1 289 312 92 22 chr11 91567830 91568144 -57215328 + L1M4 LINE L1 4577 4912 -1234 1998 128 10 39 chr11 91568155 91568461 -57215011 - AluSx SINE Alu -15 297 1 1102 114 0 7 chr11 91568772 91568921 -57214551 + AluSq SINE Alu 9 156 -157 829 108 0 0 chr11 91568949 91569060 -57214412 - FLAM_C SINE Alu -32 111 1 212 351 13 0 chr11 91569393 91569470 -57214002 - L2 LINE L2 0 3313 3236 2294 144 57 10 chr11 91569935 91570323 -57213149 - MER65A LTR ERV1 0 445 40 690 92 28 18 chr11 91570469 91570578 -57212894 - L1MA5A LINE L1 -2 6295 6186 629 244 50 10 chr11 91570607 91570808 -57212664 + L1MC4 LINE L1 7741 7949 -93 323 300 158 79 chr11 91571281 91571827 -57211645 - L1M2 LINE L1 -5741 1108 520 218 234 78 16 chr11 91573259 91573323 -57210149 + MIR SINE MIR 185 252 -10 375 23 0 0 chr11 91574616 91574660 -57208812 + (CA)n Simple_repeat Simple_repeat 1 44 0 22 0 0 0 chr11 91575172 91575194 -57208278 + AT_rich Low_complexity Low_complexity 1 22 0 429 289 35 61 chr11 91575706 91575903 -57207569 + MIR SINE MIR 1 146 -62 579 255 163 16 chr11 91577472 91577656 -57205816 + L3 LINE CR1 1364 1574 -3 575 226 105 21 chr11 91578279 91578469 -57205003 + MIR SINE MIR 53 258 -4 355 205 77 0 chr11 91579540 91579618 -57203854 + L2 LINE L2 3230 3313 0 2393 66 16 3 chr11 91580098 91580401 -57203071 - AluY SINE Alu -4 307 1 42 77 0 0 chr11 91580606 91580697 -57202775 + AT_rich Low_complexity Low_complexity 1 91 0 31 0 0 0 chr11 91581685 91581716 -57201756 + AT_rich Low_complexity Low_complexity 1 31 0 31 0 0 0 chr11 91581784 91581815 -57201657 + AT_rich Low_complexity Low_complexity 1 31 0 2312 110 0 0 chr11 91586212 91586513 -57196959 - AluSg SINE Alu -9 301 1 22098 78 6 8 chr11 91586889 91590682 -57192790 + L1PA7 LINE L1 2358 6153 -1 2916 9 0 0 chr11 91591512 91591830 -57191642 - AluYb8 SINE Alu 0 318 1 1879 148 19 0 chr11 91592844 91593161 -57190311 + L1MC1 LINE L1 6011 6333 0 2000 144 0 10 chr11 91593406 91593718 -57189754 + AluSx SINE Alu 1 309 -3 193 266 24 81 chr11 91594736 91594860 -57188612 - MIR3 SINE MIR -5 203 87 2603 42 0 7 chr11 91597005 91597311 -57186161 + AluY SINE Alu 1 304 -7 607 287 114 16 chr11 91597382 91597769 -57185703 + L1ME4a LINE L1 5512 5936 -185 1025 159 25 12 chr11 91598392 91598555 -57184917 - AluJo SINE Alu -19 293 129 27 73 0 0 chr11 91598588 91598643 -57184829 + AT_rich Low_complexity Low_complexity 1 55 0 274 295 181 0 chr11 91598702 91598807 -57184665 - L2 LINE L2 0 3272 3149 500 291 90 51 chr11 91598994 91599228 -57184244 - MIR SINE MIR -6 256 14 201 371 57 0 chr11 91599300 91599370 -57184102 - L2 LINE L2 -92 3180 3107 336 319 181 40 chr11 91599700 91600148 -57183324 - L2 LINE L2 -2108 1206 696 645 259 199 0 chr11 91600228 91600321 -57183151 - MIR SINE MIR -1 261 188 267 31 0 0 chr11 91600321 91600353 -57183119 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 645 259 199 0 chr11 91600353 91600475 -57182997 - MIR SINE MIR -74 188 3 239 295 89 27 chr11 91600530 91600642 -57182830 - L2 LINE L2 -2834 480 362 315 270 105 20 chr11 91601234 91601386 -57182086 + MLT1K LTR MaLR 144 308 -280 1924 158 0 10 chr11 91601723 91602015 -57181457 - AluJo SINE Alu -23 289 1 21 36 0 0 chr11 91602074 91602102 -57181370 + AT_rich Low_complexity Low_complexity 1 28 0 1899 107 0 8 chr11 91602493 91602754 -57180718 + AluSg SINE Alu 39 297 -13 22 35 0 0 chr11 91603076 91603105 -57180367 + AT_rich Low_complexity Low_complexity 1 29 0 326 301 48 63 chr11 91604450 91604656 -57178816 + L3 LINE CR1 1341 1543 -34 485 204 238 17 chr11 91604694 91604866 -57178606 + MIR SINE MIR 53 262 0 697 304 61 4 chr11 91605562 91605792 -57177680 + MIR SINE MIR 20 262 0 777 137 0 0 chr11 91606215 91606332 -57177140 - AluJo SINE Alu -189 123 7 1992 140 3 7 chr11 91607544 91607837 -57175635 - AluJb SINE Alu -20 292 1 292 365 65 77 chr11 91607997 91608350 -57175122 - L2 LINE L2 -2 3270 2922 1047 181 10 0 chr11 91609123 91609328 -57174144 + L1MB2 LINE L1 5949 6155 -16 2028 115 100 9 chr11 91610137 91610468 -57173004 - MER46B DNA MER2_type 0 236 1 183 250 114 0 chr11 91610628 91610672 -57172800 + MER5A DNA MER1_type 140 188 -1 564 211 94 50 chr11 91611075 91611190 -57172282 + MER5A DNA MER1_type 1 128 -61 1627 184 31 14 chr11 91611190 91611483 -57171989 - AluJb SINE Alu -14 298 1 564 211 94 50 chr11 91611483 91611547 -57171925 + MER5A DNA MER1_type 128 188 -1 810 256 92 43 chr11 91612014 91612701 -57170771 + L1MEc LINE L1 1072 1771 -4444 976 280 109 16 chr11 91612720 91613640 -57169832 + L1MEc LINE L1 1875 2841 -3374 597 145 65 16 chr11 91614413 91614537 -57168935 - L1MC1 LINE L1 0 6333 6204 25 0 0 0 chr11 91614545 91614570 -57168902 + AT_rich Low_complexity Low_complexity 1 25 0 303 269 100 31 chr11 91615153 91615283 -57168189 - MIR SINE MIR -2 260 122 306 319 179 34 chr11 91615309 91615800 -57167672 - L2 LINE L2 -56 3257 2676 2107 108 10 3 chr11 91615819 91616140 -57167332 - AluSq SINE Alu 0 313 1 353 328 46 8 chr11 91616141 91616272 -57167200 + MIR SINE MIR 79 214 -48 1881 104 31 86 chr11 91616827 91616976 -57166496 + AluSp SINE Alu 1 124 -189 234 0 0 0 chr11 91616976 91617002 -57166470 + (CA)n Simple_repeat Simple_repeat 1 26 0 1881 104 31 86 chr11 91617002 91617178 -57166294 + AluSp SINE Alu 124 308 -5 391 286 9 9 chr11 91617729 91617834 -57165638 + MIR3 SINE MIR 100 204 -4 2611 33 23 0 chr11 91617837 91618138 -57165334 - AluY SINE Alu -3 308 1 2353 105 0 0 chr11 91618679 91618983 -57164489 - AluSx SINE Alu -8 304 1 211 308 0 22 chr11 91619463 91619554 -57163918 + (TA)n Simple_repeat Simple_repeat 2 90 0 22 0 0 0 chr11 91620533 91620555 -57162917 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr11 91620755 91620791 -57162681 + AT_rich Low_complexity Low_complexity 1 36 0 300 53 0 0 chr11 91621690 91621728 -57161744 + (CA)n Simple_repeat Simple_repeat 2 39 0 1955 157 0 7 chr11 91621728 91622021 -57161451 - AluSx SINE Alu -21 291 1 489 326 163 5 chr11 91622329 91622544 -57160928 - MIR SINE MIR 0 262 14 644 276 84 22 chr11 91622552 91622777 -57160695 + MIR SINE MIR 20 258 -4 703 219 171 22 chr11 91622801 91623029 -57160443 + MIR SINE MIR 1 262 0 205 238 188 30 chr11 91623941 91624042 -57159430 - MIR3 SINE MIR -89 119 3 315 0 0 0 chr11 91624499 91624534 -57158938 + (A)n Simple_repeat Simple_repeat 1 35 0 209 314 34 68 chr11 91625076 91625194 -57158278 + MIR SINE MIR 47 160 -102 1015 179 36 0 chr11 91625202 91625370 -57158102 + FRAM SINE Alu 1 169 -7 231 303 34 0 chr11 91625498 91625587 -57157885 + MER117 DNA MER1_type 67 158 -39 249 295 31 78 chr11 91625809 91625938 -57157534 + L2 LINE L2 3189 3311 -2 399 167 10 21 chr11 91626083 91626179 -57157293 - L1MA5A LINE L1 -2 6295 6201 449 258 61 49 chr11 91626223 91626386 -57157086 - MIR SINE MIR -65 197 33 450 271 93 0 chr11 91626458 91626587 -57156885 + MIR3 SINE MIR 4 144 -64 370 300 36 0 chr11 91628061 91628171 -57155301 + MIR SINE MIR 41 154 -108 224 301 14 14 chr11 91628517 91628590 -57154882 - MIR SINE MIR -111 97 25 24 67 0 0 chr11 91628790 91628835 -57154637 + AT_rich Low_complexity Low_complexity 1 45 0 2518 83 0 3 chr11 91630544 91630856 -57152616 + AluSx SINE Alu 1 311 -1 24 0 0 0 chr11 91630902 91630926 -57152546 + AT_rich Low_complexity Low_complexity 1 24 0 422 255 124 0 chr11 91630958 91631103 -57152369 + MIR SINE MIR 66 228 -34 277 288 63 18 chr11 91631366 91631477 -57151995 + L2 LINE L2 2955 3070 -202 394 270 50 83 chr11 91631581 91631881 -57151591 + MLT1I LTR MaLR 81 370 -39 204 191 48 0 chr11 91631988 91632030 -57151442 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 1036 272 112 59 chr11 91632604 91633122 -57150350 - L2 LINE L2 -2 3311 2763 273 207 26 138 chr11 91633191 91633250 -57150222 - MIR SINE MIR -52 210 169 1892 166 0 0 chr11 91633250 91633534 -57149938 - AluSx SINE Alu -28 284 1 273 207 26 138 chr11 91633534 91633590 -57149882 - MIR SINE MIR -93 169 108 500 301 143 37 chr11 91633964 91634538 -57148934 + L2 LINE L2 2636 3272 0 214 336 88 16 chr11 91634636 91634761 -57148711 + MIR SINE MIR 49 145 -63 306 298 101 28 chr11 91635695 91635873 -57147599 - L3 LINE CR1 -259 1318 1128 375 302 153 11 chr11 91635880 91636069 -57147403 - MIR SINE MIR -31 231 16 414 259 0 0 chr11 91636103 91636184 -57147288 - MIR3 SINE MIR -116 92 12 181 260 0 0 chr11 91636686 91636736 -57146736 + L2 LINE L2 3264 3313 0 2164 104 0 0 chr11 91636821 91637109 -57146363 - AluSg SINE Alu -21 289 2 189 156 0 0 chr11 91638395 91638427 -57145045 - L2 LINE L2 -210 3062 3031 305 326 76 23 chr11 91638517 91638649 -57144823 + MER5A DNA MER1_type 30 168 -21 225 351 21 32 chr11 91638769 91638863 -57144609 - MIR SINE MIR -74 134 42 532 245 0 112 chr11 91639237 91639425 -57144047 - MER5B DNA MER1_type -4 174 8 307 261 87 26 chr11 91639467 91639582 -57143890 - MER96 DNA MER1_type? -5 170 49 452 252 118 0 chr11 91639583 91639718 -57143754 + MER96 DNA MER1_type? 25 175 0 359 278 118 14 chr11 91639961 91640105 -57143367 + MIR SINE MIR 90 248 -14 181 133 156 67 chr11 91640548 91640593 -57142879 + L2 LINE L2 3223 3271 -1 2608 170 74 2 chr11 91640713 91641184 -57142288 + MLT1D LTR MaLR 1 505 0 1063 123 0 7 chr11 91641232 91641387 -57142085 - LTR32 LTR ERVL -1 470 317 2006 110 70 37 chr11 91641422 91641749 -57141723 - LTR32 LTR ERVL -119 352 15 212 430 13 0 chr11 91642211 91642360 -57141112 + L2 LINE L2 2915 3065 -248 381 228 59 30 chr11 91642492 91642593 -57140879 + MIR SINE MIR 84 187 -75 249 326 93 20 chr11 91643236 91643390 -57140082 + MIR3 SINE MIR 2 163 -66 30 27 0 0 chr11 91643454 91643491 -57139981 + AT_rich Low_complexity Low_complexity 1 37 0 1656 170 15 4 chr11 91643491 91643756 -57139716 - AluJb SINE Alu -24 288 21 305 246 85 54 chr11 91644656 91644786 -57138686 + MIR3 SINE MIR 67 200 -8 431 282 128 69 chr11 91644915 91645234 -57138238 + L2 LINE L2 2896 3233 -39 393 331 21 7 chr11 91645858 91646003 -57137469 - MIR SINE MIR -88 174 28 350 178 147 39 chr11 91646445 91646574 -57136898 + MIR3 SINE MIR 43 185 -23 217 225 0 0 chr11 91646792 91646832 -57136640 + polypyrimidine Low_complexity Low_complexity 4 43 0 1866 154 7 0 chr11 91647058 91647359 -57136113 - AluSx SINE Alu 0 303 1 352 271 0 0 chr11 91647361 91647446 -57136026 - MIR SINE MIR -119 143 59 2268 145 42 30 chr11 91647485 91647841 -57135631 + MSTB1 LTR MaLR 1 364 -68 4392 64 14 2 chr11 91647841 91648404 -57135068 - L1PA7 LINE L1 -6 6148 5579 2268 145 42 30 chr11 91648404 91648474 -57134998 + MSTB1 LTR MaLR 364 432 0 2204 113 7 0 chr11 91649391 91649700 -57133772 - AluSq SINE Alu 0 313 3 240 111 0 0 chr11 91650088 91650124 -57133348 + (A)n Simple_repeat Simple_repeat 1 36 0 2098 114 3 21 chr11 91650296 91650620 -57132852 - AluSx SINE Alu 0 319 1 3003 178 45 4 chr11 91650979 91651512 -57131960 - MER68 LTR ERV1 -7 555 1 180 315 61 84 chr11 91652087 91652300 -57131172 + L2 LINE L2 2955 3162 -110 1754 152 0 11 chr11 91652770 91653040 -57130432 - AluJo SINE Alu -45 267 1 2105 112 20 3 chr11 91654281 91654575 -57128897 - AluSg SINE Alu -11 299 1 1304 114 0 0 chr11 91654671 91654847 -57128625 - AluSg/x SINE Alu 0 310 135 318 133 0 0 chr11 91654847 91654892 -57128580 - Alu SINE Alu -255 45 1 180 222 125 0 chr11 91654898 91654970 -57128502 + L2 LINE L2 2974 3054 -218 281 125 28 28 chr11 91655081 91655153 -57128319 + GA-rich Low_complexity Low_complexity 4 75 0 505 294 95 5 chr11 91656174 91656385 -57127087 + MIR SINE MIR 20 249 -13 1018 201 13 46 chr11 91656866 91657105 -57126367 + MIR SINE MIR 24 254 -8 893 159 0 0 chr11 91657670 91657802 -57125670 + FLAM_C SINE Alu 1 132 -1 267 259 83 19 chr11 91658569 91658677 -57124795 - L2 LINE L2 0 3313 3199 22 0 0 0 chr11 91659024 91659046 -57124426 + AT_rich Low_complexity Low_complexity 1 22 0 345 331 83 0 chr11 91659252 91659409 -57124063 - MIR3 SINE MIR -7 201 32 314 268 17 60 chr11 91659921 91660085 -57123387 - MIR SINE MIR -64 144 40 2231 100 0 0 chr11 91660521 91660827 -57122645 - AluSg SINE Alu 0 306 1 199 67 0 0 chr11 91661597 91661627 -57121845 - L2 LINE L2 0 3313 3284 180 311 0 0 chr11 91661879 91661940 -57121532 + MIR SINE MIR 185 245 -17 598 244 122 5 chr11 91661995 91662208 -57121264 + MIR SINE MIR 11 248 -14 336 264 27 0 chr11 91663299 91663409 -57120063 - MIR3 SINE MIR -49 159 47 254 158 30 79 chr11 91663704 91663805 -57119667 + C-rich Low_complexity Low_complexity 5 100 0 199 289 63 34 chr11 91664035 91664154 -57119318 + MIR SINE MIR 93 226 -36 1942 135 3 23 chr11 91664280 91664584 -57118888 + AluSx SINE Alu 1 298 -14 479 272 68 12 chr11 91665729 91665891 -57117581 + MIR SINE MIR 87 257 -5 259 238 152 48 chr11 91666026 91666131 -57117341 + MIR SINE MIR 6 121 -141 348 127 0 0 chr11 91666151 91666206 -57117266 + (TTCC)n Simple_repeat Simple_repeat 1 55 0 1455 171 95 0 chr11 91666206 91666469 -57117003 - AluJb SINE Alu -24 288 1 237 302 158 0 chr11 91666470 91666609 -57116863 + MIR SINE MIR 97 257 -5 424 249 34 51 chr11 91668015 91668192 -57115280 - MIR SINE MIR -40 222 49 2215 124 0 9 chr11 91668343 91668658 -57114814 + AluSx SINE Alu 1 312 0 1247 173 8 14 chr11 91668829 91669089 -57114383 + L1MB3 LINE L1 5894 6141 -42 1953 149 0 19 chr11 91669089 91669397 -57114075 + AluJo SINE Alu 1 302 -10 232 300 186 7 chr11 91669645 91669785 -57113687 - MIR SINE MIR -18 244 80 1078 163 217 0 chr11 91669785 91670043 -57113429 + MER33 DNA MER1_type 1 314 -10 2165 138 3 0 chr11 91670359 91670664 -57112808 - AluSx SINE Alu -6 306 1 483 63 0 0 chr11 91671118 91671181 -57112291 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 966 175 0 7 chr11 91671185 91671339 -57112133 - AluJb SINE Alu -37 275 123 412 326 17 33 chr11 91671352 91671533 -57111939 + MIR3 SINE MIR 30 207 -1 398 220 239 48 chr11 91671762 91672030 -57111442 - MLT1H LTR MaLR 0 549 231 795 161 12 31 chr11 91672539 91672700 -57110772 + Charlie4 DNA MER1_type 74 231 -1730 734 174 13 13 chr11 91672726 91672881 -57110591 + Charlie4 DNA MER1_type 1807 1961 0 732 189 63 13 chr11 91672941 91673100 -57110372 + MER5A DNA MER1_type 22 188 -1 441 234 112 0 chr11 91673225 91673332 -57110140 + L1ME3 LINE L1 6038 6156 -6 446 253 13 45 chr11 91673399 91673553 -57109919 - L2 LINE L2 -1 3312 3164 572 212 71 24 chr11 91673605 91673775 -57109697 + MER104 DNA MER2_type 1 178 -2 398 247 31 0 chr11 91674531 91674628 -57108844 - MIR SINE MIR -68 194 95 448 258 40 0 chr11 91675600 91675724 -57107748 + L2 LINE L2 3185 3313 0 2498 0 0 0 chr11 91677614 91677875 -57105597 + AluYa5 SINE Alu 39 299 -12 370 298 62 25 chr11 91678195 91678356 -57105116 + MIR SINE MIR 21 187 -75 339 225 88 0 chr11 91678557 91678637 -57104835 + MER5A DNA MER1_type 9 95 -94 208 333 61 12 chr11 91679837 91680002 -57103470 + L2 LINE L2 2815 2987 -285 198 219 146 49 chr11 91680067 91680149 -57103323 + L2 LINE L2 3183 3272 0 406 295 16 53 chr11 91681132 91681322 -57102150 - MIR SINE MIR -57 205 23 4809 116 57 4 chr11 91681554 91682298 -57101174 - L1PA16 LINE L1 -9 6157 5375 718 242 44 6 chr11 91682570 91682752 -57100720 - MER5A DNA MER1_type 0 189 1 885 306 44 28 chr11 91683029 91683418 -57100054 + LTR16C LTR ERVL 97 491 0 732 187 8 0 chr11 91684077 91684211 -57099261 + L1MA10 LINE L1 6171 6305 -29 350 234 0 0 chr11 91684320 91684397 -57099075 - L1MA10 LINE L1 -32 6302 6226 424 306 67 10 chr11 91684634 91684827 -57098645 - MIR SINE MIR 0 262 59 212 351 39 0 chr11 91684876 91684953 -57098519 - L2 LINE L2 -18 3295 3216 4898 22 0 1 chr11 91785002 91785817 -56997655 - L1PA4 LINE L1 -326 5829 5016 5176 178 22 1 chr11 91786534 91787207 -56996265 - L1P LINE L1 -2240 3906 3204 189 0 0 0 chr11 91787207 91787228 -56996244 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 5176 178 22 1 chr11 91787228 91787548 -56995924 - L1P LINE L1 -2942 3204 2892 27 49 0 0 chr11 91788262 91788303 -56995169 + AT_rich Low_complexity Low_complexity 1 41 0 2256 116 0 0 chr11 91788306 91788600 -56994872 + AluSg SINE Alu 1 294 -16 1900 77 0 0 chr11 91788827 91789075 -56994397 + L1PA8 LINE L1 5922 6169 -3 4016 124 22 1 chr11 91789079 91789867 -56993605 - L1PB1 LINE L1 -280 5871 5068 211 284 119 0 chr11 91790459 91790526 -56992946 - MIR3 SINE MIR -5 203 129 25 0 0 28 chr11 91791007 91791029 -56992443 + AT_rich Low_complexity Low_complexity 1 23 -12 1569 154 3 66 chr11 91791029 91791347 -56992125 + AluJo SINE Alu 1 298 -14 25 0 0 28 chr11 91791347 91791360 -56992112 + AT_rich Low_complexity Low_complexity 23 35 0 912 165 2 6 chr11 91791508 91792522 -56990950 + (GAATG)n Satellite Satellite 4 1185 0 842 115 0 6 chr11 91792537 91792694 -56990778 + (GAATG)n Satellite Satellite 5 160 0 334 195 8 8 chr11 91792737 91792865 -56990607 + (GAATG)n Satellite Satellite 1 128 0 792 158 0 0 chr11 91793035 91793355 -56990117 + (GAATG)n Satellite Satellite 1 320 0 447 217 0 0 chr11 91793380 91793537 -56989935 + (GAATG)n Satellite Satellite 4 160 0 1023 141 0 2 chr11 91793602 91794048 -56989424 + (GAATG)n Satellite Satellite 1 625 0 208 189 0 0 chr11 91794162 91794199 -56989273 - L3 LINE CR1 -309 1268 1232 2515 68 0 0 chr11 91796067 91796374 -56987098 + AluY SINE Alu 1 307 -4 756 161 0 27 chr11 91797035 91797410 -56986062 + (GAATG)n Satellite Satellite 1 365 0 798 176 2 0 chr11 91797481 91798133 -56985339 + (GAATG)n Satellite Satellite 1 653 0 599 194 0 14 chr11 91798183 91798622 -56984850 + (GAATG)n Satellite Satellite 1 432 0 674 170 0 11 chr11 91798655 91798837 -56984635 + (GAATG)n Satellite Satellite 1 180 0 999 131 3 0 chr11 91798892 91799216 -56984256 + (GAATG)n Satellite Satellite 1 325 0 879 142 0 0 chr11 91799302 91799531 -56983941 + (GAATG)n Satellite Satellite 1 229 0 622 180 4 4 chr11 91799557 91799808 -56983664 + (GAATG)n Satellite Satellite 1 251 0 480 205 0 0 chr11 91799867 91800033 -56983439 + (GAATG)n Satellite Satellite 4 169 0 417 190 0 0 chr11 91800068 91800168 -56983304 + (GAATG)n Satellite Satellite 4 103 0 963 175 0 1 chr11 91800207 91801448 -56982024 + (GAATG)n Satellite Satellite 1 1418 0 692 147 0 13 chr11 91801464 91801620 -56981852 + (GAATG)n Satellite Satellite 5 158 0 987 142 3 0 chr11 91801639 91801963 -56981509 + (GAATG)n Satellite Satellite 1 324 0 2083 123 6 11 chr11 91802141 91802491 -56980981 + L1PA13 LINE L1 5815 6162 -1 584 232 126 0 chr11 91803387 91803585 -56979887 - L1MC4a LINE L1 -1877 5931 5709 252 114 0 0 chr11 91803803 91803838 -56979634 + U2 snRNA snRNA 1 35 -153 274 268 57 0 chr11 91803953 91804076 -56979396 + L1ME4a LINE L1 5991 6120 -1 1753 185 3 25 chr11 91804104 91804418 -56979054 + AluJb SINE Alu 1 307 -5 1337 96 0 11 chr11 91806211 91806388 -56977084 + AluSp SINE Alu 139 313 0 326 277 189 25 chr11 91806473 91806632 -56976840 + MIR SINE MIR 4 188 -74 283 304 0 0 chr11 91807202 91807271 -56976201 + L2 LINE L2 3245 3313 0 332 280 177 48 chr11 91808004 91808190 -56975282 - MIR SINE MIR -6 256 47 1555 192 17 27 chr11 91808193 91808485 -56974987 + AluJo SINE Alu 1 289 -23 386 359 72 0 chr11 91809123 91809290 -56974182 + MIR3 SINE MIR 19 197 -11 2169 71 0 0 chr11 91809764 91810032 -56973440 + AluY SINE Alu 34 301 -10 252 333 34 8 chr11 91810282 91810399 -56973073 + L2 LINE L2 2882 3001 -271 248 255 94 81 chr11 91810951 91811100 -56972372 + L2 LINE L2 3141 3291 -22 2683 231 45 40 chr11 91811298 91812048 -56971424 - MER21B LTR ERV1 -109 754 1 320 350 91 75 chr11 91812655 91812975 -56970497 - L2 LINE L2 0 3272 2948 4674 132 88 14 chr11 91813411 91813564 -56969908 + L1P4 LINE L1 4242 4382 -1786 252 0 0 0 chr11 91813564 91813592 -56969880 + (CA)n Simple_repeat Simple_repeat 1 28 0 4674 132 88 14 chr11 91813592 91814554 -56968918 + L1P4 LINE L1 4382 5472 -696 2122 138 3 0 chr11 91814554 91814844 -56968628 - AluSx SINE Alu -21 291 1 4674 132 88 14 chr11 91814844 91815007 -56968465 + L1P4 LINE L1 5472 5622 -546 1087 153 4 1 chr11 91815112 91818528 -56964944 + ALR/Alpha Satellite centromeric 1 3427 -68 513 349 103 19 chr11 91818640 91819018 -56964454 - L2 LINE L2 -638 2676 2267 2059 155 0 13 chr11 91820141 91820457 -56963015 + AluJb SINE Alu 1 312 0 1977 160 20 0 chr11 91820837 91821143 -56962329 + AluSx SINE Alu 1 312 0 358 254 149 41 chr11 91821608 91822025 -56961447 + L1ME4a LINE L1 5646 6107 -14 568 280 35 23 chr11 91822470 91822727 -56960745 + MIR SINE MIR 2 261 -1 637 168 0 61 chr11 91822875 91823006 -56960466 - FLAM_A SINE Alu -10 123 1 526 230 55 18 chr11 91823354 91823530 -56959942 + MER20B DNA MER1_type 30 214 -5 1295 184 155 40 chr11 91823698 91824046 -56959426 + MLT2D LTR ERVL 27 414 0 2347 97 0 6 chr11 91825028 91825339 -56958133 + AluSg SINE Alu 1 309 -1 1051 90 0 0 chr11 91825462 91825596 -56957876 + AluSg/x SINE Alu 174 307 -5 535 172 46 7 chr11 91825962 91826113 -56957359 + GA-rich Low_complexity Low_complexity 4 160 0 387 190 35 17 chr11 91826233 91826349 -56957123 + GA-rich Low_complexity Low_complexity 3 120 0 490 262 187 28 chr11 91826380 91826594 -56956878 + MIR SINE MIR 5 252 -10 849 148 31 0 chr11 91826949 91827160 -56956312 + FLAM_C SINE Alu 1 215 0 381 363 121 8 chr11 91827325 91827573 -56955899 + L2 LINE L2 2378 2653 -661 318 235 82 0 chr11 91827717 91827802 -56955670 + FLAM_A SINE Alu 35 126 -7 2113 79 40 0 chr11 91827818 91828096 -56955376 + AluY SINE Alu 1 289 -22 1480 136 0 0 chr11 91828200 91828406 -56955066 - AluSq SINE Alu -107 206 1 1067 161 136 42 chr11 91828495 91828731 -56954741 - AluJo SINE Alu -14 298 41 599 235 23 0 chr11 91828788 91828920 -56954552 - Tigger3(Golem) DNA MER2_type -2894 135 1 674 300 42 13 chr11 91829277 91829514 -56953958 + MIR SINE MIR 12 255 -7 186 118 0 0 chr11 91829615 91829649 -56953823 + (TTTTTG)n Simple_repeat Simple_repeat 4 37 0 1591 146 79 18 chr11 91829656 91829936 -56953536 - AluJo SINE Alu -14 298 2 438 226 81 24 chr11 91830044 91830168 -56953304 + L2 LINE L2 3137 3267 -5 703 247 27 11 chr11 91830221 91830407 -56953065 + MER5A DNA MER1_type 1 189 0 2082 136 7 0 chr11 91830463 91830764 -56952708 - AluSq SINE Alu -10 303 1 1352 153 10 50 chr11 91830854 91831154 -56952318 + L1ME2 LINE L1 5855 6142 -22 305 284 35 97 chr11 91831253 91831530 -56951942 + L2 LINE L2 2792 3050 -222 622 326 23 6 chr11 91831571 91831743 -56951729 + MER91A DNA MER1_type 5 179 -17 274 301 151 0 chr11 91831739 91831832 -56951640 + MER91A DNA MER1_type 90 196 0 * 517 280 69 17 chr11 91831846 91832021 -56951451 + L2 LINE L2 3122 3305 -8 2298 109 0 3 chr11 91832031 91832335 -56951137 - AluSq SINE Alu -10 303 1 201 285 0 123 chr11 91832361 91832491 -56950981 + L2 LINE L2 3194 3307 -6 313 340 9 57 chr11 91832538 91832750 -56950722 + L3b LINE CR1 1246 1447 -136 728 200 65 43 chr11 91832855 91833085 -56950387 - L1MD3 LINE L1 -1 7994 7760 369 202 172 44 chr11 91833234 91833350 -56950122 + MIR SINE MIR 57 187 -21 599 256 0 8 chr11 91833403 91833532 -56949940 - FLAM_A SINE Alu -5 128 1 1281 174 78 11 chr11 91833650 91834013 -56949459 + MER31B LTR ERV1 38 464 -2 194 209 47 0 chr11 91834471 91834514 -56948958 + MIR SINE MIR 206 250 -12 191 172 17 121 chr11 91834845 91834903 -56948569 - MIR3 SINE MIR -54 154 103 23 33 0 0 chr11 91836051 91836081 -56947391 + GC_rich Low_complexity Low_complexity 1 30 0 210 219 0 0 chr11 91836139 91836180 -56947292 + (CGG)n Simple_repeat Simple_repeat 3 43 0 698 249 93 18 chr11 91837597 91837822 -56945650 + MIR SINE MIR 18 259 -3 1009 204 139 36 chr11 91838129 91838517 -56944955 - Charlie4a DNA MER1_type -64 444 17 600 213 120 78 chr11 91839331 91839575 -56943897 - LTR37A LTR ERV1 -53 373 108 1448 160 86 11 chr11 91839575 91839843 -56943629 + AluJb SINE Alu 1 288 -24 600 213 120 78 chr11 91839843 91839955 -56943517 - LTR37A LTR ERV1 -318 108 2 29 28 0 0 chr11 91841749 91841785 -56941687 + AT_rich Low_complexity Low_complexity 1 36 0 207 0 0 0 chr11 91843584 91843607 -56939865 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1402 208 48 0 chr11 91843618 91843887 -56939585 - AluJb SINE Alu -30 282 1 490 79 0 0 chr11 91844605 91844668 -56938804 + Alu SINE Alu 1 63 -255 2266 100 0 16 chr11 91845006 91845315 -56938157 - AluSc SINE Alu -3 306 3 2310 100 0 3 chr11 91845320 91845619 -56937853 - AluSc SINE Alu -11 298 1 231 167 21 0 chr11 91845619 91845667 -56937805 - Alu SINE Alu -166 136 88 462 244 130 8 chr11 91846806 91846937 -56936535 + MER58A DNA MER1_type 1 147 0 312 245 42 146 chr11 91847705 91847816 -56935656 + MER5B DNA MER1_type 6 90 -88 1195 182 144 15 chr11 91847816 91847964 -56935508 - AluJo SINE Alu -2 300 172 303 28 0 0 chr11 91847964 91848000 -56935472 + (TG)n Simple_repeat Simple_repeat 1 36 0 1195 182 144 15 chr11 91848000 91848115 -56935357 - AluJo SINE Alu -130 172 3 312 245 42 146 chr11 91848115 91848195 -56935277 + MER5B DNA MER1_type 90 177 -1 1953 158 92 10 chr11 91848402 91848813 -56934659 + MER65A LTR ERV1 1 445 0 529 123 0 0 chr11 91848827 91848908 -56934564 - L1PA12 LINE L1 -115 6053 5973 2259 121 0 6 chr11 91849318 91849633 -56933839 - AluSp SINE Alu 0 313 1 225 0 0 0 chr11 91849635 91849660 -56933812 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2096 102 0 3 chr11 91849660 91849945 -56933527 - AluSx SINE Alu -28 284 1 1619 178 33 13 chr11 91850025 91850121 -56933351 + L1M4 LINE L1 5157 5250 -928 1349 165 124 26 chr11 91850121 91850394 -56933078 - AluJo SINE Alu -1 301 2 1619 178 33 13 chr11 91850394 91850735 -56932737 + L1M4 LINE L1 5250 5601 -577 1690 181 3 26 chr11 91850995 91851298 -56932174 - AluJo SINE Alu -8 304 9 558 221 25 3 chr11 91851705 91851849 -56931623 - MSTD LTR MaLR -265 131 1 2632 267 83 27 chr11 91851878 91852834 -56930638 - MSTD-int LTR MaLR -134 1513 510 848 160 0 0 chr11 91852834 91852959 -56930513 - FLAM_C SINE Alu -8 125 1 2632 267 83 27 chr11 91852959 91853227 -56930245 - MSTD-int LTR MaLR -1137 510 259 403 198 0 38 chr11 91853227 91853333 -56930139 - AluSg/x SINE Alu -3 306 205 277 226 0 0 chr11 91853333 91853386 -56930086 + MSTD LTR MaLR 236 288 -108 1385 141 5 0 chr11 91853388 91853587 -56929885 - AluJb SINE Alu -112 200 1 1790 171 31 0 chr11 91853591 91853883 -56929589 - AluJo SINE Alu -11 301 1 1309 192 24 50 chr11 91853883 91854221 -56929251 - MSTD-int LTR MaLR -1402 333 5 350 83 0 0 chr11 91854226 91854274 -56929198 - MSTD LTR MaLR 0 396 349 858 197 0 0 chr11 91854321 91854458 -56929014 - AluJo SINE Alu -175 137 1 730 207 79 24 chr11 91854458 91854769 -56928703 - MSTD LTR MaLR -43 352 1 28 0 0 0 chr11 91855215 91855243 -56928229 + AT_rich Low_complexity Low_complexity 1 28 0 292 310 23 0 chr11 91856198 91856285 -56927187 + MIR3 SINE MIR 77 165 -43 237 301 81 24 chr11 91858063 91858186 -56925286 - MIR3 SINE MIR -10 198 69 2049 81 42 49 chr11 91858369 91858676 -56924796 - AluSq SINE Alu -4 309 5 348 24 0 0 chr11 91859372 91859413 -56924059 + (TG)n Simple_repeat Simple_repeat 1 41 0 382 192 77 0 chr11 91859678 91859756 -56923716 - MER58A DNA MER1_type -23 84 1 1327 176 142 12 chr11 91859776 91860100 -56923372 - MER47A DNA MER2_type 0 366 1 222 62 0 0 chr11 91860101 91860133 -56923339 + (TG)n Simple_repeat Simple_repeat 2 33 0 308 252 76 0 chr11 91860161 91860280 -56923192 - MER69 DNA AcHobo -426 2100 1973 435 248 47 0 chr11 91860326 91860475 -56922997 - L1MD3 LINE L1 -8 7987 7832 4781 194 82 40 chr11 91860509 91862383 -56921089 - L1MD1 LINE L1 -293 6343 4549 180 0 0 0 chr11 91862383 91862403 -56921069 + (TTTTG)n Simple_repeat Simple_repeat 5 24 0 4781 194 82 40 chr11 91862403 91862833 -56920639 - L1MD1 LINE L1 -2087 4549 4139 1999 113 38 3 chr11 91862833 91863124 -56920348 - AluSx SINE Alu -11 301 1 4781 194 82 40 chr11 91863124 91863332 -56920140 - L1MD1 LINE L1 -2497 4139 3700 868 151 107 44 chr11 91863337 91863543 -56919929 - AluJo SINE Alu -13 299 81 381 206 91 20 chr11 91863587 91863721 -56919751 - L1MD1 LINE L1 -2887 3653 3499 2419 80 0 3 chr11 91863721 91864033 -56919439 - AluY SINE Alu 0 311 1 381 206 91 20 chr11 91864033 91864097 -56919375 - L1MD1 LINE L1 -3041 3499 3441 3433 211 131 51 chr11 91864098 91864703 -56918769 - L1MD1 LINE L1 -3393 3147 2592 1527 209 7 3 chr11 91864703 91864986 -56918486 - AluJo SINE Alu -16 296 13 3433 211 131 51 chr11 91864986 91866702 -56916770 - L1MD1 LINE L1 -3948 2592 233 204 40 0 0 chr11 91866702 91866727 -56916745 + (TTG)n Simple_repeat Simple_repeat 3 27 0 3433 211 131 51 chr11 91866727 91866961 -56916511 - L1MD1 LINE L1 -6307 233 19 494 283 72 20 chr11 91867058 91867210 -56916262 - MER5B DNA MER1_type -2 176 17 180 254 56 70 chr11 91867307 91867378 -56916094 - MER5A DNA MER1_type -28 161 92 222 141 62 94 chr11 91867645 91867709 -56915763 + MER91B DNA MER1_type 1 62 -128 555 184 26 18 chr11 91867716 91867830 -56915642 - MER20 DNA MER1_type -1 218 104 22 35 0 0 chr11 91869897 91869926 -56913546 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 91870389 91870410 -56913062 + AT_rich Low_complexity Low_complexity 1 21 0 734 274 121 0 chr11 91870527 91870742 -56912730 + MIR SINE MIR 5 245 -17 1025 176 20 0 chr11 91871562 91871761 -56911711 - Looper DNA T2_type -598 960 758 1360 132 9 27 chr11 91871762 91871982 -56911490 - AluSg/x SINE Alu -12 298 83 419 276 31 16 chr11 91872128 91872255 -56911217 - MER21B LTR ERV1 -721 142 14 436 153 122 0 chr11 91872315 91872413 -56911059 - L1MA7 LINE L1 -7 6284 6175 * 2496 163 61 21 chr11 91872402 91872972 -56910500 - L1 LINE L1 -2056 4090 3498 1115 158 168 18 chr11 91872974 91873333 -56910139 - L1 LINE L1 -2822 3324 2928 829 184 0 31 chr11 91873333 91873496 -56909976 - FAM SINE Alu -17 158 1 1115 158 168 18 chr11 91873496 91873542 -56909930 - L1 LINE L1 -3218 2928 2890 436 206 172 13 chr11 91873661 91873894 -56909578 - L1MC5 LINE L1 -50 7911 7642 288 296 35 0 chr11 91874109 91874224 -56909248 - L1ME LINE L1 -331 5790 5672 884 130 104 0 chr11 91874371 91874525 -56908947 - MER58A DNA MER1_type -15 209 40 1205 170 0 21 chr11 91874527 91874721 -56908751 + AluJo SINE Alu 5 194 -118 235 268 0 18 chr11 91874735 91874791 -56908681 - MER58A DNA MER1_type -168 56 2 29 0 0 0 chr11 91874940 91874969 -56908503 + AT_rich Low_complexity Low_complexity 1 29 0 574 263 89 19 chr11 91875017 91875230 -56908242 + L2 LINE L2 3055 3282 -31 748 220 62 26 chr11 91875305 91875578 -56907894 + L1MEd LINE L1 900 1182 -4937 336 162 222 20 chr11 91876448 91876505 -56906967 - MER45 DNA AcHobo 0 1581 1537 2189 133 3 0 chr11 91876505 91876813 -56906659 + AluSx SINE Alu 1 309 -3 2041 151 0 6 chr11 91876813 91877125 -56906347 + AluJo SINE Alu 1 310 -2 336 162 222 20 chr11 91877125 91877165 -56906307 - MER45 DNA AcHobo -43 1538 1463 4978 143 36 18 chr11 91877268 91878208 -56905264 + L1MA9 LINE L1 5351 6307 -5 451 251 94 35 chr11 91878218 91878421 -56905051 + MER21B LTR ERV1 589 803 -60 288 0 0 0 chr11 91878526 91878558 -56904914 + (TG)n Simple_repeat Simple_repeat 2 33 0 455 324 142 13 chr11 91878938 91879163 -56904309 + MIR SINE MIR 7 260 -2 2150 125 3 3 chr11 91879584 91879895 -56903577 + AluSx SINE Alu 1 311 -1 189 215 204 75 chr11 91879925 91880018 -56903454 - L2 LINE L2 0 3272 3168 337 348 94 0 chr11 91880085 91880223 -56903249 + MER5B DNA MER1_type 26 176 -2 229 283 185 29 chr11 91880486 91880659 -56902813 + L2 LINE L2 3112 3311 -2 939 210 26 10 chr11 91880783 91880978 -56902494 + AluJo SINE Alu 106 303 -9 27 0 0 0 chr11 91881072 91881099 -56902373 + AT_rich Low_complexity Low_complexity 1 27 0 731 150 18 0 chr11 91881133 91881246 -56902226 - AluSg/x SINE Alu -20 292 178 247 339 85 61 chr11 91881342 91881507 -56901965 - MIR SINE MIR -38 170 2 796 256 59 31 chr11 91883166 91883420 -56900052 + MIR SINE MIR 2 262 0 2314 105 0 3 chr11 91884311 91884615 -56898857 + AluSx SINE Alu 1 303 -9 362 219 133 9 chr11 91885149 91885254 -56898218 - MLT1D LTR MaLR -387 118 1 1738 176 0 4 chr11 91885618 91885896 -56897576 + AluJb SINE Alu 1 277 -35 2266 176 18 7 chr11 91886034 91886482 -56896990 - L1MB7 LINE L1 -256 5928 5476 240 225 154 65 chr11 91886466 91886635 -56896837 - L1ME LINE L1 -227 5894 5711 * 2302 136 28 0 chr11 91886872 91887226 -56896246 - THE1B LTR MaLR 0 364 1 2105 133 0 7 chr11 91887251 91887552 -56895920 - AluSx SINE Alu -13 299 1 1861 152 10 10 chr11 91887735 91888031 -56895441 + AluSx SINE Alu 1 296 -16 818 307 96 32 chr11 91888170 91888607 -56894865 + L2 LINE L2 2032 2496 -818 317 339 124 11 chr11 91889266 91889443 -56894029 - MIR SINE MIR 0 262 66 677 125 17 42 chr11 91889565 91889685 -56893787 - MER45A DNA AcHobo -4 174 58 270 114 0 45 chr11 91889716 91889760 -56893712 - MLT1D LTR MaLR -459 46 5 205 368 90 36 chr11 91889808 91890031 -56893441 + L2 LINE L2 2742 2976 -338 375 271 199 13 chr11 91890130 91890281 -56893191 + MIR SINE MIR 65 243 -19 267 370 134 8 chr11 91890405 91890532 -56892940 + L2 LINE L2 3121 3263 -9 265 268 56 70 chr11 91891224 91891366 -56892106 + MIR SINE MIR 49 188 -74 338 254 123 16 chr11 91891418 91891540 -56891932 - MIR SINE MIR -99 163 29 317 191 147 0 chr11 91891649 91891717 -56891755 - MIR SINE MIR -64 144 67 262 332 67 86 chr11 91891944 91892225 -56891247 + L2 LINE L2 2780 3064 -249 194 0 39 0 chr11 91894030 91894056 -56889416 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 269 218 27 36 chr11 91894357 91894447 -56889025 + MLT1J LTR MaLR 237 407 -194 417 268 65 74 chr11 91894836 91895348 -56888124 + L1ME4a LINE L1 5521 6027 -94 5557 142 9 37 chr11 91895450 91896468 -56887004 + L1MC1 LINE L1 5345 6333 0 1858 157 0 50 chr11 91896502 91896820 -56886652 - AluJo SINE Alu -9 303 2 231 371 57 53 chr11 91897051 91897296 -56886176 - L2 LINE L2 -222 3050 2805 262 130 0 0 chr11 91897504 91897551 -56885921 - FRAM/FAM SINE Alu -84 82 46 776 167 108 54 chr11 91898005 91898059 -56885413 + MER112 DNA MER1_type 1 51 -205 2609 52 0 0 chr11 91898059 91898367 -56885105 + AluY SINE Alu 1 308 -3 776 167 108 54 chr11 91898367 91898552 -56884920 + MER112 DNA MER1_type 51 253 -3 1918 116 78 0 chr11 91899067 91899351 -56884121 - AluSp SINE Alu -7 306 1 1645 159 83 0 chr11 91899461 91899737 -56883735 + AluJo SINE Alu 2 300 -12 2283 111 0 0 chr11 91900765 91901062 -56882410 - AluSx SINE Alu -15 297 1 192 324 44 0 chr11 91901076 91901144 -56882328 + L2 LINE L2 3242 3312 -1 901 195 23 0 chr11 91901356 91901530 -56881942 - MER5A DNA MER1_type 0 189 12 2299 113 7 0 chr11 91901564 91901873 -56881599 - AluSx SINE Alu -1 311 1 567 271 91 8 chr11 91901910 91902117 -56881355 - MIR SINE MIR -16 246 27 368 200 0 27 chr11 91902314 91902389 -56881083 + MER5A DNA MER1_type 1 73 -116 489 139 175 36 chr11 91902400 91902537 -56880935 + MER53 DNA DNA 31 186 -3 701 200 23 0 chr11 91902540 91902670 -56880802 + MER5A DNA MER1_type 57 189 0 277 305 94 0 chr11 91902856 91902984 -56880488 - MLT1L LTR MaLR 0 615 476 * 318 206 175 0 chr11 91902977 91903074 -56880398 + MER58B DNA MER1_type 228 341 0 240 59 0 0 chr11 91903274 91903308 -56880164 + (A)n Simple_repeat Simple_repeat 1 34 0 546 281 0 0 chr11 91903575 91903696 -56879776 - L2 LINE L2 -6 3307 3187 672 241 64 18 chr11 91903699 91903919 -56879553 - MLT1L LTR MaLR 0 615 386 1315 128 67 104 chr11 91903927 91904225 -56879247 - AluJb SINE Alu -15 297 11 239 296 0 0 chr11 91904233 91904287 -56879185 - MLT1L LTR MaLR -211 404 351 490 122 12 24 chr11 91904339 91904421 -56879051 - AluJ/FRAM SINE Alu -13 299 219 641 221 0 0 chr11 91904463 91904576 -56878896 - FRAM SINE Alu -64 112 1 1347 126 0 0 chr11 91904583 91904765 -56878707 - AluJb SINE Alu -2 310 129 321 247 0 24 chr11 91904930 91905015 -56878457 - MLT1L LTR MaLR -532 83 1 2260 88 7 10 chr11 91905051 91905346 -56878126 + AluSq SINE Alu 1 294 -19 1524 244 121 4 chr11 91905379 91905859 -56877613 - MLT1H LTR MaLR -6 543 8 255 257 0 0 chr11 91906842 91906943 -56876529 + GA-rich Low_complexity Low_complexity 1 101 0 1522 162 129 0 chr11 91907143 91907635 -56875837 - L1MB8 LINE L1 -235 5929 5336 1403 213 60 38 chr11 91907690 91908090 -56875382 + MLT1C LTR MaLR 57 465 -2 672 205 0 8 chr11 91908126 91908243 -56875229 - FLAM_A SINE Alu -18 124 9 2522 68 3 0 chr11 91908270 91908577 -56874895 - AluSg SINE Alu -1 309 2 4348 179 74 89 chr11 91908579 91909094 -56874378 - L1MB8 LINE L1 -842 5304 4783 567 119 0 0 chr11 91909094 91909178 -56874294 - AluS SINE Alu -228 84 1 4348 179 74 89 chr11 91909178 91909471 -56874001 - L1MB8 LINE L1 -1363 4783 4487 2180 144 60 38 chr11 91909471 91909888 -56873584 - MSTB LTR MaLR 0 426 1 4348 179 74 89 chr11 91909888 91910129 -56873343 - L1MB8 LINE L1 -1659 4487 4244 2139 114 7 19 chr11 91910129 91910437 -56873035 + AluSx SINE Alu 1 304 -8 4348 179 74 89 chr11 91910437 91910700 -56872772 - L1MB8 LINE L1 -1902 4244 3928 503 276 123 46 chr11 91911510 91911771 -56871701 - L3 LINE CR1 -1 1576 1296 793 250 73 10 chr11 91912243 91912447 -56871025 - MIR SINE MIR -7 255 39 639 299 30 6 chr11 91912938 91913102 -56870370 - MIR SINE MIR -35 227 60 246 197 53 26 chr11 91913267 91913343 -56870129 + MIR SINE MIR 133 210 -52 192 296 0 0 chr11 91914051 91914095 -56869377 - MIR SINE MIR -12 250 207 1242 224 84 50 chr11 91915642 91915875 -56867597 + MER82 DNA MER2_type 261 513 -140 2202 122 3 0 chr11 91915875 91916178 -56867294 - AluSx SINE Alu -8 304 1 1242 224 84 50 chr11 91916178 91916323 -56867149 + MER82 DNA MER2_type 513 652 -1 1838 171 0 0 chr11 91916363 91916662 -56866810 - AluJb SINE Alu -13 299 1 1952 120 41 0 chr11 91916748 91917040 -56866432 - AluSp SINE Alu -9 304 1 2043 131 6 13 chr11 91917093 91917407 -56866065 - AluSq SINE Alu -1 312 1 2242 78 3 7 chr11 91918080 91918376 -56865096 + AluY SINE Alu 1 295 -16 348 117 60 46 chr11 91918376 91918891 -56864581 + (TA)n Simple_repeat Simple_repeat 1 522 0 544 169 85 163 chr11 91919461 91919756 -56863716 - L1M4 LINE L1 -1780 4366 4095 503 252 58 52 chr11 91919823 91920133 -56863339 - L1MEc LINE L1 -3720 2495 2184 241 248 71 28 chr11 91920147 91920288 -56863184 - L1MEc LINE L1 -4224 2172 2026 297 299 103 0 chr11 91921260 91921315 -56862157 - MIR3 SINE MIR -3 205 157 2012 149 3 0 chr11 91921315 91921610 -56861862 + AluSx SINE Alu 1 296 -16 297 299 103 0 chr11 91921610 91921651 -56861821 - MIR3 SINE MIR -51 157 99 2066 72 69 14 chr11 91922080 91922371 -56861101 - AluY SINE Alu -4 307 1 3789 165 68 142 chr11 91922431 91923361 -56860111 + Looper DNA T2_type 22 1020 -538 2166 121 3 13 chr11 91923361 91923676 -56859796 + AluSx SINE Alu 1 312 0 3789 165 68 142 chr11 91923676 91924344 -56859128 + Looper DNA T2_type 1020 1494 -64 333 0 0 0 chr11 91924344 91924381 -56859091 + (TG)n Simple_repeat Simple_repeat 2 38 0 3789 165 68 142 chr11 91924381 91924440 -56859032 + Looper DNA T2_type 1494 1556 -2 297 182 0 15 chr11 91924754 91924820 -56858652 + L1M4 LINE L1 15 79 -6463 1341 179 39 4 chr11 91924820 91925049 -56858423 - AluJo SINE Alu -75 237 1 4888 214 118 27 chr11 91925049 91926414 -56857058 + L1M4 LINE L1 85 1630 -5016 1936 142 44 46 chr11 91926414 91926780 -56856692 + MLT1A1 LTR MaLR 1 365 0 4888 214 118 27 chr11 91926780 91927191 -56856281 + L1M4 LINE L1 1630 2002 -4644 1847 129 76 55 chr11 91927680 91927757 -56855715 - L1MA9 LINE L1 -8 6304 6230 195 42 0 0 chr11 91927757 91927781 -56855691 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2146 98 0 17 chr11 91927784 91928071 -56855401 - AluSx SINE Alu -30 282 1 1847 129 76 55 chr11 91928071 91928422 -56855050 - L1MA9 LINE L1 -83 6229 5863 1100 235 195 13 chr11 91928426 91928805 -56854667 - L2 LINE L2 -1674 1640 1193 22 99 0 0 chr11 91929008 91929079 -56854393 + AT_rich Low_complexity Low_complexity 1 71 0 278 262 7 117 chr11 91929104 91929148 -56854324 - L2 LINE L2 -9 3304 3257 2366 65 0 10 chr11 91929148 91929456 -56854016 - AluY SINE Alu -6 305 1 278 262 7 117 chr11 91929456 91929556 -56853916 - L2 LINE L2 -56 3257 3176 6931 39 4 7 chr11 91929858 91930757 -56852715 - L1PA6 LINE L1 -4 6150 5254 2316 91 3 0 chr11 91930765 91931051 -56852421 - AluSg SINE Alu -23 287 1 752 271 88 39 chr11 91931100 91931557 -56851915 - HAL1 LINE L1 -94 2413 1935 1230 155 73 0 chr11 91931597 91931803 -56851669 - AluJo SINE Alu -6 306 86 261 371 17 0 chr11 91931815 91931931 -56851541 - HAL1 LINE L1 -629 1878 1761 226 241 141 0 chr11 91931952 91932122 -56851350 - L1ME2 LINE L1 -217 5947 5754 290 241 82 31 chr11 91932142 91932337 -56851135 - L1ME2 LINE L1 -2322 5486 5282 352 309 50 30 chr11 91932356 91932557 -56850915 - L1ME2 LINE L1 -863 5283 5079 396 0 0 0 chr11 91932587 91932631 -56850841 + (TG)n Simple_repeat Simple_repeat 2 45 0 402 48 0 48 chr11 91932631 91932693 -56850779 - FLAM SINE Alu -28 115 57 479 291 84 21 chr11 91932704 91932941 -56850531 - L1ME2 LINE L1 -1120 5026 4775 323 261 28 21 chr11 91933048 91933190 -56850282 - L1ME2 LINE L1 -1502 4644 4502 1918 175 3 3 chr11 91933463 91933760 -56849712 + AluJb SINE Alu 3 299 -13 793 155 0 8 chr11 91934448 91934577 -56848895 - FLAM_C SINE Alu -5 128 1 283 264 192 54 chr11 91935267 91935434 -56848038 + MIR3 SINE MIR 2 191 -17 24 32 0 0 chr11 91935874 91935905 -56847567 + AT_rich Low_complexity Low_complexity 1 31 0 273 122 41 0 chr11 91936369 91936418 -56847054 - MSTC LTR MaLR -5 423 373 1395 199 11 11 chr11 91936429 91936696 -56846776 - AluJo SINE Alu -16 296 30 1726 139 119 37 chr11 91936698 91937051 -56846421 - MSTC LTR MaLR -46 382 1 25 0 0 0 chr11 91938045 91938070 -56845402 + AT_rich Low_complexity Low_complexity 1 25 0 457 320 44 26 chr11 91938311 91938583 -56844889 - MER110-int LTR ERV1 -1650 2997 2721 2125 133 0 0 chr11 91939162 91939455 -56844017 + AluSx SINE Alu 1 293 -19 1365 158 47 61 chr11 91939479 91939552 -56843920 - L1MB8 LINE L1 -1 6177 6104 671 184 18 9 chr11 91939552 91939666 -56843806 + FLAM_A SINE Alu 1 115 -18 1365 158 47 61 chr11 91939666 91939952 -56843520 - L1MB8 LINE L1 -74 6104 5823 1900 152 3 37 chr11 91939952 91940274 -56843198 - AluJb SINE Alu -1 311 1 1363 193 48 8 chr11 91940281 91940633 -56842839 - L1MB8 LINE L1 -878 5268 4903 312 154 46 0 chr11 91940634 91940699 -56842773 - Looper DNA T2_type -579 979 912 2022 112 54 0 chr11 91941063 91941339 -56842133 - AluSx SINE Alu -21 291 1 2913 14 0 0 chr11 91941368 91941721 -56841751 - L1PA4 LINE L1 -534 5621 5269 4208 32 0 0 chr11 91941721 91942220 -56841252 + L1PA4 LINE L1 5653 6152 -3 856 287 41 4 chr11 91943011 91943255 -56840217 + MIR SINE MIR 2 254 -8 1896 89 32 0 chr11 91943502 91943748 -56839724 - AluSg SINE Alu -14 296 43 581 273 15 15 chr11 91943863 91944068 -56839404 + L1M4 LINE L1 3437 3641 -2505 2421 61 0 3 chr11 91944136 91944430 -56839042 - AluY SINE Alu -18 293 1 1713 177 32 0 chr11 91944487 91944764 -56838708 + AluJb SINE Alu 1 286 -26 928 115 40 0 chr11 91944810 91944984 -56838488 - L1MA3 LINE L1 -108 6197 6017 370 102 34 0 chr11 91944983 91945042 -56838430 + L1MC1 LINE L1 6273 6333 0 635 80 10 10 chr11 91945133 91945233 -56838239 + L1MB3 LINE L1 5748 5847 -336 3730 162 35 6 chr11 91945498 91946189 -56837283 + MER50 LTR ERV1 1 711 -23 2173 129 0 0 chr11 91946272 91946567 -56836905 - AluSx SINE Alu -17 295 1 3820 85 43 0 chr11 91946713 91947244 -56836228 + MER41A LTR ERV1 1 554 0 5084 96 62 53 chr11 91947251 91947773 -56835699 + MER4D LTR ERV1 1 536 -367 2078 128 0 3 chr11 91947773 91948087 -56835385 + AluSg SINE Alu 6 310 0 5084 96 62 53 chr11 91948087 91948451 -56835021 + MER4D LTR ERV1 536 895 -8 3540 108 65 2 chr11 91948517 91949038 -56834434 - MER41C LTR ERV1 0 554 1 2221 112 0 0 chr11 91950506 91950800 -56832672 - AluSx SINE Alu -18 294 1 2219 112 3 10 chr11 91951753 91952066 -56831406 + AluSq SINE Alu 3 313 0 403 310 124 4 chr11 91952133 91952327 -56831145 - MIR SINE MIR -1 261 43 * 833 229 157 30 chr11 91952321 91952626 -56830846 + L2 LINE L2 2968 3311 -2 2405 77 0 10 chr11 91952769 91953079 -56830393 + AluY SINE Alu 2 308 -3 306 0 0 0 chr11 91953084 91953106 -56830366 + (GA)n Simple_repeat Simple_repeat 1 56 0 306 0 0 0 chr11 91953106 91953140 -56830332 + (GA)n Simple_repeat Simple_repeat 2 35 0 1897 220 38 24 chr11 91953168 91953722 -56829750 - L1ME3 LINE L1 -6 6392 5831 * 4598 247 53 25 chr11 91953713 91955279 -56828193 - L1ME3 LINE L1 -778 5604 3977 1654 173 37 4 chr11 91955279 91955576 -56827896 - AluJo SINE Alu 0 306 1 4598 247 53 25 chr11 91955576 91955831 -56827641 - L1ME3 LINE L1 -2405 3977 3731 8946 43 8 1 chr11 91955894 91957066 -56826406 + L1P LINE L1 3411 4590 -1556 344 294 65 0 chr11 91957093 91957263 -56826209 - L1ME3 LINE L1 -4939 1445 1265 3196 226 43 17 chr11 91957522 91958670 -56824802 - L1ME1 LINE L1 -22 6144 4964 2218 166 62 15 chr11 91959800 91960204 -56823268 + MSTB LTR MaLR 2 424 -2 2070 135 54 47 chr11 91960274 91960703 -56822769 + MSTB1 LTR MaLR 1 432 0 1790 254 61 46 chr11 91960817 91961060 -56822412 - MLT2F LTR ERVL 0 663 425 3147 161 20 91 chr11 91961060 91961804 -56821668 + LTR8 LTR ERV1 1 691 0 1790 254 61 46 chr11 91961804 91962213 -56821259 - MLT2F LTR ERVL -238 425 1 286 288 63 36 chr11 91962629 91962740 -56820732 + L2 LINE L2 3151 3264 -8 392 246 85 124 chr11 91963045 91963552 -56819920 - L1ME4a LINE L1 -11 6110 5623 1170 245 63 8 chr11 91963906 91964285 -56819187 + L1ME3A LINE L1 5555 5954 -216 203 264 0 0 chr11 91965566 91965619 -56817853 + MIR SINE MIR 205 257 -5 200 250 330 0 chr11 91966174 91966274 -56817198 - L2 LINE L2 -6 3266 3134 5331 171 50 21 chr11 91966359 91966420 -56817052 - L1MC1 LINE L1 0 6613 6555 1791 155 43 40 chr11 91966420 91966794 -56816678 - THE1C LTR MaLR 0 375 1 5331 171 50 21 chr11 91966794 91968328 -56815144 - L1MC1 LINE L1 -58 6555 4986 * 10937 179 77 13 chr11 91968326 91969208 -56814264 - L1MC1 LINE L1 -3249 3177 2353 2324 92 0 0 chr11 91969208 91969501 -56813971 - AluY SINE Alu -18 293 1 10937 179 77 13 chr11 91969501 91969800 -56813672 - L1MC1 LINE L1 -4073 2353 2075 1700 181 0 30 chr11 91969800 91970104 -56813368 + AluJo SINE Alu 1 295 -17 10937 179 77 13 chr11 91970104 91971892 -56811580 - L1MC1 LINE L1 -4351 2075 20 1848 309 100 35 chr11 91972047 91973061 -56810411 - L2 LINE L2 -354 2960 1881 21 0 0 0 chr11 91974641 91974662 -56808810 + AT_rich Low_complexity Low_complexity 1 21 0 2320 76 10 0 chr11 91975210 91975501 -56807971 + AluSx SINE Alu 1 294 -18 28 48 0 0 chr11 91975903 91975945 -56807527 + AT_rich Low_complexity Low_complexity 1 42 0 222 116 0 0 chr11 91976222 91976265 -56807207 + (TTAA)n Simple_repeat Simple_repeat 3 45 0 607 287 76 28 chr11 91976761 91977078 -56806394 + MER102b DNA MER1_type 1 332 -9 181 186 23 23 chr11 91977461 91977504 -56805968 - MIR3 SINE MIR -6 202 160 330 132 0 0 chr11 91978277 91978330 -56805142 + (TCCC)n Simple_repeat Simple_repeat 2 54 0 524 229 25 17 chr11 91978330 91978448 -56805024 - L2 LINE L2 -1 3312 3194 1201 174 5 23 chr11 91979123 91979341 -56804131 + AluJo SINE Alu 11 224 -88 180 0 0 0 chr11 91979342 91979362 -56804110 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1946 127 173 19 chr11 91979466 91979837 -56803635 - MSTA LTR MaLR 0 428 1 2298 107 0 3 chr11 91979928 91980227 -56803245 + AluSc SINE Alu 1 298 -11 337 336 158 33 chr11 91980433 91981040 -56802432 - L2 LINE L2 -402 2912 2230 2794 102 51 7 chr11 91981856 91982266 -56801206 - MSTA LTR MaLR 0 428 1 2205 128 0 0 chr11 91983168 91983466 -56800006 - AluSx SINE Alu -13 299 2 406 254 137 26 chr11 91983488 91983662 -56799810 - MIR SINE MIR -59 203 16 237 228 0 25 chr11 91984474 91984553 -56798919 - MER103 DNA DNA -46 120 44 280 359 0 0 chr11 91984684 91984787 -56798685 + MARNA DNA Mariner 86 188 -398 25 0 0 0 chr11 91984813 91984838 -56798634 + AT_rich Low_complexity Low_complexity 1 25 0 197 289 66 13 chr11 91984990 91985066 -56798406 - MIR SINE MIR -165 97 18 377 260 71 26 chr11 91985151 91985305 -56798167 + MARNA DNA Mariner 368 528 -58 2128 106 0 7 chr11 91985745 91986027 -56797445 - AluSx SINE Alu -32 280 1 220 229 33 0 chr11 91986302 91986363 -56797109 - MIR SINE MIR -64 198 136 21 0 0 0 chr11 91986372 91986393 -56797079 + AT_rich Low_complexity Low_complexity 1 21 0 307 256 9 73 chr11 91986411 91986533 -56796939 + MIR SINE MIR 8 93 -115 1767 146 62 0 chr11 91987964 91988239 -56795233 - AluSx SINE Alu -20 292 1 560 121 172 0 chr11 91988503 91988619 -56794853 - Charlie1 DNA MER1_type -248 2513 2378 2105 96 0 93 chr11 91988633 91988977 -56794495 - AluSx SINE Alu 0 312 1 300 226 0 0 chr11 91989048 91989110 -56794362 - Charlie8 DNA MER1_type -2203 214 153 324 237 46 61 chr11 91989144 91989275 -56794197 - Charlie8 DNA MER1_type -2250 167 39 1887 161 21 0 chr11 91989429 91989720 -56793752 - AluJb SINE Alu -15 297 1 262 358 40 25 chr11 91989726 91989927 -56793545 + L2 LINE L2 2895 3098 -174 2020 133 3 32 chr11 91989945 91990260 -56793212 + AluSx SINE Alu 1 306 -6 184 170 170 21 chr11 91991476 91991523 -56791949 - L2 LINE L2 -2 3270 3217 361 239 87 29 chr11 91991690 91991828 -56791644 - L2 LINE L2 -1 3312 3167 2190 106 3 3 chr11 91991960 91992263 -56791209 + AluY SINE Alu 1 303 -8 742 278 123 36 chr11 91992280 91992940 -56790532 - L1ME4a LINE L1 0 6121 5385 1813 159 3 50 chr11 91992940 91993260 -56790212 - AluJo SINE Alu -7 305 1 742 278 123 36 chr11 91993260 91993358 -56790114 - L1ME4a LINE L1 -736 5385 5297 370 271 70 16 chr11 91993984 91994113 -56789359 - L2 LINE L2 -804 2510 2375 620 246 160 0 chr11 91994402 91994577 -56788895 + MER58A DNA MER1_type 22 224 0 600 280 18 9 chr11 91994577 91994795 -56788677 + L1MEd LINE L1 621 840 -5279 239 280 85 28 chr11 91995318 91995529 -56787943 - L1MEd LINE L1 -3714 2826 2604 302 304 27 18 chr11 91995539 91995651 -56787821 - L1MEd LINE L1 -3980 2560 2448 1950 131 48 0 chr11 91995878 91996169 -56787303 - AluSq SINE Alu -8 305 1 285 229 214 21 chr11 91996310 91996450 -56787022 - HAL1b LINE L1 -845 897 782 384 319 32 74 chr11 91996485 91996629 -56786843 - L1MEd LINE L1 -4918 1612 1478 2362 99 0 6 chr11 91996629 91996941 -56786531 + AluSg SINE Alu 1 310 0 384 319 32 74 chr11 91996941 91997012 -56786460 - L1MEd LINE L1 -5052 1478 1406 951 268 163 41 chr11 91997028 91997439 -56786033 + L2 LINE L2 2853 3313 0 357 289 21 88 chr11 91997410 91997604 -56785868 - MIR SINE MIR -81 181 1 * 1777 139 3 43 chr11 91998446 91998749 -56784723 - AluJb SINE Alu -21 291 1 291 328 32 48 chr11 91998765 91998951 -56784521 - L1ME LINE L1 -318 5803 5621 32 26 0 0 chr11 91999320 91999359 -56784113 + AT_rich Low_complexity Low_complexity 1 39 0 2170 111 7 0 chr11 91999556 91999853 -56783619 - AluSg SINE Alu -11 299 1 524 237 170 0 chr11 92000083 92000218 -56783254 + MER5A DNA MER1_type 26 183 -6 311 299 194 56 chr11 92000375 92000663 -56782809 - L2 LINE L2 0 3272 2945 1286 329 90 22 chr11 92000734 92001694 -56781778 + L2 LINE L2 2267 3290 -23 2724 148 33 16 chr11 92001842 92002295 -56781177 + LOR1b LTR ERV1 1 461 0 4458 113 50 38 chr11 92002806 92003547 -56779925 - LTR1 LTR ERV1 0 785 36 2255 115 0 0 chr11 92004414 92004710 -56778762 - AluSx SINE Alu -16 296 1 21 0 0 0 chr11 92004985 92005006 -56778466 + AT_rich Low_complexity Low_complexity 1 21 0 232 333 46 0 chr11 92005536 92005644 -56777828 - MIR SINE MIR 0 262 150 1431 172 48 56 chr11 92005678 92005774 -56777698 - L1ME LINE L1 -592 5574 5479 1937 159 3 0 chr11 92005774 92006075 -56777397 - AluJo SINE Alu -10 302 1 1431 172 48 56 chr11 92006075 92006332 -56777140 - L1ME LINE L1 -687 5479 5227 364 299 14 27 chr11 92006594 92006741 -56776731 + MIR SINE MIR 68 212 -50 2106 113 17 0 chr11 92007063 92007354 -56776118 + AluSx SINE Alu 1 296 -16 34 89 0 0 chr11 92007411 92007501 -56775971 + AT_rich Low_complexity Low_complexity 1 90 0 310 285 140 6 chr11 92007649 92007828 -56775644 - L1ME LINE L1 -302 5819 5617 1290 114 0 0 chr11 92007844 92008019 -56775453 - AluSg/x SINE Alu -5 307 133 4247 160 41 22 chr11 92008184 92008988 -56774484 + L1MB2 LINE L1 5353 6171 0 202 301 151 0 chr11 92009035 92009108 -56774364 - MIR SINE MIR -12 250 167 479 264 107 11 chr11 92010195 92010373 -56773099 + MER117 DNA MER1_type 3 197 0 2368 65 0 3 chr11 92011418 92011710 -56771762 - AluY SINE Alu -20 291 1 1853 150 24 3 chr11 92011735 92012028 -56771444 + AluJb SINE Alu 1 299 -13 4811 36 18 2 chr11 92013598 92014147 -56769325 + LTR6B LTR ERV1 1 558 0 2328 80 0 58 chr11 92014708 92015033 -56768439 + AluSc SINE Alu 1 306 -3 25 75 0 0 chr11 92015145 92015198 -56768274 + AT_rich Low_complexity Low_complexity 1 53 0 12750 168 42 32 chr11 92015199 92015406 -56768066 - L1MA7 LINE L1 -26 6277 6074 2174 125 0 3 chr11 92015406 92015702 -56767770 + AluSx SINE Alu 1 295 -17 12750 168 42 32 chr11 92015702 92017573 -56765899 - L1MA7 LINE L1 -229 6074 4226 905 167 0 0 chr11 92017573 92017705 -56765767 - FLAM_C SINE Alu -1 132 1 12750 168 42 32 chr11 92017705 92019151 -56764321 - L1MA7 LINE L1 -2077 4226 2796 274 206 133 7 chr11 92020154 92020254 -56763218 + L1MEc LINE L1 1564 1897 -867 761 144 61 23 chr11 92020717 92020849 -56762623 + L1PA16 LINE L1 6021 6157 -9 568 261 106 6 chr11 92020863 92021043 -56762429 + MIR SINE MIR 57 254 -8 5653 99 96 72 chr11 92022682 92024183 -56759289 - pTR5 LTR ERV1 0 2438 743 477 302 79 35 chr11 92024977 92025371 -56758101 + L1MEc LINE L1 2543 2953 -3262 1080 315 40 21 chr11 92025709 92026134 -56757338 - LTR16A LTR ERVL 0 450 18 6284 208 52 62 chr11 92026262 92027033 -56756439 - L1M4 LINE L1 -654 5520 4743 2394 150 48 26 chr11 92027033 92027452 -56756020 - L1PB4 LINE L1 -12 6144 5717 6284 208 52 62 chr11 92027452 92028755 -56754717 - L1M4 LINE L1 -1431 4743 3457 789 203 53 93 chr11 92028776 92028896 -56754576 - L1M4 LINE L1 -3034 3112 2989 1383 176 63 127 chr11 92028896 92029338 -56754134 - MLT2D LTR ERVL 0 414 1 789 203 53 93 chr11 92029338 92029538 -56753934 - L1M4 LINE L1 -3157 2989 2805 226 305 51 34 chr11 92029645 92029763 -56753709 - L2 LINE L2 -291 2981 2862 365 216 15 8 chr11 92029764 92029898 -56753574 - L1M4 LINE L1 -2865 3281 3147 322 307 68 11 chr11 92031719 92031895 -56751577 + MIR SINE MIR 7 192 -70 343 206 0 39 chr11 92032151 92032253 -56751219 - L1MC5 LINE L1 -33 7928 7831 314 260 0 0 chr11 92032489 92032562 -56750910 - MIR SINE MIR -77 131 59 361 298 144 65 chr11 92034062 92034611 -56748861 - L2 LINE L2 -42 3230 2652 195 373 0 0 chr11 92036670 92036737 -56746735 + L2 LINE L2 3193 3259 -13 545 276 61 6 chr11 92036936 92037099 -56746373 + MIR SINE MIR 2 173 -89 2122 99 10 39 chr11 92037657 92037969 -56745503 + AluSq SINE Alu 1 303 -10 229 235 0 0 chr11 92039403 92039454 -56744018 - L2 LINE L2 -1 3312 3262 202 261 63 113 chr11 92039536 92039774 -56743698 - L2 LINE L2 -220 3052 2827 279 217 12 84 chr11 92040632 92040715 -56742757 + ERVL LTR ERVL 3246 3322 -2332 5366 290 56 9 chr11 92040876 92042857 -56740615 + ERVL LTR ERVL 3363 5506 -191 2144 127 0 9 chr11 92043077 92043392 -56740080 - AluSx SINE Alu 0 312 1 510 243 316 9 chr11 92043468 92043653 -56739819 + LTR50 LTR ERVL 1 128 -667 854 177 61 17 chr11 92043653 92043834 -56739638 - MER53 DNA DNA 0 189 1 510 243 316 9 chr11 92043834 92043977 -56739495 + LTR50 LTR ERVL 128 430 -365 588 311 68 10 chr11 92044309 92044605 -56738867 + L1ME4a LINE L1 5547 5859 -262 253 224 162 75 chr11 92044424 92044652 -56738820 + L1MB8 LINE L1 5680 5927 -251 * 462 289 118 0 chr11 92044686 92044821 -56738651 - MIR SINE MIR -106 156 6 321 269 65 11 chr11 92045278 92045371 -56738101 - L2 LINE L2 -24 3248 3151 281 238 175 0 chr11 92045433 92045513 -56737959 - L2 LINE L2 -3 3310 3217 227 265 44 0 chr11 92046173 92046241 -56737231 + MER5A DNA MER1_type 119 189 0 271 246 115 49 chr11 92046497 92046680 -56736792 - MIR3 SINE MIR -11 197 3 353 244 17 59 chr11 92046889 92047008 -56736464 - MIR SINE MIR -12 250 137 1676 264 108 5 chr11 92047039 92047604 -56735868 + L2 LINE L2 1406 2028 -1286 192 337 126 11 chr11 92048250 92048345 -56735127 - L2 LINE L2 0 3313 3208 221 348 136 11 chr11 92049183 92049367 -56734105 - L2 LINE L2 -231 3041 2835 373 270 80 0 chr11 92049733 92049833 -56733639 - MIR SINE MIR -109 153 46 379 299 30 30 chr11 92051258 92051392 -56732080 + MIR SINE MIR 19 152 -56 827 244 244 6 chr11 92051506 92051858 -56731614 - LTR16A LTR ERVL -8 442 7 1172 151 29 10 chr11 92052232 92052438 -56731034 + Tigger2 DNA MER2_type 1 210 -2508 939 162 13 7 chr11 92052437 92052591 -56730881 + Tigger2 DNA MER2_type 2564 2718 0 * 598 331 30 60 chr11 92052708 92053074 -56730398 - L2 LINE L2 0 3272 2918 545 265 188 36 chr11 92053907 92054130 -56729342 + MIR SINE MIR 6 262 0 209 208 142 132 chr11 92054130 92054236 -56729236 + MIR SINE MIR 47 153 -55 251 365 66 7 chr11 92054767 92054904 -56728568 - MIR SINE MIR -51 211 67 * 297 275 108 0 chr11 92054903 92055023 -56728449 - MIR SINE MIR -40 222 90 520 298 50 11 chr11 92055881 92056062 -56727410 - MER5A DNA MER1_type -1 188 1 356 272 49 54 chr11 92056899 92057083 -56726389 + MIR SINE MIR 6 188 -74 1341 128 4 13 chr11 92057097 92057323 -56726149 - L1MA9 LINE L1 0 6312 6089 339 113 0 0 chr11 92057716 92057778 -56725694 + (TC)n Simple_repeat Simple_repeat 1 62 0 303 351 65 24 chr11 92058008 92058301 -56725171 + L2 LINE L2 695 999 -2315 827 101 28 28 chr11 92058384 92058563 -56724909 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 624 260 78 65 chr11 92058879 92059110 -56724362 - MIR SINE MIR 0 262 29 467 200 215 0 chr11 92060585 92060715 -56722757 - MER103 DNA DNA -1 165 8 349 279 70 92 chr11 92061040 92061226 -56722246 + L2 LINE L2 2831 3013 -259 1931 108 54 0 chr11 92061226 92061505 -56721967 - AluSc SINE Alu -2 307 14 349 279 70 92 chr11 92061505 92061547 -56721925 + L2 LINE L2 3013 3054 -218 651 218 8 8 chr11 92061776 92061909 -56721563 + FLAM_A SINE Alu 10 142 0 286 329 171 0 chr11 92062231 92062385 -56721087 + MIR3 SINE MIR 2 186 -22 269 227 239 0 chr11 92063404 92063492 -56719980 - MLT1I LTR MaLR 0 409 301 * 408 295 29 0 chr11 92063487 92063626 -56719846 - MLT1I LTR MaLR -266 143 1 2103 38 52 24 chr11 92063906 92064195 -56719277 - AluY SINE Alu -14 297 1 198 171 0 0 chr11 92064906 92064947 -56718525 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 1705 154 35 0 chr11 92065005 92065291 -56718181 + AluSx SINE Alu 1 296 -16 235 347 66 51 chr11 92065382 92065656 -56717816 - L2 LINE L2 -185 3087 2810 1845 161 0 7 chr11 92065983 92066287 -56717185 - AluSx SINE Alu -10 302 1 235 250 0 56 chr11 92066456 92066528 -56716944 + L2 LINE L2 3239 3306 -7 859 153 0 0 chr11 92067006 92067143 -56716329 + FRAM SINE Alu 1 137 -39 21 71 0 0 chr11 92067158 92067200 -56716272 + AT_rich Low_complexity Low_complexity 1 42 0 2036 237 49 64 chr11 92067670 92067998 -56715474 + MER21B LTR ERV1 1 317 -546 2575 39 0 0 chr11 92067998 92068303 -56715169 + AluY SINE Alu 1 305 -6 2036 237 49 64 chr11 92068303 92068585 -56714887 + MER21B LTR ERV1 317 602 -261 3070 155 2 58 chr11 92068586 92069193 -56714279 + L1 LINE L1 4760 5332 -814 807 122 0 0 chr11 92069193 92069300 -56714172 + AluSp SINE Alu 2 108 -205 1369 223 27 3 chr11 92069656 92069971 -56713501 + AluJb SINE Alu 6 312 0 301 319 49 37 chr11 92070725 92070888 -56712584 + L2 LINE L2 3144 3308 -5 2171 116 0 0 chr11 92071169 92071479 -56711993 - AluSx SINE Alu -2 310 1 383 305 65 74 chr11 92071531 92072096 -56711376 + L2 LINE L2 2698 3246 -67 223 306 97 0 chr11 92072103 92072175 -56711297 - MIR SINE MIR -54 208 130 321 281 123 53 chr11 92072288 92072342 -56711130 + MIR SINE MIR 28 77 -185 2229 105 0 0 chr11 92072342 92072647 -56710825 - AluSx SINE Alu -7 305 1 321 281 123 53 chr11 92072647 92072763 -56710709 + MIR SINE MIR 77 210 -52 1411 122 36 27 chr11 92072826 92073048 -56710424 - AluSx SINE Alu -88 224 1 553 242 194 19 chr11 92073392 92073603 -56709869 + MIR SINE MIR 7 254 -8 449 297 48 7 chr11 92074497 92074642 -56708830 + MIR SINE MIR 85 235 -27 2068 85 43 0 chr11 92074676 92074957 -56708515 + AluSp SINE Alu 1 293 -20 271 368 0 26 chr11 92075991 92076105 -56707367 + L2 LINE L2 3191 3301 -12 785 322 98 34 chr11 92076361 92076771 -56706701 + L3 LINE CR1 1141 1576 -1 267 336 26 18 chr11 92076862 92076975 -56706497 + L2 LINE L2 3155 3268 -4 180 333 17 0 chr11 92077410 92077470 -56706002 + L2 LINE L2 3211 3271 -1 252 262 24 71 chr11 92077476 92077560 -56705912 + MIR SINE MIR 18 97 -111 345 328 40 25 chr11 92077658 92077856 -56705616 - L2 LINE L2 -746 2568 2368 1624 170 13 35 chr11 92078682 92078993 -56704479 - AluJo SINE Alu -8 304 1 1920 141 0 0 chr11 92078993 92079283 -56704189 - AluJb SINE Alu -22 290 1 295 217 192 25 chr11 92079318 92079438 -56704034 - L1ME4a LINE L1 0 6121 5982 513 291 18 1 chr11 92079474 92079615 -56703857 - MIR SINE MIR -36 172 32 22 0 0 0 chr11 92080599 92080621 -56702851 + AT_rich Low_complexity Low_complexity 1 22 0 1883 138 7 3 chr11 92080627 92080918 -56702554 - AluSx SINE Alu -20 292 1 2480 125 25 5 chr11 92080919 92081078 -56702394 - L1MA6 LINE L1 -350 5950 5796 186 43 0 0 chr11 92081078 92081101 -56702371 + (TA)n Simple_repeat Simple_repeat 2 24 0 2480 125 25 5 chr11 92081101 92081334 -56702138 - L1MA6 LINE L1 -504 5796 5550 411 337 34 31 chr11 92081780 92082130 -56701342 + LTR67 LTR ERVL 124 554 -3 365 323 51 21 chr11 92082242 92082428 -56701044 - MIR SINE MIR -46 216 31 215 250 21 0 chr11 92082482 92082530 -56700942 - L2 LINE L2 -3 3310 3262 1624 259 83 9 chr11 92082714 92083169 -56700303 + LTR16C LTR ERVL 3 491 0 247 303 97 40 chr11 92083427 92083602 -56699870 + L2 LINE L2 2866 3050 -222 234 274 95 24 chr11 92083751 92083835 -56699637 + L2 LINE L2 3138 3227 -45 287 288 45 36 chr11 92083853 92083964 -56699508 - MIR SINE MIR -121 141 30 372 312 88 0 chr11 92084518 92084643 -56698829 - LTR16A LTR ERVL -314 136 1 21 57 0 0 chr11 92084751 92084786 -56698686 + AT_rich Low_complexity Low_complexity 1 35 0 1188 277 74 54 chr11 92084933 92085156 -56698316 + L2 LINE L2 2644 2861 -452 1647 197 94 23 chr11 92085156 92085592 -56697880 - MLT1C LTR MaLR 0 467 1 1188 277 74 54 chr11 92085592 92085965 -56697507 + L2 LINE L2 2861 3312 -1 2079 92 7 0 chr11 92086237 92086549 -56696923 + AluSx SINE Alu 1 314 0 1622 199 19 6 chr11 92086810 92087126 -56696346 + MLT2D LTR ERVL 1 320 -94 2341 177 31 0 chr11 92087128 92087546 -56695926 + MSTB2 LTR MaLR 1 431 -26 426 140 0 158 chr11 92087624 92087738 -56695734 + MLT2D LTR ERVL 319 414 0 2181 94 37 0 chr11 92088127 92088425 -56695047 - AluSp SINE Alu -4 309 1 429 331 23 8 chr11 92088466 92088599 -56694873 + MIR3 SINE MIR 62 196 -12 2004 82 0 0 chr11 92088610 92088867 -56694605 - AluSx SINE Alu -1 311 55 2110 109 0 31 chr11 92089437 92089759 -56693713 - AluSx SINE Alu 0 312 1 274 255 9 170 chr11 92089844 92090056 -56693416 + MIR SINE MIR 28 205 -57 414 329 100 26 chr11 92090721 92090973 -56692499 - L2 LINE L2 -236 3036 2804 744 241 35 10 chr11 92090973 92091172 -56692300 + MER105 DNA DNA 1 204 0 414 329 100 26 chr11 92091172 92091399 -56692073 - L2 LINE L2 -468 2804 2521 2028 138 0 0 chr11 92091506 92091802 -56691670 + AluSx SINE Alu 1 296 -16 441 234 38 63 chr11 92092200 92092358 -56691114 + MIR3 SINE MIR 49 202 -6 250 285 168 10 chr11 92092823 92092919 -56690553 + MIR SINE MIR 5 113 -95 315 0 0 0 chr11 92092924 92092959 -56690513 + (TG)n Simple_repeat Simple_repeat 1 35 0 186 71 0 0 chr11 92092959 92092987 -56690485 + (CAGAGA)n Simple_repeat Simple_repeat 2 29 0 2070 110 0 0 chr11 92093005 92093287 -56690185 - AluSx SINE Alu -30 282 1 303 308 19 10 chr11 92093289 92093393 -56690079 + MIR SINE MIR 110 214 -48 336 258 72 67 chr11 92093937 92094060 -56689412 - MIR3 SINE MIR -34 174 47 322 345 87 23 chr11 92094245 92094509 -56688963 - L2 LINE L2 -484 2830 2550 2322 155 10 0 chr11 92094539 92094925 -56688547 - L1MA5 LINE L1 -2 6298 5909 1608 166 0 11 chr11 92095409 92095680 -56687792 + AluSx SINE Alu 6 273 -39 611 83 0 0 chr11 92095704 92095788 -56687684 + AluY SINE Alu 2 85 -226 200 203 354 13 chr11 92096284 92096363 -56687109 - MER5A DNA MER1_type -80 109 4 210 37 0 0 chr11 92096466 92096493 -56686979 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 571 295 44 11 chr11 92096656 92096839 -56686633 + MIR3 SINE MIR 17 205 -3 190 302 105 0 chr11 92098474 92098560 -56684912 + L2 LINE L2 2960 3054 -218 907 180 77 11 chr11 92098683 92098866 -56684606 + MIR SINE MIR 68 262 0 205 284 0 111 chr11 92098876 92098918 -56684554 + L2 LINE L2 3201 3231 -41 333 269 138 25 chr11 92098918 92099078 -56684394 - MER5B DNA MER1_type 0 178 1 205 284 0 111 chr11 92099078 92099116 -56684356 + L2 LINE L2 3231 3272 0 846 77 0 10 chr11 92099148 92099252 -56684220 + U6 snRNA snRNA 2 104 -3 1557 154 4 0 chr11 92099799 92100033 -56683439 + AluJo SINE Alu 1 235 -77 380 198 36 9 chr11 92100256 92100337 -56683135 + L1MC/D LINE L1 4497 4583 -1563 2173 131 3 0 chr11 92100337 92100634 -56682838 + AluSx SINE Alu 1 298 -14 380 198 36 9 chr11 92100634 92100663 -56682809 + L1MC/D LINE L1 4583 4610 -1536 477 285 55 22 chr11 92100719 92101087 -56682385 + L1MC/D LINE L1 5217 5597 -743 517 290 83 30 chr11 92101184 92101353 -56682119 + MIR SINE MIR 6 183 -79 576 161 0 0 chr11 92101364 92101451 -56682021 + AluJ/FLAM SINE Alu 2 88 -224 777 149 0 85 chr11 92101691 92101832 -56681640 + FLAM_C SINE Alu 1 129 -4 2178 127 7 0 chr11 92103081 92103389 -56680083 - AluSx SINE Alu -2 310 1 861 273 62 4 chr11 92103508 92103750 -56679722 - MIR SINE MIR -2 260 5 224 323 0 0 chr11 92104798 92104860 -56678612 - L2 LINE L2 -217 3055 2994 495 45 0 0 chr11 92104860 92104926 -56678546 + (TG)n Simple_repeat Simple_repeat 2 67 0 524 218 247 6 chr11 92105084 92105254 -56678218 + MIR SINE MIR 15 225 -37 185 390 85 8 chr11 92105382 92105500 -56677972 - L2 LINE L2 -39 3233 3107 1669 208 74 108 chr11 92105855 92106218 -56677254 + MLT1F LTR MaLR 7 346 -196 838 113 0 85 chr11 92106218 92106359 -56677113 + FLAM_C SINE Alu 1 129 -4 1669 208 74 108 chr11 92106359 92106549 -56676923 + MLT1F LTR MaLR 346 541 -1 398 345 82 6 chr11 92106583 92106754 -56676718 + L2 LINE L2 3087 3270 -2 488 307 68 11 chr11 92106812 92106988 -56676484 - MIR SINE MIR -76 186 1 180 342 0 40 chr11 92107265 92107341 -56676131 - MIR SINE MIR -117 91 19 370 245 31 31 chr11 92108566 92108664 -56674808 + MIR SINE MIR 57 154 -108 1799 160 0 7 chr11 92108681 92108969 -56674503 - AluJb SINE Alu -26 286 1 2082 132 0 0 chr11 92109508 92109796 -56673676 - AluSx SINE Alu -24 288 1 209 343 19 65 chr11 92110075 92110183 -56673289 - MIR SINE MIR -86 122 20 494 273 135 100 chr11 92110484 92110795 -56672677 - L2 LINE L2 -13 3259 2938 194 146 62 0 chr11 92111523 92111571 -56671901 + L2 LINE L2 3263 3313 0 6821 68 24 11 chr11 92111664 92112750 -56670722 + L1PA13 LINE L1 5048 6144 -19 717 223 0 8 chr11 92113202 92113323 -56670149 + FLAM_A SINE Alu 1 120 -13 686 204 13 0 chr11 92113325 92113482 -56669990 + (TATG)n Simple_repeat Simple_repeat 2 160 0 617 221 31 160 chr11 92113916 92113981 -56669491 - MIR SINE MIR 0 262 190 2238 104 0 0 chr11 92113981 92114268 -56669204 + AluSx SINE Alu 1 287 -25 617 221 31 160 chr11 92114268 92114496 -56668976 - MIR SINE MIR -72 190 7 663 103 0 0 chr11 92114850 92114937 -56668535 + AluSg SINE Alu 2 88 -222 618 319 34 4 chr11 92115283 92115518 -56667954 - MIR SINE MIR 0 262 21 378 0 0 0 chr11 92115530 92115572 -56667900 + (T)n Simple_repeat Simple_repeat 1 42 0 358 94 91 15 chr11 92115725 92115972 -56667500 + (TA)n Simple_repeat Simple_repeat 1 265 0 26 64 0 0 chr11 92115972 92116019 -56667453 + AT_rich Low_complexity Low_complexity 1 47 0 384 22 0 0 chr11 92116183 92116228 -56667244 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 29793 53 4 1 chr11 92116229 92120719 -56662753 - L1PA5 LINE L1 -16 6138 1635 2040 113 3 10 chr11 92120870 92121161 -56662311 - AluSq SINE Alu -8 305 17 285 303 40 59 chr11 92121400 92121552 -56661920 - L2 LINE L2 -179 3093 2945 223 238 188 25 chr11 92121823 92121903 -56661569 - L2 LINE L2 -558 2756 2664 1884 134 7 24 chr11 92121979 92122270 -56661202 + AluSx SINE Alu 1 286 -26 186 43 0 0 chr11 92122273 92122296 -56661176 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 303 261 102 76 chr11 92122385 92122438 -56661034 + MER105 DNA DNA 2 52 -152 642 257 21 27 chr11 92122438 92122625 -56660847 + MER5A DNA MER1_type 4 189 0 303 261 102 76 chr11 92122625 92122728 -56660744 + MER105 DNA DNA 52 162 -42 391 309 122 29 chr11 92122799 92122970 -56660502 + L1M4c LINE L1 1425 1579 -1164 2256 95 14 0 chr11 92122970 92123265 -56660207 - AluSp SINE Alu -14 299 1 391 309 122 29 chr11 92123265 92123450 -56660022 + L1M4c LINE L1 1579 2018 -725 779 187 15 22 chr11 92123661 92123795 -56659677 + FLAM_A SINE Alu 1 133 0 192 291 127 0 chr11 92123795 92123874 -56659598 - L2 LINE L2 -2841 473 385 1859 124 4 4 chr11 92123890 92124157 -56659315 + AluSx SINE Alu 1 267 -45 2622 59 0 0 chr11 92124390 92124697 -56658775 + AluY SINE Alu 1 307 -4 250 293 57 81 chr11 92124698 92124944 -56658528 + L1M4c LINE L1 3689 3928 -2454 1031 230 49 61 chr11 92125028 92125288 -56658184 - L1MC5 LINE L1 -35 7926 7664 1801 171 17 3 chr11 92125288 92125586 -56657886 - AluJo SINE Alu -10 302 1 234 0 0 0 chr11 92125591 92125617 -56657855 + (TA)n Simple_repeat Simple_repeat 2 27 0 1794 155 3 59 chr11 92125617 92125939 -56657533 - AluJo SINE Alu -8 304 1 1031 230 49 61 chr11 92125939 92126097 -56657375 - L1MC5 LINE L1 -299 7662 7506 1293 187 80 64 chr11 92126113 92126551 -56656921 - L1MC5 LINE L1 -589 7372 6928 470 147 314 10 chr11 92126574 92126676 -56656796 + Looper DNA T2_type 4 136 -1422 2285 103 7 0 chr11 92126676 92126977 -56656495 + AluSq SINE Alu 1 303 -10 609 191 23 15 chr11 92127003 92127134 -56656338 - L1MA10 LINE L1 -11 6323 6192 2850 188 28 73 chr11 92127146 92127316 -56656156 - L1ME1 LINE L1 -190 5976 5800 2274 118 0 0 chr11 92127316 92127613 -56655859 - AluSg SINE Alu -13 297 1 2850 188 28 73 chr11 92127613 92127904 -56655568 - L1ME1 LINE L1 -366 5800 5498 2173 118 3 10 chr11 92127904 92128210 -56655262 - AluSq SINE Alu -9 304 1 2850 188 28 73 chr11 92128210 92128368 -56655104 - L1ME1 LINE L1 -668 5498 5392 2024 124 13 10 chr11 92128368 92128667 -56654805 - AluSx SINE Alu -12 300 1 2850 188 28 73 chr11 92128667 92128789 -56654683 - L1ME1 LINE L1 -774 5392 5266 297 167 0 0 chr11 92128792 92128846 -56654626 + (TATATG)n Simple_repeat Simple_repeat 3 56 0 1199 175 71 79 chr11 92128854 92129232 -56654240 - L1ME1 LINE L1 -874 5272 4898 1848 169 3 10 chr11 92129327 92129628 -56653844 + AluJb SINE Alu 1 299 -13 1780 188 7 3 chr11 92130371 92130679 -56652793 - 7SLRNA srpRNA srpRNA 0 320 12 1893 181 3 0 chr11 92131277 92131587 -56651885 + AluJb SINE Alu 1 311 -1 2316 88 0 0 chr11 92131972 92132266 -56651206 + AluSg SINE Alu 1 294 -16 2183 108 0 0 chr11 92132396 92132708 -56650764 + AluSx SINE Alu 1 312 0 843 153 0 36 chr11 92133325 92133462 -56650010 + FLAM_A SINE Alu 1 132 -1 280 317 20 0 chr11 92133579 92133680 -56649792 - MIR SINE MIR -10 252 150 2512 66 0 0 chr11 92133689 92133994 -56649478 - AluY SINE Alu -6 305 1 394 209 96 85 chr11 92134106 92134283 -56649189 - L1MC/D LINE L1 -2016 5792 5614 2057 140 0 19 chr11 92134637 92134809 -56648663 - AluSx SINE Alu -10 302 137 2167 92 0 41 chr11 92134809 92135123 -56648349 - AluSg1 SINE Alu -8 301 1 2057 140 0 19 chr11 92135123 92135258 -56648214 - AluSx SINE Alu -175 137 1 321 341 74 7 chr11 92136014 92136149 -56647323 + MIR SINE MIR 63 206 -56 367 312 203 22 chr11 92136199 92137023 -56646449 - L2 LINE L2 -798 2516 1544 647 289 163 29 chr11 92137182 92137562 -56645910 + L3 LINE CR1 1143 1573 -4 250 270 0 0 chr11 92138344 92138407 -56645065 + (TAAA)n Simple_repeat Simple_repeat 3 65 0 2986 135 14 2 chr11 92138497 92138920 -56644552 + MSTA LTR MaLR 1 428 0 429 306 48 0 chr11 92139058 92139182 -56644290 + MIR3 SINE MIR 78 207 -1 216 0 0 0 chr11 92139262 92139286 -56644186 + (TA)n Simple_repeat Simple_repeat 1 24 0 * 390 42 0 0 chr11 92139285 92139333 -56644139 + (GA)n Simple_repeat Simple_repeat 2 49 0 186 411 50 7 chr11 92139634 92139775 -56643697 - L2 LINE L2 -296 3017 2871 569 264 102 38 chr11 92140439 92140674 -56642798 - MIR SINE MIR 0 262 13 569 274 6 17 chr11 92140711 92140886 -56642586 + MIR SINE MIR 90 262 0 207 0 0 0 chr11 92141733 92141756 -56641716 + (A)n Simple_repeat Simple_repeat 1 23 0 3055 178 28 14 chr11 92142342 92142848 -56640624 + MLT2B2 LTR ERVL 1 513 -2 2215 124 0 13 chr11 92143217 92143531 -56639941 - AluSx SINE Alu -2 310 1 1665 191 6 22 chr11 92144447 92144761 -56638711 - AluJo SINE Alu -3 309 1 336 291 114 51 chr11 92144776 92144934 -56638538 + MER5B DNA MER1_type 8 175 -3 392 248 255 6 chr11 92145247 92145404 -56638068 - MER117 DNA MER1_type -1 196 1 351 298 19 0 chr11 92145513 92145617 -56637855 + L2 LINE L2 2174 2279 -1035 243 296 56 37 chr11 92145695 92145803 -56637669 + L2 LINE L2 3153 3262 -10 702 271 70 50 chr11 92145910 92146396 -56637076 + MLT1H LTR MaLR 1 537 -12 473 269 67 7 chr11 92148174 92148323 -56635149 + MIR SINE MIR 6 163 -99 931 279 175 49 chr11 92148354 92148909 -56634563 - L3 LINE CR1 -2 1575 951 * 2198 232 98 22 chr11 92148906 92149732 -56633740 + L2 LINE L2 820 1708 -1606 282 287 103 0 chr11 92149763 92149850 -56633622 - MIR SINE MIR -127 135 40 1010 182 36 62 chr11 92151146 92151304 -56632168 - MER20 DNA MER1_type 0 219 67 1826 185 0 7 chr11 92151304 92151607 -56631865 + AluJb SINE Alu 1 301 -11 1010 182 36 62 chr11 92151607 92151673 -56631799 - MER20 DNA MER1_type -152 67 1 219 167 0 0 chr11 92151760 92151802 -56631670 + CT-rich Low_complexity Low_complexity 2 43 0 288 254 0 14 chr11 92151830 92151901 -56631571 - L2 LINE L2 -21 3292 3223 389 284 52 13 chr11 92152647 92152802 -56630670 + MIR SINE MIR 54 214 -48 184 229 104 0 chr11 92152851 92152899 -56630573 - MIR SINE MIR -21 241 189 483 291 176 26 chr11 92152989 92153291 -56630181 + LTR16B LTR ERVL 109 455 -9 546 279 19 0 chr11 92153291 92153452 -56630020 - MIR SINE MIR -97 165 2 284 267 73 76 chr11 92154541 92154702 -56628770 - MIR SINE MIR -51 157 39 991 146 5 36 chr11 92155158 92155350 -56628122 - MER53 DNA DNA -3 186 1 387 248 101 16 chr11 92155481 92155610 -56627862 + MIR SINE MIR 29 168 -94 202 344 84 15 chr11 92155754 92155885 -56627587 - MIR3 SINE MIR -30 178 39 349 211 77 10 chr11 92156878 92156982 -56626490 + MIR3 SINE MIR 89 199 -9 536 200 55 0 chr11 92157751 92157896 -56625576 + MIR SINE MIR 2 154 -108 203 317 17 0 chr11 92158197 92158257 -56625215 + L2 LINE L2 3247 3307 -6 466 201 65 32 chr11 92158528 92158682 -56624790 + MIR SINE MIR 35 193 -69 210 333 33 0 chr11 92159194 92159284 -56624188 - MIR3 SINE MIR -21 187 95 2165 117 0 0 chr11 92159532 92159842 -56623630 + AluSx SINE Alu 1 310 0 771 299 69 6 chr11 92159941 92160275 -56623197 + L1ME4a LINE L1 5577 5931 -190 1968 142 0 10 chr11 92160373 92160682 -56622790 - AluSx SINE Alu -6 306 1 206 280 0 0 chr11 92162091 92162141 -56621331 - L2 LINE L2 -7 3265 3216 256 275 0 14 chr11 92162232 92162301 -56621171 - L2 LINE L2 0 3313 3246 201 330 94 52 chr11 92163799 92164205 -56619267 + L2 LINE L2 2555 2977 -337 212 323 120 28 chr11 92164446 92164573 -56618899 + MIR SINE MIR 14 128 -134 351 0 0 0 chr11 92164573 92164612 -56618860 + (TAA)n Simple_repeat Simple_repeat 3 41 0 212 323 120 28 chr11 92164612 92164701 -56618771 + MIR SINE MIR 128 250 -12 441 350 123 22 chr11 92164972 92165526 -56617946 + L2 LINE L2 2277 2886 -428 310 296 0 11 chr11 92166403 92166491 -56616981 + CT-rich Low_complexity Low_complexity 2 88 0 515 233 141 12 chr11 92166509 92166672 -56616800 + MIR SINE MIR 40 223 -39 1133 241 132 17 chr11 92166681 92167030 -56616442 + LTR16A LTR ERVL 7 395 -55 203 186 161 50 chr11 92167680 92167775 -56615697 + MIR SINE MIR 43 136 -72 2321 104 0 13 chr11 92167792 92168108 -56615364 - AluSx SINE Alu 0 312 1 2181 115 14 0 chr11 92168109 92168405 -56615067 - AluSx SINE Alu -12 300 1 543 245 34 72 chr11 92168738 92168946 -56614526 - Charlie8 DNA MER1_type -2185 232 33 259 293 208 9 chr11 92169889 92169995 -56613477 + MER91A DNA MER1_type 48 174 -22 195 283 38 0 chr11 92170061 92170114 -56613358 + L2 LINE L2 3214 3268 -4 1684 168 28 7 chr11 92171121 92171406 -56612066 + AluJb SINE Alu 6 296 -16 254 210 0 32 chr11 92171690 92171752 -56611720 + L2 LINE L2 3007 3066 -206 1290 249 103 59 chr11 92172378 92172784 -56610688 + MER115 DNA AcHobo 8 431 -262 249 33 0 0 chr11 92172813 92172843 -56610629 + (CA)n Simple_repeat Simple_repeat 1 30 0 849 255 98 86 chr11 92172848 92173358 -56610114 + L1ME LINE L1 103 618 -5452 21 36 0 0 chr11 92173399 92173427 -56610045 + AT_rich Low_complexity Low_complexity 1 28 0 1322 303 97 54 chr11 92173458 92173957 -56609515 + L2 LINE L2 1716 2192 -1080 1174 179 9 31 chr11 92173957 92174181 -56609291 - MER20 DNA MER1_type 0 219 1 1322 303 97 54 chr11 92174181 92174832 -56608640 + L2 LINE L2 2192 2940 -332 2185 183 81 121 chr11 92174832 92175590 -56607882 + LTR8A LTR ERV1 1 727 0 1322 303 97 54 chr11 92175590 92175661 -56607811 + L2 LINE L2 2940 3007 -265 255 323 108 77 chr11 92175775 92175905 -56607567 + L2 LINE L2 3138 3271 -1 1128 179 51 17 chr11 92176222 92176457 -56607015 + MER34C LTR ERV1 37 279 -306 520 195 101 27 chr11 92176817 92176966 -56606506 - MIR3 SINE MIR -33 175 16 1964 114 49 80 chr11 92177341 92177728 -56605744 + THE1C LTR MaLR 1 375 0 596 297 42 46 chr11 92177988 92178247 -56605225 + MIR SINE MIR 3 260 -2 441 225 25 27 chr11 92178810 92178969 -56604503 + MIR SINE MIR 34 192 -55 2166 112 0 11 chr11 92179815 92180100 -56603372 - AluSx SINE Alu -30 282 1 957 261 81 27 chr11 92180503 92180874 -56602598 + MLT1I LTR MaLR 2 392 -17 244 227 196 10 chr11 92181149 92181246 -56602226 + L2 LINE L2 3180 3294 -19 285 383 7 0 chr11 92181304 92181453 -56602019 + MIR SINE MIR 113 262 0 680 285 45 87 chr11 92181573 92182089 -56601383 + MER34 LTR ERV1 20 513 -29 1551 184 85 24 chr11 92182147 92182522 -56600950 + MLT1C LTR MaLR 68 465 -2 213 278 0 0 chr11 92183755 92183809 -56599663 - L2 LINE L2 -32 3240 3187 339 262 103 24 chr11 92184246 92184372 -56599100 + MIR3 SINE MIR 67 202 -6 398 274 16 70 chr11 92184398 92184517 -56598955 + MIR SINE MIR 29 136 -126 2351 54 0 20 chr11 92184517 92184805 -56598667 + AluY SINE Alu 1 306 0 254 0 54 0 chr11 92184805 92184864 -56598608 + (CAAAA)n Simple_repeat Simple_repeat 2 62 0 398 274 16 70 chr11 92184869 92184935 -56598537 + MIR SINE MIR 136 204 -58 401 203 27 0 chr11 92185303 92185377 -56598095 - MER2 DNA MER2_type 0 345 270 2158 128 0 0 chr11 92185377 92185686 -56597786 + AluSx SINE Alu 1 309 0 3265 77 11 22 chr11 92185767 92186220 -56597252 - L1PA8 LINE L1 0 6172 5725 1041 104 13 0 chr11 92186221 92186375 -56597097 - MER2 DNA MER2_type -148 197 42 378 275 138 5 chr11 92188501 92188690 -56594782 + MIR SINE MIR 18 231 -31 944 165 18 30 chr11 92188748 92188979 -56594493 + L1M2 LINE L1 2723 2957 -3891 2192 114 7 3 chr11 92188990 92189289 -56594183 + AluSq SINE Alu 1 300 -13 43747 49 5 0 chr11 92189292 92195415 -56588057 + L1PA3 LINE L1 1 6155 0 1465 138 134 46 chr11 92195424 92195729 -56587743 - MER4B LTR ERV1 -278 332 1 398 222 37 9 chr11 92195931 92196039 -56587433 - MIR SINE MIR -56 206 96 1982 198 12 5 chr11 92196167 92196567 -56586905 - L1MB5 LINE L1 -26 6148 5746 304 288 124 46 chr11 92196994 92197147 -56586325 - MIR SINE MIR -66 196 32 198 171 0 0 chr11 92197532 92197567 -56585905 - MIR SINE MIR -66 142 108 186 133 0 0 chr11 92198352 92198382 -56585090 + (TTG)n Simple_repeat Simple_repeat 1 30 0 189 0 0 0 chr11 92198760 92198781 -56584691 + (T)n Simple_repeat Simple_repeat 1 21 0 207 250 237 0 chr11 92198872 92198948 -56584524 - L3 LINE CR1 -10 1567 1474 197 65 32 0 chr11 92199020 92199051 -56584421 + (TA)n Simple_repeat Simple_repeat 2 33 0 331 278 26 9 chr11 92199052 92199167 -56584305 - L3 LINE CR1 -206 1371 1255 702 289 24 5 chr11 92200256 92200467 -56583005 - MIR SINE MIR -1 261 47 205 316 0 0 chr11 92200750 92200807 -56582665 + L2 LINE L2 3253 3309 -4 431 275 147 14 chr11 92200961 92201179 -56582293 + L1ME3A LINE L1 5624 5870 -300 21 0 0 0 chr11 92201183 92201204 -56582268 + AT_rich Low_complexity Low_complexity 1 21 0 501 291 28 0 chr11 92201207 92201348 -56582124 - MIR SINE MIR 0 262 118 2929 100 28 107 chr11 92202345 92202915 -56580557 + L1MA9 LINE L1 5783 6307 -5 482 223 33 8 chr11 92203047 92203168 -56580304 + MIR SINE MIR 77 200 -62 7144 63 11 0 chr11 92203243 92204583 -56578889 - L1PA8A LINE L1 -2 6129 4785 6086 99 2 2 chr11 92204583 92205432 -56578040 + L1PA8A LINE L1 3946 4794 -1352 246 287 9 83 chr11 92205483 92205591 -56577881 - MIR SINE MIR -132 130 31 208 289 0 0 chr11 92206546 92206598 -56576874 - L3 LINE CR1 -2 1575 1524 538 216 14 29 chr11 92206647 92206786 -56576686 - MIR SINE MIR -52 210 74 474 301 155 13 chr11 92207271 92207646 -56575826 - L1ME4a LINE L1 -71 6050 5623 2427 178 13 15 chr11 92207905 92208360 -56575112 + L1MD3 LINE L1 7537 7990 -5 234 0 0 0 chr11 92208360 92208386 -56575086 + (T)n Simple_repeat Simple_repeat 1 26 0 12559 35 29 0 chr11 92208539 92210711 -56572761 + L1PA4 LINE L1 3949 6153 -2 6880 179 35 20 chr11 92210718 92211506 -56571966 + L1 LINE L1 2254 3074 -3072 1896 131 28 0 chr11 92211506 92211788 -56571684 + AluSx SINE Alu 6 295 -17 6880 179 35 20 chr11 92211788 92212473 -56570999 + L1 LINE L1 3074 3748 -2398 2942 129 27 116 chr11 92212487 92212800 -56570672 - Tigger3(Golem) DNA MER2_type -27 3002 2663 231 36 0 0 chr11 92212800 92212828 -56570644 + (TA)n Simple_repeat Simple_repeat 1 28 0 2942 129 27 116 chr11 92212828 92213107 -56570365 - Tigger3(Golem) DNA MER2_type -366 2663 2472 2000 137 0 0 chr11 92213107 92213414 -56570058 + AluSx SINE Alu 1 307 0 2942 129 27 116 chr11 92213414 92213485 -56569987 - Tigger3(Golem) DNA MER2_type -557 2472 2396 202 222 167 71 chr11 92213618 92213744 -56569728 + MER5A DNA MER1_type 52 189 0 288 331 24 39 chr11 92214635 92214762 -56568710 - L2 LINE L2 -35 3237 3113 8313 17 0 0 chr11 92214893 92216010 -56567462 + L1PA2 LINE L1 5035 6151 -4 36 40 0 0 chr11 92216026 92216076 -56567396 + AT_rich Low_complexity Low_complexity 1 50 0 241 264 19 94 chr11 92216148 92216254 -56567218 + MIR SINE MIR 30 127 -81 190 234 191 35 chr11 92216978 92217119 -56566353 + MIR SINE MIR 36 198 -64 593 255 132 56 chr11 92217627 92217878 -56565594 - MLT1L LTR MaLR -338 277 8 778 124 0 0 chr11 92218524 92218637 -56564835 + MER30 DNA MER1_type 1 113 -117 2106 114 29 44 chr11 92218699 92219042 -56564430 + LTR32 LTR ERVL 11 348 -123 668 217 19 32 chr11 92219045 92219202 -56564270 + LTR32 LTR ERVL 317 471 0 33020 110 7 62 chr11 92219569 92225680 -56557792 + L1P3 LINE L1 12 5782 -372 2552 75 0 0 chr11 92225680 92225986 -56557486 + AluY SINE Alu 1 306 -5 2145 112 0 11 chr11 92226286 92226571 -56556901 - AluSx SINE Alu -30 282 1 957 261 81 27 chr11 92226974 92227345 -56556127 + MLT1I LTR MaLR 2 392 -17 276 227 196 10 chr11 92227620 92227717 -56555755 + L2 LINE L2 3180 3294 -19 319 383 7 0 chr11 92227775 92227924 -56555548 + MIR SINE MIR 113 262 0 692 285 45 87 chr11 92228044 92228560 -56554912 + MER34 LTR ERV1 20 513 -29 1551 184 85 24 chr11 92228618 92228993 -56554479 + MLT1C LTR MaLR 68 465 -2 232 278 0 0 chr11 92230226 92230280 -56553192 - L2 LINE L2 -32 3240 3187 191 317 57 24 chr11 92230450 92230573 -56552899 + L2 LINE L2 3059 3185 -87 377 262 103 24 chr11 92230717 92230843 -56552629 + MIR3 SINE MIR 67 202 -6 321 313 27 9 chr11 92230869 92230981 -56552491 + MIR SINE MIR 29 142 -120 887 36 0 36 chr11 92230988 92231098 -56552374 + AluY SINE Alu 1 106 -205 36 0 0 0 chr11 92231388 92231424 -56552048 + AT_rich Low_complexity Low_complexity 1 36 0 403 203 27 0 chr11 92231876 92231950 -56551522 - MER2 DNA MER2_type 0 345 270 2188 136 0 3 chr11 92231950 92232260 -56551212 + AluSx SINE Alu 1 309 -3 6784 89 5 0 chr11 92232338 92233508 -56549964 - L1PA8 LINE L1 0 6487 5317 4429 97 5 12 chr11 92233513 92234151 -56549321 - L1PA8 LINE L1 -1800 4661 4029 2192 128 3 0 chr11 92234133 92234470 -56549002 - L1PA8 LINE L1 -4839 1622 1285 * 202 222 167 71 chr11 92234604 92234730 -56548742 - MER5A DNA MER1_type 0 189 52 1909 172 30 97 chr11 92234863 92234934 -56548538 + Tigger3(Golem) DNA MER2_type 2396 2470 -559 1997 137 0 0 chr11 92234934 92235241 -56548231 - AluSx SINE Alu 0 307 1 1909 172 30 97 chr11 92235241 92235743 -56547729 + Tigger3(Golem) DNA MER2_type 2470 2931 -98 288 0 0 0 chr11 92235891 92235923 -56547549 + (A)n Simple_repeat Simple_repeat 1 32 0 285 308 20 55 chr11 92235957 92236103 -56547369 + MIR SINE MIR 117 257 -5 2396 144 58 36 chr11 92236151 92236313 -56547159 + MSTA LTR MaLR 1 158 -270 2165 97 24 3 chr11 92236313 92236603 -56546869 - AluSg SINE Alu -14 296 1 2396 144 58 36 chr11 92236603 92236857 -56546615 + MSTA LTR MaLR 158 426 -2 2295 135 33 28 chr11 92237020 92237382 -56546090 + THE1B LTR MaLR 1 364 0 278 284 12 25 chr11 92237693 92237774 -56545698 + L2 LINE L2 3188 3267 -5 194 105 53 35 chr11 92239139 92239196 -56544276 + CT-rich Low_complexity Low_complexity 1 58 0 329 283 33 17 chr11 92239566 92239686 -56543786 + MER117 DNA MER1_type 29 150 -47 187 359 47 9 chr11 92239759 92239865 -56543607 - MIR3 SINE MIR -48 160 51 215 271 181 42 chr11 92240026 92240170 -56543302 - MER5A DNA MER1_type -25 164 1 578 271 15 0 chr11 92240472 92240605 -56542867 + MIR SINE MIR 17 151 -111 2924 174 24 18 chr11 92240611 92241116 -56542356 + MLT2B2 LTR ERVL 1 508 -7 187 204 31 82 chr11 92241118 92241216 -56542256 + MIR SINE MIR 170 262 0 247 263 18 0 chr11 92242406 92242463 -56541009 - L2 LINE L2 -494 2820 2763 333 176 186 39 chr11 92243078 92243180 -56540292 + MIR SINE MIR 21 137 -125 * 388 248 67 0 chr11 92243179 92243284 -56540188 - L2 LINE L2 0 3313 3202 862 219 72 25 chr11 92243354 92243591 -56539881 + MIR SINE MIR 5 252 -10 1228 233 124 26 chr11 92243700 92244212 -56539260 + LTR50 LTR ERVL 1 675 -120 895 218 133 0 chr11 92244212 92244400 -56539072 - MER58C DNA MER1_type 0 215 3 1228 233 124 26 chr11 92244400 92244535 -56538937 + LTR50 LTR ERVL 675 795 0 248 284 59 39 chr11 92245592 92245694 -56537778 - L2 LINE L2 -35 3237 3134 879 250 11 0 chr11 92245998 92246174 -56537298 + MER5B DNA MER1_type 1 178 0 267 186 225 54 chr11 92249084 92249213 -56534259 + MER5A DNA MER1_type 17 167 -22 392 254 223 36 chr11 92249272 92249340 -56534132 - MIR SINE MIR 0 262 208 2133 129 0 0 chr11 92249340 92249627 -56533845 - AluSq SINE Alu -26 287 1 392 254 223 36 chr11 92249627 92249751 -56533721 - MIR SINE MIR -54 208 34 271 238 200 50 chr11 92250074 92250234 -56533238 + MIR3 SINE MIR 21 204 -4 802 266 49 8 chr11 92250838 92251082 -56532390 - MIR SINE MIR -7 255 2 262 255 0 0 chr11 92251702 92251753 -56531719 + polypurine Low_complexity Low_complexity 2 52 0 1242 151 73 0 chr11 92252617 92252809 -56530663 + AluJb SINE Alu 1 206 -106 751 219 128 24 chr11 92252826 92253053 -56530419 + MLT1B LTR MaLR 175 374 -16 1281 196 162 17 chr11 92253053 92253399 -56530073 + MSTD LTR MaLR 1 396 0 253 261 208 15 chr11 92253406 92253536 -56529936 - MIR SINE MIR -63 145 37 212 287 83 37 chr11 92253883 92253991 -56529481 + MIR SINE MIR 131 243 -19 504 286 54 21 chr11 92254225 92254430 -56529042 + MIR SINE MIR 3 211 -39 197 292 0 46 chr11 92254457 92254522 -56528950 - MIR SINE MIR -155 107 46 246 333 10 29 chr11 92254784 92254886 -56528586 - L2 LINE L2 0 3272 3173 239 208 19 0 chr11 92255497 92255550 -56527922 + (TA)n Simple_repeat Simple_repeat 2 55 0 375 23 0 0 chr11 92255565 92255609 -56527863 + (CA)n Simple_repeat Simple_repeat 1 44 0 357 24 0 0 chr11 92256149 92256191 -56527281 + (CA)n Simple_repeat Simple_repeat 1 42 0 771 257 20 36 chr11 92256811 92257064 -56526408 - MIR SINE MIR -6 256 8 988 174 11 16 chr11 92260726 92260910 -56522562 + AluJb SINE Alu 122 304 -8 276 189 38 0 chr11 92261948 92262001 -56521471 + L2 LINE L2 3214 3268 -4 367 265 68 0 chr11 92262042 92262159 -56521313 + MIR SINE MIR 68 192 -70 712 323 50 23 chr11 92262342 92262872 -56520600 + L2 LINE L2 2506 3049 -264 29501 125 21 80 chr11 92262950 92265455 -56518017 + L1P LINE L1 9 2008 -4138 1718 73 0 34 chr11 92265455 92265689 -56517783 + AluY SINE Alu 76 301 -10 29501 125 21 80 chr11 92265689 92268796 -56514676 + L1P LINE L1 2008 5294 -852 44045 52 1 1 chr11 92268797 92274949 -56508523 + L1PA4 LINE L1 5 6155 0 530 241 148 0 chr11 92275991 92276153 -56507319 - MIR3 SINE MIR -7 201 16 612 150 245 7 chr11 92276249 92276396 -56507076 + MER5A DNA MER1_type 1 182 -7 391 237 11 11 chr11 92277337 92277430 -56506042 - MER5B DNA MER1_type 0 178 86 420 302 73 17 chr11 92277593 92277772 -56505700 - MIR3 SINE MIR -10 198 10 450 238 203 15 chr11 92279411 92279613 -56503859 - MIR SINE MIR -11 251 12 1418 198 70 63 chr11 92279630 92280089 -56503383 + MER31B LTR ERV1 1 462 -4 594 258 72 16 chr11 92281192 92281386 -56502086 + MIR SINE MIR 2 206 -56 440 268 118 7 chr11 92281863 92282016 -56501456 - MIR SINE MIR -7 255 86 274 354 31 48 chr11 92282261 92282490 -56500982 - L2 LINE L2 -179 3093 2869 573 290 109 0 chr11 92284209 92284402 -56499070 - MIR SINE MIR -38 224 11 361 228 11 22 chr11 92284851 92284943 -56498529 + MIR SINE MIR 47 137 -125 599 234 46 69 chr11 92285074 92285249 -56498223 - MER63A DNA MER1_type -39 171 1 235 259 0 0 chr11 92286034 92286092 -56497380 - L2 LINE L2 -4 3268 3211 * 618 249 124 0 chr11 92286060 92286261 -56497211 - MIR SINE MIR -24 238 13 297 279 58 10 chr11 92286285 92286389 -56497083 + MIR SINE MIR 4 112 -150 259 301 0 29 chr11 92287242 92287345 -56496127 + MIR SINE MIR 47 146 -116 2645 155 15 90 chr11 92287394 92287412 -56496060 - L1MC3 LINE L1 -16 7769 7751 2070 135 37 45 chr11 92287412 92287790 -56495682 + THE1C LTR MaLR 1 375 0 2645 155 15 90 chr11 92287790 92288009 -56495463 - L1MC3 LINE L1 -34 7751 7517 384 22 0 0 chr11 92288009 92288054 -56495418 + (TG)n Simple_repeat Simple_repeat 2 46 0 2645 155 15 90 chr11 92288054 92288429 -56495043 - L1MC3 LINE L1 -268 7517 7202 * 8091 174 32 25 chr11 92288418 92289964 -56493508 - L1MC3 LINE L1 -845 6940 5385 5229 122 15 6 chr11 92289979 92290776 -56492696 - L1PA16 LINE L1 -9 6157 5354 3411 208 7 3 chr11 92290782 92291499 -56491973 - L1PA16 LINE L1 -1022 5124 4405 496 159 44 0 chr11 92291493 92291606 -56491866 - L1MC3 LINE L1 -956 5388 5271 * 3432 191 38 17 chr11 92291576 92292489 -56490983 + L1MB4 LINE L1 4538 5491 -689 207 100 0 0 chr11 92292489 92292519 -56490953 + (CA)n Simple_repeat Simple_repeat 2 31 0 3432 191 38 17 chr11 92292519 92292940 -56490532 + L1MB4 LINE L1 5491 5902 -278 287 53 0 0 chr11 92292939 92292977 -56490495 + L1MB8 LINE L1 6120 6157 -21 * 526 256 8 0 chr11 92292996 92293125 -56490347 - L1MC3 LINE L1 -869 5277 5148 270 310 50 0 chr11 92293905 92294005 -56489467 - MIR SINE MIR -79 183 79 2285 116 3 0 chr11 92294240 92294550 -56488922 + AluSp SINE Alu 1 311 -2 339 25 0 0 chr11 92294550 92294590 -56488882 + (GGAA)n Simple_repeat Simple_repeat 1 40 0 513 236 85 65 chr11 92295241 92295440 -56488032 + Charlie7 DNA MER1_type 201 403 -2209 394 264 95 27 chr11 92296110 92296258 -56487214 - L2 LINE L2 -2 3270 3113 282 261 57 0 chr11 92296308 92296396 -56487076 + MIR SINE MIR 156 248 -14 602 286 28 28 chr11 92296938 92297155 -56486317 - MIR SINE MIR 0 262 46 213 262 82 0 chr11 92298189 92298277 -56485195 + MIR SINE MIR 30 130 -78 279 363 52 0 chr11 92298430 92298565 -56484907 + L2 LINE L2 3172 3313 0 268 333 29 0 chr11 92298567 92298669 -56484803 - L2 LINE L2 0 3313 3209 1047 112 73 28 chr11 92298751 92298930 -56484542 + MER3 DNA MER1_type 23 209 0 6591 89 5 5 chr11 92299578 92300735 -56482737 - L1PA8 LINE L1 0 6487 5317 4459 97 3 11 chr11 92300740 92301378 -56482094 - L1PA8 LINE L1 -1800 4661 4029 3458 130 28 21 chr11 92301360 92301722 -56481750 - L1PA8 LINE L1 -4839 1622 1253 * 192 40 0 0 chr11 92301722 92301747 -56481725 + (TTG)n Simple_repeat Simple_repeat 3 27 0 3458 130 28 21 chr11 92301747 92301953 -56481519 - L1PA8 LINE L1 -5208 1253 1050 209 270 72 81 chr11 92303044 92303155 -56480317 + L2 LINE L2 3162 3271 -1 390 292 67 15 chr11 92303219 92303414 -56480058 + MIR SINE MIR 3 207 -55 206 219 73 37 chr11 92305141 92305223 -56478249 - MIR SINE MIR -110 152 68 23 0 0 0 chr11 92305501 92305524 -56477948 + AT_rich Low_complexity Low_complexity 1 23 0 339 289 25 41 chr11 92306182 92306303 -56477169 - MIR SINE MIR -91 171 53 309 327 118 0 chr11 92306356 92306466 -56477006 - L2 LINE L2 -2 3270 3148 263 321 24 33 chr11 92306644 92306787 -56476685 + MIR SINE MIR 15 155 -76 275 254 0 0 chr11 92307973 92308028 -56475444 - MIR SINE MIR -161 101 47 317 234 180 0 chr11 92308402 92308530 -56474942 - MER112 DNA MER1_type -43 217 67 378 276 87 0 chr11 92308636 92308763 -56474709 + MIR SINE MIR 3 140 -122 351 274 181 22 chr11 92308925 92309195 -56474277 + L2 LINE L2 2269 2581 -733 216 313 25 12 chr11 92309631 92309711 -56473761 - MER5A DNA MER1_type -11 178 98 210 91 0 0 chr11 92310462 92310495 -56472977 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 529 68 81 0 chr11 92310600 92310674 -56472798 - MADE1 DNA Mariner 0 80 1 5347 157 36 3 chr11 92311045 92312268 -56471204 + L1MB1 LINE L1 4901 6168 0 1310 303 97 40 chr11 92312425 92313429 -56470043 - L2 LINE L2 -494 2820 1760 220 335 72 34 chr11 92314390 92314599 -56468873 - L2 LINE L2 -222 3050 2834 428 275 50 0 chr11 92315214 92315334 -56468138 + MIR SINE MIR 47 172 -90 509 202 54 23 chr11 92315364 92315493 -56467979 - L2 LINE L2 -4 3268 3136 261 263 175 18 chr11 92316525 92316639 -56466833 + L2 LINE L2 3123 3254 -18 207 161 0 0 chr11 92316650 92316681 -56466791 + polypurine Low_complexity Low_complexity 1 31 0 293 0 27 0 chr11 92316686 92316723 -56466749 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 255 272 107 19 chr11 92317547 92317650 -56465822 - L2 LINE L2 -19 3253 3142 2133 175 8 30 chr11 92318582 92318883 -56464589 + MLT1B LTR MaLR 1 292 -98 2270 115 60 17 chr11 92318883 92319232 -56464240 - THE1B LTR MaLR 0 364 1 2133 175 8 30 chr11 92319232 92319329 -56464143 + MLT1B LTR MaLR 292 390 0 393 292 0 44 chr11 92320162 92320299 -56463173 + MIR SINE MIR 9 139 -123 577 208 92 29 chr11 92320908 92321115 -56462357 - L1ME4a LINE L1 -64 6057 5838 428 200 15 104 chr11 92321298 92321433 -56462039 - L2 LINE L2 0 3313 3191 321 315 68 7 chr11 92321434 92321580 -56461892 - L1ME4a LINE L1 -506 5615 5461 1587 167 56 33 chr11 92321712 92322017 -56461455 + AluJb SINE Alu 1 312 0 185 119 24 0 chr11 92322463 92322505 -56460967 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 243 88 0 0 chr11 92322577 92322611 -56460861 + (TA)n Simple_repeat Simple_repeat 1 34 0 234 0 0 0 chr11 92322610 92322636 -56460836 + (GA)n Simple_repeat Simple_repeat 2 27 0 * 647 233 207 0 chr11 92322636 92322829 -56460643 - MIR SINE MIR -25 237 5 203 205 0 0 chr11 92322893 92322932 -56460540 - L2 LINE L2 -19 3294 3256 572 296 0 7 chr11 92323925 92324077 -56459395 - MIR3 SINE MIR -6 202 52 238 236 13 41 chr11 92324657 92324746 -56458726 + MLT1J LTR MaLR 58 180 -308 1395 120 17 20 chr11 92324961 92325249 -56458223 - MER4E LTR ERV1 0 766 500 44777 42 3 2 chr11 92325263 92331409 -56452063 + L1PA3 LINE L1 3 6155 0 36 40 0 0 chr11 92331425 92331475 -56451997 + AT_rich Low_complexity Low_complexity 1 50 0 209 264 19 94 chr11 92331548 92331654 -56451818 + MIR SINE MIR 30 127 -81 214 240 196 23 chr11 92332377 92332510 -56450962 + MIR SINE MIR 50 198 -64 593 255 132 56 chr11 92333018 92333269 -56450203 - MLT1L LTR MaLR -338 277 8 716 120 9 0 chr11 92333919 92334027 -56449445 + MER30 DNA MER1_type 5 113 -117 2117 114 29 44 chr11 92334089 92334432 -56449040 + LTR32 LTR ERVL 11 348 -123 677 217 19 32 chr11 92334435 92334592 -56448880 + LTR32 LTR ERVL 317 471 0 32911 106 7 60 chr11 92334959 92341069 -56442403 + L1PA7 LINE L1 12 5756 -398 2401 81 0 16 chr11 92341069 92341378 -56442094 + AluY SINE Alu 1 304 -7 32911 106 7 60 chr11 92341378 92341758 -56441714 + L1PA7 LINE L1 5756 6154 0 530 241 148 0 chr11 92342799 92342961 -56440511 - MIR3 SINE MIR -7 201 16 612 150 245 7 chr11 92343057 92343204 -56440268 + MER5A DNA MER1_type 1 182 -7 391 237 11 11 chr11 92344145 92344238 -56439234 - MER5B DNA MER1_type 0 178 86 420 302 73 17 chr11 92344401 92344580 -56438892 - MIR3 SINE MIR -10 198 10 434 235 156 22 chr11 92346242 92346421 -56437051 - MIR SINE MIR -48 214 12 1418 198 70 63 chr11 92346438 92346897 -56436575 + MER31B LTR ERV1 1 462 -4 594 258 72 16 chr11 92348000 92348194 -56435278 + MIR SINE MIR 2 206 -56 440 268 118 7 chr11 92348671 92348824 -56434648 - MIR SINE MIR -7 255 86 183 324 6 67 chr11 92349069 92349248 -56434224 - L2 LINE L2 -179 3093 2926 2472 93 3 11 chr11 92349374 92349728 -56433744 + L1PA7 LINE L1 5804 6154 0 415 351 15 0 chr11 92349873 92350007 -56433465 + L2 LINE L2 3137 3272 0 2027 128 14 0 chr11 92350229 92350519 -56432953 - AluSx SINE Alu -18 294 1 185 261 62 0 chr11 92350543 92350608 -56432864 + MIR SINE MIR 194 262 0 254 270 14 0 chr11 92351912 92351986 -56431486 + (TAGA)n Simple_repeat Simple_repeat 3 77 0 438 263 146 28 chr11 92352516 92352672 -56430800 - MIR SINE MIR -54 208 40 321 342 114 0 chr11 92353490 92353639 -56429833 + Tigger8 DNA MER2_type 446 611 -55 504 0 0 0 chr11 92353928 92353984 -56429488 + (TATTG)n Simple_repeat Simple_repeat 1 56 0 217 233 0 0 chr11 92354108 92354151 -56429321 + MIR3 SINE MIR 160 202 -6 744 229 50 118 chr11 92354298 92354443 -56429029 + MIR SINE MIR 3 122 -140 1610 156 4 33 chr11 92354443 92354719 -56428753 + AluJo SINE Alu 40 307 -5 744 229 50 118 chr11 92354719 92354852 -56428620 + MIR SINE MIR 122 262 0 1117 252 178 27 chr11 92357206 92358015 -56425457 - L2 LINE L2 0 3313 2386 187 400 11 0 chr11 92358015 92358110 -56425362 - L2 LINE L2 -678 2636 2541 855 229 124 34 chr11 92358185 92358583 -56424889 + MLT1J LTR MaLR 32 495 -16 188 267 184 34 chr11 92359628 92359834 -56423638 - L2 LINE L2 -2 3311 3075 319 261 67 22 chr11 92360441 92360575 -56422897 + MER112 DNA MER1_type 110 249 -11 2119 121 60 30 chr11 92361453 92361817 -56421655 - THE1C LTR MaLR 0 375 1 413 310 92 88 chr11 92362028 92362595 -56420877 + MLT1K LTR MaLR 2 570 -18 471 224 126 7 chr11 92363187 92363330 -56420142 + MIR3 SINE MIR 43 202 -6 333 208 84 90 chr11 92363370 92363548 -56419924 - MIR SINE MIR 0 262 86 716 210 140 21 chr11 92364779 92364965 -56418507 - MER3 DNA MER1_type -1 208 1 798 288 73 22 chr11 92365081 92365642 -56417830 + L2 LINE L2 2671 3308 -5 208 271 0 0 chr11 92365969 92366017 -56417455 - MER5A DNA MER1_type -50 139 92 307 258 16 57 chr11 92366022 92366146 -56417326 + MLT1K LTR MaLR 466 584 -4 851 160 0 0 chr11 92366757 92366888 -56416584 - FLAM_C SINE Alu -12 131 1 671 256 0 55 chr11 92366917 92367116 -56416356 - MLT1J LTR MaLR -315 196 9 205 348 102 0 chr11 92367578 92367696 -56415776 + L2 LINE L2 3138 3267 -5 221 324 148 0 chr11 92368134 92368242 -56415230 + L2 LINE L2 2926 3049 -223 250 303 49 33 chr11 92368376 92368498 -56414974 + MIR SINE MIR 53 176 -86 183 294 0 73 chr11 92368511 92368579 -56414893 - L2 LINE L2 0 3313 3251 * 298 196 18 0 chr11 92368551 92368607 -56414865 - MIR SINE MIR -29 233 177 636 228 172 4 chr11 92368608 92368841 -56414631 + LTR50 LTR ERVL 7 278 -517 378 268 67 28 chr11 92368956 92369135 -56414337 + LTR33A LTR ERVL 327 512 -11 319 240 260 0 chr11 92369144 92369248 -56414224 - MIR SINE MIR -98 164 34 1588 137 133 0 chr11 92371586 92371849 -56411623 + AluJb SINE Alu 1 298 -14 837 269 137 18 chr11 92371865 92372092 -56411380 + MIR SINE MIR 9 262 0 351 0 0 0 chr11 92372308 92372347 -56411125 + (CA)n Simple_repeat Simple_repeat 2 40 0 1043 234 174 56 chr11 92374869 92375317 -56408155 - MLT1D LTR MaLR 0 505 5 861 295 78 49 chr11 92375930 92376381 -56407091 - L3 LINE CR1 -495 1082 619 303 232 0 74 chr11 92377417 92377512 -56405960 + L1MC4 LINE L1 6615 6702 -1340 264 185 0 0 chr11 92377516 92377570 -56405902 + (TA)n Simple_repeat Simple_repeat 1 54 0 230 232 10 38 chr11 92377883 92378003 -56405469 + L1MC4 LINE L1 6614 6703 -1339 * 234 271 47 0 chr11 92377961 92378046 -56405426 - L1MC4 LINE L1 -1339 6703 6615 227 300 0 0 chr11 92378059 92378149 -56405323 + L1MC4 LINE L1 6614 6703 -1339 229 82 41 41 chr11 92378149 92378198 -56405274 + (CATATA)n Simple_repeat Simple_repeat 2 50 0 238 262 48 0 chr11 92378200 92378284 -56405188 - L1MC4 LINE L1 -1340 6702 6615 269 253 11 0 chr11 92378287 92378374 -56405098 + (TA)n Simple_repeat Simple_repeat 2 89 0 383 264 65 69 chr11 92378539 92378755 -56404717 + L2 LINE L2 3081 3295 -18 249 33 0 0 chr11 92379597 92379627 -56403845 + (TG)n Simple_repeat Simple_repeat 2 31 0 298 262 111 24 chr11 92381040 92381166 -56402306 - MIR SINE MIR 0 262 126 1565 168 48 53 chr11 92381720 92382078 -56401394 - MLT1A1 LTR MaLR 0 365 10 22 0 0 0 chr11 92382335 92382357 -56401115 + AT_rich Low_complexity Low_complexity 1 22 0 289 296 101 6 chr11 92382952 92383111 -56400361 - L1MC4 LINE L1 -1897 5911 5738 320 374 43 29 chr11 92383178 92383523 -56399949 - L1MC4 LINE L1 -2164 5644 5295 1378 198 29 36 chr11 92383679 92383987 -56399485 + L1ME LINE L1 5443 5748 -416 261 0 0 0 chr11 92384377 92384406 -56399066 + (T)n Simple_repeat Simple_repeat 1 29 0 1227 84 0 12 chr11 92384632 92384799 -56398673 - AluY SINE Alu -1 310 146 206 276 141 41 chr11 92385360 92385530 -56397942 - L2 LINE L2 -404 2910 2724 2827 182 45 13 chr11 92386059 92386614 -56396858 - L1MD3 LINE L1 -19 7976 7404 358 212 24 12 chr11 92386614 92386699 -56396773 - MLT1F1 LTR MaLR -442 125 40 2268 90 3 0 chr11 92386733 92387022 -56396450 + AluSq SINE Alu 14 303 -10 451 269 62 0 chr11 92387969 92388114 -56395358 - MIR SINE MIR -14 248 95 1165 205 152 52 chr11 92389040 92389421 -56394051 + MLT1J1 LTR MaLR 21 439 -7 2096 113 3 0 chr11 92390230 92390553 -56392919 + AluSx SINE Alu 1 324 0 190 286 0 0 chr11 92390905 92390947 -56392525 + L2 LINE L2 3138 3179 -93 2661 189 87 16 chr11 92390989 92391940 -56391532 + L1MD2 LINE L1 4867 5865 -494 221 184 0 0 chr11 92392632 92392670 -56390802 - MIR SINE MIR -59 149 112 336 250 40 13 chr11 92392792 92392868 -56390604 - MIR SINE MIR -113 95 18 22 35 0 0 chr11 92393527 92393556 -56389916 + AT_rich Low_complexity Low_complexity 1 29 0 324 0 0 0 chr11 92393573 92393609 -56389863 + (TG)n Simple_repeat Simple_repeat 2 37 0 201 282 26 26 chr11 92395535 92395613 -56387859 + MIR SINE MIR 172 249 -13 2274 186 39 7 chr11 92395648 92396083 -56387389 - MER66A LTR ERV1 -3 475 27 297 0 0 0 chr11 92396579 92396612 -56386860 + (T)n Simple_repeat Simple_repeat 1 33 0 592 263 80 27 chr11 92396615 92396839 -56386633 + MIR SINE MIR 16 251 -11 1884 155 30 3 chr11 92397559 92397863 -56385609 + AluSx SINE Alu 1 312 0 1677 100 9 4 chr11 92447874 92448104 -56335368 - AluSx SINE Alu -81 231 1 1982 239 27 21 chr11 92448104 92448557 -56334915 - L1MB3 LINE L1 -352 5831 5382 2344 85 0 0 chr11 92448557 92448850 -56334622 - AluY SINE Alu -18 293 1 1982 239 27 21 chr11 92448850 92449397 -56334075 - L1MB3 LINE L1 -801 5382 4818 2212 100 7 10 chr11 92449435 92449735 -56333737 + AluSp SINE Alu 1 299 -14 430 183 12 0 chr11 92449747 92449829 -56333643 - LTR50 LTR ERVL -712 83 1 1559 194 5 69 chr11 92449843 92450066 -56333406 - L1MA4 LINE L1 -153 6147 5960 1847 154 0 18 chr11 92450066 92450351 -56333121 - AluSx SINE Alu -32 280 1 1559 194 5 69 chr11 92450351 92450534 -56332938 - L1MA4 LINE L1 -340 5960 5767 30 0 0 0 chr11 92450540 92450570 -56332902 + AT_rich Low_complexity Low_complexity 1 30 0 495 234 65 7 chr11 92450572 92450726 -56332746 + HsTC2 DNA Tc2 1633 1795 -103 392 209 96 9 chr11 92450886 92451001 -56332471 + MER5B DNA MER1_type 50 174 -4 700 250 17 0 chr11 92451109 92451285 -56332187 - MER6B DNA MER2_type 0 210 32 2607 159 104 16 chr11 92452471 92456214 -56327258 + SATR1 Satellite Satellite 1 4071 0 2071 188 259 12 chr11 92456238 92457467 -56326005 + SATR1 Satellite Satellite 1 1532 -1 983 205 274 0 chr11 92457490 92457867 -56325605 + SATR1 Satellite Satellite 1 480 -398 374 221 94 67 chr11 92458547 92458696 -56324776 - MIR SINE MIR -1 261 109 1595 214 24 165 chr11 92459154 92459742 -56323730 - MLT1D LTR MaLR 0 505 1 392 281 128 56 chr11 92459814 92460010 -56323462 + MIR SINE MIR 9 218 -44 296 208 0 139 chr11 92461129 92461230 -56322242 - L2 LINE L2 0 3272 3186 2363 154 54 9 chr11 92461235 92461656 -56321816 + MSTB1 LTR MaLR 1 432 0 1971 146 17 0 chr11 92462218 92462512 -56320960 + AluJo SINE Alu 1 299 -13 203 300 50 119 chr11 92463349 92463435 -56320037 + MIR SINE MIR 9 99 -163 1683 162 0 4 chr11 92463435 92463700 -56319772 - AluJb SINE Alu -15 297 34 203 300 50 119 chr11 92463700 92463873 -56319599 + MIR SINE MIR 99 250 -12 485 336 0 0 chr11 92463984 92464118 -56319354 - L2 LINE L2 -3 3269 3136 197 254 36 0 chr11 92464206 92464261 -56319211 - MIR SINE MIR -129 133 77 257 307 202 26 chr11 92464434 92464548 -56318924 + L2 LINE L2 3139 3272 0 266 329 24 0 chr11 92464556 92464638 -56318834 - MIR SINE MIR -90 118 35 1531 299 52 42 chr11 92465244 92466200 -56317272 - L1MEc LINE L1 -5143 1253 288 234 329 22 22 chr11 92466244 92466381 -56317091 - L1MEc LINE L1 -6209 187 51 337 295 41 41 chr11 92466396 92466518 -56316954 - L2 LINE L2 -277 3036 2915 483 279 75 35 chr11 92466613 92466814 -56316658 + MIR SINE MIR 6 214 -48 534 268 61 32 chr11 92467384 92467605 -56315867 + MIR SINE MIR 16 245 -17 245 281 0 10 chr11 92467797 92467893 -56315579 - L1MC4 LINE L1 -1334 6708 6614 1800 147 49 14 chr11 92467922 92468208 -56315264 - AluSx SINE Alu -16 296 1 313 276 53 98 chr11 92468227 92468473 -56314999 + MLT1K LTR MaLR 188 422 -166 882 280 28 67 chr11 92468561 92468918 -56314554 - LTR16B LTR ERVL 0 464 122 497 136 100 55 chr11 92468922 92469032 -56314440 + MER53 DNA DNA 1 115 -74 290 57 0 0 chr11 92469022 92469057 -56314415 - MER53 DNA DNA -150 39 5 * 266 302 31 0 chr11 92469091 92469187 -56314285 - LTR16B LTR ERVL -365 99 1 240 293 27 0 chr11 92469196 92469271 -56314201 + MLT1K LTR MaLR 509 585 -3 2722 242 30 3 chr11 92469271 92469846 -56313626 - MLT1G LTR MaLR 0 590 1 1293 77 0 0 chr11 92469846 92470002 -56313470 + AluSq SINE Alu 133 288 -25 23 0 0 0 chr11 92470572 92470595 -56312877 + AT_rich Low_complexity Low_complexity 1 23 0 298 352 34 23 chr11 92470623 92470799 -56312673 + MIR SINE MIR 49 226 -36 276 294 59 35 chr11 92470832 92470917 -56312555 - L2 LINE L2 -15 3257 3171 359 159 11 80 chr11 92471021 92471109 -56312363 + MIR SINE MIR 105 186 -76 577 161 0 0 chr11 92471179 92471272 -56312200 + MER5A DNA MER1_type 13 105 -84 408 214 58 29 chr11 92471795 92471898 -56311574 + L2 LINE L2 3121 3226 -46 2026 218 41 65 chr11 92472094 92472796 -56310676 - L1M4 LINE L1 -1128 5018 4334 2845 50 6 0 chr11 92472911 92473252 -56310220 + HERV17 LTR ERV1 5677 6019 -2607 303 51 0 0 chr11 92473245 92473284 -56310188 + HERV17 LTR ERV1 7510 7548 -1078 * 2502 34 3 3 chr11 92473274 92473566 -56309906 + HERV17 LTR ERV1 8335 8626 0 2584 48 29 0 chr11 92473566 92473879 -56309593 + LTR17 LTR ERV1 1 322 -458 1099 211 211 37 chr11 92474921 92475526 -56307946 - SATR1 Satellite Satellite -5 710 1 1185 187 300 2 chr11 92475556 92476029 -56307443 - SATR1 Satellite Satellite -3 614 1 1073 200 311 8 chr11 92476060 92476657 -56306815 - SATR1 Satellite Satellite -1 777 1 45089 38 1 3 chr11 92476681 92482840 -56300632 + L1PA3 LINE L1 9 6155 0 274 40 0 60 chr11 92482929 92482979 -56300493 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1285 170 0 18 chr11 92482981 92483210 -56300262 - AluJb SINE Alu -2 310 86 231 36 0 0 chr11 92483286 92483314 -56300158 + (T)n Simple_repeat Simple_repeat 1 28 0 501 246 57 0 chr11 92483454 92483576 -56299896 - L1ME3A LINE L1 -5 6165 6037 267 79 0 0 chr11 92484111 92484149 -56299323 + (TC)n Simple_repeat Simple_repeat 1 38 0 336 210 0 0 chr11 92484952 92485014 -56298458 - L2 LINE L2 0 3313 3252 2096 115 4 0 chr11 92485636 92485915 -56297557 - AluSx SINE Alu -20 292 13 608 240 32 24 chr11 92486343 92486468 -56297004 - FLAM_A SINE Alu -5 128 3 428 309 41 21 chr11 92486862 92487196 -56296276 + MLT1K LTR MaLR 161 527 -61 198 0 0 0 chr11 92487196 92487218 -56296254 + (T)n Simple_repeat Simple_repeat 1 22 0 2292 110 7 3 chr11 92487349 92487657 -56295815 - AluSx SINE Alu -3 309 1 290 376 54 23 chr11 92487725 92488111 -56295361 + L2 LINE L2 2461 2858 -456 188 339 25 51 chr11 92488219 92488337 -56295135 + L2 LINE L2 3009 3123 -149 364 322 30 56 chr11 92488878 92489111 -56294361 - MIR SINE MIR -32 230 4 364 258 58 32 chr11 92489332 92489526 -56293946 + MLT1L LTR MaLR 374 615 0 217 330 126 0 chr11 92489546 92489728 -56293744 + MIR SINE MIR 30 231 -31 8902 96 34 16 chr11 92489826 92491084 -56292388 - HSMAR1 DNA Mariner -5 1282 2 787 292 121 17 chr11 92493139 92493611 -56289861 + LTR33 LTR ERVL 1 521 0 1390 149 79 5 chr11 92493954 92494168 -56289304 - AluJb SINE Alu -20 292 63 436 232 10 0 chr11 92494225 92494324 -56289148 + MER103 DNA DNA 3 102 -64 181 287 33 115 chr11 92494811 92494933 -56288539 - L2 LINE L2 -2 3270 3159 214 261 87 14 chr11 92495047 92495116 -56288356 - L2 LINE L2 -223 3049 2976 234 208 0 0 chr11 92496272 92496325 -56287147 + (TAA)n Simple_repeat Simple_repeat 1 53 0 565 307 93 9 chr11 92496335 92496550 -56286922 - MIR SINE MIR -17 245 13 254 318 24 40 chr11 92496676 92496802 -56286670 - MIR3 SINE MIR -71 137 14 190 263 66 26 chr11 92497160 92497236 -56286236 - MIR3 SINE MIR -5 203 125 223 345 92 29 chr11 92497251 92497425 -56286047 + MIR SINE MIR 2 186 -76 265 0 0 0 chr11 92497431 92497464 -56286008 + AluY SINE Alu 1 33 -269 198 222 0 0 chr11 92497591 92497627 -56285845 + L2 LINE L2 3261 3296 -17 738 263 116 4 chr11 92498644 92498876 -56284596 - MIR SINE MIR 0 262 5 239 278 0 0 chr11 92498906 92498960 -56284512 + L2 LINE L2 3252 3305 -8 23 33 0 0 chr11 92499107 92499137 -56284335 + AT_rich Low_complexity Low_complexity 1 30 0 1831 154 11 7 chr11 92499609 92499894 -56283578 - AluJo SINE Alu -26 286 1 722 203 85 0 chr11 92500011 92500164 -56283308 + FRAM SINE Alu 1 166 0 305 345 25 0 chr11 92500331 92500450 -56283022 + MIR SINE MIR 45 166 -96 234 0 0 0 chr11 92508916 92508942 -56274530 + (TG)n Simple_repeat Simple_repeat 2 27 0 285 285 23 39 chr11 92511137 92511267 -56272205 - MER103 DNA DNA -37 129 2 339 294 92 0 chr11 92512086 92512205 -56271267 + MER94 DNA DNA 1 130 -4 671 164 10 0 chr11 92512539 92512643 -56270829 + AluSq/x SINE Alu 2 106 -207 276 100 0 0 chr11 92512752 92512792 -56270680 + (A)n Simple_repeat Simple_repeat 1 40 0 1168 265 122 86 chr11 92513365 92513501 -56269971 - L2 LINE L2 -468 2846 2716 1360 149 90 12 chr11 92513501 92513756 -56269716 - ORSL DNA AcHobo 0 275 1 1168 265 122 86 chr11 92513756 92514454 -56269018 - L2 LINE L2 -598 2716 1982 191 227 204 0 chr11 92514492 92514580 -56268892 - L2 LINE L2 -604 2710 2605 623 229 142 42 chr11 92515156 92515396 -56268076 + L2 LINE L2 3032 3295 -18 284 234 44 102 chr11 92515543 92515680 -56267792 + L2 LINE L2 3095 3223 -49 272 286 76 0 chr11 92516192 92516297 -56267175 - L2 LINE L2 -2 3270 3158 739 276 97 0 chr11 92517699 92517916 -56265556 - MIR SINE MIR -6 256 19 219 327 87 0 chr11 92521978 92522082 -56261390 + MIR SINE MIR 131 243 -19 287 157 39 0 chr11 92522089 92522140 -56261332 - L2 LINE L2 0 3313 3261 212 324 59 10 chr11 92522202 92522304 -56261168 + L3 LINE CR1 1218 1324 -253 1947 146 0 3 chr11 92522304 92522605 -56260867 + AluJb SINE Alu 1 300 -12 662 321 104 32 chr11 92522730 92523135 -56260337 + L2 LINE L2 200 633 -2681 520 303 8 0 chr11 92523146 92523278 -56260194 + L2 LINE L2 3181 3313 0 440 266 36 29 chr11 92523298 92523437 -56260035 - MIR SINE MIR -44 218 79 623 195 17 8 chr11 92523446 92523564 -56259908 - MLT1B LTR MaLR 0 390 272 377 140 114 105 chr11 92523576 92523690 -56259782 - MLT1B LTR MaLR -275 115 1 219 300 17 17 chr11 92523691 92523751 -56259721 - MIR SINE MIR -190 72 13 249 304 21 48 chr11 92523870 92524022 -56259450 + MIR SINE MIR 33 183 -69 444 232 217 34 chr11 92524452 92524659 -56258813 - MIR SINE MIR 0 262 18 190 207 190 17 chr11 92525248 92525306 -56258166 - MER5A DNA MER1_type -29 160 93 2212 91 7 20 chr11 92525316 92525613 -56257859 - AluSp SINE Alu -20 293 1 790 154 0 66 chr11 92525654 92525790 -56257682 + AluSq/x SINE Alu 9 135 -177 22 0 0 0 chr11 92525900 92525922 -56257550 + AT_rich Low_complexity Low_complexity 1 22 0 396 249 32 90 chr11 92525922 92526111 -56257361 + L3 LINE CR1 1315 1492 -85 249 273 162 10 chr11 92526537 92526636 -56256836 - MIR SINE MIR -108 154 41 286 361 52 7 chr11 92526752 92526907 -56256565 - L2 LINE L2 -4 3268 3107 2654 7 0 7 chr11 92527004 92527297 -56256175 + AluY SINE Alu 1 291 -20 907 37 9 0 chr11 92527397 92527506 -56255966 + SVA Other Other 1274 1383 -3 2956 63 27 3 chr11 92527538 92527905 -56255567 - L1PA8 LINE L1 -5 6167 5792 4946 209 18 57 chr11 92527905 92529251 -56254221 - L1M4 LINE L1 -1812 4334 3041 6686 99 0 0 chr11 92529251 92530216 -56253256 - L1PA12 LINE L1 -1 6167 5187 3228 140 14 0 chr11 92530216 92530729 -56252743 + L1PA12 LINE L1 4661 5180 -966 840 168 16 5 chr11 92530735 92530920 -56252552 - L1M4 LINE L1 -3110 3036 2850 2159 102 0 7 chr11 92531344 92531647 -56251825 - AluSx SINE Alu 0 301 1 187 391 69 11 chr11 92532090 92532177 -56251295 + L2 LINE L2 3160 3251 -21 2108 166 23 71 chr11 92532432 92532867 -56250605 + MLT2D LTR ERVL 1 414 0 186 43 0 0 chr11 92533017 92533040 -56250432 + (ATG)n Simple_repeat Simple_repeat 2 24 0 272 282 26 0 chr11 92533047 92533125 -56250347 - MIR SINE MIR -10 252 173 772 187 16 0 chr11 92533127 92533250 -56250222 + FLAM_C SINE Alu 3 127 -16 1474 271 3 24 chr11 92533280 92533652 -56249820 + LTR16A LTR ERVL 87 450 0 2208 111 3 13 chr11 92533700 92534007 -56249465 + AluSq SINE Alu 1 304 -9 533 266 53 41 chr11 92534070 92534239 -56249233 - MIR SINE MIR -90 172 2 203 61 30 0 chr11 92534442 92534475 -56248997 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 2298 111 0 0 chr11 92534813 92535119 -56248353 + AluSq SINE Alu 1 306 -7 192 40 0 0 chr11 92535161 92535186 -56248286 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 236 346 0 37 chr11 92535200 92535281 -56248191 - L2 LINE L2 -194 3078 3001 1391 187 23 109 chr11 92536350 92536745 -56246727 - MLT1A1 LTR MaLR 0 365 5 613 222 0 97 chr11 92536900 92537030 -56246442 - MER5B DNA MER1_type -19 159 49 2163 108 7 10 chr11 92537030 92537326 -56246146 + AluSx SINE Alu 1 295 -17 613 222 0 97 chr11 92537326 92537371 -56246101 - MER5B DNA MER1_type -129 49 1 2049 142 30 18 chr11 92537503 92537834 -56245638 + LTR32 LTR ERVL 15 349 -122 861 198 0 6 chr11 92537836 92537993 -56245479 + LTR32 LTR ERVL 316 471 0 2253 132 32 22 chr11 92538699 92539070 -56244402 + THE1C LTR MaLR 1 375 0 182 284 27 0 chr11 92539666 92539740 -56243732 + MIR SINE MIR 131 206 -56 31 26 0 0 chr11 92539748 92539786 -56243686 + AT_rich Low_complexity Low_complexity 1 38 0 483 265 153 27 chr11 92539870 92539944 -56243528 + MER112 DNA MER1_type 8 71 -189 1756 203 94 27 chr11 92539944 92540382 -56243090 + MLT1C LTR MaLR 1 467 0 483 265 153 27 chr11 92540382 92540530 -56242942 + MER112 DNA MER1_type 71 258 -2 184 70 47 47 chr11 92540668 92540711 -56242761 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 1502 161 38 78 chr11 92540770 92541045 -56242427 - LTR37A LTR ERV1 0 426 170 2299 114 13 0 chr11 92541045 92541353 -56242119 - AluSx SINE Alu 0 312 1 1502 161 38 78 chr11 92541353 92541474 -56241998 - LTR37A LTR ERV1 -256 170 46 262 320 52 0 chr11 92541537 92541634 -56241838 - MLT1J LTR MaLR -81 430 329 188 298 132 16 chr11 92541751 92541872 -56241600 + L2 LINE L2 3011 3145 -168 477 322 45 28 chr11 92542228 92542405 -56241067 + MIR SINE MIR 1 180 -82 189 0 0 0 chr11 92542521 92542542 -56240930 + (T)n Simple_repeat Simple_repeat 1 21 0 2108 141 6 13 chr11 92542689 92543002 -56240470 - AluJb SINE Alu -1 311 1 814 139 0 69 chr11 92544483 92544627 -56238845 - FLAM_C SINE Alu -8 135 2 243 182 0 23 chr11 92544632 92544676 -56238796 + MIR SINE MIR 203 245 -17 1387 178 46 36 chr11 92544709 92544990 -56238482 - AluJo SINE Alu -28 284 1 294 260 202 0 chr11 92545091 92545195 -56238277 - L2 LINE L2 -9 3304 3180 199 265 59 98 chr11 92545885 92545987 -56237485 - L2 LINE L2 -236 3036 2939 1665 177 0 45 chr11 92546537 92546815 -56236657 + AluJb SINE Alu 1 265 -47 2347 86 0 7 chr11 92546815 92547116 -56236356 - AluY SINE Alu -12 299 1 1665 177 0 45 chr11 92547116 92547147 -56236325 + AluJb SINE Alu 265 296 -16 660 317 54 27 chr11 92547722 92548080 -56235392 + L2 LINE L2 2667 3037 -276 2499 82 0 0 chr11 92548201 92548504 -56234968 - AluSx SINE Alu -9 303 1 324 296 29 124 chr11 92548504 92548778 -56234694 + L2 LINE L2 3025 3272 0 259 352 31 23 chr11 92549375 92549503 -56233969 + L2 LINE L2 3137 3265 -7 355 294 98 7 chr11 92550261 92550404 -56233068 + MIR SINE MIR 3 158 -104 201 175 0 0 chr11 92550535 92550575 -56232897 + CT-rich Low_complexity Low_complexity 1 40 0 2385 80 0 3 chr11 92550899 92551198 -56232274 - AluY SINE Alu -11 300 3 194 310 0 46 chr11 92551278 92551365 -56232107 + MIR SINE MIR 156 238 -24 227 262 117 29 chr11 92551664 92551767 -56231705 + MIR SINE MIR 25 136 -72 * 260 351 168 5 chr11 92551758 92551966 -56231506 + L2 LINE L2 2836 3077 -195 808 223 6 30 chr11 92552011 92552177 -56231295 - MER58B DNA MER1_type -3 338 177 1646 198 3 25 chr11 92552183 92552501 -56230971 + AluJo SINE Alu 1 311 -1 239 366 97 0 chr11 92552566 92552659 -56230813 + L2 LINE L2 3121 3222 -50 300 53 0 0 chr11 92553333 92553371 -56230101 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 22 0 0 0 chr11 92553495 92553517 -56229955 + GC_rich Low_complexity Low_complexity 1 22 0 261 290 47 9 chr11 92553956 92554063 -56229409 - MIR3 SINE MIR -54 154 44 294 293 150 30 chr11 92554103 92554270 -56229202 - MIR SINE MIR -20 242 56 290 309 12 0 chr11 92554605 92554686 -56228786 + L2 LINE L2 3232 3313 0 3986 105 54 27 chr11 92554763 92554814 -56228658 - L1MB1 LINE L1 0 6168 6120 1664 176 28 0 chr11 92554814 92555104 -56228368 - AluJo SINE Alu -14 298 1 3986 105 54 27 chr11 92555104 92555678 -56227794 - L1MB1 LINE L1 -48 6120 5526 429 228 154 60 chr11 92556153 92556302 -56227170 + MER5A DNA MER1_type 6 168 -21 229 323 125 0 chr11 92556378 92556474 -56226998 - MIR SINE MIR -68 140 33 328 198 49 12 chr11 92556811 92556892 -56226580 - MIR3 SINE MIR -46 162 79 22 0 0 0 chr11 92557957 92557979 -56225493 + AT_rich Low_complexity Low_complexity 1 22 0 283 310 84 28 chr11 92558139 92558281 -56225191 + L2 LINE L2 3149 3298 -15 30 27 0 0 chr11 92558623 92558660 -56224812 + AT_rich Low_complexity Low_complexity 1 37 0 1948 151 21 30 chr11 92558667 92559004 -56224468 - L1PA16 LINE L1 -18 6148 5815 246 32 0 0 chr11 92559107 92559138 -56224334 + (TG)n Simple_repeat Simple_repeat 1 31 0 1694 165 3 25 chr11 92559138 92559423 -56224049 - AluJo SINE Alu -33 279 1 2782 264 45 51 chr11 92559600 92560831 -56222641 - L1ME LINE L1 -4865 1215 6 250 340 83 26 chr11 92560833 92560989 -56222483 - L2 LINE L2 -598 2716 2552 551 273 154 22 chr11 92561142 92561268 -56222204 - L2 LINE L2 -1153 2161 2053 1915 141 0 66 chr11 92561268 92561601 -56221871 + AluSx SINE Alu 1 311 -1 551 273 154 22 chr11 92561601 92561793 -56221679 - L2 LINE L2 -1261 2053 1801 255 292 188 0 chr11 92562075 92562171 -56221301 - L2 LINE L2 -950 2364 2251 277 306 50 41 chr11 92562711 92562832 -56220640 + MIR SINE MIR 86 207 -55 198 125 75 0 chr11 92562885 92562965 -56220507 + (TA)n Simple_repeat Simple_repeat 2 87 0 369 286 77 51 chr11 92562997 92563113 -56220359 + L1ME4a LINE L1 5715 5840 -281 1949 136 0 21 chr11 92563113 92563424 -56220048 + AluSx SINE Alu 1 305 0 369 286 77 51 chr11 92563424 92563502 -56219970 + L1ME4a LINE L1 5840 5915 -206 221 200 20 0 chr11 92564146 92564196 -56219276 + MIR SINE MIR 91 141 -67 257 311 134 8 chr11 92564201 92564320 -56219152 + L2 LINE L2 3134 3267 -5 2221 85 3 0 chr11 92564384 92564667 -56218805 + AluSx SINE Alu 1 284 -28 229 373 82 9 chr11 92565183 92565293 -56218179 - L2 LINE L2 -18 3254 3137 609 224 163 65 chr11 92565774 92566051 -56217421 + L2 LINE L2 2968 3271 -42 273 291 48 0 chr11 92566088 92566191 -56217281 + HAL1b LINE L1 1233 1340 -8 21 0 0 0 chr11 92566222 92566243 -56217229 + AT_rich Low_complexity Low_complexity 1 21 0 207 200 0 22 chr11 92566787 92566832 -56216640 + CT-rich Low_complexity Low_complexity 4 47 0 517 299 27 0 chr11 92566936 92567083 -56216389 + MIR3 SINE MIR 29 179 -29 224 331 36 58 chr11 92567641 92567780 -56215692 - L2 LINE L2 0 3272 3137 790 262 149 58 chr11 92567985 92568549 -56214923 + L2 LINE L2 1665 2279 -1035 213 354 100 15 chr11 92568609 92568739 -56214733 + L2 LINE L2 3167 3307 -6 267 292 73 0 chr11 92569602 92569698 -56213774 + MIR SINE MIR 48 150 -112 957 140 0 0 chr11 92569700 92569843 -56213629 + FLAM_C SINE Alu 1 143 0 350 226 75 9 chr11 92569845 92569951 -56213521 + MIR SINE MIR 136 248 -14 302 231 64 0 chr11 92570136 92570214 -56213258 + L2 LINE L2 3179 3261 -11 1307 173 25 57 chr11 92570236 92570474 -56212998 + MER33 DNA MER1_type 15 242 -2343 1660 157 46 14 chr11 92570474 92570754 -56212718 - AluJo SINE Alu -13 299 11 1307 173 25 57 chr11 92570754 92570833 -56212639 + MER33 DNA MER1_type 242 322 -2 185 315 126 55 chr11 92570848 92570975 -56212497 + MIR3 SINE MIR 70 205 -3 370 317 44 16 chr11 92571023 92571207 -56212265 - MIR SINE MIR -43 219 30 334 270 167 16 chr11 92571901 92572027 -56211445 + MIR SINE MIR 47 191 -71 324 0 0 0 chr11 92572641 92572677 -56210795 + (TG)n Simple_repeat Simple_repeat 2 37 0 234 311 139 33 chr11 92572953 92573143 -56210329 - MIR SINE MIR 0 262 33 2254 111 0 3 chr11 92573426 92573732 -56209740 + AluSx SINE Alu 1 305 -7 232 341 155 8 chr11 92574583 92574712 -56208760 - MIR SINE MIR -98 164 17 891 123 0 58 chr11 92574854 92574992 -56208480 - FLAM_C SINE Alu -3 130 1 556 84 84 0 chr11 92575086 92575169 -56208303 + AluSq SINE Alu 2 91 -222 931 92 92 0 chr11 92575169 92575300 -56208172 + AluSp/q SINE Alu 154 296 -17 361 207 57 0 chr11 92575415 92575731 -56207741 + (TA)n Simple_repeat Simple_repeat 1 334 0 2551 84 0 0 chr11 92575739 92576050 -56207422 + AluY SINE Alu 1 311 0 450 223 153 122 chr11 92576151 92576174 -56207298 + MLT1K LTR MaLR 191 212 -376 1722 216 27 3 chr11 92576174 92576507 -56206965 - MER58B DNA MER1_type 0 341 1 450 223 153 122 chr11 92576507 92576868 -56206604 + MLT1K LTR MaLR 212 587 -1 429 259 59 7 chr11 92576932 92577067 -56206405 - MIR SINE MIR -7 255 114 296 48 24 0 chr11 92577809 92577851 -56205621 + (TA)n Simple_repeat Simple_repeat 2 44 0 2168 113 10 0 chr11 92577851 92578142 -56205330 - AluSx SINE Alu -13 299 6 346 239 35 35 chr11 92578420 92578533 -56204939 + L2 LINE L2 3160 3272 0 2422 128 13 18 chr11 92579859 92580256 -56203216 + MER61B LTR ERV1 2 396 -29 312 247 0 0 chr11 92580374 92580447 -56203025 + MIR SINE MIR 82 154 -108 2421 80 3 0 chr11 92580480 92580779 -56202693 + AluSp SINE Alu 1 300 -13 303 224 10 107 chr11 92580837 92580890 -56202582 + MIR SINE MIR 37 76 -132 2223 100 7 3 chr11 92580890 92581189 -56202283 - AluSx SINE Alu -8 304 5 303 224 10 107 chr11 92581189 92581249 -56202223 + MIR SINE MIR 76 140 -68 2414 81 0 0 chr11 92581346 92581643 -56201829 - AluSg SINE Alu -13 297 1 21 0 0 0 chr11 92581897 92581918 -56201554 + AT_rich Low_complexity Low_complexity 1 21 0 360 308 30 8 chr11 92582423 92582556 -56200916 - Tigger8 DNA MER2_type -9 657 522 543 141 16 70 chr11 92582984 92583112 -56200360 + MER53 DNA DNA 1 121 -68 602 204 48 14 chr11 92583208 92583355 -56200117 + L1ME4a LINE L1 5623 5774 -390 411 197 0 0 chr11 92583355 92583426 -56200046 - MER5A DNA MER1_type -118 71 1 915 276 55 0 chr11 92584248 92584502 -56198970 - Tigger8 DNA MER2_type -398 268 1 187 284 135 0 chr11 92584641 92584715 -56198757 - MIR SINE MIR -73 189 106 495 218 132 58 chr11 92584814 92584862 -56198610 - MER5A DNA MER1_type 0 189 146 261 0 0 0 chr11 92584862 92584891 -56198581 + (CA)n Simple_repeat Simple_repeat 2 30 0 495 218 132 58 chr11 92584891 92585016 -56198456 - MER5A DNA MER1_type -43 146 3 322 238 0 12 chr11 92585374 92585454 -56198018 + L1ME4a LINE L1 5969 6047 -74 1962 133 27 3 chr11 92585800 92586094 -56197378 - AluSx SINE Alu -11 301 1 2268 119 0 0 chr11 92586504 92586799 -56196673 + AluSx SINE Alu 1 295 -17 270 272 61 18 chr11 92587429 92587543 -56195929 - MLT1L LTR MaLR 0 615 497 598 294 6 24 chr11 92587698 92587868 -56195604 + MER58A DNA MER1_type 9 175 -49 2361 94 0 0 chr11 92588620 92588917 -56194555 + AluSg SINE Alu 1 297 -13 922 154 7 0 chr11 92588917 92589091 -56194381 + AluSg/x SINE Alu 135 309 0 1980 116 35 0 chr11 92589162 92589447 -56194025 - AluSc SINE Alu -14 295 1 217 238 167 12 chr11 92589545 92589629 -56193843 - MIR SINE MIR -6 256 160 490 315 26 68 chr11 92589765 92589882 -56193590 - MLT1L LTR MaLR -172 443 323 1470 107 21 213 chr11 92589882 92590025 -56193447 + AluSq SINE Alu 1 170 -133 2325 100 0 0 chr11 92590025 92590325 -56193147 + AluSc SINE Alu 1 300 -9 1470 107 21 213 chr11 92590325 92590337 -56193135 + AluSq SINE Alu 170 183 -120 1930 90 76 4 chr11 92590337 92590614 -56192858 + AluY SINE Alu 2 298 -13 1470 107 21 213 chr11 92590614 92590626 -56192846 + AluSq SINE Alu 183 196 -107 2053 120 0 13 chr11 92590626 92590927 -56192545 + AluSg SINE Alu 1 297 -13 1470 107 21 213 chr11 92590927 92591132 -56192340 + AluSq SINE Alu 196 303 0 490 315 26 68 chr11 92591132 92591322 -56192150 - MLT1L LTR MaLR -292 323 149 1131 194 82 0 chr11 92591324 92591530 -56191942 + MER58A DNA MER1_type 2 224 0 306 213 165 55 chr11 92591657 92591784 -56191688 - MIR SINE MIR -107 155 15 902 169 0 0 chr11 92592135 92592277 -56191195 - FLAM_C SINE Alu -1 142 1 245 224 15 30 chr11 92592283 92592350 -56191122 + MLT1K LTR MaLR 515 580 -8 277 275 0 14 chr11 92592438 92592507 -56190965 + L2 LINE L2 3205 3272 0 2395 67 0 3 chr11 92592565 92592862 -56190610 + AluY SINE Alu 1 296 -15 761 246 111 41 chr11 92593585 92593829 -56189643 - MIR SINE MIR 0 262 2 372 245 158 118 chr11 92593862 92593938 -56189534 + L1ME4a LINE L1 5534 5606 -515 2093 114 13 25 chr11 92593938 92594113 -56189359 - AluSx SINE Alu 0 312 141 2218 87 3 20 chr11 92594113 92594413 -56189059 - AluSc SINE Alu -13 296 2 2093 114 13 25 chr11 92594413 92594553 -56188919 - AluSx SINE Alu -171 141 1 372 245 158 118 chr11 92594553 92594901 -56188571 + L1ME4a LINE L1 5606 5979 -142 1218 175 18 136 chr11 92595273 92595611 -56187861 + AluJo SINE Alu 1 298 -14 2722 68 63 3 chr11 92596079 92596445 -56187027 - L1PA13 LINE L1 0 6163 5776 2249 95 3 3 chr11 92596458 92596752 -56186720 + AluSq SINE Alu 1 294 -19 26 64 0 0 chr11 92596752 92596799 -56186673 + AT_rich Low_complexity Low_complexity 1 47 0 830 328 97 41 chr11 92596903 92597614 -56185858 - L2 LINE L2 -684 2630 1880 5800 152 21 18 chr11 92597622 92598786 -56184686 + L1MA9 LINE L1 5111 6277 -35 457 191 32 0 chr11 92598836 92598930 -56184542 + L1MA9 LINE L1 6175 6271 -41 716 71 0 0 chr11 92598964 92599048 -56184424 + AluY SINE Alu 3 86 -225 2222 105 3 3 chr11 92599155 92599451 -56184021 + AluSp SINE Alu 1 296 -17 221 291 18 0 chr11 92599460 92599515 -56183957 + L2 LINE L2 3205 3260 -12 311 232 194 47 chr11 92600948 92601288 -56182184 - L1ME4a LINE L1 -3 6118 5729 2404 90 3 13 chr11 92601289 92601600 -56181872 - AluSq SINE Alu -5 308 1 360 359 9 0 chr11 92601696 92601802 -56181670 - MIR SINE MIR -66 142 36 260 275 109 43 chr11 92601961 92602099 -56181373 - L2 LINE L2 -6 3307 3161 412 259 97 90 chr11 92602113 92602402 -56181070 + L2 LINE L2 2978 3268 -4 2171 151 40 3 chr11 92603936 92604261 -56179211 + MER1B DNA MER1_type 1 337 0 2296 81 17 0 chr11 92606029 92606324 -56177148 + AluY SINE Alu 1 300 -11 327 358 0 0 chr11 92606488 92606597 -56176875 - L2 LINE L2 -2 3311 3203 774 284 34 4 chr11 92606749 92606988 -56176484 - MIR SINE MIR -9 253 8 23 0 0 0 chr11 92607491 92607514 -56175958 + AT_rich Low_complexity Low_complexity 1 23 0 1951 136 0 33 chr11 92607638 92607939 -56175533 + AluSx SINE Alu 1 291 -21 195 263 263 22 chr11 92607991 92608128 -56175344 - MIR SINE MIR 0 262 93 2219 110 7 0 chr11 92608129 92608421 -56175051 + AluSx SINE Alu 3 296 -16 417 39 0 0 chr11 92608524 92608575 -56174897 + (CA)n Simple_repeat Simple_repeat 2 52 0 340 308 154 5 chr11 92611191 92611405 -56172067 + MIR SINE MIR 17 262 0 1920 144 41 3 chr11 92611441 92611733 -56171739 - AluSx SINE Alu -5 307 5 2581 71 0 3 chr11 92611835 92612145 -56171327 - AluY SINE Alu -2 309 1 544 149 56 0 chr11 92612175 92612282 -56171190 - L1MA9 LINE L1 -39 6273 6161 2358 148 53 41 chr11 92612292 92612779 -56170693 - L1MA9 LINE L1 -1 6311 5819 2191 99 3 0 chr11 92612879 92613161 -56170311 - AluSx SINE Alu -29 283 1 225 294 89 55 chr11 92614155 92614301 -56169171 + L2 LINE L2 2908 3058 -214 220 345 77 36 chr11 92614375 92614543 -56168929 + L2 LINE L2 3097 3271 -1 210 191 0 0 chr11 92614546 92614593 -56168879 + GA-rich Low_complexity Low_complexity 4 50 0 216 0 0 0 chr11 92617077 92617101 -56166371 + (TA)n Simple_repeat Simple_repeat 2 25 0 4272 56 34 0 chr11 92618604 92619140 -56164332 - MER41A LTR ERV1 0 554 1 1602 146 104 8 chr11 92619608 92619876 -56163596 - AluJb SINE Alu -12 300 7 2373 85 7 0 chr11 92619937 92620231 -56163241 + AluSp SINE Alu 1 296 -17 823 258 0 0 chr11 92620481 92620648 -56162824 + MER45A DNA AcHobo 1 167 -11 518 250 43 24 chr11 92620694 92620858 -56162614 + MIR SINE MIR 20 186 -76 301 349 40 0 chr11 92621134 92621260 -56162212 + L2 LINE L2 3141 3271 -1 358 308 1 0 chr11 92621264 92621380 -56162092 - MIR SINE MIR -60 148 31 230 354 8 16 chr11 92622013 92622140 -56161332 + GA-rich Low_complexity Low_complexity 1 126 0 281 328 37 12 chr11 92622723 92622882 -56160590 + MIR SINE MIR 16 181 -72 188 227 23 0 chr11 92622921 92622965 -56160507 + L2 LINE L2 3215 3259 -54 196 239 75 30 chr11 92624593 92624660 -56158812 + L2 LINE L2 2585 2654 -660 500 193 0 0 chr11 92624699 92624782 -56158690 + AluJ/FLAM SINE Alu 2 84 -228 2156 191 43 31 chr11 92624812 92625351 -56158121 - L1ME2 LINE L1 -59 6105 5561 437 323 45 39 chr11 92625375 92625685 -56157787 + L2 LINE L2 2646 2957 -357 2617 37 3 0 chr11 92625697 92625995 -56157477 - AluY SINE Alu -12 299 1 217 167 0 24 chr11 92626381 92626423 -56157049 + (CATATA)n Simple_repeat Simple_repeat 3 43 0 677 319 73 9 chr11 92626542 92626859 -56156613 - L1MC4a LINE L1 -1879 5929 5593 2007 121 51 0 chr11 92626871 92627144 -56156328 - AluSx SINE Alu -25 287 1 180 0 0 0 chr11 92627248 92627268 -56156204 + (A)n Simple_repeat Simple_repeat 1 20 0 1555 189 14 26 chr11 92627268 92627362 -56156110 + L1MB3 LINE L1 5814 5908 -275 2141 121 0 0 chr11 92627362 92627669 -56155803 + AluSx SINE Alu 1 307 0 1555 189 14 26 chr11 92627669 92627915 -56155557 + L1MB3 LINE L1 5908 6153 -30 32 0 0 0 chr11 92627935 92627967 -56155505 + AT_rich Low_complexity Low_complexity 1 32 0 4373 77 28 9 chr11 92629465 92630097 -56153375 - LTR30 LTR ERV1 0 722 1 4189 107 26 5 chr11 92630097 92630679 -56152793 - HERV30 LTR ERV1 0 8257 7664 * 28370 87 4 3 chr11 92630673 92634279 -56149193 - HERV30 LTR ERV1 -4649 3608 1 4620 113 48 6 chr11 92634279 92634972 -56148500 - LTR30 LTR ERV1 0 722 1 1991 156 7 3 chr11 92635405 92635707 -56147765 - AluSp SINE Alu -10 303 1 16595 80 14 1 chr11 92636093 92639139 -56144333 - L1PA6 LINE L1 -3 6151 3074 230 197 0 45 chr11 92639156 92639222 -56144250 - AluSp/q SINE Alu -1 302 240 17833 119 28 79 chr11 92639340 92642581 -56140891 - L1P LINE L1 -3059 3087 13 1918 169 0 3 chr11 92642617 92642912 -56140560 - AluSc SINE Alu -15 294 1 19269 43 0 1 chr11 92643580 92645803 -56137669 + HERV17 LTR ERV1 3411 5630 -2996 22 0 0 0 chr11 92646075 92646097 -56137375 + GC_rich Low_complexity Low_complexity 1 22 0 214 293 30 20 chr11 92646187 92646286 -56137186 + C-rich Low_complexity Low_complexity 4 103 0 263 182 83 16 chr11 92646511 92646585 -56136887 + MIR SINE MIR 80 154 -54 510 303 37 0 chr11 92647197 92647385 -56136087 + MIR SINE MIR 65 259 -3 375 23 0 0 chr11 92647388 92647432 -56136040 + (TG)n Simple_repeat Simple_repeat 2 45 0 292 235 305 32 chr11 92648538 92648725 -56134747 - MIR SINE MIR 0 262 25 260 331 31 31 chr11 92650333 92650460 -56133012 - L2 LINE L2 -13 3259 3133 285 263 103 45 chr11 92650553 92650709 -56132763 + L2 LINE L2 3149 3313 0 1688 174 17 7 chr11 92650964 92651257 -56132215 - AluJb SINE Alu -16 296 1 1770 82 0 0 chr11 92651346 92651566 -56131906 - AluY SINE Alu -9 302 83 1360 258 98 7 chr11 92651971 92652477 -56130995 + MLT1G LTR MaLR 10 590 0 517 292 26 62 chr11 92652518 92652713 -56130759 + ERVL-F LTR ERVL 5570 5757 -7 1648 243 96 13 chr11 92652717 92653166 -56130306 + MLT2F LTR ERVL 6 491 -172 31648 94 12 8 chr11 92653172 92658871 -56124601 - L1P2 LINE L1 -439 5715 11 777 119 0 0 chr11 92658900 92659018 -56124454 - AluY SINE Alu 0 311 194 595 256 30 6 chr11 92659030 92659194 -56124278 - MIR SINE MIR -86 176 9 1623 128 9 4 chr11 92659476 92659703 -56123769 + AluSg/x SINE Alu 69 296 -14 266 279 29 39 chr11 92659751 92659855 -56123617 - MIR3 SINE MIR -14 194 92 312 269 22 71 chr11 92660352 92660534 -56122938 - MIR3 SINE MIR -11 197 25 6154 131 39 25 chr11 92660817 92661335 -56122137 - L1MA9 LINE L1 -4 6308 5799 213 39 0 0 chr11 92661335 92661361 -56122111 + (TG)n Simple_repeat Simple_repeat 1 26 0 6154 131 39 25 chr11 92661361 92662054 -56121418 - L1MA9 LINE L1 -513 5799 5078 2206 115 20 0 chr11 92662054 92662349 -56121123 + AluSx SINE Alu 1 301 -11 6154 131 39 25 chr11 92662349 92662427 -56121045 - L1MA9 LINE L1 -1234 5078 5003 688 172 7 86 chr11 92662427 92662578 -56120894 - FLAM_C SINE Alu 0 143 5 706 137 17 0 chr11 92662582 92662699 -56120773 - L1MA9 LINE L1 -1131 5015 4897 1075 158 0 0 chr11 92662718 92662899 -56120573 + AluSg/x SINE Alu 126 306 0 2419 216 64 43 chr11 92662902 92662945 -56120527 - L1M1 LINE L1 -4519 2518 2477 2224 110 3 0 chr11 92662945 92663235 -56120237 + AluSg SINE Alu 1 291 -19 2419 216 64 43 chr11 92663235 92664287 -56119185 - L1M1 LINE L1 -4560 2477 1518 215 298 140 9 chr11 92664534 92664648 -56118824 - MIR SINE MIR -50 212 84 249 257 54 0 chr11 92664734 92664808 -56118664 + MIR SINE MIR 75 152 -110 432 230 53 102 chr11 92664812 92665038 -56118434 + MLT1L LTR MaLR 179 393 -222 1753 211 53 80 chr11 92665062 92665589 -56117883 + MLT2B1 LTR ERVL 1 513 -7 466 303 42 0 chr11 92665597 92665762 -56117710 + MLT1L LTR MaLR 432 603 -12 2809 7 0 0 chr11 92665971 92666267 -56117205 + AluY SINE Alu 1 296 -15 180 0 0 0 chr11 92666268 92666288 -56117184 + (T)n Simple_repeat Simple_repeat 1 20 0 570 190 0 0 chr11 92666663 92666763 -56116709 - Charlie4 DNA MER1_type -16 1945 1846 2081 146 7 0 chr11 92666809 92667118 -56116354 + L1PA13 LINE L1 291 601 -6186 2024 127 11 3 chr11 92667160 92667444 -56116028 - AluSg SINE Alu -24 286 1 4864 213 15 0 chr11 92667444 92668437 -56115035 + L1PA13 LINE L1 2485 3492 -3305 2319 104 7 3 chr11 92669077 92669385 -56114087 + AluSg SINE Alu 1 309 -1 2826 167 2 16 chr11 92670465 92671011 -56112461 + L1PA13 LINE L1 3478 4015 -2782 1949 103 52 4 chr11 92671038 92671310 -56112162 - AluSq SINE Alu -15 298 14 29 47 0 0 chr11 92671482 92671525 -56111947 + AT_rich Low_complexity Low_complexity 1 43 0 180 158 0 0 chr11 92671593 92671631 -56111841 + (TA)n Simple_repeat Simple_repeat 1 38 0 333 227 195 24 chr11 92671725 92671955 -56111517 - L1M4 LINE L1 -323 5855 5588 752 151 0 8 chr11 92671955 92672081 -56111391 + FLAM_C SINE Alu 12 136 -7 2153 120 3 10 chr11 92672256 92672564 -56110908 + AluSg SINE Alu 1 306 -4 2102 79 54 7 chr11 92673727 92674004 -56109468 - AluSx SINE Alu -11 301 12 2321 96 0 0 chr11 92674195 92674488 -56108984 + AluY SINE Alu 2 294 -17 341 17 69 0 chr11 92674488 92674546 -56108926 + (TA)n Simple_repeat Simple_repeat 2 63 0 830 201 6 28 chr11 92674705 92674884 -56108588 + MLT1J2 LTR MaLR 1 175 -275 1802 235 63 34 chr11 92674886 92675443 -56108029 + L1ME3 LINE L1 5571 6143 -19 300 301 0 11 chr11 92675603 92675696 -56107776 + MLT1I LTR MaLR 318 409 0 2027 73 0 8 chr11 92676268 92676558 -56106914 - AluY SINE Alu 0 323 36 441 299 17 28 chr11 92676741 92676918 -56106554 + MLT1I-int LTR MaLR 307 481 -890 232 302 47 47 chr11 92677283 92677389 -56106083 + MLT1I-int LTR MaLR 752 857 -514 23 78 0 0 chr11 92677418 92677469 -56106003 + AT_rich Low_complexity Low_complexity 1 51 0 1869 131 33 4 chr11 92677528 92677826 -56105646 + AluSx SINE Alu 1 306 0 1701 158 28 7 chr11 92678742 92679033 -56104439 + AluJo SINE Alu 1 297 -15 2178 119 7 0 chr11 92679203 92679496 -56103976 - AluSx SINE Alu -17 295 1 1183 279 44 38 chr11 92680032 92680286 -56103186 + MLT1J LTR MaLR 1 261 -250 2141 119 20 0 chr11 92680286 92680580 -56102892 - AluSx SINE Alu -12 300 1 1183 279 44 38 chr11 92680580 92680801 -56102671 + MLT1J LTR MaLR 261 479 -32 487 246 59 35 chr11 92680805 92681008 -56102464 + L2 LINE L2 3105 3312 -1 227 294 15 0 chr11 92681243 92681311 -56102161 + L3 LINE CR1 1470 1538 -39 284 241 234 14 chr11 92683307 92683452 -56100020 - MER5A DNA MER1_type -3 186 10 436 157 0 36 chr11 92683581 92683664 -56099808 - AluJ/FRAM SINE Alu -12 300 221 944 101 16 0 chr11 92683958 92684087 -56099385 - AluSq/x SINE Alu -182 131 1 1535 190 103 29 chr11 92684088 92684467 -56099005 - MLT1C LTR MaLR -57 410 4 181 227 0 0 chr11 92686117 92686161 -56097311 - MIR SINE MIR -60 202 159 2154 111 3 3 chr11 92686970 92687292 -56096180 + AluSg SINE Alu 1 310 0 195 42 0 0 chr11 92689453 92689477 -56093995 + (A)n Simple_repeat Simple_repeat 1 24 0 25 0 0 0 chr11 92690034 92690059 -56093413 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr11 92692749 92692773 -56090699 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr11 92692931 92692959 -56090513 + AT_rich Low_complexity Low_complexity 1 28 0 2275 81 0 3 chr11 92693656 92693962 -56089510 - AluSg SINE Alu 0 305 1 262 206 27 14 chr11 92694034 92694107 -56089365 - L1ME4a LINE L1 -80 6041 5968 21 71 0 0 chr11 92695084 92695126 -56088346 + GC_rich Low_complexity Low_complexity 1 42 0 983 188 18 0 chr11 92695393 92695563 -56087909 + AluJb SINE Alu 120 292 -20 2155 122 0 7 chr11 92695595 92695913 -56087559 + AluSp SINE Alu 1 313 0 414 134 0 0 chr11 92695913 92695980 -56087492 + (GGGA)n Simple_repeat Simple_repeat 3 69 0 502 356 33 12 chr11 92695984 92696356 -56087116 - MLT1K LTR MaLR -108 480 77 853 152 0 15 chr11 92696375 92696507 -56086965 + FLAM_C SINE Alu 1 130 -3 356 247 147 29 chr11 92696729 92696899 -56086573 + MIR SINE MIR 2 191 -71 335 345 44 22 chr11 92696994 92697269 -56086203 + L2 LINE L2 1870 2150 -1164 2417 73 0 19 chr11 92697344 92697658 -56085814 - AluSg SINE Alu -2 308 1 297 295 32 11 chr11 92697705 92697800 -56085672 + LTR67 LTR ERVL 107 203 -354 1466 177 13 37 chr11 92697801 92698004 -56085468 - L1MB7 LINE L1 -157 6027 5832 2344 72 21 0 chr11 92698004 92698294 -56085178 - AluSp SINE Alu -17 296 1 1466 177 13 37 chr11 92698294 92698390 -56085082 - L1MB7 LINE L1 -352 5832 5735 291 286 52 58 chr11 92698393 92698547 -56084925 - MIR SINE MIR -103 159 7 2186 117 10 7 chr11 92698602 92698909 -56084563 + AluSx SINE Alu 1 308 -4 356 271 96 30 chr11 92698910 92699076 -56084396 + L1ME4a LINE L1 5729 5905 -216 283 162 14 27 chr11 92699177 92699251 -56084221 + L1ME4a LINE L1 6047 6119 -2 1927 213 80 35 chr11 92700746 92701554 -56081918 - L1M3c LINE L1 -4693 2344 1518 215 298 140 9 chr11 92701801 92701915 -56081557 - MIR SINE MIR -50 212 84 249 257 54 0 chr11 92702001 92702075 -56081397 + MIR SINE MIR 75 152 -110 432 230 53 102 chr11 92702079 92702305 -56081167 + MLT1L LTR MaLR 179 393 -222 1753 211 53 80 chr11 92702329 92702856 -56080616 + MLT2B1 LTR ERVL 1 513 -7 466 303 42 0 chr11 92702864 92703029 -56080443 + MLT1L LTR MaLR 432 603 -12 2930 6 0 0 chr11 92703238 92703549 -56079923 + AluY SINE Alu 1 311 0 203 277 0 48 chr11 92704379 92704462 -56079010 - MER5A DNA MER1_type -72 117 39 478 292 101 11 chr11 92704705 92704883 -56078589 - MER91A DNA MER1_type -1 195 2 210 196 206 31 chr11 92705121 92705218 -56078254 - MIR SINE MIR -30 232 119 1066 186 26 197 chr11 92705807 92705897 -56077575 - LTR16A1 LTR ERVL 0 457 353 1818 57 18 0 chr11 92705897 92706126 -56077346 + L1PA5 LINE L1 5922 6154 0 1066 186 26 197 chr11 92706126 92706579 -56076893 - LTR16A1 LTR ERVL -104 353 7 206 257 109 20 chr11 92707763 92707864 -56075608 + MIR3 SINE MIR 92 201 -7 275 321 30 38 chr11 92708488 92708619 -56074853 + MIR SINE MIR 2 131 -131 2401 92 3 13 chr11 92708811 92709125 -56074347 - AluSq SINE Alu -2 311 1 1717 192 6 31 chr11 92709513 92709830 -56073642 - AluJo SINE Alu -3 309 1 1203 127 73 124 chr11 92709860 92710175 -56073297 - MER46B DNA MER2_type -1 235 62 5558 113 22 1 chr11 92710177 92711046 -56072426 + MER41-int LTR ERV1 4262 5148 -798 1226 167 0 5 chr11 92711047 92711233 -56072239 + AluSp SINE Alu 3 187 -126 1843 123 0 41 chr11 92711370 92711638 -56071834 - AluSx SINE Alu -55 257 1 251 306 0 0 chr11 92711757 92711829 -56071643 - MIR SINE MIR -6 256 185 1933 134 28 0 chr11 92711856 92712147 -56071325 + AluSg SINE Alu 1 299 -11 288 238 0 12 chr11 92712493 92712573 -56070899 - L1ME4a LINE L1 -74 6047 5969 428 218 132 58 chr11 92712931 92713056 -56070416 + MER5A DNA MER1_type 3 146 -43 261 0 0 0 chr11 92713056 92713085 -56070387 + (TG)n Simple_repeat Simple_repeat 2 30 0 428 218 132 58 chr11 92713085 92713133 -56070339 + MER5A DNA MER1_type 146 189 0 2343 92 0 3 chr11 92713443 92713746 -56069726 + AluSc SINE Alu 1 302 -7 823 267 7 4 chr11 92714642 92714912 -56068560 + L1M4 LINE L1 4943 5213 -933 3035 161 15 19 chr11 92715013 92715801 -56067671 + LTR28-int LTR ERV1 3491 6995 -1 2130 124 30 0 chr11 92715803 92716146 -56067326 + LTR28 LTR ERV1 1 903 -675 4001 83 49 48 chr11 92716540 92717192 -56066280 + MER39B LTR ERV1 1 653 0 385 314 64 19 chr11 92717528 92717684 -56065788 - MIR SINE MIR -64 198 36 461 259 116 0 chr11 92717893 92718040 -56065432 + MIR SINE MIR 55 218 -44 325 325 0 0 chr11 92718413 92718493 -56064979 - MIR SINE MIR -148 114 35 2190 107 3 13 chr11 92718493 92718793 -56064679 - AluSq SINE Alu -16 297 1 681 198 0 0 chr11 92719124 92719240 -56064232 + FLAM_A SINE Alu 1 116 -17 2437 74 0 0 chr11 92720258 92720554 -56062918 + AluY SINE Alu 1 296 -15 1555 244 48 39 chr11 92721034 92721580 -56061892 - MER69B DNA AcHobo -305 921 371 2254 108 0 0 chr11 92721580 92721875 -56061597 - AluSx SINE Alu -15 297 3 21 0 0 0 chr11 92722384 92722405 -56061067 + AT_rich Low_complexity Low_complexity 1 21 0 193 236 208 28 chr11 92724049 92724121 -56059351 - L2 LINE L2 -49 3264 3180 212 283 17 0 chr11 92724535 92724595 -56058877 + L2 LINE L2 3251 3311 -2 467 288 35 39 chr11 92724863 92725120 -56058352 - L1MEd LINE L1 -4884 1235 980 1536 175 54 20 chr11 92725122 92725419 -56058053 - AluJb SINE Alu -5 307 1 2204 117 0 10 chr11 92725432 92725740 -56057732 - AluSg SINE Alu -5 305 1 236 304 76 0 chr11 92726056 92726135 -56057337 + MIR SINE MIR 168 252 -10 22 0 0 0 chr11 92726135 92726157 -56057315 + AT_rich Low_complexity Low_complexity 1 22 0 1137 151 57 28 chr11 92726210 92726422 -56057050 + MER20 DNA MER1_type 1 218 -1 2236 116 0 0 chr11 92726996 92727288 -56056184 - AluSg SINE Alu -18 292 1 275 262 0 19 chr11 92727290 92727393 -56056079 - L1M4 LINE L1 -1100 5046 4946 22 0 0 0 chr11 92727401 92727423 -56056049 + GC_rich Low_complexity Low_complexity 1 22 0 2017 127 3 3 chr11 92727443 92727750 -56055722 - AluSg SINE Alu -3 307 1 23 33 0 0 chr11 92727751 92727781 -56055691 + AT_rich Low_complexity Low_complexity 1 30 0 304 228 41 24 chr11 92728023 92728146 -56055326 - L1ME4a LINE L1 -11 6110 5986 316 313 23 16 chr11 92728277 92728405 -56055067 - L1ME4a LINE L1 -400 5721 5593 831 220 99 103 chr11 92728814 92729255 -56054217 - L1P4 LINE L1 -370 5795 5352 3684 155 15 45 chr11 92729276 92729590 -56053882 - L1MD1 LINE L1 -7 6235 5913 2198 109 0 16 chr11 92729590 92729894 -56053578 + AluSx SINE Alu 1 299 -13 3684 155 15 45 chr11 92729894 92730333 -56053139 - L1MD1 LINE L1 -329 5913 5505 2105 139 0 0 chr11 92730460 92730755 -56052717 - AluSx SINE Alu -17 295 1 426 200 0 11 chr11 92730759 92730854 -56052618 + MIR SINE MIR 169 262 0 499 270 122 42 chr11 92731112 92731410 -56052062 - L1MC4 LINE L1 -89 7953 7609 1377 160 11 140 chr11 92731410 92731630 -56051842 - AluJb SINE Alu -1 311 153 2087 80 29 35 chr11 92731630 92731943 -56051529 - AluY SINE Alu 0 311 1 1377 160 11 140 chr11 92731943 92732079 -56051393 - AluJb SINE Alu -159 153 1 499 270 122 42 chr11 92732079 92732206 -56051266 - L1MC4 LINE L1 -433 7609 7494 6540 164 18 11 chr11 92732234 92733391 -56050081 - L1M1 LINE L1 -5657 1908 744 1668 233 53 34 chr11 92733388 92733916 -56049556 - L1MD2 LINE L1 -101 6258 5721 * 336 179 85 9 chr11 92733921 92734027 -56049445 - L1MD2 LINE L1 -1617 4529 4416 4064 174 38 15 chr11 92734066 92735092 -56048380 - L1MB8 LINE L1 0 6178 5178 1982 142 3 28 chr11 92735092 92735410 -56048062 - AluSx SINE Alu -2 310 1 4064 174 38 15 chr11 92735410 92735481 -56047991 - L1MB8 LINE L1 -1000 5178 5110 1941 163 0 6 chr11 92735481 92735794 -56047678 - AluSx SINE Alu -1 311 1 4064 174 38 15 chr11 92735794 92735886 -56047586 - L1MB8 LINE L1 -1068 5110 4960 538 231 68 23 chr11 92735880 92736101 -56047371 - L1MD2 LINE L1 -1758 4388 4158 * 240 247 11 32 chr11 92736106 92736199 -56047273 - L1MD2 LINE L1 -2061 4085 3995 188 23 23 68 chr11 92736319 92736363 -56047109 + (TA)n Simple_repeat Simple_repeat 2 43 0 28 0 0 0 chr11 92737560 92737588 -56045884 + AT_rich Low_complexity Low_complexity 1 28 0 2386 51 7 3 chr11 92737656 92737951 -56045521 + AluY SINE Alu 1 296 -15 2508 71 3 0 chr11 92738147 92738456 -56045016 + AluY SINE Alu 1 310 -1 384 326 56 23 chr11 92738596 92738811 -56044661 - L2 LINE L2 -823 2491 2270 1638 186 10 10 chr11 92739031 92739327 -56044145 + AluJo SINE Alu 1 296 -16 2011 85 37 11 chr11 92739512 92739803 -56043669 + AluSg SINE Alu 9 310 0 415 259 112 21 chr11 92740052 92740195 -56043277 - MIR SINE MIR -1 261 106 38 68 0 0 chr11 92740887 92740960 -56042512 + AT_rich Low_complexity Low_complexity 1 73 0 1643 166 16 32 chr11 92741053 92741366 -56042106 + AluJb SINE Alu 1 308 -4 2169 114 0 7 chr11 92741529 92741826 -56041646 - AluSg SINE Alu -15 295 1 22 0 0 0 chr11 92741848 92741870 -56041602 + AT_rich Low_complexity Low_complexity 1 22 0 2073 108 4 0 chr11 92742174 92742478 -56040994 - AluSc SINE Alu 0 305 1 304 280 13 0 chr11 92742679 92742754 -56040718 + MIR SINE MIR 3 78 -184 1007 73 0 0 chr11 92742809 92742933 -56040539 - AluSg/x SINE Alu -8 304 181 2011 146 7 3 chr11 92743081 92743390 -56040082 - AluSg SINE Alu 0 310 1 4479 213 15 0 chr11 92744030 92745023 -56038449 - L1PA13 LINE L1 -3305 3492 2485 2016 127 11 3 chr11 92745023 92745307 -56038165 + AluSg SINE Alu 1 286 -24 1936 146 7 0 chr11 92745349 92745658 -56037814 - L1PA13 LINE L1 -6186 601 291 530 190 0 0 chr11 92745704 92745804 -56037668 + Charlie4 DNA MER1_type 1846 1945 -16 192 40 0 0 chr11 92746174 92746199 -56037273 + (TA)n Simple_repeat Simple_repeat 2 26 0 2719 14 0 0 chr11 92746199 92746496 -56036976 - AluYa5 SINE Alu -14 297 1 372 329 13 67 chr11 92746590 92746739 -56036733 - MIR SINE MIR -66 142 3 265 275 109 43 chr11 92746857 92746995 -56036477 - L2 LINE L2 -6 3307 3161 420 259 97 90 chr11 92747009 92747298 -56036174 + L2 LINE L2 2978 3268 -4 410 202 0 0 chr11 92748725 92748824 -56034648 - L1MDa LINE L1 -2172 4368 4270 2395 93 0 0 chr11 92748824 92749134 -56034338 - AluSg SINE Alu 0 310 1 614 174 164 51 chr11 92749229 92749424 -56034048 - MER20 DNA MER1_type -2 217 1 858 243 92 57 chr11 92749425 92749669 -56033803 - L1MDa LINE L1 -3540 3000 2766 2218 115 3 6 chr11 92749669 92749982 -56033490 - AluSx SINE Alu 0 312 1 858 243 92 57 chr11 92749982 92750439 -56033033 - L1MDa LINE L1 -3774 2766 2264 292 354 76 10 chr11 92751513 92751711 -56031761 - L2 LINE L2 -994 2320 2110 217 351 69 8 chr11 92752797 92752928 -56030544 - L3b LINE CR1 -81 1502 1364 1586 189 42 0 chr11 92753308 92753593 -56029879 - AluJo SINE Alu -15 297 1 1768 170 10 3 chr11 92754567 92754873 -56028599 + AluSx SINE Alu 1 308 -4 256 367 35 33 chr11 92754917 92755087 -56028385 + MIR SINE MIR 20 189 -73 493 240 24 94 chr11 92755345 92755599 -56027873 - LTR27 LTR ERV1 0 636 401 1286 113 0 0 chr11 92755705 92755873 -56027599 + AluSg/x SINE Alu 128 295 -15 27 0 0 0 chr11 92755873 92755900 -56027572 + AT_rich Low_complexity Low_complexity 1 27 0 2088 83 0 4 chr11 92755909 92756174 -56027298 + AluY SINE Alu 16 279 -32 198 0 0 0 chr11 92756175 92756197 -56027275 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 1618 142 0 4 chr11 92756226 92756459 -56027013 + AluSx SINE Alu 44 275 -37 207 0 0 0 chr11 92756467 92756490 -56026982 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1577 221 40 47 chr11 92756536 92756984 -56026488 + MLT2B1 LTR ERVL 5 449 -71 333 0 0 0 chr11 92756989 92757026 -56026446 + (CA)n Simple_repeat Simple_repeat 2 38 0 198 324 38 38 chr11 92757194 92757299 -56026173 - MIR SINE MIR -46 216 112 326 115 0 0 chr11 92758414 92758466 -56025006 + AluSp SINE Alu 1 52 -250 3078 136 89 12 chr11 92758466 92758980 -56024492 + MER41C LTR ERV1 1 554 0 1845 109 4 0 chr11 92758980 92759228 -56024244 + AluSp SINE Alu 49 297 -16 196 238 133 38 chr11 92759641 92759746 -56023726 + L2 LINE L2 3025 3139 -174 2234 107 7 0 chr11 92760361 92760669 -56022803 - AluSx SINE Alu -2 310 1 18593 22 0 1 chr11 92761627 92764470 -56019002 - L1PA2 LINE L1 -135 6020 3180 2177 88 10 0 chr11 92765457 92765751 -56017721 - AluY SINE Alu -14 297 1 2436 63 0 3 chr11 92765833 92766134 -56017338 - AluY SINE Alu -11 300 1 251 294 44 103 chr11 92766681 92766817 -56016655 - L2 LINE L2 -4 3268 3141 1619 124 100 0 chr11 92766928 92767223 -56016249 + AluSx SINE Alu 1 321 0 324 369 47 4 chr11 92767315 92767548 -56015924 - L2 LINE L2 -920 2394 2152 595 203 51 0 chr11 92767677 92767795 -56015677 + MIR SINE MIR 41 164 -98 500 307 62 28 chr11 92767798 92767977 -56015495 + L2 LINE L2 2694 2878 -436 23267 43 45 2 chr11 92768106 92771046 -56012426 + L1P LINE L1 3 3066 -3080 523 244 72 31 chr11 92771202 92771395 -56012077 + L2 LINE L2 3109 3309 -4 852 98 45 0 chr11 92771417 92771550 -56011922 + MER85 DNA T2_type 1 139 0 2332 73 0 0 chr11 92771996 92772284 -56011188 - AluY SINE Alu -23 288 1 1149 130 148 22 chr11 92772614 92772844 -56010628 - L1MD1 LINE L1 -5 6237 5979 730 150 57 83 chr11 92772842 92772979 -56010493 - L1MD1 LINE L1 -504 5738 5606 * 2254 94 7 0 chr11 92772979 92773267 -56010205 - AluSg SINE Alu -13 297 8 730 150 57 83 chr11 92773267 92773322 -56010150 - L1MD1 LINE L1 -636 5606 5551 1931 99 8 0 chr11 92773910 92774163 -56009309 + AluSx SINE Alu 38 292 -20 2250 101 7 0 chr11 92774991 92775297 -56008175 + AluSp SINE Alu 6 313 0 2144 173 11 24 chr11 92775333 92775708 -56007764 - MER21B LTR ERV1 -89 774 405 767 224 11 22 chr11 92775709 92775892 -56007580 + L1ME1 LINE L1 5480 5660 -506 1751 129 60 85 chr11 92775910 92775969 -56007503 - L1MA7 LINE L1 -2 6289 6230 591 112 0 0 chr11 92775969 92776058 -56007414 + (TA)n Simple_repeat Simple_repeat 2 90 0 1751 129 60 85 chr11 92776058 92776966 -56006506 - L1MA7 LINE L1 -61 6230 5199 1320 144 20 0 chr11 92776967 92777168 -56006304 - AluJb SINE Alu -21 291 87 7230 166 32 13 chr11 92777169 92778501 -56004971 - L1MA7 LINE L1 -929 5217 3856 1647 138 101 41 chr11 92778501 92778819 -56004653 + MER1B DNA MER1_type 1 337 0 7230 166 32 13 chr11 92778819 92778901 -56004571 - L1MA7 LINE L1 -2290 3856 3777 2156 120 72 97 chr11 92778924 92779398 -56004074 - L1MA4A LINE L1 -11 6292 5831 2253 113 0 0 chr11 92779401 92779703 -56003769 - AluSx SINE Alu -10 302 1 2121 176 30 19 chr11 92779720 92780037 -56003435 - L1MA7 LINE L1 -2357 3789 3464 1866 145 99 65 chr11 92780037 92780451 -56003021 - MSTA LTR MaLR 0 428 1 2121 176 30 19 chr11 92780451 92780600 -56002872 - L1MA7 LINE L1 -2682 3464 3318 * 7116 55 3 0 chr11 92780569 92781720 -56001752 - L1PA5 LINE L1 -5 6149 4996 1245 183 64 3 chr11 92781745 92782056 -56001416 - L1MA7 LINE L1 -2884 3262 2933 701 254 33 0 chr11 92782083 92782296 -56001176 + L1ME1 LINE L1 5676 5895 -271 366 264 46 51 chr11 92782307 92782504 -56000968 + L1MA10 LINE L1 5945 6299 -26 1701 146 14 50 chr11 92782505 92782868 -56000604 - Tigger7 DNA MER2_type -1 2486 2137 639 217 0 0 chr11 92782865 92782980 -56000492 - Tigger7 DNA MER2_type -2371 116 2 * 239 317 0 17 chr11 92783556 92783616 -55999856 + MIR SINE MIR 6 64 -198 850 171 57 13 chr11 92783619 92783777 -55999695 + AluJb SINE Alu 137 301 -11 215 287 180 33 chr11 92783777 92783899 -55999573 + MIR SINE MIR 54 193 -69 249 33 0 0 chr11 92784061 92784091 -55999381 + (TG)n Simple_repeat Simple_repeat 1 30 0 2555 63 0 13 chr11 92784668 92784983 -55998489 + AluY SINE Alu 1 311 0 230 344 73 47 chr11 92785084 92785276 -55998196 - MIR SINE MIR -60 202 6 210 182 0 23 chr11 92786595 92786639 -55996833 + A-rich Low_complexity Low_complexity 3 45 0 21 36 0 0 chr11 92786744 92786772 -55996700 + AT_rich Low_complexity Low_complexity 1 28 0 372 268 108 57 chr11 92787073 92787267 -55996205 + MIR SINE MIR 59 262 0 798 288 100 15 chr11 92787313 92787653 -55995819 + HAL1 LINE L1 1538 1906 -601 24 32 0 0 chr11 92789261 92789292 -55994180 + AT_rich Low_complexity Low_complexity 1 31 0 294 73 0 0 chr11 92789926 92789967 -55993505 + (CA)n Simple_repeat Simple_repeat 2 42 0 14029 126 35 27 chr11 92789975 92790131 -55993341 - Tigger1 DNA MER2_type -1 2417 2264 2198 122 0 0 chr11 92790131 92790426 -55993046 - AluSg SINE Alu -15 295 1 14029 126 35 27 chr11 92790426 92791755 -55991717 - Tigger1 DNA MER2_type -154 2264 947 2042 119 20 3 chr11 92791755 92792048 -55991424 - AluSg SINE Alu -12 298 1 14029 126 35 27 chr11 92792048 92792727 -55990745 - Tigger1 DNA MER2_type -1471 947 229 1810 164 13 0 chr11 92792727 92793026 -55990446 + AluSx SINE Alu 1 303 -9 14029 126 35 27 chr11 92793026 92793228 -55990244 - Tigger1 DNA MER2_type -2189 229 30 1605 163 51 27 chr11 92793416 92793710 -55989762 - AluJo SINE Alu -2 310 10 2068 100 14 4 chr11 92793780 92794060 -55989412 - AluSc SINE Alu -3 306 24 213 347 67 0 chr11 92794216 92794291 -55989181 - L2 LINE L2 0 3272 3193 346 236 158 0 chr11 92794573 92794700 -55988772 - L2 LINE L2 0 3313 3167 2249 115 3 0 chr11 92794957 92795262 -55988210 - AluSx SINE Alu -6 306 1 23 54 0 0 chr11 92795661 92795698 -55987774 + AT_rich Low_complexity Low_complexity 1 37 0 2353 104 0 0 chr11 92795770 92796079 -55987393 - AluSx SINE Alu -3 309 1 1298 233 30 24 chr11 92796219 92796463 -55987009 - MER58B DNA MER1_type -2079 341 93 1673 209 47 43 chr11 92796463 92796928 -55986544 - MLT1C LTR MaLR 0 467 1 1298 233 30 24 chr11 92796928 92797022 -55986450 - MER58B DNA MER1_type -2327 93 1 386 301 75 40 chr11 92797092 92797291 -55986181 - MIR SINE MIR -6 256 51 313 301 11 0 chr11 92798078 92798171 -55985301 + CT-rich Low_complexity Low_complexity 3 96 0 598 303 119 47 chr11 92798531 92799127 -55984345 - L2 LINE L2 -73 3240 2616 642 146 0 0 chr11 92799395 92799491 -55983981 - AluS SINE Alu -216 96 1 24 0 0 0 chr11 92799547 92799571 -55983901 + AT_rich Low_complexity Low_complexity 1 24 0 21 100 0 0 chr11 92799678 92799748 -55983724 + AT_rich Low_complexity Low_complexity 1 70 0 23 0 0 0 chr11 92799910 92799933 -55983539 + AT_rich Low_complexity Low_complexity 1 23 0 200 200 0 60 chr11 92801826 92801876 -55981596 + L2 LINE L2 3224 3270 -2 580 286 66 11 chr11 92801948 92802225 -55981247 + L1ME LINE L1 5511 5804 -366 2227 110 0 0 chr11 92802531 92802822 -55980650 - AluSx SINE Alu -21 291 1 2017 147 0 0 chr11 92802824 92803123 -55980349 - AluSx SINE Alu -13 299 1 24 0 0 0 chr11 92803397 92803421 -55980051 + AT_rich Low_complexity Low_complexity 1 24 0 746 168 7 7 chr11 92803946 92804083 -55979389 - AluJo SINE Alu -175 137 1 189 0 0 0 chr11 92804299 92804320 -55979152 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 1617 140 61 7 chr11 92804338 92804631 -55978841 - L1MC2 LINE L1 -14 6330 6022 262 79 0 0 chr11 92804637 92804675 -55978797 - L1MC2 LINE L1 -378 5966 5929 316 311 82 0 chr11 92804681 92804816 -55978656 + L2 LINE L2 3168 3313 0 505 244 62 44 chr11 92804872 92805032 -55978440 + MIR SINE MIR 9 171 -91 3097 121 14 44 chr11 92805045 92805540 -55977932 + MER1A DNA MER1_type 30 509 -20 295 210 50 60 chr11 92805545 92805645 -55977827 + MIR SINE MIR 164 262 0 589 238 79 57 chr11 92805964 92806003 -55977469 - L1ME1 LINE L1 -5 6161 6124 2566 200 25 25 chr11 92806003 92806553 -55976919 - MER44D DNA MER2_type 0 605 1 589 238 79 57 chr11 92806553 92806778 -55976694 - L1ME1 LINE L1 -42 6124 5891 1465 243 84 24 chr11 92806818 92807320 -55976152 - L1ME1 LINE L1 -5 6161 5630 2263 146 8 8 chr11 92807325 92807695 -55975777 - MLT1B LTR MaLR 0 390 21 1492 209 3 14 chr11 92807769 92808065 -55975407 - AluJo SINE Alu -19 293 1 3497 234 42 28 chr11 92808065 92809490 -55973982 - L1ME1 LINE L1 -559 5607 4166 1885 243 67 24 chr11 92809512 92810182 -55973290 - L1ME1 LINE L1 -2201 3945 3247 1171 255 20 8 chr11 92810178 92810531 -55972941 - L1ME1 LINE L1 -3412 2734 2378 * 244 171 0 0 chr11 92810561 92810602 -55972870 - MLT1L LTR MaLR -425 190 150 2429 91 0 0 chr11 92811369 92811678 -55971794 - AluSx SINE Alu -3 309 1 888 272 13 0 chr11 92812589 92812821 -55970651 - L1ME1 LINE L1 -19 6081 5847 * 1688 183 26 0 chr11 92812817 92813128 -55970344 - L1ME1 LINE L1 -494 5606 5288 486 167 26 133 chr11 92813182 92813344 -55970128 - L1ME1 LINE L1 -780 5300 5175 2255 116 0 0 chr11 92813344 92813654 -55969818 - AluY SINE Alu -1 310 1 486 167 26 133 chr11 92813654 92813755 -55969717 - L1ME1 LINE L1 -905 5175 5065 422 204 129 30 chr11 92813797 92813929 -55969543 - MLT1G1 LTR MaLR -446 149 5 2670 257 69 11 chr11 92813937 92814989 -55968483 - L1ME1 LINE L1 -1013 5067 3955 52 30 0 0 chr11 92815068 92815134 -55968338 + AT_rich Low_complexity Low_complexity 1 66 0 534 231 99 18 chr11 92815694 92815966 -55967506 - L1ME1 LINE L1 -4571 1509 1173 283 258 18 18 chr11 92815972 92816135 -55967337 + CT-rich Low_complexity Low_complexity 3 165 0 727 247 49 92 chr11 92816147 92816759 -55966713 - L1ME1 LINE L1 -4927 1051 466 306 327 0 28 chr11 92816962 92817069 -55966403 - L1ME1 LINE L1 -5639 431 328 312 227 146 18 chr11 92817235 92817345 -55966127 - L1ME1 LINE L1 -5934 136 13 1092 198 20 5 chr11 92817586 92817788 -55965684 - MER58A DNA MER1_type 0 224 20 300 70 0 0 chr11 92817986 92818029 -55965443 + (TG)n Simple_repeat Simple_repeat 2 44 0 22 35 0 0 chr11 92818049 92818078 -55965394 + AT_rich Low_complexity Low_complexity 1 29 0 5326 154 32 16 chr11 92818109 92819527 -55963945 - L1MA7 LINE L1 0 6291 4848 518 221 115 0 chr11 92819528 92819641 -55963831 + FLAM_A SINE Alu 1 126 -7 404 228 210 43 chr11 92819660 92819822 -55963650 - AluJo SINE Alu -121 191 3 287 303 28 48 chr11 92819995 92820140 -55963332 - MIR SINE MIR -47 215 74 2030 113 7 3 chr11 92820331 92820624 -55962848 + AluSx SINE Alu 16 309 -3 698 197 0 8 chr11 92820649 92820776 -55962696 - FLAM_A SINE Alu -7 126 1 2110 128 0 0 chr11 92821052 92821333 -55962139 - AluSg SINE Alu -23 287 7 303 28 0 0 chr11 92822316 92822352 -55961120 + (TG)n Simple_repeat Simple_repeat 1 36 0 267 316 0 0 chr11 92822686 92822765 -55960707 + GA-rich Low_complexity Low_complexity 3 81 0 2114 121 10 3 chr11 92823218 92823524 -55959948 + AluSq SINE Alu 1 308 -5 854 242 137 35 chr11 92823602 92824090 -55959382 - HAL1 LINE L1 -114 2393 1856 1082 281 204 58 chr11 92824185 92825620 -55957852 - HAL1 LINE L1 -840 1667 25 185 360 87 42 chr11 92825661 92825741 -55957731 + L2 LINE L2 1986 2061 -1253 1834 108 61 4 chr11 92825741 92826018 -55957454 - AluSp SINE Alu -20 293 1 185 360 87 42 chr11 92826018 92826226 -55957246 + L2 LINE L2 2061 2287 -1027 310 283 85 9 chr11 92826554 92826660 -55956812 + L2 LINE L2 2872 2985 -328 501 299 60 54 chr11 92826754 92827068 -55956404 + L2 LINE L2 2979 3294 -19 5066 175 18 1 chr11 92827239 92828262 -55955210 - L1MB3 LINE L1 0 6183 5144 3535 224 30 14 chr11 92828259 92828434 -55955038 - L1M4 LINE L1 -830 5316 5145 * 2093 114 0 0 chr11 92828434 92828743 -55954729 - AluSq SINE Alu 0 311 3 3535 224 30 14 chr11 92828743 92828945 -55954527 - L1M4 LINE L1 -1001 5145 4948 2707 180 88 21 chr11 92828945 92829528 -55953944 - LTR26E LTR ERV1 0 622 1 3535 224 30 14 chr11 92829528 92830175 -55953297 - L1M4 LINE L1 -1198 4948 4273 811 136 121 0 chr11 92830504 92830644 -55952828 - FRAM SINE Alu 0 176 20 222 118 0 0 chr11 92831245 92831279 -55952193 + (GGGAGA)n Simple_repeat Simple_repeat 3 36 0 735 186 0 0 chr11 92831545 92831669 -55951803 - FLAM_C SINE Alu -19 124 1 21 0 0 0 chr11 92831868 92831889 -55951583 + AT_rich Low_complexity Low_complexity 1 21 0 2388 73 0 7 chr11 92831908 92832208 -55951264 - AluY SINE Alu -13 298 1 350 258 0 34 chr11 92832688 92832777 -55950695 + HsTC2 DNA Tc2 18 103 -1795 387 60 0 0 chr11 92833027 92833077 -55950395 + (CA)n Simple_repeat Simple_repeat 2 51 0 180 167 167 0 chr11 92833810 92833852 -55949620 - L2 LINE L2 -568 2746 2698 483 234 121 8 chr11 92833891 92834015 -55949457 - MIR SINE MIR -120 142 5 2002 131 0 3 chr11 92834370 92834660 -55948812 - AluSc SINE Alu -20 289 1 26 0 0 0 chr11 92834889 92834915 -55948557 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr11 92835200 92835222 -55948250 + AT_rich Low_complexity Low_complexity 1 22 0 386 322 8 8 chr11 92835338 92835456 -55948016 - L2 LINE L2 -5 3308 3191 6437 49 2 0 chr11 92835688 92836485 -55946987 - L1PA7 LINE L1 -4 6150 5352 43760 40 1 1 chr11 92836502 92842650 -55940822 - L1PA2 LINE L1 -3 6152 9 22 0 0 0 chr11 92842665 92842687 -55940785 + AT_rich Low_complexity Low_complexity 1 22 0 3181 107 2 4 chr11 92842691 92843160 -55940312 - L1M1 LINE L1 -492 5813 5346 7672 156 44 112 chr11 92843169 92845345 -55938127 - L1M1 LINE L1 -1398 4748 2721 219 315 73 36 chr11 92845465 92845630 -55937842 - L2 LINE L2 -594 2720 2550 488 318 63 28 chr11 92845732 92846018 -55937454 - L2 LINE L2 -960 2354 2059 366 289 42 16 chr11 92846039 92846180 -55937292 + MIR SINE MIR 45 189 -65 273 254 207 24 chr11 92846186 92846260 -55937212 + MER112 DNA MER1_type 1 60 -200 180 111 0 0 chr11 92846260 92846287 -55937185 + (TA)n Simple_repeat Simple_repeat 2 28 0 273 254 207 24 chr11 92846287 92846381 -55937091 + MER112 DNA MER1_type 60 200 -60 2209 105 7 0 chr11 92847140 92847436 -55936036 + AluSp SINE Alu 1 298 -15 297 0 0 0 chr11 92847448 92847481 -55935991 + (TG)n Simple_repeat Simple_repeat 2 34 0 612 0 0 0 chr11 92848282 92848350 -55935122 + (TA)n Simple_repeat Simple_repeat 2 69 0 752 95 19 0 chr11 92848777 92848882 -55934590 - AluSq/x SINE Alu -189 123 17 425 280 0 56 chr11 92848910 92849035 -55934437 + L2 LINE L2 3195 3312 -1 460 250 9 19 chr11 92849052 92849160 -55934312 + MIR SINE MIR 21 127 -135 284 318 49 7 chr11 92849225 92849371 -55934101 - MIR SINE MIR -50 158 9 247 282 183 35 chr11 92849490 92849632 -55933840 + MER5B DNA MER1_type 16 178 0 254 343 58 22 chr11 92849648 92849785 -55933687 - MIR SINE MIR -75 187 46 2171 95 7 17 chr11 92849845 92850141 -55933331 + AluSc SINE Alu 3 295 -14 252 232 73 37 chr11 92850426 92850508 -55932964 - MIR SINE MIR -175 87 3 353 311 7 34 chr11 92853114 92853262 -55930210 + MIR SINE MIR 30 173 -89 2278 217 50 2 chr11 92853759 92854215 -55929257 - MLT2B2 LTR ERVL -37 478 1 923 205 70 29 chr11 92854396 92854640 -55928832 + L1MC5 LINE L1 5331 5584 -2224 583 240 69 39 chr11 92854688 92854892 -55928580 + L1MC5 LINE L1 5727 5936 -1872 3216 199 22 9 chr11 92854930 92855569 -55927903 + MER82 DNA MER2_type 7 653 0 25 31 0 0 chr11 92855606 92855638 -55927834 + AT_rich Low_complexity Low_complexity 1 32 0 14243 142 24 10 chr11 92855668 92858053 -55925419 - Tigger1 DNA MER2_type -1 2417 1 21 36 0 0 chr11 92858154 92858182 -55925290 + AT_rich Low_complexity Low_complexity 1 28 0 985 248 24 70 chr11 92858253 92858584 -55924888 + L1MC5 LINE L1 6615 6930 -1031 1846 97 138 0 chr11 92858585 92858853 -55924619 + AluSg SINE Alu 1 305 -5 671 281 52 25 chr11 92858869 92859266 -55924206 - L2 LINE L2 -189 3124 2722 1051 153 10 25 chr11 92859267 92859469 -55924003 + L1MB1 LINE L1 5858 6056 -112 408 140 0 0 chr11 92859571 92859628 -55923844 - AluS SINE Alu -239 64 8 941 296 72 43 chr11 92859746 92860357 -55923115 + L1MC4a LINE L1 5254 5882 -1926 651 231 0 8 chr11 92861108 92861238 -55922234 - FLAM_A SINE Alu -4 129 1 533 220 121 16 chr11 92861620 92861802 -55921670 + L1MC4 LINE L1 7402 7602 -440 504 306 65 54 chr11 92862184 92862478 -55920994 - L2 LINE L2 -6 3266 2970 1476 155 129 4 chr11 92862596 92862874 -55920598 + MER67A LTR ERV1 1 313 -230 789 214 45 31 chr11 92863133 92863357 -55920115 + MER67A LTR ERV1 317 543 0 236 259 0 0 chr11 92863727 92863785 -55919687 + MLT1J2 LTR MaLR 258 315 -135 320 371 33 0 chr11 92863812 92863963 -55919509 + L2 LINE L2 3111 3266 -6 525 261 25 19 chr11 92864177 92864334 -55919138 - MLT1J2 LTR MaLR -244 206 49 272 374 43 12 chr11 92864451 92864705 -55918767 - L2 LINE L2 -443 2871 2610 383 234 78 21 chr11 92865237 92865378 -55918094 - L2 LINE L2 -614 2700 2552 531 291 81 47 chr11 92866342 92866485 -55916987 + MIR SINE MIR 2 158 -104 2510 130 48 7 chr11 92866485 92866900 -55916572 - MSTB1 LTR MaLR 0 432 1 531 291 81 47 chr11 92866900 92866990 -55916482 + MIR SINE MIR 158 243 -19 825 238 122 30 chr11 92867317 92867687 -55915785 - LTR52 LTR ERVL -17 404 1 264 252 54 27 chr11 92867983 92868094 -55915378 - L2 LINE L2 -1 3271 3158 329 298 153 43 chr11 92868179 92868434 -55915038 - L2 LINE L2 -731 2583 2301 180 328 66 41 chr11 92869191 92869313 -55914159 + MIR SINE MIR 26 150 -112 312 243 131 9 chr11 92869675 92869782 -55913690 + MIR SINE MIR 25 144 -118 1335 169 86 27 chr11 92869790 92870162 -55913310 - MER69 DNA AcHobo -3 2523 2130 180 0 0 0 chr11 92870191 92870211 -55913261 + (T)n Simple_repeat Simple_repeat 1 20 0 205 209 0 0 chr11 92870900 92870943 -55912529 + MIR SINE MIR 90 132 -130 2156 134 0 0 chr11 92871152 92871457 -55912015 - AluSx SINE Alu -6 306 2 229 270 54 14 chr11 92871502 92871576 -55911896 - L2 LINE L2 -15 3298 3222 235 324 167 0 chr11 92871686 92871794 -55911678 + MER5B DNA MER1_type 3 128 -50 420 305 118 88 chr11 92872016 92872321 -55911151 + L2 LINE L2 2957 3270 -2 233 314 78 0 chr11 92872304 92872406 -55911066 - L2 LINE L2 -278 2994 2885 * 196 307 145 86 chr11 92872456 92872746 -55910726 - L2 LINE L2 -1 3271 2965 314 185 22 109 chr11 92872783 92872875 -55910597 - L3 LINE CR1 -111 1466 1383 245 324 58 22 chr11 92872963 92873102 -55910370 + L2 LINE L2 3122 3265 -7 327 281 50 36 chr11 92873580 92873719 -55909753 + MIR3 SINE MIR 11 151 -57 192 164 0 149 chr11 92873735 92873802 -55909670 - L2 LINE L2 -544 2770 2714 207 0 0 0 chr11 92873836 92873859 -55909613 + (T)n Simple_repeat Simple_repeat 1 23 0 328 231 67 52 chr11 92873973 92874021 -55909451 + L1MC5 LINE L1 6924 6970 -991 288 0 0 0 chr11 92874021 92874053 -55909419 + (CA)n Simple_repeat Simple_repeat 1 32 0 328 231 67 52 chr11 92874053 92874138 -55909334 + L1MC5 LINE L1 6970 7059 -902 1193 148 10 0 chr11 92874139 92874342 -55909130 - L1PA16 LINE L1 -4 6162 5958 5343 263 19 22 chr11 92874346 92876297 -55907175 - L1P LINE L1 -2337 3809 1866 459 76 0 15 chr11 92876302 92876368 -55907104 - L1PA6 LINE L1 -14 6140 6076 349 299 27 14 chr11 92876468 92876615 -55906857 - L1MC5 LINE L1 -1187 6774 6626 759 287 36 28 chr11 92877070 92877321 -55906151 - MIR SINE MIR -3 259 7 2090 132 3 0 chr11 92877975 92878263 -55905209 - AluSx SINE Alu -23 289 1 2188 131 0 0 chr11 92878349 92878654 -55904818 - AluSq SINE Alu -8 305 1 237 300 210 30 chr11 92878800 92879033 -55904439 + L2 LINE L2 2696 2970 -344 1934 110 38 28 chr11 92879205 92879495 -55903977 - AluSx SINE Alu -8 304 12 1218 206 44 61 chr11 92879522 92879969 -55903503 - L1ME1 LINE L1 -9 6157 5724 313 208 91 0 chr11 92880324 92880401 -55903071 - MIR SINE MIR -84 178 95 218 268 18 0 chr11 92881123 92881179 -55902293 + L2 LINE L2 2676 2732 -582 209 363 194 0 chr11 92881504 92881628 -55901844 + L2 LINE L2 3117 3264 -8 350 133 80 27 chr11 92882146 92882221 -55901251 - L2 LINE L2 -5 3308 3230 775 325 48 10 chr11 92882505 92882819 -55900653 + MLT1I LTR MaLR 67 392 -17 599 178 0 78 chr11 92882820 92882949 -55900523 - MER5A DNA MER1_type 0 189 71 428 205 36 123 chr11 92882953 92883090 -55900382 - Charlie2 DNA MER1_type -2646 216 99 2335 84 0 16 chr11 92883090 92883398 -55900074 - AluSq SINE Alu -10 303 1 428 205 36 123 chr11 92883398 92883455 -55900017 - Charlie2 DNA MER1_type -2763 99 39 192 238 0 0 chr11 92883615 92883657 -55899815 + MIR SINE MIR 100 141 -121 2292 104 16 0 chr11 92883888 92884195 -55899277 + AluSq SINE Alu 1 312 -1 2219 102 0 7 chr11 92884409 92884713 -55898759 + AluSg1 SINE Alu 1 302 -7 4111 98 112 184 chr11 92886141 92887448 -55896024 - pTR5 LTR ERV1 0 2438 1226 2282 84 0 0 chr11 92888319 92888603 -55894869 + AluSc SINE Alu 1 284 -25 198 0 0 0 chr11 92888621 92888643 -55894829 + (TATG)n Simple_repeat Simple_repeat 2 23 0 715 184 0 0 chr11 92889771 92889880 -55893592 + FLAM_A SINE Alu 6 114 -28 654 132 62 8 chr11 92890096 92890225 -55893247 - L1MA5A LINE L1 -10 6287 6152 395 303 118 45 chr11 92890672 92891094 -55892378 - HAL1 LINE L1 -2030 477 25 1839 108 61 4 chr11 92891215 92891492 -55891980 - AluSp SINE Alu -20 293 1 315 283 85 9 chr11 92892028 92892134 -55891338 + L2 LINE L2 2872 2985 -328 489 299 60 54 chr11 92892228 92892542 -55890930 + L2 LINE L2 2979 3294 -19 4776 174 19 1 chr11 92892713 92893735 -55889737 - L1MB3 LINE L1 0 6183 5144 3303 229 26 11 chr11 92893732 92893907 -55889565 - L1 LINE L1 -830 5316 5145 * 2089 114 0 0 chr11 92893907 92894220 -55889252 - AluSq SINE Alu 0 315 3 3303 229 26 11 chr11 92894220 92894422 -55889050 - L1 LINE L1 -1001 5145 4947 2673 185 86 19 chr11 92894422 92895005 -55888467 - LTR26E LTR ERV1 0 622 1 3303 229 26 11 chr11 92895005 92895595 -55887877 - L1 LINE L1 -1199 4947 4333 760 176 115 0 chr11 92895981 92896129 -55887343 - FRAM SINE Alu -1 175 11 222 118 0 0 chr11 92896722 92896756 -55886716 + (GGGAGA)n Simple_repeat Simple_repeat 3 36 0 742 186 0 0 chr11 92897022 92897146 -55886326 - FLAM_C SINE Alu -19 124 1 21 0 0 0 chr11 92897345 92897366 -55886106 + AT_rich Low_complexity Low_complexity 1 21 0 2367 77 0 7 chr11 92897385 92897684 -55885788 - AluY SINE Alu -14 297 1 293 226 0 38 chr11 92898164 92898253 -55885219 + MER104 DNA Tc2 18 92 -88 348 83 0 0 chr11 92898503 92898551 -55884921 + (CA)n Simple_repeat Simple_repeat 2 49 0 483 234 121 8 chr11 92899361 92899485 -55883987 - MIR SINE MIR -120 142 5 2020 131 0 3 chr11 92899840 92900130 -55883342 - AluSc SINE Alu -20 289 1 26 0 0 0 chr11 92900359 92900385 -55883087 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr11 92900670 92900692 -55882780 + AT_rich Low_complexity Low_complexity 1 22 0 386 322 8 8 chr11 92900808 92900926 -55882546 - L2 LINE L2 -5 3308 3191 6170 48 2 0 chr11 92901157 92901954 -55881518 - L1PA7 LINE L1 -4 6465 5667 15848 28 0 0 chr11 92901971 92904611 -55878861 - L1PA2 LINE L1 -3 6152 3513 3322 30 0 0 chr11 92904611 92905047 -55878425 + L1PA2 LINE L1 3078 3513 -2633 * 28654 109 10 11 chr11 92905044 92909943 -55873529 - L1PA7 LINE L1 -781 5680 763 187 336 99 8 chr11 92910143 92910274 -55873198 - MIR SINE MIR -6 256 114 337 328 60 0 chr11 92910530 92910646 -55872826 + MIR3 SINE MIR 77 199 -9 1943 152 40 0 chr11 92910679 92911002 -55872470 - MER1B DNA MER1_type -1 336 1 431 362 17 6 chr11 92911025 92911199 -55872273 - MER5B DNA MER1_type -2 176 1 214 330 60 10 chr11 92911522 92911622 -55871850 + L2 LINE L2 3208 3312 -1 26 0 0 0 chr11 92911809 92911835 -55871637 + AT_rich Low_complexity Low_complexity 1 26 0 30 27 0 0 chr11 92911916 92911953 -55871519 + AT_rich Low_complexity Low_complexity 1 37 0 248 279 71 78 chr11 92912400 92912554 -55870918 + MIR SINE MIR 79 231 -31 1054 206 0 19 chr11 92913619 92913833 -55869639 + MER6B DNA MER2_type 1 210 0 2439 141 43 14 chr11 92915014 92915434 -55868038 + MSTB1 LTR MaLR 1 432 0 194 368 21 47 chr11 92915656 92915849 -55867623 - L2 LINE L2 -1414 1900 1713 627 258 106 7 chr11 92916415 92916653 -55866819 - L1MB7 LINE L1 -1 6183 5930 1642 256 152 38 chr11 92916658 92917298 -55866174 - MER21B LTR ERV1 -150 713 1 1815 191 93 95 chr11 92917309 92917390 -55866082 - L1ME1 LINE L1 -227 5939 5859 1841 142 36 0 chr11 92917390 92917671 -55865801 - AluSx SINE Alu -18 294 4 1815 191 93 95 chr11 92917671 92918486 -55864986 - L1ME1 LINE L1 -307 5859 4991 251 104 0 83 chr11 92918486 92918534 -55864938 + U5 snRNA snRNA 1 44 -72 1815 191 93 95 chr11 92918534 92918727 -55864745 - L1ME1 LINE L1 -1175 4991 4799 309 283 115 0 chr11 92918711 92918824 -55864648 + L1ME LINE L1 332 457 -5939 * 1035 242 43 128 chr11 92919627 92920435 -55863037 + L1ME LINE L1 782 1518 -4888 750 229 32 57 chr11 92920429 92920708 -55862764 + L1MC3 LINE L1 5890 6161 -1624 * 2345 89 0 0 chr11 92922084 92922386 -55861086 - AluSg SINE Alu -8 302 1 2341 96 0 0 chr11 92922619 92922922 -55860550 + AluSx SINE Alu 1 303 -9 2790 197 116 77 chr11 92923885 92924853 -55858619 - L1MC5 LINE L1 -32 7929 6907 2146 126 0 0 chr11 92924853 92925147 -55858325 - AluSc SINE Alu -15 294 1 2790 197 116 77 chr11 92925147 92925334 -55858138 - L1MC5 LINE L1 -1054 6907 6729 2144 111 0 7 chr11 92927364 92927661 -55855811 + AluSq SINE Alu 3 297 -16 305 190 102 51 chr11 92927854 92927991 -55855481 - L1M4 LINE L1 -324 5842 5706 436 109 44 51 chr11 92927992 92928129 -55855343 + CT-rich Low_complexity Low_complexity 4 139 0 2044 114 0 0 chr11 92928131 92928404 -55855068 - AluSx SINE Alu -39 273 1 1544 159 37 22 chr11 92928589 92928859 -55854613 + AluJb SINE Alu 10 283 -29 258 105 0 0 chr11 92928860 92928898 -55854574 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 189 107 0 0 chr11 92929304 92929332 -55854140 + (GA)n Simple_repeat Simple_repeat 1 28 0 1469 201 68 26 chr11 92929967 92930185 -55853287 - MLT1F1 LTR MaLR -210 357 119 2355 66 0 3 chr11 92930185 92930474 -55852998 - AluY SINE Alu -13 298 11 1469 201 68 26 chr11 92930474 92930594 -55852878 - MLT1F1 LTR MaLR -448 119 5 484 278 75 42 chr11 92930596 92930922 -55852550 - L1M4 LINE L1 -2349 3797 3451 2051 93 23 33 chr11 92930922 92931223 -55852249 - AluSc SINE Alu 0 309 12 484 278 75 42 chr11 92931223 92931272 -55852200 - L1M4 LINE L1 -2695 3451 3405 21 0 0 0 chr11 92931576 92931597 -55851875 + AT_rich Low_complexity Low_complexity 1 21 0 1911 131 35 0 chr11 92931779 92932061 -55851411 + AluSx SINE Alu 2 293 -19 218 121 61 0 chr11 92932695 92932761 -55850711 + (TA)n Simple_repeat Simple_repeat 2 71 0 203 125 25 0 chr11 92933479 92933519 -55849953 + (TG)n Simple_repeat Simple_repeat 2 42 0 660 26 0 0 chr11 92934250 92934262 -55849210 + (TTCC)n Simple_repeat Simple_repeat 1 90 0 660 26 0 0 chr11 92934262 92934340 -55849132 + (TTCC)n Simple_repeat Simple_repeat 2 79 0 1959 115 59 0 chr11 92934384 92934672 -55848800 - AluSp SINE Alu -6 307 3 1080 143 65 5 chr11 92936910 92937127 -55846345 - L1MA4A LINE L1 0 6303 6074 260 193 0 18 chr11 92937148 92937205 -55846267 - L1MA4A LINE L1 -334 5969 5914 186 43 0 0 chr11 92937354 92937377 -55846095 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 320 199 43 7 chr11 92937463 92937604 -55845868 + CT-rich Low_complexity Low_complexity 3 148 0 215 283 0 33 chr11 92937606 92937666 -55845806 + polypyrimidine Low_complexity Low_complexity 4 61 0 1092 99 0 0 chr11 92938050 92938191 -55845281 + AluSg SINE Alu 8 148 -162 2226 98 0 0 chr11 92938611 92938906 -55844566 + AluSx SINE Alu 1 295 -17 22 0 0 0 chr11 92939112 92939134 -55844338 + AT_rich Low_complexity Low_complexity 1 22 0 2491 171 7 80 chr11 92939392 92939970 -55843502 - L1MC1 LINE L1 -7 6326 5791 417 280 48 8 chr11 92940053 92940178 -55843294 - MIR SINE MIR -101 161 32 598 12 37 12 chr11 92940913 92940995 -55842477 + (TTATG)n Simple_repeat Simple_repeat 2 85 0 1896 152 0 0 chr11 92940995 92941272 -55842200 - AluSx SINE Alu -33 279 3 1261 192 0 0 chr11 92941276 92941500 -55841972 - AluJb SINE Alu -14 298 75 21 0 0 0 chr11 92941566 92941587 -55841885 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr11 92941660 92941698 -55841774 + AT_rich Low_complexity Low_complexity 1 38 0 2449 43 0 7 chr11 92941703 92942002 -55841470 + AluY SINE Alu 3 299 -12 2156 100 13 6 chr11 92942011 92942322 -55841150 + AluSq SINE Alu 1 313 0 1892 113 3 26 chr11 92942650 92942959 -55840513 - AluY SINE Alu -9 302 1 1596 128 28 0 chr11 92943070 92943143 -55840329 + AluSx SINE Alu 54 123 -189 270 81 0 0 chr11 92943143 92943180 -55840292 + (CA)n Simple_repeat Simple_repeat 2 38 0 1596 128 28 0 chr11 92943180 92943356 -55840116 + AluSx SINE Alu 123 310 -2 21 0 0 0 chr11 92943969 92943990 -55839482 + AT_rich Low_complexity Low_complexity 1 21 0 419 316 198 5 chr11 92944691 92944878 -55838594 + MIR SINE MIR 25 247 -15 243 353 50 22 chr11 92945205 92945344 -55838128 + MIR3 SINE MIR 3 145 -63 2045 145 0 13 chr11 92946244 92946555 -55836917 + AluSx SINE Alu 3 309 -3 25 0 0 0 chr11 92946689 92946714 -55836758 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr11 92947535 92947563 -55835909 + AT_rich Low_complexity Low_complexity 1 28 0 686 261 54 61 chr11 92948804 92949099 -55834373 + L1MC/D LINE L1 5350 5642 -2166 1040 196 19 107 chr11 92949395 92949768 -55833704 - L1MB8 LINE L1 -3 6175 5836 23 54 0 0 chr11 92949772 92949809 -55833663 + AT_rich Low_complexity Low_complexity 1 37 0 277 279 81 44 chr11 92949903 92950039 -55833433 - MIR SINE MIR -2 260 120 832 169 6 49 chr11 92950187 92950370 -55833102 + MER3 DNA MER1_type 2 129 -80 3042 256 99 39 chr11 92950371 92951430 -55832042 + L1MEc LINE L1 40 1323 -5073 1915 169 3 0 chr11 92951430 92951725 -55831747 - AluSx SINE Alu -16 296 1 3042 256 99 39 chr11 92951725 92952084 -55831388 + L1MEc LINE L1 1323 1659 -4737 1491 211 92 25 chr11 92952149 92952345 -55831127 + L1MEc LINE L1 1921 2102 -4113 2111 137 3 0 chr11 92952345 92952651 -55830821 + AluSx SINE Alu 3 309 -3 1491 211 92 25 chr11 92952651 92952933 -55830539 + L1MEc LINE L1 2102 2405 -3810 606 194 59 41 chr11 92952926 92953096 -55830376 + L1MA10 LINE L1 6154 6326 -8 * 254 171 0 0 chr11 92953101 92953142 -55830330 + MER3 DNA MER1_type 162 202 -7 182 273 0 0 chr11 92953200 92953244 -55830228 + L2 LINE L2 3270 3313 0 260 336 97 0 chr11 92953253 92953366 -55830106 + MIR3 SINE MIR 76 199 -9 799 289 102 16 chr11 92953594 92953898 -55829574 + L2 LINE L2 2980 3309 -4 413 354 124 6 chr11 92954086 92954264 -55829208 - MIR SINE MIR -56 206 8 183 156 0 0 chr11 92954754 92954786 -55828686 + GA-rich Low_complexity Low_complexity 4 35 0 22 70 0 0 chr11 92954811 92954854 -55828618 + AT_rich Low_complexity Low_complexity 1 43 0 1456 119 46 0 chr11 92955732 92955950 -55827522 + MER30 DNA MER1_type 2 229 -1 21 0 0 0 chr11 92957031 92957052 -55826420 + AT_rich Low_complexity Low_complexity 1 21 0 3918 92 103 2 chr11 92957052 92957682 -55825790 - L1MA2 LINE L1 0 6304 5611 38 22 0 0 chr11 92958946 92958991 -55824481 + AT_rich Low_complexity Low_complexity 1 45 0 2601 133 33 26 chr11 92960846 92961336 -55822136 - L1MA3 LINE L1 0 6305 5813 43837 40 2 2 chr11 92961343 92967487 -55815985 - L1PA3 LINE L1 -4 6151 9 3250 100 2 4 chr11 92967529 92967998 -55815474 - L1MA3 LINE L1 -492 5813 5346 7766 155 44 112 chr11 92968007 92970184 -55813288 - L1MA3 LINE L1 -1398 4748 2721 335 309 220 25 chr11 92970304 92970858 -55812614 - L2 LINE L2 -594 2720 2059 346 298 42 16 chr11 92970879 92971020 -55812452 + MIR SINE MIR 45 189 -65 292 254 207 12 chr11 92971026 92971098 -55812374 + MER112 DNA MER1_type 1 58 -202 201 74 0 0 chr11 92971098 92971125 -55812347 + (TA)n Simple_repeat Simple_repeat 1 27 0 292 254 207 12 chr11 92971125 92971221 -55812251 + MER112 DNA MER1_type 58 202 -58 181 333 211 8 chr11 92971328 92971589 -55811883 - L2 LINE L2 -1269 2045 1732 2278 92 7 7 chr11 92971978 92972282 -55811190 + AluSp SINE Alu 1 304 -9 387 0 0 0 chr11 92972288 92972331 -55811141 + (TG)n Simple_repeat Simple_repeat 2 44 0 272 349 12 0 chr11 92973857 92973940 -55809532 + MIR SINE MIR 59 142 -120 675 194 23 0 chr11 92974309 92974438 -55809034 + FLAM_C SINE Alu 1 132 -11 213 229 0 21 chr11 92974508 92974556 -55808916 + CT-rich Low_complexity Low_complexity 1 47 0 1046 182 0 6 chr11 92974942 92975118 -55808354 + FAM SINE Alu 1 175 0 205 330 20 0 chr11 92976258 92976358 -55807114 + CT-rich Low_complexity Low_complexity 1 102 0 * 287 314 0 0 chr11 92976289 92976359 -55807113 + polypyrimidine Low_complexity Low_complexity 2 71 0 204 179 0 0 chr11 92976366 92976405 -55807067 + (TG)n Simple_repeat Simple_repeat 2 40 0 694 173 220 9 chr11 92976840 92977054 -55806418 + MIR SINE MIR 1 259 -3 1126 187 47 8 chr11 92977083 92977340 -55806132 + L1MB8 LINE L1 5903 6169 -9 27 81 0 0 chr11 92977551 92977613 -55805859 + AT_rich Low_complexity Low_complexity 1 62 0 186 103 0 0 chr11 92978372 92978401 -55805071 + (CTG)n Simple_repeat Simple_repeat 2 30 0 189 171 0 0 chr11 92978825 92978860 -55804612 + (TG)n Simple_repeat Simple_repeat 2 36 0 326 244 33 0 chr11 92980330 92980420 -55803052 - MER5A DNA MER1_type -87 102 10 295 320 201 16 chr11 92980477 92980721 -55802751 - L3b LINE CR1 -118 1465 1177 1225 219 32 14 chr11 92981083 92981362 -55802110 - AluJo SINE Alu -18 294 11 422 268 129 79 chr11 92981380 92981963 -55801509 - L1ME4a LINE L1 -153 5968 5357 23 0 0 0 chr11 92981972 92981995 -55801477 + AT_rich Low_complexity Low_complexity 1 23 0 307 331 34 7 chr11 92983115 92983263 -55800209 - MIR3 SINE MIR -3 205 54 205 184 0 20 chr11 92983667 92983716 -55799756 + (TCTCTG)n Simple_repeat Simple_repeat 3 50 0 221 56 0 28 chr11 92983734 92983770 -55799702 + (TTTTC)n Simple_repeat Simple_repeat 2 36 0 184 353 86 7 chr11 92985923 92986062 -55797410 + L2 LINE L2 2070 2219 -1095 586 328 153 13 chr11 92986141 92986592 -55796880 - L2 LINE L2 -1878 1436 923 2123 116 3 0 chr11 92987151 92987444 -55796028 - AluSx SINE Alu -18 294 1 308 111 19 0 chr11 92987582 92987636 -55795836 + (TTTCC)n Simple_repeat Simple_repeat 2 56 0 234 192 0 0 chr11 92987637 92987689 -55795783 - Alu SINE Alu 0 302 251 333 0 0 0 chr11 92987708 92987745 -55795727 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 728 150 0 8 chr11 92987745 92987865 -55795607 - FLAM_C SINE Alu -24 119 1 21 0 0 0 chr11 92988731 92988752 -55794720 + AT_rich Low_complexity Low_complexity 1 21 0 7665 23 0 0 chr11 92988795 92989875 -55793597 - L1PA3 LINE L1 0 6155 5077 1586 134 16 53 chr11 92990884 92991111 -55792361 + MER33 DNA MER1_type 3 216 -2369 1603 192 0 20 chr11 92991111 92991403 -55792069 + AluJb SINE Alu 3 288 -24 1586 134 16 53 chr11 92991403 92991495 -55791977 + MER33 DNA MER1_type 216 310 -14 2065 134 0 6 chr11 92991498 92991812 -55791660 - AluSx SINE Alu 0 312 1 1648 200 3 13 chr11 92991912 92992217 -55791255 - AluJo SINE Alu -9 303 2 245 353 90 41 chr11 92992597 92992719 -55790753 + MIR3 SINE MIR 13 140 -68 232 283 87 33 chr11 92993219 92993311 -55790161 - MIR SINE MIR -77 185 89 232 204 0 0 chr11 92993550 92993599 -55789873 - MER69 DNA AcHobo -809 417 369 622 194 0 0 chr11 92994135 92994243 -55789229 + FLAM_C SINE Alu 1 108 -35 411 119 0 0 chr11 92994243 92994310 -55789162 + (TG)n Simple_repeat Simple_repeat 2 68 0 227 114 23 0 chr11 92994310 92994354 -55789118 + (TA)n Simple_repeat Simple_repeat 1 45 0 28 79 0 0 chr11 92994439 92994502 -55788970 + AT_rich Low_complexity Low_complexity 1 63 0 23 0 0 0 chr11 92995100 92995123 -55788349 + AT_rich Low_complexity Low_complexity 1 23 0 2273 74 3 7 chr11 92995123 92995420 -55788052 - AluSq SINE Alu -17 296 1 308 267 57 9 chr11 92995717 92995822 -55787650 - MIR SINE MIR -62 200 91 183 156 0 0 chr11 92995963 92995995 -55787477 + (TA)n Simple_repeat Simple_repeat 1 32 0 201 39 0 0 chr11 92996012 92996038 -55787434 + (TG)n Simple_repeat Simple_repeat 2 27 0 2137 112 0 10 chr11 92996124 92996429 -55787043 - AluSx SINE Alu -10 302 1 28 0 0 0 chr11 92996429 92996457 -55787015 + AT_rich Low_complexity Low_complexity 1 28 0 2039 132 3 0 chr11 92996600 92996888 -55786584 - AluSx SINE Alu -23 289 1 2183 125 0 0 chr11 92996974 92997279 -55786193 - AluSq SINE Alu -8 305 1 231 300 210 30 chr11 92997425 92997658 -55785814 + L2 LINE L2 2696 2970 -344 1896 110 38 28 chr11 92997830 92998121 -55785351 - AluSx SINE Alu -7 305 12 1398 203 59 60 chr11 92998148 92998595 -55784877 - L1ME1 LINE L1 -9 6157 5724 315 208 91 0 chr11 92998950 92999027 -55784445 - MIR SINE MIR -84 178 95 219 268 18 0 chr11 92999749 92999805 -55783667 + L2 LINE L2 2676 2732 -582 207 363 194 0 chr11 93000130 93000254 -55783218 + L2 LINE L2 3117 3264 -8 348 133 80 27 chr11 93000772 93000847 -55782625 - L2 LINE L2 -5 3308 3230 887 325 48 10 chr11 93001131 93001445 -55782027 + MLT1I LTR MaLR 67 392 -17 593 178 0 78 chr11 93001446 93001575 -55781897 - MER5A DNA MER1_type 0 189 71 482 199 111 111 chr11 93001579 93001716 -55781756 - Charlie2 DNA MER1_type -2566 216 77 2275 91 0 7 chr11 93001716 93002025 -55781447 - AluSq SINE Alu -6 307 1 482 199 111 111 chr11 93002025 93002103 -55781369 - Charlie2 DNA MER1_type -2704 78 1 193 238 0 0 chr11 93002242 93002284 -55781188 + MIR SINE MIR 100 141 -121 2222 104 16 0 chr11 93002515 93002822 -55780650 + AluSq SINE Alu 1 312 -1 2170 102 0 7 chr11 93003036 93003340 -55780132 + AluSg1 SINE Alu 1 302 -7 4644 118 105 162 chr11 93004765 93006109 -55777363 - pTR5 LTR ERV1 0 2438 1172 181 294 78 0 chr11 93006695 93006746 -55776726 + L2 LINE L2 3258 3312 -1 2228 88 0 0 chr11 93006853 93007137 -55776335 + AluSc SINE Alu 1 284 -25 198 0 0 0 chr11 93007155 93007177 -55776295 + (TATG)n Simple_repeat Simple_repeat 2 23 0 21 71 0 0 chr11 93007615 93007657 -55775815 + AT_rich Low_complexity Low_complexity 1 42 0 241 150 42 83 chr11 93008309 93008429 -55775043 + FLAM_C SINE Alu 3 117 -16 1565 109 49 8 chr11 93008647 93008912 -55774560 - L1MA5A LINE L1 -10 6287 6012 234 0 0 0 chr11 93008912 93008938 -55774534 + (T)n Simple_repeat Simple_repeat 1 26 0 207 0 0 0 chr11 93009074 93009097 -55774375 + (A)n Simple_repeat Simple_repeat 1 23 0 5343 137 18 16 chr11 93009097 93009978 -55773494 - L1MC1 LINE L1 -23 6310 5428 2461 135 11 68 chr11 93010450 93010909 -55772563 - Tigger2a DNA MER2_type 0 434 2 383 263 30 38 chr11 93013579 93013712 -55769760 - MIR SINE MIR 0 262 131 315 153 51 0 chr11 93013722 93013781 -55769691 - MSTB2 LTR MaLR -10 447 386 9752 227 34 11 chr11 93013855 93017167 -55766305 + L1PA13 LINE L1 1354 4770 -2027 1863 59 0 0 chr11 93017789 93018011 -55765461 + AluY SINE Alu 86 307 -4 199 248 108 62 chr11 93018057 93018186 -55765286 + MIR SINE MIR 124 258 -4 1779 199 0 3 chr11 93018581 93018887 -55764585 + AluSx SINE Alu 1 305 -7 27 62 0 0 chr11 93018923 93018971 -55764501 + AT_rich Low_complexity Low_complexity 1 48 0 191 205 231 51 chr11 93019728 93019806 -55763666 + L2 LINE L2 3181 3272 0 22 0 0 0 chr11 93020235 93020257 -55763215 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr11 93021087 93021115 -55762357 + AT_rich Low_complexity Low_complexity 1 28 0 1154 265 104 47 chr11 93021318 93021828 -55761644 - MLT1H LTR MaLR -8 541 3 1580 140 120 29 chr11 93021946 93022254 -55761218 + MER44D DNA MER2_type 2 607 -2 455 291 70 107 chr11 93023394 93023545 -55759927 + L3 LINE CR1 1256 1411 -166 2184 108 7 0 chr11 93023545 93023842 -55759630 + AluSp SINE Alu 1 299 -14 455 291 70 107 chr11 93023842 93024017 -55759455 + L3 LINE CR1 1411 1570 -7 801 165 50 149 chr11 93024047 93024289 -55759183 + MER20 DNA MER1_type 1 218 -1 2336 94 0 0 chr11 93024721 93025009 -55758463 + AluSx SINE Alu 1 288 -24 25 51 0 0 chr11 93025103 93025142 -55758330 + AT_rich Low_complexity Low_complexity 1 39 0 1097 228 0 0 chr11 93025289 93025491 -55757981 - MLT1B LTR MaLR -2 388 187 727 214 53 33 chr11 93025529 93025772 -55757700 - MLT1B LTR MaLR -164 232 1 21 0 0 0 chr11 93026965 93026986 -55756486 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr11 93027910 93027933 -55755539 + AT_rich Low_complexity Low_complexity 1 23 0 2036 99 54 3 chr11 93027957 93028251 -55755221 + AluY SINE Alu 1 309 -2 2442 53 0 10 chr11 93028262 93028561 -55754911 + AluY SINE Alu 3 298 -13 2346 93 6 3 chr11 93028567 93028879 -55754593 + AluSq SINE Alu 1 313 0 2274 81 0 23 chr11 93029207 93029517 -55753955 - AluY SINE Alu -8 303 1 556 93 0 0 chr11 93029628 93029703 -55753769 + AluSq/x SINE Alu 54 128 -185 1830 153 7 23 chr11 93029815 93030115 -55753357 - AluJb SINE Alu -7 305 11 391 308 162 26 chr11 93030649 93030902 -55752570 - MLT1J LTR MaLR -37 474 236 605 178 0 0 chr11 93030966 93031056 -55752416 + LTR18A LTR ERVL 1 90 -267 1535 129 95 4 chr11 93031234 93031475 -55751997 + LTR18A LTR ERVL 95 357 0 18285 169 19 19 chr11 93031489 93032219 -55751253 + HERVL18 LTR ERVL 9 738 -5309 192 79 158 0 chr11 93032219 93032257 -55751215 - L3b LINE CR1 -258 1325 1282 18285 169 19 19 chr11 93032257 93034546 -55748926 + HERVL18 LTR ERVL 737 3065 -2982 1210 223 20 0 chr11 93034546 93034793 -55748679 - MER21B LTR ERV1 -593 270 19 317 178 93 112 chr11 93034791 93034898 -55748574 - MER21B LTR ERV1 -757 106 2 * 290 313 83 10 chr11 93035204 93035300 -55748172 - MER91A DNA MER1_type 0 196 94 517 318 53 0 chr11 93035300 93035470 -55748002 - MER91A DNA MER1_type -17 179 1 311 328 92 11 chr11 93035657 93035928 -55747544 - L2 LINE L2 -1108 2206 1914 678 288 42 78 chr11 93036402 93036760 -55746712 - MLT1K LTR MaLR -55 533 189 212 356 117 27 chr11 93036855 93037077 -55746395 + L2 LINE L2 2843 3084 -188 * 286 229 102 34 chr11 93037067 93037185 -55746287 + MIR SINE MIR 126 251 -11 279 310 0 44 chr11 93037225 93037338 -55746134 - MER94 DNA DNA -25 109 2 282 343 46 9 chr11 93037877 93037985 -55745487 + L2 LINE L2 3158 3269 -3 314 222 42 14 chr11 93038565 93038637 -55744835 - LTR33A LTR ERVL -4 519 446 342 242 21 21 chr11 93038906 93039001 -55744471 - MLT2E LTR ERVL -496 132 38 197 327 0 0 chr11 93039075 93039130 -55744342 - L2 LINE L2 -1 3312 3258 184 311 16 16 chr11 93039170 93039231 -55744241 + L2 LINE L2 3180 3240 -32 325 244 47 0 chr11 93039621 93039707 -55743765 - L1ME LINE L1 -303 5818 5729 403 260 89 27 chr11 93039961 93040107 -55743365 + MIR3 SINE MIR 42 196 -12 242 264 42 28 chr11 93040499 93040571 -55742901 + L2 LINE L2 3192 3264 -8 541 252 46 32 chr11 93041057 93041250 -55742222 - MIR SINE MIR -65 197 10 361 280 57 38 chr11 93041300 93041457 -55742015 - MIR SINE MIR -34 228 69 499 274 15 76 chr11 93041870 93041989 -55741483 + L2 LINE L2 2603 2708 -606 2180 96 0 0 chr11 93041989 93042296 -55741176 + AluSx SINE Alu 10 316 0 499 274 15 76 chr11 93042296 93042372 -55741100 + L2 LINE L2 2708 2787 -527 438 315 84 84 chr11 93042404 93042810 -55740662 + L2 LINE L2 2862 3267 -5 253 264 144 48 chr11 93044107 93044232 -55739240 - MIR SINE MIR -110 152 16 184 338 15 15 chr11 93044664 93044732 -55738740 + MER5A DNA MER1_type 15 82 -107 655 174 5 121 chr11 93044926 93045116 -55738356 + MER58C DNA MER1_type 44 211 -4 287 221 162 66 chr11 93045208 93045344 -55738128 + MER103 DNA DNA 18 166 0 234 329 118 26 chr11 93045744 93045896 -55737576 + MIR3 SINE MIR 42 207 -1 1915 121 17 22 chr11 93046701 93047048 -55736424 - MER4A LTR ERV1 0 664 261 614 162 0 10 chr11 93047048 93047147 -55736325 - MER4A LTR ERV1 -566 98 1 236 375 62 37 chr11 93047202 93047445 -55736027 - L2 LINE L2 -187 3085 2837 321 26 0 0 chr11 93047600 93047638 -55735834 + (CA)n Simple_repeat Simple_repeat 2 39 0 2383 163 8 3 chr11 93047810 93048171 -55735301 + MLT1A1 LTR MaLR 1 363 -2 266 334 114 39 chr11 93048605 93049091 -55734381 - L2 LINE L2 -13 3259 2719 3157 184 173 18 chr11 93049091 93049927 -55733545 - LTR28 LTR ERV1 0 1020 4 1482 144 6 113 chr11 93050015 93050456 -55733016 - Tigger5 DNA MER2_type 0 2323 33 252 0 0 0 chr11 93051676 93051704 -55731768 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 352 246 84 23 chr11 93051709 93051924 -55731548 + L1MEc LINE L1 826 1053 -5343 980 236 73 39 chr11 93051933 93052318 -55731154 + L1MEc LINE L1 1824 2221 -4175 * 3675 244 32 61 chr11 93052305 93052381 -55731091 + L1MEc LINE L1 2889 2966 -3249 1720 163 0 14 chr11 93052381 93052663 -55730809 + AluSx SINE Alu 1 278 -34 3675 244 32 61 chr11 93052663 93053199 -55730273 + L1MEc LINE L1 2966 3516 -2699 2111 174 33 33 chr11 93053199 93053386 -55730086 + MSTD LTR MaLR 5 191 -205 2355 84 0 13 chr11 93053386 93053685 -55729787 + AluY SINE Alu 2 296 -15 2111 174 33 33 chr11 93053685 93053889 -55729583 + MSTD LTR MaLR 190 396 0 3675 244 32 61 chr11 93053889 93054692 -55728780 + L1MEc LINE L1 3516 4264 -1951 207 0 0 0 chr11 93054714 93054737 -55728735 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2015 122 4 0 chr11 93054740 93055019 -55728453 - AluY SINE Alu -26 285 6 25 0 0 0 chr11 93055023 93055048 -55728424 + AT_rich Low_complexity Low_complexity 1 25 0 1350 155 43 43 chr11 93055048 93055306 -55728166 - AluJb SINE Alu -24 288 31 243 0 0 0 chr11 93055412 93055439 -55728033 + (A)n Simple_repeat Simple_repeat 1 27 0 1000 281 208 19 chr11 93055439 93055915 -55727557 - L2 LINE L2 -613 2701 2136 21 36 0 0 chr11 93056672 93056700 -55726772 + AT_rich Low_complexity Low_complexity 1 28 0 431 159 0 0 chr11 93056898 93056967 -55726505 + L1MA5A LINE L1 5203 5271 -875 * 1365 135 20 33 chr11 93056961 93057206 -55726266 + L1MA5A LINE L1 5783 6024 -273 2314 92 3 25 chr11 93057206 93057523 -55725949 + AluSx SINE Alu 1 310 -2 212 264 0 0 chr11 93058962 93059015 -55724457 + (TATG)n Simple_repeat Simple_repeat 4 56 0 191 200 0 0 chr11 93059237 93059272 -55724200 + L2 LINE L2 3236 3270 -2 640 291 75 18 chr11 93059356 93059634 -55723838 + L1ME LINE L1 5523 5816 -354 982 260 4 18 chr11 93059933 93059949 -55723523 - AluSx SINE Alu 0 312 297 1204 260 3 0 chr11 93059949 93060261 -55723211 - AluSq SINE Alu 0 313 1 982 260 4 18 chr11 93060261 93060517 -55722955 - AluSx SINE Alu -15 297 44 2125 110 0 35 chr11 93060617 93060927 -55722545 - AluSx SINE Alu -13 299 1 937 321 97 9 chr11 93060930 93061320 -55722152 + L2 LINE L2 2690 3153 -160 195 42 0 0 chr11 93061320 93061344 -55722128 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 937 321 97 9 chr11 93061344 93061517 -55721955 + L2 LINE L2 3153 3309 -4 6471 53 1 4 chr11 93062495 93063298 -55720174 - L1PA8A LINE L1 -27 6104 5304 2299 89 3 0 chr11 93063474 93063766 -55719706 - AluSp SINE Alu -20 293 1 442 243 138 21 chr11 93064091 93064280 -55719192 + MIR SINE MIR 39 249 -13 200 268 56 14 chr11 93065317 93065388 -55718084 + L2 LINE L2 3187 3260 -12 434 254 0 49 chr11 93065689 93065811 -55717661 + MIR SINE MIR 147 262 0 183 281 101 85 chr11 93066008 93066207 -55717265 - L2 LINE L2 -481 2833 2632 2060 131 7 0 chr11 93067588 93067886 -55715586 + AluSx SINE Alu 1 300 -12 2082 111 7 10 chr11 93067887 93068184 -55715288 + AluSq SINE Alu 1 296 -17 1885 133 52 35 chr11 93068242 93068611 -55714861 - THE1C LTR MaLR 0 375 1 469 353 0 8 chr11 93068656 93068789 -55714683 - L2 LINE L2 -3 3269 3138 196 241 19 37 chr11 93069183 93069237 -55714235 - MIR SINE MIR -1 261 209 447 256 165 43 chr11 93069498 93069728 -55713744 + MIR SINE MIR 5 262 0 180 0 0 0 chr11 93069731 93069751 -55713721 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 488 343 50 41 chr11 93069751 93069993 -55713479 - L2 LINE L2 -17 3255 3012 1560 200 7 10 chr11 93070339 93070634 -55712838 - AluJo SINE Alu -18 294 1 2231 131 3 20 chr11 93072164 93072507 -55710965 + MER1B DNA MER1_type 1 337 0 355 278 115 16 chr11 93072535 93072697 -55710775 + MIR SINE MIR 38 206 -40 1703 177 0 39 chr11 93073171 93073481 -55709991 + AluJo SINE Alu 1 298 -14 22 56 0 0 chr11 93074362 93074398 -55709074 + AT_rich Low_complexity Low_complexity 1 36 0 2301 81 0 3 chr11 93074574 93074890 -55708582 + AluSq SINE Alu 1 315 0 31 26 0 0 chr11 93075137 93075175 -55708297 + AT_rich Low_complexity Low_complexity 1 38 0 1878 155 10 10 chr11 93075798 93076101 -55707371 - AluSx SINE Alu -9 303 1 585 316 134 26 chr11 93076991 93077333 -55706139 + L2 LINE L2 2935 3313 0 1113 117 98 24 chr11 93079603 93079808 -55703664 + L1PA16 LINE L1 5947 6166 0 788 188 59 12 chr11 93079808 93079978 -55703494 + MLT1B LTR MaLR 168 345 -45 27 0 0 0 chr11 93080164 93080191 -55703281 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr11 93080212 93080240 -55703232 + AT_rich Low_complexity Low_complexity 1 28 0 221 116 0 23 chr11 93080265 93080308 -55703164 + (TA)n Simple_repeat Simple_repeat 1 42 0 1940 239 59 47 chr11 93080972 93081654 -55701818 - L1MEc LINE L1 -3716 2502 1855 1592 219 33 0 chr11 93081654 93081983 -55701489 - MER58B DNA MER1_type 0 341 2 1940 239 59 47 chr11 93081983 93082256 -55701216 - L1MEc LINE L1 -4363 1855 1587 22 35 0 0 chr11 93083056 93083085 -55700387 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 93083332 93083353 -55700119 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr11 93083450 93083472 -55700000 + AT_rich Low_complexity Low_complexity 1 22 0 968 250 28 102 chr11 93083880 93084535 -55698937 - L1MC5 LINE L1 -54 7907 7302 1632 220 58 56 chr11 93084710 93085318 -55698154 - L1MC5 LINE L1 -728 7233 6625 180 0 0 0 chr11 93085436 93085456 -55698016 + (TG)n Simple_repeat Simple_repeat 1 20 0 192 40 0 0 chr11 93085456 93085481 -55697991 + (GA)n Simple_repeat Simple_repeat 2 26 0 904 288 101 21 chr11 93085483 93085858 -55697614 - L2 LINE L2 -444 2870 2466 181 382 59 29 chr11 93086253 93086355 -55697117 - L2 LINE L2 -19 3253 3149 23 33 0 0 chr11 93086355 93086385 -55697087 + AT_rich Low_complexity Low_complexity 1 30 0 208 250 77 0 chr11 93086930 93086982 -55696490 + L2 LINE L2 3258 3313 0 183 42 0 0 chr11 93087527 93087551 -55695921 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2278 101 10 3 chr11 93088033 93088339 -55695133 - AluSp SINE Alu -5 308 1 22 0 0 0 chr11 93088631 93088653 -55694819 + AT_rich Low_complexity Low_complexity 1 22 0 521 269 56 6 chr11 93089032 93089192 -55694280 + MIR SINE MIR 20 187 -75 791 247 8 79 chr11 93089247 93089514 -55693958 - MIR SINE MIR 0 262 15 26 30 0 0 chr11 93090314 93090347 -55693125 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr11 93093148 93093177 -55690295 + AT_rich Low_complexity Low_complexity 1 29 0 1396 220 7 36 chr11 93093593 93093902 -55689570 - AluJo SINE Alu -12 300 1 299 119 0 17 chr11 93094661 93094720 -55688752 + (TC)n Simple_repeat Simple_repeat 2 59 0 678 283 121 93 chr11 93096149 93096637 -55686835 + MLT1L LTR MaLR 5 446 -65 314 107 13 120 chr11 93096645 93096720 -55686752 - Ricksha DNA DNA -2340 906 840 2663 167 35 57 chr11 93096726 93097272 -55686200 - MLT2B3 LTR ERVL -20 534 1 659 119 6 0 chr11 93097519 93097536 -55685936 - L1M4 LINE L1 -535 5639 5624 2901 127 39 11 chr11 93097536 93098000 -55685472 - L1PB3 LINE L1 -2 6152 5676 659 119 6 0 chr11 93098000 93098090 -55685382 - L1M4 LINE L1 -550 5624 5528 1613 177 3 41 chr11 93098091 93098385 -55685087 - AluJb SINE Alu -29 283 1 362 236 113 10 chr11 93100034 93100164 -55683308 - MIR SINE MIR -67 141 43 1963 293 19 13 chr11 93100260 93100895 -55682577 + L1MEc LINE L1 40 678 -5718 2156 65 59 24 chr11 93100905 93101195 -55682277 + AluY SINE Alu 1 300 -11 180 0 0 0 chr11 93101305 93101325 -55682147 + (T)n Simple_repeat Simple_repeat 1 20 0 2966 288 103 44 chr11 93101491 93103329 -55680143 - HAL1 LINE L1 -560 1947 1 207 0 0 0 chr11 93104311 93104334 -55679138 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 626 321 193 21 chr11 93104358 93104835 -55678637 - L3 LINE CR1 -312 1265 707 1049 309 77 8 chr11 93104866 93105245 -55678227 - MLT1I LTR MaLR -4 405 1 556 342 48 4 chr11 93105253 93105484 -55677988 - L3 LINE CR1 -901 676 436 201 345 0 64 chr11 93105541 93105651 -55677821 + MIR SINE MIR 48 150 -112 186 290 86 21 chr11 93105716 93105809 -55677663 - L3 LINE CR1 -1185 392 294 773 336 39 12 chr11 93106059 93106389 -55677083 + MLT1I LTR MaLR 71 409 0 508 302 53 57 chr11 93107487 93107732 -55675740 + L2 LINE L2 3027 3270 -2 345 247 0 0 chr11 93108173 93108250 -55675222 - MIR SINE MIR -136 126 50 309 236 34 34 chr11 93108419 93108508 -55674964 + MIR SINE MIR 9 97 -165 490 250 103 4 chr11 93109482 93109646 -55673826 + MIR SINE MIR 30 218 -44 182 349 90 48 chr11 93110040 93110206 -55673266 - MER5B DNA MER1_type -5 173 1 414 260 81 43 chr11 93110334 93110520 -55672952 - MIR SINE MIR -56 206 13 212 292 200 8 chr11 93111316 93111436 -55672036 - L2 LINE L2 -14 3258 3116 200 349 68 40 chr11 93112208 93112457 -55671015 - L2 LINE L2 -705 2609 2354 258 343 19 9 chr11 93112996 93113104 -55670368 + L2 LINE L2 2929 3037 -235 814 234 119 0 chr11 93113162 93113380 -55670092 + MIR SINE MIR 7 250 -12 286 138 52 0 chr11 93113618 93113676 -55669796 + L1MA3 LINE L1 6243 6303 -2 267 231 55 44 chr11 93113789 93113880 -55669592 + MLT1K LTR MaLR 213 304 -284 390 333 18 68 chr11 93114072 93114291 -55669181 - MIR SINE MIR -32 230 23 1298 228 11 39 chr11 93115103 93115671 -55667801 + LTR49-int LTR ERV1 1987 2618 -3713 264 349 12 0 chr11 93116017 93116100 -55667372 + MIR SINE MIR 59 142 -120 759 178 23 0 chr11 93116469 93116598 -55666874 + FLAM_C SINE Alu 1 132 -11 213 229 0 21 chr11 93116668 93116716 -55666756 + CT-rich Low_complexity Low_complexity 1 47 0 1067 182 0 6 chr11 93117102 93117278 -55666194 + FAM SINE Alu 1 175 0 205 330 20 0 chr11 93118419 93118519 -55664953 + CT-rich Low_complexity Low_complexity 1 102 0 * 287 314 0 0 chr11 93118450 93118520 -55664952 + polypyrimidine Low_complexity Low_complexity 2 71 0 204 179 0 0 chr11 93118527 93118566 -55664906 + (TG)n Simple_repeat Simple_repeat 2 40 0 687 173 220 9 chr11 93119001 93119215 -55664257 + MIR SINE MIR 1 259 -3 1110 183 47 8 chr11 93119244 93119501 -55663971 + L1MB8 LINE L1 5903 6169 -9 27 81 0 0 chr11 93119712 93119774 -55663698 + AT_rich Low_complexity Low_complexity 1 62 0 186 103 0 0 chr11 93120535 93120564 -55662908 + (CTG)n Simple_repeat Simple_repeat 2 30 0 189 171 0 0 chr11 93120988 93121023 -55662449 + (TG)n Simple_repeat Simple_repeat 2 36 0 346 244 33 0 chr11 93122494 93122584 -55660888 - MER5A DNA MER1_type -87 102 10 287 299 213 29 chr11 93122641 93122885 -55660587 - L3b LINE CR1 -118 1465 1177 1272 222 29 11 chr11 93123247 93123526 -55659946 - AluJo SINE Alu -18 294 11 247 256 126 84 chr11 93123544 93124125 -55659347 - L1ME4a LINE L1 -153 5968 5356 23 0 0 0 chr11 93124136 93124159 -55659313 + AT_rich Low_complexity Low_complexity 1 23 0 297 331 34 7 chr11 93125278 93125426 -55658046 - MIR3 SINE MIR -3 205 54 205 184 0 20 chr11 93125830 93125879 -55657593 + (TCTCTG)n Simple_repeat Simple_repeat 3 50 0 221 56 0 28 chr11 93125897 93125933 -55657539 + (TTTTC)n Simple_repeat Simple_repeat 2 36 0 606 328 153 13 chr11 93128302 93128753 -55654719 - L2 LINE L2 -1878 1436 923 29963 51 1 2 chr11 93129150 93133098 -55650374 - L1P LINE L1 -2198 3948 9 22 0 0 0 chr11 93133113 93133135 -55650337 + AT_rich Low_complexity Low_complexity 1 22 0 3024 107 2 4 chr11 93133139 93133608 -55649864 - L1M1 LINE L1 -492 5813 5346 4372 161 32 0 chr11 93133617 93134499 -55648973 - L1M1 LINE L1 -1398 4748 3839 426 175 134 12 chr11 93134494 93134665 -55648807 - L1M1 LINE L1 -2925 3221 3030 * 2258 110 3 0 chr11 93134817 93135116 -55648356 - AluSq SINE Alu -10 303 4 887 209 224 17 chr11 93135117 93135537 -55647935 - MER69 DNA AcHobo -442 2084 1578 212 197 13 105 chr11 93136414 93136490 -55646982 + L2 LINE L2 3025 3093 -179 216 67 0 0 chr11 93137259 93137289 -55646183 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 399 359 31 0 chr11 93137553 93137712 -55645760 + L2 LINE L2 2562 2725 -589 * 973 313 86 12 chr11 93137703 93138122 -55645350 + L2 LINE L2 2864 3313 0 1023 189 42 14 chr11 93138390 93138602 -55644870 - MER20 DNA MER1_type -1 218 1 766 179 19 0 chr11 93139055 93139217 -55644255 + L1MA4A LINE L1 4548 4712 -1434 677 227 53 0 chr11 93139226 93139365 -55644107 + L1PA13 LINE L1 1 150 -6637 10435 170 27 5 chr11 93139365 93142068 -55641404 + L1PA13 LINE L1 4071 6810 -4 1476 181 10 10 chr11 93142070 93142373 -55641099 + L1MA4A LINE L1 4706 5008 -1138 1210 147 58 0 chr11 93142375 93142633 -55640839 + L1MA4A LINE L1 5100 5372 -774 2482 79 0 3 chr11 93142635 93142940 -55640532 + AluY SINE Alu 2 305 -6 4969 127 38 28 chr11 93143140 93144077 -55639395 + L1MA4A LINE L1 5352 6298 -5 295 239 0 0 chr11 93144706 93144773 -55638699 + MER81 DNA DNA 2 68 -46 543 380 39 39 chr11 93145007 93145315 -55638157 + L2 LINE L2 2961 3268 -4 230 387 75 0 chr11 93145568 93145674 -55637798 - L2 LINE L2 0 3272 3159 2273 48 0 11 chr11 93145774 93146045 -55637427 + AluY SINE Alu 30 297 -14 283 340 26 39 chr11 93147422 93147578 -55635894 + L2 LINE L2 2931 3084 -188 297 258 108 0 chr11 93148022 93148115 -55635357 + L2 LINE L2 3168 3270 -2 394 207 11 0 chr11 93148587 93148674 -55634798 + L1MB1 LINE L1 6075 6162 -6 347 288 8 25 chr11 93148794 93148912 -55634560 - MIR3 SINE MIR -89 119 4 406 279 96 7 chr11 93150048 93150184 -55633288 - MIR SINE MIR -35 227 80 194 286 76 19 chr11 93150188 93150293 -55633179 + L2 LINE L2 3197 3307 -6 199 256 100 22 chr11 93150499 93150589 -55632883 + MIR SINE MIR 116 212 -50 863 243 110 7 chr11 93150972 93151264 -55632208 + MER5C DNA MER1_type 3 324 0 387 203 167 58 chr11 93151582 93151720 -55631752 - MIR SINE MIR -55 153 1 1281 155 16 93 chr11 93151873 93152196 -55631276 + MLT1B LTR MaLR 1 298 -92 221 374 44 44 chr11 93153042 93153224 -55630248 + MER5A DNA MER1_type 3 184 -5 270 0 0 0 chr11 93153256 93153286 -55630186 + (CA)n Simple_repeat Simple_repeat 2 31 0 306 345 76 0 chr11 93153289 93153408 -55630064 - L2 LINE L2 -9 3263 3136 1124 152 24 19 chr11 93153525 93153735 -55629737 + MER20 DNA MER1_type 6 216 -3 3867 43 0 0 chr11 93154147 93154612 -55628860 - L1PA5 LINE L1 -8 6146 5682 188 238 12 62 chr11 93154682 93154762 -55628710 - MIR SINE MIR -73 135 60 187 320 40 20 chr11 93154903 93155003 -55628469 - MIR SINE MIR -57 205 104 225 350 94 12 chr11 93155101 93155261 -55628211 - MLT1H LTR MaLR -182 367 195 202 321 25 25 chr11 93155407 93155488 -55627984 - MIR3 SINE MIR -124 84 4 198 0 0 0 chr11 93155574 93155596 -55627876 + (T)n Simple_repeat Simple_repeat 1 22 0 221 346 75 9 chr11 93155887 93155994 -55627478 - L2 LINE L2 0 3272 3159 234 248 88 80 chr11 93157364 93157501 -55625971 - L1MC5 LINE L1 -71 7890 7753 486 0 0 0 chr11 93157610 93157664 -55625808 + (CA)n Simple_repeat Simple_repeat 1 54 0 805 221 34 43 chr11 93157665 93157987 -55625485 - L1MC5 LINE L1 -385 7576 7258 1399 194 39 94 chr11 93158024 93158352 -55625120 - MLT1B LTR MaLR 0 390 88 1276 231 134 23 chr11 93158352 93158703 -55624769 + MSTD LTR MaLR 5 394 -2 1399 194 39 94 chr11 93158703 93158787 -55624685 - MLT1B LTR MaLR -302 88 1 387 272 101 0 chr11 93158795 93158953 -55624519 - L1MC5 LINE L1 -755 7206 7033 * 13228 149 15 73 chr11 93158944 93159220 -55624252 + L1PA15-16 LINE L1 1 291 -6558 1617 149 147 57 chr11 93159220 93159437 -55624035 - MSTA LTR MaLR 0 428 232 1977 143 0 7 chr11 93159437 93159745 -55623727 - AluSx SINE Alu 0 306 1 1617 149 147 57 chr11 93159745 93159914 -55623558 - MSTA LTR MaLR -196 232 5 13228 149 15 73 chr11 93159914 93162377 -55621095 + L1PA15-16 LINE L1 291 2582 -4267 10267 145 12 19 chr11 93162384 93164214 -55619258 + L1P LINE L1 11 1827 -4319 4194 52 11 0 chr11 93164214 93165130 -55618342 + L1PA6 LINE L1 4904 5826 -328 1830 92 0 4 chr11 93165133 93165371 -55618101 + AluY SINE Alu 1 237 -74 1881 124 0 7 chr11 93165486 93165761 -55617711 - AluSx SINE Alu -39 273 1 320 292 62 0 chr11 93167607 93167703 -55615769 - L2 LINE L2 -19 3294 3193 212 259 87 108 chr11 93167904 93168089 -55615383 - L2 LINE L2 -403 2911 2731 10906 135 50 6 chr11 93168732 93170448 -55613024 - Ricksha_c DNA DNA -7 2039 250 830 174 0 0 chr11 93170452 93170590 -55612882 - Ricksha_c DNA DNA -1905 141 4 1618 260 74 29 chr11 93170885 93171439 -55612033 + MLT1G LTR MaLR 10 588 -2 538 121 24 0 chr11 93171606 93171689 -55611783 - MER1B DNA MER1_type 0 333 249 * 1167 157 0 29 chr11 93171688 93171892 -55611580 - MER1B DNA MER1_type -99 198 1 396 303 137 11 chr11 93172083 93172258 -55611214 - MIR SINE MIR -3 259 63 590 314 95 21 chr11 93173052 93173249 -55610223 - L2 LINE L2 -9 3304 3077 2140 105 18 0 chr11 93173249 93173549 -55609923 + AluSg SINE Alu 1 305 0 590 314 95 21 chr11 93173549 93173633 -55609839 - L2 LINE L2 -236 3077 3001 43875 33 23 2 chr11 93174230 93180253 -55603219 + L1PA3 LINE L1 1 6151 -4 2815 131 33 26 chr11 93180261 93180751 -55602721 + L1MA3 LINE L1 5813 6305 0 38 22 0 0 chr11 93182594 93182639 -55600833 + AT_rich Low_complexity Low_complexity 1 45 0 4153 102 106 20 chr11 93183832 93184531 -55598941 + L1MA2 LINE L1 5546 6304 0 21 0 0 0 chr11 93184531 93184552 -55598920 + AT_rich Low_complexity Low_complexity 1 21 0 1564 119 46 0 chr11 93185633 93185851 -55597621 - MER30 DNA MER1_type -1 229 2 728 146 0 0 chr11 93186375 93186471 -55597001 - AluJ/FLAM SINE Alu -210 102 7 2103 230 25 65 chr11 93186579 93187269 -55596203 + L1M4 LINE L1 4632 5293 -853 2030 248 38 97 chr11 93187268 93187978 -55595494 + L1ME1 LINE L1 1 668 -6191 * 2427 199 49 66 chr11 93187978 93189049 -55594423 + L1ME1 LINE L1 1122 2169 -4790 1877 235 57 33 chr11 93189043 93189592 -55593880 + L1ME1 LINE L1 6091 6652 -325 * 555 241 99 147 chr11 93189640 93189859 -55593613 - L1ME3A LINE L1 -99 6065 5837 2291 118 0 6 chr11 93189859 93190172 -55593300 - AluSx SINE Alu -1 311 1 555 241 99 147 chr11 93190172 93190488 -55592984 - L1ME3A LINE L1 -327 5837 5556 449 231 16 16 chr11 93190627 93190748 -55592724 - L1ME LINE L1 -5944 126 6 21 0 0 0 chr11 93190768 93190789 -55592683 + AT_rich Low_complexity Low_complexity 1 21 0 8269 19 0 0 chr11 93190789 93191861 -55591611 - L1PA2 LINE L1 -7 6148 5077 1510 137 32 57 chr11 93192871 93193093 -55590379 + MER33 DNA MER1_type 3 216 -2369 1585 191 0 24 chr11 93193093 93193386 -55590086 + AluJb SINE Alu 3 288 -24 1510 137 32 57 chr11 93193386 93193477 -55589995 + MER33 DNA MER1_type 216 308 -16 2103 230 25 65 chr11 93193687 93194377 -55589095 + L1M4 LINE L1 4632 5293 -853 1813 259 40 96 chr11 93194376 93195084 -55588388 + L1ME1 LINE L1 1 668 -6191 * 2460 194 49 67 chr11 93195084 93196156 -55587316 + L1ME1 LINE L1 1122 2169 -4790 1877 235 57 33 chr11 93196150 93196699 -55586773 + L1ME1 LINE L1 6091 6652 -325 * 551 239 99 146 chr11 93196747 93196966 -55586506 - L1ME3A LINE L1 -99 6065 5837 2291 118 0 6 chr11 93196966 93197279 -55586193 - AluSx SINE Alu -1 311 1 551 239 99 146 chr11 93197279 93197594 -55585878 - L1ME3A LINE L1 -327 5837 5556 449 231 16 16 chr11 93197733 93197854 -55585618 - L1ME LINE L1 -5944 126 6 43964 32 21 1 chr11 93197887 93203919 -55579553 - L1HS LINE L1 0 6155 1 590 314 95 21 chr11 93204516 93204600 -55578872 + L2 LINE L2 3001 3077 -236 2139 105 18 0 chr11 93204600 93204900 -55578572 - AluSg SINE Alu 0 305 1 590 314 95 21 chr11 93204900 93205097 -55578375 + L2 LINE L2 3077 3304 -9 396 303 137 11 chr11 93205891 93206066 -55577406 + MIR SINE MIR 63 259 -3 1167 157 0 29 chr11 93206257 93206461 -55577011 + MER1B DNA MER1_type 1 198 -99 538 121 24 0 chr11 93206460 93206543 -55576929 + MER1B DNA MER1_type 249 333 0 * 1618 260 74 29 chr11 93206710 93207264 -55576208 - MLT1G LTR MaLR -2 588 10 830 174 0 0 chr11 93207559 93207697 -55575775 + Ricksha_c DNA DNA 4 141 -1905 10876 135 50 7 chr11 93207701 93209418 -55574054 + Ricksha_c DNA DNA 250 2039 -7 212 259 87 108 chr11 93210108 93210293 -55573179 + L2 LINE L2 2731 2911 -403 320 292 62 0 chr11 93210494 93210590 -55572882 + L2 LINE L2 3193 3294 -19 2122 119 0 25 chr11 93212437 93212757 -55570715 + AluSx SINE Alu 1 312 0 241 250 125 0 chr11 93215002 93215098 -55568374 - MIR SINE MIR -81 127 20 230 128 43 0 chr11 93215479 93215526 -55567946 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 374 264 27 18 chr11 93215679 93215791 -55567681 + MIR SINE MIR 103 214 -48 246 62 0 0 chr11 93216158 93216190 -55567282 + (T)n Simple_repeat Simple_repeat 1 32 0 2290 93 6 3 chr11 93217118 93217430 -55566042 + AluSq SINE Alu 1 313 0 9541 35 4 3 chr11 93217630 93218869 -55564603 - L1P2 LINE L1 -708 5447 4207 412 96 0 0 chr11 93219239 93219291 -55564181 + U6 snRNA snRNA 55 106 -1 21 57 0 0 chr11 93219291 93219326 -55564146 + AT_rich Low_complexity Low_complexity 1 35 0 221 295 103 13 chr11 93219369 93219447 -55564025 + L2 LINE L2 2987 3071 -201 1006 151 0 0 chr11 93219490 93219636 -55563836 - FRAM SINE Alu -30 146 1 486 241 41 72 chr11 93219661 93219952 -55563520 + L1MC5 LINE L1 7609 7890 -71 292 231 90 0 chr11 93219988 93220066 -55563406 + L1P LINE L1 4925 5009 -1137 321 323 53 8 chr11 93220751 93220884 -55562588 - MIR3 SINE MIR -6 202 64 11270 40 9 0 chr11 93271239 93271454 -55512018 + L1P LINE L1 2481 2692 -3454 180 0 0 0 chr11 93271454 93271474 -55511998 + (CACAC)n Simple_repeat Simple_repeat 3 22 0 11270 40 9 0 chr11 93271474 93272731 -55510741 + L1P LINE L1 2692 3967 -2179 7837 94 3 5 chr11 93272831 93273957 -55509515 + HERV9 LTR ERV1 1959 3081 -5318 224 340 160 31 chr11 93274311 93274505 -55508967 - L2 LINE L2 -461 2853 2635 482 282 50 11 chr11 93274528 93274709 -55508763 - LTR16A1 LTR ERVL 0 457 270 407 93 47 12 chr11 93275521 93275607 -55507865 - L1MA10 LINE L1 -2 6332 6244 275 71 24 0 chr11 93275608 93275650 -55507822 + (TTCC)n Simple_repeat Simple_repeat 2 44 0 284 314 7 13 chr11 93275652 93275805 -55507667 - L1M4 LINE L1 -1955 4191 4040 337 277 3 3 chr11 93275952 93276110 -55507362 - L1M4 LINE L1 -2355 3791 3634 233 259 25 0 chr11 93276375 93276456 -55507016 - L1MCa LINE L1 -6263 163 81 201 162 0 0 chr11 93276459 93276496 -55506976 + T-rich Low_complexity Low_complexity 4 40 0 204 296 167 9 chr11 93277494 93277602 -55505870 + MIR3 SINE MIR 83 207 -1 1594 211 129 28 chr11 93277953 93278594 -55504878 + L1ME1 LINE L1 1699 2404 -3992 1982 228 37 6 chr11 93278614 93279568 -55503904 + L1ME1 LINE L1 4849 5996 -239 1332 67 0 6 chr11 93279580 93279744 -55503728 + AluY SINE Alu 1 163 -148 255 365 102 10 chr11 93280216 93280413 -55503059 + MIR SINE MIR 3 217 -45 257 326 32 11 chr11 93280495 93280590 -55502882 + MIR SINE MIR 158 254 -8 371 247 11 67 chr11 93280616 93280726 -55502746 + MIR SINE MIR 15 119 -89 204 40 0 0 chr11 93280944 93280969 -55502503 + (TG)n Simple_repeat Simple_repeat 2 26 0 277 313 37 18 chr11 93281189 93281352 -55502120 - L1MC/D LINE L1 -2037 5771 5606 1120 200 60 0 chr11 93281357 93281572 -55501900 + AluJb SINE Alu 1 228 -84 28 48 0 0 chr11 93282012 93282054 -55501418 + AT_rich Low_complexity Low_complexity 1 42 0 9506 55 10 0 chr11 93282093 93284070 -55499402 - L1PA5 LINE L1 -3 6151 4165 3229 30 0 0 chr11 93284174 93284571 -55498901 - L1P LINE L1 -1668 4478 4082 208 252 93 108 chr11 93284741 93285138 -55498334 + L2 LINE L2 1270 1660 -1654 857 311 32 4 chr11 93285169 93285417 -55498055 - MIR SINE MIR -6 256 2 279 332 206 26 chr11 93285466 93285972 -55497500 + L2 LINE L2 1700 2296 -1018 218 262 48 24 chr11 93286118 93286202 -55497270 + MIR3 SINE MIR 75 160 -48 801 234 26 46 chr11 93286265 93286497 -55496975 + MIR SINE MIR 33 261 -1 1734 66 5 0 chr11 93286595 93286807 -55496665 + AluY SINE Alu 82 294 -17 285 355 92 13 chr11 93287091 93287243 -55496229 + L2 LINE L2 2753 2916 -398 196 184 0 0 chr11 93287261 93287299 -55496173 - L2 LINE L2 -2 3311 3274 1869 144 14 7 chr11 93287983 93288275 -55495197 - AluSx SINE Alu -18 294 1 2991 274 82 15 chr11 93288277 93289761 -55493711 - L1MEc LINE L1 -4758 1638 55 371 261 102 38 chr11 93289847 93290004 -55493468 + MIR3 SINE MIR 12 178 -30 243 125 0 0 chr11 93290014 93290054 -55493418 + (TA)n Simple_repeat Simple_repeat 2 41 0 545 212 27 103 chr11 93290345 93290398 -55493074 - MIR SINE MIR -124 138 83 2318 92 3 10 chr11 93290398 93290702 -55492770 + AluSp SINE Alu 1 302 -11 545 212 27 103 chr11 93290702 93290794 -55492678 - MIR SINE MIR -179 83 4 1836 118 31 71 chr11 93291076 93291399 -55492073 - AluSg SINE Alu 0 310 1 491 284 47 26 chr11 93291704 93291894 -55491578 + MIR SINE MIR 3 196 -66 202 245 151 0 chr11 93292399 93292452 -55491020 + MIR SINE MIR 52 112 -150 1514 140 5 0 chr11 93292985 93293199 -55490273 - AluSg/x SINE Alu -19 291 77 433 344 145 27 chr11 93293306 93294021 -55489451 + L2 LINE L2 2469 3259 -13 219 336 39 39 chr11 93294033 93294137 -55489335 + L2 LINE L2 2981 3084 -188 299 264 32 97 chr11 93294189 93294344 -55489128 - MIR SINE MIR 0 262 118 292 372 11 0 chr11 93294349 93294443 -55489029 - L2 LINE L2 -44 3228 3134 638 321 23 10 chr11 93294469 93294709 -55488763 - MIR SINE MIR -2 260 18 195 289 178 37 chr11 93294733 93294868 -55488604 - L2 LINE L2 -177 3095 2942 2699 122 27 15 chr11 93294875 93295466 -55488006 - MER4E LTR ERV1 -1 765 1 214 195 0 0 chr11 93295533 93295574 -55487898 + (TATATG)n Simple_repeat Simple_repeat 6 46 0 216 0 0 0 chr11 93296301 93296325 -55487147 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 236 67 0 44 chr11 93296335 93296380 -55487092 - L1PA2 LINE L1 0 6155 6113 642 12 0 0 chr11 93296380 93296460 -55487012 + L1PA4 LINE L1 5890 5969 -186 198 0 0 0 chr11 93296677 93296699 -55486773 + (T)n Simple_repeat Simple_repeat 1 22 0 207 259 0 49 chr11 93296892 93296973 -55486499 + GA-rich Low_complexity Low_complexity 3 79 0 368 257 59 15 chr11 93297286 93297422 -55486050 - MLT1L LTR MaLR -8 607 466 290 267 33 81 chr11 93297441 93297651 -55485821 - MLT1J LTR MaLR -202 309 110 335 362 31 12 chr11 93297754 93297917 -55485555 - MIR SINE MIR -77 185 20 225 180 0 0 chr11 93298499 93298549 -55484923 + A-rich Low_complexity Low_complexity 1 50 0 553 301 19 0 chr11 93299475 93299631 -55483841 - MER5A DNA MER1_type 0 189 31 342 0 0 0 chr11 93300343 93300381 -55483091 + (GA)n Simple_repeat Simple_repeat 2 39 0 797 118 0 0 chr11 93300464 93300574 -55482898 - THE1C LTR MaLR -265 110 1 366 246 49 41 chr11 93301466 93301588 -55481884 + MIR SINE MIR 32 154 -108 1775 194 0 0 chr11 93301698 93301982 -55481490 + AluJo SINE Alu 1 284 -28 338 236 47 9 chr11 93302483 93302589 -55480883 + MLT1G LTR MaLR 481 590 0 477 261 172 0 chr11 93302600 93302734 -55480738 + MER5A DNA MER1_type 32 188 -1 357 274 196 0 chr11 93303090 93303243 -55480229 - MIR SINE MIR -79 183 1 1152 228 111 78 chr11 93303244 93303256 -55480216 - MLT1G LTR MaLR 0 590 580 2154 123 36 38 chr11 93303256 93303621 -55479851 + THE1B LTR MaLR 1 364 0 1152 228 111 78 chr11 93303621 93304138 -55479334 - MLT1G LTR MaLR -10 580 7 189 0 0 0 chr11 93306041 93306062 -55477410 + (T)n Simple_repeat Simple_repeat 1 21 0 221 281 0 0 chr11 93306354 93306418 -55477054 + (CATCC)n Simple_repeat Simple_repeat 1 64 0 558 298 34 34 chr11 93306873 93307135 -55476337 - MIR SINE MIR 0 262 1 186 302 16 0 chr11 93307299 93307362 -55476110 + L2 LINE L2 2916 2979 -293 2725 222 78 18 chr11 93307392 93308236 -55475236 - L1ME2 LINE L1 -16 6148 5254 1908 118 20 10 chr11 93308973 93309269 -55474203 + THE1B LTR MaLR 66 364 0 9912 107 45 36 chr11 93309269 93310835 -55472637 + THE1B-int LTR MaLR 1 1580 0 2451 127 6 3 chr11 93310835 93311198 -55472274 + THE1B LTR MaLR 1 364 0 231 250 0 0 chr11 93311294 93311342 -55472130 + CT-rich Low_complexity Low_complexity 1 48 0 5603 251 72 39 chr11 93311899 93314874 -55468598 - L1ME2 LINE L1 -890 5256 2183 1098 199 32 83 chr11 93315012 93315289 -55468183 + AluJb SINE Alu 11 273 -39 310 367 113 34 chr11 93315366 93315543 -55467929 + L2 LINE L2 3082 3272 0 232 228 0 35 chr11 93315585 93315642 -55467830 + (TATG)n Simple_repeat Simple_repeat 3 57 0 1899 183 71 9 chr11 93315802 93316240 -55467232 + L1MA7 LINE L1 5576 6040 -251 1282 269 126 26 chr11 93316996 93317629 -55465843 + LTR68 LTR ERV1 1 697 -43 1746 186 68 32 chr11 93317629 93318070 -55465402 - LTR2B LTR ERV1 0 490 34 307 128 0 0 chr11 93318091 93318138 -55465334 + LTR68 LTR ERV1 694 740 0 3253 58 0 9 chr11 93318228 93318673 -55464799 - LTR7 LTR ERV1 -9 441 1 1233 122 10 0 chr11 93320728 93320925 -55462547 + MSTA LTR MaLR 1 199 -229 12386 114 6 33 chr11 93320926 93323748 -55459724 + L1PA7 LINE L1 1 2810 -3651 4048 90 23 0 chr11 93323748 93324299 -55459173 + L1PA7 LINE L1 5902 6469 0 1298 170 17 0 chr11 93324301 93324536 -55458936 + MSTA LTR MaLR 190 428 0 287 264 54 16 chr11 93324630 93324759 -55458713 - L1MC/D LINE L1 -1946 5862 5729 1540 184 40 0 chr11 93324899 93325171 -55458301 + AluJo SINE Alu 1 283 -29 714 263 101 22 chr11 93325194 93325559 -55457913 + L1ME4a LINE L1 5493 5886 -235 782 148 14 0 chr11 93325619 93325761 -55457711 - L1PA16 LINE L1 -135 6031 5888 9586 68 7 16 chr11 93325761 93327864 -55455608 - L1PA6 LINE L1 0 6154 4066 25432 108 23 12 chr11 93327864 93331931 -55451541 - L1PA6 LINE L1 -2024 4122 11 1856 167 30 7 chr11 93332275 93332650 -55450822 - AluSx SINE Alu 0 382 1 274 257 14 14 chr11 93333290 93333360 -55450112 + CT-rich Low_complexity Low_complexity 1 70 0 274 56 0 0 chr11 93333572 93333608 -55449864 - Alu SINE Alu -256 46 11 246 95 0 0 chr11 93333642 93333684 -55449788 + (TC)n Simple_repeat Simple_repeat 2 43 0 423 38 0 0 chr11 93333684 93333737 -55449735 + (CA)n Simple_repeat Simple_repeat 1 53 0 348 159 0 0 chr11 93334544 93334613 -55448859 - L1MA5 LINE L1 0 6300 6232 21 0 0 0 chr11 93334991 93335012 -55448460 + AT_rich Low_complexity Low_complexity 1 21 0 2830 228 14 21 chr11 93335485 93336247 -55447225 - L1ME1 LINE L1 -4 6162 5406 243 190 0 0 chr11 93336496 93336554 -55446918 + CT-rich Low_complexity Low_complexity 2 59 0 206 361 39 15 chr11 93337261 93337391 -55446081 + MIR SINE MIR 20 152 -56 326 323 156 32 chr11 93337847 93338033 -55445439 + L2 LINE L2 2997 3205 -67 250 388 30 0 chr11 93339044 93339178 -55444294 + L3 LINE CR1 1386 1523 -54 1085 200 43 0 chr11 93339277 93339487 -55443985 - MER20 DNA MER1_type 0 219 1 825 261 16 41 chr11 93339785 93340030 -55443442 + MIR SINE MIR 14 252 -10 387 247 58 7 chr11 93340041 93340195 -55443277 - MER104 DNA Tc2 -18 162 1 417 313 123 20 chr11 93340229 93340424 -55443048 + MIR SINE MIR 48 262 0 364 278 203 6 chr11 93340729 93340918 -55442554 - MIR SINE MIR -6 256 32 222 311 122 0 chr11 93341126 93341216 -55442256 - L2 LINE L2 -306 2966 2866 342 309 32 0 chr11 93341218 93341312 -55442160 + L2 LINE L2 3154 3250 -22 185 273 0 0 chr11 93341682 93341726 -55441746 - MIR SINE MIR -167 95 52 342 384 29 12 chr11 93342222 93342394 -55441078 - MIR3 SINE MIR -19 189 15 454 235 35 17 chr11 93342395 93342510 -55440962 + MER5A DNA MER1_type 13 129 -60 188 339 79 8 chr11 93342714 93342841 -55440631 - L2 LINE L2 -1017 2297 2162 1645 127 12 12 chr11 93343642 93343894 -55439578 + AluY SINE Alu 30 281 -30 2372 129 94 82 chr11 93344252 93344274 -55439198 + LTR49 LTR ERV1 2 22 -573 1450 209 91 123 chr11 93344274 93345025 -55438447 + LTR8A LTR ERV1 1 727 0 2372 129 94 82 chr11 93345025 93345406 -55438066 + LTR49 LTR ERV1 22 417 -178 3344 167 36 27 chr11 93345406 93346071 -55437401 - LTR51 LTR ERV1 0 671 1 2372 129 94 82 chr11 93346071 93346253 -55437219 + LTR49 LTR ERV1 417 595 0 258 269 45 0 chr11 93346262 93346329 -55437143 - MIR SINE MIR -65 197 128 2438 212 60 8 chr11 93347339 93347873 -55435599 + MER21B LTR ERV1 1 562 -301 2338 111 11 0 chr11 93347873 93348232 -55435240 + MER41B LTR ERV1 1 363 -272 520 82 0 24 chr11 93348232 93348317 -55435155 + MLT2A2 LTR ERVL 1 83 -370 6558 200 75 24 chr11 93348317 93349904 -55433568 - MER52A LTR ERV1 0 1755 4 1170 209 59 33 chr11 93349904 93350338 -55433134 + MLT2A2 LTR ERVL 86 552 -2 1381 164 52 17 chr11 93350347 93350634 -55432838 + MER41B LTR ERV1 339 635 0 1007 193 57 64 chr11 93350634 93350914 -55432558 + MER21A LTR ERV1 638 915 -16 2354 185 26 11 chr11 93351058 93351512 -55431960 + LTR24 LTR ERV1 7 467 0 2954 176 43 26 chr11 93352021 93352629 -55430843 + LTR29 LTR ERV1 5 622 0 2311 180 18 9 chr11 93352631 93353087 -55430385 + LTR29-int LTR ERV1 1 460 -5871 814 204 50 28 chr11 93353119 93353300 -55430172 + LTR29-int LTR ERV1 442 626 -5705 * 2400 185 46 59 chr11 93353298 93353956 -55429516 + LTR29-int LTR ERV1 751 1399 -4932 1537 177 52 45 chr11 93354064 93354343 -55429129 + LTR29-int LTR ERV1 1372 1648 -4683 315 0 0 0 chr11 93354343 93354378 -55429094 + (CA)n Simple_repeat Simple_repeat 2 36 0 1537 177 52 45 chr11 93354378 93354571 -55428901 + LTR29-int LTR ERV1 1648 1926 -4405 1035 206 10 10 chr11 93354587 93354781 -55428691 + AluJo SINE Alu 9 202 -110 5289 163 28 31 chr11 93354897 93356667 -55426805 + L1PB2 LINE L1 3996 5792 -359 318 26 0 0 chr11 93356667 93356706 -55426766 + (CA)n Simple_repeat Simple_repeat 1 39 0 5289 163 28 31 chr11 93356706 93356929 -55426543 + L1PB2 LINE L1 5792 6014 -137 4305 217 59 30 chr11 93357045 93358581 -55424891 + LTR29-int LTR ERV1 1959 3618 -2713 612 262 4 32 chr11 93358657 93359010 -55424462 + MSTD LTR MaLR 1 428 0 235 299 117 0 chr11 93359269 93359346 -55424126 + MIR SINE MIR 66 151 -57 28 0 0 0 chr11 93361771 93361799 -55421673 + AT_rich Low_complexity Low_complexity 1 28 0 188 236 146 0 chr11 93363086 93363141 -55420331 + L3b LINE CR1 1307 1369 -214 497 256 42 1 chr11 93363187 93363459 -55420013 + MER69 DNA AcHobo 325 628 -598 * 1213 204 45 38 chr11 93363448 93363844 -55419628 + MER69 DNA AcHobo 2122 2520 -6 953 128 7 0 chr11 93364042 93364191 -55419281 - L1MA3 LINE L1 -2 6303 6154 459 151 244 8 chr11 93364219 93364338 -55419134 - MER4C LTR ERV1 -19 446 300 1138 171 132 29 chr11 93364400 93364710 -55418762 - MER4A LTR ERV1 -322 342 1 3910 117 20 25 chr11 93364710 93364729 -55418743 - L1MA3 LINE L1 -148 6157 6139 1849 157 35 35 chr11 93364729 93365104 -55418368 - THE1C LTR MaLR 0 375 1 10202 128 33 5 chr11 93365106 93366642 -55416830 - THE1C-int LTR MaLR -2 1578 1 1908 129 40 30 chr11 93366642 93367013 -55416459 - THE1C LTR MaLR 0 375 1 3910 117 20 25 chr11 93367013 93367188 -55416284 - L1MA3 LINE L1 -166 6139 5965 2303 165 57 0 chr11 93367188 93367593 -55415879 - MSTA LTR MaLR 0 428 1 3910 117 20 25 chr11 93367593 93368078 -55415394 - L1MA3 LINE L1 -340 5965 5476 213 184 122 0 chr11 93368973 93369022 -55414450 + L2 LINE L2 3216 3270 -2 287 336 55 0 chr11 93369174 93369284 -55414188 - MIR SINE MIR -74 188 73 192 269 30 15 chr11 93369424 93369491 -55413981 + L2 LINE L2 3152 3219 -94 242 327 36 40 chr11 93371330 93371608 -55411864 + L1MDa LINE L1 1680 1956 -4584 469 258 0 31 chr11 93371998 93372126 -55411346 + MER94 DNA DNA 6 129 -5 1959 108 0 0 chr11 93372130 93372388 -55411084 + AluSx SINE Alu 6 263 -49 1627 107 8 12 chr11 93372574 93372826 -55410646 - L1PA13 LINE L1 -3 6160 5910 775 159 57 17 chr11 93372928 93373104 -55410368 + L1PB1 LINE L1 5968 6150 -1 1842 179 0 3 chr11 93373145 93373453 -55410019 + AluJo SINE Alu 1 307 -5 216 236 18 18 chr11 93373691 93373746 -55409726 + MIR SINE MIR 193 247 -15 1524 186 32 4 chr11 93373815 93374094 -55409378 - AluJo SINE Alu -23 289 3 292 378 111 0 chr11 93374552 93374687 -55408785 - L2 LINE L2 -22 3250 3101 245 343 0 0 chr11 93375157 93375227 -55408245 - L2 LINE L2 -4 3268 3199 569 305 39 13 chr11 93377571 93377725 -55405747 + MIR SINE MIR 8 165 -97 421 179 26 0 chr11 93378371 93378449 -55405023 - MLT1J LTR MaLR -316 195 116 252 237 51 0 chr11 93379147 93379206 -55404266 + L2 LINE L2 3248 3309 -4 923 207 86 0 chr11 93380138 93380279 -55403193 - AluJo SINE Alu -38 274 114 285 51 0 0 chr11 93380279 93380318 -55403154 + (TTTTA)n Simple_repeat Simple_repeat 5 43 0 923 207 86 0 chr11 93380318 93380350 -55403122 - AluJo SINE Alu -198 114 86 838 302 19 11 chr11 93380534 93380799 -55402673 - LTR40b LTR ERVL -38 424 158 2017 151 3 3 chr11 93380799 93381104 -55402368 - AluSc SINE Alu -4 305 1 3572 160 21 2 chr11 93381105 93381975 -55401497 + L1MA6 LINE L1 4992 5877 -423 632 263 59 16 chr11 93382033 93382219 -55401253 - MIR SINE MIR -60 202 9 30 69 0 0 chr11 93382496 93382554 -55400918 + AT_rich Low_complexity Low_complexity 1 58 0 331 297 125 13 chr11 93382617 93382849 -55400623 + MIR SINE MIR 5 262 0 202 271 21 0 chr11 93383009 93383057 -55400415 + MIR SINE MIR 92 140 -68 687 244 81 12 chr11 93383806 93383978 -55399494 + MER63A DNA MER1_type 3 186 -24 595 299 113 0 chr11 93384762 93384983 -55398489 - MIR SINE MIR -16 246 1 300 311 134 24 chr11 93385217 93385381 -55398091 + MIR3 SINE MIR 3 184 -24 325 265 13 113 chr11 93385390 93385541 -55397931 + LTR40c LTR ERVL 6 141 -324 198 0 0 0 chr11 93385587 93385609 -55397863 + (A)n Simple_repeat Simple_repeat 1 22 0 1889 174 0 13 chr11 93385613 93385924 -55397548 + AluJo SINE Alu 2 308 -4 838 302 19 11 chr11 93385924 93386189 -55397283 + LTR40b LTR ERVL 158 424 -38 923 207 86 0 chr11 93386374 93386406 -55397066 + AluJo SINE Alu 86 114 -198 285 51 0 0 chr11 93386406 93386445 -55397027 + (TAAAA)n Simple_repeat Simple_repeat 5 43 0 923 207 86 0 chr11 93386445 93386586 -55396886 + AluJo SINE Alu 114 274 -38 202 271 21 0 chr11 93387362 93387410 -55396062 - MIR SINE MIR -68 140 92 331 297 125 13 chr11 93387570 93387802 -55395670 - MIR SINE MIR 0 262 5 30 69 0 0 chr11 93387865 93387923 -55395549 + AT_rich Low_complexity Low_complexity 1 58 0 632 263 59 16 chr11 93388200 93388386 -55395086 + MIR SINE MIR 9 202 -60 3572 157 22 13 chr11 93388444 93389315 -55394157 - L1MA6 LINE L1 -423 5877 4999 2473 88 3 0 chr11 93389315 93389623 -55393849 + AluSc SINE Alu 1 309 0 3572 157 22 13 chr11 93389623 93389746 -55393726 - L1MA6 LINE L1 -1301 4999 4879 2300 165 12 9 chr11 93389746 93390168 -55393304 + L1MA6 LINE L1 5865 6295 -5 362 276 220 14 chr11 93390501 93390715 -55392757 + MIR SINE MIR 5 262 0 270 146 0 73 chr11 93391123 93391178 -55392294 - L2 LINE L2 0 3313 3263 778 270 43 57 chr11 93391226 93391711 -55391761 + MER39 LTR ERV1 1 639 -68 6398 158 23 28 chr11 93391712 93392865 -55390607 - L1PB1 LINE L1 -1 6150 5009 2067 120 3 17 chr11 93392865 93393164 -55390308 - AluSx SINE Alu -17 295 1 6398 158 23 28 chr11 93393164 93394263 -55389209 - L1PB1 LINE L1 -1142 5009 3906 264 258 79 11 chr11 93394270 93394359 -55389113 + MER34C LTR ERV1 489 583 -2 341 341 48 18 chr11 93395256 93395485 -55387987 - L2 LINE L2 -345 2969 2734 25475 149 25 28 chr11 93395569 93401938 -55381534 + L1PA8A LINE L1 4 6440 -6 353 216 284 10 chr11 93401949 93402051 -55381421 - MER94 DNA DNA 0 134 5 588 277 121 0 chr11 93402106 93402312 -55381160 + MIR SINE MIR 32 262 0 385 348 72 8 chr11 93402454 93402690 -55380782 - MIR SINE MIR 0 262 12 295 298 10 10 chr11 93403302 93403406 -55380066 + MIR SINE MIR 33 136 -72 1870 194 182 0 chr11 93403684 93404101 -55379371 + MLT1D LTR MaLR 13 505 0 28 0 0 0 chr11 93404224 93404252 -55379220 + AT_rich Low_complexity Low_complexity 1 28 0 458 280 113 20 chr11 93404292 93404442 -55379030 - MIR SINE MIR -58 204 41 193 217 50 17 chr11 93404441 93404501 -55378971 + MIR SINE MIR 201 262 0 * 180 0 0 0 chr11 93405137 93405157 -55378315 + (A)n Simple_repeat Simple_repeat 1 20 0 195 227 27 67 chr11 93405560 93405635 -55377837 + L2 LINE L2 3242 3313 0 236 261 130 0 chr11 93405863 93405932 -55377540 - MIR SINE MIR -127 135 58 216 300 20 15 chr11 93406024 93406105 -55377367 - MIR SINE MIR -85 123 45 1355 118 73 0 chr11 93406391 93406595 -55376877 - AluSg/x SINE Alu -16 296 78 415 230 43 65 chr11 93406665 93406804 -55376668 - MIR SINE MIR -43 219 84 1224 190 47 5 chr11 93407111 93407407 -55376065 - MLT1B LTR MaLR -11 379 11 722 249 37 114 chr11 93408271 93408408 -55375064 + MLT1J1 LTR MaLR 6 152 -298 741 164 30 90 chr11 93408408 93408609 -55374863 - MER53 DNA DNA 0 189 1 722 249 37 114 chr11 93408609 93408960 -55374512 + MLT1J1 LTR MaLR 152 450 0 277 293 57 19 chr11 93408980 93409086 -55374386 - MIR SINE MIR -59 203 94 26 0 0 0 chr11 93409243 93409269 -55374203 + AT_rich Low_complexity Low_complexity 1 26 0 201 39 0 0 chr11 93409381 93409407 -55374065 + (TG)n Simple_repeat Simple_repeat 2 27 0 219 36 0 0 chr11 93409438 93409466 -55374006 + (CA)n Simple_repeat Simple_repeat 2 29 0 1752 213 45 19 chr11 93409497 93409943 -55373529 - MER89 LTR ERV1 0 559 3 419 220 27 16 chr11 93409984 93410106 -55373366 - L1MD2 LINE L1 -28 6140 6016 207 69 0 0 chr11 93410549 93410578 -55372894 + (CCAA)n Simple_repeat Simple_repeat 3 31 0 1530 305 134 15 chr11 93410673 93411346 -55372126 + L1M3a LINE L1 29 781 -5174 * 2981 257 38 45 chr11 93411321 93413626 -55369846 + L1MA9 LINE L1 471 2790 -3244 605 155 39 0 chr11 93413626 93413729 -55369743 + U6 snRNA snRNA 1 107 0 5447 119 12 41 chr11 93413730 93414475 -55368997 + L1MA2 LINE L1 5405 6119 -185 1993 133 7 0 chr11 93414475 93414760 -55368712 + AluSx SINE Alu 2 288 -24 5447 119 12 41 chr11 93414760 93414941 -55368531 + L1MA2 LINE L1 6119 6304 0 2981 257 38 45 chr11 93414941 93415379 -55368093 + L1MA9 LINE L1 2789 2882 -3152 * 7281 164 38 53 chr11 93415361 93416998 -55366474 + L1MA9 LINE L1 3614 5275 -925 1890 109 26 0 chr11 93416998 93417265 -55366207 + AluSq SINE Alu 1 274 -39 414 0 0 0 chr11 93417272 93417318 -55366154 + (TAA)n Simple_repeat Simple_repeat 3 48 0 7281 164 38 53 chr11 93417318 93418264 -55365208 + L1MA9 LINE L1 5281 6197 -3 203 194 15 90 chr11 93418493 93418560 -55364912 + L2 LINE L2 3040 3101 -171 265 289 219 25 chr11 93418618 93418819 -55364653 + MIR SINE MIR 20 259 -3 209 302 119 16 chr11 93418822 93418948 -55364524 + L2 LINE L2 3128 3266 -6 2408 159 0 12 chr11 93419082 93419506 -55363966 + MLT2D LTR ERVL 8 397 0 242 133 111 0 chr11 93419506 93419544 -55363928 - MIR SINE MIR -103 159 117 1581 157 234 11 chr11 93419837 93420187 -55363285 + MSTA LTR MaLR 1 428 0 1283 233 29 3 chr11 93420187 93420498 -55362974 + MER66A LTR ERV1 114 432 -46 499 246 145 29 chr11 93420736 93420943 -55362529 + L2 LINE L2 3080 3310 -3 383 336 70 19 chr11 93421048 93421262 -55362210 + L2 LINE L2 2853 3077 -195 616 283 127 0 chr11 93421590 93421795 -55361677 - MIR SINE MIR 0 262 32 333 294 120 0 chr11 93421900 93421992 -55361480 - L2 LINE L2 -4 3268 3166 344 227 241 7 chr11 93422016 93422157 -55361315 - MER5B DNA MER1_type -2 176 3 378 237 13 112 chr11 93422187 93422339 -55361133 + MER5B DNA MER1_type 24 160 -18 322 269 6 109 chr11 93422189 93422364 -55361108 - MER5A DNA MER1_type -25 164 8 * 282 242 15 15 chr11 93422640 93422706 -55360766 + MER5A DNA MER1_type 122 187 -2 263 260 26 26 chr11 93422804 93422881 -55360591 - MIR SINE MIR -90 172 96 346 335 42 18 chr11 93422996 93423163 -55360309 - MIR3 SINE MIR -1 207 37 180 259 0 0 chr11 93424445 93424499 -55358973 + GA-rich Low_complexity Low_complexity 2 55 0 41623 43 22 6 chr11 93424995 93431043 -55352429 - L1PA3 LINE L1 -2 6153 3 195 179 0 0 chr11 93431078 93431117 -55352355 - L2 LINE L2 -8 3305 3267 * 272 317 120 29 chr11 93431115 93431323 -55352149 - L2 LINE L2 -663 2651 2425 186 43 0 0 chr11 93431461 93431484 -55351988 + (TA)n Simple_repeat Simple_repeat 2 24 0 361 234 158 13 chr11 93431832 93431990 -55351482 - LTR33 LTR ERVL 0 521 341 352 253 181 6 chr11 93432633 93432799 -55350673 + MIR SINE MIR 68 262 0 2004 50 0 0 chr11 93433204 93433494 -55349978 - L1P LINE L1 -728 5427 5138 * 5892 21 0 25 chr11 93433493 93434245 -55349227 + L1PA3 LINE L1 5443 6176 0 1012 225 71 56 chr11 93434328 93434737 -55348735 - MER96B DNA MER1_type 0 417 3 442 246 120 36 chr11 93434757 93434924 -55348548 - MIR SINE MIR -14 248 68 225 233 0 0 chr11 93435914 93435957 -55347515 + L2 LINE L2 3271 3313 0 7759 160 24 1 chr11 93436146 93438223 -55345249 - L1PA12 LINE L1 -224 5944 3819 216 0 0 0 chr11 93438799 93438823 -55344649 + (CAT)n Simple_repeat Simple_repeat 2 25 0 447 322 49 29 chr11 93439981 93440226 -55343246 - MIR SINE MIR -12 250 1 206 313 25 12 chr11 93440273 93440353 -55343119 + L2 LINE L2 2126 2206 -1108 1875 204 139 18 chr11 93441485 93441974 -55341498 - LTR10A LTR ERV1 -61 548 1 294 391 42 14 chr11 93442270 93442485 -55340987 + L2 LINE L2 2825 3045 -227 321 219 16 0 chr11 93443724 93443788 -55339684 - L2 LINE L2 0 3313 3249 816 163 13 31 chr11 93443940 93444121 -55339351 + MER4E LTR ERV1 1 285 -587 * 1325 201 65 54 chr11 93444118 93444200 -55339272 + MER4D LTR ERV1 547 627 -276 1973 98 24 35 chr11 93444200 93444558 -55338914 + AluSp SINE Alu 1 355 0 1325 201 65 54 chr11 93444558 93444827 -55338645 + MER4D LTR ERV1 627 903 0 1243 204 60 23 chr11 93444988 93445340 -55338132 - LTR37A LTR ERV1 -61 365 1 5250 128 4 8 chr11 93445446 93446226 -55337246 - LTR17 LTR ERV1 0 780 4 283 301 60 55 chr11 93446894 93446986 -55336486 - MIR SINE MIR -9 253 163 1775 140 189 16 chr11 93446986 93447351 -55336121 - MSTA LTR MaLR 0 428 1 283 301 60 55 chr11 93447351 93447441 -55336031 - MIR SINE MIR -99 163 70 182 260 52 52 chr11 93447743 93447820 -55335652 - L3 LINE CR1 -1422 155 79 629 164 8 23 chr11 93448266 93448394 -55335078 + FLAM_C SINE Alu 1 126 -17 260 340 45 16 chr11 93449052 93449190 -55334282 + MIR3 SINE MIR 32 168 -50 1725 152 80 37 chr11 93449237 93449586 -55333886 + THE1B LTR MaLR 1 364 0 1473 247 28 92 chr11 93451156 93451722 -55331750 - L1MEc LINE L1 -5759 637 108 1917 64 0 16 chr11 93451722 93451973 -55331499 - AluY SINE Alu -18 293 47 1914 262 137 82 chr11 93452106 93453970 -55329502 - HAL1 LINE L1 -14 2493 528 844 208 6 0 chr11 93454204 93454363 -55329109 + MIR SINE MIR 93 252 -10 197 256 0 0 chr11 93454491 93454534 -55328938 + L2 LINE L2 3256 3298 -15 207 0 0 0 chr11 93458299 93458322 -55325150 + (TGGA)n Simple_repeat Simple_repeat 1 23 0 194 273 196 41 chr11 93458330 93458550 -55324922 - L2 LINE L2 -660 2654 2401 1457 208 116 24 chr11 93458739 93458973 -55324499 - MLT1C LTR MaLR 0 467 256 1812 208 6 3 chr11 93458973 93459338 -55324134 - MER47A DNA MER2_type 0 366 1 1457 208 116 24 chr11 93459338 93459526 -55323946 - MLT1C LTR MaLR -211 256 6 243 269 336 7 chr11 93459540 93459689 -55323783 + L3 LINE CR1 469 666 -911 205 294 29 0 chr11 93459711 93459779 -55323693 + MIR SINE MIR 35 104 -104 296 262 154 89 chr11 93459825 93460149 -55323323 + L1MEd LINE L1 63 407 -5712 421 311 47 40 chr11 93460350 93460646 -55322826 + L1MEd LINE L1 547 844 -5275 * 6560 181 53 23 chr11 93460632 93462043 -55321429 - L1MC3 LINE L1 -1 7784 6332 485 279 105 46 chr11 93462083 93462698 -55320774 + L1MEd LINE L1 926 1473 -4658 19712 133 27 11 chr11 93463200 93463775 -55319697 + L1PA10 LINE L1 1780 2344 -3824 3275 128 2 27 chr11 93463775 93464297 -55319175 + MER9 LTR ERVK 1 509 -2 19712 133 27 11 chr11 93464297 93466795 -55316677 + L1PA10 LINE L1 2344 4800 -1368 501 0 0 42 chr11 93466795 93466867 -55316605 + (TTTAA)n Simple_repeat Simple_repeat 3 71 0 1861 160 7 0 chr11 93466870 93467151 -55316321 - AluSx SINE Alu -29 283 1 19712 133 27 11 chr11 93467151 93468392 -55315080 + L1PA10 LINE L1 4801 6166 -2 319 284 56 14 chr11 93468383 93468598 -55314874 + L1MEd LINE L1 2156 2379 -3750 * 327 295 11 0 chr11 93468741 93468836 -55314636 - MIR SINE MIR -10 252 157 525 313 23 11 chr11 93468838 93469014 -55314458 - MIR SINE MIR -44 218 41 297 345 7 0 chr11 93469158 93469300 -55314172 + L1MEd LINE L1 2666 2808 -3321 23 33 0 0 chr11 93469363 93469393 -55314079 + AT_rich Low_complexity Low_complexity 1 30 0 9340 202 18 18 chr11 93469489 93472943 -55310529 - L1P5 LINE L1 -363 7229 3778 1627 290 34 5 chr11 93472940 93473522 -55309950 - L1P5 LINE L1 -4798 2783 2185 * 420 290 0 0 chr11 93473752 93473852 -55309620 - L1P5 LINE L1 -5399 2182 2083 1061 346 62 32 chr11 93473957 93474549 -55308923 - L1P5 LINE L1 -6177 1397 788 656 150 9 0 chr11 93474560 93474673 -55308799 - L1 LINE L1 -2134 4012 3899 21 0 0 0 chr11 93475290 93475311 -55308161 + AT_rich Low_complexity Low_complexity 1 21 0 8827 24 0 0 chr11 93475311 93477119 -55306353 - L1PA3 LINE L1 -3 6152 4345 1690 288 116 26 chr11 93477943 93478945 -55304527 - L2 LINE L2 -4 3309 2198 266 335 69 69 chr11 93479321 93479509 -55303963 + MIR SINE MIR 20 207 -55 288 324 152 16 chr11 93481386 93481573 -55301899 - MIR SINE MIR -7 255 42 1787 209 85 30 chr11 93481895 93482387 -55301085 + LTR40a LTR ERVL 1 519 0 322 328 84 23 chr11 93483005 93483136 -55300336 - MIR3 SINE MIR -64 144 6 222 393 55 21 chr11 93483563 93483708 -55299764 - L2 LINE L2 -14 3258 3109 1436 184 102 0 chr11 93484039 93484305 -55299167 - AluJo SINE Alu -18 294 2 233 336 88 18 chr11 93484468 93484581 -55298891 - MIR SINE MIR -62 146 26 407 291 10 0 chr11 93484749 93484852 -55298620 - MER5A DNA MER1_type -74 115 12 221 261 50 76 chr11 93485652 93485771 -55297701 - MIR3 SINE MIR -3 205 90 389 317 120 6 chr11 93485869 93486036 -55297436 - MIR SINE MIR -20 242 57 304 276 96 49 chr11 93486776 93487085 -55296387 + L1MEc LINE L1 1303 1485 -4938 918 255 31 54 chr11 93487165 93487682 -55295790 + L1M4 LINE L1 3081 3585 -2561 375 247 157 0 chr11 93487696 93487862 -55295610 + L1M4 LINE L1 3921 4112 -2034 8597 164 43 8 chr11 93487877 93490361 -55293111 - L1MA4 LINE L1 -52 6248 3662 200 59 29 0 chr11 93490361 93490395 -55293077 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 8597 164 43 8 chr11 93490395 93490568 -55292904 - L1MA4 LINE L1 -2638 3662 3497 817 243 0 0 chr11 93490575 93490752 -55292720 - FRAM SINE Alu 0 176 1 1762 216 19 0 chr11 93490752 93491229 -55292243 - L1MA4 LINE L1 -2640 3506 3021 738 216 60 18 chr11 93491500 93491718 -55291754 - L1MA9 LINE L1 -40 6272 6046 248 189 0 133 chr11 93491713 93491803 -55291669 + L1MA8 LINE L1 5949 6026 -265 * 222 287 37 79 chr11 93491935 93492099 -55291373 - MIR SINE MIR -56 206 50 198 184 61 0 chr11 93492181 93492230 -55291242 - L3 LINE CR1 -3 1574 1523 2111 56 0 0 chr11 93492410 93492701 -55290771 - AluY SINE Alu 0 323 33 239 206 0 32 chr11 93493609 93493672 -55289800 + (CAGAGA)n Simple_repeat Simple_repeat 3 63 0 6585 76 0 14 chr11 93494144 93495112 -55288360 - L1PA10 LINE L1 -2 6166 5200 225 0 0 0 chr11 93495138 93495163 -55288309 + (T)n Simple_repeat Simple_repeat 1 25 0 225 0 0 0 chr11 93495290 93495315 -55288157 + (T)n Simple_repeat Simple_repeat 1 25 0 608 306 125 15 chr11 93495853 93496252 -55287220 + L1ME3A LINE L1 5495 5937 -233 2158 40 0 0 chr11 93496350 93496598 -55286874 - AluY SINE Alu -17 294 47 2020 275 129 38 chr11 93496731 93497936 -55285536 - HAL1 LINE L1 -14 2493 1180 251 187 0 55 chr11 93497948 93498039 -55285433 + T-rich Low_complexity Low_complexity 5 90 0 238 211 19 58 chr11 93498057 93498161 -55285311 - HAL1 LINE L1 -1364 1143 1044 262 260 50 60 chr11 93498490 93498590 -55284882 - L2 LINE L2 -16 3297 3199 307 327 134 40 chr11 93498893 93499095 -55284377 - MIR SINE MIR -10 252 32 216 276 79 51 chr11 93499890 93500067 -55283405 + MIR SINE MIR 16 218 -44 191 300 0 0 chr11 93502534 93502574 -55280898 + MIR SINE MIR 34 73 -135 611 265 72 11 chr11 93502691 93502872 -55280600 + MIR SINE MIR 7 198 -64 646 207 14 111 chr11 93502875 93503083 -55280389 + MLT1G LTR MaLR 1 188 -402 304 253 10 40 chr11 93503084 93503183 -55280289 + L1MDb LINE L1 1039 1134 -5275 832 176 72 16 chr11 93503184 93503227 -55280245 + L1MA9 LINE L1 6109 6148 -164 342 0 0 0 chr11 93503227 93503265 -55280207 + (CA)n Simple_repeat Simple_repeat 1 38 0 832 176 72 16 chr11 93503265 93503414 -55280058 + L1MA9 LINE L1 6148 6312 0 4016 214 75 15 chr11 93503418 93504586 -55278886 + L1MDb LINE L1 1125 2361 -4045 707 183 176 40 chr11 93504590 93504889 -55278583 + L1MD2 LINE L1 5911 6242 0 27 29 0 0 chr11 93505008 93505042 -55278430 + AT_rich Low_complexity Low_complexity 1 34 0 8768 176 55 17 chr11 93505167 93507914 -55275558 - L1PA15 LINE L1 -1 6164 3362 365 307 65 0 chr11 93508272 93508425 -55275047 - MLT1K LTR MaLR -14 574 412 359 244 156 31 chr11 93509375 93509535 -55273937 - MIR SINE MIR -49 213 34 223 175 16 16 chr11 93511230 93511293 -55272179 + CT-rich Low_complexity Low_complexity 3 65 0 987 106 0 0 chr11 93511320 93511452 -55272020 + AluY SINE Alu 1 132 -179 180 0 0 0 chr11 93511452 93511472 -55272000 + (A)n Simple_repeat Simple_repeat 1 20 0 1116 61 0 100 chr11 93511609 93511827 -55271645 + AluY SINE Alu 119 318 0 344 288 141 16 chr11 93513502 93513686 -55269786 - MIR SINE MIR -11 251 45 268 277 0 0 chr11 93513919 93513984 -55269488 - MIR SINE MIR -10 252 188 213 289 39 29 chr11 93514278 93514382 -55269090 - L2 LINE L2 -493 2821 2717 227 281 114 35 chr11 93515991 93516105 -55267367 - L2 LINE L2 -6 3307 3185 1818 120 55 21 chr11 93516198 93516524 -55266948 + MER44D DNA MER2_type 3 609 0 350 405 42 16 chr11 93516826 93517332 -55266140 - L2 LINE L2 -400 2914 2396 218 336 125 8 chr11 93517457 93517585 -55265887 + MIR SINE MIR 6 148 -114 776 272 106 57 chr11 93518255 93518737 -55264735 - MLT1J LTR MaLR 0 450 1 867 251 101 8 chr11 93518903 93519495 -55263977 - L1ME2 LINE L1 -14 6150 5451 264 276 95 52 chr11 93519746 93519862 -55263610 + MIR SINE MIR 125 245 -17 198 191 0 0 chr11 93519916 93519958 -55263514 + (CAT)n Simple_repeat Simple_repeat 1 42 0 360 375 22 0 chr11 93520448 93520584 -55262888 - MIR SINE MIR -119 143 5 307 362 31 8 chr11 93520815 93520942 -55262530 + MIR3 SINE MIR 27 156 -52 1014 144 40 80 chr11 93520942 93521010 -55262462 + L1MA8 LINE L1 6048 6117 -174 1784 152 7 27 chr11 93521010 93521307 -55262165 - AluSx SINE Alu -21 291 1 1014 144 40 80 chr11 93521307 93521488 -55261984 + L1MA8 LINE L1 6117 6287 -4 322 264 70 16 chr11 93521542 93521671 -55261801 - MER104 DNA Tc2 -1 179 44 400 321 46 8 chr11 93522257 93522388 -55261084 + MIR SINE MIR 41 176 -86 363 308 46 8 chr11 93522575 93522705 -55260767 + L2 LINE L2 3179 3313 0 434 283 117 22 chr11 93524242 93524422 -55259050 - L3 LINE CR1 -574 1003 807 644 159 8 63 chr11 93525912 93526038 -55257434 - FLAM_C SINE Alu -18 125 7 260 76 76 13 chr11 93527465 93527544 -55255928 + (TA)n Simple_repeat Simple_repeat 1 84 0 1104 171 0 0 chr11 93527803 93527973 -55255499 + AluJb SINE Alu 116 285 -27 447 19 0 0 chr11 93528073 93528125 -55255347 + (TTCC)n Simple_repeat Simple_repeat 4 55 0 270 279 16 0 chr11 93528559 93528620 -55254852 + L2 LINE L2 3186 3247 -25 389 109 16 0 chr11 93528657 93528721 -55254751 + (TGGA)n Simple_repeat Simple_repeat 4 68 0 229 360 70 65 chr11 93529265 93529465 -55254007 - L2 LINE L2 -27 3245 3045 458 237 68 8 chr11 93529577 93529695 -55253777 + LTR16A LTR ERVL 320 444 -6 20679 61 12 2 chr11 93530590 93533330 -55250142 - L1P LINE L1 -2716 3430 664 5003 33 1 0 chr11 93533430 93534472 -55249000 + L1PA3 LINE L1 4789 5832 -323 829 178 69 61 chr11 93534586 93534817 -55248655 + MER34 LTR ERV1 370 542 0 230 390 52 0 chr11 93535318 93535395 -55248077 - L2 LINE L2 -49 3223 3143 366 23 0 0 chr11 93535878 93535921 -55247551 + (TG)n Simple_repeat Simple_repeat 1 43 0 320 252 8 79 chr11 93537260 93537387 -55246085 + MER94 DNA DNA 1 118 -16 1473 256 99 23 chr11 93539128 93540083 -55243389 - L1ME LINE L1 -2640 3440 2413 846 274 46 16 chr11 93540097 93540600 -55242872 - L1ME LINE L1 -3714 2385 1885 1140 228 140 73 chr11 93540600 93541591 -55241881 - L1ME LINE L1 -4532 1548 465 554 349 55 4 chr11 93542050 93542285 -55241187 + MIR SINE MIR 3 249 -13 355 383 32 7 chr11 93542896 93543081 -55240391 - MIR SINE MIR -64 198 12 450 154 0 0 chr11 93543789 93543867 -55239605 + (TG)n Simple_repeat Simple_repeat 1 78 0 244 226 16 16 chr11 93544625 93544687 -55238785 + GA-rich Low_complexity Low_complexity 1 62 0 267 308 37 19 chr11 93544785 93544892 -55238580 - MER94 DNA DNA 0 134 26 1783 133 4 0 chr11 93545225 93545480 -55237992 - THE1C LTR MaLR -119 256 1 496 265 138 26 chr11 93545497 93545686 -55237786 - MIR SINE MIR -30 232 23 210 313 25 0 chr11 93546441 93546521 -55236951 + CT-rich Low_complexity Low_complexity 1 82 0 633 261 167 9 chr11 93547607 93547829 -55235643 + MIR SINE MIR 6 262 0 2518 78 0 0 chr11 93548221 93548530 -55234942 + AluY SINE Alu 3 311 0 22 35 0 0 chr11 93548749 93548778 -55234694 + AT_rich Low_complexity Low_complexity 1 29 0 183 167 0 0 chr11 93549488 93549518 -55233954 - MIR SINE MIR 0 262 233 1342 40 0 23 chr11 93549959 93550132 -55233340 - L1PA8 LINE L1 -6 6166 5998 7598 20 2 0 chr11 93551045 93552681 -55230791 + L1PA4 LINE L1 4501 6140 -15 252 265 80 31 chr11 93552955 93553117 -55230355 + L1ME4a LINE L1 5845 6014 -107 1976 173 0 0 chr11 93553151 93553458 -55230014 - AluSx SINE Alu -5 307 1 21 36 0 0 chr11 93553771 93553799 -55229673 + AT_rich Low_complexity Low_complexity 1 28 0 189 254 270 0 chr11 93554074 93554137 -55229335 - MIR SINE MIR -2 260 181 1686 169 16 38 chr11 93554156 93554506 -55228966 - AluJo SINE Alu 0 343 1 406 224 41 0 chr11 93554515 93554613 -55228859 - MIR SINE MIR -108 154 53 239 356 61 0 chr11 93554972 93555087 -55228385 - L2 LINE L2 -1 3271 3150 264 30 0 0 chr11 93555750 93555783 -55227689 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 212 253 110 44 chr11 93555834 93555925 -55227547 - MIR SINE MIR -114 148 52 26 0 0 0 chr11 93555958 93555984 -55227488 + AT_rich Low_complexity Low_complexity 1 26 0 465 314 66 18 chr11 93556371 93556597 -55226875 - L3 LINE CR1 -17 1560 1324 204 292 101 34 chr11 93556722 93556811 -55226661 - L2 LINE L2 -5 3267 3173 216 0 0 0 chr11 93556870 93556894 -55226578 + (CCCTAA)n Simple_repeat Simple_repeat 2 25 0 291 254 17 0 chr11 93556900 93556959 -55226513 + L2 LINE L2 3213 3272 0 206 234 21 0 chr11 93557388 93557435 -55226037 + (CA)n Simple_repeat Simple_repeat 1 48 0 425 341 35 12 chr11 93557454 93557624 -55225848 + MIR SINE MIR 13 186 -76 322 306 106 12 chr11 93558059 93558219 -55225253 + MIR SINE MIR 49 223 -39 346 335 121 0 chr11 93558391 93558564 -55224908 + MIR SINE MIR 69 262 0 354 45 0 0 chr11 93558700 93558744 -55224728 + (CA)n Simple_repeat Simple_repeat 1 44 0 22 0 0 0 chr11 93558854 93558876 -55224596 + AT_rich Low_complexity Low_complexity 1 22 0 269 157 22 45 chr11 93559313 93559402 -55224070 + CT-rich Low_complexity Low_complexity 1 87 0 243 304 0 33 chr11 93559416 93559508 -55223964 + CT-rich Low_complexity Low_complexity 4 92 0 200 316 38 0 chr11 93559514 93559593 -55223879 - L2 LINE L2 -1 3312 3231 191 300 0 0 chr11 93559720 93559770 -55223702 - MIR SINE MIR -67 141 92 492 264 74 0 chr11 93560527 93560648 -55222824 - L2 LINE L2 -2 3270 3141 230 94 75 0 chr11 93560692 93560745 -55222727 + (TA)n Simple_repeat Simple_repeat 1 57 0 2043 177 70 13 chr11 93560751 93561135 -55222337 - MER47B DNA MER2_type -12 406 1 992 250 104 8 chr11 93561150 93561410 -55222062 + MSTD LTR MaLR 112 396 0 6137 213 22 34 chr11 93561410 93563070 -55220402 + L1MA7 LINE L1 2404 4043 -2103 3698 178 51 15 chr11 93563065 93564280 -55219192 + L1MA7 LINE L1 4786 6041 -250 * 21 0 0 0 chr11 93564378 93564399 -55219073 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr11 93564736 93564758 -55218714 + (A)n Simple_repeat Simple_repeat 1 22 0 247 307 53 0 chr11 93564861 93564936 -55218536 - MIR SINE MIR -130 132 54 416 412 55 22 chr11 93564996 93565579 -55217893 - L2 LINE L2 -349 2965 2364 1752 137 54 98 chr11 93566002 93566410 -55217062 - MLT1B LTR MaLR 0 390 1 257 309 101 22 chr11 93566846 93566985 -55216487 + MIR SINE MIR 5 154 -108 * 271 256 146 0 chr11 93566979 93567061 -55216411 - MIR SINE MIR -1 261 168 2036 219 22 95 chr11 93567388 93568063 -55215409 - MLT1E2 LTR MaLR 0 626 1 834 281 86 0 chr11 93568100 93568321 -55215151 + MIR SINE MIR 2 241 -21 324 352 81 57 chr11 93568534 93568940 -55214532 - L2 LINE L2 -375 2939 2524 2199 210 21 76 chr11 93568988 93569616 -55213856 + MLT1E2 LTR MaLR 34 626 0 442 295 23 8 chr11 93569633 93569762 -55213710 + L2 LINE L2 3181 3311 -2 298 315 45 0 chr11 93569744 93569833 -55213639 - MIR SINE MIR -121 141 49 * 183 279 56 75 chr11 93570209 93570370 -55213102 + L2 LINE L2 2817 2974 -298 318 261 76 11 chr11 93570676 93570768 -55212704 + MIR SINE MIR 31 128 -134 645 128 0 0 chr11 93570768 93570862 -55212610 + AluJ/FLAM SINE Alu 1 94 -218 296 276 69 17 chr11 93570963 93571079 -55212393 + MIR SINE MIR 141 262 0 1830 166 7 7 chr11 93571092 93571387 -55212085 - AluJb SINE Alu -17 295 1 205 286 0 48 chr11 93571424 93571487 -55211985 + L2 LINE L2 3246 3305 -8 24 32 0 0 chr11 93571848 93571879 -55211593 + AT_rich Low_complexity Low_complexity 1 31 0 799 100 0 54 chr11 93571885 93571906 -55211566 - L1PA16 LINE L1 -16 6150 6129 1604 146 101 51 chr11 93571906 93572262 -55211210 + THE1C LTR MaLR 2 375 0 799 100 0 54 chr11 93572262 93572370 -55211102 - L1PA16 LINE L1 -37 6129 6028 25 31 0 0 chr11 93573412 93573444 -55210028 + AT_rich Low_complexity Low_complexity 1 32 0 180 0 0 0 chr11 93573817 93573837 -55209635 + (TAAAAA)n Simple_repeat Simple_repeat 5 24 0 417 318 82 10 chr11 93574341 93574536 -55208936 + MIR SINE MIR 53 261 -1 30 0 0 0 chr11 93574613 93574643 -55208829 + AT_rich Low_complexity Low_complexity 1 30 0 1863 261 157 39 chr11 93574917 93575423 -55208049 - HAL1 LINE L1 -110 2397 1952 1618 196 45 11 chr11 93575423 93575800 -55207672 + MLT1B LTR MaLR 1 390 0 1863 261 157 39 chr11 93575800 93576083 -55207389 - HAL1 LINE L1 -555 1952 1704 243 61 0 0 chr11 93576083 93576116 -55207356 + (CA)n Simple_repeat Simple_repeat 1 33 0 1863 261 157 39 chr11 93576116 93576777 -55206695 - HAL1 LINE L1 -803 1704 775 295 321 36 9 chr11 93576956 93577068 -55206404 - HAL1 LINE L1 -2054 453 339 721 208 119 20 chr11 93577211 93577413 -55206059 - L1ME2 LINE L1 -244 5903 5682 1376 226 48 31 chr11 93577424 93577907 -55205565 - L1ME2 LINE L1 -1232 4897 4407 303 283 136 15 chr11 93578012 93578277 -55205195 - L1ME2 LINE L1 -3612 2517 2221 976 235 138 72 chr11 93578304 93578790 -55204682 + MLT1F LTR MaLR 25 542 0 367 311 72 54 chr11 93578791 93579219 -55204253 - L1ME2 LINE L1 -3918 2211 1776 1897 151 0 3 chr11 93579242 93579540 -55203932 - AluSx SINE Alu -15 297 1 655 322 104 13 chr11 93579628 93580563 -55202909 - L1ME2 LINE L1 -4655 1655 594 381 375 31 54 chr11 93580762 93581111 -55202361 - L1ME2 LINE L1 -5735 384 44 355 261 23 0 chr11 93581292 93581380 -55202092 + L1MC4 LINE L1 6614 6703 -1339 360 176 0 0 chr11 93581380 93581448 -55202024 + (TA)n Simple_repeat Simple_repeat 2 69 0 21 36 0 0 chr11 93581542 93581570 -55201902 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 93582107 93582128 -55201344 + AT_rich Low_complexity Low_complexity 1 21 0 255 355 62 38 chr11 93582275 93582486 -55200986 - MIR SINE MIR -13 249 34 690 275 82 25 chr11 93582530 93582774 -55200698 + MIR SINE MIR 4 261 -1 1793 92 4 0 chr11 93582914 93583164 -55200308 + L1P LINE L1 2451 2701 -3445 361 52 0 35 chr11 93583381 93583439 -55200033 + (TG)n Simple_repeat Simple_repeat 1 56 0 189 250 329 0 chr11 93584704 93584780 -55198692 - MIR3 SINE MIR -48 160 60 1472 193 158 14 chr11 93585663 93586094 -55197378 + MER50 LTR ERV1 240 732 -2 505 218 64 48 chr11 93586406 93586532 -55196940 + L1ME2 LINE L1 5797 5935 -229 749 211 0 0 chr11 93586532 93586665 -55196807 + FLAM_A SINE Alu 1 133 0 505 218 64 48 chr11 93586665 93586724 -55196748 + L1ME2 LINE L1 5935 5992 -172 483 307 62 22 chr11 93587604 93588008 -55195464 - L1MEc LINE L1 -3952 2444 2025 2799 173 47 36 chr11 93588111 93588829 -55194643 - L1MA8 LINE L1 -4 6287 5524 419 230 218 52 chr11 93588901 93589075 -55194397 + LTR50 LTR ERVL 82 284 -511 765 250 116 3 chr11 93589116 93589408 -55194064 + LTR50 LTR ERVL 471 795 0 2029 161 13 0 chr11 93589674 93589984 -55193488 - MER1B DNA MER1_type 0 339 26 1712 216 31 6 chr11 93590362 93590713 -55192759 + MLT1A1 LTR MaLR 3 362 -3 1642 171 13 23 chr11 93590829 93591128 -55192344 + MLT2D LTR ERVL 3 298 -116 280 235 47 0 chr11 93591133 93591218 -55192254 + L1MC4 LINE L1 6615 6703 -1339 192 245 0 0 chr11 93591221 93591274 -55192198 + (TA)n Simple_repeat Simple_repeat 2 54 0 * 360 64 0 0 chr11 93591265 93591312 -55192160 + (TG)n Simple_repeat Simple_repeat 2 48 0 205 323 31 0 chr11 93591402 93591467 -55192005 + L2 LINE L2 3246 3312 -1 255 263 0 0 chr11 93591569 93591627 -55191845 + (TG)n Simple_repeat Simple_repeat 1 58 0 1615 223 19 78 chr11 93592998 93593424 -55190048 + MLT1C-int LTR MaLR 971 1371 0 1438 230 93 21 chr11 93593429 93593860 -55189612 + MLT1C LTR MaLR 6 467 0 1162 251 31 24 chr11 93593870 93594292 -55189180 - L1ME LINE L1 -477 5689 5265 5252 159 16 0 chr11 93594355 93595271 -55188201 - L1PA16 LINE L1 -21 6145 5217 17892 142 14 93 chr11 93595282 93599156 -55184316 + L1PA7 LINE L1 12 3578 -2568 7746 69 1 0 chr11 93599155 93600198 -55183274 - L1PA5 LINE L1 -2233 3913 2870 * 11681 46 10 2 chr11 93600198 93602436 -55181036 + L1PA5 LINE L1 3909 6153 -1 12158 106 11 2 chr11 93602465 93605036 -55178436 + L1PA7 LINE L1 3561 6141 -13 2539 216 6 96 chr11 93605051 93605950 -55177522 - L1 LINE L1 -918 5228 4411 492 262 133 13 chr11 93607022 93607255 -55176217 - L1 LINE L1 -1646 4500 4240 1964 147 3 10 chr11 93607255 93607567 -55175905 - AluSx SINE Alu -2 310 1 242 122 0 0 chr11 93607581 93607622 -55175850 - L1MA2 LINE L1 -188 6116 6076 740 224 12 27 chr11 93607622 93607881 -55175591 - L1 LINE L1 -3059 3087 2833 457 260 30 18 chr11 93607900 93608069 -55175403 - L1 LINE L1 -3523 2623 2453 482 335 212 27 chr11 93608087 93608791 -55174681 + L2 LINE L2 2070 2903 -411 232 369 180 0 chr11 93609041 93609152 -55174320 + L2 LINE L2 3134 3264 -8 1227 231 67 58 chr11 93609919 93610434 -55173038 + MER39 LTR ERV1 1 702 -5 910 335 72 13 chr11 93610925 93611394 -55172078 + ERVL LTR ERVL 2084 2580 -3184 23 0 0 0 chr11 93611508 93611531 -55171941 + AT_rich Low_complexity Low_complexity 1 23 0 24992 76 8 9 chr11 93611534 93615799 -55167673 - L1PA6 LINE L1 -16 6138 1882 1060 312 58 33 chr11 93616157 93616762 -55166710 + ERVL LTR ERVL 4747 5366 -398 337 293 50 14 chr11 93617222 93617362 -55166110 + LTR16C LTR ERVL 344 488 -3 198 337 24 12 chr11 93617398 93617481 -55165991 - MIR SINE MIR -158 104 21 300 276 106 8 chr11 93617742 93617865 -55165607 - MIR3 SINE MIR -7 201 67 304 379 135 14 chr11 93618763 93619051 -55164421 - L2 LINE L2 -77 3195 2873 1448 191 45 98 chr11 93619052 93619216 -55164256 + MSTD LTR MaLR 1 172 -224 2457 133 41 7 chr11 93619216 93619630 -55163842 - MSTA LTR MaLR 0 428 1 1448 191 45 98 chr11 93619630 93619883 -55163589 + MSTD LTR MaLR 172 396 0 585 273 84 64 chr11 93621050 93621347 -55162125 - L1ME3A LINE L1 -261 5903 5601 257 315 130 0 chr11 93621579 93621687 -55161785 + MIR SINE MIR 126 247 -15 4960 163 25 3 chr11 93622466 93623313 -55160159 + MER6 DNA MER2_type 1 865 0 339 309 51 34 chr11 93623426 93623604 -55159868 - L2 LINE L2 -12 3301 3121 188 216 0 0 chr11 93623945 93623982 -55159490 + L2 LINE L2 3219 3255 -17 675 267 32 53 chr11 93624040 93624287 -55159185 - MIR SINE MIR -15 247 6 358 315 119 7 chr11 93624340 93624483 -55158989 - MIR SINE MIR -84 178 20 184 404 61 18 chr11 93625574 93625688 -55157784 - L2 LINE L2 -16 3256 3138 2094 132 14 0 chr11 93626099 93626394 -55157078 + AluSx SINE Alu 1 299 -13 292 320 46 71 chr11 93627234 93627392 -55156080 + L2 LINE L2 2578 2727 -587 1967 151 48 31 chr11 93627392 93627750 -55155722 - THE1B LTR MaLR 0 364 1 292 320 46 71 chr11 93627750 93627872 -55155600 + L2 LINE L2 2727 2851 -463 604 257 50 15 chr11 93628089 93628291 -55155181 - L2 LINE L2 0 3313 3105 191 273 39 65 chr11 93629005 93629082 -55154390 + MIR SINE MIR 71 145 -63 206 281 115 0 chr11 93629907 93630003 -55153469 + MIR SINE MIR 156 262 0 642 184 57 0 chr11 93630430 93630571 -55152901 + MER97a DNA MER1_type? 28 176 -718 3069 138 81 10 chr11 93630571 93631164 -55152308 + LTR24C LTR ERV1 1 635 0 250 250 24 0 chr11 93631980 93632064 -55151408 + L1ME4a LINE L1 5969 6054 -67 1132 173 72 5 chr11 93632108 93632316 -55151156 + AluJb SINE Alu 89 310 -2 38853 68 4 3 chr11 93632376 93638514 -55144958 + L1PA5 LINE L1 1 6149 -5 212 299 65 32 chr11 93639436 93639590 -55143882 + MIR SINE MIR 104 262 0 301 236 160 49 chr11 93639596 93639740 -55143732 + MER5B DNA MER1_type 1 160 -18 201 74 0 0 chr11 93639796 93639823 -55143649 + (TC)n Simple_repeat Simple_repeat 2 28 0 2336 97 0 0 chr11 93641490 93641799 -55141673 + AluY SINE Alu 1 309 -2 657 148 20 0 chr11 93642918 93643019 -55140453 - FLAM_C SINE Alu -32 111 9 4013 203 28 11 chr11 93643027 93644788 -55138684 - L1 LINE L1 -3199 3649 1860 592 158 0 70 chr11 93644790 93644904 -55138568 - U6 snRNA snRNA 0 107 2 1098 268 54 16 chr11 93644905 93646266 -55137206 + L1ME2 LINE L1 4086 5547 -615 2178 118 67 14 chr11 93646267 93646613 -55136859 - THE1B LTR MaLR 0 364 1 11625 99 9 1 chr11 93646613 93648180 -55135292 - THE1B-int LTR MaLR 0 1580 1 1875 127 49 32 chr11 93648188 93648534 -55134938 - THE1B LTR MaLR -12 352 1 635 177 7 156 chr11 93648534 93648822 -55134650 + L1ME2 LINE L1 5544 5788 -376 41413 44 1 2 chr11 93648866 93655024 -55128448 - L1PA3 LINE L1 -1 6154 4 751 285 75 6 chr11 93655025 93655386 -55128086 + L1ME2 LINE L1 5779 6164 0 1053 288 149 17 chr11 93655869 93656522 -55126950 - L2 LINE L2 0 3313 2575 800 181 122 11 chr11 93657366 93657554 -55125918 - MER63A DNA MER1_type -1 209 1 747 286 13 9 chr11 93658878 93659102 -55124370 - MIR SINE MIR -25 237 13 279 261 0 0 chr11 93659273 93659342 -55124130 + (TTTA)n Simple_repeat Simple_repeat 3 71 0 286 302 62 16 chr11 93659343 93659472 -55124000 - MIR SINE MIR -7 255 121 1904 153 64 0 chr11 93660587 93660914 -55122558 + MER7A DNA MER2_type 1 346 0 2162 134 0 0 chr11 93661228 93661527 -55121945 + AluSg SINE Alu 1 299 -11 2387 154 31 17 chr11 93661714 93662136 -55121336 - MSTA LTR MaLR 0 428 1 746 304 102 59 chr11 93662739 93663256 -55120216 - L2 LINE L2 0 3313 2783 245 292 0 0 chr11 93663356 93663421 -55120051 + L2 LINE L2 3206 3270 -2 1007 174 32 5 chr11 93664227 93664445 -55119027 - MER67C LTR ERV1 0 710 487 722 230 35 15 chr11 93664450 93664650 -55118822 - MER67C LTR ERV1 -348 362 159 267 336 104 0 chr11 93665044 93665169 -55118303 + MIR SINE MIR 19 156 -106 180 0 0 0 chr11 93666279 93666299 -55117173 + (A)n Simple_repeat Simple_repeat 1 20 0 355 188 0 25 chr11 93666587 93666667 -55116805 + L1MA8 LINE L1 6028 6105 -186 2183 205 15 15 chr11 93666685 93667158 -55116314 - MER54A LTR ERVL -35 866 394 535 160 83 7 chr11 93667158 93667302 -55116170 + L1MA8 LINE L1 6134 6288 -3 311 191 11 11 chr11 93667340 93667429 -55116043 + L1ME1 LINE L1 2311 2399 -3997 2104 189 34 7 chr11 93667440 93667880 -55115592 - MSTB2 LTR MaLR 0 457 6 4312 278 107 19 chr11 93667885 93668293 -55115179 - MLT-int LTR MaLR 0 1735 1364 3955 104 47 29 chr11 93668293 93668917 -55114555 - MER41B LTR ERV1 0 635 1 4312 278 107 19 chr11 93668917 93670103 -55113369 - MLT-int LTR MaLR -371 1364 2 1434 191 68 104 chr11 93670108 93670578 -55112894 - MSTB2 LTR MaLR -3 454 2 4437 259 71 37 chr11 93670589 93671220 -55112252 + L1ME1 LINE L1 2385 2993 -3242 240 35 0 0 chr11 93671220 93671249 -55112223 + (TAAAA)n Simple_repeat Simple_repeat 1 29 0 4437 259 71 37 chr11 93671249 93673179 -55110293 + L1ME1 LINE L1 2993 5059 -1176 2072 117 14 3 chr11 93673179 93673470 -55110002 + AluSc SINE Alu 1 294 -15 4437 259 71 37 chr11 93673470 93674425 -55109047 + L1ME1 LINE L1 5059 5980 -255 462 279 46 32 chr11 93674438 93674626 -55108846 + L1MA10 LINE L1 5983 6331 -3 210 118 0 0 chr11 93674627 93674661 -55108811 + (GA)n Simple_repeat Simple_repeat 1 34 0 24 53 0 0 chr11 93676538 93676576 -55106896 + AT_rich Low_complexity Low_complexity 1 38 0 602 305 66 46 chr11 93676715 93677325 -55106147 + L1MC4a LINE L1 5313 5934 -1874 473 257 103 23 chr11 93677560 93677735 -55105737 - MIR SINE MIR -3 259 71 294 295 93 0 chr11 93678029 93678168 -55105304 + L1MEc LINE L1 167 318 -6078 687 274 77 52 chr11 93678648 93679269 -55104203 + L1MEc LINE L1 786 1422 -4974 4353 133 31 3 chr11 93679282 93679995 -55103477 + L1PA16 LINE L1 5425 6157 -9 2449 267 47 52 chr11 93680032 93681784 -55101688 + L1M4 LINE L1 3112 4944 -1202 190 275 187 11 chr11 93681907 93681998 -55101474 + MIR SINE MIR 48 154 -108 561 199 14 23 chr11 93683221 93683441 -55100031 + CT-rich Low_complexity Low_complexity 1 218 0 197 200 24 106 chr11 93683518 93683603 -55099869 + L3 LINE CR1 1185 1262 -315 334 286 114 48 chr11 93683813 93684103 -55099369 + L2 LINE L2 3005 3313 0 192 310 70 0 chr11 93684667 93684738 -55098734 - MIR SINE MIR -119 143 68 521 368 11 0 chr11 93684835 93685020 -55098452 - L3 LINE CR1 -7 1570 1384 576 271 16 8 chr11 93685481 93685610 -55097862 - L2 LINE L2 -6 3266 3137 363 275 208 3 chr11 93687225 93687435 -55096037 - MIR SINE MIR -18 244 3 243 154 269 0 chr11 93688506 93688584 -55094888 + MIR SINE MIR 116 214 -48 282 116 47 23 chr11 93689288 93689374 -55094098 + (TA)n Simple_repeat Simple_repeat 2 89 0 1817 184 18 18 chr11 93689888 93690284 -55093188 + L1MB3 LINE L1 4369 4764 -1382 632 225 5 52 chr11 93690275 93690466 -55093006 + L1MB3 LINE L1 5872 6053 -130 * 2181 96 0 0 chr11 93690781 93691063 -55092409 + AluSx SINE Alu 1 282 -30 537 121 0 0 chr11 93691080 93691163 -55092309 + (TATATG)n Simple_repeat Simple_repeat 2 84 0 374 264 112 24 chr11 93691361 93691486 -55091986 + L2 LINE L2 3137 3272 0 662 181 83 21 chr11 93691692 93691836 -55091636 + MER20 DNA MER1_type 66 218 -1 301 342 84 44 chr11 93692493 93692718 -55090754 + L2 LINE L2 2985 3218 -54 33 0 0 0 chr11 93693057 93693090 -55090382 + AT_rich Low_complexity Low_complexity 1 33 0 590 279 65 28 chr11 93693701 93693916 -55089556 - MIR SINE MIR -32 230 8 233 327 52 45 chr11 93694328 93694658 -55088814 + L1ME LINE L1 5550 5881 -240 424 219 25 17 chr11 93696572 93696691 -55086781 - L1MC4 LINE L1 0 8042 7923 333 0 0 0 chr11 93696694 93696731 -55086741 + (TG)n Simple_repeat Simple_repeat 2 38 0 1014 266 12 0 chr11 93696733 93696977 -55086495 - L1MC4 LINE L1 -1136 6906 6660 231 325 0 0 chr11 93697041 93697118 -55086354 - L1ME2 LINE L1 -13 6151 6075 1354 260 105 17 chr11 93697141 93697809 -55085663 - L1 LINE L1 -1514 4632 3912 547 279 148 57 chr11 93699117 93699414 -55084058 - L2 LINE L2 0 3272 2949 265 348 71 83 chr11 93699434 93699687 -55083785 + L2 LINE L2 3009 3258 -14 3936 130 27 8 chr11 93699930 93700554 -55082918 + MER39B LTR ERV1 1 622 0 714 207 48 24 chr11 93700817 93701025 -55082447 - MER67C LTR ERV1 0 710 498 * 896 229 112 28 chr11 93701022 93701345 -55082127 - MER67C LTR ERV1 -321 389 40 575 227 169 0 chr11 93701673 93701827 -55081645 - MER5A DNA MER1_type 0 189 10 242 157 0 59 chr11 93701941 93701992 -55081480 - L2 LINE L2 0 3313 3266 413 168 0 0 chr11 93703031 93703097 -55080375 - L1M1 LINE L1 -6057 1508 1139 3773 168 19 118 chr11 93703097 93703960 -55079512 - L1M1 LINE L1 -5985 1580 804 * 10339 144 31 5 chr11 93703953 93705678 -55077794 + L1M4c LINE L1 1504 3273 -4292 1437 106 15 0 chr11 93705678 93705876 -55077596 + AluY SINE Alu 100 300 -11 2381 115 29 8 chr11 93705876 93706258 -55077214 + L1M4c LINE L1 3265 3654 -3911 5906 194 21 32 chr11 93706272 93707733 -55075739 + L1M4c LINE L1 3579 5023 -2542 288 0 0 0 chr11 93707733 93707765 -55075707 + (A)n Simple_repeat Simple_repeat 1 32 0 3902 152 61 8 chr11 93707865 93708892 -55074580 + L1MA2 LINE L1 4811 5907 -397 3968 96 5 4 chr11 93708895 93709449 -55074023 + L1P LINE L1 3 557 -5589 4238 189 8 14 chr11 93709554 93710292 -55073180 + L1M4c LINE L1 5018 5752 -1813 427 122 81 0 chr11 93710292 93710366 -55073106 + MADE1 DNA Mariner 1 80 0 4238 189 8 14 chr11 93710366 93710501 -55072971 + L1M4c LINE L1 5752 5886 -1679 2147 141 7 0 chr11 93710572 93710877 -55072595 + AluSx SINE Alu 1 307 -5 305 216 68 34 chr11 93711051 93711139 -55072333 + L1MC4 LINE L1 6613 6703 -1339 467 312 123 55 chr11 93711813 93712210 -55071262 - L2 LINE L2 -449 2865 2442 228 263 12 62 chr11 93712636 93712716 -55070756 + L2 LINE L2 3160 3235 -37 778 229 0 25 chr11 93713419 93713576 -55069896 + MER45A DNA AcHobo 1 153 -25 196 341 82 30 chr11 93713666 93713801 -55069671 - L2 LINE L2 -260 3012 2871 206 408 17 8 chr11 93714162 93714282 -55069190 + MIR3 SINE MIR 87 207 -1 271 342 77 0 chr11 93714330 93714447 -55069025 + L2 LINE L2 3186 3311 -2 223 336 136 9 chr11 93714502 93714612 -55068860 - L2 LINE L2 -10 3262 3139 443 269 153 28 chr11 93714707 93714923 -55068549 + MIR SINE MIR 20 262 0 236 161 0 36 chr11 93714923 93714979 -55068493 + (TTA)n Simple_repeat Simple_repeat 2 55 0 246 310 14 0 chr11 93715011 93715082 -55068390 - L2 LINE L2 -216 3056 2985 396 303 97 17 chr11 93715878 93716053 -55067419 - MIR SINE MIR -54 208 20 1378 266 47 30 chr11 93716098 93716568 -55066904 + HsTC2a DNA Tc2 1 478 -266 445 279 126 5 chr11 93716758 93716948 -55066524 - MIR SINE MIR -3 259 47 307 303 96 46 chr11 93717173 93717391 -55066081 + MIR SINE MIR 5 233 -29 272 304 95 34 chr11 93717654 93717802 -55065670 + MIR SINE MIR 56 212 -50 434 206 54 0 chr11 93717902 93717994 -55065478 + MER63 DNA MER1_type 4 726 -110 183 42 0 0 chr11 93718114 93718138 -55065334 + (CA)n Simple_repeat Simple_repeat 1 24 0 2581 45 33 12 chr11 93718166 93718503 -55064969 - LTR14A LTR ERVK 0 344 1 367 290 111 19 chr11 93719336 93719498 -55063974 - MER5B DNA MER1_type -1 177 1 187 340 0 0 chr11 93719551 93719604 -55063868 + MER5A DNA MER1_type 25 77 -112 * 227 233 100 0 chr11 93719598 93719658 -55063814 - MER5A DNA MER1_type -82 107 42 1730 250 13 28 chr11 93720437 93720897 -55062575 - MLT1D LTR MaLR -2 503 51 417 343 72 0 chr11 93720955 93721136 -55062336 - MIR SINE MIR -55 207 14 248 353 105 20 chr11 93721782 93721935 -55061537 + L2 LINE L2 3107 3272 0 352 335 91 28 chr11 93721952 93722128 -55061344 + MER5A DNA MER1_type 2 188 -1 241 242 65 16 chr11 93723241 93723303 -55060169 - L2 LINE L2 -24 3289 3225 821 221 6 0 chr11 93723308 93723466 -55060006 + FRAM SINE Alu 2 160 -16 358 280 116 26 chr11 93723469 93723658 -55059814 + L2 LINE L2 3108 3313 0 436 260 142 35 chr11 93723878 93724047 -55059425 - MLT1J2 LTR MaLR 0 450 264 272 294 35 0 chr11 93724164 93724249 -55059223 - MLT1J2 LTR MaLR -348 102 15 21 57 0 0 chr11 93724535 93724570 -55058902 + AT_rich Low_complexity Low_complexity 1 35 0 828 24 47 0 chr11 93726074 93726201 -55057271 + (TAGA)n Simple_repeat Simple_repeat 3 135 0 234 91 0 0 chr11 93726210 93726243 -55057229 + (TA)n Simple_repeat Simple_repeat 1 33 0 373 315 85 50 chr11 93726298 93726498 -55056974 + MIR SINE MIR 13 219 -43 386 266 52 73 chr11 93727047 93727239 -55056233 - MIR SINE MIR -71 191 4 439 233 201 6 chr11 93727956 93728115 -55055357 - LTR16B LTR ERVL 0 464 275 351 313 10 0 chr11 93728198 93728297 -55055175 - LTR16B LTR ERVL -357 107 8 909 263 85 27 chr11 93728419 93729087 -55054385 + L1M4 LINE L1 4075 4939 -1207 1216 157 32 32 chr11 93729122 93729403 -55054069 - L1MA7 LINE L1 0 6291 6011 2443 157 26 52 chr11 93729408 93729794 -55053678 - L1MA7 LINE L1 -557 5734 5359 1610 32 0 0 chr11 93729794 93729983 -55053489 - L1PA5 LINE L1 -9 6145 5957 2443 157 26 52 chr11 93729983 93730169 -55053303 - L1MA7 LINE L1 -932 5359 5170 267 311 78 0 chr11 93730218 93730411 -55053061 + L1M4 LINE L1 4971 5178 -968 12957 54 10 8 chr11 93730518 93732254 -55051218 - L1P LINE L1 -3893 2253 2 338 260 93 7 chr11 93732260 93732410 -55051062 + L1PBa LINE L1 303 465 -6398 187 310 126 11 chr11 93732931 93733018 -55050454 - L2 LINE L2 -173 3099 3003 377 248 26 8 chr11 93733035 93733152 -55050320 - L1ME4a LINE L1 -3 6118 6000 42 71 0 0 chr11 93733190 93733274 -55050198 + AT_rich Low_complexity Low_complexity 1 84 0 545 261 42 7 chr11 93733343 93733485 -55049987 - L2 LINE L2 -4 3309 3163 321 309 77 34 chr11 93733633 93733649 -55049823 - L1ME LINE L1 -576 5545 5531 1282 195 34 63 chr11 93733649 93733998 -55049474 + MER44D DNA MER2_type 1 609 0 321 309 77 34 chr11 93733998 93734188 -55049284 - L1ME LINE L1 -590 5531 5330 190 291 0 0 chr11 93734215 93734270 -55049202 - L2 LINE L2 -298 2974 2920 252 372 16 16 chr11 93734545 93734666 -55048806 + MLT1I LTR MaLR 156 276 -133 953 177 86 0 chr11 93735585 93735760 -55047712 + L1PA16 LINE L1 5968 6157 -9 226 143 54 0 chr11 93735899 93735955 -55047517 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 273 280 91 91 chr11 93736030 93736117 -55047355 - MER112 DNA MER1_type 0 260 174 270 0 0 0 chr11 93736117 93736147 -55047325 + (CA)n Simple_repeat Simple_repeat 1 30 0 273 280 91 91 chr11 93736147 93736234 -55047238 - MER112 DNA MER1_type -85 175 86 21 0 0 0 chr11 93736320 93736341 -55047131 + AT_rich Low_complexity Low_complexity 1 21 0 11552 31 5 0 chr11 93736966 93739153 -55044319 + L1PA4 LINE L1 3963 6152 -3 551 255 90 32 chr11 93739464 93739673 -55043799 + MIR SINE MIR 38 248 -14 317 313 43 0 chr11 93739798 93739913 -55043559 + MIR3 SINE MIR 87 206 -2 565 199 13 93 chr11 93741205 93741356 -55042116 + Tigger1 DNA MER2_type 1 139 -2279 * 1089 159 58 0 chr11 93741352 93741559 -55041913 + Tigger1 DNA MER2_type 2200 2418 0 182 323 42 21 chr11 93742006 93742102 -55041370 + L2 LINE L2 3216 3313 0 24 32 0 0 chr11 93742237 93742268 -55041204 + AT_rich Low_complexity Low_complexity 1 31 0 376 261 261 0 chr11 93743228 93743370 -55040102 + MER5A DNA MER1_type 10 188 -1 1210 242 81 31 chr11 93744023 93744444 -55039028 + L1MD1 LINE L1 3901 4342 -1804 2349 189 52 65 chr11 93744451 93745355 -55038117 + L1MD1 LINE L1 4556 5441 -743 1584 154 82 6 chr11 93745355 93745681 -55037791 + L1MD1 LINE L1 5872 6227 -15 22 0 0 0 chr11 93745681 93745703 -55037769 + AT_rich Low_complexity Low_complexity 1 22 0 360 264 146 77 chr11 93746135 93746499 -55036973 + LTR50 LTR ERVL 127 787 -8 411 319 151 57 chr11 93747496 93747966 -55035506 - MLT1K LTR MaLR -64 524 11 498 305 71 0 chr11 93748614 93748896 -55034576 + L1ME3A LINE L1 4971 5272 -874 348 229 0 0 chr11 93748896 93748979 -55034493 + (CATATA)n Simple_repeat Simple_repeat 3 85 0 5096 194 36 23 chr11 93749048 93750552 -55032920 + L1MC2 LINE L1 4810 6330 -14 1301 280 196 27 chr11 93750555 93751208 -55032264 + L1ME3A LINE L1 5304 6052 -118 30 27 0 0 chr11 93751258 93751295 -55032177 + AT_rich Low_complexity Low_complexity 1 37 0 525 302 62 13 chr11 93753373 93753598 -55029874 + MIR SINE MIR 2 237 -25 454 282 135 38 chr11 93753763 93754082 -55029390 - LTR16A1 LTR ERVL -95 362 13 432 37 0 0 chr11 93754216 93754270 -55029202 + (TC)n Simple_repeat Simple_repeat 1 54 0 2631 142 21 2 chr11 93754340 93754762 -55028710 - MSTB1 LTR MaLR 0 432 3 685 353 9 0 chr11 93754920 93755144 -55028328 + MIR SINE MIR 34 259 -3 952 334 10 3 chr11 93755665 93755979 -55027493 - MLT2E LTR ERVL -312 316 1 223 273 0 30 chr11 93756153 93756219 -55027253 + L2 LINE L2 3249 3312 -1 227 127 63 0 chr11 93757102 93757165 -55026307 + CT-rich Low_complexity Low_complexity 3 69 0 1709 215 59 36 chr11 93757185 93757679 -55025793 - MLT1D LTR MaLR 0 505 1 407 279 119 11 chr11 93758111 93758285 -55025187 + MIR3 SINE MIR 12 203 -59 28 38 0 19 chr11 93758485 93758524 -55024948 + AT_rich Low_complexity Low_complexity 1 40 -12 216 97 0 0 chr11 93758524 93758555 -55024917 + (TATAG)n Simple_repeat Simple_repeat 5 35 0 28 38 0 19 chr11 93758555 93758568 -55024904 + AT_rich Low_complexity Low_complexity 40 52 0 398 297 70 42 chr11 93759458 93759705 -55023767 - MIR SINE MIR -6 256 8 268 344 81 31 chr11 93759730 93759890 -55023582 - L2 LINE L2 0 3272 3105 560 133 0 41 chr11 93759965 93760063 -55023409 - HSMAR2 DNA Mariner -54 1248 1155 5461 87 12 1 chr11 93760161 93760936 -55022536 - L1PA13 LINE L1 -2 6161 5379 5864 151 32 5 chr11 93760936 93761926 -55021546 - HSMAR2 DNA Mariner -146 1156 140 24 0 0 0 chr11 93762030 93762054 -55021418 + AT_rich Low_complexity Low_complexity 1 24 0 879 291 57 37 chr11 93762779 93763239 -55020233 + MLT1K LTR MaLR 119 587 -1 21 0 0 0 chr11 93763280 93763301 -55020171 + AT_rich Low_complexity Low_complexity 1 21 0 28 86 0 0 chr11 93763636 93763706 -55019766 + AT_rich Low_complexity Low_complexity 1 70 0 284 216 18 36 chr11 93763797 93763908 -55019564 + T-rich Low_complexity Low_complexity 2 110 0 21 0 0 0 chr11 93764167 93764188 -55019284 + AT_rich Low_complexity Low_complexity 1 21 0 7373 44 0 4 chr11 93764592 93765976 -55017496 + L1PA5 LINE L1 4774 6154 0 312 75 0 38 chr11 93766068 93766149 -55017323 + L1PA8 LINE L1 6122 6200 0 801 321 91 12 chr11 93766335 93766740 -55016732 - MLT1J2 LTR MaLR -13 437 1 2298 85 0 3 chr11 93767741 93768035 -55015437 + AluY SINE Alu 1 293 -18 1049 230 121 107 chr11 93768613 93769109 -55014363 + MLT1D LTR MaLR 3 505 0 1459 209 61 33 chr11 93769266 93769629 -55013843 - MLT1A2 LTR MaLR 0 374 2 425 250 42 102 chr11 93770551 93770787 -55012685 + MER39 LTR ERV1 250 471 -236 1318 229 14 7 chr11 93770969 93771262 -55012210 - L1MDa LINE L1 -6245 295 1 354 45 0 0 chr11 93771642 93771686 -55011786 + (CA)n Simple_repeat Simple_repeat 2 45 0 1438 147 0 135 chr11 93771848 93772181 -55011291 + AluJb SINE Alu 1 288 -14 567 171 83 37 chr11 93772183 93772399 -55011073 + L1M4 LINE L1 3038 3263 -2883 236 254 28 0 chr11 93772830 93772901 -55010571 + L1MC4 LINE L1 6624 6696 -1346 180 111 0 0 chr11 93772905 93772932 -55010540 + (GA)n Simple_repeat Simple_repeat 2 28 0 1825 141 44 0 chr11 93772934 93773204 -55010268 - AluSx SINE Alu -30 282 1 198 275 69 99 chr11 93773265 93773396 -55010076 - L2 LINE L2 -10 3262 3136 11420 35 2 0 chr11 93773784 93775188 -55008284 - L1P LINE L1 -2299 3847 2441 2075 117 3 3 chr11 93975285 93975607 -54807865 - AluSq SINE Alu 0 324 3 226 245 0 0 chr11 93977094 93977143 -54806329 + Charlie8 DNA MER1_type 2344 2392 -25 3699 186 14 32 chr11 93977420 93977491 -54805981 - L1PB4 LINE L1 -2 7592 7521 4961 110 1 4 chr11 93977491 93978184 -54805288 + LTR8 LTR ERV1 1 691 0 3699 186 14 32 chr11 93978184 93978368 -54805104 - L1PB4 LINE L1 -73 7521 7335 1483 161 88 0 chr11 93978368 93978629 -54804843 - AluSx SINE Alu -12 300 17 3699 186 14 32 chr11 93978629 93979187 -54804285 - L1PB4 LINE L1 -259 7335 6793 2738 171 15 42 chr11 93979968 93980493 -54802979 - MLT2B2 LTR ERVL 0 515 5 390 302 84 69 chr11 93980559 93980761 -54802711 - MIR SINE MIR -44 218 14 300 27 0 0 chr11 93981386 93981423 -54802049 + (TG)n Simple_repeat Simple_repeat 2 38 0 300 120 0 0 chr11 93981731 93981781 -54801691 + (TTTA)n Simple_repeat Simple_repeat 1 50 0 257 224 45 0 chr11 93981960 93982027 -54801445 - L1ME LINE L1 -262 5859 5790 370 300 104 47 chr11 93982045 93982176 -54801296 - L1ME LINE L1 -390 5731 5609 2764 84 0 0 chr11 93982176 93982531 -54800941 - THE1A LTR MaLR 0 355 1 11276 109 4 2 chr11 93982531 93984107 -54799365 - THE1A-int LTR MaLR 0 1580 1 2342 101 6 41 chr11 93984107 93984473 -54798999 - THE1A LTR MaLR 0 355 3 370 300 104 47 chr11 93984473 93984805 -54798667 - L1ME LINE L1 -511 5610 5255 277 339 59 25 chr11 93985829 93985947 -54797525 - MIR3 SINE MIR -73 135 14 1513 283 63 20 chr11 93986069 93986578 -54796894 - MER34 LTR ERV1 0 542 12 413 209 9 0 chr11 93986807 93986881 -54796591 + (TA)n Simple_repeat Simple_repeat 2 79 -38 1408 193 12 109 chr11 93986881 93987285 -54796187 - MLT1A1 LTR MaLR 0 365 1 413 209 9 0 chr11 93987285 93987325 -54796147 + (TA)n Simple_repeat Simple_repeat 79 117 0 462 162 0 81 chr11 93987396 93987495 -54795977 - FRAM SINE Alu -24 152 62 16372 230 48 20 chr11 93987496 93993433 -54790039 - L1PB4 LINE L1 -853 6731 1 841 164 27 0 chr11 93993439 93993585 -54789887 + Tigger3(Golem) DNA MER2_type 2791 2940 -89 1092 146 81 29 chr11 93994346 93994424 -54789048 - Tigger7 DNA MER2_type 0 2587 2515 358 36 36 0 chr11 93994424 93994480 -54788992 + (TA)n Simple_repeat Simple_repeat 1 58 0 1092 146 81 29 chr11 93994480 93994647 -54788825 - Tigger7 DNA MER2_type -72 2515 2329 524 225 107 35 chr11 93995309 93995478 -54787994 + MIR SINE MIR 82 262 0 634 212 0 0 chr11 93995611 93995743 -54787729 - FLAM_A SINE Alu -1 132 1 761 265 75 26 chr11 93995856 93996114 -54787358 + MIR SINE MIR 1 262 0 476 327 19 23 chr11 93996307 93996521 -54786951 + MIR SINE MIR 47 259 -3 195 204 41 20 chr11 93996854 93996903 -54786569 + MER5B DNA MER1_type 74 123 -55 491 271 78 20 chr11 93996946 93997190 -54786282 + L1ME3A LINE L1 5683 5940 -230 497 283 26 71 chr11 93997819 93998088 -54785384 - MIR SINE MIR -2 260 4 723 154 24 0 chr11 93999346 93999469 -54784003 - THE1B LTR MaLR 0 364 239 2460 96 38 11 chr11 93999469 93999835 -54783637 + THE1C-int LTR MaLR 1205 1580 0 1744 137 54 29 chr11 93999837 94000151 -54783321 + THE1C LTR MaLR 3 324 -51 2541 68 0 0 chr11 94001028 94001337 -54782135 + AluY SINE Alu 1 309 -2 204 146 24 0 chr11 94002310 94002351 -54781121 + T-rich Low_complexity Low_complexity 3 44 0 809 318 120 5 chr11 94003079 94003528 -54779944 - L2 LINE L2 -19 3294 2801 272 193 167 88 chr11 94003533 94003647 -54779825 + MER63 DNA MER1_type 2 750 -312 227 175 0 0 chr11 94003648 94003688 -54779784 + MER63 DNA MER1_type 976 1015 -45 287 327 95 12 chr11 94004370 94004538 -54778934 - L2 LINE L2 -261 3011 2830 283 277 62 0 chr11 94004554 94004619 -54778853 - MER91A DNA MER1_type 0 196 128 353 313 23 0 chr11 94004909 94005037 -54778435 + MIR SINE MIR 127 257 -5 583 274 20 7 chr11 94005046 94005199 -54778273 - L2 LINE L2 -598 2716 2562 750 224 77 80 chr11 94005234 94005524 -54777948 - L1MC5 LINE L1 -201 7760 7471 360 0 0 0 chr11 94005524 94005564 -54777908 + (CA)n Simple_repeat Simple_repeat 2 41 0 750 224 77 80 chr11 94005564 94005783 -54777689 - L1MC5 LINE L1 -490 7471 7253 229 279 96 87 chr11 94005921 94006391 -54777081 - HAL1b LINE L1 -808 540 67 334 354 14 41 chr11 94007511 94007658 -54775814 - MIR SINE MIR -110 152 10 24 77 0 0 chr11 94008578 94008630 -54774842 + AT_rich Low_complexity Low_complexity 1 52 0 894 356 97 32 chr11 94009437 94009897 -54773575 + L2 LINE L2 2286 2813 -500 747 196 22 0 chr11 94009897 94010081 -54773391 + MER53 DNA DNA 2 189 0 894 356 97 32 chr11 94010081 94010354 -54773118 + L2 LINE L2 2813 3067 -246 2280 195 36 6 chr11 94010648 94011120 -54772352 + MER66B LTR ERV1 1 486 0 32 0 0 0 chr11 94012856 94012888 -54770584 + AT_rich Low_complexity Low_complexity 1 32 0 369 324 138 9 chr11 94012976 94013186 -54770286 + MIR SINE MIR 20 256 -6 222 376 0 88 chr11 94013983 94014209 -54769263 + L2 LINE L2 3042 3247 -25 452 172 50 0 chr11 94014481 94014580 -54768892 - L1MA3 LINE L1 0 6305 6202 262 62 0 42 chr11 94014574 94014622 -54768850 + L1MA2 LINE L1 6036 6081 -223 * 1969 223 0 0 chr11 94014626 94015061 -54768411 - L1 LINE L1 -848 6717 6283 * 6121 210 117 11 chr11 94015056 94016438 -54767034 - L1 LINE L1 -6017 1548 20 2173 88 0 3 chr11 94016449 94016767 -54766705 - AluY SINE Alu 0 317 1 244 259 106 12 chr11 94019089 94019174 -54764298 - L2 LINE L2 -1 3271 3179 212 333 51 26 chr11 94019795 94019912 -54763560 + MIR3 SINE MIR 87 206 -2 2447 80 0 0 chr11 94021125 94021426 -54762046 + AluY SINE Alu 1 301 -10 424 261 58 22 chr11 94021521 94021659 -54761813 + MER5A DNA MER1_type 44 186 -3 249 299 92 54 chr11 94022165 94022233 -54761239 - L2 LINE L2 -5 3308 3244 968 212 9 44 chr11 94022233 94022459 -54761013 + MER20 DNA MER1_type 2 219 0 249 299 92 54 chr11 94022459 94022574 -54760898 - L2 LINE L2 -69 3244 3118 1312 180 12 17 chr11 94022857 94023177 -54760295 - MLT1A1 LTR MaLR 0 365 1 432 366 59 11 chr11 94023506 94023779 -54759693 + MLT1K LTR MaLR 205 490 -98 281 320 50 10 chr11 94023996 94024096 -54759376 - MIR SINE MIR -158 104 1 731 264 92 4 chr11 94024275 94024502 -54758970 - MIR SINE MIR -14 248 2 290 202 0 11 chr11 94024855 94024944 -54758528 + (TA)n Simple_repeat Simple_repeat 1 88 0 22 88 0 0 chr11 94025164 94025221 -54758251 + AT_rich Low_complexity Low_complexity 1 57 0 361 292 54 88 chr11 94025349 94025702 -54757770 + L1MC4a LINE L1 5589 5929 -1879 1469 195 0 34 chr11 94026755 94027047 -54756425 + AluJb SINE Alu 1 282 -30 315 85 0 0 chr11 94027059 94027106 -54756366 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 243 204 0 0 chr11 94027106 94027160 -54756312 + (TA)n Simple_repeat Simple_repeat 2 55 0 186 118 0 0 chr11 94027227 94027261 -54756211 + (GA)n Simple_repeat Simple_repeat 2 35 0 257 363 49 0 chr11 94027410 94027512 -54755960 + L2 LINE L2 3154 3260 -12 21 0 0 0 chr11 94027535 94027556 -54755916 + AT_rich Low_complexity Low_complexity 1 21 0 240 233 55 0 chr11 94027611 94027684 -54755788 + MLT1I LTR MaLR 94 170 -379 389 248 0 34 chr11 94027808 94027925 -54755547 + MLT1I LTR MaLR 278 390 -19 214 164 57 31 chr11 94028037 94028142 -54755330 + (TA)n Simple_repeat Simple_repeat 2 114 -50 1797 175 20 6 chr11 94028142 94028484 -54754988 + MER7A DNA MER2_type 2 346 0 214 164 57 31 chr11 94028484 94028537 -54754935 + (TA)n Simple_repeat Simple_repeat 114 164 0 22 70 0 0 chr11 94028539 94028582 -54754890 + AT_rich Low_complexity Low_complexity 1 43 0 21 71 0 0 chr11 94028791 94028833 -54754639 + AT_rich Low_complexity Low_complexity 1 42 0 2140 114 10 7 chr11 94028853 94029159 -54754313 - AluSx SINE Alu -5 307 1 216 350 40 30 chr11 94029170 94029270 -54754202 - L2 LINE L2 -1 3271 3171 433 336 94 8 chr11 94029574 94029809 -54753663 + MIR SINE MIR 8 262 0 485 284 140 36 chr11 94030995 94031245 -54752227 - MLT1L LTR MaLR -301 314 39 189 0 0 0 chr11 94031283 94031304 -54752168 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 826 296 40 47 chr11 94032153 94032339 -54751133 - L1M4 LINE L1 -1044 5102 4916 2138 125 73 14 chr11 94032339 94032683 -54750789 + THE1B LTR MaLR 1 364 0 11288 95 2 40 chr11 94032683 94034326 -54749146 + THE1B-int LTR MaLR 1 1580 0 2048 135 85 18 chr11 94034326 94034667 -54748805 + THE1B LTR MaLR 1 364 0 826 296 40 47 chr11 94034667 94035096 -54748376 - L1M4 LINE L1 -1227 4919 4489 * 2419 276 32 19 chr11 94035095 94036124 -54747348 + L1ME2 LINE L1 5102 6140 -24 2505 151 164 11 chr11 94036388 94036845 -54746627 + MER1A DNA MER1_type 1 527 0 2935 284 63 57 chr11 94037003 94038518 -54744954 - L2 LINE L2 0 3313 1779 2208 107 6 25 chr11 94038751 94039070 -54744402 - AluSq SINE Alu 0 313 1 183 319 160 35 chr11 94039500 94039644 -54743828 - L2 LINE L2 -246 3026 2865 603 250 19 6 chr11 94040238 94040394 -54743078 - MER103 DNA DNA -1 165 8 593 192 0 0 chr11 94040666 94040765 -54742707 + L1M1 LINE L1 315 413 -7152 270 207 0 0 chr11 94041070 94041128 -54742344 + (TA)n Simple_repeat Simple_repeat 2 59 0 656 278 118 12 chr11 94041333 94041588 -54741884 - MLT1I LTR MaLR -34 375 94 329 335 13 46 chr11 94041713 94041865 -54741607 - MIR3 SINE MIR -4 204 58 266 259 138 0 chr11 94041886 94042002 -54741470 - L1MA10 LINE L1 0 6334 6203 * 14089 160 73 13 chr11 94042000 94044067 -54739405 + L1M1 LINE L1 11 1954 -5611 216 0 0 0 chr11 94044067 94044091 -54739381 + (GA)n Simple_repeat Simple_repeat 1 24 0 14089 160 73 13 chr11 94044091 94045803 -54737669 + L1M1 LINE L1 1954 4377 -3188 233 250 89 0 chr11 94045804 94045860 -54737612 - L1MEc LINE L1 -6299 97 37 530 296 181 35 chr11 94046494 94046865 -54736607 + MLT1H LTR MaLR 123 547 -2 226 342 74 40 chr11 94047262 94047411 -54736061 + L2 LINE L2 2381 2534 -780 197 308 0 0 chr11 94047450 94047502 -54735970 + L2 LINE L2 2703 2754 -560 230 323 103 46 chr11 94047525 94047720 -54735752 + MLT1L LTR MaLR 1 206 -409 * 375 300 148 50 chr11 94047688 94047991 -54735481 + MLT1K LTR MaLR 189 521 -67 225 237 0 0 chr11 94047992 94048051 -54735421 + CT-rich Low_complexity Low_complexity 3 61 0 284 234 80 103 chr11 94048185 94048360 -54735112 - L2 LINE L2 -137 3176 3006 382 274 226 10 chr11 94051374 94051582 -54731890 + MIR SINE MIR 7 259 -3 232 259 0 0 chr11 94051597 94051651 -54731821 + MLT1K LTR MaLR 528 581 -7 6613 119 13 9 chr11 94051651 94052746 -54730726 + L1MA3 LINE L1 5207 6305 0 222 105 0 0 chr11 94053913 94053951 -54729521 + (TG)n Simple_repeat Simple_repeat 1 38 0 602 240 61 56 chr11 94054438 94054634 -54728838 + MIR SINE MIR 50 246 -16 611 316 56 17 chr11 94055670 94055901 -54727571 - MIR SINE MIR -21 241 2 1745 186 24 15 chr11 94057026 94057365 -54726107 + MER2 DNA MER2_type 2 343 -1 212 343 43 119 chr11 94058033 94058243 -54725229 - L2 LINE L2 -96 3176 2983 616 227 101 98 chr11 94058380 94058666 -54724806 + LTR16A LTR ERVL 158 444 -6 195 129 0 0 chr11 94059859 94059890 -54723582 + (TCC)n Simple_repeat Simple_repeat 1 31 0 470 271 22 66 chr11 94060101 94060282 -54723190 - FAM SINE Alu -2 173 1 251 65 0 0 chr11 94060333 94060364 -54723108 - L1PA15 LINE L1 -564 5601 5571 3423 139 13 2 chr11 94060364 94060910 -54722562 + L1PA15 LINE L1 5605 6156 -9 247 377 18 9 chr11 94060976 94061090 -54722382 - L2 LINE L2 -19 3253 3139 571 316 161 26 chr11 94061137 94061603 -54721869 - L2 LINE L2 -541 2773 2245 2148 113 3 0 chr11 94061639 94061941 -54721531 + AluSc SINE Alu 5 307 -2 462 337 97 33 chr11 94061969 94062486 -54720986 - L2 LINE L2 -2065 1249 700 425 271 66 20 chr11 94062614 94062765 -54720707 - MIR SINE MIR 0 262 105 315 150 0 0 chr11 94064022 94064082 -54719390 + (CA)n Simple_repeat Simple_repeat 2 61 0 1479 226 118 0 chr11 94064809 94065190 -54718282 + MSTA LTR MaLR 1 426 -2 4937 112 22 1 chr11 94065376 94065757 -54717715 + L1PB1 LINE L1 5396 5768 -383 297 0 0 0 chr11 94065757 94065790 -54717682 + (CA)n Simple_repeat Simple_repeat 2 34 0 4937 112 22 1 chr11 94065790 94066148 -54717324 + L1PB1 LINE L1 5768 6150 -1 194 33 67 0 chr11 94066238 94066268 -54717204 + T-rich Low_complexity Low_complexity 2 33 0 818 113 24 24 chr11 94066270 94066394 -54717078 - FRAM SINE Alu -30 146 23 394 322 65 1 chr11 94066700 94066866 -54716606 - MIR SINE MIR -63 145 17 1704 151 97 178 chr11 94067046 94067817 -54715655 - LTR8A LTR ERV1 -18 709 1 199 224 41 20 chr11 94067981 94068030 -54715442 - L2 LINE L2 -54 3259 3210 755 292 143 21 chr11 94068293 94068670 -54714802 + L1MCc LINE L1 650 1072 -5351 2451 150 12 104 chr11 94068697 94069204 -54714268 + LTR39 LTR ERV1 3 462 -321 603 81 0 0 chr11 94069204 94069290 -54714182 + (TA)n Simple_repeat Simple_repeat 2 87 0 277 190 82 0 chr11 94069670 94069828 -54713644 + (TG)n Simple_repeat Simple_repeat 1 171 0 * 350 189 27 54 chr11 94069718 94069903 -54713569 + (GTGTG)n Simple_repeat Simple_repeat 1 180 0 2793 212 26 40 chr11 94070013 94070809 -54712663 - L1 LINE L1 -815 6033 5249 7764 255 37 42 chr11 94070828 94072747 -54710725 - L1 LINE L1 -2450 4398 2471 222 0 79 0 chr11 94072747 94072785 -54710687 + T-rich Low_complexity Low_complexity 2 42 0 7764 255 37 42 chr11 94072785 94075280 -54708192 - L1 LINE L1 -4377 2471 8 1615 187 144 3 chr11 94076001 94076376 -54707096 + MSTA LTR MaLR 1 428 0 1827 180 127 69 chr11 94077104 94077404 -54706068 - MLT2B1 LTR ERVL 0 520 180 222 37 0 0 chr11 94077404 94077431 -54706041 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1827 180 127 69 chr11 94077431 94077620 -54705852 - MLT2B1 LTR ERVL -340 180 3 3297 96 7 0 chr11 94078077 94078526 -54704946 + MLT2A2 LTR ERVL 1 452 -1 41893 92 10 6 chr11 94078528 94084159 -54699313 + HERVL-A2 LTR ERVL 2 5654 0 1091 93 0 0 chr11 94084159 94084309 -54699163 + MLT2A2 LTR ERVL 1 150 -303 3332 100 7 0 chr11 94084310 94084760 -54698712 + MLT2A2 LTR ERVL 1 453 0 215 326 159 38 chr11 94084881 94085062 -54698410 + L2 LINE L2 2266 2424 -890 249 33 0 0 chr11 94085062 94085092 -54698380 + (TC)n Simple_repeat Simple_repeat 1 30 0 215 326 159 38 chr11 94085092 94085348 -54698124 + L2 LINE L2 2424 2823 -491 * 225 239 0 99 chr11 94085338 94085409 -54698063 + L2 LINE L2 3249 3312 -1 286 294 0 28 chr11 94085736 94085845 -54697627 + GA-rich Low_complexity Low_complexity 3 108 0 684 230 7 14 chr11 94086014 94086228 -54697244 + FRAM SINE Alu 1 212 0 2121 132 7 0 chr11 94086592 94086902 -54696570 + AluSx SINE Alu 1 312 0 388 276 109 25 chr11 94087513 94087752 -54695720 - HAL1 LINE L1 0 2507 2249 276 143 71 18 chr11 94087808 94087920 -54695552 + (TA)n Simple_repeat Simple_repeat 2 119 0 517 269 122 39 chr11 94088111 94088390 -54695082 - HAL1 LINE L1 -678 1829 1528 258 336 64 13 chr11 94088366 94088664 -54694808 - HAL1 LINE L1 -1228 1279 967 * 1705 163 36 27 chr11 94088734 94089035 -54694437 - AluSx SINE Alu -8 304 1 252 86 0 0 chr11 94089494 94089529 -54693943 + (CA)n Simple_repeat Simple_repeat 2 36 0 189 0 0 0 chr11 94089528 94089549 -54693923 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 835 257 154 43 chr11 94090513 94091135 -54692337 - LTR50 LTR ERVL 0 795 8 208 278 53 71 chr11 94092124 94092293 -54691179 - L2 LINE L2 -2 3311 3146 321 329 12 0 chr11 94092532 94092614 -54690858 - MIR SINE MIR -179 83 1 191 238 100 50 chr11 94093254 94093334 -54690138 - L2 LINE L2 -7 3306 3223 188 338 35 55 chr11 94093330 94093475 -54689997 - L2 LINE L2 -401 2913 2772 * 203 250 54 54 chr11 94094709 94094801 -54688671 + MIR SINE MIR 12 103 -159 1881 246 92 21 chr11 94094802 94095323 -54688149 + MLT1E LTR MaLR 28 585 -8 204 189 0 57 chr11 94095326 94095379 -54688093 + MIR SINE MIR 85 134 -128 277 273 111 0 chr11 94095606 94095705 -54687767 + MER103 DNA DNA 13 122 -44 237 203 29 14 chr11 94096592 94096661 -54686811 - L1ME LINE L1 -259 5862 5793 31 0 0 0 chr11 94096864 94096895 -54686577 + AT_rich Low_complexity Low_complexity 1 31 0 2121 173 36 25 chr11 94096895 94097370 -54686102 - L1MA7 LINE L1 -2 6289 5810 739 135 8 32 chr11 94097402 94097556 -54685916 + L1M2 LINE L1 5654 5802 -498 288 176 28 37 chr11 94097575 94097683 -54685789 + (TA)n Simple_repeat Simple_repeat 2 108 0 22 80 0 0 chr11 94098007 94098057 -54685415 + AT_rich Low_complexity Low_complexity 1 50 0 24 32 0 0 chr11 94098101 94098132 -54685340 + AT_rich Low_complexity Low_complexity 1 31 0 7011 196 29 25 chr11 94098135 94100316 -54683156 - L1MA4 LINE L1 -15 6285 4092 2230 113 13 0 chr11 94100316 94100617 -54682855 - AluSx SINE Alu -7 305 1 7011 196 29 25 chr11 94100617 94101048 -54682424 - L1MA4 LINE L1 -2208 4092 3664 4680 219 35 21 chr11 94101047 94101622 -54681850 + L1 LINE L1 2344 2909 -3237 * 1805 78 0 0 chr11 94101622 94101852 -54681620 + AluY SINE Alu 82 311 0 4680 219 35 21 chr11 94101852 94102553 -54680919 + L1 LINE L1 2909 3638 -2508 2059 137 0 10 chr11 94102760 94103060 -54680412 - AluSx SINE Alu -13 299 3 408 354 86 15 chr11 94103087 94103412 -54680060 + L1ME4a LINE L1 5491 5838 -283 206 240 0 20 chr11 94103501 94103551 -54679921 + MIR SINE MIR 214 262 0 486 0 0 0 chr11 94103727 94103781 -54679691 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 213 224 20 0 chr11 94105089 94105138 -54678334 + (TATG)n Simple_repeat Simple_repeat 3 52 0 315 347 8 8 chr11 94105216 94105337 -54678135 - MIR SINE MIR -136 126 6 2289 123 39 6 chr11 94105765 94106239 -54677233 - L1PB1 LINE L1 -522 5629 5141 3035 140 16 25 chr11 94106246 94106796 -54676676 + L1PB1 LINE L1 5604 6148 -3 210 269 167 0 chr11 94106820 94106898 -54676574 - L2 LINE L2 -2 3311 3221 977 302 79 26 chr11 94107086 94107702 -54675770 - L2 LINE L2 -204 3109 2469 374 282 159 25 chr11 94108073 94108470 -54675002 - L1ME4a LINE L1 -194 5927 5478 214 314 29 73 chr11 94110942 94111079 -54672393 - L2 LINE L2 -4 3309 3179 263 279 63 27 chr11 94111379 94111490 -54671982 + LTR16C LTR ERVL 5 119 -372 26 64 0 0 chr11 94112168 94112215 -54671257 + AT_rich Low_complexity Low_complexity 1 47 0 1690 204 62 16 chr11 94112266 94112639 -54670833 + MER57A LTR ERV1 10 399 -4 1228 205 123 31 chr11 94112647 94113033 -54670439 - MER31A LTR ERV1 -37 444 42 415 305 126 58 chr11 94114010 94114541 -54668931 + L1MEd LINE L1 57 623 -5496 35 0 0 0 chr11 94114836 94114871 -54668601 + AT_rich Low_complexity Low_complexity 1 35 0 1036 251 140 9 chr11 94114947 94115410 -54668062 + L1ME2 LINE L1 5631 6154 -10 432 91 0 0 chr11 94116094 94116160 -54667312 + (TA)n Simple_repeat Simple_repeat 2 67 0 1681 198 3 16 chr11 94116160 94116473 -54666999 + LTR39 LTR ERV1 475 783 0 375 259 7 56 chr11 94116523 94116666 -54666806 + L1ME LINE L1 1207 1342 -5081 479 268 170 13 chr11 94116700 94116786 -54666686 + L1ME LINE L1 4508 4579 -2362 2189 113 0 0 chr11 94116786 94117087 -54666385 - AluSg1 SINE Alu -8 301 1 479 268 170 13 chr11 94117087 94117331 -54666141 + L1ME LINE L1 4579 4881 -2060 670 224 106 17 chr11 94117332 94117511 -54665961 - MLT1A1 LTR MaLR 0 365 171 1907 275 58 8 chr11 94117524 94118243 -54665229 + L1ME LINE L1 5248 6002 -939 562 193 18 9 chr11 94118249 94118363 -54665109 + MLT1C LTR MaLR 351 465 -2 1095 315 85 74 chr11 94118525 94119421 -54664051 + ERVL LTR ERVL 3543 4448 -1316 585 279 79 19 chr11 94119566 94119781 -54663691 + ERVL LTR ERVL 4644 4871 -893 353 226 0 70 chr11 94120041 94120156 -54663316 + LTR33A LTR ERVL 417 523 0 1580 203 3 20 chr11 94120648 94120949 -54662523 - AluJo SINE Alu -16 296 1 306 395 64 0 chr11 94120951 94121060 -54662412 - L2 LINE L2 -23 3249 3134 246 253 95 42 chr11 94121182 94121277 -54662195 - MIR3 SINE MIR -94 114 15 356 167 39 13 chr11 94121519 94121597 -54661875 + MER116 DNA Mariner 1 80 0 237 269 77 39 chr11 94122135 94122239 -54661233 + L1ME LINE L1 6283 6390 -2213 269 179 54 18 chr11 94122258 94122314 -54661158 + MER106A DNA MER1_type 1 58 -178 206 176 20 0 chr11 94122362 94122413 -54661059 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 430 230 58 7 chr11 94122432 94122571 -54660901 + MER106B DNA MER1_type 914 1059 0 368 131 16 0 chr11 94122609 94122670 -54660802 - LTR62 LTR ERVK -657 62 1 1485 221 46 3 chr11 94122671 94122956 -54660516 - MER21B LTR ERV1 -566 297 1 260 276 81 32 chr11 94123002 94123223 -54660249 + L1ME LINE L1 6431 6662 -254 234 128 0 0 chr11 94123277 94123316 -54660156 + (TA)n Simple_repeat Simple_repeat 2 40 0 965 309 111 29 chr11 94123557 94124380 -54659092 - HAL1 LINE L1 -102 2405 1516 6484 178 34 14 chr11 94124414 94124960 -54658512 - L1PB3 LINE L1 -2 6152 5618 2344 73 7 0 chr11 94124960 94125260 -54658212 + AluY SINE Alu 1 302 -9 6484 178 34 14 chr11 94125260 94126988 -54656484 - L1PB3 LINE L1 -536 5618 3829 8277 175 6 5 chr11 94126994 94129570 -54653902 - L1PB1 LINE L1 -1 6866 4290 9610 136 38 19 chr11 94129571 94129827 -54653645 - L1PB1 LINE L1 -3155 3707 3457 2156 141 28 25 chr11 94129827 94130190 -54653282 + THE1B LTR MaLR 1 364 0 9610 136 38 19 chr11 94130190 94131903 -54651569 - L1PB1 LINE L1 -3405 3457 1523 4651 102 34 1 chr11 94131903 94132602 -54650870 + LTR30 LTR ERV1 1 722 0 9610 136 38 19 chr11 94132602 94133524 -54649948 - L1PB1 LINE L1 -5339 1523 620 1110 168 5 0 chr11 94133504 94133701 -54649771 - L1PB1 LINE L1 -6663 200 3 * 2858 290 69 27 chr11 94133707 94135575 -54647897 - L1PB3 LINE L1 -985 1522 418 303 353 59 15 chr11 94135805 94135941 -54647531 - L1PB3 LINE L1 -2364 143 2 218 340 20 30 chr11 94138022 94138122 -54645350 + L3 LINE CR1 1414 1512 -65 3105 264 79 8 chr11 94138582 94139838 -54643634 + L1ME1 LINE L1 3016 4360 -1786 1570 236 84 10 chr11 94139854 94140248 -54643224 + MSTB LTR MaLR 4 426 0 2404 252 78 34 chr11 94140248 94141237 -54642235 + L1ME1 LINE L1 4377 5321 -845 2124 134 0 3 chr11 94141237 94141551 -54641921 + AluSq SINE Alu 1 313 0 2404 252 78 34 chr11 94141551 94142044 -54641428 + L1ME1 LINE L1 5321 5946 -220 2240 94 0 0 chr11 94142044 94142351 -54641121 + AluSq SINE Alu 1 307 -6 2404 252 78 34 chr11 94142351 94142394 -54641078 + L1ME1 LINE L1 5946 5986 -180 769 142 19 74 chr11 94143002 94143164 -54640308 + MLT1A1 LTR MaLR 5 157 -208 223 276 191 9 chr11 94143591 94143696 -54639776 - MIR3 SINE MIR -6 202 79 474 301 82 11 chr11 94143813 94143996 -54639476 - MLT1I LTR MaLR -15 394 199 43 35 0 0 chr11 94144431 94144488 -54638984 + AT_rich Low_complexity Low_complexity 1 57 0 241 286 0 0 chr11 94144613 94144683 -54638789 + CT-rich Low_complexity Low_complexity 2 71 0 830 178 26 78 chr11 94144785 94144976 -54638496 + MER5A DNA MER1_type 6 186 -3 338 156 109 0 chr11 94145356 94145420 -54638052 + MER58 DNA MER1_type 204 274 -67 395 298 78 0 chr11 94145869 94146010 -54637462 + MIR SINE MIR 56 207 -55 201 377 25 33 chr11 94147280 94147402 -54636070 - L2 LINE L2 -223 3049 2929 456 277 138 6 chr11 94147800 94147959 -54635513 - MIR SINE MIR -47 215 36 272 340 21 28 chr11 94148617 94148758 -54634714 - L2 LINE L2 -2 3311 3172 655 234 21 42 chr11 94149037 94149229 -54634243 - MER5A DNA MER1_type -1 188 1 21 36 0 0 chr11 94149738 94149766 -54633706 + AT_rich Low_complexity Low_complexity 1 28 0 222 325 24 12 chr11 94149938 94150021 -54633451 + MIR3 SINE MIR 110 193 -15 22 0 0 0 chr11 94150377 94150399 -54633073 + AT_rich Low_complexity Low_complexity 1 22 0 339 239 23 11 chr11 94150544 94150632 -54632840 - MIR3 SINE MIR -10 198 110 262 304 79 59 chr11 94150829 94151220 -54632252 + L1MC4a LINE L1 2439 2837 -3309 1474 192 73 20 chr11 94151514 94151857 -54631615 + MLT1A1 LTR MaLR 5 365 0 421 285 169 24 chr11 94151920 94152600 -54630872 + L1MC4a LINE L1 3896 4677 -1469 51 31 0 0 chr11 94152731 94152796 -54630676 + AT_rich Low_complexity Low_complexity 1 65 0 540 302 58 85 chr11 94152947 94153358 -54630114 + L1MC4a LINE L1 5257 5656 -506 848 336 10 16 chr11 94153463 94153775 -54629697 + MLT1I LTR MaLR 100 409 0 261 244 116 31 chr11 94153810 94154023 -54629449 - MLT1H LTR MaLR -28 521 286 319 342 13 63 chr11 94154189 94154426 -54629046 + L1MC4a LINE L1 5694 5918 -1890 22 0 0 0 chr11 94156524 94156546 -54626926 + AT_rich Low_complexity Low_complexity 1 22 0 2266 239 124 51 chr11 94156554 94157343 -54626129 + L1MDa LINE L1 14 860 -5680 586 256 12 6 chr11 94157346 94157510 -54625962 + L1MD2 LINE L1 6195 6359 0 780 282 101 10 chr11 94157758 94158056 -54625416 + MLT1J2 LTR MaLR 1 325 -125 380 333 11 23 chr11 94158399 94158576 -54624896 - MER117 DNA MER1_type -10 187 13 225 152 0 0 chr11 94158891 94158924 -54624548 - MER82 DNA MER2_type -329 324 292 534 280 11 46 chr11 94159800 94159975 -54623497 - MIR SINE MIR -1 261 93 301 298 36 0 chr11 94159997 94160081 -54623391 + L2 LINE L2 3225 3311 -2 2693 252 32 2 chr11 94160786 94161409 -54622063 - MER82 DNA MER2_type -1 652 11 272 355 51 0 chr11 94161424 94161562 -54621910 - MIR3 SINE MIR -10 198 54 671 248 40 62 chr11 94161941 94162167 -54621305 + MER58A DNA MER1_type 4 224 0 28 61 0 0 chr11 94163345 94163394 -54620078 + AT_rich Low_complexity Low_complexity 1 49 0 197 264 185 62 chr11 94163934 94164112 -54619360 + MIR SINE MIR 62 261 -1 28 48 0 0 chr11 94164882 94164924 -54618548 + AT_rich Low_complexity Low_complexity 1 42 0 2186 70 3 51 chr11 94164987 94165329 -54618143 - AluY SINE Alu 0 311 1 248 260 73 0 chr11 94165430 94165526 -54617946 - MER103 DNA DNA -51 115 13 521 201 58 71 chr11 94166747 94166901 -54616571 + MER104 DNA Tc2 29 180 0 268 254 0 0 chr11 94167162 94167217 -54616255 + L2 LINE L2 3216 3270 -2 369 338 0 22 chr11 94167386 94167522 -54615950 - MIR3 SINE MIR -14 194 62 483 348 165 15 chr11 94167623 94168103 -54615369 + L2 LINE L2 2266 2817 -497 352 335 19 25 chr11 94168169 94168330 -54615142 + MIR SINE MIR 8 167 -95 455 347 77 50 chr11 94168399 94168736 -54614736 + L2 LINE L2 2918 3263 -9 274 183 127 14 chr11 94168759 94168830 -54614642 + L2 LINE L2 3235 3313 0 343 320 92 67 chr11 94169924 94170314 -54613158 + L2 LINE L2 2869 3268 -45 748 292 29 5 chr11 94170336 94170545 -54612927 - MIR SINE MIR -31 231 18 273 29 0 0 chr11 94170916 94170950 -54612522 + (TG)n Simple_repeat Simple_repeat 1 34 0 797 173 0 0 chr11 94173332 94173465 -54610007 - FLAM_C SINE Alu 0 133 1 918 323 131 9 chr11 94173526 94174322 -54609150 - L2 LINE L2 0 3313 2435 215 371 86 36 chr11 94174817 94174957 -54608515 - L2 LINE L2 0 3272 3126 804 293 53 30 chr11 94175466 94175604 -54607868 + L1ME LINE L1 5413 5546 -616 1975 138 3 0 chr11 94175604 94175928 -54607544 - AluSx SINE Alu 0 325 1 804 293 53 30 chr11 94175928 94176181 -54607291 + L1ME LINE L1 5546 5814 -348 400 344 11 27 chr11 94176247 94176430 -54607042 + L2 LINE L2 2365 2544 -770 698 262 30 0 chr11 94176469 94176633 -54606839 - MER58A DNA MER1_type -16 208 40 190 234 21 0 chr11 94176701 94176748 -54606724 + L2 LINE L2 3264 3311 -2 201 74 0 0 chr11 94177219 94177246 -54606226 + (TG)n Simple_repeat Simple_repeat 1 27 0 529 16 0 0 chr11 94177627 94177733 -54605739 + L1PA4 LINE L1 6082 6187 0 405 325 140 0 chr11 94178384 94178584 -54604888 + MIR SINE MIR 2 229 -33 205 260 20 20 chr11 94178598 94178648 -54604824 + MER91C DNA MER1_type 39 88 -52 18457 30 2 0 chr11 94178911 94181892 -54601580 - L1PA3 LINE L1 -1 6154 3170 557 278 160 0 chr11 94182441 94182628 -54600844 + MIR SINE MIR 3 219 -43 194 256 0 0 chr11 94182653 94182692 -54600780 - MIR SINE MIR -112 150 112 1672 98 126 20 chr11 94283239 94283529 -54499943 - AluY SINE Alu 0 317 1 5429 154 15 7 chr11 94383612 94384241 -54399231 - L1PA3 LINE L1 -209 5946 5323 947 28 0 0 chr11 94384241 94384348 -54399124 - U6 snRNA snRNA 0 107 1 5429 154 15 7 chr11 94384348 94385174 -54398298 - L1PA3 LINE L1 -832 5323 2096 313 312 92 35 chr11 94385621 94385794 -54397678 + MIR SINE MIR 48 230 -32 222 356 87 10 chr11 94386185 94386289 -54397183 - MIR SINE MIR -112 150 39 754 239 28 62 chr11 94386649 94386995 -54396477 + MLT2A2 LTR ERVL 218 453 0 4965 185 39 56 chr11 94387664 94388851 -54394621 - L1MC3 LINE L1 -8 7777 6612 538 264 143 9 chr11 94388983 94389199 -54394273 + MIR SINE MIR 7 251 -11 975 168 7 0 chr11 94389424 94389579 -54393893 - MER2 DNA MER2_type -189 156 1 933 275 114 23 chr11 94389826 94390299 -54393173 + MER113 DNA MER1_type? 6 521 0 249 339 78 26 chr11 94390323 94390553 -54392919 + MIR SINE MIR 8 249 -13 23 0 0 0 chr11 94390566 94390589 -54392883 + AT_rich Low_complexity Low_complexity 1 23 0 186 290 97 16 chr11 94392309 94392371 -54391101 + MIR SINE MIR 20 86 -176 2283 237 14 21 chr11 94392706 94393372 -54390100 + L1 LINE L1 2490 3150 -2996 1110 181 70 57 chr11 94393393 94393707 -54389765 + L1 LINE L1 3317 3634 -2512 2554 174 10 12 chr11 94393711 94394216 -54389256 + L1 LINE L1 4768 5271 -875 3576 167 41 9 chr11 94394216 94394880 -54388592 - Tigger1 DNA MER2_type -1 2417 1733 452 295 24 24 chr11 94396257 94396423 -54387049 - MIR SINE MIR -9 253 88 21 0 0 0 chr11 94396480 94396501 -54386971 + AT_rich Low_complexity Low_complexity 1 21 0 180 304 0 0 chr11 94396513 94396559 -54386913 + L2 LINE L2 3256 3301 -12 469 269 35 35 chr11 94397896 94398067 -54385405 + MIR SINE MIR 92 262 0 1135 352 69 11 chr11 94399109 94399716 -54383756 + L2 LINE L2 2414 3058 -214 380 301 123 27 chr11 94399778 94399924 -54383548 + ERVL LTR ERVL 4143 4302 -1462 211 219 47 16 chr11 94400242 94400306 -54383166 - MIR SINE MIR -87 175 110 15336 95 11 5 chr11 94400669 94402941 -54380531 + L1P LINE L1 1007 3291 -2855 240 330 115 40 chr11 94404754 94404954 -54378518 + MIR SINE MIR 16 230 -32 275 290 0 14 chr11 94405329 94405398 -54378074 + MER63A DNA MER1_type 143 210 0 250 298 71 0 chr11 94405467 94405551 -54377921 - MIR SINE MIR -17 245 156 364 310 135 71 chr11 94407860 94408294 -54375178 - L2 LINE L2 -4 3268 2779 1887 126 23 16 chr11 94408294 94408603 -54374869 + AluSq SINE Alu 1 311 -2 364 310 135 71 chr11 94408603 94408848 -54374624 - L2 LINE L2 -493 2779 2551 627 282 82 49 chr11 94409262 94409567 -54373905 + L2 LINE L2 2366 2680 -634 1270 162 14 2 chr11 94409850 94410136 -54373336 + L1PA15 LINE L1 5186 5472 -693 269 237 283 14 chr11 94410141 94410254 -54373218 - FRAM SINE Alu -47 119 1 4222 142 12 3 chr11 94410256 94410945 -54372527 + L1PA15 LINE L1 5461 6155 -10 3701 192 17 12 chr11 94410945 94411716 -54371756 + L1MB3 LINE L1 5390 6164 -19 652 245 110 43 chr11 94411773 94412055 -54371417 + MLT1D LTR MaLR 157 457 -48 1075 238 73 7 chr11 94412071 94412374 -54371098 + L1MC3 LINE L1 6226 6548 -1237 24 32 0 0 chr11 94412679 94412710 -54370762 + AT_rich Low_complexity Low_complexity 1 31 0 1717 188 145 10 chr11 94412730 94413129 -54370343 + L1M3 LINE L1 5274 5726 -442 189 341 176 0 chr11 94414680 94414771 -54368701 + MIR3 SINE MIR 85 191 -17 1716 136 30 99 chr11 94415246 94415426 -54368046 + L1PB4 LINE L1 5718 5856 -300 12423 30 0 0 chr11 94415426 94417684 -54365788 + L1PA3 LINE L1 3901 6152 -3 1716 136 30 99 chr11 94417684 94417907 -54365565 + L1PB4 LINE L1 5856 6093 -63 16011 66 3 4 chr11 94418033 94420950 -54362522 + L1PA6 LINE L1 3224 6152 -2 256 406 24 6 chr11 94421982 94422147 -54361325 - L2 LINE L2 -20 3293 3126 250 344 40 66 chr11 94422673 94422824 -54360648 + MIR SINE MIR 110 256 -6 252 347 99 8 chr11 94422949 94423070 -54360402 - L2 LINE L2 -1 3312 3181 189 346 0 26 chr11 94423531 94423609 -54359863 - L2 LINE L2 -1 3312 3237 180 0 0 0 chr11 94423610 94423630 -54359842 + (CAA)n Simple_repeat Simple_repeat 2 21 0 261 418 42 8 chr11 94423822 94424061 -54359411 - L2 LINE L2 -219 3053 2807 6888 53 38 0 chr11 94424230 94425208 -54358264 - L1PA7 LINE L1 -6 6148 5157 1909 157 0 0 chr11 94425525 94425811 -54357661 - AluSx SINE Alu -14 298 13 234 277 18 36 chr11 94425811 94425913 -54357559 + LTR33 LTR ERVL 286 387 -134 257 306 22 67 chr11 94426213 94426347 -54357125 - L2 LINE L2 -2 3311 3184 496 276 115 6 chr11 94426359 94426533 -54356939 - L2 LINE L2 -566 2748 2556 200 182 0 0 chr11 94427121 94427154 -54356318 + GA-rich Low_complexity Low_complexity 1 33 0 30 45 0 0 chr11 94427515 94427559 -54355913 + AT_rich Low_complexity Low_complexity 1 44 0 4955 218 26 14 chr11 94428027 94429140 -54354332 + L1M1 LINE L1 16 1821 -5744 17819 182 25 6 chr11 94429248 94434155 -54349317 + L1PA13 LINE L1 1808 6805 -9 29 28 0 0 chr11 94434306 94434342 -54349130 + AT_rich Low_complexity Low_complexity 1 36 0 236 198 36 45 chr11 94434402 94434513 -54348959 + (CACAC)n Simple_repeat Simple_repeat 2 111 0 34 65 0 0 chr11 94436084 94436146 -54347326 + AT_rich Low_complexity Low_complexity 1 62 0 331 267 91 40 chr11 94436367 94436543 -54346929 - MIR SINE MIR -16 246 62 234 315 67 0 chr11 94436984 94437073 -54346399 - MIR SINE MIR -56 206 112 22 0 0 0 chr11 94437839 94437861 -54345611 + AT_rich Low_complexity Low_complexity 1 22 0 426 152 114 0 chr11 94438092 94438171 -54345301 + L1MC1 LINE L1 6245 6332 -1 304 356 19 10 chr11 94439085 94439189 -54344283 + HAL1 LINE L1 2398 2502 -5 875 168 147 72 chr11 94439321 94439536 -54343936 + L1MA8 LINE L1 5533 5777 -514 198 0 0 0 chr11 94439536 94439558 -54343914 + (TA)n Simple_repeat Simple_repeat 1 22 0 875 168 147 72 chr11 94439558 94439635 -54343837 + L1MA8 LINE L1 5777 5847 -444 257 263 163 0 chr11 94440168 94440248 -54343224 + MIR SINE MIR 55 147 -115 22 80 0 0 chr11 94440265 94440315 -54343157 + AT_rich Low_complexity Low_complexity 1 50 0 243 327 67 34 chr11 94441996 94442012 -54341460 + L2 LINE L2 3078 3092 -221 207 0 0 0 chr11 94442012 94442035 -54341437 + (CA)n Simple_repeat Simple_repeat 2 24 0 243 327 67 34 chr11 94442035 94442226 -54341246 + L2 LINE L2 3092 3292 -21 2467 204 44 41 chr11 94442366 94442999 -54340473 - L1MB4 LINE L1 0 6180 5546 468 314 29 0 chr11 94444033 94444173 -54339299 + MIR3 SINE MIR 17 160 -48 203 333 27 0 chr11 94445096 94445171 -54338301 - L3 LINE CR1 -17 1560 1484 543 218 9 0 chr11 94445425 94445535 -54337937 + MER45A DNA AcHobo 68 178 0 397 255 10 10 chr11 94445620 94445722 -54337750 - L3 LINE CR1 -458 1119 1018 4791 181 25 3 chr11 94445971 94446895 -54336577 - L1P LINE L1 -5192 954 11 320 286 167 77 chr11 94447269 94447503 -54335969 - MIR SINE MIR -6 256 2 306 308 232 9 chr11 94448232 94448443 -54335029 + L2 LINE L2 2848 3105 -167 359 288 23 23 chr11 94448752 94448884 -54334588 + MIR SINE MIR 67 198 -64 27 29 0 0 chr11 94448979 94449013 -54334459 + AT_rich Low_complexity Low_complexity 1 34 0 591 162 99 9 chr11 94449014 94449125 -54334347 - FLAM_C SINE Alu -22 121 1 360 64 0 0 chr11 94449417 94449464 -54334008 + (TA)n Simple_repeat Simple_repeat 2 48 0 27 0 0 0 chr11 94450329 94450356 -54333116 + AT_rich Low_complexity Low_complexity 1 27 0 25 51 0 0 chr11 94450391 94450430 -54333042 + AT_rich Low_complexity Low_complexity 1 39 0 213 39 0 0 chr11 94450492 94450518 -54332954 + (TAA)n Simple_repeat Simple_repeat 3 28 0 2141 133 48 20 chr11 94450521 94450875 -54332597 - THE1B LTR MaLR 0 364 1 573 313 32 20 chr11 94451154 94451400 -54332072 - MIR SINE MIR -12 250 2 502 121 44 0 chr11 94451987 94452078 -54331394 - L1P LINE L1 -1626 4520 4426 * 4149 105 16 0 chr11 94452065 94452677 -54330795 + L1P LINE L1 3807 4428 -1718 658 202 93 39 chr11 94453226 94453483 -54329989 - MER63 DNA MER1_type 0 1061 791 5072 99 11 3 chr11 94453483 94454268 -54329204 - L1PA10 LINE L1 -198 5970 5181 1151 71 13 0 chr11 94454268 94454423 -54329049 + L1PA10 LINE L1 6010 6166 -2 462 150 157 20 chr11 94454553 94454700 -54328772 - Charlie1 DNA MER1_type -81 2680 2514 1727 143 0 59 chr11 94455290 94455597 -54327875 + AluJb SINE Alu 1 289 -23 274 360 103 30 chr11 94455642 94455845 -54327627 - L2 LINE L2 -248 3024 2807 914 167 158 0 chr11 94455933 94456155 -54327317 - Charlie5 DNA MER1_type 0 2622 2366 354 287 144 22 chr11 94457413 94457594 -54325878 + MIR SINE MIR 20 222 -40 206 267 0 0 chr11 94457694 94457754 -54325718 - MIR SINE MIR -16 246 187 473 353 212 13 chr11 94457766 94458318 -54325154 + L2 LINE L2 1701 2362 -952 23 33 0 0 chr11 94459729 94459759 -54323713 + AT_rich Low_complexity Low_complexity 1 30 0 451 260 24 97 chr11 94459786 94460084 -54323388 + L1ME LINE L1 5462 5671 -450 3635 151 9 27 chr11 94460194 94460832 -54322640 + Tigger3b DNA MER2_type 2 628 -603 30 0 0 0 chr11 94462256 94462286 -54321186 + AT_rich Low_complexity Low_complexity 1 30 0 316 111 0 0 chr11 94462286 94462340 -54321132 - L1PA16 LINE L1 -16 6150 6097 773 314 120 34 chr11 94462960 94462998 -54320474 + L2 LINE L2 1705 1738 -1576 14520 159 31 12 chr11 94462998 94465665 -54317807 - Tigger2 DNA MER2_type 0 2718 1 773 314 120 34 chr11 94465665 94466302 -54317170 + L2 LINE L2 1738 2438 -876 9243 179 45 68 chr11 94466361 94467669 -54315803 + Tigger1 DNA MER2_type 3 1340 -1078 297 0 0 0 chr11 94467669 94467702 -54315770 + (CA)n Simple_repeat Simple_repeat 2 34 0 9243 179 45 68 chr11 94467702 94468753 -54314719 + Tigger1 DNA MER2_type 1340 2304 -114 2208 95 0 0 chr11 94468753 94469047 -54314425 - AluY SINE Alu -13 298 5 9243 179 45 68 chr11 94469047 94469160 -54314312 + Tigger1 DNA MER2_type 2304 2418 0 37 52 0 0 chr11 94470168 94470226 -54313246 + AT_rich Low_complexity Low_complexity 1 58 0 201 243 57 57 chr11 94470339 94470409 -54313063 + MIR3 SINE MIR 92 161 -47 319 217 58 0 chr11 94470677 94470746 -54312726 + MIR SINE MIR 178 250 -12 287 316 191 23 chr11 94470792 94471007 -54312465 + L3 LINE CR1 1168 1418 -159 1265 247 111 47 chr11 94472021 94472471 -54311001 + MLT2B1 LTR ERVL 1 479 -41 264 290 0 0 chr11 94472471 94472533 -54310939 + (CATA)n Simple_repeat Simple_repeat 1 62 0 718 199 42 47 chr11 94472640 94472831 -54310641 + MSTB1 LTR MaLR 241 430 -2 1847 247 25 5 chr11 94472877 94473435 -54310037 - L1MEc LINE L1 -3172 3043 2475 1297 296 38 14 chr11 94473445 94474239 -54309233 - L1MEc LINE L1 -5495 901 36 438 307 118 0 chr11 94475779 94475932 -54307540 + MIR3 SINE MIR 38 208 0 505 211 78 33 chr11 94478306 94478486 -54304986 - MER53 DNA DNA 0 189 2 396 373 73 27 chr11 94481086 94481346 -54302126 - L2 LINE L2 0 3272 3001 324 284 14 88 chr11 94482011 94482159 -54301313 + MER5A DNA MER1_type 51 187 -2 391 331 75 0 chr11 94482174 94482307 -54301165 - MIR3 SINE MIR -65 143 1 2267 78 0 0 chr11 94482808 94483088 -54300384 + AluSc SINE Alu 1 280 -29 182 28 0 83 chr11 94483088 94483124 -54300348 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 815 285 92 38 chr11 94483753 94484122 -54299350 + L2 LINE L2 2919 3307 -6 369 0 0 0 chr11 94484330 94484371 -54299101 + (TG)n Simple_repeat Simple_repeat 2 42 0 701 324 84 52 chr11 94484560 94485141 -54298331 - L2 LINE L2 -443 2871 2272 225 362 168 13 chr11 94486269 94486418 -54297054 + MIR3 SINE MIR 20 191 -17 226 106 43 0 chr11 94486543 94486590 -54296882 + A-rich Low_complexity Low_complexity 2 50 0 251 146 0 0 chr11 94487008 94487049 -54296423 - L2 LINE L2 -8 3305 3265 2061 136 0 29 chr11 94487051 94487360 -54296112 - AluSx SINE Alu -12 300 1 21 0 0 0 chr11 94487768 94487789 -54295683 + AT_rich Low_complexity Low_complexity 1 21 0 271 359 173 33 chr11 94487979 94488562 -54294910 - L2 LINE L2 -436 2878 2214 183 288 85 0 chr11 94488549 94488608 -54294864 + L2 LINE L2 3193 3256 -57 * 189 74 0 0 chr11 94491009 94491036 -54292436 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1133 200 33 44 chr11 94491041 94491311 -54292161 - AluJo SINE Alu -30 282 16 452 329 69 29 chr11 94491339 94491613 -54291859 + L2 LINE L2 2532 2816 -498 210 362 32 0 chr11 94491681 94491775 -54291697 - L2 LINE L2 -604 2710 2614 279 269 86 11 chr11 94492185 94492278 -54291194 + L3 LINE CR1 1298 1397 -180 258 298 116 25 chr11 94492396 94492517 -54290955 - MIR SINE MIR -61 147 16 430 323 98 6 chr11 94492826 94492990 -54290482 - MIR SINE MIR -82 180 2 220 376 35 0 chr11 94493519 94493604 -54289868 + L2 LINE L2 3185 3272 0 306 0 0 0 chr11 94494096 94494130 -54289342 + (TG)n Simple_repeat Simple_repeat 2 35 0 2203 106 26 0 chr11 94494326 94494628 -54288844 - AluSg SINE Alu 0 310 1 187 352 0 0 chr11 94495530 94495584 -54287888 - L2 LINE L2 -15 3257 3204 225 128 0 0 chr11 94495999 94496046 -54287426 + (A)n Simple_repeat Simple_repeat 1 47 0 203 88 29 0 chr11 94497281 94497315 -54286157 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 328 300 0 12 chr11 94497318 94497398 -54286074 - MIR3 SINE MIR -21 187 109 222 250 0 83 chr11 94497964 94498024 -54285448 + L2 LINE L2 3250 3304 -9 232 239 46 119 chr11 94498475 94498584 -54284888 - L2 LINE L2 -1 3271 3171 290 305 11 11 chr11 94498683 94498778 -54284694 + MER5A DNA MER1_type 95 189 0 221 237 0 34 chr11 94498778 94498835 -54284637 + MIR3 SINE MIR 153 207 -1 205 333 0 0 chr11 94499097 94499157 -54284315 + L2 LINE L2 3211 3270 -2 393 264 70 8 chr11 94499420 94499549 -54283923 - MIR SINE MIR -13 249 113 350 314 65 38 chr11 94500151 94500336 -54283136 - MIR SINE MIR -1 261 72 230 200 0 0 chr11 94500452 94500497 -54282975 + L1ME4a LINE L1 5818 5862 -259 301 269 81 44 chr11 94500516 94500676 -54282796 + L1ME4a LINE L1 5933 6098 -23 373 269 109 23 chr11 94501746 94501865 -54281607 + L2 LINE L2 3033 3140 -132 5955 111 0 0 chr11 94501865 94502862 -54280610 - L1PA13 LINE L1 -1 6162 5156 373 269 109 23 chr11 94502862 94502952 -54280520 + L2 LINE L2 3140 3268 -4 396 0 0 0 chr11 94503600 94503644 -54279828 + (TG)n Simple_repeat Simple_repeat 1 44 0 549 308 28 33 chr11 94503801 94504012 -54279460 + MIR SINE MIR 49 258 -4 4220 147 23 28 chr11 94505499 94506328 -54277144 - L1MC2 LINE L1 -9 6335 5511 530 203 8 24 chr11 94506680 94506803 -54276669 - L1PA16 LINE L1 -16 6150 6030 274 353 38 85 chr11 94506842 94507385 -54276087 + L2 LINE L2 2759 3272 0 12462 116 17 38 chr11 94507406 94509706 -54273766 + L1P3 LINE L1 1 2320 -4141 21 57 0 0 chr11 94509920 94509955 -54273517 + AT_rich Low_complexity Low_complexity 1 35 0 384 22 0 0 chr11 94510253 94510298 -54273174 + (TG)n Simple_repeat Simple_repeat 2 46 0 295 262 36 0 chr11 94510965 94511049 -54272423 - MIR SINE MIR -71 191 105 2638 39 0 3 chr11 94511057 94511366 -54272106 - AluY SINE Alu -3 308 1 805 266 9 17 chr11 94511663 94511900 -54271572 - MIR SINE MIR -1 261 25 1669 175 26 23 chr11 94512342 94512651 -54270821 - AluSx SINE Alu -2 310 1 213 211 0 0 chr11 94512705 94512757 -54270715 + (CATA)n Simple_repeat Simple_repeat 1 52 0 755 226 37 6 chr11 94512840 94513004 -54270468 + MER58A DNA MER1_type 47 215 -9 197 175 18 53 chr11 94514044 94514101 -54269371 + L2 LINE L2 3159 3213 -100 5237 169 32 21 chr11 94514905 94516979 -54266493 - L1MA4A LINE L1 -4 7001 4909 6231 234 78 24 chr11 94516982 94518082 -54265390 - L1MA4A LINE L1 -5278 1571 367 1882 128 68 31 chr11 94518082 94518433 -54265039 + THE1B LTR MaLR 1 364 0 6231 234 78 24 chr11 94518433 94518820 -54264652 - L1MA4A LINE L1 -6482 367 3 48 0 0 0 chr11 94518828 94518876 -54264596 + AT_rich Low_complexity Low_complexity 1 48 0 267 356 0 0 chr11 94519043 94519178 -54264294 + T-rich Low_complexity Low_complexity 1 135 0 22 35 0 0 chr11 94519577 94519606 -54263866 + AT_rich Low_complexity Low_complexity 1 29 0 1816 187 0 0 chr11 94519692 94519991 -54263481 - AluSx SINE Alu -13 299 1 35 54 0 0 chr11 94520115 94520171 -54263301 + AT_rich Low_complexity Low_complexity 1 56 0 1183 278 71 47 chr11 94520867 94521449 -54262023 + L2 LINE L2 2701 3295 -18 42 20 0 0 chr11 94522684 94522733 -54260739 + AT_rich Low_complexity Low_complexity 1 49 0 1994 165 3 29 chr11 94524379 94524725 -54258747 + MER1B DNA MER1_type 1 337 0 1614 271 113 73 chr11 94525029 94526335 -54257137 + HAL1 LINE L1 101 1459 -1048 258 192 0 0 chr11 94526349 94526401 -54257071 + GA-rich Low_complexity Low_complexity 1 52 0 237 211 0 53 chr11 94526448 94526524 -54256948 + L1M4 LINE L1 4488 4559 -1587 603 333 22 0 chr11 94526567 94526750 -54256722 + L2 LINE L2 2874 3060 -212 336 311 106 8 chr11 94526949 94527081 -54256391 + L2 LINE L2 3164 3308 -5 300 53 0 0 chr11 94527787 94527825 -54255647 + (T)n Simple_repeat Simple_repeat 1 38 0 218 412 24 6 chr11 94528455 94528620 -54254852 - MIR SINE MIR -35 227 60 2371 252 48 19 chr11 94529070 94529658 -54253814 - L1PA13 LINE L1 -5420 1367 763 2352 189 19 23 chr11 94529684 94530213 -54253259 - L1M4c LINE L1 -4728 1656 1130 267 353 83 13 chr11 94530530 94530686 -54252786 + MIR3 SINE MIR 33 199 -9 276 391 21 36 chr11 94530976 94531168 -54252304 + MIR3 SINE MIR 19 207 -1 263 294 42 56 chr11 94531836 94531979 -54251493 - MIR SINE MIR -51 211 71 21415 180 25 20 chr11 94532455 94532828 -54250644 - L1PA11 LINE L1 -2 7610 7240 2173 132 42 20 chr11 94532828 94533184 -54250288 + THE1B LTR MaLR 1 364 0 21415 180 25 20 chr11 94533184 94539056 -54244416 - L1PA11 LINE L1 -372 7240 6 21 71 0 0 chr11 94539905 94539947 -54243525 + AT_rich Low_complexity Low_complexity 1 42 0 522 294 85 0 chr11 94540831 94541008 -54242464 - MIR SINE MIR -1 261 70 1824 158 6 22 chr11 94541395 94541712 -54241760 + AluJb SINE Alu 1 312 0 282 282 69 46 chr11 94541738 94541869 -54241603 + MIR SINE MIR 20 153 -109 247 326 11 11 chr11 94542407 94542502 -54240970 + MIR3 SINE MIR 105 199 -9 277 355 46 13 chr11 94544080 94544232 -54239240 - MER5A DNA MER1_type -23 166 10 180 319 0 0 chr11 94544698 94544745 -54238727 + L3 LINE CR1 1514 1560 -17 771 302 25 0 chr11 94546227 94546429 -54237043 + MIR SINE MIR 17 223 -39 1914 256 48 37 chr11 94546512 94547023 -54236449 + L1MC4a LINE L1 6956 7481 -327 1815 148 70 22 chr11 94547023 94547381 -54236091 - THE1C LTR MaLR 0 375 1 1914 256 48 37 chr11 94547381 94547658 -54235814 + L1MC4a LINE L1 7481 7753 -55 22 0 0 0 chr11 94548604 94548626 -54234846 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr11 94548694 94548723 -54234749 + AT_rich Low_complexity Low_complexity 1 29 0 8196 165 24 5 chr11 94550177 94551654 -54231818 - Tigger1 DNA MER2_type -662 1756 252 2184 150 62 5 chr11 94551658 94552078 -54231394 + L1MA6 LINE L1 5766 6209 -91 692 227 62 0 chr11 94552076 94552270 -54231202 + L1ME1 LINE L1 5369 5574 -785 * 1505 185 6 52 chr11 94552352 94552677 -54230795 + AluJb SINE Alu 3 312 0 1210 53 0 0 chr11 94552684 94552836 -54230636 + L1PA3 LINE L1 6004 6155 0 363 206 64 77 chr11 94552852 94553020 -54230452 + L1ME1 LINE L1 5595 5764 -476 1065 263 63 16 chr11 94553514 94553895 -54229577 + L1ME1 LINE L1 5750 6148 -18 370 191 35 26 chr11 94554080 94554212 -54229260 + L1M4 LINE L1 5209 5346 -828 33 0 0 0 chr11 94554242 94554275 -54229197 + AT_rich Low_complexity Low_complexity 1 33 0 431 281 111 12 chr11 94555611 94555782 -54227690 + MIR SINE MIR 20 207 -55 31 0 0 0 chr11 94555960 94555991 -54227481 + AT_rich Low_complexity Low_complexity 1 31 0 1711 169 17 7 chr11 94556782 94557121 -54226351 + AluSx SINE Alu 2 312 0 2218 76 0 31 chr11 94557123 94557414 -54226058 + AluY SINE Alu 17 298 -13 26 0 0 0 chr11 94557471 94557497 -54225975 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr11 94557565 94557588 -54225884 + AT_rich Low_complexity Low_complexity 1 23 0 2408 116 19 14 chr11 94557599 94557961 -54225511 + THE1B LTR MaLR 1 364 0 9017 138 77 5 chr11 94557961 94559434 -54224038 + THE1B-int LTR MaLR 1 1580 0 2387 133 17 11 chr11 94559434 94559796 -54223676 + THE1B LTR MaLR 1 364 0 33 73 0 0 chr11 94559895 94559963 -54223509 + AT_rich Low_complexity Low_complexity 1 68 0 243 0 0 0 chr11 94560288 94560315 -54223157 + (T)n Simple_repeat Simple_repeat 1 27 0 3983 145 10 2 chr11 94560524 94561131 -54222341 + LTR9 LTR ERV1 1 612 0 26113 141 111 112 chr11 94561136 94568083 -54215389 + HUERS-P3b LTR ERV1 5 6946 -472 799 175 18 6 chr11 94568088 94568259 -54215213 + LTR9-int LTR ERV1 2388 2560 -2455 433 181 105 0 chr11 94568265 94568370 -54215102 + LTR9-int LTR ERV1 4203 4318 -562 1389 126 5 0 chr11 94568529 94568727 -54214745 + LTR9-int LTR ERV1 8720 8918 -1 4088 144 3 0 chr11 94568727 94569337 -54214135 + LTR9 LTR ERV1 1 612 0 1243 236 22 42 chr11 94569526 94569882 -54213590 + MLT1A1 LTR MaLR 15 363 -2 200 311 95 0 chr11 94570233 94570307 -54213165 + MIR SINE MIR 72 152 -110 300 239 30 0 chr11 94570683 94570750 -54212722 - L2 LINE L2 -8 3305 3237 232 349 19 28 chr11 94570986 94571092 -54212380 - MIR SINE MIR -145 117 13 1012 211 140 99 chr11 94571300 94571794 -54211678 - MLT2B2 LTR ERVL -1 514 1 795 260 39 10 chr11 94572390 94572594 -54210878 + MER20 DNA MER1_type 2 211 -8 1510 177 50 106 chr11 94572795 94573275 -54210197 - MLT1C LTR MaLR -7 460 8 209 294 59 12 chr11 94573286 94573371 -54210101 + MIR SINE MIR 100 188 -74 189 74 0 0 chr11 94573485 94573512 -54209960 + (CA)n Simple_repeat Simple_repeat 2 28 0 794 262 35 0 chr11 94575065 94575267 -54208205 + MER63A DNA MER1_type 2 210 0 191 374 0 12 chr11 94575488 94575571 -54207901 - L2 LINE L2 -4 3268 3187 198 244 77 39 chr11 94576010 94576088 -54207384 + MIR3 SINE MIR 83 163 -45 317 354 101 5 chr11 94576096 94576305 -54207167 - MIR SINE MIR 0 262 34 206 118 0 0 chr11 94576997 94577031 -54206441 + (T)n Simple_repeat Simple_repeat 1 34 0 659 325 48 12 chr11 94577063 94577315 -54206157 + MIR SINE MIR 2 262 0 630 267 65 94 chr11 94577355 94577523 -54205949 - L2 LINE L2 0 3313 3142 2294 105 10 0 chr11 94577523 94577829 -54205643 + AluSg SINE Alu 1 309 -1 630 267 65 94 chr11 94577829 94578153 -54205319 - L2 LINE L2 -171 3142 2822 2792 194 15 7 chr11 94578153 94578746 -54204726 + L1PB4 LINE L1 5550 6147 -9 630 267 65 94 chr11 94578746 94578837 -54204635 - L2 LINE L2 -491 2822 2730 21 0 0 0 chr11 94579193 94579214 -54204258 + AT_rich Low_complexity Low_complexity 1 21 0 2008 135 7 0 chr11 94580164 94580489 -54202983 - AluSx SINE Alu 0 329 3 290 273 65 43 chr11 94581567 94581706 -54201766 + MIR SINE MIR 75 216 -46 377 308 74 21 chr11 94581866 94582095 -54201377 + MIR SINE MIR 3 260 -2 606 269 93 40 chr11 94633113 94633488 -54149984 - L1MC/D LINE L1 -2001 5807 5413 573 151 9 19 chr11 94633491 94633597 -54149875 - FLAM_C SINE Alu 0 143 39 1988 102 7 7 chr11 94634452 94634735 -54148737 + AluSg SINE Alu 28 310 0 1771 209 60 12 chr11 94634742 94635144 -54148328 - MER54A LTR ERVL -90 811 391 216 0 0 0 chr11 94635245 94635269 -54148203 + (A)n Simple_repeat Simple_repeat 1 24 0 233 162 0 0 chr11 94635632 94635669 -54147803 + MLT2C2 LTR ERVL 52 88 -326 1661 148 24 10 chr11 94635670 94635967 -54147505 - AluJb SINE Alu -11 301 1 732 215 16 84 chr11 94635967 94636158 -54147314 + MLT2C2 LTR ERVL 280 457 -7 189 301 165 23 chr11 94636388 94636521 -54146951 + L2 LINE L2 2940 3091 -181 1576 113 13 4 chr11 94636561 94636790 -54146682 - AluSx SINE Alu -73 239 9 756 211 61 19 chr11 94636828 94637044 -54146428 + MER34B LTR ERV1 12 220 -345 286 330 161 0 chr11 94637224 94637342 -54146130 - MIR SINE MIR -104 158 22 1915 139 10 3 chr11 94637708 94638002 -54145470 + AluSg SINE Alu 1 296 -14 789 129 0 50 chr11 94638015 94638155 -54145317 + AluJo/FLAM SINE Alu 1 133 -169 2051 127 7 0 chr11 94638158 94638450 -54145022 + AluSx SINE Alu 1 294 -18 261 136 76 61 chr11 94638450 94638516 -54144956 + L1ME3A LINE L1 6099 6165 -5 1560 168 7 34 chr11 94638677 94638975 -54144497 - AluJb SINE Alu -7 305 16 1905 230 64 18 chr11 94639138 94639747 -54143725 + L1ME2 LINE L1 5522 6158 -6 614 293 73 70 chr11 94639768 94639927 -54143545 + HAL1 LINE L1 1045 1202 -1305 536 212 146 0 chr11 94639927 94640092 -54143380 + MER5A DNA MER1_type 1 189 0 614 293 73 70 chr11 94640092 94640189 -54143283 + HAL1 LINE L1 1202 1297 -1210 2407 67 3 0 chr11 94640189 94640488 -54142984 - AluY SINE Alu -10 301 2 614 293 73 70 chr11 94640488 94641084 -54142388 + HAL1 LINE L1 1297 1900 -607 1996 167 3 3 chr11 94641349 94641703 -54141769 - MER46B DNA MER2_type 0 236 8 291 316 114 0 chr11 94642195 94642309 -54141163 - MIR SINE MIR -56 206 80 184 231 92 31 chr11 94642692 94642757 -54140715 - MIR SINE MIR -23 239 171 * 324 354 35 9 chr11 94642744 94642857 -54140615 - L2 LINE L2 -5 3308 3193 290 354 25 50 chr11 94642889 94643050 -54140422 - MIR SINE MIR -88 174 18 505 356 55 20 chr11 94643156 94643409 -54140063 - MIR SINE MIR 0 262 1 343 182 23 68 chr11 94644514 94644602 -54138870 + MIR3 SINE MIR 112 195 -13 214 333 0 0 chr11 94645454 94645520 -54137952 + (CAG)n Simple_repeat Simple_repeat 2 67 0 341 307 64 26 chr11 94645659 94645852 -54137620 - MIR SINE MIR -29 233 28 458 273 23 0 chr11 94645925 94646053 -54137419 - MIR SINE MIR -84 178 48 275 279 291 11 chr11 94646860 94647039 -54136433 + MIR SINE MIR 34 262 0 236 230 93 50 chr11 94647756 94647895 -54135577 + MIR SINE MIR 80 224 -38 361 396 54 48 chr11 94648370 94648686 -54134786 - L2 LINE L2 -40 3232 2915 240 35 0 0 chr11 94648870 94648899 -54134573 + (CA)n Simple_repeat Simple_repeat 2 30 0 276 0 68 0 chr11 94649220 94649264 -54134208 + (TA)n Simple_repeat Simple_repeat 1 47 0 186 176 59 118 chr11 94649299 94649316 -54134156 + L2 LINE L2 1327 1343 -1971 2148 152 36 14 chr11 94649316 94649672 -54133800 + THE1B LTR MaLR 1 364 0 186 176 59 118 chr11 94649672 94649739 -54133733 + L2 LINE L2 1343 1406 -1908 740 306 96 3 chr11 94649773 94650087 -54133385 + L2 LINE L2 1525 1867 -1447 1027 132 77 0 chr11 94650127 94650309 -54133163 + MER2 DNA MER2_type 2 197 -148 1097 310 232 20 chr11 94650421 94651546 -54131926 + L2 LINE L2 1949 3306 -7 6034 195 27 6 chr11 94651667 94653080 -54130392 + L1MA2 LINE L1 2172 3614 -2532 1151 150 52 0 chr11 94653082 94653307 -54130165 - AluSg/x SINE Alu 0 335 102 644 102 0 0 chr11 94653310 94653398 -54130074 + AluSg/x SINE Alu 210 297 -12 556 167 0 0 chr11 94653413 94653497 -54129975 - AluS SINE Alu -229 84 1 2848 190 14 46 chr11 94653502 94654213 -54129259 + L1MA2 LINE L1 3614 4301 -1845 1657 78 13 0 chr11 94654198 94654429 -54129043 - L1PA13 LINE L1 -281 5882 5649 * 1585 131 22 8 chr11 94654431 94654698 -54128774 + L1PA13 LINE L1 5890 6160 -3 5864 152 39 7 chr11 94654704 94656684 -54126788 + L1MA2 LINE L1 4257 6288 -16 236 160 40 27 chr11 94656706 94656781 -54126691 + (TA)n Simple_repeat Simple_repeat 2 77 0 3244 130 25 4 chr11 94656781 94657506 -54125966 - L1P4 LINE L1 -377 5789 5051 1749 103 0 0 chr11 94657508 94657731 -54125741 - AluSg SINE Alu -20 292 70 331 176 188 0 chr11 94657731 94657816 -54125656 + L1MD2 LINE L1 5944 6044 -315 2346 79 0 19 chr11 94657817 94658133 -54125339 + AluY SINE Alu 1 310 -1 215 213 0 0 chr11 94658255 94658302 -54125170 + GA-rich Low_complexity Low_complexity 2 48 0 1795 205 18 24 chr11 94658434 94658892 -54124580 + MER66-int LTR ERV1 428 882 -5794 234 91 0 0 chr11 94658984 94659017 -54124455 + (A)n Simple_repeat Simple_repeat 1 33 0 590 78 0 0 chr11 94659020 94659097 -54124375 - AluSg SINE Alu -233 77 1 429 232 73 20 chr11 94659118 94659369 -54124103 + L1MC4 LINE L1 7098 7556 -486 225 226 39 108 chr11 94659371 94659473 -54123999 - L1M4 LINE L1 -1785 4361 4267 343 225 8 33 chr11 94659522 94659642 -54123830 - L1M4 LINE L1 -2131 4015 3899 41474 41 6 2 chr11 94659663 94665787 -54117685 + L1PA3 LINE L1 12 6155 0 308 148 37 0 chr11 94665908 94665962 -54117510 - L1MD1 LINE L1 -44 6198 6143 3221 174 118 26 chr11 94665967 94666122 -54117350 - L1MD2 LINE L1 -147 6212 6073 2544 69 0 0 chr11 94666122 94666426 -54117046 - AluY SINE Alu -6 305 2 3221 174 118 26 chr11 94666426 94667131 -54116341 - L1MD2 LINE L1 -286 6073 5272 726 252 90 7 chr11 94667197 94667487 -54115985 - L1ME LINE L1 -463 5707 5394 394 265 33 33 chr11 94667538 94667689 -54115783 - L1ME LINE L1 -890 5256 5106 1644 123 0 0 chr11 94667794 94668038 -54115434 - MLT2A2 LTR ERVL 0 453 210 37 0 0 0 chr11 94668382 94668419 -54115053 + AT_rich Low_complexity Low_complexity 1 37 0 943 272 11 11 chr11 94668490 94668769 -54114703 - L1MC4 LINE L1 -1032 7010 6732 231 274 0 24 chr11 94668819 94668903 -54114569 - L1MC4a LINE L1 -1242 6566 6485 472 323 119 48 chr11 94669182 94669643 -54113829 - L1ME LINE L1 -2275 3871 3378 1049 235 50 32 chr11 94669825 94670225 -54113247 - L1ME1 LINE L1 -4 6162 5756 250 207 73 0 chr11 94670236 94670318 -54113154 - L1ME1 LINE L1 -805 5361 5274 235 362 92 7 chr11 94671299 94671440 -54112032 - L2 LINE L2 -18 3254 3102 186 250 0 23 chr11 94671471 94671515 -54111957 - L2 LINE L2 -238 3034 2992 2080 158 12 47 chr11 94672527 94672834 -54110638 - MLT1B LTR MaLR 0 390 98 1377 181 52 4 chr11 94672834 94673140 -54110332 + AluJb SINE Alu 1 319 0 2080 158 12 47 chr11 94673140 94673235 -54110237 - MLT1B LTR MaLR -292 98 1 204 333 70 62 chr11 94675587 94675716 -54107756 + L2 LINE L2 3127 3256 -16 1910 84 24 11 chr11 94675803 94676188 -54107284 + LTR7 LTR ERV1 1 442 -8 14089 107 6 24 chr11 94676197 94678996 -54104476 + HERVH LTR ERV1 1 2995 -4718 12137 110 14 35 chr11 94678975 94681030 -54102442 + HERVH LTR ERV1 3140 5149 -2564 * 1292 120 19 0 chr11 94681031 94681247 -54102225 + HERVH LTR ERV1 5600 5819 -1894 2222 93 68 0 chr11 94681247 94681612 -54101860 + HERVH LTR ERV1 7324 7713 0 2780 70 92 12 chr11 94681612 94682027 -54101445 + LTR7 LTR ERV1 1 448 -2 618 86 0 11 chr11 94682029 94682122 -54101350 + HERVH LTR ERV1 1 92 -7621 340 104 0 0 chr11 94682122 94682170 -54101302 + LTR7 LTR ERV1 395 442 -8 247 266 0 0 chr11 94683155 94683219 -54100253 + L1ME LINE L1 377 440 -5956 759 208 35 0 chr11 94683408 94683581 -54099891 - MER96B DNA MER1_type? -238 179 1 1197 250 76 42 chr11 94683845 94684235 -54099237 + L1ME LINE L1 792 1213 -5193 2122 129 7 3 chr11 94684235 94684544 -54098928 + AluSp SINE Alu 1 310 -3 1197 250 76 42 chr11 94684544 94684807 -54098665 + L1ME LINE L1 1213 1466 -4940 310 193 45 23 chr11 94685305 94685393 -54098079 + L1MC4 LINE L1 6614 6703 -1339 674 124 10 66 chr11 94685423 94685740 -54097732 + (TA)n Simple_repeat Simple_repeat 1 299 0 311 244 35 12 chr11 94685743 94685829 -54097643 + L1MC4 LINE L1 6616 6703 -1339 22 0 0 0 chr11 94686134 94686156 -54097316 + AT_rich Low_complexity Low_complexity 1 22 0 299 340 84 21 chr11 94686267 94686458 -54097014 + MIR SINE MIR 8 210 -52 245 338 97 60 chr11 94686906 94687175 -54096297 - L2 LINE L2 -87 3185 2907 218 200 160 0 chr11 94687328 94687378 -54096094 + MIR SINE MIR 82 139 -69 867 203 0 6 chr11 94687439 94687597 -54095875 + FAM SINE Alu 9 165 -20 205 191 0 0 chr11 94688258 94688300 -54095172 + T-rich Low_complexity Low_complexity 2 43 0 208 338 139 46 chr11 94688525 94688676 -54094796 - L2 LINE L2 -1 3271 3107 2232 82 0 0 chr11 94688865 94689208 -54094264 + AluY SINE Alu 1 343 0 452 283 106 58 chr11 94689690 94689916 -54093556 + MIR SINE MIR 20 256 -6 282 333 53 0 chr11 94690046 94690160 -54093312 + L2 LINE L2 3111 3230 -42 679 266 83 12 chr11 94691351 94691592 -54091880 + MIR SINE MIR 3 260 -2 308 313 52 0 chr11 94691967 94692063 -54091409 - L2 LINE L2 -8 3305 3205 2838 10 0 0 chr11 94692141 94692450 -54091022 - AluYa5 SINE Alu -2 309 1 407 290 28 28 chr11 94693187 94693294 -54090178 - MIR SINE MIR -86 122 16 788 190 82 0 chr11 94693294 94693452 -54090020 - MER20 DNA MER1_type -1 218 48 273 384 40 0 chr11 94693791 94693942 -54089530 - MIR SINE MIR -84 178 22 2010 138 32 35 chr11 94694775 94695151 -54088321 + THE1C LTR MaLR 1 375 0 341 330 10 0 chr11 94695359 94695459 -54088013 + MIR SINE MIR 32 132 -76 288 218 58 11 chr11 94695574 94695661 -54087811 + L1MC5 LINE L1 7826 7916 -45 2379 124 23 0 chr11 94696236 94696590 -54086882 + THE1B LTR MaLR 2 363 -1 628 260 59 34 chr11 94696915 94697119 -54086353 + MLT1J2 LTR MaLR 5 213 -237 482 269 60 13 chr11 94697150 94697299 -54086173 + MLT1J2 LTR MaLR 281 436 -14 310 370 42 0 chr11 94697480 94697599 -54085873 - L2 LINE L2 -8 3305 3182 380 277 63 44 chr11 94698256 94698415 -54085057 + MIR SINE MIR 51 212 -50 258 385 42 7 chr11 94699254 94699397 -54084075 + MIR SINE MIR 2 149 -113 585 244 112 0 chr11 94699450 94699647 -54083825 - L1ME2 LINE L1 -9 6155 5937 214 275 25 38 chr11 94699663 94699743 -54083729 + MIR SINE MIR 184 262 0 323 255 55 110 chr11 94699955 94700155 -54083317 - MIR SINE MIR -71 191 3 207 333 160 0 chr11 94700177 94700333 -54083139 - MIR SINE MIR -6 256 76 1509 67 72 0 chr11 94700371 94700579 -54082893 + L1PA8 LINE L1 5937 6159 -13 343 282 0 0 chr11 94700579 94700664 -54082808 - L1MC4 LINE L1 -1342 6700 6616 21 0 0 0 chr11 94700670 94700691 -54082781 + AT_rich Low_complexity Low_complexity 1 21 0 4504 131 107 146 chr11 94701535 94703141 -54080331 + pTR5 LTR ERV1 738 2438 0 2912 277 67 63 chr11 94703357 94703906 -54079566 + L1ME1 LINE L1 17 562 -6293 252 0 0 0 chr11 94703906 94703934 -54079538 + (CA)n Simple_repeat Simple_repeat 2 29 0 2912 277 67 63 chr11 94703934 94705263 -54078209 + L1ME1 LINE L1 562 1904 -4951 306 267 138 19 chr11 94705270 94705480 -54077992 + L1ME1 LINE L1 3654 3888 -3053 * 6696 175 40 17 chr11 94705478 94706807 -54076665 + L1MA6 LINE L1 1239 2602 -4065 5018 202 50 20 chr11 94706857 94708260 -54075212 + L1MA6 LINE L1 3041 4508 -3057 1809 191 0 0 chr11 94708260 94708569 -54074903 + AluSx SINE Alu 1 309 -3 5018 202 50 20 chr11 94708569 94708912 -54074560 + L1MA6 LINE L1 4508 4839 -2726 * 5449 184 29 70 chr11 94708908 94709333 -54074139 + L1MA6 LINE L1 5379 5820 -1899 2044 114 22 35 chr11 94709333 94709648 -54073824 + AluSx SINE Alu 1 311 -1 5449 184 29 70 chr11 94709648 94710626 -54072846 + L1MA6 LINE L1 5820 6640 -1079 180 0 0 0 chr11 94710626 94710646 -54072826 + (CAT)n Simple_repeat Simple_repeat 3 22 0 5449 184 29 70 chr11 94710646 94711680 -54071792 + L1MA6 LINE L1 6640 7714 -5 3770 281 52 16 chr11 94711684 94713378 -54070094 + L1ME1 LINE L1 3869 5623 -1318 320 174 0 14 chr11 94713488 94713557 -54069915 + GA-rich Low_complexity Low_complexity 1 68 0 1145 227 106 25 chr11 94713612 94714009 -54069463 + L1ME1 LINE L1 6072 6500 -461 1428 225 54 56 chr11 94714009 94714471 -54069001 - MLT1C LTR MaLR 0 467 7 1337 222 70 21 chr11 94714475 94714862 -54068610 + L1ME1 LINE L1 6494 6899 -62 2149 287 46 7 chr11 94715119 94715937 -54067535 + L2 LINE L2 2308 3156 -157 459 218 52 52 chr11 94715975 94716149 -54067323 + MER104 DNA Tc2 5 178 -2 402 268 16 24 chr11 94716174 94716215 -54067257 + L2 LINE L2 3172 3212 -101 1361 200 31 83 chr11 94716215 94716600 -54066872 + MLT1A1 LTR MaLR 1 365 0 402 268 16 24 chr11 94716600 94716685 -54066787 + L2 LINE L2 3212 3297 -16 309 314 107 16 chr11 94717407 94717528 -54065944 + L2 LINE L2 3136 3267 -5 294 233 68 30 chr11 94717618 94717751 -54065721 - LTR33 LTR ERVL -3 518 381 243 352 0 23 chr11 94718037 94718125 -54065347 - MIR SINE MIR -145 117 32 856 234 21 11 chr11 94718303 94718491 -54064981 + MER58A DNA MER1_type 20 209 -15 574 286 79 11 chr11 94718605 94718783 -54064689 + MIR SINE MIR 2 191 -71 638 146 45 0 chr11 94719962 94720070 -54063402 - MSTA LTR MaLR 0 428 316 1229 239 90 47 chr11 94720070 94720510 -54062962 - MER66A LTR ERV1 0 478 97 1493 204 36 0 chr11 94720581 94720855 -54062617 - MER66A-int LTR ERV1 -3 6673 6390 * 1514 190 41 30 chr11 94720845 94721225 -54062247 - MER66A-int LTR ERV1 -1580 6176 4582 342 262 37 47 chr11 94721253 94721360 -54062112 - MER4D LTR ERV1 -712 160 55 1163 162 10 90 chr11 94721360 94721698 -54061774 - MER66A-int LTR ERV1 -2251 4425 3475 2436 202 9 11 chr11 94721796 94722257 -54061215 - MER66A-int LTR ERV1 -3871 2805 2346 * 7024 199 48 36 chr11 94722255 94724347 -54059125 - MER66A-int LTR ERV1 -4507 2169 1 1031 212 74 91 chr11 94724347 94724802 -54058670 - MER66A LTR ERV1 0 478 96 451 205 16 41 chr11 94724880 94725002 -54058470 - MSTB LTR MaLR -109 317 199 1193 212 4 34 chr11 94725018 94725254 -54058218 - MSTB LTR MaLR -197 229 1 29 47 0 0 chr11 94725287 94725330 -54058142 + AT_rich Low_complexity Low_complexity 1 43 0 795 229 68 7 chr11 94725863 94726088 -54057384 + L1MB8 LINE L1 5886 6127 -51 444 345 55 5 chr11 94726146 94726346 -54057126 + L2 LINE L2 2587 2796 -518 4330 275 167 32 chr11 94726852 94729193 -54054279 + L2 LINE L2 606 3267 -46 204 200 0 0 chr11 94729244 94729304 -54054168 + GA-rich Low_complexity Low_complexity 2 61 0 32 26 0 0 chr11 94729384 94729423 -54054049 + AT_rich Low_complexity Low_complexity 1 39 0 270 27 27 0 chr11 94729546 94729583 -54053889 - L1M1 LINE L1 -524 5780 5743 363 312 129 0 chr11 94730853 94731023 -54052449 + MIR SINE MIR 26 217 -45 202 362 58 14 chr11 94731063 94731201 -54052271 + MIR3 SINE MIR 43 186 -22 48 18 0 0 chr11 94732409 94732464 -54051008 + AT_rich Low_complexity Low_complexity 1 55 0 220 333 21 10 chr11 94732476 94732572 -54050900 - MIR SINE MIR -34 228 132 767 101 18 0 chr11 94732581 94732690 -54050782 + HY1 scRNA scRNA 1 111 -1 479 308 112 14 chr11 94733776 94734124 -54049348 + L1ME4a LINE L1 5517 5898 -223 25 102 0 0 chr11 94734374 94734462 -54049010 + AT_rich Low_complexity Low_complexity 1 88 0 245 242 0 0 chr11 94734611 94734673 -54048799 + MIR SINE MIR 198 259 -3 206 238 139 40 chr11 94734692 94734793 -54048679 - MIR SINE MIR -75 187 77 1259 263 96 5 chr11 94734811 94735237 -54048235 - MLT1J LTR MaLR -46 465 1 235 366 0 0 chr11 94735237 94735319 -54048153 - MIR SINE MIR -149 113 32 576 322 130 31 chr11 94735911 94736265 -54047207 + MLT1J2 LTR MaLR 62 450 0 702 216 23 29 chr11 94736266 94736437 -54047035 + LTR41 LTR ERVL 1 170 -603 468 245 11 133 chr11 94736639 94736925 -54046547 + LTR41 LTR ERVL 510 760 -13 527 271 133 19 chr11 94737042 94737252 -54046220 + MIR SINE MIR 15 248 -14 263 307 0 13 chr11 94738304 94738379 -54045093 - MLT1K LTR MaLR -348 240 167 231 188 94 16 chr11 94738462 94738526 -54044946 + MIR SINE MIR 123 191 -71 634 242 57 13 chr11 94739705 94739932 -54043540 - L1MB8 LINE L1 0 6178 5942 254 236 28 0 chr11 94740034 94740106 -54043366 - MIR SINE MIR -1 261 188 9817 99 8 18 chr11 94740137 94741716 -54041756 - L1P LINE L1 -2922 3224 1662 6959 55 6 6 chr11 94741716 94743117 -54040355 + L1PA7 LINE L1 4731 6146 -8 2254 121 10 0 chr11 94743127 94743434 -54040038 + AluSg SINE Alu 1 310 0 739 187 0 15 chr11 94743448 94743582 -54039890 + AluSq/x SINE Alu 1 132 -180 748 337 58 22 chr11 94743697 94744201 -54039271 - HERV16 LTR ERVL -461 5303 4782 880 344 53 38 chr11 94744313 94745100 -54038372 - HERV16 LTR ERVL -3655 1341 543 1487 80 0 0 chr11 94745187 94745384 -54038088 + AluSc SINE Alu 103 299 0 204 40 0 0 chr11 94745385 94745410 -54038062 + (TA)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr11 94745884 94745907 -54037565 + AT_rich Low_complexity Low_complexity 1 23 0 658 289 89 34 chr11 94747149 94747530 -54035942 + MLT1I LTR MaLR 1 402 -7 216 271 0 0 chr11 94748295 94748354 -54035118 + MIR SINE MIR 110 168 -94 284 341 38 15 chr11 94749056 94749188 -54034284 - MIR SINE MIR -108 154 20 702 261 73 30 chr11 94750245 94750479 -54032993 + MIR SINE MIR 9 252 -10 364 280 29 9 chr11 94750503 94750644 -54032828 - MIR3 SINE MIR -54 154 44 200 264 132 11 chr11 94751478 94751569 -54031903 - MIR SINE MIR -72 190 89 386 299 22 29 chr11 94751706 94751843 -54031629 - MER5B DNA MER1_type -6 172 37 508 100 100 0 chr11 94751851 94751941 -54031531 + L1PA16 LINE L1 6059 6157 -9 22 70 0 0 chr11 94751948 94751991 -54031481 + AT_rich Low_complexity Low_complexity 1 43 0 491 299 66 6 chr11 94752745 94752946 -54030526 - MIR SINE MIR -30 232 21 396 295 16 8 chr11 94753482 94753604 -54029868 - MIR3 SINE MIR -4 204 82 221 272 65 43 chr11 94753806 94753898 -54029574 + L2 LINE L2 3204 3297 -16 343 219 0 0 chr11 94753983 94754047 -54029425 - MIR SINE MIR -127 135 72 2348 74 3 0 chr11 94754163 94754459 -54029013 - AluY SINE Alu -14 297 1 21 0 0 0 chr11 94754620 94754641 -54028831 + AT_rich Low_complexity Low_complexity 1 21 0 554 254 17 40 chr11 94755121 94755294 -54028178 - MIR SINE MIR 0 262 94 198 330 155 10 chr11 94755469 94755663 -54027809 + MIR SINE MIR 1 222 -40 384 286 182 23 chr11 94755696 94755916 -54027556 + L2 LINE L2 2994 3248 -24 2682 34 2 0 chr11 94756781 94757153 -54026319 + L1P LINE L1 5050 5422 -733 248 241 19 0 chr11 94757444 94757498 -54025974 - L2 LINE L2 0 3313 3259 5106 47 0 0 chr11 94758172 94758837 -54024635 - L1P LINE L1 -851 5295 4631 3803 53 6 2 chr11 94758837 94759312 -54024160 + L1PA5 LINE L1 5678 6154 0 473 286 21 47 chr11 94759328 94759520 -54023952 + MIR SINE MIR 58 244 -18 352 348 9 0 chr11 94760722 94760837 -54022635 + MIR SINE MIR 30 145 -63 24 32 0 0 chr11 94761680 94761711 -54021761 + AT_rich Low_complexity Low_complexity 1 31 0 2070 126 0 11 chr11 94761957 94762271 -54021201 + AluSx SINE Alu 1 311 0 22 35 0 0 chr11 94762437 94762466 -54021006 + AT_rich Low_complexity Low_complexity 1 29 0 560 339 112 29 chr11 94763128 94763503 -54019969 + L3 LINE CR1 358 763 -814 307 298 118 0 chr11 94763525 94763703 -54019769 + L1ME LINE L1 5530 5728 -393 313 260 0 26 chr11 94764168 94764245 -54019227 + 5S rRNA rRNA 2 76 -45 342 207 155 43 chr11 94764303 94764419 -54019053 + MLT1E3 LTR MaLR 1 129 -525 1500 231 5 50 chr11 94764452 94764829 -54018643 + MLT1E3 LTR MaLR 258 617 -7 389 274 85 15 chr11 94764844 94765045 -54018427 + MLT1J LTR MaLR 293 507 -4 2206 128 0 3 chr11 94765053 94765357 -54018115 - AluSp SINE Alu -10 303 1 937 320 60 25 chr11 94765388 94765819 -54017653 + L3 LINE CR1 748 1193 -384 218 254 107 33 chr11 94766451 94766573 -54016899 + MIR3 SINE MIR 49 179 -29 * 1806 271 80 60 chr11 94766517 94766836 -54016636 + L2 LINE L2 2095 2406 -907 2060 134 0 7 chr11 94766836 94767141 -54016331 - AluSx SINE Alu -9 303 1 1806 271 80 60 chr11 94767141 94768031 -54015441 + L2 LINE L2 2406 3313 0 404 307 170 68 chr11 94769181 94769856 -54013616 + HAL1 LINE L1 85 828 -1679 1381 280 123 17 chr11 94769874 94770817 -54012655 + HAL1 LINE L1 875 1917 -590 306 248 119 37 chr11 94770910 94771128 -54012344 + HAL1 LINE L1 2115 2350 -157 696 277 33 0 chr11 94771153 94771337 -54012135 + MIR SINE MIR 37 225 -37 2419 68 0 7 chr11 94771374 94771682 -54011790 - AluY SINE Alu -5 306 1 312 290 110 32 chr11 94772054 94772209 -54011263 + L2 LINE L2 3147 3313 0 237 309 158 33 chr11 94772240 94772404 -54011068 + MER5A DNA MER1_type 1 189 0 268 306 76 32 chr11 94773125 94773282 -54010190 - L2 LINE L2 -166 3106 2943 309 301 66 29 chr11 94773497 94773633 -54009839 - L2 LINE L2 -943 2371 2231 980 145 17 98 chr11 94773825 94774060 -54009412 + MER20 DNA MER1_type 3 218 -1 219 331 70 25 chr11 94774302 94774459 -54009013 + L2 LINE L2 2852 3015 -257 288 336 179 0 chr11 94774847 94774981 -54008491 + MIR SINE MIR 82 239 -23 412 353 49 16 chr11 94775703 94775887 -54007585 + MIR SINE MIR 38 227 -35 937 222 16 0 chr11 94775937 94776126 -54007346 - MER58A DNA MER1_type -23 201 10 553 266 12 24 chr11 94776934 94777103 -54006369 - LTR67 LTR ERVL -389 168 2 2041 104 13 19 chr11 94777737 94778045 -54005427 - AluSq SINE Alu -7 306 1 357 231 128 8 chr11 94778374 94778491 -54004981 + MER94 DNA DNA 2 132 -2 329 259 149 55 chr11 94779691 94779892 -54003580 + L2 LINE L2 3081 3300 -13 192 40 0 0 chr11 94779892 94779917 -54003555 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 2393 90 0 3 chr11 94780209 94780519 -54002953 + AluY SINE Alu 1 309 -2 255 342 13 0 chr11 94781261 94781340 -54002132 + L2 LINE L2 3191 3270 -43 306 241 127 0 chr11 94781932 94782011 -54001461 + MIR SINE MIR 156 244 -18 182 242 229 32 chr11 94782034 94782191 -54001281 + MIR SINE MIR 74 261 -1 247 283 0 0 chr11 94782741 94782801 -54000671 - L2 LINE L2 0 3313 3254 732 231 5 30 chr11 94782808 94783011 -54000461 - MER3 DNA MER1_type -11 198 1 260 228 41 98 chr11 94783011 94783134 -54000338 - L2 LINE L2 -52 3261 3146 404 293 57 37 chr11 94783227 94783374 -54000098 - MIR SINE MIR -41 167 20 276 331 55 31 chr11 94783470 94783597 -53999875 - L2 LINE L2 -5 3308 3179 180 0 0 0 chr11 94783627 94783647 -53999825 + (TTG)n Simple_repeat Simple_repeat 2 21 0 433 326 59 11 chr11 94783671 94783858 -53999614 + MIR SINE MIR 34 229 -33 234 193 0 0 chr11 94785016 94785073 -53998399 + (TG)n Simple_repeat Simple_repeat 2 58 0 227 270 40 27 chr11 94785399 94785473 -53997999 - L2 LINE L2 -2 3311 3237 348 306 102 25 chr11 94785693 94785850 -53997622 + MIR3 SINE MIR 16 184 -24 210 328 57 85 chr11 94786232 94786409 -53997063 + MER5A DNA MER1_type 17 188 -1 13261 189 31 26 chr11 94786416 94789019 -53994453 + L1PA16 LINE L1 1 2588 -4281 2258 118 0 0 chr11 94789019 94789316 -53994156 + AluSg SINE Alu 1 297 -13 13261 189 31 26 chr11 94789316 94791797 -53991675 + L1PA16 LINE L1 2588 5113 -1756 342 0 0 0 chr11 94791797 94791835 -53991637 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 13261 189 31 26 chr11 94791835 94793603 -53989869 + L1PA16 LINE L1 5113 6869 0 208 352 38 29 chr11 94795503 94795608 -53987864 + L2 LINE L2 2958 3063 -209 23 0 0 0 chr11 94796735 94796758 -53986714 + AT_rich Low_complexity Low_complexity 1 23 0 2120 204 70 46 chr11 94796827 94797387 -53986085 + MER119 DNA MER1_type 8 580 -3 30 27 0 0 chr11 94797696 94797733 -53985739 + AT_rich Low_complexity Low_complexity 1 37 0 370 313 12 100 chr11 94797808 94798067 -53985405 + MIR SINE MIR 1 236 -26 227 323 38 75 chr11 94798551 94798857 -53984615 - L2 LINE L2 -182 3090 2798 360 329 27 27 chr11 94799024 94799173 -53984299 + MIR3 SINE MIR 38 186 -22 272 302 12 12 chr11 94799551 94799637 -53983835 - L2 LINE L2 -5 3308 3223 186 302 87 56 chr11 94799729 94799855 -53983617 - L2 LINE L2 -226 3046 2917 217 333 28 0 chr11 94800754 94800826 -53982646 + MIR SINE MIR 116 189 -73 263 211 26 35 chr11 94801897 94802011 -53981461 + L1ME4a LINE L1 6007 6119 -2 320 259 60 65 chr11 94802066 94802267 -53981205 - L2 LINE L2 -993 2321 2122 195 312 94 71 chr11 94803519 94803689 -53979783 + MIR SINE MIR 33 206 -56 909 208 68 0 chr11 94803723 94803915 -53979557 - MIR SINE MIR 0 262 58 250 283 0 0 chr11 94804012 94804072 -53979400 - MIR SINE MIR -112 150 91 270 212 47 24 chr11 94804710 94804795 -53978677 + MIR SINE MIR 29 115 -147 389 338 50 29 chr11 94805956 94806095 -53977377 - MIR SINE MIR -112 150 9 278 243 121 57 chr11 94806688 94806828 -53976644 - MIR3 SINE MIR 0 208 60 215 213 0 0 chr11 94807114 94807161 -53976311 + GA-rich Low_complexity Low_complexity 2 48 0 231 103 0 0 chr11 94807211 94807250 -53976222 + (A)n Simple_repeat Simple_repeat 1 39 0 21 36 0 0 chr11 94808087 94808115 -53975357 + GC_rich Low_complexity Low_complexity 1 28 0 193 281 24 61 chr11 94808460 94808542 -53974930 + MIR SINE MIR 35 113 -149 605 289 101 5 chr11 94808768 94808976 -53974496 - MIR SINE MIR 0 262 35 222 266 50 65 chr11 94809032 94809171 -53974301 + L2 LINE L2 3133 3269 -44 327 294 124 28 chr11 94809185 94809403 -53974069 - L2 LINE L2 -109 3204 2966 439 252 111 30 chr11 94809468 94809603 -53973869 - MIR SINE MIR -71 191 46 290 253 63 21 chr11 94809721 94809799 -53973673 + MIR SINE MIR 79 164 -98 1945 138 3 0 chr11 94809799 94810115 -53973357 + AluSq SINE Alu 1 317 0 290 253 63 21 chr11 94810115 94810130 -53973342 + MIR SINE MIR 164 177 -85 480 207 136 21 chr11 94810800 94810940 -53972532 - MER69A DNA AcHobo -3 174 19 245 297 22 22 chr11 94811179 94811270 -53972202 + MIR3 SINE MIR 111 201 -7 558 162 30 0 chr11 94812450 94812549 -53970923 + MER94 DNA DNA 6 107 -27 480 321 116 0 chr11 94813244 94813434 -53970038 - MIR SINE MIR -48 214 3 556 300 63 34 chr11 94814179 94814416 -53969056 + MIR SINE MIR 1 244 -18 679 306 35 39 chr11 94814421 94814732 -53968740 + L2 LINE L2 2199 2508 -806 741 271 81 72 chr11 94815000 94815732 -53967740 + L1ME4a LINE L1 5328 6061 -60 767 176 8 0 chr11 94816420 94816551 -53966921 + FLAM_A SINE Alu 1 132 -1 261 287 59 0 chr11 94816590 94816691 -53966781 + MLT1J LTR MaLR 403 509 -2 200 35 35 0 chr11 94817060 94817089 -53966383 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 698 261 83 7 chr11 94817357 94817633 -53965839 + L1ME4a LINE L1 5612 5908 -213 323 266 65 61 chr11 94817872 94817991 -53965481 - HAL1 LINE L1 -1153 1354 1237 2433 30 40 7 chr11 94817991 94818292 -53965180 - AluY SINE Alu 0 311 1 323 266 65 61 chr11 94818292 94818435 -53965037 - HAL1 LINE L1 -1270 1237 1091 1993 152 76 15 chr11 94818610 94818953 -53964519 + THE1B LTR MaLR 1 364 0 4245 79 1 111 chr11 94818954 94819677 -53963795 + THE1B-int LTR MaLR 2 645 -935 933 152 76 0 chr11 94819677 94819835 -53963637 + THE1B LTR MaLR 195 364 0 1449 214 10 10 chr11 94820654 94820944 -53962528 - AluJo SINE Alu -18 294 5 297 301 37 2 chr11 94821957 94822093 -53961379 + MIR SINE MIR 49 142 -66 297 300 37 2 chr11 94822252 94822392 -53961080 + MIR SINE MIR 49 142 -66 302 230 82 15 chr11 94822691 94822772 -53960700 + MIR SINE MIR 40 124 -84 198 356 96 0 chr11 94822823 94822927 -53960545 - MIR SINE MIR -94 168 55 1230 136 44 4 chr11 94822948 94823176 -53960296 - L1MA8 LINE L1 -5 6286 6050 810 239 120 0 chr11 94823305 94823514 -53959958 + MIR SINE MIR 29 262 0 2370 68 7 3 chr11 94824499 94824792 -53958680 + AluY SINE Alu 1 294 -17 1208 160 41 132 chr11 94824807 94825126 -53958346 - AluJo SINE Alu -22 290 1 573 74 0 12 chr11 94825146 94825227 -53958245 - MADE1 DNA Mariner 0 80 1 378 0 0 0 chr11 94825291 94825333 -53958139 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 15219 212 31 11 chr11 94825334 94830864 -53952608 - L1PA15 LINE L1 -8 6808 1148 201 192 29 29 chr11 94831482 94831586 -53951886 + GA-rich Low_complexity Low_complexity 2 105 0 382 317 149 23 chr11 94831587 94831808 -53951664 - MIR SINE MIR -10 252 4 227 265 0 0 chr11 94831901 94831950 -53951522 + L2 LINE L2 3265 3313 0 347 318 32 26 chr11 94832803 94832957 -53950515 + MLT1J2 LTR MaLR 17 171 -279 2053 240 33 12 chr11 94833719 94834390 -53949082 - L1 LINE L1 -3423 2959 2281 25 0 0 0 chr11 94834525 94834550 -53948922 + AT_rich Low_complexity Low_complexity 1 25 0 333 111 0 0 chr11 94834555 94834609 -53948863 - L1MA10 LINE L1 -13 6321 6268 836 283 20 40 chr11 94835129 94835433 -53948039 + MLT1J2 LTR MaLR 1 298 -152 1142 310 22 31 chr11 94835434 94835879 -53947593 + L1MEc LINE L1 37 477 -5919 282 262 0 10 chr11 94835904 94836007 -53947465 + L1MA10 LINE L1 6233 6334 0 520 379 0 17 chr11 94836355 94836532 -53946940 + MER91A DNA MER1_type 1 174 -22 25 51 0 0 chr11 94837750 94837789 -53945683 + AT_rich Low_complexity Low_complexity 1 39 0 36 40 0 0 chr11 94838499 94838549 -53944923 + AT_rich Low_complexity Low_complexity 1 50 0 190 405 50 0 chr11 94838591 94838712 -53944760 - L2 LINE L2 -248 3065 2939 696 326 96 17 chr11 94839539 94839883 -53943589 + L2 LINE L2 32 402 -2912 1700 161 38 16 chr11 94840675 94841048 -53942424 - L1MA5 LINE L1 0 6300 5920 537 217 64 13 chr11 94841880 94842037 -53941435 + MLT1J2 LTR MaLR 3 167 -283 26 0 0 0 chr11 94842213 94842239 -53941233 + AT_rich Low_complexity Low_complexity 1 26 0 434 257 57 124 chr11 94842933 94843198 -53940274 - MIR SINE MIR -13 249 3 206 353 139 8 chr11 94843237 94843359 -53940113 + MIR SINE MIR 17 154 -108 1050 194 126 0 chr11 94843922 94844144 -53939328 - MSTA LTR MaLR -178 250 1 9107 174 19 16 chr11 94844144 94845790 -53937682 - MSTA-int LTR MaLR 0 1651 1 2185 146 100 8 chr11 94845792 94846182 -53937290 - MSTA LTR MaLR -2 426 1 21 36 0 0 chr11 94846304 94846332 -53937140 + AT_rich Low_complexity Low_complexity 1 28 0 340 151 0 0 chr11 94846505 94846578 -53936894 + L1PB1 LINE L1 6075 6147 -4 270 254 59 76 chr11 94846675 94846793 -53936679 - L2 LINE L2 -9 3304 3189 22 0 0 0 chr11 94847424 94847446 -53936026 + AT_rich Low_complexity Low_complexity 1 22 0 231 88 0 0 chr11 94847913 94847947 -53935525 + (GA)n Simple_repeat Simple_repeat 1 34 0 1409 204 89 49 chr11 94847975 94848029 -53935443 + MSTB LTR MaLR 1 51 -375 1494 199 29 29 chr11 94848029 94848341 -53935131 + AluJb SINE Alu 1 312 0 1409 204 89 49 chr11 94848341 94848692 -53934780 + MSTB LTR MaLR 51 422 -4 1404 296 99 14 chr11 94849718 94850488 -53932984 - L1M4 LINE L1 -1857 4289 3455 495 287 7 0 chr11 94850578 94850714 -53932758 - AluJb SINE Alu -175 137 1 42181 56 2 4 chr11 94850791 94856961 -53926511 - L1PA4 LINE L1 0 6155 3 1360 178 4 14 chr11 94856967 94857242 -53926230 - LTR24B LTR ERV1 -38 538 267 12797 226 29 28 chr11 94857242 94857608 -53925864 - L1PB4 LINE L1 -21 6837 6473 186 43 0 0 chr11 94857608 94857631 -53925841 + (CATATA)n Simple_repeat Simple_repeat 4 26 0 12797 226 29 28 chr11 94857631 94862991 -53920481 - L1PB4 LINE L1 -385 6473 1070 277 377 26 0 chr11 94863143 94863257 -53920215 - L1PB4 LINE L1 -6062 787 671 383 367 75 27 chr11 94863657 94863845 -53919627 - L1PB4 LINE L1 -6069 780 584 1103 311 31 52 chr11 94863868 94864315 -53919157 - L1PB4 LINE L1 -6399 450 13 477 293 69 16 chr11 94864452 94864640 -53918832 - MIR SINE MIR -62 200 3 355 336 20 7 chr11 94864729 94864875 -53918597 - MIR3 SINE MIR -12 196 49 316 337 99 17 chr11 94865858 94866039 -53917433 - MIR SINE MIR -58 204 9 396 0 0 0 chr11 94866473 94866517 -53916955 + (CA)n Simple_repeat Simple_repeat 1 44 0 246 325 98 98 chr11 94866656 94867062 -53916410 + L2 LINE L2 2845 3250 -22 231 88 0 0 chr11 94867108 94867142 -53916330 + (TGGA)n Simple_repeat Simple_repeat 4 37 0 279 290 28 37 chr11 94867389 94867496 -53915976 + MIR SINE MIR 47 152 -110 354 379 46 18 chr11 94867727 94867946 -53915526 + MIR SINE MIR 8 232 -30 356 172 0 0 chr11 94869034 94869092 -53914380 - L2 LINE L2 0 3272 3215 1926 160 105 25 chr11 94870227 94870628 -53912844 + Tigger2a DNA MER2_type 1 433 -1 256 255 144 20 chr11 94870633 94870786 -53912686 + MIR SINE MIR 20 191 -71 1142 276 64 27 chr11 94871692 94872065 -53911407 - LTR16C LTR ERVL -2 489 103 405 0 0 0 chr11 94872631 94872676 -53910796 + (TG)n Simple_repeat Simple_repeat 2 46 0 41101 66 5 0 chr11 94873092 94879218 -53904254 + L1PA5 LINE L1 1 6154 0 380 300 91 27 chr11 94879820 94879930 -53903542 - MER5A DNA MER1_type -28 161 45 360 306 47 47 chr11 94879985 94880217 -53903255 - MIR SINE MIR -26 236 5 601 246 24 0 chr11 94880557 94880683 -53902789 - MLT1I LTR MaLR -271 138 10 323 311 145 5 chr11 94880709 94880902 -53902570 + MIR SINE MIR 29 248 -14 374 302 158 22 chr11 94881130 94881408 -53902064 - LTR16A LTR ERVL -79 371 56 2121 93 46 0 chr11 94882011 94882291 -53901181 - AluSx SINE Alu -19 293 1 279 330 51 12 chr11 94882930 94883057 -53900415 + MIR SINE MIR 17 143 -65 191 146 24 0 chr11 94883927 94883968 -53899504 + (TA)n Simple_repeat Simple_repeat 2 43 0 304 185 0 0 chr11 94883979 94884033 -53899439 + L1MC4 LINE L1 6653 6706 -1336 330 134 24 37 chr11 94885112 94885194 -53898278 + CT-rich Low_complexity Low_complexity 4 84 0 344 293 61 28 chr11 94885257 94885438 -53898034 - HAL1b LINE L1 -71 1277 1091 2891 238 29 32 chr11 94885466 94886303 -53897169 + L1MC3 LINE L1 6629 7462 -323 * 5782 224 16 88 chr11 94886296 94887219 -53896253 + L1PA8A LINE L1 2150 2962 -3184 601 153 9 18 chr11 94887219 94887330 -53896142 + AluSg/x SINE Alu 195 304 -6 5782 224 16 88 chr11 94887330 94888376 -53895096 + L1PA8A LINE L1 2962 4081 -2065 2570 186 34 17 chr11 94888370 94889369 -53894103 + L1PA8A LINE L1 4701 5719 -412 * 1204 184 215 19 chr11 94889375 94889696 -53893776 - MSTA LTR MaLR -4 424 41 239 97 28 28 chr11 94889696 94889768 -53893704 + (TA)n Simple_repeat Simple_repeat 1 72 0 29 0 0 0 chr11 94889769 94889798 -53893674 + AT_rich Low_complexity Low_complexity 1 29 0 18101 178 26 9 chr11 94889799 94896463 -53887009 - L1PA14 LINE L1 -14 7585 770 2104 92 0 3 chr11 94896463 94896745 -53886727 + AluY SINE Alu 16 296 -15 18101 178 26 9 chr11 94896745 94897519 -53885953 - L1PA14 LINE L1 -6829 770 10 332 134 0 12 chr11 94897519 94897582 -53885890 - MSTA LTR MaLR -374 54 1 1342 265 80 8 chr11 94897686 94898346 -53885126 + L1ME1 LINE L1 4006 4713 -1433 17063 162 42 43 chr11 94898359 94900377 -53883095 + L1MA3 LINE L1 17 2035 -5689 1192 131 0 0 chr11 94900377 94900545 -53882927 + AluSg/x SINE Alu 137 304 -8 17063 162 42 43 chr11 94900545 94906051 -53877421 + L1MA3 LINE L1 2035 7717 -7 2400 223 43 53 chr11 94906066 94907182 -53876290 + L1ME1 LINE L1 4695 5947 -387 2222 88 58 0 chr11 94907182 94907476 -53875996 + AluY SINE Alu 1 311 0 2400 223 43 53 chr11 94907476 94907819 -53875653 + L1ME1 LINE L1 5947 6292 -42 216 97 0 0 chr11 94908056 94908087 -53875385 + (CA)n Simple_repeat Simple_repeat 2 32 0 200 238 16 16 chr11 94908088 94908151 -53875321 + A-rich Low_complexity Low_complexity 5 67 0 282 125 0 0 chr11 94909113 94909161 -53874311 + (TTCCC)n Simple_repeat Simple_repeat 5 52 0 232 333 50 0 chr11 94909325 94909424 -53874048 + MIR SINE MIR 133 236 -26 673 266 147 5 chr11 94909489 94909707 -53873765 - MIR SINE MIR -10 252 4 302 188 25 0 chr11 94910450 94910530 -53872942 + (CATATA)n Simple_repeat Simple_repeat 6 87 0 383 127 0 0 chr11 94910756 94910819 -53872653 + L1PB4 LINE L1 5604 5666 -490 1659 187 24 0 chr11 94910821 94911115 -53872357 + AluJo SINE Alu 1 301 -11 723 177 13 44 chr11 94911115 94911273 -53872199 + L1PB4 LINE L1 5999 6151 -5 3559 91 33 2 chr11 94911273 94911790 -53871682 + L1PA13 LINE L1 5628 6162 -1 22 56 0 0 chr11 94911793 94911829 -53871643 + AT_rich Low_complexity Low_complexity 1 36 0 251 325 32 16 chr11 94912195 94912321 -53871151 + L2 LINE L2 2618 2745 -569 295 264 169 27 chr11 94913385 94913533 -53869939 + MIR SINE MIR 32 200 -62 291 289 0 24 chr11 94914340 94914423 -53869049 + MER91A DNA MER1_type 115 195 -1 392 311 184 24 chr11 94914838 94915208 -53868264 - L2 LINE L2 -552 2762 2334 527 247 164 52 chr11 94915268 94915555 -53867917 + MLT1E LTR MaLR 7 325 -268 * 827 212 78 30 chr11 94915551 94915972 -53867500 - LTR56 LTR ERV1 -5 571 29 1495 159 103 15 chr11 94916295 94916634 -53866838 + THE1C LTR MaLR 1 369 -6 237 239 77 34 chr11 94916915 94917032 -53866440 - L1ME LINE L1 -302 5819 5698 23 0 0 0 chr11 94917384 94917407 -53866065 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr11 94917500 94917520 -53865952 + (A)n Simple_repeat Simple_repeat 1 20 0 959 165 82 34 chr11 94919390 94919596 -53863876 - MER20 DNA MER1_type 0 219 4 238 314 42 68 chr11 94919805 94919996 -53863476 - MIR SINE MIR -71 191 6 5389 151 28 30 chr11 94920004 94921470 -53862002 - L1MA4A LINE L1 -11 6292 4814 231 262 262 0 chr11 94922830 94922933 -53860539 + MIR3 SINE MIR 77 206 -2 28 29 0 0 chr11 94923145 94923180 -53860292 + AT_rich Low_complexity Low_complexity 1 35 0 255 256 128 0 chr11 94923393 94923442 -53860030 - MIR SINE MIR -10 252 211 378 0 0 0 chr11 94923442 94923484 -53859988 + (TA)n Simple_repeat Simple_repeat 2 43 0 255 256 128 0 chr11 94923484 94923520 -53859952 - MIR SINE MIR -51 211 156 572 174 0 0 chr11 94923736 94923834 -53859638 + AluJb SINE Alu 133 230 -82 715 7 130 0 chr11 94923921 94924075 -53859397 + GA-rich Low_complexity Low_complexity 3 176 0 311 192 30 10 chr11 94924102 94924201 -53859271 + GA-rich Low_complexity Low_complexity 3 103 0 319 264 9 57 chr11 94924201 94924307 -53859165 - MIR SINE MIR -133 129 29 447 311 99 0 chr11 94925530 94925681 -53857791 + MIR3 SINE MIR 18 183 -25 22 35 0 0 chr11 94926194 94926223 -53857249 + AT_rich Low_complexity Low_complexity 1 29 0 452 230 255 0 chr11 94927327 94927488 -53855984 + MIR SINE MIR 5 206 -56 187 342 50 93 chr11 94927574 94927735 -53855737 + L2 LINE L2 3029 3182 -90 1808 179 0 7 chr11 94927981 94928278 -53855194 - AluJb SINE Alu -17 295 1 221 285 125 28 chr11 94928386 94928530 -53854942 + MIR SINE MIR 79 236 -26 201 323 42 52 chr11 94928550 94928646 -53854826 - MIR SINE MIR -98 110 16 472 205 45 3 chr11 94929272 94929432 -53854040 + MLT1A2 LTR MaLR 1 212 -162 377 257 35 56 chr11 94929576 94929720 -53853752 - MIR3 SINE MIR -28 180 40 236 289 26 79 chr11 94929953 94930067 -53853405 + MIR SINE MIR 16 123 -85 201 255 65 147 chr11 94930550 94930734 -53852738 + MIR3 SINE MIR 16 184 -24 266 328 102 6 chr11 94932835 94933012 -53850460 + MER117 DNA MER1_type 4 197 0 516 133 37 37 chr11 94933710 94933856 -53849616 + MER51A LTR ERV1 1 146 -231 1933 129 3 9 chr11 94933866 94934183 -53849289 + MER51B LTR ERV1 63 377 0 432 118 0 0 chr11 94934366 94934434 -53849038 + (CA)n Simple_repeat Simple_repeat 1 68 0 2546 51 6 10 chr11 94934941 94935252 -53848220 + AluY SINE Alu 1 310 -1 3679 191 42 43 chr11 94935746 94936512 -53846960 - MER21A LTR ERV1 -39 892 126 189 0 0 0 chr11 94936512 94936533 -53846939 + (GA)n Simple_repeat Simple_repeat 2 22 0 3679 191 42 43 chr11 94936533 94936633 -53846839 - MER21A LTR ERV1 -805 126 27 557 303 31 10 chr11 94936739 94936934 -53846538 + MIR SINE MIR 63 261 -1 4254 65 0 26 chr11 94937122 94937413 -53846059 + MER41A LTR ERV1 1 271 -283 2051 149 7 0 chr11 94937413 94937708 -53845764 + AluSx SINE Alu 1 297 -15 4254 65 0 26 chr11 94937708 94937985 -53845487 + MER41A LTR ERV1 271 554 0 3297 176 76 30 chr11 94938882 94939672 -53843800 + LTR1B LTR ERV1 1 826 0 25 31 0 0 chr11 94939999 94940031 -53843441 + AT_rich Low_complexity Low_complexity 1 32 0 216 0 0 0 chr11 94940154 94940178 -53843294 + (T)n Simple_repeat Simple_repeat 1 24 0 985 126 7 13 chr11 94940435 94940586 -53842886 - LTR8 LTR ERV1 -1 690 541 3333 189 35 18 chr11 94940674 94941049 -53842423 + LTR8A LTR ERV1 1 395 -332 496 51 0 39 chr11 94941049 94941127 -53842345 + (TTTTA)n Simple_repeat Simple_repeat 2 76 0 3333 189 35 18 chr11 94941127 94941465 -53842007 + LTR8A LTR ERV1 395 726 -1 348 171 73 12 chr11 94941976 94942058 -53841414 + L1ME4a LINE L1 5513 5599 -522 315 269 70 64 chr11 94942216 94942372 -53841100 + L1ME4a LINE L1 5803 5959 -162 315 0 0 0 chr11 94942412 94942447 -53841025 + (CA)n Simple_repeat Simple_repeat 1 35 0 402 329 84 12 chr11 94942675 94942842 -53840630 + MER5A DNA MER1_type 9 187 -2 279 333 0 11 chr11 94943643 94943736 -53839736 - MIR3 SINE MIR -5 203 112 1989 157 49 11 chr11 94944194 94944564 -53838908 + MLT1B LTR MaLR 3 386 -4 218 54 0 27 chr11 94945391 94945428 -53838044 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 195 296 68 31 chr11 94945436 94945598 -53837874 - MIR SINE MIR -39 223 56 2025 114 11 4 chr11 94945673 94945954 -53837518 - AluSx SINE Alu -18 294 12 220 273 0 0 chr11 94946121 94946165 -53837307 - MIR SINE MIR -190 72 29 227 333 149 9 chr11 94946327 94946441 -53837031 + MIR3 SINE MIR 77 206 -2 769 259 9 43 chr11 94946447 94946679 -53836793 - MER58A DNA MER1_type 0 224 1 719 185 105 0 chr11 94946712 94946874 -53836598 - MER58A DNA MER1_type 0 224 46 2178 119 0 0 chr11 94947131 94947425 -53836047 - AluSx SINE Alu -18 294 1 544 194 11 0 chr11 94948096 94948189 -53835283 + MER58A DNA MER1_type 43 136 0 480 238 90 16 chr11 94948802 94948924 -53834548 + MIR SINE MIR 20 150 -112 605 257 0 14 chr11 94948925 94949073 -53834399 + FRAM SINE Alu 1 146 -30 267 31 0 0 chr11 94949073 94949105 -53834367 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 190 313 153 47 chr11 94949152 94949302 -53834170 + L2 LINE L2 3148 3313 0 2411 84 0 0 chr11 94949567 94949864 -53833608 - AluSx SINE Alu -15 297 1 360 272 55 46 chr11 94950802 94950984 -53832488 + MIR SINE MIR 10 191 -69 243 265 76 45 chr11 94951170 94951221 -53832251 + Charlie7 DNA MER1_type 65 113 -2499 1901 143 0 7 chr11 94951221 94951541 -53831931 + AluSp SINE Alu 1 318 0 243 265 76 45 chr11 94951541 94951620 -53831852 + Charlie7 DNA MER1_type 113 200 -2412 426 233 130 0 chr11 94951676 94951822 -53831650 + Charlie7 DNA MER1_type 314 478 -2134 716 261 63 19 chr11 94951909 94952227 -53831245 - Charlie7 DNA MER1_type -472 2140 1809 227 307 33 108 chr11 94952989 94953201 -53830271 - L3 LINE CR1 -1 1576 1381 24 53 0 0 chr11 94953254 94953292 -53830180 + AT_rich Low_complexity Low_complexity 1 38 0 289 365 55 0 chr11 94953421 94953566 -53829906 - L2 LINE L2 0 3313 3161 5911 85 28 4 chr11 94953741 94953854 -53829618 - L1PA10 LINE L1 -4 6164 6055 873 63 103 0 chr11 94953854 94953980 -53829492 + MER85 DNA T2_type 1 139 0 5911 85 28 4 chr11 94953980 94955140 -53828332 - L1PA10 LINE L1 -113 6055 4855 11489 126 11 1 chr11 94955141 94956925 -53826547 + L1P LINE L1 3264 5064 -1082 268 278 72 10 chr11 94959589 94959686 -53823786 - MER103 DNA DNA -18 148 46 1760 140 15 0 chr11 94961217 94961489 -53821983 - AluSx SINE Alu -4 308 33 1867 109 92 0 chr11 94961797 94962081 -53821391 + AluSx SINE Alu 1 310 -2 1412 166 115 0 chr11 94962328 94962581 -53820891 - AluSg SINE Alu -16 294 13 25 0 0 0 chr11 94962955 94962980 -53820492 + AT_rich Low_complexity Low_complexity 1 25 0 2030 103 4 0 chr11 94962984 94963245 -53820227 - AluSx SINE Alu -50 262 1 3555 184 87 78 chr11 94963645 94964557 -53818915 - MER21A LTR ERV1 -6 925 6 1503 143 70 44 chr11 94967911 94968184 -53815288 + AluJo SINE Alu 9 288 -24 180 0 0 0 chr11 94968836 94968856 -53814616 + (A)n Simple_repeat Simple_repeat 1 20 0 2260 84 3 3 chr11 94968856 94969155 -53814317 + AluY SINE Alu 1 299 -12 242 270 16 0 chr11 94969428 94969491 -53813981 - L2 LINE L2 -5 3308 3245 25 0 0 0 chr11 94969526 94969551 -53813921 + AT_rich Low_complexity Low_complexity 1 25 0 33 25 0 0 chr11 94969724 94969764 -53813708 + AT_rich Low_complexity Low_complexity 1 40 0 28 0 0 0 chr11 94970527 94970555 -53812917 + AT_rich Low_complexity Low_complexity 1 28 0 315 253 0 12 chr11 94971054 94971137 -53812335 - MIR3 SINE MIR -38 170 89 243 113 264 0 chr11 94971335 94971388 -53812084 - L2 LINE L2 -23 3249 3183 364 394 25 0 chr11 94972011 94972171 -53811301 - MIR3 SINE MIR -29 179 16 840 212 80 117 chr11 94972272 94972478 -53810994 - MER20B DNA MER1_type -62 721 509 3345 144 28 73 chr11 94972478 94973202 -53810270 - LTR8 LTR ERV1 0 691 1 840 212 80 117 chr11 94973202 94973509 -53809963 - MER20B DNA MER1_type -274 509 227 264 136 23 0 chr11 94973531 94973575 -53809897 + MER5A DNA MER1_type 1 45 -144 1487 181 134 28 chr11 94973575 94973962 -53809510 - MSTC LTR MaLR 0 428 1 4109 246 105 25 chr11 94973962 94975484 -53807988 - MSTC-int LTR MaLR 0 1651 2 1741 179 39 60 chr11 94975486 94975923 -53807549 - MSTC LTR MaLR 0 428 1 606 267 34 14 chr11 94975923 94976069 -53807403 + MER5A DNA MER1_type 41 189 0 633 241 16 58 chr11 94976078 94976269 -53807203 + MIR SINE MIR 18 200 -62 234 324 44 0 chr11 94976369 94976437 -53807035 + L2 LINE L2 3242 3312 -1 235 253 22 66 chr11 94976696 94976787 -53806685 - MIR SINE MIR -59 203 117 363 333 48 42 chr11 94976788 94977097 -53806375 - LTR16B LTR ERVL -52 412 102 268 388 46 27 chr11 94977292 94977511 -53805961 + L2 LINE L2 3049 3271 -1 1152 221 93 16 chr11 94977670 94978055 -53805417 - Charlie1 DNA MER1_type 0 2761 2347 390 307 51 2 chr11 94978469 94978618 -53804854 - MIR SINE MIR -18 190 28 287 341 11 0 chr11 94978926 94979017 -53804455 + L2 LINE L2 2542 2633 -681 233 284 42 32 chr11 94979041 94979136 -53804336 + L2 LINE L2 2435 2530 -784 230 298 105 61 chr11 94979144 94979483 -53803989 + L2 LINE L2 2696 3066 -247 3358 146 20 13 chr11 94979516 94980060 -53803412 - MER72 LTR ERV1 0 722 175 572 122 0 0 chr11 94980060 94980142 -53803330 + MER30B DNA MER1_type 1 82 -108 405 76 0 7 chr11 94980142 94980379 -53803093 + AluYa5 SINE Alu 1 302 -9 645 105 0 0 chr11 94980405 94980500 -53802972 + (GAAA)n Simple_repeat Simple_repeat 4 98 0 827 97 0 26 chr11 94980504 94980617 -53802855 + MER30B DNA MER1_type 121 230 0 1107 188 11 0 chr11 94980618 94980799 -53802673 - MER72 LTR ERV1 -539 183 1 415 216 189 9 chr11 94980861 94980972 -53802500 + L2 LINE L2 3176 3306 -7 2038 131 20 0 chr11 94981097 94981394 -53802078 - AluSx SINE Alu -9 303 1 685 253 51 0 chr11 94981984 94982142 -53801330 - FRAM SINE Alu 0 166 1 23 0 0 0 chr11 94982330 94982353 -53801119 + AT_rich Low_complexity Low_complexity 1 23 0 989 221 58 4 chr11 94982583 94982823 -53800649 + MIR SINE MIR 10 262 0 263 230 15 170 chr11 94983049 94983249 -53800223 - L1ME LINE L1 -336 5785 5617 25 90 0 0 chr11 94983359 94983426 -53800046 + AT_rich Low_complexity Low_complexity 1 67 0 23 0 0 0 chr11 94983515 94983538 -53799934 + AT_rich Low_complexity Low_complexity 1 23 0 2247 77 0 14 chr11 94983540 94983865 -53799607 + AluY SINE Alu 1 321 0 245 288 118 10 chr11 94984103 94984416 -53799056 - L1M4 LINE L1 -2926 3220 2874 24 32 0 0 chr11 94984439 94984470 -53799002 + AT_rich Low_complexity Low_complexity 1 31 0 2219 113 10 0 chr11 94985186 94985486 -53797986 - AluSg SINE Alu -7 303 1 318 369 102 11 chr11 94985496 94985683 -53797789 - MIR SINE MIR 0 262 59 28 48 0 0 chr11 94985803 94985845 -53797627 + AT_rich Low_complexity Low_complexity 1 42 0 228 275 29 0 chr11 94986053 94986122 -53797350 - L2 LINE L2 0 3313 3243 242 368 64 6 chr11 94987258 94987419 -53796053 + MIR SINE MIR 20 188 -74 374 297 51 8 chr11 94987442 94987560 -53795912 - L2 LINE L2 0 3313 3191 252 358 14 10 chr11 94987844 94988051 -53795421 + L1ME LINE L1 5529 5736 -385 29 28 0 0 chr11 94988132 94988168 -53795304 + AT_rich Low_complexity Low_complexity 1 36 0 249 313 25 0 chr11 94988195 94988275 -53795197 - LTR40c LTR ERVL -197 268 187 372 256 202 30 chr11 94988355 94988523 -53794949 - LTR40a LTR ERVL -320 199 3 28 61 0 0 chr11 94988528 94988577 -53794895 + AT_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chr11 94988959 94988983 -53794489 + AT_rich Low_complexity Low_complexity 1 24 0 284 276 69 103 chr11 94989265 94989342 -53794130 + MIR SINE MIR 69 140 -122 2492 64 0 3 chr11 94989342 94989654 -53793818 + AluY SINE Alu 1 311 0 284 276 69 103 chr11 94989654 94989721 -53793751 + MIR SINE MIR 140 208 -54 199 137 20 20 chr11 94989987 94990038 -53793434 + GA-rich Low_complexity Low_complexity 2 52 0 255 250 86 86 chr11 94991168 94991296 -53792176 + MIR3 SINE MIR 37 164 -44 951 92 0 15 chr11 94991494 94991625 -53791847 + AluY SINE Alu 1 129 -182 664 120 11 33 chr11 94991625 94991809 -53791663 + (TA)n Simple_repeat Simple_repeat 1 180 0 258 280 70 10 chr11 94991844 94991944 -53791528 - MIR SINE MIR -152 110 5 22 0 0 0 chr11 94993518 94993540 -53789932 + AT_rich Low_complexity Low_complexity 1 22 0 2557 43 0 0 chr11 94993615 94993919 -53789553 + AluY SINE Alu 1 304 -7 394 314 62 33 chr11 94993994 94994204 -53789268 + L1MC/D LINE L1 5416 5631 -2177 2222 94 7 0 chr11 94994227 94994515 -53788957 + AluSq SINE Alu 4 293 -20 2166 114 7 0 chr11 94994601 94994899 -53788573 + AluSp SINE Alu 1 300 -13 2278 119 0 0 chr11 94994978 94995290 -53788182 + AluSx SINE Alu 1 312 0 230 272 200 16 chr11 94996215 94996340 -53787132 - MIR SINE MIR -15 247 100 254 28 0 28 chr11 94997270 94997306 -53786166 + (CAT)n Simple_repeat Simple_repeat 2 36 0 325 293 26 0 chr11 94998364 94998480 -53784992 + L1ME4a LINE L1 5279 5397 -749 833 148 0 0 chr11 94998551 94998673 -53784799 + FLAM_A SINE Alu 21 142 0 552 283 73 100 chr11 94998693 94998751 -53784721 + L1ME4a LINE L1 5457 5515 -606 678 209 4 89 chr11 94998751 94998862 -53784610 + MER3 DNA MER1_type 2 86 -123 1488 192 7 31 chr11 94998862 94999148 -53784324 + AluJo SINE Alu 1 279 -33 678 209 4 89 chr11 94999148 94999261 -53784211 + MER3 DNA MER1_type 86 207 -2 552 283 73 100 chr11 94999261 94999731 -53783741 + L1ME4a LINE L1 5515 5924 -197 220 364 88 18 chr11 95000355 95000627 -53782845 + L2 LINE L2 2804 3094 -178 503 382 69 3 chr11 95001059 95001347 -53782125 - L2 LINE L2 -2 3311 3005 23 33 0 0 chr11 95001861 95001891 -53781581 + AT_rich Low_complexity Low_complexity 1 30 0 310 53 0 0 chr11 95002034 95002072 -53781400 + tRNA-Ile-ATT tRNA tRNA 1 38 -39 23 33 0 0 chr11 95002963 95002993 -53780479 + AT_rich Low_complexity Low_complexity 1 30 0 2134 129 10 3 chr11 95003000 95003310 -53780162 + AluSx SINE Alu 1 312 0 318 304 69 44 chr11 95004587 95004791 -53778681 - MIR SINE MIR -17 245 37 665 298 94 8 chr11 95004840 95005075 -53778397 + MIR SINE MIR 8 262 0 413 216 81 0 chr11 95005345 95005456 -53778016 + L1MC4 LINE L1 7121 7240 -802 3285 266 85 50 chr11 95005461 95006778 -53776694 + L1MCc LINE L1 20 1410 -5186 2099 94 0 4 chr11 95006778 95007084 -53776388 + AluY SINE Alu 27 311 0 3285 266 85 50 chr11 95007084 95007392 -53776080 + L1MCc LINE L1 1410 1706 -4890 237 229 16 0 chr11 95007391 95007452 -53776020 + L1M4 LINE L1 4301 4362 -1784 * 1862 301 87 27 chr11 95007676 95008537 -53774935 + L2 LINE L2 1797 2709 -605 498 197 23 0 chr11 95008552 95008684 -53774788 + (TA)n Simple_repeat Simple_repeat 1 135 0 243 310 169 21 chr11 95008684 95008826 -53774646 + L2 LINE L2 2782 2944 -370 445 266 57 28 chr11 95008927 95009104 -53774368 - LTR16A1 LTR ERVL -86 371 190 439 187 63 6 chr11 95009329 95009451 -53774021 - L1MDa LINE L1 -4878 1504 1281 181 406 0 0 chr11 95009525 95009594 -53773878 + L3b LINE CR1 1512 1580 -3 243 286 39 13 chr11 95011080 95011157 -53772315 - LTR67 LTR ERVL -380 177 99 1693 163 16 38 chr11 95011278 95011597 -53771875 + AluJb SINE Alu 1 312 0 271 309 25 0 chr11 95011720 95011801 -53771671 - MIR3 SINE MIR -33 175 93 780 166 96 21 chr11 95012411 95012598 -53770874 - MLT1B LTR MaLR 0 390 190 282 255 59 20 chr11 95012782 95012884 -53770588 + L1MCc LINE L1 2754 2859 -4263 5295 199 23 18 chr11 95012886 95014983 -53768489 + L1MA10 LINE L1 4222 6331 -3 604 294 60 16 chr11 95014981 95015366 -53768106 + L1MCc LINE L1 3868 4269 -2672 * 402 234 147 65 chr11 95015369 95015520 -53767952 - L1M4 LINE L1 -2175 3971 3834 1779 154 41 0 chr11 95015520 95015813 -53767659 - AluSx SINE Alu -7 305 1 402 234 147 65 chr11 95015813 95016015 -53767457 - L1M4 LINE L1 -2312 3834 3589 430 269 75 51 chr11 95016015 95016386 -53767086 + L1MEc LINE L1 1375 1754 -4642 244 271 0 0 chr11 95016399 95016458 -53767014 + (CA)n Simple_repeat Simple_repeat 2 60 0 1598 259 62 41 chr11 95016625 95017717 -53765755 - L1MCc LINE L1 -4891 1532 792 294 227 82 10 chr11 95017791 95017888 -53765584 - L1MCc LINE L1 -5951 472 369 2117 141 3 0 chr11 95017888 95018200 -53765272 + AluSp SINE Alu 1 313 0 355 96 0 0 chr11 95018224 95018276 -53765196 + MER66B LTR ERV1 295 346 -140 1152 270 18 3 chr11 95018305 95018635 -53764837 - L1MCc LINE L1 -6062 361 27 237 192 27 27 chr11 95018638 95018711 -53764761 - L1MC4 LINE L1 -469 7573 7501 1954 219 63 29 chr11 95018716 95019122 -53764350 - L1MC4 LINE L1 -619 7423 6986 1621 96 165 8 chr11 95019122 95019383 -53764089 - AluSq SINE Alu 0 303 2 1954 219 63 29 chr11 95019383 95019607 -53763865 - L1MC4 LINE L1 -1056 6986 6771 21 0 0 0 chr11 95019611 95019632 -53763840 + AT_rich Low_complexity Low_complexity 1 21 0 233 229 0 0 chr11 95019689 95019737 -53763735 + L2 LINE L2 3224 3271 -1 1487 121 0 26 chr11 95020376 95020608 -53762864 + AluSg1 SINE Alu 1 226 -83 2483 155 114 13 chr11 95020821 95021492 -53761980 + L1MCa LINE L1 1508 2339 -4087 189 254 0 0 chr11 95021542 95021597 -53761875 + GA-rich Low_complexity Low_complexity 2 56 0 2610 20 26 0 chr11 95021661 95021964 -53761508 - AluYa5 SINE Alu 0 311 1 1490 108 4 8 chr11 95022232 95022473 -53760999 + L1MA4A LINE L1 6064 6303 0 246 146 85 12 chr11 95022578 95022660 -53760812 + L1MB2 LINE L1 6084 6171 0 3161 171 3 10 chr11 95022772 95023387 -53760085 + L1MCa LINE L1 2390 3000 -3426 225 299 131 28 chr11 95023600 95023707 -53759765 - MIR SINE MIR -113 149 32 241 326 0 11 chr11 95023999 95024088 -53759384 + L2 LINE L2 3017 3104 -168 216 67 0 0 chr11 95024843 95024873 -53758599 + (CA)n Simple_repeat Simple_repeat 2 31 0 202 231 0 0 chr11 95025006 95025045 -53758427 - MER5B DNA MER1_type -123 55 17 260 255 20 41 chr11 95025126 95025224 -53758248 + T-rich Low_complexity Low_complexity 5 100 0 232 386 140 0 chr11 95025949 95026063 -53757409 + L2 LINE L2 3134 3263 -9 2259 124 30 25 chr11 95026173 95026535 -53756937 - THE1B LTR MaLR 0 364 1 11251 106 6 2 chr11 95026535 95028109 -53755363 - THE1B-int LTR MaLR 0 1580 1 2079 125 54 28 chr11 95028111 95028464 -53755008 - THE1B LTR MaLR -2 362 1 23 33 0 0 chr11 95028475 95028505 -53754967 + AT_rich Low_complexity Low_complexity 1 30 0 25461 33 4 2 chr11 95028606 95032505 -53750967 - L1PA3 LINE L1 -17 6138 2236 285 29 0 0 chr11 95032589 95032623 -53750849 + (TG)n Simple_repeat Simple_repeat 2 35 0 2184 159 41 12 chr11 95032859 95033273 -53750199 + MSTB LTR MaLR 1 426 0 2354 183 88 19 chr11 95033700 95034213 -53749259 - MER44D DNA MER2_type 0 605 3 439 187 63 6 chr11 95035047 95035169 -53748303 - L1MDa LINE L1 -4878 1504 1281 181 406 0 0 chr11 95035243 95035312 -53748160 + L3b LINE CR1 1512 1580 -3 346 328 73 10 chr11 95037366 95037558 -53745914 - MIR SINE MIR -12 250 47 468 150 0 0 chr11 95037615 95037695 -53745777 + (ATG)n Simple_repeat Simple_repeat 2 81 0 467 317 97 4 chr11 95037703 95037930 -53745542 - MIR SINE MIR -3 259 12 231 36 0 0 chr11 95039202 95039230 -53744242 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 213 379 0 0 chr11 95039414 95039501 -53743971 + MIR3 SINE MIR 108 194 -14 262 335 67 39 chr11 95039589 95039768 -53743704 - L2 LINE L2 -1 3271 3088 354 23 0 0 chr11 95043046 95043089 -53740383 + (TG)n Simple_repeat Simple_repeat 2 44 0 264 59 0 0 chr11 95043783 95043817 -53739655 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 433 320 94 17 chr11 95044184 95044534 -53738938 + MLT1I LTR MaLR 25 401 -8 240 86 0 0 chr11 95046064 95046099 -53737373 + (CAT)n Simple_repeat Simple_repeat 1 35 0 239 226 0 0 chr11 95046297 95046350 -53737122 + (TTTG)n Simple_repeat Simple_repeat 4 56 0 1507 188 12 81 chr11 95046469 95046548 -53736924 - MLT1B LTR MaLR 0 390 307 2240 130 0 0 chr11 95046548 95046856 -53736616 - AluSq SINE Alu -5 308 1 1507 188 12 81 chr11 95046856 95047186 -53736286 - MLT1B LTR MaLR -83 307 9 219 149 43 21 chr11 95047534 95047581 -53735891 + CT-rich Low_complexity Low_complexity 1 48 0 342 257 20 0 chr11 95047937 95048038 -53735434 - MARNA DNA Mariner -72 514 412 2367 98 0 0 chr11 95048358 95048665 -53734807 - AluSc SINE Alu -2 307 1 6128 68 11 0 chr11 95048796 95049626 -53733846 - L1PA8 LINE L1 0 6172 5334 211 310 186 18 chr11 95050502 95050615 -53732857 + L2 LINE L2 3141 3272 0 223 163 0 0 chr11 95050615 95050658 -53732814 + (TGAA)n Simple_repeat Simple_repeat 2 44 0 263 189 105 6 chr11 95052059 95052147 -53731325 - MER5B DNA MER1_type -5 173 22 366 279 146 6 chr11 95052284 95052442 -53731030 - MER5A DNA MER1_type -1 188 9 375 240 130 52 chr11 95052502 95052694 -53730778 + MIR SINE MIR 31 237 -25 470 259 18 71 chr11 95052924 95053006 -53730466 - L2 LINE L2 -1 3312 3242 1802 222 110 82 chr11 95053006 95053513 -53729959 + MER63C DNA MER1_type 1 545 -515 2392 65 0 0 chr11 95053513 95053807 -53729665 + AluY SINE Alu 1 294 -17 1802 222 110 82 chr11 95053807 95054201 -53729271 + MER63C DNA MER1_type 545 927 -3 470 259 18 71 chr11 95054201 95054288 -53729184 - L2 LINE L2 -71 3242 3152 1103 219 32 59 chr11 95054322 95054857 -53728615 + MLT1E3 LTR MaLR 1 622 -2 206 263 70 0 chr11 95055283 95055340 -53728132 - L2 LINE L2 -10 3262 3202 400 297 63 0 chr11 95055441 95055552 -53727920 + MIR SINE MIR 61 178 -84 769 193 0 14 chr11 95055552 95055692 -53727780 + FLAM_C SINE Alu 1 138 -5 192 77 0 0 chr11 95055955 95055981 -53727491 + (CA)n Simple_repeat Simple_repeat 2 27 0 369 250 163 12 chr11 95056128 95056288 -53727184 + L1ME4a LINE L1 5938 6121 0 183 80 0 0 chr11 95058780 95058805 -53724667 + (TTG)n Simple_repeat Simple_repeat 2 26 0 336 24 0 0 chr11 95058945 95058986 -53724486 + (TG)n Simple_repeat Simple_repeat 2 42 0 2056 120 10 10 chr11 95059406 95059732 -53723740 + AluSx SINE Alu 1 312 0 372 301 169 6 chr11 95059838 95060004 -53723468 - MIR SINE MIR -7 255 63 1800 211 1 3 chr11 95060173 95060535 -53722937 - MLT1A1 LTR MaLR -2 394 1 1236 244 26 29 chr11 95061010 95061355 -53722117 - MLT1A1 LTR MaLR 0 365 22 263 288 135 47 chr11 95061484 95061654 -53721818 - L2 LINE L2 -22 3291 3107 311 245 43 11 chr11 95062182 95062276 -53721196 - MLT1H1 LTR MaLR -18 537 441 25 51 0 0 chr11 95062817 95062856 -53720616 + AT_rich Low_complexity Low_complexity 1 39 0 1116 301 67 10 chr11 95063034 95063515 -53719957 + MER69 DNA AcHobo 8 515 -711 474 174 90 40 chr11 95063525 95063726 -53719746 + MER69 DNA AcHobo 2309 2519 -7 1224 204 9 102 chr11 95063940 95064283 -53719189 + AluJo SINE Alu 1 311 -1 192 77 0 0 chr11 95064290 95064316 -53719156 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 292 203 0 0 chr11 95065642 95065701 -53717771 + MLT1K LTR MaLR 512 570 -18 662 234 53 18 chr11 95065770 95065941 -53717531 + MER5A DNA MER1_type 6 182 -7 199 284 149 0 chr11 95065952 95066026 -53717446 - MER5A DNA MER1_type -104 85 1 2035 113 34 0 chr11 95066229 95066522 -53716950 + AluSx SINE Alu 2 304 -8 877 212 28 18 chr11 95067113 95067330 -53716142 - MER20 DNA MER1_type 0 219 1 220 306 48 81 chr11 95067891 95068015 -53715457 + MER5A DNA MER1_type 64 183 -6 3392 127 49 52 chr11 95068329 95068945 -53714527 - LTR18B LTR ERVL 0 614 1 3620 164 55 74 chr11 95069125 95069910 -53713562 - HERVL18 LTR ERVL -2557 3490 2721 620 182 15 13 chr11 95069911 95070136 -53713336 - HERVL18 LTR ERVL -3596 2451 2119 * 967 198 17 16 chr11 95070135 95070494 -53712978 - HERVL18 LTR ERVL -4237 1810 1388 762 229 16 22 chr11 95070512 95070695 -53712777 - HERVL18 LTR ERVL -5374 673 492 * 1120 238 35 21 chr11 95070677 95070959 -53712513 - HERVL18 LTR ERVL -5743 304 19 3064 159 78 14 chr11 95070981 95071558 -53711914 - LTR18B LTR ERVL 0 614 1 2516 164 27 9 chr11 95071728 95072178 -53711294 - LTR32 LTR ERVL 0 471 14 198 0 0 0 chr11 95072528 95072550 -53710922 + (A)n Simple_repeat Simple_repeat 1 22 0 23 33 0 0 chr11 95073267 95073297 -53710175 + AT_rich Low_complexity Low_complexity 1 30 0 449 287 85 6 chr11 95073305 95073469 -53710003 + MIR SINE MIR 73 249 -13 1642 296 101 48 chr11 95073593 95073687 -53709785 + HAL1 LINE L1 436 524 -1983 2342 165 39 7 chr11 95073687 95074100 -53709372 - MSTB LTR MaLR 0 426 1 1642 296 101 48 chr11 95074100 95074748 -53708724 + HAL1 LINE L1 524 1136 -1371 2219 106 0 3 chr11 95074748 95075060 -53708412 + AluY SINE Alu 1 311 0 1642 296 101 48 chr11 95075060 95076082 -53707390 + HAL1 LINE L1 1136 2294 -213 2762 245 98 10 chr11 95076194 95077590 -53705882 - L1MC/D LINE L1 -744 5662 4359 360 211 142 0 chr11 95077598 95077802 -53705670 - L1MC/D LINE L1 -5197 1212 980 414 0 0 0 chr11 95078252 95078298 -53705174 + (TA)n Simple_repeat Simple_repeat 1 46 0 6360 60 23 0 chr11 95078298 95079153 -53704319 - L1PA7 LINE L1 -24 6130 5256 348 358 64 64 chr11 95079367 95079741 -53703731 - L2 LINE L2 -72 3200 2827 332 419 35 4 chr11 95080091 95080349 -53703123 - L2 LINE L2 -494 2820 2555 1305 161 9 0 chr11 95080356 95080573 -53702899 + L1PB4 LINE L1 5925 6143 -13 299 224 56 37 chr11 95082118 95082225 -53701247 - MIR SINE MIR -68 140 32 1327 116 39 0 chr11 95082227 95082434 -53701038 - L1PA15 LINE L1 -3 6162 5948 313 308 80 46 chr11 95082526 95082763 -53700709 + MIR SINE MIR 18 262 0 296 254 0 0 chr11 95083644 95083710 -53699762 + MLT1D LTR MaLR 1 66 -439 349 176 10 0 chr11 95083710 95083778 -53699694 + MLT2D LTR ERVL 1 56 -358 375 120 160 0 chr11 95083784 95083859 -53699613 + MLT1D LTR MaLR 419 505 0 3177 205 44 153 chr11 95083859 95084994 -53698478 + MLT1D-int LTR MaLR 1 1258 -113 3311 100 18 0 chr11 95084994 95085408 -53698064 + LTR46 LTR ERV1 1 425 -35 405 0 0 0 chr11 95085408 95085453 -53698019 + (TG)n Simple_repeat Simple_repeat 2 46 0 3311 100 18 0 chr11 95085453 95085490 -53697982 + LTR46 LTR ERV1 425 460 0 3177 205 44 153 chr11 95085490 95085654 -53697818 + MLT1D-int LTR MaLR 1258 1438 67 5318 123 18 21 chr11 95085654 95085709 -53697763 + L1MA3 LINE L1 5413 5467 -838 2564 37 0 3 chr11 95085709 95086009 -53697463 - AluY SINE Alu -12 299 1 5318 123 18 21 chr11 95086009 95086664 -53696808 + L1MA3 LINE L1 5467 6122 -183 2347 65 10 0 chr11 95086664 95086957 -53696515 - AluY SINE Alu -15 296 1 5318 123 18 21 chr11 95086957 95087141 -53696331 + L1MA3 LINE L1 6122 6305 0 3177 205 44 153 chr11 95087141 95087379 -53696093 + MLT1D-int LTR MaLR 1437 1371 0 2186 209 50 2 chr11 95087379 95087861 -53695611 + MLT1D LTR MaLR 1 505 0 384 314 90 38 chr11 95088978 95089264 -53694208 + L1MEd LINE L1 924 1300 -1190 335 300 106 38 chr11 95090310 95090790 -53692682 + L1ME3A LINE L1 4882 5394 -752 729 298 67 45 chr11 95090822 95091268 -53692204 + L1ME3A LINE L1 5462 5917 -253 793 295 134 22 chr11 95091493 95091941 -53691531 + MLT1G1 LTR MaLR 8 505 -90 312 200 12 12 chr11 95092070 95092150 -53691322 + MLT1G1 LTR MaLR 506 585 -5 303 243 86 71 chr11 95092155 95092295 -53691177 + MLT1G3-int LTR MaLR 1 142 -1229 352 380 18 5 chr11 95092301 95092525 -53690947 + MLT1G3-int LTR MaLR 295 521 -850 683 145 35 21 chr11 95092935 95093110 -53690362 + CT-rich Low_complexity Low_complexity 1 177 0 336 230 73 137 chr11 95093420 95093668 -53689804 + MLT1G3-int LTR MaLR 1107 1338 -33 316 297 88 0 chr11 95093696 95093787 -53689685 + MLT1G3 LTR MaLR 1 99 -496 1220 252 76 31 chr11 95093820 95094247 -53689225 + MLT1G3 LTR MaLR 109 561 -4 42128 58 3 1 chr11 95094656 95100790 -53682682 - L1PA4 LINE L1 -1 6154 9 788 177 0 0 chr11 95101047 95101188 -53682284 - L1MA2 LINE L1 0 6304 6164 259 315 62 8 chr11 95101856 95101986 -53681486 - L2 LINE L2 -135 3178 3042 22 56 0 0 chr11 95103158 95103194 -53680278 + AT_rich Low_complexity Low_complexity 1 36 0 344 64 0 0 chr11 95103199 95103246 -53680226 + L1MA4 LINE L1 6218 6264 -36 5436 160 41 9 chr11 95103264 95104751 -53678721 - L1MA4 LINE L1 -24 6276 4748 371 304 0 48 chr11 95105192 95105360 -53678112 + L2 LINE L2 3131 3290 -23 1302 206 26 29 chr11 95105651 95105962 -53677510 - AluJb SINE Alu -2 310 1 1412 127 84 4 chr11 95106245 95106482 -53676990 - Tigger2 DNA MER2_type 0 2718 2463 4018 170 26 11 chr11 95106542 95107284 -53676188 - Tigger2 DNA MER2_type -1965 753 1 984 89 30 0 chr11 95107529 95107697 -53675775 + Tigger2 DNA MER2_type 2463 2635 -83 2004 192 16 16 chr11 95107701 95108086 -53675386 + MLT2B1 LTR ERVL 48 432 -88 278 204 10 0 chr11 95108102 95108200 -53675272 + (TA)n Simple_repeat Simple_repeat 1 99 0 212 213 37 6 chr11 95108256 95108420 -53675052 + (TA)n Simple_repeat Simple_repeat 1 169 0 1084 174 68 51 chr11 95108480 95108715 -53674757 + AluJo SINE Alu 1 239 -73 1275 164 5 0 chr11 95108916 95109124 -53674348 + MER2 DNA MER2_type 1 209 -136 534 126 115 0 chr11 95109652 95109739 -53673733 - Tigger7 DNA MER2_type 0 2587 2491 * 812 191 63 26 chr11 95109738 95109927 -53673545 - Tigger7 DNA MER2_type -284 266 71 355 229 48 24 chr11 95109985 95110068 -53673404 - Tigger7 DNA MER2_type -648 85 1 357 319 69 9 chr11 95110132 95110248 -53673224 - MIR SINE MIR -66 142 20 202 333 101 30 chr11 95111131 95111230 -53672242 - MIR SINE MIR -155 107 2 204 368 15 0 chr11 95111881 95111949 -53671523 - MIR3 SINE MIR -43 165 97 575 288 71 42 chr11 95113159 95113399 -53670073 + MIR SINE MIR 14 260 -2 233 265 0 0 chr11 95113602 95113651 -53669821 + (CA)n Simple_repeat Simple_repeat 2 50 0 181 367 71 0 chr11 95113651 95113749 -53669723 - MIR SINE MIR -111 151 47 348 310 53 9 chr11 95113896 95114009 -53669463 - MIR SINE MIR -18 244 127 848 207 201 19 chr11 95114220 95114529 -53668943 + L1ME3A LINE L1 5801 6165 -5 464 198 77 0 chr11 95114900 95114991 -53668481 - MLT1A1 LTR MaLR -265 100 3 1157 243 16 4 chr11 95115651 95115902 -53667570 + MLT1A1 LTR MaLR 112 365 0 547 265 39 17 chr11 95117690 95117871 -53665601 + MIR SINE MIR 74 258 -4 288 313 0 52 chr11 95117883 95117998 -53665474 - MIR SINE MIR -66 196 88 410 275 135 39 chr11 95118532 95118761 -53664711 + MIR SINE MIR 12 262 0 215 395 18 18 chr11 95118829 95118938 -53664534 + L2 LINE L2 2415 2523 -791 464 197 69 150 chr11 95119959 95120192 -53663280 - MIR SINE MIR -24 238 25 281 219 31 0 chr11 95120279 95120343 -53663129 + MER94 DNA DNA 10 75 -59 205 302 0 0 chr11 95120392 95120445 -53663027 + MER5B DNA MER1_type 125 177 -1 252 346 109 0 chr11 95120491 95120592 -53662880 - L2 LINE L2 -1 3312 3201 396 333 18 0 chr11 95120963 95121077 -53662395 + L2 LINE L2 3137 3252 -20 246 32 0 0 chr11 95121085 95121116 -53662356 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 636 231 40 61 chr11 95121472 95121804 -53661668 - L1PA15-16 LINE L1 -5248 955 692 330 337 24 37 chr11 95121800 95122097 -53661375 - L1PA15-16 LINE L1 -5329 1879 1381 * 900 283 76 33 chr11 95122497 95122865 -53660607 - L1M2 LINE L1 -6464 385 2 307 73 36 0 chr11 95122943 95122998 -53660474 + (TG)n Simple_repeat Simple_repeat 2 58 0 273 261 76 0 chr11 95123614 95123706 -53659766 + MIR SINE MIR 43 141 -121 472 258 138 79 chr11 95123717 95123957 -53659515 - MLT1J LTR MaLR 0 511 258 193 354 0 10 chr11 95124067 95124163 -53659309 + MIR SINE MIR 168 262 0 188 264 11 115 chr11 95124819 95124906 -53658566 + MER5A DNA MER1_type 88 165 -24 1588 206 14 0 chr11 95124954 95125250 -53658222 - AluJo SINE Alu -12 300 1 999 239 53 38 chr11 95126081 95126345 -53657127 - L2 LINE L2 -513 2801 2534 3466 138 73 16 chr11 95126353 95126993 -53656479 - L1MA6 LINE L1 -7 6293 5617 6578 187 33 2 chr11 95126993 95128367 -53655105 + L1 LINE L1 2885 4300 -1846 342 346 12 24 chr11 95128574 95128764 -53654708 - MIR SINE MIR -59 149 18 2374 85 0 0 chr11 95129526 95129860 -53653612 + AluSg SINE Alu 1 334 0 2357 119 114 5 chr11 95131192 95131577 -53651895 + MSTA LTR MaLR 2 428 0 514 276 136 9 chr11 95131853 95132074 -53651398 + LTR33 LTR ERVL 254 502 -19 221 354 176 15 chr11 95132085 95132758 -53650714 + L2 LINE L2 2259 3051 -221 483 164 23 0 chr11 95133618 95133746 -53649726 + (TA)n Simple_repeat Simple_repeat 2 132 0 27 0 0 0 chr11 95133814 95133841 -53649631 + AT_rich Low_complexity Low_complexity 1 27 0 2354 129 42 42 chr11 95133909 95134367 -53649105 + L1MB1 LINE L1 5711 6168 0 297 135 0 0 chr11 95134963 95135015 -53648457 + (CTA)n Simple_repeat Simple_repeat 1 52 0 839 310 111 58 chr11 95135254 95136168 -53647304 - L1M4 LINE L1 -2036 4110 3149 6975 60 0 0 chr11 95136376 95137552 -53645920 - L1PA4 LINE L1 0 6155 4979 1545 220 41 44 chr11 95137767 95138180 -53645292 + MLT1C LTR MaLR 54 465 -2 192 332 66 83 chr11 95138975 95139532 -53643940 + L2 LINE L2 2301 2848 -466 1282 202 35 53 chr11 95140168 95140544 -53642928 - MLT1A2 LTR MaLR -4 370 2 391 275 150 19 chr11 95140577 95140737 -53642735 + L2 LINE L2 2622 2802 -512 207 88 0 0 chr11 95141363 95141397 -53642075 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 364 229 10 83 chr11 95141968 95142064 -53641408 - L2 LINE L2 0 3313 3225 334 149 0 0 chr11 95142116 95142163 -53641309 + Alu SINE Alu 1 47 -256 1125 149 14 28 chr11 95142227 95142441 -53641031 + L1PA16 LINE L1 5956 6166 0 3120 21 0 0 chr11 95142592 95142965 -53640507 + L1P LINE L1 4923 5295 -851 311 179 0 0 chr11 95143333 95143389 -53640083 - AluSq SINE Alu 0 301 246 1662 117 0 0 chr11 95143390 95143612 -53639860 - AluSq SINE Alu -91 222 1 767 261 8 62 chr11 95143612 95143664 -53639808 - L2 LINE L2 -599 2715 2662 2534 58 0 0 chr11 95143664 95143973 -53639499 - AluY SINE Alu -2 309 1 767 261 8 62 chr11 95143973 95144161 -53639311 - L2 LINE L2 -652 2662 2488 21 36 0 0 chr11 95145928 95145956 -53637516 + AT_rich Low_complexity Low_complexity 1 28 0 2310 103 7 0 chr11 95146507 95146808 -53636664 - AluSq SINE Alu -10 303 1 207 0 0 0 chr11 95147196 95147219 -53636253 + (A)n Simple_repeat Simple_repeat 1 23 0 840 159 140 0 chr11 95147362 95147519 -53635953 - AluSq SINE Alu -1 312 134 2305 82 3 3 chr11 95147519 95147824 -53635648 - AluY SINE Alu -6 305 1 1349 191 90 4 chr11 95148183 95148450 -53635022 - AluJo SINE Alu -22 290 1 291 296 111 26 chr11 95148553 95148717 -53634755 - MIR3 SINE MIR -53 155 10 494 184 73 9 chr11 95149140 95149249 -53634223 - AluSg/x SINE Alu -10 302 187 2410 78 0 7 chr11 95149791 95150099 -53633373 - AluSx SINE Alu -6 306 1 2040 121 14 0 chr11 95150302 95150592 -53632880 - AluSx SINE Alu -13 299 6 2396 114 114 5 chr11 95151636 95152021 -53631451 + MSTA LTR MaLR 2 428 0 492 281 136 9 chr11 95152297 95152518 -53630954 + LTR33 LTR ERVL 254 502 -19 221 354 176 15 chr11 95152529 95153202 -53630270 + L2 LINE L2 2259 3051 -221 471 164 23 0 chr11 95154062 95154190 -53629282 + (TA)n Simple_repeat Simple_repeat 1 131 0 27 0 0 0 chr11 95154258 95154285 -53629187 + AT_rich Low_complexity Low_complexity 1 27 0 2372 127 42 42 chr11 95154353 95154811 -53628661 + L1MB1 LINE L1 5711 6168 0 297 135 0 0 chr11 95155407 95155459 -53628013 + (CTA)n Simple_repeat Simple_repeat 1 52 0 839 310 111 58 chr11 95155698 95156612 -53626860 - L1M4 LINE L1 -2036 4110 3149 2868 82 5 0 chr11 95156821 95157213 -53626259 - L1PA7 LINE L1 0 6154 5761 647 361 79 19 chr11 95157363 95158048 -53625424 - L1M4 LINE L1 -3119 3027 2302 186 43 0 0 chr11 95158327 95158350 -53625122 + (TTG)n Simple_repeat Simple_repeat 2 24 0 765 147 0 0 chr11 95158373 95158489 -53624983 - AluJb SINE Alu -169 143 28 2315 52 13 32 chr11 95159440 95159750 -53623722 + AluY SINE Alu 1 304 -7 224 328 0 25 chr11 95161361 95161483 -53621989 + (CATATA)n Simple_repeat Simple_repeat 2 120 0 199 77 26 26 chr11 95165335 95165374 -53618098 + (GAAA)n Simple_repeat Simple_repeat 1 39 0 2093 128 3 0 chr11 95167760 95168065 -53615407 - AluSq SINE Alu -7 306 1 265 333 108 8 chr11 95168250 95168370 -53615102 - MER5A DNA MER1_type -3 186 55 183 196 20 98 chr11 95169170 95169221 -53614251 + MIR SINE MIR 23 69 -139 204 354 126 26 chr11 95170285 95170587 -53612885 + L2 LINE L2 2939 3270 -2 213 39 0 0 chr11 95170987 95171013 -53612459 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 1559 145 11 0 chr11 95172584 95172860 -53610612 + L1MA5 LINE L1 6021 6299 -1 288 343 146 7 chr11 95173283 95173420 -53610052 + L2 LINE L2 3116 3271 -1 247 322 116 0 chr11 95173446 95173567 -53609905 - MIR SINE MIR -99 163 29 306 0 0 0 chr11 95174377 95174411 -53609061 + (CA)n Simple_repeat Simple_repeat 2 35 0 21 57 0 0 chr11 95174671 95174706 -53608766 + AT_rich Low_complexity Low_complexity 1 35 0 256 269 9 28 chr11 95175089 95175197 -53608275 + (TATATG)n Simple_repeat Simple_repeat 3 108 0 30 59 0 0 chr11 95175386 95175437 -53608035 + AT_rich Low_complexity Low_complexity 1 51 0 23 0 0 0 chr11 95175677 95175700 -53607772 + AT_rich Low_complexity Low_complexity 1 23 0 211 333 0 28 chr11 95176691 95176763 -53606709 + MIR SINE MIR 6 75 -187 291 241 25 38 chr11 95176770 95176849 -53606623 + MIR SINE MIR 179 256 -6 518 314 43 11 chr11 95177071 95177259 -53606213 - MIR SINE MIR -8 254 61 283 281 34 41 chr11 95177305 95177451 -53606021 + MIR SINE MIR 92 236 -26 257 313 68 41 chr11 95177818 95177965 -53605507 + L2 LINE L2 3122 3272 0 2128 104 3 3 chr11 95178384 95178672 -53604800 + AluSg SINE Alu 1 288 -22 305 24 24 0 chr11 95179811 95179853 -53603619 + (TC)n Simple_repeat Simple_repeat 2 44 0 * 369 0 0 0 chr11 95179852 95179893 -53603579 + (TG)n Simple_repeat Simple_repeat 2 42 0 305 303 91 10 chr11 95180949 95181048 -53602424 + MER91C DNA MER1_type 1 107 -33 2153 132 3 0 chr11 95181421 95181766 -53601706 - AluSq SINE Alu 0 346 1 646 338 42 8 chr11 95182990 95183230 -53600242 - MIR SINE MIR -13 249 2 181 308 90 13 chr11 95183620 95183698 -53599774 - MIR SINE MIR -109 153 70 4112 137 13 0 chr11 95184705 95185333 -53598139 + L1PA15 LINE L1 5509 6144 -21 21 71 0 0 chr11 95185826 95185868 -53597604 + AT_rich Low_complexity Low_complexity 1 42 0 252 186 0 0 chr11 95185898 95185941 -53597531 - MIR SINE MIR -34 228 186 321 313 178 10 chr11 95185995 95186203 -53597269 - MIR SINE MIR 0 262 20 208 298 223 16 chr11 95186412 95186533 -53596939 - L2 LINE L2 -6 3266 3121 584 324 118 25 chr11 95186897 95187378 -53596094 - L2 LINE L2 -642 2672 2147 395 360 94 22 chr11 95188395 95188670 -53594802 - L2 LINE L2 -2818 496 202 1036 282 88 58 chr11 95190119 95190912 -53592560 + L2 LINE L2 2497 3307 -6 7349 114 19 0 chr11 95190962 95191994 -53591478 + THE1B-int LTR MaLR 529 1580 0 2069 133 11 43 chr11 95191994 95192370 -53591102 + THE1B LTR MaLR 1 364 0 556 261 137 70 chr11 95192528 95192900 -53590572 + MLT1L LTR MaLR 214 610 -5 220 260 0 0 chr11 95192995 95193045 -53590427 + (TG)n Simple_repeat Simple_repeat 1 50 0 486 304 68 0 chr11 95194163 95194324 -53589148 - MIR SINE MIR -71 191 20 339 261 54 65 chr11 95195246 95195430 -53588042 + L1ME LINE L1 5618 5799 -322 747 224 47 0 chr11 95195921 95196091 -53587381 - MIR SINE MIR 0 262 85 738 227 43 0 chr11 95196414 95196577 -53586895 + MER69A DNA AcHobo 3 172 -5 215 363 82 23 chr11 95197127 95197298 -53586174 + L2 LINE L2 3114 3294 -19 2388 81 0 31 chr11 95197976 95198297 -53585175 - AluY SINE Alu 0 311 1 223 252 18 0 chr11 95198652 95198763 -53584709 + (CATATA)n Simple_repeat Simple_repeat 3 115 0 316 379 53 6 chr11 95198817 95198986 -53584486 + MIR SINE MIR 2 178 -84 633 275 11 28 chr11 95199002 95199025 -53584447 - MIR SINE MIR -72 190 168 1772 144 42 63 chr11 95199025 95199406 -53584066 + THE1C LTR MaLR 3 375 0 633 275 11 28 chr11 95199406 95199564 -53583908 - MIR SINE MIR -94 168 12 247 314 57 86 chr11 95199852 95199992 -53583480 - L2 LINE L2 -15 3257 3122 2062 126 3 0 chr11 95200035 95200321 -53583151 + AluSx SINE Alu 2 288 -24 223 328 60 0 chr11 95201029 95201096 -53582376 + L2 LINE L2 3170 3240 -32 1783 174 72 19 chr11 95201106 95201325 -53582147 + MSTD LTR MaLR 1 250 -146 207 100 0 0 chr11 95201325 95201355 -53582117 + (CA)n Simple_repeat Simple_repeat 1 30 0 1783 174 72 19 chr11 95201355 95201509 -53581963 + MSTD LTR MaLR 250 394 -2 274 343 45 8 chr11 95202271 95202405 -53581067 + L2 LINE L2 1873 2011 -1303 248 306 72 9 chr11 95202548 95202659 -53580813 + L2 LINE L2 2293 2410 -904 762 355 95 29 chr11 95202770 95203661 -53579811 + L2 LINE L2 2340 3306 -7 205 326 179 23 chr11 95204489 95204707 -53578765 - L2 LINE L2 -963 2351 2100 294 302 122 29 chr11 95204929 95205134 -53578338 + MIR SINE MIR 1 224 -38 1376 196 91 4 chr11 95206431 95206707 -53576765 + AluJb SINE Alu 1 300 -12 376 358 136 35 chr11 95206955 95207324 -53576148 - L2 LINE L2 -462 2852 2447 771 305 24 0 chr11 95208107 95208320 -53575152 + MIR SINE MIR 12 229 -33 532 299 39 0 chr11 95208327 95208481 -53574991 + MIR SINE MIR 103 262 0 443 284 130 19 chr11 95208858 95209073 -53574399 + MIR SINE MIR 12 250 -12 1514 210 14 7 chr11 95209283 95209574 -53573898 - AluJo SINE Alu -17 295 3 2305 159 86 6 chr11 95211241 95211707 -53571765 - MLT1D LTR MaLR 0 505 3 289 277 73 73 chr11 95211738 95211944 -53571528 - L3 LINE CR1 -545 1032 827 442 328 46 11 chr11 95212265 95212439 -53571033 + MIR SINE MIR 2 181 -81 443 226 8 57 chr11 95212460 95212586 -53570886 + MER5A DNA MER1_type 6 110 -68 2229 133 0 0 chr11 95213561 95213870 -53569602 - AluSg SINE Alu -1 309 1 210 333 24 24 chr11 95213955 95214039 -53569433 - MIR SINE MIR -86 122 39 496 313 27 58 chr11 95214296 95214555 -53568917 + MIR SINE MIR 2 252 -10 395 339 74 58 chr11 95214835 95215004 -53568468 + L2 LINE L2 2827 2992 -280 1081 56 14 0 chr11 95215004 95215146 -53568326 - L1PA7 LINE L1 0 6154 6011 395 339 74 58 chr11 95215146 95215407 -53568065 + L2 LINE L2 2992 3264 -8 1871 106 4 0 chr11 95215821 95216075 -53567397 + AluSc SINE Alu 51 305 -4 812 271 38 8 chr11 95216614 95216854 -53566618 + MIR SINE MIR 6 252 -10 263 339 87 0 chr11 95216924 95217039 -53566433 - L2 LINE L2 0 3313 3189 203 253 58 103 chr11 95217665 95217752 -53565720 + L2 LINE L2 3208 3290 -23 181 216 78 59 chr11 95217951 95218002 -53565470 - L2 LINE L2 -20 3252 3201 235 215 46 0 chr11 95218066 95218131 -53565341 + L2 LINE L2 3203 3270 -2 285 325 42 63 chr11 95219618 95219809 -53563663 + MIR SINE MIR 64 250 -12 214 333 0 0 chr11 95219865 95219928 -53563544 + CT-rich Low_complexity Low_complexity 2 64 0 226 284 49 25 chr11 95220085 95220166 -53563306 + MLT1L LTR MaLR 213 295 -320 425 246 288 5 chr11 95220372 95220563 -53562909 - MIR SINE MIR -10 252 8 354 272 0 148 chr11 95221906 95222075 -53561397 - L2 LINE L2 -4 3268 3125 724 284 67 13 chr11 95222265 95222490 -53560982 - MIR SINE MIR -3 259 23 192 342 0 13 chr11 95222594 95222670 -53560802 - MIR SINE MIR -187 75 1 185 326 81 47 chr11 95225422 95225508 -53557964 - L2 LINE L2 -21 3292 3204 603 189 15 129 chr11 95226290 95226491 -53556981 - MER5B DNA MER1_type 0 178 1 633 297 110 54 chr11 95226604 95227086 -53556386 + MLT1J LTR MaLR 1 509 -2 294 113 84 0 chr11 95227255 95227326 -53556146 + GA-rich Low_complexity Low_complexity 4 80 0 198 0 0 0 chr11 95227800 95227822 -53555650 + (TA)n Simple_repeat Simple_repeat 2 23 0 1903 114 52 7 chr11 95227822 95228111 -53555361 - AluSx SINE Alu -5 307 6 22 0 10 0 chr11 95228122 95228189 -53555283 + AT_rich Low_complexity Low_complexity 1 22 0 258 379 23 8 chr11 95228756 95228888 -53554584 - MER5A DNA MER1_type -1 188 55 233 337 22 11 chr11 95228927 95229016 -53554456 - L3 LINE CR1 -32 1545 1456 24 0 0 0 chr11 95230146 95230170 -53553302 + AT_rich Low_complexity Low_complexity 1 24 0 373 320 0 0 chr11 95231345 95231448 -53552024 + L2 LINE L2 3134 3236 -36 2266 107 0 0 chr11 95231739 95232029 -53551443 + AluSg SINE Alu 4 293 -17 192 77 0 0 chr11 95232225 95232251 -53551221 + (T)n Simple_repeat Simple_repeat 1 26 0 312 287 148 8 chr11 95232477 95232599 -53550873 - MIR SINE MIR -7 255 117 235 275 29 0 chr11 95232737 95232806 -53550666 + MER117 DNA MER1_type 103 173 -24 424 289 63 89 chr11 95233419 95233734 -53549738 + L2 LINE L2 2966 3272 0 211 254 36 0 chr11 95233827 95233882 -53549590 + MIR SINE MIR 111 167 -95 322 321 9 0 chr11 95234816 95234922 -53548550 - MIR SINE MIR -34 228 122 191 266 138 32 chr11 95236246 95236340 -53547132 + MIR SINE MIR 50 153 -109 29 28 0 0 chr11 95236347 95236383 -53547089 + AT_rich Low_complexity Low_complexity 1 36 0 2263 286 79 38 chr11 95236511 95237656 -53545816 - L2 LINE L2 0 3313 2118 21 0 0 0 chr11 95237735 95237756 -53545716 + AT_rich Low_complexity Low_complexity 1 21 0 1667 98 126 20 chr11 95238108 95238398 -53545074 + AluY SINE Alu 1 317 0 493 345 0 12 chr11 95238573 95238744 -53544728 - MIR SINE MIR -86 176 8 225 254 17 0 chr11 95239276 95239335 -53544137 + CT-rich Low_complexity Low_complexity 3 62 0 249 319 94 36 chr11 95239397 95239535 -53543937 + L2 LINE L2 3125 3270 -2 199 317 79 30 chr11 95239620 95239721 -53543751 + L2 LINE L2 3208 3313 0 21 36 0 0 chr11 95239838 95239866 -53543606 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr11 95241352 95241378 -53542094 + AT_rich Low_complexity Low_complexity 1 26 0 297 0 0 0 chr11 95241455 95241488 -53541984 + (CA)n Simple_repeat Simple_repeat 2 34 0 226 244 114 57 chr11 95241601 95241666 -53541806 - HAL1 LINE L1 -347 2160 2100 212 0 36 0 chr11 95241666 95241694 -53541778 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1941 138 0 34 chr11 95241696 95241992 -53541480 - AluSx SINE Alu -25 287 2 226 244 114 57 chr11 95241992 95242046 -53541426 - HAL1 LINE L1 -407 2100 2031 349 340 0 11 chr11 95242049 95242143 -53541329 + L2 LINE L2 3178 3270 -43 954 241 85 27 chr11 95242144 95242621 -53540851 + MER39 LTR ERV1 2 707 0 203 152 0 0 chr11 95242655 95242688 -53540784 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 203 250 0 0 chr11 95243024 95243064 -53540408 + L2 LINE L2 3203 3242 -71 189 0 0 0 chr11 95243357 95243378 -53540094 + (CA)n Simple_repeat Simple_repeat 2 22 0 298 267 30 20 chr11 95243612 95243713 -53539759 + MIR SINE MIR 161 262 0 238 293 100 43 chr11 95244097 95244237 -53539235 + L2 LINE L2 2710 2857 -457 627 365 28 63 chr11 95244256 95244714 -53538758 - L2 LINE L2 -13 3259 2818 796 243 67 49 chr11 95244798 95245274 -53538198 + MER39 LTR ERV1 1 707 0 23 0 0 0 chr11 95245869 95245892 -53537580 + AT_rich Low_complexity Low_complexity 1 23 0 187 260 330 10 chr11 95246514 95246614 -53536858 - L2 LINE L2 -2 3270 3139 28 29 0 0 chr11 95248111 95248146 -53535326 + AT_rich Low_complexity Low_complexity 1 35 0 250 271 49 49 chr11 95249114 95249236 -53534236 - MIR SINE MIR -28 234 113 383 255 64 88 chr11 95249365 95249569 -53533903 + MIR SINE MIR 20 218 -44 1647 196 0 22 chr11 95250052 95250363 -53533109 - AluJb SINE Alu -4 308 5 2298 80 0 10 chr11 95250643 95250943 -53532529 + AluSc SINE Alu 1 297 -12 321 155 0 0 chr11 95250975 95251033 -53532439 + CT-rich Low_complexity Low_complexity 3 60 0 2272 78 10 3 chr11 95251033 95251341 -53532131 - AluY SINE Alu -1 310 1 1132 170 13 70 chr11 95251574 95251803 -53531669 - MER58A DNA MER1_type 0 224 9 3285 125 19 0 chr11 95252368 95252897 -53530575 - L1MA5A LINE L1 -2 6295 5757 25 75 0 0 chr11 95254084 95254137 -53529335 + AT_rich Low_complexity Low_complexity 1 53 0 344 341 52 7 chr11 95256145 95256280 -53527192 - MIR3 SINE MIR -49 159 19 2463 63 7 0 chr11 95256981 95257282 -53526190 + AluY SINE Alu 1 303 -8 480 161 0 25 chr11 95257451 95257569 -53525903 + CT-rich Low_complexity Low_complexity 1 115 0 31 0 0 0 chr11 95257766 95257797 -53525675 + AT_rich Low_complexity Low_complexity 1 31 0 239 370 34 8 chr11 95258364 95258483 -53524989 + MIR3 SINE MIR 44 165 -43 228 163 0 0 chr11 95258633 95258676 -53524796 + CT-rich Low_complexity Low_complexity 2 44 0 349 269 123 40 chr11 95258678 95258931 -53524541 - L1MEc LINE L1 -4268 2128 1855 728 274 102 0 chr11 95259036 95259233 -53524239 - MER58A DNA MER1_type -2 222 6 739 180 104 104 chr11 95259273 95259589 -53523883 + MER46C DNA MER2_type 2 317 -21 520 308 158 9 chr11 95259920 95260141 -53523331 + MIR SINE MIR 9 262 0 364 310 135 71 chr11 95263057 95263491 -53519981 - L2 LINE L2 -4 3268 2779 1993 117 23 13 chr11 95263491 95263799 -53519673 + AluSq SINE Alu 1 311 -2 364 310 135 71 chr11 95263799 95264044 -53519428 - L2 LINE L2 -493 2779 2551 1715 261 57 54 chr11 95264457 95265067 -53518405 + L2 LINE L2 2366 2973 -340 2482 184 49 0 chr11 95265067 95265517 -53517955 + MER70A LTR ERVL 1 472 0 1715 261 57 54 chr11 95265517 95265764 -53517708 + L2 LINE L2 2973 3224 -89 2293 86 0 10 chr11 95265764 95266068 -53517404 - AluY SINE Alu -10 301 1 1715 261 57 54 chr11 95266068 95266158 -53517314 + L2 LINE L2 3224 3312 -1 2557 175 22 52 chr11 95266237 95266792 -53516680 - L1PA16 LINE L1 -1 6165 5628 10523 218 15 7 chr11 95266794 95269194 -53514278 - L1PA16 LINE L1 -801 5345 2927 209 56 0 28 chr11 95269194 95269230 -53514242 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 6941 140 23 6 chr11 95269230 95270037 -53513435 - L1PA2 LINE L1 -16 6139 5347 947 28 0 0 chr11 95270037 95270144 -53513328 - U6 snRNA snRNA 0 107 1 6941 140 23 6 chr11 95270144 95270969 -53512503 - L1PA2 LINE L1 -808 5347 2096 313 312 92 35 chr11 95271416 95271589 -53511883 + MIR SINE MIR 48 230 -32 221 351 0 0 chr11 95271980 95272057 -53511415 - MIR SINE MIR -112 150 74 189 74 0 0 chr11 95272493 95272520 -53510952 + (TAA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr11 95272881 95272902 -53510570 + AT_rich Low_complexity Low_complexity 1 21 0 498 282 108 26 chr11 95273185 95273380 -53510092 + MIR SINE MIR 2 212 -50 681 293 259 17 chr11 95273470 95273938 -53509534 - L2 LINE L2 -337 2977 2397 341 331 50 0 chr11 95274109 95274230 -53509242 + L2 LINE L2 3187 3313 0 348 326 74 23 chr11 95274458 95274782 -53508690 + L1MDb LINE L1 34 351 -6189 408 229 34 112 chr11 95275337 95275516 -53507956 + L1MDb LINE L1 918 1082 -5461 311 357 51 0 chr11 95275738 95275836 -53507636 - L2 LINE L2 -2 3270 3168 228 196 0 0 chr11 95276460 95276506 -53506966 - MIR3 SINE MIR -7 201 156 464 193 0 0 chr11 95276586 95276674 -53506798 + Charlie8 DNA MER1_type 114 201 -2216 355 298 97 0 chr11 95276714 95276828 -53506644 - MIR3 SINE MIR -48 160 36 198 361 76 17 chr11 95277378 95277497 -53505975 + L2 LINE L2 3103 3228 -44 219 366 12 12 chr11 95277595 95277677 -53505795 + L2 LINE L2 3192 3273 -40 201 211 141 0 chr11 95278672 95278743 -53504729 + MIR SINE MIR 123 203 -59 297 333 66 27 chr11 95279422 95279605 -53503867 - MIR SINE MIR -37 225 36 260 295 51 0 chr11 95279898 95279976 -53503496 - L2 LINE L2 0 3313 3232 616 297 65 16 chr11 95280039 95280285 -53503187 + MIR SINE MIR 4 261 -1 1836 103 0 126 chr11 95280311 95280659 -53502813 - AluSq SINE Alu -9 304 1 891 201 0 0 chr11 95281765 95281924 -53501548 + FRAM SINE Alu 1 159 -17 846 204 6 0 chr11 95282856 95283023 -53500449 + L1PA16 LINE L1 5996 6163 -3 274 232 0 0 chr11 95283358 95283414 -53500058 - MIR SINE MIR -142 120 65 875 230 49 110 chr11 95283857 95284266 -53499206 + MLT1B LTR MaLR 1 384 -6 725 311 14 5 chr11 95284269 95284488 -53498984 - MIR SINE MIR -41 221 1 184 347 113 13 chr11 95284795 95284945 -53498527 + L2 LINE L2 2329 2493 -821 991 270 128 18 chr11 95285935 95286335 -53497137 - MLT1J2 LTR MaLR -6 444 1 1144 297 77 20 chr11 95287013 95287615 -53495857 + L2 LINE L2 2678 3313 0 405 0 0 0 chr11 95287768 95287813 -53495659 + (CA)n Simple_repeat Simple_repeat 2 46 0 2156 102 3 0 chr11 95287815 95288099 -53495373 - AluSp SINE Alu -28 285 1 405 343 114 0 chr11 95288729 95288904 -53494568 - MIR SINE MIR -55 207 13 565 218 7 0 chr11 95289192 95289334 -53494138 - L1MA10 LINE L1 -2 6332 6190 554 194 23 31 chr11 95289339 95289468 -53494004 - L1ME1 LINE L1 -141 6094 5967 1287 176 66 4 chr11 95289469 95289713 -53493759 - AluJo SINE Alu -10 302 44 1557 243 57 8 chr11 95289714 95290236 -53493236 - L1ME1 LINE L1 -274 5959 5396 567 243 24 2 chr11 95290234 95290373 -53493099 + L1ME LINE L1 5323 5459 -707 * 694 221 77 5 chr11 95290519 95290727 -53492745 - L1ME1 LINE L1 -924 5291 5069 1355 196 0 72 chr11 95290727 95291033 -53492439 - AluJo SINE Alu -18 294 11 23 33 0 0 chr11 95291042 95291072 -53492400 + AT_rich Low_complexity Low_complexity 1 30 0 5906 150 91 7 chr11 95291072 95292207 -53491265 - Tigger3b DNA MER2_type 0 1231 2 2644 157 15 47 chr11 95292301 95293135 -53490337 - L1M2 LINE L1 -563 5749 4925 390 299 67 20 chr11 95293133 95293387 -53490085 - L1ME1 LINE L1 -1758 4457 4192 * 1968 115 7 46 chr11 95293453 95293757 -53489715 + AluSx SINE Alu 2 293 -19 276 286 12 0 chr11 95293846 95293930 -53489542 - L1ME1 LINE L1 -2289 3926 3842 3845 25 0 0 chr11 95293938 95294386 -53489086 - L1PA3 LINE L1 -1157 4989 4542 7712 25 0 0 chr11 95294386 95295538 -53487934 + L1PA3 LINE L1 5001 6152 -3 1857 255 43 36 chr11 95295550 95295639 -53487833 - L1ME1 LINE L1 -2376 3839 3752 243 0 0 0 chr11 95295639 95295666 -53487806 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1857 255 43 36 chr11 95295666 95296318 -53487154 - L1ME1 LINE L1 -2463 3752 3093 462 281 28 31 chr11 95296438 95296762 -53486710 - L1ME1 LINE L1 -5949 447 41 1415 73 0 0 chr11 95296814 95296991 -53486481 - AluY SINE Alu -16 295 119 2427 204 66 36 chr11 95297597 95298176 -53485296 - MER21A LTR ERV1 -17 914 319 2257 157 27 17 chr11 95298203 95298616 -53484856 - MSTA LTR MaLR -11 417 1 8812 187 10 4 chr11 95298618 95300256 -53483216 - MSTA-int LTR MaLR -2 1649 1 2281 166 26 26 chr11 95300256 95300684 -53482788 - MSTA LTR MaLR 0 428 1 479 200 12 0 chr11 95300684 95300769 -53482703 - MER39 LTR ERV1 -303 404 319 21 0 0 0 chr11 95300901 95300922 -53482550 + AT_rich Low_complexity Low_complexity 1 21 0 318 361 57 16 chr11 95301574 95301696 -53481776 - L2 LINE L2 -3 3269 3143 207 332 66 83 chr11 95302742 95303299 -53480173 - L2 LINE L2 -466 2848 2301 1551 220 41 44 chr11 95304094 95304507 -53478965 - MLT1C LTR MaLR -2 465 54 7804 13 1 0 chr11 95304722 95305896 -53477576 + L1PA2 LINE L1 4979 6153 -2 567 120 70 7 chr11 95306270 95306553 -53476919 + (TA)n Simple_repeat Simple_repeat 1 300 0 347 92 104 12 chr11 95306573 95306737 -53476735 + (TA)n Simple_repeat Simple_repeat 1 179 0 557 288 24 40 chr11 95306790 95307103 -53476369 + L1ME LINE L1 1772 2109 -4471 460 262 88 3 chr11 95307517 95307805 -53475667 + L1ME LINE L1 5621 5929 -627 343 344 128 0 chr11 95308012 95308192 -53475280 + MIR SINE MIR 7 209 -53 199 229 14 57 chr11 95309202 95309272 -53474200 - MER5C DNA MER1_type -240 84 18 316 328 55 38 chr11 95309679 95309862 -53473610 + L2 LINE L2 3128 3313 0 218 351 45 9 chr11 95309978 95310089 -53473383 - L2 LINE L2 0 3272 3158 26 64 0 0 chr11 95311014 95311061 -53472411 + AT_rich Low_complexity Low_complexity 1 47 0 1467 255 53 3 chr11 95313588 95313945 -53469527 - MER82 DNA MER2_type 0 653 279 876 236 17 46 chr11 95313945 95314249 -53469223 - MER2 DNA MER2_type 0 345 6 1316 209 50 0 chr11 95314261 95314538 -53468934 - MER82 DNA MER2_type -362 291 1 327 380 55 6 chr11 95315046 95315209 -53468263 - MLT1I LTR MaLR -14 395 225 1280 155 79 14 chr11 95315224 95315498 -53467974 + MER1B DNA MER1_type 1 329 0 592 258 19 19 chr11 95315498 95315636 -53467836 - MLT1I LTR MaLR -197 212 75 22 88 0 0 chr11 95316812 95316869 -53466603 + AT_rich Low_complexity Low_complexity 1 57 0 235 226 366 0 chr11 95317258 95317351 -53466121 - L2 LINE L2 0 3272 3146 227 375 12 0 chr11 95317996 95318076 -53465396 + L2 LINE L2 2891 2971 -301 286 354 42 0 chr11 95318222 95318318 -53465154 - L2 LINE L2 -18 3295 3196 249 368 0 0 chr11 95318404 95318472 -53465000 + L2 LINE L2 3190 3257 -15 403 194 204 0 chr11 95318959 95319082 -53464390 - FLAM_A SINE Alu 0 143 1 190 284 123 25 chr11 95319455 95319536 -53463936 - MIR SINE MIR -137 125 37 2179 253 17 40 chr11 95319681 95320314 -53463158 + MLT1E3 LTR MaLR 5 623 -1 1636 179 14 42 chr11 95321508 95321676 -53461796 - MER2 DNA MER2_type 0 344 190 2136 125 0 10 chr11 95321676 95321988 -53461484 - AluSq SINE Alu -4 309 1 1636 179 14 42 chr11 95321988 95322172 -53461300 - MER2 DNA MER2_type -154 190 2 208 305 49 12 chr11 95322185 95322267 -53461205 - MIR SINE MIR -96 166 82 387 0 0 0 chr11 95322404 95322447 -53461025 + (CA)n Simple_repeat Simple_repeat 2 44 0 2270 187 40 2 chr11 95323442 95323864 -53459608 - MSTB2 LTR MaLR -4 453 16 374 225 18 107 chr11 95324524 95324758 -53458714 + L1ME3A LINE L1 1269 1562 -4820 225 255 93 107 chr11 95324746 95324854 -53458618 + L1ME3A LINE L1 3309 3417 -2965 * 2094 115 7 3 chr11 95324854 95325159 -53458313 + AluSg SINE Alu 1 306 -4 225 255 93 107 chr11 95325159 95325455 -53458017 + L1ME3A LINE L1 3417 3716 -2666 198 0 0 0 chr11 95325455 95325477 -53457995 + (CA)n Simple_repeat Simple_repeat 1 22 0 225 255 93 107 chr11 95325477 95325542 -53457930 + L1ME3A LINE L1 3716 3780 -2602 360 0 0 0 chr11 95325542 95325582 -53457890 + (CA)n Simple_repeat Simple_repeat 1 40 0 225 255 93 107 chr11 95325582 95325875 -53457597 + L1ME3A LINE L1 3780 4062 -2320 1687 143 28 34 chr11 95325885 95326206 -53457266 - L1MB1 LINE L1 -3 6165 5847 1320 153 99 0 chr11 95326207 95326430 -53457042 + L1M3 LINE L1 5549 5793 -375 1044 294 122 38 chr11 95326491 95327716 -53455756 + L1ME3A LINE L1 4137 5464 -918 218 32 32 0 chr11 95327719 95327750 -53455722 + (TG)n Simple_repeat Simple_repeat 2 33 0 2104 294 26 33 chr11 95327809 95328253 -53455219 + L1ME3A LINE L1 5490 5935 -471 2363 154 49 9 chr11 95328253 95328720 -53454752 + LTR19A LTR ERV1 1 486 0 2104 294 26 33 chr11 95328720 95329189 -53454283 + L1ME3A LINE L1 5935 6397 -9 195 229 0 0 chr11 95329529 95329564 -53453908 - MIR SINE MIR -7 255 221 193 265 194 31 chr11 95329532 95329630 -53453842 - L2 LINE L2 -16 3297 3184 * 366 301 11 0 chr11 95330080 95330173 -53453299 - L2 LINE L2 -6 3266 3173 602 347 122 26 chr11 95330418 95330836 -53452636 - L2 LINE L2 -683 2631 2174 495 364 128 35 chr11 95331388 95332207 -53451265 + L2 LINE L2 1952 2846 -468 222 306 113 0 chr11 95333567 95333629 -53449843 - L2 LINE L2 -12 3260 3192 283 258 175 0 chr11 95333675 95333772 -53449700 + L2 LINE L2 3200 3313 0 242 364 11 0 chr11 95334044 95334132 -53449340 - L2 LINE L2 0 3272 3184 276 285 89 82 chr11 95334556 95334837 -53448635 + MLT1K LTR MaLR 159 441 -147 1456 232 0 0 chr11 95335306 95335603 -53447869 - AluJo SINE Alu -15 297 1 475 375 108 29 chr11 95336092 95336535 -53446937 - L2 LINE L2 -345 2969 2492 208 91 45 0 chr11 95336762 95336806 -53446666 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 3249 42 5 10 chr11 95337333 95337742 -53445730 - L1PA5 LINE L1 -5 6149 5743 1992 25 4 4 chr11 95337742 95337979 -53445493 + L1PA5 LINE L1 5509 5745 -409 2287 107 3 0 chr11 95338823 95339132 -53444340 - AluSg SINE Alu 0 310 1 318 253 0 32 chr11 95339408 95339503 -53443969 + L2 LINE L2 2197 2288 -1026 237 262 16 0 chr11 95340072 95340133 -53443339 + CT-rich Low_complexity Low_complexity 2 63 0 186 194 0 0 chr11 95340142 95340173 -53443299 + L2 LINE L2 3261 3291 -22 1330 336 72 16 chr11 95341001 95341884 -53441588 - L2 LINE L2 -15 3298 2365 2132 112 47 12 chr11 95341889 95342227 -53441245 + THE1A LTR MaLR 3 352 -3 11320 99 5 2 chr11 95342232 95343806 -53439666 + THE1A-int LTR MaLR 2 1580 0 2109 104 62 12 chr11 95343806 95344144 -53439328 + THE1A LTR MaLR 1 355 0 2220 97 0 10 chr11 95344456 95344764 -53438708 + AluY SINE Alu 1 305 -6 216 0 0 0 chr11 95344765 95344789 -53438683 + (CA)n Simple_repeat Simple_repeat 2 25 0 337 200 44 22 chr11 95344789 95344879 -53438593 - L1MC4 LINE L1 -1339 6703 6612 453 0 78 0 chr11 95344879 95344956 -53438516 + (TA)n Simple_repeat Simple_repeat 1 83 0 25 31 0 0 chr11 95346096 95346128 -53437344 + AT_rich Low_complexity Low_complexity 1 32 0 242 354 46 10 chr11 95346135 95346330 -53437142 + MIR SINE MIR 9 210 -52 237 204 185 0 chr11 95346397 95346451 -53437021 + L2 LINE L2 3250 3313 0 365 203 68 0 chr11 95346541 95346615 -53436857 - L2 LINE L2 -5 3267 3189 295 335 129 6 chr11 95347281 95347451 -53436021 - L2 LINE L2 -2 3311 3121 22 35 0 0 chr11 95347869 95347898 -53435574 + AT_rich Low_complexity Low_complexity 1 29 0 255 380 84 64 chr11 95349418 95349715 -53433757 + L2 LINE L2 2963 3265 -7 186 133 0 0 chr11 95349735 95349765 -53433707 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 315 0 0 0 chr11 95350488 95350523 -53432949 + (CAATT)n Simple_repeat Simple_repeat 1 35 0 200 266 16 31 chr11 95350524 95350588 -53432884 - L2 LINE L2 -12 3301 3239 338 315 134 0 chr11 95351310 95351459 -53432013 + MIR SINE MIR 1 169 -93 3310 171 81 44 chr11 95353082 95353825 -53429647 - LTR1 LTR ERV1 0 785 16 548 276 24 18 chr11 95354006 95354176 -53429296 + MIR SINE MIR 92 262 0 184 259 277 0 chr11 95354265 95354377 -53429095 - L3b LINE CR1 -119 1464 1322 1107 352 74 16 chr11 95355218 95355825 -53427647 + L2 LINE L2 2414 3058 -214 399 294 123 27 chr11 95355887 95356033 -53427439 + ERVL LTR ERVL 4143 4302 -1462 188 395 109 8 chr11 95356074 95356193 -53427279 + L2 LINE L2 3141 3271 -1 211 219 47 16 chr11 95356351 95356415 -53427057 - MIR SINE MIR -87 175 110 182 0 107 0 chr11 95356446 95356474 -53426998 + A-rich Low_complexity Low_complexity 5 35 0 449 267 30 84 chr11 95356760 95357022 -53426450 + LTR16A LTR ERVL 1 249 -201 1603 341 66 50 chr11 95357024 95358556 -53424916 + ERVL LTR ERVL 3474 5029 -735 1068 235 46 0 chr11 95358957 95359195 -53424277 - MER4D LTR ERV1 -114 789 541 1494 184 17 14 chr11 95359222 95359515 -53423957 - MER49 LTR ERV1 -629 294 1 453 284 146 21 chr11 95359575 95359817 -53423655 + LTR16A LTR ERVL 134 397 -53 1670 220 13 18 chr11 95359980 95360371 -53423101 + MLT1B LTR MaLR 1 389 -1 987 120 0 14 chr11 95360887 95361029 -53422443 + THE1C LTR MaLR 3 142 -233 278 324 130 14 chr11 95361163 95361253 -53422219 - MIR SINE MIR -8 254 176 1402 209 28 62 chr11 95361253 95361640 -53421832 - MLT1A2 LTR MaLR 0 374 1 278 324 130 14 chr11 95361640 95361765 -53421707 - MIR SINE MIR -86 176 14 287 276 13 13 chr11 95362050 95362126 -53421346 - L2 LINE L2 -35 3278 3203 531 293 6 6 chr11 95362557 95362731 -53420741 - MER5B DNA MER1_type -4 174 1 793 254 33 20 chr11 95363252 95363496 -53419976 - MIR SINE MIR -6 256 10 181 323 92 0 chr11 95363788 95363853 -53419619 + L2 LINE L2 3155 3225 -47 260 253 127 0 chr11 95363898 95363977 -53419495 + MER94 DNA DNA 11 99 -35 542 273 143 9 chr11 95364468 95364684 -53418788 + MIR SINE MIR 7 251 -11 975 168 7 0 chr11 95364909 95365064 -53418408 - MER2 DNA MER2_type -189 156 1 936 275 114 23 chr11 95365311 95365784 -53417688 + MER113 DNA MER1_type? 6 521 0 249 339 78 26 chr11 95365808 95366038 -53417434 + MIR SINE MIR 8 249 -13 23 0 0 0 chr11 95366051 95366074 -53417398 + AT_rich Low_complexity Low_complexity 1 23 0 250 259 65 56 chr11 95367783 95367891 -53415581 + MIR SINE MIR 20 128 -134 187 406 31 0 chr11 95368127 95368223 -53415249 - L2 LINE L2 -338 2976 2878 342 233 30 90 chr11 95368325 95368458 -53415014 - LTR33 LTR ERVL -14 507 383 612 316 14 33 chr11 95368580 95368795 -53414677 - LTR33 LTR ERVL -298 223 13 587 269 65 15 chr11 95368911 95369112 -53414360 + MIR SINE MIR 42 252 -10 225 65 0 0 chr11 95369211 95369242 -53414230 + (GA)n Simple_repeat Simple_repeat 2 32 0 207 330 143 9 chr11 95369295 95369407 -53414065 + L2 LINE L2 3142 3268 -4 180 304 0 0 chr11 95370535 95370581 -53412891 - L2 LINE L2 -12 3301 3256 21 0 0 0 chr11 95370593 95370614 -53412858 + AT_rich Low_complexity Low_complexity 1 21 0 452 295 24 24 chr11 95370671 95370837 -53412635 + MIR SINE MIR 88 253 -9 222 250 0 83 chr11 95372524 95372584 -53410888 + L2 LINE L2 3250 3304 -9 232 239 46 119 chr11 95373035 95373144 -53410328 - L2 LINE L2 -1 3271 3171 290 305 11 11 chr11 95373243 95373338 -53410134 + MER5A DNA MER1_type 95 189 0 221 237 0 34 chr11 95373338 95373395 -53410077 + MIR3 SINE MIR 153 207 -1 205 333 0 0 chr11 95373657 95373717 -53409755 + L2 LINE L2 3211 3270 -2 393 264 70 8 chr11 95373980 95374109 -53409363 - MIR SINE MIR -13 249 113 350 314 65 38 chr11 95374711 95374896 -53408576 - MIR SINE MIR -1 261 72 230 200 0 0 chr11 95375012 95375057 -53408415 + L1ME LINE L1 5818 5862 -259 373 269 109 23 chr11 95376302 95376421 -53407051 + L2 LINE L2 3033 3140 -132 5962 111 0 0 chr11 95376421 95377418 -53406054 - L1PA13 LINE L1 -1 6162 5156 373 269 109 23 chr11 95377418 95377508 -53405964 + L2 LINE L2 3140 3268 -4 396 0 0 0 chr11 95378156 95378200 -53405272 + (TG)n Simple_repeat Simple_repeat 1 44 0 549 308 28 33 chr11 95378357 95378568 -53404904 + MIR SINE MIR 49 258 -4 4245 146 23 28 chr11 95380054 95380883 -53402589 - L1MC2 LINE L1 -9 6335 5511 530 203 8 24 chr11 95381235 95381358 -53402114 - L1PA16 LINE L1 -16 6150 6030 274 353 38 85 chr11 95381397 95381940 -53401532 + L2 LINE L2 2759 3272 0 31424 109 13 53 chr11 95381970 95388378 -53395094 + L1PA7 LINE L1 12 6148 -6 261 418 42 8 chr11 95388547 95388786 -53394686 + L2 LINE L2 2807 3053 -219 180 0 0 0 chr11 95388978 95388998 -53394474 + (TTG)n Simple_repeat Simple_repeat 2 21 0 189 346 0 26 chr11 95388999 95389077 -53394395 + L2 LINE L2 3237 3312 -1 252 347 99 8 chr11 95389538 95389659 -53393813 + L2 LINE L2 3181 3312 -1 250 344 40 66 chr11 95389784 95389935 -53393537 - MIR SINE MIR -6 256 110 256 406 24 6 chr11 95390461 95390626 -53392846 + L2 LINE L2 3126 3293 -20 24 32 0 0 chr11 95391434 95391465 -53392007 + AT_rich Low_complexity Low_complexity 1 31 0 1717 188 145 10 chr11 95391485 95391884 -53391588 + L1M3 LINE L1 5274 5726 -442 189 341 176 0 chr11 95393435 95393526 -53389946 + MIR3 SINE MIR 85 191 -17 22 35 0 0 chr11 95395522 95395551 -53387921 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr11 95395619 95395641 -53387831 + AT_rich Low_complexity Low_complexity 1 22 0 1834 256 46 38 chr11 95396587 95396864 -53386608 - L1MC4a LINE L1 -55 7753 7480 1815 148 70 22 chr11 95396864 95397222 -53386250 + THE1C LTR MaLR 1 375 0 1834 256 46 38 chr11 95397222 95397733 -53385739 - L1MC4a LINE L1 -328 7480 6956 771 302 25 0 chr11 95397816 95398018 -53385454 - MIR SINE MIR -39 223 17 180 319 0 0 chr11 95399500 95399547 -53383925 - L3 LINE CR1 -17 1560 1514 277 355 46 13 chr11 95400013 95400165 -53383307 + MER5A DNA MER1_type 10 166 -23 247 326 11 11 chr11 95401743 95401838 -53381634 - MIR3 SINE MIR -9 199 105 282 282 69 46 chr11 95402376 95402507 -53380965 - MIR SINE MIR -109 153 20 1824 158 6 22 chr11 95402533 95402850 -53380622 - AluJb SINE Alu 0 312 1 522 294 85 0 chr11 95403237 95403414 -53380058 + MIR SINE MIR 70 261 -1 21 71 0 0 chr11 95404298 95404340 -53379132 + AT_rich Low_complexity Low_complexity 1 42 0 22052 186 25 23 chr11 95405189 95411061 -53372411 + L1PA11 LINE L1 6 7239 -373 2173 132 42 20 chr11 95411061 95411417 -53372055 - THE1B LTR MaLR 0 364 1 22052 186 25 23 chr11 95411417 95411790 -53371682 + L1PA11 LINE L1 7239 7610 -2 263 294 42 56 chr11 95412266 95412409 -53371063 + MIR SINE MIR 71 211 -51 276 391 21 36 chr11 95413077 95413269 -53370203 - MIR3 SINE MIR -1 207 19 267 353 83 13 chr11 95413559 95413715 -53369757 - MIR3 SINE MIR -9 199 33 2352 189 19 23 chr11 95414032 95414561 -53368911 + L1M4c LINE L1 1130 1656 -4728 19402 191 27 12 chr11 95414587 95420525 -53362947 + L1PA13 LINE L1 763 6809 -5 3882 241 98 42 chr11 95420518 95424368 -53359104 + L1PA15 LINE L1 1640 5708 -693 * 269 237 283 14 chr11 95424373 95424486 -53358986 - FRAM SINE Alu -47 119 1 4222 142 12 3 chr11 95424488 95425177 -53358295 + L1PA15 LINE L1 5697 6391 -10 3701 192 17 12 chr11 95425177 95425948 -53357524 + L1MB3 LINE L1 5390 6164 -19 652 245 110 43 chr11 95426005 95426287 -53357185 + MLT1D LTR MaLR 157 457 -48 6595 190 42 46 chr11 95426303 95427860 -53355612 + L1MC3 LINE L1 6226 7777 -8 472 177 150 41 chr11 95428465 95428529 -53354943 + MER33 DNA MER1_type 1 57 -2528 1775 205 59 71 chr11 95428529 95429090 -53354382 - MLT2B3 LTR ERVL 0 554 1 472 177 150 41 chr11 95429090 95429172 -53354300 + MER33 DNA MER1_type 57 163 -161 830 215 88 27 chr11 95429195 95429455 -53354017 - L1MD2 LINE L1 -350 6009 5734 37364 87 9 8 chr11 95429792 95435926 -53347546 - L1PA6 LINE L1 -2 6152 11 314 286 167 77 chr11 95436300 95436534 -53346938 - MIR SINE MIR -6 256 2 316 308 232 9 chr11 95437263 95437474 -53345998 + L2 LINE L2 2848 3105 -167 354 288 23 23 chr11 95437783 95437915 -53345557 + MIR SINE MIR 67 198 -64 27 29 0 0 chr11 95438010 95438044 -53345428 + AT_rich Low_complexity Low_complexity 1 34 0 604 162 99 9 chr11 95438045 95438156 -53345316 - FLAM_C SINE Alu -22 121 1 360 64 0 0 chr11 95438448 95438495 -53344977 + (TA)n Simple_repeat Simple_repeat 2 48 0 27 0 0 0 chr11 95439360 95439387 -53344085 + AT_rich Low_complexity Low_complexity 1 27 0 25 51 0 0 chr11 95439422 95439461 -53344011 + AT_rich Low_complexity Low_complexity 1 39 0 213 39 0 0 chr11 95439523 95439549 -53343923 + (TAA)n Simple_repeat Simple_repeat 3 28 0 2160 133 48 20 chr11 95439552 95439906 -53343566 - THE1B LTR MaLR 0 364 1 572 313 32 20 chr11 95440185 95440431 -53343041 - MIR SINE MIR -12 250 2 354 261 122 0 chr11 95441123 95441238 -53342234 + MIR SINE MIR 117 245 -17 275 290 0 14 chr11 95441307 95441376 -53342096 - MER63A DNA MER1_type 0 210 143 240 330 115 40 chr11 95441751 95441951 -53341521 - MIR SINE MIR -32 230 16 971 299 116 24 chr11 95443771 95444262 -53339210 + L2 LINE L2 2771 3307 -6 369 0 0 0 chr11 95444470 95444511 -53338961 + (TG)n Simple_repeat Simple_repeat 2 42 0 701 324 84 52 chr11 95444700 95445281 -53338191 - L2 LINE L2 -443 2871 2272 225 362 168 13 chr11 95446409 95446558 -53336914 + MIR3 SINE MIR 20 191 -17 226 106 43 0 chr11 95446683 95446730 -53336742 + A-rich Low_complexity Low_complexity 2 50 0 251 146 0 0 chr11 95447148 95447189 -53336283 - L2 LINE L2 -8 3305 3265 2061 136 0 29 chr11 95447191 95447500 -53335972 - AluSx SINE Alu -12 300 1 21 0 0 0 chr11 95447908 95447929 -53335543 + AT_rich Low_complexity Low_complexity 1 21 0 277 379 159 19 chr11 95448119 95448702 -53334770 - L2 LINE L2 -436 2878 2214 187 288 85 0 chr11 95448689 95448748 -53334724 + L2 LINE L2 3193 3256 -57 * 189 74 0 0 chr11 95451149 95451176 -53332296 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1107 200 33 44 chr11 95451181 95451451 -53332021 - AluJo SINE Alu -30 282 16 452 329 69 29 chr11 95451479 95451753 -53331719 + L2 LINE L2 2532 2816 -498 217 362 32 0 chr11 95451821 95451915 -53331557 - L2 LINE L2 -604 2710 2614 284 269 86 11 chr11 95452325 95452418 -53331054 + L3 LINE CR1 1298 1397 -180 247 298 116 25 chr11 95452536 95452657 -53330815 - MIR SINE MIR -61 147 16 433 323 98 6 chr11 95452966 95453130 -53330342 - MIR SINE MIR -82 180 2 226 376 35 0 chr11 95453659 95453744 -53329728 + L2 LINE L2 3185 3272 0 306 0 0 0 chr11 95454236 95454270 -53329202 + (TG)n Simple_repeat Simple_repeat 2 35 0 2171 106 26 0 chr11 95454466 95454768 -53328704 - AluSg SINE Alu 0 310 1 217 333 0 0 chr11 95455664 95455718 -53327754 - L2 LINE L2 -15 3257 3204 225 128 0 0 chr11 95456135 95456182 -53327290 + (A)n Simple_repeat Simple_repeat 1 47 0 203 88 29 0 chr11 95457417 95457451 -53326021 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 385 301 119 21 chr11 95457454 95457597 -53325875 - MIR3 SINE MIR -21 187 31 361 364 39 0 chr11 95457801 95457930 -53325542 + L2 LINE L2 3137 3270 -2 198 328 103 46 chr11 95457994 95458189 -53325283 + MIR SINE MIR 1 206 -56 337 53 193 0 chr11 95458657 95458714 -53324758 - MADE1 DNA Mariner 0 80 13 181 349 61 0 chr11 95459123 95459189 -53324283 + MIR SINE MIR 46 115 -147 878 145 21 47 chr11 95459595 95459780 -53323692 + L1PB4 LINE L1 5719 5900 -256 12486 29 0 0 chr11 95459780 95462031 -53321441 + L1PA3 LINE L1 3901 6152 -3 1405 157 43 0 chr11 95462055 95462310 -53321162 + L1PB4 LINE L1 5890 6155 -1 2267 82 0 0 chr11 95462508 95462824 -53320648 - AluSc SINE Alu 0 316 1 390 321 28 0 chr11 95463344 95463453 -53320019 + MIR SINE MIR 32 143 -65 300 293 20 88 chr11 95463468 95463615 -53319857 - MER5A DNA MER1_type -2 187 51 396 373 73 27 chr11 95464280 95464540 -53318932 + L2 LINE L2 3001 3272 0 505 211 78 33 chr11 95467141 95467321 -53316151 + MER53 DNA DNA 2 189 0 438 307 118 0 chr11 95469695 95469848 -53313624 - MIR3 SINE MIR 0 208 38 1297 296 47 17 chr11 95471388 95472182 -53311290 + L1MEc LINE L1 36 901 -5495 2328 252 51 45 chr11 95472192 95472796 -53310676 + L1MEc LINE L1 2475 3073 -3142 1913 181 45 24 chr11 95472796 95473215 -53310257 - MSTB1 LTR MaLR -2 430 3 2328 252 51 45 chr11 95473215 95473269 -53310203 + L1MEc LINE L1 3073 3125 -3090 2813 16 0 0 chr11 95473269 95473583 -53309889 + AluYb8 SINE Alu 1 314 -4 2261 126 0 0 chr11 95473592 95473902 -53309570 + AluSg SINE Alu 1 310 0 2328 252 51 45 chr11 95473902 95474287 -53309185 + L1MEc LINE L1 3132 3536 -2679 203 133 0 0 chr11 95474287 95474317 -53309155 + (TCTG)n Simple_repeat Simple_repeat 2 31 0 400 361 70 0 chr11 95475031 95475261 -53308211 - MIR SINE MIR -15 247 2 352 374 5 24 chr11 95476243 95476449 -53307023 - L3 LINE CR1 -734 843 642 291 389 36 0 chr11 95476471 95476610 -53306862 + MIR SINE MIR 7 150 -112 1907 188 18 25 chr11 95477024 95477422 -53306050 - MSTD LTR MaLR -1 395 1 1829 103 46 29 chr11 95477450 95477731 -53305741 + AluY SINE Alu 18 303 -8 281 364 36 18 chr11 95477887 95478052 -53305420 + MIR SINE MIR 60 227 -35 309 51 0 0 chr11 95478682 95478721 -53304751 + (A)n Simple_repeat Simple_repeat 1 39 0 354 339 128 0 chr11 95479876 95480056 -53303416 - MIR SINE MIR -53 209 7 525 261 82 5 chr11 95480237 95480552 -53302920 - L1M2 LINE L1 -629 5535 5227 426 287 102 51 chr11 95480593 95480927 -53302545 - L1MEc LINE L1 -4169 2552 2202 557 288 24 40 chr11 95480966 95481279 -53302193 - L1MEc LINE L1 -4471 2109 1772 347 92 104 12 chr11 95481332 95481496 -53301976 + (TA)n Simple_repeat Simple_repeat 1 179 0 567 123 69 7 chr11 95481519 95481805 -53301667 + (TA)n Simple_repeat Simple_repeat 1 303 0 325 321 9 0 chr11 95483414 95483520 -53299952 - MIR SINE MIR -34 228 122 192 277 138 32 chr11 95484845 95484939 -53298533 + MIR SINE MIR 50 153 -109 29 28 0 0 chr11 95484946 95484982 -53298490 + AT_rich Low_complexity Low_complexity 1 36 0 2257 286 79 38 chr11 95485110 95486255 -53297217 - L2 LINE L2 0 3313 2118 21 0 0 0 chr11 95486334 95486355 -53297117 + AT_rich Low_complexity Low_complexity 1 21 0 1635 98 126 20 chr11 95486707 95486997 -53296475 + AluY SINE Alu 1 317 0 497 345 0 12 chr11 95487172 95487343 -53296129 - MIR SINE MIR -86 176 8 225 254 17 0 chr11 95487875 95487934 -53295538 + CT-rich Low_complexity Low_complexity 3 62 0 307 241 56 0 chr11 95490940 95491048 -53292424 + L1M4 LINE L1 1016 1129 -5413 * 4546 166 42 28 chr11 95491030 95492384 -53291088 + L1M2 LINE L1 4389 5768 -523 21 0 0 0 chr11 95494651 95494672 -53288800 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr11 95495383 95495407 -53288065 + AT_rich Low_complexity Low_complexity 1 24 0 303 217 0 0 chr11 95495726 95495786 -53287686 - MLT1E1 LTR MaLR -3 651 592 2094 97 0 14 chr11 95495786 95496074 -53287398 + AluY SINE Alu 1 284 -27 237 280 27 53 chr11 95496232 95496307 -53287165 + MER58 DNA MER1_type 3 75 -311 924 114 0 0 chr11 95496315 95496447 -53287025 + MER58 DNA MER1_type 2287 2418 -2 24 32 0 0 chr11 95497174 95497205 -53286267 + AT_rich Low_complexity Low_complexity 1 31 0 198 288 85 0 chr11 95502759 95502818 -53280654 - L2 LINE L2 -22 3250 3187 1729 136 0 101 chr11 95502880 95503225 -53280247 - AluSq SINE Alu -3 310 1 441 36 0 0 chr11 95503240 95503295 -53280177 + (TG)n Simple_repeat Simple_repeat 2 56 0 22 0 0 0 chr11 95503716 95503738 -53279734 + AT_rich Low_complexity Low_complexity 1 22 0 577 170 0 54 chr11 95503740 95503852 -53279620 - FLAM_C SINE Alu -25 118 13 978 153 90 50 chr11 95503852 95504074 -53279398 + MER41B LTR ERV1 12 242 -393 315 0 0 0 chr11 95505643 95505678 -53277794 + (A)n Simple_repeat Simple_repeat 1 35 0 37 52 0 0 chr11 95507112 95507170 -53276302 + AT_rich Low_complexity Low_complexity 1 58 0 11996 27 1 1 chr11 95508358 95510098 -53273374 - L1P1 LINE L1 -516 5639 3901 852 143 21 42 chr11 95510094 95510283 -53273189 - L1PB4 LINE L1 -253 5903 5719 * 396 0 0 0 chr11 95513489 95513533 -53269939 + (GA)n Simple_repeat Simple_repeat 2 45 0 26 0 0 0 chr11 95519306 95519332 -53264140 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr11 95519400 95519423 -53264049 + AT_rich Low_complexity Low_complexity 1 23 0 180 135 0 0 chr11 95521981 95522018 -53261454 + (TATG)n Simple_repeat Simple_repeat 3 39 0 222 270 0 22 chr11 95522299 95522388 -53261084 + A-rich Low_complexity Low_complexity 5 91 0 225 83 0 0 chr11 95522391 95522427 -53261045 + (A)n Simple_repeat Simple_repeat 1 36 0 201 39 0 0 chr11 95522719 95522745 -53260727 + (A)n Simple_repeat Simple_repeat 1 26 0 12133 125 9 27 chr11 95524018 95526097 -53257375 - L1P LINE L1 -4024 2122 82 773 295 154 34 chr11 95526274 95527090 -53256382 - HAL1 LINE L1 -1493 1014 101 2009 165 3 29 chr11 95527394 95527740 -53255732 - MER1B DNA MER1_type 0 337 1 42 20 0 0 chr11 95529387 95529436 -53254036 + AT_rich Low_complexity Low_complexity 1 49 0 37 62 0 0 chr11 95530446 95530511 -53252961 + AT_rich Low_complexity Low_complexity 1 65 0 24 0 0 0 chr11 95531247 95531271 -53252201 + AT_rich Low_complexity Low_complexity 1 24 0 738 106 33 33 chr11 95531840 95531991 -53251481 + L1MA5A LINE L1 6147 6297 0 484 292 84 20 chr11 95532016 95532218 -53251254 - MIR SINE MIR 0 262 48 185 305 105 58 chr11 95532314 95532504 -53250968 - L2 LINE L2 -1297 2017 1819 22 0 0 0 chr11 95533399 95533421 -53250051 + AT_rich Low_complexity Low_complexity 1 22 0 689 200 46 26 chr11 95533643 95533975 -53249497 + L1MA9 LINE L1 3410 3750 -3815 4481 143 46 4 chr11 95533975 95534809 -53248663 + L1MA3 LINE L1 5409 6277 -28 198 247 0 0 chr11 95534822 95534899 -53248573 + (TA)n Simple_repeat Simple_repeat 1 77 0 4052 194 22 29 chr11 95534927 95535927 -53247545 + L1MA9 LINE L1 6701 7693 -38 23 33 0 0 chr11 95536162 95536192 -53247280 + AT_rich Low_complexity Low_complexity 1 30 0 1806 165 10 10 chr11 95536614 95536911 -53246561 + AluSx SINE Alu 1 297 -15 386 281 66 16 chr11 95537745 95537866 -53245606 + L2 LINE L2 3187 3313 0 296 345 50 34 chr11 95539178 95539297 -53244175 + MIR SINE MIR 17 137 -71 282 193 0 0 chr11 95539430 95539487 -53243985 + (TATG)n Simple_repeat Simple_repeat 3 59 0 360 0 0 0 chr11 95539892 95539932 -53243540 + (CA)n Simple_repeat Simple_repeat 2 41 0 22 80 0 0 chr11 95540232 95540282 -53243190 + AT_rich Low_complexity Low_complexity 1 50 0 1253 229 21 21 chr11 95541120 95541408 -53242064 + AluJo SINE Alu 2 289 -23 875 133 101 0 chr11 95541539 95541727 -53241745 + THE1B LTR MaLR 158 364 0 40 59 0 0 chr11 95541826 95541894 -53241578 + AT_rich Low_complexity Low_complexity 1 68 0 342 0 0 0 chr11 95542218 95542256 -53241216 + (T)n Simple_repeat Simple_repeat 1 38 0 999 175 6 0 chr11 95542464 95542647 -53240825 + LTR9 LTR ERV1 1 184 -428 1495 131 5 5 chr11 95542815 95543036 -53240436 - AluY SINE Alu -11 300 80 31 0 0 0 chr11 95543036 95543067 -53240405 + AT_rich Low_complexity Low_complexity 1 31 0 40169 50 22 4 chr11 95543067 95549114 -53234358 - L1PA5 LINE L1 0 6154 1 576 116 35 0 chr11 95549118 95549204 -53234268 - AluY SINE Alu -229 89 1 1258 237 23 67 chr11 95549204 95549639 -53233833 + L1 LINE L1 4955 5370 -776 * 2559 184 72 33 chr11 95549637 95550220 -53233252 - L1MD1 LINE L1 -114 6128 5523 488 270 29 15 chr11 95550340 95550477 -53232995 - Charlie1a DNA MER1_type -1316 139 1 23 0 0 0 chr11 95550536 95550559 -53232913 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr11 95551463 95551498 -53231974 + AT_rich Low_complexity Low_complexity 1 35 0 2721 149 50 0 chr11 95551563 95552027 -53231445 - Tigger3(Golem) DNA MER2_type -1 3028 2542 1041 197 11 36 chr11 95552128 95552407 -53231065 - L1 LINE L1 -1597 4549 4278 1287 211 22 7 chr11 95552425 95552700 -53230772 + AluJo SINE Alu 25 303 -9 416 243 10 0 chr11 95552723 95552826 -53230646 - L1 LINE L1 -1853 4293 4190 1471 218 16 0 chr11 95552829 95553136 -53230336 + L1 LINE L1 4656 4967 -1179 1102 234 40 15 chr11 95553277 95553606 -53229866 + L1MD1 LINE L1 4066 4402 -1744 3401 204 84 46 chr11 95553636 95553694 -53229778 + L1MD1 LINE L1 4616 4670 -1572 7351 38 5 2 chr11 95553694 95555020 -53228452 + L1PA4 LINE L1 4830 6153 -2 3401 204 84 46 chr11 95555020 95555806 -53227666 + L1MD1 LINE L1 4670 5425 -817 189 0 0 0 chr11 95555806 95555827 -53227645 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 3401 204 84 46 chr11 95555827 95556553 -53226919 + L1MD1 LINE L1 5425 6241 -1 230 231 0 0 chr11 95557484 95557536 -53225936 + L2 LINE L2 2704 2755 -559 406 304 0 0 chr11 95557557 95557682 -53225790 + L2 LINE L2 2946 3070 -243 217 326 10 31 chr11 95557761 95557859 -53225613 + L2 LINE L2 3217 3312 -1 222 303 156 28 chr11 95557886 95557995 -53225477 - L2 LINE L2 -9 3263 3141 1045 311 22 24 chr11 95558454 95558869 -53224603 - L2 LINE L2 -2001 1313 900 207 280 54 86 chr11 95559266 95559359 -53224113 + L3 LINE CR1 1142 1231 -346 198 216 39 0 chr11 95559453 95559504 -53223968 + MIR SINE MIR 78 130 -132 233 262 279 17 chr11 95560300 95560472 -53223000 + MIR SINE MIR 31 247 -15 261 296 91 15 chr11 95560581 95560713 -53222759 - L2 LINE L2 -3 3310 3169 1019 310 108 28 chr11 95560822 95561358 -53222114 - L2 LINE L2 -741 2573 1995 332 339 60 30 chr11 95561523 95561553 -53221919 - MIR SINE MIR -77 185 157 920 230 25 21 chr11 95561553 95561788 -53221684 - MER46A DNA MER2_type 0 236 1 332 339 60 30 chr11 95561788 95561925 -53221547 - MIR SINE MIR -105 157 13 1779 316 76 25 chr11 95562424 95563598 -53219874 - L2 LINE L2 -9 3304 2073 245 235 174 0 chr11 95563733 95563848 -53219624 + L1ME4a LINE L1 5946 6080 -41 702 261 49 0 chr11 95564084 95564268 -53219204 + MIR SINE MIR 6 198 -64 40 0 0 0 chr11 95564582 95564622 -53218850 + AT_rich Low_complexity Low_complexity 1 40 0 23 54 0 0 chr11 95564634 95564671 -53218801 + AT_rich Low_complexity Low_complexity 1 37 0 456 333 43 19 chr11 95564709 95564919 -53218553 - MIR SINE MIR 0 262 48 324 237 44 35 chr11 95564932 95565046 -53218426 - L1MC/D LINE L1 -1993 5815 5701 513 308 72 18 chr11 95566743 95566964 -53216508 - MIR SINE MIR -2 260 28 1018 218 14 9 chr11 95567165 95567381 -53216091 - MER20 DNA MER1_type -1 218 2 229 164 98 16 chr11 95567615 95567676 -53215796 + MIR SINE MIR 131 196 -66 441 291 98 42 chr11 95567744 95568102 -53215370 + L2 LINE L2 2600 2977 -337 2260 54 7 0 chr11 95568138 95568456 -53215016 - AluY SINE Alu 0 320 1 237 348 121 23 chr11 95568905 95569161 -53214311 - L2 LINE L2 -438 2876 2596 2783 3 0 16 chr11 95570974 95571289 -53212183 + AluY SINE Alu 1 310 -1 272 204 70 13 chr11 95571407 95571564 -53211908 + (TTGTG)n Simple_repeat Simple_repeat 2 167 0 1214 276 71 47 chr11 95572644 95573226 -53210246 - L2 LINE L2 -18 3295 2701 35 54 0 0 chr11 95573926 95573982 -53209490 + AT_rich Low_complexity Low_complexity 1 56 0 1787 187 0 0 chr11 95574106 95574405 -53209067 + AluSx SINE Alu 1 299 -13 22 35 0 0 chr11 95574491 95574520 -53208952 + AT_rich Low_complexity Low_complexity 1 29 0 267 356 0 0 chr11 95574919 95575054 -53208418 + A-rich Low_complexity Low_complexity 1 135 0 48 0 0 0 chr11 95575221 95575269 -53208203 + AT_rich Low_complexity Low_complexity 1 48 0 6119 235 78 24 chr11 95575277 95575664 -53207808 + L1MA4A LINE L1 3 367 -6482 1853 128 68 31 chr11 95575664 95576015 -53207457 - THE1B LTR MaLR 0 364 1 6119 235 78 24 chr11 95576015 95577115 -53206357 + L1MA4A LINE L1 367 1571 -5278 5324 169 32 21 chr11 95577118 95579192 -53204280 + L1MA4A LINE L1 4909 7001 -4 199 175 18 53 chr11 95579996 95580053 -53203419 - L2 LINE L2 -100 3213 3159 765 226 37 6 chr11 95581096 95581260 -53202212 - MER58A DNA MER1_type -9 215 47 213 211 0 0 chr11 95581343 95581395 -53202077 + (TATG)n Simple_repeat Simple_repeat 1 52 0 1649 175 26 23 chr11 95581449 95581758 -53201714 + AluSx SINE Alu 1 310 -2 818 266 9 17 chr11 95582200 95582437 -53201035 + MIR SINE MIR 25 261 -1 2609 39 0 3 chr11 95582734 95583044 -53200428 + AluY SINE Alu 1 309 -2 300 262 36 0 chr11 95583052 95583136 -53200336 + MIR SINE MIR 105 191 -71 384 22 0 0 chr11 95583803 95583848 -53199624 + (CA)n Simple_repeat Simple_repeat 2 46 0 21 57 0 0 chr11 95584146 95584181 -53199291 + AT_rich Low_complexity Low_complexity 1 35 0 301 318 149 5 chr11 95584266 95584467 -53199005 + L1MC/D LINE L1 5260 5489 -2319 763 318 117 31 chr11 95584579 95584617 -53198855 + L2 LINE L2 1705 1738 -1576 14545 159 31 12 chr11 95584617 95587285 -53196187 - Tigger2 DNA MER2_type 0 2718 1 763 318 117 31 chr11 95587285 95587922 -53195550 + L2 LINE L2 1738 2438 -876 9148 184 45 63 chr11 95587981 95589289 -53194183 + Tigger1 DNA MER2_type 3 1333 -1085 297 0 0 0 chr11 95589289 95589322 -53194150 + (CA)n Simple_repeat Simple_repeat 2 34 0 9148 184 45 63 chr11 95589322 95590359 -53193113 + Tigger1 DNA MER2_type 1333 2303 -115 2382 81 0 0 chr11 95590359 95590666 -53192806 - AluY SINE Alu 0 311 5 9148 184 45 63 chr11 95590666 95590780 -53192692 + Tigger1 DNA MER2_type 2303 2418 0 37 52 0 0 chr11 95591792 95591850 -53191622 + AT_rich Low_complexity Low_complexity 1 58 0 201 243 57 57 chr11 95591963 95592033 -53191439 + MIR3 SINE MIR 92 161 -47 319 217 58 0 chr11 95592301 95592370 -53191102 + MIR SINE MIR 178 250 -12 277 316 191 23 chr11 95592416 95592631 -53190841 + L3 LINE CR1 1168 1418 -159 1265 247 111 47 chr11 95593645 95594095 -53189377 + MLT2B1 LTR ERVL 1 479 -41 295 291 13 0 chr11 95594095 95594174 -53189298 + (CATA)n Simple_repeat Simple_repeat 1 80 0 256 153 34 0 chr11 95594175 95594234 -53189238 + MLT2B1 LTR ERVL 460 520 0 34 65 0 0 chr11 95595544 95595606 -53187866 + AT_rich Low_complexity Low_complexity 1 62 0 331 267 91 40 chr11 95595827 95596003 -53187469 - MIR SINE MIR -16 246 62 234 315 67 0 chr11 95596445 95596534 -53186938 - MIR SINE MIR -56 206 112 22 0 0 0 chr11 95597299 95597321 -53186151 + AT_rich Low_complexity Low_complexity 1 22 0 426 152 114 0 chr11 95597552 95597631 -53185841 + L1MC1 LINE L1 6245 6332 -1 306 356 19 10 chr11 95598545 95598649 -53184823 + HAL1 LINE L1 2398 2502 -5 875 168 147 72 chr11 95598781 95598996 -53184476 + L1MA8 LINE L1 5533 5777 -514 180 0 0 0 chr11 95598996 95599016 -53184456 + (TA)n Simple_repeat Simple_repeat 1 20 0 875 168 147 72 chr11 95599016 95599093 -53184379 + L1MA8 LINE L1 5777 5847 -444 708 214 11 22 chr11 95599545 95599716 -53183756 + L1PA16 LINE L1 5971 6141 -25 201 39 0 0 chr11 95599716 95599742 -53183730 + (TTAAA)n Simple_repeat Simple_repeat 3 28 0 3635 151 9 27 chr11 95601178 95601816 -53181656 - Tigger3b DNA MER2_type -603 628 2 451 260 24 97 chr11 95601926 95602224 -53181248 - L1MC/D LINE L1 -450 5671 5462 23 33 0 0 chr11 95602251 95602281 -53181191 + AT_rich Low_complexity Low_complexity 1 30 0 473 353 212 13 chr11 95603692 95604244 -53179228 - L2 LINE L2 -952 2362 1701 206 267 0 0 chr11 95604256 95604316 -53179156 + MIR SINE MIR 187 246 -16 354 287 144 22 chr11 95604416 95604597 -53178875 - MIR SINE MIR -40 222 20 914 167 158 0 chr11 95605855 95606077 -53177395 + Charlie5 DNA MER1_type 2366 2622 0 274 360 103 30 chr11 95606165 95606368 -53177104 + L2 LINE L2 2807 3024 -248 1727 143 0 59 chr11 95606413 95606720 -53176752 - AluJb SINE Alu -23 289 1 462 150 157 20 chr11 95607310 95607457 -53176015 + Charlie1 DNA MER1_type 2514 2680 -81 1151 71 13 0 chr11 95607587 95607742 -53175730 - L1PA10 LINE L1 -2 6166 6010 5072 99 11 3 chr11 95607742 95608527 -53174945 + L1PA10 LINE L1 5181 5970 -198 658 202 93 39 chr11 95608527 95608784 -53174688 + MER63 DNA MER1_type 792 1062 0 4170 103 16 0 chr11 95609333 95609945 -53173527 - L1PA7 LINE L1 -1718 4428 3807 * 6843 64 12 0 chr11 95609932 95611499 -53171973 + L1PA7 LINE L1 4426 6151 -3 3823 106 2 3 chr11 95611663 95612229 -53171243 - L1P LINE L1 -1012 5134 4570 225 345 0 48 chr11 95612271 95612355 -53171117 - L2 LINE L2 -671 2643 2564 1620 205 37 13 chr11 95612461 95612842 -53170630 + MLT1B LTR MaLR 1 390 0 349 270 24 56 chr11 95612928 95613054 -53170418 + MIR SINE MIR 10 131 -131 587 254 124 10 chr11 95613237 95613430 -53170042 + MIR SINE MIR 48 262 0 37 62 0 0 chr11 95614467 95614532 -53168940 + AT_rich Low_complexity Low_complexity 1 65 0 24 0 0 0 chr11 95615268 95615292 -53168180 + AT_rich Low_complexity Low_complexity 1 24 0 187 310 157 35 chr11 95615503 95615764 -53167708 - L2 LINE L2 -834 2480 2188 815 123 13 32 chr11 95615860 95616014 -53167458 + L1MA5A LINE L1 6147 6297 0 494 292 84 20 chr11 95616039 95616241 -53167231 - MIR SINE MIR 0 262 48 192 300 105 58 chr11 95616337 95616527 -53166945 - L2 LINE L2 -1297 2017 1819 22 0 0 0 chr11 95617418 95617440 -53166032 + AT_rich Low_complexity Low_complexity 1 22 0 368 255 132 9 chr11 95617559 95617665 -53165807 + L1MA6 LINE L1 199 317 -7248 * 3695 242 55 25 chr11 95617662 95619149 -53164323 + L1MA6 LINE L1 3410 5053 -2512 2578 174 10 12 chr11 95619153 95619658 -53163814 + L1MA6 LINE L1 6187 6690 -875 11963 163 30 5 chr11 95619658 95621772 -53161700 - Tigger1 DNA MER2_type -1 2417 252 2194 152 62 5 chr11 95621776 95622198 -53161274 + L1MA6 LINE L1 7185 7630 -89 707 227 62 0 chr11 95622194 95622388 -53161084 + L1ME1 LINE L1 5369 5574 -785 * 1502 182 6 52 chr11 95622470 95622794 -53160678 + AluJb SINE Alu 3 311 -1 1206 53 0 0 chr11 95622804 95622956 -53160516 + L1PA3 LINE L1 6004 6155 0 372 221 60 73 chr11 95622972 95623151 -53160321 + L1ME1 LINE L1 5595 5775 -476 1097 270 60 13 chr11 95623634 95624015 -53159457 + L1ME1 LINE L1 5750 6148 -18 408 219 55 6 chr11 95624200 95624342 -53159130 + L1M4 LINE L1 5209 5357 -830 33 0 0 0 chr11 95624361 95624394 -53159078 + AT_rich Low_complexity Low_complexity 1 33 0 440 281 111 12 chr11 95625730 95625901 -53157571 + MIR SINE MIR 20 207 -55 31 0 0 0 chr11 95626079 95626110 -53157362 + AT_rich Low_complexity Low_complexity 1 31 0 1659 172 17 7 chr11 95626898 95627221 -53156251 + AluSx SINE Alu 2 312 0 2142 82 0 34 chr11 95627223 95627515 -53155957 + AluY SINE Alu 17 298 -13 26 0 0 0 chr11 95627572 95627598 -53155874 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr11 95627666 95627689 -53155783 + AT_rich Low_complexity Low_complexity 1 23 0 2386 116 19 14 chr11 95627700 95628062 -53155410 + THE1B LTR MaLR 1 364 0 9066 134 77 5 chr11 95628062 95629535 -53153937 + THE1B-int LTR MaLR 1 1580 0 2407 127 17 11 chr11 95629535 95629897 -53153575 + THE1B LTR MaLR 1 364 0 40 59 0 0 chr11 95629996 95630064 -53153408 + AT_rich Low_complexity Low_complexity 1 68 0 243 0 0 0 chr11 95630388 95630415 -53153057 + (T)n Simple_repeat Simple_repeat 1 27 0 3951 145 10 2 chr11 95630623 95631230 -53152242 + LTR9 LTR ERV1 1 612 0 26207 145 108 109 chr11 95631235 95638179 -53145293 + HUERS-P3b LTR ERV1 5 6946 -472 812 175 18 6 chr11 95638184 95638355 -53145117 + LTR9-int LTR ERV1 2388 2560 -2455 438 181 105 0 chr11 95638361 95638466 -53145006 + LTR9-int LTR ERV1 4203 4318 -562 1374 126 5 0 chr11 95638625 95638823 -53144649 + LTR9-int LTR ERV1 8720 8918 -1 4062 144 3 0 chr11 95638823 95639433 -53144039 + LTR9 LTR ERV1 1 612 0 1246 236 22 42 chr11 95639622 95639978 -53143494 + MLT1A1 LTR MaLR 15 363 -2 199 311 95 0 chr11 95640329 95640403 -53143069 + MIR SINE MIR 72 152 -110 301 239 30 0 chr11 95640779 95640846 -53142626 - L2 LINE L2 -8 3305 3237 229 349 19 28 chr11 95641082 95641188 -53142284 - MIR SINE MIR -145 117 13 1005 211 140 99 chr11 95641396 95641890 -53141582 - MLT2B2 LTR ERVL -1 514 1 770 265 39 10 chr11 95642486 95642690 -53140782 + MER20 DNA MER1_type 2 211 -8 1513 179 50 106 chr11 95642891 95643371 -53140101 - MLT1C LTR MaLR -7 460 8 217 294 59 12 chr11 95643382 95643467 -53140005 + MIR SINE MIR 100 188 -74 189 74 0 0 chr11 95643581 95643608 -53139864 + (CA)n Simple_repeat Simple_repeat 2 28 0 789 262 35 0 chr11 95645162 95645364 -53138108 + MER63A DNA MER1_type 2 210 0 195 374 0 12 chr11 95645585 95645668 -53137804 - L2 LINE L2 -4 3268 3187 200 210 168 20 chr11 95646107 95646185 -53137287 + MIR SINE MIR 82 163 -45 332 354 101 5 chr11 95646193 95646402 -53137070 - MIR SINE MIR 0 262 34 206 118 0 0 chr11 95647094 95647128 -53136344 + (T)n Simple_repeat Simple_repeat 1 34 0 662 325 48 12 chr11 95647160 95647412 -53136060 + MIR SINE MIR 2 262 0 615 265 75 83 chr11 95647452 95647620 -53135852 - L2 LINE L2 0 3313 3145 2133 116 10 13 chr11 95647620 95647931 -53135541 + AluSg SINE Alu 1 310 0 615 265 75 83 chr11 95647931 95648235 -53135237 - L2 LINE L2 -168 3145 2821 2993 193 8 5 chr11 95648235 95648832 -53134640 + L1PB4 LINE L1 5550 6148 -8 615 265 75 83 chr11 95648832 95648924 -53134548 - L2 LINE L2 -492 2821 2730 21 0 0 0 chr11 95649275 95649296 -53134176 + AT_rich Low_complexity Low_complexity 1 21 0 1962 138 7 0 chr11 95650246 95650571 -53132901 - AluSx SINE Alu 0 329 3 191 253 207 23 chr11 95650683 95650770 -53132702 - L2 LINE L2 -9 3304 3202 297 273 65 43 chr11 95651649 95651788 -53131684 + MIR SINE MIR 75 216 -46 377 308 74 21 chr11 95651948 95652177 -53131295 + MIR SINE MIR 3 260 -2 372 323 123 0 chr11 95652584 95652714 -53130758 + MIR SINE MIR 2 147 -115 22 80 0 0 chr11 95652731 95652781 -53130691 + AT_rich Low_complexity Low_complexity 1 50 0 254 317 67 34 chr11 95654461 95654477 -53128995 + L2 LINE L2 3078 3092 -221 243 0 0 0 chr11 95654477 95654504 -53128968 + (CA)n Simple_repeat Simple_repeat 2 28 0 254 317 67 34 chr11 95654504 95654695 -53128777 + L2 LINE L2 3092 3292 -21 2467 204 44 41 chr11 95654835 95655468 -53128004 - L1MB4 LINE L1 0 6180 5546 200 237 0 53 chr11 95656317 95656393 -53127079 + (TAAA)n Simple_repeat Simple_repeat 2 73 0 468 314 29 0 chr11 95656503 95656643 -53126829 + MIR3 SINE MIR 17 160 -48 203 333 27 0 chr11 95657566 95657641 -53125831 - L3 LINE CR1 -17 1560 1484 543 218 9 0 chr11 95657895 95658005 -53125467 + MER45A DNA AcHobo 68 178 0 397 255 10 10 chr11 95658090 95658192 -53125280 - L3 LINE CR1 -458 1119 1018 439 289 82 91 chr11 95658222 95658519 -53124953 + LTR33 LTR ERVL 23 282 -241 1874 160 0 0 chr11 95658519 95658806 -53124666 - AluSx SINE Alu -13 299 13 439 289 82 91 chr11 95658806 95658903 -53124569 + LTR33 LTR ERVL 282 378 -145 237 301 48 62 chr11 95659210 95659356 -53124116 - L2 LINE L2 -4 3309 3166 * 489 276 115 6 chr11 95659354 95659528 -53123944 - L2 LINE L2 -566 2748 2556 200 182 0 0 chr11 95660116 95660149 -53123323 + GA-rich Low_complexity Low_complexity 1 33 0 30 45 0 0 chr11 95660513 95660557 -53122915 + AT_rich Low_complexity Low_complexity 1 44 0 11284 185 31 29 chr11 95661025 95663245 -53120227 + L1MA3 LINE L1 16 2229 -5336 1117 23 0 0 chr11 95663245 95663376 -53120096 + L1PA3 LINE L1 6025 6155 0 11284 185 31 29 chr11 95663376 95665657 -53117815 + L1MA3 LINE L1 2229 5203 -2362 694 65 43 0 chr11 95665657 95665750 -53117722 - L1PA8 LINE L1 -10 6162 6066 7017 171 48 2 chr11 95666073 95666273 -53117199 + L1MA3 LINE L1 5194 5383 -2341 2140 97 0 24 chr11 95666273 95666571 -53116901 + AluY SINE Alu 1 291 -20 7017 171 48 2 chr11 95666571 95668758 -53114714 + L1MA3 LINE L1 5383 7696 -28 198 247 0 0 chr11 95668771 95668848 -53114624 + (TA)n Simple_repeat Simple_repeat 2 78 0 4481 190 23 30 chr11 95668876 95669876 -53113596 + L1MA9 LINE L1 5282 6274 -38 23 33 0 0 chr11 95670111 95670141 -53113331 + AT_rich Low_complexity Low_complexity 1 30 0 1751 165 10 10 chr11 95670558 95670855 -53112617 + AluSx SINE Alu 1 297 -15 384 281 66 16 chr11 95671689 95671810 -53111662 + L2 LINE L2 3187 3313 0 21 36 0 0 chr11 95671836 95671864 -53111608 + AT_rich Low_complexity Low_complexity 1 28 0 295 345 50 34 chr11 95673123 95673242 -53110230 + MIR SINE MIR 17 137 -71 333 68 0 0 chr11 95673396 95673440 -53110032 + (TA)n Simple_repeat Simple_repeat 1 44 0 342 0 0 0 chr11 95673836 95673874 -53109598 + (CA)n Simple_repeat Simple_repeat 2 39 0 22 80 0 0 chr11 95674174 95674224 -53109248 + AT_rich Low_complexity Low_complexity 1 50 0 1229 228 21 21 chr11 95675062 95675343 -53108129 + AluJo SINE Alu 2 282 -30 1950 98 0 92 chr11 95675454 95675781 -53107691 - AluSq SINE Alu -16 297 1 272 271 98 34 chr11 95677167 95677403 -53106069 + L1ME LINE L1 5629 5879 -242 192 302 0 0 chr11 95677404 95677457 -53106015 + MIR SINE MIR 209 261 -1 23 0 0 0 chr11 95677488 95677511 -53105961 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr11 95678116 95678136 -53105336 + (T)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr11 95678218 95678239 -53105233 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr11 95679577 95679607 -53103865 + AT_rich Low_complexity Low_complexity 1 30 0 32 0 0 0 chr11 95679693 95679725 -53103747 + AT_rich Low_complexity Low_complexity 1 32 0 370 314 30 72 chr11 95679906 95680142 -53103330 - MIR SINE MIR -16 246 21 24 0 0 0 chr11 95680290 95680314 -53103158 + AT_rich Low_complexity Low_complexity 1 24 0 331 341 114 5 chr11 95681047 95681251 -53102221 + MIR SINE MIR 39 262 0 1045 139 55 38 chr11 95682902 95683139 -53100333 + L1MA9 LINE L1 6067 6307 -5 427 339 102 5 chr11 95683392 95683607 -53099865 - MIR SINE MIR -15 247 8 252 86 0 0 chr11 95685296 95685331 -53098141 + (T)n Simple_repeat Simple_repeat 1 35 0 1063 266 66 101 chr11 95685393 95686336 -53097136 + L1MC4a LINE L1 6115 7024 -784 828 166 0 17 chr11 95686336 95686517 -53096955 + GA-rich Low_complexity Low_complexity 3 180 0 402 314 156 43 chr11 95686622 95686969 -53096503 + L1MC4 LINE L1 7288 7673 -369 487 279 157 22 chr11 95687020 95687332 -53096140 + L1MC4 LINE L1 7689 8042 0 205 275 53 92 chr11 95688826 95688957 -53094515 + MIR SINE MIR 103 228 -34 896 214 5 31 chr11 95689316 95689540 -53093932 - L1MA9 LINE L1 -38 6274 6057 5414 224 53 4 chr11 95689660 95690044 -53093428 + L1PA14 LINE L1 4008 4372 -1789 327 49 0 0 chr11 95690044 95690085 -53093387 + (CA)n Simple_repeat Simple_repeat 2 42 0 5414 224 53 4 chr11 95690085 95691612 -53091860 + L1PA14 LINE L1 4372 6011 -150 21 0 0 0 chr11 95692775 95692796 -53090676 + AT_rich Low_complexity Low_complexity 1 21 0 232 373 97 8 chr11 95694269 95694403 -53089069 + L2 LINE L2 3122 3267 -5 1904 126 0 30 chr11 95694798 95695099 -53088373 - AluY SINE Alu -19 292 1 324 0 0 0 chr11 95695275 95695311 -53088161 + (TG)n Simple_repeat Simple_repeat 2 37 0 189 74 0 0 chr11 95696006 95696033 -53087439 + (TG)n Simple_repeat Simple_repeat 1 27 0 361 252 133 33 chr11 95696578 95696729 -53086743 + MIR SINE MIR 95 260 -2 183 100 0 0 chr11 95697040 95697070 -53086402 + (CA)n Simple_repeat Simple_repeat 1 30 0 333 381 70 32 chr11 95697114 95697429 -53086043 + L2 LINE L2 2939 3265 -7 23 33 0 0 chr11 95697843 95697873 -53085599 + AT_rich Low_complexity Low_complexity 1 30 0 1037 149 88 10 chr11 95699456 95699650 -53083822 + MER3 DNA MER1_type 1 209 0 381 325 79 16 chr11 95701297 95701423 -53082049 - L2 LINE L2 0 3272 3139 2262 70 7 0 chr11 95701455 95701754 -53081718 + AluY SINE Alu 4 304 -7 419 284 19 52 chr11 95701800 95701955 -53081517 + MIR SINE MIR 112 261 -1 271 330 136 42 chr11 95702017 95702253 -53081219 - L2 LINE L2 -189 3083 2826 32 67 0 0 chr11 95702698 95702758 -53080714 + AT_rich Low_complexity Low_complexity 1 60 0 296 250 113 12 chr11 95702837 95702997 -53080475 - MER114 LTR ERV -185 463 288 28 0 0 0 chr11 95703160 95703188 -53080284 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr11 95703286 95703323 -53080149 + AT_rich Low_complexity Low_complexity 1 37 0 571 263 80 5 chr11 95703329 95703553 -53079919 - MER114 LTR ERV -349 299 59 1305 239 65 72 chr11 95703578 95704089 -53079383 - Charlie1b DNA MER1_type -1 522 16 33 80 0 0 chr11 95704347 95704422 -53079050 + AT_rich Low_complexity Low_complexity 1 75 0 842 318 32 4 chr11 95704873 95705209 -53078263 - L2 LINE L2 -241 3072 2715 363 245 59 29 chr11 95705210 95705312 -53078160 - MIR SINE MIR -3 259 155 396 267 52 0 chr11 95705454 95705570 -53077902 - L2 LINE L2 -586 2728 2607 24 0 0 0 chr11 95705803 95705827 -53077645 + AT_rich Low_complexity Low_complexity 1 24 0 297 304 49 10 chr11 95705851 95705953 -53077519 - MIR SINE MIR -108 154 49 350 300 92 40 chr11 95706850 95707077 -53076395 - MIR SINE MIR 0 262 24 302 379 11 0 chr11 95707119 95707296 -53076176 + (TCCA)n Simple_repeat Simple_repeat 2 180 0 422 341 0 0 chr11 95707306 95707485 -53075987 + (TTCA)n Simple_repeat Simple_repeat 2 180 0 2045 114 0 7 chr11 95707734 95708044 -53075428 + AluSc SINE Alu 3 310 0 781 296 111 32 chr11 95708180 95708612 -53074860 + MLT1J LTR MaLR 1 466 -45 254 248 40 48 chr11 95709389 95709514 -53073958 + L1MCc LINE L1 83 206 -6217 423 315 84 5 chr11 95709518 95709721 -53073751 + L1MCc LINE L1 1842 2060 -4881 290 207 15 85 chr11 95709755 95709857 -53073615 + L1MCc LINE L1 2040 2567 -4375 2332 253 90 33 chr11 95709888 95710073 -53073399 + L1MCc LINE L1 2888 3061 -3880 1369 188 39 41 chr11 95710073 95710435 -53073037 - MLT1A1 LTR MaLR 0 365 5 2332 253 90 33 chr11 95710435 95711514 -53071958 + L1MCc LINE L1 3061 4188 -2753 460 262 80 48 chr11 95711754 95711941 -53071531 + MLT1J LTR MaLR 1 193 -318 249 277 24 0 chr11 95711985 95712068 -53071404 - LTR33A LTR ERVL -30 493 409 237 130 0 0 chr11 95712132 95712178 -53071294 + LTR66 LTR ERVL 394 439 -171 1095 256 120 17 chr11 95712262 95712621 -53070851 - MSTD LTR MaLR 0 396 1 818 174 66 85 chr11 95713171 95713310 -53070162 + L1MB7 LINE L1 5875 6012 -172 1370 206 45 21 chr11 95713310 95713597 -53069875 + AluJo SINE Alu 3 296 -16 818 174 66 85 chr11 95713597 95713714 -53069758 + L1MB7 LINE L1 6012 6130 -54 632 269 118 44 chr11 95715090 95715473 -53067999 - MLT1J1 LTR MaLR -21 425 15 3746 243 113 48 chr11 95715955 95716191 -53067281 + L1MC4 LINE L1 6458 6677 -1365 2688 154 13 7 chr11 95716191 95716639 -53066833 - L1PA15 LINE L1 -8 6157 5707 3746 243 113 48 chr11 95716639 95716925 -53066547 + L1MC4 LINE L1 6677 6943 -1099 2943 73 110 2 chr11 95716925 95717362 -53066110 + LTR19A LTR ERV1 1 484 -2 3746 243 113 48 chr11 95717362 95718177 -53065295 + L1MC4 LINE L1 6943 7903 -139 1286 247 101 42 chr11 95718177 95718654 -53064818 + MLT1D LTR MaLR 1 505 0 3746 243 113 48 chr11 95718654 95718789 -53064683 + L1MC4 LINE L1 7903 8028 -14 405 0 0 0 chr11 95719279 95719324 -53064148 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 180 278 111 0 chr11 95719326 95719380 -53064092 + L2 LINE L2 3200 3259 -13 327 378 46 19 chr11 95719755 95720078 -53063394 - L2 LINE L2 -798 2516 2185 685 314 6 0 chr11 95720253 95720428 -53063044 - MER5A DNA MER1_type -1 188 13 551 253 146 0 chr11 95720463 95720621 -53062851 + MER5A DNA MER1_type 9 189 0 339 261 50 34 chr11 95720736 95720855 -53062617 + MIR SINE MIR 94 214 -48 243 273 102 16 chr11 95721353 95721481 -53061991 + MIR SINE MIR 123 261 -1 2180 84 3 0 chr11 95722074 95722397 -53061075 - AluY SINE Alu 0 311 13 1160 185 15 50 chr11 95723012 95723272 -53060200 + L1MA10 LINE L1 6040 6290 -44 1277 126 49 31 chr11 95723274 95723497 -53059975 + MER30 DNA MER1_type 4 230 0 572 271 96 0 chr11 95723582 95723799 -53059673 - MIR SINE MIR -6 256 19 2233 104 0 3 chr11 95725414 95725723 -53057749 + AluY SINE Alu 1 308 -3 481 200 140 53 chr11 95725742 95725911 -53057561 + L1MD3 LINE L1 7607 7966 0 286 282 0 0 chr11 95726129 95726200 -53057272 - MIR SINE MIR -110 152 82 364 312 152 15 chr11 95726565 95726770 -53056702 + MIR SINE MIR 10 238 -24 321 267 47 0 chr11 95726869 95726955 -53056517 + Charlie2 DNA MER1_type 236 325 -2457 1149 234 67 42 chr11 95726956 95727405 -53056067 + Charlie2 DNA MER1_type 1880 2339 -523 21 71 0 0 chr11 95727518 95727560 -53055912 + AT_rich Low_complexity Low_complexity 1 42 0 2113 107 4 0 chr11 95727659 95727939 -53055533 + AluSp SINE Alu 1 281 -32 5690 157 68 31 chr11 95728234 95729420 -53054052 + Tigger3b DNA MER2_type 1 1230 -1 21 57 0 0 chr11 95729485 95729520 -53053952 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr11 95730423 95730447 -53053025 + AT_rich Low_complexity Low_complexity 1 24 0 488 270 29 15 chr11 95730506 95730643 -53052829 + Charlie1a DNA MER1_type 1 139 -1316 2561 184 72 33 chr11 95730763 95731346 -53052126 + L1MD1 LINE L1 5523 6128 -114 1273 236 23 69 chr11 95731344 95731780 -53051692 - L1 LINE L1 -776 5370 4955 * 555 116 35 0 chr11 95731780 95731866 -53051606 + AluY SINE Alu 1 89 -229 42263 38 26 2 chr11 95731870 95737268 -53046204 + L1P2 LINE L1 1 5526 -629 182 33 0 33 chr11 95738005 95738018 -53045454 + (TA)n Simple_repeat Simple_repeat 1 13 -16 2151 108 0 3 chr11 95738018 95738314 -53045158 + AluSg SINE Alu 1 295 -15 182 33 0 33 chr11 95738314 95738330 -53045142 + (TA)n Simple_repeat Simple_repeat 13 29 0 249 347 103 31 chr11 95738502 95738846 -53044626 - L3 LINE CR1 -130 1447 1115 718 181 52 93 chr11 95738861 95739054 -53044418 - AluJo SINE Alu -37 275 91 181 0 69 0 chr11 95739383 95739412 -53044060 + (CAAAAA)n Simple_repeat Simple_repeat 1 31 0 1403 212 50 20 chr11 95739465 95739762 -53043710 + AluJo SINE Alu 2 307 -5 269 214 0 11 chr11 95739782 95739871 -53043601 + GA-rich Low_complexity Low_complexity 1 88 0 761 116 18 0 chr11 95741082 95741194 -53042278 - AluSp/q SINE Alu -12 301 188 280 358 93 12 chr11 95741387 95741549 -53041923 + MIR3 SINE MIR 22 196 -12 290 271 0 0 chr11 95742214 95742284 -53041188 - L2 LINE L2 0 3313 3244 246 308 0 128 chr11 95742748 95742920 -53040552 - MLT1H LTR MaLR -110 439 290 228 323 12 31 chr11 95747446 95747607 -53035865 + L1ME4a LINE L1 5961 6118 -3 257 263 0 0 chr11 95747908 95747965 -53035507 + MIR SINE MIR 95 151 -111 312 342 44 9 chr11 95749371 95749485 -53033987 - L2 LINE L2 0 3313 3196 649 84 0 0 chr11 95749542 95749625 -53033847 - L1PA13 LINE L1 -545 5623 5541 2107 87 47 0 chr11 95749627 95749927 -53033545 + L1PA13 LINE L1 5606 5919 -244 243 0 0 0 chr11 95750027 95750054 -53033418 + (A)n Simple_repeat Simple_repeat 1 27 0 297 180 34 0 chr11 95750128 95750217 -53033255 + (TA)n Simple_repeat Simple_repeat 2 93 0 283 366 84 8 chr11 95750806 95750937 -53032535 - MIR3 SINE MIR -66 142 2 231 329 0 0 chr11 95752191 95752273 -53031199 + GA-rich Low_complexity Low_complexity 2 83 0 266 267 0 35 chr11 95754208 95754294 -53029178 + (CATA)n Simple_repeat Simple_repeat 4 86 0 2426 77 6 22 chr11 95754589 95754951 -53028521 + L1MA1 LINE L1 5947 6302 0 23 0 0 0 chr11 95754951 95754974 -53028498 + AT_rich Low_complexity Low_complexity 1 23 0 191 376 71 28 chr11 95755163 95755304 -53028168 + MIR SINE MIR 1 147 -115 212 293 47 47 chr11 95755935 95756041 -53027431 + MIR SINE MIR 31 136 -72 226 192 52 6 chr11 95756267 95756446 -53027026 + (TA)n Simple_repeat Simple_repeat 1 187 0 208 382 15 0 chr11 95757158 95757226 -53026246 + L3b LINE CR1 1506 1574 -9 373 291 138 16 chr11 95757635 95757824 -53025648 - MIR SINE MIR -43 219 8 441 252 129 0 chr11 95758124 95758271 -53025201 + MIR SINE MIR 97 262 0 1426 218 13 3 chr11 95758923 95759240 -53024232 - L1MC3 LINE L1 -2 7783 7464 1096 146 0 0 chr11 95759340 95759505 -53023967 + AluSg/x SINE Alu 121 285 -27 204 97 0 0 chr11 95759506 95759537 -53023935 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 344 254 118 9 chr11 95759774 95759884 -53023588 + MER5A DNA MER1_type 50 171 -18 231 114 0 0 chr11 95759990 95760025 -53023447 + (TG)n Simple_repeat Simple_repeat 1 35 0 1964 122 0 21 chr11 95760413 95760754 -53022718 + AluSg SINE Alu 1 335 0 1753 157 43 0 chr11 95760793 95761073 -53022399 + AluSx SINE Alu 1 292 -20 3422 176 44 2 chr11 95762540 95763182 -53020290 + L1PA15 LINE L1 5496 6164 -1 296 310 107 32 chr11 95763314 95763501 -53019971 + MIR SINE MIR 6 206 -56 2152 129 0 0 chr11 95763933 95764242 -53019230 - AluSc SINE Alu 0 309 1 752 224 62 78 chr11 95764669 95765040 -53018432 + MLT1A1 LTR MaLR 1 365 0 1462 193 3 42 chr11 95765151 95765457 -53018015 + AluJb SINE Alu 4 297 -15 2722 67 32 15 chr11 95765637 95766038 -53017434 - L1PA7 LINE L1 -4 6150 5743 474 231 131 0 chr11 95767327 95767457 -53016015 + MIR SINE MIR 100 246 -16 1696 138 3 48 chr11 95767971 95768260 -53015212 + AluSq SINE Alu 6 281 -32 220 324 14 27 chr11 95768752 95768826 -53014646 - MIR SINE MIR -111 97 25 325 315 122 33 chr11 95769314 95769527 -53013945 - MIR SINE MIR -11 251 20 428 296 75 30 chr11 95770382 95770581 -53012891 - L2 LINE L2 0 3313 3106 2168 100 0 0 chr11 95770913 95771202 -53012270 + AluSx SINE Alu 1 289 -23 228 232 116 29 chr11 95771230 95771299 -53012173 - L2 LINE L2 -559 2755 2681 24 67 0 0 chr11 95772265 95772310 -53011162 + AT_rich Low_complexity Low_complexity 1 45 0 231 235 12 62 chr11 95772336 95772417 -53011055 + MIR SINE MIR 176 252 -10 217 304 0 0 chr11 95772439 95772495 -53010977 - MIR SINE MIR -120 142 87 370 254 70 0 chr11 95772681 95772795 -53010677 + MIR3 SINE MIR 33 154 -54 371 313 116 58 chr11 95772815 95773039 -53010433 - MIR SINE MIR -6 256 20 225 260 46 104 chr11 95773322 95773495 -53009977 - MIR SINE MIR -14 248 86 297 28 0 0 chr11 95775252 95775288 -53008184 - L1PA6 LINE L1 -9 6145 6110 23 33 0 0 chr11 95775549 95775579 -53007893 + AT_rich Low_complexity Low_complexity 1 30 0 416 296 196 11 chr11 95776525 95776714 -53006758 - MIR SINE MIR -11 251 28 392 292 52 60 chr11 95777886 95778136 -53005336 + MER112 DNA MER1_type 2 249 -11 252 0 0 0 chr11 95778180 95778208 -53005264 + (TG)n Simple_repeat Simple_repeat 1 28 0 198 0 0 0 chr11 95778688 95778710 -53004762 + (A)n Simple_repeat Simple_repeat 1 22 0 219 139 0 0 chr11 95779122 95779158 -53004314 + (A)n Simple_repeat Simple_repeat 1 36 0 1347 246 99 9 chr11 95779620 95780177 -53003295 + L1M4 LINE L1 2439 3045 -3101 2307 93 0 13 chr11 95780183 95780496 -53002976 + AluSq SINE Alu 5 313 0 1210 246 60 130 chr11 95780615 95781786 -53001686 - L1 LINE L1 -2066 4080 3025 22 0 0 0 chr11 95781788 95781810 -53001662 + AT_rich Low_complexity Low_complexity 1 22 0 381 283 49 54 chr11 95782777 95782961 -53000511 + MIR SINE MIR 35 217 -45 568 123 0 57 chr11 95783040 95783146 -53000326 - L1PA8A LINE L1 -1 6130 6031 636 265 17 33 chr11 95783166 95783347 -53000125 - MIR SINE MIR -73 189 12 213 213 0 0 chr11 95783532 95783579 -52999893 + (TA)n Simple_repeat Simple_repeat 2 48 0 252 311 122 0 chr11 95783774 95783864 -52999608 + MIR SINE MIR 160 260 -2 267 133 145 36 chr11 95787497 95787580 -52995892 + L1PA6 LINE L1 6063 6154 0 210 274 33 20 chr11 95787865 95787962 -52995510 - MIR SINE MIR -27 181 86 333 0 0 0 chr11 95788120 95788157 -52995315 + (TC)n Simple_repeat Simple_repeat 2 38 0 252 0 0 0 chr11 95788156 95788184 -52995288 + (TG)n Simple_repeat Simple_repeat 1 28 0 * 303 28 0 0 chr11 95788183 95788219 -52995253 + (GA)n Simple_repeat Simple_repeat 1 36 0 237 33 0 0 chr11 95788552 95788582 -52994890 + (CA)n Simple_repeat Simple_repeat 1 30 0 189 132 0 0 chr11 95788582 95788620 -52994852 + (GA)n Simple_repeat Simple_repeat 1 38 0 799 291 156 3 chr11 95790846 95791166 -52992306 + L2 LINE L2 2423 2791 -523 336 304 52 17 chr11 95791675 95791790 -52991682 - L2 LINE L2 0 3272 3154 299 315 37 56 chr11 95792002 95792164 -52991308 - L2 LINE L2 -248 3024 2866 268 247 124 0 chr11 95793371 95793468 -52990004 + MIR SINE MIR 132 240 -22 392 267 75 48 chr11 95794267 95794413 -52989059 + MIR SINE MIR 95 244 -18 626 264 68 20 chr11 95794414 95794664 -52988808 + MIR SINE MIR 1 262 0 465 226 226 14 chr11 95795287 95795433 -52988039 - MER5B DNA MER1_type 0 178 2 1380 208 17 14 chr11 95795754 95796043 -52987429 - AluJo SINE Alu -22 290 1 219 349 0 0 chr11 95796492 95796555 -52986917 - L2 LINE L2 -9 3263 3201 31 0 0 0 chr11 95797534 95797565 -52985907 + AT_rich Low_complexity Low_complexity 1 31 0 279 173 0 0 chr11 95797709 95797761 -52985711 + GA-rich Low_complexity Low_complexity 1 52 0 200 209 23 0 chr11 95797787 95797830 -52985642 + GA-rich Low_complexity Low_complexity 1 44 0 281 267 33 33 chr11 95798905 95798995 -52984477 + L2 LINE L2 3224 3313 0 6859 70 161 9 chr11 95799104 95800154 -52983318 - L1P LINE L1 -3799 2347 1139 6819 58 23 2 chr11 95800154 95801102 -52982370 + L1PA5 LINE L1 5189 6154 0 217 155 35 0 chr11 95801137 95801195 -52982277 + (TA)n Simple_repeat Simple_repeat 1 60 0 398 154 46 131 chr11 95801345 95801520 -52981952 - MER53 DNA DNA 0 189 30 271 364 50 0 chr11 95802039 95802138 -52981334 + L2 LINE L2 3169 3272 0 222 37 0 0 chr11 95802721 95802748 -52980724 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 360 306 244 21 chr11 95803309 95803645 -52979827 - L1MC4a LINE L1 -1865 5943 5533 326 357 36 0 chr11 95803724 95803892 -52979580 - L1MC4a LINE L1 -2290 5518 5345 449 284 109 51 chr11 95803902 95804332 -52979140 - L1MC4a LINE L1 -815 5331 4877 798 241 48 5 chr11 95804387 95804574 -52978898 + MER20 DNA MER1_type 1 195 -24 2905 92 15 0 chr11 95804688 95805081 -52978391 + MLT2A1 LTR ERVL 1 399 -45 231 105 53 0 chr11 95805166 95805223 -52978249 + (TA)n Simple_repeat Simple_repeat 1 60 0 354 75 19 0 chr11 95805226 95805279 -52978193 + MLT2A1 LTR ERVL 391 444 0 25 0 0 0 chr11 95805315 95805340 -52978132 + AT_rich Low_complexity Low_complexity 1 25 0 320 281 84 43 chr11 95805744 95805963 -52977509 - L1M4 LINE L1 -1907 4239 4009 439 141 54 11 chr11 95806235 95806327 -52977145 - L1MB3 LINE L1 -2 6181 6086 299 315 45 11 chr11 95807140 95807229 -52976243 + L2 LINE L2 2986 3077 -195 513 275 0 0 chr11 95807962 95808140 -52975332 + (TATATG)n Simple_repeat Simple_repeat 2 179 0 325 222 49 83 chr11 95808145 95808289 -52975183 + MER74B LTR ERVL 461 599 -23 448 349 41 0 chr11 95809272 95809467 -52974005 + MIR SINE MIR 44 246 -16 195 42 0 0 chr11 95809821 95809845 -52973627 + (TTCC)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr11 95812161 95812182 -52971290 + AT_rich Low_complexity Low_complexity 1 21 0 2196 100 0 0 chr11 95812203 95812492 -52970980 - AluSc SINE Alu 0 309 21 3472 244 36 12 chr11 95812572 95813548 -52969924 + L1M2c LINE L1 2047 3045 -4521 776 153 47 0 chr11 95813548 95813698 -52969774 - L1MA5 LINE L1 -361 5939 5783 228 35 0 0 chr11 95813730 95813759 -52969713 + (TG)n Simple_repeat Simple_repeat 2 30 0 469 183 0 0 chr11 95813799 95813892 -52969580 - L1MA5 LINE L1 -507 5793 5701 1758 188 6 14 chr11 95813893 95814255 -52969217 + L1MA5 LINE L1 5940 6298 -2 1732 273 50 11 chr11 95814263 95815322 -52968150 + L1MB2 LINE L1 2714 3805 -3760 5516 213 53 17 chr11 95815326 95817532 -52965940 + L1MB2 LINE L1 5292 7587 -3 1475 239 124 24 chr11 95817606 95818444 -52965028 - L1M4 LINE L1 -2845 3301 2380 893 275 72 48 chr11 95818499 95819081 -52964391 + L1M2c LINE L1 5171 5766 -1799 254 318 0 0 chr11 95819087 95819153 -52964319 + MER96 DNA MER1_type? 11 76 -99 25 0 0 0 chr11 95819169 95819194 -52964278 + AT_rich Low_complexity Low_complexity 1 25 0 311 314 25 0 chr11 95819343 95819461 -52964011 + L1ME1 LINE L1 6041 6161 -5 238 301 103 27 chr11 95819738 95819884 -52963588 + MIR SINE MIR 19 175 -87 219 191 16 63 chr11 95819914 95819977 -52963495 + MIR SINE MIR 114 173 -89 407 324 8 16 chr11 95820346 95820489 -52962983 + MER5A DNA MER1_type 32 184 -5 527 292 90 41 chr11 95820693 95820960 -52962512 - L2 LINE L2 -5 3308 3029 291 300 12 0 chr11 95821847 95821927 -52961545 + L2 LINE L2 3233 3313 0 554 329 59 4 chr11 95823554 95823791 -52959681 - MIR SINE MIR -5 257 8 754 182 8 0 chr11 95824254 95824386 -52959086 + FLAM_C SINE Alu 3 135 -8 363 315 47 0 chr11 95824596 95824723 -52958749 - MIR SINE MIR -7 255 123 294 228 59 59 chr11 95824946 95825082 -52958390 - MLT1L LTR MaLR 0 615 480 573 329 43 20 chr11 95825245 95825500 -52957972 - MIR SINE MIR 0 262 2 180 324 44 0 chr11 95826364 95826432 -52957040 - L2 LINE L2 -1 3312 3242 252 0 0 0 chr11 95826858 95826886 -52956586 + (T)n Simple_repeat Simple_repeat 1 28 0 2047 116 30 3 chr11 95827018 95827321 -52956151 - AluSx SINE Alu -1 311 1 755 237 27 23 chr11 95827408 95827627 -52955845 - MLT1F1 LTR MaLR 0 567 348 324 0 0 0 chr11 95827651 95827687 -52955785 + (GA)n Simple_repeat Simple_repeat 1 36 0 642 246 6 24 chr11 95827692 95827859 -52955613 - MLT1F1 LTR MaLR -378 164 1 293 358 12 6 chr11 95828195 95828357 -52955115 - MLT1-int LTR MaLR -491 880 718 1287 245 167 11 chr11 95828800 95829266 -52954206 - MLT1F LTR MaLR -1 541 3 279 318 45 28 chr11 95829606 95829782 -52953690 - MIR SINE MIR -6 256 78 411 327 45 51 chr11 95829802 95830135 -52953337 + L1MEc LINE L1 56 386 -6010 4302 205 44 10 chr11 95830141 95831005 -52952467 + MER54A LTR ERVL 9 901 0 1855 264 64 20 chr11 95831023 95831863 -52951609 + L1MEc LINE L1 389 1265 -5131 2197 264 118 25 chr11 95831868 95833713 -52949759 + L1MEc LINE L1 1381 3365 -2850 234 224 155 0 chr11 95833823 95833881 -52949591 + L1MEc LINE L1 3568 3634 -2581 507 257 96 0 chr11 95834450 95834586 -52948886 - L1MC5 LINE L1 -837 7124 6976 293 340 0 0 chr11 95835068 95835162 -52948310 + MIR SINE MIR 159 252 -10 229 383 23 8 chr11 95835426 95835554 -52947918 + L2 LINE L2 2935 3064 -208 25 0 0 0 chr11 95835884 95835909 -52947563 + AT_rich Low_complexity Low_complexity 1 25 0 283 314 201 0 chr11 95836207 95836366 -52947106 - MIR SINE MIR -9 253 63 23 33 0 0 chr11 95836871 95836901 -52946571 + AT_rich Low_complexity Low_complexity 1 30 0 605 208 146 16 chr11 95837228 95837432 -52946040 + MER39 LTR ERV1 6 229 -424 2217 138 72 3 chr11 95837927 95838304 -52945168 + MER57A LTR ERV1 1 403 0 333 318 32 52 chr11 95838592 95838746 -52944726 - L2 LINE L2 -1 3271 3121 709 268 54 38 chr11 95838792 95839269 -52944203 - LTR33 LTR ERVL -1 520 1 580 257 80 37 chr11 95839274 95839461 -52944011 - MIR SINE MIR -43 219 25 278 294 47 12 chr11 95840384 95840469 -52943003 + MIR SINE MIR 104 191 -71 1553 184 71 22 chr11 95840608 95841015 -52942457 - L1 LINE L1 -1514 4632 4206 1247 171 42 0 chr11 95841015 95841278 -52942194 + L1MA4 LINE L1 6015 6288 -12 21 0 0 0 chr11 95841458 95841479 -52941993 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr11 95842424 95842447 -52941025 + AT_rich Low_complexity Low_complexity 1 23 0 26 74 0 0 chr11 95842513 95842567 -52940905 + AT_rich Low_complexity Low_complexity 1 54 0 321 346 98 20 chr11 95842668 95842821 -52940651 + L1MEd LINE L1 243 407 -5712 388 129 32 0 chr11 95842883 95842945 -52940527 + AluSg/x SINE Alu 97 160 -142 299 191 15 0 chr11 95843054 95843122 -52940350 + (TA)n Simple_repeat Simple_repeat 2 70 0 225 207 0 0 chr11 95843122 95843180 -52940292 - L1MC4 LINE L1 -1339 6703 6646 12741 150 63 22 chr11 95844375 95846698 -52936774 + Tigger1 DNA MER2_type 1 2418 0 953 52 0 0 chr11 95847724 95847840 -52935632 - L1P2 LINE L1 -1526 4620 4505 * 6329 41 2 0 chr11 95847835 95848922 -52934550 + L1P2 LINE L1 4613 5701 -454 472 326 46 6 chr11 95849232 95849407 -52934065 - MIR3 SINE MIR -11 197 16 9095 213 81 22 chr11 95849997 95853021 -52930451 - L1MA6 LINE L1 -1 7718 4301 1986 130 64 14 chr11 95853021 95853367 -52930105 - THE1B LTR MaLR -1 363 1 9095 213 81 22 chr11 95853367 95854762 -52928710 - L1MA6 LINE L1 -3418 4301 2990 189 0 0 0 chr11 95854769 95854790 -52928682 + (T)n Simple_repeat Simple_repeat 1 21 0 969 220 52 43 chr11 95855093 95855398 -52928074 - L1MA6 LINE L1 -4576 2989 2682 448 247 77 5 chr11 95855398 95855592 -52927880 - L1MA6 LINE L1 -4137 2428 2221 1051 328 13 33 chr11 95856866 95857317 -52926155 - L1MA6 LINE L1 -5504 1982 1541 23 54 0 0 chr11 95857454 95857491 -52925981 + AT_rich Low_complexity Low_complexity 1 37 0 300 280 54 0 chr11 95857541 95857634 -52925838 + LTR37B LTR ERV1 2 99 -369 955 204 42 8 chr11 95857876 95858136 -52925336 + LTR37B LTR ERV1 198 466 -2 1394 209 35 81 chr11 95859178 95859584 -52923888 + MLT1B LTR MaLR 1 387 -3 41 58 0 0 chr11 95859968 95860037 -52923435 + AT_rich Low_complexity Low_complexity 1 69 0 22 0 0 0 chr11 95860362 95860384 -52923088 + AT_rich Low_complexity Low_complexity 1 22 0 257 261 0 15 chr11 95861186 95861251 -52922221 - MIR SINE MIR -3 259 196 409 270 54 0 chr11 95861254 95861365 -52922107 + MLT1J LTR MaLR 1 117 -394 2308 159 54 0 chr11 95861802 95862268 -52921204 - L1 LINE L1 -1561 4585 4095 2146 186 6 42 chr11 95862269 95862741 -52920731 + L1MA7 LINE L1 4547 5001 -1145 * 3386 118 10 0 chr11 95862726 95863233 -52920239 + L1PB1 LINE L1 5597 6108 -43 4896 189 39 1 chr11 95863986 95865234 -52918238 + L1MA7 LINE L1 5000 6290 -1 186 133 0 0 chr11 95865244 95865274 -52918198 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 279 0 0 0 chr11 95866620 95866651 -52916821 + (CA)n Simple_repeat Simple_repeat 2 32 0 243 170 0 0 chr11 95866660 95866707 -52916765 + (TA)n Simple_repeat Simple_repeat 2 48 0 30 0 0 0 chr11 95866849 95866879 -52916593 + AT_rich Low_complexity Low_complexity 1 30 0 197 340 0 0 chr11 95868833 95868886 -52914586 + L2 LINE L2 3180 3232 -81 521 340 128 15 chr11 95869131 95869460 -52914012 - L2 LINE L2 -6 3307 2942 270 0 0 0 chr11 95870227 95870257 -52913215 + (TG)n Simple_repeat Simple_repeat 2 31 0 21 0 0 0 chr11 95870432 95870453 -52913019 + AT_rich Low_complexity Low_complexity 1 21 0 646 170 7 43 chr11 95870543 95870684 -52912788 + FLAM_C SINE Alu 1 136 -7 279 304 7 30 chr11 95871757 95871892 -52911580 + GA-rich Low_complexity Low_complexity 1 132 0 238 351 45 32 chr11 95873093 95873247 -52910225 + MER20B DNA MER1_type 2 157 -626 4792 184 51 12 chr11 95873386 95874818 -52908654 + L1MA9 LINE L1 4821 6309 -3 365 229 114 60 chr11 95875027 95875193 -52908279 - MER5B DNA MER1_type -3 175 1 219 69 0 0 chr11 95875254 95875283 -52908189 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 21 82 0 0 chr11 95875890 95875939 -52907533 + AT_rich Low_complexity Low_complexity 1 49 0 1433 209 46 52 chr11 95876525 95876893 -52906579 + MLT2D LTR ERVL 1 366 -48 339 192 0 0 chr11 95876907 95876980 -52906492 + (CA)n Simple_repeat Simple_repeat 2 74 0 312 140 0 0 chr11 95876998 95877052 -52906420 + MLT2B1 LTR ERVL 400 520 0 314 274 78 59 chr11 95878859 95879012 -52904460 + MLT1H LTR MaLR 83 238 -311 232 349 31 8 chr11 95879015 95879144 -52904328 + MLT1H1 LTR MaLR 157 288 -242 279 253 33 11 chr11 95879252 95879343 -52904129 + MLT1H1 LTR MaLR 463 555 0 253 171 0 182 chr11 95879425 95879513 -52903959 + HsTC2 DNA Tc2 1824 1895 -3 245 364 38 15 chr11 95879836 95879968 -52903504 + MIR SINE MIR 72 206 -56 844 227 24 63 chr11 95880169 95880500 -52902972 + L1M4 LINE L1 3724 4041 -2105 308 176 15 0 chr11 95880603 95880671 -52902801 + (TA)n Simple_repeat Simple_repeat 1 69 0 267 247 47 0 chr11 95880677 95880762 -52902710 + L1MC4 LINE L1 6615 6703 -1339 236 137 0 20 chr11 95880768 95880819 -52902653 - LTR66 LTR ERVL -171 439 390 316 241 46 11 chr11 95880840 95880927 -52902545 - L1MC4 LINE L1 -1339 6703 6614 3202 137 51 11 chr11 95880932 95881465 -52902007 - L1PA16 LINE L1 -37 6129 5576 278 331 81 33 chr11 95881883 95882155 -52901317 - L1MC4 LINE L1 -1894 5914 5630 26 82 0 0 chr11 95882404 95882465 -52901007 + AT_rich Low_complexity Low_complexity 1 61 0 22 56 0 0 chr11 95882605 95882641 -52900831 + AT_rich Low_complexity Low_complexity 1 36 0 331 126 6 115 chr11 95882740 95882914 -52900558 + (CAAAAA)n Simple_repeat Simple_repeat 5 159 0 29 78 0 0 chr11 95883162 95883226 -52900246 + AT_rich Low_complexity Low_complexity 1 64 0 364 179 13 0 chr11 95883233 95883311 -52900161 - L1PA12 LINE L1 -7502 79 1 339 258 54 49 chr11 95883322 95883520 -52899952 + HAL1b LINE L1 343 503 -845 1000 333 81 35 chr11 95883573 95883832 -52899640 - HAL1 LINE L1 -1616 891 645 342 0 0 0 chr11 95883832 95883870 -52899602 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 1000 333 81 35 chr11 95883870 95884430 -52899042 - HAL1 LINE L1 -1862 645 35 480 291 84 29 chr11 95884490 95884968 -52898504 - L1M4 LINE L1 -2337 3809 3306 29 104 0 0 chr11 95885066 95885172 -52898300 + AT_rich Low_complexity Low_complexity 1 106 0 2584 50 3 3 chr11 95885294 95885617 -52897855 - L1PA5 LINE L1 -107 6047 5725 451 87 0 0 chr11 95885617 95885685 -52897787 + L1PA5 LINE L1 6085 6153 -1 21 0 0 0 chr11 95885768 95885789 -52897683 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr11 95886073 95886103 -52897369 + AT_rich Low_complexity Low_complexity 1 30 0 356 302 57 13 chr11 95886150 95886309 -52897163 - L1M4 LINE L1 -3733 2413 2248 24 53 0 0 chr11 95886550 95886588 -52896884 + AT_rich Low_complexity Low_complexity 1 38 0 1183 178 12 86 chr11 95886774 95887100 -52896372 - L1MA10 LINE L1 -2 6332 6031 2215 193 18 32 chr11 95887102 95887595 -52895877 + L1MB1 LINE L1 5542 6027 -162 1948 97 0 0 chr11 95888013 95888299 -52895173 - AluSp SINE Alu 0 324 39 391 289 116 64 chr11 95888309 95888764 -52894708 + L1MC4a LINE L1 3836 4319 -1827 838 173 146 16 chr11 95888772 95888957 -52894515 - MLT1A1 LTR MaLR 0 365 157 25 0 0 0 chr11 95888967 95888992 -52894480 + AT_rich Low_complexity Low_complexity 1 25 0 1004 82 0 0 chr11 95888995 95889129 -52894343 + AluY SINE Alu 171 304 -7 725 197 7 7 chr11 95889129 95889271 -52894201 - MLT1A1 LTR MaLR -221 144 3 943 311 81 31 chr11 95889326 95890416 -52893056 + L1MC4a LINE L1 4429 5557 -605 * 1954 46 0 0 chr11 95890412 95890653 -52892819 - L1PA4 LINE L1 -1079 5067 4827 * 5448 46 12 1 chr11 95890639 95891528 -52891944 + L1PA4 LINE L1 5051 5946 -209 609 171 0 49 chr11 95891636 95891759 -52891713 + Tigger2a DNA MER2_type 1 117 -317 278 296 35 0 chr11 95891765 95891880 -52891592 + L1MC4a LINE L1 5910 6028 -1780 * 1196 266 84 20 chr11 95891859 95892704 -52890768 - L1ME LINE L1 -420 5746 4845 * 2094 199 2 0 chr11 95892700 95893108 -52890364 + L1P LINE L1 1951 2359 -3787 606 112 22 0 chr11 95893112 95893201 -52890271 + HSMAR1 DNA Mariner 1097 1187 -100 2773 19 0 0 chr11 95893201 95893511 -52889961 + AluYb8 SINE Alu 1 310 -8 337 39 131 0 chr11 95893622 95893752 -52889720 + (TA)n Simple_repeat Simple_repeat 2 148 0 388 181 32 0 chr11 95893752 95893846 -52889626 + (TAA)n Simple_repeat Simple_repeat 1 97 0 182 291 76 13 chr11 95894773 95894852 -52888620 + L2 LINE L2 3168 3251 -21 2147 104 3 25 chr11 95895069 95895386 -52888086 - AluSx SINE Alu 0 312 3 297 150 42 8 chr11 95896711 95896831 -52886641 + (TA)n Simple_repeat Simple_repeat 1 124 0 409 276 201 22 chr11 95896958 95897281 -52886191 + L1MC/D LINE L1 5409 5789 -2019 213 154 26 0 chr11 95897620 95897659 -52885813 + A-rich Low_complexity Low_complexity 1 40 0 315 297 22 11 chr11 95897815 95897906 -52885566 + MER5B DNA MER1_type 1 92 -86 504 106 0 0 chr11 95899228 95899313 -52884159 + (CA)n Simple_repeat Simple_repeat 2 86 0 254 200 12 100 chr11 95899843 95899923 -52883549 + MIR SINE MIR 75 147 -61 6125 185 12 12 chr11 95900222 95901823 -52881649 + L1MC1 LINE L1 4733 6333 0 534 276 111 3 chr11 95902241 95902440 -52881032 - MIR SINE MIR -48 214 1 323 275 143 21 chr11 95902895 95902980 -52880492 - MIR SINE MIR -43 219 146 186 43 0 0 chr11 95902980 95903003 -52880469 + (CAA)n Simple_repeat Simple_repeat 2 24 0 323 275 143 21 chr11 95903003 95903106 -52880366 - MIR SINE MIR -116 146 8 1820 172 0 3 chr11 95903361 95903663 -52879809 + AluJb SINE Alu 1 301 -11 180 307 93 13 chr11 95904153 95904228 -52879244 + MIR SINE MIR 78 158 -104 384 310 95 28 chr11 95904335 95904735 -52878737 + L1ME4a LINE L1 5691 6117 -4 1285 40 0 0 chr11 95905338 95905490 -52877982 - L1PA3 LINE L1 -5 6150 5999 3724 43 9 2 chr11 95905522 95905982 -52877490 + L1PA5 LINE L1 5686 6148 -6 300 342 127 0 chr11 95906173 95906331 -52877141 + MIR SINE MIR 49 226 -36 820 151 7 0 chr11 95907318 95907470 -52876002 - L1MA7 LINE L1 0 6291 6139 889 157 7 13 chr11 95907476 95907629 -52875843 - AluJb SINE Alu -13 299 148 850 228 0 0 chr11 95907656 95907818 -52875654 + FRAM SINE Alu 1 159 -17 1375 129 58 61 chr11 95907824 95908135 -52875337 - L1MA7 LINE L1 -150 6141 5832 701 310 4 29 chr11 95908359 95908601 -52874871 - MIR SINE MIR -25 237 2 539 285 29 7 chr11 95909136 95909273 -52874199 - MER5B DNA MER1_type -37 141 2 235 269 158 35 chr11 95909547 95909718 -52873754 - MIR SINE MIR -35 227 36 250 270 214 0 chr11 95910176 95910265 -52873207 + L2 LINE L2 3157 3264 -8 216 0 0 0 chr11 95910481 95910505 -52872967 + (TA)n Simple_repeat Simple_repeat 2 25 0 1441 203 73 22 chr11 95910617 95910972 -52872500 + L1MA4 LINE L1 5922 6294 -6 2685 270 72 48 chr11 95911169 95912520 -52870952 + L1PA13 LINE L1 1 1665 -5122 * 5245 175 67 11 chr11 95912514 95914208 -52869264 + L1PA15 LINE L1 4338 6148 -17 8846 43 7 0 chr11 95914208 95916077 -52867395 + L1PA4 LINE L1 4279 6153 -2 5245 175 67 11 chr11 95916077 95916095 -52867377 + L1PA15 LINE L1 6148 6164 -1 27 0 0 0 chr11 95916095 95916122 -52867350 + AT_rich Low_complexity Low_complexity 1 27 0 2134 105 0 3 chr11 95916122 95916449 -52867023 + AluY SINE Alu 1 326 0 243 246 15 15 chr11 95916770 95916835 -52866637 + GA-rich Low_complexity Low_complexity 1 65 0 919 284 80 25 chr11 95916900 95917589 -52865883 + L1M4 LINE L1 4384 5110 -1036 1079 197 28 178 chr11 95919612 95919780 -52863692 + MLT1A2 LTR MaLR 1 66 -308 6587 65 19 0 chr11 95919780 95920724 -52862748 - L1PA7 LINE L1 -11 6143 5186 1079 197 28 178 chr11 95920724 95920987 -52862485 + MLT1A2 LTR MaLR 66 367 -7 216 275 14 29 chr11 95921154 95921223 -52862249 + MIR SINE MIR 121 188 -74 306 355 101 53 chr11 95921346 95921802 -52861670 - L2 LINE L2 -18 3295 2818 2371 68 3 10 chr11 95921846 95922156 -52861316 + AluY SINE Alu 1 308 -3 1685 171 51 20 chr11 95922201 95922553 -52860919 - MLT1A1 LTR MaLR -2 363 1 673 271 279 35 chr11 95922812 95923388 -52860084 - L3 LINE CR1 -2 1575 859 208 259 46 107 chr11 95923449 95923519 -52859953 - L3 LINE CR1 -816 761 701 1507 180 62 3 chr11 95923519 95923808 -52859664 - AluJo SINE Alu -6 306 1 208 259 46 107 chr11 95923808 95923868 -52859604 - L3 LINE CR1 -876 701 639 200 342 0 35 chr11 95924604 95924718 -52858754 - MER5A DNA MER1_type -6 183 74 615 275 131 18 chr11 95924735 95924855 -52858617 + MIR SINE MIR 15 120 -142 234 0 0 0 chr11 95924855 95924881 -52858591 + (TAA)n Simple_repeat Simple_repeat 2 27 0 615 275 131 18 chr11 95924881 95924982 -52858490 + MIR SINE MIR 120 261 -1 222 37 0 0 chr11 95925200 95925227 -52858245 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 189 209 187 44 chr11 95925278 95925369 -52858103 - MIR3 SINE MIR -102 106 3 252 0 0 0 chr11 95926505 95926533 -52856939 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1801 154 11 3 chr11 95926535 95926820 -52856652 - AluSx SINE Alu -25 287 1 488 68 82 0 chr11 95928864 95928937 -52854535 + MADE1 DNA Mariner 1 79 -1 313 206 25 81 chr11 95929185 95929345 -52854127 + L1ME4a LINE L1 5672 5822 -299 23 0 0 0 chr11 95929571 95929594 -52853878 + AT_rich Low_complexity Low_complexity 1 23 0 237 167 42 0 chr11 95929972 95930020 -52853452 + L1ME4a LINE L1 5973 6022 -99 237 234 0 0 chr11 95930407 95930471 -52853001 + (ATAGG)n Simple_repeat Simple_repeat 5 68 0 271 302 3 3 chr11 95931446 95931622 -52851850 + L1ME LINE L1 5695 5870 -300 3420 130 8 11 chr11 95931766 95932295 -52851177 - MER1A DNA MER1_type 0 527 1 777 114 0 65 chr11 95933677 95933800 -52849672 + FAM SINE Alu 59 173 -12 1170 213 62 0 chr11 95934685 95934910 -52848562 + MER8 DNA MER2_type 1 239 0 187 324 152 14 chr11 95935404 95935549 -52847923 + MIR SINE MIR 92 256 -6 32 26 0 0 chr11 95935554 95935593 -52847879 + AT_rich Low_complexity Low_complexity 1 39 0 212 143 24 0 chr11 95936021 95936063 -52847409 + (TA)n Simple_repeat Simple_repeat 1 43 0 293 339 103 18 chr11 95936143 95936367 -52847105 - MIR SINE MIR 0 262 20 190 351 18 0 chr11 95936463 95936520 -52846952 + MIR SINE MIR 20 77 -131 1988 135 41 3 chr11 95937139 95937458 -52846014 + MLT1B LTR MaLR 58 388 -2 355 293 13 60 chr11 95937696 95937846 -52845626 + MIR SINE MIR 8 150 -112 222 282 56 0 chr11 95937922 95937993 -52845479 + MIR SINE MIR 176 250 -12 333 169 127 0 chr11 95938006 95938077 -52845395 + MER116 DNA Mariner 1 80 0 2854 140 22 28 chr11 95938130 95938667 -52844805 + L1MA8 LINE L1 5752 6285 -6 464 321 111 11 chr11 95938678 95938868 -52844604 + MIR SINE MIR 20 228 -34 282 311 109 8 chr11 95939363 95939482 -52843990 + MIR3 SINE MIR 70 200 -8 180 0 0 0 chr11 95941053 95941073 -52842399 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 * 231 61 0 0 chr11 95941072 95941105 -52842367 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 937 130 0 7 chr11 95941105 95941243 -52842229 - AluJo SINE Alu -43 269 133 219 36 0 0 chr11 95941246 95941274 -52842198 + (TG)n Simple_repeat Simple_repeat 1 28 0 247 219 73 0 chr11 95941275 95941357 -52842115 + L1MC4 LINE L1 6614 6701 -1341 317 322 0 0 chr11 95941363 95941453 -52842019 - L1MC4 LINE L1 -1339 6703 6614 * 322 266 0 43 chr11 95941381 95941475 -52841997 + L1MC4 LINE L1 6614 6703 -1339 572 167 0 0 chr11 95941482 95941578 -52841894 - AluJo SINE Alu -179 133 38 540 156 18 0 chr11 95941694 95941803 -52841669 + Charlie5 DNA MER1_type 2513 2623 0 225 380 80 7 chr11 95941874 95942011 -52841461 + MIR SINE MIR 7 153 -109 22 0 0 0 chr11 95942528 95942550 -52840922 + AT_rich Low_complexity Low_complexity 1 22 0 240 321 24 12 chr11 95943897 95943981 -52839491 - L2 LINE L2 0 3313 3229 2193 135 0 0 chr11 95944202 95944514 -52838958 + AluSx SINE Alu 1 312 0 333 0 0 0 chr11 95946483 95946520 -52836952 + (CA)n Simple_repeat Simple_repeat 2 38 0 288 323 26 99 chr11 95947730 95947863 -52835609 - MIR SINE MIR -8 254 138 2283 75 0 17 chr11 95947863 95948158 -52835314 + AluSc SINE Alu 2 291 -18 288 323 26 99 chr11 95948158 95948216 -52835256 - MIR SINE MIR -124 138 77 342 0 0 0 chr11 95948479 95948517 -52834955 + (TTA)n Simple_repeat Simple_repeat 2 39 0 1987 118 0 17 chr11 95948519 95948806 -52834666 - AluSq SINE Alu -31 282 1 361 384 58 0 chr11 95949205 95949343 -52834129 + L2 LINE L2 3127 3272 0 642 223 0 0 chr11 95949549 95949679 -52833793 - MLT1D LTR MaLR -2 503 374 1152 206 6 108 chr11 95949695 95950020 -52833452 - AluSp SINE Alu -13 300 9 1125 181 109 68 chr11 95950052 95950373 -52833099 - MLT1D LTR MaLR -166 339 6 546 136 10 0 chr11 95951234 95951337 -52832135 + L1MA9 LINE L1 6209 6312 0 247 169 8 169 chr11 95951619 95951737 -52831735 - MIR SINE MIR -98 164 66 181 318 106 24 chr11 95952230 95952315 -52831157 - MIR3 SINE MIR 0 208 117 416 304 22 22 chr11 95952424 95952562 -52830910 + L2 LINE L2 3134 3271 -1 233 389 80 58 chr11 95952667 95952978 -52830494 + L2 LINE L2 2888 3205 -67 269 170 0 0 chr11 95954054 95954101 -52829371 + L2 LINE L2 3267 3313 0 186 43 0 0 chr11 95954244 95954267 -52829205 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 269 348 99 7 chr11 95954456 95954597 -52828875 + L2 LINE L2 3104 3257 -15 373 283 135 51 chr11 95955185 95955422 -52828050 + MLT1J LTR MaLR 6 262 -249 500 317 111 41 chr11 95956950 95957392 -52826080 + MLT1J LTR MaLR 9 481 -30 475 356 5 32 chr11 95958350 95958538 -52824934 + MIR3 SINE MIR 20 202 -6 628 362 40 31 chr11 95958851 95959378 -52824094 - L2 LINE L2 -248 3024 2490 629 354 23 23 chr11 95959460 95959723 -52823749 - L3 LINE CR1 -65 1512 1250 294 75 0 0 chr11 95960152 95960192 -52823280 - MADE1 DNA Mariner -5 75 36 230 302 0 0 chr11 95960216 95960269 -52823203 - L2 LINE L2 -257 3056 3004 786 270 19 19 chr11 95960550 95960765 -52822707 + L1ME1 LINE L1 36 250 -6146 536 262 24 6 chr11 95960805 95960969 -52822503 + L1ME1 LINE L1 4851 5017 -1198 788 100 59 12 chr11 95960969 95961139 -52822333 + GA-rich Low_complexity Low_complexity 3 180 0 1734 222 81 8 chr11 95961158 95961720 -52821752 + L1ME1 LINE L1 5011 5604 -631 1132 230 18 69 chr11 95961701 95962117 -52821355 + L1ME1 LINE L1 5845 6239 -8 * 356 162 64 52 chr11 95962137 95962310 -52821162 + (CATATA)n Simple_repeat Simple_repeat 3 177 0 495 318 31 14 chr11 95963446 95963669 -52819803 - MIR SINE MIR -6 256 30 23 54 0 0 chr11 95963812 95963849 -52819623 + AT_rich Low_complexity Low_complexity 1 37 0 1633 176 16 40 chr11 95965880 95966256 -52817216 - L1MA7 LINE L1 -7 6284 5918 3002 168 23 18 chr11 95966893 95967498 -52815974 - L1ME2 LINE L1 -24 6284 5698 237 326 42 11 chr11 95967638 95967733 -52815739 + L2 LINE L2 3159 3256 -16 2085 126 3 0 chr11 95967810 95968104 -52815368 + AluSq SINE Alu 1 295 -18 23 0 0 0 chr11 95968267 95968290 -52815182 + AT_rich Low_complexity Low_complexity 1 23 0 372 92 92 0 chr11 95968362 95968427 -52815045 + MLT2A2 LTR ERVL 383 453 0 318 229 83 18 chr11 95968462 95968571 -52814901 - MIR SINE MIR -62 200 85 21 0 0 0 chr11 95968648 95968669 -52814803 + AT_rich Low_complexity Low_complexity 1 21 0 895 207 6 0 chr11 95968694 95968863 -52814609 + MSTD LTR MaLR 227 396 0 1721 253 111 13 chr11 95968863 95969421 -52814051 - L1M4 LINE L1 -1581 4565 3924 216 0 0 0 chr11 95969421 95969445 -52814027 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1721 253 111 13 chr11 95969445 95969579 -52813893 - L1M4 LINE L1 -2222 3924 3805 1786 263 70 19 chr11 95969589 95970644 -52812828 - L1ME1 LINE L1 -219 5881 4738 231 277 0 0 chr11 95970691 95970756 -52812716 - L1ME1 LINE L1 -5122 948 884 317 311 10 10 chr11 95970816 95970919 -52812553 - L1MEc LINE L1 -4573 1823 1721 454 288 31 12 chr11 95970921 95971081 -52812391 - L1MEc LINE L1 -4408 1988 1826 256 299 45 45 chr11 95971408 95971609 -52811863 - L1MEc LINE L1 -5617 588 388 277 62 42 0 chr11 95971735 95971783 -52811689 + (TCC)n Simple_repeat Simple_repeat 2 51 0 21 0 0 0 chr11 95972231 95972252 -52811220 + AT_rich Low_complexity Low_complexity 1 21 0 1165 179 37 88 chr11 95972254 95972527 -52810945 - AluJo SINE Alu -24 288 30 394 326 0 0 chr11 95972577 95972675 -52810797 + L2 LINE L2 3174 3271 -1 25 51 0 0 chr11 95973609 95973648 -52809824 + AT_rich Low_complexity Low_complexity 1 39 0 253 317 104 33 chr11 95973773 95973956 -52809516 - L2 LINE L2 0 3313 3118 29 0 0 0 chr11 95974043 95974072 -52809400 + AT_rich Low_complexity Low_complexity 1 29 0 5490 229 52 1 chr11 95975320 95977434 -52806038 + L1PA16 LINE L1 3989 6163 -3 2206 111 10 0 chr11 95977790 95978096 -52805376 - AluSc SINE Alu 0 309 1 1334 253 32 72 chr11 95978382 95978940 -52804532 + L1ME1 LINE L1 5626 6161 -5 411 254 44 0 chr11 95979330 95979444 -52804028 - L1ME1 LINE L1 -7 6159 6041 2156 234 66 46 chr11 95979465 95980992 -52802480 - L1ME2 LINE L1 -4 6287 4626 555 197 0 16 chr11 95981017 95981144 -52802328 - L1MA3 LINE L1 0 6305 6181 1897 130 34 48 chr11 95981247 95981600 -52801872 + THE1C LTR MaLR 2 349 -26 9890 126 19 29 chr11 95981604 95983200 -52800272 + THE1C-int LTR MaLR 1 1580 0 2146 141 24 27 chr11 95983200 95983576 -52799896 + THE1C LTR MaLR 1 375 0 214 306 0 0 chr11 95983576 95983648 -52799824 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 1933 126 0 74 chr11 95985115 95985440 -52798032 - AluSx SINE Alu -9 303 3 250 268 0 28 chr11 95985494 95985565 -52797907 + MLT1K LTR MaLR 181 249 -339 246 217 33 0 chr11 95985829 95985889 -52797583 + MLT1K LTR MaLR 520 581 -7 997 176 71 34 chr11 95986267 95986505 -52796967 + THE1B LTR MaLR 1 247 -117 5896 138 40 17 chr11 95986506 95987484 -52795988 + THE1C-int LTR MaLR 581 1580 0 1513 168 69 39 chr11 95987484 95987848 -52795624 + THE1C LTR MaLR 1 375 0 232 356 59 0 chr11 95987859 95987960 -52795512 + MIR SINE MIR 137 243 -19 243 331 52 78 chr11 95988137 95988291 -52795181 - L2 LINE L2 -86 3186 3037 292 171 0 57 chr11 95988365 95988435 -52795037 + MLT1J2 LTR MaLR 364 429 -21 310 275 11 11 chr11 95990331 95990422 -52793050 + CT-rich Low_complexity Low_complexity 1 91 0 28 71 0 0 chr11 95990522 95990578 -52792894 + AT_rich Low_complexity Low_complexity 1 56 0 2530 62 0 0 chr11 95990911 95991220 -52792252 - AluY SINE Alu -1 310 2 186 353 24 12 chr11 95991304 95991389 -52792083 + MIR SINE MIR 167 252 -10 241 231 46 31 chr11 95991556 95991621 -52791851 - MIR SINE MIR -109 153 88 232 225 28 0 chr11 95992153 95992224 -52791248 + (TA)n Simple_repeat Simple_repeat 2 74 0 457 340 0 29 chr11 95992880 95993086 -52790386 - L1ME LINE L1 -5840 230 31 401 250 19 81 chr11 95993425 95993585 -52789887 - MLT1H1 LTR MaLR -1 589 440 1100 207 19 129 chr11 95993591 95993926 -52789546 + MLT1A2 LTR MaLR 1 282 -92 2043 121 3 0 chr11 95993926 95994216 -52789256 + AluY SINE Alu 1 291 -20 1100 207 19 129 chr11 95994216 95994300 -52789172 + MLT1A2 LTR MaLR 282 374 0 182 275 12 0 chr11 95994329 95994409 -52789063 + CT-rich Low_complexity Low_complexity 2 82 0 626 300 43 6 chr11 95994411 95994662 -52788810 - MLT1H1 LTR MaLR -323 267 4 2528 52 0 3 chr11 95995281 95995591 -52787881 + AluY SINE Alu 1 309 -2 243 310 30 10 chr11 95996153 95996253 -52787219 - MSTD-int LTR MaLR -1269 102 1 1541 185 49 14 chr11 95996579 95996866 -52786606 - AluJb SINE Alu -13 299 3 281 348 58 0 chr11 95997228 95997383 -52786089 + MLT1J LTR MaLR 1 164 -347 684 118 36 0 chr11 95997857 95997967 -52785505 + L1PB4 LINE L1 6043 6156 0 368 265 35 53 chr11 95998231 95998401 -52785071 + HAL1b LINE L1 745 911 -437 24 32 0 0 chr11 95998407 95998438 -52785034 + AT_rich Low_complexity Low_complexity 1 31 0 380 263 85 51 chr11 95998568 95998804 -52784668 + HAL1 LINE L1 2264 2507 0 218 395 150 6 chr11 95998950 95999117 -52784355 + L2 LINE L2 2989 3179 -93 319 210 0 0 chr11 96000190 96000252 -52783220 - L1ME4a LINE L1 -10 6111 6050 196 343 96 0 chr11 96000881 96000954 -52782518 + L2 LINE L2 2545 2624 -690 246 264 165 0 chr11 96000958 96001049 -52782423 - L2 LINE L2 0 3313 3208 556 268 69 65 chr11 96001209 96001315 -52782157 + MIR SINE MIR 16 120 -142 1841 199 28 15 chr11 96001315 96001706 -52781766 - MSTD LTR MaLR 0 396 1 556 268 69 65 chr11 96001706 96001845 -52781627 + MIR SINE MIR 120 262 0 21 0 0 0 chr11 96002203 96002224 -52781248 + AT_rich Low_complexity Low_complexity 1 21 0 418 305 175 7 chr11 96002233 96002387 -52781085 + MER5A DNA MER1_type 4 183 -6 510 303 34 34 chr11 96002403 96002578 -52780894 - MER5B DNA MER1_type 0 178 4 1286 210 66 33 chr11 96002887 96003249 -52780223 + MLT1A2 LTR MaLR 1 374 0 301 264 54 103 chr11 96004206 96004252 -52779220 + MER112 DNA MER1_type 8 55 -205 9490 90 17 15 chr11 96004252 96004947 -52778525 - L1PA7 LINE L1 -7 6147 5455 2113 113 0 0 chr11 96004947 96005230 -52778242 - AluSx SINE Alu -17 295 13 9490 90 17 15 chr11 96005230 96006715 -52776757 - L1PA7 LINE L1 -699 5455 3989 301 264 54 103 chr11 96006715 96006929 -52776543 + MER112 DNA MER1_type 55 255 -5 297 341 120 30 chr11 96006929 96007096 -52776376 - MIR SINE MIR -80 182 1 1723 150 71 46 chr11 96007911 96008277 -52775195 + THE1C LTR MaLR 1 375 0 2796 198 48 23 chr11 96008321 96008928 -52774544 - MER67C LTR ERV1 -22 688 67 411 297 98 36 chr11 96008974 96009280 -52774192 - L1M4 LINE L1 -1192 4954 4630 372 287 43 53 chr11 96009767 96009955 -52773517 - HAL1 LINE L1 -1 2506 2321 1438 220 7 10 chr11 96009960 96010251 -52773221 + AluJb SINE Alu 3 292 -20 25 31 0 0 chr11 96010916 96010948 -52772524 + AT_rich Low_complexity Low_complexity 1 32 0 1663 142 0 0 chr11 96011045 96011278 -52772194 + AluSx SINE Alu 48 280 -32 273 57 0 0 chr11 96011279 96011314 -52772158 + (GGGGA)n Simple_repeat Simple_repeat 5 39 0 228 366 75 0 chr11 96012923 96013016 -52770456 + MER91A DNA MER1_type 94 193 -3 563 298 90 27 chr11 96013848 96014147 -52769325 - L2 LINE L2 -8 3305 2988 1628 220 62 15 chr11 96014153 96014558 -52768914 + MER63B DNA MER1_type 11 434 -2 949 195 32 71 chr11 96014692 96015163 -52768309 + MLT1C LTR MaLR 1 415 -52 501 241 219 26 chr11 96015764 96016029 -52767443 - MER46C DNA MER2_type -11 327 12 228 35 0 0 chr11 96016906 96016935 -52766537 + (T)n Simple_repeat Simple_repeat 1 29 0 227 154 31 62 chr11 96017745 96017810 -52765662 + A-rich Low_complexity Low_complexity 4 66 0 32 57 0 0 chr11 96020277 96020330 -52763142 + AT_rich Low_complexity Low_complexity 1 53 0 607 266 36 81 chr11 96020668 96020890 -52762582 + MIR SINE MIR 30 241 -21 397 187 44 11 chr11 96021779 96021870 -52761602 - MER94 DNA DNA -36 98 5 180 0 0 0 chr11 96023028 96023048 -52760424 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 291 269 186 0 chr11 96023421 96023577 -52759895 - MIR SINE MIR -7 255 71 405 295 233 0 chr11 96023956 96024088 -52759384 + MIR SINE MIR 2 102 -160 396 0 0 0 chr11 96024088 96024132 -52759340 + (TAA)n Simple_repeat Simple_repeat 2 45 0 405 295 233 0 chr11 96024132 96024209 -52759263 + MIR SINE MIR 102 260 -2 190 319 42 42 chr11 96024278 96024422 -52759050 + L3 LINE CR1 1273 1416 -161 25 157 0 0 chr11 96025531 96025582 -52757890 + GC_rich Low_complexity Low_complexity 1 51 0 25 91 0 0 chr11 96025849 96025904 -52757568 + AT_rich Low_complexity Low_complexity 1 55 0 352 243 23 29 chr11 96025954 96026127 -52757345 + (TTATA)n Simple_repeat Simple_repeat 5 176 0 427 23 64 70 chr11 96026134 96026305 -52757167 + (TA)n Simple_repeat Simple_repeat 1 170 0 335 119 48 36 chr11 96026278 96026446 -52757026 + (TTATA)n Simple_repeat Simple_repeat 5 174 0 * 252 135 48 48 chr11 96026475 96026579 -52756893 + (TATAA)n Simple_repeat Simple_repeat 4 107 0 629 180 167 27 chr11 96026846 96026996 -52756476 - MER2 DNA MER2_type -174 171 1 1356 93 10 36 chr11 96027500 96027694 -52755778 - AluSq SINE Alu -124 189 1 238 383 142 7 chr11 96028548 96028689 -52754783 + L2 LINE L2 3112 3271 -1 278 274 78 10 chr11 96029162 96029264 -52754208 + MER103 DNA DNA 8 116 -50 1434 241 37 49 chr11 96029641 96030191 -52753281 - L1ME1 LINE L1 -16 6148 5616 1500 101 0 21 chr11 96031503 96031740 -52751732 + L1MA5A LINE L1 6061 6292 -5 229 94 31 78 chr11 96032348 96032412 -52751060 + T-rich Low_complexity Low_complexity 3 63 0 41321 60 5 0 chr11 96032413 96038527 -52744945 - L1PA5 LINE L1 -3 6151 11 545 290 79 43 chr11 96039143 96039560 -52743912 - L1ME4a LINE L1 -177 5944 5513 321 316 80 70 chr11 96039977 96040604 -52742868 + L1ME LINE L1 3792 4424 -1722 1396 182 16 75 chr11 96040695 96041002 -52742470 - AluJb SINE Alu -23 289 1 21 0 0 0 chr11 96041006 96041027 -52742445 + AT_rich Low_complexity Low_complexity 1 21 0 314 294 48 8 chr11 96041523 96041649 -52741823 + L1ME LINE L1 5510 5640 -481 2231 113 0 0 chr11 96041677 96041978 -52741494 + AluSg SINE Alu 1 301 -9 530 352 39 23 chr11 96044443 96044699 -52738773 - MIR SINE MIR 0 262 3 21 36 0 0 chr11 96044838 96044866 -52738606 + AT_rich Low_complexity Low_complexity 1 28 0 21 82 0 0 chr11 96045120 96045169 -52738303 + AT_rich Low_complexity Low_complexity 1 49 0 190 319 42 42 chr11 96046020 96046164 -52737308 - L3 LINE CR1 -161 1416 1273 405 295 233 0 chr11 96046233 96046310 -52737162 - MIR SINE MIR -2 260 202 396 0 0 0 chr11 96046310 96046354 -52737118 + (TTA)n Simple_repeat Simple_repeat 2 45 0 405 295 233 0 chr11 96046354 96046486 -52736986 - MIR SINE MIR -60 202 2 291 269 186 0 chr11 96046865 96047021 -52736451 + MIR SINE MIR 71 255 -7 180 0 0 0 chr11 96047394 96047414 -52736058 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 397 187 44 11 chr11 96048573 96048664 -52734808 + MER94 DNA DNA 5 98 -36 607 266 36 81 chr11 96049553 96049775 -52733697 - MIR SINE MIR -21 241 30 32 57 0 0 chr11 96050113 96050166 -52733306 + AT_rich Low_complexity Low_complexity 1 53 0 205 182 0 0 chr11 96050770 96050803 -52732669 + (CATATA)n Simple_repeat Simple_repeat 3 35 0 4998 143 33 8 chr11 96050849 96052159 -52731313 - L1MA3 LINE L1 -1 6296 4927 3262 201 18 3 chr11 96052138 96053168 -52730304 - L1 LINE L1 -3180 4385 3339 * 6398 160 9 2 chr11 96053165 96054179 -52729293 - L1 LINE L1 -6225 1340 320 243 0 0 0 chr11 96054692 96054719 -52728753 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 530 223 18 0 chr11 96054721 96054833 -52728639 - FLAM_C SINE Alu -27 116 3 753 244 6 12 chr11 96055873 96056041 -52727431 - MER45A DNA AcHobo 0 178 12 410 296 43 26 chr11 96056530 96056645 -52726827 - L2 LINE L2 -10 3303 3187 198 348 116 22 chr11 96057771 96057909 -52725563 + L2 LINE L2 2933 3083 -189 763 212 35 0 chr11 96058010 96058180 -52725292 - MER3 DNA MER1_type -80 129 1 298 202 83 36 chr11 96058886 96058970 -52724502 + MIR SINE MIR 20 107 -155 189 0 0 0 chr11 96059009 96059030 -52724442 + (T)n Simple_repeat Simple_repeat 1 21 0 306 211 89 0 chr11 96059230 96059320 -52724152 - L1MA3 LINE L1 -1320 6245 6148 387 0 0 0 chr11 96059658 96059701 -52723771 + (CA)n Simple_repeat Simple_repeat 2 44 0 242 239 45 57 chr11 96059854 96059942 -52723530 + MIR SINE MIR 117 203 -59 531 279 74 21 chr11 96060043 96060233 -52723239 + MIR SINE MIR 5 204 -58 1801 72 4 17 chr11 96061025 96061261 -52722211 - AluSp SINE Alu -17 296 64 207 0 0 0 chr11 96062141 96062164 -52721308 + (CAAAAA)n Simple_repeat Simple_repeat 4 26 0 27 49 0 0 chr11 96062806 96062847 -52720625 + AT_rich Low_complexity Low_complexity 1 41 0 307 258 75 145 chr11 96062870 96063098 -52720374 - MIR SINE MIR -13 249 38 21 0 0 0 chr11 96063334 96063355 -52720117 + AT_rich Low_complexity Low_complexity 1 21 0 197 350 77 0 chr11 96063403 96063520 -52719952 - MIR SINE MIR -71 191 66 29 47 0 0 chr11 96063812 96063855 -52719617 + AT_rich Low_complexity Low_complexity 1 43 0 219 150 50 0 chr11 96063905 96063965 -52719507 + (TA)n Simple_repeat Simple_repeat 1 63 0 353 242 57 70 chr11 96064105 96064262 -52719210 + HAL1b LINE L1 1187 1341 -7 1588 204 0 3 chr11 96065017 96065306 -52718166 + AluJo SINE Alu 1 288 -24 285 29 0 0 chr11 96065309 96065343 -52718129 + (TA)n Simple_repeat Simple_repeat 2 35 0 28 0 0 0 chr11 96065634 96065662 -52717810 + AT_rich Low_complexity Low_complexity 1 28 0 339 306 57 19 chr11 96065835 96065992 -52717480 - L1MC4a LINE L1 -1907 5901 5739 14899 70 2 1 chr11 96066302 96068280 -52715192 - L1PA6 LINE L1 -2000 4146 2166 9519 62 0 0 chr11 96068282 96070274 -52713198 + L1PA6 LINE L1 4163 6154 0 252 115 39 19 chr11 96070435 96070487 -52712985 - L1MC5 LINE L1 -54 7907 7855 357 312 65 43 chr11 96070935 96071121 -52712351 + MIR SINE MIR 57 246 -16 370 324 93 49 chr11 96071199 96071446 -52712026 + L3 LINE CR1 1164 1421 -156 975 245 33 0 chr11 96071480 96071692 -52711780 - MER20 DNA MER1_type 0 219 1 375 23 0 0 chr11 96072781 96072825 -52710647 + (GGAA)n Simple_repeat Simple_repeat 4 47 0 214 140 20 20 chr11 96072825 96072875 -52710597 + GA-rich Low_complexity Low_complexity 4 53 0 1550 168 66 11 chr11 96073006 96073292 -52710180 - AluJo SINE Alu 0 312 11 352 319 24 76 chr11 96073417 96073627 -52709845 + L2 LINE L2 2972 3170 -102 557 286 66 22 chr11 96074786 96075013 -52708459 - MIR SINE MIR -25 237 1 451 326 48 26 chr11 96076221 96076491 -52706981 - LTR16A LTR ERVL -120 330 55 180 299 142 55 chr11 96076676 96076803 -52706669 - MIR3 SINE MIR -34 174 37 2092 101 69 6 chr11 96077216 96077583 -52705889 - LTR7 LTR ERV1 0 450 1 3840 88 13 11 chr11 96077583 96078139 -52705333 - HERVH LTR ERV1 0 7713 7157 2262 161 19 5 chr11 96078132 96078553 -52704919 - HERVH LTR ERV1 -1697 6016 5590 * 7661 153 9 6 chr11 96078544 96079945 -52703527 - HERVH LTR ERV1 -2287 4242 3806 2802 134 2 5 chr11 96079939 96080388 -52703084 - HERVH LTR ERV1 -4126 3587 3140 * 13779 129 7 30 chr11 96080367 96083103 -52700369 - HERVH LTR ERV1 -4718 2995 1 1828 114 106 19 chr11 96083105 96083472 -52700000 - LTR7 LTR ERV1 -2 448 1 967 303 125 7 chr11 96084302 96084734 -52698738 + L2 LINE L2 1807 2289 -1025 1785 241 40 7 chr11 96084742 96085194 -52698278 - L2 LINE L2 -529 2785 2319 411 319 72 91 chr11 96085297 96085727 -52697745 - HAL1 LINE L1 -2065 442 21 235 258 0 45 chr11 96085965 96086031 -52697441 + L2 LINE L2 3251 3313 0 188 405 89 55 chr11 96086167 96086582 -52696890 - L2 LINE L2 -16 3256 2828 29 47 0 0 chr11 96087103 96087146 -52696326 + AT_rich Low_complexity Low_complexity 1 43 0 1203 134 0 0 chr11 96087702 96087873 -52695599 - AluSg/x SINE Alu -14 296 126 2202 113 0 0 chr11 96087875 96088175 -52695297 - AluY SINE Alu -11 300 1 21 0 0 0 chr11 96088178 96088199 -52695273 + AT_rich Low_complexity Low_complexity 1 21 0 1802 158 0 7 chr11 96089168 96089446 -52694026 + AluSx SINE Alu 1 276 -36 49 52 0 0 chr11 96089511 96089588 -52693884 + AT_rich Low_complexity Low_complexity 1 77 0 486 241 219 26 chr11 96090325 96090590 -52692882 - MER46C DNA MER2_type -11 327 12 228 35 0 0 chr11 96091467 96091496 -52691976 + (T)n Simple_repeat Simple_repeat 1 29 0 227 154 31 62 chr11 96092306 96092371 -52691101 + A-rich Low_complexity Low_complexity 4 66 0 324 70 0 0 chr11 96094995 96095038 -52688434 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 429 273 18 18 chr11 96095254 96095364 -52688108 - L2 LINE L2 -14 3299 3190 370 326 77 10 chr11 96095402 96095598 -52687874 + LTR33A LTR ERVL 267 475 -48 21 36 0 0 chr11 96095755 96095783 -52687689 + AT_rich Low_complexity Low_complexity 1 28 0 351 281 18 10 chr11 96095903 96096032 -52687440 - MER63 DNA MER1_type -5 1683 694 1081 199 52 131 chr11 96096039 96096427 -52687045 + MLT1A2 LTR MaLR 3 359 -15 190 265 21 172 chr11 96096509 96096747 -52686725 - L2 LINE L2 -1519 1795 1594 241 407 39 16 chr11 96096950 96097132 -52686340 - L2 LINE L2 -496 2818 2633 189 0 0 0 chr11 96097220 96097241 -52686231 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 1668 165 9 47 chr11 96098052 96098374 -52685098 - AluJb SINE Alu -2 310 1 207 0 0 0 chr11 96098991 96099014 -52684458 + (T)n Simple_repeat Simple_repeat 1 23 0 217 277 11 85 chr11 96099833 96099927 -52683545 + MIR SINE MIR 66 152 -56 224 233 14 0 chr11 96100418 96100491 -52682981 + (TA)n Simple_repeat Simple_repeat 1 74 0 204 40 0 0 chr11 96100500 96100525 -52682947 + (GA)n Simple_repeat Simple_repeat 2 26 0 1331 195 77 11 chr11 96100525 96100786 -52682686 - AluJo SINE Alu -34 278 1 237 283 0 0 chr11 96101334 96101387 -52682085 + L2 LINE L2 3219 3271 -1 275 344 0 0 chr11 96102264 96102360 -52681112 + HERVL LTR ERVL 1481 1576 -4078 294 50 0 0 chr11 96102568 96102608 -52680864 + (TG)n Simple_repeat Simple_repeat 2 41 0 360 344 58 9 chr11 96102626 96102901 -52680571 - LTR16A LTR ERVL -78 372 34 28 29 0 0 chr11 96102968 96103003 -52680469 + AT_rich Low_complexity Low_complexity 1 35 0 268 258 0 0 chr11 96103029 96103091 -52680381 + MER94 DNA DNA 72 133 -1 5986 108 6 10 chr11 96103152 96104084 -52679388 - L1PB2 LINE L1 0 6151 5224 908 139 52 6 chr11 96104268 96104441 -52679031 - L1MA9 LINE L1 -2 6310 6130 574 107 0 0 chr11 96105303 96105387 -52678085 + AluSg/x SINE Alu 214 297 -12 22 0 0 0 chr11 96106114 96106136 -52677336 + AT_rich Low_complexity Low_complexity 1 22 0 33 25 0 0 chr11 96106249 96106289 -52677183 + AT_rich Low_complexity Low_complexity 1 40 0 2294 118 0 3 chr11 96106350 96106664 -52676808 - AluSq SINE Alu 0 313 1 226 294 0 0 chr11 96106820 96106871 -52676601 + (TG)n Simple_repeat Simple_repeat 2 52 0 21 0 0 0 chr11 96107381 96107402 -52676070 + AT_rich Low_complexity Low_complexity 1 21 0 253 315 0 27 chr11 96107949 96108022 -52675450 - L2 LINE L2 -4 3309 3239 180 111 0 0 chr11 96108336 96108363 -52675109 + (CCCCCT)n Simple_repeat Simple_repeat 5 31 0 1048 306 40 34 chr11 96108725 96109254 -52674218 - L1ME3A LINE L1 -286 5884 5353 256 179 13 26 chr11 96109311 96109389 -52674083 + (TA)n Simple_repeat Simple_repeat 2 78 0 404 216 34 14 chr11 96109420 96109568 -52673904 + (TA)n Simple_repeat Simple_repeat 2 152 0 11721 139 27 44 chr11 96111098 96111669 -52671803 - Tigger1 DNA MER2_type 0 2418 1839 2020 117 3 0 chr11 96111669 96111952 -52671520 + AluSx SINE Alu 22 305 -7 11721 139 27 44 chr11 96111952 96112497 -52670975 - Tigger1 DNA MER2_type -579 1839 1286 2278 184 2 9 chr11 96112497 96112937 -52670535 - L1PB4 LINE L1 -4 6152 5716 11721 139 27 44 chr11 96112937 96113975 -52669497 - Tigger1 DNA MER2_type -1132 1286 299 378 0 0 0 chr11 96115437 96115479 -52667993 + (TTTTA)n Simple_repeat Simple_repeat 2 43 0 1955 140 0 0 chr11 96115481 96115760 -52667712 - AluSg SINE Alu -31 279 1 639 265 118 5 chr11 96115776 96115980 -52667492 - MIR SINE MIR -1 261 35 829 199 0 0 chr11 96116140 96116296 -52667176 - AluJb SINE Alu -20 292 137 22 35 0 0 chr11 96116296 96116325 -52667147 + AT_rich Low_complexity Low_complexity 1 29 0 1857 163 14 0 chr11 96116335 96116630 -52666842 - AluSx SINE Alu -13 299 1 569 206 0 0 chr11 96116670 96116772 -52666700 - AluJ/FLAM SINE Alu -210 102 1 416 344 79 59 chr11 96116778 96117133 -52666339 - L2 LINE L2 -520 2794 2433 23 0 0 0 chr11 96117298 96117321 -52666151 + AT_rich Low_complexity Low_complexity 1 23 0 2271 209 35 2 chr11 96118583 96119091 -52664381 - L1 LINE L1 -1754 4392 3868 520 164 39 10 chr11 96119105 96119209 -52664263 + L1PA16 LINE L1 5929 6035 -131 1187 191 35 26 chr11 96119227 96119457 -52664015 - Tigger5 DNA MER2_type -2091 232 1 598 231 88 7 chr11 96119506 96119653 -52663819 + MER5A DNA MER1_type 28 186 -3 363 261 70 28 chr11 96119967 96120109 -52663363 + MIR SINE MIR 70 217 -45 1485 184 43 4 chr11 96120210 96120487 -52662985 - AluJo SINE Alu -24 288 1 33 0 0 0 chr11 96120617 96120650 -52662822 + AT_rich Low_complexity Low_complexity 1 33 0 240 262 36 24 chr11 96120654 96120738 -52662734 - MIR SINE MIR -3 259 175 212 352 23 11 chr11 96121528 96121616 -52661856 - MIR SINE MIR -110 152 64 430 219 77 58 chr11 96121738 96121893 -52661579 - MLT1J LTR MaLR -347 164 7 183 186 68 51 chr11 96122271 96122330 -52661142 + L2 LINE L2 1224 1283 -2031 579 279 103 18 chr11 96122999 96123271 -52660201 - L2 LINE L2 0 3313 3019 2048 124 7 0 chr11 96123343 96123641 -52659831 + AluSx SINE Alu 1 300 -12 303 390 59 12 chr11 96124036 96124205 -52659267 + L3b LINE CR1 1393 1569 -14 289 211 193 0 chr11 96125535 96125649 -52657823 - L1MC/D LINE L1 -2007 5801 5666 1049 326 26 42 chr11 96125670 96126170 -52657302 - L2 LINE L2 0 3313 2822 1661 194 24 0 chr11 96126256 96126586 -52656886 + L1MB3 LINE L1 5636 5973 -210 314 311 91 8 chr11 96127692 96127824 -52655648 - MIR SINE MIR 0 262 120 26 30 0 0 chr11 96128955 96128988 -52654484 + AT_rich Low_complexity Low_complexity 1 33 0 1496 209 87 43 chr11 96129585 96130207 -52653265 - Charlie2 DNA MER1_type -34 2828 2180 226 317 41 65 chr11 96130227 96130350 -52653122 - MER5B DNA MER1_type -57 121 2 259 303 0 0 chr11 96131313 96131389 -52652083 + (TG)n Simple_repeat Simple_repeat 1 76 0 346 316 74 0 chr11 96131571 96131761 -52651711 - L1ME LINE L1 -315 5806 5603 352 343 99 29 chr11 96131877 96132049 -52651423 - MIR3 SINE MIR -2 206 23 224 292 83 49 chr11 96132213 96132357 -52651115 - L3b LINE CR1 -131 1452 1304 38 22 0 0 chr11 96132999 96133044 -52650428 + AT_rich Low_complexity Low_complexity 1 45 0 2164 234 52 12 chr11 96133281 96133935 -52649537 - L1MEc LINE L1 -3006 3209 2530 468 239 29 64 chr11 96133928 96134162 -52649310 - L1MEc LINE L1 -4108 2288 2064 * 600 266 68 17 chr11 96134162 96134339 -52649133 + MER5A DNA MER1_type 4 189 0 468 239 29 64 chr11 96134339 96134384 -52649088 - L1MEc LINE L1 -4332 2064 2019 1126 199 5 9 chr11 96134406 96134617 -52648855 - AluJo SINE Alu -19 293 84 3242 277 70 50 chr11 96134642 96135705 -52647767 - L1MEc LINE L1 -4425 1971 850 1896 171 17 52 chr11 96135705 96136109 -52647363 - MLT1B LTR MaLR 0 390 1 3242 277 70 50 chr11 96136109 96136943 -52646529 - L1MEc LINE L1 -5546 850 35 21 36 0 0 chr11 96138637 96138665 -52644807 + AT_rich Low_complexity Low_complexity 1 28 0 342 212 141 0 chr11 96138811 96138896 -52644576 - L1MC4 LINE L1 -1339 6703 6607 2218 95 3 0 chr11 96139357 96139652 -52643820 + AluSg1 SINE Alu 13 308 -1 2217 93 0 32 chr11 96140534 96140847 -52642625 + AluSx SINE Alu 3 305 -7 1871 158 20 3 chr11 96141155 96141458 -52642014 - AluJb SINE Alu -1 311 4 25 31 0 0 chr11 96141608 96141640 -52641832 + AT_rich Low_complexity Low_complexity 1 32 0 216 88 53 35 chr11 96141648 96141705 -52641767 + (CATA)n Simple_repeat Simple_repeat 1 58 0 318 294 141 0 chr11 96142237 96142322 -52641150 - MIR SINE MIR -63 145 49 2058 82 0 27 chr11 96142327 96142680 -52640792 - AluY SINE Alu 0 345 1 212 146 0 42 chr11 96143317 96143365 -52640107 + (CTATT)n Simple_repeat Simple_repeat 2 47 0 1935 132 3 7 chr11 96144598 96144916 -52638556 + AluSq SINE Alu 1 313 0 42202 34 25 1 chr11 96145507 96151553 -52631919 + L1PA2 LINE L1 2 6155 0 45 0 0 0 chr11 96152615 96152660 -52630812 + AT_rich Low_complexity Low_complexity 1 45 0 2173 131 3 0 chr11 96153230 96153542 -52629930 + AluSq SINE Alu 1 313 0 959 205 81 0 chr11 96155292 96155502 -52627970 + MER82 DNA MER2_type 2 228 -425 243 0 0 0 chr11 96155525 96155552 -52627920 + (TA)n Simple_repeat Simple_repeat 1 27 0 735 199 25 6 chr11 96155653 96155814 -52627658 + MER82 DNA MER2_type 488 651 -2 2764 189 33 9 chr11 96156096 96156645 -52626827 + MER68 LTR ERV1 1 562 0 270 339 17 26 chr11 96157643 96157758 -52625714 + MIR SINE MIR 34 147 -115 312 236 124 43 chr11 96157922 96158083 -52625389 + MIR SINE MIR 57 230 -32 442 335 124 5 chr11 96159306 96159515 -52623957 + MIR SINE MIR 2 235 -27 832 301 98 82 chr11 96160347 96160813 -52622659 - L2 LINE L2 -449 2865 2385 1871 146 28 9 chr11 96160813 96161134 -52622338 - L1PB3 LINE L1 -4 6150 5824 832 301 98 82 chr11 96161134 96161301 -52622171 - L2 LINE L2 -929 2385 2222 556 352 41 15 chr11 96161391 96161661 -52621811 + LTR16A LTR ERVL 18 294 -156 618 332 39 22 chr11 96161678 96161910 -52621562 + HERV16 LTR ERVL 3 238 -4758 238 259 0 74 chr11 96162150 96162231 -52621241 + MLT2C1 LTR ERVL 269 343 -54 204 250 0 0 chr11 96162231 96162279 -52621193 + (TA)n Simple_repeat Simple_repeat 2 49 0 267 157 118 0 chr11 96162282 96162333 -52621139 + LTR16A LTR ERVL 253 309 -141 935 266 8 12 chr11 96162433 96162677 -52620795 - L1PB4 LINE L1 -2 6154 5912 379 351 163 26 chr11 96162747 96163097 -52620375 - L2 LINE L2 -1190 2124 1727 210 330 115 34 chr11 96163169 96163378 -52620094 - L2 LINE L2 -1588 1726 1501 1963 130 54 23 chr11 96163382 96163735 -52619737 + THE1B LTR MaLR 1 364 0 1122 221 9 22 chr11 96164058 96164284 -52619188 - MER58A DNA MER1_type 0 224 2 276 314 97 32 chr11 96164502 96164626 -52618846 + L2 LINE L2 3141 3272 0 575 300 83 0 chr11 96164995 96165175 -52618297 - MIR SINE MIR -40 222 28 356 274 69 40 chr11 96165694 96165869 -52617603 + MIR SINE MIR 70 249 -13 499 346 25 29 chr11 96168246 96168486 -52614986 - L3 LINE CR1 -19 1558 1320 681 223 91 36 chr11 96169699 96169919 -52613553 + MIR SINE MIR 31 262 0 25 0 0 0 chr11 96170480 96170505 -52612967 + AT_rich Low_complexity Low_complexity 1 25 0 321 26 0 0 chr11 96171391 96171429 -52612043 + (TG)n Simple_repeat Simple_repeat 1 38 0 246 322 94 35 chr11 96172349 96172520 -52610952 + L2 LINE L2 3133 3313 0 529 256 128 18 chr11 96172711 96173039 -52610433 + HAL1 LINE L1 2024 2387 -120 289 315 94 16 chr11 96173460 96173587 -52609885 + L2 LINE L2 3177 3313 0 418 269 140 35 chr11 96173974 96174145 -52609327 + MLT1J LTR MaLR 117 305 -206 182 356 59 8 chr11 96174201 96174319 -52609153 + MIR SINE MIR 129 252 -10 22 35 0 0 chr11 96175005 96175034 -52608438 + AT_rich Low_complexity Low_complexity 1 29 0 531 191 9 0 chr11 96176007 96176112 -52607360 - FLAM_A SINE Alu -6 136 31 377 331 50 0 chr11 96176422 96176561 -52606911 + MIR SINE MIR 53 198 -64 674 351 76 27 chr11 96176561 96177116 -52606356 + L2 LINE L2 2215 2796 -518 366 354 87 0 chr11 96177229 96177356 -52606116 + L2 LINE L2 3134 3271 -1 208 386 50 0 chr11 96177727 96177828 -52605644 - L2 LINE L2 -276 2996 2891 571 310 10 25 chr11 96178196 96178393 -52605079 + MIR SINE MIR 68 261 -1 200 119 0 24 chr11 96178791 96178833 -52604639 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 390 255 134 22 chr11 96178939 96179108 -52604364 + MIR SINE MIR 25 207 -55 299 298 152 18 chr11 96179373 96179544 -52603928 - MIR SINE MIR -19 243 50 823 301 125 48 chr11 96180522 96180937 -52602535 + LTR67 LTR ERVL 106 552 -5 262 316 63 51 chr11 96181066 96181224 -52602248 + MIR SINE MIR 5 164 -98 206 283 0 0 chr11 96181617 96181663 -52601809 - L2 LINE L2 -1 3312 3267 280 159 125 34 chr11 96182161 96182249 -52601223 - L1ME4a LINE L1 -1 6120 6025 1738 269 44 20 chr11 96183011 96183554 -52599918 + L1MCb LINE L1 2 557 -5488 1706 225 53 86 chr11 96183638 96184522 -52598950 + L1MCb LINE L1 551 1442 -4851 * 2275 196 70 26 chr11 96184519 96185060 -52598412 + L1MC3 LINE L1 6738 7302 -483 2979 170 54 12 chr11 96185070 96185699 -52597773 - MER39 LTR ERV1 -11 696 5 2381 167 42 6 chr11 96185704 96186176 -52597296 + L1MC3 LINE L1 7297 7785 0 430 352 138 32 chr11 96186300 96187311 -52596161 - L2 LINE L2 0 3313 2185 28 29 0 0 chr11 96187498 96187533 -52595939 + AT_rich Low_complexity Low_complexity 1 35 0 219 308 64 0 chr11 96187625 96187703 -52595769 + MIR SINE MIR 106 188 -74 227 298 221 0 chr11 96187808 96187912 -52595560 - MIR3 SINE MIR -54 154 28 182 333 0 0 chr11 96188283 96188334 -52595138 - MIR SINE MIR -121 87 37 2353 165 8 0 chr11 96188799 96189199 -52594273 + MER57A LTR ERV1 1 403 0 315 274 32 31 chr11 96189216 96189328 -52594144 - MIR SINE MIR -65 143 41 212 273 18 18 chr11 96189350 96189405 -52594067 - MIR SINE MIR -134 74 20 329 263 136 8 chr11 96190139 96190257 -52593215 + MIR SINE MIR 105 237 -25 318 160 0 0 chr11 96190366 96190416 -52593056 - 5S rRNA rRNA -29 92 43 23 33 0 0 chr11 96190521 96190551 -52592921 + AT_rich Low_complexity Low_complexity 1 30 0 326 308 158 0 chr11 96190570 96190690 -52592782 + MIR SINE MIR 16 154 -108 2064 203 5 8 chr11 96190690 96191046 -52592426 + MLT1B LTR MaLR 1 357 -33 12700 150 30 39 chr11 96191046 96193487 -52589985 + Tigger1 DNA MER2_type 1 2418 0 2064 203 5 8 chr11 96193487 96193519 -52589953 + MLT1B LTR MaLR 357 388 -2 356 259 56 9 chr11 96193521 96193629 -52589843 + MIR SINE MIR 150 262 0 189 331 75 15 chr11 96193780 96193913 -52589559 + L2 LINE L2 3133 3273 -40 35 54 0 0 chr11 96194050 96194106 -52589366 + AT_rich Low_complexity Low_complexity 1 56 0 202 286 0 0 chr11 96194208 96194250 -52589222 + L2 LINE L2 3245 3286 -27 190 244 0 22 chr11 96194219 96194264 -52589208 + MIR SINE MIR 211 254 -8 * 194 301 89 49 chr11 96195466 96195589 -52587883 + MIR SINE MIR 39 166 -96 23 0 0 0 chr11 96196137 96196160 -52587312 + AT_rich Low_complexity Low_complexity 1 23 0 794 249 42 32 chr11 96196533 96196750 -52586722 - MIR SINE MIR -28 234 16 186 43 0 0 chr11 96196935 96196958 -52586514 + (CA)n Simple_repeat Simple_repeat 1 23 0 225 301 68 0 chr11 96197074 96197147 -52586325 + L2 LINE L2 3230 3307 -6 189 0 0 0 chr11 96198224 96198245 -52585227 + (TTG)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chr11 96198997 96199018 -52584454 + AT_rich Low_complexity Low_complexity 1 21 0 2373 86 0 38 chr11 96199975 96200314 -52583158 - L1PA12 LINE L1 -315 5853 5528 549 72 60 0 chr11 96200314 96200390 -52583082 + L1PA13 LINE L1 6075 6162 -1 990 224 44 35 chr11 96200581 96200809 -52582663 + L1M4b LINE L1 7 236 -6623 3050 250 58 34 chr11 96200811 96201879 -52581593 - L1MEd LINE L1 -1545 5099 4006 201 108 0 0 chr11 96201879 96201916 -52581556 + (TTTTTG)n Simple_repeat Simple_repeat 2 38 0 216 0 0 0 chr11 96202394 96202418 -52581054 + (T)n Simple_repeat Simple_repeat 1 24 0 4007 238 44 16 chr11 96202434 96202907 -52580565 - L1MEd LINE L1 -2667 3977 3518 2262 110 0 0 chr11 96202907 96203206 -52580266 + AluSq SINE Alu 1 299 -14 4007 238 44 16 chr11 96203206 96204139 -52579333 - L1MEd LINE L1 -3126 3518 2534 1152 157 23 1 chr11 96204154 96204453 -52579019 - MER1B DNA MER1_type -1 338 1 981 265 54 32 chr11 96204475 96204912 -52578560 - L1MEd LINE L1 -4453 2372 1794 389 254 0 56 chr11 96204908 96205050 -52578422 - L1MEd LINE L1 -4987 1555 1422 * 289 282 11 105 chr11 96205237 96205361 -52578111 - MIR SINE MIR -77 131 7 318 302 78 0 chr11 96206162 96206278 -52577194 + MER5B DNA MER1_type 53 177 -1 348 270 27 68 chr11 96206379 96206527 -52576945 - HERVL LTR ERVL -1361 4293 4152 470 361 32 12 chr11 96207306 96207555 -52575917 + ERVL LTR ERVL 5071 5324 -440 853 296 117 62 chr11 96208005 96208757 -52574715 + LTR50 LTR ERVL 1 793 -2 306 148 0 0 chr11 96208767 96208821 -52574651 + (CA)n Simple_repeat Simple_repeat 2 55 0 444 229 0 0 chr11 96208964 96209069 -52574403 - Charlie5 DNA MER1_type -260 2352 2248 287 225 0 14 chr11 96209085 96209156 -52574316 - Charlie5 DNA MER1_type -2513 99 30 1086 306 10 6 chr11 96209336 96209830 -52573642 + L1M4 LINE L1 3126 3621 -2525 190 56 56 0 chr11 96209830 96209866 -52573606 + T-rich Low_complexity Low_complexity 2 39 0 8513 217 14 8 chr11 96209867 96211851 -52571621 + L1 LINE L1 2564 4559 -1587 259 357 135 16 chr11 96212423 96212608 -52570864 + L2 LINE L2 2747 2953 -361 484 334 90 33 chr11 96212634 96213113 -52570359 - L1MEd LINE L1 -5611 1023 518 188 286 29 14 chr11 96213175 96213245 -52570227 - MIR3 SINE MIR -11 197 127 2268 151 51 0 chr11 96214403 96214774 -52568698 + MLT1B LTR MaLR 1 390 0 326 359 73 24 chr11 96214840 96215046 -52568426 + MIR SINE MIR 21 236 -26 1228 331 89 73 chr11 96215226 96217056 -52566416 + L2 LINE L2 1376 3234 -79 506 316 18 16 chr11 96217091 96217290 -52566182 - MIR SINE MIR -3 205 2 365 286 61 0 chr11 96217547 96217645 -52565827 + MIR3 SINE MIR 82 185 -23 322 351 81 20 chr11 96217946 96218094 -52565378 - L2 LINE L2 -12 3260 3104 414 325 25 13 chr11 96218898 96219055 -52564417 - MIR SINE MIR -92 170 12 2395 84 3 0 chr11 96219316 96219625 -52563847 - AluY SINE Alu -1 310 1 309 227 45 4 chr11 96219890 96220005 -52563467 + MIR SINE MIR 99 256 -6 185 313 62 0 chr11 96220196 96220260 -52563212 - L2 LINE L2 -12 3301 3234 231 343 55 0 chr11 96220427 96220500 -52562972 + L2 LINE L2 3196 3272 0 32 0 0 0 chr11 96221386 96221418 -52562054 + AT_rich Low_complexity Low_complexity 1 32 0 195 217 65 0 chr11 96221957 96222003 -52561469 + L2 LINE L2 3262 3310 -3 241 360 45 50 chr11 96222411 96222611 -52560861 - MIR SINE MIR -51 211 13 1962 130 7 13 chr11 96222756 96223063 -52560409 + AluSx SINE Alu 1 305 -7 196 351 43 21 chr11 96223277 96223371 -52560101 + MIR SINE MIR 48 143 -119 335 197 16 31 chr11 96223410 96223537 -52559935 + (TTATA)n Simple_repeat Simple_repeat 3 127 0 285 206 164 0 chr11 96223646 96223719 -52559753 + L2 LINE L2 3229 3313 0 186 390 0 13 chr11 96223784 96223861 -52559611 - L2 LINE L2 -15 3298 3223 358 297 98 16 chr11 96224630 96224876 -52558596 + L1M4 LINE L1 5098 5363 -783 1121 103 6 6 chr11 96224999 96225173 -52558299 - L1PA11 LINE L1 0 6174 6001 9801 194 41 48 chr11 96225176 96227131 -52556341 + L1 LINE L1 2591 4528 -1618 1944 138 3 0 chr11 96227131 96227437 -52556035 + AluSx SINE Alu 1 307 0 9801 194 41 48 chr11 96227437 96228111 -52555361 + L1 LINE L1 4528 5205 -941 822 205 35 6 chr11 96228183 96228354 -52555118 + MER63A DNA MER1_type 1 176 -34 312 70 0 0 chr11 96229008 96229051 -52554421 + (TG)n Simple_repeat Simple_repeat 1 43 0 962 204 6 0 chr11 96229067 96229248 -52554224 - MER58A DNA MER1_type 0 224 43 4487 183 26 23 chr11 96229288 96230215 -52553257 - L1MA7 LINE L1 0 6291 5362 13866 148 20 26 chr11 96230233 96232543 -52550929 + Tigger1 DNA MER2_type 11 2308 -110 2401 151 25 16 chr11 96232543 96232974 -52550498 - L1PA16 LINE L1 -2 6164 5730 13866 148 20 26 chr11 96232974 96233085 -52550387 + Tigger1 DNA MER2_type 2308 2418 0 3267 177 45 19 chr11 96233085 96233264 -52550208 - L1MA8 LINE L1 -64 6227 6054 1832 173 0 3 chr11 96233264 96233564 -52549908 - AluSx SINE Alu -13 299 1 3267 177 45 19 chr11 96233564 96234080 -52549392 - L1MA8 LINE L1 -237 6054 5514 1622 144 4 0 chr11 96234234 96234477 -52548995 - AluSg SINE Alu -31 279 36 5814 193 24 15 chr11 96234484 96235911 -52547561 - L1MA8 LINE L1 -743 5403 4085 360 361 68 30 chr11 96237017 96237313 -52546159 + LTR16A1 LTR ERVL 147 453 -4 325 317 152 7 chr11 96238261 96238406 -52545066 - MIR SINE MIR -78 184 19 193 386 91 14 chr11 96238986 96239206 -52544266 - MIR SINE MIR -23 239 3 22 56 0 0 chr11 96239366 96239402 -52544070 + AT_rich Low_complexity Low_complexity 1 36 0 1245 135 0 35 chr11 96239402 96239632 -52543840 - L1MA4 LINE L1 -5 6295 6074 527 258 91 8 chr11 96239635 96239899 -52543573 - Charlie2 DNA MER1_type -94 2768 2483 455 123 0 0 chr11 96239917 96239990 -52543482 + L1MA8 LINE L1 5997 6069 -222 * 1679 132 17 17 chr11 96239963 96240258 -52543214 + L1MA8 LINE L1 5994 6288 -3 434 233 73 100 chr11 96240308 96240609 -52542863 - Charlie2 DNA MER1_type -705 2157 1865 851 283 57 22 chr11 96240620 96240934 -52542538 - Charlie2 DNA MER1_type -2457 325 1 278 355 100 25 chr11 96240964 96241164 -52542308 + MIR SINE MIR 48 262 0 258 224 90 0 chr11 96242198 96242265 -52541207 - MIR SINE MIR -26 236 164 330 348 87 14 chr11 96242968 96243175 -52540297 - MIR SINE MIR -21 241 20 2092 126 0 0 chr11 96243513 96243806 -52539666 - AluSx SINE Alu -18 294 2 475 319 0 0 chr11 96243895 96244011 -52539461 - MER5B DNA MER1_type -52 126 11 220 195 24 0 chr11 96244237 96244278 -52539194 - L2 LINE L2 -23 3290 3249 545 246 80 11 chr11 96245008 96245183 -52538289 + MER5A DNA MER1_type 3 189 0 1130 66 20 13 chr11 96245468 96245655 -52537817 - AluSq SINE Alu 0 322 135 407 337 27 43 chr11 96245655 96245757 -52537715 - MIR SINE MIR -79 183 84 2327 155 41 5 chr11 96245757 96246170 -52537302 + MSTA LTR MaLR 1 428 0 407 337 27 43 chr11 96246170 96246251 -52537221 - MIR SINE MIR -178 84 3 2003 130 27 0 chr11 96246675 96246967 -52536505 + AluSx SINE Alu 1 300 -12 704 303 29 2 chr11 96247179 96247378 -52536094 - MIR SINE MIR -45 217 17 345 314 38 13 chr11 96247436 96247595 -52535877 + MIR SINE MIR 58 220 -42 542 277 128 21 chr11 96248641 96249005 -52534467 + MLT1J2 LTR MaLR 20 435 -11 288 271 113 23 chr11 96249219 96249352 -52534120 + MLT1J LTR MaLR 1 145 -366 189 0 0 0 chr11 96249594 96249615 -52533857 + (T)n Simple_repeat Simple_repeat 1 21 0 30 45 0 0 chr11 96249628 96249672 -52533800 + GC_rich Low_complexity Low_complexity 1 44 0 1534 144 27 12 chr11 96249825 96250082 -52533390 - AluSx SINE Alu -8 304 44 515 208 9 0 chr11 96250750 96250856 -52532616 + L1PB4 LINE L1 6042 6148 -8 24 0 0 0 chr11 96250946 96250970 -52532502 + AT_rich Low_complexity Low_complexity 1 24 0 1998 95 39 0 chr11 96250973 96251256 -52532216 - L1PA6 LINE L1 -11 6143 5850 195 312 79 37 chr11 96251256 96251445 -52532027 + L2 LINE L2 3038 3234 -79 502 303 19 12 chr11 96251516 96251678 -52531794 - MIR SINE MIR -98 164 2 9578 84 36 4 chr11 96251775 96253617 -52529855 - L1PA6 LINE L1 -324 5830 3926 27864 119 21 18 chr11 96253721 96258171 -52525301 - L1P LINE L1 -1680 4466 1 2245 87 0 7 chr11 96258848 96259146 -52524326 - AluY SINE Alu -15 296 1 847 164 11 55 chr11 96259150 96259333 -52524139 - L1MD1 LINE L1 -10 6232 6058 7050 239 101 26 chr11 96259334 96262162 -52521310 - L1MDa LINE L1 -2313 4227 1611 467 152 0 0 chr11 96262162 96262241 -52521231 + MADE1 DNA Mariner 1 79 -1 7050 239 101 26 chr11 96262241 96262435 -52521037 - L1MDa LINE L1 -4929 1611 1433 1732 161 10 23 chr11 96262435 96262734 -52520738 + AluSq SINE Alu 1 295 -18 7050 239 101 26 chr11 96262734 96263633 -52519839 - L1MDa LINE L1 -5107 1433 17 252 0 0 0 chr11 96264481 96264509 -52518963 + (TG)n Simple_repeat Simple_repeat 2 29 0 211 242 0 16 chr11 96264981 96265043 -52518429 + (TA)n Simple_repeat Simple_repeat 1 61 0 243 270 0 32 chr11 96265096 96265159 -52518313 + MER5A DNA MER1_type 82 142 -47 4691 224 80 18 chr11 96265322 96266668 -52516804 + Charlie1a DNA MER1_type 11 1439 -16 1749 162 4 7 chr11 96266755 96267033 -52516439 + AluSx SINE Alu 1 277 -35 4564 43 7 4 chr11 96267805 96268364 -52515108 + L1PA5 LINE L1 5585 6145 -9 259 224 90 0 chr11 96268505 96268572 -52514900 + MIR SINE MIR 164 236 -26 412 377 108 34 chr11 96269886 96270265 -52513207 + L2 LINE L2 2839 3245 -27 263 295 13 0 chr11 96270597 96270675 -52512797 - L2 LINE L2 -2 3311 3233 564 241 152 0 chr11 96271005 96271163 -52512309 - MIR SINE MIR -44 218 37 225 0 0 0 chr11 96271437 96271462 -52512010 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 2014 110 0 0 chr11 96271472 96271735 -52511737 - AluSx SINE Alu -49 263 1 1959 278 121 42 chr11 96272134 96272437 -52511035 + L1MC4 LINE L1 6757 7035 -1007 356 0 23 0 chr11 96272437 96272481 -52510991 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 1959 278 121 42 chr11 96272481 96273369 -52510103 + L1MC4 LINE L1 7035 8042 0 183 225 75 0 chr11 96273551 96273591 -52509881 - L2 LINE L2 -14 3258 3216 326 346 15 15 chr11 96274275 96274411 -52509061 + MIR SINE MIR 123 258 -4 194 104 0 42 chr11 96274808 96274856 -52508616 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 260 288 131 20 chr11 96275174 96275327 -52508145 + MER46C DNA MER2_type 4 173 -165 204 111 0 0 chr11 96275330 96275366 -52508106 + (CTG)n Simple_repeat Simple_repeat 2 37 0 848 187 0 7 chr11 96275381 96275520 -52507952 - FRAM SINE Alu -39 137 1 294 324 69 0 chr11 96275528 96275673 -52507799 + MER46C DNA MER2_type 184 338 0 6383 142 40 32 chr11 96276046 96277267 -52506205 - Tigger3b DNA MER2_type 0 1231 1 216 260 178 0 chr11 96277351 96277424 -52506048 + MIR SINE MIR 90 175 -87 297 329 0 0 chr11 96277432 96277508 -52505964 - L2 LINE L2 -15 3298 3223 403 339 0 0 chr11 96277878 96277987 -52505485 - MIR SINE MIR -64 144 36 350 271 165 8 chr11 96278096 96278229 -52505243 + LTR33 LTR ERVL 368 521 0 311 325 182 21 chr11 96278230 96278460 -52505012 + L2 LINE L2 2835 3119 -194 405 286 33 56 chr11 96278460 96278673 -52504799 - MER63A DNA MER1_type -1 209 2 311 325 182 21 chr11 96278673 96278722 -52504750 + L2 LINE L2 3119 3159 -154 313 396 11 0 chr11 96278787 96278878 -52504594 - L2 LINE L2 -35 3237 3146 30 77 0 0 chr11 96279033 96279098 -52504374 + AT_rich Low_complexity Low_complexity 1 65 0 257 394 15 15 chr11 96279382 96279514 -52503958 - MIR SINE MIR -85 177 46 519 341 64 22 chr11 96279560 96279874 -52503598 + L2 LINE L2 1807 2133 -1181 822 344 59 61 chr11 96279916 96280058 -52503414 - MER45C DNA AcHobo -320 633 492 1353 185 103 49 chr11 96280058 96280425 -52503047 - MLT1B LTR MaLR -3 387 1 822 344 59 61 chr11 96280425 96280890 -52502582 - MER45C DNA AcHobo -461 492 27 694 235 15 10 chr11 96281115 96281378 -52502094 + HsTC2 DNA Tc2 1577 1895 -3 299 352 21 35 chr11 96281557 96281699 -52501773 + L2 LINE L2 3173 3312 -1 248 235 81 73 chr11 96281821 96281957 -52501515 - MIR SINE MIR -10 252 116 222 348 11 33 chr11 96282541 96282633 -52500839 - MIR SINE MIR -82 126 37 625 257 145 19 chr11 96283049 96283263 -52500209 + MIR SINE MIR 7 247 -15 288 316 107 23 chr11 96283456 96283633 -52499839 - MIR SINE MIR -70 192 1 261 353 55 0 chr11 96283715 96283826 -52499646 - MIR SINE MIR -77 131 16 256 271 173 45 chr11 96285326 96285459 -52498013 + MIR3 SINE MIR 38 187 -21 243 318 0 0 chr11 96285748 96285814 -52497658 - MER5B DNA MER1_type 0 178 113 1627 145 0 4 chr11 96285816 96286064 -52497408 + AluSq SINE Alu 1 247 -66 318 344 229 0 chr11 96287576 96287733 -52495739 + MIR SINE MIR 66 258 -4 281 230 70 50 chr11 96287827 96287927 -52495545 - MER5B DNA MER1_type -29 149 48 183 80 0 0 chr11 96288016 96288041 -52495431 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 1011 70 35 0 chr11 96289890 96290061 -52493411 + (TC)n Simple_repeat Simple_repeat 1 177 0 280 62 78 0 chr11 96290061 96290125 -52493347 + CT-rich Low_complexity Low_complexity 1 69 0 24 67 0 0 chr11 96291848 96291893 -52491579 + AT_rich Low_complexity Low_complexity 1 45 0 522 328 149 27 chr11 96292013 96292661 -52490811 - L2 LINE L2 -213 3059 2317 305 253 163 63 chr11 96292941 96293304 -52490168 - L1MC5 LINE L1 -74 7887 7489 2853 3 0 0 chr11 96293317 96293623 -52489849 + AluYa5 SINE Alu 1 306 -5 186 333 0 0 chr11 96294139 96294187 -52489285 + MIR SINE MIR 92 139 -69 1088 278 79 42 chr11 96294224 96294652 -52488820 - L2 LINE L2 -4 3309 2866 239 220 20 0 chr11 96294965 96295015 -52488457 + C-rich Low_complexity Low_complexity 5 55 0 1969 128 40 40 chr11 96295392 96295767 -52487705 + THE1C LTR MaLR 1 375 0 1856 167 121 21 chr11 96296747 96297136 -52486336 - MSTA LTR MaLR 0 428 1 190 70 0 47 chr11 96297305 96297348 -52486124 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 1019 276 64 84 chr11 96297591 96298234 -52485238 - L1M4 LINE L1 -1497 4649 3995 742 11 0 0 chr11 96298234 96298322 -52485150 + L1PA2 LINE L1 6066 6153 -2 1019 276 64 84 chr11 96298322 96298617 -52484855 - L1M4 LINE L1 -2151 3995 3736 2300 91 3 3 chr11 96298617 96298925 -52484547 - AluY SINE Alu -3 308 1 1019 276 64 84 chr11 96298925 96299154 -52484318 - L1M4 LINE L1 -2410 3736 3504 2332 289 59 30 chr11 96299196 96299975 -52483497 + L1PA15 LINE L1 1 802 -5985 2344 118 36 8 chr11 96300001 96300364 -52483108 - THE1C LTR MaLR -2 373 1 928 298 76 26 chr11 96300393 96300816 -52482656 + L1PA15 LINE L1 1166 1609 -5178 443 218 77 6 chr11 96300794 96300964 -52482508 + L1PA15 LINE L1 3757 3938 -2859 * 5019 190 35 34 chr11 96300966 96302305 -52481167 + L1PA15 LINE L1 4990 6328 -488 2421 82 3 0 chr11 96302305 96302610 -52480862 + AluY SINE Alu 1 306 -5 5019 190 35 34 chr11 96302610 96303100 -52480372 + L1PA15 LINE L1 6328 6816 0 1294 231 31 7 chr11 96303135 96303425 -52480047 + AluJb SINE Alu 1 297 -5 575 273 16 0 chr11 96303495 96303678 -52479794 - L1ME3A LINE L1 -188 6051 5866 318 172 0 31 chr11 96303694 96303758 -52479714 - L1ME3A LINE L1 -739 5508 5447 239 290 22 78 chr11 96303776 96303892 -52479580 - L1ME3A LINE L1 -919 5296 5175 2029 117 32 0 chr11 96303892 96304174 -52479298 - AluSg SINE Alu -17 293 3 239 290 22 78 chr11 96304174 96304278 -52479194 - L1ME3A LINE L1 -1040 5175 5091 3539 100 70 21 chr11 96304278 96304846 -52478626 + MER4A LTR ERV1 5 600 0 239 290 22 78 chr11 96304846 96304893 -52478579 - L1ME3A LINE L1 -1124 5091 5043 293 250 26 0 chr11 96304942 96305018 -52478454 - L1ME3A LINE L1 -3316 2899 2822 1074 62 0 0 chr11 96305104 96305279 -52478193 - AluY SINE Alu 0 327 153 450 289 127 13 chr11 96305309 96305537 -52477935 - L1ME3A LINE L1 -3997 2399 2146 23 0 0 0 chr11 96305692 96305715 -52477757 + AT_rich Low_complexity Low_complexity 1 23 0 1826 86 8 12 chr11 96305838 96306082 -52477390 + AluY SINE Alu 1 243 -68 2238 215 100 31 chr11 96306131 96306809 -52476663 - MER50 LTR ERV1 0 734 10 2023 139 3 0 chr11 96307484 96307779 -52475693 + AluSq SINE Alu 1 296 -17 237 211 19 39 chr11 96308239 96308343 -52475129 + CT-rich Low_complexity Low_complexity 3 104 0 262 345 18 0 chr11 96308448 96308561 -52474911 + MIR3 SINE MIR 91 205 -3 324 308 40 81 chr11 96308587 96308785 -52474687 + MLT1K LTR MaLR 185 374 -214 22 20 8 0 chr11 96309746 96309815 -52473657 + AT_rich Low_complexity Low_complexity 1 29 0 357 280 63 51 chr11 96310071 96310246 -52473226 - MIR SINE MIR -55 207 31 29 28 0 0 chr11 96310380 96310416 -52473056 + AT_rich Low_complexity Low_complexity 1 36 0 2027 123 0 23 chr11 96310744 96311044 -52472428 - AluSc SINE Alu -16 293 1 216 348 159 14 chr11 96311084 96311222 -52472250 - MIR SINE MIR -75 187 30 3532 181 10 10 chr11 96311396 96312069 -52471403 + L1MC1 LINE L1 5659 6331 -2 461 134 21 21 chr11 96312158 96312255 -52471217 + L1MC2 LINE L1 6092 6188 -156 1658 184 14 0 chr11 96312759 96313041 -52470431 - AluJo SINE Alu -26 286 1 194 314 23 58 chr11 96313244 96313330 -52470142 - L2 LINE L2 -18 3295 3213 355 290 84 30 chr11 96313893 96314024 -52469448 + L2 LINE L2 3133 3270 -2 2797 189 32 49 chr11 96314244 96314928 -52468544 - L1MA9 LINE L1 0 6184 5509 219 139 0 0 chr11 96315738 96315774 -52467698 - L3 LINE CR1 -9 1568 1533 247 265 12 36 chr11 96316212 96316295 -52467177 + L2 LINE L2 3192 3272 0 196 363 58 35 chr11 96317677 96317848 -52465624 + L2 LINE L2 228 402 -2912 1063 240 32 0 chr11 96317852 96318069 -52465403 - MER58A DNA MER1_type 0 224 1 627 254 99 20 chr11 96318677 96318878 -52464594 - MIR SINE MIR 0 262 46 662 304 110 41 chr11 96321676 96322139 -52461333 + MLT1G1 LTR MaLR 5 499 -56 1670 159 6 40 chr11 96322139 96322386 -52461086 + AluJb SINE Alu 1 236 -76 3485 159 29 2 chr11 96322386 96323004 -52460468 + MER41B LTR ERV1 1 635 0 1670 159 6 40 chr11 96323004 96323077 -52460395 + AluJb SINE Alu 236 310 -2 198 0 0 0 chr11 96323360 96323382 -52460090 + (A)n Simple_repeat Simple_repeat 1 22 0 301 346 0 9 chr11 96323410 96323517 -52459955 + MIR SINE MIR 151 256 -6 216 175 0 0 chr11 96323633 96323673 -52459799 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 208 277 0 0 chr11 96324286 96324333 -52459139 + MIR SINE MIR 66 112 -150 326 278 56 21 chr11 96325526 96325670 -52457802 - MER110 LTR ERV1 -14 477 329 2171 122 7 0 chr11 96326211 96326514 -52456958 - AluSq SINE Alu -8 305 1 1260 124 5 5 chr11 96327326 96327512 -52455960 - AluJo SINE Alu -1 311 126 681 313 121 50 chr11 96327560 96328039 -52455433 - MLT1K LTR MaLR -4 584 72 338 312 70 67 chr11 96328965 96329250 -52454222 + L2 LINE L2 3028 3313 0 258 293 0 0 chr11 96329462 96329537 -52453935 - MLT1I LTR MaLR -26 383 309 331 173 37 12 chr11 96329657 96329738 -52453734 - L1MA9 LINE L1 -73 6239 6157 3317 159 21 102 chr11 96330094 96330981 -52452491 - L1 LINE L1 -1438 4708 3893 2666 177 6 23 chr11 96330990 96331815 -52451657 + L1MA4 LINE L1 4961 5768 -532 573 115 0 0 chr11 96331831 96331918 -52451554 + (TA)n Simple_repeat Simple_repeat 1 87 0 1412 156 55 14 chr11 96331921 96332210 -52451262 + L1MA4 LINE L1 5997 6297 -3 2118 191 29 107 chr11 96332323 96332492 -52450980 - L1MC3 LINE L1 -180 7605 7424 354 98 0 16 chr11 96332492 96332553 -52450919 + L1PA13 LINE L1 6101 6160 -3 2118 191 29 107 chr11 96332553 96333038 -52450434 - L1MC3 LINE L1 -361 7424 7002 4068 173 57 39 chr11 96333271 96334899 -52448573 - L1MA9 LINE L1 -31 6281 4632 295 313 0 0 chr11 96335151 96335231 -52448241 - LTR50 LTR ERVL -715 80 1 387 0 0 0 chr11 96335506 96335549 -52447923 + (TC)n Simple_repeat Simple_repeat 2 44 0 1842 158 0 0 chr11 96335555 96335828 -52447644 - AluSx SINE Alu -36 276 4 380 89 25 38 chr11 96335988 96336067 -52447405 + L1MA3 LINE L1 6228 6305 0 279 340 20 0 chr11 96336229 96336329 -52447143 - L2 LINE L2 0 3313 3212 431 302 41 107 chr11 96336547 96336789 -52446683 - MIR SINE MIR -29 233 8 283 295 0 57 chr11 96336831 96336953 -52446519 - L2 LINE L2 -3 3269 3155 1658 132 17 0 chr11 96338040 96338328 -52445144 + L1MA9 LINE L1 6015 6307 -5 283 247 52 146 chr11 96339935 96340222 -52443250 - L2 LINE L2 -817 2497 2238 993 298 16 22 chr11 96340356 96340675 -52442797 - MLT1J2 LTR MaLR -131 319 3 554 291 122 8 chr11 96340676 96340913 -52442559 - L2 LINE L2 -1092 2222 1959 349 159 0 16 chr11 96341333 96341396 -52442076 - AluS SINE Alu -239 64 3 198 197 155 0 chr11 96341772 96341843 -52441629 + MIR SINE MIR 127 208 -54 362 278 85 100 chr11 96342018 96342299 -52441173 + L2 LINE L2 3032 3308 -5 184 372 26 0 chr11 96342379 96342457 -52441015 - L2 LINE L2 -71 3201 3122 966 183 0 6 chr11 96342499 96342663 -52440809 - MLT1C LTR MaLR 0 467 305 299 43 0 22 chr11 96343177 96343223 -52440249 + (CAGAGA)n Simple_repeat Simple_repeat 4 48 0 189 0 0 0 chr11 96343391 96343412 -52440060 + (TG)n Simple_repeat Simple_repeat 2 22 0 741 208 137 50 chr11 96343413 96343654 -52439818 - MER2 DNA MER2_type 0 345 84 333 257 14 36 chr11 96345093 96345233 -52438239 + (TCTCTG)n Simple_repeat Simple_repeat 2 138 0 889 196 0 0 chr11 96345264 96345461 -52438011 - FRAM SINE Alu 0 195 1 2348 78 3 16 chr11 96345470 96345776 -52437696 - AluSc SINE Alu -7 302 1 363 296 21 43 chr11 96346267 96346453 -52437019 + L2 LINE L2 3107 3288 -25 581 264 37 6 chr11 96347832 96347995 -52435477 - MER5A DNA MER1_type -21 168 1 1490 199 44 25 chr11 96348366 96348772 -52434700 + Charlie1b DNA MER1_type 58 471 -52 259 175 70 0 chr11 96348777 96348834 -52434638 - L1MB7 LINE L1 -12 6172 6112 1868 80 0 0 chr11 96348963 96349213 -52434259 - L1PA5 LINE L1 -115 6039 5790 428 238 84 141 chr11 96349235 96349335 -52434137 - L1ME1 LINE L1 -142 6024 5920 1405 226 27 0 chr11 96349335 96349627 -52433845 - AluJb SINE Alu -2 300 1 428 238 84 141 chr11 96349627 96349753 -52433719 - L1ME1 LINE L1 -246 5920 5811 800 98 0 0 chr11 96349772 96349884 -52433588 - L1PA16 LINE L1 -9 6157 6046 263 342 61 86 chr11 96350046 96350490 -52432982 + L2 LINE L2 1816 2248 -1066 707 172 8 16 chr11 96350560 96350688 -52432784 + LTR54 LTR ERV1 1 127 -383 478 131 16 0 chr11 96350835 96350933 -52432539 + L1MA1 LINE L1 5835 5938 -362 1651 115 7 4 chr11 96350937 96351206 -52432266 + L1MA2 LINE L1 5867 6136 -168 27 29 0 0 chr11 96351395 96351429 -52432043 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr11 96352107 96352135 -52431337 + AT_rich Low_complexity Low_complexity 1 28 0 261 242 16 0 chr11 96352342 96352404 -52431068 + MIR SINE MIR 199 261 -1 271 173 36 0 chr11 96352798 96352937 -52430535 + (TA)n Simple_repeat Simple_repeat 1 144 0 22 0 0 0 chr11 96352937 96352959 -52430513 + AT_rich Low_complexity Low_complexity 1 22 0 1877 112 14 4 chr11 96353929 96354205 -52429267 - L1PA11 LINE L1 -175 5999 5721 257 273 123 41 chr11 96354323 96354543 -52428929 - L1MCc LINE L1 -6063 360 123 420 257 204 22 chr11 96354851 96355213 -52428259 - L1MC4 LINE L1 -490 7552 7125 413 282 124 26 chr11 96355241 96355475 -52427997 - MLT1L LTR MaLR -145 470 214 296 296 45 0 chr11 96356403 96356491 -52426981 - L2 LINE L2 -34 3279 3188 24 0 0 0 chr11 96356690 96356714 -52426758 + AT_rich Low_complexity Low_complexity 1 24 0 2002 90 14 0 chr11 96357110 96357387 -52426085 - AluY SINE Alu -30 281 1 203 301 108 11 chr11 96357507 96357600 -52425872 + L2 LINE L2 2442 2543 -771 440 248 133 64 chr11 96357724 96357921 -52425551 + MLT2B2 LTR ERVL 190 402 -118 252 170 0 0 chr11 96357963 96358016 -52425456 + (CA)n Simple_repeat Simple_repeat 1 53 0 273 120 0 60 chr11 96358016 96358066 -52425406 + MLT2D LTR ERVL 367 413 -1 211 286 0 32 chr11 96359386 96359449 -52424023 + GA-rich Low_complexity Low_complexity 2 62 0 297 304 109 14 chr11 96360457 96360677 -52422795 + L1ME4a LINE L1 5531 5777 -393 688 296 140 49 chr11 96360942 96361435 -52422037 + LTR41 LTR ERVL 229 766 -7 24 32 0 0 chr11 96361809 96361840 -52421632 + AT_rich Low_complexity Low_complexity 1 31 0 23 54 0 0 chr11 96362701 96362738 -52420734 + AT_rich Low_complexity Low_complexity 1 37 0 217 192 27 123 chr11 96362859 96362932 -52420540 - MIR SINE MIR -66 142 77 1587 185 0 17 chr11 96363220 96363518 -52419954 + AluJo SINE Alu 1 293 -19 31 26 0 0 chr11 96363779 96363817 -52419655 + AT_rich Low_complexity Low_complexity 1 38 0 338 270 62 11 chr11 96363840 96364018 -52419454 + L1ME4a LINE L1 5935 6121 0 495 185 87 0 chr11 96364401 96364493 -52418979 + MER8 DNA MER2_type 23 122 -117 819 57 0 0 chr11 96364505 96364611 -52418861 - L1PA5 LINE L1 -1 6153 6048 1021 45 0 0 chr11 96364611 96364744 -52418728 + L1PA5 LINE L1 5919 6051 -103 793 190 0 0 chr11 96365530 96365672 -52417800 - FRAM SINE Alu -13 163 22 415 211 0 0 chr11 96365737 96365813 -52417659 - Tigger2 DNA MER2_type -2642 76 1 185 229 57 0 chr11 96366244 96366279 -52417193 - L2 LINE L2 -94 3219 3183 498 275 69 32 chr11 96366481 96366670 -52416802 - MIR SINE MIR -2 260 65 264 307 62 46 chr11 96367592 96367980 -52415492 - L1ME4a LINE L1 -206 5915 5522 22 35 0 0 chr11 96368181 96368210 -52415262 + AT_rich Low_complexity Low_complexity 1 29 0 413 116 63 63 chr11 96369172 96369267 -52414205 + L1PA8 LINE L1 6078 6172 0 480 139 0 0 chr11 96369322 96369401 -52414071 + (TA)n Simple_repeat Simple_repeat 1 79 0 22 0 0 0 chr11 96369606 96369628 -52413844 + AT_rich Low_complexity Low_complexity 1 22 0 265 88 0 0 chr11 96371886 96371920 -52411552 + U2 snRNA snRNA 1 34 -154 32 43 0 0 chr11 96371989 96372035 -52411437 + AT_rich Low_complexity Low_complexity 1 46 0 345 263 116 68 chr11 96372294 96372484 -52410988 - MER63 DNA MER1_type -1 1060 11 316 213 101 15 chr11 96373791 96373936 -52409536 - L1 LINE L1 -3686 2460 2310 1793 245 67 26 chr11 96374128 96374546 -52408926 - L1ME LINE L1 -343 5823 5424 1686 183 7 3 chr11 96374546 96374841 -52408631 - AluJo SINE Alu -16 296 1 1793 245 67 26 chr11 96374841 96375441 -52408031 - L1ME LINE L1 -742 5424 4768 22 0 0 0 chr11 96375724 96375746 -52407726 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr11 96376144 96376168 -52407304 + AT_rich Low_complexity Low_complexity 1 24 0 381 325 33 20 chr11 96376187 96376338 -52407134 + MIR SINE MIR 14 166 -96 264 208 69 14 chr11 96376371 96376443 -52407029 + HAL1 LINE L1 630 705 -1802 490 225 72 7 chr11 96376452 96376590 -52406882 + MER31B LTR ERV1 320 466 0 227 275 54 77 chr11 96376590 96376812 -52406660 + HAL1 LINE L1 2291 2507 0 2364 122 19 8 chr11 96376887 96377247 -52406225 + THE1B LTR MaLR 1 364 0 194 388 124 16 chr11 96377373 96377502 -52405970 - L2 LINE L2 -830 2484 2342 1258 161 0 64 chr11 96378387 96378419 -52405053 + MER46A DNA MER2_type 3 35 -2696 389 108 0 0 chr11 96378419 96378484 -52404988 + L1MA1 LINE L1 6237 6301 -1 1258 161 0 64 chr11 96378484 96378700 -52404772 + MER46A DNA MER2_type 35 235 -1 16618 206 39 57 chr11 96379505 96380905 -52402567 - L1PA12 LINE L1 -1352 6232 4808 924 163 58 0 chr11 96380905 96381077 -52402395 - AluY SINE Alu 0 311 130 16618 206 39 57 chr11 96381077 96381433 -52402039 - L1PA12 LINE L1 -2776 4808 4447 2274 94 0 0 chr11 96381433 96381731 -52401741 - AluY SINE Alu -13 298 1 16618 206 39 57 chr11 96381731 96383774 -52399698 - L1PA12 LINE L1 -3137 4447 2369 258 32 0 0 chr11 96383774 96383805 -52399667 + (TTTTC)n Simple_repeat Simple_repeat 3 33 0 16618 206 39 57 chr11 96383805 96385064 -52398408 - L1PA12 LINE L1 -5215 2369 1 256 257 69 109 chr11 96385295 96385470 -52398002 + MIR SINE MIR 46 213 -49 242 240 141 49 chr11 96385775 96386018 -52397454 + L2 LINE L2 2686 3006 -307 820 252 13 43 chr11 96386174 96386404 -52397068 + MIR SINE MIR 1 223 -39 560 269 0 8 chr11 96386807 96386972 -52396500 + FLAM_A SINE Alu 1 133 0 230 81 27 0 chr11 96387041 96387078 -52396394 + (TA)n Simple_repeat Simple_repeat 2 39 0 738 280 53 0 chr11 96387117 96387360 -52396112 - MIR SINE MIR 0 262 7 1410 222 13 0 chr11 96387449 96387755 -52395717 + AluJb SINE Alu 1 310 -2 279 202 0 0 chr11 96387770 96387854 -52395618 + A-rich Low_complexity Low_complexity 1 84 0 193 377 57 0 chr11 96388130 96388236 -52395236 - L2 LINE L2 -229 3043 2932 1085 113 0 0 chr11 96388532 96388683 -52394789 - AluSx SINE Alu -157 155 5 362 84 72 12 chr11 96388850 96388933 -52394539 + A-rich Low_complexity Low_complexity 3 90 0 1734 172 0 0 chr11 96390255 96390534 -52392938 + AluSx SINE Alu 1 279 -33 23 0 0 0 chr11 96391076 96391099 -52392373 + AT_rich Low_complexity Low_complexity 1 23 0 381 348 33 43 chr11 96391747 96391957 -52391515 + MIR SINE MIR 16 223 -39 380 304 26 31 chr11 96392326 96392510 -52390962 + MIR SINE MIR 30 206 -56 21 95 0 0 chr11 96393080 96393143 -52390329 + AT_rich Low_complexity Low_complexity 1 63 0 248 218 0 0 chr11 96393197 96393252 -52390220 - MIR SINE MIR -102 160 106 231 335 83 71 chr11 96393832 96394086 -52389386 + L2 LINE L2 2994 3250 -22 1397 215 102 72 chr11 96394586 96395144 -52388328 - LTR48B LTR ERV1 -69 575 1 478 282 127 0 chr11 96395551 96395693 -52387779 - MIR SINE MIR -50 212 53 22 56 0 0 chr11 96396755 96396791 -52386681 + AT_rich Low_complexity Low_complexity 1 36 0 1241 223 30 111 chr11 96396940 96397150 -52386322 + LTR9 LTR ERV1 1 226 -386 2209 91 0 35 chr11 96397150 96397469 -52386003 + AluSp SINE Alu 1 308 -5 1241 223 30 111 chr11 96397469 96397782 -52385690 + LTR9 LTR ERV1 226 482 -130 23 86 0 0 chr11 96398116 96398174 -52385298 + AT_rich Low_complexity Low_complexity 1 58 0 390 365 33 69 chr11 96398336 96398640 -52384832 - L2 LINE L2 -30 3242 2950 1759 223 74 41 chr11 96398739 96399345 -52384127 + L1M4 LINE L1 2692 3317 -2829 269 277 15 0 chr11 96399354 96399419 -52384053 + L2 LINE L2 3204 3269 -3 2264 269 38 26 chr11 96399865 96400663 -52382809 - L1MB7 LINE L1 -10 6174 5368 361 342 13 18 chr11 96400698 96400926 -52382546 + L1 LINE L1 2147 2373 -3773 247 203 25 0 chr11 96401120 96401199 -52382273 + (TA)n Simple_repeat Simple_repeat 1 81 0 330 295 0 0 chr11 96401383 96401461 -52382011 - L1MCc LINE L1 -5523 900 823 473 295 30 34 chr11 96401800 96402037 -52381435 - L1ME3A LINE L1 -275 5895 5660 698 175 0 0 chr11 96402037 96402151 -52381321 + FLAM_C SINE Alu 21 134 -9 557 258 109 27 chr11 96402154 96402410 -52381062 - L1ME3A LINE L1 -502 5660 5384 1989 129 7 13 chr11 96402501 96402803 -52380669 + AluSx SINE Alu 1 300 -12 21 89 0 0 chr11 96403944 96404000 -52379472 + AT_rich Low_complexity Low_complexity 1 56 0 33 73 0 0 chr11 96404105 96404173 -52379299 + AT_rich Low_complexity Low_complexity 1 68 0 261 0 0 0 chr11 96406388 96406417 -52377055 + (TG)n Simple_repeat Simple_repeat 2 30 0 239 290 0 40 chr11 96406417 96406517 -52376955 - L1MC4 LINE L1 -1339 6703 6608 1755 135 68 0 chr11 96407195 96407476 -52375996 - MER1B DNA MER1_type 0 339 40 267 264 0 0 chr11 96407481 96407553 -52375919 - L1ME3A LINE L1 -1228 4918 4847 * 685 188 7 39 chr11 96407552 96407706 -52375766 - L1PA15-16 LINE L1 -5245 1604 1456 * 1536 171 44 4 chr11 96407705 96407979 -52375493 - L1PA15-16 LINE L1 -5330 1519 1235 305 93 0 0 chr11 96408911 96408954 -52374518 - MLT2F LTR ERVL 0 663 621 2523 163 23 0 chr11 96409090 96409526 -52373946 + L1PA16 LINE L1 5613 6058 -108 348 301 156 50 chr11 96409542 96409901 -52373571 + L1M2 LINE L1 779 1175 -5674 815 121 28 14 chr11 96414127 96414268 -52369204 + L1PA16 LINE L1 6021 6163 -3 940 154 0 34 chr11 96415312 96415489 -52367983 + FRAM SINE Alu 3 174 0 1248 263 41 3 chr11 96415959 96416297 -52367175 - LTR16A LTR ERVL -3 447 97 1501 193 39 30 chr11 96416589 96416921 -52366551 - L1 LINE L1 -1852 4294 3960 754 164 0 40 chr11 96416923 96417075 -52366397 + L1 LINE L1 3673 3818 -2328 2285 211 49 59 chr11 96417083 96417148 -52366324 - MLT1E2 LTR MaLR -2 624 560 2184 114 0 7 chr11 96417148 96417446 -52366026 + AluSq SINE Alu 1 296 -17 2285 211 49 59 chr11 96417446 96418010 -52365462 - MLT1E2 LTR MaLR -66 560 1 198 325 51 43 chr11 96418271 96418388 -52365084 + MIR SINE MIR 20 137 -125 200 109 0 65 chr11 96418718 96418764 -52364708 + (TTATA)n Simple_repeat Simple_repeat 5 47 0 369 354 68 7 chr11 96420104 96420251 -52363221 + MIR3 SINE MIR 47 202 -6 275 343 44 7 chr11 96420950 96421087 -52362385 + MIR SINE MIR 14 155 -107 234 272 18 26 chr11 96421191 96421305 -52362167 + A-rich Low_complexity Low_complexity 5 117 0 193 349 23 12 chr11 96421369 96421455 -52362017 + MIR SINE MIR 67 153 -55 240 314 127 48 chr11 96422034 96422225 -52361247 - MIR SINE MIR -51 211 16 252 304 0 52 chr11 96422393 96422508 -52360964 - MIR SINE MIR -121 141 33 263 184 26 0 chr11 96423028 96423104 -52360368 + CT-rich Low_complexity Low_complexity 1 78 0 553 224 75 70 chr11 96424562 96424763 -52358709 - MIR3 SINE MIR -5 203 2 277 222 16 0 chr11 96425169 96425232 -52358240 - L2 LINE L2 -8 3305 3242 28 0 0 0 chr11 96425469 96425497 -52357975 + AT_rich Low_complexity Low_complexity 1 28 0 4353 293 129 17 chr11 96425695 96427985 -52355487 - L2 LINE L2 -8 3305 764 593 121 35 69 chr11 96428965 96429081 -52354391 - L1MA6 LINE L1 -9 6291 6180 1714 158 0 0 chr11 96429192 96429457 -52354015 - AluSx SINE Alu -8 304 40 635 73 21 10 chr11 96429601 96429697 -52353775 + MER9 LTR ERVK 412 508 -3 1866 164 3 10 chr11 96429938 96430250 -52353222 - AluJb SINE Alu -2 310 1 288 0 0 0 chr11 96430974 96431006 -52352466 + (CA)n Simple_repeat Simple_repeat 2 33 0 252 296 14 0 chr11 96431015 96431086 -52352386 - L2 LINE L2 -1379 1935 1864 1652 168 7 7 chr11 96431170 96431461 -52352011 - MER47A DNA MER2_type -74 292 2 34 0 0 0 chr11 96431635 96431669 -52351803 + AT_rich Low_complexity Low_complexity 1 34 0 370 241 35 18 chr11 96431751 96431921 -52351551 + L1ME3A LINE L1 5255 5427 -735 1494 266 61 40 chr11 96431923 96432260 -52351212 + L1ME3A LINE L1 5499 5827 -343 721 265 66 0 chr11 96432260 96432456 -52351016 - MER63A DNA MER1_type 0 210 2 1494 266 61 40 chr11 96432456 96432771 -52350701 + L1ME3A LINE L1 5827 6165 -5 2063 103 14 3 chr11 96432981 96433271 -52350201 + AluSc SINE Alu 1 293 -16 28 0 0 0 chr11 96433304 96433332 -52350140 + AT_rich Low_complexity Low_complexity 1 28 0 320 282 68 17 chr11 96433593 96433710 -52349762 - L1ME2 LINE L1 -2 6162 6040 943 229 14 9 chr11 96433829 96434047 -52349425 + AluJo SINE Alu 1 219 -93 198 0 0 0 chr11 96434067 96434089 -52349383 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 24 0 0 0 chr11 96434159 96434183 -52349289 + AT_rich Low_complexity Low_complexity 1 24 0 696 269 28 59 chr11 96434379 96434703 -52348769 - MER83C LTR ERV1 -11 362 49 255 241 0 0 chr11 96434769 96434827 -52348645 + MIR SINE MIR 97 154 -108 348 271 24 0 chr11 96434899 96434984 -52348488 + MIR SINE MIR 174 260 -2 239 310 17 17 chr11 96434976 96435034 -52348438 + L2 LINE L2 3114 3171 -101 * 248 290 72 65 chr11 96435246 96435384 -52348088 - MIR3 SINE MIR -61 147 9 443 328 69 6 chr11 96435464 96435638 -52347834 + MIR SINE MIR 78 262 0 181 336 195 0 chr11 96435812 96435925 -52347547 + L2 LINE L2 2778 2912 -402 300 238 12 12 chr11 96436295 96436379 -52347093 + CT-rich Low_complexity Low_complexity 3 86 0 348 316 133 6 chr11 96436636 96436794 -52346678 + MIR SINE MIR 49 226 -36 197 317 0 0 chr11 96437205 96437265 -52346207 + L2 LINE L2 3008 3067 -246 200 298 123 18 chr11 96437448 96437562 -52345910 + L2 LINE L2 2713 2838 -476 24 85 0 0 chr11 96437737 96437796 -52345676 + AT_rich Low_complexity Low_complexity 1 59 0 1186 207 159 3 chr11 96438500 96438790 -52344682 - MER58B DNA MER1_type 0 341 7 417 270 102 15 chr11 96438809 96438946 -52344526 + MIR SINE MIR 5 153 -109 2288 119 3 0 chr11 96439145 96439457 -52344015 - AluSp SINE Alu 0 313 1 228 323 0 0 chr11 96439610 96439675 -52343797 + (CA)n Simple_repeat Simple_repeat 2 66 0 345 274 21 11 chr11 96439716 96439811 -52343661 - MER69 DNA AcHobo -1130 96 1 1425 233 152 47 chr11 96439929 96440585 -52342887 - MER50 LTR ERV1 0 734 10 462 18 0 0 chr11 96441469 96441524 -52341948 + (TTA)n Simple_repeat Simple_repeat 1 55 0 603 171 211 0 chr11 96441524 96441647 -52341825 - FRAM SINE Alu -32 144 1 996 175 240 24 chr11 96441774 96442020 -52341452 + AluJo SINE Alu 4 302 0 21 82 0 0 chr11 96442092 96442141 -52341331 + AT_rich Low_complexity Low_complexity 1 49 0 34 55 0 0 chr11 96442850 96442905 -52340567 + AT_rich Low_complexity Low_complexity 1 55 0 24 0 0 0 chr11 96444159 96444183 -52339289 + AT_rich Low_complexity Low_complexity 1 24 0 2131 129 0 3 chr11 96444478 96444787 -52338685 - AluSx SINE Alu -4 308 1 690 206 15 0 chr11 96445502 96445633 -52337839 + FLAM_A SINE Alu 1 133 0 2224 60 0 4 chr11 96445905 96446186 -52337286 - AluYa5 SINE Alu -1 310 31 426 231 253 18 chr11 96446496 96446773 -52336699 - HAL1 LINE L1 -84 2423 2082 385 288 177 20 chr11 96447469 96448056 -52335416 - L1MEd LINE L1 -1994 4135 3457 2096 122 7 0 chr11 96448204 96448498 -52334974 - AluSg SINE Alu -14 296 1 1159 295 37 26 chr11 96448516 96449403 -52334069 - L1MEd LINE L1 -2705 3424 2528 25 0 0 0 chr11 96449596 96449621 -52333851 + AT_rich Low_complexity Low_complexity 1 25 0 261 317 113 14 chr11 96449969 96450111 -52333361 - L1MEd LINE L1 -5455 664 509 1786 113 35 0 chr11 96450231 96450487 -52332985 - AluSg SINE Alu -45 265 1 24 32 0 0 chr11 96450816 96450847 -52332625 + AT_rich Low_complexity Low_complexity 1 31 0 695 269 39 17 chr11 96451750 96451984 -52331488 - L1ME2 LINE L1 -1 6163 5925 1712 136 0 8 chr11 96452409 96452674 -52330798 + AluSx SINE Alu 49 311 -1 1884 66 0 4 chr11 96453049 96453291 -52330181 + AluY SINE Alu 1 241 -70 27 62 0 0 chr11 96453435 96453483 -52329989 + AT_rich Low_complexity Low_complexity 1 48 0 385 86 0 0 chr11 96453483 96453541 -52329931 + AluY SINE Alu 244 301 0 574 235 133 0 chr11 96453660 96453826 -52329646 - MER5A DNA MER1_type -1 188 1 318 217 29 0 chr11 96454639 96454708 -52328764 + Tigger5 DNA MER2_type 9 79 -2244 430 197 0 0 chr11 96454710 96454786 -52328686 - Tigger5 DNA MER2_type -6 2317 2242 272 281 12 12 chr11 96454776 96454858 -52328614 + Tigger5 DNA MER2_type 2242 2323 0 * 717 285 113 8 chr11 96455099 96455355 -52328117 + Charlie2 DNA MER1_type 36 318 -2544 1294 220 105 58 chr11 96455364 96455836 -52327636 + Charlie2 DNA MER1_type 1856 2365 -497 2200 114 3 0 chr11 96455836 96456133 -52327339 - AluSx SINE Alu -14 298 1 1294 220 105 58 chr11 96456133 96456269 -52327203 + Charlie2 DNA MER1_type 2365 2493 -369 1279 296 51 10 chr11 96456280 96456692 -52326780 - LTR16A LTR ERVL -21 429 1 1159 181 79 20 chr11 96456692 96457040 -52326432 + Charlie2 DNA MER1_type 2494 2862 0 544 293 15 67 chr11 96458860 96459130 -52324342 - MER46C DNA MER2_type -12 326 71 430 206 118 22 chr11 96459334 96459470 -52324002 - MIR SINE MIR -86 176 28 2140 252 54 28 chr11 96460346 96461036 -52322436 - L1ME2 LINE L1 -10 6154 5447 1078 311 68 14 chr11 96461403 96461843 -52321629 + LTR16B LTR ERVL 1 464 0 2424 89 0 0 chr11 96462014 96462317 -52321155 - AluSx SINE Alu -9 303 1 344 239 52 52 chr11 96462715 96462945 -52320527 + L1ME4a LINE L1 5707 5936 -185 2243 89 0 17 chr11 96462953 96463255 -52320217 + AluSc SINE Alu 1 297 -12 2865 180 12 7 chr11 96464001 96464810 -52318662 + L1M1 LINE L1 4949 5763 -537 608 214 0 0 chr11 96464826 96464938 -52318534 + FLAM_C SINE Alu 11 122 -21 409 199 19 5 chr11 96464953 96465055 -52318417 + AluJ/FRAM SINE Alu 222 290 -12 374 135 3 16 chr11 96465055 96465136 -52318336 + L1MA1 LINE L1 5794 5874 -294 264 30 0 0 chr11 96465394 96465427 -52318045 + (TG)n Simple_repeat Simple_repeat 2 34 0 2075 119 9 17 chr11 96465819 96466164 -52317308 + L1MA1 LINE L1 5961 6302 0 243 227 227 0 chr11 96466370 96466480 -52316992 + HAL1 LINE L1 2244 2378 -129 617 311 4 29 chr11 96466992 96467236 -52316236 + L2 LINE L2 3076 3313 0 24 53 0 0 chr11 96467247 96467285 -52316187 + AT_rich Low_complexity Low_complexity 1 38 0 3311 122 9 62 chr11 96467549 96468116 -52315356 + LTR8 LTR ERV1 155 691 0 297 358 59 18 chr11 96468403 96468624 -52314848 - L2 LINE L2 -349 2965 2736 894 129 0 0 chr11 96470464 96470588 -52312884 + AluSg/x SINE Alu 165 288 -22 183 42 0 0 chr11 96470591 96470615 -52312857 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1580 147 156 9 chr11 96470617 96470963 -52312509 - MSTB LTR MaLR -29 397 1 884 304 58 40 chr11 96471036 96471763 -52311709 + L1ME3 LINE L1 5255 5994 -168 341 161 0 0 chr11 96472395 96472457 -52311015 + L1PB4 LINE L1 6093 6154 -2 259 262 36 12 chr11 96473395 96473479 -52309993 + L1MC4a LINE L1 6712 6797 -1011 701 186 16 0 chr11 96475742 96475874 -52307598 - L1MA9 LINE L1 -261 6039 5889 27 0 0 0 chr11 96475913 96475940 -52307532 + AT_rich Low_complexity Low_complexity 1 27 0 1996 160 0 3 chr11 96475946 96476284 -52307188 - L1MA9 LINE L1 -408 5904 5568 578 90 11 11 chr11 96476282 96476371 -52307101 + L1MA9 LINE L1 5464 5552 -760 * 309 144 51 0 chr11 96476537 96476655 -52306817 + (TA)n Simple_repeat Simple_repeat 1 124 0 430 217 12 30 chr11 96477193 96477359 -52306113 + (TAA)n Simple_repeat Simple_repeat 2 164 0 21 71 0 0 chr11 96477402 96477444 -52306028 + AT_rich Low_complexity Low_complexity 1 42 0 694 169 8 16 chr11 96477444 96477568 -52305904 + SATR1 Satellite Satellite 188 310 -160 1697 134 18 0 chr11 96477694 96477971 -52305501 - L1PA16 LINE L1 -341 5825 5544 348 94 0 0 chr11 96478413 96478466 -52305006 + (CA)n Simple_repeat Simple_repeat 2 54 0 1071 242 245 21 chr11 96478627 96479351 -52304121 - SATR1 Satellite Satellite -1 886 1 1071 215 309 3 chr11 96479375 96479728 -52303744 - SATR1 Satellite Satellite -2 468 8 952 202 291 20 chr11 96479754 96480352 -52303120 - SATR1 Satellite Satellite -4 760 1 440 247 132 58 chr11 96480401 96480591 -52302881 - SATR1 Satellite Satellite -52 418 215 2387 184 151 30 chr11 96480656 96483400 -52300072 - SATR1 Satellite Satellite -1 3075 1 2060 185 100 5 chr11 96483426 96484104 -52299368 - SATR1 Satellite Satellite -1 742 1 2419 51 0 25 chr11 96484204 96484518 -52298954 - AluYa5 SINE Alu -5 306 1 551 260 44 39 chr11 96485453 96485657 -52297815 - MIR SINE MIR -56 206 2 533 314 53 18 chr11 96487185 96487411 -52296061 - MIR SINE MIR -14 248 15 320 287 111 50 chr11 96489659 96489840 -52293632 - L1ME LINE L1 -327 5794 5603 181 256 0 0 chr11 96490451 96490490 -52292982 - MIR SINE MIR -77 131 93 23 0 0 0 chr11 96491299 96491322 -52292150 + AT_rich Low_complexity Low_complexity 1 23 0 1744 187 100 55 chr11 96491334 96491863 -52291609 - L1ME2 LINE L1 -98 6066 5514 256 255 71 71 chr11 96493369 96493467 -52290005 + MIR SINE MIR 53 150 -112 462 274 87 81 chr11 96493485 96493733 -52289739 + MIR SINE MIR 8 259 -3 2368 87 0 3 chr11 96494081 96494380 -52289092 - AluSx SINE Alu -14 298 1 1581 194 99 58 chr11 96494502 96494987 -52288485 - MLT1D LTR MaLR 0 505 1 923 205 36 34 chr11 96495163 96495456 -52288016 + MLT1A1 LTR MaLR 1 348 -17 22 56 0 0 chr11 96499178 96499214 -52284258 + AT_rich Low_complexity Low_complexity 1 36 0 1972 92 42 7 chr11 96499502 96499785 -52283687 + AluSg SINE Alu 1 293 -17 21 57 0 0 chr11 96499831 96499866 -52283606 + AT_rich Low_complexity Low_complexity 1 35 0 248 294 15 0 chr11 96500920 96500988 -52282484 + MER20B DNA MER1_type 104 172 -611 211 330 89 40 chr11 96502025 96502249 -52281223 + L2 LINE L2 2304 2538 -776 653 256 119 57 chr11 96502455 96502979 -52280493 + L1ME3A LINE L1 5049 5607 -555 768 142 153 34 chr11 96502981 96503157 -52280315 + MER46A DNA MER2_type 1 197 -39 501 257 85 30 chr11 96503164 96503213 -52280259 + L1ME3A LINE L1 5656 5701 -461 2046 103 10 7 chr11 96503213 96503503 -52279969 + AluSq SINE Alu 1 291 -22 501 257 85 30 chr11 96503503 96503778 -52279694 + L1ME3A LINE L1 5701 6002 -160 1007 157 0 54 chr11 96504545 96504730 -52278742 - AluSx SINE Alu -137 175 1 823 229 12 0 chr11 96504764 96504934 -52278538 + FRAM SINE Alu 1 164 -12 283 304 0 0 chr11 96505058 96505127 -52278345 - MER5A DNA MER1_type -6 183 115 35 83 0 0 chr11 96505389 96505473 -52277999 + AT_rich Low_complexity Low_complexity 1 84 0 454 182 0 20 chr11 96505596 96505695 -52277777 + L1MA6 LINE L1 6204 6300 0 227 223 45 18 chr11 96506705 96506817 -52276655 - HAL1 LINE L1 -1384 1123 1009 23 54 0 0 chr11 96506817 96506854 -52276618 + AT_rich Low_complexity Low_complexity 1 37 0 212 0 0 35 chr11 96506889 96506918 -52276554 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 2158 72 0 17 chr11 96506920 96507210 -52276262 - AluSc SINE Alu -24 285 1 551 260 44 39 chr11 96508146 96508350 -52275122 - MIR SINE MIR -56 206 2 533 314 53 18 chr11 96509878 96510104 -52273368 - MIR SINE MIR -14 248 15 343 254 81 96 chr11 96512337 96512534 -52270938 - L1ME LINE L1 -325 5796 5603 181 256 0 0 chr11 96513148 96513187 -52270285 - MIR SINE MIR -77 131 93 23 0 0 0 chr11 96513996 96514019 -52269453 + AT_rich Low_complexity Low_complexity 1 23 0 1744 187 100 55 chr11 96514031 96514560 -52268912 - L1ME2 LINE L1 -98 6066 5514 233 265 71 71 chr11 96516068 96516166 -52267306 + MIR SINE MIR 53 150 -112 349 310 140 12 chr11 96516263 96516434 -52267038 + MIR SINE MIR 67 259 -3 2368 87 0 3 chr11 96516781 96517080 -52266392 - AluSx SINE Alu -14 298 1 1581 194 99 58 chr11 96517202 96517687 -52265785 - MLT1D LTR MaLR 0 505 1 1001 206 34 32 chr11 96517863 96518173 -52265299 + MLT1A1 LTR MaLR 1 365 0 2002 140 104 0 chr11 96518304 96518669 -52264803 + MER57A LTR ERV1 1 403 0 208 154 19 58 chr11 96518669 96518721 -52264751 + (CATA)n Simple_repeat Simple_repeat 2 51 0 4232 14 12 0 chr11 96519259 96519997 -52263475 - L1P1 LINE L1 -529 5626 4884 1197 7 14 0 chr11 96519995 96520134 -52263338 + L1P1 LINE L1 5611 5751 -404 * 593 63 0 0 chr11 96520134 96520213 -52263259 - THE1-int LTR MaLR -1089 491 413 243 0 0 0 chr11 96520363 96520390 -52263082 + (A)n Simple_repeat Simple_repeat 1 27 0 182 309 74 12 chr11 96521075 96521156 -52262316 + L2 LINE L2 3227 3312 -1 381 134 119 0 chr11 96521274 96521341 -52262131 - MSTA LTR MaLR -68 360 286 248 281 90 11 chr11 96521439 96521528 -52261944 - MLT1L LTR MaLR -415 200 105 1120 210 13 51 chr11 96521579 96521949 -52261523 - AluJb SINE Alu 0 358 1 181 118 40 26 chr11 96522902 96522978 -52260494 + (TA)n Simple_repeat Simple_repeat 1 77 0 1395 178 31 8 chr11 96523225 96523484 -52259988 - AluJo SINE Alu -47 265 1 277 266 32 0 chr11 96523531 96523655 -52259817 + (TA)n Simple_repeat Simple_repeat 2 129 0 301 161 12 12 chr11 96523686 96523741 -52259731 + (TA)n Simple_repeat Simple_repeat 2 59 -23 1907 162 27 0 chr11 96523741 96524075 -52259397 + MER2 DNA MER2_type 1 343 -1 301 161 12 12 chr11 96524075 96524100 -52259372 + (TA)n Simple_repeat Simple_repeat 58 82 0 25 83 0 0 chr11 96524234 96524294 -52259178 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr11 96524423 96524444 -52259028 + AT_rich Low_complexity Low_complexity 1 21 0 323 298 79 0 chr11 96524501 96524615 -52258857 - MIR SINE MIR -87 175 53 214 250 248 27 chr11 96524711 96524824 -52258648 - MIR SINE MIR -64 144 38 187 314 29 0 chr11 96524855 96524925 -52258547 + L3 LINE CR1 1087 1158 -419 2178 148 19 3 chr11 96524963 96525322 -52258150 - MER47A DNA MER2_type 0 366 2 804 321 98 3 chr11 96525322 96525609 -52257863 + L3 LINE CR1 1253 1566 -11 21 0 0 0 chr11 96526009 96526030 -52257442 + AT_rich Low_complexity Low_complexity 1 21 0 420 278 0 0 chr11 96526969 96527066 -52256406 - MER5A DNA MER1_type -83 106 10 25 0 0 0 chr11 96527130 96527155 -52256317 + AT_rich Low_complexity Low_complexity 1 25 0 201 129 0 0 chr11 96527525 96527556 -52255916 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 1115 223 51 30 chr11 96527797 96528133 -52255339 + MER2 DNA MER2_type 1 343 -1 374 284 83 12 chr11 96528601 96528770 -52254702 - L2 LINE L2 -1342 1972 1792 270 0 0 0 chr11 96528776 96528806 -52254666 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 264 125 0 0 chr11 96529089 96529129 -52254343 + LTR41 LTR ERVL 733 772 -1 313 393 30 7 chr11 96529487 96529622 -52253850 + L2 LINE L2 3121 3258 -14 540 296 85 28 chr11 96529688 96529935 -52253537 - MIR SINE MIR 0 262 2 2364 78 0 0 chr11 96530186 96530482 -52252990 - AluY SINE Alu -15 296 1 939 135 0 0 chr11 96531119 96531252 -52252220 + AluSq/x SINE Alu 1 133 -180 450 0 0 0 chr11 96531252 96531302 -52252170 + (A)n Simple_repeat Simple_repeat 1 50 0 29 0 0 0 chr11 96531737 96531766 -52251706 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr11 96531800 96531823 -52251649 + AT_rich Low_complexity Low_complexity 1 23 0 537 297 108 5 chr11 96531865 96532050 -52251422 - MIR SINE MIR -6 256 53 644 290 74 52 chr11 96532813 96533179 -52250293 - MLT1L LTR MaLR -205 410 37 723 343 48 28 chr11 96533205 96533337 -52250135 + L2 LINE L2 218 346 -2968 1629 184 3 7 chr11 96533337 96533646 -52249826 - AluSq SINE Alu -5 308 1 723 343 48 28 chr11 96533646 96533971 -52249501 + L2 LINE L2 346 684 -2630 422 229 38 9 chr11 96534233 96534338 -52249134 - Tigger5 DNA MER2_type -1 2322 2215 1366 289 95 44 chr11 96534429 96535517 -52247955 + L1MEc LINE L1 1241 2383 -4013 859 307 25 0 chr11 96535496 96535861 -52247611 + L1MEc LINE L1 2254 2627 -3588 * 3600 245 33 65 chr11 96535908 96536356 -52247116 + L1M4 LINE L1 3860 4321 -1825 689 207 0 0 chr11 96536356 96536477 -52246995 + FLAM_C SINE Alu 2 122 -11 3600 245 33 65 chr11 96536477 96536491 -52246981 + L1M4 LINE L1 4321 4334 -1812 207 0 0 0 chr11 96536491 96536514 -52246958 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3600 245 33 65 chr11 96536514 96537505 -52245967 + L1M4 LINE L1 4334 5268 -878 10363 145 57 19 chr11 96537506 96539353 -52244119 + Tigger2 DNA MER2_type 2 1918 -800 234 0 0 0 chr11 96539353 96539379 -52244093 + (A)n Simple_repeat Simple_repeat 1 26 0 2085 143 0 0 chr11 96539548 96539849 -52243623 - AluSx SINE Alu -11 301 1 4425 120 61 8 chr11 96539981 96540724 -52242748 - L1MA5A LINE L1 -4 6293 5512 441 183 113 26 chr11 96540724 96540839 -52242633 + AluSg/x SINE Alu 166 290 -20 5629 138 23 88 chr11 96540840 96542347 -52241125 - L1MA5A LINE L1 -743 5403 4126 1549 192 0 14 chr11 96542590 96542882 -52240590 + AluJb SINE Alu 1 288 -24 375 60 0 0 chr11 96543019 96543069 -52240403 + (A)n Simple_repeat Simple_repeat 1 50 0 216 0 0 0 chr11 96544690 96544714 -52238758 + (CA)n Simple_repeat Simple_repeat 1 24 0 253 333 0 0 chr11 96544783 96544864 -52238608 - MER91B DNA MER1_type -18 172 92 320 67 0 0 chr11 96544884 96544929 -52238543 - MADE1 DNA Mariner -34 46 2 1887 157 68 0 chr11 96545500 96545838 -52237634 - MER46B DNA MER2_type 0 236 1 205 241 46 11 chr11 96545899 96545986 -52237486 + A-rich Low_complexity Low_complexity 2 91 0 2284 99 3 0 chr11 96546290 96546592 -52236880 - AluSq SINE Alu -10 303 1 186 167 0 0 chr11 96546921 96546957 -52236515 + (TATATG)n Simple_repeat Simple_repeat 6 41 0 254 182 55 18 chr11 96547725 96547780 -52235692 + MIR SINE MIR 108 164 -98 313 288 162 39 chr11 96547867 96548096 -52235376 - L2 LINE L2 -36 3277 3021 240 111 0 0 chr11 96548623 96548659 -52234813 + (TTTC)n Simple_repeat Simple_repeat 2 37 0 373 149 179 0 chr11 96548680 96548747 -52234725 - FRAM/FAM SINE Alu -89 77 1 329 361 63 77 chr11 96549731 96550174 -52233298 + L2 LINE L2 2836 3272 0 250 154 200 0 chr11 96551118 96551183 -52232289 - FLAM_A SINE Alu 0 133 56 355 235 45 76 chr11 96551979 96552111 -52231361 + MER5A DNA MER1_type 7 134 -55 963 191 0 0 chr11 96552112 96552280 -52231192 - AluSg/x SINE Alu -7 303 136 3709 99 96 87 chr11 96552280 96553620 -52229852 - pTR5 LTR ERV1 -6 2432 747 1176 99 0 0 chr11 96553620 96553772 -52229700 - AluSq SINE Alu -159 154 3 830 80 26 0 chr11 96553941 96554054 -52229418 - AluSq/x SINE Alu -194 118 3 2200 103 7 0 chr11 96554066 96554368 -52229104 - AluY SINE Alu -7 304 1 198 118 0 0 chr11 96554600 96554634 -52228838 + (CA)n Simple_repeat Simple_repeat 1 34 0 21 0 0 0 chr11 96555018 96555039 -52228433 + AT_rich Low_complexity Low_complexity 1 21 0 3174 121 9 0 chr11 96555556 96556020 -52227452 + L1PA13 LINE L1 5608 6075 -88 198 133 0 0 chr11 96556223 96556253 -52227219 - MIR SINE MIR -6 256 227 22 35 0 0 chr11 96556305 96556334 -52227138 + AT_rich Low_complexity Low_complexity 1 29 0 186 337 34 22 chr11 96556382 96556471 -52227001 - L2 LINE L2 -249 3023 2934 440 42 99 0 chr11 96556487 96556558 -52226914 + L1PA13 LINE L1 6082 6159 -4 22 56 0 0 chr11 96557653 96557689 -52225783 + AT_rich Low_complexity Low_complexity 1 36 0 246 286 0 0 chr11 96558140 96558203 -52225269 - L1MC4 LINE L1 -150 7892 7830 24 53 0 0 chr11 96558392 96558430 -52225042 + AT_rich Low_complexity Low_complexity 1 38 0 552 252 8 8 chr11 96559371 96559494 -52223978 + L2 LINE L2 3191 3313 0 396 177 68 109 chr11 96559553 96559700 -52223772 + LTR37A LTR ERV1 78 218 -208 361 229 63 111 chr11 96560107 96560378 -52223094 + MER31-int LTR ERV1 1018 1275 -3661 241 331 99 28 chr11 96560551 96560732 -52222740 + L2 LINE L2 2830 3023 -249 2279 92 3 10 chr11 96560944 96561250 -52222222 - AluSp SINE Alu -8 305 2 323 279 273 0 chr11 96561763 96561924 -52221548 - L2 LINE L2 0 3313 3109 600 292 64 0 chr11 96562164 96562335 -52221137 - MIR SINE MIR -11 251 70 258 329 0 0 chr11 96562814 96562899 -52220573 + L1MD3 LINE L1 7901 7985 -10 2145 103 0 0 chr11 96562902 96563192 -52220280 + AluSc SINE Alu 1 290 -19 21 36 0 0 chr11 96563231 96563259 -52220213 + AT_rich Low_complexity Low_complexity 1 28 0 318 170 0 0 chr11 96563565 96563618 -52219854 + L1ME1 LINE L1 44 96 -6300 23 33 0 0 chr11 96563658 96563688 -52219784 + AT_rich Low_complexity Low_complexity 1 30 0 1525 186 76 6 chr11 96563761 96564116 -52219356 + L1ME1 LINE L1 2644 3023 -3192 983 178 5 22 chr11 96564117 96564302 -52219170 + AluJo SINE Alu 86 267 -45 1134 261 25 29 chr11 96564337 96564557 -52218915 + L1ME1 LINE L1 3013 3232 -2983 684 158 7 58 chr11 96564557 96564696 -52218776 + FLAM_C SINE Alu 1 132 -1 1134 261 25 29 chr11 96564696 96564953 -52218519 + L1ME1 LINE L1 3232 3488 -2727 612 158 53 0 chr11 96565059 96565230 -52218242 + (TA)n Simple_repeat Simple_repeat 1 180 0 2748 216 59 106 chr11 96565261 96566559 -52216913 + L1ME1 LINE L1 3534 4771 -1444 1488 225 42 12 chr11 96566581 96566990 -52216482 + L1ME1 LINE L1 5519 5939 -296 287 130 0 19 chr11 96567089 96567143 -52216329 + L1MA9 LINE L1 6177 6229 -83 198 380 42 68 chr11 96567886 96568223 -52215249 + L2 LINE L2 2936 3263 -9 359 330 0 0 chr11 96568293 96568390 -52215082 + L3 LINE CR1 1379 1475 -102 482 280 62 33 chr11 96568448 96568723 -52214749 + L1ME LINE L1 5542 5824 -297 696 297 36 20 chr11 96568730 96568979 -52214493 - MIR SINE MIR -5 257 5 1756 132 24 24 chr11 96569806 96570093 -52213379 - AluSx SINE Alu -25 287 1 2093 116 3 25 chr11 96570322 96570640 -52212832 + AluSp SINE Alu 2 312 -1 212 200 13 40 chr11 96570732 96570807 -52212665 + T-rich Low_complexity Low_complexity 3 75 0 625 367 138 14 chr11 96571301 96572017 -52211455 + L2 LINE L2 2017 2821 -493 322 365 53 12 chr11 96572108 96572278 -52211194 + L2 LINE L2 2910 3086 -186 195 343 96 27 chr11 96572372 96572445 -52211027 + L2 LINE L2 3174 3251 -21 2069 93 0 28 chr11 96573397 96573714 -52209758 + AluSx SINE Alu 1 309 0 1135 224 49 80 chr11 96573724 96574025 -52209447 + L1ME1 LINE L1 5724 6008 -158 706 192 8 0 chr11 96574025 96574155 -52209317 + FLAM_C SINE Alu 1 131 -2 1135 224 49 80 chr11 96574155 96574305 -52209167 + L1ME1 LINE L1 6008 6161 -5 22 0 0 0 chr11 96574446 96574468 -52209004 + AT_rich Low_complexity Low_complexity 1 22 0 1367 137 105 41 chr11 96574468 96574520 -52208952 - L1MA7 LINE L1 -3 6288 6241 189 0 0 0 chr11 96574520 96574541 -52208931 + (TA)n Simple_repeat Simple_repeat 1 21 0 1367 137 105 41 chr11 96574541 96574802 -52208670 - L1MA7 LINE L1 -50 6241 5955 230 102 41 102 chr11 96575647 96575688 -52207784 + MER5B DNA MER1_type 23 62 -116 2356 80 0 3 chr11 96575688 96575989 -52207483 + AluY SINE Alu 1 300 -11 9788 75 8 7 chr11 96576446 96577770 -52205702 - L1P LINE L1 -4804 1342 18 604 56 22 0 chr11 96577770 96577859 -52205613 + L1PA4 LINE L1 6065 6155 0 1103 175 131 4 chr11 96577872 96578146 -52205326 + L1MA9 LINE L1 5879 6187 -125 225 0 0 0 chr11 96578249 96578274 -52205198 + (A)n Simple_repeat Simple_repeat 1 25 0 4591 143 65 1 chr11 96578274 96579031 -52204441 + Tigger2 DNA MER2_type 1913 2717 -1 1591 179 0 53 chr11 96579063 96579182 -52204290 + AluJo SINE Alu 1 125 -187 216 0 0 0 chr11 96579182 96579206 -52204266 + (CAA)n Simple_repeat Simple_repeat 1 24 0 1591 179 0 53 chr11 96579206 96579388 -52204084 + AluJo SINE Alu 125 286 -26 3412 136 32 19 chr11 96579497 96580130 -52203342 - L1MA4 LINE L1 -7 6293 5653 2055 206 98 28 chr11 96580132 96580730 -52202742 + L1ME1 LINE L1 5537 6333 -1 207 282 231 0 chr11 96581695 96581773 -52201699 + L2 LINE L2 3206 3301 -12 252 86 0 0 chr11 96581788 96581823 -52201649 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1885 211 80 53 chr11 96582959 96583586 -52199886 + LTR48B LTR ERV1 1 644 0 21 0 0 0 chr11 96584639 96584660 -52198812 + AT_rich Low_complexity Low_complexity 1 21 0 746 185 8 0 chr11 96585706 96585836 -52197636 - FLAM_C SINE Alu -5 138 8 661 311 134 3 chr11 96586759 96587042 -52196430 + L2 LINE L2 2463 2782 -532 2651 89 14 0 chr11 96587884 96588234 -52195238 + THE1A LTR MaLR 1 355 0 6233 102 0 3 chr11 96588234 96589098 -52194374 + THE1A-int LTR MaLR 1 861 -719 2577 97 8 0 chr11 96589115 96589467 -52194005 + THE1A LTR MaLR 1 355 0 1766 187 9 88 chr11 96589709 96590175 -52193297 + L1MA9 LINE L1 5853 6281 -31 226 253 266 0 chr11 96590865 96590944 -52192528 - LTR67 LTR ERVL -21 536 437 189 0 0 0 chr11 96590944 96590965 -52192507 + (T)n Simple_repeat Simple_repeat 1 21 0 260 254 0 0 chr11 96591228 96591291 -52192181 - LTR67 LTR ERVL -476 81 19 560 189 38 0 chr11 96591483 96591589 -52191883 + MER5A DNA MER1_type 2 111 -78 1013 138 162 121 chr11 96591818 96592108 -52191364 + AluJo SINE Alu 1 302 0 325 279 79 21 chr11 96592172 96592312 -52191160 - ERVL LTR ERVL -362 5402 5255 1991 123 0 0 chr11 96592861 96593138 -52190334 + AluSg SINE Alu 1 277 -33 256 315 11 0 chr11 96593166 96593255 -52190217 - ERVL LTR ERVL -1095 4669 4580 1974 114 0 38 chr11 96593747 96594063 -52189409 + AluY SINE Alu 1 304 -7 546 253 43 21 chr11 96594530 96594716 -52188756 + L1M4 LINE L1 4834 5023 -1123 755 189 50 31 chr11 96594720 96594903 -52188569 + AluJo SINE Alu 126 311 0 986 214 26 46 chr11 96594916 96595219 -52188253 + L1M4 LINE L1 5032 5328 -818 248 186 51 0 chr11 96595215 96595274 -52188198 + L1MD2 LINE L1 6275 6336 -23 * 21 0 0 0 chr11 96595365 96595386 -52188086 + AT_rich Low_complexity Low_complexity 1 21 0 244 286 52 43 chr11 96596865 96597075 -52186397 + HAL1b LINE L1 693 904 -444 308 323 19 49 chr11 96597280 96597546 -52185926 + L1MEc LINE L1 2136 2393 -4003 230 226 36 0 chr11 96598574 96598658 -52184814 + (TA)n Simple_repeat Simple_repeat 2 88 0 920 198 0 0 chr11 96598665 96598827 -52184645 - AluJb SINE Alu -14 298 137 34 0 0 0 chr11 96598944 96598978 -52184494 + AT_rich Low_complexity Low_complexity 1 34 0 2608 179 28 9 chr11 96599300 96599842 -52183630 + L1MA4 LINE L1 4774 5325 -821 688 213 0 0 chr11 96599842 96599964 -52183508 + FRAM SINE Alu 33 154 -22 3940 159 4 34 chr11 96599998 96600726 -52182746 + L1MA4 LINE L1 5317 6022 -278 29 60 0 0 chr11 96600780 96600830 -52182642 + AT_rich Low_complexity Low_complexity 1 50 0 5446 35 38 0 chr11 96600888 96601549 -52181923 - L1PA4 LINE L1 -1 6154 5469 1707 30 0 0 chr11 96601549 96601781 -52181691 + L1PA4 LINE L1 5236 5467 -688 1830 264 70 37 chr11 96601783 96602373 -52181099 - MLT1E2 LTR MaLR 0 626 18 225 287 23 23 chr11 96602454 96602541 -52180931 - L1M4 LINE L1 -603 5581 5495 273 304 7 81 chr11 96602604 96602752 -52180720 - L2 LINE L2 -1 3312 3176 2342 57 13 25 chr11 96603250 96603565 -52179907 + AluY SINE Alu 1 311 0 2182 210 54 12 chr11 96603765 96604400 -52179072 - L1ME LINE L1 -370 5796 5135 45 0 0 0 chr11 96604400 96604445 -52179027 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr11 96604485 96604506 -52178966 + AT_rich Low_complexity Low_complexity 1 21 0 815 188 107 28 chr11 96604570 96604872 -52178600 - LTR48 LTR ERV1 -1 786 409 1443 193 22 39 chr11 96604974 96605285 -52178187 - AluJb SINE Alu -5 307 2 195 42 0 0 chr11 96605368 96605392 -52178080 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 556 246 0 16 chr11 96605407 96605529 -52177943 - FLAM_A SINE Alu -13 120 1 34 24 0 0 chr11 96605571 96605612 -52177860 + AT_rich Low_complexity Low_complexity 1 41 0 201 39 0 0 chr11 96605711 96605737 -52177735 + (CA)n Simple_repeat Simple_repeat 2 27 0 414 200 32 0 chr11 96606119 96606214 -52177258 - MER115 DNA AcHobo -8 685 588 397 128 0 77 chr11 96606289 96606367 -52177105 - MER115 DNA AcHobo -114 579 508 634 177 177 0 chr11 96607151 96607298 -52176174 - MSTA LTR MaLR 0 428 256 360 148 0 0 chr11 96607425 96607486 -52175986 + (CA)n Simple_repeat Simple_repeat 2 62 0 579 292 61 59 chr11 96608078 96608469 -52175003 - L1M4b LINE L1 -5923 936 545 333 261 0 0 chr11 96608662 96608727 -52174745 + FRAM/FAM SINE Alu 1 65 -110 188 284 23 23 chr11 96608737 96608825 -52174647 + MIR SINE MIR 175 262 0 1525 194 9 34 chr11 96609001 96609321 -52174151 + AluJb SINE Alu 1 312 0 1771 169 9 37 chr11 96609717 96610066 -52173406 - MER2 DNA MER2_type 0 345 7 270 416 65 25 chr11 96610573 96610895 -52172577 - L2 LINE L2 0 3272 2938 23 0 0 0 chr11 96611507 96611530 -52171942 + AT_rich Low_complexity Low_complexity 1 23 0 314 242 40 13 chr11 96612436 96612585 -52170887 + (TA)n Simple_repeat Simple_repeat 1 153 0 1584 176 3 3 chr11 96612612 96612896 -52170576 - AluSx SINE Alu -22 290 7 255 133 0 0 chr11 96614416 96614461 -52169011 + (CA)n Simple_repeat Simple_repeat 2 46 0 22 35 0 0 chr11 96614572 96614601 -52168871 + AT_rich Low_complexity Low_complexity 1 29 0 2049 154 0 0 chr11 96614781 96615087 -52168385 - AluSx SINE Alu -6 306 1 43721 33 21 2 chr11 96615292 96621327 -52162145 + L1PA2 LINE L1 2 6155 0 2194 73 42 7 chr11 96621645 96621933 -52161539 + AluY SINE Alu 1 298 -13 1026 194 77 143 chr11 96622029 96622458 -52161014 + MLT2B1 LTR ERVL 113 515 0 26 111 0 0 chr11 96622463 96622580 -52160892 + AT_rich Low_complexity Low_complexity 1 117 0 209 222 0 0 chr11 96623826 96623871 -52159601 + A-rich Low_complexity Low_complexity 1 45 0 2112 127 0 16 chr11 96625778 96626093 -52157379 - AluSq SINE Alu -1 312 3 26 50 0 0 chr11 96626823 96626863 -52156609 + AT_rich Low_complexity Low_complexity 1 40 0 22 56 0 0 chr11 96626904 96626940 -52156532 + AT_rich Low_complexity Low_complexity 1 36 0 27 0 0 0 chr11 96627230 96627257 -52156215 + AT_rich Low_complexity Low_complexity 1 27 0 1265 248 73 60 chr11 96627476 96627927 -52155545 + MLT1C LTR MaLR 9 465 -2 723 174 22 58 chr11 96628028 96628166 -52155306 + FLAM_C SINE Alu 1 133 0 1004 119 11 0 chr11 96628175 96628351 -52155121 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 1543 166 35 38 chr11 96628376 96628666 -52154806 + AluJb SINE Alu 1 289 -23 2208 99 3 0 chr11 96628902 96629217 -52154255 + AluSc SINE Alu 1 316 0 28 61 0 0 chr11 96629252 96629301 -52154171 + AT_rich Low_complexity Low_complexity 1 49 0 472 182 0 20 chr11 96630411 96630510 -52152962 - L1MA6 LINE L1 0 6300 6204 35 83 0 0 chr11 96630633 96630717 -52152755 + AT_rich Low_complexity Low_complexity 1 84 0 278 304 0 0 chr11 96630979 96631048 -52152424 + MER5A DNA MER1_type 115 183 -6 1241 203 9 89 chr11 96631172 96631376 -52152096 - AluJo SINE Alu -12 300 130 2067 133 0 31 chr11 96631376 96631698 -52151774 + AluSx SINE Alu 1 312 0 1241 203 9 89 chr11 96631698 96631819 -52151653 - AluJo SINE Alu -182 130 1 1824 116 80 0 chr11 96632919 96633194 -52150278 - AluSx SINE Alu -15 297 1 2244 112 10 0 chr11 96633561 96633865 -52149607 - AluSg SINE Alu -2 308 2 1731 149 0 15 chr11 96633871 96634139 -52149333 - AluSx SINE Alu -10 302 39 457 218 0 11 chr11 96635354 96635441 -52148031 + AluS SINE Alu 2 87 -226 772 220 0 0 chr11 96635454 96635595 -52147877 + FLAM_C SINE Alu 3 143 0 987 136 0 0 chr11 96636685 96636832 -52146640 - AluSc SINE Alu -8 301 155 625 269 27 0 chr11 96637012 96637161 -52146311 + Tigger3(Golem) DNA MER2_type 2876 3028 -1 208 232 18 0 chr11 96639696 96639752 -52143720 + (CA)n Simple_repeat Simple_repeat 2 58 0 1799 144 11 7 chr11 96639930 96640242 -52143230 + AluSx SINE Alu 5 317 0 181 305 20 117 chr11 96641507 96641607 -52141865 + L2 LINE L2 2977 3050 -263 2328 76 0 35 chr11 96641607 96641922 -52141550 + AluY SINE Alu 1 304 -7 181 305 20 117 chr11 96641922 96642018 -52141454 + L2 LINE L2 3050 3154 -159 1114 241 35 11 chr11 96642021 96642307 -52141165 - AluJb SINE Alu -14 298 6 2130 173 36 67 chr11 96643016 96643461 -52140011 + Tigger2a DNA MER2_type 3 433 -1 1677 131 0 0 chr11 96644009 96644245 -52139227 + AluSx SINE Alu 56 291 -21 39 38 0 0 chr11 96644246 96644299 -52139173 + AT_rich Low_complexity Low_complexity 1 53 0 1989 139 3 0 chr11 96644702 96644996 -52138476 + AluSx SINE Alu 1 295 -17 1989 142 0 3 chr11 96645045 96645347 -52138125 - AluSg SINE Alu -9 301 1 1789 170 6 6 chr11 96646140 96646452 -52137020 + AluSx SINE Alu 1 312 0 21 57 0 0 chr11 96646756 96646791 -52136681 + AT_rich Low_complexity Low_complexity 1 35 0 1105 230 57 48 chr11 96647220 96647310 -52136162 - MER2 DNA MER2_type -10 335 247 2027 142 0 0 chr11 96647310 96647599 -52135873 - AluY SINE Alu -22 289 1 1105 230 57 48 chr11 96647599 96647839 -52135633 - MER2 DNA MER2_type -98 247 2 21 36 0 0 chr11 96650717 96650745 -52132727 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr11 96653576 96653608 -52129864 + AT_rich Low_complexity Low_complexity 1 32 0 609 293 91 7 chr11 96653648 96653955 -52129517 - L1MB7 LINE L1 -11 6173 5841 2582 46 0 7 chr11 96654761 96655067 -52128405 + AluY SINE Alu 1 304 -7 258 330 74 28 chr11 96655229 96655444 -52128028 - MLT1J LTR MaLR -176 335 111 643 180 0 36 chr11 96656468 96656579 -52126893 + AluSg/x SINE Alu 175 281 -29 213 39 0 0 chr11 96656582 96656608 -52126864 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 502 258 8 0 chr11 96657856 96657984 -52125488 - MER5A DNA MER1_type -55 134 6 1921 96 54 11 chr11 96659437 96659717 -52123755 + AluSp SINE Alu 1 292 -21 42184 65 5 1 chr11 96661119 96667234 -52116238 + L1PA5 LINE L1 11 6152 -2 22 35 0 0 chr11 96667494 96667523 -52115949 + AT_rich Low_complexity Low_complexity 1 29 0 1190 225 14 14 chr11 96667578 96667871 -52115601 - AluJo SINE Alu -7 295 3 493 306 112 16 chr11 96668056 96668601 -52114871 - L1ME1 LINE L1 -303 5863 5267 2429 54 0 0 chr11 96671799 96672095 -52111377 + AluY SINE Alu 1 296 -15 309 378 88 0 chr11 96673697 96673890 -52109582 + L2 LINE L2 2756 2965 -349 471 157 0 0 chr11 96673896 96673985 -52109487 + (CATA)n Simple_repeat Simple_repeat 2 90 0 321 356 30 63 chr11 96674021 96674352 -52109120 + L2 LINE L2 2994 3313 0 444 99 33 55 chr11 96676287 96676378 -52107094 + L1PA10 LINE L1 6077 6165 -3 987 230 21 21 chr11 96676615 96676854 -52106618 + MLT2B3 LTR ERVL 1 239 -315 479 306 0 42 chr11 96676841 96676985 -52106487 + MLT2B3 LTR ERVL 370 507 -47 * 1614 161 37 28 chr11 96676993 96677044 -52106428 - MER7A DNA MER2_type -2693 345 296 1832 160 3 10 chr11 96677044 96677357 -52106115 - AluSx SINE Alu -1 311 1 1614 161 37 28 chr11 96677357 96677628 -52105844 - MER7A DNA MER2_type -2742 296 22 297 106 99 4 chr11 96677629 96677699 -52105773 + MLT2B1 LTR ERVL 440 520 0 202 229 29 29 chr11 96678135 96678205 -52105267 + (CATATA)n Simple_repeat Simple_repeat 2 71 0 1120 231 67 25 chr11 96678890 96679172 -52104300 - AluJo SINE Alu -7 295 2 364 265 29 10 chr11 96679402 96679504 -52103968 + MER82 DNA MER2_type 549 652 -1 21 0 0 0 chr11 96679544 96679565 -52103907 + AT_rich Low_complexity Low_complexity 1 21 0 343 162 8 120 chr11 96679681 96679798 -52103674 - MLT2F LTR ERVL -4 659 556 396 274 78 13 chr11 96679957 96680110 -52103362 - MLT1E3 LTR MaLR -416 208 46 24 0 0 0 chr11 96681137 96681161 -52102311 + AT_rich Low_complexity Low_complexity 1 24 0 2267 60 0 14 chr11 96681633 96681918 -52101554 - AluY SINE Alu -28 283 3 1427 219 20 0 chr11 96682253 96682559 -52100913 - AluJo SINE Alu 0 312 1 1131 175 27 0 chr11 96683125 96683348 -52100124 - Tigger4(Zombi) DNA MER2_type 0 2731 2503 1078 222 115 4 chr11 96683342 96683594 -52099878 - Tigger4(Zombi) DNA MER2_type -2451 280 1 * 21 0 0 0 chr11 96683997 96684018 -52099454 + AT_rich Low_complexity Low_complexity 1 21 0 1554 191 29 0 chr11 96684957 96685265 -52098207 + AluSx SINE Alu 3 318 0 1322 109 177 14 chr11 96685414 96685634 -52097838 + AluSq SINE Alu 5 260 -53 21 0 0 0 chr11 96685937 96685958 -52097514 + AT_rich Low_complexity Low_complexity 1 21 0 1083 227 57 0 chr11 96686195 96686459 -52097013 + AluJb SINE Alu 12 290 -22 351 139 109 0 chr11 96686462 96686563 -52096909 + Charlie5 DNA MER1_type 2394 2505 -107 352 278 24 24 chr11 96686649 96686775 -52096697 + L1M4 LINE L1 2920 3045 -3101 347 313 83 23 chr11 96686788 96687305 -52096167 + L1M4 LINE L1 3087 3634 -2512 1099 240 30 20 chr11 96687312 96687612 -52095860 - AluJo SINE Alu 0 312 10 254 326 82 52 chr11 96688121 96688354 -52095118 + L2 LINE L2 2807 3046 -226 1272 216 4 14 chr11 96689306 96689584 -52093888 - AluJo SINE Alu -15 297 23 2535 222 2 24 chr11 96689787 96690408 -52093064 - L1 LINE L1 -801 5345 4739 41340 64 5 1 chr11 96694549 96700664 -52082808 + L1PA5 LINE L1 11 6150 -4 22 35 0 0 chr11 96700924 96700953 -52082519 + AT_rich Low_complexity Low_complexity 1 29 0 1183 219 17 14 chr11 96701008 96701300 -52082172 - AluJo SINE Alu -7 295 3 408 297 108 17 chr11 96701485 96702028 -52081444 - L1ME3A LINE L1 -304 5866 5267 2395 58 0 0 chr11 96705226 96705521 -52077951 + AluY SINE Alu 1 295 -16 305 378 88 0 chr11 96707123 96707316 -52076156 + L2 LINE L2 2756 2965 -349 399 173 0 0 chr11 96707322 96707403 -52076069 + (CATA)n Simple_repeat Simple_repeat 2 82 0 306 360 30 63 chr11 96707439 96707770 -52075702 + L2 LINE L2 2994 3313 0 434 110 33 55 chr11 96709705 96709796 -52073676 + L1PA10 LINE L1 6077 6165 -3 987 230 21 21 chr11 96710032 96710271 -52073201 + MLT2B3 LTR ERVL 1 239 -315 507 299 0 42 chr11 96710258 96710402 -52073070 + MLT2B3 LTR ERVL 370 507 -47 * 1637 158 37 28 chr11 96710410 96710461 -52073011 - MER7A DNA MER2_type -2693 345 296 1872 156 3 10 chr11 96710461 96710775 -52072697 - AluSx SINE Alu 0 312 1 1637 158 37 28 chr11 96710775 96711046 -52072426 - MER7A DNA MER2_type -2742 296 22 297 106 99 4 chr11 96711047 96711117 -52072355 + MLT2B1 LTR ERVL 440 520 0 202 229 29 29 chr11 96711553 96711623 -52071849 + (CATATA)n Simple_repeat Simple_repeat 2 71 0 1086 238 67 25 chr11 96712308 96712590 -52070882 - AluJo SINE Alu -7 295 2 364 265 29 10 chr11 96712820 96712922 -52070550 + MER82 DNA MER2_type 549 652 -1 21 0 0 0 chr11 96712962 96712983 -52070489 + AT_rich Low_complexity Low_complexity 1 21 0 327 171 8 120 chr11 96713099 96713216 -52070256 - MLT2F LTR ERVL -4 659 556 381 281 78 13 chr11 96713375 96713528 -52069944 - MLT1E3 LTR MaLR -416 208 46 24 0 0 0 chr11 96714555 96714579 -52068893 + AT_rich Low_complexity Low_complexity 1 24 0 2190 70 0 14 chr11 96715053 96715338 -52068134 - AluY SINE Alu -28 283 3 1427 219 20 0 chr11 96715673 96715979 -52067493 - AluJo SINE Alu 0 312 1 238 330 82 52 chr11 96716629 96716862 -52066610 + L2 LINE L2 2807 3046 -226 1215 223 4 14 chr11 96717814 96718092 -52065380 - AluJo SINE Alu -15 297 23 2516 224 2 24 chr11 96718295 96718916 -52064556 - L1 LINE L1 -801 5345 4739 2029 182 48 32 chr11 96722589 96723028 -52060444 - Tigger2 DNA MER2_type -6 2712 2267 405 162 0 0 chr11 96723012 96723080 -52060392 - Tigger2 DNA MER2_type -2649 69 2 * 2253 8 0 4 chr11 96723297 96723555 -52059917 - L1PA2 LINE L1 -4 6151 5895 5435 20 0 50 chr11 96723555 96724466 -52059006 + L1P1 LINE L1 4711 5564 -591 1762 127 52 0 chr11 96725655 96725942 -52057530 + AluSx SINE Alu 1 301 0 488 265 15 40 chr11 96727044 96727244 -52056228 - L1MB7 LINE L1 -93 6091 5897 222 150 0 0 chr11 96727463 96727503 -52055969 + (TTC)n Simple_repeat Simple_repeat 3 42 0 1631 148 57 13 chr11 96727514 96727812 -52055660 - AluSx SINE Alu -1 311 1 4557 99 121 15 chr11 96728920 96729321 -52054151 + L1PA6 LINE L1 5340 5697 -457 2212 84 13 26 chr11 96729321 96729630 -52053842 + AluY SINE Alu 1 305 -6 4557 99 121 15 chr11 96729630 96729965 -52053507 + L1PA6 LINE L1 5697 6154 0 1308 164 47 53 chr11 96730581 96730981 -52052491 + L1MA5A LINE L1 5936 6297 0 303 104 0 0 chr11 96732123 96732171 -52051301 + (TG)n Simple_repeat Simple_repeat 2 49 0 268 266 28 85 chr11 96732186 96732363 -52051109 - L1MEc LINE L1 -4715 1681 1515 237 266 9 64 chr11 96732370 96732479 -52050993 + CT-rich Low_complexity Low_complexity 2 104 0 449 76 0 130 chr11 96732500 96732550 -52050922 - MADE1 DNA Mariner 0 80 46 2082 141 0 3 chr11 96732550 96732863 -52050609 + AluSx SINE Alu 1 312 0 449 76 0 130 chr11 96732863 96732904 -52050568 - MADE1 DNA Mariner -34 46 1 25 31 0 0 chr11 96733097 96733129 -52050343 + AT_rich Low_complexity Low_complexity 1 32 0 589 284 51 34 chr11 96733129 96733485 -52049987 - L1MEc LINE L1 -5451 945 584 436 262 18 30 chr11 96734140 96734303 -52049169 - MER115 DNA AcHobo -33 660 500 2331 168 153 17 chr11 96734303 96734834 -52048638 - LTR26 LTR ERV1 0 603 1 589 191 0 0 chr11 96736246 96736356 -52047116 - MER46A DNA MER2_type -1 235 126 353 205 0 131 chr11 96736423 96736509 -52046963 - MER46A DNA MER2_type -130 106 39 428 92 0 0 chr11 96736509 96736574 -52046898 - L1MA1 LINE L1 0 6302 6238 353 205 0 131 chr11 96736574 96736609 -52046863 - MER46A DNA MER2_type -197 39 1 1138 235 0 12 chr11 96737759 96738002 -52045470 + AluJo SINE Alu 57 296 -16 2062 109 3 3 chr11 96738608 96738922 -52044550 - AluSx SINE Alu 0 314 1 198 265 20 0 chr11 96739374 96739423 -52044049 - L2 LINE L2 -665 2649 2600 558 135 21 10 chr11 96739664 96739760 -52043712 - Tigger7 DNA MER2_type -273 2214 2118 2906 202 88 23 chr11 96739762 96740466 -52043006 - Tigger7 DNA MER2_type -1719 768 19 331 123 49 19 chr11 96740502 96740664 -52042808 + (TTATA)n Simple_repeat Simple_repeat 5 171 0 22 0 0 0 chr11 96741057 96741079 -52042393 + AT_rich Low_complexity Low_complexity 1 22 0 1206 212 8 19 chr11 96741257 96741516 -52041956 + AluJo SINE Alu 11 266 -46 188 227 0 23 chr11 96742575 96742619 -52040853 + L3b LINE CR1 1530 1572 -11 290 189 40 14 chr11 96742704 96742778 -52040694 - MLT2B1 LTR ERVL 0 520 445 1796 149 31 16 chr11 96742779 96743047 -52040425 + MER7A DNA MER2_type 22 295 -2743 1731 169 0 41 chr11 96743047 96743361 -52040111 + AluSx SINE Alu 1 301 -11 1796 149 31 16 chr11 96743361 96743413 -52040059 + MER7A DNA MER2_type 295 345 -1 566 291 0 0 chr11 96743420 96743554 -52039918 - MLT2B3 LTR ERVL -46 508 375 * 1055 212 21 21 chr11 96743550 96743791 -52039681 - MLT2B3 LTR ERVL -313 241 1 526 136 0 58 chr11 96744016 96744119 -52039353 - L1PA11 LINE L1 0 6174 6078 525 345 35 77 chr11 96746060 96746427 -52037045 - L2 LINE L2 -9 3304 2959 300 111 0 0 chr11 96746427 96746472 -52037000 + (TG)n Simple_repeat Simple_repeat 1 45 0 525 345 35 77 chr11 96746472 96746668 -52036804 - L2 LINE L2 -354 2959 2756 204 111 0 0 chr11 96748206 96748242 -52035230 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 207 0 0 0 chr11 96750066 96750089 -52033383 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr11 96752076 96752098 -52031374 + AT_rich Low_complexity Low_complexity 1 22 0 602 278 0 0 chr11 96752110 96752236 -52031236 + FRAM SINE Alu 1 118 -58 331 103 17 35 chr11 96753428 96753486 -52029986 - MLT2B1 LTR ERVL 0 520 464 * 1032 200 82 5 chr11 96753480 96753700 -52029772 + Tigger3(Golem) DNA MER2_type 2790 3026 -3 312 351 37 0 chr11 96753710 96753844 -52029628 - MLT2B3 LTR ERVL -46 508 370 * 1044 205 39 13 chr11 96753825 96754054 -52029418 - MLT2B3 LTR ERVL -315 239 5 307 326 58 64 chr11 96756238 96756551 -52026921 - L2 LINE L2 0 3313 3003 347 206 0 26 chr11 96756625 96756780 -52026692 + (TA)n Simple_repeat Simple_repeat 2 152 0 210 408 25 0 chr11 96756780 96756900 -52026572 - L2 LINE L2 -341 2973 2851 339 78 0 0 chr11 96758542 96758593 -52024879 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 21 0 0 0 chr11 96758767 96758788 -52024684 + AT_rich Low_complexity Low_complexity 1 21 0 775 64 0 0 chr11 96759702 96759796 -52023676 + MER4E LTR ERV1 651 744 -22 7180 55 16 12 chr11 96759796 96761391 -52022081 + SVA Other Other 1 1369 -17 25 51 0 0 chr11 96761507 96761546 -52021926 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr11 96762159 96762182 -52021290 + AT_rich Low_complexity Low_complexity 1 23 0 302 279 171 11 chr11 96763273 96763642 -52019830 + L1M4 LINE L1 4915 5342 -804 308 239 29 134 chr11 96763655 96763864 -52019608 - L1M2 LINE L1 -5905 944 758 692 168 0 17 chr11 96765425 96765544 -52017928 - FRAM SINE Alu -22 154 38 1059 174 0 5 chr11 96766453 96766654 -52016818 + L1 LINE L1 4759 4958 -1188 416 260 64 40 chr11 96766659 96766832 -52016640 + MLT1E3 LTR MaLR 46 222 -402 1304 205 0 23 chr11 96767589 96767848 -52015624 + AluJo SINE Alu 1 253 -59 234 267 23 12 chr11 96768563 96768649 -52014823 + (TATG)n Simple_repeat Simple_repeat 2 88 0 185 227 0 23 chr11 96768919 96768963 -52014509 + L3b LINE CR1 1530 1572 -11 268 189 40 14 chr11 96769048 96769122 -52014350 - MLT2B1 LTR ERVL 0 520 445 1571 167 31 16 chr11 96769126 96769391 -52014081 + MER7A DNA MER2_type 25 295 -2743 1927 149 0 26 chr11 96769391 96769700 -52013772 + AluSx SINE Alu 1 301 -11 1571 167 31 16 chr11 96769700 96769752 -52013720 + MER7A DNA MER2_type 295 345 -1 499 299 0 0 chr11 96769759 96769893 -52013579 - MLT2B3 LTR ERVL -46 508 375 * 986 216 21 21 chr11 96769889 96770130 -52013342 - MLT2B3 LTR ERVL -313 241 1 547 117 0 58 chr11 96770358 96770461 -52013011 - L1PA11 LINE L1 0 6174 6078 252 86 0 0 chr11 96771811 96771846 -52011626 + (A)n Simple_repeat Simple_repeat 1 35 0 249 319 15 87 chr11 96772470 96772736 -52010736 - L2 LINE L2 -73 3240 2994 504 122 0 0 chr11 96772771 96772853 -52010619 + (TG)n Simple_repeat Simple_repeat 2 83 0 321 380 23 18 chr11 96772857 96773028 -52010444 - L2 LINE L2 -349 2965 2794 216 67 0 0 chr11 96774611 96774641 -52008831 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 207 0 0 0 chr11 96776475 96776498 -52006974 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 * 351 0 0 0 chr11 96776497 96776536 -52006936 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 460 150 37 12 chr11 96779146 96779400 -52004072 + (TA)n Simple_repeat Simple_repeat 1 260 0 183 259 89 54 chr11 96780005 96780117 -52003355 + L2 LINE L2 366 481 -2833 833 231 25 5 chr11 96782568 96782771 -52000701 + L1PA16 LINE L1 5833 6039 -127 360 268 201 63 chr11 96782773 96783202 -52000270 + L1M2 LINE L1 598 1085 -5764 345 148 49 0 chr11 96785448 96785509 -51997963 + L1PA16 LINE L1 6021 6084 -82 1240 195 15 19 chr11 96785661 96785952 -51997520 - AluJb SINE Alu 0 313 24 251 157 20 0 chr11 96786032 96786083 -51997389 + (TA)n Simple_repeat Simple_repeat 2 53 0 536 268 27 68 chr11 96786673 96786968 -51996504 - L1M4b LINE L1 -5924 935 653 429 152 0 15 chr11 96787256 96787322 -51996150 + AluJ/FLAM SINE Alu 2 66 -246 1593 183 10 16 chr11 96787596 96787907 -51995565 + AluJb SINE Alu 1 309 -3 1599 178 6 48 chr11 96788305 96788659 -51994813 - MER2 DNA MER2_type 0 345 7 247 426 59 25 chr11 96789169 96789493 -51993979 - L2 LINE L2 0 3272 2938 213 39 0 0 chr11 96789791 96789817 -51993655 + (CAAAG)n Simple_repeat Simple_repeat 5 30 0 755 147 16 23 chr11 96792480 96792609 -51990863 + AluSq/x SINE Alu 2 129 -184 183 80 0 0 chr11 96792989 96793014 -51990458 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 305 237 0 0 chr11 96793435 96793494 -51989978 - MER8 DNA MER2_type -158 81 23 1433 208 3 20 chr11 96794360 96794663 -51988809 - AluJo SINE Alu -14 298 1 219 192 26 115 chr11 96794943 96795021 -51988451 + MIR SINE MIR 72 142 -66 1937 136 0 23 chr11 96795214 96795524 -51987948 - AluSg SINE Alu -7 303 1 25 31 0 0 chr11 96796057 96796089 -51987383 + AT_rich Low_complexity Low_complexity 1 32 0 29 0 0 0 chr11 96796396 96796425 -51987047 + AT_rich Low_complexity Low_complexity 1 29 0 294 95 0 0 chr11 96796749 96796791 -51986681 + (TAGA)n Simple_repeat Simple_repeat 2 43 0 624 296 132 23 chr11 96797030 96797509 -51985963 - LTR41 LTR ERVL -242 531 1 232 337 30 0 chr11 96797638 96797739 -51985733 - L1ME LINE L1 -536 5634 5531 1479 196 25 0 chr11 96798054 96798330 -51985142 - AluJb SINE Alu -29 283 1 214 264 0 38 chr11 96798390 96798443 -51985029 + L2 LINE L2 2997 3047 -225 395 32 0 65 chr11 96798522 96798584 -51984888 - L1PA8 LINE L1 -6 6166 6109 853 298 13 4 chr11 96798985 96799223 -51984249 + MIR SINE MIR 20 259 -3 2158 113 0 0 chr11 96800011 96800302 -51983170 + AluSx SINE Alu 1 291 -21 21 82 0 0 chr11 96800307 96800356 -51983116 + AT_rich Low_complexity Low_complexity 1 49 0 2320 75 7 0 chr11 96800735 96801040 -51982432 + AluY SINE Alu 1 307 -4 1894 158 3 19 chr11 96801860 96802177 -51981295 + AluSx SINE Alu 1 312 0 1070 248 30 21 chr11 96802949 96803041 -51980431 - MER2 DNA MER2_type -10 335 245 2267 88 3 0 chr11 96803041 96803336 -51980136 - AluY SINE Alu -15 296 1 1070 248 30 21 chr11 96803336 96803574 -51979898 - MER2 DNA MER2_type -100 245 2 25 0 0 0 chr11 96809304 96809329 -51974143 + AT_rich Low_complexity Low_complexity 1 25 0 487 264 99 16 chr11 96809366 96809682 -51973790 - L1MB7 LINE L1 0 6178 5841 180 433 50 0 chr11 96809958 96810078 -51973394 + L2 LINE L2 3147 3272 0 850 271 80 11 chr11 96812028 96812405 -51971067 + L1MA9 LINE L1 5872 6274 -38 1454 212 10 14 chr11 96812561 96812849 -51970623 + AluJo SINE Alu 1 287 -25 745 175 8 0 chr11 96813419 96813545 -51969927 + AluSq/x SINE Alu 24 150 -162 21 82 0 0 chr11 96813865 96813914 -51969558 + AT_rich Low_complexity Low_complexity 1 49 0 481 277 14 0 chr11 96814743 96814884 -51968588 - MER5A DNA MER1_type -40 149 7 216 67 0 0 chr11 96815443 96815473 -51967999 + (A)n Simple_repeat Simple_repeat 1 30 0 732 184 141 0 chr11 96815851 96816085 -51967387 + L1MEc LINE L1 1949 2215 -4181 2065 257 57 17 chr11 96816109 96817400 -51966072 + L1MEc LINE L1 2153 3474 -2741 650 263 48 10 chr11 96817413 96817464 -51966008 - MER90 LTR ERV1 -13 601 553 2152 132 3 0 chr11 96817464 96817767 -51965705 - AluSx SINE Alu -8 304 1 650 263 48 10 chr11 96817767 96817924 -51965548 - MER90 LTR ERV1 -61 553 385 1298 220 43 92 chr11 96817924 96818038 -51965434 + L1ME1 LINE L1 5612 5730 -436 1927 134 18 0 chr11 96818038 96818315 -51965157 + AluSx SINE Alu 2 283 -29 497 95 0 0 chr11 96818252 96818315 -51965157 + Alu SINE Alu 220 308 0 235 0 0 0 chr11 96818315 96818341 -51965131 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 1298 220 43 92 chr11 96818341 96818652 -51964820 + L1ME1 LINE L1 5729 6005 -161 714 192 8 0 chr11 96818652 96818782 -51964690 + FLAM_C SINE Alu 1 131 -2 1298 220 43 92 chr11 96818782 96818932 -51964540 + L1ME1 LINE L1 6005 6161 -5 22 0 0 0 chr11 96819073 96819095 -51964377 + AT_rich Low_complexity Low_complexity 1 22 0 1367 137 105 41 chr11 96819095 96819147 -51964325 - L1MA7 LINE L1 -3 6288 6241 189 0 0 0 chr11 96819147 96819168 -51964304 + (TA)n Simple_repeat Simple_repeat 1 21 0 1367 137 105 41 chr11 96819168 96819429 -51964043 - L1MA7 LINE L1 -50 6241 5955 229 132 53 0 chr11 96820274 96820312 -51963160 + MER5B DNA MER1_type 23 62 -116 2390 84 0 3 chr11 96820315 96820625 -51962847 + AluY SINE Alu 1 309 -2 1800 116 80 0 chr11 96820992 96821268 -51962204 + AluSx SINE Alu 1 298 -14 430 187 13 0 chr11 96822368 96822443 -51961029 + AluJ/FLAM SINE Alu 1 76 -226 1904 96 54 11 chr11 96822969 96823249 -51960223 + AluSp SINE Alu 1 292 -21 42318 54 5 1 chr11 96824651 96830071 -51953401 + L1P1 LINE L1 11 5449 -706 4522 22 4 11 chr11 96830279 96830827 -51952645 - L1PA3 LINE L1 -1 6154 5611 4317 14 0 0 chr11 96830827 96831625 -51951847 + L1P1 LINE L1 4886 5683 -472 2281 76 7 7 chr11 96831775 96832076 -51951396 - AluY SINE Alu -10 301 1 2833 192 79 9 chr11 96832957 96833681 -51949791 - MER21B LTR ERV1 -3 860 6 2216 105 6 3 chr11 96833834 96834157 -51949315 + LTR64 LTR ERVK 1 324 -234 1807 263 68 59 chr11 96834163 96834745 -51948727 - LTR38 LTR ERV1 0 592 24 1109 148 53 0 chr11 96834741 96834930 -51948542 + LTR64 LTR ERVK 360 558 0 * 529 275 131 38 chr11 96835613 96836217 -51947255 - L1MEd LINE L1 -4864 1255 596 285 323 94 18 chr11 96836813 96837036 -51946436 + HAL1b LINE L1 350 589 -759 1401 237 49 53 chr11 96837363 96837869 -51945603 - MLT1D LTR MaLR -1 504 1 538 249 17 73 chr11 96837908 96838085 -51945387 - MLT1D-int LTR MaLR -52 1319 1153 302 203 0 58 chr11 96838433 96838502 -51944970 + MLT1D LTR MaLR 1 65 -440 3946 264 92 23 chr11 96838506 96839387 -51944085 - L1M4c LINE L1 -4733 1913 1095 198 103 0 0 chr11 96839387 96839416 -51944056 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3946 264 92 23 chr11 96839416 96840245 -51943227 - L1M4c LINE L1 -5551 1095 93 2058 151 84 27 chr11 96840376 96840779 -51942693 + MSTB LTR MaLR 1 426 0 8132 196 32 7 chr11 96840779 96842390 -51941082 + MSTB-int LTR MaLR 1 1651 0 2091 146 109 8 chr11 96842392 96842777 -51940695 + MSTB LTR MaLR 3 426 0 193 410 60 0 chr11 96843006 96843123 -51940349 + L2 LINE L2 3133 3256 -16 25 51 0 0 chr11 96843124 96843163 -51940309 + AT_rich Low_complexity Low_complexity 1 39 0 273 280 168 0 chr11 96843344 96843451 -51940021 - MIR SINE MIR -41 221 97 234 279 57 57 chr11 96843534 96843763 -51939709 + L1M4 LINE L1 2175 2403 -3743 31 0 0 0 chr11 96844154 96844185 -51939287 + AT_rich Low_complexity Low_complexity 1 31 0 2103 133 0 7 chr11 96844185 96844479 -51938993 - AluSp SINE Alu -21 292 1 337 191 79 87 chr11 96844957 96845083 -51938389 + L1ME4a LINE L1 5969 6093 -28 342 222 156 74 chr11 96845289 96845546 -51937926 + L1ME LINE L1 5526 5803 -318 303 288 152 8 chr11 96847437 96847569 -51935903 - MIR SINE MIR -6 256 106 1076 106 32 115 chr11 96849302 96849519 -51933953 + MER30 DNA MER1_type 1 199 -31 1971 115 55 8 chr11 96849654 96850085 -51933387 - MER9 LTR ERVK 0 511 1 2070 135 7 0 chr11 96850200 96850497 -51932975 - AluSx SINE Alu -9 303 5 28 0 0 0 chr11 96850509 96850537 -51932935 + AT_rich Low_complexity Low_complexity 1 28 0 640 157 14 43 chr11 96850623 96850763 -51932709 - SVA Other Other -783 603 468 206 315 76 22 chr11 96851474 96851566 -51931906 + L3b LINE CR1 1486 1582 -1 2068 86 19 0 chr11 96851573 96851842 -51931630 - AluSq SINE Alu -15 298 25 256 143 195 13 chr11 96854673 96854750 -51928722 - MER104 DNA Tc2 -50 130 40 448 299 139 21 chr11 96854780 96854974 -51928498 - MIR SINE MIR 0 262 46 201 286 0 32 chr11 96856057 96856120 -51927352 - L3 LINE CR1 -694 883 823 920 169 85 5 chr11 96856562 96856751 -51926721 + AluJo SINE Alu 1 204 -108 1083 193 109 36 chr11 96856865 96857010 -51926462 - AluJo SINE Alu -17 295 162 1807 163 89 9 chr11 96857010 96857347 -51926125 - THE1B LTR MaLR 0 364 1 1083 193 109 36 chr11 96857347 96857476 -51925996 - AluJo SINE Alu -150 162 1 2718 276 92 30 chr11 96857662 96859014 -51924458 - L1MEc LINE L1 -4920 1476 42 493 288 106 6 chr11 96859063 96859233 -51924239 - LTR16A LTR ERVL 0 450 264 305 229 0 14 chr11 96859406 96859476 -51923996 - Tigger5 DNA MER2_type 0 2323 2255 269 211 0 18 chr11 96859447 96859504 -51923968 - Tigger5 DNA MER2_type -2267 56 1 * 232 276 112 56 chr11 96859540 96859754 -51923718 - L2 LINE L2 -43 3270 3045 562 312 215 20 chr11 96859806 96860413 -51923059 + L2 LINE L2 2586 3313 0 280 338 40 0 chr11 96860457 96860531 -51922941 + L2 LINE L2 3188 3264 -8 2692 229 43 12 chr11 96861898 96862662 -51920810 + L1MC/D LINE L1 3581 4368 -1778 282 179 0 71 chr11 96862678 96862734 -51920738 + FLAM SINE Alu 69 120 -13 694 264 41 4 chr11 96862746 96862992 -51920480 + L1MC/D LINE L1 4367 4621 -1525 404 189 27 0 chr11 96862993 96863067 -51920405 - MER21B LTR ERV1 -44 819 744 363 211 48 10 chr11 96863072 96863176 -51920296 + L1MC/D LINE L1 4638 4745 -1401 * 705 196 37 107 chr11 96863174 96863445 -51920027 + L1MC/D LINE L1 5443 5694 -665 225 305 53 38 chr11 96913970 96914101 -51869371 + L1ME3A LINE L1 3514 3646 -2500 659 291 44 22 chr11 96914151 96914426 -51869046 - L1ME3A LINE L1 -43 6127 5847 214 106 43 0 chr11 96914649 96914696 -51868776 + (TG)n Simple_repeat Simple_repeat 2 50 0 22 56 0 0 chr11 96917854 96917890 -51865582 + AT_rich Low_complexity Low_complexity 1 36 0 1972 92 42 7 chr11 96918178 96918461 -51865011 + AluSg SINE Alu 1 293 -17 21 57 0 0 chr11 96918507 96918542 -51864930 + AT_rich Low_complexity Low_complexity 1 35 0 248 294 15 0 chr11 96919594 96919662 -51863810 + MER20B DNA MER1_type 104 172 -611 211 330 89 40 chr11 96920698 96920922 -51862550 + L2 LINE L2 2304 2538 -776 651 251 121 63 chr11 96921128 96921654 -51861818 + L1ME3A LINE L1 5049 5607 -555 768 142 153 34 chr11 96921656 96921832 -51861640 + MER46A DNA MER2_type 1 197 -39 501 257 88 28 chr11 96921839 96921888 -51861584 + L1ME3A LINE L1 5656 5701 -461 2046 103 10 7 chr11 96921888 96922178 -51861294 + AluSq SINE Alu 1 291 -22 501 257 88 28 chr11 96922178 96922464 -51861008 + L1ME3A LINE L1 5701 6020 -142 236 172 40 101 chr11 96922480 96922579 -51860893 + L1ME3A LINE L1 6078 6170 0 188 161 0 0 chr11 96923037 96923068 -51860404 + L2 LINE L2 2487 2517 -797 307 229 0 14 chr11 96923076 96923146 -51860326 - Tigger5 DNA MER2_type 0 2323 2255 234 276 112 56 chr11 96923210 96923424 -51860048 - L2 LINE L2 -43 3270 3045 563 314 215 20 chr11 96923476 96924083 -51859389 + L2 LINE L2 2586 3313 0 283 338 40 0 chr11 96924127 96924201 -51859271 + L2 LINE L2 3188 3264 -8 1062 193 109 36 chr11 96925747 96925876 -51857596 + AluJo SINE Alu 1 119 -193 1792 163 89 9 chr11 96925876 96926213 -51857259 + THE1B LTR MaLR 1 364 0 1062 193 109 36 chr11 96926213 96926358 -51857114 + AluJo SINE Alu 119 295 -17 903 169 85 5 chr11 96926472 96926661 -51856811 - AluJo SINE Alu -108 204 1 222 279 0 29 chr11 96927103 96927171 -51856301 + L3 LINE CR1 823 888 -689 454 299 139 21 chr11 96928249 96928443 -51855029 + MIR SINE MIR 46 262 0 262 152 190 13 chr11 96928473 96928552 -51854920 + MER104 DNA Tc2 40 132 -48 2057 85 19 0 chr11 96931381 96931652 -51851820 + AluSq SINE Alu 25 300 -13 199 301 75 32 chr11 96931659 96931752 -51851720 - L3b LINE CR1 -1 1582 1486 611 157 14 43 chr11 96932463 96932603 -51850869 + SVA Other Other 468 603 -783 28 0 0 0 chr11 96932689 96932717 -51850755 + AT_rich Low_complexity Low_complexity 1 28 0 2077 131 7 0 chr11 96932728 96933025 -51850447 + AluSx SINE Alu 5 303 -9 1951 115 55 8 chr11 96933140 96933571 -51849901 + MER9 LTR ERVK 1 511 0 1079 106 32 115 chr11 96933706 96933923 -51849549 - MER30 DNA MER1_type -31 199 1 307 288 152 8 chr11 96935656 96935788 -51847684 + MIR SINE MIR 106 256 -6 805 322 91 55 chr11 96936666 96936806 -51846666 - L2 LINE L2 -339 2975 2842 1795 199 88 2 chr11 96936806 96937203 -51846269 - MSTB1 LTR MaLR 0 432 2 805 322 91 55 chr11 96937203 96937587 -51845885 - L2 LINE L2 -472 2842 2432 2576 156 19 5 chr11 96937609 96938031 -51845441 + MSTA LTR MaLR 1 428 0 236 250 0 16 chr11 96938784 96938848 -51844624 + (TTCA)n Simple_repeat Simple_repeat 2 64 0 243 283 54 0 chr11 96939511 96939603 -51843869 + MLT1K LTR MaLR 487 583 -5 228 425 32 0 chr11 96939611 96939705 -51843767 - L2 LINE L2 -230 3042 2946 1141 106 0 6 chr11 96940719 96940889 -51842583 - L1PA14 LINE L1 -6 6155 5987 2149 92 9 19 chr11 96941058 96941373 -51842099 + AluSx SINE Alu 1 312 0 22 70 0 0 chr11 96941718 96941761 -51841711 + AT_rich Low_complexity Low_complexity 1 43 0 216 305 171 9 chr11 96942349 96942454 -51841018 - MIR SINE MIR -67 141 20 628 294 22 17 chr11 96942666 96942947 -51840525 + L1M2 LINE L1 460 1643 -5853 709 215 0 7 chr11 96944305 96944454 -51839018 + L1M2 LINE L1 2309 2456 -5033 * 11537 223 48 11 chr11 96944449 96947880 -51835592 + L1M2 LINE L1 3394 6957 -744 453 316 76 32 chr11 96947880 96948196 -51835276 + L2 LINE L2 1776 2105 -1209 578 128 48 170 chr11 96948285 96948473 -51834999 - MER51A LTR ERV1 0 634 470 234 252 34 25 chr11 96948830 96948949 -51834523 + (TATATG)n Simple_repeat Simple_repeat 4 123 0 1635 160 134 21 chr11 96949054 96949435 -51834037 - MSTA LTR MaLR -2 426 3 326 284 0 21 chr11 96949462 96949557 -51833915 + L2 LINE L2 2197 2289 -1025 204 40 0 0 chr11 96949786 96949811 -51833661 + (T)n Simple_repeat Simple_repeat 1 25 0 180 0 0 0 chr11 96949838 96949858 -51833614 + (G)n Simple_repeat Simple_repeat 1 20 0 356 222 156 74 chr11 96951165 96951422 -51832050 - L1ME LINE L1 -318 5803 5526 346 191 79 87 chr11 96951628 96951754 -51831718 - L1ME4a LINE L1 -28 6093 5969 2062 136 0 7 chr11 96952232 96952526 -51830946 + AluSp SINE Alu 1 292 -21 31 0 0 0 chr11 96952526 96952557 -51830915 + AT_rich Low_complexity Low_complexity 1 31 0 233 289 73 51 chr11 96952862 96953177 -51830295 - L1M4 LINE L1 -3650 2496 2175 279 280 168 0 chr11 96953260 96953367 -51830105 + MIR SINE MIR 97 221 -41 25 51 0 0 chr11 96953548 96953587 -51829885 + AT_rich Low_complexity Low_complexity 1 39 0 196 410 60 0 chr11 96953588 96953705 -51829767 - L2 LINE L2 -16 3256 3133 2068 146 109 8 chr11 96953934 96954319 -51829153 - MSTB LTR MaLR 0 426 3 8074 196 31 7 chr11 96954321 96955934 -51827538 - MSTB-int LTR MaLR 0 1651 1 2039 151 84 27 chr11 96955934 96956337 -51827135 - MSTB LTR MaLR 0 426 1 4172 265 91 22 chr11 96956468 96957298 -51826174 + L1M4 LINE L1 93 864 -5782 198 103 0 0 chr11 96957298 96957327 -51826145 + (CAA)n Simple_repeat Simple_repeat 2 30 0 4172 265 91 22 chr11 96957327 96958208 -51825264 + L1M4 LINE L1 864 1913 -4733 304 203 0 58 chr11 96958212 96958281 -51825191 - MLT1D LTR MaLR -440 65 1 538 255 75 61 chr11 96958629 96958841 -51824631 + MLT1D-int LTR MaLR 1153 1367 -4 1396 237 49 53 chr11 96958845 96959351 -51824121 + MLT1D LTR MaLR 1 504 -1 300 323 94 18 chr11 96959678 96959901 -51823571 - HAL1b LINE L1 -759 589 350 355 292 130 5 chr11 96960497 96960689 -51822783 + L1MEd LINE L1 596 811 -5308 563 258 98 27 chr11 96960757 96961094 -51822378 + L1MEd LINE L1 895 1255 -4864 444 309 0 16 chr11 96961808 96961934 -51821538 - L2 LINE L2 0 3313 3190 2055 66 0 4 chr11 96962882 96963155 -51820317 - AluY SINE Alu -12 299 28 21 0 0 0 chr11 96963257 96963278 -51820194 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr11 96963397 96963426 -51820046 + AT_rich Low_complexity Low_complexity 1 29 0 395 260 13 27 chr11 96963467 96963617 -51819855 + MER114 LTR ERV 501 648 0 227 234 50 7 chr11 96964428 96964569 -51818903 + (TA)n Simple_repeat Simple_repeat 2 148 0 2292 127 25 0 chr11 96964623 96964978 -51818494 + THE1B LTR MaLR 1 364 0 304 328 31 23 chr11 96965245 96965373 -51818099 - HAL1 LINE L1 -2363 144 16 1764 100 75 25 chr11 96965735 96966014 -51817458 - AluSx SINE Alu -19 293 1 289 249 197 47 chr11 96966108 96966321 -51817151 - L1ME3A LINE L1 -30 6140 5896 1024 294 97 13 chr11 96966332 96966866 -51816606 - L1ME3 LINE L1 -217 5945 5367 255 282 122 67 chr11 96966888 96967306 -51816166 - L1ME3 LINE L1 -846 5300 4860 598 317 145 22 chr11 96967330 96967731 -51815741 + LTR16A LTR ERVL 1 450 0 2831 276 91 30 chr11 96967780 96969133 -51814339 + L1MC/D LINE L1 42 1476 -4920 1116 148 53 0 chr11 96969965 96970154 -51813318 - LTR64 LTR ERVK 0 558 360 * 1809 264 68 59 chr11 96970150 96970732 -51812740 + LTR38 LTR ERV1 24 556 0 2216 105 6 3 chr11 96970738 96971061 -51812411 - LTR64 LTR ERVK -234 324 1 2833 192 79 9 chr11 96971214 96971938 -51811534 + MER21B LTR ERV1 6 860 -3 2167 80 7 7 chr11 96972819 96973108 -51810364 + AluY SINE Alu 1 289 -22 201 263 0 0 chr11 96973234 96973291 -51810181 + A-rich Low_complexity Low_complexity 1 57 0 387 270 45 40 chr11 96973309 96973443 -51810029 + L1MC/D LINE L1 1533 1670 -4726 1491 192 10 16 chr11 96973443 96973751 -51809721 + AluJb SINE Alu 1 306 -6 387 270 45 40 chr11 96973751 96973838 -51809634 + L1MC/D LINE L1 1670 1755 -4641 10413 73 7 0 chr11 96973838 96975206 -51808266 - L1P LINE L1 -4752 1394 17 585 67 0 11 chr11 96975206 96975296 -51808176 + L1PA4 LINE L1 6066 6154 -1 1661 168 107 2 chr11 96975307 96975700 -51807772 + L1MA9 LINE L1 5879 6312 0 * 2921 233 43 11 chr11 96975691 96976542 -51806930 + L1MC/D LINE L1 3559 4437 -1778 282 179 0 71 chr11 96976558 96976614 -51806858 + FLAM SINE Alu 69 120 -13 694 264 41 4 chr11 96976626 96976872 -51806600 + L1MC/D LINE L1 4436 4690 -1525 404 189 27 0 chr11 96976873 96976947 -51806525 - MER21B LTR ERV1 -44 819 744 363 211 48 10 chr11 96976952 96977056 -51806416 + L1MC/D LINE L1 4707 4814 -1401 * 689 188 52 122 chr11 96977054 96977325 -51806147 + L1MC/D LINE L1 5512 5763 -665 180 0 0 0 chr11 96977354 96977374 -51806098 + (T)n Simple_repeat Simple_repeat 1 20 0 369 109 0 0 chr11 96977516 96977571 -51805901 + (GGAA)n Simple_repeat Simple_repeat 4 58 0 2516 148 10 2 chr11 96977573 96977973 -51805499 - L1P3 LINE L1 -6055 406 4 207 225 0 0 chr11 96977976 96978016 -51805456 + T-rich Low_complexity Low_complexity 1 40 0 1128 98 12 6 chr11 96978017 96978181 -51805291 - LTR17 LTR ERV1 -455 325 161 2170 110 7 7 chr11 96978979 96979278 -51804194 + AluSx SINE Alu 1 299 -13 1088 104 0 0 chr11 96979341 96979485 -51803987 - L1P LINE L1 -5767 379 236 3011 36 3 0 chr11 96979485 96979847 -51803625 + L1PA4 LINE L1 5788 6150 -5 649 256 70 0 chr11 96981777 96981933 -51801539 - MER58B DNA MER1_type -1 340 174 6188 36 1 4 chr11 96982045 96982798 -51800674 - L1PA4 LINE L1 -43 6112 5362 4286 39 4 0 chr11 96982795 96983330 -51800142 + L1PA4 LINE L1 4830 5366 -780 * 492 344 64 26 chr11 96983472 96983815 -51799657 - L2 LINE L2 0 3313 2958 242 61 30 0 chr11 96983819 96983852 -51799620 + MLT2C1 LTR ERVL 364 397 0 7321 187 22 50 chr11 96983853 96985647 -51797825 - L1MB1 LINE L1 -34 5958 4171 530 189 0 0 chr11 96985647 96985742 -51797730 - FLAM_A SINE Alu -25 117 23 7321 187 22 50 chr11 96985742 96986475 -51796997 - L1MB1 LINE L1 -1821 4171 3419 2067 253 25 31 chr11 96986490 96987147 -51796325 - L1MB1 LINE L1 -5380 511 1 998 308 89 17 chr11 96987153 96987624 -51795848 - L2 LINE L2 -605 2709 2205 905 328 107 3 chr11 96987646 96988012 -51795460 + L1MEc LINE L1 71 474 -5922 250 214 0 0 chr11 96988016 96988058 -51795414 + MLT1F1 LTR MaLR 23 64 -503 1722 203 3 0 chr11 96988058 96988378 -51795094 + L1MD3 LINE L1 7426 7746 -249 2584 142 93 25 chr11 96988378 96988863 -51794609 - Tigger1 DNA MER2_type 0 2418 1901 11217 133 39 21 chr11 96990479 96991569 -51791903 - Tigger1 DNA MER2_type -501 1917 777 3089 50 0 0 chr11 96991569 96991949 -51791523 - L1PA4 LINE L1 0 6155 5776 11217 133 39 21 chr11 96991949 96992741 -51790731 - Tigger1 DNA MER2_type -1641 777 1 656 218 27 50 chr11 96992743 96992810 -51790662 + L1MD3 LINE L1 7759 7826 -169 3511 133 9 6 chr11 96992810 96993335 -51790137 - MER1A DNA MER1_type 0 527 1 656 218 27 50 chr11 96993335 96993487 -51789985 + L1MD3 LINE L1 7826 7973 -22 186 239 22 76 chr11 96994466 96994558 -51788914 + L2 LINE L2 3227 3313 0 222 281 0 0 chr11 96994736 96994800 -51788672 + GA-rich Low_complexity Low_complexity 2 65 0 23 54 0 0 chr11 96994823 96994860 -51788612 + AT_rich Low_complexity Low_complexity 1 37 0 188 254 56 14 chr11 96996011 96996082 -51787390 + L2 LINE L2 3146 3219 -94 233 405 51 19 chr11 96996095 96996253 -51787219 - L2 LINE L2 0 3272 3110 2637 0 0 0 chr11 96996620 96996933 -51786539 - AluYa5 SINE Alu 0 313 1 325 338 33 7 chr11 96996941 96997092 -51786380 - L2 LINE L2 -574 2740 2586 568 347 82 30 chr11 96997116 96997710 -51785762 - L2 LINE L2 -940 2374 1750 229 273 15 15 chr11 96997712 96997778 -51785694 + L2 LINE L2 3244 3309 -4 24 53 0 0 chr11 96998291 96998329 -51785143 + AT_rich Low_complexity Low_complexity 1 38 0 2334 95 0 0 chr11 96998656 96998962 -51784510 + AluY SINE Alu 1 306 -5 7132 133 37 14 chr11 96999540 97000196 -51783276 - HSMAR2 DNA Mariner -4 1298 602 1763 128 169 6 chr11 97000196 97000509 -51782963 + THE1B LTR MaLR 1 364 0 7132 133 37 14 chr11 97000509 97001028 -51782444 - HSMAR2 DNA Mariner -700 602 96 1210 145 6 0 chr11 97001131 97001303 -51782169 - AluSq SINE Alu -138 175 3 329 113 38 0 chr11 97001306 97001359 -51782113 - HSMAR2 DNA Mariner -1247 55 1 22 56 0 19 chr11 97001667 97001702 -51781770 + AT_rich Low_complexity Low_complexity 1 36 -17 2688 142 31 2 chr11 97001702 97002182 -51781290 + L1MB2 LINE L1 5676 6169 -2 22 56 0 19 chr11 97002182 97002200 -51781272 + AT_rich Low_complexity Low_complexity 36 53 0 29995 116 18 57 chr11 97002842 97009247 -51774225 - L1PA7 LINE L1 -5 6149 4 1908 148 11 3 chr11 97010522 97010806 -51772666 - AluSg SINE Alu -24 286 1 2025 113 14 3 chr11 97012159 97012443 -51771029 + AluSg SINE Alu 1 287 -23 14253 40 1 0 chr11 97012446 97014192 -51769280 - L1PA4 LINE L1 -888 5258 3512 6949 35 9 1 chr11 97014196 97015055 -51768417 + L1PA4 LINE L1 5277 6142 -13 308 306 40 55 chr11 97016479 97016678 -51766794 - L2 LINE L2 0 3313 3118 190 294 20 0 chr11 97017203 97017254 -51766218 + L2 LINE L2 3262 3313 0 1455 152 28 11 chr11 97019629 97019912 -51763560 - L1MA9 LINE L1 -14 6298 6011 600 153 18 0 chr11 97020194 97020305 -51763167 - L1MB4 LINE L1 0 6180 6068 1149 153 5 23 chr11 97020345 97020377 -51763095 - L1MB4 LINE L1 -324 5850 5819 1545 186 55 0 chr11 97020377 97020652 -51762820 - AluJb SINE Alu -18 294 5 1149 153 5 23 chr11 97020652 97020834 -51762638 - L1MB4 LINE L1 -355 5819 5640 1642 175 33 0 chr11 97021876 97022150 -51761322 + AluJb SINE Alu 1 303 0 181 0 0 0 chr11 97022150 97022170 -51761302 + (TAAA)n Simple_repeat Simple_repeat 2 96 0 762 278 87 55 chr11 97023381 97024045 -51759427 - L2 LINE L2 0 3313 2589 3559 155 2 1 chr11 97025103 97025671 -51757801 - MER41B LTR ERV1 -68 556 1 204 348 14 0 chr11 97025852 97025921 -51757551 + L2 LINE L2 2731 2800 -514 4415 128 18 22 chr11 97025970 97026682 -51756790 + MER50 LTR ERV1 3 711 -23 502 296 62 86 chr11 97026684 97026830 -51756642 + L2 LINE L2 2829 2977 -295 3750 160 38 28 chr11 97026830 97027550 -51755922 + LTR8A LTR ERV1 1 727 0 502 296 62 86 chr11 97027550 97027775 -51755697 + L2 LINE L2 2977 3191 -81 3842 195 33 50 chr11 97027777 97028602 -51754870 + MER21B LTR ERV1 1 811 -52 255 253 35 0 chr11 97028921 97029008 -51754464 + CT-rich Low_complexity Low_complexity 1 90 0 1353 183 8 4 chr11 97029049 97029312 -51754160 - LTR1B LTR ERV1 -562 264 1 6777 143 22 8 chr11 97029312 97030929 -51752543 - L1MA1 LINE L1 -265 6037 4386 459 139 13 0 chr11 97030929 97031008 -51752464 - MADE1 DNA Mariner 0 80 1 6777 143 22 8 chr11 97031008 97031340 -51752132 - L1MA1 LINE L1 -1916 4386 4060 707 316 100 22 chr11 97031552 97032281 -51751191 + L1MC/D LINE L1 2979 3768 -2378 280 638 6 0 chr11 97032347 97032524 -51750948 + (TATATG)n Simple_repeat Simple_repeat 2 179 0 * 349 218 0 20 chr11 97032493 97032594 -51750878 + (TA)n Simple_repeat Simple_repeat 1 99 0 387 0 0 0 chr11 97032594 97032637 -51750835 + (GA)n Simple_repeat Simple_repeat 2 44 0 1116 171 0 6 chr11 97032639 97032820 -51750652 - AluSx SINE Alu -36 276 97 980 151 29 6 chr11 97033131 97033303 -51750169 + MER61E LTR ERV1 341 516 -53 679 112 19 9 chr11 97033326 97033433 -51750039 - AluSx SINE Alu -205 108 1 421 359 73 0 chr11 97033758 97034017 -51749455 + L1MC/D LINE L1 4306 4583 -1563 1627 157 36 25 chr11 97034029 97034309 -51749163 + AluJo SINE Alu 1 283 -29 217 292 0 0 chr11 97034496 97034544 -51748928 + (TG)n Simple_repeat Simple_repeat 2 49 0 1702 183 40 6 chr11 97034739 97035088 -51748384 + MLT1A1 LTR MaLR 5 365 0 344 314 89 15 chr11 97035298 97035502 -51747970 + L1MC/D LINE L1 5255 5476 -2338 333 292 22 79 chr11 97035873 97036051 -51747421 + L2 LINE L2 2773 2940 -374 2781 222 53 48 chr11 97036258 97037065 -51746407 + L1MB7 LINE L1 5360 6170 -14 2200 195 84 12 chr11 97038358 97038805 -51744667 + LTR45B LTR ERV1 3 524 -1 2325 93 0 0 chr11 97038937 97039226 -51744246 - AluY SINE Alu -20 291 3 22 0 0 0 chr11 97039524 97039546 -51743926 + AT_rich Low_complexity Low_complexity 1 22 0 1265 282 87 37 chr11 97039860 97040321 -51743151 + MLT1G1 LTR MaLR 73 556 -39 21 0 0 0 chr11 97040387 97040408 -51743064 + AT_rich Low_complexity Low_complexity 1 21 0 199 350 0 0 chr11 97040555 97040615 -51742857 - L2 LINE L2 -5 3308 3249 237 309 155 0 chr11 97042280 97042377 -51741095 + MIR SINE MIR 99 210 -52 21 0 0 0 chr11 97042690 97042711 -51740761 + AT_rich Low_complexity Low_complexity 1 21 0 2107 135 6 0 chr11 97043275 97043586 -51739886 - AluSq SINE Alu 0 313 1 1947 164 10 54 chr11 97045926 97046334 -51737138 - MLT1B LTR MaLR 0 390 1 263 290 137 30 chr11 97046367 97046498 -51736974 + MIR3 SINE MIR 35 179 -29 2298 80 23 7 chr11 97047425 97047726 -51735746 + AluY SINE Alu 1 306 -5 468 0 0 0 chr11 97047854 97047906 -51735566 + (TG)n Simple_repeat Simple_repeat 2 53 0 873 224 86 54 chr11 97047942 97048255 -51735217 - L1MC1 LINE L1 -4 6329 6007 299 349 12 0 chr11 97049015 97049101 -51734371 + MIR3 SINE MIR 81 167 -41 205 279 33 0 chr11 97049183 97049244 -51734228 + CT-rich Low_complexity Low_complexity 2 64 0 269 389 50 66 chr11 97049244 97049442 -51734030 - L2 LINE L2 -6 3266 3072 300 385 18 39 chr11 97049797 97050030 -51733442 - L2 LINE L2 -251 3021 2795 1623 176 44 17 chr11 97050597 97050893 -51732579 - AluJb SINE Alu -8 304 1 941 52 0 0 chr11 97052186 97052302 -51731170 - L1PA3 LINE L1 -2 6153 6038 418 319 138 26 chr11 97052315 97052700 -51730772 + L1ME LINE L1 4405 4832 -1314 370 371 70 19 chr11 97052705 97053074 -51730398 + L1ME LINE L1 5293 5680 -484 353 234 81 40 chr11 97053130 97053254 -51730218 - L1MCa LINE L1 -3263 3301 3173 260 206 15 29 chr11 97053332 97053400 -51730072 - L1M4 LINE L1 -3424 2722 2656 1452 171 47 12 chr11 97053400 97053658 -51729814 + AluJb SINE Alu 11 277 -35 25 0 0 0 chr11 97053658 97053683 -51729789 + AT_rich Low_complexity Low_complexity 1 25 0 540 223 32 43 chr11 97053685 97053873 -51729599 - L1M4 LINE L1 -3483 2663 2478 293 257 0 0 chr11 97053874 97053948 -51729524 + AluSc SINE Alu 224 297 -2 1239 244 129 18 chr11 97053959 97054932 -51728540 - L1MCa LINE L1 -3483 3081 2000 760 282 122 32 chr11 97054924 97055268 -51728204 - L1MCa LINE L1 -5670 375 1 * 259 341 31 23 chr11 97055648 97055777 -51727695 - L2 LINE L2 -508 2806 2677 223 359 22 33 chr11 97055877 97056058 -51727414 - MIR SINE MIR -44 218 40 403 270 57 31 chr11 97056272 97056431 -51727041 - MIR SINE MIR -66 196 34 2622 14 0 0 chr11 97056508 97056831 -51726641 - AluYa5 SINE Alu 0 311 1 306 230 207 0 chr11 97056870 97056957 -51726515 + LTR16A LTR ERVL 1 105 -345 2094 108 47 0 chr11 97057043 97057339 -51726133 + AluSx SINE Alu 1 310 -2 229 183 122 37 chr11 97057350 97057432 -51726040 + LTR16B LTR ERVL 363 451 -13 625 336 78 0 chr11 97057446 97057702 -51725770 + HERV16 LTR ERVL 2 277 -4719 603 345 15 11 chr11 97057760 97058015 -51725457 + HERV16 LTR ERVL 362 620 -4376 1769 168 33 27 chr11 97058015 97058349 -51725123 + MER1B DNA MER1_type 1 336 -1 603 345 15 11 chr11 97058349 97058360 -51725112 + HERV16 LTR ERVL 620 629 -4367 721 246 94 27 chr11 97058370 97058738 -51724734 + MER76 LTR ERV 1 448 -240 345 286 57 9 chr11 97059053 97059158 -51724314 + MER76 LTR ERV 528 637 -51 2380 313 38 19 chr11 97059268 97060912 -51722560 + HERV16 LTR ERVL 774 2511 -2485 237 132 0 0 chr11 97061069 97061107 -51722365 + (TATATG)n Simple_repeat Simple_repeat 5 42 0 290 246 38 131 chr11 97061752 97061935 -51721537 + MER91A DNA MER1_type 1 166 -30 294 264 198 9 chr11 97062468 97062574 -51720898 + L2 LINE L2 3187 3312 -1 1576 189 54 23 chr11 97063833 97064473 -51718999 + L1MC4a LINE L1 5523 6142 -1666 1599 239 34 63 chr11 97064473 97065009 -51718463 - MLT2B1 LTR ERVL 0 520 1 1576 189 54 23 chr11 97065009 97065645 -51717827 + L1MC4a LINE L1 6142 6872 -936 219 36 0 0 chr11 97065645 97065673 -51717799 + (CA)n Simple_repeat Simple_repeat 2 29 0 1576 189 54 23 chr11 97065673 97065752 -51717720 + L1MC4a LINE L1 6872 6947 -861 4147 141 34 5 chr11 97065992 97067359 -51716113 - L1PA14 LINE L1 -11 6150 4705 1131 254 73 45 chr11 97067566 97068015 -51715457 - MLT1C LTR MaLR 0 467 6 327 288 9 27 chr11 97068015 97068126 -51715346 - MIR SINE MIR -93 169 61 558 321 36 73 chr11 97068528 97068886 -51714586 + L2 LINE L2 2928 3272 0 731 262 136 9 chr11 97069220 97069441 -51714031 + MIR SINE MIR 14 262 0 373 277 100 15 chr11 97069427 97069557 -51713915 + L2 LINE L2 3173 3313 0 * 315 253 161 38 chr11 97069911 97070097 -51713375 + MLT1J2 LTR MaLR 2 210 -240 744 266 151 11 chr11 97070150 97070421 -51713051 + LTR50 LTR ERVL 9 317 -478 363 249 181 43 chr11 97070469 97070750 -51712722 + LTR50 LTR ERVL 471 790 -5 296 244 134 25 chr11 97070762 97070881 -51712591 + MLT1J2 LTR MaLR 278 409 -41 252 360 185 31 chr11 97070882 97071168 -51712304 - L2 LINE L2 -1969 1345 1016 33 25 0 0 chr11 97071324 97071364 -51712108 + AT_rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chr11 97071577 97071606 -51711866 + AT_rich Low_complexity Low_complexity 1 29 0 249 316 53 21 chr11 97072386 97072481 -51710991 + L2 LINE L2 3170 3267 -5 364 302 175 16 chr11 97072990 97073179 -51710293 - MIR SINE MIR -32 230 12 541 115 13 0 chr11 97073783 97073861 -51709611 + AluY SINE Alu 212 290 -21 371 221 113 54 chr11 97073993 97074233 -51709239 - HAL1 LINE L1 -11 2496 2243 436 321 64 27 chr11 97074371 97074435 -51709037 + MLT1H LTR MaLR 162 222 -327 2191 79 13 7 chr11 97074435 97074738 -51708734 - AluSx SINE Alu -7 305 1 436 321 64 27 chr11 97074738 97074860 -51708612 + MLT1H LTR MaLR 222 355 -194 547 270 60 70 chr11 97075114 97075286 -51708186 - HAL1 LINE L1 -698 1809 1637 2068 127 0 10 chr11 97075286 97075585 -51707887 + AluSx SINE Alu 1 296 -16 547 270 60 70 chr11 97075585 97075797 -51707675 - HAL1 LINE L1 -870 1637 1429 363 347 60 15 chr11 97075864 97076063 -51707409 + L1 LINE L1 4911 5118 -1028 5408 24 0 9 chr11 97076084 97076846 -51706626 - L1PA3 LINE L1 -671 5484 4732 5782 18 3 0 chr11 97076846 97077508 -51705964 + L1PA3 LINE L1 5486 6152 -3 351 358 0 0 chr11 97077769 97077878 -51705594 - L2 LINE L2 -9 3304 3196 547 280 8 0 chr11 97079213 97079345 -51704127 + MER45A DNA AcHobo 6 138 -40 2079 112 0 0 chr11 97079354 97079675 -51703797 - AluSg SINE Alu 0 325 5 309 189 0 0 chr11 97079679 97079732 -51703740 + MER45A DNA AcHobo 124 176 -2 276 130 0 0 chr11 97079815 97079861 -51703611 + (A)n Simple_repeat Simple_repeat 1 46 0 11712 159 15 8 chr11 97080502 97083538 -51699934 - L1PA11 LINE L1 -13 7599 4587 5317 165 12 0 chr11 97083538 97084577 -51698895 - L1PA11 LINE L1 -3737 3847 2786 664 113 97 32 chr11 97084577 97084701 -51698771 - MER85 DNA T2_type -7 132 1 6684 233 27 36 chr11 97084701 97085102 -51698370 - L1PA11 LINE L1 -4785 2799 2396 267 31 0 0 chr11 97085102 97085134 -51698338 + (TTG)n Simple_repeat Simple_repeat 2 33 0 6684 233 27 36 chr11 97085134 97086748 -51696724 - L1PA11 LINE L1 -5188 2396 1 1625 174 11 7 chr11 97088053 97088335 -51695137 - AluJb SINE Alu -20 292 10 552 196 96 93 chr11 97089333 97089594 -51693878 + MER33 DNA MER1_type 1 265 -2320 2198 129 3 0 chr11 97089594 97089904 -51693568 + AluSx SINE Alu 1 311 -1 552 196 96 93 chr11 97089904 97089943 -51693529 + MER33 DNA MER1_type 265 302 -22 322 296 0 10 chr11 97090705 97090803 -51692669 - MER103 DNA DNA -24 142 46 22 0 0 0 chr11 97091312 97091334 -51692138 + AT_rich Low_complexity Low_complexity 1 22 0 609 216 52 52 chr11 97092206 97092400 -51691072 + MLT1A1 LTR MaLR 1 194 -171 275 91 23 23 chr11 97092411 97092455 -51691017 + MLT1A1 LTR MaLR 353 396 0 2050 113 3 7 chr11 97092482 97092784 -51690688 + AluY SINE Alu 1 301 -10 185 297 16 16 chr11 97093082 97093146 -51690326 - L2 LINE L2 -8 3305 3242 2463 61 6 6 chr11 97093383 97093694 -51689778 - AluY SINE Alu 0 311 1 645 307 35 8 chr11 97094328 97094582 -51688890 - MIR SINE MIR 0 262 2 368 303 202 0 chr11 97095373 97095561 -51687911 + MIR SINE MIR 11 236 -26 327 133 53 0 chr11 97095960 97096035 -51687437 - L1MB3 LINE L1 -15 6168 6090 1062 163 31 15 chr11 97096042 97096238 -51687234 - L1MA4 LINE L1 -279 6021 5823 215 393 82 7 chr11 97096631 97096766 -51686706 - L2 LINE L2 -4 3268 3124 317 304 71 33 chr11 97096840 97097024 -51686448 - L2 LINE L2 -10 3303 3113 5340 132 34 18 chr11 97097375 97098271 -51685201 + L1PBa LINE L1 1 910 -5953 5171 220 8 6 chr11 97098286 97099508 -51683964 + L1 LINE L1 2930 4154 -1992 622 299 113 9 chr11 97099888 97100119 -51683353 + MIR SINE MIR 6 260 -2 405 333 67 18 chr11 97100276 97100501 -51682971 + L2 LINE L2 2806 3041 -272 563 273 154 18 chr11 97100680 97100907 -51682565 + MIR SINE MIR 5 262 0 535 237 7 37 chr11 97100914 97101049 -51682423 + L2 LINE L2 3175 3305 -8 230 278 130 26 chr11 97101465 97101580 -51681892 - L3b LINE CR1 -87 1496 1370 482 231 83 12 chr11 97101739 97101908 -51681564 - L3b LINE CR1 -149 1434 1254 571 60 48 0 chr11 97102325 97102408 -51681064 + L1MA4A LINE L1 6206 6292 -11 23 78 0 0 chr11 97102651 97102702 -51680770 + AT_rich Low_complexity Low_complexity 1 51 0 190 325 84 39 chr11 97102794 97102948 -51680524 - MIR SINE MIR -18 244 84 553 122 10 0 chr11 97103077 97103175 -51680297 + L1MA4A LINE L1 6204 6302 -1 1080 289 131 13 chr11 97103449 97103837 -51679635 - MLT1G LTR MaLR 0 590 157 1544 194 63 3 chr11 97103838 97104331 -51679141 + L1MD2 LINE L1 5078 5606 -753 8649 39 19 1 chr11 97104334 97105410 -51678062 - L1P LINE L1 -1130 5016 3921 2264 213 75 61 chr11 97105410 97106095 -51677377 + L1MD2 LINE L1 5611 6304 -55 345 93 0 0 chr11 97106095 97106149 -51677323 + (T)n Simple_repeat Simple_repeat 1 54 0 43126 33 22 1 chr11 97106154 97112182 -51671290 - L1HS LINE L1 0 6155 2 1857 28 0 0 chr11 97112276 97112493 -51670979 + L1PA4 LINE L1 5933 6149 -6 369 269 173 17 chr11 97112565 97112866 -51670606 + L1MDa LINE L1 1720 2067 -4473 312 214 114 0 chr11 97113070 97113140 -51670332 + MER58 DNA MER1_type 29 106 -235 3817 255 174 10 chr11 97113273 97113939 -51669533 + L1MC4a LINE L1 5790 6345 -1463 446 91 13 0 chr11 97113939 97114016 -51669456 + (TAGA)n Simple_repeat Simple_repeat 1 78 0 3817 255 174 10 chr11 97114016 97115001 -51668471 + L1MC4a LINE L1 6345 7713 -95 23 33 0 0 chr11 97115074 97115104 -51668368 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr11 97115125 97115153 -51668319 + AT_rich Low_complexity Low_complexity 1 28 0 1205 279 34 39 chr11 97115225 97115640 -51667832 + LTR16C LTR ERVL 79 491 0 1922 133 25 0 chr11 97115874 97116153 -51667319 - AluSx SINE Alu -26 286 1 1636 176 18 98 chr11 97116776 97117173 -51666299 - MLT1A1 LTR MaLR 0 365 1 877 358 33 12 chr11 97117514 97118179 -51665293 + HERV16 LTR ERVL 1847 2578 -2418 719 161 103 0 chr11 97118179 97118334 -51665138 + L1MA8 LINE L1 6121 6291 0 791 305 114 30 chr11 97118462 97118883 -51664589 + HERV16 LTR ERVL 2754 3169 -2316 944 278 60 30 chr11 97119114 97119413 -51664059 + LTR16C LTR ERVL 182 489 -2 320 283 25 13 chr11 97119422 97119605 -51663867 + L1M4 LINE L1 4422 4606 -1540 235 240 143 52 chr11 97119632 97119786 -51663686 + L1M4 LINE L1 4736 4903 -1243 268 308 30 50 chr11 97119955 97120153 -51663319 + L1ME3A LINE L1 5962 6155 -15 1272 39 0 0 chr11 97120156 97120311 -51663161 - L1PA5 LINE L1 -6 6148 5994 21 82 0 0 chr11 97121723 97121772 -51661700 + AT_rich Low_complexity Low_complexity 1 49 0 202 397 66 20 chr11 97121788 97121939 -51661533 - L2 LINE L2 -1 3271 3114 741 254 73 0 chr11 97121946 97122111 -51661361 + MLT1E LTR MaLR 9 185 -408 899 235 78 8 chr11 97122153 97122396 -51661076 + MLT1E LTR MaLR 328 587 -6 182 264 19 0 chr11 97122473 97122526 -51660946 - L2 LINE L2 -223 3049 2996 256 301 77 42 chr11 97123013 97123156 -51660316 + L2 LINE L2 3162 3309 -4 25 0 0 0 chr11 97123490 97123515 -51659957 + AT_rich Low_complexity Low_complexity 1 25 0 205 68 45 23 chr11 97123828 97123872 -51659600 + A-rich Low_complexity Low_complexity 3 47 0 295 318 148 11 chr11 97124060 97124236 -51659236 + MIR SINE MIR 53 252 -10 206 135 0 27 chr11 97124203 97124240 -51659232 + L2 LINE L2 3224 3259 -13 * 22 80 0 0 chr11 97124922 97124972 -51658500 + AT_rich Low_complexity Low_complexity 1 50 0 291 217 133 12 chr11 97125289 97125372 -51658100 - L2 LINE L2 -15 3298 3206 307 357 29 21 chr11 97125560 97125700 -51657772 - L2 LINE L2 0 3313 3173 1985 142 3 0 chr11 97126340 97126629 -51656843 - AluSx SINE Alu -22 290 1 874 132 63 0 chr11 97126662 97126821 -51656651 - L1MA1 LINE L1 0 6302 6134 320 96 19 0 chr11 97126825 97126877 -51656595 + L1MA1 LINE L1 6052 6104 -198 22 0 0 0 chr11 97127681 97127703 -51655769 + AT_rich Low_complexity Low_complexity 1 22 0 231 257 31 70 chr11 97127814 97128018 -51655454 - L1ME LINE L1 -342 5779 5586 497 246 211 78 chr11 97128137 97128622 -51654850 + MER34 LTR ERV1 1 585 0 3978 37 21 2 chr11 97128809 97129290 -51654182 - LTR2B LTR ERV1 0 490 1 204 380 52 31 chr11 97129655 97129847 -51653625 + MIR SINE MIR 61 256 -6 189 309 206 24 chr11 97130425 97130551 -51652921 - MIR SINE MIR -112 150 2 189 0 0 0 chr11 97130718 97130739 -51652733 + (A)n Simple_repeat Simple_repeat 1 21 0 2295 94 7 0 chr11 97130761 97131069 -51652403 + AluSg SINE Alu 1 310 0 536 303 68 55 chr11 97131789 97132096 -51651376 + MLT1I LTR MaLR 16 326 -83 2193 79 3 0 chr11 97132120 97132410 -51651062 + AluY SINE Alu 1 291 -20 1673 142 201 8 chr11 97132570 97132929 -51650543 + MSTA LTR MaLR 1 428 0 26 82 0 0 chr11 97132993 97133054 -51650418 + AT_rich Low_complexity Low_complexity 1 61 0 228 286 0 0 chr11 97133146 97133202 -51650270 - L2 LINE L2 0 3313 3258 193 283 50 58 chr11 97134294 97134414 -51649058 + L2 LINE L2 3185 3303 -10 21 57 0 0 chr11 97134415 97134450 -51649022 + AT_rich Low_complexity Low_complexity 1 35 0 224 261 15 0 chr11 97134773 97134838 -51648634 + (TA)n Simple_repeat Simple_repeat 2 67 0 21 71 0 0 chr11 97136670 97136712 -51646760 + AT_rich Low_complexity Low_complexity 1 42 0 4855 108 4 0 chr11 97138398 97139114 -51644358 - L1PA14 LINE L1 -18 6143 5425 317 343 105 21 chr11 97139933 97140076 -51643396 - L2 LINE L2 0 3272 3118 21 0 0 0 chr11 97142223 97142244 -51641228 + AT_rich Low_complexity Low_complexity 1 21 0 226 309 21 43 chr11 97142392 97142486 -51640986 + MIR SINE MIR 101 192 -70 354 286 56 42 chr11 97143627 97143840 -51639632 + HERVL LTR ERVL 1453 1668 -3986 2719 257 9 5 chr11 97143943 97144586 -51638886 + MER82 DNA MER2_type 7 652 -1 290 45 23 0 chr11 97144586 97144630 -51638842 + (CA)n Simple_repeat Simple_repeat 2 46 0 2210 326 91 52 chr11 97144789 97147397 -51636075 + HERVL LTR ERVL 1854 4595 -1059 587 244 8 0 chr11 97147414 97147533 -51635939 - MER52A LTR ERV1 -1635 120 1 402 381 16 4 chr11 97147550 97147797 -51635675 + HERVL LTR ERVL 5107 5356 -408 927 315 91 13 chr11 97147970 97148434 -51635038 + LTR33 LTR ERVL 17 516 -5 28 91 0 0 chr11 97149247 97149324 -51634148 + AT_rich Low_complexity Low_complexity 1 77 0 196 210 65 32 chr11 97149742 97149804 -51633668 - MIR SINE MIR -101 161 98 * 240 391 16 22 chr11 97149782 97149966 -51633506 + MIR3 SINE MIR 11 193 -15 22 0 0 0 chr11 97150247 97150269 -51633203 + AT_rich Low_complexity Low_complexity 1 22 0 219 309 101 47 chr11 97151907 97152056 -51631416 - L2 LINE L2 -182 3090 2934 1205 174 114 32 chr11 97152490 97152874 -51630598 - MER67C LTR ERV1 -242 272 1 180 230 310 0 chr11 97153401 97153488 -51629984 + L2 LINE L2 3180 3293 -20 401 19 0 0 chr11 97153679 97153731 -51629741 + AluY SINE Alu 1 52 -257 * 601 99 0 0 chr11 97153729 97153810 -51629662 - AluS SINE Alu -226 86 6 219 200 0 36 chr11 97154158 97154213 -51629259 + CT-rich Low_complexity Low_complexity 2 54 0 281 325 75 31 chr11 97155673 97155833 -51627639 + LTR33 LTR ERVL 110 276 -245 1485 219 27 30 chr11 97155915 97156285 -51627187 + MLT1C LTR MaLR 63 431 -36 2425 53 0 7 chr11 97158935 97159238 -51624234 - AluY SINE Alu -10 301 1 658 253 38 127 chr11 97159458 97159885 -51623587 + MLT1-int LTR MaLR 982 1370 -1 788 269 103 27 chr11 97159949 97160280 -51623192 + MLT1E2 LTR MaLR 271 626 0 309 277 109 54 chr11 97160360 97160544 -51622928 + HAL1 LINE L1 2295 2488 -19 * 5868 213 33 15 chr11 97160538 97161485 -51621987 + L1 LINE L1 3833 4816 -1330 4175 72 43 5 chr11 97161485 97162068 -51621404 + LTR14B LTR ERVK 4 608 0 5868 213 33 15 chr11 97162068 97162551 -51620921 + L1 LINE L1 4816 5289 -857 992 128 12 29 chr11 97162552 97162724 -51620748 - AluSg/x SINE Alu -23 287 119 9236 95 21 40 chr11 97162878 97166950 -51616522 + L1PA8 LINE L1 1934 6172 0 433 308 26 139 chr11 97167529 97167873 -51615599 - L2 LINE L2 0 3272 2968 988 162 52 29 chr11 97167875 97168085 -51615387 + AluJb SINE Alu 87 301 -11 2202 64 4 4 chr11 97168087 97168367 -51615105 + AluY SINE Alu 2 281 -30 751 242 59 42 chr11 97168476 97168648 -51614824 + L1MC3 LINE L1 3398 3579 -2567 2421 66 0 0 chr11 97168648 97168949 -51614523 - AluY SINE Alu -10 301 1 751 242 59 42 chr11 97168949 97169082 -51614390 + L1MC3 LINE L1 3579 3708 -2438 192 125 0 0 chr11 97169180 97169212 -51614260 + (A)n Simple_repeat Simple_repeat 1 32 0 844 264 47 29 chr11 97169269 97169610 -51613862 + MER41E LTR ERV1 166 512 0 533 219 44 22 chr11 97169610 97169747 -51613725 - L1MB1 LINE L1 -87 6081 5942 * 611 229 47 0 chr11 97169732 97169902 -51613570 - L1MA8 LINE L1 0 6291 6114 802 139 39 50 chr11 97169909 97170089 -51613383 + L1MA8 LINE L1 5936 6113 -178 862 181 90 6 chr11 97170136 97170313 -51613159 - MLT1A1 LTR MaLR 0 365 174 323 292 33 16 chr11 97170368 97170492 -51612980 - MSTC LTR MaLR -205 160 28 6291 119 34 3 chr11 97170784 97171768 -51611704 + L1MA2 LINE L1 5254 6272 -32 243 0 0 0 chr11 97171768 97171795 -51611677 + (TA)n Simple_repeat Simple_repeat 2 28 0 6291 119 34 3 chr11 97171795 97171827 -51611645 + L1MA2 LINE L1 6272 6302 -2 263 64 0 43 chr11 97171832 97171879 -51611593 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 9076 217 90 33 chr11 97171896 97172333 -51611139 + L1MC3 LINE L1 3958 4368 -3417 1995 142 6 10 chr11 97172333 97172644 -51610828 + AluSx SINE Alu 1 310 -2 9076 217 90 33 chr11 97172644 97173157 -51610315 + L1MC3 LINE L1 4368 4850 -2935 1981 131 0 10 chr11 97173157 97173454 -51610018 + AluSg1 SINE Alu 1 294 -15 9076 217 90 33 chr11 97173454 97173698 -51609774 + L1MC3 LINE L1 4850 5079 -2706 1752 167 13 7 chr11 97173698 97173997 -51609475 - AluJb SINE Alu -11 301 1 9076 217 90 33 chr11 97173997 97176417 -51607055 + L1MC3 LINE L1 5079 7784 -1 363 374 50 10 chr11 97177074 97177272 -51606200 + MIR SINE MIR 48 253 -9 2027 226 106 6 chr11 97178328 97178819 -51604653 + MER77 LTR ERV1 60 599 -6 356 268 0 12 chr11 97178941 97179023 -51604449 + L2 LINE L2 3233 3313 0 2664 313 36 65 chr11 97179128 97179680 -51603792 + L2 LINE L2 1736 2302 -1011 1988 129 18 52 chr11 97179680 97180068 -51603404 + THE1C LTR MaLR 1 375 0 2664 313 36 65 chr11 97180068 97181140 -51602332 + L2 LINE L2 2302 3310 -3 24 53 0 0 chr11 97181145 97181183 -51602289 + AT_rich Low_complexity Low_complexity 1 38 0 243 360 108 11 chr11 97181257 97181443 -51602029 + MIR SINE MIR 59 262 0 229 333 224 7 chr11 97181564 97181711 -51601761 - MIR3 SINE MIR -9 199 21 258 32 0 0 chr11 97184026 97184057 -51599415 + (T)n Simple_repeat Simple_repeat 1 31 0 981 104 0 8 chr11 97184233 97184367 -51599105 - AluSq/x SINE Alu -179 133 1 5182 127 41 18 chr11 97184367 97184696 -51598776 + L1PA16 LINE L1 5272 5592 -574 2215 111 0 0 chr11 97184696 97185002 -51598470 + AluSg1 SINE Alu 1 306 -3 5182 127 41 18 chr11 97185002 97185547 -51597925 + L1PA16 LINE L1 5592 6166 0 211 214 125 0 chr11 97185872 97185928 -51597544 + L2 LINE L2 3243 3305 -8 27 29 0 0 chr11 97186206 97186240 -51597232 + AT_rich Low_complexity Low_complexity 1 34 0 194 266 16 47 chr11 97186892 97186956 -51596516 + MIR SINE MIR 137 198 -64 22 0 0 0 chr11 97187338 97187360 -51596112 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr11 97187444 97187480 -51595992 + AT_rich Low_complexity Low_complexity 1 36 0 2084 106 0 3 chr11 97187480 97187763 -51595709 + AluY SINE Alu 1 282 -29 183 80 0 0 chr11 97187769 97187794 -51595678 + (TAA)n Simple_repeat Simple_repeat 1 25 0 216 67 0 0 chr11 97187879 97187909 -51595563 + (TG)n Simple_repeat Simple_repeat 2 31 0 267 254 0 0 chr11 97188364 97188423 -51595049 - MLT1K LTR MaLR -15 573 515 1058 237 70 118 chr11 97188424 97189453 -51594019 - L1MEc LINE L1 -3342 2873 1866 279 326 0 0 chr11 97189510 97189639 -51593833 - Alu SINE Alu 0 301 173 2396 73 0 0 chr11 97190236 97190539 -51592933 - AluY SINE Alu -8 303 1 27 0 0 0 chr11 97190547 97190574 -51592898 + AT_rich Low_complexity Low_complexity 1 27 0 633 274 62 28 chr11 97190574 97190899 -51592573 + L1M4 LINE L1 2963 3298 -2848 288 0 0 0 chr11 97191066 97191098 -51592374 + (T)n Simple_repeat Simple_repeat 1 32 0 2504 45 0 32 chr11 97191590 97191903 -51591569 - AluY SINE Alu -8 303 1 1684 182 26 3 chr11 97192539 97192885 -51590587 + L1MA6 LINE L1 5937 6290 -10 1928 251 54 26 chr11 97193052 97193321 -51590151 + L1ME1 LINE L1 5518 5778 -388 893 166 29 10 chr11 97193321 97193526 -51589946 + L1MA8 LINE L1 6078 6286 -5 1928 251 54 26 chr11 97193526 97193870 -51589602 + L1ME1 LINE L1 5778 6148 -18 1983 158 25 12 chr11 97194234 97194639 -51588833 + L1MA9 LINE L1 5903 6312 0 30 59 0 0 chr11 97195077 97195128 -51588344 + AT_rich Low_complexity Low_complexity 1 51 0 295 128 11 191 chr11 97195378 97195472 -51588000 + MADE1 DNA Mariner 4 80 0 22 56 0 0 chr11 97195743 97195779 -51587693 + AT_rich Low_complexity Low_complexity 1 36 0 2414 163 55 5 chr11 97195834 97196271 -51587201 + LOR1b LTR ERV1 3 461 0 25 51 0 0 chr11 97196310 97196349 -51587123 + AT_rich Low_complexity Low_complexity 1 39 0 181 182 36 0 chr11 97196409 97196464 -51587008 + (TA)n Simple_repeat Simple_repeat 2 58 0 22 0 0 0 chr11 97196535 97196557 -51586915 + AT_rich Low_complexity Low_complexity 1 22 0 418 278 86 43 chr11 97198018 97198227 -51585245 - L2 LINE L2 0 3313 3096 215 326 148 22 chr11 97198290 97198425 -51585047 - L2 LINE L2 -3135 179 28 22 0 0 0 chr11 97198744 97198766 -51584706 + AT_rich Low_complexity Low_complexity 1 22 0 242 215 138 69 chr11 97199096 97199226 -51584246 - MER103 DNA DNA -19 147 9 946 238 0 0 chr11 97199610 97199795 -51583677 - MER5A DNA MER1_type -1 188 4 1538 337 33 10 chr11 97200334 97201030 -51582442 - HERV16 LTR ERVL -2440 2556 1838 270 279 57 41 chr11 97201953 97202075 -51581397 + MIR SINE MIR 31 154 -108 360 279 266 0 chr11 97202185 97202343 -51581129 + MIR SINE MIR 49 248 -14 424 268 138 56 chr11 97202359 97202590 -51580882 + MIR SINE MIR 13 262 0 2006 150 48 20 chr11 97202909 97203263 -51580209 + THE1B LTR MaLR 1 364 0 7973 108 36 1 chr11 97203263 97204419 -51579053 + THE1B-int LTR MaLR 1 1197 -383 400 323 111 5 chr11 97205104 97205293 -51578179 + MIR SINE MIR 47 255 -7 1910 146 96 9 chr11 97205364 97205699 -51577773 + THE1B LTR MaLR 1 364 0 181 327 103 28 chr11 97205816 97205923 -51577549 - MIR SINE MIR -108 154 40 240 174 0 22 chr11 97207635 97207681 -51575791 - L1M3c LINE L1 -6092 49 5 4471 116 3 10 chr11 97208305 97208994 -51574478 - L1PA14 LINE L1 -2 6159 5476 24 0 0 0 chr11 97209029 97209053 -51574419 + GC_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr11 97209202 97209224 -51574248 + GC_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr11 97209265 97209286 -51574186 + (T)n Simple_repeat Simple_repeat 1 21 0 11713 184 11 70 chr11 97209286 97212378 -51571094 - L1PA14 LINE L1 -672 5489 2592 592 342 163 14 chr11 97213585 97214015 -51569457 - L2 LINE L2 -13 3300 2807 661 345 26 13 chr11 97214036 97214262 -51569210 - MIR SINE MIR -21 241 13 507 306 27 45 chr11 97214298 97214520 -51568952 - L2 LINE L2 -575 2739 2522 444 298 210 27 chr11 97214652 97215018 -51568454 - L2 LINE L2 -1 3312 2880 461 389 58 22 chr11 97215421 97215786 -51567686 + L2 LINE L2 2339 2716 -598 266 345 68 125 chr11 97215816 97216167 -51567305 + L2 LINE L2 2942 3272 0 404 184 60 18 chr11 97216849 97217017 -51566455 + (TATATG)n Simple_repeat Simple_repeat 3 177 0 24 32 0 0 chr11 97217272 97217303 -51566169 + AT_rich Low_complexity Low_complexity 1 31 0 26 50 0 0 chr11 97217708 97217748 -51565724 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr11 97217876 97217897 -51565575 + AT_rich Low_complexity Low_complexity 1 21 0 409 322 67 59 chr11 97218125 97219089 -51564383 - HAL1 LINE L1 -723 1784 813 774 311 23 5 chr11 97219233 97219452 -51564020 + MIR SINE MIR 12 234 -28 5023 144 32 22 chr11 97220708 97221602 -51561870 - MER4D LTR ERV1 0 903 1 243 157 0 0 chr11 97222766 97222817 -51560655 + (CA)n Simple_repeat Simple_repeat 2 52 0 529 312 30 60 chr11 97223528 97223794 -51559678 - MIR SINE MIR 0 262 5 207 0 0 0 chr11 97224213 97224236 -51559236 + (TA)n Simple_repeat Simple_repeat 2 24 0 194 88 0 29 chr11 97224418 97224452 -51559020 + (TA)n Simple_repeat Simple_repeat 2 34 0 231 141 31 78 chr11 97224461 97224525 -51558947 + L1MC4 LINE L1 6659 6719 -1323 517 333 28 11 chr11 97225363 97225543 -51557929 - MIR SINE MIR -79 183 1 3437 92 12 16 chr11 97226003 97226504 -51556968 - MER9 LTR ERVK -12 499 1 188 203 51 68 chr11 97227702 97227761 -51555711 + MER5A DNA MER1_type 131 188 -1 289 314 19 38 chr11 97227880 97227985 -51555487 + L2 LINE L2 3173 3275 -38 200 365 12 12 chr11 97228091 97228176 -51555296 - MER5B DNA MER1_type -1 177 93 184 171 29 0 chr11 97228709 97228744 -51554728 + L2 LINE L2 3270 3305 -8 893 36 9 0 chr11 97228774 97228886 -51554586 + L1P LINE L1 3796 3908 -2238 4935 99 45 4 chr11 97228886 97229634 -51553838 + L1MA1 LINE L1 5518 6302 0 320 277 38 44 chr11 97230309 97230468 -51553004 + L2 LINE L2 3115 3272 -41 198 292 0 0 chr11 97230499 97230547 -51552925 + L2 LINE L2 3224 3271 -1 22 0 0 0 chr11 97230745 97230767 -51552705 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr11 97231674 97231703 -51551769 + AT_rich Low_complexity Low_complexity 1 29 0 2179 117 10 0 chr11 97231935 97232244 -51551228 - AluSx SINE Alu 0 312 1 1946 135 10 3 chr11 97232341 97232644 -51550828 - AluSx SINE Alu -7 305 1 225 0 0 0 chr11 97232663 97232688 -51550784 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 273 57 0 0 chr11 97232687 97232722 -51550750 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr11 97233445 97233466 -51550006 + AT_rich Low_complexity Low_complexity 1 21 0 243 294 32 16 chr11 97234248 97234374 -51549098 + L1ME2 LINE L1 1380 1507 -4916 44 35 0 0 chr11 97234379 97234437 -51549035 + AT_rich Low_complexity Low_complexity 1 58 0 685 193 0 0 chr11 97234438 97234552 -51548920 - FLAM_C SINE Alu -27 116 3 1287 313 85 9 chr11 97234600 97235376 -51548096 + L1ME2 LINE L1 1775 2609 -4513 292 286 52 40 chr11 97235578 97235826 -51547646 + L1ME2 LINE L1 2874 3124 -3998 1801 238 83 47 chr11 97235862 97235969 -51547503 + L1ME2 LINE L1 6157 6259 -700 186 43 0 0 chr11 97235969 97235992 -51547480 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 1801 238 83 47 chr11 97235992 97236645 -51546827 + L1ME2 LINE L1 6259 6944 -15 2103 227 18 45 chr11 97240024 97240532 -51542940 + L1MB3 LINE L1 5439 5890 -299 2131 123 0 3 chr11 97240532 97240832 -51542640 + AluSq SINE Alu 1 299 -14 2103 227 18 45 chr11 97240832 97241107 -51542365 + L1MB3 LINE L1 5890 6171 -18 22 0 0 0 chr11 97241213 97241235 -51542237 + AT_rich Low_complexity Low_complexity 1 22 0 1863 104 4 0 chr11 97241364 97241614 -51541858 + AluSq SINE Alu 44 294 -19 198 313 12 38 chr11 97242732 97242812 -51540660 - L2 LINE L2 -58 3255 3178 695 302 49 9 chr11 97244106 97244331 -51539141 + MIR SINE MIR 1 234 -28 283 339 99 8 chr11 97245012 97245133 -51538339 - MIR SINE MIR -106 156 25 25 51 0 0 chr11 97245169 97245208 -51538264 + AT_rich Low_complexity Low_complexity 1 39 0 502 250 18 0 chr11 97245589 97245701 -51537771 + MER94 DNA DNA 1 114 -20 2340 75 0 0 chr11 97246783 97247077 -51536395 + AluY SINE Alu 8 301 -10 182 170 0 21 chr11 97247614 97247661 -51535811 + GA-rich Low_complexity Low_complexity 2 47 0 733 278 113 43 chr11 97248081 97248451 -51535021 + MLT1I LTR MaLR 1 396 -13 203 0 0 36 chr11 97248628 97248656 -51534816 + (GGAA)n Simple_repeat Simple_repeat 1 27 0 205 152 0 0 chr11 97248656 97248689 -51534783 + GA-rich Low_complexity Low_complexity 1 33 0 612 254 0 0 chr11 97248804 97248926 -51534546 + FLAM_A SINE Alu 1 122 -11 595 206 95 14 chr11 97248926 97249768 -51533704 - L1MC2 LINE L1 -6 7764 6991 342 0 0 0 chr11 97249768 97249806 -51533666 + (TG)n Simple_repeat Simple_repeat 2 39 0 595 206 95 14 chr11 97249806 97250205 -51533267 - L1MC2 LINE L1 -779 6991 6160 223 338 53 45 chr11 97250215 97250348 -51533124 - MIR SINE MIR -108 154 21 190 339 0 34 chr11 97251039 97251098 -51532374 + L3b LINE CR1 1468 1524 -59 261 333 153 0 chr11 97251587 97251737 -51531735 + L2 LINE L2 2883 3055 -217 281 410 35 0 chr11 97252529 97252673 -51530799 - MIR3 SINE MIR -44 164 16 351 73 0 36 chr11 97253556 97253611 -51529861 - L1PA16 LINE L1 -3 6163 6111 1521 163 25 0 chr11 97253612 97253888 -51529584 - L1PA16 LINE L1 -179 5987 5705 1854 273 92 32 chr11 97254412 97254817 -51528655 - L1M4 LINE L1 -841 5305 4926 1756 123 4 4 chr11 97254817 97255090 -51528382 + AluSp SINE Alu 33 305 0 1854 273 92 32 chr11 97255090 97255899 -51527573 - L1M4 LINE L1 -1220 4926 4017 1653 255 25 18 chr11 97255915 97256350 -51527122 - MER82 DNA MER2_type -1 652 215 1532 206 0 27 chr11 97256520 97256821 -51526651 + AluJo SINE Alu 1 293 -19 233 263 0 0 chr11 97256851 97256908 -51526564 - MLT1I LTR MaLR 0 409 353 420 20 0 0 chr11 97256914 97256963 -51526509 + (CA)n Simple_repeat Simple_repeat 2 50 0 697 285 43 4 chr11 97257129 97257406 -51526066 - L1M4 LINE L1 -3093 3053 2766 546 292 121 35 chr11 97257871 97258186 -51525286 + L2 LINE L2 1630 1971 -1343 1583 232 67 11 chr11 97258219 97258655 -51524817 + MLT1C LTR MaLR 6 465 -2 1898 321 71 33 chr11 97258660 97259870 -51523602 + L2 LINE L2 2017 3282 -31 34 79 0 0 chr11 97260142 97260218 -51523254 + AT_rich Low_complexity Low_complexity 1 76 0 330 138 0 0 chr11 97260335 97260393 -51523079 + (CA)n Simple_repeat Simple_repeat 1 58 0 468 275 74 7 chr11 97260395 97260544 -51522928 - MIR SINE MIR -70 192 34 483 302 50 70 chr11 97260947 97261205 -51522267 - MIR SINE MIR 0 262 10 1998 122 0 25 chr11 97261718 97261752 -51521720 - AluSq SINE Alu -2 311 278 933 101 31 0 chr11 97261752 97261911 -51521561 + CT-rich Low_complexity Low_complexity 3 166 0 1998 122 0 25 chr11 97261911 97262195 -51521277 - AluSq SINE Alu -35 278 1 21 0 0 0 chr11 97262266 97262287 -51521185 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr11 97263148 97263175 -51520297 + AT_rich Low_complexity Low_complexity 1 27 0 25 65 0 0 chr11 97264884 97264930 -51518542 + AT_rich Low_complexity Low_complexity 1 46 0 260 342 88 18 chr11 97264939 97265053 -51518419 - MIR SINE MIR -121 141 20 288 246 0 0 chr11 97265149 97265214 -51518258 - MLT1H LTR MaLR 0 549 485 638 273 7 0 chr11 97265259 97265409 -51518063 + MER58B DNA MER1_type 173 323 -18 180 0 0 0 chr11 97266163 97266183 -51517289 + (T)n Simple_repeat Simple_repeat 1 20 0 42041 53 3 0 chr11 97266813 97272949 -51510523 - L1PA4 LINE L1 0 6155 4 205 291 66 82 chr11 97272989 97273171 -51510301 - MIR SINE MIR -50 212 34 23 92 0 0 chr11 97274667 97274732 -51508740 + AT_rich Low_complexity Low_complexity 1 65 0 267 299 17 21 chr11 97276068 97276222 -51507250 + MIR SINE MIR 43 260 -2 1895 107 13 63 chr11 97277149 97277467 -51506005 + AluSq SINE Alu 1 302 -11 22 80 0 0 chr11 97278512 97278562 -51504910 + AT_rich Low_complexity Low_complexity 1 50 0 6788 56 18 0 chr11 97280338 97281835 -51501637 + L1PA5 LINE L1 4631 6149 -5 1876 120 46 11 chr11 97281835 97282118 -51501354 + AluSg SINE Alu 1 293 -17 3002 176 17 2 chr11 97282309 97283058 -51500414 - L1P4 LINE L1 -688 5477 4716 2903 249 5 12 chr11 97283069 97283437 -51500035 - L1P4 LINE L1 -2477 3669 3300 1733 179 98 20 chr11 97283437 97283834 -51499638 - MSTA LTR MaLR 0 428 1 2903 249 5 12 chr11 97283834 97284241 -51499231 - L1P4 LINE L1 -2846 3300 2899 2710 207 12 7 chr11 97284728 97285313 -51498159 - L1MC3 LINE L1 -19 7766 7179 219 186 0 0 chr11 97286993 97287036 -51496436 + GA-rich Low_complexity Low_complexity 5 47 0 207 0 0 0 chr11 97287036 97287059 -51496413 + (ATTG)n Simple_repeat Simple_repeat 2 24 0 198 0 0 0 chr11 97288254 97288276 -51495196 + (T)n Simple_repeat Simple_repeat 1 22 0 27 0 0 0 chr11 97289732 97289759 -51493713 + AT_rich Low_complexity Low_complexity 1 27 0 940 209 68 62 chr11 97290132 97290294 -51493178 - MER33 DNA MER1_type -2262 323 163 1988 159 30 0 chr11 97290294 97290627 -51492845 - MER7A DNA MER2_type -2 344 4 940 209 68 62 chr11 97290627 97290785 -51492687 - MER33 DNA MER1_type -2422 163 1 276 258 32 0 chr11 97290885 97290947 -51492525 + polypyrimidine Low_complexity Low_complexity 2 65 0 232 363 0 12 chr11 97291534 97291614 -51491858 - L2 LINE L2 0 3272 3194 22 56 0 0 chr11 97291723 97291759 -51491713 + AT_rich Low_complexity Low_complexity 1 36 0 1339 326 70 20 chr11 97292432 97293184 -51490288 + L1MEc LINE L1 14 803 -5593 9233 225 59 12 chr11 97293379 97293471 -51490001 + L1PA15-16 LINE L1 1601 1687 -5162 2207 102 6 10 chr11 97293471 97293785 -51489687 + AluSp SINE Alu 1 313 0 9233 225 59 12 chr11 97293785 97297345 -51486127 + L1PA15-16 LINE L1 1687 5411 -1438 209 0 0 88 chr11 97297347 97297381 -51486091 + (A)n Simple_repeat Simple_repeat 1 31 0 851 291 11 21 chr11 97297516 97297891 -51485581 - L1M4 LINE L1 -3104 3042 2672 256 276 55 55 chr11 97298028 97298155 -51485317 - L1MCc LINE L1 -5956 467 341 185 381 62 10 chr11 97298392 97298489 -51484983 + L2 LINE L2 3134 3235 -37 1914 156 0 7 chr11 97298750 97299045 -51484427 + AluSg SINE Alu 1 293 -17 5970 210 21 7 chr11 97300403 97301848 -51481624 + L1PA16 LINE L1 1 1580 -5269 5145 155 10 8 chr11 97301954 97303381 -51480091 + L1PA16 LINE L1 5426 6860 -9 243 0 0 0 chr11 97304073 97304100 -51479372 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 740 76 17 8 chr11 97304137 97304255 -51479217 + L1PA13 LINE L1 6045 6163 0 32 43 0 0 chr11 97305122 97305168 -51478304 + AT_rich Low_complexity Low_complexity 1 46 0 25 51 0 0 chr11 97305361 97305400 -51478072 + AT_rich Low_complexity Low_complexity 1 39 0 1534 275 52 11 chr11 97305833 97306291 -51477181 + MLT1D LTR MaLR 21 497 -8 434 341 52 20 chr11 97306734 97306939 -51476533 + MER20B DNA MER1_type 7 219 0 321 232 0 14 chr11 97307431 97307500 -51475972 + MER3 DNA MER1_type 2 69 -140 2671 169 14 14 chr11 97307558 97308068 -51475404 - L1PA15 LINE L1 -4 6161 5652 852 110 0 8 chr11 97308068 97308186 -51475286 - AluSg/x SINE Alu -18 292 176 243 0 0 0 chr11 97309730 97309757 -51473715 + (A)n Simple_repeat Simple_repeat 1 27 0 3226 174 38 13 chr11 97310245 97310872 -51472600 + MER73 LTR ERVL 2 644 0 292 372 101 0 chr11 97311626 97311755 -51471717 + L2 LINE L2 3122 3263 -9 22 0 0 0 chr11 97312255 97312277 -51471195 + AT_rich Low_complexity Low_complexity 1 22 0 245 372 50 54 chr11 97312357 97312615 -51470857 - L3 LINE CR1 -2 1575 1319 980 295 49 28 chr11 97313109 97313642 -51469830 + L1ME1 LINE L1 1403 1946 -4594 293 262 56 9 chr11 97313659 97313766 -51469706 + L1ME1 LINE L1 2090 2201 -4339 385 224 103 55 chr11 97313874 97314039 -51469433 + L1ME1 LINE L1 2403 2575 -3965 3462 270 86 20 chr11 97314075 97315726 -51467746 + L1ME1 LINE L1 2614 4373 -2167 1651 260 103 21 chr11 97315926 97316827 -51466645 + L1ME1 LINE L1 4613 5587 -953 2263 113 3 0 chr11 97316844 97317155 -51466317 + AluSx SINE Alu 1 312 0 25 0 0 0 chr11 97317270 97317295 -51466177 + GC_rich Low_complexity Low_complexity 1 25 0 252 0 0 0 chr11 97317314 97317342 -51466130 + (A)n Simple_repeat Simple_repeat 1 28 0 647 246 31 112 chr11 97317342 97317883 -51465589 + L1ME1 LINE L1 5582 6078 -482 953 225 45 0 chr11 97317885 97318085 -51465387 + MER20 DNA MER1_type 11 219 0 1214 286 68 11 chr11 97318085 97318543 -51464929 + L1ME1 LINE L1 6076 6559 -1 2510 105 6 0 chr11 97319073 97319424 -51464048 + THE1A LTR MaLR 1 353 -2 6228 104 1 1 chr11 97319427 97320288 -51463184 + THE1A-int LTR MaLR 1 861 -719 2437 97 41 0 chr11 97320305 97320646 -51462826 + THE1A LTR MaLR 1 355 0 184 304 0 0 chr11 97321806 97321862 -51461610 - L3 LINE CR1 -572 1005 950 306 308 171 19 chr11 97321878 97322089 -51461383 + MIR SINE MIR 7 249 -13 195 306 90 28 chr11 97322121 97322265 -51461207 - L3 LINE CR1 -686 891 739 493 194 0 108 chr11 97322491 97322657 -51460815 + FLAM_A SINE Alu 1 152 0 6760 120 18 16 chr11 97322717 97324020 -51459452 - L1MA2 LINE L1 -1 6303 5005 312 353 26 42 chr11 97325170 97325360 -51458112 + MIR SINE MIR 20 206 -56 202 381 12 12 chr11 97325444 97325528 -51457944 - L2 LINE L2 0 3313 3230 710 300 132 13 chr11 97325607 97326150 -51457322 - L2 LINE L2 -238 3075 2476 641 235 101 42 chr11 97326280 97326616 -51456856 - L1MC5 LINE L1 -132 7829 7474 372 204 11 11 chr11 97326822 97326910 -51456562 - L1MC5 LINE L1 -801 7160 7073 824 218 41 0 chr11 97327079 97327249 -51456223 - MLT2B1 LTR ERVL -343 177 1 198 0 0 0 chr11 97327504 97327526 -51455946 + (TA)n Simple_repeat Simple_repeat 1 22 0 180 0 0 0 chr11 97327626 97327646 -51455826 + (A)n Simple_repeat Simple_repeat 1 20 0 2253 105 3 3 chr11 97327646 97327952 -51455520 - AluSg SINE Alu -4 306 1 1872 173 0 0 chr11 97328060 97328367 -51455105 - AluSx SINE Alu -5 307 1 27 62 0 0 chr11 97328375 97328423 -51455049 + AT_rich Low_complexity Low_complexity 1 48 0 836 232 35 81 chr11 97328444 97328729 -51454743 - MLT1A1 LTR MaLR 0 365 94 24 53 0 0 chr11 97328781 97328819 -51454653 + AT_rich Low_complexity Low_complexity 1 38 0 274 222 62 49 chr11 97328916 97328997 -51454475 + L2 LINE L2 1893 1974 -1340 939 338 106 39 chr11 97329056 97329452 -51454020 - L2 LINE L2 -1697 1617 1249 2261 144 76 66 chr11 97329452 97329937 -51453535 - LTR2B LTR ERV1 0 490 1 939 338 106 39 chr11 97329937 97330307 -51453165 - L2 LINE L2 -2065 1249 800 1427 170 4 0 chr11 97330352 97330617 -51452855 - L1 LINE L1 -908 5238 4973 294 179 0 0 chr11 97330618 97330674 -51452798 + L1MA2 LINE L1 6249 6304 0 358 261 111 20 chr11 97330757 97330956 -51452516 + MER112 DNA MER1_type 44 260 0 267 203 0 0 chr11 97331207 97331266 -51452206 + (TG)n Simple_repeat Simple_repeat 2 60 0 225 0 0 0 chr11 97332115 97332140 -51451332 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 24 0 0 0 chr11 97332340 97332364 -51451108 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr11 97332494 97332515 -51450957 + AT_rich Low_complexity Low_complexity 1 21 0 207 69 0 0 chr11 97332887 97332916 -51450556 + (TAA)n Simple_repeat Simple_repeat 2 30 0 369 218 52 129 chr11 97332926 97333119 -51450353 - MIR SINE MIR -9 253 76 273 98 0 0 chr11 97333839 97333880 -51449592 + (CA)n Simple_repeat Simple_repeat 2 42 0 2359 221 33 4 chr11 97334291 97334842 -51448630 - L1MC3 LINE L1 -1795 5990 5424 243 241 99 62 chr11 97334856 97335018 -51448454 - L1ME LINE L1 -305 5816 5649 661 216 32 22 chr11 97335043 97335228 -51448244 - L1MC3 LINE L1 -864 5282 5096 513 281 100 50 chr11 97335233 97335532 -51447940 - L1MC/D LINE L1 -2028 5780 5467 31 44 0 0 chr11 97335813 97335858 -51447614 + AT_rich Low_complexity Low_complexity 1 45 0 188 324 54 0 chr11 97336268 97336342 -51447130 - MIR SINE MIR -13 249 172 7295 203 20 10 chr11 97336465 97338772 -51444700 + L1PA13 LINE L1 1320 3668 -3129 10170 195 26 6 chr11 97338786 97341770 -51441702 + L1PA13 LINE L1 3786 6814 0 426 234 91 91 chr11 97342631 97342883 -51440589 - MLT1K LTR MaLR -123 465 214 255 61 0 0 chr11 97343129 97343162 -51440310 + (T)n Simple_repeat Simple_repeat 1 33 0 2623 19 3 3 chr11 97343263 97343570 -51439902 - AluYb8 SINE Alu -11 307 1 869 238 27 5 chr11 97343747 97343932 -51439540 - MER58A DNA MER1_type -34 190 2 495 308 80 26 chr11 97344002 97344388 -51439084 + MLT1I LTR MaLR 1 407 -2 427 210 25 0 chr11 97344604 97344685 -51438787 - L2 LINE L2 -2 3311 3229 215 239 0 0 chr11 97344875 97344921 -51438551 + CT-rich Low_complexity Low_complexity 3 48 0 238 288 76 81 chr11 97344944 97345180 -51438292 - MLT1K LTR MaLR -158 430 196 1584 113 0 17 chr11 97346712 97346951 -51436521 + AluSg/x SINE Alu 78 312 0 186 133 0 0 chr11 97347174 97347204 -51436268 + (A)n Simple_repeat Simple_repeat 1 30 0 212 356 78 17 chr11 97347572 97347687 -51435785 + MIR3 SINE MIR 42 163 -45 356 320 66 37 chr11 97347881 97348125 -51435347 + L1MEc LINE L1 51 301 -6095 502 245 89 21 chr11 97348152 97348479 -51434993 - L1M4 LINE L1 -2719 3427 3079 1124 94 0 0 chr11 97348600 97348749 -51434723 - AluSg/x SINE Alu -8 304 156 1932 245 126 16 chr11 97348749 97349682 -51433790 - L1MCb LINE L1 -4862 1183 578 21 36 0 0 chr11 97349686 97349714 -51433758 + AT_rich Low_complexity Low_complexity 1 28 0 3988 177 59 19 chr11 97349720 97349989 -51433483 - L1MB3 LINE L1 -8 6175 5918 267 54 0 0 chr11 97349989 97350026 -51433446 + (TG)n Simple_repeat Simple_repeat 2 38 0 3988 177 59 19 chr11 97350026 97350723 -51432749 - L1MB3 LINE L1 -265 5918 5173 643 246 0 0 chr11 97350730 97350864 -51432608 - L1MCb LINE L1 -5358 687 554 2306 111 25 6 chr11 97350875 97351234 -51432238 - THE1C LTR MaLR -9 366 1 397 51 0 17 chr11 97351234 97351293 -51432179 - THE1C-int LTR MaLR 0 1580 1523 1016 219 18 14 chr11 97351302 97351567 -51431905 + L1MB5 LINE L1 5915 6180 0 2092 128 3 0 chr11 97351615 97351920 -51431552 - AluSx SINE Alu -6 306 1 433 31 0 31 chr11 97352682 97352747 -51430725 + (TAG)n Simple_repeat Simple_repeat 1 63 0 7247 40 1 0 chr11 97353251 97354892 -51428580 - L1PA5 LINE L1 -2 6152 4499 3023 30 3 3 chr11 97354893 97355265 -51428207 + L1PA5 LINE L1 4134 4505 -1641 694 185 0 8 chr11 97357029 97357183 -51426289 - FLAM_C SINE Alu 0 153 1 202 268 18 0 chr11 97357418 97357474 -51425998 + (TA)n Simple_repeat Simple_repeat 1 57 0 28 0 0 0 chr11 97358085 97358113 -51425359 + AT_rich Low_complexity Low_complexity 1 28 0 1869 112 56 0 chr11 97358749 97359036 -51424436 + AluSg1 SINE Alu 1 303 -6 243 241 0 0 chr11 97359100 97359158 -51424314 + L1ME4a LINE L1 6061 6118 -3 1623 181 44 41 chr11 97359877 97360219 -51423253 - MER2 DNA MER2_type 0 344 2 357 272 88 32 chr11 97360525 97360650 -51422822 + MER3 DNA MER1_type 1 132 -77 264 77 0 0 chr11 97361288 97361327 -51422145 + (TC)n Simple_repeat Simple_repeat 2 40 0 396 0 0 0 chr11 97361327 97361371 -51422101 + (CA)n Simple_repeat Simple_repeat 1 44 0 1475 161 66 60 chr11 97361426 97361761 -51421711 + MER1B DNA MER1_type 1 337 0 21 36 0 0 chr11 97362683 97362711 -51420761 + AT_rich Low_complexity Low_complexity 1 28 0 248 0 31 0 chr11 97364187 97364219 -51419253 + (TAA)n Simple_repeat Simple_repeat 2 34 0 262 178 0 27 chr11 97364425 97364498 -51418974 + CT-rich Low_complexity Low_complexity 2 72 0 2260 204 16 0 chr11 97365367 97365813 -51417659 - L1P LINE L1 -3142 3004 2552 * 3680 188 17 3 chr11 97365811 97366530 -51416942 + L1PA11 LINE L1 3979 4707 -1439 5910 109 16 4 chr11 97366652 97368120 -51415352 + L1PA11 LINE L1 4697 6166 -8 202 229 0 0 chr11 97368681 97368729 -51414743 + A-rich Low_complexity Low_complexity 2 49 0 186 309 73 15 chr11 97368743 97368811 -51414661 + MIR SINE MIR 32 103 -105 226 274 85 91 chr11 97369037 97369340 -51414132 + L2 LINE L2 2721 3118 -195 514 265 113 11 chr11 97369351 97369536 -51413936 + MIR SINE MIR 32 235 -27 352 273 116 40 chr11 97369544 97369742 -51413730 + L2 LINE L2 3097 3309 -4 334 277 25 42 chr11 97371739 97371858 -51411614 - MIR SINE MIR -89 173 57 3998 90 21 2 chr11 97371860 97372436 -51411036 + L1PA13 LINE L1 5572 6158 -5 291 213 0 0 chr11 97372829 97372904 -51410568 + (TA)n Simple_repeat Simple_repeat 1 75 0 301 242 16 0 chr11 97373004 97373132 -51410340 + (TA)n Simple_repeat Simple_repeat 2 131 0 39 60 0 0 chr11 97373158 97373225 -51410247 + AT_rich Low_complexity Low_complexity 1 67 0 537 198 9 0 chr11 97373227 97373333 -51410139 - L1MD1 LINE L1 -16 6295 6189 1201 265 41 64 chr11 97373392 97373878 -51409594 - MLT1D LTR MaLR -10 495 21 3157 212 57 28 chr11 97373916 97374633 -51408839 - L1MD1 LINE L1 -201 6110 5353 180 77 0 0 chr11 97374633 97374659 -51408813 + (TTA)n Simple_repeat Simple_repeat 2 27 0 3157 212 57 28 chr11 97374659 97375202 -51408270 - L1MD1 LINE L1 -958 5353 4827 974 237 28 16 chr11 97375197 97375518 -51407954 - L1MD1 LINE L1 -2759 3456 3132 * 762 280 125 13 chr11 97375563 97375874 -51407598 + LTR16A LTR ERVL 99 444 -6 2312 94 3 0 chr11 97375932 97376241 -51407231 - AluSg SINE Alu 0 310 1 384 355 70 36 chr11 97376664 97377034 -51406438 - L1MD1 LINE L1 -4579 1817 1461 205 152 0 0 chr11 97377034 97377067 -51406405 + (CA)n Simple_repeat Simple_repeat 1 33 0 384 355 70 36 chr11 97377067 97377257 -51406215 - L1MD1 LINE L1 -4935 1461 1279 2428 66 0 3 chr11 97377257 97377560 -51405912 - AluY SINE Alu -9 302 1 384 355 70 36 chr11 97377560 97377718 -51405754 - L1MD1 LINE L1 -5117 1279 1038 3376 100 2 0 chr11 97377830 97378282 -51405190 - MLT2A2 LTR ERVL 0 453 1 1141 90 17 6 chr11 97378282 97378459 -51405013 - HERVL-A2 LTR ERVL 0 5654 5476 29 0 0 0 chr11 97379051 97379080 -51404392 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr11 97379340 97379367 -51404105 + AT_rich Low_complexity Low_complexity 1 27 0 183 289 154 20 chr11 97381740 97381889 -51401583 + L2 LINE L2 3140 3308 -5 1785 98 0 4 chr11 97382085 97382340 -51401132 - L1PA6 LINE L1 -1 6153 5900 5391 86 2 46 chr11 97382787 97383586 -51399886 - L1PA8A LINE L1 -27 6104 5341 29 0 0 0 chr11 97384568 97384597 -51398875 + AT_rich Low_complexity Low_complexity 1 29 0 195 42 0 0 chr11 97385490 97385514 -51397958 + (TC)n Simple_repeat Simple_repeat 1 24 0 285 29 0 0 chr11 97385796 97385813 -51397659 + (TG)n Simple_repeat Simple_repeat 1 51 0 285 29 0 0 chr11 97385813 97385847 -51397625 + (TG)n Simple_repeat Simple_repeat 2 35 0 244 291 0 0 chr11 97386031 97386110 -51397362 + T-rich Low_complexity Low_complexity 1 79 0 184 333 153 26 chr11 97387049 97387238 -51396234 + MIR SINE MIR 14 226 -36 430 342 158 15 chr11 97388500 97388760 -51394712 - L2 LINE L2 0 3272 2976 242 354 32 32 chr11 97389108 97389266 -51394206 - L2 LINE L2 -481 2833 2676 450 0 0 0 chr11 97389557 97389607 -51393865 + (TG)n Simple_repeat Simple_repeat 2 51 0 30 27 0 0 chr11 97390040 97390077 -51393395 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr11 97391543 97391566 -51391906 + AT_rich Low_complexity Low_complexity 1 23 0 1798 183 45 20 chr11 97391614 97391969 -51391503 + THE1B LTR MaLR 1 364 0 11522 107 1 0 chr11 97391969 97393548 -51389924 + THE1B-int LTR MaLR 1 1580 0 2159 124 48 20 chr11 97393548 97393902 -51389570 + THE1B LTR MaLR 1 364 0 30 59 0 0 chr11 97394157 97394208 -51389264 + AT_rich Low_complexity Low_complexity 1 51 0 268 330 89 22 chr11 97394820 97394999 -51388473 + MIR SINE MIR 48 238 -24 326 286 128 8 chr11 97396207 97396340 -51387132 - MIR SINE MIR -15 247 99 5351 133 75 5 chr11 97397425 97398536 -51384936 - Tigger1 DNA MER2_type -3 2415 1171 1542 213 29 0 chr11 97398508 97398818 -51384654 - Tigger1 DNA MER2_type -2076 342 24 * 189 340 20 60 chr11 97399226 97399376 -51384096 + MIR SINE MIR 29 172 -90 221 267 0 17 chr11 97399376 97399436 -51384036 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 1815 195 26 0 chr11 97399436 97399775 -51383697 + MER7A DNA MER2_type 1 346 0 389 255 71 66 chr11 97399786 97399998 -51383474 - LTR33 LTR ERVL -4 517 305 350 253 80 19 chr11 97400141 97400303 -51383169 - Charlie1a DNA MER1_type 0 1455 1284 693 320 25 0 chr11 97400310 97400510 -51382962 - MER58A DNA MER1_type -2 222 18 3597 225 97 52 chr11 97400547 97401758 -51381714 - Charlie1a DNA MER1_type -167 1288 24 28 61 0 0 chr11 97402544 97402593 -51380879 + AT_rich Low_complexity Low_complexity 1 49 0 43418 43 3 1 chr11 97402653 97408784 -51374688 - L1PA3 LINE L1 -3 6152 12 993 227 143 106 chr11 97409485 97409746 -51373726 + MLT2B1 LTR ERVL 1 251 -269 2445 121 13 8 chr11 97409746 97410119 -51373353 + THE1C LTR MaLR 1 375 0 9559 144 37 3 chr11 97410119 97411648 -51371824 + THE1C-int LTR MaLR 1 1580 0 2466 119 16 5 chr11 97411648 97412019 -51371453 + THE1C LTR MaLR 1 375 0 993 227 143 106 chr11 97412019 97412253 -51371219 + MLT2B1 LTR ERVL 250 516 -4 276 235 51 0 chr11 97412458 97412556 -51370916 + (TA)n Simple_repeat Simple_repeat 2 104 0 225 0 0 0 chr11 97412564 97412589 -51370883 + (CA)n Simple_repeat Simple_repeat 2 26 0 192 152 0 0 chr11 97414459 97414492 -51368980 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 330 240 62 31 chr11 97414633 97414729 -51368743 + L2 LINE L2 3213 3311 -2 2154 207 30 5 chr11 97415189 97415619 -51367853 - MER74C LTR ERVL 0 460 20 198 0 0 0 chr11 97419102 97419124 -51364348 + (TTG)n Simple_repeat Simple_repeat 3 24 0 923 275 31 57 chr11 97419125 97419511 -51363961 + MLT2C1 LTR ERVL 22 397 0 1333 347 53 39 chr11 97420004 97420056 -51363416 - MERVL LTR ERVL -1129 4525 4475 2239 151 45 21 chr11 97420056 97420474 -51362998 + MSTA LTR MaLR 1 428 0 1333 347 53 39 chr11 97420474 97422117 -51361355 - MERVL LTR ERVL -1179 4475 2762 910 364 49 3 chr11 97422107 97422494 -51360978 - MERVL LTR ERVL -3453 1543 1139 * 399 245 76 104 chr11 97422584 97422833 -51360639 - MERVL LTR ERVL -3994 1002 761 394 276 42 78 chr11 97422892 97423109 -51360363 - MER63A DNA MER1_type -1 209 1 905 259 24 57 chr11 97423705 97424002 -51359470 - LTR16A LTR ERVL 0 450 164 2041 117 0 0 chr11 97425156 97425447 -51358025 - AluSx SINE Alu -19 293 3 38 0 0 0 chr11 97426128 97426166 -51357306 + AT_rich Low_complexity Low_complexity 1 38 0 314 323 76 13 chr11 97427002 97427160 -51356312 - MIR SINE MIR -1 261 94 1651 148 6 22 chr11 97427425 97427742 -51355730 - L1MA4A LINE L1 -4 6299 5988 331 258 49 94 chr11 97427525 97427769 -51355703 - L1MA9 LINE L1 -122 6190 5958 321 24 0 0 chr11 97428409 97428450 -51355022 - L1PA13 LINE L1 -6 6157 6117 9934 213 61 24 chr11 97428469 97431761 -51351711 - L1MA4 LINE L1 -1 6481 3312 1613 148 87 36 chr11 97431761 97432118 -51351354 + THE1C LTR MaLR 1 375 0 9934 213 61 24 chr11 97432118 97434339 -51349133 - L1MA4 LINE L1 -3170 3312 680 537 55 0 0 chr11 97434339 97434412 -51349060 + (TCTCC)n Simple_repeat Simple_repeat 5 77 0 9934 213 61 24 chr11 97434412 97434870 -51348602 - L1MA4 LINE L1 -5802 680 240 31 0 0 0 chr11 97434902 97434933 -51348539 + AT_rich Low_complexity Low_complexity 1 31 0 1912 178 61 31 chr11 97435547 97436083 -51347389 + MLT2A2 LTR ERVL 1 554 0 312 289 54 39 chr11 97436228 97436432 -51347040 + MER114 LTR ERV 23 229 -419 388 256 81 0 chr11 97436485 97436645 -51346827 + MER114 LTR ERV 330 502 -146 5517 207 21 21 chr11 97436763 97438429 -51345043 + L1MC1 LINE L1 4661 6327 -6 22 0 0 0 chr11 97439258 97439280 -51344192 + AT_rich Low_complexity Low_complexity 1 22 0 3448 128 18 19 chr11 97439369 97439952 -51343520 - LTR10C LTR ERV1 0 529 1 2020 110 40 0 chr11 97440131 97440430 -51343042 - AluY SINE Alu 0 311 1 26 0 0 0 chr11 97440817 97440843 -51342629 + AT_rich Low_complexity Low_complexity 1 26 0 26 30 0 0 chr11 97441111 97441144 -51342328 + AT_rich Low_complexity Low_complexity 1 33 0 344 181 0 0 chr11 97441302 97441374 -51342098 - L1PA6 LINE L1 -2 6152 6081 2122 124 0 31 chr11 97441459 97441781 -51341691 - AluSx SINE Alu 0 312 1 26 0 0 0 chr11 97441862 97441888 -51341584 + AT_rich Low_complexity Low_complexity 1 26 0 181 333 18 0 chr11 97443177 97443234 -51340238 - L2 LINE L2 0 3313 3256 5279 156 37 26 chr11 97443412 97444383 -51339089 - L1PA13 LINE L1 -4 6159 5200 351 0 0 0 chr11 97444383 97444422 -51339050 + (TGG)n Simple_repeat Simple_repeat 3 41 0 5279 156 37 26 chr11 97444422 97444515 -51338957 - L1PA13 LINE L1 -963 5200 5109 2299 57 40 3 chr11 97444515 97444813 -51338659 - AluY SINE Alu -2 309 1 5279 156 37 26 chr11 97444813 97445721 -51337751 - L1PA13 LINE L1 -1054 5109 4150 404 339 201 36 chr11 97445722 97446469 -51337003 + L2 LINE L2 1869 2738 -576 658 186 73 0 chr11 97446771 97446895 -51336577 - FLAM_A SINE Alu 0 133 1 201 306 0 0 chr11 97447381 97447430 -51336042 - MER5A DNA MER1_type -102 87 39 1459 192 3 7 chr11 97447626 97447917 -51335555 + AluJo SINE Alu 1 290 -22 281 218 0 0 chr11 97448670 97448725 -51334747 + L2 LINE L2 3258 3312 -1 235 345 68 14 chr11 97450316 97450464 -51333008 + L3 LINE CR1 1357 1512 -65 330 289 11 0 chr11 97450488 97450578 -51332894 + MIR SINE MIR 165 255 -7 231 229 84 24 chr11 97450678 97450761 -51332711 + HsTC2 DNA Tc2 1810 1897 -1 330 327 53 0 chr11 97451667 97451780 -51331692 + MLT1J LTR MaLR 79 197 -314 288 0 0 0 chr11 97452192 97452224 -51331248 + (T)n Simple_repeat Simple_repeat 1 32 0 288 0 0 0 chr11 97452375 97452407 -51331065 + (T)n Simple_repeat Simple_repeat 1 32 0 210 147 0 0 chr11 97452589 97452623 -51330849 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 203 122 0 24 chr11 97452623 97452664 -51330808 + (GAAA)n Simple_repeat Simple_repeat 1 40 0 330 341 65 41 chr11 97453199 97453369 -51330103 - MIR3 SINE MIR -24 184 11 309 167 0 0 chr11 97454412 97454466 -51329006 + MER53 DNA DNA 1 54 -135 421 229 0 0 chr11 97454531 97454636 -51328836 + MER53 DNA DNA 69 173 -16 22 0 0 0 chr11 97454816 97454838 -51328634 + AT_rich Low_complexity Low_complexity 1 22 0 211 298 18 0 chr11 97455445 97455502 -51327970 - L2 LINE L2 0 3313 3256 295 286 33 11 chr11 97455511 97455602 -51327870 + L2 LINE L2 3189 3281 -32 372 305 8 23 chr11 97456917 97457045 -51326427 + L2 LINE L2 3187 3312 -1 361 313 122 0 chr11 97457316 97457463 -51326009 - MIR SINE MIR -37 225 61 21 0 0 0 chr11 97458176 97458197 -51325275 + AT_rich Low_complexity Low_complexity 1 21 0 466 364 88 19 chr11 97458685 97459149 -51324323 - L1M4 LINE L1 -1040 5106 4611 2153 233 57 18 chr11 97459512 97460114 -51323358 - L1MB7 LINE L1 -7 6177 5553 7209 142 28 129 chr11 97460120 97461773 -51321699 + THE1C-int LTR MaLR 95 1580 0 2010 157 24 29 chr11 97461773 97462150 -51321322 + THE1C LTR MaLR 1 375 0 736 228 37 0 chr11 97462150 97462312 -51321160 - L1MB7 LINE L1 -626 5558 5391 4446 273 62 28 chr11 97462312 97464490 -51318982 - L1M4c LINE L1 -4564 2393 89 34 24 0 0 chr11 97464497 97464538 -51318934 + AT_rich Low_complexity Low_complexity 1 41 0 278 222 161 0 chr11 97464580 97464661 -51318811 - L1M4c LINE L1 -6761 98 5 3252 96 4 2 chr11 97465196 97465663 -51317809 - L1PA12 LINE L1 0 6168 5701 980 56 0 0 chr11 97465892 97466017 -51317455 - L1PB1 LINE L1 -7 6144 6020 246 148 0 0 chr11 97466209 97466263 -51317209 + (T)n Simple_repeat Simple_repeat 1 54 0 381 165 25 38 chr11 97466263 97466342 -51317130 + LTR67 LTR ERVL 435 512 -45 1916 298 77 24 chr11 97467669 97468768 -51314704 - L2 LINE L2 -16 3297 2152 32 67 0 0 chr11 97470371 97470431 -51313041 + AT_rich Low_complexity Low_complexity 1 60 0 988 236 48 99 chr11 97471404 97471992 -51311480 + L1MC4 LINE L1 7483 8040 -2 409 283 50 6 chr11 97472108 97472288 -51311184 + L1MC5 LINE L1 7278 7465 -496 26 0 0 0 chr11 97472311 97472337 -51311135 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr11 97473209 97473232 -51310240 + AT_rich Low_complexity Low_complexity 1 23 0 459 306 88 32 chr11 97473893 97474109 -51309363 - L2 LINE L2 -479 2835 2608 1365 231 141 16 chr11 97474170 97474595 -51308877 + L1ME1 LINE L1 5518 6001 -163 2197 253 82 33 chr11 97474651 97476069 -51307403 + L1MD2 LINE L1 4531 6035 -324 896 260 193 37 chr11 97476070 97476501 -51306971 + MLT1D LTR MaLR 2 499 -6 398 247 0 21 chr11 97476505 97476598 -51306874 + L1MD2 LINE L1 6031 6121 -238 461 229 69 0 chr11 97476622 97476753 -51306719 + L1MD2 LINE L1 6209 6348 -11 22 80 0 0 chr11 97479063 97479113 -51304359 + AT_rich Low_complexity Low_complexity 1 50 0 657 205 0 0 chr11 97479393 97479520 -51303952 - FLAM_C SINE Alu -16 127 1 632 214 35 79 chr11 97480733 97480962 -51302510 - MER20 DNA MER1_type 0 219 1 230 270 68 14 chr11 97480962 97481036 -51302436 + MLT1L LTR MaLR 149 226 -389 421 323 114 5 chr11 97481071 97481272 -51302200 + MIR SINE MIR 20 242 -20 31 68 0 0 chr11 97481408 97481467 -51302005 + AT_rich Low_complexity Low_complexity 1 59 0 386 284 12 25 chr11 97483686 97483848 -51299624 + GA-rich Low_complexity Low_complexity 1 160 0 193 267 40 27 chr11 97484408 97484483 -51298989 - L2 LINE L2 -794 2520 2445 1920 236 131 42 chr11 97485756 97486473 -51296999 + L1M2 LINE L1 1 807 -6402 7780 203 35 9 chr11 97486556 97488447 -51295025 + L1M2 LINE L1 4580 6515 -749 1199 204 47 23 chr11 97488453 97488752 -51294720 + L1M2 LINE L1 6568 6873 -489 * 7936 178 30 35 chr11 97488747 97491480 -51291992 - L1P3 LINE L1 -3544 2917 136 1532 252 11 37 chr11 97491480 97491937 -51291535 - LTR2 LTR ERV1 0 449 5 7936 178 30 35 chr11 97491937 97492072 -51291400 - L1P3 LINE L1 -6325 136 2 2209 97 0 13 chr11 97492293 97492592 -51290880 + AluY SINE Alu 3 297 -14 1251 270 80 40 chr11 97493164 97493641 -51289831 + MLT1H LTR MaLR 54 549 0 1496 310 66 12 chr11 97493907 97494610 -51288862 - L2 LINE L2 -168 3145 2400 369 0 0 0 chr11 97495214 97495255 -51288217 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 387 0 0 0 chr11 97495308 97495351 -51288121 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 382 286 34 34 chr11 97496001 97496176 -51287296 - MER5B DNA MER1_type -3 175 1 180 111 0 0 chr11 97496480 97496507 -51286965 + (CA)n Simple_repeat Simple_repeat 2 28 0 1605 179 49 35 chr11 97496508 97496876 -51286596 - THE1C LTR MaLR -2 373 1 207 100 0 0 chr11 97496884 97496914 -51286558 + (CA)n Simple_repeat Simple_repeat 1 30 0 362 293 20 33 chr11 97497051 97497099 -51286373 + ERVL-E LTR ERVL 5610 5757 -7 366 274 29 0 chr11 97497099 97497201 -51286271 + Ricksha DNA DNA 243 347 -2899 1502 315 106 3 chr11 97497205 97497770 -51285702 + MLT2E LTR ERVL 6 628 0 186 48 24 48 chr11 97498961 97499003 -51284469 + (TTA)n Simple_repeat Simple_repeat 1 41 0 295 300 0 0 chr11 97499940 97500020 -51283452 + MLT1J LTR MaLR 130 209 -302 999 183 0 0 chr11 97500022 97500202 -51283270 + FRAM SINE Alu 1 172 -4 337 301 144 35 chr11 97500229 97500485 -51282987 + MLT1J LTR MaLR 228 511 0 210 296 80 34 chr11 97501266 97501354 -51282118 - L2 LINE L2 0 3272 3181 428 342 17 55 chr11 97501417 97501654 -51281818 + MLT1H LTR MaLR 95 322 -227 5035 202 36 8 chr11 97502195 97503851 -51279621 + L1MA9 LINE L1 4612 6312 0 3812 246 122 19 chr11 97503951 97505999 -51277473 - L1M4 LINE L1 -3417 3227 951 557 262 0 72 chr11 97506008 97506102 -51277370 - L1M4 LINE L1 -5498 1044 945 2219 89 0 10 chr11 97506102 97506404 -51277068 - AluY SINE Alu -12 299 1 557 262 0 72 chr11 97506404 97506546 -51276926 - L1M4 LINE L1 -5597 945 825 354 147 0 0 chr11 97506551 97506619 -51276853 + (GA)n Simple_repeat Simple_repeat 2 69 0 251 207 0 17 chr11 97506621 97506679 -51276793 + GA-rich Low_complexity Low_complexity 4 60 0 1149 314 100 32 chr11 97506701 97507193 -51276279 - L1M4 LINE L1 -5753 789 229 1842 133 112 9 chr11 97507193 97507523 -51275949 + THE1B LTR MaLR 1 364 0 1149 314 100 32 chr11 97507523 97507769 -51275703 - L1M4 LINE L1 -6313 229 1 23 0 0 0 chr11 97509823 97509846 -51273626 + AT_rich Low_complexity Low_complexity 1 23 0 1521 32 0 0 chr11 97509846 97510032 -51273440 - L1PA4 LINE L1 -92 6063 5878 1329 270 73 39 chr11 97511006 97511705 -51271767 + MER20B DNA MER1_type 58 780 -3 237 241 17 0 chr11 97512628 97512686 -51270786 - MER58A DNA MER1_type -4 220 162 537 262 16 0 chr11 97512691 97512813 -51270659 - MER58A DNA MER1_type 0 135 12 338 325 108 21 chr11 97513826 97514020 -51269452 - L2 LINE L2 0 3313 3103 628 383 39 78 chr11 97514025 97514589 -51268883 - MER34 LTR ERV1 0 542 1 298 333 172 48 chr11 97514757 97515268 -51268204 - L2 LINE L2 -203 3110 2506 25 0 0 0 chr11 97515437 97515462 -51268010 + AT_rich Low_complexity Low_complexity 1 25 0 1580 166 17 14 chr11 97515476 97515771 -51267701 + AluJb SINE Alu 13 308 -4 32 26 0 0 chr11 97516217 97516256 -51267216 + AT_rich Low_complexity Low_complexity 1 39 0 502 248 74 47 chr11 97517416 97517674 -51265798 - LTR49-int LTR ERV1 -5759 572 308 312 259 66 75 chr11 97517704 97517932 -51265540 - LTR49-int LTR ERV1 -6089 242 17 183 80 0 0 chr11 97518026 97518051 -51265421 + (CAA)n Simple_repeat Simple_repeat 2 26 0 249 263 105 21 chr11 97518353 97518448 -51265024 - MER34B LTR ERV1 -458 107 5 215 308 0 0 chr11 97518825 97518877 -51264595 - MER5A DNA MER1_type -1 188 137 354 319 68 79 chr11 97519443 97519976 -51263496 + L1ME2 LINE L1 7 533 -5537 1450 295 91 44 chr11 97520146 97522690 -51260782 + L1ME2 LINE L1 525 3136 -2944 1405 199 0 28 chr11 97522694 97522864 -51260608 + AluJo SINE Alu 1 161 -151 2521 152 21 7 chr11 97522864 97523286 -51260186 - MSTA LTR MaLR 0 428 1 1405 199 0 28 chr11 97523286 97523397 -51260075 + AluJo SINE Alu 161 274 -38 452 265 52 28 chr11 97523470 97523719 -51259753 + L1ME2 LINE L1 3177 3431 -2649 549 273 83 61 chr11 97523774 97524773 -51258699 + L1ME2 LINE L1 5061 6089 -9 848 137 0 0 chr11 97524237 97524361 -51259111 - L1PA15 LINE L1 -23 6142 6019 238 276 0 144 chr11 97525313 97525434 -51258038 - MER5A DNA MER1_type -12 166 76 2251 99 0 10 chr11 97525434 97525746 -51257726 - AluSp SINE Alu -4 309 1 238 276 0 144 chr11 97525746 97525798 -51257674 - MER5A DNA MER1_type -102 76 18 21 0 0 0 chr11 97526064 97526085 -51257387 + AT_rich Low_complexity Low_complexity 1 21 0 196 30 61 0 chr11 97526667 97526700 -51256772 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2103 85 0 14 chr11 97526743 97527037 -51256435 - AluY SINE Alu -21 290 1 313 354 25 38 chr11 97527267 97527425 -51256047 + MIR SINE MIR 32 187 -75 352 293 126 11 chr11 97527610 97527784 -51255688 - MIR SINE MIR 0 262 69 181 255 0 0 chr11 97527905 97527952 -51255520 - MIR3 SINE MIR -3 205 159 2356 167 43 14 chr11 97528195 97528609 -51254863 - MSTA LTR MaLR -2 426 1 845 227 4 97 chr11 97528663 97528901 -51254571 + MLT2C1 LTR ERVL 4 219 -195 289 208 69 8 chr11 97529003 97529133 -51254339 + (TA)n Simple_repeat Simple_repeat 1 138 0 304 364 35 14 chr11 97529173 97529316 -51254156 - MIR3 SINE MIR -48 160 15 815 374 87 2 chr11 97529954 97530347 -51253125 + LTR33 LTR ERVL 4 429 -92 582 184 0 0 chr11 97530349 97530447 -51253025 - MSTD LTR MaLR -2 394 297 246 100 100 0 chr11 97530463 97530503 -51252969 - MSTC LTR MaLR -384 44 1 2347 267 24 19 chr11 97530504 97530628 -51252844 - MSTD-int LTR MaLR -1 1734 1612 2049 203 39 0 chr11 97530628 97531037 -51252435 + MSTA LTR MaLR 1 425 -3 2347 267 24 19 chr11 97531037 97531503 -51251969 - MSTD-int LTR MaLR -123 1612 1141 1216 220 110 33 chr11 97531501 97531864 -51251608 - MSTD-int LTR MaLR -1319 416 26 * 1054 286 10 30 chr11 97531917 97532214 -51251258 - MSTD LTR MaLR -2 394 104 1420 184 98 13 chr11 97532214 97532519 -51250953 - MSTB LTR MaLR 0 426 96 1242 47 0 0 chr11 97532519 97532668 -51250804 - L1P2 LINE L1 -452 5703 5555 435 124 214 0 chr11 97532689 97532778 -51250694 - MSTB LTR MaLR -318 108 1 363 177 48 15 chr11 97532778 97532867 -51250605 - MSTC LTR MaLR -306 90 1 12176 182 26 12 chr11 97534455 97535119 -51248353 - Tigger1 DNA MER2_type -1 2417 1764 1563 118 4 17 chr11 97535119 97535393 -51248079 - AluSg/x SINE Alu 0 312 70 12176 182 26 12 chr11 97535393 97535507 -51247965 - Tigger1 DNA MER2_type -654 1764 1653 2222 89 13 10 chr11 97535507 97535811 -51247661 - AluY SINE Alu -6 305 1 12176 182 26 12 chr11 97535811 97536261 -51247211 - Tigger1 DNA MER2_type -765 1653 1211 1992 136 0 0 chr11 97536261 97536548 -51246924 - AluSx SINE Alu -25 287 1 12176 182 26 12 chr11 97536548 97537701 -51245771 - Tigger1 DNA MER2_type -1207 1211 1 194 62 31 0 chr11 97538333 97538365 -51245107 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1710 215 53 52 chr11 97539365 97539919 -51243553 - MER39 LTR ERV1 -10 683 1 190 250 0 0 chr11 97539924 97539960 -51243512 + L2 LINE L2 3151 3186 -86 33 25 0 0 chr11 97540298 97540338 -51243134 + AT_rich Low_complexity Low_complexity 1 40 0 24 0 0 0 chr11 97540626 97540650 -51242822 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr11 97540946 97540974 -51242498 + AT_rich Low_complexity Low_complexity 1 28 0 277 214 20 0 chr11 97541902 97542000 -51241472 + CT-rich Low_complexity Low_complexity 3 102 0 312 331 98 49 chr11 97542695 97543063 -51240409 + L1MC/D LINE L1 5279 5664 -2144 26 0 0 0 chr11 97543222 97543248 -51240224 + AT_rich Low_complexity Low_complexity 1 26 0 1347 172 8 22 chr11 97543275 97543542 -51239930 + Tigger2 DNA MER2_type 2334 2596 -122 402 21 0 0 chr11 97545734 97545781 -51237691 + (TA)n Simple_repeat Simple_repeat 1 47 0 1511 218 105 28 chr11 97545899 97546366 -51237106 + MLT1D LTR MaLR 1 503 -2 1930 130 3 7 chr11 97547248 97547576 -51235896 - AluSp SINE Alu 0 327 1 942 227 66 0 chr11 97547677 97547875 -51235597 - AluJo SINE Alu -101 211 1 261 226 9 75 chr11 97547972 97548078 -51235394 - HERV16 LTR ERVL -2925 2071 1973 364 40 0 0 chr11 97548084 97548134 -51235338 - L1PA8 LINE L1 -264 5908 5859 * 1310 44 0 0 chr11 97548133 97548291 -51235181 + L1P3 LINE L1 5563 5720 -434 556 260 8 0 chr11 97548295 97548422 -51235050 - Ricksha DNA DNA -1126 128 1 241 281 83 42 chr11 97548476 97548572 -51234900 + MIR SINE MIR 2 101 -161 1058 307 55 74 chr11 97549314 97549474 -51233998 + HERV16 LTR ERVL 1792 1953 -3043 1467 170 52 138 chr11 97549474 97549939 -51233533 + MSTC LTR MaLR 2 426 -2 1058 307 55 74 chr11 97549939 97550416 -51233056 + HERV16 LTR ERVL 1953 2417 -2579 493 362 55 13 chr11 97550601 97551054 -51232418 + HERV16 LTR ERVL 3040 3511 -2143 23 54 0 0 chr11 97551478 97551515 -51231957 + AT_rich Low_complexity Low_complexity 1 37 0 483 144 207 9 chr11 97553573 97553684 -51229788 + MER1B DNA MER1_type 1 133 -164 456 320 93 25 chr11 97554324 97554690 -51228782 + L1MEc LINE L1 1249 1639 -4924 247 318 65 0 chr11 97554734 97554888 -51228584 + L1MEc LINE L1 1520 1683 -4701 781 279 109 35 chr11 97555394 97556223 -51227249 + L1MEc LINE L1 2346 3235 -3147 224 213 0 0 chr11 97556408 97556455 -51227017 + (CA)n Simple_repeat Simple_repeat 2 48 0 1183 285 67 4 chr11 97556651 97557111 -51226361 + L1ME3 LINE L1 5666 6154 -8 1709 179 21 48 chr11 97558511 97558886 -51224586 + MLT1A1 LTR MaLR 1 365 0 206 172 0 35 chr11 97559324 97559382 -51224090 + (CAAA)n Simple_repeat Simple_repeat 2 57 0 413 174 0 1 chr11 97560854 97560940 -51222532 + L1PB4 LINE L1 5955 6039 -115 333 193 35 0 chr11 97560940 97560997 -51222475 + AluJ/FRAM SINE Alu 231 289 -13 301 157 43 0 chr11 97561018 97561088 -51222384 + L1PB4 LINE L1 6075 6147 -9 1056 226 0 0 chr11 97561141 97561322 -51222150 + Tigger7 DNA MER2_type 56 236 -469 490 143 197 161 chr11 97561326 97561549 -51221923 + Tigger7 DNA MER2_type 2354 2584 -3 22 0 0 0 chr11 97561557 97561579 -51221893 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr11 97562289 97562324 -51221148 + AT_rich Low_complexity Low_complexity 1 35 0 181 160 20 20 chr11 97562858 97562908 -51220564 + CT-rich Low_complexity Low_complexity 1 50 0 1050 72 0 7 chr11 97563295 97563434 -51220038 - MER85 DNA T2_type 0 139 2 577 333 96 33 chr11 97563936 97564477 -51218995 + L1MEd LINE L1 565 1139 -4980 252 238 0 0 chr11 97564521 97564584 -51218888 + GA-rich Low_complexity Low_complexity 3 65 0 249 268 10 21 chr11 97564598 97564695 -51218777 + L1MEd LINE L1 1173 1268 -5042 268 281 164 35 chr11 97564880 97565051 -51218421 - MIR SINE MIR -64 198 6 1072 300 7 0 chr11 97565254 97565524 -51217948 - LTR40a LTR ERVL 0 519 248 852 244 12 50 chr11 97565577 97565835 -51217637 - LTR40a LTR ERVL -271 248 1 201 286 58 70 chr11 97565854 97566025 -51217447 - L2 LINE L2 -102 3211 3043 243 88 0 0 chr11 97566274 97566308 -51217164 + (TA)n Simple_repeat Simple_repeat 2 35 0 328 215 0 0 chr11 97566413 97566478 -51216994 - LTR40a LTR ERVL 0 519 455 240 184 0 0 chr11 97566494 97566543 -51216929 + (CA)n Simple_repeat Simple_repeat 2 50 0 252 0 0 0 chr11 97566603 97566631 -51216841 + (TG)n Simple_repeat Simple_repeat 2 29 0 35 24 0 0 chr11 97567999 97568041 -51215431 + AT_rich Low_complexity Low_complexity 1 42 0 852 285 111 14 chr11 97568245 97568758 -51214714 - L1M4 LINE L1 -2199 3947 3385 185 286 31 61 chr11 97569212 97569310 -51214162 - MIR SINE MIR -43 219 125 232 194 0 28 chr11 97569686 97569758 -51213714 + GA-rich Low_complexity Low_complexity 4 73 0 30 59 0 0 chr11 97569859 97569910 -51213562 + AT_rich Low_complexity Low_complexity 1 51 0 22 70 0 0 chr11 97570566 97570609 -51212863 + AT_rich Low_complexity Low_complexity 1 43 0 28 61 0 0 chr11 97570892 97570941 -51212531 + AT_rich Low_complexity Low_complexity 1 49 0 189 0 0 0 chr11 97571562 97571583 -51211889 + (A)n Simple_repeat Simple_repeat 1 21 0 1943 140 0 31 chr11 97571633 97571929 -51211543 + AluSx SINE Alu 1 288 -24 213 65 0 0 chr11 97571929 97571960 -51211512 + (CTAA)n Simple_repeat Simple_repeat 2 32 0 1943 140 0 31 chr11 97571960 97571985 -51211487 + AluSx SINE Alu 288 312 0 526 199 59 29 chr11 97572622 97572831 -51210641 + L1ME1 LINE L1 5211 5424 -743 * 2401 185 8 77 chr11 97572826 97573436 -51210036 - L1PA13 LINE L1 -827 5319 4752 * 2567 142 57 2 chr11 97573433 97573869 -51209603 + L1PA13 LINE L1 5326 5785 -376 14272 42 17 6 chr11 97573870 97576458 -51207014 + L1PA5 LINE L1 3561 6154 0 1961 166 5 44 chr11 97576458 97576861 -51206611 + L1PA13 LINE L1 5769 6163 0 1913 224 36 78 chr11 97576863 97577556 -51205916 + L1ME1 LINE L1 5419 6082 -84 208 191 21 0 chr11 97577574 97577621 -51205851 + (TA)n Simple_repeat Simple_repeat 1 48 0 1415 275 52 20 chr11 97577658 97578440 -51205032 - L1M4 LINE L1 -1091 5055 4214 1278 115 16 0 chr11 97578476 97578667 -51204805 - L1P4 LINE L1 -423 5745 5552 2146 83 16 6 chr11 97578667 97578979 -51204493 + L1PA13 LINE L1 5848 6163 0 950 233 22 89 chr11 97579079 97579392 -51204080 + MLT1A1 LTR MaLR 2 293 -72 310 260 18 0 chr11 97579392 97579562 -51203910 - L1M4 LINE L1 -2064 4082 3935 2072 82 7 43 chr11 97579600 97579905 -51203567 + AluY SINE Alu 1 294 -17 358 367 13 7 chr11 97580647 97580797 -51202675 - L3b LINE CR1 -121 1462 1312 23 86 0 0 chr11 97580856 97580914 -51202558 + AT_rich Low_complexity Low_complexity 1 58 0 285 210 0 0 chr11 97581268 97581330 -51202142 + (CA)n Simple_repeat Simple_repeat 2 63 0 11578 171 68 6 chr11 97584200 97584249 -51199223 + Tigger1 DNA MER2_type 2 47 -2371 183 80 0 0 chr11 97584249 97584274 -51199198 + (TG)n Simple_repeat Simple_repeat 2 26 0 11578 171 68 6 chr11 97584274 97586499 -51196973 + Tigger1 DNA MER2_type 47 2418 0 220 313 60 27 chr11 97586843 97586993 -51196479 - MIR SINE MIR -1 261 107 27 0 0 0 chr11 97587227 97587254 -51196218 + AT_rich Low_complexity Low_complexity 1 27 0 369 210 12 0 chr11 97587255 97587336 -51196136 + L1MB8 LINE L1 4954 5035 -1111 387 295 12 0 chr11 97587460 97587626 -51195846 + (CACCC)n Simple_repeat Simple_repeat 3 170 0 258 207 0 0 chr11 97587990 97588048 -51195424 + (CA)n Simple_repeat Simple_repeat 2 59 0 315 0 0 0 chr11 97588836 97588871 -51194601 + (TC)n Simple_repeat Simple_repeat 2 36 0 243 0 0 0 chr11 97588870 97588897 -51194575 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 2320 214 55 2 chr11 97589459 97590083 -51193389 + L1MB8 LINE L1 5136 5783 -395 * 2982 179 25 2 chr11 97590079 97590639 -51192833 + L1MA3 LINE L1 3670 4242 -1904 4652 121 62 8 chr11 97590639 97591431 -51192041 + L1MA3 LINE L1 5462 6305 0 1688 158 7 13 chr11 97591438 97591742 -51191730 + L1MB8 LINE L1 5782 6083 -95 193 306 61 20 chr11 97592806 97592904 -51190568 - MIR SINE MIR 0 262 161 537 272 60 32 chr11 97593442 97593659 -51189813 + MIR SINE MIR 20 242 -20 943 222 82 90 chr11 97593712 97594055 -51189417 + MER2 DNA MER2_type 2 341 -3 209 362 9 29 chr11 97594073 97594178 -51189294 + MIR SINE MIR 86 188 -74 2186 125 0 0 chr11 97594182 97594494 -51188978 + AluSx SINE Alu 1 312 0 23 0 0 0 chr11 97595100 97595123 -51188349 + AT_rich Low_complexity Low_complexity 1 23 0 33 25 0 0 chr11 97595249 97595289 -51188183 + AT_rich Low_complexity Low_complexity 1 40 0 31301 48 8 1 chr11 97596440 97600420 -51183052 + L1P LINE L1 1237 5248 -898 7021 53 5 2 chr11 97600527 97601495 -51181977 + L1PA4 LINE L1 5186 6152 -3 189 327 48 93 chr11 97601844 97602199 -51181273 + L2 LINE L2 1331 1669 -1645 414 185 46 23 chr11 97602209 97602408 -51181064 + (TTATA)n Simple_repeat Simple_repeat 1 203 0 183 306 123 35 chr11 97602429 97602599 -51180873 + L2 LINE L2 2804 2988 -284 1096 265 115 2 chr11 97603147 97603547 -51179925 + MER110A LTR ERV1 24 468 0 208 319 64 50 chr11 97603732 97603873 -51179599 + L2 LINE L2 3011 3153 -160 457 331 135 21 chr11 97604162 97604540 -51178932 + LTR16C LTR ERVL 2 422 -69 24 0 0 0 chr11 97605059 97605083 -51178389 + AT_rich Low_complexity Low_complexity 1 24 0 1297 293 88 30 chr11 97606074 97606610 -51176862 + MLT1G LTR MaLR 23 589 -1 243 357 40 24 chr11 97606751 97606845 -51176627 - MIR SINE MIR -112 150 52 252 0 0 0 chr11 97606845 97606873 -51176599 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 243 357 40 24 chr11 97606873 97606904 -51176568 - MIR SINE MIR -210 52 23 206 309 0 0 chr11 97607164 97607206 -51176266 + L2 LINE L2 3210 3251 -21 351 303 42 8 chr11 97607495 97607614 -51175858 - MIR SINE MIR -79 183 61 22 70 0 0 chr11 97609730 97609773 -51173699 + AT_rich Low_complexity Low_complexity 1 43 0 378 42 0 0 chr11 97611016 97611064 -51172408 + (CA)n Simple_repeat Simple_repeat 2 49 0 646 260 140 106 chr11 97611475 97611545 -51171927 - MLT1F LTR MaLR 0 542 476 2271 102 0 3 chr11 97611545 97611849 -51171623 - AluSg SINE Alu -7 303 1 646 260 140 106 chr11 97611849 97611973 -51171499 - MLT1F LTR MaLR -66 476 358 2126 78 0 0 chr11 97611973 97612289 -51171183 - L1PA8 LINE L1 0 6172 5872 646 260 140 106 chr11 97612289 97612613 -51170859 - MLT1F LTR MaLR -184 358 5 207 250 48 48 chr11 97613141 97613225 -51170247 - L3 LINE CR1 -901 676 593 218 330 21 21 chr11 97613227 97613321 -51170151 + MIR SINE MIR 71 164 -98 339 322 103 21 chr11 97613404 97613637 -51169835 - MIR SINE MIR 0 262 11 499 318 46 23 chr11 97613698 97613959 -51169513 + MLT1L LTR MaLR 1 267 -348 2903 322 81 29 chr11 97614307 97615929 -51167543 - L2 LINE L2 0 3313 1623 4212 272 45 34 chr11 97616503 97618093 -51165379 + L1ME1 LINE L1 16 1597 -4945 5665 231 19 3 chr11 97618093 97619256 -51164216 - ERVL LTR ERVL -2561 3203 2022 1641 301 22 25 chr11 97619262 97619899 -51163573 - ERVL LTR ERVL -4975 701 56 1935 138 28 3 chr11 97619899 97620190 -51163282 - AluSx SINE Alu -12 300 3 1641 301 22 25 chr11 97620190 97620243 -51163229 - ERVL LTR ERVL -5620 56 4 1509 272 141 24 chr11 97620252 97621295 -51162177 + L1ME1 LINE L1 2663 3827 -2817 * 4258 230 91 39 chr11 97621273 97622754 -51160718 + L1ME1 LINE L1 4034 5651 -1025 1975 113 0 14 chr11 97622754 97623037 -51160435 + AluSg SINE Alu 32 310 0 4258 230 91 39 chr11 97623037 97623603 -51159869 + L1ME1 LINE L1 5651 6187 -489 615 276 9 56 chr11 97623644 97623876 -51159596 + MER58A DNA MER1_type 1 221 -3 21 0 0 0 chr11 97625794 97625815 -51157657 + AT_rich Low_complexity Low_complexity 1 21 0 1981 125 4 0 chr11 97626478 97626791 -51156681 + AluSx SINE Alu 1 314 0 763 253 0 0 chr11 97627424 97627586 -51155886 + FAM SINE Alu 5 166 -9 22 80 0 0 chr11 97627589 97627639 -51155833 + AT_rich Low_complexity Low_complexity 1 50 0 2233 190 16 19 chr11 97627698 97628125 -51155347 - MSTB LTR MaLR 0 426 1 1567 234 77 34 chr11 97628177 97628332 -51155140 + L1ME1 LINE L1 6175 6322 -342 2456 70 0 0 chr11 97628332 97628634 -51154838 + AluY SINE Alu 8 309 -2 1567 234 77 34 chr11 97628634 97628943 -51154529 + L1ME1 LINE L1 6322 6659 -5 2301 82 3 0 chr11 97629550 97629855 -51153617 - AluY SINE Alu -5 306 1 740 279 77 60 chr11 97631748 97632150 -51151322 - MLT1I LTR MaLR 0 409 1 194 375 113 0 chr11 97633012 97633092 -51150380 + L2 LINE L2 3134 3222 -50 31 0 0 0 chr11 97633106 97633137 -51150335 + AT_rich Low_complexity Low_complexity 1 31 0 906 303 46 8 chr11 97633231 97633492 -51149980 + MLT1I LTR MaLR 139 409 0 1389 203 3 43 chr11 97634530 97634830 -51148642 + AluJo SINE Alu 1 288 -24 392 280 42 28 chr11 97636757 97636900 -51146572 - L3b LINE CR1 -241 1342 1198 1797 191 20 73 chr11 97638765 97639085 -51144387 + MER47B DNA MER2_type 1 293 -2030 2184 63 17 17 chr11 97639085 97639386 -51144086 + AluY SINE Alu 1 301 -10 1797 191 20 73 chr11 97639386 97639506 -51143966 + MER47B DNA MER2_type 293 418 0 3598 156 38 6 chr11 97639840 97640475 -51142997 - MER4D LTR ERV1 -246 657 3 38 39 0 0 chr11 97640557 97640609 -51142863 + AT_rich Low_complexity Low_complexity 1 52 0 256 303 11 67 chr11 97641348 97641437 -51142035 - L2 LINE L2 -2 3270 3187 3659 117 15 0 chr11 97641457 97642003 -51141469 + MER41A LTR ERV1 1 554 0 314 288 78 13 chr11 97642221 97642374 -51141098 + L1MC/D LINE L1 5425 5587 -655 995 204 0 0 chr11 97642375 97642551 -51140921 - AluSc SINE Alu -12 297 122 26 0 0 0 chr11 97642556 97642582 -51140890 + AT_rich Low_complexity Low_complexity 1 26 0 192 217 0 0 chr11 97642619 97642665 -51140807 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 224 398 11 68 chr11 97644264 97644409 -51139063 + MER5A DNA MER1_type 11 146 -43 2084 86 0 4 chr11 97644409 97644677 -51138795 + AluY SINE Alu 38 304 -7 224 398 11 68 chr11 97644677 97644707 -51138765 + MER5A DNA MER1_type 146 176 -13 194 91 30 0 chr11 97644876 97644909 -51138563 + (TA)n Simple_repeat Simple_repeat 2 35 0 745 345 31 21 chr11 97644925 97645250 -51138222 + Zaphod DNA AcHobo 12 339 -3692 226 240 20 0 chr11 97645375 97645425 -51138047 - MER7A DNA MER2_type 0 346 296 421 176 49 19 chr11 97645542 97645645 -51137827 - MER7A DNA MER2_type -240 106 1 346 345 27 0 chr11 97645797 97645945 -51137527 + Zaphod DNA AcHobo 3879 4030 -1 1646 174 61 28 chr11 97646168 97646531 -51136941 - THE1C LTR MaLR 0 375 1 423 235 42 25 chr11 97646746 97646865 -51136607 + LTR28 LTR ERV1 900 1020 0 5515 192 48 45 chr11 97646980 97648665 -51134807 + HUERS-P2 LTR ERV1 75 3088 0 1281 228 105 101 chr11 97648665 97649599 -51133873 + LTR1B LTR ERV1 1 1020 0 202 312 126 45 chr11 97649705 97649904 -51133568 - L2 LINE L2 -338 2976 2762 189 183 19 39 chr11 97649932 97650036 -51133436 + (TA)n Simple_repeat Simple_repeat 1 102 0 659 255 67 57 chr11 97650043 97650233 -51133239 - L1ME2 LINE L1 -21 6143 5957 924 211 4 48 chr11 97650233 97650461 -51133011 - MER20 DNA MER1_type -1 218 1 659 255 67 57 chr11 97650461 97650642 -51132830 - L1ME2 LINE L1 -207 5957 5768 389 263 44 31 chr11 97650705 97650933 -51132539 - L1MEc LINE L1 -5487 909 679 409 250 55 16 chr11 97652117 97652245 -51131227 - MIR SINE MIR -50 212 80 1697 166 19 7 chr11 97652525 97652833 -51130639 + AluSx SINE Alu 1 312 0 2269 107 0 3 chr11 97653871 97654179 -51129293 - AluSg SINE Alu -3 307 1 184 336 150 58 chr11 97654630 97654856 -51128616 - MIR SINE MIR -14 248 2 960 252 28 12 chr11 97655522 97655772 -51127700 + MLT1A1 LTR MaLR 102 355 -10 281 89 22 0 chr11 97656342 97656387 -51127085 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 185 389 103 10 chr11 97657026 97657229 -51126243 + MIR SINE MIR 7 228 -34 1224 218 0 23 chr11 97657670 97657932 -51125540 + AluJb SINE Alu 3 258 -54 259 200 12 50 chr11 97657948 97658028 -51125444 + L1ME4a LINE L1 5992 6068 -53 243 399 44 16 chr11 97658029 97658212 -51125260 + MIR SINE MIR 8 195 -67 1846 139 17 13 chr11 97658509 97658995 -51124477 + AluSq SINE Alu 1 313 0 553 193 234 0 chr11 97659628 97659782 -51123690 - MLT1D LTR MaLR 0 505 371 415 244 38 129 chr11 97660293 97660633 -51122839 - L2 LINE L2 0 3313 3005 340 269 34 63 chr11 97660685 97660860 -51122612 + L2 LINE L2 3144 3313 0 27 49 0 0 chr11 97661230 97661271 -51122201 + AT_rich Low_complexity Low_complexity 1 41 0 24 0 0 0 chr11 97661735 97661759 -51121713 + AT_rich Low_complexity Low_complexity 1 24 0 2059 115 3 0 chr11 97662166 97662453 -51121019 - AluY SINE Alu -21 290 3 513 191 91 0 chr11 97662463 97662573 -51120899 - Charlie5 DNA MER1_type -2492 120 1 298 385 80 13 chr11 97662589 97662815 -51120657 + L3 LINE CR1 1141 1381 -196 205 381 19 10 chr11 97663015 97663134 -51120338 + MER5A DNA MER1_type 63 178 0 1961 233 59 6 chr11 97664676 97665152 -51118320 + MLT1D LTR MaLR 3 503 -2 39 0 0 0 chr11 97667541 97667580 -51115892 + AT_rich Low_complexity Low_complexity 1 39 0 198 318 48 48 chr11 97668587 97668713 -51114759 - L2 LINE L2 0 3313 3188 357 259 122 8 chr11 97668729 97668860 -51114612 + MIR SINE MIR 111 256 -6 201 403 48 0 chr11 97668973 97669097 -51114375 + L2 LINE L2 3141 3270 -2 1238 215 51 4 chr11 97669169 97669443 -51114029 + AluJo SINE Alu 5 291 -11 29 0 0 0 chr11 97670080 97670109 -51113363 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr11 97671063 97671088 -51112384 + AT_rich Low_complexity Low_complexity 1 25 0 965 309 43 17 chr11 97671213 97671631 -51111841 + L1MCb LINE L1 5 433 -5612 1612 260 56 40 chr11 97671846 97672398 -51111074 + L1MCb LINE L1 570 1112 -5387 2249 219 3 47 chr11 97672398 97672977 -51110495 + MER41C LTR ERV1 1 554 0 1612 260 56 40 chr11 97672977 97673278 -51110194 + L1MCb LINE L1 1112 1453 -5046 1889 144 31 0 chr11 97673278 97673570 -51109902 + AluSx SINE Alu 1 301 -11 1612 260 56 40 chr11 97673570 97673771 -51109701 + L1MCb LINE L1 1453 1649 -4850 1527 152 74 0 chr11 97673776 97674072 -51109400 + LTR24C LTR ERV1 3 320 -315 1639 264 61 15 chr11 97674074 97674958 -51108514 + L1MCb LINE L1 2297 3223 -3341 1515 240 41 27 chr11 97674957 97675445 -51108027 + L1M4 LINE L1 2585 3079 -3067 * 4700 177 19 8 chr11 97675449 97676503 -51106969 + L1PA13 LINE L1 1486 2563 -4234 7623 182 3 23 chr11 97676504 97678872 -51104600 + L1PA13 LINE L1 4435 6809 -5 654 220 92 61 chr11 97678911 97679238 -51104234 + L1MCb LINE L1 3226 3562 -3002 411 21 0 0 chr11 97679239 97679287 -51104185 + (AAATG)n Simple_repeat Simple_repeat 2 49 0 1842 95 0 23 chr11 97679290 97679553 -51103919 + AluY SINE Alu 55 311 0 1648 141 36 74 chr11 97679727 97680117 -51103355 + THE1C LTR MaLR 1 375 0 285 146 10 146 chr11 97680226 97680329 -51103143 + MER69 DNA AcHobo 2434 2522 -4 182 322 119 42 chr11 97681198 97681434 -51102038 - L3 LINE CR1 -7 1570 1317 462 342 53 59 chr11 97681598 97682362 -51101110 + L2 LINE L2 2557 3313 0 2165 120 7 0 chr11 97682959 97683260 -51100212 + AluSg SINE Alu 1 303 -7 5978 104 6 5 chr11 97683260 97684105 -51099367 + L1PA10 LINE L1 5322 6167 -1 1709 241 56 6 chr11 97684138 97684286 -51099186 - L1 LINE L1 -1053 5093 4954 180 0 0 0 chr11 97684286 97684306 -51099166 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1709 241 56 6 chr11 97684306 97684856 -51098616 - L1 LINE L1 -1192 4954 4328 7478 30 9 9 chr11 97684918 97685901 -51097571 - L1PA4 LINE L1 0 6155 5177 610 105 11 0 chr11 97685908 97686003 -51097469 - L1P LINE L1 -3327 2819 2724 * 2653 76 8 3 chr11 97685997 97686367 -51097105 + L1PA7 LINE L1 1345 1716 -4745 1898 108 0 0 chr11 97686368 97686618 -51096854 + AluSq SINE Alu 50 299 -14 14346 84 7 15 chr11 97686618 97689472 -51094000 + L1PA7 LINE L1 3609 6430 -39 7453 199 26 16 chr11 97689572 97691958 -51091514 + L1MA7 LINE L1 3692 6110 -181 1194 223 77 31 chr11 97691958 97692285 -51091187 - MER2 DNA MER2_type -2 342 1 7453 199 26 16 chr11 97692285 97692469 -51091003 + L1MA7 LINE L1 6110 6291 0 378 276 95 4 chr11 97692460 97692703 -51090769 + L1 LINE L1 3127 3391 -2755 * 868 274 8 4 chr11 97692706 97692965 -51090507 + L1MC3 LINE L1 7342 7601 -184 27 29 0 0 chr11 97693018 97693052 -51090420 + AT_rich Low_complexity Low_complexity 1 34 0 34 24 0 0 chr11 97693921 97693962 -51089510 + AT_rich Low_complexity Low_complexity 1 41 0 42303 33 22 2 chr11 97693962 97699993 -51083479 - L1HS LINE L1 0 6155 1 2297 69 0 0 chr11 97700513 97700816 -51082656 - L1P LINE L1 -1454 4692 4390 34630 47 5 0 chr11 97700816 97705364 -51078108 + L1PA3 LINE L1 981 5548 -607 726 32 0 0 chr11 97705364 97705459 -51078013 + AluYb8 SINE Alu 223 317 -1 4867 34 0 7 chr11 97705459 97706080 -51077392 + L1PA3 LINE L1 5554 6170 0 2427 219 122 5 chr11 97706081 97706678 -51076794 + L1 LINE L1 4261 4964 -1182 180 0 0 0 chr11 97706678 97706698 -51076774 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2427 219 122 5 chr11 97706698 97706846 -51076626 + L1 LINE L1 4964 5093 -1053 6664 134 8 57 chr11 97706879 97707755 -51075717 - L1PA10 LINE L1 -1 6167 5249 2307 95 0 3 chr11 97707755 97708060 -51075412 - AluY SINE Alu -7 304 1 6664 134 8 57 chr11 97708060 97708256 -51075216 - L1PA10 LINE L1 -919 5249 5045 1857 166 0 10 chr11 97708256 97708570 -51074902 - AluSx SINE Alu 0 312 2 6664 134 8 57 chr11 97708570 97709563 -51073909 - L1PA10 LINE L1 -1123 5045 4193 1879 300 36 26 chr11 97709597 97710050 -51073422 - L1M3b LINE L1 -4543 1738 1271 1939 158 0 0 chr11 97710050 97710361 -51073111 - AluSq SINE Alu 0 311 1 1879 300 36 26 chr11 97710361 97710707 -51072765 - L1M3b LINE L1 -5010 1271 930 760 307 81 49 chr11 97711518 97711925 -51071547 - ERVL LTR ERVL -2293 3471 3052 1732 168 24 13 chr11 97711960 97712258 -51071214 + AluSx SINE Alu 6 306 -6 346 322 119 0 chr11 97712700 97712818 -51070654 + L2 LINE L2 3180 3311 -2 221 299 94 51 chr11 97713322 97713439 -51070033 + L2 LINE L2 3191 3312 -1 571 318 68 29 chr11 97714089 97714397 -51069075 - L2 LINE L2 0 3313 2994 362 291 74 20 chr11 97715147 97715487 -51067985 + L1ME2 LINE L1 179 578 -5627 326 318 157 19 chr11 97715504 97715982 -51067490 + L1ME2 LINE L1 1371 1914 -4482 779 278 86 40 chr11 97716061 97716643 -51066829 + L1ME2 LINE L1 3349 3957 -2258 * 4376 199 33 25 chr11 97716630 97718031 -51065441 + L1MA7 LINE L1 4873 6291 0 562 290 90 7 chr11 97718030 97718309 -51065163 + L1ME2 LINE L1 3945 4246 -1969 * 2122 227 62 21 chr11 97718316 97718978 -51064494 + L1ME2 LINE L1 5327 6015 -218 494 289 12 40 chr11 97719063 97719236 -51064236 + MER63A DNA MER1_type 38 205 -5 256 294 71 0 chr11 97719240 97719366 -51064106 + L1ME2 LINE L1 6080 6214 -19 28 0 0 0 chr11 97719743 97719771 -51063701 + AT_rich Low_complexity Low_complexity 1 28 0 1354 267 95 21 chr11 97719962 97720427 -51063045 - MLT1D LTR MaLR -6 499 1 24 0 0 0 chr11 97721014 97721038 -51062434 + AT_rich Low_complexity Low_complexity 1 24 0 223 217 17 17 chr11 97721321 97721381 -51062091 + GA-rich Low_complexity Low_complexity 4 63 0 24 0 0 0 chr11 97721610 97721634 -51061838 + AT_rich Low_complexity Low_complexity 1 24 0 1713 175 24 0 chr11 97722657 97722954 -51060518 - AluSx SINE Alu -8 304 1 7392 34 9 0 chr11 97722993 97724415 -51059057 - L1PA4 LINE L1 -3 6152 4724 24 32 0 0 chr11 97724428 97724459 -51059013 + AT_rich Low_complexity Low_complexity 1 31 0 228 295 93 16 chr11 97726130 97726259 -51057213 + MIR SINE MIR 118 256 -6 1768 247 84 38 chr11 97726552 97727586 -51055886 + L1ME1 LINE L1 799 2032 -4394 1476 211 7 10 chr11 97727586 97727875 -51055597 - AluJb SINE Alu -24 288 1 1768 247 84 38 chr11 97727875 97728404 -51055068 + L1ME1 LINE L1 2032 2535 -3891 202 263 70 0 chr11 97728806 97728863 -51054609 + MER91B DNA MER1_type 15 75 -115 403 240 48 0 chr11 97728944 97729048 -51054424 + L1MC3 LINE L1 7379 7487 -298 351 339 25 0 chr11 97729053 97729171 -51054301 - MLT1H1 LTR MaLR -365 190 70 3485 201 113 17 chr11 97729175 97730150 -51053322 + L1MD1 LINE L1 5154 6213 -29 591 219 0 8 chr11 97730155 97730283 -51053189 + FLAM_C SINE Alu 1 127 -6 2366 87 3 0 chr11 97730763 97731061 -51052411 + AluSc SINE Alu 3 301 -8 204 40 0 0 chr11 97732442 97732467 -51051005 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 951 314 68 43 chr11 97733920 97734451 -51049021 - MLT1H1 LTR MaLR -6 549 6 332 273 63 63 chr11 97734480 97734623 -51048849 - MLT1H1-int LTR MaLR -31 1704 1562 1237 191 9 4 chr11 97734726 97734956 -51048516 - LTR57 LTR ERVL -7 404 174 252 184 0 0 chr11 97734956 97735005 -51048467 + (TG)n Simple_repeat Simple_repeat 1 49 0 1100 132 11 0 chr11 97735005 97735187 -51048285 - LTR57 LTR ERVL -227 184 1 25 0 0 0 chr11 97735864 97735889 -51047583 + AT_rich Low_complexity Low_complexity 1 25 0 766 264 62 3 chr11 97736139 97736427 -51047045 + L1ME1 LINE L1 2726 3030 -3396 6303 187 23 21 chr11 97736446 97736950 -51046522 + L1PB4 LINE L1 3884 4385 -1771 216 0 0 0 chr11 97736950 97736974 -51046498 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 6303 187 23 21 chr11 97736974 97737063 -51046409 + L1PB4 LINE L1 4385 4472 -1684 2029 155 19 48 chr11 97737063 97737223 -51046249 + THE1B LTR MaLR 1 164 -200 195 42 0 0 chr11 97737223 97737247 -51046225 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1883 118 0 8 chr11 97737254 97737509 -51045963 - AluSx SINE Alu -59 253 1 2029 155 19 48 chr11 97737509 97737714 -51045758 + THE1B LTR MaLR 170 363 -1 6303 187 23 21 chr11 97737714 97739015 -51044457 + L1PB4 LINE L1 4472 5787 -369 260 172 17 0 chr11 97739047 97739105 -51044367 + (CATATA)n Simple_repeat Simple_repeat 5 63 0 279 88 21 14 chr11 97739128 97739188 -51044284 + L1M2 LINE L1 5781 5838 -336 347 225 25 8 chr11 97739188 97739446 -51044026 + (TA)n Simple_repeat Simple_repeat 1 262 0 1846 165 3 58 chr11 97739449 97739831 -51043641 + L1PB4 LINE L1 5789 6149 -7 1445 238 61 30 chr11 97739832 97740475 -51042997 + L1ME1 LINE L1 3064 3726 -2700 1403 167 0 4 chr11 97740477 97740717 -51042755 + AluY SINE Alu 56 294 -17 33 25 0 0 chr11 97740717 97740757 -51042715 + AT_rich Low_complexity Low_complexity 1 40 0 1927 245 165 13 chr11 97740779 97741823 -51041649 + L1ME1 LINE L1 4435 5636 -790 1939 246 86 26 chr11 97741851 97742492 -51040980 + L1ME1 LINE L1 5760 6438 -8 2187 88 3 25 chr11 97742890 97743208 -51040264 + AluY SINE Alu 1 311 0 14184 96 4 19 chr11 97743407 97746294 -51037178 - L1PA7 LINE L1 -7 6462 3609 1898 108 0 0 chr11 97746294 97746544 -51036928 - AluSq SINE Alu -14 299 50 2653 76 8 3 chr11 97746545 97746915 -51036557 - L1PA7 LINE L1 -4745 1716 1345 762 95 6 142 chr11 97746909 97747011 -51036461 + L1P LINE L1 2724 2796 -3350 * 7507 31 1 4 chr11 97747011 97747995 -51035477 + L1PA4 LINE L1 5177 6155 0 762 95 6 142 chr11 97747995 97748061 -51035411 + L1P LINE L1 2796 2869 -3277 1343 147 72 7 chr11 97748341 97748620 -51034852 - L1MA8 LINE L1 -11 6280 5984 204 302 139 35 chr11 97750021 97750107 -51033365 + L2 LINE L2 3163 3257 -15 31 26 0 0 chr11 97750516 97750554 -51032918 + AT_rich Low_complexity Low_complexity 1 38 0 950 242 92 11 chr11 97750554 97750913 -51032559 - LTR37A LTR ERV1 0 426 39 333 354 56 49 chr11 97751993 97752621 -51030851 + L1MEc LINE L1 211 842 -5554 207 0 0 0 chr11 97752630 97752653 -51030819 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 661 213 0 0 chr11 97752702 97752824 -51030648 + FLAM_C SINE Alu 2 123 -10 1420 212 18 3 chr11 97752847 97753130 -51030342 + AluJo SINE Alu 7 293 -19 297 260 83 10 chr11 97753220 97753412 -51030060 + L1MEc LINE L1 968 1173 -5223 413 138 163 0 chr11 97753425 97753505 -51029967 + THE1C LTR MaLR 1 93 -282 204 364 26 0 chr11 97753685 97753762 -51029710 + MER91A DNA MER1_type 2 80 -116 216 0 0 0 chr11 97754306 97754330 -51029142 + (TA)n Simple_repeat Simple_repeat 2 25 0 441 238 119 7 chr11 97756634 97756785 -51026687 - L1MC4 LINE L1 -311 7731 7564 1430 225 61 15 chr11 97756798 97757194 -51026278 - L1MC3 LINE L1 -12 7773 7360 273 29 0 0 chr11 97757245 97757279 -51026193 + (TG)n Simple_repeat Simple_repeat 1 34 0 225 0 0 0 chr11 97757280 97757305 -51026167 + (T)n Simple_repeat Simple_repeat 1 25 0 572 266 12 23 chr11 97757353 97757526 -51025946 + L1MC4 LINE L1 7404 7574 -468 1780 246 119 11 chr11 97757646 97758260 -51025212 - L1MC4 LINE L1 -649 7393 6714 1615 218 0 29 chr11 97758282 97758658 -51024814 + MLT1A1 LTR MaLR 1 365 0 634 175 38 14 chr11 97758668 97758831 -51024641 + L1MC4 LINE L1 7029 7268 -633 794 264 103 37 chr11 97758851 97759336 -51024136 - L1MC4 LINE L1 -1206 6602 6170 1541 200 11 0 chr11 97759502 97759782 -51023690 - AluJb SINE Alu -29 283 1 181 313 50 25 chr11 97760331 97760411 -51023061 + L3b LINE CR1 1300 1381 -202 277 337 71 10 chr11 97760412 97760510 -51022962 - MIR3 SINE MIR -13 195 92 25 0 0 0 chr11 97760870 97760895 -51022577 + AT_rich Low_complexity Low_complexity 1 25 0 313 341 7 37 chr11 97760969 97761104 -51022368 + MIR SINE MIR 97 227 -35 237 355 58 29 chr11 97761174 97761312 -51022160 + MIR SINE MIR 39 180 -82 14148 59 18 6 chr11 97761312 97763215 -51020257 - L1PA5 LINE L1 -2245 3901 1975 11278 65 3 1 chr11 97763215 97765491 -51017981 + L1PA5 LINE L1 3891 6154 0 2052 136 22 30 chr11 97766039 97766406 -51017066 - THE1B LTR MaLR 0 364 1 1874 158 3 3 chr11 97767003 97767306 -51016166 + AluSx SINE Alu 1 303 -9 326 326 104 7 chr11 97767308 97767452 -51016020 + L2 LINE L2 3151 3308 -5 2032 135 7 0 chr11 97767650 97767938 -51015534 - AluSc SINE Alu -19 290 1 462 342 53 59 chr11 97768535 97769299 -51014173 - L2 LINE L2 0 3313 2557 182 322 119 42 chr11 97769463 97769699 -51013773 + L3 LINE CR1 1317 1570 -7 285 146 10 146 chr11 97770569 97770672 -51012800 - MER69 DNA AcHobo -4 2522 2434 1678 141 36 72 chr11 97770781 97771170 -51012302 - THE1C LTR MaLR 0 375 1 350 328 83 36 chr11 97771230 97771422 -51012050 - MIR SINE MIR -56 206 6 25 51 0 0 chr11 97771775 97771814 -51011658 + AT_rich Low_complexity Low_complexity 1 39 0 627 327 40 9 chr11 97773384 97773610 -51009862 + MIR SINE MIR 28 260 -2 202 259 17 17 chr11 97776799 97776857 -51006615 - L2 LINE L2 -5 3267 3210 283 333 0 11 chr11 97777989 97778079 -51005393 - MIR SINE MIR -24 238 150 220 229 16 16 chr11 97778111 97778172 -51005300 - MIR SINE MIR -200 62 2 304 284 32 0 chr11 97778812 97778907 -51004565 + MIR SINE MIR 92 189 -73 5331 22 0 0 chr11 97778917 97779539 -51003933 - L1PA4 LINE L1 -176 5979 5358 1226 40 7 0 chr11 97779539 97779691 -51003781 + L1PA4 LINE L1 5995 6147 -8 447 368 34 13 chr11 97779801 97780040 -51003432 - MIR SINE MIR 0 262 19 28 79 0 0 chr11 97780182 97780245 -51003227 + AT_rich Low_complexity Low_complexity 1 63 0 5976 152 57 22 chr11 97781273 97782462 -51001010 + Tigger3b DNA MER2_type 1 1231 0 201 132 0 0 chr11 97783867 97783905 -50999567 + (TG)n Simple_repeat Simple_repeat 2 39 0 499 294 66 25 chr11 97784139 97784336 -50999136 + L2 LINE L2 3101 3305 -8 204 179 0 0 chr11 97786499 97786538 -50996934 + (CA)n Simple_repeat Simple_repeat 1 39 0 204 57 0 94 chr11 97786549 97786602 -50996870 + (CATATA)n Simple_repeat Simple_repeat 1 48 0 310 50 0 0 chr11 97786603 97786643 -50996829 + MADE1 DNA Mariner 37 76 -4 29 28 0 0 chr11 97786643 97786679 -50996793 + AT_rich Low_complexity Low_complexity 1 36 0 330 251 25 43 chr11 97787992 97788155 -50995317 - L1M4c LINE L1 -4765 1619 1460 277 170 0 0 chr11 97788156 97788203 -50995269 + THE1-int LTR MaLR 203 249 -1331 * 6312 219 24 7 chr11 97788186 97789498 -50993974 + MSTA-int LTR MaLR 312 1645 -6 1643 175 175 6 chr11 97789507 97789873 -50993599 + MSTA LTR MaLR 1 428 0 909 224 48 19 chr11 97789873 97790226 -50993246 + L1MC1 LINE L1 2178 2582 -3886 3366 216 90 23 chr11 97790236 97790826 -50992646 + L1MC1 LINE L1 4931 5480 -1089 2134 111 7 13 chr11 97790826 97791132 -50992340 + AluSg SINE Alu 1 304 -6 3366 216 90 23 chr11 97791132 97791856 -50991616 + L1MC1 LINE L1 5480 6342 -227 340 228 89 0 chr11 97792340 97792441 -50991031 + MER5C DNA MER1_type 208 317 -7 189 107 0 0 chr11 97794208 97794236 -50989236 + (TA)n Simple_repeat Simple_repeat 1 28 0 252 215 0 43 chr11 97794239 97794332 -50989140 + L1MC4 LINE L1 6614 6702 -1340 300 222 0 0 chr11 97794333 97794405 -50989067 + (TATG)n Simple_repeat Simple_repeat 4 75 0 238 275 0 22 chr11 97794405 97794496 -50988976 - L1MC4 LINE L1 -1339 6703 6615 * 256 250 44 15 chr11 97794479 97794610 -50988862 + L1MC4 LINE L1 2006 6983 -1339 21 0 0 0 chr11 97796435 97796456 -50987016 + AT_rich Low_complexity Low_complexity 1 21 0 1583 228 19 34 chr11 97796459 97796837 -50986635 + MLT1B LTR MaLR 1 372 -18 2480 189 17 142 chr11 97796845 97797022 -50986450 - MER4E LTR ERV1 -7 772 575 2032 150 49 0 chr11 97797022 97797369 -50986103 + THE1B LTR MaLR 1 364 0 2480 189 17 142 chr11 97797369 97798073 -50985399 - MER4E LTR ERV1 -204 575 1 326 248 120 0 chr11 97798117 97798271 -50985201 + L1ME3 LINE L1 5631 5806 -325 685 270 21 83 chr11 97798292 97798618 -50984854 - LTR41 LTR ERVL -6 767 462 9433 158 32 13 chr11 97798647 97800297 -50983175 + Tigger1 DNA MER2_type 737 2418 0 35 24 0 0 chr11 97800500 97800542 -50982930 + AT_rich Low_complexity Low_complexity 1 42 0 463 171 0 17 chr11 97800790 97800907 -50982565 + CT-rich Low_complexity Low_complexity 2 116 0 602 201 48 104 chr11 97800921 97801167 -50982305 - MLT1E2 LTR MaLR -264 241 4 3421 262 94 57 chr11 97801174 97802754 -50980718 - L1M4 LINE L1 -1189 4957 3264 2344 97 0 0 chr11 97802754 97803065 -50980407 - AluY SINE Alu 0 311 1 3421 262 94 57 chr11 97803065 97803767 -50979705 - L1M4 LINE L1 -2882 3264 2590 368 261 171 24 chr11 97803763 97803974 -50979498 + L1ME3 LINE L1 5912 6153 -9 * 301 154 62 15 chr11 97804550 97804615 -50978857 - HsTC2 DNA Tc2 -104 1794 1727 396 254 9 0 chr11 97804619 97804733 -50978739 - L1MC3 LINE L1 -2 7783 7669 250 339 60 24 chr11 97805178 97805346 -50978126 - LTR67 LTR ERVL -378 179 6 1637 172 26 0 chr11 97805570 97805838 -50977634 - AluSx SINE Alu -36 276 2 481 345 112 23 chr11 97806128 97806522 -50976950 + MLT1K LTR MaLR 160 588 0 234 62 0 0 chr11 97806957 97806989 -50976483 + (TG)n Simple_repeat Simple_repeat 2 33 0 387 286 0 20 chr11 97808349 97808447 -50975025 - L2 LINE L2 -8 3305 3210 870 238 115 12 chr11 97808473 97808725 -50974747 - LTR16C LTR ERVL 0 491 214 349 342 118 0 chr11 97809003 97809155 -50974317 - L2 LINE L2 -252 3061 2892 262 240 0 0 chr11 97809159 97809209 -50974263 - MER5B DNA MER1_type -125 53 4 1751 298 86 86 chr11 97809256 97810205 -50973267 - L2 LINE L2 -430 2884 1936 338 221 13 0 chr11 97810205 97810282 -50973190 - MER116 DNA Mariner -2 78 1 1751 298 86 86 chr11 97810282 97810430 -50973042 - L2 LINE L2 -1378 1936 1784 811 49 0 0 chr11 97810430 97810532 -50972940 - L1PA4 LINE L1 -5 6150 6049 1751 298 86 86 chr11 97810532 97810554 -50972918 - L2 LINE L2 -1529 1785 1764 186 71 0 0 chr11 97810963 97810991 -50972481 + (T)n Simple_repeat Simple_repeat 1 28 0 273 303 45 66 chr11 97811631 97811829 -50971643 - MIR3 SINE MIR -1 207 14 1872 75 12 0 chr11 97814031 97814283 -50969189 - L1PA5 LINE L1 -8 6146 5892 21 57 0 0 chr11 97815648 97815683 -50967789 + AT_rich Low_complexity Low_complexity 1 35 0 1214 285 14 14 chr11 97815862 97816220 -50967252 + L1M4c LINE L1 31 388 -5996 810 189 8 60 chr11 97816285 97816534 -50966938 + L1MB4 LINE L1 5096 5331 -815 7491 200 57 24 chr11 97816534 97816658 -50966814 + L1MA7 LINE L1 3313 3431 -2860 1764 114 92 7 chr11 97816658 97816939 -50966533 + AluSx SINE Alu 1 305 -7 7491 200 57 24 chr11 97816939 97817335 -50966137 + L1MA7 LINE L1 3431 3812 -2479 1243 215 139 3 chr11 97817335 97817688 -50965784 + MER57A LTR ERV1 1 401 -2 7491 200 57 24 chr11 97817688 97819486 -50963986 + L1MA7 LINE L1 3812 5719 -572 1204 92 18 6 chr11 97819487 97819651 -50963821 + AluSq SINE Alu 1 166 -147 684 144 32 0 chr11 97819763 97819888 -50963584 + AluSq SINE Alu 164 292 -21 2643 171 17 42 chr11 97819893 97820488 -50962984 + L1MA7 LINE L1 5712 6291 0 3395 213 41 12 chr11 97820488 97821325 -50962147 + L1MB4 LINE L1 5315 6175 -5 2773 262 20 42 chr11 97821597 97822453 -50961019 + L1M4 LINE L1 77 913 -5629 598 218 42 45 chr11 97822459 97822715 -50960757 + L1M4 LINE L1 4737 4993 -1651 3417 163 46 51 chr11 97822793 97823572 -50959900 - L1MA6 LINE L1 -5 6295 5521 766 233 76 40 chr11 97823566 97823867 -50959605 + L1M4 LINE L1 5099 5410 -1234 * 187 271 144 51 chr11 97824033 97824151 -50959321 - L2 LINE L2 -3086 228 100 286 318 31 114 chr11 97824311 97824698 -50958774 + L2 LINE L2 2918 3272 0 369 313 15 0 chr11 97825121 97825252 -50958220 - L1P LINE L1 -3504 2642 2510 * 1267 231 24 21 chr11 97825245 97825617 -50957855 + L1 LINE L1 4128 4500 -1646 192 77 0 0 chr11 97827821 97827847 -50955625 + (CA)n Simple_repeat Simple_repeat 2 27 0 253 289 0 12 chr11 97827847 97827930 -50955542 - L1MC4 LINE L1 -1347 6695 6614 942 110 11 22 chr11 97827937 97828119 -50955353 + (TA)n Simple_repeat Simple_repeat 1 180 0 5598 167 22 14 chr11 97828313 97828989 -50954483 + L1PA16 LINE L1 4507 5176 -990 180 0 0 0 chr11 97828989 97829009 -50954463 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 5598 167 22 14 chr11 97829009 97829969 -50953503 + L1PA16 LINE L1 5176 6157 -9 183 279 89 38 chr11 97830906 97830985 -50952487 + MIR SINE MIR 86 168 -94 587 232 119 24 chr11 97831059 97831227 -50952245 - MER5A DNA MER1_type 0 189 6 208 350 75 33 chr11 97831260 97831380 -50952092 + MIR SINE MIR 28 152 -56 26 0 0 0 chr11 97831746 97831772 -50951700 + AT_rich Low_complexity Low_complexity 1 26 0 193 355 29 22 chr11 97832849 97832987 -50950485 - L2 LINE L2 -740 2574 2436 1433 222 122 21 chr11 97833020 97833435 -50950037 + MLT2B1 LTR ERVL 4 466 -54 195 42 0 0 chr11 97833435 97833459 -50950013 + (TC)n Simple_repeat Simple_repeat 1 24 0 1433 222 122 21 chr11 97833459 97833476 -50949996 + MLT2B1 LTR ERVL 466 480 -40 336 248 0 0 chr11 97833476 97833577 -50949895 + (TA)n Simple_repeat Simple_repeat 1 101 0 1977 192 9 0 chr11 97833772 97834111 -50949361 + MER7A DNA MER2_type 2 341 -5 263 143 0 18 chr11 97834140 97834196 -50949276 + (TA)n Simple_repeat Simple_repeat 1 55 0 229 98 0 0 chr11 97834203 97834244 -50949228 - LTR66 LTR ERVL -172 438 398 203 224 20 0 chr11 97836015 97836064 -50947408 + (TA)n Simple_repeat Simple_repeat 2 51 0 1979 158 27 3 chr11 97836258 97836588 -50946884 + MER7A DNA MER2_type 10 345 -1 263 303 34 11 chr11 97836591 97836680 -50946792 + MIR SINE MIR 90 180 -82 321 26 0 0 chr11 97836686 97836724 -50946748 + (TC)n Simple_repeat Simple_repeat 1 38 0 29 28 0 0 chr11 97837536 97837572 -50945900 + AT_rich Low_complexity Low_complexity 1 36 0 180 278 28 69 chr11 97838164 97838236 -50945236 + L2 LINE L2 3173 3241 -31 182 310 29 86 chr11 97838264 97838361 -50945111 + L2 LINE L2 2224 2308 -1006 488 148 269 0 chr11 97838361 97838510 -50944962 - MER53 DNA DNA 0 189 1 182 310 29 86 chr11 97838510 97838586 -50944886 + L2 LINE L2 2308 2387 -927 438 274 46 91 chr11 97838671 97838781 -50944691 + MIR SINE MIR 23 136 -126 1131 250 108 40 chr11 97838781 97839205 -50944267 - MSTB2 LTR MaLR -2 455 3 438 274 46 91 chr11 97839205 97839335 -50944137 + MIR SINE MIR 136 252 -10 26 0 0 0 chr11 97839867 97839893 -50943579 + AT_rich Low_complexity Low_complexity 1 26 0 216 289 145 57 chr11 97839974 97840133 -50943339 - MIR SINE MIR -41 221 49 202 301 60 12 chr11 97840099 97840182 -50943290 + L3 LINE CR1 198 284 -1293 * 1601 186 24 0 chr11 97840196 97840487 -50942985 + AluJo SINE Alu 1 298 -14 183 315 27 14 chr11 97840624 97840697 -50942775 + L3 LINE CR1 426 499 -1078 2971 156 49 12 chr11 97840742 97841249 -50942223 - MER1A DNA MER1_type 0 527 2 741 318 181 4 chr11 97841399 97841884 -50941588 + L3 LINE CR1 728 1298 -279 2298 93 3 3 chr11 97841988 97842288 -50941184 - AluSc SINE Alu -9 300 1 23 33 0 0 chr11 97842662 97842692 -50940780 + AT_rich Low_complexity Low_complexity 1 30 0 291 351 105 0 chr11 97843496 97843667 -50939805 + MIR SINE MIR 61 249 -13 31 0 0 0 chr11 97843885 97843916 -50939556 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr11 97845636 97845659 -50937813 + AT_rich Low_complexity Low_complexity 1 23 0 202 125 0 25 chr11 97845786 97845826 -50937646 + (CAAG)n Simple_repeat Simple_repeat 2 40 0 269 148 0 19 chr11 97845827 97845881 -50937591 + (GGGGA)n Simple_repeat Simple_repeat 5 57 0 206 79 26 26 chr11 97845881 97845919 -50937553 + (GAAA)n Simple_repeat Simple_repeat 2 39 0 7167 46 0 0 chr11 97846049 97847358 -50936114 - L1PA5 LINE L1 -6 6148 4840 27 0 0 0 chr11 97847416 97847443 -50936029 + AT_rich Low_complexity Low_complexity 1 27 0 396 0 0 0 chr11 97848098 97848142 -50935330 + (TG)n Simple_repeat Simple_repeat 2 45 0 23 0 0 0 chr11 97848328 97848351 -50935121 + AT_rich Low_complexity Low_complexity 1 23 0 2299 42 56 3 chr11 97849281 97849569 -50933903 + AluY SINE Alu 1 303 -8 186 103 0 0 chr11 97849921 97849950 -50933522 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 39 0 0 0 chr11 97850457 97850496 -50932976 + AT_rich Low_complexity Low_complexity 1 39 0 330 358 70 37 chr11 97850676 97850827 -50932645 + L1ME4a LINE L1 5511 5656 -465 2337 78 0 19 chr11 97850827 97851134 -50932338 + AluY SINE Alu 1 301 -10 330 358 70 37 chr11 97851134 97851384 -50932088 + L1ME4a LINE L1 5656 5925 -196 503 325 113 45 chr11 97853362 97853766 -50929706 + L2 LINE L2 2338 2790 -524 1328 206 62 24 chr11 97853766 97854139 -50929333 - MLT1B LTR MaLR -3 387 1 503 325 113 45 chr11 97854139 97854285 -50929187 + L2 LINE L2 2790 2925 -389 1663 157 36 9 chr11 97854689 97855026 -50928446 + L1 LINE L1 4321 4666 -1480 368 169 0 0 chr11 97855023 97855082 -50928390 + L1 LINE L1 4909 4967 -1179 * 28 86 0 0 chr11 97856460 97856530 -50926942 + AT_rich Low_complexity Low_complexity 1 70 0 2087 120 153 6 chr11 97856594 97856953 -50926519 - MSTA LTR MaLR -16 412 1 604 24 12 12 chr11 97857122 97857205 -50926267 + (TCTA)n Simple_repeat Simple_repeat 2 84 0 2193 112 26 9 chr11 97857205 97857553 -50925919 - THE1A LTR MaLR -1 354 1 10618 116 11 2 chr11 97857553 97859118 -50924354 - THE1A-int LTR MaLR 0 1580 1 2096 149 8 8 chr11 97859118 97859473 -50923999 - THE1A LTR MaLR 0 355 1 202 317 42 33 chr11 97862101 97862221 -50921251 + MIR SINE MIR 28 148 -114 526 100 0 0 chr11 97862773 97862853 -50920619 + MER53 DNA DNA 13 92 -97 473 156 0 11 chr11 97862777 97862867 -50920605 - MER53 DNA DNA -7 182 94 * 272 409 8 0 chr11 97863022 97863149 -50920323 + L2 LINE L2 2533 2660 -654 652 290 86 22 chr11 97863285 97863554 -50919918 - L2 LINE L2 0 3313 3028 741 209 0 0 chr11 97863737 97863876 -50919596 - MER5A DNA MER1_type -6 183 45 395 301 15 29 chr11 97865730 97865866 -50917606 + MIR SINE MIR 54 187 -75 21 0 0 0 chr11 97867836 97867857 -50915615 + AT_rich Low_complexity Low_complexity 1 21 0 229 289 13 0 chr11 97868030 97868106 -50915366 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 897 44 9 0 chr11 97868889 97869002 -50914470 + L1P LINE L1 4888 5001 -1145 200 0 100 0 chr11 97869002 97869032 -50914440 + T-rich Low_complexity Low_complexity 2 34 0 5831 27 4 0 chr11 97869034 97869730 -50913742 - L1PA4 LINE L1 -3 6152 5454 3299 49 0 0 chr11 97869733 97870143 -50913329 - L1PA4 LINE L1 -1238 4908 4499 278 26 26 0 chr11 97870315 97870354 -50913118 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 258 352 46 26 chr11 97870448 97870616 -50912856 - MIR SINE MIR -72 136 5 429 267 235 28 chr11 97872709 97873167 -50910305 - L2 LINE L2 -4 3309 2717 391 341 107 42 chr11 97873893 97874115 -50909357 + LTR67 LTR ERVL 10 216 -341 1652 180 11 62 chr11 97874115 97874470 -50909002 - MER1B DNA MER1_type 0 337 1 391 341 107 42 chr11 97874470 97874696 -50908776 + LTR67 LTR ERVL 216 487 -70 306 247 13 0 chr11 97874747 97874824 -50908648 + MER58B DNA MER1_type 253 330 -11 265 309 34 87 chr11 97874905 97875054 -50908418 - MIR SINE MIR -119 143 3 351 0 0 0 chr11 97876339 97876378 -50907094 + (TA)n Simple_repeat Simple_repeat 1 39 0 183 42 0 0 chr11 97876977 97877001 -50906471 + (TA)n Simple_repeat Simple_repeat 1 24 0 22 35 0 0 chr11 97877216 97877245 -50906227 + AT_rich Low_complexity Low_complexity 1 29 0 417 20 0 0 chr11 97878416 97878466 -50905006 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 4876 23 1 0 chr11 97878466 97879372 -50904100 - SVA Other Other -954 1363 54 252 0 0 0 chr11 97879372 97879400 -50904072 + (GGGAGA)n Simple_repeat Simple_repeat 4 31 0 234 277 134 18 chr11 97879556 97879668 -50903804 - L1ME LINE L1 -462 5659 5535 225 254 0 0 chr11 97879747 97879802 -50903670 + (TTCA)n Simple_repeat Simple_repeat 4 58 0 575 315 90 49 chr11 97880450 97880984 -50902488 - L1MC4a LINE L1 -1882 5926 5371 13999 129 12 4 chr11 97881219 97884258 -50899214 - L1PA8A LINE L1 -16 6115 3051 6985 132 20 15 chr11 97884283 97885596 -50897876 + L1P LINE L1 1742 3062 -3084 90 55 0 0 chr11 97886102 97886248 -50897224 + AT_rich Low_complexity Low_complexity 1 146 0 1595 127 19 0 chr11 97886975 97887242 -50896230 - L1MA3 LINE L1 -1 6304 6033 293 299 95 0 chr11 97887665 97887812 -50895660 - L1MC4a LINE L1 -2579 3567 3407 41 58 0 0 chr11 97887985 97888054 -50895418 + AT_rich Low_complexity Low_complexity 1 69 0 496 295 97 48 chr11 97888447 97889034 -50894438 - L1ME LINE L1 -835 5311 4696 441 0 0 0 chr11 97889053 97889102 -50894370 + (CA)n Simple_repeat Simple_repeat 2 50 0 2087 139 54 20 chr11 97889753 97890105 -50893367 - THE1B LTR MaLR 0 364 1 277 281 69 73 chr11 97890116 97890553 -50892919 - L1ME LINE L1 -1603 4543 4109 23 0 0 0 chr11 97890770 97890793 -50892679 + AT_rich Low_complexity Low_complexity 1 23 0 250 272 47 47 chr11 97890864 97891033 -50892439 + L1MEc LINE L1 1288 1456 -4940 5359 181 14 11 chr11 97891527 97892832 -50890640 - L1MA7 LINE L1 0 6291 4985 1745 150 21 3 chr11 97892831 97893171 -50890301 - L1MA7 LINE L1 -1494 4652 4307 * 1967 236 127 19 chr11 97893199 97893847 -50889625 - MER50 LTR ERV1 0 734 17 1672 205 101 3 chr11 97893971 97894347 -50889125 + MSTB LTR MaLR 1 413 -13 233 316 116 11 chr11 97895466 97895561 -50887911 + MIR SINE MIR 44 148 -60 260 294 192 20 chr11 97895574 97895720 -50887752 - MIR SINE MIR -44 218 48 884 282 121 41 chr11 97896020 97897136 -50886336 + L1MC4 LINE L1 77 1306 -4774 788 280 146 24 chr11 97897138 97897516 -50885956 + L1MC4 LINE L1 5391 5814 -1928 744 261 126 35 chr11 97897575 97898066 -50885406 + L1MC4 LINE L1 7209 7744 -232 19656 64 14 0 chr11 97998345 98001771 -50781701 + L1PA6 LINE L1 2708 6153 -1 613 145 53 38 chr11 98001782 98001913 -50781559 + L1PB1 LINE L1 5659 5791 -360 189 0 0 0 chr11 98001925 98001946 -50781526 + (TG)n Simple_repeat Simple_repeat 2 22 0 2405 112 6 11 chr11 98001970 98002336 -50781136 + L1PB1 LINE L1 5783 6146 -5 309 366 45 8 chr11 98003197 98003331 -50780141 - L2 LINE L2 -10 3262 3124 23 0 0 0 chr11 98003531 98003554 -50779918 + AT_rich Low_complexity Low_complexity 1 23 0 1294 187 56 130 chr11 98003554 98003945 -50779527 - MLT1A1 LTR MaLR -2 363 2 316 259 56 102 chr11 98004331 98004597 -50778875 + MER112 DNA MER1_type 3 256 -4 239 53 0 26 chr11 98005665 98005703 -50777769 + (TTG)n Simple_repeat Simple_repeat 2 38 0 1817 174 127 38 chr11 98006013 98006485 -50776987 + MLT2B2 LTR ERVL 2 515 0 335 354 51 6 chr11 98006508 98006666 -50776806 + MIR SINE MIR 97 261 -1 514 330 44 5 chr11 98007987 98008144 -50775328 - MIR SINE MIR -21 241 72 7643 23 0 0 chr11 98008144 98009249 -50774223 + L1PA3 LINE L1 5058 6167 0 514 330 44 5 chr11 98009249 98009296 -50774176 - MIR SINE MIR -190 72 28 196 353 82 12 chr11 98010473 98010558 -50772914 + MIR SINE MIR 20 110 -152 705 323 78 51 chr11 98010723 98011199 -50772273 + L2 LINE L2 2527 3016 -297 186 349 72 0 chr11 98011335 98011418 -50772054 + L2 LINE L2 3221 3309 -4 24 32 0 0 chr11 98011639 98011670 -50771802 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr11 98011814 98011849 -50771623 + AT_rich Low_complexity Low_complexity 1 35 0 1461 287 52 24 chr11 98012902 98013902 -50769570 + L1M4 LINE L1 3503 4555 -1591 2026 153 0 0 chr11 98013917 98014224 -50769248 + AluSx SINE Alu 3 309 -3 419 207 0 18 chr11 98014283 98014394 -50769078 + (CATATA)n Simple_repeat Simple_repeat 6 114 0 1469 238 42 6 chr11 98014416 98014769 -50768703 - MLT2D LTR ERVL -46 368 3 808 256 65 25 chr11 98014774 98015098 -50768374 + L1M4 LINE L1 4564 4900 -1246 2197 101 7 0 chr11 98015098 98015396 -50768076 - AluY SINE Alu -11 300 1 415 245 38 57 chr11 98016451 98016610 -50766862 - MIR SINE MIR -11 251 96 732 186 0 8 chr11 98016613 98016742 -50766730 + AluJb SINE Alu 5 132 -180 2509 291 53 15 chr11 98017344 98018796 -50764676 - L1M3b LINE L1 -4812 1469 85 356 269 0 0 chr11 98018788 98018881 -50764591 - L1ME LINE L1 -538 5628 5536 * 2250 168 92 11 chr11 98018960 98019406 -50764066 + LTR64 LTR ERVK 1 482 -76 6196 149 9 13 chr11 98019547 98020907 -50762565 - L1 LINE L1 -3599 3966 2609 4079 226 48 19 chr11 98020909 98021868 -50761604 - L1 LINE L1 -6575 990 4 2039 122 3 7 chr11 98022536 98022830 -50760642 + AluSg SINE Alu 1 293 -17 2077 95 28 3 chr11 98022831 98023164 -50760308 + AluY SINE Alu 1 340 0 279 309 12 0 chr11 98025523 98025604 -50757868 + L2 LINE L2 3231 3312 -1 320 319 30 36 chr11 98025811 98025977 -50757495 - L2 LINE L2 0 3313 3149 251 401 22 0 chr11 98026023 98026160 -50757312 + L2 LINE L2 2446 2585 -729 249 279 101 0 chr11 98026361 98026440 -50757032 + L2 LINE L2 2523 2609 -705 685 291 77 24 chr11 98027574 98028107 -50755365 + L1ME3 LINE L1 4400 4960 -1186 869 295 43 12 chr11 98028294 98028616 -50754856 + L1ME3 LINE L1 5498 5829 -333 2534 50 3 9 chr11 98029042 98029365 -50754107 + L1PA5 LINE L1 5823 6143 -11 404 369 78 14 chr11 98029625 98029918 -50753554 + LTR16C LTR ERVL 89 400 -91 535 202 16 0 chr11 98029925 98030054 -50753418 + CT-rich Low_complexity Low_complexity 3 133 0 225 325 63 40 chr11 98030054 98030180 -50753292 + LTR16C LTR ERVL 363 491 0 380 315 83 11 chr11 98030311 98030492 -50752980 - L2 LINE L2 -343 2971 2778 337 366 60 52 chr11 98030544 98030913 -50752559 - L2 LINE L2 -721 2593 2222 525 229 8 0 chr11 98031097 98031219 -50752253 + MER74A LTR ERVL 299 421 -137 284 296 48 63 chr11 98031629 98031835 -50751637 + L2 LINE L2 3030 3232 -81 204 283 0 0 chr11 98032303 98032356 -50751116 + (TG)n Simple_repeat Simple_repeat 2 54 0 23 0 0 0 chr11 98032575 98032598 -50750874 + AT_rich Low_complexity Low_complexity 1 23 0 229 316 10 0 chr11 98032840 98032926 -50750546 - MIR SINE MIR -65 143 65 246 333 0 0 chr11 98033679 98033757 -50749715 - MIR SINE MIR -12 250 173 219 346 47 19 chr11 98034098 98034205 -50749267 - MIR SINE MIR -80 182 73 294 29 0 0 chr11 98034354 98034389 -50749083 + (CA)n Simple_repeat Simple_repeat 1 35 0 1890 236 100 9 chr11 98036310 98036879 -50746593 - L1ME3A LINE L1 -11 6159 5539 28 48 0 0 chr11 98036954 98036996 -50746476 + AT_rich Low_complexity Low_complexity 1 42 0 202 187 40 40 chr11 98037371 98037446 -50746026 + (TCTA)n Simple_repeat Simple_repeat 3 77 0 278 312 173 17 chr11 98037781 98037954 -50745518 + MIR SINE MIR 19 218 -44 23 78 0 0 chr11 98038324 98038375 -50745097 + AT_rich Low_complexity Low_complexity 1 51 0 276 310 72 78 chr11 98038411 98038485 -50744987 - MLT1I LTR MaLR -26 383 310 1787 167 0 7 chr11 98038485 98038785 -50744687 - AluJo SINE Alu -1 311 14 276 310 72 78 chr11 98038785 98039029 -50744443 - MLT1I LTR MaLR -99 310 67 347 169 0 0 chr11 98039437 98039496 -50743976 - MLT1B LTR MaLR -1 389 331 1078 169 0 0 chr11 98039528 98039706 -50743766 - MLT1B LTR MaLR -205 185 8 21 0 0 0 chr11 98039769 98039790 -50743682 + AT_rich Low_complexity Low_complexity 1 21 0 1968 140 44 47 chr11 98039971 98040336 -50743136 + THE1B LTR MaLR 1 364 0 11130 102 17 0 chr11 98040336 98041889 -50741583 + THE1B-int LTR MaLR 1 1580 0 1988 133 50 44 chr11 98041889 98042251 -50741221 + THE1B LTR MaLR 1 364 0 23 68 0 0 chr11 98042366 98042410 -50741062 + AT_rich Low_complexity Low_complexity 1 44 0 804 169 71 54 chr11 98042784 98042968 -50740504 + L1MC3 LINE L1 5625 5811 -1974 * 3357 34 2 0 chr11 98042961 98043368 -50740104 - L1PA4 LINE L1 -1038 5108 4701 7434 34 3 0 chr11 98043368 98044409 -50739063 + L1PA4 LINE L1 5109 6152 -3 365 107 0 0 chr11 98044411 98044467 -50739005 + L1MC3 LINE L1 5800 5855 -1930 * 3206 207 18 35 chr11 98044464 98044549 -50738923 + L1MC3 LINE L1 6838 6923 -862 1122 58 0 0 chr11 98044549 98044687 -50738785 + MER85 DNA T2_type 1 138 -1 3206 207 18 35 chr11 98044687 98045369 -50738103 + L1MC3 LINE L1 6923 7592 -193 258 325 9 9 chr11 98045894 98046008 -50737464 + (CATA)n Simple_repeat Simple_repeat 3 116 0 25 65 0 0 chr11 98046322 98046368 -50737104 + AT_rich Low_complexity Low_complexity 1 46 0 717 122 0 0 chr11 98046883 98046998 -50736474 + (TTCC)n Simple_repeat Simple_repeat 3 117 0 264 306 64 45 chr11 98048050 98048207 -50735265 + MIR3 SINE MIR 24 183 -25 26 74 0 0 chr11 98048868 98048922 -50734550 + AT_rich Low_complexity Low_complexity 1 54 0 472 355 103 19 chr11 98049266 98049798 -50733674 - L1ME2 LINE L1 -282 5882 5290 34 24 0 0 chr11 98050031 98050072 -50733400 + AT_rich Low_complexity Low_complexity 1 41 0 1541 262 16 7 chr11 98050477 98050927 -50732545 - L1ME2 LINE L1 -1887 4259 3806 210 71 0 0 chr11 98051001 98051029 -50732443 + (A)n Simple_repeat Simple_repeat 1 28 0 263 246 0 0 chr11 98051414 98051471 -50732001 + MER5B DNA MER1_type 119 175 -3 838 225 0 28 chr11 98051485 98051667 -50731805 - MER5A DNA MER1_type 0 189 13 218 411 22 11 chr11 98051829 98052014 -50731458 - MIR SINE MIR -69 193 7 266 282 18 36 chr11 98052023 98052133 -50731339 - MIR SINE MIR -56 206 99 351 221 0 0 chr11 98052287 98052355 -50731117 + MER97a DNA MER1_type? 109 176 -718 4362 216 41 19 chr11 98052442 98053499 -50729973 + Tigger6a DNA MER2_type 3 1082 -1 560 283 148 14 chr11 98053937 98054160 -50729312 + MIR SINE MIR 8 260 -2 238 343 53 60 chr11 98056582 98056847 -50726625 - L2 LINE L2 -615 2699 2437 427 281 9 0 chr11 98057482 98057596 -50725876 + MER5B DNA MER1_type 12 126 -52 207 0 0 0 chr11 98057610 98057633 -50725839 + (GA)n Simple_repeat Simple_repeat 2 24 0 3003 241 96 14 chr11 98057644 98058970 -50724502 + L1PB1 LINE L1 6 1585 -5278 1894 193 139 27 chr11 98058979 98059461 -50724011 + LTR10A LTR ERV1 13 548 -61 13414 196 39 10 chr11 98059475 98061975 -50721497 + L1PB1 LINE L1 1583 4009 -2858 2214 89 0 20 chr11 98061975 98062279 -50721193 + AluY SINE Alu 1 298 -13 13414 196 39 10 chr11 98062279 98063128 -50720344 + L1PB1 LINE L1 4009 4832 -2035 2253 88 30 3 chr11 98063128 98063424 -50720048 + AluY SINE Alu 1 304 -7 13414 196 39 10 chr11 98063424 98065177 -50718295 + L1PB1 LINE L1 4832 6863 -4 25 31 0 0 chr11 98065177 98065209 -50718263 + AT_rich Low_complexity Low_complexity 1 32 0 819 333 28 0 chr11 98065323 98065605 -50717867 - MLT1H1 LTR MaLR -10 545 256 30 27 0 0 chr11 98065857 98065894 -50717578 + AT_rich Low_complexity Low_complexity 1 37 0 767 240 53 128 chr11 98065952 98066187 -50717285 + L1ME2 LINE L1 5646 5897 -437 4021 37 19 2 chr11 98066187 98066669 -50716803 + LTR2B LTR ERV1 1 490 0 767 240 53 128 chr11 98066669 98066986 -50716486 + L1ME2 LINE L1 5897 6319 -15 1265 263 99 47 chr11 98067007 98067600 -50715872 - L1ME3A LINE L1 -90 6080 5457 1432 177 34 2 chr11 98067639 98068659 -50714813 - L1PA15 LINE L1 -1 6815 5676 12329 252 33 19 chr11 98068662 98073415 -50710057 - L1PA15 LINE L1 -1485 5312 1 3231 263 55 38 chr11 98073417 98074026 -50709446 - L1ME LINE L1 -687 5479 4882 300 53 0 0 chr11 98074026 98074064 -50709408 + (TG)n Simple_repeat Simple_repeat 2 39 0 3231 263 55 38 chr11 98074064 98074932 -50708540 - L1ME LINE L1 -1284 4882 3981 633 289 6 0 chr11 98074946 98075112 -50708360 - MLT1F LTR MaLR -18 524 358 22 56 0 0 chr11 98075117 98075153 -50708319 + AT_rich Low_complexity Low_complexity 1 36 0 903 161 19 0 chr11 98075171 98075326 -50708146 + AluSg/x SINE Alu 150 307 -3 5626 116 22 6 chr11 98075407 98076513 -50706959 + L1PA13 LINE L1 5036 6157 -6 590 231 39 29 chr11 98076513 98076721 -50706751 + L1ME LINE L1 4809 5018 -1128 2248 168 92 11 chr11 98076828 98077274 -50706198 - LTR64 LTR ERVK -76 482 1 365 269 0 0 chr11 98077353 98077446 -50706026 + L1ME LINE L1 5536 5628 -538 * 2541 302 50 11 chr11 98077438 98078890 -50704582 + L1M3b LINE L1 85 1469 -4812 723 186 0 8 chr11 98079492 98079621 -50703851 - AluJb SINE Alu -180 132 5 426 245 38 57 chr11 98079624 98079783 -50703689 + MIR SINE MIR 96 251 -11 2435 68 0 10 chr11 98080838 98081147 -50702325 + AluY SINE Alu 1 306 -5 299 336 18 36 chr11 98081251 98081361 -50702111 - MIR3 SINE MIR -92 116 9 21 36 0 0 chr11 98081641 98081669 -50701803 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 98082095 98082116 -50701356 + AT_rich Low_complexity Low_complexity 1 21 0 318 297 63 27 chr11 98082133 98082244 -50701228 + L2 LINE L2 3199 3313 0 1152 219 60 73 chr11 98082429 98082799 -50700673 - MLT1A1 LTR MaLR 0 365 1 24 32 0 0 chr11 98082946 98082977 -50700495 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr11 98083148 98083176 -50700296 + AT_rich Low_complexity Low_complexity 1 28 0 420 273 102 102 chr11 98083225 98083367 -50700105 + L1MC/D LINE L1 5347 5487 -663 2076 106 25 0 chr11 98083367 98083650 -50699822 + AluSc SINE Alu 1 290 -19 420 273 102 102 chr11 98083650 98083980 -50699492 + L1MC/D LINE L1 5487 5816 -334 33 25 0 0 chr11 98084007 98084047 -50699425 + AT_rich Low_complexity Low_complexity 1 40 0 470 280 107 7 chr11 98084214 98084364 -50699108 - MIR SINE MIR -25 237 73 1232 192 77 59 chr11 98084365 98084652 -50698820 + L1MA9 LINE L1 5875 6172 -140 222 118 0 0 chr11 98084652 98084686 -50698786 + (CA)n Simple_repeat Simple_repeat 1 34 0 1232 192 77 59 chr11 98084686 98084789 -50698683 + L1MA9 LINE L1 6172 6272 -40 25 65 0 0 chr11 98085166 98085212 -50698260 + AT_rich Low_complexity Low_complexity 1 46 0 232 250 66 0 chr11 98085349 98085425 -50698047 - L2 LINE L2 -1 3312 3232 307 332 26 26 chr11 98085581 98085774 -50697698 + L1ME LINE L1 5525 5717 -404 2094 130 0 0 chr11 98086244 98086545 -50696927 + AluSq SINE Alu 1 301 -12 185 355 135 21 chr11 98087032 98087173 -50696299 + L2 LINE L2 3106 3262 -10 1065 86 7 7 chr11 98087827 98087967 -50695505 - AluSq/x SINE Alu -170 143 4 24 32 0 0 chr11 98087970 98088001 -50695471 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr11 98088452 98088477 -50694995 + AT_rich Low_complexity Low_complexity 1 25 0 * 248 204 19 0 chr11 98088464 98088518 -50694954 + (TA)n Simple_repeat Simple_repeat 2 56 0 2434 105 28 25 chr11 98088621 98088984 -50694488 + THE1B LTR MaLR 1 364 0 183 367 33 0 chr11 98089694 98089784 -50693688 + L2 LINE L2 2916 3008 -264 907 251 143 3 chr11 98090019 98090361 -50693111 - MLT1B LTR MaLR 0 390 1 271 324 63 9 chr11 98090470 98090581 -50692891 + L2 LINE L2 3154 3270 -2 3741 268 44 27 chr11 98091561 98093091 -50690381 - L1MEc LINE L1 -4633 1763 39 361 282 36 89 chr11 98093431 98093679 -50689793 - L2 LINE L2 0 3313 3079 1053 236 73 28 chr11 98093873 98094200 -50689272 + MER2 DNA MER2_type 1 342 -2 292 283 169 16 chr11 98094291 98094475 -50688997 - MIR SINE MIR -50 212 1 860 252 18 5 chr11 98094713 98094931 -50688541 + MER58A DNA MER1_type 4 224 0 2134 34 4 8 chr11 98095541 98095807 -50687665 - L1PA5 LINE L1 -1 6153 5889 985 234 130 10 chr11 98095807 98096114 -50687358 - L1MD3 LINE L1 -24 7971 7628 21 0 0 0 chr11 98098523 98098544 -50684928 + AT_rich Low_complexity Low_complexity 1 21 0 2285 61 0 0 chr11 98099234 98099513 -50683959 - AluY SINE Alu -4 307 29 5042 142 14 44 chr11 98099542 98100367 -50683105 - L1PA13 LINE L1 -3 6160 5369 2248 119 3 0 chr11 98100367 98100670 -50682802 - AluSp SINE Alu -9 304 1 5042 142 14 44 chr11 98100670 98101388 -50682084 - L1PA13 LINE L1 -794 5369 4631 2479 275 89 75 chr11 98101395 98102921 -50680551 - L1PA12 LINE L1 -5687 1894 347 429 294 0 0 chr11 98102938 98103057 -50680415 - L1PA12 LINE L1 -7462 119 1 210 299 45 15 chr11 98103733 98103800 -50679672 + MIR SINE MIR 28 96 -112 387 222 82 70 chr11 98104044 98104215 -50679257 + MLT1F LTR MaLR 366 538 -4 1958 139 52 27 chr11 98104560 98104926 -50678546 + THE1C LTR MaLR 1 375 0 9301 154 4 42 chr11 98104928 98106360 -50677112 + THE1B-int LTR MaLR 3 1367 -213 2204 133 19 27 chr11 98106360 98106727 -50676745 + THE1B LTR MaLR 1 364 0 9301 154 4 42 chr11 98106727 98106933 -50676539 + THE1B-int LTR MaLR 1367 1579 -1 1015 176 185 46 chr11 98106934 98107094 -50676378 + THE1C LTR MaLR 1 137 -238 180 0 0 0 chr11 98107094 98107114 -50676358 + (TC)n Simple_repeat Simple_repeat 1 20 0 1015 176 185 46 chr11 98107114 98107282 -50676190 + THE1C LTR MaLR 137 375 0 21 36 0 0 chr11 98108021 98108049 -50675423 + AT_rich Low_complexity Low_complexity 1 28 0 189 175 0 0 chr11 98108213 98108253 -50675219 + T-rich Low_complexity Low_complexity 1 40 0 239 308 138 66 chr11 98108830 98109207 -50674265 - L2 LINE L2 -567 2747 2344 2312 95 3 3 chr11 98110416 98110722 -50672750 + AluSq SINE Alu 1 306 -7 374 275 56 50 chr11 98110926 98111086 -50672386 + MIR SINE MIR 56 216 -46 463 330 34 14 chr11 98111145 98111354 -50672118 + MIR SINE MIR 1 213 -49 321 47 0 0 chr11 98111887 98111930 -50671542 + (CA)n Simple_repeat Simple_repeat 1 43 0 24 53 0 0 chr11 98112819 98112857 -50670615 + AT_rich Low_complexity Low_complexity 1 38 0 307 24 0 0 chr11 98113162 98113203 -50670269 - L1MA6 LINE L1 -1 6299 6259 287 194 75 0 chr11 98113214 98113281 -50670191 - L1MA5 LINE L1 -155 6145 6074 21 0 0 0 chr11 98113520 98113541 -50669931 + AT_rich Low_complexity Low_complexity 1 21 0 2015 166 24 16 chr11 98113541 98113836 -50669636 + L1MB2 LINE L1 5688 5988 -183 1939 189 22 52 chr11 98113836 98114281 -50669191 + MSTB1 LTR MaLR 1 432 0 2015 166 24 16 chr11 98114281 98114358 -50669114 + L1MB2 LINE L1 5988 6063 -108 22019 192 24 23 chr11 98114359 98120769 -50662703 + L1PA11 LINE L1 8 6489 0 472 174 41 0 chr11 98120769 98120888 -50662584 + L1MB2 LINE L1 6044 6169 -2 6161 56 31 32 chr11 98123412 98124358 -50659114 + L1PA8A LINE L1 5162 6108 -23 189 0 0 0 chr11 98124358 98124379 -50659093 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 6161 56 31 32 chr11 98124379 98124401 -50659071 + L1PA8A LINE L1 6108 6129 -2 338 311 107 8 chr11 98124656 98124778 -50658694 + L2 LINE L2 3138 3271 -1 230 154 0 0 chr11 98124919 98124958 -50658514 + MARNA DNA Mariner 404 442 -144 641 321 92 12 chr11 98125061 98125388 -50658084 - LTR16A LTR ERVL -97 353 1 198 269 128 13 chr11 98125403 98125481 -50657991 + MIR SINE MIR 176 262 0 327 346 83 10 chr11 98125634 98125839 -50657633 + MIR SINE MIR 21 240 -22 21 0 0 0 chr11 98127005 98127026 -50656446 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 98127437 98127465 -50656007 + AT_rich Low_complexity Low_complexity 1 28 0 2367 68 0 34 chr11 98127810 98128131 -50655341 + AluY SINE Alu 1 310 -1 22 99 0 0 chr11 98128421 98128492 -50654980 + AT_rich Low_complexity Low_complexity 1 71 0 520 229 36 30 chr11 98128590 98128756 -50654716 - L1MC4 LINE L1 -105 7937 7771 436 276 95 25 chr11 98128854 98129097 -50654375 - L1MC4 LINE L1 -570 7472 7213 304 268 169 14 chr11 98129143 98129285 -50654187 - L1MC4 LINE L1 -2219 5589 5426 484 246 57 49 chr11 98129355 98129477 -50653995 - MER63A DNA MER1_type 0 210 88 431 294 29 35 chr11 98130105 98130275 -50653197 - MIR3 SINE MIR -10 198 30 234 153 17 85 chr11 98130458 98130517 -50652955 + MER5B DNA MER1_type 51 105 -73 25 31 0 0 chr11 98130543 98130575 -50652897 + AT_rich Low_complexity Low_complexity 1 32 0 282 224 26 13 chr11 98130576 98130652 -50652820 - L1ME1 LINE L1 -29 6531 6455 1071 250 157 2 chr11 98130664 98131060 -50652412 - L1ME1 LINE L1 -148 6412 5956 2402 129 5 3 chr11 98131062 98131435 -50652037 - L1PB1 LINE L1 -5 6146 5773 10609 199 17 5 chr11 98131474 98134233 -50649239 - L1PB1 LINE L1 -363 5788 2988 2489 118 6 6 chr11 98134233 98134597 -50648875 + THE1B LTR MaLR 1 364 0 10609 199 17 5 chr11 98134597 98134763 -50648709 - L1PB1 LINE L1 -3163 2988 2826 559 144 0 83 chr11 98134765 98134849 -50648623 + L1 LINE L1 2309 2380 -3766 2177 78 7 20 chr11 98134849 98135142 -50648330 + AluY SINE Alu 1 289 -22 559 144 0 83 chr11 98135142 98135189 -50648283 + L1 LINE L1 2380 2429 -3717 276 237 144 58 chr11 98135189 98135328 -50648144 - L1ME1 LINE L1 -587 5973 5823 1510 183 40 105 chr11 98135333 98135705 -50647767 + MER7A DNA MER2_type 1 346 0 2084 227 54 48 chr11 98135705 98136251 -50647221 - L1ME1 LINE L1 -741 5819 5278 2336 67 7 3 chr11 98136251 98136549 -50646923 + AluY SINE Alu 1 299 -12 2084 227 54 48 chr11 98136549 98136873 -50646599 - L1ME1 LINE L1 -1282 5278 4958 1469 238 42 6 chr11 98136878 98137231 -50646241 + MLT2D LTR ERVL 3 368 -46 419 207 0 18 chr11 98137253 98137364 -50646108 + (TATATG)n Simple_repeat Simple_repeat 6 114 0 2026 153 0 0 chr11 98137423 98137730 -50645742 - AluSx SINE Alu -3 309 3 4385 265 87 22 chr11 98137745 98140739 -50642733 - L1ME1 LINE L1 -1591 4949 1749 225 43 0 65 chr11 98140746 98140792 -50642680 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 244 208 0 99 chr11 98140828 98140929 -50642543 - L1ME1 LINE L1 -4940 1600 1510 368 279 70 58 chr11 98140930 98141102 -50642370 - L1ME1 LINE L1 -5059 1484 1311 741 207 41 89 chr11 98141164 98141386 -50642086 + MLT1B LTR MaLR 1 210 -180 2053 221 30 21 chr11 98141386 98142034 -50641438 + LTR27 LTR ERV1 1 710 -141 496 290 246 59 chr11 98142017 98142476 -50640996 + MER52A LTR ERV1 1211 1755 0 * 661 283 23 0 chr11 98142476 98142653 -50640819 + MLT1B LTR MaLR 210 390 0 400 204 106 49 chr11 98142655 98142797 -50640675 - L1ME1 LINE L1 -5374 1166 1017 219 368 26 34 chr11 98145980 98146097 -50637375 - L2 LINE L2 -256 3016 2901 242 256 13 0 chr11 98146124 98146202 -50637270 - L1MC4 LINE L1 -1350 6692 6614 * 270 270 11 11 chr11 98146195 98146284 -50637188 + L1MC4 LINE L1 6615 6703 -1339 240 256 0 33 chr11 98146240 98146330 -50637142 - L1MC4 LINE L1 -1339 6703 6617 * 952 63 337 29 chr11 98146341 98146516 -50636956 - L1P LINE L1 -894 5252 5024 360 0 0 0 chr11 98146516 98146556 -50636916 + (TA)n Simple_repeat Simple_repeat 2 41 0 271 242 11 22 chr11 98146559 98146650 -50636822 + L1MC4 LINE L1 6614 6703 -1339 225 196 0 0 chr11 98146658 98146709 -50636763 + (TA)n Simple_repeat Simple_repeat 2 52 0 5000 135 12 2 chr11 98146745 98147605 -50635867 - L1PA8 LINE L1 -894 5252 4330 6582 87 8 3 chr11 98147608 98148521 -50634951 + L1PA8 LINE L1 5254 6170 -2 2146 106 0 0 chr11 98149109 98149402 -50634070 + AluSg SINE Alu 1 293 -17 489 264 64 0 chr11 98150720 98150860 -50632612 + MER69A DNA AcHobo 26 174 -3 219 247 34 11 chr11 98150863 98150952 -50632520 + (TA)n Simple_repeat Simple_repeat 1 91 0 1114 306 59 61 chr11 98151003 98151997 -50631475 + L2 LINE L2 2330 3313 0 261 143 39 26 chr11 98153101 98153178 -50630294 + (TATAA)n Simple_repeat Simple_repeat 5 82 0 276 330 23 41 chr11 98154053 98154274 -50629198 + L3 LINE CR1 556 772 -805 1691 325 104 33 chr11 98154579 98155836 -50627636 + L2 LINE L2 329 1682 -1632 4029 64 0 0 chr11 98155836 98156352 -50627120 + L1PA8 LINE L1 5654 6169 -3 1691 325 104 33 chr11 98156352 98156381 -50627091 + L2 LINE L2 1682 1707 -1607 1186 242 82 38 chr11 98156421 98156789 -50626683 + MLT1B LTR MaLR 1 384 -6 845 320 43 45 chr11 98156789 98157302 -50626170 + L2 LINE L2 1738 2249 -1065 5701 105 6 0 chr11 98157463 98158373 -50625099 - L1PB1 LINE L1 -1 6150 5237 452 289 87 23 chr11 98158379 98158597 -50624875 - L1MC4 LINE L1 0 8042 7811 * 790 194 115 9 chr11 98158591 98158808 -50624664 - L1MC4 LINE L1 -625 7417 7178 1726 224 13 82 chr11 98158810 98159336 -50624136 + MLT1D LTR MaLR 1 490 -15 239 224 122 127 chr11 98161471 98161716 -50621756 - MLT1K LTR MaLR -17 571 328 211 250 62 0 chr11 98162395 98162443 -50621029 - L2 LINE L2 -78 3194 3144 194 262 60 48 chr11 98162955 98163039 -50620433 - L2 LINE L2 -1152 2162 2078 181 152 61 0 chr11 98163242 98163275 -50620197 + L3 LINE CR1 856 890 -687 * 204 321 151 9 chr11 98163255 98163361 -50620111 + MIR SINE MIR 21 141 -67 182 233 0 0 chr11 98163402 98163432 -50620040 + L2 LINE L2 3263 3292 -21 321 353 0 37 chr11 98164768 98164904 -50618568 - MIR SINE MIR -117 145 15 215 355 96 35 chr11 98165136 98165333 -50618139 + L2 LINE L2 2845 3053 -219 240 111 0 0 chr11 98165592 98165628 -50617844 + (T)n Simple_repeat Simple_repeat 1 36 0 290 281 113 25 chr11 98165653 98165813 -50617659 + MER20B DNA MER1_type 6 179 -604 1124 318 150 39 chr11 98166100 98167108 -50616364 - L2 LINE L2 -242 3030 1911 658 168 56 8 chr11 98167115 98167240 -50616232 - MER39 LTR ERV1 0 707 577 1609 224 31 122 chr11 98167240 98167913 -50615559 + LTR9 LTR ERV1 1 612 0 2414 215 27 39 chr11 98167914 98168353 -50615119 - MER39 LTR ERV1 -128 579 147 4125 66 6 2 chr11 98168353 98168901 -50614571 + L1PA8 LINE L1 5620 6169 -3 2414 215 27 39 chr11 98168901 98169047 -50614425 - MER39 LTR ERV1 -560 147 1 376 341 103 3 chr11 98169229 98169519 -50613953 + L1MEd LINE L1 101 419 -5700 1329 157 13 13 chr11 98169658 98169893 -50613579 - MER44D DNA MER2_type 0 605 316 924 263 62 16 chr11 98169894 98170217 -50613255 + MER2 DNA MER2_type 3 340 -5 1327 237 4 0 chr11 98170245 98170490 -50612982 - MER44D DNA MER2_type -458 247 2 1122 124 6 0 chr11 98170722 98170891 -50612581 + L1PA8 LINE L1 6002 6171 -1 232 330 12 29 chr11 98170918 98171091 -50612381 + L1MEd LINE L1 11 180 -5939 2064 138 16 47 chr11 98171338 98171723 -50611749 + THE1C LTR MaLR 1 373 -2 1039 221 96 47 chr11 98171863 98172248 -50611224 - L1ME2 LINE L1 -1 6163 5760 308 341 8 16 chr11 98172359 98172482 -50610990 + L1 LINE L1 3648 3769 -2377 24 53 0 0 chr11 98172836 98172874 -50610598 + AT_rich Low_complexity Low_complexity 1 38 0 322 297 76 22 chr11 98173377 98173653 -50609819 - L1ME2 LINE L1 -799 5347 5057 519 299 71 25 chr11 98174101 98174298 -50609174 - MIR SINE MIR -44 218 13 28 99 0 0 chr11 98174536 98174627 -50608845 + AT_rich Low_complexity Low_complexity 1 91 0 276 268 49 0 chr11 98174828 98174910 -50608562 + MIR SINE MIR 150 235 -27 2143 129 42 0 chr11 98175073 98175405 -50608067 - THE1C LTR MaLR 0 375 30 181 283 19 0 chr11 98176207 98176260 -50607212 + MIR3 SINE MIR 148 201 -7 207 0 0 0 chr11 98177088 98177111 -50606361 + (TA)n Simple_repeat Simple_repeat 2 24 0 531 0 0 0 chr11 98177150 98177209 -50606263 + (TA)n Simple_repeat Simple_repeat 1 59 0 22 0 0 0 chr11 98177415 98177437 -50606035 + AT_rich Low_complexity Low_complexity 1 22 0 434 266 108 14 chr11 98177452 98177591 -50605881 + L2 LINE L2 3160 3311 -2 463 351 68 0 chr11 98177744 98177935 -50605537 - MIR SINE MIR -14 248 45 697 281 31 22 chr11 98178265 98178489 -50604983 + MLT1H LTR MaLR 2 227 -322 256 243 0 110 chr11 98178632 98178768 -50604704 + MLT1H LTR MaLR 424 544 -5 321 26 0 0 chr11 98178863 98178901 -50604571 + (CA)n Simple_repeat Simple_repeat 1 38 0 227 242 182 23 chr11 98179940 98180072 -50603400 - MIR SINE MIR -76 186 34 1063 25 0 0 chr11 98180273 98180395 -50603077 + AluYb8 SINE Alu 195 316 -2 702 202 11 79 chr11 98180948 98181126 -50602346 - MER5A DNA MER1_type -23 166 1 2045 164 16 11 chr11 98181236 98181609 -50601863 + THE1C LTR MaLR 1 375 0 207 0 0 0 chr11 98183694 98183717 -50599755 + (TA)n Simple_repeat Simple_repeat 1 23 0 1724 167 3 3 chr11 98183717 98183999 -50599473 - AluJb SINE Alu -17 295 14 530 86 12 0 chr11 98184015 98184096 -50599376 + (TA)n Simple_repeat Simple_repeat 2 83 0 500 268 78 15 chr11 98184249 98184454 -50599018 + MLT1I LTR MaLR 4 221 -188 384 366 43 5 chr11 98186016 98186229 -50597243 - MIR SINE MIR -14 248 30 3254 190 76 36 chr11 98187390 98188477 -50594995 + L1MB1 LINE L1 5016 6149 -19 452 272 107 24 chr11 98188804 98188973 -50594499 - MIR SINE MIR -14 248 66 1725 42 0 14 chr11 98188974 98189189 -50594283 - L1P2 LINE L1 -499 5656 5445 1338 52 35 0 chr11 98189164 98189336 -50594136 + L1PA4 LINE L1 5975 6152 -3 * 26 23 0 23 chr11 98189336 98189355 -50594117 + AT_rich Low_complexity Low_complexity 1 19 -24 2297 87 3 3 chr11 98189355 98189666 -50593806 + AluY SINE Alu 1 311 0 26 23 0 23 chr11 98189666 98189690 -50593782 + AT_rich Low_complexity Low_complexity 19 43 0 212 290 101 0 chr11 98189702 98189771 -50593701 - MIR SINE MIR -184 78 3 405 325 104 14 chr11 98192121 98192434 -50591038 - L2 LINE L2 -274 3039 2698 331 218 5 31 chr11 98192444 98192561 -50590911 - L1MC5 LINE L1 -1 8041 7832 40 37 0 0 chr11 98192577 98192631 -50590841 + AT_rich Low_complexity Low_complexity 1 54 0 1966 145 0 0 chr11 98192631 98192913 -50590559 - AluJb SINE Alu -26 286 5 432 317 105 41 chr11 98192915 98193354 -50590118 - L1MC5 LINE L1 -177 7784 7318 460 314 13 22 chr11 98193516 98193745 -50589727 - L1MC5 LINE L1 -741 7220 6994 243 61 0 0 chr11 98193763 98193796 -50589676 + (TC)n Simple_repeat Simple_repeat 2 34 0 363 44 0 0 chr11 98193798 98193843 -50589629 + (CA)n Simple_repeat Simple_repeat 2 46 0 925 316 114 38 chr11 98193876 98194992 -50588480 - L1MC4a LINE L1 -824 6984 5784 1014 290 118 5 chr11 98195037 98195437 -50588035 - L2 LINE L2 -637 2677 2233 277 312 115 25 chr11 98195517 98195674 -50587798 + MIR SINE MIR 51 221 -41 297 0 0 0 chr11 98196455 98196488 -50586984 + (TG)n Simple_repeat Simple_repeat 2 34 0 272 261 191 9 chr11 98196529 98196644 -50586828 - MIR3 SINE MIR -66 142 7 196 297 110 76 chr11 98196839 98196957 -50586515 - MIR SINE MIR -118 144 23 196 370 101 19 chr11 98197998 98198206 -50585266 + MIR SINE MIR 7 231 -31 205 281 12 61 chr11 98198488 98198570 -50584902 + MIR SINE MIR 77 154 -108 1898 164 57 11 chr11 98199333 98199704 -50583768 - MLT1B LTR MaLR 0 390 3 369 251 100 80 chr11 98200029 98200268 -50583204 - L2 LINE L2 -1 3312 3069 386 314 9 0 chr11 98200268 98200373 -50583099 + MER81 DNA DNA 1 106 -8 1383 317 54 14 chr11 98200388 98201012 -50582460 - L2 LINE L2 -245 3068 2419 972 308 43 96 chr11 98201115 98201835 -50581637 - L2 LINE L2 -1736 1578 897 7522 32 6 0 chr11 98202416 98203758 -50579714 + L1PA3 LINE L1 4806 6152 -3 23 0 0 0 chr11 98203758 98203781 -50579691 + AT_rich Low_complexity Low_complexity 1 23 0 2341 66 0 14 chr11 98204171 98204482 -50578990 + AluY SINE Alu 1 307 0 429 145 13 0 chr11 98205708 98205784 -50577688 + L1PA7 LINE L1 6070 6146 -8 180 352 66 33 chr11 98205998 98206089 -50577383 + MIR SINE MIR 47 140 -122 * 581 327 65 5 chr11 98206080 98206297 -50577175 + MIR SINE MIR 32 261 -1 21 36 0 0 chr11 98206380 98206408 -50577064 + AT_rich Low_complexity Low_complexity 1 28 0 11781 216 43 34 chr11 98206408 98208272 -50575200 - L1PB3 LINE L1 -2 6868 5021 189 0 0 0 chr11 98208272 98208293 -50575179 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 11781 216 43 34 chr11 98208293 98212261 -50571211 - L1PB3 LINE L1 -1849 5021 864 368 280 0 21 chr11 98212262 98212355 -50571117 - L1MC4 LINE L1 -1339 6703 6613 4454 256 45 40 chr11 98212396 98214204 -50569268 - L1PB3 LINE L1 -5219 1644 3 3218 227 81 15 chr11 98216053 98217152 -50566320 - L1MB8 LINE L1 0 6178 4969 2235 56 0 21 chr11 98217152 98217462 -50566010 - AluY SINE Alu 0 304 1 3218 227 81 15 chr11 98217462 98217666 -50565806 - L1MB8 LINE L1 -1209 4969 4780 223 161 36 0 chr11 98217682 98217738 -50565734 + (TA)n Simple_repeat Simple_repeat 2 59 0 1850 244 60 11 chr11 98217814 98218433 -50565039 - L1MB8 LINE L1 -1350 4796 4148 1433 230 46 39 chr11 98218495 98218908 -50564564 + MLT1C LTR MaLR 52 467 0 4454 215 42 86 chr11 98218908 98220337 -50563135 + MLT1C-int LTR MaLR 1 1366 -5 237 183 0 0 chr11 98221029 98221089 -50562383 + (CA)n Simple_repeat Simple_repeat 1 60 0 311 0 26 0 chr11 98221300 98221339 -50562133 + (CA)n Simple_repeat Simple_repeat 2 41 0 262 336 192 0 chr11 98221536 98221661 -50561811 + L2 LINE L2 3119 3267 -5 27 0 0 0 chr11 98221758 98221785 -50561687 + AT_rich Low_complexity Low_complexity 1 27 0 21 57 0 0 chr11 98221873 98221908 -50561564 + AT_rich Low_complexity Low_complexity 1 35 0 225 0 0 0 chr11 98222150 98222175 -50561297 + (T)n Simple_repeat Simple_repeat 1 25 0 316 224 147 26 chr11 98223975 98224091 -50559381 + MIR SINE MIR 63 192 -70 231 0 77 0 chr11 98224174 98224213 -50559259 + A-rich Low_complexity Low_complexity 6 47 0 443 315 78 35 chr11 98225733 98225965 -50557507 + MIR SINE MIR 13 254 -8 2537 103 30 0 chr11 98226297 98226694 -50556778 + L1P5 LINE L1 5270 5678 -473 * 18747 108 7 7 chr11 98226685 98229413 -50554059 + L1P LINE L1 16 2741 -3405 266 242 76 0 chr11 98230225 98230291 -50553181 + MIR SINE MIR 154 224 -38 373 307 71 31 chr11 98232462 98232619 -50550853 - MLT1J2 LTR MaLR -206 244 74 1560 232 126 11 chr11 98232619 98233071 -50550401 - MLT1D LTR MaLR -1 504 1 373 307 71 31 chr11 98233071 98233138 -50550334 - MLT1J2 LTR MaLR -376 74 11 397 313 91 15 chr11 98233232 98233430 -50550042 - MIR SINE MIR -49 213 1 395 272 32 57 chr11 98234585 98234743 -50548729 + MIR SINE MIR 48 201 -61 2890 3 0 0 chr11 98235255 98235570 -50547902 + AluYb8 SINE Alu 1 315 -3 322 323 88 42 chr11 98235841 98236033 -50547439 - L3 LINE CR1 -8 1569 1369 22 0 0 0 chr11 98236033 98236055 -50547417 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr11 98236778 98236808 -50546664 + AT_rich Low_complexity Low_complexity 1 30 0 2238 195 128 25 chr11 98236992 98237619 -50545853 - L1MB8 LINE L1 -6 6983 6293 1362 155 136 31 chr11 98237654 98238008 -50545464 - L1MA8 LINE L1 -22 6269 5879 * 3307 245 65 32 chr11 98238006 98238358 -50545114 - L1MB8 LINE L1 -689 6300 5961 2067 188 49 7 chr11 98238358 98238767 -50544705 - MSTB LTR MaLR 0 426 1 3307 245 65 32 chr11 98238767 98239757 -50543715 - L1MB8 LINE L1 -1028 5961 4833 354 269 34 17 chr11 98239759 98239878 -50543594 - L1MB8 LINE L1 -2911 4046 3926 2115 234 52 42 chr11 98239900 98240932 -50542540 - L1MB8 LINE L1 -3302 3655 2639 489 197 68 0 chr11 98241061 98241178 -50542294 - L1MB8 LINE L1 -6648 211 87 279 347 35 28 chr11 98241618 98241762 -50541710 - L3 LINE CR1 -352 1225 1081 244 219 9 105 chr11 98242632 98242746 -50540726 - MIR SINE MIR -26 236 134 1320 108 54 0 chr11 98242932 98243149 -50540323 + L1PA10 LINE L1 5939 6169 -5 434 319 144 18 chr11 98244687 98244916 -50538556 - MIR SINE MIR 0 262 5 22 0 0 0 chr11 98244932 98244954 -50538518 + AT_rich Low_complexity Low_complexity 1 22 0 305 293 120 8 chr11 98245382 98245641 -50537831 - L1MEc LINE L1 -3525 4040 3753 258 323 78 27 chr11 98245719 98246131 -50537341 - L1MEc LINE L1 -4086 3660 3228 305 357 27 21 chr11 98246155 98246473 -50536999 - L1M1 LINE L1 -4275 3291 2785 257 102 0 41 chr11 98246523 98246572 -50536900 - L1ME3A LINE L1 0 6170 6124 256 282 148 31 chr11 98246580 98246966 -50536506 - L1MEc LINE L1 -4935 2811 2381 21 0 0 0 chr11 98247143 98247164 -50536308 + AT_rich Low_complexity Low_complexity 1 21 0 1192 246 46 12 chr11 98247656 98247985 -50535487 - MER58B DNA MER1_type -1 340 1 22 70 0 0 chr11 98248403 98248446 -50535026 + AT_rich Low_complexity Low_complexity 1 43 0 1656 194 3 3 chr11 98248627 98248931 -50534541 + AluJb SINE Alu 1 304 -8 189 276 35 35 chr11 98249641 98249699 -50533773 - L2 LINE L2 -5 3267 3210 303 128 21 0 chr11 98249699 98249746 -50533726 - MLT2D LTR ERVL 0 414 367 255 122 0 0 chr11 98249753 98249802 -50533670 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 225 250 0 14 chr11 98249810 98249882 -50533590 + L1MC4 LINE L1 6648 6718 -1324 1954 165 13 52 chr11 98249945 98250326 -50533146 - MLT2D LTR ERVL -48 366 1 251 250 0 0 chr11 98250335 98250383 -50533089 - L2 LINE L2 -79 3193 3146 192 388 0 0 chr11 98250421 98250506 -50532966 + MIR SINE MIR 172 256 -6 762 272 64 0 chr11 98250639 98250841 -50532631 - MIR SINE MIR -13 249 35 409 350 17 30 chr11 98250925 98251162 -50532310 + L2 LINE L2 3079 3312 -1 1652 234 6 3 chr11 98251625 98251989 -50531483 - MLT1A1 LTR MaLR 0 365 1 189 0 0 0 chr11 98252794 98252815 -50530657 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1553 164 0 8 chr11 98254202 98254458 -50529014 - AluJb SINE Alu -20 292 39 24 85 0 0 chr11 98255769 98255828 -50527644 + AT_rich Low_complexity Low_complexity 1 59 0 28 48 0 0 chr11 98255841 98255883 -50527589 + AT_rich Low_complexity Low_complexity 1 42 0 301 354 144 12 chr11 98255990 98256323 -50527149 - L1ME4a LINE L1 -239 5882 5506 26 0 0 0 chr11 98256600 98256626 -50526846 + AT_rich Low_complexity Low_complexity 1 26 0 241 159 43 0 chr11 98256626 98256695 -50526777 + (TA)n Simple_repeat Simple_repeat 1 72 0 532 327 73 68 chr11 98256696 98256805 -50526667 + L1MC/D LINE L1 3414 3521 -2625 2060 103 0 20 chr11 98256805 98257107 -50526365 + AluY SINE Alu 1 296 -15 532 327 73 68 chr11 98257107 98257900 -50525572 + L1MC/D LINE L1 3521 4321 -1825 2285 46 3 0 chr11 98258415 98258700 -50524772 - L1PA5 LINE L1 0 6154 5869 327 358 40 0 chr11 98258719 98258892 -50524580 + L1MC/D LINE L1 5424 5603 -2205 251 241 0 138 chr11 98259573 98259689 -50523783 + MER58 DNA MER1_type 1 100 -2320 509 202 10 19 chr11 98259699 98259803 -50523669 + MER58 DNA MER1_type 2318 2420 0 994 149 5 40 chr11 98260227 98260428 -50523044 - MSTB-int LTR MaLR -1457 194 1 2103 180 64 5 chr11 98260441 98260829 -50522643 - MSTB LTR MaLR -15 411 1 225 0 0 0 chr11 98261334 98261359 -50522113 + (TG)n Simple_repeat Simple_repeat 1 25 0 394 327 109 12 chr11 98262239 98262404 -50521068 + MER5A DNA MER1_type 9 189 0 1549 272 252 19 chr11 98262658 98263431 -50520041 - L1MC4a LINE L1 -258 7550 6598 234 156 0 0 chr11 98263476 98263521 -50519951 + LTR66 LTR ERVL 394 438 -172 285 183 0 0 chr11 98263521 98263581 -50519891 + (CA)n Simple_repeat Simple_repeat 1 60 0 482 152 112 88 chr11 98263934 98264059 -50519413 + MER46B DNA MER2_type 1 128 -233 4053 128 114 124 chr11 98264065 98265564 -50517908 - pTR5 LTR ERV1 0 2438 742 1237 163 29 4 chr11 98265583 98265823 -50517649 + MER46B DNA MER2_type 115 235 -1 250 208 56 28 chr11 98265833 98265870 -50517602 + GA-rich Low_complexity Low_complexity 4 38 -39 1158 255 10 39 chr11 98265870 98266278 -50517194 + MLT2C1 LTR ERVL 1 396 -1 250 208 56 28 chr11 98266278 98266312 -50517160 + GA-rich Low_complexity Low_complexity 38 77 0 416 130 0 0 chr11 98266470 98266539 -50516933 + MLT2B3 LTR ERVL 3 71 -483 1777 222 13 29 chr11 98266636 98267017 -50516455 + MLT2B3 LTR ERVL 76 450 -104 2306 148 66 5 chr11 98267017 98267410 -50516062 + MSTB LTR MaLR 1 417 -9 353 143 0 0 chr11 98267414 98267470 -50516002 + MLT2B3 LTR ERVL 446 501 -53 901 68 0 15 chr11 98267485 98267617 -50515855 + (TTC)n Simple_repeat Simple_repeat 1 130 0 234 193 0 35 chr11 98267617 98267674 -50515798 + CT-rich Low_complexity Low_complexity 4 58 0 375 193 0 0 chr11 98267676 98267759 -50515713 + (TA)n Simple_repeat Simple_repeat 2 84 0 22 0 0 0 chr11 98268589 98268611 -50514861 + AT_rich Low_complexity Low_complexity 1 22 0 763 289 141 27 chr11 98271468 98271873 -50511599 - HAL1 LINE L1 -877 1630 1180 438 354 76 53 chr11 98272025 98272683 -50510789 - HAL1 LINE L1 -1520 987 315 11630 84 21 2 chr11 98322721 98324269 -50459203 - HERVL LTR ERVL -2840 2814 1238 388 276 109 25 chr11 98324911 98325150 -50458322 - HAL1 LINE L1 0 2507 2249 276 143 71 18 chr11 98325206 98325318 -50458154 + (TA)n Simple_repeat Simple_repeat 2 119 0 772 176 0 8 chr11 98327014 98327145 -50456327 - FLAM_A SINE Alu -3 130 1 289 228 18 0 chr11 98327146 98327203 -50456269 + MLT1K LTR MaLR 529 586 -2 623 286 79 15 chr11 98327990 98328256 -50455216 + MER102b DNA MER1_type 43 325 -16 327 65 0 0 chr11 98328446 98328492 -50454980 + (TC)n Simple_repeat Simple_repeat 1 46 0 339 44 0 0 chr11 98328492 98328537 -50454935 + (TG)n Simple_repeat Simple_repeat 2 46 0 228 35 0 0 chr11 98328540 98328569 -50454903 + (TC)n Simple_repeat Simple_repeat 2 30 0 369 314 157 15 chr11 98329184 98329388 -50454084 - MIR SINE MIR -24 238 6 341 197 0 28 chr11 98329669 98329740 -50453732 - L1 LINE L1 -2010 4136 4068 2230 113 13 0 chr11 98329772 98330073 -50453399 - AluSx SINE Alu -7 305 1 2076 184 2 30 chr11 98330075 98330504 -50452968 - L1 LINE L1 -2066 4080 3664 * 2443 218 34 29 chr11 98330503 98331078 -50452394 + L1 LINE L1 2344 2924 -3222 1781 74 0 4 chr11 98331078 98331309 -50452163 + AluY SINE Alu 82 311 0 2443 218 34 29 chr11 98331309 98331385 -50452087 + L1 LINE L1 2924 2998 -3148 38 22 0 0 chr11 98331542 98331587 -50451885 + AT_rich Low_complexity Low_complexity 1 45 0 237 203 29 14 chr11 98331791 98331860 -50451612 - L1ME LINE L1 -259 5862 5793 31 0 0 0 chr11 98332063 98332094 -50451378 + AT_rich Low_complexity Low_complexity 1 31 0 2121 173 36 25 chr11 98332094 98332569 -50450903 - L1MA7 LINE L1 -2 6289 5810 716 151 7 29 chr11 98332613 98332752 -50450720 + L1M2 LINE L1 5663 5798 -502 270 179 28 38 chr11 98332776 98332882 -50450590 + (TA)n Simple_repeat Simple_repeat 2 106 0 22 80 0 0 chr11 98333206 98333256 -50450216 + AT_rich Low_complexity Low_complexity 1 50 0 24 32 0 0 chr11 98333300 98333331 -50450141 + AT_rich Low_complexity Low_complexity 1 31 0 5070 197 21 6 chr11 98333334 98335046 -50448426 - L1MA4 LINE L1 -15 6285 4546 4114 104 2 17 chr11 98335147 98335732 -50447740 + HERVL LTR ERVL 4477 5052 -602 183 327 78 39 chr11 98335733 98335886 -50447586 - L2 LINE L2 -2804 510 352 3119 99 11 5 chr11 98335886 98336329 -50447143 + HERVL-A2 LTR ERVL 5209 5654 0 1091 93 0 0 chr11 98336329 98336479 -50446993 + MLT2A2 LTR ERVL 1 150 -303 3332 100 7 0 chr11 98336480 98336930 -50446542 + MLT2A2 LTR ERVL 1 453 0 215 326 159 38 chr11 98337051 98337232 -50446240 + L2 LINE L2 2266 2424 -890 249 33 0 0 chr11 98337232 98337262 -50446210 + (TC)n Simple_repeat Simple_repeat 1 30 0 215 326 159 38 chr11 98337262 98337518 -50445954 + L2 LINE L2 2424 2823 -491 * 225 239 0 99 chr11 98337508 98337579 -50445893 + L2 LINE L2 3249 3312 -1 286 294 0 28 chr11 98337906 98338015 -50445457 + GA-rich Low_complexity Low_complexity 3 108 0 684 230 7 14 chr11 98338184 98338398 -50445074 + FRAM SINE Alu 1 212 0 1956 139 7 3 chr11 98338762 98339057 -50444415 + AluSx SINE Alu 1 296 -16 517 269 122 39 chr11 98339176 98339455 -50444017 - HAL1 LINE L1 -678 1829 1528 245 339 64 13 chr11 98339431 98339729 -50443743 - HAL1 LINE L1 -1228 1279 967 * 1663 163 40 27 chr11 98339799 98340099 -50443373 - AluSx SINE Alu -8 304 1 252 86 0 0 chr11 98340558 98340593 -50442879 + (CA)n Simple_repeat Simple_repeat 2 36 0 189 0 0 0 chr11 98340592 98340613 -50442859 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 659 265 166 47 chr11 98341577 98342144 -50441328 - LTR50 LTR ERVL 0 795 68 220 278 53 71 chr11 98343244 98343413 -50440059 - L2 LINE L2 -2 3311 3146 321 329 12 0 chr11 98343652 98343734 -50439738 - MIR SINE MIR -179 83 1 194 238 100 50 chr11 98344374 98344454 -50439018 - L2 LINE L2 -7 3306 3223 * 195 338 35 55 chr11 98344450 98344595 -50438877 - L2 LINE L2 -401 2913 2772 202 250 54 54 chr11 98345829 98345921 -50437551 + MIR SINE MIR 12 103 -159 1469 268 108 16 chr11 98345922 98346366 -50437106 + MLT1E LTR MaLR 28 512 -81 1546 243 48 14 chr11 98346467 98346970 -50436502 + L1 LINE L1 3119 3638 -2508 2011 134 3 10 chr11 98347177 98347476 -50435996 - AluSx SINE Alu -13 299 3 416 354 86 15 chr11 98347503 98347828 -50435644 + L1ME4a LINE L1 5491 5838 -283 206 240 0 20 chr11 98347917 98347967 -50435505 + MIR SINE MIR 214 262 0 486 0 0 0 chr11 98348143 98348197 -50435275 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 213 224 20 0 chr11 98349505 98349554 -50433918 + (TATG)n Simple_repeat Simple_repeat 3 52 0 320 347 8 8 chr11 98349632 98349753 -50433719 - MIR SINE MIR -136 126 6 2302 126 38 5 chr11 98350180 98350654 -50432818 - L1PB1 LINE L1 -522 5629 5141 3022 140 16 25 chr11 98350661 98351211 -50432261 + L1PB1 LINE L1 5604 6148 -3 216 269 167 0 chr11 98351235 98351313 -50432159 - L2 LINE L2 -2 3311 3221 913 291 87 25 chr11 98351501 98352055 -50431417 - L2 LINE L2 -204 3109 2529 941 246 19 19 chr11 98353145 98353216 -50430256 - L1PB4 LINE L1 -2 6856 6786 4924 110 1 4 chr11 98353216 98353909 -50429563 + LTR8 LTR ERV1 1 691 0 941 246 19 19 chr11 98353909 98354093 -50429379 - L1PB4 LINE L1 -71 6787 6601 1449 161 88 0 chr11 98354093 98354354 -50429118 - AluSx SINE Alu -12 300 17 3295 186 18 31 chr11 98354365 98355730 -50427742 - L1PB4 LINE L1 -254 6604 5249 7795 256 36 42 chr11 98355749 98357668 -50425804 - L1PB4 LINE L1 -2450 4398 2471 222 0 79 0 chr11 98357668 98357706 -50425766 + T-rich Low_complexity Low_complexity 2 42 0 7795 256 36 42 chr11 98357706 98360201 -50423271 - L1PB4 LINE L1 -4377 2471 8 1596 187 144 3 chr11 98360922 98361297 -50422175 + MSTA LTR MaLR 1 428 0 3686 143 9 11 chr11 98362179 98362752 -50420720 + THE1C-int LTR MaLR 1009 1580 0 1815 138 43 32 chr11 98362754 98363123 -50420349 + THE1C LTR MaLR 3 375 0 292 228 38 0 chr11 98363263 98363342 -50420130 + LTR37B LTR ERV1 3 84 -384 353 384 72 23 chr11 98363783 98364088 -50419384 - L2 LINE L2 -12 3260 2941 319 402 89 19 chr11 98364156 98364527 -50418945 - L2 LINE L2 -470 2844 2448 1548 237 134 29 chr11 98364596 98365187 -50418285 - MLT1E1 LTR MaLR 0 654 2 395 283 301 18 chr11 98365962 98366234 -50417238 - L3b LINE CR1 -37 1546 1198 1228 300 27 56 chr11 98367087 98367705 -50415767 + L1MA7 LINE L1 1217 1843 -4722 2229 295 70 17 chr11 98368183 98369597 -50413875 + L1MA7 LINE L1 2022 3320 -4246 2920 228 64 13 chr11 98369599 98370164 -50413308 + L1MA7 LINE L1 4086 4621 -2944 189 0 0 0 chr11 98370164 98370185 -50413287 + (GA)n Simple_repeat Simple_repeat 2 22 0 2920 228 64 13 chr11 98370185 98370214 -50413258 + L1MA7 LINE L1 4621 4647 -2918 1501 214 3 22 chr11 98370214 98370531 -50412941 + AluJo SINE Alu 1 311 -1 2920 228 64 13 chr11 98370531 98370861 -50412611 + L1MA7 LINE L1 4647 5058 -2507 459 63 0 0 chr11 98370879 98370942 -50412530 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 4162 74 3 23 chr11 98370945 98371514 -50411958 - L1PA7 LINE L1 -21 6133 5576 3804 74 0 1 chr11 98371615 98372368 -50411104 - L1PA7 LINE L1 -563 5609 4858 5823 193 39 20 chr11 98372374 98372415 -50411057 + L1MA7 LINE L1 5066 5105 -2460 182 36 0 36 chr11 98372415 98372443 -50411029 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5823 193 39 20 chr11 98372443 98372908 -50410564 + L1MA7 LINE L1 5105 5560 -2005 351 0 0 0 chr11 98372908 98372947 -50410525 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 5823 193 39 20 chr11 98372947 98373777 -50409695 + L1MA7 LINE L1 5560 6428 -1137 1904 180 36 57 chr11 98373783 98374206 -50409266 + L1MA7 LINE L1 7218 7631 -79 348 24 0 0 chr11 98374206 98374247 -50409225 + (TA)n Simple_repeat Simple_repeat 2 42 0 1904 180 36 57 chr11 98374247 98374296 -50409176 + L1MA7 LINE L1 7631 7680 -30 222 222 0 0 chr11 98374507 98374552 -50408920 + (CATA)n Simple_repeat Simple_repeat 4 48 0 522 290 132 91 chr11 98374563 98375631 -50407841 - L1 LINE L1 -843 5303 4192 495 263 58 0 chr11 98375631 98375768 -50407704 + MIR SINE MIR 116 260 -2 266 339 58 53 chr11 98375989 98376160 -50407312 + MIR SINE MIR 72 243 -19 35 0 0 0 chr11 98376589 98376624 -50406848 + AT_rich Low_complexity Low_complexity 1 35 0 331 365 43 17 chr11 98377248 98377363 -50406109 + L2 LINE L2 3143 3260 -12 439 256 31 31 chr11 98377557 98377686 -50405786 - L3b LINE CR1 -172 1411 1283 369 323 44 46 chr11 98378026 98378265 -50405207 + MIR SINE MIR 2 234 -28 1332 244 74 24 chr11 98379228 98379605 -50403867 + MSTD LTR MaLR 1 396 0 1857 154 5 66 chr11 98380780 98381091 -50402381 - L1 LINE L1 -1880 4266 3980 2303 90 0 0 chr11 98381091 98381402 -50402070 - AluY SINE Alu 0 311 1 1857 154 5 66 chr11 98381402 98381467 -50402005 - L1 LINE L1 -2166 3980 3913 472 243 0 9 chr11 98382764 98382875 -50400597 - AluSg/x SINE Alu -20 292 183 924 73 24 0 chr11 98383156 98383280 -50400192 - AluSq/x SINE Alu -185 127 1 22 0 0 0 chr11 98383805 98383827 -50399645 + AT_rich Low_complexity Low_complexity 1 22 0 2443 78 0 7 chr11 98383890 98384198 -50399274 - AluY SINE Alu -3 308 3 198 331 99 25 chr11 98384554 98384675 -50398797 - L2 LINE L2 -4 3309 3180 351 0 0 0 chr11 98384684 98384723 -50398749 + (CA)n Simple_repeat Simple_repeat 2 40 0 204 267 17 0 chr11 98384888 98384948 -50398524 + CT-rich Low_complexity Low_complexity 1 61 0 21 71 0 0 chr11 98385771 98385813 -50397659 + AT_rich Low_complexity Low_complexity 1 42 0 308 261 139 6 chr11 98386016 98386181 -50397291 - L1ME3A LINE L1 -2 6168 5982 * 362 294 33 33 chr11 98386177 98386330 -50397142 - L1ME3A LINE L1 -546 5624 5472 304 303 109 0 chr11 98386433 98386598 -50396874 + L1ME LINE L1 5635 5817 -345 638 260 29 5 chr11 98386627 98386835 -50396637 - L1ME3A LINE L1 -811 5335 5123 185 283 43 76 chr11 98387385 98387569 -50395903 + L2 LINE L2 2717 2894 -420 21 0 0 0 chr11 98387887 98387908 -50395564 + AT_rich Low_complexity Low_complexity 1 21 0 1966 154 0 0 chr11 98387908 98388201 -50395271 - AluSx SINE Alu -19 293 1 2376 125 10 22 chr11 98388344 98388753 -50394719 - L1PA13 LINE L1 -14 6149 5746 188 264 218 0 chr11 98388775 98388862 -50394610 + L2 LINE L2 3160 3265 -7 206 157 0 20 chr11 98388975 98389026 -50394446 + GA-rich Low_complexity Low_complexity 1 50 0 189 286 111 70 chr11 98389469 98389640 -50393832 - MIR SINE MIR -84 178 1 596 305 37 5 chr11 98389793 98389983 -50393489 - MIR SINE MIR -21 241 46 186 226 24 107 chr11 98390512 98390596 -50392876 + MIR SINE MIR 120 196 -66 187 319 33 44 chr11 98391167 98391258 -50392214 - L2 LINE L2 -3159 155 66 1372 227 104 76 chr11 98392017 98393088 -50390384 - L1MC/D LINE L1 -743 5797 4759 1665 131 4 0 chr11 98393095 98393331 -50390141 + AluSq SINE Alu 1 237 -76 243 0 0 0 chr11 98393434 98393461 -50390011 + (TA)n Simple_repeat Simple_repeat 1 27 0 * 342 0 0 0 chr11 98393460 98393498 -50389974 + (GA)n Simple_repeat Simple_repeat 2 39 0 1895 289 71 14 chr11 98393498 98394438 -50389034 - L1MC/D LINE L1 -2379 4161 3168 375 290 125 6 chr11 98394475 98394651 -50388821 - L1ME3A LINE L1 -13 6157 5961 1282 179 94 38 chr11 98394758 98395076 -50388396 - MER44D DNA MER2_type -3 606 1 1579 223 96 21 chr11 98395126 98395596 -50387876 - L1MDa LINE L1 -3401 3139 2706 2228 73 0 14 chr11 98395596 98395914 -50387558 - AluY SINE Alu 0 314 1 1579 223 96 21 chr11 98395914 98398310 -50385162 - L1MDa LINE L1 -3834 2706 2 21 82 0 0 chr11 98398502 98398551 -50384921 + AT_rich Low_complexity Low_complexity 1 49 0 712 272 32 97 chr11 98399935 98400490 -50382982 + L1MDb LINE L1 772 1290 -5119 14418 101 8 17 chr11 98402735 98404968 -50378504 + L1P3 LINE L1 1 3271 -3190 1723 187 11 55 chr11 98405073 98405437 -50378035 + MLT2B2 LTR ERVL 168 515 0 196 256 0 0 chr11 98406409 98406448 -50377024 + MIR SINE MIR 112 150 -112 564 278 160 0 chr11 98406473 98406660 -50376812 - MIR SINE MIR -43 219 3 15883 30 3 0 chr11 98407209 98409125 -50374347 + L1P LINE L1 3170 5091 -1055 395 323 147 0 chr11 98409333 98409531 -50373941 - MIR SINE MIR -34 228 2 356 0 0 22 chr11 98410182 98410227 -50373245 + (TTTTA)n Simple_repeat Simple_repeat 4 47 0 528 16 0 0 chr11 98410227 98410288 -50373184 - L1PA4 LINE L1 -13 6142 6082 201 74 0 0 chr11 98410669 98410696 -50372776 + (CA)n Simple_repeat Simple_repeat 1 27 0 190 234 21 0 chr11 98411167 98411214 -50372258 - L2 LINE L2 -2 3311 3264 698 262 30 0 chr11 98411282 98411446 -50372026 + MER58A DNA MER1_type 40 208 -16 400 344 11 27 chr11 98411485 98411668 -50371804 - L2 LINE L2 -770 2544 2365 493 313 23 35 chr11 98411726 98411985 -50371487 - L1ME LINE L1 -348 5822 5567 1984 155 7 0 chr11 98411987 98412297 -50371175 + AluSx SINE Alu 1 312 0 226 143 32 0 chr11 98412360 98412423 -50371049 + (TATATG)n Simple_repeat Simple_repeat 5 69 0 330 202 18 92 chr11 98412448 98412557 -50370915 + L1M4 LINE L1 3907 4007 -2139 200 265 44 0 chr11 98412748 98412816 -50370656 + MIR SINE MIR 187 257 -5 554 283 26 7 chr11 98412825 98412977 -50370495 - L2 LINE L2 -598 2716 2562 828 220 79 81 chr11 98413012 98413302 -50370170 - L1MC5 LINE L1 -201 7760 7470 360 0 0 0 chr11 98413302 98413342 -50370130 + (CA)n Simple_repeat Simple_repeat 2 41 0 828 220 79 81 chr11 98413342 98413560 -50369912 - L1MC5 LINE L1 -491 7470 7253 267 279 96 87 chr11 98413698 98414168 -50369304 - HAL1b LINE L1 -808 540 67 335 354 14 41 chr11 98415287 98415434 -50368038 - MIR SINE MIR -110 152 10 24 77 0 0 chr11 98416354 98416406 -50367066 + AT_rich Low_complexity Low_complexity 1 52 0 921 356 97 32 chr11 98417213 98417673 -50365799 + L2 LINE L2 2286 2813 -500 758 196 22 0 chr11 98417673 98417857 -50365615 + MER53 DNA DNA 2 189 0 921 356 97 32 chr11 98417857 98418130 -50365342 + L2 LINE L2 2813 3067 -246 2215 197 36 6 chr11 98418424 98418896 -50364576 + MER66B LTR ERV1 1 486 0 32 0 0 0 chr11 98420632 98420664 -50362808 + AT_rich Low_complexity Low_complexity 1 32 0 373 324 138 9 chr11 98420752 98420962 -50362510 + MIR SINE MIR 20 256 -6 220 376 0 88 chr11 98421759 98421985 -50361487 + L2 LINE L2 3042 3247 -25 460 172 50 0 chr11 98422257 98422356 -50361116 - L1MA3 LINE L1 0 6305 6202 266 62 0 42 chr11 98422350 98422398 -50361074 + L1MA2 LINE L1 6036 6081 -223 * 1988 223 0 0 chr11 98422402 98422837 -50360635 - L1 LINE L1 -848 6717 6283 * 2828 199 24 10 chr11 98422832 98423409 -50360063 - L1 LINE L1 -6017 1548 964 328 284 18 0 chr11 98423511 98423620 -50359852 - L1ME LINE L1 -647 5519 5409 215 371 86 36 chr11 98424128 98424268 -50359204 + L2 LINE L2 3126 3272 0 918 323 131 9 chr11 98424763 98425559 -50357913 + L2 LINE L2 2435 3313 0 797 173 0 0 chr11 98425620 98425753 -50357719 + FLAM_C SINE Alu 1 133 0 273 29 0 0 chr11 98428135 98428169 -50355303 + (CA)n Simple_repeat Simple_repeat 1 34 0 748 292 29 5 chr11 98428540 98428749 -50354723 + MIR SINE MIR 18 231 -31 343 320 92 67 chr11 98428771 98429161 -50354311 - L2 LINE L2 -45 3268 2869 274 183 127 14 chr11 98430255 98430326 -50353146 - L2 LINE L2 0 3313 3235 455 347 77 50 chr11 98430349 98430686 -50352786 - L2 LINE L2 -9 3263 2918 401 317 19 25 chr11 98430755 98430916 -50352556 - MIR SINE MIR -95 167 8 421 283 158 25 chr11 98431666 98432065 -50351407 - L1ME4a LINE L1 -192 5929 5478 222 314 29 73 chr11 98434539 98434676 -50348796 - L2 LINE L2 -4 3309 3179 254 279 63 27 chr11 98434975 98435086 -50348386 + LTR16C LTR ERVL 5 119 -372 26 64 0 0 chr11 98435764 98435811 -50347661 + AT_rich Low_complexity Low_complexity 1 47 0 1696 204 62 16 chr11 98435862 98436235 -50347237 + MER57A LTR ERV1 10 399 -4 856 239 86 78 chr11 98436243 98436628 -50346844 - MER31B LTR ERV1 -37 429 42 402 308 128 58 chr11 98437604 98438134 -50345338 + L1MEd LINE L1 57 623 -5496 35 0 0 0 chr11 98438428 98438463 -50345009 + AT_rich Low_complexity Low_complexity 1 35 0 1079 253 140 9 chr11 98438539 98439002 -50344470 + L1ME2 LINE L1 5631 6154 -10 509 291 96 55 chr11 98439038 98439258 -50344214 - MIR SINE MIR -10 252 24 229 233 33 17 chr11 98439281 98439341 -50344131 + MER5B DNA MER1_type 63 123 -55 513 271 78 20 chr11 98439384 98439628 -50343844 + L1ME3A LINE L1 5683 5940 -230 390 288 34 71 chr11 98440256 98440523 -50342949 - MIR SINE MIR -2 260 4 718 154 24 0 chr11 98441782 98441905 -50341567 - THE1B LTR MaLR 0 364 239 2427 98 38 11 chr11 98441905 98442271 -50341201 + THE1C-int LTR MaLR 1205 1580 0 1746 134 54 29 chr11 98442273 98442587 -50340885 + THE1C LTR MaLR 3 324 -51 2066 133 3 0 chr11 98443592 98443901 -50339571 + AluY SINE Alu 1 310 -1 204 146 24 0 chr11 98444874 98444915 -50338557 + T-rich Low_complexity Low_complexity 3 44 0 812 318 123 4 chr11 98445643 98446090 -50337382 - L2 LINE L2 -19 3294 2801 235 193 167 88 chr11 98446095 98446209 -50337263 + MER63 DNA MER1_type 2 750 -312 287 329 102 12 chr11 98446932 98447099 -50336373 - L2 LINE L2 -261 3011 2830 285 277 62 0 chr11 98447115 98447180 -50336292 - MER91A DNA MER1_type 0 196 128 246 255 0 0 chr11 98447581 98447632 -50335840 - L2 LINE L2 -6 3266 3216 467 201 58 71 chr11 98447892 98448046 -50335426 - MER104 DNA Tc2 0 180 29 2117 76 6 54 chr11 98449463 98449805 -50333667 + AluY SINE Alu 1 311 0 28 48 0 0 chr11 98449868 98449910 -50333562 + AT_rich Low_complexity Low_complexity 1 42 0 2043 181 35 0 chr11 98450918 98451316 -50332156 - L1M1 LINE L1 -6272 1293 882 506 234 85 7 chr11 98451299 98451440 -50332032 - L1M1 LINE L1 -7196 369 218 * 3113 187 30 16 chr11 98451415 98452042 -50331430 - L1M1 LINE L1 -6910 655 20 2109 89 7 4 chr11 98452053 98452369 -50331103 - AluY SINE Alu 0 317 1 247 259 106 12 chr11 98454691 98454776 -50328696 - L2 LINE L2 -1 3271 3179 205 333 51 26 chr11 98455397 98455514 -50327958 + MIR3 SINE MIR 87 206 -2 2402 80 7 0 chr11 98456727 98457026 -50326446 + AluY SINE Alu 1 301 -10 427 261 58 22 chr11 98457121 98457259 -50326213 + MER5A DNA MER1_type 44 186 -3 234 299 92 54 chr11 98457765 98457833 -50325639 - L2 LINE L2 -5 3308 3244 964 212 9 44 chr11 98457833 98458059 -50325413 + MER20 DNA MER1_type 2 219 0 234 299 92 54 chr11 98458059 98458174 -50325298 - L2 LINE L2 -69 3244 3118 1233 180 12 17 chr11 98458461 98458781 -50324691 - MLT1A1 LTR MaLR 0 365 1 349 367 67 8 chr11 98459143 98459383 -50324089 + MLT1K LTR MaLR 237 490 -98 967 196 16 21 chr11 98459827 98460131 -50323341 - MLT1A1 LTR MaLR -16 349 1 371 363 67 8 chr11 98460493 98460733 -50322739 + MLT1K LTR MaLR 237 490 -98 282 320 50 10 chr11 98460951 98461051 -50322421 - MIR SINE MIR -158 104 1 734 264 92 4 chr11 98461230 98461457 -50322015 - MIR SINE MIR -14 248 2 290 202 0 11 chr11 98461810 98461899 -50321573 + (TA)n Simple_repeat Simple_repeat 1 88 0 22 88 0 0 chr11 98462119 98462176 -50321296 + AT_rich Low_complexity Low_complexity 1 57 0 395 272 60 93 chr11 98462304 98462657 -50320815 + L1MC4a LINE L1 5589 5929 -1879 475 327 19 23 chr11 98462913 98463127 -50320345 - MIR SINE MIR -3 259 47 758 265 75 26 chr11 98463320 98463578 -50319894 - MIR SINE MIR 0 262 1 641 212 0 0 chr11 98463691 98463823 -50319649 + FLAM_A SINE Alu 1 132 -1 517 225 107 35 chr11 98463956 98464125 -50319347 - MIR SINE MIR 0 262 82 1016 146 81 29 chr11 98464787 98464954 -50318518 + Tigger7 DNA MER2_type 2329 2515 -72 325 54 36 0 chr11 98464954 98465010 -50318462 + (TA)n Simple_repeat Simple_repeat 1 58 0 1016 146 81 29 chr11 98465010 98465088 -50318384 + Tigger7 DNA MER2_type 2515 2587 0 259 237 32 45 chr11 98465955 98466111 -50317361 + (CACCC)n Simple_repeat Simple_repeat 1 154 0 703 159 38 0 chr11 98466397 98466529 -50316943 - Tigger3(Golem) DNA MER2_type -103 2926 2790 15311 228 37 20 chr11 98466535 98472473 -50310999 + L1PA12 LINE L1 1 6731 -853 466 162 0 81 chr11 98472474 98472573 -50310899 + FRAM SINE Alu 62 152 -24 258 192 0 91 chr11 98472683 98472782 -50310690 + MLT1A1 LTR MaLR 1 90 -275 291 114 0 0 chr11 98473276 98473320 -50310152 + (TA)n Simple_repeat Simple_repeat 2 45 0 1358 283 63 20 chr11 98473549 98474058 -50309414 + MER34 LTR ERV1 12 542 0 282 339 59 25 chr11 98474180 98474298 -50309174 + MIR3 SINE MIR 14 135 -73 358 309 96 71 chr11 98475337 98475653 -50307819 + L1ME LINE L1 5271 5578 -543 2327 104 6 41 chr11 98475653 98476019 -50307453 + THE1A LTR MaLR 3 355 0 11281 107 6 2 chr11 98476019 98477592 -50305880 + THE1A-int LTR MaLR 1 1580 0 2749 82 3 0 chr11 98477592 98477946 -50305526 + THE1A LTR MaLR 1 355 0 358 309 96 71 chr11 98477946 98478077 -50305395 + L1ME LINE L1 5577 5731 -390 239 224 45 0 chr11 98478095 98478162 -50305310 + L1ME LINE L1 5790 5859 -262 300 120 0 0 chr11 98478341 98478391 -50305081 + (TAAA)n Simple_repeat Simple_repeat 1 50 0 300 27 0 0 chr11 98478698 98478735 -50304737 + (CA)n Simple_repeat Simple_repeat 2 38 0 303 301 88 72 chr11 98479368 98479561 -50303911 + MIR SINE MIR 23 218 -44 28 61 0 0 chr11 98480304 98480353 -50303119 + AT_rich Low_complexity Low_complexity 1 49 0 680 243 40 62 chr11 98481531 98481757 -50301715 - MER58A DNA MER1_type 0 224 4 276 365 56 22 chr11 98482096 98482274 -50301198 + MIR3 SINE MIR 15 198 -10 2499 250 32 2 chr11 98482289 98482912 -50300560 + MER82 DNA MER2_type 11 652 -1 298 298 36 0 chr11 98483620 98483704 -50299768 - L2 LINE L2 -2 3311 3225 519 280 11 46 chr11 98483726 98483901 -50299571 + MIR SINE MIR 93 261 -1 339 291 0 0 chr11 98485126 98485229 -50298243 + MER117 DNA MER1_type 13 115 -82 683 289 97 7 chr11 98485646 98485944 -50297528 - MLT1J2 LTR MaLR -125 325 1 529 247 13 7 chr11 98486202 98486356 -50297116 - L1MD2 LINE L1 -10 6349 6195 1989 253 114 44 chr11 98486359 98487151 -50296321 - L1MDa LINE L1 -5680 860 14 22 0 0 0 chr11 98487159 98487181 -50296291 + AT_rich Low_complexity Low_complexity 1 22 0 2483 151 164 13 chr11 98488913 98489371 -50294101 + MER1A DNA MER1_type 1 527 0 650 286 40 104 chr11 98489529 98489998 -50293474 - L2 LINE L2 0 3313 2875 2111 113 9 28 chr11 98490876 98491194 -50292278 + AluSq SINE Alu 1 312 -1 4428 115 24 1 chr11 98491501 98491831 -50291641 - L1PB1 LINE L1 -27 6124 5803 279 0 0 0 chr11 98491831 98491862 -50291610 + (TG)n Simple_repeat Simple_repeat 2 32 0 4428 115 24 1 chr11 98491862 98492244 -50291228 - L1PB1 LINE L1 -348 5803 5396 699 225 3 0 chr11 98492430 98492606 -50290866 - MSTA LTR MaLR -2 426 246 375 309 30 94 chr11 98492928 98493290 -50290182 + L1MC4a LINE L1 5318 5656 -506 737 336 10 16 chr11 98493395 98493707 -50289765 + MLT1I LTR MaLR 100 409 0 229 299 0 15 chr11 98493882 98493949 -50289523 - MLT1H1 LTR MaLR -188 367 302 301 336 13 67 chr11 98494121 98494359 -50289113 + L1MC4a LINE L1 5694 5918 -1890 1686 271 103 11 chr11 98494882 98495669 -50287803 + L1ME1 LINE L1 4594 5468 -743 1953 145 6 6 chr11 98495678 98495989 -50287483 + AluSq SINE Alu 3 313 0 1604 243 32 51 chr11 98496209 98496716 -50286756 + L1ME1 LINE L1 5459 5955 -211 2036 105 16 10 chr11 98496716 98497021 -50286451 + AluSx SINE Alu 1 307 -5 21 71 0 0 chr11 98497041 98497083 -50286389 + AT_rich Low_complexity Low_complexity 1 42 0 22 70 0 0 chr11 98497292 98497335 -50286137 + AT_rich Low_complexity Low_complexity 1 43 0 214 164 57 31 chr11 98497337 98497390 -50286082 + (TA)n Simple_repeat Simple_repeat 2 52 -112 1779 178 20 6 chr11 98497390 98497732 -50285740 - MER7A DNA MER2_type 0 346 2 214 164 57 31 chr11 98497732 98497837 -50285635 + (TA)n Simple_repeat Simple_repeat 52 164 0 424 221 12 0 chr11 98498012 98498098 -50285374 + Tigger7 DNA MER2_type 2405 2491 0 848 152 35 0 chr11 98498857 98499002 -50284470 - Tigger3(Golem) DNA MER2_type -90 2939 2790 1383 241 5 19 chr11 98499008 98499378 -50284094 + L1PA12 LINE L1 1 365 -7216 262 340 21 28 chr11 98499865 98500006 -50283466 - L2 LINE L2 -2 3311 3172 660 234 21 42 chr11 98500285 98500477 -50282995 - MER5A DNA MER1_type -1 188 1 21 36 0 0 chr11 98500986 98501014 -50282458 + AT_rich Low_complexity Low_complexity 1 28 0 611 316 56 17 chr11 98502365 98502596 -50280876 - MIR SINE MIR -21 241 2 2528 98 31 3 chr11 98502981 98503787 -50279685 + L1PBa LINE L1 725 1694 -5169 4422 106 38 3 chr11 98503787 98504468 -50279004 - LTR30 LTR ERV1 0 722 18 7608 29 0 0 chr11 98504590 98505741 -50277731 + L1PA3 LINE L1 5015 6154 -1 433 336 94 8 chr11 98506402 98506637 -50276835 + MIR SINE MIR 8 262 0 336 156 109 0 chr11 98507725 98507789 -50275683 - MER58 DNA MER1_type -67 274 204 836 178 26 78 chr11 98508169 98508360 -50275112 - MER5A DNA MER1_type -3 186 6 241 286 0 0 chr11 98508462 98508532 -50274940 + GA-rich Low_complexity Low_complexity 2 71 0 43 35 0 0 chr11 98508658 98508715 -50274757 + AT_rich Low_complexity Low_complexity 1 57 0 189 0 0 0 chr11 98509836 98509857 -50273615 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 485 284 140 36 chr11 98509895 98510145 -50273327 + MLT1L LTR MaLR 39 314 -301 5813 196 33 9 chr11 98510663 98512148 -50271324 + L1P5 LINE L1 3958 5482 -672 1469 195 0 34 chr11 98512524 98512816 -50270656 + AluJb SINE Alu 1 282 -30 315 85 0 0 chr11 98512828 98512875 -50270597 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 243 204 0 0 chr11 98512875 98512929 -50270543 + (TA)n Simple_repeat Simple_repeat 2 55 0 186 118 0 0 chr11 98512996 98513030 -50270442 + (GA)n Simple_repeat Simple_repeat 2 35 0 257 363 49 0 chr11 98513179 98513281 -50270191 + L2 LINE L2 3154 3260 -12 21 0 0 0 chr11 98513304 98513325 -50270147 + AT_rich Low_complexity Low_complexity 1 21 0 240 233 55 0 chr11 98513380 98513453 -50270019 + MLT1H LTR MaLR 94 170 -379 51 31 0 0 chr11 98513936 98514001 -50269471 + AT_rich Low_complexity Low_complexity 1 65 0 473 293 116 32 chr11 98514132 98514504 -50268968 - L1 LINE L1 -1469 4677 4275 443 269 119 19 chr11 98514543 98514811 -50268661 - L1 LINE L1 -1956 4190 3896 1198 221 73 23 chr11 98514874 98515218 -50268254 - MLT1A1 LTR MaLR 0 365 5 1467 219 106 84 chr11 98515408 98516100 -50267372 - MER52A LTR ERV1 -969 786 1 193 395 167 0 chr11 98516133 98516247 -50267225 - L2 LINE L2 -2 3270 3138 22 0 0 0 chr11 98516805 98516827 -50266645 + AT_rich Low_complexity Low_complexity 1 22 0 289 253 32 32 chr11 98516929 98517024 -50266448 - MIR SINE MIR -72 190 96 188 61 61 0 chr11 98517464 98517497 -50265975 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 333 311 82 8 chr11 98517556 98517742 -50265730 - MIR SINE MIR -8 254 6 2255 197 46 23 chr11 98518211 98518693 -50264779 + MER6A DNA MER2_type 2 494 -111 1745 186 24 15 chr11 98519495 98519834 -50263638 + MER2 DNA MER2_type 2 343 -1 2138 125 73 14 chr11 98521069 98521413 -50262059 + THE1B LTR MaLR 1 364 0 7203 126 5 52 chr11 98521413 98522627 -50260845 + THE1B-int LTR MaLR 1 1157 -423 357 219 0 0 chr11 98522636 98522755 -50260717 + G-rich Low_complexity Low_complexity 1 119 0 1554 11 0 0 chr11 98522756 98522936 -50260536 + (G)n Simple_repeat Simple_repeat 1 180 0 203 377 25 33 chr11 98523904 98524026 -50259446 - L2 LINE L2 -223 3049 2929 452 277 138 6 chr11 98524424 98524583 -50258889 - MIR SINE MIR -47 215 36 191 213 0 16 chr11 98525308 98525369 -50258103 + C-rich Low_complexity Low_complexity 6 65 0 266 187 27 0 chr11 98525475 98525550 -50257922 - L1 LINE L1 -2241 3905 3829 6532 230 66 32 chr11 98525556 98528781 -50254691 - L1PB1 LINE L1 -1 6866 3345 2056 144 33 28 chr11 98528781 98529143 -50254329 + THE1B LTR MaLR 1 364 0 6532 230 66 32 chr11 98529143 98530844 -50252628 - L1PB1 LINE L1 -3522 3345 1704 284 234 80 103 chr11 98531673 98531848 -50251624 + L2 LINE L2 3006 3176 -137 225 237 0 0 chr11 98531982 98532041 -50251431 + GA-rich Low_complexity Low_complexity 3 61 0 375 300 148 50 chr11 98532042 98532345 -50251127 - MLT1K LTR MaLR -67 521 189 230 314 108 46 chr11 98532313 98532507 -50250965 - MLT1L LTR MaLR -409 206 1 * 197 308 0 0 chr11 98532530 98532582 -50250890 - L2 LINE L2 -560 2754 2703 226 342 74 40 chr11 98532621 98532770 -50250702 - L2 LINE L2 -780 2534 2381 253 118 0 0 chr11 98533180 98533214 -50250258 - MLT1G LTR MaLR -15 575 542 213 184 35 35 chr11 98533332 98533419 -50250053 + (CACCC)n Simple_repeat Simple_repeat 3 89 0 1308 155 35 62 chr11 98533423 98533713 -50249759 + MER51A LTR ERV1 353 634 0 283 303 101 8 chr11 98533760 98533879 -50249593 - MIR SINE MIR -123 139 10 954 106 0 0 chr11 98533903 98534045 -50249427 + L1MA5 LINE L1 6157 6298 -2 229 277 116 9 chr11 98534661 98534773 -50248699 - L2 LINE L2 -253 3060 2937 189 279 0 49 chr11 98534909 98534970 -50248502 - L2 LINE L2 -566 2748 2691 392 210 12 37 chr11 98535148 98535229 -50248243 + LTR39 LTR ERV1 705 783 0 375 259 7 56 chr11 98535279 98535422 -50248050 + L1MCc LINE L1 1207 1342 -5081 479 277 63 21 chr11 98535456 98535542 -50247930 + L1M4 LINE L1 3713 3794 -2352 2186 113 0 0 chr11 98535542 98535843 -50247629 - AluSg1 SINE Alu -8 301 1 479 277 63 21 chr11 98535843 98536087 -50247385 + L1M4 LINE L1 3794 4086 -2060 670 224 106 17 chr11 98536088 98536267 -50247205 - MLT1A1 LTR MaLR 0 365 171 1894 276 57 11 chr11 98536280 98537002 -50246470 + L1M4 LINE L1 4453 5207 -939 562 193 18 9 chr11 98537008 98537122 -50246350 + MLT1C LTR MaLR 351 465 -2 602 240 61 56 chr11 98537747 98537943 -50245529 - MIR SINE MIR -16 246 50 222 105 0 0 chr11 98538430 98538468 -50245004 + (CA)n Simple_repeat Simple_repeat 1 38 0 1445 164 106 25 chr11 98539683 98540062 -50243410 - MER51A LTR ERV1 -148 486 1 629 170 63 25 chr11 98541346 98541505 -50241967 - MER53 DNA DNA 0 189 25 1872 148 38 36 chr11 98541506 98541899 -50241573 - L1MA10 LINE L1 -1 6333 5940 1511 188 22 41 chr11 98541899 98542213 -50241259 - AluJo SINE Alu -4 308 1 216 338 117 19 chr11 98542720 98542933 -50240539 - L3 LINE CR1 -130 1447 1214 289 216 34 23 chr11 98543043 98543131 -50240341 - MLT1J1 LTR MaLR -3 443 355 242 209 23 70 chr11 98543654 98543740 -50239732 - HsTC2 DNA Tc2 -29 1869 1788 238 202 34 45 chr11 98543724 98543813 -50239659 - HsTC2 DNA Tc2 -1798 100 13 * 204 67 0 0 chr11 98544229 98544259 -50239213 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 207 265 29 0 chr11 98544816 98544884 -50238588 + GA-rich Low_complexity Low_complexity 2 71 0 422 236 115 6 chr11 98545181 98545363 -50238109 - L1M4 LINE L1 -1568 4578 4377 1528 239 87 10 chr11 98545363 98545756 -50237716 - MSTB LTR MaLR 0 426 4 2989 264 79 8 chr11 98545772 98547028 -50236444 - L1M4 LINE L1 -1786 4360 3016 235 336 18 44 chr11 98547488 98547601 -50235871 - L3 LINE CR1 -65 1512 1403 382 274 226 10 chr11 98550457 98550665 -50232807 + MIR SINE MIR 7 259 -3 232 259 0 0 chr11 98550680 98550734 -50232738 + MLT1K LTR MaLR 528 581 -7 3337 104 8 6 chr11 98550734 98551279 -50232193 + L1M1 LINE L1 5207 5752 -553 3662 134 45 22 chr11 98551379 98551473 -50231999 + L1PB3 LINE L1 5497 5587 -567 2226 81 13 0 chr11 98551473 98551771 -50231701 - AluY SINE Alu -9 302 1 3662 134 45 22 chr11 98551771 98552317 -50231155 + L1PB3 LINE L1 5587 6152 -2 984 307 111 29 chr11 98552351 98553174 -50230298 + HAL1 LINE L1 1516 2405 -102 234 128 0 0 chr11 98553415 98553454 -50230018 + (TA)n Simple_repeat Simple_repeat 2 40 0 269 303 34 23 chr11 98553555 98553730 -50229742 - L1ME LINE L1 -309 5812 5636 1485 221 46 3 chr11 98553776 98554061 -50229411 + MER21B LTR ERV1 1 297 -566 368 131 16 0 chr11 98554062 98554123 -50229349 + LTR62 LTR ERVK 1 62 -657 430 230 58 7 chr11 98554161 98554300 -50229172 - MER106B DNA MER1_type 0 1059 914 204 158 0 0 chr11 98554332 98554370 -50229102 + (CATATA)n Simple_repeat Simple_repeat 4 41 0 269 179 54 18 chr11 98554418 98554474 -50228998 - MER106A DNA MER1_type -178 58 1 237 269 77 39 chr11 98554493 98554597 -50228875 - L1ME LINE L1 -2213 5595 5488 356 167 39 13 chr11 98555136 98555214 -50228258 - MER116 DNA Mariner 0 80 1 246 253 95 42 chr11 98555456 98555551 -50227921 + MIR3 SINE MIR 15 114 -94 302 365 73 0 chr11 98555673 98555769 -50227703 + L2 LINE L2 3134 3236 -36 1023 166 16 5 chr11 98555875 98556068 -50227404 - L1PBa LINE L1 -6666 197 3 2763 289 67 27 chr11 98556080 98557946 -50225526 - L1ME LINE L1 -985 1522 418 301 353 59 15 chr11 98558176 98558312 -50225160 - HAL1 LINE L1 -2364 143 2 616 227 101 98 chr11 98560338 98560624 -50222848 + LTR16A LTR ERVL 158 444 -6 195 129 0 0 chr11 98561813 98561844 -50221628 + (TCC)n Simple_repeat Simple_repeat 1 31 0 473 274 28 62 chr11 98562055 98562234 -50221238 - FAM SINE Alu -2 173 1 251 65 0 0 chr11 98562285 98562316 -50221156 - L1PA15 LINE L1 -564 5601 5571 3423 139 13 2 chr11 98562316 98562862 -50220610 + L1PA15 LINE L1 5605 6156 -9 247 377 18 9 chr11 98562927 98563041 -50220431 - L2 LINE L2 -19 3253 3139 571 316 161 26 chr11 98563088 98563554 -50219918 - L2 LINE L2 -541 2773 2245 2148 113 3 0 chr11 98563590 98563892 -50219580 + AluSc SINE Alu 5 307 -2 452 337 97 33 chr11 98563920 98564437 -50219035 - L2 LINE L2 -2065 1249 700 425 271 66 20 chr11 98564565 98564716 -50218756 - MIR SINE MIR 0 262 105 315 150 0 0 chr11 98565974 98566034 -50217438 + (CA)n Simple_repeat Simple_repeat 2 61 0 251 167 0 0 chr11 98566760 98566802 -50216670 + THE1C LTR MaLR 1 42 -333 703 149 53 0 chr11 98567072 98567186 -50216286 + AluSq/x SINE Alu 1 120 -193 17213 67 6 4 chr11 98567249 98570291 -50213181 - L1PA6 LINE L1 -29 6125 3079 7528 25 5 0 chr11 98570291 98571482 -50211990 - L1PA2 LINE L1 -1 6154 4964 4107 25 0 0 chr11 98571482 98571968 -50211504 + L1PA2 LINE L1 4458 4943 -1203 881 37 0 0 chr11 98571965 98572074 -50211398 - L1PA6 LINE L1 -3065 3081 2973 * 394 322 65 1 chr11 98572494 98572660 -50210812 - MIR SINE MIR -63 145 17 1687 152 97 178 chr11 98572840 98573611 -50209861 - LTR8A LTR ERV1 -18 709 1 199 224 41 20 chr11 98573775 98573824 -50209648 - L2 LINE L2 -54 3259 3210 755 292 143 21 chr11 98574087 98574464 -50209008 + L1MCc LINE L1 650 1072 -5351 2279 142 13 113 chr11 98574491 98574962 -50208510 + LTR39 LTR ERV1 3 426 -357 11768 152 98 9 chr11 98575064 98575645 -50207827 - L1M1 LINE L1 -4407 3158 2630 216 0 0 0 chr11 98575645 98575669 -50207803 + (TC)n Simple_repeat Simple_repeat 1 24 0 11768 152 98 9 chr11 98575669 98577731 -50205741 - L1M1 LINE L1 -4935 2630 11 266 259 138 0 chr11 98577729 98577845 -50205627 + L1MA10 LINE L1 6203 6334 0 * 329 335 13 46 chr11 98577866 98578018 -50205454 + MIR3 SINE MIR 58 204 -4 656 278 118 12 chr11 98578143 98578398 -50205074 + MLT1I LTR MaLR 94 375 -34 270 207 0 0 chr11 98578603 98578661 -50204811 + (TA)n Simple_repeat Simple_repeat 2 59 0 593 192 0 0 chr11 98578966 98579065 -50204407 - L1M1 LINE L1 -7152 413 315 603 250 19 6 chr11 98579337 98579493 -50203979 + MER103 DNA DNA 8 165 -1 2698 293 74 32 chr11 98580388 98581527 -50201945 + L2 LINE L2 1779 2964 -350 2308 279 32 20 chr11 98581740 98582770 -50200702 - L1ME2 LINE L1 -24 6140 5102 671 280 42 44 chr11 98582769 98583198 -50200274 + L1M4 LINE L1 4489 4916 -1230 * 2022 138 85 18 chr11 98583198 98583539 -50199933 - THE1B LTR MaLR 0 364 1 4031 133 8 16 chr11 98583539 98584186 -50199286 - THE1B-int LTR MaLR 0 1580 939 181 278 0 56 chr11 98635387 98635441 -50148031 + MIR SINE MIR 50 100 -162 13997 191 27 20 chr11 98635544 98637531 -50145941 - L1MA4 LINE L1 0 7719 5748 2222 128 3 0 chr11 98637531 98637843 -50145629 - AluSp SINE Alu 0 313 1 13997 191 27 20 chr11 98637843 98639768 -50143704 - L1MA4 LINE L1 -1971 5748 3647 1253 235 28 59 chr11 98639769 98640276 -50143196 - L1MA4 LINE L1 -3967 3598 3108 5225 177 14 13 chr11 98640387 98641661 -50141811 - L1M2 LINE L1 -702 5610 4331 3201 107 16 6 chr11 98641664 98642160 -50141312 + L1P LINE L1 4252 4752 -1394 536 331 58 42 chr11 98642210 98642470 -50141002 + L2 LINE L2 2993 3256 -16 386 255 59 0 chr11 98642573 98642675 -50140797 - L2 LINE L2 -4 3309 3202 422 325 5 52 chr11 98643449 98643640 -50139832 - MIR SINE MIR -56 206 25 198 317 158 0 chr11 98643676 98643758 -50139714 + MIR SINE MIR 56 150 -112 443 310 81 6 chr11 98643799 98643973 -50139499 - MIR SINE MIR -56 206 20 1073 165 83 4 chr11 98643989 98644219 -50139253 - MER58B DNA MER1_type -27 314 67 2301 194 52 12 chr11 98644219 98644734 -50138738 + L1MC3 LINE L1 7242 7777 -8 400 316 22 127 chr11 98644965 98645421 -50138051 - L2 LINE L2 -1 3271 2864 1099 140 9 11 chr11 98645501 98645814 -50137658 + MLT1B LTR MaLR 1 378 -12 298 320 47 20 chr11 98645925 98646075 -50137397 - L2 LINE L2 -1041 2273 2120 546 16 0 0 chr11 98646597 98646660 -50136812 + (TG)n Simple_repeat Simple_repeat 2 64 0 2598 160 25 83 chr11 98647893 98648587 -50134885 + LTR8 LTR ERV1 1 727 0 381 286 43 37 chr11 98648701 98648862 -50134610 - MIR3 SINE MIR -25 183 22 570 292 113 25 chr11 98649070 98649310 -50134162 - MIR SINE MIR 0 262 2 419 246 60 34 chr11 98650686 98650838 -50132634 + MIR SINE MIR 11 165 -61 375 41 0 0 chr11 98651932 98651981 -50131491 + (CA)n Simple_repeat Simple_repeat 2 50 0 268 175 53 18 chr11 98652417 98652474 -50130998 - L2 LINE L2 -66 3247 3189 22 0 0 0 chr11 98653079 98653101 -50130371 + AT_rich Low_complexity Low_complexity 1 22 0 292 292 214 10 chr11 98654459 98654651 -50128821 + MIR SINE MIR 1 231 -31 2195 117 3 0 chr11 98655052 98655352 -50128120 + AluSx SINE Alu 1 301 -11 354 127 27 23 chr11 98655959 98656063 -50127409 + THE1C LTR MaLR 1 147 -228 * 1492 208 36 32 chr11 98656054 98656188 -50127284 - MLT2A2 LTR ERVL -47 507 375 2200 106 7 3 chr11 98656188 98656480 -50126992 + AluSp SINE Alu 1 293 -20 1492 208 36 32 chr11 98656480 98656848 -50126624 - MLT2A2 LTR ERVL -179 375 2 389 318 16 63 chr11 98656985 98657240 -50126232 - MIR SINE MIR -5 257 15 605 263 160 9 chr11 98657534 98657747 -50125725 + MIR SINE MIR 16 260 -2 347 263 26 26 chr11 98657824 98657976 -50125496 - MER103 DNA DNA -13 153 2 218 32 32 0 chr11 98658285 98658316 -50125156 + (CAT)n Simple_repeat Simple_repeat 1 32 0 316 277 136 19 chr11 98658323 98658478 -50124994 - MIR SINE MIR -12 250 78 302 276 20 10 chr11 98658945 98659043 -50124429 + MER58 DNA MER1_type 1 99 -2321 381 242 22 0 chr11 98659049 98659140 -50124332 + MER58 DNA MER1_type 2328 2420 0 1028 194 109 3 chr11 98659715 98659999 -50123473 + MER33 DNA MER1_type 5 318 -6 6237 210 32 6 chr11 98660240 98662108 -50121364 + L1M3f LINE L1 2 1916 -4065 529 228 0 0 chr11 98662304 98662427 -50121045 - L1 LINE L1 -1272 4874 4752 1770 219 62 9 chr11 98662430 98662896 -50120576 + L1MA9 LINE L1 5783 6273 -39 221 305 78 39 chr11 98663396 98663524 -50119948 + MIR SINE MIR 73 205 -57 960 253 47 39 chr11 98664289 98664696 -50118776 + L1MC4a LINE L1 4672 5081 -1065 295 288 0 14 chr11 98664696 98664769 -50118703 + polypurine Low_complexity Low_complexity 4 75 0 1123 286 74 18 chr11 98664818 98665370 -50118102 + L1MC4a LINE L1 5254 5836 -1972 419 305 147 11 chr11 98665451 98665723 -50117749 + L1MC4a LINE L1 5845 6153 -1655 489 248 134 12 chr11 98666789 98666992 -50116480 + MIR SINE MIR 37 262 0 216 357 0 0 chr11 98667313 98667369 -50116103 - L2 LINE L2 -71 3201 3146 236 359 112 26 chr11 98667529 98667869 -50115603 - L2 LINE L2 -380 2934 2566 206 349 98 8 chr11 98669635 98669767 -50113705 - L2 LINE L2 -3 3310 3167 986 239 4 21 chr11 98669856 98670094 -50113378 + MIR SINE MIR 28 261 -1 864 233 178 73 chr11 98670265 98670398 -50113074 - MLT1D LTR MaLR -1 504 386 1780 136 4 4 chr11 98670398 98670649 -50112823 - AluSq SINE Alu -62 251 1 864 233 178 73 chr11 98670649 98670965 -50112507 - MLT1D LTR MaLR -119 386 8 284 310 171 13 chr11 98672838 98672996 -50110476 - MIR SINE MIR -48 214 32 386 305 15 0 chr11 98673959 98674090 -50109382 + MIR SINE MIR 97 229 -33 241 291 182 0 chr11 98674472 98674582 -50108890 + MIR SINE MIR 78 207 -55 459 307 0 72 chr11 98674930 98675083 -50108389 - L2 LINE L2 -6 3266 3125 239 260 0 0 chr11 98675552 98675602 -50107870 + MER5A DNA MER1_type 138 187 -2 262 291 47 35 chr11 98675704 98675790 -50107682 - L2 LINE L2 -7 3265 3179 515 333 52 8 chr11 98676483 98676732 -50106740 - MIR SINE MIR 0 262 3 185 246 148 16 chr11 98676823 98676884 -50106588 - L2 LINE L2 -17 3255 3187 239 340 32 84 chr11 98677010 98677260 -50106212 - L2 LINE L2 -86 3186 2950 191 182 0 0 chr11 98677406 98677439 -50106033 + MIR SINE MIR 119 151 -111 389 288 144 7 chr11 98678236 98678382 -50105090 + MIR3 SINE MIR 30 195 -13 256 256 103 0 chr11 98678447 98678525 -50104947 - L2 LINE L2 0 3313 3228 645 313 70 74 chr11 98678636 98679096 -50104376 + L3 LINE CR1 1018 1475 -102 187 250 54 76 chr11 98679361 98679417 -50104055 + MIR SINE MIR 118 173 -89 2954 57 0 59 chr11 98679417 98679842 -50103630 - L1PA6 LINE L1 -2 6152 5753 187 250 54 76 chr11 98679842 98679877 -50103595 + MIR SINE MIR 173 207 -55 205 273 0 0 chr11 98679890 98679934 -50103538 + MIR SINE MIR 181 224 -38 1501 197 93 8 chr11 98683082 98683438 -50100034 - MLT1B LTR MaLR -4 386 1 383 325 0 0 chr11 98684065 98684185 -50099287 - MIR SINE MIR -26 236 117 748 263 89 0 chr11 98685733 98685957 -50097515 - MIR SINE MIR -6 256 13 220 367 0 25 chr11 98686048 98686168 -50097304 + MIR3 SINE MIR 41 157 -51 1569 183 3 40 chr11 98686342 98686643 -50096829 - AluJo SINE Alu -22 290 1 23 0 0 0 chr11 98686644 98686667 -50096805 + AT_rich Low_complexity Low_complexity 1 23 0 286 312 161 15 chr11 98686875 98687074 -50096398 - L2 LINE L2 -13 3300 3073 208 269 0 0 chr11 98687300 98687352 -50096120 - L2 LINE L2 -228 3085 3034 382 269 83 39 chr11 98692614 98692770 -50090702 + MIR SINE MIR 93 255 -7 5717 108 7 3 chr11 98693081 98693948 -50089524 + L1MA3 LINE L1 5436 6305 0 199 369 12 13 chr11 98693970 98694069 -50089403 - MIR SINE MIR -110 98 1 468 309 141 75 chr11 98694488 98694928 -50088544 + L2 LINE L2 2804 3272 0 370 240 19 29 chr11 98695266 98695370 -50088102 - L2 LINE L2 -3 3310 3208 * 382 254 208 0 chr11 98695347 98695477 -50087995 + MIR SINE MIR 100 256 -6 30 0 0 0 chr11 98695990 98696020 -50087452 + AT_rich Low_complexity Low_complexity 1 30 0 264 91 0 0 chr11 98696408 98696452 -50087020 + (A)n Simple_repeat Simple_repeat 1 44 0 1922 186 27 0 chr11 98697298 98697636 -50085836 + MER7A DNA MER2_type 2 346 0 202 318 193 21 chr11 98697925 98698158 -50085314 - L2 LINE L2 -443 2871 2599 415 202 37 73 chr11 98698284 98698393 -50085079 - MER5A DNA MER1_type -83 106 2 223 234 0 0 chr11 98698674 98698721 -50084751 + L2 LINE L2 3267 3313 0 1094 297 76 10 chr11 98698929 98699337 -50084135 + LTR16A LTR ERVL 16 450 0 265 309 154 9 chr11 98700659 98700769 -50082703 + L2 LINE L2 3147 3272 0 878 259 23 9 chr11 98701084 98701300 -50082172 + MIR SINE MIR 4 222 -40 194 88 0 29 chr11 98701318 98701352 -50082120 + (TC)n Simple_repeat Simple_repeat 2 34 0 435 113 0 0 chr11 98701357 98701428 -50082044 + (TG)n Simple_repeat Simple_repeat 2 72 0 920 293 85 70 chr11 98701434 98702218 -50081254 - L2 LINE L2 -36 3277 2487 596 316 84 41 chr11 98702359 98702777 -50080695 - LTR33 LTR ERVL -58 463 28 218 381 42 17 chr11 98703917 98704035 -50079437 + L2 LINE L2 3183 3303 -10 21 0 0 0 chr11 98704407 98704428 -50079044 + AT_rich Low_complexity Low_complexity 1 21 0 424 277 14 35 chr11 98705238 98705379 -50078093 - MIR SINE MIR -51 211 74 2226 68 20 14 chr11 98705655 98705947 -50077525 - AluY SINE Alu -17 294 1 765 160 0 8 chr11 98706890 98707015 -50076457 + FLAM_C SINE Alu 1 124 -19 225 222 37 0 chr11 98707248 98707302 -50076170 - MER77 LTR ERV1 -13 592 537 4711 134 39 5 chr11 98707306 98708054 -50075418 + MER4E LTR ERV1 7 779 0 2749 216 9 4 chr11 98708054 98708579 -50074893 - MER77 LTR ERV1 -77 528 1 2285 67 0 3 chr11 98709773 98710111 -50073361 + AluY SINE Alu 1 337 0 264 316 91 53 chr11 98710305 98710514 -50072958 + L2 LINE L2 3056 3272 0 301 307 5 94 chr11 98711698 98711890 -50071582 - L3 LINE CR1 -6 1571 1397 1065 232 82 36 chr11 98712061 98712244 -50071228 - MER69 DNA AcHobo 0 2526 2353 2008 126 64 17 chr11 98712244 98712602 -50070870 - THE1C LTR MaLR 0 375 1 1065 232 82 36 chr11 98712602 98712857 -50070615 - MER69 DNA AcHobo -173 2353 2068 757 276 98 16 chr11 98712954 98713446 -50070026 - L1MEc LINE L1 -2534 3681 3150 461 329 106 35 chr11 98713558 98714056 -50069416 - L1MEc LINE L1 -788 1788 1299 1273 272 47 34 chr11 98714071 98714538 -50068934 + L2 LINE L2 2456 2928 -386 339 254 56 118 chr11 98714727 98715101 -50068371 - L1MEc LINE L1 -5248 957 607 346 310 86 32 chr11 98715254 98715441 -50068031 - L1MEc LINE L1 -5901 304 108 24 0 0 0 chr11 98715462 98715486 -50067986 + AT_rich Low_complexity Low_complexity 1 24 0 512 304 69 15 chr11 98715562 98715766 -50067706 + MIR SINE MIR 33 247 -15 230 338 12 0 chr11 98715859 98715939 -50067533 + L2 LINE L2 3227 3307 -6 261 0 0 0 chr11 98716029 98716058 -50067414 + (CA)n Simple_repeat Simple_repeat 2 30 0 365 307 50 28 chr11 98716150 98716368 -50067104 + HAL1b LINE L1 590 812 -536 249 33 0 0 chr11 98716600 98716630 -50066842 + (CA)n Simple_repeat Simple_repeat 1 30 0 260 210 10 50 chr11 98716943 98716983 -50066489 + A-rich Low_complexity Low_complexity 2 42 -55 2493 54 0 0 chr11 98716983 98717277 -50066195 + AluY SINE Alu 3 296 -15 260 210 10 50 chr11 98717277 98717336 -50066136 + A-rich Low_complexity Low_complexity 42 97 0 25 31 0 0 chr11 98717402 98717434 -50066038 + AT_rich Low_complexity Low_complexity 1 32 0 1249 212 59 41 chr11 98717650 98718137 -50065335 - MLT1F1 LTR MaLR -2 565 14 369 125 11 102 chr11 98718273 98718361 -50065111 + MADE1 DNA Mariner 1 80 0 427 303 52 42 chr11 98718362 98718625 -50064847 + L1ME LINE L1 5479 5739 -423 349 221 259 8 chr11 98719680 98719811 -50063661 - MIR SINE MIR -2 260 97 2525 198 22 33 chr11 98721092 98721638 -50061834 + MLT1F LTR MaLR 1 540 -2 363 244 12 12 chr11 98721752 98721834 -50061638 - MIR SINE MIR -173 89 8 431 314 42 0 chr11 98722587 98722705 -50060767 - MIR SINE MIR -106 156 34 1816 178 64 19 chr11 98722734 98723111 -50060361 - MSTD LTR MaLR -2 394 1 214 269 39 0 chr11 98723808 98723860 -50059612 + polypyrimidine Low_complexity Low_complexity 1 54 0 216 67 0 0 chr11 98724068 98724098 -50059374 + (TTG)n Simple_repeat Simple_repeat 2 31 0 306 319 73 49 chr11 98725547 98725751 -50057721 + MIR SINE MIR 28 236 -26 441 66 0 0 chr11 98725980 98726041 -50057431 + (CA)n Simple_repeat Simple_repeat 2 62 0 259 285 285 0 chr11 98726302 98726432 -50057040 + MIR SINE MIR 26 192 -70 383 318 20 53 chr11 98726499 98726650 -50056822 + MLT2F LTR ERVL 1 146 -517 534 254 59 12 chr11 98726661 98726830 -50056642 + MLT1E3 LTR MaLR 58 234 -390 227 304 9 18 chr11 98726922 98727034 -50056438 + (CATA)n Simple_repeat Simple_repeat 3 113 0 288 0 0 0 chr11 98727066 98727098 -50056374 + (CA)n Simple_repeat Simple_repeat 2 33 0 228 231 0 0 chr11 98727534 98727586 -50055886 - L2 LINE L2 -1 3312 3261 * 869 214 70 39 chr11 98727554 98727596 -50055876 - MIR SINE MIR -15 247 208 2338 68 4 0 chr11 98727596 98727875 -50055597 + AluY SINE Alu 17 296 -15 869 214 70 39 chr11 98727875 98728061 -50055411 - MIR SINE MIR -54 208 12 1852 178 10 54 chr11 98728115 98728520 -50054952 - MLT1B LTR MaLR 0 390 4 436 285 205 20 chr11 98729339 98729539 -50053933 - MIR SINE MIR -8 254 18 326 368 18 25 chr11 98729560 98729723 -50053749 - MIR SINE MIR -72 190 29 253 264 11 58 chr11 98730606 98730693 -50052779 - MIR SINE MIR -116 146 64 265 306 117 79 chr11 98730857 98731200 -50052272 + L2 LINE L2 2384 2739 -575 194 266 31 16 chr11 98731583 98731647 -50051825 - L2 LINE L2 -3 3269 3205 1620 198 68 46 chr11 98733577 98734032 -50049440 + LTR40c LTR ERVL 1 465 0 915 230 20 15 chr11 98734405 98734609 -50048863 - MIR SINE MIR -41 221 17 424 358 104 5 chr11 98734659 98734880 -50048592 - MIR SINE MIR 0 262 20 237 294 158 41 chr11 98735251 98735397 -50048075 - MIR3 SINE MIR -2 206 44 2846 250 5 20 chr11 98735707 98736370 -50047102 + MER82 DNA MER2_type 1 653 0 648 335 40 81 chr11 98737320 98737789 -50045683 + L2 LINE L2 2821 3270 -2 25 31 0 0 chr11 98738383 98738415 -50045057 + AT_rich Low_complexity Low_complexity 1 32 0 455 257 30 0 chr11 98738905 98739006 -50044466 - MIR SINE MIR -71 191 88 2213 112 3 0 chr11 98739339 98739635 -50043837 - AluSq SINE Alu -14 299 3 266 362 59 26 chr11 98740145 98740297 -50043175 - MIR SINE MIR -101 161 5 2267 67 0 7 chr11 98740381 98740691 -50042781 + AluY SINE Alu 1 308 0 610 282 148 48 chr11 98740952 98741310 -50042162 + L3 LINE CR1 1183 1576 -1 333 0 0 0 chr11 98741551 98741588 -50041884 + (TG)n Simple_repeat Simple_repeat 2 38 0 207 0 0 0 chr11 98741982 98742005 -50041467 + (T)n Simple_repeat Simple_repeat 1 23 0 1796 200 11 19 chr11 98742191 98742556 -50040916 + MLT1A1 LTR MaLR 2 363 -2 354 330 105 34 chr11 98743771 98743952 -50039520 - MIR SINE MIR -54 208 17 188 256 0 0 chr11 98744202 98744241 -50039231 - L2 LINE L2 -219 3053 3015 388 225 47 70 chr11 98744786 98744948 -50038524 + MIR SINE MIR 37 192 -62 238 314 12 0 chr11 98745087 98745173 -50038299 - L2 LINE L2 -2 3311 3225 1403 193 14 25 chr11 98745184 98745669 -50037803 + L1MB7 LINE L1 5038 5515 -659 1858 202 19 11 chr11 98745669 98746031 -50037441 - MLT1A1 LTR MaLR 0 365 1 4660 238 70 31 chr11 98746031 98746736 -50036736 - MLT1A1-int LTR MaLR 0 1735 964 1884 153 7 3 chr11 98746736 98747037 -50036435 + AluSx SINE Alu 3 304 -8 4660 238 70 31 chr11 98747037 98747498 -50035974 - MLT1A1-int LTR MaLR -771 964 523 15191 34 1 1 chr11 98747499 98750169 -50033303 + L1PA4 LINE L1 3481 6151 -4 2541 164 42 2 chr11 98750185 98750662 -50032810 - MLT1A1-int LTR MaLR -1238 497 2 1882 159 48 28 chr11 98750663 98751021 -50032451 - MLT1A1 LTR MaLR 0 365 1 2716 198 61 5 chr11 98751021 98751641 -50031831 + L1MB7 LINE L1 5511 6165 -19 877 305 19 8 chr11 98751807 98752066 -50031406 - MIR SINE MIR 0 262 1 2137 118 7 7 chr11 98752070 98752437 -50031035 - AluSx SINE Alu 0 373 7 313 262 113 81 chr11 98752507 98752585 -50030887 - L3 LINE CR1 -2 1575 1501 2465 82 0 0 chr11 98752585 98752891 -50030581 - AluY SINE Alu -5 306 1 313 262 113 81 chr11 98752891 98753033 -50030439 - L3 LINE CR1 -76 1501 1348 316 336 38 28 chr11 98753066 98753277 -50030195 - LTR16A1 LTR ERVL 0 457 245 543 259 60 95 chr11 98753455 98753719 -50029753 + MIR SINE MIR 1 251 -11 216 111 0 0 chr11 98754642 98754678 -50028794 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 2275 84 0 3 chr11 98757846 98758143 -50025329 - AluY SINE Alu -13 298 3 282 313 40 47 chr11 98758218 98758368 -50025104 + L2 LINE L2 3160 3308 -5 202 250 0 67 chr11 98759281 98759341 -50024131 - L2 LINE L2 -7 3265 3210 232 286 25 59 chr11 98759791 98759910 -50023562 + MIR SINE MIR 118 232 -30 180 176 0 0 chr11 98759941 98759975 -50023497 + GA-rich Low_complexity Low_complexity 2 35 0 400 258 0 0 chr11 98761162 98761255 -50022217 + MER97b DNA MER1_type? 961 1053 0 353 291 78 28 chr11 98761730 98761871 -50021601 - MIR3 SINE MIR -25 183 36 390 336 83 66 chr11 98762137 98762560 -50020912 - L2 LINE L2 0 3272 2843 736 315 71 58 chr11 98762713 98763148 -50020324 - L2 LINE L2 -481 2833 2393 462 267 25 71 chr11 98763575 98763804 -50019668 - MIR3 SINE MIR -42 220 3 2225 226 17 34 chr11 98765905 98766494 -50016978 + MER74B LTR ERVL 44 622 0 495 311 71 21 chr11 98766625 98766908 -50016564 + ERVL LTR ERVL 1390 1686 -4078 385 311 31 50 chr11 98767049 98767271 -50016201 + ERVL LTR ERVL 2431 2648 -3006 559 239 151 32 chr11 98767356 98767640 -50015832 + L1ME4a LINE L1 5804 6121 0 342 337 161 45 chr11 98768086 98768329 -50015143 - L2 LINE L2 -33 3239 2969 772 307 64 9 chr11 98768437 98768763 -50014709 - L3 LINE CR1 -111 1466 1123 432 273 7 49 chr11 98768812 98768943 -50014529 - L2 LINE L2 -8 3305 3179 446 46 15 0 chr11 98768943 98769008 -50014464 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 432 273 7 49 chr11 98769008 98769019 -50014453 - L2 LINE L2 -134 3179 3169 255 31 0 0 chr11 98769028 98769060 -50014412 + (CA)n Simple_repeat Simple_repeat 2 33 0 479 262 131 26 chr11 98769061 98769355 -50014117 - L1MC/D LINE L1 -465 5656 5314 189 0 0 0 chr11 98770168 98770189 -50013283 + (TA)n Simple_repeat Simple_repeat 1 21 0 296 218 26 0 chr11 98771055 98771133 -50012339 + MLT2B1 LTR ERVL 83 162 -252 1429 165 58 55 chr11 98771133 98771496 -50011976 + THE1C LTR MaLR 1 364 -11 733 245 62 62 chr11 98771504 98771826 -50011646 + MLT2B1 LTR ERVL 159 480 -40 342 259 47 0 chr11 98771831 98771916 -50011556 + L1MC4 LINE L1 6615 6703 -1339 188 35 35 0 chr11 98772102 98772131 -50011341 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 228 229 62 0 chr11 98772550 98772598 -50010874 + MIR SINE MIR 63 113 -149 619 340 26 4 chr11 98773804 98774036 -50009436 + MIR SINE MIR 26 262 0 244 282 8 94 chr11 98774041 98774158 -50009314 - L1MC/D LINE L1 -2158 5650 5544 744 221 60 16 chr11 98775069 98775281 -50008191 + MSTD LTR MaLR 215 396 0 368 377 73 18 chr11 98775427 98775756 -50007716 + L2 LINE L2 2457 2803 -511 326 286 98 36 chr11 98775898 98776015 -50007457 + L2 LINE L2 3075 3183 -130 2472 133 64 7 chr11 98776015 98776420 -50007052 - MSTA LTR MaLR 0 428 1 326 286 98 36 chr11 98776420 98776526 -50006946 + L2 LINE L2 3183 3312 -1 515 275 93 48 chr11 98776826 98777160 -50006312 - L1ME4a LINE L1 -175 5946 5598 1185 108 30 0 chr11 98777161 98777328 -50006144 + AluSg/x SINE Alu 127 298 -12 475 329 41 12 chr11 98777328 98777574 -50005898 - L1ME4a LINE L1 -519 5602 5350 838 66 25 0 chr11 98777591 98777712 -50005760 - AluY SINE Alu 0 311 188 268 268 8 8 chr11 98779487 98779614 -50003858 + CT-rich Low_complexity Low_complexity 1 127 0 1370 231 89 28 chr11 98781740 98782165 -50001307 + MLT1D LTR MaLR 55 505 0 342 338 65 30 chr11 98782168 98782369 -50001103 + MIR SINE MIR 46 253 -9 231 328 0 0 chr11 98782908 98782966 -50000506 - L3 LINE CR1 -5 1572 1515 193 341 90 24 chr11 98783133 98783221 -50000251 + L3 LINE CR1 1392 1473 -104 2207 126 10 0 chr11 98783221 98783523 -49999949 + AluSx SINE Alu 1 305 -7 193 341 90 24 chr11 98783523 98783601 -49999871 + L3 LINE CR1 1473 1569 -8 1901 141 6 16 chr11 98783690 98784003 -49999469 - AluSg SINE Alu 0 310 1 2139 125 3 0 chr11 98784971 98785268 -49998204 - AluSg SINE Alu -9 301 4 509 300 42 26 chr11 98786243 98786433 -49997039 - MIR SINE MIR -49 213 21 283 285 185 39 chr11 98786862 98786992 -49996480 - MIR SINE MIR -110 152 4 23 0 0 0 chr11 98787367 98787390 -49996082 + AT_rich Low_complexity Low_complexity 1 23 0 336 341 28 48 chr11 98788278 98788633 -49994839 + L1MEc LINE L1 247 594 -6013 225 287 27 85 chr11 98788955 98789286 -49994186 + L1MEc LINE L1 877 1188 -5228 436 315 48 76 chr11 98789297 98789330 -49994142 + L1MEc LINE L1 1080 1112 -5316 1501 224 28 19 chr11 98789330 98789692 -49993780 + MLT1A1 LTR MaLR 1 365 0 436 315 48 76 chr11 98789692 98789881 -49993591 + L1MEc LINE L1 1112 1287 -5141 1831 170 3 3 chr11 98789881 98790194 -49993278 - AluSx SINE Alu 0 312 1 436 315 48 76 chr11 98790194 98790389 -49993083 + L1MEc LINE L1 1287 1486 -4942 354 302 43 79 chr11 98790396 98790674 -49992798 + L1MEc LINE L1 1622 1889 -4718 15792 171 26 14 chr11 98790705 98797482 -49985990 + L1PB1 LINE L1 3 6862 -5 244 265 59 19 chr11 98797507 98797787 -49985685 + L1MEc LINE L1 1848 2213 -4394 23 0 0 0 chr11 98797809 98797832 -49985640 + AT_rich Low_complexity Low_complexity 1 23 0 1067 233 63 30 chr11 98798086 98798417 -49985055 + MER87 LTR ERV1 148 489 -52 293 240 112 71 chr11 98798599 98798716 -49984756 + L1ME2 LINE L1 5952 6082 -82 7347 147 18 9 chr11 98798716 98800005 -49983467 + HSMAR2 DNA Mariner 2 1301 -1 293 240 112 71 chr11 98800005 98800083 -49983389 + L1ME2 LINE L1 6082 6155 -9 283 256 0 0 chr11 98801068 98801158 -49982314 - L1ME LINE L1 -316 5805 5716 686 281 153 44 chr11 98801547 98802092 -49981380 + L2 LINE L2 2410 3085 -228 3531 179 30 8 chr11 98802092 98802756 -49980716 - LTR58 LTR ERV1 0 679 1 686 281 153 44 chr11 98802756 98803013 -49980459 + L2 LINE L2 3085 3313 0 703 184 32 38 chr11 98803046 98803204 -49980268 + MER5A DNA MER1_type 3 159 -30 204 214 126 67 chr11 98803200 98803309 -49980163 - MIR SINE MIR -44 164 39 * 1199 163 41 148 chr11 98803701 98804113 -49979359 - MLT1A2 LTR MaLR -6 368 1 1278 174 97 0 chr11 98804113 98804372 -49979100 - MLT1A2-int LTR MaLR 0 1735 1452 503 213 1 0 chr11 98804365 98804476 -49978996 - MLT1A2-int LTR MaLR -327 1407 933 * 394 239 0 0 chr11 98804597 98804689 -49978783 - MLT1A2-int LTR MaLR -968 767 676 1896 213 25 24 chr11 98804744 98805421 -49978051 - MLT1A2-int LTR MaLR -487 884 1 1220 236 35 46 chr11 98805426 98805799 -49977673 - MLT1A2 LTR MaLR -5 369 1 192 220 0 20 chr11 98807412 98807462 -49976010 - MIR SINE MIR -68 194 146 232 204 0 0 chr11 98808135 98808184 -49975288 - HsTC2 DNA Tc2 -1812 86 38 477 249 62 40 chr11 98808206 98808383 -49975089 - MIR SINE MIR -34 228 48 189 368 65 0 chr11 98808717 98808872 -49974600 - MIR SINE MIR -24 238 74 724 193 0 21 chr11 98808953 98809098 -49974374 - FRAM SINE Alu 0 40 1 186 128 0 0 chr11 98810101 98810140 -49973332 + (T)n Simple_repeat Simple_repeat 1 39 0 329 312 80 22 chr11 98811121 98811259 -49972213 + MIR3 SINE MIR 19 164 -44 21 0 0 0 chr11 98811447 98811468 -49972004 + AT_rich Low_complexity Low_complexity 1 21 0 679 125 23 16 chr11 98811572 98811700 -49971772 - L1MB3 LINE L1 -2 6181 6053 2174 103 0 0 chr11 98811908 98812189 -49971283 + AluSg SINE Alu 1 281 -29 234 0 0 0 chr11 98813301 98813327 -49970145 + (T)n Simple_repeat Simple_repeat 1 26 0 225 0 0 0 chr11 98813504 98813529 -49969943 + (T)n Simple_repeat Simple_repeat 1 25 0 227 330 134 0 chr11 98814791 98814903 -49968569 - MIR3 SINE MIR -68 140 14 741 253 0 17 chr11 98815333 98815507 -49967965 - MER5B DNA MER1_type 0 178 8 439 338 86 5 chr11 98815551 98815749 -49967723 - MIR SINE MIR -48 214 1 365 273 60 27 chr11 98816750 98816900 -49966572 + MIR SINE MIR 58 212 -50 1795 90 127 4 chr11 98817847 98818114 -49965358 - AluSg SINE Alu 0 300 1 339 260 94 0 chr11 98818125 98818221 -49965251 - L2 LINE L2 0 3272 3168 277 273 173 9 chr11 98818735 98818845 -49964627 - MIR3 SINE MIR -68 140 13 330 287 62 16 chr11 98818876 98819005 -49964467 + LTR33 LTR ERVL 9 143 -378 365 296 40 33 chr11 98819068 98819220 -49964252 + LTR33 LTR ERVL 244 396 -125 445 289 110 41 chr11 98819268 98819514 -49963958 - MLT1D LTR MaLR -149 356 94 5659 136 3 1 chr11 98819724 98821479 -49961993 + L1PA16 LINE L1 4399 6157 -9 376 123 0 0 chr11 98821660 98821717 -49961755 - MADE1 DNA Mariner 0 80 24 333 150 0 0 chr11 98821710 98821770 -49961702 - MSTB LTR MaLR -366 60 1 * 269 306 0 0 chr11 98821848 98821920 -49961552 - L2 LINE L2 -504 2810 2739 254 173 0 0 chr11 98821926 98821978 -49961494 + MADE1 DNA Mariner 27 78 -2 24 0 0 0 chr11 98822008 98822032 -49961440 + AT_rich Low_complexity Low_complexity 1 24 0 899 264 116 3 chr11 98822708 98823026 -49960446 + L2 LINE L2 2457 2810 -504 364 275 115 15 chr11 98823026 98823104 -49960368 + MER20B DNA MER1_type 1 70 -713 2545 169 14 2 chr11 98823104 98823525 -49959947 + MSTB LTR MaLR 1 426 0 364 275 115 15 chr11 98823525 98823646 -49959826 + MER20B DNA MER1_type 70 220 -563 827 242 110 31 chr11 98823690 98824008 -49959464 + MER20B DNA MER1_type 427 769 -14 768 253 183 31 chr11 98824012 98824438 -49959034 + L2 LINE L2 2803 3299 -14 25 51 0 0 chr11 98824470 98824509 -49958963 + AT_rich Low_complexity Low_complexity 1 39 0 432 264 24 64 chr11 98824547 98824672 -49958800 - HAL1 LINE L1 -1467 1040 921 1139 184 0 29 chr11 98824678 98824885 -49958587 - AluJb SINE Alu -20 292 92 319 287 53 67 chr11 98824933 98825215 -49958257 - HAL1 LINE L1 -1612 895 618 252 236 0 0 chr11 98825370 98825425 -49958047 - HAL1 LINE L1 -2114 393 339 367 360 102 36 chr11 98825805 98826038 -49957434 - L2 LINE L2 -1 3312 3096 3185 161 19 2 chr11 98826038 98826577 -49956895 - MER44D DNA MER2_type -1 604 2 367 360 102 36 chr11 98826577 98826813 -49956659 - L2 LINE L2 -217 3096 2812 320 368 50 18 chr11 98826864 98827204 -49956268 - L1M4 LINE L1 -1055 5091 4741 182 356 27 0 chr11 98827451 98827524 -49955948 + L2 LINE L2 3197 3271 -1 366 119 0 60 chr11 98828249 98828333 -49955139 + Charlie5 DNA MER1_type 2519 2597 -15 194 345 58 11 chr11 98829787 98829874 -49953598 - MIR SINE MIR -147 115 25 182 219 16 78 chr11 98829986 98830050 -49953422 + MIR SINE MIR 123 182 -80 357 297 183 17 chr11 98831103 98831278 -49952194 - MIR SINE MIR -6 256 53 337 313 46 20 chr11 98831558 98831723 -49951749 - MIR SINE MIR -4 204 36 212 0 36 0 chr11 98831769 98831797 -49951675 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 1853 141 0 0 chr11 98831804 98832067 -49951405 - AluSx SINE Alu -21 291 29 393 22 0 0 chr11 98832174 98832220 -49951252 + (TG)n Simple_repeat Simple_repeat 2 47 0 365 385 87 0 chr11 98832289 98832507 -49950965 + MIR SINE MIR 11 247 -15 252 0 0 0 chr11 98832643 98832671 -49950801 + (CAA)n Simple_repeat Simple_repeat 2 29 0 233 206 0 29 chr11 98833673 98833741 -49949731 + GA-rich Low_complexity Low_complexity 3 68 0 1566 211 3 10 chr11 98833822 98834135 -49949337 + AluJo SINE Alu 1 311 -1 390 325 89 0 chr11 98834521 98834678 -49948794 - MIR SINE MIR -74 188 18 692 11 0 22 chr11 98835135 98835225 -49948247 + L1PA3 LINE L1 6068 6155 0 2095 129 30 82 chr11 98835504 98835944 -49947528 - MSTB LTR MaLR -9 417 1 748 114 0 9 chr11 98836127 98836232 -49947240 + AluSc SINE Alu 103 206 -103 364 167 14 42 chr11 98836236 98836308 -49947164 - MER5A DNA MER1_type -111 78 9 822 144 30 0 chr11 98836324 98836456 -49947016 + AluJo SINE Alu 1 136 -176 905 333 61 20 chr11 98837195 98837651 -49945821 - L3 LINE CR1 -84 1493 1019 366 286 125 40 chr11 98837714 98837938 -49945534 + MIR SINE MIR 20 262 0 477 309 143 23 chr11 98838332 98838591 -49944881 - L3 LINE CR1 -1045 532 243 2671 39 25 6 chr11 98838604 98838959 -49944513 + MLT2A1 LTR ERVL 1 362 -82 5044 225 22 52 chr11 98839887 98839955 -49943517 - L1MEc LINE L1 -1667 4548 4479 243 0 0 0 chr11 98839955 98839982 -49943490 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5044 225 22 52 chr11 98839982 98841267 -49942205 - L1MEc LINE L1 -1736 4479 3176 402 137 0 0 chr11 98841267 98841340 -49942132 - Alu SINE Alu -1 309 237 5044 225 22 52 chr11 98841340 98841546 -49941926 - L1MEc LINE L1 -3039 3176 2965 * 37277 78 6 8 chr11 98841540 98847698 -49935774 - L1PA6 LINE L1 0 6154 11 11907 143 36 9 chr11 98847711 98851005 -49932467 - L1PBa LINE L1 -3233 3629 243 1469 153 114 29 chr11 98851011 98851144 -49932328 - THE1C LTR MaLR -37 338 218 327 49 0 0 chr11 98851144 98851185 -49932287 + (GA)n Simple_repeat Simple_repeat 1 41 0 1469 153 114 29 chr11 98851185 98851358 -49932114 - THE1C LTR MaLR -157 218 6 1581 118 37 0 chr11 98851358 98851603 -49931869 - L1PBa LINE L1 -6609 254 1 2139 120 20 3 chr11 98851654 98851955 -49931517 - AluSc SINE Alu -1 308 3 1515 248 119 32 chr11 98852062 98853361 -49930111 - L1MEc LINE L1 -3326 2889 1517 318 264 55 28 chr11 98853450 98853714 -49929758 - L1MEc LINE L1 -4908 1297 1054 1836 84 4 16 chr11 98853878 98854129 -49929343 - L1PA7 LINE L1 -8 6146 5899 333 294 13 65 chr11 98854582 98854735 -49928737 - MIR3 SINE MIR -2 206 62 22 88 0 0 chr11 98854857 98854914 -49928558 + AT_rich Low_complexity Low_complexity 1 57 0 323 305 61 0 chr11 98855666 98855748 -49927724 - L2 LINE L2 0 3272 3186 338 287 0 0 chr11 98855860 98855947 -49927525 + L2 LINE L2 3186 3272 0 26 64 0 0 chr11 98856121 98856168 -49927304 + AT_rich Low_complexity Low_complexity 1 47 0 456 317 55 15 chr11 98856739 98856938 -49926534 - MIR SINE MIR -39 223 17 668 294 68 28 chr11 98856961 98857213 -49926259 - MIR SINE MIR 0 262 1 376 336 43 50 chr11 98857235 98857515 -49925957 - L3 LINE CR1 -46 1531 1254 336 315 110 79 chr11 98857514 98858006 -49925466 - L2 LINE L2 -2 3311 2805 * 4194 196 34 12 chr11 98858041 98858920 -49924552 + L1MC3 LINE L1 6688 7585 -200 * 42051 46 24 3 chr11 98858918 98865154 -49918318 + L1PA2 LINE L1 2 6358 -1 789 319 20 0 chr11 98867503 98867754 -49915718 - HERVL LTR ERVL -1360 4294 4039 1695 204 86 17 chr11 98867792 98868198 -49915274 - MLT1E LTR MaLR 0 593 137 249 105 18 35 chr11 98868560 98868617 -49914855 + (TA)n Simple_repeat Simple_repeat 2 57 0 803 202 0 0 chr11 98868617 98868746 -49914726 + AluJo SINE Alu 125 253 -59 260 350 27 36 chr11 98868816 98868984 -49914488 + MIR SINE MIR 30 206 -56 7790 16 0 1 chr11 98869401 98870660 -49912812 + L1PA2 LINE L1 4897 6154 -1 1014 171 9 19 chr11 98870665 98870876 -49912596 + L1MC3 LINE L1 7577 7785 0 1343 311 43 31 chr11 98873225 98873514 -49909958 - HERVL LTR ERVL -1360 4294 4010 1936 231 103 18 chr11 98873514 98874059 -49909413 - MLT1E LTR MaLR 0 593 3 1343 311 43 31 chr11 98874059 98874422 -49909050 - HERVL LTR ERVL -1644 4010 3634 231 181 42 28 chr11 98874585 98874657 -49908815 + (CATATA)n Simple_repeat Simple_repeat 5 77 0 721 208 7 14 chr11 98874691 98874835 -49908637 - LTR40a LTR ERVL -65 454 312 1171 346 61 22 chr11 98874857 98875558 -49907914 - HERVL LTR ERVL -2042 3612 2924 283 263 108 97 chr11 98875938 98876124 -49907348 - MLT1J1 LTR MaLR -30 416 229 402 268 0 71 chr11 98876172 98876276 -49907196 - MLT1J1 LTR MaLR -287 159 64 4685 203 46 12 chr11 98876276 98877282 -49906190 - MER45B DNA AcHobo 0 1040 1 402 268 0 71 chr11 98877282 98877304 -49906168 - MLT1J1 LTR MaLR -382 64 42 291 217 124 8 chr11 98877406 98877481 -49905991 - MIR SINE MIR -16 246 181 198 0 0 0 chr11 98877481 98877503 -49905969 + (TTA)n Simple_repeat Simple_repeat 2 23 0 291 217 124 8 chr11 98877503 98877584 -49905888 - MIR SINE MIR -81 181 64 426 304 66 39 chr11 98877743 98877924 -49905548 - L3 LINE CR1 0 1577 1392 362 294 29 101 chr11 98878235 98878447 -49905025 + MIR SINE MIR 3 206 -56 1582 95 4 16 chr11 98878686 98878929 -49904543 - L1MA4 LINE L1 -6 6294 6055 2848 75 0 0 chr11 98878932 98879303 -49904169 + L1PA8 LINE L1 5801 6171 -1 21 57 0 0 chr11 98879335 98879370 -49904102 + AT_rich Low_complexity Low_complexity 1 35 0 2228 146 26 26 chr11 98879573 98879951 -49903521 + MSTB LTR MaLR 1 378 -48 6706 70 3 2 chr11 98880236 98881482 -49901990 + L1PA7 LINE L1 4897 6143 -11 310 276 0 11 chr11 98882064 98882151 -49901321 + LTR67 LTR ERVL 459 544 -13 685 173 65 16 chr11 98882376 98882561 -49900911 - L1M4 LINE L1 -989 5157 4964 738 166 40 0 chr11 98882568 98882719 -49900753 + L1MA9 LINE L1 6051 6207 -105 1573 106 0 0 chr11 98883350 98883568 -49899904 - L1PB3 LINE L1 -2 6152 5935 23 78 0 0 chr11 98883634 98883685 -49899787 + AT_rich Low_complexity Low_complexity 1 51 0 191 35 0 35 chr11 98883739 98883768 -49899704 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1083 75 0 0 chr11 98884566 98884712 -49898760 + (GAAA)n Simple_repeat Simple_repeat 1 146 0 309 320 41 0 chr11 98885044 98885141 -49898331 + L2 LINE L2 3172 3272 0 222 37 0 0 chr11 98886133 98886160 -49897312 + (GA)n Simple_repeat Simple_repeat 2 28 0 1859 264 50 4 chr11 98886164 98886703 -49896769 + MER90 LTR ERV1 9 572 -3 210 143 0 0 chr11 98886710 98886745 -49896727 + (CATA)n Simple_repeat Simple_repeat 2 36 0 237 206 59 15 chr11 98886968 98887036 -49896436 + MIR SINE MIR 163 233 -29 328 238 53 80 chr11 98888052 98888203 -49895269 - L1ME4a LINE L1 -37 6084 5938 2437 149 23 25 chr11 98888204 98888639 -49894833 - Tigger2a DNA MER2_type 0 434 1 193 381 11 58 chr11 98891040 98891229 -49892243 + L2 LINE L2 2849 3028 -244 2367 263 61 15 chr11 98892349 98893082 -49890390 + L2 LINE L2 1788 2554 -760 644 375 99 31 chr11 98893749 98894441 -49889031 - L2 LINE L2 0 3272 2554 311 284 95 11 chr11 98894580 98894675 -49888797 - MIR SINE MIR -79 129 27 183 250 62 0 chr11 98896303 98896351 -49887121 - MIR SINE MIR -71 191 141 443 213 11 0 chr11 98896521 98896615 -49886857 + MIR SINE MIR 74 168 -94 336 24 0 0 chr11 98896889 98896930 -49886542 + (TG)n Simple_repeat Simple_repeat 2 42 0 21 0 0 0 chr11 98897407 98897428 -49886044 + AT_rich Low_complexity Low_complexity 1 21 0 189 339 47 47 chr11 98898295 98898422 -49885050 - L2 LINE L2 0 3313 3187 259 337 85 15 chr11 98898632 98898831 -49884641 - MIR SINE MIR -46 216 4 292 242 74 21 chr11 98899203 98899298 -49884174 + L2 LINE L2 3173 3272 0 383 357 25 45 chr11 98899934 98900132 -49883340 + MIR SINE MIR 3 197 -65 1950 108 10 27 chr11 98900132 98900449 -49883023 + AluSx SINE Alu 1 295 -17 383 357 25 45 chr11 98900449 98900507 -49882965 + MIR SINE MIR 197 255 -7 416 326 127 21 chr11 98900833 98901069 -49882403 + MIR SINE MIR 2 262 0 296 311 179 20 chr11 98901214 98901365 -49882107 + MIR3 SINE MIR 15 189 -19 718 286 31 20 chr11 98901939 98902194 -49881278 - MIR SINE MIR -3 259 2 607 288 26 35 chr11 98902340 98902569 -49880903 - MIR SINE MIR -34 228 2 323 206 49 10 chr11 98905372 98905474 -49877998 + L1ME4a LINE L1 5968 6073 -48 211 421 136 8 chr11 98905869 98906111 -49877361 - L2 LINE L2 -5 3267 2995 1367 172 12 4 chr11 98906124 98906374 -49877098 + L1M3f LINE L1 1 252 -5076 543 263 15 7 chr11 98906374 98906511 -49876961 - AluJo SINE Alu -133 179 42 687 169 42 0 chr11 98906530 98906672 -49876800 - L1M3f LINE L1 -4552 776 629 2525 167 19 56 chr11 98906691 98907225 -49876247 + L1M3f LINE L1 263 776 -4552 1049 243 4 19 chr11 98907244 98907503 -49875969 + AluJo SINE Alu 42 296 -16 4103 238 26 24 chr11 98907515 98908945 -49874527 + L1M3f LINE L1 772 2204 -4124 28078 60 3 0 chr11 98908952 98912716 -49870756 + L1P LINE L1 1 3775 -2371 466 259 49 70 chr11 98912817 98913285 -49870187 + MLT1F1 LTR MaLR 107 561 0 325 195 80 44 chr11 98913486 98913599 -49869873 - L2 LINE L2 -15 3298 3182 288 224 79 40 chr11 98913731 98913807 -49869665 + MER69 DNA AcHobo 2 80 -1146 186 103 0 0 chr11 98913828 98913857 -49869615 + (CA)n Simple_repeat Simple_repeat 1 29 0 260 186 0 14 chr11 98913881 98913951 -49869521 + C-rich Low_complexity Low_complexity 3 71 0 180 200 0 0 chr11 98914002 98914052 -49869420 + C-rich Low_complexity Low_complexity 1 50 0 2367 150 25 25 chr11 98914423 98914857 -49868615 + Tigger2a DNA MER2_type 1 434 0 328 238 53 80 chr11 98914858 98915009 -49868463 + L1ME4a LINE L1 5938 6084 -37 9055 67 2 1 chr11 98916007 98917274 -49866198 + L1P LINE L1 3991 5258 -888 280 340 96 6 chr11 98917691 98917847 -49865625 - MIR SINE MIR -75 187 18 263 31 0 0 chr11 98918266 98918298 -49865174 - tRNA-Ile-ATT tRNA tRNA -38 39 8 692 11 0 22 chr11 98918298 98918388 -49865084 + L1PA3 LINE L1 6068 6155 0 2095 129 30 82 chr11 98918667 98919107 -49864365 - MSTB LTR MaLR -9 417 1 763 120 0 9 chr11 98919288 98919396 -49864076 + AluSc SINE Alu 100 206 -103 364 167 14 42 chr11 98919400 98919472 -49864000 - MER5A DNA MER1_type -111 78 9 742 136 32 0 chr11 98919490 98919615 -49863857 + FLAM_C SINE Alu 3 131 -12 11392 36 6 6 chr11 98919962 98922140 -49861332 + L1PA4 LINE L1 4001 6155 0 8016 183 25 7 chr11 98922144 98923986 -49859486 + L1MA4 LINE L1 2930 4806 -1340 4468 175 17 29 chr11 98924331 98924616 -49858856 + L1MA4 LINE L1 5318 5605 -695 2189 56 0 7 chr11 98924616 98924886 -49858586 + AluY SINE Alu 43 310 -1 4468 175 17 29 chr11 98924886 98925581 -49857891 + L1MA4 LINE L1 5605 6287 -13 378 252 19 0 chr11 98925911 98926014 -49857458 - MIR SINE MIR 0 262 158 * 477 339 83 56 chr11 98926012 98926714 -49856758 - L2 LINE L2 -884 2430 1710 4066 177 15 20 chr11 98926834 98926896 -49856576 - L1MC1 LINE L1 0 6333 6272 1888 155 21 115 chr11 98926896 98927373 -49856099 + MSTB1 LTR MaLR 1 432 0 4066 177 15 20 chr11 98927373 98928128 -49855344 - L1MC1 LINE L1 -61 6272 5520 2383 147 53 93 chr11 98928143 98928603 -49854869 - L1MB4 LINE L1 -59 6121 5650 266 103 0 0 chr11 98928603 98928642 -49854830 - tRNA-Glu-GAG tRNA tRNA -36 39 1 2383 147 53 93 chr11 98928642 98928748 -49854724 - L1MB4 LINE L1 -530 5650 5541 273 293 164 54 chr11 98929021 98929465 -49854007 - L2 LINE L2 -605 2709 2217 240 245 0 20 chr11 98929495 98929544 -49853928 - MIR SINE MIR -181 81 34 390 359 125 36 chr11 98932234 98932618 -49850854 - L2 LINE L2 -3 3269 2852 235 379 15 23 chr11 98933063 98933195 -49850277 - L2 LINE L2 -5 3267 3137 3735 49 4 25 chr11 98933264 98933754 -49849718 - L1PA5 LINE L1 -7 6147 5668 371 354 18 0 chr11 98933775 98933888 -49849584 + L2 LINE L2 3153 3267 -5 200 269 19 0 chr11 98933878 98933930 -49849542 - L2 LINE L2 -8 3264 3212 * 618 201 83 7 chr11 98933897 98934041 -49849431 - MIR SINE MIR -21 241 87 874 183 35 0 chr11 98934061 98934230 -49849242 + MER20 DNA MER1_type 45 219 0 237 304 0 0 chr11 98934345 98934401 -49849071 + L2 LINE L2 3205 3260 -12 1758 173 12 3 chr11 98934741 98935070 -49848402 - L1MA9 LINE L1 -301 6011 5680 382 129 0 0 chr11 98935070 98935132 -49848340 + L1MA9 LINE L1 6247 6308 -4 2995 182 15 2 chr11 98935150 98935743 -49847729 + L1MB7 LINE L1 5550 6150 -34 524 198 34 25 chr11 98935744 98936071 -49847401 + MER57A LTR ERV1 1 403 0 16338 42 2 0 chr11 98937104 98939883 -49843589 + L1PA3 LINE L1 3373 6152 -3 23 33 0 0 chr11 98939883 98939913 -49843559 + AT_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr11 98940861 98940888 -49842584 + AT_rich Low_complexity Low_complexity 1 27 0 216 220 20 20 chr11 98941415 98941465 -49842007 - L2 LINE L2 -7 3265 3216 24 0 0 0 chr11 98941475 98941499 -49841973 + AT_rich Low_complexity Low_complexity 1 24 0 185 341 45 11 chr11 98942465 98942553 -49840919 - MIR SINE MIR -132 130 40 203 354 15 0 chr11 98942560 98942625 -49840847 + L2 LINE L2 3203 3268 -4 401 279 110 0 chr11 98943472 98943608 -49839864 - MIR SINE MIR -6 256 106 307 354 69 0 chr11 98945711 98945855 -49837617 + MIR SINE MIR 36 189 -73 356 335 40 7 chr11 98945891 98946043 -49837429 - MIR SINE MIR -1 261 105 323 272 325 21 chr11 98946286 98946569 -49836903 - L3 LINE CR1 -125 1452 1084 30 0 0 0 chr11 98946810 98946840 -49836632 + AT_rich Low_complexity Low_complexity 1 30 0 295 304 141 15 chr11 98947127 98947262 -49836210 + MIR SINE MIR 59 210 -52 1796 186 62 5 chr11 98947617 98947989 -49835483 - MLT2C1 LTR ERVL -4 393 1 281 248 121 6 chr11 98948175 98948332 -49835140 - MER69 DNA AcHobo 0 2526 2352 * 1240 195 22 24 chr11 98948309 98948679 -49834793 + MER69 DNA AcHobo 1507 1875 -651 277 169 28 0 chr11 98948668 98948739 -49834733 + MER69 DNA AcHobo 2306 2378 -148 * 1733 247 76 38 chr11 98948727 98949282 -49834190 - MER69 DNA AcHobo -540 686 111 189 143 32 16 chr11 98949284 98949347 -49834125 + (TA)n Simple_repeat Simple_repeat 1 64 0 270 221 39 26 chr11 98949482 98949559 -49833913 - MLT1G1 LTR MaLR -513 82 5 348 327 25 44 chr11 98950566 98950725 -49832747 - MIR SINE MIR -105 157 2 192 77 0 0 chr11 98950814 98950840 -49832632 + (TATAA)n Simple_repeat Simple_repeat 4 29 0 439 268 52 26 chr11 98950882 98951035 -49832437 - MIR SINE MIR 0 262 106 425 255 27 33 chr11 98952276 98952460 -49831012 - L1MDa LINE L1 -3772 2768 2586 1504 287 35 34 chr11 98952480 98953268 -49830204 + L1PB3 LINE L1 3 791 -6072 2188 149 37 17 chr11 98953387 98953690 -49829782 + L1PB3 LINE L1 1260 1555 -5308 2260 141 8 19 chr11 98953690 98954058 -49829414 - THE1B LTR MaLR 0 364 1 2188 149 37 17 chr11 98954058 98954593 -49828879 + L1PB3 LINE L1 1555 2118 -4745 * 11882 201 34 17 chr11 98954592 98958529 -49824943 + L1PB3 LINE L1 2488 6519 -351 348 24 0 0 chr11 98958529 98958570 -49824902 + (CA)n Simple_repeat Simple_repeat 2 42 0 11882 201 34 17 chr11 98958570 98958925 -49824547 + L1PB3 LINE L1 6519 6866 -4 231 36 0 0 chr11 98958937 98958965 -49824507 + (CA)n Simple_repeat Simple_repeat 2 29 0 3991 238 62 20 chr11 98958967 98960507 -49822965 - L1MDa LINE L1 -3954 2586 983 376 319 62 51 chr11 98960890 98961154 -49822318 - L1MDa LINE L1 -5584 956 418 400 245 125 66 chr11 98961211 98961546 -49821926 - L1MDa LINE L1 -6124 416 62 596 302 133 0 chr11 98962600 98962825 -49820647 - MIR SINE MIR -6 256 2 873 222 10 0 chr11 98963883 98964090 -49819382 - MER3 DNA MER1_type 0 209 1 486 284 74 42 chr11 98964940 98965130 -49818342 - MIR SINE MIR -13 249 54 437 319 84 24 chr11 98966379 98966592 -49816880 + MIR SINE MIR 9 234 -28 699 197 48 128 chr11 98966668 98966958 -49816514 + MLT1B LTR MaLR 3 235 -155 684 184 24 42 chr11 98966969 98967137 -49816335 - MLT1A2 LTR MaLR -198 176 12 358 188 25 0 chr11 98967349 98967429 -49816043 - MLT1A2 LTR MaLR -292 82 1 296 322 129 23 chr11 98967536 98967707 -49815765 - L2 LINE L2 -70 3202 3014 271 172 31 47 chr11 98967743 98967807 -49815665 + L2 LINE L2 3251 3313 0 237 345 24 12 chr11 98967931 98968015 -49815457 + MIR SINE MIR 16 100 -108 209 152 43 0 chr11 98968271 98968317 -49815155 - L2 LINE L2 0 3313 3266 28 29 0 0 chr11 98968370 98968405 -49815067 + AT_rich Low_complexity Low_complexity 1 35 0 566 272 38 13 chr11 98968814 98968972 -49814500 - MIR3 SINE MIR -4 204 43 844 206 0 0 chr11 98968972 98969127 -49814345 - MER58A DNA MER1_type 0 155 1 251 291 156 80 chr11 98969344 98969543 -49813929 - MIR SINE MIR -13 249 36 221 349 60 47 chr11 98969891 98970040 -49813432 + MIR3 SINE MIR 44 194 -14 341 380 68 6 chr11 98970562 98970725 -49812747 + L3 LINE CR1 1403 1575 -2 307 236 42 0 chr11 98971149 98971221 -49812251 - L2 LINE L2 -1 3312 3238 466 276 32 32 chr11 98971413 98971536 -49811936 - MIR3 SINE MIR -35 173 51 464 263 123 18 chr11 98972379 98972550 -49810922 - MIR SINE MIR -15 247 59 773 310 56 39 chr11 98973317 98973672 -49809800 - LTR16A1 LTR ERVL -51 406 46 3248 85 2 2 chr11 98973697 98974146 -49809326 + L1PA11 LINE L1 5503 5951 -223 1305 103 69 0 chr11 98974246 98974450 -49809022 + L1PA11 LINE L1 5957 6174 0 704 320 44 51 chr11 98974654 98975225 -49808247 - HERV16 LTR ERVL -417 5347 4781 387 0 0 0 chr11 98975807 98975850 -49807622 + (TC)n Simple_repeat Simple_repeat 2 44 0 243 0 0 0 chr11 98975849 98975876 -49807596 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 544 348 42 23 chr11 98975927 98976405 -49807067 - HERV16 LTR ERVL -1734 3751 3269 1068 313 16 3 chr11 98976445 98976809 -49806663 - HERV16 LTR ERVL -1976 3020 2652 651 315 86 14 chr11 98977031 98977452 -49806020 - HERV16 LTR ERVL -2415 2595 2158 734 353 71 12 chr11 98977488 98978361 -49805111 - HERV16 LTR ERVL -2952 2044 1056 1432 304 63 33 chr11 98978452 98979339 -49804133 - HERV16 LTR ERVL -4055 941 28 425 268 95 45 chr11 98979465 98979708 -49803764 - LTR16A1 LTR ERVL -202 255 1 1625 184 21 17 chr11 98980152 98980440 -49803032 + AluJo SINE Alu 1 289 -23 295 325 145 0 chr11 98981174 98981289 -49802183 - MIR3 SINE MIR -28 180 49 500 280 173 9 chr11 98981289 98981514 -49801958 + MIR SINE MIR 1 262 0 326 284 71 16 chr11 98981571 98981698 -49801774 + MIR SINE MIR 48 181 -81 354 330 31 20 chr11 98981885 98982080 -49801392 - MIR SINE MIR -62 146 1 2003 90 7 21 chr11 98982697 98982976 -49800496 - AluSq SINE Alu -2 311 37 345 213 12 25 chr11 98983238 98983318 -49800154 - MIR SINE MIR -105 157 79 386 316 28 85 chr11 98983379 98983626 -49799846 + MIR SINE MIR 20 252 -10 1748 158 37 70 chr11 98983990 98984420 -49799052 - L1MA9 LINE L1 0 6312 5897 * 4230 255 70 49 chr11 98984418 98987927 -49795545 - L1 LINE L1 -2913 3297 5 496 271 43 71 chr11 98987933 98988143 -49795329 - MIR SINE MIR -54 208 5 2408 69 0 0 chr11 98988198 98988489 -49794983 - AluY SINE Alu -19 292 2 221 289 0 75 chr11 98989519 98989678 -49793794 + A-rich Low_complexity Low_complexity 4 150 0 186 358 21 11 chr11 98989775 98989870 -49793602 - MIR SINE MIR -6 256 161 1657 299 96 48 chr11 98990482 98991539 -49791933 - L2 LINE L2 -526 2788 1682 206 217 22 0 chr11 98991906 98991952 -49791520 - L2 LINE L2 -5 3308 3262 2200 112 3 13 chr11 98992618 98992930 -49790542 + AluSx SINE Alu 1 309 -3 764 215 0 0 chr11 98992961 98993145 -49790327 - FLAM_A SINE Alu 0 184 1 1410 179 77 87 chr11 98993637 98994029 -49789443 - MLT1B LTR MaLR 0 390 3 543 278 26 12 chr11 98994071 98994360 -49789112 + LTR16A LTR ERVL 120 447 -3 340 362 107 6 chr11 98994661 98994838 -49788634 - MIR SINE MIR -48 214 20 240 298 190 16 chr11 98996061 98996182 -49787290 + MIR SINE MIR 48 189 -73 618 223 147 38 chr11 98996286 98996470 -49787002 - MIR SINE MIR -4 258 55 356 283 106 0 chr11 98997656 98997769 -49785703 + L2 LINE L2 3189 3313 0 230 184 0 41 chr11 98997779 98997828 -49785644 - L2 LINE L2 -10 3303 3257 356 119 0 167 chr11 98997884 98997968 -49785504 - LTR8A LTR ERV1 -2 725 656 2145 24 50 40 chr11 98998002 98998299 -49785173 + SVA Other Other 2 301 -1085 292 133 0 0 chr11 98998422 98998467 -49785005 + L1MC4 LINE L1 7685 7729 -313 638 261 114 4 chr11 98998470 98998715 -49784757 + L1MC4 LINE L1 7770 8041 -1 183 100 0 0 chr11 98998719 98998749 -49784723 + (A)n Simple_repeat Simple_repeat 1 30 0 1994 171 0 0 chr11 98998760 98999065 -49784407 + AluSx SINE Alu 1 305 -7 2370 178 114 25 chr11 98999065 98999671 -49783801 - LTR8A LTR ERV1 -67 660 1 219 244 39 26 chr11 99000152 99000230 -49783242 + GA-rich Low_complexity Low_complexity 2 80 0 309 303 11 11 chr11 99000283 99000372 -49783100 - MER5A DNA MER1_type -2 187 99 181 304 17 43 chr11 99002061 99002176 -49781296 + L2 LINE L2 3158 3269 -44 6509 68 14 42 chr11 99005450 99006428 -49777044 - SVA Other Other -6 1380 430 768 65 40 16 chr11 99006441 99006565 -49776907 - SVA Other Other -520 866 740 192 238 0 0 chr11 99008036 99008078 -49775394 - L2 LINE L2 -70 3202 3161 219 390 83 71 chr11 99008778 99008890 -49774582 + L2 LINE L2 2860 2969 -303 315 0 0 0 chr11 99008890 99008925 -49774547 + (CA)n Simple_repeat Simple_repeat 2 36 0 219 390 83 71 chr11 99008925 99009220 -49774252 + L2 LINE L2 2969 3272 0 334 272 23 12 chr11 99010060 99010233 -49773239 + (TA)n Simple_repeat Simple_repeat 2 176 0 272 150 62 0 chr11 99010257 99010337 -49773135 + (TA)n Simple_repeat Simple_repeat 2 86 0 227 304 0 0 chr11 99010802 99010858 -49772614 + L2 LINE L2 3007 3062 -210 720 208 0 0 chr11 99010860 99010980 -49772492 - FRAM SINE Alu -56 120 1 232 290 276 7 chr11 99011002 99011147 -49772325 + L2 LINE L2 3088 3271 -1 41173 47 2 6 chr11 99011201 99016684 -49766788 + L1P1 LINE L1 1 5460 -695 363 343 41 6 chr11 99017757 99017929 -49765543 - MIR SINE MIR -2 260 83 23 54 0 0 chr11 99018669 99018706 -49764766 + AT_rich Low_complexity Low_complexity 1 37 0 531 320 95 29 chr11 99018810 99019341 -49764131 + L2 LINE L2 2481 3272 0 760 241 58 8 chr11 99019975 99020204 -49763268 - MER63C DNA MER1_type -138 922 679 2387 67 3 0 chr11 99020204 99020502 -49762970 - AluY SINE Alu -12 299 1 760 241 58 8 chr11 99020502 99020513 -49762959 - MER63C DNA MER1_type -381 679 670 255 255 0 64 chr11 99020515 99020609 -49762863 - MIR SINE MIR -71 191 104 2466 220 34 14 chr11 99021764 99022413 -49761059 + MER63C DNA MER1_type 21 682 -248 2244 110 3 0 chr11 99022414 99022714 -49760758 + AluSx SINE Alu 1 301 -11 330 80 0 0 chr11 99022715 99022765 -49760707 + Alu SINE Alu 249 298 -3 22 0 0 0 chr11 99022820 99022842 -49760630 + AT_rich Low_complexity Low_complexity 1 22 0 282 229 68 102 chr11 99024277 99024319 -49759153 - MIR SINE MIR -123 139 97 1848 172 34 0 chr11 99024319 99024616 -49758856 + AluSx SINE Alu 1 307 -5 282 229 68 102 chr11 99024616 99024691 -49758781 - MIR SINE MIR -165 97 26 207 0 0 0 chr11 99024697 99024720 -49758752 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 268 336 40 0 chr11 99024886 99025011 -49758461 + L2 LINE L2 2932 3061 -211 230 198 21 21 chr11 99025147 99025243 -49758229 - Charlie7 DNA MER1_type -63 2549 2454 801 253 111 6 chr11 99025273 99025589 -49757883 - Charlie7 DNA MER1_type -1896 716 368 301 275 77 0 chr11 99025986 99026077 -49757395 - MIR SINE MIR -36 226 129 402 85 0 0 chr11 99026131 99026190 -49757282 + (TG)n Simple_repeat Simple_repeat 1 59 0 870 276 119 47 chr11 99026222 99026589 -49756883 - L2 LINE L2 0 3313 2974 1965 170 124 9 chr11 99026589 99027042 -49756430 + MLT1D LTR MaLR 1 505 0 870 276 119 47 chr11 99027042 99027208 -49756264 - L2 LINE L2 -339 2974 2821 1490 165 19 89 chr11 99027208 99027524 -49755948 - AluJo SINE Alu -18 294 1 870 276 119 47 chr11 99027524 99027596 -49755876 - L2 LINE L2 -492 2821 2634 1447 97 0 0 chr11 99027707 99027929 -49755543 + AluSg/x SINE Alu 103 324 0 271 333 30 13 chr11 99028236 99028470 -49755002 - HAL1 LINE L1 -851 1656 1419 25 0 0 0 chr11 99028768 99028793 -49754679 + AT_rich Low_complexity Low_complexity 1 25 0 427 268 8 92 chr11 99029013 99029203 -49754269 - L1ME3 LINE L1 -206 5956 5788 1595 143 82 21 chr11 99029203 99029483 -49753989 + AluJo SINE Alu 1 297 -15 427 268 8 92 chr11 99029483 99029531 -49753941 - L1ME3 LINE L1 -374 5788 5738 350 207 94 74 chr11 99029646 99029972 -49753500 - L1ME3 LINE L1 -743 5403 5149 270 300 33 0 chr11 99030373 99030463 -49753009 + CT-rich Low_complexity Low_complexity 4 96 0 2196 125 0 0 chr11 99030860 99031164 -49752308 - AluSx SINE Alu -8 304 1 207 297 95 0 chr11 99031631 99031705 -49751767 + MIR SINE MIR 35 115 -93 273 314 4 2 chr11 99032760 99032853 -49750619 - MIR SINE MIR -85 123 30 224 30 30 0 chr11 99033031 99033064 -49750408 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 1928 136 4 0 chr11 99033064 99033343 -49750129 - AluSx SINE Alu -32 280 1 795 233 6 6 chr11 99034424 99034600 -49748872 - AluJb SINE Alu 0 312 137 300 247 45 0 chr11 99035031 99035120 -49748352 - LTR16A1 LTR ERVL -81 376 284 640 267 20 0 chr11 99035190 99035336 -49748136 - MER58A DNA MER1_type 0 150 2 416 276 55 65 chr11 99035337 99035489 -49747983 - LTR16A1 LTR ERVL -185 272 123 961 205 11 0 chr11 99035489 99035674 -49747798 - MER5A DNA MER1_type 0 189 3 416 276 55 65 chr11 99035674 99035796 -49747676 - LTR16A1 LTR ERVL -334 123 1 204 40 0 0 chr11 99036488 99036513 -49746959 + (A)n Simple_repeat Simple_repeat 1 25 0 603 234 64 14 chr11 99036665 99036806 -49746666 + FRAM SINE Alu 1 148 -28 285 29 0 0 chr11 99036806 99036840 -49746632 + (CA)n Simple_repeat Simple_repeat 2 35 0 240 35 0 0 chr11 99036898 99036927 -49746545 + (CATATA)n Simple_repeat Simple_repeat 6 34 0 644 254 64 18 chr11 99037337 99037617 -49745855 + L1ME3A LINE L1 5582 5874 -296 288 295 95 19 chr11 99037445 99037655 -49745817 + L1MB1 LINE L1 5697 5922 -246 * 4300 256 36 40 chr11 99037643 99039330 -49744142 + L1ME LINE L1 21 1706 -4850 1196 261 70 63 chr11 99039403 99040204 -49743268 + L1M1 LINE L1 2752 3634 -4112 508 169 11 90 chr11 99040769 99040947 -49742525 + L1MC5 LINE L1 7751 7914 -47 249 29 0 0 chr11 99041011 99041046 -49742426 - L1MA3 LINE L1 0 6305 6271 3373 231 58 31 chr11 99041181 99042330 -49741142 + L1ME LINE L1 4933 6120 -841 2065 84 0 11 chr11 99042330 99042603 -49740869 + AluSx SINE Alu 17 286 -26 3373 231 58 31 chr11 99042603 99042741 -49740731 + L1ME LINE L1 6120 6253 -708 230 273 0 0 chr11 99042739 99042816 -49740656 + L1MC3 LINE L1 6075 6151 -1634 * 217 333 197 5 chr11 99042848 99043046 -49740426 + L3 LINE CR1 801 1036 -541 634 120 0 88 chr11 99043049 99043174 -49740298 - AluSg/x SINE Alu -1 309 196 229 322 23 11 chr11 99043389 99043476 -49739996 - L2 LINE L2 -1 3312 3225 196 346 0 0 chr11 99044070 99044122 -49739350 - L2 LINE L2 -18 3254 3203 1927 119 26 20 chr11 99044504 99044807 -49738665 - AluSx SINE Alu 0 312 8 998 159 24 60 chr11 99045367 99045664 -49737808 + THE1A LTR MaLR 72 355 0 1162 183 75 14 chr11 99045742 99046037 -49737435 + LTR54B LTR ERV1 175 487 -11 584 296 18 12 chr11 99047718 99047887 -49735585 - MIR SINE MIR -71 191 22 259 373 18 125 chr11 99048264 99048647 -49734825 - L2 LINE L2 -6 3266 2925 1518 224 39 45 chr11 99048708 99049173 -49734299 - MLT1C LTR MaLR 0 467 6 578 214 116 35 chr11 99050626 99050911 -49732561 - L1ME4a LINE L1 0 6121 5814 475 259 22 29 chr11 99052313 99052452 -49731020 + MIR SINE MIR 122 259 -3 221 259 161 25 chr11 99053314 99053395 -49730077 - MIR SINE MIR -5 257 166 365 247 86 0 chr11 99053404 99053497 -49729975 + L2 LINE L2 3152 3252 -20 268 301 102 50 chr11 99053498 99053646 -49729826 - MIR3 SINE MIR -81 127 1 225 94 0 0 chr11 99054287 99054319 -49729153 + (TG)n Simple_repeat Simple_repeat 1 32 0 1088 174 27 0 chr11 99057053 99057237 -49726235 - MER5A DNA MER1_type 0 189 1 1997 152 10 0 chr11 99058075 99058449 -49725023 + AluSx SINE Alu 1 377 0 1716 162 46 32 chr11 99059216 99059586 -49723886 + THE1C LTR MaLR 1 375 0 406 338 33 7 chr11 99060200 99060351 -49723121 + L2 LINE L2 3159 3313 0 1358 212 63 44 chr11 99060672 99061083 -49722389 + MER97c DNA MER1_type? 2 420 -670 379 259 56 37 chr11 99061121 99061283 -49722189 - LTR16C LTR ERVL 0 491 327 203 271 259 12 chr11 99061782 99061867 -49721605 - L2 LINE L2 -13 3259 3154 1401 210 10 43 chr11 99061931 99062231 -49721241 - AluJo SINE Alu -22 290 1 275 0 29 0 chr11 99063470 99063505 -49719967 + (TC)n Simple_repeat Simple_repeat 2 37 0 * 387 0 0 0 chr11 99063504 99063547 -49719925 + (TG)n Simple_repeat Simple_repeat 2 44 0 245 275 68 49 chr11 99063973 99064148 -49719324 + MIR SINE MIR 37 211 -51 180 0 0 0 chr11 99064683 99064703 -49718769 + (CGG)n Simple_repeat Simple_repeat 1 20 0 219 139 0 0 chr11 99067261 99067297 -49716175 + (T)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr11 99067441 99067462 -49716010 + AT_rich Low_complexity Low_complexity 1 21 0 279 130 0 0 chr11 99068996 99069050 -49714422 + (T)n Simple_repeat Simple_repeat 1 54 0 213 39 0 0 chr11 99069313 99069339 -49714133 + (T)n Simple_repeat Simple_repeat 1 26 0 2150 130 0 0 chr11 99069812 99070120 -49713352 - AluSx SINE Alu -4 308 1 30 0 0 0 chr11 99070123 99070153 -49713319 + AT_rich Low_complexity Low_complexity 1 30 0 219 36 0 0 chr11 99072155 99072183 -49711289 + (T)n Simple_repeat Simple_repeat 1 28 0 2229 98 0 20 chr11 99074010 99074148 -49709324 + AluSx SINE Alu 1 140 -172 2250 120 0 3 chr11 99074148 99074447 -49709025 + AluSg SINE Alu 2 299 -11 2229 98 0 20 chr11 99074447 99074614 -49708858 + AluSx SINE Alu 140 300 -12 312 298 177 11 chr11 99077434 99077615 -49705857 - MIR SINE MIR -3 259 49 21 0 0 0 chr11 99078200 99078221 -49705251 + AT_rich Low_complexity Low_complexity 1 21 0 661 213 90 81 chr11 99078517 99078728 -49704744 - MIR SINE MIR -41 221 9 240 303 110 48 chr11 99082018 99082163 -49701309 - L2 LINE L2 -1 3271 3118 22 0 0 0 chr11 99083371 99083393 -49700079 + AT_rich Low_complexity Low_complexity 1 22 0 504 168 84 0 chr11 99083817 99083924 -49699548 + MER53 DNA DNA 1 116 -73 592 263 8 0 chr11 99084141 99084259 -49699213 - MER5A DNA MER1_type 0 189 71 422 37 0 0 chr11 99084263 99084317 -49699155 - L1PA7 LINE L1 -710 5444 5391 5753 52 3 1 chr11 99084317 99085022 -49698450 + L1PA7 LINE L1 5437 6150 -4 299 269 15 0 chr11 99085022 99085089 -49698383 - MER5A DNA MER1_type -120 69 2 1255 194 5 0 chr11 99085106 99085328 -49698144 - MER58A DNA MER1_type -1 223 1 273 296 122 87 chr11 99085363 99086758 -49696714 - L2 LINE L2 -1189 2125 682 21 0 0 0 chr11 99087342 99087363 -49696109 + AT_rich Low_complexity Low_complexity 1 21 0 846 217 12 0 chr11 99087441 99087602 -49695870 + FAM SINE Alu 4 166 -9 393 277 168 19 chr11 99088491 99088646 -49694826 - MIR3 SINE MIR -7 201 24 21 36 0 0 chr11 99089685 99089713 -49693759 + AT_rich Low_complexity Low_complexity 1 28 0 321 296 108 32 chr11 99090739 99090925 -49692547 - MIR SINE MIR 0 262 63 375 276 26 90 chr11 99091309 99091465 -49692007 - L2 LINE L2 -4 3309 3164 183 167 0 0 chr11 99092229 99092271 -49691201 + CT-rich Low_complexity Low_complexity 2 43 0 250 268 61 37 chr11 99092331 99092413 -49691059 + MER5B DNA MER1_type 4 87 -91 2089 128 0 0 chr11 99094331 99094620 -49688852 - AluSq SINE Alu -24 289 1 34 69 0 29 chr11 99094868 99094970 -49688502 + AT_rich Low_complexity Low_complexity 1 99 0 270 361 23 31 chr11 99094977 99095107 -49688365 + L2 LINE L2 3144 3272 0 436 267 134 17 chr11 99095196 99095368 -49688104 + MIR SINE MIR 2 193 -69 22 56 0 0 chr11 99096007 99096043 -49687429 + AT_rich Low_complexity Low_complexity 1 36 0 469 309 52 56 chr11 99096275 99096527 -49686945 - MIR SINE MIR -7 255 5 187 259 118 47 chr11 99097811 99097896 -49685576 - L2 LINE L2 0 3313 3223 194 54 0 54 chr11 99099157 99099194 -49684278 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 27 49 0 0 chr11 99101497 99101538 -49681934 + AT_rich Low_complexity Low_complexity 1 41 0 260 53 26 0 chr11 99102923 99102961 -49680511 + (CA)n Simple_repeat Simple_repeat 2 40 0 180 0 0 0 chr11 99103228 99103248 -49680224 + (TG)n Simple_repeat Simple_repeat 2 21 0 192 235 137 0 chr11 99103508 99103559 -49679913 - L2 LINE L2 -17 3255 3198 300 291 70 0 chr11 99103571 99103657 -49679815 - MIR SINE MIR -93 169 78 309 342 25 17 chr11 99104968 99105088 -49678384 - L2 LINE L2 -35 3237 3117 1995 184 19 3 chr11 99105173 99105532 -49677940 - MLT1A1 LTR MaLR 0 365 1 556 249 99 20 chr11 99107733 99107934 -49675538 - MIR SINE MIR -43 219 3 31 26 0 0 chr11 99108081 99108119 -49675353 + AT_rich Low_complexity Low_complexity 1 38 0 2031 287 98 40 chr11 99109640 99110007 -49673465 + L2 LINE L2 1851 2195 -1118 1998 121 3 28 chr11 99110007 99110321 -49673151 + AluSq SINE Alu 1 307 0 2031 287 98 40 chr11 99110321 99111274 -49672198 + L2 LINE L2 2195 3311 -2 265 181 14 36 chr11 99116070 99116153 -49667319 + MLT1I LTR MaLR 70 135 -274 262 194 14 42 chr11 99116359 99116431 -49667041 + MLT1G LTR MaLR 505 574 -16 27 29 0 0 chr11 99116720 99116754 -49666718 + AT_rich Low_complexity Low_complexity 1 34 0 2807 153 22 0 chr11 99116960 99117462 -49666010 + L1PA16 LINE L1 5633 6145 -21 21 0 0 0 chr11 99117470 99117491 -49665981 + AT_rich Low_complexity Low_complexity 1 21 0 961 189 31 25 chr11 99117500 99117696 -49665776 + AluJb SINE Alu 92 288 -24 21 0 0 0 chr11 99119018 99119039 -49664433 + AT_rich Low_complexity Low_complexity 1 21 0 307 182 13 52 chr11 99119039 99119116 -49664356 - MIR SINE MIR -13 249 176 1427 139 41 0 chr11 99119164 99119431 -49664041 - L1MA4A LINE L1 -4 6299 6022 203 292 52 62 chr11 99119623 99119719 -49663753 - MIR SINE MIR -162 100 6 226 347 91 58 chr11 99120224 99120622 -49662850 + L2 LINE L2 2567 2977 -337 402 228 161 59 chr11 99120686 99121147 -49662325 + L1ME4a LINE L1 5614 6121 0 278 297 60 108 chr11 99121191 99121440 -49662032 + L2 LINE L2 3036 3272 0 1817 139 0 0 chr11 99121657 99121916 -49661556 - AluSx SINE Alu -17 295 37 1986 110 52 10 chr11 99122129 99122419 -49661053 + AluSx SINE Alu 1 302 -10 475 325 76 42 chr11 99122620 99122857 -49660615 + L2 LINE L2 3043 3287 -26 214 327 89 10 chr11 99123755 99123856 -49659616 + L2 LINE L2 3197 3305 -8 237 274 16 0 chr11 99124567 99124629 -49658843 + L2 LINE L2 3246 3308 -5 1238 214 102 3 chr11 99127826 99128148 -49655324 + L1MB1 LINE L1 5746 6099 -69 202 235 59 0 chr11 99128150 99128201 -49655271 - MIR3 SINE MIR -43 165 112 1288 253 83 102 chr11 99129029 99129251 -49654221 + L2 LINE L2 2245 2470 -843 297 0 0 0 chr11 99129251 99129284 -49654188 + (CA)n Simple_repeat Simple_repeat 2 34 0 1288 253 83 102 chr11 99129284 99130149 -49653323 + L2 LINE L2 2470 3313 0 2026 142 0 22 chr11 99130221 99130537 -49652935 + AluSx SINE Alu 1 309 -3 411 73 0 0 chr11 99130827 99130882 -49652590 + (CA)n Simple_repeat Simple_repeat 2 56 0 323 271 42 17 chr11 99130882 99131000 -49652472 - MIR SINE MIR -97 165 45 279 320 67 27 chr11 99131506 99131656 -49651816 + L2 LINE L2 2869 3024 -248 662 216 60 0 chr11 99132630 99132764 -49650708 + FAM SINE Alu 12 153 -32 551 14 0 14 chr11 99132766 99132835 -49650637 + (GGAA)n Simple_repeat Simple_repeat 3 70 0 288 0 0 0 chr11 99133238 99133270 -49650202 + (TA)n Simple_repeat Simple_repeat 1 32 0 1486 206 2 79 chr11 99133709 99134112 -49649360 - MLT1A2 LTR MaLR -2 372 1 276 274 59 39 chr11 99134831 99134933 -49648539 - L2 LINE L2 0 3272 3169 420 206 157 0 chr11 99135513 99135615 -49647857 + MER5B DNA MER1_type 10 127 -51 437 333 87 35 chr11 99135945 99136176 -49647296 + MIR SINE MIR 14 256 -6 235 304 118 29 chr11 99137016 99137118 -49646354 + L2 LINE L2 3200 3310 -3 204 372 13 0 chr11 99138347 99138425 -49645047 - L3b LINE CR1 -295 1288 1210 279 267 106 62 chr11 99139689 99139850 -49643622 - L2 LINE L2 -2 3311 3144 761 265 182 37 chr11 99140175 99140526 -49642946 + L2 LINE L2 2912 3313 0 204 97 0 0 chr11 99141750 99141781 -49641691 + (CA)n Simple_repeat Simple_repeat 2 32 0 226 242 15 0 chr11 99144619 99144685 -49638787 + L1MD3 LINE L1 7719 7785 -210 3075 202 32 19 chr11 99145013 99145789 -49637683 + L1MC4a LINE L1 7017 7802 -6 236 303 13 0 chr11 99146088 99146164 -49637308 + MER69 DNA AcHobo 2 78 -99 658 68 60 10 chr11 99146170 99146373 -49637099 + (TA)n Simple_repeat Simple_repeat 1 213 0 477 92 31 0 chr11 99146409 99146507 -49636965 + (TA)n Simple_repeat Simple_repeat 2 102 0 1508 180 10 44 chr11 99146509 99146804 -49636668 - AluJo SINE Alu -27 285 1 233 200 70 100 chr11 99146808 99146908 -49636564 + MER69 DNA AcHobo 2430 2526 0 183 129 0 0 chr11 99147842 99147873 -49635599 + (TG)n Simple_repeat Simple_repeat 1 31 0 315 71 0 0 chr11 99149079 99149121 -49634351 + (CA)n Simple_repeat Simple_repeat 2 43 0 520 187 0 0 chr11 99150229 99150336 -49633136 - L1PB4 LINE L1 -1 6155 6049 264 235 0 0 chr11 99150341 99150409 -49633063 + (TA)n Simple_repeat Simple_repeat 1 68 0 522 217 44 84 chr11 99150412 99150638 -49632834 - MER89-int LTR ERV1 -2469 4332 4116 29 28 0 0 chr11 99150640 99150676 -49632796 + AT_rich Low_complexity Low_complexity 1 36 0 250 179 0 0 chr11 99150719 99150775 -49632697 - L1MC4 LINE L1 -1339 6703 6648 198 312 11 32 chr11 99151834 99151927 -49631545 - MER5B DNA MER1_type 0 178 88 180 0 0 0 chr11 99152622 99152642 -49630830 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2135 104 0 0 chr11 99153250 99153559 -49629913 - AluSg SINE Alu 0 309 1 291 215 0 0 chr11 99155141 99155206 -49628266 + (TATATG)n Simple_repeat Simple_repeat 4 68 0 423 0 0 0 chr11 99155206 99155253 -49628219 + (GA)n Simple_repeat Simple_repeat 2 48 0 1656 171 8 0 chr11 99155253 99155516 -49627956 - AluJb SINE Alu -44 268 4 27 0 0 0 chr11 99155524 99155551 -49627921 + AT_rich Low_complexity Low_complexity 1 27 0 186 118 0 0 chr11 99156823 99156857 -49626615 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 180 235 157 0 chr11 99158679 99158730 -49624742 - L2 LINE L2 -72 3241 3183 186 43 0 0 chr11 99158772 99158795 -49624677 + (CAA)n Simple_repeat Simple_repeat 2 24 0 421 193 79 14 chr11 99159614 99159754 -49623718 + MER103 DNA DNA 3 151 -15 495 117 39 0 chr11 99159835 99159912 -49623560 - MADE1 DNA Mariner 0 80 1 2181 112 7 14 chr11 99160283 99160578 -49622894 + AluSx SINE Alu 1 293 -19 2440 54 0 3 chr11 99160849 99161144 -49622328 + AluY SINE Alu 1 294 -17 450 0 0 0 chr11 99161254 99161304 -49622168 + (CA)n Simple_repeat Simple_repeat 1 50 0 1301 226 173 12 chr11 99161316 99161511 -49621961 - MLT2B1 LTR ERVL -39 481 319 315 49 0 0 chr11 99161511 99161552 -49621920 + (GA)n Simple_repeat Simple_repeat 2 42 0 1301 226 173 12 chr11 99161552 99161767 -49621705 - MLT2B1 LTR ERVL -201 319 5 1545 160 3 59 chr11 99162628 99162934 -49620538 - AluJo SINE Alu -23 289 1 351 0 0 0 chr11 99164969 99165008 -49618464 + (TG)n Simple_repeat Simple_repeat 1 39 0 500 349 40 20 chr11 99166348 99166454 -49617018 + MIR SINE MIR 6 108 -154 1185 81 139 0 chr11 99166454 99166481 -49616991 - MER107 DNA MER1_type 0 197 175 182 36 0 36 chr11 99166481 99166509 -49616963 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1185 81 139 0 chr11 99166509 99166653 -49616819 - MER107 DNA MER1_type -22 175 2 500 349 40 20 chr11 99166653 99166795 -49616677 + MIR SINE MIR 108 259 -3 1829 156 7 3 chr11 99168097 99168386 -49615086 + AluJb SINE Alu 1 290 -22 24 32 0 0 chr11 99168437 99168468 -49615004 + AT_rich Low_complexity Low_complexity 1 31 0 471 121 30 20 chr11 99169603 99169702 -49613770 - L1MB2 LINE L1 -2 6169 6070 2286 110 3 0 chr11 99171424 99171732 -49611740 - AluSq SINE Alu -3 310 2 935 178 58 0 chr11 99173132 99173323 -49610149 - MER20 DNA MER1_type -1 218 17 306 300 96 92 chr11 99173385 99173832 -49609640 - L2 LINE L2 -5 3267 2819 2492 63 3 0 chr11 99173832 99174134 -49609338 + AluY SINE Alu 1 303 -8 2445 68 0 0 chr11 99175242 99175537 -49607935 - AluY SINE Alu -16 295 1 633 323 53 9 chr11 99175778 99176004 -49607468 - MIR SINE MIR -8 254 19 201 300 17 17 chr11 99176222 99176282 -49607190 - L2 LINE L2 -47 3266 3207 249 104 21 21 chr11 99176289 99176337 -49607135 - MLT2C2 LTR ERVL 0 464 417 2400 57 0 7 chr11 99176673 99176971 -49606501 + AluY SINE Alu 1 296 -15 11432 145 50 39 chr11 99177638 99178780 -49604692 - Tigger1 DNA MER2_type 0 2418 1290 1656 194 3 17 chr11 99178780 99179068 -49604404 - AluJo SINE Alu -27 285 2 11432 145 50 39 chr11 99179068 99180317 -49603155 - Tigger1 DNA MER2_type -1128 1290 1 2109 124 3 0 chr11 99181153 99181444 -49602028 - AluSc SINE Alu -17 292 1 433 246 39 46 chr11 99181624 99181754 -49601718 + MIR SINE MIR 63 191 -71 23 0 0 0 chr11 99182583 99182606 -49600866 + AT_rich Low_complexity Low_complexity 1 23 0 194 309 135 48 chr11 99184015 99184141 -49599331 - MIR3 SINE MIR -64 144 8 2216 160 16 0 chr11 99184693 99185067 -49598405 + MSTB1 LTR MaLR 20 399 -33 434 284 64 23 chr11 99185170 99185388 -49598084 - L1M4 LINE L1 -806 5340 5114 3033 100 31 41 chr11 99186325 99186834 -49596638 - LTR12 LTR ERV1 0 714 211 592 163 0 47 chr11 99186945 99187074 -49596398 - pTR5 LTR ERV1 -1578 860 738 433 267 58 23 chr11 99187351 99187523 -49595949 + MIR SINE MIR 24 201 -61 201 344 0 0 chr11 99189209 99189270 -49594202 + MIR SINE MIR 87 147 -61 183 287 172 11 chr11 99189354 99189441 -49594031 - MIR SINE MIR -92 116 16 351 0 0 0 chr11 99189777 99189816 -49593656 + (TG)n Simple_repeat Simple_repeat 1 39 0 189 0 0 0 chr11 99190706 99190727 -49592745 + (A)n Simple_repeat Simple_repeat 1 21 0 3809 166 26 21 chr11 99194845 99195566 -49587906 + MER44D DNA MER2_type 3 599 -6 317 194 28 0 chr11 99195662 99195734 -49587738 - MER103 DNA DNA -73 93 20 689 234 63 0 chr11 99196119 99196294 -49587178 + MER5A DNA MER1_type 1 186 -3 445 297 50 16 chr11 99196439 99196621 -49586851 + MIR3 SINE MIR 15 202 -6 416 287 207 23 chr11 99197303 99197477 -49585995 - MIR SINE MIR -10 252 47 894 233 108 13 chr11 99197664 99197896 -49585576 - MIR SINE MIR -1 261 8 422 272 70 0 chr11 99199397 99199511 -49583961 + MIR3 SINE MIR 87 208 0 227 333 0 0 chr11 99199608 99199680 -49583792 - L2 LINE L2 -9 3263 3192 412 274 138 31 chr11 99201035 99201418 -49582054 + L1ME4a LINE L1 5520 5943 -178 483 261 90 77 chr11 99202303 99202525 -49580947 + MIR SINE MIR 6 230 -32 394 277 138 31 chr11 99203208 99203591 -49579881 - L1ME4a LINE L1 -178 5943 5520 23 54 0 0 chr11 99207732 99207769 -49575703 + AT_rich Low_complexity Low_complexity 1 37 0 1487 233 42 11 chr11 99208141 99208501 -49574971 - MLT1A2 LTR MaLR -3 371 1 348 282 10 10 chr11 99208900 99209003 -49574469 - MIR SINE MIR -2 260 158 23 33 0 0 chr11 99209598 99209628 -49573844 + AT_rich Low_complexity Low_complexity 1 30 0 1583 183 16 47 chr11 99209628 99209950 -49573522 + AluJb SINE Alu 1 312 0 240 291 29 39 chr11 99210045 99210148 -49573324 - MIR3 SINE MIR -93 115 14 511 233 19 31 chr11 99210742 99210888 -49572584 - MER5A DNA MER1_type -1 188 30 6467 23 6 0 chr11 99211221 99212016 -49571456 - L1PA3 LINE L1 -1 6154 5355 712 214 69 103 chr11 99212516 99212866 -49570606 - MER46C DNA MER2_type 0 338 1 1900 117 25 23 chr11 99213189 99213522 -49569950 - THE1C LTR MaLR 0 375 1 303 267 273 37 chr11 99214569 99214756 -49568716 - MIR SINE MIR -12 250 20 429 263 91 50 chr11 99214931 99215129 -49568343 - MLT1I LTR MaLR -109 300 95 1352 211 40 54 chr11 99215160 99215530 -49567942 + MLT1A1 LTR MaLR 1 365 0 236 291 0 0 chr11 99215631 99215686 -49567786 - L2 LINE L2 -17 3255 3201 186 324 81 36 chr11 99215772 99215883 -49567589 - MIR SINE MIR -10 252 137 234 242 161 0 chr11 99216183 99216307 -49567165 + LTR33 LTR ERVL 1 144 -377 692 185 12 58 chr11 99216399 99216572 -49566900 + LTR33 LTR ERVL 355 519 -2 21 89 0 0 chr11 99216572 99216628 -49566844 + AT_rich Low_complexity Low_complexity 1 56 0 1734 179 0 32 chr11 99218800 99219112 -49564360 + AluJo SINE Alu 1 302 -10 216 278 10 62 chr11 99219233 99219330 -49564142 + CT-rich Low_complexity Low_complexity 1 92 0 1323 211 57 33 chr11 99221320 99221439 -49562033 + AluJo SINE Alu 1 116 -196 239 70 0 23 chr11 99221439 99221482 -49561990 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 1323 211 57 33 chr11 99221482 99221661 -49561811 + AluJo SINE Alu 116 306 -6 1622 218 67 10 chr11 99221901 99222382 -49561090 - MER69 DNA AcHobo 0 2526 2019 1089 292 60 21 chr11 99222385 99222820 -49560652 - MER69 DNA AcHobo -1725 801 350 309 239 49 9 chr11 99222842 99222958 -49560514 - L1MC4 LINE L1 -1339 6983 1987 753 257 181 0 chr11 99222988 99223276 -49560196 - MER69 DNA AcHobo -2186 340 1 1969 108 4 0 chr11 99223616 99223876 -49559596 + AluSc SINE Alu 43 303 -6 518 303 101 0 chr11 99225162 99225380 -49558092 - MIR SINE MIR -7 255 16 1682 124 16 8 chr11 99225443 99225692 -49557780 + AluSx SINE Alu 1 251 -61 657 186 0 108 chr11 99225803 99225997 -49557475 - MLT1B LTR MaLR -217 173 1 195 162 0 0 chr11 99226026 99226063 -49557409 + (CTATT)n Simple_repeat Simple_repeat 4 40 0 194 290 159 0 chr11 99226157 99226226 -49557246 + MIR SINE MIR 108 187 -75 24 0 0 0 chr11 99226775 99226799 -49556673 + AT_rich Low_complexity Low_complexity 1 24 0 228 292 17 8 chr11 99228145 99228265 -49555207 + L1M4 LINE L1 3341 3461 -2685 234 244 57 41 chr11 99228266 99228389 -49555083 + L1MCa LINE L1 140 264 -6300 * 643 306 52 26 chr11 99228384 99228694 -49554778 + L1MCa LINE L1 166 483 -5562 1871 225 42 56 chr11 99228846 99229725 -49553747 + L1MCa LINE L1 570 1441 -5032 1848 173 3 10 chr11 99229725 99230037 -49553435 + AluJb SINE Alu 3 312 0 1871 225 42 56 chr11 99230037 99230218 -49553254 + L1MCa LINE L1 1441 1623 -4850 1927 153 10 0 chr11 99231030 99231338 -49552134 + AluY SINE Alu 1 311 0 251 366 118 7 chr11 99231429 99231582 -49551890 - L2 LINE L2 -1 3271 3102 2670 183 42 12 chr11 99231904 99232407 -49551065 + MLT2B1 LTR ERVL 3 520 0 1736 167 21 3 chr11 99232766 99233048 -49550424 + AluJo SINE Alu 17 303 -9 239 220 0 121 chr11 99234645 99234736 -49548736 + L2 LINE L2 3234 3313 0 373 313 66 28 chr11 99235228 99235260 -49548212 + MIR SINE MIR 3 32 -230 1172 188 35 86 chr11 99235260 99235654 -49547818 - MLT1A2 LTR MaLR 0 374 1 373 313 66 28 chr11 99235654 99235860 -49547612 + MIR SINE MIR 32 250 -12 281 26 0 26 chr11 99236520 99236559 -49546913 + (TG)n Simple_repeat Simple_repeat 2 39 0 258 81 0 0 chr11 99237560 99237597 -49545875 + (TG)n Simple_repeat Simple_repeat 1 37 0 183 100 0 0 chr11 99237602 99237632 -49545840 + (GA)n Simple_repeat Simple_repeat 1 30 0 282 327 53 35 chr11 99238904 99239017 -49544455 + L2 LINE L2 3153 3267 -5 1938 194 6 6 chr11 99239907 99240272 -49543200 - MLT1A1 LTR MaLR 0 365 1 342 0 0 0 chr11 99241305 99241343 -49542129 + (TG)n Simple_repeat Simple_repeat 2 39 0 191 35 0 35 chr11 99242080 99242095 -49541377 + (TTTTTG)n Simple_repeat Simple_repeat 2 17 -12 1012 186 19 0 chr11 99242095 99242305 -49541167 - L1MB5 LINE L1 -8 6166 5953 191 35 0 35 chr11 99242305 99242318 -49541154 + (TTTTTG)n Simple_repeat Simple_repeat 17 29 0 1862 141 4 14 chr11 99242459 99242736 -49540736 + AluSq SINE Alu 1 274 -39 21 71 0 0 chr11 99242913 99242955 -49540517 + AT_rich Low_complexity Low_complexity 1 42 0 293 241 28 83 chr11 99244010 99244054 -49539418 - MER5A DNA MER1_type -87 102 57 3895 107 7 0 chr11 99244054 99244606 -49538866 - L1PA11 LINE L1 0 6174 5619 293 241 28 83 chr11 99244606 99244669 -49538803 - MER5A DNA MER1_type -132 57 1 * 1128 314 53 3 chr11 99244669 99245039 -49538433 - L3 LINE CR1 -801 776 388 215 329 0 0 chr11 99245057 99245130 -49538342 + GA-rich Low_complexity Low_complexity 4 76 0 2054 149 0 0 chr11 99246598 99246899 -49536573 - AluSx SINE Alu -11 301 1 1673 128 40 8 chr11 99247096 99247345 -49536127 + AluJb SINE Alu 1 257 -55 411 295 89 0 chr11 99247468 99247580 -49535892 + MIR SINE MIR 45 166 -96 219 265 0 0 chr11 99247806 99247855 -49535617 + L2 LINE L2 3265 3313 0 432 0 0 0 chr11 99248293 99248341 -49535131 + (TG)n Simple_repeat Simple_repeat 2 49 0 301 314 10 10 chr11 99250320 99250422 -49533050 - MIR SINE MIR -72 190 89 675 137 40 8 chr11 99250422 99250546 -49532926 - MLT1A2 LTR MaLR 0 374 247 293 276 198 32 chr11 99250836 99251053 -49532419 - MIR SINE MIR 0 262 10 279 170 0 0 chr11 99254069 99254116 -49529356 + L2 LINE L2 3226 3272 0 243 340 66 9 chr11 99255231 99255337 -49528135 + L2 LINE L2 3161 3272 0 1221 195 123 11 chr11 99255424 99255685 -49527787 + AluJb SINE Alu 9 298 -14 343 313 10 0 chr11 99255776 99255872 -49527600 + MIR SINE MIR 44 140 -122 21 36 0 0 chr11 99255908 99255936 -49527536 + AT_rich Low_complexity Low_complexity 1 28 0 477 190 116 8 chr11 99256148 99256269 -49527203 + L2 LINE L2 3180 3313 0 2204 115 0 0 chr11 99256812 99257108 -49526364 - AluSx SINE Alu -16 296 1 2044 150 0 3 chr11 99257929 99258236 -49525236 - AluSq SINE Alu -7 306 1 23 0 0 0 chr11 99258429 99258452 -49525020 + AT_rich Low_complexity Low_complexity 1 23 0 278 192 0 64 chr11 99259082 99259160 -49524312 + MER112 DNA MER1_type 11 83 -177 973 214 39 53 chr11 99259180 99259465 -49524007 - MLT1C LTR MaLR -14 453 173 2284 98 0 3 chr11 99259465 99259762 -49523710 + AluSx SINE Alu 17 312 0 251 277 122 70 chr11 99260679 99260950 -49522522 - L2 LINE L2 -8 3305 3021 272 238 167 48 chr11 99261328 99261496 -49521976 + MIR3 SINE MIR 8 195 -13 22 35 0 0 chr11 99261692 99261721 -49521751 + AT_rich Low_complexity Low_complexity 1 29 0 673 189 244 0 chr11 99263397 99263577 -49519895 + MER58A DNA MER1_type 1 224 0 211 360 34 34 chr11 99265240 99265387 -49518085 - MIR3 SINE MIR -59 149 3 336 276 57 0 chr11 99266820 99266943 -49516529 + MER94 DNA DNA 1 130 -4 181 291 36 18 chr11 99266969 99267024 -49516448 + L2 LINE L2 1425 1480 -1834 1587 199 60 0 chr11 99267036 99267367 -49516105 - MLT2C1 LTR ERVL -44 353 3 287 24 71 0 chr11 99267409 99267451 -49516021 + T-rich Low_complexity Low_complexity 2 46 0 310 268 121 69 chr11 99268115 99268537 -49514935 - L1ME4a LINE L1 -1 6120 5677 28225 120 19 54 chr11 99268740 99273861 -49509611 - L1PA7 LINE L1 -1 6153 1310 9548 29 17 0 chr11 99273861 99275783 -49507689 - L1PA4 LINE L1 -1 6154 4213 28225 120 19 54 chr11 99275783 99277038 -49506434 - L1PA7 LINE L1 -4844 1310 12 2228 97 0 29 chr11 99277079 99277389 -49506083 + AluY SINE Alu 1 301 -10 470 280 75 16 chr11 99277988 99278174 -49505298 + MIR SINE MIR 66 262 0 1970 176 98 9 chr11 99278253 99278673 -49504799 - LTR32 LTR ERVL 0 471 15 484 55 14 14 chr11 99278824 99278897 -49504575 + (TTCC)n Simple_repeat Simple_repeat 3 75 0 2005 154 3 6 chr11 99278899 99279210 -49504262 - AluSx SINE Alu -2 310 1 1678 163 0 78 chr11 99279453 99279785 -49503687 - AluJb SINE Alu -6 306 1 235 323 84 65 chr11 99280590 99280745 -49502727 - MIR3 SINE MIR -14 194 37 * 501 258 106 25 chr11 99280717 99280915 -49502557 + MIR SINE MIR 48 261 -1 189 94 0 0 chr11 99281241 99281273 -49502199 + (CAGAGA)n Simple_repeat Simple_repeat 2 33 0 361 293 139 35 chr11 99281527 99281769 -49501703 + L1ME4a LINE L1 5769 6053 -68 692 160 0 0 chr11 99281769 99281894 -49501578 - L1MB4 LINE L1 -1 6179 6055 361 293 139 35 chr11 99281894 99281968 -49501504 + L1ME4a LINE L1 6053 6118 -3 283 299 93 19 chr11 99282805 99282912 -49500560 - L2 LINE L2 -9 3263 3149 1848 157 19 19 chr11 99282977 99283289 -49500183 + AluJo SINE Alu 1 312 0 1030 242 83 19 chr11 99283511 99283874 -49499598 - LTR16C LTR ERVL -1 490 105 299 336 34 8 chr11 99284160 99284279 -49499193 + MIR SINE MIR 8 129 -133 227 29 57 0 chr11 99284986 99285021 -49498451 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 188 35 35 0 chr11 99285415 99285444 -49498028 + (TA)n Simple_repeat Simple_repeat 2 31 0 225 0 0 0 chr11 99285444 99285469 -49498003 + (T)n Simple_repeat Simple_repeat 1 25 0 24 0 0 0 chr11 99285489 99285513 -49497959 + GC_rich Low_complexity Low_complexity 1 24 0 2294 78 7 0 chr11 99286418 99286711 -49496761 + AluY SINE Alu 1 295 -16 207 69 0 0 chr11 99287530 99287559 -49495913 + (T)n Simple_repeat Simple_repeat 1 29 0 655 260 32 0 chr11 99287866 99288020 -49495452 + MIR SINE MIR 10 168 -94 206 265 167 10 chr11 99288048 99288150 -49495322 + MIR SINE MIR 136 253 -9 379 360 0 62 chr11 99288232 99288393 -49495079 + L2 LINE L2 3122 3272 0 219 69 0 0 chr11 99288954 99288983 -49494489 + (T)n Simple_repeat Simple_repeat 1 29 0 185 299 78 0 chr11 99289452 99289529 -49493943 + MIR SINE MIR 48 130 -132 247 266 211 9 chr11 99289910 99290019 -49493453 - MIR SINE MIR -48 214 84 730 205 40 67 chr11 99290291 99290515 -49492957 + MER20 DNA MER1_type 2 219 0 393 349 35 26 chr11 99290515 99290744 -49492728 - L2 LINE L2 -212 3060 2830 600 14 0 0 chr11 99291322 99291391 -49492081 + (TCCA)n Simple_repeat Simple_repeat 4 72 0 520 283 61 38 chr11 99291405 99291617 -49491855 + MIR SINE MIR 46 262 0 294 228 447 0 chr11 99291815 99291938 -49491534 + MIR SINE MIR 79 256 -6 203 336 92 30 chr11 99293001 99293132 -49490340 + MIR SINE MIR 2 140 -122 269 170 0 0 chr11 99293138 99293185 -49490287 - THE1C LTR MaLR 0 428 382 * 940 118 83 44 chr11 99293183 99293387 -49490085 - THE1C LTR MaLR -163 212 1 342 343 89 21 chr11 99293585 99293821 -49489651 - MIR SINE MIR -4 258 7 423 231 71 52 chr11 99294259 99294434 -49489038 - MIR SINE MIR -70 192 20 225 182 91 0 chr11 99295332 99295376 -49488096 + L2 LINE L2 3221 3268 -4 495 299 46 11 chr11 99296524 99296698 -49486774 - MIR SINE MIR -51 211 32 236 287 25 66 chr11 99297013 99297135 -49486337 - L2 LINE L2 -5 3267 3151 337 267 86 48 chr11 99298143 99298248 -49485224 - L2 LINE L2 -2 3270 3162 441 54 0 0 chr11 99298779 99298835 -49484637 + (TG)n Simple_repeat Simple_repeat 1 56 0 258 284 25 25 chr11 99299142 99299223 -49484249 + L2 LINE L2 3228 3308 -5 189 0 0 0 chr11 99299359 99299380 -49484092 + (TTTAA)n Simple_repeat Simple_repeat 3 23 0 909 312 133 33 chr11 99301116 99301806 -49481666 + L3 LINE CR1 680 1438 -139 306 311 57 0 chr11 99301934 99302040 -49481432 + MIR SINE MIR 49 160 -102 309 210 0 0 chr11 99302407 99302469 -49481003 - MIR SINE MIR -1 261 200 230 307 129 36 chr11 99302536 99302676 -49480796 - MIR3 SINE MIR -30 178 26 22 0 0 0 chr11 99302856 99302878 -49480594 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr11 99304752 99304773 -49478699 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 420 202 23 93 chr11 99304894 99305023 -49478449 - L2 LINE L2 0 3272 3153 195 129 0 0 chr11 99306012 99306043 -49477429 + (TTCTC)n Simple_repeat Simple_repeat 1 31 0 305 127 9 191 chr11 99306576 99306686 -49476786 - L1MC4 LINE L1 -1339 6703 6614 439 217 17 34 chr11 99306723 99306898 -49476574 + (CATATA)n Simple_repeat Simple_repeat 2 173 0 534 249 96 10 chr11 99308331 99308528 -49474944 + L1ME LINE L1 5531 5744 -377 328 239 101 37 chr11 99308585 99308694 -49474778 - L2 LINE L2 -9 3304 3189 230 118 0 0 chr11 99308805 99308839 -49474633 - MADE1 DNA Mariner -39 41 8 203 170 21 0 chr11 99309071 99309118 -49474354 + (TCTA)n Simple_repeat Simple_repeat 2 49 0 372 339 101 0 chr11 99309131 99309299 -49474173 - L3b LINE CR1 -138 1445 1261 1178 120 43 0 chr11 99311313 99311522 -49471950 - LTR54 LTR ERV1 0 510 293 2361 79 3 0 chr11 99311624 99311915 -49471557 - AluY SINE Alu -19 292 1 234 105 0 0 chr11 99311965 99312003 -49471469 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 291 247 65 0 chr11 99312324 99312401 -49471071 + MIR SINE MIR 68 149 -113 243 121 0 61 chr11 99313293 99313359 -49470113 + (GGA)n Simple_repeat Simple_repeat 3 64 0 815 151 68 21 chr11 99314432 99314720 -49468752 + MLT1B LTR MaLR 37 390 0 505 303 29 11 chr11 99314739 99314914 -49468558 + MER5B DNA MER1_type 1 178 0 228 227 188 62 chr11 99315783 99315911 -49467561 - MIR SINE MIR -108 154 11 501 182 0 0 chr11 99316655 99316754 -49466718 + (TG)n Simple_repeat Simple_repeat 2 100 0 410 340 73 29 chr11 99316754 99316960 -49466512 + MIR SINE MIR 9 223 -39 746 278 41 13 chr11 99317489 99317741 -49465731 + MIR SINE MIR 1 261 -1 215 256 182 41 chr11 99318521 99318642 -49464830 - MIR SINE MIR -6 256 119 327 287 11 0 chr11 99319111 99319198 -49464274 - MIR SINE MIR -127 135 48 1885 159 0 35 chr11 99322259 99322573 -49460899 - AluJb SINE Alu -9 303 1 282 252 56 14 chr11 99323027 99323170 -49460302 - MER103 DNA DNA -8 158 10 267 152 0 0 chr11 99323358 99323404 -49460068 - MER33 DNA MER1_type 0 363 318 1031 204 80 4 chr11 99323475 99323750 -49459722 - MER33 DNA MER1_type -28 296 1 318 298 171 6 chr11 99324320 99324478 -49458994 - MIR SINE MIR 0 262 79 375 248 116 31 chr11 99325150 99325279 -49458193 + MIR SINE MIR 13 152 -110 656 284 99 5 chr11 99325577 99325788 -49457684 + MIR SINE MIR 32 262 0 312 283 148 13 chr11 99325997 99326315 -49457157 - L1ME4a LINE L1 0 6121 5761 2181 119 3 3 chr11 99327139 99327450 -49456022 + AluSx SINE Alu 1 311 -1 201 230 40 95 chr11 99328909 99329035 -49454437 + MIR SINE MIR 73 191 -71 771 193 32 11 chr11 99330496 99330683 -49452789 - MER96B DNA MER1_type? -185 232 42 207 308 174 22 chr11 99331030 99331254 -49452218 - L2 LINE L2 -210 3062 2805 2110 116 0 3 chr11 99331659 99331969 -49451503 - L1PA15 LINE L1 -1 6164 5856 784 290 7 34 chr11 99332825 99333094 -49450378 + MIR SINE MIR 1 262 0 374 329 40 20 chr11 99333098 99333250 -49450222 - MER5A DNA MER1_type -23 166 12 332 317 61 48 chr11 99333280 99333510 -49449962 + MIR SINE MIR 16 248 -14 285 245 138 21 chr11 99333627 99333721 -49449751 - L3 LINE CR1 -3 1574 1470 426 299 42 65 chr11 99333768 99333985 -49449487 - L3 LINE CR1 -224 1353 1142 1632 25 5 0 chr11 99334876 99335078 -49448394 - L1P2 LINE L1 -573 5581 5379 2093 65 47 0 chr11 99335078 99335356 -49448116 + L1PA6 LINE L1 5860 6150 -4 306 288 76 17 chr11 99335498 99335616 -49447856 - MIR SINE MIR -50 212 88 29 0 0 0 chr11 99336053 99336082 -49447390 + AT_rich Low_complexity Low_complexity 1 29 0 6459 25 6 0 chr11 99336082 99336875 -49446597 - L1PA3 LINE L1 -3 6152 5355 712 214 69 103 chr11 99337375 99337725 -49445747 - MER46C DNA MER2_type 0 338 1 1900 117 25 23 chr11 99338048 99338381 -49445091 - THE1C LTR MaLR 0 375 1 2277 102 0 7 chr11 99339018 99339312 -49444160 - AluSg SINE Alu -18 292 1 371 294 52 33 chr11 99340481 99340811 -49442661 - L1ME4a LINE L1 -224 5897 5562 589 270 114 12 chr11 99340835 99341385 -49442087 + L1MD3 LINE L1 5265 5572 -598 279 0 0 0 chr11 99341413 99341444 -49442028 + (TA)n Simple_repeat Simple_repeat 2 32 0 454 350 71 44 chr11 99342344 99342778 -49440694 + L2 LINE L2 2827 3272 0 211 434 18 5 chr11 99342908 99343127 -49440345 - L3 LINE CR1 -775 802 581 195 305 64 85 chr11 99343965 99344247 -49439225 - L2 LINE L2 -37 3235 2960 22 0 0 0 chr11 99345317 99345339 -49438133 + AT_rich Low_complexity Low_complexity 1 22 0 240 100 0 0 chr11 99345545 99345585 -49437887 + (TG)n Simple_repeat Simple_repeat 2 41 0 300 289 30 44 chr11 99347114 99347249 -49436223 + L2 LINE L2 3136 3268 -4 195 362 67 36 chr11 99347698 99347922 -49435550 + L2 LINE L2 2351 2581 -733 1973 116 27 24 chr11 99348112 99348406 -49435066 - AluSx SINE Alu -17 295 1 434 110 27 0 chr11 99348408 99348481 -49434991 + CT-rich Low_complexity Low_complexity 3 77 0 1611 182 3 31 chr11 99348481 99348800 -49434672 - AluJb SINE Alu 0 312 3 2526 222 30 0 chr11 99348967 99349468 -49434004 + LTR53 LTR ERVL 4 519 0 2325 71 0 0 chr11 99349475 99349779 -49433693 + AluY SINE Alu 1 304 0 24 32 0 0 chr11 99350741 99350772 -49432700 + AT_rich Low_complexity Low_complexity 1 31 0 367 284 119 41 chr11 99351514 99351757 -49431715 - L1MC4a LINE L1 -1867 5941 5680 484 286 38 63 chr11 99351834 99352084 -49431388 - MIR SINE MIR -18 244 1 1208 83 0 0 chr11 99352817 99352973 -49430499 - AluSg/x SINE Alu 0 312 157 262 350 24 81 chr11 99353136 99353259 -49430213 - L2 LINE L2 -20 3252 3137 244 226 0 65 chr11 99353262 99353324 -49430148 + L2 LINE L2 3207 3264 -8 297 0 0 0 chr11 99355765 99355798 -49427674 + (T)n Simple_repeat Simple_repeat 1 33 0 203 270 101 22 chr11 99357041 99357130 -49426342 - MIR3 SINE MIR -16 192 97 616 245 64 72 chr11 99357132 99357381 -49426091 - MIR SINE MIR -15 247 1 338 235 15 0 chr11 99357460 99357528 -49425944 - MER5A DNA MER1_type -1 188 120 1350 234 93 11 chr11 99357528 99357895 -49425577 + MLT1E LTR MaLR 1 397 -196 661 122 99 0 chr11 99357995 99358126 -49425346 - LTR54 LTR ERV1 -366 144 1 380 230 20 10 chr11 99358571 99358671 -49424801 + L1MD3 LINE L1 7883 7983 -12 562 274 163 49 chr11 99359700 99360087 -49423385 + L3 LINE CR1 1131 1561 -16 230 167 0 0 chr11 99360146 99360182 -49423290 - L2 LINE L2 -13 3300 3265 377 313 69 6 chr11 99360574 99360734 -49422738 + MIR SINE MIR 1 170 -92 198 151 57 94 chr11 99360715 99360768 -49422704 + L2 LINE L2 3261 3311 -2 * 3863 221 64 36 chr11 99360879 99360953 -49422519 + L1ME1 LINE L1 4192 4262 -1904 13725 90 8 47 chr11 99360953 99363702 -49419770 + L1PA7 LINE L1 3426 6154 0 3863 221 64 36 chr11 99363702 99365533 -49417939 + L1ME1 LINE L1 4262 6165 -1 184 326 90 0 chr11 99366525 99366614 -49416858 - MIR SINE MIR -10 252 156 241 261 185 0 chr11 99366718 99366810 -49416662 + MIR SINE MIR 63 171 -91 203 360 90 0 chr11 99366988 99367077 -49416395 + L2 LINE L2 3134 3230 -42 3492 169 31 6 chr11 99367444 99368094 -49415378 + LTR51 LTR ERV1 6 671 0 229 145 0 56 chr11 99372127 99372181 -49411291 - L2 LINE L2 -218 3054 3008 248 213 0 4 chr11 99372265 99372320 -49411152 + MIR SINE MIR 62 115 -93 236 297 59 34 chr11 99372431 99372549 -49410923 + MIR SINE MIR 70 190 -72 312 83 0 0 chr11 99372840 99372888 -49410584 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 2259 48 4 0 chr11 99373438 99373707 -49409765 - AluY SINE Alu -41 270 1 182 0 105 0 chr11 99374549 99374587 -49408885 + T-rich Low_complexity Low_complexity 2 43 0 292 238 0 16 chr11 99375274 99375337 -49408135 - MER5A DNA MER1_type -97 92 31 899 233 33 14 chr11 99376828 99377043 -49406429 - MER20 DNA MER1_type 0 219 1 189 107 0 0 chr11 99377168 99377196 -49406276 + (TATATG)n Simple_repeat Simple_repeat 5 32 0 23 0 0 0 chr11 99377199 99377222 -49406250 + AT_rich Low_complexity Low_complexity 1 23 0 1055 195 116 8 chr11 99377225 99377476 -49405996 + MER39 LTR ERV1 371 648 -59 1476 199 43 7 chr11 99378064 99378346 -49405126 - AluJo SINE Alu -20 292 1 210 240 20 0 chr11 99379341 99379391 -49404081 - MIR SINE MIR -102 106 56 639 207 60 28 chr11 99379533 99379750 -49403722 + MLT1C LTR MaLR 1 224 -243 * 1348 244 46 18 chr11 99379745 99380228 -49403244 - MER39 LTR ERV1 -7 700 1 856 222 64 17 chr11 99380256 99380490 -49402982 + MLT1C LTR MaLR 219 463 -4 590 314 80 8 chr11 99381388 99381627 -49401845 + MIR SINE MIR 6 261 -1 334 298 58 33 chr11 99381930 99382051 -49401421 + MIR3 SINE MIR 32 155 -53 433 325 85 15 chr11 99383345 99383545 -49399927 + MIR SINE MIR 48 261 -1 348 305 32 0 chr11 99383657 99383752 -49399720 - L2 LINE L2 -25 3247 3150 925 208 29 0 chr11 99384898 99385071 -49398401 + MER45A DNA AcHobo 1 178 0 360 0 0 0 chr11 99385766 99385806 -49397666 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 311 267 11 67 chr11 99386126 99386216 -49397256 - L2 LINE L2 0 3272 3188 210 71 0 0 chr11 99386287 99386315 -49397157 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 5680 153 15 11 chr11 99387059 99388494 -49394978 + L1MA6 LINE L1 4842 6290 -10 305 305 12 0 chr11 99388807 99388889 -49394583 - L2 LINE L2 -4 3309 3227 1186 190 41 0 chr11 99389254 99389523 -49393949 + L1MA4 LINE L1 6013 6292 -8 1124 289 78 23 chr11 99390031 99390508 -49392964 + L2 LINE L2 2811 3313 0 330 253 84 59 chr11 99392217 99392419 -49391053 - Charlie8 DNA MER1_type -2184 233 27 * 991 249 122 67 chr11 99392417 99392983 -49390489 - MER115 DNA AcHobo -9 684 88 259 328 72 32 chr11 99393149 99393274 -49390198 + MIR SINE MIR 20 149 -113 261 303 62 96 chr11 99394662 99394840 -49388632 - MIR SINE MIR -71 191 20 510 265 43 38 chr11 99394896 99395081 -49388391 - MIR SINE MIR -51 211 26 23 0 0 0 chr11 99395793 99395816 -49387656 + AT_rich Low_complexity Low_complexity 1 23 0 405 0 0 0 chr11 99396445 99396490 -49386982 + (TG)n Simple_repeat Simple_repeat 2 46 0 180 0 0 0 chr11 99396848 99396868 -49386604 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 1212 109 11 0 chr11 99397847 99398022 -49385450 + AluSg/x SINE Alu 134 310 -2 406 191 29 0 chr11 99398713 99398818 -49384654 + CT-rich Low_complexity Low_complexity 2 109 0 2252 128 0 0 chr11 99398818 99399130 -49384342 - AluSq SINE Alu -1 312 1 2511 71 0 0 chr11 99399205 99399513 -49383959 + AluY SINE Alu 1 308 -3 609 279 88 17 chr11 99400874 99401114 -49382358 + MIR SINE MIR 5 261 -1 213 179 0 0 chr11 99401958 99401997 -49381475 + L2 LINE L2 3267 3305 -8 249 139 0 0 chr11 99403405 99403448 -49380024 + (TG)n Simple_repeat Simple_repeat 2 44 0 385 291 60 0 chr11 99403970 99404087 -49379385 - MIR SINE MIR -20 242 119 3302 189 66 44 chr11 99404144 99404388 -49379084 - L1MB8 LINE L1 0 6178 5941 1722 165 40 10 chr11 99404388 99404685 -49378787 - AluJo SINE Alu -6 306 1 3302 189 66 44 chr11 99404685 99405557 -49377915 - L1MB8 LINE L1 -237 5941 5040 360 0 0 0 chr11 99406260 99406300 -49377172 + (TG)n Simple_repeat Simple_repeat 2 41 0 2206 106 0 7 chr11 99406597 99406934 -49376538 - AluSx SINE Alu 0 312 1 275 275 34 11 chr11 99407398 99407489 -49375983 + MIR SINE MIR 51 151 -65 2705 151 40 55 chr11 99407499 99408022 -49375450 - MLT2B2 LTR ERVL 0 515 1 298 197 14 28 chr11 99408342 99408413 -49375059 - Charlie7 DNA MER1_type 0 2612 2543 28637 30 1 1 chr11 99408657 99413065 -49370407 + L1PA3 LINE L1 1749 6155 0 421 305 8 15 chr11 99413075 99413206 -49370266 - L2 LINE L2 0 3313 3184 205 289 40 111 chr11 99413739 99413964 -49369508 + L2 LINE L2 2955 3163 -109 737 248 68 15 chr11 99414138 99414344 -49369128 + MIR SINE MIR 2 218 -44 222 353 101 0 chr11 99415263 99415382 -49368090 + L2 LINE L2 3139 3269 -3 346 284 0 26 chr11 99415458 99415574 -49367898 - L1MC5 LINE L1 -44 7917 7805 210 235 49 37 chr11 99415894 99415975 -49367497 + MIR SINE MIR 109 190 -72 257 253 27 27 chr11 99417089 99417164 -49366308 - L2 LINE L2 -50 3222 3148 1809 204 25 47 chr11 99418452 99418923 -49364549 + MLT1C LTR MaLR 7 467 0 239 315 27 0 chr11 99419457 99419530 -49363942 + MIR SINE MIR 80 154 -108 392 341 11 86 chr11 99419767 99420034 -49363438 - MIR SINE MIR -2 260 14 346 250 40 10 chr11 99420563 99420663 -49362809 + MIR SINE MIR 89 191 -71 234 0 0 0 chr11 99422031 99422057 -49361415 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 2088 142 10 0 chr11 99422108 99422417 -49361055 - AluSx SINE Alu 0 312 1 1315 121 18 0 chr11 99422436 99422659 -49360813 - L1MA6 LINE L1 -2 6298 6072 188 183 0 17 chr11 99422899 99422959 -49360513 + GA-rich Low_complexity Low_complexity 2 60 0 276 337 71 0 chr11 99423407 99423505 -49359967 - MIR SINE MIR -90 172 68 214 290 0 18 chr11 99423702 99423758 -49359714 + MIR SINE MIR 99 152 -60 379 351 168 16 chr11 99424180 99424502 -49358970 + L3b LINE CR1 1111 1481 -102 250 283 0 0 chr11 99426717 99426777 -49356695 + (TA)n Simple_repeat Simple_repeat 2 61 0 4143 96 0 0 chr11 99426835 99427389 -49356083 - MER41A LTR ERV1 0 554 1 337 179 12 0 chr11 99427442 99427526 -49355946 - MER53 DNA DNA -104 85 1 308 272 22 33 chr11 99427531 99427623 -49355849 - MIR SINE MIR -84 178 88 219 261 104 35 chr11 99429030 99429145 -49354327 + MIR SINE MIR 81 203 -59 728 298 61 4 chr11 99430530 99430775 -49352697 - MIR SINE MIR -3 259 1 219 167 0 0 chr11 99430898 99430940 -49352532 + CT-rich Low_complexity Low_complexity 1 42 0 564 273 80 8 chr11 99431065 99431337 -49352135 + L1MC4 LINE L1 6441 6776 -1066 403 259 115 7 chr11 99431336 99431475 -49351997 + L1MC4 LINE L1 7547 7700 -342 * 313 222 0 12 chr11 99431500 99431581 -49351891 + L1MC4 LINE L1 7963 8042 0 22 0 0 0 chr11 99432135 99432157 -49351315 + AT_rich Low_complexity Low_complexity 1 22 0 422 285 48 12 chr11 99432338 99432503 -49350969 - L1ME LINE L1 -377 5744 5574 187 261 100 77 chr11 99432927 99433057 -49350415 - L3b LINE CR1 -260 1323 1191 284 296 13 50 chr11 99433898 99434057 -49349415 - MLT1J2 LTR MaLR 0 450 298 181 231 19 19 chr11 99434416 99434468 -49349004 + L2 LINE L2 3258 3309 -4 1025 167 96 12 chr11 99436946 99437186 -49346286 + L1MC2 LINE L1 6066 6325 -19 2331 116 0 0 chr11 99437324 99437627 -49345845 - AluSg SINE Alu -7 303 1 384 239 39 52 chr11 99437645 99437800 -49345672 + L1MC5 LINE L1 7543 7695 -266 3370 146 93 10 chr11 99437814 99438505 -49344967 - L1MB3 LINE L1 0 6183 5436 1915 149 10 0 chr11 99439170 99439471 -49344001 + AluSx SINE Alu 1 304 -8 406 322 25 0 chr11 99439585 99439703 -49343769 - L2 LINE L2 -5 3267 3147 315 0 0 0 chr11 99440005 99440040 -49343432 + (TG)n Simple_repeat Simple_repeat 2 36 0 325 319 110 6 chr11 99442316 99442479 -49340993 - MIR SINE MIR -74 188 9 300 91 0 0 chr11 99443203 99443247 -49340225 + (TA)n Simple_repeat Simple_repeat 2 45 0 1648 182 52 0 chr11 99443247 99443528 -49339944 - AluJo SINE Alu -13 299 1 432 225 48 45 chr11 99443548 99443695 -49339777 - MIR SINE MIR -11 197 45 544 302 59 27 chr11 99443737 99443959 -49339513 + MIR SINE MIR 28 256 -6 2392 108 38 22 chr11 99444157 99444526 -49338946 - THE1C LTR MaLR 0 375 1 754 285 125 59 chr11 99445588 99446231 -49337241 - L2 LINE L2 0 3313 2646 1365 151 22 120 chr11 99446295 99446619 -49336853 + AluYb8 SINE Alu 2 293 -25 552 316 61 13 chr11 99447028 99447095 -49336377 - MIR SINE MIR -11 251 189 2108 86 0 89 chr11 99447095 99447420 -49336052 - AluSq SINE Alu -17 296 1 552 316 61 13 chr11 99447420 99447592 -49335880 - MIR SINE MIR -73 189 4 397 295 100 17 chr11 99449829 99450042 -49333430 + MIR SINE MIR 8 241 -21 216 0 0 0 chr11 99450736 99450760 -49332712 + (T)n Simple_repeat Simple_repeat 1 24 0 225 0 0 0 chr11 99450955 99450980 -49332492 + (T)n Simple_repeat Simple_repeat 1 25 0 554 350 29 4 chr11 99451817 99452057 -49331415 - MIR SINE MIR -12 250 5 210 190 35 86 chr11 99452537 99452595 -49330877 - MIR SINE MIR -77 131 77 225 0 0 0 chr11 99453957 99453982 -49329490 + (TAA)n Simple_repeat Simple_repeat 2 26 0 346 320 166 29 chr11 99455809 99456087 -49327385 + L2 LINE L2 2996 3311 -2 1543 164 41 27 chr11 99456362 99456654 -49326818 - AluJo SINE Alu -15 297 2 1666 174 51 4 chr11 99456655 99456930 -49326542 - AluSx SINE Alu -24 288 1 506 259 11 76 chr11 99457145 99457330 -49326142 + MIR SINE MIR 89 261 -1 230 390 0 26 chr11 99457999 99458153 -49325319 - L2 LINE L2 -213 3059 2910 28 48 0 0 chr11 99458620 99458662 -49324810 + AT_rich Low_complexity Low_complexity 1 42 0 3857 207 56 13 chr11 99459012 99460464 -49323008 - L1MB8 LINE L1 -48 6130 4624 * 22978 82 8 5 chr11 99460452 99460464 -49323008 - L1P LINE L1 -3055 3091 3081 2380 91 0 19 chr11 99460464 99460783 -49322689 - AluSq SINE Alu 0 313 1 22978 82 8 5 chr11 99460783 99463849 -49319623 - L1P LINE L1 -3065 3081 2 5630 241 41 42 chr11 99463849 99465665 -49317807 - L1MB8 LINE L1 -1763 4383 2570 28 0 0 0 chr11 99465878 99465906 -49317566 + AT_rich Low_complexity Low_complexity 1 28 0 1282 204 60 76 chr11 99465982 99466350 -49317122 - MLT1A1 LTR MaLR 0 365 4 197 292 83 0 chr11 99467129 99467201 -49316271 - MER5A DNA MER1_type -77 112 35 * 228 276 66 13 chr11 99467147 99467223 -49316249 + MER5A DNA MER1_type 110 189 0 1407 134 19 0 chr11 99467321 99467530 -49315942 + AluSg/x SINE Alu 84 296 -16 218 321 0 0 chr11 99468470 99468523 -49314949 + L2 LINE L2 3134 3186 -86 2401 85 0 0 chr11 99468899 99469194 -49314278 + AluY SINE Alu 1 295 -16 275 359 99 56 chr11 99469215 99469627 -49313845 - L2 LINE L2 -12 3260 2831 1469 178 8 92 chr11 99469957 99470316 -49313156 - MLT1B LTR MaLR 0 390 62 27 0 0 0 chr11 99472800 99472827 -49310645 + AT_rich Low_complexity Low_complexity 1 27 0 231 301 95 43 chr11 99473135 99473365 -49310107 + MIR SINE MIR 1 238 -24 216 163 0 0 chr11 99474117 99474160 -49309312 + (CA)n Simple_repeat Simple_repeat 1 43 0 1598 164 53 27 chr11 99474648 99474947 -49308525 - AluJo SINE Alu -5 307 1 444 307 20 20 chr11 99475087 99475240 -49308232 - MER5A DNA MER1_type -5 184 32 651 331 139 30 chr11 99475264 99475952 -49307520 + L2 LINE L2 1796 2558 -756 224 252 142 55 chr11 99476026 99476153 -49307319 + L2 LINE L2 3175 3312 -1 2139 137 58 30 chr11 99476591 99476956 -49306516 + THE1C LTR MaLR 1 375 0 223 211 0 0 chr11 99479149 99479187 -49304285 - L2 LINE L2 -35 3237 3200 382 335 77 0 chr11 99479615 99479797 -49303675 - L3b LINE CR1 -254 1329 1134 1191 196 99 105 chr11 99479983 99480375 -49303097 + MLT1B LTR MaLR 1 390 0 23 0 0 0 chr11 99480799 99480822 -49302650 + AT_rich Low_complexity Low_complexity 1 23 0 1908 142 7 0 chr11 99481180 99481497 -49301975 - AluSx SINE Alu 0 320 2 189 220 0 102 chr11 99482275 99482334 -49301138 - L2 LINE L2 -6 3266 3214 216 111 0 0 chr11 99484709 99484745 -49298727 + (TC)n Simple_repeat Simple_repeat 1 36 0 283 310 55 71 chr11 99485459 99485714 -49297758 + MIR SINE MIR 9 259 -3 1680 154 45 0 chr11 99486163 99486429 -49297043 + AluJb SINE Alu 3 280 -32 1371 241 138 32 chr11 99486577 99487012 -49296460 - MLT1D LTR MaLR -4 501 21 186 291 51 13 chr11 99488141 99488220 -49295252 - MIR SINE MIR -21 241 160 274 345 26 0 chr11 99488663 99488776 -49294696 + MIR SINE MIR 34 149 -113 193 194 0 0 chr11 99489152 99489188 -49294284 + L2 LINE L2 3277 3312 -1 349 278 118 21 chr11 99491010 99491154 -49292318 + L2 LINE L2 3153 3310 -3 1613 290 77 6 chr11 99491255 99491759 -49291713 - MLT1H1 LTR MaLR -7 548 9 206 269 46 65 chr11 99491888 99491996 -49291476 - L2 LINE L2 -221 3051 2946 369 261 104 19 chr11 99493608 99493899 -49289573 + LTR16A LTR ERVL 12 368 -82 766 239 62 11 chr11 99495730 99495906 -49287566 + MER63A DNA MER1_type 1 185 -25 494 263 62 12 chr11 99495922 99496082 -49287390 + MIR SINE MIR 47 214 -48 230 269 129 0 chr11 99497257 99497350 -49286122 - MIR SINE MIR -59 203 99 22 0 0 0 chr11 99497566 99497588 -49285884 + AT_rich Low_complexity Low_complexity 1 22 0 2069 130 14 0 chr11 99498088 99498381 -49285091 + AluSx SINE Alu 4 300 -12 181 333 18 63 chr11 99498452 99498563 -49284909 + L2 LINE L2 3003 3108 -164 669 292 142 86 chr11 99499500 99500414 -49283058 + L2 LINE L2 2214 3180 -133 261 0 0 0 chr11 99500414 99500443 -49283029 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 669 292 142 86 chr11 99500443 99500583 -49282889 + L2 LINE L2 3180 3311 -2 221 302 32 0 chr11 99500615 99500678 -49282794 + MIR SINE MIR 79 143 -65 245 283 24 88 chr11 99502852 99503057 -49280415 + L3 LINE CR1 677 868 -709 1682 210 35 0 chr11 99503125 99503501 -49279971 - Charlie5 DNA MER1_type 0 2624 2236 443 246 74 16 chr11 99503511 99503633 -49279839 - MER3 DNA MER1_type -87 122 41 405 129 0 0 chr11 99504115 99504185 -49279287 + (CAT)n Simple_repeat Simple_repeat 3 72 0 250 345 72 29 chr11 99504354 99504493 -49278979 - MIR SINE MIR -98 164 20 183 179 18 71 chr11 99504755 99504811 -49278661 - MIR SINE MIR -109 153 101 22 0 0 0 chr11 99505385 99505407 -49278065 + AT_rich Low_complexity Low_complexity 1 22 0 225 336 134 65 chr11 99508667 99509232 -49274240 + L2 LINE L2 2257 2860 -454 776 180 8 0 chr11 99511095 99511217 -49272255 + FLAM_C SINE Alu 1 123 -10 2357 65 0 33 chr11 99511559 99511866 -49271606 - AluY SINE Alu -13 298 2 321 261 54 23 chr11 99512014 99512144 -49271328 - MLT1J2 LTR MaLR -233 217 84 228 167 21 0 chr11 99512187 99512235 -49271237 - MLT1J1 LTR MaLR -363 83 35 306 203 139 25 chr11 99512292 99512371 -49271101 + MIR3 SINE MIR 111 198 -10 557 315 45 21 chr11 99513714 99513942 -49269530 + MIR SINE MIR 19 250 -12 311 258 0 86 chr11 99513956 99514049 -49269423 + MIR3 SINE MIR 114 198 -10 493 318 40 6 chr11 99514892 99515068 -49268404 + MIR SINE MIR 11 192 -70 338 353 16 25 chr11 99515120 99515242 -49268230 + MIR SINE MIR 23 143 -119 324 279 73 59 chr11 99516093 99516240 -49267232 + L2 LINE L2 2710 2862 -452 1995 146 3 0 chr11 99516240 99516534 -49266938 - AluSx SINE Alu 0 312 18 324 279 73 59 chr11 99516534 99516605 -49266867 + L2 LINE L2 2862 2931 -383 181 261 22 0 chr11 99516655 99516701 -49266771 - L3 LINE CR1 -1235 342 296 * 429 336 80 37 chr11 99516675 99517002 -49266470 + L2 LINE L2 2955 3295 -18 189 0 0 0 chr11 99517009 99517030 -49266442 + (TGAA)n Simple_repeat Simple_repeat 2 22 0 2170 91 0 44 chr11 99517031 99517348 -49266124 + AluSq SINE Alu 1 304 0 586 293 157 41 chr11 99517844 99518257 -49265215 + L3 LINE CR1 1114 1574 -3 208 373 27 0 chr11 99518554 99518629 -49264843 - L2 LINE L2 0 3313 3237 2126 134 0 0 chr11 99519105 99519418 -49264054 + AluSx SINE Alu 1 313 0 24 0 0 0 chr11 99519706 99519730 -49263742 + AT_rich Low_complexity Low_complexity 1 24 0 1900 149 3 20 chr11 99519730 99520025 -49263447 - AluJo SINE Alu -22 290 1 300 375 136 11 chr11 99521457 99521641 -49261831 - MIR SINE MIR -23 239 33 283 248 60 64 chr11 99522252 99522410 -49261062 - MIR SINE MIR -69 139 6 889 217 63 31 chr11 99522718 99522915 -49260557 - MSTD LTR MaLR -12 353 131 2495 126 42 165 chr11 99522915 99523638 -49259834 - MER51A LTR ERV1 0 634 1 889 217 63 31 chr11 99523638 99523774 -49259698 - MSTD LTR MaLR -234 131 1 3509 195 51 14 chr11 99524032 99524493 -49258979 - L1PB4 LINE L1 -1 6155 5713 240 100 0 0 chr11 99524493 99524533 -49258939 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 3509 195 51 14 chr11 99524533 99524788 -49258684 - L1PB4 LINE L1 -443 5713 5469 2496 73 0 0 chr11 99524788 99525088 -49258384 + AluY SINE Alu 1 300 -11 3509 195 51 14 chr11 99525088 99525853 -49257619 - L1PB4 LINE L1 -687 5469 4628 372 344 73 29 chr11 99525901 99526122 -49257350 - MIR SINE MIR -17 245 16 729 290 92 74 chr11 99526288 99526723 -49256749 - L2 LINE L2 0 3313 2871 839 264 16 58 chr11 99527284 99527542 -49255930 + MIR SINE MIR 14 260 -2 222 182 0 0 chr11 99527677 99527721 -49255751 + MIR SINE MIR 98 141 -67 452 256 8 51 chr11 99527835 99527952 -49255520 + MER81 DNA DNA 1 112 -2 2185 110 23 0 chr11 99528015 99528315 -49255157 + AluSx SINE Alu 1 307 -5 41 58 0 0 chr11 99530783 99530852 -49252620 + AT_rich Low_complexity Low_complexity 1 69 0 297 260 13 52 chr11 99530853 99530930 -49252542 - L2 LINE L2 -1 3271 3198 188 303 106 0 chr11 99530973 99531039 -49252433 - L2 LINE L2 -75 3197 3125 208 300 71 0 chr11 99531268 99531338 -49252134 - MIR SINE MIR -124 138 64 25 0 0 0 chr11 99532344 99532369 -49251103 + AT_rich Low_complexity Low_complexity 1 25 0 470 281 96 0 chr11 99532415 99532582 -49250890 - MIR SINE MIR -33 229 47 1281 165 50 43 chr11 99533147 99533426 -49250046 + AluJo SINE Alu 1 281 -31 26 0 0 0 chr11 99533426 99533452 -49250020 + AT_rich Low_complexity Low_complexity 1 26 0 944 175 0 11 chr11 99533699 99533876 -49249596 + MER5B DNA MER1_type 1 175 -3 326 298 36 0 chr11 99533924 99534008 -49249464 - MER5A DNA MER1_type -94 95 9 245 326 61 20 chr11 99534085 99534183 -49249289 + MIR3 SINE MIR 90 191 -17 532 260 264 10 chr11 99534253 99534461 -49249011 - MIR SINE MIR 0 262 2 216 150 50 0 chr11 99534955 99534995 -49248477 + (CATG)n Simple_repeat Simple_repeat 3 44 0 445 296 9 0 chr11 99536422 99536530 -49246942 - MIR SINE MIR -67 141 33 1551 191 53 3 chr11 99536627 99536909 -49246563 - AluJo SINE Alu -16 296 1 186 267 208 40 chr11 99536917 99537018 -49246454 + MIR SINE MIR 48 165 -97 338 250 12 0 chr11 99537133 99537217 -49246255 + MIR SINE MIR 173 257 -5 309 325 75 8 chr11 99537532 99537652 -49245820 - L2 LINE L2 -5 3308 3181 249 225 25 25 chr11 99538673 99538753 -49244719 + T-rich Low_complexity Low_complexity 4 83 0 198 0 0 0 chr11 99539158 99539180 -49244292 + (TTCA)n Simple_repeat Simple_repeat 4 25 0 910 173 0 22 chr11 99539264 99539449 -49244023 - L1MB8 LINE L1 0 6178 5998 281 271 12 65 chr11 99540497 99540601 -49242871 - MER5A DNA MER1_type -66 123 14 867 160 32 14 chr11 99541160 99541374 -49242098 + L1MA7 LINE L1 6071 6295 -10 291 161 0 0 chr11 99543470 99543526 -49239946 + (CA)n Simple_repeat Simple_repeat 2 57 0 296 292 99 50 chr11 99543597 99543758 -49239714 + MIR SINE MIR 20 188 -74 998 194 35 17 chr11 99544394 99544425 -49239047 - MER46A DNA MER2_type -2495 236 207 1135 211 3 20 chr11 99544425 99544728 -49238744 + L1MA4 LINE L1 5999 6296 -4 998 194 35 17 chr11 99544728 99544928 -49238544 - MER46A DNA MER2_type -2524 207 1 305 235 59 73 chr11 99544937 99545073 -49238399 + MIR SINE MIR 129 262 0 188 233 23 0 chr11 99545228 99545271 -49238201 - L2 LINE L2 -38 3275 3232 435 285 97 52 chr11 99545446 99545776 -49237696 - L2 LINE L2 -405 2909 2565 203 125 25 0 chr11 99545996 99546036 -49237436 + CT-rich Low_complexity Low_complexity 2 42 0 495 318 85 18 chr11 99547214 99547437 -49236035 + MIR SINE MIR 21 258 -4 257 270 70 10 chr11 99547629 99547729 -49235743 + MIR SINE MIR 64 169 -93 296 310 24 11 chr11 99549158 99549248 -49234224 - MIR SINE MIR -59 149 58 1986 159 10 47 chr11 99549629 99550032 -49233440 + MLT1B LTR MaLR 1 388 -2 960 90 28 11 chr11 99550521 99550698 -49232774 + (TGG)n Simple_repeat Simple_repeat 1 180 0 841 85 40 23 chr11 99550714 99550891 -49232581 + (TGG)n Simple_repeat Simple_repeat 1 180 0 1117 161 5 64 chr11 99551030 99551248 -49232224 + AluSc SINE Alu 80 284 -25 2221 125 38 77 chr11 99551257 99551592 -49231880 + L1MA8 LINE L1 5813 6125 -166 2082 123 0 3 chr11 99551592 99551900 -49231572 - AluSx SINE Alu 0 307 1 2221 125 38 77 chr11 99551900 99552058 -49231414 + L1MA8 LINE L1 6125 6288 -3 228 374 68 14 chr11 99552060 99552207 -49231265 + L3 LINE CR1 1371 1525 -52 181 298 11 75 chr11 99552214 99552308 -49231164 + L2 LINE L2 3211 3298 -15 606 341 15 26 chr11 99552309 99552507 -49230965 - L2 LINE L2 0 3313 3117 1471 167 115 7 chr11 99552507 99552812 -49230660 - MER44D DNA MER2_type -1 608 1 606 341 15 26 chr11 99552812 99552883 -49230589 - L2 LINE L2 -196 3117 3047 214 268 36 116 chr11 99552962 99553074 -49230398 - L2 LINE L2 -44 3269 3167 225 0 0 0 chr11 99553397 99553422 -49230050 + (T)n Simple_repeat Simple_repeat 1 25 0 554 350 29 4 chr11 99554259 99554499 -49228973 - MIR SINE MIR -12 250 5 468 0 0 0 chr11 99556399 99556451 -49227021 + (TAA)n Simple_repeat Simple_repeat 2 53 0 365 314 202 21 chr11 99558270 99558557 -49224915 + L2 LINE L2 2973 3311 -2 1543 164 41 27 chr11 99558832 99559124 -49224348 - AluJo SINE Alu -15 297 2 1597 186 51 4 chr11 99559125 99559400 -49224072 - AluSx SINE Alu -24 288 1 506 259 11 76 chr11 99559615 99559800 -49223672 + MIR SINE MIR 89 261 -1 249 383 0 26 chr11 99560468 99560622 -49222850 - L2 LINE L2 -213 3059 2910 26 50 0 0 chr11 99561089 99561129 -49222343 + AT_rich Low_complexity Low_complexity 1 40 0 3441 208 53 13 chr11 99561479 99562931 -49220541 - L1MB8 LINE L1 -48 6130 4624 * 21567 82 8 5 chr11 99562919 99562931 -49220541 - L1P LINE L1 -3055 3091 3081 2385 91 0 19 chr11 99562931 99563250 -49220222 - AluSq SINE Alu 0 313 1 21567 82 8 5 chr11 99563250 99566319 -49217153 - L1P LINE L1 -3065 3081 2 4969 240 41 42 chr11 99566319 99568135 -49215337 - L1MB8 LINE L1 -1763 4383 2570 28 0 0 0 chr11 99568348 99568376 -49215096 + AT_rich Low_complexity Low_complexity 1 28 0 1087 225 42 69 chr11 99568460 99568820 -49214652 - MLT1A1 LTR MaLR -12 353 4 201 292 83 0 chr11 99569599 99569671 -49213801 - MER5A DNA MER1_type -77 112 35 * 233 276 66 13 chr11 99569617 99569693 -49213779 + MER5A DNA MER1_type 110 189 0 1435 130 19 0 chr11 99569790 99569997 -49213475 + AluSg/x SINE Alu 83 293 -19 217 321 0 0 chr11 99570912 99570965 -49212507 + L2 LINE L2 3134 3186 -86 2369 92 0 0 chr11 99571341 99571636 -49211836 + AluY SINE Alu 1 295 -16 310 358 102 53 chr11 99571657 99572087 -49211385 - L2 LINE L2 -12 3260 2810 1326 173 8 93 chr11 99572399 99572752 -49210720 - MLT1B LTR MaLR 0 390 68 27 0 0 0 chr11 99575237 99575264 -49208208 + AT_rich Low_complexity Low_complexity 1 27 0 236 294 95 43 chr11 99575572 99575802 -49207670 + MIR SINE MIR 1 238 -24 260 250 0 0 chr11 99576111 99576163 -49207309 - L3 LINE CR1 -253 1324 1273 590 192 60 13 chr11 99576302 99576572 -49206900 - MLT1H LTR MaLR -175 420 3 410 368 78 34 chr11 99576677 99577060 -49206412 - L3 LINE CR1 -421 1156 757 438 263 105 53 chr11 99577063 99577253 -49206219 - MIR SINE MIR 0 262 63 255 254 16 16 chr11 99577260 99577323 -49206149 - MIR SINE MIR -166 96 34 985 193 82 0 chr11 99577326 99577533 -49205939 + MER58A DNA MER1_type 1 224 0 345 322 47 46 chr11 99577575 99577811 -49205661 - MIR SINE MIR -10 252 11 246 364 59 23 chr11 99577829 99578049 -49205423 - L3 LINE CR1 -1293 284 57 406 291 33 3 chr11 99578228 99578417 -49205055 - MIR SINE MIR -22 240 2 1275 148 67 1 chr11 99578786 99578936 -49204536 + LTR54 LTR ERV1 4 143 -367 234 0 0 0 chr11 99578936 99578962 -49204510 + (GA)n Simple_repeat Simple_repeat 1 26 0 1275 148 67 1 chr11 99578962 99579222 -49204250 + LTR54 LTR ERV1 143 502 -8 394 212 8 91 chr11 99580037 99580169 -49203303 - MIR3 SINE MIR -1 207 87 345 131 0 0 chr11 99580262 99580323 -49203149 + (TG)n Simple_repeat Simple_repeat 2 62 0 213 171 13 40 chr11 99581098 99581174 -49202298 + GA-rich Low_complexity Low_complexity 2 75 0 2291 133 25 0 chr11 99581184 99581537 -49201935 + THE1B LTR MaLR 3 364 0 10928 100 32 8 chr11 99581538 99583080 -49200392 + THE1B-int LTR MaLR 2 1580 0 2084 152 28 6 chr11 99583080 99583436 -49200036 + THE1B LTR MaLR 1 364 0 294 200 31 0 chr11 99583728 99583793 -49199679 + L2 LINE L2 3247 3313 0 427 240 107 40 chr11 99584771 99584921 -49198551 + Charlie8 DNA MER1_type 2 161 -2256 2154 158 63 27 chr11 99585530 99585941 -49197531 - MSTC LTR MaLR -2 426 1 384 331 8 8 chr11 99585947 99586071 -49197401 - MER91A DNA MER1_type -54 142 19 232 335 149 21 chr11 99586114 99586302 -49197170 + L2 LINE L2 2552 2763 -551 312 264 47 0 chr11 99586401 99586507 -49196965 - MER103 DNA DNA -45 121 11 327 221 97 62 chr11 99586707 99586761 -49196711 - L2 LINE L2 -5 3267 3216 1788 179 88 0 chr11 99586761 99587125 -49196347 - MSTD LTR MaLR 0 396 1 327 221 97 62 chr11 99587125 99587183 -49196289 - L2 LINE L2 -56 3216 3151 251 340 57 19 chr11 99587463 99587569 -49195903 + L2 LINE L2 3151 3260 -12 1547 194 3 37 chr11 99588247 99588546 -49194926 + AluJo SINE Alu 1 289 -23 351 268 46 65 chr11 99590674 99590827 -49192645 - MIR SINE MIR -46 216 67 287 348 89 7 chr11 99591016 99591151 -49192321 - L2 LINE L2 -2 3270 3125 231 88 0 0 chr11 99592050 99592084 -49191388 + (CA)n Simple_repeat Simple_repeat 1 34 0 456 281 82 31 chr11 99593526 99593722 -49189750 + MIR SINE MIR 1 206 -56 227 330 19 29 chr11 99593722 99593825 -49189647 - L2 LINE L2 -6 3307 3206 405 0 0 0 chr11 99593994 99594039 -49189433 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 363 357 48 28 chr11 99594517 99594766 -49188706 + L2 LINE L2 2454 2707 -607 236 294 0 0 chr11 99595264 99595315 -49188157 + L2 LINE L2 3239 3289 -24 284 351 112 12 chr11 99595760 99596011 -49187461 + L2 LINE L2 2212 2487 -827 250 284 32 53 chr11 99596765 99596860 -49186612 + L2 LINE L2 3215 3307 -6 410 260 107 56 chr11 99596860 99597056 -49186416 - MIR SINE MIR -56 206 1 271 274 16 0 chr11 99597655 99597717 -49185755 - L2 LINE L2 -2 3270 3208 606 194 111 11 chr11 99598170 99598350 -49185122 - MER20 DNA MER1_type -5 214 17 22 66 0 16 chr11 99599224 99599252 -49184220 + AT_rich Low_complexity Low_complexity 1 28 -32 1691 165 21 7 chr11 99599252 99599537 -49183935 - AluJo SINE Alu -19 293 5 22 66 0 16 chr11 99599537 99599569 -49183903 + AT_rich Low_complexity Low_complexity 28 60 0 256 103 0 0 chr11 99599624 99599663 -49183809 - L1ME4a LINE L1 -81 6040 6002 22 35 0 0 chr11 99599750 99599779 -49183693 + AT_rich Low_complexity Low_complexity 1 29 0 2289 73 3 17 chr11 99599876 99600178 -49183294 + AluSg SINE Alu 1 298 -12 359 197 26 0 chr11 99600190 99600266 -49183206 + U13 snRNA snRNA 2 79 -25 967 243 105 70 chr11 99600576 99601062 -49182410 + MLT1D LTR MaLR 1 503 -2 247 167 0 0 chr11 99601303 99601345 -49182127 + MER66A LTR ERV1 296 337 -141 196 30 61 0 chr11 99601346 99601379 -49182093 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 26 50 0 0 chr11 99602063 99602103 -49181369 + AT_rich Low_complexity Low_complexity 1 40 0 278 304 20 39 chr11 99602210 99602312 -49181160 + L2 LINE L2 3134 3233 -39 466 233 0 0 chr11 99603468 99603597 -49179875 - L1MA4 LINE L1 -7 6293 6165 25 51 0 0 chr11 99603656 99603695 -49179777 + AT_rich Low_complexity Low_complexity 1 39 0 1147 251 73 46 chr11 99605119 99605601 -49177871 + MLT1H LTR MaLR 11 549 0 2283 108 73 14 chr11 99605681 99606025 -49177447 + THE1B LTR MaLR 1 364 0 11290 89 10 1 chr11 99606025 99607586 -49175886 + THE1B-int LTR MaLR 1 1575 -5 2016 148 72 17 chr11 99607590 99607935 -49175537 + THE1B LTR MaLR 1 364 0 613 167 14 35 chr11 99608168 99608312 -49175160 - L1MB8 LINE L1 -8 6170 6030 1255 96 82 19 chr11 99608460 99608668 -49174804 + L1PA11 LINE L1 5952 6172 -2 405 0 0 0 chr11 99609834 99609879 -49173593 + (CA)n Simple_repeat Simple_repeat 2 46 0 1814 164 20 18 chr11 99609880 99610221 -49173251 - MER2 DNA MER2_type -1 343 2 380 284 73 34 chr11 99610828 99611032 -49172440 - L2 LINE L2 -4 3309 3098 1537 209 42 17 chr11 99611032 99611439 -49172033 + LTR52 LTR ERVL 2 418 -3 497 249 30 35 chr11 99611486 99611655 -49171817 - MLT1H LTR MaLR -336 213 3 507 299 45 31 chr11 99612460 99612684 -49170788 - MIR SINE MIR -26 236 10 185 365 52 0 chr11 99613745 99613841 -49169631 + L2 LINE L2 2953 3053 -219 217 294 0 0 chr11 99614008 99614059 -49169413 + (TG)n Simple_repeat Simple_repeat 1 51 0 24 38 0 38 chr11 99614124 99614159 -49169313 + AT_rich Low_complexity Low_complexity 1 35 -16 2259 98 0 13 chr11 99614159 99614474 -49168998 - AluY SINE Alu 0 311 1 24 38 0 38 chr11 99614474 99614491 -49168981 + AT_rich Low_complexity Low_complexity 35 51 0 258 32 0 0 chr11 99614731 99614762 -49168710 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 187 345 18 0 chr11 99614765 99614820 -49168652 - L2 LINE L2 -15 3257 3202 248 170 0 38 chr11 99617624 99617677 -49165795 + MIR3 SINE MIR 157 207 -1 555 263 56 94 chr11 99618262 99618601 -49164871 + L1ME4a LINE L1 5787 6112 -9 291 273 15 0 chr11 99619979 99620045 -49163427 - L2 LINE L2 -5 3308 3242 218 310 0 23 chr11 99620819 99620906 -49162566 - MIR SINE MIR -3 259 175 520 213 194 6 chr11 99621030 99621190 -49162282 - MIR SINE MIR -1 261 72 253 340 144 16 chr11 99673396 99673584 -49109888 - L2 LINE L2 -551 2763 2552 269 336 69 0 chr11 99673627 99673743 -49109729 + MER91A DNA MER1_type 19 142 -54 2364 156 63 27 chr11 99673749 99674160 -49109312 + MSTC LTR MaLR 1 426 -2 485 240 107 40 chr11 99674769 99674919 -49108553 - Charlie8 DNA MER1_type -2256 161 2 291 200 31 0 chr11 99675898 99675963 -49107509 - L2 LINE L2 0 3313 3247 2214 152 31 6 chr11 99676255 99676610 -49106862 - THE1B LTR MaLR 0 364 1 11601 98 34 10 chr11 99676610 99678151 -49105321 - THE1B-int LTR MaLR 0 1580 2 2483 130 25 0 chr11 99678152 99678505 -49104967 - THE1B LTR MaLR 0 364 3 213 171 13 40 chr11 99678515 99678591 -49104881 + CT-rich Low_complexity Low_complexity 2 75 0 345 131 0 0 chr11 99679366 99679427 -49104045 + (CA)n Simple_repeat Simple_repeat 2 62 0 384 212 8 91 chr11 99679520 99679652 -49103820 + MIR3 SINE MIR 87 207 -1 1386 148 73 11 chr11 99680467 99680727 -49102745 - LTR54 LTR ERV1 -8 502 260 216 0 0 0 chr11 99680727 99680751 -49102721 + (TC)n Simple_repeat Simple_repeat 1 24 0 1386 148 73 11 chr11 99680751 99680901 -49102571 - LTR54 LTR ERV1 -250 260 4 403 291 33 3 chr11 99681270 99681459 -49102013 + MIR SINE MIR 2 240 -22 241 364 59 23 chr11 99681638 99681858 -49101614 + L3 LINE CR1 57 284 -1293 346 317 49 48 chr11 99681876 99682112 -49101360 + MIR SINE MIR 11 252 -10 1076 193 82 0 chr11 99682154 99682361 -49101111 - MER58A DNA MER1_type 0 224 1 234 270 16 16 chr11 99682364 99682427 -49101045 + MIR SINE MIR 34 96 -166 418 265 106 53 chr11 99682435 99682624 -49100848 + MIR SINE MIR 64 262 0 385 350 89 44 chr11 99682627 99683010 -49100462 + L3 LINE CR1 757 1156 -421 605 213 63 15 chr11 99683115 99683318 -49100154 + MLT1H LTR MaLR 3 208 -341 342 137 74 0 chr11 99683315 99683384 -49100088 + MLT1G3 LTR MaLR 249 420 -175 * 298 250 0 141 chr11 99683523 99683651 -49099821 + L3 LINE CR1 1273 1382 -195 1075 143 21 0 chr11 99683656 99683845 -49099627 + L1MA8 LINE L1 5494 5686 -626 2099 119 113 3 chr11 99683845 99683862 -49099610 + L1PB1 LINE L1 5764 5778 -373 324 0 0 0 chr11 99683862 99683898 -49099574 + (TG)n Simple_repeat Simple_repeat 2 37 0 * 459 0 0 0 chr11 99683897 99683948 -49099524 + (TA)n Simple_repeat Simple_repeat 2 52 0 2099 119 113 3 chr11 99683898 99684274 -49099198 + L1PB1 LINE L1 5778 6145 -6 24 0 0 0 chr11 99684280 99684304 -49099168 + AT_rich Low_complexity Low_complexity 1 24 0 3108 133 39 77 chr11 99684332 99684482 -49098990 + L1MA8 LINE L1 5675 5829 -462 2551 60 0 10 chr11 99684482 99684796 -49098676 + AluY SINE Alu 1 311 0 1483 133 0 48 chr11 99684802 99685050 -49098422 + AluSc SINE Alu 73 308 -1 3108 133 39 77 chr11 99685050 99685370 -49098102 + L1MA8 LINE L1 5834 6126 -165 2078 123 0 3 chr11 99685370 99685682 -49097790 - AluSx SINE Alu 0 311 1 3108 133 39 77 chr11 99685682 99685840 -49097632 + L1MA8 LINE L1 6126 6288 -3 220 374 68 14 chr11 99685842 99685989 -49097483 + L3 LINE CR1 1371 1525 -52 575 341 15 26 chr11 99686091 99686289 -49097183 - L2 LINE L2 0 3313 3117 1648 164 115 7 chr11 99686289 99686594 -49096878 - MER44D DNA MER2_type -1 608 1 575 341 15 26 chr11 99686594 99686665 -49096807 - L2 LINE L2 -196 3117 3047 208 274 19 123 chr11 99686744 99686850 -49096622 - L2 LINE L2 -44 3269 3175 2509 81 3 0 chr11 99687075 99687384 -49096088 - AluSp SINE Alu -3 310 1 283 297 54 0 chr11 99687928 99688002 -49095470 - L2 LINE L2 -74 3198 3121 501 313 132 54 chr11 99688326 99689384 -49094088 - L2 LINE L2 -49 3223 2074 332 311 115 43 chr11 99689409 99689782 -49093690 - L2 LINE L2 -2 3311 2912 304 245 122 87 chr11 99690749 99690945 -49092527 + MIR SINE MIR 60 262 0 2135 188 37 0 chr11 99691249 99691601 -49091871 - MLT1A1 LTR MaLR 0 365 1 783 238 130 48 chr11 99691601 99691870 -49091602 - MLT1A2 LTR MaLR -81 293 3 2296 90 0 3 chr11 99693043 99693331 -49090141 + AluSx SINE Alu 8 294 -18 1214 221 154 42 chr11 99693612 99694020 -49089452 + LTR16A1 LTR ERVL 4 457 0 24 0 0 0 chr11 99694183 99694207 -49089265 + AT_rich Low_complexity Low_complexity 1 24 0 180 111 0 0 chr11 99694580 99694607 -49088865 + (CA)n Simple_repeat Simple_repeat 1 27 0 200 182 0 0 chr11 99695307 99695340 -49088132 + GA-rich Low_complexity Low_complexity 4 36 0 205 269 0 0 chr11 99695589 99695641 -49087831 + T-rich Low_complexity Low_complexity 2 53 0 2305 99 0 10 chr11 99697127 99697429 -49086043 + AluSx SINE Alu 1 299 -13 219 114 0 0 chr11 99701839 99701874 -49081598 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 368 278 102 0 chr11 99704739 99704847 -49078625 - MIR3 SINE MIR -87 121 3 194 200 0 0 chr11 99704931 99704966 -49078506 - MER5B DNA MER1_type -142 36 2 385 254 0 27 chr11 99705540 99705650 -49077822 - MIR3 SINE MIR -6 202 96 185 229 0 0 chr11 99705935 99705970 -49077502 - MER5B DNA MER1_type -137 41 7 347 143 0 0 chr11 99705970 99706026 -49077446 - MER94 DNA DNA -78 56 1 192 365 0 0 chr11 99706579 99706642 -49076830 - L2 LINE L2 -3 3310 3248 540 359 59 13 chr11 99707789 99708026 -49075446 + MIR SINE MIR 12 259 -3 608 265 124 27 chr11 99709439 99709696 -49073776 + L1MC4 LINE L1 6767 7048 -994 180 298 0 0 chr11 99709730 99709777 -49073695 - MIR SINE MIR -65 197 151 2042 201 147 80 chr11 99709777 99710313 -49073159 + MLT1E2 LTR MaLR 1 589 -35 1928 166 0 16 chr11 99710313 99710627 -49072845 - AluJb SINE Alu -3 309 1 2042 201 147 80 chr11 99710627 99710662 -49072810 + MLT1E2 LTR MaLR 589 620 -4 318 197 0 0 chr11 99710663 99710724 -49072748 - MIR SINE MIR -104 158 98 22 0 0 0 chr11 99711102 99711124 -49072348 + AT_rich Low_complexity Low_complexity 1 22 0 1966 97 67 30 chr11 99711145 99711445 -49072027 - AluSx SINE Alu -1 311 1 252 288 38 0 chr11 99711497 99711577 -49071895 - MIR SINE MIR -102 160 78 294 342 71 29 chr11 99711683 99711923 -49071549 + MIR SINE MIR 7 256 -6 1250 203 146 35 chr11 99712109 99712227 -49071245 + AluJo SINE Alu 1 105 -197 189 0 0 0 chr11 99712227 99712248 -49071224 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1250 203 146 35 chr11 99712248 99712390 -49071082 + AluJo SINE Alu 105 290 -12 1306 175 171 4 chr11 99712396 99712642 -49070830 + AluJb SINE Alu 1 287 -15 29 0 0 0 chr11 99712643 99712672 -49070800 + AT_rich Low_complexity Low_complexity 1 29 0 2299 113 0 0 chr11 99713160 99713462 -49070010 + AluSg SINE Alu 2 303 -7 27 0 0 0 chr11 99713574 99713601 -49069871 + AT_rich Low_complexity Low_complexity 1 27 0 1489 174 82 0 chr11 99713611 99713881 -49069591 + AluJo SINE Alu 6 297 -15 795 309 103 23 chr11 99715356 99716213 -49067259 + L1ME4a LINE L1 4025 4949 -1197 1575 241 44 36 chr11 99716469 99716993 -49066479 + L1ME4a LINE L1 5276 5803 -2005 1261 167 19 0 chr11 99717030 99717240 -49066232 - MER20 DNA MER1_type 0 219 6 321 280 37 9 chr11 99717797 99717904 -49065568 + L1ME4a LINE L1 5988 6097 -24 1102 242 9 55 chr11 99718818 99719148 -49064324 + MER46C DNA MER2_type 2 316 -22 228 154 46 62 chr11 99719762 99719827 -49063645 + L1MC4a LINE L1 6277 6340 -1468 237 222 30 10 chr11 99719960 99720059 -49063413 + (TAA)n Simple_repeat Simple_repeat 3 103 0 3151 196 60 115 chr11 99720152 99721610 -49061862 + L1MC5 LINE L1 6500 7885 -76 465 248 86 0 chr11 99723485 99723602 -49059870 - L2 LINE L2 0 3313 3187 207 0 0 0 chr11 99724233 99724256 -49059216 + (A)n Simple_repeat Simple_repeat 1 23 0 1278 241 75 24 chr11 99724256 99724720 -49058752 + HAL1 LINE L1 1032 1519 -988 1435 254 152 25 chr11 99724731 99725423 -49058049 + HAL1 LINE L1 1580 2359 -148 299 224 129 60 chr11 99725432 99725548 -49057924 + HAL1 LINE L1 2383 2506 -1 370 262 37 9 chr11 99726634 99726741 -49056731 + L1ME4a LINE L1 5988 6097 -24 1102 242 9 55 chr11 99727655 99727985 -49055487 + MER46C DNA MER2_type 2 316 -22 418 270 24 16 chr11 99729158 99729284 -49054188 - MIR SINE MIR -116 146 20 358 250 9 28 chr11 99729698 99729806 -49053666 - L2 LINE L2 -307 2965 2860 194 311 23 83 chr11 99729836 99729968 -49053504 - L2 LINE L2 -564 2750 2627 226 321 101 59 chr11 99730321 99730816 -49052656 - L2 LINE L2 -1002 2312 1797 216 182 0 0 chr11 99731924 99731968 -49051504 + (TG)n Simple_repeat Simple_repeat 2 45 0 186 43 0 0 chr11 99734682 99734705 -49048767 + (TTG)n Simple_repeat Simple_repeat 2 24 0 202 231 0 0 chr11 99735122 99735161 -49048311 - L2 LINE L2 -8 3305 3267 2286 107 0 3 chr11 99738008 99738306 -49045166 - AluSg SINE Alu -13 297 1 438 254 54 8 chr11 99739464 99739594 -49043878 - MIR3 SINE MIR -23 185 50 189 0 0 0 chr11 99741515 99741536 -49041936 + (CA)n Simple_repeat Simple_repeat 2 22 0 315 193 0 0 chr11 99741901 99741989 -49041483 + A-rich Low_complexity Low_complexity 1 88 0 198 0 0 0 chr11 99742511 99742533 -49040939 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 2472 151 30 37 chr11 99742677 99743114 -49040358 + Tigger2a DNA MER2_type 1 434 0 664 246 48 11 chr11 99743453 99743640 -49039832 + MER63A DNA MER1_type 13 206 -4 1948 155 7 13 chr11 99744029 99744338 -49039134 + AluJo SINE Alu 1 307 -5 3130 164 34 34 chr11 99744483 99744771 -49038701 - MER68 LTR ERV1 0 562 272 2290 123 0 0 chr11 99744771 99745080 -49038392 + AluSx SINE Alu 1 309 -3 3130 164 34 34 chr11 99745080 99745353 -49038119 - MER68 LTR ERV1 -289 273 1 628 230 62 6 chr11 99745969 99746130 -49037342 + MLT1A1 LTR MaLR 196 365 0 30 0 0 0 chr11 99746159 99746189 -49037283 + AT_rich Low_complexity Low_complexity 1 30 0 545 303 113 12 chr11 99746209 99746529 -49036943 - L1MC4a LINE L1 -1889 5919 5568 503 250 236 0 chr11 99747142 99747290 -49036182 + MER5A DNA MER1_type 7 189 0 313 277 226 0 chr11 99747315 99747452 -49036020 + MIR SINE MIR 71 238 -24 21 0 0 0 chr11 99747579 99747600 -49035872 + AT_rich Low_complexity Low_complexity 1 21 0 1988 216 40 26 chr11 99748982 99749435 -49034037 + MLT1C LTR MaLR 1 459 -8 2487 66 0 10 chr11 99749473 99749778 -49033694 - AluY SINE Alu -9 302 1 238 260 39 52 chr11 99749891 99749968 -49033504 + MIR SINE MIR 156 231 -31 1532 174 33 4 chr11 99750047 99750322 -49033150 - MSTB1 LTR MaLR -4 428 146 1493 196 119 31 chr11 99750973 99751412 -49032060 - MLT2D LTR ERVL 0 464 1 2439 125 45 67 chr11 99751483 99751932 -49031540 - Tigger2 DNA MER2_type 0 2718 2280 324 206 15 0 chr11 99751930 99751998 -49031474 - Tigger2 DNA MER2_type -2649 69 1 * 568 317 72 22 chr11 99752185 99752504 -49030968 - L1MC4a LINE L1 -1900 5908 5574 343 256 103 8 chr11 99752715 99752832 -49030640 + L2 LINE L2 3186 3313 0 1855 135 14 20 chr11 99754372 99754668 -49028804 + AluSg SINE Alu 1 294 -16 809 176 0 15 chr11 99756589 99756720 -49026752 + FLAM_C SINE Alu 1 129 -4 25 31 0 0 chr11 99756721 99756753 -49026719 + AT_rich Low_complexity Low_complexity 1 32 0 822 223 83 25 chr11 99757822 99758064 -49025408 + L2 LINE L2 2399 2654 -660 189 271 104 0 chr11 99758169 99758217 -49025255 + L2 LINE L2 3258 3310 -3 1404 186 51 51 chr11 99759698 99760010 -49023462 - AluJb SINE Alu 0 312 1 182 235 0 0 chr11 99761780 99761814 -49021658 + MIR SINE MIR 42 75 -187 184 348 67 11 chr11 99762195 99762284 -49021188 - L2 LINE L2 -40 3273 3180 437 174 87 0 chr11 99762644 99762737 -49020735 - AluJb SINE Alu 0 306 208 1494 162 106 50 chr11 99763213 99763534 -49019938 + MER44D DNA MER2_type 1 609 0 360 288 225 5 chr11 99763605 99763796 -49019676 + MIR SINE MIR 30 262 0 203 346 19 77 chr11 99763869 99763973 -49019499 - MIR3 SINE MIR -97 111 14 198 286 229 19 chr11 99765191 99765296 -49018176 - L2 LINE L2 -5 3267 3141 190 214 24 0 chr11 99765547 99765589 -49017883 - L2 LINE L2 -2 3270 3228 22 0 0 0 chr11 99765683 99765705 -49017767 + AT_rich Low_complexity Low_complexity 1 22 0 237 238 32 16 chr11 99765796 99765859 -49017613 - MIR3 SINE MIR -37 171 108 2095 142 8 23 chr11 99766545 99766725 -49016747 - MER47A DNA MER2_type -1957 366 192 2481 118 19 16 chr11 99766725 99767099 -49016373 + THE1C LTR MaLR 1 375 0 2095 142 8 23 chr11 99767099 99767270 -49016202 - MER47A DNA MER2_type -2131 192 20 1304 116 0 16 chr11 99769124 99769313 -49014159 + AluSc SINE Alu 119 304 -5 2377 155 67 12 chr11 99769750 99770156 -49013316 + MSTA LTR MaLR 1 428 0 9976 133 23 39 chr11 99770158 99771762 -49011710 + MSTA-int LTR MaLR 3 1580 0 2362 137 117 8 chr11 99771762 99772148 -49011324 + MSTA LTR MaLR 1 428 0 365 303 0 53 chr11 99772231 99772383 -49011089 - MIR SINE MIR -9 253 110 1521 184 0 28 chr11 99772772 99773054 -49010418 + AluJo SINE Alu 19 292 -20 276 284 182 71 chr11 99773157 99773247 -49010225 + MIR SINE MIR 12 91 -171 267 31 0 0 chr11 99773247 99773279 -49010193 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 1876 121 22 63 chr11 99773282 99773597 -49009875 - AluSx SINE Alu -10 302 1 276 284 182 71 chr11 99773597 99773727 -49009745 + MIR SINE MIR 92 261 -1 275 256 0 13 chr11 99773869 99773947 -49009525 + MIR SINE MIR 185 261 -1 967 126 0 0 chr11 99774384 99774511 -49008961 + FLAM_C SINE Alu 1 127 -6 27 49 0 0 chr11 99774537 99774578 -49008894 + AT_rich Low_complexity Low_complexity 1 41 0 1440 192 45 7 chr11 99774592 99774878 -49008594 + MER58B DNA MER1_type 1 297 -44 233 375 15 22 chr11 99775020 99775156 -49008316 - MIR3 SINE MIR -52 156 22 4101 149 21 40 chr11 99775273 99775350 -49008122 - MER50 LTR ERV1 -23 711 634 2561 49 7 7 chr11 99775350 99775656 -49007816 + AluY SINE Alu 1 306 -5 4101 149 21 40 chr11 99775656 99776303 -49007169 - MER50 LTR ERV1 -100 634 1 309 139 26 183 chr11 99777769 99777884 -49005588 + MIR SINE MIR 34 130 -132 584 199 92 0 chr11 99777933 99778074 -49005398 + MIR SINE MIR 109 262 0 1425 319 106 17 chr11 99778319 99778906 -49004566 - MER115 DNA AcHobo -47 646 8 478 313 149 34 chr11 99778912 99779286 -49004186 - L2 LINE L2 -19 3294 2964 2270 70 3 7 chr11 99779286 99779584 -49003888 + AluY SINE Alu 1 297 -14 478 313 149 34 chr11 99779584 99779980 -49003492 - L2 LINE L2 -349 2964 2430 506 261 160 21 chr11 99780213 99780570 -49002902 + L2 LINE L2 2593 3006 -307 413 300 17 8 chr11 99780590 99780710 -49002762 + L2 LINE L2 3188 3308 -5 2499 135 97 66 chr11 99780741 99781258 -49002214 + LTR64 LTR ERVK 1 533 -25 2309 100 7 0 chr11 99781259 99781558 -49001914 + AluSx SINE Alu 2 302 -10 2516 62 0 3 chr11 99781558 99781864 -49001608 + AluY SINE Alu 1 305 -6 1871 246 24 5 chr11 99781884 99782307 -49001165 + LTR31 LTR ERV1 189 619 0 488 319 128 20 chr11 99782307 99782705 -49000767 - L2 LINE L2 -1558 1756 1316 532 292 132 67 chr11 99783949 99784291 -48999181 + L2 LINE L2 2909 3272 0 293 304 0 0 chr11 99784562 99784641 -48998831 - MIR SINE MIR -7 255 177 221 298 95 0 chr11 99787239 99787323 -48996149 - L2 LINE L2 -2 3270 3179 2042 142 10 0 chr11 99787575 99787870 -48995602 + AluSx SINE Alu 1 298 -14 1154 123 4 138 chr11 99795515 99795768 -48987704 - MER20 DNA MER1_type 0 219 1 479 286 22 51 chr11 99796032 99796210 -48987262 + L2 LINE L2 3140 3312 -1 282 341 30 43 chr11 99797570 99797734 -48985738 - MIR3 SINE MIR -31 177 16 258 327 38 38 chr11 99797871 99798030 -48985442 + MER117 DNA MER1_type 6 164 -33 360 268 61 0 chr11 99798033 99798115 -48985357 + L2 LINE L2 3225 3311 -2 3512 178 94 20 chr11 99798566 99799297 -48984175 - LTR48 LTR ERV1 0 787 3 205 342 62 68 chr11 99800035 99800196 -48983276 - L2 LINE L2 -2 3270 3111 181 265 132 15 chr11 99800469 99800537 -48982935 - L2 LINE L2 -556 2758 2683 2336 84 3 3 chr11 99800590 99800887 -48982585 + AluY SINE Alu 1 297 -14 511 259 166 41 chr11 99800963 99801283 -48982189 - L2 LINE L2 -525 2789 2430 506 261 160 21 chr11 99801516 99801873 -48981599 + L2 LINE L2 2593 3006 -307 413 300 17 8 chr11 99801893 99802013 -48981459 + L2 LINE L2 3188 3308 -5 2499 135 97 66 chr11 99802044 99802561 -48980911 + LTR64 LTR ERVK 1 533 -25 2309 100 7 0 chr11 99802562 99802861 -48980611 + AluSx SINE Alu 2 302 -10 2516 62 0 3 chr11 99802861 99803167 -48980305 + AluY SINE Alu 1 305 -6 1871 246 24 5 chr11 99803187 99803610 -48979862 + LTR31 LTR ERV1 189 619 0 488 319 128 20 chr11 99803610 99804008 -48979464 - L2 LINE L2 -1558 1756 1316 383 274 20 98 chr11 99804549 99804753 -48978719 + MER21B LTR ERV1 1 188 -675 1962 109 0 4 chr11 99807762 99808027 -48975445 + AluSg SINE Alu 41 304 -6 383 259 114 70 chr11 99808040 99808246 -48975226 + MER102b DNA MER1_type 77 295 -1133 2964 92 0 18 chr11 99808246 99808628 -48974844 + THE1C LTR MaLR 1 375 0 383 259 114 70 chr11 99808628 99808649 -48974823 + MER102b DNA MER1_type 295 314 -27 1974 182 107 21 chr11 99808692 99809160 -48974312 - L1MD2 LINE L1 -10 6349 5842 1722 180 78 20 chr11 99809286 99809631 -48973841 + MLT1A1 LTR MaLR 1 365 0 1745 89 0 0 chr11 99810084 99810298 -48973174 + L1PA8 LINE L1 5946 6159 -13 2274 87 3 0 chr11 99810714 99811003 -48972469 + AluY SINE Alu 1 290 -21 215 289 39 0 chr11 99811284 99811336 -48972136 - L2 LINE L2 -90 3182 3129 267 257 225 28 chr11 99811653 99811937 -48971535 - MLT1J2 LTR MaLR -44 406 67 2337 112 0 0 chr11 99812115 99812427 -48971045 + AluSx SINE Alu 1 312 0 310 221 50 100 chr11 99814078 99814218 -48969254 + MIR SINE MIR 85 217 -45 503 237 92 13 chr11 99814427 99814579 -48968893 - MIR SINE MIR -37 225 62 330 200 71 0 chr11 99814657 99814727 -48968745 + MER5A DNA MER1_type 1 75 -114 968 191 11 16 chr11 99814743 99814932 -48968540 - MER5A DNA MER1_type 0 189 2 1259 233 111 8 chr11 99814937 99815332 -48968140 - Charlie4a DNA MER1_type -1 507 72 1648 209 126 60 chr11 99815347 99815530 -48967942 + MLT1F1 LTR MaLR 1 171 -396 1586 173 52 46 chr11 99815530 99815918 -48967554 - MLT1B LTR MaLR 0 390 1 1648 209 126 60 chr11 99815918 99816257 -48967215 + MLT1F1 LTR MaLR 171 567 0 272 175 105 0 chr11 99816617 99816674 -48966798 - MIR SINE MIR -84 124 62 206 242 65 128 chr11 99817327 99817467 -48966005 - MER5A DNA MER1_type -22 167 25 191 288 22 115 chr11 99818316 99818455 -48965017 + L2 LINE L2 2934 3059 -213 208 188 83 0 chr11 99818550 99818598 -48964874 + L2 LINE L2 3221 3272 0 548 277 60 6 chr11 99818857 99819023 -48964449 + MER45A DNA AcHobo 3 177 -1 2318 92 0 0 chr11 99819498 99819804 -48963668 + AluSx SINE Alu 1 306 0 313 292 66 90 chr11 99820199 99820487 -48962985 - L1MC4a LINE L1 -1872 5936 5656 285 353 137 27 chr11 99820676 99821078 -48962394 - L2 LINE L2 -16 3256 2811 361 279 38 38 chr11 99821879 99822037 -48961435 + L1ME2 LINE L1 5998 6155 -9 300 260 21 10 chr11 99822878 99822974 -48960498 - MIR SINE MIR -80 128 32 222 310 60 10 chr11 99823068 99823168 -48960304 - L3b LINE CR1 -102 1481 1377 1671 241 28 86 chr11 99825879 99826563 -48956909 + L2 LINE L2 2120 2763 -551 214 287 122 9 chr11 99826574 99826689 -48956783 + L2 LINE L2 3186 3313 0 1469 204 3 17 chr11 99827477 99827766 -48955706 + AluJo SINE Alu 6 290 -22 298 283 19 19 chr11 99828886 99828992 -48954480 - MIR SINE MIR -136 126 21 1253 157 13 0 chr11 99830873 99831102 -48952370 + L1MA7 LINE L1 6056 6287 -4 207 320 29 0 chr11 99832216 99832319 -48951153 + L3b LINE CR1 1295 1400 -183 1041 170 36 0 chr11 99832752 99832946 -48950526 + MER20 DNA MER1_type 5 205 -14 183 42 0 0 chr11 99835874 99835898 -48947574 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 785 275 28 0 chr11 99837367 99837585 -48945887 + MER58A DNA MER1_type 1 224 0 1794 167 0 31 chr11 99837988 99838306 -48945166 + AluJo SINE Alu 5 312 0 563 281 15 36 chr11 99838363 99838559 -48944913 - MIR SINE MIR -51 211 20 235 276 0 26 chr11 99840211 99840287 -48943185 - L2 LINE L2 -2 3311 3238 204 357 91 26 chr11 99840464 99840803 -48942669 - L2 LINE L2 -337 2977 2617 220 269 90 0 chr11 99841687 99841754 -48941718 - L2 LINE L2 -46 3226 3154 2278 156 3 0 chr11 99842545 99842891 -48940581 + MER7A DNA MER2_type 2 346 0 360 279 197 0 chr11 99842956 99843103 -48940369 - MER5A DNA MER1_type -7 182 7 219 189 0 0 chr11 99843313 99843366 -48940106 + (CA)n Simple_repeat Simple_repeat 2 54 0 333 303 46 56 chr11 99844432 99844627 -48938845 - MIR SINE MIR -56 206 14 444 308 173 13 chr11 99844647 99844965 -48938507 - L3 LINE CR1 -18 1559 1191 300 352 37 0 chr11 99845154 99845262 -48938210 - L2 LINE L2 0 3272 3161 353 298 63 38 chr11 99846737 99846895 -48936577 - MIR SINE MIR -54 208 47 7287 177 156 41 chr11 99848342 99849915 -48933557 - MER52A LTR ERV1 0 1755 1 187 252 147 101 chr11 99850685 99850943 -48932529 + L2 LINE L2 3000 3269 -3 953 213 0 0 chr11 99851374 99851538 -48931934 - FRAM SINE Alu -12 164 1 225 135 16 6 chr11 99855312 99855556 -48927916 + AluSq SINE Alu 1 298 -2 432 255 57 21 chr11 99855629 99855770 -48927702 - MIR SINE MIR -111 151 6 261 240 40 24 chr11 99858218 99858311 -48925161 - MIR SINE MIR -67 141 68 687 182 41 0 chr11 99858510 99858631 -48924841 - FLAM_A SINE Alu -4 129 4 2157 123 0 3 chr11 99859928 99860230 -48923242 + AluSc SINE Alu 1 301 -8 182 125 0 25 chr11 99860808 99860848 -48922624 + (TTTCC)n Simple_repeat Simple_repeat 5 43 0 350 267 33 40 chr11 99861593 99861743 -48921729 + L2 LINE L2 3146 3294 -19 22 0 0 0 chr11 99864173 99864195 -48919277 + AT_rich Low_complexity Low_complexity 1 22 0 475 229 14 130 chr11 99866189 99866412 -48917060 - MIR SINE MIR -2 260 64 267 167 0 0 chr11 99866417 99866459 -48917013 + Alu SINE Alu 1 42 -260 574 194 0 0 chr11 99866459 99866557 -48916915 + AluJo/FRAM SINE Alu 202 299 -13 474 175 233 0 chr11 99866721 99866841 -48916631 + MER5A DNA MER1_type 9 156 -33 224 262 0 16 chr11 99866924 99866985 -48916487 - MER5A DNA MER1_type -5 184 125 276 243 39 48 chr11 99867137 99867240 -48916232 + MER5A DNA MER1_type 88 189 0 541 269 27 13 chr11 99869299 99869448 -48914024 + MIR SINE MIR 66 216 -46 2238 95 7 0 chr11 99869944 99870227 -48913245 - AluSp SINE Alu -28 285 1 334 226 105 57 chr11 99870750 99870874 -48912598 + MIR SINE MIR 8 137 -125 607 206 108 36 chr11 99870936 99871130 -48912342 + MER63A DNA MER1_type 1 208 -2 863 271 104 64 chr11 99872410 99873007 -48910465 + HAL1 LINE L1 58 678 -1829 327 296 38 61 chr11 99873031 99873163 -48910309 + HAL1 LINE L1 763 891 -1616 281 91 91 0 chr11 99873164 99873208 -48910264 - MLT2C2 LTR ERVL 0 520 473 894 136 0 0 chr11 99873209 99873341 -48910131 - Tigger5 DNA MER2_type 0 2323 2192 485 240 10 0 chr11 99873331 99873427 -48910045 - Tigger5 DNA MER2_type -2226 97 1 * 1434 146 128 144 chr11 99873454 99873885 -48909587 - MLT2C2 LTR ERVL -40 424 1 472 177 92 37 chr11 99873885 99874049 -48909423 + HAL1 LINE L1 888 1060 -1447 21 36 0 0 chr11 99874191 99874219 -48909253 + GC_rich Low_complexity Low_complexity 1 28 0 2831 223 69 25 chr11 99874323 99874692 -48908780 + MER21B LTR ERV1 89 440 -423 2190 81 3 3 chr11 99874692 99875028 -48908444 - AluY SINE Alu 0 336 1 2831 223 69 25 chr11 99875028 99875342 -48908130 + MER21B LTR ERV1 440 803 -60 939 190 102 33 chr11 99875604 99875941 -48907531 + LTR64 LTR ERVK 147 550 -8 229 269 99 64 chr11 99876296 99876437 -48907035 + MIR SINE MIR 9 154 -108 569 264 132 5 chr11 99876479 99876676 -48906796 - MIR SINE MIR -28 234 13 210 348 106 19 chr11 99876704 99876865 -48906607 - MIR SINE MIR -31 231 57 249 282 136 27 chr11 99877009 99877119 -48906353 - MIR SINE MIR -67 141 19 254 344 46 8 chr11 99877712 99877843 -48905629 + MIR3 SINE MIR 44 179 -29 315 228 198 10 chr11 99877907 99878008 -48905464 + L2 LINE L2 3194 3313 0 198 133 17 50 chr11 99879154 99879214 -48904258 + GA-rich Low_complexity Low_complexity 1 58 0 1079 218 172 43 chr11 99879241 99879705 -48903767 + MLT1F LTR MaLR 19 542 0 361 241 233 0 chr11 99879705 99879838 -48903634 + MLT1F-int LTR MaLR 1 164 -1207 7964 29 1 1 chr11 99879940 99880837 -48902635 - MER11D LTR ERVK 0 897 1 8184 42 0 0 chr11 99880837 99881807 -48901665 - HERVK11D LTR ERVK 0 7752 6783 * 10526 39 4 1 chr11 99881797 99883017 -48900455 - HERVK11D LTR ERVK -1161 6591 5368 * 15092 28 0 5 chr11 99883007 99884748 -48898724 - HERVK11D LTR ERVK -2948 4804 3073 6877 63 6 1 chr11 99884748 99885606 -48897866 - HERVK11D LTR ERVK -6890 862 1 7780 30 3 5 chr11 99885606 99886504 -48896968 - MER11D LTR ERVK 0 897 1 236 303 92 0 chr11 99886581 99886657 -48896815 - L2 LINE L2 -27 3245 3163 381 131 0 0 chr11 99886848 99886909 -48896563 + (TCCC)n Simple_repeat Simple_repeat 1 61 0 969 84 22 22 chr11 99886909 99887087 -48896385 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 1179 151 0 58 chr11 99887090 99887296 -48896176 - AluJo SINE Alu -33 279 86 210 307 70 9 chr11 99887466 99887580 -48895892 + MIR3 SINE MIR 4 124 -84 706 178 0 37 chr11 99887605 99887740 -48895732 + FLAM_C SINE Alu 1 130 -3 1397 135 25 5 chr11 99888081 99888444 -48895028 - LTR23 LTR ERV1 0 437 1 340 288 102 58 chr11 99888530 99888930 -48894542 + L1ME4a LINE L1 5474 5891 -230 388 256 26 51 chr11 99888964 99889081 -48894391 - L2 LINE L2 -16 3297 3184 1829 116 16 236 chr11 99889391 99889630 -48893842 - Tigger2 DNA MER2_type -4 2714 2510 715 189 0 0 chr11 99889630 99889762 -48893710 + FLAM_C SINE Alu 1 132 -11 1829 116 16 236 chr11 99889762 99889958 -48893514 - Tigger2 DNA MER2_type -208 2510 2273 456 147 15 0 chr11 99889948 99890016 -48893456 - Tigger2 DNA MER2_type -2649 69 1 * 550 276 150 10 chr11 99890137 99890431 -48893041 - MER102b DNA MER1_type -2 339 5 2690 103 28 107 chr11 99890811 99890979 -48892493 - L1MA4 LINE L1 -5 6295 6115 923 195 43 0 chr11 99890979 99891143 -48892329 - FAM SINE Alu -2 173 3 2690 103 28 107 chr11 99891143 99891507 -48891965 - L1MA4 LINE L1 -185 6115 5805 2972 125 3 63 chr11 99891509 99892209 -48891263 + L1MA4 LINE L1 5142 5787 -513 242 310 145 7 chr11 99892228 99892373 -48891099 + MIR SINE MIR 48 212 -50 184 273 15 0 chr11 99892511 99892577 -48890895 - L2 LINE L2 -653 2661 2595 246 254 42 68 chr11 99892726 99892844 -48890628 - L2 LINE L2 -16 3297 3183 868 195 30 88 chr11 99892988 99893285 -48890187 - L1MC5 LINE L1 -30 7931 7652 1737 143 17 27 chr11 99893287 99893581 -48889891 - AluJo SINE Alu 0 312 22 3671 146 12 10 chr11 99893849 99894452 -48889020 - L1MC1 LINE L1 -191 6142 5539 460 250 159 48 chr11 99895313 99895487 -48887985 - L2 LINE L2 -421 2893 2681 2188 109 14 0 chr11 99895487 99895780 -48887692 + AluSx SINE Alu 1 297 -15 460 250 159 48 chr11 99895780 99895857 -48887615 - L2 LINE L2 -633 2681 2614 763 173 0 8 chr11 99896307 99896434 -48887038 - FLAM_C SINE Alu -17 126 1 213 250 52 52 chr11 99896658 99896754 -48886718 - L2 LINE L2 -1 3271 3176 216 86 0 0 chr11 99896979 99897014 -48886458 + (T)n Simple_repeat Simple_repeat 1 35 0 267 119 0 0 chr11 99897032 99897074 -48886398 - L1PA8 LINE L1 -3 6169 6128 918 122 8 0 chr11 99897249 99897372 -48886100 - AluJb SINE Alu -188 124 1 389 174 31 41 chr11 99898285 99898383 -48885089 - Charlie8 DNA MER1_type -2255 162 66 1787 172 20 7 chr11 99899725 99900022 -48883450 - AluSx SINE Alu -11 301 1 181 288 127 51 chr11 99900080 99900198 -48883274 + MIR SINE MIR 19 145 -63 313 118 20 0 chr11 99900203 99900254 -48883218 - L1M1 LINE L1 -693 5610 5559 * 1137 184 34 44 chr11 99900253 99900559 -48882913 - L1MA4A LINE L1 -710 5593 5287 4213 110 22 23 chr11 99900560 99900944 -48882528 + L1MA4A LINE L1 5617 6001 -302 192 40 0 0 chr11 99900944 99900969 -48882503 + (TG)n Simple_repeat Simple_repeat 1 25 0 4213 110 22 23 chr11 99900969 99901268 -48882204 + L1MA4A LINE L1 6001 6299 -4 494 206 206 7 chr11 99901344 99901499 -48881973 - MIR SINE MIR 0 262 77 781 169 29 169 chr11 99901529 99901772 -48881700 + MER21B LTR ERV1 13 221 -642 338 0 24 0 chr11 99901919 99901961 -48881511 + (CA)n Simple_repeat Simple_repeat 1 43 0 221 204 19 0 chr11 99902034 99902088 -48881384 + (TA)n Simple_repeat Simple_repeat 2 56 0 359 308 10 0 chr11 99902722 99902826 -48880646 + MIR SINE MIR 27 131 -131 360 0 0 0 chr11 99903050 99903090 -48880382 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1132 188 38 0 chr11 99903092 99903305 -48880167 - AluJb SINE Alu -32 280 60 2293 91 0 10 chr11 99905596 99905893 -48877579 - AluSx SINE Alu -18 294 1 188 351 9 48 chr11 99907421 99907652 -48875820 + L2 LINE L2 1614 1835 -1479 2010 124 63 61 chr11 99908771 99909091 -48874381 + THE1B LTR MaLR 1 324 -40 1956 98 80 14 chr11 99909091 99909240 -48874232 - AluSp SINE Alu -8 305 167 2514 44 7 3 chr11 99909240 99909534 -48873938 - AluY SINE Alu -16 295 1 1956 98 80 14 chr11 99909534 99909670 -48873802 - AluSp SINE Alu -146 167 1 2010 124 63 61 chr11 99909670 99909712 -48873760 + THE1B LTR MaLR 324 364 0 231 287 11 11 chr11 99911270 99911364 -48872108 + L2 LINE L2 1859 1952 -1362 181 328 197 8 chr11 99912559 99912681 -48870791 + L2 LINE L2 3167 3311 -2 583 251 82 38 chr11 99915763 99915946 -48867526 - MIR SINE MIR -21 241 51 389 199 26 39 chr11 99917447 99917603 -48865869 + (CA)n Simple_repeat Simple_repeat 2 155 0 643 293 17 22 chr11 99917613 99917845 -48865627 + MIR SINE MIR 32 262 0 1411 161 37 25 chr11 99917935 99918177 -48865295 + AluJb SINE Alu 64 308 -4 569 305 64 9 chr11 99918431 99918664 -48864808 - MIR SINE MIR -6 256 11 212 150 0 50 chr11 99918878 99918918 -48864554 + MER5A DNA MER1_type 45 82 -107 206 211 79 26 chr11 99920038 99920114 -48863358 + MER5B DNA MER1_type 99 178 0 1203 243 4 16 chr11 99920209 99920464 -48863008 - MIR SINE MIR -8 254 3 1802 149 13 7 chr11 99920481 99920789 -48862683 - L1M3 LINE L1 -523 5645 5336 334 128 0 0 chr11 99920795 99920842 -48862630 + MLT1A1 LTR MaLR 3 49 -325 336 71 54 2 chr11 99920842 99920898 -48862574 - MLT2A1 LTR ERVL 0 444 392 7111 62 0 8 chr11 99920898 99921767 -48861705 - HERVL-A1 LTR ERVL -4792 862 1 3301 92 2 29 chr11 99921767 99921810 -48861662 - MLT2A1 LTR ERVL 0 444 401 351 113 0 0 chr11 99921810 99921863 -48861609 + (TG)n Simple_repeat Simple_repeat 2 54 0 3301 92 2 29 chr11 99921863 99922275 -48861197 - MLT2A1 LTR ERVL -43 401 1 1801 200 6 3 chr11 99922275 99922595 -48860877 + MLT1A1 LTR MaLR 45 365 0 2037 195 16 52 chr11 99922595 99923098 -48860374 - L1M3 LINE L1 -810 5336 4852 4619 171 27 14 chr11 99923099 99924017 -48859455 + L1 LINE L1 3961 4890 -1256 832 172 0 0 chr11 99924564 99924692 -48858780 - FLAM_C SINE Alu -10 133 6 315 271 10 10 chr11 99924715 99924811 -48858661 + L1MCc LINE L1 1155 1250 -5173 2224 117 3 0 chr11 99924951 99925251 -48858221 + AluSx SINE Alu 5 305 -7 2482 170 24 24 chr11 99925402 99925862 -48857610 - MER68 LTR ERV1 -102 460 1 1000 182 56 0 chr11 99925867 99926081 -48857391 + L1M4 LINE L1 2853 3078 -3068 1075 181 52 0 chr11 99926110 99926303 -48857169 - MER68 LTR ERV1 -359 203 1 993 182 56 0 chr11 99926308 99926522 -48856950 + L1M4 LINE L1 2853 3078 -3068 1088 162 50 0 chr11 99926551 99926730 -48856742 - MER68 LTR ERV1 -359 203 16 5856 228 58 47 chr11 99926730 99926944 -48856528 + L1M4 LINE L1 3267 3477 -2669 2571 86 3 3 chr11 99926944 99927280 -48856192 - L1PA13 LINE L1 -7 6156 5821 5856 228 58 47 chr11 99927280 99928004 -48855468 + L1M4 LINE L1 3477 4192 -1954 3520 77 29 2 chr11 99928004 99928457 -48855015 - L1PA11 LINE L1 0 6174 5710 5856 228 58 47 chr11 99928457 99929378 -48854094 + L1M4 LINE L1 4192 5153 -993 2453 86 9 3 chr11 99929378 99929703 -48853769 + L1MA1 LINE L1 5969 6295 -7 5856 228 58 47 chr11 99929703 99929887 -48853585 + L1M4 LINE L1 5153 5334 -812 1154 260 6 12 chr11 99929878 99930224 -48853248 + L1MD2 LINE L1 4940 5283 -863 * 2114 120 12 30 chr11 99930224 99930558 -48852914 + L1MB2 LINE L1 5841 6168 -3 1488 142 108 11 chr11 99930558 99930851 -48852621 - AluSx SINE Alu 0 318 1 28 0 0 0 chr11 99930851 99930879 -48852593 + AT_rich Low_complexity Low_complexity 1 28 0 5135 88 6 1 chr11 99930943 99931601 -48851871 - L1PA10 LINE L1 -12 6156 5496 3596 117 21 3 chr11 99931601 99932263 -48851209 + L1PA10 LINE L1 4815 5485 -689 789 247 0 6 chr11 99932263 99932425 -48851047 - FRAM SINE Alu -5 161 1 21 0 0 0 chr11 99932434 99932455 -48851017 + AT_rich Low_complexity Low_complexity 1 21 0 4807 162 82 29 chr11 99932522 99933104 -48850368 + L1MD2 LINE L1 5311 5860 -499 2006 165 37 32 chr11 99933104 99933188 -48850284 - L1MB2 LINE L1 -7 6164 6082 1943 145 0 41 chr11 99933188 99933402 -48850070 - AluSx SINE Alu 0 312 141 2383 80 13 0 chr11 99933402 99933701 -48849771 - AluSp SINE Alu -10 303 1 1943 145 0 41 chr11 99933701 99933837 -48849635 - AluSx SINE Alu -171 141 1 2006 165 37 32 chr11 99933837 99934157 -48849315 - L1MB2 LINE L1 -89 6082 5758 4807 162 82 29 chr11 99934157 99934548 -48848924 + L1MD2 LINE L1 5860 6336 -23 2563 56 0 7 chr11 99934548 99934852 -48848620 - AluY SINE Alu -9 302 1 353 203 49 86 chr11 99934876 99935039 -48848433 + L1ME LINE L1 5322 5478 -692 2838 160 58 2 chr11 99935173 99935641 -48847831 + Tigger7 DNA MER2_type 32 525 -208 386 210 0 37 chr11 99935635 99935716 -48847756 + Tigger7 DNA MER2_type 2496 2573 -14 * 748 244 0 13 chr11 99935781 99935937 -48847535 - FRAM SINE Alu -22 154 1 699 218 13 6 chr11 99935969 99936125 -48847347 + L1ME LINE L1 5618 5774 -390 493 313 73 26 chr11 99936146 99936338 -48847134 - MARNA DNA Mariner -84 502 302 1809 179 3 7 chr11 99936340 99936636 -48846836 + AluJo SINE Alu 1 295 -17 499 248 124 7 chr11 99936681 99936826 -48846646 - MER5B DNA MER1_type -2 176 15 2510 209 10 18 chr11 99936903 99937414 -48846058 + LTR31 LTR ERV1 98 604 -15 209 74 0 0 chr11 99937424 99937451 -48846021 - MER5B DNA MER1_type -148 30 4 729 253 20 30 chr11 99937462 99937664 -48845808 - MARNA DNA Mariner -364 222 23 4517 93 0 0 chr11 99938040 99938661 -48844811 - L1PA7 LINE L1 -1046 5100 4480 7439 61 5 0 chr11 99938665 99939697 -48843775 + L1PA7 LINE L1 5109 6147 -7 182 143 20 0 chr11 99939703 99939752 -48843720 + (TAA)n Simple_repeat Simple_repeat 1 50 0 5386 114 17 7 chr11 99940414 99941178 -48842294 + MER4E LTR ERV1 1 772 -7 288 247 86 0 chr11 99941208 99941289 -48842183 - MIR SINE MIR -93 169 82 2299 124 39 20 chr11 99941354 99941709 -48841763 - THE1B LTR MaLR -2 362 1 247 212 24 71 chr11 99942469 99942526 -48840946 + MER94 DNA DNA 28 81 -53 2820 7 0 0 chr11 99942526 99942828 -48840644 + AluY SINE Alu 1 302 -9 247 212 24 71 chr11 99942828 99942855 -48840617 + MER94 DNA DNA 81 108 -26 564 107 0 0 chr11 99942859 99942934 -48840538 + THE1A LTR MaLR 5 79 -276 668 74 0 0 chr11 99942936 99943017 -48840455 + THE1A LTR MaLR 275 355 0 1567 190 62 28 chr11 99943075 99943428 -48840044 + MLT1A1 LTR MaLR 1 365 0 447 315 80 1 chr11 99943952 99944167 -48839305 + MIR SINE MIR 19 248 -14 270 222 90 84 chr11 99944946 99945113 -48838359 + MER110A LTR ERV1 1 168 -300 534 254 224 5 chr11 99945228 99945433 -48838039 + MER110 LTR ERV1 235 484 -7 205 253 99 55 chr11 99945701 99945792 -48837680 + L2 LINE L2 3150 3244 -28 2429 33 0 0 chr11 99945874 99946144 -48837328 - L1PA4 LINE L1 -8 6147 5878 569 16 0 0 chr11 99946144 99946206 -48837266 + L1PA4 LINE L1 5831 5892 -263 553 261 69 97 chr11 99946860 99947220 -48836252 + MLT1J LTR MaLR 114 463 -48 535 235 9 17 chr11 99947241 99947356 -48836116 + MER81 DNA DNA 1 114 0 870 114 83 0 chr11 99947395 99947527 -48835945 - L1PA13 LINE L1 -19 6144 6002 1312 132 104 8 chr11 99947672 99947922 -48835550 - L1MA6 LINE L1 -4 6296 6023 2754 161 55 45 chr11 99948569 99948906 -48834566 - L1MB5 LINE L1 -8 6166 5819 2516 59 0 3 chr11 99948906 99949211 -48834261 - AluY SINE Alu -7 304 1 2754 161 55 45 chr11 99949211 99949456 -48834016 - L1MB5 LINE L1 -355 5819 5578 880 138 8 0 chr11 99949546 99949676 -48833796 - FLAM_C SINE Alu -10 133 3 253 333 126 22 chr11 99949852 99949987 -48833485 + L2 LINE L2 3165 3313 0 1891 164 0 7 chr11 99950133 99950437 -48833035 + AluSx SINE Alu 1 302 -10 458 130 0 0 chr11 99951229 99951298 -48832174 - MSTB2 LTR MaLR -1 456 388 987 164 127 143 chr11 99951337 99951656 -48831816 - MSTB2 LTR MaLR -55 402 80 1790 169 25 3 chr11 99951656 99951940 -48831532 - AluJb SINE Alu -22 290 1 846 230 12 0 chr11 99951947 99952108 -48831364 - FRAM SINE Alu -3 163 1 987 164 127 143 chr11 99952108 99952165 -48831307 - MSTB2 LTR MaLR -383 74 24 4694 241 102 86 chr11 99952179 99953742 -48829730 - MSTC-int LTR MaLR -3 1732 138 2244 96 0 29 chr11 99953742 99954055 -48829417 - AluSx SINE Alu -8 304 1 4694 241 102 86 chr11 99954055 99954195 -48829277 - MSTC-int LTR MaLR -1597 138 2 1186 186 87 26 chr11 99954195 99954553 -48828919 - MSTC LTR MaLR -2 426 1 417 167 22 33 chr11 99955390 99955480 -48827992 + FLAM_A SINE Alu 54 142 0 1522 178 13 0 chr11 99956350 99956586 -48826886 - MER8 DNA MER2_type 0 239 1 1529 178 74 12 chr11 99956850 99957287 -48826185 - LTR54 LTR ERV1 0 510 1 248 299 99 43 chr11 99957373 99958429 -48825043 + L1MC4a LINE L1 4787 5612 -747 226 271 161 17 chr11 99960532 99960650 -48822822 - L2 LINE L2 -19 3294 3160 1018 304 50 18 chr11 99960845 99961341 -48822131 + L1MC4a LINE L1 5446 5957 -1851 2398 184 33 2 chr11 99961349 99961773 -48821699 + MLT2B3 LTR ERVL 1 437 -117 276 233 0 27 chr11 99962052 99962125 -48821347 - MLT1I LTR MaLR 0 409 339 1014 182 18 12 chr11 99962131 99962301 -48821171 + FAM SINE Alu 1 171 -4 733 112 25 137 chr11 99962407 99962568 -48820904 + MLT2B2 LTR ERVL 371 513 -2 1769 138 238 11 chr11 99962708 99963057 -48820415 + MSTA LTR MaLR 1 428 0 279 363 80 0 chr11 99964255 99964368 -48819104 - L2 LINE L2 -4 3268 3147 325 279 10 36 chr11 99964627 99964819 -48818653 + L1MC4 LINE L1 7353 7576 -466 636 263 0 0 chr11 99964820 99964957 -48818515 + MLT1F LTR MaLR 1 137 -405 234 233 180 66 chr11 99965159 99965476 -48817996 + L1ME4a LINE L1 5742 6094 -27 505 299 45 1 chr11 99966895 99967059 -48816413 + MIR SINE MIR 18 188 -62 241 246 0 33 chr11 99968135 99968196 -48815276 + L2 LINE L2 3255 3313 0 1212 86 40 10 chr11 99968387 99968585 -48814887 - L1MA8 LINE L1 -3 6288 6085 414 279 117 43 chr11 99969182 99969265 -48814207 - MIR SINE MIR -4 258 182 1559 192 92 27 chr11 99969265 99969635 -48813837 - MSTD LTR MaLR 0 396 3 414 279 117 43 chr11 99969635 99969768 -48813704 - MIR SINE MIR -80 182 30 266 299 139 52 chr11 99969796 99970141 -48813331 - L3 LINE CR1 -875 702 328 374 243 51 74 chr11 99971150 99971432 -48812040 - L1ME3 LINE L1 -8 6162 5883 232 215 15 15 chr11 99971415 99971480 -48811992 - L1ME2 LINE L1 -213 5934 5870 * 751 257 142 64 chr11 99971484 99972368 -48811104 - L1ME2 LINE L1 -473 5672 4707 586 211 30 6 chr11 99972397 99972563 -48810909 - L1ME2 LINE L1 -1580 4549 4380 262 328 40 55 chr11 99972564 99972765 -48810707 + LTR67 LTR ERVL 94 291 -266 331 279 45 0 chr11 99972936 99973047 -48810425 - L1ME2 LINE L1 -1777 4352 4237 277 243 45 36 chr11 99973079 99973190 -48810282 + CT-rich Low_complexity Low_complexity 3 114 0 * 280 333 0 0 chr11 99973117 99973192 -48810280 + polypyrimidine Low_complexity Low_complexity 4 78 0 1085 248 122 33 chr11 99973385 99974084 -48809388 - L1ME2 LINE L1 -2750 3379 2619 657 155 35 9 chr11 99974103 99974219 -48809253 + L1PA16 LINE L1 5933 6051 -115 2083 157 43 39 chr11 99974219 99974768 -48808704 + MLT2A2 LTR ERVL 1 554 0 598 187 15 0 chr11 99974768 99974882 -48808590 + L1PA16 LINE L1 6047 6165 0 393 292 171 40 chr11 99974902 99975495 -48807977 - L1ME2 LINE L1 -3559 2570 1950 22 0 0 0 chr11 99975807 99975829 -48807643 + AT_rich Low_complexity Low_complexity 1 22 0 631 226 0 0 chr11 99975920 99976053 -48807419 - FAM SINE Alu -8 41 1 352 268 141 20 chr11 99976071 99976353 -48807119 - L1ME2 LINE L1 -4714 1416 1149 205 149 43 0 chr11 99976354 99976401 -48807071 + (TA)n Simple_repeat Simple_repeat 2 50 0 680 310 59 57 chr11 99976401 99976784 -48806688 - L1ME2 LINE L1 -4991 1128 742 245 75 25 0 chr11 99976784 99976824 -48806648 + (TTG)n Simple_repeat Simple_repeat 2 42 0 680 310 59 57 chr11 99976824 99977002 -48806470 - L1ME2 LINE L1 -5377 742 566 210 143 0 0 chr11 99977090 99977125 -48806347 + (CTTG)n Simple_repeat Simple_repeat 2 36 0 246 258 30 0 chr11 99977456 99977522 -48805950 - MLT1I LTR MaLR -7 402 335 42857 41 3 0 chr11 99977550 99982663 -48800809 + L1P LINE L1 1 5129 -1017 1833 61 0 0 chr11 99982667 99982898 -48800574 + L1PA4 LINE L1 5922 6152 -3 609 167 18 0 chr11 99982914 99983028 -48800444 - FLAM_A SINE Alu -17 116 1 745 190 90 43 chr11 99983109 99983320 -48800152 - MLT1I LTR MaLR -188 221 1 22 0 0 0 chr11 99983347 99983369 -48800103 + AT_rich Low_complexity Low_complexity 1 22 0 227 333 22 0 chr11 99983950 99984040 -48799432 - L2 LINE L2 -41 3272 3181 299 279 67 10 chr11 99984066 99984170 -48799302 + MLT1J1 LTR MaLR 196 305 -141 221 284 31 39 chr11 99984368 99984495 -48798977 - L2 LINE L2 -1011 2303 2178 1406 168 6 100 chr11 99986424 99986763 -48796709 + AluJo SINE Alu 1 307 -5 423 0 0 0 chr11 99988671 99988718 -48794754 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 21 0 0 0 chr11 99989476 99989497 -48793975 + AT_rich Low_complexity Low_complexity 1 21 0 484 153 108 9 chr11 99989901 99990012 -48793460 - MER95 LTR ERV 0 431 310 2632 64 0 0 chr11 99990013 99990324 -48793148 + AluY SINE Alu 1 311 0 2550 36 0 0 chr11 99990324 99990625 -48792847 + L1P LINE L1 3691 3991 -2155 1678 134 0 0 chr11 99990726 99990964 -48792508 + AluSx SINE Alu 59 296 -16 393 305 92 32 chr11 99993891 99994173 -48789299 + MER58B DNA MER1_type 43 341 0 383 317 89 60 chr11 99996997 99997366 -48786106 - L1M4 LINE L1 -2919 3227 2848 644 176 92 0 chr11 99998462 99998581 -48784891 - FLAM_C SINE Alu -2 131 2 28 0 0 0 chr11 100002063 100002091 -48781381 + AT_rich Low_complexity Low_complexity 1 28 0 2483 74 0 0 chr11 100002264 100002563 -48780909 - AluY SINE Alu -12 299 1 21 36 0 0 chr11 100002867 100002895 -48780577 + AT_rich Low_complexity Low_complexity 1 28 0 3280 119 8 10 chr11 100003188 100003694 -48779778 - L1MA1 LINE L1 -4 6298 5794 398 323 15 8 chr11 100003717 100003850 -48779622 - MLT1K LTR MaLR -163 425 292 1293 283 86 38 chr11 100004453 100005399 -48778073 - L1M4 LINE L1 -1827 4319 3329 1095 182 0 0 chr11 100005442 100005618 -48777854 + MLT2B2 LTR ERVL 1 176 -339 410 264 155 73 chr11 100005625 100005928 -48777544 + LTR67 LTR ERVL 214 541 -16 2487 68 0 0 chr11 100006897 100007191 -48776281 - AluY SINE Alu -17 294 1 697 283 102 43 chr11 100007198 100007661 -48775811 + L2 LINE L2 2824 3313 0 2037 117 57 41 chr11 100007835 100008204 -48775268 - THE1C LTR MaLR 0 375 1 228 35 0 0 chr11 100008666 100008695 -48774777 + (CTG)n Simple_repeat Simple_repeat 2 30 0 307 260 110 65 chr11 100010282 100010482 -48772990 + MLT1L LTR MaLR 287 600 -15 227 382 32 16 chr11 100011393 100011579 -48771893 + L2 LINE L2 2569 2757 -557 197 345 154 0 chr11 100011856 100011966 -48771506 - L2 LINE L2 -4 3268 3142 3027 173 49 19 chr11 100011998 100012043 -48771429 + ERVL LTR ERVL 4801 4843 -921 1876 171 78 47 chr11 100012043 100012492 -48770980 - MER31B LTR ERV1 -3 463 1 3027 173 49 19 chr11 100012492 100013019 -48770453 + ERVL LTR ERVL 4843 5390 -374 205 109 43 0 chr11 100013138 100013184 -48770288 + (TA)n Simple_repeat Simple_repeat 2 49 0 357 310 14 21 chr11 100013186 100013331 -48770141 + MER5B DNA MER1_type 21 164 -14 2239 123 0 0 chr11 100013515 100013808 -48769664 - AluSx SINE Alu -19 293 1 372 304 14 29 chr11 100013834 100013972 -48769500 - MIR SINE MIR -9 253 118 237 363 0 12 chr11 100013973 100014053 -48769419 + MIR SINE MIR 12 90 -172 282 241 158 38 chr11 100014191 100014324 -48769148 - MLT1J LTR MaLR -2 509 361 1387 92 17 5 chr11 100014330 100014540 -48768932 - L1ME LINE L1 -561 5563 5347 293 203 76 25 chr11 100015094 100015173 -48768299 - L2 LINE L2 0 3313 3231 2213 108 10 7 chr11 100015294 100015600 -48767872 - AluSx SINE Alu -5 307 1 399 21 0 0 chr11 100015611 100015659 -48767813 + (TG)n Simple_repeat Simple_repeat 1 48 0 247 322 176 19 chr11 100017622 100017883 -48765589 + MLT1J LTR MaLR 71 372 -139 376 305 69 15 chr11 100018223 100018354 -48765118 - MIR3 SINE MIR -30 178 41 21 95 0 0 chr11 100019512 100019575 -48763897 + AT_rich Low_complexity Low_complexity 1 63 0 200 161 16 0 chr11 100019632 100019694 -48763778 + (TA)n Simple_repeat Simple_repeat 1 63 0 252 59 0 0 chr11 100019698 100019732 -48763740 + (TG)n Simple_repeat Simple_repeat 1 34 0 225 0 0 0 chr11 100019784 100019809 -48763663 + (TG)n Simple_repeat Simple_repeat 2 26 0 316 162 108 81 chr11 100019809 100019920 -48763552 - HAL1 LINE L1 -19 2488 2375 1879 151 0 14 chr11 100019921 100020205 -48763267 - AluJb SINE Alu -15 297 18 488 70 84 0 chr11 100020409 100020480 -48762992 - MADE1 DNA Mariner 0 80 4 437 335 20 25 chr11 100020535 100020735 -48762737 - LTR67 LTR ERVL -323 234 36 972 176 341 24 chr11 100020741 100021031 -48762441 + L1M1 LINE L1 21 402 -7163 4173 119 53 58 chr11 100021075 100021923 -48761549 + L1M1 LINE L1 2530 3373 -4192 6966 161 21 24 chr11 100021925 100023409 -48760063 + L1M1 LINE L1 4403 5882 -1683 5684 204 72 27 chr11 100023417 100024654 -48758818 + L1PA12 LINE L1 7 1187 -6397 1955 144 3 46 chr11 100024654 100024980 -48758492 - AluSx SINE Alu 0 312 1 5684 204 72 27 chr11 100024980 100026155 -48757317 + L1PA12 LINE L1 1187 3381 -4203 1741 174 9 0 chr11 100026288 100026609 -48756863 - MER95 LTR ERV -107 324 1 278 209 0 0 chr11 100026755 100026822 -48756650 - MER51-int LTR ERV1 -133 6668 6602 * 329 245 21 0 chr11 100026796 100026890 -48756582 - MER51-int LTR ERV1 -686 7130 7035 4314 105 10 39 chr11 100027240 100027597 -48755875 - L1PA12 LINE L1 0 6168 5839 2325 92 6 13 chr11 100027597 100027912 -48755560 - AluSq SINE Alu 0 313 1 4314 105 10 39 chr11 100027912 100028251 -48755221 - L1PA12 LINE L1 -329 5839 5492 2567 124 54 12 chr11 100028833 100029260 -48754212 - MER65A LTR ERV1 0 445 1 6932 64 8 4 chr11 100030996 100032220 -48751252 - L1PA7 LINE L1 -1 6153 4927 995 172 10 0 chr11 100032772 100032975 -48750497 - L1MA4 LINE L1 -13 6287 6083 1237 181 34 43 chr11 100033209 100033535 -48749937 + MER33 DNA MER1_type 1 323 -1 27 0 0 0 chr11 100034527 100034554 -48748918 + AT_rich Low_complexity Low_complexity 1 27 0 872 255 71 11 chr11 100034845 100035249 -48748223 + L1MC4 LINE L1 7102 7495 -547 976 204 46 89 chr11 100035249 100035348 -48748124 - MER39 LTR ERV1 0 637 535 2028 120 16 67 chr11 100035348 100035722 -48747750 - THE1A LTR MaLR 0 355 1 11748 94 3 1 chr11 100035722 100037298 -48746174 - THE1A-int LTR MaLR 0 1580 1 2588 90 6 11 chr11 100037298 100037655 -48745817 - THE1A LTR MaLR 0 355 1 976 204 46 89 chr11 100037655 100038022 -48745450 - MER39 LTR ERV1 -99 538 109 401 181 124 38 chr11 100038021 100038126 -48745346 - MER39 LTR ERV1 -573 134 21 * 923 170 81 14 chr11 100038144 100038367 -48745105 + MER33 DNA MER1_type 16 253 -71 2789 249 68 21 chr11 100039617 100041025 -48742447 + L1ME3 LINE L1 4107 5576 -588 849 215 6 11 chr11 100041465 100041642 -48741830 + MER41D LTR ERV1 382 557 0 315 247 0 0 chr11 100041643 100041728 -48741744 + L1ME3 LINE L1 5678 5762 -400 211 343 0 0 chr11 100041735 100041805 -48741667 + (TATATG)n Simple_repeat Simple_repeat 5 74 0 890 215 14 14 chr11 100041811 100042025 -48741447 + L1ME3 LINE L1 5782 5995 -167 542 200 9 0 chr11 100042149 100042264 -48741208 + L1ME3 LINE L1 6039 6154 -8 2432 148 68 25 chr11 100042691 100043203 -48740269 - MER34C LTR ERV1 -4 581 48 267 294 22 0 chr11 100043220 100043312 -48740160 + MLT1L LTR MaLR 157 250 -365 3490 130 103 31 chr11 100043313 100043991 -48739481 + LTR8A LTR ERV1 1 727 0 198 0 0 0 chr11 100044004 100044026 -48739446 + (TG)n Simple_repeat Simple_repeat 1 22 0 291 295 134 7 chr11 100044304 100044453 -48739019 + L2 LINE L2 2915 3082 -190 1121 207 24 64 chr11 100044462 100044791 -48738681 + LTR39 LTR ERV1 1 316 -467 765 217 22 17 chr11 100044858 100045038 -48738434 + LTR39 LTR ERV1 603 783 0 2251 95 6 38 chr11 100045161 100045476 -48737996 + AluSx SINE Alu 1 305 -7 1729 168 72 17 chr11 100045811 100046156 -48737316 + MLT1A1 LTR MaLR 1 364 -1 184 264 0 75 chr11 100047441 100047494 -48735978 + MIR SINE MIR 23 71 -137 2544 58 0 0 chr11 100047836 100048130 -48735342 + AluY SINE Alu 2 295 -16 702 280 51 42 chr11 100048258 100048594 -48734878 + L2 LINE L2 2085 2423 -891 1560 193 80 34 chr11 100048827 100049087 -48734385 - MER63B DNA MER1_type -626 436 148 2521 86 0 0 chr11 100049087 100049391 -48734081 - AluY SINE Alu -7 304 1 1560 193 80 34 chr11 100049391 100049545 -48733927 - MER63B DNA MER1_type -914 148 3 219 150 0 0 chr11 100049672 100049712 -48733760 + (TG)n Simple_repeat Simple_repeat 2 41 0 212 333 68 38 chr11 100049714 100049846 -48733626 - L2 LINE L2 -463 2851 2716 3131 113 80 77 chr11 100050688 100051300 -48732172 - LTR18B LTR ERVL 0 614 1 2458 144 37 16 chr11 100051569 100052005 -48731467 + MER65A LTR ERV1 1 445 0 264 367 20 25 chr11 100052595 100052791 -48730681 + L2 LINE L2 2838 3032 -240 541 219 34 25 chr11 100052891 100053010 -48730462 - L2 LINE L2 -2 3311 3192 188 86 29 0 chr11 100053037 100053072 -48730400 + (CAA)n Simple_repeat Simple_repeat 2 37 0 221 300 23 62 chr11 100053184 100053314 -48730158 - MIR SINE MIR -64 144 20 201 247 111 0 chr11 100053813 100053894 -48729578 + L2 LINE L2 2920 3009 -263 1147 166 68 0 chr11 100054010 100054215 -48729257 - MER20 DNA MER1_type 0 219 1 541 241 185 31 chr11 100054269 100054464 -48729008 - MIR SINE MIR -30 232 8 314 316 23 38 chr11 100054598 100054731 -48728741 - LTR50 LTR ERVL -274 521 391 685 186 81 57 chr11 100054749 100054997 -48728475 + LTR50 LTR ERVL 542 795 0 494 302 73 66 chr11 100056292 100056510 -48726962 + MLT1J LTR MaLR 1 216 -295 2255 89 13 3 chr11 100056510 100056812 -48726660 - AluSc SINE Alu -4 305 1 494 302 73 66 chr11 100056812 100057033 -48726439 + MLT1J LTR MaLR 216 443 -68 349 232 0 0 chr11 100058300 100058369 -48725103 - MIR SINE MIR -34 228 160 248 231 15 0 chr11 100058811 100058876 -48724596 + CT-rich Low_complexity Low_complexity 2 67 0 207 286 107 114 chr11 100059044 100059184 -48724288 - MIR SINE MIR -109 153 15 822 204 86 27 chr11 100059269 100059489 -48723983 - MIR SINE MIR -26 236 4 224 255 92 31 chr11 100059685 100059783 -48723689 + MIR SINE MIR 159 262 0 338 355 42 32 chr11 100059796 100059985 -48723487 + MIR SINE MIR 63 253 -9 2012 179 78 11 chr11 100060095 100060531 -48722941 - MLT1C LTR MaLR -2 465 1 1493 172 21 101 chr11 100060666 100060797 -48722675 + AluJo SINE Alu 1 141 -171 2068 149 0 16 chr11 100060797 100061113 -48722359 - AluJb SINE Alu -1 311 1 1493 172 21 101 chr11 100061113 100061307 -48722165 + AluJo SINE Alu 141 300 -12 1431 189 25 69 chr11 100061811 100062171 -48721301 + MLT1A1 LTR MaLR 11 354 -11 284 333 73 0 chr11 100062862 100062985 -48720487 + MIR SINE MIR 49 180 -82 500 185 4 26 chr11 100062988 100063214 -48720258 + L1MB7 LINE L1 4967 5288 -858 2503 159 27 25 chr11 100063215 100063670 -48719802 + L1MB7 LINE L1 5654 6113 -71 2196 106 0 3 chr11 100063670 100063992 -48719480 - AluSg SINE Alu 0 321 1 2503 159 27 25 chr11 100063992 100064050 -48719422 + L1MB7 LINE L1 6113 6169 -15 21 0 0 0 chr11 100064050 100064071 -48719401 + AT_rich Low_complexity Low_complexity 1 21 0 1186 268 134 29 chr11 100064151 100065223 -48718249 - L1MEd LINE L1 -2949 3180 2022 347 298 12 0 chr11 100065415 100065499 -48717973 + polypyrimidine Low_complexity Low_complexity 4 88 0 521 288 69 47 chr11 100065565 100066384 -48717088 - L1MEd LINE L1 -4581 1729 833 375 23 0 0 chr11 100066409 100066453 -48717019 + (CA)n Simple_repeat Simple_repeat 1 44 0 243 275 17 58 chr11 100067106 100067226 -48716246 - L1MEd LINE L1 -5953 166 52 372 337 44 68 chr11 100067278 100067471 -48716001 - L1MEd LINE L1 -5256 863 652 23 33 0 0 chr11 100067471 100067501 -48715971 + AT_rich Low_complexity Low_complexity 1 30 0 372 337 44 68 chr11 100067501 100067643 -48715829 - L1MEd LINE L1 -5467 652 508 225 0 0 0 chr11 100067844 100067869 -48715603 + (TAA)n Simple_repeat Simple_repeat 2 26 0 214 228 109 33 chr11 100067870 100067962 -48715510 - MIR SINE MIR -8 254 156 22 70 0 0 chr11 100068331 100068374 -48715098 + AT_rich Low_complexity Low_complexity 1 43 0 1608 192 85 8 chr11 100068653 100069017 -48714455 + MSTD LTR MaLR 1 392 -4 28 29 0 0 chr11 100069182 100069217 -48714255 + AT_rich Low_complexity Low_complexity 1 35 0 302 277 0 46 chr11 100069379 100069509 -48713963 + MER53 DNA DNA 4 127 -62 216 149 43 0 chr11 100069536 100069583 -48713889 + CT-rich Low_complexity Low_complexity 1 49 0 321 26 0 0 chr11 100070208 100070246 -48713226 + (CA)n Simple_repeat Simple_repeat 1 38 0 296 278 36 52 chr11 100071230 100071424 -48712048 + MLT1L LTR MaLR 411 601 -14 233 297 0 27 chr11 100071480 100071554 -48711918 - MER91B DNA MER1_type -118 72 1 1089 292 80 15 chr11 100071690 100072189 -48711283 - L2 LINE L2 0 3313 2772 843 214 63 59 chr11 100072190 100072304 -48711168 + MER8 DNA MER2_type 1 113 -126 2015 132 4 0 chr11 100072304 100072612 -48710860 + AluSx SINE Alu 1 309 0 843 214 63 59 chr11 100072612 100072734 -48710738 + MER8 DNA MER2_type 113 239 0 192 77 0 0 chr11 100072736 100072762 -48710710 + (TTTTA)n Simple_repeat Simple_repeat 1 26 0 5438 98 19 12 chr11 100072762 100074119 -48709353 - L1PA8 LINE L1 -24 6148 4773 1742 201 61 27 chr11 100074119 100074561 -48708911 - LTR2B LTR ERV1 0 490 34 37678 58 6 1 chr11 100074582 100079490 -48703982 - Harlequin LTR ERV1 0 6896 1966 7590 66 15 21 chr11 100079484 100081016 -48702456 - Harlequin LTR ERV1 -5312 1584 1 * 1521 189 93 35 chr11 100081016 100081454 -48702018 - LTR2B LTR ERV1 0 490 1 527 58 0 0 chr11 100081454 100081523 -48701949 - L1P LINE L1 -1370 4776 4708 * 5783 108 16 2 chr11 100081522 100082433 -48701039 + L1P LINE L1 3787 4710 -1436 251 269 30 0 chr11 100082445 100082512 -48700960 - L2 LINE L2 -548 2766 2698 62 94 0 0 chr11 100082778 100082959 -48700513 + AT_rich Low_complexity Low_complexity 1 181 0 622 277 62 4 chr11 100082967 100083209 -48700263 - L2 LINE L2 -591 2723 2468 390 242 32 16 chr11 100084196 100084320 -48699152 - MIR SINE MIR -8 254 129 396 280 51 0 chr11 100084391 100084509 -48698963 - MIR SINE MIR -94 168 45 2427 193 92 61 chr11 100084655 100085405 -48698067 - MER21B LTR ERV1 -70 793 21 986 152 66 5 chr11 100085543 100085740 -48697732 - MER2 DNA MER2_type -136 209 1 3894 126 64 9 chr11 100085753 100086427 -48697045 - MER50 LTR ERV1 -23 711 1 2165 201 26 4 chr11 100086428 100086926 -48696546 - L1MB8 LINE L1 -24 6154 5646 188 236 28 56 chr11 100087027 100087099 -48696373 - MIR SINE MIR -69 193 124 2114 119 46 0 chr11 100087242 100087570 -48695902 + MER61A LTR ERV1 1 343 0 1414 154 34 73 chr11 100087571 100087929 -48695543 + MER4A LTR ERV1 1 344 -320 785 215 57 48 chr11 100087928 100088256 -48695216 + MER4C LTR ERV1 276 465 0 * 874 189 50 128 chr11 100088807 100089183 -48694289 - MLT1A1 LTR MaLR 0 365 19 1558 197 41 3 chr11 100089215 100089509 -48693963 - AluJo SINE Alu -7 305 1 637 258 91 30 chr11 100090393 100090591 -48692881 + MIR SINE MIR 2 211 -51 528 145 4 32 chr11 100090754 100090857 -48692615 - MER5A DNA MER1_type -79 99 3 1255 161 88 81 chr11 100091014 100091424 -48692048 + MER110A LTR ERV1 1 413 -55 316 194 81 0 chr11 100091930 100091992 -48691480 + L2 LINE L2 3244 3310 -3 227 200 190 20 chr11 100093147 100093247 -48690225 + LTR37B LTR ERV1 5 121 -347 * 406 203 62 67 chr11 100093223 100093537 -48689935 + LTR37A LTR ERV1 59 426 0 1856 229 37 8 chr11 100094570 100095160 -48688312 - L1MDb LINE L1 -4988 1421 849 3685 214 56 25 chr11 100095335 100095653 -48687819 - L1M4 LINE L1 -1468 4678 4371 2815 102 51 9 chr11 100095653 100096104 -48687368 - L1MB3 LINE L1 -9 6174 5705 3685 214 56 25 chr11 100096104 100096315 -48687157 - L1M4 LINE L1 -1775 4371 4168 1499 189 44 46 chr11 100096315 100096681 -48686791 - MLT1A1 LTR MaLR 0 365 1 3685 214 56 25 chr11 100096681 100097230 -48686242 - L1M4 LINE L1 -1978 4168 3566 213 231 0 0 chr11 100097865 100097904 -48685568 + (CATA)n Simple_repeat Simple_repeat 2 40 0 217 318 307 5 chr11 100098134 100098323 -48685149 - L3b LINE CR1 -27 1556 1311 421 310 96 5 chr11 100098523 100098710 -48684762 + MIR SINE MIR 7 210 -52 643 191 32 0 chr11 100099733 100099859 -48683613 - FLAM_C SINE Alu -3 130 1 2042 140 20 0 chr11 100099950 100100243 -48683229 - AluSx SINE Alu -13 299 1 2843 118 21 6 chr11 100100583 100101058 -48682414 - L1MA5A LINE L1 -3 6294 5813 701 243 111 33 chr11 100101496 100101875 -48681597 + MLT1J1 LTR MaLR 34 450 0 1627 157 27 10 chr11 100103091 100103384 -48680088 + MER1B DNA MER1_type 40 337 -2 186 43 0 0 chr11 100104400 100104423 -48679049 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 503 230 18 36 chr11 100105254 100105419 -48678053 - L2 LINE L2 0 3313 3152 3640 97 16 1 chr11 100106208 100107202 -48676270 + L1PA10 LINE L1 4783 5786 -382 41165 29 21 2 chr11 100107202 100113236 -48670236 + L1HS LINE L1 1 6155 0 329 109 0 0 chr11 100113247 100113302 -48670170 + L1PA10 LINE L1 5769 5823 -345 2949 49 8 3 chr11 100113304 100113670 -48669802 + L1PA10 LINE L1 5790 6157 -11 180 0 0 0 chr11 100113881 100113901 -48669571 + (TG)n Simple_repeat Simple_repeat 2 21 0 347 264 74 39 chr11 100114174 100114405 -48669067 - L1ME LINE L1 -316 5805 5567 27 0 0 0 chr11 100115505 100115532 -48667940 + AT_rich Low_complexity Low_complexity 1 27 0 1362 204 13 48 chr11 100117535 100117849 -48665623 - AluJo SINE Alu -9 303 1 467 272 88 0 chr11 100118304 100118440 -48665032 + MIR3 SINE MIR 30 177 -31 24 53 0 0 chr11 100118832 100118870 -48664602 + AT_rich Low_complexity Low_complexity 1 38 0 3025 205 74 8 chr11 100119773 100120530 -48662942 + L1MC4a LINE L1 7002 7808 0 941 241 83 8 chr11 100120538 100120803 -48662669 - HsTC2a DNA Tc2 -374 370 86 464 292 76 16 chr11 100123939 100124124 -48659348 - MIR SINE MIR -64 198 3 25 31 0 0 chr11 100124629 100124661 -48658811 + AT_rich Low_complexity Low_complexity 1 32 0 27 29 0 0 chr11 100125728 100125762 -48657710 + AT_rich Low_complexity Low_complexity 1 34 0 6704 148 17 37 chr11 100126141 100126980 -48656492 - L1PA13 LINE L1 -2 6161 5307 1961 111 0 0 chr11 100126980 100127242 -48656230 - AluSg SINE Alu -10 300 39 6704 148 17 37 chr11 100127242 100128490 -48654982 - L1PA13 LINE L1 -856 5307 4096 28 29 0 0 chr11 100128902 100128937 -48654535 + AT_rich Low_complexity Low_complexity 1 35 0 1521 212 3 0 chr11 100131419 100131702 -48651770 - AluJb SINE Alu -28 284 1 22 70 0 0 chr11 100131851 100131894 -48651578 + AT_rich Low_complexity Low_complexity 1 43 0 24 0 0 0 chr11 100132764 100132788 -48650684 + AT_rich Low_complexity Low_complexity 1 24 0 2198 79 0 0 chr11 100132873 100133150 -48650322 - AluSq SINE Alu -15 298 22 3992 223 100 24 chr11 100133664 100134338 -48649134 - L1MC3 LINE L1 0 7785 6989 270 0 0 0 chr11 100134338 100134368 -48649104 + (TATG)n Simple_repeat Simple_repeat 2 31 0 3992 223 100 24 chr11 100134368 100134819 -48648653 - L1MC3 LINE L1 -796 6989 6574 502 268 7 29 chr11 100134977 100135115 -48648357 - MIR SINE MIR 0 262 128 237 322 101 24 chr11 100135331 100135539 -48647933 - L2 LINE L2 -767 2547 2324 413 161 31 77 chr11 100136115 100136245 -48647227 + L1MC5 LINE L1 7818 7941 -20 21 0 0 0 chr11 100136445 100136466 -48647006 + AT_rich Low_complexity Low_complexity 1 21 0 193 267 147 13 chr11 100138018 100138093 -48645379 - L2 LINE L2 -665 2649 2565 190 256 61 24 chr11 100138365 100138447 -48645025 - MIR SINE MIR -6 256 172 782 293 40 32 chr11 100139696 100139949 -48643523 - MIR SINE MIR 0 262 8 26 0 0 0 chr11 100140634 100140660 -48642812 + AT_rich Low_complexity Low_complexity 1 26 0 394 300 22 67 chr11 100141007 100141187 -48642285 - MIR SINE MIR -71 191 20 306 309 148 14 chr11 100141982 100142125 -48641347 + MIR SINE MIR 28 191 -63 1106 147 5 11 chr11 100142818 100143009 -48640463 - L1PB1 LINE L1 -3 6148 5959 * 9118 31 2 7 chr11 100143007 100144914 -48638558 - L1PA2 LINE L1 0 6155 4254 31392 69 25 10 chr11 100145037 100149326 -48634146 - L1P LINE L1 -1783 4363 11 429 225 13 53 chr11 100149335 100149486 -48633986 - L1 LINE L1 -1733 4413 4269 1561 159 15 0 chr11 100149489 100149753 -48633719 + L1 LINE L1 3979 4246 -1900 208 309 53 21 chr11 100149939 100150033 -48633439 - L2 LINE L2 -5 3267 3171 320 314 65 24 chr11 100150062 100150186 -48633286 - L2 LINE L2 -11 3261 3133 184 282 0 0 chr11 100150300 100150339 -48633133 - L2 LINE L2 -217 3055 3017 797 200 179 16 chr11 100150546 100150736 -48632736 + MER58A DNA MER1_type 1 221 -3 24 32 0 0 chr11 100150912 100150943 -48632529 + AT_rich Low_complexity Low_complexity 1 31 0 445 360 29 11 chr11 100152201 100152376 -48631096 - MIR SINE MIR -54 208 31 237 213 188 12 chr11 100152962 100153042 -48630430 - MIR SINE MIR -32 230 137 252 274 70 83 chr11 100154001 100154158 -48629314 - L1ME3A LINE L1 -56 6097 5943 758 241 68 16 chr11 100154219 100154468 -48629004 - L1ME3A LINE L1 -215 5938 5677 321 279 107 38 chr11 100154452 100154799 -48628673 - L1ME3A LINE L1 -4108 2202 1832 * 2833 0 0 3 chr11 100154965 100155301 -48628171 + AluYa5 SINE Alu 1 335 0 1002 302 58 45 chr11 100155307 100156264 -48627208 - L1MEd LINE L1 -4725 1585 562 4577 151 37 81 chr11 100156278 100157101 -48626371 - L1MA9 LINE L1 -30 6282 5546 8664 80 7 1 chr11 100157101 100159104 -48624368 + L1PA7 LINE L1 4169 6150 -4 4577 151 37 81 chr11 100159104 100159530 -48623942 - L1MA9 LINE L1 -766 5546 5103 354 359 58 66 chr11 100159533 100160063 -48623409 - L1MEd LINE L1 -5545 574 49 793 275 180 46 chr11 100160134 100160567 -48622905 + MLT1H LTR MaLR 57 547 -2 454 264 50 0 chr11 100161980 100162120 -48621352 + MER103 DNA DNA 20 166 0 594 253 98 44 chr11 100162323 100162548 -48620924 + LTR16A LTR ERVL 25 261 -189 2293 270 40 39 chr11 100162550 100163246 -48620226 + ERVL LTR ERVL 1750 2446 -2550 866 338 48 21 chr11 100163244 100163914 -48619558 + ERVL LTR ERVL 4352 5088 -628 * 905 145 125 16 chr11 100164007 100164057 -48619415 + L1M1 LINE L1 5351 5394 -906 2623 157 30 11 chr11 100164057 100164585 -48618887 - L1MA4 LINE L1 -6 6294 5757 905 145 125 16 chr11 100164585 100164730 -48618742 + L1M1 LINE L1 5394 5567 -733 21 0 0 0 chr11 100164734 100164755 -48618717 + AT_rich Low_complexity Low_complexity 1 21 0 2529 150 27 18 chr11 100164905 100165346 -48618126 + MER65A LTR ERV1 1 445 0 359 243 62 82 chr11 100165352 100165595 -48617877 + L1ME3A LINE L1 5691 5928 -242 6307 121 16 13 chr11 100165674 100167203 -48616269 + L1PB1 LINE L1 4613 6150 -1 27 0 0 0 chr11 100167372 100167399 -48616073 + AT_rich Low_complexity Low_complexity 1 27 0 558 191 109 79 chr11 100169366 100169633 -48613839 + ORSL DNA AcHobo 1 275 0 34 65 0 0 chr11 100170265 100170327 -48613145 + AT_rich Low_complexity Low_complexity 1 62 0 370 320 30 25 chr11 100170631 100171068 -48612404 + L1M4 LINE L1 2699 3137 -3009 704 221 19 38 chr11 100171304 100171462 -48612010 - FRAM SINE Alu -22 154 1 300 293 8 65 chr11 100171466 100171589 -48611883 - MIR SINE MIR -50 212 97 715 124 44 0 chr11 100172627 100172746 -48610726 + LTR10A LTR ERV1 438 547 0 1404 159 40 7 chr11 100172746 100173023 -48610449 + LTR10A-int LTR ERV1 4 289 -6360 2499 111 14 40 chr11 100173191 100173614 -48609858 + LTR10A-int LTR ERV1 610 1021 -5628 * 5842 166 71 32 chr11 100173597 100175215 -48608257 + LTR10A-int LTR ERV1 1234 3317 -3963 4152 245 10 23 chr11 100175195 100176404 -48607068 + LTR10A-int LTR ERV1 2689 3615 -3034 * 1189 76 76 15 chr11 100176391 100176588 -48606884 + LTR19-int LTR ERV1 2573 2781 -2805 * 351 191 167 0 chr11 100176592 100176676 -48606796 - LTR8 LTR ERV1 -438 253 156 4813 73 21 0 chr11 100176689 100177418 -48606054 + BaEV-int LTR ERV1 1833 2576 -4320 * 8504 175 12 28 chr11 100177394 100179421 -48604051 + BaEV-int LTR ERV1 4060 6716 -1069 188 316 0 18 chr11 100180072 100180129 -48603343 - L2 LINE L2 0 3313 3258 30 77 0 0 chr11 100180129 100180194 -48603278 + AT_rich Low_complexity Low_complexity 1 65 0 2492 74 0 3 chr11 100180475 100180785 -48602687 - AluY SINE Alu -2 309 1 598 184 143 0 chr11 100183047 100183243 -48600229 - L1MC4 LINE L1 -184 7858 7635 1038 169 28 0 chr11 100183600 100183778 -48599694 - MER5A DNA MER1_type -6 183 1 854 291 45 33 chr11 100183792 100184341 -48599131 - HAL1b LINE L1 -744 604 49 1146 157 48 100 chr11 100185569 100185853 -48597619 - MLT1C LTR MaLR -3 387 130 2073 107 31 7 chr11 100185853 100186142 -48597330 - AluSq SINE Alu -17 296 1 1146 157 48 100 chr11 100186142 100186266 -48597206 - MLT1C LTR MaLR -260 130 1 1338 151 0 20 chr11 100187040 100187292 -48596180 + L1MA4 LINE L1 6031 6277 -23 638 121 0 0 chr11 100187524 100187615 -48595857 - AluSg/x SINE Alu -16 294 204 1062 259 115 36 chr11 100188754 100189265 -48594207 - L2 LINE L2 -4 3309 2744 1143 176 77 39 chr11 100189265 100189577 -48593895 - MER33 DNA MER1_type 0 324 1 1062 259 115 36 chr11 100189577 100189641 -48593831 - L2 LINE L2 -569 2744 2686 238 234 75 43 chr11 100189635 100189729 -48593743 + MIR SINE MIR 111 207 -55 * 193 286 0 16 chr11 100189773 100189836 -48593636 + MIR SINE MIR 187 248 -14 424 278 178 19 chr11 100190567 100190937 -48592535 + L1ME4a LINE L1 5574 6002 -119 34 0 0 0 chr11 100190999 100191033 -48592439 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr11 100191057 100191079 -48592393 + AT_rich Low_complexity Low_complexity 1 22 0 336 185 193 42 chr11 100191366 100191485 -48591987 - L1ME4a LINE L1 0 6121 5985 1051 219 26 0 chr11 100191519 100191747 -48591725 + L2 LINE L2 2173 2406 -908 1460 230 3 3 chr11 100191779 100192083 -48591389 - MLT1F1 LTR MaLR -263 304 1 1480 227 146 29 chr11 100192085 100192896 -48590576 + L2 LINE L2 2403 3312 -1 316 239 145 37 chr11 100192974 100193161 -48590311 - L1ME4a LINE L1 -296 5825 5660 2423 37 0 14 chr11 100193161 100193457 -48590015 - AluY SINE Alu -19 292 1 316 239 145 37 chr11 100193457 100193553 -48589919 - L1ME4a LINE L1 -461 5660 5488 572 147 62 39 chr11 100193612 100193741 -48589731 + MIR SINE MIR 131 262 0 201 178 0 0 chr11 100194308 100194353 -48589119 + (CA)n Simple_repeat Simple_repeat 2 46 0 313 241 93 131 chr11 100194579 100194816 -48588656 + L1M2 LINE L1 756 983 -5866 430 299 119 20 chr11 100195259 100195460 -48588012 - MIR SINE MIR -33 229 9 25 0 0 0 chr11 100195535 100195560 -48587912 + AT_rich Low_complexity Low_complexity 1 25 0 215 132 0 53 chr11 100196659 100196697 -48586775 - L2 LINE L2 -32 3240 3205 * 273 265 118 39 chr11 100196675 100196777 -48586695 + L2 LINE L2 3154 3263 -9 520 347 41 47 chr11 100196828 100197148 -48586324 - L2 LINE L2 -1 3271 2954 329 257 124 0 chr11 100197252 100197365 -48586107 + MIR SINE MIR 122 248 -14 225 213 49 0 chr11 100197390 100197451 -48586021 - MLT1K LTR MaLR -15 573 510 267 297 11 11 chr11 100197927 100198018 -48585454 - L3b LINE CR1 -227 1356 1266 2722 247 57 41 chr11 100198205 100199565 -48583907 + HAL1 LINE L1 924 2392 -115 4218 153 24 3 chr11 100200501 100201241 -48582231 + Tigger2 DNA MER2_type 2 757 -1961 929 164 102 45 chr11 100201291 100201471 -48582001 + Tigger2 DNA MER2_type 2461 2660 -58 2266 100 3 3 chr11 100201471 100201772 -48581700 - AluSx SINE Alu -11 301 1 929 164 102 45 chr11 100201772 100201835 -48581637 + Tigger2 DNA MER2_type 2660 2718 0 711 325 22 11 chr11 100201885 100202159 -48581313 + LTR33 LTR ERVL 11 287 -234 402 106 61 0 chr11 100202257 100202323 -48581149 - MLT1A1 LTR MaLR 0 365 296 2431 93 3 0 chr11 100202329 100202639 -48580833 - AluSp SINE Alu -2 311 1 1416 98 199 20 chr11 100202639 100202912 -48580560 - AluSx SINE Alu 0 312 1 1399 198 51 13 chr11 100202922 100203248 -48580224 - MLT1A1 LTR MaLR -13 492 15 264 175 138 38 chr11 100203258 100203338 -48580134 + LTR33 LTR ERVL 424 511 -10 334 222 179 0 chr11 100203373 100203478 -48579994 - MIR SINE MIR -41 167 45 1759 194 0 0 chr11 100203915 100204209 -48579263 - AluJo SINE Alu -18 294 1 233 284 59 10 chr11 100204614 100204716 -48578756 - MIR SINE MIR -38 224 118 4303 227 63 28 chr11 100204725 100206319 -48577153 + L1M3e LINE L1 4 1541 -5565 4618 181 50 16 chr11 100206319 100207187 -48576285 - MER54A LTR ERVL -2 899 3 4303 227 63 28 chr11 100207187 100208742 -48574730 + L1M3e LINE L1 1541 4159 -2947 3075 154 86 28 chr11 100208753 100209430 -48574042 + L1MA9 LINE L1 5595 6310 -2 2271 101 13 0 chr11 100209819 100210117 -48573355 + AluY SINE Alu 1 302 -9 546 259 81 25 chr11 100211436 100211633 -48571839 - MIR SINE MIR -15 247 40 1076 128 64 0 chr11 100211638 100211794 -48571678 - AluSg/x SINE Alu -13 299 134 2740 19 0 7 chr11 100211794 100212102 -48571370 - AluYa5 SINE Alu -5 306 1 189 0 0 0 chr11 100212245 100212266 -48571206 + (T)n Simple_repeat Simple_repeat 1 21 0 606 339 101 13 chr11 100214740 100215135 -48568337 - L2 LINE L2 -557 2757 2328 2146 115 14 3 chr11 100215384 100215680 -48567792 + AluSx SINE Alu 1 299 -13 26 50 0 0 chr11 100217438 100217478 -48565994 + AT_rich Low_complexity Low_complexity 1 40 0 581 243 0 0 chr11 100219111 100219222 -48564250 - MER81 DNA DNA -3 111 1 312 245 331 0 chr11 100219396 100219535 -48563937 - MIR SINE MIR -1 261 77 362 237 125 49 chr11 100219768 100220000 -48563472 + L1M3e LINE L1 4988 5237 -1869 246 176 0 0 chr11 100220828 100220879 -48562593 + (TA)n Simple_repeat Simple_repeat 2 52 0 235 182 0 91 chr11 100220892 100220991 -48562481 - L1MC4 LINE L1 -1339 6703 6614 282 239 43 0 chr11 100221006 100221098 -48562374 - L1MC4 LINE L1 -1333 6709 6614 261 119 0 0 chr11 100221101 100221143 -48562329 + (TA)n Simple_repeat Simple_repeat 1 42 0 216 302 0 0 chr11 100222309 100222362 -48561110 + MIR SINE MIR 207 259 -3 207 0 0 0 chr11 100222905 100222928 -48560544 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 195 292 0 0 chr11 100223000 100223048 -48560424 - MIR3 SINE MIR -52 156 109 1890 151 0 19 chr11 100223507 100223818 -48559654 - AluJb SINE Alu -7 305 1 2083 133 0 10 chr11 100223829 100224131 -48559341 - AluSx SINE Alu -13 299 1 191 345 115 5 chr11 100224210 100224410 -48559062 + L2 LINE L2 1891 2112 -1202 187 268 225 22 chr11 100224433 100224571 -48558901 + L2 LINE L2 2224 2389 -925 502 250 4 4 chr11 100224713 100224858 -48558614 - L1MC4 LINE L1 0 8042 7795 436 253 0 0 chr11 100224909 100225004 -48558468 + L1MC4a LINE L1 6630 6724 -1084 3132 254 129 52 chr11 100225026 100225303 -48558169 - L1MC4 LINE L1 -126 7682 7428 2192 111 16 0 chr11 100225303 100225610 -48557862 - AluSp SINE Alu -1 312 1 3132 254 129 52 chr11 100225610 100226184 -48557288 - L1MC4 LINE L1 -380 7428 6900 2271 109 0 0 chr11 100226184 100226495 -48556977 - AluSx SINE Alu -1 311 1 3132 254 129 52 chr11 100226495 100227071 -48556401 - L1MC4 LINE L1 -908 6900 6273 2307 65 48 0 chr11 100227071 100227363 -48556109 + AluY SINE Alu 1 306 -5 3132 254 129 52 chr11 100227363 100227780 -48555692 - L1MC4 LINE L1 -1535 6273 5890 866 173 0 0 chr11 100227826 100227959 -48555513 + FLAM_C SINE Alu 1 133 0 1051 198 39 0 chr11 100228052 100228234 -48555238 + MER5A DNA MER1_type 1 189 0 834 260 35 20 chr11 100228268 100228522 -48554950 - MIR SINE MIR 0 262 5 270 0 0 0 chr11 100228807 100228837 -48554635 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 2109 147 166 0 chr11 100230000 100230367 -48553105 - MSTA LTR MaLR 0 428 1 412 260 29 28 chr11 100230405 100230581 -48552891 + L2 LINE L2 3138 3305 -8 411 302 34 39 chr11 100230798 100230977 -48552495 - MIR SINE MIR -50 212 35 219 269 15 30 chr11 100231762 100231829 -48551643 - L2 LINE L2 -6 3307 3242 23 0 0 0 chr11 100231832 100231855 -48551617 + AT_rich Low_complexity Low_complexity 1 23 0 632 270 17 104 chr11 100231989 100232278 -48551194 + L2 LINE L2 3004 3267 -5 250 286 0 0 chr11 100233508 100233571 -48549901 - L2 LINE L2 0 3313 3251 458 248 39 0 chr11 100234507 100234636 -48548836 - MIR SINE MIR -120 142 9 1816 226 55 25 chr11 100234963 100235450 -48548022 - L1ME3A LINE L1 -35 6135 5634 424 285 46 23 chr11 100236029 100236159 -48547313 + L2 LINE L2 3181 3313 0 4864 234 34 17 chr11 100236708 100237880 -48545592 + LTR10A-int LTR ERV1 5458 6649 0 2942 128 67 8 chr11 100237918 100238396 -48545076 + LTR10A LTR ERV1 1 506 -103 346 229 156 0 chr11 100238798 100238894 -48544578 - MIR SINE MIR -144 118 8 532 291 134 27 chr11 100239061 100239284 -48544188 - MIR SINE MIR 0 262 16 296 61 61 0 chr11 100239609 100239658 -48543814 + GA-rich Low_complexity Low_complexity 2 53 0 609 137 0 0 chr11 100239739 100239834 -48543638 + MER53 DNA DNA 1 95 -94 267 259 62 12 chr11 100239968 100240049 -48543423 + L2 LINE L2 3169 3253 -19 1990 177 39 117 chr11 100240197 100240248 -48543224 - MLT2B1 LTR ERVL 0 520 467 414 0 0 0 chr11 100240248 100240294 -48543178 + (CA)n Simple_repeat Simple_repeat 2 47 0 1990 177 39 117 chr11 100240294 100240347 -48543125 - MLT2B1 LTR ERVL -53 467 411 1732 177 20 0 chr11 100240347 100240646 -48542826 + AluJb SINE Alu 1 305 -7 1990 177 39 117 chr11 100240646 100241104 -48542368 - MLT2B1 LTR ERVL -109 411 1 343 366 61 0 chr11 100241796 100241960 -48541512 + MER5A DNA MER1_type 13 186 -3 253 228 22 43 chr11 100241993 100242085 -48541387 - MIR SINE MIR -57 205 116 1450 193 193 15 chr11 100242100 100242504 -48540968 - MLT1D LTR MaLR -29 476 1 181 298 35 0 chr11 100242509 100242566 -48540906 - MIR SINE MIR -156 106 48 485 194 230 0 chr11 100242970 100243109 -48540363 + MER5A DNA MER1_type 9 179 -10 250 267 171 48 chr11 100243673 100243778 -48539694 - L2 LINE L2 0 3272 3155 306 0 0 0 chr11 100243783 100243817 -48539655 + (CA)n Simple_repeat Simple_repeat 2 35 0 279 225 56 0 chr11 100244067 100244138 -48539334 - MER116 DNA Mariner -5 75 1 397 252 19 57 chr11 100245320 100245479 -48537993 + MIR SINE MIR 110 262 0 227 186 23 0 chr11 100247192 100247235 -48536237 - MIR SINE MIR -152 110 67 335 155 0 0 chr11 100247277 100247335 -48536137 - MLT2B1 LTR ERVL 0 520 463 352 93 19 0 chr11 100247381 100247435 -48536037 - MLT2B2 LTR ERVL -460 55 1 21 57 0 0 chr11 100247823 100247858 -48535614 + AT_rich Low_complexity Low_complexity 1 35 0 248 288 30 15 chr11 100247860 100247926 -48535546 + L2 LINE L2 3139 3205 -67 414 202 43 0 chr11 100248028 100248122 -48535350 + L1ME4a LINE L1 5950 6047 -74 294 229 0 0 chr11 100248182 100248252 -48535220 + CT-rich Low_complexity Low_complexity 4 73 0 191 250 0 0 chr11 100248360 100248404 -48535068 - MIR SINE MIR -4 258 215 378 259 48 90 chr11 100248477 100248643 -48534829 - L2 LINE L2 -173 3099 2941 183 80 0 0 chr11 100249681 100249706 -48533766 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 353 298 29 10 chr11 100249706 100249810 -48533662 - L2 LINE L2 -13 3300 3195 414 331 66 6 chr11 100249967 100250133 -48533339 + MIR SINE MIR 17 192 -70 416 287 116 81 chr11 100250139 100250474 -48532998 + L2 LINE L2 2926 3272 0 736 235 65 108 chr11 100250550 100250758 -48532714 - MLT1A1 LTR MaLR -2 378 162 1295 155 22 4 chr11 100250758 100250990 -48532482 - L1MA4A LINE L1 -2 6301 6066 736 235 65 108 chr11 100250990 100251006 -48532466 - MLT1A1 LTR MaLR -218 162 147 1718 138 8 8 chr11 100251006 100251266 -48532206 + AluJb SINE Alu 24 283 -29 333 68 0 0 chr11 100251266 100251310 -48532162 + (CA)n Simple_repeat Simple_repeat 2 45 0 736 235 65 108 chr11 100251310 100251486 -48531986 - MLT1A1 LTR MaLR -231 149 1 498 277 54 99 chr11 100251560 100251986 -48531486 + MLT1I LTR MaLR 1 407 -2 232 279 26 91 chr11 100252469 100252623 -48530849 - L1ME3A LINE L1 -9 6161 6018 1001 209 42 68 chr11 100252735 100253042 -48530430 - L1ME1 LINE L1 -5 6161 5863 383 279 116 83 chr11 100303352 100303835 -48479637 - L1M2 LINE L1 -5689 1160 662 1991 98 7 21 chr11 100303904 100304191 -48479281 + AluY SINE Alu 26 308 -3 25 31 0 0 chr11 100304211 100304243 -48479229 + AT_rich Low_complexity Low_complexity 1 32 0 2370 100 0 0 chr11 100304292 100304593 -48478879 + AluSx SINE Alu 1 301 -11 1555 188 33 0 chr11 100304690 100304961 -48478511 - AluJo SINE Alu -32 280 1 2557 21 0 0 chr11 100304961 100305275 -48478197 - AluYa5 SINE Alu 0 314 1 15213 169 38 24 chr11 100306274 100308994 -48474478 - L1PB1 LINE L1 -23 6844 4162 189 0 0 0 chr11 100308994 100309015 -48474457 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1667 160 22 0 chr11 100309017 100309292 -48474180 - AluSx SINE Alu -31 281 1 15213 169 38 24 chr11 100309292 100311865 -48471607 - L1PB1 LINE L1 -2705 4162 1538 871 140 0 0 chr11 100311853 100311989 -48471483 - L1PB1 LINE L1 -6727 136 1 * 3581 168 19 36 chr11 100312999 100313108 -48470364 - L1P LINE L1 -2605 3541 3432 2316 97 0 3 chr11 100313108 100313416 -48470056 - AluY SINE Alu -4 307 1 3581 168 19 36 chr11 100313416 100314056 -48469416 - L1P LINE L1 -2714 3432 2805 553 230 9 0 chr11 100314122 100314235 -48469237 - MER94 DNA DNA -15 119 6 289 232 0 74 chr11 100314275 100314370 -48469102 + L3 LINE CR1 670 757 -820 198 216 0 0 chr11 100314374 100314411 -48469061 + L2 LINE L2 3017 3053 -219 724 303 51 76 chr11 100314591 100315024 -48468448 + L3 LINE CR1 756 1177 -400 316 288 0 0 chr11 100315038 100315118 -48468354 - L2 LINE L2 -5 3308 3229 2344 162 8 23 chr11 100315153 100315618 -48467854 - MER89 LTR ERV1 0 559 3 301 283 150 46 chr11 100315667 100315907 -48467565 + L3 LINE CR1 1234 1498 -79 185 273 0 0 chr11 100315911 100315955 -48467517 - MER5A DNA MER1_type -7 182 139 * 234 289 0 26 chr11 100315923 100315999 -48467473 + MER5A DNA MER1_type 32 105 -84 2132 108 0 20 chr11 100316045 100316341 -48467131 + AluSx SINE Alu 1 290 -22 418 218 35 0 chr11 100316342 100316484 -48466988 + (TA)n Simple_repeat Simple_repeat 1 147 0 247 222 11 100 chr11 100316487 100316577 -48466895 + L3 LINE CR1 1494 1575 -2 207 180 33 49 chr11 100316614 100316675 -48466797 - L2 LINE L2 0 3313 3254 464 269 8 8 chr11 100316735 100316854 -48466618 - L2 LINE L2 0 3313 3195 417 242 269 7 chr11 100317379 100317528 -48465944 + MIR3 SINE MIR 18 205 -3 2905 77 3 8 chr11 100317959 100318312 -48465160 - THE1A LTR MaLR -4 351 1 12750 87 5 0 chr11 100318312 100319884 -48463588 - THE1A-int LTR MaLR 0 1580 1 2870 93 3 0 chr11 100319884 100320238 -48463234 - THE1A LTR MaLR 0 355 1 21 57 0 0 chr11 100320526 100320561 -48462911 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr11 100320583 100320604 -48462868 + AT_rich Low_complexity Low_complexity 1 21 0 487 248 8 0 chr11 100323826 100323947 -48459525 - MER103 DNA DNA -44 122 1 1981 124 3 0 chr11 100323953 100324257 -48459215 - AluSx SINE Alu 0 305 1 187 234 26 13 chr11 100324393 100324470 -48459002 + GA-rich Low_complexity Low_complexity 3 80 0 10096 191 99 28 chr11 100324777 100327316 -48456156 + L1M4 LINE L1 16 2726 -3814 2827 163 27 4 chr11 100327314 100328235 -48455237 + L1M4 LINE L1 5261 6203 -375 * 244 59 0 0 chr11 100328234 100328268 -48455204 + L1MB7 LINE L1 6132 6165 -19 * 1728 174 97 117 chr11 100328324 100328881 -48454591 + L1MD2 LINE L1 5689 6234 -8 30 89 0 0 chr11 100328986 100329065 -48454407 + AT_rich Low_complexity Low_complexity 1 79 0 297 82 20 0 chr11 100330173 100330222 -48453250 + L1MA3 LINE L1 6256 6305 0 222 290 108 70 chr11 100331283 100331469 -48452003 + MIR SINE MIR 2 194 -68 326 325 45 0 chr11 100331470 100331627 -48451845 + L1MC5 LINE L1 7717 7880 -81 1809 156 11 63 chr11 100333611 100333724 -48449748 - MLT1A1 LTR MaLR 0 365 248 1941 137 97 35 chr11 100333724 100334027 -48449445 - MSTA LTR MaLR 0 428 92 2325 104 0 3 chr11 100334027 100334336 -48449136 + AluSg SINE Alu 1 308 -2 1941 137 97 35 chr11 100334336 100334434 -48449038 - MSTA LTR MaLR -336 92 2 1809 156 11 63 chr11 100334434 100334699 -48448773 - MLT1A1 LTR MaLR -117 248 7 374 307 12 1 chr11 100335530 100335706 -48447766 - L1ME LINE L1 -732 5432 5255 3458 166 88 16 chr11 100337516 100338291 -48445181 - Charlie5 DNA MER1_type 0 2624 1794 3097 147 14 0 chr11 100338930 100339440 -48444032 + L1MB7 LINE L1 5661 6177 -7 383 252 114 32 chr11 100339662 100339785 -48443687 + MIR3 SINE MIR 30 162 -46 522 344 54 26 chr11 100339922 100340312 -48443160 + L2 LINE L2 1223 1623 -1691 346 216 276 9 chr11 100340618 100340734 -48442738 + L2 LINE L2 3167 3313 0 2155 119 10 0 chr11 100340740 100341042 -48442430 + AluSg SINE Alu 1 305 -5 29 0 0 0 chr11 100341467 100341496 -48441976 + AT_rich Low_complexity Low_complexity 1 29 0 1499 148 38 27 chr11 100341596 100341859 -48441613 + AluJb SINE Alu 29 294 -18 309 284 71 66 chr11 100343581 100343792 -48439680 + L1ME4a LINE L1 5817 6028 -93 387 213 237 53 chr11 100345186 100345393 -48438079 + MIR SINE MIR 5 249 -13 * 957 236 13 9 chr11 100345349 100345574 -48437898 - MIR SINE MIR -21 241 16 319 305 42 34 chr11 100345662 100345780 -48437692 - L2 LINE L2 -2 3270 3152 196 306 90 81 chr11 100346090 100346201 -48437271 - L2 LINE L2 -8 3264 3153 2378 81 0 0 chr11 100346600 100346898 -48436574 + AluSg SINE Alu 1 298 -12 2404 86 0 0 chr11 100347226 100347527 -48435945 + AluSg SINE Alu 1 301 -9 326 225 87 14 chr11 100347538 100347676 -48435796 + L1MC5 LINE L1 7370 7517 -444 294 242 0 0 chr11 100347763 100347825 -48435647 + MIR3 SINE MIR 132 193 -15 258 286 175 16 chr11 100348140 100348266 -48435206 + MIR SINE MIR 67 212 -50 682 244 11 45 chr11 100348266 100348532 -48434940 + L1MC5 LINE L1 7493 7749 -212 846 96 0 57 chr11 100348709 100348886 -48434586 + (TCC)n Simple_repeat Simple_repeat 1 167 0 966 200 0 40 chr11 100348886 100349086 -48434386 - AluJb SINE Alu -7 305 114 686 131 103 86 chr11 100349116 100349291 -48434181 - AluSg/x SINE Alu 0 312 135 371 325 45 13 chr11 100349312 100349469 -48434003 + L2 LINE L2 2999 3160 -112 434 293 11 64 chr11 100349814 100350002 -48433470 + MIR SINE MIR 1 178 -84 295 177 115 21 chr11 100351346 100351442 -48432030 + L1ME4a LINE L1 5995 6099 -22 204 237 0 0 chr11 100352191 100352229 -48431243 - MIR SINE MIR -5 257 220 218 322 140 62 chr11 100352354 100352646 -48430826 + L2 LINE L2 2948 3262 -10 400 274 26 18 chr11 100352912 100353025 -48430447 + MIR3 SINE MIR 93 206 -2 21 0 0 0 chr11 100353723 100353744 -48429728 + AT_rich Low_complexity Low_complexity 1 21 0 461 275 118 60 chr11 100353832 100354514 -48428958 - L1ME4a LINE L1 -91 6030 5296 2239 104 0 7 chr11 100354524 100354821 -48428651 - AluSx SINE Alu -13 299 5 256 282 98 15 chr11 100355098 100355343 -48428129 - L1ME4a LINE L1 -1481 4665 4407 33 0 0 0 chr11 100355361 100355394 -48428078 + AT_rich Low_complexity Low_complexity 1 33 0 321 265 161 54 chr11 100355396 100355962 -48427510 - L1ME4a LINE L1 -1719 4427 3786 1902 162 43 97 chr11 100355962 100356455 -48427017 - MLT1C LTR MaLR -1 466 1 321 265 161 54 chr11 100356455 100356515 -48426957 - L1ME4a LINE L1 -2360 3786 3734 528 114 51 0 chr11 100356527 100356606 -48426866 + L1MA4 LINE L1 2 84 -5244 7656 150 16 35 chr11 100356606 100358954 -48424518 + L1MA4 LINE L1 4179 6481 -1 673 304 118 36 chr11 100358980 100359533 -48423939 - L1ME4a LINE L1 -2460 3686 3089 22 0 0 0 chr11 100359652 100359674 -48423798 + AT_rich Low_complexity Low_complexity 1 22 0 237 346 111 0 chr11 100361853 100362006 -48421466 - L3b LINE CR1 -105 1478 1309 586 334 84 30 chr11 100362014 100362612 -48420860 + L1ME4a LINE L1 4705 5334 -812 250 278 56 58 chr11 100362618 100362962 -48420510 + L1ME4a LINE L1 5299 5416 -705 21 0 0 0 chr11 100363051 100363072 -48420400 + AT_rich Low_complexity Low_complexity 1 21 0 980 154 259 0 chr11 100363072 100363273 -48420199 + Tigger3(Golem) DNA MER2_type 2776 3028 -1 326 234 19 28 chr11 100363352 100363459 -48420013 + L1ME4a LINE L1 5963 6068 -53 268 218 73 0 chr11 100364582 100364637 -48418835 + MIR3 SINE MIR 102 160 -48 408 256 94 8 chr11 100364637 100364754 -48418718 + MER5C DNA MER1_type 1 127 -197 1065 213 143 37 chr11 100364806 100365262 -48418210 - MLT1D LTR MaLR 0 505 2 500 271 129 12 chr11 100366098 100366353 -48417119 + L1ME4a LINE L1 5561 5845 -276 514 253 210 0 chr11 100366412 100366574 -48416898 - MIR SINE MIR -46 216 21 590 206 71 27 chr11 100366581 100366620 -48416852 + MLT1D LTR MaLR 1 37 -468 2071 115 56 34 chr11 100366620 100366976 -48416496 - THE1B LTR MaLR 0 364 1 590 206 71 27 chr11 100366976 100367120 -48416352 + MLT1D LTR MaLR 37 192 -313 186 71 0 0 chr11 100367123 100367151 -48416321 + (CA)n Simple_repeat Simple_repeat 2 29 0 875 181 117 28 chr11 100367151 100367392 -48416080 + MLT1D LTR MaLR 217 505 0 368 234 124 7 chr11 100367479 100367624 -48415848 + L1ME4a LINE L1 5957 6118 -3 190 307 57 23 chr11 100368869 100368957 -48414515 + L2 LINE L2 3219 3309 -4 247 196 0 39 chr11 100368974 100369025 -48414447 + MIR3 SINE MIR 115 163 -45 225 241 128 53 chr11 100369101 100369234 -48414238 - MER103 DNA DNA -20 146 4 306 0 0 0 chr11 100369351 100369385 -48414087 + (ATG)n Simple_repeat Simple_repeat 3 36 0 180 349 152 15 chr11 100369393 100369525 -48413947 - L2 LINE L2 -16 3256 3107 243 326 0 23 chr11 100369529 100369615 -48413857 + (CATA)n Simple_repeat Simple_repeat 2 85 0 6149 165 78 32 chr11 100369753 100369929 -48413543 + Charlie1a DNA MER1_type 41 207 -2554 2340 71 0 10 chr11 100369929 100370226 -48413246 - AluY SINE Alu -14 297 4 6149 165 78 32 chr11 100370226 100370611 -48412861 + Charlie1a DNA MER1_type 207 573 -2188 1929 123 32 0 chr11 100370611 100370896 -48412576 + AluSx SINE Alu 1 294 -18 6149 165 78 32 chr11 100370896 100371685 -48411787 + Charlie1a DNA MER1_type 573 1455 0 1744 194 3 3 chr11 100372496 100372800 -48410672 + AluJb SINE Alu 1 304 -8 4486 99 3 13 chr11 100372853 100373466 -48410006 + L1PB1 LINE L1 5542 6148 -3 334 269 157 0 chr11 100373544 100373678 -48409794 + MIR SINE MIR 96 250 -12 2020 129 0 14 chr11 100374312 100374607 -48408865 + AluSx SINE Alu 9 299 -13 4352 155 88 40 chr11 100374869 100375694 -48407778 + MER6 DNA MER2_type 1 865 0 3382 155 51 34 chr11 100375696 100376288 -48407184 + MER7C DNA MER2_type 1 602 0 239 267 271 27 chr11 100376400 100376625 -48406847 - L2 LINE L2 -368 2946 2667 603 231 20 20 chr11 100376626 100376777 -48406695 + MIR SINE MIR 72 221 -41 459 266 25 25 chr11 100376811 100376969 -48406503 + MER112 DNA MER1_type 90 247 -13 225 296 126 15 chr11 100377008 100377143 -48406329 - L2 LINE L2 -790 2524 2375 287 232 37 104 chr11 100377425 100377589 -48405883 + L2 LINE L2 3158 3310 -3 399 283 151 47 chr11 100378232 100378444 -48405028 - MIR SINE MIR 0 262 29 198 282 81 40 chr11 100378824 100378948 -48404524 - MIR SINE MIR -48 214 86 30 45 0 0 chr11 100379580 100379624 -48403848 + AT_rich Low_complexity Low_complexity 1 44 0 2363 93 7 0 chr11 100379966 100380267 -48403205 + AluSx SINE Alu 6 308 -4 291 185 0 31 chr11 100380791 100380856 -48402616 - MIR SINE MIR -5 257 195 504 286 114 22 chr11 100381072 100381299 -48402173 - MIR SINE MIR -1 261 14 2989 178 25 24 chr11 100381389 100381978 -48401494 - L1MB5 LINE L1 0 6174 5585 249 306 83 25 chr11 100383602 100383723 -48399749 - MIR3 SINE MIR -40 168 41 555 259 112 15 chr11 100383799 100384004 -48399468 - MIR SINE MIR -37 225 1 536 323 60 17 chr11 100384823 100385058 -48398414 - MIR SINE MIR -10 252 8 291 268 163 8 chr11 100385404 100385527 -48397945 + MER112 DNA MER1_type 119 260 0 197 283 11 54 chr11 100385565 100385657 -48397815 - L3b LINE CR1 -195 1388 1301 870 155 10 88 chr11 100386587 100386781 -48396691 + AluJo SINE Alu 118 296 -16 1833 158 0 4 chr11 100386828 100387106 -48396366 + AluSx SINE Alu 2 278 -34 328 266 119 7 chr11 100387600 100387743 -48395729 - MIR SINE MIR -57 205 47 518 273 60 16 chr11 100388637 100388820 -48394652 + MIR SINE MIR 20 210 -52 219 250 0 75 chr11 100390195 100390275 -48393197 - MIR SINE MIR -72 190 117 430 318 8 0 chr11 100390740 100390866 -48392606 + MIR3 SINE MIR 45 171 -37 318 156 42 115 chr11 100390866 100390918 -48392554 + L1MB3 LINE L1 6095 6138 -45 1783 169 10 17 chr11 100390918 100391213 -48392259 - AluJb SINE Alu -19 293 1 318 156 42 115 chr11 100391213 100391256 -48392216 + L1MB3 LINE L1 6138 6183 0 585 218 73 32 chr11 100391267 100391391 -48392081 - FLAM_A SINE Alu -3 130 2 251 260 42 21 chr11 100391419 100391515 -48391957 + MIR SINE MIR 164 261 -1 327 239 51 44 chr11 100392125 100392275 -48391197 - MIR3 SINE MIR -23 185 32 2350 143 13 3 chr11 100394125 100394497 -48388975 - Tigger1 DNA MER2_type -934 1484 1109 391 193 61 0 chr11 100394889 100394990 -48388482 + MLT1C LTR MaLR 6 119 -348 1667 245 15 90 chr11 100394990 100395581 -48387891 + MLT2B3 LTR ERVL 1 547 -7 470 144 39 58 chr11 100395599 100395703 -48387769 + L1MB2 LINE L1 6070 6171 0 698 82 10 10 chr11 100395709 100395807 -48387665 + MER4A LTR ERV1 1 98 -566 1813 134 11 25 chr11 100395807 100396157 -48387315 + MER4A LTR ERV1 261 664 0 382 73 206 0 chr11 100396157 100396225 -48387247 + MLT1C LTR MaLR 120 201 -266 744 174 83 0 chr11 100396226 100396358 -48387114 + MLT2B3 LTR ERVL 2 144 -410 * 1439 128 0 88 chr11 100396351 100396625 -48386847 + MLT2B3 LTR ERVL 305 554 0 571 211 17 2 chr11 100396625 100396842 -48386630 + MLT1C LTR MaLR 197 465 -2 361 223 11 53 chr11 100396865 100396959 -48386513 + L2 LINE L2 3177 3266 -47 22 56 0 0 chr11 100397638 100397674 -48385798 + AT_rich Low_complexity Low_complexity 1 36 0 2273 112 0 13 chr11 100397991 100398324 -48385148 - AluSx SINE Alu 0 312 1 533 204 68 8 chr11 100398593 100398725 -48384747 + MER103 DNA DNA 17 156 -10 200 304 130 0 chr11 100398876 100398968 -48384504 + MIR SINE MIR 89 192 -70 2511 53 0 3 chr11 100402409 100402708 -48380764 - AluY SINE Alu -13 298 1 209 188 188 29 chr11 100403075 100403144 -48380328 + MIR SINE MIR 119 198 -64 718 202 168 17 chr11 100403146 100403319 -48380153 - MIR SINE MIR 0 262 64 1973 108 22 7 chr11 100403396 100403701 -48379771 + AluY SINE Alu 1 309 0 200 285 139 66 chr11 100404487 100404624 -48378848 + MER5B DNA MER1_type 1 147 -31 2124 223 37 50 chr11 100404648 100405248 -48378224 - L1ME3A LINE L1 -8 6162 5571 20177 34 0 0 chr11 100405293 100408355 -48375117 + L1PA3 LINE L1 3090 6154 -1 702 221 110 75 chr11 100408355 100408663 -48374809 - LTR47B LTR ERVL -121 322 4 234 376 11 11 chr11 100408683 100408776 -48374696 + MIR SINE MIR 36 128 -134 245 26 0 51 chr11 100409012 100409051 -48374421 + (TAAAA)n Simple_repeat Simple_repeat 4 40 0 17193 27 33 1 chr11 100409051 100411705 -48371767 + L1PA4 LINE L1 3469 6152 -3 260 297 105 29 chr11 100411732 100411941 -48371531 - L1MB8 LINE L1 -44 6134 5910 712 276 58 8 chr11 100411955 100412239 -48371233 - L1ME3A LINE L1 -636 5528 5234 570 261 167 8 chr11 100412608 100412853 -48370619 + L2 LINE L2 3013 3296 -17 281 327 142 13 chr11 100413087 100413313 -48370159 + L2 LINE L2 1871 2125 -1189 218 226 19 0 chr11 100413326 100413379 -48370093 - MIR SINE MIR 0 262 209 2078 172 53 30 chr11 100413421 100413852 -48369620 + L1MB5 LINE L1 5725 6165 -9 1679 303 72 52 chr11 100413884 100413913 -48369559 - L2 LINE L2 -136 3177 3150 2333 109 0 0 chr11 100413913 100414224 -48369248 + AluSx SINE Alu 1 311 -1 1679 303 72 52 chr11 100414224 100415248 -48368224 - L2 LINE L2 -163 3150 2112 845 293 85 68 chr11 100415501 100416019 -48367453 - L2 LINE L2 -2011 1303 777 492 325 90 8 chr11 100416030 100416264 -48367208 + L2 LINE L2 2127 2379 -935 1431 191 37 37 chr11 100416339 100416617 -48366855 + AluJo SINE Alu 1 281 -31 216 0 0 0 chr11 100416617 100416641 -48366831 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 1431 191 37 37 chr11 100416641 100416660 -48366812 + AluJo SINE Alu 280 298 -14 198 368 53 0 chr11 100416660 100416755 -48366717 + L2 LINE L2 2363 2462 -852 1263 218 58 65 chr11 100416757 100417202 -48366270 - LTR16A1 LTR ERVL -2 455 14 264 248 115 35 chr11 100417251 100417364 -48366108 - HERV16 LTR ERVL -30 4966 4845 * 2332 345 37 8 chr11 100417348 100418468 -48365004 - ERVL LTR ERVL -161 5324 4181 510 351 42 23 chr11 100418520 100418779 -48364693 - ERVL LTR ERVL -2150 3335 3072 2616 37 0 0 chr11 100418812 100419107 -48364365 + AluY SINE Alu 3 297 -14 1179 296 52 29 chr11 100419162 100419745 -48363727 - ERVL LTR ERVL -2050 2971 2406 22 0 0 0 chr11 100419981 100420003 -48363469 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr11 100421249 100421272 -48362200 + AT_rich Low_complexity Low_complexity 1 23 0 225 273 0 0 chr11 100421679 100421745 -48361727 + (TA)n Simple_repeat Simple_repeat 2 67 0 1062 192 47 9 chr11 100421982 100422196 -48361276 - MLT1A1 LTR MaLR 0 365 144 37766 87 16 12 chr11 100422196 100428313 -48355159 - L1PA6 LINE L1 -2 6152 11 720 201 7 26 chr11 100428328 100428441 -48355031 - MLT1A1 LTR MaLR -214 151 40 2028 143 78 0 chr11 100428441 100428763 -48354709 - MER7A DNA MER2_type 0 346 2 720 201 7 26 chr11 100428763 100428803 -48354669 - MLT1A1 LTR MaLR -325 40 1 221 394 58 10 chr11 100428873 100428977 -48354495 - MIR SINE MIR -84 124 16 573 277 14 0 chr11 100430075 100430216 -48353256 + MIR SINE MIR 117 259 -3 2274 212 73 13 chr11 100430339 100430886 -48352586 - L1MB8 LINE L1 -4 6174 5595 7439 206 49 44 chr11 100430896 100432946 -48350526 - L1MB8 LINE L1 -710 5464 3407 2073 134 0 0 chr11 100433687 100433979 -48349493 + AluSc SINE Alu 1 292 -17 1754 187 89 6 chr11 100434040 100434377 -48349095 - MLT1A1 LTR MaLR 0 365 1 255 214 0 0 chr11 100434847 100434917 -48348555 + (TA)n Simple_repeat Simple_repeat 1 70 0 212 309 15 15 chr11 100435301 100435369 -48348103 - L2 LINE L2 -2 3270 3203 317 370 56 65 chr11 100435626 100435842 -48347630 - L2 LINE L2 -10 3262 3049 694 195 156 13 chr11 100435962 100436116 -48347356 + MER45A DNA AcHobo 3 178 0 2231 218 110 18 chr11 100436318 100436475 -48346997 + L1MD1 LINE L1 57 198 -6342 2882 177 9 7 chr11 100436475 100436939 -48346533 + MLT1C LTR MaLR 3 467 0 2231 218 110 18 chr11 100436939 100437390 -48346082 + L1MD1 LINE L1 198 721 -5819 7218 62 2 19 chr11 100437402 100438622 -48344850 + L1PA7 LINE L1 4939 6154 0 5930 231 86 38 chr11 100438814 100439845 -48343627 + L1MD1 LINE L1 3373 4353 -2187 2177 72 4 0 chr11 100439845 100440110 -48343362 + AluSc SINE Alu 23 288 -21 5930 231 86 38 chr11 100440110 100441179 -48342293 + L1MD1 LINE L1 4353 5573 -967 39039 83 12 6 chr11 100441194 100447307 -48336165 + L1PA6 LINE L1 11 6148 -6 4756 181 34 16 chr11 100447355 100448379 -48335093 + L1MD1 LINE L1 5569 6613 -23 406 213 57 6 chr11 100448379 100448467 -48335005 - MER58 DNA MER1_type -289 97 14 2025 287 108 21 chr11 100449030 100449796 -48333676 - HAL1 LINE L1 -1564 943 111 1084 249 77 69 chr11 100449798 100450321 -48333151 + LTR1B LTR ERV1 1 527 -299 647 261 80 28 chr11 100450302 100450551 -48332921 + LTR28 LTR ERV1 759 1020 0 * 226 239 254 0 chr11 100450576 100450643 -48332829 - HAL1 LINE L1 -2423 84 1 844 129 0 8 chr11 100450717 100450841 -48332631 - AluSg/x SINE Alu -18 292 170 228 204 19 0 chr11 100451812 100451866 -48331606 - L1M LINE L1 -773 5391 5337 189 321 62 37 chr11 100451905 100451986 -48331486 - L2 LINE L2 -58 3214 3132 2246 101 10 3 chr11 100451995 100452292 -48331180 - AluSg SINE Alu -11 299 1 3707 128 99 12 chr11 100453198 100453837 -48329635 - L1PA16 LINE L1 0 6166 5473 5647 119 77 29 chr11 100453839 100454806 -48328666 - L1MA8 LINE L1 -19 6272 5262 1582 95 99 20 chr11 100454806 100455059 -48328413 - L1MA1 LINE L1 -4 6298 6026 5647 119 77 29 chr11 100455059 100455305 -48328167 - L1MA8 LINE L1 -1029 5262 5029 468 229 28 62 chr11 100455742 100455886 -48327586 + L2 LINE L2 3169 3307 -6 274 215 177 0 chr11 100455921 100456000 -48327472 - HAL1b LINE L1 -847 501 409 416 250 57 0 chr11 100456016 100456140 -48327332 - L1M4 LINE L1 -4832 1710 1596 317 304 102 30 chr11 100456163 100456429 -48327043 - L1M4 LINE L1 -3439 2707 2423 2246 72 0 84 chr11 100456448 100456780 -48326692 + AluY SINE Alu 1 304 -7 184 187 173 13 chr11 100458490 100458565 -48324907 - MIR SINE MIR -100 108 22 307 316 129 24 chr11 100459257 100459466 -48324006 - MIR SINE MIR -12 250 20 319 122 0 20 chr11 100459778 100459827 -48323645 + MIR SINE MIR 20 67 -195 514 197 124 15 chr11 100460013 100460150 -48323322 + MIR SINE MIR 55 206 -56 197 244 39 51 chr11 100460188 100460266 -48323206 - MIR SINE MIR -28 234 158 223 219 169 29 chr11 100460386 100460505 -48322967 - MIR SINE MIR -68 140 16 306 0 0 0 chr11 100461846 100461880 -48321592 + (CA)n Simple_repeat Simple_repeat 1 34 0 247 275 169 37 chr11 100462926 100463115 -48320357 - L2 LINE L2 -3 3269 3056 367 273 117 57 chr11 100463229 100463563 -48319909 - LTR67 LTR ERVL -6 551 198 391 297 90 7 chr11 100464260 100464405 -48319067 + MIR SINE MIR 28 184 -78 281 252 27 72 chr11 100464668 100464779 -48318693 - MIR SINE MIR -85 177 72 434 230 264 44 chr11 100465399 100465782 -48317690 - L2 LINE L2 -875 2439 1973 344 292 108 8 chr11 100467525 100467645 -48315827 + MIR SINE MIR 13 144 -118 1529 170 42 16 chr11 100468011 100468323 -48315149 + MER33 DNA MER1_type 1 320 -4 207 313 16 16 chr11 100468776 100468840 -48314632 + L2 LINE L2 3246 3309 -4 269 272 74 0 chr11 100468947 100469028 -48314444 - MIR SINE MIR -69 193 107 323 286 108 13 chr11 100469305 100469447 -48314025 - MIR SINE MIR -62 146 1 186 270 130 20 chr11 100470814 100470914 -48312558 - MIR SINE MIR -50 212 102 * 289 284 45 25 chr11 100470886 100471032 -48312440 + MIR SINE MIR 19 163 -82 * 1050 269 283 24 chr11 100471030 100472795 -48310677 - L2 LINE L2 -6 3307 1057 322 274 11 0 chr11 100473607 100473702 -48309770 + MER112 DNA MER1_type 147 242 -18 283 313 56 82 chr11 100473817 100474085 -48309387 + L3 LINE CR1 1306 1566 -11 539 285 77 30 chr11 100474540 100474775 -48308697 - MIR SINE MIR -15 247 2 229 294 59 0 chr11 100475377 100475445 -48308027 - L2 LINE L2 0 3272 3201 853 277 117 19 chr11 100475472 100475883 -48307589 - L2 LINE L2 0 3313 2863 369 260 93 109 chr11 100477894 100478337 -48305135 + L2 LINE L2 2672 3091 -181 703 286 88 62 chr11 100478721 100479221 -48304251 - L2 LINE L2 -492 2822 2310 236 192 0 58 chr11 100481526 100481578 -48301894 - L2 LINE L2 -1 3312 3264 199 78 16 78 chr11 100533237 100533301 -48250171 + (CACAA)n Simple_repeat Simple_repeat 5 64 0 21 43 0 0 chr11 100533494 100533517 -48249955 + GC_rich Low_complexity Low_complexity 1 23 0 186 125 0 0 chr11 100533764 100533788 -48249684 + (G)n Simple_repeat Simple_repeat 1 24 0 180 0 0 0 chr11 100534155 100534175 -48249297 + (C)n Simple_repeat Simple_repeat 1 20 0 31 0 0 0 chr11 100534293 100534324 -48249148 + GC_rich Low_complexity Low_complexity 1 31 0 233 326 0 0 chr11 100534369 100534418 -48249054 + C-rich Low_complexity Low_complexity 1 49 0 22 77 0 0 chr11 100534466 100534492 -48248980 + GC_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr11 100534531 100534552 -48248920 + AT_rich Low_complexity Low_complexity 1 21 0 24 100 0 0 chr11 100534606 100534636 -48248836 + GC_rich Low_complexity Low_complexity 1 30 0 23 74 0 0 chr11 100534924 100534951 -48248521 + AT_rich Low_complexity Low_complexity 1 27 0 21 80 0 0 chr11 100535352 100535377 -48248095 + GC_rich Low_complexity Low_complexity 1 25 0 23 167 0 0 chr11 100535404 100535446 -48248026 + GC_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr11 100536070 100536091 -48247381 + GC_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr11 100536131 100536160 -48247312 + GC_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr11 100536207 100536233 -48247239 + GC_rich Low_complexity Low_complexity 1 26 0 189 0 0 0 chr11 100537907 100537928 -48245544 + (C)n Simple_repeat Simple_repeat 1 21 0 21 111 0 0 chr11 100538002 100538029 -48245443 + AT_rich Low_complexity Low_complexity 1 27 0 28 33 0 0 chr11 100538065 100538095 -48245377 + GC_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr11 100538868 100538891 -48244581 + GC_rich Low_complexity Low_complexity 1 23 0 219 214 36 45 chr11 100539330 100539442 -48244030 + (CACAC)n Simple_repeat Simple_repeat 1 111 0 276 50 100 0 chr11 100539442 100539502 -48243970 + (CACCC)n Simple_repeat Simple_repeat 3 68 0 24 71 0 0 chr11 100540595 100540623 -48242849 + GC_rich Low_complexity Low_complexity 1 28 0 31 30 0 0 chr11 100541128 100541161 -48242311 + GC_rich Low_complexity Low_complexity 1 33 0 30 83 0 0 chr11 100541213 100541249 -48242223 + GC_rich Low_complexity Low_complexity 1 36 0 30 0 0 0 chr11 100541310 100541340 -48242132 + GC_rich Low_complexity Low_complexity 1 30 0 11426 172 17 11 chr11 100541825 100544133 -48239339 - L1PA13 LINE L1 -2464 4333 1999 198 0 0 0 chr11 100544355 100544377 -48239095 + (CAT)n Simple_repeat Simple_repeat 3 24 0 1206 241 71 55 chr11 100545926 100546408 -48237064 + MER39 LTR ERV1 1 683 0 8397 9 2 1 chr11 100546598 100547787 -48235685 + L1PA2 LINE L1 4962 6151 -4 411 206 25 100 chr11 100547788 100547859 -48235613 - L1MA10 LINE L1 -11 6323 6253 1917 222 88 61 chr11 100547859 100548548 -48234924 - L1ME1 LINE L1 -58 6108 5401 1119 52 15 0 chr11 100548552 100548688 -48234784 - AluY SINE Alu -169 142 5 1070 190 75 61 chr11 100548691 100549102 -48234370 - pTR5 LTR ERV1 -1279 1159 743 416 181 29 38 chr11 100549102 100549207 -48234265 - L1ME1 LINE L1 -763 5403 5300 21 0 0 0 chr11 100550293 100550314 -48233158 + AT_rich Low_complexity Low_complexity 1 21 0 31 58 0 0 chr11 100550363 100550415 -48233057 + AT_rich Low_complexity Low_complexity 1 52 0 23 33 0 0 chr11 100550486 100550516 -48232956 + AT_rich Low_complexity Low_complexity 1 30 0 1160 302 103 18 chr11 100551390 100551887 -48231585 + L2 LINE L2 2197 2735 -579 418 261 368 25 chr11 100551925 100552208 -48231264 + L2 LINE L2 2934 3313 0 1130 253 124 45 chr11 100552474 100552834 -48230638 + MLT1C LTR MaLR 6 407 -60 2244 85 14 3 chr11 100552834 100553129 -48230343 - AluSg SINE Alu -12 298 1 1130 253 124 45 chr11 100553129 100553195 -48230277 + MLT1C LTR MaLR 407 466 -1 561 260 139 74 chr11 100553544 100554281 -48229191 + HAL1 LINE L1 1438 2332 -175 743 240 48 39 chr11 100554389 100554597 -48228875 + MER58A DNA MER1_type 1 210 -14 23 0 0 0 chr11 100554695 100554718 -48228754 + AT_rich Low_complexity Low_complexity 1 23 0 24 67 0 0 chr11 100556361 100556406 -48227066 + AT_rich Low_complexity Low_complexity 1 45 0 235 284 49 25 chr11 100556685 100556766 -48226706 - MLT1J2 LTR MaLR -7 443 361 * 620 299 148 24 chr11 100556748 100557079 -48226393 - MLT1J1 LTR MaLR -74 372 1 266 212 71 20 chr11 100558273 100558372 -48225100 - MLT1J1 LTR MaLR 0 446 343 538 244 109 57 chr11 100558442 100558635 -48224837 - MLT1J1 LTR MaLR -241 205 3 1237 206 61 87 chr11 100558678 100558988 -48224484 + AluJo SINE Alu 1 302 0 799 184 17 46 chr11 100559064 100559238 -48224234 - LTR40a LTR ERVL -4 515 347 1932 204 125 30 chr11 100559241 100559298 -48224174 - MER77 LTR ERV1 0 605 555 2333 82 3 20 chr11 100559298 100559602 -48223870 + AluSp SINE Alu 1 299 -14 1932 204 125 30 chr11 100559602 100560040 -48223432 - MER77 LTR ERV1 -50 555 63 1299 216 76 76 chr11 100560063 100560456 -48223016 - MER77 LTR ERV1 -212 393 1 624 251 30 18 chr11 100560550 100560717 -48222755 - LTR40c LTR ERVL -296 169 1 858 306 77 24 chr11 100560835 100561289 -48222183 + L1MCc LINE L1 32 509 -5914 2267 109 0 0 chr11 100562372 100562676 -48220796 + AluSx SINE Alu 1 304 -8 1657 152 65 4 chr11 100562737 100563014 -48220458 + AluSq SINE Alu 1 294 -19 2247 242 60 88 chr11 100563268 100564347 -48219125 + L1MC4a LINE L1 5254 6302 -1506 1640 198 73 11 chr11 100564363 100564731 -48218741 - L1MB7 LINE L1 -19 6165 5775 2737 118 35 13 chr11 100565045 100565443 -48218029 + MER1A DNA MER1_type 123 529 0 203 237 13 26 chr11 100565946 100566022 -48217450 + T-rich Low_complexity Low_complexity 3 77 0 616 319 86 62 chr11 100566989 100567754 -48215718 - L2 LINE L2 -67 3205 2430 25 0 0 0 chr11 100567885 100567910 -48215562 + AT_rich Low_complexity Low_complexity 1 25 0 397 237 118 33 chr11 100568276 100568428 -48215044 + MLT1H LTR MaLR 383 547 -2 580 301 37 4 chr11 100569812 100570058 -48213414 + L1M4 LINE L1 2960 3213 -2933 1213 132 0 0 chr11 100570512 100570679 -48212793 - AluJb SINE Alu -23 289 123 467 262 113 19 chr11 100570911 100571167 -48212305 + L1ME4a LINE L1 5840 6119 -2 1215 87 52 12 chr11 100571322 100571495 -48211977 - L1PA13 LINE L1 0 6163 5984 2372 66 0 10 chr11 100571718 100572019 -48211453 - AluY SINE Alu -13 298 1 291 238 124 52 chr11 100572304 100572475 -48210997 + L1P LINE L1 4919 5102 -1044 330 323 82 20 chr11 100572599 100572893 -48210579 + L1MC/D LINE L1 5256 5567 -675 967 103 30 3 chr11 100573477 100573676 -48209796 + L1PA13 LINE L1 5919 6163 0 1700 153 3 37 chr11 100573745 100574045 -48209427 - AluJb SINE Alu -11 301 12 1575 155 38 0 chr11 100574674 100574938 -48208534 - L1PA16 LINE L1 -7 6159 5886 250 303 11 0 chr11 100575606 100575695 -48207777 + MER113 DNA MER1_type? 1 90 -431 21 71 0 0 chr11 100575677 100575719 -48207753 + AT_rich Low_complexity Low_complexity 1 42 0 * 1944 142 0 33 chr11 100577132 100577435 -48206037 + AluSq SINE Alu 1 293 -20 864 39 0 0 chr11 100578115 100578217 -48205255 - AluY SINE Alu -5 306 205 21 36 0 0 chr11 100579987 100580015 -48203457 + AT_rich Low_complexity Low_complexity 1 28 0 1872 107 12 83 chr11 100581086 100581280 -48202192 - AluSg SINE Alu -6 304 141 225 0 0 0 chr11 100581280 100581305 -48202167 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1872 107 12 83 chr11 100581305 100581437 -48202035 - AluSg SINE Alu -169 141 1 287 306 36 51 chr11 100581524 100581720 -48201752 - MLT1K LTR MaLR -394 194 2 202 224 0 20 chr11 100582831 100582880 -48200592 + GA-rich Low_complexity Low_complexity 2 49 0 304 309 170 55 chr11 100583352 100583682 -48199790 + L1M2 LINE L1 779 1146 -5703 468 248 23 16 chr11 100585497 100585626 -48197846 - L2 LINE L2 0 3313 3184 314 323 94 21 chr11 100586338 100586530 -48196942 - L3b LINE CR1 -111 1472 1267 224 162 0 81 chr11 100588495 100588569 -48194903 + T-rich Low_complexity Low_complexity 1 68 0 191 299 91 26 chr11 100588669 100588746 -48194726 - MIR SINE MIR -105 103 22 185 274 192 62 chr11 100589071 100589217 -48194255 - L2 LINE L2 -17 3296 3132 183 80 0 0 chr11 100590104 100590129 -48193343 + (CATA)n Simple_repeat Simple_repeat 2 26 0 21 0 0 0 chr11 100590692 100590713 -48192759 + AT_rich Low_complexity Low_complexity 1 21 0 539 232 172 11 chr11 100591425 100591791 -48191681 + L1ME LINE L1 5149 5576 -588 267 280 27 0 chr11 100591839 100591914 -48191558 + MER21B LTR ERV1 12 88 -775 26 0 0 0 chr11 100591933 100591959 -48191513 + AT_rich Low_complexity Low_complexity 1 26 0 284 192 26 39 chr11 100591970 100592048 -48191424 + L1ME LINE L1 5599 5675 -495 3972 217 33 99 chr11 100592056 100593705 -48189767 + L1M2 LINE L1 460 2000 -5489 4177 228 94 35 chr11 100593710 100596324 -48187148 + L1M2 LINE L1 2178 4761 -2804 1195 199 12 9 chr11 100596305 100596646 -48186826 + L1M2 LINE L1 6199 6709 -856 * 321 70 0 0 chr11 100596651 100596694 -48186778 + AluSp SINE Alu 131 173 -130 804 171 0 0 chr11 100596744 100596884 -48186588 + AluJb SINE Alu 173 312 0 2065 144 15 20 chr11 100596884 100597287 -48186185 + L1M2 LINE L1 6706 7106 -604 1768 179 10 7 chr11 100597437 100597745 -48185727 - AluJb SINE Alu -3 309 1 255 333 42 10 chr11 100598544 100598640 -48184832 + MIR SINE MIR 49 147 -115 2861 16 0 0 chr11 100598946 100599260 -48184212 + AluYb8 SINE Alu 1 314 -4 297 20 39 20 chr11 100599378 100599429 -48184043 + (TAAAAA)n Simple_repeat Simple_repeat 2 53 0 2017 267 63 17 chr11 100600144 100601679 -48181793 + L1MC/D LINE L1 1503 3278 -3148 434 265 170 9 chr11 100603632 100603862 -48179610 + L1MC/D LINE L1 5723 5989 -2099 886 222 126 0 chr11 100603999 100604206 -48179266 + Tigger7 DNA MER2_type 1 233 -317 297 0 0 0 chr11 100604216 100604249 -48179223 + (TAA)n Simple_repeat Simple_repeat 2 34 0 474 163 0 12 chr11 100604252 100604332 -48179140 + Tigger7 DNA MER2_type 2408 2486 -1 1736 175 3 20 chr11 100604617 100604920 -48178552 - AluJb SINE Alu -14 298 1 2408 70 0 49 chr11 100605379 100605706 -48177766 + AluY SINE Alu 1 311 0 9177 79 10 2 chr11 100606249 100608278 -48175194 + L1PA7 LINE L1 4115 6154 0 279 300 55 36 chr11 100608839 100608949 -48174523 - L2 LINE L2 -181 3091 2980 246 292 15 80 chr11 100609305 100609442 -48174030 + L2 LINE L2 2911 3038 -234 541 299 35 0 chr11 100609791 100609935 -48173537 - L2 LINE L2 -1446 1868 1720 408 245 135 25 chr11 100610030 100610193 -48173279 - MIR SINE MIR -10 252 72 459 0 0 0 chr11 100610730 100610781 -48172691 + (TG)n Simple_repeat Simple_repeat 2 52 0 254 323 32 0 chr11 100611191 100611284 -48172188 - MIR SINE MIR -16 246 151 891 179 0 0 chr11 100611302 100611447 -48172025 - FRAM SINE Alu -22 154 10 237 259 17 0 chr11 100611465 100611523 -48171949 - MIR SINE MIR -64 144 86 698 249 124 33 chr11 100611554 100611640 -48171832 - MER45C DNA AcHobo -628 953 876 2205 80 39 0 chr11 100611640 100611926 -48171546 + AluSp SINE Alu 1 297 -16 698 249 124 33 chr11 100611926 100612080 -48171392 - MER45C DNA AcHobo -705 876 691 633 223 104 30 chr11 100612108 100612310 -48171162 - MER45C DNA AcHobo -686 267 51 2763 3 0 0 chr11 100613160 100613457 -48170015 - AluYa5 SINE Alu -14 297 1 1156 200 74 77 chr11 100613926 100614316 -48169156 - MLT1B LTR MaLR -1 389 1 627 222 45 64 chr11 100614462 100614728 -48168744 + L1M4 LINE L1 4807 5067 -1079 * 9127 158 25 4 chr11 100614727 100617614 -48165858 + L1MA3 LINE L1 3349 6295 -10 8255 102 83 14 chr11 100617716 100619191 -48164281 + MER4A-int LTR ERV1 4094 5671 -927 1452 143 12 4 chr11 100619187 100619438 -48164034 + MER4A-int LTR ERV1 6344 6596 -2 * 568 143 0 10 chr11 100619447 100619545 -48163927 + MER4A LTR ERV1 2 98 -566 1537 136 171 76 chr11 100619545 100619914 -48163558 + MER4A LTR ERV1 261 664 0 282 354 71 0 chr11 100620001 100620128 -48163344 + L2 LINE L2 3137 3272 0 254 320 7 33 chr11 100620298 100620448 -48163024 - MLT1K LTR MaLR -123 465 320 1936 143 0 10 chr11 100620720 100621013 -48162459 - AluJo SINE Alu -22 290 1 414 306 38 29 chr11 100621016 100621306 -48162166 - MLT1L LTR MaLR -158 457 101 231 114 0 0 chr11 100621584 100621619 -48161853 + (A)n Simple_repeat Simple_repeat 1 35 0 2387 67 0 0 chr11 100621619 100621902 -48161570 - AluY SINE Alu -20 291 9 1141 120 87 21 chr11 100621903 100622144 -48161328 - MSTA LTR MaLR -171 257 1 3343 184 19 15 chr11 100622401 100623069 -48160403 + LTR51 LTR ERV1 1 671 0 1770 177 3 7 chr11 100623094 100623388 -48160084 - AluJb SINE Alu -17 295 3 3752 208 22 34 chr11 100623477 100623781 -48159691 + MER21B LTR ERV1 15 321 -542 1613 153 15 4 chr11 100623781 100624049 -48159423 + AluJb SINE Alu 27 297 -15 3752 208 22 34 chr11 100624049 100624589 -48158883 + MER21B LTR ERV1 321 849 -14 808 151 8 0 chr11 100624594 100624720 -48158752 + AluSq/x SINE Alu 6 132 -180 280 215 118 0 chr11 100624893 100624986 -48158486 - Charlie7 DNA MER1_type -2507 105 2 507 147 60 35 chr11 100625108 100625224 -48158248 + LTR52 LTR ERVL 1 119 -302 678 136 127 0 chr11 100625224 100625334 -48158138 + FLAM_C SINE Alu 2 125 -18 1159 165 108 37 chr11 100625341 100625565 -48157907 + LTR52 LTR ERVL 102 354 -67 1801 159 0 36 chr11 100625565 100625874 -48157598 - AluJo SINE Alu -14 298 1 1159 165 108 37 chr11 100625874 100625946 -48157526 + LTR52 LTR ERVL 354 419 -2 245 160 310 10 chr11 100625946 100626044 -48157428 + L2 LINE L2 3068 3195 -118 232 267 167 0 chr11 100626084 100626174 -48157298 - L2 LINE L2 -26 3287 3183 186 133 0 0 chr11 100626175 100626205 -48157267 + L2 LINE L2 3278 3307 -6 21 36 0 0 chr11 100626254 100626282 -48157190 + AT_rich Low_complexity Low_complexity 1 28 0 683 149 18 0 chr11 100626730 100626844 -48156628 - FLAM_C SINE Alu -25 118 3 819 146 0 44 chr11 100627412 100627549 -48155923 - FLAM_C SINE Alu -2 131 1 208 122 0 49 chr11 100627581 100627622 -48155850 + (TTAA)n Simple_repeat Simple_repeat 4 42 0 618 267 105 10 chr11 100628073 100628369 -48155103 - L1MC4a LINE L1 -1870 5938 5615 2218 111 0 0 chr11 100628384 100628681 -48154791 + AluSx SINE Alu 6 302 -10 424 211 138 9 chr11 100628813 100628922 -48154550 - FLAM_A SINE Alu -7 126 4 2246 117 7 0 chr11 100629093 100629401 -48154071 + AluSq SINE Alu 1 310 -3 34 24 0 0 chr11 100629644 100629685 -48153787 + AT_rich Low_complexity Low_complexity 1 41 0 5134 64 24 1 chr11 100629685 100630340 -48153132 - L1PA7 LINE L1 -4 6150 5481 328 125 0 0 chr11 100630340 100630388 -48153084 - AluJ/FRAM SINE Alu -25 277 230 * 3005 192 55 50 chr11 100630387 100631205 -48152267 - MER52A LTR ERV1 -933 822 1 648 128 0 0 chr11 100631205 100631299 -48152173 - FLAM_C SINE Alu -38 105 12 22 35 0 0 chr11 100631396 100631425 -48152047 + AT_rich Low_complexity Low_complexity 1 29 0 1932 159 3 0 chr11 100631509 100631804 -48151668 + AluSx SINE Alu 1 296 -16 1559 182 10 40 chr11 100632832 100633134 -48150338 - AluJo SINE Alu -14 298 6 2236 127 0 3 chr11 100633144 100633451 -48150021 - AluSx SINE Alu -6 306 1 1703 136 0 47 chr11 100633560 100633839 -48149633 - AluSx SINE Alu -8 304 39 2497 68 0 16 chr11 100634296 100634604 -48148868 + AluSc SINE Alu 1 303 -6 21 0 0 0 chr11 100636018 100636039 -48147433 + AT_rich Low_complexity Low_complexity 1 21 0 2069 100 21 7 chr11 100636066 100636345 -48147127 + AluSx SINE Alu 11 293 -19 1777 46 46 37 chr11 100636346 100636587 -48146885 + AluY SINE Alu 60 302 -9 237 275 22 11 chr11 100636745 100636836 -48146636 + GA-rich Low_complexity Low_complexity 4 95 0 532 171 0 0 chr11 100636964 100637046 -48146426 - AluSg/x SINE Alu -158 152 71 2201 114 0 43 chr11 100637189 100637514 -48145958 + AluSx SINE Alu 1 311 -1 2465 80 0 16 chr11 100637631 100637943 -48145529 + AluSc SINE Alu 1 307 -2 180 302 0 16 chr11 100638022 100638085 -48145387 - MIR3 SINE MIR -6 202 141 312 254 201 8 chr11 100638250 100638384 -48145088 + MIR SINE MIR 29 188 -74 361 266 18 0 chr11 100639326 100639435 -48144037 + L1ME3 LINE L1 5835 5945 -217 759 227 13 0 chr11 100639446 100639600 -48143872 + L1ME3 LINE L1 6000 6155 -7 756 150 23 30 chr11 100639665 100639798 -48143674 - FLAM_C SINE Alu -1 132 1 1612 159 6 78 chr11 100639805 100640126 -48143346 - AluJb SINE Alu -6 306 9 2345 97 0 0 chr11 100640171 100640470 -48143002 - AluSg SINE Alu -11 299 1 2017 172 0 0 chr11 100640472 100640780 -48142692 - AluSx SINE Alu -4 308 1 760 181 0 0 chr11 100640887 100641020 -48142452 + FLAM_C SINE Alu 1 133 0 23 33 0 0 chr11 100641656 100641686 -48141786 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr11 100642180 100642209 -48141263 + AT_rich Low_complexity Low_complexity 1 29 0 720 150 58 8 chr11 100642212 100642332 -48141140 - FLAM_C SINE Alu -17 126 1 2197 101 3 3 chr11 100643348 100643635 -48139837 - AluSx SINE Alu -25 287 1 3629 189 62 48 chr11 100643682 100644638 -48138834 + LTR5 LTR ERVK 1 969 0 452 140 112 0 chr11 100644686 100644793 -48138679 - L1MC4 LINE L1 0 8042 7924 446 248 8 8 chr11 100645844 100645965 -48137507 + LTR28 LTR ERV1 900 1020 0 329 169 0 0 chr11 100645965 100646024 -48137448 + Alu SINE Alu 243 301 -1 2257 107 0 7 chr11 100646034 100646344 -48137128 + AluSx SINE Alu 1 308 -4 245 167 37 19 chr11 100646344 100646398 -48137074 + MER45B DNA AcHobo 719 773 -267 540 200 0 0 chr11 100646400 100646490 -48136982 + MER45B DNA AcHobo 951 1040 0 2158 65 0 4 chr11 100646785 100647047 -48136425 + AluSp SINE Alu 36 296 -17 270 179 77 0 chr11 100648694 100648772 -48134700 + Looper DNA T2_type 230 313 -1245 1021 284 14 25 chr11 100649029 100649314 -48134158 - LTR48 LTR ERV1 -504 283 2 2227 131 0 0 chr11 100649374 100649680 -48133792 - AluSx SINE Alu -6 306 1 2226 127 19 68 chr11 100649707 100649815 -48133657 + MER57A LTR ERV1 1 113 -290 4312 87 17 18 chr11 100649815 100650416 -48133056 + MER4A LTR ERV1 1 600 0 2226 127 19 68 chr11 100650416 100650731 -48132741 + MER57A LTR ERV1 113 403 0 1759 167 0 7 chr11 100650786 100651067 -48132405 + AluJb SINE Alu 1 279 -33 1982 165 58 39 chr11 100651067 100651605 -48131867 + MLT2A2 LTR ERVL 2 551 -3 481 167 0 0 chr11 100651801 100651879 -48131593 + AluJb SINE Alu 2 79 -233 6632 175 125 80 chr11 100651880 100653539 -48129933 - MER52A LTR ERV1 0 1755 21 1366 179 8 0 chr11 100654157 100654391 -48129081 + AluJb SINE Alu 76 311 -1 302 286 43 43 chr11 100654432 100654593 -48128879 + L1MDa LINE L1 175 335 -6205 2476 93 3 0 chr11 100654626 100654938 -48128534 + AluSp SINE Alu 1 313 0 330 148 0 19 chr11 100655002 100655056 -48128416 + FLAM_A SINE Alu 15 67 -66 239 308 77 8 chr11 100655353 100655483 -48127989 - L1M3de LINE L1 -4674 1979 1841 1664 187 11 7 chr11 100655483 100655767 -48127705 + MLT1A1 LTR MaLR 29 313 -52 207 88 0 0 chr11 100655769 100655803 -48127669 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 1838 150 13 27 chr11 100655808 100656108 -48127364 + AluJb SINE Alu 1 296 -16 1899 136 3 40 chr11 100656138 100656440 -48127032 - AluJb SINE Alu -21 291 1 810 177 0 34 chr11 100656440 100656587 -48126885 - AluJo SINE Alu -169 143 2 1052 169 165 34 chr11 100657090 100657357 -48126115 - AluJb SINE Alu 0 302 1 2217 111 0 13 chr11 100657549 100657855 -48125617 - AluSx SINE Alu -10 302 1 261 0 0 0 chr11 100657875 100657904 -48125568 + (TA)n Simple_repeat Simple_repeat 2 30 0 8375 43 0 1 chr11 100657907 100659676 -48123796 - L1PA5 LINE L1 0 6154 4377 1182 108 0 6 chr11 100659676 100659833 -48123639 - AluSg SINE Alu -154 156 1 257 320 29 0 chr11 100659838 100659941 -48123531 + PABL_B-int LTR ERV1 2433 2538 -2109 2032 129 10 13 chr11 100660237 100660540 -48122932 + AluSx SINE Alu 1 302 -10 320 336 15 15 chr11 100660846 100660977 -48122495 + PABL_B-int LTR ERV1 5633 5763 -1359 2022 144 0 0 chr11 100661114 100661439 -48122033 + AluSx SINE Alu 1 325 0 2223 122 3 0 chr11 100661661 100661964 -48121508 - AluSx SINE Alu -8 304 1 767 300 72 41 chr11 100662111 100662571 -48120901 + PABL_B-int LTR ERV1 6231 6704 -418 26 50 0 0 chr11 100662756 100662796 -48120676 + AT_rich Low_complexity Low_complexity 1 40 0 840 189 18 12 chr11 100663182 100663346 -48120126 + FAM SINE Alu 1 165 -10 888 151 7 0 chr11 100663595 100663741 -48119731 - AluJb SINE Alu -21 291 145 253 179 0 0 chr11 100664825 100664881 -48118591 + MIR SINE MIR 63 118 -144 319 271 161 16 chr11 100664939 100665131 -48118341 - L2 LINE L2 -471 2843 2624 313 271 55 116 chr11 100665234 100665466 -48118006 + L1MC4a LINE L1 4883 5087 -1059 1654 171 11 0 chr11 100665466 100665740 -48117732 + AluJo SINE Alu 1 277 -35 313 271 55 116 chr11 100665740 100665869 -48117603 + L1MC4a LINE L1 5087 5222 -924 554 300 97 40 chr11 100665908 100666197 -48117275 + L1MC4a LINE L1 5267 5538 -2270 2113 134 0 6 chr11 100666197 100666510 -48116962 - AluSx SINE Alu -1 311 1 554 300 97 40 chr11 100666510 100666826 -48116646 + L1MC4a LINE L1 5538 5907 -1901 2512 85 0 0 chr11 100666873 100667179 -48116293 + AluY SINE Alu 1 306 -5 26 30 0 0 chr11 100667921 100667954 -48115518 + AT_rich Low_complexity Low_complexity 1 33 0 2345 97 0 0 chr11 100668141 100668441 -48115031 + AluY SINE Alu 1 300 -11 331 241 37 56 chr11 100668533 100668641 -48114831 + MIR SINE MIR 29 134 -128 315 268 104 49 chr11 100668955 100669138 -48114334 - MIR3 SINE MIR 0 208 16 1377 210 50 4 chr11 100669428 100669709 -48113763 + AluJo SINE Alu 1 294 -18 233 206 159 0 chr11 100669827 100669890 -48113582 - L2 LINE L2 0 3313 3241 1953 151 7 3 chr11 100670564 100670862 -48112610 + AluSx SINE Alu 1 299 -13 1901 128 48 17 chr11 100671162 100671451 -48112021 + AluJb SINE Alu 1 298 -14 1779 176 13 10 chr11 100672399 100672705 -48110767 + AluJo SINE Alu 1 307 -5 180 0 0 0 chr11 100672854 100672874 -48110598 + (T)n Simple_repeat Simple_repeat 1 20 0 599 319 21 0 chr11 100673753 100673941 -48109531 - MIR SINE MIR -16 246 55 2874 300 105 26 chr11 100674425 100674597 -48108875 + L2 LINE L2 1525 1682 -1631 2021 133 7 17 chr11 100674597 100674890 -48108582 + AluSx SINE Alu 1 290 -22 2874 300 105 26 chr11 100674890 100676369 -48107103 + L2 LINE L2 1682 3308 -5 251 254 0 0 chr11 100676396 100676455 -48107017 - L1ME LINE L1 -459 5662 5604 200 333 0 0 chr11 100677642 100677693 -48105779 + MER5A DNA MER1_type 7 57 -132 448 193 267 40 chr11 100678101 100678251 -48105221 - MER5A DNA MER1_type -2 187 4 583 251 41 20 chr11 100678263 100678444 -48105028 - MIR SINE MIR -62 146 13 241 344 21 21 chr11 100678679 100678775 -48104697 + MER5A DNA MER1_type 38 133 -56 436 158 0 53 chr11 100678777 100678872 -48104600 - FLAM_A SINE Alu -7 135 46 267 235 0 59 chr11 100678893 100678961 -48104511 + MER5B DNA MER1_type 115 178 0 488 258 157 19 chr11 100679043 100679202 -48104270 + MER5A DNA MER1_type 9 189 0 192 235 186 69 chr11 100679202 100679303 -48104169 - MIR SINE MIR -55 207 95 456 344 21 21 chr11 100679363 100679552 -48103920 - MER5A DNA MER1_type 0 189 1 189 0 0 0 chr11 100679648 100679669 -48103803 + (T)n Simple_repeat Simple_repeat 1 21 0 213 219 0 0 chr11 100680126 100680167 -48103305 + (CA)n Simple_repeat Simple_repeat 2 42 0 1000 111 7 0 chr11 100680242 100680377 -48103095 + AluSq/x SINE Alu 1 136 -177 1657 173 32 11 chr11 100680477 100680755 -48102717 - AluJb SINE Alu -28 284 1 286 323 4 8 chr11 100680840 100680988 -48102484 + MIR3 SINE MIR 12 157 -63 1492 129 91 83 chr11 100681957 100682329 -48101143 + THE1C LTR MaLR 1 375 0 259 313 72 12 chr11 100682381 100682464 -48101008 + MIR SINE MIR 20 107 -155 1937 187 104 12 chr11 100682852 100683035 -48100437 + MLT1C LTR MaLR 1 166 -301 426 79 0 0 chr11 100683035 100683098 -48100374 + (CA)n Simple_repeat Simple_repeat 2 64 0 1937 187 104 12 chr11 100683098 100683337 -48100135 + MLT1C LTR MaLR 166 462 -5 700 203 123 0 chr11 100683726 100683889 -48099583 - MER5A DNA MER1_type 0 189 4 846 127 8 15 chr11 100685186 100685320 -48098152 + FLAM_C SINE Alu 1 133 0 429 244 230 47 chr11 100685421 100685606 -48097866 - MIR SINE MIR -10 252 22 1902 151 0 17 chr11 100685606 100685904 -48097568 - AluJo SINE Alu -19 293 1 429 244 230 47 chr11 100685904 100685931 -48097541 - MIR SINE MIR -240 22 1 330 304 140 27 chr11 100686076 100686411 -48097061 - MLT1K LTR MaLR -99 489 117 718 244 83 67 chr11 100686576 100686936 -48096536 + MLT1H1 LTR MaLR 2 367 -188 423 254 63 28 chr11 100687478 100687620 -48095852 + MIR3 SINE MIR 3 149 -59 457 380 68 10 chr11 100687648 100688058 -48095414 + L2 LINE L2 2090 2523 -791 338 353 92 12 chr11 100688091 100688340 -48095132 + L2 LINE L2 2313 2581 -733 1481 107 0 142 chr11 100688833 100689178 -48094294 - AluYa8 SINE Alu -14 296 1 450 333 27 11 chr11 100690028 100690211 -48093261 - MIR SINE MIR -67 195 10 2021 199 114 9 chr11 100690277 100690831 -48092641 + L1MC4a LINE L1 6947 7558 -250 239 200 67 0 chr11 100690880 100690940 -48092532 + LTR16B LTR ERVL 93 156 -308 378 299 69 5 chr11 100690968 100691172 -48092300 + LTR16B LTR ERVL 235 451 -13 758 202 9 33 chr11 100691180 100691393 -48092079 + L1MC4a LINE L1 7548 7755 -53 25 31 0 0 chr11 100691408 100691440 -48092032 + AT_rich Low_complexity Low_complexity 1 32 0 889 211 62 25 chr11 100691582 100691857 -48091615 - L1ME3 LINE L1 -28 6134 5850 258 268 73 41 chr11 100692061 100692225 -48091247 + MIR SINE MIR 32 193 -64 412 205 102 47 chr11 100692348 100692475 -48090997 - L2 LINE L2 0 3313 3180 37 23 0 0 chr11 100692587 100692631 -48090841 + AT_rich Low_complexity Low_complexity 1 44 0 2201 128 0 0 chr11 100693158 100693454 -48090018 + AluSx SINE Alu 1 296 -16 2225 121 0 0 chr11 100694046 100694343 -48089129 + AluSx SINE Alu 4 300 -12 291 247 0 12 chr11 100696183 100696268 -48087204 + MER113 DNA MER1_type? 1 84 -437 270 218 109 0 chr11 100697638 100697739 -48085733 - L1MC5 LINE L1 -178 7783 7672 23 0 0 0 chr11 100698047 100698070 -48085402 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr11 100698118 100698146 -48085326 + AT_rich Low_complexity Low_complexity 1 28 0 2144 131 0 0 chr11 100698617 100698914 -48084558 - AluSx SINE Alu -15 297 1 546 261 124 28 chr11 100699067 100699316 -48084156 - L1MC4 LINE L1 -1000 7042 6770 299 344 99 20 chr11 100699753 100699933 -48083539 - MIR SINE MIR -65 143 4 969 182 12 0 chr11 100700148 100700318 -48083154 - FAM SINE Alu -3 172 1 758 165 0 0 chr11 100700896 100701011 -48082461 + FLAM_A SINE Alu 1 115 -18 201 138 0 0 chr11 100701013 100701042 -48082430 + (TATATG)n Simple_repeat Simple_repeat 1 29 0 552 224 33 59 chr11 100701176 100701217 -48082255 - MER5B DNA MER1_type -2 176 135 2263 115 3 0 chr11 100701217 100701521 -48081951 - AluSx SINE Alu -7 305 1 552 224 33 59 chr11 100701521 100701631 -48081841 - MER5B DNA MER1_type -43 135 29 2131 131 0 32 chr11 100701678 100701991 -48081481 - AluSx SINE Alu -9 303 1 555 208 80 0 chr11 100702143 100702268 -48081204 + FRAM SINE Alu 1 130 -46 326 350 0 30 chr11 100702557 100702657 -48080815 + L2 LINE L2 3154 3250 -22 407 255 263 19 chr11 100703801 100704174 -48079298 - L1ME4a LINE L1 -293 5828 5365 683 140 123 9 chr11 100706373 100706487 -48076985 + FLAM_C SINE Alu 1 127 -6 1980 136 49 0 chr11 100706583 100706869 -48076603 - AluSx SINE Alu -11 301 2 25 65 0 0 chr11 100707488 100707534 -48075938 + AT_rich Low_complexity Low_complexity 1 46 0 1682 170 0 23 chr11 100707722 100708028 -48075444 + AluJb SINE Alu 1 299 -13 910 151 0 0 chr11 100708062 100708201 -48075271 + AluJb SINE Alu 13 151 -161 597 214 0 0 chr11 100708272 100708375 -48075097 + AluSc SINE Alu 175 277 -32 305 341 54 0 chr11 100708835 100708964 -48074508 + MIR SINE MIR 2 137 -125 2161 128 0 0 chr11 100708975 100709263 -48074209 - AluSx SINE Alu -24 288 1 991 132 0 0 chr11 100709263 100709399 -48074073 - AluJo SINE Alu -176 136 1 187 236 28 104 chr11 100709477 100709583 -48073889 - MER5A DNA MER1_type -38 151 54 23 33 0 0 chr11 100709609 100709639 -48073833 + AT_rich Low_complexity Low_complexity 1 30 0 1963 134 54 57 chr11 100709670 100710058 -48073414 - MLT1B LTR MaLR -3 387 1 554 256 109 21 chr11 100710261 100710499 -48072973 + L2 LINE L2 3055 3313 0 26 50 0 0 chr11 100711056 100711096 -48072376 + AT_rich Low_complexity Low_complexity 1 40 0 3630 201 22 7 chr11 100711185 100712032 -48071440 + L1 LINE L1 4124 4983 -1163 2247 84 3 0 chr11 100712040 100712327 -48071145 + AluY SINE Alu 1 288 -23 1126 145 117 57 chr11 100712434 100712448 -48071024 - AluJb SINE Alu -3 309 297 722 187 107 0 chr11 100712448 100712598 -48070874 - FRAM SINE Alu 0 166 1 1126 145 117 57 chr11 100712598 100712865 -48070607 - AluJb SINE Alu -15 297 11 231 36 0 0 chr11 100712913 100712941 -48070531 + (T)n Simple_repeat Simple_repeat 1 28 0 316 155 0 0 chr11 100712993 100713051 -48070421 + Looper DNA T2_type 526 583 -975 805 160 13 45 chr11 100714036 100714192 -48069280 + FRAM SINE Alu 1 150 -26 1828 124 55 4 chr11 100717227 100717502 -48065970 - AluSx SINE Alu -23 289 1 235 143 0 0 chr11 100717535 100717577 -48065895 - MER39B LTR ERV1 -71 582 541 * 244 123 35 35 chr11 100717544 100717601 -48065871 - LTR29 LTR ERV1 -74 548 459 1083 213 85 11 chr11 100717849 100718121 -48065351 + AluJo SINE Alu 1 292 -10 588 206 30 23 chr11 100719073 100719204 -48064268 + AluJo SINE Alu 126 257 -55 21 0 0 0 chr11 100722906 100722927 -48060545 + AT_rich Low_complexity Low_complexity 1 21 0 281 219 20 0 chr11 100723510 100723572 -48059900 - AluJb SINE Alu -26 276 221 587 164 79 36 chr11 100723572 100723712 -48059760 - AluJb SINE Alu -124 188 43 417 304 52 31 chr11 100724744 100724938 -48058534 + L3 LINE CR1 1317 1514 -63 498 208 72 40 chr11 100725085 100725210 -48058262 + FLAM_A SINE Alu 1 129 -13 697 137 0 0 chr11 100726348 100726450 -48057022 - AluJ/FLAM SINE Alu -210 102 1 2214 111 3 16 chr11 100726469 100726784 -48056688 + AluSq SINE Alu 1 311 -2 2104 116 31 3 chr11 100727637 100727930 -48055542 - AluSx SINE Alu -11 301 1 574 221 0 66 chr11 100727935 100728071 -48055401 - MER5B DNA MER1_type 0 178 52 2112 148 0 0 chr11 100728106 100728416 -48055056 - AluSx SINE Alu 0 312 3 28 61 0 0 chr11 100728884 100728933 -48054539 + AT_rich Low_complexity Low_complexity 1 49 0 744 113 17 35 chr11 100728933 100729048 -48054424 - FLAM_C SINE Alu -16 127 15 418 267 280 7 chr11 100729164 100729357 -48054115 - MIR SINE MIR -16 246 3 424 86 4 6 chr11 100729895 100730140 -48053332 + AluSc SINE Alu 1 293 -16 1996 139 27 3 chr11 100730422 100730716 -48052756 - AluJb SINE Alu -11 301 1 324 0 0 0 chr11 100731203 100731239 -48052233 + (CA)n Simple_repeat Simple_repeat 2 37 0 307 339 75 26 chr11 100731889 100732008 -48051464 + L1ME4a LINE L1 5847 5959 -162 1703 175 0 14 chr11 100732008 100732300 -48051172 + AluJb SINE Alu 1 288 -24 307 339 75 26 chr11 100732300 100732407 -48051065 + L1ME4a LINE L1 5959 6084 -37 2414 70 0 3 chr11 100732414 100732713 -48050759 - AluSx SINE Alu -13 299 2 707 200 0 0 chr11 100732713 100732828 -48050644 - FLAM_A SINE Alu -18 115 1 23 33 0 0 chr11 100733161 100733191 -48050281 + AT_rich Low_complexity Low_complexity 1 30 0 803 92 0 0 chr11 100733191 100733300 -48050172 - HY1 scRNA scRNA -1 111 3 1565 192 6 26 chr11 100733342 100733655 -48049817 + AluJo SINE Alu 6 312 0 22 35 0 0 chr11 100733716 100733745 -48049727 + AT_rich Low_complexity Low_complexity 1 29 0 2231 91 10 0 chr11 100733780 100734076 -48049396 - AluSg SINE Alu -11 299 1 233 100 0 25 chr11 100734101 100734141 -48049331 - Alu SINE Alu -13 289 251 1951 167 3 0 chr11 100734694 100734993 -48048479 + AluJo SINE Alu 1 300 -12 2511 197 19 16 chr11 100735023 100735587 -48047885 + MER90 LTR ERV1 1 566 -9 245 203 62 16 chr11 100735657 100735721 -48047751 + L1MA3 LINE L1 17 83 -7482 290 234 24 81 chr11 100735730 100735854 -48047618 + LTR4 LTR ERV1 1 117 -479 688 240 21 49 chr11 100736119 100736406 -48047066 + LTR4 LTR ERV1 318 596 0 21147 144 36 13 chr11 100736410 100738042 -48045430 + L1MA3 LINE L1 96 1688 -6036 180 0 0 0 chr11 100738042 100738062 -48045410 + (GA)n Simple_repeat Simple_repeat 2 21 0 21147 144 36 13 chr11 100738062 100738356 -48045116 + L1MA3 LINE L1 1688 1974 -5750 2307 100 0 0 chr11 100738356 100738655 -48044817 + AluSc SINE Alu 1 299 -10 21147 144 36 13 chr11 100738655 100740010 -48043462 + L1MA3 LINE L1 1974 3296 -4428 342 0 0 0 chr11 100740010 100740048 -48043424 + (CAA)n Simple_repeat Simple_repeat 2 39 0 21147 144 36 13 chr11 100740048 100740351 -48043121 + L1MA3 LINE L1 3296 3590 -4134 2113 125 0 37 chr11 100740351 100740639 -48042833 + AluSx SINE Alu 1 277 -35 183 42 0 0 chr11 100740639 100740663 -48042809 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2113 125 0 37 chr11 100740663 100740695 -48042777 + AluSx SINE Alu 277 309 -3 21147 144 36 13 chr11 100740695 100741096 -48042376 + L1MA3 LINE L1 3590 3980 -3744 1998 149 0 25 chr11 100741096 100741412 -48042060 + AluSx SINE Alu 3 310 -2 21147 144 36 13 chr11 100741412 100744868 -48038604 + L1MA3 LINE L1 3980 7724 0 225 243 54 0 chr11 100744873 100744947 -48038525 + Charlie2 DNA MER1_type 2675 2752 -110 1899 110 48 27 chr11 100745131 100745423 -48038049 - AluY SINE Alu -13 298 1 369 229 102 57 chr11 100745498 100745655 -48037817 + L1ME4a LINE L1 5931 6094 -27 332 227 73 33 chr11 100746445 100746595 -48036877 + L1ME3A LINE L1 5922 6077 -93 606 303 154 60 chr11 100746648 100747180 -48036292 + HAL1 LINE L1 267 848 -1659 356 251 63 28 chr11 100747275 100747480 -48035992 + HAL1 LINE L1 991 1208 -1299 728 196 76 31 chr11 100747480 100747705 -48035767 - MER106A DNA MER1_type 0 236 2 356 251 63 28 chr11 100747705 100747754 -48035718 + HAL1 LINE L1 1208 1254 -1253 312 228 133 50 chr11 100747772 100747952 -48035520 + HAL1 LINE L1 1950 2144 -363 419 246 23 35 chr11 100747987 100748158 -48035314 + HAL1 LINE L1 2336 2504 -3 824 156 267 11 chr11 100748381 100748561 -48034911 - AluJb SINE Alu -85 227 2 22 35 0 0 chr11 100748720 100748749 -48034723 + AT_rich Low_complexity Low_complexity 1 29 0 2445 66 0 3 chr11 100748835 100749138 -48034334 + AluY SINE Alu 1 302 -9 246 288 0 0 chr11 100749252 100749325 -48034147 + A-rich Low_complexity Low_complexity 3 75 0 2180 125 0 0 chr11 100749639 100749935 -48033537 + AluSq SINE Alu 4 299 -14 2101 114 0 24 chr11 100750639 100750962 -48032510 + AluSx SINE Alu 1 316 0 2063 134 0 13 chr11 100750996 100751309 -48032163 + AluSc SINE Alu 1 309 0 1884 156 7 3 chr11 100751512 100751807 -48031665 - AluJb SINE Alu -15 297 2 1298 163 159 30 chr11 100752200 100752464 -48031008 + AluSg SINE Alu 1 298 -2 21 0 0 0 chr11 100756896 100756917 -48026555 + AT_rich Low_complexity Low_complexity 1 21 0 1802 93 0 0 chr11 100756933 100757158 -48026314 - AluSx SINE Alu -87 225 1 218 284 0 15 chr11 100757563 100757630 -48025842 + GA-rich Low_complexity Low_complexity 2 67 0 2667 184 26 4 chr11 100758015 100758519 -48024953 + Tigger7 DNA MER2_type 4 518 -1969 440 192 0 81 chr11 100758522 100758621 -48024851 + Tigger7 DNA MER2_type 2396 2486 -1 791 191 112 0 chr11 100758894 100759082 -48024390 - MER3 DNA MER1_type 0 209 1 2081 128 13 10 chr11 100759105 100759417 -48024055 - AluSq SINE Alu 0 313 1 22 0 0 0 chr11 100759547 100759569 -48023903 + AT_rich Low_complexity Low_complexity 1 22 0 2108 88 0 10 chr11 100759602 100759898 -48023574 - AluY SINE Alu -18 293 1 2060 163 0 0 chr11 100759899 100760205 -48023267 - AluSx SINE Alu -6 306 1 1041 201 20 10 chr11 100760208 100760407 -48023065 + AluJo SINE Alu 73 273 -39 246 338 44 73 chr11 100760507 100760643 -48022829 - L2 LINE L2 0 3272 3141 521 283 151 64 chr11 100761671 100762109 -48021363 - L2 LINE L2 -1 3312 2837 207 0 0 0 chr11 100762143 100762166 -48021306 + (T)n Simple_repeat Simple_repeat 1 23 0 2255 75 9 47 chr11 100762370 100762546 -48020926 - AluY SINE Alu -1 310 150 2405 82 0 10 chr11 100762546 100762852 -48020620 - AluY SINE Alu -8 303 1 2255 75 9 47 chr11 100762852 100762997 -48020475 - AluY SINE Alu -161 150 1 349 338 102 0 chr11 100763041 100763266 -48020206 + L2 LINE L2 2005 2252 -1062 1917 279 69 68 chr11 100763274 100764598 -48018874 - L2 LINE L2 0 3313 1991 367 246 69 34 chr11 100764857 100765032 -48018440 + L1ME LINE L1 5590 5770 -351 22 0 0 0 chr11 100765419 100765441 -48018031 + AT_rich Low_complexity Low_complexity 1 22 0 840 219 65 29 chr11 100766255 100766533 -48016939 - L1ME3 LINE L1 -6 6156 5869 259 314 65 13 chr11 100766562 100766715 -48016757 + Charlie8 DNA MER1_type 86 246 -2171 1819 133 0 26 chr11 100766795 100767097 -48016375 - AluSq SINE Alu -17 296 3 2153 96 4 4 chr11 100767130 100767438 -48016034 + AluSg SINE Alu 1 308 0 330 321 63 44 chr11 100767606 100767765 -48015707 + L1MEd LINE L1 223 384 -5735 382 307 73 26 chr11 100767987 100768179 -48015293 - L2 LINE L2 -836 2478 2278 2620 169 20 2 chr11 100768287 100768736 -48014736 - LTR32 LTR ERVL 0 471 15 240 286 175 0 chr11 100769721 100769784 -48013688 - L2 LINE L2 0 3272 3199 2189 123 0 0 chr11 100770615 100770924 -48012548 + AluSx SINE Alu 1 309 -3 287 189 95 0 chr11 100771157 100771231 -48012241 - MIR SINE MIR -7 255 175 979 94 39 0 chr11 100771292 100771420 -48012052 + AluSq/x SINE Alu 1 133 -180 1782 140 0 32 chr11 100771425 100771733 -48011739 + AluSc SINE Alu 1 298 -11 364 241 37 56 chr11 100771825 100771933 -48011539 + MIR SINE MIR 29 134 -128 382 268 104 49 chr11 100772247 100772430 -48011042 - MIR3 SINE MIR 0 208 16 1404 220 43 0 chr11 100772720 100773002 -48010470 + AluJo SINE Alu 1 294 -18 281 218 277 10 chr11 100773120 100773221 -48010251 - L2 LINE L2 0 3313 3186 1868 148 14 7 chr11 100773857 100774154 -48009318 + AluSx SINE Alu 1 299 -13 1896 128 48 17 chr11 100774466 100774755 -48008717 + AluJb SINE Alu 1 298 -14 1803 176 13 10 chr11 100775703 100776009 -48007463 + AluJo SINE Alu 1 307 -5 2125 99 13 10 chr11 100776158 100776461 -48007011 - AluSp SINE Alu -9 304 1 2338 90 3 3 chr11 100777243 100777544 -48005928 - AluSp SINE Alu -7 306 6 417 138 0 0 chr11 100777618 100777683 -48005789 + U4 snRNA snRNA 1 65 -80 485 151 0 0 chr11 100777747 100777820 -48005652 + U4 snRNA snRNA 72 144 -1 833 94 0 0 chr11 100778481 100778587 -48004885 + AluSq/x SINE Alu 19 124 -188 2120 107 3 23 chr11 100778994 100779294 -48004178 - AluSc SINE Alu -15 294 1 205 288 112 32 chr11 100779674 100779799 -48003673 - L2 LINE L2 -2 3270 3136 232 284 88 10 chr11 100780039 100780141 -48003331 - MER5B DNA MER1_type -67 111 2 481 218 30 0 chr11 100780256 100780357 -48003115 + U13 snRNA snRNA 1 104 0 510 301 71 5 chr11 100781135 100781331 -48002141 - MIR SINE MIR -52 210 2 859 154 0 0 chr11 100782099 100782222 -48001250 + AluJo/FLAM SINE Alu 3 125 -187 2046 121 20 7 chr11 100782222 100782519 -48000953 - AluSx SINE Alu -11 301 1 1609 170 38 14 chr11 100782546 100782835 -48000637 + AluJb SINE Alu 1 296 -16 42 0 0 0 chr11 100783341 100783383 -48000089 + AT_rich Low_complexity Low_complexity 1 42 0 2316 108 0 0 chr11 100783395 100783690 -47999782 + AluSx SINE Alu 6 300 -12 1293 204 7 25 chr11 100783690 100783969 -47999503 - AluJo SINE Alu -27 285 12 518 246 78 69 chr11 100784129 100784361 -47999111 + MIR SINE MIR 29 262 0 1505 172 41 31 chr11 100785153 100785443 -47998029 - AluJo SINE Alu -19 293 1 621 191 0 44 chr11 100786040 100786176 -47997296 - FLAM_A SINE Alu -2 140 11 237 254 44 18 chr11 100786560 100786674 -47996798 + L1MC5 LINE L1 7786 7902 -59 528 221 61 44 chr11 100786780 100786961 -47996511 + HAL1b LINE L1 701 884 -464 287 118 78 0 chr11 100786961 100787012 -47996460 - MLT2A1 LTR ERVL 0 444 390 227 122 0 0 chr11 100787024 100787065 -47996407 - LTR66 LTR ERVL -172 438 398 3110 74 20 0 chr11 100787075 100787467 -47996005 - MLT2A1 LTR ERVL -44 400 1 713 171 44 13 chr11 100787687 100787845 -47995627 - L1MB7 LINE L1 -14 6170 6008 414 252 173 67 chr11 100788138 100788336 -47995136 - L1MC4a LINE L1 -1963 5845 5601 1807 156 55 0 chr11 100788336 100788611 -47994861 + AluSx SINE Alu 1 290 -22 414 252 173 67 chr11 100788611 100788725 -47994747 - L1MC4a LINE L1 -2207 5601 5500 825 200 6 12 chr11 100788840 100789000 -47994472 + FAM SINE Alu 1 159 -16 198 0 0 0 chr11 100789000 100789022 -47994450 + (T)n Simple_repeat Simple_repeat 1 22 0 2281 94 30 0 chr11 100789196 100789495 -47993977 - AluSc SINE Alu -1 308 1 2172 97 3 14 chr11 100790354 100790644 -47992828 + AluSx SINE Alu 1 287 -25 1504 204 7 26 chr11 100791306 100791615 -47991857 + AluJo SINE Alu 1 303 -9 198 0 0 0 chr11 100791754 100791776 -47991696 + (A)n Simple_repeat Simple_repeat 1 22 0 251 258 0 0 chr11 100791781 100791847 -47991625 + MIR SINE MIR 50 115 -93 303 265 0 41 chr11 100792119 100792217 -47991255 - LTR67 LTR ERVL -34 523 430 842 261 151 65 chr11 100792335 100792798 -47990674 - LTR33 LTR ERVL 0 521 19 40 21 0 0 chr11 100793682 100793729 -47989743 + AT_rich Low_complexity Low_complexity 1 47 0 2151 98 0 83 chr11 100793737 100794074 -47989398 - AluSx SINE Alu -3 309 1 1346 118 28 24 chr11 100794224 100794435 -47989037 - Tigger3(Golem) DNA MER2_type 0 3038 2827 911 97 0 0 chr11 100794777 100794891 -47988581 + FLAM_C SINE Alu 6 119 -24 2059 138 10 0 chr11 100795829 100796119 -47987353 - AluJb SINE Alu -19 293 1 523 221 149 18 chr11 100796936 100797120 -47986352 - MER5C DNA MER1_type -1 323 165 1881 144 11 0 chr11 100797120 100797398 -47986074 - AluSx SINE Alu -31 281 1 523 221 149 18 chr11 100797398 100797494 -47985978 - MER5C DNA MER1_type -159 165 6 290 250 98 0 chr11 100797850 100797942 -47985530 + MIR SINE MIR 48 148 -114 286 154 0 0 chr11 100798267 100798306 -47985166 - Alu SINE Alu -269 39 1 3921 154 80 16 chr11 100798490 100799061 -47984411 + LTR39 LTR ERV1 1 631 -152 1617 197 13 23 chr11 100799061 100799370 -47984102 - AluJb SINE Alu -4 308 3 3921 154 80 16 chr11 100799370 100799532 -47983940 + LTR39 LTR ERV1 631 781 -2 2160 115 17 0 chr11 100799853 100800148 -47983324 + AluSq SINE Alu 1 300 -13 347 211 19 67 chr11 100804777 100804881 -47978591 - L2 LINE L2 -1 3312 3214 394 277 40 0 chr11 100805183 100805284 -47978188 + L2 LINE L2 3168 3272 0 2256 99 0 7 chr11 100805463 100805765 -47977707 - AluSg SINE Alu -10 300 1 1672 154 22 32 chr11 100805861 100806172 -47977300 - AluSx SINE Alu -4 308 1 540 178 153 25 chr11 100806583 100806701 -47976771 - FLAM_C SINE Alu 0 133 1 4901 161 33 34 chr11 100806719 100807298 -47976174 - L1MA9 LINE L1 -7 6305 5726 2286 106 0 0 chr11 100807298 100807591 -47975881 - AluSx SINE Alu -19 293 1 4901 161 33 34 chr11 100807591 100808560 -47974912 - L1MA9 LINE L1 -586 5726 4642 1888 160 0 7 chr11 100808560 100808853 -47974619 - AluJb SINE Alu -21 291 1 4901 161 33 34 chr11 100808853 100809139 -47974333 - L1MA9 LINE L1 -1670 4642 4357 610 179 18 0 chr11 100809140 100809252 -47974220 - AluJb SINE Alu 0 312 199 246 134 17 168 chr11 100809254 100809338 -47974134 + L1 LINE L1 3143 3206 -2940 1857 158 3 23 chr11 100809338 100809648 -47973824 + AluJo SINE Alu 1 304 -8 246 134 17 168 chr11 100809648 100809682 -47973790 + L1 LINE L1 3206 3243 -2903 * 1278 234 62 23 chr11 100809681 100809785 -47973687 - L1MA9 LINE L1 -2998 3148 3049 2444 74 0 7 chr11 100809785 100810082 -47973390 - AluY SINE Alu -16 295 1 1278 234 62 23 chr11 100810082 100810365 -47973107 - L1MA9 LINE L1 -3097 3049 2746 2234 92 7 0 chr11 100810485 100810767 -47972705 + AluSp SINE Alu 1 284 -29 812 99 0 0 chr11 100811005 100811116 -47972356 + HY1 scRNA scRNA 1 111 -1 308 347 54 46 chr11 100811140 100811379 -47972093 + L1ME4a LINE L1 5806 6046 -75 597 192 10 0 chr11 100812530 100812634 -47970838 + MER81 DNA DNA 6 110 -4 2234 98 0 7 chr11 100812636 100812933 -47970539 + AluSx SINE Alu 9 303 -9 277 220 90 6 chr11 100813221 100813299 -47970173 - MIR SINE MIR -96 112 32 289 283 11 11 chr11 100813859 100813951 -47969521 + L2 LINE L2 3222 3313 0 1598 157 27 30 chr11 100814141 100814441 -47969031 - AluJb SINE Alu -11 301 3 1302 172 124 8 chr11 100814444 100814694 -47968778 - AluSg SINE Alu -12 298 20 989 294 44 31 chr11 100815250 100815702 -47967770 + L1MC4a LINE L1 5454 5911 -1897 226 211 0 19 chr11 100815808 100815860 -47967612 + L1ME2 LINE L1 5962 6012 -152 325 228 95 22 chr11 100816124 100816241 -47967231 - MIR SINE MIR -66 142 28 1564 155 7 36 chr11 100816380 100816683 -47966789 + MER33 DNA MER1_type 1 294 -30 1790 146 51 4 chr11 100816685 100816960 -47966512 + AluJb SINE Alu 5 292 -20 204 316 91 62 chr11 100817210 100817706 -47965766 + L2 LINE L2 830 1339 -1975 530 317 63 37 chr11 100817718 100817825 -47965647 + L2 LINE L2 2001 2104 -1210 1904 164 47 85 chr11 100817825 100817879 -47965593 + MSTC LTR MaLR 1 56 -372 1997 146 0 28 chr11 100817879 100818200 -47965272 + AluSx SINE Alu 1 312 0 1904 164 47 85 chr11 100818200 100818527 -47964945 + MSTC LTR MaLR 56 365 -63 1572 194 7 16 chr11 100818527 100818836 -47964636 + AluJo SINE Alu 1 306 -6 1904 164 47 85 chr11 100818836 100818898 -47964574 + MSTC LTR MaLR 365 428 0 530 317 63 37 chr11 100818898 100819140 -47964332 + L2 LINE L2 2104 2359 -955 709 352 66 32 chr11 100819333 100820214 -47963258 + L2 LINE L2 2322 3237 -35 270 0 0 0 chr11 100820396 100820426 -47963046 + (CA)n Simple_repeat Simple_repeat 1 30 0 2214 115 0 0 chr11 100820430 100820716 -47962756 - AluSx SINE Alu -26 286 1 352 285 27 38 chr11 100820902 100821092 -47962380 + MIR SINE MIR 38 223 -39 219 310 30 20 chr11 100821437 100821537 -47961935 + MIR SINE MIR 20 120 -88 2054 125 3 13 chr11 100821574 100821887 -47961585 + AluSx SINE Alu 1 310 -2 1822 151 3 22 chr11 100821894 100822211 -47961261 + AluJb SINE Alu 1 311 -1 183 333 74 0 chr11 100822837 100822918 -47960554 + MIR SINE MIR 89 175 -87 2130 155 62 17 chr11 100823140 100823546 -47959926 + MLT1C LTR MaLR 1 424 -43 503 200 125 25 chr11 100823629 100823789 -47959683 + MER5B DNA MER1_type 3 178 0 474 194 70 16 chr11 100824075 100824204 -47959268 - MER5A DNA MER1_type 0 189 54 3661 139 56 15 chr11 100824232 100824844 -47958628 + MER51C LTR ERV1 4 640 0 332 202 53 11 chr11 100824884 100824978 -47958494 - MER5A DNA MER1_type 0 189 92 598 301 16 33 chr11 100825267 100825535 -47957937 + MIR SINE MIR 3 262 0 268 321 37 9 chr11 100825510 100825619 -47957853 + L3 LINE CR1 1360 1471 -106 * 2136 104 38 0 chr11 100826204 100826491 -47956981 + AluSx SINE Alu 1 298 -14 541 276 11 93 chr11 100826554 100826822 -47956650 + L2 LINE L2 2988 3233 -39 270 0 0 0 chr11 100826843 100826873 -47956599 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 336 306 127 19 chr11 100826874 100827031 -47956441 + MIR SINE MIR 89 262 0 426 227 50 42 chr11 100828496 100828615 -47954857 - MER5B DNA MER1_type 0 178 59 226 302 135 0 chr11 100829193 100829319 -47954153 + L2 LINE L2 2938 3080 -192 261 211 19 0 chr11 100829323 100829375 -47954097 + L1MEd LINE L1 597 649 -5470 781 129 0 61 chr11 100829407 100829539 -47953933 - FLAM_A SINE Alu -9 124 1 2566 65 0 7 chr11 100830141 100830449 -47953023 - AluSc SINE Alu -3 306 1 1691 168 60 31 chr11 100831149 100831501 -47951971 - MLT1A2 LTR MaLR 0 374 13 210 288 17 42 chr11 100831686 100831804 -47951668 - L2 LINE L2 -1 3271 3157 1583 171 13 44 chr11 100832526 100832841 -47950631 - AluJb SINE Alu -7 305 1 406 260 89 7 chr11 100832843 100832989 -47950483 + MIR SINE MIR 105 262 0 22 88 0 0 chr11 100833510 100833567 -47949905 + GC_rich Low_complexity Low_complexity 1 57 0 21 0 0 0 chr11 100834047 100834068 -47949404 + GC_rich Low_complexity Low_complexity 1 21 0 348 94 0 0 chr11 100834380 100834433 -47949039 + (TCCA)n Simple_repeat Simple_repeat 1 53 0 213 189 0 0 chr11 100834512 100834549 -47948923 - L2 LINE L2 -41 3231 3195 2128 53 0 19 chr11 100834608 100834873 -47948599 + AluY SINE Alu 44 303 -8 486 306 38 29 chr11 100835030 100835320 -47948152 + MLT1L LTR MaLR 101 457 -158 1947 143 0 10 chr11 100835323 100835616 -47947856 + AluJo SINE Alu 1 290 -22 317 329 24 29 chr11 100835868 100836038 -47947434 + MLT1K LTR MaLR 297 465 -123 234 354 71 0 chr11 100836208 100836335 -47947137 - L2 LINE L2 0 3272 3137 1699 136 171 76 chr11 100836422 100836791 -47946681 - MER4A LTR ERV1 0 664 261 609 137 20 10 chr11 100836787 100836889 -47946583 - MER4A LTR ERV1 -560 104 2 * 1562 143 12 4 chr11 100836898 100837149 -47946323 - MER4A-int LTR ERV1 -2 6596 6344 * 10768 97 52 34 chr11 100837145 100838637 -47944835 - MER4A-int LTR ERV1 -927 5671 4139 1950 119 40 0 chr11 100838637 100838914 -47944558 - AluSq SINE Alu -20 293 6 10768 97 52 34 chr11 100838914 100839224 -47944248 - MER4A-int LTR ERV1 -2459 4139 3836 660 189 43 12 chr11 100839222 100839386 -47944086 - MER4A-int LTR ERV1 -2917 3681 3513 * 261 0 0 0 chr11 100839495 100839524 -47943948 + (TG)n Simple_repeat Simple_repeat 2 30 0 2731 104 91 13 chr11 100839537 100840175 -47943297 - MER4A-int LTR ERV1 -5791 807 1 1823 133 160 76 chr11 100840180 100840549 -47942923 - MER4A LTR ERV1 -2 662 263 627 146 10 0 chr11 100840549 100840645 -47942827 - MER4A LTR ERV1 -566 98 2 272 269 75 0 chr11 100840646 100840713 -47942759 + L2 LINE L2 3238 3309 -4 592 281 47 6 chr11 100840906 100841077 -47942395 + MER5B DNA MER1_type 1 178 0 237 246 49 0 chr11 100841215 100841276 -47942196 - L2 LINE L2 -1 3312 3249 595 134 21 10 chr11 100842146 100842243 -47941229 + MER4A LTR ERV1 1 98 -566 360 96 19 0 chr11 100842243 100842295 -47941177 + MER4A LTR ERV1 261 313 -351 2774 104 89 18 chr11 100842298 100842807 -47940665 - MER4A-int LTR ERV1 -6009 589 1 694 162 0 17 chr11 100842810 100842927 -47940545 - MER4A LTR ERV1 0 664 550 6656 122 81 10 chr11 100842927 100844117 -47939355 + MER4-int LTR ERV1 553 2387 -4211 550 165 21 10 chr11 100844149 100844246 -47939226 + MER4A LTR ERV1 1 98 -566 1630 153 9 26 chr11 100844246 100844580 -47938892 + MER4A LTR ERV1 261 647 -17 2082 122 13 6 chr11 100844622 100844934 -47938538 + LTR24C LTR ERV1 1 314 -321 620 152 0 36 chr11 100844941 100845053 -47938419 + L1PA16 LINE L1 6055 6162 -4 2400 126 55 13 chr11 100845129 100845510 -47937962 - MER48 LTR ERV1 0 398 2 371 82 0 0 chr11 100845511 100845560 -47937912 - HERVH48 LTR ERV1 0 6654 6606 5476 128 37 7 chr11 100845560 100846413 -47937059 - HERVH48 LTR ERV1 -82 6671 5794 39519 113 17 5 chr11 100847466 100853221 -47930251 - HERVH48 LTR ERV1 -831 5823 1 2418 147 33 10 chr11 100853221 100853610 -47929862 - MER48 LTR ERV1 0 398 1 1408 153 20 20 chr11 100853610 100853865 -47929607 + LTR24C LTR ERV1 381 635 0 313 244 0 22 chr11 100853865 100853955 -47929517 + L1MA10 LINE L1 6244 6331 -3 516 226 75 8 chr11 100854138 100854271 -47929201 + MER97b DNA MER1_type? 38 179 -874 184 307 80 13 chr11 100854953 100855028 -47928444 - L2 LINE L2 -4 3268 3189 495 254 45 23 chr11 100855048 100855225 -47928247 - MIR SINE MIR -53 209 29 1764 149 20 30 chr11 100855310 100855659 -47927813 - MER4A LTR ERV1 0 664 261 640 113 21 10 chr11 100855659 100855756 -47927716 - MER4A LTR ERV1 -566 98 1 15617 105 63 16 chr11 100855761 100858166 -47925306 - MER4A-int LTR ERV1 -1 6597 4065 2559 65 7 0 chr11 100858166 100858473 -47924999 - AluY SINE Alu -2 309 1 15617 105 63 16 chr11 100858473 100858585 -47924887 - MER4A-int LTR ERV1 -2533 4065 3960 12047 109 171 119 chr11 100858602 100860420 -47923052 - MER4A-int LTR ERV1 -3231 3367 1645 1975 146 17 0 chr11 100860420 100860721 -47922751 + AluSx SINE Alu 1 306 -6 12047 109 171 119 chr11 100860721 100861072 -47922400 - MER4A-int LTR ERV1 -4953 1645 1314 441 0 0 0 chr11 100861072 100861121 -47922351 + (CA)n Simple_repeat Simple_repeat 2 50 0 12047 109 171 119 chr11 100861121 100862149 -47921323 - MER4A-int LTR ERV1 -5284 1314 3 1501 129 38 111 chr11 100862154 100862527 -47920945 - MER4A LTR ERV1 0 664 261 636 106 43 0 chr11 100862527 100862621 -47920851 - MER4A LTR ERV1 -566 98 1 1033 224 82 22 chr11 100862621 100862744 -47920728 - L1ME1 LINE L1 -116 6050 5936 1264 196 82 90 chr11 100862744 100863198 -47920274 + LTR7 LTR ERV1 1 450 0 1033 224 82 22 chr11 100863198 100863391 -47920081 - L1ME1 LINE L1 -230 5936 5715 236 153 17 51 chr11 100863442 100863501 -47919971 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 404 297 28 7 chr11 100863644 100863789 -47919683 + MIR SINE MIR 47 194 -68 190 213 0 100 chr11 100863810 100863890 -47919582 - MIR SINE MIR -43 219 148 2115 142 7 0 chr11 100863892 100864202 -47919270 - AluSx SINE Alu 0 312 1 1769 185 7 0 chr11 100864208 100864494 -47918978 - AluSx SINE Alu -24 288 1 238 306 24 12 chr11 100864547 100864632 -47918840 - MIR SINE MIR -175 87 2 227 280 27 0 chr11 100864644 100864719 -47918753 + MIR SINE MIR 183 259 -3 4803 117 10 10 chr11 100865160 100865851 -47917621 + LTR8 LTR ERV1 1 691 0 732 251 12 12 chr11 100866306 100866473 -47916999 + MER45A DNA AcHobo 1 167 -11 341 271 8 3 chr11 100866787 100866917 -47916555 + MER5A DNA MER1_type 15 183 -6 277 262 151 40 chr11 100866924 100867050 -47916422 + MER5B DNA MER1_type 1 140 -38 1339 253 118 66 chr11 100867059 100867544 -47915928 - MLT1E LTR MaLR 0 593 76 781 181 0 8 chr11 100867544 100867677 -47915795 + FLAM_C SINE Alu 1 132 -1 1339 253 118 66 chr11 100867677 100867724 -47915748 - MLT1E LTR MaLR -517 76 33 2487 88 12 86 chr11 100867772 100868179 -47915293 - MER51B LTR ERV1 0 377 1 381 282 122 0 chr11 100868237 100868393 -47915079 + MER117 DNA MER1_type 21 195 -2 809 198 14 112 chr11 100868557 100868684 -47914788 - MIR SINE MIR 0 262 124 2348 125 12 35 chr11 100868684 100868872 -47914600 + L1MA5 LINE L1 5881 6072 -228 195 42 0 0 chr11 100868872 100868896 -47914576 + (TTTC)n Simple_repeat Simple_repeat 2 25 0 2317 82 4 0 chr11 100868899 100869180 -47914292 - AluSg SINE Alu -28 282 1 2348 125 12 35 chr11 100869180 100869411 -47914061 + L1MA5 LINE L1 6074 6294 -6 809 198 14 112 chr11 100869411 100869561 -47913911 - MIR SINE MIR -138 124 12 458 241 42 31 chr11 100869610 100869801 -47913671 + L1ME4a LINE L1 5704 5896 -225 235 348 6 24 chr11 100869853 100870017 -47913455 + GA-rich Low_complexity Low_complexity 2 162 0 1859 178 3 0 chr11 100870482 100870786 -47912686 + AluJb SINE Alu 1 305 -7 195 100 0 0 chr11 100870981 100871011 -47912461 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 2459 77 10 13 chr11 100871082 100871393 -47912079 - AluY SINE Alu -1 310 1 221 244 74 79 chr11 100871616 100871768 -47911704 - MIR SINE MIR -68 140 2 201 302 63 32 chr11 100871854 100871980 -47911492 - MIR SINE MIR -28 234 105 273 200 0 0 chr11 100872456 100872506 -47910966 + MLT2B1 LTR ERVL 469 518 -2 247 321 37 0 chr11 100872508 100872617 -47910855 + MIR SINE MIR 47 159 -103 852 108 0 17 chr11 100872630 100872750 -47910722 - FLAM_C SINE Alu -15 118 1 2085 107 0 34 chr11 100872770 100873068 -47910404 - AluSx SINE Alu -24 288 1 3727 176 47 35 chr11 100873546 100874315 -47909157 + LTR19C LTR ERV1 1 778 -1 1623 250 42 81 chr11 100874723 100874835 -47908637 - L1ME3A LINE L1 -274 5896 5781 705 197 46 73 chr11 100874835 100875053 -47908419 + MER58C DNA MER1_type 1 212 -3 1623 250 42 81 chr11 100875053 100875434 -47908038 - L1ME3A LINE L1 -389 5781 5386 2140 121 0 20 chr11 100875434 100875731 -47907741 - AluSx SINE Alu -21 291 1 1623 250 42 81 chr11 100875731 100876084 -47907388 - L1ME3A LINE L1 -784 5386 5021 1993 118 31 7 chr11 100876084 100876373 -47907099 - AluSg1 SINE Alu -13 296 1 1623 250 42 81 chr11 100876373 100876485 -47906987 - L1ME3A LINE L1 -1149 5021 4906 2119 134 10 0 chr11 100876485 100876784 -47906688 - AluSx SINE Alu -10 302 1 1623 250 42 81 chr11 100876784 100877400 -47906072 - L1ME3A LINE L1 -1264 4906 4391 239 302 66 0 chr11 100877735 100877841 -47905631 - MIR SINE MIR -58 204 92 3140 148 15 9 chr11 100877842 100878383 -47905089 + L1MA7 LINE L1 5748 6291 0 263 241 157 0 chr11 100879720 100879803 -47903669 - L2 LINE L2 0 3313 3218 2011 143 3 16 chr11 100879900 100880208 -47903264 - AluSx SINE Alu -8 304 1 2134 122 7 0 chr11 100880786 100881081 -47902391 + AluSq SINE Alu 1 297 -16 6217 98 16 1 chr11 100881257 100882238 -47901234 - L1PA7 LINE L1 -2802 3344 2349 14758 82 6 0 chr11 100882238 100885064 -47898408 + L1PA7 LINE L1 3341 6154 0 1038 168 5 25 chr11 100885064 100885267 -47898205 + L1MB2 LINE L1 5596 5794 -377 228 234 0 0 chr11 100885277 100885324 -47898148 + (CA)n Simple_repeat Simple_repeat 2 48 0 2134 112 29 39 chr11 100885350 100885735 -47897737 + L1MB2 LINE L1 5791 6171 0 339 262 123 60 chr11 100885737 100886054 -47897418 - L1MC4 LINE L1 -15 8027 7691 590 261 71 102 chr11 100886086 100886695 -47896777 - L2 LINE L2 -4 3309 2698 325 128 64 18 chr11 100886695 100886804 -47896668 + (TA)n Simple_repeat Simple_repeat 2 115 0 250 153 41 10 chr11 100886826 100886924 -47896548 + (TA)n Simple_repeat Simple_repeat 1 101 0 993 119 35 0 chr11 100886929 100887072 -47896400 - AluSg/x SINE Alu -30 282 135 221 268 42 60 chr11 100887073 100887241 -47896231 + L2 LINE L2 2236 2400 -914 310 265 75 48 chr11 100888010 100888157 -47895315 + MIR SINE MIR 65 215 -47 205 225 84 28 chr11 100888852 100888923 -47894549 + MIR SINE MIR 47 121 -141 1049 178 11 5 chr11 100889312 100889497 -47893975 + AluJo SINE Alu 127 312 0 685 267 233 14 chr11 100889664 100890102 -47893370 + L3 LINE CR1 1039 1572 -5 492 232 9 27 chr11 100890692 100890804 -47892668 + MIR SINE MIR 89 198 -64 498 103 9 11 chr11 100891114 100891343 -47892129 + AluSx SINE Alu 2 276 -34 222 37 0 0 chr11 100891345 100891372 -47892100 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 958 176 16 5 chr11 100891425 100891612 -47891860 - MER5A DNA MER1_type 0 189 1 1870 175 36 48 chr11 100891891 100892309 -47891163 + MLT2D LTR ERVL 1 413 -1 1875 160 48 3 chr11 100892744 100893037 -47890435 - AluJb SINE Alu -6 306 1 574 333 24 5 chr11 100893049 100893256 -47890216 - MIR SINE MIR -50 212 2 466 265 51 8 chr11 100893332 100893449 -47890023 + L2 LINE L2 3151 3272 0 47 67 0 0 chr11 100894173 100894262 -47889210 + AT_rich Low_complexity Low_complexity 1 89 0 1913 121 0 0 chr11 100894263 100894519 -47888953 - AluSx SINE Alu -56 256 1 1262 164 26 0 chr11 100894546 100894778 -47888694 - L1MB4 LINE L1 -3 6177 5940 311 245 174 10 chr11 100895030 100895128 -47888344 - MIR SINE MIR -76 132 19 858 198 43 0 chr11 100895202 100895364 -47888108 + FRAM SINE Alu 1 168 -8 570 194 97 0 chr11 100895367 100895501 -47887971 - L1MB7 LINE L1 -64 6120 5974 1038 112 17 6 chr11 100895501 100895679 -47887793 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 3736 174 61 32 chr11 100895680 100896982 -47886490 - L1MB7 LINE L1 -353 5831 4490 11468 174 26 11 chr11 100896994 100899588 -47883884 - L1 LINE L1 -1448 6117 3484 2974 215 17 8 chr11 100899600 100900321 -47883151 - L1MB7 LINE L1 -1664 4482 3756 404 253 121 33 chr11 100901520 100901702 -47881770 + MIR SINE MIR 65 262 0 651 250 14 14 chr11 100901815 100901963 -47881509 + MIR SINE MIR 13 160 -102 468 279 52 43 chr11 100902189 100902422 -47881050 + MIR SINE MIR 12 246 -16 * 538 258 126 18 chr11 100902370 100902537 -47880935 - MIR SINE MIR -10 252 68 184 344 49 0 chr11 100904533 100904594 -47878878 + L2 LINE L2 3248 3311 -2 1304 208 283 20 chr11 100904859 100904894 -47878578 + LTR50 LTR ERVL 6 31 -764 2249 64 7 4 chr11 100904894 100905175 -47878297 - AluY SINE Alu 0 311 30 1304 208 283 20 chr11 100905175 100905736 -47877736 + LTR50 LTR ERVL 31 759 -36 10130 182 51 62 chr11 100905736 100907743 -47875729 + L1MC1 LINE L1 19 2048 -4378 2096 139 0 3 chr11 100907743 100908038 -47875434 - AluSx SINE Alu -18 294 1 10130 182 51 62 chr11 100908038 100909634 -47873838 + L1MC1 LINE L1 2048 3661 -2765 3356 42 7 0 chr11 100909634 100910041 -47873431 + L1PA5 LINE L1 5739 6148 -6 10130 182 51 62 chr11 100910041 100910073 -47873399 + L1MC1 LINE L1 3661 3692 -2734 2109 144 0 0 chr11 100910073 100910372 -47873100 + AluSx SINE Alu 1 299 -13 10130 182 51 62 chr11 100910372 100911400 -47872072 + L1MC1 LINE L1 3692 4626 -1800 1000 232 10 3 chr11 100911394 100911687 -47871785 + L1MC1 LINE L1 4564 4858 -1568 * 5254 157 8 16 chr11 100911716 100912297 -47871175 - L1PB3 LINE L1 0 6154 5570 2883 16 0 3 chr11 100912297 100912616 -47870856 - AluYb8 SINE Alu 0 318 1 5254 157 8 16 chr11 100912616 100913725 -47869747 - L1PB3 LINE L1 -584 5570 4476 5558 176 39 19 chr11 100913786 100914298 -47869174 + L1MC1 LINE L1 4870 5370 -1243 2410 66 0 28 chr11 100914298 100914618 -47868854 + AluY SINE Alu 1 311 0 5558 176 39 19 chr11 100914618 100915347 -47868125 + L1MC1 LINE L1 5370 6150 -463 2455 82 0 0 chr11 100915347 100915652 -47867820 + AluY SINE Alu 1 305 -6 5558 176 39 19 chr11 100915652 100916126 -47867346 + L1MC1 LINE L1 6150 6613 0 431 369 34 17 chr11 100916442 100916621 -47866851 - MIR3 SINE MIR -23 185 4 1778 242 98 19 chr11 100916858 100916886 -47866586 + L2 LINE L2 2075 2099 -1215 2425 125 28 14 chr11 100916886 100917245 -47866227 + THE1B LTR MaLR 1 364 0 1778 242 98 19 chr11 100917245 100917808 -47865664 + L2 LINE L2 2099 2713 -601 714 313 72 33 chr11 100917808 100918390 -47865082 + L1MEc LINE L1 175 779 -5617 500 278 112 24 chr11 100918447 100918652 -47864820 + L2 LINE L2 2919 3141 -172 279 0 0 0 chr11 100918817 100918848 -47864624 + (TG)n Simple_repeat Simple_repeat 2 32 0 421 336 90 16 chr11 100919297 100919660 -47863812 - L2 LINE L2 -181 3091 2593 294 233 361 22 chr11 100919676 100919856 -47863616 - MIR SINE MIR -5 257 17 21 57 0 0 chr11 100920712 100920747 -47862725 + AT_rich Low_complexity Low_complexity 1 35 0 1983 143 0 26 chr11 100920754 100921061 -47862411 + AluJo SINE Alu 5 303 -9 27 0 0 0 chr11 100921061 100921088 -47862384 + AT_rich Low_complexity Low_complexity 1 27 0 818 269 64 37 chr11 100921149 100921446 -47862026 + L2 LINE L2 3009 3313 0 1556 168 8 4 chr11 100921759 100922021 -47861451 + AluJb SINE Alu 33 295 -17 207 234 32 48 chr11 100922216 100922340 -47861132 + L2 LINE L2 2864 2985 -328 181 133 0 0 chr11 100922533 100922563 -47860909 + MIR SINE MIR 111 140 -68 295 301 143 41 chr11 100922990 100923186 -47860286 - L2 LINE L2 -1 3271 3056 2676 158 147 108 chr11 100923664 100924238 -47859234 - L1MC3 LINE L1 0 7785 7071 340 211 44 33 chr11 100924238 100924328 -47859144 - MLT1F1 LTR MaLR -434 133 43 2676 158 147 108 chr11 100924328 100924621 -47858851 - L1MC3 LINE L1 -714 7071 6791 786 232 83 12 chr11 100924650 100924891 -47858581 - MER21B LTR ERV1 -58 805 548 1199 200 85 132 chr11 100925149 100925680 -47857792 - MER21B LTR ERV1 -345 518 13 434 193 11 23 chr11 100925699 100925787 -47857685 - MER21B LTR ERV1 -776 87 1 1894 210 68 21 chr11 100925818 100926290 -47857182 - L1MC3 LINE L1 -1012 6773 6280 1129 253 65 13 chr11 100926809 100927196 -47856276 + MER57B LTR ERV1 1 407 -27 1693 153 49 7 chr11 100927438 100927725 -47855747 - AluJo SINE Alu -7 305 7 274 283 67 25 chr11 100928478 100928598 -47854874 + MER91A DNA MER1_type 1 125 -71 1628 214 97 2 chr11 100928599 100929020 -47854452 - MLT1C LTR MaLR -1 466 6 237 239 0 0 chr11 100929111 100929157 -47854315 + MER91A DNA MER1_type 144 189 -1 5488 34 0 5 chr11 100929466 100930083 -47853389 - SVA Other Other 0 1386 773 16244 80 54 4 chr11 100930183 100933005 -47850467 - L1PA7 LINE L1 -313 5841 2870 212 245 0 0 chr11 100933007 100933060 -47850412 + MIR3 SINE MIR 153 205 -3 189 289 0 0 chr11 100933127 100933172 -47850300 + L3 LINE CR1 1488 1532 -45 598 136 218 0 chr11 100934585 100934695 -47848777 - FLAM_C SINE Alu -7 136 3 433 287 130 9 chr11 100936136 100936251 -47847221 + L2 LINE L2 3128 3256 -16 799 256 57 26 chr11 100936482 100936709 -47846763 + MIR SINE MIR 29 262 0 438 342 22 31 chr11 100937523 100937745 -47845727 + MIR SINE MIR 26 245 -17 201 74 0 0 chr11 100937766 100937793 -47845679 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 6070 134 10 3 chr11 100938545 100939802 -47843670 + L1PB2 LINE L1 4885 6149 -2 973 42 0 0 chr11 100939847 100939965 -47843507 + Tigger1 DNA MER2_type 1611 1728 -690 * 13830 121 25 97 chr11 100939963 100940319 -47843153 + Tigger1 DNA MER2_type 24 404 -2014 3736 123 6 4 chr11 100940319 100940829 -47842643 + MER9 LTR ERVK 1 511 0 13830 121 25 97 chr11 100940829 100941482 -47841990 + Tigger1 DNA MER2_type 404 1102 -1316 1953 161 6 3 chr11 100941482 100941793 -47841679 - AluSx SINE Alu 0 312 1 13830 121 25 97 chr11 100941793 100941885 -47841587 + Tigger1 DNA MER2_type 1102 1199 -1219 851 150 0 8 chr11 100941885 100942018 -47841454 - FLAM_C SINE Alu -11 132 1 13830 121 25 97 chr11 100942018 100943242 -47840230 + Tigger1 DNA MER2_type 1199 2292 -126 1795 176 3 7 chr11 100943242 100943538 -47839934 - AluJb SINE Alu -17 295 1 13830 121 25 97 chr11 100943538 100943657 -47839815 + Tigger1 DNA MER2_type 2292 2418 0 2305 115 0 0 chr11 100944568 100944880 -47838592 - AluSx SINE Alu 0 312 1 2210 102 0 0 chr11 100945135 100945449 -47838023 - AluSq SINE Alu 0 314 1 203 351 129 15 chr11 100945681 100945883 -47837589 - MIR SINE MIR -10 252 28 336 244 142 31 chr11 100948505 100948632 -47834840 - MIR SINE MIR -108 154 14 554 323 25 6 chr11 100949625 100949786 -47833686 + MIR3 SINE MIR 14 177 -31 730 236 86 120 chr11 100951351 100951876 -47831596 - MLT1J LTR MaLR 0 511 5 183 270 0 0 chr11 100952034 100952071 -47831401 - MIR SINE MIR -15 247 211 447 260 140 7 chr11 100952193 100952343 -47831129 + MIR SINE MIR 2 171 -91 1483 185 161 35 chr11 100952343 100952771 -47830701 - MLT1D LTR MaLR 0 505 24 450 258 113 3 chr11 100952946 100953147 -47830325 - MIR SINE MIR 0 262 35 202 407 59 0 chr11 100953619 100953737 -47829735 + L2 LINE L2 3132 3256 -16 767 169 15 44 chr11 100954414 100954550 -47828922 - FLAM_C SINE Alu -1 132 1 252 286 116 21 chr11 100954727 100954890 -47828582 - MLT1I LTR MaLR -194 215 37 405 295 16 24 chr11 100954924 100955086 -47828386 - MER5B DNA MER1_type -28 160 1 186 250 191 0 chr11 100955580 100955648 -47827824 + MIR3 SINE MIR 11 91 -117 773 250 51 51 chr11 100955869 100956145 -47827327 - MLT1J LTR MaLR -139 372 97 351 0 0 0 chr11 100956756 100956795 -47826677 + (CA)n Simple_repeat Simple_repeat 2 40 0 500 249 97 5 chr11 100956804 100956989 -47826483 - L1MC4a LINE L1 -1898 5910 5709 4702 124 16 11 chr11 100958025 100958733 -47824739 + MER50 LTR ERV1 1 711 -23 1063 30 0 45 chr11 100960912 100961046 -47822426 - L1PA5 LINE L1 0 6154 6027 2653 40 0 0 chr11 100961158 100961460 -47822012 - AluY SINE Alu -9 302 1 24 0 0 0 chr11 100961470 100961494 -47821978 + AT_rich Low_complexity Low_complexity 1 24 0 1907 67 0 13 chr11 100962043 100962282 -47821190 + AluY SINE Alu 65 300 -11 43877 34 21 1 chr11 100962282 100968313 -47815159 + L1PA2 LINE L1 3 6155 0 940 128 39 59 chr11 100968329 100968533 -47814939 + Charlie1 DNA MER1_type 2556 2755 -6 219 242 30 15 chr11 100969394 100969460 -47814012 + L2 LINE L2 3247 3313 0 281 359 58 39 chr11 100970184 100970443 -47813029 + L2 LINE L2 2829 3092 -180 481 295 81 0 chr11 100970461 100970610 -47812862 + MIR SINE MIR 65 225 -37 28 29 0 0 chr11 100970914 100970949 -47812523 + AT_rich Low_complexity Low_complexity 1 35 0 1896 108 0 4 chr11 100970997 100971246 -47812226 + AluSx SINE Alu 37 284 -28 186 43 0 0 chr11 100971246 100971269 -47812203 + (CATA)n Simple_repeat Simple_repeat 2 24 0 225 333 114 0 chr11 100971377 100971509 -47811963 - L1MC4a LINE L1 -833 5526 5380 283 270 0 0 chr11 100972422 100972496 -47810976 + Charlie8 DNA MER1_type 2344 2417 0 316 213 62 25 chr11 100972502 100972582 -47810890 + MIR SINE MIR 114 196 -66 307 295 57 9 chr11 100972666 100972771 -47810701 + L2 LINE L2 3154 3263 -9 2518 162 98 21 chr11 100974117 100974599 -47808873 - LTR44 LTR ERV1 0 519 1 2106 149 41 24 chr11 100974828 100975197 -47808275 + THE1C LTR MaLR 1 375 0 1440 263 58 51 chr11 100975232 100975482 -47807990 - LOR1-int LTR ERV1 -2720 5400 5153 2114 128 7 7 chr11 100975482 100975778 -47807694 - AluSx SINE Alu -16 296 1 1440 263 58 51 chr11 100975778 100976178 -47807294 - LOR1-int LTR ERV1 -2967 5153 4745 1360 204 44 59 chr11 100976171 100976851 -47806621 - LOR1-int LTR ERV1 -1912 4419 3728 * 381 102 0 143 chr11 100976892 100976990 -47806482 + MER4-int LTR ERV1 3365 3448 -3150 411 143 0 0 chr11 100977005 100977068 -47806404 - Alu SINE Alu -12 300 238 3796 183 95 68 chr11 100977118 100977392 -47806080 - LOR1-int LTR ERV1 -2868 3730 3465 1719 170 24 0 chr11 100977392 100977681 -47805791 + AluJb SINE Alu 1 296 -16 3796 183 95 68 chr11 100977681 100978502 -47804970 - LOR1-int LTR ERV1 -3133 3465 2668 184 29 0 57 chr11 100978502 100978537 -47804935 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 3796 183 95 68 chr11 100978537 100978981 -47804491 - LOR1-int LTR ERV1 -3930 2668 2237 210 71 0 0 chr11 100978981 100979009 -47804463 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 3796 183 95 68 chr11 100979009 100979024 -47804448 - LOR1-int LTR ERV1 -4361 2237 2224 1528 201 7 0 chr11 100979024 100979297 -47804175 - AluJo SINE Alu -24 288 14 3796 183 95 68 chr11 100979297 100979344 -47804128 - LOR1-int LTR ERV1 -4374 2224 896 1926 157 143 3 chr11 100979344 100979694 -47803778 - MSTA LTR MaLR 0 428 30 2290 173 71 49 chr11 100980521 100980652 -47802820 - LTR44 LTR ERV1 0 519 392 2059 129 7 35 chr11 100980652 100980962 -47802510 - AluSx SINE Alu -11 301 1 2290 173 71 49 chr11 100980962 100981338 -47802134 - LTR44 LTR ERV1 -127 392 1 1253 200 144 44 chr11 100982274 100982719 -47800753 + L1ME3A LINE L1 5665 6165 -5 748 113 77 181 chr11 100982823 100983171 -47800301 + MER33 DNA MER1_type 1 341 -22 322 343 45 0 chr11 100983449 100983627 -47799845 + LTR33 LTR ERVL 279 464 -57 230 343 14 0 chr11 100983680 100983750 -47799722 - L3 LINE CR1 -57 1520 1450 1723 162 27 14 chr11 100983963 100984260 -47799212 - L1MB1 LINE L1 -5 6163 5863 1312 153 8 42 chr11 100984517 100984779 -47798693 + L1MB4 LINE L1 5928 6180 0 694 156 81 6 chr11 100984783 100984943 -47798529 - MER53 DNA DNA -14 175 4 1886 122 48 3 chr11 100986269 100986564 -47796908 + L1MC2 LINE L1 6027 6334 -10 348 83 0 0 chr11 100986863 100986911 -47796561 + (CA)n Simple_repeat Simple_repeat 1 48 0 259 181 28 56 chr11 100987802 100987874 -47795598 + CT-rich Low_complexity Low_complexity 4 73 0 1351 195 87 14 chr11 100987942 100988229 -47795243 + AluJb SINE Alu 4 311 -1 466 256 178 0 chr11 100988364 100988493 -47794979 - MER5A DNA MER1_type -1 188 37 507 205 166 13 chr11 100988893 100989044 -47794428 + MLT1J2 LTR MaLR 31 204 -246 810 251 128 89 chr11 100989202 100989687 -47793785 - LTR33A LTR ERVL 0 523 20 183 361 116 7 chr11 100989992 100990147 -47793325 + MIR SINE MIR 64 235 -27 823 169 8 15 chr11 100990277 100990407 -47793065 + FLAM_C SINE Alu 3 131 -2 301 258 32 54 chr11 100990441 100990534 -47792938 - L2 LINE L2 -36 3277 3187 215 316 109 57 chr11 100990623 100990816 -47792656 + L3 LINE CR1 1352 1554 -23 412 213 0 75 chr11 100990860 100990954 -47792518 + L2 LINE L2 3184 3270 -2 277 133 0 0 chr11 100991476 100991521 -47791951 + MLT2A1 LTR ERVL 400 444 0 524 186 93 8 chr11 100992239 100992357 -47791115 + MER3 DNA MER1_type 40 167 -42 1601 188 15 38 chr11 100992361 100992761 -47790711 + MER3 DNA MER1_type 2234 2624 0 466 297 36 0 chr11 100993865 100994003 -47789469 - L2 LINE L2 0 3313 3171 1396 156 45 39 chr11 100994550 100994884 -47788588 - Charlie1 DNA MER1_type -12 2749 2414 1964 158 3 0 chr11 100994910 100995207 -47788265 + AluSx SINE Alu 1 298 -14 3225 205 37 51 chr11 100995211 100995961 -47787511 + MER21B LTR ERV1 13 752 -111 4826 106 22 0 chr11 100995967 100996685 -47786787 - L1P LINE L1 -772 5374 4641 2771 187 31 4 chr11 100996686 100997232 -47786240 - Charlie1 DNA MER1_type -489 2272 1712 279 202 0 0 chr11 100997244 100997328 -47786144 + (TG)n Simple_repeat Simple_repeat 1 84 0 930 155 101 43 chr11 100997328 100997535 -47785937 - MLT1B LTR MaLR -171 219 1 1117 304 31 29 chr11 100997538 100997962 -47785510 + HAL1 LINE L1 1231 1660 -847 1800 171 0 3 chr11 100997962 100998275 -47785197 - AluJb SINE Alu 0 312 1 1117 304 31 29 chr11 100998275 100998364 -47785108 + HAL1 LINE L1 1660 1747 -760 3788 65 6 18 chr11 100998681 100999174 -47784298 + LTR15 LTR ERV1 1 487 -6 663 221 144 34 chr11 100999178 100999386 -47784086 - LTR22 LTR ERVK -14 495 265 * 676 151 59 0 chr11 100999379 100999498 -47783974 - LTR22 LTR ERVK -383 126 1 1930 148 105 0 chr11 100999538 100999843 -47783629 - MER1B DNA MER1_type 0 337 1 631 219 41 35 chr11 100999862 101000031 -47783441 + HAL1b LINE L1 743 912 -436 514 296 108 34 chr11 101000073 101000370 -47783102 + HAL1 LINE L1 2155 2473 -34 29 0 0 0 chr11 101000380 101000409 -47783063 + AT_rich Low_complexity Low_complexity 1 29 0 26 64 0 0 chr11 101003589 101003636 -47779836 + AT_rich Low_complexity Low_complexity 1 47 0 1213 203 42 8 chr11 101004086 101004323 -47779149 - MLT1J2 LTR MaLR -205 245 1 986 243 25 16 chr11 101004475 101004718 -47778754 - MIR SINE MIR -2 260 16 2459 79 3 3 chr11 101005371 101005675 -47777797 - AluSq SINE Alu -9 304 1 1645 165 69 7 chr11 101005810 101006101 -47777371 - AluJb SINE Alu -3 309 1 264 317 163 0 chr11 101006455 101006578 -47776894 + MIR SINE MIR 48 190 -72 846 140 98 7 chr11 101006662 101006805 -47776667 - AluJb SINE Alu -23 289 134 2491 130 25 42 chr11 101006897 101006950 -47776522 + MSTB LTR MaLR 1 53 -373 1978 116 10 17 chr11 101006950 101007252 -47776220 + L1PA13 LINE L1 5864 6163 0 2491 130 25 42 chr11 101007252 101007629 -47775843 + MSTB LTR MaLR 53 424 -2 233 311 14 14 chr11 101008130 101008204 -47775268 - MIR SINE MIR -111 151 78 2391 76 0 10 chr11 101008570 101008873 -47774599 + AluY SINE Alu 1 300 -11 2189 124 0 0 chr11 101009035 101009326 -47774146 + AluSp SINE Alu 1 291 -22 417 244 8 61 chr11 101010841 101010972 -47772500 + MIR SINE MIR 79 202 -60 337 264 118 18 chr11 101011008 101011118 -47772354 + MIR3 SINE MIR 73 193 -15 408 285 127 18 chr11 101011473 101011638 -47771834 + MIR SINE MIR 36 218 -44 2058 134 0 3 chr11 101011698 101012008 -47771464 - AluSx SINE Alu 0 309 1 574 236 104 22 chr11 101012688 101012870 -47770602 - MIR SINE MIR -56 206 10 1971 135 38 0 chr11 101012898 101013186 -47770286 + AluSx SINE Alu 1 299 -13 338 253 152 19 chr11 101013289 101013447 -47770025 - MIR SINE MIR -27 235 57 403 320 35 47 chr11 101013914 101014086 -47769386 + L2 LINE L2 3102 3271 -1 932 289 0 9 chr11 101014196 101014421 -47769051 - MER58A DNA MER1_type -1 223 1 239 240 20 0 chr11 101015508 101015558 -47767914 + CT-rich Low_complexity Low_complexity 2 52 0 590 304 44 17 chr11 101016608 101016787 -47766685 - MIR SINE MIR -62 146 8 1475 218 148 35 chr11 101017437 101017891 -47765581 - MLT1D LTR MaLR 0 505 1 226 337 36 0 chr11 101018926 101019009 -47764463 - MIR SINE MIR -61 147 62 1233 153 5 0 chr11 101019027 101019217 -47764255 - Tigger2 DNA MER2_type 0 2718 2528 306 78 98 0 chr11 101019307 101019358 -47764114 + Tigger2 DNA MER2_type 2506 2561 -157 * 1295 150 41 38 chr11 101019321 101019587 -47763885 - Tigger2a DNA MER2_type -157 277 11 273 180 16 33 chr11 101019748 101019809 -47763663 - MIR3 SINE MIR -135 73 14 481 286 99 0 chr11 101020325 101020496 -47762976 + MER117 DNA MER1_type 4 191 -6 824 279 135 50 chr11 101021426 101021945 -47761527 + L2 LINE L2 2148 2710 -604 533 310 66 9 chr11 101022296 101022509 -47760963 - MIR SINE MIR -24 238 14 613 246 78 18 chr11 101023554 101023721 -47759751 - MIR SINE MIR 0 262 86 226 300 34 12 chr11 101024029 101024113 -47759359 - MIR SINE MIR -34 174 79 327 304 68 7 chr11 101024235 101024383 -47759089 + MER103 DNA DNA 8 164 -2 246 32 0 0 chr11 101024507 101024538 -47758934 + (TCTCCC)n Simple_repeat Simple_repeat 1 31 0 1494 41 67 0 chr11 101024538 101024733 -47758739 + SVA Other Other 57 264 -1122 317 232 177 77 chr11 101024946 101025166 -47758306 - MLT1K LTR MaLR -205 383 142 292 298 62 25 chr11 101025134 101025295 -47758177 - MLT1K LTR MaLR -346 242 76 * 275 297 171 0 chr11 101025515 101025626 -47757846 + L2 LINE L2 3182 3311 -2 1025 167 19 0 chr11 101026442 101026604 -47756868 - AluJb SINE Alu -13 299 135 1525 171 50 14 chr11 101026604 101026884 -47756588 - AluJb SINE Alu -22 290 1 201 226 68 83 chr11 101027138 101027271 -47756201 + MIR SINE MIR 75 205 -57 209 327 9 18 chr11 101027706 101027762 -47755710 + CT-rich Low_complexity Low_complexity 2 58 -52 2112 127 3 13 chr11 101027762 101028076 -47755396 - AluSx SINE Alu -1 311 1 209 327 9 18 chr11 101028076 101028129 -47755343 + CT-rich Low_complexity Low_complexity 58 110 0 3417 78 20 0 chr11 101028883 101029331 -47754141 - L1PA13 LINE L1 -4 6159 5703 1495 213 108 31 chr11 101029536 101030004 -47753468 - L1MB7 LINE L1 -19 6976 6474 1769 181 0 7 chr11 101030046 101030339 -47753133 - AluJo SINE Alu -21 291 1 2206 122 3 3 chr11 101030516 101030827 -47752645 + AluSx SINE Alu 1 311 -1 1887 104 0 92 chr11 101030856 101031191 -47752281 + L1M1 LINE L1 5355 5658 -645 193 255 0 39 chr11 101031198 101031249 -47752223 - L2 LINE L2 -20 3293 3245 3011 221 43 36 chr11 101031308 101032214 -47751258 - L1MB7 LINE L1 -1286 5671 4760 * 8979 188 73 11 chr11 101032200 101035773 -47747699 - L1MA3 LINE L1 0 6305 2506 2384 257 62 28 chr11 101037709 101038337 -47745135 - L1MB7 LINE L1 -3648 3309 2704 459 0 0 0 chr11 101038337 101038388 -47745084 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 2384 257 62 28 chr11 101038388 101039697 -47743775 - L1MB7 LINE L1 -4253 2704 1193 27 0 0 0 chr11 101039697 101039724 -47743748 + AT_rich Low_complexity Low_complexity 1 27 0 305 243 68 10 chr11 101039752 101039855 -47743617 - L1MB7 LINE L1 -5657 1198 1090 389 289 80 37 chr11 101039861 101040048 -47743424 - L1MB7 LINE L1 -6653 206 12 30 27 0 0 chr11 101040365 101040402 -47743070 + AT_rich Low_complexity Low_complexity 1 37 0 704 206 0 20 chr11 101040402 101040548 -47742924 - FLAM_C SINE Alu 0 143 1 420 341 209 15 chr11 101040712 101041175 -47742297 - L1MC4a LINE L1 -1760 6048 5496 486 0 0 0 chr11 101041772 101041826 -47741646 + (TA)n Simple_repeat Simple_repeat 1 54 0 247 381 10 21 chr11 101041826 101041923 -47741549 - L2 LINE L2 -43 3229 3134 230 146 0 21 chr11 101041960 101042008 -47741464 + L1MC4 LINE L1 6657 6703 -1339 211 263 0 18 chr11 101042009 101042066 -47741406 + (TA)n Simple_repeat Simple_repeat 1 56 0 774 291 20 8 chr11 101042105 101042349 -47741123 - MIR SINE MIR -14 248 2 1229 361 90 10 chr11 101042412 101043210 -47740262 - L2 LINE L2 -494 2820 1959 23 0 0 0 chr11 101043498 101043521 -47739951 + AT_rich Low_complexity Low_complexity 1 23 0 260 330 71 0 chr11 101043929 101044041 -47739431 + MIR SINE MIR 137 256 -6 508 335 104 5 chr11 101044908 101045120 -47738352 - MIR SINE MIR -19 243 11 22 0 0 0 chr11 101045155 101045177 -47738295 + AT_rich Low_complexity Low_complexity 1 22 0 190 311 16 0 chr11 101046577 101046638 -47736834 - L2 LINE L2 -5 3267 3206 407 240 108 8 chr11 101046964 101047093 -47736379 - MIR3 SINE MIR -1 207 66 236 200 43 14 chr11 101047270 101047340 -47736132 + GA-rich Low_complexity Low_complexity 4 75 0 1670 168 13 45 chr11 101047578 101047887 -47735585 + AluJo SINE Alu 3 301 -11 2078 112 3 7 chr11 101047958 101048243 -47735229 + AluSx SINE Alu 12 295 -17 21 0 0 0 chr11 101048282 101048303 -47735169 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr11 101048346 101048384 -47735088 + AT_rich Low_complexity Low_complexity 1 38 0 301 383 47 27 chr11 101048706 101048855 -47734617 - L2 LINE L2 -20 3252 3101 339 324 127 12 chr11 101049766 101049939 -47733533 - L2 LINE L2 -211 3061 2869 313 346 22 3 chr11 101049918 101050104 -47733368 - L3 LINE CR1 -2 1575 1336 * 869 144 0 0 chr11 101050977 101051095 -47732377 - FLAM_C SINE Alu -25 118 1 743 267 80 49 chr11 101051143 101051831 -47731641 - L1ME4a LINE L1 -119 6002 5294 281 324 14 49 chr11 101052439 101052581 -47730891 - L2 LINE L2 0 3313 3177 270 95 0 0 chr11 101053004 101053046 -47730426 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 217 305 78 43 chr11 101053427 101053568 -47729904 - L2 LINE L2 -248 3065 2920 534 307 113 5 chr11 101055152 101055364 -47728108 + MIR SINE MIR 22 256 -6 812 201 52 11 chr11 101055947 101056121 -47727351 + AluJo SINE Alu 122 302 -10 396 312 16 24 chr11 101056283 101056408 -47727064 + MIR SINE MIR 2 125 -137 385 179 393 0 chr11 101057392 101057504 -47725968 + MER5B DNA MER1_type 23 178 0 316 314 17 17 chr11 101057916 101058076 -47725396 - MIR SINE MIR -66 142 20 200 256 0 0 chr11 101058367 101058410 -47725062 - L2 LINE L2 -8 3305 3263 1379 190 95 29 chr11 101058640 101059019 -47724453 - L1MC4 LINE L1 -6 8036 7633 1417 83 29 0 chr11 101059060 101059264 -47724208 - L1MA2 LINE L1 0 6304 6095 800 275 190 23 chr11 101059273 101059821 -47723651 + L2 LINE L2 2669 3310 -3 288 0 0 0 chr11 101060119 101060151 -47723321 + (TA)n Simple_repeat Simple_repeat 2 33 0 1168 246 76 52 chr11 101060159 101060619 -47722853 - MLT2B1 LTR ERVL -48 472 2 700 322 34 4 chr11 101060777 101061013 -47722459 - MIR SINE MIR 0 262 20 6309 100 10 3 chr11 101061594 101063143 -47720329 + L1PA10 LINE L1 4615 6168 0 252 0 0 0 chr11 101063432 101063460 -47720012 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 7039 52 3 3 chr11 101063461 101064549 -47718923 - L1PA5 LINE L1 -13 6141 5057 275 227 2 0 chr11 101064757 101064838 -47718634 - L1MC4 LINE L1 -6 8036 7721 503 236 28 0 chr11 101064990 101065096 -47718376 - FLAM_A SINE Alu -32 110 2 826 159 114 131 chr11 101065100 101065390 -47718082 - L1MC4 LINE L1 -143 7899 7615 432 236 51 70 chr11 101065449 101065606 -47717866 + MER63A DNA MER1_type 57 210 0 3226 177 49 61 chr11 101065617 101065648 -47717824 - L1MC4 LINE L1 -442 7600 7570 185 0 0 39 chr11 101065648 101065674 -47717798 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 3226 177 49 61 chr11 101065674 101066559 -47716913 - L1MC4 LINE L1 -472 7570 6695 288 0 0 0 chr11 101066560 101066592 -47716880 + (CA)n Simple_repeat Simple_repeat 2 33 0 603 301 139 3 chr11 101066624 101066926 -47716546 + LTR16A LTR ERVL 105 447 -3 201 74 0 0 chr11 101066926 101066953 -47716519 + (CA)n Simple_repeat Simple_repeat 2 28 0 240 273 15 0 chr11 101066977 101067043 -47716429 - L1MC4a LINE L1 -1221 6587 6521 449 186 21 0 chr11 101067923 101068020 -47715452 - MLT2E LTR ERVL 0 628 530 193 312 91 48 chr11 101068031 101068217 -47715255 - L2 LINE L2 -1613 1701 1508 396 0 0 0 chr11 101069578 101069622 -47713850 + (TG)n Simple_repeat Simple_repeat 1 44 0 3753 116 65 11 chr11 101069880 101070303 -47713169 - MER39B LTR ERV1 0 653 185 2034 135 0 3 chr11 101070303 101070606 -47712866 + AluSx SINE Alu 1 302 -10 3753 116 65 11 chr11 101070606 101070802 -47712670 - MER39B LTR ERV1 -468 185 1 22 0 0 0 chr11 101071377 101071399 -47712073 + AT_rich Low_complexity Low_complexity 1 22 0 2340 81 0 14 chr11 101071406 101071542 -47711930 + AluSp SINE Alu 1 137 -176 2188 116 0 10 chr11 101071542 101071852 -47711620 + AluSc SINE Alu 1 307 -2 2340 81 0 14 chr11 101071852 101072012 -47711460 + AluSp SINE Alu 137 293 -20 186 71 0 0 chr11 101072205 101072233 -47711239 + (TTTTTA)n Simple_repeat Simple_repeat 2 29 0 722 233 0 0 chr11 101073109 101073275 -47710197 - FRAM SINE Alu 0 166 1 475 295 0 26 chr11 101073282 101073438 -47710034 - L3 LINE CR1 -685 892 741 1241 169 28 16 chr11 101073629 101073878 -47709594 + L1PA8 LINE L1 5916 6167 -5 232 248 41 41 chr11 101073879 101074000 -47709472 + L1ME3A LINE L1 5828 5948 -222 2917 214 29 58 chr11 101075189 101075678 -47707794 - L1ME1 LINE L1 -4 6162 5660 2017 148 0 0 chr11 101075678 101075976 -47707496 + AluSx SINE Alu 1 298 -14 2917 214 29 58 chr11 101075976 101076348 -47707124 - L1ME1 LINE L1 -506 5660 5327 1620 201 10 13 chr11 101076348 101076647 -47706825 + AluJo SINE Alu 1 298 -14 2917 214 29 58 chr11 101076647 101076709 -47706763 - L1ME1 LINE L1 -839 5327 5265 2318 116 0 0 chr11 101076814 101077116 -47706356 - AluSq SINE Alu -11 302 1 658 199 124 26 chr11 101077284 101077510 -47705962 - MER112 DNA MER1_type -6 254 7 456 279 58 47 chr11 101077549 101077721 -47705751 + MIR SINE MIR 3 176 -86 275 382 69 7 chr11 101077730 101077874 -47705598 - MER91A DNA MER1_type -25 171 19 908 138 185 0 chr11 101078072 101078267 -47705205 + L1MB5 LINE L1 5729 5959 -215 1784 172 36 3 chr11 101078414 101078716 -47704756 - AluJo SINE Alu 0 312 1 1648 220 8 0 chr11 101078716 101079116 -47704356 - L1P LINE L1 -815 5331 4929 2272 107 39 0 chr11 101079120 101079475 -47703997 + L1PA16 LINE L1 5590 5958 -208 215 213 43 0 chr11 101079712 101079759 -47703713 - L3 LINE CR1 -192 1385 1337 1176 152 30 0 chr11 101079794 101079991 -47703481 + L1PA16 LINE L1 5955 6157 -9 342 213 67 0 chr11 101080573 101080648 -47702824 + MIR SINE MIR 66 145 -63 1659 162 3 40 chr11 101080653 101080955 -47702517 + AluJo SINE Alu 1 291 -21 1737 141 54 4 chr11 101080956 101081233 -47702239 + AluJb SINE Alu 1 291 -21 386 282 22 77 chr11 101081360 101081541 -47701931 - MIR SINE MIR -86 176 6 311 240 215 8 chr11 101081997 101082118 -47701354 + L3 LINE CR1 1240 1385 -192 180 193 53 88 chr11 101082291 101082348 -47701124 + L2 LINE L2 3209 3263 -9 399 275 11 0 chr11 101082364 101082455 -47701017 - MIR SINE MIR -25 237 146 226 274 0 0 chr11 101082848 101082899 -47700573 + (TA)n Simple_repeat Simple_repeat 2 52 0 350 315 83 42 chr11 101083521 101083737 -47699735 + L3b LINE CR1 1136 1360 -223 222 180 27 0 chr11 101084085 101084141 -47699331 + MIR SINE MIR 105 164 -64 596 175 13 0 chr11 101084141 101084295 -47699177 + CT-rich Low_complexity Low_complexity 4 159 0 786 159 159 0 chr11 101084298 101084443 -47699029 - AluSg/x SINE Alu -4 305 138 618 112 17 9 chr11 101084581 101084697 -47698775 + (TTCC)n Simple_repeat Simple_repeat 4 120 0 31 0 0 0 chr11 101085828 101085859 -47697613 + AT_rich Low_complexity Low_complexity 1 31 0 2168 117 0 7 chr11 101086024 101086324 -47697148 + AluSq SINE Alu 1 298 -15 1049 193 37 10 chr11 101087334 101087595 -47695877 - MLT2B1 LTR ERVL -191 273 1 18130 172 46 14 chr11 101087601 101090690 -47692782 - ERVL-B1 LTR ERVL -14 5750 2565 1670 194 110 37 chr11 101092143 101092607 -47690865 - MLT1D LTR MaLR -7 498 1 592 296 58 84 chr11 101094484 101094829 -47688643 - MLT1K LTR MaLR -106 482 147 26 0 0 0 chr11 101094861 101094887 -47688585 + AT_rich Low_complexity Low_complexity 1 26 0 512 199 9 0 chr11 101094895 101095340 -47688132 + (TTAA)n Simple_repeat Simple_repeat 1 449 0 1894 196 67 0 chr11 101095365 101095707 -47687765 - MLT1A1 LTR MaLR 0 365 1 503 302 36 16 chr11 101095854 101096046 -47687426 + MIR SINE MIR 12 207 -55 181 293 40 61 chr11 101096051 101096108 -47687364 - L2 LINE L2 -18 3295 3239 348 64 0 0 chr11 101096108 101096155 -47687317 + (CA)n Simple_repeat Simple_repeat 1 47 0 181 293 40 61 chr11 101096155 101096196 -47687276 - L2 LINE L2 -74 3239 3199 578 311 93 18 chr11 101096386 101096611 -47686861 - MIR SINE MIR -8 254 13 1981 154 9 119 chr11 101096999 101097100 -47686372 + MLT1B LTR MaLR 3 114 -276 2077 123 3 10 chr11 101097100 101097400 -47686072 + AluSx SINE Alu 1 298 -14 1981 154 9 119 chr11 101097400 101097490 -47685982 + MLT1B LTR MaLR 114 212 -178 1587 206 0 25 chr11 101097490 101097810 -47685662 + AluJo SINE Alu 1 312 0 1981 154 9 119 chr11 101097810 101098053 -47685419 + MLT1B LTR MaLR 212 390 0 385 254 31 47 chr11 101098273 101098466 -47685006 - MER117 DNA MER1_type 0 197 8 778 216 107 87 chr11 101098608 101098918 -47684554 + MLT1J LTR MaLR 196 511 0 366 200 145 171 chr11 101099027 101099241 -47684231 + MLT1L LTR MaLR 118 336 -279 1873 163 7 0 chr11 101099241 101099529 -47683943 + AluJo SINE Alu 14 303 -9 366 200 145 171 chr11 101099529 101099707 -47683765 + MLT1L LTR MaLR 336 604 -11 1964 185 79 9 chr11 101099786 101100050 -47683422 - MLT1C LTR MaLR 0 467 160 438 20 0 0 chr11 101100050 101100101 -47683371 + (TG)n Simple_repeat Simple_repeat 2 52 0 1964 185 79 9 chr11 101100101 101100268 -47683204 - MLT1C LTR MaLR -307 160 6 631 266 46 29 chr11 101101204 101101556 -47681916 - L1ME2 LINE L1 -219 5945 5594 503 297 87 11 chr11 101101556 101101822 -47681650 - L1ME2 LINE L1 -978 5168 4883 245 314 93 29 chr11 101102253 101102393 -47681079 + MIR SINE MIR 110 258 -4 1194 151 35 40 chr11 101102533 101102812 -47680660 - THE1C LTR MaLR 0 375 33 4127 77 30 38 chr11 101102812 101103370 -47680102 + MER41A LTR ERV1 1 554 0 1194 151 35 40 chr11 101103370 101103403 -47680069 - THE1C LTR MaLR -342 33 1 906 249 56 112 chr11 101103438 101103937 -47679535 + MLT1H LTR MaLR 75 545 -4 700 101 0 10 chr11 101105608 101105707 -47677765 + MER4A LTR ERV1 1 98 -566 1824 127 162 73 chr11 101105707 101106078 -47677394 + MER4A LTR ERV1 261 664 0 288 0 0 0 chr11 101106432 101106464 -47677008 + (TG)n Simple_repeat Simple_repeat 2 33 0 9028 106 30 65 chr11 101106620 101107442 -47676030 - Tigger1 DNA MER2_type 0 2418 1671 1830 178 0 3 chr11 101107442 101107735 -47675737 - AluJb SINE Alu -20 292 1 9028 106 30 65 chr11 101107735 101108419 -47675053 - Tigger1 DNA MER2_type -747 1671 965 3947 118 25 31 chr11 101108513 101109117 -47674355 + MER4A LTR ERV1 1 600 0 1096 116 23 97 chr11 101109145 101109204 -47674268 + MER3 DNA MER1_type 10 72 -137 4690 174 57 18 chr11 101109204 101110034 -47673438 + MER21B LTR ERV1 1 862 -1 1096 116 23 97 chr11 101110034 101110190 -47673282 + MER3 DNA MER1_type 72 209 0 228 272 0 12 chr11 101111360 101111441 -47672031 - L1MC4 LINE L1 -1339 6703 6624 265 254 0 0 chr11 101111441 101111496 -47671976 - MIR SINE MIR -89 173 119 192 278 56 67 chr11 101113043 101113133 -47670339 - L3 LINE CR1 -27 1550 1462 232 341 74 7 chr11 101113389 101113528 -47669944 - MIR SINE MIR -51 157 3 201 211 10 106 chr11 101113693 101113797 -47669675 + GA-rich Low_complexity Low_complexity 3 96 0 384 22 0 0 chr11 101114001 101114046 -47669426 + (CA)n Simple_repeat Simple_repeat 2 46 0 1641 106 22 0 chr11 101114144 101114371 -47669101 - AluSg/x SINE Alu 0 312 81 2019 78 16 0 chr11 101114371 101114628 -47668844 - LTR8 LTR ERV1 -430 261 1 1962 204 0 48 chr11 101114671 101115064 -47668408 - MLT1A2 LTR MaLR 0 374 1 2208 117 7 0 chr11 101115068 101115367 -47668105 - AluSx SINE Alu -11 301 1 645 110 0 0 chr11 101115648 101115748 -47667724 + (CA)n Simple_repeat Simple_repeat 1 100 0 1996 138 34 45 chr11 101117311 101117667 -47665805 + THE1B LTR MaLR 1 352 -12 295 344 64 0 chr11 101118057 101118182 -47665290 + L2 LINE L2 3140 3272 0 24 0 0 0 chr11 101118366 101118390 -47665082 + AT_rich Low_complexity Low_complexity 1 24 0 234 0 0 0 chr11 101118637 101118663 -47664809 + (TC)n Simple_repeat Simple_repeat 1 26 0 398 283 10 10 chr11 101119443 101119542 -47663930 + MER5B DNA MER1_type 1 99 -79 289 41 82 0 chr11 101119937 101119986 -47663486 + A-rich Low_complexity Low_complexity 3 55 0 339 231 120 60 chr11 101119988 101120105 -47663367 - MER5B DNA MER1_type -48 130 7 285 273 137 35 chr11 101120163 101120337 -47663135 + MIR SINE MIR 39 230 -32 352 227 213 47 chr11 101121076 101121169 -47662303 + MER5A DNA MER1_type 1 77 -112 2131 134 0 10 chr11 101121169 101121476 -47661996 - AluSx SINE Alu 0 312 9 352 227 213 47 chr11 101121476 101121532 -47661940 + MER5A DNA MER1_type 77 175 -14 223 250 14 56 chr11 101121542 101121614 -47661858 + MER5A DNA MER1_type 121 189 0 185 296 10 71 chr11 101121669 101121767 -47661705 - MIR SINE MIR -81 127 36 445 197 47 55 chr11 101122413 101122540 -47660932 + MIR SINE MIR 91 216 -46 2270 116 7 0 chr11 101122660 101123003 -47660469 + AluSx SINE Alu 1 345 0 354 143 0 0 chr11 101123184 101123247 -47660225 + (A)n Simple_repeat Simple_repeat 1 63 0 566 316 62 14 chr11 101124712 101124921 -47658551 + MLT1I LTR MaLR 169 387 -22 1289 121 0 16 chr11 101125292 101125474 -47657998 - AluJb SINE Alu -5 307 129 2091 136 13 0 chr11 101125735 101126043 -47657429 + AluSx SINE Alu 1 312 0 2252 106 0 0 chr11 101126119 101126412 -47657060 - AluSx SINE Alu -19 293 1 1379 121 10 0 chr11 101126497 101126696 -47656776 - L1P4 LINE L1 -582 5584 5384 479 130 76 0 chr11 101126945 101127037 -47656435 + L1MB4 LINE L1 6073 6171 -9 21 36 0 0 chr11 101127891 101127919 -47655553 + AT_rich Low_complexity Low_complexity 1 28 0 189 317 110 12 chr11 101128069 101128151 -47655321 - L2 LINE L2 -57 3256 3167 4914 110 28 6 chr11 101128322 101129031 -47654441 - L1PA16 LINE L1 -9 6157 5433 8437 100 16 6 chr11 101179031 101180240 -47603232 + HERVH LTR ERV1 1766 2987 -4726 2590 102 8 0 chr11 101180234 101180606 -47602866 + HERVH LTR ERV1 3140 3514 -4199 * 306 261 158 54 chr11 101180830 101181071 -47602401 + L2 LINE L2 3003 3268 -4 784 209 157 23 chr11 101182306 101182679 -47600793 + Charlie4 DNA MER1_type 1 1884 -77 1116 216 11 26 chr11 101182679 101182947 -47600525 + L1MD3 LINE L1 7677 7940 -55 277 284 88 20 chr11 101183151 101183299 -47600173 + MIR SINE MIR 31 188 -74 370 250 125 0 chr11 101183345 101183465 -47600007 - MIR SINE MIR -18 244 110 412 214 34 11 chr11 101183772 101183861 -47599611 - MER58B DNA MER1_type -3 338 248 253 239 68 57 chr11 101184098 101184186 -47599286 + MIR3 SINE MIR 109 197 -11 252 333 0 0 chr11 101185413 101185509 -47597963 - MIR SINE MIR 0 262 167 226 279 15 0 chr11 101185673 101185741 -47597731 - MIR SINE MIR -11 251 183 213 320 0 27 chr11 101186842 101186992 -47596480 + CT-rich Low_complexity Low_complexity 4 149 0 187 324 88 20 chr11 101189023 101189125 -47594347 - L2 LINE L2 -27 3245 3137 341 292 69 28 chr11 101190595 101190739 -47592733 + L2 LINE L2 3163 3312 -1 1297 203 21 0 chr11 101192449 101192686 -47590786 - MLT1E LTR MaLR 0 593 352 541 134 131 29 chr11 101192683 101192820 -47590652 - MLT1E LTR MaLR -438 155 61 * 2232 104 0 10 chr11 101195557 101195866 -47587606 + AluSg SINE Alu 1 306 -4 457 130 282 15 chr11 101195882 101196013 -47587459 - MER33 DNA MER1_type -5 358 193 9049 42 10 0 chr11 101196019 101197841 -47585631 - L1PA5 LINE L1 -5 6149 4316 6587 50 11 2 chr11 101197841 101198654 -47584818 + L1P LINE L1 3460 4279 -1867 727 176 79 18 chr11 101198654 101198819 -47584653 - MER33 DNA MER1_type -144 180 6 1535 138 28 4 chr11 101199216 101199463 -47584009 - MER31A LTR ERV1 0 485 233 214 273 182 10 chr11 101200021 101200120 -47583352 - L2 LINE L2 0 3313 3198 211 276 172 0 chr11 101200186 101200273 -47583199 + MIR3 SINE MIR 103 204 -4 254 250 188 0 chr11 101200332 101200412 -47583060 - MIR SINE MIR -6 256 162 379 291 174 10 chr11 101200441 101200637 -47582835 + MIR SINE MIR 18 245 -17 240 303 218 18 chr11 101200743 101200908 -47582564 + MIR SINE MIR 7 204 -58 1283 172 141 53 chr11 101201587 101201906 -47581566 - MER7A DNA MER2_type -1 345 1 298 273 55 18 chr11 101202287 101202397 -47581075 + MIR SINE MIR 146 259 -3 740 148 0 0 chr11 101202460 101202568 -47580904 - AluSp/q SINE Alu -4 309 202 553 301 17 11 chr11 101202960 101203136 -47580336 + MER5A DNA MER1_type 13 189 0 2648 86 23 3 chr11 101203568 101203916 -47579556 + THE1A LTR MaLR 1 355 0 1777 199 30 19 chr11 101203987 101204348 -47579124 - MLT1A1 LTR MaLR 0 365 1 215 125 0 0 chr11 101204395 101204427 -47579045 - MIR SINE MIR -112 150 119 234 279 116 54 chr11 101204813 101204942 -47578530 + MIR SINE MIR 10 146 -116 352 293 122 12 chr11 101205013 101205177 -47578295 + MER5A DNA MER1_type 2 183 -6 340 250 125 53 chr11 101206392 101206600 -47576872 + MIR SINE MIR 10 232 -30 2073 133 3 10 chr11 101206984 101207286 -47576186 + AluSq SINE Alu 9 308 -5 792 254 229 0 chr11 101207640 101207915 -47575557 + MLT1I LTR MaLR 72 409 0 222 373 127 9 chr11 101207946 101208056 -47575416 + L2 LINE L2 3125 3247 -25 243 103 0 0 chr11 101208298 101208337 -47575135 + (TCCA)n Simple_repeat Simple_repeat 4 42 0 347 273 88 62 chr11 101208360 101208587 -47574885 - L2 LINE L2 -1 3312 3080 438 294 98 22 chr11 101208606 101208790 -47574682 + MIR SINE MIR 10 207 -55 700 184 12 71 chr11 101208801 101208969 -47574503 + MLT1A2 LTR MaLR 213 370 -4 210 250 0 0 chr11 101209088 101209128 -47574344 - MIR3 SINE MIR -50 158 119 21 57 0 0 chr11 101209851 101209886 -47573586 + AT_rich Low_complexity Low_complexity 1 35 0 443 246 100 9 chr11 101209919 101210029 -47573443 + L1MA8 LINE L1 5 124 -6017 452 118 0 0 chr11 101210029 101210097 -47573375 - AluS SINE Alu -10 300 233 5595 232 81 24 chr11 101210098 101210177 -47573295 + L1MA8 LINE L1 113 186 -6025 1700 187 7 13 chr11 101210177 101210309 -47573163 + AluJo SINE Alu 1 132 -180 180 0 0 0 chr11 101210309 101210329 -47573143 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1700 187 7 13 chr11 101210329 101210501 -47572971 + AluJo SINE Alu 132 303 -9 5595 232 81 24 chr11 101210501 101212257 -47571215 + L1MA8 LINE L1 186 2044 -4167 11767 149 54 24 chr11 101212334 101213302 -47570170 + L1MA8 LINE L1 3010 3947 -2408 2211 126 0 0 chr11 101213302 101213603 -47569869 - AluSq SINE Alu -12 301 1 11767 149 54 24 chr11 101213603 101215391 -47568081 + L1MA8 LINE L1 3947 5680 -675 276 30 0 0 chr11 101215391 101215424 -47568048 + (CA)n Simple_repeat Simple_repeat 2 34 0 11767 149 54 24 chr11 101215424 101215739 -47567733 + L1MA8 LINE L1 5680 5984 -371 7385 74 7 1 chr11 101215739 101217435 -47566037 + L1PA11 LINE L1 4470 6173 -1 11767 149 54 24 chr11 101217435 101217588 -47565884 + L1MA8 LINE L1 5984 6334 -21 250 303 50 10 chr11 101218506 101218605 -47564867 - L3 LINE CR1 -470 1107 1005 741 274 50 0 chr11 101219469 101219648 -47563824 + MER5A DNA MER1_type 1 188 -1 1609 170 26 0 chr11 101219669 101219934 -47563538 - AluJo SINE Alu -34 278 7 219 260 20 0 chr11 101220956 101221006 -47562466 - MIR3 SINE MIR -1 207 157 265 276 98 65 chr11 101221195 101221318 -47562154 + MER91C DNA MER1_type 9 135 -5 299 277 189 31 chr11 101221884 101222043 -47561429 - MIR SINE MIR -42 220 37 227 371 21 0 chr11 101222133 101222230 -47561242 + MLT1J1 LTR MaLR 64 162 -284 5863 165 30 4 chr11 101222315 101224294 -47559178 - L1PA16 LINE L1 -10 6156 4123 430 286 5 21 chr11 101224316 101224497 -47558975 + MLT1I LTR MaLR 275 408 -1 521 275 42 0 chr11 101225539 101225659 -47557813 - L2 LINE L2 -6 3266 3142 6248 148 20 32 chr11 101225868 101226952 -47556520 - MER11C LTR ERVK 0 1071 1 493 286 56 12 chr11 101228141 101228302 -47555170 + MIR3 SINE MIR 20 187 -21 1179 227 96 26 chr11 101228335 101228678 -47554794 + MLT2C1 LTR ERVL 1 367 -30 509 277 25 0 chr11 101228729 101228848 -47554624 + MIR SINE MIR 48 169 -93 186 212 0 0 chr11 101229004 101229037 -47554435 + L2 LINE L2 3219 3251 -21 2847 208 108 64 chr11 101229966 101230251 -47553221 - L1MC5 LINE L1 -49 7912 7641 507 75 32 0 chr11 101230251 101230345 -47553127 + (TAGA)n Simple_repeat Simple_repeat 4 100 0 2847 208 108 64 chr11 101230345 101230628 -47552844 - L1MC5 LINE L1 -320 7641 7372 252 0 0 0 chr11 101230628 101230656 -47552816 + (TG)n Simple_repeat Simple_repeat 1 28 0 2847 208 108 64 chr11 101230656 101231160 -47552312 - L1MC5 LINE L1 -589 7372 6792 1828 201 49 19 chr11 101231162 101231584 -47551888 - MLT1C LTR MaLR 0 467 23 269 301 43 0 chr11 101232121 101232214 -47551258 + MIR SINE MIR 65 161 -101 425 240 66 25 chr11 101232228 101232349 -47551123 - L2 LINE L2 -3 3310 3185 33 0 0 0 chr11 101233154 101233187 -47550285 + AT_rich Low_complexity Low_complexity 1 33 0 399 336 72 83 chr11 101234072 101234527 -47548945 - L2 LINE L2 -18 3254 2805 * 449 285 65 0 chr11 101234524 101234647 -47548825 + MIR SINE MIR 95 225 -37 2299 250 88 2 chr11 101234938 101235573 -47547899 - L1ME3A LINE L1 -5 6165 5476 211 316 140 44 chr11 101235704 101235932 -47547540 - L2 LINE L2 -2 3270 3021 2241 83 25 9 chr11 101235960 101236287 -47547185 + THE1C LTR MaLR 44 375 0 1784 192 3 0 chr11 101236287 101236610 -47546862 - MLT1A1 LTR MaLR -41 324 1 320 326 34 34 chr11 101236610 101236788 -47546684 - L3 LINE CR1 -437 1140 963 667 243 21 0 chr11 101236809 101236977 -47546495 + MLT1J2 LTR MaLR 33 247 -264 253 270 103 29 chr11 101237005 101237179 -47546293 + MLT1J2 LTR MaLR 264 450 0 21 36 0 0 chr11 101237970 101237998 -47545474 + AT_rich Low_complexity Low_complexity 1 28 0 214 197 0 0 chr11 101238014 101238051 -47545421 - MIR SINE MIR -114 148 113 3027 55 3 0 chr11 101238487 101238871 -47544601 - L1PA4 LINE L1 -1 6154 5770 40429 37 24 0 chr11 101238871 101244875 -47538597 - L1PA2 LINE L1 -3 6152 1 18505 33 3 1 chr11 101244875 101247625 -47535847 - L1PA4 LINE L1 -372 5782 3028 587 225 0 58 chr11 101247627 101247765 -47535707 - MER5B DNA MER1_type -48 130 1 3554 87 27 25 chr11 101249226 101249787 -47533685 + L1MA3 LINE L1 5744 6305 0 632 236 17 53 chr11 101249788 101250069 -47533403 + L1ME2 LINE L1 5900 6154 -12 1240 224 102 76 chr11 101250069 101250597 -47532875 + MLT1F LTR MaLR 1 542 0 384 354 43 18 chr11 101251118 101251282 -47532190 + MIR SINE MIR 21 188 -74 1320 168 92 7 chr11 101251283 101251587 -47531885 + L1ME1 LINE L1 5832 6161 -5 4686 102 52 95 chr11 101252858 101253499 -47529973 - Tigger3b DNA MER2_type -1797 1231 564 1876 146 11 7 chr11 101253499 101253786 -47529686 + AluSx SINE Alu 1 288 -24 4686 102 52 95 chr11 101253786 101253892 -47529580 - Tigger3b DNA MER2_type -2464 564 455 2208 103 7 3 chr11 101253892 101254192 -47529280 + AluY SINE Alu 1 301 -10 4686 102 52 95 chr11 101254192 101254436 -47529036 - Tigger3b DNA MER2_type -2573 455 281 37913 68 12 10 chr11 101254446 101260562 -47522910 + L1PA5 LINE L1 2 6133 -21 1648 151 46 3 chr11 101260562 101260866 -47522606 - Tigger3b DNA MER2_type -914 317 1 480 253 167 23 chr11 101260899 101261073 -47522399 - MIR SINE MIR 0 262 64 236 193 104 67 chr11 101262180 101262315 -47521157 - L1MC/D LINE L1 -2325 5483 5344 406 289 57 61 chr11 101262322 101262457 -47521015 - L1MC/D LINE L1 -846 5300 5165 2361 88 3 7 chr11 101262457 101262762 -47520710 - AluSc SINE Alu -5 304 1 406 289 57 61 chr11 101262762 101262889 -47520583 - L1MC/D LINE L1 -981 5165 5039 635 329 81 10 chr11 101262977 101263284 -47520188 + L2 LINE L2 1043 1371 -1943 811 225 48 9 chr11 101263284 101263511 -47519961 - L1MB2 LINE L1 -1 6170 5935 11036 163 42 8 chr11 101263522 101266162 -47517310 - L1MA6 LINE L1 0 6504 3732 2480 62 7 13 chr11 101266162 101266467 -47517005 - AluY SINE Alu -8 303 1 11036 163 42 8 chr11 101266467 101267066 -47516406 - L1MA6 LINE L1 -2772 3732 3155 1742 192 47 47 chr11 101267069 101267663 -47515809 - L1MA6 LINE L1 -3968 2382 1789 2026 252 49 9 chr11 101267676 101268457 -47515015 - L1MA6 LINE L1 -4467 1884 1094 728 332 35 26 chr11 101268821 101269279 -47514193 - L1MA6 LINE L1 -5819 462 1 * 5619 196 37 33 chr11 101269276 101270967 -47512505 - L1MB2 LINE L1 -211 5960 4278 207 0 0 0 chr11 101270967 101270990 -47512482 + (TG)n Simple_repeat Simple_repeat 2 24 0 5619 196 37 33 chr11 101270990 101271230 -47512242 - L1MB2 LINE L1 -1893 4278 4041 1441 212 14 18 chr11 101271230 101271513 -47511959 - AluJo SINE Alu -30 282 1 5619 196 37 33 chr11 101271513 101271865 -47511607 - L1MB2 LINE L1 -2130 4041 3661 12633 185 13 26 chr11 101272001 101274176 -47509296 + L1PB1 LINE L1 2232 4435 -1716 276 30 0 0 chr11 101274176 101274209 -47509263 + (CA)n Simple_repeat Simple_repeat 1 33 0 12633 185 13 26 chr11 101274209 101274930 -47508542 + L1PB1 LINE L1 4435 5164 -987 186 43 0 0 chr11 101274930 101274953 -47508519 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 12633 185 13 26 chr11 101274953 101275307 -47508165 + L1PB1 LINE L1 5164 5521 -630 7679 80 12 1 chr11 101275307 101277163 -47506309 + L1PA7 LINE L1 4288 6151 -3 12633 185 13 26 chr11 101277163 101277611 -47505861 + L1PB1 LINE L1 5521 5885 -266 429 99 9 135 chr11 101277736 101277847 -47505625 - MER33 DNA MER1_type -1 323 227 1057 164 0 0 chr11 101277847 101278012 -47505460 - FRAM SINE Alu -8 168 4 836 176 113 0 chr11 101278015 101278219 -47505253 - MER33 DNA MER1_type -89 235 9 382 203 0 0 chr11 101278243 101278312 -47505160 - AluJ/FRAM SINE Alu -9 293 225 637 281 88 31 chr11 101279064 101279324 -47504148 - MLT1G1 LTR MaLR 0 595 321 280 295 72 24 chr11 101279440 101279646 -47503826 - MLT1G1 LTR MaLR -311 244 31 190 390 38 5 chr11 101279690 101279900 -47503572 + L2 LINE L2 2148 2364 -950 1842 155 4 4 chr11 101279901 101280178 -47503294 - AluJo SINE Alu -12 300 24 524 340 48 15 chr11 101280265 101280471 -47503001 + MIR SINE MIR 23 235 -27 243 360 105 7 chr11 101281221 101281374 -47502098 + MIR SINE MIR 6 173 -89 258 269 15 0 chr11 101281515 101281582 -47501890 - MLT1L LTR MaLR -199 416 349 225 243 180 42 chr11 101281661 101281850 -47501622 - MLT1L LTR MaLR -389 226 12 252 234 85 43 chr11 101281863 101281957 -47501515 + MIR SINE MIR 165 262 0 23 54 0 0 chr11 101282000 101282037 -47501435 + AT_rich Low_complexity Low_complexity 1 37 0 189 239 0 0 chr11 101282110 101282156 -47501316 - L2 LINE L2 -1 3312 3267 558 308 67 5 chr11 101282715 101282923 -47500549 - MIR SINE MIR -41 221 1 430 301 78 12 chr11 101283684 101283850 -47499622 - MIR SINE MIR -45 217 41 282 277 169 7 chr11 101283886 101284034 -47499438 - L3 LINE CR1 -716 861 690 216 135 0 0 chr11 101285497 101285534 -47497938 + (TTCA)n Simple_repeat Simple_repeat 2 38 0 190 231 0 0 chr11 101285922 101285961 -47497511 - MIR SINE MIR -174 88 50 300 338 43 48 chr11 101286688 101286895 -47496577 - MIR SINE MIR -6 256 51 198 296 70 28 chr11 101286872 101286943 -47496529 + L2 LINE L2 3240 3313 0 * 388 329 96 0 chr11 101287429 101287575 -47495897 + MIR SINE MIR 9 168 -94 1013 306 14 62 chr11 101287952 101288373 -47495099 - MLT1J1 LTR MaLR -2 444 44 485 271 117 16 chr11 101288430 101288618 -47494854 + MER112 DNA MER1_type 53 259 -1 692 287 91 18 chr11 101289763 101290094 -47493378 + L2 LINE L2 2959 3313 0 225 0 0 0 chr11 101290997 101291022 -47492450 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 2382 45 41 7 chr11 101291332 101291624 -47491848 - AluY SINE Alu -9 302 1 809 213 58 6 chr11 101292249 101292423 -47491049 - MLT1A1 LTR MaLR 0 374 192 853 119 16 0 chr11 101292463 101292589 -47490883 - AluSg/x SINE Alu -5 305 178 941 146 7 7 chr11 101292599 101292750 -47490722 - MLT1A1 LTR MaLR -214 151 1 195 236 0 36 chr11 101293284 101293339 -47490133 - MER5A DNA MER1_type -1 188 136 450 179 0 12 chr11 101293343 101293427 -47490045 + L1M4c LINE L1 1519 1601 -4783 394 271 21 10 chr11 101293428 101293524 -47489948 + MER5A DNA MER1_type 71 167 -22 255 226 16 0 chr11 101293673 101293735 -47489737 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 252 320 93 0 chr11 101293872 101293969 -47489503 - MIR SINE MIR 0 262 157 22 0 0 0 chr11 101293994 101294016 -47489456 + AT_rich Low_complexity Low_complexity 1 22 0 434 255 130 30 chr11 101294153 101294353 -47489119 + L1ME4a LINE L1 5618 5837 -284 2839 270 84 54 chr11 101294616 101296057 -47487415 + L1M4 LINE L1 5 1552 -4092 6205 149 20 23 chr11 101296269 101298308 -47485164 + L1PB1 LINE L1 4128 6148 -3 2806 216 137 35 chr11 101298330 101298789 -47484683 + L1M4 LINE L1 1458 1869 -4777 2109 128 0 10 chr11 101298789 101299102 -47484370 + AluSx SINE Alu 3 312 0 2806 216 137 35 chr11 101299102 101299612 -47483860 + L1M4 LINE L1 1869 2526 -4120 1776 104 0 41 chr11 101300004 101300274 -47483198 + AluSx SINE Alu 1 259 -53 25 0 0 0 chr11 101300304 101300329 -47483143 + AT_rich Low_complexity Low_complexity 1 25 0 184 267 83 17 chr11 101300712 101300772 -47482700 + MIR SINE MIR 3 66 -196 323 286 19 0 chr11 101300784 101300889 -47482583 - MLT2C1 LTR ERVL -276 121 15 1092 199 19 5 chr11 101300895 101301106 -47482366 - ERVL-C1 LTR ERVL -3 5761 5548 2105 127 0 37 chr11 101301114 101301436 -47482036 + MER7A DNA MER2_type 39 346 0 1891 167 3 7 chr11 101301460 101301759 -47481713 + AluJo SINE Alu 1 298 -14 421 300 85 119 chr11 101303223 101303633 -47479839 - L2 LINE L2 -5 3267 2872 208 236 18 18 chr11 101303952 101304007 -47479465 + MIR3 SINE MIR 11 65 -143 308 329 72 50 chr11 101304053 101304128 -47479344 - L2 LINE L2 0 3272 3200 2207 118 46 40 chr11 101304128 101304501 -47478971 + THE1C LTR MaLR 1 375 0 308 329 72 50 chr11 101304501 101304910 -47478562 - L2 LINE L2 -72 3200 2777 805 292 155 39 chr11 101304912 101305614 -47477858 - L2 LINE L2 -823 2491 1708 2477 91 0 0 chr11 101305653 101305961 -47477511 + AluSx SINE Alu 1 308 -4 251 175 35 35 chr11 101306482 101306596 -47476876 + GA-rich Low_complexity Low_complexity 4 117 0 241 260 13 26 chr11 101306608 101306685 -47476787 + GA-rich Low_complexity Low_complexity 1 76 0 2254 117 0 16 chr11 101306924 101307241 -47476231 + AluSx SINE Alu 1 312 0 211 349 114 8 chr11 101307670 101307802 -47475670 - L2 LINE L2 -482 2832 2687 24 32 0 0 chr11 101307957 101307988 -47475484 + AT_rich Low_complexity Low_complexity 1 31 0 2803 127 83 11 chr11 101308086 101308557 -47474915 + L1PB4 LINE L1 5652 6156 0 342 294 183 6 chr11 101308570 101308750 -47474722 - L2 LINE L2 -618 2696 2485 240 35 0 0 chr11 101309383 101309412 -47474060 + (TCCC)n Simple_repeat Simple_repeat 2 30 0 193 171 98 0 chr11 101309428 101309469 -47474003 - L3b LINE CR1 -236 1347 1303 209 197 33 49 chr11 101309973 101310034 -47473438 + MIR SINE MIR 25 84 -124 214 258 30 0 chr11 101310372 101310438 -47473034 - L3b LINE CR1 -405 1178 1111 456 296 117 9 chr11 101310825 101311038 -47472434 - MIR SINE MIR -17 245 10 324 336 28 9 chr11 101313317 101313424 -47470048 + MIR SINE MIR 36 144 -64 1199 145 95 29 chr11 101314295 101314348 -47469124 + MER89 LTR ERV1 302 350 -209 2225 151 72 43 chr11 101314348 101314764 -47468708 + MSTA LTR MaLR 1 428 0 1199 145 95 29 chr11 101314764 101314952 -47468520 + MER89 LTR ERV1 350 559 0 187 382 0 0 chr11 101314953 101315021 -47468451 - L2 LINE L2 -66 3206 3139 21 36 0 0 chr11 101315670 101315698 -47467774 + AT_rich Low_complexity Low_complexity 1 28 0 1248 296 69 24 chr11 101315895 101316358 -47467114 + L2 LINE L2 2830 3313 0 406 331 67 37 chr11 101316366 101316499 -47466973 + L1ME LINE L1 5353 5481 -640 18951 31 1 0 chr11 101316499 101319439 -47464033 + L1PA3 LINE L1 3213 6171 0 2613 40 0 7 chr11 101319439 101319739 -47463733 + L1PA3 LINE L1 5858 6155 0 406 331 67 37 chr11 101319739 101319902 -47463570 + L1ME LINE L1 5480 5660 -461 884 238 159 35 chr11 101319935 101320170 -47463302 + L1MDa LINE L1 1623 1828 -4760 2084 196 5 18 chr11 101320170 101320563 -47462909 + MLT1B LTR MaLR 3 390 0 884 238 159 35 chr11 101320563 101320752 -47462720 + L1MDa LINE L1 1828 2145 -4443 1245 200 0 13 chr11 101320773 101321008 -47462464 + AluJo SINE Alu 65 296 -16 2460 241 52 9 chr11 101321008 101321739 -47461733 + L1MDa LINE L1 2669 3431 -3104 2208 106 6 16 chr11 101321739 101322051 -47461421 + AluSg SINE Alu 1 309 -1 2002 193 64 2 chr11 101322077 101322470 -47461002 + LTR32 LTR ERVL 15 431 -40 507 193 6 74 chr11 101322486 101322613 -47460859 + L1MDa LINE L1 3446 3559 -2981 2448 83 3 3 chr11 101322613 101322925 -47460547 + AluSp SINE Alu 1 312 -1 507 193 6 74 chr11 101322925 101322973 -47460499 + L1MDa LINE L1 3559 3609 -2931 685 278 44 4 chr11 101323181 101323408 -47460064 + L1MDa LINE L1 3600 3835 -2705 822 131 16 8 chr11 101323420 101323542 -47459930 + AluJb SINE Alu 3 125 -187 814 208 10 25 chr11 101323549 101323751 -47459721 + L1MDa LINE L1 3833 4031 -2509 1671 206 56 26 chr11 101325394 101325825 -47457647 - MER89 LTR ERV1 -10 549 6 1697 234 33 121 chr11 101325943 101325966 -47457506 - MLT1E LTR MaLR 0 593 570 1708 198 95 19 chr11 101325966 101326334 -47457138 - MSTD LTR MaLR 0 396 1 1697 234 33 121 chr11 101326334 101326954 -47456518 - MLT1E LTR MaLR -23 570 7 1730 150 26 0 chr11 101326977 101327250 -47456222 - Tigger1 DNA MER2_type -1 2417 2138 1941 118 17 3 chr11 101327253 101327540 -47455932 - Tigger1 DNA MER2_type -1669 749 459 4568 222 79 34 chr11 101327540 101328614 -47454858 - MSTD-int LTR MaLR -29 1706 584 3504 180 10 11 chr11 101328727 101328747 -47454725 - MSTD-int LTR MaLR -1109 626 607 2522 64 3 13 chr11 101328747 101329061 -47454411 - AluY SINE Alu 0 311 1 3504 180 10 11 chr11 101329061 101329667 -47453805 - MSTD-int LTR MaLR -1128 607 1 1656 228 80 3 chr11 101329667 101330005 -47453467 - MLT1A1 LTR MaLR 0 365 2 249 316 0 13 chr11 101330780 101330859 -47452613 - MIR SINE MIR -58 204 127 2374 93 0 3 chr11 101330952 101331262 -47452210 - AluY SINE Alu -2 309 1 186 234 164 39 chr11 101331268 101331396 -47452076 - L2 LINE L2 -571 2743 2600 286 156 44 0 chr11 101331403 101331448 -47452024 + MER96 DNA MER1_type? 38 84 -91 1237 48 0 0 chr11 101331464 101331655 -47451817 + L1PA7 LINE L1 5985 6175 0 231 179 0 0 chr11 101332141 101332180 -47451292 - Charlie2 DNA MER1_type 0 2862 2824 216 226 95 24 chr11 101332232 101332316 -47451156 + MIR SINE MIR 134 223 -39 601 235 217 14 chr11 101332387 101332604 -47450868 - MIR SINE MIR 0 262 2 188 321 62 62 chr11 101332680 101332842 -47450630 - L3b LINE CR1 -126 1457 1296 1329 204 33 107 chr11 101333857 101334219 -47449253 + MLT1B LTR MaLR 1 333 -57 1532 113 85 0 chr11 101334219 101334431 -47449041 + MER30 DNA MER1_type 1 230 0 1329 204 33 107 chr11 101334431 101334460 -47449012 + MLT1B LTR MaLR 333 363 -27 4841 151 38 35 chr11 101334653 101335545 -47447927 - L1MC1 LINE L1 0 6333 5452 2046 108 19 38 chr11 101335545 101335859 -47447613 - AluSc SINE Alu -1 308 1 4841 151 38 35 chr11 101335859 101335953 -47447519 - L1MC1 LINE L1 -881 5452 5360 363 362 87 30 chr11 101336157 101336594 -47446878 + L1MEd LINE L1 126 587 -5532 2763 85 8 0 chr11 101336783 101337137 -47446335 + L1PA11 LINE L1 5810 6166 -8 2636 27 7 3 chr11 101337137 101337438 -47446034 + AluY SINE Alu 1 302 -9 798 251 58 62 chr11 101337478 101337992 -47445480 + L1ME LINE L1 322 833 -5237 349 282 0 17 chr11 101338062 101338179 -47445293 + L1ME LINE L1 49 163 -5907 284 318 13 39 chr11 101338321 101338475 -47444997 + L1ME LINE L1 320 469 -5601 441 0 0 0 chr11 101338838 101338887 -47444585 + (TG)n Simple_repeat Simple_repeat 1 49 0 2310 61 3 17 chr11 101338930 101339225 -47444247 - AluY SINE Alu -19 292 2 3188 127 49 0 chr11 101339257 101339745 -47443727 - MER41E LTR ERV1 0 512 1 662 321 30 33 chr11 101339943 101340310 -47443162 + L1ME LINE L1 414 779 -5291 4481 10 6 0 chr11 101340328 101340829 -47442643 + L1HS LINE L1 5376 5879 -276 281 289 0 21 chr11 101342698 101342795 -47440677 - MIR SINE MIR -2 260 166 843 114 130 82 chr11 101343042 101343226 -47440246 + LTR44 LTR ERV1 3 195 -324 4327 118 2 2 chr11 101343370 101343978 -47439494 - HERVH LTR ERV1 -2618 5095 4488 6189 85 7 2 chr11 101343980 101344830 -47438642 - HERVH LTR ERV1 -3720 3993 3140 * 19832 99 26 21 chr11 101344824 101347798 -47435674 - HERVH LTR ERV1 -4726 2987 1 2763 71 124 0 chr11 101347805 101348199 -47435273 - LTR7 LTR ERV1 -7 443 1 3083 177 12 3 chr11 101348200 101348900 -47434572 - L1MC/D LINE L1 -743 5797 5491 1458 261 63 14 chr11 101350351 101350856 -47432616 - L1MC/D LINE L1 -1833 4707 4178 712 248 105 70 chr11 101350922 101350967 -47432505 - L1MC/D LINE L1 -4654 1886 1844 1693 201 3 0 chr11 101350967 101351260 -47432212 + AluJo SINE Alu 1 294 -18 1674 188 7 7 chr11 101351266 101351559 -47431913 + AluJo SINE Alu 3 295 -17 2116 110 0 20 chr11 101351562 101351862 -47431610 + AluSc SINE Alu 3 296 -13 712 248 105 70 chr11 101351862 101352365 -47431107 - L1MC/D LINE L1 -4701 1839 1307 2707 63 29 0 chr11 101352472 101352821 -47430651 - HERVH LTR ERV1 -5978 1735 1377 2717 89 109 0 chr11 101352823 101353227 -47430245 - LTR7 LTR ERV1 -2 448 1 2298 106 56 13 chr11 101353227 101353603 -47429869 - HERVH LTR ERV1 0 7713 7322 1419 124 18 9 chr11 101353601 101353819 -47429653 - HERVH LTR ERV1 -1894 5819 5600 * 4416 143 0 1 chr11 101353820 101354483 -47428989 - HERVH LTR ERV1 -2564 5149 4488 3346 118 8 6 chr11 101354485 101354986 -47428486 - HERVH LTR ERV1 -3720 3993 3492 897 142 20 0 chr11 101354976 101355124 -47428348 - HERVH LTR ERV1 -4423 3290 3140 * 8106 106 3 6 chr11 101355118 101356276 -47427196 - HERVH LTR ERV1 -4726 2987 1834 1972 192 62 17 chr11 101356809 101357094 -47426378 + MER89 LTR ERV1 1 272 -287 2088 151 72 43 chr11 101357094 101357510 -47425962 + MSTA LTR MaLR 1 428 0 1972 192 62 17 chr11 101357510 101357698 -47425774 + MER89 LTR ERV1 272 559 0 21 36 0 0 chr11 101358416 101358444 -47425028 + AT_rich Low_complexity Low_complexity 1 28 0 1111 296 69 24 chr11 101358641 101359104 -47424368 + L2 LINE L2 2830 3313 0 18039 33 10 0 chr11 101359245 101361790 -47421682 + L1P2 LINE L1 3213 5782 -373 43333 39 26 0 chr11 101361790 101367423 -47416049 + L1P2 LINE L1 1 5782 -373 9074 70 113 0 chr11 101367423 101368681 -47414791 + L1P LINE L1 1 1400 -4746 240 35 0 0 chr11 101369265 101369294 -47414178 + (GGGA)n Simple_repeat Simple_repeat 2 30 0 288 294 183 6 chr11 101370079 101370259 -47413213 + L2 LINE L2 2485 2696 -618 2648 127 83 11 chr11 101370272 101370743 -47412729 - L1PB4 LINE L1 0 6156 5652 24 32 0 0 chr11 101370841 101370872 -47412600 + AT_rich Low_complexity Low_complexity 1 31 0 181 339 0 0 chr11 101371027 101371086 -47412386 + L2 LINE L2 2687 2745 -569 1170 129 121 31 chr11 101371289 101371545 -47411927 - Tigger3b DNA MER2_type -691 540 262 40275 69 14 10 chr11 101371545 101377650 -47405822 + L1PA5 LINE L1 2 6133 -21 1793 148 46 3 chr11 101377650 101377954 -47405518 - Tigger3b DNA MER2_type -914 317 1 417 253 167 23 chr11 101377987 101378161 -47405311 - MIR SINE MIR 0 262 64 24 53 0 0 chr11 101378161 101378199 -47405273 + AT_rich Low_complexity Low_complexity 1 38 0 301 185 104 67 chr11 101379265 101379400 -47404072 - L1MC/D LINE L1 -2325 5483 5344 25 0 0 0 chr11 101379421 101379446 -47404026 + AT_rich Low_complexity Low_complexity 1 25 0 257 281 12 70 chr11 101379499 101379542 -47403930 - L1MC/D LINE L1 -947 5199 5155 2369 88 3 7 chr11 101379542 101379847 -47403625 - AluSc SINE Alu -5 304 1 257 281 12 70 chr11 101379847 101379974 -47403498 - L1MC/D LINE L1 -991 5155 5039 519 329 81 10 chr11 101380062 101380369 -47403103 + L2 LINE L2 1043 1371 -1943 920 216 48 9 chr11 101380369 101380596 -47402876 - L1MB2 LINE L1 -1 6170 5935 4458 164 32 4 chr11 101380607 101381423 -47402049 - L1MA6 LINE L1 0 6300 5462 942 27 0 0 chr11 101381523 101381635 -47401837 + HERVH LTR ERV1 3882 3993 -3720 4497 134 1 3 chr11 101381637 101382300 -47401172 + HERVH LTR ERV1 4488 5149 -2564 1395 134 19 0 chr11 101382301 101382517 -47400955 + HERVH LTR ERV1 5600 5819 -1894 * 2471 90 48 13 chr11 101382515 101382894 -47400578 + HERVH LTR ERV1 7322 7713 0 2722 81 131 0 chr11 101382894 101383290 -47400182 + LTR7 LTR ERV1 1 448 -2 6063 157 67 45 chr11 101383292 101384572 -47398900 + L1MC3 LINE L1 5798 7105 -680 385 177 25 13 chr11 101384573 101384652 -47398820 + MLT1F1 LTR MaLR 45 124 -443 2172 214 37 69 chr11 101384688 101385253 -47398219 + MLT2B3 LTR ERVL 1 547 -7 2669 165 41 67 chr11 101385258 101385841 -47397631 + L1MC3 LINE L1 7217 7784 -1 292 229 28 64 chr11 101386029 101386138 -47397334 + L1MEd LINE L1 652 756 -5363 806 144 7 22 chr11 101386351 101386490 -47396982 + AluJo SINE Alu 1 137 -175 32856 77 4 22 chr11 101386498 101392744 -47390728 + L1PA5 LINE L1 11 6147 -7 902 175 52 0 chr11 101392848 101393042 -47390430 + L1MA9 LINE L1 6108 6311 -1 327 323 30 6 chr11 101393114 101393278 -47390194 + HAL1 LINE L1 1508 1675 -832 292 302 55 84 chr11 101393590 101393792 -47389680 + LTR67 LTR ERVL 360 555 -2 671 331 122 3 chr11 101393981 101394316 -47389156 + ERVL LTR ERVL 2068 2442 -3322 1151 282 74 42 chr11 101394316 101394401 -47389071 + HAL1 LINE L1 1464 1545 -962 1643 216 31 51 chr11 101394401 101394914 -47388558 + MLT1D LTR MaLR 3 505 0 1151 282 74 42 chr11 101394914 101395331 -47388141 + HAL1 LINE L1 1545 1982 -525 2459 148 44 7 chr11 101396343 101396754 -47386718 + MSTB1 LTR MaLR 7 432 0 44254 44 2 1 chr11 101397039 101403182 -47380290 + L1PA4 LINE L1 6 6155 0 376 276 97 21 chr11 101403247 101403392 -47380080 + MIR SINE MIR 78 233 -29 208 320 26 0 chr11 101403830 101403908 -47379564 + MIR3 SINE MIR 100 179 -29 2217 138 31 6 chr11 101404195 101404550 -47378922 + MER47A DNA MER2_type 3 366 0 2561 71 0 0 chr11 101405751 101406060 -47377412 + AluY SINE Alu 1 309 -2 346 396 34 0 chr11 101407578 101407727 -47375745 + L2 LINE L2 3119 3272 0 204 135 0 0 chr11 101408211 101408248 -47375224 + (TG)n Simple_repeat Simple_repeat 1 37 0 626 261 67 41 chr11 101408453 101408721 -47374751 + LTR16A1 LTR ERVL 183 457 0 2269 91 34 0 chr11 101408729 101409026 -47374446 + AluSp SINE Alu 1 307 -6 189 0 0 0 chr11 101409153 101409174 -47374298 + (T)n Simple_repeat Simple_repeat 1 21 0 605 158 10 0 chr11 101409174 101409275 -47374197 + LTR44 LTR ERV1 395 496 -23 601 219 138 57 chr11 101409577 101409911 -47373561 - HAL1 LINE L1 -1347 1160 800 1998 161 31 36 chr11 101410046 101410201 -47373271 - MER89 LTR ERV1 0 559 405 2182 110 0 10 chr11 101410201 101410501 -47372971 + AluSg SINE Alu 1 297 -13 1998 161 31 36 chr11 101410501 101410729 -47372743 - MER89 LTR ERV1 -154 405 178 359 169 169 0 chr11 101410771 101410854 -47372618 - MER89 LTR ERV1 -462 97 1 719 208 35 24 chr11 101410858 101411078 -47372394 - MER89 LTR ERV1 -287 272 18 1095 162 6 0 chr11 101411196 101411363 -47372109 + AluJb SINE Alu 132 299 -13 498 126 1 0 chr11 101412620 101412704 -47370768 + L1PB1 LINE L1 5922 6006 -145 2563 72 3 0 chr11 101412929 101413235 -47370237 + AluSp SINE Alu 1 307 -6 1989 190 62 17 chr11 101413663 101413948 -47369524 + MER89 LTR ERV1 1 272 -287 2088 151 72 43 chr11 101413948 101414364 -47369108 + MSTA LTR MaLR 1 428 0 1989 190 62 17 chr11 101414364 101414552 -47368920 + MER89 LTR ERV1 272 559 0 21 36 0 0 chr11 101415270 101415298 -47368174 + AT_rich Low_complexity Low_complexity 1 28 0 1111 296 69 24 chr11 101415495 101415958 -47367514 + L2 LINE L2 2830 3313 0 18140 31 2 2 chr11 101416099 101419024 -47364448 + L1PA4 LINE L1 3213 6155 0 10188 93 7 1 chr11 101419014 101421165 -47362307 + L1PA7 LINE L1 3991 6149 -5 * 2162 132 0 3 chr11 101421233 101421528 -47361944 + AluSx SINE Alu 1 294 -18 319 325 41 0 chr11 101421541 101421664 -47361808 - L2 LINE L2 0 3272 3145 847 144 0 36 chr11 101422369 101422508 -47360964 + AluJo SINE Alu 1 134 -178 646 309 30 34 chr11 101423772 101424070 -47359402 - L3 LINE CR1 -1 1576 1280 302 312 24 32 chr11 101424126 101424251 -47359221 + MIR SINE MIR 2 125 -137 2369 92 0 0 chr11 101424628 101424920 -47358552 + AluSq SINE Alu 1 292 -21 385 291 11 44 chr11 101425484 101425666 -47357806 + MIR SINE MIR 59 234 -28 539 229 90 12 chr11 101426229 101426395 -47357077 + MIR SINE MIR 66 244 -18 235 346 83 26 chr11 101426699 101427156 -47356316 + L2 LINE L2 2480 2962 -352 479 247 2 1 chr11 101428125 101428240 -47355232 + MIR SINE MIR 37 151 -61 303 122 0 0 chr11 101429095 101429144 -47354328 + (GGAGA)n Simple_repeat Simple_repeat 3 51 0 372 289 21 30 chr11 101429266 101429519 -47353953 + GA-rich Low_complexity Low_complexity 1 250 0 41442 53 32 0 chr11 101429818 101435455 -47348017 - L1P2 LINE L1 -335 5819 2 11634 99 6 8 chr11 101435454 101436631 -47346841 - L1P LINE L1 -2134 4012 2837 * 2229 77 57 14 chr11 101436631 101436928 -47346544 - AluY SINE Alu -1 310 1 11634 99 6 8 chr11 101436928 101437462 -47346010 - L1P LINE L1 -3309 2837 2304 6628 206 20 21 chr11 101437574 101437672 -47345800 - L1 LINE L1 -1638 4508 4411 276 30 0 0 chr11 101437672 101437705 -47345767 + (TG)n Simple_repeat Simple_repeat 1 33 0 6628 206 20 21 chr11 101437705 101439878 -47343594 - L1 LINE L1 -1735 4411 2232 2152 188 65 67 chr11 101440014 101440365 -47343107 + L1 LINE L1 3661 4011 -2135 1437 212 14 18 chr11 101440365 101440648 -47342824 + AluJo SINE Alu 1 282 -30 2152 188 65 67 chr11 101440648 101441009 -47342463 + L1 LINE L1 4011 4371 -1775 275 0 0 0 chr11 101441008 101441041 -47342431 - L1P LINE L1 -747 5408 5376 * 542 321 30 33 chr11 101441059 101441426 -47342046 - L1ME LINE L1 -5291 779 414 3172 127 47 0 chr11 101441624 101442113 -47341359 + MER41E LTR ERV1 1 512 0 2328 51 3 17 chr11 101442145 101442441 -47341031 + AluY SINE Alu 2 293 -18 1209 259 57 38 chr11 101442804 101443229 -47340243 - LTR16C LTR ERVL 0 491 59 2203 60 0 57 chr11 101443417 101443718 -47339754 - AluY SINE Alu -27 284 1 500 211 0 0 chr11 101444108 101444198 -47339274 - Tigger7 DNA MER2_type 0 2587 2498 2076 168 22 10 chr11 101444200 101444617 -47338855 - Tigger7 DNA MER2_type -213 520 1 209 294 85 68 chr11 101445467 101445702 -47337770 + L2 LINE L2 2827 3065 -207 189 368 72 16 chr11 101445779 101445904 -47337568 + L2 LINE L2 3090 3221 -51 5604 161 82 13 chr11 101446042 101447777 -47335695 - L1PB1 LINE L1 -1 6150 4282 5701 206 16 4 chr11 101447822 101449174 -47334298 + L1 LINE L1 2857 4224 -1922 1527 45 65 0 chr11 101449295 101449494 -47333978 - L1PA6 LINE L1 -2 6152 5941 345 285 179 0 chr11 101450116 101450295 -47333177 - MIR SINE MIR -15 247 37 576 224 35 40 chr11 101450403 101450604 -47332868 + L1ME LINE L1 5493 5692 -429 317 196 0 120 chr11 101450613 101450746 -47332726 + L1MC5 LINE L1 7688 7804 -157 227 237 149 18 chr11 101450884 101450998 -47332474 + L1ME LINE L1 5798 5926 -195 338 292 83 8 chr11 101451431 101451551 -47331921 - L2 LINE L2 -6 3266 3138 1810 134 0 51 chr11 101451705 101452018 -47331454 + AluSx SINE Alu 3 299 -13 251 234 55 28 chr11 101452951 101453096 -47330376 + L1MC4a LINE L1 5134 5282 -864 1597 241 116 54 chr11 101453132 101453962 -47329510 + L1MC4a LINE L1 5314 6194 -1614 295 222 40 146 chr11 101454027 101454302 -47329170 + L1MC4 LINE L1 7789 8034 -8 2149 106 0 0 chr11 101455128 101455410 -47328062 - AluSx SINE Alu -28 284 3 1080 103 0 75 chr11 101455863 101456037 -47327435 + AluY SINE Alu 1 161 -150 1488 50 50 40 chr11 101457313 101457591 -47325881 + AluY SINE Alu 1 281 -30 2280 85 3 7 chr11 101457694 101457989 -47325483 - AluSq SINE Alu -19 294 1 324 0 0 0 chr11 101460171 101460207 -47323265 + (GA)n Simple_repeat Simple_repeat 1 36 0 2468 48 0 7 chr11 101461462 101461757 -47321715 + AluY SINE Alu 1 293 -18 1677 149 67 3 chr11 101462453 101462768 -47320704 + L1MB2 LINE L1 5832 6166 -5 24 0 0 0 chr11 101462769 101462793 -47320679 + AT_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr11 101463205 101463225 -47320247 + (CAT)n Simple_repeat Simple_repeat 2 21 0 2218 99 3 0 chr11 101463429 101463723 -47319749 - AluSp SINE Alu -18 295 1 21 0 0 0 chr11 101463729 101463750 -47319722 + AT_rich Low_complexity Low_complexity 1 21 0 871 337 26 40 chr11 101463762 101464380 -47319092 + L1PA16 LINE L1 788 1396 -6178 256 313 21 0 chr11 101464510 101464606 -47318866 + L1PA16 LINE L1 2084 2181 -5400 13505 206 26 22 chr11 101464841 101469294 -47314178 + L1PA16 LINE L1 2182 6665 -939 2262 102 7 3 chr11 101469294 101469597 -47313875 + AluSq SINE Alu 1 304 -9 13505 206 26 22 chr11 101469597 101470542 -47312930 + L1PA16 LINE L1 6665 7604 0 35 54 0 0 chr11 101470566 101470622 -47312850 + AT_rich Low_complexity Low_complexity 1 56 0 192 40 0 0 chr11 101470706 101470731 -47312741 + (CAAAAA)n Simple_repeat Simple_repeat 3 27 0 980 179 144 5 chr11 101470852 101471053 -47312419 + MIR SINE MIR 19 247 -15 1954 86 69 31 chr11 101471189 101471480 -47311992 - AluSc SINE Alu -7 302 1 351 195 11 81 chr11 101471562 101471649 -47311823 + MER58 DNA MER1_type 19 99 -2321 509 170 9 38 chr11 101471661 101471767 -47311705 + MER58 DNA MER1_type 2318 2420 0 736 213 95 54 chr11 101472306 101472527 -47310945 + MIR SINE MIR 29 258 -4 353 205 26 0 chr11 101472805 101472883 -47310589 + MLT1K LTR MaLR 509 588 0 1099 307 79 55 chr11 101473126 101473239 -47310233 + L2 LINE L2 2154 2263 -1051 2367 39 7 0 chr11 101473239 101473559 -47309913 + AluY SINE Alu 1 322 0 1099 307 79 55 chr11 101473559 101474167 -47309305 + L2 LINE L2 2263 2893 -421 1777 155 95 12 chr11 101474203 101474539 -47308933 + THE1B LTR MaLR 1 364 0 250 313 81 0 chr11 101474541 101474640 -47308832 + L2 LINE L2 2955 3061 -252 254 276 149 35 chr11 101474866 101474953 -47308519 + L2 LINE L2 3188 3284 -29 371 228 110 76 chr11 101475012 101475157 -47308315 + MER106B DNA MER1_type 6 155 -904 182 265 0 20 chr11 101475517 101475566 -47307906 + L2 LINE L2 3173 3220 -93 1975 170 0 3 chr11 101475985 101476296 -47307176 + AluSx SINE Alu 1 310 -2 355 321 144 11 chr11 101477010 101477197 -47306275 - L3 LINE CR1 -754 823 612 651 171 0 0 chr11 101477211 101477316 -47306156 + MER20 DNA MER1_type 115 219 0 196 311 0 0 chr11 101477749 101477794 -47305678 + MIR3 SINE MIR 157 201 -7 2224 84 3 11 chr11 101478552 101478869 -47304603 + AluSq SINE Alu 1 315 0 393 271 171 0 chr11 101479409 101479538 -47303934 + MIR SINE MIR 1 151 -111 217 313 114 0 chr11 101480208 101480339 -47303133 - MIR SINE MIR 0 262 117 647 289 24 32 chr11 101480360 101480609 -47302863 - MIR SINE MIR -12 250 4 304 356 68 0 chr11 101480627 101480745 -47302727 - L2 LINE L2 0 3272 3147 235 308 51 0 chr11 101480753 101480831 -47302641 - MIR SINE MIR -179 83 2 21 0 0 0 chr11 101481136 101481157 -47302315 + AT_rich Low_complexity Low_complexity 1 21 0 3413 152 50 5 chr11 101481431 101482016 -47301456 + LTR36 LTR ERV1 1 611 0 343 304 67 0 chr11 101482033 101482168 -47301304 + L1MEd LINE L1 1043 1186 -5448 2159 132 0 3 chr11 101482404 101482708 -47300764 + AluSx SINE Alu 1 303 -9 350 289 79 27 chr11 101482863 101483118 -47300354 + L1MEd LINE L1 1536 1708 -4834 219 290 11 21 chr11 101483272 101483365 -47300107 + (CAAGA)n Simple_repeat Simple_repeat 2 93 0 278 302 160 6 chr11 101483503 101483672 -47299800 - MIR SINE MIR -20 242 48 466 314 29 23 chr11 101484109 101484284 -47299188 + MIR SINE MIR 7 182 -80 482 285 168 54 chr11 101484717 101484760 -47298712 - L3 LINE CR1 -358 1219 1182 1773 131 55 7 chr11 101484760 101485050 -47298422 - AluSx SINE Alu -8 304 1 482 285 168 54 chr11 101485050 101485193 -47298279 - L3 LINE CR1 -395 1182 1057 1293 67 101 0 chr11 101485193 101485227 -47298245 - MER107 DNA MER1_type 0 197 168 191 86 0 29 chr11 101485227 101485262 -47298210 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1293 67 101 0 chr11 101485262 101485406 -47298066 - MER107 DNA MER1_type -29 168 1 482 285 168 54 chr11 101485406 101485628 -47297844 - L3 LINE CR1 -520 1057 763 43 20 0 0 chr11 101485648 101485698 -47297774 + AT_rich Low_complexity Low_complexity 1 50 0 2097 114 0 0 chr11 101486145 101486449 -47297023 - AluSc SINE Alu 0 304 1 2182 108 6 25 chr11 101486967 101487282 -47296190 + AluSq SINE Alu 1 309 -4 21 36 0 0 chr11 101487412 101487440 -47296032 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr11 101487920 101487949 -47295523 + AT_rich Low_complexity Low_complexity 1 29 0 1983 107 10 36 chr11 101488393 101488702 -47294770 + AluJo SINE Alu 6 306 -6 207 278 28 28 chr11 101488830 101488902 -47294570 - MIR3 SINE MIR -3 205 134 311 215 111 44 chr11 101488958 101489093 -47294379 + L1ME4a LINE L1 5977 6120 -1 1651 134 12 113 chr11 101489137 101489472 -47294000 + AluJo SINE Alu 1 301 -11 404 120 13 0 chr11 101489589 101489664 -47293808 + Alu SINE Alu 235 310 -2 2389 251 52 16 chr11 101490213 101490444 -47293028 - MER82 DNA MER2_type 0 653 432 2011 157 15 6 chr11 101490444 101490787 -47292685 - MER7A DNA MER2_type -1 345 2 2389 251 52 16 chr11 101490787 101491185 -47292287 - MER82 DNA MER2_type -221 432 1 25 0 0 0 chr11 101491407 101491432 -47292040 + AT_rich Low_complexity Low_complexity 1 25 0 329 302 47 8 chr11 101491451 101491580 -47291892 + L1ME3A LINE L1 2880 3013 -3133 752 184 61 27 chr11 101491857 101492004 -47291468 + AluJo SINE Alu 4 155 -157 398 309 93 40 chr11 101492088 101492409 -47291063 + L1ME3A LINE L1 3395 3731 -2415 2175 100 31 0 chr11 101492764 101493053 -47290419 + AluSx SINE Alu 1 298 -14 2277 248 78 65 chr11 101493056 101493570 -47289902 + L1ME3A LINE L1 4657 5163 -1007 1491 139 104 15 chr11 101493570 101493829 -47289643 + AluJo SINE Alu 1 282 -30 2277 248 78 65 chr11 101493829 101494811 -47288661 + L1ME3A LINE L1 5163 6161 -9 1618 165 17 14 chr11 101494932 101495229 -47288243 + AluJo SINE Alu 6 303 -9 763 137 101 0 chr11 101495477 101495616 -47287856 - L1PA15 LINE L1 0 6165 6013 6502 136 39 28 chr11 101495699 101496894 -47286578 - Tigger3b DNA MER2_type 0 1231 23 392 239 43 49 chr11 101497539 101497608 -47285864 - L1MA10 LINE L1 -2 6332 6264 566 233 60 7 chr11 101497608 101497758 -47285714 - L1ME1 LINE L1 -63 6103 5946 897 172 89 5 chr11 101497762 101497965 -47285507 - L1M4 LINE L1 -1192 4954 4735 189 0 0 0 chr11 101497965 101497986 -47285486 + (T)n Simple_repeat Simple_repeat 1 21 0 752 184 61 27 chr11 101498197 101498344 -47285128 + AluJo SINE Alu 4 155 -157 391 306 79 42 chr11 101498486 101498751 -47284721 + L1MC/D LINE L1 3457 3731 -2415 2171 108 30 0 chr11 101499106 101499403 -47284069 + AluSx SINE Alu 1 306 -6 447 336 34 17 chr11 101499424 101499719 -47283753 + L1MC/D LINE L1 5315 5614 -2194 4708 159 35 11 chr11 101499997 101500976 -47282496 - L1MB4 LINE L1 0 6180 5178 506 212 15 38 chr11 101501064 101501196 -47282276 + MER58C DNA MER1_type 64 192 -23 2057 138 7 0 chr11 101501256 101501554 -47281918 - AluJb SINE Alu -12 300 1 21 36 0 0 chr11 101502313 101502341 -47281131 + AT_rich Low_complexity Low_complexity 1 28 0 908 206 0 12 chr11 101503076 101503241 -47280231 - FRAM SINE Alu -1 165 3 445 296 9 0 chr11 101504115 101504230 -47279242 - L2 LINE L2 -4 3309 3194 1449 210 174 12 chr11 101504264 101504688 -47278784 - L2 LINE L2 -1189 2125 1633 741 250 47 24 chr11 101504805 101505017 -47278455 - MIR SINE MIR -17 245 29 261 83 0 0 chr11 101505034 101505070 -47278402 + (TC)n Simple_repeat Simple_repeat 2 37 0 243 0 0 0 chr11 101505070 101505097 -47278375 + (CA)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr11 101505365 101505387 -47278085 + AT_rich Low_complexity Low_complexity 1 22 0 667 256 184 35 chr11 101505421 101505878 -47277594 - L1ME4a LINE L1 -68 6053 5529 447 265 65 18 chr11 101505929 101506212 -47277260 - L1ME4a LINE L1 -747 5399 5124 281 270 164 66 chr11 101506386 101506538 -47276934 - MIR SINE MIR -18 244 78 1935 192 72 29 chr11 101507033 101507517 -47275955 + MLT1D LTR MaLR 1 505 0 232 135 39 0 chr11 101507802 101507854 -47275618 + Charlie1 DNA MER1_type 1567 1620 -1141 760 232 32 16 chr11 101508442 101508632 -47274840 + Charlie1a DNA MER1_type 2 194 -1261 11028 49 0 1 chr11 101508634 101508979 -47274493 + L1PA5 LINE L1 3970 4314 -1840 2296 86 3 3 chr11 101508979 101509282 -47274190 + AluY SINE Alu 3 305 -6 11028 49 0 1 chr11 101509282 101511127 -47272345 + L1PA5 LINE L1 4314 6153 -1 192 40 0 0 chr11 101511759 101511784 -47271688 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 255 288 129 50 chr11 101512188 101512327 -47271145 + L2 LINE L2 3123 3272 0 22 35 0 0 chr11 101512680 101512709 -47270763 + AT_rich Low_complexity Low_complexity 1 29 0 1270 76 5 11 chr11 101512712 101512896 -47270576 + AluY SINE Alu 125 307 -4 391 244 110 8 chr11 101512919 101513046 -47270426 + MIR SINE MIR 11 150 -112 517 225 149 35 chr11 101513052 101513255 -47270217 - MLT1F1 LTR MaLR -7 647 303 2201 119 0 10 chr11 101513255 101513567 -47269905 - AluSx SINE Alu -3 309 1 414 325 71 71 chr11 101513669 101514008 -47269464 - L2 LINE L2 -6 3266 2928 418 333 89 16 chr11 101514055 101514313 -47269159 - L2 LINE L2 -495 2819 2543 522 104 0 0 chr11 101514373 101514450 -47269022 + MADE1 DNA Mariner 4 80 0 321 229 107 18 chr11 101514453 101514561 -47268911 - MIR SINE MIR -81 127 11 397 279 221 13 chr11 101514568 101514722 -47268750 - MER5A DNA MER1_type 0 189 4 286 327 67 0 chr11 101515339 101515443 -47268029 - L2 LINE L2 -375 2938 2828 348 294 176 0 chr11 101516370 101516489 -47266983 - L3 LINE CR1 -147 1430 1291 497 203 73 0 chr11 101516561 101516684 -47266788 + MER3 DNA MER1_type 8 139 -70 281 333 175 0 chr11 101516862 101516988 -47266484 - L2 LINE L2 -8 3264 3117 1053 228 5 14 chr11 101517157 101517376 -47266096 + MER20 DNA MER1_type 1 217 -2 297 165 0 184 chr11 101517380 101517483 -47265989 + MLT1K LTR MaLR 134 217 -371 202 250 0 0 chr11 101518897 101518941 -47264531 + (TA)n Simple_repeat Simple_repeat 1 44 0 220 326 78 23 chr11 101519781 101519910 -47263562 - L2 LINE L2 -1 3271 3136 574 281 124 81 chr11 101520388 101520516 -47262956 - L2 LINE L2 -1 3312 3191 1559 115 187 7 chr11 101520516 101520821 -47262651 + MER46B DNA MER2_type 1 235 -1 574 281 124 81 chr11 101520821 101521134 -47262338 - L2 LINE L2 -122 3191 2852 3151 190 79 111 chr11 101521540 101522156 -47261316 + L1MC4a LINE L1 6204 6805 -1003 304 77 0 0 chr11 101522156 101522195 -47261277 + MADE1 DNA Mariner 1 39 -41 3151 190 79 111 chr11 101522195 101522708 -47260764 + L1MC4a LINE L1 6805 7333 -475 1220 172 152 20 chr11 101523078 101523381 -47260091 - MER2 DNA MER2_type -1 343 1 268 252 133 0 chr11 101523621 101523726 -47259746 + L1ME LINE L1 5645 5761 -401 810 167 17 108 chr11 101524455 101524510 -47258962 + Looper DNA T2_type 1231 1289 -269 937 118 0 22 chr11 101524510 101524645 -47258827 - FLAM_C SINE Alu 0 133 2 204 40 0 0 chr11 101524655 101524680 -47258792 + (TTTTC)n Simple_repeat Simple_repeat 5 29 0 1865 146 4 0 chr11 101524686 101524960 -47258512 - AluSx SINE Alu -37 275 1 810 167 17 108 chr11 101524960 101525126 -47258346 + Looper DNA T2_type 1303 1448 -110 557 309 236 28 chr11 101525536 101526145 -47257327 - L2 LINE L2 -2515 799 64 968 280 55 44 chr11 101528233 101528708 -47254764 - L1MC4a LINE L1 -1867 5941 5462 534 316 29 12 chr11 101528708 101528879 -47254593 - MER5B DNA MER1_type -2 176 3 329 236 114 64 chr11 101528886 101528969 -47254503 - L1MC4a LINE L1 -2342 5466 5372 2258 110 0 0 chr11 101528969 101529268 -47254204 + AluSx SINE Alu 1 299 -13 329 236 114 64 chr11 101529268 101529324 -47254148 - L1MC4a LINE L1 -2436 5372 5320 244 303 33 8 chr11 101529620 101529742 -47253730 - L1MC4a LINE L1 -1277 4869 4745 312 299 121 35 chr11 101529922 101530096 -47253376 + L1M4c LINE L1 1284 1472 -4912 620 306 74 5 chr11 101530112 101530328 -47253144 - MIR SINE MIR -29 233 3 1989 134 6 19 chr11 101530594 101530907 -47252565 + AluSx SINE Alu 1 309 -3 362 187 22 33 chr11 101531003 101531094 -47252378 + HAL1 LINE L1 1585 1674 -833 1655 138 30 40 chr11 101531136 101531284 -47252188 + AluJo SINE Alu 1 149 -173 2274 109 22 33 chr11 101531284 101531652 -47251820 + THE1B LTR MaLR 1 364 0 1655 138 30 40 chr11 101531652 101531828 -47251644 + AluJo SINE Alu 149 322 0 2990 162 207 100 chr11 101531846 101532413 -47251059 + L1MD3 LINE L1 6636 7141 -854 347 200 240 10 chr11 101532413 101532513 -47250959 + MLT1F1 LTR MaLR 3 125 -442 2990 162 207 100 chr11 101532513 101532854 -47250618 + L1MD3 LINE L1 7141 7751 -244 1860 97 3 123 chr11 101532875 101533215 -47250257 + AluSx SINE Alu 1 299 -13 262 215 133 63 chr11 101533266 101533536 -47249936 + L1M4 LINE L1 5104 5392 -754 913 158 0 0 chr11 101533553 101533686 -47249786 - AluSg/x SINE Alu -15 297 165 221 292 146 0 chr11 101534372 101534461 -47249011 - L2 LINE L2 -1 3312 3211 303 355 45 9 chr11 101534461 101534571 -47248901 - L2 LINE L2 -21 3292 3179 804 140 60 7 chr11 101535059 101535209 -47248263 + L1MB2 LINE L1 5995 6152 -19 1485 188 31 166 chr11 101535278 101535822 -47247650 + L1MC4 LINE L1 7430 7995 0 1763 106 8 0 chr11 101536222 101536468 -47247004 + L1P4 LINE L1 5468 5715 -446 4012 100 25 2 chr11 101536568 101537156 -47246316 + L1PA13 LINE L1 5549 6150 -13 765 291 216 24 chr11 101537225 101537913 -47245559 - L2 LINE L2 -52 3261 2457 279 265 176 15 chr11 101539791 101539927 -47243545 - MIR SINE MIR -56 206 49 446 260 73 36 chr11 101540150 101540342 -47243130 - MIR SINE MIR -50 212 14 1637 68 5 5 chr11 101540359 101540564 -47242908 - AluSx SINE Alu -74 238 34 189 232 143 0 chr11 101543519 101543575 -47239897 - L2 LINE L2 0 3313 3250 1800 157 10 19 chr11 101543747 101544060 -47239412 - MER2 DNA MER2_type 0 345 36 230 315 74 19 chr11 101544069 101544177 -47239295 - L3b LINE CR1 -180 1403 1290 1930 126 54 0 chr11 101544408 101544702 -47238770 - AluSx SINE Alu -2 310 1 325 250 162 54 chr11 101545849 101545997 -47237475 + MIR SINE MIR 7 170 -92 191 261 136 23 chr11 101546329 101546417 -47237055 + MIR SINE MIR 86 183 -79 211 297 54 0 chr11 101546916 101546990 -47236482 - MIR3 SINE MIR -23 185 108 379 256 99 0 chr11 101547715 101547836 -47235636 + L2 LINE L2 3181 3313 0 350 386 36 9 chr11 101547843 101548063 -47235409 + L3 LINE CR1 1349 1574 -3 23 33 0 0 chr11 101548231 101548261 -47235211 + AT_rich Low_complexity Low_complexity 1 30 0 186 155 121 52 chr11 101548913 101548971 -47234501 + MIR SINE MIR 152 213 -49 293 246 204 0 chr11 101549106 101549248 -47234224 - MIR SINE MIR -6 256 86 311 112 15 0 chr11 101553181 101553239 -47230233 - L1MB1 LINE L1 -216 5964 5904 672 174 214 0 chr11 101553317 101553518 -47229954 - MER33 DNA MER1_type -80 244 1 309 232 136 40 chr11 101553558 101553683 -47229789 + MIR SINE MIR 15 151 -111 345 314 141 0 chr11 101553935 101554091 -47229381 - MIR SINE MIR -2 260 83 2060 137 6 13 chr11 101554538 101554851 -47228621 - AluSx SINE Alu -1 311 1 1202 139 30 122 chr11 101554899 101555202 -47228270 - L1MB1 LINE L1 -10 6179 5905 2019 91 20 30 chr11 101555297 101555593 -47227879 + AluSc SINE Alu 8 300 -9 790 11 0 0 chr11 101555639 101555730 -47227742 + AluYa5/8 SINE Alu 218 308 -3 186 71 0 0 chr11 101556113 101556141 -47227331 + (GGGA)n Simple_repeat Simple_repeat 2 29 0 2465 57 0 3 chr11 101557050 101557351 -47226121 + AluY SINE Alu 1 300 -11 181 255 0 78 chr11 101557759 101557810 -47225662 + L2 LINE L2 3210 3256 -16 369 248 54 8 chr11 101558606 101558735 -47224737 + L1ME3A LINE L1 6031 6165 -5 219 387 13 53 chr11 101558741 101558891 -47224581 - L2 LINE L2 -614 2700 2557 268 337 87 0 chr11 101559050 101559142 -47224330 + L2 LINE L2 3173 3272 0 559 227 109 101 chr11 101559333 101559571 -47223901 - MLT1K LTR MaLR -335 253 14 1815 132 3 32 chr11 101560556 101560867 -47222605 + AluY SINE Alu 6 307 -4 372 244 110 8 chr11 101560890 101561017 -47222455 + MIR SINE MIR 11 150 -112 1093 227 167 77 chr11 101561023 101561226 -47222246 - MLT1F1 LTR MaLR -7 560 377 2209 103 0 19 chr11 101561226 101561538 -47221934 - AluSc SINE Alu -3 306 1 1093 227 167 77 chr11 101561538 101561852 -47221620 - MLT1F1 LTR MaLR -190 377 1 322 239 76 22 chr11 101562528 101562620 -47220852 + L2 LINE L2 3208 3304 -9 1728 174 14 0 chr11 101562736 101563023 -47220449 - AluJb SINE Alu -21 291 1 216 0 0 0 chr11 101563109 101563133 -47220339 + (T)n Simple_repeat Simple_repeat 1 24 0 2340 92 3 0 chr11 101563259 101563562 -47219910 - AluY SINE Alu -7 304 1 276 149 0 0 chr11 101564247 101564294 -47219178 + (TG)n Simple_repeat Simple_repeat 1 47 0 34 65 0 0 chr11 101565001 101565063 -47218409 + AT_rich Low_complexity Low_complexity 1 62 0 363 269 67 0 chr11 101565181 101565300 -47218172 - MIR3 SINE MIR -6 202 76 194 330 55 33 chr11 101565294 101565385 -47218087 + MIR SINE MIR 61 153 -109 * 263 327 59 0 chr11 101565382 101565483 -47217989 - MIR SINE MIR 0 262 156 246 146 188 0 chr11 101565484 101565532 -47217940 + MER58 DNA MER1_type 2364 2420 0 252 186 274 39 chr11 101565651 101565753 -47217719 - MIR SINE MIR -120 142 17 2163 102 0 3 chr11 101566147 101566441 -47217031 + AluSg SINE Alu 1 293 -17 311 259 129 29 chr11 101566763 101566902 -47216570 - MIR SINE MIR -33 229 77 242 242 55 44 chr11 101567478 101567569 -47215903 + L2 LINE L2 3192 3283 -30 1390 81 0 6 chr11 101571805 101571977 -47211495 - AluSx SINE Alu -141 171 1 4220 145 19 28 chr11 101571982 101572886 -47210586 - L1P4 LINE L1 -687 5481 4577 264 339 9 9 chr11 101573910 101574025 -47209447 + L3b LINE CR1 1145 1259 -324 451 270 68 6 chr11 101574026 101574189 -47209283 - L2 LINE L2 -1 3312 3140 4101 109 5 4 chr11 101574222 101574773 -47208699 + MER41A LTR ERV1 3 554 0 278 232 128 40 chr11 101574938 101575063 -47208409 - MIR SINE MIR -48 214 79 674 144 0 0 chr11 101576372 101576469 -47207003 - ORSL DNA AcHobo -10 265 169 2295 91 0 10 chr11 101576474 101576771 -47206701 + AluSx SINE Alu 1 294 -18 210 37 0 0 chr11 101576771 101576798 -47206674 + (GA)n Simple_repeat Simple_repeat 2 28 0 257 209 30 45 chr11 101576798 101576865 -47206607 - ORSL DNA AcHobo -201 74 9 1293 229 51 51 chr11 101577205 101577457 -47206015 + L1MC4 LINE L1 7576 7827 -215 3655 133 55 9 chr11 101577457 101578034 -47205438 - MER6A DNA MER2_type -1 604 1 1293 229 51 51 chr11 101578034 101578106 -47205366 + L1MC4 LINE L1 7827 7898 -144 237 33 0 0 chr11 101578106 101578136 -47205336 + (TA)n Simple_repeat Simple_repeat 2 31 0 1293 229 51 51 chr11 101578136 101578277 -47205195 + L1MC4 LINE L1 7897 8042 0 549 327 67 39 chr11 101578738 101579126 -47204346 - LTR16C LTR ERVL -4 487 89 534 305 45 36 chr11 101579377 101579479 -47203993 - MIR SINE MIR 0 262 162 1241 207 24 0 chr11 101579479 101579692 -47203780 + MER20 DNA MER1_type 1 218 -1 534 305 45 36 chr11 101579692 101579812 -47203660 - MIR SINE MIR -100 162 38 1473 110 92 27 chr11 101579862 101580180 -47203292 - MER61C LTR ERV1 0 434 1 439 303 26 14 chr11 101580878 101581067 -47202405 + MIR SINE MIR 3 261 -1 370 366 5 5 chr11 101581376 101581578 -47201894 - L1ME3A LINE L1 -286 5884 5683 1076 293 123 31 chr11 101581602 101582583 -47200889 + L1ME LINE L1 3899 4970 -1176 279 330 23 45 chr11 101582910 101583131 -47200341 + L1ME LINE L1 5306 5521 -645 3393 117 28 41 chr11 101584955 101585214 -47198258 + L1PB4 LINE L1 5612 5873 -283 2428 94 3 0 chr11 101585214 101585522 -47197950 - AluSp SINE Alu -2 311 3 3393 117 28 41 chr11 101585522 101585802 -47197670 + L1PB4 LINE L1 5873 6144 -12 254 323 65 0 chr11 101585921 101586045 -47197427 - MER117 DNA MER1_type -36 161 30 2303 166 24 0 chr11 101586052 101586432 -47197040 - MLT1B LTR MaLR 0 390 2 2276 118 0 3 chr11 101586454 101586768 -47196704 + AluSq SINE Alu 1 313 0 24 32 0 0 chr11 101587107 101587138 -47196334 + AT_rich Low_complexity Low_complexity 1 31 0 13847 49 1 0 chr11 101587138 101589518 -47193954 - L1PA5 LINE L1 -7 6147 3768 992 214 5 9 chr11 101589578 101589798 -47193674 - L1MB3 LINE L1 0 6183 5965 1543 164 76 4 chr11 101590358 101590633 -47192839 - AluJb SINE Alu -17 295 1 256 232 36 0 chr11 101591073 101591129 -47192343 - L2 LINE L2 -5 3267 3210 323 200 244 34 chr11 101591473 101591678 -47191794 + MER112 DNA MER1_type 1 248 -12 210 205 0 0 chr11 101591688 101591727 -47191745 + MIR3 SINE MIR 156 194 -14 2033 152 3 0 chr11 101591980 101592282 -47191190 - AluSx SINE Alu -9 303 1 255 279 38 0 chr11 101593365 101593424 -47190048 + (TATATG)n Simple_repeat Simple_repeat 5 69 -17 7857 129 32 6 chr11 101593424 101594692 -47188780 - HSMAR2 DNA Mariner 0 1302 2 255 279 38 0 chr11 101594692 101594711 -47188761 + (TATATG)n Simple_repeat Simple_repeat 69 86 0 195 326 45 22 chr11 101596376 101596465 -47187007 - L2 LINE L2 -14 3299 3209 248 214 0 0 chr11 101596558 101596600 -47186872 - MIR SINE MIR -8 254 213 198 0 0 0 chr11 101596739 101596761 -47186711 + (T)n Simple_repeat Simple_repeat 1 22 0 837 172 89 5 chr11 101596975 101597178 -47186294 + L1M4 LINE L1 4735 4954 -1192 519 233 60 7 chr11 101597182 101597332 -47186140 + L1ME1 LINE L1 5946 6103 -63 355 264 31 37 chr11 101597238 101597401 -47186071 + L1MA10 LINE L1 6171 6332 -2 * 6070 137 40 28 chr11 101598046 101599240 -47184232 + Tigger3b DNA MER2_type 23 1231 0 716 135 92 7 chr11 101599323 101599464 -47184008 + L1PA15 LINE L1 6012 6164 -1 1682 144 17 20 chr11 101599713 101600012 -47183460 - AluJo SINE Alu -9 303 6 21 82 0 0 chr11 101600078 101600127 -47183345 + AT_rich Low_complexity Low_complexity 1 49 0 2042 251 74 55 chr11 101600133 101601091 -47182381 - L1ME3A LINE L1 -9 6161 5222 1549 152 95 14 chr11 101601091 101601374 -47182098 - AluJo SINE Alu -6 306 1 2042 251 74 55 chr11 101601374 101601891 -47181581 - L1ME3A LINE L1 -948 5222 4716 2133 83 0 0 chr11 101601891 101602155 -47181317 - AluSg SINE Alu -14 296 33 2042 251 74 55 chr11 101602155 101602570 -47180902 - L1ME3A LINE L1 -1454 4716 4237 2311 88 7 0 chr11 101602570 101602866 -47180606 - AluSc SINE Alu -11 298 1 2042 251 74 55 chr11 101602866 101602924 -47180548 - L1ME3A LINE L1 -1933 4237 4182 772 257 118 51 chr11 101602917 101603485 -47179987 - L1ME3A LINE L1 -2261 3885 3280 * 580 208 0 48 chr11 101604021 101604146 -47179326 + L2 LINE L2 3193 3311 -2 1307 124 30 0 chr11 101604372 101604574 -47178898 + MSTA LTR MaLR 221 428 0 517 229 71 11 chr11 101604577 101604760 -47178712 + HAL1 LINE L1 2133 2326 -181 226 275 117 25 chr11 101604766 101604886 -47178586 + HAL1 LINE L1 2375 2505 -2 315 303 99 26 chr11 101605274 101605426 -47178046 + MIR SINE MIR 34 196 -66 304 293 100 81 chr11 101605563 101605972 -47177500 - L1M2 LINE L1 -5703 1146 730 207 0 0 0 chr11 101606071 101606094 -47177378 + (CA)n Simple_repeat Simple_repeat 2 24 0 210 71 0 0 chr11 101606128 101606156 -47177316 + (TATG)n Simple_repeat Simple_repeat 1 28 0 368 256 128 30 chr11 101606179 101606312 -47177160 - MIR3 SINE MIR -43 165 20 23 33 0 0 chr11 101606933 101606963 -47176509 + AT_rich Low_complexity Low_complexity 1 30 0 1876 116 8 8 chr11 101606968 101607236 -47176236 - AluSx SINE Alu -44 268 1 2282 122 0 0 chr11 101607838 101608141 -47175331 - AluSx SINE Alu -9 303 1 214 235 86 25 chr11 101608391 101608472 -47175000 + MIR SINE MIR 125 210 -52 249 139 0 23 chr11 101608699 101608742 -47174730 + (TTTC)n Simple_repeat Simple_repeat 3 44 0 593 82 96 20 chr11 101608745 101608891 -47174581 + CT-rich Low_complexity Low_complexity 4 160 0 677 276 157 62 chr11 101609676 101610108 -47173364 - L2 LINE L2 -12 3301 2829 342 331 68 23 chr11 101610352 101610485 -47172987 + L2 LINE L2 3175 3313 0 2424 77 3 0 chr11 101611064 101611363 -47172109 + AluY SINE Alu 1 300 -11 873 214 16 5 chr11 101611503 101611690 -47171782 - MER5A DNA MER1_type 0 189 1 2355 85 0 3 chr11 101612117 101612411 -47171061 - AluSg SINE Alu -17 293 1 1848 279 176 29 chr11 101613289 101614446 -47169026 + L2 LINE L2 1813 3170 -143 1058 189 105 47 chr11 101614446 101614790 -47168682 + MER47A DNA MER2_type 1 364 -2 1848 279 176 29 chr11 101614790 101614886 -47168586 + L2 LINE L2 3170 3251 -62 500 254 85 18 chr11 101614878 101615043 -47168429 - MIR SINE MIR -77 185 10 * 330 304 165 55 chr11 101615045 101615456 -47168016 + L2 LINE L2 1893 2365 -949 2276 64 3 7 chr11 101615456 101615762 -47167710 + AluY SINE Alu 1 305 0 330 304 165 55 chr11 101615762 101615823 -47167649 + L2 LINE L2 2365 2418 -896 407 311 20 0 chr11 101615929 101616077 -47167395 + Charlie8 DNA MER1_type 4 154 -2263 257 197 56 56 chr11 101616366 101616437 -47167035 + Charlie8 DNA MER1_type 2342 2412 -5 206 286 0 0 chr11 101617277 101617333 -47166139 + (ATG)n Simple_repeat Simple_repeat 2 57 0 412 292 11 0 chr11 101617349 101617502 -47165970 - MIR SINE MIR -40 222 68 2153 151 0 0 chr11 101617980 101618291 -47165181 + AluSx SINE Alu 1 311 -1 451 262 147 5 chr11 101619857 101620048 -47163424 + L3b LINE CR1 1264 1481 -102 658 281 44 25 chr11 101620220 101620423 -47163049 - MIR SINE MIR -50 212 6 409 167 0 0 chr11 101622203 101622263 -47161209 + AluS SINE Alu 1 60 -253 572 212 0 61 chr11 101622263 101622395 -47161077 - MIR SINE MIR -137 125 2 505 319 82 14 chr11 101622675 101622882 -47160590 - MIR SINE MIR -23 239 19 461 198 75 19 chr11 101623744 101623850 -47159622 + L2 LINE L2 3200 3311 -2 1696 129 4 0 chr11 101624392 101624640 -47158832 + AluSx SINE Alu 27 275 -37 225 0 0 0 chr11 101624646 101624671 -47158801 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 189 0 0 0 chr11 101624735 101624756 -47158716 + (A)n Simple_repeat Simple_repeat 1 21 0 180 0 0 0 chr11 101624894 101624914 -47158558 + (A)n Simple_repeat Simple_repeat 1 20 0 535 183 0 0 chr11 101624983 101625076 -47158396 - MER5A DNA MER1_type -84 105 13 2249 114 0 0 chr11 101625838 101626136 -47157336 + AluSx SINE Alu 1 298 -14 240 222 121 20 chr11 101626197 101626296 -47157176 - L1ME4a LINE L1 -12 6109 6001 235 279 29 64 chr11 101627470 101627610 -47155862 + L1M4 LINE L1 3957 4091 -2055 203 232 0 54 chr11 101627703 101627759 -47155713 + (TCTCTG)n Simple_repeat Simple_repeat 3 55 0 1773 179 0 0 chr11 101627850 101628123 -47155349 - AluJb SINE Alu -39 273 1 2544 40 3 34 chr11 101628256 101628577 -47154895 - AluY SINE Alu 0 311 1 436 242 67 16 chr11 101628693 101628887 -47154585 - L1ME4a LINE L1 -193 5928 5725 1038 159 49 41 chr11 101629172 101629417 -47154055 + L1MB1 LINE L1 5844 6090 -78 251 247 202 0 chr11 101629971 101630060 -47153412 + L2 LINE L2 3202 3308 -5 2180 104 0 3 chr11 101630640 101630928 -47152544 - AluSq SINE Alu -26 287 1 187 243 375 21 chr11 101631501 101631645 -47151827 - MIR SINE MIR -61 201 7 236 313 12 0 chr11 101632542 101632622 -47150850 + CT-rich Low_complexity Low_complexity 2 82 0 333 118 0 0 chr11 101632753 101632804 -47150668 + (TG)n Simple_repeat Simple_repeat 1 51 0 2345 60 10 7 chr11 101634513 101634812 -47148660 + AluSp SINE Alu 1 300 -13 21 57 0 0 chr11 101635374 101635409 -47148063 + AT_rich Low_complexity Low_complexity 1 35 0 1092 135 53 34 chr11 101636354 101636561 -47146911 + MER20 DNA MER1_type 5 215 -4 234 62 0 0 chr11 101637246 101637278 -47146194 + (CAGTT)n Simple_repeat Simple_repeat 4 35 0 2656 80 3 11 chr11 101637674 101638038 -47145434 - L1PA10 LINE L1 -3 6165 5805 324 324 186 20 chr11 101639280 101639672 -47143800 + L2 LINE L2 2808 3264 -8 259 302 201 25 chr11 101639968 101640365 -47143107 + L2 LINE L2 1923 2389 -925 296 266 229 21 chr11 101640633 101640821 -47142651 + MIR SINE MIR 15 241 -21 185 368 103 0 chr11 101641185 101641272 -47142200 + L2 LINE L2 3168 3263 -9 434 248 68 17 chr11 101641921 101642038 -47141434 + MIR SINE MIR 57 179 -83 206 249 195 0 chr11 101642107 101642197 -47141275 + L2 LINE L2 3169 3271 -1 291 261 153 27 chr11 101642622 101642733 -47140739 - MIR SINE MIR -107 155 31 2244 97 7 0 chr11 101643909 101644199 -47139273 + AluSx SINE Alu 1 292 -20 2036 104 3 10 chr11 101644271 101644560 -47138912 - AluSp SINE Alu -26 287 1 1407 174 25 47 chr11 101644590 101644932 -47138540 + MER33 DNA MER1_type 1 323 -1 386 148 26 150 chr11 101645748 101645959 -47137513 + Charlie5 DNA MER1_type 35 2617 0 833 291 16 16 chr11 101647084 101647338 -47136134 - MIR SINE MIR -1 261 8 195 100 0 0 chr11 101648423 101648453 -47135019 + (T)n Simple_repeat Simple_repeat 1 30 0 2860 73 98 0 chr11 101648859 101649267 -47134205 + LTR7 LTR ERV1 1 448 -2 20143 89 22 25 chr11 101649269 101652265 -47131207 + HERVH LTR ERV1 1 2987 -4726 937 128 20 0 chr11 101652259 101652407 -47131065 + HERVH LTR ERV1 3140 3290 -4423 * 3452 111 4 6 chr11 101652397 101652900 -47130572 + HERVH LTR ERV1 3492 3993 -3720 4424 143 0 1 chr11 101652902 101653565 -47129907 + HERVH LTR ERV1 4488 5149 -2564 1430 111 23 9 chr11 101653566 101653783 -47129689 + HERVH LTR ERV1 5600 5819 -1894 2373 104 50 13 chr11 101653783 101654159 -47129313 + HERVH LTR ERV1 7324 7713 0 2961 68 95 0 chr11 101654159 101654568 -47128904 + LTR7 LTR ERV1 1 448 -2 515 218 7 23 chr11 101654570 101654703 -47128769 - MIR SINE MIR -67 141 24 504 336 74 40 chr11 101654703 101655380 -47128092 - L2 LINE L2 0 3272 2562 228 321 149 42 chr11 101656019 101656234 -47127238 + MIR SINE MIR 14 251 -11 2259 109 0 0 chr11 101656848 101657164 -47126308 + AluSx SINE Alu 1 316 0 439 97 72 267 chr11 101657265 101657460 -47126012 + MER51B LTR ERV1 1 157 -220 1710 160 43 10 chr11 101657462 101657762 -47125710 + MER51B LTR ERV1 68 377 0 1223 163 41 56 chr11 101657764 101658034 -47125438 + MER51B-int LTR ERV1 1 266 -7550 1153 241 63 82 chr11 101658059 101658634 -47124838 + MER51B-int LTR ERV1 220 809 -4378 499 301 20 17 chr11 101658746 101659052 -47124420 + MER51B-int LTR ERV1 683 1812 -3885 256 325 47 0 chr11 101659337 101659466 -47124006 + MER51B-int LTR ERV1 1743 2201 -5908 378 266 57 58 chr11 101659665 101660024 -47123448 + MER51A-int LTR ERV1 1466 1680 -4849 3119 309 60 53 chr11 101660741 101663827 -47119645 + MER51A-int LTR ERV1 2779 6268 -1086 1902 166 41 0 chr11 101663973 101664292 -47119180 + MER51A-int LTR ERV1 7484 7815 -1 495 172 49 28 chr11 101664294 101664427 -47119045 + MER51A LTR ERV1 1 138 -239 248 128 0 21 chr11 101664439 101664486 -47118986 + MER51B LTR ERV1 109 154 -223 1691 162 50 10 chr11 101664486 101664789 -47118683 + MER51B LTR ERV1 63 377 0 377 277 75 22 chr11 101667822 101667989 -47115483 - MIR SINE MIR -51 211 39 1877 239 112 55 chr11 101668307 101669077 -47114395 + L2 LINE L2 2002 2815 -499 266 224 201 22 chr11 101669099 101669233 -47114239 + L2 LINE L2 3143 3300 -13 240 228 127 0 chr11 101669938 101670017 -47113455 + MIR SINE MIR 118 206 -56 277 29 0 0 chr11 101670242 101670277 -47113195 + L1PB3 LINE L1 6115 6149 -5 21 36 0 0 chr11 101670290 101670318 -47113154 + AT_rich Low_complexity Low_complexity 1 28 0 1608 188 47 94 chr11 101670472 101670961 -47112511 + MLT1C LTR MaLR 2 467 0 35 54 0 0 chr11 101671286 101671342 -47112130 + AT_rich Low_complexity Low_complexity 1 56 0 617 263 17 39 chr11 101671432 101671611 -47111861 - MER5B DNA MER1_type 0 178 4 377 171 26 0 chr11 101671616 101671692 -47111780 - MIR3 SINE MIR -50 158 81 200 293 116 0 chr11 101671683 101671830 -47111642 + L2 LINE L2 2901 3064 -208 * 297 211 74 11 chr11 101672130 101672225 -47111247 - L1ME4a LINE L1 -6 6115 6015 190 204 61 0 chr11 101672366 101672415 -47111057 - MIR SINE MIR -60 202 151 363 272 58 0 chr11 101672612 101672715 -47110757 - MER91C DNA MER1_type 0 140 32 292 217 152 0 chr11 101673381 101673473 -47109999 - MIR SINE MIR -39 223 118 444 335 137 0 chr11 101673992 101674204 -47109268 + L2 LINE L2 2509 2749 -565 1052 210 49 0 chr11 101674210 101674415 -47109057 + MER58A DNA MER1_type 9 223 -1 1681 184 79 12 chr11 101674548 101674890 -47108582 + MLT1A1 LTR MaLR 1 365 0 208 274 60 34 chr11 101676079 101676196 -47107276 + MIR3 SINE MIR 66 185 -23 490 188 87 7 chr11 101676787 101676925 -47106547 - MIR3 SINE MIR -22 186 38 299 342 50 0 chr11 101677004 101677124 -47106348 - L2 LINE L2 -8 3264 3139 312 330 61 0 chr11 101677246 101677361 -47106111 + L2 LINE L2 3147 3268 -4 191 310 0 0 chr11 101677391 101677449 -47106023 + MIR SINE MIR 92 149 -113 310 245 58 0 chr11 101677518 101677657 -47105815 + (TA)n Simple_repeat Simple_repeat 2 148 0 2167 112 133 16 chr11 101677759 101678142 -47105330 + MSTA LTR MaLR 1 428 0 8019 166 137 21 chr11 101678680 101680253 -47103219 + MER52A LTR ERV1 1 1755 0 232 222 0 0 chr11 101680255 101680309 -47103163 + MIR SINE MIR 183 236 -26 307 271 93 8 chr11 101680708 101680826 -47102646 - MIR SINE MIR -62 146 19 299 295 51 59 chr11 101681839 101682026 -47101446 + MIR SINE MIR 30 214 -48 213 316 61 10 chr11 101682715 101682813 -47100659 - L2 LINE L2 -1 3271 3169 304 191 19 95 chr11 101682987 101683045 -47100427 + MIR3 SINE MIR 103 151 -57 578 235 16 64 chr11 101683045 101683232 -47100240 - MER5B DNA MER1_type 0 178 1 304 191 19 95 chr11 101683232 101683278 -47100194 + MIR3 SINE MIR 151 199 -9 552 254 37 9 chr11 101683328 101683500 -47099972 + MIR SINE MIR 15 188 -67 262 220 17 0 chr11 101683582 101683641 -47099831 - L2 LINE L2 -4 3309 3250 1074 336 19 21 chr11 101683839 101684020 -47099452 + LTR16B LTR ERVL 34 214 -250 2007 133 118 45 chr11 101684020 101684419 -47099053 + MSTA LTR MaLR 1 428 0 1074 336 19 21 chr11 101684419 101684669 -47098803 + LTR16B LTR ERVL 214 464 0 2305 103 60 23 chr11 101684808 101685159 -47098313 - THE1B LTR MaLR 0 364 1 11731 95 6 9 chr11 101685159 101686743 -47096729 - THE1B-int LTR MaLR 0 1580 1 2191 110 56 34 chr11 101686743 101687099 -47096373 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr11 101687414 101687435 -47096037 + AT_rich Low_complexity Low_complexity 1 21 0 304 231 111 60 chr11 101687683 101687800 -47095672 + L1ME LINE L1 840 962 -5108 435 333 63 57 chr11 101687992 101688250 -47095222 + HAL1 LINE L1 1366 1628 -879 2336 96 0 16 chr11 101688250 101688553 -47094919 - AluY SINE Alu -13 298 1 435 333 63 57 chr11 101688553 101688660 -47094812 + HAL1 LINE L1 1628 1733 -774 180 0 0 0 chr11 101688769 101688789 -47094683 + (A)n Simple_repeat Simple_repeat 1 20 0 1162 203 19 57 chr11 101688791 101689000 -47094472 + L1M3a LINE L1 1001 1182 -4773 2373 88 0 3 chr11 101689000 101689296 -47094176 + AluY SINE Alu 1 295 -16 1162 203 19 57 chr11 101689296 101689498 -47093974 + L1M3a LINE L1 1182 1390 -4565 569 217 0 0 chr11 101689499 101689605 -47093867 + FLAM_C SINE Alu 2 107 -36 1754 277 39 11 chr11 101689651 101690436 -47093036 + L1M1 LINE L1 1314 2207 -4175 985 97 0 0 chr11 101690440 101690564 -47092908 + AluSx SINE Alu 13 136 -177 2246 97 0 3 chr11 101690564 101690852 -47092620 + AluSg SINE Alu 1 287 -23 1261 144 0 0 chr11 101690888 101691112 -47092360 + AluSx SINE Alu 129 352 0 5790 212 28 17 chr11 101691114 101692678 -47090794 + L1M1 LINE L1 2201 3785 -2597 817 313 97 24 chr11 101692782 101693969 -47089503 + L1M1 LINE L1 4290 5563 -819 380 294 15 25 chr11 101693983 101694187 -47089285 + L1ME2 LINE L1 5372 5573 -597 323 262 43 57 chr11 101694250 101694391 -47089081 + L1ME2 LINE L1 5746 5884 -280 1523 155 57 10 chr11 101694449 101694857 -47088615 - LTR45B LTR ERV1 -19 512 3 1658 206 65 0 chr11 101695199 101695608 -47087864 + L1MC3 LINE L1 6256 6358 -1 237 303 258 0 chr11 101695901 101695990 -47087482 - MER5A DNA MER1_type -35 154 43 198 325 28 13 chr11 101695935 101696011 -47087461 + MER5B DNA MER1_type 92 179 -10 * 765 179 132 32 chr11 101696614 101696804 -47086668 - MER3 DNA MER1_type 0 209 1 260 185 136 12 chr11 101696970 101697051 -47086421 + MER20 DNA MER1_type 1 91 -128 310 119 15 15 chr11 101697053 101697120 -47086352 + (TG)n Simple_repeat Simple_repeat 2 68 0 542 158 26 53 chr11 101697148 101697262 -47086210 + MER20 DNA MER1_type 109 219 0 251 133 22 0 chr11 101697605 101697650 -47085822 - MSTA LTR MaLR -3 425 380 2337 75 0 0 chr11 101697654 101697936 -47085536 + AluY SINE Alu 15 296 -15 495 234 168 46 chr11 101698192 101698473 -47084999 - MER57A LTR ERV1 0 403 75 2083 175 43 21 chr11 101698473 101698896 -47084576 - Tigger2a DNA MER2_type -2 432 1 495 234 168 46 chr11 101698896 101698972 -47084500 - MER57A LTR ERV1 -328 75 10 274 241 108 62 chr11 101699125 101699229 -47084243 + L1M4 LINE L1 2184 2282 -3864 1241 225 13 0 chr11 101699229 101699465 -47084007 - MER8 DNA MER2_type 0 239 1 274 241 108 62 chr11 101699465 101699729 -47083743 + L1M4 LINE L1 2282 2569 -3577 472 258 107 66 chr11 101699855 101700173 -47083299 + L1M4 LINE L1 2880 3210 -2936 346 229 129 18 chr11 101700177 101700347 -47083125 - L1MC5 LINE L1 -26 7935 7747 408 284 99 20 chr11 101700389 101700590 -47082882 + L1M4 LINE L1 3239 3455 -2691 486 226 221 60 chr11 101700593 101700792 -47082680 + MIR SINE MIR 5 235 -27 647 290 44 39 chr11 101700832 101701377 -47082095 + L1M4 LINE L1 3476 4023 -2123 25 0 0 0 chr11 101701377 101701402 -47082070 + AT_rich Low_complexity Low_complexity 1 25 0 2866 7 0 0 chr11 101701430 101701740 -47081732 + AluYb8 SINE Alu 1 310 -8 491 111 0 0 chr11 101703076 101703148 -47080324 - MLT1B LTR MaLR 0 390 319 511 246 0 0 chr11 101703159 101703277 -47080195 + L1M3a LINE L1 4 121 -5834 1184 268 119 18 chr11 101703315 101703819 -47079653 + L1M3a LINE L1 448 1002 -4953 1972 169 13 0 chr11 101703819 101704127 -47079345 + AluJo SINE Alu 1 312 0 241 314 195 31 chr11 101704275 101704348 -47079124 + L2 LINE L2 2428 2488 -826 4586 148 40 3 chr11 101704348 101705103 -47078369 - LTR39 LTR ERV1 0 783 1 241 314 195 31 chr11 101705103 101705290 -47078182 + L2 LINE L2 2488 2731 -583 206 227 0 57 chr11 101705871 101705959 -47077513 + MIR3 SINE MIR 5 87 -121 290 333 30 54 chr11 101706287 101706455 -47077017 - MIR SINE MIR -50 212 49 1859 154 23 23 chr11 101709335 101709678 -47073794 + MER61A LTR ERV1 1 343 0 494 221 104 9 chr11 101709705 101709915 -47073557 + MLT1E LTR MaLR 1 250 -404 696 96 10 10 chr11 101710065 101710169 -47073303 - AluSq/x SINE Alu -209 104 1 2183 110 0 3 chr11 101710513 101710805 -47072667 - AluSg SINE Alu -19 291 1 2502 61 0 0 chr11 101711542 101711838 -47071634 + AluY SINE Alu 1 296 -15 278 348 129 0 chr11 101712252 101712430 -47071042 - L2 LINE L2 -685 2629 2429 2174 142 3 0 chr11 101713565 101713876 -47069596 - AluJo SINE Alu 0 312 1 253 307 186 7 chr11 101714576 101714706 -47068766 + MIR3 SINE MIR 5 159 -49 502 256 168 0 chr11 101714706 101714843 -47068629 - MER5A DNA MER1_type -3 186 27 8052 72 12 10 chr11 101715133 101716202 -47067270 - MER11C LTR ERVK 0 1071 1 227 272 105 31 chr11 101716331 101716493 -47066979 - MIR3 SINE MIR -2 206 33 223 281 31 0 chr11 101717362 101717426 -47066046 - L2 LINE L2 -3 3310 3245 4540 186 131 12 chr11 101719808 101720995 -47062477 - L1MC4 LINE L1 -19 8023 6696 25 75 0 0 chr11 101721177 101721230 -47062242 + AT_rich Low_complexity Low_complexity 1 53 0 2141 97 0 20 chr11 101721415 101721714 -47061758 + AluSg SINE Alu 1 293 -17 2134 93 0 21 chr11 101721814 101722105 -47061367 + AluSg SINE Alu 11 295 -15 22 0 0 0 chr11 101722926 101722948 -47060524 + AT_rich Low_complexity Low_complexity 1 22 0 730 304 52 9 chr11 101724278 101724508 -47058964 + MIR SINE MIR 22 261 -1 21 0 0 0 chr11 101724975 101724996 -47058476 + AT_rich Low_complexity Low_complexity 1 21 0 4837 151 95 7 chr11 101725004 101726473 -47056999 - L1MA9 LINE L1 -21 6291 4707 648 201 13 25 chr11 101726455 101726614 -47056858 - L1MA9 LINE L1 -2279 3867 3711 * 485 160 28 8 chr11 101726609 101726733 -47056739 - L1M4 LINE L1 -3099 3111 2975 * 1743 192 102 11 chr11 101726814 101727198 -47056274 + MSTB LTR MaLR 16 364 0 3854 238 68 35 chr11 101727198 101729031 -47054441 - L1M4 LINE L1 -3372 2838 1065 1938 136 7 7 chr11 101729031 101729317 -47054155 - AluSg SINE Alu -24 286 1 3854 238 68 35 chr11 101729317 101729552 -47053920 - L1M4 LINE L1 -5145 1065 839 2226 121 0 3 chr11 101729552 101729866 -47053606 - AluSq SINE Alu 0 313 1 3854 238 68 35 chr11 101729866 101730815 -47052657 - L1M4 LINE L1 -5371 839 1 1055 146 0 0 chr11 101730901 101731052 -47052420 - FAM SINE Alu -27 158 8 548 266 52 64 chr11 101731343 101731572 -47051900 - MIR SINE MIR -26 236 15 257 302 52 0 chr11 101732307 101732403 -47051069 + MIR SINE MIR 48 148 -60 30 45 0 0 chr11 101732915 101732959 -47050513 + AT_rich Low_complexity Low_complexity 1 44 0 24 0 0 0 chr11 101734364 101734388 -47049084 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr11 101734919 101734948 -47048524 + AT_rich Low_complexity Low_complexity 1 29 0 258 56 0 0 chr11 101735515 101735551 -47047921 + (TGAA)n Simple_repeat Simple_repeat 2 37 0 198 211 0 0 chr11 101735693 101735731 -47047741 - MIR SINE MIR -108 154 117 2414 227 125 16 chr11 101736855 101737543 -47045929 + L2 LINE L2 1371 2133 -1181 385 364 87 0 chr11 101737844 101738039 -47045433 - MIR SINE MIR -25 237 26 1277 50 0 13 chr11 101738153 101738312 -47045160 + AluY SINE Alu 147 303 -8 246 95 0 0 chr11 101839518 101839560 -46943912 + (A)n Simple_repeat Simple_repeat 1 42 0 1954 93 0 0 chr11 101839740 101839986 -46943486 - AluSq SINE Alu -67 246 1 2153 122 6 13 chr11 101840353 101840665 -46942807 + AluSx SINE Alu 3 312 0 2440 106 0 0 chr11 101840903 101841214 -46942258 + AluSx SINE Alu 1 311 -1 1033 244 80 44 chr11 101841282 101841730 -46941742 - MLT1C LTR MaLR 0 467 2 2285 112 0 7 chr11 101841825 101842129 -46941343 - AluSx SINE Alu -10 302 1 2467 39 0 0 chr11 101842234 101842562 -46940910 + AluY SINE Alu 1 328 0 2514 70 0 0 chr11 101842716 101843016 -46940456 - AluSg SINE Alu -10 300 1 243 0 0 0 chr11 101844014 101844041 -46939431 + (TG)n Simple_repeat Simple_repeat 2 28 0 1431 134 5 0 chr11 101845130 101845332 -46938140 + AluSx SINE Alu 10 212 -100 467 0 0 0 chr11 101845332 101845386 -46938086 + AluSq/x SINE Alu 78 131 -182 933 140 0 7 chr11 101845390 101845526 -46937946 + AluSq/x SINE Alu 1 135 -177 2339 96 0 3 chr11 101845526 101845827 -46937645 + AluSx SINE Alu 1 300 -12 1096 70 5 32 chr11 101846100 101846285 -46937187 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 219 139 0 0 chr11 101846285 101846321 -46937151 + (TCCC)n Simple_repeat Simple_repeat 1 36 0 1192 40 17 17 chr11 101846321 101846498 -46936974 + (TTTC)n Simple_repeat Simple_repeat 3 179 0 612 116 0 0 chr11 101846504 101846599 -46936873 - MER41A LTR ERV1 -88 466 372 2063 105 0 41 chr11 101846608 101846923 -46936549 - AluSx SINE Alu 0 303 1 530 230 0 70 chr11 101847975 101848162 -46935310 + L1MB8 LINE L1 5897 6070 -108 691 167 0 24 chr11 101848295 101848421 -46935051 - FLAM_C SINE Alu -12 131 9 2024 113 35 0 chr11 101848546 101848829 -46934643 + AluSx SINE Alu 1 293 -19 261 218 0 18 chr11 101849405 101849460 -46934012 + THE1C LTR MaLR 99 152 -223 396 228 110 0 chr11 101849673 101849800 -46933672 + MLT1E LTR MaLR 16 156 -349 432 136 0 0 chr11 101849812 101849878 -46933594 - AluS SINE Alu -246 67 2 778 192 77 23 chr11 101849897 101850102 -46933370 + THE1C LTR MaLR 1 193 -182 508 233 0 48 chr11 101850204 101850393 -46933079 + CT-rich Low_complexity Low_complexity 1 180 0 1066 240 51 11 chr11 101850432 101850762 -46932710 + MLT1E LTR MaLR 167 593 0 811 146 7 20 chr11 101850993 101851144 -46932328 - LTR7 LTR ERV1 0 450 302 881 132 8 18 chr11 101851682 101851850 -46931622 - LTR7 LTR ERV1 -232 218 1 180 0 0 0 chr11 101852955 101852975 -46930497 + (TAA)n Simple_repeat Simple_repeat 2 21 0 258 119 24 0 chr11 101853574 101853616 -46929856 + CT-rich Low_complexity Low_complexity 4 46 0 878 129 0 32 chr11 101853616 101853802 -46929670 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 897 187 18 9 chr11 101853804 101854101 -46929371 + CT-rich Low_complexity Low_complexity 1 489 -20 1002 113 0 32 chr11 101854101 101854287 -46929185 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 897 187 18 9 chr11 101854287 101854309 -46929163 + CT-rich Low_complexity Low_complexity 489 509 0 2095 135 16 0 chr11 101854309 101854612 -46928860 - AluSg SINE Alu -2 308 1 2489 65 7 3 chr11 101854682 101854989 -46928483 + AluY SINE Alu 1 308 -3 758 200 14 52 chr11 101855002 101855160 -46928312 + L1MA8 LINE L1 6086 6236 -55 2275 111 3 9 chr11 101855160 101855475 -46927997 + AluSq SINE Alu 1 313 0 758 200 14 52 chr11 101855475 101855526 -46927946 + L1MA8 LINE L1 6236 6287 -4 1066 91 0 0 chr11 101855535 101855667 -46927805 + AluSg/x SINE Alu 171 302 -8 1392 190 30 15 chr11 101855726 101855994 -46927478 + AluJo SINE Alu 26 297 -15 2325 104 3 0 chr11 101855998 101856296 -46927176 + AluSg SINE Alu 1 299 -11 1474 147 3 98 chr11 101856301 101856627 -46926845 + AluJo SINE Alu 3 297 -5 945 154 0 7 chr11 101856635 101856778 -46926694 + FRAM SINE Alu 5 146 -30 378 0 0 0 chr11 101856782 101856824 -46926648 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 1611 147 9 100 chr11 101856824 101857164 -46926308 + AluJo SINE Alu 3 311 -1 407 90 0 0 chr11 101857307 101857374 -46926098 - AluSp/q SINE Alu -7 306 240 359 100 69 31 chr11 101857453 101857613 -46925859 + (TA)n Simple_repeat Simple_repeat 1 166 0 397 101 64 57 chr11 101857625 101858038 -46925434 + (TA)n Simple_repeat Simple_repeat 1 416 0 231 209 67 0 chr11 101858067 101858172 -46925300 + (TA)n Simple_repeat Simple_repeat 2 113 0 215 105 58 23 chr11 101858183 101858269 -46925203 + (TA)n Simple_repeat Simple_repeat 1 89 0 39 50 0 0 chr11 101858273 101858333 -46925139 + AT_rich Low_complexity Low_complexity 1 60 0 202 132 38 0 chr11 101858344 101858397 -46925075 + (TA)n Simple_repeat Simple_repeat 2 56 0 2011 112 7 7 chr11 101858484 101858769 -46924703 - AluJb SINE Alu -27 285 1 1821 137 0 22 chr11 101859520 101859798 -46923674 - AluJo SINE Alu -16 296 25 2287 107 0 0 chr11 101859879 101860168 -46923304 - AluSx SINE Alu -23 289 1 703 92 0 43 chr11 101860315 101860456 -46923016 + (TCCCC)n Simple_repeat Simple_repeat 5 139 0 207 162 0 0 chr11 101860456 101860493 -46922979 + T-rich Low_complexity Low_complexity 4 40 0 440 188 10 10 chr11 101860495 101860581 -46922891 - AluSp/q SINE Alu -1 312 224 1468 138 0 9 chr11 101860581 101860805 -46922667 + AluJo SINE Alu 86 307 -5 440 188 10 10 chr11 101860805 101860819 -46922653 - AluSp/q SINE Alu -88 225 212 321 26 0 0 chr11 101860834 101860872 -46922600 + (TC)n Simple_repeat Simple_repeat 2 39 0 272 182 55 9 chr11 101860872 101860982 -46922490 + (TA)n Simple_repeat Simple_repeat 2 116 0 237 122 44 61 chr11 101861010 101861191 -46922281 + (TTATA)n Simple_repeat Simple_repeat 2 179 0 460 91 16 50 chr11 101861208 101861329 -46922143 + (TCTA)n Simple_repeat Simple_repeat 1 117 0 2196 116 0 3 chr11 101861352 101861644 -46921828 + AluSg SINE Alu 1 291 -19 309 131 10 50 chr11 101861644 101861743 -46921729 + (TA)n Simple_repeat Simple_repeat 2 96 0 408 40 0 0 chr11 101861787 101861837 -46921635 + (CA)n Simple_repeat Simple_repeat 2 51 0 821 328 61 17 chr11 101861844 101862256 -46921216 - L1M4 LINE L1 -2389 3757 3328 613 294 106 20 chr11 101862276 101862633 -46920839 + L2 LINE L2 2034 2421 -893 2546 211 22 88 chr11 101862721 101863174 -46920298 - L1PA16 LINE L1 0 6166 5788 2239 128 0 0 chr11 101863174 101863472 -46920000 - AluSx SINE Alu -14 298 1 2546 211 22 88 chr11 101863472 101863824 -46919648 - L1PA16 LINE L1 -378 5788 5414 311 89 18 0 chr11 101863950 101864006 -46919466 - L1PB1 LINE L1 -5 6146 6090 885 141 0 0 chr11 101864439 101864581 -46918891 - L1PB1 LINE L1 -45 6106 5965 406 179 0 0 chr11 101864582 101864672 -46918800 - AluY SINE Alu 0 303 214 2241 119 0 0 chr11 101864689 101864983 -46918489 - AluY SINE Alu -17 294 1 1059 88 112 0 chr11 101864984 101865154 -46918318 - L1PB1 LINE L1 -174 5977 5789 204 158 0 0 chr11 101865194 101865232 -46918240 + CT-rich Low_complexity Low_complexity 1 38 0 1501 174 42 8 chr11 101865234 101865493 -46917979 - AluJb SINE Alu -10 302 35 600 123 75 28 chr11 101865493 101865599 -46917873 - AluJo SINE Alu -116 196 86 1382 154 37 9 chr11 101865599 101865813 -46917659 - AluJo SINE Alu -92 220 1 831 342 103 17 chr11 101866003 101866523 -46916949 - MLT1E2 LTR MaLR 0 626 62 941 215 10 19 chr11 101866523 101866732 -46916740 + MER39B LTR ERV1 1 207 -446 345 168 26 124 chr11 101866702 101866774 -46916698 + MER39B LTR ERV1 106 165 -488 * 2318 108 3 0 chr11 101866774 101867080 -46916392 + AluSx SINE Alu 1 307 -5 345 168 26 124 chr11 101867080 101867120 -46916352 + MER39B LTR ERV1 165 207 -446 * 358 186 14 0 chr11 101867089 101867159 -46916313 + MER39B LTR ERV1 106 176 -477 1381 96 0 0 chr11 101867161 101867338 -46916134 + AluSg/x SINE Alu 134 310 0 325 181 26 112 chr11 101867361 101867436 -46916036 + MER39B LTR ERV1 102 165 -488 2137 125 3 0 chr11 101867436 101867732 -46915740 + AluSx SINE Alu 1 297 -15 325 181 26 112 chr11 101867732 101867772 -46915700 + MER39B LTR ERV1 165 207 -446 * 340 188 29 0 chr11 101867742 101867811 -46915661 + MER39B LTR ERV1 106 176 -477 2397 90 3 0 chr11 101867813 101868124 -46915348 + AluSx SINE Alu 1 312 0 288 247 14 0 chr11 101868156 101868229 -46915243 + MER39B LTR ERV1 103 176 -477 2350 84 0 0 chr11 101868231 101868529 -46914943 + AluSx SINE Alu 1 298 -14 2693 171 39 19 chr11 101868538 101868999 -46914473 + MER39B LTR ERV1 106 581 -72 2543 69 3 0 chr11 101868999 101869303 -46914169 - AluSx SINE Alu -7 305 1 2693 171 39 19 chr11 101869303 101869378 -46914094 + MER39B LTR ERV1 581 653 0 225 284 15 0 chr11 101869378 101869422 -46914050 - MLT1E2 LTR MaLR -434 71 27 273 119 0 0 chr11 101870280 101870322 -46913150 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 1284 106 0 0 chr11 101870323 101870686 -46912786 + (TGGA)n Simple_repeat Simple_repeat 1 363 0 23 68 0 0 chr11 101871151 101871195 -46912277 + GC_rich Low_complexity Low_complexity 1 44 0 387 0 0 0 chr11 101872865 101872908 -46910564 + (GA)n Simple_repeat Simple_repeat 2 44 0 879 96 0 0 chr11 101873627 101873806 -46909666 + L1PA5 LINE L1 6012 6190 0 446 84 65 0 chr11 101874148 101874255 -46909217 + GA-rich Low_complexity Low_complexity 2 115 0 866 85 25 28 chr11 101874258 101874796 -46908676 + (GA)n Simple_repeat Simple_repeat 1 536 0 672 122 37 0 chr11 101874803 101874967 -46908505 + GA-rich Low_complexity Low_complexity 2 171 0 209 111 28 0 chr11 101875884 101875920 -46907552 + T-rich Low_complexity Low_complexity 3 39 0 530 93 0 46 chr11 101876151 101876259 -46907213 + (TTTC)n Simple_repeat Simple_repeat 1 103 0 788 61 0 38 chr11 101876312 101876444 -46907028 + (TTTC)n Simple_repeat Simple_repeat 1 127 0 624 195 0 0 chr11 101880971 101881130 -46902342 + CT-rich Low_complexity Low_complexity 2 160 0 2488 81 0 0 chr11 101883037 101883374 -46900098 - AluSx SINE Alu 0 312 1 26 0 0 0 chr11 101886377 101886403 -46897069 + GC_rich Low_complexity Low_complexity 1 26 0 301 244 151 17 chr11 101886551 101886670 -46896802 - L1MC4 LINE L1 -1295 6747 6613 249 33 0 0 chr11 101887397 101887427 -46896045 + (GA)n Simple_repeat Simple_repeat 1 30 0 345 181 35 46 chr11 101887661 101887839 -46895633 - L1MC4 LINE L1 -1337 6985 1994 * 408 269 71 60 chr11 101887797 101888100 -46895372 + L1MC4 LINE L1 5659 6703 -151 366 238 0 67 chr11 101888009 101888114 -46895358 - L1MC4 LINE L1 -1334 6708 6611 337 303 0 61 chr11 101888080 101888179 -46895293 + L1MC4 LINE L1 6613 6705 -1337 * 216 0 0 0 chr11 101888320 101888344 -46895128 + (TA)n Simple_repeat Simple_repeat 2 25 0 2213 104 3 14 chr11 101891094 101891420 -46892052 + AluSx SINE Alu 1 312 0 2297 116 0 0 chr11 101891437 101891747 -46891725 + AluSx SINE Alu 1 310 -2 1593 81 12 65 chr11 101891750 101891996 -46891476 + AluY SINE Alu 79 311 0 939 115 15 0 chr11 101892654 101892784 -46890688 + AluSq/x SINE Alu 1 132 -181 2115 99 31 27 chr11 101892785 101893079 -46890393 + AluSx SINE Alu 5 299 -13 212 143 0 0 chr11 101895841 101895876 -46887596 + (CCG)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chr11 101895954 101895982 -46887490 + GC_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr11 101896708 101896729 -46886743 + (T)n Simple_repeat Simple_repeat 1 21 0 27 29 0 0 chr11 101896838 101896872 -46886600 + AT_rich Low_complexity Low_complexity 1 34 0 2111 90 0 4 chr11 101897192 101897470 -46886002 - AluSx SINE Alu -2 310 34 1464 98 0 10 chr11 101898391 101898584 -46884888 - AluSq SINE Alu -20 293 103 547 110 0 12 chr11 101898584 101898666 -46884806 - AluY SINE Alu -130 181 101 478 132 0 13 chr11 101898666 101898742 -46884730 - AluY SINE Alu -120 181 107 543 138 0 11 chr11 101898742 101898829 -46884643 - AluY SINE Alu -124 187 102 518 149 0 11 chr11 101898824 101898911 -46884561 - AluY SINE Alu -124 187 102 * 488 165 0 12 chr11 101898906 101898991 -46884481 - AluY SINE Alu -124 187 104 * 1248 122 0 21 chr11 101898991 101899180 -46884292 - AluSq SINE Alu -128 185 1 2112 135 3 3 chr11 101899543 101899993 -46883479 - AluSx SINE Alu 0 450 1 252 0 0 0 chr11 101901448 101901476 -46881996 + (A)n Simple_repeat Simple_repeat 1 28 0 214 182 0 0 chr11 101902044 101902088 -46881384 + A-rich Low_complexity Low_complexity 1 44 0 198 0 0 0 chr11 101902298 101902320 -46881152 + (A)n Simple_repeat Simple_repeat 1 22 0 1863 79 0 20 chr11 101902579 101902831 -46880641 - AluSg SINE Alu -15 295 49 22 0 0 0 chr11 101902943 101902965 -46880507 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 101902994 101903015 -46880457 + AT_rich Low_complexity Low_complexity 1 21 0 2417 89 0 13 chr11 101903622 101903935 -46879537 + AluSx SINE Alu 1 309 -3 21 0 0 0 chr11 101904286 101904307 -46879165 + AT_rich Low_complexity Low_complexity 1 21 0 263 188 0 0 chr11 101904754 101904802 -46878670 - MADE1 DNA Mariner -26 54 7 729 129 8 8 chr11 101904824 101904948 -46878524 + AluJ SINE Alu 2 125 -187 328 90 0 128 chr11 101904954 101905032 -46878440 + L1PA10 LINE L1 6101 6168 0 290 117 0 54 chr11 101905032 101905100 -46878372 + L1PBa LINE L1 2922 2986 -3876 731 217 0 37 chr11 101905268 101905345 -46878127 + AluJ SINE Alu 117 195 -117 2362 93 3 10 chr11 101905345 101905655 -46877817 - AluSx SINE Alu -4 308 1 731 217 0 37 chr11 101905655 101905766 -46877706 + AluJ SINE Alu 195 298 -14 2182 96 7 3 chr11 101905779 101906061 -46877411 - AluSc SINE Alu -13 296 14 805 151 34 14 chr11 101906061 101906207 -46877265 + AluJo SINE Alu 72 220 -92 360 0 0 0 chr11 101906225 101906265 -46877207 + (TC)n Simple_repeat Simple_repeat 2 41 0 225 0 0 0 chr11 101906264 101906289 -46877183 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 1289 147 132 26 chr11 101906524 101906789 -46876683 + AluJb SINE Alu 1 293 -9 1208 164 37 9 chr11 101906794 101907008 -46876464 + AluJo SINE Alu 1 220 -92 923 260 20 23 chr11 101907060 101907199 -46876273 + AluJo SINE Alu 2 140 -162 2462 54 0 7 chr11 101907199 101907493 -46875979 + AluY SINE Alu 9 300 -11 923 260 20 23 chr11 101907493 101907653 -46875819 + AluJo SINE Alu 140 300 -2 473 116 0 0 chr11 101907662 101907731 -46875741 + AluJo SINE Alu 228 296 -16 464 127 0 0 chr11 101907740 101907811 -46875661 + AluJ/FRAM SINE Alu 228 298 -14 274 204 0 0 chr11 101907820 101907869 -46875603 + AluJ/FRAM SINE Alu 228 276 -26 2315 97 0 0 chr11 101908700 101908989 -46874483 - AluSx SINE Alu -23 289 1 2588 54 0 0 chr11 101909186 101909483 -46873989 - AluY SINE Alu -14 297 1 2378 95 0 0 chr11 101909483 101909778 -46873694 - AluSq SINE Alu -18 295 1 1941 154 0 16 chr11 101909786 101910091 -46873381 - AluJo SINE Alu -4 308 9 201 161 0 0 chr11 101910175 101910206 -46873266 + (TG)n Simple_repeat Simple_repeat 1 31 0 1128 133 42 0 chr11 101910312 101910478 -46872994 - AluSg/x SINE Alu -5 307 135 2119 111 10 0 chr11 101910479 101910767 -46872705 - AluSx SINE Alu -21 291 1 2269 118 3 6 chr11 101910767 101911080 -46872392 - AluSq SINE Alu -1 312 1 324 128 0 0 chr11 101911305 101911352 -46872120 + Alu SINE Alu 240 286 -16 186 43 0 0 chr11 101911353 101911376 -46872096 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 1261 165 0 10 chr11 101912099 101912305 -46871167 + AluJb SINE Alu 107 310 -2 2212 92 0 0 chr11 101912425 101912728 -46870744 + AluY SINE Alu 1 303 0 447 338 50 5 chr11 101913293 101913512 -46869960 - L1MB5 LINE L1 -59 6115 5887 184 194 0 45 chr11 101913512 101913579 -46869893 + (TATATG)n Simple_repeat Simple_repeat 5 68 0 324 264 36 11 chr11 101913579 101913718 -46869754 + L1MC4 LINE L1 1995 6983 -1339 314 273 68 11 chr11 101913709 101913797 -46869675 - L1MC4 LINE L1 -1337 6705 6613 * 342 196 0 147 chr11 101913763 101913865 -46869607 + L1MC4 LINE L1 6617 6703 -1339 * 343 257 9 24 chr11 101913846 101913969 -46869503 + L1MC4 LINE L1 1996 6983 -1339 * 366 304 0 22 chr11 101913923 101914015 -46869457 - L1MC4 LINE L1 -1339 6703 6614 361 286 0 22 chr11 101913975 101914066 -46869406 + L1MC4 LINE L1 6614 6702 -1340 * 311 310 0 35 chr11 101914039 101914126 -46869346 - L1MC4 LINE L1 -1339 6703 6620 * 2270 96 0 3 chr11 101914679 101914972 -46868500 - AluSc SINE Alu -17 292 1 382 31 0 4 chr11 101914974 101915028 -46868444 - AluSq/x SINE Alu -170 133 86 877 213 160 0 chr11 101915028 101915216 -46868256 - AluJo SINE Alu -92 220 3 2266 117 7 0 chr11 101915231 101915405 -46868067 - AluSg SINE Alu 0 310 132 2402 84 0 0 chr11 101915405 101915703 -46867769 - AluY SINE Alu -13 298 1 2266 117 7 0 chr11 101915703 101915836 -46867636 - AluSg SINE Alu -178 132 1 500 208 57 133 chr11 101916086 101916403 -46867069 + MLT1C LTR MaLR 69 345 -122 399 167 53 9 chr11 101916472 101916584 -46866888 + MLT1D LTR MaLR 217 361 -122 1109 222 80 48 chr11 101916604 101916978 -46866494 + MLT1C LTR MaLR 11 396 -71 277 249 54 2 chr11 101916959 101917067 -46866405 + MLT1C LTR MaLR 300 396 -71 * 261 242 42 21 chr11 101917061 101917156 -46866316 + MLT1C LTR MaLR 300 396 -71 * 396 277 48 7 chr11 101917137 101917310 -46866162 + MLT1C LTR MaLR 300 463 -4 610 165 35 0 chr11 101918809 101918924 -46864548 - AluJb SINE Alu -20 292 174 32 0 0 43 chr11 101918933 101918965 -46864507 + AT_rich Low_complexity Low_complexity 1 32 -13 2292 90 3 0 chr11 101918965 101919253 -46864219 - AluY SINE Alu -22 289 1 32 0 0 43 chr11 101919253 101919267 -46864205 + AT_rich Low_complexity Low_complexity 32 45 0 28 29 0 0 chr11 101919298 101919333 -46864139 + AT_rich Low_complexity Low_complexity 1 35 0 1856 91 0 0 chr11 101919383 101919637 -46863835 - L1PA8 LINE L1 -26 6146 5893 4586 80 2 3 chr11 101919637 101920275 -46863197 + L1PA7 LINE L1 5504 6141 -13 210 37 0 0 chr11 101920279 101920306 -46863166 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1923 112 56 24 chr11 101920306 101920612 -46862860 + AluSg SINE Alu 1 310 0 2110 99 7 3 chr11 101920614 101920932 -46862540 + AluSq SINE Alu 1 319 0 2080 107 4 0 chr11 101921609 101921889 -46861583 - AluSx SINE Alu 0 312 32 2473 78 3 0 chr11 101921976 101922284 -46861188 - AluSx SINE Alu -3 309 1 1039 92 0 0 chr11 101923596 101923726 -46859746 + AluSq/x SINE Alu 1 130 -183 1516 104 68 0 chr11 101923730 101923951 -46859521 + AluY SINE Alu 1 236 -75 1868 93 4 0 chr11 101973951 101974187 -46809285 - AluSq SINE Alu -76 237 1 2279 128 0 0 chr11 101974376 101974682 -46808790 + AluSg SINE Alu 1 306 -4 1671 189 0 0 chr11 101974692 101974973 -46808499 + AluJb SINE Alu 2 282 -30 186 43 0 0 chr11 101974977 101975000 -46808472 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1498 115 0 0 chr11 101975078 101975278 -46808194 - AluSq SINE Alu -111 202 3 22 56 0 0 chr11 101976807 101976843 -46806629 + AT_rich Low_complexity Low_complexity 1 36 0 2304 81 0 0 chr11 101976858 101977143 -46806329 - AluY SINE Alu -6 305 21 1494 204 0 37 chr11 101977157 101977456 -46806016 - AluJb SINE Alu -24 288 1 1153 194 0 31 chr11 101977512 101977739 -46805733 - AluJo SINE Alu -92 220 1 678 202 54 142 chr11 101977748 101978065 -46805407 - L1MA8 LINE L1 -6 6285 5997 1270 172 0 35 chr11 101981311 101981543 -46801929 - Charlie3 DNA MER1_type -2458 252 29 2141 115 0 23 chr11 101982306 101982611 -46800861 + AluSx SINE Alu 1 298 -14 2167 126 0 28 chr11 101982640 101982957 -46800515 + AluSx SINE Alu 1 308 -4 722 266 78 83 chr11 101983014 101983409 -46800063 + MLT2B1 LTR ERVL 5 397 -123 568 238 0 8 chr11 101983413 101983659 -46799813 + MLT2B1 LTR ERVL 269 397 -123 521 259 0 15 chr11 101983629 101983760 -46799712 + MLT2B1 LTR ERVL 269 397 -123 * 628 225 12 12 chr11 101983730 101983973 -46799499 + MLT2B1 LTR ERVL 269 459 -95 621 202 0 8 chr11 101983981 101984161 -46799311 + MLT2B1 LTR ERVL 269 397 -123 * 625 223 0 8 chr11 101984131 101984261 -46799211 + MLT2B1 LTR ERVL 269 397 -123 554 231 0 8 chr11 101984231 101984461 -46799011 + MLT2B1 LTR ERVL 269 397 -123 * 540 242 1 13 chr11 101984439 101984661 -46798811 + MLT2B1 LTR ERVL 267 397 -123 * 624 220 0 14 chr11 101984645 101984811 -46798661 + MLT2B1 LTR ERVL 269 443 -111 556 248 0 15 chr11 101984781 101984961 -46798511 + MLT2B1 LTR ERVL 269 443 -111 * 588 251 0 24 chr11 101984931 101985212 -46798260 + MLT2B1 LTR ERVL 269 443 -111 556 243 0 14 chr11 101985182 101985412 -46798060 + MLT2B1 LTR ERVL 269 443 -111 * 559 238 9 10 chr11 101985382 101985663 -46797809 + MLT2B1 LTR ERVL 269 423 -97 * 810 243 13 13 chr11 101985633 101985950 -46797522 + MLT2B1 LTR ERVL 269 481 -39 405 78 44 22 chr11 101985950 101986040 -46797432 + (TCTA)n Simple_repeat Simple_repeat 3 94 0 247 207 61 0 chr11 101986078 101986160 -46797312 + (TCTA)n Simple_repeat Simple_repeat 2 88 0 2238 117 10 3 chr11 101986161 101986470 -46797002 - AluSq SINE Alu -2 311 1 2274 149 32 0 chr11 101986624 101987026 -46796446 - MSTC LTR MaLR -13 415 1 571 105 0 23 chr11 101987367 101987453 -46796019 - AluSg SINE Alu -190 120 37 1079 68 27 9 chr11 101988097 101988319 -46795153 + (TAGA)n Simple_repeat Simple_repeat 1 226 0 631 167 0 9 chr11 101988319 101988427 -46795045 + Charlie3 DNA MER1_type 2600 2706 -4 790 175 13 206 chr11 101988476 101988656 -46794816 + MLT1B LTR MaLR 204 322 -68 3159 167 4 15 chr11 101988656 101989189 -46794283 - MER1A DNA MER1_type 0 527 1 790 175 13 206 chr11 101989189 101989247 -46794225 + MLT1B LTR MaLR 322 390 0 2229 101 3 3 chr11 101989400 101989696 -46793776 + AluSq SINE Alu 1 296 -17 2165 111 3 3 chr11 101989719 101990008 -46793464 + AluSq SINE Alu 13 301 -12 2074 123 0 31 chr11 101990020 101990356 -46793116 + AluSg SINE Alu 1 310 0 186 43 0 0 chr11 101990430 101990453 -46793019 + (T)n Simple_repeat Simple_repeat 1 23 0 324 265 113 33 chr11 101990973 101991080 -46792392 + HAL1 LINE L1 1139 1263 -1244 1123 85 17 0 chr11 101991080 101991257 -46792215 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 324 265 113 33 chr11 101991257 101991300 -46792172 + HAL1 LINE L1 1263 1301 -1206 2454 88 0 3 chr11 101991302 101991655 -46791817 + AluSc SINE Alu 1 352 0 1800 158 0 18 chr11 101991688 101992008 -46791464 - AluJo SINE Alu 0 323 9 784 246 5 15 chr11 101992199 101992394 -46791078 + MER58A DNA MER1_type 32 224 0 2218 104 7 7 chr11 101992443 101992795 -46790677 - AluSg SINE Alu 0 352 1 95 77 0 0 chr11 101992796 101993003 -46790469 + AT_rich Low_complexity Low_complexity 1 207 0 242 263 45 0 chr11 101993003 101993159 -46790313 + (TA)n Simple_repeat Simple_repeat 2 164 0 73 76 0 0 chr11 101993164 101993321 -46790151 + AT_rich Low_complexity Low_complexity 1 157 0 381 264 132 0 chr11 101993938 101994044 -46789428 + FLAM_C SINE Alu 1 120 -13 1137 179 0 10 chr11 101994119 101994320 -46789152 - AluSg/x SINE Alu 0 310 112 2165 107 0 0 chr11 101994467 101994757 -46788715 - AluSx SINE Alu -22 290 1 2349 87 0 7 chr11 101995911 101996220 -46787252 - AluSq SINE Alu -6 307 1 460 189 0 0 chr11 101996297 101996371 -46787101 + AluJ/FLAM SINE Alu 2 75 -237 1365 177 87 21 chr11 101996460 101996748 -46786724 - AluSg SINE Alu -3 307 1 2327 84 17 0 chr11 101996910 101997209 -46786263 + AluY SINE Alu 1 304 -7 2511 96 0 0 chr11 101997251 101997563 -46785909 - AluSx SINE Alu 0 312 1 1721 151 3 14 chr11 101999919 102000203 -46783269 + AluSx SINE Alu 1 281 -31 2238 91 3 0 chr11 102000208 102000516 -46782956 - AluY SINE Alu 0 311 3 210 167 0 0 chr11 102000530 102000566 -46782906 + A-rich Low_complexity Low_complexity 1 36 0 263 240 130 65 chr11 102000752 102000906 -46782566 + L2 LINE L2 2570 2733 -581 2360 179 10 75 chr11 102000909 102001011 -46782461 + MER66B LTR ERV1 1 108 -378 1890 139 78 26 chr11 102001011 102001356 -46782116 + THE1B LTR MaLR 1 363 -1 2360 179 10 75 chr11 102001356 102001668 -46781804 + MER66B LTR ERV1 108 377 -109 4809 79 2 0 chr11 102001668 102002288 -46781184 + L1PA7 LINE L1 5534 6154 0 2360 179 10 75 chr11 102002288 102002392 -46781080 + MER66B LTR ERV1 377 486 0 416 163 12 0 chr11 102002639 102002725 -46780747 + CT-rich Low_complexity Low_complexity 3 89 0 1345 221 66 31 chr11 102002747 102003128 -46780344 - MLT1C LTR MaLR -34 433 40 1156 241 77 25 chr11 102003108 102003510 -46779962 - MLT1C LTR MaLR -40 427 5 * 865 263 70 18 chr11 102003521 102003852 -46779620 - MLT1C LTR MaLR -119 348 1 381 187 112 75 chr11 102004719 102004763 -46778709 + MER49 LTR ERV1 1 42 -881 2155 100 0 0 chr11 102004763 102005054 -46778418 - AluSg SINE Alu -19 291 1 381 187 112 75 chr11 102005054 102005108 -46778364 + MER49 LTR ERV1 42 103 -820 1639 210 41 31 chr11 102005108 102005447 -46778025 + MLT2A2 LTR ERVL 1 361 -193 1496 64 0 0 chr11 102005447 102005635 -46777837 - AluY SINE Alu -47 264 77 1639 210 41 31 chr11 102005635 102005782 -46777690 + MLT2A2 LTR ERVL 361 505 -49 2102 87 3 3 chr11 102005782 102006071 -46777401 - AluSg SINE Alu -17 293 5 984 105 0 0 chr11 102006079 102006212 -46777260 - AluSp SINE Alu -180 133 1 401 119 0 0 chr11 102006212 102006279 -46777193 + MLT2A2 LTR ERVL 385 451 -2 908 180 16 86 chr11 102006283 102006528 -46776944 + MER4D LTR ERV1 97 324 -579 1140 126 0 0 chr11 102006528 102006695 -46776777 + AluSg SINE Alu 1 167 -143 23 33 0 0 chr11 102006766 102006796 -46776676 + AT_rich Low_complexity Low_complexity 1 30 0 1116 190 0 26 chr11 102006881 102007000 -46776472 + AluJo SINE Alu 1 122 -190 207 0 0 0 chr11 102007000 102007023 -46776449 + (TA)n Simple_repeat Simple_repeat 2 24 0 2327 58 0 0 chr11 102007023 102007314 -46776158 - AluY SINE Alu -20 291 1 1116 190 0 26 chr11 102007314 102007419 -46776053 + AluJo SINE Alu 120 220 -92 244 150 0 0 chr11 102007419 102007459 -46776013 + Alu SINE Alu 86 125 -177 1012 227 0 9 chr11 102007465 102007685 -46775787 + AluJo SINE Alu 3 220 -92 23 0 0 0 chr11 102007716 102007739 -46775733 + AT_rich Low_complexity Low_complexity 1 23 0 539 276 0 0 chr11 102007739 102007855 -46775617 + FLAM_A SINE Alu 2 117 -16 1421 70 0 0 chr11 102007858 102008044 -46775428 - AluY SINE Alu -6 305 120 773 173 45 56 chr11 102008059 102008417 -46775055 + FRAM SINE Alu 1 176 0 207 162 0 0 chr11 102009055 102009092 -46774380 + (CA)n Simple_repeat Simple_repeat 2 38 0 234 217 58 14 chr11 102009178 102009247 -46774225 + (CATG)n Simple_repeat Simple_repeat 1 72 0 206 225 0 0 chr11 102009320 102009360 -46774112 + (CA)n Simple_repeat Simple_repeat 1 40 0 180 111 0 0 chr11 102009477 102009504 -46773968 + (CA)n Simple_repeat Simple_repeat 2 28 0 247 307 27 0 chr11 102009577 102009652 -46773820 + (CACG)n Simple_repeat Simple_repeat 3 79 0 * 254 259 0 0 chr11 102009599 102009653 -46773819 + (CA)n Simple_repeat Simple_repeat 1 54 0 213 228 76 13 chr11 102009739 102009818 -46773654 + (CATG)n Simple_repeat Simple_repeat 1 84 0 239 239 0 0 chr11 102009891 102009937 -46773535 + (CA)n Simple_repeat Simple_repeat 1 46 0 202 325 0 13 chr11 102010037 102010114 -46773358 + (CA)n Simple_repeat Simple_repeat 1 76 0 1533 141 98 0 chr11 102010319 102010595 -46772877 - AluSx SINE Alu 0 304 4 741 187 0 0 chr11 102010607 102010741 -46772731 - L1PB4 LINE L1 -7 6149 6016 1183 106 0 50 chr11 102010741 102010940 -46772532 - AluSx SINE Alu -123 189 1 639 157 0 0 chr11 102010940 102011048 -46772424 - L1PB4 LINE L1 -468 5688 5581 701 163 6 23 chr11 102011529 102011701 -46771771 + GA-rich Low_complexity Low_complexity 4 172 0 183 204 0 0 chr11 102011722 102011766 -46771706 + GA-rich Low_complexity Low_complexity 1 44 0 326 117 27 45 chr11 102011827 102011938 -46771534 + (TCTA)n Simple_repeat Simple_repeat 1 109 0 1045 57 34 25 chr11 102011959 102012269 -46771203 + (TCTA)n Simple_repeat Simple_repeat 1 492 0 1000 45 34 22 chr11 102012269 102012447 -46771025 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 866 52 39 13 chr11 102012513 102012668 -46770804 + (TCTA)n Simple_repeat Simple_repeat 3 161 0 209 100 50 17 chr11 102012681 102012741 -46770731 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 597 184 15 7 chr11 102012748 102012884 -46770588 - L1MB4 LINE L1 0 6180 6044 198 0 0 0 chr11 102013163 102013185 -46770287 + (TC)n Simple_repeat Simple_repeat 2 23 0 270 301 86 38 chr11 102113686 102113895 -46669577 - L2 LINE L2 -250 3022 2804 189 107 0 0 chr11 102114544 102114572 -46668900 + (A)n Simple_repeat Simple_repeat 1 28 0 180 77 0 0 chr11 102114868 102114894 -46668578 + (CA)n Simple_repeat Simple_repeat 1 26 0 467 279 32 32 chr11 102115475 102115629 -46667843 - MIR3 SINE MIR -49 159 6 457 353 105 41 chr11 102115881 102116300 -46667172 + L2 LINE L2 2826 3271 -1 2071 115 13 0 chr11 102117099 102117403 -46666069 - AluSp SINE Alu -5 308 1 464 276 96 0 chr11 102117561 102117717 -46665755 + MIR SINE MIR 2 172 -90 371 219 14 13 chr11 102117717 102117813 -46665659 - MER58 DNA MER1_type -1 2419 114 335 346 44 7 chr11 102118482 102118618 -46664854 - L2 LINE L2 -17 3255 3115 185 290 69 48 chr11 102118983 102119128 -46664344 + L2 LINE L2 2829 2976 -296 637 204 61 77 chr11 102119394 102119575 -46663897 + MER5B DNA MER1_type 1 178 0 269 300 44 0 chr11 102119601 102119691 -46663781 + MIR SINE MIR 168 261 -1 249 245 0 0 chr11 102119726 102119779 -46663693 + L2 LINE L2 3261 3313 0 619 206 30 85 chr11 102119879 102120044 -46663428 + MER97b DNA MER1_type? 21 176 -877 21 0 0 0 chr11 102120193 102120214 -46663258 + AT_rich Low_complexity Low_complexity 1 21 0 224 330 176 30 chr11 102120594 102120991 -46662481 + L2 LINE L2 2818 3272 0 272 330 83 0 chr11 102121049 102121158 -46662314 + L2 LINE L2 3191 3308 -5 216 346 12 12 chr11 102121502 102121583 -46661889 + MER5A DNA MER1_type 109 189 0 883 224 69 26 chr11 102121585 102121817 -46661655 + MIR SINE MIR 13 254 -8 291 319 9 9 chr11 102122067 102122183 -46661289 + MIR3 SINE MIR 83 198 -10 307 228 18 114 chr11 102124044 102124158 -46659314 - MIR SINE MIR -112 150 48 635 308 18 0 chr11 102124248 102124417 -46659055 - MIR SINE MIR -71 191 20 779 178 129 0 chr11 102126499 102126662 -46656810 - MER20 DNA MER1_type -1 218 35 195 42 0 0 chr11 102127355 102127379 -46656093 + (TAA)n Simple_repeat Simple_repeat 3 26 0 389 261 59 0 chr11 102127380 102127499 -46655973 - MIR SINE MIR -8 254 129 678 184 14 41 chr11 102127500 102127647 -46655825 - L2 LINE L2 -5 3308 3166 1139 252 111 52 chr11 102128628 102129203 -46654269 - MLT1L LTR MaLR -6 609 1 401 329 67 7 chr11 102129811 102129960 -46653512 - L2 LINE L2 -4 3268 3111 25 31 0 0 chr11 102130131 102130163 -46653309 + AT_rich Low_complexity Low_complexity 1 32 0 665 266 109 41 chr11 102130634 102130972 -46652500 + MLT1L LTR MaLR 253 613 -2 2031 154 86 28 chr11 102131582 102131672 -46651800 - L1MB2 LINE L1 -39 6132 6049 2469 156 97 43 chr11 102131672 102132165 -46651307 + MLT2B1 LTR ERVL 1 520 0 2031 154 86 28 chr11 102132165 102132469 -46651003 - L1MB2 LINE L1 -122 6049 5715 2156 113 57 104 chr11 102133091 102133561 -46649911 + LTR7 LTR ERV1 1 448 -2 10441 106 29 15 chr11 102133563 102135705 -46647767 + HERVH LTR ERV1 1 2111 -5602 198 0 0 0 chr11 102135839 102135861 -46647611 + (A)n Simple_repeat Simple_repeat 1 22 0 1032 247 84 0 chr11 102136117 102136356 -46647116 + MIR SINE MIR 2 260 -2 256 140 60 0 chr11 102136997 102137047 -46646425 - L2 LINE L2 0 3313 3261 536 340 61 25 chr11 102137383 102137777 -46645695 - ERVL LTR ERVL -660 5104 4697 495 298 18 6 chr11 102137795 102137966 -46645506 - LTR16B LTR ERVL -4 460 288 361 250 12 0 chr11 102138221 102138301 -46645171 - L2 LINE L2 -49 3223 3143 542 231 108 42 chr11 102138420 102138632 -46644840 + MIR SINE MIR 9 234 -28 491 351 15 5 chr11 102139656 102139861 -46643611 - MIR SINE MIR -15 247 41 340 361 107 30 chr11 102139909 102140416 -46643056 + L2 LINE L2 2412 2957 -357 186 103 0 0 chr11 102141256 102141285 -46642187 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 190 150 125 0 chr11 102141725 102141765 -46641707 - L2 LINE L2 -18 3295 3251 * 336 224 71 20 chr11 102141734 102141832 -46641640 - MIR SINE MIR -24 238 136 466 318 109 7 chr11 102141896 102142103 -46641369 - MIR SINE MIR -29 233 8 563 271 52 21 chr11 102142477 102142644 -46640828 + L1MDa LINE L1 34 209 -6331 1888 215 39 28 chr11 102142644 102143034 -46640438 - MSTD LTR MaLR -2 394 1 563 271 52 21 chr11 102143034 102143058 -46640414 + L1MDa LINE L1 209 231 -6309 * 2248 241 34 4 chr11 102143048 102143542 -46639930 - MSTD-int LTR MaLR -15 1720 1212 875 180 16 46 chr11 102143538 102143732 -46639740 - MSTD-int LTR MaLR -1546 189 2 * 2358 203 5 0 chr11 102143734 102144128 -46639344 - MSTD LTR MaLR 0 396 1 375 268 12 0 chr11 102144129 102144211 -46639261 + L1MDa LINE L1 197 279 -6261 10124 219 37 35 chr11 102144596 102145056 -46638416 + L1MDa LINE L1 847 1305 -5235 1651 155 0 4 chr11 102145056 102145301 -46638171 + AluSx SINE Alu 6 249 -63 10124 219 37 35 chr11 102145301 102145804 -46637668 + L1MDa LINE L1 1305 1806 -4734 2022 136 0 0 chr11 102145804 102146207 -46637265 + AluSx SINE Alu 1 403 0 10124 219 37 35 chr11 102146207 102148620 -46634852 + L1MDa LINE L1 1806 4209 -2331 231 36 0 0 chr11 102148620 102148648 -46634824 + (GA)n Simple_repeat Simple_repeat 2 29 0 10124 219 37 35 chr11 102148648 102149856 -46633616 + L1MDa LINE L1 4209 5413 -1127 689 183 16 0 chr11 102149859 102149985 -46633487 + L1MD1 LINE L1 6115 6242 0 223 264 28 28 chr11 102150318 102150390 -46633082 - MIR SINE MIR -180 82 11 1647 239 85 55 chr11 102150698 102151300 -46632172 - L1MB7 LINE L1 -9 6175 5556 21 36 0 0 chr11 102151304 102151332 -46632140 + AT_rich Low_complexity Low_complexity 1 28 0 6614 65 21 6 chr11 102151476 102152340 -46631132 - L1PA8 LINE L1 -8 6164 5288 2252 63 0 7 chr11 102152394 102152665 -46630807 - AluY SINE Alu -13 298 30 347 187 0 0 chr11 102152824 102152899 -46630573 - L1MA10 LINE L1 -3 6331 6257 2707 73 2 71 chr11 102152912 102153308 -46630164 - L1PB1 LINE L1 -2 6149 5781 4004 120 9 24 chr11 102153460 102153481 -46629991 - L1PB1 LINE L1 -360 5791 5771 183 80 0 0 chr11 102153481 102153506 -46629966 + (TG)n Simple_repeat Simple_repeat 1 25 0 4004 120 9 24 chr11 102153506 102154662 -46628810 - L1PB1 LINE L1 -380 5771 4625 922 271 152 36 chr11 102154782 102155716 -46627756 + L1ME3A LINE L1 2771 3812 -2334 851 249 135 34 chr11 102155735 102156120 -46627352 - MLT1J1 LTR MaLR -18 428 5 1050 273 94 67 chr11 102156162 102158224 -46625248 + L1ME3A LINE L1 3876 6025 -96 30 0 0 0 chr11 102158358 102158388 -46625084 + AT_rich Low_complexity Low_complexity 1 30 0 211 292 45 11 chr11 102158756 102158845 -46624627 - MIR SINE MIR -90 172 81 324 0 0 0 chr11 102159112 102159148 -46624324 + (CA)n Simple_repeat Simple_repeat 1 36 0 204 40 0 0 chr11 102159535 102159560 -46623912 + (A)n Simple_repeat Simple_repeat 1 25 0 462 289 7 7 chr11 102159574 102159726 -46623746 + L1ME2 LINE L1 6004 6155 -9 21 0 0 0 chr11 102160970 102160991 -46622481 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr11 102161133 102161156 -46622316 + AT_rich Low_complexity Low_complexity 1 23 0 928 158 0 0 chr11 102161504 102161637 -46621835 - FLAM_C SINE Alu 0 133 1 305 292 117 29 chr11 102161716 102161887 -46621585 + MIR SINE MIR 28 213 -49 350 281 7 59 chr11 102161926 102162061 -46621411 + MIR SINE MIR 85 212 -50 189 74 0 0 chr11 102162149 102162176 -46621296 + (A)n Simple_repeat Simple_repeat 1 27 0 195 243 0 0 chr11 102162879 102162916 -46620556 + MIR SINE MIR 195 231 -31 1861 149 7 17 chr11 102162955 102163250 -46620222 - AluJo SINE Alu -20 292 1 405 236 12 141 chr11 102163928 102164056 -46619416 - L2 LINE L2 0 3313 3229 1069 179 46 5 chr11 102164056 102164252 -46619220 - MER3 DNA MER1_type -1 208 5 405 236 12 141 chr11 102164252 102164365 -46619107 - L2 LINE L2 -84 3229 3103 709 226 33 35 chr11 102164715 102164957 -46618515 - L2 LINE L2 -283 3030 2789 1182 222 148 74 chr11 102164999 102165472 -46618000 - MLT1H LTR MaLR -37 512 5 2262 277 85 11 chr11 102165475 102166225 -46617247 - L2 LINE L2 -521 2793 1988 243 196 0 0 chr11 102169017 102169063 -46614409 + MER58 DNA MER1_type 2351 2396 -24 356 281 56 38 chr11 102169166 102169326 -46614146 - MIR SINE MIR -42 220 58 1016 267 118 37 chr11 102170124 102170589 -46612883 + LTR33A LTR ERVL 4 506 -17 368 291 23 70 chr11 102170596 102170608 -46612864 - MIR SINE MIR -90 172 161 1665 235 11 21 chr11 102170608 102170986 -46612486 - MLT1A2 LTR MaLR 0 374 1 368 291 23 70 chr11 102170986 102171145 -46612327 - MIR SINE MIR -101 161 9 299 296 9 52 chr11 102171401 102171516 -46611956 - MIR SINE MIR -79 129 20 6941 160 114 40 chr11 102172634 102174101 -46609371 - MER52A LTR ERV1 0 1755 180 332 238 16 0 chr11 102174102 102174165 -46609307 - MER52A LTR ERV1 -1691 64 1 1283 223 57 37 chr11 102174829 102175317 -46608155 + MLT1E LTR MaLR 1 593 0 2110 153 46 0 chr11 102175675 102176001 -46607471 - MER2 DNA MER2_type -3 341 1 236 316 24 93 chr11 102176174 102176421 -46607051 - L2 LINE L2 -192 3080 2851 356 306 96 13 chr11 102176926 102177083 -46606389 + MIR3 SINE MIR 6 175 -33 466 273 38 8 chr11 102178120 102178252 -46605220 + MIR SINE MIR 68 203 -59 202 231 0 0 chr11 102178332 102178371 -46605101 + A-rich Low_complexity Low_complexity 5 43 0 655 291 37 11 chr11 102178389 102178578 -46604894 + MIR SINE MIR 6 199 -63 1264 233 51 13 chr11 102178580 102178893 -46604579 + MLT1J2 LTR MaLR 1 325 -125 1309 203 0 80 chr11 102179716 102180081 -46603391 - L1 LINE L1 -1510 4636 4301 * 5301 116 89 8 chr11 102180076 102181600 -46601872 - L1PBa LINE L1 -4722 2141 232 1601 238 15 0 chr11 102181603 102181931 -46601541 - L1ME1 LINE L1 -332 5903 5571 2337 250 83 7 chr11 102181938 102182637 -46600835 - L1ME1 LINE L1 -5358 1038 287 793 291 38 29 chr11 102182647 102183070 -46600402 - L1MC/D LINE L1 -698 5468 5366 187 313 15 45 chr11 102183694 102183761 -46599711 + L3 LINE CR1 1499 1563 -14 365 298 142 24 chr11 102184172 102184377 -46599095 - MIR SINE MIR 0 262 34 183 129 0 0 chr11 102184759 102184790 -46598682 + (CA)n Simple_repeat Simple_repeat 1 31 0 263 296 153 0 chr11 102185444 102185542 -46597930 - MIR SINE MIR -64 144 32 251 161 0 48 chr11 102185663 102185725 -46597747 + CT-rich Low_complexity Low_complexity 3 61 0 14918 61 5 6 chr11 102185849 102188126 -46595346 + L1P2 LINE L1 3478 5748 -406 404 227 23 0 chr11 102188783 102188871 -46594601 - L2 LINE L2 -31 3282 3193 384 59 0 0 chr11 102189278 102189329 -46594143 + (CCA)n Simple_repeat Simple_repeat 3 53 0 363 371 84 0 chr11 102189668 102189846 -46593626 - L2 LINE L2 -570 2744 2552 254 250 54 22 chr11 102190249 102190341 -46593131 + LTR16A1 LTR ERVL 377 457 0 369 93 0 0 chr11 102190483 102190537 -46592935 + (CA)n Simple_repeat Simple_repeat 1 54 0 2172 177 42 10 chr11 102191165 102191549 -46591923 - MSTD LTR MaLR 0 396 1 187 0 0 36 chr11 102191550 102191578 -46591894 - L2 LINE L2 -3 3310 3284 185 227 23 0 chr11 102191797 102191841 -46591631 - L3b LINE CR1 -349 1234 1190 1241 213 103 4 chr11 102191860 102192113 -46591359 + Tigger7 DNA MER2_type 2 279 -454 350 188 129 35 chr11 102192104 102192189 -46591283 + Tigger7 DNA MER2_type 2495 2587 0 * 527 241 35 28 chr11 102193494 102193639 -46589833 - MIR SINE MIR 0 262 117 313 294 15 44 chr11 102193885 102194021 -46589451 - MIR SINE MIR -111 151 20 270 340 237 0 chr11 102194219 102194316 -46589156 - L2 LINE L2 -16 3256 3137 184 325 158 0 chr11 102195473 102195587 -46587885 + L2 LINE L2 3181 3312 -1 36711 29 11 1 chr11 102195687 102201706 -46581766 - L1HS LINE L1 -10 6145 2 358 239 109 11 chr11 102201707 102201799 -46581673 - MER58 DNA MER1_type -114 101 1 289 324 59 29 chr11 102201921 102202091 -46581381 + MIR SINE MIR 13 187 -75 537 222 52 46 chr11 102202108 102202261 -46581211 - MER63A DNA MER1_type 0 210 57 2472 72 0 3 chr11 102202438 102202743 -46580729 - AluY SINE Alu -7 304 1 503 167 21 21 chr11 102204437 102204533 -46578939 - MIR3 SINE MIR 0 208 113 335 294 79 97 chr11 102204672 102204951 -46578521 + L2 LINE L2 2956 3229 -43 642 254 89 32 chr11 102205171 102205419 -46578053 + L2 LINE L2 3052 3313 0 1023 166 90 57 chr11 102205519 102205730 -46577742 + MER20 DNA MER1_type 1 218 -1 518 308 50 94 chr11 102205827 102206168 -46577304 + L2 LINE L2 2938 3263 -9 558 302 47 0 chr11 102207373 102207545 -46575927 + MIR SINE MIR 47 226 -36 1000 258 96 51 chr11 102207599 102207994 -46575478 - LTR16A LTR ERVL -7 443 31 2074 109 0 60 chr11 102208595 102208926 -46574546 - AluSx SINE Alu -1 311 1 203 282 42 0 chr11 102209316 102209387 -46574085 + GA-rich Low_complexity Low_complexity 5 78 0 589 340 82 8 chr11 102209541 102209785 -46573687 - MIR SINE MIR 0 262 1 554 183 9 0 chr11 102209835 102209950 -46573522 + GA-rich Low_complexity Low_complexity 3 118 0 1491 190 150 53 chr11 102210402 102210884 -46572588 + MLT1F1 LTR MaLR 38 567 0 285 321 27 33 chr11 102211329 102211513 -46571959 + L2 LINE L2 2397 2579 -735 250 249 86 0 chr11 102211513 102211612 -46571860 - MLT1I LTR MaLR 0 428 317 382 254 41 17 chr11 102211673 102211818 -46571654 - MLT1J1 LTR MaLR -190 219 67 441 296 123 41 chr11 102211853 102212194 -46571278 + L2 LINE L2 2564 2932 -382 386 267 73 52 chr11 102212668 102212900 -46570572 + L2 LINE L2 3077 3313 0 378 298 84 67 chr11 102212969 102213081 -46570391 + L2 LINE L2 2688 2797 -475 471 209 174 9 chr11 102213081 102213196 -46570276 - MER94 DNA DNA 0 134 1 378 298 84 67 chr11 102213196 102213483 -46569989 + L2 LINE L2 2797 3098 -174 2450 66 0 3 chr11 102213775 102214076 -46569396 - AluY SINE Alu -11 300 1 355 189 0 21 chr11 102214286 102214381 -46569091 + CT-rich Low_complexity Low_complexity 4 96 0 185 343 82 14 chr11 102214747 102214893 -46568579 + MIR SINE MIR 29 184 -78 493 282 90 5 chr11 102215541 102215729 -46567743 + MIR SINE MIR 19 222 -40 454 305 120 30 chr11 102216755 102217992 -46565480 + L1MC4a LINE L1 4373 5717 -404 321 229 83 96 chr11 102217998 102218238 -46565234 + L1MC4a LINE L1 5743 5981 -140 2644 145 54 5 chr11 102219431 102219837 -46563635 + MSTB LTR MaLR 1 426 0 195 353 90 16 chr11 102219952 102220074 -46563398 - MIR3 SINE MIR -64 144 14 740 246 24 0 chr11 102220376 102220543 -46562929 - MIR SINE MIR -40 222 52 234 233 29 78 chr11 102220546 102220649 -46562823 - MLT1K LTR MaLR -67 521 424 187 347 248 6 chr11 102220937 102221280 -46562192 - L2 LINE L2 -564 2750 2325 335 359 19 0 chr11 102221291 102221397 -46562075 + L2 LINE L2 3138 3245 -27 563 199 53 64 chr11 102221730 102221901 -46561571 + MIR SINE MIR 57 225 -37 318 286 77 44 chr11 102221916 102222098 -46561374 - L2 LINE L2 -1324 1990 1803 394 283 128 22 chr11 102222102 102222282 -46561190 + L2 LINE L2 3109 3307 -6 229 204 42 156 chr11 102222356 102222523 -46560949 + MER5B DNA MER1_type 1 148 -30 273 266 100 96 chr11 102223236 102223507 -46559965 + L2 LINE L2 2828 3099 -173 331 312 233 0 chr11 102223617 102223819 -46559653 - MIR SINE MIR -13 249 1 742 282 68 20 chr11 102224911 102225159 -46558313 + MIR SINE MIR 2 261 -1 383 261 22 0 chr11 102225209 102225301 -46558171 - L2 LINE L2 -43 3229 3136 200 213 32 96 chr11 102225513 102225607 -46557865 - L2 LINE L2 -251 3021 2934 347 226 97 11 chr11 102226611 102226704 -46556768 - L2 LINE L2 -2 3270 3170 366 261 9 45 chr11 102227416 102227527 -46555945 - MIR SINE MIR -126 136 30 450 169 225 21 chr11 102227614 102227756 -46555716 + MIR SINE MIR 33 203 -59 207 291 63 97 chr11 102229281 102229487 -46553985 + L2 LINE L2 2837 3035 -237 333 328 16 24 chr11 102230285 102230410 -46553062 + MIR SINE MIR 17 140 -68 2181 126 3 0 chr11 102231755 102232064 -46551408 + AluSx SINE Alu 1 310 -2 4024 139 48 3 chr11 102232064 102232726 -46550746 + L1MA5A LINE L1 5606 6297 0 182 103 0 0 chr11 102233152 102233181 -46550291 - L3 LINE CR1 -1 1576 1548 1322 274 89 11 chr11 102233573 102234022 -46549450 + LTR33 LTR ERVL 16 499 -22 19317 174 45 13 chr11 102234129 102240604 -46542868 - L1 LINE L1 -870 6695 15 21 36 0 0 chr11 102240611 102240639 -46542833 + AT_rich Low_complexity Low_complexity 1 28 0 327 220 132 76 chr11 102240720 102240933 -46542539 - MIR SINE MIR -28 234 8 1541 103 75 0 chr11 102242255 102242468 -46541004 + MER30 DNA MER1_type 1 229 -1 262 298 48 35 chr11 102243669 102243786 -46539686 + MIR SINE MIR 2 121 -87 578 115 0 31 chr11 102243880 102243976 -46539496 - L1MA9 LINE L1 -236 6076 5984 1683 164 0 21 chr11 102243979 102244259 -46539213 + AluJb SINE Alu 35 308 -4 252 259 47 59 chr11 102244486 102244571 -46538901 - MIR SINE MIR -148 114 31 487 324 62 43 chr11 102244614 102244870 -46538602 + MIR SINE MIR 1 261 -1 681 299 38 53 chr11 102245689 102246030 -46537442 - L2 LINE L2 -7 3306 2971 287 281 110 0 chr11 102246211 102246293 -46537179 - L2 LINE L2 -1 3271 3181 689 78 0 0 chr11 102246376 102246466 -46537006 + L1MA10 LINE L1 5709 5798 -536 1327 139 21 64 chr11 102246474 102246755 -46536717 + L1MA10 LINE L1 6065 6333 -1 214 171 0 24 chr11 102246770 102246811 -46536661 + (TG)n Simple_repeat Simple_repeat 2 41 0 324 289 62 21 chr11 102248489 102248586 -46534886 - L2 LINE L2 -1 3271 3171 453 19 0 0 chr11 102249240 102249294 -46534178 + (TG)n Simple_repeat Simple_repeat 2 55 0 184 222 111 0 chr11 102249593 102249647 -46533825 + L3 LINE CR1 428 487 -1090 2180 125 0 0 chr11 102251002 102251298 -46532174 + AluSx SINE Alu 1 296 -16 312 304 65 27 chr11 102252169 102252218 -46531254 + L2 LINE L2 2438 2484 -830 2455 145 2 42 chr11 102252218 102252624 -46530848 + MLT1B LTR MaLR 1 390 0 312 304 65 27 chr11 102252624 102252758 -46530714 + L2 LINE L2 2484 2628 -686 287 274 69 10 chr11 102252790 102252892 -46530580 - LTR67 LTR ERVL -23 534 427 287 197 33 0 chr11 102252898 102252959 -46530513 + L2 LINE L2 2709 2771 -543 351 241 97 68 chr11 102253302 102253509 -46529963 - MIR SINE MIR -1 261 49 198 0 0 0 chr11 102254169 102254191 -46529281 + (T)n Simple_repeat Simple_repeat 1 22 0 203 171 0 0 chr11 102254722 102254757 -46528715 + CT-rich Low_complexity Low_complexity 2 36 0 257 279 128 35 chr11 102255527 102255613 -46527859 + MIR SINE MIR 84 178 -30 590 213 125 44 chr11 102256736 102256896 -46526576 - MER69A DNA AcHobo -3 174 2 2295 195 49 7 chr11 102257223 102257670 -46525802 + MLT1C LTR MaLR 2 467 0 2164 103 7 24 chr11 102257946 102258261 -46525211 - AluSq SINE Alu 0 310 1 389 354 88 12 chr11 102258982 102259222 -46524250 + MIR SINE MIR 5 262 0 1465 195 29 57 chr11 102259732 102260117 -46523355 + L1MB7 LINE L1 5733 6106 -78 937 200 0 0 chr11 102260152 102260307 -46523165 - AluJb SINE Alu -24 288 134 1747 180 0 10 chr11 102260307 102260607 -46522865 - AluJb SINE Alu -15 297 1 313 167 45 0 chr11 102260610 102260676 -46522796 + L1MB7 LINE L1 6116 6184 0 542 294 166 16 chr11 102260686 102261101 -46522371 - L2 LINE L2 -179 3134 2657 343 250 24 32 chr11 102261525 102261649 -46521823 - MIR SINE MIR 0 262 140 17908 126 30 16 chr11 102261803 102264498 -46518974 + Tigger4(Zombi) DNA MER2_type 1 2731 0 234 109 36 55 chr11 102264546 102264601 -46518871 - LTR16B LTR ERVL -188 276 223 2784 239 49 57 chr11 102264902 102265220 -46518252 + L1M4 LINE L1 4287 4606 -1540 704 110 100 0 chr11 102265220 102265320 -46518152 + HY1 scRNA scRNA 1 110 -2 2784 239 49 57 chr11 102265320 102266046 -46517426 + L1M4 LINE L1 4606 5323 -823 * 18278 42 5 1 chr11 102266015 102268411 -46515061 + L1PA6 LINE L1 3155 5562 -592 2710 58 9 0 chr11 102268511 102268840 -46514632 + L1PA6 LINE L1 5821 6152 -2 263 327 188 14 chr11 102269790 102270013 -46513459 + MIR SINE MIR 1 262 0 185 261 87 43 chr11 102270009 102270078 -46513394 - L2 LINE L2 -50 3263 3192 * 342 253 22 22 chr11 102270482 102270573 -46512899 - MLT1K LTR MaLR -347 241 151 219 254 0 36 chr11 102271848 102271903 -46511569 + polypurine Low_complexity Low_complexity 2 54 0 459 142 0 0 chr11 102271979 102272085 -46511387 + (GA)n Simple_repeat Simple_repeat 2 107 0 2744 170 22 0 chr11 102272832 102273279 -46510193 + LTR32 LTR ERVL 15 471 0 245 250 62 0 chr11 102273863 102273927 -46509545 + L2 LINE L2 3153 3220 -52 690 105 0 0 chr11 102273957 102274062 -46509410 + (GGAA)n Simple_repeat Simple_repeat 4 108 0 252 239 56 14 chr11 102275891 102275962 -46507510 - LTR33A LTR ERVL -328 195 122 514 308 109 5 chr11 102276615 102276836 -46506636 - MIR SINE MIR -13 249 6 1766 211 27 15 chr11 102277070 102277401 -46506071 - MER21B LTR ERV1 -528 335 1 345 220 20 60 chr11 102277428 102277528 -46505944 - L2 LINE L2 -105 3208 3113 984 274 74 32 chr11 102277540 102277919 -46505553 - LTR16C LTR ERVL 0 491 97 598 333 74 20 chr11 102278044 102278408 -46505064 - L2 LINE L2 -200 3113 2733 262 235 186 39 chr11 102278800 102278902 -46504570 - MIR SINE MIR -78 184 68 203 195 24 0 chr11 102279011 102279052 -46504420 + (CATA)n Simple_repeat Simple_repeat 3 44 0 216 214 31 92 chr11 102279141 102279239 -46504233 - L2 LINE L2 -1288 2026 1935 2355 91 10 0 chr11 102279607 102279905 -46503567 - AluSg SINE Alu -9 301 1 2723 144 33 13 chr11 102280370 102280822 -46502650 - MER65C LTR ERV1 0 461 1 637 233 13 20 chr11 102281973 102282123 -46501349 + MER5A DNA MER1_type 35 183 -6 227 282 42 0 chr11 102282554 102282625 -46500847 - MLT1I LTR MaLR -6 403 330 993 147 0 0 chr11 102282790 102282940 -46500532 - FRAM SINE Alu -3 173 24 278 226 35 55 chr11 102283011 102283154 -46500318 - MLT1J2 LTR MaLR -312 138 1 234 282 13 39 chr11 102283265 102283343 -46500129 + CT-rich Low_complexity Low_complexity 2 77 0 540 307 18 24 chr11 102283589 102283755 -46499717 - MER5A DNA MER1_type -8 181 17 387 291 50 113 chr11 102283910 102284230 -46499242 + L2 LINE L2 2971 3270 -2 1485 88 0 0 chr11 102284350 102284531 -46498941 + AluSc SINE Alu 1 181 -128 3173 106 0 11 chr11 102284631 102285102 -46498370 + HERVH LTR ERV1 2530 2995 -4718 885 142 20 0 chr11 102285087 102285235 -46498237 + HERVH LTR ERV1 3140 3290 -4423 * 29812 73 4 3 chr11 102285225 102289506 -46493966 + HERVH LTR ERV1 3492 7713 0 2073 115 60 104 chr11 102289506 102289975 -46493497 + LTR7 LTR ERV1 1 448 -2 2187 64 67 0 chr11 102290174 102290456 -46493016 - AluY SINE Alu -10 301 1 305 248 79 10 chr11 102290705 102290806 -46492666 - MIR SINE MIR -115 147 40 491 252 82 0 chr11 102290842 102291001 -46492471 + MIR SINE MIR 90 261 -1 195 184 0 0 chr11 102291070 102291108 -46492364 + A-rich Low_complexity Low_complexity 1 38 0 5107 28 3 11 chr11 102292396 102292969 -46490503 - SVA Other Other 0 1386 818 703 168 168 0 chr11 102293748 102293891 -46489581 - MER46B DNA MER2_type -194 42 1 289 182 18 0 chr11 102293844 102293899 -46489573 + MER46A DNA MER2_type 97 152 -84 * 377 246 16 63 chr11 102293899 102294025 -46489447 - MIR SINE MIR -96 166 47 310 206 27 55 chr11 102294320 102294393 -46489079 - L2 LINE L2 -54 3218 3148 865 325 149 63 chr11 102295114 102296225 -46487247 + L2 LINE L2 141 1347 -1967 252 0 0 0 chr11 102296340 102296368 -46487104 + (A)n Simple_repeat Simple_repeat 1 28 0 1503 197 7 17 chr11 102296381 102296676 -46486796 + AluJo SINE Alu 3 294 -18 474 308 87 44 chr11 102297178 102297499 -46485973 + HAL1 LINE L1 496 830 -1677 752 205 103 43 chr11 102297503 102297737 -46485735 + L1M4 LINE L1 4860 5107 -1039 836 88 15 88 chr11 102297806 102297943 -46485529 + Tigger5 DNA MER2_type 2197 2323 0 1543 311 75 37 chr11 102297944 102298936 -46484536 - L2 LINE L2 -116 3197 2161 495 88 135 188 chr11 102298936 102299128 -46484344 - MER33 DNA MER1_type -2 322 141 886 196 0 0 chr11 102299132 102299290 -46484182 - FRAM SINE Alu -18 158 1 347 168 271 9 chr11 102299291 102299398 -46484074 - MER33 DNA MER1_type -181 143 9 229 328 48 32 chr11 102299398 102299523 -46483949 - L2 LINE L2 -1535 1779 1653 832 211 88 123 chr11 102299638 102300045 -46483427 - MSTD LTR MaLR 0 396 4 22 0 0 0 chr11 102300514 102300536 -46482936 + AT_rich Low_complexity Low_complexity 1 22 0 244 275 50 33 chr11 102350654 102350774 -46432698 + L1ME4a LINE L1 4046 4167 -1979 1155 308 71 27 chr11 102350866 102351836 -46431636 + L1ME4a LINE L1 4315 5327 -819 449 294 15 25 chr11 102351850 102352054 -46431418 + L1ME4a LINE L1 5372 5573 -597 245 282 34 28 chr11 102352057 102352235 -46431237 + L1ME4a LINE L1 5610 5864 -300 1661 145 50 13 chr11 102352291 102352725 -46430747 - LTR45B LTR ERV1 0 783 3 1857 199 65 0 chr11 102353067 102353476 -46429996 + L1MC3 LINE L1 6256 6358 -1 237 294 161 11 chr11 102353452 102353632 -46429840 + L1ME4a LINE L1 5873 6079 -42 * 201 303 258 0 chr11 102353769 102353858 -46429614 - MER5A DNA MER1_type -35 154 43 799 179 132 32 chr11 102354482 102354672 -46428800 - MER3 DNA MER1_type 0 209 1 292 185 136 12 chr11 102354838 102354919 -46428553 + MER20 DNA MER1_type 1 91 -128 310 119 15 15 chr11 102354921 102354988 -46428484 + (TG)n Simple_repeat Simple_repeat 2 68 0 592 158 26 53 chr11 102355016 102355130 -46428342 + MER20 DNA MER1_type 109 219 0 232 349 60 40 chr11 102355304 102355453 -46428019 + L2 LINE L2 3090 3241 -31 1944 146 23 23 chr11 102357269 102357612 -46425860 + MER61A LTR ERV1 1 343 0 732 280 210 31 chr11 102357639 102357979 -46425493 + MLT1E LTR MaLR 1 279 -314 222 37 0 0 chr11 102357979 102358006 -46425466 + (CCA)n Simple_repeat Simple_repeat 2 28 0 732 280 210 31 chr11 102358006 102358155 -46425317 + MLT1E LTR MaLR 279 578 -15 2903 76 95 0 chr11 102358918 102359327 -46424145 + LTR7 LTR ERV1 1 448 -2 20534 86 21 25 chr11 102359329 102362326 -46421146 + HERVH LTR ERV1 1 2987 -4726 926 135 20 0 chr11 102362320 102362468 -46421004 + HERVH LTR ERV1 3140 3290 -4423 * 3411 112 6 6 chr11 102362458 102362960 -46420512 + HERVH LTR ERV1 3492 3993 -3720 4479 139 0 1 chr11 102362962 102363625 -46419847 + HERVH LTR ERV1 4488 5149 -2564 1430 111 23 9 chr11 102363626 102363843 -46419629 + HERVH LTR ERV1 5600 5819 -1894 2374 104 50 13 chr11 102363843 102364219 -46419253 + HERVH LTR ERV1 7324 7713 0 2961 68 95 0 chr11 102364219 102364628 -46418844 + LTR7 LTR ERV1 1 448 -2 515 218 7 23 chr11 102364630 102364763 -46418709 - MIR SINE MIR -67 141 24 541 335 71 40 chr11 102364763 102365442 -46418030 - L2 LINE L2 0 3272 2562 216 326 149 42 chr11 102366081 102366296 -46417176 + MIR SINE MIR 14 251 -11 2259 109 0 0 chr11 102366905 102367221 -46416251 + AluSx SINE Alu 1 316 0 439 97 72 267 chr11 102367322 102367517 -46415955 + MER51B LTR ERV1 1 157 -220 1710 160 43 10 chr11 102367519 102367819 -46415653 + MER51B LTR ERV1 68 377 0 1223 163 41 56 chr11 102367821 102368091 -46415381 + MER51B-int LTR ERV1 1 266 -7550 1153 241 63 82 chr11 102368116 102368691 -46414781 + MER51B-int LTR ERV1 220 809 -4378 499 301 20 17 chr11 102368803 102369109 -46414363 + MER51B-int LTR ERV1 683 1812 -3885 256 325 47 0 chr11 102369394 102369523 -46413949 + MER51B-int LTR ERV1 1743 2201 -5908 378 266 57 58 chr11 102369722 102370081 -46413391 + MER51A-int LTR ERV1 1466 1680 -4849 3180 306 61 54 chr11 102370798 102373885 -46409587 + MER51A-int LTR ERV1 2779 6268 -1086 1902 166 41 0 chr11 102374031 102374350 -46409122 + MER51A-int LTR ERV1 7484 7815 -1 495 172 49 28 chr11 102374352 102374485 -46408987 + MER51A LTR ERV1 1 138 -239 248 128 0 21 chr11 102374497 102374544 -46408928 + MER51B LTR ERV1 109 154 -223 1691 162 50 10 chr11 102374544 102374847 -46408625 + MER51B LTR ERV1 63 377 0 193 256 0 0 chr11 102377417 102377460 -46406012 + L2 LINE L2 2928 2970 -302 377 277 75 22 chr11 102377878 102378045 -46405427 - MIR SINE MIR -51 211 39 1974 242 113 43 chr11 102378363 102379124 -46404348 + L2 LINE L2 2002 2815 -499 266 224 201 22 chr11 102379146 102379280 -46404192 + L2 LINE L2 3143 3300 -13 240 228 127 0 chr11 102379985 102380064 -46403408 + MIR SINE MIR 118 206 -56 255 57 0 0 chr11 102380289 102380324 -46403148 + L1PB3 LINE L1 6115 6149 -5 21 36 0 0 chr11 102380337 102380365 -46403107 + AT_rich Low_complexity Low_complexity 1 28 0 1608 188 47 94 chr11 102380519 102381008 -46402464 + MLT1C LTR MaLR 2 467 0 35 54 0 0 chr11 102381333 102381389 -46402083 + AT_rich Low_complexity Low_complexity 1 56 0 641 257 17 39 chr11 102381479 102381658 -46401814 - MER5B DNA MER1_type 0 178 4 377 171 26 0 chr11 102381663 102381739 -46401733 - MIR3 SINE MIR -50 158 81 206 286 116 0 chr11 102381730 102381877 -46401595 + L2 LINE L2 2901 3064 -208 * 297 211 74 11 chr11 102382177 102382272 -46401200 - L1ME4a LINE L1 -6 6115 6015 197 200 60 0 chr11 102382413 102382463 -46401009 - MIR SINE MIR -60 202 150 386 262 58 0 chr11 102382659 102382762 -46400710 - MER91C DNA MER1_type 0 140 32 306 206 152 0 chr11 102383428 102383520 -46399952 - MIR SINE MIR -39 223 118 444 335 137 0 chr11 102384038 102384250 -46399222 + L2 LINE L2 2509 2749 -565 1094 208 39 0 chr11 102384256 102384463 -46399009 + MER58A DNA MER1_type 9 223 -1 1681 184 79 12 chr11 102384596 102384938 -46398534 + MLT1A1 LTR MaLR 1 365 0 208 274 60 34 chr11 102386125 102386242 -46397230 + MIR3 SINE MIR 66 185 -23 490 188 87 7 chr11 102386833 102386971 -46396501 - MIR3 SINE MIR -22 186 38 299 342 50 0 chr11 102387050 102387170 -46396302 - L2 LINE L2 -8 3264 3139 312 330 61 0 chr11 102387292 102387407 -46396065 + L2 LINE L2 3147 3268 -4 191 310 0 0 chr11 102387437 102387495 -46395977 + MIR SINE MIR 92 149 -113 319 241 57 0 chr11 102387564 102387705 -46395767 + (TA)n Simple_repeat Simple_repeat 2 150 0 2162 112 133 16 chr11 102387807 102388190 -46395282 + MSTA LTR MaLR 1 428 0 7990 168 137 21 chr11 102388726 102390299 -46393173 + MER52A LTR ERV1 1 1755 0 227 241 0 0 chr11 102390301 102390355 -46393117 + MIR SINE MIR 183 236 -26 307 271 93 8 chr11 102390754 102390872 -46392600 - MIR SINE MIR -62 146 19 299 295 51 59 chr11 102391887 102392074 -46391398 + MIR SINE MIR 30 214 -48 213 316 61 10 chr11 102392759 102392857 -46390615 - L2 LINE L2 -1 3271 3169 4682 150 40 3 chr11 102393777 102394532 -46388940 - LTR39 LTR ERV1 0 783 1 2343 104 0 3 chr11 102394800 102395108 -46388364 - AluSg SINE Alu -3 307 1 2528 64 0 0 chr11 102395845 102396142 -46387330 + AluY SINE Alu 1 297 -14 524 111 0 0 chr11 102397389 102397461 -46386011 - MLT1B LTR MaLR 0 390 319 554 246 0 0 chr11 102397472 102397590 -46385882 + L1M3a LINE L1 4 121 -5834 1989 231 51 53 chr11 102397625 102398132 -46385340 + L1M3a LINE L1 445 951 -5014 1945 166 13 0 chr11 102398132 102398434 -46385038 + AluJo SINE Alu 1 306 -6 1989 231 51 53 chr11 102398434 102398645 -46384827 + L1M3a LINE L1 951 1161 -4804 2389 84 0 3 chr11 102398645 102398941 -46384531 + AluY SINE Alu 1 295 -16 1989 231 51 53 chr11 102398941 102399143 -46384329 + L1M3a LINE L1 1161 1400 -4565 569 217 0 0 chr11 102399144 102399250 -46384222 + FLAM_C SINE Alu 2 107 -36 1772 275 39 11 chr11 102399296 102400081 -46383391 + L1MA7 LINE L1 1314 2207 -4175 985 97 0 0 chr11 102400085 102400209 -46383263 + AluSx SINE Alu 13 136 -177 2219 104 0 3 chr11 102400209 102400497 -46382975 + AluSg SINE Alu 1 287 -23 1270 144 0 0 chr11 102400533 102400761 -46382711 + AluSx SINE Alu 129 356 0 617 208 63 37 chr11 102400763 102401032 -46382440 + L1MA7 LINE L1 2201 2476 -3906 10824 181 33 17 chr11 102401137 102402937 -46380535 + L1MA7 LINE L1 2463 4233 -2294 2283 104 0 3 chr11 102402937 102403235 -46380237 + AluSp SINE Alu 1 297 -16 10824 181 33 17 chr11 102403235 102403843 -46379629 + L1MA7 LINE L1 4233 4830 -1697 190 56 56 0 chr11 102403843 102403879 -46379593 + (CAA)n Simple_repeat Simple_repeat 2 39 0 10824 181 33 17 chr11 102403879 102405479 -46377993 + L1MA7 LINE L1 4830 6527 0 1697 174 59 42 chr11 102405481 102405888 -46377584 - MLT1C LTR MaLR -53 414 1 585 283 209 26 chr11 102406670 102407091 -46376381 + L2 LINE L2 2812 3309 -4 206 318 95 40 chr11 102407126 102407252 -46376220 - MIR3 SINE MIR -70 138 6 445 296 7 13 chr11 102408396 102408548 -46374924 - MIR SINE MIR -66 196 46 429 286 23 17 chr11 102408655 102408830 -46374642 - MER5B DNA MER1_type 0 178 3 2422 66 0 25 chr11 102408892 102409211 -46374261 - AluY SINE Alu 0 311 1 775 247 0 0 chr11 102409787 102409945 -46373527 - MER5B DNA MER1_type -14 164 7 259 191 132 0 chr11 102410203 102410271 -46373201 - L2 LINE L2 -2 3311 3235 2484 74 0 0 chr11 102410429 102410726 -46372746 + AluY SINE Alu 1 297 -14 506 249 137 39 chr11 102410982 102411263 -46372209 - MER93a LTR ERV1 0 402 77 2083 175 43 21 chr11 102411263 102411686 -46371786 - Tigger2a DNA MER2_type -2 432 1 506 249 137 39 chr11 102411686 102411762 -46371710 - MER93a LTR ERV1 -325 77 10 279 241 108 62 chr11 102411915 102412019 -46371453 + L1M4 LINE L1 2184 2282 -3864 1225 229 13 0 chr11 102412019 102412255 -46371217 - MER8 DNA MER2_type 0 239 1 279 241 108 62 chr11 102412255 102412519 -46370953 + L1M4 LINE L1 2282 2569 -3577 473 256 110 66 chr11 102412645 102412962 -46370510 + L1M4 LINE L1 2880 3210 -2936 346 229 129 18 chr11 102412966 102413136 -46370336 - L1MC5 LINE L1 -26 7935 7747 22 0 0 0 chr11 102413293 102413315 -46370157 + AT_rich Low_complexity Low_complexity 1 22 0 486 226 221 60 chr11 102413382 102413581 -46369891 + MIR SINE MIR 5 235 -27 662 291 42 39 chr11 102413621 102414167 -46369305 + L1M4 LINE L1 3476 4023 -2123 25 0 0 0 chr11 102414167 102414192 -46369280 + AT_rich Low_complexity Low_complexity 1 25 0 2839 16 0 0 chr11 102414220 102414534 -46368938 + AluYb8 SINE Alu 1 314 -4 224 227 0 57 chr11 102415186 102415274 -46368198 + MIR3 SINE MIR 5 87 -121 290 333 30 54 chr11 102415600 102415768 -46367704 - MIR SINE MIR -50 212 49 338 254 8 82 chr11 102416639 102416761 -46366711 + MIR SINE MIR 100 212 -50 278 348 129 0 chr11 102417792 102417970 -46365502 + L2 LINE L2 2429 2629 -685 569 296 58 101 chr11 102418216 102418614 -46364858 + L2 LINE L2 2891 3271 -1 723 230 21 21 chr11 102419048 102419235 -46364237 + L1ME LINE L1 31 217 -5853 1506 248 68 76 chr11 102419280 102421065 -46362407 + L1ME LINE L1 513 2267 -3813 1271 98 6 12 chr11 102421065 102421238 -46362234 + AluSg/x SINE Alu 132 303 -7 291 91 0 0 chr11 102421383 102421427 -46362045 - THE1B LTR MaLR -320 44 1 21 0 0 0 chr11 102421742 102421763 -46361709 + AT_rich Low_complexity Low_complexity 1 21 0 322 231 111 60 chr11 102422011 102422128 -46361344 + L1ME2 LINE L1 840 962 -5108 513 331 73 56 chr11 102422139 102422578 -46360894 + HAL1b LINE L1 93 523 -1899 2332 92 0 16 chr11 102422578 102422881 -46360591 - AluY SINE Alu -13 298 1 513 331 73 56 chr11 102422881 102423002 -46360470 + HAL1b LINE L1 523 1733 -689 1104 214 23 3 chr11 102423131 102423435 -46360037 + L1ME2 LINE L1 2249 2558 -3522 1309 196 68 105 chr11 102423435 102423818 -46359654 + MLT1C LTR MaLR 1 364 -103 3372 128 12 45 chr11 102423818 102424394 -46359078 - MER41D LTR ERV1 0 557 1 1309 196 68 105 chr11 102424394 102424495 -46358977 + MLT1C LTR MaLR 364 467 0 1716 209 156 10 chr11 102424497 102425086 -46358386 + L1ME2 LINE L1 2556 3230 -2850 * 2091 256 52 27 chr11 102425081 102425410 -46358062 + L1ME2 LINE L1 3750 4069 -2011 2301 110 0 0 chr11 102425410 102425710 -46357762 + AluSc SINE Alu 2 301 -8 2091 256 52 27 chr11 102425710 102426259 -46357213 + L1ME2 LINE L1 4069 4650 -1430 1561 140 122 21 chr11 102426259 102426594 -46356878 - MSTA LTR MaLR 0 428 60 2995 229 65 29 chr11 102426612 102427131 -46356341 + L1ME2 LINE L1 4649 5148 -950 1864 193 0 0 chr11 102427131 102427427 -46356045 + AluJb SINE Alu 1 296 -16 2995 229 65 29 chr11 102427427 102428302 -46355170 + L1ME2 LINE L1 5148 6089 -9 341 248 48 0 chr11 102428462 102428567 -46354905 + L1MC4 LINE L1 7925 8034 -8 258 417 0 0 chr11 102428916 102429012 -46354460 - L2 LINE L2 -20 3252 3157 333 0 0 0 chr11 102430956 102430993 -46352479 + (TC)n Simple_repeat Simple_repeat 2 38 0 306 0 0 0 chr11 102430992 102431026 -46352446 + (TG)n Simple_repeat Simple_repeat 1 34 0 * 471 341 128 18 chr11 102431354 102431738 -46351734 + L2 LINE L2 2282 2707 -607 384 316 16 21 chr11 102431747 102431934 -46351538 + L2 LINE L2 2485 2670 -644 439 339 55 6 chr11 102432139 102432322 -46351150 + MIR SINE MIR 27 218 -44 274 152 0 0 chr11 102432811 102432857 -46350615 - L2 LINE L2 0 3313 3268 873 265 98 53 chr11 102432870 102433074 -46350398 + MLT1H1 LTR MaLR 23 216 -339 860 196 116 11 chr11 102433074 102433263 -46350209 + MER63A DNA MER1_type 2 210 0 873 265 98 53 chr11 102433263 102433568 -46349904 + MLT1H1 LTR MaLR 216 555 0 745 271 36 14 chr11 102434055 102434276 -46349196 + MIR SINE MIR 6 231 -31 3761 183 78 21 chr11 102435083 102435207 -46348265 - L1MD2 LINE L1 -83 6276 6160 201 39 0 0 chr11 102435207 102435233 -46348239 + (TG)n Simple_repeat Simple_repeat 1 26 0 3761 183 78 21 chr11 102435233 102436010 -46347462 - L1MD2 LINE L1 -199 6160 5324 1591 194 56 0 chr11 102436017 102436393 -46347079 + L1MD2 LINE L1 4918 5314 -832 6930 237 29 42 chr11 102436393 102439054 -46344418 - L1M LINE L1 -841 5305 2701 909 168 0 26 chr11 102439057 102439212 -46344260 - AluJo SINE Alu -161 151 1 2602 207 55 38 chr11 102439218 102440423 -46343049 - L1MDb LINE L1 -4501 2039 861 816 280 26 16 chr11 102440747 102441054 -46342418 - L1MDb LINE L1 -6197 343 34 271 199 93 37 chr11 102441622 102441783 -46341689 + L1P4 LINE L1 5317 5442 -732 23 0 0 0 chr11 102441790 102441813 -46341659 + AT_rich Low_complexity Low_complexity 1 23 0 326 292 76 52 chr11 102441948 102442472 -46341000 - L1MC4a LINE L1 -432 5689 5373 532 319 77 60 chr11 102442569 102443128 -46340344 - L1MC4a LINE L1 -883 5263 4677 460 229 0 88 chr11 102443128 102443298 -46340174 + L1PB4 LINE L1 6000 6154 -2 198 0 0 0 chr11 102443350 102443372 -46340100 + (TG)n Simple_repeat Simple_repeat 1 22 0 693 243 6 22 chr11 102443626 102443807 -46339665 - MER5B DNA MER1_type 0 178 1 1098 152 36 59 chr11 102444948 102445185 -46338287 + MER33 DNA MER1_type 29 259 -2326 1503 228 21 19 chr11 102445185 102445558 -46337914 + MLT1A2 LTR MaLR 1 374 0 1098 152 36 59 chr11 102445558 102445623 -46337849 + MER33 DNA MER1_type 259 324 0 661 307 42 8 chr11 102446199 102446440 -46337032 - MIR SINE MIR -12 250 2 227 327 124 40 chr11 102446542 102446766 -46336706 - MIR3 SINE MIR -11 197 7 281 331 96 32 chr11 102446906 102447157 -46336315 - L2 LINE L2 -2 3270 3004 557 273 103 0 chr11 102448175 102448340 -46335132 + L3 LINE CR1 1391 1572 -5 345 359 47 0 chr11 102448419 102448547 -46334925 + L2 LINE L2 3139 3272 0 324 333 119 68 chr11 102449225 102449561 -46333911 - L2 LINE L2 0 3272 2920 627 352 109 0 chr11 102449596 102449943 -46333529 - L2 LINE L2 -509 2805 2421 202 195 0 0 chr11 102450143 102450184 -46333288 - L2 LINE L2 0 3313 3273 366 294 111 8 chr11 102451396 102451522 -46331950 - MIR3 SINE MIR -68 140 2 268 265 143 5 chr11 102452224 102452413 -46331059 - L1ME4a LINE L1 -3 6118 5904 240 245 0 0 chr11 102452473 102452522 -46330950 + L2 LINE L2 3262 3310 -3 377 306 129 8 chr11 102452962 102453122 -46330350 + MIR SINE MIR 4 183 -79 183 268 24 0 chr11 102453173 102453214 -46330258 - L2 LINE L2 -14 3258 3217 276 160 20 0 chr11 102453583 102453633 -46329839 - L2 LINE L2 0 3313 3263 226 385 88 26 chr11 102453991 102454217 -46329255 + L2 LINE L2 2810 3049 -223 213 39 0 0 chr11 102454466 102454492 -46328980 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 181 157 0 137 chr11 102454728 102454779 -46328693 - MIR3 SINE MIR -5 203 160 382 333 113 44 chr11 102455381 102455585 -46327887 - MIR SINE MIR -12 250 33 352 296 156 11 chr11 102456788 102456974 -46326498 - MIR SINE MIR -29 233 21 23 0 0 0 chr11 102457817 102457840 -46325632 + AT_rich Low_complexity Low_complexity 1 23 0 32 57 0 0 chr11 102459642 102459695 -46323777 + AT_rich Low_complexity Low_complexity 1 53 0 2167 119 0 0 chr11 102460061 102460347 -46323125 - AluSx SINE Alu -26 286 1 223 358 9 0 chr11 102460351 102460460 -46323012 - MIR SINE MIR -6 256 147 278 308 0 0 chr11 102460666 102460744 -46322728 + L2 LINE L2 3191 3268 -4 435 268 147 5 chr11 102461215 102461413 -46322059 - MIR SINE MIR 0 262 37 723 311 73 3 chr11 102461557 102461872 -46321600 - L2 LINE L2 -1372 1942 1606 1547 286 109 16 chr11 102461939 102462056 -46321416 - L2 LINE L2 -2007 1307 1202 2199 125 0 0 chr11 102462056 102462352 -46321120 - AluSx SINE Alu -16 296 1 1547 286 109 16 chr11 102462352 102462929 -46320543 - L2 LINE L2 -2112 1202 548 593 263 19 6 chr11 102462930 102463086 -46320386 - L2 LINE L2 -2933 381 224 28 48 0 0 chr11 102464296 102464338 -46319134 + GC_rich Low_complexity Low_complexity 1 42 0 26 50 0 0 chr11 102464424 102464464 -46319008 + GC_rich Low_complexity Low_complexity 1 40 0 417 109 0 0 chr11 102464996 102465060 -46318412 + (TG)n Simple_repeat Simple_repeat 2 65 0 2263 143 14 11 chr11 102466474 102466838 -46316634 - MLT1A1 LTR MaLR 0 365 1 365 304 113 12 chr11 102466877 102467045 -46316427 + MIR3 SINE MIR 1 185 -23 2129 246 61 36 chr11 102467426 102467443 -46316029 - MER21B LTR ERV1 -30 833 818 2187 118 0 13 chr11 102467443 102467758 -46315714 - AluSx SINE Alu -1 311 1 2129 246 61 36 chr11 102467758 102468350 -46315122 - MER21B LTR ERV1 -45 818 209 310 243 0 0 chr11 102468605 102468679 -46314793 + MIR SINE MIR 188 261 -1 246 149 21 0 chr11 102468685 102468732 -46314740 - HsTC2 DNA Tc2 -1850 48 1 23 33 0 0 chr11 102468732 102468762 -46314710 + AT_rich Low_complexity Low_complexity 1 30 0 1418 58 11 153 chr11 102468860 102469121 -46314351 - L1PA6 LINE L1 -6 6148 5925 334 239 56 0 chr11 102469134 102469205 -46314267 - MER21B LTR ERV1 -691 172 98 497 197 0 0 chr11 102469260 102469336 -46314136 - MER21B LTR ERV1 -773 90 15 189 280 0 0 chr11 102469404 102469454 -46314018 + MIR SINE MIR 84 133 -129 24 53 0 0 chr11 102469537 102469575 -46313897 + AT_rich Low_complexity Low_complexity 1 38 0 527 184 20 144 chr11 102470431 102470632 -46312840 + MER5B DNA MER1_type 3 178 0 329 296 11 0 chr11 102470638 102470726 -46312746 + L2 LINE L2 3178 3266 -6 659 282 125 25 chr11 102471425 102471822 -46311650 - MLT1J2 LTR MaLR -4 413 15 565 255 103 25 chr11 102471903 102472244 -46311228 - MLT1J LTR MaLR -1 510 110 410 267 61 0 chr11 102472348 102472479 -46310993 + MIR SINE MIR 3 141 -121 645 292 139 9 chr11 102472486 102472702 -46310770 + LTR33 LTR ERVL 10 253 -268 3263 150 12 36 chr11 102472785 102473344 -46310128 - MLT2B3 LTR ERVL -8 546 1 825 206 56 0 chr11 102473344 102473503 -46309969 + LTR33 LTR ERVL 354 521 0 238 232 179 0 chr11 102473503 102473598 -46309874 + MIR SINE MIR 140 251 -11 486 293 55 6 chr11 102474684 102474848 -46308624 - MIR SINE MIR -65 197 26 28 0 0 0 chr11 102475014 102475042 -46308430 + AT_rich Low_complexity Low_complexity 1 28 0 326 78 0 20 chr11 102475568 102475619 -46307853 + (CA)n Simple_repeat Simple_repeat 1 50 0 274 294 22 0 chr11 102475947 102476039 -46307433 + CT-rich Low_complexity Low_complexity 2 95 0 269 330 11 0 chr11 102476983 102477077 -46306395 + MIR SINE MIR 158 252 -10 598 301 105 4 chr11 102477271 102477500 -46305972 - MIR SINE MIR 0 262 11 269 346 45 30 chr11 102477627 102477760 -46305712 - L2 LINE L2 -30 3242 3108 * 671 239 14 36 chr11 102477756 102477972 -46305500 + MIR SINE MIR 51 261 -1 671 109 83 119 chr11 102478542 102478735 -46304737 + MER53 DNA DNA 4 189 0 350 272 11 98 chr11 102479201 102479385 -46304087 - L3 LINE CR1 -103 1474 1307 718 201 48 52 chr11 102479385 102479406 -46304066 + MER112 DNA MER1_type 6 26 -234 4025 139 62 43 chr11 102479406 102480176 -46303296 - LTR1 LTR ERV1 0 785 1 718 201 48 52 chr11 102480176 102480403 -46303069 + MER112 DNA MER1_type 26 253 -7 379 377 112 15 chr11 102480428 102480696 -46302776 - L3 LINE CR1 -274 1303 1010 624 298 29 16 chr11 102481018 102481260 -46302212 - MIR SINE MIR 0 262 18 2107 125 0 0 chr11 102481588 102481869 -46301603 + AluSx SINE Alu 16 296 -16 387 267 37 37 chr11 102483380 102483515 -46299957 + MIR SINE MIR 20 154 -108 1133 156 16 0 chr11 102483702 102483888 -46299584 + MER5A DNA MER1_type 1 189 0 395 329 31 0 chr11 102484255 102484416 -46299056 + L2 LINE L2 2885 3050 -222 460 141 0 87 chr11 102484614 102484706 -46298766 - AluJo SINE Alu -18 294 211 888 155 0 68 chr11 102484706 102484867 -46298605 - AluJo SINE Alu -162 150 1 2332 112 0 0 chr11 102484970 102485282 -46298190 - AluSx SINE Alu 0 312 1 1148 135 82 29 chr11 102486116 102486324 -46297148 + MER20 DNA MER1_type 1 219 0 251 196 0 0 chr11 102486760 102486806 -46296666 + L2 LINE L2 3257 3302 -11 2542 121 75 29 chr11 102487262 102487676 -46295796 - Tigger2a DNA MER2_type -1 433 1 372 237 97 0 chr11 102488628 102488721 -46294751 - MIR SINE MIR -44 218 117 613 313 74 4 chr11 102490056 102490286 -46293186 - MIR SINE MIR 0 262 17 347 309 33 13 chr11 102490524 102490676 -46292796 + MIR3 SINE MIR 54 208 0 24 77 0 0 chr11 102492105 102492157 -46291315 + GC_rich Low_complexity Low_complexity 1 52 0 24 0 0 0 chr11 102492684 102492708 -46290764 + GC_rich Low_complexity Low_complexity 1 24 0 5433 191 26 18 chr11 102495816 102497172 -46286300 - L1MD2 LINE L1 -4 6355 4992 437 263 171 0 chr11 102497717 102497892 -46285580 + MIR SINE MIR 58 262 0 859 237 0 16 chr11 102498366 102498556 -46284916 - MER5A DNA MER1_type 0 189 3 196 324 73 0 chr11 102499071 102499139 -46284333 + L3 LINE CR1 1482 1554 -23 254 211 58 0 chr11 102499334 102499346 -46284126 + MER3 DNA MER1_type 36 50 -159 672 153 76 0 chr11 102499346 102499464 -46284008 - MER3 DNA MER1_type 0 209 83 189 322 47 57 chr11 102500052 102500263 -46283209 + L2 LINE L2 2466 2674 -640 203 200 22 0 chr11 102500264 102500309 -46283163 + CT-rich Low_complexity Low_complexity 2 47 0 223 226 81 0 chr11 102501702 102501764 -46281708 - L2 LINE L2 -5 3267 3201 188 239 99 14 chr11 102501831 102501902 -46281570 + L3b LINE CR1 1183 1259 -324 600 286 108 9 chr11 102502189 102502420 -46281052 + MIR SINE MIR 8 261 -1 1609 245 128 26 chr11 102502443 102502912 -46280560 - MLT1G LTR MaLR -63 527 11 677 270 36 10 chr11 102504443 102504639 -46278833 - MIR SINE MIR -6 256 56 299 226 78 88 chr11 102505271 102505346 -46278126 + Charlie1 DNA MER1_type 1 76 -1379 2500 78 3 0 chr11 102505346 102505654 -46277818 + AluSc SINE Alu 1 309 0 299 226 78 88 chr11 102505654 102505680 -46277792 + Charlie1 DNA MER1_type 76 101 -1354 5045 168 94 36 chr11 102505683 102506895 -46276577 + Charlie1 DNA MER1_type 1480 2761 0 704 286 87 17 chr11 102506897 102507128 -46276344 + MIR SINE MIR 11 257 -5 225 169 34 85 chr11 102507564 102507623 -46275849 + L2 LINE L2 3215 3270 -2 232 111 143 48 chr11 102508013 102508076 -46275396 - MIR SINE MIR -65 197 129 203 364 12 22 chr11 102508553 102508725 -46274747 - MER5B DNA MER1_type -6 183 1 213 39 0 0 chr11 102508759 102508785 -46274687 + (GAAAA)n Simple_repeat Simple_repeat 5 30 0 249 257 319 7 chr11 102509129 102509273 -46274199 + MIR SINE MIR 68 256 -6 21 0 0 0 chr11 102510045 102510066 -46273406 + AT_rich Low_complexity Low_complexity 1 21 0 336 331 46 85 chr11 102510710 102510991 -46272481 - L2 LINE L2 0 3272 3003 2388 33 4 0 chr11 102511221 102511494 -46271978 + AluY SINE Alu 33 306 -5 335 306 37 8 chr11 102511555 102511689 -46271783 - LTR67 LTR ERVL -2 555 418 219 283 0 0 chr11 102512018 102512071 -46271401 + MIR3 SINE MIR 145 197 -11 2398 97 0 0 chr11 102512913 102513224 -46270248 - AluSx SINE Alu 0 312 2 3369 57 7 2 chr11 102515842 102516246 -46267226 + L1PA5 LINE L1 5747 6152 -2 201 175 0 0 chr11 102516821 102516861 -46266611 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 710 263 12 0 chr11 102517138 102517298 -46266174 - MER5B DNA MER1_type -6 172 11 21 36 0 0 chr11 102517606 102517634 -46265838 + AT_rich Low_complexity Low_complexity 1 28 0 28 29 0 0 chr11 102519593 102519628 -46263844 + AT_rich Low_complexity Low_complexity 1 35 0 302 287 59 0 chr11 102519665 102519766 -46263706 + L2 LINE L2 3164 3270 -2 223 244 90 13 chr11 102519953 102520031 -46263441 - MIR SINE MIR -71 191 108 414 274 15 30 chr11 102520117 102520252 -46263220 - L2 LINE L2 -1 3312 3180 269 239 14 0 chr11 102520630 102520701 -46262771 + (TA)n Simple_repeat Simple_repeat 2 73 0 480 243 13 59 chr11 102520915 102521067 -46262405 - MIR3 SINE MIR 0 208 64 364 332 67 66 chr11 102521165 102521854 -46261618 - L2 LINE L2 0 3272 2586 * 505 297 57 9 chr11 102521839 102522051 -46261421 + MIR SINE MIR 14 235 -27 218 285 170 74 chr11 102522412 102522994 -46260478 - L2 LINE L2 -1150 2164 1527 204 40 0 0 chr11 102523569 102523594 -46259878 + (CAG)n Simple_repeat Simple_repeat 3 27 0 447 251 82 18 chr11 102524480 102524651 -46258821 - MIR3 SINE MIR -8 200 19 345 336 93 80 chr11 102524695 102525147 -46258325 - L2 LINE L2 0 3272 2815 1541 192 45 17 chr11 102528067 102528359 -46255113 - AluJb SINE Alu -2 300 1 587 269 63 27 chr11 102528638 102528861 -46254611 - MIR SINE MIR -10 252 22 249 218 192 0 chr11 102530699 102530777 -46252695 + MIR SINE MIR 50 143 -65 288 56 0 0 chr11 102530806 102530842 -46252630 + MADE1 DNA Mariner 1 36 -44 292 198 26 103 chr11 102530866 102530982 -46252490 - L1ME4a LINE L1 -18 6103 5997 428 170 52 105 chr11 102531263 102531416 -46252056 - L1ME4a LINE L1 -18 6103 5959 1167 85 61 27 chr11 102531739 102531856 -46251616 + MER4A LTR ERV1 1 113 -551 240 35 0 0 chr11 102531856 102531885 -46251587 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1167 85 61 27 chr11 102531885 102532012 -46251460 + MER4A LTR ERV1 113 324 -340 231 256 64 0 chr11 102532004 102532082 -46251390 + MER4C LTR ERV1 180 262 -203 * 1174 160 25 141 chr11 102532482 102532728 -46250744 - MER33 DNA MER1_type -2264 321 129 2498 99 0 0 chr11 102532728 102533040 -46250432 - AluSx SINE Alu 0 312 1 1174 160 25 141 chr11 102533040 102533156 -46250316 - MER33 DNA MER1_type -2456 129 1 8760 130 168 81 chr11 102533412 102534602 -46248870 - MER4A-int LTR ERV1 -4202 2396 1311 396 59 0 0 chr11 102534602 102534653 -46248819 + (CA)n Simple_repeat Simple_repeat 2 52 0 8760 130 168 81 chr11 102534653 102535003 -46248469 - MER4A-int LTR ERV1 -5287 1311 993 1918 123 0 11 chr11 102535003 102535280 -46248192 + AluSx SINE Alu 23 296 -16 8760 130 168 81 chr11 102535280 102535446 -46248026 - MER4A-int LTR ERV1 -5605 993 843 181 54 0 54 chr11 102535446 102535483 -46247989 + (CAA)n Simple_repeat Simple_repeat 2 36 0 8760 130 168 81 chr11 102535483 102535968 -46247504 - MER4A-int LTR ERV1 -5755 843 12 1167 130 56 63 chr11 102535980 102536384 -46247088 - MER4A LTR ERV1 0 610 117 240 35 0 0 chr11 102536384 102536413 -46247059 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1167 130 56 63 chr11 102536413 102536530 -46246942 - MER4A LTR ERV1 -493 117 1 269 327 18 85 chr11 102538484 102538649 -46244823 + L2 LINE L2 3103 3256 -16 188 324 59 15 chr11 102538675 102538743 -46244729 + L2 LINE L2 3194 3264 -8 18780 147 56 38 chr11 102538792 102538814 -46244658 + MER4A-int LTR ERV1 1280 1300 -5298 1632 231 102 24 chr11 102538814 102539356 -46244116 + LTR57-int LTR ERVL 992 1575 -3768 18780 147 56 38 chr11 102539356 102542960 -46240512 + MER4A-int LTR ERV1 1300 6580 -18 3814 105 9 68 chr11 102542960 102543597 -46239875 + MER4A LTR ERV1 1 600 0 231 269 159 95 chr11 102543794 102544121 -46239351 + L2 LINE L2 2338 2685 -629 3446 139 30 10 chr11 102544286 102544795 -46238677 - MER1A DNA MER1_type -6 523 5 285 293 42 92 chr11 102544811 102545146 -46238326 + L2 LINE L2 2951 3268 -45 323 283 67 25 chr11 102545672 102545792 -46237680 - L2 LINE L2 -16 3256 3132 1586 167 78 3 chr11 102545936 102546218 -46237254 + AluJb SINE Alu 1 303 -9 2129 80 4 22 chr11 102547490 102547764 -46235708 - AluSc SINE Alu -15 294 26 1029 167 167 0 chr11 102548011 102548191 -46235281 - MER6B DNA MER2_type 0 210 1 453 291 68 64 chr11 102549603 102549773 -46233699 - L3 LINE CR1 -45 1532 1364 1879 150 13 26 chr11 102549773 102550079 -46233393 + AluSx SINE Alu 1 302 -10 453 291 68 64 chr11 102550079 102550138 -46233334 - L3 LINE CR1 -213 1364 1299 2650 130 73 32 chr11 102550138 102550575 -46232897 - MSTB2 LTR MaLR -2 455 1 453 291 68 64 chr11 102550575 102550609 -46232863 - L3 LINE CR1 -278 1299 1267 311 339 185 22 chr11 102551626 102552160 -46231312 + L2 LINE L2 2037 2657 -657 265 293 116 76 chr11 102552252 102552477 -46230995 + L2 LINE L2 3027 3260 -12 2105 119 10 3 chr11 102552992 102553286 -46230186 - AluSx SINE Alu -11 301 6 200 234 0 21 chr11 102553387 102553434 -46230038 + MIR SINE MIR 20 65 -143 180 328 175 19 chr11 102557469 102557737 -46225735 - L2 LINE L2 -665 2649 2340 2492 47 0 17 chr11 102558076 102558373 -46225099 + AluY SINE Alu 1 292 -19 185 259 24 47 chr11 102560225 102560310 -46223162 + L2 LINE L2 3190 3272 0 236 191 0 21 chr11 102560499 102560546 -46222926 + CT-rich Low_complexity Low_complexity 3 48 0 472 209 7 124 chr11 102561937 102562090 -46221382 + L2 LINE L2 3137 3271 -1 1070 196 69 5 chr11 102562165 102562369 -46221103 - MER58A DNA MER1_type -5 219 3 714 260 41 37 chr11 102563058 102563300 -46220172 - MIR SINE MIR -10 252 10 206 275 43 0 chr11 102563375 102563444 -46220028 - MIR3 SINE MIR -35 173 102 198 0 0 0 chr11 102563864 102563886 -46219586 + (GAAA)n Simple_repeat Simple_repeat 1 22 0 441 198 0 0 chr11 102564422 102564513 -46218959 + (CATATA)n Simple_repeat Simple_repeat 6 96 0 208 217 33 0 chr11 102564542 102564602 -46218870 + (TA)n Simple_repeat Simple_repeat 2 63 0 480 293 0 27 chr11 102564746 102564896 -46218576 - L1ME LINE L1 -5921 149 4 2250 98 0 35 chr11 102564929 102565247 -46218225 + AluSx SINE Alu 1 307 -5 25 31 0 0 chr11 102565766 102565798 -46217674 + AT_rich Low_complexity Low_complexity 1 32 0 206 128 26 0 chr11 102568087 102568126 -46215346 + CT-rich Low_complexity Low_complexity 2 41 0 2047 182 18 15 chr11 102568200 102568595 -46214877 - MSTD LTR MaLR 0 396 1 266 218 261 21 chr11 102569147 102569289 -46214183 + MIR SINE MIR 87 262 0 411 327 100 9 chr11 102569292 102569512 -46213960 - MIR SINE MIR -13 249 10 440 246 32 8 chr11 102570177 102570303 -46213169 - MIR SINE MIR -91 171 43 287 226 57 47 chr11 102570536 102570642 -46212830 + MIR SINE MIR 66 172 -90 479 331 22 11 chr11 102571301 102571482 -46211990 - MIR SINE MIR -78 184 2 339 325 16 46 chr11 102572326 102572520 -46210952 + MIR3 SINE MIR 16 203 -5 231 304 128 0 chr11 102573372 102573498 -46209974 + MIR SINE MIR 20 157 -63 640 237 93 34 chr11 102575331 102575567 -46207905 + MIR SINE MIR 7 256 -6 387 216 60 119 chr11 102575689 102575823 -46207649 - L2 LINE L2 0 3313 3188 218 184 41 0 chr11 102576604 102576653 -46206819 + (CATA)n Simple_repeat Simple_repeat 2 52 0 265 258 22 0 chr11 102576796 102576885 -46206587 - L1ME4a LINE L1 -200 5921 5831 3195 94 44 2 chr11 102576911 102577367 -46206105 - L1PA8 LINE L1 -8 6164 5690 180 0 0 0 chr11 102579832 102579852 -46203620 + (TTG)n Simple_repeat Simple_repeat 2 21 0 465 113 28 0 chr11 102579944 102580015 -46203457 - Tigger4(Zombi) DNA MER2_type -1 2730 2658 266 324 83 21 chr11 102580811 102580956 -46202516 + MIR SINE MIR 15 168 -94 235 273 216 0 chr11 102581543 102581631 -46201841 + L2 LINE L2 3196 3302 -11 181 386 0 11 chr11 102581921 102582009 -46201463 + L3b LINE CR1 1441 1527 -56 335 305 39 8 chr11 102582996 102583124 -46200348 + MIR SINE MIR 20 151 -111 702 284 93 3 chr11 102583621 102583910 -46199562 + L1ME4a LINE L1 5528 5842 -279 377 296 20 33 chr11 102583960 102584112 -46199360 - MIR SINE MIR -76 186 37 184 328 60 37 chr11 102585283 102585417 -46198055 + MIR3 SINE MIR 6 142 -66 587 303 86 4 chr11 102586774 102587008 -46196464 + MIR SINE MIR 3 255 -7 2246 116 3 0 chr11 102587086 102587380 -46196092 + AluSq SINE Alu 1 295 -18 252 0 0 0 chr11 102588026 102588054 -46195418 + (TAA)n Simple_repeat Simple_repeat 2 29 0 185 133 0 0 chr11 102590042 102590072 -46193400 + MIR SINE MIR 117 146 -116 250 324 135 18 chr11 102591597 102591791 -46191681 + MIR SINE MIR 3 210 -52 365 226 83 0 chr11 102591812 102591896 -46191576 + MER5A DNA MER1_type 14 104 -85 206 118 0 0 chr11 102592720 102592754 -46190718 + (A)n Simple_repeat Simple_repeat 1 34 0 304 246 129 41 chr11 102597247 102597418 -46186054 - MIR SINE MIR 0 262 77 333 0 0 0 chr11 102597552 102597589 -46185883 + (CA)n Simple_repeat Simple_repeat 2 38 0 582 318 33 12 chr11 102599256 102599498 -46183974 - MARNA DNA Mariner -88 498 252 235 273 221 39 chr11 102601191 102601345 -46182127 - MIR SINE MIR -52 210 29 200 167 78 100 chr11 102602439 102602529 -46180943 - MIR SINE MIR -73 189 102 540 290 103 9 chr11 102603352 102603566 -46179906 - MIR SINE MIR 0 262 29 309 333 115 37 chr11 102603872 102604142 -46179330 + L2 LINE L2 2981 3271 -1 21 0 0 0 chr11 102604436 102604457 -46179015 + AT_rich Low_complexity Low_complexity 1 21 0 220 230 50 40 chr11 102605521 102605621 -46177851 - MIR SINE MIR -116 146 46 703 267 80 52 chr11 102607649 102608094 -46175378 - MLT1G1 LTR MaLR -66 529 1 375 319 47 24 chr11 102608104 102608273 -46175199 - MIR SINE MIR -29 233 61 353 297 9 9 chr11 102608550 102608661 -46174811 - MIR SINE MIR -6 256 146 613 269 71 21 chr11 102608794 102609032 -46174440 + MIR SINE MIR 13 262 0 1591 171 11 8 chr11 102609639 102609902 -46173570 + AluJo SINE Alu 10 273 -39 204 67 0 0 chr11 102609910 102609940 -46173532 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 2879 82 11 16 chr11 102610706 102611072 -46172400 - THE1B LTR MaLR 0 364 1 209 136 0 23 chr11 102611307 102611351 -46172121 + (TTTCC)n Simple_repeat Simple_repeat 2 44 0 15071 202 48 27 chr11 102611678 102613326 -46170146 - L1MA5 LINE L1 0 7362 5750 2201 87 10 17 chr11 102613326 102613624 -46169848 + AluY SINE Alu 1 296 -15 15071 202 48 27 chr11 102613624 102613768 -46169704 - L1MA5 LINE L1 -1612 5750 5610 1736 122 12 12 chr11 102613768 102614023 -46169449 - L1PA8A LINE L1 -3 6128 5874 15071 202 48 27 chr11 102614023 102616688 -46166784 - L1MA5 LINE L1 -1752 5610 3002 216 0 0 0 chr11 102616688 102616712 -46166760 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 15071 202 48 27 chr11 102616712 102618523 -46164949 - L1MA5 LINE L1 -4360 3002 7 1982 238 43 5 chr11 102619114 102619551 -46163921 - LTR40c LTR ERVL -5 460 7 707 247 40 44 chr11 102619773 102620000 -46163472 - MIR SINE MIR -34 228 3 438 311 124 6 chr11 102620293 102620389 -46163083 - MER91B DNA MER1_type 0 190 107 198 0 0 0 chr11 102620389 102620411 -46163061 + (TA)n Simple_repeat Simple_repeat 2 23 0 438 311 124 6 chr11 102620411 102620475 -46162997 - MER91B DNA MER1_type -83 107 11 198 331 25 1 chr11 102620485 102620575 -46162897 + MIR SINE MIR 38 128 -80 423 153 23 130 chr11 102621461 102621592 -46161880 + MIR SINE MIR 106 222 -40 1200 206 0 0 chr11 102621628 102621837 -46161635 - MER3 DNA MER1_type 0 209 1 228 35 0 0 chr11 102622015 102622044 -46161428 + (CA)n Simple_repeat Simple_repeat 2 30 0 479 279 26 102 chr11 102622238 102622503 -46160969 + L2 LINE L2 3028 3272 0 450 0 0 0 chr11 102622510 102622560 -46160912 + (TGGA)n Simple_repeat Simple_repeat 4 53 0 2082 190 49 8 chr11 102622791 102623232 -46160240 + L1MB8 LINE L1 5657 6112 -66 * 4669 196 20 19 chr11 102623230 102624262 -46159210 + L1MB7 LINE L1 3529 4561 -1585 4666 118 34 10 chr11 102624264 102624978 -46158494 - Tigger1 DNA MER2_type -12 2406 1676 5038 159 15 15 chr11 102625027 102626235 -46157237 - L1PA16 LINE L1 -113 6053 4850 * 6353 184 19 8 chr11 102626233 102627473 -46155999 + L1PA16 LINE L1 3580 4832 -1314 11002 117 18 39 chr11 102627474 102629212 -46154260 - Tigger1 DNA MER2_type -715 1703 1 3323 190 19 7 chr11 102629215 102629893 -46153579 + L1MB7 LINE L1 4563 5248 -898 4991 161 19 2 chr11 102629902 102630768 -46152704 + L1MB7 LINE L1 5305 6184 0 547 251 59 44 chr11 102631264 102631467 -46152005 - MIR SINE MIR -53 209 4 328 361 132 5 chr11 102631709 102631922 -46151550 + MIR SINE MIR 15 254 -8 2233 109 0 0 chr11 102631922 102632216 -46151256 - AluSx SINE Alu -18 294 1 254 87 0 0 chr11 102632495 102632541 -46150931 - LTR66 LTR ERVL -171 439 394 196 29 29 29 chr11 102632542 102632576 -46150896 + (TA)n Simple_repeat Simple_repeat 2 35 0 261 0 0 0 chr11 102632587 102632616 -46150856 + (CA)n Simple_repeat Simple_repeat 2 30 0 432 328 108 20 chr11 102632989 102633184 -46150288 - L2 LINE L2 -18 3254 3043 387 341 81 4 chr11 102633229 102633487 -46149985 - LTR16A LTR ERVL -3 447 170 1643 203 37 76 chr11 102634165 102634702 -46148770 - L1MC5 LINE L1 -110 7851 7336 2137 95 3 3 chr11 102635318 102635639 -46147833 + AluSx SINE Alu 1 321 0 5100 133 53 18 chr11 102635650 102636542 -46146930 - Tigger3b DNA MER2_type -308 923 1 195 305 17 0 chr11 102639722 102639781 -46143691 - L2 LINE L2 0 3313 3254 560 283 61 20 chr11 102640204 102640402 -46143070 - MIR SINE MIR -48 214 9 325 305 147 0 chr11 102640682 102640837 -46142635 - MIR SINE MIR -71 137 14 669 224 43 6 chr11 102641346 102641507 -46141965 + MIR SINE MIR 29 195 -67 1850 150 11 4 chr11 102641799 102642079 -46141393 - AluJo SINE Alu -30 282 1 518 250 109 0 chr11 102642155 102642311 -46141161 - MIR3 SINE MIR 0 208 36 3133 219 78 35 chr11 102642612 102643329 -46140143 - MER21B LTR ERV1 -12 851 95 892 144 24 0 chr11 102643329 102643454 -46140018 + FLAM_C SINE Alu 2 129 -4 3133 219 78 35 chr11 102643454 102643534 -46139938 - MER21B LTR ERV1 -768 95 20 417 263 0 21 chr11 102643555 102643650 -46139822 - MER21B LTR ERV1 -770 93 1 262 348 54 0 chr11 102643685 102643777 -46139695 - L2 LINE L2 -14 3258 3162 699 192 159 0 chr11 102643779 102643930 -46139542 + MER20 DNA MER1_type 3 177 -42 226 125 0 0 chr11 102644102 102644134 -46139338 + MER20 DNA MER1_type 181 212 -7 290 326 131 27 chr11 102644244 102644465 -46139007 - L2 LINE L2 -203 3069 2826 357 286 132 18 chr11 102644579 102644799 -46138673 - L2 LINE L2 -517 2797 2553 1151 188 115 0 chr11 102645364 102645796 -46137676 - MLT1D LTR MaLR -6 499 1 376 268 211 11 chr11 102646993 102647183 -46136289 - MIR SINE MIR -7 255 28 984 246 81 48 chr11 102647701 102648136 -46135336 - LTR16A1 LTR ERVL 0 457 9 1984 58 4 4 chr11 102648325 102648568 -46134904 + MER75B DNA T2_type 1 243 0 634 250 51 0 chr11 102648778 102648934 -46134538 + MLT2B1 LTR ERVL 261 424 -96 211 213 138 12 chr11 102648941 102649021 -46134451 + L2 LINE L2 3104 3193 -120 1428 226 134 29 chr11 102649023 102649112 -46134360 - MER92C LTR ERV1 -2 552 474 2052 118 84 34 chr11 102649112 102649469 -46134003 - THE1C LTR MaLR 0 375 1 1428 226 134 29 chr11 102649469 102649827 -46133645 - MER92C LTR ERV1 -80 474 9 365 261 50 82 chr11 102650193 102650397 -46133075 + MIR SINE MIR 31 230 -32 241 268 116 49 chr11 102650930 102651093 -46132379 - MIR SINE MIR -54 208 35 230 281 122 58 chr11 102651155 102651294 -46132178 + MIR SINE MIR 7 154 -54 273 320 90 0 chr11 102651414 102651514 -46131958 + MIR SINE MIR 151 259 -3 239 262 244 6 chr11 102652169 102652337 -46131135 - L2 LINE L2 0 3313 3106 235 164 164 33 chr11 102652702 102652763 -46130709 + L1MC4 LINE L1 7933 8001 -41 227 301 63 111 chr11 102653469 102653607 -46129865 - L2 LINE L2 -2130 1184 1041 2274 94 3 19 chr11 102653607 102653915 -46129557 + AluSx SINE Alu 1 303 -9 227 301 63 111 chr11 102653915 102653926 -46129546 - L2 LINE L2 -2273 1041 1031 822 186 8 0 chr11 102653926 102654050 -46129422 + FLAM_A SINE Alu 1 125 -8 227 301 63 111 chr11 102654050 102654341 -46129131 - L2 LINE L2 -2283 1031 764 384 22 0 0 chr11 102654465 102654510 -46128962 + (TG)n Simple_repeat Simple_repeat 2 46 0 187 292 108 15 chr11 102654563 102654628 -46128844 - MIR SINE MIR -173 89 19 228 226 19 19 chr11 102654990 102655043 -46128429 + L3b LINE CR1 1522 1574 -9 * 246 114 0 0 chr11 102655010 102655045 -46128427 + L3 LINE CR1 1536 1570 -7 202 191 0 64 chr11 102655011 102655058 -46128414 + MIR3 SINE MIR 164 207 -1 * 622 220 31 58 chr11 102655326 102655517 -46127955 + MER5A DNA MER1_type 4 189 0 528 302 64 38 chr11 102655517 102655750 -46127722 + MIR SINE MIR 9 247 -15 868 107 8 0 chr11 102655871 102655993 -46127479 + L1PA16 LINE L1 5708 5830 -336 2862 85 44 13 chr11 102655993 102656383 -46127089 + L1PA10 LINE L1 5762 6163 -5 2509 103 12 0 chr11 102656393 102656733 -46126739 + L1PA16 LINE L1 5814 6157 -9 468 101 130 0 chr11 102656957 102657026 -46126446 + MADE1 DNA Mariner 1 78 -2 530 263 0 45 chr11 102657358 102657491 -46125981 - MIR SINE MIR -62 146 20 284 256 23 12 chr11 102657580 102657666 -46125806 - L3b LINE CR1 -201 1382 1296 234 0 0 0 chr11 102657908 102657934 -46125538 + (T)n Simple_repeat Simple_repeat 1 26 0 2358 160 58 17 chr11 102659222 102659635 -46123837 + MSTB1 LTR MaLR 3 432 0 188 108 0 27 chr11 102660024 102660061 -46123411 + (CA)n Simple_repeat Simple_repeat 2 37 0 598 211 154 6 chr11 102660975 102661131 -46122341 - MER5A DNA MER1_type -5 184 6 206 364 86 32 chr11 102661493 102661680 -46121792 - L2 LINE L2 0 3272 3076 293 296 141 45 chr11 102661796 102661995 -46121477 - MIR SINE MIR -29 233 16 1180 237 171 68 chr11 102662589 102663121 -46120351 - MLT1G1 LTR MaLR -3 592 6 506 277 22 0 chr11 102663262 102663399 -46120073 + Charlie8 DNA MER1_type 114 253 -2164 196 154 39 0 chr11 102663868 102663920 -46119552 + (TA)n Simple_repeat Simple_repeat 1 54 0 1454 216 131 55 chr11 102664152 102664665 -46118807 + L2 LINE L2 1873 2424 -890 356 323 50 0 chr11 102665676 102665775 -46117697 + L2 LINE L2 3168 3271 -1 2178 120 3 7 chr11 102666112 102666421 -46117051 - AluSx SINE Alu 0 312 5 568 222 72 17 chr11 102666422 102666567 -46116905 - MIR SINE MIR -63 145 8 2293 136 40 0 chr11 102666606 102666930 -46116542 - MER1B DNA MER1_type 0 337 1 786 248 21 19 chr11 102667186 102667477 -46115995 + LTR16B LTR ERVL 109 464 0 1897 158 0 0 chr11 102667580 102667936 -46115536 + AluSx SINE Alu 1 356 0 238 122 143 0 chr11 102668550 102668599 -46114873 + MER34B LTR ERV1 446 501 -64 * 247 190 89 38 chr11 102668571 102668650 -46114822 + MER34 LTR ERV1 450 532 -10 31 0 0 0 chr11 102668667 102668698 -46114774 + AT_rich Low_complexity Low_complexity 1 31 0 1532 144 43 119 chr11 102669677 102670072 -46113400 - MLT1A1 LTR MaLR 0 365 1 200 35 35 0 chr11 102670074 102670103 -46113369 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 216 318 42 62 chr11 102670343 102670535 -46112937 - L2 LINE L2 -221 3051 2864 261 329 19 76 chr11 102670877 102671035 -46112437 - L3 LINE CR1 -283 1294 1146 1458 168 7 41 chr11 102671076 102671368 -46112104 + AluJo SINE Alu 1 282 -30 1002 184 0 0 chr11 102671408 102671566 -46111906 - FAM SINE Alu -17 158 1 256 254 0 48 chr11 102671647 102671710 -46111762 - L2 LINE L2 -31 3282 3223 380 269 167 48 chr11 102671761 102671947 -46111525 - MIR SINE MIR -6 256 49 232 289 0 0 chr11 102672011 102672056 -46111416 + L2 LINE L2 3205 3249 -23 228 214 0 0 chr11 102672138 102672194 -46111278 + CT-rich Low_complexity Low_complexity 2 57 0 228 263 18 0 chr11 102672824 102672881 -46110591 + GA-rich Low_complexity Low_complexity 2 59 0 310 278 60 33 chr11 102673009 102673160 -46110312 - L2 LINE L2 -943 2371 2217 2361 96 0 6 chr11 102673262 102673596 -46109876 - AluSp SINE Alu 0 332 1 1218 125 5 5 chr11 102674136 102674328 -46109144 + Tigger2 DNA MER2_type 957 1148 -1570 2195 114 7 0 chr11 102674328 102674626 -46108846 + AluSx SINE Alu 1 300 -12 1980 129 13 7 chr11 102674685 102674987 -46108485 + AluSq SINE Alu 1 304 -9 282 164 0 0 chr11 102675605 102675660 -46107812 + (TG)n Simple_repeat Simple_repeat 2 56 0 526 194 0 0 chr11 102676447 102676540 -46106932 - MER5B DNA MER1_type 0 178 86 16745 127 35 12 chr11 102676557 102678058 -46105414 - Tigger2 DNA MER2_type -40 2678 1090 2100 125 10 13 chr11 102678058 102678361 -46105111 - AluSx SINE Alu -10 302 1 16745 127 35 12 chr11 102678361 102679463 -46104009 - Tigger2 DNA MER2_type -1628 1090 15 485 218 11 0 chr11 102679465 102679552 -46103920 - MER5B DNA MER1_type -90 88 1 473 245 136 42 chr11 102679554 102679885 -46103587 + HAL1 LINE L1 1030 1391 -1116 749 279 50 22 chr11 102680045 102680174 -46103298 + HAL1 LINE L1 1469 1593 -914 237 65 0 0 chr11 102680174 102680205 -46103267 + (TG)n Simple_repeat Simple_repeat 1 31 0 749 279 50 22 chr11 102680205 102680397 -46103075 + HAL1 LINE L1 1593 1799 -708 1099 278 177 7 chr11 102680793 102681257 -46102215 + REP3 LTR ERV 2 544 -18 324 320 22 22 chr11 102681656 102681884 -46101588 - L1M4 LINE L1 -1577 4569 4342 1126 69 0 0 chr11 102682800 102682931 -46100541 - AluSg SINE Alu -179 131 1 1044 222 54 0 chr11 102683143 102683364 -46100108 - MER45C DNA AcHobo -695 258 26 421 286 126 6 chr11 102683495 102683677 -46099795 - MIR SINE MIR -58 204 1 442 264 57 26 chr11 102684478 102684671 -46098801 + MIR SINE MIR 2 200 -62 2193 106 10 22 chr11 102684703 102685015 -46098457 - AluSx SINE Alu -4 308 1 222 311 142 0 chr11 102685540 102685646 -46097826 + MIR SINE MIR 86 206 -56 1561 112 0 14 chr11 102685650 102685865 -46097607 - AluSq SINE Alu -5 308 97 233 234 187 19 chr11 102688380 102688487 -46094985 + L2 LINE L2 1955 2079 -1235 557 224 103 17 chr11 102688572 102688746 -46094726 + L2 LINE L2 2084 2272 -1042 1697 234 114 31 chr11 102689217 102689734 -46093738 + MER68 LTR ERV1 1 560 -2 441 54 0 0 chr11 102689974 102690030 -46093442 + (CA)n Simple_repeat Simple_repeat 2 57 0 23 54 0 0 chr11 102690364 102690401 -46093071 + AT_rich Low_complexity Low_complexity 1 37 0 2131 82 71 0 chr11 102690812 102691093 -46092379 - AluSg SINE Alu -9 301 1 256 280 13 0 chr11 102691321 102691396 -46092076 + MIR SINE MIR 160 235 -27 218 285 170 74 chr11 102691757 102692339 -46091133 - L2 LINE L2 -1150 2164 1527 204 40 0 0 chr11 102692915 102692940 -46090532 + (CAG)n Simple_repeat Simple_repeat 3 27 0 447 251 82 18 chr11 102693826 102693997 -46089475 - MIR3 SINE MIR -8 200 19 345 336 93 80 chr11 102694041 102694493 -46088979 - L2 LINE L2 0 3272 2815 1541 192 45 17 chr11 102697413 102697705 -46085767 - AluJb SINE Alu -2 300 1 587 269 63 27 chr11 102697984 102698207 -46085265 - MIR SINE MIR -10 252 22 249 218 192 0 chr11 102700045 102700123 -46083349 + MIR SINE MIR 50 143 -65 288 56 0 0 chr11 102700152 102700188 -46083284 - MADE1 DNA Mariner 0 80 45 292 198 26 103 chr11 102700212 102700328 -46083144 - L1ME4a LINE L1 -18 6103 5997 428 170 52 105 chr11 102700610 102700763 -46082709 - L1ME4a LINE L1 -18 6103 5959 1167 130 56 63 chr11 102701086 102701203 -46082269 + MER4A LTR ERV1 1 117 -493 240 35 0 0 chr11 102701203 102701232 -46082240 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1167 130 56 63 chr11 102701232 102701636 -46081836 + MER4A LTR ERV1 117 610 0 8673 129 169 82 chr11 102701648 102702133 -46081339 + MER4A-int LTR ERV1 12 454 -6144 181 54 0 54 chr11 102702133 102702170 -46081302 + (TTG)n Simple_repeat Simple_repeat 2 36 0 8673 129 169 82 chr11 102702170 102702336 -46081136 + MER4A-int LTR ERV1 454 604 -5994 1760 125 4 21 chr11 102702336 102702615 -46080857 - AluSx SINE Alu -16 296 23 8673 129 169 82 chr11 102702615 102702965 -46080507 + MER4A-int LTR ERV1 604 922 -5676 396 59 0 0 chr11 102702965 102703016 -46080456 + (TG)n Simple_repeat Simple_repeat 2 52 0 8673 129 169 82 chr11 102703016 102704207 -46079265 + MER4A-int LTR ERV1 922 2396 -4202 655 182 61 0 chr11 102704463 102704579 -46078893 + MER33 DNA MER1_type 1 127 -2458 2540 93 0 0 chr11 102704579 102704891 -46078581 + AluSx SINE Alu 1 312 0 655 182 61 0 chr11 102704891 102704906 -46078566 + MER33 DNA MER1_type 127 140 -184 23 54 0 0 chr11 102705150 102705187 -46078285 + AT_rich Low_complexity Low_complexity 1 37 0 2153 82 71 0 chr11 102705598 102705879 -46077593 - AluSg SINE Alu -9 301 1 23 54 0 0 chr11 102706152 102706189 -46077283 + AT_rich Low_complexity Low_complexity 1 37 0 864 249 56 0 chr11 102706650 102706847 -46076625 + MER58A DNA MER1_type 17 224 0 306 301 106 88 chr11 102707491 102708036 -46075436 + L2 LINE L2 2301 2855 -459 225 293 26 60 chr11 102708075 102708191 -46075281 - MIR SINE MIR -108 154 43 190 219 49 0 chr11 102709740 102709781 -46073691 + L2 LINE L2 3219 3261 -11 189 0 0 0 chr11 102710079 102710100 -46073372 + (CA)n Simple_repeat Simple_repeat 2 22 0 267 286 265 1 chr11 102710962 102711082 -46072390 + MIR SINE MIR 39 186 -62 365 298 83 0 chr11 102712876 102712997 -46070475 + L2 LINE L2 3182 3312 -1 1144 314 115 25 chr11 102713131 102713879 -46069593 + L2 LINE L2 2345 3173 -140 953 282 4 8 chr11 102713895 102714150 -46069322 + MIR SINE MIR 1 254 -8 267 54 0 0 chr11 102714151 102714188 -46069284 + (TTA)n Simple_repeat Simple_repeat 2 38 0 638 212 0 8 chr11 102714196 102714314 -46069158 + L2 LINE L2 3184 3300 -13 207 0 0 0 chr11 102714314 102714337 -46069135 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 601 362 62 30 chr11 102714677 102715207 -46068265 + L2 LINE L2 1157 1703 -1611 320 250 64 50 chr11 102715616 102715836 -46067636 + L1MC/D LINE L1 5297 5519 -2289 663 235 128 120 chr11 102715857 102716431 -46067041 + L2 LINE L2 2745 3313 0 180 125 0 0 chr11 102716435 102716467 -46067005 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 451 325 100 7 chr11 102717249 102717520 -46065952 + L1MC/D LINE L1 2246 2541 -3605 220 260 41 0 chr11 102717581 102717654 -46065818 + (TATATG)n Simple_repeat Simple_repeat 5 80 0 2275 117 0 0 chr11 102717775 102718083 -46065389 - AluSx SINE Alu -4 308 1 366 245 190 59 chr11 102718093 102718346 -46065126 - L1ME3A LINE L1 -202 5968 5683 670 224 118 9 chr11 102718361 102718578 -46064894 - L1ME3A LINE L1 -621 5543 5329 4081 263 77 25 chr11 102718872 102720834 -46062638 - L1ME3A LINE L1 -1410 4736 2674 22 0 0 0 chr11 102721087 102721109 -46062363 + AT_rich Low_complexity Low_complexity 1 22 0 551 295 97 48 chr11 102721258 102722606 -46060866 + L1MC/D LINE L1 4344 5763 -814 23 0 0 0 chr11 102722607 102722630 -46060842 + AT_rich Low_complexity Low_complexity 1 23 0 281 200 27 0 chr11 102722644 102722719 -46060753 + (TATG)n Simple_repeat Simple_repeat 2 78 0 1728 193 0 0 chr11 102722761 102723067 -46060405 + AluJb SINE Alu 1 306 -6 2142 96 0 33 chr11 102723122 102723424 -46060048 + AluSx SINE Alu 1 292 -20 4577 199 82 10 chr11 102723620 102724855 -46058617 + L1MB7 LINE L1 4087 5508 -676 1986 143 0 20 chr11 102724855 102725156 -46058316 + AluJb SINE Alu 1 295 -17 4577 199 82 10 chr11 102725156 102725886 -46057586 + L1MB7 LINE L1 5508 6184 0 609 218 105 23 chr11 102726142 102726399 -46057073 + HAL1 LINE L1 803 1080 -1427 663 258 119 35 chr11 102726415 102726811 -46056661 + HAL1 LINE L1 1141 1569 -938 906 361 55 11 chr11 102726876 102727327 -46056145 + LTR67 LTR ERVL 19 489 -68 1110 281 39 11 chr11 102727329 102727710 -46055762 + HAL1 LINE L1 1683 2074 -433 257 265 0 44 chr11 102727759 102727827 -46055645 - LTR67 LTR ERVL -74 483 419 2234 81 16 32 chr11 102728296 102728605 -46054867 - AluSq SINE Alu -9 304 1 2920 259 60 60 chr11 102729066 102730394 -46053078 + HAL1 LINE L1 11 1338 -1169 245 233 87 53 chr11 102730927 102731077 -46052395 + L1ME LINE L1 5315 5469 -2339 309 314 40 96 chr11 102731123 102731426 -46052046 + L1ME LINE L1 5555 5840 -281 31 88 0 0 chr11 102732422 102732502 -46050970 + AT_rich Low_complexity Low_complexity 1 80 0 191 314 58 47 chr11 102733603 102733689 -46049783 - L2 LINE L2 0 3313 3227 505 277 39 0 chr11 102733767 102733922 -46049550 + MIR SINE MIR 91 251 -11 419 288 92 7 chr11 102734303 102734456 -46049016 + L2 LINE L2 984 1149 -2165 1415 250 67 90 chr11 102734770 102734949 -46048523 - L1ME3A LINE L1 -28 6142 5960 313 68 0 23 chr11 102734949 102734993 -46048479 - U2 snRNA snRNA -145 43 1 1415 250 67 90 chr11 102734993 102735507 -46047965 - L1ME3A LINE L1 -210 5960 5423 186 43 0 0 chr11 102738092 102738115 -46045357 + (TG)n Simple_repeat Simple_repeat 2 24 0 2335 135 10 44 chr11 102738256 102738426 -46045046 - MSTA LTR MaLR 0 428 254 2436 58 0 3 chr11 102738426 102738721 -46044751 + AluY SINE Alu 1 294 -17 2335 135 10 44 chr11 102738721 102738935 -46044537 - MSTA LTR MaLR -174 254 57 1931 178 18 5 chr11 102738935 102739318 -46044154 + L1MA9 LINE L1 4705 5092 -1054 3045 117 11 2 chr11 102739343 102739707 -46043765 - L1PB1 LINE L1 -1 6150 5780 365 102 17 0 chr11 102739707 102739766 -46043706 + (TA)n Simple_repeat Simple_repeat 1 60 0 3045 117 11 2 chr11 102739766 102739864 -46043608 - L1PB1 LINE L1 -371 5780 5684 3419 197 23 35 chr11 102739864 102740299 -46043173 + L1MA9 LINE L1 5333 5757 -555 2052 133 0 0 chr11 102740299 102740593 -46042879 - AluSx SINE Alu -18 294 1 3419 197 23 35 chr11 102740593 102740937 -46042535 + L1MA9 LINE L1 5757 6103 -209 702 207 0 15 chr11 102740940 102741075 -46042397 + AluJo SINE Alu 2 134 -178 404 265 6 62 chr11 102741088 102741250 -46042222 + L1MA9 LINE L1 6121 6273 -39 480 192 23 54 chr11 102741292 102741422 -46042050 - MER57A LTR ERV1 0 403 278 364 190 89 0 chr11 102741541 102741620 -46041852 - LTR54 LTR ERV1 -424 86 1 1962 254 28 16 chr11 102741620 102742124 -46041348 - LTR23-int LTR ERV1 -393 7144 6635 783 254 30 14 chr11 102742181 102742452 -46041020 - LTR23-int LTR ERV1 -804 6205 3930 1541 208 129 37 chr11 102742458 102743137 -46040335 - LTR23-int LTR ERV1 -1727 3209 2463 773 272 55 35 chr11 102743118 102743520 -46039952 - LTR23-int LTR ERV1 -1697 3183 2790 * 1793 112 0 28 chr11 102743520 102743810 -46039662 - AluSx SINE Alu 0 321 39 773 272 55 35 chr11 102743810 102743872 -46039600 - LTR23-int LTR ERV1 -2090 2790 2342 198 0 0 0 chr11 102743880 102743902 -46039570 + (TTTCC)n Simple_repeat Simple_repeat 4 25 0 1229 154 195 0 chr11 102743903 102744149 -46039323 - AluJo SINE Alu -8 294 1 349 147 13 13 chr11 102744151 102744226 -46039246 - LTR23-int LTR ERV1 -3071 2052 1978 315 354 53 9 chr11 102744573 102744686 -46038786 + L2 LINE L2 3155 3272 0 290 236 0 11 chr11 102744988 102745077 -46038395 - MER57A-int LTR ERV1 -3291 1832 1745 374 258 0 11 chr11 102745080 102745173 -46038299 + MER34 LTR ERV1 1 92 -450 245 238 122 58 chr11 102745156 102745328 -46038144 + LTR29 LTR ERV1 109 291 -331 * 680 251 132 0 chr11 102745480 102745699 -46037773 - MER34C LTR ERV1 -177 408 161 494 180 0 30 chr11 102745741 102745841 -46037631 - MER57A-int LTR ERV1 -4535 401 305 246 61 0 0 chr11 102746227 102746260 -46037212 - L1 LINE L1 -908 5238 5206 6758 161 10 8 chr11 102746296 102747549 -46035923 - L1 LINE L1 -931 5215 3898 730 261 82 5 chr11 102747987 102748194 -46035278 - MER57A-int LTR ERV1 -7312 225 3 542 203 203 98 chr11 102748197 102748443 -46035029 - MER57A LTR ERV1 0 403 132 323 151 178 0 chr11 102748456 102748529 -46034943 - LTR54 LTR ERV1 -424 86 1 3307 160 33 16 chr11 102748529 102749167 -46034305 + L1MA8 LINE L1 5641 6289 -2 1352 230 13 21 chr11 102749176 102749554 -46033918 - L1MC3 LINE L1 -644 7141 6767 248 267 20 20 chr11 102749621 102749722 -46033750 + T-rich Low_complexity Low_complexity 2 102 0 516 315 132 31 chr11 102749806 102750352 -46033120 - L1 LINE L1 -3313 2833 2233 225 227 129 38 chr11 102751722 102751854 -46031618 + L1P LINE L1 2270 2413 -3733 2238 196 28 0 chr11 102751926 102752427 -46031045 - L1MB3 LINE L1 -3 6180 5666 26 50 0 0 chr11 102752564 102752604 -46030868 + AT_rich Low_complexity Low_complexity 1 40 0 1985 127 3 17 chr11 102753718 102754010 -46029462 - AluSx SINE Alu -24 288 1 918 134 8 0 chr11 102754010 102754144 -46029328 - AluSq/x SINE Alu -177 135 1 743 125 0 0 chr11 102754171 102754283 -46029189 - L1PA13 LINE L1 -11 6152 6041 343 233 0 19 chr11 102754285 102754392 -46029080 + L1MC4 LINE L1 2006 6983 -1339 321 322 0 0 chr11 102754326 102754416 -46029056 - L1MC4 LINE L1 -1339 6703 6614 * 267 217 0 0 chr11 102754416 102754476 -46028996 + (TATG)n Simple_repeat Simple_repeat 4 63 0 328 159 0 14 chr11 102754476 102754545 -46028927 + LTR66 LTR ERVL 394 461 -149 773 78 0 0 chr11 102754545 102754647 -46028825 - L1PA14 LINE L1 -156 6005 5904 570 297 105 41 chr11 102755021 102755411 -46028061 - L2 LINE L2 -339 2975 2561 2244 132 0 0 chr11 102755420 102755724 -46027748 + AluSx SINE Alu 1 304 -8 1712 107 44 67 chr11 102755872 102756170 -46027302 - AluSx SINE Alu -21 291 1 569 272 91 11 chr11 102756185 102756472 -46027000 - L1MC3 LINE L1 -692 7093 6784 227 308 0 17 chr11 102756524 102756641 -46026831 + T-rich Low_complexity Low_complexity 5 119 0 389 276 60 70 chr11 102756663 102756978 -46026494 - L1M4 LINE L1 -3251 2895 2584 268 221 47 12 chr11 102757167 102757253 -46026219 - L1M4 LINE L1 -3790 2356 2268 1298 158 123 71 chr11 102757933 102758357 -46025115 - LTR7 LTR ERV1 -2 448 3 2568 105 8 5 chr11 102758359 102758748 -46024724 - HERVH LTR ERV1 0 7713 7324 16508 125 29 10 chr11 102758748 102761379 -46022093 - HERVH LTR ERV1 -1894 5819 3140 5336 111 0 17 chr11 102761358 102762163 -46021309 - HERVH LTR ERV1 -4718 2995 2205 * 2482 180 13 11 chr11 102762166 102762621 -46020851 - HERVH LTR ERV1 -6457 1256 801 2524 138 12 2 chr11 102762732 102763132 -46020340 - HERVH LTR ERV1 -7298 415 12 1243 181 75 106 chr11 102763144 102763608 -46019864 - LTR7 LTR ERV1 0 450 1 201 342 0 0 chr11 102765403 102765479 -46017993 + (TTGGGG)n Simple_repeat Simple_repeat 4 79 0 1919 161 93 30 chr11 102767003 102767360 -46016112 + MSTA LTR MaLR 4 390 -38 2038 128 10 0 chr11 102767360 102767650 -46015822 - AluSq SINE Alu -20 293 1 1919 161 93 30 chr11 102767650 102767689 -46015783 + MSTA LTR MaLR 390 425 -3 508 259 86 10 chr11 102767850 102768047 -46015425 + MIR SINE MIR 24 235 -27 321 262 109 64 chr11 102768078 102768345 -46015127 + L1M4 LINE L1 2943 3221 -2925 305 327 68 8 chr11 102768564 102768812 -46014660 + L1M4 LINE L1 3688 3950 -2196 202 322 178 32 chr11 102770940 102771310 -46012162 - L2 LINE L2 -359 2955 2532 666 318 96 3 chr11 102771821 102772123 -46011349 + LTR16A LTR ERVL 120 449 -1 430 245 60 46 chr11 102772440 102772591 -46010881 + L1ME3 LINE L1 5513 5665 -497 535 234 25 51 chr11 102772669 102772863 -46010609 + L1ME2 LINE L1 5911 6094 -68 4288 223 14 1 chr11 102772930 102773927 -46009545 + L1 LINE L1 2629 3638 -2508 372 231 0 13 chr11 102773927 102774005 -46009467 + MER2 DNA MER2_type 269 345 0 355 247 155 6 chr11 102774031 102774205 -46009267 + L1ME3 LINE L1 5655 5854 -308 1051 190 23 94 chr11 102774301 102774653 -46008819 - L1MC3 LINE L1 -692 7093 6767 1776 89 16 83 chr11 102775080 102775394 -46008078 - AluSx SINE Alu -19 293 1 340 287 112 39 chr11 102775474 102775732 -46007740 - L1M4 LINE L1 -3603 2543 2267 1608 165 29 26 chr11 102777263 102777572 -46005900 - AluSx SINE Alu -1 311 2 309 236 27 18 chr11 102778566 102778676 -46004796 - L1M4 LINE L1 -2929 3217 3107 1570 168 7 4 chr11 102780842 102781116 -46002356 - L1MB3 LINE L1 -243 5940 5666 22 88 0 0 chr11 102781220 102781277 -46002195 + AT_rich Low_complexity Low_complexity 1 57 0 264 229 29 29 chr11 102782314 102782419 -46001053 + L1M4 LINE L1 2663 2767 -3379 260 356 95 30 chr11 102782780 102783149 -46000323 - L2 LINE L2 -277 2995 2583 1168 176 0 33 chr11 102783176 102783386 -46000086 + AluJb SINE Alu 85 287 -25 290 347 53 0 chr11 102783603 102783753 -45999719 + HAL1 LINE L1 361 518 -1989 884 298 41 9 chr11 102783949 102784268 -45999204 + LTR16A LTR ERVL 120 448 -2 405 295 36 24 chr11 102784296 102784462 -45999010 - ERVL LTR ERVL -693 5071 4904 1178 274 47 22 chr11 102784585 102785138 -45998334 + L1ME2 LINE L1 5513 6141 -23 384 230 0 11 chr11 102785296 102785383 -45998089 + MER2 DNA MER2_type 260 345 0 862 210 85 27 chr11 102785699 102785994 -45997478 - L1MC3 LINE L1 -692 7093 6782 21 36 0 0 chr11 102786300 102786328 -45997144 + AT_rich Low_complexity Low_complexity 1 28 0 235 288 52 33 chr11 102786526 102786679 -45996793 - L1M4 LINE L1 -3604 2542 2387 214 246 0 0 chr11 102789238 102789299 -45994173 + (TCG)n Simple_repeat Simple_repeat 1 61 0 1989 161 48 43 chr11 102790860 102791023 -45992449 + MSTA LTR MaLR 30 191 -237 2123 125 0 0 chr11 102791023 102791333 -45992139 + AluSx SINE Alu 1 310 0 1989 161 48 43 chr11 102791333 102791565 -45991907 + MSTA LTR MaLR 191 428 0 8678 199 16 15 chr11 102791567 102793209 -45990263 + MSTA-int LTR MaLR 3 1646 -5 2250 148 67 7 chr11 102793214 102793618 -45989854 + MSTA LTR MaLR 1 428 0 3779 131 22 5 chr11 102793743 102794332 -45989140 - LTR43 LTR ERV1 0 602 4 600 254 107 5 chr11 102794578 102794783 -45988689 + MIR SINE MIR 18 243 -19 501 301 24 4 chr11 102795288 102795534 -45987938 + L1ME2 LINE L1 3688 3938 -2208 195 349 149 22 chr11 102797816 102798091 -45985381 - L2 LINE L2 -492 2822 2513 1081 260 61 6 chr11 102798602 102798914 -45984558 + LTR16A LTR ERVL 120 448 -2 404 261 60 15 chr11 102799239 102799373 -45984099 + L1ME2 LINE L1 5513 5652 -512 1062 280 14 45 chr11 102799374 102799817 -45983655 + L1ME2 LINE L1 5713 6141 -23 633 261 30 10 chr11 102799855 102800054 -45983418 + HAL1 LINE L1 165 367 -2140 274 286 44 0 chr11 102801052 102801143 -45982329 - L1MC/D LINE L1 -2032 5776 5682 310 310 100 15 chr11 102801210 102801471 -45982001 - L1MC/D LINE L1 -606 5556 5274 4192 153 40 7 chr11 102801850 102802570 -45980902 + Tigger2 DNA MER2_type 1 744 -1974 1530 151 16 4 chr11 102802622 102802880 -45980592 + Tigger2 DNA MER2_type 2448 2708 -10 334 354 67 5 chr11 102803005 102803200 -45980272 + MIR SINE MIR 53 259 -3 360 286 96 6 chr11 102803234 102803478 -45979994 + L1ME3A LINE L1 5162 5421 -749 252 213 0 80 chr11 102803480 102803555 -45979917 - AluJ/FRAM SINE Alu -4 298 230 634 280 142 14 chr11 102803585 102803728 -45979744 + L1ME3A LINE L1 5465 5588 -582 812 210 180 33 chr11 102803728 102804028 -45979444 + MER2 DNA MER2_type 1 344 0 634 280 142 14 chr11 102804028 102804230 -45979242 + L1ME3A LINE L1 5588 5854 -316 1091 223 34 28 chr11 102804329 102804652 -45978820 - L1MC3 LINE L1 -694 7091 6767 212 155 0 17 chr11 102804735 102804793 -45978679 + T-rich Low_complexity Low_complexity 3 59 0 361 281 120 66 chr11 102805038 102805387 -45978085 - L1M4 LINE L1 -3526 2620 2253 21 0 0 0 chr11 102807744 102807765 -45975707 + AT_rich Low_complexity Low_complexity 1 21 0 2480 81 3 0 chr11 102808632 102808940 -45974532 + AluSp SINE Alu 1 309 -4 300 103 0 0 chr11 102809119 102809158 -45974314 - tRNA-Ile-ATT tRNA tRNA -38 39 1 680 282 45 48 chr11 102809166 102809542 -45973930 - L2 LINE L2 -604 2710 2336 1675 288 50 13 chr11 102809631 102810688 -45972784 - L1ME3 LINE L1 -265 5897 4793 258 191 0 16 chr11 102810675 102810738 -45972734 + L1MC4 LINE L1 6641 6702 -1340 * 211 187 55 11 chr11 102810739 102810830 -45972642 + (TA)n Simple_repeat Simple_repeat 1 95 0 23 0 0 0 chr11 102810835 102810858 -45972614 + AT_rich Low_complexity Low_complexity 1 23 0 209 123 62 0 chr11 102810859 102810924 -45972548 + (TA)n Simple_repeat Simple_repeat 2 70 0 188 61 61 0 chr11 102810923 102810956 -45972516 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 * 1538 185 0 0 chr11 102810956 102811194 -45972278 - AluJb SINE Alu -30 282 45 302 298 41 16 chr11 102811202 102811323 -45972149 - L1ME3 LINE L1 -1351 4795 4672 1061 331 33 43 chr11 102811328 102811908 -45971564 - ERVL LTR ERVL -1913 3851 3278 482 274 153 0 chr11 102811909 102812066 -45971406 - MER5A DNA MER1_type 0 189 9 853 148 14 114 chr11 102812124 102812334 -45971138 + MER5A DNA MER1_type 1 189 0 314 180 0 16 chr11 102812358 102812419 -45971053 + MER5B DNA MER1_type 80 139 -39 661 150 0 0 chr11 102812420 102812520 -45970952 + FRAM SINE Alu 1 99 -77 4417 139 35 13 chr11 102814278 102815027 -45968445 - L1MC1 LINE L1 0 6333 5569 180 412 0 10 chr11 102815181 102815283 -45968189 + MIR SINE MIR 36 136 -72 181 171 0 0 chr11 102815352 102815387 -45968085 + MIR SINE MIR 228 262 0 2128 120 3 7 chr11 102816182 102816483 -45966989 - AluSg SINE Alu -10 300 1 630 291 215 8 chr11 102816574 102816956 -45966516 - L2 LINE L2 0 3313 2853 193 349 57 19 chr11 102817145 102817251 -45966221 + L2 LINE L2 3182 3291 -22 180 111 0 0 chr11 102817971 102817998 -45965474 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 283 256 0 39 chr11 102817998 102818076 -45965396 - L2 LINE L2 0 3313 3239 1379 224 54 9 chr11 102818638 102818969 -45964503 + MLT1A1 LTR MaLR 20 365 0 191 294 59 0 chr11 102819121 102819172 -45964300 + MIR SINE MIR 53 106 -156 454 293 23 23 chr11 102819231 102819405 -45964067 + MIR SINE MIR 47 220 -42 236 250 28 0 chr11 102819514 102819586 -45963886 + (TTA)n Simple_repeat Simple_repeat 2 75 0 360 282 160 13 chr11 102819677 102819833 -45963639 + MER5A DNA MER1_type 11 189 0 486 191 131 83 chr11 102819841 102820009 -45963463 - MER5B DNA MER1_type 0 178 3 502 245 34 14 chr11 102820606 102820753 -45962719 - Charlie8 DNA MER1_type -2223 194 45 538 289 174 0 chr11 102822371 102822572 -45960900 - MIR SINE MIR -7 255 20 230 315 81 0 chr11 102822825 102822936 -45960536 + L2 LINE L2 3153 3272 0 707 124 103 0 chr11 102822993 102823138 -45960334 - L1MB2 LINE L1 -4 6167 6008 216 315 101 0 chr11 102823645 102823734 -45959738 + L2 LINE L2 3107 3204 -68 272 261 25 59 chr11 102823897 102824016 -45959456 + L2 LINE L2 3199 3313 0 1690 196 10 0 chr11 102824394 102824695 -45958777 + AluJo SINE Alu 1 304 -8 189 312 97 25 chr11 102824725 102824962 -45958510 - L2 LINE L2 -439 2875 2622 22 35 0 0 chr11 102825997 102826026 -45957446 + AT_rich Low_complexity Low_complexity 1 29 0 201 254 56 14 chr11 102826559 102826630 -45956842 + L2 LINE L2 2548 2621 -693 2297 93 3 7 chr11 102826639 102826940 -45956532 - AluSx SINE Alu -2 310 11 585 211 58 26 chr11 102827038 102827194 -45956278 - MER112 DNA MER1_type -6 254 94 273 299 133 69 chr11 102827214 102827659 -45955813 + L2 LINE L2 2778 3248 -24 33 0 0 0 chr11 102828297 102828330 -45955142 + GC_rich Low_complexity Low_complexity 1 33 0 25 31 0 0 chr11 102828709 102828741 -45954731 + GC_rich Low_complexity Low_complexity 1 32 0 231 280 33 29 chr11 102829200 102829312 -45954160 - MIR SINE MIR -62 146 54 182 284 62 0 chr11 102829861 102829942 -45953530 + MIR SINE MIR 49 134 -128 290 228 362 7 chr11 102830374 102830523 -45952949 + MIR SINE MIR 34 235 -27 185 337 36 0 chr11 102830638 102830721 -45952751 - L2 LINE L2 -241 3031 2946 300 316 43 92 chr11 102831740 102832177 -45951295 + L2 LINE L2 2804 3219 -53 199 389 70 5 chr11 102832256 102832441 -45951031 - L3 LINE CR1 -113 1464 1268 57 16 0 0 chr11 102832661 102832725 -45950747 + AT_rich Low_complexity Low_complexity 1 64 0 274 252 108 9 chr11 102832737 102832848 -45950624 - MIR SINE MIR -62 200 79 342 326 160 0 chr11 102833371 102833546 -45949926 + MIR SINE MIR 53 255 -7 267 31 0 0 chr11 102833586 102833618 -45949854 + (CA)n Simple_repeat Simple_repeat 1 32 0 536 219 167 24 chr11 102834248 102834458 -45949014 - MIR SINE MIR -6 256 17 234 0 0 0 chr11 102834837 102834863 -45948609 + (T)n Simple_repeat Simple_repeat 1 26 0 1562 252 100 27 chr11 102835330 102835493 -45947979 - L2 LINE L2 0 3313 3163 1847 156 31 3 chr11 102835493 102835781 -45947691 + AluJb SINE Alu 2 297 -15 1562 252 100 27 chr11 102835781 102836527 -45946945 - L2 LINE L2 -150 3163 2348 1674 170 29 38 chr11 102836528 102836552 -45946920 + L1MA10 LINE L1 5949 5972 -362 1269 158 63 9 chr11 102836552 102836773 -45946699 - MER46A DNA MER2_type -2 234 2 1674 170 29 38 chr11 102836773 102837090 -45946382 + L1MA10 LINE L1 5972 6287 -47 293 183 125 39 chr11 102837076 102837180 -45946292 + L1MA10 LINE L1 6213 6325 -9 * 590 246 56 47 chr11 102837268 102837483 -45945989 - MIR SINE MIR -15 247 31 201 276 53 65 chr11 102838925 102839095 -45944377 + L2 LINE L2 2727 2894 -420 1892 129 19 42 chr11 102839099 102839409 -45944063 - AluJb SINE Alu -9 303 1 198 0 0 0 chr11 102839479 102839501 -45943971 + (T)n Simple_repeat Simple_repeat 1 22 0 217 354 0 13 chr11 102839622 102839701 -45943771 + L2 LINE L2 3145 3222 -50 1297 199 5 0 chr11 102839705 102839921 -45943551 - MER58A DNA MER1_type -7 217 1 291 324 96 7 chr11 102840683 102840819 -45942653 - MIR3 SINE MIR -59 149 2 2292 101 0 0 chr11 102841004 102841291 -45942181 + AluSx SINE Alu 1 287 -25 207 0 0 0 chr11 102841294 102841317 -45942155 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 288 0 0 0 chr11 102841715 102841747 -45941725 + (TG)n Simple_repeat Simple_repeat 2 33 0 192 200 0 0 chr11 102841910 102841955 -45941517 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 479 280 95 15 chr11 102842242 102842442 -45941030 + MIR SINE MIR 9 224 -38 1783 157 17 7 chr11 102842780 102843080 -45940392 + AluJb SINE Alu 5 307 -5 357 195 13 13 chr11 102843735 102843812 -45939660 - LTR33 LTR ERVL -1 520 444 1471 182 88 12 chr11 102843812 102844022 -45939450 + MER2 DNA MER2_type 1 245 -100 2260 92 43 17 chr11 102844022 102844369 -45939103 - L1PA10 LINE L1 0 6168 5813 1471 182 88 12 chr11 102844369 102844477 -45938995 + MER2 DNA MER2_type 245 343 -2 539 212 215 111 chr11 102844477 102844845 -45938627 - LTR33 LTR ERVL -113 408 1 348 230 24 91 chr11 102845442 102845607 -45937865 + MER5A DNA MER1_type 36 189 0 230 188 0 21 chr11 102845723 102845771 -45937701 - MER5B DNA MER1_type -22 156 110 946 72 0 40 chr11 102845816 102845968 -45937504 + AluY SINE Alu 158 303 -8 350 113 99 0 chr11 102845968 102846039 -45937433 - MER5B DNA MER1_type -96 82 5 2327 62 0 26 chr11 102846276 102846580 -45936892 - AluSg SINE Alu -14 296 1 291 28 0 0 chr11 102847108 102847144 -45936328 + (CA)n Simple_repeat Simple_repeat 2 37 0 212 292 150 0 chr11 102847761 102847881 -45935591 - L3 LINE CR1 -18 1559 1422 184 242 65 16 chr11 102847996 102848058 -45935414 + MIR SINE MIR 128 192 -70 291 54 0 0 chr11 102849186 102849223 -45934249 + (TG)n Simple_repeat Simple_repeat 1 37 0 3666 112 44 0 chr11 102849911 102850413 -45933059 - MER1A DNA MER1_type -5 524 1 425 330 75 0 chr11 102850934 102851107 -45932365 + MIR SINE MIR 7 192 -70 352 324 9 0 chr11 102851528 102851633 -45931839 + MIR SINE MIR 5 110 -152 6584 99 10 32 chr11 102851633 102851646 -45931826 - L1MA2 LINE L1 0 7723 7711 478 64 0 39 chr11 102851646 102851724 -45931748 - L1MA1 LINE L1 -1 6301 6227 6584 99 10 32 chr11 102851724 102852721 -45930751 - L1MA2 LINE L1 -12 7711 6735 205 171 0 0 chr11 102852721 102852756 -45930716 + (ATTG)n Simple_repeat Simple_repeat 4 38 0 1112 149 122 0 chr11 102852756 102852937 -45930535 - AluJb SINE Alu -26 286 84 22786 156 27 13 chr11 102852937 102855740 -45927732 - L1MA2 LINE L1 -818 6747 3985 2154 123 3 0 chr11 102855740 102856032 -45927440 + AluSx SINE Alu 1 293 -19 22786 156 27 13 chr11 102856032 102859873 -45923599 - L1MA2 LINE L1 -3580 3985 12 258 215 38 151 chr11 102859887 102860073 -45923399 + MIR SINE MIR 98 262 0 1899 112 6 67 chr11 102860838 102861151 -45922321 - AluSx SINE Alu -18 294 1 363 23 0 0 chr11 102861201 102861245 -45922227 + (CA)n Simple_repeat Simple_repeat 2 45 0 2446 71 0 0 chr11 102861522 102861816 -45921656 + AluSx SINE Alu 1 294 -18 21 0 0 0 chr11 102861836 102861857 -45921615 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr11 102862201 102862223 -45921249 + (A)n Simple_repeat Simple_repeat 1 22 0 267 320 55 16 chr11 102862833 102862961 -45920511 + MIR SINE MIR 57 189 -73 204 326 0 21 chr11 102863580 102863675 -45919797 + CT-rich Low_complexity Low_complexity 16 108 0 198 0 0 0 chr11 102864056 102864078 -45919394 + (TTA)n Simple_repeat Simple_repeat 3 24 0 4911 37 0 0 chr11 102864078 102864646 -45918826 - L1PA4 LINE L1 -18 6137 5570 326 255 32 102 chr11 102865209 102865305 -45918167 - L1ME4a LINE L1 -217 5904 5830 1709 177 0 23 chr11 102865305 102865604 -45917868 - AluJb SINE Alu -20 292 1 326 255 32 102 chr11 102865604 102865723 -45917749 - L1ME4a LINE L1 -291 5830 5704 22 56 0 0 chr11 102865903 102865939 -45917533 + AT_rich Low_complexity Low_complexity 1 36 0 2250 119 0 0 chr11 102866383 102866677 -45916795 - AluSx SINE Alu -18 294 1 23 0 0 0 chr11 102869293 102869316 -45914156 + AT_rich Low_complexity Low_complexity 1 23 0 809 246 96 21 chr11 102872014 102872254 -45911218 + MIR SINE MIR 2 259 -3 305 202 34 76 chr11 102872725 102872844 -45910628 + MIR SINE MIR 78 191 -71 2669 43 0 0 chr11 102874140 102874441 -45909031 - AluY SINE Alu -10 301 1 935 195 23 77 chr11 102874723 102874944 -45908528 + MER63A DNA MER1_type 1 209 -1 3714 51 0 0 chr11 102875271 102875719 -45907753 - L1PA6 LINE L1 0 6154 5707 256 309 82 0 chr11 102876255 102876352 -45907120 - MLT1K LTR MaLR 0 588 484 283 307 39 31 chr11 102876527 102876654 -45906818 - MLT1K LTR MaLR -314 274 147 475 207 141 121 chr11 102876848 102877046 -45906426 + MER102a DNA MER1_type 129 330 0 209 261 65 43 chr11 102877086 102877178 -45906294 - MIR SINE MIR -112 150 57 212 273 130 0 chr11 102877221 102877298 -45906174 - MER91B DNA MER1_type -103 87 1 244 326 0 63 chr11 102877664 102877759 -45905713 - MER5B DNA MER1_type 0 178 90 2859 218 55 21 chr11 102877765 102878558 -45904914 + L1ME1 LINE L1 5343 6162 -4 513 219 8 8 chr11 102878566 102878685 -45904787 - MER5B DNA MER1_type -49 129 11 319 262 0 57 chr11 102879309 102879431 -45904041 + MIR SINE MIR 91 205 -57 408 234 48 16 chr11 102879695 102879819 -45903653 - MIR SINE MIR -107 155 28 188 299 60 0 chr11 102886025 102886092 -45897380 - L2 LINE L2 -54 3218 3148 257 295 13 13 chr11 102886524 102886602 -45896870 + L3 LINE CR1 1495 1572 -5 1427 260 124 19 chr11 102886809 102887347 -45896125 - MLT1G1 LTR MaLR 0 595 1 330 291 178 9 chr11 102887647 102887860 -45895612 - MIR SINE MIR -6 256 8 461 241 53 0 chr11 102887863 102887996 -45895476 - LTR16A LTR ERVL 0 450 311 1077 57 38 0 chr11 102888108 102888267 -45895205 + (TATG)n Simple_repeat Simple_repeat 4 168 0 351 0 0 0 chr11 102889118 102889157 -45894315 + (TG)n Simple_repeat Simple_repeat 1 39 0 486 229 153 38 chr11 102890684 102890972 -45892500 - L2 LINE L2 -472 2842 2522 2298 56 0 21 chr11 102890979 102891267 -45892205 + AluY SINE Alu 1 282 -29 994 131 0 7 chr11 102891284 102891429 -45892043 + AluSg/x SINE Alu 120 263 -49 689 245 154 23 chr11 102891443 102891786 -45891686 - L2 LINE L2 -798 2516 2129 231 220 17 0 chr11 102891898 102891957 -45891515 + MIR SINE MIR 124 183 -79 467 276 89 2 chr11 102892202 102892417 -45891055 - MIR SINE MIR -18 244 11 183 301 48 55 chr11 102892607 102892753 -45890719 + L2 LINE L2 2919 3063 -209 213 234 114 2 chr11 102892977 102893048 -45890424 - MIR SINE MIR -67 141 64 475 237 0 132 chr11 102893051 102893203 -45890269 + FLAM_A SINE Alu 1 132 -1 294 342 133 19 chr11 102893752 102894074 -45889398 + L3 LINE CR1 549 907 -670 632 91 177 97 chr11 102894449 102894624 -45888848 + MER53 DNA DNA 1 189 0 411 38 0 0 chr11 102894866 102894919 -45888553 + (CA)n Simple_repeat Simple_repeat 2 54 0 290 182 61 15 chr11 102896564 102896630 -45886842 - L2 LINE L2 -36 3236 3168 686 284 22 4 chr11 102896677 102896902 -45886570 + MIR SINE MIR 1 229 -33 244 264 96 39 chr11 102896948 102897156 -45886316 - L2 LINE L2 -183 3089 2870 340 284 79 8 chr11 102897277 102897327 -45886145 - MIR SINE MIR -111 151 106 2165 102 0 0 chr11 102897327 102897610 -45885862 + AluSx SINE Alu 2 284 -28 340 284 79 8 chr11 102897610 102897686 -45885786 - MIR SINE MIR -156 106 16 2261 99 10 0 chr11 102898449 102898741 -45884731 - AluSx SINE Alu -17 295 1 242 297 50 50 chr11 102898747 102898929 -45884543 + L2 LINE L2 3098 3279 -34 239 266 0 78 chr11 102898925 102899053 -45884419 + L2 LINE L2 2040 2157 -1157 * 424 305 88 60 chr11 102899055 102899521 -45883951 + L2 LINE L2 2259 2742 -572 441 0 0 0 chr11 102899521 102899570 -45883902 + (CA)n Simple_repeat Simple_repeat 2 50 0 424 305 88 60 chr11 102899570 102899615 -45883857 + L2 LINE L2 2742 2784 -530 2000 109 0 90 chr11 102899615 102899937 -45883535 + AluSx SINE Alu 1 293 -19 2641 30 0 3 chr11 102900967 102901266 -45882206 + AluY SINE Alu 3 300 -11 416 216 108 9 chr11 102901554 102901665 -45881807 + L1ME LINE L1 5517 5638 -483 268 267 44 44 chr11 102901952 102902087 -45881385 - MER5A DNA MER1_type -21 168 34 215 268 46 59 chr11 102901956 102902109 -45881363 + MER5A DNA MER1_type 37 187 -2 * 310 308 19 0 chr11 102902645 102902752 -45880720 + MER5B DNA MER1_type 1 109 -69 280 303 76 23 chr11 102902850 102902982 -45880490 + MIR SINE MIR 47 185 -77 919 123 23 0 chr11 102903234 102903364 -45880108 - FLAM_C SINE Alu 0 133 1 30 27 0 0 chr11 102912273 102912310 -45871162 + AT_rich Low_complexity Low_complexity 1 37 0 25 75 0 0 chr11 102912601 102912654 -45870818 + AT_rich Low_complexity Low_complexity 1 53 0 2066 105 0 20 chr11 102913166 102913461 -45870011 - AluSx SINE Alu -23 289 1 22 0 0 0 chr11 102913471 102913493 -45869979 + AT_rich Low_complexity Low_complexity 1 22 0 2045 109 0 7 chr11 102913757 102914032 -45869440 + AluSq SINE Alu 2 274 -39 977 254 85 31 chr11 102914426 102914780 -45868692 - L2 LINE L2 0 3313 2941 * 1866 246 93 8 chr11 102914757 102915293 -45868179 - L2 LINE L2 -1308 2006 1425 2030 88 0 4 chr11 102917834 102918095 -45865377 - AluSg SINE Alu -17 293 34 309 250 0 0 chr11 102918383 102918451 -45865021 + L1ME3A LINE L1 6078 6145 -25 195 326 0 0 chr11 102919202 102919245 -45864227 - L2 LINE L2 -20 3252 3210 186 208 0 0 chr11 102920608 102920656 -45862816 + (TA)n Simple_repeat Simple_repeat 2 49 0 492 288 156 6 chr11 102921149 102921309 -45862163 + MER5A DNA MER1_type 6 189 0 215 192 19 19 chr11 102921314 102921366 -45862106 + L2 LINE L2 2301 2352 -962 489 348 109 10 chr11 102921674 102921875 -45861597 + L2 LINE L2 3048 3268 -4 21 0 0 0 chr11 102922210 102922231 -45861241 + AT_rich Low_complexity Low_complexity 1 21 0 1044 113 0 0 chr11 102922232 102922374 -45861098 + AluSg/x SINE Alu 159 300 -12 21 57 0 0 chr11 102923525 102923560 -45859912 + AT_rich Low_complexity Low_complexity 1 35 0 239 262 24 36 chr11 102924453 102924537 -45858935 - MIR3 SINE MIR -3 205 123 201 133 0 0 chr11 102924835 102924865 -45858607 + (TC)n Simple_repeat Simple_repeat 1 30 0 551 15 15 0 chr11 102924867 102924935 -45858537 + (TG)n Simple_repeat Simple_repeat 2 70 0 240 35 0 0 chr11 102925005 102925034 -45858438 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1720 105 54 4 chr11 102925158 102925435 -45858037 + L1MA5A LINE L1 6007 6297 0 243 308 19 10 chr11 102925489 102925593 -45857879 + L1 LINE L1 2382 2486 -3660 342 250 37 28 chr11 102925907 102926015 -45857457 - L1ME LINE L1 -477 5644 5536 433 318 38 42 chr11 102926038 102926299 -45857173 + L2 LINE L2 1778 2037 -1277 30 69 0 0 chr11 102926929 102926987 -45856485 + AT_rich Low_complexity Low_complexity 1 58 0 310 349 170 36 chr11 102927194 102927524 -45855948 + L2 LINE L2 2833 3206 -66 181 286 0 0 chr11 102927817 102927859 -45855613 - MIR SINE MIR -12 250 209 501 332 57 16 chr11 102928035 102928228 -45855244 - MIR3 SINE MIR 0 208 8 365 323 90 8 chr11 102931137 102931270 -45852202 - MIR3 SINE MIR -63 145 2 22 56 0 0 chr11 102932090 102932126 -45851346 + AT_rich Low_complexity Low_complexity 1 36 0 21 89 0 0 chr11 102932822 102932878 -45850594 + AT_rich Low_complexity Low_complexity 1 56 0 373 204 87 19 chr11 102933100 102933203 -45850269 - L2 LINE L2 -7 3306 3197 460 176 0 0 chr11 102933540 102933614 -45849858 + AluJ/FRAM SINE Alu 215 288 -24 22 35 0 0 chr11 102933775 102933804 -45849668 + AT_rich Low_complexity Low_complexity 1 29 0 292 196 0 0 chr11 102934119 102934170 -45849302 - L2 LINE L2 -1 3312 3262 551 260 28 59 chr11 102934284 102934538 -45848934 - L1ME LINE L1 -342 5779 5534 832 199 65 25 chr11 102935283 102935484 -45847988 - MER3 DNA MER1_type 0 209 1 893 186 38 19 chr11 102935789 102935999 -45847473 - L1MB1 LINE L1 -2 6166 5953 1094 90 0 0 chr11 102936120 102936265 -45847207 - AluSp/q SINE Alu -4 309 165 230 339 87 29 chr11 102936602 102936844 -45846628 + L2 LINE L2 2310 2565 -749 24 0 0 0 chr11 102936982 102937006 -45846466 + AT_rich Low_complexity Low_complexity 1 24 0 935 229 5 0 chr11 102937337 102937525 -45845947 - MER3 DNA MER1_type -20 189 1 28 0 0 0 chr11 102938365 102938393 -45845079 + AT_rich Low_complexity Low_complexity 1 28 0 323 167 50 0 chr11 102942421 102942481 -45840991 - Charlie1 DNA MER1_type -1 2760 2698 352 241 89 59 chr11 102942715 102942952 -45840520 + L1MC5 LINE L1 7677 7920 -41 2031 147 16 25 chr11 102943143 102943511 -45839961 + MLT1A1 LTR MaLR 1 365 0 198 394 65 19 chr11 102943957 102944267 -45839205 - L2 LINE L2 -588 2726 2403 378 0 0 0 chr11 102945050 102945092 -45838380 + (CA)n Simple_repeat Simple_repeat 2 43 0 1927 120 54 0 chr11 102945487 102945763 -45837709 - AluSg SINE Alu -19 291 1 26 30 0 0 chr11 102946293 102946326 -45837146 + AT_rich Low_complexity Low_complexity 1 33 0 244 0 56 0 chr11 102946505 102946541 -45836931 + (TTTTG)n Simple_repeat Simple_repeat 5 42 0 822 120 0 0 chr11 102946541 102946658 -45836814 - AluJb SINE Alu -195 117 1 28 29 0 0 chr11 102946935 102946970 -45836502 + AT_rich Low_complexity Low_complexity 1 35 0 6499 47 39 17 chr11 102947216 102948419 -45835053 + L1PA7 LINE L1 4602 5833 -321 2361 103 0 0 chr11 102948419 102948729 -45834743 + AluSq SINE Alu 1 310 -3 6499 47 39 17 chr11 102948729 102949052 -45834420 + L1PA7 LINE L1 5833 6148 -6 1582 218 10 0 chr11 102949801 102950109 -45833363 + LTR53 LTR ERVL 209 519 0 2177 85 0 14 chr11 102950183 102950465 -45833007 + AluSg SINE Alu 14 291 -19 24 32 0 0 chr11 102950773 102950804 -45832668 + AT_rich Low_complexity Low_complexity 1 31 0 26 50 0 0 chr11 102951102 102951142 -45832330 + AT_rich Low_complexity Low_complexity 1 40 0 230 224 75 0 chr11 102951730 102951797 -45831675 - L1ME4a LINE L1 -84 6037 5966 260 276 172 9 chr11 102951841 102951957 -45831515 - L1ME4a LINE L1 -1919 5889 5755 24 32 0 0 chr11 102953292 102953323 -45830149 + AT_rich Low_complexity Low_complexity 1 31 0 717 187 50 39 chr11 102953839 102954021 -45829451 - MER5A DNA MER1_type -2 187 4 2613 36 3 0 chr11 102954500 102954808 -45828664 + AluYa5 SINE Alu 1 309 -2 2229 123 0 0 chr11 102955508 102955810 -45827662 + AluSg SINE Alu 1 302 -8 2204 107 0 3 chr11 102956053 102956352 -45827120 + AluSq SINE Alu 2 299 -14 292 180 66 0 chr11 102956903 102956964 -45826508 + MER58 DNA MER1_type 2355 2419 -1 2300 66 3 10 chr11 102957331 102957635 -45825837 - AluY SINE Alu -9 302 1 539 329 76 9 chr11 102959443 102959668 -45823804 + MIR SINE MIR 22 261 -1 2028 108 17 3 chr11 102959704 102959992 -45823480 + AluSx SINE Alu 1 292 -20 2174 178 118 6 chr11 102962478 102963028 -45820444 - Charlie1 DNA MER1_type -6 2755 2144 291 274 0 0 chr11 102963026 102963110 -45820362 + Charlie1 DNA MER1_type 1845 1928 -833 * 3288 219 51 6 chr11 102963210 102964000 -45819472 - Charlie1a DNA MER1_type -630 825 1 2185 95 0 55 chr11 102965859 102966186 -45817286 - AluSc SINE Alu 0 309 1 25 31 0 0 chr11 102967863 102967895 -45815577 + AT_rich Low_complexity Low_complexity 1 32 0 434 301 157 71 chr11 102969347 102970027 -45813445 + L1M2 LINE L1 541 1453 -5396 475 294 88 25 chr11 102972816 102973170 -45810302 - L1ME4a LINE L1 -188 5933 5558 241 339 97 8 chr11 102973397 102973521 -45809951 + L2 LINE L2 3138 3272 0 562 270 30 84 chr11 102974437 102974733 -45808739 + MER102a DNA MER1_type 49 328 -2 285 95 16 32 chr11 102974911 102974923 -45808549 + (TA)n Simple_repeat Simple_repeat 2 13 -50 2774 77 6 0 chr11 102974923 102975276 -45808196 + THE1A LTR MaLR 1 355 0 285 95 16 32 chr11 102975276 102975326 -45808146 + (TA)n Simple_repeat Simple_repeat 13 63 0 985 271 20 4 chr11 102975525 102975772 -45807700 + MIR SINE MIR 2 252 -10 590 261 22 17 chr11 102975817 102975997 -45807475 + MIR SINE MIR 81 261 -1 241 278 43 93 chr11 102976095 102976257 -45807215 + MIR3 SINE MIR 16 169 -39 1188 182 56 62 chr11 102976257 102976545 -45806927 - MER69 DNA AcHobo -5 2521 2234 2132 131 3 7 chr11 102976545 102976850 -45806622 - AluSx SINE Alu -8 304 1 1188 182 56 62 chr11 102976850 102976919 -45806553 - MER69 DNA AcHobo -292 2234 2166 * 1901 259 20 8 chr11 102976917 102977411 -45806061 - MER69 DNA AcHobo -726 500 1 180 0 0 0 chr11 102977710 102977730 -45805742 + (TA)n Simple_repeat Simple_repeat 1 20 0 346 270 107 119 chr11 102978800 102979052 -45804420 - L2 LINE L2 0 3272 3024 459 245 163 17 chr11 102979548 102979743 -45803729 - MIR SINE MIR -7 255 36 180 241 19 37 chr11 102980081 102980135 -45803337 - L2 LINE L2 -42 3230 3178 330 45 0 0 chr11 102981694 102981738 -45801734 + (TC)n Simple_repeat Simple_repeat 1 44 0 440 235 0 20 chr11 102982240 102982342 -45801130 + MIR SINE MIR 160 259 -3 427 259 0 26 chr11 102984628 102984744 -45798728 + L2 LINE L2 3191 3303 -10 26 0 0 0 chr11 102985117 102985143 -45798329 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr11 102985205 102985230 -45798242 + AT_rich Low_complexity Low_complexity 1 25 0 334 290 271 0 chr11 102985479 102985634 -45797838 - MIR SINE MIR -20 242 46 183 184 0 0 chr11 102987662 102987700 -45795772 + GA-rich Low_complexity Low_complexity 1 38 0 226 410 17 0 chr11 102988094 102988211 -45795261 - L2 LINE L2 -5 3267 3149 623 283 133 45 chr11 102988276 102988506 -45794966 - L3 LINE CR1 -669 908 639 2071 89 7 4 chr11 102988506 102988775 -45794697 + AluSx SINE Alu 31 300 -12 623 283 133 45 chr11 102988775 102988876 -45794596 - L3 LINE CR1 -938 639 548 185 343 29 14 chr11 102988884 102988954 -45794518 + L2 LINE L2 3025 3095 -177 207 303 11 101 chr11 102989028 102989117 -45794355 + L2 LINE L2 3182 3262 -10 2180 96 7 4 chr11 102989148 102989460 -45794012 - AluSc SINE Alu 0 313 1 328 271 54 132 chr11 102990081 102990339 -45793133 - MIR SINE MIR -9 253 16 255 152 22 0 chr11 102990364 102990410 -45793062 - MIR3 SINE MIR -7 201 155 1979 140 0 7 chr11 102990573 102990894 -45792578 - AluSx SINE Alu 0 312 4 186 373 27 18 chr11 102992243 102992353 -45791119 + MIR3 SINE MIR 8 118 -90 370 396 28 0 chr11 102992378 102992560 -45790912 + MIR SINE MIR 20 206 -56 1667 187 53 11 chr11 102995669 102996049 -45787423 + MLT1C LTR MaLR 72 467 0 254 304 33 11 chr11 102996093 102996185 -45787287 + MIR3 SINE MIR 83 176 -32 2159 94 16 26 chr11 102996583 102996891 -45786581 - AluY SINE Alu -6 305 1 233 369 0 78 chr11 102996958 102997011 -45786461 + L2 LINE L2 3143 3199 -73 1814 154 13 36 chr11 102997011 102997316 -45786156 - AluJb SINE Alu -14 298 1 1736 166 7 30 chr11 102997318 102997620 -45785852 - AluJb SINE Alu -17 295 1 233 369 0 78 chr11 102997620 102997704 -45785768 + L2 LINE L2 3200 3272 0 360 313 26 9 chr11 102998623 102998738 -45784734 - MIR SINE MIR -134 128 12 675 241 61 28 chr11 102998783 102998995 -45784477 - L2 LINE L2 0 3313 3095 416 282 54 13 chr11 102999006 102999155 -45784317 + MLT1E LTR MaLR 8 162 -431 237 260 10 42 chr11 102999800 102999896 -45783576 + L1ME LINE L1 5543 5635 -486 184 348 14 0 chr11 102999897 102999966 -45783506 + L2 LINE L2 3243 3312 -1 330 255 28 55 chr11 102999999 103000144 -45783328 + L1ME LINE L1 5678 5818 -303 2158 85 4 14 chr11 103000483 103000764 -45782708 - AluSg SINE Alu -19 291 14 1471 215 13 0 chr11 103000838 103001145 -45782327 - LTR53 LTR ERVL 0 519 209 3368 59 5 11 chr11 103001894 103002337 -45781135 - L1PA6 LINE L1 -8 6146 5707 225 254 0 0 chr11 103002873 103002928 -45780544 - MLT1K LTR MaLR 0 588 534 246 307 39 31 chr11 103003145 103003272 -45780200 - MLT1K LTR MaLR -314 274 147 407 207 141 121 chr11 103003466 103003664 -45779808 + MER102a DNA MER1_type 129 330 0 247 261 65 43 chr11 103003704 103003796 -45779676 - MIR SINE MIR -112 150 57 236 273 130 0 chr11 103003839 103003916 -45779556 - MER91B DNA MER1_type -103 87 1 272 326 0 63 chr11 103004282 103004377 -45779095 - MER5B DNA MER1_type 0 178 90 2572 212 58 24 chr11 103004383 103005176 -45778296 + L1ME1 LINE L1 5343 6162 -4 563 219 8 8 chr11 103005184 103005303 -45778169 - MER5B DNA MER1_type -49 129 11 368 254 0 57 chr11 103005925 103006047 -45777425 + MIR SINE MIR 91 205 -57 436 234 57 24 chr11 103006311 103006435 -45777037 - MIR SINE MIR -107 155 28 207 284 60 0 chr11 103012635 103012702 -45770770 - L2 LINE L2 -54 3218 3148 257 295 13 13 chr11 103013134 103013212 -45770260 + L3 LINE CR1 1495 1572 -5 1427 260 124 19 chr11 103013419 103013957 -45769515 - MLT1G1 LTR MaLR 0 595 1 330 291 178 9 chr11 103014257 103014470 -45769002 - MIR SINE MIR -6 256 8 461 241 53 0 chr11 103014473 103014606 -45768866 - LTR16A LTR ERVL 0 450 311 968 59 52 0 chr11 103014718 103014871 -45768601 + (TATG)n Simple_repeat Simple_repeat 4 164 0 351 0 0 0 chr11 103015722 103015761 -45767711 + (TG)n Simple_repeat Simple_repeat 1 39 0 486 229 153 38 chr11 103017286 103017574 -45765898 - L2 LINE L2 -472 2842 2522 2254 62 0 24 chr11 103017581 103017870 -45765602 + AluY SINE Alu 1 282 -29 994 131 0 7 chr11 103017887 103018032 -45765440 + AluSg/x SINE Alu 120 263 -49 688 241 161 24 chr11 103018046 103018387 -45765085 - L2 LINE L2 -798 2516 2129 231 220 17 0 chr11 103018499 103018558 -45764914 + MIR SINE MIR 124 183 -79 455 284 89 2 chr11 103018803 103019018 -45764454 - MIR SINE MIR -18 244 11 183 301 48 55 chr11 103019208 103019354 -45764118 + L2 LINE L2 2919 3063 -209 213 234 114 2 chr11 103019578 103019649 -45763823 - MIR SINE MIR -67 141 64 475 237 0 132 chr11 103019652 103019804 -45763668 + FLAM_A SINE Alu 1 132 -1 294 342 133 19 chr11 103020353 103020675 -45762797 + L3 LINE CR1 549 907 -670 632 91 177 97 chr11 103021050 103021225 -45762247 + MER53 DNA DNA 1 189 0 303 49 0 0 chr11 103021467 103021508 -45761964 + (CA)n Simple_repeat Simple_repeat 2 42 0 290 167 61 15 chr11 103023152 103023218 -45760254 - L2 LINE L2 -36 3277 3209 686 284 22 4 chr11 103023265 103023490 -45759982 + MIR SINE MIR 1 229 -33 244 264 96 39 chr11 103023536 103023744 -45759728 - L2 LINE L2 -183 3089 2870 340 284 79 8 chr11 103023865 103023915 -45759557 - MIR SINE MIR -111 151 106 2165 102 0 0 chr11 103023915 103024198 -45759274 + AluSx SINE Alu 2 284 -28 340 284 79 8 chr11 103024198 103024274 -45759198 - MIR SINE MIR -156 106 16 2288 102 7 0 chr11 103025038 103025331 -45758141 - AluSx SINE Alu -17 295 1 242 297 50 50 chr11 103025337 103025519 -45757953 + L2 LINE L2 3098 3279 -34 227 273 0 78 chr11 103025515 103025643 -45757829 + L2 LINE L2 2040 2157 -1157 * 424 305 88 60 chr11 103025645 103026111 -45757361 + L2 LINE L2 2259 2742 -572 477 0 0 0 chr11 103026111 103026164 -45757308 + (CA)n Simple_repeat Simple_repeat 2 54 0 424 305 88 60 chr11 103026164 103026209 -45757263 + L2 LINE L2 2742 2784 -530 2000 109 0 90 chr11 103026209 103026531 -45756941 + AluSx SINE Alu 1 293 -19 2560 34 3 3 chr11 103027560 103027857 -45755615 + AluY SINE Alu 3 299 -12 416 216 108 9 chr11 103028145 103028256 -45755216 + L1ME LINE L1 5517 5638 -483 268 267 44 44 chr11 103028543 103028678 -45754794 - MER5A DNA MER1_type -21 168 34 215 268 46 59 chr11 103028547 103028700 -45754772 + MER5A DNA MER1_type 37 187 -2 * 310 308 19 0 chr11 103029236 103029343 -45754129 + MER5B DNA MER1_type 1 109 -69 275 303 76 23 chr11 103029441 103029573 -45753899 + MIR SINE MIR 47 185 -77 898 131 23 0 chr11 103029825 103029955 -45753517 - FLAM_C SINE Alu 0 133 1 1402 118 11 0 chr11 103037067 103037254 -45746218 + AluSg SINE Alu 1 189 -121 1098 119 15 69 chr11 103037408 103037467 -45746005 - AluSx SINE Alu -121 191 130 2155 111 7 3 chr11 103037467 103037765 -45745707 - AluSx SINE Alu -13 299 1 1098 119 15 69 chr11 103037765 103037907 -45745565 - AluSx SINE Alu -182 130 1 327 25 0 0 chr11 103037956 103037996 -45745476 + (CA)n Simple_repeat Simple_repeat 2 41 0 2184 92 20 0 chr11 103038273 103038577 -45744895 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr11 103038951 103038973 -45744499 + AT_rich Low_complexity Low_complexity 1 22 0 267 320 55 16 chr11 103039578 103039706 -45743766 + MIR SINE MIR 57 189 -73 200 356 0 11 chr11 103040325 103040415 -45743057 + CT-rich Low_complexity Low_complexity 2 90 0 198 0 0 0 chr11 103040801 103040823 -45742649 + (TTA)n Simple_repeat Simple_repeat 3 24 0 3547 53 0 2 chr11 103040823 103041254 -45742218 - L1PA5 LINE L1 -18 6136 5707 256 309 82 0 chr11 103041790 103041887 -45741585 - MLT1K LTR MaLR 0 588 484 283 307 39 31 chr11 103042062 103042189 -45741283 - MLT1K LTR MaLR -314 274 147 451 206 144 124 chr11 103042386 103042580 -45740892 + MER102a DNA MER1_type 133 330 0 209 261 65 43 chr11 103042620 103042712 -45740760 - MIR SINE MIR -112 150 57 212 273 130 0 chr11 103042755 103042832 -45740640 - MER91B DNA MER1_type -103 87 1 244 326 0 63 chr11 103043198 103043293 -45740179 - MER5B DNA MER1_type 0 178 90 2617 222 55 26 chr11 103043299 103044096 -45739376 + L1ME1 LINE L1 5343 6162 -4 513 219 8 8 chr11 103044104 103044223 -45739249 - MER5B DNA MER1_type -49 129 11 319 262 0 57 chr11 103044847 103044969 -45738503 + MIR SINE MIR 91 205 -57 399 234 57 24 chr11 103045233 103045357 -45738115 - MIR SINE MIR -107 155 28 325 312 91 42 chr11 103047198 103047583 -45735889 - L2 LINE L2 -652 2662 2259 227 273 0 78 chr11 103047585 103047713 -45735759 - L2 LINE L2 -1157 2157 2040 * 242 297 50 50 chr11 103047709 103047891 -45735581 - L2 LINE L2 -34 3279 3098 2288 102 7 0 chr11 103047897 103048190 -45735282 + AluSx SINE Alu 1 295 -17 340 284 79 8 chr11 103048954 103049030 -45734442 + MIR SINE MIR 16 106 -156 2165 102 0 0 chr11 103049030 103049313 -45734159 - AluSx SINE Alu -28 284 2 340 284 79 8 chr11 103049313 103049363 -45734109 + MIR SINE MIR 106 151 -111 244 264 96 39 chr11 103049484 103049692 -45733780 + L2 LINE L2 2870 3089 -183 686 284 22 4 chr11 103049738 103049963 -45733509 - MIR SINE MIR -33 229 1 290 167 61 15 chr11 103050010 103050076 -45733396 + L2 LINE L2 3209 3277 -36 303 49 0 0 chr11 103051720 103051761 -45731711 + (TG)n Simple_repeat Simple_repeat 2 42 0 638 92 178 92 chr11 103052003 103052177 -45731295 - MER53 DNA DNA 0 189 1 294 342 133 19 chr11 103052552 103052874 -45730598 - L3 LINE CR1 -670 907 549 475 237 0 132 chr11 103053423 103053575 -45729897 - FLAM_A SINE Alu -1 132 1 213 234 114 2 chr11 103053578 103053649 -45729823 + MIR SINE MIR 64 141 -67 183 301 48 55 chr11 103053873 103054019 -45729453 - L2 LINE L2 -209 3063 2919 455 284 89 2 chr11 103054209 103054424 -45729048 + MIR SINE MIR 11 244 -18 231 220 17 0 chr11 103054669 103054728 -45728744 - MIR SINE MIR -79 183 124 689 245 154 23 chr11 103054840 103055183 -45728289 + L2 LINE L2 2129 2516 -798 994 145 0 0 chr11 103055197 103055342 -45728130 - AluY SINE Alu -49 262 118 1042 56 0 0 chr11 103055359 103055484 -45727988 - AluY SINE Alu -29 282 158 230 188 0 21 chr11 103055531 103055579 -45727893 + MER5B DNA MER1_type 110 156 -22 348 230 24 91 chr11 103055695 103055860 -45727612 - MER5A DNA MER1_type 0 189 36 539 212 215 111 chr11 103056457 103056825 -45726647 + LTR33 LTR ERVL 1 408 -113 1471 182 88 12 chr11 103056825 103056933 -45726539 - MER2 DNA MER2_type -2 343 245 2260 92 43 17 chr11 103056933 103057280 -45726192 + L1PA10 LINE L1 5813 6168 0 1471 182 88 12 chr11 103057280 103057490 -45725982 - MER2 DNA MER2_type -100 245 1 357 195 13 13 chr11 103057490 103057567 -45725905 + LTR33 LTR ERVL 444 520 -1 1605 162 13 20 chr11 103058226 103058528 -45724944 - AluJb SINE Alu -8 304 5 479 280 95 15 chr11 103058866 103059066 -45724406 - MIR SINE MIR -38 224 9 192 200 0 0 chr11 103059353 103059398 -45724074 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 342 0 0 0 chr11 103059561 103059599 -45723873 + (CA)n Simple_repeat Simple_repeat 2 39 0 207 0 0 0 chr11 103059999 103060022 -45723450 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2292 101 0 0 chr11 103060025 103060312 -45723160 - AluSx SINE Alu -25 287 1 244 0 56 0 chr11 103060547 103060583 -45722889 + (TTTTG)n Simple_repeat Simple_repeat 5 42 0 845 120 0 0 chr11 103060583 103060700 -45722772 - AluJb SINE Alu -195 117 1 28 29 0 0 chr11 103060977 103061012 -45722460 + AT_rich Low_complexity Low_complexity 1 35 0 5861 63 23 2 chr11 103061258 103062458 -45721014 + L1P3 LINE L1 4602 5824 -330 2376 103 0 0 chr11 103062461 103062762 -45720710 + AluSq SINE Alu 1 301 -12 418 235 121 8 chr11 103063029 103063161 -45720311 + L1ME LINE L1 5492 5638 -483 319 265 42 66 chr11 103063448 103063614 -45719858 - MER5A DNA MER1_type -21 168 7 310 288 16 40 chr11 103064142 103064267 -45719205 + MER5B DNA MER1_type 1 122 -56 317 303 76 23 chr11 103064345 103064477 -45718995 + MIR SINE MIR 47 185 -77 949 131 23 0 chr11 103064729 103064859 -45718613 - FLAM_C SINE Alu 0 133 1 187 273 36 0 chr11 103065281 103065336 -45718136 - MIR SINE MIR -131 131 75 501 229 0 19 chr11 103068430 103068535 -45714937 - AluJb SINE Alu -76 236 134 1747 180 0 10 chr11 103068535 103068835 -45714637 - AluJb SINE Alu -15 297 1 313 167 45 0 chr11 103068838 103068904 -45714568 + L1MB7 LINE L1 6116 6184 0 555 277 176 12 chr11 103068996 103069334 -45714138 - L2 LINE L2 -265 3048 2657 408 248 17 0 chr11 103069758 103069875 -45713597 - MIR SINE MIR 0 262 144 277 226 176 10 chr11 103070180 103070282 -45713190 - L2 LINE L2 -1 3271 3153 22 0 0 0 chr11 103071137 103071159 -45712313 + AT_rich Low_complexity Low_complexity 1 22 0 832 211 88 123 chr11 103071628 103072035 -45711437 + MSTD LTR MaLR 4 396 0 2629 97 55 5 chr11 103072090 103072470 -45711002 + MLT2A1 LTR ERVL 2 400 -44 268 190 51 0 chr11 103072542 103072621 -45710851 + (TA)n Simple_repeat Simple_repeat 2 84 0 236 172 86 0 chr11 103072776 103072834 -45710638 + L2 LINE L2 2709 2771 -543 351 241 97 68 chr11 103073173 103073380 -45710092 - MIR SINE MIR -1 261 49 225 0 0 0 chr11 103073994 103074019 -45709453 + (T)n Simple_repeat Simple_repeat 1 25 0 203 171 0 0 chr11 103074549 103074584 -45708888 + CT-rich Low_complexity Low_complexity 2 36 0 257 279 128 35 chr11 103075354 103075440 -45708032 + MIR SINE MIR 84 178 -30 590 213 125 44 chr11 103076563 103076723 -45706749 - MER69A DNA AcHobo -3 174 2 2279 197 49 7 chr11 103077050 103077497 -45705975 + MLT1C LTR MaLR 2 467 0 1977 103 46 25 chr11 103077773 103078077 -45705395 - AluSq SINE Alu 0 310 1 389 354 88 12 chr11 103078797 103079037 -45704435 + MIR SINE MIR 5 262 0 1061 209 29 68 chr11 103079547 103079858 -45703614 + L1MB7 LINE L1 5733 6031 -153 287 274 69 10 chr11 103079959 103080061 -45703411 + LTR67 LTR ERVL 427 534 -23 312 304 65 27 chr11 103080093 103080227 -45703245 - L2 LINE L2 -686 2628 2484 2455 145 2 42 chr11 103080227 103080633 -45702839 - MLT1B LTR MaLR 0 390 1 312 304 65 27 chr11 103080633 103080682 -45702790 - L2 LINE L2 -830 2484 2438 2186 125 0 0 chr11 103081553 103081849 -45701623 - AluSx SINE Alu -16 296 1 184 222 111 0 chr11 103083203 103083257 -45700215 - L3 LINE CR1 -1090 487 428 615 14 0 0 chr11 103083556 103083628 -45699844 + (CA)n Simple_repeat Simple_repeat 2 73 0 324 289 62 21 chr11 103084279 103084376 -45699096 + L2 LINE L2 3171 3271 -1 214 171 0 24 chr11 103086054 103086095 -45697377 + (CA)n Simple_repeat Simple_repeat 2 41 0 1364 138 18 64 chr11 103086110 103086392 -45697080 - L1MA10 LINE L1 -1 6333 6065 689 78 0 0 chr11 103086400 103086490 -45696982 - L1MA10 LINE L1 -536 5798 5709 287 281 110 0 chr11 103086573 103086655 -45696817 + L2 LINE L2 3181 3271 -1 681 299 38 53 chr11 103086836 103087177 -45696295 + L2 LINE L2 2971 3306 -7 480 324 62 43 chr11 103087996 103088252 -45695220 - MIR SINE MIR -1 261 1 252 259 47 59 chr11 103088295 103088380 -45695092 + MIR SINE MIR 31 114 -148 1691 164 0 21 chr11 103088607 103088888 -45694584 - AluJb SINE Alu -3 309 35 589 109 0 40 chr11 103088891 103088992 -45694480 + L1MA9 LINE L1 5984 6080 -232 262 298 48 35 chr11 103089081 103089198 -45694274 - MIR SINE MIR -87 121 2 1555 103 70 0 chr11 103090398 103090612 -45692860 - MER30 DNA MER1_type -1 229 1 329 220 132 76 chr11 103091934 103092147 -45691325 + MIR SINE MIR 8 234 -28 21 36 0 0 chr11 103092228 103092256 -45691216 + AT_rich Low_complexity Low_complexity 1 28 0 12655 185 26 16 chr11 103092263 103094570 -45688902 + L1 LINE L1 15 2346 -5219 13865 189 13 11 chr11 103094671 103097439 -45686033 + L1 LINE L1 3661 6432 -1133 335 346 44 7 chr11 103098205 103098341 -45685131 - L2 LINE L2 -17 3255 3115 185 290 69 48 chr11 103098706 103098851 -45684621 + L2 LINE L2 2829 2976 -296 637 204 61 77 chr11 103099117 103099298 -45684174 + MER5B DNA MER1_type 1 178 0 269 300 44 0 chr11 103099324 103099414 -45684058 + MIR SINE MIR 168 261 -1 249 245 0 0 chr11 103099449 103099502 -45683970 + L2 LINE L2 3261 3313 0 619 206 30 85 chr11 103099602 103099767 -45683705 + MER97a DNA MER1_type? 21 176 -718 21 0 0 0 chr11 103099916 103099937 -45683535 + AT_rich Low_complexity Low_complexity 1 21 0 224 330 176 30 chr11 103100317 103100714 -45682758 + L2 LINE L2 2818 3272 0 272 330 83 0 chr11 103100772 103100881 -45682591 + L2 LINE L2 3191 3308 -5 205 329 13 13 chr11 103101228 103101304 -45682168 + MER5A DNA MER1_type 114 189 0 883 224 69 26 chr11 103101306 103101538 -45681934 + MIR SINE MIR 13 254 -8 312 310 9 9 chr11 103101788 103101904 -45681568 + MIR3 SINE MIR 83 198 -10 307 228 18 114 chr11 103103765 103103879 -45679593 - MIR SINE MIR -112 150 48 635 308 18 0 chr11 103103969 103104138 -45679334 - MIR SINE MIR -71 191 20 779 178 129 0 chr11 103106219 103106382 -45677090 - MER20 DNA MER1_type -1 218 35 195 42 0 0 chr11 103107075 103107099 -45676373 + (TAA)n Simple_repeat Simple_repeat 3 26 0 403 252 59 0 chr11 103107100 103107219 -45676253 - MIR SINE MIR -8 254 129 678 184 14 41 chr11 103107220 103107367 -45676105 - L2 LINE L2 -5 3308 3166 1125 247 113 52 chr11 103108348 103108922 -45674550 - MLT1L LTR MaLR -6 609 1 393 335 159 4 chr11 103109529 103109768 -45673704 - L2 LINE L2 -4 3268 2993 26 30 0 0 chr11 103109847 103109880 -45673592 + AT_rich Low_complexity Low_complexity 1 33 0 680 263 109 41 chr11 103110351 103110689 -45672783 + MLT1L LTR MaLR 253 613 -2 2031 154 86 28 chr11 103111299 103111389 -45672083 - L1MB2 LINE L1 -39 6132 6049 2493 154 97 43 chr11 103111389 103111882 -45671590 + MLT2B1 LTR ERVL 1 520 0 2031 154 86 28 chr11 103111882 103112186 -45671286 - L1MB2 LINE L1 -122 6049 5715 2156 113 57 104 chr11 103112808 103113278 -45670194 + LTR7 LTR ERV1 1 448 -2 17732 94 19 33 chr11 103113280 103116317 -45667155 + HERVH LTR ERV1 1 2995 -4718 885 142 20 0 chr11 103116302 103116450 -45667022 + HERVH LTR ERV1 3140 3290 -4423 * 29825 73 4 3 chr11 103116440 103120722 -45662750 + HERVH LTR ERV1 3492 7713 0 2073 115 60 104 chr11 103120722 103121191 -45662281 + LTR7 LTR ERV1 1 448 -2 2198 60 67 0 chr11 103121390 103121672 -45661800 - AluY SINE Alu -10 301 1 305 248 79 10 chr11 103121921 103122022 -45661450 - MIR SINE MIR -115 147 40 491 252 82 0 chr11 103122058 103122217 -45661255 + MIR SINE MIR 90 261 -1 195 184 0 0 chr11 103122286 103122324 -45661148 + A-rich Low_complexity Low_complexity 1 38 0 6765 64 11 39 chr11 103123611 103124595 -45658877 - SVA Other Other 0 1386 430 495 45 36 54 chr11 103124606 103125532 -45657940 - SVA Other Other -592 794 693 852 37 0 0 chr11 103125532 103125640 -45657832 + (GGGAGA)n Simple_repeat Simple_repeat 1 108 0 2339 71 34 0 chr11 103125796 103126090 -45657382 - AluY SINE Alu -7 304 1 414 0 0 0 chr11 103126438 103126484 -45656988 + (CA)n Simple_repeat Simple_repeat 2 47 0 1006 274 0 4 chr11 103126582 103126819 -45656653 + MIR SINE MIR 5 240 -22 296 302 62 16 chr11 103127618 103127747 -45655725 + MIR SINE MIR 63 197 -65 353 299 114 22 chr11 103128547 103128731 -45654741 - MIR SINE MIR -10 252 52 996 178 8 108 chr11 103128802 103129061 -45654411 + AluJb SINE Alu 1 233 -79 351 157 0 6 chr11 103129079 103129140 -45654332 - AluJ/FRAM SINE Alu -20 282 231 215 311 189 9 chr11 103129193 103129299 -45654173 - L2 LINE L2 0 3272 3148 386 327 81 27 chr11 103129839 103130062 -45653410 + MIR SINE MIR 4 238 -24 1672 177 0 35 chr11 103130071 103130382 -45653090 + AluJb SINE Alu 1 300 -12 368 268 49 32 chr11 103130527 103130650 -45652822 + L2 LINE L2 3189 3313 0 329 242 198 25 chr11 103131699 103131856 -45651616 - MIR SINE MIR 0 262 79 2421 137 51 56 chr11 103132381 103132811 -45650661 + MSTA LTR MaLR 1 428 0 331 241 171 88 chr11 103133471 103133687 -45649785 + L2 LINE L2 2729 2962 -352 216 0 0 0 chr11 103133721 103133745 -45649727 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 508 183 29 10 chr11 103133785 103133889 -45649583 + L2 LINE L2 3208 3313 0 670 205 39 77 chr11 103134726 103134960 -45648512 - MER112 DNA MER1_type -6 254 30 299 354 116 31 chr11 103135225 103135674 -45647798 + L2 LINE L2 1862 2348 -966 443 408 81 13 chr11 103135703 103136012 -45647460 + L2 LINE L2 2934 3263 -9 2220 122 7 0 chr11 103137019 103137313 -45646159 - AluY SINE Alu -15 296 1 413 210 168 8 chr11 103137381 103137500 -45645972 - MIR SINE MIR -62 200 63 6549 60 0 0 chr11 103137692 103138458 -45645014 + L1PA5 LINE L1 5389 6154 0 2347 153 13 8 chr11 103138681 103139054 -45644418 + THE1C LTR MaLR 1 375 0 382 235 12 0 chr11 103139121 103139202 -45644270 + MER117 DNA MER1_type 64 145 -52 814 297 50 15 chr11 103139341 103139715 -45643757 - MLT1I LTR MaLR 0 409 23 531 280 27 7 chr11 103139724 103139874 -45643598 + L2 LINE L2 2584 2736 -578 390 316 71 13 chr11 103141020 103141175 -45642297 - MIR3 SINE MIR -12 196 33 1225 208 75 81 chr11 103142974 103143416 -45640056 - LTR16A1 LTR ERVL 0 457 19 519 255 25 71 chr11 103143507 103143703 -45639769 - L2 LINE L2 -2 3311 3125 21 0 0 0 chr11 103143829 103143850 -45639622 + AT_rich Low_complexity Low_complexity 1 21 0 190 322 157 0 chr11 103144045 103144160 -45639312 - L2 LINE L2 0 3313 3181 270 340 237 0 chr11 103145324 103145421 -45638051 + L2 LINE L2 3137 3256 -16 313 294 15 44 chr11 103145619 103145755 -45637717 + MIR SINE MIR 20 151 -111 527 241 35 28 chr11 103146001 103146146 -45637326 + MIR SINE MIR 117 262 0 350 188 129 35 chr11 103147452 103147537 -45635935 - Tigger7 DNA MER2_type 0 2487 2395 * 1217 231 44 8 chr11 103147528 103147779 -45635693 - Tigger7 DNA MER2_type -454 279 20 185 227 23 0 chr11 103147799 103147843 -45635629 + L3b LINE CR1 1190 1234 -349 2167 188 36 5 chr11 103148091 103148475 -45634997 + MSTD LTR MaLR 1 396 0 315 104 0 0 chr11 103149105 103149153 -45634319 + (TG)n Simple_repeat Simple_repeat 1 48 0 254 250 54 22 chr11 103149295 103149387 -45634085 - LTR16A1 LTR ERVL 0 457 377 363 371 84 0 chr11 103149789 103149967 -45633505 + L2 LINE L2 2552 2744 -570 384 59 0 0 chr11 103150306 103150357 -45633115 + (TGG)n Simple_repeat Simple_repeat 3 53 0 404 227 23 0 chr11 103150764 103150852 -45632620 + L2 LINE L2 3193 3282 -31 250 217 45 106 chr11 103151461 103151494 -45631978 - HAL1 LINE L1 -1428 1079 1046 2654 32 0 19 chr11 103151494 103151807 -45631665 - AluY SINE Alu -4 307 1 250 217 45 106 chr11 103151807 103151971 -45631501 - HAL1 LINE L1 -1461 1046 894 416 221 41 0 chr11 103152374 103152546 -45630926 + (TA)n Simple_repeat Simple_repeat 1 179 0 30 0 0 0 chr11 103152656 103152686 -45630786 + AT_rich Low_complexity Low_complexity 1 30 0 338 342 26 0 chr11 103153765 103153882 -45629590 - L2 LINE L2 0 3313 3194 270 301 86 38 chr11 103154342 103154551 -45628921 - L2 LINE L2 -250 3022 2804 198 103 0 0 chr11 103155202 103155231 -45628241 + (A)n Simple_repeat Simple_repeat 1 29 0 467 279 32 32 chr11 103156132 103156286 -45627186 - MIR3 SINE MIR -49 159 6 411 350 116 41 chr11 103156538 103156952 -45626520 + L2 LINE L2 2826 3270 -2 2227 108 7 0 chr11 103157751 103158057 -45625415 - AluSp SINE Alu -5 308 1 352 276 118 0 chr11 103158215 103158342 -45625130 + MIR SINE MIR 2 143 -119 758 181 93 0 chr11 103158446 103158650 -45624822 + L1 LINE L1 5054 5276 -870 1309 276 89 11 chr11 103158757 103159206 -45624266 - LTR33 LTR ERVL -22 499 16 182 103 0 0 chr11 103159598 103159627 -45623845 + L3 LINE CR1 1548 1576 -1 4024 139 48 3 chr11 103160053 103160715 -45622757 - L1MA5A LINE L1 0 6297 5606 2132 133 3 0 chr11 103160715 103161024 -45622448 - AluSx SINE Alu -2 310 1 333 328 16 24 chr11 103162369 103162494 -45620978 - MIR SINE MIR -68 140 17 207 291 63 97 chr11 103163292 103163498 -45619974 - L2 LINE L2 -237 3035 2837 450 169 225 21 chr11 103165023 103165165 -45618307 - MIR SINE MIR -59 203 33 366 261 9 45 chr11 103165252 103165363 -45618109 + MIR SINE MIR 30 136 -126 347 226 97 11 chr11 103166075 103166168 -45617304 + L2 LINE L2 3170 3270 -2 198 204 82 0 chr11 103167171 103167220 -45616252 + L2 LINE L2 2934 2986 -327 383 261 22 0 chr11 103167477 103167569 -45615903 + L2 LINE L2 3136 3229 -43 742 282 68 20 chr11 103167619 103167867 -45615605 - MIR SINE MIR -1 261 2 320 317 233 0 chr11 103168959 103169161 -45614311 + MIR SINE MIR 1 249 -13 280 262 100 96 chr11 103169271 103169542 -45613930 - L2 LINE L2 -173 3099 2828 229 204 42 156 chr11 103170255 103170422 -45613050 - MER5B DNA MER1_type -30 148 1 394 283 128 22 chr11 103170496 103170676 -45612796 - L2 LINE L2 -6 3307 3109 318 286 77 44 chr11 103170680 103170862 -45612610 + L2 LINE L2 1803 1990 -1324 563 199 53 64 chr11 103170877 103171048 -45612424 - MIR SINE MIR -37 225 57 326 368 19 0 chr11 103171381 103171487 -45611985 - L2 LINE L2 -27 3245 3138 187 347 248 6 chr11 103171498 103171841 -45611631 + L2 LINE L2 2325 2750 -564 234 233 29 78 chr11 103172129 103172232 -45611240 + MLT1K LTR MaLR 424 521 -67 740 246 24 0 chr11 103172235 103172402 -45611070 + MIR SINE MIR 52 222 -40 195 353 90 16 chr11 103172704 103172826 -45610646 + MIR3 SINE MIR 14 144 -64 2616 148 54 5 chr11 103172941 103173347 -45610125 - MSTB LTR MaLR 0 426 1 321 229 83 96 chr11 103174540 103174780 -45608692 - L1MC4a LINE L1 -140 5981 5743 454 307 123 31 chr11 103174786 103176023 -45607449 - L1MC4a LINE L1 -404 5717 4373 493 282 90 5 chr11 103177049 103177237 -45606235 - MIR SINE MIR -40 222 19 355 189 0 21 chr11 103178397 103178492 -45604980 + GA-rich Low_complexity Low_complexity 4 96 0 2438 70 0 3 chr11 103178702 103179003 -45604469 + AluY SINE Alu 1 300 -11 378 298 84 67 chr11 103179295 103179582 -45603890 - L2 LINE L2 -174 3098 2797 471 209 174 9 chr11 103179582 103179697 -45603775 + MER94 DNA DNA 1 134 0 378 298 84 67 chr11 103179697 103179809 -45603663 - L2 LINE L2 -475 2797 2688 386 267 73 52 chr11 103179878 103180110 -45603362 - L2 LINE L2 0 3313 3077 451 293 123 41 chr11 103180584 103180925 -45602547 - L2 LINE L2 -382 2932 2564 382 254 41 17 chr11 103180960 103181105 -45602367 + MLT1J2 LTR MaLR 68 219 -190 250 249 86 0 chr11 103181166 103181265 -45602207 + MLT1I LTR MaLR 317 409 0 285 321 27 33 chr11 103181265 103181449 -45602023 - L2 LINE L2 -735 2579 2397 1466 192 150 53 chr11 103181894 103182376 -45601096 - MLT1F1 LTR MaLR 0 567 38 575 174 9 0 chr11 103182828 103182943 -45600529 + CT-rich Low_complexity Low_complexity 3 118 0 589 340 82 8 chr11 103182993 103183237 -45600235 + MIR SINE MIR 1 262 0 203 282 42 0 chr11 103183391 103183462 -45600010 + CT-rich Low_complexity Low_complexity 5 78 0 2074 109 0 60 chr11 103183853 103184184 -45599288 + AluSx SINE Alu 1 311 -1 1000 258 96 51 chr11 103184785 103185180 -45598292 + LTR16A LTR ERVL 31 443 -7 580 288 43 11 chr11 103185223 103185407 -45598065 - MIR SINE MIR -26 236 47 537 305 50 94 chr11 103186612 103186953 -45596519 - L2 LINE L2 -9 3263 2938 1023 166 90 57 chr11 103187050 103187261 -45596211 - MER20 DNA MER1_type -1 218 1 642 254 89 32 chr11 103187361 103187609 -45595863 - L2 LINE L2 0 3313 3052 346 290 79 97 chr11 103187829 103188108 -45595364 - L2 LINE L2 -43 3229 2956 503 167 21 21 chr11 103188247 103188343 -45595129 + MIR3 SINE MIR 113 208 0 2480 73 0 0 chr11 103190037 103190338 -45593134 + AluY SINE Alu 1 301 -10 189 0 0 0 chr11 103190460 103190481 -45592991 + (A)n Simple_repeat Simple_repeat 1 21 0 1032 247 84 0 chr11 103190737 103190976 -45592496 + MIR SINE MIR 2 260 -2 256 140 60 0 chr11 103191617 103191667 -45591805 - L2 LINE L2 0 3313 3261 536 340 61 25 chr11 103192003 103192397 -45591075 - ERVL LTR ERVL -660 5104 4697 495 298 18 6 chr11 103192415 103192586 -45590886 - LTR16B LTR ERVL -4 460 288 361 250 12 0 chr11 103192841 103192921 -45590551 - L2 LINE L2 -49 3223 3143 542 231 108 42 chr11 103193040 103193252 -45590220 + MIR SINE MIR 9 234 -28 491 351 15 5 chr11 103194275 103194480 -45588992 - MIR SINE MIR -15 247 41 355 369 101 24 chr11 103194528 103195035 -45588437 + L2 LINE L2 2412 2957 -357 186 103 0 0 chr11 103195875 103195904 -45587568 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 190 150 125 0 chr11 103196344 103196384 -45587088 - L2 LINE L2 -18 3295 3251 * 336 224 71 20 chr11 103196353 103196451 -45587021 - MIR SINE MIR -24 238 136 466 318 109 7 chr11 103196515 103196722 -45586750 - MIR SINE MIR -29 233 8 563 271 52 21 chr11 103197096 103197263 -45586209 + L1MDa LINE L1 34 209 -6331 1888 215 39 28 chr11 103197263 103197653 -45585819 - MSTD LTR MaLR -2 394 1 563 271 52 21 chr11 103197653 103197677 -45585795 + L1MDa LINE L1 209 231 -6309 * 2248 241 34 4 chr11 103197667 103198161 -45585311 - MSTD-int LTR MaLR -15 1720 1212 889 180 16 46 chr11 103198157 103198351 -45585121 - MSTD-int LTR MaLR -1546 189 2 * 2384 201 5 0 chr11 103198353 103198747 -45584725 - MSTD LTR MaLR 0 396 1 375 268 12 0 chr11 103198748 103198830 -45584642 + L1MDa LINE L1 197 279 -6261 5858 218 38 31 chr11 103199215 103199675 -45583797 + L1MDa LINE L1 847 1302 -5238 1651 155 0 4 chr11 103199675 103199920 -45583552 + AluSx SINE Alu 6 249 -63 5858 218 38 31 chr11 103199920 103200423 -45583049 + L1MDa LINE L1 1302 1800 -4740 2035 133 0 0 chr11 103200423 103200858 -45582614 + AluSx SINE Alu 1 435 0 5858 218 38 31 chr11 103200858 103203226 -45580246 + L1MDa LINE L1 1800 4176 -2364 356 306 96 13 chr11 103203482 103203639 -45579833 + MIR3 SINE MIR 6 175 -33 452 267 46 8 chr11 103204677 103204808 -45578664 + MIR SINE MIR 68 203 -59 202 231 0 0 chr11 103204888 103204927 -45578545 + A-rich Low_complexity Low_complexity 5 43 0 655 291 37 11 chr11 103204945 103205134 -45578338 + MIR SINE MIR 6 199 -63 1264 233 51 13 chr11 103205136 103205449 -45578023 + MLT1J2 LTR MaLR 1 325 -125 2293 276 84 11 chr11 103209149 103209900 -45573572 + L2 LINE L2 1988 2793 -521 1182 222 148 74 chr11 103209903 103210376 -45573096 + MLT1H LTR MaLR 5 512 -37 709 226 33 35 chr11 103210418 103210660 -45572812 + L2 LINE L2 2789 3030 -283 405 236 12 141 chr11 103211010 103211123 -45572349 + L2 LINE L2 3103 3170 -143 1069 179 46 5 chr11 103211123 103211319 -45572153 + MER3 DNA MER1_type 5 208 -1 405 236 12 141 chr11 103211319 103211447 -45572025 + L2 LINE L2 3170 3313 0 1861 149 7 17 chr11 103212123 103212418 -45571054 + AluJo SINE Alu 1 292 -20 195 243 0 0 chr11 103212457 103212494 -45570978 - MIR SINE MIR -31 231 195 22 0 0 0 chr11 103213197 103213219 -45570253 + AT_rich Low_complexity Low_complexity 1 22 0 340 316 7 53 chr11 103213295 103213447 -45570025 - MIR SINE MIR -33 229 85 305 292 117 29 chr11 103213486 103213657 -45569815 - MIR SINE MIR -49 213 28 928 158 0 0 chr11 103213736 103213869 -45569603 + FLAM_C SINE Alu 1 133 0 23 0 0 0 chr11 103214217 103214240 -45569232 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr11 103214382 103214403 -45569069 + AT_rich Low_complexity Low_complexity 1 21 0 44129 29 22 1 chr11 103215172 103221045 -45562427 - L1HS LINE L1 -157 5998 2 358 239 109 11 chr11 103221046 103221138 -45562334 - MER58 DNA MER1_type -114 101 1 208 258 16 0 chr11 103221194 103221256 -45562216 + T-rich Low_complexity Low_complexity 2 64 0 289 324 59 29 chr11 103221261 103221431 -45562041 + MIR SINE MIR 13 187 -75 722 206 78 49 chr11 103221448 103221652 -45561820 - MER63A DNA MER1_type 0 210 1 183 42 0 0 chr11 103222287 103222311 -45561161 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 426 260 108 67 chr11 103222340 103222609 -45560863 - MLT1J LTR MaLR -2 509 230 1030 264 118 37 chr11 103223349 103223814 -45559658 + LTR33A LTR ERVL 4 506 -17 368 291 23 70 chr11 103223821 103223833 -45559639 - MIR SINE MIR -90 172 161 1665 235 11 21 chr11 103223833 103224211 -45559261 - MLT1A2 LTR MaLR 0 374 1 368 291 23 70 chr11 103224211 103224370 -45559102 - MIR SINE MIR -101 161 9 299 296 9 52 chr11 103224626 103224741 -45558731 - MIR SINE MIR -79 129 20 6941 160 114 40 chr11 103225858 103227325 -45556147 - MER52A LTR ERV1 0 1755 180 332 238 16 0 chr11 103227326 103227389 -45556083 - MER52A LTR ERV1 -1691 64 1 1283 223 57 37 chr11 103228053 103228541 -45554931 + MLT1E LTR MaLR 1 593 0 2110 153 46 0 chr11 103228899 103229225 -45554247 - MER2 DNA MER2_type -3 341 1 292 292 15 105 chr11 103229398 103229665 -45553807 - L2 LINE L2 -192 3080 2838 497 283 7 7 chr11 103230168 103230320 -45553152 - L1ME2 LINE L1 -9 6155 6004 186 43 0 0 chr11 103230334 103230357 -45553115 + (T)n Simple_repeat Simple_repeat 1 23 0 315 0 0 0 chr11 103230741 103230776 -45552696 + (TG)n Simple_repeat Simple_repeat 1 35 0 205 300 0 14 chr11 103230776 103230846 -45552626 + GA-rich Low_complexity Low_complexity 4 72 0 211 292 45 11 chr11 103231045 103231134 -45552338 + MIR SINE MIR 81 172 -90 30 0 0 0 chr11 103231502 103231532 -45551940 + AT_rich Low_complexity Low_complexity 1 30 0 1053 271 95 68 chr11 103231666 103233729 -45549743 - L1ME3A LINE L1 -96 6025 3876 851 249 135 34 chr11 103233771 103234156 -45549316 + MLT1J1 LTR MaLR 5 428 -18 1006 271 149 36 chr11 103234175 103235097 -45548375 - L1ME3A LINE L1 -2334 3812 2787 361 294 34 25 chr11 103235199 103235318 -45548154 - MIR3 SINE MIR -76 132 13 196 29 0 57 chr11 103235369 103235404 -45548068 + (TA)n Simple_repeat Simple_repeat 1 33 0 1736 159 10 17 chr11 103235913 103236209 -45547263 + AluJo SINE Alu 1 294 -18 474 308 87 44 chr11 103236708 103237029 -45546443 + HAL1 LINE L1 496 830 -1677 738 209 103 43 chr11 103237033 103237267 -45546205 + L1M4 LINE L1 4860 5107 -1039 836 88 15 88 chr11 103237336 103237473 -45545999 + Tigger5 DNA MER2_type 2197 2323 0 1516 314 75 37 chr11 103237474 103238466 -45545006 - L2 LINE L2 -116 3197 2161 495 88 135 188 chr11 103238466 103238658 -45544814 - MER33 DNA MER1_type -2 322 141 886 196 0 0 chr11 103238662 103238820 -45544652 - FRAM SINE Alu -18 158 1 347 168 271 9 chr11 103238821 103238928 -45544544 - MER33 DNA MER1_type -181 143 9 1267 318 148 19 chr11 103238928 103239733 -45543739 - L2 LINE L2 -1535 1779 871 503 170 21 0 chr11 103239837 103239931 -45543541 + L1MD1 LINE L1 6147 6242 0 223 264 28 28 chr11 103240264 103240336 -45543136 - MIR SINE MIR -180 82 11 1635 239 85 55 chr11 103240644 103241246 -45542226 - L1MB7 LINE L1 -9 6175 5556 21 36 0 0 chr11 103241250 103241278 -45542194 + AT_rich Low_complexity Low_complexity 1 28 0 6614 65 21 6 chr11 103241422 103242286 -45541186 - L1PA8 LINE L1 -8 6164 5288 2208 63 0 11 chr11 103242340 103242611 -45540861 - AluY SINE Alu -14 297 30 347 187 0 0 chr11 103242770 103242845 -45540627 - L1MA10 LINE L1 -3 6331 6257 2622 79 6 3 chr11 103242858 103243199 -45540273 - L1PB1 LINE L1 -2 6149 5808 191 359 161 5 chr11 103243299 103243522 -45539950 - L2 LINE L2 -2591 723 466 203 298 96 39 chr11 103243574 103243678 -45539794 + MER91C DNA MER1_type 1 110 -30 241 291 171 34 chr11 103243687 103243862 -45539610 - L2 LINE L2 -2975 339 141 310 206 27 55 chr11 103244583 103244656 -45538816 + L2 LINE L2 3148 3218 -54 377 246 16 63 chr11 103244951 103245077 -45538395 + MIR SINE MIR 47 166 -96 685 175 168 0 chr11 103245085 103245228 -45538244 + MER46B DNA MER2_type 1 42 -194 253 167 0 0 chr11 103245905 103245953 -45537519 - L1P5 LINE L1 -326 6544 6497 258 178 53 46 chr11 103245953 103246105 -45537367 + (TA)n Simple_repeat Simple_repeat 1 153 0 3983 128 5 119 chr11 103246105 103246126 -45537346 - L1P5 LINE L1 -360 6507 6485 183 80 0 0 chr11 103246126 103246151 -45537321 + (TG)n Simple_repeat Simple_repeat 1 25 0 3983 128 5 119 chr11 103246151 103247830 -45535642 - L1P5 LINE L1 -382 6485 5017 * 5340 116 88 8 chr11 103247825 103249351 -45534121 - L1P5 LINE L1 -4722 2141 232 1582 241 15 0 chr11 103249354 103249682 -45533790 - L1ME1 LINE L1 -332 5903 5571 2337 250 83 7 chr11 103249689 103250388 -45533084 - L1ME1 LINE L1 -5358 1038 287 808 289 40 31 chr11 103250398 103250821 -45532651 - L1MC/D LINE L1 -698 5468 5366 187 313 15 45 chr11 103251444 103251511 -45531961 + L3 LINE CR1 1499 1563 -14 365 298 142 24 chr11 103251922 103252127 -45531345 - MIR SINE MIR 0 262 34 183 129 0 0 chr11 103252509 103252540 -45530932 + (CA)n Simple_repeat Simple_repeat 1 31 0 263 296 153 0 chr11 103253194 103253292 -45530180 - MIR SINE MIR -64 144 32 251 161 0 48 chr11 103253413 103253475 -45529997 + CT-rich Low_complexity Low_complexity 3 61 0 14868 59 5 6 chr11 103253599 103256031 -45527441 + L1PA6 LINE L1 3478 5903 -251 263 321 188 18 chr11 103257075 103257299 -45526173 + MIR SINE MIR 1 262 0 185 261 87 43 chr11 103257295 103257364 -45526108 - L2 LINE L2 -50 3263 3192 * 342 253 22 22 chr11 103257768 103257859 -45525613 - MLT1K LTR MaLR -347 241 151 219 254 0 36 chr11 103259134 103259189 -45524283 + polypurine Low_complexity Low_complexity 2 54 0 285 51 0 0 chr11 103259265 103259304 -45524168 + (GA)n Simple_repeat Simple_repeat 2 40 0 243 0 0 0 chr11 103259307 103259334 -45524138 + (TG)n Simple_repeat Simple_repeat 1 27 0 201 39 0 0 chr11 103259333 103259359 -45524113 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 2744 170 22 0 chr11 103259950 103260397 -45523075 + LTR32 LTR ERVL 15 471 0 245 250 62 0 chr11 103260980 103261044 -45522428 + L2 LINE L2 3153 3220 -52 690 105 0 0 chr11 103261074 103261179 -45522293 + (GGAA)n Simple_repeat Simple_repeat 4 108 0 252 239 56 14 chr11 103263022 103263093 -45520379 - LTR33A LTR ERVL -328 195 122 514 308 109 5 chr11 103263745 103263966 -45519506 - MIR SINE MIR -13 249 6 1766 211 27 15 chr11 103264200 103264531 -45518941 - MER21B LTR ERV1 -528 335 1 345 220 20 60 chr11 103264558 103264658 -45518814 - L2 LINE L2 -105 3208 3113 1017 269 74 32 chr11 103264670 103265049 -45518423 - LTR16C LTR ERVL 0 491 97 632 332 70 20 chr11 103265174 103265539 -45517933 - L2 LINE L2 -200 3113 2733 266 235 186 39 chr11 103265931 103266033 -45517439 - MIR SINE MIR -78 184 68 203 195 24 0 chr11 103266142 103266183 -45517289 + (CATA)n Simple_repeat Simple_repeat 3 44 0 221 214 31 92 chr11 103266272 103266370 -45517102 - L2 LINE L2 -1288 2026 1935 2340 87 10 3 chr11 103266738 103267038 -45516434 - AluSg SINE Alu -8 302 1 2471 152 29 11 chr11 103267503 103267956 -45515516 - MER65C LTR ERV1 0 461 1 644 233 13 20 chr11 103269106 103269256 -45514216 + MER5A DNA MER1_type 35 183 -6 984 153 0 0 chr11 103269923 103270073 -45513399 - FRAM SINE Alu -3 173 24 256 189 19 0 chr11 103270144 103270197 -45513275 - MLT1J2 LTR MaLR -312 138 85 221 320 13 0 chr11 103270397 103270475 -45512997 + CT-rich Low_complexity Low_complexity 3 81 0 547 307 18 24 chr11 103270720 103270886 -45512586 - MER5A DNA MER1_type -8 181 17 403 304 37 107 chr11 103271035 103271361 -45512111 + L2 LINE L2 2968 3270 -2 2487 88 0 0 chr11 103271481 103271788 -45511684 + AluSc SINE Alu 1 307 -2 25 0 0 0 chr11 103271802 103271827 -45511645 + GC_rich Low_complexity Low_complexity 1 25 0 546 198 18 0 chr11 103271959 103272070 -45511402 - L1MD1 LINE L1 -15 6227 6115 3221 233 45 25 chr11 103272073 103273135 -45510337 - L1M4 LINE L1 -1127 5019 3936 2193 213 57 8 chr11 103273243 103273840 -45509632 + L1ME2 LINE L1 5536 6161 -3 633 258 0 8 chr11 103273840 103273968 -45509504 + MIR SINE MIR 24 150 -112 2394 226 46 70 chr11 103274385 103274561 -45508911 - L1ME LINE L1 -720 5442 5263 17785 42 5 0 chr11 103274561 103277547 -45505925 - L1PA5 LINE L1 -2 6152 3157 2394 226 46 70 chr11 103277547 103278241 -45505231 - L1ME LINE L1 -899 5263 4611 653 110 100 0 chr11 103278241 103278341 -45505131 - HY1 scRNA scRNA -2 110 1 2394 226 46 70 chr11 103278341 103278659 -45504813 - L1ME LINE L1 -1551 4611 4287 16499 126 30 16 chr11 103279063 103281756 -45501716 - Tigger4(Zombi) DNA MER2_type 0 2731 1 309 286 48 61 chr11 103282593 103282740 -45500732 - MIR3 SINE MIR -27 181 37 208 237 51 0 chr11 103283066 103283125 -45500347 - MIR SINE MIR -13 249 188 651 310 81 12 chr11 103283973 103284231 -45499241 + L3 LINE CR1 1252 1527 -50 2169 129 7 0 chr11 103284322 103284631 -45498841 + AluSx SINE Alu 1 311 -1 248 313 60 22 chr11 103284681 103284815 -45498657 + MIR SINE MIR 52 190 -72 547 158 0 0 chr11 103285507 103285589 -45497883 + AluSg/x SINE Alu 210 291 -21 275 259 45 18 chr11 103285864 103285976 -45497496 + MLT1L LTR MaLR 496 610 -5 1078 197 55 17 chr11 103286031 103286321 -45497151 - L1MA9 LINE L1 -25 6287 5987 26 30 0 0 chr11 103286349 103286382 -45497090 + AT_rich Low_complexity Low_complexity 1 33 0 225 0 0 0 chr11 103286718 103286743 -45496729 + (TCTCCC)n Simple_repeat Simple_repeat 2 26 0 8498 142 43 22 chr11 103286743 103288099 -45495373 + SVA Other Other 1 1385 -1 25 0 0 0 chr11 103288099 103288124 -45495348 + AT_rich Low_complexity Low_complexity 1 25 0 375 341 30 0 chr11 103288320 103288452 -45495020 + MIR SINE MIR 5 140 -122 341 298 94 28 chr11 103289531 103289712 -45493760 - MIR SINE MIR -57 205 13 482 306 157 0 chr11 103289783 103289930 -45493542 + MER5A DNA MER1_type 19 188 -1 260 220 0 0 chr11 103292077 103292127 -45491345 - L2 LINE L2 0 3313 3264 2052 158 42 66 chr11 103292127 103292628 -45490844 + LTR22B LTR ERVK 1 489 -3 1497 179 18 82 chr11 103292679 103293069 -45490403 + MLT1A1 LTR MaLR 1 365 0 688 214 125 0 chr11 103293266 103293434 -45490038 - MIR SINE MIR -26 236 48 336 291 156 0 chr11 103293443 103293622 -45489850 - L2 LINE L2 -261 3011 2805 687 267 81 15 chr11 103293646 103293919 -45489553 - L1ME1 LINE L1 -15 6151 5861 193 29 29 29 chr11 103293920 103293955 -45489517 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 5495 161 28 27 chr11 103293956 103294071 -45489401 - L1PA16 LINE L1 -23 6143 6030 2154 109 0 32 chr11 103294071 103294382 -45489090 - AluSg SINE Alu -9 301 1 5495 161 28 27 chr11 103294382 103296324 -45487148 - L1PA16 LINE L1 -136 6030 4086 1453 216 115 16 chr11 103296323 103296649 -45486823 - L1ME1 LINE L1 -300 5866 5574 * 279 0 0 0 chr11 103296649 103296680 -45486792 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1798 154 26 0 chr11 103296684 103296957 -45486515 - AluJo SINE Alu -32 280 1 1453 216 115 16 chr11 103296957 103296970 -45486502 - L1ME1 LINE L1 -594 5572 5562 207 0 0 0 chr11 103296970 103296993 -45486479 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1453 216 115 16 chr11 103296993 103297100 -45486372 - L1ME1 LINE L1 -604 5562 5369 1246 219 87 45 chr11 103297090 103297858 -45485614 - L1MCc LINE L1 -3512 3052 2284 * 1230 156 0 5 chr11 103297896 103298107 -45485365 + MER2 DNA MER2_type 1 210 -135 376 236 14 0 chr11 103298135 103298207 -45485265 + MER2 DNA MER2_type 273 345 0 2000 246 105 62 chr11 103298218 103299841 -45483631 - L1MCc LINE L1 -4500 2245 432 396 276 90 119 chr11 103300278 103300546 -45482926 - L1MCc LINE L1 -5781 264 5 372 261 26 26 chr11 103300563 103300678 -45482794 - L2 LINE L2 -502 2812 2698 251 323 103 32 chr11 103301246 103301401 -45482071 - MER5A DNA MER1_type -2 187 22 656 317 0 5 chr11 103301430 103301638 -45481834 - LTR16C LTR ERVL 0 491 285 189 288 14 68 chr11 103302839 103302912 -45480560 - L2 LINE L2 -4 3309 3241 180 111 0 0 chr11 103303020 103303047 -45480425 + (TATATG)n Simple_repeat Simple_repeat 4 30 0 309 202 11 75 chr11 103303059 103303153 -45480319 - MIR SINE MIR -56 206 119 412 288 92 9 chr11 103303609 103303824 -45479648 - MIR SINE MIR -7 255 12 412 306 66 0 chr11 103303994 103304115 -45479357 + L2 LINE L2 3144 3272 0 187 289 77 0 chr11 103304663 103304715 -45478757 - L2 LINE L2 -48 3265 3210 713 274 87 25 chr11 103304715 103305036 -45478436 - MER57A LTR ERV1 0 403 63 331 315 40 10 chr11 103305242 103305371 -45478101 - MIR SINE MIR -65 143 20 1505 104 0 0 chr11 103305561 103305790 -45477682 - AluSg/x SINE Alu 0 315 87 239 313 46 53 chr11 103306597 103306728 -45476744 - MIR3 SINE MIR -30 178 49 1647 237 98 37 chr11 103307063 103307403 -45476069 + L2 LINE L2 2425 2813 -500 393 22 0 0 chr11 103307403 103307449 -45476023 + (CA)n Simple_repeat Simple_repeat 2 47 0 1647 237 98 37 chr11 103307449 103307675 -45475797 + L2 LINE L2 2813 3024 -289 2308 116 0 0 chr11 103307780 103308082 -45475390 + AluSx SINE Alu 1 302 -10 529 279 0 0 chr11 103308221 103308332 -45475140 - L2 LINE L2 -292 3021 2911 184 375 48 40 chr11 103308476 103308727 -45474745 - L2 LINE L2 -1353 1961 1709 980 189 0 0 chr11 103309706 103309875 -45473597 + AluJo SINE Alu 125 293 -19 1975 161 9 3 chr11 103310306 103310636 -45472836 + Tigger7 DNA MER2_type 17 348 -202 860 120 13 20 chr11 103310627 103310777 -45472695 + Tigger7 DNA MER2_type 2343 2491 0 * 1668 222 103 29 chr11 103311734 103312257 -45471215 - MLT1E LTR MaLR -28 565 4 1650 159 4 4 chr11 103313537 103313795 -45469677 - AluSx SINE Alu -26 286 29 22 0 0 0 chr11 103314132 103314154 -45469318 + AT_rich Low_complexity Low_complexity 1 22 0 332 311 78 36 chr11 103314270 103314437 -45469035 - HAL1 LINE L1 -109 2398 2225 661 324 60 39 chr11 103314441 103315126 -45468346 - HAL1 LINE L1 -1052 1455 757 221 274 70 76 chr11 103315823 103315980 -45467492 + MIR SINE MIR 89 244 -18 428 317 77 31 chr11 103316712 103316948 -45466524 + MIR SINE MIR 4 256 -6 658 273 42 66 chr11 103318337 103318595 -45464877 + MIR SINE MIR 7 253 -9 255 125 0 0 chr11 103318596 103318636 -45464836 + (CAT)n Simple_repeat Simple_repeat 1 40 0 192 256 0 0 chr11 103320763 103320806 -45462666 - L2 LINE L2 -16 3297 3255 246 229 0 0 chr11 103321239 103321287 -45462185 + (TG)n Simple_repeat Simple_repeat 2 49 0 3539 154 9 16 chr11 103322008 103322580 -45460892 - MER6A DNA MER2_type 0 605 38 335 289 50 50 chr11 103323521 103323642 -45459830 - L2 LINE L2 -1 3271 3151 181 338 46 64 chr11 103323651 103323932 -45459540 - L2 LINE L2 -354 2960 2685 198 267 86 29 chr11 103323932 103324037 -45459435 + L2 LINE L2 2725 2835 -479 666 306 122 28 chr11 103324065 103324392 -45459080 + L2 LINE L2 2906 3263 -9 291 292 19 65 chr11 103324816 103324970 -45458502 + L3b LINE CR1 1215 1361 -222 409 222 15 74 chr11 103325815 103325950 -45457522 + Charlie5 DNA MER1_type 1 127 -2485 251 303 0 0 chr11 103326382 103326458 -45457014 + MIR3 SINE MIR 125 200 -8 324 311 33 66 chr11 103326905 103327146 -45456326 - L2 LINE L2 -839 2475 2243 577 246 192 10 chr11 103327181 103327384 -45456088 + MIR SINE MIR 2 241 -21 373 327 4 4 chr11 103327389 103327545 -45455927 - MIR SINE MIR -60 148 2 338 269 149 7 chr11 103327548 103327689 -45455783 + MIR SINE MIR 102 262 0 651 112 0 0 chr11 103328025 103328114 -45455358 - 5S rRNA rRNA -32 89 1 297 344 38 31 chr11 103329577 103329737 -45453735 - MIR SINE MIR -55 207 47 314 274 118 0 chr11 103329741 103329843 -45453629 - MIR SINE MIR -82 180 67 409 203 102 8 chr11 103330741 103330907 -45452565 - MER96B DNA MER1_type? -182 235 8 2076 93 0 52 chr11 103331060 103331351 -45452121 - AluY SINE Alu -35 276 1 23 0 0 0 chr11 103331902 103331925 -45451547 + AT_rich Low_complexity Low_complexity 1 23 0 6245 141 20 1 chr11 103331925 103333513 -45449959 - L1PB1 LINE L1 0 6151 4536 183 273 61 0 chr11 103333575 103333641 -45449831 + MIR SINE MIR 119 188 -74 36 0 0 0 chr11 103333766 103333802 -45449670 + AT_rich Low_complexity Low_complexity 1 36 0 253 351 21 11 chr11 103334296 103334390 -45449082 - MIR SINE MIR -78 130 36 459 0 0 0 chr11 103334740 103334791 -45448681 + (CA)n Simple_repeat Simple_repeat 2 52 0 2587 178 19 7 chr11 103335027 103335454 -45448018 + MSTB1 LTR MaLR 1 432 0 249 291 149 28 chr11 103335706 103335847 -45447625 + MIR SINE MIR 48 205 -57 2233 111 0 10 chr11 103335956 103336281 -45447191 + AluSx SINE Alu 3 312 0 184 262 49 33 chr11 103336399 103336460 -45447012 + MIR SINE MIR 41 102 -160 237 143 24 0 chr11 103336510 103336552 -45446920 - MIR SINE MIR -30 232 190 * 292 218 0 121 chr11 103336548 103336672 -45446800 + MIR SINE MIR 110 218 -44 6319 217 80 28 chr11 103336729 103338767 -45444705 + L1MDa LINE L1 38 2351 -4189 245 146 21 0 chr11 103338867 103338915 -45444557 + L1MD2 LINE L1 6102 6150 -209 * 378 250 7 5 chr11 103338912 103339058 -45444414 + L1MC3 LINE L1 6198 6342 -1443 216 0 0 0 chr11 103339058 103339082 -45444390 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2173 107 0 3 chr11 103339084 103339384 -45444088 - AluSg SINE Alu -11 299 1 378 250 7 5 chr11 103339384 103339398 -45444074 + L1MC3 LINE L1 6342 7783 -2 230 259 0 0 chr11 103340497 103340551 -45442921 - MLT1J LTR MaLR -145 366 313 340 250 12 12 chr11 103341265 103341345 -45442127 + L2 LINE L2 3230 3309 -4 311 268 239 0 chr11 103342044 103342186 -45441286 - MIR SINE MIR -55 207 32 296 361 26 83 chr11 103343027 103343293 -45440179 - L2 LINE L2 -27 3245 2995 1081 241 110 3 chr11 103343349 103343639 -45439833 + MER69 DNA AcHobo 19 339 -2187 1364 241 25 11 chr11 103343746 103344107 -45439365 + MER69 DNA AcHobo 2161 2526 0 452 152 0 0 chr11 103344129 103344195 -45439277 - AluJ/FLAM SINE Alu -229 83 18 3842 119 68 3 chr11 103344195 103344764 -45438708 + L1PA16 LINE L1 5561 6166 0 3200 324 64 36 chr11 103346681 103350871 -45432601 - HERV16 LTR ERVL -824 4172 76 1072 317 16 8 chr11 103351031 103351400 -45432072 + LTR16B LTR ERVL 93 464 0 649 293 29 10 chr11 103351400 103351605 -45431867 + LTR16C LTR ERVL 283 491 0 183 156 0 0 chr11 103352403 103352435 -45431037 + (TA)n Simple_repeat Simple_repeat 2 33 0 862 330 84 23 chr11 103353352 103353929 -45429543 + L2 LINE L2 2394 3004 -309 293 250 133 85 chr11 103353973 103354161 -45429311 + L2 LINE L2 3104 3300 -13 222 91 0 0 chr11 103354161 103354194 -45429278 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 1487 275 39 36 chr11 103354538 103354584 -45428888 - LTR16A LTR ERVL -7 443 399 1985 194 6 6 chr11 103354584 103354944 -45428528 + MLT1A1 LTR MaLR 3 362 -3 1487 275 39 36 chr11 103354944 103355337 -45428135 - LTR16A LTR ERVL -51 399 3 1078 129 137 62 chr11 103355570 103355826 -45427646 - L1MA9 LINE L1 -6 6306 6032 1840 130 0 0 chr11 103355831 103356100 -45427372 + AluSg SINE Alu 42 310 0 311 175 0 0 chr11 103356104 103356161 -45427311 + L1MA9 LINE L1 5981 6037 -275 403 209 43 166 chr11 103356603 103356734 -45426738 - MER5A DNA MER1_type -3 186 89 2413 85 3 3 chr11 103356734 103357041 -45426431 + AluSc SINE Alu 1 307 -2 403 209 43 166 chr11 103357041 103357120 -45426352 - MER5A DNA MER1_type -100 89 2 556 316 65 13 chr11 103358032 103358263 -45425209 - MIR SINE MIR -17 245 3 189 0 0 0 chr11 103359026 103359047 -45424425 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 439 313 47 0 chr11 103359050 103359178 -45424294 + L2 LINE L2 3180 3313 0 919 271 28 0 chr11 103359218 103359465 -45424007 - MIR SINE MIR -2 260 7 198 0 0 0 chr11 103360596 103360618 -45422854 + (TG)n Simple_repeat Simple_repeat 2 23 0 253 250 0 0 chr11 103360901 103360953 -45422519 - L2 LINE L2 -7 3306 3255 188 250 83 36 chr11 103361069 103361153 -45422319 - L2 LINE L2 -208 3064 2977 468 294 35 12 chr11 103361373 103361543 -45421929 - MIR SINE MIR -73 189 16 647 244 57 38 chr11 103362076 103362285 -45421187 - MLT1K LTR MaLR -75 513 301 323 339 40 8 chr11 103362363 103362487 -45420985 - MLT1K LTR MaLR -438 150 23 228 262 16 0 chr11 103362625 103362686 -45420786 + L2 LINE L2 2902 2963 -309 217 122 0 41 chr11 103362808 103362857 -45420615 + (TTC)n Simple_repeat Simple_repeat 2 48 0 2182 152 42 54 chr11 103363957 103364384 -45419088 + MSTC LTR MaLR 7 428 0 456 261 43 31 chr11 103364706 103364867 -45418605 - MIR SINE MIR -3 259 97 1939 131 7 0 chr11 103365059 103365365 -45418107 + AluSq SINE Alu 1 308 0 202 438 21 0 chr11 103365676 103365772 -45417700 + L2 LINE L2 3175 3272 0 1367 302 67 8 chr11 103366158 103366648 -45416824 - L2 LINE L2 -1702 1612 1094 360 326 129 27 chr11 103366802 103367289 -45416183 + L2 LINE L2 1993 2529 -785 29 28 0 0 chr11 103367339 103367375 -45416097 + AT_rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr11 103368007 103368027 -45415445 + (T)n Simple_repeat Simple_repeat 1 20 0 1757 92 121 0 chr11 103368292 103368541 -45414931 + AluSc SINE Alu 1 279 -30 431 260 41 71 chr11 103368691 103368887 -45414585 - HAL1 LINE L1 -2314 193 4 1570 167 17 51 chr11 103370530 103370858 -45412614 - AluJo SINE Alu 0 318 1 1130 78 30 6 chr11 103370951 103371117 -45412355 + L1PA10 LINE L1 5999 6168 0 328 303 110 14 chr11 103371375 103371520 -45411952 - L3 LINE CR1 -102 1475 1317 298 344 7 78 chr11 103371626 103371780 -45411692 - MLT1K LTR MaLR -348 240 98 207 0 0 0 chr11 103372599 103372622 -45410850 + (TA)n Simple_repeat Simple_repeat 2 24 0 1290 233 33 19 chr11 103372642 103373006 -45410466 + LTR10C LTR ERV1 188 479 -26 34 55 0 0 chr11 103373806 103373861 -45409611 + AT_rich Low_complexity Low_complexity 1 55 0 260 280 80 10 chr11 103373886 103373986 -45409486 - L3 LINE CR1 -771 806 700 660 339 72 22 chr11 103374043 103374362 -45409110 + L3 LINE CR1 167 501 -1076 426 262 104 11 chr11 103377420 103377603 -45405869 + L1ME4a LINE L1 5683 5882 -239 288 292 75 0 chr11 103377655 103377775 -45405697 + L1ME4a LINE L1 5981 6109 -12 298 325 134 0 chr11 103378518 103378675 -45404797 + MIR SINE MIR 49 226 -36 582 336 51 5 chr11 103378753 103378970 -45404502 + MIR SINE MIR 21 247 -15 669 251 76 6 chr11 103379812 103380010 -45403462 - MIR SINE MIR -14 248 33 1023 272 4 4 chr11 103380781 103381027 -45402445 - MLT1H1 LTR MaLR 0 555 310 532 202 20 0 chr11 103381035 103381134 -45402338 - MLT1G LTR MaLR -489 101 1 854 210 119 99 chr11 103381705 103382100 -45401372 - MLT1A1 LTR MaLR -25 403 1 25 0 0 0 chr11 103382114 103382139 -45401333 + AT_rich Low_complexity Low_complexity 1 25 0 1978 148 0 3 chr11 103382242 103382533 -45400939 + AluSx SINE Alu 1 290 -22 648 277 58 5 chr11 103382621 103382809 -45400663 - MLT1H1 LTR MaLR -132 423 226 21 0 0 0 chr11 103382862 103382883 -45400589 + AT_rich Low_complexity Low_complexity 1 21 0 2138 89 40 0 chr11 103382883 103383187 -45400285 - L1PB1 LINE L1 0 6151 5836 614 244 0 8 chr11 103383196 103383319 -45400153 - MLT1H1 LTR MaLR -354 236 115 209 307 32 78 chr11 103383350 103383568 -45399904 - L2 LINE L2 -197 3075 2868 267 31 0 0 chr11 103383665 103383697 -45399775 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 7057 54 0 0 chr11 103383707 103384698 -45398774 - L1PA5 LINE L1 0 6154 5171 1109 281 86 21 chr11 103384739 103385212 -45398260 + MER115 DNA AcHobo 84 667 -26 241 337 12 0 chr11 103385314 103385397 -45398075 + L2 LINE L2 3230 3313 0 * 415 341 50 6 chr11 103385381 103385563 -45397909 - L2 LINE L2 -575 2739 2550 240 404 86 0 chr11 103385592 103385743 -45397729 + L2 LINE L2 3104 3267 -5 279 213 213 0 chr11 103385773 103385848 -45397624 - MIR SINE MIR -76 186 96 * 551 290 150 45 chr11 103385843 103386341 -45397131 + L2 LINE L2 2762 3298 -15 222 91 0 0 chr11 103386351 103386384 -45397088 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 189 259 19 37 chr11 103386407 103386461 -45397011 - MIR SINE MIR -195 67 15 423 303 37 0 chr11 103386482 103386591 -45396881 + L2 LINE L2 3200 3312 -1 235 335 95 34 chr11 103386768 103387093 -45396379 - L2 LINE L2 -674 2640 2296 1654 179 13 32 chr11 103387412 103387724 -45395748 + AluJo SINE Alu 1 306 -6 246 116 0 0 chr11 103387856 103387899 -45395573 + (TG)n Simple_repeat Simple_repeat 2 44 0 6865 144 17 35 chr11 103387913 103388691 -45394781 + Tigger3b DNA MER2_type 14 763 -2265 1986 146 20 23 chr11 103388691 103389081 -45394391 + L1PA13 LINE L1 5775 6163 0 6865 144 17 35 chr11 103389081 103389541 -45393931 + Tigger3b DNA MER2_type 763 1230 -1 630 44 26 26 chr11 103389541 103389655 -45393817 + (TAGA)n Simple_repeat Simple_repeat 4 117 0 336 24 0 0 chr11 103390162 103390203 -45393269 + (TC)n Simple_repeat Simple_repeat 1 41 0 560 241 35 20 chr11 103390588 103390787 -45392685 + L1ME4a LINE L1 5660 5861 -260 317 223 149 33 chr11 103391378 103391499 -45391973 + MIR SINE MIR 51 185 -77 379 363 113 31 chr11 103391500 103391820 -45391652 - L2 LINE L2 0 3272 2927 849 315 144 14 chr11 103392248 103392803 -45390669 + L3 LINE CR1 849 1475 -102 273 242 16 0 chr11 103392795 103392857 -45390615 + MIR SINE MIR 92 154 -108 * 235 356 0 11 chr11 103392931 103393018 -45390454 + L3 LINE CR1 1482 1567 -10 28 61 0 0 chr11 103393092 103393141 -45390331 + AT_rich Low_complexity Low_complexity 1 49 0 1062 152 184 8 chr11 103393285 103393535 -45389937 + MER33 DNA MER1_type 6 299 -25 385 318 14 64 chr11 103394136 103394356 -45389116 + MIR SINE MIR 16 224 -38 826 304 75 30 chr11 103394441 103394882 -45388590 - L2 LINE L2 -6 3307 2847 958 270 126 52 chr11 103394889 103395423 -45388049 - L2 LINE L2 -1390 1924 1352 226 208 0 57 chr11 103397601 103397654 -45385818 + L2 LINE L2 3223 3272 0 26 0 0 0 chr11 103397739 103397765 -45385707 + AT_rich Low_complexity Low_complexity 1 26 0 245 263 105 0 chr11 103399003 103399079 -45384393 + MIR SINE MIR 100 183 -79 * 455 333 41 36 chr11 103399069 103399288 -45384184 + MIR SINE MIR 11 230 -32 317 319 44 123 chr11 103399917 103400397 -45383075 + L2 LINE L2 2831 3272 0 4184 193 45 24 chr11 103400586 103401661 -45381811 - L1MDa LINE L1 -4473 2067 971 2412 274 61 22 chr11 103401669 103402817 -45380655 + L1M4 LINE L1 2977 4169 -1977 273 274 37 7 chr11 103402818 103402953 -45380519 + L1M LINE L1 5263 5401 -783 309 241 26 52 chr11 103402990 103403106 -45380366 + MIR SINE MIR 125 237 -25 338 276 0 0 chr11 103403277 103403364 -45380108 + MIR SINE MIR 171 257 -5 226 333 0 0 chr11 103403893 103403956 -45379516 - tRNA-Ile-ATT tRNA tRNA -4 73 11 315 255 104 0 chr11 103404538 103404644 -45378828 + L2 LINE L2 3197 3313 0 216 0 0 0 chr11 103405042 103405066 -45378406 + (CA)n Simple_repeat Simple_repeat 2 25 0 225 293 41 8 chr11 103405078 103405201 -45378271 + (TATATG)n Simple_repeat Simple_repeat 3 129 0 437 76 15 0 chr11 103405224 103405290 -45378182 + (TG)n Simple_repeat Simple_repeat 1 67 0 237 132 0 0 chr11 103405426 103405464 -45378008 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 1660 210 22 14 chr11 103405575 103405937 -45377535 - MLT1A1 LTR MaLR 0 365 1 347 184 112 31 chr11 103406768 103406866 -45376606 - HAL1 LINE L1 -89 2418 2313 745 305 72 7 chr11 103407015 103407432 -45376040 - L1MC/D LINE L1 -2067 5741 5298 590 149 0 70 chr11 103407618 103407732 -45375740 - FRAM SINE Alu -18 158 53 2666 267 77 14 chr11 103409046 103409813 -45373659 + MER69 DNA AcHobo 1 815 -411 4961 143 27 24 chr11 103409816 103409967 -45373505 - MER4D LTR ERV1 0 903 754 2254 129 19 22 chr11 103409967 103410332 -45373140 - THE1B LTR MaLR 0 364 1 4961 143 27 24 chr11 103410332 103411025 -45372447 - MER4D LTR ERV1 -149 754 56 316 160 0 0 chr11 103411079 103411129 -45372343 + MER4D LTR ERV1 1 50 -822 1184 220 31 57 chr11 103411160 103411546 -45371926 + MER69 DNA AcHobo 2151 2526 0 21 0 0 0 chr11 103412379 103412400 -45371072 + AT_rich Low_complexity Low_complexity 1 21 0 457 288 67 37 chr11 103412567 103412970 -45370502 - L1ME LINE L1 -302 5819 5405 2963 125 5 0 chr11 103413259 103413691 -45369781 - MER57B LTR ERV1 0 434 1 11803 105 107 64 chr11 103413691 103414067 -45369405 - MER57B-int LTR ERV1 0 7537 7179 2052 119 10 0 chr11 103414067 103414360 -45369112 + AluSp SINE Alu 3 298 -15 11803 105 107 64 chr11 103414360 103416122 -45367350 - MER57B-int LTR ERV1 -358 7179 5307 2541 146 60 14 chr11 103416113 103416901 -45366571 - MER57B-int LTR ERV1 -1986 4277 2167 * 1093 98 12 9 chr11 103416877 103417054 -45366418 - MER57B-int LTR ERV1 -3929 2017 1498 * 1606 215 85 6 chr11 103417049 103417403 -45366069 - MER57B-int LTR ERV1 -5166 2371 1990 * 3309 139 43 8 chr11 103417399 103418126 -45365346 - MER57B-int LTR ERV1 -4811 1135 288 * 4080 131 63 3 chr11 103418120 103418755 -45364717 - MER57B-int LTR ERV1 -6862 675 3 2844 127 12 5 chr11 103418761 103419188 -45364284 - MER57B LTR ERV1 -4 430 1 477 293 35 35 chr11 103419191 103419365 -45364107 + MIR SINE MIR 17 190 -72 203 53 18 70 chr11 103419509 103419566 -45363906 + (TTATA)n Simple_repeat Simple_repeat 2 55 0 268 258 106 53 chr11 103419854 103419986 -45363486 + L2 LINE L2 3134 3272 0 241 162 378 0 chr11 103420085 103420159 -45363313 + L1MEc LINE L1 103 204 -6192 1760 266 53 37 chr11 103420181 103420997 -45362475 + L1MEc LINE L1 329 1157 -5239 1821 272 40 31 chr11 103421080 103421831 -45361641 + L1MEc LINE L1 1317 2074 -4322 180 111 0 0 chr11 103421835 103421862 -45361610 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 8266 207 95 12 chr11 103421922 103424230 -45359242 + L1M2 LINE L1 997 3167 -3681 252 231 23 46 chr11 103424367 103424497 -45358975 + G-rich Low_complexity Low_complexity 5 131 0 1637 212 32 142 chr11 103424502 103425290 -45358182 + L1MB1 LINE L1 1214 1914 -4470 1441 18 0 0 chr11 103425298 103425463 -45358009 - L1PA4 LINE L1 -191 5964 5800 983 25 0 0 chr11 103425463 103425579 -45357893 + L1PA4 LINE L1 6035 6152 -3 5202 228 60 27 chr11 103425579 103427763 -45355709 + L1MB1 LINE L1 1999 4354 -2028 2164 149 10 34 chr11 103427811 103427834 -45355638 + L1MB1 LINE L1 4851 4873 -1509 2104 118 0 20 chr11 103427834 103428131 -45355341 + AluSg SINE Alu 1 291 -19 2164 149 10 34 chr11 103428131 103428524 -45354948 + L1MB1 LINE L1 4873 5257 -1125 375 105 20 216 chr11 103428497 103428577 -45354895 + L1MB1 LINE L1 5966 6004 -421 * 387 0 0 0 chr11 103428577 103428620 -45354852 + (CA)n Simple_repeat Simple_repeat 1 43 0 375 105 20 216 chr11 103428620 103428692 -45354780 + L1MB1 LINE L1 6004 6088 -337 352 291 169 14 chr11 103429884 103430097 -45353375 - MIR SINE MIR -13 249 4 42743 35 22 2 chr11 103430173 103436199 -45347273 - L1PA2 LINE L1 -4 6151 1 509 158 11 38 chr11 103436691 103436874 -45346598 + (TA)n Simple_repeat Simple_repeat 2 179 0 306 184 10 19 chr11 103436906 103437009 -45346463 + (TA)n Simple_repeat Simple_repeat 2 103 0 263 127 0 18 chr11 103437211 103437251 -45346221 + (TA)n Simple_repeat Simple_repeat 2 42 -13 16521 132 29 7 chr11 103437251 103439918 -45343554 - Tigger4(Zombi) DNA MER2_type -3 2728 5 263 127 0 18 chr11 103439918 103439932 -45343540 + (TA)n Simple_repeat Simple_repeat 42 55 0 186 167 0 0 chr11 103440307 103440343 -45343129 + (TG)n Simple_repeat Simple_repeat 1 36 0 1738 126 34 0 chr11 103440343 103440606 -45342866 - AluJb SINE Alu -27 285 14 1226 287 79 40 chr11 103440906 103441795 -45341677 + L1MEd LINE L1 411 1443 -1047 421 280 60 24 chr11 103442316 103442484 -45340988 + MIR SINE MIR 86 259 -3 815 192 60 18 chr11 103442583 103442608 -45340864 + MER5A DNA MER1_type 16 38 -151 2985 116 66 8 chr11 103442608 103443091 -45340381 - MER9 LTR ERVK 0 511 1 815 192 60 18 chr11 103443091 103443232 -45340240 + MER5A DNA MER1_type 38 189 0 889 228 92 9 chr11 103443596 103443824 -45339648 + MIR SINE MIR 16 262 0 1739 256 117 33 chr11 103445233 103446011 -45337461 + L1ME3A LINE L1 5309 6151 -19 673 230 93 0 chr11 103446016 103446177 -45337295 + MER20 DNA MER1_type 4 179 -40 208 319 117 0 chr11 103446482 103446576 -45336896 + L2 LINE L2 3209 3313 0 1731 226 64 83 chr11 103447129 103447645 -45335827 + MLT1D LTR MaLR 1 496 -9 1884 196 48 3 chr11 103448615 103448992 -45334480 + MSTD LTR MaLR 3 396 0 21 0 0 0 chr11 103450091 103450112 -45333360 + AT_rich Low_complexity Low_complexity 1 21 0 509 282 98 70 chr11 103451398 103451756 -45331716 - HAL1 LINE L1 -1288 1219 852 23 0 0 0 chr11 103451941 103451964 -45331508 + AT_rich Low_complexity Low_complexity 1 23 0 417 301 68 41 chr11 103452450 103452596 -45330876 - MIR SINE MIR -109 153 4 24 67 0 0 chr11 103453066 103453111 -45330361 + AT_rich Low_complexity Low_complexity 1 45 0 758 206 79 115 chr11 103453850 103454330 -45329142 + LTR37B LTR ERV1 6 468 0 367 236 242 39 chr11 103454343 103454521 -45328951 - MIR SINE MIR -2 260 47 241 331 79 8 chr11 103454733 103454862 -45328610 - MIR SINE MIR -62 146 18 184 311 90 0 chr11 103455605 103455706 -45327766 + MIR SINE MIR 88 203 -5 403 349 52 18 chr11 103455889 103456118 -45327354 - MIR SINE MIR 0 262 26 632 353 63 37 chr11 103456255 103456324 -45327148 - L2 LINE L2 -20 3252 3186 228 67 0 0 chr11 103456324 103456354 -45327118 + (CA)n Simple_repeat Simple_repeat 1 30 0 632 353 63 37 chr11 103456354 103456632 -45326840 - L2 LINE L2 -86 3186 2896 25 51 0 0 chr11 103457090 103457129 -45326343 + AT_rich Low_complexity Low_complexity 1 39 0 352 237 10 31 chr11 103457344 103457441 -45326031 + L1MC4 LINE L1 6609 6703 -1339 248 128 0 21 chr11 103457441 103457456 -45326016 + (TA)n Simple_repeat Simple_repeat 2 16 -31 1957 109 51 0 chr11 103457456 103457730 -45325742 - AluSc SINE Alu -21 288 1 248 128 0 21 chr11 103457730 103457761 -45325711 + (TA)n Simple_repeat Simple_repeat 16 47 0 2397 93 3 0 chr11 103457789 103458099 -45325373 + AluSp SINE Alu 1 311 -2 1874 282 44 17 chr11 103458106 103458680 -45324792 + L1MEc LINE L1 133 721 -5675 448 283 62 20 chr11 103458673 103458917 -45324555 + L1MEc LINE L1 1219 1472 -4924 * 1260 177 9 30 chr11 103458919 103459151 -45324321 - MER45B DNA AcHobo -732 308 82 548 249 28 66 chr11 103459161 103459342 -45324130 + L2 LINE L2 2581 2754 -560 215 338 180 14 chr11 103459357 103459496 -45323976 + L2 LINE L2 2879 3040 -273 473 285 21 107 chr11 103459952 103460215 -45323257 - MIR SINE MIR -15 247 14 22 0 0 0 chr11 103462454 103462476 -45320996 + AT_rich Low_complexity Low_complexity 1 22 0 354 261 85 20 chr11 103463662 103463959 -45319513 + LTR37B LTR ERV1 1 409 -59 4442 170 22 29 chr11 103463980 103464369 -45319103 - L1MB1 LINE L1 -5 6163 5773 276 30 0 0 chr11 103464369 103464402 -45319070 + (CA)n Simple_repeat Simple_repeat 2 34 0 4442 170 22 29 chr11 103464402 103464923 -45318549 - L1MB1 LINE L1 -395 5773 5259 12280 206 40 13 chr11 103465034 103465302 -45318170 - L1MB1 LINE L1 -129 6275 6016 276 30 0 0 chr11 103465302 103465335 -45318137 + (CA)n Simple_repeat Simple_repeat 2 34 0 12280 206 40 13 chr11 103465335 103469019 -45314453 - L1MB1 LINE L1 -388 6016 2207 2378 263 52 15 chr11 103469020 103470308 -45313164 + L1 LINE L1 2098 3385 -4182 422 300 150 62 chr11 103470727 103471000 -45312472 + L2 LINE L2 2974 3270 -2 262 282 17 43 chr11 103471562 103471679 -45311793 - MIR SINE MIR -73 189 76 3502 183 62 39 chr11 103472995 103473670 -45309802 - L1MB5 LINE L1 -9 6165 5506 2336 103 7 0 chr11 103473670 103473971 -45309501 - AluSg SINE Alu -7 303 1 3502 183 62 39 chr11 103473971 103474593 -45308879 - L1MB5 LINE L1 -668 5506 4838 278 240 132 8 chr11 103474570 103474699 -45308773 + L1 LINE L1 5824 5968 -1597 * 3905 131 22 3 chr11 103474713 103475340 -45308132 - L1PA15 LINE L1 -2 6163 5525 284 327 35 26 chr11 103475392 103475505 -45307967 - MIR3 SINE MIR -91 117 4 554 358 29 17 chr11 103476093 103476333 -45307139 + MIR SINE MIR 20 262 0 291 317 110 7 chr11 103477150 103477295 -45306177 + L2 LINE L2 3103 3262 -10 406 317 50 8 chr11 103477746 103477866 -45305606 + L2 LINE L2 3148 3272 0 343 202 67 10 chr11 103479168 103479272 -45304200 - MLT1J LTR MaLR -4 507 398 321 310 35 20 chr11 103480135 103480332 -45303140 + LTR33 LTR ERVL 304 503 -18 348 303 148 72 chr11 103480338 103480602 -45302870 - L2 LINE L2 -92 3180 2897 5459 144 28 7 chr11 103480608 103481950 -45301522 + L1MA8 LINE L1 4855 6226 -65 213 178 0 0 chr11 103481957 103482002 -45301470 + (CATATA)n Simple_repeat Simple_repeat 3 47 0 219 209 70 105 chr11 103482663 103482749 -45300723 + MIR3 SINE MIR 115 197 -11 1884 148 11 36 chr11 103482902 103483260 -45300212 + MLT2D LTR ERVL 2 350 -64 348 208 115 10 chr11 103484021 103484117 -45299355 + MER103 DNA DNA 3 108 -58 326 285 32 86 chr11 103484276 103484462 -45299010 + MIR3 SINE MIR 33 208 0 227 194 65 16 chr11 103484589 103484651 -45298821 - MIR SINE MIR -73 189 125 * 264 269 134 47 chr11 103484599 103484852 -45298620 + L2 LINE L2 2573 2847 -467 2133 166 63 37 chr11 103485179 103485642 -45297830 - MLT1D LTR MaLR -2 503 29 242 303 143 8 chr11 103485894 103486013 -45297459 - MIR SINE MIR -116 146 12 1056 154 0 25 chr11 103486743 103486905 -45296567 - FRAM SINE Alu -19 157 1 339 65 0 0 chr11 103489451 103489497 -45293975 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1843 161 0 0 chr11 103490795 103491117 -45292355 + L1MB2 LINE L1 5822 6143 -28 1040 203 142 30 chr11 103491156 103491486 -45291986 + MLT1E2 LTR MaLR 218 584 -42 1224 326 60 50 chr11 103491621 103492531 -45290941 + L2 LINE L2 1898 2817 -497 312 73 18 0 chr11 103492720 103492775 -45290697 + L1PA16 LINE L1 5277 5332 -834 582 136 11 0 chr11 103492775 103492863 -45290609 + AluS SINE Alu 1 89 -224 4947 93 41 26 chr11 103492863 103493667 -45289805 + L1PA16 LINE L1 5341 6156 -10 21 0 0 0 chr11 103493667 103493688 -45289784 + AT_rich Low_complexity Low_complexity 1 21 0 875 298 4 8 chr11 103494339 103494581 -45288891 + MIR SINE MIR 21 261 -1 23 0 0 0 chr11 103495069 103495092 -45288380 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr11 103495377 103495400 -45288072 + (TTATA)n Simple_repeat Simple_repeat 3 25 0 1835 162 91 40 chr11 103496104 103496500 -45286972 - MER21A LTR ERV1 -19 912 497 1629 167 45 42 chr11 103496489 103496825 -45286647 - MER21A LTR ERV1 -571 360 24 * 513 0 0 0 chr11 103496825 103496882 -45286590 + (TG)n Simple_repeat Simple_repeat 2 58 0 328 331 54 36 chr11 103497363 103497529 -45285943 - L2 LINE L2 -215 3057 2889 300 330 17 35 chr11 103497631 103497746 -45285726 + MER91A DNA MER1_type 59 171 -25 245 333 53 0 chr11 103497772 103497847 -45285625 + MER91A DNA MER1_type 117 195 -1 677 323 142 28 chr11 103497855 103498319 -45285153 - L2 LINE L2 -495 2819 2303 213 262 0 16 chr11 103500014 103500075 -45283397 + CT-rich Low_complexity Low_complexity 6 65 0 1562 222 59 74 chr11 103500589 103501115 -45282357 + LTR40a LTR ERVL 2 519 0 1054 126 40 0 chr11 103501587 103501738 -45281734 - AluY SINE Alu -13 298 142 502 157 36 0 chr11 103501738 103501821 -45281651 + AluSx SINE Alu 50 135 -178 2182 86 0 10 chr11 103501883 103502174 -45281298 + AluY SINE Alu 1 288 -23 194 0 39 0 chr11 103502177 103502203 -45281269 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1128 132 6 6 chr11 103502203 103502370 -45281102 + AluSx SINE Alu 133 299 -13 293 258 175 10 chr11 103506528 103506625 -45276847 - MIR SINE MIR -148 114 2 702 301 5 10 chr11 103506942 103507151 -45276321 + MER63A DNA MER1_type 1 208 -2 665 276 44 15 chr11 103507237 103507440 -45276032 + MIR SINE MIR 8 216 -46 415 294 169 24 chr11 103508247 103508543 -45274929 - L2 LINE L2 -70 3243 2905 395 286 12 47 chr11 103509420 103509591 -45273881 + L2 LINE L2 3108 3272 -41 433 346 78 5 chr11 103509795 103510000 -45273472 + MIR SINE MIR 18 237 -25 406 286 79 32 chr11 103512749 103512938 -45270534 + MIR SINE MIR 8 205 -57 2164 85 3 0 chr11 103514365 103514659 -45268813 - L1PA8 LINE L1 -9 6163 5869 199 239 22 0 chr11 103514727 103514773 -45268699 + L3b LINE CR1 1434 1480 -103 290 263 38 12 chr11 103514820 103514900 -45268572 - MIR SINE MIR -65 143 62 346 308 28 63 chr11 103515148 103515291 -45268181 - MIR SINE MIR -108 154 17 345 318 8 23 chr11 103516246 103516375 -45267097 + L2 LINE L2 3134 3260 -12 348 322 17 26 chr11 103516477 103516592 -45266880 - L2 LINE L2 -1 3312 3199 25 0 0 0 chr11 103516714 103516739 -45266733 + AT_rich Low_complexity Low_complexity 1 25 0 2177 107 3 35 chr11 103516740 103517057 -45266415 + AluSx SINE Alu 1 307 -5 1143 137 6 0 chr11 103518616 103518784 -45264688 - AluSg/x SINE Alu -9 301 133 2368 28 0 18 chr11 103519638 103519922 -45263550 + AluY SINE Alu 1 279 -32 290 232 58 29 chr11 103520071 103520209 -45263263 + (CCCCAA)n Simple_repeat Simple_repeat 1 142 0 841 304 137 2 chr11 103520716 103521117 -45262355 + MLT1J LTR MaLR 57 511 0 664 228 61 9 chr11 103521536 103521764 -45261708 - MER20B DNA MER1_type -1 782 543 294 308 118 13 chr11 103522664 103522852 -45260620 - MIR3 SINE MIR -45 163 6 1000 318 138 14 chr11 103523397 103524054 -45259418 - L2 LINE L2 0 3313 2552 212 296 0 12 chr11 103525845 103525926 -45257546 + T-rich Low_complexity Low_complexity 4 83 0 2221 98 3 25 chr11 103526774 103527090 -45256382 + AluSx SINE Alu 2 310 -2 506 318 78 12 chr11 103528247 103528492 -45254980 + MIR SINE MIR 2 262 0 250 295 11 49 chr11 103529351 103529534 -45253938 + HAL1 LINE L1 177 352 -2155 411 342 160 55 chr11 103529718 103530244 -45253228 + HAL1 LINE L1 96 676 -1831 396 0 0 0 chr11 103530259 103530303 -45253169 + (TATG)n Simple_repeat Simple_repeat 2 45 0 1858 160 0 0 chr11 103530309 103530584 -45252888 - AluSx SINE Alu -37 275 1 1337 282 132 25 chr11 103530595 103531117 -45252355 - MLT1G LTR MaLR -12 578 1 244 176 336 8 chr11 103531395 103531514 -45251958 + L1MC5 LINE L1 7543 7700 -261 556 236 28 28 chr11 103531697 103531913 -45251559 + L1MC5 LINE L1 7698 7913 -48 324 0 0 0 chr11 103531937 103531973 -45251499 + (CA)n Simple_repeat Simple_repeat 2 37 0 296 341 152 18 chr11 103532092 103532256 -45251216 - MIR SINE MIR -51 211 26 275 369 76 19 chr11 103532896 103533053 -45250419 + L2 LINE L2 3107 3272 0 198 0 0 0 chr11 103533096 103533118 -45250354 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 2052 288 56 48 chr11 103533861 103535461 -45248011 + L1ME1 LINE L1 56 1669 -4727 460 235 12 24 chr11 103535452 103535618 -45247854 + L1ME1 LINE L1 2204 2367 -4029 * 5288 213 67 52 chr11 103535759 103536303 -45247169 + L1ME1 LINE L1 3159 3693 -2542 1027 198 57 118 chr11 103536303 103536692 -45246780 - MLT1A1 LTR MaLR 0 365 1 5288 213 67 52 chr11 103536692 103538478 -45244994 + L1ME1 LINE L1 3693 5546 -689 2553 49 0 3 chr11 103538478 103538783 -45244689 + AluY SINE Alu 1 304 -7 5288 213 67 52 chr11 103538783 103539475 -45243997 + L1ME1 LINE L1 5546 6226 -9 1958 115 11 3 chr11 103539919 103540206 -45243266 + AluSp SINE Alu 1 289 -24 448 16 0 32 chr11 103540605 103540668 -45242804 + (TA)n Simple_repeat Simple_repeat 2 62 0 1677 162 3 25 chr11 103540729 103541043 -45242429 - Tigger3(Golem) DNA MER2_type -2 3027 2721 449 219 0 0 chr11 103541041 103541123 -45242349 - Tigger3(Golem) DNA MER2_type -2947 82 1 * 460 252 7 82 chr11 103541156 103541303 -45242169 - MIR SINE MIR -109 153 18 239 321 0 49 chr11 103541474 103541555 -45241917 - L2 LINE L2 -5 3308 3232 553 359 68 0 chr11 103542445 103542682 -45240790 - MIR SINE MIR -7 255 3 380 348 22 0 chr11 103543214 103543352 -45240120 + MIR SINE MIR 3 143 -119 654 239 24 78 chr11 103544900 103545105 -45238367 + L2 LINE L2 3114 3307 -6 265 335 33 25 chr11 103545820 103546000 -45237472 - MIR SINE MIR -67 195 16 839 141 17 11 chr11 103546520 103546697 -45236775 + CT-rich Low_complexity Low_complexity 3 180 0 251 65 0 0 chr11 103546697 103546728 -45236744 + (TC)n Simple_repeat Simple_repeat 2 32 0 888 294 84 25 chr11 103546891 103547378 -45236094 + LTR33A LTR ERVL 8 523 0 503 167 0 46 chr11 103547585 103547693 -45235779 - L1MC1 LINE L1 0 6333 6231 491 136 0 11 chr11 103548375 103548463 -45235009 + (TTCC)n Simple_repeat Simple_repeat 4 90 0 851 285 84 38 chr11 103548463 103548831 -45234641 - L2 LINE L2 -5 3308 2924 1724 215 110 21 chr11 103548831 103549357 -45234115 + L1ME2 LINE L1 5584 6156 -8 189 0 0 0 chr11 103549359 103549380 -45234092 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1264 257 180 19 chr11 103549382 103550005 -45233467 - L2 LINE L2 -396 2918 2140 1756 154 18 44 chr11 103551621 103552004 -45231468 - THE1C LTR MaLR 0 375 3 285 280 0 0 chr11 103552305 103552380 -45231092 + (TA)n Simple_repeat Simple_repeat 1 75 0 247 303 92 18 chr11 103552396 103552505 -45230967 + MIR SINE MIR 23 139 -123 441 319 71 0 chr11 103552735 103552904 -45230568 - MIR SINE MIR -79 183 3 26 50 0 0 chr11 103554564 103554604 -45228868 + AT_rich Low_complexity Low_complexity 1 40 0 229 356 61 9 chr11 103554646 103554761 -45228711 + MIR SINE MIR 23 143 -119 30 0 0 0 chr11 103555025 103555055 -45228417 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr11 103555682 103555706 -45227766 + AT_rich Low_complexity Low_complexity 1 24 0 283 295 39 0 chr11 103556311 103556389 -45227083 - MIR SINE MIR -72 190 110 335 306 69 28 chr11 103556650 103556794 -45226678 + L2 LINE L2 3163 3312 -1 1228 162 33 116 chr11 103556801 103557019 -45226453 - L1MC3 LINE L1 -2 7783 7611 2043 87 13 24 chr11 103557019 103557317 -45226155 - AluY SINE Alu -16 295 1 1228 162 33 116 chr11 103557317 103557494 -45225978 - L1MC3 LINE L1 -174 7611 7421 393 261 49 0 chr11 103557494 103557607 -45225865 + MSTC LTR MaLR 1 124 -241 207 191 0 0 chr11 103557639 103557702 -45225770 + C-rich Low_complexity Low_complexity 1 63 0 2374 79 0 22 chr11 103557846 103558164 -45225308 - AluY SINE Alu 0 311 1 189 0 0 0 chr11 103558165 103558186 -45225286 + (TTTTTG)n Simple_repeat Simple_repeat 5 25 0 624 174 65 39 chr11 103558186 103558341 -45225131 - L1MC3 LINE L1 -206 7579 7421 1301 200 168 3 chr11 103558341 103558681 -45224791 + MSTD LTR MaLR 1 396 0 9225 186 25 11 chr11 103558681 103560649 -45222823 - L1MC3 LINE L1 -360 7425 5430 316 233 57 52 chr11 103560711 103560829 -45222643 - MIR3 SINE MIR -38 170 52 627 170 0 0 chr11 103562342 103562495 -45220977 + G-rich Low_complexity Low_complexity 1 153 0 320 319 174 8 chr11 103563779 103564014 -45219458 + L1M2 LINE L1 675 948 -5901 742 137 129 0 chr11 103566674 103566813 -45216659 + FRAM SINE Alu 2 158 -8 21 0 0 0 chr11 103567811 103567832 -45215640 + AT_rich Low_complexity Low_complexity 1 21 0 651 191 79 20 chr11 103567960 103568112 -45215360 - MIR SINE MIR -35 227 67 289 284 30 0 chr11 103568226 103568293 -45215179 + Charlie1 DNA MER1_type 3 71 -2690 701 203 31 0 chr11 103568306 103568469 -45215003 + Charlie1 DNA MER1_type 2361 2528 -233 231 75 25 0 chr11 103568462 103568502 -45214970 + Charlie1 DNA MER1_type 2711 2751 -10 * 294 274 99 43 chr11 103568654 103568951 -45214521 - L1ME LINE L1 -523 5647 5318 286 308 84 5 chr11 103569065 103569348 -45214124 - L1ME LINE L1 -1050 5096 4784 432 254 196 14 chr11 103569408 103569617 -45213855 - L1ME LINE L1 -1464 4682 4436 542 262 106 11 chr11 103569793 103570075 -45213397 - L1ME LINE L1 -1955 4191 3883 1288 220 118 121 chr11 103570963 103571510 -45211962 - MER21B LTR ERV1 -105 758 212 1954 131 3 7 chr11 103571510 103571792 -45211680 - AluSx SINE Alu -31 281 1 1288 220 118 121 chr11 103571792 103572004 -45211468 - MER21B LTR ERV1 -651 212 1 22 56 0 0 chr11 103572530 103572566 -45210906 + AT_rich Low_complexity Low_complexity 1 36 0 224 386 112 26 chr11 103573851 103574343 -45209129 + L2 LINE L2 2381 2914 -400 1561 248 68 30 chr11 103574345 103574708 -45208764 - MLT1E2 LTR MaLR 0 626 239 2130 88 33 26 chr11 103574708 103575014 -45208458 - AluSc SINE Alu -1 308 1 1561 248 68 30 chr11 103575014 103575121 -45208351 - MLT1E2 LTR MaLR -387 239 138 180 77 0 0 chr11 103575767 103575793 -45207679 + (A)n Simple_repeat Simple_repeat 1 26 0 2246 101 3 3 chr11 103576579 103576875 -45206597 - AluSc SINE Alu -12 297 2 1095 193 67 60 chr11 103576884 103577184 -45206288 - Charlie1a DNA MER1_type -1153 302 1 34239 78 13 3 chr11 103580586 103585227 -45198245 + L1PA5 LINE L1 11 4697 -1449 4593 83 14 16 chr11 103585232 103585921 -45197551 + L1PA5 LINE L1 5467 6154 0 1132 104 5 16 chr11 103586760 103586952 -45196520 + L1PA5 LINE L1 5965 6154 0 27 92 0 0 chr11 103587561 103587637 -45195835 + AT_rich Low_complexity Low_complexity 1 76 0 2037 86 19 68 chr11 103587774 103588098 -45195374 - AluSx SINE Alu -4 308 1 1650 130 52 37 chr11 103589437 103589707 -45193765 - AluSx SINE Alu -38 274 1 2387 86 3 0 chr11 103589716 103590018 -45193454 - AluSp SINE Alu -10 303 1 1828 180 14 17 chr11 103590179 103590524 -45192948 + MER2 DNA MER2_type 1 344 0 712 181 8 0 chr11 103591026 103591159 -45192313 + AluJo SINE Alu 1 134 -178 1980 162 21 26 chr11 103591392 103591769 -45191703 - THE1C LTR MaLR 0 375 1 1785 112 8 0 chr11 103592141 103592383 -45191089 + AluSx SINE Alu 53 296 -16 2279 82 3 0 chr11 103592444 103592737 -45190735 + AluY SINE Alu 1 294 -17 2296 81 7 0 chr11 103593488 103593784 -45189688 + AluSp SINE Alu 1 298 -15 22 35 0 0 chr11 103595480 103595509 -45187963 + AT_rich Low_complexity Low_complexity 1 29 0 1349 117 79 5 chr11 103595739 103595953 -45187519 + AluSq SINE Alu 66 295 -18 214 211 0 70 chr11 103596351 103596408 -45187064 + MER5B DNA MER1_type 1 53 -125 216 0 0 0 chr11 103596555 103596579 -45186893 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 207 284 129 9 chr11 103597423 103597539 -45185933 + MIR SINE MIR 88 217 -45 21 0 0 0 chr11 103598579 103598600 -45184872 + AT_rich Low_complexity Low_complexity 1 21 0 4718 122 35 15 chr11 103598671 103599448 -45184024 + Tigger2 DNA MER2_type 1 792 -1926 1318 221 116 121 chr11 103599901 103600113 -45183359 + MER21B LTR ERV1 1 213 -650 1954 131 3 7 chr11 103600113 103600395 -45183077 + AluSx SINE Alu 1 281 -31 1318 221 116 121 chr11 103600395 103600944 -45182528 + MER21B LTR ERV1 213 758 -105 626 259 106 11 chr11 103601832 103602114 -45181358 + L1M4 LINE L1 3883 4191 -1955 273 248 193 13 chr11 103602261 103602499 -45180973 + L1M4 LINE L1 4402 4682 -1464 347 312 109 3 chr11 103602559 103602844 -45180628 + L1M4 LINE L1 4784 5098 -1048 326 274 99 43 chr11 103602956 103603253 -45180219 + L1P4 LINE L1 5318 5647 -523 244 75 25 0 chr11 103603405 103603445 -45180027 - Charlie1 DNA MER1_type -10 2751 2711 * 750 203 31 0 chr11 103603438 103603601 -45179871 - Charlie1 DNA MER1_type -233 2528 2361 313 284 30 0 chr11 103603614 103603681 -45179791 - Charlie1 DNA MER1_type -2690 71 3 652 191 79 20 chr11 103603795 103603947 -45179525 + MIR SINE MIR 67 227 -35 21 0 0 0 chr11 103604077 103604098 -45179374 + AT_rich Low_complexity Low_complexity 1 21 0 727 137 129 0 chr11 103605097 103605236 -45178236 - FRAM SINE Alu -8 158 2 224 386 112 26 chr11 103606665 103607157 -45176315 + L2 LINE L2 2381 2914 -400 1555 248 68 32 chr11 103607159 103607523 -45175949 - MLT1E2 LTR MaLR 0 626 240 2148 92 33 20 chr11 103607523 103607828 -45175644 - AluSc SINE Alu 0 309 1 1555 248 68 32 chr11 103607828 103607935 -45175537 - MLT1E2 LTR MaLR -386 240 138 180 77 0 0 chr11 103608582 103608608 -45174864 + (A)n Simple_repeat Simple_repeat 1 26 0 2146 80 4 7 chr11 103609394 103609669 -45173803 - AluSx SINE Alu -12 300 27 2115 123 115 34 chr11 103609711 103610152 -45173320 + Tigger2 DNA MER2_type 2125 2651 -67 1493 91 67 35 chr11 103610152 103610406 -45173066 + L1PA11 LINE L1 5913 6174 0 2115 123 115 34 chr11 103610406 103610480 -45172992 + Tigger2 DNA MER2_type 2651 2718 0 351 189 123 19 chr11 103610594 103610700 -45172772 - L1M4 LINE L1 -2282 3864 3748 390 291 134 0 chr11 103610751 103610885 -45172587 - MER5A DNA MER1_type -2 187 36 1257 170 197 20 chr11 103612079 103612373 -45171099 - MER7A DNA MER2_type 0 346 3 23 33 0 0 chr11 103612540 103612570 -45170902 + AT_rich Low_complexity Low_complexity 1 30 0 2087 87 72 0 chr11 103612579 103612856 -45170616 + AluY SINE Alu 1 297 -14 412 239 47 157 chr11 103613873 103614128 -45169344 - MIR SINE MIR -16 246 20 30 45 0 0 chr11 103614604 103614648 -45168824 + AT_rich Low_complexity Low_complexity 1 44 0 23 54 0 0 chr11 103615363 103615400 -45168072 + AT_rich Low_complexity Low_complexity 1 37 0 205 245 194 10 chr11 103617319 103617417 -45166055 - L2 LINE L2 -551 2763 2648 193 214 170 80 chr11 103619703 103619815 -45163657 - MIR SINE MIR -71 137 16 2342 145 152 7 chr11 103620286 103620824 -45162648 + L1MB7 LINE L1 5569 6184 0 213 316 31 82 chr11 103620909 103621007 -45162465 - L2 LINE L2 -21 3251 3159 306 278 31 21 chr11 103621087 103621184 -45162288 - MIR SINE MIR -160 102 5 374 61 212 0 chr11 103622458 103622524 -45160948 - MADE1 DNA Mariner 0 80 1 618 103 23 0 chr11 103623835 103623922 -45159550 - 5S rRNA rRNA -31 90 2 384 247 34 0 chr11 103623955 103624044 -45159428 - MARNA DNA Mariner -31 555 464 306 252 63 31 chr11 103623965 103624092 -45159380 + MARNA DNA Mariner 43 173 -413 * 251 289 139 6 chr11 103624085 103624251 -45159221 - MARNA DNA Mariner -235 351 164 * 22 56 0 0 chr11 103624856 103624892 -45158580 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr11 103625564 103625588 -45157884 + AT_rich Low_complexity Low_complexity 1 24 0 1513 204 18 0 chr11 103625612 103625892 -45157580 + AluJo SINE Alu 1 285 -27 4626 192 108 43 chr11 103626404 103627767 -45155705 + Charlie1a DNA MER1_type 1 1451 -4 997 194 142 9 chr11 103628151 103628362 -45155110 - MER8 DNA MER2_type 0 239 1 189 0 0 0 chr11 103629683 103629704 -45153768 + (A)n Simple_repeat Simple_repeat 1 21 0 764 269 101 27 chr11 103630066 103630363 -45153109 - L2 LINE L2 0 3313 2995 229 321 36 0 chr11 103631219 103631303 -45152169 - L2 LINE L2 -217 3055 2969 184 310 32 77 chr11 103631826 103631981 -45151491 + MIR SINE MIR 82 229 -33 452 155 24 0 chr11 103632775 103632859 -45150613 + L1MB7 LINE L1 6046 6131 -53 465 276 97 27 chr11 103633227 103633412 -45150060 - MIR SINE MIR -64 198 1 182 324 84 0 chr11 103634771 103634842 -45148630 - L2 LINE L2 -3 3310 3234 1936 106 67 7 chr11 103634857 103635139 -45148333 - AluSc SINE Alu -10 299 1 2104 93 7 0 chr11 103635150 103635429 -45148043 - AluSq SINE Alu -3 310 30 387 246 144 24 chr11 103635911 103636078 -45147394 - MIR SINE MIR -11 251 65 1887 128 15 4 chr11 103636549 103636822 -45146650 + AluSx SINE Alu 1 276 -36 185 0 40 0 chr11 103636830 103636855 -45146617 + (TA)n Simple_repeat Simple_repeat 1 26 0 182 88 0 29 chr11 103636911 103636945 -45146527 + (TA)n Simple_repeat Simple_repeat 2 34 0 556 332 179 8 chr11 103637000 103637358 -45146114 + L2 LINE L2 2435 2853 -461 230 303 81 56 chr11 103637405 103637603 -45145869 + L2 LINE L2 3111 3313 0 1792 164 0 7 chr11 103638261 103638553 -45144919 - AluJb SINE Alu -13 299 10 2070 126 3 7 chr11 103638602 103638904 -45144568 - AluJb SINE Alu -9 303 3 1835 166 13 0 chr11 103639046 103639348 -45144124 - AluJb SINE Alu -6 306 1 584 198 0 0 chr11 103639697 103639813 -45143659 + L1MB7 LINE L1 6050 6165 -19 304 288 54 0 chr11 103639815 103639926 -45143546 + L1MC4a LINE L1 5814 5930 -1878 230 289 137 26 chr11 103641774 103641964 -45141508 + MIR SINE MIR 33 243 -19 485 252 56 28 chr11 103642091 103642234 -45141238 - MIR3 SINE MIR -2 206 60 391 217 0 0 chr11 103643225 103643294 -45140178 + AluJ/FLAM SINE Alu 1 69 -233 400 109 0 32 chr11 103643393 103643481 -45139991 + FLAM SINE Alu 76 126 -7 2084 128 3 3 chr11 103644017 103644313 -45139159 + AluSx SINE Alu 1 296 -16 2288 71 34 10 chr11 103644673 103644968 -45138504 + AluY SINE Alu 1 302 -9 279 312 0 55 chr11 103645051 103645160 -45138312 + MIR SINE MIR 106 208 -54 342 0 0 0 chr11 103645199 103645237 -45138235 + (TTA)n Simple_repeat Simple_repeat 2 39 0 2043 132 0 0 chr11 103645239 103645520 -45137952 - AluSx SINE Alu -31 281 1 235 333 13 26 chr11 103646575 103646653 -45136819 - L3 LINE CR1 -454 1123 1047 739 328 59 40 chr11 103647731 103648152 -45135320 - L2 LINE L2 -814 2500 2072 218 262 48 60 chr11 103648237 103648321 -45135151 + MIR SINE MIR 68 150 -112 380 272 73 82 chr11 103649656 103649888 -45133584 - MIR SINE MIR -10 252 23 201 243 0 0 chr11 103650521 103650558 -45132914 + polypurine Low_complexity Low_complexity 3 39 0 862 264 19 0 chr11 103650615 103650827 -45132645 + MIR SINE MIR 47 262 0 1330 213 3 40 chr11 103651779 103652103 -45131369 + AluJb SINE Alu 1 312 0 664 303 104 0 chr11 103653372 103653603 -45129869 - MIR SINE MIR 0 262 8 1889 137 7 33 chr11 103653800 103654100 -45129372 - AluJb SINE Alu -19 293 2 2234 92 3 19 chr11 103654372 103654688 -45128784 - AluSx SINE Alu -1 311 1 371 256 110 12 chr11 103655427 103655591 -45127881 - HAL1 LINE L1 -895 1612 1433 1200 161 47 51 chr11 103656067 103656303 -45127169 + AluJo SINE Alu 61 295 -17 417 231 174 12 chr11 103656395 103656637 -45126835 + L1MC5 LINE L1 7546 7826 -135 397 286 67 71 chr11 103656681 103656950 -45126522 - MLT1H LTR MaLR -245 304 9 2337 101 3 0 chr11 103658765 103659073 -45124399 - AluSp SINE Alu -4 309 1 975 245 239 62 chr11 103660192 103660262 -45123210 - L2 LINE L2 -502 2812 2756 1796 191 28 8 chr11 103660262 103660617 -45122855 + MLT1A1 LTR MaLR 1 362 -3 1165 161 4 52 chr11 103660617 103660847 -45122625 - MER20 DNA MER1_type 0 219 1 975 245 239 62 chr11 103660847 103661433 -45122039 - L2 LINE L2 -557 2757 2039 247 317 178 0 chr11 103661606 103661707 -45121765 + L2 LINE L2 3138 3256 -16 23 78 0 0 chr11 103662115 103662166 -45121306 + AT_rich Low_complexity Low_complexity 1 51 0 394 213 47 10 chr11 103662193 103662314 -45121158 - MIR SINE MIR -36 172 45 1984 225 157 24 chr11 103662684 103663444 -45120028 - L1MC5 LINE L1 -47 7914 7054 851 200 46 0 chr11 103663458 103663633 -45119839 + MER5A DNA MER1_type 4 186 -3 2113 175 40 34 chr11 103664031 103664529 -45118943 + MLT1D LTR MaLR 5 505 0 34 0 0 0 chr11 103666060 103666094 -45117378 + AT_rich Low_complexity Low_complexity 1 34 0 232 146 73 0 chr11 103669280 103669321 -45114151 + L2 LINE L2 3213 3256 -16 325 314 91 16 chr11 103672659 103672780 -45110692 + L2 LINE L2 3139 3268 -4 460 310 125 0 chr11 103673538 103673722 -45109750 - MIR SINE MIR -19 243 37 508 173 181 8 chr11 103676314 103676441 -45107031 + MIR SINE MIR 84 232 -30 1292 211 0 16 chr11 103677839 103678081 -45105391 - MER8 DNA MER2_type 0 239 2 216 97 0 0 chr11 103678667 103678698 -45104774 + (ATGGTG)n Simple_repeat Simple_repeat 1 31 0 1829 204 81 104 chr11 103679270 103679588 -45103884 - MER82 DNA MER2_type -7 646 322 2901 117 2 0 chr11 103679588 103680014 -45103458 + L1PA13 LINE L1 5718 6144 -19 1829 204 81 104 chr11 103680014 103680147 -45103325 - MER82 DNA MER2_type -331 322 187 207 0 0 0 chr11 103680147 103680170 -45103302 + (CA)n Simple_repeat Simple_repeat 2 24 0 2415 68 14 0 chr11 103680171 103680464 -45103008 - AluY SINE Alu -14 297 1 1829 204 81 104 chr11 103680464 103680603 -45102869 - MER82 DNA MER2_type -465 188 67 1354 205 65 3 chr11 103680613 103680906 -45102566 + MER44D DNA MER2_type 29 609 0 2266 67 0 23 chr11 103682817 103683116 -45100356 - AluY SINE Alu -18 293 2 335 304 29 0 chr11 103684596 103684698 -45098774 + MIR SINE MIR 100 204 -58 3255 129 175 118 chr11 103685394 103685755 -45097717 + L1MC3 LINE L1 6692 7031 -754 300 333 0 0 chr11 103685755 103685851 -45097621 + MLT1A1 LTR MaLR 29 124 -443 3255 129 175 118 chr11 103685851 103686418 -45097054 + L1MC3 LINE L1 7031 7773 -12 946 231 115 152 chr11 103686418 103687177 -45096295 + Charlie7 DNA MER1_type 112 842 -1770 487 178 47 0 chr11 103687254 103687361 -45096111 + Charlie7 DNA MER1_type 1215 1326 -1286 573 163 5 23 chr11 103687369 103687482 -45095990 + MLT1A1 LTR MaLR 228 311 -54 820 266 14 0 chr11 103687495 103687713 -45095759 + Charlie7 DNA MER1_type 1308 1528 -1084 711 285 114 4 chr11 103687715 103687943 -45095529 + MIR SINE MIR 10 262 0 682 220 27 7 chr11 103687952 103688102 -45095370 + Charlie7 DNA MER1_type 1517 1669 -943 285 333 54 121 chr11 103688608 103689071 -45094401 - L2 LINE L2 0 3272 2841 2257 97 3 0 chr11 103689189 103689488 -45093984 - AluSq SINE Alu -13 300 1 596 191 9 26 chr11 103689592 103689707 -45093765 - FLAM_C SINE Alu -16 117 5 386 317 165 30 chr11 103690507 103690810 -45092662 + MLT1L LTR MaLR 195 538 -77 654 203 0 16 chr11 103690816 103690944 -45092528 + FLAM_A SINE Alu 4 129 -4 30 45 0 0 chr11 103690944 103690988 -45092484 + AT_rich Low_complexity Low_complexity 1 44 0 1947 138 0 0 chr11 103691224 103691500 -45091972 + AluSx SINE Alu 1 276 -36 222 37 0 0 chr11 103691506 103691533 -45091939 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 301 167 12 12 chr11 103691882 103691966 -45091506 + GA-rich Low_complexity Low_complexity 2 85 0 379 336 91 64 chr11 103692721 103693565 -45089907 + L2 LINE L2 151 1017 -2297 292 324 149 29 chr11 103693771 103694221 -45089251 + L2 LINE L2 2469 2972 -342 376 183 28 0 chr11 103695275 103695346 -45088126 - MER116 DNA Mariner 0 80 8 1349 174 0 31 chr11 103695589 103695847 -45087625 + L1M4 LINE L1 5434 5683 -501 496 120 26 111 chr11 103695859 103695976 -45087496 + L1M4 LINE L1 5643 5749 -415 361 329 18 12 chr11 103695976 103696146 -45087326 + L2 LINE L2 2724 2894 -420 952 203 0 0 chr11 103696357 103696534 -45086938 - FRAM SINE Alu 0 176 1 407 295 9 9 chr11 103696569 103696674 -45086798 + L2 LINE L2 3167 3271 -1 21 0 0 0 chr11 103696953 103696974 -45086498 + AT_rich Low_complexity Low_complexity 1 21 0 215 219 141 0 chr11 103697031 103697095 -45086377 + MIR SINE MIR 34 106 -102 27 29 0 0 chr11 103697337 103697371 -45086101 + AT_rich Low_complexity Low_complexity 1 34 0 186 342 17 42 chr11 103698185 103698305 -45085167 + L2 LINE L2 1790 1906 -1408 31 0 0 0 chr11 103698311 103698342 -45085130 + AT_rich Low_complexity Low_complexity 1 31 0 183 80 0 0 chr11 103699505 103699530 -45083942 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 214 338 66 33 chr11 103699703 103699854 -45083618 - L2 LINE L2 -173 3099 2944 188 368 86 20 chr11 103699964 103700116 -45083356 - L2 LINE L2 -540 2774 2613 246 386 20 0 chr11 103700243 103700344 -45083128 - L2 LINE L2 -964 2350 2248 182 392 62 36 chr11 103700566 103700760 -45082712 + L2 LINE L2 1393 1591 -1723 392 329 98 26 chr11 103700885 103701271 -45082201 + L2 LINE L2 1840 2253 -1061 400 278 33 66 chr11 103701495 103701646 -45081826 - MIR3 SINE MIR -1 207 62 23 0 0 0 chr11 103701790 103701813 -45081659 + AT_rich Low_complexity Low_complexity 1 23 0 404 280 37 0 chr11 103702151 103702258 -45081214 + MIR SINE MIR 41 151 -111 5682 259 101 25 chr11 103702564 103703899 -45079573 + L2 LINE L2 96 1327 -1987 1926 125 0 64 chr11 103703899 103704227 -45079245 + AluSg SINE Alu 1 307 -3 5682 259 101 25 chr11 103704227 103704441 -45079031 + L2 LINE L2 1327 1523 -1791 3134 101 123 8 chr11 103704441 103704938 -45078534 + MER41A LTR ERV1 1 554 0 5682 259 101 25 chr11 103704938 103705360 -45078112 + L2 LINE L2 1523 2219 -1095 427 95 27 0 chr11 103705375 103705449 -45078023 + (CA)n Simple_repeat Simple_repeat 2 77 0 11386 206 30 16 chr11 103705899 103706009 -45077463 + L1P LINE L1 2255 2362 -3784 1923 158 3 0 chr11 103706009 103706312 -45077160 + AluSx SINE Alu 1 304 -8 11386 206 30 16 chr11 103706312 103708874 -45074598 + L1P LINE L1 2362 4964 -1182 208 214 232 0 chr11 103709726 103709782 -45073690 - L2 LINE L2 -5 3267 3199 345 100 0 0 chr11 103710164 103710214 -45073258 + (CA)n Simple_repeat Simple_repeat 2 51 0 32 26 0 0 chr11 103710425 103710464 -45073008 + AT_rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr11 103710939 103710964 -45072508 + AT_rich Low_complexity Low_complexity 1 25 0 28 29 0 0 chr11 103711057 103711092 -45072380 + AT_rich Low_complexity Low_complexity 1 35 0 27 29 0 0 chr11 103712457 103712491 -45070981 + AT_rich Low_complexity Low_complexity 1 34 0 28 61 0 0 chr11 103712784 103712833 -45070639 + AT_rich Low_complexity Low_complexity 1 49 0 214 225 200 38 chr11 103713341 103713421 -45070051 + MIR SINE MIR 30 122 -86 190 361 28 0 chr11 103713431 103713503 -45069969 + MIR3 SINE MIR 85 158 -50 203 301 98 30 chr11 103713537 103713670 -45069802 - MER5A DNA MER1_type -46 143 2 192 339 0 0 chr11 103713746 103713805 -45069667 + L2 LINE L2 3250 3308 -5 230 316 0 0 chr11 103713805 103713862 -45069610 + polypurine Low_complexity Low_complexity 5 61 0 520 276 58 6 chr11 103714914 103715070 -45068402 + MIR SINE MIR 96 259 -3 1089 267 124 27 chr11 103716259 103716709 -45066763 + MLT1J LTR MaLR 4 497 -14 882 189 0 42 chr11 103716963 103717154 -45066318 + AluJo SINE Alu 120 302 -10 7967 135 37 18 chr11 103717154 103718481 -45064991 + Tigger2 DNA MER2_type 794 2145 -573 372 94 0 0 chr11 103718658 103718711 -45064761 + (A)n Simple_repeat Simple_repeat 1 53 0 326 309 142 22 chr11 103719019 103719336 -45064136 + HAL1b LINE L1 255 609 -739 313 164 18 18 chr11 103719632 103719687 -45063785 + Tigger5 DNA MER2_type 1 55 -2268 * 541 95 0 14 chr11 103719656 103719730 -45063742 + Tigger5 DNA MER2_type 2251 2323 0 973 196 46 39 chr11 103720177 103720437 -45063035 + L1ME2 LINE L1 5893 6154 -10 30673 37 8 2 chr11 103721119 103726645 -45056827 - L1PA4 LINE L1 -2 6153 487 21 0 0 0 chr11 103727041 103727062 -45056410 + AT_rich Low_complexity Low_complexity 1 21 0 224 229 21 0 chr11 103727172 103727220 -45056252 + CT-rich Low_complexity Low_complexity 1 49 0 * 229 200 0 0 chr11 103727219 103727269 -45056203 + (CA)n Simple_repeat Simple_repeat 1 50 0 279 0 0 0 chr11 103727715 103727746 -45055726 + (T)n Simple_repeat Simple_repeat 1 31 0 829 172 81 0 chr11 103728187 103728373 -45055099 + L1MB8 LINE L1 5970 6170 -8 336 194 0 0 chr11 103728637 103728699 -45054773 + L1MB7 LINE L1 6062 6123 -61 2318 74 0 7 chr11 103728699 103728997 -45054475 - AluY SINE Alu -15 296 1 1685 120 3 28 chr11 103730216 103730499 -45052973 - AluSx SINE Alu -36 276 1 2200 119 3 0 chr11 103730653 103730955 -45052517 + AluSx SINE Alu 5 307 -5 22 0 0 0 chr11 103731641 103731663 -45051809 + AT_rich Low_complexity Low_complexity 1 22 0 407 227 111 23 chr11 103731728 103731900 -45051572 + L1ME4a LINE L1 5594 5780 -341 244 244 106 8 chr11 103731999 103732122 -45051350 + L1ME4a LINE L1 5963 6097 -24 2004 154 71 45 chr11 103733099 103733522 -45049950 - Tigger2a DNA MER2_type 0 434 1 1059 196 5 5 chr11 103733824 103734013 -45049459 - MER5A DNA MER1_type 0 189 1 1484 211 7 10 chr11 103734465 103734759 -45048713 - AluJb SINE Alu -19 293 1 1066 158 0 0 chr11 103735928 103736093 -45047379 - AluSg/x SINE Alu -12 300 136 21 0 0 0 chr11 103736102 103736123 -45047349 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr11 103736361 103736393 -45047079 + AT_rich Low_complexity Low_complexity 1 32 0 874 127 8 0 chr11 103736396 103736522 -45046950 - FLAM_C SINE Alu -6 127 1 432 291 73 24 chr11 103737724 103737889 -45045583 - MIR3 SINE MIR -17 191 19 280 353 120 38 chr11 103738188 103738321 -45045151 - L2 LINE L2 -12 3260 3117 36 23 0 0 chr11 103738636 103738679 -45044793 + AT_rich Low_complexity Low_complexity 1 43 0 23 54 0 0 chr11 103739694 103739731 -45043741 + AT_rich Low_complexity Low_complexity 1 37 0 384 223 46 91 chr11 103739995 103740170 -45043302 - MIR SINE MIR -2 260 94 320 347 46 36 chr11 103740494 103740713 -45042759 + MIR SINE MIR 36 256 -6 263 202 48 0 chr11 103741311 103741395 -45042077 + (TA)n Simple_repeat Simple_repeat 1 88 0 713 298 56 53 chr11 103741694 103742013 -45041459 + L2 LINE L2 2994 3313 0 1859 144 4 7 chr11 103742052 103742329 -45041143 - AluJb SINE Alu -21 291 16 215 343 105 9 chr11 103743652 103743757 -45039715 - L2 LINE L2 -181 3091 2977 2758 0 0 0 chr11 103743766 103744060 -45039412 + AluYa5 SINE Alu 1 294 -17 913 182 13 6 chr11 103744061 103744220 -45039252 + AluSg/x SINE Alu 132 291 -21 2104 84 7 4 chr11 103744367 103744642 -45038830 - AluSc SINE Alu -33 276 1 729 352 22 29 chr11 103744976 103745253 -45038219 - ERVL LTR ERVL -341 5423 5146 2153 140 13 21 chr11 103745253 103745631 -45037841 + THE1C LTR MaLR 1 375 0 10102 117 12 48 chr11 103745631 103747269 -45036203 + THE1C-int LTR MaLR 1 1580 0 2034 155 13 29 chr11 103747269 103747650 -45035822 + THE1C LTR MaLR 1 375 0 729 352 22 29 chr11 103747650 103747825 -45035647 - ERVL LTR ERVL -615 5149 4972 9136 101 3 8 chr11 103747925 103749188 -45034284 - THE1B-int LTR MaLR -323 1257 1 1945 155 21 51 chr11 103749188 103749563 -45033909 - THE1B LTR MaLR 0 364 1 635 145 0 26 chr11 103749564 103749681 -45033791 + L1PB4 LINE L1 6040 6153 -3 1146 265 69 100 chr11 103749726 103750259 -45033213 + MLT1G1 LTR MaLR 1 514 -81 1525 202 3 26 chr11 103750259 103750561 -45032911 + AluJb SINE Alu 5 299 -13 1146 265 69 100 chr11 103750561 103750639 -45032833 + MLT1G1 LTR MaLR 514 593 -2 347 307 161 18 chr11 103750900 103751285 -45032187 + L1ME4a LINE L1 5453 5884 -237 242 241 60 69 chr11 103751375 103751491 -45031981 + L1M4 LINE L1 4806 4920 -1226 1711 164 24 7 chr11 103751537 103751829 -45031643 - AluSx SINE Alu -15 297 1 378 357 31 19 chr11 103751933 103752191 -45031281 + L1M4 LINE L1 5039 5299 -847 1908 96 4 0 chr11 103752531 103752780 -45030692 + AluSx SINE Alu 1 250 -62 346 266 127 25 chr11 103754364 103754522 -45028950 + MIR SINE MIR 3 176 -86 398 188 42 0 chr11 103754788 103754884 -45028588 - MER5C DNA MER1_type -6 318 219 252 209 0 0 chr11 103754885 103754928 -45028544 - MER2 DNA MER2_type -19 326 284 1283 157 5 5 chr11 103754967 103755177 -45028295 - MER2 DNA MER2_type -135 210 1 490 228 166 0 chr11 103755178 103755323 -45028149 - MER5C DNA MER1_type -104 220 52 2763 163 40 24 chr11 103755337 103755964 -45027508 + L1 LINE L1 4247 4883 -1263 622 317 89 34 chr11 103756107 103756432 -45027040 - ERVL LTR ERVL -772 4992 4650 1840 296 25 44 chr11 103756465 103757216 -45026256 - ERVL LTR ERVL -1132 4522 3786 761 203 0 7 chr11 103757422 103757565 -45025907 + L1PB4 LINE L1 5902 6043 -113 2269 112 25 35 chr11 103757565 103757932 -45025540 - THE1B LTR MaLR 0 364 2 447 150 0 0 chr11 103757933 103758013 -45025459 - THE1B-int LTR MaLR 0 1580 1501 504 117 0 0 chr11 103758333 103758410 -45025062 + (CA)n Simple_repeat Simple_repeat 2 78 0 246 300 88 0 chr11 103759128 103759203 -45024269 + MLT1J LTR MaLR 11 92 -419 764 201 32 0 chr11 103759203 103759357 -45024115 + MLT1E1 LTR MaLR 1 159 -495 1209 211 18 0 chr11 103759361 103759584 -45023888 + MLT1E LTR MaLR 367 593 0 344 289 37 15 chr11 103759594 103759729 -45023743 + MLT1J LTR MaLR 99 236 -275 453 319 39 11 chr11 103760715 103760897 -45022575 + MIR SINE MIR 76 262 0 2811 161 75 6 chr11 103761466 103761958 -45021514 + Tigger7 DNA MER2_type 1 526 -1961 599 154 0 0 chr11 103761952 103762043 -45021429 + Tigger7 DNA MER2_type 2400 2490 -1 * 690 165 33 0 chr11 103762175 103762296 -45021176 + FLAM_A SINE Alu 1 125 -8 40 37 0 0 chr11 103764760 103764814 -45018658 + AT_rich Low_complexity Low_complexity 1 54 0 21 57 0 0 chr11 103765081 103765116 -45018356 + AT_rich Low_complexity Low_complexity 1 35 0 265 186 51 0 chr11 103765694 103765753 -45017719 - L1ME3A LINE L1 -101 6052 5991 5543 104 25 45 chr11 103765825 103766715 -45016757 - MER4D LTR ERV1 0 872 1 340 226 177 32 chr11 103766742 103766928 -45016544 - L1ME3A LINE L1 -219 5930 5718 1084 285 52 0 chr11 103766929 103767255 -45016217 - LTR16C LTR ERVL 0 491 149 387 340 51 28 chr11 103767516 103767769 -45015703 - ERVL LTR ERVL -381 5383 5125 306 280 44 55 chr11 103768038 103768220 -45015252 - L1ME3A LINE L1 -1894 4235 4056 1311 275 51 79 chr11 103768228 103768439 -45015033 - L1ME3A LINE L1 -2313 3816 3601 2150 121 0 3 chr11 103768439 103768736 -45014736 + AluSx SINE Alu 3 298 -14 1311 275 51 79 chr11 103768736 103769442 -45014030 - L1ME3A LINE L1 -2528 3601 2877 1544 173 81 0 chr11 103769442 103769464 -45014008 - AluJb SINE Alu -4 308 289 441 0 0 0 chr11 103769464 103769513 -45013959 + (TG)n Simple_repeat Simple_repeat 2 50 0 1544 173 81 0 chr11 103769513 103769653 -45013819 - AluJb SINE Alu -23 289 162 198 91 0 0 chr11 103769653 103769686 -45013786 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1544 173 81 0 chr11 103769686 103769806 -45013666 - AluJb SINE Alu -150 162 2 1311 275 51 79 chr11 103769806 103769876 -45013596 - L1ME3A LINE L1 -3252 2877 2807 2346 99 0 0 chr11 103769876 103770178 -45013294 - AluSx SINE Alu -10 302 1 1311 275 51 79 chr11 103770178 103770379 -45013093 - L1ME3A LINE L1 -3322 2807 2659 358 332 103 15 chr11 103770397 103770786 -45012686 - L1ME3A LINE L1 -5245 874 452 4262 188 25 24 chr11 103771130 103771695 -45011777 - L1MB7 LINE L1 -14 6170 5607 1835 161 0 13 chr11 103771695 103771999 -45011473 - AluJb SINE Alu -12 300 1 4262 188 25 24 chr11 103771999 103772880 -45010592 - L1MB7 LINE L1 -577 5607 4730 326 320 51 55 chr11 103773488 103773664 -45009808 + MLT1L LTR MaLR 360 536 -79 377 188 66 88 chr11 103773664 103773845 -45009627 - MER104 DNA MER2_type 0 180 4 326 320 51 55 chr11 103773845 103773924 -45009548 + MLT1L LTR MaLR 536 614 -1 865 300 130 21 chr11 103774098 103774475 -45008997 + LTR33A LTR ERVL 92 509 -14 1156 328 46 6 chr11 103775159 103775634 -45007838 + MLT1K LTR MaLR 49 542 -46 1588 144 87 29 chr11 103776067 103776413 -45007059 + THE1C LTR MaLR 1 366 -9 2314 93 0 0 chr11 103776961 103777252 -45006220 + AluY SINE Alu 1 291 -20 4315 136 17 4 chr11 103780672 103781386 -45002086 + L1PA16 LINE L1 5443 6165 -1 4023 136 81 18 chr11 103783093 103783831 -44999641 + LTR1 LTR ERV1 1 785 0 642 306 61 22 chr11 103784558 103784787 -44998685 - MIR SINE MIR -1 261 24 311 292 50 25 chr11 103784955 103785075 -44998397 + MIR SINE MIR 84 206 -56 3248 266 134 23 chr11 103785350 103786469 -44997003 - L2 LINE L2 -99 3214 1901 1787 131 30 0 chr11 103786469 103786736 -44996736 - AluSx SINE Alu -37 275 1 3248 266 134 23 chr11 103786736 103786966 -44996506 - L2 LINE L2 -1412 1901 1698 342 0 0 0 chr11 103787519 103787557 -44995915 + (TAA)n Simple_repeat Simple_repeat 1 38 0 367 309 80 12 chr11 103788288 103788450 -44995022 - MER5A DNA MER1_type 0 189 17 490 274 45 94 chr11 103788918 103789163 -44994309 + L2 LINE L2 3039 3271 -1 812 284 53 29 chr11 103789267 103789647 -44993825 + MLT1I LTR MaLR 17 405 -4 472 241 97 16 chr11 103790424 103790570 -44992902 + MIR3 SINE MIR 7 161 -87 411 360 63 9 chr11 103792070 103792292 -44991180 + MIR SINE MIR 29 262 0 4004 126 18 0 chr11 103792761 103793379 -44990093 + L1PA16 LINE L1 5524 6152 -14 2088 106 0 34 chr11 103793399 103793691 -44989781 - AluSc SINE Alu -27 282 1 621 276 11 11 chr11 103793773 103793958 -44989514 - MIR SINE MIR -6 256 72 225 0 0 0 chr11 103794702 103794727 -44988745 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 339 291 0 0 chr11 103794738 103794817 -44988655 + L2 LINE L2 3194 3272 0 342 98 0 0 chr11 103795014 103795065 -44988407 + (TTCA)n Simple_repeat Simple_repeat 1 51 0 583 277 40 11 chr11 103795111 103795288 -44988184 - MIR SINE MIR -80 182 1 203 316 24 97 chr11 103795288 103795487 -44987985 - L2 LINE L2 -95 3177 2994 2016 174 0 0 chr11 103795541 103795852 -44987620 - AluJb SINE Alu -1 311 1 641 322 70 60 chr11 103796151 103796452 -44987020 + L2 LINE L2 2969 3272 0 26 50 0 0 chr11 103796984 103797024 -44986448 + AT_rich Low_complexity Low_complexity 1 40 0 2165 82 10 14 chr11 103797769 103798063 -44985409 + AluSg SINE Alu 1 293 -17 330 295 23 49 chr11 103798065 103798370 -44985102 + L1ME1 LINE L1 4651 4947 -1199 348 237 25 69 chr11 103798824 103799023 -44984449 + MIR SINE MIR 10 262 0 246 32 0 0 chr11 103799153 103799184 -44984288 + (TG)n Simple_repeat Simple_repeat 2 32 0 284 183 84 0 chr11 103799239 103799310 -44984162 + MER103 DNA DNA 38 114 -52 2070 89 13 29 chr11 103799519 103799833 -44983639 + AluY SINE Alu 2 310 -1 856 244 2 1 chr11 103799917 103800126 -44983346 + L1ME1 LINE L1 5465 5675 -491 1606 133 34 4 chr11 103800137 103800400 -44983072 + AluSx SINE Alu 12 282 -30 270 175 0 16 chr11 103800500 103800563 -44982909 + Alu SINE Alu 240 301 0 1321 254 53 2 chr11 103800583 103800997 -44982475 + L1ME1 LINE L1 5724 6158 -8 262 284 224 17 chr11 103801436 103801552 -44981920 + L2 LINE L2 3133 3272 0 225 0 0 0 chr11 103802365 103802390 -44981082 + (TG)n Simple_repeat Simple_repeat 1 25 0 225 0 0 0 chr11 103802389 103802414 -44981058 + (GA)n Simple_repeat Simple_repeat 1 25 0 180 0 0 0 chr11 103802413 103802433 -44981039 + (TG)n Simple_repeat Simple_repeat 2 21 0 * 350 293 159 24 chr11 103803758 103803976 -44979496 + MIR SINE MIR 5 248 -14 27 49 0 0 chr11 103806026 103806067 -44977405 + AT_rich Low_complexity Low_complexity 1 41 0 830 289 143 14 chr11 103806532 103806882 -44976590 + L2 LINE L2 2906 3300 -13 228 67 0 0 chr11 103806884 103806914 -44976558 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 1556 166 38 41 chr11 103806924 103807214 -44976258 + AluJb SINE Alu 1 289 -23 676 167 23 11 chr11 103807214 103807388 -44976084 + GA-rich Low_complexity Low_complexity 4 179 0 2485 46 0 7 chr11 103807630 103807935 -44975537 + AluY SINE Alu 4 306 -5 342 0 0 0 chr11 103808115 103808153 -44975319 + (TTTTA)n Simple_repeat Simple_repeat 1 38 0 1985 106 0 11 chr11 103808153 103808435 -44975037 - AluY SINE Alu -32 279 1 1091 289 94 15 chr11 103808641 103809353 -44974119 + L1MC/D LINE L1 3954 4721 -1425 343 293 80 45 chr11 103809454 103810183 -44973289 + L1MC/D LINE L1 4877 5637 -622 549 128 0 39 chr11 103810452 103810554 -44972918 + L1MCa LINE L1 747 844 -5582 388 289 113 5 chr11 103810557 103810776 -44972696 + L1M4 LINE L1 4310 4559 -1587 249 336 65 39 chr11 103811063 103811295 -44972177 - L2 LINE L2 -638 2676 2439 393 295 52 29 chr11 103811552 103811725 -44971747 + MIR SINE MIR 17 193 -69 2422 164 20 8 chr11 103812149 103812636 -44970836 - L1MC2 LINE L1 -139 6205 5713 2369 154 39 30 chr11 103812682 103813144 -44970328 - MLT1C LTR MaLR -1 466 1 333 0 0 0 chr11 103813288 103813325 -44970147 + (A)n Simple_repeat Simple_repeat 1 37 0 2245 85 7 3 chr11 103813433 103813727 -44969745 - AluSc SINE Alu -14 295 1 1937 119 54 18 chr11 103818429 103818765 -44964707 + MER61B LTR ERV1 1 348 -77 360 82 0 0 chr11 103818866 103818915 -44964557 + MER61B LTR ERV1 377 425 0 275 266 73 90 chr11 103819906 103820294 -44963178 + MLT1J LTR MaLR 1 437 -74 5391 137 64 33 chr11 103820397 103820950 -44962522 + Tigger3b DNA MER2_type 1 535 -2493 2346 134 46 0 chr11 103820950 103821361 -44962111 + L1MA5 LINE L1 5869 6298 -2 5391 137 64 33 chr11 103821361 103822001 -44961471 + Tigger3b DNA MER2_type 535 1231 0 789 151 0 0 chr11 103822125 103822244 -44961228 - FLAM_A SINE Alu -14 119 1 22 0 0 0 chr11 103823156 103823178 -44960294 + AT_rich Low_complexity Low_complexity 1 22 0 336 222 40 0 chr11 103823619 103823718 -44959754 + MER90 LTR ERV1 164 266 -309 1758 134 24 21 chr11 103823844 103824158 -44959314 - AluSg SINE Alu 0 310 1 478 270 76 85 chr11 103824220 103824454 -44959018 - MIR SINE MIR -37 225 4 982 230 81 0 chr11 103824579 103824801 -44958671 - MER90 LTR ERV1 0 614 375 862 241 45 0 chr11 103824807 103825052 -44958420 - MER90 LTR ERV1 -309 266 11 432 0 0 0 chr11 103825773 103825821 -44957651 + (TG)n Simple_repeat Simple_repeat 1 48 0 202 194 0 0 chr11 103825821 103825857 -44957615 + GA-rich Low_complexity Low_complexity 2 37 0 1579 128 0 5 chr11 103825931 103826149 -44957323 - AluSg/x SINE Alu -15 297 81 352 212 124 66 chr11 103826525 103826662 -44956810 + MIR SINE MIR 116 260 -2 619 75 0 0 chr11 103828524 103828604 -44954868 - MADE1 DNA Mariner 0 80 1 1597 155 0 96 chr11 103830474 103830797 -44952675 - AluJb SINE Alu -18 294 3 2071 128 3 19 chr11 103830875 103831187 -44952285 + AluSx SINE Alu 1 307 -5 683 240 105 18 chr11 103831423 103831652 -44951820 - MIR SINE MIR -12 250 2 659 306 97 5 chr11 103832449 103832665 -44950807 + MIR SINE MIR 13 248 -14 258 272 216 16 chr11 103833055 103833180 -44950292 + MIR SINE MIR 113 262 0 239 276 13 13 chr11 103833361 103833437 -44950035 + Charlie8 DNA MER1_type 2342 2417 0 512 82 59 35 chr11 103833574 103833659 -44949813 + L1PA11 LINE L1 6083 6169 -5 252 0 0 0 chr11 103833659 103833687 -44949785 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 209 250 21 0 chr11 103833729 103833777 -44949695 - L2 LINE L2 0 3272 3224 180 176 0 0 chr11 103834545 103834579 -44948893 + (TATG)n Simple_repeat Simple_repeat 4 37 0 293 209 194 0 chr11 103835107 103835174 -44948298 - L2 LINE L2 0 3313 3234 23 0 0 0 chr11 103835522 103835545 -44947927 + AT_rich Low_complexity Low_complexity 1 23 0 528 81 0 0 chr11 103835705 103835779 -44947693 + (TCTG)n Simple_repeat Simple_repeat 3 76 0 293 243 68 0 chr11 103835824 103835898 -44947574 - L3 LINE CR1 -45 1532 1454 216 374 56 19 chr11 103836049 103836156 -44947316 - L2 LINE L2 -35 3237 3127 202 288 17 0 chr11 103837461 103837520 -44945952 + CT-rich Low_complexity Low_complexity 1 60 0 1217 173 23 5 chr11 103837868 103838088 -44945384 + MER58A DNA MER1_type 1 224 0 378 236 126 31 chr11 103838272 103838399 -44945073 - MIR3 SINE MIR -24 184 46 703 324 86 63 chr11 103839305 103839837 -44943635 + L2 LINE L2 2724 3267 -5 735 181 3 0 chr11 103840084 103840487 -44942985 + (ATG)n Simple_repeat Simple_repeat 1 404 0 702 178 4 0 chr11 103840530 103840786 -44942686 + (ATG)n Simple_repeat Simple_repeat 1 257 0 254 312 83 9 chr11 103840898 103841007 -44942465 - MIR SINE MIR -34 228 112 209 224 80 30 chr11 103841144 103841238 -44942234 + MIR SINE MIR 6 70 -138 431 388 21 13 chr11 103842181 103842418 -44941054 + MIR SINE MIR 3 241 -21 1372 179 40 64 chr11 103842418 103842792 -44940680 + MLT1A1 LTR MaLR 1 365 0 242 329 26 0 chr11 103842939 103843015 -44940457 + MIR3 SINE MIR 108 185 -23 1023 82 0 7 chr11 103844136 103844271 -44939201 - AluSp/q SINE Alu -7 306 173 439 305 55 6 chr11 103844562 103844726 -44938746 + MIR3 SINE MIR 30 201 -7 270 241 35 0 chr11 103845918 103845976 -44937496 + polypyrimidine Low_complexity Low_complexity 1 60 0 329 200 50 12 chr11 103846400 103846480 -44936992 + L2 LINE L2 3231 3313 0 466 270 38 71 chr11 103846578 103846789 -44936683 + MIR SINE MIR 54 257 -5 2408 80 3 10 chr11 103846866 103847178 -44936294 + AluSg SINE Alu 1 310 0 183 42 0 0 chr11 103847186 103847210 -44936262 + (A)n Simple_repeat Simple_repeat 1 24 0 300 158 0 0 chr11 103847379 103847436 -44936036 + A-rich Low_complexity Low_complexity 1 57 0 375 348 128 10 chr11 103848988 103849192 -44934280 + MIR SINE MIR 21 248 -14 237 108 0 0 chr11 103850614 103850651 -44932821 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 195 290 170 20 chr11 103850651 103850751 -44932721 - L2 LINE L2 -17 3296 3182 491 221 112 157 chr11 103850788 103851055 -44932417 - MIR SINE MIR -2 260 6 274 302 12 0 chr11 103851438 103851524 -44931948 + MIR SINE MIR 176 262 0 208 300 62 12 chr11 103852514 103852594 -44930878 - L2 LINE L2 -36 3236 3153 185 326 0 0 chr11 103853789 103853838 -44929634 - MIR SINE MIR -66 142 94 23 0 0 0 chr11 103854318 103854341 -44929131 + AT_rich Low_complexity Low_complexity 1 23 0 332 308 37 9 chr11 103855518 103855625 -44927847 + MIR3 SINE MIR 75 184 -24 295 314 24 40 chr11 103856460 103856584 -44926888 - MIR3 SINE MIR -45 163 42 227 226 0 32 chr11 103856815 103856908 -44926564 + (TCCA)n Simple_repeat Simple_repeat 1 90 0 2114 130 0 7 chr11 103857764 103858071 -44925401 - AluSg SINE Alu -3 307 3 1564 141 0 0 chr11 103858339 103858566 -44924906 + AluSg/x SINE Alu 83 309 -1 262 185 74 0 chr11 103858566 103858620 -44924852 - MIR SINE MIR -132 130 73 1453 119 16 49 chr11 103858998 103859242 -44924230 - MER46A DNA MER2_type 0 236 1 184 200 36 0 chr11 103861202 103861257 -44922215 + CT-rich Low_complexity Low_complexity 2 58 0 401 314 88 68 chr11 103862518 103862929 -44920543 + L2 LINE L2 2854 3272 0 310 340 32 49 chr11 103862932 103863117 -44920355 - MIR SINE MIR -2 260 79 239 300 31 117 chr11 103863636 103863859 -44919613 + L3 LINE CR1 1359 1562 -15 288 330 34 17 chr11 103863940 103864058 -44919414 + MIR SINE MIR 20 139 -123 592 270 56 20 chr11 103864095 103864291 -44919181 + MIR SINE MIR 58 260 -2 252 0 0 0 chr11 103864866 103864894 -44918578 + (CA)n Simple_repeat Simple_repeat 1 28 0 733 287 63 13 chr11 103865055 103865292 -44918180 - MIR SINE MIR -12 250 2 790 286 4 17 chr11 103866091 103866329 -44917143 - L2 LINE L2 -1 3312 3078 436 276 31 39 chr11 103866306 103866563 -44916909 - L2 LINE L2 -341 2973 2719 * 308 232 49 106 chr11 103867837 103867888 -44915584 - MER5B DNA MER1_type 0 178 126 360 0 0 0 chr11 103867888 103867928 -44915544 + (CA)n Simple_repeat Simple_repeat 1 40 0 308 232 49 106 chr11 103867928 103868018 -44915454 - MER5B DNA MER1_type -52 126 45 2049 70 4 8 chr11 103868028 103868286 -44915186 + AluY SINE Alu 33 289 -22 198 103 0 0 chr11 103868390 103868419 -44915053 + (TC)n Simple_repeat Simple_repeat 1 29 0 360 0 0 0 chr11 103868419 103868459 -44915013 + (TG)n Simple_repeat Simple_repeat 1 40 0 215 191 21 21 chr11 103868463 103868510 -44914962 - MER5B DNA MER1_type -131 47 1 436 276 31 39 chr11 103869786 103870043 -44913429 + L2 LINE L2 2719 2973 -341 * 790 286 4 17 chr11 103870020 103870258 -44913214 + L2 LINE L2 3078 3312 -1 733 287 63 13 chr11 103871057 103871294 -44912178 + MIR SINE MIR 2 250 -12 252 0 0 0 chr11 103871455 103871483 -44911989 + (TG)n Simple_repeat Simple_repeat 1 28 0 592 270 56 20 chr11 103872058 103872254 -44911218 - MIR SINE MIR -2 260 58 288 330 34 17 chr11 103872291 103872409 -44911063 - MIR SINE MIR -123 139 20 239 300 31 117 chr11 103872490 103872713 -44910759 - L3 LINE CR1 -15 1562 1359 310 340 32 49 chr11 103873231 103873416 -44910056 + MIR SINE MIR 79 260 -2 401 314 88 68 chr11 103873419 103873830 -44909642 - L2 LINE L2 0 3272 2854 184 200 36 0 chr11 103875094 103875149 -44908323 + GA-rich Low_complexity Low_complexity 2 58 0 1570 123 8 41 chr11 103877112 103877356 -44906116 + MER46A DNA MER2_type 1 236 0 1395 194 16 44 chr11 103878439 103878754 -44904718 - AluJo SINE Alu -5 307 2 249 245 310 7 chr11 103878942 103879097 -44904375 - L2 LINE L2 -118 3195 2994 1936 165 0 23 chr11 103880573 103880882 -44902590 - AluJb SINE Alu -9 303 2 1608 148 154 30 chr11 103881534 103881866 -44901606 + THE1C LTR MaLR 3 375 0 2044 96 46 3 chr11 103884411 103884693 -44898779 - AluSc SINE Alu -15 294 1 615 262 74 20 chr11 103885371 103885573 -44897899 + MIR SINE MIR 11 223 -39 2363 86 3 0 chr11 103885621 103885912 -44897560 - AluSp SINE Alu -21 292 1 342 291 189 0 chr11 103886165 103886313 -44897159 - MER5A DNA MER1_type -4 185 10 389 195 24 0 chr11 103886548 103886630 -44896842 - MER5A DNA MER1_type -80 109 26 2194 84 3 16 chr11 103887325 103887633 -44895839 + AluY SINE Alu 1 304 -7 2326 109 0 3 chr11 103887738 103888050 -44895422 - AluSx SINE Alu -1 311 1 282 193 0 0 chr11 103888140 103888197 -44895275 + CT-rich Low_complexity Low_complexity 1 57 0 1614 155 3 46 chr11 103888198 103888501 -44894971 - AluJo SINE Alu -22 290 1 391 169 42 0 chr11 103888517 103888588 -44894884 - L1MC2 LINE L1 -18 6326 6253 1978 113 13 10 chr11 103888954 103889255 -44894217 + AluSg SINE Alu 1 302 -8 401 291 67 18 chr11 103889328 103889493 -44893979 + L2 LINE L2 2864 3036 -277 241 130 0 37 chr11 103889496 103889550 -44893922 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 1793 124 81 34 chr11 103889550 103889848 -44893624 - AluSx SINE Alu 0 312 1 1839 224 17 44 chr11 103889900 103890267 -44893205 + L1ME3A LINE L1 5666 6016 -154 2360 102 0 0 chr11 103890267 103890572 -44892900 - AluSx SINE Alu -7 305 1 1839 224 17 44 chr11 103890572 103890723 -44892749 + L1ME3A LINE L1 6016 6170 0 353 206 227 41 chr11 103890736 103890930 -44892542 + L2 LINE L2 3083 3312 -1 363 136 0 0 chr11 103891828 103891887 -44891585 + (CA)n Simple_repeat Simple_repeat 1 59 0 1080 53 0 8 chr11 103892274 103892407 -44891065 + AluY SINE Alu 1 132 -179 234 0 0 0 chr11 103892407 103892433 -44891039 + (A)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr11 103892433 103892455 -44891017 + GC_rich Low_complexity Low_complexity 1 22 0 2550 54 0 0 chr11 103893078 103893375 -44890097 + AluY SINE Alu 1 297 -14 342 279 74 58 chr11 103893402 103893592 -44889880 - L2 LINE L2 -40 3273 3081 1751 190 103 3 chr11 103893729 103894087 -44889385 - MLT1D LTR MaLR 0 505 112 199 404 73 0 chr11 103894340 103894449 -44889023 - L2 LINE L2 -49 3223 3107 250 221 10 106 chr11 103894552 103894656 -44888816 + MIR SINE MIR 117 210 -52 209 189 0 0 chr11 103894697 103894734 -44888738 + (CAT)n Simple_repeat Simple_repeat 3 39 0 186 293 170 28 chr11 103896179 103896285 -44887187 - L2 LINE L2 -15 3257 3137 2099 130 0 13 chr11 103896349 103896649 -44886823 + AluSx SINE Alu 1 296 -16 376 253 23 0 chr11 103896844 103896931 -44886541 - L2 LINE L2 0 3272 3184 21 0 0 0 chr11 103897642 103897663 -44885809 + AT_rich Low_complexity Low_complexity 1 21 0 402 297 181 0 chr11 103898046 103898184 -44885288 - MER5A DNA MER1_type -1 188 26 2151 117 0 13 chr11 103898184 103898482 -44884990 + AluSx SINE Alu 1 294 -18 933 136 68 0 chr11 103899381 103899528 -44883944 - MER5A DNA MER1_type -32 157 1 476 223 0 150 chr11 103899549 103899673 -44883799 + MER5B DNA MER1_type 14 155 -23 216 0 0 0 chr11 103899673 103899697 -44883775 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1543 144 30 8 chr11 103899699 103899962 -44883510 - L1PA16 LINE L1 -9 6157 5889 476 223 0 150 chr11 103899962 103900027 -44883445 + MER5B DNA MER1_type 156 177 -1 207 367 41 55 chr11 103900762 103900980 -44882492 - L3 LINE CR1 -87 1490 1276 1082 202 36 56 chr11 103901274 103901611 -44881861 + L1M4 LINE L1 2403 2732 -3414 1013 231 16 25 chr11 103901599 103901802 -44881670 + L1MB7 LINE L1 5897 6099 -85 * 2226 120 0 0 chr11 103901802 103902094 -44881378 + AluSx SINE Alu 3 294 -18 1013 231 16 25 chr11 103902094 103902133 -44881339 + L1MB7 LINE L1 6099 6137 -47 465 162 50 20 chr11 103902336 103902435 -44881037 - L2 LINE L2 0 3313 3212 23 0 0 0 chr11 103903297 103903320 -44880152 + AT_rich Low_complexity Low_complexity 1 23 0 27 73 0 0 chr11 103903640 103903695 -44879777 + AT_rich Low_complexity Low_complexity 1 55 0 2116 143 0 9 chr11 103903784 103904099 -44879373 + AluJb SINE Alu 1 312 0 183 240 60 40 chr11 103904222 103904273 -44879199 - MIR SINE MIR -100 108 56 * 332 289 24 77 chr11 103904270 103904478 -44878994 + L2 LINE L2 3112 3308 -5 588 266 41 50 chr11 103905029 103905086 -44878386 - MIR SINE MIR 0 262 206 2103 162 78 8 chr11 103905086 103905456 -44878016 + MSTD LTR MaLR 1 396 0 588 266 41 50 chr11 103905456 103905616 -44877856 - MIR SINE MIR -56 206 47 722 121 0 0 chr11 103905853 103905952 -44877520 + AluSg/x SINE Alu 199 297 -13 186 43 0 0 chr11 103906459 103906482 -44876990 + (CATA)n Simple_repeat Simple_repeat 2 24 0 2360 56 7 0 chr11 103909343 103909628 -44873844 + AluY SINE Alu 9 295 -16 462 65 0 0 chr11 103911577 103911639 -44871833 + (CA)n Simple_repeat Simple_repeat 2 63 0 2273 106 0 17 chr11 103912048 103912349 -44871123 + AluSg SINE Alu 1 296 -14 1429 119 60 8 chr11 103912383 103912635 -44870837 + AluSg SINE Alu 28 292 -18 185 70 0 105 chr11 103912682 103912739 -44870733 + (TTCTCC)n Simple_repeat Simple_repeat 3 53 0 603 267 111 108 chr11 103913077 103913493 -44869979 - L2 LINE L2 -4 3268 2852 641 253 146 0 chr11 103913764 103913922 -44869550 + MER5A DNA MER1_type 9 189 0 2543 146 57 0 chr11 103914350 103914755 -44868717 + MSTA LTR MaLR 1 428 0 1596 201 3 20 chr11 103914824 103915117 -44868355 + AluJo SINE Alu 1 288 -24 345 308 19 10 chr11 103916203 103916307 -44867165 + MIR SINE MIR 11 115 -147 697 196 0 0 chr11 103916321 103916464 -44867008 + MER96B DNA MER1_type? 244 386 -31 318 319 0 50 chr11 103916474 103916518 -44866954 + MIR SINE MIR 113 158 -104 2071 118 0 24 chr11 103916518 103916854 -44866618 + AluSg SINE Alu 1 310 0 318 319 0 50 chr11 103916854 103916950 -44866522 + MIR SINE MIR 158 246 -16 841 172 53 18 chr11 103917016 103917185 -44866287 - MER5A DNA MER1_type -6 183 9 242 325 35 86 chr11 103917554 103917751 -44865721 - L2 LINE L2 -56 3216 3030 204 40 0 0 chr11 103918468 103918493 -44864979 + (A)n Simple_repeat Simple_repeat 1 25 0 416 358 17 35 chr11 103923809 103923929 -44859543 - MIR SINE MIR -20 242 126 2173 124 0 0 chr11 103923929 103924228 -44859244 + AluSx SINE Alu 1 299 -13 416 358 17 35 chr11 103924228 103924339 -44859133 - MIR SINE MIR -136 126 15 578 184 144 63 chr11 103924753 103924927 -44858545 + MER5A DNA MER1_type 2 189 0 2295 73 3 7 chr11 103924932 103925232 -44858240 + AluY SINE Alu 1 299 -12 2264 104 3 3 chr11 103925494 103925792 -44857680 - AluSq SINE Alu -15 298 1 517 299 0 0 chr11 103925987 103926121 -44857351 - L2 LINE L2 0 3313 3180 474 255 90 35 chr11 103926765 103927020 -44856452 - LTR33 LTR ERVL 0 521 253 349 316 90 15 chr11 103927122 103927255 -44856217 - L2 LINE L2 -6 3266 3124 311 276 0 26 chr11 103927579 103927655 -44855817 - MIR SINE MIR -100 108 35 2372 76 0 3 chr11 103928264 103928554 -44854918 - AluSx SINE Alu -20 292 4 240 240 118 0 chr11 103928655 103928747 -44854725 - MIR3 SINE MIR -116 92 1 344 288 30 62 chr11 103929041 103929271 -44854201 + MIR SINE MIR 43 262 0 459 344 67 39 chr11 103932019 103932301 -44851171 + L2 LINE L2 2979 3268 -4 395 203 24 65 chr11 103932966 103933089 -44850383 + MER53 DNA DNA 9 126 -63 515 107 36 12 chr11 103933235 103933319 -44850153 + MER53 DNA DNA 93 178 -11 495 158 30 40 chr11 103933238 103933339 -44850133 - MER53 DNA DNA -88 101 2 * 2253 87 17 0 chr11 103935053 103935351 -44848121 + AluSp SINE Alu 1 303 -10 266 119 24 0 chr11 103935354 103935396 -44848076 - L2 LINE L2 -74 3239 3197 325 256 212 22 chr11 103936091 103936228 -44847244 - MIR3 SINE MIR -36 172 10 2028 123 6 46 chr11 103936470 103936795 -44846677 - AluSq SINE Alu -1 312 1 585 214 30 15 chr11 103936888 103937019 -44846453 - MIR3 SINE MIR -1 207 75 1201 276 95 40 chr11 103937584 103937839 -44845633 - L1ME4a LINE L1 -11 6110 5871 933 225 11 21 chr11 103937839 103938026 -44845446 - MER5A DNA MER1_type -1 188 4 1201 276 95 40 chr11 103938026 103938164 -44845308 - L1ME4a LINE L1 -250 5871 5742 303 120 0 0 chr11 103938164 103938214 -44845258 - L1MB7 LINE L1 0 6184 6135 1201 276 95 40 chr11 103938214 103938543 -44844929 - L1ME4a LINE L1 -379 5742 5347 576 124 0 0 chr11 103938692 103938797 -44844675 + (TC)n Simple_repeat Simple_repeat 2 106 0 318 26 0 0 chr11 103938797 103938836 -44844636 + (CA)n Simple_repeat Simple_repeat 1 39 0 295 330 115 45 chr11 103939515 103940212 -44843260 + L2 LINE L2 2140 2885 -429 309 246 158 26 chr11 103940347 103940461 -44843011 - L2 LINE L2 0 3313 3185 721 262 95 9 chr11 103940668 103940889 -44842583 + MIR SINE MIR 3 242 -20 426 296 118 6 chr11 103941078 103941247 -44842225 - MER5A DNA MER1_type 0 189 2 236 246 164 9 chr11 103941621 103941731 -44841741 + MIR3 SINE MIR 67 193 -15 2253 105 0 0 chr11 103942279 103942573 -44840899 - AluSc SINE Alu -15 294 1 2416 61 0 7 chr11 103943342 103943636 -44839836 - AluY SINE Alu -19 292 1 364 262 0 10 chr11 103944712 103944815 -44838657 + L2 LINE L2 3212 3313 0 2101 110 4 0 chr11 103946996 103947303 -44836169 - AluSx SINE Alu 0 308 1 1960 105 0 48 chr11 103948203 103948522 -44834950 - AluSx SINE Alu 0 305 1 309 341 32 32 chr11 103948671 103948828 -44834644 - MIR SINE MIR -61 147 41 220 284 0 40 chr11 103948949 103949023 -44834449 - MIR SINE MIR -12 250 180 340 359 39 0 chr11 103949529 103949632 -44833840 - L2 LINE L2 -23 3249 3143 333 0 0 0 chr11 103950537 103950574 -44832898 + (TG)n Simple_repeat Simple_repeat 2 38 0 25 0 0 0 chr11 103950637 103950662 -44832810 + AT_rich Low_complexity Low_complexity 1 25 0 1943 265 88 16 chr11 103952802 103953356 -44830116 + MLT1G1 LTR MaLR 1 594 -1 3486 46 6 71 chr11 103953358 103953837 -44829635 - LTR7 LTR ERV1 -2 448 1 284 232 0 0 chr11 103954908 103954964 -44828508 - L2 LINE L2 -7 3306 3251 563 271 103 5 chr11 103955142 103955345 -44828127 - MIR SINE MIR -6 256 34 2345 101 3 3 chr11 103955531 103955839 -44827633 - AluSx SINE Alu -4 308 1 282 193 0 0 chr11 103955929 103955986 -44827486 + CT-rich Low_complexity Low_complexity 1 57 0 1700 149 3 43 chr11 103955987 103956289 -44827183 - AluJo SINE Alu -22 290 1 404 155 42 0 chr11 103956305 103956376 -44827096 - L1MC2 LINE L1 -18 6326 6253 2186 97 4 0 chr11 103956740 103957046 -44826426 + AluSg SINE Alu 1 307 0 2194 84 3 16 chr11 103957152 103957460 -44826012 - AluY SINE Alu -7 304 1 389 195 24 0 chr11 103958154 103958236 -44825236 + MER5A DNA MER1_type 26 109 -80 342 291 189 0 chr11 103958471 103958619 -44824853 + MER5A DNA MER1_type 10 185 -4 2363 86 3 0 chr11 103958873 103959164 -44824308 + AluSp SINE Alu 1 292 -21 615 262 74 20 chr11 103959212 103959414 -44824058 - MIR SINE MIR -39 223 11 2083 93 46 0 chr11 103960092 103960372 -44823100 + AluSc SINE Alu 1 293 -16 416 279 117 35 chr11 103962775 103962972 -44820500 - MIR SINE MIR -31 231 19 993 279 75 107 chr11 103962985 103963730 -44819742 + L3 LINE CR1 517 1237 -340 2308 94 0 7 chr11 103963748 103964056 -44819416 + AluSc SINE Alu 1 306 -3 1791 92 11 25 chr11 103964058 103964342 -44819130 + AluY SINE Alu 1 280 -31 1228 285 52 19 chr11 103964443 103964937 -44818535 - L2 LINE L2 -30 3283 2772 24 32 0 0 chr11 103964958 103964989 -44818483 + AT_rich Low_complexity Low_complexity 1 31 0 2397 73 0 0 chr11 103965355 103965641 -44817831 - AluY SINE Alu -25 286 1 21 89 0 0 chr11 103965728 103965784 -44817688 + AT_rich Low_complexity Low_complexity 1 56 0 438 236 93 7 chr11 103966224 103966364 -44817108 + MER103 DNA DNA 1 152 -14 22 35 0 0 chr11 103966511 103966540 -44816932 + AT_rich Low_complexity Low_complexity 1 29 0 193 228 22 76 chr11 103966572 103966664 -44816808 + MIR3 SINE MIR 121 207 -1 15229 127 28 35 chr11 103967200 103968182 -44815290 + Tigger1 DNA MER2_type 2 990 -1428 2366 82 0 0 chr11 103968182 103968476 -44814996 - AluY SINE Alu -17 294 1 15229 127 28 35 chr11 103968476 103968941 -44814531 + Tigger1 DNA MER2_type 990 1457 -961 2175 112 7 7 chr11 103968941 103969245 -44814227 + AluSx SINE Alu 1 304 -8 15229 127 28 35 chr11 103969245 103970232 -44813240 + Tigger1 DNA MER2_type 1457 2418 0 188 268 0 56 chr11 103970261 103970332 -44813140 - MIR SINE MIR -48 214 148 635 167 19 0 chr11 103970344 103970452 -44813020 - FLAM_A SINE Alu -32 110 1 455 209 78 23 chr11 103970457 103970586 -44812886 - MIR SINE MIR -103 159 24 379 231 54 153 chr11 103970720 103971015 -44812457 - MLT1I LTR MaLR -4 405 140 22 0 0 0 chr11 103971717 103971739 -44811733 + AT_rich Low_complexity Low_complexity 1 22 0 232 138 0 69 chr11 103971850 103971908 -44811564 + (TTTTTA)n Simple_repeat Simple_repeat 2 55 0 308 336 55 43 chr11 103973097 103973332 -44810140 + L1MC/D LINE L1 5291 5528 -2280 2301 50 36 7 chr11 103973808 103974109 -44809363 + AluY SINE Alu 1 310 -1 302 240 0 0 chr11 103975293 103975368 -44808104 - L1ME3A LINE L1 -204 5966 5892 2103 103 13 23 chr11 103976568 103976870 -44806602 + AluY SINE Alu 1 299 -12 2280 101 3 3 chr11 103977131 103977429 -44806043 - AluSq SINE Alu -15 298 1 367 300 0 43 chr11 103977627 103977767 -44805705 - L2 LINE L2 0 3313 3180 452 278 47 19 chr11 103978413 103978625 -44804847 - LTR33 LTR ERVL 0 521 304 353 316 90 15 chr11 103978770 103978903 -44804569 - L2 LINE L2 -6 3266 3124 311 276 0 26 chr11 103979227 103979303 -44804169 - MIR SINE MIR -100 108 35 210 315 0 0 chr11 103979827 103979881 -44803591 + L2 LINE L2 3204 3257 -15 190 293 113 66 chr11 103979891 103979997 -44803475 - L2 LINE L2 -3 3269 3159 2147 106 7 14 chr11 103980828 103981120 -44802352 + AluSg SINE Alu 4 293 -17 1847 83 17 3 chr11 103983140 103983430 -44800042 + L1PBa LINE L1 1681 1974 -4889 389 331 72 6 chr11 103983475 103983641 -44799831 + MER5A DNA MER1_type 6 182 -7 729 107 0 8 chr11 103983864 103984132 -44799340 + AluSx SINE Alu 1 330 0 2168 92 3 14 chr11 103984607 103984919 -44798553 - AluSx SINE Alu 0 313 5 494 289 76 35 chr11 103985059 103985256 -44798216 + MIR SINE MIR 48 252 -10 21 0 0 0 chr11 103985258 103985279 -44798193 + AT_rich Low_complexity Low_complexity 1 21 0 201 326 34 97 chr11 103985886 103986153 -44797319 - L2 LINE L2 -3 3269 3020 199 336 202 28 chr11 103986401 103986623 -44796849 - L2 LINE L2 -643 2671 2489 441 0 0 0 chr11 103986623 103986672 -44796800 + (TG)n Simple_repeat Simple_repeat 1 49 0 199 336 202 28 chr11 103986672 103986984 -44796488 - L2 LINE L2 -825 2489 2044 273 95 0 0 chr11 103986994 103987036 -44796436 - MADE1 DNA Mariner -38 42 1 358 299 61 24 chr11 103987368 103987557 -44795915 + MIR3 SINE MIR 8 203 -5 * 516 316 42 6 chr11 103987550 103987718 -44795754 - MIR SINE MIR -68 194 21 186 167 0 0 chr11 103988590 103988626 -44794846 + (TA)n Simple_repeat Simple_repeat 1 36 0 455 288 71 25 chr11 103988799 103988997 -44794475 + MIR SINE MIR 11 217 -45 221 341 78 93 chr11 103991160 103991570 -44791902 - L2 LINE L2 -33 3239 2836 1122 120 5 21 chr11 103993260 103993451 -44790021 - MER53 DNA DNA -1 188 1 180 357 31 20 chr11 103993812 103993910 -44789562 + L2 LINE L2 2978 3076 -196 254 301 62 26 chr11 103994034 103994147 -44789325 + MIR SINE MIR 9 125 -137 1935 158 0 0 chr11 103994161 103994445 -44789027 - AluSg SINE Alu -26 284 1 187 319 111 0 chr11 103995467 103995539 -44787933 + L2 LINE L2 3234 3313 0 192 107 0 0 chr11 103995547 103995575 -44787897 - L2 LINE L2 -4 3309 3282 189 0 0 0 chr11 103996211 103996232 -44787240 + (T)n Simple_repeat Simple_repeat 1 21 0 2889 218 89 16 chr11 103996742 103997622 -44785850 + Zaphod DNA AcHobo 44 987 -3044 1671 187 63 7 chr11 103997629 103998041 -44785431 + Zaphod DNA AcHobo 3589 4023 -8 823 142 59 24 chr11 103998092 103998261 -44785211 - L1PA15 LINE L1 -5 6160 5986 396 276 171 15 chr11 103998546 103998745 -44784727 + MIR SINE MIR 31 260 -2 215 321 40 139 chr11 103998996 103999298 -44784174 + L2 LINE L2 2997 3268 -4 1162 204 154 19 chr11 103999583 104000064 -44783408 + MLT1F LTR MaLR 3 535 -7 2045 139 0 3 chr11 104000067 104000362 -44783110 + AluSx SINE Alu 1 294 -18 229 330 83 9 chr11 104000538 104000647 -44782825 - L2 LINE L2 -8 3305 3189 316 360 82 14 chr11 104001570 104001717 -44781755 + L2 LINE L2 2904 3060 -212 271 254 108 54 chr11 104001838 104002023 -44781449 + L2 LINE L2 3119 3313 0 636 265 34 60 chr11 104002030 104002298 -44781174 + MIR SINE MIR 2 262 0 1502 177 4 4 chr11 104002337 104002597 -44780875 + AluJb SINE Alu 1 260 -52 221 364 55 0 chr11 104005795 104005905 -44777567 + L2 LINE L2 3195 3310 -3 2421 57 0 10 chr11 104006989 104007289 -44776183 - AluY SINE Alu -14 297 1 1778 167 0 26 chr11 104007918 104008229 -44775243 - AluJo SINE Alu -9 303 1 217 206 44 0 chr11 104008351 104008419 -44775053 + GA-rich Low_complexity Low_complexity 3 73 0 2311 99 3 0 chr11 104008720 104009024 -44774448 + AluSp SINE Alu 1 305 -8 264 204 0 0 chr11 104009119 104009173 -44774299 + CT-rich Low_complexity Low_complexity 1 54 0 1181 183 0 27 chr11 104009742 104009966 -44773506 + MER58A DNA MER1_type 7 224 0 471 264 40 40 chr11 104010003 104010151 -44773321 + MIR3 SINE MIR 30 177 -31 193 292 15 62 chr11 104012052 104012117 -44771355 + L2 LINE L2 3240 3301 -12 2395 35 3 3 chr11 104014807 104015089 -44768383 + AluY SINE Alu 17 298 -13 223 342 58 17 chr11 104015222 104015342 -44768130 + L3 LINE CR1 1431 1555 -22 193 262 0 0 chr11 104015779 104015821 -44767651 + L3 LINE CR1 1534 1575 -2 2244 110 0 7 chr11 104016389 104016689 -44766783 + AluSg SINE Alu 1 298 -12 216 0 0 0 chr11 104018497 104018521 -44764951 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 396 319 129 64 chr11 104020950 104021276 -44762196 - L2 LINE L2 -29 3243 2897 345 292 36 22 chr11 104021350 104021487 -44761985 - L2 LINE L2 -556 2758 2620 * 490 303 103 67 chr11 104021483 104021813 -44761659 - L3 LINE CR1 -92 1485 1144 210 372 41 14 chr11 104021824 104021969 -44761503 - L3 LINE CR1 -408 1169 1021 1122 238 92 60 chr11 104022032 104022219 -44761253 + MLT1J LTR MaLR 27 207 -304 2318 98 0 7 chr11 104022219 104022526 -44760946 + AluSg1 SINE Alu 1 305 -4 1122 238 92 60 chr11 104022526 104022808 -44760664 + MLT1J LTR MaLR 207 511 0 264 258 0 16 chr11 104024559 104024621 -44758851 + GA-rich Low_complexity Low_complexity 3 63 0 2237 92 0 3 chr11 104024941 104025234 -44758238 + AluY SINE Alu 1 292 -19 2282 76 0 54 chr11 104025356 104025672 -44757800 + AluY SINE Alu 1 299 -12 2262 101 3 3 chr11 104025933 104026231 -44757241 - AluSq SINE Alu -15 298 1 528 299 0 0 chr11 104026426 104026560 -44756912 - L2 LINE L2 0 3313 3180 476 268 47 24 chr11 104027204 104027417 -44756055 - LTR33 LTR ERVL 0 521 304 353 316 90 15 chr11 104027562 104027695 -44755777 - L2 LINE L2 -6 3266 3124 311 276 0 26 chr11 104028019 104028095 -44755377 - MIR SINE MIR -100 108 35 208 315 0 0 chr11 104028619 104028673 -44754799 + L2 LINE L2 3204 3257 -15 189 293 113 66 chr11 104028683 104028789 -44754683 - L2 LINE L2 -3 3269 3159 2173 95 0 14 chr11 104029623 104029917 -44753555 + AluSg SINE Alu 4 293 -17 1966 79 17 3 chr11 104031938 104032228 -44751244 + L1PBa LINE L1 1681 1974 -4889 390 331 72 6 chr11 104032273 104032439 -44751033 + MER5A DNA MER1_type 6 182 -7 717 107 0 8 chr11 104032662 104032930 -44750542 + AluSx SINE Alu 1 330 0 2167 92 3 14 chr11 104033406 104033718 -44749754 - AluSx SINE Alu 0 313 5 504 289 76 35 chr11 104033858 104034055 -44749417 + MIR SINE MIR 48 252 -10 21 0 0 0 chr11 104034057 104034078 -44749394 + AT_rich Low_complexity Low_complexity 1 21 0 203 326 34 97 chr11 104034685 104034952 -44748520 - L2 LINE L2 -3 3269 3020 333 0 0 0 chr11 104035425 104035462 -44748010 + (TG)n Simple_repeat Simple_repeat 2 38 0 287 95 0 0 chr11 104035789 104035831 -44747641 - MADE1 DNA Mariner -38 42 1 352 299 61 24 chr11 104036163 104036352 -44747120 + MIR3 SINE MIR 8 203 -5 * 493 302 41 12 chr11 104036345 104036514 -44746958 - MIR SINE MIR -68 194 21 186 167 0 0 chr11 104037387 104037423 -44746049 + (TA)n Simple_repeat Simple_repeat 1 36 0 458 288 71 25 chr11 104037596 104037794 -44745678 + MIR SINE MIR 11 217 -45 187 341 78 93 chr11 104039958 104040368 -44743104 - L2 LINE L2 -33 3239 2836 1144 120 5 21 chr11 104042058 104042249 -44741223 - MER53 DNA DNA -1 188 1 247 301 62 26 chr11 104042832 104042945 -44740527 + MIR SINE MIR 9 125 -137 1913 158 0 0 chr11 104042959 104043243 -44740229 - AluSg SINE Alu -26 284 1 188 319 111 0 chr11 104044265 104044337 -44739135 + L2 LINE L2 3234 3313 0 194 107 0 0 chr11 104044345 104044373 -44739099 - L2 LINE L2 -4 3309 3282 22 0 0 0 chr11 104045009 104045031 -44738441 + AT_rich Low_complexity Low_complexity 1 22 0 2668 198 93 18 chr11 104045751 104046473 -44736999 + Zaphod DNA AcHobo 212 987 -3044 1794 189 62 9 chr11 104046480 104046899 -44736573 + Zaphod DNA AcHobo 3589 4029 -2 828 142 59 24 chr11 104046943 104047112 -44736360 - L1PA15 LINE L1 -5 6160 5986 406 285 165 15 chr11 104047398 104047598 -44735874 + MIR SINE MIR 31 260 -2 210 321 40 139 chr11 104047849 104048151 -44735321 + L2 LINE L2 2997 3268 -4 1291 206 154 19 chr11 104048436 104048919 -44734553 + MLT1F LTR MaLR 3 537 -5 1970 146 0 3 chr11 104048920 104049215 -44734257 + AluSx SINE Alu 1 294 -18 188 320 39 62 chr11 104049371 104049499 -44733973 - L2 LINE L2 0 3313 3189 301 360 82 14 chr11 104050422 104050569 -44732903 + L2 LINE L2 2904 3060 -212 186 272 104 58 chr11 104050690 104050863 -44732609 + L2 LINE L2 3119 3299 -14 763 256 85 18 chr11 104052743 104052966 -44730506 - MIR SINE MIR -10 252 15 270 0 0 0 chr11 104053727 104053757 -44729715 + (CA)n Simple_repeat Simple_repeat 2 31 0 396 0 0 0 chr11 104053982 104054026 -44729446 + (CA)n Simple_repeat Simple_repeat 2 45 0 683 197 0 36 chr11 104054114 104054251 -44729221 - FLAM_A SINE Alu -1 132 1 2258 72 0 10 chr11 104054451 104054765 -44728707 + AluY SINE Alu 3 313 0 188 292 167 58 chr11 104056220 104056597 -44726875 + L2 LINE L2 1599 2016 -1298 215 273 109 67 chr11 104056765 104056930 -44726542 + L2 LINE L2 2261 2432 -882 195 274 74 32 chr11 104057322 104057417 -44726055 - MIR SINE MIR -4 258 160 474 172 0 50 chr11 104057507 104057606 -44725866 - MIR SINE MIR -118 144 51 6519 88 15 3 chr11 104057743 104058977 -44724495 + L1PA11 LINE L1 4924 6174 0 204 297 78 0 chr11 104059031 104059095 -44724377 + MIR SINE MIR 193 261 -1 1965 121 0 0 chr11 104060780 104061053 -44722419 + AluSq SINE Alu 40 312 -1 25 31 0 0 chr11 104061224 104061256 -44722216 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr11 104062096 104062120 -44721352 + AT_rich Low_complexity Low_complexity 1 24 0 242 215 92 15 chr11 104062419 104062484 -44720988 - MIR3 SINE MIR -1 207 138 198 0 0 0 chr11 104063415 104063437 -44720035 + (T)n Simple_repeat Simple_repeat 1 22 0 330 350 89 54 chr11 104063438 104063752 -44719720 + L2 LINE L2 2934 3258 -14 1854 115 49 25 chr11 104065384 104065670 -44717802 + AluSg SINE Alu 1 293 -17 198 0 0 0 chr11 104066216 104066238 -44717234 + (T)n Simple_repeat Simple_repeat 1 22 0 236 53 26 0 chr11 104066567 104066605 -44716867 + (TG)n Simple_repeat Simple_repeat 2 40 0 2503 54 0 3 chr11 104066750 104067045 -44716427 + AluY SINE Alu 3 296 -15 239 246 58 43 chr11 104068159 104068228 -44715244 - L2 LINE L2 0 3313 3244 1742 91 40 0 chr11 104068230 104068504 -44714968 + L1MA5A LINE L1 6010 6294 -3 41 36 0 0 chr11 104068504 104068559 -44714913 + AT_rich Low_complexity Low_complexity 1 55 0 2322 249 130 53 chr11 104068630 104069730 -44713742 - L2 LINE L2 -250 3063 1890 470 172 90 66 chr11 104069734 104069856 -44713616 + MER63 DNA MER1_type 1 751 -311 318 228 0 0 chr11 104069857 104069914 -44713558 + MER63 DNA MER1_type 977 1033 -27 988 254 110 12 chr11 104069925 104070244 -44713228 - L2 LINE L2 -1420 1894 1545 913 187 172 0 chr11 104070290 104070368 -44713104 - MER33 DNA MER1_type -2262 323 260 2124 121 10 7 chr11 104070368 104070674 -44712798 + AluSx SINE Alu 2 308 -4 913 187 172 0 chr11 104070674 104070863 -44712609 - MER33 DNA MER1_type -2325 260 10 1185 199 31 83 chr11 104070868 104071254 -44712218 - L2 LINE L2 -1831 1483 1118 366 379 53 16 chr11 104072570 104072760 -44710712 + L2 LINE L2 3075 3271 -1 2395 84 0 0 chr11 104072776 104073073 -44710399 + AluSg SINE Alu 1 297 -13 224 209 0 15 chr11 104073917 104073984 -44709488 + (TGGA)n Simple_repeat Simple_repeat 1 66 0 399 268 172 11 chr11 104073984 104074209 -44709263 + MIR SINE MIR 3 262 0 2301 68 41 0 chr11 104074838 104075132 -44708340 + AluY SINE Alu 1 306 -5 264 59 0 0 chr11 104075709 104075743 -44707729 + (TG)n Simple_repeat Simple_repeat 2 35 0 1165 183 28 0 chr11 104077170 104077383 -44706089 - MER20 DNA MER1_type 0 219 1 375 23 0 0 chr11 104078191 104078235 -44705237 + (T)n Simple_repeat Simple_repeat 1 44 0 225 0 0 0 chr11 104078244 104078261 -44705211 + (G)n Simple_repeat Simple_repeat 1 42 0 225 0 0 0 chr11 104078261 104078286 -44705186 + (G)n Simple_repeat Simple_repeat 1 25 0 2005 75 71 4 chr11 104078400 104078667 -44704805 - AluSq SINE Alu -26 287 3 1298 157 25 8 chr11 104078671 104078906 -44704566 + L1MA4A LINE L1 6065 6303 0 2315 90 27 0 chr11 104080569 104080868 -44702604 + AluY SINE Alu 1 307 -4 917 269 57 9 chr11 104080944 104081315 -44702157 + L1ME4a LINE L1 5663 6051 -70 2243 97 3 3 chr11 104081756 104082067 -44701405 + AluY SINE Alu 1 311 0 191 313 18 71 chr11 104082212 104082324 -44701148 - MIR SINE MIR -73 189 84 394 274 171 6 chr11 104082354 104082518 -44700954 - MIR SINE MIR -25 237 47 198 163 0 82 chr11 104083100 104083149 -44700323 + L2 LINE L2 3264 3308 -5 1493 255 97 10 chr11 104083841 104084351 -44699121 - L2 LINE L2 -14 3299 2751 2957 86 16 5 chr11 104084351 104084722 -44698750 - THE1C LTR MaLR 0 375 1 520 105 0 12 chr11 104084722 104084808 -44698664 - THE1C-int LTR MaLR 0 1580 1496 2033 163 43 36 chr11 104084833 104085380 -44698092 - MLT2A2 LTR ERVL 0 554 1 1773 227 188 29 chr11 104085380 104085530 -44697942 - L2 LINE L2 -559 2755 2630 2191 113 0 3 chr11 104085530 104085823 -44697649 + AluSg SINE Alu 1 292 -18 1773 227 188 29 chr11 104085823 104086328 -44697144 - L2 LINE L2 -684 2630 1996 1798 172 3 7 chr11 104086328 104086624 -44696848 + AluSx SINE Alu 1 295 -17 255 331 154 22 chr11 104086859 104086995 -44696477 - L3 LINE CR1 -3 1574 1421 2819 115 0 0 chr11 104087195 104087559 -44695913 - THE1B LTR MaLR 0 364 1 1699 154 20 40 chr11 104087647 104087946 -44695526 - AluJo SINE Alu -19 293 1 219 36 0 0 chr11 104088664 104088692 -44694780 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 2448 76 0 3 chr11 104089549 104089850 -44693622 - AluY SINE Alu -11 300 1 4562 123 62 43 chr11 104089912 104090682 -44692790 - LTR1 LTR ERV1 0 785 1 304 296 37 70 chr11 104092144 104092371 -44691101 - MIR3 SINE MIR -46 216 2 2186 77 0 7 chr11 104093400 104093674 -44689798 + AluY SINE Alu 28 299 -12 451 323 0 8 chr11 104093978 104094102 -44689370 - MER5A DNA MER1_type -1 188 66 199 248 28 92 chr11 104094347 104094456 -44689016 - MIR SINE MIR -84 178 77 2631 108 95 23 chr11 104094712 104095111 -44688361 - MSTC LTR MaLR 0 428 1 322 316 127 19 chr11 104098698 104098856 -44684616 - L2 LINE L2 0 3272 3098 191 233 0 0 chr11 104099431 104099474 -44683998 - L2 LINE L2 0 3313 3271 204 226 170 0 chr11 104099841 104099894 -44683578 + MIR SINE MIR 25 86 -176 2440 85 0 0 chr11 104099971 104100277 -44683195 + AluSq SINE Alu 1 306 -7 200 114 0 29 chr11 104100728 104100763 -44682709 + (TTTC)n Simple_repeat Simple_repeat 4 37 0 714 314 130 50 chr11 104103298 104104396 -44679076 + L2 LINE L2 1695 2880 -434 254 257 110 99 chr11 104104497 104104572 -44678900 + MIR SINE MIR 21 94 -157 1479 183 46 7 chr11 104104572 104104857 -44678615 - AluJo SINE Alu -16 296 1 254 257 110 99 chr11 104104857 104104943 -44678529 + MIR SINE MIR 94 189 -62 760 230 60 25 chr11 104104946 104105146 -44678326 - MIR SINE MIR 0 262 56 4474 188 30 19 chr11 104105289 104106134 -44677338 - MER21B LTR ERV1 -9 854 1 657 337 32 12 chr11 104106141 104106390 -44677082 - MIR SINE MIR -7 255 2 259 253 13 38 chr11 104108748 104108842 -44674630 + CT-rich Low_complexity Low_complexity 5 154 0 246 276 56 41 chr11 104109171 104109367 -44674105 - L1ME4a LINE L1 -9 6112 5914 398 273 81 120 chr11 104109367 104109774 -44673698 - L2 LINE L2 -69 3244 2854 2405 90 0 0 chr11 104111302 104111613 -44671859 - AluY SINE Alu 0 311 1 191 211 0 0 chr11 104111708 104111746 -44671726 + L2 LINE L2 3273 3310 -3 260 315 176 18 chr11 104111951 104112116 -44671356 - MIR SINE MIR -52 210 20 1607 189 6 16 chr11 104112562 104112874 -44670598 + AluJb SINE Alu 1 309 -3 212 57 0 29 chr11 104112988 104113001 -44670471 + (CAA)n Simple_repeat Simple_repeat 3 15 -21 2430 95 0 0 chr11 104113001 104113307 -44670165 + AluSx SINE Alu 1 306 -6 212 57 0 29 chr11 104113307 104113328 -44670144 + (CAA)n Simple_repeat Simple_repeat 15 36 0 775 155 0 39 chr11 104113679 104113808 -44669664 + AluJo SINE Alu 11 134 -178 272 288 32 48 chr11 104113987 104114112 -44669360 - L2 LINE L2 -10 3303 3181 403 306 162 9 chr11 104115616 104115838 -44667634 + MIR SINE MIR 2 257 -5 460 237 76 6 chr11 104115848 104116061 -44667411 + ORSL DNA AcHobo 15 274 -1 373 274 104 30 chr11 104116845 104116980 -44666492 - MIR3 SINE MIR -24 184 40 611 248 39 91 chr11 104117036 104117290 -44666182 + MIR SINE MIR 21 261 -1 356 274 145 73 chr11 104117818 104118176 -44665296 - MLT1K LTR MaLR -4 584 201 591 273 68 6 chr11 104118509 104118685 -44664787 + MIR SINE MIR 70 256 -6 636 241 148 5 chr11 104119143 104119346 -44664126 - MIR SINE MIR -14 248 17 743 127 0 52 chr11 104121339 104121569 -44661903 + (CAG)n Simple_repeat Simple_repeat 1 218 0 194 333 0 0 chr11 104122041 104122092 -44661380 - L2 LINE L2 -2 3270 3220 224 308 22 22 chr11 104122327 104122418 -44661054 - L2 LINE L2 -181 3091 3001 393 305 57 0 chr11 104123090 104123231 -44660241 + MIR SINE MIR 49 197 -65 327 272 37 0 chr11 104123556 104123637 -44659835 - MIR SINE MIR -81 181 98 557 324 46 13 chr11 104123903 104124244 -44659228 - MARNA DNA Mariner -26 560 167 350 264 224 8 chr11 104126468 104126593 -44656879 - MIR SINE MIR -103 159 8 295 267 0 23 chr11 104126869 104126955 -44656517 - L2 LINE L2 0 3313 3230 264 211 0 0 chr11 104127329 104127381 -44656091 - L2 LINE L2 0 3313 3262 824 280 23 110 chr11 104129188 104129891 -44653581 + L2 LINE L2 2626 3263 -9 227 263 74 21 chr11 104131268 104131363 -44652109 + L2 LINE L2 3102 3201 -71 197 308 90 26 chr11 104131447 104131525 -44651947 + L2 LINE L2 3147 3229 -43 204 225 0 0 chr11 104131548 104131588 -44651884 + GA-rich Low_complexity Low_complexity 2 41 0 28 71 0 0 chr11 104131657 104131713 -44651759 + AT_rich Low_complexity Low_complexity 1 56 0 342 293 50 77 chr11 104131742 104131923 -44651549 + MIR SINE MIR 81 256 -6 1348 279 139 22 chr11 104133153 104133920 -44649552 - HAL1 LINE L1 0 2507 1651 401 291 256 6 chr11 104133975 104134147 -44649325 - MIR SINE MIR -12 250 36 2294 110 7 0 chr11 104136080 104136381 -44647091 + AluSx SINE Alu 1 303 -9 378 0 0 0 chr11 104137126 104137168 -44646304 + (TG)n Simple_repeat Simple_repeat 1 42 0 242 278 0 0 chr11 104137859 104137913 -44645559 + L2 LINE L2 2992 3045 -227 231 259 71 12 chr11 104137987 104138072 -44645400 + L2 LINE L2 3222 3311 -2 231 313 98 0 chr11 104139345 104139457 -44644015 + MIR3 SINE MIR 73 195 -13 2386 77 7 0 chr11 104139993 104140290 -44643182 + AluY SINE Alu 13 311 0 2815 178 43 0 chr11 104142766 104143273 -44640199 - MER52A LTR ERV1 0 1755 1227 2177 60 4 0 chr11 104143280 104143548 -44639924 - AluY SINE Alu -1 310 42 234 0 0 0 chr11 104143548 104143574 -44639898 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2304 78 0 3 chr11 104143574 104143856 -44639616 - AluSc SINE Alu -28 281 1 1749 164 10 19 chr11 104143897 104144207 -44639265 - AluJb SINE Alu -5 307 1 243 229 9 29 chr11 104144263 104144368 -44639104 + GA-rich Low_complexity Low_complexity 2 104 0 1605 174 10 32 chr11 104144371 104144682 -44638790 + AluJo SINE Alu 1 304 -8 467 288 77 6 chr11 104145864 104146034 -44637438 - MIR3 SINE MIR -7 201 20 439 224 36 151 chr11 104146195 104146387 -44637085 - MER91A DNA MER1_type -26 170 1 228 205 0 0 chr11 104146845 104146884 -44636588 + L2 LINE L2 3254 3292 -21 2149 119 7 3 chr11 104148308 104148610 -44634862 + AluSx SINE Alu 2 304 -8 2150 90 9 50 chr11 104148931 104149078 -44634394 + AluSp SINE Alu 1 152 -161 2457 60 0 10 chr11 104149078 104149376 -44634096 + AluY SINE Alu 5 299 -12 2150 90 9 50 chr11 104149376 104149550 -44633922 + AluSp SINE Alu 152 309 -4 401 291 67 18 chr11 104149623 104149788 -44633684 + L2 LINE L2 2864 3036 -277 241 130 0 37 chr11 104149791 104149845 -44633627 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 1779 128 81 34 chr11 104149845 104150143 -44633329 - AluSx SINE Alu 0 312 1 1770 224 19 46 chr11 104150195 104150562 -44632910 + L1ME3A LINE L1 5666 6016 -154 2360 102 0 0 chr11 104150562 104150867 -44632605 - AluSx SINE Alu -7 305 1 1770 224 19 46 chr11 104150867 104151018 -44632454 + L1ME3A LINE L1 6016 6170 0 332 223 218 40 chr11 104151022 104151224 -44632248 + L2 LINE L2 3075 3312 -1 2383 80 0 20 chr11 104151369 104151671 -44631801 - AluY SINE Alu -11 300 5 477 139 0 18 chr11 104151676 104151767 -44631705 - L1M3 LINE L1 -499 5672 5584 46225 78 6 4 chr11 104151785 104153076 -44630396 - HERVK22 LTR ERVK -913 5924 4638 2291 68 4 0 chr11 104153076 104153386 -44630086 + AluY SINE Alu 1 311 0 46225 78 6 4 chr11 104153386 104158003 -44625469 - HERVK22 LTR ERVK -2199 4638 1 2451 171 90 29 chr11 104158003 104158483 -44624989 - LTR22 LTR ERVK 0 509 1 4870 221 79 32 chr11 104158483 104160367 -44623105 - L1 LINE L1 -2721 3249 1454 2318 189 52 2 chr11 104160367 104160775 -44622697 + MSTA LTR MaLR 1 428 0 4870 221 79 32 chr11 104160775 104161065 -44622407 - L1 LINE L1 -4516 1454 1179 2079 130 7 3 chr11 104161065 104161358 -44622114 - AluSq SINE Alu -19 294 1 4870 221 79 32 chr11 104161358 104161610 -44621862 - L1 LINE L1 -4791 1179 392 256 271 29 0 chr11 104161722 104161792 -44621680 - L1 LINE L1 -5524 367 296 1813 179 3 0 chr11 104162001 104162303 -44621169 - AluJb SINE Alu -9 303 1 317 296 125 0 chr11 104162573 104162749 -44620723 - L1M4 LINE L1 -2685 3461 3264 6161 124 23 10 chr11 104162750 104162985 -44620487 - L1MA4A LINE L1 -1 6302 6071 1872 150 28 0 chr11 104162985 104163272 -44620200 - AluSx SINE Alu -17 295 1 6161 124 23 10 chr11 104163272 104164003 -44619469 - L1MA4A LINE L1 -228 6075 5323 1927 127 7 27 chr11 104164003 104164302 -44619170 - AluSx SINE Alu -19 293 1 2202 107 7 3 chr11 104164309 104164598 -44618874 - AluSx SINE Alu -21 291 2 228 205 0 0 chr11 104166023 104166062 -44617410 - L2 LINE L2 -21 3292 3254 191 170 43 43 chr11 104166108 104166155 -44617317 + L2 LINE L2 3267 3313 0 26 0 0 0 chr11 104166693 104166719 -44616753 + GC_rich Low_complexity Low_complexity 1 26 0 234 0 0 0 chr11 104166730 104166756 -44616716 + (A)n Simple_repeat Simple_repeat 1 26 0 241 215 92 15 chr11 104167863 104167928 -44615544 + MIR3 SINE MIR 138 207 -1 24 0 0 0 chr11 104168227 104168251 -44615221 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr11 104169091 104169123 -44614349 + AT_rich Low_complexity Low_complexity 1 32 0 1965 124 0 0 chr11 104169294 104169568 -44613904 - AluSq SINE Alu 0 313 40 7019 86 25 11 chr11 104171370 104172604 -44610868 - L1PA11 LINE L1 0 6174 4924 475 172 0 50 chr11 104172741 104172840 -44610632 + MIR SINE MIR 51 144 -118 206 283 102 66 chr11 104173418 104173584 -44609888 - L2 LINE L2 -882 2432 2261 2501 70 0 0 chr11 104175600 104175901 -44607571 - AluY SINE Alu -10 301 1 1136 205 9 4 chr11 104175970 104176199 -44607273 - AluJb SINE Alu 0 312 83 21 0 0 0 chr11 104177831 104177852 -44605620 + AT_rich Low_complexity Low_complexity 1 21 0 415 311 116 52 chr11 104178642 104179066 -44604406 + L2 LINE L2 2255 2705 -609 235 340 39 29 chr11 104179183 104179286 -44604186 + L2 LINE L2 2943 3046 -226 703 234 105 0 chr11 104179758 104179929 -44603543 + MER5A DNA MER1_type 1 189 0 1630 161 0 14 chr11 104180316 104180596 -44602876 - AluSq SINE Alu -37 276 1 619 283 44 18 chr11 104181530 104181774 -44601698 - MIR SINE MIR -13 249 2 759 256 85 18 chr11 104183869 104184092 -44599380 - MIR SINE MIR -10 252 15 270 0 0 0 chr11 104184853 104184883 -44598589 + (CA)n Simple_repeat Simple_repeat 2 31 0 323 261 122 84 chr11 104185046 104185110 -44598362 + MER112 DNA MER1_type 3 63 -197 396 0 0 0 chr11 104185110 104185154 -44598318 + (CA)n Simple_repeat Simple_repeat 2 45 0 323 261 122 84 chr11 104185154 104185240 -44598232 + MER112 DNA MER1_type 63 144 -116 794 187 8 22 chr11 104185240 104185374 -44598098 - FLAM_A SINE Alu -1 132 1 323 261 122 84 chr11 104185374 104185460 -44598012 + MER112 DNA MER1_type 144 249 -11 2159 113 10 3 chr11 104185537 104185854 -44597618 + AluSq SINE Alu 1 319 0 2178 117 0 23 chr11 104186467 104186775 -44596697 + AluSx SINE Alu 1 301 -11 637 225 109 55 chr11 104186828 104187175 -44596297 - L1MC5 LINE L1 -48 7913 7548 193 239 22 0 chr11 104187760 104187806 -44595666 - L2 LINE L2 -12 3260 3214 372 161 39 8 chr11 104187826 104187935 -44595537 + (TA)n Simple_repeat Simple_repeat 1 116 -18 2526 53 0 10 chr11 104187935 104188236 -44595236 + AluY SINE Alu 1 298 -13 372 161 39 8 chr11 104188236 104188256 -44595216 + (TA)n Simple_repeat Simple_repeat 116 134 0 304 250 90 20 chr11 104188310 104188410 -44595062 - MIR SINE MIR -122 140 34 380 348 111 36 chr11 104188527 104188588 -44594884 - L2 LINE L2 -2160 1154 1099 975 289 56 37 chr11 104188588 104189069 -44594403 + LTR16C LTR ERVL 2 491 0 380 348 111 36 chr11 104189069 104189843 -44593629 - L2 LINE L2 -2215 1099 256 554 281 182 0 chr11 104190022 104190225 -44593247 + MIR SINE MIR 18 257 -5 446 252 216 7 chr11 104190461 104190600 -44592872 - MER96 DNA MER1_type? -5 170 3 22 0 0 0 chr11 104190847 104190869 -44592603 + AT_rich Low_complexity Low_complexity 1 22 0 293 226 142 28 chr11 104191524 104191630 -44591842 + MLT1K LTR MaLR 7 124 -464 460 300 38 24 chr11 104192046 104192271 -44591201 - L1ME LINE L1 -393 5777 5545 22 0 0 0 chr11 104192726 104192748 -44590724 + AT_rich Low_complexity Low_complexity 1 22 0 2273 174 33 2 chr11 104194316 104194712 -44588760 + L1MC1 LINE L1 5924 6331 -2 202 154 26 0 chr11 104195232 104195271 -44588201 + (TA)n Simple_repeat Simple_repeat 1 40 0 307 239 210 36 chr11 104197924 104198062 -44585410 + L2 LINE L2 3152 3313 0 403 317 21 14 chr11 104198690 104198835 -44584637 - MIR SINE MIR -70 192 47 1657 196 0 16 chr11 104198874 104199180 -44584292 - AluJb SINE Alu -11 301 1 274 240 31 31 chr11 104199898 104199994 -44583478 + MIR SINE MIR 97 192 -70 619 264 137 18 chr11 104200138 104200365 -44583107 - MIR SINE MIR -3 259 6 1995 118 69 3 chr11 104201136 104201425 -44582047 + AluSg SINE Alu 1 308 -2 870 112 8 0 chr11 104201832 104201957 -44581515 - L1MB3 LINE L1 0 6183 6058 587 284 101 23 chr11 104202197 104202415 -44581057 - MIR SINE MIR 0 262 28 345 303 138 13 chr11 104202433 104202585 -44580887 + MER5A DNA MER1_type 19 189 0 250 244 17 92 chr11 104202865 104202984 -44580488 - L2 LINE L2 -1 3312 3203 314 342 0 9 chr11 104202992 104203106 -44580366 + MER5A DNA MER1_type 54 166 -23 262 235 20 0 chr11 104204305 104204356 -44579116 + MER20 DNA MER1_type 5 56 -163 240 356 122 27 chr11 104205411 104205706 -44577766 - L2 LINE L2 -27 3286 2964 397 338 149 20 chr11 104205777 104206073 -44577399 - L2 LINE L2 -462 2852 2519 500 315 63 42 chr11 104207335 104207573 -44575899 - MIR SINE MIR -17 245 3 322 314 25 25 chr11 104207860 104207981 -44575491 + L2 LINE L2 3193 3313 0 2105 238 33 39 chr11 104208079 104208618 -44574854 + MLT1F LTR MaLR 1 536 -6 180 0 0 0 chr11 104211129 104211149 -44572323 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2257 67 20 7 chr11 104211593 104211890 -44571582 + AluY SINE Alu 1 301 -10 202 362 85 0 chr11 104212304 104212398 -44571074 + L2 LINE L2 3203 3304 -9 316 224 86 43 chr11 104212927 104213043 -44570429 - MER117 DNA MER1_type -26 171 51 708 290 65 4 chr11 104213337 104213568 -44569904 + MIR SINE MIR 15 259 -3 264 320 21 41 chr11 104213691 104213788 -44569684 - L2 LINE L2 -9 3263 3169 309 281 106 88 chr11 104215212 104215372 -44568100 + L2 LINE L2 3129 3291 -22 195 204 23 23 chr11 104215438 104215482 -44567990 - MIR3 SINE MIR -14 194 151 387 60 0 0 chr11 104215537 104215587 -44567885 + (TG)n Simple_repeat Simple_repeat 2 51 0 1599 90 132 26 chr11 104215693 104215984 -44567488 + AluSg1 SINE Alu 1 309 0 702 246 27 96 chr11 104216014 104216380 -44567092 - L2 LINE L2 -2 3311 2971 218 319 69 26 chr11 104216378 104216494 -44566978 - MIR3 SINE MIR -52 156 36 * 1767 145 50 20 chr11 104216600 104216897 -44566575 - AluSx SINE Alu -6 306 1 1990 124 0 7 chr11 104216992 104217274 -44566198 + AluSx SINE Alu 1 280 -32 202 188 0 0 chr11 104217308 104217340 -44566132 + (TG)n Simple_repeat Simple_repeat 1 32 0 22 0 0 0 chr11 104217414 104217436 -44566036 + AT_rich Low_complexity Low_complexity 1 22 0 197 378 17 8 chr11 104218766 104218885 -44564587 - MIR SINE MIR -67 141 22 472 269 86 23 chr11 104219475 104219650 -44563822 - MIR SINE MIR -14 248 63 1066 263 146 31 chr11 104219701 104220154 -44563318 - MLT1H LTR MaLR -25 524 20 1784 161 7 3 chr11 104220169 104220468 -44563004 + AluJb SINE Alu 1 300 -12 194 299 73 92 chr11 104220598 104220694 -44562778 + MIR3 SINE MIR 25 118 -90 2124 100 0 63 chr11 104220694 104221013 -44562459 + AluSx SINE Alu 1 299 -13 194 299 73 92 chr11 104221013 104221080 -44562392 + MIR3 SINE MIR 118 185 -23 635 233 129 67 chr11 104223480 104223720 -44559752 - MIR SINE MIR 0 262 8 320 328 74 0 chr11 104223775 104223897 -44559575 + L2 LINE L2 3142 3272 0 270 188 0 31 chr11 104224802 104224866 -44558606 + L3b LINE CR1 1212 1273 -310 263 349 250 10 chr11 104225186 104225378 -44558094 - MIR SINE MIR -12 250 13 228 283 167 7 chr11 104225370 104225508 -44557964 + MIR SINE MIR 97 256 -6 * 197 278 227 0 chr11 104227033 104227130 -44556342 - MIR SINE MIR -70 192 74 197 300 56 33 chr11 104227098 104227188 -44556284 - MIR3 SINE MIR -102 106 15 199 191 118 73 chr11 104227741 104227809 -44555663 - L2 LINE L2 -1 3312 3242 257 299 22 7 chr11 104230659 104230796 -44552676 + (TGG)n Simple_repeat Simple_repeat 2 140 0 242 125 21 0 chr11 104232350 104232398 -44551074 + GA-rich Low_complexity Low_complexity 1 49 0 362 376 84 5 chr11 104233304 104233517 -44549955 + MIR SINE MIR 15 244 -18 275 324 96 2 chr11 104233646 104233807 -44549665 + MIR SINE MIR 30 202 -60 242 284 11 32 chr11 104234433 104234528 -44548944 + MER94 DNA DNA 42 134 0 410 291 96 31 chr11 104235323 104235615 -44547857 + L1MEd LINE L1 562 872 -5247 665 289 113 49 chr11 104235617 104236254 -44547218 + L1MEd LINE L1 2502 3179 -2950 459 350 57 6 chr11 104236446 104236623 -44546849 + MER5A DNA MER1_type 4 189 0 616 269 20 30 chr11 104237060 104237261 -44546211 + MIR SINE MIR 64 262 0 713 172 0 8 chr11 104237321 104237443 -44546029 + FLAM_A SINE Alu 1 121 -12 21 82 0 0 chr11 104237443 104237492 -44545980 + AT_rich Low_complexity Low_complexity 1 49 0 181 336 153 15 chr11 104237884 104238021 -44545451 + L2 LINE L2 2322 2477 -837 237 303 0 0 chr11 104238149 104238215 -44545257 + L2 LINE L2 2693 2758 -556 263 365 119 32 chr11 104238362 104238672 -44544800 + L2 LINE L2 2934 3270 -2 28 61 0 0 chr11 104238699 104238748 -44544724 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr11 104239257 104239285 -44544187 + AT_rich Low_complexity Low_complexity 1 28 0 1967 129 3 14 chr11 104240267 104240561 -44542911 - AluSx SINE Alu -18 294 4 186 103 0 0 chr11 104241244 104241273 -44542199 + (CAT)n Simple_repeat Simple_repeat 2 30 0 1195 125 6 0 chr11 104241299 104241475 -44541997 - AluSc SINE Alu -3 306 130 6312 80 15 0 chr11 104241991 104243185 -44540287 - L1PA11 LINE L1 -3 6171 4987 5614 124 13 0 chr11 104243185 104244048 -44539424 + L1PA11 LINE L1 4100 4973 -1173 418 283 84 12 chr11 104244049 104244215 -44539257 + MIR SINE MIR 34 211 -51 2084 122 0 3 chr11 104244792 104245088 -44538384 + AluY SINE Alu 1 295 -16 16002 30 6 1 chr11 104245088 104247748 -44535724 + L1PA4 LINE L1 3482 6145 -10 2172 127 0 0 chr11 104248133 104248432 -44535040 - AluSx SINE Alu -13 299 1 765 158 23 23 chr11 104248533 104248666 -44534806 + FLAM_A SINE Alu 1 133 0 243 152 0 0 chr11 104249463 104249509 -44533963 + CT-rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr11 104249705 104249728 -44533744 + AT_rich Low_complexity Low_complexity 1 23 0 304 355 129 0 chr11 104252663 104252818 -44530654 - MER5B DNA MER1_type 0 178 4 288 320 157 0 chr11 104253171 104253324 -44530148 + MIR3 SINE MIR 18 194 -14 13519 184 17 6 chr11 104253495 104255849 -44527623 + L1MB7 LINE L1 4 2383 -4466 2756 105 31 37 chr11 104255849 104256499 -44526973 + MER41A LTR ERV1 1 554 0 10609 185 124 14 chr11 104256499 104256581 -44526891 + L1MB7 LINE L1 2380 2452 -4396 192 77 0 0 chr11 104256581 104256607 -44526865 + (CAA)n Simple_repeat Simple_repeat 2 27 0 10609 185 124 14 chr11 104256607 104259625 -44523847 + L1MB7 LINE L1 2452 5832 -1016 2294 84 7 3 chr11 104259627 104259926 -44523546 + AluSx SINE Alu 1 300 -12 190 308 100 85 chr11 104260121 104260251 -44523221 - L2 LINE L2 -8 3264 3133 809 205 95 5 chr11 104260805 104261005 -44522467 - MER20 DNA MER1_type -1 218 1 503 298 110 44 chr11 104261226 104261545 -44521927 - MLT1J2 LTR MaLR -37 413 74 438 267 19 75 chr11 104261681 104261842 -44521630 - MER5B DNA MER1_type -24 154 3 1095 177 82 18 chr11 104261972 104262288 -44521184 + MSTD LTR MaLR 13 396 0 928 231 82 16 chr11 104262288 104262622 -44520850 + MSTD-int LTR MaLR 1 471 -1264 6356 40 19 0 chr11 104262627 104263399 -44520073 - L1PA5 LINE L1 -7 6147 5361 5125 223 70 33 chr11 104263411 104264638 -44518834 + MSTD-int LTR MaLR 464 1735 0 821 232 140 60 chr11 104264640 104264976 -44518496 + MLT1A1 LTR MaLR 3 365 0 220 277 108 0 chr11 104265871 104265936 -44517536 + MIR SINE MIR 77 148 -114 5869 153 14 7 chr11 104265936 104267417 -44516055 + L1PA16 LINE L1 4672 6162 -4 4340 175 30 15 chr11 104267412 104268256 -44515216 + L1MB7 LINE L1 6020 6875 -11 * 28 29 0 0 chr11 104268945 104268980 -44514492 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr11 104270470 104270503 -44512969 + AT_rich Low_complexity Low_complexity 1 33 0 858 125 0 0 chr11 104271393 104271521 -44511951 - L1PA14 LINE L1 -44 6117 5990 23 54 0 0 chr11 104271661 104271698 -44511774 + AT_rich Low_complexity Low_complexity 1 37 0 677 266 90 30 chr11 104272260 104272493 -44510979 - MIR SINE MIR -15 247 1 296 313 52 44 chr11 104272523 104272706 -44510766 - MIR3 SINE MIR -12 196 8 236 302 50 33 chr11 104273080 104273168 -44510304 - L1M4 LINE L1 -1618 4528 4443 2319 96 0 0 chr11 104273168 104273470 -44510002 - AluSq SINE Alu -11 302 1 236 302 50 33 chr11 104273470 104273623 -44509849 - L1M4 LINE L1 -1703 4443 4283 189 0 0 0 chr11 104274100 104274121 -44509351 + (CA)n Simple_repeat Simple_repeat 2 22 0 27 0 0 0 chr11 104276004 104276031 -44507441 + AT_rich Low_complexity Low_complexity 1 27 0 276 230 80 30 chr11 104276335 104276435 -44507037 - L1ME1 LINE L1 -1 6165 6061 234 375 144 21 chr11 104276480 104276965 -44506507 - L2 LINE L2 -957 2357 1813 3477 143 82 2 chr11 104277226 104277861 -44505611 + L1MC2 LINE L1 5635 6320 -24 24 0 0 0 chr11 104278358 104278382 -44505090 + AT_rich Low_complexity Low_complexity 1 24 0 1247 208 58 4 chr11 104278483 104278743 -44504729 + Charlie1a DNA MER1_type 1 274 -1181 3305 168 56 18 chr11 104278844 104279572 -44503900 + Charlie1a DNA MER1_type 681 1436 -19 208 298 9 9 chr11 104279786 104279900 -44503572 + (CAT)n Simple_repeat Simple_repeat 3 116 0 22 35 0 0 chr11 104280044 104280073 -44503399 + AT_rich Low_complexity Low_complexity 1 29 0 902 286 93 54 chr11 104282305 104282809 -44500663 + MARNA DNA Mariner 14 537 -49 615 147 0 20 chr11 104282915 104283017 -44500455 - AluJo SINE Alu -18 294 195 592 127 154 9 chr11 104283025 104283135 -44500337 - AluJo SINE Alu -178 134 9 481 216 10 10 chr11 104283954 104284056 -44499416 - MIR SINE MIR -81 127 26 235 287 35 70 chr11 104285327 104285470 -44498002 - L2 LINE L2 -15 3298 3161 228 205 0 0 chr11 104286308 104286347 -44497125 + C-rich Low_complexity Low_complexity 6 44 0 309 301 61 73 chr11 104287546 104288119 -44495353 + Tigger4(Zombi) DNA MER2_type 943 1455 -1276 23 33 0 0 chr11 104289570 104289600 -44493872 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr11 104289781 104289816 -44493656 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr11 104289979 104290002 -44493470 + AT_rich Low_complexity Low_complexity 1 23 0 1980 88 30 88 chr11 104291977 104292305 -44491167 + AluY SINE Alu 2 310 -1 190 308 100 85 chr11 104292500 104292630 -44490842 - L2 LINE L2 -8 3264 3133 809 205 95 5 chr11 104293184 104293384 -44490088 - MER20 DNA MER1_type -1 218 1 503 298 110 44 chr11 104293605 104293924 -44489548 - MLT1J2 LTR MaLR -37 413 74 438 267 19 75 chr11 104294060 104294221 -44489251 - MER5B DNA MER1_type -24 154 3 1111 181 77 18 chr11 104294351 104294668 -44488804 + MSTD LTR MaLR 13 396 0 928 231 82 16 chr11 104294668 104295002 -44488470 + MSTD-int LTR MaLR 1 471 -1264 6356 40 19 0 chr11 104295007 104295779 -44487693 - L1PA5 LINE L1 -7 6147 5361 5125 223 70 33 chr11 104295791 104297018 -44486454 + MSTD-int LTR MaLR 464 1735 0 821 232 140 60 chr11 104297020 104297356 -44486116 + MLT1A1 LTR MaLR 3 365 0 220 277 108 0 chr11 104298251 104298316 -44485156 + MIR SINE MIR 77 148 -114 5899 153 14 6 chr11 104298316 104299796 -44483676 + L1PA16 LINE L1 4672 6162 -4 4340 175 30 15 chr11 104299791 104300635 -44482837 + L1MB7 LINE L1 5318 6173 -11 * 28 29 0 0 chr11 104301324 104301359 -44482113 + AT_rich Low_complexity Low_complexity 1 35 0 42768 32 21 4 chr11 104302088 104308133 -44475339 - L1PA2 LINE L1 0 6155 3 19406 151 77 29 chr11 104309154 104311178 -44472294 + L1MA3 LINE L1 12 1937 -5787 1142 39 0 0 chr11 104311178 104311306 -44472166 + AluY SINE Alu 66 193 -118 19406 151 77 29 chr11 104311306 104312819 -44470653 + L1MA3 LINE L1 1937 3376 -4348 1981 55 8 0 chr11 104312819 104313055 -44470417 + AluY SINE Alu 67 304 -7 19406 151 77 29 chr11 104313055 104313401 -44470071 + L1MA3 LINE L1 3376 3704 -4020 2415 66 0 10 chr11 104313401 104313705 -44469767 + AluY SINE Alu 1 301 -10 19406 151 77 29 chr11 104313705 104315354 -44468118 + L1MA3 LINE L1 3704 5272 -2452 2011 146 19 26 chr11 104315354 104315731 -44467741 + THE1C LTR MaLR 2 375 0 19406 151 77 29 chr11 104315731 104317409 -44466063 + L1MA3 LINE L1 5272 7724 0 225 0 0 0 chr11 104317412 104317437 -44466035 + (CA)n Simple_repeat Simple_repeat 2 26 0 273 311 14 0 chr11 104317794 104317868 -44465604 - L2 LINE L2 -7 3306 3232 288 314 209 0 chr11 104317963 104318154 -44465318 + L3 LINE CR1 1343 1573 -4 942 159 6 6 chr11 104318260 104318417 -44465055 - MER2 DNA MER2_type -180 165 9 185 278 0 0 chr11 104318428 104318464 -44465008 - L2 LINE L2 -33 3280 3245 2094 103 3 39 chr11 104319821 104320133 -44463339 + AluSq SINE Alu 1 301 -12 1563 195 29 11 chr11 104320511 104320859 -44462613 - L1MC2 LINE L1 0 6344 5991 4218 216 28 35 chr11 104320884 104321009 -44462463 - L1MC2 LINE L1 -859 5287 5163 1896 160 0 0 chr11 104321009 104321314 -44462158 - AluSx SINE Alu 0 306 2 4218 216 28 35 chr11 104321314 104322388 -44461084 - L1MC2 LINE L1 -983 5163 4096 249 33 0 0 chr11 104323121 104323151 -44460321 + (CA)n Simple_repeat Simple_repeat 2 31 0 2381 72 16 0 chr11 104323770 104324076 -44459396 - AluY SINE Alu 0 311 1 201 147 0 0 chr11 104324125 104324159 -44459313 + (T)n Simple_repeat Simple_repeat 1 34 0 2418 87 6 3 chr11 104324162 104324474 -44458998 - AluSq SINE Alu 0 313 1 752 294 156 52 chr11 104325398 104326239 -44457233 + L1ME LINE L1 4407 5334 -812 23 68 0 0 chr11 104326464 104326508 -44456964 + AT_rich Low_complexity Low_complexity 1 44 0 12110 141 12 17 chr11 104326608 104329668 -44453804 + L1PA13 LINE L1 3108 6143 -20 292 272 132 51 chr11 104329699 104329846 -44453626 + L1ME LINE L1 5602 5776 -345 713 151 8 24 chr11 104329846 104329972 -44453500 - L1PA16 LINE L1 -9 6157 6034 292 272 132 51 chr11 104329972 104330059 -44453413 + L1ME LINE L1 5776 5855 -266 5341 147 44 19 chr11 104330959 104331424 -44452048 - L1MA8 LINE L1 0 6291 5839 2272 149 67 15 chr11 104331424 104331827 -44451645 - MSTB LTR MaLR -2 424 1 5341 147 44 19 chr11 104331827 104332912 -44450560 - L1MA8 LINE L1 -452 5839 4703 351 0 0 0 chr11 104332936 104332975 -44450497 + (TG)n Simple_repeat Simple_repeat 2 40 0 195 42 0 0 chr11 104333048 104333072 -44450400 + (CAAAAA)n Simple_repeat Simple_repeat 6 29 0 207 0 0 0 chr11 104333204 104333227 -44450245 + (T)n Simple_repeat Simple_repeat 1 23 0 413 286 54 0 chr11 104333828 104333940 -44449532 - MER5B DNA MER1_type -60 118 1 2178 161 76 2 chr11 104335177 104335574 -44447898 - MSTA LTR MaLR 0 428 3 4708 162 18 2 chr11 104335592 104336415 -44447057 - MSTA-int LTR MaLR -20 1631 796 509 133 0 12 chr11 104336415 104336498 -44446974 - MSTB LTR MaLR -344 82 1 1901 153 0 3 chr11 104337056 104337338 -44446134 + AluSx SINE Alu 20 300 -12 754 297 72 49 chr11 104337601 104338513 -44444959 + L1MEd LINE L1 527 1490 -4820 538 250 19 12 chr11 104338607 104338767 -44444705 + L1ME LINE L1 329 489 -5581 242 280 34 34 chr11 104338879 104338997 -44444475 + L1ME LINE L1 496 613 -5457 251 152 0 45 chr11 104339011 104339077 -44444395 + L1MC4 LINE L1 7974 8036 -6 701 295 70 42 chr11 104339104 104339389 -44444083 - L2 LINE L2 -339 2975 2683 56 29 0 0 chr11 104341780 104341850 -44441622 + AT_rich Low_complexity Low_complexity 1 70 0 655 103 28 19 chr11 104341946 104342053 -44441419 + AluSg/x SINE Alu 181 288 -21 2343 217 45 33 chr11 104342380 104342984 -44440488 - MLT1E3 LTR MaLR 0 624 14 21 36 0 0 chr11 104343029 104343057 -44440415 + AT_rich Low_complexity Low_complexity 1 28 0 212 59 29 0 chr11 104343105 104343139 -44440333 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2064 121 0 0 chr11 104343147 104343420 -44440052 - AluSx SINE Alu -39 273 1 185 329 178 0 chr11 104344437 104344510 -44438962 + MIR SINE MIR 57 142 -120 1479 280 89 25 chr11 104344664 104345320 -44438152 + L2 LINE L2 2520 3219 -94 327 362 80 5 chr11 104345807 104346006 -44437466 + MIR SINE MIR 49 262 0 1484 205 8 72 chr11 104346053 104346228 -44437244 + MLT1A2 LTR MaLR 1 186 -188 1822 170 0 0 chr11 104346228 104346511 -44436961 + AluJb SINE Alu 4 286 -26 1484 205 8 72 chr11 104346511 104346735 -44436737 + MLT1A2 LTR MaLR 186 374 0 347 306 21 141 chr11 104347881 104348264 -44435208 - L2 LINE L2 -40 3232 2896 244 254 56 0 chr11 104348727 104348798 -44434674 + MER110 LTR ERV1 1 75 -416 1491 217 55 11 chr11 104348878 104349049 -44434423 + MER110 LTR ERV1 79 241 -250 248 26 0 53 chr11 104349049 104349087 -44434385 + (CAAAA)n Simple_repeat Simple_repeat 3 38 0 1491 217 55 11 chr11 104349087 104349297 -44434175 + MER110 LTR ERV1 241 477 -14 1700 132 16 85 chr11 104349360 104349723 -44433749 + MER44D DNA MER2_type 2 609 0 474 343 76 45 chr11 104350016 104350546 -44432926 + L2 LINE L2 2731 3272 0 2349 128 0 37 chr11 104350672 104351048 -44432424 - THE1B LTR MaLR -2 362 1 2471 126 25 28 chr11 104351176 104351611 -44431861 - L1PA16 LINE L1 -10 6156 5723 2185 131 66 24 chr11 104352322 104352568 -44430904 + MSTA LTR MaLR 1 272 -156 3452 130 35 31 chr11 104352568 104353176 -44430296 + MER4B LTR ERV1 1 610 0 2185 131 66 24 chr11 104353176 104353340 -44430132 + MSTA LTR MaLR 272 428 0 2714 162 39 25 chr11 104353340 104353903 -44429569 + MSTA-int LTR MaLR 1 571 -1080 1301 158 24 8 chr11 104353902 104354149 -44429323 + MSTA-int LTR MaLR 1401 1651 0 * 2198 139 71 24 chr11 104354149 104354558 -44428914 + MSTA LTR MaLR 1 428 0 293 263 26 18 chr11 104355180 104355294 -44428178 + MLT1J2 LTR MaLR 25 139 -311 548 225 69 76 chr11 104356895 104357171 -44426301 + MLT1I LTR MaLR 136 409 0 180 278 0 56 chr11 104357218 104357272 -44426200 - L2 LINE L2 -78 3194 3144 209 336 34 25 chr11 104358099 104358218 -44425254 + MIR SINE MIR 11 130 -132 258 250 125 18 chr11 104358709 104358821 -44424651 + MLT1K LTR MaLR 455 578 -10 1917 190 46 0 chr11 104359017 104359390 -44424082 - MLT1B LTR MaLR 0 390 1 393 117 0 0 chr11 104360082 104360142 -44423330 + (A)n Simple_repeat Simple_repeat 1 60 0 2376 76 0 7 chr11 104360577 104360879 -44422593 - AluSq SINE Alu -13 300 1 27 49 0 0 chr11 104361094 104361135 -44422337 + AT_rich Low_complexity Low_complexity 1 41 0 385 226 50 104 chr11 104362023 104362327 -44421145 + MLT1I LTR MaLR 115 549 0 198 0 0 0 chr11 104363640 104363662 -44419810 + (T)n Simple_repeat Simple_repeat 1 22 0 25 31 0 0 chr11 104363983 104364015 -44419457 + AT_rich Low_complexity Low_complexity 1 32 0 1954 121 6 69 chr11 104364986 104365318 -44418154 - AluSx SINE Alu -1 311 1 237 426 98 14 chr11 104365670 104365947 -44417525 + L2 LINE L2 2953 3252 -20 240 220 0 17 chr11 104366661 104366720 -44416752 + GA-rich Low_complexity Low_complexity 2 59 0 353 330 31 66 chr11 104366907 104367175 -44416297 - MIR SINE MIR 0 262 6 304 355 129 0 chr11 104367684 104367839 -44415633 - MER5B DNA MER1_type 0 178 4 293 320 157 0 chr11 104368192 104368345 -44415127 + MIR3 SINE MIR 18 194 -14 12740 184 17 6 chr11 104368516 104370872 -44412600 + L1MA4A LINE L1 4 2383 -4466 2689 106 29 35 chr11 104370872 104371522 -44411950 + MER41A LTR ERV1 1 554 0 10744 180 98 17 chr11 104371522 104371604 -44411868 + L1MA4A LINE L1 2380 2454 -4551 192 77 0 0 chr11 104371604 104371630 -44411842 + (CAA)n Simple_repeat Simple_repeat 2 27 0 10744 180 98 17 chr11 104371630 104374650 -44408822 + L1MA4A LINE L1 2454 5935 -1070 2378 90 0 0 chr11 104374650 104374949 -44408523 + AluSx SINE Alu 1 299 -13 10744 180 98 17 chr11 104374949 104376113 -44407359 + L1MA4A LINE L1 5935 7003 -2 370 327 82 0 chr11 104376213 104376372 -44407100 - MIR3 SINE MIR -4 204 33 21 36 0 0 chr11 104377019 104377047 -44406425 + AT_rich Low_complexity Low_complexity 1 28 0 1058 196 4 31 chr11 104377254 104377479 -44405993 + MER20 DNA MER1_type 1 219 0 372 317 14 14 chr11 104378836 104378978 -44404494 + MIR SINE MIR 5 146 -116 342 333 123 31 chr11 104378979 104379134 -44404338 + MIR SINE MIR 2 187 -75 2077 101 0 0 chr11 104379134 104379430 -44404042 - AluY SINE Alu 0 300 5 342 333 123 31 chr11 104379430 104379501 -44403971 + MIR SINE MIR 187 250 -12 197 170 170 0 chr11 104379838 104379891 -44403581 - L3b LINE CR1 -415 1168 1107 325 333 57 60 chr11 104379954 104380323 -44403149 - L3 LINE CR1 -574 1003 636 2520 215 31 7 chr11 104380732 104381277 -44402195 + MER74A LTR ERVL 1 558 0 278 352 47 8 chr11 104382087 104382215 -44401257 + L2 LINE L2 3173 3305 -8 21 0 0 0 chr11 104382399 104382420 -44401052 + AT_rich Low_complexity Low_complexity 1 21 0 534 294 49 57 chr11 104382607 104383001 -44400471 - MLT1L LTR MaLR -18 597 205 1991 120 58 3 chr11 104383001 104383293 -44400179 + AluSg SINE Alu 1 308 -2 29656 100 32 53 chr11 104383303 104389580 -44393892 + L1PA6 LINE L1 8 6467 -2 333 47 0 0 chr11 104389663 104389706 -44393766 + (CA)n Simple_repeat Simple_repeat 2 44 0 948 332 12 15 chr11 104390894 104391304 -44392168 - MLT1I LTR MaLR 0 409 1 267 173 0 0 chr11 104391942 104391994 -44391478 + CT-rich Low_complexity Low_complexity 1 52 0 780 240 29 25 chr11 104392581 104392785 -44390687 + MER63A DNA MER1_type 6 210 0 1236 281 5 33 chr11 104392939 104393359 -44390113 - MLT1I LTR MaLR -1 408 1 2122 110 3 3 chr11 104393522 104393812 -44389660 - AluSx SINE Alu -22 290 1 328 339 23 6 chr11 104393950 104394121 -44389351 + L1ME4a LINE L1 5946 6119 -2 35 24 0 0 chr11 104394125 104394167 -44389305 + AT_rich Low_complexity Low_complexity 1 42 0 242 235 114 53 chr11 104394195 104394327 -44389145 + L1ME4a LINE L1 5968 6107 -14 309 109 0 0 chr11 104394490 104394536 -44388936 + (TA)n Simple_repeat Simple_repeat 2 47 0 2483 116 28 5 chr11 104394541 104394938 -44388534 - MSTA LTR MaLR 0 428 23 616 296 76 38 chr11 104394990 104395254 -44388218 + L2 LINE L2 3009 3282 -31 2827 111 50 5 chr11 104395254 104395694 -44387778 + LTR46 LTR ERV1 1 460 0 3190 135 7 4 chr11 104395694 104396234 -44387238 + LTR46-int LTR ERV1 1 542 -6443 2803 7 0 0 chr11 104396442 104396747 -44386725 + AluY SINE Alu 1 305 -6 37716 126 14 9 chr11 104396827 104403044 -44380428 + LTR46-int LTR ERV1 658 6675 -310 1832 136 16 3 chr11 104403136 104403444 -44380028 + LTR46-int LTR ERV1 6674 6985 0 2133 136 24 118 chr11 104403444 104403952 -44379520 + LTR46 LTR ERV1 1 460 0 185 194 0 0 chr11 104403952 104403988 -44379484 + L2 LINE L2 3278 3313 0 2500 64 0 6 chr11 104404036 104404348 -44379124 + AluY SINE Alu 1 310 -1 581 286 90 48 chr11 104405503 104405793 -44377679 + L2 LINE L2 3012 3313 0 403 262 122 49 chr11 104408039 104408203 -44375269 + MIR SINE MIR 29 204 -58 226 178 55 41 chr11 104408213 104408286 -44375186 + MER103 DNA DNA 93 166 0 23 0 0 0 chr11 104408426 104408449 -44375023 + AT_rich Low_complexity Low_complexity 1 23 0 611 286 60 86 chr11 104408494 104409296 -44374176 - L1MC4 LINE L1 -151 7891 7111 282 277 108 15 chr11 104409979 104410109 -44373363 - LTR33 LTR ERVL -226 295 154 256 359 58 0 chr11 104410109 104410212 -44373260 + L2 LINE L2 3193 3301 -12 4579 14 0 0 chr11 104410309 104410825 -44372647 + L1PA2 LINE L1 5627 6142 -13 231 345 159 35 chr11 104411229 104411455 -44372017 + MIR SINE MIR 3 256 -6 41 36 0 0 chr11 104411492 104411547 -44371925 + AT_rich Low_complexity Low_complexity 1 55 0 445 202 93 17 chr11 104411991 104412624 -44370848 - L1MC2 LINE L1 -1 7766 6119 6192 160 16 8 chr11 104412636 104415683 -44367789 - L1PA13 LINE L1 0 6814 3644 1834 111 61 0 chr11 104415683 104415945 -44367527 - AluSc SINE Alu -6 303 26 6192 160 16 8 chr11 104415945 104417497 -44365975 - L1PA13 LINE L1 -3170 3644 2107 4475 250 94 3 chr11 104417496 104418646 -44364826 - L1PA13 LINE L1 -5532 1255 2 * 288 0 0 0 chr11 104419358 104419390 -44364082 + (TC)n Simple_repeat Simple_repeat 2 33 0 * 432 104 0 0 chr11 104419389 104419456 -44364016 + (TA)n Simple_repeat Simple_repeat 2 68 0 1820 272 65 26 chr11 104420618 104421309 -44362163 + MER69 DNA AcHobo 84 801 -1725 1425 212 96 9 chr11 104421341 104421799 -44361673 + MER69 DNA AcHobo 2017 2514 -12 1739 229 97 12 chr11 104421843 104422350 -44361122 - L1ME1 LINE L1 -5 6161 5612 227 212 212 68 chr11 104422918 104423036 -44360436 + L2 LINE L2 3137 3271 -1 447 134 16 110 chr11 104424080 104424207 -44359265 + L1MA9 LINE L1 6160 6274 -38 18010 186 17 11 chr11 104424234 104426225 -44357247 + L1PA13 LINE L1 1086 3063 -3751 2148 121 0 3 chr11 104426225 104426514 -44356958 + AluSx SINE Alu 1 288 -24 18010 186 17 11 chr11 104426514 104430193 -44353279 + L1PA13 LINE L1 3063 6813 -1 1271 165 11 154 chr11 104430212 104430563 -44352909 + AluJo SINE Alu 2 302 0 191 298 50 66 chr11 104430695 104430816 -44352656 - L2 LINE L2 0 3272 3154 225 351 84 0 chr11 104430864 104430995 -44352477 - MARNA DNA Mariner -396 190 49 197 331 139 20 chr11 104431430 104431581 -44351891 - L2 LINE L2 -1 3312 3144 290 354 89 21 chr11 104431588 104431825 -44351647 + MIR SINE MIR 9 261 -1 399 231 30 30 chr11 104432307 104432441 -44351031 + LTR33A LTR ERVL 1 134 -389 390 261 76 92 chr11 104432510 104432878 -44350594 + LTR33A LTR ERVL 162 523 0 185 295 82 0 chr11 104433204 104433265 -44350207 + MIR SINE MIR 82 147 -61 216 259 49 37 chr11 104433276 104433357 -44350115 + L2 LINE L2 3186 3267 -5 1561 162 15 12 chr11 104634738 104634997 -44148475 - AluJb SINE Alu -26 286 27 966 217 45 149 chr11 104635017 104635769 -44147703 - L1MDb LINE L1 -4988 1421 748 6741 158 48 3 chr11 104635895 104637105 -44146367 + MST-int LTR MaLR 266 1529 -122 855 284 62 18 chr11 104637329 104637670 -44145802 - LTR16B LTR ERVL -74 390 35 1552 200 0 41 chr11 104637765 104638080 -44145392 + AluJo SINE Alu 1 302 -10 523 306 115 4 chr11 104639306 104639541 -44143931 - MIR SINE MIR 0 262 2 214 370 20 62 chr11 104639683 104639829 -44143643 - L2 LINE L2 -8 3264 3125 370 262 49 49 chr11 104640104 104640268 -44143204 + L2 LINE L2 3148 3311 -2 186 302 93 35 chr11 104641572 104641658 -44141814 - L2 LINE L2 -47 3266 3176 2329 110 0 0 chr11 104641739 104642040 -44141432 - AluSx SINE Alu -11 301 1 21 0 0 0 chr11 104642839 104642860 -44140612 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 104643043 104643064 -44140408 + AT_rich Low_complexity Low_complexity 1 21 0 297 318 67 28 chr11 104646186 104646365 -44137107 - LTR50 LTR ERVL -609 186 1 24287 148 13 27 chr11 104646565 104653008 -44130464 - L1PA11 LINE L1 -2 6487 59 374 278 64 7 chr11 104653461 104653634 -44129838 - HERV16 LTR ERVL -421 5233 5091 287 327 31 43 chr11 104653652 104653814 -44129658 - HERV16 LTR ERVL -2091 2905 2746 2298 162 70 48 chr11 104653907 104654407 -44129065 + MER67D LTR ERV1 1 511 -3 616 332 87 18 chr11 104654415 104655179 -44128293 - HERV16 LTR ERVL -3094 2670 1840 362 354 22 62 chr11 104655229 104655732 -44127740 - HERV16 LTR ERVL -4033 1731 1249 255 79 0 0 chr11 104656003 104656041 -44127431 + (CA)n Simple_repeat Simple_repeat 2 39 0 25 51 0 0 chr11 104656775 104656814 -44126658 + AT_rich Low_complexity Low_complexity 1 39 0 260 319 25 25 chr11 104656815 104656975 -44126497 - HAL1b LINE L1 -4 1344 1185 253 321 74 0 chr11 104657269 104657350 -44126122 - L2 LINE L2 0 3313 3227 262 265 98 0 chr11 104657503 104657605 -44125867 - L1M3 LINE L1 -708 5463 5352 214 151 0 38 chr11 104657744 104657797 -44125675 + A-rich Low_complexity Low_complexity 4 54 0 1314 233 68 47 chr11 104657853 104658412 -44125060 - L1ME3A LINE L1 -230 5940 5370 276 317 77 0 chr11 104658413 104658512 -44124960 + MER5A DNA MER1_type 48 143 -35 2080 138 85 13 chr11 104658743 104659191 -44124281 + L1MA4 LINE L1 5821 6300 0 2081 119 0 7 chr11 104659903 104660197 -44123275 - AluSc SINE Alu -17 292 1 1277 185 98 43 chr11 104660379 104660704 -44122768 - MER2 DNA MER2_type 0 344 2 2503 51 3 0 chr11 104662194 104662490 -44120982 + AluY SINE Alu 3 299 -12 26 74 0 0 chr11 104662698 104662752 -44120720 + AT_rich Low_complexity Low_complexity 1 54 0 1018 245 18 71 chr11 104663621 104664001 -44119471 - MER92C LTR ERV1 -2 552 193 3672 195 27 10 chr11 104665668 104666474 -44116998 + L1MB7 LINE L1 5348 6167 -17 563 285 69 42 chr11 104667504 104667792 -44115680 - MER31-int LTR ERV1 -3903 1033 738 294 292 105 51 chr11 104669088 104669478 -44113994 - MER31-int LTR ERV1 -4079 568 158 264 258 31 70 chr11 104669874 104670002 -44113470 - MER31-int LTR ERV1 -4446 490 368 1652 83 0 14 chr11 104670867 104671085 -44112387 + AluSg/x SINE Alu 96 310 0 2334 113 3 0 chr11 104671150 104671460 -44112012 + AluSq SINE Alu 1 311 -2 216 308 77 0 chr11 104671470 104671535 -44111937 + MIR SINE MIR 45 114 -148 349 289 79 0 chr11 104671542 104671656 -44111816 + L2 LINE L2 3191 3313 0 396 267 104 66 chr11 104671771 104671916 -44111556 + L2 LINE L2 3008 3146 -167 1608 153 50 25 chr11 104671916 104672198 -44111274 - AluJb SINE Alu -23 289 1 396 267 104 66 chr11 104672198 104672340 -44111132 + L2 LINE L2 3146 3306 -7 237 348 17 9 chr11 104672523 104672638 -44110834 + L2 LINE L2 3193 3308 -5 250 125 0 31 chr11 104672642 104672706 -44110766 + (TA)n Simple_repeat Simple_repeat 1 62 0 21 36 0 0 chr11 104672751 104672779 -44110693 + AT_rich Low_complexity Low_complexity 1 28 0 1001 84 7 26 chr11 104672943 104673097 -44110375 - L1PA10 LINE L1 0 6168 6018 807 172 112 49 chr11 104673097 104673364 -44110108 + pTR5 LTR ERV1 745 1028 -1410 4250 119 120 32 chr11 104673442 104674201 -44109271 + LTR12 LTR ERV1 1 826 0 14448 109 11 12 chr11 104674201 104677407 -44106065 + HERV9 LTR ERV1 17 3116 -1936 493 286 91 28 chr11 104679050 104679487 -44103985 + MER57A LTR ERV1 1 402 -1 4656 69 106 0 chr11 104680668 104681290 -44102182 + LTR12 LTR ERV1 1 688 0 198 0 0 0 chr11 104681440 104681462 -44102010 + (A)n Simple_repeat Simple_repeat 1 22 0 23 54 0 0 chr11 104682918 104682955 -44100517 + AT_rich Low_complexity Low_complexity 1 37 0 1268 292 48 51 chr11 104683959 104684163 -44099309 - L2 LINE L2 -52 3261 3058 1965 106 44 24 chr11 104684163 104684456 -44099016 - AluSg SINE Alu -11 299 1 1268 292 48 51 chr11 104684456 104685003 -44098469 - L2 LINE L2 -255 3058 2511 773 194 6 48 chr11 104686568 104686733 -44096739 + FAM SINE Alu 1 158 -17 267 31 0 0 chr11 104686735 104686767 -44096705 + (CA)n Simple_repeat Simple_repeat 2 33 0 22 0 0 0 chr11 104686834 104686856 -44096616 + AT_rich Low_complexity Low_complexity 1 22 0 1572 237 134 37 chr11 104687099 104687664 -44095808 - MLT1E2 LTR MaLR 0 626 7 427 245 61 86 chr11 104687736 104687981 -44095491 + MLT1K LTR MaLR 332 570 -18 1862 144 7 17 chr11 104688318 104688616 -44094856 + AluSx SINE Alu 1 295 -17 331 214 23 122 chr11 104689234 104689365 -44094107 + MLT1I LTR MaLR 273 390 -19 194 298 0 18 chr11 104690362 104690419 -44093053 - L3b LINE CR1 -250 1333 1278 1745 158 31 47 chr11 104690505 104690822 -44092650 + AluJb SINE Alu 1 312 0 449 285 61 6 chr11 104690833 104690998 -44092474 + MLT1K LTR MaLR 415 588 0 551 272 99 24 chr11 104692360 104692573 -44090899 + MIR SINE MIR 30 258 -4 247 279 0 25 chr11 104693144 104693223 -44090249 + L2 LINE L2 3229 3305 -8 276 303 64 59 chr11 104693464 104693684 -44089788 + MLT1I LTR MaLR 58 312 -237 1491 112 27 19 chr11 104694897 104695155 -44088317 - L1PA10 LINE L1 0 6168 5909 24 85 0 0 chr11 104697531 104697590 -44085882 + AT_rich Low_complexity Low_complexity 1 59 0 293 321 30 42 chr11 104697590 104697755 -44085717 + MIR3 SINE MIR 23 185 -23 1310 260 34 33 chr11 104697948 104698488 -44084984 + MLT2F LTR ERVL 1 595 -68 259 242 0 0 chr11 104698498 104698564 -44084908 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 241 366 37 42 chr11 104698697 104698888 -44084584 + L3 LINE CR1 1240 1429 -148 300 53 0 0 chr11 104698941 104698979 -44084493 + (TG)n Simple_repeat Simple_repeat 2 39 0 403 380 22 5 chr11 104701564 104701748 -44081724 + L2 LINE L2 2489 2675 -639 256 308 89 6 chr11 104701753 104701922 -44081550 + MER58 DNA MER1_type 1 183 -2237 568 286 94 3 chr11 104703934 104704221 -44079251 + L1M4 LINE L1 4067 4379 -1767 189 0 0 0 chr11 104704788 104704809 -44078663 + (A)n Simple_repeat Simple_repeat 1 21 0 21 36 0 0 chr11 104705635 104705663 -44077809 + AT_rich Low_complexity Low_complexity 1 28 0 715 250 120 7 chr11 104706124 104706400 -44077072 - L1ME2 LINE L1 -48 6185 5879 1261 267 51 11 chr11 104706453 104707034 -44076438 - L1ME2 LINE L1 -545 5688 5071 673 263 148 35 chr11 104707075 104707709 -44075763 - L1ME2 LINE L1 -2544 3671 2966 661 142 0 18 chr11 104707715 104707828 -44075644 - L1PB1 LINE L1 -3 6148 6038 506 230 7 7 chr11 104707835 104707970 -44075502 - L1P LINE L1 -1022 5124 4990 4820 186 2 3 chr11 104707973 104708917 -44074555 + L1 LINE L1 3901 4843 -1303 1242 277 115 35 chr11 104708909 104711107 -44072365 - L1ME2 LINE L1 -3216 2999 672 * 4833 225 57 32 chr11 104711173 104712588 -44070884 - Charlie1a DNA MER1_type 0 1455 6 21 0 0 0 chr11 104712713 104712734 -44070738 + AT_rich Low_complexity Low_complexity 1 21 0 418 275 95 34 chr11 104712897 104713159 -44070313 - L1ME2 LINE L1 -6081 315 38 3110 145 17 62 chr11 104714132 104714773 -44068699 - LTR9 LTR ERV1 0 612 1 464 322 79 58 chr11 104715031 104715425 -44068047 - L2 LINE L2 0 3313 2912 7884 34 0 0 chr11 104715538 104717252 -44066220 - L1PA3 LINE L1 0 6155 4439 298 305 94 63 chr11 104717264 104717658 -44065814 - L2 LINE L2 -668 2646 2241 220 284 102 55 chr11 104718388 104718515 -44064957 + MIR SINE MIR 120 252 -10 197 435 43 0 chr11 104719889 104720027 -44063445 + L2 LINE L2 3125 3268 -4 419 329 172 15 chr11 104720213 104720556 -44062916 - L3 LINE CR1 -721 856 460 1754 259 95 52 chr11 104720636 104720775 -44062697 + L1M4 LINE L1 9 141 -6401 2160 122 0 28 chr11 104720775 104721096 -44062376 + AluSx SINE Alu 1 312 0 1754 259 95 52 chr11 104721096 104721606 -44061866 + L1M4 LINE L1 141 686 -5856 2535 78 26 0 chr11 104721648 104721995 -44061477 + L1PA7 LINE L1 5799 6154 0 2030 106 0 11 chr11 104722109 104722384 -44061088 + AluSx SINE Alu 3 274 -38 1081 216 21 12 chr11 104722387 104722628 -44060844 + L1M4 LINE L1 727 969 -5573 241 289 0 0 chr11 104722644 104722727 -44060745 + L1M4 LINE L1 3505 3587 -3057 * 559 165 43 0 chr11 104722722 104722837 -44060635 + L1M4 LINE L1 4161 4280 -2364 376 250 0 60 chr11 104722843 104722959 -44060513 + MLT1E2 LTR MaLR 1 109 -517 251 222 19 0 chr11 104723000 104723054 -44060418 + MLT1E2 LTR MaLR 112 166 -460 2278 83 0 3 chr11 104723378 104723678 -44059794 + AluSg SINE Alu 1 299 -11 2163 105 3 3 chr11 104724475 104724770 -44058702 + AluSc SINE Alu 1 295 -14 522 266 98 5 chr11 104725339 104725523 -44057949 + MIR SINE MIR 23 223 -39 281 303 83 18 chr11 104725538 104725647 -44057825 - MER91C DNA MER1_type -23 117 2 2569 55 0 0 chr11 104725681 104725990 -44057482 + AluY SINE Alu 1 309 -2 22 0 0 0 chr11 104726949 104726971 -44056501 + AT_rich Low_complexity Low_complexity 1 22 0 321 367 89 34 chr11 104726985 104727421 -44056051 - HAL1b LINE L1 -551 797 338 290 236 14 0 chr11 104727427 104727499 -44055973 + L1ME3 LINE L1 4465 4537 -1609 222 118 0 0 chr11 104727590 104727624 -44055848 + (CA)n Simple_repeat Simple_repeat 2 35 0 1166 291 83 21 chr11 104727686 104728738 -44054734 + L1ME3 LINE L1 4738 5873 -289 792 283 0 0 chr11 104729805 104729985 -44053487 + MER8 DNA MER2_type 1 180 -59 3022 185 80 14 chr11 104730015 104730706 -44052766 - L1MC3 LINE L1 -19 7766 7031 330 381 13 76 chr11 104730891 104731193 -44052279 + L2 LINE L2 2951 3233 -39 234 0 0 0 chr11 104731931 104731957 -44051515 + (T)n Simple_repeat Simple_repeat 1 26 0 2703 173 107 85 chr11 104732459 104733322 -44050150 - MER106B DNA MER1_type -177 882 1 320 379 24 52 chr11 104733439 104733650 -44049822 - L2 LINE L2 -2 3270 3066 1097 216 3 73 chr11 104733850 104734137 -44049335 - AluJo SINE Alu -23 289 23 201 381 110 0 chr11 104734471 104734589 -44048883 - L2 LINE L2 -583 2731 2601 1156 194 28 74 chr11 104734592 104734876 -44048596 - MER67D LTR ERV1 -243 271 1 1218 176 10 0 chr11 104734913 104735118 -44048354 + AluJo SINE Alu 5 211 -101 26 30 0 0 chr11 104735131 104735164 -44048308 + AT_rich Low_complexity Low_complexity 1 33 0 1840 269 74 66 chr11 104735293 104736159 -44047313 - ERVL LTR ERVL -1174 4590 3718 3456 332 54 24 chr11 104736162 104737921 -44045551 - ERVL LTR ERVL -2811 2843 1033 310 250 55 106 chr11 104738752 104738988 -44044484 - LTR41 LTR ERVL -1 772 549 430 248 47 16 chr11 104739331 104739460 -44044012 - LTR41 LTR ERVL -632 141 9 180 334 150 29 chr11 104739467 104739847 -44043625 - L2 LINE L2 -955 2359 1934 352 281 83 0 chr11 104740384 104740480 -44042992 - MIR SINE MIR -148 114 11 1912 215 77 77 chr11 104740798 104741305 -44042167 - L1MA9 LINE L1 -25 6287 5778 264 30 0 0 chr11 104741305 104741338 -44042134 + (TG)n Simple_repeat Simple_repeat 2 34 0 1912 215 77 77 chr11 104741338 104741543 -44041929 - L1MA9 LINE L1 -533 5779 5575 310 351 42 31 chr11 104741929 104742188 -44041284 + MIR SINE MIR 1 262 0 309 26 0 0 chr11 104742360 104742398 -44041074 + (CA)n Simple_repeat Simple_repeat 1 38 0 219 258 62 41 chr11 104742647 104742744 -44040728 + L2 LINE L2 3182 3280 -33 284 335 45 26 chr11 104743215 104743370 -44040102 + MIR SINE MIR 99 256 -6 25 31 0 0 chr11 104743947 104743979 -44039493 + AT_rich Low_complexity Low_complexity 1 32 0 2082 143 21 160 chr11 104744496 104745027 -44038445 - LTR32 LTR ERVL 0 471 15 395 316 87 9 chr11 104745193 104745411 -44038061 - MIR SINE MIR -24 238 4 23 33 0 0 chr11 104745877 104745907 -44037565 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr11 104747490 104747526 -44035946 + AT_rich Low_complexity Low_complexity 1 36 0 229 197 26 13 chr11 104747565 104747641 -44035831 + CT-rich Low_complexity Low_complexity 1 77 0 632 240 56 58 chr11 104747812 104748154 -44035318 - HAL1 LINE L1 -105 2402 2062 448 323 58 66 chr11 104748950 104749114 -44034358 - MIR SINE MIR -6 256 93 1820 160 49 32 chr11 104749114 104749483 -44033989 + THE1C LTR MaLR 1 375 0 448 323 58 66 chr11 104749483 104749575 -44033897 - MIR SINE MIR -169 93 2 23 33 0 0 chr11 104750362 104750392 -44033080 + AT_rich Low_complexity Low_complexity 1 30 0 1145 106 22 22 chr11 104750516 104750695 -44032777 - AluSc SINE Alu -4 305 127 1953 124 48 34 chr11 104752417 104752434 -44031038 - THE1B LTR MaLR 0 364 349 387 0 0 0 chr11 104752434 104752477 -44030995 + (TATG)n Simple_repeat Simple_repeat 1 43 0 1953 124 48 34 chr11 104752477 104752813 -44030659 - THE1B LTR MaLR -15 349 6 354 102 0 0 chr11 104754158 104754207 -44029265 - AluJo SINE Alu -14 288 240 1119 121 22 39 chr11 104754208 104754390 -44029082 - AluJo SINE Alu -117 195 17 1854 144 10 19 chr11 104754711 104755023 -44028449 + AluSq SINE Alu 3 311 -2 242 205 39 51 chr11 104755237 104755315 -44028157 - MIR SINE MIR -3 259 183 389 203 61 27 chr11 104755414 104755562 -44027910 - MER104 DNA Tc2 -25 155 3 331 277 0 12 chr11 104755566 104755649 -44027823 - MIR SINE MIR -178 84 3 334 199 0 128 chr11 104756488 104756629 -44026843 - L1MA9 LINE L1 0 6312 6190 29 70 0 0 chr11 104756631 104756688 -44026784 + AT_rich Low_complexity Low_complexity 1 57 0 15276 136 32 30 chr11 104756710 104759361 -44024111 + Tigger2 DNA MER2_type 1 2660 -58 1796 156 0 14 chr11 104759361 104759656 -44023816 + AluSx SINE Alu 12 302 -10 15276 136 32 30 chr11 104759656 104759715 -44023757 + Tigger2 DNA MER2_type 2660 2717 -1 372 308 115 28 chr11 104759918 104760171 -44023301 + L1ME LINE L1 4573 4847 -1299 23129 81 2 2 chr11 104760213 104763388 -44020084 - L1P3 LINE L1 -1120 5341 2165 273 57 0 0 chr11 104763388 104763423 -44020049 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 7341 37 8 2 chr11 104763423 104764784 -44018688 - L1PA4 LINE L1 -12 6143 4780 475 50 0 0 chr11 104764784 104764844 -44018628 - L1P LINE L1 -1045 5101 5042 7622 116 18 0 chr11 104764845 104765971 -44017501 - L1P3 LINE L1 -4792 1669 524 6621 79 1 9 chr11 104765972 104767120 -44016352 + L1PA6 LINE L1 5014 6154 0 334 304 72 27 chr11 104767554 104767810 -44015662 + L1ME LINE L1 5373 5645 -519 290 370 76 0 chr11 104767984 104768103 -44015369 + L3 LINE CR1 1375 1502 -75 21 0 0 0 chr11 104768566 104768587 -44014885 + AT_rich Low_complexity Low_complexity 1 21 0 253 179 41 41 chr11 104769114 104769259 -44014213 + (TA)n Simple_repeat Simple_repeat 1 145 0 * 277 164 35 70 chr11 104769151 104769322 -44014150 + (TTATA)n Simple_repeat Simple_repeat 3 167 0 307 182 42 67 chr11 104769393 104769558 -44013914 + (TATAA)n Simple_repeat Simple_repeat 4 164 0 343 347 0 21 chr11 104769648 104769743 -44013729 - L2 LINE L2 -43 3229 3137 12725 226 30 22 chr11 104770285 104771094 -44012378 - L1PA16 LINE L1 -2 7602 6801 1988 150 7 0 chr11 104771094 104771401 -44012071 - AluSx SINE Alu -3 309 1 12725 226 30 22 chr11 104771401 104775901 -44007571 - L1PA16 LINE L1 -803 6801 2258 370 316 0 15 chr11 104776677 104776810 -44006662 - L1PA16 LINE L1 -5276 2298 2168 922 294 23 48 chr11 104776813 104777122 -44006350 - L1PA16 LINE L1 -6486 1088 788 301 226 72 82 chr11 104777302 104777510 -44005962 - L1ME3A LINE L1 -303 5867 5662 1066 233 71 65 chr11 104777730 104777953 -44005519 - MLT1H LTR MaLR -195 354 125 2287 86 4 0 chr11 104777953 104778287 -44005185 + AluSc SINE Alu 1 335 0 1066 233 71 65 chr11 104778287 104778413 -44005059 - MLT1H LTR MaLR -424 125 1 331 254 41 25 chr11 104779745 104779867 -44003605 - MIR SINE MIR -84 178 55 1994 127 0 7 chr11 104780015 104780298 -44003174 + AluSx SINE Alu 1 281 -31 2454 37 0 17 chr11 104780398 104780692 -44002780 - AluY SINE Alu -22 289 1 24 0 0 0 chr11 104782777 104782801 -44000671 + AT_rich Low_complexity Low_complexity 1 24 0 4316 153 30 13 chr11 104783086 104783858 -43999614 + LTR1 LTR ERV1 1 785 0 360 361 16 0 chr11 104783860 104783982 -43999490 + L2 LINE L2 3190 3313 0 1432 114 46 5 chr11 104784366 104784585 -43998887 - MER30 DNA MER1_type -1 229 2 763 249 168 0 chr11 104787134 104787468 -43996004 - Charlie7 DNA MER1_type -1930 682 293 6267 75 7 13 chr11 104787468 104788320 -43995152 - L1PA11 LINE L1 -13 6161 5315 1237 121 6 0 chr11 104788320 104788486 -43994986 - AluY SINE Alu -144 167 1 6368 219 45 96 chr11 104788487 104792631 -43990841 - L1PA12 LINE L1 -1979 5605 888 1460 276 120 13 chr11 104792713 104793404 -43990068 + L1ME3A LINE L1 5376 6140 -30 7911 133 18 17 chr11 104794182 104795480 -43987992 - HSMAR2 DNA Mariner -1 1301 3 693 330 152 65 chr11 104795526 104796641 -43986831 + L2 LINE L2 1721 2932 -382 184 368 44 0 chr11 104796879 104796947 -43986525 + L2 LINE L2 3134 3204 -68 209 365 28 19 chr11 104797107 104797214 -43986258 + MIR3 SINE MIR 53 160 -48 1071 215 142 19 chr11 104797413 104797738 -43985734 + MLT1A1 LTR MaLR 1 365 0 21 36 0 0 chr11 104797878 104797906 -43985566 + AT_rich Low_complexity Low_complexity 1 28 0 34 24 0 0 chr11 104798428 104798469 -43985003 + AT_rich Low_complexity Low_complexity 1 41 0 311 286 61 66 chr11 104798497 104798693 -43984779 + MIR SINE MIR 58 252 -10 3211 299 109 21 chr11 104800797 104801808 -43981664 + L2 LINE L2 986 2157 -1157 773 240 48 14 chr11 104801808 104802016 -43981456 - MER58C DNA MER1_type 0 215 1 3211 299 109 21 chr11 104802016 104802411 -43981061 + L2 LINE L2 2157 2516 -798 201 39 0 0 chr11 104802644 104802670 -43980802 + (TTG)n Simple_repeat Simple_repeat 2 27 0 21 36 0 0 chr11 104802791 104802819 -43980653 + AT_rich Low_complexity Low_complexity 1 28 0 10132 190 62 21 chr11 104802835 104802858 -43980614 - L1 LINE L1 -840 5306 5285 4194 156 39 16 chr11 104802858 104803705 -43979767 - L1MA7 LINE L1 -4 6287 5422 10132 190 62 21 chr11 104803705 104804136 -43979336 - L1 LINE L1 -861 5285 4873 2492 124 51 7 chr11 104804136 104804546 -43978926 + MSTA LTR MaLR 1 428 0 10132 190 62 21 chr11 104804546 104805540 -43977932 - L1 LINE L1 -1273 4873 3921 2152 114 3 0 chr11 104805540 104805839 -43977633 - AluY SINE Alu -11 300 1 10132 190 62 21 chr11 104805839 104806915 -43976557 - L1 LINE L1 -2225 3921 2676 696 323 67 15 chr11 104806927 104807401 -43976071 + L2 LINE L2 2670 3166 -147 22 0 0 0 chr11 104807804 104807826 -43975646 + AT_rich Low_complexity Low_complexity 1 22 0 1112 155 33 33 chr11 104808221 104808434 -43975038 + MER2 DNA MER2_type 2 214 -131 42130 38 22 1 chr11 104808434 104814428 -43969044 - L1PA2 LINE L1 -34 6121 1 910 153 19 13 chr11 104814432 104814589 -43968883 + MER2 DNA MER2_type 187 344 -1 495 275 18 24 chr11 104814592 104814759 -43968713 + L1MCb LINE L1 411 576 -5469 2889 9 0 3 chr11 104815103 104815422 -43968050 - AluYb8 SINE Alu 0 318 1 608 352 13 13 chr11 104818016 104818252 -43965220 - MIR SINE MIR -11 251 16 22 56 0 0 chr11 104818654 104818690 -43964782 + AT_rich Low_complexity Low_complexity 1 36 0 4535 137 8 24 chr11 104819160 104819506 -43963966 - L1MA5 LINE L1 0 6300 5950 2181 115 3 0 chr11 104819506 104819801 -43963671 - AluSx SINE Alu -16 296 1 4535 137 8 24 chr11 104819801 104820249 -43963223 - L1MA5 LINE L1 -350 5950 5519 636 149 9 28 chr11 104820250 104820357 -43963115 + MER6A DNA MER2_type 14 118 -487 422 186 12 12 chr11 104820360 104820446 -43963026 + MER6A DNA MER2_type 519 604 -1 852 111 0 0 chr11 104820447 104820573 -43962899 - L1MA5 LINE L1 -771 5532 5407 212 267 22 0 chr11 104822382 104822427 -43961045 + MIR SINE MIR 53 98 -164 317 281 12 0 chr11 104822456 104822538 -43960934 + MIR SINE MIR 172 254 -8 217 255 78 0 chr11 104822584 104822635 -43960837 + MER91C DNA MER1_type 36 90 -50 969 337 71 37 chr11 104823721 104824256 -43959216 + L2 LINE L2 48 563 -2751 3350 162 110 24 chr11 104824256 104824921 -43958551 + MER72 LTR ERV1 1 722 0 969 337 71 37 chr11 104824921 104825296 -43958176 + L2 LINE L2 563 1237 -2077 3594 163 18 21 chr11 104825312 104825969 -43957503 + Tigger3b DNA MER2_type 1 655 -576 4773 139 45 2 chr11 104825973 104826793 -43956679 - L1MA3 LINE L1 -1 6304 5450 2472 126 11 3 chr11 104826793 104827167 -43956305 + MSTA-int LTR MaLR 1274 1650 -1 2526 152 24 9 chr11 104827214 104827636 -43955836 + MSTA LTR MaLR 1 428 0 5289 190 24 17 chr11 104827636 104829143 -43954329 - L1M1 LINE L1 -5513 2052 15 3132 138 20 53 chr11 104829143 104829750 -43953722 + Tigger3b DNA MER2_type 646 1232 0 2876 276 125 42 chr11 104829755 104831651 -43951821 + L2 LINE L2 1250 3313 0 1965 104 9 52 chr11 104832874 104833200 -43950272 + AluSx SINE Alu 1 312 0 261 0 0 0 chr11 104833226 104833255 -43950217 + (A)n Simple_repeat Simple_repeat 1 29 0 231 254 36 91 chr11 104833426 104833536 -43949936 + AluSp/q SINE Alu 200 303 0 322 344 70 38 chr11 104833744 104833901 -43949571 + L2 LINE L2 3106 3267 -5 222 396 54 0 chr11 104833912 104834023 -43949449 - L2 LINE L2 -5 3267 3151 337 202 142 44 chr11 104834185 104834368 -43949104 - L1ME4a LINE L1 -22 6099 5899 2626 48 0 0 chr11 104835987 104836298 -43947174 + AluY SINE Alu 1 311 0 207 69 0 0 chr11 104836462 104836491 -43946981 + (A)n Simple_repeat Simple_repeat 1 29 0 26 0 0 0 chr11 104836634 104836660 -43946812 + AT_rich Low_complexity Low_complexity 1 26 0 658 22 22 22 chr11 104836858 104836950 -43946522 + (TCTA)n Simple_repeat Simple_repeat 2 93 0 482 282 15 0 chr11 104837363 104837494 -43945978 + MER94 DNA DNA 1 133 -1 339 366 50 12 chr11 104838258 104838419 -43945053 - MIR SINE MIR -71 191 25 205 200 0 0 chr11 104838911 104838951 -43944521 + (TTTAA)n Simple_repeat Simple_repeat 3 42 0 385 229 19 9 chr11 104839482 104839587 -43943885 + MER103 DNA DNA 39 144 -22 2167 126 0 0 chr11 104839944 104840246 -43943226 - AluSx SINE Alu -9 303 2 32 0 0 0 chr11 104840312 104840344 -43943128 + AT_rich Low_complexity Low_complexity 1 32 0 417 39 0 0 chr11 104840914 104840923 -43942549 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 417 39 0 0 chr11 104840923 104840974 -43942498 + (TTCC)n Simple_repeat Simple_repeat 3 53 0 450 228 114 45 chr11 104841589 104841991 -43941481 - MLT1H1 LTR MaLR 0 555 118 255 270 64 108 chr11 104843156 104843360 -43940112 - L3b LINE CR1 -188 1395 1201 224 30 30 0 chr11 104843699 104843732 -43939740 + (TTTTTA)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr11 104845319 104845343 -43938129 + AT_rich Low_complexity Low_complexity 1 24 0 340 245 64 0 chr11 104845611 104845705 -43937767 + MLT2C1 LTR ERVL 79 178 -219 1044 255 22 56 chr11 104845969 104846326 -43937146 + MLT2C1 LTR ERVL 1 345 -52 3867 266 93 46 chr11 104846382 104847827 -43935645 + ERVL LTR ERVL 2 1514 -4250 273 250 20 100 chr11 104847818 104847918 -43935554 + ERVL LTR ERVL 1940 2031 -3623 * 1920 171 14 76 chr11 104847931 104848363 -43935109 - MLT2D LTR ERVL -7 407 3 5117 242 34 8 chr11 104848363 104850056 -43933416 + ERVL LTR ERVL 2074 3854 -1671 2606 45 0 3 chr11 104850056 104850368 -43933104 + AluY SINE Alu 1 311 0 1436 66 5 15 chr11 104850515 104850711 -43932761 + L1P4 LINE L1 5485 5678 -490 198 235 0 59 chr11 104850908 104850959 -43932513 + L3b LINE CR1 1513 1560 -23 29 28 0 0 chr11 104851767 104851803 -43931669 + AT_rich Low_complexity Low_complexity 1 36 0 244 118 0 0 chr11 104852123 104852157 -43931315 + Tigger2 DNA MER2_type 1 34 -2684 342 333 24 0 chr11 104852662 104852788 -43930684 + MIR SINE MIR 117 245 -17 194 105 26 0 chr11 104852808 104852846 -43930626 + (TTA)n Simple_repeat Simple_repeat 2 40 0 25 0 0 0 chr11 104854645 104854670 -43928802 + AT_rich Low_complexity Low_complexity 1 25 0 26 50 0 0 chr11 104854885 104854925 -43928547 + AT_rich Low_complexity Low_complexity 1 40 0 276 276 0 2 chr11 104854966 104855058 -43928414 + L1ME LINE L1 5637 5727 -435 347 173 0 40 chr11 104855078 104855153 -43928319 + L1PA10 LINE L1 6096 6167 -1 22 0 0 0 chr11 104855565 104855587 -43927885 + AT_rich Low_complexity Low_complexity 1 22 0 476 346 103 26 chr11 104855724 104856036 -43927436 + L2 LINE L2 2978 3313 0 23 0 0 0 chr11 104856136 104856159 -43927313 + AT_rich Low_complexity Low_complexity 1 23 0 4898 26 2 2 chr11 104856344 104856930 -43926542 + L1PA4 LINE L1 5564 6149 -6 312 329 120 81 chr11 104857182 104857516 -43925956 - L2 LINE L2 -1 3271 2925 235 304 0 43 chr11 104858345 104858414 -43925058 + MIR SINE MIR 3 68 -194 * 242 246 66 0 chr11 104858403 104858464 -43925008 - MIR SINE MIR -115 147 83 5914 184 69 44 chr11 104858483 104859313 -43924159 - L1MC3 LINE L1 -546 7239 6356 2154 125 7 0 chr11 104859313 104859617 -43923855 + AluSq SINE Alu 1 306 -7 5914 184 69 44 chr11 104859617 104860244 -43923228 - L1MC3 LINE L1 -1429 6356 5746 1841 312 32 20 chr11 104860227 104861105 -43922367 - L1MEc LINE L1 -2068 4147 3260 * 1550 269 136 11 chr11 104861112 104861849 -43921623 - L1MEc LINE L1 -3036 3179 2351 1332 219 67 9 chr11 104861852 104862181 -43921291 - L1MC2 LINE L1 0 6344 5997 2826 269 40 45 chr11 104862184 104863655 -43919817 - L1MEc LINE L1 -4003 2393 930 4628 167 45 34 chr11 104863657 104864617 -43918855 + L1MA4 LINE L1 5323 6292 -8 1171 262 43 36 chr11 104864615 104864919 -43918553 - L1MEc LINE L1 -5457 939 639 * 2039 117 20 38 chr11 104864919 104865262 -43918210 + MER1B DNA MER1_type 1 337 0 1171 262 43 36 chr11 104865262 104865801 -43917671 - L1MEc LINE L1 -5757 639 45 1971 226 108 24 chr11 104865808 104866475 -43916997 + Charlie1 DNA MER1_type 2038 2760 -1 185 283 62 35 chr11 104866997 104867110 -43916362 - L2 LINE L2 -86 3227 3112 240 111 0 0 chr11 104867820 104867856 -43915616 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 204 279 29 0 chr11 104867965 104868033 -43915439 - MIR SINE MIR -18 244 175 428 358 27 0 chr11 104868778 104868926 -43914546 - MIR3 SINE MIR -2 206 55 1943 70 0 12 chr11 104869109 104869366 -43914106 - L1PA10 LINE L1 -490 5678 5425 3228 97 8 14 chr11 104869366 104869846 -43913626 + L1PA10 LINE L1 5680 6159 -9 754 309 60 11 chr11 104870635 104870920 -43912552 + L2 LINE L2 2186 2484 -830 11924 20 0 1 chr11 104871156 104873321 -43910151 - L1PA2 LINE L1 0 6155 3992 575 320 87 50 chr11 104873336 104873981 -43909491 + L2 LINE L2 2582 3241 -72 548 227 93 0 chr11 104873981 104874153 -43909319 - MER53 DNA DNA -1 188 1 575 320 87 50 chr11 104874153 104874228 -43909244 + L2 LINE L2 3241 3312 -1 24 53 0 0 chr11 104874995 104875033 -43908439 + AT_rich Low_complexity Low_complexity 1 38 0 189 0 0 0 chr11 104876061 104876082 -43907390 + (A)n Simple_repeat Simple_repeat 1 21 0 201 74 0 0 chr11 104876246 104876273 -43907199 + (A)n Simple_repeat Simple_repeat 1 27 0 1244 39 0 6 chr11 104877218 104877374 -43906098 + L1PA4 LINE L1 6000 6154 -1 201 74 0 0 chr11 104877385 104877412 -43906060 + (A)n Simple_repeat Simple_repeat 1 27 0 591 278 46 21 chr11 104877470 104877862 -43905610 + L1ME3A LINE L1 5287 5907 -263 2097 111 0 3 chr11 104878004 104878322 -43905150 + AluSx SINE Alu 3 319 0 29 70 0 0 chr11 104879177 104879234 -43904238 + AT_rich Low_complexity Low_complexity 1 57 0 7473 26 7 1 chr11 104879572 104880587 -43902885 + L1PA4 LINE L1 5136 6155 0 438 264 93 62 chr11 104880664 104880857 -43902615 + MIR SINE MIR 64 262 0 357 339 17 0 chr11 104881196 104881314 -43902158 - MIR SINE MIR -77 185 66 456 237 52 138 chr11 104882681 104883065 -43900407 - Charlie7 DNA MER1_type -1868 744 394 657 207 80 32 chr11 104883065 104883253 -43900219 - L1M4 LINE L1 -1255 4891 4695 3212 169 89 3 chr11 104883300 104884027 -43899445 - L1MA8 LINE L1 -281 6010 5206 * 5771 173 38 7 chr11 104884024 104884492 -43898980 + L1 LINE L1 4001 4453 -1693 318 50 0 0 chr11 104884492 104884532 -43898940 + (TATATG)n Simple_repeat Simple_repeat 5 44 0 5771 173 38 7 chr11 104884532 104885234 -43898238 + L1 LINE L1 4453 5208 -938 216 91 23 45 chr11 104885613 104885657 -43897815 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 29 98 0 0 chr11 104886069 104886161 -43897311 + AT_rich Low_complexity Low_complexity 1 92 0 2172 105 26 3 chr11 104886381 104886686 -43896786 - AluSx SINE Alu 0 312 1 28 61 0 0 chr11 104886883 104886932 -43896540 + AT_rich Low_complexity Low_complexity 1 49 0 291 344 58 43 chr11 104887134 104887410 -43896062 + MLT1I LTR MaLR 1 280 -129 1034 248 97 29 chr11 104887412 104887795 -43895677 - MLT1C LTR MaLR 0 467 59 428 226 11 0 chr11 104887834 104887927 -43895545 + MLT1I LTR MaLR 308 401 -8 459 0 0 0 chr11 104888217 104888268 -43895204 + (TG)n Simple_repeat Simple_repeat 2 52 0 556 341 34 10 chr11 104888305 104888510 -43894962 - MIR SINE MIR -6 256 47 1010 336 32 14 chr11 104889990 104890424 -43893048 - L2 LINE L2 -7 3306 2865 2279 111 28 30 chr11 104891173 104891534 -43891938 - THE1B LTR MaLR -4 360 1 10724 110 17 1 chr11 104891536 104893089 -43890383 - THE1B-int LTR MaLR -2 1578 1 2149 128 25 35 chr11 104893089 104893457 -43890015 - THE1B LTR MaLR 0 364 1 681 126 0 0 chr11 104893929 104894040 -43889432 + (GA)n Simple_repeat Simple_repeat 2 112 0 24323 43 6 1 chr11 104894302 104898138 -43885334 - L1PA5 LINE L1 -8 6146 2290 3519 59 0 21 chr11 104898138 104898616 -43884856 + L1PA5 LINE L1 1810 2277 -3869 1547 222 24 9 chr11 104900065 104900398 -43883074 + MLT1F LTR MaLR 157 494 -48 189 360 58 14 chr11 104903396 104903535 -43879937 + L2 LINE L2 3148 3292 -21 6209 26 0 0 chr11 104903800 104904529 -43878943 + L1PA3 LINE L1 5424 6152 -3 23 33 0 0 chr11 104906219 104906249 -43877223 + AT_rich Low_complexity Low_complexity 1 30 0 37 52 0 0 chr11 104906295 104906353 -43877119 + AT_rich Low_complexity Low_complexity 1 58 0 962 298 130 31 chr11 104906391 104907006 -43876466 + L2 LINE L2 1792 2524 -790 649 255 38 26 chr11 104907315 104907582 -43875890 + L1MC3 LINE L1 4270 4539 -1607 10325 188 65 33 chr11 104907586 104910286 -43873186 + L1MC3 LINE L1 4909 7702 -83 2657 180 12 88 chr11 104910286 104910948 -43872524 - LTR9 LTR ERV1 0 612 1 10325 188 65 33 chr11 104910948 104911029 -43872443 + L1MC3 LINE L1 7702 7779 -6 1558 99 5 0 chr11 104911130 104911332 -43872140 + AluSp SINE Alu 86 288 -25 212 0 36 0 chr11 104911335 104911363 -43872109 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 310 325 85 69 chr11 104911574 104911762 -43871710 + MER91A DNA MER1_type 4 194 -2 508 304 141 25 chr11 104912196 104912749 -43870723 - L1ME3 LINE L1 -258 5904 5288 386 313 35 17 chr11 104912814 104913102 -43870370 - L1ME3 LINE L1 -875 5271 4979 314 258 116 73 chr11 104913120 104913353 -43870119 - L1ME3 LINE L1 -1265 4881 4639 1468 274 97 16 chr11 104914405 104915354 -43868118 - L1ME3 LINE L1 -2894 3252 2227 2255 88 7 0 chr11 104915365 104915662 -43867810 - AluSp SINE Alu -14 299 1 1045 239 20 47 chr11 104915975 104916230 -43867242 + MIR SINE MIR 5 252 -10 1192 206 47 30 chr11 104916537 104916838 -43866634 + MER33 DNA MER1_type 19 324 0 307 279 68 43 chr11 104916903 104917064 -43866408 + L2 LINE L2 3140 3304 -9 201 333 0 13 chr11 104917447 104917522 -43865950 - L3b LINE CR1 -360 1223 1150 1624 191 0 13 chr11 104917831 104918134 -43865338 + Tigger1 DNA MER2_type 3 301 -2117 1533 133 27 8 chr11 104918129 104918385 -43865087 + Tigger1 DNA MER2_type 664 924 -1494 * 6419 139 18 1 chr11 104918392 104919417 -43864055 + Tigger1 DNA MER2_type 1377 2418 0 24 0 0 0 chr11 104919417 104919441 -43864031 + AT_rich Low_complexity Low_complexity 1 24 0 1439 237 53 20 chr11 104920071 104920429 -43863043 + MLT1A2 LTR MaLR 1 370 -4 235 167 0 0 chr11 104921407 104921443 -43862029 - U2 snRNA snRNA -152 36 1 586 267 55 0 chr11 104921443 104921608 -43861864 - MIR SINE MIR -32 230 57 599 248 6 25 chr11 104921694 104921855 -43861617 + MIR SINE MIR 103 260 -2 1326 242 76 50 chr11 104923873 104924398 -43859074 - L1ME3 LINE L1 -1 6161 5623 4103 135 16 0 chr11 104924416 104925089 -43858383 - L1MA5 LINE L1 -2 6298 5615 5819 143 20 14 chr11 104925099 104926355 -43857117 + L1PA16 LINE L1 4903 6165 -1 21 57 0 0 chr11 104926391 104926426 -43857046 + AT_rich Low_complexity Low_complexity 1 35 0 247 119 17 34 chr11 104927409 104927468 -43856004 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 400 286 163 17 chr11 104928995 104929173 -43854299 - MIR SINE MIR -13 249 46 248 240 0 31 chr11 104929343 104929378 -43854094 + (TA)n Simple_repeat Simple_repeat 1 36 -57 8246 184 66 27 chr11 104929378 104931067 -43852405 + MER52A LTR ERV1 1 1755 0 248 240 0 31 chr11 104931067 104931127 -43852345 + (TA)n Simple_repeat Simple_repeat 36 93 0 21 0 0 0 chr11 104931731 104931752 -43851720 + AT_rich Low_complexity Low_complexity 1 21 0 198 370 8 34 chr11 104932030 104932149 -43851323 + MIR SINE MIR 97 212 -50 21 0 0 0 chr11 104933027 104933048 -43850424 + AT_rich Low_complexity Low_complexity 1 21 0 331 340 69 31 chr11 104935077 104935236 -43848236 - MER5A DNA MER1_type -7 182 18 255 174 193 64 chr11 104935272 104935381 -43848091 - L1ME4a LINE L1 0 6121 5999 301 230 23 23 chr11 104935466 104935553 -43847919 - L1MC4 LINE L1 -1342 6700 6614 348 308 46 31 chr11 104935632 104935827 -43847645 - HAL1 LINE L1 -906 1601 1404 278 321 68 14 chr11 104935874 104936095 -43847377 - L1MC4 LINE L1 -1882 5926 5694 484 349 150 19 chr11 104936398 104936759 -43846713 - LTR16A LTR ERVL -27 423 16 180 77 0 0 chr11 104937047 104937073 -43846399 + (TAA)n Simple_repeat Simple_repeat 1 26 0 278 174 0 0 chr11 104937273 104937319 -43846153 - HERV16 LTR ERVL -613 4383 4338 781 376 61 17 chr11 104937491 104938130 -43845342 - HERV16 LTR ERVL -1213 4441 3775 1306 205 156 13 chr11 104938130 104938437 -43845035 + MER76 LTR ERV 7 357 -331 265 327 27 7 chr11 104940000 104940150 -43843322 + MER70-int LTR ERVL 2511 2663 -2991 251 340 28 21 chr11 104940561 104940702 -43842770 + MER70-int LTR ERVL 2584 2725 -2805 479 282 29 23 chr11 104941125 104941299 -43842173 + MER70-int LTR ERVL 2487 2661 -2362 389 301 65 16 chr11 104942686 104942809 -43840663 + L1M4b LINE L1 294 422 -6437 2899 235 59 34 chr11 104942812 104943345 -43840127 + L1M4b LINE L1 808 1326 -5529 1588 136 14 0 chr11 104943345 104943624 -43839848 + L1MA3 LINE L1 6022 6304 -1 2899 235 59 34 chr11 104943624 104944213 -43839259 + L1M4b LINE L1 1326 1962 -4893 2478 196 76 0 chr11 104944314 104944777 -43838695 + L1PA13 LINE L1 1 498 -6289 * 2765 187 46 10 chr11 104944775 104946298 -43837174 + L1PA13 LINE L1 1223 2689 -4125 2143 128 51 23 chr11 104946298 104946650 -43836822 - THE1B LTR MaLR -2 362 1 2765 187 46 10 chr11 104946650 104950308 -43833164 + L1PA13 LINE L1 2689 6813 -1 647 299 55 30 chr11 104950308 104950804 -43832668 + L1M4b LINE L1 2010 2668 -4470 303 296 0 11 chr11 104950850 104950938 -43832534 + L1M4b LINE L1 2476 2562 -4576 23 33 0 0 chr11 104951235 104951265 -43832207 + AT_rich Low_complexity Low_complexity 1 30 0 257 296 34 23 chr11 104951951 104952090 -43831382 - MIR SINE MIR -61 147 16 186 43 0 0 chr11 104953130 104953153 -43830319 + (TA)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr11 104955297 104955319 -43828153 + AT_rich Low_complexity Low_complexity 1 22 0 1824 140 63 36 chr11 104955380 104955745 -43827727 - THE1C LTR MaLR 0 375 1 9145 138 20 43 chr11 104955750 104957359 -43826113 - THE1C-int LTR MaLR -6 1574 4 1842 156 34 42 chr11 104957361 104957739 -43825733 - THE1C LTR MaLR 0 375 1 234 222 0 19 chr11 104957788 104957842 -43825630 + MER5B DNA MER1_type 2 54 -124 727 304 36 71 chr11 104958101 104958539 -43824933 + LTR33A LTR ERVL 66 488 -35 313 339 59 8 chr11 104959448 104959566 -43823906 + L2 LINE L2 3177 3300 -13 612 260 0 8 chr11 104960071 104960198 -43823274 + MLT2E LTR ERVL 1 126 -502 1661 204 22 6 chr11 104960221 104960545 -43822927 - MLT1A1 LTR MaLR -18 347 19 758 278 92 15 chr11 104960564 104960988 -43822484 + MLT2E LTR ERVL 137 628 0 25 75 0 0 chr11 104961267 104961320 -43822152 + AT_rich Low_complexity Low_complexity 1 53 0 232 286 133 10 chr11 104961548 104961646 -43821826 + L2 LINE L2 3163 3272 0 961 283 54 59 chr11 104961698 104962256 -43821216 - MLT1F1 LTR MaLR -12 555 1 671 83 0 117 chr11 104962322 104962442 -43821030 + AluSc SINE Alu 112 217 -92 464 246 156 47 chr11 104963159 104963370 -43820102 - L2 LINE L2 -1 3312 3079 23 0 0 0 chr11 104963681 104963704 -43819768 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr11 104964212 104964232 -43819240 + (GA)n Simple_repeat Simple_repeat 2 21 0 328 103 15 15 chr11 104964234 104964302 -43819170 + (TG)n Simple_repeat Simple_repeat 1 68 0 208 320 115 8 chr11 104965460 104965582 -43817890 + MIR3 SINE MIR 66 200 -8 22 70 0 0 chr11 104965716 104965759 -43817713 + AT_rich Low_complexity Low_complexity 1 43 0 380 247 0 0 chr11 104966798 104966887 -43816585 + L1MA6 LINE L1 6182 6270 -30 2871 141 26 92 chr11 104968329 104968948 -43814524 + LTR1 LTR ERV1 20 597 -188 268 289 63 47 chr11 104970343 104970470 -43813002 - MER5A DNA MER1_type -10 179 40 22 0 0 0 chr11 104970553 104970575 -43812897 + AT_rich Low_complexity Low_complexity 1 22 0 408 343 42 18 chr11 104971190 104971356 -43812116 - MIR SINE MIR -61 201 32 216 0 0 0 chr11 104971448 104971472 -43812000 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 804 181 78 30 chr11 104971482 104971648 -43811824 - AluJo SINE Alu -125 187 14 254 270 16 0 chr11 104972104 104972167 -43811305 + MIR SINE MIR 194 257 -5 340 290 107 23 chr11 104972231 104972362 -43811110 - MIR SINE MIR -108 154 13 276 292 51 107 chr11 104972496 104972674 -43810798 - MIR3 SINE MIR -1 207 40 2092 127 7 7 chr11 104973827 104974149 -43809323 - AluSq SINE Alu 0 313 1 33 0 0 0 chr11 104974385 104974418 -43809054 + AT_rich Low_complexity Low_complexity 1 33 0 2168 133 30 25 chr11 104974873 104975235 -43808237 - THE1B LTR MaLR 0 364 1 30 103 0 0 chr11 104975785 104975892 -43807580 + AT_rich Low_complexity Low_complexity 1 107 0 246 346 25 0 chr11 104977837 104977918 -43805554 + L3 LINE CR1 1422 1504 -73 2564 143 17 21 chr11 104978030 104978451 -43805021 - MSTB1 LTR MaLR -13 419 1 1679 289 26 4 chr11 104978578 104979084 -43804388 + LTR40a LTR ERVL 1 517 -2 859 192 117 14 chr11 104979631 104979845 -43803627 + MER46A DNA MER2_type 1 236 0 180 0 0 0 chr11 104980245 104980265 -43803207 + (CAA)n Simple_repeat Simple_repeat 2 21 0 275 296 96 0 chr11 104980815 104980935 -43802537 - MIR SINE MIR -61 147 32 1785 172 20 59 chr11 104981486 104981892 -43801580 + MLT1B LTR MaLR 1 390 0 1344 268 31 26 chr11 104982084 104982472 -43801000 + LTR16C LTR ERVL 100 489 -2 232 235 161 13 chr11 104982865 104983014 -43800458 - L1M4 LINE L1 -989 5157 4987 1309 161 86 86 chr11 104984233 104984525 -43798947 - AluJb SINE Alu -20 292 1 279 340 47 20 chr11 104984536 104984686 -43798786 + L2 LINE L2 2933 3086 -186 199 262 0 16 chr11 104984710 104984771 -43798701 + L2 LINE L2 3204 3263 -9 21 0 0 0 chr11 104984975 104984996 -43798476 + AT_rich Low_complexity Low_complexity 1 21 0 817 313 108 38 chr11 104985106 104985716 -43797756 + L2 LINE L2 2638 3280 -33 201 200 22 0 chr11 104985938 104985983 -43797489 + T-rich Low_complexity Low_complexity 3 48 0 1930 153 11 60 chr11 104986651 104987017 -43796455 + MER7A DNA MER2_type 1 346 0 23 33 0 0 chr11 104987142 104987172 -43796300 + AT_rich Low_complexity Low_complexity 1 30 0 186 302 32 16 chr11 104987192 104987255 -43796217 - MIR SINE MIR -132 130 67 608 221 82 0 chr11 104988198 104988356 -43795116 + L1ME3A LINE L1 5724 5894 -276 321 338 90 0 chr11 104988383 104988528 -43794944 + L1ME3A LINE L1 5962 6119 -51 251 381 29 0 chr11 104991427 104991532 -43791940 + MIR SINE MIR 123 230 -32 757 302 113 58 chr11 104993153 104993208 -43790264 + L1MC3 LINE L1 1 52 -5993 8859 94 12 3 chr11 104993208 104995248 -43788224 - L1PA7 LINE L1 -1 6153 4109 757 302 113 58 chr11 104995248 104995742 -43787730 + L1MC3 LINE L1 52 482 -5563 375 251 12 54 chr11 104995891 104996058 -43787414 + L1MC3 LINE L1 570 729 -5316 207 0 0 0 chr11 104996073 104996096 -43787376 + (A)n Simple_repeat Simple_repeat 1 23 0 383 211 18 102 chr11 104996124 104996183 -43787289 + L1MC3 LINE L1 762 824 -5221 2345 92 0 3 chr11 104996183 104996487 -43786985 + AluSp SINE Alu 1 303 -10 383 211 18 102 chr11 104996487 104996593 -43786879 + L1MC3 LINE L1 824 913 -5132 1717 197 50 75 chr11 104996639 104996718 -43786754 + L1MA9 LINE L1 5704 5784 -528 243 0 0 0 chr11 104996718 104996745 -43786727 + (TG)n Simple_repeat Simple_repeat 2 28 0 1717 197 50 75 chr11 104996745 104997209 -43786263 + L1MA9 LINE L1 5784 6233 -79 1928 187 19 56 chr11 104997209 104997636 -43785836 - MER21A LTR ERV1 -62 869 459 6224 204 61 6 chr11 104997647 104999116 -43784356 + L1 LINE L1 2545 4093 -2053 5876 249 59 33 chr11 104999120 105001478 -43781994 + L1MC3 LINE L1 2594 5014 -1550 807 236 127 41 chr11 105001530 105001844 -43781628 - L1M4 LINE L1 -1206 4940 4600 1737 221 78 5 chr11 105001845 105002253 -43781219 + MLT1D LTR MaLR 67 504 -1 555 268 12 40 chr11 105002281 105002531 -43780941 + L1MC3 LINE L1 5382 5624 -940 1866 185 159 2 chr11 105002531 105002964 -43780508 + MLT1D LTR MaLR 1 501 -4 661 197 25 39 chr11 105002971 105003384 -43780088 + L1MC3 LINE L1 5623 5845 -746 521 202 31 8 chr11 105003397 105003526 -43779946 + L1MC3 LINE L1 7834 7965 -238 338 290 83 49 chr11 105003913 105004076 -43779396 - MIR SINE MIR -70 138 20 23 33 0 0 chr11 105005516 105005546 -43777926 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr11 105007087 105007119 -43776353 + AT_rich Low_complexity Low_complexity 1 32 0 439 18 0 0 chr11 105007145 105007202 -43776270 - AluY SINE Alu -10 300 244 411 319 72 12 chr11 105007319 105007485 -43775987 - MIR SINE MIR -56 206 31 1055 265 123 66 chr11 105007521 105007934 -43775538 + L1ME LINE L1 3876 4264 -1882 3079 84 18 16 chr11 105007934 105008386 -43775086 + L1PA13 LINE L1 5710 6162 -1 1055 265 123 66 chr11 105008386 105008853 -43774619 + L1ME LINE L1 4264 4812 -1334 854 214 57 14 chr11 105008853 105009063 -43774409 + MER58A DNA MER1_type 5 223 -1 1055 265 123 66 chr11 105009063 105009088 -43774384 + L1ME LINE L1 4812 4834 -1312 212 302 0 0 chr11 105009378 105009431 -43774041 + L2 LINE L2 2933 2985 -328 694 317 37 12 chr11 105009444 105009867 -43773605 - LTR16C LTR ERVL -3 488 24 357 300 178 85 chr11 105009879 105010066 -43773406 + L2 LINE L2 3013 3230 -83 1768 100 15 4 chr11 105010066 105010327 -43773145 + AluY SINE Alu 46 309 -2 357 300 178 85 chr11 105010327 105010386 -43773086 + L2 LINE L2 3230 3282 -31 745 160 15 8 chr11 105010389 105010520 -43772952 + MLT1A2 LTR MaLR 4 135 -239 262 233 0 0 chr11 105010588 105010648 -43772824 + MLT1A2 LTR MaLR 302 361 -4 441 316 32 11 chr11 105010685 105010872 -43772600 + L1ME LINE L1 5436 5626 -538 1224 219 13 0 chr11 105011087 105011315 -43772157 - MER8 DNA MER2_type -3 236 6 320 372 25 0 chr11 105011512 105011633 -43771839 - MIR SINE MIR -119 143 20 267 103 0 0 chr11 105011885 105011924 -43771548 + (TG)n Simple_repeat Simple_repeat 2 40 0 23 0 0 0 chr11 105012439 105012462 -43771010 + AT_rich Low_complexity Low_complexity 1 23 0 236 314 29 73 chr11 105012504 105012641 -43770831 + MIR SINE MIR 76 206 -56 310 383 116 23 chr11 105012757 105013459 -43770013 - L2 LINE L2 0 3272 2496 28 61 0 0 chr11 105014594 105014643 -43768829 + AT_rich Low_complexity Low_complexity 1 49 0 35254 108 10 16 chr11 105014707 105020889 -43762583 + L1PA7 LINE L1 11 6154 0 242 59 0 0 chr11 105021176 105021210 -43762262 - L1PA5 LINE L1 -3 6151 6118 362 280 73 60 chr11 105022073 105022223 -43761249 - MIR3 SINE MIR -30 178 27 376 252 123 39 chr11 105024199 105024354 -43759118 + MIR SINE MIR 90 257 -5 305 313 96 30 chr11 105024385 105024551 -43758921 - MER5B DNA MER1_type 0 178 2 312 280 59 34 chr11 105025432 105025550 -43757922 - MIR SINE MIR 0 262 142 1125 253 36 1 chr11 105025556 105025927 -43757545 + LTR16A LTR ERVL 16 450 0 3100 246 101 21 chr11 105027484 105029994 -43753478 - L1MCb LINE L1 -2991 3573 757 270 0 0 0 chr11 105030142 105030172 -43753300 + (A)n Simple_repeat Simple_repeat 1 30 0 6101 211 36 34 chr11 105030172 105031603 -43751869 + ERVL-C1 LTR ERVL 3844 5277 -487 1746 199 48 16 chr11 105031606 105031977 -43751495 - MLT1B LTR MaLR -7 383 1 1085 217 32 7 chr11 105031977 105032412 -43751060 + ERVL-C1 LTR ERVL 5232 5750 -14 1471 202 36 47 chr11 105032417 105032778 -43750694 + MLT2C1 LTR ERVL 1 357 -40 226 61 0 30 chr11 105032829 105032862 -43750610 + MLT2C1 LTR ERVL 366 397 0 22 0 0 0 chr11 105033762 105033784 -43749688 + AT_rich Low_complexity Low_complexity 1 22 0 360 273 0 0 chr11 105034532 105034620 -43748852 + MLT1E LTR MaLR 1 88 -566 2127 111 10 0 chr11 105034771 105035069 -43748403 - AluSg SINE Alu -9 301 1 1284 261 90 8 chr11 105035071 105035428 -43748044 + MLT1E LTR MaLR 208 593 0 200 214 18 0 chr11 105035670 105035726 -43747746 + CT-rich Low_complexity Low_complexity 2 58 0 251 84 21 84 chr11 105036187 105036282 -43747190 + (TA)n Simple_repeat Simple_repeat 1 89 0 248 377 51 45 chr11 105039630 105039922 -43743550 - L2 LINE L2 -37 3235 2942 22 0 0 0 chr11 105040041 105040063 -43743409 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 105040149 105040170 -43743302 + AT_rich Low_complexity Low_complexity 1 21 0 288 130 0 0 chr11 105040901 105040947 -43742525 + (T)n Simple_repeat Simple_repeat 1 46 0 2259 88 0 13 chr11 105041069 105041374 -43742098 - AluY SINE Alu 0 311 11 1865 216 39 39 chr11 105041846 105042337 -43741135 + MLT1D LTR MaLR 1 491 -14 547 191 0 0 chr11 105042481 105042570 -43740902 - FLAM_A SINE Alu -44 98 10 243 0 0 0 chr11 105042578 105042605 -43740867 + (TA)n Simple_repeat Simple_repeat 2 28 0 423 149 0 0 chr11 105042790 105042864 -43740608 + (CA)n Simple_repeat Simple_repeat 1 74 0 1088 316 61 57 chr11 105043004 105043780 -43739692 - ERVL LTR ERVL -3091 2673 1895 616 323 10 5 chr11 105044016 105044208 -43739264 - MIR SINE MIR -21 241 49 595 306 13 31 chr11 105044254 105044483 -43738989 - ERVL LTR ERVL -4685 1079 855 947 242 124 28 chr11 105044515 105045158 -43738314 + LTR50 LTR ERVL 1 792 -3 367 367 6 0 chr11 105045322 105045480 -43737992 - ERVL LTR ERVL -5173 591 433 390 309 101 12 chr11 105046216 105046384 -43737088 + MIR SINE MIR 10 192 -70 1111 233 47 80 chr11 105049141 105049177 -43734295 - MER110A LTR ERV1 -34 434 398 5275 85 6 1 chr11 105049177 105049862 -43733610 + LTR12 LTR ERV1 1 688 0 1111 233 47 80 chr11 105049862 105050250 -43733222 - MER110A LTR ERV1 -70 398 24 408 284 21 35 chr11 105050697 105050838 -43732634 + L2 LINE L2 3175 3313 0 353 341 122 21 chr11 105050960 105051297 -43732175 + MLT1K LTR MaLR 171 541 -47 23 0 0 0 chr11 105051316 105051339 -43732133 + AT_rich Low_complexity Low_complexity 1 23 0 1764 255 55 75 chr11 105053131 105053880 -43729592 - MER21B LTR ERV1 -124 739 6 810 275 68 56 chr11 105056424 105056925 -43726547 + MER20B DNA MER1_type 35 541 -242 17733 178 30 32 chr11 105057097 105062044 -43721428 + L1MA2 LINE L1 57 4565 -3158 186 43 0 0 chr11 105062044 105062067 -43721405 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 17733 178 30 32 chr11 105062067 105064582 -43718890 + L1MA2 LINE L1 4565 7083 -640 311 113 19 0 chr11 105064590 105064643 -43718829 + A-rich Low_complexity Low_complexity 4 57 0 3613 140 17 11 chr11 105064643 105065292 -43718180 + L1MA2 LINE L1 7071 7723 0 738 235 36 0 chr11 105065546 105065742 -43717730 - MER3 DNA MER1_type -2 207 5 575 226 0 0 chr11 105065819 105065943 -43717529 - MER3 DNA MER1_type 0 2362 2239 413 233 117 0 chr11 105065948 105066068 -43717404 - MER3 DNA MER1_type -41 168 35 * 676 226 47 26 chr11 105066054 105066244 -43717228 + LTR16A1 LTR ERVL 264 457 0 383 231 81 38 chr11 105066251 105066411 -43717061 + MER20B DNA MER1_type 616 782 -1 30 27 0 0 chr11 105066507 105066544 -43716928 + AT_rich Low_complexity Low_complexity 1 37 0 210 273 80 23 chr11 105067035 105067123 -43716349 + MIR SINE MIR 98 190 -72 1314 155 78 0 chr11 105068346 105068578 -43714894 - L1PA11 LINE L1 0 6174 5925 180 0 0 0 chr11 105068578 105068598 -43714874 + (T)n Simple_repeat Simple_repeat 1 20 0 2231 99 7 3 chr11 105068730 105069034 -43714438 - AluSp SINE Alu -8 305 1 3502 100 0 0 chr11 105069035 105069514 -43713958 - L1PA11 LINE L1 -237 5937 5459 221 283 0 0 chr11 105069534 105069587 -43713885 - MIR SINE MIR -42 220 168 517 284 59 87 chr11 105069664 105070019 -43713453 + L2 LINE L2 2969 3313 0 22 0 0 0 chr11 105071048 105071070 -43712402 + AT_rich Low_complexity Low_complexity 1 22 0 181 347 56 0 chr11 105072978 105073050 -43710422 + L3 LINE CR1 999 1074 -503 2448 24 0 3 chr11 105074300 105074590 -43708882 + L1PA2 LINE L1 5864 6152 -3 1239 212 7 39 chr11 105074616 105074899 -43708573 + MLT1D LTR MaLR 232 505 0 445 289 7 37 chr11 105075426 105075708 -43707764 - MLT1I LTR MaLR -1 408 65 207 0 0 0 chr11 105077619 105077642 -43705830 + (TG)n Simple_repeat Simple_repeat 2 24 0 343 330 120 42 chr11 105078027 105078336 -43705136 - L1MC4 LINE L1 -147 7895 7563 2025 189 3 3 chr11 105078336 105078717 -43704755 + L1PA16 LINE L1 5781 6161 -5 44059 36 5 1 chr11 105078765 105084882 -43698590 - L1PA3 LINE L1 -2 6153 13 1501 250 112 90 chr11 105084902 105086393 -43697079 - L1MC4 LINE L1 -356 7532 5944 2012 156 0 7 chr11 105086393 105086700 -43696772 - AluSx SINE Alu -7 305 1 1501 250 112 90 chr11 105086700 105086720 -43696752 - L1MC4 LINE L1 -1944 5944 5926 1127 165 0 0 chr11 105086740 105086910 -43696562 - AluJb SINE Alu -5 307 138 1354 274 32 19 chr11 105086911 105087385 -43696087 - L1MC4 LINE L1 -1890 5918 5439 25 31 0 0 chr11 105087942 105087974 -43695498 + AT_rich Low_complexity Low_complexity 1 32 0 577 66 0 0 chr11 105088178 105088254 -43695218 + MADE1 DNA Mariner 5 80 0 909 218 64 8 chr11 105088381 105088647 -43694825 + MER114 LTR ERV 85 365 -283 374 250 108 7 chr11 105088684 105088832 -43694640 + MER114 LTR ERV 471 633 -15 5879 165 18 3 chr11 105089305 105090802 -43692670 + L1MA5A LINE L1 4774 6293 -4 17778 34 6 0 chr11 105091446 105094392 -43689080 + L1PA4 LINE L1 3187 6149 -6 264 288 0 0 chr11 105094923 105094982 -43688490 + MER94 DNA DNA 72 130 -4 1822 246 122 8 chr11 105095165 105095672 -43687800 + MLT1F1 LTR MaLR 1 565 -2 25 31 0 0 chr11 105098059 105098091 -43685381 + AT_rich Low_complexity Low_complexity 1 32 0 587 212 15 0 chr11 105098123 105098255 -43685217 - MER3 DNA MER1_type -42 167 34 12711 219 36 20 chr11 105098255 105100369 -43683103 + L1MA4A LINE L1 155 2233 -4772 1820 210 51 24 chr11 105100369 105100784 -43682688 - MSTB LTR MaLR 0 426 1 12711 219 36 20 chr11 105100784 105105235 -43678237 + L1MA4A LINE L1 2233 6999 -6 524 147 43 0 chr11 105105235 105105349 -43678123 + L1MA4A LINE L1 6884 7004 -1 1742 304 65 20 chr11 105105420 105106839 -43676633 + L1ME3A LINE L1 2670 4152 -1994 308 297 115 42 chr11 105106875 105107161 -43676311 - L1MCc LINE L1 -6106 317 11 22056 172 18 9 chr11 105107282 105112473 -43670999 - L1PA11 LINE L1 0 7612 2380 3001 244 48 23 chr11 105112508 105113298 -43670174 - L1PA11 LINE L1 -6765 816 7 493 258 0 0 chr11 105113328 105113425 -43670047 - MER5A DNA MER1_type -83 106 10 570 228 0 27 chr11 105113430 105113579 -43669893 + L1ME3A LINE L1 5390 5534 -630 578 273 158 0 chr11 105113589 105113849 -43669623 + L1ME3A LINE L1 5680 5980 -190 1600 148 0 8 chr11 105113977 105114214 -43669258 - AluSx SINE Alu -77 235 1 719 205 100 0 chr11 105114214 105114404 -43669068 + Charlie4 DNA MER1_type 1739 1947 -14 269 159 0 0 chr11 105114411 105114455 -43669017 - MLT1G1 LTR MaLR 0 595 552 22 80 0 0 chr11 105114620 105114670 -43668802 + AT_rich Low_complexity Low_complexity 1 50 0 5991 131 98 67 chr11 105115022 105116268 -43667204 + pTR5 LTR ERV1 741 2025 -413 363 214 31 20 chr11 105116268 105116366 -43667106 + LTR30 LTR ERV1 544 642 -80 1434 121 5 9 chr11 105116368 105116591 -43666881 + pTR5 LTR ERV1 171 392 -2046 287 291 64 18 chr11 105117179 105117289 -43666183 + L2 LINE L2 3198 3312 -1 26 0 0 0 chr11 105117831 105117857 -43665615 + AT_rich Low_complexity Low_complexity 1 26 0 191 277 43 32 chr11 105118516 105118610 -43664862 - MIR SINE MIR -2 260 166 522 330 105 17 chr11 105118616 105118910 -43664562 + MLT1J2 LTR MaLR 70 389 -61 399 238 90 16 chr11 105118978 105119100 -43664372 - MIR SINE MIR -106 156 26 423 282 27 0 chr11 105119751 105119861 -43663611 - MER81 DNA DNA 0 114 2 235 341 43 85 chr11 105120018 105120182 -43663290 + L2 LINE L2 2903 3059 -213 194 310 40 10 chr11 105120747 105120847 -43662625 + MIR3 SINE MIR 85 187 -21 2578 26 3 7 chr11 105121312 105121614 -43661858 + AluY SINE Alu 2 302 -9 12801 187 23 16 chr11 105121634 105125166 -43658306 - L1PA15-16 LINE L1 -3417 3432 7 180 0 0 0 chr11 105125166 105125186 -43658286 + (CAA)n Simple_repeat Simple_repeat 2 21 0 247 269 65 11 chr11 105125278 105125371 -43658101 - MIR SINE MIR -41 221 124 1947 134 59 0 chr11 105126548 105126838 -43656634 + AluSx SINE Alu 1 307 -5 225 308 210 7 chr11 105127328 105127471 -43656001 + L2 LINE L2 2568 2739 -575 193 318 47 35 chr11 105128160 105128245 -43655227 - MIR SINE MIR -142 120 35 * 366 321 43 37 chr11 105128225 105128412 -43655060 + MIR SINE MIR 49 236 -26 192 289 0 0 chr11 105128427 105128465 -43655007 - L2 LINE L2 -21 3251 3214 1357 194 69 63 chr11 105129485 105129869 -43653603 - MLT1B LTR MaLR -5 500 3 470 277 191 14 chr11 105129915 105130135 -43653337 - MIR SINE MIR -2 260 2 317 244 58 0 chr11 105130276 105130362 -43653110 + MIR SINE MIR 55 145 -63 25 51 0 0 chr11 105131275 105131314 -43652158 + AT_rich Low_complexity Low_complexity 1 39 0 408 186 69 10 chr11 105131563 105131665 -43651807 + L1MA9 LINE L1 5932 6039 -273 1459 120 15 34 chr11 105131813 105132080 -43651392 + L1MA9 LINE L1 6046 6307 -5 271 23 45 23 chr11 105133018 105133062 -43650410 + (TTTTTG)n Simple_repeat Simple_repeat 2 46 0 3657 51 2 0 chr11 105133797 105134266 -43649206 - L1PA2 LINE L1 -1 6154 5685 25 31 0 0 chr11 105134773 105134805 -43648667 + AT_rich Low_complexity Low_complexity 1 32 0 312 246 90 37 chr11 105135016 105135150 -43648322 + L1MC4 LINE L1 7902 8042 0 208 255 20 10 chr11 105135161 105135263 -43648209 + GA-rich Low_complexity Low_complexity 4 106 0 39 0 0 0 chr11 105136119 105136158 -43647314 + AT_rich Low_complexity Low_complexity 1 39 0 248 329 97 19 chr11 105136971 105137126 -43646346 + MIR3 SINE MIR 37 203 -5 319 268 39 65 chr11 105137130 105137361 -43646111 - L1ME4a LINE L1 -6 6115 5891 313 262 96 59 chr11 105137342 105137529 -43645943 - L1ME4a LINE L1 -157 5964 5771 * 330 26 0 0 chr11 105137776 105137815 -43645657 + (TG)n Simple_repeat Simple_repeat 2 40 0 2392 64 0 0 chr11 105137815 105138098 -43645374 - AluY SINE Alu -28 283 1 1061 258 84 39 chr11 105138188 105138666 -43644806 + LTR40b LTR ERVL 3 460 -2 441 0 0 0 chr11 105139078 105139127 -43644345 + (T)n Simple_repeat Simple_repeat 1 49 0 46 0 0 0 chr11 105139139 105139185 -43644287 + GC_rich Low_complexity Low_complexity 1 46 0 317 244 58 0 chr11 105139820 105139906 -43643566 - MIR SINE MIR -63 145 55 470 277 191 14 chr11 105140047 105140267 -43643205 + MIR SINE MIR 2 260 -2 1330 201 66 62 chr11 105140313 105140698 -43642774 + MLT1B LTR MaLR 3 500 -5 193 289 0 0 chr11 105141722 105141760 -43641712 + L2 LINE L2 3214 3251 -21 372 321 43 37 chr11 105141775 105141962 -43641510 - MIR SINE MIR -26 236 49 196 318 47 35 chr11 105141942 105142027 -43641445 + MIR SINE MIR 35 120 -142 * 226 315 201 7 chr11 105142720 105142869 -43640603 - L2 LINE L2 -575 2739 2562 1921 134 59 0 chr11 105143353 105143643 -43639829 - AluSx SINE Alu -5 307 1 254 269 65 11 chr11 105144820 105144913 -43638559 + MIR SINE MIR 124 221 -41 180 0 0 0 chr11 105145005 105145025 -43638447 + (TTG)n Simple_repeat Simple_repeat 2 21 0 12767 205 29 19 chr11 105145025 105148577 -43634895 + L1PA15-16 LINE L1 7 3494 -3355 2172 82 6 50 chr11 105148577 105148894 -43634578 - AluY SINE Alu -8 303 1 12767 205 29 19 chr11 105148894 105150107 -43633365 + L1PA15-16 LINE L1 3494 4693 -2156 7455 30 4 0 chr11 105150107 105151080 -43632392 - L1PA4 LINE L1 -2 6153 5177 3567 51 25 4 chr11 105151080 105151552 -43631920 - L1P LINE L1 -3369 2777 2296 1402 178 39 62 chr11 105151553 105151890 -43631582 + MLT1B LTR MaLR 1 329 -61 228 185 0 0 chr11 105154266 105154320 -43629152 + T-rich Low_complexity Low_complexity 1 54 0 1982 8 0 13 chr11 105154324 105154558 -43628914 - L1PA2 LINE L1 -4 6151 5921 23 33 0 0 chr11 105154684 105154714 -43628758 + AT_rich Low_complexity Low_complexity 1 30 0 198 359 120 17 chr11 105155492 105155609 -43627863 + L2 LINE L2 3137 3265 -7 186 289 79 13 chr11 105155768 105155844 -43627628 + MIR SINE MIR 67 147 -115 244 289 53 0 chr11 105156348 105156424 -43627048 + MIR SINE MIR 160 239 -23 503 291 8 0 chr11 105156591 105156718 -43626754 - MIR SINE MIR -112 150 23 1057 236 10 0 chr11 105156721 105156920 -43626552 - MER58A DNA MER1_type -17 207 7 1485 276 77 33 chr11 105158126 105158734 -43624738 - MLT1E2 LTR MaLR 0 626 7 1080 205 24 9 chr11 105158772 105158982 -43624490 + MER58A DNA MER1_type 12 224 0 2180 109 7 0 chr11 105159799 105160103 -43623369 + AluSq SINE Alu 1 306 -7 238 427 36 0 chr11 105161163 105161273 -43622199 + L2 LINE L2 3139 3252 -20 499 332 19 15 chr11 105161274 105161533 -43621939 + MIR SINE MIR 1 260 -2 35 41 0 0 chr11 105163309 105163358 -43620114 + AT_rich Low_complexity Low_complexity 1 49 0 515 208 30 99 chr11 105163470 105163672 -43619800 + L1M4 LINE L1 4421 4608 -1538 21 0 0 0 chr11 105163738 105163759 -43619713 + AT_rich Low_complexity Low_complexity 1 21 0 1864 284 127 64 chr11 105163798 105163936 -43619536 - L2 LINE L2 0 3313 3185 2013 136 3 0 chr11 105163936 105164231 -43619241 - AluSx SINE Alu -16 296 1 1864 284 127 64 chr11 105164231 105164390 -43619082 - L2 LINE L2 -128 3185 3037 1240 124 15 0 chr11 105164390 105164591 -43618881 - L1MA2 LINE L1 0 6304 6101 1864 284 127 64 chr11 105164591 105165616 -43617856 - L2 LINE L2 -276 3037 1899 1964 161 127 11 chr11 105165641 105166075 -43617397 - MER31A LTR ERV1 0 543 1 228 373 40 69 chr11 105166575 105166822 -43616650 - L2 LINE L2 -32 3240 3001 487 327 15 39 chr11 105168043 105168248 -43615224 + MIR SINE MIR 33 232 -30 1447 191 36 55 chr11 105168553 105168914 -43614558 + L1 LINE L1 3856 4209 -1937 192 40 0 0 chr11 105168944 105168969 -43614503 + (TG)n Simple_repeat Simple_repeat 2 26 0 1188 37 0 0 chr11 105169130 105169264 -43614208 + AluY SINE Alu 1 134 -177 2207 86 3 3 chr11 105169264 105169567 -43613905 + AluY SINE Alu 1 303 -8 239 362 36 0 chr11 105170051 105170189 -43613283 - L1MC/D LINE L1 -2277 5531 5389 1508 210 82 53 chr11 105170247 105170738 -43612734 - MLT1D LTR MaLR 0 505 1 304 376 17 28 chr11 105170874 105171052 -43612420 + MIR SINE MIR 1 176 -86 215 267 25 124 chr11 105171116 105171277 -43612195 - L2 LINE L2 -4 3309 3165 1760 208 0 59 chr11 105171298 105171702 -43611770 + MLT1B LTR MaLR 1 380 -10 189 283 17 0 chr11 105171710 105171770 -43611702 - L2 LINE L2 -157 3156 3096 1887 151 13 0 chr11 105172417 105172715 -43610757 - AluJo SINE Alu -10 302 1 241 315 19 56 chr11 105173045 105173153 -43610319 - L3 LINE CR1 -106 1471 1368 281 180 49 0 chr11 105173179 105173240 -43610232 - L1MC3 LINE L1 -21 7764 7701 450 257 0 18 chr11 105173241 105173350 -43610122 + MER31B LTR ERV1 1 107 -359 6487 203 58 45 chr11 105173373 105175470 -43608002 - L1MC3 LINE L1 -744 5402 4909 1641 250 68 49 chr11 105175484 105175909 -43607563 - L1MC3 LINE L1 -2769 3377 2961 252 100 0 0 chr11 105175909 105175949 -43607523 + (TA)n Simple_repeat Simple_repeat 2 41 0 1641 250 68 49 chr11 105175949 105176401 -43607071 - L1MC3 LINE L1 -3185 2961 2461 5474 159 34 14 chr11 105176401 105177786 -43605686 - L1MA6 LINE L1 0 6300 2442 962 47 0 115 chr11 105177786 105177934 -43605538 - AluY SINE Alu -180 131 1 9904 194 22 5 chr11 105177934 105180136 -43603336 - L1 LINE L1 -776 6789 4494 2196 161 2 7 chr11 105180133 105180537 -43602935 - L1 LINE L1 -1536 6029 5628 * 243 83 0 0 chr11 105180594 105180630 -43602842 - L1 LINE L1 -4226 3339 3304 * 16924 208 63 9 chr11 105180629 105181819 -43601653 - L1 LINE L1 -3064 4501 3376 7035 56 2 0 chr11 105181819 105183114 -43600358 + L1PA7 LINE L1 4835 6152 -2 16924 208 63 9 chr11 105183114 105186170 -43597302 - L1 LINE L1 -4189 3376 22 2249 226 31 28 chr11 105186173 105186921 -43596551 - L1MCa LINE L1 -2629 3935 3186 3727 152 1 35 chr11 105186925 105187588 -43595884 - L1PA14 LINE L1 0 6161 5521 2406 250 52 39 chr11 105187588 105189110 -43594362 - L1 LINE L1 -3680 2670 1172 203 0 37 0 chr11 105189110 105189137 -43594335 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 2406 250 52 39 chr11 105189137 105189256 -43594216 - L1 LINE L1 -5178 1172 1056 342 143 0 0 chr11 105189279 105189335 -43594137 + L1MCa LINE L1 2146 2201 -4225 527 334 60 36 chr11 105189421 105189837 -43593635 - L1 LINE L1 -5302 979 554 451 239 64 5 chr11 105190021 105190209 -43593263 - L1MCa LINE L1 -3685 2665 2467 431 264 36 7 chr11 105190201 105190341 -43593131 - L1MCa LINE L1 -5333 1017 874 * 7156 20 5 0 chr11 105190338 105191168 -43592304 - L1PA4 LINE L1 -2 6153 5320 250 88 0 0 chr11 105191169 105191203 -43592269 + L1P LINE L1 3222 3255 -2891 * 2864 271 40 46 chr11 105191198 105192301 -43591171 - L1MCa LINE L1 -4949 882 -213 196 370 49 0 chr11 105192323 105192404 -43591068 - L3 LINE CR1 -200 1377 1293 343 319 103 14 chr11 105192514 105192683 -43590789 - MIR SINE MIR -67 141 3 1994 239 26 55 chr11 105192784 105193365 -43590107 - MER74B LTR ERVL 0 622 59 2327 96 0 0 chr11 105194232 105194525 -43588947 - AluSc SINE Alu -16 293 1 230 308 107 53 chr11 105195737 105195906 -43587566 + HAL1 LINE L1 40 217 -2290 300 300 67 88 chr11 105196060 105196300 -43587172 + HAL1 LINE L1 1170 1404 -1103 521 241 117 43 chr11 105196365 105196689 -43586783 + HAL1 LINE L1 1400 1747 -760 267 31 0 0 chr11 105197524 105197556 -43585916 + (TC)n Simple_repeat Simple_repeat 1 32 0 2123 120 3 0 chr11 105198420 105198712 -43584760 + AluSx SINE Alu 6 298 -14 228 286 71 0 chr11 105198822 105198906 -43584566 + MIR SINE MIR 171 260 -2 3218 114 7 0 chr11 105199210 105199674 -43583798 - L1PA15 LINE L1 -23 6142 5676 2397 100 0 0 chr11 105199713 105200022 -43583450 - AluSc SINE Alu 0 309 1 326 287 29 29 chr11 105200221 105200357 -43583115 + L1ME2 LINE L1 6029 6164 0 435 344 40 36 chr11 105201910 105202160 -43581312 - MIR SINE MIR -5 257 7 309 189 30 15 chr11 105202977 105203109 -43580363 + (TA)n Simple_repeat Simple_repeat 2 135 0 223 267 40 27 chr11 105204295 105204370 -43579102 + MIR SINE MIR 62 137 -71 2164 86 4 4 chr11 105204598 105204901 -43578571 + AluY SINE Alu 2 304 0 3056 155 36 77 chr11 105206237 105206909 -43576563 - MER73 LTR ERVL 0 644 1 395 257 150 48 chr11 105210412 105210599 -43572873 + MIR SINE MIR 3 208 -54 212 284 0 34 chr11 105210984 105211072 -43572400 + CT-rich Low_complexity Low_complexity 3 87 0 246 225 42 28 chr11 105211242 105211313 -43572159 + L2 LINE L2 3197 3268 -4 211 278 0 0 chr11 105211956 105212010 -43571462 - MIR SINE MIR -6 256 203 1466 283 133 46 chr11 105213411 105214331 -43569141 - L2 LINE L2 -66 3247 2261 891 141 26 0 chr11 105214348 105214504 -43568968 + L1MA10 LINE L1 6171 6330 -4 1988 118 28 3 chr11 105214799 105215087 -43568385 + AluSc SINE Alu 1 295 -14 201 74 0 0 chr11 105215213 105215240 -43568232 + (A)n Simple_repeat Simple_repeat 1 27 0 1964 141 7 10 chr11 105215365 105215671 -43567801 - AluSx SINE Alu -7 305 1 21 0 0 0 chr11 105215848 105215869 -43567603 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 105216351 105216372 -43567100 + AT_rich Low_complexity Low_complexity 1 21 0 265 339 24 54 chr11 105216413 105216581 -43566891 - MIR SINE MIR -57 205 43 408 286 68 8 chr11 105218068 105218201 -43565271 + MIR SINE MIR 47 187 -75 23 0 0 0 chr11 105218710 105218733 -43564739 + AT_rich Low_complexity Low_complexity 1 23 0 188 188 0 0 chr11 105220236 105220268 -43563204 + MIR SINE MIR 120 151 -111 2160 150 31 0 chr11 105220481 105220834 -43562638 - THE1B LTR MaLR 0 364 1 186 246 35 35 chr11 105221792 105221849 -43561623 + L2 LINE L2 3216 3272 0 376 264 72 16 chr11 105222045 105222170 -43561302 + MIR SINE MIR 118 249 -13 465 232 57 78 chr11 105223031 105223311 -43560161 - MLT2B1 LTR ERVL -78 442 93 3738 143 40 0 chr11 105223313 105224350 -43559122 + L1PA13 LINE L1 4986 6157 -6 232 98 235 0 chr11 105224361 105224412 -43559060 - MLT2B1 LTR ERVL -351 63 1 1490 186 19 101 chr11 105224532 105224957 -43558515 - MLT1B LTR MaLR 0 390 1 252 59 0 0 chr11 105225704 105225738 -43557734 + (TG)n Simple_repeat Simple_repeat 2 35 0 427 229 49 49 chr11 105225739 105225860 -43557612 - MER21B LTR ERV1 -86 777 657 1699 167 85 23 chr11 105225860 105226213 -43557259 - THE1C LTR MaLR 0 375 1 * 2743 256 61 8 chr11 105226213 105226832 -43556640 - MER21B LTR ERV1 -198 665 13 372 282 89 13 chr11 105227146 105227443 -43556029 - L1ME LINE L1 -582 5582 5264 2124 128 42 31 chr11 105228189 105228549 -43554923 + THE1B LTR MaLR 1 364 0 656 253 31 0 chr11 105229717 105229879 -43553593 - MER63A DNA MER1_type 0 210 44 21 0 0 0 chr11 105229886 105229907 -43553565 + AT_rich Low_complexity Low_complexity 1 21 0 272 302 47 12 chr11 105229931 105230017 -43553455 + LTR33 LTR ERVL 129 217 -304 627 142 0 44 chr11 105230207 105230320 -43553152 + AluSg/x SINE Alu 196 303 -9 226 184 20 0 chr11 105230320 105230369 -43553103 + LTR33 LTR ERVL 415 464 -57 257 170 0 0 chr11 105231506 105231553 -43551919 + MLT2B1 LTR ERVL 473 519 -1 1951 213 34 70 chr11 105231950 105232517 -43550955 + MLT2B3 LTR ERVL 1 546 -8 327 169 15 15 chr11 105233136 105233201 -43550271 + MER3 DNA MER1_type 46 110 -99 1112 138 0 3 chr11 105233206 105233432 -43550040 + AluSx SINE Alu 1 298 -14 289 247 157 14 chr11 105233444 105233667 -43549805 + MER3 DNA MER1_type 2369 2623 0 306 315 104 31 chr11 105234385 105234607 -43548865 + L1ME LINE L1 723 960 -5110 493 174 0 0 chr11 105234611 105234703 -43548769 - L1MA4 LINE L1 -108 6192 6101 609 128 0 34 chr11 105234731 105234848 -43548624 + L1MA4 LINE L1 6187 6299 -1 3740 180 44 92 chr11 105235009 105235926 -43547546 - MER21A LTR ERV1 -50 881 9 274 310 82 0 chr11 105236070 105236254 -43547218 + L1M1 LINE L1 2700 2898 -4667 * 2512 174 49 2 chr11 105236236 105236794 -43546678 - L1MC/D LINE L1 -573 5760 5176 2774 204 31 13 chr11 105237405 105238008 -43545464 - MER90 LTR ERV1 0 614 1 1458 304 103 20 chr11 105238854 105239799 -43543673 + L2 LINE L2 2270 3300 -13 267 31 0 0 chr11 105239799 105239831 -43543641 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 4105 151 1 9 chr11 105240129 105240816 -43542656 - L1PB3 LINE L1 0 6154 5473 6331 101 17 28 chr11 105240808 105247027 -43536445 - L1PA10 LINE L1 -16 6152 11 5245 227 66 23 chr11 105247038 105251456 -43532016 - L1PBa LINE L1 -3169 3693 12 22 0 0 0 chr11 105251552 105251574 -43531898 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr11 105251719 105251743 -43531729 + AT_rich Low_complexity Low_complexity 1 24 0 417 297 151 17 chr11 105252141 105252373 -43531099 + LTR16A1 LTR ERVL 195 457 0 3993 183 13 9 chr11 105253872 105254565 -43528907 + MER44D DNA MER2_type 3 570 -35 1374 265 51 22 chr11 105255671 105256162 -43527310 - L1ME1 LINE L1 -5 6161 5657 464 273 165 79 chr11 105256162 105256568 -43526904 + LTR16B LTR ERVL 6 446 -18 582 330 52 30 chr11 105256652 105257016 -43526456 - HERV16 LTR ERVL -4135 861 490 550 359 101 10 chr11 105257525 105257932 -43525540 - LTR16A LTR ERVL -6 444 1 2649 237 87 48 chr11 105257938 105259363 -43524109 - L1ME1 LINE L1 -559 5607 4115 2088 209 28 68 chr11 105259363 105260000 -43523472 - LTR9 LTR ERV1 0 612 1 2649 237 87 48 chr11 105260000 105260104 -43523368 - L1ME1 LINE L1 -2051 4115 4017 27 0 0 0 chr11 105261008 105261035 -43522437 + AT_rich Low_complexity Low_complexity 1 27 0 270 374 8 0 chr11 105261065 105261188 -43522284 + L2 LINE L2 2503 2626 -688 622 178 14 7 chr11 105261457 105261603 -43521869 + L1MA9 LINE L1 6159 6305 -7 21 0 0 0 chr11 105261824 105261845 -43521627 + AT_rich Low_complexity Low_complexity 1 21 0 468 232 219 0 chr11 105261904 105262059 -43521413 + L1ME LINE L1 5511 5699 -422 3213 129 71 70 chr11 105262645 105263104 -43520368 + L1MC1 LINE L1 5587 6049 -284 2417 68 3 0 chr11 105263104 105263412 -43520060 - AluY SINE Alu -2 309 1 3213 129 71 70 chr11 105263412 105263694 -43519778 + L1MC1 LINE L1 6049 6329 -4 254 290 181 0 chr11 105264168 105264323 -43519149 - HAL1 LINE L1 -839 1668 1486 * 610 228 40 0 chr11 105264321 105264470 -43519002 - L1MA10 LINE L1 0 6334 6180 313 234 70 93 chr11 105264824 105265038 -43518434 - L1M4 LINE L1 -5069 1473 1265 2012 142 0 3 chr11 105268239 105268541 -43514931 + AluSc SINE Alu 1 301 -8 1895 164 3 0 chr11 105268541 105268846 -43514626 + AluY SINE Alu 1 306 -5 212 296 52 43 chr11 105268997 105269112 -43514360 + MIR SINE MIR 1 116 -146 292 0 0 0 chr11 105269137 105269176 -43514296 - L1PA3 LINE L1 -3 6152 6114 237 233 33 0 chr11 105269198 105269258 -43514214 + MIR SINE MIR 145 206 -56 421 225 162 29 chr11 105269508 105269681 -43513791 + MER117 DNA MER1_type 2 197 0 209 204 20 0 chr11 105271463 105271512 -43511960 + (TGG)n Simple_repeat Simple_repeat 1 50 0 251 306 139 19 chr11 105271681 105271897 -43511575 - MIR SINE MIR 0 262 21 24 0 0 0 chr11 105272321 105272345 -43511127 + AT_rich Low_complexity Low_complexity 1 24 0 1767 65 0 9 chr11 105274795 105275025 -43508447 - L1PA8 LINE L1 -9 6163 5936 3211 190 38 45 chr11 105275063 105275426 -43508046 - L1PA16 LINE L1 -17 6149 5785 261 0 0 0 chr11 105275426 105275455 -43508017 + (TG)n Simple_repeat Simple_repeat 2 30 0 3211 190 38 45 chr11 105275455 105275891 -43507581 - L1PA16 LINE L1 -381 5785 5348 1541 57 0 0 chr11 105275891 105276083 -43507389 - L1PA5 LINE L1 -2 6152 5961 3211 190 38 45 chr11 105276083 105276566 -43506906 - L1PA16 LINE L1 -818 5348 4873 266 354 108 28 chr11 105276772 105276984 -43506488 + MIR SINE MIR 19 247 -15 608 225 64 114 chr11 105277018 105277378 -43506094 - MER2 DNA MER2_type -1 343 2 2806 3 0 0 chr11 105279142 105279444 -43504028 + AluYa5 SINE Alu 1 302 -9 12801 187 23 16 chr11 105279464 105282996 -43500476 - L1PA15-16 LINE L1 -3417 3432 7 180 0 0 0 chr11 105282996 105283016 -43500456 + (CAA)n Simple_repeat Simple_repeat 2 21 0 247 269 65 11 chr11 105283108 105283201 -43500271 - MIR SINE MIR -41 221 124 1985 133 58 0 chr11 105284378 105284671 -43498801 + AluSx SINE Alu 1 310 -2 225 308 210 7 chr11 105285161 105285304 -43498168 + L2 LINE L2 2568 2739 -575 183 318 47 35 chr11 105285997 105286082 -43497390 - MIR SINE MIR -142 120 35 * 366 321 43 37 chr11 105286062 105286249 -43497223 + MIR SINE MIR 49 236 -26 192 289 0 0 chr11 105286264 105286302 -43497170 - L2 LINE L2 -21 3251 3214 1297 200 58 64 chr11 105287326 105287698 -43495774 - MLT1B LTR MaLR -5 500 20 2884 3 0 0 chr11 105288171 105288482 -43494990 + AluYa5 SINE Alu 1 311 0 23 0 0 0 chr11 105288592 105288615 -43494857 + AT_rich Low_complexity Low_complexity 1 23 0 1361 226 86 117 chr11 105289123 105289695 -43493777 + MLT2B3 LTR ERVL 1 554 0 1400 156 121 8 chr11 105290661 105290917 -43492555 - AluJb SINE Alu -26 286 2 252 307 20 87 chr11 105291387 105291537 -43491935 + MIR SINE MIR 2 141 -121 220 333 42 0 chr11 105291590 105291686 -43491786 - MIR SINE MIR -29 233 134 294 121 17 35 chr11 105294115 105294173 -43489299 - THE1B LTR MaLR -303 61 5 428 316 51 30 chr11 105296134 105296371 -43487101 + ERVL LTR ERVL 2104 2345 -3309 927 234 38 88 chr11 105297361 105297779 -43485693 - MLT2C1 LTR ERVL 0 397 1 287 298 50 0 chr11 105298625 105298746 -43484726 + L2 LINE L2 2524 2650 -664 11196 238 77 38 chr11 105299358 105302687 -43480785 - L1PB4 LINE L1 0 7218 4023 2249 103 6 13 chr11 105302687 105302998 -43480474 + AluSc SINE Alu 1 309 0 11196 238 77 38 chr11 105302998 105306498 -43476974 - L1PB4 LINE L1 -3195 4023 83 351 344 49 72 chr11 105306793 105307183 -43476289 + L2 LINE L2 2892 3272 0 644 288 57 44 chr11 105307442 105307758 -43475714 + ERVL LTR ERVL 2063 2382 -3382 1045 148 28 0 chr11 105307854 105308030 -43475442 - L1PA16 LINE L1 -9 6157 5977 2256 351 63 23 chr11 105308182 105309690 -43473782 + ERVL LTR ERVL 2552 4119 -1645 586 316 92 47 chr11 105309700 105310273 -43473199 + ERVL LTR ERVL 4556 5154 -610 2444 70 0 13 chr11 105310406 105310721 -43472751 + AluY SINE Alu 1 311 0 423 313 136 69 chr11 105311094 105311529 -43471943 + LTR33 LTR ERVL 58 521 0 2179 110 3 7 chr11 105311801 105312102 -43471370 - AluSc SINE Alu -9 300 1 641 280 133 78 chr11 105314146 105314903 -43468569 + HAL1 LINE L1 75 789 -1718 396 0 0 0 chr11 105314903 105314947 -43468525 + (TG)n Simple_repeat Simple_repeat 2 45 0 641 280 133 78 chr11 105314947 105315087 -43468385 + HAL1 LINE L1 789 920 -1587 1997 126 0 0 chr11 105315087 105315364 -43468108 + AluSx SINE Alu 1 277 -35 198 0 0 0 chr11 105315364 105315386 -43468086 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 641 280 133 78 chr11 105315386 105315756 -43467716 + HAL1 LINE L1 919 1414 -1093 387 325 107 58 chr11 105315899 105316330 -43467142 + HAL1 LINE L1 1573 2024 -483 294 272 64 16 chr11 105316342 105316467 -43467005 - MIR SINE MIR -10 252 122 361 199 36 0 chr11 105316533 105316633 -43466839 + HAL1b LINE L1 821 2316 -191 351 217 48 90 chr11 105317541 105317707 -43465765 + HAL1 LINE L1 2335 2493 -14 5701 97 30 19 chr11 105317886 105318582 -43464890 + L1PA13 LINE L1 4697 5384 -779 2035 125 7 3 chr11 105318582 105318879 -43464593 + AluSx SINE Alu 1 298 -14 5701 97 30 19 chr11 105318879 105319637 -43463835 + L1PA13 LINE L1 5384 6160 -3 1164 224 212 5 chr11 105319692 105320116 -43463356 + MER63 DNA MER1_type 550 1061 0 35 63 0 0 chr11 105320393 105320456 -43463016 + AT_rich Low_complexity Low_complexity 1 63 0 832 251 344 38 chr11 105320572 105321043 -43462429 - L1PA13 LINE L1 -5250 1537 923 * 955 183 10 56 chr11 105321034 105321231 -43462241 - L1PA13 LINE L1 -6261 526 339 * 6117 163 33 12 chr11 105321229 105322649 -43460823 - L1PA12 LINE L1 -5577 2004 1 1319 219 11 4 chr11 105322652 105322926 -43460546 - MLT1D LTR MaLR -227 278 3 411 289 147 19 chr11 105322950 105323161 -43460311 - L2 LINE L2 -1261 2053 1816 261 0 0 0 chr11 105323929 105323958 -43459514 + (A)n Simple_repeat Simple_repeat 1 29 0 921 235 70 50 chr11 105325903 105326261 -43457211 - MLT1A1 LTR MaLR 0 365 1 6176 230 87 44 chr11 105326876 105328283 -43455189 - L1MB8 LINE L1 0 6989 5644 2199 169 45 14 chr11 105328283 105328702 -43454770 - MSTB1 LTR MaLR 0 432 1 6176 230 87 44 chr11 105328702 105329668 -43453804 - L1MB8 LINE L1 -1345 5644 4721 270 95 0 0 chr11 105329668 105329710 -43453762 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 6176 230 87 44 chr11 105329710 105330785 -43452687 - L1MB8 LINE L1 -2268 4721 3395 944 195 11 0 chr11 105330796 105330970 -43452502 - L1MB8 LINE L1 -5564 1295 1120 3101 249 87 28 chr11 105330980 105331977 -43451495 - L1MB8 LINE L1 -5803 1056 1 195 139 0 0 chr11 105332282 105332318 -43451154 + (CA)n Simple_repeat Simple_repeat 1 36 0 25 75 0 0 chr11 105333509 105333562 -43449910 + AT_rich Low_complexity Low_complexity 1 53 0 2043 89 54 7 chr11 105333888 105334189 -43449283 + AluSx SINE Alu 1 314 0 381 321 63 39 chr11 105334199 105334707 -43448765 + HAL1b LINE L1 95 614 -734 21 0 0 0 chr11 105335259 105335280 -43448192 + AT_rich Low_complexity Low_complexity 1 21 0 4922 239 100 35 chr11 105335303 105337841 -43445631 + L1M2b LINE L1 1 3363 -3845 5719 93 43 2 chr11 105337843 105339607 -43443865 + L1PA13 LINE L1 4318 6152 -11 4971 219 93 1 chr11 105339618 105340978 -43442494 + L1M2b LINE L1 4328 5812 -1396 * 11755 174 42 17 chr11 105340976 105342596 -43440876 + L1M1 LINE L1 17 1594 -5971 213 39 0 0 chr11 105342596 105342622 -43440850 + (GA)n Simple_repeat Simple_repeat 2 27 0 11755 174 42 17 chr11 105342622 105347124 -43436348 + L1M1 LINE L1 1594 6445 -1120 251 98 314 0 chr11 105347121 105347172 -43436300 + L1M1 LINE L1 7096 7162 -561 * 21 0 0 0 chr11 105348624 105348645 -43434827 + AT_rich Low_complexity Low_complexity 1 21 0 388 313 153 6 chr11 105349507 105349670 -43433802 - MIR3 SINE MIR -6 202 16 1683 93 4 0 chr11 105350088 105350324 -43433148 - L1PA8 LINE L1 -5 6167 5931 5135 65 26 1 chr11 105350325 105351256 -43432216 + L1PA8 LINE L1 4992 5941 -231 25 0 0 0 chr11 105351308 105351333 -43432139 + AT_rich Low_complexity Low_complexity 1 25 0 335 363 7 7 chr11 105351441 105351576 -43431896 + L2 LINE L2 2926 3060 -212 23 68 0 0 chr11 105352305 105352349 -43431123 + AT_rich Low_complexity Low_complexity 1 44 0 3677 96 8 6 chr11 105353056 105353566 -43429906 + MER9 LTR ERVK 1 511 0 251 186 98 78 chr11 105353829 105353931 -43429541 - LTR47B LTR ERVL -60 383 280 428 340 40 43 chr11 105354631 105354957 -43428515 - PABL_B-int LTR ERV1 -599 6523 6199 301 311 67 53 chr11 105356159 105356442 -43427030 - HERV16 LTR ERVL -1282 4061 3775 401 211 154 0 chr11 105356530 105356634 -43426838 - L2 LINE L2 -1 3312 3193 1342 248 83 44 chr11 105356901 105357381 -43426091 + MLT1D LTR MaLR 7 505 0 378 304 56 16 chr11 105357603 105357825 -43425647 - L1 LINE L1 -2329 3817 3587 190 70 93 0 chr11 105357868 105357911 -43425561 + T-rich Low_complexity Low_complexity 3 49 0 634 312 64 17 chr11 105358477 105358711 -43424761 + MIR SINE MIR 18 262 0 32 67 0 0 chr11 105359628 105359688 -43423784 + AT_rich Low_complexity Low_complexity 1 60 0 184 151 19 19 chr11 105359877 105359930 -43423542 + GA-rich Low_complexity Low_complexity 3 55 0 240 35 0 0 chr11 105360047 105360076 -43423396 + (TA)n Simple_repeat Simple_repeat 1 29 0 393 222 101 10 chr11 105360229 105360328 -43423144 + MIR SINE MIR 84 191 -71 25 51 0 0 chr11 105360395 105360434 -43423038 + AT_rich Low_complexity Low_complexity 1 39 0 292 242 48 24 chr11 105360442 105360566 -43422906 + MIR SINE MIR 134 260 -2 33 66 0 0 chr11 105361408 105361469 -43422003 + AT_rich Low_complexity Low_complexity 1 61 0 4571 49 0 0 chr11 105361648 105362220 -43421252 + L1PA5 LINE L1 2517 3088 -3058 992 40 40 0 chr11 105362217 105362343 -43421129 - L1P2 LINE L1 -548 5606 5476 * 7326 36 21 0 chr11 105362363 105363443 -43420029 - L1PA4 LINE L1 -7 6148 5062 * 15207 45 6 1 chr11 105363440 105366104 -43417368 + L1PA5 LINE L1 3489 6158 0 2074 225 35 18 chr11 105367450 105367904 -43415568 + MER70A LTR ERVL 7 468 -4 418 345 46 6 chr11 105368368 105368542 -43414930 - HERV16 LTR ERVL -4815 181 1 706 270 81 42 chr11 105368542 105368849 -43414623 - LTR16A1 LTR ERVL 0 457 139 861 348 89 30 chr11 105369035 105370151 -43413321 - HERVL LTR ERVL -1198 4566 3337 663 314 48 28 chr11 105370202 105370556 -43412916 - HERVL LTR ERVL -2777 2219 1859 186 171 0 0 chr11 105371640 105371681 -43411791 + (TA)n Simple_repeat Simple_repeat 2 42 0 1007 223 22 4 chr11 105371776 105372045 -43411427 + L1ME2 LINE L1 5258 5531 -633 453 271 19 26 chr11 105372079 105372234 -43411238 + LTR41 LTR ERVL 1 154 -619 536 212 25 86 chr11 105372300 105372498 -43410974 + L1ME2 LINE L1 5978 6163 -1 237 337 66 15 chr11 105373647 105373768 -43409704 - MIR SINE MIR -78 130 2 21 82 0 0 chr11 105374767 105374816 -43408656 + AT_rich Low_complexity Low_complexity 1 49 0 895 305 17 32 chr11 105375177 105375525 -43407947 - L2 LINE L2 -18 3295 2953 1166 319 145 9 chr11 105375606 105376242 -43407230 - L2 LINE L2 -458 2856 2135 226 236 18 0 chr11 105376242 105376297 -43407175 + GA-rich Low_complexity Low_complexity 2 57 0 1026 191 82 0 chr11 105376351 105376571 -43406901 - MLT1D LTR MaLR 0 505 268 10676 183 21 7 chr11 105376573 105379585 -43403887 - L1PA13 LINE L1 -1 6162 3122 2631 86 58 23 chr11 105379587 105379984 -43403488 + MLT2A1 LTR ERVL 1 411 -33 258 73 109 0 chr11 105379984 105380094 -43403378 + (TA)n Simple_repeat Simple_repeat 1 122 0 306 123 70 0 chr11 105380095 105380152 -43403320 + MLT2A1 LTR ERVL 460 520 0 3310 75 16 0 chr11 105380152 105380590 -43402882 + HERVL-A1-A1 LTR ERVL 1 445 -5209 8800 87 19 0 chr11 105380591 105381772 -43401700 + HERVL-A1-A1 LTR ERVL 927 2130 -3524 * 24996 84 9 8 chr11 105381767 105385090 -43398382 + HERVL-A1-A1 LTR ERVL 2329 5654 0 2708 113 20 5 chr11 105385090 105385488 -43397984 + MLT2A1 LTR ERVL 1 404 -40 287 185 0 0 chr11 105385526 105385580 -43397892 + MLT2A1 LTR ERVL 464 517 -3 8265 220 27 18 chr11 105385587 105387657 -43395815 - L1PA13 LINE L1 -3030 3116 1028 2244 313 135 14 chr11 105387812 105388952 -43394520 - L2 LINE L2 -1833 1481 204 2167 91 30 10 chr11 105388952 105389250 -43394222 + AluY SINE Alu 1 304 -7 607 215 7 47 chr11 105389750 105389899 -43393573 + FLAM_C SINE Alu 1 143 0 323 284 45 0 chr11 105389995 105390083 -43393389 + MIR SINE MIR 101 192 -70 554 311 64 0 chr11 105391366 105391601 -43391871 - LTR33A LTR ERVL -8 515 266 266 243 93 65 chr11 105391694 105391801 -43391671 - LTR33A LTR ERVL -311 212 103 413 313 157 32 chr11 105391891 105392268 -43391204 - MLT1J2 LTR MaLR -26 424 1 417 327 38 6 chr11 105392704 105392863 -43390609 - MIR3 SINE MIR -13 195 32 380 346 66 6 chr11 105393777 105393959 -43389513 - L3 LINE CR1 -35 1542 1350 1937 178 111 10 chr11 105394074 105394461 -43389011 - MSTB LTR MaLR 0 426 1 529 326 32 64 chr11 105394652 105395087 -43388385 + LTR16B LTR ERVL 37 457 -7 2335 91 0 0 chr11 105395993 105396289 -43387183 + AluSq SINE Alu 1 296 -17 547 155 52 0 chr11 105396351 105396467 -43387005 + AluJb SINE Alu 188 309 -3 218 193 181 24 chr11 105398271 105398354 -43385118 + MIR SINE MIR 100 195 -67 2308 83 0 6 chr11 105398850 105399163 -43384309 - AluY SINE Alu 0 311 1 539 333 63 5 chr11 105400325 105400514 -43382958 + MIR SINE MIR 43 242 -20 306 365 39 19 chr11 105401155 105401311 -43382161 + MIR3 SINE MIR 19 177 -31 5324 155 41 24 chr11 105403717 105405321 -43378151 + L1MA5A LINE L1 4664 6293 -4 975 192 25 0 chr11 105405556 105405759 -43377713 + MER33 DNA MER1_type 2 209 -115 3523 179 10 3 chr11 105407005 105407702 -43375770 - L1P LINE L1 -864 5282 4581 5318 116 13 12 chr11 105407730 105408549 -43374923 + L1PA13 LINE L1 5344 6163 0 1194 197 78 30 chr11 105408648 105409048 -43374424 - MER39 LTR ERV1 0 707 218 486 266 59 76 chr11 105409872 105410109 -43373363 - MLT1I LTR MaLR 0 409 177 26 0 0 0 chr11 105410801 105410827 -43372645 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr11 105412682 105412704 -43370768 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr11 105413088 105413120 -43370352 + AT_rich Low_complexity Low_complexity 1 32 0 265 328 107 7 chr11 105413760 105414031 -43369441 + L1ME LINE L1 5551 5848 -273 300 396 48 5 chr11 105415472 105415659 -43367813 + MIR SINE MIR 34 228 -34 239 301 68 38 chr11 105415908 105416041 -43367431 + MIR SINE MIR 84 220 -42 813 244 47 0 chr11 105416323 105416516 -43366956 - MER63A DNA MER1_type -8 202 1 1617 186 57 57 chr11 105417656 105418059 -43365413 - MLT2D LTR ERVL -5 409 7 334 293 193 11 chr11 105418842 105419023 -43364449 + MIR SINE MIR 49 262 0 644 208 27 7 chr11 105419394 105419543 -43363929 + L1M4 LINE L1 102 253 -6289 440 212 186 0 chr11 105419886 105420098 -43363374 + L1M4 LINE L1 537 956 -5586 579 232 73 19 chr11 105420127 105420386 -43363086 + L1M4 LINE L1 1069 1341 -5201 * 750 272 116 19 chr11 105420379 105420905 -43362567 + L1M4 LINE L1 1550 2126 -4520 1006 280 42 42 chr11 105420966 105421320 -43362152 + L1MB8 LINE L1 8 361 -6669 1537 166 137 153 chr11 105421343 105422095 -43361377 + L1 LINE L1 4606 5345 -801 6673 197 73 7 chr11 105422108 105423492 -43359980 + L1MB8 LINE L1 488 1963 -5143 4804 219 128 19 chr11 105423519 105426066 -43357406 + L1PA13 LINE L1 1 2936 -3861 8787 190 23 15 chr11 105426066 105428785 -43354687 + L1PA13 LINE L1 4039 6796 -18 4134 137 111 13 chr11 105428859 105429718 -43353754 + L1MB8 LINE L1 2009 2951 -4155 3760 206 65 22 chr11 105429707 105431481 -43351991 + L1MB8 LINE L1 5270 7118 -20 * 204 40 0 0 chr11 105431588 105431613 -43351859 + (TG)n Simple_repeat Simple_repeat 2 26 0 22 56 0 0 chr11 105431930 105431966 -43351506 + AT_rich Low_complexity Low_complexity 1 36 0 695 75 21 0 chr11 105432066 105432159 -43351313 + L1PA11 LINE L1 5509 5603 -571 1397 79 57 26 chr11 105432167 105432394 -43351078 + L1PA11 LINE L1 5941 6174 0 705 242 123 48 chr11 105432448 105432675 -43350797 + MLT2B1 LTR ERVL 219 462 -58 191 152 22 0 chr11 105432687 105432733 -43350739 + (TA)n Simple_repeat Simple_repeat 1 47 0 231 302 63 37 chr11 105433022 105433211 -43350261 - L2 LINE L2 -479 2835 2642 27 62 0 0 chr11 105433299 105433347 -43350125 + AT_rich Low_complexity Low_complexity 1 48 0 1456 190 42 0 chr11 105433515 105433804 -43349668 + AluJb SINE Alu 1 301 -11 2211 98 14 0 chr11 105433813 105434109 -43349363 + AluSq SINE Alu 2 301 -12 188 294 15 44 chr11 105435522 105435590 -43347882 - MIR SINE MIR -110 98 33 288 292 117 48 chr11 105436491 105436853 -43346619 + MLT1J2 LTR MaLR 1 393 -53 246 204 257 18 chr11 105436927 105437040 -43346432 - MIR SINE MIR -76 186 47 288 333 18 33 chr11 105437229 105437428 -43346044 + MLT1I LTR MaLR 70 249 -160 244 336 47 9 chr11 105438563 105438670 -43344802 + MIR SINE MIR 42 152 -56 216 318 24 12 chr11 105438969 105439054 -43344418 - MIR SINE MIR -128 134 49 265 249 123 0 chr11 105439551 105439672 -43343800 - L1MB8 LINE L1 -10 6156 6021 322 250 128 70 chr11 105439675 105439831 -43343641 + L1M4 LINE L1 5189 5353 -793 232 363 30 30 chr11 105439838 105439973 -43343499 - MIR SINE MIR -111 151 17 32 26 0 0 chr11 105440400 105440439 -43343033 + AT_rich Low_complexity Low_complexity 1 39 0 181 293 0 35 chr11 105441007 105441065 -43342407 - MIR SINE MIR -85 177 122 * 356 316 16 102 chr11 105441060 105441383 -43342089 + L2 LINE L2 2917 3211 -102 24 32 0 0 chr11 105441670 105441701 -43341771 + AT_rich Low_complexity Low_complexity 1 31 0 206 331 123 15 chr11 105441764 105441894 -43341578 + MIR3 SINE MIR 34 177 -31 23 0 0 0 chr11 105443633 105443656 -43339816 + AT_rich Low_complexity Low_complexity 1 23 0 265 351 63 31 chr11 105443717 105443908 -43339564 - MIR3 SINE MIR -59 203 2 428 256 22 0 chr11 105445159 105445249 -43338223 - MER81 DNA DNA -22 92 1 438 187 0 0 chr11 105445399 105445474 -43337998 - MER6B DNA MER2_type 0 210 136 * 516 171 86 0 chr11 105445463 105445568 -43337904 - MER6B DNA MER2_type -162 114 1 185 0 40 0 chr11 105445613 105445638 -43337834 + (TA)n Simple_repeat Simple_repeat 2 27 0 420 97 0 0 chr11 105446011 105446073 -43337399 + (CA)n Simple_repeat Simple_repeat 2 63 0 251 304 0 14 chr11 105446775 105446844 -43336628 + MIR SINE MIR 49 116 -92 14599 111 41 13 chr11 105447751 105450629 -43332843 + L1PA5 LINE L1 3179 6154 0 226 211 39 0 chr11 105450748 105450800 -43332672 + (CATA)n Simple_repeat Simple_repeat 2 55 0 21 0 0 0 chr11 105450924 105450945 -43332527 + AT_rich Low_complexity Low_complexity 1 21 0 192 152 0 0 chr11 105451285 105451318 -43332154 + (CATATA)n Simple_repeat Simple_repeat 2 34 0 26 0 0 0 chr11 105452299 105452325 -43331147 + AT_rich Low_complexity Low_complexity 1 26 0 275 230 54 14 chr11 105452487 105452561 -43330911 + L2 LINE L2 3232 3308 -5 1710 324 147 29 chr11 105454998 105456185 -43327287 + L2 LINE L2 1637 2963 -351 180 318 45 45 chr11 105456156 105456244 -43327228 + L2 LINE L2 3225 3312 -1 * 1318 162 183 26 chr11 105456314 105456703 -43326769 + LTR7 LTR ERV1 1 450 0 208 245 61 0 chr11 105458037 105458086 -43325386 + MIR SINE MIR 129 180 -82 2621 161 4 28 chr11 105458087 105458546 -43324926 + LOR1a LTR ERV1 1 448 -49 1658 173 60 0 chr11 105460235 105460553 -43322919 - MER44D DNA MER2_type 0 609 3 263 299 34 7 chr11 105460765 105460912 -43322560 + L1ME2 LINE L1 4883 5033 -1113 1483 202 0 31 chr11 105460931 105461218 -43322254 + AluJb SINE Alu 3 280 -32 418 301 254 14 chr11 105461375 105461934 -43321538 + L1ME2 LINE L1 5260 5950 -214 293 317 134 84 chr11 105462456 105462777 -43320695 - L2 LINE L2 -747 2567 2204 1876 111 0 8 chr11 105462777 105463055 -43320417 - AluSg SINE Alu 0 305 30 293 317 134 84 chr11 105463055 105463290 -43320182 - L2 LINE L2 -1110 2204 1982 191 394 45 0 chr11 105463302 105463434 -43320038 - L2 LINE L2 -224 3048 2911 4014 19 2 2 chr11 105465717 105466240 -43317232 - L1PA3 LINE L1 -720 5435 4913 6119 27 0 0 chr11 105466240 105466946 -43316526 + L1PA3 LINE L1 5443 6155 0 207 266 31 16 chr11 105466950 105467014 -43316458 - MER5A DNA MER1_type -50 139 75 233 341 23 23 chr11 105469164 105469252 -43314220 + L2 LINE L2 2536 2623 -691 2112 233 141 22 chr11 105470604 105471311 -43312161 + MER52A LTR ERV1 1 864 -891 2408 188 30 8 chr11 105471355 105471823 -43311649 + MER52A LTR ERV1 1278 1755 0 351 307 90 33 chr11 105471930 105472142 -43311330 + LTR33 LTR ERVL 1 224 -297 1210 285 52 63 chr11 105472231 105472280 -43311192 - LTR16B LTR ERVL -2 462 414 2581 105 5 5 chr11 105472280 105472653 -43310819 + THE1C LTR MaLR 1 373 -2 9218 122 46 39 chr11 105472656 105474224 -43309248 + THE1C-int LTR MaLR 2 1580 0 2271 141 13 13 chr11 105474224 105474599 -43308873 + THE1C LTR MaLR 1 375 0 1210 285 52 63 chr11 105474599 105475004 -43308468 - LTR16B LTR ERVL -50 414 8 241 339 110 0 chr11 105475629 105475707 -43307765 - L2 LINE L2 0 3313 3218 279 0 0 0 chr11 105475707 105475738 -43307734 + (CA)n Simple_repeat Simple_repeat 2 32 0 241 339 110 0 chr11 105475738 105475768 -43307704 - L2 LINE L2 -95 3218 3193 571 283 155 15 chr11 105478356 105478763 -43304709 - L1M4 LINE L1 -2763 3383 2920 240 252 65 24 chr11 105480166 105480289 -43303183 - L1MC4 LINE L1 -43 7999 7872 1977 289 168 31 chr11 105480384 105481445 -43302027 + L1M3e LINE L1 1 1206 -5824 1023 242 22 32 chr11 105481446 105481723 -43301749 + L1M3e LINE L1 1749 2022 -5008 290 156 0 0 chr11 105481722 105481767 -43301705 + L1M3e LINE L1 2657 2701 -4406 * 235 156 22 0 chr11 105481767 105481812 -43301660 + MADE1 DNA Mariner 35 80 0 2747 260 25 15 chr11 105481820 105482746 -43300726 + L1M4 LINE L1 2292 3226 -4339 355 239 23 0 chr11 105483047 105483135 -43300337 + L1MA7 LINE L1 5938 6027 -264 868 168 23 0 chr11 105483145 105483318 -43300154 + L1MA8 LINE L1 6110 6286 -5 229 400 9 9 chr11 105483922 105484027 -43299445 + L2 LINE L2 3168 3272 0 438 293 106 35 chr11 105485483 105485937 -43297535 + L1M4 LINE L1 5334 5819 -1746 308 286 74 40 chr11 105486476 105486651 -43296821 + L1M4 LINE L1 5843 6023 -1542 443 327 138 11 chr11 105486651 105487085 -43296387 + L1MEc LINE L1 26 514 -5882 683 297 75 31 chr11 105487261 105488058 -43295414 + L1MEc LINE L1 511 1862 -4534 37 76 0 0 chr11 105488116 105488195 -43295277 + AT_rich Low_complexity Low_complexity 1 79 0 937 249 86 69 chr11 105488323 105489173 -43294299 + L1MEc LINE L1 1924 2816 -3399 913 184 56 5 chr11 105489181 105489443 -43294029 - L1M2 LINE L1 -749 5397 5156 4394 163 18 8 chr11 105489443 105490281 -43293191 + L1MA8 LINE L1 5440 6286 -5 294 233 72 17 chr11 105490282 105490462 -43293010 + L1MEc LINE L1 2808 2997 -3218 204 322 46 11 chr11 105491898 105491985 -43291487 - L2 LINE L2 -1 3312 3223 1708 327 87 18 chr11 105491993 105492737 -43290735 + L1PA15 LINE L1 2 797 -5990 1063 231 165 9 chr11 105492821 105493155 -43290317 + L1PA15 LINE L1 1301 1686 -5101 * 5917 241 32 11 chr11 105493153 105494822 -43288650 + L1PA15 LINE L1 2871 4573 -2224 4916 152 50 7 chr11 105494843 105496015 -43287457 + L1PA15 LINE L1 5595 6816 0 608 231 7 0 chr11 105497135 105497282 -43286190 - L1MA10 LINE L1 -11 6323 6176 297 362 100 21 chr11 105497640 105497919 -43285553 + L2 LINE L2 1318 1618 -1696 1802 161 0 41 chr11 105498572 105498888 -43284584 - AluSx SINE Alu -9 303 1 2141 113 0 3 chr11 105499271 105499563 -43283909 - AluSc SINE Alu -18 291 1 258 287 172 17 chr11 105499606 105499780 -43283692 + L2 LINE L2 2677 2877 -437 546 367 47 17 chr11 105500012 105500434 -43283038 + L2 LINE L2 2868 3302 -11 502 296 74 0 chr11 105501330 105501519 -43281953 + MIR SINE MIR 54 256 -6 331 318 109 28 chr11 105501853 105502064 -43281408 - HAL1 LINE L1 -591 1916 1689 261 353 17 0 chr11 105502722 105502838 -43280634 - MER5B DNA MER1_type -15 163 46 243 0 0 0 chr11 105503851 105503878 -43279594 + (T)n Simple_repeat Simple_repeat 1 27 0 31 26 0 0 chr11 105503982 105504020 -43279452 + AT_rich Low_complexity Low_complexity 1 38 0 243 0 0 0 chr11 105504892 105504919 -43278553 + (T)n Simple_repeat Simple_repeat 1 27 0 31 26 0 0 chr11 105505022 105505060 -43278412 + AT_rich Low_complexity Low_complexity 1 38 0 258 160 0 0 chr11 105505258 105505308 -43278164 + (TG)n Simple_repeat Simple_repeat 1 50 0 23 54 0 0 chr11 105506241 105506278 -43277194 + AT_rich Low_complexity Low_complexity 1 37 0 377 188 0 0 chr11 105506735 105506799 -43276673 - MER94 DNA DNA -61 73 10 2809 276 75 30 chr11 105507639 105508426 -43275046 + L1M4b LINE L1 38 788 -6171 489 17 0 0 chr11 105508426 105508484 -43274988 + (TA)n Simple_repeat Simple_repeat 2 59 0 2809 276 75 30 chr11 105508484 105509678 -43273794 + L1M4b LINE L1 788 2168 -4791 199 325 86 68 chr11 105509781 105509944 -43273528 + MER5A DNA MER1_type 2 167 -22 483 211 75 124 chr11 105510524 105510789 -43272683 + MLT1E1 LTR MaLR 1 252 -341 984 255 64 0 chr11 105511091 105511433 -43272039 + MLT1E1 LTR MaLR 302 654 0 1913 156 0 3 chr11 105514526 105514828 -43268644 + AluSx SINE Alu 1 301 -11 2284 74 33 0 chr11 105514888 105515187 -43268285 + AluY SINE Alu 1 309 -2 293 323 13 77 chr11 105515507 105515662 -43267810 - L2 LINE L2 0 3272 3128 222 219 0 0 chr11 105515755 105515796 -43267676 + (CATATA)n Simple_repeat Simple_repeat 6 46 0 2089 124 0 7 chr11 105515855 105516162 -43267310 - AluSg1 SINE Alu -4 305 1 362 279 48 0 chr11 105516217 105516321 -43267151 + MIR SINE MIR 53 161 -101 21 0 0 0 chr11 105516907 105516928 -43266544 + AT_rich Low_complexity Low_complexity 1 21 0 906 254 56 63 chr11 105517971 105518401 -43265071 + MER110A LTR ERV1 38 464 -4 2246 39 42 7 chr11 105518511 105518794 -43264678 + AluY SINE Alu 1 293 -18 1161 212 37 85 chr11 105519010 105519470 -43264002 + MER110-int LTR ERV1 1044 3730 -3071 368 232 24 40 chr11 105519483 105519608 -43263864 - LTR41 LTR ERVL 0 773 651 6445 244 72 40 chr11 105519716 105521843 -43261629 + MER110-int LTR ERV1 2453 4647 0 1445 160 20 0 chr11 105521904 105522154 -43261318 - L1PA12 LINE L1 -299 5869 5615 5217 76 43 1 chr11 105522154 105522889 -43260583 - MER4E LTR ERV1 0 766 1 252 0 0 0 chr11 105523117 105523145 -43260327 + (A)n Simple_repeat Simple_repeat 1 28 0 826 327 34 17 chr11 105525832 105526248 -43257224 - MER4E-int LTR ERV1 -2088 2559 2137 507 327 81 32 chr11 105526678 105527132 -43256340 - MER4E-int LTR ERV1 -2918 3883 3544 2487 173 19 14 chr11 105527818 105528310 -43255162 - MER4E-int LTR ERV1 -4064 4100 129 7195 27 1 1 chr11 105528979 105529878 -43253594 + L1PA4 LINE L1 5277 6175 0 4457 149 22 37 chr11 105531112 105531897 -43251575 - MER4E-int LTR ERV1 -5973 785 13 5249 81 28 15 chr11 105531908 105532664 -43250808 - MER4E LTR ERV1 0 766 1 2323 150 27 4 chr11 105532664 105533251 -43250221 - L1P4 LINE L1 -544 5619 5019 591 229 64 21 chr11 105533260 105533448 -43250024 + MER110A LTR ERV1 239 434 -34 221 358 101 22 chr11 105533616 105533795 -43249677 + L2 LINE L2 2915 3107 -206 1229 231 113 6 chr11 105533844 105534181 -43249291 - MSTD LTR MaLR -23 373 1 191 378 52 26 chr11 105534683 105534876 -43248596 - L2 LINE L2 -1899 1415 1218 295 305 68 8 chr11 105535685 105535803 -43247669 + L2 LINE L2 3174 3298 -15 4064 146 31 51 chr11 105537378 105538218 -43245254 - L1MC1 LINE L1 0 6333 5511 24 0 0 0 chr11 105538261 105538285 -43245187 + AT_rich Low_complexity Low_complexity 1 24 0 224 254 60 0 chr11 105538853 105538920 -43244552 - MIR SINE MIR -74 188 118 235 208 21 83 chr11 105539440 105539536 -43243936 + L1MC4 LINE L1 6614 6703 -1339 228 163 0 0 chr11 105539539 105539582 -43243890 + (TG)n Simple_repeat Simple_repeat 2 44 0 288 328 37 0 chr11 105541207 105541341 -43242131 + L1ME3A LINE L1 6015 6153 -17 589 289 85 37 chr11 105541482 105541728 -43241744 - MIR SINE MIR -2 260 3 345 288 22 109 chr11 105541800 105541984 -43241488 - L2 LINE L2 -5 3308 3141 715 189 23 6 chr11 105542211 105542386 -43241086 - L1MA7 LINE L1 -1 6290 6113 2484 259 39 38 chr11 105542824 105543121 -43240351 - L1ME2 LINE L1 -3 6230 5935 952 225 98 31 chr11 105543121 105543446 -43240026 - MER7A DNA MER2_type 0 346 2 2484 259 39 38 chr11 105543446 105544493 -43238979 - L1ME2 LINE L1 -298 5935 4892 1977 270 121 32 chr11 105544529 105546402 -43237070 - L1ME2 LINE L1 -1402 4813 2770 226 60 0 120 chr11 105546415 105546465 -43237007 - L1ME2 LINE L1 -3789 2426 2383 261 0 0 0 chr11 105546635 105546664 -43236808 + (T)n Simple_repeat Simple_repeat 1 29 0 22 35 0 0 chr11 105547035 105547064 -43236408 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr11 105547064 105547084 -43236388 + (C)n Simple_repeat Simple_repeat 1 20 0 1793 172 10 0 chr11 105547089 105547397 -43236075 - AluSx SINE Alu -1 311 1 419 291 57 24 chr11 105547403 105547699 -43235773 - L1ME2 LINE L1 -4102 2294 1989 1789 233 75 122 chr11 105547700 105548843 -43234629 + MER52A LTR ERV1 666 1755 0 340 302 65 14 chr11 105548936 105549151 -43234321 - L1ME2 LINE L1 -4501 1895 1670 702 266 75 25 chr11 105549175 105549656 -43233816 + L1MC3 LINE L1 2978 3482 -2664 234 0 0 0 chr11 105549680 105549706 -43233766 + (A)n Simple_repeat Simple_repeat 1 26 0 180 0 0 0 chr11 105549919 105549939 -43233533 + (A)n Simple_repeat Simple_repeat 1 20 0 352 270 49 37 chr11 105549939 105550102 -43233370 + L1MC3 LINE L1 3510 3674 -2472 * 20654 106 13 11 chr11 105550096 105554184 -43229288 + L1PA8 LINE L1 2089 6171 -1 374 203 39 12 chr11 105554181 105554293 -43229179 + L1MC3 LINE L1 3669 3780 -2366 * 3926 245 86 34 chr11 105554317 105557064 -43226408 + L1MC3 LINE L1 3937 6920 -865 2507 65 3 0 chr11 105557064 105557374 -43226098 + AluY SINE Alu 1 311 0 3926 245 86 34 chr11 105557374 105557728 -43225744 + L1MC3 LINE L1 6920 7254 -531 2830 184 121 131 chr11 105557932 105558204 -43225268 + L1MC3 LINE L1 6637 6910 -875 1859 148 3 0 chr11 105558204 105558514 -43224958 + AluY SINE Alu 1 311 0 2830 184 121 131 chr11 105558514 105558721 -43224751 + L1MC3 LINE L1 6910 7118 -667 245 258 34 11 chr11 105558721 105558810 -43224662 + MLT1F1 LTR MaLR 35 125 -442 2830 184 121 131 chr11 105558810 105559402 -43224070 + L1MC3 LINE L1 7118 7785 0 47 82 0 0 chr11 105559784 105559894 -43223578 + AT_rich Low_complexity Low_complexity 1 110 0 22 56 0 0 chr11 105559992 105560028 -43223444 + AT_rich Low_complexity Low_complexity 1 36 0 1246 206 41 38 chr11 105560331 105560646 -43222826 + L1 LINE L1 17 332 -7233 4123 198 30 8 chr11 105560653 105561581 -43221891 + L1 LINE L1 3942 4893 -2672 2598 107 63 45 chr11 105561581 105562082 -43221390 + L1MA2 LINE L1 5791 6304 0 25 31 0 0 chr11 105562235 105562267 -43221205 + AT_rich Low_complexity Low_complexity 1 32 0 228 200 40 0 chr11 105562681 105562731 -43220741 - L1ME LINE L1 -451 5780 5729 27 0 0 0 chr11 105562732 105562759 -43220713 + AT_rich Low_complexity Low_complexity 1 27 0 778 247 132 19 chr11 105562772 105563182 -43220290 - L1ME LINE L1 -503 5728 5278 261 289 30 24 chr11 105563209 105563375 -43220097 - L1ME LINE L1 -919 5296 5130 1290 239 107 24 chr11 105563552 105564096 -43219376 - L1ME LINE L1 -1537 4678 4090 319 339 24 0 chr11 105565409 105565574 -43217898 + L1MEc LINE L1 1516 1684 -4712 21 57 0 0 chr11 105565724 105565759 -43217713 + AT_rich Low_complexity Low_complexity 1 35 0 25 51 0 0 chr11 105567141 105567180 -43216292 + AT_rich Low_complexity Low_complexity 1 39 0 247 259 59 35 chr11 105567768 105567853 -43215619 + L3 LINE CR1 1410 1496 -81 341 371 31 72 chr11 105568039 105568330 -43215142 - L2 LINE L2 -9 3263 2985 242 93 0 23 chr11 105568384 105568427 -43215045 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 260 296 136 25 chr11 105568546 105568708 -43214764 + MIR SINE MIR 5 184 -78 215 317 122 34 chr11 105568811 105569016 -43214456 + MIR SINE MIR 31 253 -9 2023 141 0 3 chr11 105569054 105569358 -43214114 + AluSg SINE Alu 1 303 -7 198 0 0 0 chr11 105569500 105569522 -43213950 + (A)n Simple_repeat Simple_repeat 1 22 0 461 259 108 16 chr11 105570562 105570747 -43212725 - MER110 LTR ERV1 -30 461 260 243 256 0 49 chr11 105570901 105570983 -43212489 - MER110A LTR ERV1 -298 170 93 554 223 27 9 chr11 105571164 105571276 -43212196 - FLAM_A SINE Alu -19 114 1 265 308 17 8 chr11 105571396 105571513 -43211959 - L1ME LINE L1 -2484 3731 3614 425 306 94 44 chr11 105571612 105571844 -43211628 - L1ME LINE L1 -2710 3505 3286 1969 143 0 3 chr11 105571844 105572144 -43211328 - AluSg SINE Alu -9 301 3 425 306 94 44 chr11 105572144 105572391 -43211081 - L1ME LINE L1 -2929 3286 3002 759 224 0 0 chr11 105572397 105572544 -43210928 - FRAM SINE Alu -28 148 2 24 0 0 0 chr11 105572544 105572568 -43210904 + AT_rich Low_complexity Low_complexity 1 24 0 318 309 62 33 chr11 105572701 105572911 -43210561 - HAL1b LINE L1 -740 608 393 1356 133 8 19 chr11 105573778 105574034 -43209438 - L1MA5A LINE L1 -3 6294 6042 2525 183 29 39 chr11 105574040 105574598 -43208874 + L1M2 LINE L1 4770 5328 -969 1969 155 3 7 chr11 105574598 105574902 -43208570 + AluSx SINE Alu 1 303 -9 2525 183 29 39 chr11 105574902 105575168 -43208304 + L1M2 LINE L1 5328 5595 -702 645 269 120 33 chr11 105575170 105575711 -43207761 - L1MEc LINE L1 -4622 1630 1023 914 300 25 39 chr11 105575833 105576273 -43207199 - L1MEc LINE L1 -5596 800 367 1679 149 43 14 chr11 105577238 105577519 -43205953 - AluSx SINE Alu -23 289 1 275 213 11 106 chr11 105577703 105577797 -43205675 + L1MDb LINE L1 204 288 -6121 1823 215 145 14 chr11 105577815 105578760 -43204712 + L1MDb LINE L1 834 1894 -4512 5878 184 52 78 chr11 105578776 105579758 -43203714 + L1MCa LINE L1 19 944 -5482 1675 162 32 51 chr11 105579758 105580073 -43203399 + AluSx SINE Alu 1 309 -3 5878 184 52 78 chr11 105580073 105580722 -43202750 + L1MCa LINE L1 944 1608 -4818 1379 162 23 30 chr11 105580753 105581018 -43202454 + AluJb SINE Alu 18 280 -32 1515 152 58 39 chr11 105581071 105581401 -43202071 - THE1C LTR MaLR -35 340 5 7623 149 86 40 chr11 105581406 105582914 -43200558 - THE1C-int LTR MaLR 0 1580 4 1543 170 46 22 chr11 105582936 105583260 -43200212 - THE1C LTR MaLR -43 332 1 1371 154 52 42 chr11 105583261 105583395 -43200077 + L1MCa LINE L1 1701 1832 -4594 2117 112 0 0 chr11 105583395 105583681 -43199791 + AluSg SINE Alu 1 286 -24 1371 154 52 42 chr11 105583681 105583852 -43199620 + L1MCa LINE L1 1832 2009 -4417 846 267 111 50 chr11 105583843 105584378 -43199094 - L1M3c LINE L1 -5028 1113 505 * 1128 276 96 48 chr11 105584440 105585401 -43198071 + L1MD2 LINE L1 4205 5211 -935 542 224 0 67 chr11 105585403 105585582 -43197890 + L1MD2 LINE L1 5951 6117 -242 3763 144 56 39 chr11 105585582 105586458 -43197014 + MER11B LTR ERVK 1 1146 -120 1032 80 43 0 chr11 105586460 105586598 -43196874 - AluY SINE Alu -167 144 1 750 82 0 33 chr11 105586599 105586721 -43196751 + MER11A LTR ERVK 1149 1266 0 834 192 49 45 chr11 105586721 105586966 -43196506 + L1MD2 LINE L1 6112 6357 -2 263 307 22 58 chr11 105587380 105587517 -43195955 + L1MEd LINE L1 460 591 -5528 1839 162 0 7 chr11 105587576 105587872 -43195600 + AluJo SINE Alu 1 294 -18 253 233 0 0 chr11 105587936 105587996 -43195476 + HAL1 LINE L1 1503 1562 -945 267 203 0 0 chr11 105588541 105588600 -43194872 + (TG)n Simple_repeat Simple_repeat 2 60 0 35 0 0 0 chr11 105588723 105588758 -43194714 + AT_rich Low_complexity Low_complexity 1 35 0 333 382 69 4 chr11 105588973 105589219 -43194253 - HAL1b LINE L1 -774 574 313 240 336 87 17 chr11 105591394 105591551 -43191921 - MIR SINE MIR -77 131 5 522 0 0 0 chr11 105591692 105591750 -43191722 + (CA)n Simple_repeat Simple_repeat 2 59 0 1038 223 164 48 chr11 105591784 105592308 -43191164 + MER34C LTR ERV1 1 585 0 2441 242 77 58 chr11 105592821 105594557 -43188915 + L1MCb LINE L1 31 1811 -4753 512 254 34 0 chr11 105594788 105594965 -43188507 - MER53 DNA DNA -3 186 4 370 331 99 51 chr11 105595175 105595468 -43188004 + L2 LINE L2 294 600 -2714 523 208 28 14 chr11 105595638 105595782 -43187690 - LTR43 LTR ERV1 -281 321 176 1350 208 169 21 chr11 105595920 105596347 -43187125 - LTR2B LTR ERV1 0 490 1 305 321 44 48 chr11 105596421 105596673 -43186799 + L2 LINE L2 560 810 -2504 400 331 178 27 chr11 105596909 105597504 -43185968 + L2 LINE L2 818 1502 -1812 1379 228 54 69 chr11 105597529 105597751 -43185721 - MLT1C LTR MaLR -1 466 242 2369 169 29 2 chr11 105597751 105598164 -43185308 + MSTB LTR MaLR 1 424 -2 1379 228 54 69 chr11 105598164 105598402 -43185070 - MLT1C LTR MaLR -225 242 13 1074 216 5 5 chr11 105598536 105598735 -43184737 + AluJo SINE Alu 7 205 -107 417 153 0 0 chr11 105598785 105598857 -43184615 + (CA)n Simple_repeat Simple_repeat 2 73 0 194 383 149 0 chr11 105599039 105599214 -43184258 + L2 LINE L2 2244 2444 -870 531 311 126 17 chr11 105599442 105600159 -43183313 + L1MCb LINE L1 2559 3353 -3211 302 186 55 110 chr11 105600243 105600388 -43183084 + L1MCb LINE L1 3536 3672 -2892 2396 70 0 7 chr11 105600427 105600725 -43182747 + AluY SINE Alu 1 296 -15 419 0 20 0 chr11 105600725 105600776 -43182696 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 14780 210 90 8 chr11 105600818 105606750 -43176722 + L1PB1 LINE L1 14 6505 -362 214 117 13 78 chr11 105606754 105606831 -43176641 + (TA)n Simple_repeat Simple_repeat 2 73 0 360 106 85 33 chr11 105606858 105607291 -43176181 + (CATAT)n Simple_repeat Simple_repeat 1 455 0 297 121 78 30 chr11 105607408 105607574 -43175898 + (CATAT)n Simple_repeat Simple_repeat 2 175 0 2359 122 5 21 chr11 105607579 105607955 -43175517 + L1PB1 LINE L1 6498 6867 0 500 224 69 0 chr11 105608136 105608252 -43175220 + FLAM_C SINE Alu 1 124 -19 1107 299 117 6 chr11 105608618 105609459 -43174013 + L1ME3A LINE L1 5087 6049 -121 25 51 0 0 chr11 105610333 105610372 -43173100 + AT_rich Low_complexity Low_complexity 1 39 0 718 345 13 4 chr11 105610765 105610994 -43172478 - MIR SINE MIR 0 262 32 34 24 0 0 chr11 105612246 105612287 -43171185 + AT_rich Low_complexity Low_complexity 1 41 0 1617 160 0 41 chr11 105612288 105612624 -43170848 + AluJb SINE Alu 1 324 0 201 208 21 0 chr11 105612877 105612925 -43170547 - MIR SINE MIR -104 158 110 228 378 74 30 chr11 105612962 105613097 -43170375 - L2 LINE L2 -17 3255 3115 22 0 0 0 chr11 105613431 105613453 -43170019 + AT_rich Low_complexity Low_complexity 1 22 0 253 244 70 12 chr11 105613771 105613857 -43169615 - MIR3 SINE MIR -13 195 105 216 0 0 0 chr11 105614083 105614107 -43169365 + (CA)n Simple_repeat Simple_repeat 2 25 0 216 0 0 0 chr11 105614868 105614892 -43168580 + (CAAGC)n Simple_repeat Simple_repeat 1 24 0 24 53 0 0 chr11 105615620 105615658 -43167814 + AT_rich Low_complexity Low_complexity 1 38 0 203 0 37 0 chr11 105615697 105615724 -43167748 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 328 287 69 55 chr11 105617611 105617813 -43165659 + L1M4 LINE L1 4936 5140 -1006 728 318 55 73 chr11 105617838 105618332 -43165140 - L2 LINE L2 -18 3295 2811 298 306 138 17 chr11 105618751 105619042 -43164430 - L1M4 LINE L1 -1319 4827 4502 27 92 0 0 chr11 105619053 105619129 -43164343 + AT_rich Low_complexity Low_complexity 1 76 0 534 318 70 49 chr11 105619140 105619628 -43163844 - L1M4 LINE L1 -1799 4347 3850 333 306 49 38 chr11 105619778 105619961 -43163511 + Charlie8 DNA MER1_type 34 218 -2199 2437 237 44 10 chr11 105620598 105621282 -43162190 - L1MB7 LINE L1 -19 6663 5957 3130 201 41 46 chr11 105621283 105622071 -43161401 - LTR1 LTR ERV1 -1 784 1 2097 127 25 9 chr11 105622071 105622393 -43161079 - HUERS-P2 LTR ERV1 0 3088 2762 5471 179 30 23 chr11 105622393 105623506 -43159966 - HUERS-P2 LTR ERV1 -1901 1187 5 3251 166 38 71 chr11 105623509 105624321 -43159151 - LTR1 LTR ERV1 0 785 1 760 233 12 113 chr11 105624322 105624816 -43158656 - L1MB7 LINE L1 -717 5959 5517 * 4714 269 63 33 chr11 105624808 105626821 -43156651 - L1MB7 LINE L1 -2097 4547 2596 288 0 0 0 chr11 105626821 105626853 -43156619 + (TG)n Simple_repeat Simple_repeat 1 32 0 4714 269 63 33 chr11 105626853 105628927 -43154545 - L1MB7 LINE L1 -4048 2596 211 3355 139 24 68 chr11 105628927 105628963 -43154509 + LTR26 LTR ERV1 1 37 -566 1556 187 25 14 chr11 105628963 105629247 -43154225 + AluJb SINE Alu 1 287 -25 3355 139 24 68 chr11 105629247 105629841 -43153631 + LTR26 LTR ERV1 37 603 0 4714 269 63 33 chr11 105629841 105630059 -43153413 - L1MB7 LINE L1 -6433 211 1 689 194 0 15 chr11 105630069 105630203 -43153269 - FLAM_A SINE Alu 0 142 11 45 75 0 0 chr11 105630259 105630353 -43153119 + AT_rich Low_complexity Low_complexity 1 94 0 313 221 42 32 chr11 105630376 105630471 -43153001 - L1MC4 LINE L1 -1333 6709 6614 311 219 0 62 chr11 105630392 105630488 -43152984 + L1MC4 LINE L1 6615 6704 -1338 * 483 139 55 18 chr11 105630488 105630653 -43152819 + (TA)n Simple_repeat Simple_repeat 1 171 0 303 281 11 11 chr11 105630690 105630779 -43152693 - L1MC4 LINE L1 -1339 6703 6615 23 78 0 0 chr11 105631074 105631125 -43152347 + AT_rich Low_complexity Low_complexity 1 51 0 1587 163 117 18 chr11 105631453 105631779 -43151693 + MSTA LTR MaLR 71 428 0 238 399 30 25 chr11 105631806 105632009 -43151463 + L2 LINE L2 2851 3054 -259 24 53 0 0 chr11 105632403 105632441 -43151031 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr11 105632572 105632594 -43150878 + AT_rich Low_complexity Low_complexity 1 22 0 236 332 82 58 chr11 105633173 105633235 -43150237 + MIR SINE MIR 48 107 -155 1555 261 68 10 chr11 105633235 105633722 -43149750 - LTR40a LTR ERVL -4 515 1 236 332 82 58 chr11 105633722 105633867 -43149605 + MIR SINE MIR 107 260 -2 180 0 0 0 chr11 105636414 105636434 -43147038 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 264 30 0 0 chr11 105636433 105636466 -43147006 + (CA)n Simple_repeat Simple_repeat 1 33 0 1177 301 124 26 chr11 105637178 105637749 -43145723 - MLT2E LTR ERVL 0 628 2 23 0 0 0 chr11 105638056 105638079 -43145393 + AT_rich Low_complexity Low_complexity 1 23 0 1274 244 159 58 chr11 105638145 105638730 -43144742 - MLT1E1 LTR MaLR -10 644 1 276 149 0 0 chr11 105638783 105638830 -43144642 + (CA)n Simple_repeat Simple_repeat 2 48 0 251 138 35 17 chr11 105638835 105638893 -43144579 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 640 326 37 11 chr11 105638904 105639177 -43144295 - HERVL LTR ERVL -418 5236 4957 2157 311 39 3 chr11 105639219 105640004 -43143468 + ERVL LTR ERVL 3121 4015 -1749 197 238 12 0 chr11 105640004 105640084 -43143388 + (TA)n Simple_repeat Simple_repeat 1 81 0 23 0 0 0 chr11 105640342 105640365 -43143107 + AT_rich Low_complexity Low_complexity 1 23 0 24 77 0 0 chr11 105640763 105640815 -43142657 + AT_rich Low_complexity Low_complexity 1 52 0 292 313 43 0 chr11 105642780 105642895 -43140577 - MIR SINE MIR -56 206 87 244 327 13 69 chr11 105644125 105644284 -43139188 + MER77 LTR ERV1 51 200 -405 * 972 246 79 99 chr11 105644264 105644857 -43138615 + MER21B LTR ERV1 133 713 -150 601 223 8 0 chr11 105645198 105645319 -43138153 - FLAM_C SINE Alu -21 122 1 180 0 0 0 chr11 105645485 105645505 -43137967 + (TTTTTA)n Simple_repeat Simple_repeat 2 21 0 11320 51 0 0 chr11 105645519 105648090 -43135382 - L1PA6 LINE L1 -7 6147 3576 276 30 0 0 chr11 105648090 105648123 -43135349 + (GGAA)n Simple_repeat Simple_repeat 1 33 0 22 35 0 0 chr11 105648126 105648155 -43135317 + AT_rich Low_complexity Low_complexity 1 29 0 345 185 26 52 chr11 105649129 105649206 -43134266 + AluS SINE Alu 2 63 -239 222 211 57 8 chr11 105649209 105649332 -43134140 + (TA)n Simple_repeat Simple_repeat 1 129 0 2080 193 34 88 chr11 105649338 105649988 -43133484 + LTR6A LTR ERV1 1 563 -1 251 271 0 0 chr11 105650650 105650698 -43132774 - MLT2B1 LTR ERVL -108 412 365 1953 130 10 3 chr11 105650707 105651007 -43132465 + AluSx SINE Alu 9 310 -2 857 209 77 26 chr11 105651046 105651280 -43132192 - MLT2B1 LTR ERVL -274 246 1 193 161 0 0 chr11 105652123 105652154 -43131318 - MIR SINE MIR -61 147 117 248 273 118 25 chr11 105652354 105652515 -43130957 + L1MEc LINE L1 1815 1990 -4406 * 6454 87 7 0 chr11 105652502 105653845 -43129627 + L1PA7 LINE L1 4770 6118 -36 799 103 9 0 chr11 105653845 105653953 -43129519 + L1PA7 LINE L1 6038 6154 0 232 273 16 80 chr11 105653953 105654140 -43129332 + L1MEc LINE L1 1963 2137 -4259 643 274 50 48 chr11 105654167 105654565 -43128907 + L1MEc LINE L1 2219 2617 -3598 601 279 60 21 chr11 105654572 105654905 -43128567 + L1MEc LINE L1 3740 4085 -2130 1306 234 16 0 chr11 105654908 105655211 -43128261 - L1MB1 LINE L1 -303 5886 5579 1248 216 16 38 chr11 105655212 105655527 -43127945 + L1MA10 LINE L1 6027 6334 0 1929 132 7 3 chr11 105655539 105655834 -43127638 + AluSp SINE Alu 1 296 -17 1673 264 84 14 chr11 105655903 105656200 -43127272 + L1MEc LINE L1 4089 4363 -1852 1946 115 25 3 chr11 105656200 105656486 -43126986 - AluY SINE Alu -19 292 1 1673 264 84 14 chr11 105656486 105657005 -43126467 + L1MEc LINE L1 4363 4963 -1252 858 200 67 0 chr11 105657006 105657171 -43126301 + FRAM SINE Alu 1 175 -1 2276 104 0 0 chr11 105657171 105657469 -43126003 + AluY SINE Alu 1 298 -13 492 0 44 0 chr11 105657469 105657537 -43125935 + (TA)n Simple_repeat Simple_repeat 2 72 0 299 302 82 17 chr11 105657558 105657790 -43125682 + L1MEc LINE L1 4996 5242 -973 3300 155 52 44 chr11 105657831 105658489 -43124983 + LTR51 LTR ERV1 9 671 0 5401 199 32 19 chr11 105658549 105659778 -43123694 + L1 LINE L1 3731 4975 -1171 2267 177 37 7 chr11 105659778 105660208 -43123264 - LTR24 LTR ERV1 0 467 25 1797 188 19 10 chr11 105660803 105661213 -43122259 - L1P LINE L1 -801 6783 6370 * 11316 209 29 17 chr11 105661187 105665419 -43118053 - L1PA12 LINE L1 -2764 4820 1 43 35 0 0 chr11 105665668 105665725 -43117747 + AT_rich Low_complexity Low_complexity 1 57 0 478 258 87 67 chr11 105666352 105666801 -43116671 - LTR37B LTR ERV1 -4 464 7 1544 186 3 48 chr11 105667560 105667871 -43115601 + AluSx SINE Alu 1 297 -15 28 48 0 0 chr11 105667986 105668028 -43115444 + AT_rich Low_complexity Low_complexity 1 42 0 390 326 8 16 chr11 105668581 105668710 -43114762 + MER58A DNA MER1_type 1 128 0 22 0 0 0 chr11 105668800 105668822 -43114650 + AT_rich Low_complexity Low_complexity 1 22 0 773 174 0 0 chr11 105670018 105670139 -43113333 + 5S rRNA rRNA 1 121 0 24 53 0 0 chr11 105670139 105670177 -43113295 + AT_rich Low_complexity Low_complexity 1 38 0 1956 172 24 19 chr11 105670305 105670678 -43112794 - THE1C LTR MaLR 0 375 1 2279 95 0 7 chr11 105670731 105671036 -43112436 + AluSp SINE Alu 1 303 -10 2808 223 43 48 chr11 105671423 105671501 -43111971 - L1MA10 LINE L1 -129 6205 6128 1350 188 44 15 chr11 105671501 105671895 -43111577 + AluJb SINE Alu 2 403 0 303 28 0 0 chr11 105671894 105671930 -43111542 + (GGGA)n Simple_repeat Simple_repeat 2 37 0 2808 223 43 48 chr11 105671895 105672153 -43111319 - L1MA10 LINE L1 -206 6128 5870 1929 161 27 21 chr11 105672153 105672526 -43110946 + THE1C LTR MaLR 1 375 0 2808 223 43 48 chr11 105672526 105673108 -43110364 - L1MA10 LINE L1 -464 5870 5324 2903 189 34 12 chr11 105673201 105673858 -43109614 - L1MA10 LINE L1 -1260 4886 4216 680 135 10 0 chr11 105673858 105673962 -43109510 + AluSx SINE Alu 27 131 -181 685 116 69 2 chr11 105673962 105674468 -43109004 + (TA)n Simple_repeat Simple_repeat 1 539 0 1168 126 0 16 chr11 105674505 105674687 -43108785 + AluSx SINE Alu 131 309 -1 752 236 17 6 chr11 105674687 105674865 -43108607 - L1MA10 LINE L1 -1922 4224 4045 594 227 0 26 chr11 105674866 105675020 -43108452 - L1MA10 LINE L1 -2176 3970 3821 565 179 116 12 chr11 105675213 105675567 -43107905 - L1MA4 LINE L1 -1 6299 5902 37 86 0 0 chr11 105675619 105675712 -43107760 + AT_rich Low_complexity Low_complexity 1 93 0 332 381 109 23 chr11 105676105 105676837 -43106635 - L2 LINE L2 -82 3231 2354 518 244 26 103 chr11 105676914 105677254 -43106218 - L1ME1 LINE L1 -14 6152 5839 198 0 0 0 chr11 105677549 105677571 -43105901 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 26 0 0 0 chr11 105678235 105678261 -43105211 + AT_rich Low_complexity Low_complexity 1 26 0 26 0 0 0 chr11 105678550 105678576 -43104896 + AT_rich Low_complexity Low_complexity 1 26 0 664 263 143 49 chr11 105679029 105679455 -43104017 + LTR50 LTR ERVL 1 466 -329 2151 194 32 28 chr11 105679461 105680063 -43103409 + pTR5 LTR ERV1 741 1344 -1094 4697 113 91 21 chr11 105680082 105680851 -43102621 + LTR12 LTR ERV1 4 826 0 326 284 45 0 chr11 105680922 105681010 -43102462 + LTR50 LTR ERVL 584 675 -120 26 0 0 0 chr11 105681708 105681734 -43101738 + AT_rich Low_complexity Low_complexity 1 26 0 397 244 63 31 chr11 105681891 105682190 -43101282 + L1ME3A LINE L1 5577 5962 -208 1993 144 0 0 chr11 105682269 105682561 -43100911 - AluSx SINE Alu -16 296 5 21 36 0 0 chr11 105682614 105682642 -43100830 + AT_rich Low_complexity Low_complexity 1 28 0 198 103 0 0 chr11 105682701 105682730 -43100742 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 709 248 111 61 chr11 105682730 105683529 -43099943 - L1ME2 LINE L1 -9 6155 5119 555 90 0 0 chr11 105683589 105683667 -43099805 + (TA)n Simple_repeat Simple_repeat 1 78 0 2421 65 0 3 chr11 105683783 105684093 -43099379 - AluY SINE Alu -2 309 1 432 313 134 0 chr11 105684186 105684387 -43099085 - MIR SINE MIR -26 236 9 369 62 0 0 chr11 105685691 105685739 -43097733 + (CA)n Simple_repeat Simple_repeat 1 48 0 25 31 0 0 chr11 105687093 105687125 -43096347 + AT_rich Low_complexity Low_complexity 1 32 0 2131 105 7 0 chr11 105687283 105687578 -43095894 + AluSq SINE Alu 1 297 -16 36 23 0 0 chr11 105688132 105688175 -43095297 + AT_rich Low_complexity Low_complexity 1 43 0 293 167 0 0 chr11 105688183 105688231 -43095241 - MLT1A1 LTR MaLR -2 455 408 487 79 0 0 chr11 105688233 105688309 -43095163 - AluSp/q SINE Alu -6 307 232 869 227 149 51 chr11 105688311 105688606 -43094866 - MLT1A1 LTR MaLR -41 324 1 21 0 0 0 chr11 105688985 105689006 -43094466 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr11 105689646 105689668 -43093804 + AT_rich Low_complexity Low_complexity 1 22 0 13160 181 30 45 chr11 105689994 105693927 -43089545 - L1MA2 LINE L1 -3 7720 3727 2233 110 3 0 chr11 105693927 105694228 -43089244 - AluSg SINE Alu -3 307 6 13160 181 30 45 chr11 105694228 105694405 -43089067 - L1MA2 LINE L1 -3996 3727 3549 204 40 0 0 chr11 105694405 105694430 -43089042 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 13160 181 30 45 chr11 105694430 105697793 -43085679 - L1MA2 LINE L1 -4174 3549 18 26 50 0 0 chr11 105697963 105698003 -43085469 + AT_rich Low_complexity Low_complexity 1 40 0 21 71 0 0 chr11 105698271 105698313 -43085159 + AT_rich Low_complexity Low_complexity 1 42 0 1778 181 52 35 chr11 105698396 105698821 -43084651 + MSTB1 LTR MaLR 1 432 0 249 352 124 39 chr11 105699127 105699360 -43084112 - MIR SINE MIR -2 260 8 2295 88 0 28 chr11 105701004 105701324 -43082148 - AluY SINE Alu 0 311 1 310 341 133 6 chr11 105701671 105701844 -43081628 - MIR SINE MIR -19 243 49 22 35 0 0 chr11 105702862 105702891 -43080581 + AT_rich Low_complexity Low_complexity 1 29 0 31 0 0 0 chr11 105703372 105703403 -43080069 + AT_rich Low_complexity Low_complexity 1 31 0 27 62 0 0 chr11 105703441 105703489 -43079983 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr11 105703678 105703699 -43079773 + AT_rich Low_complexity Low_complexity 1 21 0 350 241 51 63 chr11 105704352 105704510 -43078962 + MER65B LTR ERV1 365 520 -11 227 81 32 48 chr11 105704799 105704861 -43078611 + (TTA)n Simple_repeat Simple_repeat 2 62 0 21 57 0 0 chr11 105705371 105705406 -43078066 + AT_rich Low_complexity Low_complexity 1 35 0 5101 67 0 1 chr11 105705504 105706157 -43077315 - L1PA7 LINE L1 -25 6129 5478 7495 76 43 3 chr11 105706158 105707293 -43076179 + L1P LINE L1 4233 5421 -733 29 60 0 0 chr11 105707330 105707380 -43076092 + AT_rich Low_complexity Low_complexity 1 50 0 2310 124 94 8 chr11 105707481 105707875 -43075597 + MSTA LTR MaLR 1 428 0 27 49 0 0 chr11 105708391 105708432 -43075040 + AT_rich Low_complexity Low_complexity 1 41 0 1437 311 152 17 chr11 105708631 105709505 -43073967 + L2 LINE L2 1547 2538 -776 317 160 0 0 chr11 105709522 105709572 -43073900 - AluSp/q SINE Alu -83 220 171 747 334 87 23 chr11 105709678 105710081 -43073391 + L2 LINE L2 2794 3223 -90 269 102 41 0 chr11 105710092 105710141 -43073331 + CT-rich Low_complexity Low_complexity 4 54 0 1914 143 0 4 chr11 105710162 105710442 -43073030 - AluSx SINE Alu -32 280 2 27 29 0 0 chr11 105711500 105711534 -43071938 + AT_rich Low_complexity Low_complexity 1 34 0 370 275 45 67 chr11 105713522 105713700 -43069772 + HAL1 LINE L1 1108 1281 -1226 23 0 0 0 chr11 105713704 105713727 -43069745 + AT_rich Low_complexity Low_complexity 1 23 0 209 33 33 0 chr11 105713868 105713898 -43069574 + (CTATA)n Simple_repeat Simple_repeat 5 35 0 802 267 20 11 chr11 105714291 105714711 -43068761 + MLT1C LTR MaLR 1 461 -6 1581 220 68 8 chr11 105715794 105716176 -43067296 + MER31B LTR ERV1 1 405 -61 382 318 35 12 chr11 105716588 105716761 -43066711 + LTR40b LTR ERVL 188 364 -98 232 187 13 13 chr11 105716788 105716863 -43066609 + (TA)n Simple_repeat Simple_repeat 1 75 0 192 40 0 0 chr11 105716865 105716890 -43066582 + (CA)n Simple_repeat Simple_repeat 2 26 0 759 219 73 4 chr11 105717017 105717263 -43066209 + L1MC4 LINE L1 7720 7982 -60 509 205 145 0 chr11 105717263 105717380 -43066092 - MER110 LTR ERV1 -11 480 347 524 215 101 0 chr11 105717469 105717618 -43065854 - MER110 LTR ERV1 -282 209 46 21 0 0 0 chr11 105717656 105717677 -43065795 + AT_rich Low_complexity Low_complexity 1 21 0 4063 95 33 0 chr11 105718018 105718672 -43064800 + L1MC/D LINE L1 4821 5499 -743 21 0 0 0 chr11 105719002 105719023 -43064449 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr11 105719105 105719126 -43064346 + (TC)n Simple_repeat Simple_repeat 2 22 0 189 171 0 0 chr11 105719126 105719161 -43064311 + (TA)n Simple_repeat Simple_repeat 2 36 0 665 254 132 0 chr11 105719907 105720112 -43063360 + MIR SINE MIR 17 248 -14 23 54 0 0 chr11 105720703 105720740 -43062732 + AT_rich Low_complexity Low_complexity 1 37 0 25 51 0 0 chr11 105721124 105721163 -43062309 + AT_rich Low_complexity Low_complexity 1 39 0 254 231 34 0 chr11 105722074 105722160 -43061312 - MIR SINE MIR -63 145 100 903 253 119 7 chr11 105722236 105722521 -43060951 - MER110 LTR ERV1 -5 486 170 293 195 35 46 chr11 105722974 105723061 -43060411 - MER110-int LTR ERV1 -253 4394 4309 2701 77 44 8 chr11 105723154 105723776 -43059696 - L1PA10 LINE L1 -471 5660 5019 3198 107 8 6 chr11 105723776 105724253 -43059219 + L1PA10 LINE L1 5689 6166 -2 378 282 20 59 chr11 105724267 105724469 -43059003 - MER110-int LTR ERV1 -448 4199 4006 465 301 68 76 chr11 105724843 105725077 -43058395 - MER110-int LTR ERV1 -3980 667 437 1371 190 69 24 chr11 105725077 105725367 -43058105 - AluJb SINE Alu -9 303 1 465 301 68 76 chr11 105725367 105725590 -43057882 - MER110-int LTR ERV1 -4210 437 214 284 331 84 11 chr11 105725889 105726067 -43057405 - MER89-int LTR ERV1 -4493 2308 2118 226 278 28 0 chr11 105726232 105726304 -43057168 - L1ME LINE L1 -668 5494 5421 258 321 118 35 chr11 105726576 105727282 -43056190 + L1ME3A LINE L1 3712 4475 -1671 921 228 62 62 chr11 105727846 105728118 -43055354 - MLT1A1 LTR MaLR -93 272 1 1775 92 4 13 chr11 105729460 105729698 -43053774 + AluSq SINE Alu 1 236 -77 4607 109 19 16 chr11 105729700 105730386 -43053086 - LTR12 LTR ERV1 0 688 1 517 184 61 57 chr11 105730572 105730784 -43052688 - pTR5 LTR ERV1 -1410 1028 816 397 151 31 39 chr11 105730786 105730906 -43052566 + Alu SINE Alu 239 295 -7 546 183 87 0 chr11 105730906 105731021 -43052451 - L1MB2 LINE L1 -10 6161 6037 385 272 172 36 chr11 105731194 105731473 -43051999 + L1ME3A LINE L1 5538 5854 -316 1652 253 34 20 chr11 105731701 105732294 -43051178 + L1MB7 LINE L1 2276 2876 -3270 * 3440 220 25 13 chr11 105732286 105733266 -43050206 + L1MB7 LINE L1 5175 6172 -12 417 248 39 26 chr11 105733307 105733460 -43050012 - Charlie2 DNA MER1_type -2388 474 320 8856 183 12 5 chr11 105733616 105735797 -43047675 + L1PB1 LINE L1 1 1644 -5219 13720 201 25 18 chr11 105735798 105737079 -43046393 + L1PB1 LINE L1 1779 3050 -3817 565 113 0 0 chr11 105737079 105737159 -43046313 + MADE1 DNA Mariner 1 80 0 13720 201 25 18 chr11 105737159 105738651 -43044821 + L1PB1 LINE L1 3050 4530 -2337 1971 141 10 0 chr11 105738651 105738949 -43044523 + AluY SINE Alu 1 301 -10 13720 201 25 18 chr11 105738949 105741174 -43042298 + L1PB1 LINE L1 4530 6861 -6 1338 97 57 26 chr11 105741680 105741907 -43041565 - L1PA11 LINE L1 0 6174 5941 2940 133 25 14 chr11 105741915 105742631 -43040841 - L1PA11 LINE L1 -565 5603 4877 4904 194 51 10 chr11 105742714 105743785 -43039687 + L1MC1 LINE L1 5214 6327 -6 287 122 37 49 chr11 105743982 105744064 -43039408 + T-rich Low_complexity Low_complexity 3 83 0 442 252 54 37 chr11 105744763 105745005 -43038467 - L1MC5 LINE L1 -99 7862 7617 384 240 63 102 chr11 105745128 105745297 -43038175 - L1MC4 LINE L1 0 8042 7891 297 0 0 0 chr11 105745297 105745330 -43038142 + (TG)n Simple_repeat Simple_repeat 2 34 0 384 240 63 102 chr11 105745330 105745493 -43037979 - L1MC4 LINE L1 -151 7891 7723 21 57 0 0 chr11 105745497 105745532 -43037940 + AT_rich Low_complexity Low_complexity 1 35 0 580 263 93 82 chr11 105745608 105746159 -43037313 - L1MC5 LINE L1 -852 7109 6542 204 153 0 108 chr11 105746747 105746858 -43036614 + (TA)n Simple_repeat Simple_repeat 1 99 0 244 240 13 0 chr11 105746873 105746948 -43036524 + (TA)n Simple_repeat Simple_repeat 1 76 0 476 239 14 42 chr11 105747914 105748056 -43035416 + MER3 DNA MER1_type 1 138 -71 * 5637 198 37 13 chr11 105748032 105750292 -43033180 + L1PA15 LINE L1 3865 6165 0 6056 236 110 16 chr11 105751225 105755821 -43027651 - L1 LINE L1 -2167 4939 192 1836 160 41 36 chr11 105755821 105756183 -43027289 + THE1B LTR MaLR 1 364 0 6056 236 110 16 chr11 105756183 105756228 -43027244 - L1 LINE L1 -6914 192 153 374 322 25 0 chr11 105756314 105756432 -43027040 + L2 LINE L2 2737 2857 -457 1090 250 107 30 chr11 105758432 105758796 -43024676 - MER76 LTR ERV -296 392 1 220 283 97 48 chr11 105759184 105759329 -43024143 + MIR SINE MIR 111 262 0 5265 133 42 6 chr11 105759739 105760658 -43022814 + L1PA15 LINE L1 5200 6149 -16 2013 167 0 0 chr11 105760870 105761182 -43022290 + AluSx SINE Alu 1 312 0 1550 176 79 0 chr11 105761470 105761748 -43021724 + AluJb SINE Alu 6 305 -7 1741 156 3 7 chr11 105762681 105762989 -43020483 + AluJb SINE Alu 1 307 0 324 303 109 10 chr11 105763270 105763686 -43019786 - L1M4 LINE L1 -4565 2079 1639 237 108 0 0 chr11 105763787 105763824 -43019648 + (TCC)n Simple_repeat Simple_repeat 3 39 0 535 317 22 11 chr11 105763930 105764113 -43019359 - MER101 LTR ERV1 -57 417 233 269 337 22 0 chr11 105764096 105764188 -43019284 - MER101B LTR ERV1 -267 303 210 * 437 240 85 19 chr11 105764350 105764564 -43018908 - L1M4 LINE L1 -5041 1501 1298 37 52 0 0 chr11 105764588 105764646 -43018826 + AT_rich Low_complexity Low_complexity 1 58 0 10987 206 44 5 chr11 105764864 105767037 -43016435 + L1MA2 LINE L1 15 2271 -5294 * 14006 171 31 11 chr11 105767031 105769211 -43014261 + L1MA2 LINE L1 2956 5091 -2632 2206 123 0 0 chr11 105769211 105769520 -43013952 + AluSg SINE Alu 1 309 -1 14006 171 31 11 chr11 105769520 105772007 -43011465 + L1MA2 LINE L1 5091 7722 -1 506 236 188 0 chr11 105772028 105772172 -43011300 + MER77 LTR ERV1 215 385 -220 320 324 80 40 chr11 105772220 105772519 -43010953 + HERVL LTR ERVL 1394 1704 -4060 2362 63 0 13 chr11 105772721 105773022 -43010450 - AluY SINE Alu -14 297 1 2025 218 108 9 chr11 105773319 105774336 -43009136 + L1MB4 LINE L1 1749 2968 -3414 2370 191 25 21 chr11 105774340 105774901 -43008571 + L1MB4 LINE L1 5852 6414 -2 547 335 50 18 chr11 105774932 105775269 -43008203 + HERVL LTR ERVL 2940 3287 -2367 707 312 65 21 chr11 105775973 105776313 -43007159 + HERVL LTR ERVL 3324 3678 -2086 1057 320 47 23 chr11 105776427 105776984 -43006488 + HERVL LTR ERVL 4071 4640 -1124 282 308 112 39 chr11 105777083 105777332 -43006140 + HERVL LTR ERVL 4777 5057 -707 2067 133 6 51 chr11 105777332 105777685 -43005787 + MER1B DNA MER1_type 1 337 0 282 308 112 39 chr11 105777685 105777766 -43005706 + HERVL LTR ERVL 5057 5131 -633 2225 119 0 0 chr11 105777925 105778219 -43005253 - AluSx SINE Alu -18 294 1 1051 233 37 35 chr11 105779406 105779854 -43003618 - MER74A LTR ERVL -30 528 3 184 310 54 70 chr11 105781109 105781238 -43002234 + L2 LINE L2 3141 3267 -5 197 349 23 83 chr11 105782164 105782225 -43001247 - MIR SINE MIR -58 150 100 2006 152 51 28 chr11 105782225 105782581 -43000891 + THE1B LTR MaLR 1 364 0 197 349 23 83 chr11 105782581 105782651 -43000821 - MIR SINE MIR -108 100 27 331 359 39 0 chr11 105782879 105782982 -43000490 - L2 LINE L2 0 3313 3207 436 229 69 104 chr11 105783165 105783248 -43000224 - MER45A DNA AcHobo -1406 175 98 627 198 8 0 chr11 105783248 105783369 -43000103 + FLAM_A SINE Alu 2 123 -10 436 229 69 104 chr11 105783369 105783429 -43000043 - MER45A DNA AcHobo -1483 98 37 438 350 72 4 chr11 105783447 105783684 -42999788 - L2 LINE L2 -449 2865 2613 1251 252 31 18 chr11 105783888 105784273 -42999199 + MER63C DNA MER1_type 1 390 -540 1819 106 88 4 chr11 105784415 105784688 -42998784 + AluSq SINE Alu 5 300 -13 281 286 60 34 chr11 105784712 105784830 -42998642 + MIR SINE MIR 5 139 -69 5979 178 16 3 chr11 105784841 105785994 -42997478 - L1P LINE L1 -1459 4687 3521 387 0 0 0 chr11 105786003 105786046 -42997426 + (T)n Simple_repeat Simple_repeat 1 43 0 219 245 0 0 chr11 105786729 105786782 -42996690 + (CATATA)n Simple_repeat Simple_repeat 6 58 0 225 0 0 0 chr11 105786793 105786818 -42996654 + (TA)n Simple_repeat Simple_repeat 2 26 0 236 181 111 28 chr11 105786892 105786964 -42996508 + L1MC5 LINE L1 7836 7913 -48 21 0 0 0 chr11 105786966 105786987 -42996485 + AT_rich Low_complexity Low_complexity 1 21 0 202 275 117 42 chr11 105787929 105788049 -42995423 + MIR SINE MIR 12 140 -122 329 289 48 0 chr11 105788877 105788960 -42994512 + L1MC4 LINE L1 6616 6702 -1340 21 0 0 0 chr11 105789698 105789719 -42993753 + AT_rich Low_complexity Low_complexity 1 21 0 21684 174 29 24 chr11 105789719 105793565 -42989907 + L1PA11 LINE L1 1191 5874 -1738 2110 116 6 28 chr11 105793565 105793885 -42989587 + AluSq SINE Alu 1 313 0 21684 174 29 24 chr11 105793885 105795631 -42987841 + L1PA11 LINE L1 5874 7610 -2 1122 166 104 4 chr11 105795638 105795879 -42987593 - L1MA9 LINE L1 -35 6277 6013 2355 93 17 0 chr11 105795942 105796287 -42987185 - L1PB1 LINE L1 0 6151 5801 3712 274 88 62 chr11 105796324 105796759 -42986713 - L1M4c LINE L1 -4616 2343 1921 1496 206 14 3 chr11 105796759 105797041 -42986431 - AluJb SINE Alu -23 289 5 3712 274 88 62 chr11 105797041 105797328 -42986144 - L1M4c LINE L1 -5038 1921 1643 2053 129 0 26 chr11 105797328 105797639 -42985833 - AluSx SINE Alu -9 303 1 3712 274 88 62 chr11 105797639 105799181 -42984291 - L1M4c LINE L1 -5316 1643 4 4689 56 3 2 chr11 105799407 105799997 -42983475 - L1PA6 LINE L1 0 6154 5564 2000 121 20 17 chr11 105800263 105800560 -42982912 - AluSx SINE Alu -14 298 1 310 280 132 37 chr11 105800601 105800844 -42982628 - L1MC4a LINE L1 -1869 5939 5674 239 276 0 9 chr11 105800845 105800961 -42982511 + CT-rich Low_complexity Low_complexity 3 117 0 2183 165 39 29 chr11 105801053 105801601 -42981871 + LTR10E LTR ERV1 1 613 -5 703 141 7 78 chr11 105801685 105801827 -42981645 - AluJo SINE Alu -176 136 5 8296 103 83 98 chr11 105802308 105804031 -42979441 - pTR5 LTR ERV1 0 2438 741 270 356 7 34 chr11 105805560 105805709 -42977763 + MIR SINE MIR 15 159 -103 318 320 79 66 chr11 105807422 105807803 -42975669 - MLT1J LTR MaLR -53 458 73 5187 204 26 37 chr11 105809277 105810323 -42973149 - MER52A LTR ERV1 -1 1754 721 638 275 40 89 chr11 105810427 105810501 -42972971 - L1MCc LINE L1 -4887 1536 1460 1593 153 36 0 chr11 105810501 105810749 -42972723 - AluJb SINE Alu -50 262 6 638 275 40 89 chr11 105810749 105811122 -42972350 - L1MCc LINE L1 -4963 1460 1111 241 314 19 44 chr11 105811408 105811567 -42971905 - L1MCc LINE L1 -6249 174 20 298 56 0 0 chr11 105811850 105811886 -42971586 + AluSp/q SINE Alu 215 250 -53 743 204 90 47 chr11 105811886 105812097 -42971375 + AluJo SINE Alu 85 304 -8 379 227 62 10 chr11 105812099 105812196 -42971276 + L1MC1 LINE L1 5965 6066 -267 3836 111 111 20 chr11 105812199 105812893 -42970579 + Tigger3b DNA MER2_type 1 757 -474 2435 186 271 25 chr11 105812995 105813593 -42969879 - MER52A LTR ERV1 -1010 745 1 21 57 0 0 chr11 105813671 105813706 -42969766 + AT_rich Low_complexity Low_complexity 1 35 0 186 191 0 0 chr11 105814130 105814172 -42969300 + (TG)n Simple_repeat Simple_repeat 1 42 0 7033 112 8 32 chr11 105814333 105815516 -42967956 - L1P3 LINE L1 -4602 1859 706 669 229 7 0 chr11 105815516 105815656 -42967816 + MER77 LTR ERV1 465 605 0 559 258 72 25 chr11 105815759 105816038 -42967434 - L1MC3 LINE L1 0 7785 7494 1731 179 3 16 chr11 105816407 105816719 -42966753 - AluSx SINE Alu -4 308 1 1942 210 38 76 chr11 105816951 105817527 -42965945 - MLT2B3 LTR ERVL 0 554 1 2365 8 0 4 chr11 105818671 105818932 -42964540 - AluYb8 SINE Alu -58 260 1 1200 260 64 69 chr11 105818991 105819462 -42964010 + HERVL40 LTR ERVL 1727 4376 -1027 2106 136 0 0 chr11 105819893 105820188 -42963284 + AluSq SINE Alu 1 295 -18 23 54 0 0 chr11 105821605 105821642 -42961830 + AT_rich Low_complexity Low_complexity 1 37 0 2209 234 34 39 chr11 105822743 105823351 -42960121 - L1M2 LINE L1 -4248 3318 2436 2344 57 3 7 chr11 105823351 105823650 -42959822 - AluY SINE Alu -13 298 1 2209 234 34 39 chr11 105823650 105823881 -42959591 - L1M2 LINE L1 -5130 2436 2205 4229 97 2 0 chr11 105823988 105824547 -42958925 + HERVL-A1 LTR ERVL 1717 2276 -3378 709 145 8 0 chr11 105824544 105824661 -42958811 + HERVL-A1 LTR ERVL 5537 5654 0 * 3176 83 9 22 chr11 105824663 105825111 -42958361 + MLT2A1 LTR ERVL 3 444 0 4735 173 42 9 chr11 105825164 105826307 -42957165 + L1MA4 LINE L1 5111 6294 -6 1102 208 30 71 chr11 105826374 105826710 -42956762 - MLT1B LTR MaLR 0 390 69 26636 90 7 3 chr11 105826824 105830587 -42952885 - L1P LINE L1 -766 5380 1602 6294 118 20 29 chr11 105830587 105831611 -42951861 + MER11C LTR ERVK 1 1015 -56 388 293 55 12 chr11 105832057 105832221 -42951251 + MLT1J1 LTR MaLR 1 171 -275 2070 279 54 54 chr11 105832427 105833771 -42949701 + L1MEc LINE L1 470 1813 -4583 485 263 31 12 chr11 105833831 105833991 -42949481 + L1MEc LINE L1 551 713 -5683 639 288 18 5 chr11 105834028 105834247 -42949225 + L1MEc LINE L1 1853 2074 -4322 37 0 0 0 chr11 105834465 105834502 -42948970 + AT_rich Low_complexity Low_complexity 1 37 0 182 293 98 0 chr11 105834841 105834923 -42948549 + L3 LINE CR1 1354 1443 -134 23 0 0 0 chr11 105835356 105835379 -42948093 + AT_rich Low_complexity Low_complexity 1 23 0 382 311 73 6 chr11 105835919 105836083 -42947389 + MIR SINE MIR 88 262 0 505 281 107 41 chr11 105836514 105836710 -42946762 - MER63A DNA MER1_type -1 209 1 1182 220 11 64 chr11 105838310 105838532 -42944940 + MER2 DNA MER2_type 2 199 -145 1815 176 0 10 chr11 105838532 105838845 -42944627 - AluSx SINE Alu -2 310 1 1182 220 11 64 chr11 105838845 105838981 -42944491 + MER2 DNA MER2_type 199 341 -3 1316 163 86 5 chr11 105839005 105839226 -42944246 + AluJb SINE Alu 1 239 -73 22 35 0 0 chr11 105839654 105839683 -42943789 + AT_rich Low_complexity Low_complexity 1 29 0 787 279 123 21 chr11 105839997 105840337 -42943135 + LTR16A LTR ERVL 76 450 0 526 255 14 43 chr11 105840571 105840779 -42942693 - L1M4 LINE L1 -1449 4697 4496 381 219 57 19 chr11 105840790 105840895 -42942577 - MER34 LTR ERV1 0 542 434 802 255 47 102 chr11 105840996 105841554 -42941918 - L1M4 LINE L1 -2529 3617 3103 989 173 6 6 chr11 105841554 105841716 -42941756 - FRAM SINE Alu -4 162 1 802 255 47 102 chr11 105841716 105841855 -42941617 - L1M4 LINE L1 -3043 3103 2958 182 245 0 20 chr11 105842131 105842180 -42941292 - MER5B DNA MER1_type -113 65 18 2100 196 26 19 chr11 105842278 105842707 -42940765 - MSTB1 LTR MaLR 0 432 1 213 94 0 0 chr11 105842836 105842868 -42940604 + (TA)n Simple_repeat Simple_repeat 1 32 0 28 48 0 0 chr11 105845197 105845239 -42938233 + AT_rich Low_complexity Low_complexity 1 42 0 342 325 18 0 chr11 105895964 105896078 -42887394 - MLT1J LTR MaLR -325 186 71 596 88 0 0 chr11 105896095 105896175 -42887297 + MADE1 DNA Mariner 1 80 0 330 87 0 0 chr11 105896228 105896274 -42887198 + (TG)n Simple_repeat Simple_repeat 2 47 0 708 228 52 21 chr11 105896282 105896515 -42886957 + L1ME2 LINE L1 5731 5970 -194 926 252 93 42 chr11 105896596 105896939 -42886533 - L1MEc LINE L1 -2875 3340 3016 2447 61 0 10 chr11 105896939 105897251 -42886221 - AluY SINE Alu -2 309 1 926 252 93 42 chr11 105897251 105897566 -42885906 - L1MEc LINE L1 -3199 3016 2649 474 281 116 26 chr11 105897584 105897965 -42885507 - L1MEc LINE L1 -4081 2315 1901 314 206 11 54 chr11 105897966 105898058 -42885414 + L1MC4 LINE L1 6615 6702 -1340 399 66 0 66 chr11 105898059 105898150 -42885322 + (TA)n Simple_repeat Simple_repeat 2 86 0 321 213 11 43 chr11 105898151 105898245 -42885227 + L1MC4 LINE L1 6612 6702 -1340 303 275 25 50 chr11 105898244 105898364 -42885108 - L1MC4 LINE L1 -1338 6704 6588 * 348 241 71 105 chr11 105898373 105898668 -42884804 - L1MEc LINE L1 -4559 1837 1553 205 203 14 40 chr11 105898832 105898906 -42884566 + (TTTAA)n Simple_repeat Simple_repeat 1 72 0 226 339 0 0 chr11 105899555 105899611 -42883861 - L2 LINE L2 -205 3067 3012 26 0 0 0 chr11 105901315 105901341 -42882131 + AT_rich Low_complexity Low_complexity 1 26 0 263 372 77 10 chr11 105901379 105901586 -42881886 + MIR SINE MIR 5 225 -37 667 202 0 0 chr11 105903428 105903557 -42879915 - L1PA13 LINE L1 -13 6150 6022 527 253 13 13 chr11 105903611 105903761 -42879711 + MIR SINE MIR 86 235 -27 318 350 48 5 chr11 105904564 105904750 -42878722 + L1ME LINE L1 5499 5692 -429 1549 190 16 13 chr11 105904805 105905110 -42878362 + AluJb SINE Alu 3 308 -4 23 68 0 0 chr11 105905129 105905173 -42878299 + AT_rich Low_complexity Low_complexity 1 44 0 10385 70 2 76 chr11 105906005 105907745 -42875727 + L1P LINE L1 1 1610 -4536 * 17524 41 5 1 chr11 105907730 105909931 -42873541 + L1P LINE L1 3086 5294 -852 22 70 0 0 chr11 105910108 105910151 -42873321 + AT_rich Low_complexity Low_complexity 1 43 0 185 0 40 0 chr11 105910232 105910257 -42873215 + (TA)n Simple_repeat Simple_repeat 1 26 0 194 192 19 0 chr11 105910756 105910808 -42872664 + (TAAA)n Simple_repeat Simple_repeat 2 54 0 1726 133 67 7 chr11 105912528 105912813 -42870659 + AluSx SINE Alu 1 302 -10 1952 143 6 13 chr11 105913096 105913410 -42870062 - AluSx SINE Alu 0 312 1 375 365 22 0 chr11 105913933 105914070 -42869402 - MIR SINE MIR -21 241 102 256 271 47 0 chr11 105914743 105914828 -42868644 + GA-rich Low_complexity Low_complexity 3 91 0 2518 114 13 2 chr11 105915094 105915487 -42867985 + L1PA13 LINE L1 5764 6160 -3 7796 156 37 21 chr11 105915498 105916890 -42866582 - Tigger2 DNA MER2_type -225 2493 1080 1405 228 32 30 chr11 105917050 105917423 -42866049 + MLT1A2 LTR MaLR 1 374 0 299 336 134 0 chr11 105917444 105917676 -42865796 + LTR33A LTR ERVL 203 465 -58 371 201 6 156 chr11 105917720 105917899 -42865573 - L1MCa LINE L1 -4765 2176 2025 436 292 36 24 chr11 105917899 105918067 -42865405 - L1MCa LINE L1 -5135 1288 1119 222 62 0 0 chr11 105918329 105918361 -42865111 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 2311 96 0 0 chr11 105920365 105920667 -42862805 + AluSc SINE Alu 1 302 -7 315 150 0 0 chr11 105920780 105920840 -42862632 + (T)n Simple_repeat Simple_repeat 1 60 0 196 314 69 39 chr11 105920895 105920997 -42862475 + MIR SINE MIR 53 157 -105 24 53 0 0 chr11 105921379 105921417 -42862055 + AT_rich Low_complexity Low_complexity 1 38 0 1830 291 121 37 chr11 105921640 105922575 -42860897 + L1MCc LINE L1 312 1356 -5067 183 100 0 0 chr11 105922575 105922605 -42860867 + (CA)n Simple_repeat Simple_repeat 1 30 0 1830 291 121 37 chr11 105922605 105922781 -42860691 + L1MCc LINE L1 1356 1516 -4907 1874 161 0 10 chr11 105924789 105925093 -42858379 - AluJb SINE Alu -9 303 3 271 289 25 33 chr11 105925417 105925538 -42857934 - L1ME2 LINE L1 -3 6159 6040 219 178 0 22 chr11 105926402 105926447 -42857025 + A-rich Low_complexity Low_complexity 2 45 0 203 340 143 14 chr11 105926566 105926713 -42856759 + MIR3 SINE MIR 35 200 -8 203 381 79 29 chr11 105928260 105928399 -42855073 - L3 LINE CR1 -22 1555 1410 949 294 81 100 chr11 105928736 105929005 -42854467 + L2 LINE L2 2182 2454 -859 1986 123 10 10 chr11 105929005 105929298 -42854174 - AluSx SINE Alu -17 295 3 949 294 81 100 chr11 105929298 105930183 -42853289 + L2 LINE L2 2454 3308 -5 3729 196 25 55 chr11 105930275 105931038 -42852434 - L1MB8 LINE L1 -3 6175 5445 1887 168 3 0 chr11 105931038 105931336 -42852136 - AluSx SINE Alu -13 299 1 3729 196 25 55 chr11 105931336 105931512 -42851960 - L1MB8 LINE L1 -733 5445 5265 1162 223 64 14 chr11 105931528 105931887 -42851585 - L1MB8 LINE L1 -917 5229 4853 2509 59 0 0 chr11 105931896 105932200 -42851272 + AluY SINE Alu 1 304 -7 973 309 85 36 chr11 105932313 105933305 -42850167 - L1MEc LINE L1 -5064 1332 293 6365 46 0 0 chr11 105933483 105934309 -42849163 + L1PA4 LINE L1 5372 6197 0 1477 283 109 98 chr11 105934316 105935632 -42847840 + HAL1 LINE L1 5 1484 -1023 413 312 24 0 chr11 105935632 105935757 -42847715 + MER94 DNA DNA 1 128 -6 1477 283 109 98 chr11 105935757 105936745 -42846727 + HAL1 LINE L1 1484 2460 -47 195 64 43 43 chr11 105938792 105938839 -42844633 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 446 264 8 0 chr11 105939725 105939846 -42843626 + L1MC4 LINE L1 5769 5890 -1918 * 3631 202 67 5 chr11 105939840 105940621 -42842851 + L1MC1 LINE L1 5505 6333 0 1027 261 96 95 chr11 105940663 105941568 -42841904 + L1MC4 LINE L1 5958 6948 -945 227 294 181 44 chr11 105942132 105942292 -42841180 - MER5A DNA MER1_type 0 189 8 1938 192 18 8 chr11 105942767 105943153 -42840319 + MLT1B LTR MaLR 1 390 0 351 0 0 0 chr11 105943165 105943204 -42840268 + (CA)n Simple_repeat Simple_repeat 2 40 0 212 0 0 35 chr11 105943246 105943275 -42840197 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 387 333 113 5 chr11 105943424 105943628 -42839844 + MIR SINE MIR 11 236 -26 3549 255 61 58 chr11 105947794 105948831 -42834641 - MER45B DNA AcHobo 0 1040 1 242 280 10 40 chr11 105949055 105949155 -42834317 - MLT1K LTR MaLR 0 588 492 191 111 0 28 chr11 105949349 105949385 -42834087 + (TTA)n Simple_repeat Simple_repeat 1 35 0 422 273 91 8 chr11 105950421 105950553 -42832919 + MER58B DNA MER1_type 180 322 -19 228 330 113 48 chr11 105951560 105951896 -42831576 + L2 LINE L2 2181 2538 -776 202 339 17 0 chr11 105952113 105952172 -42831300 + L2 LINE L2 3196 3255 -17 253 233 0 0 chr11 105952243 105952303 -42831169 + A-rich Low_complexity Low_complexity 1 60 0 221 294 28 18 chr11 105952441 105952550 -42830922 + GA-rich Low_complexity Low_complexity 4 113 0 708 310 67 25 chr11 105952712 105953161 -42830311 - L1MEc LINE L1 -4329 2067 1600 347 313 90 40 chr11 105953162 105953406 -42830066 - L1MEc LINE L1 -4850 1546 1285 3082 164 68 2 chr11 105953406 105953997 -42829475 - L1MC1 LINE L1 -6 6607 5978 347 313 90 40 chr11 105953997 105954030 -42829442 - L1MEc LINE L1 -5111 1285 1255 2495 59 0 3 chr11 105954158 105954464 -42829008 - AluY SINE Alu -4 307 3 1019 218 39 0 chr11 105954476 105954710 -42828762 - L1MC1 LINE L1 -646 5967 5725 462 210 0 0 chr11 105954756 105954856 -42828616 - L1MC1 LINE L1 -4582 1844 1745 448 231 23 15 chr11 105955058 105955188 -42828284 - Zaphod DNA AcHobo -159 3872 3742 37 23 0 0 chr11 105955205 105955249 -42828223 + AT_rich Low_complexity Low_complexity 1 44 0 1260 213 79 22 chr11 105955412 105955778 -42827694 - L1MC1 LINE L1 -4772 1654 1268 1277 181 51 7 chr11 105955787 105956063 -42827409 - L1MC1 LINE L1 -6121 305 18 2500 57 0 0 chr11 105956214 105956512 -42826960 - AluY SINE Alu -13 298 1 1911 243 72 95 chr11 105957449 105958186 -42825286 - MER21B LTR ERV1 -125 738 19 441 232 0 21 chr11 105958203 105958298 -42825174 - MER21B LTR ERV1 -770 93 1 21 36 0 0 chr11 105958587 105958615 -42824857 + AT_rich Low_complexity Low_complexity 1 28 0 308 192 55 0 chr11 105960265 105960338 -42823134 - L1PA15 LINE L1 -44 6121 6045 1522 122 13 4 chr11 105960338 105960575 -42822897 - Tigger2 DNA MER2_type -1659 1059 821 1152 176 9 36 chr11 105960636 105960858 -42822614 - Tigger2 DNA MER2_type -10 2708 2493 3840 183 53 6 chr11 105960877 105961665 -42821807 - Tigger2 DNA MER2_type -1892 826 2 417 174 12 0 chr11 105961898 105961984 -42821488 + MER53 DNA DNA 11 97 -92 264 366 27 18 chr11 105962032 105962144 -42821328 - L2 LINE L2 -44 3228 3116 21 36 0 0 chr11 105963367 105963395 -42820077 + AT_rich Low_complexity Low_complexity 1 28 0 30 27 0 0 chr11 105963644 105963681 -42819791 + AT_rich Low_complexity Low_complexity 1 37 0 340 304 18 9 chr11 105963831 105963943 -42819529 - MIR SINE MIR -85 177 65 373 164 0 0 chr11 105964024 105964091 -42819381 - U2 snRNA snRNA -111 77 11 2342 142 41 15 chr11 105964091 105964556 -42818916 + L1MA4 LINE L1 5817 6293 -7 382 189 100 0 chr11 105964822 105964904 -42818568 + MLT1B LTR MaLR 34 124 -266 252 330 27 9 chr11 105964904 105965016 -42818456 + MER34 LTR ERV1 1 114 -428 662 275 72 48 chr11 105965083 105965418 -42818054 + MER39 LTR ERV1 340 682 -25 1969 155 3 0 chr11 105965453 105965757 -42817715 - AluSx SINE Alu -7 305 1 738 210 26 142 chr11 105965781 105966090 -42817382 + MLT1B LTR MaLR 118 390 0 2037 117 0 3 chr11 105968355 105968637 -42814835 + AluSx SINE Alu 1 281 -31 209 32 0 32 chr11 105968640 105968671 -42814801 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 26 64 0 0 chr11 105968771 105968818 -42814654 + AT_rich Low_complexity Low_complexity 1 47 0 2096 173 40 28 chr11 105968930 105969464 -42814008 + MLT2A2 LTR ERVL 3 554 0 267 164 0 0 chr11 105969591 105969652 -42813820 + (CA)n Simple_repeat Simple_repeat 2 62 0 24 0 0 0 chr11 105969714 105969738 -42813734 + AT_rich Low_complexity Low_complexity 1 24 0 533 138 0 11 chr11 105970702 105970789 -42812683 - AluS SINE Alu -226 86 1 731 139 9 0 chr11 105971719 105971834 -42811638 + AluJ SINE Alu 4 119 -193 2056 204 29 50 chr11 105972120 105972645 -42810827 - MER67D LTR ERV1 0 514 1 1389 176 43 10 chr11 105973771 105974072 -42809400 + MER33 DNA MER1_type 1 311 -13 806 209 0 27 chr11 105974939 105975126 -42808346 + AluJ SINE Alu 122 303 -9 216 0 0 0 chr11 105975272 105975296 -42808176 + (A)n Simple_repeat Simple_repeat 1 24 0 606 253 63 4 chr11 105975296 105975526 -42807946 - L1M4 LINE L1 -1286 4860 4618 618 201 8 0 chr11 105975543 105975677 -42807795 - L1PA15 LINE L1 -1074 5072 4938 * 4354 142 32 73 chr11 105975671 105976535 -42806937 + L1PA15 LINE L1 5088 5895 -270 1994 139 7 0 chr11 105976535 105976823 -42806649 + AluSx SINE Alu 1 290 -22 4354 142 32 73 chr11 105976823 105977084 -42806388 + L1PA15 LINE L1 5895 6165 0 3240 252 50 58 chr11 105977083 105978635 -42804837 - L1M4 LINE L1 -1526 4620 3082 * 1872 122 43 7 chr11 105978770 105979049 -42804423 - AluSg SINE Alu -21 289 1 1217 228 11 20 chr11 105979059 105979415 -42804057 - L1M4 LINE L1 -3093 3053 2701 262 336 93 23 chr11 105979525 105979784 -42803688 - L3 LINE CR1 -151 1426 1150 5906 94 38 8 chr11 105979967 105981196 -42802276 + L1PA13 LINE L1 4880 6150 -13 1297 290 108 4 chr11 105982997 105983524 -42799948 + L1MD3 LINE L1 7404 7985 -10 858 222 6 6 chr11 105983647 105983809 -42799663 + MLT1D LTR MaLR 1 162 -343 271 357 29 8 chr11 105985994 105986238 -42797234 + L1MEd LINE L1 1029 1277 -4928 645 476 43 14 chr11 105986443 105986865 -42796607 - LTR16C LTR ERVL -23 468 35 22 35 0 0 chr11 105987200 105987229 -42796243 + AT_rich Low_complexity Low_complexity 1 29 0 13473 159 18 11 chr11 105987476 105989878 -42793594 + Tigger1 DNA MER2_type 1 2418 0 307 300 0 0 chr11 105989909 105989999 -42793473 + L1MEd LINE L1 2223 2312 -4084 1274 260 85 28 chr11 105990016 105990451 -42793021 + MLT1C LTR MaLR 6 465 -2 2850 243 34 3 chr11 105990456 105991213 -42792259 + MSTD-int LTR MaLR 5 887 -484 920 284 39 16 chr11 105991353 105991659 -42791813 + MSTD-int LTR MaLR 958 1270 -101 2063 206 67 22 chr11 105991715 105991979 -42791493 - L1MB4 LINE L1 -122 6058 5807 258 105 0 0 chr11 105991979 105992017 -42791455 + (TA)n Simple_repeat Simple_repeat 1 38 0 2063 206 67 22 chr11 105992017 105992305 -42791167 - L1MB4 LINE L1 -373 5807 5481 1054 157 55 18 chr11 105992303 105992577 -42790895 - L1MB4 LINE L1 -1560 4586 4303 * 917 327 98 10 chr11 105992696 105993115 -42790357 - L1M3a LINE L1 -5503 628 1 2188 241 20 10 chr11 105993115 105993704 -42789768 - L1M4 LINE L1 -960 5186 4592 244 217 58 0 chr11 105993722 105993791 -42789681 + MLT1C LTR MaLR 391 463 -4 254 329 47 22 chr11 105993917 105994194 -42789278 + L1MEd LINE L1 3436 3719 -2496 438 256 70 0 chr11 105994204 105994360 -42789112 - L1M4 LINE L1 -3787 2359 2193 799 274 65 44 chr11 105994362 105994913 -42788559 + L1ME3A LINE L1 4200 4762 -1453 314 240 108 16 chr11 105995125 105995254 -42788218 + L1P5 LINE L1 5296 5436 -718 1241 251 25 27 chr11 105995254 105995615 -42787857 - MLT1A1 LTR MaLR -2 363 10 240 289 19 19 chr11 105995629 105995733 -42787739 + L1ME3A LINE L1 5532 5635 -2219 319 288 105 20 chr11 105995812 105995965 -42787507 + L1ME3A LINE L1 5800 5965 -274 266 225 238 0 chr11 105996113 105996193 -42787279 + LTR1 LTR ERV1 27 125 -660 351 279 18 30 chr11 105996193 105996358 -42787114 + L1ME3A LINE L1 5858 6020 -219 1759 180 50 25 chr11 105996456 105996818 -42786654 - LOR1b LTR ERV1 -90 371 1 7544 97 2 0 chr11 105997079 105998943 -42784529 - L1PA7 LINE L1 -1 6153 4288 1651 199 49 23 chr11 105999065 105999451 -42784021 + MSTD LTR MaLR 1 396 0 240 322 7 56 chr11 105999624 105999767 -42783705 - MIR SINE MIR -13 249 114 22 0 0 0 chr11 105999899 105999921 -42783551 + AT_rich Low_complexity Low_complexity 1 22 0 321 337 34 34 chr11 106000397 106000572 -42782900 + MIR SINE MIR 10 184 -78 21 36 0 0 chr11 106002105 106002133 -42781339 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 106002198 106002219 -42781253 + AT_rich Low_complexity Low_complexity 1 21 0 713 370 72 47 chr11 106002353 106003016 -42780456 + L2 LINE L2 106 785 -2529 240 211 0 40 chr11 106003206 106003282 -42780190 + A-rich Low_complexity Low_complexity 4 76 0 400 329 45 48 chr11 106003657 106003995 -42779477 + L1ME3A LINE L1 1010 1257 -4862 695 260 67 94 chr11 106004162 106004421 -42779051 + L1ME3A LINE L1 3801 4065 -2064 1524 212 4 0 chr11 106004421 106004695 -42778777 - AluJb SINE Alu -28 284 10 695 260 67 94 chr11 106004695 106004835 -42778637 + L1ME3A LINE L1 4065 4207 -1922 2073 184 62 2 chr11 106004835 106005237 -42778235 - MSTB LTR MaLR 0 426 1 695 260 67 94 chr11 106005237 106005798 -42777674 + L1ME3A LINE L1 4207 4736 -1393 708 224 134 0 chr11 106005979 106006158 -42777314 + MER58A DNA MER1_type 4 206 -18 264 111 0 0 chr11 106006314 106006359 -42777113 + (CA)n Simple_repeat Simple_repeat 2 46 0 303 307 11 0 chr11 106006586 106006674 -42776798 + GA-rich Low_complexity Low_complexity 4 92 0 310 113 26 148 chr11 106006786 106006901 -42776571 - MSTA LTR MaLR 0 428 275 22 35 0 0 chr11 106007252 106007281 -42776191 + AT_rich Low_complexity Low_complexity 1 29 0 310 302 101 18 chr11 106007421 106007749 -42775723 + L1ME3A LINE L1 5577 5931 -222 451 291 81 58 chr11 106007831 106008312 -42775160 + L1MC4 LINE L1 5265 5756 -2052 469 371 44 7 chr11 106008523 106008817 -42774655 - L2 LINE L2 -1893 1421 1117 297 0 0 0 chr11 106008874 106008907 -42774565 + (TG)n Simple_repeat Simple_repeat 2 34 0 404 293 182 31 chr11 106009862 106010285 -42773187 + L2 LINE L2 2003 2489 -825 194 311 106 8 chr11 106010322 106010454 -42773018 + L2 LINE L2 2812 2956 -357 2089 85 0 0 chr11 106010610 106010892 -42772580 - L1PA8 LINE L1 0 6172 5891 386 222 74 9 chr11 106010930 106011038 -42772434 - LTR19C LTR ERV1 -2 777 663 12602 178 19 2 chr11 106011138 106013268 -42770204 - HUERS-P3 LTR ERV1 -2746 6173 4009 4831 133 6 48 chr11 106013264 106014060 -42769412 - HUERS-P3 LTR ERV1 -5131 3788 3026 * 269 135 19 0 chr11 106014161 106014213 -42769259 + (TA)n Simple_repeat Simple_repeat 2 54 0 309 227 0 72 chr11 106014224 106014321 -42769151 + L1MC4 LINE L1 6614 6703 -1339 * 332 216 29 59 chr11 106014271 106014373 -42769099 - L1MC4 LINE L1 -1339 6703 6605 2273 223 31 18 chr11 106014382 106014929 -42768543 - HUERS-P3 LTR ERV1 -8330 589 36 1432 209 57 68 chr11 106014954 106015451 -42768021 - MER61E LTR ERV1 -2 777 131 301 187 161 24 chr11 106015450 106015575 -42767897 - LTR9 LTR ERV1 -472 140 1 * 309 303 0 0 chr11 106015599 106015688 -42767784 + L2 LINE L2 3225 3313 0 906 174 26 15 chr11 106015971 106016166 -42767306 - L1MA9 LINE L1 0 6312 6116 191 366 50 10 chr11 106016200 106016301 -42767171 + MER5A DNA MER1_type 6 110 -79 194 115 0 0 chr11 106017467 106017493 -42765979 + L2 LINE L2 3268 3293 -20 4769 43 5 22 chr11 106017672 106017926 -42765546 - LTR10C LTR ERV1 0 591 334 2337 88 0 0 chr11 106017926 106018221 -42765251 - AluSg SINE Alu -15 295 1 4769 43 5 22 chr11 106018221 106018567 -42764905 - LTR10C LTR ERV1 -257 334 1 201 39 0 0 chr11 106018766 106018792 -42764680 + (TC)n Simple_repeat Simple_repeat 2 27 0 2144 114 0 7 chr11 106020340 106020637 -42762835 - AluSg SINE Alu -15 295 1 714 256 47 21 chr11 106020852 106021043 -42762429 + LTR40a LTR ERVL 139 334 -185 441 0 0 0 chr11 106021101 106021150 -42762322 + (TG)n Simple_repeat Simple_repeat 2 50 0 326 301 0 7 chr11 106021239 106021375 -42762097 + (TA)n Simple_repeat Simple_repeat 2 136 0 239 299 90 45 chr11 106021826 106022003 -42761469 + MLT1J LTR MaLR 290 474 -37 23 0 0 0 chr11 106022125 106022148 -42761324 + AT_rich Low_complexity Low_complexity 1 23 0 312 345 35 51 chr11 106022852 106023010 -42760462 + L2 LINE L2 1715 1867 -1447 2156 118 0 0 chr11 106023010 106023316 -42760156 - AluSc SINE Alu -3 306 1 312 345 35 51 chr11 106023316 106023470 -42760002 + L2 LINE L2 1867 2022 -1292 710 273 17 11 chr11 106023783 106023959 -42759513 + LTR28 LTR ERV1 3 179 -841 895 246 94 60 chr11 106023987 106024486 -42758986 + MER52A LTR ERV1 275 1470 -136 374 340 19 6 chr11 106024484 106024643 -42758829 + MER52A LTR ERV1 1593 1753 -2 * 240 355 9 0 chr11 106024647 106024754 -42758718 + L2 LINE L2 2429 2536 -778 795 304 60 32 chr11 106026413 106026652 -42756820 + L1MCc LINE L1 30 288 -6135 1908 100 4 8 chr11 106026652 106026911 -42756561 - AluY SINE Alu -15 296 39 795 304 60 32 chr11 106026911 106027108 -42756364 + L1MCc LINE L1 288 478 -5945 668 156 7 7 chr11 106027260 106027395 -42756077 - L1MA7 LINE L1 -2 6289 6155 648 143 34 8 chr11 106027408 106027527 -42755945 - L1MA6 LINE L1 -4 6296 6175 297 0 0 0 chr11 106027714 106027747 -42755725 + (TAA)n Simple_repeat Simple_repeat 1 33 0 286 296 199 20 chr11 106028034 106028230 -42755242 - MLT1J LTR MaLR -64 447 217 21 0 0 0 chr11 106028463 106028484 -42754988 + AT_rich Low_complexity Low_complexity 1 21 0 315 325 59 35 chr11 106028569 106028738 -42754734 - MIR3 SINE MIR -35 173 1 25 0 0 0 chr11 106029257 106029282 -42754190 + AT_rich Low_complexity Low_complexity 1 25 0 203 339 62 0 chr11 106030279 106030344 -42753128 - L2 LINE L2 -225 3047 2979 212 307 34 11 chr11 106030488 106030576 -42752896 + MER5B DNA MER1_type 44 133 -45 234 299 60 26 chr11 106030879 106030996 -42752476 - L1ME LINE L1 -448 5722 5602 26 50 0 0 chr11 106031049 106031089 -42752383 + AT_rich Low_complexity Low_complexity 1 40 0 187 104 42 0 chr11 106031100 106031148 -42752324 + (TA)n Simple_repeat Simple_repeat 2 51 0 44 0 0 0 chr11 106031159 106031203 -42752269 + AT_rich Low_complexity Low_complexity 1 44 0 657 219 143 14 chr11 106032369 106032663 -42750809 - MLT1D LTR MaLR -2 503 148 1557 213 59 67 chr11 106033055 106033550 -42749922 - MLT1D LTR MaLR -9 584 3 782 301 67 32 chr11 106033570 106034124 -42749348 - L1ME3A LINE L1 -83 6087 5515 490 276 107 53 chr11 106034132 106034582 -42748890 - L1ME3A LINE L1 -2193 3953 3480 723 270 105 44 chr11 106034584 106034947 -42748525 - MLT1H1 LTR MaLR 0 555 171 1809 72 0 0 chr11 106034947 106035170 -42748302 + AluY SINE Alu 1 223 -88 302 289 0 31 chr11 106035292 106035389 -42748083 - LTR19C LTR ERV1 -685 94 1 1186 300 64 34 chr11 106035389 106036408 -42747064 - HUERS-P3 LTR ERV1 -1 8398 7334 5081 227 39 16 chr11 106036863 106038172 -42745300 - HUERS-P3 LTR ERV1 -5023 1973 657 1806 133 0 0 chr11 106038233 106038496 -42744976 + AluSc SINE Alu 1 263 -46 21 71 0 0 chr11 106039313 106039355 -42744117 + AT_rich Low_complexity Low_complexity 1 42 0 376 323 36 36 chr11 106040362 106040585 -42742887 - L2 LINE L2 -884 2430 2208 211 362 103 17 chr11 106040661 106040777 -42742695 + MER5A DNA MER1_type 14 139 -50 2239 99 0 0 chr11 106041022 106041314 -42742158 + AluSc SINE Alu 1 292 -17 191 114 29 0 chr11 106042624 106042659 -42740813 + (TTA)n Simple_repeat Simple_repeat 1 36 0 399 347 99 25 chr11 106042660 106042902 -42740570 - MIR SINE MIR -2 260 1 273 128 0 0 chr11 106043159 106043206 -42740266 + (A)n Simple_repeat Simple_repeat 1 47 0 473 203 78 8 chr11 106043325 106043453 -42740019 - MER34 LTR ERV1 0 542 406 1612 217 111 12 chr11 106043499 106043803 -42739669 + MER41B LTR ERV1 138 340 -138 189 0 0 0 chr11 106043803 106043824 -42739648 + (TA)n Simple_repeat Simple_repeat 2 22 0 1612 217 111 12 chr11 106043824 106043979 -42739493 + MER41B LTR ERV1 340 478 0 1087 232 59 81 chr11 106043981 106044390 -42739082 - MER34 LTR ERV1 -142 400 1 24 0 0 0 chr11 106044500 106044524 -42738948 + AT_rich Low_complexity Low_complexity 1 24 0 776 320 90 7 chr11 106044811 106045059 -42738413 - LTR16C LTR ERVL 0 491 216 321 68 0 0 chr11 106045059 106045103 -42738369 + (TA)n Simple_repeat Simple_repeat 2 45 0 776 320 90 7 chr11 106045103 106045132 -42738340 - LTR16C LTR ERVL -275 216 191 26 30 0 0 chr11 106045842 106045875 -42737597 + AT_rich Low_complexity Low_complexity 1 33 0 332 18 455 0 chr11 106047659 106047714 -42735758 + MADE1 DNA Mariner 1 80 0 2086 100 4 0 chr11 106047873 106048142 -42735330 + AluSx SINE Alu 7 276 -36 23 0 0 0 chr11 106048150 106048173 -42735299 + AT_rich Low_complexity Low_complexity 1 23 0 401 324 97 51 chr11 106048613 106049086 -42734386 + L2 LINE L2 1622 2116 -1198 763 266 67 69 chr11 106049186 106049422 -42734050 + ERVL LTR ERVL 4937 5172 -592 1448 203 82 31 chr11 106049422 106049777 -42733695 - MER93b LTR ERV1 0 373 1 763 266 67 69 chr11 106049777 106049934 -42733538 + ERVL LTR ERVL 5172 5331 -433 351 0 0 0 chr11 106049934 106049973 -42733499 + (CA)n Simple_repeat Simple_repeat 2 40 0 763 266 67 69 chr11 106049973 106050056 -42733416 + ERVL LTR ERVL 5331 5413 -351 2086 164 75 27 chr11 106050102 106050516 -42732956 - Tigger2a DNA MER2_type 0 434 1 1771 265 50 44 chr11 106050794 106052190 -42731282 - L1ME1 LINE L1 -319 5847 4446 5201 101 5 8 chr11 106052196 106052951 -42730521 + L1PA13 LINE L1 5411 6163 0 261 59 0 0 chr11 106052955 106052989 -42730483 - MER58 DNA MER1_type -140 201 168 569 273 156 9 chr11 106053023 106053338 -42730134 - L1ME1 LINE L1 -1701 4445 4085 786 204 147 15 chr11 106053598 106053730 -42729742 + MLT1A2 LTR MaLR 1 114 -260 270 0 0 0 chr11 106053730 106053760 -42729712 + (TC)n Simple_repeat Simple_repeat 1 30 0 786 204 147 15 chr11 106053760 106053929 -42729543 + MLT1A2 LTR MaLR 114 374 0 1638 201 59 29 chr11 106054264 106054722 -42728750 + MLT2A2 LTR ERVL 50 554 0 780 187 64 35 chr11 106054872 106055075 -42728397 + MER3 DNA MER1_type 1 209 0 246 344 16 63 chr11 106056596 106056758 -42726714 + MIR SINE MIR 61 213 -49 388 228 13 0 chr11 106056758 106056837 -42726635 - MER5A DNA MER1_type 0 189 110 1507 232 57 31 chr11 106057184 106057621 -42725851 + MLT1C LTR MaLR 6 467 0 318 26 0 0 chr11 106058147 106058186 -42725286 + (TG)n Simple_repeat Simple_repeat 2 40 0 7767 202 91 19 chr11 106060026 106062128 -42721344 + L1MA2 LINE L1 16 2753 -4812 * 14546 184 33 10 chr11 106062119 106065988 -42717484 + L1MA2 LINE L1 3191 7158 -565 2630 113 46 2 chr11 106066001 106066415 -42717057 + L1MA2 LINE L1 7256 7687 -36 28 0 0 0 chr11 106066456 106066484 -42716988 + AT_rich Low_complexity Low_complexity 1 28 0 2588 110 12 5 chr11 106067966 106068367 -42715105 - L1PA13 LINE L1 -3 6160 5757 783 158 97 161 chr11 106068992 106069333 -42714139 - L1MD2 LINE L1 -65 6177 5859 * 3301 201 117 32 chr11 106069331 106070358 -42713114 - L1MDa LINE L1 -3917 2623 1510 1142 123 0 0 chr11 106070359 106070522 -42712950 + LOR1a LTR ERV1 335 497 0 511 231 61 101 chr11 106070533 106070780 -42712692 - L1MDa LINE L1 -6106 434 198 1294 244 20 50 chr11 106070795 106071152 -42712320 + MLT2C1 LTR ERVL 1 346 -51 542 191 38 0 chr11 106071152 106071257 -42712215 + MLT1C-int LTR MaLR 7 115 -1256 575 248 81 30 chr11 106071543 106071741 -42711731 + MIR SINE MIR 13 220 -42 260 364 9 9 chr11 106071831 106071941 -42711531 + MIR SINE MIR 2 111 -151 415 254 59 17 chr11 106073114 106073232 -42710240 - MER5A DNA MER1_type -32 157 35 197 447 53 0 chr11 106073594 106073746 -42709726 + L2 LINE L2 3104 3263 -9 1569 201 24 10 chr11 106073826 106074119 -42709353 + AluJo SINE Alu 1 297 -15 3642 183 10 17 chr11 106074287 106074993 -42708479 + MER67C LTR ERV1 9 709 -1 28 48 0 0 chr11 106075109 106075151 -42708321 + AT_rich Low_complexity Low_complexity 1 42 0 1312 113 5 10 chr11 106075195 106075398 -42708074 + AluSg SINE Alu 1 202 -108 599 308 53 22 chr11 106076061 106076288 -42707184 + MIR SINE MIR 11 244 -18 1749 168 96 3 chr11 106076519 106076853 -42706619 - MLT1A1 LTR MaLR 0 365 1 218 377 38 0 chr11 106078072 106078178 -42705294 + MIR SINE MIR 6 115 -147 272 365 24 24 chr11 106078604 106078730 -42704742 + MIR SINE MIR 30 155 -107 508 310 44 52 chr11 106078753 106078982 -42704490 - MIR SINE MIR -30 232 6 211 255 0 0 chr11 106079092 106079139 -42704333 + (CTG)n Simple_repeat Simple_repeat 2 48 0 239 65 0 0 chr11 106079377 106079408 -42704064 + HSMAR1 DNA Mariner 1257 1287 0 1823 136 11 21 chr11 106079620 106079933 -42703539 - AluSx SINE Alu 0 311 2 448 285 42 42 chr11 106080892 106081085 -42702387 + L2 LINE L2 3116 3308 -5 201 74 0 0 chr11 106081327 106081354 -42702118 + (CGAG)n Simple_repeat Simple_repeat 3 29 0 1891 130 35 3 chr11 106083572 106083857 -42699615 - AluSx SINE Alu -18 294 1 1286 165 47 11 chr11 106083970 106084249 -42699223 + L1MA9 LINE L1 6017 6305 -7 21 89 0 0 chr11 106084477 106084533 -42698939 + AT_rich Low_complexity Low_complexity 1 56 0 225 241 0 0 chr11 106084582 106084640 -42698832 + (TG)n Simple_repeat Simple_repeat 1 58 0 305 289 0 36 chr11 106085015 106085181 -42698291 + CT-rich Low_complexity Low_complexity 2 161 0 264 149 0 0 chr11 106085806 106085853 -42697619 + (TA)n Simple_repeat Simple_repeat 1 47 0 320 253 43 159 chr11 106085938 106086029 -42697443 - L1M4 LINE L1 -2277 4367 4267 297 109 0 0 chr11 106086029 106086075 -42697397 + (CA)n Simple_repeat Simple_repeat 1 46 0 320 253 43 159 chr11 106086075 106086378 -42697094 - L1M4 LINE L1 -2377 4267 4019 1995 200 39 40 chr11 106086394 106086921 -42696551 - L1MB7 LINE L1 -37 6143 5614 2128 179 32 25 chr11 106086921 106087329 -42696143 + MSTB LTR MaLR 1 411 -15 2141 91 3 3 chr11 106087335 106087620 -42695852 + AluSc SINE Alu 1 285 -24 668 199 112 58 chr11 106087657 106087863 -42695609 - L1MB7 LINE L1 -555 5619 5403 268 116 0 0 chr11 106087860 106087903 -42695569 + L1 LINE L1 4646 4688 -1458 * 1445 266 44 11 chr11 106087909 106088386 -42695086 - L1M4 LINE L1 -4937 1605 1113 396 226 12 0 chr11 106088388 106088472 -42695000 - L1M4 LINE L1 -5965 577 493 259 329 0 0 chr11 106088823 106088905 -42694567 + CT-rich Low_complexity Low_complexity 1 82 0 226 343 7 7 chr11 106089217 106089360 -42694112 + (TA)n Simple_repeat Simple_repeat 1 143 0 2040 198 41 29 chr11 106089438 106089857 -42693615 + Tigger2a DNA MER2_type 1 424 -10 474 297 81 52 chr11 106090074 106090455 -42693017 - L1M4 LINE L1 -3522 2624 2233 2241 88 3 19 chr11 106090723 106091031 -42692441 - AluSp SINE Alu -10 303 1 38 68 0 0 chr11 106091959 106092032 -42691440 + AT_rich Low_complexity Low_complexity 1 73 0 2211 120 38 19 chr11 106092239 106092607 -42690865 - THE1C LTR MaLR 0 375 1 29018 123 21 61 chr11 106092970 106099394 -42684078 + L1PA7 LINE L1 9 6154 0 24 53 0 0 chr11 106099878 106099916 -42683556 + AT_rich Low_complexity Low_complexity 1 38 0 3177 136 34 4 chr11 106100015 106100522 -42682950 - MER1A DNA MER1_type -1 526 5 1324 143 30 8 chr11 106100854 106101119 -42682353 - L1MA4 LINE L1 -1 6299 6029 1928 150 7 0 chr11 106101480 106101787 -42681685 + AluSx SINE Alu 1 309 -3 2222 80 0 26 chr11 106102001 106102303 -42681169 + AluSg SINE Alu 1 294 -16 425 340 87 8 chr11 106102842 106103083 -42680389 - MIR SINE MIR -1 261 2 651 219 0 16 chr11 106103408 106103531 -42679941 + FLAM_C SINE Alu 1 121 -22 207 100 0 0 chr11 106103531 106103561 -42679911 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 21 36 0 0 chr11 106104151 106104179 -42679293 + AT_rich Low_complexity Low_complexity 1 28 0 1630 173 3 48 chr11 106105356 106105668 -42677804 + AluSx SINE Alu 1 298 -14 952 159 0 0 chr11 106105911 106106056 -42677416 + AluSg/x SINE Alu 74 218 -94 25 0 0 0 chr11 106106171 106106196 -42677276 + AT_rich Low_complexity Low_complexity 1 25 0 269 230 27 14 chr11 106106955 106107029 -42676443 + GA-rich Low_complexity Low_complexity 2 76 0 225 310 52 43 chr11 106107340 106107395 -42676077 - MIR SINE MIR -92 170 117 638 210 24 0 chr11 106107395 106107519 -42675953 - FLAM_A SINE Alu -6 127 1 225 310 52 43 chr11 106107519 106107579 -42675893 - MIR SINE MIR -145 117 54 22 0 0 0 chr11 106107822 106107844 -42675628 + AT_rich Low_complexity Low_complexity 1 22 0 298 261 0 0 chr11 106109272 106109337 -42674135 + MIR SINE MIR 48 112 -150 543 322 82 0 chr11 106109852 106110060 -42673412 + MIR SINE MIR 17 241 -21 195 371 0 0 chr11 106111484 106111554 -42671918 - L2 LINE L2 -9 3304 3235 287 257 0 80 chr11 106112271 106112384 -42671088 + HAL1 LINE L1 2398 2501 -6 22 0 0 0 chr11 106112822 106112844 -42670628 + AT_rich Low_complexity Low_complexity 1 22 0 289 357 38 34 chr11 106113136 106113371 -42670101 + MIR SINE MIR 3 238 -24 2219 185 49 0 chr11 106113692 106114097 -42669375 + MSTB LTR MaLR 1 425 -1 778 213 0 7 chr11 106114469 106114619 -42668853 + MLT1A1 LTR MaLR 1 149 -216 1556 205 19 5 chr11 106114625 106114996 -42668476 - L1 LINE L1 -1628 4518 4143 * 3104 196 3 5 chr11 106114983 106115591 -42667881 - L1 LINE L1 -1827 4319 3713 * 5705 152 36 5 chr11 106115590 106116844 -42666628 + L1PB1 LINE L1 4513 5819 -332 414 0 0 0 chr11 106116844 106116890 -42666582 + (CA)n Simple_repeat Simple_repeat 2 47 0 5705 152 36 5 chr11 106116890 106117233 -42666239 + L1PB1 LINE L1 5819 6150 -1 536 218 29 15 chr11 106117291 106117443 -42666029 + MLT1A1 LTR MaLR 163 374 0 661 66 74 41 chr11 106117890 106118011 -42665461 + AluSq/x SINE Alu 8 132 -180 1270 219 88 30 chr11 106118934 106119332 -42664140 - LTR52 LTR ERVL 0 421 1 256 250 12 25 chr11 106119453 106119533 -42663939 + CT-rich Low_complexity Low_complexity 2 80 0 412 0 0 0 chr11 106120075 106120122 -42663350 - MADE1 DNA Mariner -27 53 7 304 354 87 10 chr11 106120356 106120562 -42662910 - L1M4c LINE L1 -4896 1488 1267 228 277 47 22 chr11 106120585 106120736 -42662736 - L1MEd LINE L1 -4698 1352 969 252 59 0 0 chr11 106121449 106121483 -42661989 + (CA)n Simple_repeat Simple_repeat 1 34 0 429 20 0 0 chr11 106121501 106121551 -42661921 + (TAGA)n Simple_repeat Simple_repeat 1 50 0 1499 173 53 108 chr11 106121861 106122084 -42661388 - MLT2A2 LTR ERVL 0 554 320 1866 85 26 15 chr11 106122084 106122356 -42661116 + AluSc SINE Alu 35 309 0 1499 173 53 108 chr11 106122356 106122722 -42660750 - MLT2A2 LTR ERVL -234 320 1 1097 209 116 37 chr11 106123716 106123984 -42659488 + AluJb SINE Alu 1 289 -13 1775 327 83 25 chr11 106124465 106124742 -42658730 - MERVL LTR ERVL -2115 2881 2622 2830 169 29 6 chr11 106124742 106125244 -42658228 - L1MB1 LINE L1 -5 6163 5647 212 0 36 0 chr11 106125244 106125272 -42658200 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2830 169 29 6 chr11 106125272 106125295 -42658177 - L1MB1 LINE L1 -521 5647 5626 1775 327 83 25 chr11 106125295 106125955 -42657517 - MERVL LTR ERVL -2374 2622 1889 692 248 7 0 chr11 106125971 106126108 -42657364 + MER45A DNA AcHobo 1 138 -40 629 238 11 39 chr11 106126109 106126290 -42657182 - MERVL LTR ERVL -3115 1881 1706 575 311 14 9 chr11 106126383 106126595 -42656877 - MERVL LTR ERVL -3597 1399 1187 667 332 49 22 chr11 106126595 106127047 -42656425 - LTR16B LTR ERVL 0 464 1 388 318 23 81 chr11 106127047 106127431 -42656041 - HERV16 LTR ERVL 0 4996 4635 283 373 51 30 chr11 106127569 106127942 -42655530 - MERVL LTR ERVL -573 4912 4532 2454 75 0 0 chr11 106128252 106128557 -42654915 - AluY SINE Alu -6 305 1 618 95 0 0 chr11 106128557 106128641 -42654831 - AluSg SINE Alu -226 84 1 180 261 123 0 chr11 106128653 106128718 -42654754 - MIR SINE MIR -79 183 111 245 384 60 15 chr11 106129378 106129511 -42653961 + MIR3 SINE MIR 7 145 -63 21 36 0 0 chr11 106129601 106129629 -42653843 + AT_rich Low_complexity Low_complexity 1 28 0 182 253 202 20 chr11 106130943 106131042 -42652430 - L2 LINE L2 0 3313 3197 317 291 0 0 chr11 106131169 106131248 -42652224 - L2 LINE L2 -319 2953 2875 7148 49 3 1 chr11 106132183 106133393 -42650079 + L1PA7 LINE L1 4938 6151 -3 497 276 42 48 chr11 106133883 106134079 -42649393 - MIR SINE MIR -41 221 36 1989 138 0 0 chr11 106134829 106135111 -42648361 + AluSg SINE Alu 10 291 -19 2408 68 3 7 chr11 106137633 106137940 -42645532 - AluY SINE Alu -5 306 1 483 294 14 66 chr11 106138162 106138309 -42645163 + LTR33 LTR ERVL 308 442 -79 1707 196 18 6 chr11 106138309 106138651 -42644821 + MER7A DNA MER2_type 1 344 -2 483 294 14 66 chr11 106138651 106138714 -42644758 + LTR33 LTR ERVL 442 507 -14 880 242 65 71 chr11 106138938 106139306 -42644166 + L1MA9 LINE L1 5909 6274 -38 1375 261 67 113 chr11 106139318 106141432 -42642040 + L1ME LINE L1 2235 4252 -1894 324 299 129 22 chr11 106141542 106141766 -42641706 + L1ME LINE L1 4981 5228 -918 21 82 0 0 chr11 106141778 106141827 -42641645 + AT_rich Low_complexity Low_complexity 1 49 0 356 249 127 32 chr11 106141852 106142153 -42641319 + L1ME LINE L1 5236 5573 -589 202 319 0 0 chr11 106142444 106142535 -42640937 + A-rich Low_complexity Low_complexity 1 91 0 2301 86 3 13 chr11 106142546 106142850 -42640622 + AluSp SINE Alu 1 301 -12 478 301 79 27 chr11 106142873 106143133 -42640339 + L1 LINE L1 2133 2419 -3727 2205 102 0 3 chr11 106143133 106143427 -42640045 + AluSc SINE Alu 1 293 -16 478 301 79 27 chr11 106143427 106143535 -42639937 + L1 LINE L1 2419 2520 -3626 233 293 51 38 chr11 106143548 106143705 -42639767 + L1 LINE L1 2601 2759 -3387 29 0 0 0 chr11 106144640 106144669 -42638803 + AT_rich Low_complexity Low_complexity 1 29 0 402 284 0 12 chr11 106145402 106145599 -42637873 + L1 LINE L1 2645 2836 -3310 1212 104 12 47 chr11 106146197 106146431 -42637041 + L1MA2 LINE L1 5970 6206 -98 253 282 118 71 chr11 106147094 106147264 -42636208 - MER5B DNA MER1_type 0 178 1 1483 138 23 11 chr11 106147703 106147963 -42635509 - Tigger5 DNA MER2_type -1 2322 2060 348 125 0 78 chr11 106147932 106147996 -42635476 - Tigger5 DNA MER2_type -2088 235 177 * 257 234 52 39 chr11 106148053 106148130 -42635342 + L2 LINE L2 3236 3313 0 6046 67 8 4 chr11 106148258 106149053 -42634419 + L1PA7 LINE L1 5352 6149 -5 2015 111 36 0 chr11 106149098 106149378 -42634094 - AluSx SINE Alu -16 296 7 252 322 44 0 chr11 106149415 106149505 -42633967 + MER5A DNA MER1_type 2 95 -94 330 291 134 0 chr11 106150208 106150335 -42633137 - MIR SINE MIR -118 144 1 351 0 0 0 chr11 106150493 106150532 -42632940 + (TG)n Simple_repeat Simple_repeat 2 40 0 1136 214 28 8 chr11 106150745 106150997 -42632475 + MLT2D LTR ERVL 1 257 -157 294 95 0 0 chr11 106151157 106151199 -42632273 + (A)n Simple_repeat Simple_repeat 1 42 0 329 324 141 0 chr11 106151309 106151451 -42632021 + L2 LINE L2 2642 2803 -511 293 151 0 19 chr11 106151476 106151529 -42631943 + L2 LINE L2 2748 2799 -515 853 222 101 0 chr11 106151533 106151731 -42631741 - MER58A DNA MER1_type -3 221 4 399 124 25 25 chr11 106151872 106151993 -42631479 + (TA)n Simple_repeat Simple_repeat 2 122 0 737 333 69 49 chr11 106152073 106152523 -42630949 + L2 LINE L2 2843 3301 -12 371 307 118 79 chr11 106153201 106153618 -42629854 - L1MC/D LINE L1 -2081 5727 5295 195 306 67 60 chr11 106154062 106154196 -42629276 - MER5A DNA MER1_type -28 161 27 2006 137 139 13 chr11 106154757 106155137 -42628335 - MSTA LTR MaLR 0 428 1 8639 188 31 2 chr11 106155137 106156742 -42626730 - MSTA-int LTR MaLR 0 1651 1 2569 127 49 5 chr11 106156742 106157152 -42626320 - MSTA LTR MaLR 0 428 1 212 322 46 0 chr11 106157547 106157634 -42625838 - MIR SINE MIR -74 188 98 1453 200 9 25 chr11 106157648 106157963 -42625509 - AluJo SINE Alu -2 310 1 1873 200 101 40 chr11 106158551 106159095 -42624377 - MER101B LTR ERV1 0 519 1 405 0 0 0 chr11 106160919 106160964 -42622508 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 796 266 65 65 chr11 106161209 106161627 -42621845 + LTR16A1 LTR ERVL 1 418 -39 231 114 0 0 chr11 106161639 106161674 -42621798 + (T)n Simple_repeat Simple_repeat 1 35 0 1908 321 50 28 chr11 106161712 106162597 -42620875 + ERVL LTR ERVL 2192 3095 -1901 283 292 80 69 chr11 106163160 106163448 -42620024 + ERVL LTR ERVL 5096 5386 -378 423 210 78 66 chr11 106164152 106164319 -42619153 + L1ME3A LINE L1 5784 5952 -218 2374 175 9 5 chr11 106164320 106164741 -42618731 - MER6 DNA MER2_type 0 865 443 501 104 0 0 chr11 106164741 106164808 -42618664 - PABL_A LTR ERV1 0 660 594 * 1340 120 92 0 chr11 106164804 106165021 -42618451 - PABL_A LTR ERV1 -423 237 1 1725 181 36 0 chr11 106165022 106165326 -42618146 - MER6 DNA MER2_type -420 445 131 4722 148 74 20 chr11 106165381 106165705 -42617767 - Tigger3b DNA MER2_type -1976 1052 747 2433 86 0 0 chr11 106165705 106166006 -42617466 - AluSq SINE Alu -11 302 2 4722 148 74 20 chr11 106166006 106166665 -42616807 - Tigger3b DNA MER2_type -2281 747 16 635 192 0 0 chr11 106166675 106166795 -42616677 - MER6 DNA MER2_type 0 865 746 1522 142 96 37 chr11 106166797 106167121 -42616351 + MER61A LTR ERV1 1 343 0 1166 221 133 36 chr11 106167121 106167469 -42616003 + MER61A-int LTR ERV1 1 391 -4826 2251 86 23 0 chr11 106167469 106167771 -42615701 + AluSg SINE Alu 1 309 -1 1166 221 133 36 chr11 106167771 106167806 -42615666 + MER61A-int LTR ERV1 391 421 -4796 180 0 0 0 chr11 106167922 106167942 -42615530 + (A)n Simple_repeat Simple_repeat 1 20 0 800 184 32 37 chr11 106167942 106168132 -42615340 + MER61A-int LTR ERV1 379 567 -4650 * 20836 103 42 24 chr11 106168112 106169906 -42613566 + MER61A-int LTR ERV1 1391 3152 -2065 246 284 14 14 chr11 106169906 106169980 -42613492 + L1MDa LINE L1 868 941 -5599 20836 103 42 24 chr11 106169980 106170959 -42612513 + MER61A-int LTR ERV1 3152 4306 -911 2973 160 29 87 chr11 106170959 106171426 -42612046 - LTR8 LTR ERV1 -2 689 279 2128 89 4 4 chr11 106171426 106171706 -42611766 - AluSg SINE Alu -30 280 1 2973 160 29 87 chr11 106171706 106171970 -42611502 - LTR8 LTR ERV1 -412 279 1 20836 103 42 24 chr11 106171970 106172481 -42610991 + MER61A-int LTR ERV1 4306 4807 -410 357 336 178 44 chr11 106172967 106173333 -42610139 - L2 LINE L2 -2863 451 37 1531 229 32 11 chr11 106173512 106173888 -42609584 + L1M2 LINE L1 5423 5806 -506 2414 87 0 0 chr11 106173888 106174188 -42609284 + AluSx SINE Alu 1 300 -12 1933 145 3 0 chr11 106175035 106175348 -42608124 + AluY SINE Alu 1 314 0 303 264 31 62 chr11 106175362 106175491 -42607981 + LTR16C LTR ERVL 367 491 0 361 350 51 18 chr11 106177826 106178043 -42605429 + L2 LINE L2 949 1172 -2142 219 306 47 12 chr11 106178268 106178353 -42605119 + L2 LINE L2 2431 2518 -796 2414 67 0 16 chr11 106178354 106178670 -42604802 + AluY SINE Alu 1 311 0 1493 204 68 51 chr11 106178865 106179231 -42604241 + MLT2D LTR ERVL 3 535 -19 324 0 0 0 chr11 106179347 106179383 -42604089 + (CA)n Simple_repeat Simple_repeat 1 36 0 266 79 26 0 chr11 106179388 106179426 -42604046 + MLT2C2 LTR ERVL 424 462 -2 198 326 95 21 chr11 106179611 106179706 -42603766 + L2 LINE L2 3169 3270 -2 460 283 0 81 chr11 106180977 106181150 -42602322 - MIR SINE MIR -16 246 88 19302 104 19 21 chr11 106181296 106185133 -42598339 - L1PA8 LINE L1 -1 6171 2347 21 0 0 0 chr11 106185742 106185763 -42597709 + AT_rich Low_complexity Low_complexity 1 21 0 1714 282 49 18 chr11 106186748 106187549 -42595923 - L1MEc LINE L1 -4027 2369 1544 2112 113 3 3 chr11 106187749 106188041 -42595431 - AluSg SINE Alu -18 292 1 24 0 0 0 chr11 106188044 106188068 -42595404 + AT_rich Low_complexity Low_complexity 1 24 0 231 289 49 90 chr11 106188096 106188292 -42595180 - L1MEc LINE L1 -5008 1388 1210 1992 172 34 8 chr11 106188292 106188647 -42594825 - THE1B LTR MaLR 0 364 1 231 289 49 90 chr11 106188647 106188796 -42594676 - L1MEc LINE L1 -5186 1210 1057 5931 177 8 23 chr11 106188888 106190710 -42592762 - L1PA12 LINE L1 -1 6167 4382 1788 149 21 51 chr11 106190710 106191085 -42592387 + THE1B LTR MaLR 1 364 0 5931 177 8 23 chr11 106191085 106191269 -42592203 - L1PA12 LINE L1 -1786 4382 4197 21 0 0 0 chr11 106191568 106191589 -42591883 + AT_rich Low_complexity Low_complexity 1 21 0 1344 146 89 12 chr11 106192490 106192737 -42590735 + THE1C LTR MaLR 110 375 0 1859 152 25 25 chr11 106192992 106193354 -42590118 - L1MA4A LINE L1 -19 6284 5923 588 324 82 38 chr11 106193423 106193863 -42589609 - L1M4 LINE L1 -2329 3817 3351 1374 238 58 6 chr11 106193863 106194207 -42589265 + MLT1A1 LTR MaLR 1 362 -3 588 324 82 38 chr11 106194207 106194269 -42589203 - L1M4 LINE L1 -2795 3351 3293 410 176 66 0 chr11 106195947 106196038 -42587434 + MER31-int LTR ERV1 871 967 -3969 2039 102 27 10 chr11 106197462 106197756 -42585716 - AluSq SINE Alu -14 299 1 1661 186 17 130 chr11 106198048 106198516 -42584956 + MSTB LTR MaLR 1 415 -11 302 182 15 0 chr11 106198916 106198982 -42584490 + CT-rich Low_complexity Low_complexity 5 71 0 483 281 161 52 chr11 106199387 106199654 -42583818 - L2 LINE L2 -345 2969 2674 201 236 125 0 chr11 106199656 106199728 -42583744 - L2 LINE L2 -1348 1966 1886 357 271 49 16 chr11 106199901 106200023 -42583449 + MIR SINE MIR 116 241 -21 290 350 25 6 chr11 106200040 106200203 -42583269 - L2 LINE L2 -1668 1646 1481 209 176 0 0 chr11 106201397 106201431 -42582041 + (TG)n Simple_repeat Simple_repeat 1 34 0 725 273 72 5 chr11 106201494 106201703 -42581769 - MER58A DNA MER1_type -1 223 1 1735 323 85 25 chr11 106201919 106202545 -42580927 + HERV16 LTR ERVL 1924 2622 -2374 2827 169 29 6 chr11 106202545 106202568 -42580904 + L1MB1 LINE L1 5626 5647 -521 212 0 36 0 chr11 106202568 106202596 -42580876 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2827 169 29 6 chr11 106202596 106203098 -42580374 + L1MB1 LINE L1 5647 6163 -5 1735 323 85 25 chr11 106203098 106203375 -42580097 + HERV16 LTR ERVL 2622 2881 -2115 1122 209 116 37 chr11 106203856 106204124 -42579348 - AluJb SINE Alu -13 289 1 1499 172 53 113 chr11 106205118 106205492 -42577980 + MLT2A2 LTR ERVL 1 319 -235 1886 91 26 0 chr11 106205492 106205756 -42577716 - AluSc SINE Alu -4 305 35 1499 172 53 113 chr11 106205756 106205979 -42577493 + MLT2A2 LTR ERVL 319 554 0 271 303 36 55 chr11 106206245 106206410 -42577062 - HERV16 LTR ERVL -1273 3723 3562 348 341 68 5 chr11 106206695 106206915 -42576557 - HERV16 LTR ERVL -4754 242 9 229 290 72 0 chr11 106208010 106208079 -42575393 + MIR SINE MIR 91 164 -98 365 239 57 23 chr11 106209128 106209306 -42574166 - MLT1J LTR MaLR -324 291 44 427 250 121 73 chr11 106209330 106209541 -42573931 + L1M4 LINE L1 3453 3689 -2457 1460 155 0 40 chr11 106209541 106209793 -42573679 + AluJo SINE Alu 39 280 -32 427 250 121 73 chr11 106209793 106209937 -42573535 + L1M4 LINE L1 3689 3825 -2321 * 476 228 10 0 chr11 106209935 106210036 -42573436 + L1M4 LINE L1 4043 4144 -2002 22 0 0 0 chr11 106210039 106210061 -42573411 + AT_rich Low_complexity Low_complexity 1 22 0 602 278 81 19 chr11 106211038 106211247 -42572225 + MER58A DNA MER1_type 1 222 -2 228 244 103 13 chr11 106212131 106212209 -42571263 + MIR SINE MIR 171 255 -7 282 258 0 0 chr11 106212223 106212285 -42571187 + (TG)n Simple_repeat Simple_repeat 1 62 0 272 233 0 33 chr11 106213573 106213633 -42569839 + L2 LINE L2 3210 3267 -5 784 239 109 51 chr11 106214438 106214694 -42568778 - L1ME LINE L1 -606 6263 6023 1464 192 3 24 chr11 106214694 106215001 -42568471 - AluJb SINE Alu 0 303 3 784 239 109 51 chr11 106215001 106215207 -42568265 - L1ME LINE L1 -846 6023 5782 483 257 40 11 chr11 106215203 106215378 -42568094 - L1ME LINE L1 -2088 4761 4582 * 527 244 25 93 chr11 106215388 106215667 -42567805 - L1ME LINE L1 -2389 4460 4201 1430 262 52 71 chr11 106215667 106216190 -42567282 - LTR40a LTR ERVL 0 519 7 506 254 91 0 chr11 106216205 106216370 -42567102 - L1ME LINE L1 -2654 4195 4016 237 98 0 0 chr11 106216421 106216462 -42567010 + (GA)n Simple_repeat Simple_repeat 2 42 0 2098 112 0 14 chr11 106216660 106216954 -42566518 + AluSx SINE Alu 1 290 -22 282 219 0 0 chr11 106218569 106218633 -42564839 + (TG)n Simple_repeat Simple_repeat 2 65 0 722 273 72 5 chr11 106218994 106219203 -42564269 + MER58A DNA MER1_type 1 223 -1 209 176 0 0 chr11 106219266 106219300 -42564172 + (CA)n Simple_repeat Simple_repeat 1 34 0 290 350 25 6 chr11 106220494 106220657 -42562815 + L2 LINE L2 1481 1646 -1668 351 289 50 8 chr11 106220674 106220795 -42562677 - MIR SINE MIR -21 241 116 202 236 125 0 chr11 106220968 106221040 -42562432 + L2 LINE L2 1886 1966 -1348 477 281 161 52 chr11 106221042 106221309 -42562163 + L2 LINE L2 2674 2969 -345 302 182 15 0 chr11 106221714 106221780 -42561692 + GA-rich Low_complexity Low_complexity 5 71 0 1652 186 17 130 chr11 106222181 106222649 -42560823 - MSTB LTR MaLR -11 415 1 1992 103 27 10 chr11 106222941 106223233 -42560239 + AluSq SINE Alu 1 297 -16 1149 46 13 7 chr11 106223337 106223488 -42559984 - AluYb8 SINE Alu -166 152 1 476 236 85 18 chr11 106225362 106225527 -42557945 - MIR SINE MIR -49 213 38 2621 241 9 13 chr11 106225563 106226432 -42557040 - L1PA15-16 LINE L1 -3253 3596 2735 5709 197 32 4 chr11 106226439 106226882 -42556590 + L1PA16 LINE L1 3951 4380 -1786 234 0 0 0 chr11 106226882 106226908 -42556564 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 5709 197 32 4 chr11 106226908 106228618 -42554854 + L1PA16 LINE L1 4380 6164 -2 1715 100 142 0 chr11 106228862 106229123 -42554349 + AluSx SINE Alu 2 299 -3 23 33 0 0 chr11 106229123 106229153 -42554319 + AT_rich Low_complexity Low_complexity 1 30 0 300 211 18 0 chr11 106229262 106229319 -42554153 - LTR54B LTR ERV1 -440 58 1 2366 82 7 0 chr11 106229552 106229858 -42553614 - AluSc SINE Alu -1 308 1 31 0 0 0 chr11 106231340 106231371 -42552101 + AT_rich Low_complexity Low_complexity 1 31 0 1734 189 0 0 chr11 106231371 106231652 -42551820 - AluJb SINE Alu -27 285 5 8567 199 4 12 chr11 106231740 106234426 -42549046 + L1PA15 LINE L1 3424 6164 -1 2127 108 3 3 chr11 106235228 106235523 -42547949 + AluSc SINE Alu 1 295 -14 428 238 67 36 chr11 106235847 106236040 -42547432 - MER20B DNA MER1_type -50 733 535 229 363 59 0 chr11 106236140 106236242 -42547230 + LTR33 LTR ERVL 90 197 -324 1476 180 11 21 chr11 106236253 106236537 -42546935 - AluJo SINE Alu -27 285 5 348 346 62 14 chr11 106236608 106236819 -42546653 + LTR33 LTR ERVL 275 495 -26 1445 139 9 0 chr11 106237285 106237500 -42545972 + AluSg/x SINE Alu 85 301 -9 1855 104 21 11 chr11 106237501 106237780 -42545692 + AluSp SINE Alu 2 283 -30 191 241 63 51 chr11 106238457 106238536 -42544936 + MIR SINE MIR 156 235 -27 205 353 66 29 chr11 106238737 106238873 -42544599 + MIR SINE MIR 46 186 -76 25 90 0 0 chr11 106238981 106239048 -42544424 + AT_rich Low_complexity Low_complexity 1 67 0 1261 178 4 56 chr11 106239325 106239634 -42543838 + AluJo SINE Alu 28 322 0 21 0 0 0 chr11 106239643 106239664 -42543808 + AT_rich Low_complexity Low_complexity 1 21 0 347 333 8 39 chr11 106239886 106240015 -42543457 + L2 LINE L2 2548 2672 -642 37 62 0 0 chr11 106240031 106240096 -42543376 + AT_rich Low_complexity Low_complexity 1 65 0 22 35 0 0 chr11 106240185 106240214 -42543258 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr11 106241004 106241025 -42542447 + AT_rich Low_complexity Low_complexity 1 21 0 2160 185 47 7 chr11 106241197 106241640 -42541832 - LOR1b LTR ERV1 0 461 1 3940 131 38 39 chr11 106242483 106243788 -42539684 - pTR5 LTR ERV1 0 2468 1524 25 0 0 0 chr11 106243840 106243865 -42539607 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr11 106243974 106244002 -42539470 + AT_rich Low_complexity Low_complexity 1 28 0 593 231 28 37 chr11 106244174 106244390 -42539082 + LTR37B LTR ERV1 214 427 -41 22 0 0 0 chr11 106245284 106245306 -42538166 + AT_rich Low_complexity Low_complexity 1 22 0 1567 189 4 4 chr11 106245306 106245586 -42537886 - AluJo SINE Alu -22 290 11 1365 203 9 38 chr11 106246366 106246681 -42536791 - AluSx SINE Alu -6 306 1 246 32 0 0 chr11 106246682 106246713 -42536759 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1898 124 3 60 chr11 106246719 106247050 -42536422 + AluSx SINE Alu 1 312 0 277 274 38 89 chr11 106248247 106248404 -42535068 + MER31-int LTR ERV1 3952 4100 -836 530 267 23 61 chr11 106248762 106248803 -42534669 + LTR37B LTR ERV1 198 239 -229 2198 102 0 0 chr11 106248803 106249123 -42534349 + AluSg SINE Alu 1 320 0 530 267 23 61 chr11 106249123 106249341 -42534131 + LTR37B LTR ERV1 239 449 -19 421 239 77 57 chr11 106249341 106249588 -42533884 + L1ME2 LINE L1 5397 5648 -514 566 233 141 3 chr11 106249648 106249846 -42533626 + L1ME2 LINE L1 5822 6048 -116 360 302 29 58 chr11 106250177 106250316 -42533156 + L1MC4a LINE L1 5603 5737 -384 269 276 31 24 chr11 106250317 106250444 -42533028 + L1MC4a LINE L1 5839 5966 -1842 316 280 8 109 chr11 106251205 106251444 -42532028 - MLT1J LTR MaLR -167 344 130 1783 119 47 18 chr11 106252564 106252864 -42530608 - AluSq SINE Alu 0 308 1 508 309 87 4 chr11 106252924 106253154 -42530318 + MER46C DNA MER2_type 79 327 -11 195 258 146 11 chr11 106254577 106254666 -42528806 + MIR SINE MIR 81 181 -81 461 296 30 0 chr11 106255278 106255413 -42528059 - MIR SINE MIR -4 258 120 23 0 0 0 chr11 106256257 106256280 -42527192 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr11 106257408 106257431 -42526041 + (GA)n Simple_repeat Simple_repeat 2 24 0 22 35 0 0 chr11 106257543 106257572 -42525900 + AT_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr11 106257891 106257929 -42525543 + AT_rich Low_complexity Low_complexity 1 38 0 6372 83 10 0 chr11 106258432 106259794 -42523678 - L1PA8A LINE L1 0 6131 4770 8486 196 41 18 chr11 106259794 106259874 -42523598 + L1P LINE L1 3149 3226 -2920 2157 114 3 0 chr11 106259874 106260180 -42523292 + AluSg SINE Alu 1 307 -3 8486 196 41 18 chr11 106260180 106261746 -42521726 + L1P LINE L1 3226 4833 -1313 23 0 0 0 chr11 106261847 106261870 -42521602 + AT_rich Low_complexity Low_complexity 1 23 0 547 244 80 57 chr11 106261980 106262279 -42521193 - L1ME3A LINE L1 -6 6164 5859 3603 211 35 6 chr11 106262321 106263203 -42520269 + L1 LINE L1 4427 5334 -812 739 312 67 30 chr11 106263210 106263271 -42520201 - L1ME3A LINE L1 -747 5399 5342 2083 158 22 3 chr11 106263271 106263626 -42519846 - THE1B LTR MaLR -2 362 1 739 312 67 30 chr11 106263626 106264205 -42519267 - L1ME3A LINE L1 -804 5342 4735 599 264 0 0 chr11 106264242 106264371 -42519101 - FLAM_A SINE Alu -4 129 1 1260 211 65 45 chr11 106264372 106264519 -42518953 - L1MA9 LINE L1 -62 6250 6107 1185 214 86 16 chr11 106264519 106264832 -42518640 + MER44D DNA MER2_type 2 606 -3 1260 211 65 45 chr11 106264832 106265102 -42518370 - L1MA9 LINE L1 -205 6107 5825 2454 206 16 64 chr11 106265102 106265715 -42517757 - MER52A LTR ERV1 0 1755 1172 3474 194 170 68 chr11 106265780 106266904 -42516568 - MER52A LTR ERV1 -406 1349 4 1567 221 8 20 chr11 106266904 106267142 -42516330 - L1MA9 LINE L1 -484 5828 5594 2006 190 53 12 chr11 106267142 106267553 -42515919 - MSTA LTR MaLR 0 428 1 1567 221 8 20 chr11 106267553 106267667 -42515805 - L1MA9 LINE L1 -718 5594 5480 894 188 38 0 chr11 106267675 106267718 -42515754 - AluJo SINE Alu -137 175 135 351 0 0 0 chr11 106267718 106267757 -42515715 + (TTA)n Simple_repeat Simple_repeat 1 39 0 894 188 38 0 chr11 106267757 106267873 -42515599 - AluJo SINE Alu -177 135 10 1254 146 10 9 chr11 106267879 106268143 -42515329 - L1MA9 LINE L1 -743 5403 5222 1005 148 142 0 chr11 106268313 106268496 -42514976 + MER2 DNA MER2_type 2 210 -135 22 70 0 0 chr11 106268496 106268539 -42514933 + AT_rich Low_complexity Low_complexity 1 43 0 210 37 0 0 chr11 106268613 106268640 -42514832 + (TC)n Simple_repeat Simple_repeat 1 27 0 474 18 0 0 chr11 106268643 106268698 -42514774 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 180 77 0 0 chr11 106268768 106268794 -42514678 + (CA)n Simple_repeat Simple_repeat 1 26 0 2079 114 0 0 chr11 106269401 106269705 -42513767 - AluY SINE Alu 0 304 1 25 0 0 0 chr11 106270109 106270134 -42513338 + AT_rich Low_complexity Low_complexity 1 25 0 21 71 0 0 chr11 106270173 106270215 -42513257 + AT_rich Low_complexity Low_complexity 1 42 0 544 235 39 25 chr11 106270242 106270446 -42513026 - L1M4 LINE L1 -1487 4659 4453 238 325 72 0 chr11 106270465 106270548 -42512924 + L2 LINE L2 3225 3313 0 445 282 14 19 chr11 106271215 106271368 -42512104 - MIR SINE MIR -39 223 75 21 0 0 0 chr11 106271428 106271449 -42512023 + AT_rich Low_complexity Low_complexity 1 21 0 521 30 15 0 chr11 106271645 106271712 -42511760 + (TCTA)n Simple_repeat Simple_repeat 3 70 0 856 275 75 34 chr11 106271712 106272097 -42511375 - MLT2D LTR ERVL -10 404 4 674 30 40 0 chr11 106272104 106272205 -42511267 + (TCTA)n Simple_repeat Simple_repeat 4 108 0 247 270 30 10 chr11 106272814 106272914 -42510558 - L1MA7 LINE L1 0 6291 6190 252 0 0 0 chr11 106272915 106272943 -42510529 + (TG)n Simple_repeat Simple_repeat 1 28 0 6504 192 26 9 chr11 106272943 106275234 -42508238 - L1MA7 LINE L1 -140 6151 3821 657 278 98 38 chr11 106275214 106275747 -42507725 - L1M4 LINE L1 -2587 3559 2995 * 810 187 12 35 chr11 106275803 106275974 -42507498 + AluJb SINE Alu 140 306 -6 201 211 11 22 chr11 106276130 106276220 -42507252 + CT-rich Low_complexity Low_complexity 2 90 0 477 284 86 38 chr11 106276329 106276621 -42506851 - L1MC5 LINE L1 -733 7228 6923 618 218 12 47 chr11 106276783 106276953 -42506519 - L1MD2 LINE L1 -13 6346 6183 531 326 32 14 chr11 106276959 106277242 -42506230 - L1MC4 LINE L1 -948 6945 6572 281 359 48 10 chr11 106277611 106277820 -42505652 + LTR33 LTR ERVL 305 521 0 2276 102 0 0 chr11 106278071 106278366 -42505106 + AluSx SINE Alu 1 295 -17 286 265 36 0 chr11 106278900 106278983 -42504489 - L3 LINE CR1 -89 1488 1403 812 318 29 26 chr11 106279511 106279860 -42503612 + L1M3b LINE L1 500 849 -5930 229 253 81 0 chr11 106279857 106279944 -42503528 + L1M3b LINE L1 2474 2567 -4282 * 2952 242 15 24 chr11 106279945 106280111 -42503361 + L1M1 LINE L1 2991 3157 -4408 2188 103 0 0 chr11 106280111 106280411 -42503061 + AluSc SINE Alu 1 300 -9 2952 242 15 24 chr11 106280411 106281528 -42501944 + L1M1 LINE L1 3157 4262 -3303 322 333 0 0 chr11 106281986 106282103 -42501369 - LTR33 LTR ERVL -396 125 9 548 245 126 49 chr11 106282162 106282474 -42500998 + MSTD LTR MaLR 1 384 -12 425 214 56 28 chr11 106282573 106282751 -42500721 + MER53 DNA DNA 4 186 -3 208 191 21 0 chr11 106282807 106282854 -42500618 + (TAA)n Simple_repeat Simple_repeat 3 50 0 452 292 104 7 chr11 106282856 106283000 -42500472 + MER63A DNA MER1_type 53 210 0 186 71 0 0 chr11 106283010 106283038 -42500434 + (T)n Simple_repeat Simple_repeat 1 28 0 689 145 8 32 chr11 106283141 106283265 -42500207 + L1PB4 LINE L1 5676 5796 -360 224 231 11 33 chr11 106283268 106283320 -42500152 + (TA)n Simple_repeat Simple_repeat 2 53 -37 1778 200 5 21 chr11 106283320 106283695 -42499777 + L1PB4 LINE L1 5782 6150 -6 224 231 11 33 chr11 106283695 106283733 -42499739 + (TA)n Simple_repeat Simple_repeat 53 90 0 402 288 34 23 chr11 106284162 106284339 -42499133 + L1P LINE L1 4876 5054 -1092 336 377 53 24 chr11 106284575 106284986 -42498486 + L1ME LINE L1 5297 5719 -451 3119 232 81 31 chr11 106284991 106286505 -42496967 + L1M4b LINE L1 726 2320 -4639 2349 147 9 54 chr11 106286543 106286991 -42496481 - MSTA LTR MaLR 0 428 1 1952 94 3 88 chr11 106287382 106287711 -42495761 + AluSx SINE Alu 1 301 -11 1000 281 45 33 chr11 106287823 106288616 -42494856 + L1M4b LINE L1 2732 3497 -3460 782 209 6 6 chr11 106288630 106288788 -42494684 + AluJo SINE Alu 1 158 -154 410 71 71 0 chr11 106288788 106288858 -42494614 - MLT2A2 LTR ERVL -378 75 1 567 238 8 0 chr11 106288940 106289066 -42494406 + Alu SINE Alu 176 302 -9 774 270 185 0 chr11 106289083 106289538 -42493934 + L1M4b LINE L1 3530 4068 -2889 1181 195 133 28 chr11 106289590 106289913 -42493559 + L1MB8 LINE L1 5643 5999 -179 711 127 42 0 chr11 106289914 106290032 -42493440 - MLT2A2 LTR ERVL 0 453 331 * 730 92 37 0 chr11 106290026 106290135 -42493337 - MLT2A2 LTR ERVL -340 113 1 606 191 7 7 chr11 106290195 106290331 -42493141 + L1MB8 LINE L1 6043 6178 0 2041 101 0 36 chr11 106290671 106290979 -42492493 - AluSc SINE Alu -12 297 1 2005 124 7 0 chr11 106291326 106291608 -42491864 + AluSq SINE Alu 1 284 -29 234 0 0 0 chr11 106291611 106291637 -42491835 + (TAA)n Simple_repeat Simple_repeat 3 28 0 181 224 103 35 chr11 106291688 106291746 -42491726 + MIR SINE MIR 47 108 -154 2404 68 0 16 chr11 106291851 106292161 -42491311 + AluY SINE Alu 1 305 -6 1070 166 0 0 chr11 106292316 106292491 -42490981 + AluSg/x SINE Alu 121 295 -17 2122 107 17 3 chr11 106292866 106293157 -42490315 + AluSx SINE Alu 1 295 -17 6827 35 4 0 chr11 106293334 106294170 -42489302 - L1P LINE L1 -3492 2654 1816 * 9254 35 1 2 chr11 106294159 106295315 -42488157 + L1P LINE L1 2656 3810 -2336 23 0 0 0 chr11 106295710 106295733 -42487739 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr11 106295776 106295811 -42487661 + AT_rich Low_complexity Low_complexity 1 35 0 8437 242 58 40 chr11 106295993 106296165 -42487307 + L1MB3 LINE L1 4 171 -6248 285 29 0 0 chr11 106296165 106296199 -42487273 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 8437 242 58 40 chr11 106296199 106297529 -42485943 + L1MB3 LINE L1 171 1476 -4943 1930 112 0 4 chr11 106297529 106297798 -42485674 - AluSq SINE Alu -7 306 39 8437 242 58 40 chr11 106297798 106297863 -42485609 + L1MB3 LINE L1 1476 1538 -4881 253 114 0 0 chr11 106297863 106297898 -42485574 - AluSq SINE Alu -267 35 1 8437 242 58 40 chr11 106297898 106300275 -42483197 + L1MB3 LINE L1 1538 3871 -2548 2077 129 0 3 chr11 106300275 106300577 -42482895 + AluSx SINE Alu 6 306 -6 8437 242 58 40 chr11 106300577 106300988 -42482484 + L1MB3 LINE L1 3871 4273 -2146 360 43 0 0 chr11 106300988 106301034 -42482438 + (CA)n Simple_repeat Simple_repeat 1 46 0 8437 242 58 40 chr11 106301034 106302938 -42480534 + L1MB3 LINE L1 4273 6419 0 2090 221 70 21 chr11 106303418 106304001 -42479471 + L1MC3 LINE L1 6084 6695 -1090 1655 203 27 0 chr11 106304017 106304352 -42479120 + L1MC3 LINE L1 7169 7512 -273 398 83 33 0 chr11 106304461 106304558 -42478914 + L1PA6 LINE L1 6072 6170 0 299 264 0 11 chr11 106304787 106304878 -42478594 + L1MC4 LINE L1 6614 6703 -1339 227 340 49 27 chr11 106304885 106305070 -42478402 - MLT1J LTR MaLR 0 511 323 8477 61 119 7 chr11 106305171 106306488 -42476984 + L1P LINE L1 6 1446 -4700 12665 26 4 4 chr11 106306588 106308463 -42475009 - L1P1 LINE L1 -391 5764 3890 1148 92 0 0 chr11 106308563 106308715 -42474757 - AluSg/x SINE Alu -40 272 121 2028 122 0 21 chr11 106308726 106309039 -42474433 - AluSc SINE Alu 0 307 1 771 262 47 52 chr11 106309039 106309427 -42474045 - L1M4 LINE L1 -2104 4042 3655 2315 94 0 0 chr11 106309427 106309724 -42473748 + AluSx SINE Alu 1 297 -15 771 262 47 52 chr11 106309724 106309759 -42473713 - L1M4 LINE L1 -2491 3655 3621 3594 169 11 8 chr11 106309914 106310602 -42472870 - HUERS-P2 LTR ERV1 -1395 1693 1150 680 272 77 50 chr11 106310607 106310930 -42472542 - L1MEc LINE L1 -6012 384 53 318 26 0 0 chr11 106311344 106311383 -42472089 + (CA)n Simple_repeat Simple_repeat 2 40 0 276 178 56 0 chr11 106311387 106311494 -42471978 + (TA)n Simple_repeat Simple_repeat 1 113 0 1992 142 0 0 chr11 106313354 106313649 -42469823 + AluSx SINE Alu 1 295 -17 285 304 52 9 chr11 106315094 106315209 -42468263 + L2 LINE L2 3193 3312 -1 21 0 0 0 chr11 106316261 106316282 -42467190 + AT_rich Low_complexity Low_complexity 1 21 0 379 371 60 20 chr11 106316670 106316918 -42466554 - LTR16A LTR ERVL -174 276 19 460 342 182 10 chr11 106317042 106317543 -42465929 + MLT1G LTR MaLR 1 590 0 29 0 0 0 chr11 106318412 106318441 -42465031 + AT_rich Low_complexity Low_complexity 1 29 0 2321 84 0 3 chr11 106318913 106319210 -42464262 + AluSq SINE Alu 4 299 -14 288 53 0 0 chr11 106319228 106319266 -42464206 + (CA)n Simple_repeat Simple_repeat 1 38 0 23 33 0 0 chr11 106319542 106319572 -42463900 + AT_rich Low_complexity Low_complexity 1 30 0 2216 82 0 10 chr11 106320419 106320722 -42462750 - AluY SINE Alu -11 300 1 1802 120 62 0 chr11 106320956 106321232 -42462240 + AluSx SINE Alu 1 293 -19 601 267 50 50 chr11 106321332 106321607 -42461865 - L1MC5 LINE L1 -46 7915 7638 1550 150 25 102 chr11 106321607 106321968 -42461504 + MER1B DNA MER1_type 4 336 -1 601 267 50 50 chr11 106321968 106322055 -42461417 - L1MC5 LINE L1 -322 7639 7553 226 250 266 0 chr11 106323382 106323446 -42460026 - MER5B DNA MER1_type 0 178 98 2158 116 0 3 chr11 106323556 106323858 -42459614 - AluSx SINE Alu -9 303 3 198 0 0 0 chr11 106324843 106324865 -42458607 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 211 329 109 19 chr11 106324865 106325066 -42458406 + MIR SINE MIR 38 260 -2 223 323 69 60 chr11 106325175 106325407 -42458065 - L2 LINE L2 -85 3228 2995 216 0 0 0 chr11 106325443 106325467 -42458005 + (TG)n Simple_repeat Simple_repeat 2 25 0 25 31 0 0 chr11 106326527 106326559 -42456913 + AT_rich Low_complexity Low_complexity 1 32 0 32 0 0 0 chr11 106327111 106327143 -42456329 + AT_rich Low_complexity Low_complexity 1 32 0 209 388 15 0 chr11 106327784 106327851 -42455621 - L3 LINE CR1 -1494 83 16 1753 112 7 54 chr11 106328228 106328522 -42454950 - AluSx SINE Alu -32 280 1 395 308 145 87 chr11 106329097 106329613 -42453859 - L2 LINE L2 -581 2733 2188 596 237 159 30 chr11 106329766 106330061 -42453411 + Charlie4a DNA MER1_type 172 504 -4 235 291 12 12 chr11 106330129 106330215 -42453257 - L2 LINE L2 -1216 2098 2013 312 315 9 0 chr11 106330481 106330592 -42452880 + L1M4 LINE L1 4280 4391 -1755 827 289 105 18 chr11 106330592 106330924 -42452548 + MLT1A1 LTR MaLR 13 373 -1 2217 232 46 28 chr11 106330933 106331644 -42451828 + L1M4 LINE L1 4439 5162 -984 398 357 57 30 chr11 106331710 106332080 -42451392 + L2 LINE L2 1772 2151 -1163 2232 88 0 23 chr11 106332287 106332593 -42450879 - AluSg SINE Alu -11 299 1 15209 207 45 8 chr11 106332610 106333177 -42450295 - L1PB1 LINE L1 0 6867 6323 2193 123 0 0 chr11 106333177 106333470 -42450002 - AluY SINE Alu -18 293 1 15209 207 45 8 chr11 106333470 106339377 -42444095 - L1PB1 LINE L1 -544 6323 7 270 385 26 0 chr11 106340648 106340765 -42442707 - MIR3 SINE MIR -48 160 41 253 350 121 15 chr11 106341476 106341719 -42441753 + L2 LINE L2 2781 3046 -226 1624 181 136 36 chr11 106341812 106342142 -42441330 - LTR54B LTR ERV1 -5 493 105 2068 123 0 7 chr11 106342142 106342443 -42441029 + AluSg SINE Alu 1 299 -11 1624 181 136 36 chr11 106342443 106342560 -42440912 - LTR54B LTR ERV1 -393 105 1 23 33 0 0 chr11 106342563 106342593 -42440879 + AT_rich Low_complexity Low_complexity 1 30 0 24 67 0 0 chr11 106343055 106343100 -42440372 + AT_rich Low_complexity Low_complexity 1 45 0 2092 118 7 7 chr11 106343247 106343552 -42439920 + AluSp SINE Alu 1 305 -8 21 0 0 0 chr11 106344955 106344976 -42438496 + AT_rich Low_complexity Low_complexity 1 21 0 186 250 0 0 chr11 106345456 106345512 -42437960 + CT-rich Low_complexity Low_complexity 3 58 0 189 0 0 0 chr11 106345931 106345952 -42437520 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 684 120 0 0 chr11 106345953 106346102 -42437370 - AluSp/q SINE Alu 0 336 188 2109 114 0 26 chr11 106346993 106347299 -42436173 - AluY SINE Alu -13 298 1 345 61 20 0 chr11 106347416 106347465 -42436007 - MADE1 DNA Mariner -30 50 1 239 323 90 0 chr11 106348024 106348225 -42435247 + L1MC4a LINE L1 3743 3961 -2185 322 300 95 83 chr11 106348455 106348708 -42434764 + L1MC4a LINE L1 5719 5974 -1834 2318 74 0 26 chr11 106348834 106349146 -42434326 - AluY SINE Alu -3 308 5 28 29 0 0 chr11 106349226 106349261 -42434211 + AT_rich Low_complexity Low_complexity 1 35 0 435 232 0 54 chr11 106351892 106352004 -42431468 - MER5A DNA MER1_type -80 109 4 253 340 72 0 chr11 106352562 106352659 -42430813 - MIR SINE MIR -110 152 49 724 243 7 0 chr11 106352747 106352891 -42430581 - LTR26B LTR ERV1 0 531 387 363 62 78 31 chr11 106352891 106352955 -42430517 + MER4A LTR ERV1 32 98 -566 1727 125 172 71 chr11 106352955 106353322 -42430150 + MER4A LTR ERV1 261 664 0 303 196 54 27 chr11 106353409 106353521 -42429951 - L1ME LINE L1 -351 5796 5682 2061 124 0 7 chr11 106353636 106353935 -42429537 + AluSq SINE Alu 1 297 -16 2120 78 0 0 chr11 106354045 106354313 -42429159 + AluY SINE Alu 39 306 -5 304 240 101 42 chr11 106354317 106354534 -42428938 - L1ME LINE L1 -750 5379 5150 2081 174 9 0 chr11 106355027 106355372 -42428100 + MER7A DNA MER2_type 1 346 0 22 35 0 0 chr11 106355856 106355885 -42427587 + AT_rich Low_complexity Low_complexity 1 29 0 21 89 0 0 chr11 106355953 106356009 -42427463 + AT_rich Low_complexity Low_complexity 1 56 0 400 298 66 31 chr11 106356141 106356430 -42427042 - L1ME LINE L1 -2060 4069 3771 2054 125 0 3 chr11 106356937 106357240 -42426232 + AluY SINE Alu 1 302 -9 1121 136 0 0 chr11 106357243 106357405 -42426067 + AluSg/x SINE Alu 128 289 -23 26 88 0 0 chr11 106357405 106357473 -42425999 + AT_rich Low_complexity Low_complexity 1 68 0 339 309 105 24 chr11 106357501 106357711 -42425761 - L1ME LINE L1 -3168 2961 2735 1943 221 107 54 chr11 106358179 106358963 -42424509 + LTR1B LTR ERV1 1 826 0 1898 73 0 87 chr11 106359028 106359316 -42424156 - AluY SINE Alu -15 296 34 309 211 48 10 chr11 106359913 106360017 -42423455 - L1ME LINE L1 -4906 1223 1116 433 272 30 6 chr11 106360135 106360304 -42423168 - L1ME LINE L1 -4982 1137 965 7478 36 0 0 chr11 106360363 106361845 -42421627 + L1PA5 LINE L1 4660 6147 -7 432 0 0 0 chr11 106361914 106361962 -42421510 + (TA)n Simple_repeat Simple_repeat 2 49 0 218 125 25 0 chr11 106362224 106362264 -42421208 + T-rich Low_complexity Low_complexity 2 42 0 357 368 121 57 chr11 106362273 106362854 -42420618 - L1ME LINE L1 -5500 619 2 193 313 25 25 chr11 106362862 106362942 -42420530 - L2 LINE L2 -570 2744 2665 489 183 119 0 chr11 106364699 106364825 -42418647 - L1MA8 LINE L1 -7 6284 6144 * 687 117 17 42 chr11 106364821 106364915 -42418557 + L1P4 LINE L1 5687 5780 -386 1833 87 4 0 chr11 106364915 106365175 -42418297 + AluSp SINE Alu 54 314 0 687 117 17 42 chr11 106365175 106365199 -42418273 + L1P4 LINE L1 5780 5803 -363 * 6659 198 24 11 chr11 106365176 106365791 -42417681 + L1PA15 LINE L1 3781 4386 -1779 189 0 0 0 chr11 106365791 106365812 -42417660 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 6659 198 24 11 chr11 106365812 106366874 -42416598 + L1PA15 LINE L1 4386 5490 -675 2242 101 0 3 chr11 106366874 106367182 -42416290 + AluSq SINE Alu 1 307 -6 6659 198 24 11 chr11 106367182 106367864 -42415608 + L1PA15 LINE L1 5490 6161 -4 356 248 185 47 chr11 106370331 106370585 -42412887 + HsTC2b DNA Tc2 66 354 -561 886 201 42 38 chr11 106370600 106370889 -42412583 + MER33 DNA MER1_type 35 324 0 497 226 50 77 chr11 106370893 106371054 -42412418 + HsTC2b DNA Tc2 348 512 -1386 806 251 27 9 chr11 106371054 106371273 -42412199 + MER58A DNA MER1_type 2 224 0 497 226 50 77 chr11 106371273 106371332 -42412140 + HsTC2b DNA Tc2 512 738 -180 1430 261 88 12 chr11 106371831 106372570 -42410902 + L1ME1 LINE L1 5094 5894 -272 * 1979 209 80 25 chr11 106372303 106372816 -42410656 + L1MB2 LINE L1 5628 6168 -3 371 292 46 50 chr11 106373001 106373261 -42410211 + L1ME LINE L1 5272 5530 -636 705 355 31 18 chr11 106373422 106373813 -42409659 - LTR33 LTR ERVL -102 419 24 220 324 10 20 chr11 106374185 106374287 -42409185 + CT-rich Low_complexity Low_complexity 3 103 0 243 286 0 0 chr11 106374758 106374842 -42408630 - L1MC4 LINE L1 -1339 6703 6620 31 0 0 0 chr11 106375308 106375339 -42408133 + AT_rich Low_complexity Low_complexity 1 31 0 23 68 0 0 chr11 106375657 106375701 -42407771 + AT_rich Low_complexity Low_complexity 1 44 0 218 203 0 16 chr11 106379859 106379923 -42403549 + (TA)n Simple_repeat Simple_repeat 2 64 0 28 61 0 0 chr11 106379938 106379987 -42403485 + AT_rich Low_complexity Low_complexity 1 49 0 2192 84 11 0 chr11 106379987 106380271 -42403201 - AluY SINE Alu -24 287 1 345 62 0 0 chr11 106380722 106380770 -42402702 + (CA)n Simple_repeat Simple_repeat 2 49 0 1590 159 4 0 chr11 106381023 106381268 -42402204 + AluSx SINE Alu 1 246 -66 7572 193 113 24 chr11 106381268 106382877 -42400595 + MER52A LTR ERV1 3 1754 -1 387 149 0 68 chr11 106382877 106382940 -42400532 + Alu SINE Alu 244 301 0 230 250 36 0 chr11 106382976 106383032 -42400440 + HAL1 LINE L1 407 464 -2043 2022 199 28 5 chr11 106383645 106384033 -42399439 + MER57A LTR ERV1 7 403 0 201 167 0 0 chr11 106384150 106384186 -42399286 + A-rich Low_complexity Low_complexity 1 36 0 2008 127 7 0 chr11 106384653 106384966 -42398506 - AluSx SINE Alu 0 312 1 277 311 191 29 chr11 106385139 106385380 -42398092 + HAL1 LINE L1 672 951 -1556 192 77 0 0 chr11 106386039 106386065 -42397407 + (CAAAAA)n Simple_repeat Simple_repeat 5 30 0 338 269 53 64 chr11 106386265 106386547 -42396925 + L1M4 LINE L1 4175 4453 -1693 646 301 190 19 chr11 106386554 106386992 -42396480 + MLT1G1 LTR MaLR 16 593 -2 506 262 43 55 chr11 106387084 106387340 -42396132 + L1ME3A LINE L1 5888 6140 -30 930 122 0 0 chr11 106387726 106387857 -42395615 + AluSc SINE Alu 1 131 -178 5834 154 11 35 chr11 106388061 106388371 -42395101 + L1PB1 LINE L1 5010 5326 -825 1883 130 7 0 chr11 106388371 106388640 -42394832 + AluSq SINE Alu 27 297 -16 5834 154 11 35 chr11 106388640 106389106 -42394366 + L1PB1 LINE L1 5326 5742 -409 2267 70 31 0 chr11 106389106 106389392 -42394080 + AluY SINE Alu 1 295 -16 5834 154 11 35 chr11 106389392 106389790 -42393682 + L1PB1 LINE L1 5742 6148 -3 272 163 0 0 chr11 106389810 106389853 -42393619 + L1ME3A LINE L1 5522 5564 -606 949 224 48 80 chr11 106389902 106390254 -42393218 - MLT1A2 LTR MaLR -28 346 6 963 326 57 17 chr11 106390256 106390838 -42392634 + L1ME3A LINE L1 5557 6161 -9 5262 237 67 35 chr11 106390985 106394012 -42389460 + L1 LINE L1 7 4191 -2915 3970 185 10 31 chr11 106394014 106394927 -42388545 + L1 LINE L1 5367 6260 -846 500 351 100 52 chr11 106395121 106395941 -42387531 + HAL1 LINE L1 57 915 -1592 307 311 0 42 chr11 106396434 106396553 -42386919 + L1MEc LINE L1 915 1028 -5368 515 290 248 26 chr11 106397072 106397716 -42385756 + HAL1 LINE L1 1649 2435 -72 298 348 28 34 chr11 106397907 106398085 -42385387 - L2 LINE L2 -1010 2304 2128 895 189 31 77 chr11 106398707 106398929 -42384543 - MER20 DNA MER1_type -7 212 1 210 407 47 0 chr11 106399616 106399702 -42383770 - L2 LINE L2 -375 2938 2849 1148 289 32 55 chr11 106399862 106400354 -42383118 - L2 LINE L2 -849 2465 1985 333 269 115 0 chr11 106401386 106401516 -42381956 - MIR SINE MIR -14 248 104 351 281 44 0 chr11 106401539 106401674 -42381798 - L2 LINE L2 -1307 2007 1867 295 372 61 24 chr11 106401705 106401869 -42381603 - L2 LINE L2 -1394 1920 1751 2346 120 56 0 chr11 106401902 106402259 -42381213 + MER51B LTR ERV1 1 377 0 8062 148 48 21 chr11 106402259 106403714 -42379758 + MER51B-int LTR ERV1 1 1495 -6321 241 229 0 0 chr11 106403730 106403778 -42379694 + MER4A LTR ERV1 51 98 -566 632 188 78 26 chr11 106403821 106403975 -42379497 + MER4A LTR ERV1 373 534 -130 8662 100 59 3 chr11 106403978 106405405 -42378067 + MER51B-int LTR ERV1 986 3265 -4551 1928 159 53 9 chr11 106405397 106405856 -42377616 + MER51B-int LTR ERV1 1881 4693 -2303 * 8003 132 62 33 chr11 106405842 106408364 -42375108 + MER51B-int LTR ERV1 2341 7816 0 2442 95 49 22 chr11 106408365 106408653 -42374819 + MER51B LTR ERV1 1 303 -74 1963 125 0 59 chr11 106408653 106408974 -42374498 - AluSq SINE Alu -11 302 1 2442 95 49 22 chr11 106408974 106409052 -42374420 + MER51B LTR ERV1 303 377 0 618 353 116 32 chr11 106409110 106409585 -42373887 - L2 LINE L2 -1666 1648 1214 2127 113 0 0 chr11 106409585 106409877 -42373595 + AluSg SINE Alu 1 292 -18 618 353 116 32 chr11 106409877 106410300 -42373172 - L2 LINE L2 -2100 1214 675 325 380 52 52 chr11 106410315 106410755 -42372717 - L2 LINE L2 -2788 526 87 349 143 0 0 chr11 106411592 106411641 -42371831 + MER2 DNA MER2_type 291 339 -6 1769 226 109 50 chr11 106411713 106412236 -42371236 - MLT2B3 LTR ERVL 0 554 1 2249 77 39 0 chr11 106412295 106412580 -42370892 + AluSx SINE Alu 1 296 -16 319 203 101 0 chr11 106412645 106412721 -42370751 + MLT2B1 LTR ERVL 1 84 -431 1167 109 17 6 chr11 106412721 106412895 -42370577 + LOR1a LTR ERV1 1 176 -321 865 147 67 7 chr11 106412890 106413040 -42370432 + LOR1a LTR ERV1 329 487 -10 * 2017 181 11 86 chr11 106413050 106413525 -42369947 + MLT2B1 LTR ERVL 81 519 -1 230 135 0 0 chr11 106413624 106413661 -42369811 + MER65A LTR ERV1 9 45 -400 1692 158 6 44 chr11 106413673 106413990 -42369482 + AluJo SINE Alu 1 305 -7 1813 155 18 55 chr11 106414027 106414407 -42369065 + MER65A LTR ERV1 52 417 -28 231 299 13 0 chr11 106415600 106415677 -42367795 - MIR SINE MIR -107 155 78 33 56 0 0 chr11 106416385 106416439 -42367033 + AT_rich Low_complexity Low_complexity 1 54 0 1002 164 31 15 chr11 106417173 106417368 -42366104 + L1MA7 LINE L1 5876 6073 -218 312 70 0 0 chr11 106417618 106417661 -42365811 + (CA)n Simple_repeat Simple_repeat 1 43 0 367 272 14 95 chr11 106417695 106417842 -42365630 - MIR SINE MIR -108 154 20 1794 163 3 3 chr11 106418471 106418760 -42364712 + AluSx SINE Alu 1 289 -23 541 101 9 9 chr11 106418764 106418873 -42364599 + (TA)n Simple_repeat Simple_repeat 2 110 0 193 191 0 32 chr11 106419536 106419599 -42363873 + GA-rich Low_complexity Low_complexity 4 64 0 2236 156 13 5 chr11 106419958 106420330 -42363142 + THE1C LTR MaLR 1 375 0 1413 262 62 57 chr11 106420362 106420893 -42362579 + MLT1F1 LTR MaLR 1 559 -8 836 145 0 8 chr11 106421196 106421327 -42362145 - AluSg/x SINE Alu -11 299 170 933 203 16 0 chr11 106421351 106421533 -42361939 - MLT1B LTR MaLR -203 187 3 474 18 0 0 chr11 106422013 106422068 -42361404 + (TA)n Simple_repeat Simple_repeat 1 55 0 239 369 8 49 chr11 106422100 106422222 -42361250 + MIR SINE MIR 28 144 -64 196 158 49 12 chr11 106422256 106422338 -42361134 + (TA)n Simple_repeat Simple_repeat 1 85 0 2672 110 0 3 chr11 106422887 106423250 -42360222 + THE1B LTR MaLR 1 362 -2 402 57 0 0 chr11 106423428 106423481 -42359991 + (TG)n Simple_repeat Simple_repeat 2 54 0 200 293 131 40 chr11 106423581 106423680 -42359792 + MIR SINE MIR 117 224 -38 381 212 50 30 chr11 106424336 106424435 -42359037 + MLT1E2 LTR MaLR 1 101 -525 1021 74 0 7 chr11 106424437 106424572 -42358900 - MER85 DNA T2_type -5 134 1 1700 268 40 32 chr11 106424572 106425095 -42358377 + MLT1E2 LTR MaLR 100 626 0 1096 171 81 32 chr11 106425236 106425482 -42357990 - THE1C LTR MaLR -116 259 2 1653 161 21 25 chr11 106425482 106425762 -42357710 - AluJo SINE Alu -33 279 1 520 269 81 0 chr11 106425990 106426139 -42357333 + MLT1E LTR MaLR 3 163 -430 651 275 22 6 chr11 106426141 106426319 -42357153 + MLT1E LTR MaLR 413 593 0 2037 134 3 0 chr11 106426831 106427138 -42356334 + AluY SINE Alu 1 308 -3 1269 109 17 0 chr11 106427162 106427337 -42356135 + AluSg/x SINE Alu 121 298 -14 188 311 27 14 chr11 106427821 106427895 -42355577 - MIR3 SINE MIR -11 197 123 2352 83 0 19 chr11 106427944 106428256 -42355216 - AluY SINE Alu -5 306 1 1291 277 86 37 chr11 106428304 106429109 -42354363 - L1MEc LINE L1 -2661 3879 3004 1200 244 33 19 chr11 106429109 106429469 -42354003 - MLT1A1 LTR MaLR 0 365 1 1291 277 86 37 chr11 106429469 106429771 -42353701 - L1MEc LINE L1 -3536 3004 2718 2541 295 46 18 chr11 106429843 106430558 -42352914 + L1MCb LINE L1 48 800 -5245 207 69 0 0 chr11 106430558 106430587 -42352885 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 2541 295 46 18 chr11 106430587 106430845 -42352627 + L1MCb LINE L1 800 1049 -4996 1398 178 29 19 chr11 106430845 106431183 -42352289 - MER61C LTR ERV1 0 434 1 2289 265 51 26 chr11 106431183 106431426 -42352046 + L1MCb LINE L1 1047 1283 -5462 1982 134 0 0 chr11 106431426 106431717 -42351755 + AluY SINE Alu 21 311 0 2289 265 51 26 chr11 106431717 106432709 -42350763 + L1MCb LINE L1 1283 2515 -4230 2775 206 77 68 chr11 106432727 106433568 -42349904 + L1MC3 LINE L1 6505 7353 -432 943 229 30 122 chr11 106433587 106433951 -42349521 - MLT1A1 LTR MaLR 0 365 40 1732 48 3 130 chr11 106433951 106434244 -42349228 - L1PA8 LINE L1 -5 6167 5912 943 229 30 122 chr11 106434244 106434281 -42349191 - MLT1A1 LTR MaLR -325 40 1 7510 215 22 52 chr11 106434281 106434417 -42349055 - MLT1A1-int LTR MaLR 0 1735 1597 551 227 92 0 chr11 106434417 106434536 -42348936 + FLAM_A SINE Alu 1 130 -3 7510 215 22 52 chr11 106434536 106436187 -42347285 - MLT1A1-int LTR MaLR -138 1597 1 954 233 26 103 chr11 106436187 106436577 -42346895 - MLT1A1 LTR MaLR 0 365 11 936 166 5 57 chr11 106436578 106436771 -42346701 + L1MC3 LINE L1 7372 7554 -231 1035 84 0 0 chr11 106436771 106436902 -42346570 + AluSg/x SINE Alu 166 296 -14 341 221 36 64 chr11 106436905 106437045 -42346427 + L1MC3 LINE L1 7625 7760 -25 273 182 127 18 chr11 106437109 106437219 -42346253 - L1MEc LINE L1 -4006 2715 2594 426 205 16 63 chr11 106437226 106437353 -42346119 - MER3 DNA MER1_type -6 203 83 623 262 68 40 chr11 106437393 106437847 -42345625 - L1MEc LINE L1 -4390 2150 1684 336 349 41 55 chr11 106438292 106438584 -42344888 - MLT1J2 LTR MaLR -32 418 131 1687 148 159 29 chr11 106438584 106438617 -42344855 - MSTA LTR MaLR -1 427 400 2005 138 3 0 chr11 106438617 106438908 -42344564 + AluSq SINE Alu 3 294 -19 1687 148 159 29 chr11 106438908 106439252 -42344220 - MSTA LTR MaLR -28 400 1 892 333 52 39 chr11 106439346 106440073 -42343399 + L1MEc LINE L1 73 809 -5587 296 313 39 19 chr11 106440387 106440643 -42342829 + L1MEc LINE L1 2200 2460 -3755 3943 143 46 57 chr11 106440785 106441553 -42341919 + LTR1 LTR ERV1 24 782 -3 349 272 88 35 chr11 106441555 106441669 -42341803 + HUERS-P2 LTR ERV1 1 120 -2968 4975 176 41 26 chr11 106441674 106442643 -42340829 + HUERS-P2 LTR ERV1 243 1226 -1862 * 9217 136 41 11 chr11 106442641 106444071 -42339401 + HUERS-P2 LTR ERV1 1615 3088 0 2765 120 52 54 chr11 106444124 106444855 -42338617 + LTR1 LTR ERV1 20 785 0 447 261 58 84 chr11 106444929 106445393 -42338079 + L1MEc LINE L1 2592 3043 -3172 238 146 24 0 chr11 106445489 106445530 -42337942 + Alu SINE Alu 1 42 -261 491 114 0 25 chr11 106445530 106445609 -42337863 + AluSg/x SINE Alu 199 275 -34 183 80 0 0 chr11 106445648 106445673 -42337799 + (GGAA)n Simple_repeat Simple_repeat 4 28 0 425 264 102 37 chr11 106445883 106446099 -42337373 + L1MDa LINE L1 2146 2375 -4165 2416 176 36 0 chr11 106446119 106446590 -42336882 + L1MC1 LINE L1 5458 5945 -388 248 409 29 7 chr11 106446604 106446741 -42336731 + L2 LINE L2 2920 3059 -254 1453 220 60 20 chr11 106447416 106447863 -42335609 + MLT2B1 LTR ERVL 5 515 0 212 325 0 12 chr11 106447864 106447947 -42335525 + (CATATA)n Simple_repeat Simple_repeat 3 84 0 22 0 0 0 chr11 106448721 106448743 -42334729 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr11 106449279 106449301 -42334171 + AT_rich Low_complexity Low_complexity 1 22 0 349 275 209 16 chr11 106449556 106449677 -42333795 - L1M4b LINE L1 -6630 229 133 189 107 0 0 chr11 106449677 106449705 -42333767 + (TG)n Simple_repeat Simple_repeat 2 29 0 349 275 209 16 chr11 106449705 106449765 -42333707 - L1M4b LINE L1 -6726 133 13 322 135 0 0 chr11 106450403 106450455 -42333017 + L1M1 LINE L1 2646 2697 -4868 21 0 0 0 chr11 106450683 106450704 -42332768 + AT_rich Low_complexity Low_complexity 1 21 0 5722 31 4 0 chr11 106450704 106451383 -42332089 - L1PA4 LINE L1 0 6155 5474 609 337 95 52 chr11 106451684 106451831 -42331641 - L2 LINE L2 -218 3095 2956 1077 265 108 54 chr11 106451831 106452352 -42331120 - MLT1H LTR MaLR 0 549 1 609 337 95 52 chr11 106452352 106452816 -42330656 - L2 LINE L2 -357 2956 2456 265 347 73 76 chr11 106452840 106453512 -42329960 + L2 LINE L2 1981 2650 -664 6794 184 39 16 chr11 106453976 106456135 -42327337 + L1M1 LINE L1 3076 5284 -2281 24081 32 1 0 chr11 106456236 106460961 -42322511 + L1PA3 LINE L1 1444 6171 0 2216 117 0 0 chr11 106461731 106462038 -42321434 - AluSx SINE Alu -5 307 1 335 333 105 21 chr11 106462436 106462786 -42320686 - L2 LINE L2 -225 3047 2668 28 29 0 0 chr11 106463753 106463788 -42319684 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr11 106463923 106463947 -42319525 + AT_rich Low_complexity Low_complexity 1 24 0 265 339 39 8 chr11 106464616 106464746 -42318726 + MIR SINE MIR 14 147 -115 995 282 79 37 chr11 106464747 106465534 -42317938 + L1M1 LINE L1 5547 6392 -1173 1560 270 62 48 chr11 106465821 106466653 -42316819 - L1ME1 LINE L1 -5 6161 5318 24 0 0 0 chr11 106466675 106466699 -42316773 + AT_rich Low_complexity Low_complexity 1 24 0 29 60 0 0 chr11 106466739 106466789 -42316683 + AT_rich Low_complexity Low_complexity 1 50 0 21 36 0 0 chr11 106466900 106466928 -42316544 + AT_rich Low_complexity Low_complexity 1 28 0 218 286 91 0 chr11 106466977 106467054 -42316418 + MIR SINE MIR 68 151 -111 189 279 38 51 chr11 106468584 106468663 -42314809 - MIR SINE MIR -93 115 38 216 97 0 0 chr11 106469481 106469512 -42313960 + (CATATA)n Simple_repeat Simple_repeat 3 33 0 5831 176 36 15 chr11 106469615 106470835 -42312637 + L1MA3 LINE L1 4074 5367 -938 2123 119 3 7 chr11 106470835 106471138 -42312334 + AluSc SINE Alu 1 302 -7 5831 176 36 15 chr11 106471138 106472091 -42311381 + L1MA3 LINE L1 5367 6298 -7 25 51 0 0 chr11 106472302 106472341 -42311131 + AT_rich Low_complexity Low_complexity 1 39 0 2338 93 7 0 chr11 106472770 106473080 -42310392 + AluSp SINE Alu 1 312 -1 387 0 0 0 chr11 106473091 106473134 -42310338 + (CA)n Simple_repeat Simple_repeat 2 44 0 23 54 0 0 chr11 106473208 106473245 -42310227 + AT_rich Low_complexity Low_complexity 1 37 0 245 255 145 14 chr11 106473246 106473391 -42310081 + L1MDa LINE L1 1847 2010 -4530 * 6961 18 0 0 chr11 106473390 106474188 -42309284 - L1PA2 LINE L1 -2 6153 5356 10192 33 0 0 chr11 106474188 106476177 -42307295 - L1PA2 LINE L1 -2 6153 4165 657 31 21 21 chr11 106476177 106476258 -42307214 - L1PA2 LINE L1 -1637 4509 4426 378 73 0 0 chr11 106476253 106476308 -42307164 + L1P LINE L1 3033 3087 -3059 * 1793 206 8 35 chr11 106476919 106477313 -42306159 + MLT1B LTR MaLR 8 390 0 225 218 129 30 chr11 106477667 106477768 -42305704 + L1M4b LINE L1 1261 1371 -5488 1514 277 22 42 chr11 106477780 106478281 -42305191 + L1M4b LINE L1 757 1247 -5641 2415 261 103 18 chr11 106478375 106479335 -42304137 + L1M4b LINE L1 1448 2325 -4633 2190 85 13 50 chr11 106479335 106479653 -42303819 + AluSg SINE Alu 2 307 -3 2415 261 103 18 chr11 106479653 106479925 -42303547 + L1M4b LINE L1 2325 2749 -4209 2372 115 0 0 chr11 106479925 106480238 -42303234 + AluSq SINE Alu 1 313 0 2415 261 103 18 chr11 106480238 106480316 -42303156 + L1M4b LINE L1 2749 2819 -4139 7580 229 67 70 chr11 106480400 106480876 -42302596 + L1M4b LINE L1 3386 3861 -3096 790 131 123 0 chr11 106480876 106481006 -42302466 - MER1B DNA MER1_type 0 339 194 7580 229 67 70 chr11 106481006 106481718 -42301754 + L1M4b LINE L1 3861 4573 -2384 505 191 130 0 chr11 106481718 106481833 -42301639 + FLAM_A SINE Alu 2 131 -2 7580 229 67 70 chr11 106481833 106482976 -42300496 + L1M4b LINE L1 4573 5842 -1115 2897 194 47 79 chr11 106482980 106484360 -42299112 - L1MA6 LINE L1 -19 6281 4959 3913 198 25 22 chr11 106484361 106485478 -42297994 + L1MA9 LINE L1 5827 6948 -175 2168 120 3 0 chr11 106485478 106485769 -42297703 - AluSp SINE Alu -19 294 3 19224 113 53 15 chr11 106486000 106489540 -42293932 + HERV17 LTR ERV1 1 2972 0 1068 126 0 0 chr11 106489540 106489690 -42293782 + HERV17 LTR ERV1 4757 4906 -3493 1953 117 44 12 chr11 106489675 106490516 -42292956 + HERV17 LTR ERV1 703 4471 -3314 * 4533 103 11 0 chr11 106490511 106491143 -42292329 + HERV17 LTR ERV1 7757 8395 -4 4405 81 181 51 chr11 106491148 106491879 -42291593 + LTR12 LTR ERV1 1 826 0 2034 190 49 7 chr11 106492380 106492806 -42290666 - MER65A LTR ERV1 0 445 2 23 78 0 0 chr11 106493981 106494032 -42289440 + AT_rich Low_complexity Low_complexity 1 51 0 2037 118 0 0 chr11 106494234 106494506 -42288966 + AluSx SINE Alu 21 292 -20 1869 68 34 34 chr11 106494640 106494905 -42288567 - AluY SINE Alu -11 300 36 2392 80 0 3 chr11 106495308 106495608 -42287864 - AluY SINE Alu -12 299 1 21 57 0 0 chr11 106495680 106495715 -42287757 + AT_rich Low_complexity Low_complexity 1 35 0 271 342 40 0 chr11 106496041 106496117 -42287355 + MIR SINE MIR 65 143 -65 733 250 52 10 chr11 106496192 106496384 -42287088 + MIR SINE MIR 13 212 -50 253 67 22 22 chr11 106496709 106496754 -42286718 + (GAA)n Simple_repeat Simple_repeat 1 45 0 2076 97 0 64 chr11 106496900 106497229 -42286243 + AluY SINE Alu 1 308 -3 365 330 44 34 chr11 106497833 106498039 -42285433 + L1MC4a LINE L1 5670 5877 -1931 2095 118 3 0 chr11 106498085 106498374 -42285098 + AluSx SINE Alu 5 294 -18 189 0 0 0 chr11 106498681 106498702 -42284770 + (CA)n Simple_repeat Simple_repeat 2 22 0 26 30 0 0 chr11 106498898 106498931 -42284541 + AT_rich Low_complexity Low_complexity 1 33 0 1420 230 114 55 chr11 106499011 106499519 -42283953 - MLT1F1 LTR MaLR -23 570 1 941 301 124 14 chr11 106499959 106500401 -42283071 - L2 LINE L2 -1589 1725 1235 514 253 0 79 chr11 106500474 106500652 -42282820 + LTR33 LTR ERVL 3 166 -355 543 303 75 5 chr11 106500709 106500897 -42282575 + LTR33 LTR ERVL 321 521 0 254 95 24 0 chr11 106502208 106502250 -42281222 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 494 214 0 163 chr11 106502631 106502827 -42280645 + MER3 DNA MER1_type 28 191 -18 2070 117 10 0 chr11 106502885 106503183 -42280289 - AluY SINE Alu -10 301 1 324 351 84 10 chr11 106503407 106503609 -42279863 - L2 LINE L2 -499 2815 2599 2110 128 0 3 chr11 106503637 106503950 -42279522 + AluSx SINE Alu 1 312 0 244 271 38 45 chr11 106504288 106504421 -42279051 - MLT1K LTR MaLR -27 561 430 216 0 0 0 chr11 106504463 106504487 -42278985 + (A)n Simple_repeat Simple_repeat 1 24 0 2083 140 0 7 chr11 106505060 106505367 -42278105 + AluSx SINE Alu 8 312 0 438 264 13 6 chr11 106505853 106506012 -42277460 + (TA)n Simple_repeat Simple_repeat 2 161 0 2354 97 0 0 chr11 106506454 106506754 -42276718 - AluSg SINE Alu -10 300 1 452 170 54 18 chr11 106507163 106507275 -42276197 + MER4C LTR ERV1 1 116 -349 1262 220 65 95 chr11 106507357 106507852 -42275620 + LTR34 LTR ERV1 136 695 -4 1584 149 142 0 chr11 106507876 106508171 -42275301 + MER1B DNA MER1_type 1 337 0 529 70 14 0 chr11 106508343 106508414 -42275058 + MADE1 DNA Mariner 1 72 -8 1787 209 5 30 chr11 106508461 106508834 -42274638 - MER93b LTR ERV1 0 373 10 2344 110 0 0 chr11 106509245 106509555 -42273917 + AluSg SINE Alu 1 310 0 24 32 0 0 chr11 106510078 106510109 -42273363 + AT_rich Low_complexity Low_complexity 1 31 0 281 248 38 57 chr11 106510282 106510387 -42273085 - MIR SINE MIR -68 140 38 2119 114 0 3 chr11 106510543 106510841 -42272631 - AluSx SINE Alu -10 302 6 296 47 0 23 chr11 106512175 106512218 -42271254 + (CA)n Simple_repeat Simple_repeat 1 42 0 21 0 0 0 chr11 106512421 106512442 -42271030 + AT_rich Low_complexity Low_complexity 1 21 0 198 71 0 0 chr11 106512844 106512872 -42270600 + (TTG)n Simple_repeat Simple_repeat 1 28 0 1136 61 27 20 chr11 106513573 106513721 -42269751 + AluY SINE Alu 2 150 -161 10001 63 4 3 chr11 106513721 106514985 -42268487 + LTR10A-int LTR ERV1 2532 3796 -3100 3578 236 28 25 chr11 106515458 106516361 -42267111 + LTR10A-int LTR ERV1 5741 6645 -4 1842 191 113 47 chr11 106516364 106516878 -42266594 + LTR10A LTR ERV1 1 548 -61 1444 314 60 12 chr11 106516901 106517541 -42265931 + HERV16 LTR ERVL 1669 2378 -2765 7098 61 9 3 chr11 106517545 106518639 -42264833 - L1PA8 LINE L1 -5 6167 5076 300 53 0 0 chr11 106518777 106518815 -42264657 + (A)n Simple_repeat Simple_repeat 1 38 0 572 367 73 31 chr11 106518823 106519300 -42264172 + HERV16 LTR ERVL 2587 3083 -1913 976 306 106 13 chr11 106519343 106519722 -42263750 - MER69 DNA AcHobo -2112 414 1 609 362 58 13 chr11 106521186 106521567 -42261905 + LTR16A LTR ERVL 19 416 -34 1647 95 0 41 chr11 106521743 106521985 -42261487 + AluSx SINE Alu 1 232 -80 237 229 0 105 chr11 106523143 106523248 -42260224 + MIR SINE MIR 113 206 -56 2112 115 3 3 chr11 106524051 106524346 -42259126 + AluSg SINE Alu 1 295 -15 21 0 0 0 chr11 106524413 106524434 -42259038 + AT_rich Low_complexity Low_complexity 1 21 0 1228 113 92 0 chr11 106524457 106524652 -42258820 - L1PA10 LINE L1 -4 6164 5952 25 31 0 0 chr11 106525319 106525351 -42258121 + AT_rich Low_complexity Low_complexity 1 32 0 314 259 89 36 chr11 106525417 106525529 -42257943 - L1M4 LINE L1 -1998 4646 4529 418 136 0 23 chr11 106525546 106525634 -42257838 + (TA)n Simple_repeat Simple_repeat 1 86 0 715 312 28 8 chr11 106525937 106526187 -42257285 + MIR SINE MIR 2 256 -6 344 254 76 25 chr11 106526733 106526851 -42256621 + MIR SINE MIR 114 237 -25 238 292 14 14 chr11 106527333 106527344 -42256128 - L1MA10 LINE L1 -68 6266 6256 1106 247 20 52 chr11 106527344 106527745 -42255727 - L1ME2 LINE L1 -71 6093 5706 620 138 0 9 chr11 106527760 106527869 -42255603 + L1P LINE L1 2419 2526 -3620 * 2136 222 99 18 chr11 106527868 106528666 -42254806 - L1M4 LINE L1 -4855 1791 922 1119 121 75 147 chr11 106528667 106528974 -42254498 + LTR12 LTR ERV1 1 285 -429 260 214 45 22 chr11 106528975 106529064 -42254408 + LTR30 LTR ERV1 553 643 -79 722 120 0 0 chr11 106529066 106529166 -42254306 + LTR12 LTR ERV1 615 714 0 1045 281 41 25 chr11 106529166 106529723 -42253749 - L1M4 LINE L1 -5618 924 274 982 106 0 0 chr11 106529746 106529878 -42253594 - AluSq/x SINE Alu -180 132 1 22 80 0 0 chr11 106530164 106530214 -42253258 + AT_rich Low_complexity Low_complexity 1 50 0 355 393 32 14 chr11 106531024 106531243 -42252229 + MER115 DNA AcHobo 126 348 -345 562 289 6 6 chr11 106531289 106531462 -42252010 + MER115 DNA AcHobo 521 693 0 386 285 62 8 chr11 106531495 106531625 -42251847 - L2 LINE L2 0 3313 3177 264 289 133 19 chr11 106531626 106531837 -42251635 + L1MC/D LINE L1 5580 5814 -1994 216 184 0 0 chr11 106532518 106532567 -42250905 + CT-rich Low_complexity Low_complexity 2 50 0 3167 158 32 2 chr11 106533178 106533741 -42249731 + L1PA16 LINE L1 5580 6159 -7 213 39 0 0 chr11 106533809 106533835 -42249637 + (TAAAA)n Simple_repeat Simple_repeat 3 28 0 294 344 19 44 chr11 106535030 106535190 -42248282 - L3 LINE CR1 -31 1546 1391 31 88 0 0 chr11 106536263 106536343 -42247129 + AT_rich Low_complexity Low_complexity 1 80 0 1612 163 45 45 chr11 106537247 106537622 -42245850 - THE1C LTR MaLR 0 375 1 6355 152 78 14 chr11 106537622 106538836 -42244636 - THE1C-int LTR MaLR 0 1580 363 637 184 0 26 chr11 106538837 106538951 -42244521 - THE1C LTR MaLR -264 111 1 4447 172 59 0 chr11 106540938 106541782 -42241690 - Tigger3b DNA MER2_type -1 1230 337 229 257 27 0 chr11 106541783 106541857 -42241615 + (TA)n Simple_repeat Simple_repeat 2 77 0 453 169 39 0 chr11 106541858 106541935 -42241537 - Tigger3b DNA MER2_type -1142 89 10 183 114 0 0 chr11 106541948 106541983 -42241489 + (TA)n Simple_repeat Simple_repeat 1 35 0 1377 170 111 42 chr11 106541992 106542298 -42241174 - Tigger3b DNA MER2_type -903 328 2 252 247 14 27 chr11 106542299 106542372 -42241100 + (TATATG)n Simple_repeat Simple_repeat 3 74 0 1903 213 12 27 chr11 106542674 106542734 -42240738 - MER57A LTR ERV1 0 403 344 2186 137 28 17 chr11 106542734 106543092 -42240380 + THE1B LTR MaLR 3 364 0 11535 95 2 4 chr11 106543092 106544676 -42238796 + THE1B-int LTR MaLR 1 1580 0 2175 140 36 17 chr11 106544676 106545033 -42238439 + THE1B LTR MaLR 1 364 0 1903 213 12 27 chr11 106545033 106545379 -42238093 - MER57A LTR ERV1 -56 347 1 707 197 7 14 chr11 106545379 106545521 -42237951 - MER57A-int LTR ERV1 0 7537 7397 380 137 211 21 chr11 106545521 106545616 -42237856 - LTR54B LTR ERV1 -160 338 226 605 193 34 0 chr11 106545675 106545794 -42237678 - LTR54 LTR ERV1 -387 123 1 3760 125 22 7 chr11 106546197 106546782 -42236690 - MER41B LTR ERV1 -41 594 1 706 134 34 0 chr11 106547029 106547148 -42236324 - FLAM_A SINE Alu 0 142 20 3788 211 49 18 chr11 106547162 106548660 -42234812 - L1MB8 LINE L1 -5 6173 4633 1092 253 37 69 chr11 106548660 106549346 -42234126 - LTR9 LTR ERV1 0 779 1 1838 250 32 27 chr11 106549379 106550119 -42233353 - L1MB8 LINE L1 -1538 4608 3865 1679 242 70 33 chr11 106550122 106550548 -42232924 - MLT2B1 LTR ERVL 0 520 79 1322 244 136 19 chr11 106550577 106551004 -42232468 - MER50 LTR ERV1 -19 715 239 363 215 25 0 chr11 106551197 106551276 -42232196 - MLT2B1 LTR ERVL -432 83 3 210 186 34 51 chr11 106551315 106551374 -42232098 + L2 LINE L2 2437 2494 -820 3545 121 32 14 chr11 106551477 106552066 -42231406 - MER11A LTR ERVK 0 1266 667 265 56 0 0 chr11 106552065 106552101 -42231371 - MER11A LTR ERVK -905 361 326 * 1413 88 40 4 chr11 106552099 106552358 -42231114 - MER11B LTR ERVK -877 359 1 430 357 45 6 chr11 106552358 106552515 -42230957 + L2 LINE L2 2598 2760 -554 1872 184 148 122 chr11 106554107 106554910 -42228562 + LTR1B LTR ERV1 3 826 0 485 270 51 7 chr11 106554910 106555042 -42228430 + MER45A DNA AcHobo 40 177 -1 441 365 26 17 chr11 106556145 106556378 -42227094 - MIR SINE MIR -16 246 12 2081 117 0 0 chr11 106556635 106556918 -42226554 - AluSc SINE Alu -26 283 1 314 196 82 31 chr11 106557071 106557168 -42226304 - MIR SINE MIR -56 206 105 1461 147 0 4 chr11 106557170 106557402 -42226070 + AluSg/x SINE Alu 75 305 -7 1715 124 10 16 chr11 106557536 106557842 -42225630 - AluY SINE Alu -7 304 1 212 222 37 0 chr11 106559296 106559350 -42224122 - MIR SINE MIR -32 230 175 278 277 196 7 chr11 106559386 106559534 -42223938 + MLT1I LTR MaLR 19 194 -215 243 289 21 41 chr11 106559612 106559709 -42223763 + MLT1J2 LTR MaLR 313 407 -43 182 313 353 4 chr11 106559785 106560060 -42223412 - L2 LINE L2 -1081 2233 1863 22 0 0 0 chr11 106560064 106560086 -42223386 + AT_rich Low_complexity Low_complexity 1 22 0 1653 83 25 21 chr11 106560183 106560424 -42223048 - THE1A LTR MaLR 0 355 114 11691 33 0 0 chr11 106560424 106561834 -42221638 - L1PA2 LINE L1 -1507 4639 3230 7592 21 6 0 chr11 106561834 106563347 -42220125 + L1PA2 LINE L1 4637 6155 0 945 69 8 8 chr11 106563350 106563480 -42219992 - THE1A LTR MaLR -225 130 1 23 0 0 0 chr11 106564400 106564423 -42219049 + AT_rich Low_complexity Low_complexity 1 23 0 183 42 0 0 chr11 106565196 106565220 -42218252 + (TA)n Simple_repeat Simple_repeat 1 24 0 2757 249 55 0 chr11 106565413 106566036 -42217436 + L1MB8 LINE L1 384 1040 -5819 877 185 75 6 chr11 106566059 106566232 -42217240 - LTR51 LTR ERV1 0 671 487 * 1071 218 181 3 chr11 106566230 106566304 -42217168 - LTR51 LTR ERV1 -326 345 285 183 42 0 0 chr11 106566304 106566328 -42217144 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 1071 218 181 3 chr11 106566328 106566546 -42216926 - LTR51 LTR ERV1 -386 285 1 559 252 35 0 chr11 106566549 106566692 -42216780 + L1MB8 LINE L1 1040 1187 -5672 1158 257 161 19 chr11 106566738 106567246 -42216226 + L1MB8 LINE L1 3112 3546 -3411 2241 144 11 11 chr11 106567246 106567621 -42215851 + THE1C LTR MaLR 1 375 0 9839 115 50 4 chr11 106567621 106569132 -42214340 + THE1C-int LTR MaLR 1 1580 0 2381 130 8 13 chr11 106569132 106569509 -42213963 + THE1C LTR MaLR 1 375 0 1158 257 161 19 chr11 106569509 106569810 -42213662 + L1MB8 LINE L1 3545 4039 -2918 2745 161 22 18 chr11 106569883 106570379 -42213093 - MER41E LTR ERV1 0 512 15 602 259 45 34 chr11 106570503 106570881 -42212591 + L1MB8 LINE L1 4151 4501 -2456 1323 226 38 62 chr11 106570908 106571408 -42212064 + L1MB8 LINE L1 6263 6750 -239 * 4730 263 57 34 chr11 106571405 106573867 -42209605 - L1 LINE L1 -2442 3592 1187 207 0 0 0 chr11 106573867 106573890 -42209582 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1816 118 30 19 chr11 106573898 106574169 -42209303 - AluSg SINE Alu -36 274 1 4730 263 57 34 chr11 106574169 106575030 -42208442 - L1 LINE L1 -4853 1181 480 1278 220 33 9 chr11 106575053 106575390 -42208082 - L1MB1 LINE L1 -1314 4832 4488 3498 205 41 44 chr11 106575397 106576674 -42206798 + L1MB1 LINE L1 4865 6138 -30 2390 47 3 13 chr11 106576674 106576972 -42206500 - AluY SINE Alu -16 295 1 3498 205 41 44 chr11 106576972 106577003 -42206469 + L1MB1 LINE L1 6138 6168 0 715 268 80 4 chr11 106577005 106577281 -42206191 + L1M4 LINE L1 2478 2774 -3372 2074 119 0 3 chr11 106577595 106577889 -42205583 + AluSx SINE Alu 4 296 -16 3195 156 95 44 chr11 106578534 106579167 -42204305 + L1PA7 LINE L1 5480 6144 -10 206 216 0 0 chr11 106580053 106580104 -42203368 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 1135 258 48 40 chr11 106580106 106580586 -42202886 + L1MC4 LINE L1 6820 7303 -739 180 77 0 0 chr11 106580591 106580617 -42202855 + (TAA)n Simple_repeat Simple_repeat 1 26 0 236 375 11 11 chr11 106580795 106580883 -42202589 - MIR SINE MIR -166 96 9 238 195 103 46 chr11 106581411 106581498 -42201974 - L2 LINE L2 -7 3306 3215 5218 111 61 18 chr11 106582413 106582815 -42200657 + L1PA11 LINE L1 5061 5444 -730 2143 117 3 0 chr11 106582815 106583123 -42200349 + AluY SINE Alu 1 309 -2 5218 111 61 18 chr11 106583123 106583267 -42200205 + L1PA11 LINE L1 5444 5580 -594 2348 138 19 8 chr11 106583267 106583638 -42199834 + THE1C LTR MaLR 1 375 0 5218 111 61 18 chr11 106583638 106584163 -42199309 + L1PA11 LINE L1 5580 6172 -2 38 0 0 0 chr11 106585421 106585459 -42198013 + AT_rich Low_complexity Low_complexity 1 38 0 26 50 0 0 chr11 106585660 106585700 -42197772 + AT_rich Low_complexity Low_complexity 1 40 0 553 386 50 18 chr11 106586495 106586935 -42196537 + L1MA4 LINE L1 1 454 -5827 892 261 56 29 chr11 106587447 106587861 -42195611 + L1MA4 LINE L1 1120 1544 -4737 * 11133 202 47 34 chr11 106587851 106592045 -42191427 + L1MA4 LINE L1 2306 6504 0 201 298 18 0 chr11 106592439 106592496 -42190976 + CT-rich Low_complexity Low_complexity 3 60 0 398 328 98 16 chr11 106592499 106592755 -42190717 - L2 LINE L2 -1 3312 3036 4223 143 132 0 chr11 106592916 106593646 -42189826 + LTR12 LTR ERV1 1 826 0 200 341 127 8 chr11 106593646 106593772 -42189700 - L2 LINE L2 -457 2857 2717 31 44 0 0 chr11 106593821 106593866 -42189606 + AT_rich Low_complexity Low_complexity 1 45 0 210 71 0 0 chr11 106594049 106594077 -42189395 + (T)n Simple_repeat Simple_repeat 1 28 0 201 229 0 0 chr11 106594077 106594125 -42189347 + G-rich Low_complexity Low_complexity 1 48 0 1387 83 0 0 chr11 106594297 106594478 -42188994 - AluY SINE Alu 0 311 131 2158 72 3 10 chr11 106595181 106595471 -42188001 + AluY SINE Alu 1 288 -23 180 0 0 0 chr11 106595756 106595776 -42187696 + (TG)n Simple_repeat Simple_repeat 2 21 0 5248 88 101 0 chr11 106596347 106597097 -42186375 - LTR12 LTR ERV1 0 826 1 4255 161 17 43 chr11 106598091 106598452 -42185020 - L1PA16 LINE L1 -1 6165 5796 2405 80 3 3 chr11 106598452 106598765 -42184707 - AluSp SINE Alu 0 313 1 4255 161 17 43 chr11 106598765 106599227 -42184245 - L1PA16 LINE L1 -370 5796 5333 2097 122 0 13 chr11 106599227 106599531 -42183941 - AluSx SINE Alu -12 300 1 4255 161 17 43 chr11 106599531 106599750 -42183722 - L1PA16 LINE L1 -833 5333 5110 698 317 136 28 chr11 106599897 106600576 -42182896 - HAL1 LINE L1 -258 2249 1498 27 0 0 0 chr11 106600881 106600908 -42182564 + AT_rich Low_complexity Low_complexity 1 27 0 460 115 13 0 chr11 106600967 106601045 -42182427 + FLAM_C SINE Alu 64 142 -1 180 0 0 0 chr11 106601256 106601276 -42182196 + (A)n Simple_repeat Simple_repeat 1 20 0 531 234 18 0 chr11 106601287 106601398 -42182074 - FLAM_A SINE Alu -26 116 4 397 341 14 54 chr11 106601956 106602179 -42181293 - HAL1 LINE L1 -2171 336 123 1935 198 51 32 chr11 106602735 106603209 -42180263 + MER66B LTR ERV1 4 486 0 652 226 7 0 chr11 106603217 106603354 -42180118 - MER3 DNA MER1_type -61 148 11 236 155 0 35 chr11 106603558 106603616 -42179856 + (CATA)n Simple_repeat Simple_repeat 3 58 0 204 205 0 0 chr11 106603659 106603698 -42179774 + GA-rich Low_complexity Low_complexity 1 39 0 309 271 193 18 chr11 106604637 106604917 -42178555 + HAL1b LINE L1 435 763 -585 516 310 32 0 chr11 106604959 106605114 -42178358 - MIR SINE MIR -96 166 7 326 243 149 50 chr11 106605114 106605336 -42178136 + HAL1b LINE L1 755 998 -350 29 78 0 0 chr11 106605385 106605449 -42178023 + AT_rich Low_complexity Low_complexity 1 64 0 34 24 0 0 chr11 106605596 106605637 -42177835 + AT_rich Low_complexity Low_complexity 1 41 0 577 325 60 32 chr11 106606184 106606433 -42177039 - MIR SINE MIR -5 257 2 183 315 98 33 chr11 106608392 106608484 -42174988 + MIR SINE MIR 31 128 -134 628 219 152 68 chr11 106608487 106608784 -42174688 + MSTD LTR MaLR 1 396 0 376 307 24 8 chr11 106608787 106608914 -42174558 + MIR SINE MIR 134 262 0 21 0 0 0 chr11 106610439 106610460 -42173012 + AT_rich Low_complexity Low_complexity 1 21 0 251 291 215 17 chr11 106610740 106610793 -42172679 + MIR SINE MIR 53 94 -168 2524 42 0 10 chr11 106610793 106611100 -42172372 - AluY SINE Alu -7 304 1 251 291 215 17 chr11 106611100 106611218 -42172254 + MIR SINE MIR 94 258 -4 1713 112 8 0 chr11 106614299 106614550 -42168922 + AluSx SINE Alu 45 297 -15 23 0 0 0 chr11 106615046 106615069 -42168403 + AT_rich Low_complexity Low_complexity 1 23 0 24 67 0 0 chr11 106615183 106615228 -42168244 + AT_rich Low_complexity Low_complexity 1 45 0 24 32 0 0 chr11 106615309 106615340 -42168132 + AT_rich Low_complexity Low_complexity 1 31 0 805 58 10 0 chr11 106615892 106615996 -42167476 + AluSg SINE Alu 5 109 -201 326 78 0 20 chr11 106616028 106616079 -42167393 + (GAAA)n Simple_repeat Simple_repeat 3 52 0 257 245 82 17 chr11 106616636 106616820 -42166652 + L1MEd LINE L1 954 1145 -4974 324 250 45 36 chr11 106616902 106617014 -42166458 + L1MCc LINE L1 282 394 -6029 1197 280 15 9 chr11 106617043 106617372 -42166100 + L1MD3 LINE L1 7331 7661 -334 213 159 0 23 chr11 106617526 106617570 -42165902 + (TA)n Simple_repeat Simple_repeat 2 44 0 231 203 188 0 chr11 106617752 106617816 -42165656 + L1ME3 LINE L1 6082 6157 -5 24 32 0 0 chr11 106618372 106618403 -42165069 + AT_rich Low_complexity Low_complexity 1 31 0 627 225 21 129 chr11 106618597 106618741 -42164731 + L1MC/D LINE L1 5337 5495 -2313 1899 116 7 10 chr11 106618741 106619042 -42164430 + AluSg SINE Alu 1 300 -10 627 225 21 129 chr11 106619042 106619055 -42164417 + L1MC/D LINE L1 5495 5508 -2300 2408 77 0 0 chr11 106619055 106619365 -42164107 + AluY SINE Alu 1 310 -1 627 225 21 129 chr11 106619365 106619493 -42163979 + L1MC/D LINE L1 5508 5587 -2221 2000 121 7 3 chr11 106619493 106619791 -42163681 - AluSq SINE Alu -10 303 5 627 225 21 129 chr11 106619791 106619828 -42163644 + L1MC/D LINE L1 5587 5626 -2182 2050 119 23 3 chr11 106619999 106620301 -42163171 - AluSx SINE Alu -2 310 3 250 235 29 0 chr11 106620573 106620641 -42162831 + MLT1J1 LTR MaLR 358 427 -19 33 0 0 0 chr11 106620734 106620767 -42162705 + AT_rich Low_complexity Low_complexity 1 33 0 232 385 29 0 chr11 106620950 106621054 -42162418 + L2 LINE L2 2927 3033 -239 25 31 0 0 chr11 106622618 106622650 -42160822 + AT_rich Low_complexity Low_complexity 1 32 0 195 242 0 0 chr11 106623372 106623434 -42160038 + (TA)n Simple_repeat Simple_repeat 1 62 0 228 216 0 0 chr11 106624305 106624356 -42159116 + (TA)n Simple_repeat Simple_repeat 2 52 0 653 274 16 16 chr11 106624791 106624977 -42158495 + MER5A DNA MER1_type 1 186 -3 2159 88 3 14 chr11 106625211 106625508 -42157964 + AluSc SINE Alu 1 294 -15 621 184 7 7 chr11 106625848 106625984 -42157488 - L1MB8 LINE L1 0 6989 6854 690 101 37 0 chr11 106626044 106626153 -42157319 + MLT2A2 LTR ERVL 1 113 -340 656 137 51 0 chr11 106626147 106626264 -42157208 + MLT2A2 LTR ERVL 331 453 0 * 1192 215 121 1 chr11 106626265 106626588 -42156884 - L1MB8 LINE L1 -179 6810 6454 776 263 190 0 chr11 106626640 106627093 -42156379 - L1MB8 LINE L1 -2889 4068 3530 572 238 8 0 chr11 106627110 106627236 -42156236 - Alu SINE Alu -9 302 176 410 71 71 0 chr11 106627318 106627388 -42156084 + MLT2A2 LTR ERVL 1 75 -378 782 209 6 6 chr11 106627388 106627546 -42155926 - AluJo SINE Alu -154 158 1 1022 273 51 38 chr11 106627560 106628352 -42155120 - L1MB8 LINE L1 -3460 3497 2732 1940 97 3 88 chr11 106628464 106628793 -42154679 - AluSx SINE Alu -11 301 1 2272 148 14 54 chr11 106629184 106629630 -42153842 + MSTA LTR MaLR 1 428 0 3093 234 83 31 chr11 106629668 106631180 -42152292 - L1MB8 LINE L1 -4639 2320 726 308 387 43 21 chr11 106631321 106631600 -42151872 - L1ME LINE L1 -542 5579 5295 402 288 34 23 chr11 106631835 106632012 -42151460 - L1P LINE L1 -1092 5054 4876 1738 217 6 0 chr11 106632479 106632839 -42150633 - L1PB4 LINE L1 -6 6150 5789 253 100 25 38 chr11 106632848 106632928 -42150544 + (TA)n Simple_repeat Simple_repeat 1 79 0 1026 156 0 6 chr11 106632930 106633103 -42150369 - L1PB4 LINE L1 -365 5791 5620 * 1211 100 13 78 chr11 106633101 106633331 -42150141 + L1PB4 LINE L1 5411 5625 -531 2260 104 0 0 chr11 106633342 106633639 -42149833 - AluSc SINE Alu -12 297 1 496 252 83 64 chr11 106633875 106634141 -42149331 - L2 LINE L2 -49 3264 2994 285 246 0 0 chr11 106634171 106634236 -42149236 - L1ME LINE L1 -413 5749 5685 889 202 43 45 chr11 106634257 106634542 -42148930 - L1M3 LINE L1 -608 5575 5296 294 219 156 25 chr11 106635135 106635366 -42148106 - L1MB8 LINE L1 -230 5948 5691 275 200 0 14 chr11 106635929 106635999 -42147473 + (TA)n Simple_repeat Simple_repeat 2 70 0 251 222 0 14 chr11 106636145 106636217 -42147255 + (TA)n Simple_repeat Simple_repeat 2 72 0 547 340 18 4 chr11 106636234 106636513 -42146959 - L1MB8 LINE L1 -513 5649 5367 241 269 0 51 chr11 106636736 106636814 -42146658 + T-rich Low_complexity Low_complexity 2 75 0 757 229 55 96 chr11 106636886 106637284 -42146188 - L1MB8 LINE L1 -1303 4843 4462 350 309 51 34 chr11 106637439 106637614 -42145858 - L1MB8 LINE L1 -1711 4435 4258 234 191 0 0 chr11 106637969 106638016 -42145456 + (TA)n Simple_repeat Simple_repeat 2 48 0 682 201 21 0 chr11 106638020 106638164 -42145308 - L1PA15 LINE L1 -2 6163 6017 274 128 4 6 chr11 106640507 106640758 -42142714 + AluSx SINE Alu 1 299 -3 211 137 20 20 chr11 106640762 106640813 -42142659 + GA-rich Low_complexity Low_complexity 2 52 0 554 269 27 119 chr11 106641114 106641492 -42141980 + MLT1G1 LTR MaLR 13 399 -196 228 111 0 0 chr11 106641700 106641736 -42141736 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 426 273 101 112 chr11 106642294 106642405 -42141067 + MLT1F LTR MaLR 73 184 -358 2189 111 0 3 chr11 106642405 106642702 -42140770 - AluSq SINE Alu -17 296 1 426 273 101 112 chr11 106642702 106642942 -42140530 + MLT1F LTR MaLR 184 351 -191 399 283 8 17 chr11 106642960 106643080 -42140392 + MLT1F LTR MaLR 477 595 0 249 222 0 0 chr11 106643649 106643712 -42139760 + (TATATG)n Simple_repeat Simple_repeat 2 64 0 563 222 146 22 chr11 106643744 106643929 -42139543 + MIR SINE MIR 5 212 -50 201 213 0 53 chr11 106643942 106644017 -42139455 + A-rich Low_complexity Low_complexity 2 72 0 250 211 18 0 chr11 106644243 106644300 -42139172 - MLT1H1 LTR MaLR 0 555 498 2075 130 7 0 chr11 106644305 106644605 -42138867 + AluSx SINE Alu 1 302 -10 402 21 0 0 chr11 106645933 106645980 -42137492 + (TG)n Simple_repeat Simple_repeat 2 48 0 272 245 86 53 chr11 106646163 106646314 -42137158 + L2 LINE L2 3158 3313 0 180 0 0 0 chr11 106647049 106647069 -42136403 + (TA)n Simple_repeat Simple_repeat 2 21 0 998 209 7 46 chr11 106647069 106647376 -42136096 - AluSx SINE Alu -7 295 1 21 0 0 0 chr11 106648283 106648304 -42135168 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr11 106648599 106648624 -42134848 + AT_rich Low_complexity Low_complexity 1 25 0 1685 179 122 16 chr11 106750136 106750522 -42032950 - MSTA LTR MaLR -1 427 1 9114 156 9 27 chr11 106750522 106752129 -42031343 - MSTA-int LTR MaLR 0 1580 3 1382 161 157 13 chr11 106752131 106752436 -42031036 - MSTA LTR MaLR 0 428 80 2003 153 25 30 chr11 106752436 106752802 -42030670 + THE1B LTR MaLR 1 364 0 10375 120 24 3 chr11 106752802 106754349 -42029123 + THE1B-int LTR MaLR 1 1580 0 1747 128 6 56 chr11 106754349 106754686 -42028786 + THE1B LTR MaLR 1 320 -44 315 314 38 13 chr11 106755386 106755545 -42027927 - MIR SINE MIR -3 259 97 273 280 0 0 chr11 106755614 106755707 -42027765 + MER69 DNA AcHobo 2426 2518 -8 1866 199 14 6 chr11 106755758 106756120 -42027352 - MLT1A1 LTR MaLR 0 365 1 209 281 134 12 chr11 106756330 106756412 -42027060 - L2 LINE L2 -224 3048 2957 315 0 0 0 chr11 106756753 106756788 -42026684 + (TG)n Simple_repeat Simple_repeat 1 35 0 269 298 0 32 chr11 106757193 106757287 -42026185 + MER20 DNA MER1_type 1 91 -128 653 256 154 0 chr11 106757300 106757495 -42025977 + MLT1F LTR MaLR 180 404 -138 21 36 0 0 chr11 106757754 106757782 -42025690 + AT_rich Low_complexity Low_complexity 1 28 0 12444 34 4 1 chr11 106758078 106759674 -42023798 - L1PA3 LINE L1 -1909 4237 2637 9117 43 8 0 chr11 106759674 106761561 -42021911 + L1PA3 LINE L1 4249 6142 -13 2966 26 3 0 chr11 106761214 106761561 -42021911 + L1PA3 LINE L1 5795 6171 0 222 0 35 0 chr11 106761561 106761590 -42021882 + (TAAA)n Simple_repeat Simple_repeat 3 144 0 2325 108 0 0 chr11 106761597 106761893 -42021579 + AluSq SINE Alu 1 296 -17 207 0 0 0 chr11 106763322 106763345 -42020127 + (A)n Simple_repeat Simple_repeat 1 23 0 2054 95 0 21 chr11 106763473 106763758 -42019714 + AluY SINE Alu 1 279 -32 387 0 0 0 chr11 106763763 106763806 -42019666 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 4136 280 32 21 chr11 106763817 106764964 -42018508 + L1P LINE L1 1971 3141 -3005 1488 216 0 7 chr11 106764964 106765261 -42018211 + AluJo SINE Alu 2 296 -16 4136 280 32 21 chr11 106765261 106765726 -42017746 + L1P LINE L1 3141 3600 -2546 551 209 123 8 chr11 106766161 106766429 -42017043 - MSTB1-int LTR MaLR -1352 299 1 1305 183 65 14 chr11 106766430 106766712 -42016760 - MSTB1 LTR MaLR -7 421 126 745 184 27 34 chr11 106766705 106766925 -42016547 - MSTB1 LTR MaLR -214 212 1 * 6814 67 6 11 chr11 106767174 106768889 -42014583 + L1PA7 LINE L1 4444 6154 0 22 88 0 0 chr11 106769028 106769085 -42014387 + AT_rich Low_complexity Low_complexity 1 57 0 284 304 29 10 chr11 106769452 106769554 -42013918 + L1MC2 LINE L1 6229 6332 -12 294 288 89 10 chr11 106769586 106769878 -42013594 + L1M4 LINE L1 2848 3162 -2984 22 94 0 0 chr11 106769889 106769953 -42013519 + AT_rich Low_complexity Low_complexity 1 64 0 2288 93 0 3 chr11 106770064 106770366 -42013106 - AluY SINE Alu -8 303 3 246 116 0 0 chr11 106770378 106770421 -42013051 + (TG)n Simple_repeat Simple_repeat 2 44 0 336 289 0 0 chr11 106770435 106770525 -42012947 - L1MC4 LINE L1 -1339 6703 6614 1318 197 107 57 chr11 106772519 106772885 -42010587 + MSTD LTR MaLR 5 388 -8 398 327 172 42 chr11 106772917 106773486 -42009986 + L2 LINE L2 2004 2646 -668 709 267 127 18 chr11 106776705 106776926 -42006546 - MLT1E2 LTR MaLR 0 626 382 524 217 22 13 chr11 106776987 106777212 -42006260 + CT-rich Low_complexity Low_complexity 1 227 0 381 88 0 59 chr11 106777215 106777283 -42006189 - L1M4 LINE L1 -1198 4948 4885 1386 276 52 21 chr11 106777284 106777806 -42005666 - L1MDb LINE L1 -5203 1340 803 263 357 23 47 chr11 106777917 106778046 -42005426 - L1MDb LINE L1 -6120 423 298 2048 175 24 56 chr11 106778341 106778809 -42004663 - LTR1 LTR ERV1 0 785 333 4446 142 70 23 chr11 106779352 106780210 -42003262 + Tigger3b DNA MER2_type 334 1231 0 1639 205 3 3 chr11 106780336 106780648 -42002824 + AluJb SINE Alu 1 312 0 2034 119 17 13 chr11 106780659 106780961 -42002511 + AluSx SINE Alu 1 303 -9 1487 158 16 43 chr11 106781189 106781493 -42001979 - LTR1 LTR ERV1 -489 296 1 204 216 0 0 chr11 106781623 106781660 -42001812 + CT-rich Low_complexity Low_complexity 2 38 0 398 273 45 91 chr11 106781683 106781947 -42001525 - L1MDb LINE L1 -6263 277 26 498 221 108 60 chr11 106782022 106782471 -42001001 - Charlie6 DNA MER1_type -368 3132 2624 381 229 162 22 chr11 106782512 106782691 -42000781 + L1MD3 LINE L1 7770 7973 -22 21 0 0 0 chr11 106783661 106783682 -41999790 + AT_rich Low_complexity Low_complexity 1 21 0 858 229 62 4 chr11 106784295 106784539 -41998933 + L1M4 LINE L1 4678 4935 -1211 2052 117 0 0 chr11 106784541 106784846 -41998626 + AluSx SINE Alu 1 305 0 1402 156 0 12 chr11 106784846 106785089 -41998383 - Tigger4(Zombi) DNA MER2_type -197 2534 2295 199 179 30 0 chr11 106785125 106785192 -41998280 + (TA)n Simple_repeat Simple_repeat 1 69 0 1328 231 59 7 chr11 106785320 106785623 -41997849 + MER70A LTR ERVL 154 472 0 487 310 104 66 chr11 106785629 106785804 -41997668 - L2 LINE L2 -1607 1707 1540 2057 109 21 0 chr11 106785804 106786088 -41997384 - AluSx SINE Alu -10 302 13 487 310 104 66 chr11 106786088 106786335 -41997137 - L2 LINE L2 -1774 1540 1269 25 0 0 0 chr11 106786419 106786444 -41997028 + AT_rich Low_complexity Low_complexity 1 25 0 8989 132 11 19 chr11 106787372 106788966 -41994506 + L1P LINE L1 3028 4609 -1537 3009 216 27 65 chr11 106789475 106790550 -41992922 + L1 LINE L1 4061 5094 -1052 712 251 67 15 chr11 106790674 106790941 -41992531 - L1MEc LINE L1 -2450 3932 3652 726 228 82 31 chr11 106790948 106791376 -41992096 - L1MEc LINE L1 -2870 3512 3073 312 235 70 65 chr11 106791484 106791684 -41991788 - L1MEc LINE L1 -4444 1970 1738 486 161 37 0 chr11 106791689 106791770 -41991702 + THE1-int LTR MaLR 827 910 -670 * 643 263 53 63 chr11 106791750 106792146 -41991326 - L1MEc LINE L1 -4712 1672 1281 266 240 41 8 chr11 106792803 106792915 -41990557 + (TA)n Simple_repeat Simple_repeat 2 120 -6 357 24 0 0 chr11 106792915 106792957 -41990515 + (TG)n Simple_repeat Simple_repeat 2 43 0 266 240 41 8 chr11 106792957 106792965 -41990507 + (TA)n Simple_repeat Simple_repeat 120 126 0 670 140 10 10 chr11 106792969 106793087 -41990385 + MLT1B LTR MaLR 236 352 -22 1790 192 16 29 chr11 106793148 106793534 -41989938 + MLT1B LTR MaLR 1 381 -9 676 140 0 97 chr11 106793859 106794045 -41989427 - AluY SINE Alu -30 281 114 266 50 25 0 chr11 106794862 106794902 -41988570 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 3618 112 13 13 chr11 106795414 106795968 -41987504 - MER41A LTR ERV1 0 554 1 1748 199 39 6 chr11 106796518 106796855 -41986617 + MLT1A1 LTR MaLR 1 348 -17 216 358 37 0 chr11 106797096 106797177 -41986295 - L2 LINE L2 -4 3268 3185 26 0 0 0 chr11 106798018 106798044 -41985428 + AT_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr11 106798085 106798116 -41985356 + AT_rich Low_complexity Low_complexity 1 31 0 1684 301 60 11 chr11 106798417 106798986 -41984486 - MER69 DNA AcHobo -1929 597 1 2230 94 0 3 chr11 106799208 106799505 -41983967 - AluSc SINE Alu -13 296 1 1668 207 129 5 chr11 106801142 106801552 -41981920 - LOR1b LTR ERV1 0 461 1 22 0 0 0 chr11 106802534 106802556 -41980916 + AT_rich Low_complexity Low_complexity 1 22 0 2438 280 74 3 chr11 106802979 106803850 -41979622 + L1MD2 LINE L1 5207 6136 -223 4198 95 5 20 chr11 106804432 106805045 -41978427 + L1PA8A LINE L1 5406 6009 -122 24 0 0 0 chr11 106805224 106805248 -41978224 + AT_rich Low_complexity Low_complexity 1 24 0 3502 131 19 47 chr11 106805776 106806517 -41976955 + L1M1 LINE L1 4759 5468 -743 246 322 33 0 chr11 106807773 106807863 -41975609 + L2 LINE L2 2730 2822 -492 * 736 205 60 24 chr11 106807853 106808019 -41975453 + MER5A DNA MER1_type 16 187 -2 786 264 57 8 chr11 106808025 106808290 -41975182 + L2 LINE L2 2808 3085 -228 2833 128 138 12 chr11 106808316 106808825 -41974647 - LTR17 LTR ERV1 0 780 208 212 234 16 16 chr11 106808925 106808989 -41974483 + A-rich Low_complexity Low_complexity 1 64 0 240 143 0 0 chr11 106809166 106809208 -41974264 + (A)n Simple_repeat Simple_repeat 1 42 0 368 227 76 34 chr11 106809223 106809342 -41974130 + MER58 DNA MER1_type 2 125 -2295 2397 214 46 97 chr11 106809357 106810254 -41973218 + L1MC4a LINE L1 5420 6270 -1538 189 0 0 0 chr11 106810368 106810389 -41973083 + (A)n Simple_repeat Simple_repeat 1 21 0 315 312 101 14 chr11 106811179 106811317 -41972155 + L1M4c LINE L1 9 158 -7010 22 88 0 0 chr11 106811544 106811601 -41971871 + AT_rich Low_complexity Low_complexity 1 57 0 6788 78 10 1 chr11 106811740 106813438 -41970034 - L1PA7 LINE L1 0 6154 4444 745 184 27 34 chr11 106813687 106813907 -41969565 + MSTB1 LTR MaLR 1 212 -214 * 1301 183 65 14 chr11 106813900 106814182 -41969290 + MSTB1 LTR MaLR 126 421 -7 4036 270 14 4 chr11 106814183 106815326 -41968146 + MSTB1-int LTR MaLR 1 1209 -442 578 270 57 4 chr11 106815337 106815567 -41967905 + L1M4c LINE L1 2760 3001 -4168 342 0 0 0 chr11 106816027 106816065 -41967407 + (TC)n Simple_repeat Simple_repeat 2 39 0 346 125 47 16 chr11 106816065 106816193 -41967279 + (TA)n Simple_repeat Simple_repeat 2 133 0 21 89 0 0 chr11 106816193 106816249 -41967223 + AT_rich Low_complexity Low_complexity 1 56 0 261 388 18 18 chr11 106816749 106816919 -41966553 + L2 LINE L2 2310 2479 -835 432 0 0 0 chr11 106818125 106818173 -41965299 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 255 229 0 0 chr11 106818176 106818237 -41965235 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 3445 269 60 56 chr11 106818327 106818806 -41964666 + L1M4 LINE L1 88 563 -6575 1872 153 49 27 chr11 106818806 106819172 -41964300 - THE1C LTR MaLR 0 375 2 8360 133 79 31 chr11 106819173 106820677 -41962795 - THE1C-int LTR MaLR 0 1580 4 1833 161 65 8 chr11 106820680 106821035 -41962437 - THE1C LTR MaLR 0 375 1 3445 269 60 56 chr11 106821035 106822869 -41960603 + L1M4 LINE L1 564 2545 -4593 5324 246 103 25 chr11 106823047 106825340 -41958132 + L1M4 LINE L1 3648 6118 -839 763 95 26 9 chr11 106825341 106825457 -41958015 + AluSg/x SINE Alu 172 289 -23 798 216 21 46 chr11 106825458 106825675 -41957797 + L1M4 LINE L1 6124 6336 -649 2239 112 3 0 chr11 106825675 106825979 -41957493 + AluSg SINE Alu 1 305 -5 798 216 21 46 chr11 106825979 106826002 -41957470 + L1M4 LINE L1 6336 6358 -627 4344 128 18 7 chr11 106826013 106826746 -41956726 + L1M1 LINE L1 2729 3469 -4096 779 255 43 0 chr11 106826750 106826985 -41956487 - L1 LINE L1 -3532 2614 2370 720 127 0 8 chr11 106827167 106827293 -41956179 + L1MA3 LINE L1 3345 3469 -4096 1589 187 45 34 chr11 106827297 106827848 -41955624 - L1 LINE L1 -3532 4033 3463 1945 100 15 0 chr11 106827864 106828133 -41955339 - AluSp SINE Alu -2 311 39 5149 131 53 66 chr11 106828150 106829364 -41954108 + L1MA3 LINE L1 6274 7554 -170 2134 120 7 0 chr11 106829364 106829656 -41953816 + AluSq SINE Alu 1 294 -19 5149 131 53 66 chr11 106829656 106829825 -41953647 + L1MA3 LINE L1 7554 7724 0 906 315 38 66 chr11 106832016 106832526 -41950946 + L1PA16 LINE L1 788 1278 -6296 2048 103 19 29 chr11 106832526 106832837 -41950635 + AluSx SINE Alu 5 312 0 906 315 38 66 chr11 106832837 106832961 -41950511 + L1PA16 LINE L1 1278 1404 -6170 265 356 0 0 chr11 106833044 106833148 -41950324 + L1PA16 LINE L1 2080 2183 -5398 12759 242 25 25 chr11 106833369 106834580 -41948892 + L1PA16 LINE L1 2182 3392 -4212 2165 75 11 14 chr11 106834580 106834860 -41948612 + AluY SINE Alu 1 279 -32 423 0 0 0 chr11 106834865 106834912 -41948560 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 12759 242 25 25 chr11 106834912 106836068 -41947404 + L1PA16 LINE L1 3396 4551 -3053 1538 208 0 7 chr11 106836068 106836366 -41947106 + AluJo SINE Alu 1 296 -16 12759 242 25 25 chr11 106836366 106838876 -41944596 + L1PA16 LINE L1 4551 7090 -514 2825 171 8 6 chr11 106838947 106839455 -41944017 + L1PA16 LINE L1 7087 7595 -9 25 31 0 0 chr11 106840448 106840480 -41942992 + AT_rich Low_complexity Low_complexity 1 32 0 13903 150 24 4 chr11 106840859 106843229 -41940243 - Tigger1 DNA MER2_type 0 2418 3 6517 96 64 10 chr11 106843344 106844450 -41939022 - MER61A-int LTR ERV1 -2687 2530 1320 3192 186 97 17 chr11 106844443 106845162 -41938310 - MER61A-int LTR ERV1 -4440 777 1 * 1793 154 54 21 chr11 106845162 106845494 -41937978 - MER61A LTR ERV1 0 343 1 8267 119 54 16 chr11 106845497 106846806 -41936666 - MER61A-int LTR ERV1 -3 5214 3856 5575 99 91 124 chr11 106846804 106848396 -41935076 + pTR5 LTR ERV1 741 2438 0 * 1414 75 32 0 chr11 106848399 106848585 -41934887 - MER61A-int LTR ERV1 -1358 3859 3668 2258 101 3 0 chr11 106848585 106848873 -41934599 + AluSp SINE Alu 1 289 -24 780 120 60 54 chr11 106848878 106849045 -41934427 + L1MA2 LINE L1 6137 6304 0 1811 97 91 47 chr11 106850290 106850588 -41932884 - AluSq SINE Alu 0 313 3 25 31 0 0 chr11 106851265 106851297 -41932175 + AT_rich Low_complexity Low_complexity 1 32 0 326 266 8 8 chr11 106852384 106852502 -41930970 + L1MC4 LINE L1 1995 6983 -1339 2317 85 3 3 chr11 106852544 106852851 -41930621 + AluY SINE Alu 1 307 -4 202 196 39 0 chr11 106853013 106853064 -41930408 + (TA)n Simple_repeat Simple_repeat 1 53 0 532 319 69 0 chr11 106853196 106853412 -41930060 - MIR SINE MIR -30 232 2 266 240 41 8 chr11 106853450 106853562 -41929910 + (TA)n Simple_repeat Simple_repeat 2 120 -6 339 25 0 0 chr11 106853562 106853602 -41929870 + (TG)n Simple_repeat Simple_repeat 2 41 0 266 240 41 8 chr11 106853602 106853610 -41929862 + (TA)n Simple_repeat Simple_repeat 120 126 0 670 140 10 10 chr11 106853614 106853732 -41929740 + MLT1B LTR MaLR 236 352 -22 1772 194 16 29 chr11 106853793 106854179 -41929293 + MLT1B LTR MaLR 1 381 -9 1935 116 7 14 chr11 106854504 106854788 -41928684 - AluSx SINE Alu -30 282 1 249 372 16 0 chr11 106855026 106855147 -41928325 - MIR SINE MIR -3 259 137 253 262 36 4 chr11 106855407 106855600 -41927872 + LTR37B LTR ERV1 200 464 -4 2216 87 0 0 chr11 106856451 106856754 -41926718 + AluSc SINE Alu 3 305 0 200 227 0 0 chr11 106857459 106857503 -41925969 + A-rich Low_complexity Low_complexity 1 44 0 180 388 0 24 chr11 106857779 106857864 -41925608 + MIR3 SINE MIR 7 89 -119 * 386 315 0 0 chr11 106857862 106857973 -41925499 - MIR3 SINE MIR -16 192 82 183 331 49 35 chr11 106858478 106858620 -41924852 + L2 LINE L2 1487 1630 -1684 350 21 21 0 chr11 106859074 106859121 -41924351 + (CA)n Simple_repeat Simple_repeat 2 49 0 203 176 0 0 chr11 106859163 106859197 -41924275 + (CATATA)n Simple_repeat Simple_repeat 1 34 0 284 255 21 75 chr11 106859290 106859478 -41923994 + L1ME3 LINE L1 4490 4667 -1479 249 83 0 0 chr11 106859632 106859668 -41923804 + (TG)n Simple_repeat Simple_repeat 1 36 0 21253 105 8 14 chr11 106859994 106866172 -41917300 - L1PA7 LINE L1 -10 6144 11 4719 134 46 77 chr11 106866290 106867280 -41916192 + L1MA2 LINE L1 5207 6159 -145 2007 131 64 22 chr11 106867280 106867640 -41915832 - THE1C LTR MaLR 0 375 1 4719 134 46 77 chr11 106867640 106867782 -41915690 + L1MA2 LINE L1 6159 6304 0 773 309 64 46 chr11 106867813 106868256 -41915216 + L1ME3 LINE L1 5259 5717 -445 1884 105 4 15 chr11 106868256 106868522 -41914950 - AluY SINE Alu -15 296 34 773 309 64 46 chr11 106868522 106868686 -41914786 + L1ME3 LINE L1 5717 5877 -285 400 307 88 0 chr11 106870151 106870343 -41913129 + L1ME LINE L1 5490 5698 -472 785 192 27 0 chr11 106870377 106870523 -41912949 - LOR1a LTR ERV1 0 497 348 5718 142 17 2 chr11 106870537 106871571 -41911901 - L1P LINE L1 -2084 4062 3013 218 227 0 0 chr11 106872136 106872180 -41911292 + A-rich Low_complexity Low_complexity 1 44 0 30 27 0 0 chr11 106872608 106872645 -41910827 + AT_rich Low_complexity Low_complexity 1 37 0 2667 231 28 44 chr11 106873296 106874117 -41909355 - L1MA9 LINE L1 -38 6274 5467 527 171 124 0 chr11 106874124 106874229 -41909243 + AluJb SINE Alu 1 118 -194 1715 178 72 28 chr11 106874229 106874756 -41908716 - MLT2A1 LTR ERVL -4 550 4 1009 198 12 0 chr11 106874756 106874928 -41908544 + AluSg/x SINE Alu 107 280 -32 189 0 0 0 chr11 106874928 106874949 -41908523 + (TAA)n Simple_repeat Simple_repeat 3 23 0 882 171 20 15 chr11 106874955 106875182 -41908290 - L1MA9 LINE L1 -743 5403 5235 4206 210 39 11 chr11 106875183 106876316 -41907156 + L1MA9 LINE L1 4098 5262 -884 1921 140 0 7 chr11 106876852 106877197 -41906275 - AluSq SINE Alu 0 343 1 23 0 0 0 chr11 106877442 106877465 -41906007 + AT_rich Low_complexity Low_complexity 1 23 0 2164 76 48 3 chr11 106877666 106877786 -41905686 + AluY SINE Alu 1 114 -197 254 29 29 0 chr11 106877786 106877821 -41905651 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 2164 76 48 3 chr11 106877821 106877990 -41905482 + AluY SINE Alu 114 303 -8 201 380 51 15 chr11 106879400 106879537 -41903935 + L2 LINE L2 3160 3301 -12 1901 125 0 75 chr11 106879556 106879876 -41903596 - AluSx SINE Alu -16 296 1 224 244 0 0 chr11 106880215 106880260 -41903212 + L3 LINE CR1 1531 1575 -2 1893 125 29 35 chr11 106880599 106880850 -41902622 + LTR28 LTR ERV1 1 251 -769 4403 57 43 30 chr11 106880850 106881450 -41902022 + LTR14B LTR ERVK 1 608 0 1893 125 29 35 chr11 106881450 106881542 -41901930 + LTR28 LTR ERV1 251 342 -678 1160 258 49 94 chr11 106881758 106882164 -41901308 - L1M4 LINE L1 -5264 1278 926 200 33 0 33 chr11 106882164 106882194 -41901278 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1160 258 49 94 chr11 106882194 106882618 -41900854 - L1M4 LINE L1 -5616 926 485 392 308 53 18 chr11 106882901 106883070 -41900402 - L1M4 LINE L1 -6342 200 26 496 253 21 36 chr11 106883101 106883295 -41900177 - L1MEc LINE L1 -4024 2372 2182 724 75 0 0 chr11 106883414 106883508 -41899964 - AluS SINE Alu -219 94 1 201 287 53 53 chr11 106883943 106884037 -41899435 - MIR SINE MIR -63 145 52 186 43 0 0 chr11 106884407 106884430 -41899042 + (A)n Simple_repeat Simple_repeat 1 23 0 796 57 0 0 chr11 106885401 106885506 -41897966 - L1PA5 LINE L1 -1 6153 6049 1218 194 66 28 chr11 106886328 106886616 -41896856 + AluJo SINE Alu 3 301 -1 271 286 54 44 chr11 106889423 106889626 -41893846 + L1ME LINE L1 5622 5826 -336 529 331 91 56 chr11 106889778 106889898 -41893574 - L2 LINE L2 -1477 1837 1723 1931 219 38 50 chr11 106889898 106890374 -41893098 + MER70A LTR ERVL 3 472 0 529 331 91 56 chr11 106890374 106890555 -41892917 - L2 LINE L2 -1591 1723 1550 2046 113 21 0 chr11 106890555 106890838 -41892634 - AluSx SINE Alu -11 301 13 529 331 91 56 chr11 106890838 106891085 -41892387 - L2 LINE L2 -1764 1550 1269 25 0 0 0 chr11 106891169 106891194 -41892278 + AT_rich Low_complexity Low_complexity 1 25 0 2263 105 0 0 chr11 106891586 106891881 -41891591 - AluSc SINE Alu -14 295 1 216 0 0 0 chr11 106892008 106892032 -41891440 + (T)n Simple_repeat Simple_repeat 1 24 0 6580 89 3 0 chr11 106893138 106894274 -41889198 + L1PA8 LINE L1 5024 6162 -10 1938 139 7 0 chr11 106894522 106894810 -41888662 - AluSx SINE Alu -22 290 1 902 229 68 56 chr11 106894946 106895286 -41888186 - MER2 DNA MER2_type 0 344 1 231 192 19 0 chr11 106895410 106895462 -41888010 - Charlie1a DNA MER1_type -9 1446 1394 30384 122 21 16 chr11 106895481 106901567 -41881905 + L1PA7 LINE L1 38 6150 -4 32 26 0 0 chr11 106901647 106901686 -41881786 + AT_rich Low_complexity Low_complexity 1 39 0 2246 64 0 0 chr11 106901774 106902098 -41881374 - AluY SINE Alu 0 324 1 306 226 65 0 chr11 106902119 106902243 -41881229 - HAL1 LINE L1 -111 2396 2265 970 272 82 36 chr11 106902273 106902909 -41880563 - HAL1 LINE L1 -334 2173 1509 330 250 45 0 chr11 106902929 106903041 -41880431 - L1MD3 LINE L1 -8 7987 7871 340 211 39 78 chr11 106903088 106903216 -41880256 - HAL1 LINE L1 -1045 1462 1340 1275 179 33 46 chr11 106903401 106903703 -41879769 - AluJo SINE Alu -14 298 1 330 248 36 88 chr11 106903711 106903848 -41879624 - HAL1 LINE L1 -1470 1037 908 23 0 0 0 chr11 106904416 106904439 -41879033 + AT_rich Low_complexity Low_complexity 1 23 0 30 27 0 0 chr11 106904467 106904504 -41878968 + AT_rich Low_complexity Low_complexity 1 37 0 1658 164 57 46 chr11 106904538 106904909 -41878563 + THE1C LTR MaLR 1 375 0 278 102 288 0 chr11 106905209 106905268 -41878204 + MADE1 DNA Mariner 1 76 -4 243 0 0 0 chr11 106905398 106905425 -41878047 + (TG)n Simple_repeat Simple_repeat 2 28 0 2266 58 0 0 chr11 106905425 106905702 -41877770 - AluY SINE Alu -34 277 1 703 213 133 20 chr11 106905813 106906113 -41877359 - Charlie1a DNA MER1_type -42 1413 1080 1545 181 74 21 chr11 106906113 106906439 -41877033 + MER61A LTR ERV1 1 343 0 2878 192 97 17 chr11 106906439 106907158 -41876314 + MER61A-int LTR ERV1 1 777 -4440 * 13882 94 46 46 chr11 106907151 106909045 -41874427 + MER61A-int LTR ERV1 1320 3213 -2004 570 98 0 0 chr11 106909045 106909127 -41874345 - Alu SINE Alu -7 305 224 13882 94 46 46 chr11 106909127 106909458 -41874014 + MER61A-int LTR ERV1 3213 3674 -1543 2296 112 3 0 chr11 106909458 106909762 -41873710 - AluSp SINE Alu -8 305 1 13882 94 46 46 chr11 106909762 106909948 -41873524 + MER61A-int LTR ERV1 3674 3859 -1358 5227 100 91 123 chr11 106909951 106911543 -41871929 - pTR5 LTR ERV1 0 2438 741 * 7813 118 54 16 chr11 106911541 106912850 -41870622 + MER61A-int LTR ERV1 3856 5214 -3 1901 136 54 21 chr11 106912853 106913185 -41870287 + MER61A LTR ERV1 1 343 0 543 226 51 51 chr11 106913190 106913371 -41870101 - Charlie1a DNA MER1_type -374 1081 901 * 1872 265 48 68 chr11 106913369 106914078 -41869394 - Charlie1a DNA MER1_type -758 697 3 463 323 87 13 chr11 106915007 106915236 -41868236 + MIR SINE MIR 14 259 -3 291 299 51 74 chr11 106915676 106915893 -41867579 + L2 LINE L2 3097 3308 -5 28 61 0 0 chr11 106915968 106916017 -41867455 + AT_rich Low_complexity Low_complexity 1 49 0 2252 194 25 0 chr11 106916671 106917120 -41866352 - LOR1b LTR ERV1 0 461 2 324 64 0 0 chr11 106917122 106917169 -41866303 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 9811 67 11 42 chr11 106917174 106918587 -41864885 - SVA Other Other -17 1369 1 21 0 0 0 chr11 106919499 106919520 -41863952 + AT_rich Low_complexity Low_complexity 1 21 0 755 122 0 0 chr11 106919958 106920065 -41863407 + MSTA LTR MaLR 1 107 -321 1888 69 14 47 chr11 106920124 106920428 -41863044 - AluY SINE Alu 0 309 15 277 276 238 11 chr11 106920831 106921016 -41862456 - MLT1H1 LTR MaLR -288 267 62 1955 215 47 33 chr11 106921402 106921974 -41861498 + L1M4 LINE L1 4657 5236 -910 843 204 55 21 chr11 106921964 106922199 -41861273 + L1MC2 LINE L1 6090 6332 -12 * 369 289 89 7 chr11 106922231 106922522 -41860950 + L1 LINE L1 2848 3162 -2984 22 94 0 0 chr11 106922533 106922597 -41860875 + AT_rich Low_complexity Low_complexity 1 64 0 1770 155 41 0 chr11 106922708 106922998 -41860474 - AluSg SINE Alu -8 302 1 25 31 0 0 chr11 106923150 106923182 -41860290 + AT_rich Low_complexity Low_complexity 1 32 0 208 233 0 0 chr11 106924592 106924635 -41858837 + (TG)n Simple_repeat Simple_repeat 2 44 0 454 319 55 31 chr11 106926044 106926298 -41857174 + MIR SINE MIR 3 262 0 315 316 62 77 chr11 106926425 106926634 -41856838 - MIR SINE MIR -23 239 34 224 349 83 18 chr11 106926606 106926715 -41856757 + MIR SINE MIR 30 145 -63 * 1894 176 79 0 chr11 106926722 106927177 -41856295 + L1MA8 LINE L1 3943 4433 -1713 * 5181 170 64 4 chr11 106927174 106928482 -41854990 + L1MA8 LINE L1 4826 6267 -24 868 290 24 4 chr11 106928799 106929048 -41854424 - MIR SINE MIR -10 252 1 21 82 0 0 chr11 106930446 106930495 -41852977 + AT_rich Low_complexity Low_complexity 1 49 0 239 327 113 13 chr11 106932237 106932387 -41851085 + MIR SINE MIR 54 218 -44 2326 78 0 3 chr11 106932747 106933043 -41850429 - AluY SINE Alu -13 298 4 5182 159 29 24 chr11 106935061 106936462 -41847010 - L1PA16 LINE L1 0 6166 4755 4081 191 20 9 chr11 106936454 106937315 -41846157 + L1PA16 LINE L1 3893 4762 -1384 * 498 211 149 62 chr11 106937330 106937491 -41845981 + FAM SINE Alu 1 175 0 252 0 0 0 chr11 106938059 106938087 -41845385 + (CA)n Simple_repeat Simple_repeat 1 28 0 1243 253 28 98 chr11 106938092 106938651 -41844821 - L1ME1 LINE L1 -94 6072 5567 1867 142 3 50 chr11 106938651 106938969 -41844503 + AluSg SINE Alu 1 303 -7 1243 253 28 98 chr11 106938969 106939055 -41844417 - L1ME1 LINE L1 -599 5567 5477 797 250 7 29 chr11 106939090 106939362 -41844110 - L1ME1 LINE L1 -3279 2867 2602 285 233 0 0 chr11 106939365 106939425 -41844047 - Tigger6b DNA MER2_type 0 1597 1538 * 723 177 39 0 chr11 106939423 106939553 -41843919 - Tigger6b DNA MER2_type -796 801 667 232 162 44 0 chr11 106939737 106939805 -41843667 + (TA)n Simple_repeat Simple_repeat 1 71 0 1843 289 77 11 chr11 106940715 106941286 -41842186 + L1M2b LINE L1 175 783 -6426 2100 202 39 12 chr11 106941338 106942095 -41841377 + L1M2b LINE L1 2781 3557 -3651 3098 179 28 3 chr11 106942124 106942761 -41840711 + L1MA5 LINE L1 5648 6300 0 27 29 0 0 chr11 106943402 106943436 -41840036 + AT_rich Low_complexity Low_complexity 1 34 0 792 213 48 44 chr11 106943857 106944129 -41839343 - Charlie5 DNA MER1_type 0 2624 2352 285 267 99 52 chr11 106944127 106944299 -41839173 - Charlie5 DNA MER1_type -2412 200 21 * 608 260 65 12 chr11 106944316 106944485 -41838987 + MER45A DNA AcHobo 1 178 0 44 35 0 0 chr11 106945278 106945336 -41838136 + AT_rich Low_complexity Low_complexity 1 58 0 343 315 88 28 chr11 106945807 106945988 -41837484 - MIR SINE MIR -18 244 53 327 229 0 12 chr11 106946025 106946108 -41837364 - MER46C DNA MER2_type -21 317 236 31 68 0 0 chr11 106946116 106946175 -41837297 + AT_rich Low_complexity Low_complexity 1 59 0 388 249 99 61 chr11 106946187 106946400 -41837072 - MER46C DNA MER2_type -115 223 3 25 0 0 0 chr11 106947650 106947675 -41835797 + AT_rich Low_complexity Low_complexity 1 25 0 2040 116 0 0 chr11 106948107 106948384 -41835088 + AluSx SINE Alu 1 277 -35 186 71 0 0 chr11 106948385 106948413 -41835059 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1173 79 7 0 chr11 106949270 106949422 -41834050 + AluSx SINE Alu 1 153 -159 2152 117 3 3 chr11 106949594 106949893 -41833579 + AluSx SINE Alu 1 299 -13 5128 227 23 13 chr11 106950235 106951601 -41831871 - L1 LINE L1 -897 5249 3871 6371 184 29 3 chr11 106951601 106952817 -41830655 - HSMAR2 DNA Mariner -55 1247 1 882 189 41 0 chr11 106953103 106953272 -41830200 + MER2 DNA MER2_type 11 186 -159 652 241 0 44 chr11 106953284 106953487 -41829985 - L1 LINE L1 -1000 5146 4953 686 229 13 6 chr11 106953489 106953646 -41829826 + MER2 DNA MER2_type 188 345 0 202 267 62 123 chr11 106954138 106954284 -41829188 + MIR SINE MIR 114 250 -12 4790 185 49 39 chr11 106954364 106955342 -41828130 - L1PB4 LINE L1 -1 6155 5189 195 42 0 0 chr11 106955342 106955366 -41828106 + (TTA)n Simple_repeat Simple_repeat 2 25 0 4790 185 49 39 chr11 106955366 106956379 -41827093 - L1PB4 LINE L1 -967 5189 4155 708 196 31 6 chr11 106956376 106956539 -41826933 + L1 LINE L1 2863 3029 -3117 * 21 0 0 0 chr11 106957621 106957642 -41825830 + AT_rich Low_complexity Low_complexity 1 21 0 452 278 23 23 chr11 106958139 106958272 -41825200 + MER45A DNA AcHobo 46 178 0 185 250 21 0 chr11 106958279 106958327 -41825145 + MER5B DNA MER1_type 93 141 -37 1039 335 35 12 chr11 106958748 106959175 -41824297 + LTR16B LTR ERVL 13 449 -15 4600 225 59 19 chr11 106959578 106959858 -41823614 + L1 LINE L1 3088 3355 -2791 1547 205 22 40 chr11 106959858 106960228 -41823244 - MLT1A1 LTR MaLR -2 363 1 4600 225 59 19 chr11 106960228 106961081 -41822391 + L1 LINE L1 3355 4289 -1857 369 0 0 0 chr11 106961081 106961122 -41822350 + (CA)n Simple_repeat Simple_repeat 2 42 0 4600 225 59 19 chr11 106961122 106961367 -41822105 + L1 LINE L1 4289 4523 -1623 744 99 0 0 chr11 106961385 106961486 -41821986 + AluY SINE Alu 32 132 -179 180 77 0 0 chr11 106961486 106961512 -41821960 + (A)n Simple_repeat Simple_repeat 1 26 0 1233 120 0 0 chr11 106961513 106961688 -41821784 + AluY SINE Alu 128 302 -9 701 269 18 0 chr11 106961695 106961866 -41821606 + L1 LINE L1 4552 4725 -1421 36 53 0 0 chr11 106961946 106962003 -41821469 + AT_rich Low_complexity Low_complexity 1 57 0 2332 72 0 10 chr11 106962178 106962482 -41820990 - AluY SINE Alu -10 301 1 201 301 19 103 chr11 106963337 106963493 -41819979 + L2 LINE L2 3171 3313 0 1044 75 0 0 chr11 106963719 106963853 -41819619 - L1PA10 LINE L1 -10 6158 6025 294 311 22 0 chr11 106964642 106964732 -41818740 - MER5A DNA MER1_type -80 109 18 532 222 29 41 chr11 106964833 106965004 -41818468 + L1ME LINE L1 1936 2104 -4292 817 284 129 5 chr11 106965143 106965724 -41817748 + L1ME LINE L1 2233 2885 -3330 244 263 165 8 chr11 106965796 106965929 -41817543 + L1ME LINE L1 4959 5112 -1103 304 238 38 0 chr11 106965985 106966065 -41817407 + L1ME LINE L1 5187 5269 -946 1609 142 8 0 chr11 106966068 106966308 -41817164 + AluSx SINE Alu 1 242 -70 595 249 114 20 chr11 106966324 106966738 -41816734 + L1ME LINE L1 5257 5702 -529 15345 200 22 10 chr11 106966839 106967285 -41816187 + L1MA3 LINE L1 735 1174 -6391 2360 82 0 19 chr11 106967285 106967601 -41815871 - AluSg SINE Alu 0 310 1 15345 200 22 10 chr11 106967601 106970430 -41813042 + L1MA3 LINE L1 1174 4119 -3446 180 0 0 0 chr11 106970430 106970450 -41813022 + (CAA)n Simple_repeat Simple_repeat 2 21 0 15345 200 22 10 chr11 106970450 106973099 -41810373 + L1MA3 LINE L1 4119 6735 -830 1572 191 133 16 chr11 106973099 106973482 -41809990 - MSTA LTR MaLR 0 428 1 8634 171 5 38 chr11 106973482 106975110 -41808362 - MSTA-int LTR MaLR 0 1580 3 1746 157 124 38 chr11 106975113 106975239 -41808233 - MSTA LTR MaLR 0 428 314 2021 138 36 28 chr11 106975239 106975600 -41807872 - THE1B LTR MaLR 0 364 1 10224 127 10 7 chr11 106975600 106977175 -41806297 - THE1B-int LTR MaLR 0 1580 1 2263 136 8 30 chr11 106977175 106977544 -41805928 - THE1B LTR MaLR 0 364 4 1746 157 124 38 chr11 106977544 106977809 -41805663 - MSTA LTR MaLR -113 315 1 5263 170 17 3 chr11 106977811 106978789 -41804683 + L1MA3 LINE L1 6733 7724 0 263 330 21 10 chr11 106978799 106978896 -41804576 - MIR SINE MIR -151 111 14 704 248 4 84 chr11 106979079 106979317 -41804155 + MER58A DNA MER1_type 3 221 -3 207 0 0 0 chr11 106979942 106979965 -41803507 + (T)n Simple_repeat Simple_repeat 1 23 0 27 29 0 0 chr11 106980752 106980786 -41802686 + AT_rich Low_complexity Low_complexity 1 34 0 284 349 141 22 chr11 106981045 106981555 -41801917 - L2 LINE L2 -1184 2130 1560 337 337 37 6 chr11 106982126 106982289 -41801183 - MIR SINE MIR -56 206 39 251 315 14 0 chr11 106982680 106982753 -41800719 + MIR SINE MIR 160 233 -29 234 0 0 0 chr11 106982776 106982802 -41800670 + (TTA)n Simple_repeat Simple_repeat 2 27 0 2826 175 108 125 chr11 106983341 106983650 -41799822 + L1MC3 LINE L1 6794 7107 -678 279 218 13 39 chr11 106983650 106983728 -41799744 + MLT1F1 LTR MaLR 33 108 -459 2826 175 108 125 chr11 106983728 106984343 -41799129 + L1MC3 LINE L1 7107 7778 -7 22 0 0 0 chr11 106984462 106984484 -41798988 + AT_rich Low_complexity Low_complexity 1 22 0 500 309 77 16 chr11 106986265 106986459 -41797013 + LTR16A1 LTR ERVL 252 457 0 26 104 0 0 chr11 106987061 106987157 -41796315 + AT_rich Low_complexity Low_complexity 1 96 0 490 221 0 0 chr11 106987294 106987380 -41796092 - MER5A DNA MER1_type 0 189 104 248 274 0 0 chr11 106987386 106987448 -41796024 + CT-rich Low_complexity Low_complexity 2 63 0 28 0 0 0 chr11 106987864 106987892 -41795580 + AT_rich Low_complexity Low_complexity 1 28 0 250 329 98 0 chr11 106988460 106988542 -41794930 + MIR SINE MIR 52 141 -121 1807 162 60 28 chr11 106989125 106989477 -41793995 + THE1B LTR MaLR 1 363 -1 9466 117 4 3 chr11 106989485 106990849 -41792623 + THE1B-int LTR MaLR 216 1580 0 1932 148 48 28 chr11 106990849 106991206 -41792266 + THE1B LTR MaLR 1 364 0 928 254 58 5 chr11 106991586 106992015 -41791457 + L1MC1 LINE L1 2854 3305 -2841 729 234 53 53 chr11 106992015 106992242 -41791230 - MLT1A2 LTR MaLR -144 230 4 4985 222 35 36 chr11 106992245 106992358 -41791114 + L1MC1 LINE L1 4302 4414 -1919 2093 139 128 8 chr11 106992358 106992740 -41790732 + MSTA LTR MaLR 1 428 0 7666 203 32 9 chr11 106992740 106994355 -41789117 + MSTA-int LTR MaLR 1 1651 0 1945 162 128 8 chr11 106994355 106994737 -41788735 + MSTA LTR MaLR 1 428 0 4985 222 35 36 chr11 106994737 106996649 -41786823 + L1MC1 LINE L1 4411 6315 -18 2295 73 10 0 chr11 106996661 106996961 -41786511 + AluY SINE Alu 1 303 -8 4267 223 37 41 chr11 106997001 106997543 -41785929 + L1M4 LINE L1 3850 4393 -1781 2327 42 3 3 chr11 106997543 106997826 -41785646 + AluY SINE Alu 28 310 -1 4267 223 37 41 chr11 106997826 106999016 -41784456 + L1M4 LINE L1 4393 5582 -592 1476 210 3 19 chr11 106999016 106999326 -41784146 - AluJo SINE Alu -4 308 4 4267 223 37 41 chr11 106999326 106999545 -41783927 + L1M4 LINE L1 5582 5800 -374 6429 193 68 17 chr11 106999545 107002059 -41781413 - L1PA16 LINE L1 0 6166 3531 619 127 42 34 chr11 107002059 107002177 -41781295 + MLT2A2 LTR ERVL 295 413 -40 240 279 35 0 chr11 107002187 107002273 -41781199 + L1MC4 LINE L1 6615 6703 -1339 323 21 125 0 chr11 107002306 107002354 -41781118 + MLT2A2 LTR ERVL 400 453 0 9695 228 65 10 chr11 107002371 107004629 -41778843 + ERVL-A2 LTR ERVL 282 2662 -3102 1173 223 24 79 chr11 107004634 107005015 -41778457 + MLT1A1 LTR MaLR 6 365 0 2694 211 12 14 chr11 107005015 107005575 -41777897 + MLT1A1-int LTR MaLR 1 559 -1176 1578 190 5 92 chr11 107005610 107005979 -41777493 + ERVL-A2 LTR ERVL 2803 3139 -2625 4763 164 35 26 chr11 107005984 107006971 -41776501 + L1MA8 LINE L1 5285 6280 -11 1217 235 42 0 chr11 107007030 107007290 -41776182 + ERVL-A2 LTR ERVL 3133 3403 -2361 1866 139 35 43 chr11 107007290 107007665 -41775807 + ERVL-B1 LTR ERVL 5381 5752 -12 1627 224 21 94 chr11 107007670 107008151 -41775321 + MLT2B1 LTR ERVL 1 446 -74 318 98 0 0 chr11 107008231 107008282 -41775190 + (CA)n Simple_repeat Simple_repeat 2 52 0 1976 267 111 40 chr11 107008282 107009492 -41773980 + L1ME2 LINE L1 3899 5320 -844 2135 137 0 3 chr11 107009492 107009805 -41773667 - AluSx SINE Alu 0 312 1 1976 267 111 40 chr11 107009805 107010691 -41772781 + L1ME2 LINE L1 5320 6142 -22 359 320 25 0 chr11 107010725 107010847 -41772625 - MIR SINE MIR -95 167 43 1636 183 14 111 chr11 107011554 107011771 -41771701 + MLT1B LTR MaLR 1 237 -153 1593 95 130 4 chr11 107011771 107012033 -41771439 + AluSc SINE Alu 2 296 -3 2281 76 0 7 chr11 107012033 107012334 -41771138 + AluY SINE Alu 1 299 -12 1636 183 14 111 chr11 107012334 107012547 -41770925 + MLT1B LTR MaLR 235 390 0 180 152 0 0 chr11 107012638 107012671 -41770801 + (CA)n Simple_repeat Simple_repeat 2 34 0 402 248 39 59 chr11 107012883 107013036 -41770436 - MIR SINE MIR -38 224 75 426 309 84 36 chr11 107013219 107013578 -41769894 - L1MC4a LINE L1 -1922 5886 5511 2457 177 24 24 chr11 107014273 107014827 -41768645 - L1MA7 LINE L1 -2 6289 5736 722 335 99 33 chr11 107015379 107015878 -41767594 - L2 LINE L2 -4 3309 2777 1145 291 64 75 chr11 107015888 107016004 -41767468 + MLT1E LTR MaLR 48 164 -429 312 120 0 0 chr11 107016004 107016054 -41767418 + (TG)n Simple_repeat Simple_repeat 2 51 0 1145 291 64 75 chr11 107016054 107016486 -41766986 + MLT1E LTR MaLR 164 590 -3 994 259 56 43 chr11 107016492 107016795 -41766677 - L2 LINE L2 -513 2801 2490 1703 175 36 0 chr11 107016795 107017075 -41766397 - AluJb SINE Alu -20 292 3 994 259 56 43 chr11 107017075 107017165 -41766307 - L2 LINE L2 -824 2490 2403 514 271 18 47 chr11 107017601 107017771 -41765701 + MLT1E2 LTR MaLR 283 447 -179 6419 156 11 4 chr11 107018039 107019511 -41763961 - L1MA3 LINE L1 0 6305 4822 * 9047 144 17 33 chr11 107019494 107021050 -41762422 + THE1C-int LTR MaLR 50 1580 0 2031 158 63 0 chr11 107021065 107021413 -41762059 + THE1C LTR MaLR 1 370 -5 180 0 0 0 chr11 107022145 107022165 -41761307 + (T)n Simple_repeat Simple_repeat 1 20 0 4319 228 48 46 chr11 107024155 107024800 -41758672 - L1MC1 LINE L1 -97 6516 5874 1703 171 4 7 chr11 107024800 107025075 -41758397 + AluJb SINE Alu 1 274 -38 4319 228 48 46 chr11 107025075 107025295 -41758177 - L1MC1 LINE L1 -739 5874 5656 309 51 0 0 chr11 107025295 107025334 -41758138 + (TA)n Simple_repeat Simple_repeat 1 39 0 4319 228 48 46 chr11 107025334 107026139 -41757333 - L1MC1 LINE L1 -957 5656 4854 2463 59 0 7 chr11 107026139 107026444 -41757028 - AluY SINE Alu -3 308 6 4319 228 48 46 chr11 107026444 107027444 -41756028 - L1MC1 LINE L1 -1759 4854 3828 1258 254 72 40 chr11 107027448 107028140 -41755332 - L1MC1 LINE L1 -3271 3155 2442 1309 163 56 38 chr11 107028140 107028428 -41755044 + AluJo SINE Alu 1 293 -19 2979 172 69 22 chr11 107028451 107029573 -41753899 - L1MC1 LINE L1 -3976 2450 1183 4020 258 34 15 chr11 107029590 107031107 -41752365 - L1M4 LINE L1 -1957 4425 2881 509 252 36 0 chr11 107031096 107031235 -41752237 - L1 LINE L1 -2544 3602 3459 * 6170 179 50 37 chr11 107031241 107031678 -41751794 - L1M4 LINE L1 -3516 2866 2436 3401 139 59 18 chr11 107031678 107032002 -41751470 - MER39B LTR ERV1 0 653 344 2017 77 0 12 chr11 107032002 107032288 -41751184 - AluY SINE Alu 0 310 28 3401 139 59 18 chr11 107032288 107032587 -41750885 - MER39B LTR ERV1 -309 344 3 6170 179 50 37 chr11 107032587 107033875 -41749597 - L1M4 LINE L1 -3946 2436 1166 2278 106 0 3 chr11 107033875 107034187 -41749285 - AluSq SINE Alu -2 311 1 6170 179 50 37 chr11 107034187 107034333 -41749139 - L1M4 LINE L1 -5216 1166 1023 303 49 0 0 chr11 107034333 107034374 -41749098 + (TG)n Simple_repeat Simple_repeat 2 42 0 6170 179 50 37 chr11 107034374 107034969 -41748503 - L1M4 LINE L1 -5359 1023 5 2192 143 48 46 chr11 107035122 107035555 -41747917 - MER61C LTR ERV1 0 434 1 23 0 0 0 chr11 107035563 107035586 -41747886 + AT_rich Low_complexity Low_complexity 1 23 0 1655 199 0 0 chr11 107035624 107035921 -41747551 - AluSx SINE Alu -15 297 1 243 0 0 0 chr11 107036725 107036752 -41746720 + (TG)n Simple_repeat Simple_repeat 2 28 0 28 29 0 0 chr11 107037340 107037375 -41746097 + AT_rich Low_complexity Low_complexity 1 35 0 1434 181 16 30 chr11 107037521 107037824 -41745648 + AluJb SINE Alu 1 299 -13 19148 213 33 36 chr11 107038528 107043075 -41740397 + L1MA3 LINE L1 20 4581 -3143 1811 161 10 3 chr11 107043075 107043379 -41740093 + AluSx SINE Alu 7 312 0 19148 213 33 36 chr11 107043379 107045594 -41737878 + L1MA3 LINE L1 4581 6761 -963 2019 143 0 0 chr11 107045594 107045888 -41737584 + AluSg SINE Alu 1 294 -16 19148 213 33 36 chr11 107045888 107046849 -41736623 + L1MA3 LINE L1 6761 7724 0 26 0 0 0 chr11 107046849 107046875 -41736597 + AT_rich Low_complexity Low_complexity 1 26 0 3021 113 23 4 chr11 107047057 107047527 -41735945 + L1PA13 LINE L1 5683 6161 -2 206 159 63 32 chr11 107049035 107049098 -41734374 + (TATATG)n Simple_repeat Simple_repeat 1 65 0 401 368 69 28 chr11 107049387 107050012 -41733460 + L2 LINE L2 2656 3300 -13 * 436 254 36 36 chr11 107050011 107050149 -41733323 - L2 LINE L2 -1 3312 3175 1516 189 11 0 chr11 107050672 107050957 -41732515 + AluJo SINE Alu 1 288 -24 264 295 57 9 chr11 107051525 107051630 -41731842 - L1MC/D LINE L1 -2085 5723 5614 871 260 121 30 chr11 107051835 107052239 -41731233 - MLT1C LTR MaLR 0 467 27 348 24 0 0 chr11 107052384 107052425 -41731047 + (CA)n Simple_repeat Simple_repeat 2 42 0 963 271 22 76 chr11 107054118 107054487 -41728985 + LTR16A LTR ERVL 97 445 -5 562 341 61 49 chr11 107054831 107055164 -41728308 + HERV16 LTR ERVL 382 726 -4270 423 0 0 0 chr11 107055164 107055211 -41728261 + (CAAAA)n Simple_repeat Simple_repeat 3 49 0 562 341 61 49 chr11 107055211 107055448 -41728024 + HERV16 LTR ERVL 726 959 -4037 2233 121 0 0 chr11 107055449 107055756 -41727716 + AluSc SINE Alu 1 307 -2 26 30 0 0 chr11 107055770 107055803 -41727669 + AT_rich Low_complexity Low_complexity 1 33 0 1481 334 110 23 chr11 107056190 107057090 -41726382 + HERV16 LTR ERVL 985 1962 -3034 606 356 13 19 chr11 107057243 107057560 -41725912 - HERVL LTR ERVL -1477 4177 3863 226 211 0 0 chr11 107057580 107057618 -41725854 + (CACG)n Simple_repeat Simple_repeat 2 39 0 335 309 36 60 chr11 107057981 107058149 -41725323 - HERVL LTR ERVL -2274 3490 3327 621 350 92 15 chr11 107058544 107059010 -41724462 - HERVL LTR ERVL -2588 2408 1907 201 182 0 0 chr11 107059048 107059081 -41724391 + (TA)n Simple_repeat Simple_repeat 1 33 0 2065 144 60 6 chr11 107059335 107059682 -41723790 - LTR47A LTR ERVL -86 366 1 1032 182 98 97 chr11 107059772 107060241 -41723231 - LTR23-int LTR ERV1 -258 4865 4464 267 237 0 0 chr11 107060606 107060665 -41722807 + MLT1H LTR MaLR 491 549 0 2327 50 0 0 chr11 107060833 107061142 -41722330 + AluY SINE Alu 1 309 0 1656 153 85 24 chr11 107061225 107061565 -41721907 - MER46B DNA MER2_type 0 236 1 227 257 54 0 chr11 107062294 107062368 -41721104 + MLT1H LTR MaLR 29 106 -443 3401 36 2 0 chr11 107063392 107063807 -41719665 - L1PA4 LINE L1 -3 6152 5737 6434 32 0 0 chr11 107063807 107064578 -41718894 + L1P LINE L1 3675 4445 -1701 26 50 0 0 chr11 107064755 107064795 -41718677 + AT_rich Low_complexity Low_complexity 1 40 0 210 37 0 0 chr11 107064798 107064825 -41718647 + (TA)n Simple_repeat Simple_repeat 1 27 0 1124 243 35 89 chr11 107065344 107065952 -41717520 - L1ME1 LINE L1 -27 6139 5565 1847 180 38 3 chr11 107066247 107066592 -41716880 + MLT1B LTR MaLR 33 389 -1 466 318 0 78 chr11 107066676 107066868 -41716604 + MER45A DNA AcHobo 2 178 0 273 163 0 0 chr11 107066982 107067031 -41716441 + (TG)n Simple_repeat Simple_repeat 2 50 0 267 203 40 14 chr11 107067465 107067539 -41715933 + HAL1 LINE L1 1221 1296 -1211 21 0 0 0 chr11 107067625 107067646 -41715826 + AT_rich Low_complexity Low_complexity 1 21 0 261 338 0 0 chr11 107067951 107068028 -41715444 + L2 LINE L2 3234 3310 -3 26 64 0 0 chr11 107068117 107068164 -41715308 + AT_rich Low_complexity Low_complexity 1 47 0 242 244 35 104 chr11 107068661 107068723 -41714749 + HAL1 LINE L1 1290 1342 -1165 2169 108 3 0 chr11 107068723 107069018 -41714454 + AluSg SINE Alu 1 296 -14 242 244 35 104 chr11 107069018 107069070 -41714402 + HAL1 LINE L1 1342 1396 -1111 187 123 12 62 chr11 107069105 107069186 -41714286 + (TAGA)n Simple_repeat Simple_repeat 2 78 0 1567 161 0 4 chr11 107069222 107069477 -41713995 - AluJb SINE Alu -21 291 38 199 179 30 0 chr11 107069481 107069548 -41713924 + (TA)n Simple_repeat Simple_repeat 1 69 0 2153 162 18 49 chr11 107069584 107069827 -41713645 + Tigger4(Zombi) DNA MER2_type 2295 2521 -210 1988 125 0 0 chr11 107069827 107070132 -41713340 - AluSx SINE Alu 0 305 1 2153 162 18 49 chr11 107070132 107070337 -41713135 + Tigger4(Zombi) DNA MER2_type 2521 2731 0 236 355 24 20 chr11 107070379 107070503 -41712969 + MER5A DNA MER1_type 1 137 -52 2005 127 30 46 chr11 107071051 107071421 -41712051 + MER34B LTR ERV1 1 364 -201 235 160 100 0 chr11 107071422 107071472 -41712000 + MER34B LTR ERV1 511 565 0 22753 47 1 3 chr11 107072471 107076121 -41707351 - L1PA5 LINE L1 -2 6152 2497 908 205 37 55 chr11 107076221 107076494 -41706978 + L1MB7 LINE L1 5789 6056 -128 2279 110 0 19 chr11 107076496 107076815 -41706657 + AluSq SINE Alu 1 313 0 5199 214 57 0 chr11 107076820 107077829 -41705643 - L1M1 LINE L1 -6370 1195 130 819 110 0 0 chr11 107077829 107077947 -41705525 - AluSq SINE Alu -12 301 184 10103 30 1 3 chr11 107077947 107079946 -41703526 + L1PA4 LINE L1 4158 6155 0 1489 96 0 5 chr11 107079963 107080160 -41703312 - AluSq SINE Alu -117 196 1 561 215 0 23 chr11 107080160 107080290 -41703182 - L1M1 LINE L1 -7428 137 11 1100 281 112 43 chr11 107080319 107080835 -41702637 + MLT1H1 LTR MaLR 1 552 -3 360 200 19 105 chr11 107080842 107080947 -41702525 + MIR SINE MIR 145 240 -22 27 49 0 0 chr11 107081030 107081071 -41702401 + AT_rich Low_complexity Low_complexity 1 41 0 582 181 128 95 chr11 107081099 107081342 -41702130 - ORSL DNA AcHobo -24 251 1 26 0 0 0 chr11 107082762 107082788 -41700684 + AT_rich Low_complexity Low_complexity 1 26 0 284 274 11 42 chr11 107083225 107083320 -41700152 + MIR SINE MIR 161 252 -10 193 210 32 0 chr11 107083336 107083398 -41700074 + CT-rich Low_complexity Low_complexity 4 67 0 282 241 98 0 chr11 107085094 107085206 -41698266 - L1M4 LINE L1 -807 5339 5217 232 290 0 58 chr11 107085223 107085292 -41698180 + L2 LINE L2 3158 3222 -50 313 310 66 6 chr11 107085640 107085799 -41697673 - MIR SINE MIR -30 232 62 233 325 24 12 chr11 107086655 107086738 -41696734 + MER5B DNA MER1_type 31 114 -64 21 36 0 0 chr11 107087168 107087196 -41696276 + AT_rich Low_complexity Low_complexity 1 28 0 307 282 37 74 chr11 107087643 107087806 -41695666 + L1MCb LINE L1 85 569 -5853 834 195 97 81 chr11 107087845 107088185 -41695287 + MLT1A1 LTR MaLR 1 422 -6 2230 155 72 83 chr11 107088667 107089182 -41694290 - LTR22 LTR ERVK 0 509 1 21596 98 17 3 chr11 107089183 107092334 -41691138 - HERVK22 LTR ERVK -1 6836 2314 4670 114 16 0 chr11 107092389 107093058 -41690414 - HERVK22 LTR ERVK -6149 688 9 2595 146 79 21 chr11 107093067 107093547 -41689925 - LTR22 LTR ERVK -1 508 1 287 241 131 113 chr11 107093547 107093910 -41689562 + L1MCb LINE L1 849 1221 -5202 26 50 0 0 chr11 107094587 107094627 -41688845 + AT_rich Low_complexity Low_complexity 1 40 0 282 56 0 0 chr11 107094696 107094732 -41688740 + (CAT)n Simple_repeat Simple_repeat 1 36 0 473 242 33 20 chr11 107095148 107095301 -41688171 - MER112 DNA MER1_type -100 160 6 246 62 0 0 chr11 107095766 107095798 -41687674 + (CATATA)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr11 107095816 107095837 -41687635 + AT_rich Low_complexity Low_complexity 1 21 0 195 301 72 36 chr11 107095946 107096029 -41687443 - MIR SINE MIR -78 184 99 21 0 0 0 chr11 107096202 107096223 -41687249 + AT_rich Low_complexity Low_complexity 1 21 0 199 325 183 8 chr11 107097032 107097152 -41686320 - MER5A DNA MER1_type 0 189 49 786 206 62 64 chr11 107098588 107098916 -41684556 - MSTD LTR MaLR -2 394 1 25 51 0 0 chr11 107099845 107099884 -41683588 + AT_rich Low_complexity Low_complexity 1 39 0 33 25 0 0 chr11 107100015 107100055 -41683417 + AT_rich Low_complexity Low_complexity 1 40 0 213 209 0 0 chr11 107100279 107100322 -41683150 + (TGGA)n Simple_repeat Simple_repeat 3 45 0 335 271 87 64 chr11 107102382 107102893 -41680579 - L1MCa LINE L1 -4924 1630 1135 295 158 0 0 chr11 107103617 107103674 -41679798 - Alu SINE Alu 0 302 246 23 33 0 0 chr11 107103675 107103705 -41679767 + AT_rich Low_complexity Low_complexity 1 30 0 365 306 52 63 chr11 107104187 107104642 -41678830 - L1MCa LINE L1 -5621 424 40 3740 98 0 4 chr11 107104797 107105310 -41678162 - MER9 LTR ERVK 0 511 1 21 82 0 0 chr11 107106165 107106214 -41677258 + AT_rich Low_complexity Low_complexity 1 49 0 252 351 0 0 chr11 107106553 107106630 -41676842 + L2 LINE L2 3237 3313 0 213 209 0 0 chr11 107108016 107108059 -41675413 + (CA)n Simple_repeat Simple_repeat 1 43 0 243 323 55 47 chr11 107108155 107108282 -41675190 - MIR SINE MIR -133 129 2 216 209 0 0 chr11 107108767 107108810 -41674662 + (TAA)n Simple_repeat Simple_repeat 1 43 0 382 382 53 16 chr11 107108844 107109090 -41674382 + LTR16C LTR ERVL 1 255 -236 21 71 0 0 chr11 107109106 107109148 -41674324 + AT_rich Low_complexity Low_complexity 1 42 0 255 344 43 18 chr11 107109232 107109395 -41674077 + LTR16C LTR ERVL 315 481 -10 1456 268 32 54 chr11 107109459 107110053 -41673419 - L1MC4 LINE L1 -7 8035 7455 666 274 22 40 chr11 107110053 107110279 -41673193 + L2 LINE L2 1006 1227 -2087 346 242 57 32 chr11 107110357 107110481 -41672991 + Charlie5 DNA MER1_type 1 127 -2485 * 1088 166 194 9 chr11 107110478 107110803 -41672669 + Charlie5 DNA MER1_type 2234 2618 0 1088 216 127 38 chr11 107110938 107111229 -41672243 - MLT1A1 LTR MaLR -11 354 38 792 298 47 58 chr11 107111235 107111334 -41672138 + L2 LINE L2 2588 2687 -626 234 0 0 0 chr11 107111334 107111360 -41672112 + (CA)n Simple_repeat Simple_repeat 2 27 0 792 298 47 58 chr11 107111360 107111943 -41671529 + L2 LINE L2 2687 3311 -2 318 250 48 0 chr11 107112575 107112659 -41670813 - L1ME3A LINE L1 -25 6145 6058 592 186 0 0 chr11 107112659 107112772 -41670700 - FLAM_C SINE Alu -30 113 1 2261 77 40 0 chr11 107112781 107113080 -41670392 - AluY SINE Alu 0 311 1 469 273 40 25 chr11 107113096 107113419 -41670053 - L1ME3A LINE L1 -118 6052 5691 378 42 0 0 chr11 107113419 107113467 -41670005 + (TG)n Simple_repeat Simple_repeat 2 49 0 469 273 40 25 chr11 107113467 107113493 -41669979 - L1ME3A LINE L1 -479 5691 5667 282 316 118 17 chr11 107113673 107113910 -41669562 + MIR SINE MIR 2 262 0 844 157 0 17 chr11 107115710 107115888 -41667584 + CT-rich Low_complexity Low_complexity 1 175 0 22 0 0 0 chr11 107116056 107116078 -41667394 + AT_rich Low_complexity Low_complexity 1 22 0 441 0 0 0 chr11 107116349 107116398 -41667074 + (TG)n Simple_repeat Simple_repeat 2 50 0 31 44 0 0 chr11 107116896 107116941 -41666531 + AT_rich Low_complexity Low_complexity 1 45 0 1779 128 0 0 chr11 107117677 107117928 -41665544 - AluSg SINE Alu -13 297 47 1846 120 97 26 chr11 107118348 107118698 -41664774 - THE1C LTR MaLR 0 375 1 2277 59 0 14 chr11 107119160 107119473 -41663999 + AluY SINE Alu 1 309 0 25 31 0 0 chr11 107119728 107119760 -41663712 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr11 107119878 107119901 -41663571 + AT_rich Low_complexity Low_complexity 1 23 0 522 199 91 43 chr11 107120335 107120521 -41662951 + L1MC5 LINE L1 6998 7192 -769 503 295 74 40 chr11 107120861 107121356 -41662116 + L1MEc LINE L1 807 1208 -4905 238 100 50 50 chr11 107121493 107121553 -41661919 + L1MEc LINE L1 2207 2266 -4130 897 239 50 39 chr11 107121584 107121844 -41661628 + L1ME LINE L1 5403 5665 -499 351 44 0 0 chr11 107121962 107122007 -41661465 + (CA)n Simple_repeat Simple_repeat 2 46 0 293 204 124 26 chr11 107122073 107122186 -41661286 - L1ME LINE L1 -666 5496 5373 261 249 58 92 chr11 107122557 107122730 -41660742 - MLT1-int LTR MaLR -172 1199 1033 22 35 0 0 chr11 107123950 107123979 -41659493 + AT_rich Low_complexity Low_complexity 1 29 0 217 296 37 12 chr11 107124248 107124329 -41659143 + MIR SINE MIR 95 177 -85 210 238 0 100 chr11 107124521 107124601 -41658871 + L2 LINE L2 3201 3272 0 190 287 59 35 chr11 107124601 107124702 -41658770 - MIR SINE MIR -103 105 3 258 106 0 0 chr11 107124737 107124784 -41658688 + (GA)n Simple_repeat Simple_repeat 2 48 0 210 162 0 0 chr11 107126517 107126554 -41656918 + (TTATG)n Simple_repeat Simple_repeat 3 39 0 32 26 0 0 chr11 107126601 107126640 -41656832 + AT_rich Low_complexity Low_complexity 1 39 0 939 252 60 91 chr11 107127165 107127581 -41655891 + MER77 LTR ERV1 92 494 -111 2008 18 0 0 chr11 107127668 107127893 -41655579 - AluYa5 SINE Alu -1 310 86 342 264 14 2 chr11 107127908 107127999 -41655473 + MER77 LTR ERV1 465 599 -6 363 328 37 5 chr11 107128396 107128585 -41654887 - HAL1 LINE L1 -761 1746 1552 191 338 14 0 chr11 107128718 107128789 -41654683 + L2 LINE L2 3232 3303 -10 585 182 29 53 chr11 107130037 107130207 -41653265 + L1MA8 LINE L1 6093 6258 -33 2970 151 64 48 chr11 107130207 107130835 -41652637 - Tigger3b DNA MER2_type 0 1231 594 3413 166 36 2 chr11 107132092 107132702 -41650770 - Tigger3b DNA MER2_type -600 631 1 7030 60 1 1 chr11 107132890 107134401 -41649071 - L1PA7 LINE L1 -1 6153 4642 22 0 0 0 chr11 107135301 107135323 -41648149 + AT_rich Low_complexity Low_complexity 1 22 0 856 309 60 29 chr11 107135504 107136220 -41647252 + L1MEc LINE L1 1086 1823 -4573 1712 189 17 5 chr11 107136504 107136838 -41646634 + MSTB2 LTR MaLR 23 299 -97 2232 206 9 42 chr11 107136839 107137418 -41646054 + L1PB1 LINE L1 4234 4793 -1353 3947 118 84 9 chr11 107137420 107138098 -41645374 + L1PB1 LINE L1 5423 6151 0 583 276 59 31 chr11 107138270 107138632 -41644840 + L1ME3A LINE L1 5800 6163 -7 1964 117 4 0 chr11 107138673 107138947 -41644525 - AluSx SINE Alu -17 295 21 264 59 0 0 chr11 107139108 107139142 -41644330 + (CA)n Simple_repeat Simple_repeat 1 34 0 212 398 65 11 chr11 107140699 107140885 -41642587 + MER91A DNA MER1_type 1 196 0 1529 213 108 7 chr11 107142173 107142508 -41640964 + L1MDa LINE L1 1983 2395 -4145 372 22 0 0 chr11 107142508 107142553 -41640919 + (TG)n Simple_repeat Simple_repeat 2 46 0 1529 213 108 7 chr11 107142553 107142761 -41640711 + L1MDa LINE L1 2395 2581 -3959 1254 262 57 26 chr11 107142827 107143410 -41640062 + L1MDa LINE L1 2666 3266 -3274 5985 98 9 15 chr11 107143418 107144301 -41639171 - L1PA8A LINE L1 0 6131 5254 7325 129 49 10 chr11 107144308 107144968 -41638504 + L1MA1 LINE L1 2188 2821 -4744 2025 123 0 20 chr11 107144968 107145268 -41638204 - AluSc SINE Alu -15 294 1 7325 129 49 10 chr11 107145268 107145965 -41637507 + L1MA1 LINE L1 2821 3598 -3967 6375 152 20 16 chr11 107145969 107147946 -41635526 + L1MA1 LINE L1 5731 7721 0 8311 228 37 39 chr11 107147973 107153734 -41629738 - L1MA4A LINE L1 -162 6843 949 194 339 134 6 chr11 107153735 107153906 -41629566 - L2 LINE L2 -480 2834 2642 24 67 0 0 chr11 107154001 107154046 -41629426 + AT_rich Low_complexity Low_complexity 1 45 0 2135 172 24 120 chr11 107154746 107155321 -41628151 - MLT2B1 LTR ERVL 0 520 1 347 253 71 0 chr11 107155378 107155477 -41627995 - MLT1L LTR MaLR -388 227 122 194 267 17 33 chr11 107155591 107155651 -41627821 - MIR SINE MIR -6 256 198 30473 73 2 1 chr11 107156560 107160586 -41622886 + L1P LINE L1 11 4039 -2107 322 243 29 0 chr11 107160768 107160838 -41622634 - L2 LINE L2 0 3313 3242 2532 61 0 3 chr11 107160879 107161191 -41622281 + AluY SINE Alu 1 311 0 811 61 0 0 chr11 107161202 107161301 -41622171 - L1PA7 LINE L1 -30 6124 6026 263 116 0 0 chr11 107161297 107161340 -41622132 + L1PA6 LINE L1 6108 6150 -4 * 329 321 61 8 chr11 107161514 107161645 -41621827 - L2 LINE L2 -230 3042 2905 1192 128 34 75 chr11 107165013 107165279 -41618193 + L1MA5A LINE L1 6043 6297 0 38 51 0 0 chr11 107165518 107165577 -41617895 + AT_rich Low_complexity Low_complexity 1 59 0 2043 113 55 0 chr11 107165692 107165985 -41617487 + AluSg1 SINE Alu 1 309 0 21 36 0 0 chr11 107166739 107166767 -41616705 + AT_rich Low_complexity Low_complexity 1 28 0 452 299 45 13 chr11 107166809 107166966 -41616506 + L1MC/D LINE L1 5477 5638 -2170 29276 38 3 2 chr11 107167423 107171777 -41611695 + L1PA5 LINE L1 1791 6154 0 247 277 11 23 chr11 107172393 107172504 -41610968 - L1ME LINE L1 -690 5474 5366 2195 133 16 21 chr11 107172601 107172976 -41610496 + THE1C LTR MaLR 1 373 -2 5866 95 44 76 chr11 107173011 107174088 -41609384 - L1PA8A LINE L1 0 6131 5073 32 57 0 0 chr11 107174453 107174506 -41608966 + AT_rich Low_complexity Low_complexity 1 53 0 208 302 0 0 chr11 107175212 107175275 -41608197 + A-rich Low_complexity Low_complexity 2 64 0 2189 98 0 13 chr11 107175998 107176313 -41607159 - AluY SINE Alu 0 311 1 1496 234 31 29 chr11 107176361 107176843 -41606629 + Charlie1b DNA MER1_type 35 517 -6 23 0 0 0 chr11 107178272 107178295 -41605177 + AT_rich Low_complexity Low_complexity 1 23 0 347 312 48 21 chr11 107178996 107179185 -41604287 + L2 LINE L2 1905 2098 -1216 550 201 177 0 chr11 107180844 107181008 -41602464 + L1MA9 LINE L1 5860 6052 -260 28 0 0 0 chr11 107181011 107181039 -41602433 + AT_rich Low_complexity Low_complexity 1 28 0 205 200 0 0 chr11 107181085 107181120 -41602352 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 244 117 0 0 chr11 107181127 107181172 -41602300 + L1MA9 LINE L1 6222 6274 -25 1901 186 50 21 chr11 107181600 107181880 -41601592 - Tigger2a DNA MER2_type -2277 431 134 1808 141 13 10 chr11 107181880 107182184 -41601288 + AluSq SINE Alu 1 305 -8 1901 186 50 21 chr11 107182184 107182322 -41601150 - Tigger2a DNA MER2_type -2574 134 1 4690 22 4 0 chr11 107182366 107182918 -41600554 + L1PA4 LINE L1 5602 6155 0 21 23 0 47 chr11 107183187 107183213 -41600259 + AT_rich Low_complexity Low_complexity 1 26 -15 475 179 21 0 chr11 107183213 107183308 -41600164 - L1PB4 LINE L1 -4 6152 6056 21 23 0 47 chr11 107183308 107183324 -41600148 + AT_rich Low_complexity Low_complexity 26 41 0 24 53 0 0 chr11 107190028 107190066 -41593406 + GC_rich Low_complexity Low_complexity 1 38 0 208 195 78 39 chr11 107191047 107191124 -41592348 + L3 LINE CR1 637 716 -861 22 0 0 0 chr11 107194249 107194271 -41589201 + AT_rich Low_complexity Low_complexity 1 22 0 22 80 0 0 chr11 107195286 107195336 -41588136 + AT_rich Low_complexity Low_complexity 1 50 0 252 333 61 20 chr11 107195906 107196005 -41587467 - MIR SINE MIR -88 120 18 216 281 0 0 chr11 107198074 107198138 -41585334 + (TAA)n Simple_repeat Simple_repeat 2 65 0 221 318 61 0 chr11 107198187 107198253 -41585219 + MIR SINE MIR 49 118 -144 245 299 56 28 chr11 107199301 107199408 -41584064 + MIR SINE MIR 83 192 -70 25 31 0 0 chr11 107199497 107199529 -41583943 + AT_rich Low_complexity Low_complexity 1 32 0 2348 48 0 54 chr11 107199971 107200287 -41583185 - AluY SINE Alu -12 299 1 30035 26 0 0 chr11 107200956 107205321 -41578151 - L1PA3 LINE L1 0 6155 1791 452 299 45 13 chr11 107205778 107205935 -41577537 - L1MC/D LINE L1 -2170 5638 5477 21 36 0 0 chr11 107205977 107206005 -41577467 + AT_rich Low_complexity Low_complexity 1 28 0 2043 113 55 0 chr11 107206759 107207052 -41576420 - AluSg1 SINE Alu 0 309 1 38 51 0 0 chr11 107207167 107207226 -41576246 + AT_rich Low_complexity Low_complexity 1 59 0 1192 128 34 75 chr11 107207465 107207731 -41575741 - L1MA5A LINE L1 0 6297 6043 1338 338 98 13 chr11 107208662 107209263 -41574209 - MER115 DNA AcHobo 0 693 42 694 264 119 4 chr11 107209361 107209588 -41573884 + MIR SINE MIR 16 262 0 1844 151 0 3 chr11 107210558 107210850 -41572622 + AluSx SINE Alu 3 293 -19 25 31 0 0 chr11 107211501 107211533 -41571939 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr11 107211941 107211970 -41571502 + AT_rich Low_complexity Low_complexity 1 29 0 319 304 183 0 chr11 107213579 107213694 -41569778 + MIR SINE MIR 3 138 -124 315 207 0 74 chr11 107214087 107214183 -41569289 + MER2 DNA MER2_type 1 89 -150 249 268 0 0 chr11 107214202 107214258 -41569214 + MER2 DNA MER2_type 290 345 0 22 0 0 0 chr11 107214342 107214364 -41569108 + AT_rich Low_complexity Low_complexity 1 22 0 230 253 11 33 chr11 107216628 107216719 -41566753 + (TATG)n Simple_repeat Simple_repeat 3 91 0 1270 212 111 9 chr11 107216794 107217110 -41566362 + MER7A DNA MER2_type 1 346 0 292 180 124 11 chr11 107219383 107219472 -41564000 - MER110A LTR ERV1 -291 177 79 622 251 159 0 chr11 107219484 107219647 -41563825 - MER5A DNA MER1_type 0 189 1 22 35 0 0 chr11 107220627 107220656 -41562816 + AT_rich Low_complexity Low_complexity 1 29 0 563 309 93 50 chr11 107222118 107222285 -41561187 - L2 LINE L2 -8 3305 3147 294 29 0 0 chr11 107222285 107222320 -41561152 + (TG)n Simple_repeat Simple_repeat 1 35 0 563 309 93 50 chr11 107222320 107222690 -41560782 - L2 LINE L2 -166 3147 2725 516 300 6 28 chr11 107222718 107222898 -41560574 - L2 LINE L2 -936 2378 2203 183 80 0 0 chr11 107222948 107222973 -41560499 + (TA)n Simple_repeat Simple_repeat 1 25 0 228 136 68 0 chr11 107223414 107223502 -41559970 + (TA)n Simple_repeat Simple_repeat 1 94 0 356 116 0 29 chr11 107223529 107223598 -41559874 + (TCCC)n Simple_repeat Simple_repeat 2 68 0 1621 199 0 3 chr11 107226208 107226504 -41556968 + AluJo SINE Alu 1 295 -17 569 209 29 14 chr11 107227144 107227283 -41556189 + MER97c DNA MER1_type? 32 172 -918 405 0 0 0 chr11 107228006 107228051 -41555421 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 21 0 0 0 chr11 107229339 107229360 -41554112 + AT_rich Low_complexity Low_complexity 1 21 0 33 85 0 0 chr11 107229415 107229497 -41553975 + AT_rich Low_complexity Low_complexity 1 82 0 1930 138 3 3 chr11 107230612 107230903 -41552569 - AluSx SINE Alu -20 292 2 848 291 39 66 chr11 107231181 107231638 -41551834 + LTR16B LTR ERVL 20 464 0 188 271 35 94 chr11 107232197 107232282 -41551190 + MIR3 SINE MIR 121 200 -8 1879 137 34 62 chr11 107232315 107232701 -41550771 + THE1C LTR MaLR 1 375 0 387 350 58 7 chr11 107234041 107234178 -41549294 + L2 LINE L2 3117 3260 -12 358 281 26 48 chr11 107234907 107235138 -41548334 - HAL1b LINE L1 -29 1319 1094 210 279 0 16 chr11 107235408 107235469 -41548003 + MER5B DNA MER1_type 4 63 -115 218 328 111 32 chr11 107235576 107235765 -41547707 - MIR SINE MIR -27 235 32 23 0 0 0 chr11 107236155 107236178 -41547294 + AT_rich Low_complexity Low_complexity 1 23 0 363 150 94 71 chr11 107236577 107236704 -41546768 + L1ME2 LINE L1 5917 6046 -118 1784 236 51 39 chr11 107237228 107237796 -41545676 - L1ME3 LINE L1 -6 6156 5582 6605 66 7 0 chr11 107237882 107238919 -41544553 - L1PA8 LINE L1 0 6172 5113 518 108 0 0 chr11 107238920 107238994 -41544478 + L1PA8 LINE L1 5019 5092 -1054 777 138 51 14 chr11 107239000 107239138 -41544334 - FLAM_C SINE Alu 0 143 1 189 195 0 24 chr11 107239257 107239298 -41544174 - L2 LINE L2 -4 3309 3270 28 0 0 0 chr11 107239702 107239730 -41543742 + AT_rich Low_complexity Low_complexity 1 28 0 1619 159 29 7 chr11 107240553 107240864 -41542608 + AluSx SINE Alu 1 317 0 198 118 0 0 chr11 107240946 107240980 -41542492 + (CA)n Simple_repeat Simple_repeat 1 34 0 1677 184 39 8 chr11 107242102 107242466 -41541006 + THE1C LTR MaLR 1 375 0 4626 122 14 21 chr11 107242823 107243595 -41539877 + L1MA3 LINE L1 5536 6302 -3 457 353 71 53 chr11 107244122 107244558 -41538914 + L2 LINE L2 2811 3254 -18 242 189 0 38 chr11 107245222 107245275 -41538197 - MLT1L LTR MaLR -564 51 1 575 263 103 12 chr11 107246382 107246625 -41536847 - MER20B DNA MER1_type -18 765 501 1972 101 3 10 chr11 107246690 107246987 -41536485 - AluSc SINE Alu -14 295 1 276 194 56 14 chr11 107247414 107247486 -41535986 + L1ME4a LINE L1 5977 6051 -70 216 0 0 0 chr11 107247538 107247562 -41535910 + (CA)n Simple_repeat Simple_repeat 2 25 0 255 337 41 0 chr11 107248875 107248973 -41534499 + L2 LINE L2 3208 3309 -4 2022 112 0 10 chr11 107249554 107249850 -41533622 - AluSg SINE Alu -17 293 1 29 28 0 0 chr11 107250203 107250239 -41533233 + AT_rich Low_complexity Low_complexity 1 36 0 631 227 0 30 chr11 107250258 107250390 -41533082 + Tigger3(Golem) DNA MER2_type 15 142 -2887 * 725 138 16 8 chr11 107250387 107250510 -41532962 + Tigger3(Golem) DNA MER2_type 2771 2894 -135 * 1521 189 88 3 chr11 107250501 107250807 -41532665 - MER6A DNA MER2_type -347 258 187 1470 151 85 4 chr11 107250807 107251078 -41532394 - MSTB LTR MaLR 0 426 134 456 219 0 0 chr11 107251085 107251167 -41532305 - MER6A DNA MER2_type -523 82 1 592 349 21 17 chr11 107251353 107251594 -41531878 - MIR SINE MIR -14 248 7 261 274 59 59 chr11 107251727 107251829 -41531643 - MIR SINE MIR -140 122 21 744 262 18 0 chr11 107252372 107252536 -41530936 + MER45A DNA AcHobo 1 167 -11 21 36 0 0 chr11 107253733 107253761 -41529711 + AT_rich Low_complexity Low_complexity 1 28 0 571 292 14 59 chr11 107253871 107254090 -41529382 - MIR SINE MIR -49 213 5 2582 36 0 0 chr11 107255246 107255549 -41527923 + AluY SINE Alu 1 303 -8 573 256 107 116 chr11 107255913 107256354 -41527118 - LTR33A LTR ERVL -86 437 1 236 371 51 0 chr11 107256376 107256554 -41526918 + MIR SINE MIR 76 262 0 391 316 96 21 chr11 107256967 107257249 -41526223 + L1ME4a LINE L1 5596 5898 -223 21 71 0 0 chr11 107257503 107257545 -41525927 + AT_rich Low_complexity Low_complexity 1 42 0 212 171 0 0 chr11 107257939 107257980 -41525492 + T-rich Low_complexity Low_complexity 1 41 0 195 195 24 0 chr11 107258331 107258372 -41525100 - MIR SINE MIR -130 132 91 1000 76 0 0 chr11 107259490 107259622 -41523850 - L1PA7 LINE L1 -3 6151 6020 21 0 0 0 chr11 107261158 107261179 -41522293 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr11 107263131 107263153 -41520319 + AT_rich Low_complexity Low_complexity 1 22 0 279 0 0 0 chr11 107264081 107264112 -41519360 + (CA)n Simple_repeat Simple_repeat 2 32 0 507 288 29 44 chr11 107264172 107264377 -41519095 + MIR SINE MIR 60 261 -1 213 121 0 0 chr11 107264750 107264783 -41518689 + (TC)n Simple_repeat Simple_repeat 2 34 0 22 35 0 0 chr11 107265250 107265279 -41518193 + AT_rich Low_complexity Low_complexity 1 29 0 2044 137 38 41 chr11 107265480 107265845 -41517627 - THE1B LTR MaLR 0 364 1 10709 119 12 1 chr11 107265845 107267408 -41516064 - THE1B-int LTR MaLR 0 1580 1 1969 155 16 43 chr11 107267408 107267782 -41515690 - THE1B LTR MaLR 0 364 1 869 278 53 53 chr11 107268117 107268584 -41514888 + MLT1C LTR MaLR 1 467 0 636 201 101 0 chr11 107268782 107268921 -41514551 - MER20 DNA MER1_type -2 217 65 1148 133 66 119 chr11 107268935 107269237 -41514235 + L1MA7 LINE L1 5997 6282 -9 780 226 15 20 chr11 107269276 107269475 -41513997 + MER96B DNA MER1_type? 2 199 -218 256 316 186 0 chr11 107269623 107269800 -41513672 + MIR SINE MIR 37 246 -16 2359 90 0 6 chr11 107272177 107272488 -41510984 + AluSc SINE Alu 1 309 0 225 221 0 44 chr11 107273551 107273619 -41509853 - L1MC4 LINE L1 -1338 6704 6640 275 289 14 14 chr11 107273619 107273761 -41509711 + (TA)n Simple_repeat Simple_repeat 2 143 0 241 323 32 24 chr11 107273898 107274022 -41509450 - MIR SINE MIR -60 202 78 215 384 65 55 chr11 107274480 107274865 -41508607 - L2 LINE L2 -52 3220 2832 423 192 39 135 chr11 107275351 107275507 -41507965 + MLT1I LTR MaLR 262 402 -7 626 266 44 0 chr11 107275606 107275764 -41507708 - MER45A DNA AcHobo 0 178 14 240 100 0 0 chr11 107275811 107275851 -41507621 + (TG)n Simple_repeat Simple_repeat 2 41 0 29 0 0 0 chr11 107276176 107276205 -41507267 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr11 107276980 107277008 -41506464 + AT_rich Low_complexity Low_complexity 1 28 0 546 386 28 15 chr11 107277861 107278185 -41505287 - LTR16C LTR ERVL -10 481 154 431 229 16 0 chr11 107278963 107279085 -41504387 + CT-rich Low_complexity Low_complexity 4 127 0 1706 231 6 6 chr11 107279413 107279776 -41503696 + MLT1A1 LTR MaLR 1 363 -2 226 315 87 60 chr11 107279780 107279964 -41503508 + MIR SINE MIR 47 235 -27 2243 108 0 3 chr11 107280052 107280366 -41503106 + AluSq SINE Alu 1 313 0 214 398 11 11 chr11 107281104 107281192 -41502280 - L2 LINE L2 -62 3210 3123 548 303 178 41 chr11 107281290 107281733 -41501739 - L2 LINE L2 -867 2447 1944 1952 273 48 33 chr11 107281806 107282155 -41501317 - L1ME3A LINE L1 -31 6139 5797 1523 166 48 69 chr11 107282155 107282534 -41500938 + MLT1A2 LTR MaLR 4 374 0 1952 273 48 33 chr11 107282534 107282950 -41500522 - L1ME3A LINE L1 -373 5797 5362 22 70 0 0 chr11 107283151 107283194 -41500278 + AT_rich Low_complexity Low_complexity 1 43 0 23 54 0 0 chr11 107283495 107283532 -41499940 + AT_rich Low_complexity Low_complexity 1 37 0 5289 127 22 6 chr11 107283715 107284766 -41498706 - L1PA13 LINE L1 -2 6161 5086 428 148 80 0 chr11 107284801 107284889 -41498583 + 7SK RNA RNA 29 123 -70 398 186 0 0 chr11 107284927 107284997 -41498475 + 7SK RNA RNA 121 190 -3 24 32 0 0 chr11 107285494 107285525 -41497947 + AT_rich Low_complexity Low_complexity 1 31 0 2076 136 7 0 chr11 107285699 107286008 -41497464 - AluSx SINE Alu -1 311 1 27 49 0 0 chr11 107286497 107286538 -41496934 + AT_rich Low_complexity Low_complexity 1 41 0 1162 76 0 6 chr11 107286567 107286724 -41496748 - L1PA5 LINE L1 -8 6146 5991 5272 134 35 0 chr11 107287121 107288217 -41495255 - L1PA15 LINE L1 -6 6810 5699 778 191 41 0 chr11 107289283 107289430 -41494042 - L1PA15 LINE L1 -20 6145 5993 * 5481 240 37 21 chr11 107289429 107289520 -41493952 - L1PA15 LINE L1 -1888 4909 4821 221 0 0 33 chr11 107289520 107289550 -41493922 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 5481 240 37 21 chr11 107289550 107291340 -41492132 - L1PA15 LINE L1 -1976 4821 1317 2403 283 45 35 chr11 107291370 107292178 -41491294 - L1PA15 LINE L1 -5971 816 1 199 211 22 0 chr11 107292331 107292421 -41491051 + (TA)n Simple_repeat Simple_repeat 2 93 0 28 71 0 0 chr11 107292421 107292477 -41490995 + AT_rich Low_complexity Low_complexity 1 56 0 207 217 0 33 chr11 107292586 107292646 -41490826 + CT-rich Low_complexity Low_complexity 3 60 0 2645 209 45 20 chr11 107293544 107294131 -41489341 - L1M2 LINE L1 -4647 2202 1594 2011 153 0 0 chr11 107294131 107294432 -41489040 - AluSx SINE Alu -11 301 1 2645 209 45 20 chr11 107294432 107294539 -41488933 - L1M2 LINE L1 -5255 1594 1491 381 284 25 41 chr11 107294825 107294994 -41488478 + MIR SINE MIR 57 221 -41 1669 191 3 0 chr11 107295788 107296070 -41487402 - AluJb SINE Alu -16 296 14 26 0 0 0 chr11 107296141 107296167 -41487305 + AT_rich Low_complexity Low_complexity 1 26 0 25 31 0 0 chr11 107297127 107297159 -41486313 + AT_rich Low_complexity Low_complexity 1 32 0 795 197 139 63 chr11 107297388 107297809 -41485663 - MER57A LTR ERV1 0 403 1 27 29 0 0 chr11 107297931 107297965 -41485507 + AT_rich Low_complexity Low_complexity 1 34 0 311 336 72 8 chr11 107298973 107299098 -41484374 + L2 LINE L2 3180 3312 -1 21 0 0 0 chr11 107299278 107299299 -41484173 + AT_rich Low_complexity Low_complexity 1 21 0 3567 214 27 2 chr11 107300238 107301049 -41482423 - L1P LINE L1 -1115 5682 4852 * 5268 212 19 8 chr11 107301044 107302234 -41481238 + L1P LINE L1 2997 4199 -1947 24173 181 13 20 chr11 107304656 107307550 -41475922 + L1P4 LINE L1 453 3307 -3176 2030 95 48 14 chr11 107307550 107307844 -41475628 + AluY SINE Alu 1 304 -7 24173 181 13 20 chr11 107307844 107310302 -41473170 + L1P4 LINE L1 3307 5780 -703 2823 42 89 5 chr11 107310897 107311280 -41472192 + L1PA7 LINE L1 5732 6146 -8 285 224 127 15 chr11 107311539 107311673 -41471799 - Tigger6b DNA MER2_type -1055 542 394 4631 255 38 28 chr11 107311677 107314529 -41468943 - L1PA13 LINE L1 -3775 3022 70 1836 225 45 21 chr11 107314548 107314975 -41468497 - Tigger6b DNA MER2_type -1160 437 1 309 315 65 65 chr11 107315423 107315823 -41467649 + L1ME LINE L1 5256 5650 -471 322 339 64 26 chr11 107317426 107317675 -41465797 + L2 LINE L2 2267 3001 -312 3363 107 20 2 chr11 107318363 107318869 -41464603 + L1PA10 LINE L1 5651 6165 -3 345 328 94 56 chr11 107318883 107319331 -41464141 + L1ME4a LINE L1 5438 5902 -219 213 214 0 36 chr11 107319658 107319714 -41463758 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 395 298 163 11 chr11 107319821 107320040 -41463432 - L2 LINE L2 -313 3000 2749 22 0 0 0 chr11 107320228 107320250 -41463222 + AT_rich Low_complexity Low_complexity 1 22 0 295 324 84 0 chr11 107320282 107320424 -41463048 + L2 LINE L2 3160 3313 0 608 157 0 112 chr11 107323406 107323540 -41459932 + FLAM_C SINE Alu 1 119 -24 22 35 0 0 chr11 107323971 107324000 -41459472 + AT_rich Low_complexity Low_complexity 1 29 0 2348 82 0 0 chr11 107324091 107324397 -41459075 + AluY SINE Alu 2 307 -4 327 358 30 8 chr11 107324699 107324833 -41458639 - L2 LINE L2 -16 3297 3161 210 282 173 18 chr11 107325444 107325554 -41457918 - L2 LINE L2 -10 3262 3136 233 311 114 36 chr11 107326037 107326204 -41457268 + MLT1J LTR MaLR 1 180 -331 481 305 16 26 chr11 107326303 107326493 -41456979 + MLT1J LTR MaLR 324 511 0 242 299 128 64 chr11 107328014 107328218 -41455254 - MLT1L LTR MaLR 0 615 399 1959 116 17 3 chr11 107328593 107328887 -41454585 + AluY SINE Alu 3 300 -11 180 158 0 0 chr11 107329216 107329254 -41454218 + T-rich Low_complexity Low_complexity 1 38 0 25 31 0 0 chr11 107330201 107330233 -41453239 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr11 107330361 107330383 -41453089 + AT_rich Low_complexity Low_complexity 1 22 0 209 365 0 0 chr11 107330956 107331030 -41452442 + MIR SINE MIR 70 143 -119 331 307 41 78 chr11 107331233 107331451 -41452021 - MLT1L LTR MaLR -205 410 201 23 0 0 0 chr11 107331750 107331773 -41451699 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr11 107332110 107332140 -41451332 + AT_rich Low_complexity Low_complexity 1 30 0 1587 181 0 26 chr11 107332562 107332865 -41450607 - AluJb SINE Alu -17 295 1 1831 108 3 61 chr11 107332903 107333223 -41450249 + AluSg SINE Alu 1 303 0 189 0 0 0 chr11 107333992 107334013 -41449459 + (TG)n Simple_repeat Simple_repeat 2 22 0 23 86 0 0 chr11 107334793 107334851 -41448621 + AT_rich Low_complexity Low_complexity 1 58 0 491 210 166 38 chr11 107334881 107335038 -41448434 - MIR SINE MIR -11 251 75 453 304 30 15 chr11 107335106 107335241 -41448231 + MIR3 SINE MIR 50 186 -22 180 222 32 48 chr11 107335673 107335736 -41447736 + L3 LINE CR1 972 1033 -544 242 380 40 13 chr11 107336817 107336967 -41446505 + MIR3 SINE MIR 17 170 -38 21 0 0 0 chr11 107337363 107337384 -41446088 + AT_rich Low_complexity Low_complexity 1 21 0 1889 134 87 29 chr11 107337603 107337947 -41445525 - THE1B LTR MaLR 0 364 1 360 296 58 12 chr11 107338034 107338206 -41445266 - MLT1J LTR MaLR -183 328 149 375 331 80 7 chr11 107338462 107338613 -41444859 - L2 LINE L2 -582 2732 2571 1848 140 4 4 chr11 107338737 107339016 -41444456 - AluSx SINE Alu -32 280 2 186 71 0 0 chr11 107339042 107339070 -41444402 + (TCTCTG)n Simple_repeat Simple_repeat 2 29 0 35 54 0 0 chr11 107339476 107339532 -41443940 + AT_rich Low_complexity Low_complexity 1 56 0 1616 203 3 13 chr11 107339671 107339986 -41443486 + AluJo SINE Alu 1 312 0 2174 281 100 59 chr11 107340771 107342119 -41441353 + L2 LINE L2 1880 3313 0 243 0 0 0 chr11 107342876 107342903 -41440569 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1466 213 46 0 chr11 107342918 107343034 -41440438 + AluJo SINE Alu 1 110 -202 486 0 0 0 chr11 107343034 107343088 -41440384 + (CA)n Simple_repeat Simple_repeat 1 54 0 1466 213 46 0 chr11 107343088 107343253 -41440219 + AluJo SINE Alu 110 295 -17 268 277 125 9 chr11 107343418 107343530 -41439942 + MIR3 SINE MIR 82 206 -2 2048 149 0 0 chr11 107343879 107344188 -41439284 + AluSx SINE Alu 1 309 -3 4003 101 2 35 chr11 107344774 107345405 -41438067 - LTR66 LTR ERVL 0 610 1 3767 95 4 3 chr11 107345406 107346081 -41437391 - HERVL66 LTR ERVL -1 4328 3569 4713 124 10 10 chr11 107346082 107346778 -41436694 - HERVL66 LTR ERVL -980 3349 2654 954 97 35 7 chr11 107346758 107346902 -41436570 - HERVL66 LTR ERVL -2532 1797 1650 * 22 35 0 0 chr11 107347576 107347605 -41435867 + AT_rich Low_complexity Low_complexity 1 29 0 227 237 51 17 chr11 107347709 107347768 -41435704 + L2 LINE L2 3210 3270 -2 658 361 109 32 chr11 107348096 107348876 -41434596 + L2 LINE L2 1866 2705 -609 258 387 51 16 chr11 107348967 107349223 -41434249 + L2 LINE L2 2839 3103 -169 216 143 0 0 chr11 107350015 107350050 -41433422 - L2 LINE L2 0 3313 3279 21 0 0 0 chr11 107350828 107350849 -41432623 + AT_rich Low_complexity Low_complexity 1 21 0 22 106 0 0 chr11 107352098 107352183 -41431289 + AT_rich Low_complexity Low_complexity 1 85 0 24 53 0 0 chr11 107352524 107352562 -41430910 + AT_rich Low_complexity Low_complexity 1 38 0 1336 253 67 42 chr11 107352642 107353208 -41430264 - L1MC4a LINE L1 -1799 6009 5430 28 29 0 0 chr11 107353323 107353358 -41430114 + AT_rich Low_complexity Low_complexity 1 35 0 8004 174 64 49 chr11 107353453 107353913 -41429559 - L1MA8 LINE L1 -7 6284 5833 236 169 0 70 chr11 107353913 107353984 -41429488 + LTR66 LTR ERVL 378 443 -167 8004 174 64 49 chr11 107353984 107356133 -41427339 - L1MA8 LINE L1 -458 5833 3571 2449 205 37 92 chr11 107356153 107357055 -41426417 + L1 LINE L1 2596 3447 -2699 276 301 85 37 chr11 107357929 107358175 -41425297 + L1MEd LINE L1 52 309 -5810 544 298 78 56 chr11 107358585 107358994 -41424478 + L1MEd LINE L1 730 1147 -4972 1981 135 3 0 chr11 107359328 107359624 -41423848 - AluSx SINE Alu -15 297 1 22 0 0 0 chr11 107359859 107359881 -41423591 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr11 107360546 107360589 -41422883 + AT_rich Low_complexity Low_complexity 1 43 0 677 316 13 0 chr11 107360627 107360852 -41422620 + HsTC2 DNA Tc2 1455 1682 -216 28 29 0 0 chr11 107361942 107361977 -41421495 + AT_rich Low_complexity Low_complexity 1 35 0 184 304 22 43 chr11 107362369 107362461 -41421011 + L2 LINE L2 2876 2965 -307 649 276 68 71 chr11 107364254 107364577 -41418895 - MLT1H LTR MaLR -204 345 24 282 29 0 0 chr11 107364682 107364717 -41418755 + (CAT)n Simple_repeat Simple_repeat 1 35 0 515 342 51 12 chr11 107365410 107365667 -41417805 + LTR16C LTR ERVL 188 454 -37 219 36 0 0 chr11 107365717 107365745 -41417727 + (TTCC)n Simple_repeat Simple_repeat 3 30 0 2143 100 13 3 chr11 107365745 107366044 -41417428 - AluSg SINE Alu -8 302 1 862 99 7 14 chr11 107366044 107366185 -41417287 + (TTCC)n Simple_repeat Simple_repeat 3 142 0 1445 231 42 60 chr11 107366218 107366698 -41416774 + MLT1D LTR MaLR 35 505 0 205 186 0 0 chr11 107367467 107367510 -41415962 + (TA)n Simple_repeat Simple_repeat 2 44 0 403 221 16 8 chr11 107367670 107367797 -41415675 + GA-rich Low_complexity Low_complexity 4 131 0 194 305 51 25 chr11 107367817 107367935 -41415537 - MIR SINE MIR -32 230 110 1857 113 7 34 chr11 107368328 107368619 -41414853 - AluSx SINE Alu -29 283 1 1572 152 10 35 chr11 107370246 107370556 -41412916 + L1MA9 LINE L1 6011 6312 0 300 235 10 39 chr11 107370563 107370665 -41412807 - HAL1 LINE L1 -821 1686 1588 27 100 0 0 chr11 107373714 107373804 -41409668 + AT_rich Low_complexity Low_complexity 1 90 0 2493 148 24 9 chr11 107373945 107374365 -41409107 - MSTB LTR MaLR 0 426 1 22 0 0 0 chr11 107375362 107375384 -41408088 + AT_rich Low_complexity Low_complexity 1 22 0 518 179 6 77 chr11 107375390 107375546 -41407926 - HAL1 LINE L1 -335 2172 2028 319 246 0 98 chr11 107375556 107375678 -41407794 + L2 LINE L2 3199 3308 -5 567 297 108 48 chr11 107375707 107376189 -41407283 - HAL1 LINE L1 -538 1969 1459 451 328 65 57 chr11 107376255 107377105 -41406367 - HAL1 LINE L1 -1244 1263 407 26 30 0 0 chr11 107377376 107377409 -41406063 + AT_rich Low_complexity Low_complexity 1 33 0 2194 101 0 0 chr11 107377633 107377920 -41405552 + AluY SINE Alu 3 289 -22 629 122 45 0 chr11 107377921 107378077 -41405395 + (TA)n Simple_repeat Simple_repeat 1 163 0 288 278 0 0 chr11 107378081 107378171 -41405301 - L1MC4 LINE L1 -1339 6703 6614 259 209 0 95 chr11 107378131 107378236 -41405236 + L1MC4 LINE L1 6614 6708 -1334 * 287 367 133 11 chr11 107378669 107379023 -41404449 - L2 LINE L2 -4 3268 2872 269 68 23 0 chr11 107379093 107379137 -41404335 + (TA)n Simple_repeat Simple_repeat 1 45 0 265 367 76 0 chr11 107379542 107379700 -41403772 - L3 LINE CR1 -42 1535 1366 222 380 120 37 chr11 107379837 107380053 -41403419 - L3 LINE CR1 -310 1267 1034 * 652 334 102 12 chr11 107380025 107380357 -41403115 - L2 LINE L2 -659 2655 2294 276 330 30 10 chr11 107380389 107380489 -41402983 + L2 LINE L2 1209 1310 -2004 3273 161 55 8 chr11 107380625 107381264 -41402208 - L1MA4 LINE L1 -19 6281 5613 1693 181 25 44 chr11 107381336 107381624 -41401848 + L1M1 LINE L1 4972 5264 -1041 2060 102 11 3 chr11 107381624 107381908 -41401564 + AluSc SINE Alu 1 286 -23 1693 181 25 44 chr11 107381908 107382243 -41401229 + L1M1 LINE L1 5264 5584 -721 1531 318 126 20 chr11 107382331 107383195 -41400277 + L2 LINE L2 1331 2286 -1028 379 250 0 10 chr11 107383195 107383291 -41400181 + MER94 DNA DNA 6 100 -34 918 319 121 2 chr11 107383365 107383820 -41399652 + MLT1J LTR MaLR 1 509 -2 932 293 69 73 chr11 107383836 107384565 -41398907 - L2 LINE L2 0 3313 2595 219 387 24 16 chr11 107384581 107384705 -41398767 + L2 LINE L2 2337 2461 -853 188 243 0 0 chr11 107385762 107385799 -41397673 - L2 LINE L2 -540 2774 2738 24 0 0 0 chr11 107385935 107385959 -41397513 + AT_rich Low_complexity Low_complexity 1 24 0 194 105 26 0 chr11 107387029 107387067 -41396405 + GA-rich Low_complexity Low_complexity 3 41 0 22 0 0 0 chr11 107387418 107387440 -41396032 + AT_rich Low_complexity Low_complexity 1 22 0 269 135 19 0 chr11 107387879 107387931 -41395541 + (CCTAT)n Simple_repeat Simple_repeat 4 56 0 756 336 80 10 chr11 107388276 107388663 -41394809 - L3 LINE CR1 -2 1575 1162 777 127 16 0 chr11 107389379 107389505 -41393967 - AluSg/x SINE Alu -10 302 175 238 317 0 0 chr11 107389511 107389571 -41393901 + LTR16A LTR ERVL 160 219 -231 410 362 132 10 chr11 107389572 107389973 -41393499 - L2 LINE L2 -844 2470 2021 236 213 27 27 chr11 107390072 107390147 -41393325 + (TTTG)n Simple_repeat Simple_repeat 2 76 0 199 310 71 76 chr11 107391578 107391762 -41391710 + MIR SINE MIR 74 256 -6 2102 122 0 3 chr11 107391800 107392104 -41391368 + AluSg SINE Alu 1 303 -7 369 308 132 47 chr11 107392553 107392917 -41390555 - L1ME4a LINE L1 -142 5979 5585 1782 138 36 18 chr11 107393017 107393350 -41390122 + L1MA4A LINE L1 5960 6298 -5 24 32 0 0 chr11 107393386 107393417 -41390055 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr11 107394894 107394920 -41388552 + AT_rich Low_complexity Low_complexity 1 26 0 7174 155 1 2 chr11 107395385 107397392 -41386080 - L1PA10 LINE L1 -11 6157 4136 2130 89 4 0 chr11 107398388 107398694 -41384778 + AluY SINE Alu 1 307 0 299 111 0 0 chr11 107398723 107398768 -41384704 + L1MA4A LINE L1 6132 6176 -127 373 116 15 66 chr11 107398901 107399009 -41384463 + L1MA4A LINE L1 5931 6041 -263 248 308 26 13 chr11 107399092 107399170 -41384302 + L2 LINE L2 3184 3262 -10 53 49 0 0 chr11 107399423 107399504 -41383968 + AT_rich Low_complexity Low_complexity 1 81 0 22 0 0 0 chr11 107400690 107400712 -41382760 + AT_rich Low_complexity Low_complexity 1 22 0 357 43 0 0 chr11 107401174 107401221 -41382251 + (CA)n Simple_repeat Simple_repeat 2 48 0 348 343 36 7 chr11 107401247 107401387 -41382085 + MIR SINE MIR 50 193 -69 1969 132 3 3 chr11 107402123 107402418 -41381054 + AluSc SINE Alu 1 295 -14 182 219 0 0 chr11 107402421 107402453 -41381019 - L2 LINE L2 -19 3294 3263 23 0 0 0 chr11 107403866 107403889 -41379583 + AT_rich Low_complexity Low_complexity 1 23 0 2580 20 0 7 chr11 107404376 107404679 -41378793 + AluY SINE Alu 1 301 -10 204 277 0 0 chr11 107405261 107405308 -41378164 + CT-rich Low_complexity Low_complexity 3 49 0 198 0 0 0 chr11 107406041 107406063 -41377409 + (T)n Simple_repeat Simple_repeat 1 22 0 255 263 13 13 chr11 107406467 107406543 -41376929 - MER103 DNA DNA -50 116 41 210 71 0 0 chr11 107406644 107406672 -41376800 + (CA)n Simple_repeat Simple_repeat 1 28 0 248 130 0 22 chr11 107407151 107407197 -41376275 + L2 LINE L2 3171 3215 -98 4927 198 34 6 chr11 107407201 107409090 -41374382 - L1PA16 LINE L1 0 6166 4242 261 375 48 12 chr11 107409345 107409513 -41373959 + MER5A DNA MER1_type 10 183 -6 2052 115 3 14 chr11 107410049 107410344 -41373128 - AluSq SINE Alu -21 292 1 1029 203 28 46 chr11 107410468 107410685 -41372787 - MER20 DNA MER1_type -6 213 1 225 0 0 0 chr11 107412177 107412202 -41371270 + (TTA)n Simple_repeat Simple_repeat 3 27 0 9261 35 0 3 chr11 107412202 107414088 -41369384 - L1PA4 LINE L1 -18 6137 4255 252 310 70 16 chr11 107414288 107414417 -41369055 - MIR SINE MIR -15 247 112 212 77 26 0 chr11 107417050 107417089 -41366383 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 380 347 31 22 chr11 107417268 107417493 -41365979 - L1ME LINE L1 -609 5555 5329 365 275 139 75 chr11 107417702 107417755 -41365717 - L1ME LINE L1 -1300 4846 4798 1954 144 36 33 chr11 107417755 107418116 -41365356 + THE1B LTR MaLR 1 362 -2 365 275 139 75 chr11 107418116 107418393 -41365079 - L1ME LINE L1 -1348 4798 4495 227 353 63 0 chr11 107418394 107418601 -41364871 - L1ME LINE L1 -1703 4443 4224 249 83 0 0 chr11 107418614 107418650 -41364822 + (TA)n Simple_repeat Simple_repeat 2 37 0 31 0 0 0 chr11 107420206 107420237 -41363235 + AT_rich Low_complexity Low_complexity 1 31 0 32 26 0 0 chr11 107420458 107420497 -41362975 + AT_rich Low_complexity Low_complexity 1 39 0 459 141 0 0 chr11 107420497 107420575 -41362897 + (CA)n Simple_repeat Simple_repeat 2 79 0 187 328 33 0 chr11 107421727 107421788 -41361684 - MIR SINE MIR -153 109 47 22 35 0 0 chr11 107422292 107422321 -41361151 + AT_rich Low_complexity Low_complexity 1 29 0 1798 107 26 0 chr11 107422871 107423141 -41360331 - L1PA13 LINE L1 -1 6162 5886 22 0 0 0 chr11 107423570 107423592 -41359880 + AT_rich Low_complexity Low_complexity 1 22 0 396 316 134 29 chr11 107424438 107424864 -41358608 - L1MC/D LINE L1 -748 5398 5127 22 56 0 0 chr11 107424977 107425013 -41358459 + AT_rich Low_complexity Low_complexity 1 36 0 217 278 206 22 chr11 107425395 107425581 -41357891 + MIR SINE MIR 6 216 -46 304 365 88 5 chr11 107426854 107427046 -41356426 + MIR SINE MIR 18 225 -37 231 195 0 0 chr11 107427315 107427356 -41356116 + CT-rich Low_complexity Low_complexity 3 43 0 1018 188 14 39 chr11 107428348 107428556 -41354916 - AluJb SINE Alu -18 294 92 43 47 0 0 chr11 107428908 107428972 -41354500 + AT_rich Low_complexity Low_complexity 1 64 0 24 67 0 0 chr11 107429053 107429098 -41354374 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr11 107430411 107430434 -41353038 + AT_rich Low_complexity Low_complexity 1 23 0 180 77 0 0 chr11 107430910 107430936 -41352536 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 467 149 0 0 chr11 107430953 107431040 -41352432 - MER2 DNA MER2_type -136 209 123 1542 213 0 10 chr11 107431042 107431333 -41352139 + AluJo SINE Alu 1 288 -24 395 194 11 32 chr11 107431425 107431518 -41351954 - MER2 DNA MER2_type -228 117 27 456 19 0 0 chr11 107432631 107432684 -41350788 + (CA)n Simple_repeat Simple_repeat 2 54 0 309 309 12 0 chr11 107432783 107432867 -41350605 + MIR SINE MIR 47 131 -131 36 82 0 0 chr11 107433100 107433185 -41350287 + AT_rich Low_complexity Low_complexity 1 85 0 328 198 25 0 chr11 107434872 107434953 -41348519 - L1MA6 LINE L1 0 6300 6218 315 293 121 17 chr11 107435677 107435793 -41347679 + L2 LINE L2 3186 3313 0 1864 273 35 6 chr11 107436217 107436708 -41346764 - MLT1F1 LTR MaLR -8 559 55 538 342 40 4 chr11 107436745 107436973 -41346499 - MIR SINE MIR -26 236 1 467 278 43 0 chr11 107437153 107437268 -41346204 - FLAM_A SINE Alu -22 120 1 33 66 0 0 chr11 107437268 107437329 -41346143 + AT_rich Low_complexity Low_complexity 1 61 0 1010 174 0 41 chr11 107438693 107438888 -41344584 - MER3 DNA MER1_type -21 188 2 386 257 211 12 chr11 107439433 107439604 -41343868 + MIR SINE MIR 49 253 -9 27 62 0 0 chr11 107439807 107439855 -41343617 + AT_rich Low_complexity Low_complexity 1 48 0 224 349 0 0 chr11 107440137 107440200 -41343272 + L2 LINE L2 3250 3312 -1 751 267 102 51 chr11 107440224 107440699 -41342773 - MLT1H LTR MaLR -7 542 1 297 290 11 0 chr11 107440810 107440903 -41342569 + LTR33 LTR ERVL 428 521 0 23 33 0 0 chr11 107441081 107441111 -41342361 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr11 107441174 107441197 -41342275 + AT_rich Low_complexity Low_complexity 1 23 0 421 281 197 6 chr11 107441197 107441375 -41342097 + MIR SINE MIR 49 260 -2 238 213 125 12 chr11 107442937 107443017 -41340455 - MIR SINE MIR -10 252 164 204 143 0 0 chr11 107443246 107443288 -41340184 + (ATG)n Simple_repeat Simple_repeat 2 43 0 282 359 118 0 chr11 107443300 107443470 -41340002 - MIR SINE MIR -16 246 57 263 346 25 44 chr11 107444825 107444984 -41338488 - L2 LINE L2 0 3313 3158 552 293 159 73 chr11 107445119 107446027 -41337445 + L1MEd LINE L1 272 1257 -4862 351 282 118 9 chr11 107446067 107446177 -41337295 + MER96 DNA MER1_type? 5 126 -49 311 218 89 10 chr11 107446207 107446308 -41337164 - MER96 DNA MER1_type? -51 124 16 254 209 60 15 chr11 107447438 107447505 -41335967 - MLT1J LTR MaLR -19 492 423 192 200 0 0 chr11 107448106 107448146 -41335326 + (CA)n Simple_repeat Simple_repeat 1 40 0 218 189 0 0 chr11 107448986 107449023 -41334449 + (CA)n Simple_repeat Simple_repeat 2 38 0 587 14 14 0 chr11 107449326 107449398 -41334074 + (TG)n Simple_repeat Simple_repeat 1 73 0 35 24 0 0 chr11 107449727 107449769 -41333703 + AT_rich Low_complexity Low_complexity 1 42 0 2216 118 0 0 chr11 107450481 107450785 -41332687 + AluSx SINE Alu 1 304 -8 440 204 21 0 chr11 107451737 107451830 -41331642 + L3 LINE CR1 1189 1283 -294 181 362 112 9 chr11 107451836 107451952 -41331520 + L3 LINE CR1 1426 1553 -24 352 314 10 0 chr11 107452556 107452658 -41330814 + GA-rich Low_complexity Low_complexity 3 105 0 211 303 114 40 chr11 107453743 107453918 -41329554 + MIR SINE MIR 59 246 -16 24 0 0 0 chr11 107454472 107454496 -41328976 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr11 107456940 107456968 -41326504 + AT_rich Low_complexity Low_complexity 1 28 0 843 169 52 0 chr11 107457150 107457304 -41326168 - L1 LINE L1 -1941 4205 4044 30 0 0 0 chr11 107457370 107457400 -41326072 + AT_rich Low_complexity Low_complexity 1 30 0 1033 144 0 0 chr11 107457605 107457758 -41325714 - MER57-int LTR ERV1 -1194 6343 6191 4942 202 36 12 chr11 107457758 107458955 -41324517 - L1 LINE L1 -2097 4049 2824 1603 213 18 13 chr11 107458960 107459355 -41324117 + L1 LINE L1 4202 4598 -1548 9483 122 49 4 chr11 107459628 107460321 -41323151 - MER57B-int LTR ERV1 -404 7133 6472 2788 16 0 0 chr11 107460321 107460632 -41322840 + AluYb8 SINE Alu 1 311 -7 9483 122 49 4 chr11 107460632 107461369 -41322103 - MER57B-int LTR ERV1 -1065 6472 5639 334 151 91 0 chr11 107461363 107461454 -41322018 - MER57B-int LTR ERV1 -3236 2710 2167 * 2020 142 67 4 chr11 107461450 107461957 -41321515 - MER57B-int LTR ERV1 -3929 2017 1374 1903 139 13 3 chr11 107461947 107462248 -41321224 - MER57B-int LTR ERV1 -5355 591 288 * 4180 138 20 3 chr11 107462245 107462891 -41320581 - MER57B-int LTR ERV1 -6865 672 16 2777 122 16 2 chr11 107462894 107463322 -41320150 - MER57B LTR ERV1 0 434 1 321 146 18 0 chr11 107463325 107463380 -41320092 + L1M4 LINE L1 738 793 -5487 1844 154 20 5 chr11 107463380 107463818 -41319654 + LTR19A LTR ERV1 1 480 -6 1476 220 22 36 chr11 107463840 107464290 -41319182 + L1M4 LINE L1 794 1237 -5043 2896 156 25 21 chr11 107464292 107464823 -41318649 - L1PB4 LINE L1 -170 5986 5454 2363 185 12 4 chr11 107464824 107465306 -41318166 - L1PB4 LINE L1 -1973 4173 3688 * 3322 252 61 30 chr11 107465300 107467197 -41316275 + L1M4 LINE L1 1580 3629 -2753 339 234 169 19 chr11 107467191 107467235 -41316237 + L1MB7 LINE L1 5993 6029 -155 * 559 240 7 0 chr11 107467235 107467389 -41316083 - L1MA4 LINE L1 -6 6294 6140 339 234 169 19 chr11 107467389 107467498 -41315974 + L1MB7 LINE L1 6029 6169 -15 34 24 0 0 chr11 107467619 107467660 -41315812 + AT_rich Low_complexity Low_complexity 1 41 0 2119 126 0 0 chr11 107470425 107470726 -41312746 + AluSx SINE Alu 1 301 -11 401 304 108 0 chr11 107470918 107471076 -41312396 + MIR SINE MIR 5 179 -83 965 54 0 0 chr11 107471349 107471511 -41311961 + AluY SINE Alu 171 284 -27 424 145 0 0 chr11 107471513 107471589 -41311883 - L1MB2 LINE L1 -8 6163 6088 188 33 0 33 chr11 107472081 107472111 -41311361 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 291 325 33 0 chr11 107473540 107473691 -41309781 - L1MDb LINE L1 -5059 1885 1730 252 207 61 12 chr11 107473758 107473840 -41309632 - L1MDb LINE L1 -4926 1497 1412 27 87 0 0 chr11 107474500 107474569 -41308903 + AT_rich Low_complexity Low_complexity 1 69 0 311 267 48 0 chr11 107474781 107474886 -41308586 + L1MA10 LINE L1 6216 6325 -9 502 304 38 4 chr11 107475275 107475512 -41307960 - L1ME2 LINE L1 -27 6137 5893 481 279 53 65 chr11 107475565 107475666 -41307806 - L1M4 LINE L1 -2209 4748 4647 2101 108 10 0 chr11 107475666 107475954 -41307518 - AluSg SINE Alu -19 291 1 481 279 53 65 chr11 107475954 107476174 -41307298 - L1M4 LINE L1 -2310 4647 4431 392 264 85 0 chr11 107476179 107476285 -41307187 - L1M4 LINE L1 -6732 127 13 21 57 0 0 chr11 107476901 107476936 -41306536 + AT_rich Low_complexity Low_complexity 1 35 0 307 319 42 0 chr11 107477051 107477170 -41306302 + MIR SINE MIR 68 191 -71 302 278 41 31 chr11 107477379 107477476 -41305996 + MIR SINE MIR 165 262 0 22 56 0 0 chr11 107478092 107478128 -41305344 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr11 107478411 107478440 -41305032 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr11 107478843 107478865 -41304607 + AT_rich Low_complexity Low_complexity 1 22 0 268 316 0 13 chr11 107479428 107479504 -41303968 + GA-rich Low_complexity Low_complexity 3 77 0 381 170 0 125 chr11 107479659 107479771 -41303701 - MER5A DNA MER1_type -83 106 9 222 343 121 20 chr11 107483003 107483102 -41300370 - MIR SINE MIR -81 127 19 337 358 56 78 chr11 107484086 107484354 -41299118 + L2 LINE L2 2991 3252 -20 31 0 0 0 chr11 107484414 107484445 -41299027 + AT_rich Low_complexity Low_complexity 1 31 0 262 364 125 41 chr11 107484454 107484702 -41298770 - L2 LINE L2 -591 2723 2497 1843 133 3 11 chr11 107484702 107484988 -41298484 + AluSx SINE Alu 18 301 -11 262 364 125 41 chr11 107484988 107485404 -41298068 - L2 LINE L2 -817 2497 2003 1156 232 59 103 chr11 107485490 107486034 -41297438 + MLT2B1 LTR ERVL 1 520 0 252 77 58 0 chr11 107486046 107486098 -41297374 + (TA)n Simple_repeat Simple_repeat 1 55 0 483 275 7 14 chr11 107486486 107486628 -41296844 - ERVL LTR ERVL -1476 4288 4148 955 172 27 84 chr11 107486795 107487056 -41296416 - MLT1B LTR MaLR 0 390 145 285 314 9 9 chr11 107488210 107488315 -41295157 - MIR SINE MIR 0 262 158 366 304 26 0 chr11 107488577 107488692 -41294780 + GA-rich Low_complexity Low_complexity 3 120 0 256 274 0 0 chr11 107488785 107488858 -41294614 + MER116 DNA Mariner 1 73 -7 1854 61 4 0 chr11 107489436 107489666 -41293806 - AluY SINE Alu -80 231 1 26 0 0 0 chr11 107489674 107489700 -41293772 + AT_rich Low_complexity Low_complexity 1 26 0 26 0 0 0 chr11 107489840 107489866 -41293606 + AT_rich Low_complexity Low_complexity 1 26 0 188 269 129 21 chr11 107492949 107493042 -41290430 + L3 LINE CR1 1300 1402 -175 2320 110 3 0 chr11 107493315 107493623 -41289849 + AluSp SINE Alu 1 309 -4 333 0 0 0 chr11 107494639 107494676 -41288796 + (CA)n Simple_repeat Simple_repeat 2 38 0 544 174 13 20 chr11 107494828 107494977 -41288495 + GA-rich Low_complexity Low_complexity 4 151 0 25 65 0 0 chr11 107495565 107495611 -41287861 + AT_rich Low_complexity Low_complexity 1 46 0 339 154 0 0 chr11 107495648 107495713 -41287759 + (CA)n Simple_repeat Simple_repeat 2 66 0 236 280 27 13 chr11 107495748 107495823 -41287649 + L1 LINE L1 4501 4576 -1570 388 292 80 61 chr11 107495858 107496221 -41287251 + L1 LINE L1 4758 5127 -1019 558 253 88 60 chr11 107496426 107496830 -41286642 + MLT1H LTR MaLR 30 547 -2 21 95 0 0 chr11 107498243 107498306 -41285166 + AT_rich Low_complexity Low_complexity 1 63 0 198 0 0 0 chr11 107498688 107498710 -41284762 + (CA)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr11 107498723 107498745 -41284727 + AT_rich Low_complexity Low_complexity 1 22 0 459 209 35 0 chr11 107499106 107499221 -41284251 + L1MA6 LINE L1 6182 6300 0 201 121 0 0 chr11 107499230 107499263 -41284209 + (CA)n Simple_repeat Simple_repeat 2 34 0 1018 169 58 8 chr11 107499315 107499557 -41283915 + MER33 DNA MER1_type 2 255 -69 193 323 15 15 chr11 107499936 107500001 -41283471 - MIR SINE MIR -184 78 14 384 314 49 79 chr11 107500178 107500544 -41282928 - LTR16C LTR ERVL -48 443 89 1981 130 41 0 chr11 107501269 107501561 -41281911 + AluSx SINE Alu 1 304 -8 3127 122 47 4 chr11 107501950 107502440 -41281032 - MER9 LTR ERVK 0 511 1 326 221 26 13 chr11 107503626 107503703 -41279769 + L1MC4 LINE L1 6628 6705 -1337 * 336 235 0 82 chr11 107503650 107503748 -41279724 - L1MC4 LINE L1 -1339 6703 6614 928 71 16 0 chr11 107503812 107503938 -41279534 + L1MA1 LINE L1 6175 6302 0 438 305 82 79 chr11 107503949 107504252 -41279220 - L2 LINE L2 -81 3232 2933 2296 79 0 10 chr11 107504252 107504556 -41278916 + AluY SINE Alu 1 301 -10 438 305 82 79 chr11 107504556 107504791 -41278681 - L2 LINE L2 -380 2933 2700 803 299 120 56 chr11 107504795 107505478 -41277994 - L2 LINE L2 -805 2509 1783 22 35 0 0 chr11 107505510 107505539 -41277933 + AT_rich Low_complexity Low_complexity 1 29 0 369 351 71 0 chr11 107506205 107506359 -41277113 + MIR SINE MIR 26 190 -72 2435 77 0 6 chr11 107509201 107509514 -41273958 - AluY SINE Alu 0 311 1 189 273 0 0 chr11 107509693 107509737 -41273735 - MIR SINE MIR -1 261 218 894 94 0 0 chr11 107511266 107511433 -41272039 + AluSg/x SINE Alu 155 321 0 846 88 0 0 chr11 107511567 107511680 -41271792 - AluY SINE Alu -179 132 20 1313 121 25 0 chr11 107511692 107511891 -41271581 + AluSc SINE Alu 102 305 -4 25 31 0 0 chr11 107511976 107512008 -41271464 + AT_rich Low_complexity Low_complexity 1 32 0 984 176 5 42 chr11 107512576 107512769 -41270703 - MLT1A1 LTR MaLR -177 188 3 411 275 0 0 chr11 107512771 107512862 -41270610 - MLT1A1-int LTR MaLR 0 1735 1645 232 190 51 0 chr11 107512863 107512942 -41270530 + (TA)n Simple_repeat Simple_repeat 2 84 0 5763 216 76 64 chr11 107512942 107513236 -41270236 - MLT1A1-int LTR MaLR -82 1653 1364 805 143 0 0 chr11 107513236 107513362 -41270110 + L1MA3 LINE L1 6180 6305 0 5763 216 76 64 chr11 107513362 107514573 -41268899 - MLT1A1-int LTR MaLR -371 1364 130 277 130 22 0 chr11 107514600 107514646 -41268826 + MSTB2 LTR MaLR 409 455 -2 3786 214 45 35 chr11 107514785 107515440 -41268032 - L1MB4 LINE L1 -8 6172 5525 180 77 0 0 chr11 107515440 107515466 -41268006 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 3786 214 45 35 chr11 107515466 107516574 -41266898 - L1MB4 LINE L1 -655 5525 4397 21 0 0 0 chr11 107518003 107518024 -41265448 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr11 107518187 107518219 -41265253 + AT_rich Low_complexity Low_complexity 1 32 0 1113 179 69 55 chr11 107518256 107518558 -41264914 + AluJb SINE Alu 4 309 0 227 0 91 0 chr11 107518760 107518793 -41264679 + A-rich Low_complexity Low_complexity 5 40 0 669 284 67 35 chr11 107518875 107519188 -41264284 + L3 LINE CR1 1065 1387 -190 199 274 0 48 chr11 107519239 107519301 -41264171 + L3 LINE CR1 1516 1574 -3 236 208 0 19 chr11 107519548 107519601 -41263871 + MER116 DNA Mariner 26 77 -3 199 325 88 18 chr11 107521313 107521427 -41262045 - MIR SINE MIR -90 172 51 1613 205 30 22 chr11 107522424 107522795 -41260677 + MLT1A2 LTR MaLR 1 374 0 322 300 42 8 chr11 107522881 107523001 -41260471 - L3 LINE CR1 -326 1251 1128 29 84 0 0 chr11 107523807 107523878 -41259594 + AT_rich Low_complexity Low_complexity 1 71 0 1891 59 0 17 chr11 107523913 107524150 -41259322 + AluY SINE Alu 56 288 -23 504 244 44 76 chr11 107524693 107524918 -41258554 - L2 LINE L2 -7 3306 3089 272 143 0 0 chr11 107524956 107524998 -41258474 + 5S rRNA rRNA 1 42 -79 1894 252 26 26 chr11 107526039 107526647 -41256825 + L1ME2 LINE L1 5421 6028 -136 1497 81 10 0 chr11 107526819 107527028 -41256444 + L1PA7 LINE L1 5941 6151 -3 306 396 30 25 chr11 107527092 107527289 -41256183 - MIR SINE MIR -35 227 30 357 43 0 0 chr11 107529121 107529168 -41254304 + (TA)n Simple_repeat Simple_repeat 1 47 0 489 48 0 0 chr11 107529173 107529235 -41254237 - L1PA5 LINE L1 -8 6146 6085 270 263 167 18 chr11 107529330 107529444 -41254028 - L2 LINE L2 -327 2986 2856 3609 161 21 30 chr11 107529508 107530215 -41253257 - MER67C LTR ERV1 0 710 10 418 319 147 0 chr11 107530241 107530398 -41253074 - MER5A DNA MER1_type -1 188 9 1687 166 22 54 chr11 107530566 107530934 -41252538 - MER44D DNA MER2_type -4 601 191 6603 205 132 30 chr11 107530934 107532526 -41250946 - MER52A LTR ERV1 0 1755 1 9643 168 64 53 chr11 107532526 107534093 -41249379 - MER4C-int LTR ERV1 -1573 5025 3476 2295 101 0 0 chr11 107534093 107534401 -41249071 + AluY SINE Alu 1 308 -3 9643 168 64 53 chr11 107534401 107534886 -41248586 - MER4C-int LTR ERV1 -3122 3476 2998 1754 190 3 3 chr11 107534886 107535196 -41248276 + AluJb SINE Alu 1 310 -2 9643 168 64 53 chr11 107535196 107536843 -41246629 - MER4C-int LTR ERV1 -3600 2998 1260 237 237 0 0 chr11 107536963 107537022 -41246450 + (TA)n Simple_repeat Simple_repeat 2 60 0 209 122 24 0 chr11 107537067 107537108 -41246364 + (TA)n Simple_repeat Simple_repeat 1 42 0 328 159 48 0 chr11 107537124 107537187 -41246285 - MER4C-int LTR ERV1 -4661 1670 1605 205 240 0 20 chr11 107537187 107537237 -41246235 + (TA)n Simple_repeat Simple_repeat 1 49 0 323 77 21 0 chr11 107537282 107537338 -41246134 - MER4C-int LTR ERV1 -3932 2014 510 350 208 117 0 chr11 107537421 107537498 -41245974 - MER4C-int LTR ERV1 -5638 960 875 255 260 27 14 chr11 107537500 107537573 -41245899 - LTR49 LTR ERV1 -260 335 262 2085 167 50 30 chr11 107537707 107538276 -41245196 - MER4C-int LTR ERV1 -5912 686 1 1205 139 19 19 chr11 107538283 107538498 -41244974 - MER4C LTR ERV1 -3 462 248 * 1684 149 65 3 chr11 107538497 107538806 -41244666 - MER4C LTR ERV1 -137 328 1 255 323 11 11 chr11 107538814 107538907 -41244565 - L2 LINE L2 -864 2450 2358 273 338 22 22 chr11 107539233 107539369 -41244103 - L2 LINE L2 -563 2751 2616 532 302 35 54 chr11 107539441 107539699 -41243773 + MIR SINE MIR 10 262 0 186 373 22 30 chr11 107539682 107539816 -41243656 - MIR3 SINE MIR -71 137 5 * 216 0 0 0 chr11 107539912 107539936 -41243536 + (CATTT)n Simple_repeat Simple_repeat 4 27 0 268 385 48 0 chr11 107540041 107540145 -41243327 + L2 LINE L2 3160 3268 -4 21 36 0 0 chr11 107542582 107542610 -41240862 + AT_rich Low_complexity Low_complexity 1 28 0 737 158 8 23 chr11 107542725 107542858 -41240614 + FLAM_C SINE Alu 3 133 0 867 166 82 228 chr11 107543132 107543729 -41239743 - MER67D LTR ERV1 -4 510 1 30 27 0 0 chr11 107543922 107543959 -41239513 + AT_rich Low_complexity Low_complexity 1 37 0 432 294 59 0 chr11 107544108 107544227 -41239245 - L2 LINE L2 -5 3308 3183 328 272 92 96 chr11 107544639 107544889 -41238583 + MARNA DNA Mariner 133 381 -205 1991 120 0 0 chr11 107547291 107547575 -41235897 + AluSq SINE Alu 1 284 -29 2277 96 10 0 chr11 107547796 107548099 -41235373 + AluSp SINE Alu 1 306 -7 21 0 0 0 chr11 107548197 107548218 -41235254 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr11 107548626 107548654 -41234818 + AT_rich Low_complexity Low_complexity 1 28 0 2014 75 4 8 chr11 107548803 107549069 -41234403 + AluY SINE Alu 38 302 -9 2183 128 0 0 chr11 107549385 107549691 -41233781 + AluSx SINE Alu 1 306 -6 236 229 16 0 chr11 107549908 107549969 -41233503 - MLT1G1 LTR MaLR -10 585 524 483 263 100 23 chr11 107550065 107550300 -41233172 - MLT1H LTR MaLR -256 293 1 354 253 7 20 chr11 107550583 107550704 -41232768 - MLT1I LTR MaLR 0 549 278 936 268 25 89 chr11 107551266 107551747 -41231725 - MER90 LTR ERV1 -45 569 120 247 357 82 31 chr11 107552725 107552921 -41230551 + L3 LINE CR1 1368 1573 -4 190 322 82 65 chr11 107553387 107553632 -41229840 + L2 LINE L2 3065 3313 0 338 220 0 4 chr11 107554175 107554247 -41229225 + AluJ/monomer SINE Alu 1 53 -249 294 292 9 18 chr11 107554259 107554372 -41229100 + (TA)n Simple_repeat Simple_repeat 2 113 0 369 246 0 0 chr11 107554372 107554437 -41229035 + Tigger3(Golem) DNA MER2_type 2 66 -2963 329 43 21 0 chr11 107554439 107554486 -41228986 + (TG)n Simple_repeat Simple_repeat 2 49 0 2132 125 6 0 chr11 107554852 107555163 -41228309 + AluSq SINE Alu 1 313 0 469 365 6 11 chr11 107555285 107555463 -41228009 + MER5B DNA MER1_type 1 177 -1 192 399 63 14 chr11 107555647 107555790 -41227682 - L2 LINE L2 -225 3047 2898 2322 97 0 0 chr11 107556924 107557233 -41226239 - AluSg SINE Alu -1 309 1 23 0 0 0 chr11 107557744 107557767 -41225705 + AT_rich Low_complexity Low_complexity 1 23 0 947 97 103 0 chr11 107558839 107559014 -41224458 - L1MA7 LINE L1 -8 6283 6091 680 209 36 45 chr11 107559195 107559418 -41224054 - L1MA8 LINE L1 -106 6185 5982 3788 82 6 0 chr11 107560277 107560776 -41222696 - MER41A LTR ERV1 0 554 53 221 386 55 43 chr11 107561741 107561892 -41221580 + L2 LINE L2 2817 2974 -298 686 246 18 6 chr11 107561892 107562063 -41221409 + MER5B DNA MER1_type 2 174 -4 221 386 55 43 chr11 107562063 107562165 -41221307 + L2 LINE L2 2974 3073 -199 2199 114 3 0 chr11 107562185 107562483 -41220989 + AluSx SINE Alu 1 299 -13 1997 131 7 0 chr11 107563034 107563379 -41220093 - AluSq SINE Alu 0 347 1 217 300 83 0 chr11 107564074 107564134 -41219338 + L2 LINE L2 3249 3313 0 1194 217 31 8 chr11 107564183 107564441 -41219031 - AluJo SINE Alu -20 292 29 21 36 0 0 chr11 107564972 107565000 -41218472 + AT_rich Low_complexity Low_complexity 1 28 0 247 0 0 73 chr11 107566251 107566292 -41217180 + (TAAAAA)n Simple_repeat Simple_repeat 5 42 0 591 291 66 0 chr11 107567442 107567624 -41215848 - MIR SINE MIR -28 234 41 24 53 0 0 chr11 107568551 107568589 -41214883 + AT_rich Low_complexity Low_complexity 1 38 0 5893 112 9 9 chr11 107568593 107570255 -41213217 - L1PA13 LINE L1 -6 6157 4492 374 346 55 14 chr11 107570913 107571130 -41212342 - MIR SINE MIR -3 259 34 6021 205 77 17 chr11 107571138 107571560 -41211912 - L1MC3 LINE L1 -286 7499 7104 213 39 0 0 chr11 107571560 107571586 -41211886 + (TCTA)n Simple_repeat Simple_repeat 1 26 0 6021 205 77 17 chr11 107571586 107571727 -41211745 - L1MC3 LINE L1 -681 7104 6973 182 36 0 36 chr11 107571727 107571755 -41211717 + (TTTG)n Simple_repeat Simple_repeat 4 30 0 6021 205 77 17 chr11 107571755 107572888 -41210584 - L1MC3 LINE L1 -812 6973 5670 30 27 0 0 chr11 107573492 107573529 -41209943 + AT_rich Low_complexity Low_complexity 1 37 0 2543 120 11 41 chr11 107573909 107574374 -41209098 - L1MA2 LINE L1 0 7723 7273 19256 194 37 15 chr11 107574413 107576975 -41206497 - L1MA2 LINE L1 -446 7277 4772 2235 99 20 0 chr11 107576975 107577269 -41206203 - AluY SINE Alu -11 300 1 19256 194 37 15 chr11 107577269 107579578 -41203894 - L1MA2 LINE L1 -2951 4772 2515 2880 9 0 0 chr11 107579578 107579896 -41203576 + AluYb8 SINE Alu 1 318 0 19256 194 37 15 chr11 107579896 107582143 -41201329 - L1MA2 LINE L1 -5208 2515 9 1051 185 99 21 chr11 107582206 107582338 -41201134 - AluJo SINE Alu -30 282 162 930 58 22 7 chr11 107582338 107582476 -41200996 + (GAAA)n Simple_repeat Simple_repeat 2 141 0 1051 185 99 21 chr11 107582476 107582586 -41200886 - AluJo SINE Alu -150 162 21 2025 118 0 22 chr11 107583152 107583465 -41200007 + AluY SINE Alu 1 306 -5 1614 190 30 3 chr11 107585216 107585516 -41197956 + AluJb SINE Alu 1 308 -4 195 42 0 0 chr11 107586475 107586499 -41196973 + (CAT)n Simple_repeat Simple_repeat 1 24 0 360 306 48 20 chr11 107586517 107586664 -41196808 - MIR SINE MIR -27 235 85 1976 134 3 0 chr11 107587307 107587635 -41195837 + AluSq SINE Alu 1 329 0 253 212 0 106 chr11 107588339 107588405 -41195067 - L2 LINE L2 -17 3296 3238 199 203 29 0 chr11 107588410 107588479 -41194993 + (TA)n Simple_repeat Simple_repeat 2 72 0 649 314 77 21 chr11 107588504 107588829 -41194643 - L2 LINE L2 -141 3172 2830 2683 191 40 46 chr11 107589046 107589673 -41193799 - MER39 LTR ERV1 0 707 85 599 241 8 17 chr11 107589972 107590148 -41193324 - MER63 DNA MER1_type -1 1687 658 1469 202 3 30 chr11 107590257 107590554 -41192918 - AluJo SINE Alu -21 291 3 1685 170 134 0 chr11 107590567 107590896 -41192576 - MER83C LTR ERV1 0 373 1 30 0 0 0 chr11 107591063 107591093 -41192379 + AT_rich Low_complexity Low_complexity 1 30 0 276 264 112 40 chr11 107592863 107592988 -41190484 + MIR SINE MIR 11 144 -118 210 273 76 0 chr11 107593172 107593238 -41190234 - MER91C DNA MER1_type -31 109 39 21 82 0 0 chr11 107593356 107593405 -41190067 + AT_rich Low_complexity Low_complexity 1 49 0 308 114 0 0 chr11 107594306 107594350 -41189122 - MADE1 DNA Mariner 0 80 37 216 200 0 0 chr11 107594653 107594698 -41188774 + CT-rich Low_complexity Low_complexity 4 48 0 241 299 87 47 chr11 107594698 107595079 -41188393 - L1MC/D LINE L1 -1901 5907 5512 186 143 0 0 chr11 107595197 107595232 -41188240 + (TG)n Simple_repeat Simple_repeat 2 36 0 223 382 81 7 chr11 107595843 107595979 -41187493 - L2 LINE L2 -1 3312 3167 259 335 38 13 chr11 107596516 107596674 -41186798 + MIR SINE MIR 87 248 -14 454 316 29 0 chr11 107597123 107597262 -41186210 - L2 LINE L2 -12 3301 3159 25 51 0 0 chr11 107598511 107598550 -41184922 + AT_rich Low_complexity Low_complexity 1 39 0 295 365 2 8 chr11 107598771 107598912 -41184560 - MIR SINE MIR -58 150 13 21 36 0 0 chr11 107599563 107599591 -41183881 + AT_rich Low_complexity Low_complexity 1 28 0 656 257 106 26 chr11 107600287 107600513 -41182959 + MIR SINE MIR 1 244 -18 295 399 57 6 chr11 107600585 107600743 -41182729 + L2 LINE L2 3106 3271 -1 777 181 0 0 chr11 107601455 107601593 -41181879 - AluSg/x SINE Alu -2 310 173 24 0 0 0 chr11 107602422 107602446 -41181026 + AT_rich Low_complexity Low_complexity 1 24 0 28 29 0 0 chr11 107602583 107602618 -41180854 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr11 107603325 107603360 -41180112 + AT_rich Low_complexity Low_complexity 1 35 0 560 233 38 23 chr11 107603711 107603844 -41179628 + MSTD LTR MaLR 1 135 -293 991 231 25 81 chr11 107603905 107604226 -41179246 + MSTD LTR MaLR 92 394 -2 447 298 118 29 chr11 107604354 107604700 -41178772 - L1M4 LINE L1 -1981 4165 3789 31 44 0 0 chr11 107604940 107604985 -41178487 + AT_rich Low_complexity Low_complexity 1 45 0 27 92 0 0 chr11 107605886 107605962 -41177510 + AT_rich Low_complexity Low_complexity 1 76 0 863 146 0 0 chr11 107606464 107606594 -41176878 + FLAM_C SINE Alu 1 130 -3 1718 236 147 21 chr11 107606861 107607386 -41176086 - MLT1E LTR MaLR -2 591 1 30 77 0 0 chr11 107608063 107608128 -41175344 + AT_rich Low_complexity Low_complexity 1 65 0 29 28 0 0 chr11 107608529 107608565 -41174907 + AT_rich Low_complexity Low_complexity 1 36 0 579 305 93 9 chr11 107609126 107609352 -41174120 + MIR SINE MIR 16 260 -2 198 295 0 64 chr11 107610237 107610315 -41173157 + L2 LINE L2 3231 3303 -10 193 397 41 0 chr11 107610321 107610467 -41173005 + L2 LINE L2 2689 2840 -474 22 0 0 0 chr11 107611053 107611075 -41172397 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 107611379 107611400 -41172072 + AT_rich Low_complexity Low_complexity 1 21 0 957 249 24 7 chr11 107611436 107611733 -41171739 + L1M4 LINE L1 4990 5291 -855 1921 91 0 8 chr11 107611736 107611999 -41171473 + AluSc SINE Alu 47 307 -2 2147 127 15 22 chr11 107611999 107612465 -41171007 - MER50 LTR ERV1 -161 573 60 5348 144 45 50 chr11 107612497 107613998 -41169474 + L1MA5A LINE L1 4606 6290 -7 1653 236 6 0 chr11 107614046 107614397 -41169075 + L1MC1 LINE L1 5961 6313 -20 192 303 117 48 chr11 107615091 107615236 -41168236 + L2 LINE L2 3106 3260 -12 230 279 0 15 chr11 107616812 107616880 -41166592 - MLT1J2 LTR MaLR -21 429 363 2235 103 0 0 chr11 107616944 107617244 -41166228 - AluSg SINE Alu 0 310 11 256 289 52 58 chr11 107617362 107617535 -41165937 - MLT1J1 LTR MaLR -272 174 3 24 53 0 0 chr11 107617824 107617862 -41165610 + AT_rich Low_complexity Low_complexity 1 38 0 201 180 0 0 chr11 107618611 107618661 -41164811 + GA-rich Low_complexity Low_complexity 1 50 0 703 326 85 21 chr11 107620190 107621159 -41162313 - ERVL LTR ERVL -811 4953 3873 21 36 0 0 chr11 107621340 107621368 -41162104 + AT_rich Low_complexity Low_complexity 1 28 0 1437 231 27 51 chr11 107621380 107621830 -41161642 - MER39 LTR ERV1 0 707 269 339 256 256 10 chr11 107622438 107622633 -41160839 - L2 LINE L2 -55 3258 3016 23 33 0 0 chr11 107622806 107622836 -41160636 + AT_rich Low_complexity Low_complexity 1 30 0 2175 103 3 10 chr11 107623966 107624266 -41159206 + AluSg SINE Alu 2 299 -11 477 354 114 35 chr11 107624561 107625138 -41158334 - L2 LINE L2 -604 2710 2088 547 99 0 0 chr11 107625150 107625231 -41158241 - AluSc SINE Alu -10 299 219 355 364 92 13 chr11 107625785 107626013 -41157459 + MIR SINE MIR 3 248 -14 215 270 0 16 chr11 107627008 107627071 -41156401 - L3b LINE CR1 -405 1178 1117 329 289 101 40 chr11 107627524 107627951 -41155521 + MLT1L LTR MaLR 142 572 -16 1117 211 69 58 chr11 107628130 107628491 -41154981 + MLT1A1 LTR MaLR 1 365 0 2015 131 23 57 chr11 107629384 107629772 -41153700 + THE1C LTR MaLR 1 375 0 290 420 50 25 chr11 107630539 107630777 -41152695 + L2 LINE L2 2997 3240 -32 2002 107 40 0 chr11 107631337 107631636 -41151836 + AluY SINE Alu 1 311 0 315 290 165 16 chr11 107633834 107634082 -41149390 + L1ME4a LINE L1 5636 5920 -201 2231 87 0 3 chr11 107634187 107634476 -41148996 + AluSc SINE Alu 16 303 -6 270 229 135 21 chr11 107635279 107635375 -41148097 + MIR SINE MIR 134 240 -22 30 0 0 0 chr11 107635403 107635433 -41148039 + AT_rich Low_complexity Low_complexity 1 30 0 332 274 32 0 chr11 107635565 107635660 -41147812 - MER2 DNA MER2_type -247 98 1 2236 100 3 7 chr11 107635748 107636057 -41147415 - AluSq SINE Alu -5 308 1 1375 318 60 25 chr11 107636350 107636989 -41146483 - L2 LINE L2 -2396 918 258 393 39 0 0 chr11 107637036 107637087 -41146385 + (TG)n Simple_repeat Simple_repeat 2 52 0 380 283 35 92 chr11 107639861 107640034 -41143438 - MIR SINE MIR -16 246 84 615 336 106 16 chr11 107640441 107640762 -41142710 + L2 LINE L2 2029 2378 -936 23 33 0 0 chr11 107641033 107641063 -41142409 + AT_rich Low_complexity Low_complexity 1 30 0 2036 120 20 0 chr11 107641210 107641511 -41141961 + AluSq SINE Alu 1 307 -6 261 370 41 7 chr11 107641973 107642119 -41141353 - MIR SINE MIR -93 169 19 27 0 0 0 chr11 107642258 107642285 -41141187 + AT_rich Low_complexity Low_complexity 1 27 0 204 40 0 0 chr11 107642955 107642980 -41140492 + (TG)n Simple_repeat Simple_repeat 2 26 0 2472 78 0 0 chr11 107643093 107643402 -41140070 + AluSx SINE Alu 4 312 0 38 0 0 0 chr11 107644064 107644102 -41139370 + AT_rich Low_complexity Low_complexity 1 38 0 396 273 16 31 chr11 107644460 107644588 -41138884 - MLT1J1 LTR MaLR -313 133 8 22 0 0 0 chr11 107644636 107644658 -41138814 + AT_rich Low_complexity Low_complexity 1 22 0 568 227 0 8 chr11 107644663 107644782 -41138690 - FLAM_A SINE Alu -14 119 2 2078 114 10 0 chr11 107645845 107646134 -41137338 - AluSx SINE Alu -20 292 1 1935 145 0 3 chr11 107647584 107647888 -41135584 + AluSx SINE Alu 5 307 -5 248 214 90 34 chr11 107648351 107648440 -41135032 + L1MC4 LINE L1 6619 6712 -1330 390 211 0 0 chr11 107648679 107648793 -41134679 + (TA)n Simple_repeat Simple_repeat 1 114 0 233 261 0 43 chr11 107648810 107648902 -41134570 + (TATATG)n Simple_repeat Simple_repeat 2 89 0 2320 83 0 3 chr11 107649466 107649766 -41133706 + AluSq SINE Alu 1 299 -14 195 359 119 18 chr11 107649833 107650176 -41133296 + L2 LINE L2 2037 2414 -900 328 302 44 46 chr11 107650707 107650885 -41132587 + MIR SINE MIR 11 187 -67 424 371 45 0 chr11 107651122 107651300 -41132172 + MIR SINE MIR 35 220 -42 2178 120 0 0 chr11 107651309 107651610 -41131862 + AluSg SINE Alu 1 301 -9 21 57 0 0 chr11 107651693 107651728 -41131744 + AT_rich Low_complexity Low_complexity 1 35 0 244 286 18 0 chr11 107652334 107652390 -41131082 - MIR SINE MIR -69 139 83 1607 179 3 18 chr11 107652395 107652744 -41130728 - AluJb SINE Alu 0 347 3 231 284 68 0 chr11 107653184 107653272 -41130200 - MLT1H1 LTR MaLR -2 553 460 254 154 31 0 chr11 107653920 107653985 -41129487 + L1MC4 LINE L1 6638 6704 -1338 217 175 25 0 chr11 107653985 107654025 -41129447 + (TATATG)n Simple_repeat Simple_repeat 3 43 0 387 156 33 100 chr11 107654034 107654124 -41129348 + MER82 DNA MER2_type 8 91 -562 255 306 129 29 chr11 107654161 107654331 -41129141 - MIR SINE MIR -74 188 2 766 222 32 77 chr11 107654354 107654575 -41128897 + MER82 DNA MER2_type 442 652 -1 26 0 0 0 chr11 107655688 107655714 -41127758 + AT_rich Low_complexity Low_complexity 1 26 0 275 327 10 20 chr11 107655721 107655822 -41127650 - MIR3 SINE MIR -11 197 98 2312 87 0 3 chr11 107656037 107656337 -41127135 - AluY SINE Alu -12 299 1 335 340 63 16 chr11 107656498 107656689 -41126783 - MIR SINE MIR -15 247 48 1455 133 47 92 chr11 107657936 107658386 -41125086 + THE1C LTR MaLR 1 428 0 532 328 12 19 chr11 107658753 107659012 -41124460 + L1MEd LINE L1 566 822 -5297 24 0 0 0 chr11 107660540 107660564 -41122908 + AT_rich Low_complexity Low_complexity 1 24 0 338 367 25 0 chr11 107660584 107660704 -41122768 - L2 LINE L2 -1 3312 3190 2048 242 109 13 chr11 107661268 107662060 -41121412 - Charlie2 DNA MER1_type -38 2824 1957 501 279 18 109 chr11 107662079 107662362 -41121110 - Charlie2 DNA MER1_type -2602 260 4 316 402 48 15 chr11 107662555 107662888 -41120584 - L2 LINE L2 -411 2903 2560 237 297 152 14 chr11 107663314 107663459 -41120013 - L2 LINE L2 -34 3279 3115 56 83 0 0 chr11 107663860 107663993 -41119479 + AT_rich Low_complexity Low_complexity 1 133 0 377 236 68 56 chr11 107664267 107664428 -41119044 + L1MEc LINE L1 29 191 -6205 * 1314 254 67 32 chr11 107664414 107664907 -41118565 + L1ME1 LINE L1 5509 6018 -148 473 252 152 7 chr11 107665627 107665778 -41117694 + MER3 DNA MER1_type 37 209 0 227 175 0 0 chr11 107665745 107665785 -41117687 - MER3 DNA MER1_type -129 80 41 * 351 113 0 0 chr11 107665988 107666041 -41117431 + (T)n Simple_repeat Simple_repeat 1 53 0 1787 123 0 76 chr11 107666472 107666812 -41116660 + AluSx SINE Alu 6 322 0 2606 43 0 0 chr11 107666823 107667124 -41116348 + AluY SINE Alu 3 303 -8 347 244 11 22 chr11 107669204 107669294 -41114178 + L2 LINE L2 3225 3313 0 2000 130 115 43 chr11 107669317 107669539 -41113933 - MSTA LTR MaLR 0 428 224 2508 52 0 3 chr11 107669539 107669846 -41113626 - AluY SINE Alu -5 306 1 2000 130 115 43 chr11 107669846 107670022 -41113450 - MSTA LTR MaLR -204 224 1 473 250 45 39 chr11 107670527 107670683 -41112789 - MLT1J2 LTR MaLR -293 157 1 478 189 72 0 chr11 107670686 107670797 -41112675 - HAL1 LINE L1 -857 1650 1532 333 331 15 7 chr11 107670884 107671077 -41112395 - L1M4 LINE L1 -1022 5124 4934 5122 85 39 19 chr11 107721531 107722250 -41061222 + THE1A-int LTR MaLR 848 1580 0 2373 132 3 3 chr11 107722250 107722605 -41060867 + THE1A LTR MaLR 1 355 0 2015 141 0 14 chr11 107722679 107722969 -41060503 + AluSx SINE Alu 1 286 -26 24 32 0 0 chr11 107724378 107724409 -41059063 + AT_rich Low_complexity Low_complexity 1 31 0 514 346 88 26 chr11 107724638 107725085 -41058387 - L2 LINE L2 -325 2947 2475 590 204 186 12 chr11 107725229 107725384 -41058088 - MER5B DNA MER1_type -14 164 1 314 351 9 0 chr11 107726393 107726507 -41056965 - MIR SINE MIR -27 235 121 971 149 111 89 chr11 107726514 107726830 -41056642 - MER33 DNA MER1_type -1 323 1 329 330 46 0 chr11 107726834 107726943 -41056529 - MIR SINE MIR -148 114 1 289 391 23 8 chr11 107727031 107727164 -41056308 - MIR SINE MIR -114 148 14 319 321 46 41 chr11 107729265 107729461 -41054011 - MIR SINE MIR -46 216 20 185 307 80 80 chr11 107730102 107730252 -41053220 - L2 LINE L2 -18 3254 3105 265 290 86 43 chr11 107730473 107730566 -41052906 + L2 LINE L2 3175 3271 -1 271 245 75 19 chr11 107731232 107731338 -41052134 - LTR16B LTR ERVL -86 378 267 635 155 71 184 chr11 107731366 107731406 -41052066 - MER20 DNA MER1_type 0 219 176 1444 215 0 40 chr11 107731406 107731731 -41051741 + AluJo SINE Alu 1 312 0 635 155 71 184 chr11 107731731 107731781 -41051691 - MER20 DNA MER1_type -43 176 122 2280 156 47 5 chr11 107731781 107732203 -41051269 - L1MA6 LINE L1 -1 6299 5860 635 155 71 184 chr11 107732203 107732224 -41051248 - MER20 DNA MER1_type -97 122 100 459 103 26 0 chr11 107732224 107732302 -41051170 + MADE1 DNA Mariner 1 80 0 635 155 71 184 chr11 107732302 107732427 -41051045 - MER20 DNA MER1_type -119 100 8 339 314 41 36 chr11 107732461 107732655 -41050817 - LTR16B LTR ERVL -247 217 23 2265 105 6 10 chr11 107733374 107733687 -41049785 + AluSx SINE Alu 1 312 0 922 214 26 2 chr11 107733736 107734088 -41049384 - MSTB LTR MaLR 0 426 1 1000 217 22 18 chr11 107735916 107736142 -41047330 - MER49 LTR ERV1 0 923 697 581 147 0 11 chr11 107736167 107736262 -41047210 - MER49 LTR ERV1 0 923 830 560 156 0 10 chr11 107736232 107736328 -41047144 + MER49 LTR ERV1 829 923 0 * 393 372 28 6 chr11 107736425 107736605 -41046867 + L2 LINE L2 2768 2951 -363 2307 89 3 3 chr11 107736734 107737037 -41046435 - AluSp SINE Alu -8 305 3 813 277 58 5 chr11 107737562 107737786 -41045686 + MIR SINE MIR 1 236 -26 850 309 58 24 chr11 107738000 107738378 -41045094 - MER93a LTR ERV1 -11 391 1 309 313 122 14 chr11 107738417 107738564 -41044908 - HAL1 LINE L1 -960 1547 1385 367 280 67 34 chr11 107738567 107738806 -41044666 - L1MEd LINE L1 -4864 1255 1009 24 0 0 0 chr11 107739661 107739685 -41043787 + AT_rich Low_complexity Low_complexity 1 24 0 1637 179 68 0 chr11 107741134 107741459 -41042013 - MER7A DNA MER2_type -1 345 1 2111 133 7 0 chr11 107741486 107741786 -41041686 - AluSx SINE Alu -8 304 3 815 290 107 54 chr11 107741866 107742358 -41041114 - L2 LINE L2 -6 3307 2779 218 179 0 0 chr11 107742385 107742424 -41041048 + CT-rich Low_complexity Low_complexity 2 40 0 842 201 5 0 chr11 107743159 107743343 -41040129 + L1MA7 LINE L1 6102 6286 -5 240 204 20 0 chr11 107743368 107743417 -41040055 + GA-rich Low_complexity Low_complexity 2 51 0 429 20 0 0 chr11 107743548 107743598 -41039874 + (CA)n Simple_repeat Simple_repeat 2 51 0 26 0 0 0 chr11 107744631 107744657 -41038815 + AT_rich Low_complexity Low_complexity 1 26 0 265 235 70 43 chr11 107746118 107746233 -41037239 - L1MC4 LINE L1 -1308 6734 6617 24 0 0 0 chr11 107747196 107747220 -41036252 + AT_rich Low_complexity Low_complexity 1 24 0 285 167 0 0 chr11 107747904 107747952 -41035520 - MER53 DNA DNA 0 189 142 22 35 0 0 chr11 107748688 107748717 -41034755 + AT_rich Low_complexity Low_complexity 1 29 0 6195 194 102 99 chr11 107749071 107749862 -41033610 + L1MC3 LINE L1 5424 6211 -1574 1951 121 7 0 chr11 107749862 107750181 -41033291 - AluSx SINE Alu 0 321 1 6195 194 102 99 chr11 107750181 107751045 -41032427 + L1MC3 LINE L1 6211 7188 -597 243 326 20 10 chr11 107751045 107751143 -41032329 + MLT1F1 LTR MaLR 35 133 -434 6195 194 102 99 chr11 107751143 107751561 -41031911 + L1MC3 LINE L1 7188 7603 -182 2062 218 53 50 chr11 107751569 107752152 -41031320 + MER34C LTR ERV1 1 585 0 358 250 39 0 chr11 107752152 107752256 -41031216 + L1MC3 LINE L1 7608 7715 -70 265 336 159 27 chr11 107752443 107752851 -41030621 - L2 LINE L2 -888 2426 1965 791 259 126 74 chr11 107753183 107753658 -41029814 - MLT1H LTR MaLR -4 545 46 1561 184 17 37 chr11 107753766 107754060 -41029412 - AluJo SINE Alu -24 288 1 207 0 0 0 chr11 107754172 107754195 -41029277 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2718 149 93 93 chr11 107754768 107755555 -41027917 + LTR48 LTR ERV1 1 787 0 2250 166 60 8 chr11 107755710 107756108 -41027364 + MSTB LTR MaLR 8 426 0 2051 88 0 0 chr11 107758964 107759277 -41024195 - AluSg SINE Alu 0 323 11 185 105 0 26 chr11 107759661 107759699 -41023773 + (GAAA)n Simple_repeat Simple_repeat 2 38 0 207 100 0 0 chr11 107759808 107759838 -41023634 + (A)n Simple_repeat Simple_repeat 1 30 0 941 332 57 51 chr11 107760259 107760901 -41022571 - L2 LINE L2 -5 3308 2584 341 350 73 39 chr11 107760907 107761141 -41022331 + L3 LINE CR1 905 1146 -431 1285 144 0 58 chr11 107761840 107762083 -41021389 + MER30 DNA MER1_type 2 230 0 24 32 0 0 chr11 107762400 107762431 -41021041 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr11 107762848 107762871 -41020601 + AT_rich Low_complexity Low_complexity 1 23 0 2495 54 0 13 chr11 107762965 107763279 -41020193 + AluY SINE Alu 1 310 -1 733 118 0 0 chr11 107763313 107763423 -41020049 - AluSc SINE Alu -18 291 182 6388 85 0 16 chr11 107763593 107764590 -41018882 - L1PA7 LINE L1 -11 6143 5154 295 298 211 0 chr11 107764635 107764749 -41018723 + MIR3 SINE MIR 28 165 -43 1986 166 11 22 chr11 107766243 107766610 -41016862 - MLT1A1 LTR MaLR -2 363 1 198 0 0 0 chr11 107767471 107767493 -41015979 + (TTA)n Simple_repeat Simple_repeat 3 24 0 43761 40 2 1 chr11 107767493 107773620 -41009852 - L1PA4 LINE L1 -18 6137 1 4382 220 112 33 chr11 107774003 107775350 -41008122 + Charlie1a DNA MER1_type 1 1454 -1 202 182 0 0 chr11 107775590 107775623 -41007849 + polypyrimidine Low_complexity Low_complexity 4 36 0 248 349 75 7 chr11 107776120 107776266 -41007206 + MIR SINE MIR 107 262 0 2414 65 0 3 chr11 107777709 107778016 -41005456 + AluY SINE Alu 1 306 -5 343 336 50 0 chr11 107780106 107780225 -41003247 + MIR SINE MIR 32 156 -106 337 331 58 0 chr11 107780406 107780545 -41002927 - L2 LINE L2 -340 2973 2827 2300 87 0 10 chr11 107781108 107781408 -41002064 - AluSc SINE Alu -12 297 1 916 312 72 45 chr11 107781739 107782293 -41001179 - L2 LINE L2 -839 2475 1907 504 301 109 0 chr11 107782525 107782764 -41000708 - L2 LINE L2 -592 2722 2458 2324 154 29 5 chr11 107784700 107785121 -40998351 + L1MA6 LINE L1 5861 6291 -9 409 244 218 19 chr11 107785666 107785822 -40997650 + MER5A DNA MER1_type 3 189 0 504 179 0 0 chr11 107787986 107788098 -40995374 + T-rich Low_complexity Low_complexity 5 116 0 695 214 0 6 chr11 107788099 107788267 -40995205 + CT-rich Low_complexity Low_complexity 2 168 0 21 0 0 0 chr11 107789650 107789671 -40993801 + AT_rich Low_complexity Low_complexity 1 21 0 370 233 69 17 chr11 107789791 107789907 -40993565 + L1MA4A LINE L1 6011 6132 -171 463 183 0 32 chr11 107789914 107790007 -40993465 + L1MA4A LINE L1 6190 6279 -24 200 307 213 16 chr11 107790782 107790909 -40992563 + L2 LINE L2 3158 3309 -4 263 242 22 11 chr11 107791736 107791827 -40991645 + (TA)n Simple_repeat Simple_repeat 1 92 0 37794 28 23 1 chr11 107792459 107797889 -40985583 + L1HS LINE L1 606 6155 0 1285 203 75 43 chr11 107798156 107798530 -40984942 + MLT1B LTR MaLR 5 390 0 543 294 122 15 chr11 107799709 107799906 -40983566 - MIR SINE MIR -29 233 16 262 342 147 15 chr11 107801881 107802042 -40981430 - MIR SINE MIR -45 163 16 1917 154 11 29 chr11 107802909 107803291 -40980181 + THE1C LTR MaLR 1 375 0 286 182 50 16 chr11 107804766 107804887 -40978585 + (TA)n Simple_repeat Simple_repeat 1 125 0 1118 229 34 111 chr11 107805344 107805533 -40977939 - L1MD2 LINE L1 -15 6344 6201 1338 198 93 7 chr11 107805533 107805811 -40977661 - AluJb SINE Alu -10 302 1 1118 229 34 111 chr11 107805811 107806028 -40977444 - L1MD2 LINE L1 -158 6201 5969 398 336 87 0 chr11 107806067 107806216 -40977256 + MIR SINE MIR 19 180 -82 2331 93 0 10 chr11 107806604 107806917 -40976555 + AluSx SINE Alu 1 310 -2 316 205 260 0 chr11 107807902 107808029 -40975443 - Charlie1 DNA MER1_type -1 2760 2601 578 90 40 40 chr11 107808549 107808649 -40974823 + L1MA2 LINE L1 6205 6304 0 426 224 119 8 chr11 107809179 107809313 -40974159 - L1MB3 LINE L1 -8 6175 6027 2597 39 0 7 chr11 107809527 107809837 -40973635 + AluY SINE Alu 4 311 0 22 0 0 0 chr11 107809909 107809931 -40973541 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr11 107810186 107810210 -40973262 + AT_rich Low_complexity Low_complexity 1 24 0 219 69 0 0 chr11 107810297 107810326 -40973146 + (T)n Simple_repeat Simple_repeat 1 29 0 277 328 87 81 chr11 107810801 107811158 -40972314 - L2 LINE L2 -40 3232 2874 484 330 37 48 chr11 107813001 107813274 -40970198 - MLT1K LTR MaLR 0 588 319 180 77 0 0 chr11 107813556 107813582 -40969890 + (A)n Simple_repeat Simple_repeat 1 26 0 189 277 46 46 chr11 107814846 107814911 -40968561 + L2 LINE L2 3207 3271 -1 205 182 0 0 chr11 107815712 107815745 -40967727 + (CATATA)n Simple_repeat Simple_repeat 2 34 0 746 125 70 0 chr11 107816527 107816655 -40966817 + L1MA4A LINE L1 6103 6239 -64 312 27 0 0 chr11 107818411 107818448 -40965024 + (CA)n Simple_repeat Simple_repeat 2 38 0 38 85 0 0 chr11 107819630 107819724 -40963748 + AT_rich Low_complexity Low_complexity 1 94 0 195 184 0 0 chr11 107820028 107820066 -40963406 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 38 39 0 0 chr11 107821221 107821273 -40962199 + AT_rich Low_complexity Low_complexity 1 52 0 220 241 37 0 chr11 107821524 107821578 -40961894 - MIR SINE MIR -137 125 70 1814 155 21 15 chr11 107821583 107821919 -40961553 + MER44D DNA MER2_type 2 609 0 337 296 66 31 chr11 107824068 107824264 -40959208 - L2 LINE L2 -1274 2040 1838 192 322 151 40 chr11 107825058 107825210 -40958262 + MIR3 SINE MIR 34 202 -6 27 0 0 0 chr11 107825790 107825817 -40957655 + AT_rich Low_complexity Low_complexity 1 27 0 591 319 40 43 chr11 107826203 107826479 -40956993 + LTR33 LTR ERVL 19 293 -228 2368 66 7 0 chr11 107826525 107826827 -40956645 + AluY SINE Alu 1 304 -7 362 291 64 64 chr11 107826973 107827209 -40956263 + L1ME3A LINE L1 5709 5952 -232 25 51 0 0 chr11 107827565 107827604 -40955868 + AT_rich Low_complexity Low_complexity 1 39 0 1668 153 79 59 chr11 107827748 107827819 -40955653 + MER7A DNA MER2_type 2 70 -2968 2238 108 44 3 chr11 107827819 107828160 -40955312 - THE1A LTR MaLR 0 355 1 10411 109 14 21 chr11 107828160 107829341 -40954131 - THE1A-int LTR MaLR 0 1580 393 2005 133 10 3 chr11 107829341 107829642 -40953830 - AluSp SINE Alu -4 309 7 1638 142 8 4 chr11 107829642 107829889 -40953583 - AluSx SINE Alu -59 253 6 10411 109 14 21 chr11 107829889 107830292 -40953180 - THE1A-int LTR MaLR -1185 395 5 2094 120 89 0 chr11 107830296 107830622 -40952850 - THE1A LTR MaLR 0 355 1 1668 153 79 59 chr11 107830622 107830884 -40952588 + MER7A DNA MER2_type 72 346 0 3441 142 39 12 chr11 107832498 107833139 -40950333 - L1MA6 LINE L1 0 6300 5643 354 340 28 52 chr11 107833384 107833596 -40949876 + MIR SINE MIR 14 220 -42 30 45 0 0 chr11 107833857 107833901 -40949571 + AT_rich Low_complexity Low_complexity 1 44 0 2053 125 3 7 chr11 107835027 107835332 -40948140 + AluSg SINE Alu 1 304 -6 775 43 0 0 chr11 107835425 107835517 -40947955 - L1PA7 LINE L1 -528 5644 5553 3631 57 8 4 chr11 107835517 107835990 -40947482 + L1PA7 LINE L1 5663 6140 -14 192 77 0 0 chr11 107836855 107836881 -40946591 + (A)n Simple_repeat Simple_repeat 1 26 0 5781 191 98 21 chr11 107836892 107838337 -40945135 - L1MA5A LINE L1 -804 5342 3788 4658 165 42 7 chr11 107838339 107839236 -40944236 + L1MA5A LINE L1 5369 6297 0 320 175 16 0 chr11 107840813 107840876 -40942596 - L1MA5A LINE L1 -4 6293 6230 1341 277 54 62 chr11 107841983 107842576 -40940896 - MLT1E LTR MaLR -3 590 3 519 224 0 40 chr11 107842825 107842950 -40940522 + MER46C DNA MER2_type 217 336 -2 2536 212 59 12 chr11 107844864 107845458 -40938014 - LTR26E LTR ERV1 0 622 1 215 247 14 0 chr11 107845754 107845827 -40937645 + (CATA)n Simple_repeat Simple_repeat 3 76 0 230 293 0 0 chr11 107845961 107846036 -40937436 + L1MC4 LINE L1 6613 6687 -1355 198 208 0 0 chr11 107846062 107846110 -40937362 + (TATG)n Simple_repeat Simple_repeat 4 51 0 195 139 0 0 chr11 107847097 107847133 -40936339 + (A)n Simple_repeat Simple_repeat 1 36 0 25 0 0 0 chr11 107847586 107847611 -40935861 + AT_rich Low_complexity Low_complexity 1 25 0 420 320 143 0 chr11 107848058 107848289 -40935183 - L2 LINE L2 -1 3312 3049 1988 129 0 43 chr11 107848628 107848954 -40934518 + AluSq SINE Alu 1 312 -1 268 250 90 10 chr11 107849057 107849157 -40934315 + MLT1K LTR MaLR 182 289 -299 2179 183 7 22 chr11 107849500 107849911 -40933561 - MLT2D LTR ERVL 0 414 10 896 256 11 14 chr11 107849955 107850236 -40933236 + L1ME1 LINE L1 4818 5097 -1049 245 294 59 47 chr11 107850231 107850401 -40933071 + L1ME1 LINE L1 5849 6020 -146 * 710 188 0 13 chr11 107850401 107850555 -40932917 + L1MA10 LINE L1 6180 6331 -3 817 199 51 0 chr11 107850772 107850948 -40932524 - Tigger1 DNA MER2_type -1 2417 2233 210 71 0 0 chr11 107850948 107850976 -40932496 + (CA)n Simple_repeat Simple_repeat 1 28 0 187 286 0 48 chr11 107852704 107852767 -40930705 - L2 LINE L2 -832 2482 2423 29 28 0 0 chr11 107853668 107853704 -40929768 + AT_rich Low_complexity Low_complexity 1 36 0 25 51 0 0 chr11 107855470 107855509 -40927963 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr11 107857140 107857168 -40926304 + AT_rich Low_complexity Low_complexity 1 28 0 242 149 0 0 chr11 107857428 107857475 -40925997 - L1MC4 LINE L1 -1344 6698 6652 464 367 71 9 chr11 107857845 107858055 -40925417 + MIR SINE MIR 28 250 -12 463 282 24 47 chr11 107858675 107858845 -40924627 - MIR SINE MIR 0 262 97 12447 27 0 0 chr11 107860874 107863124 -40920348 + L1PA2 LINE L1 3898 6152 -3 5100 155 4 45 chr11 107863299 107865019 -40918453 - L1PA6 LINE L1 -11 6143 4399 4170 210 19 7 chr11 107865020 107865964 -40917508 - L1PA6 LINE L1 -2467 3679 2725 1767 166 59 3 chr11 107866065 107866421 -40917051 - L1MA4 LINE L1 -13 6287 5912 2015 44 4 20 chr11 107866490 107866742 -40916730 - AluY SINE Alu -9 302 55 492 229 68 0 chr11 107867183 107867301 -40916171 - MLT1H LTR MaLR -344 205 80 532 299 218 13 chr11 107867362 107867747 -40915725 - L2 LINE L2 -2063 1251 788 2141 102 3 0 chr11 107868427 107868721 -40914751 + AluSg1 SINE Alu 1 295 -14 1682 124 25 7 chr11 107869485 107869760 -40913712 - L1MA3 LINE L1 -8 6297 6018 1481 69 35 0 chr11 107870208 107870411 -40913061 + AluYb8 SINE Alu 100 309 -9 186 204 0 45 chr11 107870484 107870528 -40912944 - MIR SINE MIR -11 251 210 * 204 216 0 0 chr11 107870525 107870562 -40912910 - L2 LINE L2 -91 3222 3186 1520 175 98 0 chr11 107871037 107871363 -40912109 - L1MA9 LINE L1 -6 6306 5949 269 219 14 0 chr11 107871384 107871457 -40912015 + CT-rich Low_complexity Low_complexity 1 74 0 1971 192 87 2 chr11 107871487 107871899 -40911573 - MER74C LTR ERVL -9 451 5 378 91 0 0 chr11 107872505 107872560 -40910912 + (CA)n Simple_repeat Simple_repeat 2 56 0 1854 175 96 14 chr11 107873478 107873833 -40909639 + MLT1B LTR MaLR 3 386 -4 303 28 0 0 chr11 107873996 107874032 -40909440 + (TG)n Simple_repeat Simple_repeat 2 37 0 24 32 0 0 chr11 107874571 107874602 -40908870 + AT_rich Low_complexity Low_complexity 1 31 0 350 344 115 0 chr11 107875912 107876069 -40907403 - MER91A DNA MER1_type -1 195 21 283 308 90 15 chr11 107878795 107878928 -40904544 + MIR SINE MIR 34 176 -86 207 0 0 0 chr11 107879695 107879718 -40903754 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 1548 166 6 66 chr11 107879797 107880116 -40903356 + AluJb SINE Alu 3 302 -10 7354 189 31 20 chr11 107881490 107881808 -40901664 - L1 LINE L1 -1031 5115 4802 1780 136 29 58 chr11 107881808 107882154 -40901318 + MER1B DNA MER1_type 2 337 0 7354 189 31 20 chr11 107882154 107882837 -40900635 - L1 LINE L1 -1344 4802 4128 2260 71 3 26 chr11 107882837 107883147 -40900325 - AluY SINE Alu -8 303 1 7354 189 31 20 chr11 107883147 107883758 -40899714 - L1 LINE L1 -2018 4128 3481 2230 241 10 57 chr11 107883758 107884339 -40899133 - MLT2B3 LTR ERVL 0 554 1 7354 189 31 20 chr11 107884339 107884396 -40899076 - L1 LINE L1 -2665 3481 3426 842 132 17 80 chr11 107884415 107884627 -40898845 + Tigger4(Zombi) DNA MER2_type 2389 2730 -1 551 239 70 7 chr11 107884701 107884843 -40898629 + MIR SINE MIR 102 252 -10 26 74 0 0 chr11 107884854 107884908 -40898564 + AT_rich Low_complexity Low_complexity 1 54 0 1942 159 0 0 chr11 107886434 107886723 -40896749 + AluSq SINE Alu 5 293 -20 27 62 0 0 chr11 107886845 107886893 -40896579 + AT_rich Low_complexity Low_complexity 1 48 0 1010 192 43 118 chr11 107887116 107887507 -40895965 + MLT1A1 LTR MaLR 2 363 -2 2510 60 0 0 chr11 107888495 107888797 -40894675 - AluY SINE Alu -9 302 1 260 183 0 73 chr11 107889027 107889067 -40894405 + A-rich Low_complexity Low_complexity 1 34 -42 1934 152 3 0 chr11 107889067 107889363 -40894109 - AluSx SINE Alu -15 297 1 260 183 0 73 chr11 107889363 107889404 -40894068 + A-rich Low_complexity Low_complexity 34 76 0 5011 186 60 6 chr11 107889968 107891069 -40892403 - L1MC1 LINE L1 -2 6331 5176 232 240 0 0 chr11 107892399 107892449 -40891023 - MLT1C LTR MaLR -5 385 336 * 973 268 39 7 chr11 107892447 107892727 -40890745 - MLT1C LTR MaLR -90 377 89 421 212 102 15 chr11 107892724 107892861 -40890611 - MLT1C LTR MaLR -230 237 89 * 704 203 123 28 chr11 107892858 107893070 -40890402 - MLT1C LTR MaLR -230 237 6 516 285 91 36 chr11 107893090 107893311 -40890161 + MIR SINE MIR 30 262 0 189 319 19 88 chr11 107894039 107894199 -40889273 - L2 LINE L2 -225 3047 2899 473 299 56 0 chr11 107894436 107894580 -40888892 - MIR SINE MIR -56 206 55 318 233 0 0 chr11 107895065 107895151 -40888321 + GA-rich Low_complexity Low_complexity 2 87 0 436 204 97 0 chr11 107895791 107895904 -40887568 + L1MB7 LINE L1 6052 6175 -9 7607 21 0 0 chr11 107896643 107898066 -40885406 - L1PA3 LINE L1 0 6155 4731 309 275 50 8 chr11 107898153 107898273 -40885199 + Charlie2 DNA MER1_type 4 128 -2734 1126 239 150 12 chr11 107898834 107899547 -40883925 + Charlie2 DNA MER1_type 1966 2862 0 614 198 138 67 chr11 107899677 107899788 -40883684 - MER33 DNA MER1_type -2265 320 218 1929 122 4 4 chr11 107899788 107900066 -40883406 - AluSp SINE Alu -8 305 28 614 198 138 67 chr11 107900066 107900252 -40883220 - MER33 DNA MER1_type -2367 218 2 210 231 19 0 chr11 107901649 107901701 -40881771 + L2 LINE L2 3219 3271 -1 222 191 16 32 chr11 107902488 107902551 -40880921 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 983 221 37 5 chr11 107903316 107903533 -40879939 + MER58A DNA MER1_type 1 224 0 2148 288 97 24 chr11 107903644 107904956 -40878516 - L1MC4 LINE L1 -95 7713 6414 1261 169 95 8 chr11 107904965 107905208 -40878264 + AluSx SINE Alu 35 298 -14 311 290 196 35 chr11 107905486 107905965 -40877507 - L1MC4a LINE L1 -1500 6308 5753 594 152 30 8 chr11 107905975 107906107 -40877365 - L1 LINE L1 -1643 4503 4369 * 1563 220 48 8 chr11 107906106 107906478 -40876994 + L1MA9 LINE L1 4559 4945 -1201 1926 205 32 46 chr11 107906557 107907230 -40876242 + L1MA9 LINE L1 5596 6203 -109 503 263 45 34 chr11 107908354 107908533 -40874939 - L1ME3A LINE L1 -16 6154 5974 22 35 0 0 chr11 107910226 107910255 -40873217 + AT_rich Low_complexity Low_complexity 1 29 0 236 267 200 0 chr11 107911470 107911575 -40871897 - L2 LINE L2 -2 3311 3186 448 288 24 47 chr11 107914913 107915083 -40868389 - MIR SINE MIR 0 262 97 12400 26 5 0 chr11 107917112 107919358 -40864114 + L1PA2 LINE L1 3898 6152 -3 5305 84 17 0 chr11 107919533 107920173 -40863299 - L1PA6 LINE L1 -11 6143 5428 2156 96 0 62 chr11 107920173 107920496 -40862976 - AluY SINE Alu -8 303 1 5305 84 17 0 chr11 107920496 107920891 -40862581 - L1PA6 LINE L1 -726 5428 5041 9289 102 6 9 chr11 107920891 107922263 -40861209 + L1PA6 LINE L1 3655 5022 -1124 313 74 56 0 chr11 107922494 107922548 -40860924 - L1PA4 LINE L1 -1 6154 6098 31 82 0 0 chr11 107922754 107922827 -40860645 + AT_rich Low_complexity Low_complexity 1 73 0 473 305 124 6 chr11 107924585 107924762 -40858710 - MIR SINE MIR -13 249 52 2300 129 5 39 chr11 107925146 107925556 -40857916 - L1PA16 LINE L1 -2 6867 6472 13314 225 55 21 chr11 107925561 107927915 -40855557 - L1PA15 LINE L1 -13 6803 4530 357 86 0 0 chr11 107927915 107927973 -40855499 + (TG)n Simple_repeat Simple_repeat 2 59 0 13314 225 55 21 chr11 107927973 107928442 -40855030 - L1PA15 LINE L1 -2286 4530 4078 2333 65 7 0 chr11 107928442 107928735 -40854737 - AluY SINE Alu -16 295 1 13314 225 55 21 chr11 107928735 107932495 -40850977 - L1PA15 LINE L1 -2738 4078 1 13352 201 68 75 chr11 107932499 107933339 -40850133 - L1PA16 LINE L1 -381 6488 5644 2040 132 9 23 chr11 107933339 107933687 -40849785 - L1PA13 LINE L1 -11 6152 5810 13352 201 68 75 chr11 107933687 107939342 -40844130 - L1PA16 LINE L1 -1225 5644 9 31 26 0 0 chr11 107939532 107939570 -40843902 + AT_rich Low_complexity Low_complexity 1 38 0 24 32 0 0 chr11 107939942 107939973 -40843499 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr11 107940074 107940103 -40843369 + AT_rich Low_complexity Low_complexity 1 29 0 241 118 39 0 chr11 107940203 107940254 -40843218 + (TA)n Simple_repeat Simple_repeat 1 53 0 280 293 41 49 chr11 107940637 107940760 -40842712 - L2 LINE L2 -943 2371 2250 2025 118 0 33 chr11 107941903 107942208 -40841264 + AluSg SINE Alu 1 295 -15 234 260 55 0 chr11 107942677 107942750 -40840722 + L1ME LINE L1 5624 5700 -421 897 188 7 0 chr11 107942905 107943054 -40840418 - AluSg/x SINE Alu -26 286 137 24 32 0 0 chr11 107943057 107943088 -40840384 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr11 107946377 107946398 -40837074 + AT_rich Low_complexity Low_complexity 1 21 0 247 151 66 28 chr11 107946800 107946906 -40836566 + (TTATA)n Simple_repeat Simple_repeat 4 113 0 337 353 22 0 chr11 107947329 107947465 -40836007 - L2 LINE L2 -1951 1363 1225 672 345 9 0 chr11 107947838 107948070 -40835402 - MIR SINE MIR 0 262 29 254 311 123 0 chr11 107948421 107948527 -40834945 + L2 LINE L2 3191 3309 -4 216 0 0 0 chr11 107948864 107948888 -40834584 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1967 320 134 24 chr11 107948994 107950128 -40833344 - L2 LINE L2 -1127 2187 929 1494 178 42 60 chr11 107950155 107950537 -40832935 - THE1C LTR MaLR 0 375 1 359 314 90 40 chr11 107951153 107951452 -40832020 + L2 LINE L2 823 1136 -2178 300 317 96 24 chr11 107951648 107951897 -40831575 + L2 LINE L2 2154 2420 -894 360 361 54 75 chr11 107952138 107952562 -40830910 + L2 LINE L2 2807 3221 -51 198 91 0 0 chr11 107952588 107952621 -40830851 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 183 80 0 0 chr11 107952973 107952998 -40830474 + (T)n Simple_repeat Simple_repeat 1 25 0 24 32 0 0 chr11 107953509 107953540 -40829932 + AT_rich Low_complexity Low_complexity 1 31 0 1539 201 7 3 chr11 107953635 107953928 -40829544 - AluJb SINE Alu -18 294 1 227 260 14 14 chr11 107954580 107954653 -40828819 + CT-rich Low_complexity Low_complexity 3 75 0 1065 93 0 0 chr11 107954655 107954806 -40828666 + (TCCCC)n Simple_repeat Simple_repeat 3 153 0 21 0 0 0 chr11 107954834 107954855 -40828617 + AT_rich Low_complexity Low_complexity 1 21 0 1521 231 29 0 chr11 107955233 107955584 -40827888 - MER67D LTR ERV1 0 514 154 362 303 117 26 chr11 107955704 107955935 -40827537 + L1ME LINE L1 5521 5772 -349 352 355 66 0 chr11 107956058 107956224 -40827248 - MIR SINE MIR -22 240 64 317 231 33 22 chr11 107957203 107957294 -40826178 - MER5A DNA MER1_type -89 100 9 313 319 112 5 chr11 107957704 107957892 -40825580 + L1MC/D LINE L1 5622 5829 -1979 487 261 141 139 chr11 107958182 107958658 -40824814 + MLT1F1 LTR MaLR 1 502 -65 278 297 52 19 chr11 107959404 107959430 -40824042 - L1ME LINE L1 -277 5885 5860 478 266 182 27 chr11 107959430 107959918 -40823554 - L1ME1 LINE L1 -310 5856 5305 454 298 83 17 chr11 107959944 107960246 -40823226 - L1ME1 LINE L1 -887 5259 4938 264 196 18 0 chr11 107960601 107960657 -40822815 - MLT1J1 LTR MaLR -387 59 3 321 269 101 52 chr11 107961009 107961201 -40822271 - L1MEc LINE L1 -788 1788 1522 197 412 0 18 chr11 107962062 107962176 -40821296 - L2 LINE L2 -296 2976 2865 195 69 0 0 chr11 107962533 107962562 -40820910 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1777 166 0 3 chr11 107962567 107962850 -40820622 - AluSx SINE Alu -30 282 1 905 202 16 5 chr11 107963738 107963926 -40819546 - MSTD LTR MaLR 0 396 207 392 263 20 0 chr11 107963950 107964049 -40819423 - MSTD LTR MaLR -326 102 2 7994 137 33 2 chr11 107966547 107967795 -40815677 - HSMAR1 DNA Mariner 0 1287 1 1862 205 3 3 chr11 107968775 107969141 -40814331 + MER47A DNA MER2_type 1 366 0 933 320 149 2 chr11 107969306 107969815 -40813657 + MER20B DNA MER1_type 1 584 -199 673 243 68 0 chr11 107969841 107969989 -40813483 + AluJb SINE Alu 137 294 -18 969 262 77 37 chr11 107970583 107970988 -40812484 - LTR52 LTR ERVL 0 421 1 3563 97 19 59 chr11 107971359 107971606 -40811866 - MER41A LTR ERV1 0 554 299 6100 33 1 0 chr11 107971606 107972330 -40811142 - L1PA5 LINE L1 0 6154 5430 3563 97 19 59 chr11 107972330 107972657 -40810815 - MER41A LTR ERV1 -255 299 3 391 237 84 15 chr11 107973009 107973140 -40810332 - MLT1J2 LTR MaLR -310 140 1 180 0 0 0 chr11 107973147 107973167 -40810305 + (A)n Simple_repeat Simple_repeat 1 20 0 180 337 22 22 chr11 107973643 107973732 -40809740 + L3 LINE CR1 1428 1516 -61 21 0 0 0 chr11 107973866 107973887 -40809585 + AT_rich Low_complexity Low_complexity 1 21 0 1646 256 76 28 chr11 107973920 107974459 -40809013 - MLT1F1 LTR MaLR -2 565 1 22 0 0 0 chr11 107974871 107974893 -40808579 + AT_rich Low_complexity Low_complexity 1 22 0 578 322 33 33 chr11 107975387 107975785 -40807687 + HAL1b LINE L1 212 609 -739 243 213 9 19 chr11 107977039 107977064 -40806408 + GA-rich Low_complexity Low_complexity 2 26 -82 189 94 0 0 chr11 107977064 107977096 -40806376 + (CAG)n Simple_repeat Simple_repeat 2 33 0 243 213 9 19 chr11 107977096 107977147 -40806325 + GA-rich Low_complexity Low_complexity 26 108 0 22 0 0 0 chr11 107977241 107977263 -40806209 + AT_rich Low_complexity Low_complexity 1 22 0 1459 197 36 88 chr11 107977372 107977906 -40805566 + LTR5 LTR ERVK 464 969 0 7865 50 2 1 chr11 107978490 107979501 -40803971 - L1P LINE L1 -783 5363 4352 864 117 0 0 chr11 107980145 107980273 -40803199 - L1PB4 LINE L1 0 6156 6029 2098 142 0 7 chr11 107980273 107980583 -40802889 - AluSx SINE Alu -4 308 1 203 373 69 32 chr11 107981154 107981532 -40801940 + L2 LINE L2 1945 2336 -978 219 69 0 0 chr11 107982555 107982584 -40800888 + (CATATA)n Simple_repeat Simple_repeat 2 30 0 1759 142 14 30 chr11 107982584 107982880 -40800592 - AluSq SINE Alu -20 293 3 339 327 38 25 chr11 107982897 107983056 -40800416 + MIR SINE MIR 100 260 -2 202 374 153 5 chr11 107983051 107983254 -40800218 - MIR SINE MIR -2 260 28 * 1734 151 38 0 chr11 107983636 107983927 -40799545 + AluSx SINE Alu 1 302 -10 995 194 33 9 chr11 107984285 107984496 -40798976 + MER20 DNA MER1_type 1 216 -3 21 0 0 0 chr11 107985273 107985294 -40798178 + AT_rich Low_complexity Low_complexity 1 21 0 2744 10 0 0 chr11 107986054 107986360 -40797112 - AluYa5 SINE Alu -5 306 1 288 0 0 0 chr11 107986818 107986850 -40796622 + (CA)n Simple_repeat Simple_repeat 2 33 0 1176 140 0 0 chr11 107986893 107987072 -40796400 + AluSg/x SINE Alu 130 308 -4 2150 92 7 0 chr11 107988619 107988923 -40794549 + AluY SINE Alu 1 306 -5 29 78 0 0 chr11 107989101 107989165 -40794307 + AT_rich Low_complexity Low_complexity 1 64 0 23 0 0 0 chr11 107989898 107989921 -40793551 + AT_rich Low_complexity Low_complexity 1 23 0 226 188 0 21 chr11 107990030 107990078 -40793394 + (TA)n Simple_repeat Simple_repeat 2 48 0 22 0 0 0 chr11 107990328 107990350 -40793122 + AT_rich Low_complexity Low_complexity 1 22 0 247 253 89 0 chr11 107990386 107990465 -40793007 - MIR SINE MIR -13 249 164 22 0 0 0 chr11 107991835 107991857 -40791615 + AT_rich Low_complexity Low_complexity 1 22 0 620 214 8 0 chr11 107993048 107993165 -40790307 - FLAM_C SINE Alu -15 118 1 252 173 25 12 chr11 107994028 107994098 -40789374 + (TA)n Simple_repeat Simple_repeat 2 75 -8 1891 100 78 4 chr11 107994098 107994368 -40789104 - AluSp SINE Alu -23 290 1 252 173 25 12 chr11 107994368 107994378 -40789094 + (TA)n Simple_repeat Simple_repeat 75 83 0 463 336 51 39 chr11 107994393 107994649 -40788823 - MIR SINE MIR -2 260 2 190 250 50 121 chr11 107995140 107995280 -40788192 - L2 LINE L2 -753 2561 2432 1454 216 24 0 chr11 107995715 107996011 -40787461 + AluJo SINE Alu 1 303 -9 579 220 0 0 chr11 107997646 107997814 -40785658 + CT-rich Low_complexity Low_complexity 1 168 0 478 315 32 30 chr11 107999546 107999788 -40783684 - MIR SINE MIR 0 262 21 4966 184 40 9 chr11 108000044 108001643 -40781829 - L1PA16 LINE L1 0 6166 4505 2306 92 0 7 chr11 108001643 108001949 -40781523 - AluY SINE Alu -7 304 1 4966 184 40 9 chr11 108001949 108002052 -40781420 - L1PA16 LINE L1 -1661 4505 4407 38 75 0 0 chr11 108003275 108003355 -40780117 + AT_rich Low_complexity Low_complexity 1 80 0 21 36 0 0 chr11 108003713 108003741 -40779731 + AT_rich Low_complexity Low_complexity 1 28 0 238 329 84 19 chr11 108005205 108005360 -40778112 + L2 LINE L2 2898 3062 -251 202 339 0 0 chr11 108005720 108005779 -40777693 - L2 LINE L2 -1 3271 3213 29 84 0 0 chr11 108006084 108006155 -40777317 + AT_rich Low_complexity Low_complexity 1 71 0 23 33 0 0 chr11 108006173 108006203 -40777269 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr11 108006647 108006670 -40776802 + AT_rich Low_complexity Low_complexity 1 23 0 221 339 118 0 chr11 108007057 108007184 -40776288 - MIR SINE MIR -14 248 107 230 260 20 0 chr11 108008308 108008358 -40775114 - L2 LINE L2 -12 3301 3251 1504 239 43 47 chr11 108008374 108008880 -40774592 - MLT1D LTR MaLR 0 505 2 2131 116 7 0 chr11 108008961 108009264 -40774208 + AluSp SINE Alu 1 305 -8 512 340 98 5 chr11 108009350 108009565 -40773907 - MIR SINE MIR -6 256 22 21 0 0 0 chr11 108010409 108010430 -40773042 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 108011409 108011430 -40772042 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr11 108012937 108012966 -40770506 + AT_rich Low_complexity Low_complexity 1 29 0 4388 169 38 15 chr11 108014319 108015244 -40768228 + L1PB4 LINE L1 5213 6155 -1 1521 233 106 75 chr11 108015244 108016086 -40767386 - L1MC5 LINE L1 -432 7529 6662 247 255 130 57 chr11 108017727 108017888 -40765584 - MIR SINE MIR -57 205 34 227 304 0 0 chr11 108017915 108017971 -40765501 + MIR SINE MIR 74 129 -133 371 380 37 11 chr11 108019117 108019304 -40764168 - MIR3 SINE MIR -1 207 16 2165 66 4 0 chr11 108019614 108019888 -40763584 + AluSc SINE Alu 13 287 -22 25 0 0 0 chr11 108019888 108019913 -40763559 + AT_rich Low_complexity Low_complexity 1 25 0 2152 108 0 16 chr11 108019949 108020264 -40763208 - AluSx SINE Alu -2 310 1 252 287 96 11 chr11 108020815 108020909 -40762563 - MIR SINE MIR -148 114 13 22 0 0 0 chr11 108021921 108021943 -40761529 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 108022661 108022682 -40760790 + AT_rich Low_complexity Low_complexity 1 21 0 6173 107 10 11 chr11 108023594 108024525 -40758947 - L1MA2 LINE L1 -1 6303 5374 180 0 0 0 chr11 108024625 108024645 -40758827 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 280 294 76 28 chr11 108025510 108025721 -40757751 + L1ME2 LINE L1 1572 1792 -4929 1938 149 0 0 chr11 108025722 108026017 -40757455 + AluSx SINE Alu 1 295 -17 1656 197 3 0 chr11 108026030 108026339 -40757133 + AluJb SINE Alu 3 312 0 398 297 117 21 chr11 108026352 108026591 -40756881 + L1ME2 LINE L1 1738 1999 -4541 413 317 114 25 chr11 108026764 108027045 -40756427 + L1ME2 LINE L1 3658 3963 -2577 337 287 143 8 chr11 108027116 108027374 -40756098 + L1ME2 LINE L1 5398 5690 -850 346 324 97 19 chr11 108027394 108027610 -40755862 + L1ME2 LINE L1 5706 5938 -622 299 308 31 40 chr11 108027617 108027841 -40755631 + L1ME2 LINE L1 6055 6276 -282 203 325 113 0 chr11 108028402 108028482 -40754990 + MIR SINE MIR 3 91 -171 2041 162 40 44 chr11 108028484 108029039 -40754433 - MLT2A2 LTR ERVL 0 554 1 380 295 101 0 chr11 108029039 108029188 -40754284 + MIR SINE MIR 89 252 -10 188 159 0 23 chr11 108030031 108030075 -40753397 + (CAT)n Simple_repeat Simple_repeat 3 45 0 561 15 0 0 chr11 108030318 108030384 -40753088 + (TG)n Simple_repeat Simple_repeat 2 67 0 2073 116 0 35 chr11 108030553 108030871 -40752601 - AluSq SINE Alu -4 309 3 26 0 0 0 chr11 108030934 108030960 -40752512 + AT_rich Low_complexity Low_complexity 1 26 0 651 151 93 58 chr11 108031187 108031392 -40752080 + L1MC3 LINE L1 6831 7042 -743 257 253 60 6 chr11 108031412 108031578 -40751894 + (TA)n Simple_repeat Simple_repeat 2 176 0 3168 188 72 12 chr11 108031581 108032330 -40751142 + L1MC3 LINE L1 6986 7779 -6 6864 64 2 3 chr11 108032357 108033996 -40749476 - L1PA7 LINE L1 0 6154 4512 244 391 0 0 chr11 108034497 108034584 -40748888 - L2 LINE L2 0 3313 3227 21 36 0 0 chr11 108034884 108034912 -40748560 + AT_rich Low_complexity Low_complexity 1 28 0 279 173 0 0 chr11 108035542 108035623 -40747849 + A-rich Low_complexity Low_complexity 1 81 0 744 303 64 56 chr11 108036440 108037160 -40746312 + L1M2 LINE L1 10 2069 -5512 226 324 0 0 chr11 108037988 108038062 -40745410 + L1 LINE L1 796 869 -5980 4367 206 26 0 chr11 108038062 108039011 -40744461 + L1PA15-16 LINE L1 2058 3030 -3819 1563 234 52 4 chr11 108039026 108039504 -40743968 + L1 LINE L1 3605 4105 -2743 329 203 108 0 chr11 108039555 108039629 -40743843 - L2 LINE L2 -5 3308 3227 5300 219 33 15 chr11 108040031 108041342 -40742130 - L1 LINE L1 -1774 4372 3039 620 205 0 8 chr11 108041349 108041476 -40741996 - L1P LINE L1 -2290 4559 4434 394 218 53 30 chr11 108041478 108041611 -40741861 - L1 LINE L1 -3118 3028 2893 798 238 12 1 chr11 108041617 108041856 -40741616 - L1PA15-16 LINE L1 -3826 3023 2783 595 301 93 30 chr11 108041973 108042209 -40741263 + MIR SINE MIR 11 261 -1 1881 164 3 10 chr11 108042315 108042619 -40740853 - AluSx SINE Alu -10 302 1 223 200 20 20 chr11 108042693 108042743 -40740729 - L2 LINE L2 0 3313 3264 220 271 51 0 chr11 108042719 108042778 -40740694 + L2 LINE L2 3251 3312 -1 * 432 326 144 9 chr11 108042876 108043091 -40740381 - MIR SINE MIR 0 262 19 403 126 72 117 chr11 108043239 108043350 -40740122 + MER58 DNA MER1_type 47 152 -2268 * 463 211 0 19 chr11 108043342 108043446 -40740026 + MER58 DNA MER1_type 2319 2420 0 21 36 0 0 chr11 108043683 108043711 -40739761 + AT_rich Low_complexity Low_complexity 1 28 0 1491 143 34 0 chr11 108044754 108045056 -40738416 + L1M1 LINE L1 5218 5528 -743 15427 106 15 5 chr11 108045150 108048276 -40735196 - L1PA7 LINE L1 -11 6143 3007 39 38 0 0 chr11 108048569 108048622 -40734850 + AT_rich Low_complexity Low_complexity 1 53 0 438 296 89 15 chr11 108049122 108049325 -40734147 - L2 LINE L2 -2123 1191 974 4432 37 2 2 chr11 108050250 108050789 -40732683 + L1PA4 LINE L1 5422 5960 -195 2699 32 9 3 chr11 108050889 108051228 -40732244 + L1PA4 LINE L1 5815 6155 0 25 0 0 0 chr11 108052441 108052466 -40731006 + AT_rich Low_complexity Low_complexity 1 25 0 233 122 54 40 chr11 108053385 108053459 -40730013 + GA-rich Low_complexity Low_complexity 2 76 0 306 290 0 0 chr11 108053717 108053786 -40729686 + L2 LINE L2 3241 3309 -4 1332 191 60 4 chr11 108055227 108055479 -40727993 + AluJo SINE Alu 7 272 -40 290 269 0 0 chr11 108055700 108055778 -40727694 + L1ME2 LINE L1 5900 5977 -187 27 29 0 0 chr11 108056275 108056309 -40727163 + AT_rich Low_complexity Low_complexity 1 34 0 1369 309 54 94 chr11 108059170 108059962 -40723510 + L2 LINE L2 750 1485 -1829 3092 132 28 8 chr11 108059962 108060455 -40723017 + LTR10B LTR ERV1 2 504 -1 1369 309 54 94 chr11 108060455 108060786 -40722686 + L2 LINE L2 1485 1828 -1486 701 231 118 9 chr11 108060843 108061055 -40722417 - L1ME1 LINE L1 -5 6161 5927 333 0 0 0 chr11 108061056 108061093 -40722379 + (TTTTA)n Simple_repeat Simple_repeat 3 39 0 597 211 9 0 chr11 108061094 108061208 -40722264 - AluJb SINE Alu -197 115 1 602 208 21 93 chr11 108061211 108061428 -40722044 - L1ME1 LINE L1 -237 5929 5733 1318 256 110 11 chr11 108061429 108061902 -40721570 + L2 LINE L2 1990 2509 -805 1200 210 13 4 chr11 108061907 108062140 -40721332 - MLT1A1 LTR MaLR -128 237 3 1208 234 44 10 chr11 108062142 108062437 -40721035 + MLT1A2 LTR MaLR 64 368 -6 903 296 47 58 chr11 108062443 108063014 -40720458 + L2 LINE L2 2755 3309 -4 2225 160 8 3 chr11 108063276 108063638 -40719834 - THE1B LTR MaLR 0 364 1 296 295 0 26 chr11 108064021 108064099 -40719373 + L2 LINE L2 3197 3272 0 22 0 0 0 chr11 108064525 108064547 -40718925 + AT_rich Low_complexity Low_complexity 1 22 0 2050 175 23 8 chr11 108064814 108064984 -40718488 - L1P4 LINE L1 -497 5669 5503 590 39 0 13 chr11 108064984 108065062 -40718410 + (TCTA)n Simple_repeat Simple_repeat 2 78 0 1837 121 4 18 chr11 108065062 108065342 -40718130 - AluSc SINE Alu -32 277 2 2050 175 23 8 chr11 108065342 108065907 -40717565 - L1P4 LINE L1 -662 5504 4730 384 327 124 5 chr11 108067185 108067387 -40716085 + MIR SINE MIR 28 253 -9 310 378 87 10 chr11 108068437 108068633 -40714839 - MIR SINE MIR -51 211 1 2411 137 8 3 chr11 108068657 108069030 -40714442 - THE1C LTR MaLR 0 375 1 9935 114 16 60 chr11 108069030 108070683 -40712789 - THE1C-int LTR MaLR 0 1580 1 2408 136 5 5 chr11 108070683 108071058 -40712414 - THE1C LTR MaLR 0 375 1 917 250 77 169 chr11 108071064 108071847 -40711625 - MER50 LTR ERV1 -23 711 1 279 54 0 0 chr11 108072036 108072073 -40711399 + (CA)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr11 108072193 108072214 -40711258 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr11 108072412 108072442 -40711030 + AT_rich Low_complexity Low_complexity 1 30 0 2086 102 0 3 chr11 108073438 108073744 -40709728 - AluSq SINE Alu 0 307 3 384 316 182 5 chr11 108073810 108073997 -40709475 + MIR SINE MIR 28 247 -15 180 0 0 0 chr11 108074002 108074022 -40709450 + (ATG)n Simple_repeat Simple_repeat 1 20 0 1457 229 78 39 chr11 108074595 108074955 -40708517 - L1ME1 LINE L1 -4 6162 5777 426 150 12 12 chr11 108074955 108075035 -40708437 - MADE1 DNA Mariner 0 80 1 1457 229 78 39 chr11 108075035 108075159 -40708313 - L1ME1 LINE L1 -389 5777 5659 1702 136 57 0 chr11 108075861 108076126 -40707346 + AluSx SINE Alu 1 280 -32 243 0 0 0 chr11 108076126 108076153 -40707319 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 501 62 0 0 chr11 108076152 108076217 -40707255 + (TA)n Simple_repeat Simple_repeat 2 66 0 29 47 0 0 chr11 108076351 108076394 -40707078 + AT_rich Low_complexity Low_complexity 1 43 0 749 220 16 27 chr11 108076455 108076641 -40706831 - MER105 DNA DNA -2 202 19 325 288 119 19 chr11 108076641 108076801 -40706671 - L1ME4a LINE L1 -251 5870 5695 221 139 23 0 chr11 108076813 108076856 -40706616 + (TG)n Simple_repeat Simple_repeat 2 45 0 317 316 36 22 chr11 108076864 108077003 -40706469 - L1ME4a LINE L1 -444 5677 5537 217 298 106 66 chr11 108079936 108080134 -40703338 - MIR SINE MIR -4 258 53 32 43 0 0 chr11 108080869 108080915 -40702557 + AT_rich Low_complexity Low_complexity 1 46 0 869 222 13 53 chr11 108081253 108081478 -40701994 + MER20 DNA MER1_type 4 219 0 794 240 67 67 chr11 108081917 108082288 -40701184 - L2 LINE L2 -109 3204 2834 680 276 62 0 chr11 108082564 108082774 -40700698 + MIR SINE MIR 29 251 -11 7359 30 1 0 chr11 108083873 108084748 -40698724 + L1PA4 LINE L1 5269 6144 -11 257 250 0 0 chr11 108084901 108084965 -40698507 + (TA)n Simple_repeat Simple_repeat 2 65 0 2448 54 3 0 chr11 108086115 108086431 -40697041 - AluY SINE Alu 0 311 1 880 158 40 34 chr11 108086555 108086732 -40696740 - AluJo SINE Alu -23 289 112 303 254 74 59 chr11 108086905 108087049 -40696423 - MER5B DNA MER1_type -27 162 7 477 265 14 27 chr11 108087696 108087843 -40695629 - MARNA DNA Mariner -21 565 421 254 326 130 14 chr11 108087925 108088063 -40695409 - MIR SINE MIR -1 261 108 1157 155 5 10 chr11 108089038 108089238 -40694234 + MST-int LTR MaLR 1254 1452 -199 1455 163 137 24 chr11 108089296 108089633 -40693839 - THE1C LTR MaLR 0 375 1 4589 169 11 19 chr11 108089633 108090471 -40693001 - THE1C-int LTR MaLR 0 1580 750 637 283 50 0 chr11 108090648 108090828 -40692644 - MIR SINE MIR -2 260 72 22 56 0 0 chr11 108092261 108092297 -40691175 + AT_rich Low_complexity Low_complexity 1 36 0 270 0 0 0 chr11 108092583 108092613 -40690859 + (A)n Simple_repeat Simple_repeat 1 30 0 217 328 149 15 chr11 108092860 108093055 -40690417 + L2 LINE L2 1369 1589 -1725 264 192 27 14 chr11 108093245 108093318 -40690154 - L1M4 LINE L1 -3801 2345 2272 423 350 32 0 chr11 108093819 108093942 -40689530 + L2 LINE L2 3144 3270 -2 286 279 15 0 chr11 108094225 108094293 -40689179 + L2 LINE L2 3006 3074 -198 248 355 66 16 chr11 108094837 108095020 -40688452 + LTR16C LTR ERVL 300 491 0 22603 38 3 2 chr11 108095475 108098294 -40685178 + L1P LINE L1 2486 5308 -838 3753 158 20 57 chr11 108098394 108099130 -40684342 - MSTA-int LTR MaLR -869 711 3 1727 165 144 21 chr11 108099131 108099512 -40683960 - MSTA LTR MaLR 0 428 1 641 183 10 0 chr11 108099680 108099784 -40683688 + Tigger3(Golem) DNA MER2_type 1 105 -2924 3865 135 64 0 chr11 108099795 108100482 -40682990 + Tigger3(Golem) DNA MER2_type 2298 3028 -1 226 319 50 34 chr11 108101048 108101167 -40682305 - L2 LINE L2 -276 3037 2917 598 248 209 5 chr11 108101540 108101750 -40681722 + MIR SINE MIR 10 262 0 267 192 0 55 chr11 108102765 108102838 -40680634 - LTR66 LTR ERVL -162 448 380 * 2662 198 16 21 chr11 108102833 108103344 -40680128 - MLT2B3 LTR ERVL -46 508 1 2163 77 0 4 chr11 108104345 108104618 -40678854 - AluY SINE Alu -23 288 17 1765 161 10 29 chr11 108105680 108105991 -40677481 + AluSx SINE Alu 1 305 -7 277 93 80 13 chr11 108106027 108106102 -40677370 + A-rich Low_complexity Low_complexity 5 84 0 210 71 0 0 chr11 108106190 108106218 -40677254 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 2391 216 141 54 chr11 108106525 108107372 -40676100 - LTR28 LTR ERV1 0 1020 1 1308 335 22 24 chr11 108107478 108108072 -40675400 + L2 LINE L2 633 1225 -2089 808 291 95 14 chr11 108108175 108108522 -40674950 + L2 LINE L2 1553 1927 -1387 315 329 95 15 chr11 108108865 108109002 -40674470 - L2 LINE L2 0 3272 3125 373 226 24 6 chr11 108109096 108109264 -40674208 + (TA)n Simple_repeat Simple_repeat 1 171 0 264 342 59 20 chr11 108109473 108109675 -40673797 + MIR SINE MIR 47 256 -6 24 32 0 0 chr11 108111062 108111093 -40672379 + AT_rich Low_complexity Low_complexity 1 31 0 513 328 131 41 chr11 108111138 108111550 -40671922 - L2 LINE L2 -1 3312 2864 27 49 0 0 chr11 108111866 108111907 -40671565 + AT_rich Low_complexity Low_complexity 1 41 0 366 264 0 64 chr11 108112061 108112186 -40671286 + MER94 DNA DNA 1 117 -17 6377 70 3 6 chr11 108112260 108113884 -40669588 - L1PA8 LINE L1 -19 6153 4537 1355 78 0 0 chr11 108113884 108114077 -40669395 + L1P LINE L1 2968 3160 -2986 3850 88 8 2 chr11 108114081 108114607 -40668865 + L1P LINE L1 3980 4508 -1638 276 30 0 0 chr11 108115213 108115246 -40668226 + (TG)n Simple_repeat Simple_repeat 2 34 0 325 289 124 36 chr11 108115262 108115456 -40668016 - MIR SINE MIR 0 262 52 23 0 0 0 chr11 108116705 108116728 -40666744 + AT_rich Low_complexity Low_complexity 1 23 0 21 82 0 0 chr11 108116785 108116834 -40666638 + AT_rich Low_complexity Low_complexity 1 49 0 401 233 233 0 chr11 108118371 108118487 -40664985 + MIR SINE MIR 97 239 -23 343 298 92 74 chr11 108118498 108118945 -40664527 + LTR16A1 LTR ERVL 3 457 0 2427 81 0 10 chr11 108119925 108120233 -40663239 + AluY SINE Alu 1 305 -6 237 367 156 0 chr11 108120439 108120567 -40662905 - MIR SINE MIR -16 246 99 244 401 42 0 chr11 108120583 108120731 -40662741 + MIR SINE MIR 7 124 -84 336 346 7 29 chr11 108120798 108120934 -40662538 - MIR SINE MIR -123 139 7 352 365 37 0 chr11 108121663 108121770 -40661702 - L2 LINE L2 0 3272 3162 774 245 0 0 chr11 108122260 108122423 -40661049 - FRAM SINE Alu -2 164 2 414 243 47 20 chr11 108123117 108123265 -40660207 + L1MEd LINE L1 27 178 -5941 1426 102 5 0 chr11 108123597 108123813 -40659659 - L1P LINE L1 -1021 5125 4909 545 68 0 0 chr11 108123813 108123887 -40659585 + L1PA7 LINE L1 6081 6154 0 50 59 0 0 chr11 108124832 108124917 -40658555 + AT_rich Low_complexity Low_complexity 1 85 0 34 0 0 0 chr11 108125090 108125124 -40658348 + AT_rich Low_complexity Low_complexity 1 34 0 2049 108 3 20 chr11 108125296 108125591 -40657881 - AluY SINE Alu -21 290 1 23 0 0 0 chr11 108125597 108125620 -40657852 + AT_rich Low_complexity Low_complexity 1 23 0 186 209 0 0 chr11 108127586 108127629 -40655843 + (TATG)n Simple_repeat Simple_repeat 3 45 0 209 138 52 17 chr11 108127687 108127745 -40655727 + (TA)n Simple_repeat Simple_repeat 1 60 0 199 299 103 0 chr11 108127786 108127873 -40655599 - MIR SINE MIR -64 144 49 423 342 63 53 chr11 108127894 108128306 -40655166 - L2 LINE L2 -674 2640 2225 353 338 159 36 chr11 108128761 108129258 -40654214 + L2 LINE L2 1025 1582 -1732 205 344 52 0 chr11 108129299 108129395 -40654077 + L2 LINE L2 1902 2002 -1312 196 288 36 101 chr11 108130488 108130648 -40652824 - L2 LINE L2 -1125 2189 2045 2110 125 0 7 chr11 108130648 108130953 -40652519 + AluSx SINE Alu 1 303 -9 196 288 36 101 chr11 108130953 108131011 -40652461 - L2 LINE L2 -1269 2045 1985 327 25 0 0 chr11 108131700 108131740 -40651732 + (TG)n Simple_repeat Simple_repeat 2 41 0 2012 125 0 10 chr11 108132629 108132924 -40650548 - AluY SINE Alu -17 294 3 23 33 0 0 chr11 108133256 108133286 -40650186 + AT_rich Low_complexity Low_complexity 1 30 0 282 56 0 0 chr11 108133317 108133353 -40650119 + (CA)n Simple_repeat Simple_repeat 2 37 0 2332 75 0 0 chr11 108134047 108134370 -40649102 + AluY SINE Alu 1 323 0 265 158 123 0 chr11 108134370 108134427 -40649045 - MLT1K LTR MaLR -14 574 511 216 0 0 0 chr11 108134605 108134629 -40648843 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 255 293 53 0 chr11 108134700 108134775 -40648697 - MLT1K LTR MaLR -367 221 143 193 425 12 25 chr11 108135374 108135534 -40647938 - MER5A DNA MER1_type -6 183 26 379 308 19 0 chr11 108136169 108136276 -40647196 + MIR3 SINE MIR 63 171 -37 2036 157 15 6 chr11 108136282 108136614 -40646858 - MER1B DNA MER1_type -2 335 1 296 259 34 34 chr11 108137141 108137288 -40646184 - MER69 DNA AcHobo 0 2526 2380 198 401 21 14 chr11 108137998 108138140 -40645332 - MIR3 SINE MIR -21 187 45 21 36 0 0 chr11 108138180 108138208 -40645264 + AT_rich Low_complexity Low_complexity 1 28 0 237 330 56 20 chr11 108138736 108138933 -40644539 + L2 LINE L2 2184 2387 -927 1842 144 67 28 chr11 108139491 108139852 -40643620 - THE1C LTR MaLR 0 375 1 332 134 247 31 chr11 108139852 108139949 -40643523 - THE1C-int LTR MaLR 0 1580 1463 1928 39 0 0 chr11 108139952 108140210 -40643262 - L1P LINE L1 -2848 3298 3041 16863 36 0 0 chr11 108140210 108143050 -40640422 + L1PA3 LINE L1 3333 6173 0 5841 152 25 10 chr11 108143050 108144035 -40639437 - THE1C-int LTR MaLR -104 1476 477 1065 222 60 19 chr11 108144035 108144301 -40639171 - THE1C LTR MaLR -96 279 3 210 314 0 29 chr11 108144472 108144542 -40638930 + L2 LINE L2 3246 3313 0 276 367 27 7 chr11 108147148 108147295 -40636177 + L2 LINE L2 2904 3053 -219 390 301 91 65 chr11 108147576 108147915 -40635557 - LTR33 LTR ERVL -172 349 2 419 236 81 32 chr11 108147916 108148039 -40635433 + L2 LINE L2 3143 3271 -1 864 151 0 13 chr11 108148296 108148448 -40635024 - L1MB1 LINE L1 -14 6175 6026 13255 142 39 30 chr11 108148826 108151220 -40632252 - Tigger1 DNA MER2_type 0 2418 3 479 343 101 32 chr11 108152236 108152644 -40630828 + L3b LINE CR1 1102 1537 -46 348 244 167 18 chr11 108153093 108153261 -40630211 - LTR50 LTR ERVL -103 692 500 * 452 222 296 40 chr11 108153247 108153544 -40629928 - LTR50 LTR ERVL -399 396 24 2029 159 6 0 chr11 108155871 108156210 -40627262 + L1PB4 LINE L1 5816 6156 0 1077 76 0 0 chr11 108157317 108157449 -40626023 + AluSc SINE Alu 157 288 -21 26 0 0 0 chr11 108157449 108157475 -40625997 + AT_rich Low_complexity Low_complexity 1 26 0 555 204 12 78 chr11 108160211 108160378 -40623094 + MER104 DNA Tc2 22 177 -3 2171 225 62 41 chr11 108161003 108162242 -40621230 - L1ME1 LINE L1 -5 6397 5146 * 3396 188 60 1 chr11 108162228 108163497 -40619975 - L1MA6 LINE L1 -319 5981 4646 2295 140 17 0 chr11 108163493 108163899 -40619573 + L1 LINE L1 4196 4608 -1538 * 1842 262 28 0 chr11 108163908 108164489 -40618983 - L1ME1 LINE L1 -3222 3160 2564 1685 173 39 90 chr11 108164489 108165054 -40618418 - MLT2A2 LTR ERVL -8 546 1 691 220 134 19 chr11 108165071 108165339 -40618133 - L1ME1 LINE L1 -3992 2571 2273 1356 299 48 19 chr11 108165354 108166162 -40617310 - L1ME1 LINE L1 -4484 2079 1083 5483 190 18 13 chr11 108166195 108166893 -40616579 - L1MC1 LINE L1 0 6333 5640 2145 125 23 47 chr11 108166893 108167277 -40616195 + THE1C LTR MaLR 1 375 0 10153 123 10 33 chr11 108167279 108168894 -40614578 + THE1C-int LTR MaLR 3 1580 0 1922 159 32 19 chr11 108168894 108169264 -40614208 + THE1C LTR MaLR 1 375 0 5483 190 18 13 chr11 108169264 108169823 -40613649 - L1MC1 LINE L1 -692 5641 5067 2602 276 42 17 chr11 108169838 108170763 -40612709 - L1ME1 LINE L1 -5340 1223 276 287 346 44 25 chr11 108171161 108171320 -40612152 + MIR SINE MIR 41 202 -60 2440 47 7 3 chr11 108172161 108172457 -40611015 + AluY SINE Alu 1 297 -14 25 65 0 0 chr11 108172616 108172662 -40610810 + AT_rich Low_complexity Low_complexity 1 46 0 1391 193 19 19 chr11 108172965 108173234 -40610238 + AluJo SINE Alu 13 281 -31 230 274 95 0 chr11 108173572 108173656 -40609816 + MIR SINE MIR 100 191 -71 7007 53 29 0 chr11 108174068 108174924 -40608548 + MER11D LTR ERVK 17 897 0 27 29 0 0 chr11 108175358 108175392 -40608080 + AT_rich Low_complexity Low_complexity 1 34 0 274 357 105 20 chr11 108176346 108176640 -40606832 + L2 LINE L2 949 1267 -2047 358 304 74 34 chr11 108177012 108177160 -40606312 + MIR SINE MIR 96 249 -13 257 360 93 31 chr11 108177152 108177441 -40606031 + L2 LINE L2 2407 2713 -601 * 670 283 17 0 chr11 108177465 108177645 -40605827 + MER58A DNA MER1_type 42 224 0 34700 39 2 1 chr11 108177828 108183984 -40599488 - L1PA4 LINE L1 0 6155 3 228 318 15 0 chr11 108184254 108184320 -40599152 + L2 LINE L2 3247 3313 0 206 395 61 34 chr11 108186437 108186731 -40596741 + L2 LINE L2 2869 3170 -102 1213 111 19 48 chr11 108186751 108186958 -40596514 - L1PB4 LINE L1 -1 6155 5955 202 190 17 17 chr11 108186987 108187045 -40596427 + (TA)n Simple_repeat Simple_repeat 1 58 0 2619 172 25 30 chr11 108187045 108187674 -40595798 - L1PB4 LINE L1 -360 5796 5171 24 0 0 0 chr11 108188572 108188596 -40594876 + AT_rich Low_complexity Low_complexity 1 24 0 236 293 26 26 chr11 108188807 108188823 -40594649 + L1PB1 LINE L1 5903 5918 -233 831 29 20 0 chr11 108188823 108188925 -40594547 - L1PA3 LINE L1 -3 6152 6049 1144 48 0 0 chr11 108188925 108189070 -40594402 + L1PA3 LINE L1 5919 6063 -92 22 35 0 0 chr11 108189450 108189479 -40593993 + AT_rich Low_complexity Low_complexity 1 29 0 985 314 76 45 chr11 108189643 108190498 -40592974 + L1ME2 LINE L1 100 994 -5402 2564 219 23 29 chr11 108190498 108190712 -40592760 + MLT2B3 LTR ERVL 1 215 -339 2146 104 3 0 chr11 108190712 108191011 -40592461 + AluY SINE Alu 1 300 -11 2564 219 23 29 chr11 108191011 108191353 -40592119 + MLT2B3 LTR ERVL 215 554 0 985 314 76 45 chr11 108191353 108191551 -40591921 + L1ME2 LINE L1 994 1185 -5211 331 311 78 16 chr11 108191604 108191797 -40591675 + L1ME2 LINE L1 1210 1414 -4801 1065 246 49 81 chr11 108191799 108192442 -40591030 + L1ME2 LINE L1 1589 2233 -3982 7638 26 0 0 chr11 108192442 108193497 -40589975 + L1PA3 LINE L1 5098 6152 -3 1065 246 49 81 chr11 108193497 108193922 -40589550 + L1ME2 LINE L1 2233 2670 -3545 2118 246 65 53 chr11 108193940 108196986 -40586486 + L1ME2 LINE L1 2627 6128 -105 580 282 182 0 chr11 108196993 108197213 -40586259 - MLT1H LTR MaLR -289 260 1 207 0 0 0 chr11 108197890 108197913 -40585559 + (A)n Simple_repeat Simple_repeat 1 23 0 275 314 26 45 chr11 108198316 108198580 -40584892 - L1MCa LINE L1 -4550 1876 1477 478 294 34 108 chr11 108198609 108199027 -40584445 - L1MCa LINE L1 -4867 1549 1163 23 68 0 0 chr11 108199776 108199820 -40583652 + AT_rich Low_complexity Low_complexity 1 44 0 208 123 25 37 chr11 108200047 108200128 -40583344 + (TA)n Simple_repeat Simple_repeat 1 80 0 281 256 11 22 chr11 108200263 108200353 -40583119 - MIR SINE MIR -1 261 173 263 238 213 25 chr11 108200371 108200493 -40582979 - L2 LINE L2 0 3313 3169 * 395 263 60 15 chr11 108200491 108200624 -40582848 - MIR SINE MIR -114 148 10 371 267 228 15 chr11 108200717 108200919 -40582553 - MIR SINE MIR -6 256 12 314 225 98 58 chr11 108201425 108201598 -40581874 + L1ME LINE L1 5553 5732 -389 249 194 42 14 chr11 108201930 108202002 -40581470 + L1MC/D LINE L1 4795 4868 -1278 908 289 51 53 chr11 108202327 108202789 -40580683 + L1MC/D LINE L1 5261 5723 -2085 1908 132 13 23 chr11 108202789 108203093 -40580379 + AluSx SINE Alu 2 302 -10 908 289 51 53 chr11 108203093 108203195 -40580277 + L1MC/D LINE L1 5723 5824 -1984 27 62 0 0 chr11 108203219 108203267 -40580205 + AT_rich Low_complexity Low_complexity 1 48 0 2430 78 0 3 chr11 108203494 108203803 -40579669 - AluSq SINE Alu -5 308 1 664 294 51 5 chr11 108204587 108204801 -40578671 + MER58A DNA MER1_type 1 224 0 254 279 0 16 chr11 108206501 108206562 -40576910 + AluS SINE Alu 3 62 -246 758 229 44 16 chr11 108206585 108206768 -40576704 + AluJb SINE Alu 120 307 -5 370 287 134 38 chr11 108208314 108208523 -40574949 - MIR SINE MIR -6 256 28 233 324 103 35 chr11 108208986 108209131 -40574341 - MIR SINE MIR -59 203 49 21 36 0 0 chr11 108209845 108209873 -40573599 + AT_rich Low_complexity Low_complexity 1 28 0 255 191 0 0 chr11 108210154 108210217 -40573255 + (TG)n Simple_repeat Simple_repeat 2 64 0 297 283 116 52 chr11 108211743 108211916 -40571556 + MIR SINE MIR 76 259 -3 1483 210 16 19 chr11 108212004 108212313 -40571159 - AluJb SINE Alu -2 310 3 189 0 0 0 chr11 108215851 108215872 -40567600 + (A)n Simple_repeat Simple_repeat 1 21 0 1914 151 7 0 chr11 108215916 108216207 -40567265 - AluSx SINE Alu -19 293 1 24 53 0 0 chr11 108216296 108216334 -40567138 + AT_rich Low_complexity Low_complexity 1 38 0 39 74 0 0 chr11 108216501 108216582 -40566890 + AT_rich Low_complexity Low_complexity 1 81 0 25 0 0 0 chr11 108217969 108217994 -40565478 + AT_rich Low_complexity Low_complexity 1 25 0 2026 195 102 41 chr11 108218237 108218821 -40564651 - MER39 LTR ERV1 -31 676 1 22 0 0 0 chr11 108219529 108219551 -40563921 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr11 108220332 108220354 -40563118 + AT_rich Low_complexity Low_complexity 1 22 0 1435 169 23 73 chr11 108220400 108220702 -40562770 + AluJb SINE Alu 1 287 -25 268 316 0 0 chr11 108221552 108221631 -40561841 + MIR SINE MIR 174 252 -10 318 194 0 0 chr11 108221639 108221706 -40561766 + (ATGGTG)n Simple_repeat Simple_repeat 2 68 0 2105 151 11 19 chr11 108221709 108222087 -40561385 - THE1C LTR MaLR 0 375 1 218 248 86 119 chr11 108223740 108223950 -40559522 + L3b LINE CR1 1195 1397 -186 32 81 0 0 chr11 108224002 108224076 -40559396 + AT_rich Low_complexity Low_complexity 1 74 0 1452 201 0 33 chr11 108225153 108225452 -40558020 - AluJb SINE Alu -23 289 1 272 222 42 0 chr11 108225594 108225666 -40557806 + L1ME4a LINE L1 5967 6041 -80 2051 186 24 34 chr11 108225687 108225894 -40557578 - MSTB LTR MaLR -13 413 210 2172 120 0 3 chr11 108225894 108226193 -40557279 + AluSq SINE Alu 1 298 -15 2051 186 24 34 chr11 108226193 108226399 -40557073 - MSTB LTR MaLR -216 210 4 195 100 0 0 chr11 108227540 108227570 -40555902 + (TAGG)n Simple_repeat Simple_repeat 2 31 0 884 233 61 60 chr11 108227718 108228172 -40555300 - LTR48B LTR ERV1 -11 633 124 321 306 0 28 chr11 108228147 108228255 -40555217 - MER34 LTR ERV1 -437 105 1 * 203 314 110 47 chr11 108228503 108228694 -40554778 - MIR SINE MIR -56 206 4 38 22 0 0 chr11 108229045 108229090 -40554382 + AT_rich Low_complexity Low_complexity 1 45 0 31 26 0 0 chr11 108229146 108229184 -40554288 + AT_rich Low_complexity Low_complexity 1 38 0 227 308 0 0 chr11 108229360 108229438 -40554034 + L1MC4 LINE L1 6614 6691 -1351 616 296 131 17 chr11 108229741 108230400 -40553072 + L1M4 LINE L1 2994 3727 -2419 4478 212 29 91 chr11 108230401 108231964 -40551508 + L1 LINE L1 2395 3860 -2286 1156 133 0 0 chr11 108231960 108232140 -40551332 - L1PA10 LINE L1 -759 5387 5208 * 5307 107 23 3 chr11 108232140 108232913 -40550559 + L1PA10 LINE L1 5365 6153 -15 1269 195 15 0 chr11 108232927 108233189 -40550283 + L1P LINE L1 3851 4116 -2030 674 192 17 6 chr11 108233276 108233453 -40550019 + CT-rich Low_complexity Low_complexity 2 180 0 701 219 7 0 chr11 108233453 108233590 -40549882 - MLT1A1 LTR MaLR -56 309 172 604 363 57 29 chr11 108233736 108234280 -40549192 + L2 LINE L2 2612 3181 -132 2143 136 0 0 chr11 108234280 108234589 -40548883 - AluSg SINE Alu -1 309 1 604 363 57 29 chr11 108234589 108234722 -40548750 + L2 LINE L2 3181 3309 -4 1631 178 7 20 chr11 108236136 108236429 -40547043 - AluJo SINE Alu -23 289 1 188 331 40 46 chr11 108236598 108236749 -40546723 + MER5A DNA MER1_type 26 175 -14 23 0 0 0 chr11 108236969 108236992 -40546480 + AT_rich Low_complexity Low_complexity 1 23 0 725 184 6 0 chr11 108237519 108237682 -40545790 + GA-rich Low_complexity Low_complexity 1 164 0 790 273 6 0 chr11 108238892 108239064 -40544408 + MER45A DNA AcHobo 1 173 -5 431 362 17 0 chr11 108239071 108239248 -40544224 + MIR SINE MIR 64 243 -19 492 247 0 0 chr11 108240080 108240177 -40543295 - MIR3 SINE MIR -25 183 87 1074 285 89 17 chr11 108241491 108241970 -40541502 - MLT1H LTR MaLR -9 586 5 385 313 0 9 chr11 108242022 108242099 -40541373 - MIR SINE MIR -69 139 62 391 194 204 0 chr11 108242099 108242192 -40541280 - MER81 DNA DNA -2 112 1 385 313 0 9 chr11 108242192 108242226 -40541246 - MIR SINE MIR -146 62 29 5524 116 20 1 chr11 108244446 108245308 -40538164 - L1PB2 LINE L1 0 6151 5274 24 0 0 0 chr11 108245570 108245594 -40537878 + AT_rich Low_complexity Low_complexity 1 24 0 248 227 91 30 chr11 108245775 108245841 -40537631 - L3 LINE CR1 -27 1550 1481 203 322 0 0 chr11 108245845 108245904 -40537568 + MIR3 SINE MIR 98 156 -52 1908 136 49 0 chr11 108246957 108247243 -40536229 - AluSx SINE Alu -12 300 1 248 341 0 0 chr11 108247333 108247418 -40536054 - MIR SINE MIR -1 261 177 238 317 40 20 chr11 108248015 108248116 -40535356 - MIR SINE MIR -140 122 20 21 36 0 0 chr11 108250171 108250199 -40533273 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr11 108251571 108251610 -40531862 + AT_rich Low_complexity Low_complexity 1 39 0 1970 120 4 0 chr11 108252011 108252311 -40531161 + AluSg SINE Alu 3 303 0 1814 156 3 28 chr11 108252759 108253079 -40530393 + AluJb SINE Alu 1 312 0 1325 202 22 0 chr11 108254493 108254770 -40528702 - L1MB1 LINE L1 0 6168 5886 1108 266 67 23 chr11 108254862 108255253 -40528219 + MLT1I LTR MaLR 2 409 0 571 193 69 119 chr11 108255974 108256176 -40527296 + MER3 DNA MER1_type 7 198 -11 306 0 0 0 chr11 108256280 108256314 -40527158 + (A)n Simple_repeat Simple_repeat 1 34 0 326 209 17 0 chr11 108256955 108257022 -40526450 - FRAM/FAM SINE Alu -107 59 2 195 302 32 0 chr11 108257114 108257177 -40526295 + MER5A DNA MER1_type 26 90 -99 1085 178 14 10 chr11 108257848 108258056 -40525416 - MER3 DNA MER1_type 0 209 1 519 135 0 0 chr11 108258554 108258650 -40524822 + (A)n Simple_repeat Simple_repeat 1 96 0 21 36 0 0 chr11 108259612 108259640 -40523832 + AT_rich Low_complexity Low_complexity 1 28 0 199 385 26 0 chr11 108259839 108259917 -40523555 + L2 LINE L2 2959 3038 -234 384 281 41 8 chr11 108259924 108260045 -40523427 - MIR SINE MIR -6 256 132 261 83 0 0 chr11 108260251 108260287 -40523185 + (A)n Simple_repeat Simple_repeat 1 36 0 31 26 0 0 chr11 108260822 108260860 -40522612 + AT_rich Low_complexity Low_complexity 1 38 0 25 0 0 0 chr11 108262200 108262225 -40521247 + AT_rich Low_complexity Low_complexity 1 25 0 247 281 135 31 chr11 108262601 108262697 -40520775 + MIR SINE MIR 150 255 -7 21 57 0 0 chr11 108263922 108263957 -40519515 + AT_rich Low_complexity Low_complexity 1 35 0 382 289 165 20 chr11 108265119 108265476 -40517996 - L1ME4a LINE L1 -205 5916 5508 28 29 0 0 chr11 108265967 108266002 -40517470 + AT_rich Low_complexity Low_complexity 1 35 0 1569 215 51 49 chr11 108266092 108266614 -40516858 - LTR29 LTR ERV1 0 653 102 397 278 61 0 chr11 108266696 108266811 -40516661 - MER34 LTR ERV1 -420 122 1 553 294 46 34 chr11 108266811 108267049 -40516423 - L2 LINE L2 -28 3285 3045 2136 193 50 66 chr11 108267158 108267676 -40515796 - MLT2B3 LTR ERVL -42 512 3 422 291 142 49 chr11 108267678 108268081 -40515391 - L2 LINE L2 -264 3049 2601 26 50 0 0 chr11 108268905 108268945 -40514527 + AT_rich Low_complexity Low_complexity 1 40 0 744 319 42 4 chr11 108269163 108269404 -40514068 - MIR SINE MIR 0 262 13 855 233 45 11 chr11 108270034 108270210 -40513262 - MER5A DNA MER1_type 0 189 8 3190 147 28 0 chr11 108270309 108270847 -40512625 - L1PA16 LINE L1 -5 6161 5609 3713 259 35 23 chr11 108270849 108272058 -40511414 - L1P LINE L1 -2904 3242 2014 1428 202 0 63 chr11 108272058 108272375 -40511097 - AluJb SINE Alu -15 297 1 3713 259 35 23 chr11 108272375 108272474 -40510998 - L1P LINE L1 -4132 2014 1918 181 410 49 16 chr11 108272635 108272757 -40510715 + L3b LINE CR1 1428 1553 -30 2070 136 0 13 chr11 108272780 108273097 -40510375 - AluSq SINE Alu 0 313 1 788 318 68 20 chr11 108273152 108273504 -40509968 + L2 LINE L2 2155 2523 -791 761 261 71 62 chr11 108273533 108273855 -40509617 + MLT1D LTR MaLR 7 331 -174 378 339 41 86 chr11 108273862 108274281 -40509191 + L2 LINE L2 2908 3307 -6 228 35 0 0 chr11 108274964 108274993 -40508479 + (TG)n Simple_repeat Simple_repeat 2 30 0 429 314 17 8 chr11 108275409 108275527 -40507945 - L2 LINE L2 0 3272 3154 733 312 107 39 chr11 108276237 108276676 -40506796 - L2 LINE L2 -577 2737 2269 283 298 105 53 chr11 108277357 108277528 -40505944 + MIR SINE MIR 75 254 -8 204 293 0 0 chr11 108277532 108277590 -40505882 + (TAG)n Simple_repeat Simple_repeat 1 58 0 23 0 0 0 chr11 108278160 108278183 -40505289 + AT_rich Low_complexity Low_complexity 1 23 0 363 267 217 12 chr11 108279483 108279644 -40503828 + MIR SINE MIR 57 250 -12 314 365 77 0 chr11 108279700 108279804 -40503668 + L2 LINE L2 3148 3259 -13 22 35 0 0 chr11 108280176 108280205 -40503267 + AT_rich Low_complexity Low_complexity 1 29 0 2143 128 0 0 chr11 108280313 108280611 -40502861 - AluY SINE Alu -13 298 1 21 82 0 0 chr11 108281703 108281752 -40501720 + AT_rich Low_complexity Low_complexity 1 49 0 248 364 0 11 chr11 108282506 108282594 -40500878 - L2 LINE L2 0 3272 3186 254 263 213 0 chr11 108282762 108282842 -40500630 + MIR SINE MIR 30 126 -82 268 334 134 37 chr11 108282957 108283391 -40500081 - L2 LINE L2 -579 2735 2260 635 342 34 22 chr11 108283427 108283696 -40499776 - L2 LINE L2 0 3313 3042 5092 300 164 19 chr11 108283701 108284718 -40498754 - L2 LINE L2 -407 2907 2039 1944 132 51 3 chr11 108284718 108285014 -40498458 + AluSx SINE Alu 1 310 -2 5092 300 164 19 chr11 108285014 108286514 -40496958 - L2 LINE L2 -1275 2039 25 234 338 0 0 chr11 108286757 108286825 -40496647 + L2 LINE L2 3205 3272 0 2787 154 29 72 chr11 108286934 108287449 -40496023 + MLT2B3 LTR ERVL 1 490 -64 249 108 0 0 chr11 108287449 108287486 -40495986 + (TCTG)n Simple_repeat Simple_repeat 4 40 0 2787 154 29 72 chr11 108287486 108287549 -40495923 + MLT2B3 LTR ERVL 490 554 0 964 174 18 6 chr11 108287554 108287721 -40495751 + Tigger4(Zombi) DNA MER2_type 2 170 -2561 3365 126 21 18 chr11 108287725 108288287 -40495185 + Tigger4(Zombi) DNA MER2_type 2168 2731 0 1166 215 15 4 chr11 108289348 108289618 -40493854 - L1PA16 LINE L1 0 6166 5894 249 264 170 0 chr11 108289619 108289725 -40493747 + MER103 DNA DNA 9 132 -34 204 40 0 0 chr11 108290005 108290030 -40493442 + (TTCC)n Simple_repeat Simple_repeat 4 28 0 376 317 56 7 chr11 108290218 108290360 -40493112 + MIR SINE MIR 70 218 -44 229 281 158 0 chr11 108290766 108290848 -40492624 - MIR SINE MIR -88 174 80 263 314 36 15 chr11 108291380 108291517 -40491955 + L1ME4a LINE L1 5969 6108 -13 248 338 192 20 chr11 108292056 108292399 -40491073 + L2 LINE L2 2564 2965 -349 24 0 0 0 chr11 108293093 108293117 -40490355 + AT_rich Low_complexity Low_complexity 1 24 0 208 247 99 111 chr11 108293327 108293489 -40489983 + MIR SINE MIR 31 190 -72 29 60 0 0 chr11 108294645 108294695 -40488777 + AT_rich Low_complexity Low_complexity 1 50 0 2324 86 3 10 chr11 108294748 108295061 -40488411 + AluY SINE Alu 1 311 0 655 229 48 48 chr11 108295162 108295389 -40488083 - MER114 LTR ERV -421 227 1 1324 251 33 11 chr11 108295925 108296291 -40487181 + MLT1A2 LTR MaLR 1 374 0 407 219 125 0 chr11 108296429 108296525 -40486947 - L2 LINE L2 -17 3296 3189 324 341 16 16 chr11 108297424 108297550 -40485922 - MIR3 SINE MIR -81 127 2 365 228 33 22 chr11 108297959 108298051 -40485421 - MIR SINE MIR -115 147 55 22 0 0 0 chr11 108298927 108298949 -40484523 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr11 108299109 108299133 -40484339 + AT_rich Low_complexity Low_complexity 1 24 0 15722 99 34 26 chr11 108299147 108302257 -40481215 - L1PA3 LINE L1 -2 6153 3025 320 273 88 19 chr11 108302597 108302813 -40480659 + L1ME3A LINE L1 4496 4726 -1420 309 257 52 15 chr11 108302995 108303131 -40480341 + L1ME3A LINE L1 4935 5075 -1071 831 159 114 0 chr11 108303383 108303559 -40479913 + L1MA9 LINE L1 5998 6193 -119 428 174 54 0 chr11 108303561 108303653 -40479819 + L1MA9 LINE L1 6216 6312 0 1432 255 97 32 chr11 108303667 108304283 -40479189 + L1ME3A LINE L1 5318 5973 -197 3881 64 19 6 chr11 108305066 108305597 -40477875 - L1PA7 LINE L1 -1 6153 5616 341 264 60 136 chr11 108305864 108306129 -40477343 - MIR SINE MIR 0 262 18 387 0 0 0 chr11 108306968 108307011 -40476461 + (CA)n Simple_repeat Simple_repeat 2 44 0 509 269 199 5 chr11 108307208 108307409 -40476063 + MIR SINE MIR 20 259 -3 27 29 0 0 chr11 108307550 108307584 -40475888 + AT_rich Low_complexity Low_complexity 1 34 0 23 78 0 0 chr11 108308400 108308451 -40475021 + AT_rich Low_complexity Low_complexity 1 51 0 553 264 57 0 chr11 108308985 108309125 -40474347 - MIR SINE MIR -29 233 86 226 303 186 37 chr11 108309892 108310080 -40473392 + MIR SINE MIR 2 217 -45 21 71 0 0 chr11 108310081 108310123 -40473349 + AT_rich Low_complexity Low_complexity 1 42 0 249 269 0 0 chr11 108310479 108310531 -40472941 + L2 LINE L2 3262 3313 0 368 341 111 10 chr11 108310655 108310863 -40472609 + L3 LINE CR1 1338 1566 -11 439 327 77 23 chr11 108310877 108311097 -40472375 - MIR SINE MIR 0 262 31 476 317 36 12 chr11 108311998 108312165 -40471307 - MIR3 SINE MIR -6 202 32 366 366 42 57 chr11 108312555 108312886 -40470586 - L2 LINE L2 0 3313 2988 11118 137 21 41 chr11 108312919 108314890 -40468582 + Tigger1 DNA MER2_type 483 2415 -3 349 380 56 19 chr11 108314979 108315192 -40468280 + L2 LINE L2 2858 3078 -235 218 406 108 8 chr11 108317908 108318157 -40465315 - L2 LINE L2 -469 2845 2572 239 353 24 12 chr11 108319648 108319733 -40463739 - L2 LINE L2 -906 2408 2323 377 196 105 60 chr11 108320402 108320535 -40462937 + MIR SINE MIR 114 252 -10 439 357 52 0 chr11 108320777 108320990 -40462482 + MIR SINE MIR 37 260 -2 2011 125 11 0 chr11 108321165 108321452 -40462020 - AluSq SINE Alu -18 295 6 234 0 0 0 chr11 108321989 108322015 -40461457 + (TG)n Simple_repeat Simple_repeat 2 27 0 311 344 29 70 chr11 108322384 108322628 -40460844 + L2 LINE L2 3016 3249 -23 1697 162 64 22 chr11 108324081 108324439 -40459033 - L1MA3 LINE L1 0 6305 5933 321 234 0 0 chr11 108324614 108324691 -40458781 - MER116 DNA Mariner 0 80 4 912 280 13 7 chr11 108324996 108325300 -40458172 + L1MD2 LINE L1 3440 3745 -2401 * 3379 222 62 29 chr11 108325295 108326882 -40456590 + L1MD2 LINE L1 4680 6338 -21 2800 235 94 35 chr11 108326903 108327344 -40456128 + L1ME1 LINE L1 4384 4797 -1369 1084 216 105 47 chr11 108327344 108327687 -40455785 - MLT1A1 LTR MaLR 0 365 3 2800 235 94 35 chr11 108327687 108328927 -40454545 + L1ME1 LINE L1 4797 6161 -5 240 331 102 20 chr11 108328943 108329235 -40454237 + L2 LINE L2 2746 3058 -214 228 299 41 41 chr11 108329426 108329523 -40453949 - MIR SINE MIR -151 111 15 974 236 169 14 chr11 108329592 108329888 -40453584 + MLT1E2 LTR MaLR 284 625 -1 1909 150 50 8 chr11 108329960 108330320 -40453152 + THE1C LTR MaLR 1 375 0 210 296 86 12 chr11 108330337 108330418 -40453054 + MIR3 SINE MIR 97 183 -25 563 240 187 0 chr11 108330477 108330648 -40452824 + LTR33 LTR ERVL 8 210 -311 1182 225 39 53 chr11 108330724 108331080 -40452392 + MLT1B LTR MaLR 2 352 -38 1751 154 3 51 chr11 108331215 108331527 -40451945 + AluJb SINE Alu 1 297 -15 1339 189 36 3 chr11 108332166 108332468 -40451004 - L1PA16 LINE L1 -1628 4518 4207 5209 180 29 26 chr11 108332470 108333299 -40450173 + L1PA16 LINE L1 4530 5375 -791 1447 179 34 10 chr11 108333299 108333595 -40449877 + AluJb SINE Alu 1 303 -9 5209 180 29 26 chr11 108333595 108334381 -40449091 + L1PA16 LINE L1 5375 6157 -9 26 50 0 0 chr11 108334381 108334421 -40449051 + AT_rich Low_complexity Low_complexity 1 40 0 27 73 0 0 chr11 108337117 108337172 -40446300 + AT_rich Low_complexity Low_complexity 1 55 0 21 36 0 0 chr11 108339126 108339154 -40444318 + AT_rich Low_complexity Low_complexity 1 28 0 387 359 1 14 chr11 108339751 108339911 -40443561 + MIR3 SINE MIR 20 178 -30 23 33 0 0 chr11 108341750 108341780 -40441692 + AT_rich Low_complexity Low_complexity 1 30 0 189 277 139 53 chr11 108342234 108342533 -40440939 - L2 LINE L2 -274 2998 2664 190 171 146 0 chr11 108343482 108343523 -40439949 - L2 LINE L2 -12 3301 3255 259 335 152 12 chr11 108343716 108343880 -40439592 - L3 LINE CR1 -14 1563 1377 396 307 31 61 chr11 108346890 108347118 -40436354 + LTR16A LTR ERVL 16 236 -214 215 163 20 0 chr11 108347652 108347701 -40435771 + (TA)n Simple_repeat Simple_repeat 2 51 0 291 54 0 0 chr11 108348933 108348970 -40434502 + (CA)n Simple_repeat Simple_repeat 1 37 0 24 53 0 0 chr11 108349264 108349302 -40434170 + AT_rich Low_complexity Low_complexity 1 38 0 1424 268 57 11 chr11 108349885 108350352 -40433120 - MLT1H LTR MaLR -18 531 2 592 285 217 8 chr11 108350445 108350708 -40432764 - MLT1H LTR MaLR -5 544 227 718 173 0 0 chr11 108351755 108351882 -40431590 + FLAM_C SINE Alu 13 139 -4 477 315 52 30 chr11 108353766 108354134 -40429338 - L1ME4a LINE L1 -172 5949 5574 459 321 62 6 chr11 108354207 108354369 -40429103 + MIR3 SINE MIR 31 201 -7 22 80 0 0 chr11 108355785 108355835 -40427637 + AT_rich Low_complexity Low_complexity 1 50 0 293 211 32 105 chr11 108355925 108356020 -40427452 - MER87 LTR ERV1 -453 88 1 233 333 22 22 chr11 108356079 108356259 -40427213 - MLT1H1-int LTR MaLR -889 482 303 314 292 29 15 chr11 108356269 108356406 -40427066 - MLT1H1-int LTR MaLR -1227 144 6 540 300 26 16 chr11 108356418 108356608 -40426864 - MLT1H1 LTR MaLR -7 583 392 730 339 47 8 chr11 108356799 108357056 -40426416 - MLT1H1 LTR MaLR -288 267 1 193 304 97 0 chr11 108358572 108358691 -40424781 + MIR3 SINE MIR 37 165 -43 654 276 92 0 chr11 108360132 108360295 -40423177 + MER45A DNA AcHobo 1 178 0 2308 87 0 7 chr11 108361634 108361933 -40421539 + AluY SINE Alu 1 297 -14 225 246 0 53 chr11 108362274 108362331 -40421141 - L2 LINE L2 -9 3304 3251 276 250 58 58 chr11 108362362 108362466 -40421006 - MIR SINE MIR -141 121 18 345 186 0 0 chr11 108363295 108363354 -40420118 - L2 LINE L2 0 3313 3255 345 186 0 0 chr11 108363819 108363878 -40419594 - L2 LINE L2 0 3313 3255 341 149 15 0 chr11 108367633 108367700 -40415772 + CT-rich Low_complexity Low_complexity 1 68 0 345 261 39 52 chr11 108367700 108367853 -40415619 - L1ME3A LINE L1 -1 6169 6019 247 301 39 10 chr11 108370806 108370909 -40412563 - L2 LINE L2 0 3272 3167 593 266 23 34 chr11 108371051 108371228 -40412244 - MER45A DNA AcHobo -2 176 2 208 186 86 43 chr11 108373205 108373275 -40410197 - L2 LINE L2 -5 3308 3236 382 342 96 49 chr11 108373919 108374036 -40409436 - L2 LINE L2 -1017 2297 2187 2065 125 10 0 chr11 108374036 108374339 -40409133 + AluSx SINE Alu 1 306 -6 382 342 96 49 chr11 108374339 108374671 -40408801 - L2 LINE L2 -1127 2187 1827 189 330 28 57 chr11 108374720 108374826 -40408646 + MIR SINE MIR 29 131 -131 243 280 53 0 chr11 108374828 108374903 -40408569 - L2 LINE L2 -4 3268 3190 424 255 31 81 chr11 108375017 108375178 -40408294 - MIR SINE MIR -4 258 106 246 272 11 22 chr11 108375402 108375494 -40407978 + GA-rich Low_complexity Low_complexity 1 91 0 347 115 0 0 chr11 108375911 108375963 -40407509 - L1PA7 LINE L1 -1023 5123 5072 * 5510 64 22 0 chr11 108375961 108376804 -40406668 + L1PA7 LINE L1 5136 5992 -162 1089 203 162 3 chr11 108378327 108378623 -40404849 - MER2 DNA MER2_type 0 344 2 182 245 20 20 chr11 108378679 108378728 -40404744 - L2 LINE L2 -42 3271 3223 357 357 54 8 chr11 108379486 108379615 -40403857 + L2 LINE L2 3133 3267 -5 225 94 0 0 chr11 108380240 108380272 -40403200 + (A)n Simple_repeat Simple_repeat 1 32 0 843 133 27 0 chr11 108380762 108380912 -40402560 + LTR22A LTR ERVK 1 154 -304 2703 115 124 7 chr11 108380912 108381355 -40402117 - HERVK22 LTR ERVK -6342 495 1 2420 88 16 0 chr11 108381355 108381674 -40401798 - LTR22A LTR ERVK 0 458 135 3290 108 2 4 chr11 108381674 108382155 -40401317 - HERVK22 LTR ERVK -5125 1712 1233 636 124 9 0 chr11 108382155 108382260 -40401212 - LTR22A LTR ERVK -352 106 1 2547 62 0 0 chr11 108382354 108382662 -40400810 + AluY SINE Alu 2 309 -2 294 286 83 0 chr11 108383772 108383856 -40399616 + MIR SINE MIR 51 141 -67 228 200 0 0 chr11 108383856 108383906 -40399566 + A-rich Low_complexity Low_complexity 1 50 0 541 226 6 6 chr11 108384051 108384219 -40399253 + GA-rich Low_complexity Low_complexity 3 170 0 21 0 0 0 chr11 108384910 108384931 -40398541 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr11 108385051 108385083 -40398389 + AT_rich Low_complexity Low_complexity 1 32 0 237 340 10 10 chr11 108387112 108387209 -40396263 - MLT1I LTR MaLR -217 192 96 419 270 244 20 chr11 108387648 108388058 -40395414 + L2 LINE L2 2743 3248 -65 2000 121 100 9 chr11 108388060 108388399 -40395073 - MSTA LTR MaLR -58 370 1 27 29 0 0 chr11 108389499 108389533 -40393939 + AT_rich Low_complexity Low_complexity 1 34 0 243 321 25 0 chr11 108389995 108390076 -40393396 - MIR SINE MIR -85 123 41 448 336 78 30 chr11 108390627 108391064 -40392408 - MLT1L LTR MaLR -8 607 131 243 250 0 70 chr11 108391032 108391132 -40392340 - MLT1L LTR MaLR -410 205 113 * 211 310 144 43 chr11 108391400 108391587 -40391885 + MIR SINE MIR 57 262 0 301 295 41 41 chr11 108391831 108391953 -40391519 - MIR SINE MIR -50 212 91 302 347 74 40 chr11 108392028 108392204 -40391268 - MER5A DNA MER1_type -6 183 2 305 301 75 71 chr11 108392492 108392774 -40390698 - L2 LINE L2 -33 3280 2998 28 29 0 0 chr11 108393384 108393419 -40390053 + AT_rich Low_complexity Low_complexity 1 35 0 1765 159 13 10 chr11 108393877 108394185 -40389287 + AluJo SINE Alu 1 309 -3 217 282 127 0 chr11 108394660 108394731 -40388741 + MIR3 SINE MIR 126 205 -3 21 0 0 0 chr11 108395890 108395911 -40387561 + AT_rich Low_complexity Low_complexity 1 21 0 237 290 0 16 chr11 108396016 108396078 -40387394 - L2 LINE L2 -2 3311 3251 364 250 54 48 chr11 108396114 108396282 -40387190 - L1ME LINE L1 -304 5817 5649 22 0 0 0 chr11 108396367 108396389 -40387083 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 108396467 108396488 -40386984 + AT_rich Low_complexity Low_complexity 1 21 0 213 277 46 0 chr11 108396501 108396566 -40386906 + L2 LINE L2 3205 3272 0 376 192 281 20 chr11 108396746 108396892 -40386580 - MLT1G LTR MaLR -6 561 378 6487 136 17 4 chr11 108396902 108398296 -40385176 - L1MA5A LINE L1 -3 6294 4885 807 290 98 33 chr11 108398297 108398632 -40384840 - MLT1G LTR MaLR -193 397 41 191 332 17 13 chr11 108398857 108398940 -40384532 + MIR SINE MIR 27 107 -101 25 0 0 0 chr11 108399007 108399032 -40384440 + AT_rich Low_complexity Low_complexity 1 25 0 288 280 80 32 chr11 108399037 108399162 -40384310 + MIR SINE MIR 105 235 -27 826 257 45 57 chr11 108401761 108402092 -40381380 - L1MD2 LINE L1 -24 6335 6009 31487 112 8 53 chr11 108402121 108408561 -40374911 + L1PA7 LINE L1 12 6154 0 237 132 0 0 chr11 108409668 108409706 -40373766 + (TA)n Simple_repeat Simple_repeat 1 38 0 5888 110 9 5 chr11 108409837 108410694 -40372778 - L1PA8 LINE L1 -8 6164 5304 540 224 0 17 chr11 108411728 108411844 -40371628 + FLAM_C SINE Alu 11 124 -19 601 253 31 92 chr11 108412472 108412701 -40370771 - L2 LINE L2 -2 3311 3097 619 244 152 14 chr11 108412724 108412861 -40370611 - MLT1A2 LTR MaLR 0 378 261 252 0 0 0 chr11 108412861 108412889 -40370583 + (CA)n Simple_repeat Simple_repeat 1 28 0 619 244 152 14 chr11 108412889 108413079 -40370393 - MLT1A2 LTR MaLR -117 261 1 2885 273 93 46 chr11 108413080 108414357 -40369115 - L2 LINE L2 -232 3081 1749 1458 275 227 14 chr11 108414359 108415134 -40368338 - L2 LINE L2 -776 2538 1599 883 315 49 26 chr11 108415193 108415539 -40367933 - L2 LINE L2 -2953 361 8 26 50 0 0 chr11 108416977 108417017 -40366455 + AT_rich Low_complexity Low_complexity 1 40 0 195 276 35 0 chr11 108417789 108417847 -40365625 + L2 LINE L2 3221 3280 -33 236 93 47 0 chr11 108418095 108418138 -40365334 + GA-rich Low_complexity Low_complexity 2 46 0 4735 223 64 28 chr11 108418160 108419364 -40364108 + L1P4 LINE L1 1 1247 -5540 4497 159 1 10 chr11 108419361 108420507 -40362965 + L1P4 LINE L1 5172 6307 -507 * 840 20 0 0 chr11 108420507 108420603 -40362869 + L1PA13 LINE L1 6046 6144 -19 1743 170 40 0 chr11 108421865 108422165 -40361307 + AluSx SINE Alu 1 312 0 2349 119 30 22 chr11 108422632 108422993 -40360479 + THE1B LTR MaLR 1 364 0 507 290 140 31 chr11 108423022 108423308 -40360164 - MLT1L LTR MaLR -130 485 169 251 309 0 15 chr11 108423257 108423325 -40360147 - LTR67 LTR ERVL -390 167 101 * 585 321 49 40 chr11 108423619 108424246 -40359226 - L1MEd LINE L1 -5041 1078 446 548 167 79 9 chr11 108424728 108424766 -40358706 - MSTB2 LTR MaLR 0 457 423 1040 115 40 55 chr11 108424766 108424966 -40358506 + L1PA13 LINE L1 5966 6162 -1 548 167 79 9 chr11 108424966 108425041 -40358431 - MSTB2 LTR MaLR -34 423 336 308 286 68 27 chr11 108426386 108426533 -40356939 + MIR SINE MIR 98 250 -12 216 97 0 0 chr11 108426683 108426714 -40356758 + (TC)n Simple_repeat Simple_repeat 1 31 0 500 184 0 0 chr11 108426714 108426801 -40356671 - FLAM_A SINE Alu -14 128 42 26 50 0 0 chr11 108429729 108429769 -40353703 + AT_rich Low_complexity Low_complexity 1 40 0 207 100 0 0 chr11 108430087 108430117 -40353355 + (A)n Simple_repeat Simple_repeat 1 30 0 20181 160 59 11 chr11 108430224 108437216 -40346256 - L1MA2 LINE L1 0 7723 351 2281 98 0 0 chr11 108437216 108437535 -40345937 + AluSx SINE Alu 1 319 0 20181 160 59 11 chr11 108437535 108437893 -40345579 - L1MA2 LINE L1 -7372 351 12 208 274 0 0 chr11 108438369 108438420 -40345052 + (TA)n Simple_repeat Simple_repeat 2 52 0 481 301 51 31 chr11 108438469 108438665 -40344807 + MIR SINE MIR 47 246 -16 42580 33 23 2 chr11 108439299 108445372 -40338100 + L1PA2 LINE L1 5 6209 0 25 0 0 0 chr11 108445587 108445612 -40337860 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr11 108447099 108447134 -40336338 + AT_rich Low_complexity Low_complexity 1 35 0 289 324 116 8 chr11 108447151 108447301 -40336171 - MIR SINE MIR -76 186 22 22 0 0 0 chr11 108447519 108447541 -40335931 + AT_rich Low_complexity Low_complexity 1 22 0 34 42 0 0 chr11 108448181 108448229 -40335243 + AT_rich Low_complexity Low_complexity 1 48 0 207 194 0 0 chr11 108449461 108449497 -40333975 + (TATG)n Simple_repeat Simple_repeat 3 38 0 21 0 0 0 chr11 108449541 108449562 -40333910 + AT_rich Low_complexity Low_complexity 1 21 0 335 218 51 0 chr11 108451411 108451489 -40331983 - MIR SINE MIR -66 196 115 282 263 0 0 chr11 108452059 108452116 -40331356 - L2 LINE L2 -8 3305 3249 24 0 0 0 chr11 108453102 108453126 -40330346 + AT_rich Low_complexity Low_complexity 1 24 0 373 338 81 6 chr11 108453434 108453594 -40329878 - MIR SINE MIR -71 191 20 218 255 57 85 chr11 108453609 108453715 -40329757 - MIR SINE MIR -55 207 105 464 223 6 139 chr11 108454461 108454627 -40328845 - MIR SINE MIR -117 145 2 346 314 66 7 chr11 108455266 108455403 -40328069 + MIR3 SINE MIR 47 191 -17 783 188 12 44 chr11 108455442 108455602 -40327870 + FRAM SINE Alu 1 152 -24 677 249 110 10 chr11 108458270 108458479 -40324993 + MIR SINE MIR 31 260 -2 233 330 130 0 chr11 108458703 108458803 -40324669 + MIR3 SINE MIR 44 156 -52 226 318 197 22 chr11 108458890 108459113 -40324359 - Charlie8 DNA MER1_type -2152 265 4 1244 113 10 10 chr11 108459392 108459586 -40323886 + MER30 DNA MER1_type 1 194 -36 26 0 0 0 chr11 108461315 108461341 -40322131 + AT_rich Low_complexity Low_complexity 1 26 0 415 245 24 130 chr11 108461368 108461621 -40321851 - MIR SINE MIR -35 227 2 241 263 95 42 chr11 108463155 108463250 -40320222 + L2 LINE L2 3173 3272 0 1095 270 110 26 chr11 108463286 108463705 -40319767 + LTR16A1 LTR ERVL 2 455 -2 196 287 59 40 chr11 108463725 108463826 -40319646 + MER5A DNA MER1_type 83 185 -4 1960 302 107 37 chr11 108464010 108465391 -40318081 - L2 LINE L2 0 3313 1831 188 264 11 110 chr11 108466399 108466490 -40316982 - L2 LINE L2 -78 3235 3154 1733 299 75 57 chr11 108466605 108467517 -40315955 - L2 LINE L2 -493 2821 1894 358 295 107 8 chr11 108468458 108468580 -40314892 - L2 LINE L2 -2 3311 3178 368 286 126 25 chr11 108469827 108469946 -40313526 - L2 LINE L2 0 3272 3142 2526 65 0 0 chr11 108471506 108471814 -40311658 + AluY SINE Alu 1 308 -3 534 232 26 74 chr11 108472496 108472686 -40310786 - L1ME3A LINE L1 -27 6143 5963 2318 113 0 0 chr11 108472692 108473002 -40310470 - AluSx SINE Alu -2 310 1 9298 160 37 15 chr11 108473017 108475633 -40307839 - L1MA8 LINE L1 -13 6278 3608 682 238 91 30 chr11 108475634 108475779 -40307693 - L1ME3A LINE L1 -192 5978 5843 2524 51 0 0 chr11 108475779 108476072 -40307400 - AluY SINE Alu -18 293 1 682 238 91 30 chr11 108476072 108476191 -40307281 - L1ME3A LINE L1 -327 5843 5698 339 196 184 24 chr11 108476185 108476353 -40307119 - L1ME3A LINE L1 -1567 4579 4385 * 396 291 40 5 chr11 108476401 108476600 -40306872 - L1MC5 LINE L1 -49 7912 7707 249 317 98 23 chr11 108476761 108477059 -40306413 - L1ME LINE L1 -5636 434 111 227 286 79 36 chr11 108477120 108477449 -40306023 - L1ME3A LINE L1 -2805 3341 2999 2512 124 38 22 chr11 108477607 108478059 -40305413 - LTR56 LTR ERV1 0 439 5 22 0 0 0 chr11 108478220 108478242 -40305230 + AT_rich Low_complexity Low_complexity 1 22 0 354 354 65 9 chr11 108479932 108480161 -40303311 + L2 LINE L2 2428 2669 -645 444 309 122 42 chr11 108480220 108480687 -40302785 - L2 LINE L2 -131 3182 2677 357 289 91 104 chr11 108480824 108481295 -40302177 + L2 LINE L2 2804 3268 -4 1537 162 3 63 chr11 108481619 108481922 -40301550 + AluJo SINE Alu 1 285 -27 2011 141 131 8 chr11 108481929 108482304 -40301168 - MSTA LTR MaLR -7 421 1 180 111 0 0 chr11 108482312 108482339 -40301133 + (A)n Simple_repeat Simple_repeat 1 27 0 1101 161 5 0 chr11 108482342 108482535 -40300937 + L1PBa LINE L1 2 195 -6668 12710 198 70 9 chr11 108482540 108487059 -40296413 + L1PBa LINE L1 636 5431 -1431 32956 66 10 6 chr11 108487339 108488017 -40295455 - L1PA11 LINE L1 0 6174 5500 1912 148 0 13 chr11 108488017 108488315 -40295157 - AluSx SINE Alu -2 310 17 32956 66 10 6 chr11 108488315 108492768 -40290704 - L1PA11 LINE L1 -674 5500 1027 5981 156 19 16 chr11 108492906 108494677 -40288795 + L1PB1 LINE L1 4381 6151 0 854 187 6 18 chr11 108494739 108494910 -40288562 + L1MC1 LINE L1 6148 6316 -17 2158 118 14 0 chr11 108495230 108495519 -40287953 + AluSx SINE Alu 1 293 -19 28 0 0 0 chr11 108495613 108495641 -40287831 + AT_rich Low_complexity Low_complexity 1 28 0 186 395 60 0 chr11 108495783 108495917 -40287555 - MIR SINE MIR -87 175 34 250 281 8 33 chr11 108496030 108496151 -40287321 + L1ME LINE L1 5688 5805 -316 905 226 71 68 chr11 108498306 108498629 -40284843 - LTR28 LTR ERV1 0 1020 697 403 235 333 0 chr11 108498627 108498759 -40284713 - LTR28 LTR ERV1 -142 878 703 * 2217 198 314 7 chr11 108498763 108499435 -40284037 - LTR28 LTR ERV1 -142 878 1 43 20 0 0 chr11 108501640 108501690 -40281782 + AT_rich Low_complexity Low_complexity 1 50 0 291 28 0 0 chr11 108501888 108501924 -40281548 + (CA)n Simple_repeat Simple_repeat 1 36 0 226 286 98 53 chr11 108502311 108502444 -40281028 + L2 LINE L2 3056 3194 -78 1696 184 29 0 chr11 108504181 108504528 -40278944 + L1MA4 LINE L1 5939 6295 -5 1182 187 46 110 chr11 108504817 108505207 -40278265 - MLT1A1 LTR MaLR 0 365 1 25 65 0 0 chr11 108505894 108505940 -40277532 + AT_rich Low_complexity Low_complexity 1 46 0 2375 120 28 14 chr11 108506508 108506866 -40276606 - THE1B LTR MaLR -1 363 1 275 238 12 25 chr11 108507146 108507226 -40276246 + L1MC5 LINE L1 7835 7913 -48 379 353 17 63 chr11 108508498 108508736 -40274736 + L2 LINE L2 3032 3258 -14 263 283 27 0 chr11 108509783 108509866 -40273606 + MIR SINE MIR 66 140 -68 23 0 0 0 chr11 108510012 108510035 -40273437 + AT_rich Low_complexity Low_complexity 1 23 0 229 333 126 30 chr11 108510172 108510442 -40273030 + L2 LINE L2 2804 3099 -173 184 329 79 26 chr11 108510490 108510566 -40272906 + L2 LINE L2 3180 3259 -13 557 301 118 18 chr11 108511250 108511479 -40271993 - MIR SINE MIR 0 262 11 180 77 0 0 chr11 108511564 108511590 -40271882 + (A)n Simple_repeat Simple_repeat 1 26 0 288 283 223 28 chr11 108511668 108511919 -40271553 + L3 LINE CR1 511 810 -767 1707 62 17 25 chr11 108511920 108512161 -40271311 - L1PA13 LINE L1 -4 6159 5921 888 230 118 34 chr11 108512192 108512514 -40270958 + L1MC4 LINE L1 7692 8040 -2 207 340 202 5 chr11 108512521 108512709 -40270763 + L3 LINE CR1 850 1074 -503 298 269 135 10 chr11 108513212 108513316 -40270156 - MIR SINE MIR -76 132 16 555 314 26 16 chr11 108513964 108514158 -40269314 + MIR SINE MIR 66 261 -1 5690 156 84 6 chr11 108514511 108515652 -40267820 - Tigger3b DNA MER2_type -1 1230 1 22 0 0 0 chr11 108515719 108515741 -40267731 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr11 108516851 108516879 -40266593 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr11 108517569 108517593 -40265879 + AT_rich Low_complexity Low_complexity 1 24 0 229 286 0 0 chr11 108519300 108519349 -40264123 + L2 LINE L2 3205 3253 -19 383 293 90 0 chr11 108519484 108519617 -40263855 + L1MC4a LINE L1 5543 5687 -2121 335 245 180 59 chr11 108519618 108519941 -40263531 + L1MC4a LINE L1 5868 6229 -1579 14843 199 46 29 chr11 108519984 108521720 -40261752 - L1PA16 LINE L1 -5 6864 5158 318 50 0 0 chr11 108521720 108521760 -40261712 + (TG)n Simple_repeat Simple_repeat 2 41 0 14843 199 46 29 chr11 108521760 108522031 -40261441 - L1PA16 LINE L1 -1711 5158 4893 466 27 122 40 chr11 108522031 108522105 -40261367 + MADE1 DNA Mariner 1 80 0 14843 199 46 29 chr11 108522105 108523522 -40259950 - L1PA16 LINE L1 -1976 4893 3501 2415 75 0 0 chr11 108523522 108523816 -40259656 + AluSg SINE Alu 1 294 -16 14843 199 46 29 chr11 108523816 108527118 -40256354 - L1PA16 LINE L1 -3368 3501 1 25 51 0 0 chr11 108527309 108527348 -40256124 + AT_rich Low_complexity Low_complexity 1 39 0 703 285 41 20 chr11 108527415 108527661 -40255811 + L1MC4a LINE L1 6559 6809 -999 1315 208 28 35 chr11 108527944 108528262 -40255210 - MER7A DNA MER2_type -2 344 31 238 241 214 0 chr11 108528306 108528418 -40255054 + L1MC4 LINE L1 7120 7255 -787 229 348 37 19 chr11 108528423 108528584 -40254888 + L1MC4a LINE L1 7252 7415 -393 536 282 77 40 chr11 108528600 108529156 -40254316 + L1MC5 LINE L1 7349 7925 -36 1496 179 25 44 chr11 108529161 108529479 -40253993 + AluJo SINE Alu 1 312 0 2166 118 0 0 chr11 108530214 108530510 -40252962 - AluSx SINE Alu -16 296 1 561 259 61 7 chr11 108530582 108530729 -40252743 + MLT1J1 LTR MaLR 1 155 -291 26 0 0 0 chr11 108530857 108530883 -40252589 + AT_rich Low_complexity Low_complexity 1 26 0 269 221 149 11 chr11 108531595 108531704 -40251768 + L1MD3 LINE L1 6771 6942 -920 464 268 147 52 chr11 108531817 108532402 -40251070 + L1MC5 LINE L1 7261 7803 -158 317 306 0 0 chr11 108532468 108532576 -40250896 + L1MC5 LINE L1 7806 7913 -48 1940 151 24 50 chr11 108532853 108533269 -40250203 - L1MA4 LINE L1 -8 6292 5888 22 88 0 0 chr11 108533272 108533329 -40250143 + AT_rich Low_complexity Low_complexity 1 57 0 543 360 142 35 chr11 108533420 108534193 -40249279 + L2 LINE L2 1987 2842 -472 341 334 99 74 chr11 108534223 108534546 -40248926 + L2 LINE L2 2942 3272 0 767 307 93 30 chr11 108535433 108535970 -40247502 - L2 LINE L2 -27 3286 2713 336 316 89 18 chr11 108536393 108536561 -40246911 + L2 LINE L2 1726 1905 -1409 237 266 14 7 chr11 108536868 108537007 -40246465 + GA-rich Low_complexity Low_complexity 1 140 0 380 321 69 31 chr11 108538164 108538323 -40245149 - L2 LINE L2 -585 2729 2565 5068 155 27 7 chr11 108538331 108540088 -40243384 + L1MA8 LINE L1 4496 6289 -2 1132 311 38 36 chr11 108540107 108540606 -40242866 - L2 LINE L2 -755 2559 2060 502 240 0 25 chr11 108540622 108540743 -40242729 + FLAM_A SINE Alu 11 128 -14 2336 106 0 0 chr11 108542214 108542517 -40240955 - AluSg SINE Alu -7 303 1 355 218 127 66 chr11 108542562 108542759 -40240713 - MER3 DNA MER1_type 0 209 1 4858 284 52 29 chr11 108543367 108545082 -40238390 + L1PA11 LINE L1 94 2429 -5155 216 0 0 0 chr11 108545082 108545106 -40238366 + (CA)n Simple_repeat Simple_repeat 2 25 0 4858 284 52 29 chr11 108545106 108546039 -40237433 + L1PA11 LINE L1 2429 3339 -4245 4329 169 29 0 chr11 108546034 108546868 -40236604 + L1PA11 LINE L1 3571 4428 -3156 * 1693 195 13 32 chr11 108546870 108547106 -40236366 - THE1C LTR MaLR -2 373 145 2270 128 31 17 chr11 108547106 108547465 -40236007 + THE1B LTR MaLR 1 364 0 1693 195 13 32 chr11 108547465 108547607 -40235865 - THE1C LTR MaLR -230 145 2 12531 164 39 29 chr11 108547607 108547752 -40235720 + L1PA11 LINE L1 4423 4565 -3047 2246 119 7 0 chr11 108547752 108548055 -40235417 + AluSq SINE Alu 1 305 -8 12531 164 39 29 chr11 108548055 108550407 -40233065 + L1PA11 LINE L1 4565 6942 -670 1941 148 0 13 chr11 108550407 108550705 -40232767 + AluSx SINE Alu 17 310 -2 12531 164 39 29 chr11 108550705 108551383 -40232089 + L1PA11 LINE L1 6942 7612 0 873 251 53 4 chr11 108552134 108552377 -40231095 - MLT1I LTR MaLR -3 406 152 371 308 25 0 chr11 108552921 108553041 -40230431 - MIR SINE MIR -51 211 89 1583 180 57 20 chr11 108553236 108553536 -40229936 + AluJb SINE Alu 1 311 -1 189 353 59 0 chr11 108553672 108553740 -40229732 + L2 LINE L2 3158 3229 -43 311 299 165 12 chr11 108553879 108554043 -40229429 + MIR3 SINE MIR 13 201 -7 256 302 21 31 chr11 108554490 108554586 -40228886 - L2 LINE L2 0 3313 3219 331 335 26 7 chr11 108554921 108555073 -40228399 + MER115 DNA AcHobo 1 155 -538 514 320 27 45 chr11 108555122 108555344 -40228128 + MER115 DNA AcHobo 149 366 -327 677 170 14 0 chr11 108558153 108558294 -40225178 - L1MA4 LINE L1 -5 6295 6153 208 382 45 0 chr11 108558404 108558493 -40224979 - MIR SINE MIR -150 112 20 23 0 0 0 chr11 108558578 108558601 -40224871 + AT_rich Low_complexity Low_complexity 1 23 0 293 288 59 25 chr11 108558886 108559004 -40224468 + L2 LINE L2 3192 3313 0 284 258 31 21 chr11 108559136 108559233 -40224239 - MIR SINE MIR -2 260 163 183 369 31 0 chr11 108559319 108559384 -40224088 + L2 LINE L2 3187 3253 -19 410 254 104 0 chr11 108560479 108560652 -40222820 - L1MA9 LINE L1 -53 6259 6069 * 3000 178 36 6 chr11 108560649 108561764 -40221708 - L1MA9 LINE L1 -519 5793 4643 219 402 60 0 chr11 108561853 108561970 -40221502 + L2 LINE L2 3185 3308 -5 225 244 0 0 chr11 108561984 108562025 -40221447 + polypurine Low_complexity Low_complexity 3 43 0 646 235 17 17 chr11 108562835 108563014 -40220458 - MER33 DNA MER1_type -127 197 19 1218 228 74 7 chr11 108563196 108563630 -40219842 + MER89 LTR ERV1 2 559 0 332 332 109 24 chr11 108563721 108563932 -40219540 - L2 LINE L2 0 3313 3085 314 313 62 29 chr11 108564288 108564560 -40218912 + HAL1 LINE L1 1779 2059 -448 266 141 35 71 chr11 108564574 108564659 -40218813 + HAL1 LINE L1 2108 2189 -318 295 360 54 39 chr11 108564950 108565153 -40218319 - L2 LINE L2 -511 2803 2598 1721 211 72 100 chr11 108565256 108566028 -40217444 - LTR1B LTR ERV1 -75 751 1 746 289 36 22 chr11 108566325 108566550 -40216922 - MIR SINE MIR -24 238 11 190 208 0 21 chr11 108566666 108566714 -40216758 + MIR SINE MIR 113 159 -103 1875 174 12 59 chr11 108566815 108567224 -40216248 + MLT1B LTR MaLR 1 390 0 529 278 28 6 chr11 108567820 108567996 -40215476 - LTR41 LTR ERVL -592 181 2 5779 149 9 0 chr11 108568325 108569297 -40214175 - Tigger1 DNA MER2_type -53 2365 1385 40242 38 23 3 chr11 108569300 108575327 -40208145 + L1PA2 LINE L1 1 6150 -5 6189 153 85 33 chr11 108575344 108576660 -40206812 - Tigger1 DNA MER2_type -1034 1384 1 31 26 0 0 chr11 108576692 108576730 -40206742 + AT_rich Low_complexity Low_complexity 1 38 0 2009 200 45 7 chr11 108576927 108577367 -40206105 - MLT1C LTR MaLR -8 459 3 339 267 69 89 chr11 108577708 108577910 -40205562 - MLT1K LTR MaLR -3 585 388 740 262 43 0 chr11 108577918 108578105 -40205367 - MER20 DNA MER1_type -1 218 24 32 57 0 0 chr11 108578247 108578300 -40205172 + AT_rich Low_complexity Low_complexity 1 53 0 348 258 35 86 chr11 108578541 108578739 -40204733 - MLT1J LTR MaLR -321 190 3 221 367 20 20 chr11 108578881 108578979 -40204493 - MIR SINE MIR -64 144 47 207 273 0 0 chr11 108579329 108579373 -40204099 - L2 LINE L2 -92 3180 3137 458 320 48 20 chr11 108579794 108580044 -40203428 + MIR SINE MIR 2 258 -4 441 273 219 48 chr11 108580267 108580619 -40202853 - L2 LINE L2 0 3313 2902 6288 165 86 39 chr11 108580623 108582430 -40201042 + L1MCa LINE L1 4 1991 -4435 869 196 33 0 chr11 108582452 108582636 -40200836 + L1PBa LINE L1 11 200 -6663 9510 127 51 4 chr11 108582636 108584943 -40198529 + L1PBa LINE L1 634 3122 -3740 313 185 0 0 chr11 108584942 108584996 -40198476 + L1 LINE L1 2182 2235 -4192 * 12219 61 10 1 chr11 108584998 108587364 -40196108 + L1PA8 LINE L1 3766 6150 -22 424 211 137 0 chr11 108587374 108587469 -40196003 + Tigger2 DNA MER2_type 2611 2718 0 303 260 46 9 chr11 108587471 108587604 -40195868 + L1 LINE L1 2618 2752 -3674 5166 144 35 38 chr11 108587604 108588619 -40194853 + L1MC1 LINE L1 5317 6328 -5 301 326 58 26 chr11 108589270 108589460 -40194012 + L2 LINE L2 2219 2414 -900 724 229 47 32 chr11 108590144 108590423 -40193049 + L1ME4a LINE L1 5619 5901 -220 4271 28 5 6 chr11 108590571 108591422 -40192050 - L1PA4 LINE L1 -478 5676 4827 3803 27 0 4 chr11 108591382 108591863 -40191609 + L1PA4 LINE L1 5677 6155 0 * 27 0 0 0 chr11 108591865 108591892 -40191580 + AT_rich Low_complexity Low_complexity 1 27 0 848 334 65 33 chr11 108592496 108593154 -40190318 - HERV16 LTR ERVL -3822 1174 496 2462 152 36 13 chr11 108593281 108593728 -40189744 + LTR32 LTR ERVL 15 471 0 671 217 81 60 chr11 108593799 108594082 -40189390 + MLT1C LTR MaLR 18 306 -161 536 235 65 26 chr11 108594554 108594707 -40188765 + MLT1C LTR MaLR 309 467 0 707 91 0 0 chr11 108595245 108595344 -40188128 + LTR18B LTR ERVL 85 183 -431 1224 108 76 143 chr11 108595353 108595667 -40187805 + LTR18B LTR ERVL 322 614 0 357 352 49 12 chr11 108596463 108596625 -40186847 - L2 LINE L2 0 3272 3105 223 164 33 16 chr11 108597872 108597933 -40185539 + GA-rich Low_complexity Low_complexity 4 65 0 32 0 0 0 chr11 108598140 108598172 -40185300 + AT_rich Low_complexity Low_complexity 1 32 0 428 260 106 0 chr11 108598289 108598412 -40185060 - MIR SINE MIR -30 232 97 281 254 8 42 chr11 108598882 108599000 -40184472 - MER46C DNA MER2_type -177 161 48 978 239 89 106 chr11 108599404 108599943 -40183529 - MLT1F LTR MaLR 0 542 13 231 405 0 0 chr11 108600878 108600957 -40182515 - L2 LINE L2 -86 3186 3108 4994 161 50 13 chr11 108601259 108602346 -40181126 + L1MC2 LINE L1 5215 6341 -3 1077 290 22 27 chr11 108602525 108602932 -40180540 - MLT1H1 LTR MaLR -150 405 1 188 281 31 16 chr11 108602943 108603007 -40180465 - L2 LINE L2 -531 2783 2719 225 254 34 0 chr11 108603217 108603276 -40180196 + L2 LINE L2 3165 3225 -88 2159 103 0 3 chr11 108603371 108603662 -40179810 + AluY SINE Alu 1 290 -21 380 353 59 11 chr11 108603795 108603982 -40179490 - MIR SINE MIR -64 198 3 331 286 167 8 chr11 108604072 108604219 -40179253 + MER5B DNA MER1_type 7 167 -11 222 375 29 0 chr11 108605377 108605481 -40177991 - MIR3 SINE MIR -3 205 99 1660 288 24 16 chr11 108606587 108607098 -40176374 + L2 LINE L2 163 677 -2637 622 293 84 22 chr11 108607292 108607565 -40175907 + L2 LINE L2 3015 3304 -9 39 0 0 0 chr11 108608715 108608754 -40174718 + AT_rich Low_complexity Low_complexity 1 39 0 731 156 52 22 chr11 108608777 108608912 -40174560 + FRAM SINE Alu 20 158 -18 243 250 75 0 chr11 108609047 108609127 -40174345 - MLT1L LTR MaLR -386 229 144 607 316 54 27 chr11 108609140 108609437 -40174035 + L2 LINE L2 2056 2360 -954 1430 86 0 0 chr11 108609439 108609636 -40173836 - L1P3 LINE L1 -526 5628 5432 23 0 0 0 chr11 108609748 108609771 -40173701 + GC_rich Low_complexity Low_complexity 1 23 0 234 0 0 0 chr11 108609792 108609818 -40173654 + (A)n Simple_repeat Simple_repeat 1 26 0 390 283 25 8 chr11 108609830 108609950 -40173522 - L2 LINE L2 0 3313 3192 2026 115 0 13 chr11 108610573 108610878 -40172594 - AluY SINE Alu -10 301 1 311 294 59 22 chr11 108611061 108611197 -40172275 - L2 LINE L2 -5 3308 3168 427 318 92 15 chr11 108611253 108611590 -40171882 + L1ME4a LINE L1 5497 5859 -262 1576 224 3 12 chr11 108612141 108612485 -40170987 + MER58B DNA MER1_type 1 341 0 541 219 80 13 chr11 108613331 108613482 -40169990 + MLT1B LTR MaLR 1 161 -213 399 83 0 0 chr11 108613487 108613547 -40169925 + (TC)n Simple_repeat Simple_repeat 1 60 0 910 220 25 0 chr11 108613550 108613750 -40169722 + MLT1B LTR MaLR 182 386 -4 3760 219 53 87 chr11 108613758 108615158 -40168314 + MLT1A2-int LTR MaLR 5 1356 -15 1617 203 23 20 chr11 108615171 108615521 -40167951 + MLT1A2 LTR MaLR 1 351 -23 250 343 20 14 chr11 108615534 108615680 -40167792 - MLT1L LTR MaLR -48 567 421 761 260 40 18 chr11 108617385 108617608 -40165864 + MIR SINE MIR 14 241 -21 1407 239 122 16 chr11 108617775 108618305 -40165167 - L2 LINE L2 -5 3308 2735 35503 41 30 2 chr11 108618305 108622953 -40160519 + L1PA3 LINE L1 1 4777 -1369 344 0 0 0 chr11 108623065 108623107 -40160365 - L1PA3 LINE L1 -5 6150 6109 5673 17 1 0 chr11 108623110 108623801 -40159671 + L1PA3 LINE L1 5254 5945 -210 5376 182 21 27 chr11 108623795 108624819 -40158653 - L1P LINE L1 -747 5399 4382 * 186 336 154 45 chr11 108624887 108625107 -40158365 + L2 LINE L2 2589 2832 -482 392 316 11 0 chr11 108625110 108625205 -40158267 - MER91A DNA MER1_type 0 196 101 407 307 127 58 chr11 108625236 108625598 -40157874 + L2 LINE L2 2878 3264 -8 979 160 0 0 chr11 108625607 108625757 -40157715 + AluJo SINE Alu 1 150 -162 444 257 37 37 chr11 108626581 108626717 -40156755 - L2 LINE L2 -1 3271 3136 2428 77 0 0 chr11 108626965 108627263 -40156209 + AluY SINE Alu 1 298 -13 980 87 60 13 chr11 108627736 108627886 -40155586 + L1PA11 LINE L1 6018 6174 0 291 221 53 53 chr11 108627944 108628039 -40155433 + MIR3 SINE MIR 60 154 -54 506 264 18 6 chr11 108629832 108629999 -40153473 + LTR16A1 LTR ERVL 285 453 -4 319 287 36 92 chr11 108630900 108631203 -40152269 + L2 LINE L2 3028 3313 0 233 208 0 0 chr11 108632147 108632195 -40151277 - MIR SINE MIR -54 208 161 342 281 25 16 chr11 108632201 108632322 -40151150 - LTR67 LTR ERVL -8 549 428 329 285 53 33 chr11 108632476 108632627 -40150845 + L2 LINE L2 3125 3278 -35 430 280 186 5 chr11 108632628 108632787 -40150685 - MIR SINE MIR -57 151 5 303 211 46 73 chr11 108632968 108633077 -40150395 - MIR SINE MIR -79 183 78 1388 225 123 10 chr11 108633084 108633498 -40149974 + MLT1C LTR MaLR 6 466 -1 190 311 0 0 chr11 108633507 108633568 -40149904 - MIR SINE MIR -145 117 57 1415 138 13 0 chr11 108633690 108633915 -40149557 - L1PA15 LINE L1 -6 6159 5932 5519 6 6 3 chr11 108634089 108634717 -40148755 - L1PA2 LINE L1 0 6155 5526 234 328 174 31 chr11 108634932 108635127 -40148345 + L2 LINE L2 3049 3271 -1 524 348 109 36 chr11 108637007 108637675 -40145797 - L2 LINE L2 0 3272 2551 526 187 28 0 chr11 108638050 108638157 -40145315 - MLT1F1 LTR MaLR -103 464 355 21 0 0 0 chr11 108639732 108639753 -40143719 + AT_rich Low_complexity Low_complexity 1 21 0 768 168 32 0 chr11 108639794 108639919 -40143553 - FLAM_C SINE Alu -3 130 2 491 252 14 28 chr11 108640010 108640153 -40143319 - L2 LINE L2 -1 3312 3172 288 208 97 0 chr11 108640155 108640227 -40143245 + MIR SINE MIR 181 259 -3 21 0 0 0 chr11 108640954 108640975 -40142497 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr11 108641137 108641166 -40142306 + AT_rich Low_complexity Low_complexity 1 29 0 331 176 107 23 chr11 108641545 108641676 -40141796 + MER113 DNA MER1_type? 7 148 -373 295 230 40 14 chr11 108641763 108641837 -40141635 + L3 LINE CR1 1432 1507 -70 297 220 0 0 chr11 108642509 108642568 -40140904 - MER113 DNA MER1_type? 0 521 463 317 198 87 16 chr11 108642671 108642797 -40140675 - MER113 DNA MER1_type? -375 146 12 28 0 0 0 chr11 108643415 108643443 -40140029 + AT_rich Low_complexity Low_complexity 1 28 0 980 107 54 63 chr11 108643648 108643853 -40139619 - L1MA9 LINE L1 0 6312 6110 1717 165 71 6 chr11 108643858 108644180 -40139292 + MER7A DNA MER2_type 6 346 0 384 110 68 0 chr11 108644185 108644258 -40139214 - L1MA9 LINE L1 -214 6098 6021 1090 160 3 118 chr11 108644290 108644577 -40138895 - L1MA9 LINE L1 -755 5557 5304 1934 160 0 16 chr11 108644582 108644889 -40138583 - AluJo SINE Alu -10 302 1 1018 177 37 35 chr11 108645138 108645461 -40138011 - MLT1A1 LTR MaLR 0 365 9 1867 147 10 16 chr11 108645549 108645863 -40137609 + AluJo SINE Alu 1 312 0 186 294 59 24 chr11 108647180 108647265 -40136207 - MIR SINE MIR -52 210 123 22 0 0 0 chr11 108648644 108648666 -40134806 + AT_rich Low_complexity Low_complexity 1 22 0 348 288 56 81 chr11 108648812 108648972 -40134500 + MIR3 SINE MIR 5 158 -50 228 270 234 0 chr11 108648989 108649100 -40134372 + MER5A DNA MER1_type 44 180 -9 239 204 0 20 chr11 108649580 108649629 -40133843 + MER34 LTR ERV1 1 48 -494 2698 302 25 19 chr11 108649631 108649893 -40133579 + LTR51 LTR ERV1 2 261 -410 2138 120 7 0 chr11 108649893 108650192 -40133280 - AluSg SINE Alu -9 301 1 2698 302 25 19 chr11 108650192 108650595 -40132877 + LTR51 LTR ERV1 261 671 0 261 194 15 45 chr11 108650623 108650690 -40132782 + MER34 LTR ERV1 51 115 -427 * 493 213 62 104 chr11 108650667 108650781 -40132691 + LTR48B LTR ERV1 134 234 -410 2377 66 0 10 chr11 108650781 108651082 -40132390 + AluY SINE Alu 1 298 -13 493 213 62 104 chr11 108651082 108651207 -40132265 + LTR48B LTR ERV1 234 363 -281 2375 88 0 0 chr11 108651207 108651513 -40131959 + AluY SINE Alu 1 306 -5 207 0 0 0 chr11 108652032 108652055 -40131417 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 279 316 42 0 chr11 108652466 108652561 -40130911 - MIR3 SINE MIR -34 174 76 524 263 9 0 chr11 108652734 108652848 -40130624 + MLT1E LTR MaLR 51 165 -428 1951 163 0 0 chr11 108652949 108653238 -40130234 - AluSx SINE Alu -23 289 1 332 296 25 0 chr11 108654026 108654107 -40129365 - MIR3 SINE MIR -6 202 120 226 274 82 104 chr11 108654033 108654168 -40129304 - L3b LINE CR1 -11 1572 1441 * 698 186 41 90 chr11 108654401 108654565 -40128907 - LTR37B LTR ERV1 0 468 322 1948 119 12 80 chr11 108654565 108654892 -40128580 + AluSx SINE Alu 1 305 -7 698 186 41 90 chr11 108654892 108655017 -40128455 - LTR37B LTR ERV1 -146 322 193 808 191 115 21 chr11 108659561 108659796 -40123676 - MER39 LTR ERV1 0 707 451 565 200 31 23 chr11 108659901 108660031 -40123441 - MER39 LTR ERV1 -237 470 340 1920 155 75 39 chr11 108660052 108660491 -40122981 - MSTB2 LTR MaLR -2 455 1 22 35 0 0 chr11 108662158 108662187 -40121285 + AT_rich Low_complexity Low_complexity 1 29 0 342 155 42 0 chr11 108662503 108662574 -40120898 - L1MC2 LINE L1 -9 6335 6262 2072 173 86 0 chr11 108662621 108663042 -40120430 + L1MB7 LINE L1 5650 6106 -78 2340 65 3 0 chr11 108663056 108663347 -40120125 + AluY SINE Alu 13 304 -7 22 0 0 0 chr11 108663936 108663958 -40119514 + AT_rich Low_complexity Low_complexity 1 22 0 3610 154 8 8 chr11 108664941 108665552 -40117920 - L1PA16 LINE L1 -4 6162 5552 259 311 15 0 chr11 108667604 108667739 -40115733 + L1ME LINE L1 5762 5898 -223 1826 181 0 16 chr11 108668022 108668337 -40115135 + AluJb SINE Alu 1 310 -2 391 257 131 69 chr11 108668734 108668819 -40114653 - MER5A DNA MER1_type 0 189 111 2145 133 0 3 chr11 108668819 108669128 -40114344 + AluSx SINE Alu 1 308 -4 391 257 131 69 chr11 108669128 108669217 -40114255 - MER5A DNA MER1_type -78 111 4 26 0 0 0 chr11 108669386 108669412 -40114060 + AT_rich Low_complexity Low_complexity 1 26 0 362 333 0 0 chr11 108669620 108669719 -40113753 + MIR SINE MIR 37 135 -73 195 42 0 0 chr11 108670075 108670099 -40113373 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 2446 106 0 0 chr11 108670099 108670410 -40113062 + AluSx SINE Alu 1 311 -1 654 252 142 14 chr11 108670591 108670809 -40112663 - MIR SINE MIR 0 262 17 24 53 0 0 chr11 108671422 108671460 -40112012 + AT_rich Low_complexity Low_complexity 1 38 0 189 268 0 0 chr11 108671736 108671777 -40111695 - L2 LINE L2 -12 3301 3261 214 238 271 41 chr11 108672728 108672850 -40110622 - L2 LINE L2 -6 3307 3158 439 359 31 0 chr11 108673014 108673206 -40110266 + MIR SINE MIR 49 246 -16 533 131 9 0 chr11 108673439 108673546 -40109926 + (TC)n Simple_repeat Simple_repeat 1 108 0 232 127 16 111 chr11 108675103 108675142 -40108330 - MLT2B2 LTR ERVL 0 520 488 606 14 0 0 chr11 108675142 108675213 -40108259 + (TAGA)n Simple_repeat Simple_repeat 2 72 0 232 127 16 111 chr11 108675213 108675236 -40108236 - MLT2B2 LTR ERVL -32 488 464 189 74 0 0 chr11 108675253 108675280 -40108192 + (TA)n Simple_repeat Simple_repeat 2 28 0 2094 172 91 27 chr11 108675285 108675726 -40107746 - MLT2B2 LTR ERVL -46 469 1 444 37 0 0 chr11 108676185 108676239 -40107233 + (TG)n Simple_repeat Simple_repeat 1 54 0 580 343 70 36 chr11 108678130 108678714 -40104758 + L2 LINE L2 1537 2140 -1174 591 343 171 27 chr11 108680922 108681710 -40101762 + L2 LINE L2 2125 3050 -222 220 147 0 0 chr11 108682512 108682546 -40100926 + L2 LINE L2 3239 3272 0 2675 175 60 15 chr11 108683522 108684031 -40099441 - MLT1F1 LTR MaLR -7 560 24 1707 130 4 15 chr11 108684031 108684293 -40099179 - AluY SINE Alu -14 297 39 2675 175 60 15 chr11 108684293 108684319 -40099153 - MLT1F1 LTR MaLR -543 24 1 273 231 14 27 chr11 108684913 108685060 -40098412 + GA-rich Low_complexity Low_complexity 2 146 0 298 171 13 13 chr11 108685100 108685176 -40098296 + A-rich Low_complexity Low_complexity 3 78 0 478 269 58 0 chr11 108685763 108685934 -40097538 + L1MC4 LINE L1 6448 6628 -1414 585 92 0 0 chr11 108685962 108686038 -40097434 + AluS SINE Alu 1 76 -237 6041 51 1 0 chr11 108686038 108686828 -40096644 - L1P LINE L1 -1414 4732 3942 * 7204 158 7 7 chr11 108686824 108688203 -40095269 - L1P LINE L1 -2522 3624 2246 365 200 180 0 chr11 108688205 108688305 -40095167 + MLT1A1 LTR MaLR 248 365 0 1644 252 85 9 chr11 108688312 108688852 -40094620 + L1MC4 LINE L1 7316 7896 -146 499 346 74 40 chr11 108689053 108689498 -40093974 - L2 LINE L2 0 3272 2813 542 306 48 48 chr11 108690585 108690837 -40092635 - MIR SINE MIR 0 262 11 334 314 129 110 chr11 108690948 108691321 -40092151 - L2 LINE L2 -21 3251 2872 261 0 0 0 chr11 108691383 108691412 -40092060 + (TG)n Simple_repeat Simple_repeat 2 30 0 1637 144 0 4 chr11 108691702 108691931 -40091541 - AluSx SINE Alu -31 281 54 30 83 0 0 chr11 108692345 108692417 -40091055 + AT_rich Low_complexity Low_complexity 1 72 0 202 355 148 9 chr11 108692427 108692644 -40090828 + L2 LINE L2 1707 1953 -1361 316 364 98 41 chr11 108692714 108693293 -40090179 + L2 LINE L2 2416 3025 -247 1828 120 42 32 chr11 108693467 108693750 -40089722 - AluSg SINE Alu -24 286 1 1346 195 11 29 chr11 108693776 108694048 -40089424 + AluJo SINE Alu 24 290 -22 837 238 159 35 chr11 108695854 108696224 -40087248 + MER47B DNA MER2_type 2 417 -1 1878 100 4 15 chr11 108696479 108696739 -40086733 - AluSx SINE Alu -55 257 1 517 265 51 20 chr11 108696986 108697182 -40086290 - MLT1L LTR MaLR -16 599 398 468 261 31 0 chr11 108697298 108697428 -40086044 - MLT1L LTR MaLR -381 234 101 2369 83 3 10 chr11 108698766 108699078 -40084394 + AluY SINE Alu 1 310 -1 363 233 44 0 chr11 108699225 108699315 -40084157 + L1MDa LINE L1 17 110 -6430 1261 281 70 17 chr11 108699348 108699764 -40083708 + L1MDa LINE L1 589 1026 -5514 5215 264 53 20 chr11 108699768 108701418 -40082054 + L1PA11 LINE L1 7 1710 -5871 * 7670 223 19 27 chr11 108701393 108702628 -40080844 + L1PA11 LINE L1 2212 3424 -4160 2190 114 0 0 chr11 108702628 108702926 -40080546 + AluY SINE Alu 1 298 -13 7670 223 19 27 chr11 108702926 108703843 -40079629 + L1PA11 LINE L1 3424 4347 -3237 2133 126 0 0 chr11 108703843 108704158 -40079314 + AluSx SINE Alu 1 315 0 11403 161 23 2 chr11 108704169 108707018 -40076454 + L1PA11 LINE L1 4729 7611 -1 4092 212 65 32 chr11 108707020 108707736 -40075736 + L1MDa LINE L1 1012 1703 -4837 204 40 0 0 chr11 108707736 108707761 -40075711 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 4092 212 65 32 chr11 108707761 108708433 -40075039 + L1MDa LINE L1 1703 2446 -4094 1501 220 49 5 chr11 108708542 108708988 -40074484 + L1MDa LINE L1 2658 3123 -3417 199 380 91 0 chr11 108708999 108709120 -40074352 + L2 LINE L2 3161 3292 -21 1947 238 60 87 chr11 108709372 108710507 -40072965 + L1ME LINE L1 12 1409 -4592 1775 171 0 0 chr11 108710532 108710812 -40072660 + AluSx SINE Alu 21 300 -12 251 322 34 27 chr11 108710845 108710994 -40072478 + L1MC5 LINE L1 6687 6836 -1125 * 285 261 83 50 chr11 108710991 108711209 -40072263 + L1MDa LINE L1 1649 1873 -4667 1670 169 3 40 chr11 108711475 108711777 -40071695 + AluJo SINE Alu 3 293 -19 2918 122 28 0 chr11 108712106 108712566 -40070906 + L1PB1 LINE L1 5679 6151 0 252 300 31 55 chr11 108712593 108712832 -40070640 - L2 LINE L2 -1034 2280 1993 559 215 36 124 chr11 108712923 108713020 -40070452 + L1MC5 LINE L1 6741 6845 -1116 1947 124 4 0 chr11 108713020 108713293 -40070179 + AluSx SINE Alu 29 302 -10 559 215 36 124 chr11 108713293 108713525 -40069947 + L1MC5 LINE L1 6845 7041 -920 235 220 136 59 chr11 108714435 108714553 -40068919 - MIR SINE MIR 0 262 136 833 198 44 6 chr11 108714806 108714988 -40068484 + MER5A DNA MER1_type 1 189 0 358 345 17 0 chr11 108714988 108715107 -40068365 + MER5A DNA MER1_type 7 127 -62 635 259 49 32 chr11 108716126 108716311 -40067161 - MIR3 SINE MIR -6 202 15 1943 169 82 22 chr11 108716944 108716994 -40066478 - MSTA LTR MaLR -1 427 381 2354 86 0 46 chr11 108716994 108717318 -40066154 - AluY SINE Alu -2 309 1 1943 169 82 22 chr11 108717318 108717670 -40065802 - MSTA LTR MaLR -47 381 1 8427 174 13 17 chr11 108717675 108719327 -40064145 - MSTA-int LTR MaLR -6 1645 1 2021 158 102 13 chr11 108719327 108719720 -40063752 - MSTA LTR MaLR 0 428 1 3180 127 47 4 chr11 108720166 108720656 -40062816 + MER9 LTR ERVK 1 511 0 1787 121 145 15 chr11 108720878 108721210 -40062262 + THE1C LTR MaLR 1 375 0 338 221 42 11 chr11 108721599 108721694 -40061778 + MER115 DNA AcHobo 593 690 -3 222 367 22 11 chr11 108721696 108721786 -40061686 + L3 LINE CR1 1404 1494 -83 201 231 0 0 chr11 108721786 108721825 -40061647 + CT-rich Low_complexity Low_complexity 3 41 0 628 130 0 62 chr11 108722101 108722293 -40061179 + (TATG)n Simple_repeat Simple_repeat 1 180 0 216 158 0 0 chr11 108722674 108722712 -40060760 + CT-rich Low_complexity Low_complexity 2 39 0 309 51 0 0 chr11 108722712 108722751 -40060721 + (CA)n Simple_repeat Simple_repeat 1 39 0 2090 116 7 0 chr11 108722929 108723231 -40060241 - AluSx SINE Alu -7 305 2 26 0 0 0 chr11 108723239 108723265 -40060207 + AT_rich Low_complexity Low_complexity 1 26 0 448 261 26 0 chr11 108724052 108724167 -40059305 - MER63 DNA MER1_type -273 789 672 209 182 0 0 chr11 108724169 108724202 -40059270 + polypurine Low_complexity Low_complexity 1 33 0 2154 114 7 0 chr11 108725176 108725500 -40057972 + AluSg SINE Alu 1 310 0 424 192 100 15 chr11 108725580 108725710 -40057762 + MER103 DNA DNA 16 156 -10 22 0 0 0 chr11 108726781 108726803 -40056669 + AT_rich Low_complexity Low_complexity 1 22 0 316 253 50 10 chr11 108727315 108727414 -40056058 + L1ME4a LINE L1 6018 6120 -1 198 209 70 0 chr11 108729033 108729076 -40054396 + L2 LINE L2 3263 3308 -5 407 239 0 80 chr11 108729281 108729394 -40054078 - MIR SINE MIR -56 206 103 237 65 0 0 chr11 108729588 108729619 -40053853 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 389 248 143 29 chr11 108730263 108730473 -40052999 + HAL1 LINE L1 2228 2461 -46 2472 161 60 12 chr11 108730474 108730977 -40052495 - L1MB4 LINE L1 -1 6179 5653 204 254 30 0 chr11 108731057 108731124 -40052348 + (TGAA)n Simple_repeat Simple_repeat 2 70 0 359 210 40 51 chr11 108731245 108731375 -40052097 + MIR SINE MIR 6 143 -65 220 337 84 12 chr11 108731494 108731577 -40051895 - L2 LINE L2 -62 3210 3122 289 292 58 8 chr11 108732318 108732438 -40051034 + MER110A LTR ERV1 343 468 0 2345 90 10 0 chr11 108732963 108733264 -40050208 + AluSp SINE Alu 1 304 -9 618 270 75 44 chr11 108733511 108733613 -40049859 - MIR SINE MIR 0 262 165 1482 184 119 3 chr11 108733613 108733940 -40049532 + MLT1A1 LTR MaLR 1 365 0 618 270 75 44 chr11 108733940 108734089 -40049383 - MIR SINE MIR -97 165 3 307 305 93 40 chr11 108734366 108734517 -40048955 + MIR3 SINE MIR 26 184 -24 2121 99 7 3 chr11 108734778 108735070 -40048402 + AluSc SINE Alu 1 293 -16 865 208 33 14 chr11 108736326 108736538 -40046934 - L1MA9 LINE L1 -38 6274 6059 1413 163 14 28 chr11 108738085 108738368 -40045104 - L1MB7 LINE L1 -97 6087 5809 400 297 28 14 chr11 108738450 108738662 -40044810 + L1ME LINE L1 5560 5774 -347 1789 179 0 3 chr11 108738662 108738953 -40044519 - 7SLRNA srpRNA srpRNA -9 311 22 210 177 25 89 chr11 108740906 108740985 -40042487 + MIR SINE MIR 189 262 0 425 297 34 0 chr11 108741209 108741327 -40042145 - L2 LINE L2 -211 3061 2940 794 205 68 0 chr11 108741478 108741668 -40041804 + L1MC4 LINE L1 7339 7541 -501 2690 186 21 37 chr11 108741677 108742792 -40040680 + L1M3 LINE L1 4671 5784 -387 1584 195 50 17 chr11 108742792 108743084 -40040388 + AluJb SINE Alu 1 305 -7 1044 70 0 0 chr11 108743084 108743226 -40040246 + (GGAA)n Simple_repeat Simple_repeat 3 144 0 611 156 0 0 chr11 108743687 108743783 -40039689 - AluJ/FLAM SINE Alu -215 97 2 2220 101 14 14 chr11 108746940 108747237 -40036235 + AluSx SINE Alu 2 298 -14 315 302 8 23 chr11 108747793 108747922 -40035550 - MLT1K LTR MaLR -321 267 141 2320 88 3 0 chr11 108748634 108748929 -40034543 - AluSq SINE Alu -17 296 1 342 329 15 7 chr11 108748985 108749122 -40034350 + L2 LINE L2 2274 2411 -903 254 361 68 37 chr11 108749159 108749455 -40034017 + L2 LINE L2 2549 2853 -461 550 213 207 0 chr11 108749612 108749762 -40033710 - MER5A DNA MER1_type 0 189 9 1034 184 0 0 chr11 108749794 108749962 -40033510 - AluSg/x SINE Alu -20 290 123 306 107 107 0 chr11 108749962 108750074 -40033398 + (TA)n Simple_repeat Simple_repeat 2 125 0 315 302 8 23 chr11 108750739 108750868 -40032604 - MLT1K LTR MaLR -321 267 141 184 286 82 0 chr11 108751031 108751080 -40032392 - MIR SINE MIR -141 121 69 2018 119 14 0 chr11 108751175 108751460 -40032012 + AluSx SINE Alu 11 299 -13 579 230 8 8 chr11 108751660 108751786 -40031686 + FLAM_A SINE Alu 1 126 -7 2104 121 7 0 chr11 108752851 108753162 -40030310 - AluSx SINE Alu 0 313 1 204 156 0 22 chr11 108753989 108754034 -40029438 + T-rich Low_complexity Low_complexity 5 48 0 180 194 242 0 chr11 108754931 108754993 -40028479 + MIR SINE MIR 64 140 -122 481 241 9 113 chr11 108755914 108756099 -40027373 - L2 LINE L2 -4 3309 3147 1219 188 50 102 chr11 108756099 108756482 -40026990 + MLT1A1 LTR MaLR 1 363 -2 481 241 9 113 chr11 108756482 108756508 -40026964 - L2 LINE L2 -166 3147 3120 306 283 121 0 chr11 108756523 108756622 -40026850 + MIR SINE MIR 63 173 -89 199 364 15 0 chr11 108756746 108756812 -40026660 - MIR SINE MIR -193 69 3 304 266 0 0 chr11 108756835 108756914 -40026558 - MIR SINE MIR -51 211 133 256 280 126 14 chr11 108756949 108757092 -40026380 + LTR50 LTR ERVL 503 661 -134 271 250 12 0 chr11 108757174 108757258 -40026214 + LTR33A LTR ERVL 436 520 -3 252 244 49 16 chr11 108757651 108757774 -40025698 + L1ME4a LINE L1 5993 6119 -2 336 261 150 72 chr11 108758082 108758262 -40025210 - MIR3 SINE MIR -5 203 10 1719 136 68 31 chr11 108758336 108758660 -40024812 + MER44D DNA MER2_type 2 607 -2 22 0 0 0 chr11 108758688 108758710 -40024762 + AT_rich Low_complexity Low_complexity 1 22 0 1335 198 78 62 chr11 108759498 108759552 -40023920 - L1MC4 LINE L1 0 8042 7990 2163 114 7 3 chr11 108759552 108759850 -40023622 + AluSq SINE Alu 1 299 -14 2318 104 10 0 chr11 108759850 108760159 -40023313 + AluSx SINE Alu 1 312 0 2100 125 3 28 chr11 108760159 108760480 -40022992 + AluSp SINE Alu 1 313 0 1335 198 78 62 chr11 108760480 108760568 -40022904 - L1MC4 LINE L1 -52 7990 7905 252 0 0 0 chr11 108760568 108760596 -40022876 + (CA)n Simple_repeat Simple_repeat 2 29 0 1335 198 78 62 chr11 108760596 108760914 -40022558 - L1MC4 LINE L1 -137 7905 7572 234 0 0 0 chr11 108761103 108761129 -40022343 + (A)n Simple_repeat Simple_repeat 1 26 0 545 231 44 31 chr11 108761659 108761819 -40021653 + MIR SINE MIR 100 261 -1 2159 131 50 25 chr11 108761933 108762337 -40021135 - MSTA LTR MaLR -14 414 1 326 331 16 8 chr11 108762385 108762512 -40020960 + MER91B DNA MER1_type 1 128 -62 22 0 0 0 chr11 108762928 108762950 -40020522 + AT_rich Low_complexity Low_complexity 1 22 0 428 294 73 0 chr11 108763991 108764127 -40019345 - MIR3 SINE MIR -21 187 42 407 267 53 135 chr11 108764242 108764523 -40018949 + MIR SINE MIR 5 262 0 561 338 15 0 chr11 108765148 108765346 -40018126 + MIR SINE MIR 6 206 -56 380 308 43 17 chr11 108765503 108765620 -40017852 + L2 LINE L2 3153 3272 0 234 328 174 31 chr11 108765689 108765884 -40017588 + L2 LINE L2 3049 3271 -1 510 348 109 36 chr11 108767764 108768432 -40015040 - L2 LINE L2 0 3272 2551 526 187 28 0 chr11 108768807 108768914 -40014558 - MLT1F1 LTR MaLR -103 464 355 21 0 0 0 chr11 108770489 108770510 -40012962 + AT_rich Low_complexity Low_complexity 1 21 0 768 168 32 0 chr11 108770551 108770676 -40012796 - FLAM_C SINE Alu -3 130 2 491 252 14 28 chr11 108770767 108770910 -40012562 - L2 LINE L2 -1 3312 3172 288 208 97 0 chr11 108770912 108770984 -40012488 + MIR SINE MIR 181 259 -3 21 0 0 0 chr11 108771711 108771732 -40011740 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr11 108771894 108771923 -40011549 + AT_rich Low_complexity Low_complexity 1 29 0 331 176 107 23 chr11 108772302 108772433 -40011039 + MER113 DNA MER1_type? 7 148 -373 295 230 40 14 chr11 108772520 108772594 -40010878 + L3 LINE CR1 1432 1507 -70 297 220 0 0 chr11 108773266 108773325 -40010147 - MER113 DNA MER1_type? 0 521 463 317 198 87 16 chr11 108773428 108773554 -40009918 - MER113 DNA MER1_type? -375 146 12 28 0 0 0 chr11 108774172 108774200 -40009272 + AT_rich Low_complexity Low_complexity 1 28 0 980 107 54 63 chr11 108774405 108774610 -40008862 - L1MA9 LINE L1 0 6376 6174 1716 165 71 6 chr11 108774615 108774937 -40008535 + MER7A DNA MER2_type 6 346 0 410 122 54 0 chr11 108774942 108775016 -40008456 - L1MA9 LINE L1 -214 6162 6085 1121 162 1 39 chr11 108775048 108775335 -40008137 - L1MA9 LINE L1 -734 5621 5368 1613 155 0 44 chr11 108775340 108775656 -40007816 - AluJo SINE Alu -10 302 1 1331 198 59 0 chr11 108775692 108776030 -40007442 - L1MA9 LINE L1 -840 5370 5013 9562 165 28 10 chr11 108776030 108778697 -40004775 - L1PA13 LINE L1 -3 6811 4106 5035 185 18 6 chr11 108778707 108779990 -40003482 - L1PA13 LINE L1 -4094 2703 1396 3455 218 191 20 chr11 108780003 108781025 -40002447 - L1PA13 LINE L1 -5589 1198 2 817 216 19 9 chr11 108781034 108781247 -40002225 - L1MA9 LINE L1 -1188 5022 4808 795 162 25 54 chr11 108781435 108781607 -40001865 - L1MA9 LINE L1 -1734 4476 4311 2057 151 3 0 chr11 108781607 108781906 -40001566 - AluSq SINE Alu -13 300 1 795 162 25 54 chr11 108781906 108781974 -40001498 - L1MA9 LINE L1 -1899 4311 4243 * 5726 176 55 16 chr11 108781970 108784496 -39998976 - L1PB1 LINE L1 0 6867 6 2555 220 75 14 chr11 108784731 108785876 -39997596 - L1MA9 LINE L1 -4220 1991 817 752 201 79 57 chr11 108785966 108786195 -39997277 - L1MA9 LINE L1 -5907 234 1 834 207 14 150 chr11 108786455 108786590 -39996882 + MLT1A1 LTR MaLR 3 155 -210 2189 114 93 3 chr11 108786590 108786924 -39996548 + THE1B LTR MaLR 1 364 0 834 207 14 150 chr11 108786924 108787208 -39996264 + MLT1A1 LTR MaLR 155 365 0 2061 138 0 0 chr11 108787857 108788153 -39995319 - AluSx SINE Alu -14 298 3 316 300 0 22 chr11 108788310 108788400 -39995072 + MER5A DNA MER1_type 1 88 -101 401 341 45 8 chr11 108788404 108788536 -39994936 - LTR16A LTR ERVL -199 251 115 264 285 7 36 chr11 108788974 108789111 -39994361 - HERV16 LTR ERVL -330 4666 4534 589 376 43 5 chr11 108789267 108789684 -39993788 - HERV16 LTR ERVL -874 4780 4348 1933 186 40 35 chr11 108789685 108790115 -39993357 + MSTB1 LTR MaLR 1 432 0 6593 220 52 18 chr11 108790115 108791712 -39991760 + MSTB1-int LTR MaLR 1 1651 0 2639 156 0 11 chr11 108791712 108792149 -39991323 + MSTB1 LTR MaLR 1 432 0 1675 313 65 55 chr11 108792152 108794091 -39989381 - HERV16 LTR ERVL -1332 4322 2396 329 291 19 14 chr11 108794096 108794248 -39989224 - LTR16A1 LTR ERVL -296 154 1 387 0 0 0 chr11 108794584 108794627 -39988845 + (CA)n Simple_repeat Simple_repeat 1 43 0 183 320 0 0 chr11 108794825 108794875 -39988597 + MIR SINE MIR 2 51 -211 22 0 0 0 chr11 108795014 108795036 -39988436 + AT_rich Low_complexity Low_complexity 1 22 0 2022 104 0 3 chr11 108795123 108795422 -39988050 + L1PA8 LINE L1 5875 6172 0 2536 214 33 27 chr11 108795523 108796187 -39987285 - L1ME1 LINE L1 -104 6062 5395 308 330 0 0 chr11 108796212 108796300 -39987172 + MIR SINE MIR 47 134 -128 1631 256 71 7 chr11 108797409 108797846 -39985626 - MLT2B1 LTR ERVL -55 465 1 529 362 11 15 chr11 108798717 108798985 -39984487 + LTR16A LTR ERVL 16 282 -168 190 260 110 0 chr11 108799128 108799201 -39984271 - MIR SINE MIR -28 234 154 182 317 168 30 chr11 108800175 108800276 -39983196 + L2 LINE L2 3153 3267 -5 1972 162 7 0 chr11 108800283 108800579 -39982893 + AluSx SINE Alu 1 298 -14 248 352 72 31 chr11 108800583 108800901 -39982571 - L2 LINE L2 -1491 1823 1493 5809 138 25 1 chr11 108800963 108801821 -39981651 - L1PA4 LINE L1 -1 6154 5277 493 266 26 39 chr11 108801939 108802093 -39981379 + MER5B DNA MER1_type 27 178 0 469 271 90 28 chr11 108802383 108802560 -39980912 - MER5A DNA MER1_type -1 188 1 2248 162 8 8 chr11 108802989 108803377 -39980095 - MLT1B LTR MaLR -2 388 1 1750 118 96 0 chr11 108803566 108803837 -39979635 - AluSx SINE Alu -15 297 1 609 246 33 33 chr11 108804382 108804597 -39978875 - L1ME1 LINE L1 -7 6159 5945 5544 158 20 19 chr11 108804631 108805144 -39978328 - L1MA9 LINE L1 -2 6310 5799 243 88 0 0 chr11 108805144 108805178 -39978294 + (TG)n Simple_repeat Simple_repeat 1 34 0 5544 158 20 19 chr11 108805178 108806223 -39977249 - L1MA9 LINE L1 -513 5799 4745 211 280 53 27 chr11 108808004 108808079 -39975393 - MIR SINE MIR -90 172 96 412 367 112 11 chr11 108808753 108809031 -39974441 + L2 LINE L2 2553 2858 -456 218 308 0 0 chr11 108809303 108809355 -39974117 + L2 LINE L2 3221 3272 0 502 278 76 16 chr11 108809438 108809808 -39973664 - L1MEc LINE L1 -4818 1578 1187 276 184 10 51 chr11 108809826 108809841 -39973631 + (TA)n Simple_repeat Simple_repeat 2 16 -79 2118 166 3 3 chr11 108809841 108810208 -39973264 - L1PB3 LINE L1 -6 6148 5782 276 184 10 51 chr11 108810208 108810290 -39973182 + (TA)n Simple_repeat Simple_repeat 16 95 0 3442 144 17 41 chr11 108810291 108810751 -39972721 - L1PB3 LINE L1 -360 5794 5324 1081 36 0 14 chr11 108810751 108810890 -39972582 - L1PA4 LINE L1 -3 6152 6016 3442 144 17 41 chr11 108810890 108811687 -39971785 - L1PB3 LINE L1 -830 5324 4568 8457 221 11 88 chr11 108811688 108814726 -39968746 - L1 LINE L1 -943 5919 3117 40594 49 6 1 chr11 108814733 108820840 -39962632 - L1PA4 LINE L1 -11 6144 2 8303 158 71 5 chr11 108820842 108823644 -39959828 - L1PBa LINE L1 -3731 3131 1 845 352 54 19 chr11 108823701 108824565 -39958907 - L1MEc LINE L1 -5463 933 39 2444 233 114 14 chr11 108824796 108825658 -39957814 - L1MC4 LINE L1 -144 7898 6951 276 273 0 0 chr11 108825678 108825744 -39957728 - MIR SINE MIR -119 143 78 866 311 55 16 chr11 108825747 108826126 -39957346 - LTR16C LTR ERVL -2 489 96 617 298 71 8 chr11 108826678 108826754 -39956718 + MIR SINE MIR 8 78 -184 2096 167 59 9 chr11 108826754 108827197 -39956275 + MLT1C LTR MaLR 1 465 -2 617 298 71 8 chr11 108827197 108827358 -39956114 + MIR SINE MIR 78 260 -2 40784 36 24 1 chr11 108827801 108833254 -39950218 + L1P1 LINE L1 1 5581 -574 738 217 76 6 chr11 108833355 108833501 -39949971 + AluJb SINE Alu 145 304 -8 1041 65 0 0 chr11 108833501 108833639 -39949833 + (GGAA)n Simple_repeat Simple_repeat 3 140 0 1713 176 47 5 chr11 108833649 108834029 -39949443 + L1MB2 LINE L1 5776 6171 0 2372 91 0 0 chr11 108834039 108834336 -39949136 + AluY SINE Alu 1 297 -14 17011 164 23 22 chr11 108834385 108836577 -39946895 + L1PB1 LINE L1 26 2216 -4646 2459 111 19 11 chr11 108836577 108836938 -39946534 + THE1B LTR MaLR 1 364 0 17011 164 23 22 chr11 108836938 108837723 -39945749 + L1PB1 LINE L1 2216 2999 -3863 1779 175 3 0 chr11 108837723 108838008 -39945464 + AluSx SINE Alu 1 286 -26 17011 164 23 22 chr11 108838008 108840239 -39943233 + L1PB1 LINE L1 2999 5229 -1633 608 62 0 0 chr11 108840242 108840336 -39943136 + L1PA3 LINE L1 10 380 -6081 * 38211 33 26 2 chr11 108840303 108845779 -39937693 + L1PA3 LINE L1 893 6470 0 6407 141 9 9 chr11 108845775 108847418 -39936054 + L1PB1 LINE L1 5222 6865 -2 * 21 0 0 0 chr11 108847418 108847439 -39936033 + AT_rich Low_complexity Low_complexity 1 21 0 180 77 0 0 chr11 108847454 108847480 -39935992 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1467 215 91 21 chr11 108847481 108847804 -39935668 + L1MC4 LINE L1 7567 7927 -115 252 0 0 0 chr11 108847804 108847832 -39935640 + (TG)n Simple_repeat Simple_repeat 2 29 0 1467 215 91 21 chr11 108847832 108847926 -39935546 + L1MC4 LINE L1 7927 8013 -29 281 161 0 18 chr11 108847930 108847986 -39935486 - Alu SINE Alu 0 301 247 289 350 0 0 chr11 108848093 108848215 -39935257 + G-rich Low_complexity Low_complexity 1 122 0 1435 163 18 4 chr11 108848229 108848505 -39934967 - AluSx SINE Alu -30 282 3 698 268 34 5 chr11 108848507 108848712 -39934760 - MLT1C LTR MaLR -67 400 190 14312 133 27 41 chr11 108848722 108850687 -39932785 - Tigger1 DNA MER2_type -2 2416 490 853 158 0 8 chr11 108850687 108850814 -39932658 + FLAM_C SINE Alu 1 126 -7 14312 133 27 41 chr11 108850814 108851298 -39932174 - Tigger1 DNA MER2_type -1928 490 1 2243 81 35 0 chr11 108851355 108851639 -39931833 - AluSq SINE Alu -10 303 10 2272 75 0 0 chr11 108853167 108853471 -39930001 - AluSg SINE Alu 0 304 1 2196 114 0 13 chr11 108854260 108854568 -39928904 - AluSg SINE Alu -6 304 1 817 217 12 0 chr11 108854873 108855034 -39928438 - MER5A DNA MER1_type 0 189 27 210 224 0 0 chr11 108855057 108855106 -39928366 - L2 LINE L2 0 3313 3265 417 262 148 30 chr11 108855405 108855607 -39927865 + L1MC4 LINE L1 7653 7878 -164 1871 126 0 4 chr11 108855607 108855885 -39927587 - AluSg SINE Alu -9 301 25 1697 120 0 26 chr11 108855922 108856189 -39927283 + AluSx SINE Alu 1 260 -52 231 247 0 39 chr11 108856223 108856300 -39927172 - L1MC4 LINE L1 -1355 6687 6614 * 238 196 0 0 chr11 108856258 108856309 -39927163 + L1MC4 LINE L1 6652 6702 -1340 * 400 281 7 41 chr11 108856296 108856442 -39927030 + L1MC4 LINE L1 7902 8042 0 2110 108 0 3 chr11 108857565 108857851 -39925621 + AluSg SINE Alu 1 285 -25 240 35 0 0 chr11 108857851 108857880 -39925592 + (TA)n Simple_repeat Simple_repeat 1 29 0 283 208 0 0 chr11 108858407 108858460 -39925012 + MIR SINE MIR 209 261 -1 206 349 47 12 chr11 108858463 108858549 -39924923 - MIR SINE MIR -105 157 69 217 338 29 0 chr11 108858638 108858706 -39924766 + L2 LINE L2 3235 3304 -9 441 0 0 0 chr11 108858706 108858755 -39924717 + (TG)n Simple_repeat Simple_repeat 2 50 0 2332 99 0 0 chr11 108858893 108859197 -39924275 + AluSq SINE Alu 1 304 -9 226 241 0 63 chr11 108859197 108859276 -39924196 + MIR SINE MIR 133 206 -56 879 133 0 0 chr11 108859614 108859734 -39923738 + FLAM_C SINE Alu 7 126 -17 1815 131 29 11 chr11 108860720 108860995 -39922477 - AluSx SINE Alu -32 280 1 739 130 40 2 chr11 108861050 108861191 -39922281 + L1MB4 LINE L1 5858 6001 -170 1746 133 10 34 chr11 108862769 108863062 -39920410 - AluSx SINE Alu -26 286 1 201 253 12 36 chr11 108864029 108864112 -39919360 + (CGGG)n Simple_repeat Simple_repeat 4 84 0 22 35 0 0 chr11 108864522 108864551 -39918921 + GC_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr11 108865042 108865064 -39918408 + AT_rich Low_complexity Low_complexity 1 22 0 218 29 59 0 chr11 108865640 108865674 -39917798 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 21 0 0 0 chr11 108867182 108867203 -39916269 + AT_rich Low_complexity Low_complexity 1 21 0 2503 67 0 13 chr11 108867505 108867819 -39915653 - AluY SINE Alu -1 310 1 227 287 115 38 chr11 108867863 108868020 -39915452 + MIR SINE MIR 8 176 -86 1636 143 31 27 chr11 108868440 108868733 -39914739 - AluJb SINE Alu -8 304 11 698 88 33 155 chr11 108868748 108868929 -39914543 + L1MA8 LINE L1 6133 6291 0 2147 121 10 3 chr11 108870849 108871154 -39912318 - AluSx SINE Alu -5 307 1 2225 111 7 7 chr11 108871668 108871975 -39911497 + AluSx SINE Alu 1 307 -5 2010 113 0 4 chr11 108872252 108872526 -39910946 - AluSq SINE Alu -40 273 1 1685 181 10 7 chr11 108872865 108873168 -39910304 + AluJb SINE Alu 1 304 -8 2222 116 0 19 chr11 108873257 108873576 -39909896 - AluSq SINE Alu 0 313 1 927 206 0 0 chr11 108873582 108873757 -39909715 - FAM SINE Alu -5 44 1 2580 35 0 19 chr11 108874086 108874403 -39909069 - AluY SINE Alu 0 311 1 33 25 0 0 chr11 108874946 108874986 -39908486 + AT_rich Low_complexity Low_complexity 1 40 0 772 200 0 0 chr11 108874986 108875111 -39908361 - FLAM_C SINE Alu -17 126 2 1747 151 4 0 chr11 108875134 108875399 -39908073 + AluJb SINE Alu 24 289 -23 1258 128 5 35 chr11 108875408 108875611 -39907861 + AluSp SINE Alu 94 290 -23 29 28 0 0 chr11 108875616 108875652 -39907820 + AT_rich Low_complexity Low_complexity 1 36 0 246 372 88 34 chr11 108876029 108876325 -39907147 + L2 LINE L2 2247 2558 -756 21 0 0 0 chr11 108876332 108876353 -39907119 + AT_rich Low_complexity Low_complexity 1 21 0 213 39 0 0 chr11 108876399 108876425 -39907047 + (TA)n Simple_repeat Simple_repeat 2 27 0 320 317 106 66 chr11 108876529 108876832 -39906640 + L1M2 LINE L1 819 1133 -5716 824 215 9 55 chr11 108877187 108877406 -39906066 - AluJo SINE Alu -103 209 1 237 368 64 16 chr11 108878406 108878531 -39904941 + L2 LINE L2 3183 3313 0 4367 247 40 30 chr11 108879470 108881429 -39902043 + L1PBa LINE L1 3 1644 -5219 2103 106 7 0 chr11 108881431 108881715 -39901757 + AluSx SINE Alu 1 286 -26 406 309 0 58 chr11 108881738 108881929 -39901543 + C-rich Low_complexity Low_complexity 1 180 0 189 0 0 0 chr11 108882033 108882054 -39901418 + (TA)n Simple_repeat Simple_repeat 1 21 0 2053 141 0 7 chr11 108882060 108882365 -39901107 - AluSx SINE Alu -9 303 1 34 65 0 0 chr11 108882582 108882644 -39900828 + AT_rich Low_complexity Low_complexity 1 62 0 2284 105 10 3 chr11 108883100 108883406 -39900066 - AluSq SINE Alu -5 308 1 1838 184 32 3 chr11 108883973 108884283 -39899189 - MER7A DNA MER2_type -1 345 29 2161 97 28 0 chr11 108884457 108884745 -39898727 - AluSc SINE Alu -13 296 1 762 273 103 4 chr11 108885093 108885240 -39898232 + L2 LINE L2 3002 3133 -180 2367 87 6 13 chr11 108885240 108885552 -39897920 - AluSp SINE Alu -3 310 1 762 273 103 4 chr11 108885552 108885646 -39897826 + L2 LINE L2 3133 3267 -46 788 297 29 0 chr11 108886401 108886640 -39896832 + MIR SINE MIR 11 256 -6 1983 142 7 7 chr11 108886837 108887146 -39896326 + AluSx SINE Alu 1 309 -3 1290 210 13 7 chr11 108887227 108887527 -39895945 - AluSx SINE Alu 0 302 1 2157 83 0 4 chr11 108887807 108888083 -39895389 - AluSg SINE Alu -35 275 1 2163 97 0 26 chr11 108888125 108888434 -39895038 - AluSp SINE Alu -12 301 1 314 23 23 0 chr11 108888839 108888882 -39894590 + (CAA)n Simple_repeat Simple_repeat 2 45 0 238 264 118 56 chr11 108888902 108889046 -39894426 + MIR3 SINE MIR 41 193 -15 2304 77 6 29 chr11 108889456 108889769 -39893703 - AluSq SINE Alu -6 307 2 21 0 0 0 chr11 108890610 108890631 -39892841 + AT_rich Low_complexity Low_complexity 1 21 0 338 292 36 68 chr11 108890720 108891104 -39892368 + L1MC5 LINE L1 7319 7690 -271 191 247 32 118 chr11 108891488 108891581 -39891891 + L2 LINE L2 3187 3271 -1 207 69 0 0 chr11 108892996 108893025 -39890447 + (TTTTTG)n Simple_repeat Simple_repeat 3 31 0 25 0 0 0 chr11 108893920 108893945 -39889527 + AT_rich Low_complexity Low_complexity 1 25 0 346 309 80 19 chr11 108894222 108894384 -39889088 - MIR SINE MIR -78 184 13 2215 121 0 0 chr11 108894880 108895186 -39888286 - AluSx SINE Alu -6 306 1 211 171 0 0 chr11 108896411 108896446 -39887026 - L2 LINE L2 -21 3251 3217 225 188 12 150 chr11 108896496 108896576 -39886896 - MIR SINE MIR -84 124 56 5203 178 65 29 chr11 108896586 108897834 -39885638 - L1PBb LINE L1 -3660 2543 1341 2156 108 0 0 chr11 108897834 108898122 -39885350 - AluSg SINE Alu -20 290 3 5203 178 65 29 chr11 108898122 108898394 -39885078 - L1PBb LINE L1 -4862 1341 1080 312 70 0 0 chr11 108898394 108898437 -39885035 + (TG)n Simple_repeat Simple_repeat 2 44 0 5203 178 65 29 chr11 108898437 108898631 -39884841 - L1PBb LINE L1 -5123 1080 758 1458 187 191 25 chr11 108898647 108899117 -39884355 - LTR10A LTR ERV1 -61 548 1 5485 240 16 27 chr11 108899120 108900626 -39882846 - LTR10A-int LTR ERV1 -4 6645 5156 8738 107 27 15 chr11 108900708 108902929 -39880543 - LTR10A-int LTR ERV1 -3924 2972 712 654 238 56 115 chr11 108903351 108903990 -39879482 - LTR10A-int LTR ERV1 -6064 585 1 1698 130 53 66 chr11 108903999 108904376 -39879096 - LTR10A LTR ERV1 -61 548 177 1246 130 258 54 chr11 108904361 108904714 -39878758 - LTR10A LTR ERV1 -172 437 13 * 2005 139 3 7 chr11 108904792 108905095 -39878377 - AluSq SINE Alu -11 302 1 194 146 0 24 chr11 108905097 108905138 -39878334 + (TG)n Simple_repeat Simple_repeat 1 40 0 1151 157 0 16 chr11 108905138 108905323 -39878149 - AluSc SINE Alu -10 299 118 1434 184 11 14 chr11 108905329 108905606 -39877866 - L1PBb LINE L1 -5534 670 395 26 30 0 0 chr11 108905718 108905751 -39877721 + GC_rich Low_complexity Low_complexity 1 33 0 243 146 0 0 chr11 108905773 108905814 -39877658 + (A)n Simple_repeat Simple_repeat 1 41 0 436 308 88 25 chr11 108906093 108906333 -39877139 + MIR SINE MIR 2 256 -6 823 133 31 0 chr11 108906492 108906620 -39876852 - FLAM_C SINE Alu 0 133 2 955 125 6 24 chr11 108906736 108906904 -39876568 - AluSc SINE Alu -9 300 136 182 224 0 20 chr11 108906907 108906956 -39876516 + L3 LINE CR1 1529 1576 -1 2549 167 43 23 chr11 108907503 108908066 -39875406 - L1MB7 LINE L1 -9 6175 5602 24 0 0 0 chr11 108908150 108908174 -39875298 + AT_rich Low_complexity Low_complexity 1 24 0 398 238 129 0 chr11 108908444 108908545 -39874927 - L2 LINE L2 -4 3309 3196 278 281 16 0 chr11 108908752 108908816 -39874656 - L2 LINE L2 -4 3309 3245 273 279 137 50 chr11 108908832 108908993 -39874479 + MIR SINE MIR 81 255 -7 1877 146 6 22 chr11 108908993 108909308 -39874164 + AluJo SINE Alu 3 312 0 25 0 10 0 chr11 108909437 108909507 -39873965 + AT_rich Low_complexity Low_complexity 1 25 0 1252 139 67 30 chr11 108909513 108909780 -39873692 - Tigger7 DNA MER2_type 0 2587 2311 1969 109 0 0 chr11 108909807 108910063 -39873409 - AluSx SINE Alu -17 295 40 1064 231 47 0 chr11 108910130 108910385 -39873087 - Tigger7 DNA MER2_type -465 268 2 2203 102 0 17 chr11 108910991 108911286 -39872186 - AluSx SINE Alu -13 299 10 1476 120 18 83 chr11 108913015 108913291 -39870181 + AluJo SINE Alu 6 263 -49 252 143 0 0 chr11 108913346 108913388 -39870084 + (A)n Simple_repeat Simple_repeat 1 42 0 436 308 88 25 chr11 108913667 108913907 -39869565 + MIR SINE MIR 2 256 -6 823 133 31 0 chr11 108914066 108914194 -39869278 - FLAM_C SINE Alu 0 133 2 1313 84 0 0 chr11 108914310 108914476 -39868996 - AluSc SINE Alu -8 301 136 182 224 0 20 chr11 108914479 108914528 -39868944 + L3 LINE CR1 1529 1576 -1 2519 167 43 25 chr11 108915075 108915639 -39867833 - L1MB7 LINE L1 -9 6175 5602 24 0 0 0 chr11 108915723 108915747 -39867725 + AT_rich Low_complexity Low_complexity 1 24 0 398 238 129 0 chr11 108916017 108916118 -39867354 - L2 LINE L2 -4 3309 3196 278 281 16 0 chr11 108916325 108916389 -39867083 - L2 LINE L2 -4 3309 3245 273 279 137 50 chr11 108916405 108916566 -39866906 + MIR SINE MIR 81 255 -7 1805 149 7 11 chr11 108916566 108916878 -39866594 + AluJo SINE Alu 3 313 0 25 0 10 0 chr11 108917009 108917079 -39866393 + AT_rich Low_complexity Low_complexity 1 25 0 1252 139 67 30 chr11 108917085 108917352 -39866120 - Tigger7 DNA MER2_type 0 2587 2311 1934 109 0 4 chr11 108917379 108917636 -39865836 - AluSx SINE Alu -17 295 40 1064 231 47 0 chr11 108917703 108917958 -39865514 - Tigger7 DNA MER2_type -465 268 2 2104 108 7 33 chr11 108918564 108918869 -39864603 - AluSg SINE Alu -13 297 1 2233 96 0 7 chr11 108918874 108919167 -39864305 - AluSc SINE Alu -11 298 8 1862 148 14 10 chr11 108919701 108919992 -39863480 - AluJb SINE Alu -20 292 1 341 343 37 46 chr11 108920131 108920347 -39863125 + L1ME LINE L1 5357 5570 -551 228 284 14 0 chr11 108920404 108920478 -39862994 + MLT1L LTR MaLR 5 79 -536 345 213 93 47 chr11 108921730 108921880 -39861592 + MIR SINE MIR 41 197 -65 279 0 0 0 chr11 108922723 108922754 -39860718 + (TG)n Simple_repeat Simple_repeat 2 32 0 1762 156 3 58 chr11 108923079 108923405 -39860067 + AluJb SINE Alu 1 308 -4 1257 248 53 3 chr11 108923612 108923915 -39859557 + MER70B LTR ERVL 115 432 -146 23 0 0 0 chr11 108925058 108925081 -39858391 + AT_rich Low_complexity Low_complexity 1 23 0 391 238 40 99 chr11 108925579 108925686 -39857786 - MER112 DNA MER1_type -6 254 142 2607 56 0 0 chr11 108925686 108925988 -39857484 + AluY SINE Alu 1 302 -9 1847 135 7 0 chr11 108925997 108926271 -39857201 + AluSx SINE Alu 24 299 -13 391 238 40 99 chr11 108926271 108926405 -39857067 - MER112 DNA MER1_type -126 134 18 21 0 0 0 chr11 108928802 108928823 -39854649 + AT_rich Low_complexity Low_complexity 1 21 0 6370 206 32 61 chr11 108929298 108929797 -39853675 - L1MC2 LINE L1 -54 6290 5778 2054 123 0 3 chr11 108929797 108930105 -39853367 - AluSx SINE Alu 0 307 1 6370 206 32 61 chr11 108930105 108930725 -39852747 - L1MC2 LINE L1 -566 5778 5142 2273 80 14 0 chr11 108930725 108931013 -39852459 - AluSx SINE Alu -14 298 7 6370 206 32 61 chr11 108931013 108933448 -39850024 - L1MC2 LINE L1 -1202 5142 2841 2374 93 3 0 chr11 108933497 108933797 -39849675 - AluSg SINE Alu -9 301 1 993 161 134 106 chr11 108933839 108933983 -39849489 + AluJb SINE Alu 1 140 -162 2184 68 14 3 chr11 108933983 108934278 -39849194 + AluY SINE Alu 1 298 -13 993 161 134 106 chr11 108934278 108934425 -39849047 + AluJb SINE Alu 140 300 -2 291 271 12 0 chr11 108934671 108934756 -39848716 + MIR SINE MIR 177 262 0 227 268 110 12 chr11 108935581 108935663 -39847809 + MER21B LTR ERV1 1 90 -773 2075 245 104 18 chr11 108935685 108936453 -39847019 + MER21B LTR ERV1 19 852 -11 1790 205 43 17 chr11 108936911 108937379 -39846093 + L1MB7 LINE L1 5665 6144 -40 1049 151 6 6 chr11 108937489 108937655 -39845817 + AluJo SINE Alu 126 291 -21 405 78 125 0 chr11 108938569 108938633 -39844839 + MIR SINE MIR 91 162 -100 21 36 0 0 chr11 108939898 108939926 -39843546 + AT_rich Low_complexity Low_complexity 1 28 0 540 283 108 19 chr11 108939931 108940143 -39843329 - MIR SINE MIR -14 248 18 192 40 0 0 chr11 108940244 108940269 -39843203 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2250 111 0 10 chr11 108941665 108941971 -39841501 + AluSx SINE Alu 1 303 -9 395 330 123 6 chr11 108943070 108943267 -39840205 - MIR SINE MIR -6 256 39 198 286 0 16 chr11 108943746 108943809 -39839663 - L2 LINE L2 -1 3312 3251 21 0 0 0 chr11 108944219 108944240 -39839232 + AT_rich Low_complexity Low_complexity 1 21 0 2270 107 3 10 chr11 108944340 108944649 -39838823 - AluSp SINE Alu -6 307 1 2165 117 0 22 chr11 108944842 108945158 -39838314 - AluSx SINE Alu -3 309 1 216 158 0 0 chr11 108945341 108945379 -39838093 + CT-rich Low_complexity Low_complexity 2 39 0 1508 231 10 10 chr11 108945379 108945691 -39837781 - AluJo SINE Alu 0 312 1 801 246 41 9 chr11 108946723 108946943 -39836529 + MIR SINE MIR 2 228 -34 228 314 108 0 chr11 108946986 108947088 -39836384 + L2 LINE L2 3104 3216 -56 194 0 39 0 chr11 108947590 108947616 -39835856 + (TG)n Simple_repeat Simple_repeat 1 27 0 824 269 64 5 chr11 108948552 108948771 -39834701 - MIR SINE MIR -9 253 22 1853 164 145 19 chr11 108949491 108949905 -39833567 - MER31B LTR ERV1 0 466 1 504 211 18 0 chr11 108950136 108950245 -39833227 - MIR SINE MIR -21 241 131 1689 156 13 22 chr11 108950245 108950560 -39832912 - Tigger3(Golem) DNA MER2_type -2 3027 2716 702 202 0 0 chr11 108950615 108950734 -39832738 - MIR SINE MIR -131 131 13 285 29 0 0 chr11 108951077 108951111 -39832361 + (T)n Simple_repeat Simple_repeat 1 34 0 1532 100 12 25 chr11 108951129 108951369 -39832103 + L1PA10 LINE L1 5932 6168 0 2184 115 0 3 chr11 108951950 108952246 -39831226 - AluSx SINE Alu -17 295 1 218 179 0 107 chr11 108952358 108952414 -39831058 - L2 LINE L2 -2 3311 3262 393 321 26 36 chr11 108952513 108952706 -39830766 + MIR3 SINE MIR 5 195 -13 2283 81 3 14 chr11 108952971 108953267 -39830205 - AluSg SINE Alu -17 293 1 347 315 11 0 chr11 108953280 108953372 -39830100 - MER5A DNA MER1_type -93 96 4 2266 119 0 0 chr11 108954210 108954504 -39828968 - AluSx SINE Alu -18 294 1 279 336 34 42 chr11 108954517 108954636 -39828836 + L2 LINE L2 3149 3266 -6 180 0 0 0 chr11 108956241 108956261 -39827211 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2300 92 3 0 chr11 108957245 108957540 -39825932 + AluSp SINE Alu 1 296 -17 2213 104 3 19 chr11 108958062 108958369 -39825103 + AluSx SINE Alu 1 302 -10 1421 215 34 7 chr11 108959268 108959561 -39823911 + AluJo SINE Alu 1 301 -11 2382 89 7 0 chr11 108960532 108960836 -39822636 + AluSp SINE Alu 1 306 -7 231 292 0 0 chr11 108960839 108960928 -39822544 + L1MC4 LINE L1 6614 6702 -1340 231 167 0 0 chr11 108960930 108960972 -39822500 + (TA)n Simple_repeat Simple_repeat 1 42 0 2219 120 0 0 chr11 108961111 108961411 -39822061 + AluSx SINE Alu 1 300 -12 38 0 0 0 chr11 108961415 108961453 -39822019 + AT_rich Low_complexity Low_complexity 1 38 0 277 289 202 0 chr11 108961481 108961595 -39821877 - L2 LINE L2 -3 3310 3174 352 287 101 8 chr11 108961761 108961890 -39821582 - MER82 DNA MER2_type -6 647 507 582 316 21 11 chr11 108962886 108963076 -39820396 - L2 LINE L2 -1 3312 3121 246 274 69 69 chr11 108964321 108964504 -39818968 + MER5B DNA MER1_type 7 178 0 1912 149 0 0 chr11 108964521 108964822 -39818650 + AluJb SINE Alu 1 301 0 188 326 70 12 chr11 108965403 108965489 -39817983 - L2 LINE L2 -187 3085 2995 181 302 169 41 chr11 108965858 108966030 -39817442 - L2 LINE L2 -792 2522 2329 358 369 35 0 chr11 108966126 108966267 -39817205 + MIR SINE MIR 12 157 -105 203 88 29 0 chr11 108966496 108966530 -39816942 + (GA)n Simple_repeat Simple_repeat 2 36 0 425 261 60 80 chr11 108967255 108967454 -39816018 + MIR SINE MIR 11 205 -57 1513 155 94 55 chr11 108968203 108968364 -39815108 + THE1C LTR MaLR 1 154 -221 2386 78 0 3 chr11 108968364 108968659 -39814813 + AluY SINE Alu 2 295 -16 1513 155 94 55 chr11 108968659 108968858 -39814614 + THE1C LTR MaLR 154 375 0 21 0 0 0 chr11 108969586 108969607 -39813865 + AT_rich Low_complexity Low_complexity 1 21 0 2047 142 13 93 chr11 108970732 108971120 -39812352 - LTR18A LTR ERVL 0 357 1 195 321 116 18 chr11 108973552 108973664 -39809808 - L2 LINE L2 -1 3312 3190 276 281 128 43 chr11 108973831 108974112 -39809360 - HAL1 LINE L1 -169 2338 2034 2388 75 0 7 chr11 108974115 108974421 -39809051 - AluY SINE Alu -7 304 1 21 57 0 0 chr11 108974658 108974693 -39808779 + AT_rich Low_complexity Low_complexity 1 35 0 1884 138 76 0 chr11 108975157 108975276 -39808196 + AluJb SINE Alu 1 110 -202 201 74 0 0 chr11 108975276 108975303 -39808169 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1884 138 76 0 chr11 108975303 108975473 -39807999 + AluJb SINE Alu 110 312 0 386 158 24 49 chr11 108975821 108975903 -39807569 - MER5A DNA MER1_type -76 113 34 243 219 82 41 chr11 108975843 108975916 -39807556 + MER5A DNA MER1_type 105 180 -9 * 304 309 27 27 chr11 108976935 108977045 -39806427 - L2 LINE L2 -237 3035 2926 342 271 234 0 chr11 108977122 108977229 -39806243 + MIR SINE MIR 109 240 -22 13378 136 21 49 chr11 108977348 108978126 -39805346 + Tigger1 DNA MER2_type 1 799 -1619 2324 97 3 7 chr11 108978126 108978434 -39805038 - AluSg SINE Alu -3 307 1 13378 136 21 49 chr11 108978434 108980141 -39803331 + Tigger1 DNA MER2_type 799 2418 0 185 304 88 48 chr11 108981394 108981519 -39801953 - L2 LINE L2 -2054 1260 1131 1337 179 4 0 chr11 108982307 108982541 -39800931 - MER46A DNA MER2_type -1 235 1 212 163 0 0 chr11 108982961 108983004 -39800468 + T-rich Low_complexity Low_complexity 1 43 0 2112 119 16 26 chr11 108983784 108984095 -39799377 - AluSx SINE Alu -4 308 1 384 160 170 0 chr11 108984345 108984445 -39799027 - L2 LINE L2 -83 3230 3114 744 121 0 9 chr11 108984478 108984594 -39798878 + FLAM_C SINE Alu 19 133 -10 756 324 8 0 chr11 108984600 108984850 -39798622 - L2 LINE L2 -976 2338 2087 1237 191 76 69 chr11 108985369 108985657 -39797815 - AluJo SINE Alu -22 290 1 23 33 0 0 chr11 108985773 108985803 -39797669 + AT_rich Low_complexity Low_complexity 1 30 0 1571 125 121 21 chr11 108985899 108986179 -39797293 - AluJb SINE Alu -4 308 1 227 135 0 0 chr11 108986333 108986370 -39797102 + Charlie5 DNA MER1_type 2549 2585 -27 453 314 52 35 chr11 108986382 108986611 -39796861 - MIR SINE MIR -1 261 29 3874 139 18 5 chr11 108986825 108987452 -39796020 - MER41B LTR ERV1 0 635 1 24 0 0 0 chr11 108987959 108987983 -39795489 + AT_rich Low_complexity Low_complexity 1 24 0 1799 156 7 0 chr11 108988185 108988515 -39794957 - AluSq SINE Alu 0 332 1 2281 118 0 0 chr11 108988558 108988863 -39794609 - AluSq SINE Alu -8 305 1 317 173 58 93 chr11 108989721 108989763 -39793709 - L1MD1 LINE L1 0 6242 6200 2871 3 0 0 chr11 108989763 108990072 -39793400 - AluYb8 SINE Alu -9 309 1 317 173 58 93 chr11 108990072 108990168 -39793304 - L1MD1 LINE L1 -42 6200 6109 352 263 97 58 chr11 108990920 108991040 -39792432 + L1M4 LINE L1 4046 4160 -1986 1736 166 49 0 chr11 108991040 108991324 -39792148 + AluJb SINE Alu 1 298 -14 352 263 97 58 chr11 108991324 108991481 -39791991 + L1M4 LINE L1 4160 4334 -1812 319 285 46 0 chr11 108991482 108991612 -39791860 + L1M4 LINE L1 4374 4509 -1637 203 0 0 36 chr11 108992304 108992332 -39791140 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2012 131 0 0 chr11 108992341 108992623 -39790849 - AluSx SINE Alu -30 282 1 2078 137 17 0 chr11 108992867 108993167 -39790305 - AluSx SINE Alu -7 305 1 22 56 0 0 chr11 108993304 108993340 -39790132 + AT_rich Low_complexity Low_complexity 1 36 0 809 146 0 16 chr11 108993342 108993465 -39790007 - AluJb SINE Alu -188 124 4 1746 278 109 44 chr11 108993702 108994531 -39788941 - L2 LINE L2 0 3313 2378 873 222 69 0 chr11 108994531 108994734 -39788738 - MER20 DNA MER1_type -1 218 2 1746 278 109 44 chr11 108994734 108995012 -39788460 - L2 LINE L2 -935 2378 2120 1942 123 7 14 chr11 108995280 108995573 -39787899 + AluSg SINE Alu 1 291 -19 1347 92 0 32 chr11 108995574 108995759 -39787713 + AluSc SINE Alu 131 309 0 2403 135 54 10 chr11 108995839 108996247 -39787225 - MSTA LTR MaLR -2 426 1 206 305 152 48 chr11 108996289 108996558 -39786914 + L2 LINE L2 2968 3264 -49 4332 151 4 1 chr11 108997004 108997724 -39785748 - L1MB2 LINE L1 0 6171 5450 812 218 5 62 chr11 108998477 108998670 -39784802 - MER20 DNA MER1_type -2 217 36 493 284 175 9 chr11 108998977 108999188 -39784284 - MIR SINE MIR -1 261 16 279 0 0 0 chr11 109000124 109000155 -39783317 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 211 322 82 68 chr11 109000551 109000697 -39782775 - L2 LINE L2 -614 2700 2553 571 282 143 5 chr11 109000902 109001118 -39782354 + MIR SINE MIR 7 252 -10 210 37 0 0 chr11 109002312 109002339 -39781133 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 207 186 0 0 chr11 109002978 109003021 -39780451 + A-rich Low_complexity Low_complexity 1 43 0 181 275 150 50 chr11 109006229 109006349 -39777123 + L2 LINE L2 3141 3272 0 202 333 0 0 chr11 109007434 109007491 -39775981 + CT-rich Low_complexity Low_complexity 4 60 0 2079 130 20 0 chr11 109008370 109008670 -39774802 - AluSx SINE Alu -6 306 1 1011 172 0 0 chr11 109010045 109010219 -39773253 - FRAM SINE Alu -2 174 1 212 309 62 0 chr11 109010221 109010302 -39773170 - MIR SINE MIR -58 150 65 366 238 98 98 chr11 109010321 109010586 -39772886 - MLT1J LTR MaLR -18 493 229 957 154 0 6 chr11 109010586 109010742 -39772730 + FRAM SINE Alu 6 160 -16 380 288 163 0 chr11 109011819 109011979 -39771493 + MER5A DNA MER1_type 4 189 0 310 354 25 12 chr11 109012427 109012588 -39770884 + MIR SINE MIR 24 186 -76 506 331 16 5 chr11 109013690 109013874 -39769598 + MLT1L LTR MaLR 430 615 0 846 288 120 46 chr11 109014714 109015255 -39768217 - MLT1G LTR MaLR 0 590 10 27 0 0 0 chr11 109015271 109015298 -39768174 + AT_rich Low_complexity Low_complexity 1 27 0 499 293 66 59 chr11 109015406 109015662 -39767810 - MIR SINE MIR -2 260 3 181 319 0 14 chr11 109015675 109015747 -39767725 - L3 LINE CR1 -164 1413 1343 189 74 0 0 chr11 109016210 109016237 -39767235 + (T)n Simple_repeat Simple_repeat 1 27 0 22 35 0 0 chr11 109016306 109016335 -39767137 + AT_rich Low_complexity Low_complexity 1 29 0 455 258 32 32 chr11 109017439 109017563 -39765909 - MIR3 SINE MIR -21 187 64 234 116 0 0 chr11 109018069 109018112 -39765360 + (T)n Simple_repeat Simple_repeat 1 43 0 596 214 112 20 chr11 109018421 109018715 -39764757 - L1MC4 LINE L1 -1 8041 7691 320 285 54 77 chr11 109018780 109019040 -39764432 - MER41E LTR ERV1 -59 453 200 225 0 0 0 chr11 109019040 109019065 -39764407 + (T)n Simple_repeat Simple_repeat 1 25 0 225 0 0 0 chr11 109019294 109019319 -39764153 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 904 230 182 0 chr11 109019451 109019747 -39763725 - L1MC4 LINE L1 -452 7590 7241 1507 184 52 24 chr11 109019792 109020103 -39763369 + AluJb SINE Alu 1 312 0 25 0 0 0 chr11 109020668 109020693 -39762779 + AT_rich Low_complexity Low_complexity 1 25 0 732 166 40 26 chr11 109020998 109021149 -39762323 + 7SK RNA RNA 1 153 -40 346 153 17 0 chr11 109021166 109021225 -39762247 + 7SK RNA RNA 126 185 -8 331 311 112 50 chr11 109022930 109023352 -39760120 + L2 LINE L2 2766 3213 -100 2615 231 11 4 chr11 109024048 109024755 -39758717 + L1PB1 LINE L1 2849 3560 -2586 5814 171 15 2 chr11 109024759 109026455 -39757017 + L1PB1 LINE L1 4079 5791 -360 182 204 0 20 chr11 109026455 109026504 -39756968 + (TA)n Simple_repeat Simple_repeat 1 48 0 2495 109 11 3 chr11 109026511 109026877 -39756595 + L1PB1 LINE L1 5783 6151 0 349 353 55 78 chr11 109027909 109028255 -39755217 - L2 LINE L2 -10 3262 2925 2720 147 20 18 chr11 109028290 109028747 -39754725 - LTR32 LTR ERVL -5 466 9 1957 125 0 7 chr11 109029860 109030139 -39753333 - AluSx SINE Alu -1 311 35 811 139 7 42 chr11 109031628 109031772 -39751700 - Tigger3(Golem) DNA MER2_type -120 2909 2771 717 168 18 0 chr11 109031769 109031882 -39751590 - Tigger3(Golem) DNA MER2_type -2887 142 28 * 2340 112 0 0 chr11 109032237 109032549 -39750923 - AluSx SINE Alu 0 312 1 1793 197 67 0 chr11 109032694 109033055 -39750417 + Tigger3b DNA MER2_type 2 386 -845 449 228 0 0 chr11 109033059 109033138 -39750334 + Tigger3b DNA MER2_type 1153 1231 -1 234 224 90 0 chr11 109033155 109033222 -39750250 + MER63A DNA MER1_type 1 73 -137 514 252 48 0 chr11 109033248 109033395 -39750077 + MER63A DNA MER1_type 57 210 0 181 341 34 23 chr11 109035229 109035317 -39748155 + L2 LINE L2 2710 2798 -516 255 294 108 20 chr11 109035391 109035493 -39747979 - MIR SINE MIR -73 189 79 202 219 24 0 chr11 109038172 109038213 -39745259 - L2 LINE L2 -16 3256 3215 24 67 0 0 chr11 109038215 109038260 -39745212 + AT_rich Low_complexity Low_complexity 1 45 0 247 322 43 0 chr11 109039053 109039168 -39744304 + L2 LINE L2 2428 2547 -767 210 296 0 37 chr11 109039261 109039342 -39744130 + MIR SINE MIR 185 262 0 342 0 0 0 chr11 109039454 109039492 -39743980 + (TG)n Simple_repeat Simple_repeat 2 39 0 342 219 0 0 chr11 109039951 109040024 -39743448 - L1MC4 LINE L1 -4 8038 7966 23 54 0 0 chr11 109041345 109041382 -39742090 + AT_rich Low_complexity Low_complexity 1 37 0 613 340 131 55 chr11 109042243 109043442 -39740030 - L2 LINE L2 -1 3271 1993 297 250 128 55 chr11 109043493 109043657 -39739815 - MIR SINE MIR -70 192 17 2182 95 3 40 chr11 109044116 109044427 -39739045 + AluSp SINE Alu 1 301 -12 207 0 0 0 chr11 109044427 109044450 -39739022 + (CA)n Simple_repeat Simple_repeat 2 24 0 2182 95 3 40 chr11 109044450 109044463 -39739009 + AluSp SINE Alu 301 313 0 304 50 0 0 chr11 109045310 109045350 -39738122 - MADE1 DNA Mariner -37 43 4 2253 95 10 0 chr11 109045555 109045849 -39737623 - AluSx SINE Alu -15 297 1 569 193 78 18 chr11 109046767 109046933 -39736539 + L1 LINE L1 4278 4453 -1693 4619 148 68 12 chr11 109046943 109047829 -39735643 - Tigger1 DNA MER2_type -8 2410 1475 1772 132 167 16 chr11 109047829 109048201 -39735271 - MSTA LTR MaLR 0 428 1 7884 156 33 6 chr11 109048202 109049643 -39733829 - Tigger1 DNA MER2_type -936 1482 2 621 299 48 0 chr11 109049769 109049936 -39733536 - MIR SINE MIR -36 226 52 470 322 55 5 chr11 109050098 109050297 -39733175 + MIR SINE MIR 54 262 0 234 65 0 0 chr11 109050957 109050988 -39732484 + Alu SINE Alu 165 195 -105 21 0 0 0 chr11 109052573 109052594 -39730878 + AT_rich Low_complexity Low_complexity 1 21 0 2203 125 3 3 chr11 109052631 109052943 -39730529 + AluSx SINE Alu 1 312 0 207 284 75 75 chr11 109053091 109053114 -39730358 - L3 LINE CR1 -366 1211 1189 2242 108 3 0 chr11 109053114 109053410 -39730062 - AluSp SINE Alu -16 297 1 207 284 75 75 chr11 109053410 109053520 -39729952 - L3 LINE CR1 -387 1190 1078 183 42 0 0 chr11 109053751 109053775 -39729697 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1872 124 12 0 chr11 109053777 109054035 -39729437 - AluSx SINE Alu -26 286 26 193 236 42 14 chr11 109054108 109054180 -39729292 - L3 LINE CR1 -858 719 646 190 363 105 40 chr11 109054204 109054328 -39729144 - L2 LINE L2 -32 3240 3109 291 316 139 34 chr11 109054632 109054841 -39728631 + MER112 DNA MER1_type 15 245 -15 997 233 9 22 chr11 109055017 109055249 -39728223 - MIR SINE MIR -31 231 3 1291 204 179 13 chr11 109055376 109055768 -39727704 - MSTB2 LTR MaLR 0 457 1 233 194 292 14 chr11 109056403 109056441 -39727031 + MER58B DNA MER1_type 1 27 -188 315 0 0 0 chr11 109056441 109056476 -39726996 + (TC)n Simple_repeat Simple_repeat 2 36 0 * 414 0 0 0 chr11 109056475 109056521 -39726951 + (TG)n Simple_repeat Simple_repeat 1 46 0 233 194 292 14 chr11 109056476 109056554 -39726918 + MER58B DNA MER1_type 27 92 -123 242 188 31 0 chr11 109056555 109056619 -39726853 + T-rich Low_complexity Low_complexity 1 66 0 189 121 0 0 chr11 109056730 109056763 -39726709 + (CTGGGG)n Simple_repeat Simple_repeat 1 33 0 811 276 9 4 chr11 109057185 109057413 -39726059 + MER58B DNA MER1_type 112 340 -1 212 416 0 0 chr11 109058976 109059065 -39724407 + MIR SINE MIR 20 108 -154 2339 100 0 0 chr11 109059096 109059395 -39724077 + AluSg SINE Alu 5 303 -7 1310 109 0 5 chr11 109059494 109059678 -39723794 - AluSp SINE Alu -11 302 120 28 0 0 0 chr11 109060412 109060440 -39723032 + AT_rich Low_complexity Low_complexity 1 28 0 509 248 201 7 chr11 109060448 109060597 -39722875 + MER5A DNA MER1_type 12 189 0 203 318 112 28 chr11 109061339 109061446 -39722026 + L2 LINE L2 3111 3226 -46 8160 183 25 6 chr11 109061473 109063187 -39720285 - L1PB1 LINE L1 0 6151 4360 281 24 49 0 chr11 109063187 109063228 -39720244 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 8160 183 25 6 chr11 109063228 109064459 -39719013 - L1PB1 LINE L1 -1791 4360 3153 219 330 107 19 chr11 109064567 109064670 -39718802 + L2 LINE L2 3111 3222 -50 2160 128 0 6 chr11 109064697 109065010 -39718462 - AluSq SINE Alu -2 311 1 189 74 0 0 chr11 109065670 109065697 -39717775 + (TTG)n Simple_repeat Simple_repeat 1 27 0 180 397 40 16 chr11 109066391 109066517 -39716955 - MIR SINE MIR -114 148 20 21 36 0 0 chr11 109066975 109067003 -39716469 + AT_rich Low_complexity Low_complexity 1 28 0 226 278 130 28 chr11 109067713 109067821 -39715651 + L3 LINE CR1 1454 1572 -5 209 241 120 120 chr11 109068567 109068675 -39714797 - L2 LINE L2 -20 3252 3145 572 304 32 46 chr11 109068997 109069342 -39714130 + LTR16A LTR ERVL 3 342 -108 181 254 0 51 chr11 109070456 109070515 -39712957 + L2 LINE L2 3216 3271 -1 1128 222 51 75 chr11 109070581 109070955 -39712517 + MLT1A1 LTR MaLR 1 365 0 460 310 97 32 chr11 109071757 109071973 -39711499 - MIR SINE MIR -17 245 16 2342 112 0 3 chr11 109072807 109073110 -39710362 - AluSx SINE Alu -10 302 1 466 212 71 0 chr11 109074237 109074336 -39709136 - L3b LINE CR1 -196 1387 1282 270 0 0 0 chr11 109074526 109074556 -39708916 + (TG)n Simple_repeat Simple_repeat 2 31 0 22 35 0 0 chr11 109074985 109075014 -39708458 + AT_rich Low_complexity Low_complexity 1 29 0 195 322 110 25 chr11 109076446 109076564 -39706908 - MIR3 SINE MIR -42 166 39 243 0 0 0 chr11 109076588 109076615 -39706857 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 259 175 0 0 chr11 109076665 109076705 -39706767 - MER20 DNA MER1_type -1 218 179 180 0 0 0 chr11 109076861 109076881 -39706591 + (T)n Simple_repeat Simple_repeat 1 20 0 321 227 82 18 chr11 109077069 109077179 -39706293 - MLT1J LTR MaLR -357 154 38 180 176 0 0 chr11 109077195 109077210 -39706262 + T-rich Low_complexity Low_complexity 1 15 -36 23309 65 1 1 chr11 109077210 109081065 -39702407 - L1PA6 LINE L1 -2 6152 2297 180 176 0 0 chr11 109081065 109081100 -39702372 + T-rich Low_complexity Low_complexity 14 51 0 13116 141 19 16 chr11 109081100 109083407 -39700065 - L1PA6 LINE L1 -3821 2325 11 459 0 0 0 chr11 109084485 109084536 -39698936 + (CA)n Simple_repeat Simple_repeat 1 51 0 26 30 0 0 chr11 109084596 109084629 -39698843 + AT_rich Low_complexity Low_complexity 1 33 0 3006 77 34 29 chr11 109085031 109085089 -39698383 - MLT2A1 LTR ERVL 0 444 388 435 38 0 0 chr11 109085089 109085142 -39698330 + (TA)n Simple_repeat Simple_repeat 2 54 0 3006 77 34 29 chr11 109085142 109085525 -39697947 - MLT2A1 LTR ERVL -56 388 1 2385 100 0 10 chr11 109085614 109085924 -39697548 - AluSx SINE Alu -3 309 3 256 244 23 35 chr11 109085925 109086011 -39697461 + CT-rich Low_complexity Low_complexity 1 85 0 343 309 43 31 chr11 109086103 109086265 -39697207 + MIR SINE MIR 20 183 -79 185 273 15 45 chr11 109086320 109086386 -39697086 + L2 LINE L2 3209 3272 0 230 259 143 0 chr11 109086562 109086674 -39696798 + HAL1 LINE L1 2270 2397 -110 1403 289 72 37 chr11 109086770 109087074 -39696398 - HAL1 LINE L1 -228 2279 1987 1540 181 4 4 chr11 109087074 109087340 -39696132 + AluSx SINE Alu 1 266 -46 1403 289 72 37 chr11 109087340 109088056 -39695416 - HAL1 LINE L1 -520 1987 1223 426 290 61 25 chr11 109088327 109088738 -39694734 - L1ME LINE L1 -460 5702 5269 4565 153 38 17 chr11 109089693 109090713 -39692759 - L1PB4 LINE L1 -61 6095 5042 2131 106 40 3 chr11 109090713 109091014 -39692458 - AluSq SINE Alu -1 312 1 4565 153 38 17 chr11 109091014 109091232 -39692240 - L1PB4 LINE L1 -1114 5042 4830 1937 154 0 0 chr11 109095306 109095610 -39687862 - AluSx SINE Alu 0 308 5 261 0 0 0 chr11 109095889 109095918 -39687554 + (CAA)n Simple_repeat Simple_repeat 2 30 0 26 30 0 0 chr11 109096444 109096477 -39686995 + AT_rich Low_complexity Low_complexity 1 33 0 232 366 45 9 chr11 109096882 109096994 -39686478 - L3b LINE CR1 -68 1515 1400 328 338 88 4 chr11 109097642 109097870 -39685602 + L1ME4a LINE L1 5122 5368 -778 663 246 83 56 chr11 109097947 109098390 -39685082 + L1ME4a LINE L1 5480 5934 -187 333 0 0 0 chr11 109098395 109098432 -39685040 + (TG)n Simple_repeat Simple_repeat 2 38 0 1971 152 10 0 chr11 109098951 109099248 -39684224 - AluSx SINE Alu -12 300 1 2888 170 56 4 chr11 109100310 109100844 -39682628 - MER68 LTR ERV1 0 562 1 775 158 0 65 chr11 109100942 109101081 -39682391 - FLAM_C SINE Alu -3 130 1 588 267 91 5 chr11 109101176 109101363 -39682109 - MER63A DNA MER1_type 0 210 8 725 224 8 0 chr11 109101668 109101802 -39681670 - Tigger2 DNA MER2_type -10 2708 2574 375 23 0 0 chr11 109102582 109102626 -39680846 + (TA)n Simple_repeat Simple_repeat 2 45 0 243 0 0 0 chr11 109102626 109102653 -39680819 + (T)n Simple_repeat Simple_repeat 1 27 0 183 100 0 0 chr11 109102681 109102711 -39680761 + (TG)n Simple_repeat Simple_repeat 2 31 0 1494 172 16 83 chr11 109103098 109103471 -39680001 + L1MC2 LINE L1 5988 6335 -9 2069 124 0 0 chr11 109105756 109106071 -39677401 + AluSx SINE Alu 1 315 0 2197 122 0 13 chr11 109106191 109106503 -39676969 - AluSx SINE Alu -4 308 1 642 196 68 79 chr11 109106635 109106827 -39676645 + MER33 DNA MER1_type 60 250 -2335 2143 130 0 0 chr11 109106827 109107126 -39676346 + AluSx SINE Alu 1 299 -13 642 196 68 79 chr11 109107126 109107198 -39676274 + MER33 DNA MER1_type 250 321 -3 399 250 217 17 chr11 109107556 109107736 -39675736 - MIR SINE MIR -7 255 40 328 298 88 28 chr11 109107946 109108127 -39675345 + MIR SINE MIR 56 247 -15 3344 210 56 18 chr11 109109666 109109684 -39673788 - L1MB7 LINE L1 0 6184 6168 1751 180 35 0 chr11 109109684 109109973 -39673499 + AluJb SINE Alu 1 299 -13 3344 210 56 18 chr11 109109973 109110429 -39673043 - L1MB7 LINE L1 -16 6168 5731 1756 152 55 36 chr11 109110429 109110759 -39672713 - MER1B DNA MER1_type 0 337 2 3344 210 56 18 chr11 109110759 109111277 -39672195 - L1MB7 LINE L1 -453 5731 5150 1533 181 36 18 chr11 109112292 109112623 -39670849 - MER46B DNA MER2_type -10 226 15 23 0 0 0 chr11 109114769 109114792 -39668680 + AT_rich Low_complexity Low_complexity 1 23 0 1367 142 54 0 chr11 109114859 109115120 -39668352 + L1MA9 LINE L1 6037 6311 -1 2195 96 14 0 chr11 109115160 109115451 -39668021 - AluSp SINE Alu -18 295 1 558 183 0 10 chr11 109115639 109115743 -39667729 + U13 snRNA snRNA 1 103 -1 33 43 0 0 chr11 109115746 109115793 -39667679 + AT_rich Low_complexity Low_complexity 1 47 0 198 0 0 0 chr11 109117022 109117044 -39666428 + (CA)n Simple_repeat Simple_repeat 1 22 0 1398 170 112 4 chr11 109117222 109117499 -39665973 + AluJb SINE Alu 1 307 -5 22 0 0 0 chr11 109118775 109118797 -39664675 + AT_rich Low_complexity Low_complexity 1 22 0 572 223 27 18 chr11 109119852 109120028 -39663444 - L1MA10 LINE L1 -2 6332 5991 220 324 135 18 chr11 109120522 109120692 -39662780 + MIR SINE MIR 20 209 -53 1193 312 37 19 chr11 109122140 109122811 -39660661 - L2 LINE L2 -2 3311 2630 230 348 88 7 chr11 109122823 109122992 -39660480 - MIR SINE MIR -67 141 11 272 266 78 31 chr11 109123911 109124039 -39659433 - MIR3 SINE MIR -9 199 66 530 78 13 0 chr11 109124497 109124574 -39658898 + MADE1 DNA Mariner 1 78 -2 14257 143 20 8 chr11 109125925 109128314 -39655158 - Tigger1 DNA MER2_type 0 2418 1 461 308 27 49 chr11 109128498 109128722 -39654750 - L1 LINE L1 -1700 4446 4228 611 264 51 6 chr11 109128755 109128933 -39654539 + MIR SINE MIR 71 256 -6 32 0 0 0 chr11 109129069 109129101 -39654371 + AT_rich Low_complexity Low_complexity 1 32 0 220 316 26 0 chr11 109130174 109130250 -39653222 - L2 LINE L2 -6 3266 3189 720 229 186 11 chr11 109130563 109130838 -39652634 + MER5C DNA MER1_type 2 324 0 255 79 0 0 chr11 109131660 109131698 -39651774 + (A)n Simple_repeat Simple_repeat 1 38 0 23 0 0 0 chr11 109131715 109131738 -39651734 + AT_rich Low_complexity Low_complexity 1 23 0 2416 87 7 0 chr11 109131738 109132048 -39651424 - AluSx SINE Alu 0 312 1 249 298 65 32 chr11 109132220 109132344 -39651128 + MIR SINE MIR 26 153 -109 210 320 62 16 chr11 109133353 109133481 -39649991 - L2 LINE L2 -1323 1991 1858 428 314 7 15 chr11 109133492 109133629 -39649843 + MER5A DNA MER1_type 54 189 0 272 240 70 0 chr11 109134162 109134262 -39649210 - L1ME4a LINE L1 -44 6077 5971 1076 185 97 13 chr11 109134271 109134569 -39648903 - Charlie1 DNA MER1_type 0 2761 2439 278 261 87 0 chr11 109134727 109134796 -39648676 + L2 LINE L2 3198 3272 0 1490 181 82 14 chr11 109135034 109135326 -39648146 + AluJb SINE Alu 1 312 0 608 299 132 45 chr11 109137293 109137872 -39645600 - L2 LINE L2 -103 3169 2537 334 311 37 30 chr11 109137991 109138155 -39645317 + Charlie8 DNA MER1_type 107 271 -2146 533 229 177 0 chr11 109138413 109138605 -39644867 + L1ME3A LINE L1 5944 6169 -1 235 219 0 0 chr11 109138928 109138969 -39644503 + Alu SINE Alu 146 186 -116 405 0 0 0 chr11 109138985 109139030 -39644442 + (TAAA)n Simple_repeat Simple_repeat 2 46 0 2234 86 0 0 chr11 109139030 109139308 -39644164 + AluSc SINE Alu 1 278 -31 24 53 0 0 chr11 109139566 109139604 -39643868 + AT_rich Low_complexity Low_complexity 1 38 0 1274 163 0 0 chr11 109139604 109139807 -39643665 - MER2 DNA MER2_type -140 205 3 279 73 24 0 chr11 109140642 109140683 -39642789 - MER58 DNA MER1_type -6 2414 2373 663 149 51 82 chr11 109145871 109146066 -39637406 + L1MC3 LINE L1 6902 7090 -695 311 267 12 23 chr11 109146084 109146170 -39637302 + MLT1F1 LTR MaLR 41 125 -442 1892 193 22 22 chr11 109146180 109146545 -39636927 + L1MD3 LINE L1 7418 7786 -209 2180 79 7 4 chr11 109146545 109146872 -39636600 + AluSq SINE Alu 4 331 0 1892 193 22 22 chr11 109146872 109146919 -39636553 + L1MD3 LINE L1 7785 7831 -164 2198 81 50 3 chr11 109148175 109148473 -39634999 - AluSx SINE Alu 0 312 1 222 224 104 15 chr11 109148516 109148583 -39634889 - MIR3 SINE MIR -21 187 115 350 360 0 43 chr11 109149125 109149264 -39634208 - MIR3 SINE MIR -67 141 9 233 260 62 42 chr11 109149270 109149366 -39634106 + L3 LINE CR1 1058 1155 -422 257 247 284 0 chr11 109149454 109149535 -39633937 + MER5A DNA MER1_type 84 187 -2 238 329 178 0 chr11 109149618 109149770 -39633702 + L3 LINE CR1 1306 1484 -93 249 390 63 0 chr11 109150278 109150373 -39633099 - L2 LINE L2 -39 3233 3133 717 124 129 67 chr11 109150421 109150614 -39632858 + L1MA4 LINE L1 6087 6291 -9 799 258 21 0 chr11 109152233 109152419 -39631053 + MIR SINE MIR 18 207 -55 691 194 16 0 chr11 109152419 109152548 -39630924 - MLT1D LTR MaLR 0 505 375 506 270 63 16 chr11 109152835 109153024 -39630448 - MLT1D LTR MaLR -126 379 182 2212 235 11 2 chr11 109153025 109153545 -39629927 - MLT1D-int LTR MaLR -846 525 1 1994 196 123 7 chr11 109153545 109153993 -39629479 - MLT1D LTR MaLR 0 505 6 338 162 20 74 chr11 109154094 109154216 -39629256 - LTR50 LTR ERVL 0 795 660 252 167 0 0 chr11 109154216 109154264 -39629208 + (TA)n Simple_repeat Simple_repeat 1 48 0 1984 149 0 0 chr11 109154264 109154552 -39628920 - AluSx SINE Alu -24 288 1 291 245 29 72 chr11 109154558 109154697 -39628775 - LTR41 LTR ERVL -106 667 535 574 236 7 27 chr11 109154845 109154993 -39628479 - LTR41 LTR ERVL -628 145 1 24 0 0 0 chr11 109155283 109155307 -39628165 + AT_rich Low_complexity Low_complexity 1 24 0 26 50 0 0 chr11 109155410 109155450 -39628022 + AT_rich Low_complexity Low_complexity 1 40 0 1191 162 87 8 chr11 109155481 109155722 -39627750 + L1MC3 LINE L1 7185 7444 -341 909 138 0 0 chr11 109155725 109155870 -39627602 + L1MC3 LINE L1 7487 7631 -154 2087 122 0 7 chr11 109155875 109156163 -39627309 + AluSx SINE Alu 14 299 -13 23 0 0 0 chr11 109156234 109156257 -39627215 + AT_rich Low_complexity Low_complexity 1 23 0 264 170 20 50 chr11 109156472 109156572 -39626900 + (TTTAA)n Simple_repeat Simple_repeat 5 101 0 365 318 133 13 chr11 109156834 109157067 -39626405 + L1MC/D LINE L1 5255 5515 -2293 27 29 0 0 chr11 109157103 109157137 -39626335 + AT_rich Low_complexity Low_complexity 1 34 0 220 257 27 0 chr11 109157209 109157283 -39626189 + (TA)n Simple_repeat Simple_repeat 1 76 0 1443 217 43 0 chr11 109157283 109157582 -39625890 - AluJo SINE Alu 0 312 1 21 57 0 0 chr11 109157734 109157769 -39625703 + AT_rich Low_complexity Low_complexity 1 35 0 198 71 0 0 chr11 109157855 109157883 -39625589 + (TG)n Simple_repeat Simple_repeat 2 29 0 344 352 22 16 chr11 109158277 109158470 -39625002 - MIR SINE MIR -56 206 12 257 265 36 0 chr11 109158470 109158553 -39624919 + MER113 DNA MER1_type? 1 86 -435 776 259 153 37 chr11 109158956 109159339 -39624133 + MLT1H1 LTR MaLR 75 501 -54 1527 94 0 24 chr11 109159339 109159551 -39623921 + AluSq SINE Alu 91 297 -16 776 259 153 37 chr11 109159551 109159614 -39623858 + MLT1H1 LTR MaLR 501 555 0 713 284 156 46 chr11 109159672 109160088 -39623384 + MLT1J LTR MaLR 1 462 -49 243 222 111 14 chr11 109160542 109160614 -39622858 + MLT1L LTR MaLR 19 97 -518 253 311 19 19 chr11 109161639 109161745 -39621727 - MIR SINE MIR -86 122 17 190 241 190 0 chr11 109162092 109162150 -39621322 + MIR SINE MIR 117 185 -77 688 300 67 13 chr11 109162258 109162571 -39620901 - MER102a DNA MER1_type 0 330 1 195 225 99 0 chr11 109163773 109163844 -39619628 + MIR SINE MIR 120 197 -65 197 311 148 37 chr11 109164552 109164687 -39618785 + MIR SINE MIR 60 209 -53 6795 60 7 6 chr11 109164746 109165631 -39617841 - L1PA8 LINE L1 -7 6165 5280 4370 107 11 0 chr11 109165932 109166560 -39616912 + MER41B LTR ERV1 1 635 0 219 179 0 0 chr11 109169307 109169346 -39614126 + MIR SINE MIR 224 262 0 258 220 9 138 chr11 109170204 109170313 -39613159 + MER21B LTR ERV1 12 106 -757 * 2010 245 125 37 chr11 109170311 109171033 -39612439 + MER21B LTR ERV1 19 803 -60 233 333 0 0 chr11 109171124 109171196 -39612276 + MER21B LTR ERV1 307 378 -485 245 282 64 0 chr11 109171245 109171323 -39612149 + MIR3 SINE MIR 85 167 -41 255 273 0 0 chr11 109171476 109171531 -39611941 + MIR3 SINE MIR 151 205 -3 192 40 0 0 chr11 109171590 109171615 -39611857 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 1254 218 55 11 chr11 109172169 109172440 -39611032 - AluJb SINE Alu -29 283 1 253 327 32 51 chr11 109173102 109173258 -39610214 - MIR3 SINE MIR -35 173 21 2597 23 3 10 chr11 109175311 109175612 -39607860 + AluY SINE Alu 1 299 -12 1234 57 6 0 chr11 109175942 109176100 -39607372 + L1PA7 LINE L1 5994 6152 -2 22 0 0 0 chr11 109176649 109176671 -39606801 + AT_rich Low_complexity Low_complexity 1 22 0 1924 136 0 18 chr11 109176677 109176963 -39606509 - AluSx SINE Alu -30 282 2 196 358 73 15 chr11 109176974 109177111 -39606361 + MIR SINE MIR 100 244 -18 241 242 0 32 chr11 109177271 109177333 -39606139 - HsTC2 DNA Tc2 -608 1290 1231 2031 101 0 0 chr11 109177723 109177990 -39605482 - AluSq SINE Alu -46 267 1 29 47 0 0 chr11 109178401 109178444 -39605028 + AT_rich Low_complexity Low_complexity 1 43 0 2331 97 0 3 chr11 109178449 109178747 -39604725 + AluSc SINE Alu 1 297 -12 909 243 59 5 chr11 109178822 109179044 -39604428 - MIR SINE MIR -21 241 8 971 240 97 23 chr11 109179853 109180260 -39603212 + MER41B LTR ERV1 150 468 -10 1190 115 58 7 chr11 109182835 109183039 -39600433 - PABL_A-int LTR ERV1 -594 4421 3961 279 345 102 45 chr11 109183450 109184080 -39599392 + L2 LINE L2 2592 3257 -15 289 267 26 35 chr11 109187209 109187325 -39596147 - MIR SINE MIR -147 115 1 208 281 74 74 chr11 109188511 109188632 -39594840 + L2 LINE L2 3147 3267 -5 234 348 56 50 chr11 109189063 109189224 -39594248 - L2 LINE L2 -110 3162 3001 282 252 109 34 chr11 109190631 109190778 -39592694 - L1ME4a LINE L1 -17 6104 5947 359 171 24 181 chr11 109190891 109191096 -39592376 - HAL1 LINE L1 0 2507 2335 2598 247 132 28 chr11 109191280 109192449 -39591023 - HAL1 LINE L1 -416 2091 802 371 263 117 29 chr11 109192619 109192790 -39590682 - L1ME4a LINE L1 -412 5709 5524 324 316 75 16 chr11 109193695 109193882 -39589590 - L1ME4a LINE L1 -1665 4481 4284 12739 124 22 22 chr11 109193884 109195892 -39587580 - Tigger1 DNA MER2_type 0 2418 410 1872 168 3 0 chr11 109195892 109196195 -39587277 - AluSx SINE Alu -8 304 1 12739 124 22 22 chr11 109196195 109196238 -39587234 - Tigger1 DNA MER2_type -2008 410 368 3265 156 31 5 chr11 109196506 109196854 -39586618 - L1PB4 LINE L1 -7 6149 5778 402 74 0 0 chr11 109196854 109196908 -39586564 + (TG)n Simple_repeat Simple_repeat 1 54 0 3265 156 31 5 chr11 109196908 109197143 -39586329 - L1PB4 LINE L1 -378 5778 5551 215 0 67 0 chr11 109197297 109197327 -39586145 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1300 184 13 87 chr11 109197330 109197639 -39585833 - AluJb SINE Alu -26 286 1 453 228 195 8 chr11 109199121 109199244 -39584228 + MLT1J2 LTR MaLR 37 182 -268 3431 127 59 0 chr11 109199540 109200098 -39583374 - Tigger3b DNA MER2_type 0 1231 641 779 176 7 7 chr11 109200098 109200234 -39583238 - FLAM_A SINE Alu -6 136 1 3433 141 45 5 chr11 109200234 109200836 -39582636 - Tigger3b DNA MER2_type -605 626 1 260 312 40 32 chr11 109201940 109202065 -39581407 + MIR SINE MIR 91 216 -46 35 71 0 0 chr11 109202178 109202248 -39581224 + AT_rich Low_complexity Low_complexity 1 70 0 255 341 196 22 chr11 109203017 109203246 -39580226 - L2 LINE L2 0 3272 3004 369 0 0 0 chr11 109203461 109203502 -39579970 + (TG)n Simple_repeat Simple_repeat 2 42 0 435 346 122 32 chr11 109203754 109204254 -39579218 - L2 LINE L2 -579 2735 2191 518 245 6 22 chr11 109204671 109205014 -39578458 + CT-rich Low_complexity Low_complexity 1 337 0 396 313 55 16 chr11 109205821 109206003 -39577469 + MIR SINE MIR 30 218 -44 21 71 0 0 chr11 109206271 109206313 -39577159 + AT_rich Low_complexity Low_complexity 1 42 0 2344 97 0 10 chr11 109206314 109206625 -39576847 + AluSc SINE Alu 1 308 -1 25 31 0 0 chr11 109206747 109206779 -39576693 + AT_rich Low_complexity Low_complexity 1 32 0 182 103 0 51 chr11 109206949 109206988 -39576484 + (TTTTTG)n Simple_repeat Simple_repeat 1 37 0 1549 152 46 46 chr11 109207539 109207842 -39575630 + AluJo SINE Alu 1 303 -9 434 336 92 74 chr11 109208166 109208613 -39574859 - L2 LINE L2 -9 3263 2809 507 322 154 50 chr11 109208646 109209462 -39574010 - L2 LINE L2 -568 2746 1846 260 401 50 50 chr11 109210301 109210560 -39572912 + L2 LINE L2 2941 3199 -73 1757 168 0 29 chr11 109210737 109211052 -39572420 + AluJb SINE Alu 5 310 -2 240 35 0 0 chr11 109211361 109211390 -39572082 + (TG)n Simple_repeat Simple_repeat 2 30 0 22 35 0 0 chr11 109214073 109214102 -39569370 + AT_rich Low_complexity Low_complexity 1 29 0 252 283 53 35 chr11 109214251 109214364 -39569108 + L3 LINE CR1 901 1015 -562 241 352 131 0 chr11 109214538 109214714 -39568758 + L3 LINE CR1 1011 1209 -368 257 329 0 0 chr11 109214882 109214955 -39568517 + Charlie8 DNA MER1_type 1 73 -2344 267 313 12 0 chr11 109214991 109215071 -39568401 + Charlie8 DNA MER1_type 185 265 -2152 193 257 0 95 chr11 109215152 109215226 -39568246 + L3 LINE CR1 1247 1313 -264 2311 115 0 3 chr11 109215229 109215543 -39567929 + AluSq SINE Alu 1 313 0 742 184 0 14 chr11 109216148 109216289 -39567183 - FLAM_C SINE Alu -4 139 1 45 19 0 0 chr11 109216477 109216529 -39566943 + AT_rich Low_complexity Low_complexity 1 52 0 27 49 0 0 chr11 109217349 109217390 -39566082 + AT_rich Low_complexity Low_complexity 1 41 0 1627 106 4 30 chr11 109218008 109218245 -39565227 - AluSg/x SINE Alu -10 300 70 184 189 19 38 chr11 109219580 109219633 -39563839 - L2 LINE L2 0 3313 3262 21 0 0 0 chr11 109220180 109220201 -39563271 + AT_rich Low_complexity Low_complexity 1 21 0 206 265 0 0 chr11 109220890 109220939 -39562533 - L2 LINE L2 -6 3266 3218 1186 294 31 0 chr11 109221598 109221921 -39561551 - MLT1I LTR MaLR -6 403 71 699 230 58 26 chr11 109222329 109222520 -39560952 - MIR SINE MIR -1 261 65 277 288 29 104 chr11 109222691 109222887 -39560585 - MIR SINE MIR -61 147 1 201 195 0 0 chr11 109223832 109223873 -39559599 + (CATA)n Simple_repeat Simple_repeat 4 44 0 22 56 0 0 chr11 109224233 109224269 -39559203 + AT_rich Low_complexity Low_complexity 1 36 0 190 321 57 0 chr11 109224682 109224735 -39558737 + MIR SINE MIR 21 76 -186 226 336 69 26 chr11 109225760 109225876 -39557596 + MIR SINE MIR 28 148 -114 959 225 37 9 chr11 109226543 109226761 -39556711 + MIR SINE MIR 19 242 -20 2380 73 3 7 chr11 109227913 109228215 -39555257 + AluSp SINE Alu 1 301 -12 241 356 21 69 chr11 109228994 109229182 -39554290 - MIR3 SINE MIR -11 197 19 23 92 0 0 chr11 109229309 109229374 -39554098 + AT_rich Low_complexity Low_complexity 1 65 0 2251 101 46 14 chr11 109230242 109230590 -39552882 - THE1C LTR MaLR -16 359 1 305 279 65 21 chr11 109230730 109230845 -39552627 + MIR SINE MIR 5 124 -84 263 282 18 0 chr11 109231142 109231252 -39552220 + Charlie2 DNA MER1_type 2597 2708 -154 485 154 56 63 chr11 109231297 109231440 -39552032 + Charlie2 DNA MER1_type 2721 2862 0 2083 151 32 74 chr11 109231599 109232031 -39551441 - MLT2D LTR ERVL 0 414 1 27 62 0 0 chr11 109232635 109232683 -39550789 + AT_rich Low_complexity Low_complexity 1 48 0 1431 242 40 43 chr11 109232957 109233038 -39550434 - L1M4b LINE L1 -3655 3302 3222 2114 99 0 33 chr11 109233038 109233340 -39550132 - AluSc SINE Alu -17 292 1 1431 242 40 43 chr11 109233340 109234053 -39549419 - L1M4b LINE L1 -3735 3222 2473 21 57 0 0 chr11 109234133 109234168 -39549304 + AT_rich Low_complexity Low_complexity 1 35 0 2808 239 99 41 chr11 109234272 109235311 -39548161 - L1M4b LINE L1 -4588 2371 1394 2051 126 3 3 chr11 109235311 109235604 -39547868 - AluSx SINE Alu -17 295 3 2808 239 99 41 chr11 109235604 109236637 -39546835 - L1M4b LINE L1 -5565 1394 2 439 346 37 0 chr11 109237088 109237250 -39546222 - MIR SINE MIR -61 201 34 324 0 0 0 chr11 109237834 109237870 -39545602 + (TGGA)n Simple_repeat Simple_repeat 1 36 0 193 311 27 14 chr11 109237924 109237998 -39545474 + MIR SINE MIR 18 92 -116 1104 148 6 0 chr11 109240506 109240689 -39542783 + L1MA1 LINE L1 6119 6302 0 207 316 43 50 chr11 109242952 109243091 -39540381 - MIR SINE MIR -8 254 117 1853 305 120 29 chr11 109244992 109246155 -39537317 + L2 LINE L2 1799 3063 -250 343 258 119 41 chr11 109246165 109246710 -39536762 + L1ME3A LINE L1 5282 5877 -293 22 35 0 0 chr11 109247015 109247044 -39536428 + AT_rich Low_complexity Low_complexity 1 29 0 7126 106 21 1 chr11 109247055 109248894 -39534578 + L1PA7 LINE L1 4292 6153 -1 29812 111 10 57 chr11 109248914 109255354 -39528118 + L1PA7 LINE L1 12 6147 -7 27 0 0 0 chr11 109255358 109255385 -39528087 + AT_rich Low_complexity Low_complexity 1 27 0 234 0 0 0 chr11 109255802 109255828 -39527644 + (T)n Simple_repeat Simple_repeat 1 26 0 2971 149 34 4 chr11 109257780 109258724 -39524748 + L1M1 LINE L1 4757 5725 -575 10096 200 36 34 chr11 109258727 109260030 -39523442 + L1PA15-16 LINE L1 1058 2357 -4492 2035 136 0 3 chr11 109260030 109260324 -39523148 + AluSg SINE Alu 1 293 -17 10096 200 36 34 chr11 109260324 109260823 -39522649 + L1PA15-16 LINE L1 2357 2854 -3995 1832 155 166 0 chr11 109260823 109261002 -39522470 + MSTA LTR MaLR 1 149 -279 183 42 0 0 chr11 109261002 109261026 -39522446 + (TC)n Simple_repeat Simple_repeat 2 25 0 1832 155 166 0 chr11 109261026 109261213 -39522259 + MSTA LTR MaLR 149 428 0 9612 128 7 43 chr11 109261215 109262852 -39520620 + MSTA-int LTR MaLR 3 1580 0 1737 179 137 8 chr11 109262852 109263231 -39520241 + MSTA LTR MaLR 1 428 0 10096 200 36 34 chr11 109263231 109263260 -39520212 + L1PA15-16 LINE L1 2854 2881 -3968 2203 116 0 0 chr11 109263260 109263553 -39519919 + AluSx SINE Alu 3 295 -17 10096 200 36 34 chr11 109263553 109264999 -39518473 + L1PA15-16 LINE L1 2881 4368 -2481 3929 214 49 4 chr11 109265226 109266763 -39516709 + L1M2 LINE L1 1788 3395 -3453 3702 71 17 53 chr11 109267645 109268724 -39514748 + MER11A LTR ERVK 1 1266 0 51358 84 13 14 chr11 109268724 109272290 -39511182 + HERVK11 LTR ERVK 1 3569 -4384 185 308 62 0 chr11 109272290 109272355 -39511117 + MIR SINE MIR 64 132 -76 51358 84 13 14 chr11 109272355 109275996 -39507476 + HERVK11 LTR ERVK 3569 7265 -688 2946 134 44 0 chr11 109276371 109276708 -39506764 - L1MA5A LINE L1 -4 6935 6563 279 0 0 0 chr11 109276708 109276739 -39506733 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2946 134 44 0 chr11 109276739 109276946 -39506526 - L1MA5A LINE L1 -376 6563 6367 11210 178 38 7 chr11 109276968 109279761 -39503711 - L1MA5A LINE L1 -745 6194 3318 5094 53 0 0 chr11 109280541 109281183 -39502289 + HERVK11 LTR ERVK 7310 7951 -2 4953 128 63 38 chr11 109281185 109282324 -39501148 + MER11A LTR ERVK 1 1266 0 2095 125 0 3 chr11 109282457 109282753 -39500719 - AluY SINE Alu -16 295 1 4382 250 142 10 chr11 109283975 109285201 -39498271 - L1MA5A LINE L1 -5213 1576 189 8750 227 25 30 chr11 109285390 109287778 -39495694 + L1PA16 LINE L1 3072 5469 -697 1753 146 48 37 chr11 109287778 109288073 -39495399 + AluJb SINE Alu 2 299 -13 8750 227 25 30 chr11 109288073 109288193 -39495279 + L1PA16 LINE L1 5469 5588 -578 2312 71 7 3 chr11 109288193 109288487 -39494985 - AluY SINE Alu -16 295 1 8750 227 25 30 chr11 109288487 109289052 -39494420 + L1PA16 LINE L1 5588 6164 -2 655 286 123 0 chr11 109289304 109289507 -39493965 + L2 LINE L2 3081 3308 -5 303 145 13 26 chr11 109289536 109289612 -39493860 + GA-rich Low_complexity Low_complexity 3 77 0 2261 107 3 0 chr11 109289772 109290070 -39493402 + AluSx SINE Alu 1 299 -13 221 314 0 70 chr11 109290289 109290375 -39493097 + MIR SINE MIR 20 99 -109 243 204 20 0 chr11 109290495 109290544 -39492928 - L2 LINE L2 -1 3271 3222 236 340 109 14 chr11 109291214 109291354 -39492118 - MIR SINE MIR -57 151 26 2129 115 7 0 chr11 109293314 109293610 -39489862 - AluSp SINE Alu -11 302 5 1382 190 104 33 chr11 109294628 109294965 -39488507 + MLT1A1 LTR MaLR 1 361 -4 206 174 109 0 chr11 109295056 109295102 -39488370 - L2 LINE L2 -2 3311 3261 246 312 26 0 chr11 109295157 109295234 -39488238 + MIR SINE MIR 1 79 -183 833 203 45 0 chr11 109295254 109295431 -39488041 - MIR SINE MIR 0 262 78 384 237 114 0 chr11 109295531 109295645 -39487827 + MIR SINE MIR 136 262 0 487 290 67 39 chr11 109295693 109295976 -39487496 + HAL1b LINE L1 490 780 -568 2339 84 3 0 chr11 109297634 109297931 -39485541 - AluY SINE Alu -13 298 1 1220 255 43 13 chr11 109299056 109299458 -39484014 + L1ME3A LINE L1 5661 6075 -95 2278 96 15 73 chr11 109300050 109300447 -39483025 + THE1C LTR MaLR 1 374 -1 270 0 0 0 chr11 109300584 109300614 -39482858 + (CA)n Simple_repeat Simple_repeat 1 30 0 752 201 86 38 chr11 109300674 109300883 -39482589 + MER20 DNA MER1_type 1 219 0 688 253 56 78 chr11 109300919 109301515 -39481957 + L1MC5 LINE L1 6616 7191 -770 1903 169 99 2 chr11 109301534 109301936 -39481536 + Charlie1 DNA MER1_type 2321 2761 0 1157 278 45 19 chr11 109301941 109302366 -39481106 + L1MC4 LINE L1 7455 7890 -152 2531 52 7 0 chr11 109302622 109302931 -39480541 - AluY SINE Alu 0 311 1 4968 204 45 55 chr11 109302934 109303141 -39480331 - L1M1 LINE L1 -3933 2395 2187 2275 123 0 0 chr11 109303141 109303450 -39480022 - AluSg SINE Alu -1 309 1 4968 204 45 55 chr11 109303450 109304208 -39479264 - L1M1 LINE L1 -4141 2187 1451 1731 161 7 20 chr11 109304208 109304513 -39478959 - AluJo SINE Alu 0 312 12 4968 204 45 55 chr11 109304513 109305187 -39478285 - L1M1 LINE L1 -4877 1451 772 3298 186 14 6 chr11 109305216 109305864 -39477608 - L1M1 LINE L1 -4617 711 10 3006 254 85 32 chr11 109306000 109307615 -39475857 - L1MDb LINE L1 -3972 2434 775 1978 124 40 79 chr11 109308031 109308411 -39475061 + MLT1A1 LTR MaLR 1 365 0 481 219 38 0 chr11 109308413 109308518 -39474954 + MLT1A1-int LTR MaLR 2 110 -1625 189 302 131 40 chr11 109308533 109308785 -39474687 - L2 LINE L2 -1504 1810 1536 182 247 34 101 chr11 109309224 109309313 -39474159 + MIR3 SINE MIR 119 201 -7 22 0 0 0 chr11 109309721 109309743 -39473729 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr11 109310398 109310420 -39473052 + AT_rich Low_complexity Low_complexity 1 22 0 1236 244 88 16 chr11 109311676 109312053 -39471419 - MLT1J2 LTR MaLR -7 443 40 322 259 0 49 chr11 109312149 109312230 -39471242 - L2 LINE L2 0 3313 3237 365 208 0 0 chr11 109312230 109312302 -39471170 - L1MC4a LINE L1 -355 7453 7382 21 36 0 0 chr11 109312497 109312525 -39470947 + AT_rich Low_complexity Low_complexity 1 28 0 525 256 246 0 chr11 109312695 109312894 -39470578 - MIR SINE MIR -14 248 1 322 327 77 50 chr11 109313172 109313472 -39470000 - L2 LINE L2 0 3313 3006 236 235 169 37 chr11 109313645 109313781 -39469691 - L2 LINE L2 -1359 1955 1802 603 314 18 18 chr11 109313959 109314179 -39469293 + MIR SINE MIR 5 224 -38 847 116 79 95 chr11 109314204 109314350 -39469122 - L1M2 LINE L1 -558 5733 5589 4169 158 16 25 chr11 109314350 109315142 -39468330 + LTR1 LTR ERV1 1 785 0 847 116 79 95 chr11 109315142 109315184 -39468288 - L1M2 LINE L1 -702 5589 5548 683 166 84 135 chr11 109316158 109316454 -39467018 - MER33 DNA MER1_type -40 284 4 484 264 15 84 chr11 109316681 109316954 -39466518 - L2 LINE L2 0 3313 3060 280 236 35 32 chr11 109317272 109317354 -39466118 + MIR SINE MIR 3 85 -123 408 221 23 0 chr11 109317357 109317443 -39466029 - MER81 DNA DNA 0 114 27 901 213 122 37 chr11 109318439 109318771 -39464701 - MSTD LTR MaLR 0 396 1 299 279 0 0 chr11 109318890 109318958 -39464514 + MIR SINE MIR 4 71 -191 768 275 48 70 chr11 109319008 109319364 -39464108 + LTR16A LTR ERVL 99 446 -4 4005 287 60 24 chr11 109319369 109321908 -39461564 + HERV16 LTR ERVL 2 2688 -2308 726 339 43 57 chr11 109321984 109322707 -39460765 + ERVL LTR ERVL 4639 5351 -413 323 341 137 14 chr11 109322828 109323039 -39460433 + LTR16A LTR ERVL 7 243 -207 25 0 0 0 chr11 109323818 109323843 -39459629 + AT_rich Low_complexity Low_complexity 1 25 0 523 320 93 73 chr11 109323910 109324675 -39458797 - L2 LINE L2 -8 3264 2467 477 342 42 26 chr11 109324675 109324868 -39458604 + MER91A DNA MER1_type 1 196 0 211 367 58 14 chr11 109324868 109324985 -39458487 - L2 LINE L2 -842 2472 2350 284 0 28 0 chr11 109325004 109325040 -39458432 + (TG)n Simple_repeat Simple_repeat 1 37 0 1652 120 34 4 chr11 109325040 109325307 -39458165 + L1MA4A LINE L1 6023 6297 -6 316 311 44 0 chr11 109325326 109325416 -39458056 - MIR SINE MIR -118 144 51 243 0 0 0 chr11 109325685 109325712 -39457760 + (T)n Simple_repeat Simple_repeat 1 27 0 2049 136 7 0 chr11 109326150 109326445 -39457027 - AluSq SINE Alu -16 297 1 2113 170 25 6 chr11 109326523 109326881 -39456591 + MLT1A1 LTR MaLR 1 365 0 283 323 39 16 chr11 109326922 109327049 -39456423 + L2 LINE L2 2378 2507 -807 * 329 320 82 0 chr11 109327039 109327161 -39456311 + L2 LINE L2 3141 3272 0 226 291 85 107 chr11 109327165 109327567 -39455905 + L2 LINE L2 2470 2862 -452 2240 103 3 0 chr11 109327706 109327998 -39455474 - AluSg SINE Alu 0 310 18 188 175 0 75 chr11 109328203 109328243 -39455229 + L2 LINE L2 3222 3258 -14 340 337 52 41 chr11 109328329 109328501 -39454971 + MER5A DNA MER1_type 16 189 0 1411 36 12 0 chr11 109330198 109330365 -39453107 - L1PA3 LINE L1 -19 6136 5968 221 262 65 56 chr11 109330365 109330472 -39453000 - L2 LINE L2 -195 3077 2970 433 263 0 35 chr11 109330627 109330741 -39452731 - L2 LINE L2 0 3313 3204 705 325 20 36 chr11 109332627 109332876 -39450596 - MIR SINE MIR 0 262 18 1059 261 89 47 chr11 109333545 109334074 -39449398 + L1MC4a LINE L1 5311 5861 -1947 234 366 43 37 chr11 109334462 109334623 -39448849 - L2 LINE L2 -540 2774 2613 216 337 58 70 chr11 109337005 109337248 -39446224 + L3 LINE CR1 899 1138 -439 296 331 31 68 chr11 109337351 109337514 -39445958 + L3 LINE CR1 1416 1572 -5 253 292 159 9 chr11 109337701 109337814 -39445658 - MIR SINE MIR -111 151 22 23 33 0 0 chr11 109338768 109338798 -39444674 + AT_rich Low_complexity Low_complexity 1 30 0 287 273 0 45 chr11 109338816 109338926 -39444546 + LTR28 LTR ERV1 878 982 -38 222 194 0 0 chr11 109339077 109339113 -39444359 + (TG)n Simple_repeat Simple_repeat 1 36 0 367 340 57 10 chr11 109339200 109339394 -39444078 + MIR SINE MIR 23 225 -37 814 145 8 0 chr11 109339449 109339580 -39443892 + MER5A DNA MER1_type 47 178 -11 185 390 42 0 chr11 109340504 109340622 -39442850 + L2 LINE L2 2313 2435 -879 52 41 0 0 chr11 109340736 109340809 -39442663 + AT_rich Low_complexity Low_complexity 1 73 0 707 294 130 47 chr11 109341682 109342168 -39441304 + MLT1G LTR MaLR 10 535 -55 1957 154 13 0 chr11 109342424 109342723 -39440749 - AluSx SINE Alu -9 303 1 5610 107 30 0 chr11 109342802 109343848 -39439624 - L1PA14 LINE L1 0 6161 5134 2295 83 0 17 chr11 109343849 109344149 -39439323 - AluY SINE Alu -16 295 1 263 311 65 67 chr11 109344578 109344919 -39438553 + L1MEd LINE L1 44 383 -5736 1372 245 53 3 chr11 109345174 109345553 -39437919 + L1ME3A LINE L1 5678 6075 -95 2287 96 15 73 chr11 109346145 109346542 -39436930 + THE1C LTR MaLR 1 374 -1 270 0 0 0 chr11 109346679 109346709 -39436763 + (CA)n Simple_repeat Simple_repeat 1 30 0 764 196 86 38 chr11 109346769 109346978 -39436494 + MER20 DNA MER1_type 1 219 0 629 256 64 74 chr11 109347016 109347617 -39435855 + L1MC4 LINE L1 6625 7191 -770 1785 169 99 2 chr11 109347636 109348038 -39435434 + Charlie1 DNA MER1_type 2321 2761 0 1036 279 42 19 chr11 109348043 109348469 -39435003 + L1MC4 LINE L1 7455 7890 -152 1677 128 6 85 chr11 109348857 109349176 -39434296 - MER1B DNA MER1_type 0 339 46 403 305 134 18 chr11 109349963 109350127 -39433345 + MIR SINE MIR 64 246 -16 358 211 40 0 chr11 109350140 109350216 -39433256 - L2 LINE L2 -5 3308 3230 426 308 122 18 chr11 109350362 109350583 -39432889 + MIR SINE MIR 6 249 -13 1159 264 70 40 chr11 109351088 109351543 -39431929 - L2 LINE L2 -338 2976 2508 23 0 0 0 chr11 109351570 109351593 -39431879 + AT_rich Low_complexity Low_complexity 1 23 0 6621 82 20 0 chr11 109351603 109353292 -39430180 + L1PA7 LINE L1 4443 6151 -3 183 80 0 0 chr11 109353938 109353963 -39429509 + (A)n Simple_repeat Simple_repeat 1 25 0 1814 106 0 0 chr11 109354044 109354279 -39429193 + AluSq SINE Alu 1 235 -78 651 114 0 0 chr11 109354502 109354590 -39428882 + FRAM SINE Alu 35 122 -54 33 25 0 0 chr11 109354594 109354634 -39428838 + AT_rich Low_complexity Low_complexity 1 40 0 502 294 59 50 chr11 109354755 109354913 -39428559 + MIR SINE MIR 28 190 -72 14522 128 34 10 chr11 109354913 109357272 -39426200 + Tigger1 DNA MER2_type 1 2417 -1 502 294 59 50 chr11 109357272 109357334 -39426138 + MIR SINE MIR 190 250 -12 364 344 66 0 chr11 109357665 109357816 -39425656 - MER5A DNA MER1_type -28 161 1 2366 245 133 22 chr11 109357874 109358779 -39424693 - L2 LINE L2 -1027 2287 1283 350 214 18 54 chr11 109358801 109358913 -39424559 - Charlie7 DNA MER1_type -470 2142 2035 225 268 28 14 chr11 109358981 109359052 -39424420 + MIR SINE MIR 49 120 -142 1023 217 72 37 chr11 109359110 109359389 -39424083 - Charlie7 DNA MER1_type -613 1999 1702 2124 96 13 30 chr11 109359389 109359691 -39423781 - AluY SINE Alu -14 297 1 1023 217 72 37 chr11 109359691 109359785 -39423687 - Charlie7 DNA MER1_type -910 1702 1613 184 291 86 60 chr11 109360923 109361074 -39422398 + L2 LINE L2 2612 2766 -548 2134 113 10 3 chr11 109361628 109361930 -39421542 + AluSx SINE Alu 1 304 -8 385 222 0 0 chr11 109362025 109362115 -39421357 - MER46C DNA MER2_type 0 338 249 232 266 149 0 chr11 109362225 109362319 -39421153 - MER46C DNA MER2_type -230 108 1 2002 123 13 10 chr11 109362596 109362896 -39420576 + AluSx SINE Alu 1 301 -11 633 155 82 2 chr11 109362901 109363095 -39420377 + AluJo SINE Alu 3 258 -54 33 25 0 0 chr11 109363099 109363139 -39420333 + AT_rich Low_complexity Low_complexity 1 40 0 502 294 59 50 chr11 109363260 109363418 -39420054 + MIR SINE MIR 28 190 -72 14510 130 34 10 chr11 109363418 109365778 -39417694 + Tigger1 DNA MER2_type 1 2417 -1 502 294 59 50 chr11 109365778 109365840 -39417632 + MIR SINE MIR 190 250 -12 364 344 66 0 chr11 109366171 109366322 -39417150 - MER5A DNA MER1_type -28 161 1 2366 245 133 22 chr11 109366380 109367285 -39416187 - L2 LINE L2 -1027 2287 1283 350 214 18 54 chr11 109367307 109367419 -39416053 - Charlie7 DNA MER1_type -470 2142 2035 229 268 28 14 chr11 109367487 109367558 -39415914 + MIR SINE MIR 49 120 -142 943 226 75 35 chr11 109367615 109367892 -39415580 - Charlie7 DNA MER1_type -613 1999 1702 1982 97 13 49 chr11 109367892 109368200 -39415272 - AluY SINE Alu -14 297 1 943 226 75 35 chr11 109368200 109368294 -39415178 - Charlie7 DNA MER1_type -910 1702 1613 22 35 0 0 chr11 109368716 109368745 -39414727 + AT_rich Low_complexity Low_complexity 1 29 0 184 291 86 60 chr11 109369415 109369566 -39413906 + L2 LINE L2 2612 2766 -548 2134 113 10 3 chr11 109370121 109370423 -39413049 + AluSx SINE Alu 1 304 -8 385 222 0 0 chr11 109370518 109370608 -39412864 - MER46C DNA MER2_type 0 338 249 232 266 149 0 chr11 109370718 109370812 -39412660 - MER46C DNA MER2_type -230 108 1 2303 112 0 0 chr11 109371089 109371394 -39412078 + AluSx SINE Alu 1 305 -7 429 255 149 32 chr11 109371525 109371804 -39411668 - L1MC4a LINE L1 -370 5796 5568 354 239 183 24 chr11 109371865 109372076 -39411396 - L1MC4a LINE L1 -747 5399 5198 21 0 0 0 chr11 109372311 109372332 -39411140 + AT_rich Low_complexity Low_complexity 1 21 0 355 295 102 0 chr11 109372435 109372601 -39410871 + MIR SINE MIR 65 247 -15 523 244 30 0 chr11 109372839 109372970 -39410502 + MIR SINE MIR 128 262 0 1904 151 19 3 chr11 109373556 109373874 -39409598 - MER1B DNA MER1_type 0 339 17 475 234 70 16 chr11 109374535 109374663 -39408809 + MIR SINE MIR 106 240 -22 377 319 25 17 chr11 109376329 109376448 -39407024 + L2 LINE L2 3134 3253 -19 2235 63 49 3 chr11 109376516 109376802 -39406670 + AluY SINE Alu 1 299 -12 220 307 40 59 chr11 109376995 109377096 -39406376 - L2 LINE L2 -6 3266 3168 790 265 90 14 chr11 109377673 109377896 -39405576 + MIR SINE MIR 8 247 -15 439 260 32 41 chr11 109378544 109378667 -39404805 - MIR SINE MIR -31 231 110 284 284 57 11 chr11 109379081 109379169 -39404303 + MIR3 SINE MIR 67 158 -50 200 254 0 63 chr11 109380182 109380245 -39403227 + (CATATA)n Simple_repeat Simple_repeat 1 59 0 362 277 119 86 chr11 109382119 109382513 -39400959 - L1M2 LINE L1 -5734 1115 709 327 247 24 0 chr11 109385453 109385538 -39397934 + MLT1J2 LTR MaLR 361 447 -3 260 323 84 24 chr11 109385547 109385714 -39397758 - L2 LINE L2 -272 3000 2824 675 184 49 21 chr11 109385785 109386464 -39397008 - L1MB7 LINE L1 -14 6170 5402 477 262 131 26 chr11 109386502 109386693 -39396779 - MIR SINE MIR -34 228 18 361 239 201 0 chr11 109387096 109387230 -39396242 - L1MA10 LINE L1 -7 6327 6167 331 241 23 138 chr11 109387230 109387404 -39396068 - L1ME1 LINE L1 -137 6029 5876 4221 176 73 34 chr11 109387422 109388441 -39395031 - L1MC3 LINE L1 -16 7769 6712 1002 210 93 10 chr11 109388444 109388754 -39394718 - L1ME2 LINE L1 -208 5956 5621 1122 207 15 2 chr11 109388765 109389076 -39394396 + MLT1A1 LTR MaLR 1 365 0 1987 223 24 25 chr11 109389090 109389933 -39393539 - L1ME2 LINE L1 -581 5585 4732 1115 206 88 12 chr11 109390300 109390620 -39392852 - L1ME2 LINE L1 -1421 4725 4382 952 260 12 31 chr11 109390625 109390948 -39392524 - MLT1E1 LTR MaLR 0 654 310 242 217 12 60 chr11 109390927 109391010 -39392462 - MLT1E1 LTR MaLR -419 205 127 * 189 0 0 0 chr11 109391010 109391031 -39392441 + (T)n Simple_repeat Simple_repeat 1 21 0 1637 177 10 42 chr11 109391170 109391480 -39391992 - AluJo SINE Alu -12 300 1 633 216 48 6 chr11 109391480 109391647 -39391825 - MLT1E1 LTR MaLR -468 186 13 1500 274 13 0 chr11 109391701 109392150 -39391322 - L1ME2 LINE L1 -2038 4108 3654 2162 121 0 23 chr11 109392173 109392478 -39390994 - AluSx SINE Alu -14 298 1 301 282 159 0 chr11 109392800 109392934 -39390538 - MIR SINE MIR -73 189 31 557 274 44 22 chr11 109393386 109393772 -39389700 - MLT1L LTR MaLR -2 613 184 184 222 74 0 chr11 109393804 109393858 -39389614 + L2 LINE L2 1461 1518 -1796 2469 67 0 0 chr11 109394436 109394736 -39388736 + AluY SINE Alu 1 300 -11 3755 101 6 0 chr11 109394993 109395539 -39387933 - MER41B LTR ERV1 -86 549 1 13986 99 35 6 chr11 109395541 109397627 -39385845 - MER41B-int LTR ERV1 -4 5942 3796 2339 101 0 0 chr11 109398758 109399055 -39384417 + AluSx SINE Alu 1 297 -15 300 293 108 0 chr11 109399452 109399619 -39383853 - HAL1b LINE L1 -770 578 394 207 277 0 0 chr11 109399885 109399950 -39383522 + T-rich Low_complexity Low_complexity 1 65 0 1560 234 50 31 chr11 109399964 109400422 -39383050 - MLT1C LTR MaLR 0 467 1 780 227 56 14 chr11 109400453 109400669 -39382803 - L1PA16 LINE L1 -5 6161 5937 1800 202 56 84 chr11 109400673 109401313 -39382159 - L1MC4 LINE L1 0 8042 7421 451 103 15 0 chr11 109401324 109401392 -39382080 + AluSg/x SINE Alu 203 271 -39 589 283 100 41 chr11 109401433 109402748 -39380724 - L1MC4a LINE L1 -813 5333 5073 1287 185 54 74 chr11 109402748 109403045 -39380427 - AluJo SINE Alu -21 291 1 589 283 100 41 chr11 109403045 109403561 -39379911 - L1MC4a LINE L1 -1073 5073 4589 32 26 0 0 chr11 109403569 109403608 -39379864 + AT_rich Low_complexity Low_complexity 1 39 0 9301 36 0 5 chr11 109403826 109405724 -39377748 - L1PA4 LINE L1 0 6155 4250 528 33 0 0 chr11 109405724 109405785 -39377687 + L1PA4 LINE L1 4189 4249 -1897 602 305 117 0 chr11 109405831 109406251 -39377221 - L1MC4a LINE L1 -1665 4481 4013 183 80 0 0 chr11 109406256 109406281 -39377191 + (TATATG)n Simple_repeat Simple_repeat 5 29 0 351 113 0 0 chr11 109406316 109406327 -39377145 + (TG)n Simple_repeat Simple_repeat 1 64 0 351 113 0 0 chr11 109406327 109406380 -39377092 + (TG)n Simple_repeat Simple_repeat 2 54 0 245 197 16 0 chr11 109406497 109406558 -39376914 + (TA)n Simple_repeat Simple_repeat 2 63 0 180 0 0 0 chr11 109406912 109406932 -39376540 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 4691 159 10 24 chr11 109406939 109407147 -39376325 - L1MA6 LINE L1 -24 6276 6067 1578 120 0 34 chr11 109407147 109407414 -39376058 - L1PA10 LINE L1 -1 6167 5910 4691 159 10 24 chr11 109407414 109408086 -39375386 - L1MA6 LINE L1 -233 6067 5408 737 191 65 24 chr11 109409014 109409182 -39374290 + MLT1B LTR MaLR 1 175 -215 408 111 0 0 chr11 109409190 109409253 -39374219 + (TC)n Simple_repeat Simple_repeat 2 64 0 935 187 32 0 chr11 109409265 109409452 -39374020 + MLT1B LTR MaLR 191 383 -7 3049 88 56 5 chr11 109409452 109409883 -39373589 - MLT2A2 LTR ERVL 0 453 1 225 0 0 0 chr11 109410664 109410689 -39372783 + (T)n Simple_repeat Simple_repeat 1 25 0 1536 240 63 4 chr11 109410929 109411433 -39372039 - L1MC4a LINE L1 -3339 2807 2274 13920 191 37 32 chr11 109411450 109411715 -39371757 - L1MA4A LINE L1 -27 6276 6014 2208 131 47 6 chr11 109411715 109412075 -39371397 + THE1C LTR MaLR 1 375 0 9786 102 19 76 chr11 109412075 109413751 -39369721 + THE1C-int LTR MaLR 1 1580 0 2628 113 11 3 chr11 109413751 109414123 -39369349 + THE1C LTR MaLR 1 375 0 13920 191 37 32 chr11 109414123 109416207 -39367265 - L1MA4A LINE L1 -289 6014 3943 1463 44 22 0 chr11 109416207 109416390 -39367082 - L1PA3 LINE L1 0 6155 5969 13920 191 37 32 chr11 109416390 109417924 -39365548 - L1MA4A LINE L1 -2360 3943 2353 2049 122 0 17 chr11 109417924 109418219 -39365253 - AluSg1 SINE Alu -19 290 1 13920 191 37 32 chr11 109418219 109418372 -39365100 - L1MA4A LINE L1 -3950 2353 2202 252 0 0 0 chr11 109418372 109418400 -39365072 + (T)n Simple_repeat Simple_repeat 1 28 0 219 69 0 0 chr11 109470689 109470718 -39312754 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 2409 135 54 10 chr11 109470796 109471204 -39312268 - MSTA LTR MaLR -2 426 1 210 305 152 48 chr11 109471246 109471515 -39311957 + L2 LINE L2 2968 3264 -49 4296 151 4 1 chr11 109471961 109472681 -39310791 - L1MB2 LINE L1 0 6171 5450 753 218 5 62 chr11 109473435 109473628 -39309844 - MER20 DNA MER1_type -2 217 36 490 284 175 9 chr11 109473935 109474146 -39309326 - MIR SINE MIR -1 261 16 279 0 0 0 chr11 109475082 109475113 -39308359 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 215 322 82 68 chr11 109475509 109475655 -39307817 - L2 LINE L2 -614 2700 2553 566 282 143 5 chr11 109475860 109476076 -39307396 + MIR SINE MIR 7 252 -10 210 37 0 0 chr11 109477270 109477297 -39306175 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 212 189 0 0 chr11 109477936 109477973 -39305499 + A-rich Low_complexity Low_complexity 1 37 0 181 275 150 50 chr11 109481187 109481307 -39302165 + L2 LINE L2 3141 3272 0 202 333 0 0 chr11 109482392 109482449 -39301023 + CT-rich Low_complexity Low_complexity 4 60 0 180 0 0 0 chr11 109483328 109483348 -39300124 + (T)n Simple_repeat Simple_repeat 1 20 0 2047 142 13 93 chr11 109485458 109485846 -39297626 + LTR18A LTR ERVL 1 357 0 21 0 0 0 chr11 109486971 109486992 -39296480 + AT_rich Low_complexity Low_complexity 1 21 0 1513 155 94 55 chr11 109487720 109487919 -39295553 - THE1C LTR MaLR 0 375 154 2377 78 0 3 chr11 109487919 109488213 -39295259 - AluY SINE Alu -17 294 2 1513 155 94 55 chr11 109488213 109488374 -39295098 - THE1C LTR MaLR -221 154 1 425 261 60 80 chr11 109489120 109489319 -39294153 - MIR SINE MIR -57 205 11 203 88 29 0 chr11 109490044 109490078 -39293394 + (TC)n Simple_repeat Simple_repeat 2 36 0 358 369 35 0 chr11 109490307 109490448 -39293024 - MIR SINE MIR -105 157 12 196 303 166 40 chr11 109490541 109490716 -39292756 + L2 LINE L2 2326 2522 -792 188 326 70 12 chr11 109491085 109491171 -39292301 + L2 LINE L2 2995 3085 -187 1911 149 0 0 chr11 109491752 109492053 -39291419 - AluJb SINE Alu 0 301 1 246 274 69 69 chr11 109492070 109492253 -39291219 - MER5B DNA MER1_type 0 178 7 6433 91 31 19 chr11 109493569 109495412 -39288060 - LTR10A-int LTR ERV1 -4304 2592 712 556 236 72 117 chr11 109495834 109496473 -39286999 - LTR10A-int LTR ERV1 -6064 792 1 1698 130 53 66 chr11 109496482 109496859 -39286613 - LTR10A LTR ERV1 -61 548 177 1188 96 76 76 chr11 109496844 109497095 -39286377 - LTR10A LTR ERV1 -172 437 187 * 2330 119 0 0 chr11 109497287 109497589 -39285883 - AluSq SINE Alu -11 302 1 1010 173 0 0 chr11 109498966 109499139 -39284333 - FRAM SINE Alu -3 173 1 217 309 62 0 chr11 109499141 109499222 -39284250 - MIR SINE MIR -58 150 65 253 243 144 40 chr11 109499241 109499414 -39284058 - MLT1J LTR MaLR -18 493 303 949 155 0 7 chr11 109499509 109499664 -39283808 + FRAM SINE Alu 6 159 -17 420 281 163 0 chr11 109500741 109500901 -39282571 + MER5A DNA MER1_type 4 189 0 350 356 25 6 chr11 109501349 109501509 -39281963 + MIR SINE MIR 24 186 -76 453 310 27 16 chr11 109502611 109502795 -39280677 + MLT1L LTR MaLR 430 615 0 753 265 130 30 chr11 109503635 109504176 -39279296 - MLT1G1 LTR MaLR 0 595 10 27 0 0 0 chr11 109504192 109504219 -39279253 + AT_rich Low_complexity Low_complexity 1 27 0 494 293 66 59 chr11 109504327 109504583 -39278889 - MIR SINE MIR -2 260 3 1116 120 16 31 chr11 109505236 109505428 -39278044 + L1PA10 LINE L1 5980 6168 0 2184 115 0 3 chr11 109506009 109506305 -39277167 - AluSx SINE Alu -17 295 1 218 179 0 107 chr11 109506417 109506473 -39276999 - L2 LINE L2 -2 3311 3262 393 321 26 36 chr11 109506572 109506765 -39276707 + MIR3 SINE MIR 5 195 -13 2283 81 3 14 chr11 109507030 109507326 -39276146 - AluSg SINE Alu -17 293 1 347 315 11 0 chr11 109507339 109507431 -39276041 - MER5A DNA MER1_type -93 96 4 2266 119 0 0 chr11 109508269 109508563 -39274909 - AluSx SINE Alu -18 294 1 279 336 34 42 chr11 109508576 109508695 -39274777 + L2 LINE L2 3149 3266 -6 2271 95 3 0 chr11 109511305 109511600 -39271872 + AluSp SINE Alu 1 296 -17 2133 126 0 19 chr11 109512120 109512437 -39271035 + AluSx SINE Alu 1 311 -1 585 0 0 0 chr11 109513878 109513943 -39269529 + (TTTTA)n Simple_repeat Simple_repeat 1 65 0 844 234 178 0 chr11 109514075 109514378 -39269094 - L1MC4 LINE L1 -452 7590 7234 1509 189 56 21 chr11 109514416 109514725 -39268747 + AluJb SINE Alu 1 312 0 25 0 0 0 chr11 109515291 109515316 -39268156 + AT_rich Low_complexity Low_complexity 1 25 0 678 166 40 26 chr11 109515621 109515772 -39267700 + 7SK RNA RNA 1 153 -40 325 153 17 0 chr11 109515789 109515848 -39267624 + 7SK RNA RNA 126 185 -8 343 311 112 50 chr11 109517553 109517975 -39265497 + L2 LINE L2 2766 3213 -100 2431 231 11 4 chr11 109518671 109519378 -39264094 + L1 LINE L1 2849 3560 -2586 4425 210 11 3 chr11 109519382 109520460 -39263012 + L1 LINE L1 4079 5165 -981 2341 109 0 0 chr11 109520561 109520864 -39262608 - AluSx SINE Alu -9 303 1 1657 199 67 0 chr11 109521009 109521370 -39262102 + Tigger3b DNA MER2_type 2 386 -845 423 228 0 0 chr11 109521374 109521453 -39262019 + Tigger3b DNA MER2_type 1153 1231 -1 466 252 48 0 chr11 109521563 109521710 -39261762 + MER63A DNA MER1_type 57 210 0 190 356 35 11 chr11 109523544 109523631 -39259841 + L2 LINE L2 2710 2798 -516 247 294 108 20 chr11 109523705 109523807 -39259665 - MIR SINE MIR -73 189 79 202 219 24 0 chr11 109526485 109526526 -39256946 - L2 LINE L2 -16 3256 3215 24 67 0 0 chr11 109526528 109526573 -39256899 + AT_rich Low_complexity Low_complexity 1 45 0 214 298 53 0 chr11 109527366 109527460 -39256012 + L2 LINE L2 2428 2526 -788 1046 147 6 6 chr11 109527607 109527770 -39255702 + FRAM SINE Alu 1 155 -21 405 78 125 0 chr11 109528684 109528748 -39254724 + MIR SINE MIR 91 162 -100 21 36 0 0 chr11 109530013 109530041 -39253431 + AT_rich Low_complexity Low_complexity 1 28 0 540 283 108 19 chr11 109530046 109530258 -39253214 - MIR SINE MIR -14 248 18 2285 112 0 7 chr11 109531781 109532086 -39251386 + AluSx SINE Alu 1 303 -9 395 330 123 6 chr11 109533184 109533381 -39250091 - MIR SINE MIR -6 256 39 198 286 0 16 chr11 109533860 109533923 -39249549 - L2 LINE L2 -1 3312 3251 2329 106 3 6 chr11 109534433 109534744 -39248728 - AluSp SINE Alu -3 310 1 2165 117 0 22 chr11 109534937 109535253 -39248219 - AluSx SINE Alu -3 309 1 222 171 0 0 chr11 109535436 109535477 -39247995 + CT-rich Low_complexity Low_complexity 2 42 0 1490 238 6 10 chr11 109535477 109535788 -39247684 - AluJo SINE Alu -2 310 1 801 246 41 9 chr11 109536820 109537040 -39246432 + MIR SINE MIR 2 228 -34 228 314 108 0 chr11 109537083 109537185 -39246287 + L2 LINE L2 3104 3216 -56 194 0 39 0 chr11 109537687 109537713 -39245759 + (TG)n Simple_repeat Simple_repeat 1 27 0 824 269 64 5 chr11 109538650 109538869 -39244603 - MIR SINE MIR -9 253 22 1824 162 148 19 chr11 109539589 109540002 -39243470 - MER31B LTR ERV1 0 466 1 504 211 18 0 chr11 109540233 109540342 -39243130 - MIR SINE MIR -21 241 131 1689 156 13 22 chr11 109540342 109540657 -39242815 - Tigger3(Golem) DNA MER2_type -2 3027 2716 702 202 0 0 chr11 109540712 109540831 -39242641 - MIR SINE MIR -131 131 13 276 30 0 0 chr11 109541174 109541207 -39242265 + (T)n Simple_repeat Simple_repeat 1 33 0 2098 117 16 26 chr11 109541323 109541630 -39241842 - AluSx SINE Alu -8 304 1 384 160 170 0 chr11 109541880 109541980 -39241492 - L2 LINE L2 -83 3230 3114 744 121 0 9 chr11 109542013 109542129 -39241343 + FLAM_C SINE Alu 19 133 -10 720 323 16 0 chr11 109542135 109542383 -39241089 - L2 LINE L2 -976 2338 2087 1237 191 76 69 chr11 109542902 109543190 -39240282 - AluJo SINE Alu -22 290 1 23 33 0 0 chr11 109543306 109543336 -39240136 + AT_rich Low_complexity Low_complexity 1 30 0 1571 125 121 21 chr11 109543432 109543712 -39239760 - AluJb SINE Alu -4 308 1 227 135 0 0 chr11 109543866 109543903 -39239569 + Charlie5 DNA MER1_type 2549 2585 -27 453 314 52 35 chr11 109543915 109544144 -39239328 - MIR SINE MIR -1 261 29 3874 139 18 5 chr11 109544358 109544985 -39238487 - MER41B LTR ERV1 0 635 1 24 0 0 0 chr11 109545492 109545516 -39237956 + AT_rich Low_complexity Low_complexity 1 24 0 1799 156 7 0 chr11 109545718 109546048 -39237424 - AluSq SINE Alu 0 332 1 2016 139 7 0 chr11 109546091 109546394 -39237078 - AluSq SINE Alu -8 305 1 1335 81 0 35 chr11 109547285 109547459 -39236013 - AluSc SINE Alu -11 298 131 1956 123 7 14 chr11 109547460 109547753 -39235719 - AluSg SINE Alu -19 291 1 1746 278 109 44 chr11 109548021 109548299 -39235173 + L2 LINE L2 2120 2378 -935 873 222 69 0 chr11 109548299 109548502 -39234970 + MER20 DNA MER1_type 2 218 -1 1746 278 109 44 chr11 109548502 109549331 -39234141 + L2 LINE L2 2378 3313 0 809 146 0 16 chr11 109549568 109549691 -39233781 + AluJb SINE Alu 4 124 -188 22 56 0 0 chr11 109549693 109549729 -39233743 + AT_rich Low_complexity Low_complexity 1 36 0 2078 137 17 0 chr11 109549866 109550166 -39233306 + AluSx SINE Alu 1 305 -7 2012 131 0 0 chr11 109550410 109550692 -39232780 + AluSx SINE Alu 1 282 -30 203 0 0 36 chr11 109550701 109550729 -39232743 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 306 262 174 39 chr11 109551421 109551709 -39231763 - L1M4 LINE L1 -1637 4509 4148 1736 166 49 0 chr11 109551709 109551993 -39231479 - AluJb SINE Alu -14 298 1 306 262 174 39 chr11 109551993 109552113 -39231359 - L1M4 LINE L1 -1998 4148 4046 247 260 52 21 chr11 109552865 109552961 -39230511 + L1MD1 LINE L1 6109 6207 -35 2872 3 0 0 chr11 109552961 109553269 -39230203 + AluYb8 SINE Alu 1 308 -10 9540 128 24 48 chr11 109553386 109555059 -39228413 + Tigger1 DNA MER2_type 787 2418 0 187 304 88 48 chr11 109556311 109556436 -39227036 - L2 LINE L2 -2054 1260 1131 1352 179 4 0 chr11 109557224 109557458 -39226014 - MER46A DNA MER2_type -1 235 1 212 163 0 0 chr11 109557878 109557921 -39225551 + T-rich Low_complexity Low_complexity 1 43 0 183 80 0 0 chr11 109558701 109558726 -39224746 + (T)n Simple_repeat Simple_repeat 1 25 0 1759 135 37 35 chr11 109558851 109558995 -39224477 - L1PBb LINE L1 -4835 1369 1227 2158 108 0 0 chr11 109558995 109559283 -39224189 - AluSg SINE Alu -20 290 3 1759 135 37 35 chr11 109559283 109559555 -39223917 - L1PBb LINE L1 -4977 1227 950 312 70 0 0 chr11 109559555 109559598 -39223874 + (TG)n Simple_repeat Simple_repeat 2 44 0 1759 135 37 35 chr11 109559598 109559792 -39223680 - L1PBb LINE L1 -5254 950 758 1587 187 191 28 chr11 109559808 109560279 -39223193 - LTR10A LTR ERV1 -61 548 1 5917 240 16 27 chr11 109560282 109561789 -39221683 - LTR10A-int LTR ERV1 -4 6645 5156 180 77 0 0 chr11 109562058 109562084 -39221388 + (T)n Simple_repeat Simple_repeat 1 26 0 22 35 0 0 chr11 109562153 109562182 -39221290 + AT_rich Low_complexity Low_complexity 1 29 0 455 258 32 32 chr11 109563286 109563410 -39220062 - MIR3 SINE MIR -21 187 64 4289 269 42 30 chr11 109564105 109565782 -39217690 - L1PBa LINE L1 -5219 1644 3 249 368 64 16 chr11 109566721 109566846 -39216626 - L2 LINE L2 0 3313 3183 1386 215 34 7 chr11 109568272 109568565 -39214907 + AluJo SINE Alu 1 301 -11 2338 87 7 0 chr11 109569536 109569835 -39213637 + AluSp SINE Alu 1 301 -12 198 321 116 18 chr11 109570354 109570466 -39213006 - L2 LINE L2 -1 3312 3190 348 272 146 54 chr11 109570509 109570914 -39212558 - HAL1 LINE L1 -32 2475 2034 2373 75 0 7 chr11 109570917 109571222 -39212250 - AluY SINE Alu -8 303 1 21 57 0 0 chr11 109571459 109571494 -39211978 + AT_rich Low_complexity Low_complexity 1 35 0 1849 138 76 0 chr11 109571958 109572077 -39211395 + AluJb SINE Alu 1 110 -202 201 74 0 0 chr11 109572077 109572104 -39211368 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1849 138 76 0 chr11 109572104 109572274 -39211198 + AluJb SINE Alu 110 312 0 1598 139 31 28 chr11 109572389 109572676 -39210796 + LTR32 LTR ERVL 179 466 -5 365 350 55 78 chr11 109572711 109573057 -39210415 + L2 LINE L2 2925 3262 -10 2473 112 11 3 chr11 109574086 109574452 -39209020 - L1PB1 LINE L1 0 6151 5783 182 204 0 20 chr11 109574459 109574508 -39208964 + (TA)n Simple_repeat Simple_repeat 1 48 0 2422 99 20 0 chr11 109574508 109574863 -39208609 - L1PB1 LINE L1 -360 5791 5430 380 158 24 49 chr11 109575305 109575387 -39208085 - MER5A DNA MER1_type -76 113 34 239 219 82 41 chr11 109575327 109575400 -39208072 + MER5A DNA MER1_type 105 180 -9 * 303 309 27 27 chr11 109576419 109576529 -39206943 - L2 LINE L2 -237 3035 2926 341 271 234 0 chr11 109576606 109576713 -39206759 + MIR SINE MIR 109 240 -22 3783 172 16 42 chr11 109576832 109577588 -39205884 + Tigger1 DNA MER2_type 1 736 -1682 811 139 7 42 chr11 109579173 109579317 -39204155 - Tigger3(Golem) DNA MER2_type -119 2910 2772 717 168 18 0 chr11 109579314 109579427 -39204045 - Tigger3(Golem) DNA MER2_type -2887 142 28 * 224 316 53 0 chr11 109579942 109580056 -39203416 + L2 LINE L2 2428 2547 -767 210 296 0 37 chr11 109580149 109580230 -39203242 + MIR SINE MIR 185 262 0 273 29 0 0 chr11 109580342 109580376 -39203096 + (TG)n Simple_repeat Simple_repeat 2 35 0 342 219 0 0 chr11 109580835 109580908 -39202564 - L1MC4 LINE L1 -4 8038 7966 466 288 8 30 chr11 109582309 109582441 -39201031 + L2 LINE L2 3184 3312 -1 333 255 123 9 chr11 109583437 109583543 -39199929 + MER82 DNA MER2_type 507 624 -29 56737 83 12 13 chr11 109683543 109687360 -39096112 - HERVK11 LTR ERVK -513 7440 3569 186 308 62 0 chr11 109687360 109687425 -39096047 - MIR SINE MIR -76 132 64 56737 83 12 13 chr11 109687425 109690991 -39092481 - HERVK11 LTR ERVK -4384 3569 1 4019 71 17 53 chr11 109690991 109692070 -39091402 - MER11A LTR ERVK 0 1266 1 9732 217 88 10 chr11 109692952 109696038 -39087434 - L1 LINE L1 -3453 3335 14 2420 88 0 0 chr11 109696637 109696944 -39086528 - AluY SINE Alu -4 307 1 22 0 0 0 chr11 109696968 109696990 -39086482 + AT_rich Low_complexity Low_complexity 1 22 0 268 323 131 0 chr11 109697186 109697316 -39086156 + L1MEd LINE L1 4 150 -5969 774 263 110 50 chr11 109697505 109698247 -39085225 + L1MEd LINE L1 563 1379 -4896 509 211 130 0 chr11 109698580 109698651 -39084821 - LTR52 LTR ERVL -1 420 360 216 0 0 0 chr11 109698651 109698675 -39084797 + (CA)n Simple_repeat Simple_repeat 2 25 0 509 211 130 0 chr11 109698675 109698726 -39084746 - LTR52 LTR ERVL -61 360 282 2502 55 7 3 chr11 109698726 109699036 -39084436 + AluY SINE Alu 1 311 0 1243 193 60 25 chr11 109699184 109699469 -39084003 - LTR52 LTR ERVL -126 295 1 1071 204 20 0 chr11 109699469 109699665 -39083807 - LTR52-int LTR ERVL 0 3556 3357 1722 173 15 102 chr11 109699669 109700069 -39083403 + MLT1A1 LTR MaLR 1 365 0 1048 218 50 20 chr11 109700240 109700534 -39082938 - MLT1B LTR MaLR -61 313 1 493 183 86 0 chr11 109700534 109700627 -39082845 - HERVL74 LTR ERVL -3757 1928 1828 2300 106 0 3 chr11 109700630 109700932 -39082540 + AluSx SINE Alu 1 301 -11 47404 89 30 25 chr11 109700939 109711038 -39072434 - HERV9 LTR ERV1 0 8399 17 4926 89 13 175 chr11 109711038 109712640 -39070832 - pTR5 LTR ERV1 0 2606 1524 3180 197 40 12 chr11 109712639 109713315 -39070157 - HERVL74 LTR ERVL -3861 1824 1130 * 253 239 0 23 chr11 109713365 109713453 -39070019 + CT-rich Low_complexity Low_complexity 3 88 0 531 192 32 56 chr11 109713484 109713609 -39069863 - HERVL74 LTR ERVL -2587 969 848 313 234 64 11 chr11 109713606 109713700 -39069772 - HERVL74 LTR ERVL -2853 703 605 * 189 0 0 0 chr11 109713700 109713721 -39069751 + (CAG)n Simple_repeat Simple_repeat 3 23 0 1629 232 114 8 chr11 109713733 109714211 -39069261 - HERVL74 LTR ERVL -2994 562 3 425 256 58 0 chr11 109714220 109714357 -39069115 + LTR52 LTR ERVL 187 331 -90 450 0 0 0 chr11 109714359 109714409 -39069063 + (TG)n Simple_repeat Simple_repeat 1 50 0 305 267 95 0 chr11 109714615 109714720 -39068752 + L1MEc LINE L1 2160 2274 -4122 395 225 35 92 chr11 109714770 109714943 -39068529 + L1MEc LINE L1 2317 2479 -3736 2134 180 91 30 chr11 109714943 109715405 -39068067 + LTR2B LTR ERV1 1 490 0 2645 127 5 0 chr11 109715405 109715790 -39067682 + Harlequin LTR ERV1 1 387 -6509 793 141 0 42 chr11 109715783 109715925 -39067547 + HERV17 LTR ERV1 262 397 -7416 * 5126 101 32 17 chr11 109715896 109716707 -39066765 + HERV17 LTR ERV1 256 1078 -5818 273 95 48 0 chr11 109716708 109716771 -39066701 + GA-rich Low_complexity Low_complexity 1 66 0 1656 154 117 49 chr11 109716776 109717354 -39066118 + HERV17 LTR ERV1 704 1416 -5480 * 4013 108 42 23 chr11 109717347 109718077 -39065395 + HERV17 LTR ERV1 1817 2560 -4336 34409 72 5 3 chr11 109718142 109722479 -39060993 + HERV17 LTR ERV1 2552 6896 0 1829 184 68 46 chr11 109722479 109722688 -39060784 + LTR2 LTR ERV1 1 204 -245 186 43 0 0 chr11 109722688 109722711 -39060761 + (TTCTG)n Simple_repeat Simple_repeat 1 23 0 1829 184 68 46 chr11 109722711 109722940 -39060532 + LTR2 LTR ERV1 204 449 0 258 256 0 0 chr11 109723038 109723116 -39060356 + (TA)n Simple_repeat Simple_repeat 1 78 0 714 298 113 11 chr11 109723121 109723493 -39059979 + L1ME3 LINE L1 5542 5951 -211 22 0 0 0 chr11 109723525 109723547 -39059925 + AT_rich Low_complexity Low_complexity 1 22 0 473 17 0 0 chr11 109723755 109723813 -39059659 - L1PA2 LINE L1 -2 6153 6096 24 32 0 0 chr11 109723819 109723850 -39059622 + AT_rich Low_complexity Low_complexity 1 31 0 225 0 0 0 chr11 109725979 109726004 -39057468 + (TTG)n Simple_repeat Simple_repeat 3 27 0 1967 149 0 0 chr11 109726008 109726303 -39057169 - AluSx SINE Alu -17 295 1 354 331 60 43 chr11 109726712 109726896 -39056576 - MIR SINE MIR -56 206 20 21 0 0 0 chr11 109726999 109727020 -39056452 + AT_rich Low_complexity Low_complexity 1 21 0 258 32 0 0 chr11 109727064 109727095 -39056377 + (TC)n Simple_repeat Simple_repeat 1 31 0 185 286 77 22 chr11 109727169 109727260 -39056212 - L2 LINE L2 -245 3027 2932 216 364 34 68 chr11 109727859 109727977 -39055495 - MER91A DNA MER1_type -82 114 1 * 239 312 13 13 chr11 109727977 109728038 -39055434 + MER5A DNA MER1_type 60 120 -69 210 71 0 0 chr11 109728151 109728179 -39055293 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 299 399 71 25 chr11 109728317 109728598 -39054874 - L2 LINE L2 -167 3105 2812 377 248 13 46 chr11 109728776 109728929 -39054543 + CT-rich Low_complexity Low_complexity 1 148 0 320 344 66 16 chr11 109728949 109729071 -39054401 - L2 LINE L2 -9 3263 3136 389 294 48 8 chr11 109729288 109729414 -39054058 - MIR SINE MIR -58 204 74 338 305 85 27 chr11 109729503 109729726 -39053746 - L2 LINE L2 -830 2484 2249 21 0 0 0 chr11 109729892 109729913 -39053559 + AT_rich Low_complexity Low_complexity 1 21 0 203 361 93 9 chr11 109730000 109730108 -39053364 - MIR SINE MIR -126 136 20 233 329 215 13 chr11 109730461 109730610 -39052862 + L2 LINE L2 2770 2948 -366 22 80 0 0 chr11 109732472 109732522 -39050950 + AT_rich Low_complexity Low_complexity 1 50 0 347 104 0 0 chr11 109732991 109733039 -39050433 - Alu SINE Alu -11 291 244 219 306 67 90 chr11 109734856 109734918 -39048554 - MIR SINE MIR -62 146 84 2266 104 0 3 chr11 109734918 109735215 -39048257 + AluSq SINE Alu 1 296 -17 219 306 67 90 chr11 109735215 109735286 -39048186 - MIR SINE MIR -124 84 16 2382 81 0 10 chr11 109736198 109736496 -39046976 + AluSg SINE Alu 1 295 -15 312 308 39 10 chr11 109736831 109736935 -39046537 + L2 LINE L2 2255 2361 -953 288 279 132 0 chr11 109736971 109737107 -39046365 - L1ME LINE L1 -649 5517 5364 219 393 49 0 chr11 109737108 109737230 -39046242 + L2 LINE L2 3145 3272 0 298 324 9 9 chr11 109737432 109737540 -39045932 + MIR SINE MIR 4 111 -151 31 26 0 0 chr11 109738129 109738167 -39045305 + AT_rich Low_complexity Low_complexity 1 38 0 5138 77 84 1 chr11 109738172 109738859 -39044613 - L1PA8 LINE L1 -4 6168 5425 530 285 149 18 chr11 109739179 109739400 -39044072 - MIR SINE MIR -6 256 7 420 348 50 20 chr11 109739693 109739992 -39043480 - L2 LINE L2 -676 2638 2331 269 278 0 0 chr11 109740230 109740284 -39043188 + MLT1J1 LTR MaLR 225 278 -168 2047 98 87 0 chr11 109741333 109741620 -39041852 + AluSx SINE Alu 1 312 0 2539 303 39 14 chr11 109742461 109743323 -39040149 + HERV16 LTR ERVL 695 1578 -3418 1466 243 150 29 chr11 109743384 109743501 -39039971 + HERV16 LTR ERVL 1732 1834 -3162 632 188 119 84 chr11 109743501 109743703 -39039769 - MER63A DNA MER1_type -1 209 1 1466 243 150 29 chr11 109743703 109744066 -39039406 + HERV16 LTR ERVL 1834 2270 -2726 323 294 20 55 chr11 109744080 109744226 -39039246 + LTR16B LTR ERVL 127 267 -197 218 322 44 33 chr11 109744369 109744459 -39039013 + L2 LINE L2 3000 3090 -182 1397 182 80 7 chr11 109744589 109744864 -39038608 - AluJb SINE Alu -15 297 3 828 133 33 0 chr11 109744995 109745115 -39038357 + FLAM_C SINE Alu 1 124 -19 249 33 0 0 chr11 109745203 109745233 -39038239 + (TA)n Simple_repeat Simple_repeat 1 30 0 1664 173 61 0 chr11 109745831 109746109 -39037363 - AluJb SINE Alu -17 295 1 246 254 192 39 chr11 109746797 109746927 -39036545 + MIR SINE MIR 103 252 -10 408 307 90 6 chr11 109747010 109747176 -39036296 - MIR SINE MIR -72 190 11 2169 118 0 0 chr11 109748117 109748413 -39035059 + AluSx SINE Alu 1 296 -16 237 230 176 115 chr11 109748849 109749110 -39034362 - MLT1J LTR MaLR -4 507 231 216 263 10 30 chr11 109749739 109749838 -39033634 + T-rich Low_complexity Low_complexity 4 100 0 3470 33 0 0 chr11 109749838 109750228 -39033244 - L1PA2 LINE L1 0 6155 5766 4798 55 8 0 chr11 109750227 109750832 -39032640 - L1P LINE L1 -5536 610 1 1942 130 3 3 chr11 109750836 109751120 -39032352 - L1PA15 LINE L1 -13 6152 5869 38 51 0 0 chr11 109751346 109751405 -39032067 + AT_rich Low_complexity Low_complexity 1 59 0 292 266 38 0 chr11 109751939 109752018 -39031454 + CT-rich Low_complexity Low_complexity 6 87 0 183 195 24 0 chr11 109752021 109752062 -39031410 - L2 LINE L2 -9 3304 3263 406 295 68 26 chr11 109752227 109752417 -39031055 + MIR SINE MIR 65 262 0 27 29 0 0 chr11 109752503 109752537 -39030935 + AT_rich Low_complexity Low_complexity 1 34 0 1003 304 46 37 chr11 109752857 109753400 -39030072 - L1MC4a LINE L1 -1849 5959 5412 2097 192 3 3 chr11 109753434 109753798 -39029674 + MLT1A1 LTR MaLR 1 364 -1 906 321 189 40 chr11 109753998 109754412 -39029060 + L2 LINE L2 1050 1401 -1913 1753 137 88 31 chr11 109754412 109754763 -39028709 + THE1C LTR MaLR 5 375 0 906 321 189 40 chr11 109754763 109755513 -39027959 + L2 LINE L2 1401 2038 -1276 1632 195 0 7 chr11 109755513 109755795 -39027677 - AluJo SINE Alu -32 280 1 906 321 189 40 chr11 109755795 109756220 -39027252 + L2 LINE L2 2038 2877 -437 2914 183 72 34 chr11 109756527 109756948 -39026524 - L1MB7 LINE L1 -15 6169 5712 2148 124 0 0 chr11 109756948 109757247 -39026225 - AluSx SINE Alu -13 299 1 2914 183 72 34 chr11 109757247 109757496 -39025976 - L1MB7 LINE L1 -472 5712 5474 485 198 93 6 chr11 109757502 109757674 -39025798 - L1MB7 LINE L1 -2840 3306 3120 653 297 36 49 chr11 109757674 109758106 -39025366 - LTR35 LTR ERV1 0 556 152 2107 215 76 50 chr11 109758175 109758402 -39025070 - L1MB7 LINE L1 -3023 3123 2903 2076 137 0 28 chr11 109758402 109758723 -39024749 - AluSx SINE Alu 0 312 1 2107 215 76 50 chr11 109758723 109759308 -39024164 - L1MB7 LINE L1 -3243 2903 2290 754 192 99 16 chr11 109759314 109759495 -39023977 - LTR52 LTR ERVL -16 405 210 392 134 15 0 chr11 109759495 109759562 -39023910 + MLT2B3 LTR ERVL 1 68 -486 2172 160 26 128 chr11 109759634 109760204 -39023268 + MLT2B3 LTR ERVL 25 554 0 536 303 183 18 chr11 109760289 109760672 -39022800 + L2 LINE L2 1319 1764 -1550 953 126 7 0 chr11 109760678 109760821 -39022651 + Tigger4(Zombi) DNA MER2_type 2586 2729 -2 14598 170 63 3 chr11 109761133 109761489 -39021983 - L1PB1 LINE L1 -1 6866 6533 288 0 0 0 chr11 109761489 109761521 -39021951 + (TG)n Simple_repeat Simple_repeat 2 33 0 14598 170 63 3 chr11 109761521 109767665 -39015807 - L1PB1 LINE L1 -334 6533 6 259 261 113 26 chr11 109768260 109768375 -39015097 - L2 LINE L2 -52 3261 3137 27 49 0 0 chr11 109769398 109769439 -39014033 + AT_rich Low_complexity Low_complexity 1 41 0 198 150 0 0 chr11 109769480 109769520 -39013952 + (TG)n Simple_repeat Simple_repeat 1 40 0 295 314 34 17 chr11 109769920 109770038 -39013434 - LTR16A LTR ERVL -234 216 97 * 635 151 6 87 chr11 109770030 109770202 -39013270 - MER96B DNA MER1_type? -236 181 24 356 319 57 7 chr11 109770961 109771102 -39012370 - HAL1 LINE L1 -985 1522 1375 565 289 52 66 chr11 109771141 109771378 -39012094 - L1MEd LINE L1 -4930 1189 950 2458 89 8 19 chr11 109771378 109771737 -39011735 + THE1A LTR MaLR 1 355 0 565 289 52 66 chr11 109771737 109771748 -39011724 - L1MEd LINE L1 -5169 950 940 2545 58 0 0 chr11 109771748 109772043 -39011429 - AluY SINE Alu -16 295 1 565 289 52 66 chr11 109772043 109772443 -39011029 - L1MEd LINE L1 -5179 940 549 757 290 79 22 chr11 109772565 109772931 -39010541 - L1MC4 LINE L1 -91 7951 7565 2201 110 7 0 chr11 109772999 109773290 -39010182 + AluSx SINE Alu 1 293 -19 741 178 26 0 chr11 109773302 109773454 -39010018 - L1MA7 LINE L1 -39 6252 6097 254 137 0 0 chr11 109773448 109773499 -39009973 + L1MA7 LINE L1 6241 6291 0 * 215 338 29 0 chr11 109773762 109773830 -39009642 - L3 LINE CR1 -538 1039 970 21 0 0 0 chr11 109773830 109773851 -39009621 + AT_rich Low_complexity Low_complexity 1 21 0 356 338 121 35 chr11 109773916 109774262 -39009210 - L3 LINE CR1 -635 942 567 384 309 22 22 chr11 109774589 109774728 -39008744 - MER5A DNA MER1_type -1 188 50 407 375 59 20 chr11 109775137 109775425 -39008047 - L1ME4a LINE L1 -229 5892 5582 2084 151 0 0 chr11 109775425 109775730 -39007742 - AluSx SINE Alu -7 305 1 407 375 59 20 chr11 109775730 109775849 -39007623 - L1ME4a LINE L1 -539 5582 5469 482 297 27 89 chr11 109776041 109776393 -39007079 - MLT1I LTR MaLR -16 393 94 245 306 93 22 chr11 109776520 109776703 -39006769 + L2 LINE L2 3115 3310 -3 549 219 112 54 chr11 109777273 109777533 -39005939 - ORSL DNA AcHobo 0 275 1 213 154 0 0 chr11 109777748 109777787 -39005685 + (TA)n Simple_repeat Simple_repeat 2 40 0 222 371 0 10 chr11 109777791 109777888 -39005584 - L2 LINE L2 -9 3304 3209 193 163 23 58 chr11 109778186 109778272 -39005200 + GA-rich Low_complexity Low_complexity 4 86 0 245 87 0 22 chr11 109778531 109778577 -39004895 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 2791 30 0 0 chr11 109778577 109778905 -39004567 - L1PA3 LINE L1 -24 6131 5804 22 0 0 0 chr11 109779010 109779032 -39004440 + AT_rich Low_complexity Low_complexity 1 22 0 5465 142 11 0 chr11 109779232 109780488 -39002984 - L1PA13 LINE L1 -6 6157 4834 569 241 89 6 chr11 109781752 109781910 -39001562 - MIR SINE MIR -26 236 66 293 284 130 19 chr11 109782257 109782419 -39001053 - MLT1L LTR MaLR -4 611 432 262 272 190 2 chr11 109782678 109782818 -39000654 - MIR3 SINE MIR -60 148 14 479 242 68 15 chr11 109782950 109783082 -39000390 + MER5B DNA MER1_type 37 175 -3 393 375 22 88 chr11 109783217 109783269 -39000203 + L2 LINE L2 2895 2949 -323 324 0 0 0 chr11 109783269 109783305 -39000167 + (TCTA)n Simple_repeat Simple_repeat 2 37 0 393 375 22 88 chr11 109783305 109783652 -38999820 + L2 LINE L2 2949 3268 -4 12376 82 7 69 chr11 109783761 109785781 -38997691 + L1P LINE L1 3079 4972 -1174 1304 132 4 36 chr11 109785781 109786032 -38997440 - AluY SINE Alu -6 305 63 7015 61 2 1 chr11 109786032 109787222 -38996250 + L1PA7 LINE L1 4957 6154 0 24 32 0 0 chr11 109787222 109787253 -38996219 + AT_rich Low_complexity Low_complexity 1 31 0 180 77 0 0 chr11 109788182 109788208 -38995264 + (TTTTC)n Simple_repeat Simple_repeat 2 27 0 225 211 0 0 chr11 109788309 109788361 -38995111 + (TA)n Simple_repeat Simple_repeat 2 53 0 192 273 0 0 chr11 109788468 109788534 -38994938 + (CATATA)n Simple_repeat Simple_repeat 6 71 0 24 0 0 0 chr11 109790006 109790030 -38993442 + AT_rich Low_complexity Low_complexity 1 24 0 277 122 0 0 chr11 109790271 109790312 -38993160 - MLT2B1 LTR ERVL 0 520 480 21 36 0 0 chr11 109790363 109790391 -38993081 + AT_rich Low_complexity Low_complexity 1 28 0 1567 172 19 0 chr11 109790391 109790659 -38992813 - MLT2D LTR ERVL -141 273 1 330 382 35 12 chr11 109791177 109791347 -38992125 - L2 LINE L2 -409 2905 2732 414 303 86 53 chr11 109791889 109792707 -38990765 + L1MEd LINE L1 487 1257 -4862 313 305 142 66 chr11 109792835 109793137 -38990335 + L1ME LINE L1 145 469 -5736 1757 259 94 24 chr11 109793351 109794060 -38989412 + L1ME3A LINE L1 5403 6161 -9 25 0 0 0 chr11 109794060 109794085 -38989387 + AT_rich Low_complexity Low_complexity 1 25 0 492 313 88 42 chr11 109794087 109794754 -38988718 + L1ME LINE L1 1604 2239 -4157 622 111 10 0 chr11 109794754 109794853 -38988619 + L1PA13 LINE L1 6063 6162 -1 1053 150 0 0 chr11 109794859 109795039 -38988433 + (TA)n Simple_repeat Simple_repeat 1 180 0 492 313 88 42 chr11 109795039 109795205 -38988267 + L1ME LINE L1 2243 2483 -3913 340 284 144 24 chr11 109795394 109795894 -38987578 + L1ME LINE L1 2647 3206 -3009 251 315 140 6 chr11 109796192 109796370 -38987102 - MIR SINE MIR -35 227 26 183 309 0 18 chr11 109797690 109797745 -38985727 + MIR SINE MIR 20 73 -135 207 308 154 10 chr11 109797884 109797988 -38985484 - L2 LINE L2 0 3313 3195 1149 216 7 114 chr11 109798129 109798560 -38984912 - MSTD LTR MaLR -11 385 1 341 333 45 8 chr11 109798578 109798710 -38984762 - L1MEd LINE L1 -4997 1122 986 1826 123 18 32 chr11 109798814 109799155 -38984317 - L1PB4 LINE L1 -220 5936 5601 232 314 92 21 chr11 109799151 109799390 -38984082 - L1MEd LINE L1 -5250 869 614 * 278 361 71 12 chr11 109800046 109800215 -38983257 + L2 LINE L2 2708 2886 -428 227 172 35 69 chr11 109800238 109800296 -38983176 + MLT1L LTR MaLR 20 75 -540 314 302 201 0 chr11 109800356 109800515 -38982957 + MLT1L LTR MaLR 200 390 -225 703 313 184 9 chr11 109800711 109801037 -38982435 + L2 LINE L2 2375 2757 -557 289 269 15 0 chr11 109801099 109801166 -38982306 - MIR SINE MIR -95 113 46 7261 54 77 0 chr11 109802135 109803114 -38980358 - L1PA5 LINE L1 -3634 2512 1459 17883 43 27 8 chr11 109803121 109805434 -38978038 + L1PA5 LINE L1 2514 4871 -1275 7245 39 15 0 chr11 109805440 109806363 -38977109 + L1PA5 LINE L1 5213 6148 -6 537 86 0 0 chr11 109806417 109806487 -38976985 + AluSc SINE Alu 222 291 -18 370 324 98 12 chr11 109807234 109807407 -38976065 + MIR3 SINE MIR 15 202 -6 190 315 0 0 chr11 109807535 109807608 -38975864 + L2 LINE L2 2668 2740 -574 601 203 0 86 chr11 109807620 109807783 -38975689 - MIR SINE MIR -3 259 111 1620 203 3 19 chr11 109808222 109808532 -38974940 - AluJo SINE Alu -7 305 1 2021 149 0 0 chr11 109809467 109809762 -38973710 - AluSx SINE Alu -17 295 1 299 332 30 45 chr11 109810338 109810540 -38972932 - MIR SINE MIR -39 223 25 17787 140 15 87 chr11 109810584 109814470 -38969002 + L1PA7 LINE L1 2 3608 -2538 869 101 0 0 chr11 109814467 109814596 -38968876 - L1P LINE L1 -3177 2969 2841 * 6886 86 19 2 chr11 109814598 109816335 -38967137 + L1PA7 LINE L1 4402 6151 -3 198 264 0 0 chr11 109816359 109816412 -38967060 + L2 LINE L2 3261 3313 0 304 243 0 14 chr11 109816483 109816553 -38966919 - MIR SINE MIR -70 192 124 503 279 35 51 chr11 109816579 109816776 -38966696 - MIR SINE MIR -13 249 56 2007 132 58 25 chr11 109816880 109817243 -38966229 - THE1C LTR MaLR 0 375 1 307 349 47 31 chr11 109818100 109818229 -38965243 - L2 LINE L2 -5 3267 3137 271 236 9 9 chr11 109818513 109818623 -38964849 + CT-rich Low_complexity Low_complexity 1 110 0 340 308 8 43 chr11 109819767 109819884 -38963588 + L2 LINE L2 3200 3312 -1 801 182 0 0 chr11 109820452 109820600 -38962872 - L1 LINE L1 -1095 5051 4904 29 47 0 0 chr11 109820779 109820822 -38962650 + AT_rich Low_complexity Low_complexity 1 43 0 7003 186 37 43 chr11 109820838 109823045 -38960427 - L1MA3 LINE L1 0 6305 4087 409 89 0 0 chr11 109823045 109823101 -38960371 + THE1C LTR MaLR 1 56 -372 899 112 8 8 chr11 109823109 109823243 -38960229 + THE1C LTR MaLR 242 375 0 7003 186 37 43 chr11 109823243 109823782 -38959690 - L1MA3 LINE L1 -2225 4080 3466 1744 149 182 11 chr11 109823782 109824144 -38959328 - MSTA LTR MaLR -4 424 1 7003 186 37 43 chr11 109824144 109824536 -38958936 - L1MA3 LINE L1 -2839 3466 3073 255 330 9 45 chr11 109824574 109824674 -38958798 + MIR SINE MIR 1 98 -164 2059 116 3 26 chr11 109824674 109824985 -38958487 - AluSc SINE Alu -5 304 1 255 330 9 45 chr11 109824985 109824996 -38958476 + MIR SINE MIR 98 108 -154 188 354 24 24 chr11 109826230 109826312 -38957160 - MIR SINE MIR -103 105 24 2029 149 0 9 chr11 109826530 109826845 -38956627 - AluSx SINE Alu 0 312 1 483 286 27 32 chr11 109827377 109827562 -38955910 - MIR3 SINE MIR -7 201 18 381 214 29 100 chr11 109828238 109828378 -38955094 + L2 LINE L2 3179 3308 -5 471 279 18 0 chr11 109828397 109828508 -38954964 - MER81 DNA DNA 0 114 2 21 0 0 0 chr11 109829250 109829271 -38954201 + AT_rich Low_complexity Low_complexity 1 21 0 242 264 109 59 chr11 109829312 109829500 -38953972 - L1MC/D LINE L1 -403 5758 5671 802 296 113 26 chr11 109829681 109830060 -38953412 - L2 LINE L2 0 3313 2902 311 296 42 79 chr11 109830062 109830278 -38953194 - L1MC/D LINE L1 -769 5377 5170 323 342 63 6 chr11 109830835 109830993 -38952479 - MER5B DNA MER1_type -5 173 7 681 239 80 30 chr11 109832350 109832614 -38950858 + LTR16A1 LTR ERVL 173 449 -8 208 427 104 29 chr11 109832818 109833134 -38950338 + L2 LINE L2 2933 3272 0 403 295 38 0 chr11 109833375 109833480 -38949992 + L2 LINE L2 3148 3256 -16 1241 122 5 0 chr11 109833539 109833727 -38949745 + L1PB4 LINE L1 5964 6152 -4 244 302 66 28 chr11 109834029 109834135 -38949337 + L2 LINE L2 3155 3264 -8 22 0 0 0 chr11 109834932 109834954 -38948518 + AT_rich Low_complexity Low_complexity 1 22 0 2102 117 0 0 chr11 109835190 109835471 -38948001 + AluSx SINE Alu 1 281 -31 423 0 0 0 chr11 109835478 109835525 -38947947 + (CA)n Simple_repeat Simple_repeat 2 48 0 494 321 19 0 chr11 109835662 109835821 -38947651 + MIR3 SINE MIR 45 206 -2 731 258 72 0 chr11 109836191 109836400 -38947072 - MIR SINE MIR -1 261 38 5338 151 9 6 chr11 109836641 109838177 -38945295 + L1PB4 LINE L1 4611 6150 -6 298 283 121 20 chr11 109838417 109838516 -38944956 - L2 LINE L2 -6 3266 3158 21 0 0 0 chr11 109838771 109838792 -38944680 + AT_rich Low_complexity Low_complexity 1 21 0 334 236 67 11 chr11 109839757 109839846 -38943626 - MIR3 SINE MIR -7 201 108 268 191 17 113 chr11 109840005 109840075 -38943397 - L1MA8 LINE L1 -4 6287 6231 2163 86 3 33 chr11 109840075 109840378 -38943094 + AluSq SINE Alu 1 294 -19 268 191 17 113 chr11 109840378 109840422 -38943050 - L1MA8 LINE L1 -60 6231 6184 285 280 0 0 chr11 109840458 109840533 -38942939 + (TA)n Simple_repeat Simple_repeat 1 75 0 1888 122 36 7 chr11 109840817 109841120 -38942352 + AluSx SINE Alu 1 312 0 187 372 63 58 chr11 109841738 109842353 -38941119 + L2 LINE L2 2218 2835 -479 * 489 292 56 0 chr11 109842343 109842487 -38940985 + MIR SINE MIR 106 257 -5 242 348 110 46 chr11 109842504 109842941 -38940531 + L2 LINE L2 2835 3299 -14 191 36 36 0 chr11 109842944 109842972 -38940500 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 192 40 0 0 chr11 109845250 109845275 -38938197 + (GA)n Simple_repeat Simple_repeat 2 26 0 428 79 0 0 chr11 109845395 109845458 -38938014 - Alu SINE Alu -10 301 239 207 286 11 55 chr11 109845646 109845737 -38937735 - L2 LINE L2 0 3313 3227 3746 259 79 16 chr11 109845882 109847298 -38936174 + L1MEc LINE L1 30 1479 -4736 361 257 118 18 chr11 109847392 109847560 -38935912 + MIR SINE MIR 30 212 -50 219 151 19 38 chr11 109847594 109847647 -38935825 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 6694 174 22 42 chr11 109847900 109850351 -38933121 - L1PA15 LINE L1 -3 6162 3771 4964 179 39 2 chr11 109850430 109851299 -38932173 - MER54A LTR ERVL 0 901 9 251 295 48 38 chr11 109851328 109851433 -38932039 - L3 LINE CR1 -35 1542 1437 304 292 0 14 chr11 109851519 109851591 -38931881 + MIR SINE MIR 1 71 -191 229 354 0 0 chr11 109852200 109852296 -38931176 + MIR SINE MIR 124 219 -43 1959 154 20 46 chr11 109853087 109853432 -38930040 + MER1B DNA MER1_type 1 336 -1 274 268 52 10 chr11 109854135 109854232 -38929240 - L2 LINE L2 -3 3310 3210 296 313 40 30 chr11 109854272 109854371 -38929101 - MIR SINE MIR -156 106 7 305 239 110 18 chr11 109857143 109857252 -38926220 + L1ME4a LINE L1 5999 6117 -4 561 13 0 13 chr11 109858195 109858291 -38925181 - L1PA3 LINE L1 0 6155 6082 281 323 40 0 chr11 109858506 109858630 -38924842 + MER94 DNA DNA 4 132 -2 22 0 0 0 chr11 109858769 109858791 -38924681 + AT_rich Low_complexity Low_complexity 1 22 0 19876 166 28 19 chr11 109859067 109862148 -38921324 + L1M1 LINE L1 14 3068 -4497 2492 104 27 33 chr11 109862148 109862514 -38920958 + THE1B LTR MaLR 1 364 0 11723 94 5 0 chr11 109862514 109864085 -38919387 + THE1B-int LTR MaLR 2 1580 0 1623 116 42 141 chr11 109864085 109864415 -38919057 + THE1B LTR MaLR 1 285 -79 1604 134 0 5 chr11 109864415 109864638 -38918834 - AluSc SINE Alu -21 288 67 1623 116 42 141 chr11 109864638 109864711 -38918761 + THE1B LTR MaLR 285 364 0 19876 166 28 19 chr11 109864711 109866219 -38917253 + L1M1 LINE L1 3068 4658 -2907 2256 98 7 0 chr11 109866219 109866505 -38916967 + AluSq SINE Alu 1 288 -25 19876 166 28 19 chr11 109866505 109867393 -38916079 + L1M1 LINE L1 4658 5537 -2028 9087 210 22 6 chr11 109867389 109869623 -38913849 + L1M4 LINE L1 2683 4953 -1193 * 21 0 0 31 chr11 109869624 109869641 -38913831 + AT_rich Low_complexity Low_complexity 1 18 -13 2218 65 31 0 chr11 109869641 109869935 -38913537 + L1PB1 LINE L1 5848 6150 -1 21 0 0 31 chr11 109869935 109869949 -38913523 + AT_rich Low_complexity Low_complexity 18 31 0 287 126 146 39 chr11 109869959 109870062 -38913410 + L1M4 LINE L1 5185 5298 -848 229 143 0 0 chr11 109870061 109870103 -38913369 + L1MA9 LINE L1 6270 6311 -1 * 199 271 17 17 chr11 109871004 109871063 -38912409 + MIR SINE MIR 53 111 -151 2134 92 4 4 chr11 109871353 109871671 -38911801 + AluY SINE Alu 1 318 0 625 149 43 7 chr11 109871983 109872124 -38911348 - L1P LINE L1 -2136 4010 3865 388 138 0 117 chr11 109872126 109872220 -38911252 - L1MA9 LINE L1 -116 6196 6114 498 264 110 18 chr11 109872315 109872478 -38910994 + MIR SINE MIR 8 185 -77 22 0 0 0 chr11 109872498 109872520 -38910952 + AT_rich Low_complexity Low_complexity 1 22 0 1972 186 3 19 chr11 109873188 109873559 -38909913 - MLT1A1 LTR MaLR 0 365 1 21 0 0 0 chr11 109874338 109874359 -38909113 + AT_rich Low_complexity Low_complexity 1 21 0 1113 197 33 5 chr11 109874774 109874987 -38908485 + MER20 DNA MER1_type 1 219 0 212 329 0 27 chr11 109875906 109875979 -38907493 - L2 LINE L2 -20 3252 3182 353 291 114 39 chr11 109876017 109876271 -38907201 + L2 LINE L2 2480 2752 -562 452 286 154 72 chr11 109876370 109877066 -38906406 - L1M4 LINE L1 -2721 3425 2673 184 150 0 75 chr11 109877190 109877230 -38906242 - L2 LINE L2 -2501 813 777 279 331 102 36 chr11 109877284 109877450 -38906022 - L2 LINE L2 -2821 493 317 485 214 38 15 chr11 109877464 109877595 -38905877 - MER94 DNA DNA 0 134 1 618 330 139 52 chr11 109877729 109878247 -38905225 + L2 LINE L2 1385 1857 -1457 2126 193 124 82 chr11 109878247 109879040 -38904432 + LTR1B LTR ERV1 1 826 0 618 330 139 52 chr11 109879040 109879820 -38903652 + L2 LINE L2 1857 2796 -518 22 35 0 0 chr11 109881195 109881224 -38902248 + AT_rich Low_complexity Low_complexity 1 29 0 930 148 64 10 chr11 109881251 109881453 -38902019 - L1MA5 LINE L1 0 6300 6088 5971 95 22 9 chr11 109881453 109882384 -38901088 + L1PA14 LINE L1 5219 6161 0 599 178 27 7 chr11 109882395 109882541 -38900931 - L1MA5 LINE L1 -207 6093 5945 245 293 31 29 chr11 109932541 109932611 -38850861 + MIR SINE MIR 75 143 -69 227 141 62 0 chr11 109933085 109933149 -38850323 + (TA)n Simple_repeat Simple_repeat 1 68 0 3487 128 2 20 chr11 109933212 109933749 -38849723 - MER1A DNA MER1_type 0 527 1 277 325 48 53 chr11 109934367 109934573 -38848899 + L3 LINE CR1 380 584 -993 224 69 103 0 chr11 109934622 109934680 -38848792 + T-rich Low_complexity Low_complexity 3 66 0 418 330 125 53 chr11 109934803 109935372 -38848100 + L1 LINE L1 3882 4491 -1655 367 23 41 0 chr11 109935884 109935962 -38847510 + AluY SINE Alu 233 308 0 1162 236 13 0 chr11 109935962 109936272 -38847200 + L1 LINE L1 2777 3090 -3056 26930 54 6 1 chr11 109936373 109940601 -38842871 + L1PA6 LINE L1 1900 6149 -5 2667 147 34 23 chr11 109940620 109941186 -38842286 + L1P LINE L1 2995 3566 -2580 6593 175 33 7 chr11 109941288 109942635 -38840837 + L1 LINE L1 3289 4671 -1475 357 125 94 0 chr11 109942635 109942699 -38840773 + MLT2B3 LTR ERVL 1 70 -484 1970 216 45 39 chr11 109942782 109943249 -38840223 + MLT2B3 LTR ERVL 70 539 -15 1024 139 0 0 chr11 109943249 109943421 -38840051 + L1 LINE L1 4660 4831 -1315 26 0 0 0 chr11 109943421 109943447 -38840025 + AT_rich Low_complexity Low_complexity 1 26 0 356 206 75 0 chr11 109943542 109943659 -38839813 - L1MC4a LINE L1 -811 6997 6888 240 114 45 0 chr11 109943675 109943719 -38839753 - L1MC4a LINE L1 -1951 5857 5812 594 288 24 12 chr11 109943755 109943925 -38839547 + MER58A DNA MER1_type 1 172 -52 484 272 23 46 chr11 109943973 109944094 -38839378 - L1MC4a LINE L1 -2028 5780 5663 2443 90 34 8 chr11 109944094 109944449 -38839023 + THE1B LTR MaLR 1 364 0 484 272 23 46 chr11 109944449 109944500 -38838972 - L1MC4a LINE L1 -2145 5663 5612 331 264 23 8 chr11 109944661 109944790 -38838682 - L1ME LINE L1 -5066 1004 874 321 209 76 0 chr11 109944922 109945027 -38838445 - L1ME LINE L1 -5282 788 676 1614 82 5 0 chr11 109947535 109947743 -38835729 - AluSp SINE Alu -5 308 100 3192 86 25 25 chr11 109947764 109948252 -38835220 + L1MA3 LINE L1 5818 6305 0 1197 298 98 31 chr11 109948278 109948609 -38834863 - L1ME LINE L1 -5442 628 242 2376 51 24 7 chr11 109948609 109948903 -38834569 - AluY SINE Alu -12 299 1 1197 298 98 31 chr11 109948903 109949142 -38834330 - L1ME LINE L1 -5828 242 20 239 243 149 20 chr11 109949155 109949303 -38834169 + L1MDa LINE L1 1689 1855 -4685 456 329 86 27 chr11 109949384 109950268 -38833204 - L1MC4a LINE L1 -1108 5038 4103 561 299 73 33 chr11 109950290 109950771 -38832701 + L1MDa LINE L1 3611 4110 -2430 377 246 57 16 chr11 109950989 109951111 -38832361 + MLT1H LTR MaLR 25 151 -398 754 328 80 32 chr11 109951170 109951570 -38831902 + L2 LINE L2 2881 3299 -14 22 70 0 0 chr11 109952001 109952044 -38831428 + AT_rich Low_complexity Low_complexity 1 43 0 252 275 29 0 chr11 109952896 109952965 -38830507 - L2 LINE L2 -9 3263 3193 2975 119 35 62 chr11 109953365 109953929 -38829543 + LTR8 LTR ERV1 32 580 -111 378 0 0 0 chr11 109953930 109953972 -38829500 + (CA)n Simple_repeat Simple_repeat 1 42 0 324 295 78 12 chr11 109954990 109955234 -38828238 - L1ME4a LINE L1 -75 6046 5787 386 288 27 55 chr11 109955491 109955637 -38827835 - L2 LINE L2 -201 3071 2930 304 353 189 0 chr11 109955955 109956156 -38827316 - L3 LINE CR1 -975 602 364 675 221 97 14 chr11 109957017 109957162 -38826310 - FAM SINE Alu -18 157 1 266 330 43 17 chr11 109957775 109957890 -38825582 + MIR3 SINE MIR 81 198 -10 23 33 0 0 chr11 109957972 109958002 -38825470 + AT_rich Low_complexity Low_complexity 1 30 0 1806 158 29 0 chr11 109959557 109959868 -38823604 - MER7A DNA MER2_type -28 318 1 2367 78 0 0 chr11 109960069 109960352 -38823120 + AluSg SINE Alu 11 293 -17 22 0 0 0 chr11 109960854 109960876 -38822596 + AT_rich Low_complexity Low_complexity 1 22 0 244 301 65 0 chr11 109961908 109962001 -38821471 - L2 LINE L2 -16 3256 3158 2164 121 0 0 chr11 109962256 109962537 -38820935 + AluSx SINE Alu 1 281 -31 280 231 102 89 chr11 109962651 109962716 -38820756 - L1MDa LINE L1 -4796 1284 1221 2140 121 0 3 chr11 109962716 109963013 -38820459 - AluSg SINE Alu -14 296 1 280 231 102 89 chr11 109963013 109963250 -38820222 - L1MDa LINE L1 -4859 1221 978 366 187 15 157 chr11 109963262 109963460 -38820012 - L1MDa LINE L1 -5102 968 799 15163 161 80 36 chr11 109963470 109966662 -38816810 - L1MA2 LINE L1 0 7723 4672 2056 155 0 3 chr11 109966662 109966971 -38816501 - AluSx SINE Alu -4 308 1 15163 161 80 36 chr11 109966971 109967079 -38816393 - L1MA2 LINE L1 -3051 4672 4570 2268 110 0 19 chr11 109967079 109967387 -38816085 - AluSg SINE Alu -8 302 1 15163 161 80 36 chr11 109967387 109968557 -38814915 - L1MA2 LINE L1 -3153 4570 3452 5872 110 52 0 chr11 109968557 109969673 -38813799 - L1PA11 LINE L1 -7 6167 5023 15163 161 80 36 chr11 109969673 109972559 -38810913 - L1MA2 LINE L1 -4271 3452 17 545 234 57 83 chr11 109972602 109972867 -38810605 - LTR41 LTR ERVL -10 763 506 230 286 0 66 chr11 109973052 109973143 -38810329 - LTR41 LTR ERVL -586 187 103 1208 181 15 15 chr11 109973143 109973348 -38810124 + AluJo SINE Alu 87 291 -21 240 260 104 0 chr11 109973369 109973465 -38810007 - LTR50 LTR ERVL -682 113 8 532 242 55 35 chr11 109973465 109973721 -38809751 - L1MDa LINE L1 -5306 764 504 626 272 35 64 chr11 109973876 109974299 -38809173 - L1MDa LINE L1 -5545 525 115 268 273 116 65 chr11 109975417 109975692 -38807780 - L1ME LINE L1 -326 5795 5507 639 266 61 26 chr11 109975745 109975974 -38807498 - MIR SINE MIR -8 254 18 1948 320 97 22 chr11 109976046 109976949 -38806523 + L2 LINE L2 2003 3014 -299 996 159 67 29 chr11 109976949 109977157 -38806315 + MER20 DNA MER1_type 1 216 -3 1948 320 97 22 chr11 109977157 109977431 -38806041 + L2 LINE L2 3014 3266 -47 1673 154 3 82 chr11 109979247 109979565 -38803907 - AluJb SINE Alu -19 293 1 234 0 0 0 chr11 109979574 109979600 -38803872 + (T)n Simple_repeat Simple_repeat 1 26 0 2125 226 43 31 chr11 109979706 109980289 -38803183 + MLT1E LTR MaLR 4 593 0 319 308 197 17 chr11 109982520 109982637 -38800835 - MER5A DNA MER1_type -42 147 10 21 0 0 0 chr11 109984149 109984170 -38799302 + AT_rich Low_complexity Low_complexity 1 21 0 41997 41 4 3 chr11 109984850 109990998 -38792474 - L1PA3 LINE L1 -3 6152 2 244 217 12 12 chr11 109991660 109991743 -38791729 + CT-rich Low_complexity Low_complexity 1 83 0 241 297 219 0 chr11 109991815 109991930 -38791542 + MIR SINE MIR 19 152 -65 303 28 0 0 chr11 109992985 109993021 -38790451 + (TG)n Simple_repeat Simple_repeat 2 37 0 225 344 98 16 chr11 109993151 109993273 -38790199 + L3 LINE CR1 140 271 -1306 545 198 60 0 chr11 109993648 109993764 -38789708 + L2 LINE L2 1705 1827 -1487 662 209 22 0 chr11 109993767 109993901 -38789571 - MER45A DNA AcHobo -2 176 40 3473 254 61 31 chr11 109993908 109994185 -38789287 + L2 LINE L2 1815 2082 -1231 1289 215 196 30 chr11 109994185 109994618 -38788854 + MLT1D LTR MaLR 1 505 0 3473 254 61 31 chr11 109994618 109995785 -38787687 + L2 LINE L2 2082 3308 -5 1950 181 50 10 chr11 109995944 109996342 -38787130 + L1PB4 LINE L1 5737 6150 -6 965 200 38 0 chr11 109996454 109996639 -38786833 + MER20 DNA MER1_type 8 199 -20 1252 268 38 13 chr11 109996641 109996698 -38786774 - L1MEc LINE L1 -3457 2758 2704 2388 111 11 3 chr11 109996698 109997050 -38786422 - THE1A LTR MaLR 0 355 1 1252 268 38 13 chr11 109997050 109997626 -38785846 - L1MEc LINE L1 -3511 2704 2155 1853 210 38 101 chr11 109997672 109998083 -38785389 + MLT1E1 LTR MaLR 1 245 -310 1957 178 25 11 chr11 109998083 109998443 -38785029 + MLT1A1 LTR MaLR 1 365 0 1853 210 38 101 chr11 109998443 109998697 -38784775 + MLT1E1 LTR MaLR 245 513 -42 376 308 25 0 chr11 109998706 109998826 -38784646 - MIR SINE MIR -137 125 3 1627 193 33 3 chr11 109999679 109999980 -38783492 - AluJo SINE Alu -2 310 1 318 269 103 7 chr11 110000157 110000293 -38783179 - MIR SINE MIR -65 143 22 8304 56 1 0 chr11 110001501 110002466 -38781006 + LTR5 LTR ERVK 1 966 -3 40316 83 7 8 chr11 110002469 110009903 -38773569 + HERVK LTR ERVK 1 7305 -112 417 74 11 168 chr11 110009903 110009998 -38773474 + SVA Other Other 857 936 -450 8217 54 1 0 chr11 110009998 110010963 -38772509 + LTR5 LTR ERVK 1 966 -3 371 282 92 49 chr11 110011138 110011301 -38772171 - MIR SINE MIR -70 192 23 430 277 80 60 chr11 110011336 110011585 -38771887 + MLT1L LTR MaLR 3 256 -359 2030 167 20 105 chr11 110011646 110012143 -38771329 + LTR32 LTR ERVL 13 467 -4 305 313 106 23 chr11 110012192 110012448 -38771024 + MLT1L LTR MaLR 331 607 -8 21 82 0 0 chr11 110012957 110013006 -38770466 + AT_rich Low_complexity Low_complexity 1 49 0 421 200 0 0 chr11 110013417 110013492 -38769980 + THE1B LTR MaLR 289 363 -1 11246 98 11 8 chr11 110013493 110015068 -38768404 + THE1B-int LTR MaLR 1 1580 0 2040 117 91 24 chr11 110015068 110015409 -38768063 + THE1B LTR MaLR 1 364 0 1974 180 128 46 chr11 110015489 110015966 -38767506 - MLT2B1 LTR ERVL 0 520 5 639 293 106 61 chr11 110016435 110016943 -38766529 + L1MEd LINE L1 573 1103 -5016 8795 171 17 28 chr11 110016968 110019094 -38764378 + L1PA16 LINE L1 3240 5387 -779 1843 155 26 57 chr11 110019094 110019481 -38763991 - THE1C LTR MaLR 0 375 1 8795 171 17 28 chr11 110019481 110020158 -38763314 + L1PA16 LINE L1 5387 6017 -149 2356 115 36 17 chr11 110020158 110020515 -38762957 - THE1B LTR MaLR 0 364 1 8795 171 17 28 chr11 110020515 110020659 -38762813 + L1PA16 LINE L1 6017 6161 -5 667 320 46 13 chr11 110020811 110021205 -38762267 + L1ME3A LINE L1 5550 5956 -214 2628 196 81 33 chr11 110021841 110022496 -38760976 + L1MB7 LINE L1 5443 6136 -48 2281 108 3 0 chr11 110022496 110022803 -38760669 + AluSq SINE Alu 1 308 -5 2628 196 81 33 chr11 110022803 110022852 -38760620 + L1MB7 LINE L1 6136 6181 -3 756 281 170 14 chr11 110023090 110023532 -38759940 + LTR33A LTR ERVL 2 512 -11 283 344 89 78 chr11 110024260 110024725 -38758747 - L2 LINE L2 -5 3267 2799 257 315 103 56 chr11 110024951 110025164 -38758308 + MIR SINE MIR 3 225 -37 243 238 32 0 chr11 110025359 110025422 -38758050 + L2 LINE L2 3249 3313 0 930 283 67 27 chr11 110025886 110026257 -38757215 + LTR16C LTR ERVL 88 473 -18 181 233 0 0 chr11 110026350 110026380 -38757092 - L2 LINE L2 -219 3053 3024 189 0 0 0 chr11 110026492 110026513 -38756959 + (A)n Simple_repeat Simple_repeat 1 21 0 572 350 32 45 chr11 110026513 110026953 -38756519 - L2 LINE L2 -237 3035 2594 464 354 34 5 chr11 110026958 110027164 -38756308 + MIR SINE MIR 17 228 -34 253 345 59 0 chr11 110027900 110028019 -38755453 + L3 LINE CR1 1344 1469 -108 426 271 14 35 chr11 110028209 110028353 -38755119 + MER20B DNA MER1_type 1 141 -642 21 0 0 0 chr11 110029097 110029118 -38754354 + AT_rich Low_complexity Low_complexity 1 21 0 1630 217 25 8 chr11 110029341 110029700 -38753772 + MLT1A1 LTR MaLR 1 365 0 385 260 31 10 chr11 110030188 110030284 -38753188 - LTR33 LTR ERVL 0 521 424 39 38 0 0 chr11 110030636 110030689 -38752783 + AT_rich Low_complexity Low_complexity 1 53 0 325 341 14 42 chr11 110031056 110031270 -38752202 + L1ME4a LINE L1 4384 4591 -1555 273 279 141 30 chr11 110031509 110031771 -38751701 + L1ME4a LINE L1 5730 6020 -101 293 225 20 8 chr11 110032178 110032427 -38751045 + GA-rich Low_complexity Low_complexity 1 252 0 21 36 0 0 chr11 110032698 110032726 -38750746 + AT_rich Low_complexity Low_complexity 1 28 0 500 306 47 24 chr11 110032847 110033017 -38750455 + MIR3 SINE MIR 4 177 -31 28 29 0 0 chr11 110033194 110033229 -38750243 + AT_rich Low_complexity Low_complexity 1 35 0 193 323 133 19 chr11 110034025 110034183 -38749289 + MIR SINE MIR 20 195 -67 1781 158 4 4 chr11 110034431 110034704 -38748768 + AluJo SINE Alu 23 295 -17 1196 123 12 0 chr11 110034901 110035064 -38748408 + AluSg/x SINE Alu 127 291 -19 216 278 19 0 chr11 110035381 110035435 -38748037 + MIR3 SINE MIR 121 175 -33 3926 208 61 26 chr11 110035572 110037383 -38746089 - L1MB8 LINE L1 -2 6176 4296 21 71 0 0 chr11 110037411 110037453 -38746019 + AT_rich Low_complexity Low_complexity 1 42 0 251 302 43 26 chr11 110037946 110038062 -38745410 + MER103 DNA DNA 11 128 -38 29 28 0 0 chr11 110039139 110039175 -38744297 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr11 110039481 110039504 -38743968 + AT_rich Low_complexity Low_complexity 1 23 0 392 207 73 0 chr11 110039516 110039598 -38743874 + L2 LINE L2 3226 3313 0 2333 112 0 0 chr11 110039715 110040019 -38743453 + AluSx SINE Alu 1 304 -8 1479 130 21 18 chr11 110040239 110040523 -38742949 + L1MA8 LINE L1 6007 6291 0 1498 122 0 26 chr11 110040683 110040912 -38742560 + AluSc SINE Alu 35 257 -52 887 262 119 6 chr11 110041118 110041461 -38742011 + LTR33A LTR ERVL 138 519 -4 258 269 193 12 chr11 110041480 110041651 -38741821 - MIR SINE MIR -20 242 41 831 246 116 45 chr11 110043311 110043795 -38739677 + LTR33A LTR ERVL 4 521 -2 311 197 0 0 chr11 110044023 110044094 -38739378 - L1MA7 LINE L1 0 6291 6221 180 0 0 0 chr11 110045114 110045134 -38738338 + (A)n Simple_repeat Simple_repeat 1 20 0 204 259 0 35 chr11 110046134 110046192 -38737280 - MIR SINE MIR -95 167 112 1961 144 14 23 chr11 110046282 110046628 -38736844 - MER61A LTR ERV1 0 343 1 482 288 97 9 chr11 110046916 110047142 -38736330 + MIR SINE MIR 1 246 -16 308 251 82 18 chr11 110047223 110047353 -38736119 - MIR SINE MIR -65 143 16 1898 236 48 19 chr11 110047432 110047911 -38735561 - MER41E LTR ERV1 -7 505 13 1980 128 20 7 chr11 110047929 110048225 -38735247 - AluSc SINE Alu -9 300 1 299 327 163 0 chr11 110048404 110048557 -38734915 - MIR SINE MIR -1 261 84 313 296 130 9 chr11 110048643 110048751 -38734721 + MIR SINE MIR 118 238 -24 402 303 42 104 chr11 110049177 110049484 -38733988 - L2 LINE L2 0 3272 2985 269 351 69 86 chr11 110050239 110050587 -38732885 - L2 LINE L2 -14 3258 2917 1421 165 85 33 chr11 110050619 110050891 -38732581 + AluJo SINE Alu 1 286 -26 221 0 35 0 chr11 110050908 110050937 -38732535 + (TAGA)n Simple_repeat Simple_repeat 3 32 0 647 104 24 16 chr11 110050943 110051068 -38732404 + GA-rich Low_complexity Low_complexity 4 129 0 345 337 43 21 chr11 110051207 110051394 -38732078 - L2 LINE L2 -2497 817 627 340 286 88 34 chr11 110051708 110051855 -38731617 + MIR SINE MIR 108 262 0 202 287 48 54 chr11 110051920 110052087 -38731385 + L2 LINE L2 1596 1761 -1553 966 136 0 0 chr11 110052128 110052260 -38731212 + FRAM SINE Alu 2 133 -43 201 74 0 0 chr11 110052262 110052289 -38731183 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 221 371 91 11 chr11 110052340 110052515 -38730957 + L2 LINE L2 1836 2024 -1290 192 349 16 0 chr11 110052540 110052603 -38730869 + L2 LINE L2 3245 3308 -5 884 301 40 21 chr11 110053621 110053996 -38729476 - LTR16A LTR ERVL -5 445 64 22 0 0 0 chr11 110054855 110054877 -38728595 + AT_rich Low_complexity Low_complexity 1 22 0 240 352 77 60 chr11 110054982 110055164 -38728308 + L2 LINE L2 3084 3268 -4 187 288 96 0 chr11 110055437 110055510 -38727962 + MIR SINE MIR 183 262 0 807 332 92 15 chr11 110055824 110056282 -38727190 - LTR33 LTR ERVL -28 493 1 23 0 0 0 chr11 110057073 110057096 -38726376 + AT_rich Low_complexity Low_complexity 1 23 0 2189 95 7 0 chr11 110057351 110057647 -38725825 - MLT2A2 LTR ERVL -155 298 1 559 255 59 19 chr11 110057647 110057815 -38725657 - L1ME2 LINE L1 -83 6081 5921 1982 119 7 4 chr11 110057815 110058137 -38725335 + AluSg1 SINE Alu 1 323 0 559 255 59 19 chr11 110058137 110059069 -38724403 - L1ME2 LINE L1 -243 5921 4736 338 272 99 56 chr11 110059234 110059396 -38724076 - L2 LINE L2 -13 3300 3132 672 332 81 16 chr11 110059554 110059949 -38723523 - L2 LINE L2 -252 3061 2649 2651 230 111 26 chr11 110060167 110060863 -38722609 + L1M2b LINE L1 3 757 -6452 2848 233 81 39 chr11 110060902 110061859 -38721613 + L1M2b LINE L1 1425 2421 -4788 1138 124 30 0 chr11 110062050 110062251 -38721221 + L1MA4 LINE L1 6088 6294 -6 279 54 0 0 chr11 110062620 110062657 -38720815 + (TG)n Simple_repeat Simple_repeat 1 37 0 180 0 0 0 chr11 110062656 110062676 -38720796 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 21 0 0 0 chr11 110062892 110062913 -38720559 + AT_rich Low_complexity Low_complexity 1 21 0 367 268 61 10 chr11 110063483 110063681 -38719791 + L1M2b LINE L1 4037 4244 -2964 312 301 121 29 chr11 110063865 110064038 -38719434 + L1M2b LINE L1 4488 4676 -2532 10050 218 38 35 chr11 110064085 110067262 -38716210 + L1PA10 LINE L1 4 3321 -3140 38098 80 16 7 chr11 110067265 110073340 -38710132 + L1PA6 LINE L1 15 6149 -5 13796 140 11 14 chr11 110073359 110075829 -38707643 + L1PA10 LINE L1 3310 5787 -696 1728 157 7 25 chr11 110075829 110076109 -38707363 + AluSx SINE Alu 1 275 -37 330 45 0 0 chr11 110076113 110076157 -38707315 + (GAAAA)n Simple_repeat Simple_repeat 1 44 0 13796 140 11 14 chr11 110076157 110076812 -38706660 + L1PA10 LINE L1 5790 6464 -19 324 278 0 0 chr11 110076882 110076979 -38706493 + L1M2b LINE L1 4858 4954 -2254 1777 170 94 0 chr11 110076984 110077314 -38706158 + MER47A DNA MER2_type 6 366 0 312 253 11 11 chr11 110077319 110077414 -38706058 + L1M2b LINE L1 4960 5054 -2154 426 132 0 0 chr11 110077435 110077503 -38705969 - AluS SINE Alu -12 297 230 1421 286 45 38 chr11 110077526 110078317 -38705155 + L1M2b LINE L1 5112 5908 -1300 332 197 15 15 chr11 110078317 110078449 -38705023 + (TA)n Simple_repeat Simple_repeat 1 132 0 1586 65 18 9 chr11 110078515 110078732 -38704740 + L1PA11 LINE L1 5948 6166 -8 724 272 45 19 chr11 110078742 110079051 -38704421 + L1M2b LINE L1 5952 6268 -940 912 317 124 18 chr11 110079946 110080391 -38703081 - L2 LINE L2 -783 2531 2040 49 72 0 22 chr11 110080622 110080760 -38702712 + AT_rich Low_complexity Low_complexity 1 135 0 1668 243 44 88 chr11 110081198 110081765 -38701707 + MLT1F1 LTR MaLR 1 567 0 7531 203 81 16 chr11 110081803 110083812 -38699660 + L1 LINE L1 2385 4523 -1623 526 174 11 0 chr11 110083812 110083904 -38699568 + MLT2B1 LTR ERVL 5 97 -423 421 232 144 39 chr11 110083949 110084234 -38699238 - L1MEc LINE L1 -4183 2213 1899 904 249 68 45 chr11 110084291 110084672 -38698800 - L1MEc LINE L1 -4603 1793 1404 2123 121 0 3 chr11 110084681 110084978 -38698494 - AluSg SINE Alu -14 296 1 231 61 0 0 chr11 110085617 110085650 -38697822 + (GA)n Simple_repeat Simple_repeat 1 33 0 3351 152 45 9 chr11 110085650 110086222 -38697250 + MER7C DNA MER2_type 8 600 -2 309 26 0 0 chr11 110086222 110086260 -38697212 + (TG)n Simple_repeat Simple_repeat 1 38 0 23 0 0 0 chr11 110086808 110086831 -38696641 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr11 110088458 110088480 -38694992 + (A)n Simple_repeat Simple_repeat 1 22 0 519 283 19 3 chr11 110088492 110088705 -38694767 + L1ME3A LINE L1 5747 5914 -264 23 0 0 0 chr11 110088722 110088745 -38694727 + AT_rich Low_complexity Low_complexity 1 23 0 198 103 0 0 chr11 110088915 110088944 -38694528 + (TA)n Simple_repeat Simple_repeat 1 29 0 38 0 0 0 chr11 110088977 110089015 -38694457 + AT_rich Low_complexity Low_complexity 1 38 0 261 316 76 0 chr11 110089131 110089210 -38694262 - L2 LINE L2 -45 3227 3143 1995 124 0 11 chr11 110089970 110090252 -38693220 + AluSx SINE Alu 14 292 -20 816 140 82 0 chr11 110090880 110091051 -38692421 - MER53 DNA DNA -2 187 3 996 291 89 25 chr11 110091420 110092133 -38691339 - L2 LINE L2 -40 3273 2511 613 297 24 0 chr11 110093996 110094208 -38689264 - L1MB7 LINE L1 -11 6173 5957 243 0 0 0 chr11 110094319 110094346 -38689126 + (TG)n Simple_repeat Simple_repeat 2 28 0 24 0 0 0 chr11 110094346 110094370 -38689102 + AT_rich Low_complexity Low_complexity 1 24 0 315 279 45 73 chr11 110094700 110094879 -38688593 + L1MEd LINE L1 710 883 -5236 1656 170 14 14 chr11 110094886 110095174 -38688298 - AluJo SINE Alu -22 290 3 330 308 113 20 chr11 110096289 110096484 -38686988 + L1MC4a LINE L1 5313 5525 -2283 207 0 0 0 chr11 110096511 110096534 -38686938 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 1321 183 4 21 chr11 110096549 110096789 -38686683 - AluJo SINE Alu -74 238 3 234 156 0 0 chr11 110096946 110096991 -38686481 - Alu SINE Alu -2 299 255 397 312 82 30 chr11 110096994 110097225 -38686247 + L1MC4a LINE L1 5655 5897 -1911 396 247 52 13 chr11 110098649 110098803 -38684669 - L1MB7 LINE L1 -310 5811 5652 657 26 0 0 chr11 110098818 110098896 -38684576 + L1PA5 LINE L1 6064 6141 -13 30 0 0 0 chr11 110098900 110098930 -38684542 + AT_rich Low_complexity Low_complexity 1 30 0 240 290 32 91 chr11 110098932 110099153 -38684319 - L1MB7 LINE L1 -449 5672 5465 572 217 62 0 chr11 110099493 110099622 -38683850 - FRAM SINE Alu -8 168 32 21 36 0 0 chr11 110099801 110099829 -38683643 + AT_rich Low_complexity Low_complexity 1 28 0 2322 90 0 0 chr11 110101911 110102200 -38681272 - AluSx SINE Alu -23 289 1 371 289 93 54 chr11 110102715 110102944 -38680528 - MIR SINE MIR -19 243 8 372 300 73 33 chr11 110103616 110103766 -38679706 - L2 LINE L2 -3 3310 3155 854 245 128 50 chr11 110103793 110104152 -38679320 + MLT1J2 LTR MaLR 20 406 -44 1035 278 119 23 chr11 110104966 110105245 -38678227 - LTR16C LTR ERVL -13 478 141 486 66 40 0 chr11 110105245 110105321 -38678151 + MADE1 DNA Mariner 1 79 -1 1035 278 119 23 chr11 110105321 110105477 -38677995 - LTR16C LTR ERVL -350 141 1 254 292 130 12 chr11 110106214 110106375 -38677097 + L2 LINE L2 2197 2376 -938 25 0 0 0 chr11 110106622 110106647 -38676825 + AT_rich Low_complexity Low_complexity 1 25 0 283 277 0 69 chr11 110107562 110107692 -38675780 + L1MC4 LINE L1 7103 7223 -819 635 268 169 24 chr11 110107734 110108066 -38675406 - MLT1I LTR MaLR -21 388 9 598 269 138 76 chr11 110108249 110108539 -38674933 + LTR18A LTR ERVL 1 210 -147 461 264 9 0 chr11 110108646 110108756 -38674716 + LTR18A LTR ERVL 245 355 -2 268 283 60 18 chr11 110108823 110108989 -38674483 + L1MC4 LINE L1 7498 7670 -372 225 94 38 75 chr11 110109609 110109662 -38673810 - LTR33A LTR ERVL -420 103 53 683 171 53 18 chr11 110111944 110112114 -38671358 - LTR16C LTR ERVL -9 482 307 665 261 58 0 chr11 110112473 110112661 -38670811 - LTR16C LTR ERVL 0 491 293 1563 145 22 69 chr11 110112808 110113125 -38670347 - MLT1A1 LTR MaLR 0 365 64 204 40 0 0 chr11 110113424 110113449 -38670023 + (T)n Simple_repeat Simple_repeat 1 25 0 2388 81 0 10 chr11 110113579 110113889 -38669583 - AluY SINE Alu -4 307 1 309 274 111 26 chr11 110114258 110114411 -38669061 - L1ME LINE L1 -435 5686 5521 4355 96 14 2 chr11 110114758 110115381 -38668091 - L1PA12 LINE L1 -7 6161 5531 22 56 0 0 chr11 110115905 110115941 -38667531 + AT_rich Low_complexity Low_complexity 1 36 0 620 248 47 26 chr11 110116224 110116458 -38667014 - LTR33 LTR ERVL -6 515 277 331 298 40 8 chr11 110116495 110116619 -38666853 - LTR33 LTR ERVL -324 197 70 242 246 0 0 chr11 110116990 110117051 -38666421 + Alu SINE Alu 226 286 -15 187 283 141 11 chr11 110119152 110119244 -38664228 + L2 LINE L2 1761 1864 -1450 2379 131 8 8 chr11 110119387 110119762 -38663710 - THE1C LTR MaLR 0 375 1 10029 115 24 39 chr11 110119762 110121366 -38662106 - THE1C-int LTR MaLR 0 1580 1 2220 148 13 24 chr11 110121366 110121745 -38661727 - THE1C LTR MaLR 0 375 1 251 383 21 0 chr11 110122545 110122639 -38660833 + L2 LINE L2 3137 3232 -40 1919 263 81 19 chr11 110122975 110123043 -38660429 - L1MC4 LINE L1 -368 7674 7612 195 42 0 0 chr11 110123043 110123067 -38660405 + (CA)n Simple_repeat Simple_repeat 2 25 0 1919 263 81 19 chr11 110123067 110123835 -38659637 - L1MC4 LINE L1 -430 7612 6786 266 323 72 53 chr11 110123879 110124352 -38659120 + L2 LINE L2 2552 3021 -251 227 153 254 0 chr11 110124548 110124607 -38658865 - MER63 DNA MER1_type -134 702 3 1836 166 15 66 chr11 110124910 110125321 -38658151 + MLT1B LTR MaLR 1 390 0 413 279 164 18 chr11 110125444 110125663 -38657809 + MIR SINE MIR 12 262 0 21 57 0 0 chr11 110127740 110127775 -38655697 + AT_rich Low_complexity Low_complexity 1 35 0 316 285 6 57 chr11 110128139 110128297 -38655175 + LTR16C LTR ERVL 342 491 0 222 278 42 14 chr11 110128411 110128483 -38654989 - L2 LINE L2 0 3313 3240 265 237 0 0 chr11 110128510 110128569 -38654903 + MIR SINE MIR 183 241 -21 260 131 131 36 chr11 110128681 110128727 -38654745 - L1MD1 LINE L1 -2 6240 6200 1554 130 18 0 chr11 110128727 110129004 -38654468 + L1MA4 LINE L1 6019 6300 0 260 131 131 36 chr11 110129004 110129041 -38654431 - L1MD1 LINE L1 -42 6200 6149 2988 97 20 14 chr11 110129182 110129624 -38653848 + L1PA11 LINE L1 5728 6172 -2 1630 223 91 35 chr11 110129644 110130299 -38653173 - L1M4c LINE L1 -5434 1108 449 1159 108 69 4 chr11 110130327 110130558 -38652914 - L1P5 LINE L1 -655 5499 5254 2637 84 8 24 chr11 110130559 110130929 -38652543 + THE1B LTR MaLR 1 364 0 11603 102 4 1 chr11 110130929 110132505 -38650967 + THE1B-int LTR MaLR 1 1580 0 777 113 121 0 chr11 110132505 110132629 -38650843 + THE1B LTR MaLR 1 139 -225 11282 198 14 37 chr11 110132629 110134876 -38648596 - L1 LINE L1 -924 5222 3058 8960 166 56 24 chr11 110134876 110136437 -38647035 - L1PA13 LINE L1 -4 6159 4476 1990 136 0 7 chr11 110136437 110136723 -38646749 - AluSx SINE Alu -26 286 3 8960 166 56 24 chr11 110136723 110137771 -38645701 - L1PA13 LINE L1 -1687 4476 3463 11282 198 14 37 chr11 110137771 110138513 -38644959 - L1 LINE L1 -3088 3058 2301 1026 211 175 12 chr11 110139930 110140181 -38643291 - AluSc SINE Alu -7 292 1 1860 164 46 28 chr11 110141169 110141720 -38641752 - MLT2A2 LTR ERVL 0 554 2 2235 124 44 37 chr11 110141721 110142157 -38641315 + L1MA5 LINE L1 5860 6298 -2 292 167 39 20 chr11 110142431 110142533 -38640939 + GA-rich Low_complexity Low_complexity 3 106 0 590 39 13 0 chr11 110142534 110142611 -38640861 + (GGAA)n Simple_repeat Simple_repeat 4 81 0 210 333 138 8 chr11 110142701 110142824 -38640648 + L2 LINE L2 2479 2617 -697 27 62 0 0 chr11 110143115 110143163 -38640309 + AT_rich Low_complexity Low_complexity 1 48 0 226 176 0 20 chr11 110143712 110143763 -38639709 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 579 41 0 0 chr11 110143989 110144062 -38639410 - L1PA5 LINE L1 0 6154 6082 2093 106 7 0 chr11 110144120 110144402 -38639070 - AluSq SINE Alu -29 284 1 2253 91 37 0 chr11 110146527 110146823 -38636649 - AluSc SINE Alu -2 307 1 407 357 105 8 chr11 110147557 110147657 -38635815 + L2 LINE L2 1609 1698 -1616 285 29 0 0 chr11 110147657 110147691 -38635781 + (CA)n Simple_repeat Simple_repeat 1 34 0 407 357 105 8 chr11 110147691 110147982 -38635490 + L2 LINE L2 1698 2038 -1276 2101 127 0 3 chr11 110147998 110148298 -38635174 + AluSq SINE Alu 1 299 -14 591 250 21 0 chr11 110148305 110148445 -38635027 - LTR16A1 LTR ERVL -113 344 202 875 235 75 51 chr11 110148797 110149008 -38634464 - LTR16A1 LTR ERVL 0 457 236 2293 118 116 11 chr11 110149008 110149389 -38634083 + MSTB LTR MaLR 3 423 -3 875 235 75 51 chr11 110149389 110149471 -38634001 - LTR16A1 LTR ERVL -221 236 157 468 352 40 27 chr11 110149754 110150452 -38633020 - ERVL LTR ERVL -90 5389 4707 248 250 30 50 chr11 110150563 110150663 -38632809 - LTR16A1 LTR ERVL -359 98 1 292 314 99 0 chr11 110150779 110150900 -38632572 - HERV16 LTR ERVL -3697 1299 1167 415 127 0 14 chr11 110150903 110150974 -38632498 + LTR60 LTR ERV1 9 78 -508 315 385 26 0 chr11 110151166 110151358 -38632114 - HERV16 LTR ERVL -3993 1003 807 2683 156 4 22 chr11 110151386 110151893 -38631579 + L1MA4 LINE L1 5523 6020 -280 325 185 37 0 chr11 110151902 110151983 -38631489 + L1MB3 LINE L1 6090 6173 -10 3051 14 3 0 chr11 110152084 110152447 -38631025 + L1PA3 LINE L1 5540 5903 -252 346 160 30 40 chr11 110153515 110153615 -38629857 + L1PA15 LINE L1 6064 6162 -3 3465 52 23 104 chr11 110153687 110154539 -38628933 + L1P3 LINE L1 4964 5740 -414 216 0 0 0 chr11 110154687 110154711 -38628761 + (A)n Simple_repeat Simple_repeat 1 24 0 445 282 25 15 chr11 110154749 110154951 -38628521 + L1ME LINE L1 5552 5755 -366 1864 170 0 0 chr11 110155097 110155386 -38628086 + AluSx SINE Alu 5 293 -19 2253 122 0 0 chr11 110155566 110155860 -38627612 - AluSx SINE Alu -18 294 1 2051 123 14 0 chr11 110157014 110157307 -38626165 - AluSx SINE Alu -15 297 1 1897 112 4 7 chr11 110157630 110157899 -38625573 + AluSc SINE Alu 30 297 -12 208 184 0 20 chr11 110158012 110158061 -38625411 + T-rich Low_complexity Low_complexity 4 51 0 347 266 37 9 chr11 110159454 110159563 -38623909 + MIR SINE MIR 9 120 -142 224 325 25 0 chr11 110159871 110159951 -38623521 - MIR SINE MIR -62 146 65 212 217 17 17 chr11 110160172 110160232 -38623240 + (CATA)n Simple_repeat Simple_repeat 2 61 0 191 219 24 0 chr11 110160310 110160351 -38623121 + MIR3 SINE MIR 156 197 -11 1791 178 0 3 chr11 110160890 110161194 -38622278 + AluJb SINE Alu 6 308 -4 1979 173 25 6 chr11 110161820 110162178 -38621294 - MLT1A1 LTR MaLR 0 365 1 4221 243 58 61 chr11 110162183 110163552 -38619920 - MLT1A1-int LTR MaLR -6 1365 1 1675 228 78 9 chr11 110163557 110163979 -38619493 - MLT2B1 LTR ERVL -67 453 3 744 221 113 29 chr11 110164022 110164226 -38619246 + MER58A DNA MER1_type 1 221 -3 2561 85 21 31 chr11 110164373 110164387 -38619085 + L1PB1 LINE L1 5767 5780 -371 225 0 0 0 chr11 110164387 110164412 -38619060 + (TA)n Simple_repeat Simple_repeat 1 25 0 2561 85 21 31 chr11 110164412 110164785 -38618687 + L1PB1 LINE L1 5780 6150 -1 21 26 0 26 chr11 110164785 110164804 -38618668 + AT_rich Low_complexity Low_complexity 1 19 -19 5358 114 37 5 chr11 110164804 110166284 -38617188 + L1PA16 LINE L1 4643 6157 -9 21 26 0 26 chr11 110166284 110166303 -38617169 + AT_rich Low_complexity Low_complexity 19 38 0 1099 229 51 42 chr11 110166424 110166778 -38616694 + L1ME2 LINE L1 5543 5899 -265 495 254 0 16 chr11 110166783 110166905 -38616567 + L1ME2 LINE L1 5997 6116 -48 582 339 123 18 chr11 110167025 110167406 -38616066 + LTR16A LTR ERVL 26 446 -4 230 204 41 0 chr11 110168057 110168106 -38615366 - L2 LINE L2 0 3313 3263 13982 143 23 18 chr11 110168371 110170777 -38612695 + Tigger1 DNA MER2_type 1 2417 -1 592 311 5 10 chr11 110170937 110171146 -38612326 - LTR16B LTR ERVL -12 452 245 6960 39 0 1 chr11 110171190 110172035 -38611437 - L1PA4 LINE L1 -1950 4196 3353 * 9589 34 7 17 chr11 110172031 110173849 -38609623 + L1PA4 LINE L1 4198 5994 -161 1769 52 13 0 chr11 110173949 110174179 -38609293 + L1PA7 LINE L1 5919 6151 -3 26 64 0 0 chr11 110174251 110174298 -38609174 + AT_rich Low_complexity Low_complexity 1 47 0 192 163 0 0 chr11 110174313 110174356 -38609116 + (TA)n Simple_repeat Simple_repeat 1 43 0 27 29 0 0 chr11 110174476 110174510 -38608962 + AT_rich Low_complexity Low_complexity 1 34 0 522 319 6 0 chr11 110174819 110174979 -38608493 + MIR SINE MIR 100 260 -2 227 325 50 0 chr11 110175331 110175411 -38608061 - L3 LINE CR1 -2 1575 1492 416 342 79 31 chr11 110175470 110175698 -38607774 + MLT1K LTR MaLR 3 241 -347 342 96 19 0 chr11 110175824 110175876 -38607596 + MADE1 DNA Mariner 28 80 0 420 303 106 18 chr11 110176544 110176599 -38606873 - MIR SINE MIR -10 252 203 1729 159 46 0 chr11 110176599 110176882 -38606590 - AluSx SINE Alu -16 296 1 420 303 106 18 chr11 110176882 110177044 -38606428 - MIR SINE MIR -59 203 16 236 323 73 10 chr11 110177827 110177923 -38605549 + L2 LINE L2 3211 3312 -1 206 283 0 17 chr11 110178326 110178386 -38605086 - L2 LINE L2 -4 3309 3251 272 296 64 24 chr11 110178514 110178639 -38604833 - MIR SINE MIR -50 212 83 198 0 0 0 chr11 110179036 110179058 -38604414 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 222 324 42 21 chr11 110180139 110180281 -38603191 - MIR SINE MIR -114 148 4 26 0 0 0 chr11 110180469 110180495 -38602977 + AT_rich Low_complexity Low_complexity 1 26 0 1956 170 0 3 chr11 110180501 110180813 -38602659 + AluSx SINE Alu 1 311 -1 919 269 24 12 chr11 110180917 110181166 -38602306 - MIR SINE MIR -3 259 8 194 299 203 41 chr11 110181398 110181763 -38601709 - L2 LINE L2 -1360 1954 1531 507 200 40 0 chr11 110182293 110182393 -38601079 + MER5A DNA MER1_type 9 112 -77 2430 112 19 16 chr11 110182610 110182984 -38600488 + THE1C LTR MaLR 1 375 0 185 353 44 0 chr11 110183309 110183377 -38600095 + L2 LINE L2 3141 3211 -61 226 264 25 31 chr11 110183420 110183583 -38599889 + (TA)n Simple_repeat Simple_repeat 2 163 0 328 200 0 29 chr11 110184607 110184677 -38598795 + MLT2B1 LTR ERVL 1 68 -346 1999 134 11 58 chr11 110184679 110185044 -38598428 + L1PA16 LINE L1 5799 6146 -20 23 0 0 0 chr11 110185044 110185067 -38598405 + AT_rich Low_complexity Low_complexity 1 23 0 1738 193 47 57 chr11 110185074 110185457 -38598015 + MLT2B1 LTR ERVL 71 449 -71 1822 139 0 41 chr11 110185575 110185898 -38597574 + AluSx SINE Alu 1 311 0 325 241 204 0 chr11 110186104 110186212 -38597260 - MIR SINE MIR -40 222 93 253 380 15 58 chr11 110186205 110186375 -38597097 + MIR SINE MIR 61 222 -40 * 1723 29 0 0 chr11 110186375 110186582 -38596890 + L1PA4 LINE L1 5948 6154 -1 253 380 15 58 chr11 110186582 110186616 -38596856 + MIR SINE MIR 222 256 -6 2046 172 13 5 chr11 110188236 110188608 -38594864 - THE1C LTR MaLR 0 375 1 3470 143 31 8 chr11 110189297 110189885 -38593587 - MER7C DNA MER2_type 0 602 2 823 202 20 81 chr11 110189899 110190097 -38593375 - MER5A DNA MER1_type 0 189 4 1995 125 0 26 chr11 110190768 110191080 -38592392 + AluY SINE Alu 1 304 -7 851 154 8 0 chr11 110192526 110192656 -38590816 + AluSq/x SINE Alu 1 131 -181 13163 88 4 1 chr11 110192656 110193691 -38589781 + L1PA3 LINE L1 3528 4558 -1597 2222 107 3 0 chr11 110193691 110193981 -38589491 - AluSq SINE Alu -19 294 4 13163 88 4 1 chr11 110193981 110195569 -38587903 + L1PA3 LINE L1 4558 6155 0 2088 334 40 43 chr11 110195839 110197307 -38586165 - HERVL LTR ERVL -1468 4186 2723 272 330 0 27 chr11 110197335 110197447 -38586025 + ERVL LTR ERVL 2134 2242 -3522 971 314 53 43 chr11 110197498 110198030 -38585442 - HERVL LTR ERVL -2345 2651 2115 313 195 98 12 chr11 110198253 110198335 -38585137 + MER53 DNA DNA 1 89 -100 7394 42 0 0 chr11 110198351 110199884 -38583588 + L1PA5 LINE L1 4614 6145 -9 298 185 111 0 chr11 110199891 110199999 -38583473 - MER53 DNA DNA -47 142 23 * 382 157 0 0 chr11 110199938 110200008 -38583464 + MER53 DNA DNA 117 186 -3 299 327 51 33 chr11 110200014 110200228 -38583244 - HERVL LTR ERVL -3201 1795 1578 442 174 15 30 chr11 110200996 110201128 -38582344 + GA-rich Low_complexity Low_complexity 2 131 0 423 335 110 14 chr11 110201915 110202124 -38581348 + MIR SINE MIR 29 257 -5 2650 96 5 8 chr11 110202130 110202504 -38580968 - THE1C LTR MaLR 0 375 3 24 0 0 0 chr11 110202623 110202647 -38580825 + AT_rich Low_complexity Low_complexity 1 24 0 298 279 240 13 chr11 110203388 110203542 -38579930 - MER5A DNA MER1_type 0 189 1 304 226 60 12 chr11 110203556 110203640 -38579832 + MER5A DNA MER1_type 31 118 -71 701 266 23 0 chr11 110203698 110203871 -38579601 - MER5B DNA MER1_type 0 178 2 235 184 0 0 chr11 110204299 110204337 -38579135 - MER5A DNA MER1_type -6 183 146 326 213 79 102 chr11 110204397 110204462 -38579010 - MER5B DNA MER1_type 0 178 116 758 69 0 0 chr11 110204462 110204564 -38578908 + L1PA11 LINE L1 6072 6173 -1 326 213 79 102 chr11 110204564 110204625 -38578847 - MER5B DNA MER1_type -62 116 55 313 256 105 0 chr11 110206038 110206124 -38577348 + MIR SINE MIR 58 152 -56 1585 153 49 101 chr11 110206156 110206349 -38577123 + MLT2D LTR ERVL 1 202 -212 1651 165 19 32 chr11 110206349 110206718 -38576754 + L1MA8 LINE L1 5923 6286 -5 2238 99 0 0 chr11 110206728 110207022 -38576450 + AluSg SINE Alu 1 294 -16 1585 153 49 101 chr11 110207022 110207203 -38576269 + MLT2D LTR ERVL 211 366 -48 1276 300 22 25 chr11 110207710 110207945 -38575527 - HERVL LTR ERVL -2015 2981 2747 1660 186 51 9 chr11 110207945 110208295 -38575177 - MLT1A1 LTR MaLR 0 365 1 1276 300 22 25 chr11 110208295 110208910 -38574562 - HERVL LTR ERVL -2249 2747 2088 42122 40 3 1 chr11 110208918 110215056 -38568416 + L1PA3 LINE L1 8 6155 0 286 354 108 0 chr11 110215065 110215277 -38568195 - HERVL LTR ERVL -3611 2153 1919 2233 314 88 78 chr11 110215495 110217024 -38566448 - HERVL LTR ERVL -3451 1545 2 448 318 116 34 chr11 110217025 110217440 -38566032 - LTR16A LTR ERVL 0 450 2 1080 133 12 0 chr11 110218012 110218178 -38565294 - MSTA LTR MaLR 0 428 261 983 100 0 0 chr11 110218179 110218319 -38565153 - L1PB1 LINE L1 -218 5933 5794 295 143 0 0 chr11 110218419 110218468 -38565004 + Alu SINE Alu 248 296 -6 22 80 0 0 chr11 110220358 110220408 -38563064 + AT_rich Low_complexity Low_complexity 1 50 0 5768 211 47 37 chr11 110220552 110221626 -38561846 + L1M4 LINE L1 34 1096 -5446 380 20 20 0 chr11 110221626 110221675 -38561797 + (CA)n Simple_repeat Simple_repeat 1 50 0 5768 211 47 37 chr11 110221675 110222124 -38561348 + L1M4 LINE L1 1096 1576 -4966 1926 109 20 37 chr11 110222124 110222418 -38561054 + AluSq SINE Alu 1 289 -24 5768 211 47 37 chr11 110222418 110222515 -38560957 + L1M4 LINE L1 1576 1671 -4871 542 148 39 8 chr11 110222517 110222645 -38560827 + L1MB8 LINE L1 6046 6177 -1 1653 186 32 6 chr11 110222645 110222983 -38560489 + L1MB7 LINE L1 5813 6165 -19 1859 179 22 25 chr11 110225025 110225389 -38558083 - MLT1A1 LTR MaLR -2 363 1 271 330 55 0 chr11 110225920 110226029 -38557443 - L2 LINE L2 -5 3308 3194 2214 132 21 13 chr11 110227856 110228228 -38555244 - THE1C LTR MaLR 0 375 1 1770 148 41 0 chr11 110228385 110228703 -38554769 + L1MA7 LINE L1 5961 6291 0 184 309 131 0 chr11 110228802 110228886 -38554586 + MIR SINE MIR 48 142 -120 634 91 0 0 chr11 110229141 110229229 -38554243 - L1P4 LINE L1 -456 5712 5625 2099 171 133 2 chr11 110230144 110230611 -38552861 - Tigger3b DNA MER2_type 0 1232 705 2450 75 3 0 chr11 110230611 110230906 -38552566 - AluSp SINE Alu -17 296 1 6451 81 14 3 chr11 110230954 110232362 -38551110 - L1PA10 LINE L1 -2 6166 4740 11879 130 10 1 chr11 110232363 110234372 -38549100 - L1P4 LINE L1 -1308 4838 2813 3252 170 33 24 chr11 110234373 110234489 -38548983 - Tigger3b DNA MER2_type -2320 708 594 1958 160 0 22 chr11 110234489 110234807 -38548665 - AluSx SINE Alu -1 311 1 3252 170 33 24 chr11 110234807 110235391 -38548081 - Tigger3b DNA MER2_type -2434 594 2 480 135 90 0 chr11 110235481 110235570 -38547902 + MER4A LTR ERV1 2 98 -566 1357 150 33 76 chr11 110235570 110235931 -38547541 + MER4A LTR ERV1 261 664 0 244 57 0 0 chr11 110236595 110236630 -38546842 - LTR64 LTR ERVK -270 288 254 1537 141 57 4 chr11 110236631 110236894 -38546578 - LTR64 LTR ERVK -281 277 1 726 169 0 0 chr11 110237279 110237403 -38546069 - AluJb SINE Alu -10 302 179 565 215 35 14 chr11 110237408 110237552 -38545920 - L1PB4 LINE L1 -2 6154 6008 2947 144 47 6 chr11 110237910 110238403 -38545069 - LTR64 LTR ERVK 0 513 1 871 250 0 27 chr11 110240586 110240810 -38542662 - MER58A DNA MER1_type -6 218 1 286 284 0 0 chr11 110241224 110241291 -38542181 - LTR16C LTR ERVL -2 489 423 219 365 133 14 chr11 110241467 110241678 -38541794 + L2 LINE L2 581 816 -2498 454 280 124 28 chr11 110242654 110242872 -38540600 + MIR SINE MIR 23 261 -1 1961 225 47 45 chr11 110243630 110244251 -38539221 + MLT1E3 LTR MaLR 1 622 -2 2373 103 0 0 chr11 110244604 110244954 -38538518 + L1PA12 LINE L1 5749 6098 -70 438 20 0 0 chr11 110244966 110245017 -38538455 + (CA)n Simple_repeat Simple_repeat 2 52 0 920 126 6 28 chr11 110245617 110245799 -38537673 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 871 81 46 17 chr11 110245799 110245972 -38537500 + GA-rich Low_complexity Low_complexity 3 180 0 2039 126 0 3 chr11 110248715 110249027 -38534445 - AluSq SINE Alu 0 311 1 223 254 0 18 chr11 110249075 110249130 -38534342 - MIR SINE MIR -153 109 56 22 35 0 0 chr11 110249620 110249649 -38533823 + AT_rich Low_complexity Low_complexity 1 29 0 323 270 136 10 chr11 110250896 110251044 -38532428 + MIR3 SINE MIR 8 169 -39 432 0 0 0 chr11 110252653 110252701 -38530771 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 1758 133 3 39 chr11 110252703 110252858 -38530614 - AluSx SINE Alu -36 276 134 13125 88 8 5 chr11 110252858 110254438 -38529034 - L1PA7 LINE L1 -3 6151 4559 2232 109 3 0 chr11 110254438 110254731 -38528741 + AluSq SINE Alu 1 294 -19 13125 88 8 5 chr11 110254731 110255766 -38527706 - L1PA7 LINE L1 -1595 4559 3528 1758 133 3 39 chr11 110255766 110255896 -38527576 - AluSx SINE Alu -178 134 1 2109 70 0 79 chr11 110257343 110257673 -38525799 - AluY SINE Alu -7 304 1 182 254 15 0 chr11 110258416 110258483 -38524989 + (TA)n Simple_repeat Simple_repeat 2 69 0 35 71 0 0 chr11 110258990 110259060 -38524412 + AT_rich Low_complexity Low_complexity 1 70 0 181 260 27 55 chr11 110259987 110260060 -38523412 + MIR SINE MIR 160 230 -32 497 251 269 0 chr11 110260413 110260588 -38522884 - MIR SINE MIR -37 225 4 25 31 0 0 chr11 110260609 110260641 -38522831 + AT_rich Low_complexity Low_complexity 1 32 0 186 273 23 0 chr11 110261726 110261770 -38521702 + L2 LINE L2 2710 2754 -560 242 281 99 41 chr11 110262039 110262160 -38521312 + L2 LINE L2 3186 3313 0 315 251 141 16 chr11 110262958 110263149 -38520323 - L1MC4 LINE L1 -143 7899 7685 299 235 10 98 chr11 110263416 110263518 -38519954 - L2 LINE L2 0 3313 3221 252 86 0 0 chr11 110264678 110264713 -38518759 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 2393 79 0 7 chr11 110264994 110265297 -38518175 + AluSx SINE Alu 2 302 -10 202 259 56 0 chr11 110265613 110265667 -38517805 + L2 LINE L2 3256 3312 -1 317 385 35 7 chr11 110265782 110265925 -38517547 + MIR SINE MIR 1 147 -115 682 267 102 32 chr11 110266271 110266586 -38516886 + MER93b LTR ERV1 1 337 -36 2412 78 3 0 chr11 110266625 110266921 -38516551 + AluSp SINE Alu 1 297 -16 198 0 0 0 chr11 110266921 110266943 -38516529 + (TA)n Simple_repeat Simple_repeat 2 23 0 1259 298 97 12 chr11 110267049 110267556 -38515916 + L2 LINE L2 2312 2861 -453 238 121 0 0 chr11 110267559 110267592 -38515880 + MSTA LTR MaLR 3 35 -393 546 307 3 16 chr11 110267592 110267923 -38515549 - AluSx SINE Alu 0 327 1 895 254 110 4 chr11 110267923 110268151 -38515321 + MSTA LTR MaLR 21 272 -156 24 0 0 0 chr11 110268269 110268293 -38515179 + GC_rich Low_complexity Low_complexity 1 24 0 2377 103 0 0 chr11 110268313 110268625 -38514847 - AluSx SINE Alu 0 312 1 2155 148 90 8 chr11 110268625 110269002 -38514470 + MSTA LTR MaLR 21 428 0 915 295 118 12 chr11 110269002 110269402 -38514070 + L2 LINE L2 2857 3298 -15 5287 140 37 9 chr11 110269882 110270777 -38512695 + MER49 LTR ERV1 3 922 -1 289 247 12 37 chr11 110273502 110273583 -38509889 - L2 LINE L2 -10 3262 3184 326 335 52 26 chr11 110273601 110273795 -38509677 + L2 LINE L2 1699 1897 -1417 432 0 0 0 chr11 110274228 110274276 -38509196 + (TG)n Simple_repeat Simple_repeat 1 48 0 187 182 114 23 chr11 110274491 110274535 -38508937 + L2 LINE L2 3265 3312 -1 21 0 0 0 chr11 110274798 110274819 -38508653 + AT_rich Low_complexity Low_complexity 1 21 0 1897 160 0 0 chr11 110275366 110275647 -38507825 + AluJb SINE Alu 1 281 -31 244 333 16 56 chr11 110275898 110276024 -38507448 - L2 LINE L2 -8 3305 3185 195 257 27 27 chr11 110276019 110276093 -38507379 - L2 LINE L2 -214 3058 2985 * 187 372 184 18 chr11 110276178 110276401 -38507071 - L2 LINE L2 -457 2857 2598 22 0 0 0 chr11 110276822 110276844 -38506628 + AT_rich Low_complexity Low_complexity 1 22 0 1930 157 0 7 chr11 110277806 110278105 -38505367 - AluJb SINE Alu -15 297 1 22 0 0 0 chr11 110278266 110278288 -38505184 + AT_rich Low_complexity Low_complexity 1 22 0 2267 113 0 0 chr11 110278624 110278924 -38504548 + AluSx SINE Alu 1 300 -12 2146 88 4 0 chr11 110279024 110279296 -38504176 - AluSq SINE Alu -40 273 1 2147 114 3 3 chr11 110279376 110279673 -38503799 - AluSg SINE Alu -13 297 1 293 238 143 124 chr11 110280971 110281181 -38502291 + MIR SINE MIR 20 233 -29 180 0 0 0 chr11 110281650 110281670 -38501802 + (TG)n Simple_repeat Simple_repeat 1 20 0 2011 132 0 7 chr11 110281671 110281960 -38501512 - AluSx SINE Alu -6 306 20 269 333 11 0 chr11 110282255 110282345 -38501127 - HAL1 LINE L1 -604 1903 1813 2165 92 28 0 chr11 110282700 110282982 -38500490 + AluSg1 SINE Alu 1 290 -19 306 73 0 0 chr11 110282982 110283023 -38500449 + (GGGA)n Simple_repeat Simple_repeat 3 43 0 258 32 0 0 chr11 110283707 110283738 -38499734 + (TA)n Simple_repeat Simple_repeat 2 32 0 2263 104 0 13 chr11 110283740 110284056 -38499416 - AluSx SINE Alu 0 312 1 329 338 135 27 chr11 110284374 110284782 -38498690 - L2 LINE L2 -274 2998 2543 2114 122 0 0 chr11 110285121 110285407 -38498065 + AluSx SINE Alu 1 286 -26 23 0 0 0 chr11 110285407 110285430 -38498042 + AT_rich Low_complexity Low_complexity 1 23 0 4682 193 53 29 chr11 110285432 110287112 -38496360 - L1MD1 LINE L1 -5 6631 4922 4522 222 110 18 chr11 110287114 110288259 -38495213 - L1MD1 LINE L1 -5178 1362 112 1258 142 15 0 chr11 110288280 110288485 -38494987 + MER2 DNA MER2_type 2 209 -136 2694 84 169 2 chr11 110288506 110288909 -38494563 - LTR12 LTR ERV1 -244 470 1 451 224 0 0 chr11 110288924 110289000 -38494472 + MER2 DNA MER2_type 270 345 0 513 131 12 12 chr11 110289000 110289084 -38494388 - L1MD1 LINE L1 -6436 104 21 21 0 0 0 chr11 110289695 110289716 -38493756 + AT_rich Low_complexity Low_complexity 1 21 0 206 296 22 118 chr11 110290185 110290320 -38493152 + L2 LINE L2 3150 3271 -1 368 341 122 37 chr11 110290682 110291010 -38492462 + L2 LINE L2 2898 3253 -60 325 370 48 14 chr11 110291090 110291236 -38492236 - L2 LINE L2 -3 3269 3119 198 247 75 43 chr11 110291236 110291329 -38492143 - L2 LINE L2 0 3272 3177 769 259 102 25 chr11 110291490 110291726 -38491746 + MIR SINE MIR 9 262 0 1392 272 110 19 chr11 110292150 110292679 -38490793 + L2 LINE L2 461 1037 -2277 3945 227 106 50 chr11 110292679 110293318 -38490154 - L1ME2 LINE L1 -120 6044 5442 186 71 0 0 chr11 110293318 110293346 -38490126 + (TA)n Simple_repeat Simple_repeat 2 29 0 3945 227 106 50 chr11 110293346 110293824 -38489648 - L1ME2 LINE L1 -722 5442 4992 696 206 39 103 chr11 110293824 110294057 -38489415 - MER20 DNA MER1_type 0 219 2 3945 227 106 50 chr11 110294057 110295036 -38488436 - L1ME2 LINE L1 -1172 4992 3746 3483 120 0 9 chr11 110295036 110295562 -38487910 - Tigger4(Zombi) DNA MER2_type 0 2731 2211 471 163 12 12 chr11 110295549 110295635 -38487837 - Tigger4(Zombi) DNA MER2_type -2645 86 1 * 2659 205 58 134 chr11 110295635 110295973 -38487499 - L1ME2 LINE L1 -2399 3747 3385 2839 19 0 0 chr11 110295973 110296287 -38487185 + AluYb8 SINE Alu 1 314 -4 2659 205 58 134 chr11 110296287 110296667 -38486805 - L1ME2 LINE L1 -2761 3385 2978 707 164 8 23 chr11 110296667 110296795 -38486677 + FLAM_C SINE Alu 1 126 -17 2659 205 58 134 chr11 110296795 110297477 -38485995 - L1ME2 LINE L1 -3168 2978 2336 492 143 0 0 chr11 110297637 110297707 -38485765 - LTR40b LTR ERVL -1 461 392 699 223 137 103 chr11 110298565 110299041 -38484431 - MLT1H1 LTR MaLR 0 555 64 4571 192 45 16 chr11 110299297 110301270 -38482202 - L1MB3 LINE L1 -75 6108 4079 405 230 10 10 chr11 110301804 110301904 -38481568 - Charlie8 DNA MER1_type -2224 193 94 29 84 0 0 chr11 110302226 110302297 -38481175 + AT_rich Low_complexity Low_complexity 1 71 0 324 363 60 60 chr11 110303075 110303546 -38479926 - L2 LINE L2 -1 3271 2770 601 248 58 67 chr11 110303649 110304056 -38479416 - MLT1J LTR MaLR -45 466 1 1802 175 0 7 chr11 110304328 110304631 -38478841 + AluJb SINE Alu 1 301 -11 2046 111 17 7 chr11 110304683 110304971 -38478501 + AluSx SINE Alu 1 291 -21 28 48 0 0 chr11 110305025 110305067 -38478405 + AT_rich Low_complexity Low_complexity 1 42 0 386 334 93 53 chr11 110305259 110305636 -38477836 - L2 LINE L2 -2761 553 162 * 528 235 181 7 chr11 110305626 110305775 -38477697 + MIR SINE MIR 82 256 -6 21 71 0 0 chr11 110306012 110306054 -38477418 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chr11 110306949 110306979 -38476493 + AT_rich Low_complexity Low_complexity 1 30 0 361 373 40 0 chr11 110307119 110307269 -38476203 - L2 LINE L2 -219 3053 2898 1045 235 154 10 chr11 110307802 110308229 -38475243 - LTR33 LTR ERVL -2 519 1 381 316 134 5 chr11 110308241 110308428 -38475044 - L2 LINE L2 -1387 1927 1717 462 301 52 33 chr11 110308881 110309153 -38474319 - L2 LINE L2 -464 2850 2574 1659 198 3 28 chr11 110309326 110309731 -38473741 + AluJo SINE Alu 1 397 0 253 360 75 27 chr11 110309988 110310135 -38473337 + L2 LINE L2 3119 3272 0 304 317 225 51 chr11 110310224 110310701 -38472771 - L2 LINE L2 -300 2972 2350 347 65 0 0 chr11 110310701 110310747 -38472725 + L1MB1 LINE L1 6123 6168 0 304 317 225 51 chr11 110310747 110310931 -38472541 - L2 LINE L2 -922 2350 2199 250 332 79 25 chr11 110311559 110311761 -38471711 - L2 LINE L2 -1124 2190 1978 2201 94 7 0 chr11 110312116 110312428 -38471044 - AluSc SINE Alu 0 309 3 237 212 15 15 chr11 110312712 110312778 -38470694 + (TA)n Simple_repeat Simple_repeat 2 67 0 459 347 0 16 chr11 110314619 110314929 -38468543 + CT-rich Low_complexity Low_complexity 1 304 0 206 140 0 40 chr11 110314973 110315023 -38468449 + (GAGAA)n Simple_repeat Simple_repeat 5 52 0 1381 245 65 57 chr11 110317210 110317250 -38466222 + L1ME LINE L1 524 562 -5518 2350 91 7 0 chr11 110317250 110317557 -38465915 - AluSc SINE Alu 0 309 1 1381 245 65 57 chr11 110317557 110318269 -38465203 + L1ME LINE L1 562 1301 -4779 25 65 0 0 chr11 110318757 110318803 -38464669 + AT_rich Low_complexity Low_complexity 1 46 0 434 335 108 6 chr11 110319194 110319352 -38464120 + MER5B DNA MER1_type 1 174 -4 24 32 0 0 chr11 110319469 110319500 -38463972 + AT_rich Low_complexity Low_complexity 1 31 0 2050 135 14 0 chr11 110322128 110322424 -38461048 + AluSx SINE Alu 1 300 -12 1873 120 13 33 chr11 110322455 110322754 -38460718 + AluSx SINE Alu 1 293 -19 355 284 47 31 chr11 110323430 110323557 -38459915 + L2 LINE L2 3140 3268 -4 430 313 129 9 chr11 110323766 110323983 -38459489 - MIR SINE MIR 0 262 20 211 322 164 62 chr11 110324628 110324874 -38458598 + L2 LINE L2 584 803 -2511 719 127 25 0 chr11 110324874 110324992 -38458480 - L1PA16 LINE L1 0 6166 6046 211 322 164 62 chr11 110324992 110325122 -38458350 + L2 LINE L2 803 918 -2396 1785 168 44 0 chr11 110325122 110325420 -38458052 - AluJo SINE Alu -1 311 1 211 322 164 62 chr11 110325420 110325790 -38457682 + L2 LINE L2 918 1408 -1906 25 65 0 0 chr11 110325830 110325876 -38457596 + AT_rich Low_complexity Low_complexity 1 46 0 24 32 0 0 chr11 110326121 110326152 -38457320 + AT_rich Low_complexity Low_complexity 1 31 0 1780 171 0 0 chr11 110327116 110327425 -38456047 - AluJb SINE Alu 0 309 1 1615 260 100 18 chr11 110327562 110328305 -38455167 + L1ME3A LINE L1 4477 5280 -866 419 263 207 28 chr11 110328296 110328653 -38454819 + L1ME3A LINE L1 5734 6154 -16 * 199 321 12 12 chr11 110328748 110328829 -38454643 - MIR3 SINE MIR -3 205 125 712 265 82 9 chr11 110328850 110329069 -38454403 - MIR SINE MIR -21 241 7 1639 159 29 26 chr11 110329070 110329378 -38454094 - AluJb SINE Alu -3 309 1 375 353 10 35 chr11 110329407 110329608 -38453864 + L3 LINE CR1 641 836 -741 552 219 23 0 chr11 110329665 110329793 -38453679 - FLAM_C SINE Alu -1 132 2 2136 129 3 0 chr11 110329931 110330242 -38453230 + AluSx SINE Alu 1 312 0 2373 59 3 0 chr11 110330251 110330538 -38452934 + AluY SINE Alu 2 289 -22 2227 107 0 0 chr11 110330625 110330916 -38452556 + AluSg SINE Alu 1 291 -19 484 264 247 19 chr11 110330987 110331404 -38452068 - L1ME3 LINE L1 -215 5947 5436 2744 82 30 0 chr11 110331404 110331771 -38451701 + L1PA10 LINE L1 5776 6153 -15 302 253 128 6 chr11 110331883 110332115 -38451357 - L1ME3 LINE L1 -747 5399 5189 21 0 0 0 chr11 110332366 110332387 -38451085 + AT_rich Low_complexity Low_complexity 1 21 0 456 253 229 6 chr11 110332468 110332638 -38450834 + L3 LINE CR1 1232 1439 -138 453 270 117 59 chr11 110333304 110333526 -38449946 - MER112 DNA MER1_type -6 254 20 526 235 7 52 chr11 110333542 110333678 -38449794 + MIR SINE MIR 7 136 -126 5294 113 14 4 chr11 110333683 110334456 -38449016 - L1PA15 LINE L1 -2 6163 5383 220 250 0 14 chr11 110334456 110334558 -38448914 + MIR SINE MIR 119 262 0 298 240 114 35 chr11 110335191 110335432 -38448040 - Charlie7 DNA MER1_type -1926 686 396 2434 84 0 3 chr11 110335455 110335765 -38447707 + AluSc SINE Alu 1 309 0 978 259 68 14 chr11 110335847 110336202 -38447270 - Charlie7 DNA MER1_type -2211 401 28 232 364 118 0 chr11 110336230 110336340 -38447132 + L2 LINE L2 3150 3272 0 2347 86 0 10 chr11 110336951 110337253 -38446219 + AluSq SINE Alu 1 299 -14 1679 121 59 22 chr11 110337570 110337842 -38445630 + AluJo SINE Alu 1 282 -30 34 0 0 0 chr11 110337849 110337883 -38445589 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chr11 110338419 110338450 -38445022 + AT_rich Low_complexity Low_complexity 1 31 0 2119 128 0 0 chr11 110339402 110339692 -38443780 - AluY SINE Alu -16 295 6 324 318 0 0 chr11 110340201 110340327 -38443145 - L1ME LINE L1 -370 5751 5626 269 286 0 0 chr11 110340392 110340462 -38443010 - L1ME LINE L1 -493 5628 5559 236 313 53 87 chr11 110340799 110340864 -38442608 - L2 LINE L2 0 3313 3247 16533 127 35 7 chr11 110340864 110343387 -38440085 + Tigger4(Zombi) DNA MER2_type 1 2604 -127 2183 133 3 0 chr11 110343387 110343687 -38439785 - AluSx SINE Alu -11 301 1 16533 127 35 7 chr11 110343687 110343816 -38439656 + Tigger4(Zombi) DNA MER2_type 2604 2728 -3 236 313 53 87 chr11 110343816 110343900 -38439572 - L2 LINE L2 -66 3247 3169 2045 133 44 0 chr11 110344093 110344387 -38439085 - AluSq SINE Alu -6 307 1 25 75 0 0 chr11 110345198 110345251 -38438221 + AT_rich Low_complexity Low_complexity 1 53 0 808 271 99 106 chr11 110345381 110346676 -38436796 + L1MEd LINE L1 414 1587 -4851 268 226 98 53 chr11 110346739 110346872 -38436600 + L1MEd LINE L1 1838 1976 -4564 237 65 0 0 chr11 110346872 110346903 -38436569 + (TATATG)n Simple_repeat Simple_repeat 6 36 0 21 0 0 0 chr11 110346990 110347011 -38436461 + AT_rich Low_complexity Low_complexity 1 21 0 410 294 105 8 chr11 110347120 110347368 -38436104 + L1MEd LINE L1 3076 3347 -3193 1048 188 48 5 chr11 110347382 110347590 -38435882 - MER20 DNA MER1_type 0 219 3 2947 247 80 76 chr11 110347625 110347783 -38435689 + L1MCc LINE L1 19 175 -6427 2417 60 0 3 chr11 110347783 110348081 -38435391 + AluY SINE Alu 1 297 -14 2947 247 80 76 chr11 110348081 110349030 -38434442 + L1MCc LINE L1 175 1162 -5440 1558 146 4 20 chr11 110349030 110349306 -38434166 + AluJb SINE Alu 35 306 0 2947 247 80 76 chr11 110349306 110349861 -38433611 + L1MCc LINE L1 1162 1713 -4889 436 252 14 7 chr11 110349848 110349991 -38433481 + L1ME3A LINE L1 5808 5951 -219 * 32 26 0 0 chr11 110350235 110350274 -38433198 + AT_rich Low_complexity Low_complexity 1 39 0 26 0 0 0 chr11 110350567 110350593 -38432879 + AT_rich Low_complexity Low_complexity 1 26 0 6204 92 13 51 chr11 110351164 110352057 -38431415 - L1PA15 LINE L1 -6 6159 5296 2200 104 0 3 chr11 110352057 110352346 -38431126 + AluSq SINE Alu 1 288 -25 6204 92 13 51 chr11 110352346 110352809 -38430663 - L1PA15 LINE L1 -869 5296 4817 1994 48 12 0 chr11 110352982 110353231 -38430241 - L1PA7 LINE L1 0 6154 5903 216 287 277 11 chr11 110353304 110353398 -38430074 - MER5A DNA MER1_type 0 189 71 543 216 177 6 chr11 110353462 110353609 -38429863 - MER5B DNA MER1_type -11 178 1 259 277 133 0 chr11 110353609 110353659 -38429813 - L2 LINE L2 -2810 504 444 230 296 57 23 chr11 110353961 110354049 -38429423 - L2 LINE L2 -1 3312 3222 1373 212 98 59 chr11 110354073 110354479 -38428993 + MLT2E LTR ERVL 74 495 -133 555 212 36 15 chr11 110354532 110354669 -38428803 + MLT2E LTR ERVL 487 626 -2 2302 102 0 0 chr11 110355138 110355441 -38428031 - AluSg SINE Alu -7 303 1 1718 121 39 62 chr11 110356409 110356716 -38426756 + AluJo SINE Alu 1 300 -12 427 291 210 17 chr11 110356839 110357052 -38426420 - MIR SINE MIR -7 255 1 901 150 8 0 chr11 110357870 110358003 -38425469 + AluJo SINE Alu 1 134 -178 2141 111 13 7 chr11 110358006 110358313 -38425159 + AluSc SINE Alu 1 309 0 1777 175 0 29 chr11 110358506 110358814 -38424658 + AluJb SINE Alu 1 299 -13 21 0 0 0 chr11 110359195 110359216 -38424256 + AT_rich Low_complexity Low_complexity 1 21 0 864 219 65 4 chr11 110359229 110359476 -38423996 - L1MC4a LINE L1 -1292 6516 6255 1241 191 0 99 chr11 110359479 110359793 -38423679 - AluJo SINE Alu -13 299 17 622 199 180 27 chr11 110359812 110360068 -38423404 - L1MC3 LINE L1 -1560 6225 5931 5046 118 60 0 chr11 110360118 110360864 -38422608 - MER54B LTR ERVL 0 793 3 1798 176 3 3 chr11 110360876 110361166 -38422306 + AluJo SINE Alu 1 290 -22 21 0 0 0 chr11 110361166 110361187 -38422285 + AT_rich Low_complexity Low_complexity 1 21 0 333 200 71 24 chr11 110361191 110361276 -38422196 + L1MC3 LINE L1 6543 6631 -1154 318 106 0 0 chr11 110361276 110361323 -38422149 + (TA)n Simple_repeat Simple_repeat 2 48 0 3133 198 73 88 chr11 110361354 110361500 -38421972 + L1MC4a LINE L1 6679 6826 -982 2184 88 0 7 chr11 110361500 110361829 -38421643 + AluSp SINE Alu 1 327 0 3133 198 73 88 chr11 110361829 110361870 -38421602 + L1MC4a LINE L1 6826 6866 -942 230 65 0 0 chr11 110361870 110361932 -38421540 + AluSp/q SINE Alu 254 315 0 3133 198 73 88 chr11 110361932 110362858 -38420614 + L1MC4a LINE L1 6866 7808 0 402 21 0 0 chr11 110362998 110363045 -38420427 + (TA)n Simple_repeat Simple_repeat 1 47 0 2592 133 26 9 chr11 110363272 110363693 -38419779 - MSTA LTR MaLR 0 428 1 715 325 37 4 chr11 110363961 110364204 -38419268 - MIR SINE MIR 0 262 12 2187 116 0 0 chr11 110364219 110364511 -38418961 - AluSx SINE Alu -20 292 1 2180 117 3 0 chr11 110364773 110365073 -38418399 - AluSq SINE Alu -12 301 1 450 345 161 38 chr11 110365485 110365902 -38417570 - L2 LINE L2 0 3272 2805 260 224 93 9 chr11 110366221 110366328 -38417144 + MER112 DNA MER1_type 133 248 -12 542 273 98 22 chr11 110366679 110367045 -38416427 + L1ME4a LINE L1 5710 6103 -18 564 90 0 45 chr11 110367405 110367494 -38415978 - FLAM_C SINE Alu -8 135 51 25 0 0 0 chr11 110367580 110367605 -38415867 + AT_rich Low_complexity Low_complexity 1 25 0 508 322 69 42 chr11 110368073 110368405 -38415067 - L2 LINE L2 -4 3268 2928 2175 104 0 7 chr11 110368540 110368839 -38414633 + AluSx SINE Alu 1 297 -15 789 255 37 7 chr11 110368895 110369166 -38414306 + HAL1 LINE L1 108 386 -2121 442 277 34 29 chr11 110369285 110369523 -38413949 + LTR16A LTR ERVL 12 250 -200 650 273 66 15 chr11 110369574 110369926 -38413546 + L1M4 LINE L1 4373 4750 -1396 2099 151 0 0 chr11 110369926 110370231 -38413241 - AluSx SINE Alu -6 306 2 650 273 66 15 chr11 110370231 110370289 -38413183 + L1M4 LINE L1 4750 4804 -1342 24 53 0 0 chr11 110370296 110370334 -38413138 + AT_rich Low_complexity Low_complexity 1 38 0 473 246 135 90 chr11 110370391 110370835 -38412637 + LTR16B LTR ERVL 1 464 0 345 273 85 12 chr11 110370835 110371000 -38412472 + HERV16 LTR ERVL 1 177 -4819 869 303 35 44 chr11 110371642 110372056 -38411416 + HERV16 LTR ERVL 1278 1694 -3302 2202 110 0 3 chr11 110372056 110372348 -38411124 - AluSx SINE Alu -21 291 1 2498 40 0 10 chr11 110372356 110372658 -38410814 - AluY SINE Alu -12 299 1 869 303 35 44 chr11 110372658 110372854 -38410618 + HERV16 LTR ERVL 1701 1954 -3042 261 266 13 0 chr11 110372871 110372950 -38410522 + HAL1 LINE L1 1691 1770 -737 264 315 22 0 chr11 110372952 110373041 -38410431 + LTR16B LTR ERVL 1 91 -373 775 225 147 16 chr11 110373103 110373477 -38409995 + HAL1 LINE L1 1794 2216 -291 436 186 196 39 chr11 110373496 110373700 -38409772 + HAL1 LINE L1 2265 2500 -7 697 169 7 40 chr11 110373732 110373880 -38409592 - FLAM_C SINE Alu 0 143 1 180 271 0 0 chr11 110374073 110374086 -38409386 + A-rich Low_complexity Low_complexity 1 13 -105 2699 163 43 22 chr11 110374086 110374620 -38408852 + L1MB7 LINE L1 5632 6176 -8 180 271 0 0 chr11 110374620 110374724 -38408748 + A-rich Low_complexity Low_complexity 12 118 0 1972 164 0 0 chr11 110375722 110376009 -38407463 - AluJb SINE Alu -25 287 1 664 249 27 82 chr11 110376310 110376447 -38407025 - MIR SINE MIR 0 262 144 2065 116 43 7 chr11 110376447 110376748 -38406724 + AluSx SINE Alu 1 312 0 664 249 27 82 chr11 110376748 110376867 -38406605 - MIR SINE MIR -118 144 20 523 333 169 8 chr11 110377306 110377555 -38405917 + L3 LINE CR1 399 687 -890 2057 153 7 0 chr11 110377904 110378212 -38405260 + AluSx SINE Alu 1 310 -2 2351 80 0 10 chr11 110378214 110378528 -38404944 + AluY SINE Alu 1 311 0 1537 180 68 68 chr11 110379063 110379165 -38404307 + MSTD LTR MaLR 1 102 -294 1890 158 0 7 chr11 110379165 110379468 -38404004 + AluSx SINE Alu 1 301 -11 1537 180 68 68 chr11 110379468 110379759 -38403713 + MSTD LTR MaLR 101 394 -2 2144 92 0 31 chr11 110379910 110380235 -38403237 - AluSx SINE Alu 0 316 1 749 186 0 0 chr11 110380282 110380400 -38403072 + FLAM_C SINE Alu 1 118 -25 414 288 79 57 chr11 110380426 110380612 -38402860 - L2 LINE L2 -874 2440 2247 1662 170 16 39 chr11 110380612 110380918 -38402554 - AluJo SINE Alu -13 299 1 414 288 79 57 chr11 110380918 110380960 -38402512 - L2 LINE L2 -1067 2247 2207 187 200 0 0 chr11 110381032 110381072 -38402400 - L2 LINE L2 -1598 1716 1677 2108 102 14 3 chr11 110381425 110381710 -38401762 + AluSx SINE Alu 1 288 -24 2186 94 0 21 chr11 110381737 110382054 -38401418 - AluSx SINE Alu 0 311 1 455 290 70 4 chr11 110382145 110382310 -38401162 - LTR16A LTR ERVL 0 491 273 192 284 125 11 chr11 110382769 110382857 -38400615 - L2 LINE L2 -9 3304 3207 2300 102 3 3 chr11 110383046 110383350 -38400122 + AluSx SINE Alu 1 304 -8 305 281 74 25 chr11 110383379 110383500 -38399972 - L2 LINE L2 -17 3296 3170 404 212 47 0 chr11 110383774 110383859 -38399613 - MIR SINE MIR 0 262 174 217 221 88 44 chr11 110385484 110385552 -38397920 - MIR SINE MIR -127 135 65 215 221 32 11 chr11 110385638 110385733 -38397739 + (TTTAA)n Simple_repeat Simple_repeat 1 97 0 621 310 121 29 chr11 110385902 110386347 -38397125 - L2 LINE L2 0 3313 2828 1250 200 97 35 chr11 110386427 110386797 -38396675 + LTR1B LTR ERV1 1 393 -433 948 227 64 86 chr11 110386899 110387339 -38396133 + LTR1B LTR ERV1 397 826 0 685 264 28 93 chr11 110387352 110387674 -38395798 - L2 LINE L2 -597 2717 2417 2048 114 0 20 chr11 110387702 110387999 -38395473 + AluY SINE Alu 1 291 -20 551 244 138 6 chr11 110388042 110388202 -38395270 - MER5A DNA MER1_type 0 189 9 1898 166 3 3 chr11 110388269 110388558 -38394914 - AluJo SINE Alu -23 289 1 40 49 0 0 chr11 110388568 110388629 -38394843 + AT_rich Low_complexity Low_complexity 1 61 0 2142 113 0 3 chr11 110388851 110389155 -38394317 - AluSg SINE Alu 0 303 1 27665 56 7 2 chr11 110389525 110394071 -38389401 - L1PA6 LINE L1 -6 6148 1578 2068 145 14 0 chr11 110394071 110394360 -38389112 - AluSx SINE Alu -19 293 1 318 176 0 47 chr11 110394486 110394571 -38388901 + L1MA9 LINE L1 6231 6311 -1 1881 167 3 7 chr11 110394632 110394938 -38388534 + AluJb SINE Alu 1 305 -7 2185 124 0 10 chr11 110395138 110395444 -38388028 - AluSq SINE Alu -10 303 1 2265 123 0 3 chr11 110396360 110396669 -38386803 - AluSq SINE Alu -5 308 1 512 288 106 15 chr11 110398137 110398335 -38385137 - MIR SINE MIR -46 216 1 22 0 0 0 chr11 110399108 110399130 -38384342 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr11 110399271 110399302 -38384170 + AT_rich Low_complexity Low_complexity 1 31 0 1782 165 0 20 chr11 110399303 110399600 -38383872 - AluJo SINE Alu -21 291 1 2178 114 0 3 chr11 110399614 110399903 -38383569 - AluSc SINE Alu -21 288 1 21 71 0 0 chr11 110399956 110399998 -38383474 + AT_rich Low_complexity Low_complexity 1 42 0 186 137 0 137 chr11 110400374 110400425 -38383047 - L3b LINE CR1 -8 1575 1532 23 68 0 0 chr11 110401666 110401710 -38381762 + AT_rich Low_complexity Low_complexity 1 44 0 216 171 171 0 chr11 110401811 110401881 -38381591 + L2 LINE L2 1817 1898 -1416 1589 207 7 10 chr11 110401979 110402279 -38381193 - AluJb SINE Alu -13 299 1 2267 99 7 3 chr11 110402333 110402636 -38380836 + AluSp SINE Alu 1 304 -9 21 82 0 0 chr11 110402972 110403021 -38380451 + AT_rich Low_complexity Low_complexity 1 49 0 2226 104 10 0 chr11 110403023 110403320 -38380152 + AluSg SINE Alu 1 300 -10 407 263 39 88 chr11 110403752 110403957 -38379515 + MER91A DNA MER1_type 2 196 0 191 257 149 54 chr11 110404018 110404166 -38379306 - MIR SINE MIR -10 252 91 232 174 0 0 chr11 110404355 110404401 -38379071 + A-rich Low_complexity Low_complexity 1 46 0 352 267 122 0 chr11 110405766 110405946 -38377526 + L1ME4a LINE L1 5705 5906 -215 369 0 0 0 chr11 110405967 110406008 -38377464 + (TG)n Simple_repeat Simple_repeat 1 41 0 2395 80 7 0 chr11 110406108 110406409 -38377063 - AluSp SINE Alu -10 303 1 265 197 0 0 chr11 110406539 110406600 -38376872 - FLAM SINE Alu -2 131 71 334 327 20 7 chr11 110406652 110406805 -38376667 - L1MC/D LINE L1 -2215 5593 5439 1818 158 45 3 chr11 110406807 110407099 -38376373 - AluJo SINE Alu -8 304 1 2421 79 3 3 chr11 110407103 110407406 -38376066 - AluSp SINE Alu -10 303 1 201 147 0 0 chr11 110407906 110407940 -38375532 + (T)n Simple_repeat Simple_repeat 1 34 0 2339 110 0 0 chr11 110408178 110408486 -38374986 + AluSx SINE Alu 1 308 -4 736 358 147 11 chr11 110408774 110409377 -38374095 - L2 LINE L2 -26 3246 2560 1966 172 13 28 chr11 110409379 110409768 -38373704 + MLT1B LTR MaLR 1 383 -7 2036 147 0 13 chr11 110409909 110410222 -38373250 - AluSx SINE Alu -3 309 1 815 67 0 0 chr11 110410754 110410859 -38372613 - AluY SINE Alu -8 303 199 553 67 13 0 chr11 110410860 110410935 -38372537 + AluY SINE Alu 127 202 -109 2282 103 7 0 chr11 110410935 110411237 -38372235 - AluSg SINE Alu -6 304 1 448 227 195 45 chr11 110413241 110413592 -38369880 + MLT1H1 LTR MaLR 152 549 0 2218 107 3 10 chr11 110413614 110413922 -38369550 + AluSg SINE Alu 1 306 -4 505 306 38 2 chr11 110414452 110414657 -38368815 - MIR SINE MIR -12 250 34 595 257 203 2 chr11 110414709 110415133 -38368339 + L1ME3A LINE L1 4514 5022 -1124 1896 138 13 39 chr11 110415151 110415463 -38368009 + AluJb SINE Alu 1 304 -8 333 281 41 3 chr11 110415513 110415666 -38367806 + L1ME3A LINE L1 5291 5447 -717 441 240 140 86 chr11 110415682 110416016 -38367456 + L1ME3A LINE L1 5587 5938 -232 2089 231 77 12 chr11 110416036 110416555 -38366917 + MLT1H1 LTR MaLR 1 553 -2 316 98 20 0 chr11 110416591 110416642 -38366830 + AluJ SINE Alu 85 136 -166 1801 120 39 0 chr11 110416657 110416915 -38366557 + AluSq SINE Alu 23 290 -23 1023 169 6 17 chr11 110416926 110417104 -38366368 + AluJ SINE Alu 131 306 -6 482 261 210 67 chr11 110417681 110418010 -38365462 + L2 LINE L2 2933 3308 -5 1822 111 4 32 chr11 110418152 110418431 -38365041 - AluSg SINE Alu -1 309 39 2490 69 0 7 chr11 110418555 110418861 -38364611 + AluY SINE Alu 1 304 -7 1981 143 3 3 chr11 110419020 110419314 -38364158 + AluJo SINE Alu 1 294 -18 2368 49 0 3 chr11 110419319 110419626 -38363846 + AluY SINE Alu 1 306 0 29 0 0 0 chr11 110419749 110419778 -38363694 + AT_rich Low_complexity Low_complexity 1 29 0 2292 92 7 3 chr11 110419968 110420274 -38363198 - AluSg SINE Alu -3 307 1 567 201 222 28 chr11 110420277 110420421 -38363051 + MER5A DNA MER1_type 2 173 -16 348 364 172 7 chr11 110421131 110421422 -38362050 - L2 LINE L2 0 3272 2934 333 0 0 0 chr11 110421857 110421894 -38361578 + (TG)n Simple_repeat Simple_repeat 2 38 0 2726 10 0 3 chr11 110421949 110422253 -38361219 + AluYa5 SINE Alu 1 303 -8 751 283 28 40 chr11 110422964 110423215 -38360257 + MIR SINE MIR 8 255 -7 297 0 0 0 chr11 110424969 110425002 -38358470 + (TG)n Simple_repeat Simple_repeat 2 34 0 1811 181 36 0 chr11 110426640 110426972 -38356500 + MER7A DNA MER2_type 4 345 -1 189 0 0 0 chr11 110427234 110427255 -38356217 + (T)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chr11 110428010 110428031 -38355441 + AT_rich Low_complexity Low_complexity 1 21 0 273 308 75 9 chr11 110428140 110428247 -38355225 - MIR SINE MIR -119 143 30 38 0 0 0 chr11 110428751 110428789 -38354683 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr11 110429290 110429320 -38354152 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr11 110429602 110429623 -38353849 + AT_rich Low_complexity Low_complexity 1 21 0 180 111 0 0 chr11 110430390 110430417 -38353055 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 1778 170 52 12 chr11 110430912 110431242 -38352230 - MER2 DNA MER2_type 0 344 2 363 282 16 80 chr11 110431381 110431569 -38351903 + L3 LINE CR1 1126 1301 -276 820 128 0 0 chr11 110433259 110433384 -38350088 - AluSg/x SINE Alu 0 312 188 1286 134 5 0 chr11 110433384 110433570 -38349902 + AluSg/x SINE Alu 106 292 -18 955 192 24 96 chr11 110435856 110435962 -38347510 + Tigger7 DNA MER2_type 1 113 -620 1764 158 22 35 chr11 110435962 110436273 -38347199 + AluJo SINE Alu 1 307 -5 955 192 24 96 chr11 110436273 110436458 -38347014 + Tigger7 DNA MER2_type 113 271 -462 460 141 0 12 chr11 110436472 110436557 -38346915 + Tigger7 DNA MER2_type 2408 2491 0 1447 166 8 8 chr11 110436595 110436848 -38346624 - AluJb SINE Alu -3 309 57 1891 144 6 22 chr11 110436944 110437256 -38346216 + AluSx SINE Alu 1 307 -5 198 0 0 0 chr11 110437514 110437536 -38345936 + (A)n Simple_repeat Simple_repeat 1 22 0 319 238 100 54 chr11 110437742 110437944 -38345528 + MIR SINE MIR 38 249 -13 431 203 236 20 chr11 110438976 110439124 -38344348 + MER5A DNA MER1_type 10 189 0 255 254 0 32 chr11 110441109 110441172 -38342300 + MER5A DNA MER1_type 2 62 -127 222 261 0 0 chr11 110443038 110443084 -38340388 + (TA)n Simple_repeat Simple_repeat 1 46 0 180 281 133 39 chr11 110444514 110444642 -38338830 + L2 LINE L2 2920 3059 -213 222 286 91 0 chr11 110444939 110445016 -38338456 - MIR3 SINE MIR -4 204 121 276 346 66 29 chr11 110445642 110445778 -38337694 - MIR3 SINE MIR -51 157 17 309 297 158 0 chr11 110445858 110445959 -38337513 - L2 LINE L2 -15 3257 3141 337 154 0 90 chr11 110446318 110446396 -38337076 - MER20 DNA MER1_type -147 72 2 1911 120 6 89 chr11 110446426 110446750 -38336722 + AluSg SINE Alu 1 297 -13 208 333 52 44 chr11 110446872 110447007 -38336465 - L2 LINE L2 -4 3268 3133 2296 95 10 0 chr11 110447269 110447575 -38335897 + AluSx SINE Alu 1 309 -3 884 136 223 55 chr11 110447677 110447897 -38335575 - AluJb SINE Alu -55 257 1 24 0 0 0 chr11 110447921 110447945 -38335527 + AT_rich Low_complexity Low_complexity 1 24 0 491 253 11 33 chr11 110448021 110448203 -38335269 + MARNA DNA Mariner 383 560 -26 363 328 65 15 chr11 110448322 110448523 -38334949 - L2 LINE L2 -12 3301 3091 1227 221 98 8 chr11 110448531 110448898 -38334574 - MLT1C LTR MaLR -67 400 1 22 0 0 0 chr11 110449026 110449048 -38334424 + AT_rich Low_complexity Low_complexity 1 22 0 217 227 0 0 chr11 110449131 110449175 -38334297 - L2 LINE L2 0 3313 3270 1530 158 92 18 chr11 110449271 110449543 -38333929 + AluJo SINE Alu 1 292 -20 362 290 156 21 chr11 110449595 110449781 -38333691 - MIR SINE MIR -32 230 20 212 404 0 0 chr11 110450080 110450174 -38333298 - L2 LINE L2 -206 3066 2973 * 488 307 205 35 chr11 110450169 110450710 -38332762 - L2 LINE L2 -461 2853 2221 369 175 113 88 chr11 110450779 110450973 -38332499 - MLT1J LTR MaLR -310 201 3 25 31 0 0 chr11 110451044 110451076 -38332396 + AT_rich Low_complexity Low_complexity 1 32 0 186 43 0 0 chr11 110451107 110451130 -38332342 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 870 144 0 0 chr11 110451134 110451252 -38332220 - FLAM_C SINE Alu -25 118 1 318 182 15 30 chr11 110451927 110451993 -38331479 + L2 LINE L2 3169 3233 -80 409 266 77 56 chr11 110452114 110452347 -38331125 + L2 LINE L2 2511 2748 -566 2233 99 0 31 chr11 110452349 110452671 -38330801 + AluSx SINE Alu 1 312 0 2122 103 3 7 chr11 110452671 110452953 -38330519 + AluSp SINE Alu 1 281 -32 315 0 0 0 chr11 110452955 110452990 -38330482 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 645 183 7 51 chr11 110453006 110453143 -38330329 + FLAM_C SINE Alu 6 136 -7 228 213 0 33 chr11 110453398 110453459 -38330013 - MER63 DNA MER1_type -25 1036 978 328 81 128 116 chr11 110453477 110453563 -38329909 - MER63 DNA MER1_type -122 714 2 2120 137 7 0 chr11 110453854 110454154 -38329318 + AluSx SINE Alu 1 302 -10 2061 123 3 0 chr11 110454256 110454541 -38328931 - AluSg SINE Alu -24 286 1 185 233 0 17 chr11 110454914 110454974 -38328498 + GA-rich Low_complexity Low_complexity 1 59 0 2726 87 0 6 chr11 110455313 110455670 -38327802 - THE1A LTR MaLR 0 355 1 11499 87 21 1 chr11 110455672 110457219 -38326253 - THE1A-int LTR MaLR -2 1578 1 2694 93 0 0 chr11 110457219 110457574 -38325898 - THE1A LTR MaLR 0 355 1 260 206 29 0 chr11 110457612 110457680 -38325792 + MER116 DNA Mariner 9 78 -2 340 290 65 27 chr11 110458048 110458199 -38325273 + HAL1 LINE L1 931 1092 -1415 2232 123 0 13 chr11 110458199 110458515 -38324957 + AluSx SINE Alu 1 312 0 340 290 65 27 chr11 110458515 110458549 -38324923 + HAL1 LINE L1 1092 1123 -1384 207 0 0 0 chr11 110458662 110458685 -38324787 + (A)n Simple_repeat Simple_repeat 1 23 0 224 229 86 0 chr11 110461073 110461143 -38322329 + MIR SINE MIR 91 166 -96 184 337 33 11 chr11 110461385 110461474 -38321998 + MIR SINE MIR 162 252 -10 675 296 150 0 chr11 110461474 110461700 -38321772 + MIR SINE MIR 3 262 0 330 195 37 0 chr11 110461930 110462012 -38321460 - HsTC2 DNA Tc2 -1811 87 3 740 169 0 0 chr11 110462340 110462458 -38321014 + FLAM_C SINE Alu 1 118 -25 207 194 0 0 chr11 110463705 110463741 -38319731 + GA-rich Low_complexity Low_complexity 1 36 0 321 145 0 0 chr11 110463745 110463807 -38319665 + (TG)n Simple_repeat Simple_repeat 2 63 0 948 183 0 6 chr11 110463981 110464145 -38319327 + FAM SINE Alu 11 173 -12 2405 68 0 0 chr11 110464145 110464441 -38319031 + AluY SINE Alu 1 296 -15 182 304 116 0 chr11 110464575 110464644 -38318828 + MIR SINE MIR 31 107 -155 643 149 22 30 chr11 110464646 110464780 -38318692 + MER3 DNA MER1_type 1 133 -76 2226 117 3 0 chr11 110465109 110465407 -38318065 + AluSp SINE Alu 1 299 -14 638 261 142 4 chr11 110465407 110465667 -38317805 + L3b LINE CR1 1109 1404 -179 2144 91 11 11 chr11 110465691 110465976 -38317496 - AluSx SINE Alu -22 290 6 1896 156 3 3 chr11 110466000 110466302 -38317170 - AluJb SINE Alu -10 302 1 2266 99 3 0 chr11 110466332 110466625 -38316847 + AluSg SINE Alu 1 294 -16 2061 124 24 0 chr11 110466695 110466985 -38316487 + AluSx SINE Alu 1 297 -15 874 154 19 136 chr11 110467271 110467335 -38316137 - MER5A DNA MER1_type 0 189 119 2252 115 3 0 chr11 110467335 110467640 -38315832 + AluSp SINE Alu 2 307 -6 874 154 19 136 chr11 110467640 110467789 -38315683 - MER5A DNA MER1_type -70 119 1 2321 98 10 3 chr11 110468348 110468654 -38314818 - AluSg SINE Alu -2 308 1 2425 90 3 3 chr11 110468825 110469135 -38314337 - AluSg SINE Alu 0 310 1 733 188 0 36 chr11 110469690 110469828 -38313644 + Tigger3(Golem) DNA MER2_type 10 142 -2887 * 1582 152 0 0 chr11 110469825 110470082 -38313390 + Tigger3(Golem) DNA MER2_type 2771 3027 -2 2082 75 0 4 chr11 110470192 110470447 -38313025 - AluSx SINE Alu -21 291 38 1847 65 97 50 chr11 110471006 110471285 -38312187 - AluSc SINE Alu -17 292 1 486 248 121 13 chr11 110471491 110471648 -38311824 + MER5A DNA MER1_type 15 188 -1 533 270 143 30 chr11 110471831 110472061 -38311411 + MIR SINE MIR 1 256 -6 242 227 101 4 chr11 110472474 110472593 -38310879 + L2 LINE L2 2559 2741 -573 568 260 89 35 chr11 110472617 110472786 -38310686 + L2 LINE L2 2848 3025 -288 2022 155 0 0 chr11 110472900 110473204 -38310268 - AluSq SINE Alu -9 304 1 2040 141 30 0 chr11 110473505 110473803 -38309669 - AluSx SINE Alu -4 308 2 1328 198 18 103 chr11 110473855 110474254 -38309218 - MLT1A1 LTR MaLR 0 365 1 2091 114 0 23 chr11 110474936 110475235 -38308237 - AluSx SINE Alu -20 292 1 717 262 86 18 chr11 110475438 110475659 -38307813 - MIR SINE MIR 0 262 27 240 135 32 183 chr11 110476033 110476159 -38307313 + L1MB8 LINE L1 6072 6178 0 2551 71 0 0 chr11 110476651 110476960 -38306512 - AluY SINE Alu -2 309 1 346 224 9 37 chr11 110477077 110477184 -38306288 + MLT1K LTR MaLR 479 582 -6 235 214 0 18 chr11 110477188 110477244 -38306228 + MIR SINE MIR 157 211 -51 2249 111 7 3 chr11 110477273 110477570 -38305902 + AluSx SINE Alu 1 298 -14 535 264 43 49 chr11 110477575 110477754 -38305718 + L1M4 LINE L1 3047 3225 -2921 2198 107 3 0 chr11 110477754 110478052 -38305420 + AluSp SINE Alu 1 299 -14 535 264 43 49 chr11 110478052 110478240 -38305232 + L1M4 LINE L1 3225 3412 -2734 1043 270 63 73 chr11 110478277 110478329 -38305143 + L1M4 LINE L1 3545 3596 -2550 2309 108 0 0 chr11 110478329 110478625 -38304847 + AluSx SINE Alu 1 296 -16 1043 270 63 73 chr11 110478625 110479466 -38304006 + L1M4 LINE L1 3596 4444 -1702 1842 152 21 7 chr11 110479466 110479756 -38303716 - AluSx SINE Alu -16 296 3 984 211 58 10 chr11 110479764 110479972 -38303500 - MER20 DNA MER1_type -1 218 1 1043 270 63 73 chr11 110479972 110480143 -38303329 + L1M4 LINE L1 4451 4608 -1538 2368 92 0 3 chr11 110480150 110480455 -38303017 + AluSq SINE Alu 1 304 -9 41 48 0 0 chr11 110480628 110480690 -38302782 + AT_rich Low_complexity Low_complexity 1 62 0 763 258 65 49 chr11 110481007 110481375 -38302097 + MLT1A2 LTR MaLR 1 374 0 1855 145 7 10 chr11 110481550 110481840 -38301632 + AluJb SINE Alu 1 289 -23 2101 99 7 0 chr11 110481958 110482270 -38301202 - AluSx SINE Alu 0 314 1 1591 122 0 0 chr11 110483011 110483225 -38300247 - AluSg/x SINE Alu -12 298 85 262 247 43 32 chr11 110483450 110483543 -38299929 + MER94 DNA DNA 11 104 -30 214 352 29 29 chr11 110483578 110483683 -38299789 - L2 LINE L2 -30 3242 3138 234 0 0 0 chr11 110484402 110484428 -38299044 + (A)n Simple_repeat Simple_repeat 1 26 0 202 229 52 94 chr11 110485096 110485192 -38298280 - L3 LINE CR1 -6 1571 1480 321 242 0 40 chr11 110487218 110487317 -38296155 - MIR3 SINE MIR -1 207 113 216 360 54 27 chr11 110488003 110488114 -38295358 - L2 LINE L2 -155 3117 3004 2264 109 0 0 chr11 110488349 110488642 -38294830 - AluSg SINE Alu -17 293 1 289 329 78 95 chr11 110489497 110490103 -38293369 - L2 LINE L2 -16 3256 2669 2221 122 0 0 chr11 110490103 110490406 -38293066 + AluSx SINE Alu 2 304 -8 289 329 78 95 chr11 110490406 110490701 -38292771 - L2 LINE L2 -603 2669 2370 270 0 0 0 chr11 110490750 110490780 -38292692 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2037 116 3 3 chr11 110490782 110491066 -38292406 - AluSx SINE Alu -28 284 1 2519 80 0 0 chr11 110491212 110491514 -38291958 - AluSp SINE Alu -11 302 1 2307 92 0 0 chr11 110491984 110492276 -38291196 - AluSx SINE Alu -20 292 1 234 0 0 0 chr11 110492386 110492412 -38291060 + (A)n Simple_repeat Simple_repeat 1 26 0 1124 114 6 0 chr11 110492412 110492615 -38290857 + AluY SINE Alu 119 322 0 279 233 19 68 chr11 110492618 110492721 -38290751 + MIR SINE MIR 159 256 -6 270 305 0 0 chr11 110492988 110493047 -38290425 + L2 LINE L2 3204 3262 -51 190 285 32 89 chr11 110493256 110493379 -38290093 - L3 LINE CR1 -751 826 711 4898 23 0 0 chr11 110493561 110494127 -38289345 + L1PA3 LINE L1 5586 6151 -4 180 369 71 27 chr11 110494343 110494568 -38288904 - L2 LINE L2 -475 2839 2605 2003 141 3 0 chr11 110495008 110495298 -38288174 - AluSx SINE Alu -21 291 1 364 274 98 0 chr11 110495300 110495402 -38288070 - L2 LINE L2 -13 3300 3189 201 74 0 0 chr11 110496042 110496069 -38287403 + (A)n Simple_repeat Simple_repeat 1 27 0 1532 267 95 13 chr11 110496089 110496568 -38286904 - L1MEc LINE L1 -3156 3059 2621 1549 192 8 0 chr11 110496568 110496828 -38286644 + AluJb SINE Alu 1 262 -50 1532 267 95 13 chr11 110496828 110497356 -38286116 - L1MEc LINE L1 -3594 2621 2014 2239 93 7 3 chr11 110497389 110497678 -38285794 - AluSg SINE Alu -20 290 1 1092 90 0 0 chr11 110497678 110497812 -38285660 - AluSg SINE Alu -176 134 1 26 64 0 0 chr11 110497894 110497941 -38285531 + AT_rich Low_complexity Low_complexity 1 47 0 357 271 8 15 chr11 110498007 110498038 -38285434 - L1MEc LINE L1 -4638 1758 1728 1638 190 3 17 chr11 110498038 110498333 -38285139 - AluJb SINE Alu -20 292 2 357 271 8 15 chr11 110498333 110498434 -38285038 - L1MEc LINE L1 -4668 1728 1627 623 165 55 0 chr11 110498454 110498563 -38284909 - FLAM_C SINE Alu -27 116 2 308 242 75 129 chr11 110498564 110498635 -38284837 - L1MEc LINE L1 -4751 1645 1572 1841 166 7 3 chr11 110498635 110498930 -38284542 - AluJo SINE Alu -16 296 1 308 242 75 129 chr11 110498930 110499433 -38284039 - L1MEc LINE L1 -4824 1572 1102 1589 170 65 7 chr11 110499786 110499921 -38283551 + AluJo SINE Alu 1 127 -185 1961 112 70 0 chr11 110499921 110500208 -38283264 + AluSg SINE Alu 1 307 -3 1589 170 65 7 chr11 110500208 110500349 -38283123 + AluJo SINE Alu 127 293 -19 236 218 26 0 chr11 110500378 110500456 -38283016 + L1MC4 LINE L1 6614 6693 -1349 239 309 0 0 chr11 110500549 110500633 -38282839 + L1MD1 LINE L1 5994 6077 -165 2086 130 7 0 chr11 110500639 110500965 -38282507 - AluSx SINE Alu 0 328 1 1827 171 10 0 chr11 110500975 110501273 -38282199 - AluJb SINE Alu -11 301 1 1304 155 26 63 chr11 110501274 110501577 -38281895 + L1MD2 LINE L1 6066 6357 -2 2327 138 11 0 chr11 110501735 110502096 -38281376 + MER47A DNA MER2_type 1 365 -1 477 289 23 8 chr11 110502157 110502285 -38281187 + MIR SINE MIR 30 159 -103 310 298 97 57 chr11 110502462 110502690 -38280782 + MLT1K LTR MaLR 93 329 -259 2381 67 0 10 chr11 110502835 110503148 -38280324 - AluY SINE Alu 0 311 2 565 248 52 7 chr11 110503148 110503301 -38280171 - MIR SINE MIR -97 165 6 199 232 232 18 chr11 110503908 110503964 -38279508 - L2 LINE L2 -2 3270 3203 2270 89 3 3 chr11 110504371 110504662 -38278810 - AluSc SINE Alu -18 291 1 45 19 0 0 chr11 110505343 110505395 -38278077 + AT_rich Low_complexity Low_complexity 1 52 0 2167 112 0 0 chr11 110505395 110505681 -38277791 - AluSg SINE Alu -24 286 1 1811 139 33 23 chr11 110505989 110506290 -38277182 - AluSq SINE Alu -3 310 7 367 330 30 0 chr11 110506291 110506391 -38277081 + L2 LINE L2 3170 3272 0 2276 78 14 0 chr11 110506487 110506783 -38276689 - AluY SINE Alu -10 301 2 184 323 31 0 chr11 110507418 110507483 -38275989 - MIR SINE MIR -84 124 58 344 277 109 0 chr11 110507568 110507687 -38275785 + MIR SINE MIR 75 206 -56 2063 75 67 0 chr11 110507698 110507988 -38275484 + AluSp SINE Alu 1 308 0 25 51 0 0 chr11 110508158 110508197 -38275275 + AT_rich Low_complexity Low_complexity 1 39 0 759 168 8 8 chr11 110508267 110508398 -38275074 - FLAM_C SINE Alu -2 131 1 291 271 89 44 chr11 110508408 110508607 -38274865 - MIR SINE MIR -55 207 1 201 233 0 23 chr11 110508759 110508802 -38274670 + polypurine Low_complexity Low_complexity 1 42 0 309 229 19 38 chr11 110509155 110509260 -38274212 + L1ME3 LINE L1 6045 6147 -15 2323 106 0 3 chr11 110509388 110509699 -38273773 + AluSx SINE Alu 1 310 -2 2013 167 0 6 chr11 110510224 110510535 -38272937 + AluJb SINE Alu 1 309 -3 2121 112 0 40 chr11 110510542 110510864 -38272608 + AluSx SINE Alu 1 309 -3 234 174 0 0 chr11 110511291 110511337 -38272135 + (TG)n Simple_repeat Simple_repeat 2 47 0 677 137 0 0 chr11 110513293 110513388 -38270084 - FLAM_A SINE Alu -8 134 40 1425 184 37 31 chr11 110513410 110513704 -38269768 + AluJo SINE Alu 1 296 -16 12783 160 46 114 chr11 110513819 110515816 -38267656 + L1M2 LINE L1 2 1823 -5025 920 110 22 29 chr11 110515816 110515952 -38267520 + AluJb SINE Alu 1 135 -177 12783 160 46 114 chr11 110515952 110517900 -38265572 + L1M2 LINE L1 1823 3902 -2946 210 139 0 28 chr11 110518248 110518284 -38265188 + (TCCC)n Simple_repeat Simple_repeat 3 37 0 875 208 0 0 chr11 110518452 110518601 -38264871 - AluJb SINE Alu -30 282 134 2233 114 0 0 chr11 110518601 110518898 -38264574 - AluSx SINE Alu -15 297 1 37 0 0 0 chr11 110518906 110518943 -38264529 + AT_rich Low_complexity Low_complexity 1 37 0 2129 147 0 6 chr11 110519600 110519914 -38263558 - AluSx SINE Alu 0 312 1 489 282 218 5 chr11 110520250 110520456 -38263016 - MIR SINE MIR -10 252 3 1322 164 0 9 chr11 110520492 110520711 -38262761 - AluJo SINE Alu -10 302 86 207 332 20 89 chr11 110520748 110520950 -38262522 - MIR SINE MIR -58 204 17 1581 159 19 78 chr11 110521052 110521361 -38262111 - AluJb SINE Alu -21 291 1 513 216 112 0 chr11 110521434 110521550 -38261922 - MER20 DNA MER1_type 0 219 91 22 80 0 0 chr11 110522052 110522102 -38261370 + AT_rich Low_complexity Low_complexity 1 50 0 1888 116 43 56 chr11 110522144 110522446 -38261026 + AluSx SINE Alu 1 298 -14 2260 94 3 3 chr11 110522636 110522933 -38260539 - AluSp SINE Alu -16 297 1 1473 127 87 84 chr11 110523017 110523312 -38260160 + AluSx SINE Alu 6 301 0 242 204 61 0 chr11 110524260 110524309 -38259163 + MLT1B LTR MaLR 1 52 -313 539 191 63 16 chr11 110524322 110524448 -38259024 + MLT1A2 LTR MaLR 3 134 -240 2244 175 22 24 chr11 110524517 110524580 -38258892 - MLT-int LTR MaLR -15 1720 1658 1667 181 34 0 chr11 110524580 110524872 -38258600 - AluJo SINE Alu -10 302 1 2244 175 22 24 chr11 110524872 110525220 -38258252 - MLT-int LTR MaLR -77 1658 1310 295 169 17 0 chr11 110525385 110525444 -38258028 - MLT-int LTR MaLR -1000 735 676 2123 217 40 9 chr11 110525554 110526005 -38257467 - MLT1A2-int LTR MaLR -639 732 268 570 163 0 0 chr11 110526012 110526104 -38257368 - MLT1A2-int LTR MaLR -1279 92 1 1710 199 47 19 chr11 110526106 110526468 -38257004 - MLT1A2 LTR MaLR -2 372 1 428 304 82 16 chr11 110526696 110526880 -38256592 + MIR SINE MIR 57 252 -10 1483 97 78 144 chr11 110528001 110528145 -38255327 + AluSx SINE Alu 1 114 -198 2105 122 7 3 chr11 110528145 110528432 -38255040 + AluSx SINE Alu 1 288 -24 1483 97 78 144 chr11 110528432 110528606 -38254866 + AluSx SINE Alu 114 298 -14 1958 129 10 3 chr11 110528757 110529052 -38254420 - AluSx SINE Alu -15 297 1 258 32 0 0 chr11 110529092 110529123 -38254349 + (CA)n Simple_repeat Simple_repeat 2 32 0 700 154 0 0 chr11 110529996 110530100 -38253372 + U13 snRNA snRNA 1 104 0 23 0 0 0 chr11 110530109 110530132 -38253340 + AT_rich Low_complexity Low_complexity 1 23 0 438 214 61 71 chr11 110530137 110530333 -38253139 - LTR67 LTR ERVL -17 540 347 306 54 0 0 chr11 110530331 110530368 -38253104 - U2 snRNA snRNA -151 37 1 * 437 175 125 0 chr11 110530407 110530487 -38252985 - 5S rRNA rRNA -31 90 1 393 81 306 0 chr11 110530489 110530551 -38252921 - 5S rRNA rRNA -40 81 1 317 365 22 7 chr11 110530617 110530754 -38252718 - LTR67 LTR ERVL -296 261 123 2158 115 0 10 chr11 110531038 110531351 -38252121 - AluSq SINE Alu -3 310 1 23 0 0 0 chr11 110531356 110531379 -38252093 + AT_rich Low_complexity Low_complexity 1 23 0 296 160 0 0 chr11 110531388 110531438 -38252034 - U13 snRNA snRNA 0 104 55 1941 127 4 7 chr11 110531481 110531757 -38251715 + AluSx SINE Alu 1 275 -37 291 85 0 0 chr11 110531763 110531810 -38251662 + (CAAA)n Simple_repeat Simple_repeat 2 48 0 652 308 92 35 chr11 110531817 110532252 -38251220 + L1MC/D LINE L1 5361 5820 -1988 451 295 9 0 chr11 110532262 110532374 -38251098 + L2 LINE L2 3192 3304 -9 2559 44 10 0 chr11 110532437 110532733 -38250739 + AluY SINE Alu 1 299 -12 1709 157 39 7 chr11 110532757 110533043 -38250429 + AluJb SINE Alu 1 295 -17 2357 91 0 3 chr11 110533126 110533424 -38250048 + AluSg SINE Alu 1 297 -13 1951 248 127 14 chr11 110533701 110534782 -38248690 + L1ME3 LINE L1 4600 5829 -333 2166 61 69 4 chr11 110534973 110535250 -38248222 + AluSx SINE Alu 1 295 -17 2265 110 0 3 chr11 110535352 110535661 -38247811 - AluSx SINE Alu -3 309 2 526 223 121 27 chr11 110535905 110536129 -38247343 - HAL1 LINE L1 -1163 1344 1100 1425 189 3 53 chr11 110536129 110536447 -38247025 - AluSx SINE Alu -10 302 1 1682 128 78 25 chr11 110536450 110536731 -38246741 - AluJb SINE Alu -16 296 1 183 184 0 0 chr11 110536765 110536803 -38246669 + T-rich Low_complexity Low_complexity 1 38 0 288 282 14 0 chr11 110537099 110537170 -38246302 + L2 LINE L2 3229 3300 -13 1585 157 36 20 chr11 110537172 110537478 -38245994 + AluY SINE Alu 1 311 0 635 293 143 6 chr11 110537478 110537813 -38245659 + HAL1 LINE L1 1533 1913 -594 229 162 101 142 chr11 110537855 110538003 -38245469 + HAL1 LINE L1 2057 2198 -309 393 140 28 84 chr11 110538028 110538135 -38245337 + HAL1 LINE L1 2297 2397 -110 225 94 0 0 chr11 110538317 110538349 -38245123 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 2341 99 3 0 chr11 110540438 110540742 -38242730 + AluSp SINE Alu 1 305 -8 416 161 12 0 chr11 110540868 110540949 -38242523 + GA-rich Low_complexity Low_complexity 4 85 0 1512 145 9 4 chr11 110541211 110541439 -38242033 - AluSx SINE Alu -83 229 1 2560 10 7 10 chr11 110541936 110542231 -38241241 + AluYa5 SINE Alu 1 294 -17 187 273 23 0 chr11 110542665 110542709 -38240763 + L2 LINE L2 2710 2754 -560 234 281 99 41 chr11 110542978 110543099 -38240373 + L2 LINE L2 3186 3313 0 312 219 160 0 chr11 110543897 110544016 -38239456 - L1MC4 LINE L1 -143 7899 7762 295 235 10 98 chr11 110544355 110544457 -38239015 - L2 LINE L2 0 3313 3221 252 86 0 0 chr11 110545617 110545652 -38237820 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 2272 94 0 3 chr11 110545933 110546231 -38237241 + AluSx SINE Alu 2 298 -14 2641 251 81 75 chr11 110546241 110547180 -38236292 + L1MCc LINE L1 186 1163 -5439 1555 146 4 20 chr11 110547180 110547456 -38236016 + AluJb SINE Alu 35 306 0 2641 251 81 75 chr11 110547456 110548011 -38235461 + L1MCc LINE L1 1163 1713 -4889 447 266 13 7 chr11 110547998 110548152 -38235320 + L1ME3A LINE L1 5808 5962 -208 * 1670 168 9 25 chr11 110598517 110598833 -38184639 - AluJo SINE Alu -1 311 1 2062 135 3 3 chr11 110599230 110599541 -38183931 + AluSx SINE Alu 1 311 -1 1531 75 5 0 chr11 110599548 110599747 -38183725 + AluSg SINE Alu 1 200 -110 529 246 126 6 chr11 110599847 110600015 -38183457 - L3b LINE CR1 -285 1298 1107 2110 117 3 0 chr11 110600015 110600313 -38183159 - AluSp SINE Alu -14 299 1 699 144 222 24 chr11 110600609 110600776 -38182696 - MER3 DNA MER1_type -9 200 1 2333 70 0 0 chr11 110600978 110601277 -38182195 - AluY SINE Alu -12 299 1 1730 102 0 4 chr11 110601384 110601629 -38181843 + AluSg/x SINE Alu 67 310 -2 1886 167 0 6 chr11 110602135 110602446 -38181026 + AluJb SINE Alu 1 309 -3 1482 139 3 46 chr11 110602453 110602756 -38180716 + AluSx SINE Alu 1 290 -22 21 0 0 0 chr11 110602759 110602780 -38180692 + AT_rich Low_complexity Low_complexity 1 21 0 281 98 39 20 chr11 110602944 110602995 -38180477 - AluJo SINE Alu -166 136 85 2134 231 77 12 chr11 110603031 110603550 -38179922 - MLT1H1 LTR MaLR -2 553 1 518 240 140 86 chr11 110603570 110603904 -38179568 - L1ME3A LINE L1 -232 5938 5587 364 280 42 0 chr11 110603920 110604059 -38179413 - L1ME3A LINE L1 -715 5447 5300 1250 205 13 39 chr11 110604123 110604435 -38179037 - AluJb SINE Alu -8 304 1 21 36 0 0 chr11 110604741 110604769 -38178703 + GC_rich Low_complexity Low_complexity 1 28 0 213 93 0 70 chr11 110604771 110604814 -38178658 + (CCCCCG)n Simple_repeat Simple_repeat 3 42 0 263 243 27 14 chr11 110604915 110604989 -38178483 + CT-rich Low_complexity Low_complexity 4 78 0 29 0 0 0 chr11 110605053 110605082 -38178390 + GC_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr11 110605105 110605136 -38178336 + GC_rich Low_complexity Low_complexity 1 31 0 263 135 32 183 chr11 110606086 110606212 -38177260 - L1MB8 LINE L1 0 6178 6072 743 205 24 78 chr11 110606667 110606872 -38176600 - MLT1A1 LTR MaLR -171 194 1 1985 114 0 23 chr11 110607554 110607853 -38175619 - AluSx SINE Alu -20 292 1 376 257 55 18 chr11 110608056 110608165 -38175307 - MIR SINE MIR 0 262 150 1097 153 0 6 chr11 110608270 110608453 -38175019 + AluSg/x SINE Alu 131 312 0 1641 121 78 25 chr11 110608496 110608777 -38174695 + AluJb SINE Alu 1 296 -16 1335 189 3 53 chr11 110608780 110609098 -38174374 + AluSx SINE Alu 1 302 -10 500 223 121 27 chr11 110609098 110609322 -38174150 + HAL1 LINE L1 1100 1344 -1163 831 146 29 0 chr11 110609566 110609703 -38173769 + AluSq/x SINE Alu 2 142 -171 240 214 0 18 chr11 110609887 110609943 -38173529 + MIR SINE MIR 157 211 -51 2175 104 3 0 chr11 110609972 110610269 -38173203 + AluSx SINE Alu 1 298 -14 368 274 98 0 chr11 110610820 110610922 -38172550 + L2 LINE L2 3189 3300 -13 1895 141 3 0 chr11 110610924 110611214 -38172258 + AluSx SINE Alu 1 291 -21 1117 199 23 5 chr11 110611722 110611938 -38171534 - AluJo SINE Alu -92 220 1 2410 82 7 0 chr11 110612101 110612405 -38171067 - AluSp SINE Alu -7 306 1 265 197 0 0 chr11 110612535 110612596 -38170876 - FLAM_A SINE Alu -3 130 70 334 327 20 7 chr11 110612648 110612801 -38170671 - L1MC/D LINE L1 -2215 5593 5439 1818 158 45 3 chr11 110612803 110613095 -38170377 - AluJo SINE Alu -8 304 1 2465 79 3 0 chr11 110613099 110613402 -38170070 - AluSp SINE Alu -9 304 1 226 241 0 17 chr11 110613555 110613613 -38169859 + A-rich Low_complexity Low_complexity 3 59 0 308 179 0 71 chr11 110613909 110613993 -38169479 + AluJ/FRAM SINE Alu 225 302 0 2167 112 0 0 chr11 110614307 110614593 -38168879 + AluSg SINE Alu 1 286 -24 45 19 0 0 chr11 110614593 110614645 -38168827 + AT_rich Low_complexity Low_complexity 1 52 0 2190 104 3 3 chr11 110615326 110615623 -38167849 + AluSc SINE Alu 1 297 -12 413 100 0 130 chr11 110615863 110615963 -38167509 + Alu SINE Alu 224 310 -2 234 174 0 0 chr11 110616390 110616436 -38167036 + (TG)n Simple_repeat Simple_repeat 2 47 0 2101 99 7 0 chr11 110618461 110618773 -38164699 - AluSx SINE Alu 0 314 1 1591 122 0 0 chr11 110619514 110619728 -38163744 - AluSg/x SINE Alu -12 298 85 262 247 43 32 chr11 110619953 110620046 -38163426 + MER94 DNA DNA 11 104 -30 214 352 29 29 chr11 110620081 110620186 -38163286 - L2 LINE L2 -30 3242 3138 216 0 0 0 chr11 110620905 110620929 -38162543 + (A)n Simple_repeat Simple_repeat 1 24 0 1614 205 4 4 chr11 110620947 110621225 -38162247 + AluJo SINE Alu 1 278 -34 243 0 0 0 chr11 110621225 110621252 -38162220 + (CAAT)n Simple_repeat Simple_repeat 4 30 0 289 329 55 89 chr11 110621542 110622056 -38161416 + L2 LINE L2 2761 3256 -16 2321 98 10 3 chr11 110622290 110622596 -38160876 + AluSg SINE Alu 1 308 -2 852 159 19 136 chr11 110623155 110623304 -38160168 + MER5A DNA MER1_type 1 119 -70 2197 121 3 0 chr11 110623304 110623609 -38159863 - AluSp SINE Alu -6 307 2 852 159 19 136 chr11 110623609 110623673 -38159799 + MER5A DNA MER1_type 119 189 0 1969 125 31 0 chr11 110623950 110624238 -38159234 - AluSx SINE Alu -15 297 1 1185 113 0 0 chr11 110624308 110624467 -38159005 - AluSg/x SINE Alu -16 296 138 21 0 0 0 chr11 110624742 110624763 -38158709 + AT_rich Low_complexity Low_complexity 1 21 0 180 111 0 0 chr11 110625530 110625557 -38157915 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 1778 170 52 12 chr11 110626052 110626382 -38157090 - MER2 DNA MER2_type 0 344 2 363 282 16 80 chr11 110626521 110626709 -38156763 + L3 LINE CR1 1126 1301 -276 664 171 16 8 chr11 110628399 110628528 -38154944 - AluSg/x SINE Alu 0 312 183 999 192 20 92 chr11 110629674 110629780 -38153692 + Tigger7 DNA MER2_type 1 113 -2374 1792 164 22 26 chr11 110629780 110630092 -38153380 + AluJo SINE Alu 1 311 -1 999 192 20 92 chr11 110630092 110630277 -38153195 + Tigger7 DNA MER2_type 113 271 -2216 364 164 0 0 chr11 110630291 110630358 -38153114 + Tigger7 DNA MER2_type 2408 2474 -17 38 0 0 0 chr11 110631025 110631063 -38152409 + AT_rich Low_complexity Low_complexity 1 38 0 273 308 75 9 chr11 110631567 110631674 -38151798 + MIR SINE MIR 30 143 -119 21 0 0 0 chr11 110631783 110631804 -38151668 + AT_rich Low_complexity Low_complexity 1 21 0 294 125 0 0 chr11 110632559 110632607 -38150865 + (A)n Simple_repeat Simple_repeat 1 48 0 357 149 162 0 chr11 110634118 110634192 -38149280 + AluJb SINE Alu 212 297 -5 10368 147 25 155 chr11 110634307 110636304 -38147168 + L1M2 LINE L1 2 1650 -5199 925 110 22 29 chr11 110636304 110636440 -38147032 + AluJb SINE Alu 1 135 -177 10368 147 25 155 chr11 110636440 110637251 -38146221 + L1M2 LINE L1 1650 2564 -4285 185 233 0 17 chr11 110637738 110637798 -38145674 + GA-rich Low_complexity Low_complexity 1 59 0 2726 87 0 6 chr11 110638137 110638494 -38144978 - THE1A LTR MaLR 0 355 1 11499 87 21 1 chr11 110638496 110640043 -38143429 - THE1A-int LTR MaLR -2 1578 1 2694 93 0 0 chr11 110640043 110640398 -38143074 - THE1A LTR MaLR 0 355 1 260 206 29 0 chr11 110640436 110640504 -38142968 + MER116 DNA Mariner 9 78 -2 320 265 82 27 chr11 110640872 110641019 -38142453 + HAL1 LINE L1 931 1085 -1422 1276 133 0 26 chr11 110641023 110641218 -38142254 + AluSx SINE Alu 1 190 -122 2264 109 0 0 chr11 110643077 110643370 -38140102 + AluSg SINE Alu 1 293 -17 216 360 54 27 chr11 110643605 110643716 -38139756 + L2 LINE L2 3004 3117 -155 321 242 0 40 chr11 110644402 110644501 -38138971 + MIR3 SINE MIR 113 207 -1 202 229 52 94 chr11 110646527 110646623 -38136849 + L3 LINE CR1 1480 1571 -6 321 145 0 0 chr11 110647370 110647432 -38136040 + (CA)n Simple_repeat Simple_repeat 2 63 0 207 194 0 0 chr11 110647436 110647472 -38136000 + CT-rich Low_complexity Low_complexity 1 36 0 740 169 0 0 chr11 110648718 110648836 -38134636 - FLAM_C SINE Alu -25 118 1 330 195 37 0 chr11 110649164 110649246 -38134226 + HsTC2 DNA Tc2 3 87 -1811 675 296 150 0 chr11 110649476 110649702 -38133770 - MIR SINE MIR 0 262 3 184 337 33 11 chr11 110649702 110649791 -38133681 - MIR SINE MIR -10 252 162 224 229 86 0 chr11 110650033 110650103 -38133369 - MIR SINE MIR -96 166 91 2288 95 10 0 chr11 110652492 110652797 -38130675 - AluSx SINE Alu -4 308 1 208 333 52 44 chr11 110653059 110653194 -38130278 + L2 LINE L2 3133 3268 -4 1920 120 6 89 chr11 110653316 110653641 -38129831 - AluSg SINE Alu -12 298 1 337 154 0 90 chr11 110653671 110653749 -38129723 + MER20 DNA MER1_type 2 72 -147 309 297 158 0 chr11 110654108 110654209 -38129263 + L2 LINE L2 3141 3257 -15 276 346 66 29 chr11 110654289 110654425 -38129047 + MIR3 SINE MIR 17 157 -51 222 286 91 0 chr11 110655051 110655128 -38128344 + MIR3 SINE MIR 121 204 -4 180 281 133 39 chr11 110655425 110655553 -38127919 - L2 LINE L2 -213 3059 2920 222 261 0 0 chr11 110656985 110657031 -38126441 + (TA)n Simple_repeat Simple_repeat 1 46 0 255 254 0 32 chr11 110658897 110658960 -38124512 - MER5A DNA MER1_type -127 62 2 274 87 0 0 chr11 110660605 110660651 -38122821 + Alu SINE Alu 254 299 -1 2341 99 3 0 chr11 110661387 110661691 -38121781 + AluSp SINE Alu 1 305 -8 319 238 100 54 chr11 110661897 110662099 -38121373 + MIR SINE MIR 38 249 -13 431 203 236 20 chr11 110663131 110663279 -38120193 + MER5A DNA MER1_type 10 189 0 255 254 0 32 chr11 110665264 110665327 -38118145 + MER5A DNA MER1_type 2 62 -127 222 261 0 0 chr11 110667193 110667239 -38116233 + (TA)n Simple_repeat Simple_repeat 1 46 0 180 281 133 39 chr11 110668670 110668798 -38114674 + L2 LINE L2 2920 3059 -213 222 286 91 0 chr11 110669095 110669172 -38114300 - MIR3 SINE MIR -4 204 121 276 346 66 29 chr11 110669798 110669934 -38113538 - MIR3 SINE MIR -51 157 17 309 297 158 0 chr11 110670014 110670115 -38113357 - L2 LINE L2 -15 3257 3141 337 154 0 90 chr11 110670474 110670552 -38112920 - MER20 DNA MER1_type -147 72 2 1911 120 6 89 chr11 110670582 110670906 -38112566 + AluSg SINE Alu 1 297 -13 208 333 52 44 chr11 110671029 110671164 -38112308 - L2 LINE L2 -4 3268 3133 1908 133 7 7 chr11 110671426 110671728 -38111744 + AluSx SINE Alu 1 302 -10 903 203 60 56 chr11 110671966 110672198 -38111274 + MIR SINE MIR 5 237 -25 2181 147 61 24 chr11 110672773 110673182 -38110290 - MSTB LTR MaLR -2 424 1 482 261 210 67 chr11 110673559 110673888 -38109584 + L2 LINE L2 2933 3308 -5 899 138 0 138 chr11 110674030 110674341 -38109131 - AluSg SINE Alu -1 309 42 2606 62 0 0 chr11 110674469 110674776 -38108696 + AluY SINE Alu 1 307 -4 903 203 60 56 chr11 110675311 110675543 -38107929 - MIR SINE MIR -25 237 5 1751 103 8 0 chr11 110675781 110676015 -38107457 - AluSc SINE Alu -10 299 64 2378 100 3 3 chr11 110676701 110677011 -38106461 - AluSg SINE Alu 0 310 1 733 188 0 36 chr11 110677566 110677704 -38105768 + Tigger3(Golem) DNA MER2_type 10 142 -2887 * 1582 152 0 0 chr11 110677701 110677958 -38105514 + Tigger3(Golem) DNA MER2_type 2781 3037 0 2117 75 0 0 chr11 110678068 110678322 -38105150 - AluSx SINE Alu -21 291 38 1847 65 97 50 chr11 110678881 110679160 -38104312 - AluSc SINE Alu -17 292 1 486 248 121 13 chr11 110679366 110679523 -38103949 + MER5A DNA MER1_type 15 188 -1 533 270 143 30 chr11 110679706 110679936 -38103536 + MIR SINE MIR 1 256 -6 242 227 101 4 chr11 110680349 110680468 -38103004 + L2 LINE L2 2559 2741 -573 684 289 66 40 chr11 110680492 110680793 -38102679 + L2 LINE L2 2848 3156 -157 186 80 0 0 chr11 110680807 110680832 -38102640 + MIR SINE MIR 210 234 -28 42 0 0 0 chr11 110681121 110681163 -38102309 + GC_rich Low_complexity Low_complexity 1 42 0 234 0 0 0 chr11 110681168 110681194 -38102278 + (A)n Simple_repeat Simple_repeat 1 26 0 2185 124 0 10 chr11 110681281 110681587 -38101885 - AluSq SINE Alu -10 303 1 2330 109 7 0 chr11 110682503 110682807 -38100665 - AluSx SINE Alu -6 306 1 512 288 106 15 chr11 110684275 110684473 -38098999 - MIR SINE MIR -46 216 1 22 0 0 0 chr11 110685246 110685268 -38098204 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr11 110685409 110685440 -38098032 + AT_rich Low_complexity Low_complexity 1 31 0 1782 165 0 20 chr11 110685441 110685738 -38097734 - AluJo SINE Alu -21 291 1 2178 114 0 3 chr11 110685752 110686041 -38097431 - AluSc SINE Alu -21 288 1 21 71 0 0 chr11 110686094 110686136 -38097336 + AT_rich Low_complexity Low_complexity 1 42 0 186 137 0 137 chr11 110686512 110686563 -38096909 - L3b LINE CR1 -8 1575 1532 23 68 0 0 chr11 110687804 110687848 -38095624 + AT_rich Low_complexity Low_complexity 1 44 0 216 171 171 0 chr11 110687949 110688019 -38095453 + L2 LINE L2 1817 1898 -1416 1603 203 7 10 chr11 110688117 110688417 -38095055 - AluJb SINE Alu -13 299 1 2267 99 7 3 chr11 110688471 110688774 -38094698 + AluSp SINE Alu 1 304 -9 21 82 0 0 chr11 110689110 110689159 -38094313 + AT_rich Low_complexity Low_complexity 1 49 0 2235 104 10 0 chr11 110689161 110689459 -38094013 + AluSg SINE Alu 1 301 -9 407 263 39 88 chr11 110689891 110690096 -38093376 + MER91A DNA MER1_type 2 196 0 212 250 149 54 chr11 110690157 110690305 -38093167 - MIR SINE MIR -10 252 91 230 149 43 0 chr11 110690497 110690544 -38092928 + A-rich Low_complexity Low_complexity 2 50 0 352 267 122 0 chr11 110691908 110692088 -38091384 + L1ME4a LINE L1 5705 5906 -215 378 0 0 0 chr11 110692109 110692151 -38091321 + (TG)n Simple_repeat Simple_repeat 2 43 0 2227 54 0 7 chr11 110692170 110692448 -38091024 + AluY SINE Alu 36 311 0 2338 115 0 0 chr11 110692873 110693185 -38090287 + AluSx SINE Alu 1 312 0 1087 171 0 0 chr11 110693185 110693360 -38090112 + AluSg/x SINE Alu 129 303 -7 302 155 103 0 chr11 110693386 110693444 -38090028 - MIR SINE MIR -16 246 183 588 264 0 39 chr11 110693497 110693679 -38089793 - MER5B DNA MER1_type -1 177 3 2055 111 31 7 chr11 110694716 110695005 -38088467 + AluSq SINE Alu 3 298 -15 1995 141 7 0 chr11 110695024 110695315 -38088157 + AluSx SINE Alu 1 293 -19 883 143 48 42 chr11 110695478 110695646 -38087826 - AluSg/x SINE Alu -23 287 119 2203 113 7 10 chr11 110696074 110696384 -38087088 + AluSp SINE Alu 1 309 -4 413 329 31 76 chr11 110696508 110696797 -38086675 + L2 LINE L2 2994 3269 -3 1835 133 4 11 chr11 110698678 110698949 -38084523 + AluJb SINE Alu 1 269 -43 282 236 0 0 chr11 110699083 110699138 -38084334 + 5S rRNA rRNA 1 55 -66 1427 191 67 12 chr11 110699172 110699576 -38083896 - L1M2 LINE L1 -4290 2559 2134 2268 89 0 3 chr11 110699605 110699898 -38083574 - AluSx SINE Alu -20 292 1 2747 117 126 97 chr11 110699969 110700491 -38082981 - MER39 LTR ERV1 -27 680 175 1751 153 0 10 chr11 110700491 110700779 -38082693 - AluJo SINE Alu -14 298 14 2747 117 126 97 chr11 110700779 110700857 -38082615 - MER39 LTR ERV1 -532 175 101 928 200 0 0 chr11 110700857 110701022 -38082450 + FRAM SINE Alu 1 165 -1 2747 117 126 97 chr11 110701022 110701079 -38082393 - MER39 LTR ERV1 -606 101 3 189 0 0 0 chr11 110701670 110701691 -38081781 + (T)n Simple_repeat Simple_repeat 1 21 0 201 132 0 0 chr11 110701833 110701871 -38081601 + (A)n Simple_repeat Simple_repeat 1 38 0 1981 143 3 3 chr11 110702016 110702310 -38081162 + AluJo SINE Alu 1 294 -18 2368 49 0 3 chr11 110702315 110702622 -38080850 + AluY SINE Alu 1 306 0 29 0 0 0 chr11 110702745 110702774 -38080698 + AT_rich Low_complexity Low_complexity 1 29 0 2292 92 7 3 chr11 110702964 110703270 -38080202 - AluSg SINE Alu -3 307 1 567 201 222 28 chr11 110703273 110703417 -38080055 + MER5A DNA MER1_type 2 173 -16 348 364 172 7 chr11 110704127 110704418 -38079054 - L2 LINE L2 0 3272 2934 333 0 0 0 chr11 110704854 110704891 -38078581 + (TG)n Simple_repeat Simple_repeat 2 38 0 2736 10 0 3 chr11 110704947 110705252 -38078220 + AluYa5 SINE Alu 1 304 -7 751 283 28 40 chr11 110705962 110706213 -38077259 + MIR SINE MIR 8 255 -7 297 0 0 0 chr11 110707966 110707999 -38075473 + (TG)n Simple_repeat Simple_repeat 2 34 0 1811 181 36 0 chr11 110709637 110709969 -38073503 + MER7A DNA MER2_type 4 345 -1 22 35 0 0 chr11 110711019 110711048 -38072424 + AT_rich Low_complexity Low_complexity 1 29 0 209 33 33 0 chr11 110711310 110711340 -38072132 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 1871 141 34 10 chr11 110711500 110711798 -38071674 + AluSx SINE Alu 1 305 -7 1986 123 11 3 chr11 110711807 110712091 -38071381 + AluSx SINE Alu 1 286 -26 1855 89 8 8 chr11 110712091 110712337 -38071135 + AluSc SINE Alu 44 291 -18 233 355 43 21 chr11 110712557 110712650 -38070822 - MIR SINE MIR -81 127 33 1515 176 39 20 chr11 110712818 110713124 -38070348 - AluJo SINE Alu 0 312 1 202 328 33 0 chr11 110713149 110713210 -38070262 - L3b LINE CR1 -10 1573 1511 296 252 206 46 chr11 110713691 110713822 -38069650 + MIR3 SINE MIR 34 185 -23 23 54 0 0 chr11 110714582 110714619 -38068853 + AT_rich Low_complexity Low_complexity 1 37 0 638 41 0 41 chr11 110714973 110715070 -38068402 - AluY SINE Alu 0 312 220 1478 70 5 0 chr11 110715070 110715255 -38068217 - AluY SINE Alu -125 186 1 277 226 65 0 chr11 110715640 110715702 -38067770 - L2 LINE L2 0 3272 3207 686 183 0 29 chr11 110716070 110716207 -38067265 - FLAM_A SINE Alu 0 133 1 2291 114 22 16 chr11 110716621 110716988 -38066484 + THE1C LTR MaLR 7 375 0 3176 153 21 90 chr11 110717096 110717893 -38065579 + L1MB7 LINE L1 5398 6139 -45 181 306 269 15 chr11 110720331 110720465 -38063007 - MIR SINE MIR -75 187 20 2084 139 0 3 chr11 110721595 110721896 -38061576 - AluSq SINE Alu -13 300 1 939 237 161 42 chr11 110722002 110722479 -38060993 + L1MC5 LINE L1 5404 5937 -1871 737 222 33 73 chr11 110722966 110723268 -38060204 + L1MC5 LINE L1 6670 6959 -1002 1820 101 0 76 chr11 110723317 110723634 -38059838 - AluY SINE Alu -18 293 1 1319 240 58 112 chr11 110723649 110724232 -38059240 + L1MC5 LINE L1 6963 7471 -490 661 233 44 11 chr11 110724232 110724412 -38059060 - MER5A DNA MER1_type 0 189 4 1319 240 58 112 chr11 110724412 110724829 -38058643 + L1MC5 LINE L1 7471 7909 -52 319 276 98 8 chr11 110724849 110725113 -38058359 + L1M4 LINE L1 2852 3139 -3007 474 211 114 32 chr11 110725273 110725396 -38058076 + FLAM_A SINE Alu 1 133 0 344 381 52 8 chr11 110725501 110725635 -38057837 - L2 LINE L2 -19 3253 3114 604 251 112 0 chr11 110725863 110726078 -38057394 - L1M4 LINE L1 -2398 3748 3510 23 0 0 0 chr11 110726303 110726326 -38057146 + AT_rich Low_complexity Low_complexity 1 23 0 317 309 69 49 chr11 110726760 110726964 -38056508 - L1MC4a LINE L1 -1910 5898 5691 1906 156 14 0 chr11 110727720 110728009 -38055463 + AluSx SINE Alu 1 293 -19 978 107 0 0 chr11 110728566 110728697 -38054775 + FLAM_C SINE Alu 1 131 -2 3568 130 82 10 chr11 110729016 110729617 -38053855 + LTR48B LTR ERV1 1 644 0 2439 73 0 10 chr11 110731897 110732211 -38051261 - AluY SINE Alu 0 311 1 2266 107 0 0 chr11 110732859 110733159 -38050313 - AluY SINE Alu -11 300 1 2225 108 13 0 chr11 110733730 110734037 -38049435 - AluSp SINE Alu -2 311 1 2131 110 7 7 chr11 110734359 110734659 -38048813 + AluSq SINE Alu 1 300 -13 1952 150 3 0 chr11 110734952 110735245 -38048227 + AluSx SINE Alu 1 294 -18 24 0 0 0 chr11 110735814 110735838 -38047634 + AT_rich Low_complexity Low_complexity 1 24 0 2084 114 3 14 chr11 110736638 110736935 -38046537 - AluSx SINE Alu -18 294 1 22 0 0 0 chr11 110737554 110737576 -38045896 + AT_rich Low_complexity Low_complexity 1 22 0 1086 239 125 22 chr11 110738546 110738854 -38044618 + L1ME1 LINE L1 5700 6063 -103 2176 89 3 36 chr11 110738854 110739157 -38044315 - AluSp SINE Alu -20 293 1 1086 239 125 22 chr11 110739157 110739263 -38044209 + L1ME1 LINE L1 6063 6157 -9 1185 131 42 73 chr11 110739428 110739687 -38043785 + MER2 DNA MER2_type 71 321 -24 1965 97 115 7 chr11 110740911 110741190 -38042282 - AluSx SINE Alu -3 309 1 710 120 94 17 chr11 110741243 110741360 -38042112 + FLAM_C SINE Alu 1 126 -7 202 342 66 57 chr11 110741717 110742018 -38041454 - L2 LINE L2 -2273 1041 738 266 282 109 56 chr11 110742132 110742398 -38041074 - L2 LINE L2 -2465 849 570 1011 196 99 48 chr11 110742486 110742598 -38040874 - Charlie4a DNA MER1_type -1549 412 307 1831 171 7 10 chr11 110742598 110742902 -38040570 + AluJb SINE Alu 1 303 -9 1011 196 99 48 chr11 110742902 110743181 -38040291 - Charlie4a DNA MER1_type -1654 307 1 2459 67 0 16 chr11 110744120 110744433 -38039039 + AluSc SINE Alu 1 308 -1 2203 113 7 10 chr11 110746359 110746669 -38036803 + AluSp SINE Alu 1 309 -4 413 329 31 76 chr11 110746793 110747082 -38036390 + L2 LINE L2 2994 3269 -3 1696 161 79 11 chr11 110748944 110749224 -38034248 + AluJb SINE Alu 1 299 -13 2287 135 0 0 chr11 110749509 110749821 -38033651 + AluSx SINE Alu 1 312 0 204 75 100 0 chr11 110751794 110751834 -38031638 + T-rich Low_complexity Low_complexity 2 45 0 180 0 0 0 chr11 110751852 110751872 -38031600 + (TTGG)n Simple_repeat Simple_repeat 2 21 0 1553 65 5 0 chr11 110754959 110755144 -38028328 + AluSp SINE Alu 1 186 -127 2056 145 0 10 chr11 110755300 110755603 -38027869 + AluSx SINE Alu 1 300 -12 1859 113 48 21 chr11 110757263 110757554 -38025918 - AluSx SINE Alu -8 304 6 2060 126 0 3 chr11 110757879 110758180 -38025292 + AluSx SINE Alu 1 300 -12 1906 132 51 40 chr11 110760015 110760386 -38023086 - THE1C LTR MaLR 0 375 1 629 200 17 8 chr11 110760430 110760550 -38022922 - L2 LINE L2 0 3313 3193 567 266 148 5 chr11 110760584 110760787 -38022685 - MIR SINE MIR -21 241 10 1756 150 3 58 chr11 110761195 110761508 -38021964 - AluJb SINE Alu -15 297 2 280 289 250 0 chr11 110761803 110761907 -38021565 - L2 LINE L2 -9 3263 3134 291 253 135 34 chr11 110762373 110762551 -38020921 - L2 LINE L2 -556 2758 2563 2235 96 0 0 chr11 110762873 110763190 -38020282 + AluSg SINE Alu 1 317 0 2108 113 17 3 chr11 110763610 110763910 -38019562 + AluJb SINE Alu 1 304 -8 2248 109 0 3 chr11 110764377 110764671 -38018801 + AluSx SINE Alu 1 293 -19 195 114 0 0 chr11 110764672 110764707 -38018765 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 * 203 149 0 43 chr11 110764704 110764751 -38018721 + (AGGGGG)n Simple_repeat Simple_repeat 2 46 0 * 700 127 40 7 chr11 110764745 110764895 -38018577 + GA-rich Low_complexity Low_complexity 1 155 0 258 303 0 0 chr11 110764910 110764976 -38018496 - MIR SINE MIR -77 131 66 2338 101 0 7 chr11 110765360 110765667 -38017805 + AluSx SINE Alu 1 305 -7 295 155 103 0 chr11 110765693 110765751 -38017721 - MIR SINE MIR -16 246 183 660 264 0 39 chr11 110765804 110765986 -38017486 - MER5B DNA MER1_type -1 177 3 1220 118 12 0 chr11 110766589 110766759 -38016713 - AluSq SINE Alu -11 302 131 2335 115 0 0 chr11 110766759 110767071 -38016401 - AluSx SINE Alu 0 312 1 1359 125 34 5 chr11 110767453 110767661 -38015811 - AluSq SINE Alu -99 214 1 1815 130 0 0 chr11 110768946 110769193 -38014279 - AluSq SINE Alu -65 248 2 2209 40 43 7 chr11 110769929 110770205 -38013267 - AluY SINE Alu -25 286 1 282 222 61 15 chr11 110770205 110770279 -38013193 - AluJo/FLAM SINE Alu -169 133 66 197 289 261 21 chr11 110770390 110770532 -38012940 + L2 LINE L2 3094 3269 -3 277 262 120 32 chr11 110772011 110772214 -38011258 - LTR16A LTR ERVL -8 442 175 369 308 34 0 chr11 110772265 110772382 -38011090 - LTR16A LTR ERVL -329 121 1 230 296 165 0 chr11 110772402 110772517 -38010955 - MIR SINE MIR -8 254 121 1660 184 17 42 chr11 110772811 110773182 -38010290 - MLT1A1 LTR MaLR 0 365 1 199 260 104 13 chr11 110773182 110773259 -38010213 + L2 LINE L2 2755 2838 -476 1056 147 20 40 chr11 110773268 110773466 -38010006 + MER20 DNA MER1_type 24 217 -2 494 249 203 52 chr11 110774060 110774445 -38009027 + L2 LINE L2 2827 3269 -44 407 19 19 0 chr11 110774644 110774696 -38008776 + (TTTAA)n Simple_repeat Simple_repeat 3 55 0 2209 90 11 0 chr11 110774696 110774975 -38008497 - AluSx SINE Alu -30 282 1 343 68 0 0 chr11 110775642 110775686 -38007786 + Alu SINE Alu 1 44 -256 2105 100 21 0 chr11 110775686 110775975 -38007497 + AluSx SINE Alu 5 299 -13 2314 46 29 7 chr11 110776280 110776560 -38006912 - L1PA8 LINE L1 -1 6171 5886 234 255 41 41 chr11 110777028 110777126 -38006346 + L1MD2 LINE L1 5774 5871 -1937 1506 193 11 4 chr11 110777145 110777425 -38006047 - AluJo SINE Alu -30 282 1 589 301 11 16 chr11 110778413 110778599 -38004873 + MIR SINE MIR 77 261 -1 2166 92 26 0 chr11 110778749 110779054 -38004418 + AluSq SINE Alu 1 313 0 22 0 0 0 chr11 110779108 110779130 -38004342 + AT_rich Low_complexity Low_complexity 1 22 0 18675 52 11 0 chr11 110779131 110782201 -38001271 - L1PA6 LINE L1 -55 6099 2996 241 287 78 17 chr11 110782351 110782466 -38001006 - L1MA9 LINE L1 -98 6214 6093 30 0 0 0 chr11 110782473 110782503 -38000969 + AT_rich Low_complexity Low_complexity 1 30 0 2224 83 0 10 chr11 110782503 110782791 -38000681 - AluSx SINE Alu -27 285 1 4097 185 19 43 chr11 110782791 110784156 -37999316 - L1MA9 LINE L1 -209 6103 4777 1877 171 0 19 chr11 110784156 110784465 -37999007 - AluJb SINE Alu -8 304 2 4097 185 19 43 chr11 110784465 110784695 -37998777 - L1MA9 LINE L1 -1535 4777 4543 2660 26 7 3 chr11 110785485 110785795 -37997677 + AluY SINE Alu 1 311 0 924 49 0 25 chr11 110785835 110785957 -37997515 - AluSp SINE Alu -194 119 1 3488 165 19 12 chr11 110786442 110787037 -37996435 + L1PA15 LINE L1 5561 6159 -6 2627 157 73 5 chr11 110787037 110787473 -37995999 + L1PB4 LINE L1 5675 6143 -13 21 0 0 0 chr11 110787473 110787494 -37995978 + AT_rich Low_complexity Low_complexity 1 21 0 958 238 60 8 chr11 110787494 110787729 -37995743 + L1MD2 LINE L1 5897 6143 -216 736 177 41 7 chr11 110787735 110787882 -37995590 + L1MD2 LINE L1 6207 6358 -1 906 162 0 0 chr11 110788044 110788223 -37995249 + (CATATA)n Simple_repeat Simple_repeat 1 179 0 255 261 0 43 chr11 110788241 110788333 -37995139 + L1MC4 LINE L1 6614 6701 -1341 245 233 0 12 chr11 110788337 110788423 -37995049 + (CATATA)n Simple_repeat Simple_repeat 2 86 0 234 260 62 42 chr11 110788501 110788597 -37994875 + MER94 DNA DNA 33 130 -4 233 246 62 0 chr11 110788814 110788879 -37994593 - Charlie8 DNA MER1_type -989 1428 1360 339 291 55 0 chr11 110789024 110789134 -37994338 - L3 LINE CR1 -146 1431 1316 412 317 85 0 chr11 110789274 110789438 -37994034 + MIR SINE MIR 41 218 -44 352 357 35 14 chr11 110789974 110790117 -37993355 + L2 LINE L2 3163 3308 -5 868 197 64 36 chr11 110791246 110791495 -37991977 + MIR SINE MIR 7 262 0 463 345 30 20 chr11 110791490 110791545 -37991927 - MIR SINE MIR -15 247 194 * 4414 140 35 55 chr11 110791545 110792346 -37991126 - LTR1 LTR ERV1 0 785 1 463 345 30 20 chr11 110792346 110792487 -37990985 - MIR SINE MIR -68 194 49 28 0 0 0 chr11 110792553 110792581 -37990891 + AT_rich Low_complexity Low_complexity 1 28 0 2738 186 43 41 chr11 110793751 110794311 -37989161 + MER68 LTR ERV1 2 562 0 299 277 134 9 chr11 110794688 110794800 -37988672 - L3 LINE CR1 -7 1570 1445 1468 184 13 36 chr11 110795014 110795323 -37988149 + AluJo SINE Alu 1 302 -10 2527 68 0 0 chr11 110795329 110795638 -37987834 + AluY SINE Alu 1 309 -2 21 36 0 0 chr11 110795792 110795820 -37987652 + AT_rich Low_complexity Low_complexity 1 28 0 197 178 22 0 chr11 110796412 110796457 -37987015 + GA-rich Low_complexity Low_complexity 3 48 0 682 249 40 0 chr11 110796774 110796951 -37986521 - MIR SINE MIR -1 261 78 21 0 0 0 chr11 110797494 110797515 -37985957 + AT_rich Low_complexity Low_complexity 1 21 0 1057 251 30 24 chr11 110798201 110798339 -37985133 + LTR16A LTR ERVL 114 250 -200 1974 142 96 9 chr11 110798339 110798684 -37984788 + THE1C LTR MaLR 1 375 0 1057 251 30 24 chr11 110798684 110798880 -37984592 + LTR16A LTR ERVL 250 450 0 363 341 119 19 chr11 110799216 110799683 -37983789 - L2 LINE L2 -237 3035 2508 44 56 0 0 chr11 110799720 110799792 -37983680 + AT_rich Low_complexity Low_complexity 1 72 0 958 241 23 5 chr11 110799922 110800167 -37983305 + L1MC4a LINE L1 6649 6866 -942 472 195 160 0 chr11 110800172 110800341 -37983131 - Charlie1 DNA MER1_type -75 2686 2491 1913 238 62 89 chr11 110800985 110801506 -37981966 + L1MC4a LINE L1 6916 7450 -358 2155 98 31 0 chr11 110801506 110801792 -37981680 - AluSx SINE Alu -17 295 1 1913 238 62 89 chr11 110801792 110801996 -37981476 + L1MC4a LINE L1 7450 7658 -150 1786 208 96 8 chr11 110801996 110802476 -37980996 - Charlie1b DNA MER1_type 0 523 2 1913 238 62 89 chr11 110802476 110802619 -37980853 + L1MC4a LINE L1 7658 7761 -47 2237 101 10 0 chr11 110802619 110802916 -37980556 - AluSc SINE Alu -6 303 4 1913 238 62 89 chr11 110802916 110802963 -37980509 + L1MC4a LINE L1 7761 7808 0 310 276 142 66 chr11 110803328 110803709 -37979763 - MLT1K LTR MaLR -24 564 155 362 310 184 0 chr11 110804021 110804195 -37979277 + MIR SINE MIR 46 251 -11 418 263 58 15 chr11 110804742 110804879 -37978593 + MIR SINE MIR 120 262 0 386 261 198 25 chr11 110805355 110805638 -37977834 - HAL1 LINE L1 -115 2392 2061 1118 70 7 0 chr11 110805645 110805787 -37977685 - AluSp/q SINE Alu -2 311 169 782 250 247 6 chr11 110806018 110806237 -37977235 - HAL1 LINE L1 -620 1887 1722 234 0 0 0 chr11 110806237 110806263 -37977209 + (ATTG)n Simple_repeat Simple_repeat 2 27 0 782 250 247 6 chr11 110806263 110806395 -37977077 - HAL1 LINE L1 -785 1722 1451 751 253 56 15 chr11 110806399 110806668 -37976804 - HAL1 LINE L1 -1115 1392 1113 922 271 107 62 chr11 110806695 110807227 -37976245 - LTR67 LTR ERVL 0 557 2 342 67 0 0 chr11 110807591 110807636 -37975836 + MADE1 DNA Mariner 35 79 -1 1507 244 75 53 chr11 110807696 110808188 -37975284 + MLT1D LTR MaLR 1 503 -2 221 206 79 16 chr11 110809045 110809108 -37974364 + MER91B DNA MER1_type 29 95 -95 970 136 7 0 chr11 110809899 110810039 -37973433 - AluSc SINE Alu -168 141 1 269 211 0 35 chr11 110810892 110810949 -37972523 - MER97b DNA MER1_type? -876 177 123 5873 165 39 22 chr11 110811342 110813127 -37970345 + L1PA15 LINE L1 4124 5933 -232 7411 48 6 5 chr11 110813129 110814625 -37968847 + L1PA4 LINE L1 4631 6142 -13 4428 57 8 7 chr11 110814014 110814625 -37968847 + L1PA4 LINE L1 5531 6180 0 223 105 0 0 chr11 110814625 110814663 -37968809 + (TAAA)n Simple_repeat Simple_repeat 3 72 0 222 330 170 0 chr11 110815360 110815466 -37968006 + L2 LINE L2 3148 3271 -1 213 121 0 0 chr11 110815518 110815551 -37967921 + (TA)n Simple_repeat Simple_repeat 1 33 0 182 404 43 37 chr11 110815658 110815819 -37967653 - L3b LINE CR1 -111 1472 1311 269 313 154 33 chr11 110816609 110816823 -37966649 + MIR SINE MIR 17 256 -6 593 224 118 7 chr11 110816949 110817101 -37966371 - L2 LINE L2 0 3313 3145 1904 117 84 36 chr11 110818155 110818513 -37964959 - THE1C LTR MaLR 0 375 1 2259 78 0 10 chr11 110818628 110818924 -37964548 - AluY SINE Alu -18 293 1 253 307 55 79 chr11 110819547 110819749 -37963723 - L2 LINE L2 -1 3312 3116 2267 101 3 20 chr11 110820760 110821091 -37962381 + AluSq SINE Alu 1 313 0 412 316 76 0 chr11 110821377 110821548 -37961924 + MIR SINE MIR 8 191 -71 220 291 18 0 chr11 110822118 110822173 -37961299 + MIR3 SINE MIR 106 161 -47 2086 132 0 20 chr11 110822871 110823167 -37960305 - AluSx SINE Alu -22 290 1 290 335 25 63 chr11 110823211 110823510 -37959962 + L1ME LINE L1 5624 5915 -249 278 174 29 0 chr11 110823799 110823868 -37959604 + (GAATG)n Simple_repeat Simple_repeat 2 72 0 23 33 0 0 chr11 110824703 110824733 -37958739 + AT_rich Low_complexity Low_complexity 1 30 0 729 167 0 0 chr11 110824942 110825056 -37958416 - FLAM_C SINE Alu -27 116 3 1750 202 53 21 chr11 110825797 110826233 -37957239 + MLT1C LTR MaLR 6 455 -12 196 242 0 106 chr11 110827127 110827193 -37956279 - L2 LINE L2 0 3272 3214 1683 169 26 0 chr11 110827649 110827952 -37955520 - AluJo SINE Alu 0 315 6 692 323 41 21 chr11 110827992 110828330 -37955142 - LTR16C LTR ERVL 0 491 147 227 276 0 40 chr11 110828579 110828655 -37954817 + HAL1 LINE L1 643 715 -1792 872 247 89 35 chr11 110828782 110829151 -37954321 + MLT1J LTR MaLR 123 511 0 346 318 13 20 chr11 110829182 110829333 -37954139 + HAL1 LINE L1 747 896 -1611 1581 174 4 33 chr11 110829433 110829709 -37953763 + AluJo SINE Alu 1 268 -44 28 71 0 0 chr11 110829723 110829779 -37953693 + AT_rich Low_complexity Low_complexity 1 56 0 268 113 14 70 chr11 110829795 110829866 -37953606 + (TTTA)n Simple_repeat Simple_repeat 1 67 0 310 232 84 21 chr11 110829935 110830030 -37953442 + HAL1 LINE L1 1034 1134 -1373 1806 267 131 37 chr11 110830047 110830859 -37952613 + HAL1 LINE L1 1197 2152 -355 2326 111 0 0 chr11 110830859 110831166 -37952306 + AluSx SINE Alu 1 307 -5 1806 267 131 37 chr11 110831166 110831516 -37951956 + HAL1 LINE L1 2152 2468 -39 280 318 0 0 chr11 110833127 110833215 -37950257 + CT-rich Low_complexity Low_complexity 3 90 0 362 300 106 24 chr11 110833623 110833793 -37949679 - MIR SINE MIR 0 262 79 2264 98 0 3 chr11 110834270 110834565 -37948907 + AluSx SINE Alu 1 294 -18 189 282 87 6 chr11 110834706 110834821 -37948651 + MIR SINE MIR 84 212 -50 261 346 75 41 chr11 110835551 110835817 -37947655 - L2 LINE L2 0 3272 2998 284 293 58 65 chr11 110837404 110837657 -37945815 + MIR3 SINE MIR 4 252 -10 209 304 59 20 chr11 110837796 110837898 -37945574 + L2 LINE L2 3203 3308 -5 249 365 48 8 chr11 110837899 110838025 -37945447 - L2 LINE L2 -6 3266 3136 208 405 0 0 chr11 110838245 110838334 -37945138 - L2 LINE L2 -453 2861 2773 213 65 0 0 chr11 110838593 110838624 -37944848 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1812 167 0 3 chr11 110838624 110838912 -37944560 - AluSx SINE Alu -25 287 1 246 331 97 58 chr11 110839221 110839569 -37943903 - L2 LINE L2 -197 3075 2715 2720 130 53 35 chr11 110839708 110840199 -37943273 + Tigger3b DNA MER2_type 2 501 -730 459 128 64 0 chr11 110840199 110840293 -37943179 + Tigger3b DNA MER2_type 616 715 -516 227 231 0 0 chr11 110840293 110840332 -37943140 + AluJ/monomer SINE Alu 1 39 -261 301 309 24 24 chr11 110840332 110840458 -37943014 - L1ME LINE L1 -285 5836 5711 26 93 0 0 chr11 110840538 110840613 -37942859 + AT_rich Low_complexity Low_complexity 1 75 0 1763 173 6 31 chr11 110840613 110840966 -37942506 - MER2 DNA MER2_type 0 344 1 253 235 69 29 chr11 110841567 110841669 -37941803 - L1ME4a LINE L1 -32 6089 5984 332 308 39 10 chr11 110842493 110842597 -37940875 - L2 LINE L2 -64 3208 3102 307 310 89 25 chr11 110842802 110843005 -37940467 + MER115 DNA AcHobo 120 335 -358 238 294 0 0 chr11 110843407 110843475 -37939997 - MER63 DNA MER1_type 0 1062 995 426 172 86 0 chr11 110843475 110843568 -37939904 - MER63 DNA MER1_type -38 1022 922 238 80 40 0 chr11 110843569 110843619 -37939853 + (TTAAA)n Simple_repeat Simple_repeat 5 56 0 243 194 33 50 chr11 110843622 110843802 -37939670 + (TTATA)n Simple_repeat Simple_repeat 3 179 0 646 203 159 12 chr11 110843802 110844053 -37939419 - MER63 DNA MER1_type -76 984 697 560 233 73 53 chr11 110844926 110845132 -37938340 - MER63A DNA MER1_type 0 210 1 186 318 36 45 chr11 110845388 110845498 -37937974 + L3 LINE CR1 1459 1567 -10 564 152 91 30 chr11 110846344 110846509 -37936963 + MER53 DNA DNA 2 176 -13 435 87 29 0 chr11 110846601 110846670 -37936802 - L1MA6 LINE L1 -6 6294 6224 2014 147 0 7 chr11 110847209 110847516 -37935956 - AluJb SINE Alu -7 305 1 184 263 197 73 chr11 110848374 110848511 -37934961 - MER5A DNA MER1_type 0 189 36 728 256 35 10 chr11 110849903 110850192 -37933280 + L1ME1 LINE L1 4906 5201 -945 760 202 0 0 chr11 110850194 110850323 -37933149 + FLAM_C SINE Alu 1 129 -14 21 0 0 0 chr11 110850323 110850344 -37933128 + AT_rich Low_complexity Low_complexity 1 21 0 2068 112 4 0 chr11 110850344 110850675 -37932797 + AluSc SINE Alu 3 334 0 2266 100 0 13 chr11 110850683 110850984 -37932488 + AluSg SINE Alu 1 297 -13 509 176 40 16 chr11 110850985 110851110 -37932362 + L1ME1 LINE L1 5186 5313 -833 808 211 12 0 chr11 110851225 110851391 -37932081 - L1ME1 LINE L1 -90 6076 5909 1687 168 10 10 chr11 110851530 110851839 -37931633 - AluJo SINE Alu -3 309 1 2194 124 0 0 chr11 110851888 110852186 -37931286 - AluSx SINE Alu -14 298 1 1970 148 14 0 chr11 110852189 110852479 -37930993 - AluSx SINE Alu -18 294 1 372 212 42 51 chr11 110852510 110852540 -37930932 + L1ME1 LINE L1 5362 5391 -773 2387 87 0 3 chr11 110852540 110852838 -37930634 - AluSc SINE Alu -11 298 2 372 212 42 51 chr11 110852838 110852925 -37930547 + L1ME1 LINE L1 5391 5478 -686 21 36 0 0 chr11 110853027 110853055 -37930417 + AT_rich Low_complexity Low_complexity 1 28 0 1740 130 0 4 chr11 110853076 110853323 -37930149 + AluSx SINE Alu 1 246 -66 2655 136 2 14 chr11 110853328 110853761 -37929711 - MER61E LTR ERV1 -133 436 9 2228 221 50 1 chr11 110853764 110854330 -37929142 + L1ME1 LINE L1 5573 6177 -1 400 313 107 43 chr11 110855062 110855295 -37928177 + MIR SINE MIR 15 262 0 716 147 0 0 chr11 110855983 110856092 -37927380 - MER72 LTR ERV1 -28 694 586 1925 158 30 16 chr11 110856337 110856705 -37926767 + THE1C LTR MaLR 3 375 0 220 305 0 17 chr11 110857171 110857230 -37926242 - L2 LINE L2 -2 3270 3213 686 237 50 15 chr11 110857232 110857430 -37926042 - L2 LINE L2 0 3313 3109 1333 280 202 4 chr11 110857763 110858278 -37925194 - L2 LINE L2 -567 2747 2131 1719 115 126 7 chr11 110858553 110858822 -37924650 + AluSx SINE Alu 1 301 -11 276 284 123 37 chr11 110859396 110859558 -37923914 - MIR SINE MIR -3 259 84 1905 123 3 59 chr11 110860153 110860477 -37922995 + AluSx SINE Alu 1 306 -6 2443 110 60 38 chr11 110861498 110861917 -37921555 + MSTA LTR MaLR 1 428 0 484 237 39 70 chr11 110862143 110862299 -37921173 - MER5A DNA MER1_type 0 189 39 658 189 209 0 chr11 110862341 110862494 -37920978 - MER5A DNA MER1_type -3 186 2 1776 92 0 4 chr11 110863024 110863253 -37920219 - AluSg/x SINE Alu -7 305 78 384 273 189 8 chr11 110863965 110864097 -37919375 - MER5A DNA MER1_type -1 188 33 1174 137 5 0 chr11 110864385 110864582 -37918890 + L1PBa LINE L1 3 200 -6663 11771 108 115 5 chr11 110864584 110866676 -37916796 + L1PBa LINE L1 636 2958 -3905 4194 227 17 13 chr11 110866673 110867835 -37915637 + L1PA13 LINE L1 1336 2512 -4285 * 1670 193 10 3 chr11 110867835 110868136 -37915336 + AluJb SINE Alu 1 303 -9 4194 227 17 13 chr11 110868136 110868441 -37915031 + L1PA13 LINE L1 2512 2814 -3983 383 172 103 4 chr11 110868454 110868576 -37914896 + L1PA13 LINE L1 2771 2905 -3892 8800 212 48 51 chr11 110868691 110871456 -37912016 + L1P4 LINE L1 1855 4610 -1536 1162 129 29 7 chr11 110871464 110871804 -37911668 + L1P4 LINE L1 5121 5466 -699 220 359 13 31 chr11 110872309 110872468 -37911004 + L2 LINE L2 2607 2762 -552 2301 91 10 0 chr11 110873377 110873674 -37909798 - AluSx SINE Alu -12 300 1 685 215 32 86 chr11 110873849 110873911 -37909561 - MER5A DNA MER1_type -1 188 124 1682 164 0 34 chr11 110873911 110874209 -37909263 + AluJo SINE Alu 1 288 -24 685 215 32 86 chr11 110874209 110874332 -37909140 - MER5A DNA MER1_type -65 124 13 23 0 0 0 chr11 110876059 110876082 -37907390 + AT_rich Low_complexity Low_complexity 1 23 0 656 157 0 0 chr11 110877135 110877237 -37906235 + LTR47A LTR ERVL 259 360 -92 1651 182 4 4 chr11 110877237 110877506 -37905966 + AluJb SINE Alu 1 269 -43 282 236 0 0 chr11 110877640 110877695 -37905777 + 5S rRNA rRNA 1 55 -66 2381 84 0 3 chr11 110877762 110878060 -37905412 + AluSq SINE Alu 1 297 -16 492 234 39 7 chr11 110878384 110878538 -37904934 - MER103 DNA DNA -7 159 1 721 186 29 21 chr11 110878656 110878965 -37904507 + MLT1A1 LTR MaLR 17 374 0 324 308 75 9 chr11 110880548 110880655 -37902817 + L2 LINE L2 3159 3272 0 2126 128 3 3 chr11 110881087 110881385 -37902087 - AluSx SINE Alu -14 298 1 2803 121 31 9 chr11 110881693 110882140 -37901332 + MSTB2 LTR MaLR 1 457 0 2000 135 0 0 chr11 110882377 110882659 -37900813 - AluSx SINE Alu -30 282 1 2010 105 11 7 chr11 110882688 110882974 -37900498 - AluSx SINE Alu -25 287 1 2461 62 3 16 chr11 110883119 110883427 -37900045 - AluY SINE Alu -7 304 1 2384 67 20 0 chr11 110884669 110884966 -37898506 + AluY SINE Alu 1 303 -8 2332 148 48 35 chr11 110885522 110885983 -37897489 + MLT1C LTR MaLR 1 467 0 409 243 142 30 chr11 110886537 110886706 -37896766 + MIR SINE MIR 62 249 -13 33 0 0 0 chr11 110887089 110887122 -37896350 + AT_rich Low_complexity Low_complexity 1 33 0 2003 98 34 27 chr11 110887661 110887956 -37895516 + AluSx SINE Alu 1 297 -15 209 293 120 15 chr11 110888792 110888925 -37894547 - L2 LINE L2 -24 3289 3143 25 0 0 0 chr11 110888999 110889024 -37894448 + AT_rich Low_complexity Low_complexity 1 25 0 1970 202 135 80 chr11 110889048 110889794 -37893678 + MER21B LTR ERV1 17 803 -60 2149 100 14 7 chr11 110890224 110890514 -37892958 + AluSx SINE Alu 1 292 -20 255 228 116 83 chr11 110890514 110890790 -37892682 + L1M4 LINE L1 2152 2436 -3710 239 242 164 12 chr11 110891010 110891175 -37892297 + L1M4 LINE L1 2843 3032 -3114 13918 199 37 22 chr11 110891484 110893971 -37889501 + L1PA15 LINE L1 1289 3738 -3078 2022 143 0 3 chr11 110893971 110894289 -37889183 - AluSx SINE Alu 0 317 1 13918 199 37 22 chr11 110894289 110897252 -37886220 + L1PA15 LINE L1 3738 6814 -2 563 208 8 15 chr11 110898189 110898319 -37885153 + LTR33 LTR ERVL 16 144 -377 946 257 60 0 chr11 110898509 110898727 -37884745 - MIR SINE MIR -21 241 11 1866 133 63 0 chr11 110898859 110899144 -37884328 + AluSx SINE Alu 3 305 -7 352 307 52 69 chr11 110899852 110900083 -37883389 - MIR SINE MIR -16 246 20 2114 129 3 3 chr11 110900266 110900568 -37882904 + AluSx SINE Alu 1 302 -10 337 227 100 9 chr11 110900773 110900883 -37882589 - L1ME3A LINE L1 -238 5932 5813 251 264 154 55 chr11 110901079 110901286 -37882186 + L1MC4a LINE L1 5605 5767 -403 1598 208 199 19 chr11 110901286 110901763 -37881709 + MLT1F1 LTR MaLR 1 563 -4 251 264 154 55 chr11 110901763 110901847 -37881625 + L1MC4a LINE L1 5767 5841 -329 25 75 0 0 chr11 110902001 110902054 -37881418 + AT_rich Low_complexity Low_complexity 1 53 0 2012 137 0 10 chr11 110902478 110902778 -37880694 + AluSx SINE Alu 1 297 -15 326 279 77 49 chr11 110903216 110903399 -37880073 + MIR SINE MIR 63 250 -12 1795 166 40 3 chr11 110903645 110903946 -37879526 - AluJb SINE Alu 0 312 1 301 276 108 42 chr11 110903973 110904187 -37879285 + L2 LINE L2 3079 3306 -7 462 146 58 48 chr11 110904351 110904454 -37879018 - MIR SINE MIR 0 262 159 284 77 0 39 chr11 110904527 110904579 -37878893 - Alu SINE Alu -5 297 248 248 273 23 34 chr11 110905262 110905350 -37878122 - MIR SINE MIR -104 158 72 297 211 0 0 chr11 110907735 110907792 -37875680 + MER58 DNA MER1_type 197 253 -88 1652 141 22 38 chr11 110907885 110908205 -37875267 - MER1B DNA MER1_type -24 315 1 605 270 17 102 chr11 110908678 110909022 -37874450 - L2 LINE L2 -60 3253 2939 26 30 0 0 chr11 110909473 110909506 -37873966 + AT_rich Low_complexity Low_complexity 1 33 0 311 278 158 8 chr11 110909638 110909879 -37873593 - L1ME4a LINE L1 -234 5887 5611 352 255 92 20 chr11 110909964 110910062 -37873410 - MIR SINE MIR -65 143 39 2497 117 193 52 chr11 110910097 110910635 -37872837 + LTR18B LTR ERVL 1 614 0 235 360 35 0 chr11 110911245 110911359 -37872113 - L2 LINE L2 -14 3258 3141 431 116 74 25 chr11 110911802 110911923 -37871549 - MER96B DNA MER1_type? -224 193 67 492 309 29 34 chr11 110912625 110913004 -37870468 - L1ME4a LINE L1 -26 6095 5719 26 93 0 0 chr11 110913095 110913170 -37870302 + AT_rich Low_complexity Low_complexity 1 75 0 1787 170 6 31 chr11 110913170 110913523 -37869949 - MER2 DNA MER2_type 0 344 1 253 235 69 29 chr11 110914124 110914226 -37869246 - L1ME4a LINE L1 -32 6089 5984 332 308 39 10 chr11 110915051 110915155 -37868317 - L2 LINE L2 -64 3208 3102 307 310 89 25 chr11 110915360 110915563 -37867909 + MER115 DNA AcHobo 120 335 -358 263 279 0 0 chr11 110915965 110916033 -37867439 - MER63B DNA MER1_type 0 436 369 426 172 86 0 chr11 110916033 110916126 -37867346 - MER63B DNA MER1_type -38 396 296 238 80 40 0 chr11 110916127 110916177 -37867295 + (TTAAA)n Simple_repeat Simple_repeat 5 56 0 292 206 22 39 chr11 110916180 110916360 -37867112 + (TTATA)n Simple_repeat Simple_repeat 3 179 0 940 203 126 19 chr11 110916360 110916685 -37866787 - MER63B DNA MER1_type -76 360 1 267 296 36 24 chr11 110917209 110917403 -37866069 + MIR SINE MIR 3 262 0 183 313 0 0 chr11 110917847 110917895 -37865577 - MER5A DNA MER1_type -22 167 120 224 306 0 16 chr11 110917897 110917959 -37865513 + MER5A DNA MER1_type 129 189 0 389 246 51 51 chr11 110917997 110918115 -37865357 - L2 LINE L2 0 3272 3155 2366 99 0 0 chr11 110918409 110918722 -37864750 + AluSq SINE Alu 1 313 0 2118 117 3 0 chr11 110918950 110919265 -37864207 - AluSx SINE Alu 0 316 1 21 0 0 0 chr11 110920671 110920692 -37862780 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr11 110921061 110921085 -37862387 + GC_rich Low_complexity Low_complexity 1 24 0 255 304 88 0 chr11 110922971 110923073 -37860399 - MIR SINE MIR -80 182 72 896 235 63 17 chr11 110924435 110924673 -37858799 - MIR SINE MIR 0 262 14 317 360 98 13 chr11 110925088 110925313 -37858159 - MIR SINE MIR -6 256 13 * 331 171 171 13 chr11 110925289 110925365 -37858107 + L2 LINE L2 3179 3266 -6 240 259 0 0 chr11 110925377 110925458 -37858014 + (TGGA)n Simple_repeat Simple_repeat 1 81 0 1090 211 34 104 chr11 110926090 110926474 -37856998 - MLT1A2 LTR MaLR 0 374 18 181 179 128 0 chr11 110926906 110926945 -37856527 + MIR SINE MIR 219 262 0 252 250 280 0 chr11 110927719 110927819 -37855653 + MIR SINE MIR 25 152 -56 588 262 158 0 chr11 110927855 110928038 -37855434 - MIR SINE MIR -42 220 9 2600 41 0 22 chr11 110929181 110929497 -37853975 + AluY SINE Alu 1 309 -2 183 343 62 48 chr11 110929784 110929930 -37853542 - L2 LINE L2 -1038 2276 2129 304 314 0 0 chr11 110929992 110930078 -37853394 - MIR SINE MIR 0 262 177 201 267 87 77 chr11 110930187 110930334 -37853138 - L2 LINE L2 -1328 1986 1842 2015 120 13 19 chr11 110930334 110930643 -37852829 + AluSx SINE Alu 1 307 -5 201 267 87 77 chr11 110930643 110930795 -37852677 - L2 LINE L2 -1472 1842 1684 381 311 45 8 chr11 110931568 110931700 -37851772 - MIR SINE MIR -50 212 76 2223 111 3 22 chr11 110931801 110932116 -37851356 + AluSx SINE Alu 1 309 -3 196 311 40 0 chr11 110932342 110932416 -37851056 - L2 LINE L2 -10 3262 3186 243 363 11 0 chr11 110932597 110932688 -37850784 - L2 LINE L2 -1 3312 3221 2311 98 3 3 chr11 110933052 110933357 -37850115 + AluSp SINE Alu 1 305 -8 971 237 14 0 chr11 110933449 110933664 -37849808 - MER20 DNA MER1_type 0 219 2 200 239 141 11 chr11 110934396 110934488 -37848984 + MIR SINE MIR 37 140 -122 248 264 38 57 chr11 110934634 110934740 -37848732 - MIR SINE MIR -53 209 106 416 278 63 8 chr11 110935009 110935135 -37848337 + L2 LINE L2 3181 3313 0 1959 135 0 64 chr11 110935897 110936223 -37847249 + AluSx SINE Alu 5 309 -3 355 300 44 22 chr11 110936896 110937077 -37846395 + MIR SINE MIR 16 197 -64 515 305 40 66 chr11 110940048 110940320 -37843152 - MLT1J LTR MaLR -19 492 228 180 286 41 0 chr11 110941344 110941393 -37842079 - L2 LINE L2 -7 3265 3215 431 278 191 5 chr11 110941422 110941631 -37841841 + MIR SINE MIR 15 262 0 375 376 51 31 chr11 110941748 110942188 -37841284 - L2 LINE L2 -189 3083 2630 794 246 36 1 chr11 110942188 110942460 -37841012 + L1M4 LINE L1 1554 1989 -4574 11698 219 24 27 chr11 110942633 110944284 -37839188 + L1M4 LINE L1 1900 3554 -2856 2376 71 0 14 chr11 110944284 110944581 -37838891 - AluY SINE Alu -18 293 1 11698 219 24 27 chr11 110944581 110946956 -37836516 + L1M4 LINE L1 3554 5862 -548 1016 160 55 0 chr11 110947056 110947237 -37836235 - MER7A DNA MER2_type -157 189 1 463 322 37 21 chr11 110947413 110947655 -37835817 - L2 LINE L2 -895 2419 2174 22 0 0 0 chr11 110948496 110948518 -37834954 + AT_rich Low_complexity Low_complexity 1 22 0 427 314 54 59 chr11 110948731 110948970 -37834502 - MIR SINE MIR -13 249 12 356 59 20 0 chr11 110949375 110949426 -37834046 + (TG)n Simple_repeat Simple_repeat 2 53 0 257 262 66 74 chr11 110949454 110949576 -37833896 - MIR SINE MIR -122 140 20 1987 145 13 10 chr11 110950962 110951273 -37832199 + AluJb SINE Alu 1 312 0 237 70 53 18 chr11 110951752 110951809 -37831663 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 1639 96 0 0 chr11 110951812 110952032 -37831440 - AluSc SINE Alu -1 308 89 1896 169 24 0 chr11 110952139 110952429 -37831043 + AluJb SINE Alu 1 297 -15 234 321 60 104 chr11 110952579 110952962 -37830510 - L2 LINE L2 -46 3226 2861 3218 170 18 5 chr11 110954654 110955261 -37828211 + L1MB7 LINE L1 5570 6184 0 599 302 47 30 chr11 110955466 110955698 -37827774 + MIR SINE MIR 21 256 -6 1839 152 10 7 chr11 110955942 110956232 -37827240 + AluJb SINE Alu 1 291 -21 1654 283 124 30 chr11 110957990 110958969 -37824503 - L2 LINE L2 -4 3309 2228 226 291 0 0 chr11 110959562 110959641 -37823831 - L1M4 LINE L1 -3323 2823 2745 474 76 0 0 chr11 110960036 110960102 -37823370 + THE1B LTR MaLR 259 324 -40 198 322 200 9 chr11 110960208 110960323 -37823149 - L2 LINE L2 0 3272 3136 1777 149 39 39 chr11 110960544 110960906 -37822566 + THE1C LTR MaLR 14 375 0 9525 117 65 12 chr11 110960906 110962406 -37821066 + THE1C-int LTR MaLR 1 1580 0 1864 106 68 57 chr11 110962406 110962773 -37820699 + THE1C LTR MaLR 1 371 -4 286 243 9 45 chr11 110963171 110963282 -37820190 - MER31-int LTR ERV1 -3801 1135 1029 703 214 51 37 chr11 110963679 110963951 -37819521 - MER39 LTR ERV1 0 684 430 1827 177 76 79 chr11 110963956 110964498 -37818974 - LTR8A LTR ERV1 0 727 188 2159 114 3 0 chr11 110964576 110964873 -37818599 + AluSx SINE Alu 1 298 -14 1210 120 11 0 chr11 110964873 110965048 -37818424 + AluSq SINE Alu 134 310 -3 722 153 48 0 chr11 110965048 110965172 -37818300 - LTR8 LTR ERV1 -561 130 1 530 209 58 139 chr11 110965174 110965432 -37818040 - MER34 LTR ERV1 -305 237 1 462 230 108 12 chr11 110965487 110965698 -37817774 - LTR37A LTR ERV1 0 426 222 2416 75 0 3 chr11 110965798 110966106 -37817366 + AluY SINE Alu 1 307 -4 233 196 18 0 chr11 110966126 110966182 -37817290 - LTR37A LTR ERV1 -259 167 111 211 239 0 0 chr11 110967225 110967271 -37816201 + A-rich Low_complexity Low_complexity 1 46 0 187 315 9 46 chr11 110967665 110967773 -37815699 - MIR SINE MIR -41 221 118 2159 103 10 7 chr11 110967865 110968155 -37815317 - AluSx SINE Alu -21 291 1 26 0 0 0 chr11 110968528 110968554 -37814918 + AT_rich Low_complexity Low_complexity 1 26 0 433 304 0 33 chr11 110968625 110968809 -37814663 + GA-rich Low_complexity Low_complexity 3 180 0 708 188 28 7 chr11 110968858 110969002 -37814470 - MER5C DNA MER1_type -177 147 1 310 325 19 48 chr11 110969196 110969352 -37814120 + L3b LINE CR1 1214 1364 -219 1609 148 47 47 chr11 110969352 110969690 -37813782 - MER44D DNA MER2_type 0 609 2 310 325 19 48 chr11 110969690 110969739 -37813733 + L3b LINE CR1 1364 1413 -170 394 196 95 37 chr11 110970164 110970353 -37813119 - LTR37B LTR ERV1 0 468 269 235 202 83 24 chr11 110970725 110970809 -37812663 + MER34 LTR ERV1 449 537 -5 289 203 16 0 chr11 110970816 110970880 -37812592 - LTR37B LTR ERV1 -199 269 205 * 582 240 79 76 chr11 110970874 110971203 -37812269 + MER34C LTR ERV1 35 364 -221 343 208 110 26 chr11 110971266 110971420 -37812052 + MER34 LTR ERV1 376 542 0 1435 236 81 74 chr11 110971545 110972492 -37810980 - MER52A LTR ERV1 -4 1751 1 285 278 67 0 chr11 110972520 110972610 -37810862 - LTR37B LTR ERV1 -367 101 6 965 195 91 0 chr11 110972744 110972975 -37810497 - L1ME1 LINE L1 -6 6160 5909 1694 179 7 10 chr11 110973114 110973422 -37810050 - AluJo SINE Alu -3 309 3 331 339 0 8 chr11 110974263 110974390 -37809082 + MLT1H LTR MaLR 5 130 -419 244 138 154 0 chr11 110974636 110974701 -37808771 + MLT1H LTR MaLR 468 549 0 2190 191 75 40 chr11 110974970 110975640 -37807832 - LTR48 LTR ERV1 0 644 3 1140 252 17 65 chr11 110976109 110976364 -37807108 - L1ME1 LINE L1 -259 5911 5682 1377 236 98 65 chr11 110976364 110976937 -37806535 + MLT1E LTR MaLR 1 592 -1 1140 252 17 65 chr11 110976937 110977097 -37806375 - L1ME1 LINE L1 -488 5682 5516 566 219 250 5 chr11 110977118 110977310 -37806162 - MIR SINE MIR -15 247 9 193 303 67 22 chr11 110979403 110979492 -37803980 - MIR SINE MIR -142 120 28 513 271 56 7 chr11 110979667 110979849 -37803623 + MIR SINE MIR 70 262 0 225 338 14 0 chr11 110979941 110980012 -37803460 + MIR SINE MIR 42 113 -95 1790 225 54 6 chr11 110980016 110980500 -37802972 + MER97c DNA MER1_type? 99 605 -485 754 186 7 0 chr11 110980991 110981131 -37802341 - AluJo SINE Alu -171 141 1 296 286 11 0 chr11 110981141 110981232 -37802240 + MER97c DNA MER1_type? 999 1090 0 348 188 0 0 chr11 110981311 110981380 -37802092 + (TA)n Simple_repeat Simple_repeat 2 70 0 335 215 168 65 chr11 110981387 110981601 -37801871 + Charlie8 DNA MER1_type 43 278 -2139 408 88 0 0 chr11 110981815 110981872 -37801600 + (TG)n Simple_repeat Simple_repeat 2 58 0 293 325 0 0 chr11 110982012 110982092 -37801380 + CT-rich Low_complexity Low_complexity 3 82 0 255 279 167 54 chr11 110982115 110982208 -37801264 - MIR SINE MIR -14 248 167 1823 220 93 35 chr11 110982208 110982439 -37801033 + MER119 DNA MER1_type 2 218 -365 2170 113 27 0 chr11 110982439 110982731 -37800741 + AluSg SINE Alu 1 300 -10 1823 220 93 35 chr11 110982731 110983048 -37800424 + MER119 DNA MER1_type 218 582 -1 255 279 167 54 chr11 110983048 110983176 -37800296 - MIR SINE MIR -95 167 2 216 0 0 0 chr11 110983865 110983889 -37799583 + (A)n Simple_repeat Simple_repeat 1 24 0 707 195 87 40 chr11 110984029 110984306 -37799166 - MER34B LTR ERV1 0 565 276 607 151 0 103 chr11 110984342 110984488 -37798984 - MER34B LTR ERV1 -434 131 1 647 361 47 22 chr11 110984769 110985279 -37798193 + HERVL LTR ERVL 3891 4413 -1241 254 318 12 12 chr11 110985391 110985476 -37797996 + L2 LINE L2 3187 3271 -1 1344 198 63 15 chr11 110985494 110985762 -37797710 + AluJo SINE Alu 1 281 -31 503 149 0 11 chr11 110985765 110985859 -37797613 + (GGAA)n Simple_repeat Simple_repeat 3 95 0 2235 121 0 0 chr11 110986153 110986459 -37797013 + AluSq SINE Alu 1 306 -7 218 243 189 0 chr11 110986467 110986541 -37796931 + L2 LINE L2 3184 3271 -1 409 296 101 52 chr11 110986687 110986974 -37796498 - MLT1K LTR MaLR 0 588 288 2114 161 0 0 chr11 110986980 110987291 -37796181 + AluJo SINE Alu 1 311 -1 276 319 50 35 chr11 110987618 110987759 -37795713 - L2 LINE L2 -400 2914 2772 789 200 70 60 chr11 110987897 110988112 -37795360 + MIR SINE MIR 8 224 -38 25 31 0 0 chr11 110988186 110988218 -37795254 + AT_rich Low_complexity Low_complexity 1 32 0 11967 123 110 5 chr11 110988766 110991510 -37791962 - L1PBa LINE L1 -3204 3658 636 1089 139 21 0 chr11 110991512 110991706 -37791766 - L1PBa LINE L1 -6663 200 3 955 129 0 7 chr11 110991727 110991866 -37791606 - FLAM_C SINE Alu -5 138 1 535 254 62 34 chr11 110993903 110994080 -37789392 - MIR SINE MIR 0 262 81 4251 171 18 29 chr11 110994233 110995421 -37788051 + L1MB4 LINE L1 5005 6170 -10 185 0 0 39 chr11 110995713 110995739 -37787733 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 5602 144 41 32 chr11 110996561 110996723 -37786749 - L1MC1 LINE L1 0 6333 6174 2239 120 0 0 chr11 110996723 110997031 -37786441 - AluSx SINE Alu -4 308 1 5602 144 41 32 chr11 110997031 110997951 -37785521 - L1MC1 LINE L1 -159 6174 5246 2034 145 0 19 chr11 110997951 110998262 -37785210 - AluSx SINE Alu -7 305 1 5602 144 41 32 chr11 110998262 110998337 -37785135 - L1MC1 LINE L1 -1087 5246 5173 194 238 143 16 chr11 110998412 110998475 -37784997 - L2 LINE L2 0 3313 3243 23 54 0 0 chr11 110999478 110999515 -37783957 + AT_rich Low_complexity Low_complexity 1 37 0 404 373 25 10 chr11 111000140 111000341 -37783131 + MIR SINE MIR 12 215 -47 280 307 68 43 chr11 111000468 111000631 -37782841 + MIR SINE MIR 32 198 -64 261 256 26 0 chr11 111000989 111001067 -37782405 + MER116 DNA Mariner 1 80 0 720 261 84 10 chr11 111001534 111001737 -37781735 + MIR SINE MIR 35 252 -10 389 286 62 76 chr11 111001945 111002155 -37781317 + MIR3 SINE MIR 1 207 -1 23 0 0 0 chr11 111003192 111003215 -37780257 + AT_rich Low_complexity Low_complexity 1 23 0 912 193 129 20 chr11 111003242 111003444 -37780028 + MER58A DNA MER1_type 1 224 0 1491 171 4 0 chr11 111003474 111003731 -37779741 - Tigger3(Golem) DNA MER2_type 0 3029 2772 722 178 44 0 chr11 111003728 111003863 -37779609 - Tigger3(Golem) DNA MER2_type -2887 142 2 * 2132 129 10 0 chr11 111004041 111004335 -37779137 + AluSx SINE Alu 1 297 -15 29 0 0 0 chr11 111004335 111004364 -37779108 + AT_rich Low_complexity Low_complexity 1 29 0 188 182 23 0 chr11 111004399 111004443 -37779029 + (TATATG)n Simple_repeat Simple_repeat 5 49 0 1956 95 68 34 chr11 111005109 111005405 -37778067 - AluSx SINE Alu -6 306 1 27 0 0 0 chr11 111005703 111005730 -37777742 + AT_rich Low_complexity Low_complexity 1 27 0 279 243 0 27 chr11 111005731 111005805 -37777667 - MIR SINE MIR -16 246 175 616 276 43 16 chr11 111005829 111006014 -37777458 + MIR SINE MIR 27 216 -46 23 0 0 0 chr11 111006016 111006039 -37777433 + AT_rich Low_complexity Low_complexity 1 23 0 456 327 56 19 chr11 111006741 111006903 -37776569 - MIR SINE MIR -82 180 13 21 57 0 0 chr11 111007087 111007122 -37776350 + AT_rich Low_complexity Low_complexity 1 35 0 298 356 5 9 chr11 111007983 111008100 -37775372 - MIR SINE MIR -70 138 17 1840 140 20 7 chr11 111009084 111009376 -37774096 + AluSx SINE Alu 1 296 -16 674 234 136 19 chr11 111009376 111009590 -37773882 - MIR SINE MIR -2 260 22 2112 105 17 7 chr11 111010651 111010947 -37772525 - AluSq SINE Alu -14 299 1 224 313 139 0 chr11 111011487 111011602 -37771870 - MIR3 SINE MIR 0 208 78 231 250 0 0 chr11 111011693 111011749 -37771723 + MLT1K LTR MaLR 2 57 -531 674 80 30 0 chr11 111012300 111012400 -37771072 - L1MB2 LINE L1 0 6171 6069 754 193 79 35 chr11 111012411 111012481 -37770991 - MER20 DNA MER1_type -8 211 146 1740 204 0 0 chr11 111012481 111012780 -37770692 + AluJo SINE Alu 1 299 -13 754 193 79 35 chr11 111012780 111012911 -37770561 - MER20 DNA MER1_type -73 146 1 1986 160 3 0 chr11 111013113 111013406 -37770066 + AluSx SINE Alu 1 294 -18 2286 153 84 2 chr11 111014117 111014535 -37768937 - LTR47A LTR ERVL 0 452 1 339 299 33 51 chr11 111014595 111014716 -37768756 + HAL1 LINE L1 906 1028 -1479 2028 121 3 0 chr11 111014716 111015027 -37768445 + AluSx SINE Alu 1 312 0 339 299 33 51 chr11 111015027 111015235 -37768237 + HAL1 LINE L1 1028 1230 -1277 1467 261 69 45 chr11 111015241 111015882 -37767590 + MLT2F LTR ERVL 8 663 0 533 273 92 63 chr11 111015918 111016267 -37767205 + HAL1 LINE L1 1245 1582 -925 1681 202 86 27 chr11 111016267 111016707 -37766765 + MLT1C LTR MaLR 2 467 0 533 273 92 63 chr11 111016707 111016971 -37766501 + HAL1 LINE L1 1582 1922 -585 454 171 0 0 chr11 111017731 111017807 -37765665 + AluJb SINE Alu 1 76 -236 1105 167 8 67 chr11 111017956 111018010 -37765462 + AluJb SINE Alu 83 139 -173 2149 123 0 0 chr11 111018010 111018302 -37765170 + AluSx SINE Alu 1 292 -20 1048 26 40 0 chr11 111018308 111018459 -37765013 + (TAGA)n Simple_repeat Simple_repeat 2 158 0 1105 167 8 67 chr11 111018459 111018636 -37764836 + AluJb SINE Alu 144 307 -5 313 279 19 29 chr11 111018636 111018740 -37764732 + HAL1 LINE L1 2312 2414 -93 386 240 83 8 chr11 111018822 111018943 -37764529 - L1ME4a LINE L1 -14 6107 5978 304 380 13 0 chr11 111019623 111019773 -37763699 - L1MEd LINE L1 -5487 632 481 1491 138 0 0 chr11 111019856 111020073 -37763399 - AluSg/x SINE Alu -11 301 85 246 254 0 0 chr11 111020187 111020250 -37763222 + HsTC2 DNA Tc2 1819 1881 -17 2027 176 32 64 chr11 111020628 111020704 -37762768 - MSTB2 LTR MaLR 0 457 380 2135 145 0 0 chr11 111020704 111021001 -37762471 + AluSx SINE Alu 1 297 -15 2027 176 32 64 chr11 111021001 111021396 -37762076 - MSTB2 LTR MaLR -77 380 1 269 0 0 53 chr11 111021936 111021974 -37761498 + (TTG)n Simple_repeat Simple_repeat 2 37 0 199 326 23 68 chr11 111022383 111022515 -37760957 + L2 LINE L2 2971 3096 -176 3879 158 42 22 chr11 111022817 111023502 -37759970 + L1M4c LINE L1 16 719 -5665 2608 38 0 13 chr11 111023502 111023816 -37759656 + AluY SINE Alu 1 310 -1 3879 158 42 22 chr11 111023816 111023885 -37759587 + L1M4c LINE L1 719 785 -5599 306 71 0 0 chr11 111023882 111023924 -37759548 - L1P3 LINE L1 -5044 1417 1376 * 855 162 0 17 chr11 111023980 111024153 -37759319 + L1MA10 LINE L1 6163 6332 -2 1890 91 70 0 chr11 111024325 111024611 -37758861 + L1PA13 LINE L1 5855 6160 -3 21485 68 5 7 chr11 111024808 111028138 -37755334 + L1PA8 LINE L1 2345 5666 -506 2168 111 3 0 chr11 111028138 111028435 -37755037 + AluSq SINE Alu 7 304 -9 21485 68 5 7 chr11 111028435 111028676 -37754796 + L1PA8 LINE L1 5666 5906 -266 4183 187 42 9 chr11 111028681 111029798 -37753674 + L1MB3 LINE L1 5031 6181 -2 24 67 0 0 chr11 111029880 111029925 -37753547 + AT_rich Low_complexity Low_complexity 1 45 0 1615 193 45 53 chr11 111030468 111030867 -37752605 + MSTD LTR MaLR 1 396 0 186 43 0 0 chr11 111030955 111030978 -37752494 + (T)n Simple_repeat Simple_repeat 1 23 0 2037 128 17 0 chr11 111031165 111031454 -37752018 - AluSq SINE Alu -19 294 1 830 239 52 9 chr11 111031488 111031701 -37751771 + MIR SINE MIR 31 252 -10 1564 143 18 63 chr11 111032167 111032453 -37751019 - AluJo SINE Alu -39 273 1 1373 270 78 27 chr11 111033082 111033758 -37749714 + L1M2a LINE L1 1587 2321 -4847 869 275 85 59 chr11 111033739 111033839 -37749633 + L1M2a LINE L1 329 425 -6743 * 2458 80 0 0 chr11 111033839 111034140 -37749332 + AluSp SINE Alu 1 301 -12 869 275 85 59 chr11 111034140 111034512 -37748960 + L1M2a LINE L1 425 813 -6355 401 351 60 0 chr11 111034679 111034847 -37748625 + L1M2a LINE L1 1098 1275 -5893 345 260 0 0 chr11 111035481 111035577 -37747895 + L1PA15-16 LINE L1 1474 1569 -5280 * 450 247 62 67 chr11 111035557 111035751 -37747721 + L1PA15-16 LINE L1 1336 1528 -5322 2667 214 66 38 chr11 111035778 111036038 -37747434 + L1M2a LINE L1 2499 2750 -4417 2422 72 0 3 chr11 111036038 111036342 -37747130 + AluSx SINE Alu 1 303 -9 2667 214 66 38 chr11 111036342 111036742 -37746730 + L1M2a LINE L1 2750 3138 -4029 2392 170 39 2 chr11 111036742 111037153 -37746319 + MSTB LTR MaLR 1 426 0 2667 214 66 38 chr11 111037153 111037439 -37746033 + L1M2a LINE L1 3138 3415 -3752 509 255 28 102 chr11 111037439 111037694 -37745778 + MER8 DNA MER2_type 1 236 -3 2667 214 66 38 chr11 111037694 111038289 -37745183 + L1M2a LINE L1 3415 4095 -3072 * 4387 128 109 28 chr11 111038286 111038562 -37744910 + L1MA8 LINE L1 5183 5435 -856 2122 128 0 19 chr11 111038562 111038874 -37744598 + AluSx SINE Alu 1 306 -6 4387 128 109 28 chr11 111038874 111038986 -37744486 + L1MA8 LINE L1 5435 5536 -755 1714 118 260 22 chr11 111038986 111039351 -37744121 + LTR47A LTR ERVL 1 452 0 4387 128 109 28 chr11 111039351 111039950 -37743522 + L1MA8 LINE L1 5536 6249 -42 598 223 83 35 chr11 111039993 111040212 -37743260 - L1ME3A LINE L1 -47 6117 5882 1135 74 74 16 chr11 111040733 111040923 -37742549 + LTR1 LTR ERV1 1 201 -584 3140 85 17 27 chr11 111040923 111041405 -37742067 + LTR15 LTR ERV1 1 477 -16 2880 141 92 6 chr11 111041462 111042007 -37741465 + LTR1 LTR ERV1 194 785 0 589 183 46 0 chr11 111042411 111042542 -37740930 + L1M2a LINE L1 4635 4771 -2396 201 323 164 45 chr11 111042611 111042880 -37740592 + L2 LINE L2 2675 2975 -339 237 259 213 19 chr11 111043227 111043335 -37740137 + L3 LINE CR1 1376 1504 -73 198 312 64 55 chr11 111043932 111044041 -37739431 - MIR SINE MIR -78 130 21 360 138 0 15 chr11 111044733 111044798 -37738674 - Charlie1a DNA MER1_type -1298 157 94 1663 103 0 0 chr11 111044814 111045028 -37738444 - AluSq SINE Alu -99 214 1 2227 108 20 0 chr11 111045413 111045709 -37737763 + AluSq SINE Alu 1 302 -11 255 259 76 76 chr11 111045755 111045886 -37737586 + MIR SINE MIR 32 162 -100 1909 155 83 6 chr11 111046387 111046749 -37736723 - MLT1B LTR MaLR 0 390 1 276 260 57 79 chr11 111049202 111049379 -37734093 - MIR SINE MIR -42 220 48 598 202 120 22 chr11 111049442 111049624 -37733848 + MIR SINE MIR 38 238 -24 630 265 48 43 chr11 111050421 111050580 -37732892 - MIR SINE MIR -31 231 69 2517 67 0 0 chr11 111050580 111050880 -37732592 - AluY SINE Alu -11 300 1 630 265 48 43 chr11 111050880 111050950 -37732522 - MIR SINE MIR -193 69 1 199 220 20 40 chr11 111051136 111051186 -37732286 + L2 LINE L2 3259 3307 -6 40873 33 21 1 chr11 111051186 111057212 -37726260 + L1PA2 LINE L1 2 6152 -3 372 346 0 23 chr11 111058270 111058403 -37725069 + MER5B DNA MER1_type 46 175 -3 260 237 82 89 chr11 111058635 111058766 -37724706 - L2 LINE L2 -148 3165 3036 415 211 58 10 chr11 111058766 111058870 -37724602 - MER91B DNA MER1_type -1 189 81 341 335 55 50 chr11 111058965 111059165 -37724307 + L1ME3A LINE L1 5629 5829 -341 2342 309 190 32 chr11 111059337 111059708 -37723764 - L2 LINE L2 -313 3000 2689 2172 95 3 14 chr11 111059708 111060004 -37723468 + AluY SINE Alu 1 293 -18 2342 309 190 32 chr11 111060004 111060484 -37722988 - L2 LINE L2 -624 2689 2286 1644 184 53 7 chr11 111060484 111060601 -37722871 + AluJb SINE Alu 1 111 -201 255 31 0 0 chr11 111060601 111060633 -37722839 + (CA)n Simple_repeat Simple_repeat 2 33 0 1644 184 53 7 chr11 111060633 111060798 -37722674 + AluJb SINE Alu 111 296 -16 2342 309 190 32 chr11 111060798 111061537 -37721935 - L2 LINE L2 -1027 2286 1159 474 306 72 14 chr11 111061590 111061799 -37721673 - L3 LINE CR1 -353 1224 1004 270 0 0 0 chr11 111062160 111062190 -37721282 + (TC)n Simple_repeat Simple_repeat 2 31 0 216 0 0 0 chr11 111062193 111062217 -37721255 + (TA)n Simple_repeat Simple_repeat 1 24 0 2111 119 25 0 chr11 111062297 111062582 -37720890 - AluSx SINE Alu -20 292 1 483 165 0 0 chr11 111063244 111063323 -37720149 + MADE1 DNA Mariner 2 80 0 362 261 78 13 chr11 111063531 111063684 -37719788 + MER112 DNA MER1_type 2 164 -96 913 224 73 13 chr11 111064052 111064369 -37719103 + L1M4 LINE L1 4898 5233 -913 248 212 30 13 chr11 111064368 111064447 -37719025 + L1MA10 LINE L1 2 1014 -6084 * 11893 211 66 44 chr11 111065280 111066090 -37717382 + L1MA10 LINE L1 1630 2421 -4934 2185 116 10 10 chr11 111066090 111066401 -37717071 + AluSx SINE Alu 1 311 -1 11893 211 66 44 chr11 111066401 111067887 -37715585 + L1MA10 LINE L1 2421 3873 -3482 1453 171 4 0 chr11 111067887 111068121 -37715351 - MER46A DNA MER2_type 0 236 2 11893 211 66 44 chr11 111068121 111069386 -37714086 + L1MA10 LINE L1 3873 5109 -2246 2222 104 31 0 chr11 111069386 111069696 -37713776 + AluSx SINE Alu 1 319 0 11893 211 66 44 chr11 111069696 111069860 -37713612 + L1MA10 LINE L1 5109 5268 -2087 2275 103 0 7 chr11 111069860 111070160 -37713312 + AluSg SINE Alu 1 298 -12 11893 211 66 44 chr11 111070160 111071863 -37711609 + L1MA10 LINE L1 5268 6932 -423 1840 144 48 3 chr11 111071863 111072155 -37711317 + AluSx SINE Alu 1 305 -7 11893 211 66 44 chr11 111072155 111072227 -37711245 + L1MA10 LINE L1 6932 7001 -354 1227 198 48 0 chr11 111072227 111072454 -37711018 - MER8 DNA MER2_type 0 239 2 11893 211 66 44 chr11 111072454 111072707 -37710765 + L1MA10 LINE L1 7001 7224 -131 1830 156 40 13 chr11 111072743 111073045 -37710427 + AluSx SINE Alu 1 310 -2 23 33 0 0 chr11 111073300 111073330 -37710142 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr11 111073367 111073398 -37710074 + AT_rich Low_complexity Low_complexity 1 31 0 1272 147 21 96 chr11 111073531 111073630 -37709842 + L1MB3 LINE L1 5883 5988 -195 2070 105 0 64 chr11 111073630 111073943 -37709529 + AluSx SINE Alu 1 293 -19 2626 58 0 3 chr11 111073947 111074257 -37709215 + AluY SINE Alu 1 309 -2 1272 147 21 96 chr11 111074257 111074479 -37708993 + L1MB3 LINE L1 5991 6182 -1 249 33 0 0 chr11 111074715 111074745 -37708727 + (T)n Simple_repeat Simple_repeat 1 30 0 2344 115 0 0 chr11 111074904 111075209 -37708263 - AluSx SINE Alu -7 305 1 1421 237 94 16 chr11 111076084 111076510 -37706962 + MLT1C LTR MaLR 9 467 0 1662 158 17 20 chr11 111076822 111076977 -37706495 - AluJo SINE Alu -21 291 136 2101 96 52 7 chr11 111076977 111077268 -37706204 - AluSq SINE Alu -9 304 1 1662 158 17 20 chr11 111077268 111077404 -37706068 - AluJo SINE Alu -176 136 1 344 264 186 29 chr11 111077406 111077546 -37705926 + MLT1J LTR MaLR 310 471 -40 210 298 73 42 chr11 111077738 111077929 -37705543 - L2 LINE L2 -41 3272 3076 2160 139 0 0 chr11 111077948 111078258 -37705214 - AluSg SINE Alu 0 310 1 1083 101 0 7 chr11 111078260 111078399 -37705073 - AluSq/x SINE Alu -175 138 1 553 168 45 117 chr11 111078400 111078579 -37704893 - MER58 DNA MER1_type -2254 166 1 201 143 0 0 chr11 111078950 111078985 -37704487 + L2 LINE L2 3236 3270 -2 879 142 39 0 chr11 111081002 111081129 -37702343 + MER2 DNA MER2_type 1 132 -213 1052 130 5 8 chr11 111081129 111081345 -37702127 - AluSc SINE Alu -12 297 2 1055 181 62 0 chr11 111081347 111081453 -37702019 + MER2 DNA MER2_type 122 220 -125 1870 117 100 0 chr11 111081453 111081734 -37701738 + AluSx SINE Alu 1 309 -3 1055 181 62 0 chr11 111081734 111081837 -37701635 + MER2 DNA MER2_type 220 344 -1 2473 39 4 0 chr11 111081999 111082304 -37701168 - AluY SINE Alu 0 306 1 2245 117 7 3 chr11 111082352 111082661 -37700811 - AluSx SINE Alu -2 310 1 198 428 52 0 chr11 111083015 111083209 -37700263 - L2 LINE L2 -624 2690 2487 259 292 50 42 chr11 111083221 111083341 -37700131 - L2 LINE L2 -575 2739 2619 1895 282 66 52 chr11 111084093 111084497 -37698975 + HERV16 LTR ERVL 732 1129 -3867 2275 124 0 0 chr11 111084497 111084804 -37698668 + AluSx SINE Alu 1 307 -5 1895 282 66 52 chr11 111084804 111084961 -37698511 + HERV16 LTR ERVL 1129 1282 -3714 1430 181 77 42 chr11 111084961 111085314 -37698158 + MLT1A1 LTR MaLR 1 365 0 1895 282 66 52 chr11 111085314 111085682 -37697790 + HERV16 LTR ERVL 1282 1643 -3353 2302 102 0 0 chr11 111085682 111085976 -37697496 - AluSx SINE Alu -18 294 1 1895 282 66 52 chr11 111085976 111086495 -37696977 + HERV16 LTR ERVL 1643 2278 -2718 293 244 30 92 chr11 111086529 111086630 -37696842 - L2 LINE L2 -163 3150 3061 2214 117 0 19 chr11 111086630 111086947 -37696525 + AluSx SINE Alu 1 311 -1 293 244 30 92 chr11 111086947 111087009 -37696463 - L2 LINE L2 -252 3061 2997 * 485 235 29 47 chr11 111086996 111087269 -37696203 - L2 LINE L2 -816 2498 2154 1075 261 78 8 chr11 111087295 111087655 -37695817 - L2 LINE L2 -1559 1755 1371 242 236 56 14 chr11 111087666 111087738 -37695734 - L2 LINE L2 -534 2780 2706 511 244 87 62 chr11 111087893 111088135 -37695337 + L2 LINE L2 3064 3311 -2 257 152 0 22 chr11 111088224 111088270 -37695202 - AluSq SINE Alu -125 178 134 2117 110 38 0 chr11 111088381 111088671 -37694801 + AluSq SINE Alu 1 301 -12 203 365 29 36 chr11 111090406 111090543 -37692929 + L2 LINE L2 2686 2821 -493 239 252 235 25 chr11 111090707 111090826 -37692646 + L2 LINE L2 3170 3313 0 241 270 60 0 chr11 111090902 111091002 -37692470 - MIR SINE MIR -69 193 88 434 100 29 29 chr11 111092727 111092797 -37690675 + FLAM SINE Alu 48 117 -26 237 65 0 0 chr11 111092831 111092862 -37690610 + (A)n Simple_repeat Simple_repeat 1 31 0 441 148 0 134 chr11 111092882 111092999 -37690473 + AluJo/FLAM SINE Alu 5 99 -203 2477 64 0 3 chr11 111092999 111093295 -37690177 - AluY SINE Alu -15 296 2 441 148 0 134 chr11 111093295 111093326 -37690146 + AluJo/FLAM SINE Alu 99 133 -169 21 0 0 0 chr11 111093982 111094003 -37689469 + AT_rich Low_complexity Low_complexity 1 21 0 2085 128 17 7 chr11 111094341 111094639 -37688833 - AluSx SINE Alu -11 301 1 2323 108 0 0 chr11 111095096 111095392 -37688080 - AluSx SINE Alu -15 297 2 21 0 0 31 chr11 111095392 111095405 -37688067 + AT_rich Low_complexity Low_complexity 1 13 -18 2478 70 0 0 chr11 111095405 111095704 -37687768 - AluY SINE Alu -12 299 1 21 0 0 31 chr11 111095704 111095722 -37687750 + AT_rich Low_complexity Low_complexity 13 31 0 1814 170 0 7 chr11 111096768 111097062 -37686410 - AluSx SINE Alu -7 305 14 1854 114 4 25 chr11 111097068 111097348 -37686124 - AluSx SINE Alu -12 300 27 705 136 0 0 chr11 111097348 111097451 -37686021 - AluSq/x SINE Alu -208 105 3 526 309 100 53 chr11 111097545 111097885 -37685587 + LTR67 LTR ERVL 2 357 -200 269 239 0 30 chr11 111097914 111097981 -37685491 + MLT2B3 LTR ERVL 1 65 -489 2063 134 7 0 chr11 111098214 111098512 -37684960 + AluSx SINE Alu 1 300 -12 1065 132 0 6 chr11 111098814 111098973 -37684499 + AluSg/x SINE Alu 135 292 -18 2146 119 0 10 chr11 111098985 111099288 -37684184 + AluSx SINE Alu 1 300 -12 22 56 0 0 chr11 111099288 111099324 -37684148 + AT_rich Low_complexity Low_complexity 1 36 0 384 290 101 95 chr11 111099501 111099658 -37683814 + ERVL LTR ERVL 1227 1382 -4382 2353 96 0 10 chr11 111099658 111099960 -37683512 - AluSq SINE Alu -14 299 1 384 290 101 95 chr11 111099960 111100326 -37683146 + ERVL LTR ERVL 1382 1753 -4011 251 248 64 28 chr11 111100618 111100727 -37682745 + L1MC4a LINE L1 5254 5366 -2442 1847 78 13 0 chr11 111100731 111100963 -37682509 + AluSx SINE Alu 1 235 -77 1625 229 62 66 chr11 111100968 111101074 -37682398 + L1MC4a LINE L1 5348 5453 -849 2150 96 0 7 chr11 111101074 111101355 -37682117 + AluSx SINE Alu 1 279 -33 189 0 0 0 chr11 111101357 111101378 -37682094 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 1625 229 62 66 chr11 111101378 111101861 -37681611 + L1MC4a LINE L1 5454 5390 -912 2285 124 0 0 chr11 111101861 111102167 -37681305 + AluSx SINE Alu 5 310 -2 1625 229 62 66 chr11 111102167 111102225 -37681247 + L1MC4a LINE L1 5389 5446 -856 486 270 21 53 chr11 111102393 111102582 -37680890 - MLT1J LTR MaLR 0 511 329 1130 310 40 62 chr11 111102742 111103000 -37680472 + ERVL LTR ERVL 3072 3334 -2430 2267 103 36 0 chr11 111103000 111103301 -37680171 - AluSx SINE Alu 0 312 1 1130 310 40 62 chr11 111103301 111103593 -37679879 + ERVL LTR ERVL 3334 3610 -2154 2234 113 0 19 chr11 111103720 111104038 -37679434 + AluJb SINE Alu 1 312 0 1937 122 10 48 chr11 111104774 111105085 -37678387 + AluSx SINE Alu 1 299 -13 1990 157 0 3 chr11 111105829 111106141 -37677331 + AluJb SINE Alu 1 311 -1 204 225 0 0 chr11 111106513 111106553 -37676919 + CT-rich Low_complexity Low_complexity 78 117 0 1881 153 103 3 chr11 111106600 111106960 -37676512 + MSTD LTR MaLR 1 396 0 541 285 99 0 chr11 111107402 111107655 -37675817 + L2 LINE L2 1806 2083 -1231 685 308 112 20 chr11 111107661 111107766 -37675706 - L2 LINE L2 -40 3273 3179 2028 117 13 17 chr11 111107766 111108064 -37675408 - AluSc SINE Alu -12 297 1 685 308 112 20 chr11 111108064 111108478 -37674994 - L2 LINE L2 -134 3179 2693 325 305 164 20 chr11 111108489 111108794 -37674678 + L2 LINE L2 2352 2700 -614 2159 135 0 10 chr11 111108892 111109203 -37674269 - AluJb SINE Alu -4 308 1 209 295 26 26 chr11 111109210 111109288 -37674184 + L2 LINE L2 2948 3025 -247 2315 96 0 6 chr11 111109288 111109600 -37673872 + AluY SINE Alu 1 310 -1 536 212 98 15 chr11 111109794 111109926 -37673546 - MLT1I LTR MaLR -239 170 28 2216 107 3 3 chr11 111110444 111110743 -37672729 - AluSg SINE Alu -11 299 1 1583 163 0 34 chr11 111110858 111111152 -37672320 + AluJo SINE Alu 29 312 0 2134 100 0 11 chr11 111111172 111111476 -37671996 - AluSx SINE Alu 0 305 5 1476 53 0 0 chr11 111111487 111111657 -37671815 - AluSg/x SINE Alu -20 292 123 2160 136 0 0 chr11 111112494 111112796 -37670676 + AluSx SINE Alu 1 302 -10 3499 166 112 37 chr11 111112878 111113710 -37669762 - L1MB7 LINE L1 0 6184 5291 878 159 0 0 chr11 111113766 111113898 -37669574 - FLAM_C SINE Alu -11 132 1 22 0 0 0 chr11 111113923 111113945 -37669527 + AT_rich Low_complexity Low_complexity 1 22 0 530 138 35 0 chr11 111113966 111114053 -37669419 + L1MA8 LINE L1 6066 6155 -136 * 2569 144 32 35 chr11 111114049 111114936 -37668536 + L1MA7 LINE L1 4835 5723 -568 2005 128 77 20 chr11 111114936 111115289 -37668183 - THE1C LTR MaLR 0 375 3 10359 97 40 42 chr11 111115291 111116874 -37666598 - THE1C-int LTR MaLR 0 1580 1 1969 118 86 17 chr11 111116877 111117225 -37666247 - THE1C LTR MaLR -3 372 1 2569 144 32 35 chr11 111117225 111117691 -37665781 + L1MA7 LINE L1 5726 6289 -2 551 101 131 0 chr11 111117691 111117785 -37665687 + L1MA8 LINE L1 6163 6274 -17 282 234 42 120 chr11 111118109 111118276 -37665196 + MIR SINE MIR 86 239 -23 272 365 74 55 chr11 111118281 111118645 -37664827 + L2 LINE L2 2859 3229 -43 2047 119 3 16 chr11 111120347 111120650 -37662822 + AluSx SINE Alu 1 299 -13 2263 105 0 0 chr11 111121098 111121393 -37662079 - AluSx SINE Alu -13 299 5 17609 51 11 1 chr11 111124134 111126543 -37656929 - L1P LINE L1 -1439 4707 2276 5154 166 23 27 chr11 111126539 111127549 -37655923 - L1P LINE L1 -5130 1016 11 * 2376 163 39 5 chr11 111127623 111128035 -37655437 - MSTB LTR MaLR 0 426 1 8892 170 35 13 chr11 111128035 111129266 -37654206 - MSTB-int LTR MaLR 0 1651 374 2544 60 0 0 chr11 111129266 111129566 -37653906 - AluY SINE Alu -11 300 1 8892 170 35 13 chr11 111129566 111129949 -37653523 - MSTB-int LTR MaLR -1277 374 1 2526 156 26 2 chr11 111129949 111130365 -37653107 - MSTB LTR MaLR 0 426 1 388 293 15 15 chr11 111130666 111130799 -37652673 + GA-rich Low_complexity Low_complexity 2 134 0 399 41 0 0 chr11 111131145 111131194 -37652278 + (TG)n Simple_repeat Simple_repeat 2 50 0 270 316 41 10 chr11 111131402 111131500 -37651972 - L3 LINE CR1 -124 1453 1353 * 351 291 177 7 chr11 111131499 111131640 -37651832 - L2 LINE L2 -9 3304 3140 204 284 304 7 chr11 111131704 111131852 -37651620 - L2 LINE L2 -1045 2269 2078 539 342 102 57 chr11 111132638 111133302 -37650170 - L3 LINE CR1 -808 769 76 3126 190 45 17 chr11 111133671 111134475 -37648997 + Charlie5 DNA MER1_type 12 837 -1775 2339 89 0 3 chr11 111134926 111135229 -37648243 - AluSx SINE Alu -10 302 1 2055 173 59 2 chr11 111135238 111135926 -37647546 + Charlie5 DNA MER1_type 838 1623 -989 2945 142 67 7 chr11 111135928 111136492 -37646980 + LTR1 LTR ERV1 183 780 -5 2388 93 0 0 chr11 111136492 111136802 -37646670 - AluSg SINE Alu 0 310 1 2530 230 36 51 chr11 111136816 111137477 -37645995 + L1ME2 LINE L1 5002 5671 -493 750 138 0 97 chr11 111137477 111137622 -37645850 + FLAM_C SINE Alu 1 131 -2 2530 230 36 51 chr11 111137622 111137644 -37645828 + L1ME2 LINE L1 5671 5692 -472 2028 139 0 3 chr11 111137644 111137938 -37645534 + AluSx SINE Alu 1 293 -19 2530 230 36 51 chr11 111137938 111138023 -37645449 + L1ME2 LINE L1 5692 5777 -387 2253 104 0 3 chr11 111138023 111138320 -37645152 + AluSq SINE Alu 1 296 -17 2530 230 36 51 chr11 111138320 111138712 -37644760 + L1ME2 LINE L1 5777 6153 -11 23 0 0 0 chr11 111139088 111139111 -37644361 + AT_rich Low_complexity Low_complexity 1 23 0 1574 193 19 47 chr11 111139275 111139596 -37643876 + AluJo SINE Alu 1 312 0 522 115 0 0 chr11 111139770 111139848 -37643624 + U6 snRNA snRNA 1 78 -29 284 266 75 0 chr11 111140012 111140106 -37643366 - L2 LINE L2 -2 3270 3170 2064 141 0 3 chr11 111140268 111140581 -37642891 - AluSx SINE Alu 0 312 1 827 253 20 51 chr11 111140586 111140882 -37642590 + Charlie2 DNA MER1_type 4 290 -2572 1432 246 115 47 chr11 111140909 111140943 -37642529 + Charlie2 DNA MER1_type 1856 1886 -976 651 219 21 21 chr11 111140943 111141130 -37642342 - MER53 DNA DNA 0 189 3 1432 246 115 47 chr11 111141130 111141584 -37641888 + Charlie2 DNA MER1_type 1886 2308 -554 2074 131 10 0 chr11 111141584 111141881 -37641591 - AluSx SINE Alu -12 300 1 1432 246 115 47 chr11 111141881 111142330 -37641142 + Charlie2 DNA MER1_type 2308 2858 -4 21 0 0 0 chr11 111142859 111142880 -37640592 + AT_rich Low_complexity Low_complexity 1 21 0 345 47 0 0 chr11 111143638 111143681 -37639791 + (TG)n Simple_repeat Simple_repeat 1 43 0 601 257 49 41 chr11 111144187 111144432 -37639040 - MIR SINE MIR -8 254 8 434 279 217 55 chr11 111144760 111145093 -37638379 - L2 LINE L2 -1208 2106 1829 2341 89 0 10 chr11 111145093 111145395 -37638077 - AluY SINE Alu -12 299 1 434 279 217 55 chr11 111145395 111145774 -37637698 - L2 LINE L2 -1485 1829 1278 1823 123 0 19 chr11 111145958 111146218 -37637254 - AluSx SINE Alu -57 255 1 186 43 0 0 chr11 111146299 111146322 -37637150 + (TC)n Simple_repeat Simple_repeat 2 24 0 1584 168 11 25 chr11 111146322 111146602 -37636870 - AluJb SINE Alu -24 288 13 1152 242 33 76 chr11 111146610 111147122 -37636350 - Charlie8 DNA MER1_type -1888 529 40 532 263 38 11 chr11 111147134 111147320 -37636152 + L1MC4a LINE L1 7618 7808 0 2098 120 0 3 chr11 111147397 111147704 -37635768 - AluSx SINE Alu 0 307 2 227 298 0 0 chr11 111147735 111147782 -37635690 + L2 LINE L2 3205 3251 -21 234 0 0 0 chr11 111148829 111148855 -37634617 + (A)n Simple_repeat Simple_repeat 1 26 0 22 35 0 0 chr11 111149569 111149598 -37633874 + AT_rich Low_complexity Low_complexity 1 29 0 511 247 78 0 chr11 111149826 111149992 -37633480 - MER104 DNA MER2_type -1 179 1 24 0 0 0 chr11 111150431 111150455 -37633017 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr11 111151432 111151461 -37632011 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr11 111151819 111151849 -37631623 + AT_rich Low_complexity Low_complexity 1 30 0 371 235 7 44 chr11 111151849 111151985 -37631487 - HAL1b LINE L1 -8 1340 1210 193 118 39 0 chr11 111152004 111152055 -37631417 + (CATATA)n Simple_repeat Simple_repeat 4 56 0 456 252 128 52 chr11 111152129 111152379 -37631093 - L2 LINE L2 0 3313 3045 305 130 0 0 chr11 111152667 111152713 -37630759 + MER75 DNA T2_type 469 514 0 1608 134 4 4 chr11 111152758 111152997 -37630475 - AluSx SINE Alu -10 302 64 2034 133 3 0 chr11 111153411 111153704 -37629768 + AluSx SINE Alu 1 294 -18 21 0 0 0 chr11 111153730 111153751 -37629721 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr11 111154911 111154934 -37628538 + (TA)n Simple_repeat Simple_repeat 2 24 0 448 256 15 66 chr11 111155134 111155271 -37628201 + MER5B DNA MER1_type 3 132 -46 182 250 58 19 chr11 111155390 111155442 -37628030 - MIR SINE MIR -62 146 93 3277 52 5 7 chr11 111155582 111156004 -37627468 + L1PA5 LINE L1 5731 6151 -3 507 317 102 47 chr11 111156013 111156376 -37627096 - L2 LINE L2 -65 3207 2825 597 349 46 0 chr11 111156444 111156662 -37626810 - L2 LINE L2 -434 2880 2653 2075 105 21 0 chr11 111157711 111157996 -37625476 - AluSx SINE Alu -21 291 1 2017 142 0 19 chr11 111159337 111159654 -37623818 + AluJo SINE Alu 1 311 -1 886 172 0 0 chr11 111159686 111159831 -37623641 + AluSg/x SINE Alu 167 311 -1 936 164 40 51 chr11 111159875 111160052 -37623420 + AluJo SINE Alu 1 175 -137 318 238 0 0 chr11 111160370 111160433 -37623039 - L2 LINE L2 -1 3312 3250 2073 154 0 3 chr11 111161015 111161327 -37622145 + AluSx SINE Alu 1 311 -1 748 229 88 10 chr11 111161458 111161663 -37621809 + MIR SINE MIR 2 222 -40 759 151 8 0 chr11 111161694 111161834 -37621638 - FLAM_A SINE Alu 0 144 4 21 36 0 0 chr11 111161837 111161865 -37621607 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 111162288 111162309 -37621163 + AT_rich Low_complexity Low_complexity 1 21 0 1550 185 35 21 chr11 111162366 111162653 -37620819 + AluJo SINE Alu 1 291 -21 615 202 97 0 chr11 111163514 111163628 -37619844 + FLAM_A SINE Alu 1 125 -8 3012 156 43 10 chr11 111164383 111164986 -37618486 - MER39 LTR ERV1 0 707 85 217 236 112 45 chr11 111165453 111165542 -37617930 - MIR SINE MIR -1 261 167 751 184 0 29 chr11 111165836 111165972 -37617500 + FLAM_C SINE Alu 1 132 -1 2226 98 0 3 chr11 111166101 111166416 -37617056 + AluSp SINE Alu 1 314 0 741 333 128 7 chr11 111166539 111166983 -37616489 + L2 LINE L2 2816 3313 0 2042 136 14 0 chr11 111167293 111167588 -37615884 - AluSx SINE Alu -9 303 5 266 281 56 35 chr11 111171563 111171671 -37611801 - MIR SINE MIR -68 140 36 3504 52 5 7 chr11 111171754 111172176 -37611296 + L1PA5 LINE L1 5731 6151 -3 487 317 102 47 chr11 111172185 111172548 -37610924 - L2 LINE L2 -65 3207 2825 580 349 46 0 chr11 111172616 111172834 -37610638 - L2 LINE L2 -434 2880 2653 2073 105 21 0 chr11 111173883 111174168 -37609304 - AluSx SINE Alu -21 291 1 1998 142 0 19 chr11 111175508 111175825 -37607647 + AluJo SINE Alu 1 311 -1 873 172 0 0 chr11 111175857 111176002 -37607470 + AluSg/x SINE Alu 167 311 -1 921 164 40 51 chr11 111176046 111176223 -37607249 + AluJo SINE Alu 1 175 -137 314 211 0 0 chr11 111176541 111176598 -37606874 - L2 LINE L2 -1 3312 3256 2053 154 0 3 chr11 111177186 111177498 -37605974 + AluSx SINE Alu 1 311 -1 739 229 88 10 chr11 111177629 111177834 -37605638 + MIR SINE MIR 2 222 -40 805 151 8 0 chr11 111177865 111178005 -37605467 - FLAM_A SINE Alu 0 144 4 21 36 0 0 chr11 111178008 111178036 -37605436 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 111178460 111178481 -37604991 + AT_rich Low_complexity Low_complexity 1 21 0 1498 188 35 21 chr11 111178538 111178825 -37604647 + AluJo SINE Alu 1 291 -21 664 192 88 24 chr11 111179686 111179811 -37603661 + FLAM_A SINE Alu 1 133 0 3286 156 43 10 chr11 111180555 111181158 -37602314 - MER39 LTR ERV1 0 707 85 214 236 112 45 chr11 111181625 111181714 -37601758 - MIR SINE MIR -1 261 167 803 184 0 29 chr11 111182008 111182144 -37601328 + FLAM_C SINE Alu 1 132 -1 2230 98 0 3 chr11 111182273 111182588 -37600884 + AluSp SINE Alu 1 314 0 710 333 128 7 chr11 111182711 111183155 -37600317 + L2 LINE L2 2816 3313 0 2080 134 13 0 chr11 111183461 111183760 -37599712 - AluSx SINE Alu -9 303 1 244 170 38 0 chr11 111183871 111183924 -37599548 + MIR SINE MIR 70 124 -138 1359 213 25 123 chr11 111184120 111184569 -37598903 - LTR55 LTR ERV -8 540 49 411 21 0 0 chr11 111184569 111184617 -37598855 + (TA)n Simple_repeat Simple_repeat 1 48 0 2050 108 39 3 chr11 111184618 111184904 -37598568 - AluSx SINE Alu -16 296 1 1359 213 25 123 chr11 111184904 111185044 -37598428 - LTR55 LTR ERV -498 50 7 2074 154 114 28 chr11 111185557 111185986 -37597486 + MER31B LTR ERV1 1 466 0 1374 257 79 5 chr11 111186066 111186444 -37597028 + L1MC5 LINE L1 5377 5782 -2026 233 250 31 0 chr11 111186462 111186526 -37596946 - L1MC4 LINE L1 -1074 6968 6903 459 247 153 0 chr11 111186542 111186692 -37596780 + L1MC5 LINE L1 5764 5936 -1872 825 190 114 88 chr11 111187057 111187320 -37596152 + L1MC5 LINE L1 6692 6961 -1000 409 295 78 45 chr11 111187364 111187696 -37595776 - L1M4 LINE L1 -1164 4982 4640 24 67 0 0 chr11 111187863 111187908 -37595564 + AT_rich Low_complexity Low_complexity 1 45 0 2101 118 0 16 chr11 111190878 111191182 -37592290 - AluSx SINE Alu -13 299 1 267 365 74 55 chr11 111192886 111193250 -37590222 - L2 LINE L2 -43 3229 2859 278 234 42 120 chr11 111193255 111193422 -37590050 - MIR SINE MIR -23 239 86 780 123 1 54 chr11 111193731 111193746 -37589726 - L1MA8 LINE L1 -297 5865 5851 581 101 131 0 chr11 111193746 111193845 -37589627 - L1MA8 LINE L1 -17 6274 6163 1530 142 63 39 chr11 111193845 111194171 -37589301 - L1MA7 LINE L1 -2 6289 5951 780 123 1 54 chr11 111194171 111194306 -37589166 - L1MA8 LINE L1 -309 5853 5723 2093 126 81 11 chr11 111194306 111194654 -37588818 + THE1C LTR MaLR 1 372 -3 4595 88 55 82 chr11 111194657 111195433 -37588039 + THE1C-int LTR MaLR 1 755 -825 1302 126 5 25 chr11 111195953 111196151 -37587321 + AluSg/x SINE Alu 108 301 -11 792 268 47 95 chr11 111196538 111196723 -37586749 + L2 LINE L2 2952 3111 -202 2041 133 7 0 chr11 111196723 111197024 -37586448 - AluSx SINE Alu -7 305 3 792 268 47 95 chr11 111197024 111197218 -37586254 + L2 LINE L2 3111 3313 0 40666 67 16 5 chr11 111197299 111203377 -37580095 + L1PA6 LINE L1 11 6154 0 3968 57 0 4 chr11 111203379 111203852 -37579620 + L1PA5 LINE L1 5677 6147 -7 219 125 0 0 chr11 111204052 111204092 -37579380 + (CAAT)n Simple_repeat Simple_repeat 3 42 0 181 270 32 16 chr11 111205178 111205241 -37578231 + MER5C DNA MER1_type 23 86 -238 421 302 170 9 chr11 111205991 111206203 -37577269 + MIR SINE MIR 14 259 -3 248 167 37 0 chr11 111206351 111206405 -37577067 - L1ME4a LINE L1 -100 6021 5966 468 162 19 38 chr11 111206585 111206690 -37576782 + L1MB3 LINE L1 6080 6182 -1 449 235 295 6 chr11 111208430 111208613 -37574859 - MIR SINE MIR 0 262 27 660 232 166 12 chr11 111208625 111208884 -37574588 + L2 LINE L2 2347 2645 -669 521 233 53 13 chr11 111208915 111209065 -37574407 + MLT1K LTR MaLR 431 586 -2 194 275 225 50 chr11 111209403 111209523 -37573949 + MIR SINE MIR 120 260 -2 27 49 0 0 chr11 111211493 111211534 -37571938 + GC_rich Low_complexity Low_complexity 1 41 0 226 301 140 0 chr11 111212833 111212926 -37570546 + L2 LINE L2 2913 3018 -254 1542 188 30 67 chr11 111212962 111213045 -37570427 + MLT1A1 LTR MaLR 7 92 -273 1925 113 13 62 chr11 111213045 111213354 -37570118 + AluSx SINE Alu 5 298 -14 1542 188 30 67 chr11 111213354 111213643 -37569829 + MLT1A1 LTR MaLR 92 365 0 242 385 40 0 chr11 111213994 111214194 -37569278 + L2 LINE L2 2829 3036 -236 684 294 191 3 chr11 111214251 111214553 -37568919 + L2 LINE L2 2643 3003 -269 260 365 48 0 chr11 111214569 111214673 -37568799 + L2 LINE L2 3111 3219 -94 2061 137 3 0 chr11 111214743 111215042 -37568430 - AluSx SINE Alu -12 300 1 790 300 40 60 chr11 111215059 111215513 -37567959 + LTR67 LTR ERVL 107 551 -6 249 277 31 0 chr11 111215566 111215631 -37567841 - L2 LINE L2 -8 3305 3239 183 317 49 0 chr11 111215718 111215800 -37567672 + L2 LINE L2 3183 3268 -4 378 229 64 55 chr11 111215946 111216055 -37567417 - L2 LINE L2 0 3272 3163 1122 148 38 51 chr11 111216100 111216337 -37567135 + L1MB3 LINE L1 5950 6183 0 1703 168 12 40 chr11 111217092 111217413 -37566059 + AluJb SINE Alu 1 312 0 183 129 0 0 chr11 111218111 111218142 -37565330 + (CA)n Simple_repeat Simple_repeat 2 32 0 576 309 202 25 chr11 111218152 111218733 -37564739 - L2 LINE L2 -192 3121 2422 2544 188 31 0 chr11 111218973 111219425 -37564047 - MER50 LTR ERV1 -16 718 253 2344 83 7 3 chr11 111219426 111219726 -37563746 - AluSc SINE Alu -8 301 1 279 320 17 93 chr11 111221505 111221629 -37561843 + MIR3 SINE MIR 32 141 -67 3151 154 24 62 chr11 111221629 111221903 -37561569 + L1MB4 LINE L1 5529 5812 -368 2476 85 0 0 chr11 111221903 111222208 -37561264 + AluY SINE Alu 1 305 -6 3151 154 24 62 chr11 111222208 111222608 -37560864 + L1MB4 LINE L1 5812 6177 -3 279 320 17 93 chr11 111222608 111222655 -37560817 + MIR3 SINE MIR 141 190 -18 507 169 0 0 chr11 111222664 111222741 -37560731 - FLAM SINE Alu -17 126 50 2216 109 37 0 chr11 111222828 111223149 -37560323 + MER1B DNA MER1_type 2 334 -5 598 272 61 57 chr11 111223204 111223450 -37560022 + Charlie8 DNA MER1_type 9 255 -2162 261 253 67 99 chr11 111224039 111224292 -37559180 - L1ME4a LINE L1 -165 5956 5712 458 246 14 14 chr11 111224302 111224444 -37559028 - L1ME4a LINE L1 -2338 5470 5329 358 305 25 17 chr11 111225080 111225198 -37558274 - L3 LINE CR1 -545 1032 914 203 325 12 0 chr11 111225330 111225410 -37558062 - L2 LINE L2 -7 3306 3226 1259 247 174 11 chr11 111225581 111225961 -37557511 - MER70B LTR ERVL -133 445 4 23 0 0 0 chr11 111226084 111226107 -37557365 + AT_rich Low_complexity Low_complexity 1 23 0 228 306 0 0 chr11 111226834 111226896 -37556576 + MIR SINE MIR 97 158 -104 3173 100 128 135 chr11 111226896 111227535 -37555937 - MER41A LTR ERV1 0 635 1 2225 124 9 3 chr11 111227548 111227871 -37555601 - MER57B LTR ERV1 -109 325 1 3870 130 110 11 chr11 111228198 111228845 -37554627 + MER50 LTR ERV1 1 711 -23 1192 216 5 73 chr11 111229049 111229434 -37554038 + L1MA9 LINE L1 5914 6272 -40 279 0 0 0 chr11 111229735 111229777 -37553695 + (CTTG)n Simple_repeat Simple_repeat 1 73 0 279 0 0 0 chr11 111229777 111229808 -37553664 + (CTTG)n Simple_repeat Simple_repeat 2 32 0 1716 118 75 0 chr11 111229836 111230091 -37553381 - AluSp SINE Alu -39 274 1 604 234 175 28 chr11 111230091 111230335 -37553137 - MER5C DNA MER1_type -40 284 1 436 127 0 0 chr11 111230360 111230423 -37553049 - MER90 LTR ERV1 0 614 552 2880 102 22 2 chr11 111230430 111230842 -37552630 + LTR8A LTR ERV1 10 429 -298 947 144 21 77 chr11 111230832 111231026 -37552446 + LTR8A LTR ERV1 530 712 -15 * 4459 141 11 21 chr11 111231062 111231275 -37552197 - MER50 LTR ERV1 -12 722 508 5690 75 0 19 chr11 111231275 111231394 -37552078 - LTR8 LTR ERV1 0 691 571 2470 81 3 0 chr11 111231394 111231704 -37551768 - AluSp SINE Alu -2 311 1 5690 75 0 19 chr11 111231704 111232288 -37551184 - LTR8 LTR ERV1 -120 571 1 4459 141 11 21 chr11 111232288 111232803 -37550669 - MER50 LTR ERV1 -226 508 1 1871 192 124 7 chr11 111232823 111233276 -37550196 - MER90 LTR ERV1 -69 506 1 874 233 50 0 chr11 111233363 111233543 -37549929 - MER5A DNA MER1_type 0 189 1 2348 93 0 3 chr11 111233638 111233939 -37549533 + AluSx SINE Alu 1 300 -12 337 194 28 28 chr11 111235002 111235074 -37548398 + MIR3 SINE MIR 119 190 -18 265 234 287 31 chr11 111235118 111235379 -37548093 + L3 LINE CR1 1037 1364 -213 544 193 156 0 chr11 111236773 111236882 -37546590 - FLAM_A SINE Alu -3 130 5 2813 173 120 23 chr11 111237059 111237626 -37545846 - LTR26E LTR ERV1 0 622 1 1093 189 132 61 chr11 111237959 111238367 -37545105 + LTR56 LTR ERV1 9 445 0 336 321 0 0 chr11 111239823 111239935 -37543537 + MER34-int LTR ERV1 4451 4562 -3864 225 0 0 0 chr11 111240241 111240266 -37543206 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 979 141 0 0 chr11 111240668 111240810 -37542662 + AluSq/x SINE Alu 1 142 -170 1776 152 18 0 chr11 111240813 111241089 -37542383 + AluSx SINE Alu 11 291 -21 1378 100 223 4 chr11 111241364 111241593 -37541879 + AluSx SINE Alu 1 279 -33 225 65 0 0 chr11 111241595 111241626 -37541846 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1687 162 55 10 chr11 111242683 111242973 -37540499 + AluJb SINE Alu 3 305 -7 410 143 0 0 chr11 111243937 111243993 -37539479 + FRAM SINE Alu 62 117 -59 346 271 7 60 chr11 111244165 111244316 -37539156 + MER34-int LTR ERV1 6124 6266 -65 3301 143 22 26 chr11 111244388 111244932 -37538540 + MER34 LTR ERV1 1 542 0 205 238 122 93 chr11 111245063 111245235 -37538237 - L2 LINE L2 0 3313 3137 2161 166 89 17 chr11 111245313 111245810 -37537662 + LTR36 LTR ERV1 1 611 0 251 273 22 79 chr11 111245811 111245950 -37537522 - L2 LINE L2 -214 3058 2928 339 268 107 48 chr11 111246264 111246432 -37537040 - MER115 DNA AcHobo -463 230 53 713 237 74 5 chr11 111246439 111246629 -37536843 - MER58C DNA MER1_type -2 213 11 288 300 140 19 chr11 111246660 111247077 -37536395 - L2 LINE L2 -567 2747 2224 313 326 37 7 chr11 111248533 111248668 -37534804 - MIR SINE MIR -56 206 68 369 222 33 0 chr11 111248706 111248796 -37534676 + MER94 DNA DNA 13 105 -29 1549 114 9 0 chr11 111248891 111249102 -37534370 + AluSg/x SINE Alu 85 297 -15 1020 279 90 56 chr11 111249103 111250054 -37533418 + L1M4 LINE L1 3621 4604 -1542 285 255 29 108 chr11 111250301 111250505 -37532967 + LTR67 LTR ERVL 357 544 -13 527 301 171 10 chr11 111250579 111250772 -37532700 - MER58A DNA MER1_type 0 224 1 245 244 96 30 chr11 111250792 111250927 -37532545 + L1M4 LINE L1 4693 4836 -1310 1749 176 31 0 chr11 111251063 111251353 -37532119 + AluJb SINE Alu 1 299 -13 1963 96 6 73 chr11 111251910 111252223 -37531249 - AluSx SINE Alu -18 294 3 231 239 45 15 chr11 111252298 111252365 -37531107 + MIR SINE MIR 122 190 -72 235 267 0 17 chr11 111252376 111252436 -37531036 + MLT1H1 LTR MaLR 4 62 -493 253 268 171 0 chr11 111252449 111252531 -37530941 - L2 LINE L2 -6 3307 3212 247 139 0 0 chr11 111252896 111252939 -37530533 - Alu SINE Alu -1 301 259 1010 155 26 7 chr11 111252939 111253094 -37530378 - AluSx SINE Alu -154 158 1 221 269 39 0 chr11 111253094 111253146 -37530326 - L2 LINE L2 -10 3303 3250 634 276 23 0 chr11 111254278 111254452 -37529020 + MLT1G LTR MaLR 1 178 -412 663 210 214 16 chr11 111254461 111254718 -37528754 + MLT1G LTR MaLR 280 587 -3 609 262 98 16 chr11 111254727 111254910 -37528562 - LTR16B LTR ERVL -2 462 265 2386 81 3 3 chr11 111255095 111255402 -37528070 + AluSp SINE Alu 2 308 -5 2044 111 3 36 chr11 111255484 111255790 -37527682 - AluSx SINE Alu -16 296 1 204 343 123 34 chr11 111255794 111255940 -37527532 + L2 LINE L2 3112 3270 -2 2186 116 0 26 chr11 111256694 111257004 -37526468 - AluSq SINE Alu -10 303 2 540 265 72 12 chr11 111257031 111257197 -37526275 - MLT1J LTR MaLR -314 197 22 233 149 15 90 chr11 111257928 111257995 -37525477 - MLT1B LTR MaLR -45 345 284 * 369 304 40 0 chr11 111257976 111258124 -37525348 + MLT1J LTR MaLR 322 475 -36 226 264 28 28 chr11 111258214 111258286 -37525186 - MLT1J LTR MaLR -378 133 62 225 0 0 0 chr11 111258290 111258315 -37525157 + (A)n Simple_repeat Simple_repeat 1 25 0 343 91 0 0 chr11 111258403 111258447 -37525025 - MSTD LTR MaLR 0 396 353 1278 131 5 25 chr11 111258820 111259018 -37524454 - AluSg/x SINE Alu -11 299 106 699 121 0 48 chr11 111259539 111259663 -37523809 - THE1-int LTR MaLR -825 755 638 261 295 0 0 chr11 111259765 111259826 -37523646 + Charlie8 DNA MER1_type 112 172 -2245 250 260 10 42 chr11 111260341 111260437 -37523035 - L1ME4a LINE L1 -69 6052 5960 1115 145 0 42 chr11 111261683 111261876 -37521596 - AluSq SINE Alu -10 303 119 463 187 0 0 chr11 111262371 111262446 -37521026 + AluJ/FLAM SINE Alu 2 76 -236 937 150 4 99 chr11 111262604 111262649 -37520823 + AluJb SINE Alu 93 141 -171 1709 178 0 0 chr11 111262649 111262935 -37520537 + AluSx SINE Alu 1 286 -26 937 150 4 99 chr11 111262935 111262947 -37520525 + AluJb SINE Alu 141 153 -159 1048 26 40 0 chr11 111262947 111263098 -37520374 + (TAGA)n Simple_repeat Simple_repeat 2 158 0 937 150 4 99 chr11 111263098 111263272 -37520200 + AluJb SINE Alu 153 303 -9 337 194 28 28 chr11 111263973 111264045 -37519427 - MIR3 SINE MIR -18 190 119 2300 81 7 7 chr11 111265108 111265405 -37518067 - AluSc SINE Alu -12 297 1 219 197 0 82 chr11 111267183 111267244 -37516228 + MIR SINE MIR 32 87 -121 1037 150 22 104 chr11 111267293 111267581 -37515891 + L1M3 LINE L1 5513 5779 -401 2009 141 7 0 chr11 111267581 111267878 -37515594 + AluY SINE Alu 1 299 -12 787 240 82 46 chr11 111268038 111268332 -37515140 - Charlie2 DNA MER1_type -666 2196 1887 746 219 21 21 chr11 111268332 111268519 -37514953 + MER53 DNA DNA 3 189 0 787 240 82 46 chr11 111268519 111268553 -37514919 - Charlie2 DNA MER1_type -975 1887 1856 * 949 257 39 54 chr11 111268545 111268876 -37514596 - Charlie2 DNA MER1_type -2533 329 4 2054 141 0 3 chr11 111268881 111269194 -37514278 + AluSx SINE Alu 1 312 0 276 266 75 0 chr11 111269356 111269450 -37514022 + L2 LINE L2 3170 3270 -2 562 115 0 0 chr11 111269614 111269692 -37513780 - U6 snRNA snRNA -29 78 1 7367 34 20 0 chr11 111469877 111471381 -37312091 - L1PA4 LINE L1 -2 6153 4631 5356 164 41 22 chr11 111471383 111473162 -37310310 - L1PA15 LINE L1 -232 5933 4127 244 211 0 35 chr11 111473558 111473615 -37309857 + MER97b DNA MER1_type? 123 177 -876 978 136 7 0 chr11 111474467 111474607 -37308865 + AluSc SINE Alu 1 141 -168 226 206 79 16 chr11 111475400 111475463 -37308009 - MER91B DNA MER1_type -95 95 29 1335 242 75 53 chr11 111476319 111476811 -37306661 - MLT1D LTR MaLR -2 503 1 317 67 0 0 chr11 111476871 111476916 -37306556 - MADE1 DNA Mariner -1 79 35 769 272 105 62 chr11 111477280 111477813 -37305659 + LTR67 LTR ERVL 2 557 0 657 253 56 15 chr11 111477840 111478109 -37305363 + HAL1 LINE L1 1113 1392 -1115 666 253 247 6 chr11 111478113 111478245 -37305227 + HAL1 LINE L1 1451 1550 -957 234 0 0 0 chr11 111478245 111478271 -37305201 + (CAAT)n Simple_repeat Simple_repeat 2 27 0 666 253 247 6 chr11 111478271 111478490 -37304982 + HAL1 LINE L1 1550 1887 -620 1170 70 0 0 chr11 111478721 111478864 -37304608 + AluSp/q SINE Alu 169 311 -2 258 235 223 28 chr11 111478871 111479122 -37304350 + HAL1 LINE L1 2061 2360 -147 429 263 58 15 chr11 111479629 111479766 -37303706 - MIR SINE MIR 0 262 120 1819 105 16 4 chr11 111480058 111480315 -37303157 - AluSp SINE Alu -53 260 1 180 274 132 52 chr11 111480684 111480896 -37302576 + L2 LINE L2 2734 2962 -352 197 178 22 0 chr11 111481202 111481247 -37302225 + GA-rich Low_complexity Low_complexity 3 48 0 697 249 40 0 chr11 111481564 111481741 -37301731 - MIR SINE MIR -1 261 78 21 0 0 0 chr11 111482284 111482305 -37301167 + AT_rich Low_complexity Low_complexity 1 21 0 956 251 30 24 chr11 111482990 111483128 -37300344 + LTR16A LTR ERVL 114 250 -200 1811 142 96 9 chr11 111483128 111483473 -37299999 + THE1C LTR MaLR 1 375 0 956 251 30 24 chr11 111483473 111483669 -37299803 + LTR16A LTR ERVL 250 450 0 386 338 119 19 chr11 111484003 111484470 -37299002 - L2 LINE L2 -237 3035 2508 44 56 0 0 chr11 111484507 111484579 -37298893 + AT_rich Low_complexity Low_complexity 1 72 0 874 245 14 5 chr11 111484709 111484925 -37298547 + L1MC4a LINE L1 6649 6866 -942 384 193 161 0 chr11 111484967 111485128 -37298344 - Charlie1 DNA MER1_type -84 2677 2491 1909 233 72 70 chr11 111485785 111486292 -37297180 + L1MC4a LINE L1 6929 7434 -374 2182 94 31 0 chr11 111486292 111486578 -37296894 - AluSx SINE Alu -17 295 1 1909 233 72 70 chr11 111486578 111486782 -37296690 + L1MC4a LINE L1 7434 7644 -164 1622 208 94 6 chr11 111486782 111487263 -37296209 - Charlie1b DNA MER1_type 0 523 1 1909 233 72 70 chr11 111487263 111487375 -37296097 + L1MC4a LINE L1 7644 7754 -54 785 178 35 92 chr11 111487486 111487801 -37295671 - AluJb SINE Alu -1 301 5 25 51 0 0 chr11 111487816 111487855 -37295617 + AT_rich Low_complexity Low_complexity 1 39 0 2194 124 0 0 chr11 111487855 111488153 -37295319 - AluSx SINE Alu -14 298 1 1983 145 14 0 chr11 111488156 111488446 -37295026 - AluSx SINE Alu -18 294 1 344 225 25 50 chr11 111488477 111488507 -37294965 + L1ME1 LINE L1 5362 5391 -773 2101 107 3 7 chr11 111488507 111488805 -37294667 - AluSc SINE Alu -11 298 2 344 225 25 50 chr11 111488805 111488894 -37294578 + L1ME1 LINE L1 5391 5478 -686 21 36 0 0 chr11 111488996 111489024 -37294448 + AT_rich Low_complexity Low_complexity 1 28 0 1740 130 0 4 chr11 111489045 111489292 -37294180 + AluSx SINE Alu 1 246 -66 2655 136 2 14 chr11 111489297 111489730 -37293742 - MER61E LTR ERV1 -133 436 9 2228 221 50 1 chr11 111489733 111490299 -37293173 + L1ME1 LINE L1 5573 6177 -1 400 313 107 43 chr11 111491029 111491262 -37292210 + MIR SINE MIR 15 262 0 716 147 0 0 chr11 111491952 111492061 -37291411 - MER72 LTR ERV1 -28 694 586 1995 158 27 14 chr11 111492309 111492677 -37290795 + THE1C LTR MaLR 3 375 0 28 0 0 0 chr11 111493630 111493658 -37289814 + AT_rich Low_complexity Low_complexity 1 28 0 497 340 30 20 chr11 111493724 111493865 -37289607 + MIR SINE MIR 49 194 -68 4053 130 38 56 chr11 111493865 111494665 -37288807 + LTR1 LTR ERV1 1 785 0 497 340 30 20 chr11 111494665 111494720 -37288752 + MIR SINE MIR 194 247 -15 * 904 193 64 36 chr11 111494715 111494964 -37288508 - MIR SINE MIR 0 262 7 358 357 35 14 chr11 111496093 111496236 -37287236 - L2 LINE L2 -5 3308 3163 433 337 59 0 chr11 111496775 111496944 -37286528 - MIR SINE MIR -44 218 40 343 291 55 0 chr11 111497079 111497189 -37286283 + L3 LINE CR1 1316 1431 -146 894 180 6 14 chr11 111497790 111498147 -37285325 + (TATATG)n Simple_repeat Simple_repeat 1 353 0 259 225 28 0 chr11 111498309 111498380 -37285092 - L1MD1 LINE L1 -10 6232 6160 369 310 184 0 chr11 111498702 111498876 -37284596 - MIR SINE MIR -11 251 46 351 44 0 0 chr11 111499009 111499054 -37284418 + (TG)n Simple_repeat Simple_repeat 1 45 0 21 36 0 0 chr11 111499582 111499610 -37283862 + AT_rich Low_complexity Low_complexity 1 28 0 2433 70 0 10 chr11 111499764 111500076 -37283396 - AluY SINE Alu -2 309 1 220 305 0 17 chr11 111501086 111501145 -37282327 - L2 LINE L2 -2 3270 3213 686 237 50 15 chr11 111501147 111501345 -37282127 - L2 LINE L2 0 3313 3109 1333 280 202 4 chr11 111501678 111502193 -37281279 - L2 LINE L2 -567 2747 2131 2375 67 40 0 chr11 111502468 111502767 -37280705 + AluYa5 SINE Alu 1 311 0 276 284 123 37 chr11 111503489 111503651 -37279821 - MIR SINE MIR -3 259 84 1905 123 3 59 chr11 111504245 111504569 -37278903 + AluSx SINE Alu 1 306 -6 2450 109 59 43 chr11 111505589 111506010 -37277462 + MSTA LTR MaLR 1 428 0 484 237 39 70 chr11 111506236 111506392 -37277080 - MER5A DNA MER1_type 0 189 39 658 189 209 0 chr11 111506434 111506587 -37276885 - MER5A DNA MER1_type -3 186 2 1836 82 0 4 chr11 111507118 111507349 -37276123 - AluSg/x SINE Alu -5 307 78 371 280 189 8 chr11 111508059 111508191 -37275281 - MER5A DNA MER1_type -1 188 33 546 126 0 0 chr11 111508479 111508566 -37274906 + L1PBa LINE L1 3 89 -6774 10427 107 131 1 chr11 111508666 111510454 -37273018 + L1PBa LINE L1 937 2958 -3905 10167 218 35 43 chr11 111510451 111511613 -37271859 + L1PA15 LINE L1 1336 2506 -4291 * 1644 196 10 3 chr11 111511613 111511914 -37271558 + AluJb SINE Alu 1 303 -9 10167 218 35 43 chr11 111511914 111514679 -37268793 + L1PA15 LINE L1 2506 5261 -1536 5022 148 19 8 chr11 111514687 111515715 -37267757 + L1PA15 LINE L1 5772 6810 -6 2410 157 73 5 chr11 111515715 111516151 -37267321 + L1PB4 LINE L1 5675 6143 -13 23 0 0 0 chr11 111516151 111516174 -37267298 + AT_rich Low_complexity Low_complexity 1 23 0 2279 100 0 13 chr11 111516319 111516620 -37266852 - AluSg SINE Alu -13 297 1 2067 112 4 0 chr11 111516628 111516944 -37266528 - AluSc SINE Alu 0 319 3 21 0 0 0 chr11 111516944 111516965 -37266507 + AT_rich Low_complexity Low_complexity 1 21 0 760 202 0 0 chr11 111516965 111517094 -37266378 - FLAM_C SINE Alu -14 129 1 728 256 35 10 chr11 111517096 111517385 -37266087 - L1M4 LINE L1 -945 5201 4906 184 263 197 73 chr11 111518935 111519072 -37264400 + MER5A DNA MER1_type 36 189 0 2001 150 0 7 chr11 111519930 111520237 -37263235 + AluJb SINE Alu 1 305 -7 435 87 29 0 chr11 111520776 111520845 -37262627 + L1MA6 LINE L1 6224 6294 -6 540 158 91 30 chr11 111520937 111521102 -37262370 - MER53 DNA DNA -13 176 2 186 318 36 45 chr11 111521948 111522058 -37261414 - L3 LINE CR1 -10 1567 1459 560 233 73 53 chr11 111522314 111522520 -37260952 + MER63A DNA MER1_type 1 210 0 3394 106 52 46 chr11 111523428 111523944 -37259528 - Tigger3b DNA MER2_type -1798 1230 708 1781 149 24 14 chr11 111523944 111524233 -37259239 - AluJo SINE Alu -20 292 1 3394 106 52 46 chr11 111524233 111524327 -37259145 - Tigger3b DNA MER2_type -2320 708 616 2731 130 53 35 chr11 111524327 111524818 -37258654 - Tigger3b DNA MER2_type -730 501 2 257 351 88 50 chr11 111524956 111525304 -37258168 + L2 LINE L2 2715 3075 -197 1780 168 0 3 chr11 111525613 111525934 -37257538 + AluSx SINE Alu 1 320 0 208 405 0 0 chr11 111526190 111526279 -37257193 + L2 LINE L2 2773 2861 -453 262 357 48 8 chr11 111526499 111526625 -37256847 + L2 LINE L2 3136 3266 -6 236 307 59 10 chr11 111526626 111526727 -37256745 - L2 LINE L2 -5 3308 3203 1073 0 8 0 chr11 111526842 111526962 -37256510 - AluYa5/8 SINE Alu -189 121 1 2227 104 7 0 chr11 111527053 111527341 -37256131 - AluSq SINE Alu -23 290 1 182 273 65 86 chr11 111528352 111528491 -37254981 + L2 LINE L2 3116 3251 -62 1317 181 7 43 chr11 111528637 111528914 -37254558 - AluJo SINE Alu -45 267 1 304 277 134 9 chr11 111529128 111529240 -37254232 + L3 LINE CR1 1445 1570 -7 2472 191 43 39 chr11 111529617 111530176 -37253296 - MER68 LTR ERV1 0 562 2 2489 185 23 26 chr11 111530305 111531127 -37252345 - L1M2 LINE L1 -722 5590 4766 1924 168 0 19 chr11 111531127 111531436 -37252036 - AluJb SINE Alu -8 304 2 2489 185 23 26 chr11 111531436 111531543 -37251929 - L1M2 LINE L1 -1546 4766 4660 2626 26 7 3 chr11 111533615 111533925 -37249547 + AluY SINE Alu 1 311 0 1656 110 0 0 chr11 111534026 111534244 -37249228 - AluSc SINE Alu -7 302 85 324 179 12 60 chr11 111534682 111534766 -37248706 - MLT1H1 LTR MaLR -185 370 291 249 393 21 28 chr11 111535826 111535971 -37247501 - MIR3 SINE MIR -39 169 26 1871 146 11 0 chr11 111536865 111537181 -37246291 + AluY SINE Alu 1 319 0 208 405 0 0 chr11 111537438 111537527 -37245945 + L2 LINE L2 2773 2861 -453 262 357 48 8 chr11 111537747 111537873 -37245599 + L2 LINE L2 3136 3266 -6 209 304 59 20 chr11 111537874 111537976 -37245496 - L2 LINE L2 -5 3308 3203 270 291 58 66 chr11 111538115 111538369 -37245103 - MIR3 SINE MIR -10 252 4 261 346 75 41 chr11 111539954 111540220 -37243252 + L2 LINE L2 2998 3272 0 189 282 87 6 chr11 111540950 111541065 -37242407 - MIR SINE MIR -50 212 84 2209 101 0 7 chr11 111541204 111541501 -37241971 - AluSx SINE Alu -17 295 1 362 300 106 24 chr11 111541978 111542148 -37241324 + MIR SINE MIR 79 262 0 266 272 12 12 chr11 111542555 111542636 -37240836 + GA-rich Low_complexity Low_complexity 4 84 0 180 0 0 0 chr11 111543718 111543738 -37239734 + (T)n Simple_repeat Simple_repeat 1 20 0 1806 267 131 37 chr11 111544990 111545340 -37238132 - HAL1 LINE L1 -39 2468 2152 2349 108 0 0 chr11 111545340 111545647 -37237825 - AluSx SINE Alu -5 307 1 1806 267 131 37 chr11 111545647 111546459 -37237013 - HAL1 LINE L1 -355 2152 1197 310 232 84 21 chr11 111546476 111546571 -37236901 - HAL1 LINE L1 -1373 1134 1034 268 113 14 70 chr11 111546640 111546711 -37236761 + (TAAA)n Simple_repeat Simple_repeat 1 67 0 28 71 0 0 chr11 111546727 111546783 -37236689 + AT_rich Low_complexity Low_complexity 1 56 0 1571 171 7 33 chr11 111546797 111547072 -37236400 - AluJo SINE Alu -44 268 1 346 318 13 20 chr11 111547172 111547323 -37236149 - HAL1 LINE L1 -1611 896 747 872 247 89 35 chr11 111547354 111547723 -37235749 - MLT1J LTR MaLR 0 511 123 227 276 0 40 chr11 111547850 111547926 -37235546 - HAL1 LINE L1 -1792 715 643 692 323 41 21 chr11 111548175 111548513 -37234959 + LTR16C LTR ERVL 147 491 0 1684 169 26 0 chr11 111548553 111548856 -37234616 + AluJo SINE Alu 6 315 0 196 242 0 106 chr11 111549312 111549378 -37234094 + L2 LINE L2 3214 3272 0 1761 199 53 21 chr11 111550270 111550706 -37232766 - MLT1C LTR MaLR -12 455 6 729 167 0 0 chr11 111551447 111551561 -37231911 + FLAM_C SINE Alu 3 116 -27 23 33 0 0 chr11 111551768 111551798 -37231674 + AT_rich Low_complexity Low_complexity 1 30 0 328 353 53 0 chr11 111552922 111553055 -37230417 - MIR3 SINE MIR -30 178 39 198 0 0 0 chr11 111554293 111554315 -37229157 + (A)n Simple_repeat Simple_repeat 1 22 0 278 174 29 0 chr11 111554991 111555060 -37228412 + (CATTC)n Simple_repeat Simple_repeat 2 72 0 290 336 19 63 chr11 111555374 111555646 -37227826 - L1ME LINE L1 -281 5883 5624 2080 131 0 24 chr11 111555690 111555987 -37227485 + AluSx SINE Alu 1 290 -22 220 291 18 0 chr11 111556684 111556739 -37226733 - MIR3 SINE MIR -47 161 106 323 294 66 41 chr11 111557301 111557738 -37225734 - L1ME LINE L1 -1534 4612 4148 783 172 0 8 chr11 111557738 111557872 -37225600 - FLAM_C SINE Alu 0 133 1 323 294 66 41 chr11 111557872 111557957 -37225515 - L1ME LINE L1 -1998 4148 4067 302 274 8 48 chr11 111558012 111558136 -37225336 - L1ME LINE L1 -2532 3614 3496 1119 217 160 70 chr11 111558216 111558728 -37224744 - L1ME2 LINE L1 -10 6154 5597 613 215 72 46 chr11 111558744 111559016 -37224456 - L1ME2 LINE L1 -628 5534 5254 2379 197 44 6 chr11 111559016 111559493 -37223979 + LTR42 LTR ERVL 1 495 0 613 215 72 46 chr11 111559493 111559510 -37223962 - L1ME2 LINE L1 -908 5254 5239 4790 158 31 7 chr11 111560006 111560949 -37222523 + L1 LINE L1 4010 4974 -1172 * 10839 176 21 38 chr11 111560940 111563501 -37219971 - L1 LINE L1 -1253 6312 3795 * 40465 35 23 1 chr11 111563497 111569514 -37213958 - L1PA3 LINE L1 0 6155 1 10713 128 35 10 chr11 111569516 111571520 -37211952 - L1 LINE L1 -3757 3808 1756 2040 176 11 11 chr11 111571532 111571907 -37211565 - L1 LINE L1 -7176 389 15 1630 211 81 19 chr11 111571913 111572344 -37211128 + L1ME3A LINE L1 5709 6166 -4 1990 129 0 14 chr11 111572366 111572645 -37210827 - AluSx SINE Alu -37 275 1 438 313 0 0 chr11 111573526 111573657 -37209815 - MIR SINE MIR 0 262 132 1738 109 7 40 chr11 111574746 111575021 -37208451 - AluSx SINE Alu -9 303 38 847 204 26 16 chr11 111576549 111576740 -37206732 - AluJo SINE Alu -5 307 115 189 0 0 0 chr11 111576958 111576979 -37206493 + (A)n Simple_repeat Simple_repeat 1 21 0 369 330 24 72 chr11 111577124 111577402 -37206070 - L1ME3A LINE L1 -305 5865 5602 2069 131 0 24 chr11 111577422 111577719 -37205753 + AluSx SINE Alu 1 290 -22 215 291 18 0 chr11 111578414 111578469 -37205003 - MIR3 SINE MIR -47 161 106 396 316 76 0 chr11 111579039 111579210 -37204262 - MIR SINE MIR -71 191 8 362 349 50 45 chr11 111579589 111580010 -37203462 - L2 LINE L2 -339 2975 2553 1006 233 15 0 chr11 111580565 111580767 -37202705 - MER58A DNA MER1_type -19 205 1 570 270 56 22 chr11 111581507 111581685 -37201787 + MIR SINE MIR 79 262 0 265 270 120 10 chr11 111581901 111582001 -37201471 + L2 LINE L2 3162 3272 0 443 143 91 0 chr11 111582879 111582956 -37200516 + MER57A LTR ERV1 11 94 -309 1116 244 105 41 chr11 111582992 111583381 -37200091 - MSTB2 LTR MaLR 0 457 44 672 265 81 14 chr11 111583430 111583641 -37199831 + MIR SINE MIR 21 245 -17 580 317 45 12 chr11 111585099 111585342 -37198130 - MIR SINE MIR -1 261 11 276 286 16 0 chr11 111585883 111585946 -37197526 - L2 LINE L2 -3 3269 3206 213 269 0 0 chr11 111586023 111586075 -37197397 - L2 LINE L2 -215 3057 3006 213 221 147 21 chr11 111587055 111587150 -37196322 - L2 LINE L2 -239 3033 2927 480 308 54 22 chr11 111587304 111587489 -37195983 + MIR SINE MIR 16 206 -56 323 228 63 63 chr11 111587767 111587894 -37195578 - MIR SINE MIR -26 236 110 342 221 139 57 chr11 111587978 111588034 -37195438 + MER5B DNA MER1_type 7 57 -121 1691 159 75 38 chr11 111588034 111588380 -37195092 + MLT1A1 LTR MaLR 4 362 -3 342 221 139 57 chr11 111588380 111588481 -37194991 + MER5B DNA MER1_type 57 177 -1 212 401 29 22 chr11 111588882 111589019 -37194453 - L2 LINE L2 -611 2703 2566 2366 97 3 0 chr11 111589161 111589472 -37194000 + AluSp SINE Alu 1 312 -1 200 247 33 55 chr11 111590508 111590690 -37192782 + (CCCA)n Simple_repeat Simple_repeat 2 179 0 337 222 33 44 chr11 111590805 111590985 -37192487 + (CCCA)n Simple_repeat Simple_repeat 2 179 0 1897 232 55 29 chr11 111591309 111591801 -37191671 - MLT1D LTR MaLR 0 505 1 374 257 95 83 chr11 111591996 111592219 -37191253 - MIR3 SINE MIR -13 249 11 316 247 118 21 chr11 111592421 111592514 -37190958 + MIR SINE MIR 25 126 -82 * 512 282 35 23 chr11 111592503 111592677 -37190795 + MIR SINE MIR 44 219 -43 22 56 0 0 chr11 111592849 111592885 -37190587 + AT_rich Low_complexity Low_complexity 1 36 0 284 254 0 0 chr11 111592988 111593055 -37190417 - L1ME4a LINE L1 -94 6027 5961 465 325 89 41 chr11 111593628 111593991 -37189481 - L1ME4a LINE L1 -518 5648 5272 309 328 42 11 chr11 111594062 111594251 -37189221 - L1ME4a LINE L1 -981 5165 4971 423 373 70 12 chr11 111594252 111594595 -37188877 - MLT1I LTR MaLR 0 409 47 422 314 78 38 chr11 111594750 111595399 -37188073 - L1ME4a LINE L1 -1316 4830 4148 836 172 0 8 chr11 111595399 111595533 -37187939 - FLAM_C SINE Alu 0 133 1 422 314 78 38 chr11 111595533 111595597 -37187875 - L1ME4a LINE L1 -1998 4148 4088 25 31 0 0 chr11 111596797 111596829 -37186643 + GC_rich Low_complexity Low_complexity 1 32 0 180 0 0 0 chr11 111596829 111596849 -37186623 + (A)n Simple_repeat Simple_repeat 1 20 0 539 315 34 30 chr11 111597143 111597426 -37186046 - L2 LINE L2 -285 3028 2745 1066 177 33 79 chr11 111597855 111598124 -37185348 + MER33 DNA MER1_type 34 314 -2271 522 57 0 0 chr11 111598124 111598194 -37185278 + (TCTCC)n Simple_repeat Simple_repeat 5 74 0 1681 171 19 0 chr11 111598198 111598467 -37185005 - AluJo SINE Alu -38 274 1 1066 177 33 79 chr11 111598467 111598497 -37184975 + MER33 DNA MER1_type 317 324 0 227 233 30 120 chr11 111598543 111598676 -37184796 - L2 LINE L2 -9 3304 3184 1649 110 0 0 chr11 111598786 111599004 -37184468 - AluSc SINE Alu -7 302 85 351 210 32 57 chr11 111599441 111599574 -37183898 - MLT1H1 LTR MaLR -185 370 261 230 345 62 69 chr11 111600587 111600732 -37182740 - MIR3 SINE MIR -39 169 26 2060 100 10 17 chr11 111601626 111601925 -37181547 + AluY SINE Alu 1 297 -14 1531 162 15 11 chr11 111601934 111602206 -37181266 + L1MA4 LINE L1 6028 6300 0 208 300 0 0 chr11 111602218 111602268 -37181204 - MIR3 SINE MIR -48 160 111 203 195 24 0 chr11 111602517 111602558 -37180914 + (CAT)n Simple_repeat Simple_repeat 1 42 0 2091 100 35 32 chr11 111602892 111603203 -37180269 + AluSx SINE Alu 1 312 0 1145 187 118 8 chr11 111603521 111603767 -37179705 + AluJo SINE Alu 21 293 -19 348 186 72 52 chr11 111603853 111603950 -37179522 - MIR3 SINE MIR -3 205 107 225 108 0 0 chr11 111604076 111604113 -37179359 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2356 90 0 3 chr11 111604862 111605163 -37178309 - AluY SINE Alu -11 300 1 2015 144 6 6 chr11 111605840 111606152 -37177320 + AluJb SINE Alu 1 312 0 1936 174 0 0 chr11 111606269 111606579 -37176893 + AluSx SINE Alu 1 310 -2 2472 132 20 3 chr11 111606697 111607053 -37176419 - THE1B LTR MaLR -1 363 2 1724 183 0 0 chr11 111607053 111607332 -37176140 - AluJb SINE Alu -33 279 1 424 277 23 15 chr11 111607741 111607871 -37175601 + L2 LINE L2 3182 3312 -1 293 238 45 33 chr11 111608204 111608326 -37175146 + HAL1b LINE L1 1244 1345 -3 388 262 230 8 chr11 111608368 111608494 -37174978 - L2 LINE L2 -5 3267 3114 1053 149 12 0 chr11 111608596 111608764 -37174708 - AluJo SINE Alu -8 304 135 789 204 0 15 chr11 111609738 111609870 -37173602 - AluJo SINE Alu -172 130 1 737 202 8 0 chr11 111610143 111610272 -37173200 + MER5A DNA MER1_type 1 130 -59 1870 156 42 0 chr11 111610473 111610762 -37172710 + AluJb SINE Alu 5 305 -7 234 191 0 0 chr11 111610986 111611033 -37172439 + GA-rich Low_complexity Low_complexity 2 48 0 250 325 60 0 chr11 111611423 111611506 -37171966 + L2 LINE L2 2889 2976 -296 203 261 91 45 chr11 111611588 111611676 -37171796 - L2 LINE L2 -5 3267 3176 759 245 173 11 chr11 111612374 111612652 -37170820 + MER5C DNA MER1_type 2 324 0 350 317 77 80 chr11 111612695 111613020 -37170452 + L2 LINE L2 2949 3272 0 213 128 64 0 chr11 111613478 111613554 -37169918 + (TCTG)n Simple_repeat Simple_repeat 1 80 0 941 188 150 5 chr11 111613979 111614192 -37169280 - MLT1E LTR MaLR -2 591 348 353 158 66 26 chr11 111614550 111614626 -37168846 + MER21B LTR ERV1 12 90 -773 237 274 60 12 chr11 111614648 111614732 -37168740 + MER21B LTR ERV1 19 106 -757 * 719 209 171 0 chr11 111614730 111614888 -37168584 + MER21B LTR ERV1 19 203 -660 * 963 272 73 16 chr11 111614886 111615199 -37168273 + MER21B LTR ERV1 482 812 -51 180 326 116 12 chr11 111615227 111615313 -37168159 + MIR SINE MIR 26 120 -142 655 267 75 51 chr11 111615828 111616199 -37167273 + L1MC4a LINE L1 5674 6053 -1755 1078 286 98 19 chr11 111617841 111618219 -37165253 + MLT1I LTR MaLR 1 408 -1 720 329 104 46 chr11 111618228 111618621 -37164851 + L2 LINE L2 2130 2499 -814 1642 179 43 10 chr11 111618621 111618923 -37164549 + AluJb SINE Alu 1 312 0 720 329 104 46 chr11 111618923 111619632 -37163840 + L2 LINE L2 2499 3293 -20 215 307 53 0 chr11 111619895 111619970 -37163502 + MIR3 SINE MIR 125 203 -5 477 281 121 9 chr11 111620718 111620942 -37162530 - MIR SINE MIR -12 250 2 243 0 0 0 chr11 111621542 111621569 -37161903 + (CA)n Simple_repeat Simple_repeat 2 28 0 252 86 0 0 chr11 111622881 111622916 -37160556 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 195 379 15 38 chr11 111622992 111623124 -37160348 + L2 LINE L2 2203 2331 -983 801 298 56 9 chr11 111623790 111624474 -37158998 + L1M4 LINE L1 2833 3548 -2598 287 244 8 50 chr11 111624571 111624690 -37158782 - L1M4 LINE L1 -1465 4681 4568 21 0 0 0 chr11 111625282 111625303 -37158169 + AT_rich Low_complexity Low_complexity 1 21 0 233 189 19 19 chr11 111625603 111625656 -37157816 - L2 LINE L2 -74 3239 3187 21 0 0 0 chr11 111625761 111625782 -37157690 + AT_rich Low_complexity Low_complexity 1 21 0 829 119 45 0 chr11 111625792 111625926 -37157546 + L1PA13 LINE L1 6022 6161 -2 1457 141 153 4 chr11 111627027 111627282 -37156190 - AluSx SINE Alu -19 293 1 21 0 0 0 chr11 111627413 111627434 -37156038 + AT_rich Low_complexity Low_complexity 1 21 0 781 126 9 0 chr11 111627551 111627662 -37155810 - AluSg/x SINE Alu -29 283 172 1912 194 25 6 chr11 111628554 111628910 -37154562 + MLT1A1 LTR MaLR 3 365 0 5198 136 67 23 chr11 111631681 111631759 -37151713 + Tigger3b DNA MER2_type 1 74 -2954 2692 115 31 9 chr11 111631759 111632178 -37151294 + MSTA LTR MaLR 1 428 0 5198 136 67 23 chr11 111632178 111633145 -37150327 + Tigger3b DNA MER2_type 74 1092 -139 315 246 0 0 chr11 111633146 111633211 -37150261 + FLAM_A SINE Alu 1 65 -68 534 225 0 46 chr11 111633228 111633379 -37150093 + Tigger3b DNA MER2_type 1089 1232 0 183 226 75 19 chr11 111633402 111633455 -37150017 + MIR SINE MIR 124 179 -83 1171 81 0 6 chr11 111634103 111634277 -37149195 - L1P5 LINE L1 -411 5745 5573 2032 143 26 8 chr11 111634277 111634627 -37148845 + L1PB4 LINE L1 5795 6151 -5 2466 66 0 3 chr11 111634725 111635027 -37148445 - AluY SINE Alu -10 301 1 394 279 176 6 chr11 111635942 111636107 -37147365 - MIR SINE MIR -6 256 64 1026 269 129 61 chr11 111636368 111636973 -37146499 - ERVL LTR ERVL -3207 2557 1912 306 0 0 0 chr11 111637035 111637069 -37146403 + (TG)n Simple_repeat Simple_repeat 1 34 0 * 324 48 0 0 chr11 111637068 111637110 -37146362 + (GA)n Simple_repeat Simple_repeat 1 42 0 267 152 0 0 chr11 111637144 111637190 -37146282 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 183 80 0 0 chr11 111637278 111637303 -37146169 + (TATATG)n Simple_repeat Simple_repeat 2 26 0 329 181 0 133 chr11 111637304 111637409 -37146063 + L1MC4 LINE L1 6612 6702 -1340 480 386 39 27 chr11 111637449 111638071 -37145401 - ERVL LTR ERVL -3600 1396 768 1571 193 3 37 chr11 111638386 111638433 -37145039 - AluJo SINE Alu -26 286 239 2142 148 114 8 chr11 111638433 111638818 -37144654 + MSTA LTR MaLR 1 426 -2 1571 193 3 37 chr11 111638818 111639066 -37144406 - AluJo SINE Alu -73 239 1 549 209 194 7 chr11 111641337 111641476 -37141996 + MER5B DNA MER1_type 13 177 -1 1106 202 155 36 chr11 111642574 111642852 -37140620 + MER63B DNA MER1_type 2 340 -722 2136 142 3 0 chr11 111642852 111643163 -37140309 - AluSx SINE Alu 0 312 1 1106 202 155 36 chr11 111643163 111643271 -37140201 + MER63B DNA MER1_type 340 434 -2 180 337 50 10 chr11 111643381 111643482 -37139990 - MIR SINE MIR -74 134 30 307 254 83 65 chr11 111643607 111643776 -37139696 + MIR3 SINE MIR 18 189 -19 277 328 38 37 chr11 111644546 111644744 -37138728 + MIR3 SINE MIR 6 206 -56 2277 121 0 0 chr11 111645687 111645993 -37137479 - AluSg SINE Alu -4 306 1 1690 190 0 13 chr11 111648466 111648588 -37134884 + AluJb SINE Alu 1 123 -189 189 0 0 0 chr11 111648588 111648609 -37134863 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1690 190 0 13 chr11 111648609 111648786 -37134686 + AluJb SINE Alu 123 296 -16 198 207 0 0 chr11 111649034 111649092 -37134380 + (TTCA)n Simple_repeat Simple_repeat 1 58 0 204 254 16 0 chr11 111651457 111651520 -37131952 + (TAAA)n Simple_repeat Simple_repeat 1 64 0 1606 179 77 4 chr11 111651657 111651931 -37131541 - AluJo SINE Alu -18 294 1 1452 154 0 109 chr11 111652505 111652816 -37130656 - AluJo SINE Alu 0 312 36 1226 149 0 0 chr11 111652873 111653047 -37130425 - AluSg/x SINE Alu -5 305 132 373 293 30 73 chr11 111653108 111653272 -37130200 - MIR SINE MIR -47 215 59 180 315 108 57 chr11 111653798 111654223 -37129249 + L2 LINE L2 2038 2484 -830 * 745 236 104 14 chr11 111654130 111654350 -37129122 + MIR SINE MIR 23 262 0 3672 105 0 2 chr11 111654387 111655016 -37128456 + L1PB1 LINE L1 5168 5795 -356 240 75 60 53 chr11 111655016 111655149 -37128323 + (TA)n Simple_repeat Simple_repeat 2 135 0 2400 107 14 14 chr11 111655162 111655527 -37127945 + L1PB1 LINE L1 5786 6150 -1 2597 103 0 8 chr11 111658413 111658780 -37124692 + THE1B LTR MaLR 1 364 0 215 296 56 0 chr11 111660889 111660943 -37122529 - MIR SINE MIR -182 80 24 422 343 83 5 chr11 111661531 111661735 -37121737 + MIR SINE MIR 37 256 -6 256 314 29 0 chr11 111661739 111661809 -37121663 - MIR3 SINE MIR -21 187 116 250 200 33 33 chr11 111662920 111662980 -37120492 - L2 LINE L2 0 3272 3213 494 196 9 0 chr11 111663524 111663636 -37119836 + CT-rich Low_complexity Low_complexity 4 116 0 28769 106 10 18 chr11 111663637 111670124 -37113348 - L1PA7 LINE L1 -13 6456 8 229 219 0 31 chr11 111670606 111670670 -37112802 + CT-rich Low_complexity Low_complexity 2 63 0 334 357 27 11 chr11 111671044 111671229 -37112243 - L2 LINE L2 -345 2969 2782 614 316 94 57 chr11 111671246 111671597 -37111875 + L2 LINE L2 2909 3272 0 268 56 0 0 chr11 111671801 111671837 -37111635 - L1P3 LINE L1 -5346 1115 1080 466 84 53 53 chr11 111671844 111671939 -37111533 + THE1B LTR MaLR 163 257 -107 302 83 21 0 chr11 111671939 111671987 -37111485 - L1P3 LINE L1 -5388 1073 1025 201 132 0 0 chr11 111672222 111672260 -37111212 + (TA)n Simple_repeat Simple_repeat 2 39 0 2410 267 77 37 chr11 111672464 111673547 -37109925 + L2 LINE L2 2113 3245 -68 2235 114 54 20 chr11 111673547 111673899 -37109573 + THE1B LTR MaLR 1 364 0 2410 267 77 37 chr11 111673899 111673971 -37109501 + L2 LINE L2 3245 3313 0 2444 148 0 0 chr11 111674898 111675262 -37108210 - THE1B LTR MaLR 0 364 1 9778 102 46 41 chr11 111675262 111676523 -37106949 - THE1B-int LTR MaLR 0 1580 308 2254 99 10 0 chr11 111676523 111676817 -37106655 + AluY SINE Alu 1 297 -14 9778 102 46 41 chr11 111676817 111677127 -37106345 - THE1B-int LTR MaLR -1272 308 1 2519 135 0 0 chr11 111677127 111677491 -37105981 - THE1B LTR MaLR 0 364 1 577 282 96 5 chr11 111677527 111677715 -37105757 + MIR SINE MIR 8 212 -50 545 215 30 15 chr11 111678356 111678773 -37104699 + (TA)n Simple_repeat Simple_repeat 1 423 0 196 129 109 0 chr11 111678823 111678924 -37104548 + (TA)n Simple_repeat Simple_repeat 2 113 0 281 310 136 19 chr11 111680495 111680708 -37102764 + MLT1K LTR MaLR 345 582 -6 350 330 9 0 chr11 111680714 111680820 -37102652 + L2 LINE L2 1830 1936 -1378 245 183 24 79 chr11 111680979 111681143 -37102329 + T-rich Low_complexity Low_complexity 2 156 0 3157 132 58 42 chr11 111682312 111682708 -37100764 + MER6A DNA MER2_type 2 411 -454 2237 122 0 0 chr11 111682708 111683019 -37100453 - AluSx SINE Alu -1 311 1 3157 132 58 42 chr11 111683019 111683213 -37100259 + MER6A DNA MER2_type 411 601 -4 273 49 0 0 chr11 111683420 111683461 -37100011 - L1MA4A LINE L1 -2 6301 6261 229 264 33 33 chr11 111683824 111683915 -37099557 + L1MC/D LINE L1 5812 5902 -1906 571 316 57 45 chr11 111684199 111684639 -37098833 + L2 LINE L2 2160 2604 -710 383 367 13 19 chr11 111684775 111684933 -37098539 + L2 LINE L2 3116 3272 0 529 273 39 19 chr11 111686052 111686257 -37097215 - MIR SINE MIR -14 248 40 287 240 32 56 chr11 111687936 111688061 -37095411 - L2 LINE L2 -208 3064 2943 21 0 0 0 chr11 111691591 111691612 -37091860 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr11 111691726 111691764 -37091708 + AT_rich Low_complexity Low_complexity 1 38 0 219 88 0 0 chr11 111692116 111692150 -37091322 + (T)n Simple_repeat Simple_repeat 1 34 0 301 307 60 53 chr11 111692898 111693048 -37090424 + MIR3 SINE MIR 58 208 0 229 170 19 19 chr11 111694185 111694238 -37089234 + T-rich Low_complexity Low_complexity 3 55 0 271 303 115 33 chr11 111694635 111694757 -37088715 + L3 LINE CR1 1427 1558 -19 754 144 8 8 chr11 111694768 111694886 -37088586 - AluJb SINE Alu -194 118 1 432 301 29 15 chr11 111695416 111695552 -37087920 + L2 LINE L2 3174 3311 -2 263 209 30 15 chr11 111695920 111695987 -37087485 + GA-rich Low_complexity Low_complexity 3 70 0 336 115 26 26 chr11 111696482 111696560 -37086912 + GA-rich Low_complexity Low_complexity 4 81 0 189 74 0 0 chr11 111696560 111696587 -37086885 + (CCGG)n Simple_repeat Simple_repeat 2 28 0 249 57 0 0 chr11 111696597 111696632 -37086840 + (CACG)n Simple_repeat Simple_repeat 1 35 0 1630 178 41 7 chr11 111696699 111696992 -37086480 + AluJo SINE Alu 1 303 -9 228 139 0 0 chr11 111697107 111697143 -37086329 + U2 snRNA snRNA 1 36 -152 2271 118 30 28 chr11 111697372 111697735 -37085737 + THE1B LTR MaLR 1 364 0 259 188 80 58 chr11 111697777 111697915 -37085557 - L1ME4a LINE L1 -14 6107 5967 548 237 0 0 chr11 111698050 111698147 -37085325 - AluJ/FLAM SINE Alu -210 102 6 5726 114 14 2 chr11 111698152 111699019 -37084453 - L1MA3 LINE L1 -48 6257 5381 183 385 74 20 chr11 111700121 111700269 -37083203 - L2 LINE L2 -575 2739 2584 2724 151 66 39 chr11 111700452 111700996 -37082476 - MER89 LTR ERV1 0 559 1 246 222 0 74 chr11 111701534 111701615 -37081857 + L1MC4 LINE L1 6629 6703 -1339 210 179 30 15 chr11 111701748 111701815 -37081657 + (TA)n Simple_repeat Simple_repeat 1 68 0 2057 125 0 4 chr11 111701854 111702161 -37081311 - AluSx SINE Alu 0 310 5 221 221 15 0 chr11 111702164 111702232 -37081240 + (TA)n Simple_repeat Simple_repeat 1 69 0 417 322 129 6 chr11 111702256 111702427 -37081045 - MIR SINE MIR -6 256 65 414 317 42 18 chr11 111703251 111703418 -37080054 + MIR SINE MIR 11 181 -81 332 267 233 0 chr11 111703747 111703867 -37079605 - MIR SINE MIR -66 196 49 1853 99 4 0 chr11 111704696 111704938 -37078534 + AluSc SINE Alu 56 298 -11 542 229 76 25 chr11 111705256 111705413 -37078059 + L1M4 LINE L1 5 169 -6373 1081 246 24 24 chr11 111705425 111705713 -37077759 + L1M4 LINE L1 233 520 -6022 373 218 46 11 chr11 111705803 111705890 -37077582 + L1ME LINE L1 5707 5796 -366 247 304 20 20 chr11 111706291 111706409 -37077063 - MIR SINE MIR -42 166 49 2276 226 78 44 chr11 111706436 111706474 -37076998 - L1MEc LINE L1 -3726 2489 2454 601 251 62 22 chr11 111706474 111706653 -37076819 - MER5A DNA MER1_type 0 189 4 2276 226 78 44 chr11 111706653 111707593 -37075879 - L1MEc LINE L1 -3761 2454 1543 29 96 0 0 chr11 111707650 111707723 -37075749 + AT_rich Low_complexity Low_complexity 1 73 0 239 113 19 0 chr11 111707775 111707828 -37075644 + (TA)n Simple_repeat Simple_repeat 2 55 0 1499 160 57 0 chr11 111707829 111708073 -37075399 - AluJo SINE Alu -29 283 26 357 311 71 33 chr11 111708073 111708285 -37075187 - L1MEc LINE L1 -5679 717 498 1043 301 25 17 chr11 111708305 111708711 -37074761 - L1MEc LINE L1 -5951 445 37 473 220 162 0 chr11 111710135 111710308 -37073164 - LTR37A LTR ERV1 0 426 226 647 239 78 70 chr11 111710803 111711046 -37072426 + MIR SINE MIR 12 256 -6 2086 120 0 7 chr11 111711402 111711701 -37071771 + AluSx SINE Alu 3 299 -13 239 261 134 34 chr11 111712011 111712130 -37071342 - MIR SINE MIR -52 210 80 562 189 8 76 chr11 111713030 111713162 -37070310 + FLAM_C SINE Alu 9 131 -12 267 296 74 15 chr11 111716393 111716528 -37066944 + MIR SINE MIR 22 164 -98 275 197 0 45 chr11 111717461 111717527 -37065945 + MIR SINE MIR 126 188 -74 728 221 96 5 chr11 111717916 111718115 -37065357 - MER20 DNA MER1_type -2 217 1 289 250 69 69 chr11 111718857 111718973 -37064499 - MIR3 SINE MIR -50 158 43 2037 105 3 27 chr11 111719349 111719645 -37063827 + AluSx SINE Alu 1 289 -23 195 100 0 0 chr11 111719648 111719678 -37063794 + (CAA)n Simple_repeat Simple_repeat 2 31 0 238 298 168 50 chr11 111719766 111719927 -37063545 + MIR3 SINE MIR 14 193 -15 1189 191 114 4 chr11 111720714 111720960 -37062512 + AluJo SINE Alu 21 293 -19 358 186 72 52 chr11 111721046 111721143 -37062329 - MIR3 SINE MIR -3 205 107 225 108 0 0 chr11 111721269 111721306 -37062166 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2334 90 0 3 chr11 111722059 111722360 -37061112 - AluY SINE Alu -11 300 1 2029 154 0 0 chr11 111723037 111723349 -37060123 + AluJb SINE Alu 1 312 0 1904 171 0 0 chr11 111723466 111723776 -37059696 + AluJo SINE Alu 1 310 -2 813 134 8 15 chr11 111723984 111724118 -37059354 + FLAM_C SINE Alu 1 133 0 231 36 0 0 chr11 111724456 111724484 -37058988 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 470 218 137 47 chr11 111726144 111726355 -37057117 + MER106A DNA MER1_type 7 236 0 391 248 304 0 chr11 111726413 111726574 -37056898 - MIR SINE MIR -51 211 2 783 130 9 0 chr11 111727096 111727211 -37056261 + FLAM_A SINE Alu 10 125 -17 305 281 98 0 chr11 111727313 111727395 -37056077 + MIR3 SINE MIR 90 179 -29 514 312 59 10 chr11 111727944 111728146 -37055326 - MIR SINE MIR -10 252 41 308 237 92 0 chr11 111728613 111728689 -37054783 - L2 LINE L2 0 3272 3190 837 173 58 0 chr11 111728849 111728988 -37054484 - FRAM SINE Alu -18 158 12 2179 100 7 10 chr11 111729013 111729302 -37054170 - AluSx SINE Alu -24 288 1 1107 205 120 27 chr11 111729924 111730182 -37053290 + AluJo SINE Alu 1 282 -30 204 100 17 50 chr11 111730377 111730437 -37053035 + (TTAAA)n Simple_repeat Simple_repeat 3 60 0 249 203 0 0 chr11 111730754 111730813 -37052659 + A-rich Low_complexity Low_complexity 1 59 0 214 191 0 0 chr11 111730923 111730965 -37052507 + (TTA)n Simple_repeat Simple_repeat 3 44 0 2391 106 0 0 chr11 111731233 111731536 -37051936 - AluSx SINE Alu -9 303 1 553 203 0 16 chr11 111731548 111731676 -37051796 - MER33 DNA MER1_type -173 151 26 2156 119 3 22 chr11 111732011 111732329 -37051143 - AluSx SINE Alu 0 312 1 187 309 118 0 chr11 111732476 111732544 -37050928 + MIR SINE MIR 82 157 -105 * 756 235 134 0 chr11 111732537 111732754 -37050718 - MIR SINE MIR 0 262 17 283 226 0 0 chr11 111732762 111732815 -37050657 + L2 LINE L2 3201 3253 -19 261 0 0 0 chr11 111735516 111735545 -37047927 + (CA)n Simple_repeat Simple_repeat 2 30 0 180 0 0 0 chr11 111735544 111735564 -37047908 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 724 153 8 8 chr11 111736548 111736666 -37046806 + FLAM_C SINE Alu 1 118 -15 30 0 0 0 chr11 111736666 111736696 -37046776 + AT_rich Low_complexity Low_complexity 1 30 0 202 206 0 0 chr11 111736903 111736937 -37046535 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 288 77 0 0 chr11 111737064 111737103 -37046369 + (CA)n Simple_repeat Simple_repeat 2 40 0 2118 135 0 7 chr11 111737976 111738280 -37045192 - AluSx SINE Alu -10 302 1 1602 191 20 13 chr11 111738859 111738987 -37044485 + AluJo SINE Alu 3 129 -183 2005 123 0 0 chr11 111738987 111739256 -37044216 + AluSx SINE Alu 37 305 -7 1602 191 20 13 chr11 111739256 111739431 -37044041 + AluJo SINE Alu 129 308 -4 1041 187 0 0 chr11 111739544 111739726 -37043746 + AluJb SINE Alu 129 310 -2 1714 150 54 4 chr11 111740616 111740896 -37042576 + AluJb SINE Alu 1 294 -18 6524 41 4 1 chr11 111741333 111742381 -37041091 - L1P2 LINE L1 -571 5584 4535 5314 20 0 8 chr11 111742381 111743040 -37040432 + L1P2 LINE L1 3851 4504 -1642 258 328 84 53 chr11 111743166 111743297 -37040175 - MIR3 SINE MIR -36 172 38 354 195 0 0 chr11 111744225 111744302 -37039170 + GA-rich Low_complexity Low_complexity 4 80 0 216 0 0 0 chr11 111745315 111745339 -37038133 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 255 167 0 50 chr11 111745690 111745750 -37037722 + FLAM SINE Alu 73 124 -9 203 227 15 15 chr11 111745980 111746046 -37037426 + T-rich Low_complexity Low_complexity 1 66 0 1862 158 0 0 chr11 111746294 111746610 -37036862 + AluSx SINE Alu 5 320 0 21 71 0 0 chr11 111747939 111747981 -37035491 + AT_rich Low_complexity Low_complexity 1 42 0 484 281 68 26 chr11 111748175 111748367 -37035105 + MIR SINE MIR 48 247 -15 1034 141 16 5 chr11 111748682 111748867 -37034605 + LTR62 LTR ERVK 1 187 -532 1687 10 0 0 chr11 111748879 111749081 -37034391 + L1HS LINE L1 5953 6154 -1 2310 189 79 8 chr11 111749102 111749595 -37033877 + LTR62 LTR ERVK 189 716 -3 378 0 0 0 chr11 111750379 111750421 -37033051 + (TG)n Simple_repeat Simple_repeat 1 42 0 8095 91 13 7 chr11 111750733 111751956 -37031516 - L1PA7 LINE L1 -1725 4421 3192 6826 71 1 1 chr11 111751957 111753682 -37029790 + L1PA7 LINE L1 4424 6151 -3 268 247 10 52 chr11 111754027 111754124 -37029348 - MIR SINE MIR -59 203 111 1791 198 52 34 chr11 111754410 111754886 -37028586 - MER34B LTR ERV1 -72 493 9 419 35 0 17 chr11 111755116 111755174 -37028298 + (CTA)n Simple_repeat Simple_repeat 3 59 0 2104 128 3 0 chr11 111755226 111755515 -37027957 + AluSx SINE Alu 1 290 -22 1817 123 80 4 chr11 111755727 111756003 -37027469 + AluSx SINE Alu 6 302 -10 24 0 0 0 chr11 111756176 111756200 -37027272 + AT_rich Low_complexity Low_complexity 1 24 0 2341 71 3 23 chr11 111757268 111757577 -37025895 - AluY SINE Alu -8 303 1 456 139 13 0 chr11 111757714 111757793 -37025679 - MER116 DNA Mariner 0 80 1 245 328 102 0 chr11 111757831 111757959 -37025513 - MIR SINE MIR -30 232 92 29 0 0 0 chr11 111758632 111758661 -37024811 + AT_rich Low_complexity Low_complexity 1 29 0 1983 146 125 28 chr11 111759504 111759929 -37023543 - MLT1C LTR MaLR 0 467 2 1350 140 0 0 chr11 111760102 111760288 -37023184 + AluSx SINE Alu 1 186 -126 1917 182 68 31 chr11 111760885 111761342 -37022130 - L1MB5 LINE L1 0 6174 5701 1765 151 39 16 chr11 111761641 111761946 -37021526 - AluJb SINE Alu 0 312 1 193 328 140 6 chr11 111761967 111762138 -37021334 + L2 LINE L2 2709 2902 -412 181 328 216 9 chr11 111764425 111764541 -37018931 - L2 LINE L2 -12 3260 3121 238 325 13 53 chr11 111764561 111764712 -37018760 - L2 LINE L2 -581 2733 2589 193 343 95 9 chr11 111764720 111764825 -37018647 - L2 LINE L2 -1735 1579 1466 919 269 90 23 chr11 111765288 111765589 -37017883 - L2 LINE L2 -1 3312 2992 205 225 54 99 chr11 111765692 111765803 -37017669 + L2 LINE L2 2799 2904 -410 391 328 97 51 chr11 111765828 111766063 -37017409 + L2 LINE L2 2614 2837 -435 1804 144 174 11 chr11 111766063 111766430 -37017042 + MSTA LTR MaLR 1 427 -1 391 328 97 51 chr11 111766430 111766756 -37016716 + L2 LINE L2 2837 3209 -63 278 333 82 18 chr11 111767429 111767600 -37015872 + MIR SINE MIR 24 205 -57 490 275 120 0 chr11 111768464 111768606 -37014866 - MIR SINE MIR -7 255 97 345 269 255 14 chr11 111768736 111768881 -37014591 + MIR3 SINE MIR 17 196 -12 402 21 0 0 chr11 111769495 111769542 -37013930 + (TG)n Simple_repeat Simple_repeat 1 47 0 216 0 0 0 chr11 111769541 111769565 -37013907 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 216 333 240 21 chr11 111770128 111770320 -37013152 - MIR SINE MIR -7 255 22 1354 285 60 26 chr11 111770534 111771282 -37012190 + L2 LINE L2 2528 3308 -5 186 43 0 0 chr11 111771960 111771983 -37011489 + (GA)n Simple_repeat Simple_repeat 2 24 0 2322 59 3 3 chr11 111772230 111772519 -37010953 - AluY SINE Alu -22 289 1 285 370 35 6 chr11 111772580 111772753 -37010719 + L3 LINE CR1 243 420 -1157 214 380 62 23 chr11 111772881 111773010 -37010462 + L2 LINE L2 3139 3272 0 494 350 89 0 chr11 111773136 111773427 -37010045 + L3 LINE CR1 579 895 -682 371 186 97 48 chr11 111773452 111773486 -37009986 + Charlie4 DNA MER1_type 1818 1849 -112 2385 138 15 75 chr11 111773486 111773941 -37009531 + MSTC LTR MaLR 1 428 0 371 186 97 48 chr11 111773941 111774030 -37009442 + Charlie4 DNA MER1_type 1849 1947 -14 189 0 0 0 chr11 111774061 111774082 -37009390 + (A)n Simple_repeat Simple_repeat 1 21 0 3545 198 63 13 chr11 111774082 111775025 -37008447 - L1MB7 LINE L1 -5 6179 5191 279 314 77 65 chr11 111775110 111775279 -37008193 + L3 LINE CR1 1041 1211 -366 359 389 40 11 chr11 111775470 111775645 -37007827 + L3 LINE CR1 1389 1568 -9 1404 246 27 64 chr11 111775858 111776196 -37007276 - L1MC4a LINE L1 -1879 5929 5621 6228 90 13 14 chr11 111776196 111776787 -37006685 + L1PA13 LINE L1 4736 5326 -837 2097 124 3 7 chr11 111776787 111777086 -37006386 - AluSc SINE Alu -11 298 1 6228 90 13 14 chr11 111777086 111777901 -37005571 + L1PA13 LINE L1 5326 6162 -1 1404 246 27 64 chr11 111777901 111778155 -37005317 - L1MC4a LINE L1 -2187 5621 5359 1591 195 23 23 chr11 111778180 111778487 -37004985 + AluJo SINE Alu 1 307 -5 307 325 99 48 chr11 111778504 111778876 -37004596 - L1MC4a LINE L1 -831 5315 4925 2212 106 20 0 chr11 111778902 111779205 -37004267 - AluSx SINE Alu -3 309 1 227 271 14 29 chr11 111779346 111779416 -37004056 - MIR SINE MIR 0 262 194 457 283 134 16 chr11 111779919 111780106 -37003366 + L2 LINE L2 3105 3313 0 497 270 49 12 chr11 111780118 111780281 -37003191 + MIR SINE MIR 33 201 -61 390 364 89 19 chr11 111781543 111781859 -37001613 + L2 LINE L2 2247 2584 -730 437 133 32 28 chr11 111781867 111781993 -37001479 - MSTA LTR MaLR 0 428 302 6414 193 13 2 chr11 111782009 111783180 -37000292 - MSTB-int LTR MaLR -467 1184 1 2251 165 28 24 chr11 111783180 111783604 -36999868 - MSTB LTR MaLR 0 426 1 549 355 62 17 chr11 111783605 111784084 -36999388 + L2 LINE L2 2589 3084 -188 1449 232 0 0 chr11 111784273 111784540 -36998932 + Tigger7 DNA MER2_type 1 267 -466 515 214 0 10 chr11 111784538 111784636 -36998836 + Tigger7 DNA MER2_type 2393 2489 -2 * 208 321 72 110 chr11 111784638 111784730 -36998742 + L2 LINE L2 2613 2707 -607 2124 136 0 7 chr11 111784730 111785039 -36998433 - AluSx SINE Alu -5 307 1 208 321 72 110 chr11 111785039 111785264 -36998208 + L2 LINE L2 2707 2918 -396 24 0 0 0 chr11 111785957 111785981 -36997491 + AT_rich Low_complexity Low_complexity 1 24 0 182 314 267 0 chr11 111786631 111786736 -36996736 - L2 LINE L2 -1 3271 3139 261 298 37 65 chr11 111787766 111787919 -36995553 + MIR SINE MIR 43 191 -71 520 113 0 0 chr11 111787981 111788061 -36995411 - MADE1 DNA Mariner 0 80 1 1588 132 35 0 chr11 111788170 111788427 -36995045 - L1PB4 LINE L1 -3 6153 5888 334 377 0 0 chr11 111789214 111789336 -36994136 + MIR3 SINE MIR 34 155 -53 3451 260 110 31 chr11 111789423 111790663 -36992809 - L2 LINE L2 -19 3294 1870 1918 148 0 35 chr11 111790663 111790973 -36992499 - AluSx SINE Alu -13 299 1 3451 260 110 31 chr11 111790973 111791163 -36992309 - L2 LINE L2 -1443 1870 1697 2995 25 3 3 chr11 111791163 111791521 -36991951 - L1PA3 LINE L1 -2 6153 5796 648 303 35 0 chr11 111791947 111792145 -36991327 - MIR SINE MIR -6 256 52 855 135 30 8 chr11 111793000 111793133 -36990339 - AluJo SINE Alu -174 138 3 303 71 0 0 chr11 111793172 111793214 -36990258 + (TCCA)n Simple_repeat Simple_repeat 2 43 0 232 383 0 21 chr11 111793222 111793316 -36990156 - L2 LINE L2 -31 3241 3150 244 328 121 11 chr11 111793412 111793586 -36989886 + L2 LINE L2 2844 3036 -236 204 188 0 0 chr11 111793872 111793904 -36989568 + (CA)n Simple_repeat Simple_repeat 2 33 0 369 219 0 24 chr11 111793918 111794041 -36989431 + (TA)n Simple_repeat Simple_repeat 2 121 0 307 291 23 0 chr11 111794058 111794144 -36989328 + L1MC4 LINE L1 6615 6702 -1340 276 253 23 0 chr11 111794160 111794247 -36989225 - L1MC4 LINE L1 -1340 6702 6614 236 197 0 16 chr11 111794249 111794310 -36989162 + (CATATA)n Simple_repeat Simple_repeat 6 65 0 218 189 0 0 chr11 111794325 111794362 -36989110 + (TATG)n Simple_repeat Simple_repeat 2 38 0 258 194 21 54 chr11 111794362 111794455 -36989017 - L1MC4 LINE L1 -1339 6703 6614 180 111 0 0 chr11 111794455 111794482 -36988990 + (CATATA)n Simple_repeat Simple_repeat 4 30 0 244 161 32 16 chr11 111794484 111794546 -36988926 - L1MCa LINE L1 -4358 2068 2006 240 238 19 0 chr11 111794539 111794628 -36988844 - L1MC4 LINE L1 -1339 6983 2006 * 300 250 0 0 chr11 111794628 111794708 -36988764 + (TA)n Simple_repeat Simple_repeat 1 80 0 240 245 0 43 chr11 111794709 111794803 -36988669 - L1MC4 LINE L1 -1339 6703 6614 * 247 296 0 0 chr11 111794770 111794858 -36988614 + L1MC4 LINE L1 6615 6702 -1340 228 182 0 0 chr11 111794862 111794906 -36988566 + (TA)n Simple_repeat Simple_repeat 1 44 0 249 284 0 0 chr11 111794908 111794996 -36988476 + L1MC4 LINE L1 6616 6703 -1339 248 239 0 43 chr11 111794916 111795008 -36988464 - L1MC4 LINE L1 -1341 6701 6614 * 182 191 21 0 chr11 111795011 111795058 -36988414 + (TA)n Simple_repeat Simple_repeat 1 48 0 570 273 106 10 chr11 111795438 111795636 -36987836 + MIR SINE MIR 40 256 -6 2530 65 0 0 chr11 111796316 111796623 -36986849 + AluY SINE Alu 5 311 0 243 61 0 0 chr11 111796916 111796949 -36986523 + (A)n Simple_repeat Simple_repeat 1 33 0 1569 190 21 7 chr11 111796963 111797242 -36986230 + AluJo SINE Alu 9 291 -21 387 0 0 0 chr11 111797243 111797286 -36986186 + (TTAAA)n Simple_repeat Simple_repeat 4 46 0 551 241 44 38 chr11 111797691 111797849 -36985623 + L2 LINE L2 1441 1599 -1715 1898 144 0 7 chr11 111797849 111798127 -36985345 + AluSx SINE Alu 1 276 -36 31 76 0 0 chr11 111798130 111798196 -36985276 + AT_rich Low_complexity Low_complexity 1 66 0 7296 208 33 27 chr11 111798232 111800627 -36982845 - L1M3 LINE L1 -437 5743 3342 3376 50 0 0 chr11 111800972 111801395 -36982077 - L1P LINE L1 -1036 5110 4688 6944 32 1 0 chr11 111801395 111802214 -36981258 + L1PA5 LINE L1 5332 6151 -3 3451 260 110 31 chr11 111802214 111802404 -36981068 + L2 LINE L2 1697 1870 -1443 1918 148 0 35 chr11 111802404 111802714 -36980758 + AluSx SINE Alu 1 299 -13 3451 260 110 31 chr11 111802714 111803954 -36979518 + L2 LINE L2 1870 3294 -19 334 377 0 0 chr11 111804041 111804163 -36979309 - MIR3 SINE MIR -53 155 34 1588 132 35 0 chr11 111804950 111805207 -36978265 + L1PB4 LINE L1 5888 6153 -3 1337 224 27 0 chr11 111805363 111805622 -36977850 + MLT1A1 LTR MaLR 99 364 -1 198 0 0 0 chr11 111806341 111806363 -36977109 + (TA)n Simple_repeat Simple_repeat 2 23 0 667 238 93 21 chr11 111806507 111806700 -36976772 - MLT1I LTR MaLR -202 207 1 2143 115 0 43 chr11 111806716 111807039 -36976433 - AluSx SINE Alu -3 309 1 266 224 20 0 chr11 111807100 111807149 -36976323 + MLT1I LTR MaLR 195 244 -165 556 289 127 42 chr11 111809148 111809525 -36973947 + MLT1I LTR MaLR 1 409 0 708 308 66 0 chr11 111809526 111809753 -36973719 - MLT1J2 LTR MaLR -8 442 201 665 162 0 0 chr11 111809810 111809927 -36973545 - AluSg/x SINE Alu 0 312 196 616 285 29 0 chr11 111810077 111810249 -36973223 + MER45A DNA AcHobo 1 177 -1 247 300 14 57 chr11 111811392 111811532 -36971940 - MIR SINE MIR -56 206 73 2038 128 3 3 chr11 111811804 111812094 -36971378 - AluSx SINE Alu -22 290 1 881 146 0 0 chr11 111812411 111812555 -36970917 - L1MC3 LINE L1 -17 7768 7625 388 245 117 0 chr11 111812568 111812662 -36970810 - MLT1J2 LTR MaLR -489 106 2 770 231 118 11 chr11 111812821 111813007 -36970465 + MLT1I LTR MaLR 64 269 -140 2203 136 24 0 chr11 111814208 111814547 -36968925 - MER7A DNA MER2_type -1 345 1 285 336 121 0 chr11 111814547 111814663 -36968809 + L2 LINE L2 3139 3268 -4 706 233 78 39 chr11 111815241 111815473 -36967999 - L1ME1 LINE L1 -4 6162 5922 * 907 213 91 25 chr11 111815465 111815785 -36967687 - L1MC5 LINE L1 -317 7644 7304 349 229 131 49 chr11 111815830 111816013 -36967459 - MLT1K LTR MaLR -13 575 378 329 315 22 0 chr11 111816079 111816171 -36967301 - MLT1K LTR MaLR -338 250 157 338 327 23 64 chr11 111817407 111817627 -36965845 + MIR SINE MIR 50 260 -2 1683 159 22 11 chr11 111817657 111817934 -36965538 - AluJb SINE Alu -27 285 6 734 261 90 45 chr11 111818347 111818815 -36964657 - L1ME1 LINE L1 -306 5815 5327 256 88 0 0 chr11 111818973 111819007 -36964465 + U2 snRNA snRNA 1 34 -154 2702 186 49 118 chr11 111819007 111819628 -36963844 - L1ME1 LINE L1 -11 6155 5492 2615 40 0 0 chr11 111819628 111819928 -36963544 + AluY SINE Alu 1 300 -11 2702 186 49 118 chr11 111819928 111820179 -36963293 - L1ME1 LINE L1 -674 5492 5225 684 211 0 0 chr11 111820179 111820302 -36963170 + FLAM_C SINE Alu 1 123 -10 2702 186 49 118 chr11 111820302 111820679 -36962793 - L1ME1 LINE L1 -941 5225 4999 2407 57 13 10 chr11 111820679 111820980 -36962492 - AluY SINE Alu -9 302 1 2702 186 49 118 chr11 111820980 111821021 -36962451 - L1ME1 LINE L1 -1167 4999 4957 315 65 0 0 chr11 111821024 111821070 -36962402 + (TG)n Simple_repeat Simple_repeat 2 47 0 287 259 36 0 chr11 111821070 111821182 -36962290 + (TA)n Simple_repeat Simple_repeat 2 117 0 1482 229 30 32 chr11 111821184 111821683 -36961789 - L1ME1 LINE L1 -1207 4939 4442 2040 157 0 0 chr11 111821731 111822043 -36961429 + AluSx SINE Alu 1 312 0 26 50 0 0 chr11 111822043 111822083 -36961389 + AT_rich Low_complexity Low_complexity 1 40 0 25 0 0 0 chr11 111822261 111822286 -36961186 + AT_rich Low_complexity Low_complexity 1 25 0 186 43 0 0 chr11 111822604 111822627 -36960845 + (TAG)n Simple_repeat Simple_repeat 2 24 0 858 239 81 19 chr11 111823038 111823377 -36960095 - MLT1B LTR MaLR 0 390 1 22 0 0 0 chr11 111823887 111823909 -36959563 + AT_rich Low_complexity Low_complexity 1 22 0 458 345 81 39 chr11 111824208 111824518 -36958954 + L3 LINE CR1 259 581 -996 266 260 14 41 chr11 111824526 111824599 -36958873 - L2 LINE L2 0 3272 3202 998 356 82 21 chr11 111824698 111825401 -36958071 + L3 LINE CR1 581 1326 -251 368 326 134 50 chr11 111825400 111825639 -36957833 - MIR SINE MIR -3 259 1 * 351 339 36 31 chr11 111825649 111825844 -36957628 + L3 LINE CR1 1347 1542 -35 8823 22 0 1 chr11 111825866 111826909 -36956563 - L1P LINE L1 -935 5211 4170 1017 17 0 0 chr11 111826909 111827025 -36956447 + L1PA2 LINE L1 6037 6153 -2 196 263 150 38 chr11 111827123 111827203 -36956269 - L2 LINE L2 -1 3271 3183 * 208 335 214 0 chr11 111827178 111827384 -36956088 + MIR SINE MIR 7 256 -6 30 45 0 0 chr11 111827753 111827797 -36955675 + AT_rich Low_complexity Low_complexity 1 44 0 362 386 47 0 chr11 111828742 111828913 -36954559 - MER5A DNA MER1_type -1 188 10 384 243 29 0 chr11 111829886 111829989 -36953483 - MIR SINE MIR -3 259 154 415 159 23 0 chr11 111830041 111830129 -36953343 + L1MA7 LINE L1 6192 6281 -10 2510 65 3 0 chr11 111831842 111832148 -36951324 - AluY SINE Alu -4 307 1 1910 129 39 24 chr11 111833570 111833902 -36949570 + MER1B DNA MER1_type 1 337 0 262 264 75 28 chr11 111834066 111834172 -36949300 + L3 LINE CR1 996 1106 -471 233 333 0 14 chr11 111834220 111834289 -36949183 - L2 LINE L2 0 3272 3205 715 338 105 12 chr11 111834639 111834982 -36948490 + L3 LINE CR1 1173 1547 -30 560 292 35 35 chr11 111835042 111835244 -36948228 - MIR3 SINE MIR -5 203 2 198 350 14 57 chr11 111835264 111835404 -36948068 + L3 LINE CR1 60 193 -1384 213 267 114 29 chr11 111835575 111835680 -36947792 - L2 LINE L2 -1 3312 3199 207 0 0 0 chr11 111835892 111835915 -36947557 + (CTGTG)n Simple_repeat Simple_repeat 1 23 0 336 360 99 19 chr11 111836325 111836486 -36946986 + MIR3 SINE MIR 14 187 -21 222 255 0 0 chr11 111836542 111836593 -36946879 + L2 LINE L2 3263 3313 0 2668 182 19 2 chr11 111836946 111837418 -36946054 - MLT2B2 LTR ERVL -15 500 21 481 319 0 7 chr11 111837616 111837751 -36945721 + Charlie1a DNA MER1_type 27 160 -1295 1975 212 79 21 chr11 111837752 111838338 -36945134 + MLT1E3 LTR MaLR 4 624 0 * 4362 163 31 141 chr11 111838338 111838887 -36944585 + Charlie1a DNA MER1_type 156 765 -1996 895 197 0 0 chr11 111838887 111839039 -36944433 + FRAM SINE Alu 1 152 -24 4362 163 31 141 chr11 111839039 111839739 -36943733 + Charlie1a DNA MER1_type 765 1399 -1362 2172 116 3 3 chr11 111839739 111840041 -36943431 - AluSg SINE Alu -7 303 2 4362 163 31 141 chr11 111840041 111840062 -36943410 + Charlie1a DNA MER1_type 1399 1421 -34 226 233 22 67 chr11 111840276 111840366 -36943106 - MLT1J1 LTR MaLR -4 442 357 381 218 13 0 chr11 111840497 111840575 -36942897 - MLT1I LTR MaLR -238 171 93 244 263 53 0 chr11 111840679 111840755 -36942717 + MIR SINE MIR 51 130 -132 242 284 0 30 chr11 111841621 111841662 -36941810 + L2 LINE L2 3199 3239 -33 414 76 212 0 chr11 111841662 111841728 -36941744 + MADE1 DNA Mariner 1 80 0 242 284 0 30 chr11 111841728 111841753 -36941719 + L2 LINE L2 3239 3263 -9 206 229 161 73 chr11 111842072 111842264 -36941208 - MIR SINE MIR -6 256 48 1750 99 66 18 chr11 111843142 111843415 -36940057 - AluSx SINE Alu -26 286 1 200 224 52 35 chr11 111843864 111843922 -36939550 + L2 LINE L2 3191 3249 -23 2257 82 3 26 chr11 111843925 111844229 -36939243 - AluSp SINE Alu -16 297 1 898 260 96 28 chr11 111844304 111844700 -36938772 - L1ME4a LINE L1 -288 5833 5411 379 303 139 0 chr11 111844852 111844974 -36938498 - L2 LINE L2 -1 3271 3133 285 269 142 15 chr11 111845834 111845968 -36937504 - MIR SINE MIR -47 161 11 270 333 208 8 chr11 111846268 111846388 -36937084 - L2 LINE L2 -1 3271 3128 21 57 0 0 chr11 111847253 111847288 -36936184 + AT_rich Low_complexity Low_complexity 1 35 0 977 171 79 9 chr11 111847530 111847758 -36935714 + L1MA4 LINE L1 6049 6292 -8 243 161 81 0 chr11 111847763 111847825 -36935647 + L1MA4 LINE L1 6226 6292 -8 342 153 0 0 chr11 111847830 111847902 -36935570 + L1MA4 LINE L1 6226 6297 -3 383 217 36 0 chr11 111848028 111848111 -36935361 - MIR SINE MIR -62 200 115 223 284 168 0 chr11 111848689 111848784 -36934688 + L2 LINE L2 3200 3310 -3 2137 125 40 11 chr11 111849077 111849428 -36934044 - MER46B DNA MER2_type 0 236 1 1777 260 158 24 chr11 111849832 111850846 -36932626 + L2 LINE L2 2152 3311 -2 321 307 80 15 chr11 111851037 111851174 -36932298 - MIR SINE MIR -70 192 47 1866 143 0 51 chr11 111851552 111851867 -36931605 + AluSx SINE Alu 3 301 -11 23 0 0 0 chr11 111853033 111853056 -36930416 + AT_rich Low_complexity Low_complexity 1 23 0 1469 181 4 8 chr11 111854481 111854719 -36928753 - MER8 DNA MER2_type -2 237 1 440 284 61 14 chr11 111855473 111855621 -36927851 - MER91B DNA MER1_type 0 190 36 501 288 187 45 chr11 111857373 111857769 -36925703 - Charlie8 DNA MER1_type -1957 460 9 21 0 0 0 chr11 111858376 111858397 -36925075 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr11 111858743 111858772 -36924700 + AT_rich Low_complexity Low_complexity 1 29 0 389 237 10 0 chr11 111858982 111859079 -36924393 - L1ME3 LINE L1 -67 6095 5998 331 298 180 17 chr11 111859154 111859332 -36924140 + MIR SINE MIR 46 252 -10 2245 99 0 17 chr11 111859509 111859811 -36923661 - AluSx SINE Alu -15 297 1 461 290 169 19 chr11 111862048 111862420 -36921052 - L1M4 LINE L1 -2295 3851 3424 24 67 0 0 chr11 111862442 111862487 -36920985 + AT_rich Low_complexity Low_complexity 1 45 0 363 117 39 26 chr11 111862566 111862643 -36920829 - L1M4 LINE L1 -3116 3030 2953 3613 100 18 25 chr11 111862645 111863206 -36920266 + L1PA14 LINE L1 5605 6161 0 638 289 0 6 chr11 111863265 111863431 -36920041 - L2 LINE L2 -1420 1894 1730 2656 246 102 25 chr11 111863431 111864550 -36918922 + L1MDa LINE L1 36 1336 -5204 2963 230 77 36 chr11 111864550 111865749 -36917723 + L1MDa LINE L1 2506 3753 -2787 383 222 34 11 chr11 111865809 111865985 -36917487 + (TA)n Simple_repeat Simple_repeat 1 180 0 723 263 67 0 chr11 111866018 111866560 -36916912 + L1MDa LINE L1 3774 4530 -2010 4959 60 7 52 chr11 111866560 111867275 -36916197 + L1PA5 LINE L1 5471 6153 -1 22 35 0 0 chr11 111867279 111867308 -36916164 + AT_rich Low_complexity Low_complexity 1 29 0 260 313 61 10 chr11 111867625 111867724 -36915748 - L2 LINE L2 -1 3271 3168 285 231 250 0 chr11 111869854 111869962 -36913510 - MIR SINE MIR -12 250 116 282 149 0 0 chr11 111870047 111870094 -36913378 - MADE1 DNA Mariner 0 80 34 1774 207 156 62 chr11 111870115 111870870 -36912602 - LTR1B LTR ERV1 0 826 1 322 260 100 13 chr11 111871479 111871629 -36911843 - MER103 DNA DNA -1 165 3 515 314 110 35 chr11 111871916 111872289 -36911183 + L2 LINE L2 2871 3271 -42 931 310 23 8 chr11 111872297 111872649 -36910823 + L2 LINE L2 2957 3313 0 218 259 47 35 chr11 111872655 111872740 -36910732 - MIR SINE MIR -170 92 7 1728 184 0 7 chr11 111873351 111873639 -36909833 + AluJb SINE Alu 1 286 -26 344 282 7 63 chr11 111873848 111873990 -36909482 + L2 LINE L2 3180 3313 0 315 333 8 38 chr11 111874073 111874205 -36909267 - MIR SINE MIR -123 139 12 276 77 0 0 chr11 111874383 111874422 -36909050 + (TG)n Simple_repeat Simple_repeat 1 39 0 1336 178 75 93 chr11 111874457 111874521 -36908951 + LTR36 LTR ERV1 8 72 -539 2169 107 10 3 chr11 111874521 111874819 -36908653 - AluSx SINE Alu -8 304 5 1336 178 75 93 chr11 111874819 111875297 -36908175 + LTR36 LTR ERV1 72 611 0 552 163 0 0 chr11 111875299 111875391 -36908081 + Tigger5 DNA MER2_type 18 109 -2214 1238 154 0 0 chr11 111875409 111875610 -36907862 + Tigger5 DNA MER2_type 2120 2320 -3 188 65 0 32 chr11 111875636 111875667 -36907805 + (TG)n Simple_repeat Simple_repeat 1 30 0 558 161 54 46 chr11 111876471 111876601 -36906871 - FLAM_A SINE Alu -2 131 1 602 250 64 49 chr11 111878718 111878922 -36904550 + MIR SINE MIR 14 220 -42 1667 198 42 0 chr11 111883408 111883741 -36899731 + MER7A DNA MER2_type 1 345 -1 263 317 45 38 chr11 111883919 111884105 -36899367 - MIR3 SINE MIR -62 146 2 333 0 0 0 chr11 111887637 111887674 -36895798 + (CA)n Simple_repeat Simple_repeat 2 38 0 1669 179 38 24 chr11 111887754 111888045 -36895427 - AluSx SINE Alu -13 299 5 189 211 0 0 chr11 111888430 111888482 -36894990 + (CA)n Simple_repeat Simple_repeat 2 53 0 1832 125 7 11 chr11 111890085 111890372 -36893100 - AluSx SINE Alu -17 295 10 1022 113 0 0 chr11 111890421 111890554 -36892918 + AluSq/x SINE Alu 1 133 -179 382 367 13 19 chr11 111891225 111891383 -36892089 - L2 LINE L2 0 3272 3116 575 316 57 45 chr11 111891519 111891959 -36891513 - L2 LINE L2 -710 2604 2160 335 281 26 35 chr11 111892220 111892334 -36891138 - L1MC4a LINE L1 -1884 5924 5812 263 49 0 0 chr11 111892697 111892738 -36890734 + L1MA4A LINE L1 6261 6301 -2 1131 120 5 10 chr11 111892945 111893137 -36890335 - MER6 DNA MER2_type -4 861 671 1997 137 0 3 chr11 111893139 111893423 -36890049 + AluSx SINE Alu 1 283 -29 36 0 0 0 chr11 111893494 111893530 -36889942 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr11 111894082 111894105 -36889367 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr11 111895024 111895045 -36888427 + AT_rich Low_complexity Low_complexity 1 21 0 2048 143 3 0 chr11 111895126 111895419 -36888053 - AluSx SINE Alu -18 294 1 1358 193 64 4 chr11 111895453 111895563 -36887909 + AluJb SINE Alu 1 103 -209 228 35 0 0 chr11 111895563 111895592 -36887880 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1358 193 64 4 chr11 111895592 111895745 -36887727 + AluJb SINE Alu 103 280 -32 183 80 0 0 chr11 111895745 111895770 -36887702 + (GGAGAA)n Simple_repeat Simple_repeat 4 28 0 957 150 0 0 chr11 111895774 111895921 -36887551 + FRAM SINE Alu 27 173 -3 286 244 12 0 chr11 111895990 111896072 -36887400 + (TAGA)n Simple_repeat Simple_repeat 4 86 0 234 30 61 0 chr11 111896737 111896770 -36886702 - MER75 DNA T2_type -5 509 475 1809 81 0 0 chr11 111897385 111897608 -36885864 + AluSq SINE Alu 1 223 -90 4313 69 7 0 chr11 111897936 111898486 -36884986 + MER41A LTR ERV1 1 554 0 301 360 9 9 chr11 111899776 111899890 -36883582 - MIR3 SINE MIR -12 196 83 5313 128 12 6 chr11 111900359 111901262 -36882210 - L1PA13 LINE L1 -1 6162 5254 933 188 0 12 chr11 111901300 111901465 -36882007 - FAM SINE Alu -8 167 5 1740 144 21 28 chr11 111901701 111901986 -36881486 + AluSq SINE Alu 1 283 -30 495 314 91 0 chr11 111902210 111902430 -36881042 - MER115 DNA AcHobo -238 455 216 559 217 86 18 chr11 111902456 111902577 -36880895 - Charlie5 DNA MER1_type 0 2624 2513 2371 102 0 0 chr11 111902577 111902872 -36880600 - AluSx SINE Alu -17 295 1 559 217 86 18 chr11 111902872 111903012 -36880460 - Charlie5 DNA MER1_type -111 2513 26 2142 123 3 22 chr11 111903348 111903666 -36879806 - AluSx SINE Alu 0 312 1 187 309 118 0 chr11 111903813 111903881 -36879591 + MIR SINE MIR 82 157 -105 * 756 235 134 0 chr11 111903874 111904091 -36879381 - MIR SINE MIR 0 262 17 283 226 0 0 chr11 111904099 111904152 -36879320 + L2 LINE L2 3201 3253 -19 207 191 36 164 chr11 111907054 111907164 -36876308 + MIR SINE MIR 111 206 -56 784 96 0 22 chr11 111907222 111907357 -36876115 + (TTCC)n Simple_repeat Simple_repeat 4 135 0 351 313 26 41 chr11 111909336 111909531 -36873941 + L2 LINE L2 2809 3000 -313 523 285 48 0 chr11 111909713 111909858 -36873614 + MIR3 SINE MIR 28 180 -28 226 357 129 20 chr11 111910183 111910477 -36872995 + L2 LINE L2 2433 2758 -556 459 325 52 12 chr11 111911652 111911901 -36871571 - MIR SINE MIR -2 260 2 1973 145 0 0 chr11 111912199 111912516 -36870956 + AluSx SINE Alu 3 319 0 2009 137 0 7 chr11 111914008 111914314 -36869158 + AluSx SINE Alu 1 304 -8 190 296 186 32 chr11 111914422 111914675 -36868797 + L2 LINE L2 2814 3105 -208 227 277 15 0 chr11 111914748 111914813 -36868659 + (TATATG)n Simple_repeat Simple_repeat 5 70 0 287 238 0 0 chr11 111915723 111915786 -36867686 + MER115 DNA AcHobo 601 663 -30 3131 153 32 55 chr11 111915937 111916460 -36867012 - L1MA9 LINE L1 -17 6295 5761 219 69 0 0 chr11 111916460 111916489 -36866983 + (TA)n Simple_repeat Simple_repeat 2 30 0 2024 102 10 14 chr11 111916495 111916789 -36866683 - AluSp SINE Alu -20 293 1 3131 153 32 55 chr11 111916789 111916943 -36866529 - L1MA9 LINE L1 -556 5756 5627 1930 158 0 0 chr11 111916950 111917241 -36866231 - AluSx SINE Alu -21 291 1 2046 152 0 10 chr11 111918213 111918523 -36864949 + AluSx SINE Alu 1 307 -5 939 198 6 0 chr11 111918912 111919074 -36864398 - FAM SINE Alu -12 163 1 793 241 90 0 chr11 111919585 111919830 -36863642 + L1ME1 LINE L1 5792 6058 -108 261 100 0 0 chr11 111919931 111919971 -36863501 - L1M3c LINE L1 -4761 1140 1101 1677 167 102 12 chr11 111919971 111920306 -36863166 - MLT1A1 LTR MaLR 0 365 1 750 175 4 143 chr11 111920306 111920586 -36862886 - L1MB1 LINE L1 -146 6022 5782 420 143 0 0 chr11 111920586 111920656 -36862816 + (TA)n Simple_repeat Simple_repeat 1 70 0 1760 152 7 24 chr11 111920698 111920994 -36862478 - AluSx SINE Alu -21 291 1 201 74 0 0 chr11 111921006 111921033 -36862439 + (TTCC)n Simple_repeat Simple_repeat 2 28 0 1999 152 9 19 chr11 111921033 111921348 -36862124 - AluSx SINE Alu 0 312 1 2786 150 23 13 chr11 111921351 111922198 -36861274 - L1MB1 LINE L1 -389 5779 4918 604 280 23 0 chr11 111922197 111922415 -36861057 - L1M3c LINE L1 -3579 2391 2169 * 390 74 0 0 chr11 111922411 111922465 -36861007 - L1M3b LINE L1 -4738 1543 1490 * 956 181 22 6 chr11 111922470 111922652 -36860820 - MLT1A1 LTR MaLR 0 365 181 1174 224 105 0 chr11 111922652 111923004 -36860468 - L1M3c LINE L1 -4827 1064 676 293 291 35 25 chr11 111923158 111923281 -36860191 - L1M3c LINE L1 -5214 677 289 1026 331 22 19 chr11 111923417 111924017 -36859455 - L1 LINE L1 -5252 639 1 21 82 0 0 chr11 111924163 111924212 -36859260 + AT_rich Low_complexity Low_complexity 1 49 0 736 163 0 24 chr11 111924326 111924449 -36859023 - FLAM_C SINE Alu -12 131 12 276 246 35 0 chr11 111924620 111924677 -36858795 + L2 LINE L2 3193 3251 -21 451 250 118 14 chr11 111924725 111924869 -36858603 + MIR SINE MIR 10 168 -94 21 0 0 0 chr11 111925601 111925622 -36857850 + AT_rich Low_complexity Low_complexity 1 21 0 1211 156 48 41 chr11 111925630 111925666 -36857806 - MER61B LTR ERV1 -28 396 362 2177 147 41 14 chr11 111925666 111926103 -36857369 - LTR7 LTR ERV1 -1 449 1 1211 156 48 41 chr11 111926103 111926366 -36857106 - MER61B LTR ERV1 -62 362 2 35 41 0 0 chr11 111926367 111926416 -36857056 + AT_rich Low_complexity Low_complexity 1 49 0 4755 37 3 2 chr11 111927207 111927781 -36855691 - L1PA5 LINE L1 -4 6150 5576 668 243 15 0 chr11 111927830 111927966 -36855506 - MER5A DNA MER1_type -50 139 2 2773 83 98 0 chr11 111928146 111928554 -36854918 + LTR7 LTR ERV1 1 448 -2 15545 146 51 48 chr11 111928556 111932513 -36850959 + HERVH LTR ERV1 1 3993 -3720 4424 137 0 3 chr11 111932515 111933179 -36850293 + HERVH LTR ERV1 4488 5149 -2564 1214 106 75 49 chr11 111933159 111933385 -36850087 + HERVH LTR ERV1 5588 5819 -1894 * 2377 99 48 8 chr11 111933385 111933760 -36849712 + HERVH LTR ERV1 7324 7713 0 1717 75 391 0 chr11 111933760 111934082 -36849390 + LTR7 LTR ERV1 1 448 -2 812 226 113 0 chr11 111934546 111934758 -36848714 - MIR SINE MIR -22 240 5 1492 157 42 35 chr11 111934820 111935126 -36848346 - AluJb SINE Alu 0 312 1 1912 130 4 4 chr11 111935129 111935406 -36848066 - AluSx SINE Alu -35 277 1 1145 191 68 51 chr11 111935817 111936172 -36847300 - L1ME LINE L1 -539 5623 5263 26 64 0 0 chr11 111936239 111936286 -36847186 + AT_rich Low_complexity Low_complexity 1 47 0 896 227 103 100 chr11 111936286 111936827 -36846645 + L1ME3 LINE L1 5619 6161 -1 1763 157 0 46 chr11 111936862 111937168 -36846304 + AluJb SINE Alu 2 293 -19 344 263 195 0 chr11 111937173 111937291 -36846181 + L2 LINE L2 3169 3309 -4 320 275 78 21 chr11 111937778 111937920 -36845552 + L1MA4 LINE L1 4903 5052 -1094 262 250 136 16 chr11 111938039 111938223 -36845249 + L1MC/D LINE L1 5265 5470 -2338 1974 141 0 3 chr11 111938318 111938634 -36844838 + AluSx SINE Alu 1 315 0 1269 197 84 84 chr11 111938926 111938995 -36844477 + LTR37B LTR ERV1 6 74 -394 1713 164 3 23 chr11 111938995 111939305 -36844167 - AluSx SINE Alu -8 304 1 1269 197 84 84 chr11 111939305 111939687 -36843785 + LTR37B LTR ERV1 73 457 -11 2002 146 3 13 chr11 111939693 111940008 -36843464 + AluJb SINE Alu 1 312 0 2171 120 48 31 chr11 111940067 111940425 -36843047 - THE1B LTR MaLR 0 364 1 465 92 0 0 chr11 111940455 111940531 -36842941 - L1PB1 LINE L1 0 6151 6076 1906 138 3 10 chr11 111940761 111941051 -36842421 - AluSq SINE Alu -25 288 1 2242 90 0 10 chr11 111941617 111941916 -36841556 - AluY SINE Alu -15 296 1 3211 147 45 74 chr11 111942003 111942484 -36840988 + L1MA4 LINE L1 5211 5666 -634 2239 121 19 27 chr11 111942484 111942849 -36840623 - THE1B LTR MaLR -2 362 1 3211 147 45 74 chr11 111942849 111943127 -36840345 + L1MA4 LINE L1 5666 5950 -350 645 72 0 0 chr11 111943127 111943210 -36840262 + L1P4 LINE L1 5720 5802 -363 2181 128 27 38 chr11 111943210 111943535 -36839937 + THE1B LTR MaLR 1 324 -40 1994 121 7 7 chr11 111943535 111943861 -36839611 - AluSx SINE Alu 0 326 1 2181 128 27 38 chr11 111943861 111943902 -36839570 + THE1B LTR MaLR 324 364 0 2947 121 7 0 chr11 111943902 111944402 -36839070 + THE1B-int LTR MaLR 1 503 -1148 292 146 0 0 chr11 111944403 111944444 -36839028 - MER58 DNA MER1_type -58 283 243 1772 133 7 15 chr11 111944446 111944716 -36838756 + AluSx SINE Alu 1 268 -44 1838 140 35 21 chr11 111944751 111945037 -36838435 - THE1B LTR MaLR -74 290 1 811 199 29 0 chr11 111945072 111945243 -36838229 - MER58 DNA MER1_type -2163 257 82 548 242 32 0 chr11 111945244 111945368 -36838104 + FLAM_A SINE Alu 2 129 -4 195 373 63 8 chr11 111945979 111946105 -36837367 + L2 LINE L2 2928 3060 -212 941 55 24 0 chr11 111946372 111946499 -36836973 + L1PA5 LINE L1 6023 6152 -2 1612 184 81 103 chr11 111946499 111947205 -36836267 + L1M4 LINE L1 4163 4852 -1294 501 255 14 0 chr11 111947219 111947360 -36836112 + L1M4 LINE L1 4977 5119 -1027 1396 167 17 4 chr11 111947378 111947611 -36835861 + AluSx SINE Alu 9 244 -68 387 250 142 0 chr11 111947670 111947846 -36835626 + L1M4 LINE L1 5102 5302 -844 335 280 166 40 chr11 111947846 111947978 -36835494 - L1MEd LINE L1 -5018 1101 939 2083 106 11 0 chr11 111947978 111948274 -36835198 - AluSc SINE Alu 0 301 3 335 280 166 40 chr11 111948274 111948315 -36835157 - L1MEd LINE L1 -5180 939 905 426 264 84 62 chr11 111948782 111948960 -36834512 - L1MEd LINE L1 -5838 281 93 2191 107 3 0 chr11 111948960 111949251 -36834221 - AluSg SINE Alu -18 292 1 426 264 84 62 chr11 111949251 111949345 -36834127 - L1MEd LINE L1 -6026 93 3 214 238 143 0 chr11 111949749 111949812 -36833660 + L2 LINE L2 3196 3267 -5 23 0 0 0 chr11 111949847 111949870 -36833602 + AT_rich Low_complexity Low_complexity 1 23 0 415 323 31 0 chr11 111950074 111950201 -36833271 + MIR SINE MIR 23 153 -109 500 248 62 16 chr11 111950219 111950348 -36833124 + MIR SINE MIR 94 228 -34 2349 71 0 7 chr11 111950495 111950789 -36832683 + AluY SINE Alu 7 298 -13 222 335 165 24 chr11 111951085 111951249 -36832223 + L3b LINE CR1 1293 1479 -104 240 228 28 152 chr11 111951380 111951525 -36831947 + MER20B DNA MER1_type 7 133 -650 1926 156 25 25 chr11 111952536 111952862 -36830610 + MER1B DNA MER1_type 5 330 -9 23 54 0 0 chr11 111952986 111953023 -36830449 + AT_rich Low_complexity Low_complexity 1 37 0 737 142 0 0 chr11 111953023 111953129 -36830343 + AluJo/FLAM SINE Alu 3 108 -204 1539 156 29 0 chr11 111953129 111953372 -36830100 + AluJo SINE Alu 50 299 -13 2154 85 10 17 chr11 111954299 111954594 -36828878 + AluSc SINE Alu 1 293 -16 252 255 96 96 chr11 111955151 111955245 -36828227 + MIR SINE MIR 31 124 -84 21 0 0 0 chr11 111955333 111955354 -36828118 + AT_rich Low_complexity Low_complexity 1 21 0 1836 158 17 0 chr11 111958282 111958580 -36824892 + AluJo SINE Alu 3 305 -7 2205 115 3 0 chr11 111958730 111959035 -36824437 + AluSg SINE Alu 1 306 -4 189 321 36 0 chr11 111959695 111959751 -36823721 + L2 LINE L2 3191 3248 -24 337 154 62 0 chr11 111959879 111959944 -36823528 - MIR SINE MIR 0 262 194 853 291 52 16 chr11 111960031 111960340 -36823132 + L2 LINE L2 2992 3311 -2 53 57 0 0 chr11 111960391 111960479 -36822993 + AT_rich Low_complexity Low_complexity 1 88 0 674 210 140 99 chr11 111960485 111960617 -36822855 + MIR SINE MIR 8 133 -129 1678 167 0 43 chr11 111960617 111960731 -36822741 + AluJb SINE Alu 1 118 -194 2402 97 0 0 chr11 111960731 111961041 -36822431 - AluY SINE Alu -1 310 1 1678 167 0 43 chr11 111961041 111961231 -36822241 + AluJb SINE Alu 118 292 -20 674 210 140 99 chr11 111961231 111961341 -36822131 + MIR SINE MIR 133 260 -2 202 281 18 0 chr11 111961867 111961924 -36821548 + GA-rich Low_complexity Low_complexity 3 60 0 180 214 48 83 chr11 111962000 111962084 -36821388 + L2 LINE L2 1041 1121 -2193 212 260 39 26 chr11 111962665 111962742 -36820730 + L2 LINE L2 3234 3311 -2 2368 73 0 10 chr11 111964202 111964515 -36818957 + AluSg SINE Alu 1 310 0 1984 100 7 7 chr11 111964985 111965255 -36818217 - AluSq SINE Alu -43 270 1 231 289 0 62 chr11 111965319 111965416 -36818056 - L2 LINE L2 0 3272 3182 * 542 258 20 20 chr11 111965415 111965566 -36817906 - MIR SINE MIR 0 262 112 614 324 120 34 chr11 111965986 111966530 -36816942 - L2 LINE L2 -10 3303 2701 792 180 88 69 chr11 111966533 111966750 -36816722 - MER58B DNA MER1_type 0 341 121 22 0 0 0 chr11 111967534 111967556 -36815916 + AT_rich Low_complexity Low_complexity 1 22 0 26 74 0 0 chr11 111967934 111967988 -36815484 + AT_rich Low_complexity Low_complexity 1 54 0 837 193 0 12 chr11 111968558 111968719 -36814753 - AluJo SINE Alu -124 188 30 2675 195 15 19 chr11 111968720 111969239 -36814233 + MER82 DNA MER2_type 21 537 -116 2130 105 41 0 chr11 111969646 111969940 -36813532 + AluSx SINE Alu 3 308 -4 22 21 0 62 chr11 111971108 111971156 -36812316 + AT_rich Low_complexity Low_complexity 1 45 0 260 236 202 8 chr11 111971186 111971322 -36812150 + L1MC/D LINE L1 5652 5811 -310 359 101 34 11 chr11 111971334 111971415 -36812057 + (TA)n Simple_repeat Simple_repeat 1 86 -5 756 23 0 0 chr11 111971415 111971503 -36811969 - L1PA5 LINE L1 -8 6146 6059 359 101 34 11 chr11 111971503 111971510 -36811962 + (TA)n Simple_repeat Simple_repeat 86 91 0 21 57 0 0 chr11 111971693 111971728 -36811744 + AT_rich Low_complexity Low_complexity 1 35 0 268 250 52 37 chr11 111972504 111972640 -36810832 - L1MC5 LINE L1 -36 7925 7788 468 237 65 37 chr11 111972698 111972913 -36810559 - L1MC5 LINE L1 -264 7697 7477 950 248 53 90 chr11 111973073 111973464 -36810008 - L1MC5 LINE L1 -764 7197 6837 2205 128 0 0 chr11 111973464 111973768 -36809704 - AluSx SINE Alu -8 304 1 950 248 53 90 chr11 111973768 111974039 -36809433 - L1MC5 LINE L1 -1124 6837 6558 31 0 0 0 chr11 111974973 111975004 -36808468 + AT_rich Low_complexity Low_complexity 1 31 0 215 362 0 0 chr11 111975406 111975464 -36808008 + L2 LINE L2 3205 3262 -10 945 210 0 0 chr11 111975922 111976089 -36807383 + AluJb SINE Alu 126 292 -20 24 0 0 0 chr11 111976238 111976262 -36807210 + AT_rich Low_complexity Low_complexity 1 24 0 309 243 40 61 chr11 111977779 111977927 -36805545 - MER103 DNA DNA 0 166 22 1968 148 7 10 chr11 111978290 111978595 -36804877 + AluJb SINE Alu 1 304 -8 233 156 0 0 chr11 111979113 111979158 -36804314 - L1MD3 LINE L1 -13 7982 7938 207 242 242 33 chr11 111980252 111980344 -36803128 - L2 LINE L2 0 3313 3241 654 257 63 0 chr11 111980344 111980550 -36802922 - MER20 DNA MER1_type 0 219 1 207 242 242 33 chr11 111980550 111980577 -36802895 - L2 LINE L2 -72 3241 3169 322 320 8 16 chr11 111980640 111980762 -36802710 - MIR SINE MIR -116 146 26 2371 73 0 7 chr11 111980763 111981063 -36802409 - AluY SINE Alu -13 298 1 284 311 0 0 chr11 111981680 111981754 -36801718 - L2 LINE L2 -6 3307 3234 920 305 122 25 chr11 111981932 111982726 -36800746 - L2 LINE L2 -95 3218 2349 192 390 59 0 chr11 111982756 111982874 -36800598 + L2 LINE L2 3141 3265 -7 27 49 0 0 chr11 111982971 111983012 -36800460 + AT_rich Low_complexity Low_complexity 1 41 0 2194 100 10 7 chr11 111983526 111983835 -36799637 + AluSx SINE Alu 1 310 -2 2691 182 64 8 chr11 111984001 111984533 -36798939 - MER68 LTR ERV1 0 562 1 205 241 19 0 chr11 111985149 111985203 -36798269 - L2 LINE L2 -5 3308 3254 3575 256 146 58 chr11 111985216 111985423 -36798049 - L1MDa LINE L1 -4255 2285 2098 1564 57 28 9 chr11 111985423 111985635 -36797837 - AluY SINE Alu -17 294 79 3575 256 146 58 chr11 111985635 111986773 -36796699 - L1MDa LINE L1 -4442 2098 690 225 0 0 0 chr11 111986773 111986798 -36796674 + (TG)n Simple_repeat Simple_repeat 1 25 0 3575 256 146 58 chr11 111986798 111987526 -36795946 - L1MDa LINE L1 -5850 690 28 1909 192 159 6 chr11 111987895 111988403 -36795069 - L1MC3 LINE L1 0 7805 7233 197 261 15 31 chr11 111988970 111989035 -36794437 + MIR SINE MIR 191 254 -8 191 59 0 29 chr11 111990318 111990352 -36793120 + (TTTTTA)n Simple_repeat Simple_repeat 4 36 0 43451 37 6 3 chr11 111990353 111996475 -36786997 - L1PA3 LINE L1 -3 6152 9 1790 182 3 0 chr11 111996509 111996805 -36786667 + AluSx SINE Alu 1 297 -15 206 361 60 0 chr11 111998116 111998199 -36785273 - L2 LINE L2 -1 3271 3184 323 302 231 5 chr11 111998265 111998477 -36784995 + MIR SINE MIR 3 262 0 2094 119 3 3 chr11 111999007 111999301 -36784171 - AluSx SINE Alu -18 294 1 2071 122 20 3 chr11 112000713 112001016 -36782456 - AluSx SINE Alu -4 308 1 426 328 98 6 chr11 112001095 112001437 -36782035 - L1MC/D LINE L1 -326 5795 5424 27 0 0 0 chr11 112001527 112001554 -36781918 + AT_rich Low_complexity Low_complexity 1 27 0 2084 114 0 0 chr11 112002895 112003209 -36780263 + AluSg SINE Alu 1 314 0 1412 311 145 32 chr11 112003780 112003880 -36779592 - L2 LINE L2 -7 3306 3219 186 43 0 0 chr11 112003880 112003903 -36779569 + (TG)n Simple_repeat Simple_repeat 1 23 0 1412 311 145 32 chr11 112003903 112004947 -36778525 - L2 LINE L2 -94 3219 2002 215 348 135 22 chr11 112004951 112005218 -36778254 - L2 LINE L2 -405 2909 2613 1147 181 86 23 chr11 112005277 112005498 -36777974 - AluJo SINE Alu -74 238 4 22 70 0 0 chr11 112006144 112006187 -36777285 + AT_rich Low_complexity Low_complexity 1 43 0 507 292 34 22 chr11 112006918 112007096 -36776376 - MLT1J LTR MaLR -261 250 71 22 0 0 0 chr11 112007390 112007412 -36776060 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr11 112007905 112007933 -36775539 + AT_rich Low_complexity Low_complexity 1 28 0 1095 323 159 34 chr11 112011039 112012042 -36771430 + L2 LINE L2 1813 2941 -373 180 240 87 58 chr11 112012160 112012264 -36771208 + L2 LINE L2 3112 3218 -95 2280 71 0 7 chr11 112012283 112012580 -36770892 + AluY SINE Alu 1 295 -16 22 35 0 0 chr11 112012932 112012961 -36770511 + AT_rich Low_complexity Low_complexity 1 29 0 547 305 71 105 chr11 112013156 112013507 -36769965 - L2 LINE L2 -3 3269 2931 289 287 173 20 chr11 112013540 112013690 -36769782 - L2 LINE L2 -976 2338 2166 813 256 27 22 chr11 112013920 112014143 -36769329 + MER58A DNA MER1_type 1 224 0 188 303 198 31 chr11 112014197 112014359 -36769113 + MIR SINE MIR 13 201 -61 1286 178 30 0 chr11 112014429 112014665 -36768807 - L1ME LINE L1 -404 5762 5520 263 369 126 9 chr11 112015385 112015498 -36767974 + MIR SINE MIR 20 118 -144 1350 143 54 0 chr11 112015498 112015722 -36767750 - MER46A DNA MER2_type 0 236 1 263 369 126 9 chr11 112015722 112015822 -36767650 + MIR SINE MIR 118 258 -4 25 31 0 0 chr11 112016547 112016579 -36766893 + AT_rich Low_complexity Low_complexity 1 32 0 345 287 56 49 chr11 112017307 112017450 -36766022 + MIR3 SINE MIR 17 160 -48 1864 114 0 4 chr11 112019294 112019548 -36763924 - AluSx SINE Alu -59 253 1 3782 239 73 37 chr11 112020182 112021387 -36762085 - L1MDb LINE L1 -4081 2325 1083 1731 176 0 23 chr11 112021387 112021688 -36761784 - AluJb SINE Alu -17 295 2 3782 239 73 37 chr11 112021688 112022009 -36761463 - L1MDb LINE L1 -5323 1083 775 21 0 0 0 chr11 112023881 112023902 -36759570 + AT_rich Low_complexity Low_complexity 1 21 0 230 242 38 102 chr11 112024795 112024952 -36758520 - MIR SINE MIR -46 216 70 2181 105 3 0 chr11 112025380 112025676 -36757796 - AluSq SINE Alu -16 297 1 23 54 0 0 chr11 112025715 112025752 -36757720 + AT_rich Low_complexity Low_complexity 1 37 0 496 281 143 22 chr11 112025760 112025957 -36757515 - MIR SINE MIR -32 230 11 208 377 127 32 chr11 112026343 112026720 -36756752 + L2 LINE L2 1480 1892 -1422 257 387 46 6 chr11 112026735 112026908 -36756564 + L2 LINE L2 3093 3272 0 48 18 0 0 chr11 112027145 112027200 -36756272 + AT_rich Low_complexity Low_complexity 1 55 0 1778 219 30 112 chr11 112028324 112029202 -36754270 - L1MC3 LINE L1 0 7785 6980 441 305 34 62 chr11 112029878 112030055 -36753417 + MIR SINE MIR 29 200 -62 24 77 0 0 chr11 112030289 112030341 -36753131 + AT_rich Low_complexity Low_complexity 1 52 0 266 335 71 90 chr11 112030616 112030828 -36752644 + L2 LINE L2 2968 3176 -96 2211 120 0 0 chr11 112030828 112031127 -36752345 - AluSx SINE Alu -13 299 1 266 335 71 90 chr11 112031127 112031180 -36752292 + L2 LINE L2 3176 3228 -44 269 143 0 32 chr11 112031338 112031401 -36752071 + (TGAA)n Simple_repeat Simple_repeat 2 62 0 26 0 0 0 chr11 112032451 112032477 -36750995 + AT_rich Low_complexity Low_complexity 1 26 0 32 43 0 0 chr11 112033719 112033765 -36749707 + AT_rich Low_complexity Low_complexity 1 46 0 229 255 0 0 chr11 112034720 112034767 -36748705 - L2 LINE L2 -1 3312 3266 26 64 0 0 chr11 112035124 112035171 -36748301 + AT_rich Low_complexity Low_complexity 1 47 0 337 297 198 0 chr11 112035389 112035500 -36747972 - MER5A DNA MER1_type 0 189 57 218 193 18 0 chr11 112035641 112035698 -36747774 + (TATATG)n Simple_repeat Simple_repeat 3 60 0 314 252 8 59 chr11 112036376 112036495 -36746977 - L1MC4 LINE L1 -1339 6703 6591 318 383 87 41 chr11 112037096 112037292 -36746180 + L2 LINE L2 3039 3243 -29 262 352 205 43 chr11 112038079 112038474 -36744998 + L2 LINE L2 2812 3270 -2 24 53 0 0 chr11 112039365 112039403 -36744069 + AT_rich Low_complexity Low_complexity 1 38 0 27 29 0 0 chr11 112039557 112039591 -36743881 + AT_rich Low_complexity Low_complexity 1 34 0 28 79 0 0 chr11 112042814 112042877 -36740595 + AT_rich Low_complexity Low_complexity 1 63 0 386 252 160 8 chr11 112044029 112044160 -36739312 + L2 LINE L2 3163 3313 0 365 311 90 87 chr11 112044397 112044718 -36738754 - L2 LINE L2 -15 3257 2936 430 155 95 122 chr11 112045066 112045147 -36738325 - Charlie4 DNA MER1_type 0 1961 1884 2068 142 0 3 chr11 112045147 112045458 -36738014 - AluSg SINE Alu 0 310 1 430 155 95 122 chr11 112045458 112045524 -36737948 - Charlie4 DNA MER1_type -77 1884 1818 180 0 0 0 chr11 112045762 112045782 -36737690 + (TG)n Simple_repeat Simple_repeat 1 20 0 37 23 0 0 chr11 112045842 112045886 -36737586 + AT_rich Low_complexity Low_complexity 1 44 0 30 69 0 0 chr11 112046147 112046205 -36737267 + AT_rich Low_complexity Low_complexity 1 58 0 21 0 0 0 chr11 112046488 112046509 -36736963 + AT_rich Low_complexity Low_complexity 1 21 0 279 175 16 0 chr11 112047075 112047138 -36736334 + MADE1 DNA Mariner 16 79 -1 2110 106 13 16 chr11 112047653 112047965 -36735507 - AluSp SINE Alu -2 311 1 2913 237 96 16 chr11 112048231 112048840 -36734632 - L1MC4 LINE L1 -748 5398 5203 2160 114 0 7 chr11 112048840 112049137 -36734335 - AluSx SINE Alu -16 296 2 2913 237 96 16 chr11 112049137 112049996 -36733476 - L1MC4 LINE L1 -943 5203 4414 405 321 89 20 chr11 112050146 112050392 -36733080 - L2 LINE L2 -458 2856 2594 278 324 57 9 chr11 112050484 112050589 -36732883 + L2 LINE L2 3204 3313 0 1881 173 3 0 chr11 112051561 112051868 -36731604 - AluJo SINE Alu -4 308 1 21 36 0 0 chr11 112052231 112052259 -36731213 + AT_rich Low_complexity Low_complexity 1 28 0 577 241 82 18 chr11 112052454 112052624 -36730848 - MER5A DNA MER1_type 0 189 9 22 0 0 0 chr11 112052704 112052726 -36730746 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr11 112053311 112053347 -36730125 + AT_rich Low_complexity Low_complexity 1 36 0 2204 89 3 0 chr11 112054931 112055247 -36728225 - AluSx SINE Alu 0 317 1 344 326 63 46 chr11 112055564 112055613 -36727859 + MER5B DNA MER1_type 1 48 -130 189 0 0 0 chr11 112055613 112055634 -36727838 + (CAA)n Simple_repeat Simple_repeat 2 22 0 344 326 63 46 chr11 112055634 112055759 -36727713 + MER5B DNA MER1_type 48 178 0 189 0 0 0 chr11 112056415 112056436 -36727036 + (T)n Simple_repeat Simple_repeat 1 21 0 221 346 40 40 chr11 112056891 112056992 -36726480 - L2 LINE L2 -4 3309 3209 2145 132 19 35 chr11 112058070 112058440 -36725032 - THE1B LTR MaLR 0 364 1 270 239 48 58 chr11 112058656 112058844 -36724628 - L1ME4a LINE L1 -59 6062 5877 252 284 25 0 chr11 112059209 112059290 -36724182 - HAL1 LINE L1 -860 1647 1565 452 193 42 50 chr11 112059733 112059852 -36723620 - L2 LINE L2 -3 3310 3193 7733 263 63 24 chr11 112059860 112061047 -36722425 - L2 LINE L2 -331 2982 1842 2086 125 3 0 chr11 112061047 112061342 -36722130 - AluSx SINE Alu -14 298 3 7733 263 63 24 chr11 112061342 112062609 -36720863 - L2 LINE L2 -1471 1842 432 33 43 0 0 chr11 112063553 112063600 -36719872 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr11 112063662 112063683 -36719789 + AT_rich Low_complexity Low_complexity 1 21 0 406 370 58 56 chr11 112064811 112065452 -36718020 - L2 LINE L2 -339 2975 2334 908 144 48 11 chr11 112066383 112066570 -36716902 + L1PB1 LINE L1 5955 6148 -3 25 65 0 0 chr11 112066628 112066674 -36716798 + AT_rich Low_complexity Low_complexity 1 46 0 7832 176 14 22 chr11 112067574 112067597 -36715875 - L1M LINE L1 -701 5420 5398 313 125 48 67 chr11 112067597 112067701 -36715771 - L1MA5 LINE L1 -1 6299 6198 7832 176 14 22 chr11 112067701 112068558 -36714914 - L1M LINE L1 -723 5398 4562 2073 130 7 0 chr11 112068558 112068865 -36714607 - AluSx SINE Alu -3 309 1 7832 176 14 22 chr11 112068865 112069601 -36713871 - L1M LINE L1 -1559 4562 3822 292 346 33 70 chr11 112070452 112070635 -36712837 + L2 LINE L2 2109 2280 -1034 1663 175 20 10 chr11 112070635 112070927 -36712545 + AluJb SINE Alu 1 295 -17 292 346 33 70 chr11 112070927 112071015 -36712457 + L2 LINE L2 2280 2370 -944 2016 231 84 9 chr11 112071307 112072338 -36711134 + L1ME1 LINE L1 4694 5976 -190 310 289 0 13 chr11 112073082 112073158 -36710314 + FLAM_A SINE Alu 2 76 -56 249 200 0 0 chr11 112073156 112073206 -36710266 + Alu SINE Alu 253 302 0 * 279 143 20 5 chr11 112073212 112073281 -36710191 + L1M2 LINE L1 5365 5428 -693 2097 118 0 13 chr11 112073302 112073606 -36709866 + AluSg SINE Alu 2 301 -9 21 0 0 0 chr11 112075006 112075027 -36708445 + AT_rich Low_complexity Low_complexity 1 21 0 215 214 0 0 chr11 112075116 112075158 -36708314 + GA-rich Low_complexity Low_complexity 1 42 0 1773 135 33 0 chr11 112075570 112075844 -36707628 + AluJb SINE Alu 18 300 -12 27 0 0 0 chr11 112077115 112077142 -36706330 + AT_rich Low_complexity Low_complexity 1 27 0 2296 103 0 0 chr11 112077356 112077658 -36705814 - AluSp SINE Alu -11 302 1 2218 92 3 3 chr11 112077724 112078016 -36705456 - AluSc SINE Alu -17 292 1 12301 190 21 3 chr11 112078235 112082184 -36701288 - L1PB1 LINE L1 -7 6860 2840 2898 124 13 20 chr11 112082181 112083169 -36700303 - L1PB1 LINE L1 -5104 1759 629 * 1037 168 10 5 chr11 112083165 112083362 -36700110 - L1PB1 LINE L1 -6663 200 3 * 236 170 0 0 chr11 112083380 112083427 -36700045 - HAL1 LINE L1 -197 2310 2264 251 227 36 27 chr11 112083448 112083558 -36699914 - HAL1 LINE L1 -423 2084 1974 1011 258 72 44 chr11 112083609 112083907 -36699565 - HAL1 LINE L1 -652 1855 1542 747 184 51 87 chr11 112083907 112084103 -36699369 + MER5A DNA MER1_type 1 189 0 1011 258 72 44 chr11 112084103 112084191 -36699281 - HAL1 LINE L1 -965 1542 1458 386 261 89 39 chr11 112084196 112084376 -36699096 - HAL1 LINE L1 -1630 877 689 733 165 0 16 chr11 112084744 112084865 -36698607 + FRAM SINE Alu 39 157 -19 235 180 80 0 chr11 112085036 112085086 -36698386 - L1MC/D LINE L1 -2163 5645 5592 262 258 0 0 chr11 112085833 112085899 -36697573 + CT-rich Low_complexity Low_complexity 1 66 0 422 353 77 21 chr11 112086177 112086412 -36697060 - MIR SINE MIR -12 250 3 963 186 5 38 chr11 112086829 112087039 -36696433 + MER3 DNA MER1_type 1 203 -6 191 339 17 0 chr11 112087292 112087351 -36696121 + L2 LINE L2 3254 3313 0 408 20 0 0 chr11 112087815 112087864 -36695608 + (TG)n Simple_repeat Simple_repeat 2 50 0 397 336 175 38 chr11 112088457 112089278 -36694194 + L2 LINE L2 1964 2897 -417 25 0 0 0 chr11 112090083 112090108 -36693364 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr11 112090521 112090546 -36692926 + AT_rich Low_complexity Low_complexity 1 25 0 30 27 0 0 chr11 112091514 112091551 -36691921 + AT_rich Low_complexity Low_complexity 1 37 0 1880 141 14 7 chr11 112092265 112092548 -36690924 + AluSx SINE Alu 1 285 -27 285 29 0 0 chr11 112092548 112092582 -36690890 + (CA)n Simple_repeat Simple_repeat 2 35 0 616 176 50 8 chr11 112092860 112092979 -36690493 - MER94 DNA DNA -4 130 7 782 221 29 6 chr11 112093439 112093611 -36689861 - MIR SINE MIR -67 195 20 324 0 0 0 chr11 112093620 112093656 -36689816 + (TG)n Simple_repeat Simple_repeat 2 37 0 185 400 21 14 chr11 112093882 112094027 -36689445 + L2 LINE L2 2241 2386 -928 617 375 57 39 chr11 112094415 112095055 -36688417 + L2 LINE L2 2355 3007 -265 23 0 0 0 chr11 112095533 112095556 -36687916 + AT_rich Low_complexity Low_complexity 1 23 0 562 296 11 17 chr11 112095762 112095938 -36687534 + MER97c DNA MER1_type? 3 177 -913 472 168 0 96 chr11 112096019 112096144 -36687328 - MER44D DNA MER2_type 0 705 593 1435 128 35 23 chr11 112096189 112096446 -36687026 - MER44D DNA MER2_type -79 530 1 1908 93 16 0 chr11 112096712 112096960 -36686512 - AluSc SINE Alu -21 288 37 492 18 0 0 chr11 112097234 112097291 -36686181 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 296 305 99 0 chr11 112097814 112097945 -36685527 + MIR SINE MIR 11 154 -108 222 269 151 54 chr11 112097956 112098049 -36685423 - L2 LINE L2 -42 3271 3170 34 24 0 0 chr11 112098459 112098500 -36684972 + AT_rich Low_complexity Low_complexity 1 41 0 291 210 17 30 chr11 112098541 112098850 -36684622 + (TA)n Simple_repeat Simple_repeat 1 304 0 * 305 140 18 0 chr11 112098829 112098886 -36684586 + (CA)n Simple_repeat Simple_repeat 2 59 0 22 35 0 0 chr11 112099176 112099205 -36684267 + AT_rich Low_complexity Low_complexity 1 29 0 2361 162 22 20 chr11 112099411 112099812 -36683660 - MER68 LTR ERV1 -160 402 1 739 220 156 11 chr11 112101463 112101649 -36681823 + MER20 DNA MER1_type 6 218 -1 27 0 0 0 chr11 112103180 112103207 -36680265 + AT_rich Low_complexity Low_complexity 1 27 0 785 231 77 8 chr11 112103330 112103564 -36679908 - L1ME3A LINE L1 -1 6169 5920 987 248 38 34 chr11 112103564 112104032 -36679440 + MER90 LTR ERV1 1 550 -64 526 239 113 9 chr11 112104106 112104328 -36679144 - L1M4 LINE L1 -2712 3434 3190 * 790 196 51 28 chr11 112104324 112104538 -36678934 - L1PA16 LINE L1 -7 6159 5941 * 1437 262 143 12 chr11 112104536 112105373 -36678099 - L1M4 LINE L1 -2940 3206 2260 4378 178 45 36 chr11 112105395 112105888 -36677584 - L1MA9 LINE L1 -38 6274 5787 1471 210 0 43 chr11 112105888 112106212 -36677260 - AluJo SINE Alu -2 310 1 4378 178 45 36 chr11 112106212 112106793 -36676679 - L1MA9 LINE L1 -525 5787 5185 333 194 14 0 chr11 112108440 112108512 -36674960 - L1MB8 LINE L1 -5 6173 6101 1086 160 34 5 chr11 112108514 112108720 -36674752 - L1M4 LINE L1 -538 5636 5425 2287 103 0 3 chr11 112108737 112109048 -36674424 - AluSg SINE Alu 0 310 1 21 57 0 0 chr11 112109097 112109132 -36674340 + AT_rich Low_complexity Low_complexity 1 35 0 1947 177 0 34 chr11 112110984 112111362 -36672110 + MLT1A1 LTR MaLR 1 365 0 24 0 0 0 chr11 112111793 112111817 -36671655 + AT_rich Low_complexity Low_complexity 1 24 0 315 277 78 57 chr11 112111947 112112088 -36671384 - L1ME4a LINE L1 0 6121 5978 1083 276 176 7 chr11 112112341 112112768 -36670704 - MLT1G LTR MaLR 0 590 92 26 0 0 0 chr11 112113524 112113550 -36669922 + AT_rich Low_complexity Low_complexity 1 26 0 782 202 104 33 chr11 112114248 112114431 -36669041 - MER20 DNA MER1_type -1 218 23 1972 141 3 0 chr11 112114597 112114896 -36668576 - AluSx SINE Alu -12 300 1 21 0 0 0 chr11 112114898 112114919 -36668553 + AT_rich Low_complexity Low_complexity 1 21 0 23473 99 11 21 chr11 112115130 112119013 -36664459 + L1PA8 LINE L1 763 4621 -1840 2485 94 3 8 chr11 112119013 112119371 -36664101 + L1PA8 LINE L1 6129 6487 0 8529 213 68 35 chr11 112119371 112121352 -36662120 - L1PA13 LINE L1 -4741 2046 1 242 330 41 10 chr11 112121406 112121503 -36661969 + MIR3 SINE MIR 103 202 -6 22 35 0 0 chr11 112121788 112121817 -36661655 + AT_rich Low_complexity Low_complexity 1 29 0 496 313 62 48 chr11 112121819 112122299 -36661173 - L1MC4a LINE L1 -1899 5909 5423 28 0 0 0 chr11 112122690 112122718 -36660754 + AT_rich Low_complexity Low_complexity 1 28 0 2148 118 7 0 chr11 112123891 112124187 -36659285 + AluSx SINE Alu 1 298 -14 957 114 0 161 chr11 112124239 112124475 -36658997 - Tigger7 DNA MER2_type 0 2487 2290 1381 191 32 20 chr11 112124492 112124555 -36658917 - Tigger7 DNA MER2_type -164 2323 2262 225 0 0 0 chr11 112124555 112124580 -36658892 + (TC)n Simple_repeat Simple_repeat 1 25 0 1381 191 32 20 chr11 112124580 112124859 -36658613 - Tigger7 DNA MER2_type -225 2262 30 207 239 43 0 chr11 112125655 112125701 -36657771 - MIR SINE MIR -49 213 166 6623 34 0 0 chr11 112125760 112126574 -36656898 + L1PA5 LINE L1 5352 6165 0 245 186 34 0 chr11 112127097 112127156 -36656316 + CT-rich Low_complexity Low_complexity 4 64 0 1721 182 10 0 chr11 112127158 112127466 -36656006 - AluJb SINE Alu -1 311 1 237 170 0 0 chr11 112128100 112128147 -36655325 + LTR66 LTR ERVL 395 441 -169 806 220 6 17 chr11 112128191 112128368 -36655104 + FRAM SINE Alu 1 175 -1 21 71 0 0 chr11 112128494 112128536 -36654936 + AT_rich Low_complexity Low_complexity 1 42 0 2137 92 3 0 chr11 112128790 112129096 -36654376 + AluSx SINE Alu 1 307 0 5187 152 23 32 chr11 112129149 112130112 -36653360 - L1MC1 LINE L1 0 6333 5380 281 205 173 32 chr11 112130502 112130658 -36652814 - L1ME4a LINE L1 -18 6103 5926 226 307 94 8 chr11 112130817 112130944 -36652528 - L1ME4a LINE L1 -463 5658 5521 638 341 16 0 chr11 112131460 112131709 -36651763 - L1MEd LINE L1 -5284 835 583 244 258 124 10 chr11 112131984 112132081 -36651391 - L1MEd LINE L1 -5874 245 138 713 279 1 56 chr11 112132289 112132537 -36650935 - MIR SINE MIR -1 261 27 2155 116 0 7 chr11 112132541 112132844 -36650628 - AluSq SINE Alu -12 301 1 182 333 29 0 chr11 112132890 112132959 -36650513 - L2 LINE L2 -27 3245 3175 22 56 0 0 chr11 112133182 112133218 -36650254 + AT_rich Low_complexity Low_complexity 1 36 0 218 222 0 19 chr11 112133499 112133553 -36649919 + CT-rich Low_complexity Low_complexity 2 54 0 21 36 0 0 chr11 112136689 112136717 -36646755 + AT_rich Low_complexity Low_complexity 1 28 0 756 269 40 4 chr11 112137533 112137782 -36645690 - MIR SINE MIR -3 259 2 2285 152 44 18 chr11 112137916 112138350 -36645122 + MER31A LTR ERV1 11 455 -30 1348 175 41 120 chr11 112139144 112139390 -36644082 - MER31B LTR ERV1 -82 384 183 2371 86 3 10 chr11 112139390 112139703 -36643769 - AluSx SINE Alu -1 311 1 1348 175 41 120 chr11 112139703 112139873 -36643599 - MER31B LTR ERV1 -283 183 1 742 164 8 0 chr11 112140998 112141120 -36642352 + FRAM SINE Alu 24 146 -30 1419 179 19 20 chr11 112141770 112142258 -36641214 - LTR8 LTR ERV1 0 691 153 2785 162 62 95 chr11 112142270 112142545 -36640927 + LTR8 LTR ERV1 2 284 -407 1456 151 21 104 chr11 112142545 112142883 -36640589 + AluYb8 SINE Alu 3 312 -6 2785 162 62 95 chr11 112142883 112143312 -36640160 + LTR8 LTR ERV1 284 683 -8 851 128 0 70 chr11 112143319 112143475 -36639997 - LTR8 LTR ERV1 -546 145 1 1589 198 0 0 chr11 112143478 112143756 -36639716 + AluJo SINE Alu 22 299 -13 667 265 65 0 chr11 112143811 112144011 -36639461 + MLT1C LTR MaLR 101 313 -154 839 128 21 86 chr11 112144015 112144202 -36639270 - MLT1C LTR MaLR -292 175 1 516 196 15 132 chr11 112144451 112144655 -36638817 - MLT1K LTR MaLR -15 573 394 245 241 0 0 chr11 112144666 112144720 -36638752 + CT-rich Low_complexity Low_complexity 2 55 0 1943 128 3 3 chr11 112145134 112145445 -36638027 + AluSx SINE Alu 1 311 0 9372 202 38 35 chr11 112145503 112146512 -36636960 - L1 LINE L1 -3466 4099 3095 1670 166 85 73 chr11 112146512 112146935 -36636537 + MSTA LTR MaLR 1 428 0 9372 202 38 35 chr11 112146935 112147773 -36635699 - L1 LINE L1 -4470 3095 2261 1941 109 25 11 chr11 112147773 112148058 -36635414 + AluSq SINE Alu 1 289 -24 9372 202 38 35 chr11 112148058 112149272 -36634200 - L1 LINE L1 -5304 2261 355 605 234 15 54 chr11 112149276 112149481 -36633991 + LTR4 LTR ERV1 4 200 -396 944 234 29 22 chr11 112149670 112149948 -36633524 + LTR4 LTR ERV1 317 596 0 1487 187 77 18 chr11 112149948 112150274 -36633198 - L1 LINE L1 -7209 356 12 772 294 169 82 chr11 112150506 112151372 -36632100 + L2 LINE L2 1403 2447 -867 1793 161 68 0 chr11 112151372 112151694 -36631778 - MER7A DNA MER2_type 0 346 5 772 294 169 82 chr11 112151694 112152267 -36631205 + L2 LINE L2 2447 2968 -346 1235 224 203 76 chr11 112153315 112153841 -36629631 - MLT1E2 LTR MaLR -31 593 1 244 313 15 15 chr11 112154708 112154775 -36628697 - L2 LINE L2 -52 3220 3154 26 30 0 0 chr11 112154886 112154919 -36628553 + AT_rich Low_complexity Low_complexity 1 33 0 306 252 223 38 chr11 112154934 112155378 -36628094 - L1ME4a LINE L1 -21 6100 5575 370 370 36 0 chr11 112156176 112156341 -36627131 + MIR SINE MIR 79 249 -13 302 320 0 0 chr11 112156396 112156474 -36626998 - MIR SINE MIR -113 149 72 438 259 42 21 chr11 112156778 112156921 -36626551 + MIR SINE MIR 117 262 0 22 70 0 0 chr11 112156987 112157030 -36626442 + AT_rich Low_complexity Low_complexity 1 43 0 32 0 0 0 chr11 112157039 112157071 -36626401 + AT_rich Low_complexity Low_complexity 1 32 0 1939 187 53 61 chr11 112157317 112157826 -36625646 + MLT1D LTR MaLR 1 505 0 333 280 76 0 chr11 112158208 112158340 -36625132 + MER91B DNA MER1_type 1 142 -48 23 33 0 0 chr11 112158817 112158847 -36624625 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr11 112159542 112159563 -36623909 + (TTAA)n Simple_repeat Simple_repeat 2 22 0 2055 134 0 3 chr11 112159901 112160192 -36623280 - AluSx SINE Alu -22 290 1 26 0 0 0 chr11 112160352 112160378 -36623094 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr11 112160703 112160725 -36622747 + AT_rich Low_complexity Low_complexity 1 22 0 214 371 109 71 chr11 112160773 112161123 -36622349 - L2 LINE L2 0 3272 2910 522 285 232 0 chr11 112161323 112161530 -36621942 - MIR SINE MIR 0 262 8 1047 320 159 37 chr11 112162016 112163022 -36620450 + L2 LINE L2 1813 2941 -373 189 231 87 58 chr11 112163141 112163245 -36620227 + L2 LINE L2 3112 3218 -95 2280 71 0 7 chr11 112163264 112163561 -36619911 + AluY SINE Alu 1 295 -16 22 35 0 0 chr11 112163913 112163942 -36619530 + AT_rich Low_complexity Low_complexity 1 29 0 547 305 71 105 chr11 112164137 112164488 -36618984 - L2 LINE L2 -3 3269 2931 289 287 173 20 chr11 112164521 112164671 -36618801 - L2 LINE L2 -976 2338 2166 813 256 27 22 chr11 112164901 112165124 -36618348 + MER58A DNA MER1_type 1 224 0 188 303 198 31 chr11 112165178 112165340 -36618132 + MIR SINE MIR 13 201 -61 1286 178 30 0 chr11 112165410 112165646 -36617826 - L1ME LINE L1 -404 5762 5520 218 368 0 0 chr11 112166366 112166438 -36617034 + MIR SINE MIR 20 92 -116 658 167 35 0 chr11 112166479 112166593 -36616879 - MER46A DNA MER2_type 0 236 119 1201 194 0 53 chr11 112166601 112166864 -36616608 + AluJo SINE Alu 62 310 -2 1529 228 79 30 chr11 112166888 112167357 -36616115 + L1MA9 LINE L1 5783 6274 -38 1437 262 143 12 chr11 112167379 112168216 -36615256 + L1M4 LINE L1 2260 3206 -2940 790 196 51 28 chr11 112168214 112168428 -36615044 + L1PA16 LINE L1 5941 6159 -7 * 526 239 113 9 chr11 112168424 112168646 -36614826 + L1M4 LINE L1 3190 3434 -2712 * 987 248 38 34 chr11 112168720 112169188 -36614284 - MER90 LTR ERV1 -64 550 1 785 231 77 8 chr11 112169188 112169422 -36614050 + L1ME3A LINE L1 5920 6169 -1 27 0 0 0 chr11 112169545 112169572 -36613900 + AT_rich Low_complexity Low_complexity 1 27 0 739 220 156 11 chr11 112171103 112171289 -36612183 - MER20 DNA MER1_type -1 218 6 2361 162 22 20 chr11 112172941 112173342 -36610130 + MER68 LTR ERV1 1 402 -160 2300 94 0 3 chr11 112173680 112173978 -36609494 - AluSq SINE Alu -16 297 1 198 256 0 0 chr11 112174021 112174064 -36609408 + MIR SINE MIR 220 262 0 228 88 29 0 chr11 112174341 112174375 -36609097 - MADE1 DNA Mariner -43 37 3 2199 101 53 28 chr11 112174487 112174842 -36608630 - THE1B LTR MaLR 0 364 1 314 223 10 68 chr11 112175626 112175729 -36607743 - MLT1K LTR MaLR 0 588 492 191 86 0 29 chr11 112175930 112175965 -36607507 + (TA)n Simple_repeat Simple_repeat 2 35 0 216 0 0 0 chr11 112175967 112175991 -36607481 + (CA)n Simple_repeat Simple_repeat 2 25 0 419 342 63 1 chr11 112178038 112178230 -36605242 - MIR SINE MIR -32 230 26 2272 140 2 34 chr11 112178396 112178811 -36604661 - L1MA4 LINE L1 -5 6295 5894 1177 115 0 0 chr11 112178911 112179067 -36604405 - AluSg/x SINE Alu -13 297 142 2389 82 3 0 chr11 112179067 112179371 -36604101 - AluSp SINE Alu -8 305 1 21 0 0 0 chr11 112180253 112180274 -36603198 + AT_rich Low_complexity Low_complexity 1 21 0 1918 117 6 69 chr11 112180468 112180801 -36602671 + AluSx SINE Alu 1 312 0 14407 155 27 4 chr11 112181124 112183507 -36599965 + L1M1 LINE L1 480 2917 -4648 1012 182 23 0 chr11 112183506 112183726 -36599746 - L1 LINE L1 -1771 4375 4151 * 4269 156 65 18 chr11 112184030 112184975 -36598497 - L1MB2 LINE L1 0 6171 5178 1742 154 6 71 chr11 112185171 112185496 -36597976 - AluJo SINE Alu -6 306 3 188 346 67 19 chr11 112185717 112185821 -36597651 + L2 LINE L2 3149 3257 -15 21 36 0 0 chr11 112186073 112186101 -36597371 + AT_rich Low_complexity Low_complexity 1 28 0 204 228 0 89 chr11 112186194 112186295 -36597177 + T-rich Low_complexity Low_complexity 4 95 0 1851 129 6 69 chr11 112186671 112187004 -36596468 - AluSx SINE Alu 0 312 1 238 61 0 0 chr11 112187266 112187299 -36596173 - Alu SINE Alu -100 33 1 3294 171 47 38 chr11 112187321 112187916 -36595556 - L1 LINE L1 -2104 5461 4873 186 43 0 0 chr11 112187916 112187939 -36595533 + (TG)n Simple_repeat Simple_repeat 2 24 0 1624 191 33 0 chr11 112187942 112188215 -36595257 - AluJb SINE Alu -30 282 1 3294 171 47 38 chr11 112188215 112188428 -36595044 - L1 LINE L1 -2693 4872 4642 2392 226 71 11 chr11 112188414 112189119 -36594353 - L1 LINE L1 -3231 4334 3588 * 1262 122 24 24 chr11 112189122 112189327 -36594145 + THE1C LTR MaLR 1 205 -170 455 134 0 0 chr11 112189329 112189396 -36594076 + THE1C LTR MaLR 362 428 0 10046 112 48 4 chr11 112189396 112190910 -36592562 + THE1C-int LTR MaLR 1 1580 0 2007 137 50 19 chr11 112190910 112191274 -36592198 + THE1C LTR MaLR 1 375 0 463 271 115 22 chr11 112191274 112191780 -36591692 - L1 LINE L1 -3976 3589 3035 2526 195 58 14 chr11 112191783 112192419 -36591053 - L1M2 LINE L1 -4255 2594 1931 23 54 0 0 chr11 112192453 112192490 -36590982 + AT_rich Low_complexity Low_complexity 1 37 0 2002 122 11 3 chr11 112192730 112193017 -36590455 - AluSx SINE Alu -23 289 1 21 36 0 0 chr11 112193124 112193152 -36590320 + AT_rich Low_complexity Low_complexity 1 28 0 252 320 137 35 chr11 112193684 112193968 -36589504 - HAL1 LINE L1 -845 1662 1350 317 137 78 0 chr11 112195179 112195230 -36588242 - HY1 scRNA scRNA -57 55 1 232 324 0 0 chr11 112195319 112195387 -36588085 - L2 LINE L2 -1 3312 3245 217 284 112 37 chr11 112195461 112195543 -36587929 - L2 LINE L2 -181 3091 2994 1792 161 3 7 chr11 112195543 112195842 -36587630 - AluSx SINE Alu -14 298 1 217 284 112 37 chr11 112195842 112195893 -36587579 - L2 LINE L2 -278 2994 2948 203 0 37 0 chr11 112196409 112196436 -36587036 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 2223 90 0 0 chr11 112196445 112196723 -36586749 - AluSg1 SINE Alu -27 282 5 621 255 162 20 chr11 112197812 112198114 -36585358 - LTR50 LTR ERVL -14 781 437 347 263 113 0 chr11 112198185 112198318 -36585154 - LTR50 LTR ERVL -590 205 58 2376 84 0 3 chr11 112198455 112198754 -36584718 - AluY SINE Alu -13 298 1 471 254 140 43 chr11 112198754 112199094 -36584378 - L1MEd LINE L1 -3104 3025 2649 319 254 127 14 chr11 112199194 112199414 -36584058 - L1MEd LINE L1 -3693 2436 2192 24 53 0 0 chr11 112199458 112199496 -36583976 + AT_rich Low_complexity Low_complexity 1 38 0 520 239 92 42 chr11 112200162 112200422 -36583050 - L1MEd LINE L1 -4874 1245 973 1852 241 94 23 chr11 112200472 112201044 -36582428 - LTR68 LTR ERV1 -127 613 1 42219 52 5 1 chr11 112201480 112207614 -36575858 - L1PA4 LINE L1 0 6155 2 180 0 0 0 chr11 112208153 112208173 -36575299 + (A)n Simple_repeat Simple_repeat 1 20 0 225 0 0 0 chr11 112208313 112208338 -36575134 + (A)n Simple_repeat Simple_repeat 1 25 0 208 304 89 0 chr11 112208398 112208477 -36574995 + L2 LINE L2 2223 2308 -1006 585 319 222 15 chr11 112208562 112209035 -36574437 + L2 LINE L2 2324 2894 -420 653 330 43 9 chr11 112209329 112209559 -36573913 + MIR SINE MIR 20 257 -5 490 288 88 45 chr11 112209997 112210417 -36573055 - L1MC4a LINE L1 -1833 5975 5538 342 348 43 0 chr11 112210869 112211007 -36572465 + L2 LINE L2 2205 2348 -966 286 297 42 42 chr11 112211016 112211134 -36572338 + L2 LINE L2 3189 3306 -7 320 323 34 53 chr11 112211169 112211435 -36572037 + L2 LINE L2 2354 2614 -700 384 270 87 71 chr11 112211471 112211667 -36571805 + L2 LINE L2 3115 3313 0 21 57 0 0 chr11 112212403 112212438 -36571034 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr11 112212505 112212526 -36570946 + AT_rich Low_complexity Low_complexity 1 21 0 620 298 92 88 chr11 112212952 112213794 -36569678 + L2 LINE L2 2316 3298 -15 27 29 0 0 chr11 112213877 112213911 -36569561 + AT_rich Low_complexity Low_complexity 1 34 0 1592 242 97 44 chr11 112213912 112214478 -36568994 - L1ME3A LINE L1 -7 6163 5568 329 214 70 134 chr11 112214516 112214703 -36568769 - L1ME3A LINE L1 -27 6143 5969 190 346 79 10 chr11 112214793 112214894 -36568578 - MIR SINE MIR -39 223 116 403 242 40 91 chr11 112215157 112215355 -36568117 + MIR SINE MIR 75 262 0 1612 96 9 0 chr11 112215980 112216198 -36567274 + AluSg/x SINE Alu 89 308 -4 350 274 84 56 chr11 112216450 112216629 -36566843 + MIR SINE MIR 33 216 -46 326 259 183 38 chr11 112217886 112218017 -36565455 - L2 LINE L2 0 3313 3164 815 236 48 20 chr11 112218093 112218343 -36565129 - L1ME3A LINE L1 -13 6157 5901 267 246 31 0 chr11 112218600 112218665 -36564807 + (CATA)n Simple_repeat Simple_repeat 2 68 0 210 37 0 0 chr11 112219234 112219261 -36564211 + (TA)n Simple_repeat Simple_repeat 2 28 0 25 0 0 0 chr11 112219898 112219923 -36563549 + AT_rich Low_complexity Low_complexity 1 25 0 5764 109 13 11 chr11 112219935 112221351 -36562121 - L1PA15 LINE L1 0 6165 4785 1248 302 34 29 chr11 112221383 112221995 -36561477 - L1PA12 LINE L1 -4785 2796 2182 301 216 31 21 chr11 112222238 112222335 -36561137 - L1PA12 LINE L1 -5399 2182 2085 1128 318 31 34 chr11 112222440 112223054 -36560418 - L1PA12 LINE L1 -6175 1399 788 304 207 0 0 chr11 112223706 112223764 -36559708 + LTR65 LTR ERV1 338 395 -274 297 266 95 43 chr11 112226721 112226905 -36556567 + L1MCc LINE L1 35 563 -5859 1179 241 72 36 chr11 112227233 112227550 -36555922 + L1MCc LINE L1 1123 1427 -5436 2213 80 3 26 chr11 112227550 112227852 -36555620 + AluY SINE Alu 1 295 -16 1179 241 72 36 chr11 112227852 112228162 -36555310 + L1MCc LINE L1 1427 1976 -4887 367 228 111 111 chr11 112228166 112228490 -36554982 + L1MCc LINE L1 1871 2632 -4310 396 145 0 0 chr11 112228490 112228552 -36554920 + AluS SINE Alu 1 62 -240 509 103 0 0 chr11 112228652 112228720 -36554752 - L1M1 LINE L1 -612 5690 5623 * 4411 162 27 8 chr11 112228714 112228797 -36554675 - L1M1 LINE L1 -591 5709 5629 3026 129 38 10 chr11 112228797 112229294 -36554178 + MER9 LTR ERVK 1 511 0 4411 162 27 8 chr11 112229294 112230415 -36553057 - L1M1 LINE L1 -671 5629 4479 3839 255 36 29 chr11 112230415 112232140 -36551332 - L1M1 LINE L1 -5136 2429 10 426 353 29 18 chr11 112233320 112233490 -36549982 + MER5A DNA MER1_type 7 178 -11 969 186 0 0 chr11 112233822 112233978 -36549494 + AluJb SINE Alu 86 241 -71 282 211 0 0 chr11 112233978 112234030 -36549442 + LTR30 LTR ERV1 1 52 -670 2269 125 22 116 chr11 112234030 112234387 -36549085 + LTR12 LTR ERV1 53 301 -413 2066 66 0 8 chr11 112234387 112234646 -36548826 - AluY SINE Alu -18 293 37 2269 125 22 116 chr11 112234646 112234809 -36548663 + LTR12 LTR ERV1 301 478 -236 * 4931 117 12 20 chr11 112234785 112235546 -36547926 + HERV9 LTR ERV1 54 808 -7591 270 171 0 0 chr11 112235552 112235593 -36547879 + AluJb SINE Alu 240 280 -22 198 0 0 0 chr11 112235597 112235619 -36547853 + (TAAAA)n Simple_repeat Simple_repeat 4 25 0 590 318 104 11 chr11 112236220 112236578 -36546894 + L2 LINE L2 2741 3121 -192 745 268 52 37 chr11 112236952 112237277 -36546195 - L1ME3A LINE L1 -222 5948 5619 551 312 131 41 chr11 112237064 112237506 -36545966 - L1MB3 LINE L1 -356 5827 5346 * 301 266 39 47 chr11 112237506 112237721 -36545751 - L2 LINE L2 -416 2898 2613 470 270 32 10 chr11 112238567 112238801 -36544671 + L1MC4 LINE L1 7012 7252 -737 840 282 84 20 chr11 112238828 112239464 -36544008 + L1MC5 LINE L1 7246 7862 -99 22 35 0 0 chr11 112239531 112239560 -36543912 + AT_rich Low_complexity Low_complexity 1 29 0 1818 258 26 33 chr11 112240174 112240612 -36542860 - L1ME1 LINE L1 -5 6421 5987 2486 105 16 5 chr11 112240612 112240983 -36542489 + THE1C LTR MaLR 1 375 0 1818 258 26 33 chr11 112240983 112241149 -36542323 - L1ME1 LINE L1 -439 5987 5821 26 30 0 0 chr11 112241149 112241182 -36542290 + AT_rich Low_complexity Low_complexity 1 33 0 309 307 63 21 chr11 112242246 112242435 -36541037 - L1ME1 LINE L1 -1955 4451 4255 1427 219 29 53 chr11 112242438 112242813 -36540659 - MLT1B LTR MaLR 0 390 25 281 269 143 25 chr11 112242905 112243119 -36540353 - MLT1H LTR MaLR -24 525 265 600 257 74 25 chr11 112243182 112243384 -36540088 - MLT1H LTR MaLR -335 214 3 598 272 124 66 chr11 112243576 112244560 -36538912 - L1ME1 LINE L1 -2413 3993 2929 4387 99 16 0 chr11 112244560 112245176 -36538296 + L1PA10 LINE L1 5526 6151 -17 598 272 124 66 chr11 112245176 112245367 -36538105 - L1ME1 LINE L1 -3477 2929 2750 426 39 0 0 chr11 112245396 112245448 -36538024 + MADE1 DNA Mariner 1 52 -28 2226 111 0 0 chr11 112245775 112246081 -36537391 + AluSg SINE Alu 1 306 -4 423 283 45 38 chr11 112246662 112246965 -36536507 - L1ME1 LINE L1 -4862 1534 1325 1369 231 20 14 chr11 112247594 112247888 -36535584 - AluJo SINE Alu -16 296 1 1885 147 11 0 chr11 112249550 112249835 -36533637 + AluJo SINE Alu 2 289 -23 2160 132 0 0 chr11 112251533 112251843 -36531629 - AluSx SINE Alu -2 310 1 625 196 101 119 chr11 112252175 112252394 -36531078 + MIR SINE MIR 28 242 -20 773 307 140 36 chr11 112252524 112252999 -36530473 - L2 LINE L2 -2 3311 2743 2077 178 0 14 chr11 112252999 112253369 -36530103 + MLT1A1 LTR MaLR 1 365 0 773 307 140 36 chr11 112253369 112253586 -36529886 - L2 LINE L2 -570 2743 2550 805 315 65 19 chr11 112253678 112254091 -36529381 - L2 LINE L2 -1265 2049 1618 291 54 0 0 chr11 112254191 112254228 -36529244 + (T)n Simple_repeat Simple_repeat 1 37 0 2219 88 0 3 chr11 112254626 112254932 -36528540 + AluSx SINE Alu 1 305 0 1235 245 12 53 chr11 112256182 112256599 -36526873 - L1ME1 LINE L1 -5238 1171 772 2147 108 3 3 chr11 112256949 112257245 -36526227 + AluSp SINE Alu 3 298 -15 21 71 0 0 chr11 112258330 112258372 -36525100 + AT_rich Low_complexity Low_complexity 1 42 0 633 292 110 5 chr11 112258457 112258676 -36524796 + MIR SINE MIR 21 262 0 4791 176 41 25 chr11 112259338 112260756 -36522716 - L1MA6 LINE L1 -15 6285 4845 1362 199 17 40 chr11 112260762 112261059 -36522413 + L1M1 LINE L1 19 308 -7257 758 164 8 0 chr11 112312918 112313040 -36470432 - FRAM SINE Alu -30 146 24 35410 55 7 1 chr11 112313244 112317746 -36465726 - L1P LINE L1 -1619 4527 2 438 259 42 21 chr11 112318156 112318299 -36465173 + MIR SINE MIR 117 262 0 22 70 0 0 chr11 112318365 112318408 -36465064 + AT_rich Low_complexity Low_complexity 1 43 0 32 0 0 0 chr11 112318417 112318449 -36465023 + AT_rich Low_complexity Low_complexity 1 32 0 1951 187 53 61 chr11 112318695 112319204 -36464268 + MLT1D LTR MaLR 1 505 0 336 280 76 0 chr11 112319586 112319718 -36463754 + MER91B DNA MER1_type 1 142 -48 23 33 0 0 chr11 112320195 112320225 -36463247 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr11 112320920 112320941 -36462531 + (TTAA)n Simple_repeat Simple_repeat 3 23 0 2087 134 0 3 chr11 112321279 112321570 -36461902 - AluSx SINE Alu -22 290 1 26 0 0 0 chr11 112321730 112321756 -36461716 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr11 112322081 112322103 -36461369 + AT_rich Low_complexity Low_complexity 1 22 0 197 371 109 71 chr11 112322151 112322501 -36460971 - L2 LINE L2 0 3272 2910 515 285 232 0 chr11 112322701 112322908 -36460564 - MIR SINE MIR 0 262 8 4257 155 65 18 chr11 112323385 112324330 -36459142 - L1MB2 LINE L1 0 6171 5178 1720 155 6 71 chr11 112324526 112324848 -36458624 - AluJo SINE Alu -9 303 3 188 346 67 19 chr11 112325069 112325173 -36458299 + L2 LINE L2 3149 3257 -15 21 36 0 0 chr11 112325425 112325453 -36458019 + AT_rich Low_complexity Low_complexity 1 28 0 401 289 95 41 chr11 112325461 112325776 -36457696 - L1M4 LINE L1 -2882 4683 4352 1932 120 6 65 chr11 112326023 112326348 -36457124 - AluSx SINE Alu -6 306 1 21 0 0 0 chr11 112326542 112326563 -36456909 + AT_rich Low_complexity Low_complexity 1 21 0 470 273 8 0 chr11 112327511 112327632 -36455840 + MLT1C LTR MaLR 192 313 -154 839 128 21 86 chr11 112327636 112327823 -36455649 - MLT1C LTR MaLR -292 175 1 508 176 25 142 chr11 112328072 112328276 -36455196 - MLT1K LTR MaLR -15 573 394 245 241 0 0 chr11 112328287 112328341 -36455131 + CT-rich Low_complexity Low_complexity 2 55 0 1954 131 3 3 chr11 112328755 112329066 -36454406 + AluSx SINE Alu 1 311 0 9302 202 39 37 chr11 112329124 112330133 -36453339 - L1M4 LINE L1 -3466 4099 3094 1694 166 85 73 chr11 112330133 112330556 -36452916 + MSTA LTR MaLR 1 428 0 9302 202 39 37 chr11 112330556 112331394 -36452078 - L1M4 LINE L1 -4471 3094 2260 2010 109 25 7 chr11 112331394 112331678 -36451794 + AluSq SINE Alu 1 289 -24 9302 202 39 37 chr11 112331678 112332892 -36450580 - L1M4 LINE L1 -5305 2260 355 605 234 15 54 chr11 112332896 112333101 -36450371 + LTR4 LTR ERV1 4 200 -396 955 234 29 22 chr11 112333290 112333568 -36449904 + LTR4 LTR ERV1 317 596 0 1500 187 77 18 chr11 112333568 112333894 -36449578 - L1M4 LINE L1 -7209 356 12 998 283 164 73 chr11 112334126 112334992 -36448480 + L2 LINE L2 1403 2448 -866 1798 161 68 0 chr11 112334992 112335314 -36448158 - MER7A DNA MER2_type 0 346 5 998 283 164 73 chr11 112335314 112335887 -36447585 + L2 LINE L2 2448 2968 -346 1236 224 203 76 chr11 112336935 112337461 -36446011 - MLT1E2 LTR MaLR -31 593 1 245 313 15 15 chr11 112338328 112338395 -36445077 - L2 LINE L2 -52 3220 3154 26 30 0 0 chr11 112338506 112338539 -36444933 + AT_rich Low_complexity Low_complexity 1 33 0 311 264 80 43 chr11 112338554 112338717 -36444755 - L1ME4a LINE L1 -21 6100 5932 246 278 75 27 chr11 112338811 112338998 -36444474 - L1ME4a LINE L1 -351 5770 5575 411 312 73 26 chr11 112339962 112340154 -36443318 - MIR SINE MIR -32 230 26 4055 137 1 23 chr11 112340320 112341008 -36442464 - L1MA4 LINE L1 -5 6295 5623 4411 162 27 7 chr11 112341009 112341085 -36442387 - L1M1 LINE L1 -597 5703 5630 3012 131 38 10 chr11 112341085 112341582 -36441890 + MER9 LTR ERVK 1 511 0 4411 162 27 7 chr11 112341582 112342703 -36440769 - L1M1 LINE L1 -670 5630 4479 3839 256 36 29 chr11 112342703 112344428 -36439044 - L1M1 LINE L1 -5136 2429 10 426 353 29 18 chr11 112345610 112345780 -36437692 + MER5A DNA MER1_type 7 178 -11 983 179 0 0 chr11 112346112 112346268 -36437204 + AluJb SINE Alu 86 241 -71 282 211 0 0 chr11 112346268 112346320 -36437152 + LTR30 LTR ERV1 1 52 -670 2275 127 22 116 chr11 112346320 112346677 -36436795 + LTR12 LTR ERV1 53 301 -413 2113 66 0 8 chr11 112346677 112346936 -36436536 - AluY SINE Alu -18 293 37 2275 127 22 116 chr11 112346936 112347099 -36436373 + LTR12 LTR ERV1 301 478 -236 * 4959 118 12 20 chr11 112347075 112347836 -36435636 + HERV9 LTR ERV1 54 808 -7591 276 171 0 0 chr11 112347842 112347883 -36435589 + AluJb SINE Alu 240 280 -22 198 0 0 0 chr11 112347887 112347909 -36435563 + (TAAAA)n Simple_repeat Simple_repeat 4 25 0 605 321 104 11 chr11 112348510 112348868 -36434604 + L2 LINE L2 2741 3121 -192 733 268 52 37 chr11 112349242 112349567 -36433905 - L1ME3A LINE L1 -222 5948 5619 521 312 131 41 chr11 112349354 112349796 -36433676 - L1MB3 LINE L1 -356 5827 5346 * 313 266 39 47 chr11 112349796 112350011 -36433461 - L2 LINE L2 -416 2898 2613 455 272 32 10 chr11 112350857 112351091 -36432381 + L1MC4 LINE L1 7012 7252 -737 788 283 84 20 chr11 112351118 112351754 -36431718 + L1MC5 LINE L1 7246 7862 -99 22 35 0 0 chr11 112351821 112351850 -36431622 + AT_rich Low_complexity Low_complexity 1 29 0 1232 252 16 48 chr11 112352334 112352608 -36430864 - L1ME1 LINE L1 -179 6247 5991 2357 124 16 8 chr11 112352608 112352980 -36430492 + THE1C LTR MaLR 1 375 0 1232 252 16 48 chr11 112352980 112353146 -36430326 - L1ME1 LINE L1 -435 5991 5821 26 30 0 0 chr11 112353146 112353179 -36430293 + AT_rich Low_complexity Low_complexity 1 33 0 313 302 63 21 chr11 112354243 112354432 -36429040 - L1ME1 LINE L1 -1955 4451 4255 1416 221 29 53 chr11 112354435 112354810 -36428662 - MLT1B LTR MaLR 0 390 25 279 260 154 27 chr11 112354902 112355128 -36428344 - MLT1H LTR MaLR -24 525 249 600 257 74 25 chr11 112355179 112355381 -36428091 - MLT1H LTR MaLR -335 214 3 559 278 129 56 chr11 112355573 112356553 -36426919 - L1ME1 LINE L1 -2413 3993 2943 4430 97 16 0 chr11 112356557 112357173 -36426299 + L1PA10 LINE L1 5526 6151 -17 425 39 0 0 chr11 112357393 112357445 -36426027 + MADE1 DNA Mariner 1 52 -28 2264 112 0 0 chr11 112357772 112358077 -36425395 + AluSg SINE Alu 1 305 -5 377 288 45 35 chr11 112358662 112358961 -36424511 - L1ME1 LINE L1 -4862 1534 1325 1436 224 20 14 chr11 112359590 112359884 -36423588 - AluJo SINE Alu -16 296 1 1915 147 11 0 chr11 112361542 112361827 -36421645 + AluJo SINE Alu 2 289 -23 2211 129 0 0 chr11 112363525 112363836 -36419636 - AluSx SINE Alu -1 311 1 619 196 101 119 chr11 112364168 112364387 -36419085 + MIR SINE MIR 28 242 -20 788 306 140 34 chr11 112364517 112364992 -36418480 - L2 LINE L2 -2 3311 2742 2140 173 0 14 chr11 112364992 112365362 -36418110 + MLT1A1 LTR MaLR 1 365 0 788 306 140 34 chr11 112365362 112365578 -36417894 - L2 LINE L2 -571 2742 2550 779 317 65 19 chr11 112365670 112366083 -36417389 - L2 LINE L2 -1265 2049 1618 258 32 0 0 chr11 112366183 112366214 -36417258 + (T)n Simple_repeat Simple_repeat 1 31 0 2248 88 0 3 chr11 112366612 112366918 -36416554 + AluSx SINE Alu 1 305 0 1214 237 17 56 chr11 112368178 112368592 -36414880 - L1ME1 LINE L1 -5238 1171 774 2190 108 3 3 chr11 112368944 112369241 -36414231 + AluSp SINE Alu 3 299 -14 21 71 0 0 chr11 112370326 112370368 -36413104 + AT_rich Low_complexity Low_complexity 1 42 0 640 288 110 5 chr11 112370453 112370672 -36412800 + MIR SINE MIR 21 262 0 4767 176 41 25 chr11 112371333 112372751 -36410721 - L1MA6 LINE L1 -15 6987 5547 16420 165 29 7 chr11 112372757 112375594 -36407878 + L1M1 LINE L1 19 2917 -4648 1436 175 17 17 chr11 112375593 112375890 -36407582 - L1MA6 LINE L1 -1771 5077 4781 * 243 0 0 0 chr11 112375893 112375920 -36407552 + (T)n Simple_repeat Simple_repeat 1 27 0 5147 198 242 24 chr11 112376028 112376325 -36407147 - L1 LINE L1 -1771 5794 5563 1947 103 76 0 chr11 112376325 112376615 -36406857 - AluSx SINE Alu 0 312 1 5147 198 242 24 chr11 112376615 112377232 -36406240 - L1 LINE L1 -2002 5563 5082 186 43 0 0 chr11 112377232 112377255 -36406217 + (TG)n Simple_repeat Simple_repeat 2 24 0 1611 194 33 0 chr11 112377258 112377531 -36405941 - AluJb SINE Alu -30 282 1 5147 198 242 24 chr11 112377531 112378423 -36405049 - L1 LINE L1 -2484 5081 3588 1256 122 24 24 chr11 112378426 112378631 -36404841 + THE1C LTR MaLR 1 205 -170 440 149 0 0 chr11 112378633 112378700 -36404772 + THE1C LTR MaLR 362 428 0 10053 111 48 4 chr11 112378700 112380214 -36403258 + THE1C-int LTR MaLR 1 1580 0 2045 132 50 19 chr11 112380214 112380578 -36402894 + THE1C LTR MaLR 1 375 0 463 271 115 22 chr11 112380578 112381084 -36402388 - L1 LINE L1 -3976 3589 3035 2509 196 58 14 chr11 112381087 112381723 -36401749 - L1MA6 LINE L1 -4255 3311 2648 23 54 0 0 chr11 112381757 112381794 -36401678 + AT_rich Low_complexity Low_complexity 1 37 0 2001 128 7 3 chr11 112382034 112382322 -36401150 - AluSx SINE Alu -23 289 1 232 324 137 35 chr11 112382992 112383276 -36400196 - HAL1 LINE L1 -845 1662 1350 317 137 78 0 chr11 112384487 112384538 -36398934 - HY1 scRNA scRNA -57 55 1 232 324 0 0 chr11 112384627 112384695 -36398777 - L2 LINE L2 -1 3312 3245 217 284 112 37 chr11 112384769 112384851 -36398621 - L2 LINE L2 -181 3091 2994 1792 161 3 7 chr11 112384851 112385150 -36398322 - AluSx SINE Alu -14 298 1 217 284 112 37 chr11 112385150 112385201 -36398271 - L2 LINE L2 -278 2994 2948 203 0 37 0 chr11 112385717 112385744 -36397728 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 2190 93 0 0 chr11 112385753 112386031 -36397441 - AluSg1 SINE Alu -27 282 5 614 255 162 20 chr11 112387121 112387423 -36396049 - LTR50 LTR ERVL -14 781 437 347 263 113 0 chr11 112387494 112387627 -36395845 - LTR50 LTR ERVL -590 205 58 2301 86 3 3 chr11 112387764 112388065 -36395407 - AluY SINE Alu -10 301 1 494 266 134 37 chr11 112388065 112388405 -36395067 - L1MEd LINE L1 -3104 3025 2649 286 243 96 7 chr11 112388589 112388725 -36394747 - L1MEd LINE L1 -3790 2339 2192 24 53 0 0 chr11 112388769 112388807 -36394665 + AT_rich Low_complexity Low_complexity 1 38 0 550 235 92 42 chr11 112389473 112389733 -36393739 - L1MEd LINE L1 -4874 1245 973 1835 243 94 23 chr11 112389783 112390355 -36393117 - LTR68 LTR ERV1 -127 613 1 7390 42 0 1 chr11 112390791 112392202 -36391270 - L1PA4 LINE L1 0 6155 4746 252 0 0 0 chr11 112392321 112392349 -36391123 + (A)n Simple_repeat Simple_repeat 1 28 0 213 304 89 0 chr11 112392409 112392488 -36390984 + L2 LINE L2 2223 2308 -1006 586 311 224 17 chr11 112392573 112393046 -36390426 + L2 LINE L2 2324 2894 -420 665 326 43 9 chr11 112393340 112393570 -36389902 + MIR SINE MIR 20 257 -5 532 288 88 45 chr11 112394008 112394428 -36389044 - L1MC4a LINE L1 -1833 5975 5538 348 348 43 0 chr11 112394880 112395018 -36388454 + L2 LINE L2 2205 2348 -966 288 297 42 42 chr11 112395027 112395145 -36388327 + L2 LINE L2 3189 3306 -7 326 323 34 53 chr11 112395180 112395446 -36388026 + L2 LINE L2 2354 2614 -700 395 270 87 71 chr11 112395482 112395678 -36387794 + L2 LINE L2 3115 3313 0 21 57 0 0 chr11 112396414 112396449 -36387023 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr11 112396516 112396537 -36386935 + AT_rich Low_complexity Low_complexity 1 21 0 641 297 92 88 chr11 112396963 112397805 -36385667 + L2 LINE L2 2316 3298 -15 27 29 0 0 chr11 112397888 112397922 -36385550 + AT_rich Low_complexity Low_complexity 1 34 0 1620 242 97 44 chr11 112397923 112398489 -36384983 - L1ME3A LINE L1 -7 6163 5568 337 214 70 134 chr11 112398527 112398714 -36384758 - L1ME3A LINE L1 -27 6143 5969 196 346 79 10 chr11 112398804 112398905 -36384567 - MIR SINE MIR -39 223 116 418 263 25 76 chr11 112399168 112399366 -36384106 + MIR SINE MIR 75 262 0 1594 96 9 0 chr11 112399991 112400209 -36383263 + AluSg/x SINE Alu 89 308 -4 361 274 84 56 chr11 112400461 112400640 -36382832 + MIR SINE MIR 33 216 -46 325 239 144 84 chr11 112401897 112402064 -36381408 - L2 LINE L2 0 3313 3137 865 228 48 20 chr11 112402104 112402354 -36381118 - L1ME3A LINE L1 -13 6157 5901 267 246 31 0 chr11 112402611 112402676 -36380796 + (CATA)n Simple_repeat Simple_repeat 2 68 0 192 40 0 0 chr11 112403261 112403286 -36380186 + (TA)n Simple_repeat Simple_repeat 2 26 0 25 0 0 0 chr11 112403922 112403947 -36379525 + AT_rich Low_complexity Low_complexity 1 25 0 5743 110 13 11 chr11 112403959 112405375 -36378097 - L1PA15 LINE L1 0 6165 4785 1267 302 34 29 chr11 112405407 112406019 -36377453 - L1PA12 LINE L1 -4785 2796 2182 289 216 31 21 chr11 112406262 112406359 -36377113 - L1PA12 LINE L1 -5399 2182 2085 1079 318 31 34 chr11 112406464 112407078 -36376394 - L1PA12 LINE L1 -6175 1399 788 305 207 0 0 chr11 112407730 112407788 -36375684 + LTR65 LTR ERV1 338 395 -274 2832 13 0 0 chr11 112410343 112410655 -36372817 - AluYb8 SINE Alu -6 312 1 327 259 95 43 chr11 112411068 112411252 -36372220 + L1MCc LINE L1 35 563 -5859 1211 242 72 35 chr11 112411580 112411897 -36371575 + L1MCc LINE L1 1123 1427 -5204 2189 76 3 26 chr11 112411897 112412199 -36371273 + AluY SINE Alu 1 295 -16 1211 242 72 35 chr11 112412199 112412479 -36370993 + L1MCc LINE L1 1427 1744 -4887 2344 88 0 0 chr11 112412650 112412945 -36370527 - AluSq SINE Alu -18 295 1 198 256 0 0 chr11 112412988 112413031 -36370441 + MIR SINE MIR 220 262 0 228 88 29 0 chr11 112413308 112413342 -36370130 - MADE1 DNA Mariner -43 37 3 2243 93 54 25 chr11 112413454 112413808 -36369664 - THE1B LTR MaLR 0 364 1 987 176 4 19 chr11 112414041 112414288 -36369184 - MER2 DNA MER2_type -4 341 41 339 214 10 68 chr11 112414913 112415016 -36368456 - MLT1K LTR MaLR 0 588 492 191 86 0 29 chr11 112415217 112415252 -36368220 + (TA)n Simple_repeat Simple_repeat 2 35 0 198 0 0 0 chr11 112415254 112415276 -36368196 + (CA)n Simple_repeat Simple_repeat 2 23 0 600 340 47 49 chr11 112415276 112415661 -36367811 - MLT1K LTR MaLR -188 400 17 1041 228 10 19 chr11 112416025 112416231 -36367241 + MER58A DNA MER1_type 2 205 -19 1911 152 41 16 chr11 112416519 112416930 -36366542 + L1PB4 LINE L1 5781 6200 0 1699 145 61 24 chr11 112417372 112417669 -36365803 + AluJb SINE Alu 1 308 -4 22 0 0 0 chr11 112418038 112418060 -36365412 + AT_rich Low_complexity Low_complexity 1 22 0 1954 136 0 41 chr11 112418898 112419215 -36364257 - AluSx SINE Alu -8 304 1 872 335 72 32 chr11 112419695 112420233 -36363239 - MLT1K LTR MaLR 0 588 29 502 285 67 6 chr11 112420827 112420992 -36362480 - MIR SINE MIR -46 216 42 786 252 89 24 chr11 112421294 112421540 -36361932 + MIR SINE MIR 1 262 0 22 0 0 0 chr11 112426850 112426872 -36356600 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr11 112431427 112431449 -36352023 + AT_rich Low_complexity Low_complexity 1 22 0 677 196 18 68 chr11 112432651 112432814 -36350658 + MER5A DNA MER1_type 2 156 -33 416 269 41 32 chr11 112433688 112433907 -36349565 + L1MEc LINE L1 1956 2176 -4220 * 580 248 6 0 chr11 112433893 112434050 -36349422 + L1MEc LINE L1 3326 3483 -2732 1687 91 0 0 chr11 112434061 112434270 -36349202 + AluSg SINE Alu 2 210 -100 7478 85 42 31 chr11 112434270 112434756 -36348716 + L1PA6 LINE L1 4156 4635 -1537 6634 62 25 1 chr11 112434756 112436026 -36347446 + L1PA6 LINE L1 4857 6143 -11 7478 85 42 31 chr11 112436026 112436830 -36346642 + L1PA6 LINE L1 4635 5461 -711 1911 107 0 77 chr11 112436830 112437130 -36346342 - AluSc SINE Alu -32 277 1 7478 85 42 31 chr11 112437130 112437160 -36346312 + L1PA6 LINE L1 5461 5489 -683 1374 255 137 55 chr11 112437148 112437326 -36346146 + L1MEc LINE L1 3732 3894 -2321 * 2157 119 0 0 chr11 112437326 112437620 -36345852 + AluSg SINE Alu 1 294 -16 1374 255 137 55 chr11 112437620 112438276 -36345196 + L1MEc LINE L1 3894 4631 -1584 * 16247 210 40 39 chr11 112438274 112443578 -36339894 + L1PA12 LINE L1 9 6892 -757 795 195 4 87 chr11 112443568 112443809 -36339663 + L1ME1 LINE L1 4307 4527 -1619 * 792 201 49 16 chr11 112443805 112443989 -36339483 + L1MB7 LINE L1 5994 6183 -1 * 1231 212 117 28 chr11 112443983 112444375 -36339097 + L1ME1 LINE L1 5423 5849 -317 928 213 0 66 chr11 112444380 112444591 -36338881 + MER63B DNA MER1_type 1 197 -239 1695 178 0 10 chr11 112444650 112444954 -36338518 - AluJo SINE Alu -11 301 1 1176 205 65 56 chr11 112444970 112445307 -36338165 - MLT1A1 LTR MaLR -8 357 18 237 194 160 14 chr11 112445308 112445452 -36338020 + MER63B DNA MER1_type 233 397 -37 29 70 0 0 chr11 112445513 112445570 -36337902 + AT_rich Low_complexity Low_complexity 1 57 0 3123 121 36 6 chr11 112445600 112446096 -36337376 + MER9 LTR ERVK 1 511 0 21 36 0 0 chr11 112446196 112446224 -36337248 + AT_rich Low_complexity Low_complexity 1 28 0 1485 197 70 45 chr11 112447190 112447546 -36335926 - MLT1A1 LTR MaLR 0 365 1 217 203 16 16 chr11 112447643 112447707 -36335765 + (TA)n Simple_repeat Simple_repeat 1 64 0 364 113 122 0 chr11 112447707 112447784 -36335688 - MLT2B1 LTR ERVL -389 131 41 207 325 0 36 chr11 112447968 112448051 -36335421 - L2 LINE L2 -7 3306 3227 2395 155 18 2 chr11 112448169 112448607 -36334865 - L1MB2 LINE L1 0 6171 5727 2191 116 10 0 chr11 112448675 112448976 -36334496 + AluJb SINE Alu 1 304 -8 650 258 33 0 chr11 112449926 112450108 -36333364 + MIR SINE MIR 75 262 0 259 383 31 26 chr11 112450140 112450333 -36333139 + L2 LINE L2 2594 2787 -527 230 305 55 130 chr11 112450454 112450746 -36332726 + L2 LINE L2 2997 3266 -6 186 71 0 0 chr11 112450903 112450931 -36332541 + (A)n Simple_repeat Simple_repeat 1 28 0 854 277 26 26 chr11 112451084 112451212 -36332260 + MIR SINE MIR 26 156 -106 8600 115 20 6 chr11 112451212 112452481 -36330991 - HSMAR1 DNA Mariner 0 1287 1 854 277 26 26 chr11 112452481 112452583 -36330889 + MIR SINE MIR 155 256 -6 22 56 0 0 chr11 112452776 112452812 -36330660 + AT_rich Low_complexity Low_complexity 1 36 0 226 238 356 20 chr11 112452912 112453013 -36330459 + L2 LINE L2 3177 3311 -2 678 238 7 0 chr11 112453071 112453214 -36330258 - MLT1F LTR MaLR -4 538 395 257 140 20 20 chr11 112453257 112453307 -36330165 - MLT1G LTR MaLR -540 50 1 548 244 68 108 chr11 112453307 112453659 -36329813 - MLT1G1-int LTR MaLR 0 1371 1034 256 317 0 17 chr11 112454177 112454297 -36329175 - MLT1G1-int LTR MaLR -1613 122 5 602 238 124 40 chr11 112454306 112454723 -36328749 - MLT1G1 LTR MaLR -5 590 1 232 286 92 31 chr11 112454760 112454858 -36328614 + MIR3 SINE MIR 105 208 0 301 373 58 21 chr11 112456775 112457105 -36326367 + L2 LINE L2 1331 1672 -1642 31 0 0 0 chr11 112457890 112457921 -36325551 + AT_rich Low_complexity Low_complexity 1 31 0 183 100 0 0 chr11 112458376 112458406 -36325066 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 262 330 31 10 chr11 112458406 112458503 -36324969 - L2 LINE L2 -16 3256 3158 729 187 16 0 chr11 112458549 112458672 -36324800 + FLAM_A SINE Alu 1 125 -8 288 341 127 64 chr11 112458705 112458972 -36324500 - L2 LINE L2 -39 3233 2950 265 330 125 23 chr11 112459080 112459256 -36324216 - L2 LINE L2 -449 2865 2672 192 158 0 0 chr11 112459467 112459505 -36323967 + (TGAA)n Simple_repeat Simple_repeat 1 38 0 1520 279 57 26 chr11 112460435 112461284 -36322188 + L2 LINE L2 2433 3313 0 218 333 0 0 chr11 112461641 112461689 -36321783 + L2 LINE L2 3205 3252 -20 548 235 33 39 chr11 112461843 112461996 -36321476 - L2 LINE L2 -1 3312 3161 28 48 0 0 chr11 112463200 112463242 -36320230 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr11 112463839 112463868 -36319604 + AT_rich Low_complexity Low_complexity 1 29 0 25 51 0 0 chr11 112463907 112463946 -36319526 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr11 112464135 112464156 -36319316 + AT_rich Low_complexity Low_complexity 1 21 0 780 285 156 21 chr11 112464247 112464732 -36318740 - L2 LINE L2 -148 3165 2617 1728 270 140 76 chr11 112465156 112465336 -36318136 - L2 LINE L2 -685 2629 2462 2300 80 0 3 chr11 112465336 112465638 -36317834 - AluY SINE Alu -10 301 1 1728 270 140 76 chr11 112465638 112465724 -36317748 - L2 LINE L2 -852 2462 2383 234 0 0 0 chr11 112465724 112465750 -36317722 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1728 270 140 76 chr11 112465750 112466531 -36316941 - L2 LINE L2 -931 2383 1514 24 0 0 0 chr11 112466546 112466570 -36316902 + AT_rich Low_complexity Low_complexity 1 24 0 542 247 75 84 chr11 112468702 112469033 -36314439 - L2 LINE L2 -261 3052 2734 21 36 0 0 chr11 112469366 112469394 -36314078 + AT_rich Low_complexity Low_complexity 1 28 0 2661 221 49 23 chr11 112469559 112470355 -36313117 + L1M4 LINE L1 2161 2977 -3169 361 242 175 5 chr11 112470527 112470750 -36312722 - L1ME4a LINE L1 -105 6016 5756 320 240 47 54 chr11 112470956 112471006 -36312466 - L1ME4a LINE L1 -458 5663 5614 2426 88 0 0 chr11 112471006 112471313 -36312159 - AluSc SINE Alu -2 307 1 320 240 47 54 chr11 112471313 112471391 -36312081 - L1ME4a LINE L1 -507 5614 5536 357 334 96 30 chr11 112472080 112472382 -36311090 - HAL1b LINE L1 -574 774 453 182 324 28 14 chr11 112472612 112472683 -36310789 + MIR3 SINE MIR 137 208 0 207 0 0 0 chr11 112473298 112473321 -36310151 + (TA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr11 112473533 112473554 -36309918 + AT_rich Low_complexity Low_complexity 1 21 0 590 241 69 29 chr11 112474103 112474277 -36309195 + MIR SINE MIR 41 221 -41 821 193 76 15 chr11 112475230 112475427 -36308045 - MER3 DNA MER1_type 0 209 1 263 321 37 52 chr11 112475638 112475772 -36307700 - L2 LINE L2 -1 3312 3181 25 0 0 0 chr11 112475849 112475874 -36307598 + AT_rich Low_complexity Low_complexity 1 25 0 1461 123 9 33 chr11 112476362 112476666 -36306806 + Tigger4(Zombi) DNA MER2_type 1 2655 -76 3325 108 39 193 chr11 112476666 112477363 -36306109 + Tigger3b DNA MER2_type 2 460 -2569 512 200 0 0 chr11 112477363 112477448 -36306024 - AluJ/FLAM SINE Alu -227 85 1 3325 108 39 193 chr11 112477448 112478119 -36305353 + Tigger3b DNA MER2_type 460 1232 0 469 103 13 26 chr11 112478119 112478197 -36305275 + Tigger4(Zombi) DNA MER2_type 2655 2731 0 497 155 0 52 chr11 112478552 112478649 -36304823 - AluJ/FLAM SINE Alu -220 92 1 2812 7 0 0 chr11 112478700 112479009 -36304463 + AluYa5 SINE Alu 1 309 -2 256 299 93 10 chr11 112479042 112479139 -36304333 + L2 LINE L2 3116 3220 -93 2834 13 0 0 chr11 112479341 112479656 -36303816 + AluYb8 SINE Alu 1 315 -3 734 205 0 0 chr11 112479698 112479825 -36303647 - FLAM_A SINE Alu -6 127 1 301 200 44 0 chr11 112480322 112480412 -36303060 + (TA)n Simple_repeat Simple_repeat 2 95 0 250 228 0 18 chr11 112481235 112481292 -36302180 - Charlie5 DNA MER1_type -2543 69 14 362 265 112 69 chr11 112481503 112482023 -36301449 - L1MC5 LINE L1 -159 7802 7261 256 319 42 21 chr11 112481990 112482134 -36301338 - L1MC4a LINE L1 -421 7387 7241 * 334 234 91 38 chr11 112482124 112482324 -36301148 - L1MC4 LINE L1 -748 7213 7035 372 248 20 0 chr11 112482555 112482656 -36300816 - L1ME3A LINE L1 -12 6158 6056 1722 185 0 7 chr11 112483129 112483437 -36300035 + AluJb SINE Alu 1 306 -6 455 285 172 35 chr11 112484057 112484488 -36298984 + HAL1 LINE L1 1230 1719 -788 283 309 44 7 chr11 112484853 112484989 -36298483 + L1MC4a LINE L1 2151 2291 -3855 842 254 99 90 chr11 112485150 112485674 -36297798 - MLT1H LTR MaLR -6 543 15 762 307 78 34 chr11 112485707 112486719 -36296753 + L1MC4a LINE L1 4748 5602 -568 22 35 0 0 chr11 112486905 112486934 -36296538 + AT_rich Low_complexity Low_complexity 1 29 0 2216 71 0 0 chr11 112487171 112487493 -36295979 - AluY SINE Alu 0 322 1 407 328 56 20 chr11 112488630 112488828 -36294644 - MIR SINE MIR 0 262 58 188 321 25 0 chr11 112489985 112490066 -36293406 + L3 LINE CR1 1160 1242 -335 6366 28 14 0 chr11 112490078 112490836 -36292636 - L1PA4 LINE L1 0 6155 5387 579 260 73 46 chr11 112491025 112491244 -36292228 + MIR SINE MIR 13 237 -25 421 332 61 96 chr11 112491335 112491899 -36291573 - L2 LINE L2 -1 3271 2730 866 134 0 15 chr11 112491899 112492033 -36291439 + FLAM_C SINE Alu 1 132 -1 277 309 12 0 chr11 112492165 112492249 -36291223 - MIR SINE MIR -81 181 97 247 327 80 0 chr11 112492283 112492433 -36291039 - MIR SINE MIR 0 262 101 470 99 0 0 chr11 112492943 112493014 -36290458 - AluJ/FRAM SINE Alu -11 301 231 204 167 42 0 chr11 112494154 112494202 -36289270 + (CTTTG)n Simple_repeat Simple_repeat 5 54 0 1707 144 58 3 chr11 112494238 112494530 -36288942 + MER44D DNA MER2_type 32 609 0 192 297 144 9 chr11 112496668 112496779 -36286693 - MIR SINE MIR -51 211 86 236 292 75 42 chr11 112496925 112497045 -36286427 + MIR3 SINE MIR 63 186 -22 2365 211 132 68 chr11 112497102 112497207 -36286265 + L1MC5 LINE L1 6558 6655 -1306 2332 88 0 7 chr11 112497207 112497514 -36285958 + AluY SINE Alu 1 305 -6 2365 211 132 68 chr11 112497514 112498641 -36284831 + L1MC5 LINE L1 6655 7881 -80 22 35 0 0 chr11 112499380 112499409 -36284063 + AT_rich Low_complexity Low_complexity 1 29 0 1796 171 7 7 chr11 112499512 112499821 -36283651 - AluJb SINE Alu -3 309 1 34 84 0 0 chr11 112500057 112500140 -36283332 + AT_rich Low_complexity Low_complexity 1 83 0 673 235 63 18 chr11 112500178 112500380 -36283092 - MLT1J1 LTR MaLR -240 210 1 24 32 0 0 chr11 112500937 112500968 -36282504 + AT_rich Low_complexity Low_complexity 1 31 0 506 255 96 38 chr11 112501257 112501496 -36281976 + L1M4 LINE L1 3919 4171 -1975 573 269 73 21 chr11 112502144 112502378 -36281094 + MARNA DNA Mariner 281 526 -60 2495 70 0 3 chr11 112502398 112502710 -36280762 + AluY SINE Alu 1 311 0 619 274 24 47 chr11 112503732 112504083 -36279389 + MLT1J LTR MaLR 11 431 -80 273 237 51 59 chr11 112504218 112504336 -36279136 + HERVL68-B2 LTR ERVL 2588 2704 -333 331 215 0 0 chr11 112504622 112504687 -36278785 + HERVL68-B2 LTR ERVL 2723 2787 -250 2319 97 0 10 chr11 112504754 112505064 -36278408 + AluY SINE Alu 1 307 -4 424 276 77 61 chr11 112505064 112505325 -36278147 + L1ME4a LINE L1 5856 6120 -1 25 83 0 0 chr11 112505878 112505938 -36277534 + AT_rich Low_complexity Low_complexity 1 60 0 2628 179 51 6 chr11 112506795 112507249 -36276223 + MLT2B2 LTR ERVL 3 435 -80 387 0 0 0 chr11 112507249 112507292 -36276180 + (TC)n Simple_repeat Simple_repeat 2 44 0 297 0 0 0 chr11 112507291 112507324 -36276148 + (TA)n Simple_repeat Simple_repeat 2 34 0 * 2628 179 51 6 chr11 112507292 112507360 -36276112 + MLT2B2 LTR ERVL 435 515 0 3251 149 8 2 chr11 112507543 112508052 -36275420 + MER41E LTR ERV1 1 512 0 385 239 90 39 chr11 112508135 112508261 -36275211 - L1ME LINE L1 -371 5791 5654 2000 148 20 43 chr11 112508261 112508606 -36274866 + MER1B DNA MER1_type 1 337 0 385 239 90 39 chr11 112508606 112508634 -36274838 - L1ME LINE L1 -508 5654 5629 310 220 17 0 chr11 112508695 112508754 -36274718 + MIR SINE MIR 182 241 -21 341 250 207 0 chr11 112508777 112508941 -36274531 - L1ME LINE L1 -623 5561 5364 2841 144 12 26 chr11 112508946 112509593 -36273879 - LTR8A LTR ERV1 0 727 1 328 240 124 34 chr11 112509595 112509828 -36273644 - L1ME LINE L1 -786 5360 5107 305 339 12 54 chr11 112510001 112510169 -36273303 - LTR28 LTR ERV1 -3 1752 1592 2325 219 91 34 chr11 112510179 112510938 -36272534 - LTR28 LTR ERV1 -296 1459 45 1450 226 112 62 chr11 112510970 112511712 -36271760 - MER21B LTR ERV1 -11 852 5 656 254 73 29 chr11 112511796 112512071 -36271401 - MER34B LTR ERV1 0 565 279 1801 139 17 0 chr11 112512120 112512268 -36271204 + LTR8 LTR ERV1 1 145 -546 3007 173 38 67 chr11 112512268 112512980 -36270492 - LTR8 LTR ERV1 0 691 1 1801 139 17 0 chr11 112512980 112513119 -36270353 + LTR8 LTR ERV1 145 293 -398 2649 111 18 13 chr11 112513186 112513566 -36269906 + LTR8 LTR ERV1 310 691 0 1917 185 24 27 chr11 112513566 112513767 -36269705 + MER57A LTR ERV1 32 233 -170 633 218 75 7 chr11 112513767 112513914 -36269558 - FAM SINE Alu -18 157 1 1917 185 24 27 chr11 112513914 112514085 -36269387 + MER57A LTR ERV1 233 403 0 246 212 61 0 chr11 112514177 112514243 -36269229 + LTR1B LTR ERV1 33 102 -724 735 214 155 59 chr11 112514256 112514681 -36268791 + LTR1B LTR ERV1 33 498 -328 241 273 141 0 chr11 112514893 112514992 -36268480 - MER34B LTR ERV1 -448 117 5 783 238 136 73 chr11 112515301 112515823 -36267649 + LTR38B LTR ERV1 2 610 0 2633 130 26 2 chr11 112515841 112516264 -36267208 + L1PA13 LINE L1 5720 6152 -11 19444 167 57 14 chr11 112516407 112519431 -36264041 + L1MA2 LINE L1 15 3283 -4282 1557 191 14 25 chr11 112519431 112519714 -36263758 + AluJb SINE Alu 1 280 -32 19444 167 57 14 chr11 112519714 112520953 -36262519 + L1MA2 LINE L1 3283 4467 -3098 29379 97 13 3 chr11 112520980 112526132 -36257340 + L1PA7 LINE L1 952 6150 -4 10169 164 51 7 chr11 112526125 112529239 -36254233 + L1MA2 LINE L1 4466 7719 -4 * 30 27 0 0 chr11 112529239 112529276 -36254196 + AT_rich Low_complexity Low_complexity 1 37 0 312 326 15 0 chr11 112530225 112530360 -36253112 - L1 LINE L1 -1132 5014 4878 369 233 146 36 chr11 112530471 112530724 -36252748 - L1 LINE L1 -1481 4665 4385 7473 30 5 2 chr11 112530828 112531725 -36251747 - L1PA3 LINE L1 -3 6152 5254 874 235 28 20 chr11 112531806 112532061 -36251411 - L1ME1 LINE L1 -5 6161 5905 269 125 21 0 chr11 112532088 112532136 -36251336 + THE1C LTR MaLR 15 63 -312 272 235 87 74 chr11 112532276 112532425 -36251047 - MER5A DNA MER1_type -3 186 36 548 62 123 12 chr11 112532440 112532521 -36250951 - MER46B DNA MER2_type 0 236 147 270 164 27 14 chr11 112532526 112532599 -36250873 + (TA)n Simple_repeat Simple_repeat 1 74 0 1366 149 13 4 chr11 112532604 112532839 -36250633 - MER46B DNA MER2_type -82 154 43 6166 132 22 28 chr11 112532839 112534135 -36249337 + L1MA4 LINE L1 4999 6289 -11 319 217 0 0 chr11 112534136 112534196 -36249276 - MER46B DNA MER2_type -299 62 3 202 320 39 88 chr11 112534208 112534389 -36249083 - L2 LINE L2 -1283 2031 1860 395 337 65 32 chr11 112534643 112535039 -36248433 - L1MEd LINE L1 -1038 1452 947 788 229 57 65 chr11 112535934 112536196 -36247276 + MLT1H LTR MaLR 41 300 -249 1442 198 88 30 chr11 112536240 112536276 -36247196 - MER7A DNA MER2_type -2692 346 314 1246 106 5 25 chr11 112536276 112536475 -36246997 + L1PA11 LINE L1 5980 6174 0 1442 198 88 30 chr11 112536475 112536766 -36246706 - MER7A DNA MER2_type -2724 314 2 2704 151 12 2 chr11 112537502 112537926 -36245546 - MSTA LTR MaLR 0 428 1 1058 130 121 14 chr11 112537955 112538162 -36245310 - MSTA LTR MaLR 0 428 200 363 183 0 0 chr11 112538162 112538244 -36245228 + GA-rich Low_complexity Low_complexity 2 83 0 798 141 50 7 chr11 112538245 112538440 -36245032 - MSTA LTR MaLR -199 229 1 1170 128 76 0 chr11 112538613 112538824 -36244648 - LTR54 LTR ERV1 0 510 284 617 214 79 0 chr11 112538872 112539012 -36244460 - LTR54B LTR ERV1 -347 151 1 2365 61 0 14 chr11 112539185 112539480 -36243992 + AluY SINE Alu 1 291 -20 2423 176 85 30 chr11 112539539 112539911 -36243561 + L1MB7 LINE L1 5546 5965 -219 1605 195 57 11 chr11 112539911 112540260 -36243212 + MLT1A1 LTR MaLR 1 365 0 2423 176 85 30 chr11 112540260 112540484 -36242988 + L1MB7 LINE L1 5965 6175 -9 448 311 90 22 chr11 112540581 112540993 -36242479 - L1ME LINE L1 -344 5777 5338 1276 108 0 6 chr11 112541163 112541339 -36242133 - AluSp SINE Alu -5 308 134 785 208 67 75 chr11 112541438 112541821 -36241651 + MSTC LTR MaLR 1 428 0 864 291 108 6 chr11 112541993 112542336 -36241136 + L2 LINE L2 1547 1924 -1390 1085 196 150 12 chr11 112542363 112542704 -36240768 + MER110A LTR ERV1 1 388 -80 729 153 32 6 chr11 112542733 112542890 -36240582 + Tigger3(Golem) DNA MER2_type 2257 2417 -612 3613 139 90 14 chr11 112542957 112543676 -36239796 + Tigger3(Golem) DNA MER2_type 2256 3029 0 390 202 137 48 chr11 112543678 112543802 -36239670 + L2 LINE L2 3171 3305 -8 1391 216 227 4 chr11 112544340 112544821 -36238651 - L1MD3 LINE L1 -5 7990 7403 383 202 11 43 chr11 112544824 112544918 -36238554 - MLT1F1 LTR MaLR -442 125 35 762 184 55 10 chr11 112544929 112545130 -36238342 - L1MC3 LINE L1 -699 7086 6877 263 315 42 6 chr11 112545273 112545438 -36238034 - HAL1 LINE L1 -978 1529 1359 1486 187 56 8 chr11 112545490 112545645 -36237827 - AluJo SINE Alu -28 284 109 315 0 0 0 chr11 112545645 112545680 -36237792 + (TG)n Simple_repeat Simple_repeat 2 36 0 1486 187 56 8 chr11 112545680 112545792 -36237680 - AluJo SINE Alu -203 109 4 304 313 95 34 chr11 112545866 112546027 -36237445 - L1MEd LINE L1 -5002 1117 967 2670 35 3 0 chr11 112546027 112546337 -36237135 - AluY SINE Alu 0 311 1 304 313 95 34 chr11 112546337 112546469 -36237003 - L1MEd LINE L1 -5152 967 806 389 214 69 41 chr11 112546516 112546536 -36236936 + LTR50 LTR ERVL 12 30 -765 1547 190 18 82 chr11 112546536 112546926 -36236546 - MLT1A1 LTR MaLR 0 365 1 389 214 69 41 chr11 112546926 112547050 -36236422 + LTR50 LTR ERVL 30 160 -635 569 203 170 7 chr11 112547329 112547482 -36235990 - MER45A DNA AcHobo 0 178 1 330 252 31 16 chr11 112547499 112547626 -36235846 + LTR50 LTR ERVL 556 684 -111 315 0 0 0 chr11 112549217 112549252 -36234220 + (TG)n Simple_repeat Simple_repeat 2 36 0 1009 234 23 0 chr11 112550121 112550339 -36233133 + MIR SINE MIR 30 252 -10 266 362 68 5 chr11 112550331 112550518 -36232954 - MIR SINE MIR -58 150 8 * 21 0 0 0 chr11 112551535 112551556 -36231916 + AT_rich Low_complexity Low_complexity 1 21 0 279 293 85 0 chr11 112551885 112551967 -36231505 - MIR SINE MIR -55 207 119 211 255 191 11 chr11 112552479 112552573 -36230899 - L2 LINE L2 -1 3312 3202 189 343 30 20 chr11 112552591 112552690 -36230782 + L2 LINE L2 2538 2637 -677 1827 170 23 0 chr11 112552955 112553255 -36230217 - AluSx SINE Alu -5 307 1 2168 134 50 21 chr11 112553321 112554152 -36229320 + L1MA7 LINE L1 4799 5721 -445 2118 162 31 24 chr11 112554152 112554610 -36228862 + L1MA7 LINE L1 5819 6279 -12 2168 134 50 21 chr11 112554610 112554874 -36228598 + L1MA7 LINE L1 5721 5976 -190 346 246 27 0 chr11 112554907 112555017 -36228455 + L1MA10 LINE L1 6211 6323 -11 675 152 134 6 chr11 112555327 112555491 -36227981 + L1MA7 LINE L1 6107 6291 0 2129 197 34 40 chr11 112555730 112556254 -36227218 + MER73 LTR ERVL 1 521 -123 1140 105 12 0 chr11 112556256 112556418 -36227054 + AluSg/x SINE Alu 137 300 -12 803 103 0 0 chr11 112556428 112556545 -36226927 + MER73 LTR ERVL 528 644 0 2393 154 41 10 chr11 112558232 112558647 -36224825 - MSTA LTR MaLR 0 428 1 812 256 66 61 chr11 112558660 112559223 -36224249 + Tigger8 DNA MER2_type 29 636 -30 2497 27 40 0 chr11 112559631 112559930 -36223542 - AluY SINE Alu 0 311 1 1109 193 41 106 chr11 112560290 112560678 -36222794 + MLT2D LTR ERVL 1 363 -51 2142 142 75 0 chr11 112560686 112561018 -36222454 - LTR18A LTR ERVL 0 357 1 9407 161 5 1 chr11 112561019 112563255 -36220217 - HERVL18 LTR ERVL 0 6047 3772 6665 151 11 3 chr11 112563250 112564335 -36219137 - HERVL18 LTR ERVL -2381 3666 2573 * 2220 181 61 0 chr11 112564325 112564734 -36218738 - HERVL18 LTR ERVL -3886 2161 1728 * 436 118 59 8 chr11 112564771 112564890 -36218582 + CT-rich Low_complexity Low_complexity 2 126 0 455 181 0 12 chr11 112565048 112565131 -36218341 + FLAM_A SINE Alu 18 99 -43 25 0 0 0 chr11 112565134 112565159 -36218313 + AT_rich Low_complexity Low_complexity 1 25 0 380 309 167 29 chr11 112566983 112567193 -36216279 - MIR SINE MIR 0 262 24 235 292 0 31 chr11 112567219 112567315 -36216157 + (TG)n Simple_repeat Simple_repeat 2 94 0 317 123 0 18 chr11 112570252 112570309 -36213163 + (GGAA)n Simple_repeat Simple_repeat 3 58 0 387 127 0 0 chr11 112571122 112571185 -36212287 + (TG)n Simple_repeat Simple_repeat 1 63 0 1572 174 21 0 chr11 112571958 112572246 -36211226 + MER49 LTR ERV1 1 294 -629 1613 215 6 3 chr11 112572291 112572631 -36210841 + MER4D LTR ERV1 563 903 0 1064 247 94 52 chr11 112573143 112573677 -36209795 - LTR38 LTR ERV1 0 556 1 5763 87 53 31 chr11 112573861 112574719 -36208753 - L1PA13 LINE L1 -2 6161 5266 386 121 48 84 chr11 112574719 112574802 -36208670 + MADE1 DNA Mariner 1 80 0 5763 87 53 31 chr11 112574802 112575035 -36208437 - L1PA13 LINE L1 -897 5266 5040 2310 246 67 32 chr11 112575438 112576210 -36207262 + MER21B LTR ERV1 12 810 -53 333 329 51 7 chr11 112576767 112576904 -36206568 - L1MEd LINE L1 -5919 200 58 214 339 178 20 chr11 112577327 112577619 -36205853 - L2 LINE L2 -1185 2129 1792 1164 153 53 5 chr11 112577655 112577845 -36205627 + AluJo SINE Alu 7 205 -107 420 211 11 0 chr11 112579152 112579242 -36204230 - MIR SINE MIR -2 260 170 377 235 42 111 chr11 112579381 112579598 -36203874 - LTR67 LTR ERVL 0 557 356 451 311 91 9 chr11 112579969 112580248 -36203224 - LTR16A LTR ERVL -5 452 140 569 220 0 0 chr11 112580431 112580549 -36202923 + L1M4 LINE L1 5478 5595 -583 363 203 0 0 chr11 112580768 112580842 -36202630 - L1M4 LINE L1 -627 5551 5478 23 0 0 0 chr11 112580854 112580877 -36202595 + AT_rich Low_complexity Low_complexity 1 23 0 229 278 167 21 chr11 112581027 112581171 -36202301 + L3 LINE CR1 1118 1282 -295 259 360 0 0 chr11 112581243 112581332 -36202140 + L3 LINE CR1 1417 1505 -72 487 271 50 23 chr11 112581445 112581666 -36201806 + Charlie8 DNA MER1_type 76 302 -2115 193 387 13 0 chr11 112581749 112581824 -36201648 + L2 LINE L2 3011 3086 -227 1836 143 43 0 chr11 112582368 112582648 -36200824 - AluSx SINE Alu -20 292 1 23 0 0 0 chr11 112582754 112582777 -36200695 + AT_rich Low_complexity Low_complexity 1 23 0 705 200 82 85 chr11 112582996 112583204 -36200268 + L1 LINE L1 3562 3770 -2376 1913 179 0 0 chr11 112583204 112583505 -36199967 + AluJb SINE Alu 1 301 -11 705 200 82 85 chr11 112583505 112583566 -36199906 + L1 LINE L1 3770 3830 -2316 1399 269 41 60 chr11 112583569 112583970 -36199502 - MLT1E LTR MaLR -6 587 197 1969 120 41 24 chr11 112583970 112584261 -36199211 - AluSq SINE Alu -17 296 1 1399 269 41 60 chr11 112584261 112584397 -36199075 - MLT1E LTR MaLR -396 197 60 419 265 82 36 chr11 112584416 112584612 -36198860 - MLT1J LTR MaLR -296 215 11 415 251 101 56 chr11 112585794 112586061 -36197411 + MLT1I LTR MaLR 123 401 -8 471 268 63 21 chr11 112586079 112586269 -36197203 + L2 LINE L2 3112 3309 -4 476 200 96 59 chr11 112586374 112586509 -36196963 + MIR SINE MIR 66 205 -57 740 293 75 34 chr11 112586633 112586927 -36196545 + MLT1J LTR MaLR 153 458 -53 211 321 0 0 chr11 112587033 112587089 -36196383 + (TG)n Simple_repeat Simple_repeat 2 57 0 5772 110 24 15 chr11 112587225 112587582 -36195890 - L1PB1 LINE L1 0 6151 5799 195 42 0 0 chr11 112587582 112587606 -36195866 + (TG)n Simple_repeat Simple_repeat 2 25 0 * 401 36 0 18 chr11 112587605 112587661 -36195811 + (TA)n Simple_repeat Simple_repeat 1 55 0 5772 110 24 15 chr11 112587606 112588436 -36195036 - L1PB1 LINE L1 -352 5799 5019 825 231 58 0 chr11 112588435 112588678 -36194794 + L1PB1 LINE L1 4771 5027 -1119 * 241 133 89 0 chr11 112589817 112589862 -36193610 - MLT2C2 LTR ERVL 0 464 416 2111 205 65 13 chr11 112589863 112590311 -36193161 - MLT2B3 LTR ERVL -83 471 1 331 271 9 28 chr11 112590464 112590571 -36192901 - LTR16A LTR ERVL -7 443 346 1779 181 75 36 chr11 112591583 112592025 -36191447 + LTR2B LTR ERV1 32 490 0 35203 67 33 23 chr11 112592033 112597104 -36186368 + Harlequin LTR ERV1 1 5123 -1773 6963 121 8 1 chr11 112597091 112598162 -36185310 + Harlequin LTR ERV1 5810 6888 -8 * 1598 195 88 63 chr11 112598163 112598640 -36184832 + LTR2B LTR ERV1 2 490 0 29 28 0 0 chr11 112598820 112598856 -36184616 + AT_rich Low_complexity Low_complexity 1 36 0 1616 261 106 22 chr11 112598871 112599252 -36184220 + L2 LINE L2 2130 2578 -736 2064 141 39 36 chr11 112599252 112599615 -36183857 + THE1B LTR MaLR 1 364 0 1616 261 106 22 chr11 112599615 112599816 -36183656 + L2 LINE L2 2578 2761 -553 743 269 47 71 chr11 112599802 112599948 -36183524 + L2 LINE L2 2939 3087 -226 * 2163 117 0 3 chr11 112599948 112600247 -36183225 + AluY SINE Alu 1 298 -13 743 269 47 71 chr11 112600247 112600465 -36183007 + L2 LINE L2 3087 3294 -19 347 325 178 6 chr11 112600947 112601104 -36182368 - MIR SINE MIR -78 184 1 251 333 63 32 chr11 112602465 112602591 -36180881 - L2 LINE L2 -187 3085 2956 203 261 0 14 chr11 112602816 112602884 -36180588 + MIR SINE MIR 84 148 -62 28 29 0 0 chr11 112604535 112604570 -36178902 + AT_rich Low_complexity Low_complexity 1 35 0 307 320 23 55 chr11 112604744 112604872 -36178600 - MIR3 SINE MIR -71 137 14 1930 141 136 18 chr11 112605293 112605675 -36177797 - MSTA LTR MaLR -1 427 1 786 245 107 0 chr11 112605690 112605906 -36177566 - MIR SINE MIR 0 262 24 522 297 78 17 chr11 112606282 112606501 -36176971 - MIR SINE MIR -18 244 7 355 291 51 25 chr11 112606848 112607006 -36176466 + MARNA DNA Mariner 356 517 -69 375 23 0 0 chr11 112607054 112607098 -36176374 + (CA)n Simple_repeat Simple_repeat 1 44 0 519 278 34 48 chr11 112607132 112607341 -36176131 - L3 LINE CR1 -193 1384 1179 302 344 76 13 chr11 112608346 112608503 -36174969 + MIR SINE MIR 94 260 -2 236 336 58 67 chr11 112608717 112608940 -36174532 - L2 LINE L2 -86 3186 2966 2319 158 134 35 chr11 112609180 112609894 -36173578 + LTR1B LTR ERV1 1 826 0 317 244 61 30 chr11 112610235 112610366 -36173106 + MIR SINE MIR 32 166 -96 281 233 56 44 chr11 112610504 112610594 -36172878 - Charlie8 DNA MER1_type -1946 471 381 719 289 12 45 chr11 112610606 112610670 -36172802 - MIR SINE MIR -27 235 170 2310 88 3 3 chr11 112610670 112610966 -36172506 - AluSg SINE Alu -14 296 1 719 289 12 45 chr11 112610966 112611143 -36172329 - MIR SINE MIR -92 170 2 400 291 80 38 chr11 112611245 112611482 -36171990 - Charlie8 DNA MER1_type -2163 254 8 467 268 126 50 chr11 112611501 112611740 -36171732 + MIR SINE MIR 6 262 0 343 304 112 25 chr11 112612351 112612512 -36170960 - MER5A DNA MER1_type -14 175 1 358 342 65 0 chr11 112612878 112613062 -36170410 + MLT1L LTR MaLR 411 606 -9 431 255 91 19 chr11 112614997 112615205 -36168267 + MLT1L LTR MaLR 68 290 -325 421 257 82 0 chr11 112615305 112615476 -36167996 + MLT1L LTR MaLR 427 611 -4 464 286 96 40 chr11 112615518 112615717 -36167755 + MIR SINE MIR 4 213 -49 339 286 31 0 chr11 112616693 112616791 -36166681 + MIR SINE MIR 88 188 -74 636 271 111 29 chr11 112617217 112617859 -36165613 - L1MC5 LINE L1 -50 7911 7261 429 195 41 41 chr11 112617864 112617987 -36165485 - L1MC5 LINE L1 -2014 5794 5672 373 302 68 18 chr11 112618049 112618678 -36164794 - L1MEd LINE L1 -4883 1236 701 1574 135 31 130 chr11 112618743 112619159 -36164313 - THE1C LTR MaLR 0 375 1 891 228 99 36 chr11 112621044 112621407 -36162065 - MER39 LTR ERV1 -79 628 119 181 191 64 21 chr11 112621584 112621631 -36161841 - MER5B DNA MER1_type -124 54 6 262 287 25 33 chr11 112624344 112624466 -36159006 + MER117 DNA MER1_type 46 166 -31 2328 80 0 17 chr11 112624935 112625234 -36158238 + AluY SINE Alu 3 296 -15 537 267 60 0 chr11 112625741 112625891 -36157581 - MLT1G1 LTR MaLR -8 587 429 831 238 84 48 chr11 112625920 112626230 -36157242 - MLT1G1 LTR MaLR -277 279 1 317 216 182 0 chr11 112626230 112626281 -36157191 + MER105 DNA DNA 102 142 -62 189 0 0 0 chr11 112626281 112626302 -36157170 + (TTTTA)n Simple_repeat Simple_repeat 5 25 0 317 216 182 0 chr11 112626302 112626335 -36157137 + MER105 DNA DNA 142 202 -2 211 211 0 0 chr11 112626368 112626406 -36157066 + L2 LINE L2 3216 3253 -19 345 331 23 0 chr11 112626866 112626996 -36156476 - MIR SINE MIR 0 262 130 386 300 50 7 chr11 112627265 112627405 -36156067 - MIR3 SINE MIR -3 205 60 245 117 8 18 chr11 112628423 112628477 -36154995 - LTR41 LTR ERVL -3 792 723 1123 180 31 27 chr11 112628483 112628665 -36154807 + AluJo SINE Alu 90 275 -37 207 0 0 0 chr11 112628665 112628688 -36154784 + (GA)n Simple_repeat Simple_repeat 2 24 0 1123 180 31 27 chr11 112628688 112628727 -36154745 + AluJo SINE Alu 275 312 0 1091 255 148 17 chr11 112628775 112629303 -36154169 - LTR50 LTR ERVL -119 676 3 2609 130 39 5 chr11 112629673 112630087 -36153385 + MSTA LTR MaLR 1 428 0 34749 89 12 25 chr11 112630755 112636974 -36146498 + L1PA6 LINE L1 11 6136 -18 267 54 0 0 chr11 112636985 112637022 -36146450 + (TA)n Simple_repeat Simple_repeat 1 37 0 713 168 168 6 chr11 112637636 112637809 -36145663 - MER3 DNA MER1_type -5 204 4 319 250 39 7 chr11 112638461 112638567 -36144905 - MIR SINE MIR -63 145 60 1638 185 24 3 chr11 112638594 112638860 -36144612 + AluJo SINE Alu 9 283 -29 522 0 0 0 chr11 112638860 112638918 -36144554 + (CA)n Simple_repeat Simple_repeat 2 59 0 1638 185 24 3 chr11 112638918 112638938 -36144534 + AluJo SINE Alu 283 301 -11 511 131 111 0 chr11 112639351 112639450 -36144022 - L1MA7 LINE L1 -7 6284 6175 2874 83 38 7 chr11 112640777 112641200 -36142272 + MLT2A1 LTR ERVL 1 436 -8 227 270 180 9 chr11 112641279 112641390 -36142082 - L2 LINE L2 -5 3267 3138 24 0 0 0 chr11 112641672 112641696 -36141776 + AT_rich Low_complexity Low_complexity 1 24 0 3346 158 52 53 chr11 112642766 112643540 -36139932 + L1MA7 LINE L1 5509 6281 -10 23 0 0 0 chr11 112643554 112643577 -36139895 + AT_rich Low_complexity Low_complexity 1 23 0 1454 117 27 63 chr11 112643591 112643890 -36139582 + L1MA9 LINE L1 6025 6312 0 1894 146 30 7 chr11 112644005 112644300 -36139172 + AluSx SINE Alu 1 302 -10 1328 165 15 8 chr11 112644565 112644810 -36138662 - MER31A LTR ERV1 0 485 239 2512 149 38 53 chr11 112644810 112645341 -36138131 + LTR26B LTR ERV1 1 523 -8 603 176 86 0 chr11 112645344 112645499 -36137973 - MER31A LTR ERV1 -243 242 19 1462 254 39 17 chr11 112645507 112645972 -36137500 + L1MCb LINE L1 8 482 -5563 287 274 42 32 chr11 112645991 112646086 -36137386 - MLT1K LTR MaLR -172 416 321 2126 122 0 3 chr11 112646394 112646697 -36136775 + AluSx SINE Alu 5 306 -6 250 268 0 0 chr11 112647682 112647738 -36135734 + GA-rich Low_complexity Low_complexity 1 56 0 540 293 182 6 chr11 112649379 112649560 -36133912 + MIR SINE MIR 36 248 -14 22 0 0 0 chr11 112649753 112649775 -36133697 + AT_rich Low_complexity Low_complexity 1 22 0 680 250 37 0 chr11 112649998 112650162 -36133310 - MIR SINE MIR -58 204 35 245 321 52 15 chr11 112650335 112650469 -36133003 - L2 LINE L2 -260 3012 2874 229 266 68 45 chr11 112650531 112650708 -36132764 + MER34 LTR ERV1 67 247 -295 362 136 0 17 chr11 112650708 112650767 -36132705 + MER39 LTR ERV1 1 58 -649 1341 133 0 5 chr11 112650780 112650968 -36132504 - AluSg/x SINE Alu -21 291 105 743 113 9 0 chr11 112650979 112651094 -36132378 - MER4D LTR ERV1 -587 285 170 2781 125 5 5 chr11 112651109 112651549 -36131923 + MER4D LTR ERV1 464 903 0 310 276 10 0 chr11 112651663 112651761 -36131711 - MER110A LTR ERV1 -298 170 72 339 65 0 0 chr11 112652238 112652284 -36131188 + (TC)n Simple_repeat Simple_repeat 2 47 0 25 21 0 43 chr11 112652286 112652304 -36131168 + AT_rich Low_complexity Low_complexity 1 18 -27 2167 101 13 7 chr11 112652304 112652602 -36130870 - AluSp SINE Alu -13 300 1 25 21 0 43 chr11 112652602 112652630 -36130842 + AT_rich Low_complexity Low_complexity 18 45 0 185 291 0 0 chr11 112652657 112652712 -36130760 - L2 LINE L2 -1012 2302 2248 1295 209 125 86 chr11 112653304 112653922 -36129550 + LTR48B LTR ERV1 1 642 -2 334 324 18 9 chr11 112654437 112654548 -36128924 + MIR3 SINE MIR 82 193 -15 2029 146 0 3 chr11 112654729 112655023 -36128449 + AluSx SINE Alu 18 310 -2 433 290 27 92 chr11 112655321 112655468 -36128004 - MIR SINE MIR -7 255 135 2375 65 0 16 chr11 112655468 112655775 -36127697 - AluY SINE Alu -9 302 1 433 290 27 92 chr11 112655775 112655890 -36127582 - MIR SINE MIR -127 135 14 2146 115 0 3 chr11 112656020 112656324 -36127148 + AluY SINE Alu 1 303 -8 1061 227 132 40 chr11 112656468 112656979 -36126493 + MER34C LTR ERV1 1 511 -31 879 298 86 26 chr11 112657765 112658147 -36125325 + LTR16C LTR ERVL 85 489 -2 288 380 44 6 chr11 112658556 112658714 -36124758 - L2 LINE L2 -8 3264 3101 213 233 23 0 chr11 112658950 112658993 -36124479 - MIR3 SINE MIR -14 194 151 387 83 0 0 chr11 112659094 112659154 -36124318 + (CA)n Simple_repeat Simple_repeat 1 60 0 314 329 40 50 chr11 112660588 112660857 -36122615 - L2 LINE L2 -219 3053 2788 893 228 80 92 chr11 112661250 112661715 -36121757 + MLT1C LTR MaLR 7 465 -2 339 337 128 33 chr11 112662164 112662532 -36120940 + L1MEd LINE L1 274 676 -5443 520 274 53 48 chr11 112662568 112662944 -36120528 + L1MEd LINE L1 757 1134 -4985 33 43 0 0 chr11 112663022 112663069 -36120403 + AT_rich Low_complexity Low_complexity 1 47 0 544 282 71 14 chr11 112663115 112663480 -36119992 + L1MEd LINE L1 1284 1669 -4641 1174 168 47 19 chr11 112663916 112664052 -36119420 + L1MD3 LINE L1 7733 7864 -131 4995 117 33 9 chr11 112664052 112664814 -36118658 - LTR17 LTR ERV1 0 780 1 1174 168 47 19 chr11 112664814 112664933 -36118539 + L1MD3 LINE L1 7864 7995 0 1861 153 0 24 chr11 112665072 112665367 -36118105 + AluJo SINE Alu 2 289 -23 774 243 22 36 chr11 112665435 112665468 -36118004 + L1PA16 LINE L1 5942 5974 -192 2100 155 3 0 chr11 112665468 112665777 -36117695 + AluSx SINE Alu 3 312 0 774 243 22 36 chr11 112665777 112665965 -36117507 + L1PA16 LINE L1 5974 6160 -6 495 279 38 47 chr11 112666402 112666506 -36116966 + L1MEd LINE L1 2333 2436 -3693 2180 128 128 11 chr11 112666506 112666888 -36116584 - MSTA LTR MaLR -1 427 1 495 279 38 47 chr11 112666888 112667123 -36116349 + L1MEd LINE L1 2436 2669 -3460 184 368 26 51 chr11 112667596 112667713 -36115759 - L2 LINE L2 -173 3099 2986 392 286 31 57 chr11 112668095 112668287 -36115185 + MIR3 SINE MIR 8 194 -14 607 287 17 17 chr11 112668406 112668587 -36114885 - MIR SINE MIR -48 214 34 2400 138 75 21 chr11 112668812 112669239 -36114233 - LTR47A LTR ERVL 0 452 3 4777 148 46 15 chr11 112670181 112671092 -36112380 + L1PBa LINE L1 3 941 -5922 543 279 32 6 chr11 112671125 112671283 -36112189 + MIR SINE MIR 2 163 -99 2176 200 40 100 chr11 112671304 112672035 -36111437 + LTR8A LTR ERV1 40 726 -1 21 71 0 0 chr11 112672157 112672199 -36111273 + AT_rich Low_complexity Low_complexity 1 42 0 342 67 0 0 chr11 112672272 112672317 -36111155 + (CA)n Simple_repeat Simple_repeat 2 46 0 478 279 43 6 chr11 112672770 112672931 -36110541 - MIR SINE MIR -17 245 79 192 206 289 21 chr11 112672940 112673037 -36110435 - L2 LINE L2 -8 3305 3183 240 325 35 113 chr11 112673174 112673377 -36110095 + L2 LINE L2 2898 3084 -188 225 263 56 101 chr11 112673488 112673640 -36109832 + MIR3 SINE MIR 7 160 -85 290 323 102 24 chr11 112675544 112675671 -36107801 + MIR SINE MIR 17 153 -109 322 282 0 39 chr11 112675782 112675885 -36107587 - L2 LINE L2 -5 3308 3210 1759 166 75 3 chr11 112675939 112676288 -36107184 + MLT2D LTR ERVL 3 474 -46 402 181 0 90 chr11 112676343 112676476 -36106996 + MER112 DNA MER1_type 133 253 -7 1852 174 12 12 chr11 112676908 112677248 -36106224 - MER2 DNA MER2_type 0 344 5 1866 219 67 103 chr11 112677254 112677492 -36105980 + L1MC3 LINE L1 6913 7158 -627 283 186 34 0 chr11 112677492 112677551 -36105921 + MLT1F1 LTR MaLR 71 131 -436 1866 219 67 103 chr11 112677551 112678144 -36105328 + L1MC3 LINE L1 7158 7770 -15 405 292 70 6 chr11 112678905 112679076 -36104396 - MLT1J2 LTR MaLR 0 450 269 578 279 29 29 chr11 112679148 112679356 -36104116 + MER63A DNA MER1_type 1 208 -2 221 313 209 26 chr11 112679446 112679561 -36103911 - MER91C DNA MER1_type -3 137 2 1440 210 97 28 chr11 112680579 112681013 -36102459 + MLT2B1 LTR ERVL 1 464 -56 2058 141 0 3 chr11 112681106 112681396 -36102076 - AluSx SINE Alu -23 289 1 306 294 100 31 chr11 112682312 112682472 -36101000 + MIR3 SINE MIR 6 176 -32 3599 136 117 5 chr11 112683093 112683726 -36099746 + MER39 LTR ERV1 4 707 0 31 44 0 0 chr11 112683735 112683780 -36099692 + AT_rich Low_complexity Low_complexity 1 45 0 1171 128 5 0 chr11 112684337 112684525 -36098947 + MSTA LTR MaLR 1 189 -239 1989 233 16 67 chr11 112684532 112684793 -36098679 - L1P LINE L1 -3027 3119 2846 2359 91 13 0 chr11 112684793 112685091 -36098381 - AluSx SINE Alu -10 302 1 1989 233 16 67 chr11 112685091 112685616 -36097856 - L1P LINE L1 -3300 2846 2373 273 324 108 0 chr11 112685684 112685786 -36097686 - MIR3 SINE MIR -7 201 89 198 0 0 0 chr11 112686436 112686458 -36097014 + (CAG)n Simple_repeat Simple_repeat 2 23 0 444 261 146 55 chr11 112686730 112686929 -36096543 - MIR SINE MIR 0 262 46 1245 183 42 17 chr11 112686944 112687084 -36096388 - Charlie5 DNA MER1_type -36 2588 2453 2359 115 0 0 chr11 112687084 112687389 -36096083 - AluSx SINE Alu -7 305 1 1245 183 42 17 chr11 112687389 112687603 -36095869 - Charlie5 DNA MER1_type -171 2453 2225 559 172 16 8 chr11 112687590 112687712 -36095760 - Charlie5 DNA MER1_type -2489 123 1 * 1063 209 5 9 chr11 112687746 112687956 -36095516 + AluJo SINE Alu 85 293 -19 372 315 0 11 chr11 112688117 112688209 -36095263 + MIR SINE MIR 12 102 -160 380 71 18 0 chr11 112689053 112689109 -36094363 + (GA)n Simple_repeat Simple_repeat 2 58 0 595 318 5 23 chr11 112690446 112690663 -36092809 - MIR SINE MIR -44 218 6 218 273 216 0 chr11 112691938 112692026 -36091446 + MIR SINE MIR 84 190 -72 220 178 59 10 chr11 112692124 112692225 -36091247 + (TATG)n Simple_repeat Simple_repeat 3 108 0 * 302 171 14 0 chr11 112692224 112692294 -36091178 + (CA)n Simple_repeat Simple_repeat 2 72 0 425 275 62 26 chr11 112692456 112692649 -36090823 + LTR7 LTR ERV1 238 437 -13 219 229 0 0 chr11 112692656 112692717 -36090755 + (TA)n Simple_repeat Simple_repeat 2 62 0 * 418 173 16 31 chr11 112692658 112692785 -36090687 + (CATA)n Simple_repeat Simple_repeat 2 126 0 1599 235 44 5 chr11 112693284 112693667 -36089805 - MER119 DNA MER1_type -182 401 4 2598 167 64 25 chr11 112694308 112694872 -36088600 - MER6A DNA MER2_type -5 600 15 299 208 148 20 chr11 112694913 112695014 -36088458 + L2 LINE L2 1628 1741 -1573 3410 56 5 0 chr11 112695014 112695445 -36088027 + L1PA8 LINE L1 5731 6163 -9 311 260 143 26 chr11 112695485 112695639 -36087833 + L2 LINE L2 1899 2070 -1244 315 276 41 28 chr11 112695745 112695890 -36087582 + L2 LINE L2 3167 3313 0 362 229 59 59 chr11 112697984 112698137 -36085335 - L1MA10 LINE L1 -1 6333 6181 2332 76 0 45 chr11 112698617 112698931 -36084541 - AluSg SINE Alu -10 300 1 572 318 120 14 chr11 112699062 112699279 -36084193 + MIR SINE MIR 13 252 -10 224 182 36 0 chr11 112699360 112699415 -36084057 - L2 LINE L2 -1 3312 3256 896 187 27 0 chr11 112700113 112700263 -36083209 - FRAM SINE Alu -24 152 1 272 296 62 0 chr11 112700639 112700720 -36082752 - L2 LINE L2 -189 3083 2998 * 390 252 48 0 chr11 112700719 112700822 -36082650 - MIR SINE MIR 0 262 155 257 286 0 13 chr11 112700825 112700902 -36082570 + (TATG)n Simple_repeat Simple_repeat 1 76 0 581 168 76 0 chr11 112702946 112703077 -36080395 - L1ME3A LINE L1 -1 6169 6029 731 283 6 6 chr11 112703196 112703373 -36080099 + MER5A DNA MER1_type 7 183 -6 290 203 40 0 chr11 112703522 112703596 -36079876 - L1ME1 LINE L1 -7 6159 6083 212 333 116 29 chr11 112703652 112703790 -36079682 + L2 LINE L2 3164 3313 0 727 325 72 8 chr11 112704057 112704433 -36079039 + LTR16C LTR ERVL 89 488 -3 296 235 81 52 chr11 112704471 112704607 -36078865 + MIR SINE MIR 66 205 -57 447 270 50 38 chr11 112704899 112705058 -36078414 - L2 LINE L2 -4 3309 3149 6996 164 37 11 chr11 112705097 112707543 -36075929 + L1PB1 LINE L1 3636 6148 -3 1547 285 117 19 chr11 112707571 112708288 -36075184 - L2 LINE L2 -208 3105 2308 730 231 80 53 chr11 112708312 112708537 -36074935 + MIR SINE MIR 18 248 -14 791 265 32 5 chr11 112708538 112708757 -36074715 - L2 LINE L2 -1000 2314 2090 1971 165 9 41 chr11 112709207 112709649 -36073823 - L1MB4 LINE L1 0 6180 5753 317 336 42 7 chr11 112710089 112710232 -36073240 - L3b LINE CR1 -132 1451 1304 387 0 0 0 chr11 112710947 112710990 -36072482 + (TG)n Simple_repeat Simple_repeat 2 44 0 234 280 89 70 chr11 112711695 112711852 -36071620 - MLT1I LTR MaLR -148 261 102 17447 36 1 2 chr11 112712235 112714793 -36068679 + L1P1 LINE L1 3172 5724 -431 247 278 9 23 chr11 112714848 112714992 -36068480 + T-rich Low_complexity Low_complexity 1 142 0 330 172 0 0 chr11 112715190 112715254 -36068218 - L1 LINE L1 -2597 3785 3722 * 3353 204 21 24 chr11 112715245 112715649 -36067823 - L1 LINE L1 -3089 3293 2889 2430 245 53 6 chr11 112715649 112716273 -36067199 - MER82 DNA MER2_type 0 653 1 3353 204 21 24 chr11 112716273 112716846 -36066626 - L1 LINE L1 -3493 2889 2308 204 158 0 0 chr11 112716872 112716910 -36066562 + A-rich Low_complexity Low_complexity 2 39 0 1417 154 0 0 chr11 112717166 112717374 -36066098 - AluSg/x SINE Alu -12 298 91 696 249 28 23 chr11 112718094 112718271 -36065201 + MER5B DNA MER1_type 1 178 0 225 356 19 19 chr11 112719792 112719912 -36063560 - MIR SINE MIR -72 136 17 495 294 71 16 chr11 112720523 112720707 -36062765 - MIR SINE MIR -46 216 23 2484 125 24 5 chr11 112720925 112721342 -36062130 - L1MA6 LINE L1 0 6300 5876 545 313 81 26 chr11 112721348 112721770 -36061702 - L1MC4a LINE L1 -1915 5893 5449 3677 158 24 14 chr11 112721780 112722490 -36060982 - L1MB7 LINE L1 -15 6667 5951 2175 131 34 6 chr11 112722490 112722848 -36060624 + THE1C LTR MaLR 3 370 -5 3985 206 67 13 chr11 112722972 112724211 -36059261 - L1MB7 LINE L1 -697 5981 4667 700 92 9 9 chr11 112724212 112724321 -36059151 - L1MB1 LINE L1 0 6168 6060 1064 242 47 28 chr11 112724340 112724703 -36058769 - L1MB7 LINE L1 -6163 379 10 874 88 0 15 chr11 112724703 112724839 -36058633 + (TTCC)n Simple_repeat Simple_repeat 1 134 0 383 226 226 0 chr11 112724839 112724941 -36058531 - FLAM_A SINE Alu -7 126 2 325 311 98 18 chr11 112725475 112725639 -36057833 + MIR SINE MIR 57 233 -29 298 294 28 28 chr11 112725736 112725845 -36057627 + L2 LINE L2 3191 3299 -14 378 313 55 12 chr11 112725848 112726011 -36057461 - L3b LINE CR1 -110 1473 1304 387 0 0 0 chr11 112726727 112726770 -36056702 + (TG)n Simple_repeat Simple_repeat 2 44 0 257 311 72 56 chr11 112727475 112727655 -36055817 - MLT1I LTR MaLR -148 261 79 614 179 143 18 chr11 112727715 112727883 -36055589 - MER53 DNA DNA 0 189 1 293 356 74 20 chr11 112728941 112729239 -36054233 + MLT1L LTR MaLR 207 520 -95 306 290 93 9 chr11 112729479 112729586 -36053886 + L2 LINE L2 3188 3303 -10 411 207 41 28 chr11 112730589 112730734 -36052738 - L1MC5 LINE L1 -32 7929 7783 261 289 176 13 chr11 112730741 112730900 -36052572 - MIR SINE MIR -70 192 8 190 274 20 0 chr11 112730974 112731025 -36052447 - L2 LINE L2 -6 3307 3256 331 283 9 0 chr11 112731084 112731190 -36052282 - L1MB8 LINE L1 0 6178 6072 352 226 49 29 chr11 112731190 112731292 -36052180 + L2 LINE L2 3210 3313 0 418 292 115 41 chr11 112732944 112733187 -36050285 + MIR SINE MIR 1 261 -1 485 232 194 13 chr11 112733443 112733598 -36049874 + MER5A DNA MER1_type 4 186 -3 1805 164 121 21 chr11 112734393 112734782 -36048690 - MSTA LTR MaLR 0 428 1 317 261 60 80 chr11 112735392 112735576 -36047896 - MIR SINE MIR -61 147 21 1790 138 25 68 chr11 112735649 112735925 -36047547 + L1MA7 LINE L1 5907 6162 -129 2073 134 70 17 chr11 112735925 112736269 -36047203 - THE1B LTR MaLR -2 362 1 1790 138 25 68 chr11 112736269 112736389 -36047083 + L1MA7 LINE L1 6162 6286 -5 26 0 0 0 chr11 112737197 112737223 -36046249 + AT_rich Low_complexity Low_complexity 1 26 0 482 313 80 6 chr11 112737273 112737436 -36046036 - MIR SINE MIR -77 185 11 2533 44 0 0 chr11 112738218 112738514 -36044958 - AluY SINE Alu -15 296 1 248 271 0 0 chr11 112738575 112738634 -36044838 + (CA)n Simple_repeat Simple_repeat 1 59 0 220 366 80 0 chr11 112738636 112738748 -36044724 - MIR3 SINE MIR -10 198 78 216 355 41 16 chr11 112738889 112739010 -36044462 + MIR SINE MIR 125 248 -14 1506 220 49 6 chr11 112739901 112740251 -36043221 + MLT1A1 LTR MaLR 1 365 0 255 319 164 9 chr11 112740285 112740401 -36043071 - L2 LINE L2 -35 3237 3104 548 316 97 19 chr11 112741011 112741321 -36042151 + L1ME4a LINE L1 5586 5919 -202 4354 213 49 12 chr11 112741552 112743233 -36040239 + L1PA13 LINE L1 1213 2966 -3831 3643 263 7 4 chr11 112743257 112743701 -36039771 - L1P LINE L1 -2614 3532 3091 180 0 0 0 chr11 112743701 112743721 -36039751 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3643 263 7 4 chr11 112743721 112744411 -36039061 - L1P LINE L1 -3055 3091 2395 7790 103 63 6 chr11 112744411 112745758 -36037714 + L1PBa LINE L1 1573 2995 -3867 180 111 0 0 chr11 112745798 112745825 -36037647 + (CTG)n Simple_repeat Simple_repeat 3 29 0 442 324 12 2 chr11 112746123 112746288 -36037184 + MIR SINE MIR 18 180 -68 2903 214 1 0 chr11 112746289 112746937 -36036535 + L1 LINE L1 2285 2933 -3213 2120 155 0 0 chr11 112746937 112747247 -36036225 + AluSx SINE Alu 1 310 -2 1560 180 31 25 chr11 112747267 112747622 -36035850 + LTR15 LTR ERV1 136 492 -1 3139 229 7 26 chr11 112747623 112748523 -36034949 + L1 LINE L1 2959 3841 -2305 1852 144 82 20 chr11 112748526 112748879 -36034593 - THE1C LTR MaLR 0 375 1 10266 123 31 7 chr11 112748879 112750422 -36033050 - THE1C-int LTR MaLR 0 1580 1 1384 174 54 41 chr11 112750433 112750750 -36032722 - THE1C LTR MaLR -1 374 54 1142 133 6 0 chr11 112750751 112750932 -36032540 + L1PA15 LINE L1 5598 5779 -386 1530 141 0 0 chr11 112750937 112751171 -36032301 + L1PA15 LINE L1 5926 6159 -6 2423 116 14 11 chr11 112751227 112751590 -36031882 - THE1B LTR MaLR 0 364 1 9648 110 32 39 chr11 112751600 112753181 -36030291 - THE1B-int LTR MaLR -11 1569 1 2434 121 20 3 chr11 112753181 112753537 -36029935 - THE1B LTR MaLR 0 364 3 246 266 43 77 chr11 112753570 112753718 -36029754 - MIR3 SINE MIR -68 140 5 738 216 68 11 chr11 112754715 112754891 -36028581 - MLT1A2 LTR MaLR 0 374 189 257 228 13 0 chr11 112754915 112754994 -36028478 + GA-rich Low_complexity Low_complexity 2 81 0 864 171 33 11 chr11 112754994 112755175 -36028297 - MLT1A2 LTR MaLR -189 185 1 28 48 0 0 chr11 112755616 112755658 -36027814 + AT_rich Low_complexity Low_complexity 1 42 0 592 209 170 13 chr11 112756225 112756378 -36027094 + MER5B DNA MER1_type 1 177 -1 326 289 52 30 chr11 112756774 112756909 -36026563 - L2 LINE L2 0 3313 3176 417 322 105 6 chr11 112756959 112757130 -36026342 - MER5A DNA MER1_type 0 189 2 27 29 0 0 chr11 112757652 112757686 -36025786 + AT_rich Low_complexity Low_complexity 1 34 0 245 242 182 0 chr11 112758155 112758221 -36025251 + MER81 DNA DNA 2 79 -35 21 36 0 0 chr11 112758610 112758638 -36024834 + AT_rich Low_complexity Low_complexity 1 28 0 191 405 34 11 chr11 112758641 112758730 -36024742 - L2 LINE L2 -48 3224 3134 579 278 94 16 chr11 112760572 112760763 -36022709 + MIR SINE MIR 51 256 -6 230 205 189 0 chr11 112762435 112762516 -36020956 + MIR SINE MIR 35 131 -77 187 237 11 97 chr11 112762855 112762948 -36020524 + MIR SINE MIR 128 212 -50 188 365 0 0 chr11 112763107 112763170 -36020302 + L2 LINE L2 3210 3272 0 472 251 61 84 chr11 112763358 112763621 -36019851 + MIR SINE MIR 3 259 -3 362 350 36 25 chr11 112763736 112763927 -36019545 + MIR SINE MIR 15 206 -56 5758 68 1 20 chr11 112763967 112764781 -36018691 + L1PA3 LINE L1 2 800 -5346 * 25378 32 0 2 chr11 112764779 112768791 -36014681 + L1PA3 LINE L1 2164 6167 0 8068 204 39 12 chr11 112769102 112772130 -36011342 - L1PA16 LINE L1 -2 6164 3072 1176 275 21 0 chr11 112772153 112772571 -36010901 + L1 LINE L1 2626 3052 -3094 381 294 104 48 chr11 112772591 112772929 -36010543 - MLT1H1 LTR MaLR -227 363 6 629 171 122 0 chr11 112773459 112773623 -36009849 - L1MA7 LINE L1 0 6291 6108 590 320 26 26 chr11 112774111 112774342 -36009130 + L2 LINE L2 3081 3311 -2 264 100 0 0 chr11 112775330 112775370 -36008102 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 216 336 62 26 chr11 112775371 112775484 -36007988 - L2 LINE L2 -14 3258 3142 194 347 65 8 chr11 112775818 112775942 -36007530 - L2 LINE L2 -214 3058 2928 204 135 0 0 chr11 112776934 112776971 -36006501 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 684 196 9 0 chr11 112777218 112777330 -36006142 + FRAM SINE Alu 34 146 -30 234 0 0 0 chr11 112777345 112777371 -36006101 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 1347 221 137 22 chr11 112777625 112778078 -36005394 + MLT1D LTR MaLR 1 505 0 466 307 54 18 chr11 112779818 112779984 -36003488 + L2 LINE L2 2892 3063 -250 1268 291 62 56 chr11 112780173 112781153 -36002319 - L2 LINE L2 -1 3312 2279 204 306 115 19 chr11 112782502 112782644 -36000828 - MIR3 SINE MIR -67 141 2 28715 41 1 5 chr11 112782820 112784810 -35998662 + L1PA5 LINE L1 1632 3628 -2526 2561 61 0 3 chr11 112784810 112785120 -35998352 + AluY SINE Alu 1 309 -2 28715 41 1 5 chr11 112785120 112787661 -35995811 + L1PA5 LINE L1 3628 6147 -7 200 189 0 0 chr11 112787672 112787709 -35995763 + A-rich Low_complexity Low_complexity 3 39 0 37 81 0 0 chr11 112787783 112787869 -35995603 + AT_rich Low_complexity Low_complexity 1 86 0 316 310 158 0 chr11 112788116 112788274 -35995198 - HAL1 LINE L1 -17 2490 2308 1659 270 72 20 chr11 112788280 112789013 -35994459 - HAL1 LINE L1 -439 2068 1298 27 49 0 0 chr11 112789015 112789056 -35994416 + AT_rich Low_complexity Low_complexity 1 41 0 230 269 64 0 chr11 112789082 112789160 -35994312 - HAL1 LINE L1 -2423 84 2 25 90 0 0 chr11 112789194 112789261 -35994211 + AT_rich Low_complexity Low_complexity 1 67 0 276 100 0 0 chr11 112790596 112790636 -35992836 + (GGAA)n Simple_repeat Simple_repeat 2 41 0 276 205 64 39 chr11 112790651 112790729 -35992743 - MIR SINE MIR -10 252 173 303 96 0 0 chr11 112790749 112790801 -35992671 + (TA)n Simple_repeat Simple_repeat 2 53 0 4886 130 11 3 chr11 112790802 112791754 -35991718 - L1PA15 LINE L1 -101 6064 5104 191 250 23 0 chr11 112792335 112792379 -35991093 - L2 LINE L2 -9 3263 3219 311 319 109 14 chr11 112792476 112792614 -35990858 - MER5A DNA MER1_type -3 186 36 266 295 119 42 chr11 112792742 112793003 -35990469 - L2 LINE L2 -2702 612 332 1845 150 42 0 chr11 112793403 112793690 -35989782 - AluSx SINE Alu -13 299 1 496 306 33 6 chr11 112794279 112794462 -35989010 + MIR SINE MIR 35 222 -40 956 204 0 0 chr11 112794980 112795156 -35988316 - MER45A DNA AcHobo -1 177 2 300 299 16 47 chr11 112795228 112795355 -35988117 - L2 LINE L2 0 3313 3191 1283 189 23 96 chr11 112795362 112795471 -35988001 + MER58B DNA MER1_type 6 121 -2299 1920 156 3 0 chr11 112795471 112795773 -35987699 + AluSx SINE Alu 1 303 0 1283 189 23 96 chr11 112795773 112796016 -35987456 + MER58B DNA MER1_type 121 333 -8 1286 315 39 25 chr11 112796146 112796788 -35986684 - L2 LINE L2 -223 3049 2403 341 261 270 14 chr11 112796786 112797008 -35986464 - L2 LINE L2 0 3313 3035 * 195 139 0 0 chr11 112797408 112797444 -35986028 + (CAAT)n Simple_repeat Simple_repeat 2 37 0 1912 158 0 3 chr11 112797686 112797978 -35985494 + AluJb SINE Alu 3 293 -19 3385 119 18 2 chr11 112798030 112798536 -35984936 - MER75 DNA T2_type 0 514 1 768 167 14 0 chr11 112798655 112798827 -35984645 - AluSg/x SINE Alu 0 309 136 2130 121 0 0 chr11 112798829 112799127 -35984345 - AluSx SINE Alu -4 308 11 2078 111 62 31 chr11 112799296 112799649 -35983823 + THE1B LTR MaLR 1 364 0 205 324 28 28 chr11 112799707 112799815 -35983657 + MIR3 SINE MIR 9 116 -92 342 0 0 0 chr11 112800742 112800780 -35982692 + (CA)n Simple_repeat Simple_repeat 2 39 0 440 280 114 34 chr11 112800810 112800985 -35982487 + MIR SINE MIR 64 252 -10 1646 170 24 14 chr11 112801403 112801987 -35981485 - L1M3 LINE L1 -603 5565 4980 3029 168 44 7 chr11 112802015 112802125 -35981347 + L1MB1 LINE L1 5550 5654 -514 2215 105 0 3 chr11 112802125 112802421 -35981051 + AluSg SINE Alu 1 295 -15 3029 168 44 7 chr11 112802421 112802904 -35980568 + L1MB1 LINE L1 5654 6165 -3 453 227 0 8 chr11 112802936 112803040 -35980432 - MER5A DNA MER1_type -83 106 4 1620 228 9 3 chr11 112803050 112803388 -35980084 + MER58B DNA MER1_type 2 341 0 38 39 0 0 chr11 112804617 112804669 -35978803 + AT_rich Low_complexity Low_complexity 1 52 0 235 341 22 33 chr11 112804728 112804819 -35978653 - MIR SINE MIR -153 109 20 445 189 14 21 chr11 112805193 112805336 -35978136 + GA-rich Low_complexity Low_complexity 3 144 0 797 170 137 16 chr11 112805654 112805836 -35977636 + MIR SINE MIR 50 253 -9 1297 62 29 141 chr11 112805836 112806098 -35977374 - AluYb8 SINE Alu 0 318 84 2227 113 3 0 chr11 112807110 112807419 -35976053 - AluSx SINE Alu -2 310 1 485 224 0 0 chr11 112807855 112807953 -35975519 + MER20 DNA MER1_type 122 219 0 265 270 120 0 chr11 112808097 112808197 -35975275 - L1ME3 LINE L1 -46 6116 6005 2326 241 56 8 chr11 112808304 112809067 -35974405 - L1ME3 LINE L1 -219 5951 5155 496 278 94 62 chr11 112809098 112809630 -35973842 - L1ME3 LINE L1 -1140 5006 4458 3645 151 23 8 chr11 112809856 112810471 -35973001 - Tigger1 DNA MER2_type -646 1772 1149 7956 133 24 27 chr11 112810499 112811816 -35971656 - Tigger1 DNA MER2_type -1106 1312 1 741 168 8 8 chr11 112813394 112813525 -35969947 + FLAM_C SINE Alu 2 132 -1 491 311 52 10 chr11 112813727 112813920 -35969552 - MIR SINE MIR -40 222 22 836 209 15 116 chr11 112814246 112814514 -35968958 + MIR SINE MIR 1 241 -21 198 0 0 0 chr11 112815410 112815432 -35968040 + (CA)n Simple_repeat Simple_repeat 2 23 0 5428 216 25 43 chr11 112815908 112818624 -35964848 + L1MD1 LINE L1 3580 6242 0 2160 125 13 0 chr11 112818626 112818929 -35964543 - AluSx SINE Alu -5 307 1 21 82 0 0 chr11 112819312 112819361 -35964111 + AT_rich Low_complexity Low_complexity 1 49 0 230 336 84 20 chr11 112822556 112822864 -35960608 - L2 LINE L2 -224 3089 2767 609 307 78 9 chr11 112823228 112823459 -35960013 - L3b LINE CR1 -135 1448 1202 423 0 0 0 chr11 112823510 112823557 -35959915 + (TG)n Simple_repeat Simple_repeat 2 48 0 201 304 104 35 chr11 112824163 112824278 -35959194 - L2 LINE L2 -8 3264 3142 21 0 0 0 chr11 112824455 112824476 -35958996 + AT_rich Low_complexity Low_complexity 1 21 0 328 231 112 28 chr11 112826314 112826457 -35957015 - L1ME4a LINE L1 -1 6120 5966 867 264 45 1 chr11 112826612 112826883 -35956589 - L1ME2 LINE L1 -1 6161 5867 204 273 0 0 chr11 112827422 112827466 -35956006 + MER5A DNA MER1_type 144 187 -2 * 222 235 20 0 chr11 112827466 112827512 -35955960 - MIR SINE MIR -117 145 99 387 0 0 0 chr11 112827875 112827918 -35955554 + (CA)n Simple_repeat Simple_repeat 2 44 0 390 355 92 21 chr11 112829926 112830067 -35953405 + L2 LINE L2 3122 3272 0 2193 87 0 21 chr11 112830120 112830436 -35953036 + AluSg SINE Alu 1 310 0 441 267 165 6 chr11 112831847 112832023 -35951449 + MIR SINE MIR 46 249 -13 514 281 16 0 chr11 112832370 112832498 -35950974 - L2 LINE L2 -4 3309 3180 195 367 72 43 chr11 112832627 112832766 -35950706 + MIR3 SINE MIR 3 145 -63 * 310 256 37 0 chr11 112832749 112832831 -35950641 + MIR SINE MIR 128 212 -50 259 368 53 12 chr11 112832859 112833030 -35950442 - L2 LINE L2 -229 3043 2866 231 316 98 22 chr11 112833119 112833226 -35950246 - MIR SINE MIR -61 147 31 203 122 0 24 chr11 112833787 112833828 -35949644 + (TTCC)n Simple_repeat Simple_repeat 2 41 0 908 268 17 4 chr11 112834985 112835216 -35948256 - MIR SINE MIR -11 251 18 1500 304 102 18 chr11 112835326 112836255 -35947217 + L2 LINE L2 2065 3072 -241 213 273 52 39 chr11 112837999 112838076 -35945396 + L2 LINE L2 3218 3295 -18 37472 61 2 0 chr11 112839888 112846021 -35937451 - L1PA5 LINE L1 0 6154 11 214 244 0 0 chr11 112846546 112846591 -35936881 + (CA)n Simple_repeat Simple_repeat 1 45 0 225 347 53 0 chr11 112848018 112848093 -35935379 + L2 LINE L2 3145 3223 -49 2222 102 87 0 chr11 112848302 112848637 -35934835 - THE1B LTR MaLR 0 364 1 1766 164 35 27 chr11 112848768 112849140 -35934332 + THE1C LTR MaLR 1 375 0 22 35 0 0 chr11 112850229 112850258 -35933214 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr11 112850349 112850371 -35933101 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr11 112851056 112851080 -35932392 + AT_rich Low_complexity Low_complexity 1 24 0 429 377 52 4 chr11 112851310 112851541 -35931931 - MIR SINE MIR -1 261 20 351 309 57 80 chr11 112852649 112852842 -35930630 + L1ME3A LINE L1 1872 2068 -4328 1721 153 23 65 chr11 112852842 112853149 -35930323 + AluJb SINE Alu 1 294 -18 351 309 57 80 chr11 112853149 112853479 -35929993 + L1ME3A LINE L1 2068 2383 -4013 1772 182 57 11 chr11 112853501 112853869 -35929603 + MSTD LTR MaLR 10 394 -2 6424 240 38 32 chr11 112853869 112855593 -35927879 + MSTD-int LTR MaLR 2 1735 0 1568 178 32 78 chr11 112855593 112855963 -35927509 + MSTD LTR MaLR 1 353 -43 13496 206 21 58 chr11 112855963 112861300 -35922172 + L1PA15 LINE L1 101 5631 -1185 2149 77 11 4 chr11 112861300 112861572 -35921900 + AluY SINE Alu 36 309 -2 13496 206 21 58 chr11 112861572 112861907 -35921565 + L1PA15 LINE L1 5631 5977 -839 2032 155 27 24 chr11 112861907 112862281 -35921191 - THE1C LTR MaLR 0 375 1 13496 206 21 58 chr11 112862281 112862711 -35920761 + L1PA15 LINE L1 5977 5937 -879 1027 24 24 0 chr11 112862711 112862836 -35920636 + L1PA2 LINE L1 6024 6151 -4 13496 206 21 58 chr11 112862836 112863669 -35919803 + L1PA15 LINE L1 5936 6798 -18 273 189 0 0 chr11 112863678 112863731 -35919741 + MSTD LTR MaLR 344 396 0 527 283 51 41 chr11 112863772 112864401 -35919071 + L1ME3A LINE L1 2423 3057 -3158 309 294 93 31 chr11 112864773 112865158 -35918314 - L1MEc LINE L1 -4846 1550 1142 796 259 20 5 chr11 112865158 112865355 -35918117 + MER77 LTR ERV1 404 603 -2 692 283 117 50 chr11 112865361 112866618 -35916854 + L1ME3A LINE L1 4451 5954 -285 21 36 0 0 chr11 112867094 112867122 -35916350 + AT_rich Low_complexity Low_complexity 1 28 0 1986 131 55 0 chr11 112867569 112867860 -35915612 + AluSx SINE Alu 1 307 -5 350 202 108 39 chr11 112869266 112869395 -35914077 + MIR SINE MIR 113 250 -12 590 268 147 0 chr11 112869974 112870131 -35913341 - MER5A DNA MER1_type 0 189 10 322 195 65 0 chr11 112871277 112871354 -35912118 - MER96B DNA MER1_type? -182 235 154 519 138 0 0 chr11 112871356 112871443 -35912029 + (TCCC)n Simple_repeat Simple_repeat 4 90 0 1954 149 7 3 chr11 112871433 112871876 -35911596 - AluSx SINE Alu 0 444 1 452 173 96 0 chr11 112871879 112871983 -35911489 + MER96B DNA MER1_type? 279 392 -25 741 281 22 103 chr11 112872786 112873153 -35910319 + L2 LINE L2 2569 2905 -409 402 252 104 22 chr11 112873164 112873299 -35910173 + MIR SINE MIR 89 234 -28 4066 68 22 13 chr11 112873404 112873952 -35909520 + MER41A LTR ERV1 1 553 -1 236 221 87 77 chr11 112875088 112875192 -35908280 + MIR SINE MIR 117 221 -41 1581 214 129 55 chr11 112875211 112875791 -35907681 - MLT1E3 LTR MaLR 0 624 2 227 357 96 28 chr11 112876059 112876308 -35907164 + L3b LINE CR1 1307 1572 -11 927 267 74 17 chr11 112877836 112878227 -35905245 - MLT1H1 LTR MaLR -164 378 1 527 269 61 18 chr11 112878964 112879179 -35904293 - MIR SINE MIR -30 232 9 4883 99 7 15 chr11 112879425 112880148 -35903324 - L1PA10 LINE L1 -121 6047 5329 2579 75 0 0 chr11 112880148 112880455 -35903017 - AluY SINE Alu -4 307 1 4883 99 7 15 chr11 112880455 112880475 -35902997 - L1PA10 LINE L1 -839 5329 5310 13406 142 3 12 chr11 112880475 112882837 -35900635 + L1PA10 LINE L1 2954 5295 -851 192 135 0 0 chr11 112882842 112882879 -35900593 + (TTTTTG)n Simple_repeat Simple_repeat 4 40 0 527 289 70 16 chr11 112883129 112883352 -35900120 - MIR SINE MIR -13 249 16 255 267 0 40 chr11 112883627 112883702 -35899770 + MIR3 SINE MIR 94 165 -43 222 394 71 0 chr11 112884115 112884214 -35899258 - L3 LINE CR1 -5 1572 1467 311 192 13 0 chr11 112884711 112884789 -35898683 + (TA)n Simple_repeat Simple_repeat 2 80 0 306 0 0 0 chr11 112884824 112884858 -35898614 + (TG)n Simple_repeat Simple_repeat 2 35 0 2369 83 3 6 chr11 112886046 112886358 -35897114 - AluY SINE Alu 0 311 1 758 234 21 36 chr11 112886426 112886454 -35897018 + MER5A DNA MER1_type 1 28 -161 2002 188 11 3 chr11 112886454 112886816 -35896656 - MLT1A1 LTR MaLR 0 365 1 758 234 21 36 chr11 112886816 112886979 -35896493 + MER5A DNA MER1_type 28 189 0 767 227 79 19 chr11 112887051 112887267 -35896205 - MER96B DNA MER1_type? -182 235 7 639 274 98 32 chr11 112888093 112888462 -35895010 + LTR16A1 LTR ERVL 2 394 -63 2323 322 44 23 chr11 112888509 112889724 -35893748 + HERV16 LTR ERVL 6 1246 -3750 318 263 44 22 chr11 112889988 112890125 -35893347 - LTR41 LTR ERVL -623 150 11 7599 307 58 13 chr11 112890460 112892456 -35891016 - ERVL LTR ERVL -336 5428 3243 207 0 0 0 chr11 112892456 112892479 -35890993 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7599 307 58 13 chr11 112892479 112893566 -35889906 - ERVL LTR ERVL -2521 3243 2206 682 315 32 8 chr11 112893589 112894068 -35889404 - ERVL LTR ERVL -3678 2086 1524 441 360 15 11 chr11 112894070 112894334 -35889138 - ERVL LTR ERVL -4708 1056 792 372 316 46 39 chr11 112894399 112894684 -35888788 - ERVL LTR ERVL -5125 639 353 307 222 174 87 chr11 112895094 112895301 -35888171 - LTR41 LTR ERVL -13 760 536 2282 179 5 2 chr11 112895343 112895756 -35887716 - MER44D DNA MER2_type -1 604 319 2121 181 46 18 chr11 112895765 112896201 -35887271 - Tigger7 DNA MER2_type -285 448 1 225 0 0 0 chr11 112897317 112897342 -35886130 + (A)n Simple_repeat Simple_repeat 1 25 0 728 310 23 23 chr11 112897549 112897807 -35885665 + MIR SINE MIR 5 262 0 3172 123 18 157 chr11 112897838 112898035 -35885437 + Tigger3b DNA MER2_type 13 236 -2792 588 179 67 45 chr11 112898035 112898169 -35885303 + FLAM_C SINE Alu 1 137 -6 3172 123 18 157 chr11 112898169 112898760 -35884712 + Tigger3b DNA MER2_type 236 814 -417 207 0 0 0 chr11 112899278 112899301 -35884171 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1918 175 61 0 chr11 112899301 112899696 -35883776 + Tigger3b DNA MER2_type 813 1231 -1 240 245 167 0 chr11 112899713 112899815 -35883657 + MIR SINE MIR 74 192 -70 243 0 0 0 chr11 112900268 112900295 -35883177 + (CA)n Simple_repeat Simple_repeat 2 28 0 225 0 0 0 chr11 112900295 112900320 -35883152 + (GA)n Simple_repeat Simple_repeat 1 25 0 1628 123 26 92 chr11 112900320 112900492 -35882980 - MLT2C2 LTR ERVL -48 349 206 1908 82 4 0 chr11 112900492 112900735 -35882737 - AluSp SINE Alu -29 284 41 1628 123 26 92 chr11 112900735 112900929 -35882543 - MLT2C2 LTR ERVL -191 206 1 190 316 193 9 chr11 112900946 112901060 -35882412 - L2 LINE L2 -201 3071 2937 262 392 68 0 chr11 112901326 112901502 -35881970 - MER5A DNA MER1_type -1 188 1 2309 119 0 0 chr11 112901879 112902191 -35881281 - AluJb SINE Alu 0 312 1 199 255 0 0 chr11 112904505 112904552 -35878920 - L2 LINE L2 -4 3268 3222 * 282 353 65 29 chr11 112904548 112904687 -35878785 - MIR SINE MIR -72 190 47 1235 204 21 70 chr11 112904871 112905069 -35878403 - MLT1A2 LTR MaLR -6 368 197 428 0 19 0 chr11 112905069 112905121 -35878351 + (GA)n Simple_repeat Simple_repeat 1 53 0 1235 204 21 70 chr11 112905121 112905309 -35878163 - MLT1A2 LTR MaLR -177 197 1 318 283 55 33 chr11 112909230 112909382 -35874090 + MIR SINE MIR 40 198 -64 273 341 44 22 chr11 112909697 112909788 -35873684 - L2 LINE L2 -6 3266 3174 442 321 60 0 chr11 112910510 112910678 -35872794 + MER5B DNA MER1_type 1 178 0 187 263 18 18 chr11 112912871 112912928 -35870544 - MIR3 SINE MIR -2 206 150 272 376 37 0 chr11 112913219 112913328 -35870144 - MIR SINE MIR -64 144 32 275 326 11 22 chr11 112913356 112913445 -35870027 - L2 LINE L2 -38 3275 3188 231 355 53 0 chr11 112913690 112913766 -35869706 - L2 LINE L2 -24 3289 3210 561 262 195 9 chr11 112914142 112914363 -35869109 + MIR SINE MIR 1 262 0 1617 208 6 19 chr11 112914954 112915180 -35868292 - MLT1A1 LTR MaLR 0 365 144 1697 198 30 25 chr11 112915180 112915543 -35867929 + MLT1A1 LTR MaLR 1 365 0 1617 208 6 19 chr11 112915543 112915676 -35867796 - MLT1A1 LTR MaLR -221 144 11 285 75 0 0 chr11 112916690 112916730 -35866742 + (CA)n Simple_repeat Simple_repeat 1 40 0 219 282 42 14 chr11 112917757 112917828 -35865644 - L2 LINE L2 0 3313 3241 699 180 132 0 chr11 112918361 112918528 -35864944 + MER5A DNA MER1_type 1 189 0 640 220 100 20 chr11 112919180 112919330 -35864142 + MER5A DNA MER1_type 2 163 -26 300 335 69 23 chr11 112919346 112919519 -35863953 - LTR33 LTR ERVL -340 181 1 738 71 0 0 chr11 112919587 112919685 -35863787 - AluSc SINE Alu -15 294 197 2048 251 67 29 chr11 112919686 112920315 -35863157 + L2 LINE L2 2102 2754 -560 359 322 61 41 chr11 112920316 112920611 -35862861 - MLT1I LTR MaLR 0 409 109 265 224 9 86 chr11 112920617 112920733 -35862739 - MLT1H LTR MaLR -16 533 427 230 261 78 83 chr11 112920760 112920940 -35862532 - MLT1I LTR MaLR -241 308 130 359 224 47 0 chr11 112921048 112921133 -35862339 - MLT1I LTR MaLR -302 107 19 909 241 174 35 chr11 112921155 112921643 -35861829 + L2 LINE L2 2771 3313 0 1235 161 9 14 chr11 112921860 112922077 -35861395 + MER20 DNA MER1_type 1 216 -3 378 298 43 14 chr11 112922137 112922278 -35861194 + L2 LINE L2 3169 3313 0 180 179 0 0 chr11 112922650 112922689 -35860783 + T-rich Low_complexity Low_complexity 1 39 0 1101 301 78 20 chr11 112923093 112923737 -35859735 + L2 LINE L2 2356 3056 -257 404 317 79 20 chr11 112924307 112924509 -35858963 + L2 LINE L2 3099 3312 -1 2031 85 7 4 chr11 112924781 112925051 -35858421 + AluY SINE Alu 28 298 -13 196 221 156 13 chr11 112925082 112925159 -35858313 + MIR SINE MIR 149 236 -26 372 239 51 17 chr11 112925176 112925290 -35858182 - MER82 DNA MER2_type 0 653 536 2029 120 23 20 chr11 112925290 112925639 -35857833 + THE1B LTR MaLR 1 350 -14 2284 173 21 27 chr11 112925654 112926134 -35857338 - MER82 DNA MER2_type -150 503 27 1359 191 31 51 chr11 112926162 112926401 -35857071 + MER2 DNA MER2_type 1 232 -112 1916 138 21 0 chr11 112926401 112926691 -35856781 - AluSx SINE Alu -16 296 1 1359 191 31 51 chr11 112926691 112926802 -35856670 + MER2 DNA MER2_type 232 344 0 948 193 45 10 chr11 112927270 112927472 -35856000 - MER3 DNA MER1_type 0 209 1 4479 31 6 2 chr11 112927529 112928069 -35855403 + L1PA4 LINE L1 5612 6153 -2 822 348 31 9 chr11 112928219 112928638 -35854834 + L2 LINE L2 2150 2577 -737 271 308 124 49 chr11 112928690 112928956 -35854516 + L2 LINE L2 3013 3298 -15 263 207 69 0 chr11 112929276 112929334 -35854138 - MER91C DNA MER1_type -61 79 18 203 222 19 37 chr11 112929551 112929605 -35853867 - MIR SINE MIR -133 75 23 216 216 39 118 chr11 112929801 112929903 -35853569 + L2 LINE L2 3220 3313 0 288 154 0 0 chr11 112931063 112931115 -35852357 + (TA)n Simple_repeat Simple_repeat 2 53 0 2044 103 27 3 chr11 112931876 112932168 -35851304 - AluSc SINE Alu -10 299 1 189 107 0 0 chr11 112932173 112932201 -35851271 + (T)n Simple_repeat Simple_repeat 1 28 0 21 0 0 0 chr11 112934319 112934340 -35849132 + AT_rich Low_complexity Low_complexity 1 21 0 16569 126 27 85 chr11 112935368 112938984 -35844488 + L1PA7 LINE L1 12 3416 -2730 2114 168 16 30 chr11 112938997 112939426 -35844046 - LTR3 LTR ERVK -7 425 3 13897 85 11 1 chr11 112939427 112942152 -35841320 + L1PA7 LINE L1 3410 6154 0 201 217 167 33 chr11 112942704 112942764 -35840708 - MIR SINE MIR -108 154 87 2365 106 3 0 chr11 112944552 112944864 -35838608 - AluSp SINE Alu 0 313 1 297 246 79 44 chr11 112946065 112946179 -35837293 - MIR3 SINE MIR -76 132 15 542 170 9 47 chr11 112946550 112946656 -35836816 - Tigger5 DNA MER2_type 0 2323 2222 948 230 10 0 chr11 112946874 112947078 -35836394 - MER3 DNA MER1_type -1 208 3 1176 220 53 88 chr11 112947449 112947614 -35835858 + MER39 LTR ERV1 231 400 -185 1432 162 6 100 chr11 112947614 112947935 -35835537 - AluJo SINE Alu -11 291 1 1176 220 53 88 chr11 112947935 112948259 -35835213 + MER39 LTR ERV1 400 585 0 3994 58 19 0 chr11 112949877 112950390 -35833082 - L1PA7 LINE L1 -8 6146 5624 241 265 46 86 chr11 112950507 112950658 -35832814 - MIR SINE MIR -56 206 62 302 182 0 0 chr11 112950734 112950789 -35832683 - L1MC4 LINE L1 -1340 6702 6648 2328 73 17 0 chr11 112950797 112951085 -35832387 - AluSq SINE Alu -20 293 1 547 310 53 40 chr11 112951119 112951345 -35832127 + MIR SINE MIR 12 240 -22 680 331 11 0 chr11 112951729 112951913 -35831559 - MER91A DNA MER1_type -10 186 1 22 0 0 0 chr11 112952583 112952605 -35830867 + AT_rich Low_complexity Low_complexity 1 22 0 351 250 81 44 chr11 112952786 112952922 -35830550 + MIR SINE MIR 2 142 -120 478 264 16 88 chr11 112955495 112955677 -35827795 - MIR SINE MIR -48 214 46 319 176 11 110 chr11 112956232 112956323 -35827149 - MLT1D LTR MaLR -50 455 374 1312 153 5 0 chr11 112956632 112956848 -35826624 - AluSg/x SINE Alu 0 309 93 1670 155 26 7 chr11 112957207 112957562 -35825910 + Tigger5 DNA MER2_type 1 2321 -2 505 254 51 34 chr11 112958697 112958874 -35824598 - MIR SINE MIR -13 249 70 256 342 130 0 chr11 112959127 112959288 -35824184 + MIR SINE MIR 13 194 -68 1952 152 8 72 chr11 112959537 112959926 -35823546 - THE1B LTR MaLR 0 364 1 311 292 34 67 chr11 112960841 112961019 -35822453 - MIR SINE MIR -71 191 20 185 83 28 0 chr11 112961860 112961896 -35821576 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1671 164 4 7 chr11 112961901 112962175 -35821297 - AluJo SINE Alu -34 278 6 29 28 0 0 chr11 112962254 112962290 -35821182 + AT_rich Low_complexity Low_complexity 1 36 0 10612 26 0 0 chr11 112962610 112964627 -35818845 - L1PA4 LINE L1 -3 6152 4136 312 273 13 0 chr11 112966065 112966142 -35817330 - L2 LINE L2 -5 3308 3231 429 254 17 55 chr11 112966152 112966333 -35817139 - MER5B DNA MER1_type -1 177 4 343 287 93 23 chr11 112966616 112966745 -35816727 - MIR SINE MIR -91 171 34 200 347 41 25 chr11 112967841 112967962 -35815510 + MIR SINE MIR 25 147 -61 1350 174 8 8 chr11 112968216 112968452 -35815020 + MER46A DNA MER2_type 1 236 0 420 311 83 44 chr11 112973016 112973196 -35810276 + MIR SINE MIR 50 236 -26 313 54 0 0 chr11 112973946 112973983 -35809489 + L1PA10 LINE L1 6056 6092 -76 186 43 0 0 chr11 112974001 112974024 -35809448 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 2397 101 0 0 chr11 112974051 112974358 -35809114 - AluSx SINE Alu -5 307 1 206 323 135 0 chr11 112974661 112974757 -35808715 - L2 LINE L2 -5 3267 3159 324 310 11 58 chr11 112975025 112975199 -35808273 - L2 LINE L2 -943 2371 2206 366 347 20 20 chr11 112975251 112975322 -35808150 - MIR3 SINE MIR -14 194 124 2076 108 3 49 chr11 112975322 112975663 -35807809 + AluSq SINE Alu 1 327 0 366 347 20 20 chr11 112975663 112975740 -35807732 - MIR3 SINE MIR -83 125 45 902 293 89 27 chr11 112976377 112977034 -35806438 + L2 LINE L2 2584 3277 -36 341 258 17 67 chr11 112977621 112977741 -35805731 - MIR SINE MIR -75 133 20 26 50 0 0 chr11 112977802 112977842 -35805630 + AT_rich Low_complexity Low_complexity 1 40 0 203 232 58 0 chr11 112978199 112978268 -35805204 + (CATA)n Simple_repeat Simple_repeat 2 74 0 2910 0 0 0 chr11 112979938 112980249 -35803223 + AluYa5 SINE Alu 1 311 0 822 254 10 22 chr11 112980689 112981000 -35802472 + AluYa5 SINE Alu 5 311 0 31 44 0 0 chr11 112981584 112981629 -35801843 + AT_rich Low_complexity Low_complexity 1 45 0 7324 33 7 0 chr11 112981888 112983067 -35800405 - L1PA3 LINE L1 -20 6135 4952 3427 23 0 0 chr11 112983067 112983466 -35800006 + L1PA3 LINE L1 4535 4933 -1213 203 390 0 21 chr11 112983902 112983997 -35799475 - MIR SINE MIR -12 250 158 219 133 0 0 chr11 112984391 112984421 -35799051 + L2 LINE L2 3217 3246 -26 349 273 33 78 chr11 112986419 112986490 -35796982 + L2 LINE L2 3083 3156 -157 1361 222 54 17 chr11 112986490 112986842 -35796630 - MLT1A1 LTR MaLR 0 365 1 349 273 33 78 chr11 112986842 112987012 -35796460 + L2 LINE L2 3156 3313 0 258 214 18 0 chr11 112987065 112987121 -35796351 + L2 LINE L2 3216 3272 0 287 265 68 51 chr11 112987479 112987596 -35795876 - L2 LINE L2 -2 3311 3193 440 271 85 6 chr11 112988454 112988631 -35794841 + MIR SINE MIR 18 208 -54 787 257 48 9 chr11 112988755 112988965 -35794507 + MIR SINE MIR 26 243 -19 272 224 45 15 chr11 112989360 112989427 -35794045 - L2 LINE L2 -22 3291 3223 1038 301 46 12 chr11 112989853 112990199 -35793273 + MLT1I LTR MaLR 35 392 -17 204 242 0 76 chr11 112990255 112990321 -35793151 - MIR SINE MIR -127 81 21 279 309 75 50 chr11 112992634 112992835 -35790637 + L2 LINE L2 295 500 -2814 676 354 143 27 chr11 112993613 112994896 -35788576 + L2 LINE L2 1678 3096 -176 209 222 148 0 chr11 112994944 112994998 -35788474 + L2 LINE L2 3250 3311 -2 198 0 0 0 chr11 112995281 112995303 -35788169 + (T)n Simple_repeat Simple_repeat 1 22 0 189 0 0 0 chr11 112996377 112996398 -35787074 + (T)n Simple_repeat Simple_repeat 1 21 0 254 297 24 127 chr11 112997443 112997813 -35785659 + L3b LINE CR1 1105 1436 -147 942 167 8 96 chr11 112999045 112999284 -35784188 - MER20 DNA MER1_type -1 218 1 378 276 80 50 chr11 112999834 113000033 -35783439 - L2 LINE L2 0 3313 3109 2182 85 0 34 chr11 113000037 113000331 -35783141 - AluY SINE Alu -12 299 16 216 349 0 12 chr11 113000517 113000603 -35782869 - MIR SINE MIR -75 133 49 273 307 78 65 chr11 113000696 113000989 -35782483 - L2 LINE L2 -428 2886 2590 10583 80 8 41 chr11 113001354 113003798 -35779674 - L1PA8 LINE L1 -1 6171 3802 4224 90 8 3 chr11 113003798 113004409 -35779063 + L1PA8 LINE L1 3196 3809 -2337 331 285 54 31 chr11 113005862 113005992 -35777480 - MER5B DNA MER1_type -1 177 45 22 35 0 0 chr11 113006917 113006946 -35776526 + AT_rich Low_complexity Low_complexity 1 29 0 1183 216 93 38 chr11 113007542 113007885 -35775587 + MLT1A1 LTR MaLR 1 362 -3 1735 147 96 67 chr11 113007913 113008329 -35775143 + MSTC LTR MaLR 1 428 0 284 330 163 19 chr11 113008357 113008572 -35774900 - MIR SINE MIR 0 262 17 211 245 202 0 chr11 113009241 113009335 -35774137 - L2 LINE L2 -15 3298 3186 7443 152 26 9 chr11 113009370 113011475 -35771997 + L1PA13 LINE L1 4046 6163 0 26 0 0 0 chr11 113011677 113011703 -35771769 + AT_rich Low_complexity Low_complexity 1 26 0 386 178 59 6 chr11 113011703 113011872 -35771600 + (TA)n Simple_repeat Simple_repeat 2 179 0 344 216 34 17 chr11 113011887 113012063 -35771409 + (TTTAA)n Simple_repeat Simple_repeat 1 179 0 * 442 253 0 6 chr11 113011956 113012188 -35771284 + (TTTA)n Simple_repeat Simple_repeat 1 230 0 1611 169 21 18 chr11 113012188 113012472 -35771000 - AluJo SINE Alu -24 288 4 4078 129 4 67 chr11 113013505 113014239 -35769233 + LTR8 LTR ERV1 2 689 -2 188 297 47 0 chr11 113015682 113015746 -35767726 + MIR SINE MIR 75 141 -121 296 312 0 46 chr11 113015891 113016000 -35767472 - MIR SINE MIR -20 242 139 261 234 0 0 chr11 113016049 113016096 -35767376 + L2 LINE L2 3188 3234 -79 234 250 270 10 chr11 113016775 113016875 -35766597 - L2 LINE L2 0 3313 3188 218 222 0 16 chr11 113016883 113016946 -35766526 + (TAA)n Simple_repeat Simple_repeat 1 62 0 487 322 61 47 chr11 113017234 113017597 -35765875 + L2 LINE L2 2921 3288 -25 2417 80 0 0 chr11 113017831 113018132 -35765340 + AluY SINE Alu 1 301 -10 245 241 0 17 chr11 113018282 113018340 -35765132 + CT-rich Low_complexity Low_complexity 3 59 0 412 200 126 37 chr11 113018711 113018846 -35764626 - MIR SINE MIR 0 262 116 217 270 197 36 chr11 113019378 113019515 -35763957 - MIR SINE MIR -12 250 92 279 0 0 0 chr11 113020029 113020060 -35763412 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1461 175 56 8 chr11 113020062 113020201 -35763271 - AluJb SINE Alu -31 281 150 189 0 0 0 chr11 113020201 113020222 -35763250 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1461 175 56 8 chr11 113020222 113020350 -35763122 - AluJb SINE Alu -162 150 1 22 0 0 0 chr11 113021597 113021619 -35761853 + AT_rich Low_complexity Low_complexity 1 22 0 199 258 195 39 chr11 113021624 113021752 -35761720 + L3 LINE CR1 1062 1209 -368 1795 181 3 7 chr11 113021854 113022153 -35761319 - AluJo SINE Alu -14 298 1 401 309 15 15 chr11 113022171 113022307 -35761165 + L2 LINE L2 3137 3272 0 249 355 145 20 chr11 113022368 113022568 -35760904 + L3 LINE CR1 1351 1575 -2 236 246 18 100 chr11 113024458 113024568 -35758904 + MIR SINE MIR 116 216 -46 2438 179 113 106 chr11 113025060 113025865 -35757607 + MER21B LTR ERV1 1 811 -52 184 245 61 0 chr11 113027411 113027460 -35756012 + L2 LINE L2 3262 3313 0 303 300 14 57 chr11 113027858 113027998 -35755474 + MER77 LTR ERV1 64 197 -408 * 1474 269 51 72 chr11 113027971 113028599 -35754873 + MER21B LTR ERV1 98 712 -151 1682 172 58 17 chr11 113029220 113029580 -35753892 + THE1C LTR MaLR 1 375 0 645 271 19 9 chr11 113029670 113029884 -35753588 + MER113 DNA MER1_type? 2 217 -304 1570 172 74 21 chr11 113031215 113031541 -35751931 - MER2 DNA MER2_type 0 344 2 212 179 0 0 chr11 113031705 113031744 -35751728 - MIR SINE MIR -24 238 200 726 233 16 63 chr11 113031809 113031847 -35751625 - MIR SINE MIR -78 184 146 2383 99 0 0 chr11 113031847 113032150 -35751322 - AluSx SINE Alu -5 307 5 726 233 16 63 chr11 113032150 113032300 -35751172 - MIR SINE MIR -116 146 5 660 260 99 25 chr11 113032559 113032801 -35750671 - MIR SINE MIR 0 262 3 899 249 0 0 chr11 113033112 113033301 -35750171 + MER5A DNA MER1_type 1 189 0 3736 162 117 8 chr11 113033414 113034159 -35749313 + LTR1B LTR ERV1 1 826 0 274 260 104 0 chr11 113035722 113035818 -35747654 + L2 LINE L2 3158 3263 -9 372 43 0 0 chr11 113036406 113036452 -35747020 + (TTA)n Simple_repeat Simple_repeat 1 46 0 33 25 0 0 chr11 113038363 113038403 -35745069 + AT_rich Low_complexity Low_complexity 1 40 0 537 309 81 64 chr11 113038452 113039155 -35744317 + HsTC2 DNA Tc2 8 722 -1176 470 208 99 0 chr11 113039671 113039772 -35743700 - MLT1I LTR MaLR -46 363 253 2059 175 149 69 chr11 113039857 113040576 -35742896 + LTR1B LTR ERV1 1 777 -8 337 287 111 33 chr11 113040948 113041129 -35742343 + MER117 DNA MER1_type 2 196 -1 1607 183 4 4 chr11 113041215 113041511 -35741961 + AluJo SINE Alu 15 310 0 990 258 128 32 chr11 113043096 113043534 -35739938 - MLT1L LTR MaLR -17 598 119 1796 204 17 3 chr11 113043932 113044289 -35739183 + MLT1A1 LTR MaLR 1 362 -3 186 327 136 18 chr11 113045153 113045263 -35738209 + L2 LINE L2 3191 3313 0 613 315 138 34 chr11 113045890 113046274 -35737198 + L2 LINE L2 2845 3268 -4 329 339 0 15 chr11 113046636 113046766 -35736706 + MER117 DNA MER1_type 56 183 -14 326 308 58 25 chr11 113046834 113046954 -35736518 + MIR SINE MIR 65 188 -74 181 280 40 40 chr11 113048081 113048156 -35735316 - MER5C DNA MER1_type -249 75 1 466 272 35 76 chr11 113048292 113048750 -35734722 + MLT1H LTR MaLR 1 525 -17 182 261 15 15 chr11 113049685 113049815 -35733657 + (TA)n Simple_repeat Simple_repeat 1 130 0 21 36 0 0 chr11 113049885 113049913 -35733559 + AT_rich Low_complexity Low_complexity 1 28 0 1596 170 119 0 chr11 113051434 113051745 -35731727 + MER7A DNA MER2_type 1 346 0 395 278 0 26 chr11 113052460 113052575 -35730897 - LTR16C LTR ERVL -1 490 379 422 286 8 23 chr11 113054453 113054586 -35728886 - MIR SINE MIR -72 190 60 2449 66 7 0 chr11 113054896 113055197 -35728275 + AluY SINE Alu 1 303 -8 186 103 0 0 chr11 113055405 113055434 -35728038 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 1903 153 31 6 chr11 113056892 113057244 -35726228 + MER46B DNA MER2_type 1 236 0 6459 89 7 3 chr11 113057951 113059150 -35724322 + L1PA10 LINE L1 4967 6168 0 204 40 0 0 chr11 113059186 113059211 -35724261 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 21 36 0 0 chr11 113059836 113059864 -35723608 + AT_rich Low_complexity Low_complexity 1 28 0 234 0 0 0 chr11 113060034 113060060 -35723412 + (TG)n Simple_repeat Simple_repeat 2 27 0 26 0 0 0 chr11 113060060 113060086 -35723386 + AT_rich Low_complexity Low_complexity 1 26 0 220 186 34 34 chr11 113060290 113060349 -35723123 + L3 LINE CR1 1512 1570 -7 21 36 0 0 chr11 113060936 113060964 -35722508 + AT_rich Low_complexity Low_complexity 1 28 0 349 323 53 30 chr11 113061203 113061336 -35722136 + L2 LINE L2 3122 3257 -15 2437 71 0 0 chr11 113061630 113061925 -35721547 - AluY SINE Alu -15 296 2 228 67 0 0 chr11 113062537 113062567 -35720905 + (T)n Simple_repeat Simple_repeat 1 30 0 240 369 107 44 chr11 113062814 113063039 -35720433 + L2 LINE L2 2998 3236 -36 1771 165 0 17 chr11 113063146 113063437 -35720035 + AluJo SINE Alu 6 291 -21 21 0 0 0 chr11 113063783 113063804 -35719668 + GC_rich Low_complexity Low_complexity 1 21 0 490 311 98 35 chr11 113066943 113067258 -35716214 - L3 LINE CR1 -123 1454 1120 345 316 44 15 chr11 113067521 113067657 -35715815 - MIR SINE MIR -11 251 112 234 173 160 53 chr11 113067687 113067762 -35715710 + MER112 DNA MER1_type 1 83 -177 211 317 17 0 chr11 113070201 113070261 -35713211 - L2 LINE L2 -4 3309 3249 2128 188 54 2 chr11 113070532 113070937 -35712535 - MSTB LTR MaLR 0 426 1 24 67 0 0 chr11 113071498 113071543 -35711929 + AT_rich Low_complexity Low_complexity 1 45 0 2141 89 0 0 chr11 113071738 113072045 -35711427 + AluY SINE Alu 1 307 0 6656 65 3 0 chr11 113073727 113074573 -35708899 - L1PA7 LINE L1 -3 6151 5303 280 368 8 38 chr11 113075703 113075836 -35707636 - L2 LINE L2 0 3272 3144 499 232 44 57 chr11 113075871 113076064 -35707408 - MIR SINE MIR -23 239 47 540 321 96 26 chr11 113076098 113076518 -35706954 - L2 LINE L2 -145 3168 2700 219 36 0 0 chr11 113076520 113076548 -35706924 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1374 303 99 29 chr11 113076563 113077431 -35706041 - L2 LINE L2 -1154 2160 1232 447 280 23 15 chr11 113077462 113077594 -35705878 + MIR3 SINE MIR 12 144 -64 22 0 0 0 chr11 113078798 113078820 -35704652 + AT_rich Low_complexity Low_complexity 1 22 0 1961 201 3 0 chr11 113078827 113079196 -35704276 - L1MB5 LINE L1 0 6174 5805 306 219 122 41 chr11 113081394 113081517 -35701955 + L1M LINE L1 5296 5428 -736 228 298 170 45 chr11 113081535 113081894 -35701578 - L2 LINE L2 -1386 1928 1525 198 289 171 0 chr11 113082280 113082356 -35701116 + L2 LINE L2 3225 3313 0 237 326 95 7 chr11 113082368 113082515 -35700957 + MIR SINE MIR 103 262 0 1182 208 32 65 chr11 113083279 113083650 -35699822 + MLT1C LTR MaLR 1 359 -108 24 53 0 0 chr11 113083694 113083732 -35699740 + AT_rich Low_complexity Low_complexity 1 38 0 3035 215 63 43 chr11 113083743 113083829 -35699643 + L1ME1 LINE L1 4312 4395 -1939 1940 118 4 4 chr11 113083829 113084108 -35699364 + AluSc SINE Alu 1 279 -30 3035 215 63 43 chr11 113084108 113084374 -35699098 + L1ME1 LINE L1 4395 4654 -1680 1653 159 7 0 chr11 113084374 113084669 -35698803 + L1PA16 LINE L1 5861 6157 -9 3035 215 63 43 chr11 113084669 113086146 -35697326 + L1ME1 LINE L1 4654 6334 0 189 298 181 21 chr11 113086777 113086871 -35696601 + L2 LINE L2 3175 3283 -30 269 120 187 13 chr11 113087727 113087802 -35695670 - L1MB8 LINE L1 0 6178 6091 1148 164 27 0 chr11 113087824 113088044 -35695428 - L1MB4 LINE L1 -12 6168 5943 515 144 33 0 chr11 113088048 113088138 -35695334 - L1MB4 LINE L1 -288 5892 5800 351 272 73 38 chr11 113088136 113088397 -35695075 + L1M4 LINE L1 5002 5271 -875 * 356 136 0 15 chr11 113088457 113088533 -35694939 + L1M4 LINE L1 5730 5801 -373 1966 145 13 0 chr11 113088581 113088884 -35694588 - AluSx SINE Alu -5 307 1 257 0 30 0 chr11 113090308 113090341 -35693131 + (GA)n Simple_repeat Simple_repeat 1 34 0 1807 132 69 36 chr11 113090526 113090889 -35692583 - THE1C LTR MaLR 0 375 1 3354 88 9 0 chr11 113091851 113092292 -35691180 + MLT2A2 LTR ERVL 1 445 -8 21 0 0 0 chr11 113092508 113092529 -35690943 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr11 113092981 113093003 -35690469 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr11 113093255 113093277 -35690195 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr11 113093588 113093612 -35689860 + AT_rich Low_complexity Low_complexity 1 24 0 220 250 0 0 chr11 113093938 113093990 -35689482 - L2 LINE L2 -16 3297 3246 258 237 51 17 chr11 113095195 113095254 -35688218 - MIR SINE MIR -174 88 28 4139 203 89 62 chr11 113095707 113096566 -35686906 - L1MC4 LINE L1 -32 8010 7176 2457 64 0 0 chr11 113096566 113096861 -35686611 + AluY SINE Alu 1 295 -16 4139 203 89 62 chr11 113096861 113097620 -35685852 - L1MC4 LINE L1 -866 7176 6237 1411 270 26 14 chr11 113097633 113098052 -35685420 - L1MC4 LINE L1 -1907 5901 5478 22 0 0 0 chr11 113098059 113098081 -35685391 + AT_rich Low_complexity Low_complexity 1 22 0 438 178 93 17 chr11 113098095 113098213 -35685259 - L1MB1 LINE L1 -22 6146 6020 258 250 0 0 chr11 113098217 113098297 -35685175 - L1MC4 LINE L1 -2359 5449 5370 238 227 10 10 chr11 113098312 113098409 -35685063 + (TATATG)n Simple_repeat Simple_repeat 2 98 0 202 74 0 0 chr11 113098410 113098437 -35685035 + (TG)n Simple_repeat Simple_repeat 2 28 0 380 298 27 86 chr11 113098460 113098796 -35684676 - L1MC4 LINE L1 -817 5329 5014 801 289 85 58 chr11 113098798 113099798 -35683674 - L1MC4 LINE L1 -1214 4932 3906 316 284 200 41 chr11 113100994 113101339 -35682133 + MLT1H LTR MaLR 137 536 -13 237 256 22 44 chr11 113101650 113101740 -35681732 + L1MC/D LINE L1 5840 5927 -432 33 43 0 0 chr11 113101900 113101947 -35681525 + AT_rich Low_complexity Low_complexity 1 47 0 988 153 11 34 chr11 113102481 113102657 -35680815 - AluJo SINE Alu -15 297 126 2012 155 10 39 chr11 113102908 113103294 -35680178 + THE1C LTR MaLR 1 375 0 192 326 10 31 chr11 113103551 113103649 -35679823 - MER5B DNA MER1_type -6 172 77 2430 148 7 47 chr11 113103685 113104137 -35679335 + Tigger2a DNA MER2_type 1 434 0 2190 122 0 3 chr11 113106363 113106674 -35676798 - AluSg SINE Alu 0 310 1 1748 242 13 12 chr11 113107719 113108109 -35675363 + MLT1F LTR MaLR 104 488 -54 241 196 18 0 chr11 113108153 113108209 -35675263 + MLT1F LTR MaLR 484 540 -2 1662 164 46 0 chr11 113109613 113109894 -35673578 - AluJo SINE Alu -5 307 14 246 111 56 56 chr11 113110839 113110893 -35672579 - MER53 DNA DNA -3 186 133 395 186 0 0 chr11 113110893 113110963 -35672509 + HsTC2 DNA Tc2 780 849 -1049 648 379 85 5 chr11 113111069 113111494 -35671978 - L2 LINE L2 -3 3310 2852 208 53 53 0 chr11 113111595 113111633 -35671839 + (TA)n Simple_repeat Simple_repeat 1 40 0 37 62 0 0 chr11 113111638 113111703 -35671769 + AT_rich Low_complexity Low_complexity 1 65 0 185 145 21 55 chr11 113111711 113111856 -35671616 + (TATAA)n Simple_repeat Simple_repeat 5 144 0 1393 236 121 34 chr11 113111932 113112462 -35671010 - L1MD2 LINE L1 -41 6318 5743 1809 223 41 11 chr11 113112467 113112929 -35670543 - Charlie1b DNA MER1_type -31 492 17 484 304 143 33 chr11 113112944 113113280 -35670192 - L2 LINE L2 -507 2807 2435 1145 114 17 17 chr11 113114010 113114185 -35669287 - AluSc SINE Alu -3 306 132 2033 111 7 42 chr11 113114185 113114492 -35668980 - AluSq SINE Alu -12 301 6 207 313 0 16 chr11 113114896 113114960 -35668512 + L2 LINE L2 2865 2927 -345 204 340 48 10 chr11 113115123 113115226 -35668246 + L2 LINE L2 3157 3263 -9 1952 138 0 30 chr11 113117331 113117635 -35665837 + AluSx SINE Alu 4 298 -14 363 282 19 146 chr11 113118968 113119181 -35664291 - MIR SINE MIR -46 216 31 339 304 18 9 chr11 113119258 113119370 -35664102 - MIR SINE MIR -26 236 124 273 57 0 0 chr11 113120295 113120330 -35663142 + (CA)n Simple_repeat Simple_repeat 1 35 0 1269 310 149 41 chr11 113120542 113122317 -35661155 + L2 LINE L2 1273 3226 -46 201 284 15 15 chr11 113122551 113122618 -35660854 + GA-rich Low_complexity Low_complexity 4 70 0 335 250 132 37 chr11 113124408 113124544 -35658928 + MIR SINE MIR 102 250 -12 446 280 119 45 chr11 113124616 113124859 -35658613 - MIR SINE MIR 0 262 2 1455 171 0 39 chr11 113125497 113125778 -35657694 - AluJb SINE Alu -8 304 35 420 312 58 7 chr11 113126051 113126189 -35657283 - MIR SINE MIR -77 185 41 1537 184 33 0 chr11 113126354 113126667 -35656805 + AluJb SINE Alu 5 326 0 1311 240 121 22 chr11 113126709 113127164 -35656308 - Zaphod DNA AcHobo -3255 776 277 16693 37 13 1 chr11 113127230 113130052 -35653420 + L1PA4 LINE L1 3266 6126 -29 639 312 14 18 chr11 113130053 113130274 -35653198 + MIR SINE MIR 43 262 0 354 115 0 0 chr11 113130452 113130513 -35652959 + (TA)n Simple_repeat Simple_repeat 1 61 0 5959 151 57 32 chr11 113130559 113131761 -35651711 + Tigger3b DNA MER2_type 1 1231 0 391 226 157 60 chr11 113132006 113132223 -35651249 - MIR SINE MIR -3 259 22 2095 237 102 10 chr11 113133684 113133736 -35649736 + MLT1E1 LTR MaLR 4 50 -604 2011 141 0 3 chr11 113133736 113134034 -35649438 - AluSx SINE Alu -15 297 1 2095 237 102 10 chr11 113134034 113134577 -35648895 + MLT1E1 LTR MaLR 50 654 0 565 224 118 6 chr11 113134701 113134871 -35648601 + MIR SINE MIR 72 260 -2 22 56 0 0 chr11 113134971 113135007 -35648465 + AT_rich Low_complexity Low_complexity 1 36 0 7272 47 5 0 chr11 113135152 113136201 -35647271 + L1PA5 LINE L1 5097 6152 -2 425 320 33 2 chr11 113136223 113136401 -35647071 + MIR SINE MIR 16 197 -65 504 337 50 20 chr11 113136461 113136802 -35646670 + L1MC4a LINE L1 5561 5911 -1897 488 283 121 45 chr11 113136812 113137035 -35646437 + MIR SINE MIR 2 241 -21 32 57 0 0 chr11 113137286 113137339 -35646133 + AT_rich Low_complexity Low_complexity 1 53 0 1608 174 34 13 chr11 113138249 113138547 -35644925 - AluJb SINE Alu -8 304 1 1317 101 14 0 chr11 113139181 113139389 -35644083 - L1PA13 LINE L1 -666 5495 5285 4294 101 17 12 chr11 113139389 113140033 -35643439 + L1PA13 LINE L1 5517 6163 0 263 301 44 64 chr11 113140220 113140423 -35643049 - L2 LINE L2 -23 3290 3092 3787 179 40 18 chr11 113140429 113141833 -35641639 - L1MC1 LINE L1 -503 5830 4404 2348 130 3 0 chr11 113141891 113142259 -35641213 - L1PB1 LINE L1 -1 6150 5782 206 180 11 34 chr11 113142259 113142348 -35641124 + (TA)n Simple_repeat Simple_repeat 1 87 0 3526 156 8 4 chr11 113142408 113143469 -35640003 - L1PB1 LINE L1 -380 5771 4704 5647 190 0 6 chr11 113143475 113143670 -35639802 + L1 LINE L1 3591 3786 -2360 2518 79 41 0 chr11 113143670 113144011 -35639461 + THE1A LTR MaLR 1 355 0 5647 190 0 6 chr11 113144011 113144937 -35638535 + L1 LINE L1 3786 4705 -1441 650 275 0 0 chr11 113144937 113145126 -35638346 - L1MC1 LINE L1 -1773 4373 4185 1516 218 14 29 chr11 113145126 113145470 -35638002 + MLT1A1 LTR MaLR 1 339 -26 438 252 17 8 chr11 113145486 113145605 -35637867 - L1MC1 LINE L1 -1961 4185 4066 182 46 56 139 chr11 113145949 113146057 -35637415 + (TATAA)n Simple_repeat Simple_repeat 1 99 0 32 0 0 0 chr11 113146157 113146189 -35637283 + AT_rich Low_complexity Low_complexity 1 32 0 364 99 70 23 chr11 113146195 113146366 -35637106 + (TA)n Simple_repeat Simple_repeat 2 180 0 441 203 16 33 chr11 113146369 113146602 -35636870 + (TATAA)n Simple_repeat Simple_repeat 1 229 0 221 372 50 22 chr11 113146702 113146882 -35636590 + L2 LINE L2 2456 2640 -674 181 425 16 16 chr11 113147450 113147577 -35635895 + L2 LINE L2 3126 3252 -20 194 264 0 38 chr11 113148001 113148052 -35635420 - L3 LINE CR1 -3 1574 1526 932 236 74 29 chr11 113148052 113148362 -35635110 - MER5C DNA MER1_type 0 324 1 227 322 83 0 chr11 113148422 113148543 -35634929 - MIR SINE MIR -18 244 114 1839 194 34 121 chr11 113148616 113149286 -35634186 + LTR9 LTR ERV1 1 612 0 270 294 114 83 chr11 113150522 113150811 -35632661 - L2 LINE L2 -890 2424 2127 236 361 45 15 chr11 113150877 113151010 -35632462 + L3 LINE CR1 1317 1453 -124 605 268 139 5 chr11 113151801 113151995 -35631477 + MIR SINE MIR 1 220 -42 325 352 56 32 chr11 113153123 113153248 -35630224 - L2 LINE L2 -12 3260 3133 600 260 17 23 chr11 113153834 113154011 -35629461 - MER5B DNA MER1_type -1 177 2 201 74 0 0 chr11 113154305 113154332 -35629140 + (TG)n Simple_repeat Simple_repeat 1 27 0 494 282 92 62 chr11 113155244 113155471 -35628001 + MIR SINE MIR 29 262 0 1987 125 31 0 chr11 113156331 113156619 -35626853 + AluSq SINE Alu 1 297 -16 412 296 129 30 chr11 113157198 113157462 -35626010 + L2 LINE L2 2875 3164 -149 905 161 33 9 chr11 113157467 113157678 -35625794 - HsTC2 DNA Tc2 -3 1895 1680 1273 250 68 18 chr11 113157678 113158062 -35625410 - HsTC2 DNA Tc2 -1492 406 4 239 237 200 67 chr11 113158071 113158206 -35625266 + L2 LINE L2 3159 3311 -2 234 0 0 0 chr11 113158406 113158432 -35625040 + (A)n Simple_repeat Simple_repeat 1 26 0 185 0 40 0 chr11 113158577 113158602 -35624870 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 398 202 45 11 chr11 113159482 113159571 -35623901 - MLT1I LTR MaLR 0 409 318 239 286 13 13 chr11 113159628 113159705 -35623767 - MLT1I LTR MaLR -227 182 106 183 298 0 0 chr11 113160281 113160328 -35623144 - L2 LINE L2 -13 3259 3213 182 250 216 11 chr11 113160387 113160475 -35622997 - MIR SINE MIR -133 129 24 252 270 48 0 chr11 113161172 113161235 -35622237 - L2 LINE L2 0 3313 3248 232 260 0 0 chr11 113161693 113161743 -35621729 + MIR SINE MIR 208 257 -5 285 325 54 48 chr11 113162238 113162404 -35621068 - L2 LINE L2 -896 2418 2252 373 271 107 57 chr11 113162907 113163151 -35620321 + HAL1 LINE L1 2251 2506 -1 409 262 47 0 chr11 113163435 113163542 -35619930 - MIR3 SINE MIR -2 206 95 205 256 0 0 chr11 113163817 113163856 -35619616 - L2 LINE L2 -76 3196 3158 234 0 0 0 chr11 113164256 113164282 -35619190 + (T)n Simple_repeat Simple_repeat 1 26 0 365 299 147 0 chr11 113165035 113165192 -35618280 + MER5A DNA MER1_type 8 187 -2 2022 141 0 0 chr11 113165299 113165589 -35617883 - AluSx SINE Alu -22 290 1 2453 13 3 74 chr11 113166283 113166625 -35616847 + AluYb8 SINE Alu 1 320 0 319 179 54 0 chr11 113167793 113167849 -35615623 + MLT1D LTR MaLR 27 85 -420 418 21 0 0 chr11 113167868 113167915 -35615557 + U6 snRNA snRNA 1 47 -60 582 211 0 134 chr11 113167925 113168119 -35615353 - FAM SINE Alu -12 173 6 420 213 36 147 chr11 113168130 113168480 -35614992 + MLT1D LTR MaLR 95 505 0 266 274 29 10 chr11 113168624 113168726 -35614746 + (CATATA)n Simple_repeat Simple_repeat 4 107 0 444 290 7 13 chr11 113168748 113168903 -35614569 + (TA)n Simple_repeat Simple_repeat 1 154 0 182 174 22 0 chr11 113168944 113168990 -35614482 + (TATATG)n Simple_repeat Simple_repeat 5 51 0 228 298 107 12 chr11 113170192 113170276 -35613196 + L2 LINE L2 3202 3293 -20 1941 111 4 0 chr11 113170792 113171054 -35612418 + AluSq SINE Alu 43 305 -8 428 364 17 11 chr11 113171241 113171417 -35612055 + MIR3 SINE MIR 21 197 -11 322 304 216 10 chr11 113171540 113171744 -35611728 - MIR SINE MIR -12 250 5 1570 200 28 46 chr11 113172228 113172623 -35610849 + MLT1B LTR MaLR 1 388 -2 678 246 17 6 chr11 113173049 113173224 -35610248 - MER69A DNA AcHobo 0 177 1 645 193 24 135 chr11 113173289 113173496 -35609976 - L2 LINE L2 0 3313 3130 21 0 0 0 chr11 113174709 113174730 -35608742 + AT_rich Low_complexity Low_complexity 1 21 0 821 238 62 16 chr11 113174892 113175117 -35608355 + MER33 DNA MER1_type 1 235 -2350 2645 93 11 0 chr11 113175117 113175492 -35607980 - L1PA13 LINE L1 -6 6157 5779 821 238 62 16 chr11 113175492 113175587 -35607885 + MER33 DNA MER1_type 235 324 0 3535 157 12 5 chr11 113175721 113176312 -35607160 - MER6A DNA MER2_type 0 605 271 689 134 155 42 chr11 113176298 113176440 -35607032 - MER6A DNA MER2_type -447 158 1 * 24 32 0 0 chr11 113176713 113176744 -35606728 + AT_rich Low_complexity Low_complexity 1 31 0 1914 203 86 24 chr11 113177005 113177472 -35606000 - MLT1D LTR MaLR -2 503 8 185 164 0 68 chr11 113177657 113177730 -35605742 + CT-rich Low_complexity Low_complexity 2 69 0 22 56 0 0 chr11 113177909 113177945 -35605527 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr11 113179452 113179482 -35603990 + AT_rich Low_complexity Low_complexity 1 30 0 219 282 43 115 chr11 113179543 113179752 -35603720 + L2 LINE L2 2291 2484 -830 181 317 17 0 chr11 113179834 113179894 -35603578 - L2 LINE L2 -8 3264 3204 289 309 84 58 chr11 113180311 113180502 -35602970 - L2 LINE L2 -1043 2271 2076 849 150 0 0 chr11 113181337 113181457 -35602015 + MER58B DNA MER1_type 222 341 0 390 324 136 28 chr11 113181464 113181788 -35601684 - L3 LINE CR1 -841 736 378 1143 114 52 0 chr11 113182506 113182716 -35600756 + L1MA8 LINE L1 6070 6290 -1 732 221 0 13 chr11 113182733 113182911 -35600561 + AluJb SINE Alu 138 313 0 986 171 5 31 chr11 113184245 113184467 -35599005 + L1MA8 LINE L1 6070 6285 -6 318 247 14 14 chr11 113184559 113184632 -35598840 + L2 LINE L2 3006 3078 -194 257 280 70 50 chr11 113184937 113185037 -35598435 + L2 LINE L2 3164 3265 -48 961 48 32 16 chr11 113185076 113185202 -35598270 + AluY SINE Alu 1 128 -183 605 153 16 8 chr11 113185304 113185428 -35598044 + AluY SINE Alu 133 257 -54 2253 89 0 3 chr11 113185493 113185795 -35597677 + AluSg SINE Alu 1 301 -9 941 178 33 54 chr11 113187960 113188201 -35595271 - MER106A DNA MER1_type 0 236 1 270 0 0 0 chr11 113188387 113188417 -35595055 + (TG)n Simple_repeat Simple_repeat 2 31 0 192 40 0 0 chr11 113188893 113188918 -35594554 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 6358 50 21 29 chr11 113189550 113190418 -35593054 + SVA Other Other 526 1386 0 293 258 140 0 chr11 113190468 113190561 -35592911 - MIR SINE MIR -85 177 72 311 325 48 16 chr11 113190754 113190880 -35592592 + MER5A DNA MER1_type 59 188 -1 183 400 27 31 chr11 113191272 113191497 -35591975 + L2 LINE L2 2868 3091 -181 182 347 40 13 chr11 113191702 113191777 -35591695 + L2 LINE L2 3186 3262 -10 182 306 102 20 chr11 113192310 113192408 -35591064 - L2 LINE L2 0 3313 3208 510 297 5 4 chr11 113192674 113192872 -35590600 + L1MA10 LINE L1 5968 6325 -5 467 315 94 43 chr11 113192872 113193317 -35590155 - MLT1J LTR MaLR -43 468 1 308 343 7 35 chr11 113193325 113193468 -35590004 - MIR SINE MIR -13 249 111 204 347 63 0 chr11 113193466 113193561 -35589911 - MER91C DNA MER1_type -24 116 16 * 357 314 41 25 chr11 113193577 113193698 -35589774 - MIR SINE MIR -139 123 1 1139 218 9 0 chr11 113193797 113194017 -35589455 - MER58A DNA MER1_type 0 224 3 254 382 63 63 chr11 113194363 113194790 -35588682 + L2 LINE L2 2846 3272 0 276 308 0 13 chr11 113195019 113195097 -35588375 + L2 LINE L2 2711 2787 -527 801 159 33 60 chr11 113195100 113195282 -35588190 + MER5B DNA MER1_type 1 177 -1 289 291 27 18 chr11 113195362 113195472 -35588000 - L2 LINE L2 -586 2728 2618 231 297 109 20 chr11 113196102 113196203 -35587269 - L2 LINE L2 0 3313 3204 331 284 0 11 chr11 113196235 113196323 -35587149 - L2 LINE L2 0 3313 3227 509 329 38 34 chr11 113197149 113197386 -35586086 - MIR SINE MIR -21 241 4 1965 156 0 0 chr11 113198406 113198707 -35584765 + AluSx SINE Alu 1 301 -11 22 56 0 0 chr11 113198806 113198842 -35584630 + AT_rich Low_complexity Low_complexity 1 36 0 1515 170 6 71 chr11 113200038 113200349 -35583123 + AluJo SINE Alu 1 291 -21 180 0 0 0 chr11 113200353 113200373 -35583099 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 28 48 0 0 chr11 113200818 113200860 -35582612 + AT_rich Low_complexity Low_complexity 1 42 0 240 274 71 0 chr11 113201833 113201917 -35581555 - L2 LINE L2 0 3272 3183 1135 309 32 11 chr11 113202809 113203181 -35580291 - LTR16C LTR ERVL 0 491 112 609 319 64 8 chr11 113203293 113203528 -35579944 + MIR SINE MIR 2 249 -13 309 304 74 40 chr11 113203543 113203691 -35579781 - L2 LINE L2 0 3313 3161 237 33 0 0 chr11 113203785 113203815 -35579657 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 26 50 0 0 chr11 113204124 113204164 -35579308 + AT_rich Low_complexity Low_complexity 1 40 0 6463 145 10 4 chr11 113204164 113205861 -35577611 - L1MA2 LINE L1 0 6304 4598 1630 134 13 23 chr11 113205961 113206268 -35577204 - L1MA2 LINE L1 -1536 4610 4307 1816 114 0 0 chr11 113206269 113206532 -35576940 - L1PA6 LINE L1 -7 6147 5885 5233 68 1 4 chr11 113206535 113207252 -35576220 + L1P LINE L1 2835 3549 -2597 27 0 0 0 chr11 113207352 113207379 -35576093 + AT_rich Low_complexity Low_complexity 1 27 0 318 319 84 0 chr11 113209295 113209414 -35574058 + MIR SINE MIR 56 184 -78 374 222 167 56 chr11 113209759 113209957 -35573515 - MER112 DNA MER1_type -40 220 1 384 249 163 57 chr11 113210021 113210230 -35573242 - L2 LINE L2 0 3313 3083 22 56 0 0 chr11 113210420 113210456 -35573016 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr11 113210727 113210749 -35572723 + AT_rich Low_complexity Low_complexity 1 22 0 285 317 96 30 chr11 113211432 113211599 -35571873 + MIR3 SINE MIR 18 195 -13 258 32 0 0 chr11 113213876 113213907 -35569565 + (TG)n Simple_repeat Simple_repeat 1 31 0 321 345 61 82 chr11 113214523 113214963 -35568509 + L3 LINE CR1 1146 1576 -1 203 208 0 19 chr11 113215733 113215786 -35567686 + (TA)n Simple_repeat Simple_repeat 1 52 0 252 0 0 0 chr11 113215787 113215815 -35567657 + (TG)n Simple_repeat Simple_repeat 2 29 0 432 220 50 14 chr11 113217025 113217166 -35566306 - MER103 DNA DNA -11 155 10 508 265 0 7 chr11 113217400 113217536 -35565936 + HsTC2 DNA Tc2 1 135 -1763 * 1022 231 58 36 chr11 113217533 113217792 -35565680 + HsTC2 DNA Tc2 1249 1501 -397 2458 108 19 11 chr11 113217792 113218153 -35565319 - THE1B LTR MaLR 0 364 1 1022 231 58 36 chr11 113218153 113218252 -35565220 + HsTC2 DNA Tc2 1501 1791 -107 2237 103 7 0 chr11 113219452 113219753 -35563719 + AluSx SINE Alu 1 303 -9 219 230 126 0 chr11 113220421 113220508 -35562964 + MIR SINE MIR 124 221 -41 965 86 0 23 chr11 113220551 113220679 -35562793 - AluSp/q SINE Alu -20 293 169 2071 276 146 22 chr11 113220840 113222012 -35561460 - L2 LINE L2 0 3313 1997 338 265 148 56 chr11 113222211 113222373 -35561099 + MER5A DNA MER1_type 7 183 -6 280 233 256 0 chr11 113223192 113223278 -35560194 - MIR SINE MIR -67 195 88 420 326 129 11 chr11 113224121 113224299 -35559173 + MIR3 SINE MIR 1 199 -9 308 309 20 7 chr11 113224503 113224655 -35558817 - L1ME4a LINE L1 -3 6118 5965 675 276 90 40 chr11 113224686 113225165 -35558307 - L1ME4a LINE L1 -224 5897 5395 778 296 93 74 chr11 113225210 113225707 -35557765 + L2 LINE L2 2804 3309 -4 23 0 0 0 chr11 113226154 113226177 -35557295 + AT_rich Low_complexity Low_complexity 1 23 0 387 275 92 0 chr11 113226472 113226603 -35556869 - MIR SINE MIR -54 208 66 198 338 211 0 chr11 113226645 113226787 -35556685 - MIR SINE MIR -16 246 75 892 220 0 0 chr11 113227231 113227408 -35556064 + L1MC1 LINE L1 6157 6333 0 399 253 82 66 chr11 113227960 113228153 -35555319 - MLT1J1 LTR MaLR -252 194 1 343 308 66 44 chr11 113228480 113228662 -35554810 + MIR SINE MIR 6 191 -71 350 345 14 22 chr11 113228693 113228832 -35554640 + MIR SINE MIR 20 157 -105 499 317 30 82 chr11 113228886 113229149 -35554323 - L2 LINE L2 -1 3312 3076 1532 169 52 60 chr11 113229149 113229517 -35553955 + MLT1A1 LTR MaLR 1 365 0 499 317 30 82 chr11 113229517 113229654 -35553818 - L2 LINE L2 -237 3076 2933 346 344 67 27 chr11 113229694 113229918 -35553554 - L2 LINE L2 -660 2654 2422 23 0 0 0 chr11 113231441 113231464 -35552008 + AT_rich Low_complexity Low_complexity 1 23 0 266 252 24 65 chr11 113232149 113232272 -35551200 + MLT1A1 LTR MaLR 77 194 -171 538 101 0 34 chr11 113232298 113232387 -35551085 - MSTC LTR MaLR -342 86 1 215 369 45 9 chr11 113233893 113234004 -35549468 + MIR SINE MIR 28 142 -120 947 126 0 6 chr11 113234367 113234541 -35548931 + (GAAA)n Simple_repeat Simple_repeat 3 175 0 651 199 0 57 chr11 113235808 113235949 -35547523 - FLAM_C SINE Alu 0 133 1 297 319 115 11 chr11 113236412 113236603 -35546869 + L2 LINE L2 2736 2946 -368 805 269 59 1 chr11 113236844 113237057 -35546415 + MIR SINE MIR 37 262 0 247 389 34 0 chr11 113237252 113237401 -35546071 + MIR3 SINE MIR 49 202 -6 314 316 50 22 chr11 113237633 113237772 -35545700 - MIR SINE MIR 0 262 120 4201 80 30 65 chr11 113237777 113238451 -35545021 + SVA Other Other 219 868 -518 839 173 0 60 chr11 113288733 113288901 -35494571 - MER39B LTR ERV1 -495 158 1 1724 288 54 8 chr11 113288950 113289558 -35493914 + MER20B DNA MER1_type 116 751 -32 195 131 48 24 chr11 113289558 113289642 -35493830 + (TA)n Simple_repeat Simple_repeat 1 86 0 318 294 117 52 chr11 113290198 113290429 -35493043 - MIR SINE MIR -6 256 11 1907 197 82 60 chr11 113290739 113291288 -35492184 - L1MC3 LINE L1 -67 7718 7158 637 325 67 80 chr11 113291546 113292008 -35491464 + HAL1 LINE L1 352 807 -1700 376 267 62 51 chr11 113292066 113292242 -35491230 + HAL1 LINE L1 970 1147 -1360 204 179 0 0 chr11 113292242 113292281 -35491191 + (TA)n Simple_repeat Simple_repeat 2 40 0 232 111 0 0 chr11 113292285 113292330 -35491142 - LTR66 LTR ERVL -171 439 395 21 309 0 0 chr11 113292489 113292544 -35490928 + GC_rich Low_complexity Low_complexity 1 55 0 274 219 32 16 chr11 113292544 113292667 -35490805 + (CGGGG)n Simple_repeat Simple_repeat 1 125 0 270 183 28 14 chr11 113292977 113293048 -35490424 + L1M4 LINE L1 2875 2946 -3200 27 73 0 0 chr11 113293048 113293103 -35490369 + AT_rich Low_complexity Low_complexity 1 55 0 2201 240 39 42 chr11 113293138 113293956 -35489516 - L1ME1 LINE L1 -9 6155 5316 1855 153 59 3 chr11 113293998 113294352 -35489120 - L1MC1 LINE L1 0 6333 5960 3668 165 14 15 chr11 113294370 113295102 -35488370 - L1MA7 LINE L1 -6 6285 5555 822 243 27 23 chr11 113295121 113295384 -35488088 - L1ME1 LINE L1 -1411 4735 4472 616 282 56 0 chr11 113295391 113295607 -35487865 - L1ME1 LINE L1 -1955 4191 3964 256 367 20 10 chr11 113296503 113296601 -35486871 + MIR SINE MIR 47 145 -117 272 230 74 22 chr11 113296927 113297062 -35486410 - L1ME4a LINE L1 -24 6097 5956 2843 161 38 35 chr11 113297459 113298068 -35485404 - LTR36 LTR ERV1 0 611 1 227 240 0 0 chr11 113298793 113298843 -35484629 - MIR3 SINE MIR -11 197 148 4288 120 5 2 chr11 113298863 113299496 -35483976 - MER41B LTR ERV1 0 635 1 327 303 10 0 chr11 113300675 113300774 -35482698 + MIR SINE MIR 146 245 -17 188 261 283 0 chr11 113301492 113301584 -35481888 - L2 LINE L2 -16 3297 3180 284 347 0 0 chr11 113301874 113301946 -35481526 + MLT1K LTR MaLR 70 141 -447 250 173 0 19 chr11 113301963 113302015 -35481457 - MLT1A1 LTR MaLR -311 54 4 211 228 18 0 chr11 113302834 113302891 -35480581 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 21 36 0 0 chr11 113303593 113303621 -35479851 + AT_rich Low_complexity Low_complexity 1 28 0 297 0 0 0 chr11 113304359 113304392 -35479080 + (A)n Simple_repeat Simple_repeat 1 33 0 510 46 0 0 chr11 113304392 113304457 -35479015 + (T)n Simple_repeat Simple_repeat 1 65 0 195 100 0 0 chr11 113305261 113305291 -35478181 + (A)n Simple_repeat Simple_repeat 1 30 0 551 135 11 0 chr11 113305782 113305871 -35477601 - LTR12 LTR ERV1 0 714 625 329 171 45 72 chr11 113305871 113305982 -35477490 - LTR30 LTR ERV1 -92 612 375 532 191 176 45 chr11 113305982 113306181 -35477291 - LTR12 LTR ERV1 -437 277 53 249 235 0 0 chr11 113306182 113306233 -35477239 - LTR30 LTR ERV1 -671 51 1 315 239 137 10 chr11 113306305 113306429 -35477043 + MIR SINE MIR 4 142 -66 231 36 0 0 chr11 113306430 113306458 -35477014 + (TG)n Simple_repeat Simple_repeat 1 28 0 24 32 0 0 chr11 113306458 113306489 -35476983 + AT_rich Low_complexity Low_complexity 1 31 0 738 271 67 59 chr11 113306743 113307397 -35476075 + L1MEd LINE L1 1033 1620 -4910 495 324 63 67 chr11 113307501 113308099 -35475373 + L1MEd LINE L1 1809 2462 -4259 217 156 16 78 chr11 113308146 113308210 -35475262 + (TATATG)n Simple_repeat Simple_repeat 3 62 0 239 133 22 0 chr11 113308225 113308270 -35475202 + (CATA)n Simple_repeat Simple_repeat 3 48 0 312 239 86 17 chr11 113308773 113308890 -35474582 + L1MEd LINE L1 3099 3223 -3317 356 176 8 160 chr11 113308906 113309031 -35474441 + MER21B LTR ERV1 1 106 -757 286 256 0 26 chr11 113309028 113309106 -35474366 + MER77 LTR ERV1 61 136 -469 * 2419 241 94 20 chr11 113309117 113309806 -35473666 + MER21B LTR ERV1 123 862 -1 321 301 11 17 chr11 113309810 113309986 -35473486 + L1MEd LINE L1 3236 3410 -3130 1206 182 93 4 chr11 113310050 113310308 -35473164 - L1MB5 LINE L1 -8 6166 5886 21 0 0 0 chr11 113310308 113310329 -35473143 + AT_rich Low_complexity Low_complexity 1 21 0 352 346 24 19 chr11 113310638 113310846 -35472626 + L1ME LINE L1 5534 5742 -428 1684 248 50 55 chr11 113311010 113311668 -35471804 - L1M4 LINE L1 -2135 4011 3357 987 232 90 7 chr11 113311671 113312031 -35471441 - L1 LINE L1 -840 5306 4906 612 356 43 40 chr11 113312423 113312819 -35470653 - L1MEc LINE L1 -5963 433 37 303 275 55 16 chr11 113314039 113314189 -35469283 + MIR SINE MIR 1 156 -57 25 31 0 0 chr11 113314273 113314305 -35469167 + AT_rich Low_complexity Low_complexity 1 32 0 200 213 0 21 chr11 113314376 113314423 -35469049 + GA-rich Low_complexity Low_complexity 3 48 0 319 386 59 47 chr11 113314564 113315266 -35468206 - L2 LINE L2 -4 3268 2562 450 301 86 18 chr11 113315499 113315662 -35467810 + MER5B DNA MER1_type 2 175 -3 199 169 17 34 chr11 113315691 113315750 -35467722 + L2 LINE L2 3175 3232 -81 1798 209 79 46 chr11 113317201 113317778 -35465694 - MLT1E1 LTR MaLR -5 649 5 24 0 0 0 chr11 113317835 113317859 -35465613 + AT_rich Low_complexity Low_complexity 1 24 0 32 43 0 0 chr11 113317910 113317956 -35465516 + AT_rich Low_complexity Low_complexity 1 46 0 488 33 0 0 chr11 113318027 113318088 -35465384 - L1PA6 LINE L1 -5 6149 6089 835 317 103 24 chr11 113318825 113319399 -35464073 - MLT1G LTR MaLR 0 590 1 234 337 10 31 chr11 113319663 113319761 -35463711 - L2 LINE L2 -992 2322 2227 394 312 129 0 chr11 113320110 113320280 -35463192 + MIR SINE MIR 58 249 -13 763 214 117 24 chr11 113321355 113321696 -35461776 - MER69 DNA AcHobo -112 2414 2042 1238 302 67 7 chr11 113321699 113322129 -35461343 - MER69 DNA AcHobo -2070 456 1 286 309 0 0 chr11 113322709 113322793 -35460679 - MER117 DNA MER1_type -31 166 83 1020 84 0 22 chr11 113323184 113323362 -35460110 + (TCTA)n Simple_repeat Simple_repeat 4 177 0 1325 208 19 15 chr11 113323374 113323565 -35459907 + MER82 DNA MER2_type 11 205 -448 201 74 0 0 chr11 113323565 113323592 -35459880 + (TA)n Simple_repeat Simple_repeat 2 28 0 1325 208 19 15 chr11 113323592 113323665 -35459807 + MER82 DNA MER2_type 205 276 -377 180 0 0 0 chr11 113323667 113323687 -35459785 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 1921 118 17 14 chr11 113323690 113323978 -35459494 - AluSx SINE Alu -23 289 1 1960 136 4 0 chr11 113323989 113324290 -35459182 - AluSx SINE Alu 0 302 1 217 304 38 25 chr11 113324465 113324544 -35458928 - MIR SINE MIR -26 236 157 218 359 94 23 chr11 113325828 113325956 -35457516 + MIR3 SINE MIR 13 149 -59 242 321 64 18 chr11 113326100 113326209 -35457263 - MIR SINE MIR -60 202 89 4573 65 8 0 chr11 113326239 113326834 -35456638 - L1PA7 LINE L1 -4 6150 5551 409 238 0 0 chr11 113327143 113327244 -35456228 - L1MA4 LINE L1 -3 6297 6197 1815 209 20 85 chr11 113327446 113327986 -35455486 - MLT1D LTR MaLR 0 505 1 1787 182 55 0 chr11 113327989 113328319 -35455153 + MER7A DNA MER2_type 1 346 0 23 0 0 0 chr11 113328890 113328913 -35454559 + AT_rich Low_complexity Low_complexity 1 23 0 1937 117 0 0 chr11 113329456 113329722 -35453750 + AluSq SINE Alu 39 304 -9 228 100 0 0 chr11 113329942 113329982 -35453490 + (TTAG)n Simple_repeat Simple_repeat 1 40 0 2072 94 7 0 chr11 113329982 113330259 -35453213 - AluSx SINE Alu -33 279 1 561 313 20 10 chr11 113330409 113330610 -35452862 + MIR SINE MIR 8 210 -52 229 330 11 11 chr11 113330826 113330914 -35452558 + L2 LINE L2 2799 2886 -428 248 275 14 14 chr11 113332213 113332282 -35451190 + CT-rich Low_complexity Low_complexity 6 74 0 21 0 0 0 chr11 113333222 113333243 -35450229 + AT_rich Low_complexity Low_complexity 1 21 0 190 269 172 21 chr11 113333288 113333381 -35450091 + MIR SINE MIR 45 151 -111 257 159 0 43 chr11 113334210 113334279 -35449193 + CT-rich Low_complexity Low_complexity 3 68 0 1049 248 124 31 chr11 113335166 113335586 -35447886 + MLT1C LTR MaLR 9 467 0 244 203 40 0 chr11 113335759 113335833 -35447639 + L1M4 LINE L1 4339 4415 -1731 2125 241 41 61 chr11 113335901 113336117 -35447355 + L1ME LINE L1 2151 2370 -3776 3429 87 11 0 chr11 113336117 113336565 -35446907 + MLT2A2 LTR ERVL 1 453 0 2125 241 41 61 chr11 113336565 113336933 -35446539 + L1ME LINE L1 2370 2715 -3431 2751 10 0 7 chr11 113336933 113337243 -35446229 + AluYa5 SINE Alu 1 308 -3 2125 241 41 61 chr11 113337243 113337530 -35445942 + L1ME LINE L1 2715 3006 -3140 2474 254 67 28 chr11 113337685 113339058 -35444414 + L1ME LINE L1 4408 5818 -348 2802 260 54 14 chr11 113339111 113340042 -35443430 + L1MC4a LINE L1 6829 7796 -12 3006 117 29 8 chr11 113340488 113340975 -35442497 + L1PA14 LINE L1 5664 6160 -1 1925 125 3 29 chr11 113342982 113343295 -35440177 - AluSx SINE Alu -7 305 1 768 249 15 34 chr11 113344356 113344561 -35438911 + MIR SINE MIR 58 258 -4 1773 257 38 63 chr11 113344570 113345183 -35438289 - MLT1E2 LTR MaLR 0 626 1 23 0 0 0 chr11 113345854 113345877 -35437595 + AT_rich Low_complexity Low_complexity 1 23 0 333 333 207 5 chr11 113345893 113346091 -35437381 - MIR SINE MIR -24 238 1 436 253 22 131 chr11 113347089 113347318 -35436154 - L2 LINE L2 -6 3307 3104 785 285 64 0 chr11 113347367 113347602 -35435870 + MIR SINE MIR 13 262 0 304 290 101 34 chr11 113347624 113347876 -35435596 - L2 LINE L2 -284 3029 2757 194 214 0 0 chr11 113348058 113348100 -35435372 - L2 LINE L2 -77 3236 3195 21 0 0 0 chr11 113348100 113348121 -35435351 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr11 113348372 113348394 -35435078 + AT_rich Low_complexity Low_complexity 1 22 0 38 39 0 0 chr11 113348793 113348845 -35434627 + AT_rich Low_complexity Low_complexity 1 52 0 24 0 0 0 chr11 113349262 113349286 -35434186 + AT_rich Low_complexity Low_complexity 1 24 0 276 77 0 0 chr11 113349949 113349988 -35433484 + (TC)n Simple_repeat Simple_repeat 1 39 0 21 0 0 0 chr11 113350710 113350731 -35432741 + AT_rich Low_complexity Low_complexity 1 21 0 488 214 43 17 chr11 113351759 113351876 -35431596 - L2 LINE L2 -10 3303 3184 574 215 109 25 chr11 113351877 113352024 -35431448 + MLT1F1 LTR MaLR 2 161 -394 5987 106 14 0 chr11 113352024 113353197 -35430275 + L1PA14 LINE L1 4975 6160 -1 574 215 109 25 chr11 113353197 113353217 -35430255 + MLT1F1 LTR MaLR 161 178 -377 976 217 240 3 chr11 113353343 113353647 -35429825 + MLT1F1 LTR MaLR 184 559 -8 1912 304 227 30 chr11 113353712 113355648 -35427824 - L2 LINE L2 -178 3135 832 227 224 52 0 chr11 113357680 113357738 -35425734 - MIR SINE MIR -18 244 184 264 359 66 0 chr11 113357750 113357856 -35425616 + L2 LINE L2 3151 3263 -9 240 35 0 0 chr11 113358572 113358601 -35424871 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 614 122 0 0 chr11 113358862 113358992 -35424480 - Alu SINE Alu 0 320 191 369 167 30 0 chr11 113360141 113360207 -35423265 - AluJo SINE Alu -3 299 232 1165 162 0 31 chr11 113360208 113360399 -35423073 - AluJo SINE Alu -127 185 1 2215 107 3 0 chr11 113360807 113361097 -35422375 + AluSx SINE Alu 1 291 -21 484 305 17 11 chr11 113361160 113361334 -35422138 + MER69 DNA AcHobo 176 350 -876 687 286 44 26 chr11 113361342 113361376 -35422096 + L1MEc LINE L1 36 68 -6328 1769 128 71 49 chr11 113361376 113361743 -35421729 - THE1C LTR MaLR 0 375 1 687 286 44 26 chr11 113361743 113361981 -35421491 + L1MEc LINE L1 68 313 -6083 1713 245 81 46 chr11 113361992 113362621 -35420851 + L1MEc LINE L1 358 1008 -5388 300 279 122 20 chr11 113362639 113362836 -35420636 + L1MEc LINE L1 1113 1329 -5067 375 261 36 9 chr11 113363011 113363122 -35420350 + MER69 DNA AcHobo 487 600 -1926 802 219 37 49 chr11 113363144 113363390 -35420082 + L1MEc LINE L1 1571 1813 -4583 990 319 58 9 chr11 113363428 113363861 -35419611 + MER69 DNA AcHobo 413 866 -1660 732 254 31 5 chr11 113364012 113364205 -35419267 + MER69 DNA AcHobo 873 1070 -1456 951 192 158 26 chr11 113364242 113364591 -35418881 + MER69 DNA AcHobo 2124 2518 -8 2212 110 0 28 chr11 113366153 113366471 -35417001 + AluY SINE Alu 1 309 -2 4493 82 89 124 chr11 113366640 113367496 -35415976 + LTR12 LTR ERV1 1 826 0 249 287 11 58 chr11 113369237 113369324 -35414148 + L2 LINE L2 3186 3268 -4 1775 190 0 0 chr11 113372364 113372653 -35410819 - AluJo SINE Alu -23 289 1 24 0 0 0 chr11 113373185 113373209 -35410263 + AT_rich Low_complexity Low_complexity 1 24 0 217 282 68 29 chr11 113373463 113373566 -35409906 + L2 LINE L2 2648 2754 -560 365 261 134 8 chr11 113373728 113373847 -35409625 + L2 LINE L2 3139 3272 0 413 269 0 10 chr11 113374527 113374631 -35408841 - MER5A DNA MER1_type -83 106 4 1640 196 19 56 chr11 113374765 113375142 -35408330 + MLT1A1 LTR MaLR 3 365 0 2263 122 27 8 chr11 113375171 113375539 -35407933 + THE1C LTR MaLR 1 375 0 310 324 126 22 chr11 113376255 113376437 -35407035 + MIR3 SINE MIR 4 204 -4 1080 281 58 73 chr11 113377133 113377707 -35405765 - L2 LINE L2 -2590 724 160 195 353 90 0 chr11 113377714 113377847 -35405625 - L2 LINE L2 -1433 1881 1737 416 270 24 24 chr11 113378055 113378181 -35405291 - MIR SINE MIR -39 223 98 247 339 73 17 chr11 113378443 113378676 -35404796 + MARNA DNA Mariner 328 573 -13 21 36 0 0 chr11 113379375 113379403 -35404069 + AT_rich Low_complexity Low_complexity 1 28 0 1872 164 49 0 chr11 113379414 113379743 -35403729 + MER7A DNA MER2_type 4 346 0 1343 202 4 37 chr11 113380444 113380716 -35402756 + AluJo SINE Alu 1 263 -49 400 263 80 51 chr11 113380727 113380964 -35402508 - L1M4b LINE L1 -3926 3031 2789 317 253 95 119 chr11 113381036 113381289 -35402183 - L1M4b LINE L1 -4419 2719 2473 289 105 0 0 chr11 113381426 113381464 -35402008 + tRNA-Arg-AGA tRNA tRNA 1 38 -38 2362 235 32 76 chr11 113381631 113382475 -35400997 - L1M4b LINE L1 -4543 2416 1635 1948 111 44 0 chr11 113382475 113382745 -35400727 - AluSx SINE Alu -30 282 1 2362 235 32 76 chr11 113382745 113383147 -35400325 - L1M4b LINE L1 -5324 1635 1217 309 26 0 0 chr11 113383241 113383279 -35400193 + (TG)n Simple_repeat Simple_repeat 2 39 0 1069 277 45 27 chr11 113383536 113383939 -35399533 - L1M4b LINE L1 -5635 1224 590 351 263 142 24 chr11 113384476 113384661 -35398811 + MIR SINE MIR 3 208 -54 336 377 25 0 chr11 113385224 113385346 -35398126 + L2 LINE L2 3148 3272 0 476 238 19 6 chr11 113385489 113385623 -35397849 + L1PA8A LINE L1 5685 5816 -315 26 0 0 0 chr11 113385698 113385724 -35397748 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr11 113386552 113386574 -35396898 + AT_rich Low_complexity Low_complexity 1 22 0 570 310 25 58 chr11 113386726 113386968 -35396504 + MIR SINE MIR 9 242 -20 2184 319 50 64 chr11 113387310 113388277 -35395195 + L1MD1 LINE L1 5279 6231 -11 268 254 38 55 chr11 113388278 113388531 -35394941 + L1MEc LINE L1 2133 2350 -3865 669 311 73 21 chr11 113388544 113389225 -35394247 - L1MEc LINE L1 -4654 2468 1752 186 71 0 0 chr11 113389227 113389255 -35394217 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1584 300 71 14 chr11 113389255 113389878 -35393594 - L1MEc LINE L1 -4895 1528 871 23 0 0 0 chr11 113389906 113389929 -35393543 + AT_rich Low_complexity Low_complexity 1 23 0 972 202 88 4 chr11 113390276 113390538 -35392934 - L1MEc LINE L1 -6120 303 20 186 43 0 0 chr11 113391089 113391112 -35392360 + (CAAAAA)n Simple_repeat Simple_repeat 4 26 0 223 330 55 0 chr11 113391126 113391217 -35392255 + MIR SINE MIR 67 162 -100 356 326 158 5 chr11 113392001 113392197 -35391275 + MIR SINE MIR 25 250 -12 4393 136 59 49 chr11 113393190 113394007 -35389465 - LTR12 LTR ERV1 -1 825 1 502 241 35 44 chr11 113394041 113394357 -35389115 - pTR5 LTR ERV1 -1383 1055 743 212 213 64 0 chr11 113394817 113394864 -35388608 - L2 LINE L2 -4 3268 3219 246 298 93 40 chr11 113395781 113395932 -35387540 + MIR3 SINE MIR 26 184 -24 1689 206 3 24 chr11 113396468 113396837 -35386635 + MLT1A1 LTR MaLR 1 361 -4 2999 209 37 5 chr11 113397188 113397787 -35385685 + MER82 DNA MER2_type 36 653 0 621 0 0 0 chr11 113397965 113398034 -35385438 + (TATATG)n Simple_repeat Simple_repeat 2 70 0 1657 178 45 53 chr11 113398043 113398419 -35385053 + THE1C LTR MaLR 2 374 -1 289 253 0 33 chr11 113398554 113398645 -35384827 - L1MC/D LINE L1 -2043 5765 5678 1761 164 11 4 chr11 113399756 113400037 -35383435 + AluSx SINE Alu 1 283 -29 195 42 0 0 chr11 113400037 113400061 -35383411 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 355 318 110 80 chr11 113400163 113400623 -35382849 + HAL1b LINE L1 38 518 -830 1655 179 7 14 chr11 113400623 113400913 -35382559 - AluJb SINE Alu -21 291 4 355 318 110 80 chr11 113400913 113400999 -35382473 + HAL1b LINE L1 518 600 -748 671 254 0 0 chr11 113401150 113401288 -35382184 - MER63A DNA MER1_type -29 181 44 1138 175 72 110 chr11 113401324 113401735 -35381737 - MLT1B LTR MaLR 0 396 1 424 227 23 64 chr11 113401746 113401888 -35381584 + L1MC5 LINE L1 6656 6814 -971 666 143 29 21 chr11 113401952 113402092 -35381380 + L1MC5 LINE L1 7307 7447 -514 284 315 65 9 chr11 113403935 113404043 -35379429 - MIR3 SINE MIR -30 178 65 237 65 0 0 chr11 113404044 113404075 -35379397 + (A)n Simple_repeat Simple_repeat 1 31 0 23 54 0 0 chr11 113404120 113404157 -35379315 + AT_rich Low_complexity Low_complexity 1 37 0 221 291 55 55 chr11 113404461 113404571 -35378901 + MIR SINE MIR 79 188 -74 2438 70 7 0 chr11 113404917 113405219 -35378253 - AluY SINE Alu -7 304 1 248 340 80 0 chr11 113407292 113407392 -35376080 + HAL1 LINE L1 11 118 -2389 487 229 8 0 chr11 113407411 113407533 -35375939 - L1MC3 LINE L1 -2 7783 7661 1292 263 74 28 chr11 113407634 113408133 -35375339 + HAL1 LINE L1 1189 1710 -797 30 0 0 0 chr11 113409288 113409318 -35374154 + AT_rich Low_complexity Low_complexity 1 30 0 775 211 278 4 chr11 113409327 113409597 -35373875 - MER2 DNA MER2_type 0 344 1 968 265 21 13 chr11 113410932 113411166 -35372306 + MIR SINE MIR 6 241 -21 1001 249 78 46 chr11 113411192 113411597 -35371875 - HAL1b LINE L1 -8 1340 915 2416 59 3 0 chr11 113411597 113411903 -35371569 - AluY SINE Alu -4 307 1 1001 249 78 46 chr11 113411903 113411994 -35371478 - HAL1b LINE L1 -433 915 828 31 0 0 0 chr11 113412463 113412494 -35370978 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr11 113413250 113413285 -35370187 + AT_rich Low_complexity Low_complexity 1 35 0 207 309 103 15 chr11 113413736 113413804 -35369668 + MIR SINE MIR 38 111 -151 701 336 43 0 chr11 113414179 113414414 -35369058 + MIR SINE MIR 8 252 -10 913 308 12 4 chr11 113414705 113414955 -35368517 + MIR SINE MIR 9 260 -2 553 192 17 17 chr11 113415731 113415908 -35367564 + CT-rich Low_complexity Low_complexity 1 177 0 266 293 61 37 chr11 113415992 113416074 -35367398 + L2 LINE L2 3230 3313 0 230 363 44 16 chr11 113416106 113416288 -35367184 - MIR SINE MIR -5 257 71 186 103 0 0 chr11 113416449 113416478 -35366994 + (TG)n Simple_repeat Simple_repeat 2 30 0 199 238 10 109 chr11 113417679 113417780 -35365692 + L2 LINE L2 3176 3266 -6 1965 164 33 3 chr11 113418451 113418816 -35364656 + MSTA LTR MaLR 1 376 -52 1154 142 0 11 chr11 113419343 113419526 -35363946 + AluY SINE Alu 131 311 0 2172 72 0 24 chr11 113419717 113420046 -35363426 - AluY SINE Alu 0 322 1 652 307 53 9 chr11 113422741 113422969 -35360503 - MIR SINE MIR -4 258 21 21 0 0 0 chr11 113423220 113423241 -35360231 + AT_rich Low_complexity Low_complexity 1 21 0 2396 200 29 70 chr11 113423811 113423939 -35359533 - MER39 LTR ERV1 -1 706 574 4940 73 158 0 chr11 113423939 113424652 -35358820 - LTR12 LTR ERV1 0 826 1 2396 200 29 70 chr11 113424652 113424707 -35358765 - MER39 LTR ERV1 -133 574 518 3100 151 34 9 chr11 113424707 113425269 -35358203 + LTR24B LTR ERV1 1 576 0 2396 200 29 70 chr11 113425269 113425560 -35357912 - MER39 LTR ERV1 -189 518 263 2232 91 3 10 chr11 113425560 113425869 -35357603 + AluSq SINE Alu 1 307 -6 2396 200 29 70 chr11 113425869 113426051 -35357421 - MER39 LTR ERV1 -444 263 75 262 328 39 4 chr11 113426130 113426362 -35357110 + MER20B DNA MER1_type 115 354 -429 14238 144 17 26 chr11 113426491 113426677 -35356795 - Tigger1 DNA MER2_type -1 2417 2231 1182 204 25 13 chr11 113426677 113426912 -35356560 - MER8 DNA MER2_type 0 239 2 14238 144 17 26 chr11 113426912 113429162 -35354310 - Tigger1 DNA MER2_type -187 2231 2 1548 152 0 57 chr11 113429320 113429616 -35353856 - AluJb SINE Alu -25 287 9 259 300 78 17 chr11 113429873 113430053 -35353419 - Charlie7 DNA MER1_type -2398 214 24 308 356 0 20 chr11 113430217 113430318 -35353154 - L2 LINE L2 -72 3200 3102 274 212 25 102 chr11 113430311 113430429 -35353043 - MIR SINE MIR -34 228 120 * 1204 208 4 34 chr11 113431815 113432079 -35351393 - AluJb SINE Alu -26 286 31 6602 120 123 114 chr11 113432082 113433764 -35349708 - pTR5 LTR ERV1 0 2438 743 189 337 33 22 chr11 113433829 113433921 -35349551 - MIR SINE MIR -68 140 48 1801 225 0 8 chr11 113434635 113435000 -35348472 + MLT1A1 LTR MaLR 1 362 -3 22 35 0 0 chr11 113435163 113435192 -35348280 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr11 113435617 113435640 -35347832 + AT_rich Low_complexity Low_complexity 1 23 0 357 164 0 0 chr11 113435692 113435765 -35347707 + (TG)n Simple_repeat Simple_repeat 2 74 0 263 278 185 0 chr11 113435979 113436087 -35347385 - LTR50 LTR ERVL -636 159 32 200 323 32 0 chr11 113436923 113436985 -35346487 - MIR SINE MIR -113 149 86 517 256 24 0 chr11 113437114 113437239 -35346233 - MER94 DNA DNA -6 128 1 414 355 114 32 chr11 113437239 113437580 -35345892 + L3 LINE CR1 1013 1381 -196 417 276 4 114 chr11 113437612 113437772 -35345700 - L1M4 LINE L1 -1886 4260 4137 625 204 0 0 chr11 113437772 113437885 -35345587 + FLAM_A SINE Alu 4 116 -17 417 276 4 114 chr11 113437885 113437978 -35345494 - L1M4 LINE L1 -2009 4137 4035 355 285 82 97 chr11 113438106 113439039 -35344433 - L1M4 LINE L1 -2331 3815 2869 300 53 0 0 chr11 113439039 113439077 -35344395 + (TG)n Simple_repeat Simple_repeat 1 38 0 2395 81 0 0 chr11 113439080 113439387 -35344085 - AluSc SINE Alu -2 307 1 355 285 82 97 chr11 113439387 113439447 -35344025 - L1M4 LINE L1 -3279 2867 2813 27 73 0 0 chr11 113439448 113439503 -35343969 + AT_rich Low_complexity Low_complexity 1 55 0 445 227 35 21 chr11 113440032 113440173 -35343299 - L1ME2 LINE L1 -4 6160 6018 4414 130 51 13 chr11 113440457 113440815 -35342657 - L1PB1 LINE L1 -5 6146 5803 597 91 0 27 chr11 113440815 113440925 -35342547 + (TA)n Simple_repeat Simple_repeat 1 107 0 4414 130 51 13 chr11 113440925 113441329 -35342143 - L1PB1 LINE L1 -348 5803 5355 1958 254 44 34 chr11 113441329 113442141 -35341331 - L1ME2 LINE L1 -196 5970 5147 303 122 0 0 chr11 113442856 113442905 -35340567 + (TG)n Simple_repeat Simple_repeat 1 49 0 1229 190 44 58 chr11 113443312 113443607 -35339865 + AluJo SINE Alu 14 304 -8 285 162 29 29 chr11 113443882 113443950 -35339522 + MER5B DNA MER1_type 1 68 -110 488 261 23 0 chr11 113446248 113446378 -35337094 + MIR SINE MIR 130 262 0 4715 24 0 0 chr11 113448025 113448576 -35334896 - L1PA3 LINE L1 0 6155 5605 3042 7 0 0 chr11 113448576 113448980 -35334492 + L1PA3 LINE L1 5197 5600 -555 1487 317 191 38 chr11 113449001 113450260 -35333212 + L2 LINE L2 1279 2730 -584 21 36 0 0 chr11 113451009 113451037 -35332435 + AT_rich Low_complexity Low_complexity 1 28 0 408 104 0 65 chr11 113451037 113451114 -35332358 - L1PA3 LINE L1 0 6155 6084 802 92 0 61 chr11 113451176 113451307 -35332165 - L1PA7 LINE L1 -873 5273 5151 6720 65 6 0 chr11 113451307 113452178 -35331294 + L1PA7 LINE L1 5265 6146 -8 209 354 39 39 chr11 113452195 113452322 -35331150 - L2 LINE L2 -8 3264 3138 678 172 0 0 chr11 113452423 113452539 -35330933 + FLAM_C SINE Alu 2 117 -16 222 37 0 0 chr11 113452540 113452567 -35330905 + (TG)n Simple_repeat Simple_repeat 2 28 0 342 272 0 22 chr11 113452567 113452659 -35330813 - L1MC4 LINE L1 -1339 6703 6614 913 189 6 0 chr11 113452669 113452833 -35330639 + AluJb SINE Alu 138 302 -10 21 36 0 0 chr11 113453982 113454010 -35329462 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 113455205 113455226 -35328246 + AT_rich Low_complexity Low_complexity 1 21 0 329 304 48 24 chr11 113455713 113455881 -35327591 + L2 LINE L2 3011 3182 -131 183 129 0 0 chr11 113456059 113456090 -35327382 + (GAAAA)n Simple_repeat Simple_repeat 3 33 0 376 345 148 28 chr11 113456397 113456754 -35326718 + L1MC/D LINE L1 5266 5665 -2143 3866 86 13 0 chr11 113457398 113457931 -35325541 - L1PA11 LINE L1 0 6174 5635 4510 152 31 10 chr11 113457931 113458708 -35324764 + L1P4 LINE L1 4511 5311 -863 216 0 0 0 chr11 113458708 113458732 -35324740 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 4510 152 31 10 chr11 113458732 113459048 -35324424 + L1P4 LINE L1 5311 5619 -555 27 81 0 0 chr11 113459084 113459146 -35324326 + AT_rich Low_complexity Low_complexity 1 62 0 542 294 14 28 chr11 113459402 113459613 -35323859 - LTR16B LTR ERVL -17 447 240 230 361 132 27 chr11 113461647 113461866 -35321606 - MIR SINE MIR -16 246 5 249 203 81 142 chr11 113462771 113462863 -35320609 + MIR SINE MIR 15 96 -166 2294 116 3 0 chr11 113462863 113463174 -35320298 - AluSx SINE Alu 0 312 1 249 203 81 142 chr11 113463174 113463229 -35320243 + MIR SINE MIR 96 153 -109 2080 150 45 68 chr11 113465115 113465555 -35317917 - MSTB1 LTR MaLR -2 430 1 214 272 49 12 chr11 113465645 113465726 -35317746 - MIR SINE MIR -95 167 84 6296 71 21 2 chr11 113466683 113467635 -35315837 + L1PA8A LINE L1 5160 6127 -4 307 351 61 8 chr11 113467775 113467906 -35315566 - MER91C DNA MER1_type -2 138 1 1507 178 18 11 chr11 113468333 113468608 -35314864 + Tigger4(Zombi) DNA MER2_type 1 277 -2454 4561 147 10 14 chr11 113468660 113469438 -35314034 + Tigger4(Zombi) DNA MER2_type 1895 2669 -62 22 35 0 0 chr11 113469682 113469711 -35313761 + GC_rich Low_complexity Low_complexity 1 29 0 3911 176 98 47 chr11 113470019 113471052 -35312420 - pTR5 LTR ERV1 -610 1828 743 5515 154 14 6 chr11 113471052 113471984 -35311488 + Tigger1 DNA MER2_type 236 1174 -1244 25 0 0 0 chr11 113472668 113472693 -35310779 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr11 113473634 113473656 -35309816 + AT_rich Low_complexity Low_complexity 1 22 0 1158 296 37 35 chr11 113474687 113475116 -35308356 - MLT1J1 LTR MaLR -8 438 9 25 31 0 0 chr11 113476009 113476041 -35307431 + AT_rich Low_complexity Low_complexity 1 32 0 233 255 0 11 chr11 113476276 113476370 -35307102 + (TATATG)n Simple_repeat Simple_repeat 3 95 0 275 130 19 0 chr11 113476659 113476713 -35306759 + (TG)n Simple_repeat Simple_repeat 2 56 0 371 184 23 17 chr11 113476774 113476948 -35306524 + (TA)n Simple_repeat Simple_repeat 1 175 0 221 188 30 23 chr11 113476959 113477092 -35306380 + (TA)n Simple_repeat Simple_repeat 2 135 0 337 158 0 18 chr11 113477472 113477529 -35305943 + MER3 DNA MER1_type 35 90 -119 687 175 12 70 chr11 113477553 113477674 -35305798 - L1MB1 LINE L1 -21 6168 6058 2432 56 0 7 chr11 113477674 113477976 -35305496 - AluY SINE Alu -11 300 1 687 175 12 70 chr11 113477976 113478025 -35305447 - L1MB1 LINE L1 -131 6058 6008 787 222 0 6 chr11 113478028 113478195 -35305277 - MER3 DNA MER1_type -28 181 16 201 74 0 0 chr11 113478314 113478341 -35305131 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1557 181 18 14 chr11 113478351 113478632 -35304840 - AluJo SINE Alu -30 282 1 323 233 164 9 chr11 113478870 113478986 -35304486 - L2 LINE L2 0 3313 3180 213 108 0 0 chr11 113478999 113479036 -35304436 + (TA)n Simple_repeat Simple_repeat 1 37 0 332 102 0 17 chr11 113479590 113479649 -35303823 + (TA)n Simple_repeat Simple_repeat 2 59 0 1805 172 23 12 chr11 113480390 113480733 -35302739 + MER47A DNA MER2_type 20 366 0 21 0 0 0 chr11 113481951 113481972 -35301500 + AT_rich Low_complexity Low_complexity 1 21 0 801 313 58 33 chr11 113482124 113482523 -35300949 - MLT1I LTR MaLR 0 409 1 344 228 12 12 chr11 113482537 113482707 -35300765 + GA-rich Low_complexity Low_complexity 1 170 0 1364 179 46 25 chr11 113482847 113483132 -35300340 - AluJb SINE Alu -16 296 6 27 0 0 0 chr11 113483279 113483306 -35300166 + AT_rich Low_complexity Low_complexity 1 27 0 306 270 77 89 chr11 113483313 113483613 -35299859 + MLT1H LTR MaLR 1 323 -107 783 132 8 0 chr11 113484195 113484316 -35299156 + L1PA11 LINE L1 6042 6163 -11 235 313 24 36 chr11 113484328 113484411 -35299061 + MIR SINE MIR 5 86 -176 2471 101 17 6 chr11 113484414 113484771 -35298701 - THE1B LTR MaLR 0 364 4 4275 150 45 43 chr11 113485293 113486179 -35297293 + L1PA16 LINE L1 5276 6163 -3 240 346 39 39 chr11 113487407 113487511 -35295961 + L2 LINE L2 3210 3313 0 796 44 18 0 chr11 113489672 113489785 -35293687 + (TCTA)n Simple_repeat Simple_repeat 2 116 0 21 36 0 0 chr11 113490001 113490029 -35293443 + AT_rich Low_complexity Low_complexity 1 28 0 191 324 132 15 chr11 113490541 113490677 -35292795 + L2 LINE L2 3138 3289 -24 1897 143 60 17 chr11 113490794 113491145 -35292327 - MER47A DNA MER2_type 0 366 1 498 276 103 6 chr11 113492019 113492193 -35291279 - MIR SINE MIR -70 192 2 191 188 21 0 chr11 113492238 113492286 -35291186 + CT-rich Low_complexity Low_complexity 4 52 0 1211 212 25 16 chr11 113493348 113493669 -35289803 + MER33 DNA MER1_type 1 324 0 23 0 0 0 chr11 113494020 113494043 -35289429 + AT_rich Low_complexity Low_complexity 1 23 0 1129 114 43 52 chr11 113494074 113494285 -35289187 + L1PB2 LINE L1 5939 6147 -4 398 319 35 24 chr11 113494415 113494584 -35288888 - MLT1L LTR MaLR -296 319 149 351 278 0 10 chr11 113495290 113495387 -35288085 - MIR3 SINE MIR -2 206 111 1011 311 112 64 chr11 113495613 113496349 -35287123 - L2 LINE L2 -254 3018 2247 220 320 246 12 chr11 113496350 113496675 -35286797 - L2 LINE L2 -1180 2134 1734 192 333 53 0 chr11 113496863 113496938 -35286534 - L2 LINE L2 -1 3312 3234 329 237 17 52 chr11 113497333 113497506 -35285966 + G-rich Low_complexity Low_complexity 2 168 0 1243 148 19 64 chr11 113498191 113498455 -35285017 - L1MC1 LINE L1 -763 5570 5319 3548 170 31 24 chr11 113498457 113499170 -35284302 + L1MC1 LINE L1 5600 6317 -16 449 223 58 0 chr11 113499888 113500009 -35283463 - MIR SINE MIR -76 186 59 543 167 136 19 chr11 113500009 113500171 -35283301 - MER53 DNA DNA 0 189 9 313 285 272 6 chr11 113500393 113500551 -35282921 - MIR SINE MIR -19 243 44 862 202 33 16 chr11 113500593 113500776 -35282696 - MER5A DNA MER1_type 0 189 4 1656 160 4 0 chr11 113501091 113501354 -35282118 + AluJb SINE Alu 11 274 -38 216 0 0 0 chr11 113501354 113501378 -35282094 + (TA)n Simple_repeat Simple_repeat 1 24 0 213 248 0 0 chr11 113501405 113501518 -35281954 + (TA)n Simple_repeat Simple_repeat 1 113 0 231 262 141 73 chr11 113502028 113502219 -35281253 + L2 LINE L2 3105 3308 -5 276 30 0 0 chr11 113503167 113503200 -35280272 + (GA)n Simple_repeat Simple_repeat 2 34 0 270 81 0 0 chr11 113504238 113504275 -35279197 + (TG)n Simple_repeat Simple_repeat 2 38 0 1227 227 58 11 chr11 113504384 113504662 -35278810 - AluJo SINE Alu -11 291 1 351 322 112 38 chr11 113504676 113504943 -35278529 - MLT1K LTR MaLR -2 586 300 267 355 33 20 chr11 113504973 113505125 -35278347 + L2 LINE L2 2916 3069 -203 1547 192 26 0 chr11 113505341 113505612 -35277860 + AluJb SINE Alu 1 278 -34 201 39 0 0 chr11 113505619 113505645 -35277827 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 25 51 0 0 chr11 113505678 113505717 -35277755 + AT_rich Low_complexity Low_complexity 1 39 0 199 191 29 15 chr11 113506020 113506088 -35277384 + CT-rich Low_complexity Low_complexity 4 72 0 209 180 16 33 chr11 113506291 113506352 -35277120 + (CAAA)n Simple_repeat Simple_repeat 2 61 0 284 275 108 17 chr11 113506494 113506614 -35276858 + MIR SINE MIR 2 132 -130 210 365 0 35 chr11 113506699 113506784 -35276688 + MIR3 SINE MIR 115 196 -12 184 245 20 0 chr11 113506853 113506902 -35276570 - MIR SINE MIR -108 154 105 920 327 71 15 chr11 113506993 113507387 -35276085 + LTR16A LTR ERVL 35 450 0 30 77 0 0 chr11 113507517 113507582 -35275890 + AT_rich Low_complexity Low_complexity 1 65 0 2180 109 3 0 chr11 113508169 113508471 -35275001 + AluSq SINE Alu 1 303 -10 1749 168 7 75 chr11 113508611 113509027 -35274445 - MLT1B LTR MaLR 0 390 3 283 329 101 33 chr11 113509252 113509635 -35273837 - L2 LINE L2 -224 3048 2525 208 338 90 8 chr11 113509716 113509849 -35273623 - L2 LINE L2 -936 2378 2235 26 0 0 0 chr11 113510659 113510685 -35272787 + AT_rich Low_complexity Low_complexity 1 26 0 238 212 0 118 chr11 113510685 113510770 -35272702 + MIR SINE MIR 184 258 -4 1227 209 41 45 chr11 113510878 113511170 -35272302 + AluJo SINE Alu 1 291 -21 243 272 240 16 chr11 113513057 113513182 -35270290 - MIR SINE MIR -50 212 60 279 54 0 0 chr11 113513504 113513541 -35269931 + (TTTTTA)n Simple_repeat Simple_repeat 4 40 0 2267 128 6 6 chr11 113514182 113514540 -35268932 - L1PB1 LINE L1 -3 6148 5791 246 156 0 0 chr11 113514549 113514594 -35268878 + (TA)n Simple_repeat Simple_repeat 1 45 0 1302 225 119 38 chr11 113514702 113515129 -35268343 + MLT1C LTR MaLR 4 465 -2 182 318 16 0 chr11 113515131 113515194 -35268278 + L2 LINE L2 3246 3309 -4 293 270 34 0 chr11 113517780 113517869 -35265603 + MLT1H LTR MaLR 216 307 -242 1423 118 66 0 chr11 113518105 113518317 -35265155 + MER30 DNA MER1_type 1 226 -4 1043 312 38 28 chr11 113518942 113519368 -35264104 + ERVL LTR ERVL 3712 4141 -1623 537 256 181 19 chr11 113519406 113519676 -35263796 + ERVL LTR ERVL 4182 4495 -1159 2588 185 2 65 chr11 113519735 113520275 -35263197 + MLT2B2 LTR ERVL 3 508 -7 448 252 26 33 chr11 113520629 113520780 -35262692 + LTR50 LTR ERVL 18 167 -628 1928 157 81 25 chr11 113520988 113521384 -35262088 - MSTB LTR MaLR 0 426 9 427 209 30 97 chr11 113521386 113521585 -35261887 + LTR33A LTR ERVL 344 506 -17 714 190 11 78 chr11 113522271 113522450 -35261022 - MLT1D LTR MaLR -338 167 1 1983 78 0 19 chr11 113523007 113523264 -35260208 - AluY SINE Alu -12 299 48 325 276 8 32 chr11 113524368 113524491 -35258981 - L1MC4 LINE L1 -1311 6731 6612 406 332 89 21 chr11 113524777 113524967 -35258505 + MIR SINE MIR 4 206 -56 201 362 0 0 chr11 113525030 113525088 -35258384 - MIR SINE MIR -109 99 42 2353 64 3 3 chr11 113525263 113525560 -35257912 + AluY SINE Alu 1 297 -14 1089 263 61 10 chr11 113527236 113527529 -35255943 + MLT1I LTR MaLR 87 394 -15 21 0 0 0 chr11 113528330 113528351 -35255121 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr11 113528433 113528454 -35255018 + (TG)n Simple_repeat Simple_repeat 2 22 0 366 168 42 8 chr11 113528454 113528573 -35254899 + (TA)n Simple_repeat Simple_repeat 1 123 0 298 295 67 38 chr11 113528594 113528940 -35254532 + L1MEc LINE L1 1906 2261 -4135 * 614 269 47 9 chr11 113528928 113529140 -35254332 - L1M4 LINE L1 -3759 2387 2168 1764 46 67 13 chr11 113529545 113529783 -35253689 - L1PA5 LINE L1 0 6154 5904 895 162 0 19 chr11 113532425 113532579 -35250893 + Tigger1 DNA MER2_type 1 151 -2267 * 944 170 108 5 chr11 113532575 113532769 -35250703 + Tigger1 DNA MER2_type 2202 2415 -3 588 118 0 0 chr11 113533327 113533412 -35250060 + L1PA12 LINE L1 7 91 -7490 1595 140 8 0 chr11 113533413 113533678 -35249794 + L1PA14 LINE L1 5895 6161 0 401 289 57 19 chr11 113533697 113533908 -35249564 + L1M4c LINE L1 1179 1397 -4987 1904 305 71 0 chr11 113533908 113534275 -35249197 + L1PA7 LINE L1 5551 5943 -211 1755 156 3 3 chr11 113534285 113534567 -35248905 - L1PA12 LINE L1 -7184 397 116 1680 73 0 17 chr11 113534567 113534800 -35248672 + L1PA7 LINE L1 5926 6154 0 349 323 72 6 chr11 113534850 113535017 -35248455 + L1M4c LINE L1 1373 1550 -4832 198 0 0 0 chr11 113535448 113535470 -35248002 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 381 284 120 27 chr11 113535674 113535857 -35247615 - MIR SINE MIR -27 235 36 245 188 31 0 chr11 113536321 113536385 -35247087 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 237 139 0 0 chr11 113536727 113536770 -35246702 + (TC)n Simple_repeat Simple_repeat 1 43 0 322 94 31 0 chr11 113537218 113537282 -35246190 + GA-rich Low_complexity Low_complexity 2 67 0 4938 137 44 16 chr11 113537570 113538440 -35245032 - Tigger3b DNA MER2_type 0 1231 338 1143 81 0 27 chr11 113538621 113538657 -35244815 + (TTTC)n Simple_repeat Simple_repeat 1 215 0 1143 81 0 27 chr11 113538657 113538842 -35244630 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1942 162 7 0 chr11 113538958 113539267 -35244205 - AluSx SINE Alu -1 311 1 257 316 0 0 chr11 113539267 113539346 -35244126 + MIR SINE MIR 95 173 -89 406 352 16 26 chr11 113539401 113539594 -35243878 - MIR SINE MIR -69 193 3 825 239 52 40 chr11 113539731 113539982 -35243490 - L2 LINE L2 -1 3312 3059 224 280 11 75 chr11 113540010 113540103 -35243369 + MIR SINE MIR 106 192 -70 22 0 0 0 chr11 113542149 113542171 -35241301 + AT_rich Low_complexity Low_complexity 1 22 0 398 129 20 40 chr11 113542717 113542818 -35240654 + (TATG)n Simple_repeat Simple_repeat 2 100 0 2064 234 45 8 chr11 113543406 113543876 -35239596 - MER82 DNA MER2_type 0 653 167 1236 209 10 10 chr11 113543877 113544169 -35239303 + L1P LINE L1 4426 4717 -1429 344 49 0 6 chr11 113544163 113544227 -35239245 + L1P4 LINE L1 5514 5576 -580 * 234 173 19 0 chr11 113544212 113544264 -35239208 + L1PA13 LINE L1 6104 6156 -7 * 665 260 64 0 chr11 113544270 113544443 -35239029 - MER82 DNA MER2_type -469 184 1 22 35 0 0 chr11 113544988 113545017 -35238455 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr11 113545168 113545191 -35238281 + AT_rich Low_complexity Low_complexity 1 23 0 45 0 0 0 chr11 113545404 113545449 -35238023 + AT_rich Low_complexity Low_complexity 1 45 0 2434 264 50 56 chr11 113545612 113546613 -35236859 + L1M4 LINE L1 4 1224 -5635 244 178 44 0 chr11 113546822 113546867 -35236605 + L1M4 LINE L1 1177 1223 -5636 1743 260 93 14 chr11 113547130 113547841 -35235631 + L1M4 LINE L1 1228 1994 -4861 709 207 0 7 chr11 113547863 113547998 -35235474 + AluJb SINE Alu 1 134 -178 400 250 64 6 chr11 113547999 113548155 -35235317 + L1M4 LINE L1 2005 2169 -4790 311 116 0 0 chr11 113548158 113548201 -35235271 + FRAM/FAM SINE Alu 33 75 -100 296 341 22 43 chr11 113548221 113548359 -35235113 + L1MCb LINE L1 309 443 -5602 1827 232 101 22 chr11 113548382 113549017 -35234455 + L1MCb LINE L1 567 1248 -4851 1895 257 38 25 chr11 113549119 113549799 -35233673 + L1M4 LINE L1 4823 5511 -1446 786 220 7 61 chr11 113549815 113550063 -35233409 + L1MC3 LINE L1 6137 6343 -1 375 165 9 104 chr11 113550059 113550174 -35233298 + L1MCb LINE L1 1880 1983 -4581 * 22 0 0 0 chr11 113551220 113551242 -35232230 + AT_rich Low_complexity Low_complexity 1 22 0 223 306 106 0 chr11 113551494 113551579 -35231893 + L2 LINE L2 3219 3312 -1 1123 198 45 16 chr11 113552145 113552388 -35231084 + Tigger1 DNA MER2_type 1 250 -2168 2256 76 152 231 chr11 113552388 113553083 -35230389 - LTR12 LTR ERV1 -24 690 52 2536 23 10 7 chr11 113553083 113553391 -35230081 + AluYb8 SINE Alu 1 309 -9 2256 76 152 231 chr11 113553391 113553408 -35230064 - LTR12 LTR ERV1 -662 52 35 919 244 120 29 chr11 113553600 113553916 -35229556 - MLT2C1 LTR ERVL -48 349 5 199 267 33 33 chr11 113553989 113554049 -35229423 + MIR3 SINE MIR 138 197 -11 1743 198 46 17 chr11 113555103 113555609 -35227863 + LTR69 LTR ERVL 4 588 0 274 269 48 0 chr11 113555713 113555817 -35227655 + LTR37B LTR ERV1 201 309 -159 426 257 51 11 chr11 113555861 113556036 -35227436 + Charlie7 DNA MER1_type 2133 2314 -298 248 306 68 36 chr11 113556154 113556373 -35227099 + L1ME LINE L1 1125 1350 -5284 643 299 94 44 chr11 113556386 113557205 -35226267 + L1ME LINE L1 1286 2062 -4763 1791 176 28 11 chr11 113557205 113557564 -35225908 + MLT1A1 LTR MaLR 1 365 0 250 162 44 0 chr11 113557574 113557642 -35225830 + (TA)n Simple_repeat Simple_repeat 2 72 0 203 239 30 0 chr11 113557618 113557685 -35225787 + A-rich Low_complexity Low_complexity 4 72 0 * 643 299 94 44 chr11 113557642 113558079 -35225393 + L1ME LINE L1 2070 2827 -3998 23 54 0 0 chr11 113558255 113558292 -35225180 + AT_rich Low_complexity Low_complexity 1 37 0 11734 193 12 27 chr11 113558463 113561055 -35222417 + L1ME LINE L1 2995 5547 -1097 787 276 25 32 chr11 113561068 113561655 -35221817 - L1ME LINE L1 -506 5664 5086 321 287 134 48 chr11 113561714 113561923 -35221549 + MIR SINE MIR 36 262 0 370 145 52 17 chr11 113561973 113562063 -35221409 + MER5A DNA MER1_type 4 112 -77 361 336 172 0 chr11 113563058 113563174 -35220298 + MIR3 SINE MIR 38 173 -35 2057 112 0 40 chr11 113565197 113565500 -35217972 + AluSq SINE Alu 1 291 -22 427 303 140 39 chr11 113565873 113566180 -35217292 + L2 LINE L2 2943 3280 -33 597 321 56 0 chr11 113566204 113566419 -35217053 - MIR SINE MIR -23 239 13 307 345 229 18 chr11 113566735 113567295 -35216177 - L2 LINE L2 -441 2873 2196 1041 138 0 0 chr11 113567663 113567808 -35215664 + LTR8 LTR ERV1 547 691 0 11340 167 13 70 chr11 113567808 113569085 -35214387 + HUERS-P1 LTR ERV1 1 1102 -5161 315 49 0 0 chr11 113569085 113569126 -35214346 + (TC)n Simple_repeat Simple_repeat 2 42 0 11340 167 13 70 chr11 113569126 113570065 -35213407 + HUERS-P1 LTR ERV1 1102 2092 -4171 7320 111 22 47 chr11 113570043 113570658 -35212814 + HUERS-P1 LTR ERV1 4253 4881 -1382 * 2261 98 0 10 chr11 113570658 113570964 -35212508 + AluSc SINE Alu 1 303 -6 7320 111 22 47 chr11 113570964 113571920 -35211552 + HUERS-P1 LTR ERV1 4881 6263 0 4021 113 14 12 chr11 113571920 113572506 -35210966 + LTR8 LTR ERV1 1 587 -104 237 65 0 0 chr11 113572506 113572537 -35210935 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 309 26 0 0 chr11 113573078 113573116 -35210356 + (CA)n Simple_repeat Simple_repeat 2 39 0 262 292 131 58 chr11 113574324 113574461 -35209011 - MER5A DNA MER1_type 0 189 43 445 304 89 24 chr11 113574611 113574779 -35208693 + MIR SINE MIR 13 191 -71 2095 123 0 3 chr11 113575476 113575776 -35207696 + AluSc SINE Alu 1 299 -10 7073 136 1 0 chr11 113576361 113577471 -35206001 + L1P LINE L1 3883 4993 -1153 551 340 34 34 chr11 113577722 113577984 -35205488 + L2 LINE L2 2629 2890 -424 276 323 125 32 chr11 113578040 113578319 -35205153 + L2 LINE L2 3003 3307 -6 267 297 9 54 chr11 113578327 113578438 -35205034 - MIR3 SINE MIR -98 110 5 185 323 32 40 chr11 113579524 113579648 -35203824 - MIR SINE MIR -60 202 80 180 158 0 0 chr11 113580008 113580046 -35203426 + A-rich Low_complexity Low_complexity 1 38 0 241 428 62 3 chr11 113580771 113580920 -35202552 - L2 LINE L2 -566 2748 2609 1872 149 3 29 chr11 113580920 113581228 -35202244 + AluJb SINE Alu 1 300 -12 241 428 62 3 chr11 113581228 113581431 -35202041 - L2 LINE L2 -705 2609 2375 746 268 56 5 chr11 113582301 113582514 -35200958 + MER58A DNA MER1_type 1 224 0 420 113 16 0 chr11 113582614 113582676 -35200796 - L1MA7 LINE L1 -626 5665 5603 * 1877 148 166 20 chr11 113582674 113583078 -35200394 + L1MA7 LINE L1 5665 6127 -164 543 274 73 45 chr11 113583718 113583941 -35199531 + MIR SINE MIR 22 254 -8 38 75 0 0 chr11 113584333 113584413 -35199059 + AT_rich Low_complexity Low_complexity 1 80 0 424 290 19 9 chr11 113584670 113584777 -35198695 - L2 LINE L2 -2 3270 3163 328 363 0 24 chr11 113584791 113584915 -35198557 - MIR SINE MIR -141 121 1 5622 121 19 3 chr11 113585151 113586598 -35196874 + L1PA14 LINE L1 4698 6159 -2 1806 181 6 3 chr11 113586762 113587076 -35196396 + MLT1A1 LTR MaLR 1 315 -50 278 169 0 34 chr11 113587368 113587427 -35196045 + LTR67 LTR ERVL 490 546 -11 2110 155 14 3 chr11 113589191 113589552 -35193920 + MLT1A1 LTR MaLR 1 365 0 45 0 0 0 chr11 113589849 113589894 -35193578 + AT_rich Low_complexity Low_complexity 1 45 0 311 256 73 0 chr11 113589894 113589976 -35193496 + L1MC4 LINE L1 6612 6699 -1343 1278 154 0 45 chr11 113589976 113590197 -35193275 - AluSx SINE Alu -101 211 1 209 311 128 56 chr11 113590767 113590947 -35192525 - MIR3 SINE MIR -13 195 3 220 239 115 53 chr11 113593342 113593455 -35190017 - L2 LINE L2 -12 3301 3182 213 322 33 11 chr11 113593525 113593615 -35189857 - MIR SINE MIR -108 154 63 439 369 53 5 chr11 113594285 113594491 -35188981 + L3 LINE CR1 1338 1553 -24 200 200 18 0 chr11 113594588 113594643 -35188829 + GA-rich Low_complexity Low_complexity 2 57 0 1631 242 108 37 chr11 113594875 113595552 -35187920 + MER50 LTR ERV1 10 734 0 258 32 0 0 chr11 113597451 113597482 -35185990 + (TG)n Simple_repeat Simple_repeat 2 32 0 218 127 56 0 chr11 113597533 113597604 -35185868 + (TA)n Simple_repeat Simple_repeat 2 76 0 608 317 104 62 chr11 113597606 113598367 -35185105 + L1MEc LINE L1 785 1593 -4803 2095 115 0 3 chr11 113598367 113598672 -35184800 + AluSg SINE Alu 1 304 -6 608 317 104 62 chr11 113598672 113598830 -35184642 + L1MEc LINE L1 1593 1743 -4653 267 31 0 0 chr11 113598987 113599019 -35184453 + (A)n Simple_repeat Simple_repeat 1 32 0 216 308 17 34 chr11 113600835 113600952 -35182520 + L2 LINE L2 2646 2760 -554 380 237 152 38 chr11 113601387 113601566 -35181906 + MIR SINE MIR 6 197 -63 21 0 0 0 chr11 113602079 113602100 -35181372 + AT_rich Low_complexity Low_complexity 1 21 0 1596 218 14 17 chr11 113602803 113603157 -35180315 - MLT1A1 LTR MaLR 0 365 13 25 83 0 0 chr11 113605492 113605552 -35177920 + AT_rich Low_complexity Low_complexity 1 60 0 23 68 0 0 chr11 113606745 113606789 -35176683 + AT_rich Low_complexity Low_complexity 1 44 0 332 198 77 22 chr11 113607179 113607270 -35176202 + MIR SINE MIR 110 205 -57 498 310 172 5 chr11 113607505 113607708 -35175764 + MIR SINE MIR 22 258 -4 272 260 26 13 chr11 113608447 113608524 -35174948 + MER103 DNA DNA 3 80 -86 23 0 0 0 chr11 113608986 113609009 -35174463 + AT_rich Low_complexity Low_complexity 1 23 0 4881 57 2 2 chr11 113609031 113609649 -35173823 - L1PA5 LINE L1 -2 6152 5535 189 0 0 0 chr11 113610105 113610126 -35173346 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 207 0 0 0 chr11 113612391 113612414 -35171058 + (TG)n Simple_repeat Simple_repeat 2 24 0 2662 167 13 64 chr11 113612811 113613343 -35170129 + MLT2B2 LTR ERVL 11 515 0 1626 186 74 122 chr11 113615052 113615567 -35167905 + MLT1D LTR MaLR 3 492 -13 193 369 21 43 chr11 113616244 113616385 -35167087 - MIR SINE MIR -119 143 6 338 229 105 8 chr11 113616498 113616634 -35166838 - L1P2 LINE L1 -364 5757 5625 215 61 30 0 chr11 113617501 113617534 -35165938 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 878 183 0 35 chr11 113618119 113618288 -35165184 - FRAM SINE Alu -6 170 8 334 340 39 30 chr11 113618741 113618944 -35164528 - L2 LINE L2 -540 2774 2570 436 293 0 32 chr11 113619974 113620131 -35163341 - L1MC5 LINE L1 -47 7914 7763 207 114 0 0 chr11 113620345 113620380 -35163092 + (TA)n Simple_repeat Simple_repeat 2 36 0 371 172 101 20 chr11 113620982 113621081 -35162391 - L1MCb LINE L1 -5049 996 890 315 0 0 0 chr11 113621081 113621116 -35162356 + (T)n Simple_repeat Simple_repeat 1 35 0 2182 97 0 3 chr11 113621224 113621514 -35161958 - AluSp SINE Alu -24 289 1 1039 180 31 22 chr11 113621521 113621749 -35161723 + LTR54 LTR ERV1 281 510 0 1656 189 0 13 chr11 113621837 113622143 -35161329 - AluJo SINE Alu -8 304 3 357 330 92 31 chr11 113622943 113623204 -35160268 + L2 LINE L2 3031 3307 -6 23 0 0 0 chr11 113623205 113623228 -35160244 + AT_rich Low_complexity Low_complexity 1 23 0 444 280 49 49 chr11 113623417 113623560 -35159912 - MER5A DNA MER1_type -30 159 17 198 343 56 28 chr11 113623571 113623714 -35159758 - MER5B DNA MER1_type -3 175 29 * 216 319 92 35 chr11 113623590 113623731 -35159741 + MER5A DNA MER1_type 34 182 -7 23 33 0 0 chr11 113623899 113623929 -35159543 + AT_rich Low_complexity Low_complexity 1 30 0 312 70 0 0 chr11 113624180 113624188 -35159284 + (CCA)n Simple_repeat Simple_repeat 1 51 0 312 70 0 0 chr11 113624188 113624231 -35159241 + (CCA)n Simple_repeat Simple_repeat 1 43 0 3305 228 31 56 chr11 113624801 113625506 -35157966 + L1M4 LINE L1 3433 4154 -1992 180 0 0 0 chr11 113625506 113625526 -35157946 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 3305 228 31 56 chr11 113625526 113625548 -35157924 + L1M4 LINE L1 4154 4175 -1971 1842 183 0 3 chr11 113625548 113625849 -35157623 + AluJb SINE Alu 2 301 -11 3305 228 31 56 chr11 113625849 113626245 -35157227 + L1M4 LINE L1 4175 4529 -1617 3298 218 39 44 chr11 113626242 113627256 -35156216 + L1MC1 LINE L1 4389 5396 -750 * 1334 197 48 14 chr11 113627263 113627732 -35155740 + AluJo SINE Alu 3 481 0 615 168 0 50 chr11 113627748 113627867 -35155605 + L1MC1 LINE L1 5385 5497 -836 363 219 0 37 chr11 113627868 113627950 -35155522 + Tigger5 DNA MER2_type 1 79 -2244 322 274 0 0 chr11 113627952 113628025 -35155447 - Tigger5 DNA MER2_type -6 2317 2245 * 422 179 39 0 chr11 113628018 113628096 -35155376 + Tigger5 DNA MER2_type 2242 2322 -1 3191 174 41 5 chr11 113628101 113628692 -35154780 + L1MC1 LINE L1 5501 6112 -221 * 5047 112 10 14 chr11 113628691 113629156 -35154316 + L1PB1 LINE L1 5254 5777 -374 273 57 0 0 chr11 113629156 113629191 -35154281 + (TG)n Simple_repeat Simple_repeat 2 36 0 5047 112 10 14 chr11 113629191 113629565 -35153907 + L1PB1 LINE L1 5777 6151 0 229 235 39 0 chr11 113629979 113630030 -35153442 - MER34 LTR ERV1 -108 434 382 3774 178 22 25 chr11 113630049 113630807 -35152665 + Tigger2 DNA MER2_type 2 757 -1961 1356 166 15 19 chr11 113630859 113631118 -35152354 + Tigger2 DNA MER2_type 2461 2718 0 426 258 107 59 chr11 113631118 113631428 -35152044 - MER39 LTR ERV1 -172 535 3 705 235 100 0 chr11 113631430 113631630 -35151842 - L1ME2 LINE L1 -316 5917 5698 2608 289 99 24 chr11 113631633 113632841 -35150631 - L1ME2 LINE L1 -651 5584 4468 1999 138 3 0 chr11 113632841 113633132 -35150340 + AluSx SINE Alu 1 292 -20 5542 68 6 0 chr11 113633132 113633853 -35149619 + L1PA7 LINE L1 5426 6150 -4 2608 289 99 24 chr11 113633853 113634321 -35149151 - L1ME2 LINE L1 -1767 4468 3760 2039 135 10 0 chr11 113634321 113634625 -35148847 - AluSq SINE Alu -6 307 1 2608 289 99 24 chr11 113634625 113634764 -35148708 - L1ME2 LINE L1 -2475 3760 3633 592 242 36 6 chr11 113634757 113634922 -35148550 - L1ME2 LINE L1 -3568 2647 2478 * 765 299 37 17 chr11 113634915 113635209 -35148263 - L1ME2 LINE L1 -5838 558 259 26 64 0 0 chr11 113639570 113639617 -35143855 + AT_rich Low_complexity Low_complexity 1 47 0 24 53 0 0 chr11 113639681 113639719 -35143753 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr11 113641315 113641339 -35142133 + AT_rich Low_complexity Low_complexity 1 24 0 186 310 133 0 chr11 113641427 113641540 -35141932 - MIR SINE MIR -1 261 134 245 195 39 16 chr11 113642124 113642252 -35141220 + (TA)n Simple_repeat Simple_repeat 2 132 0 2365 220 63 12 chr11 113643340 113643945 -35139527 - LTR1B LTR ERV1 0 826 191 504 0 0 0 chr11 113643945 113644001 -35139471 + (TTTC)n Simple_repeat Simple_repeat 4 59 0 2257 86 7 0 chr11 113644008 113644310 -35139162 - L1PA7 LINE L1 -6 6148 5845 2270 97 3 0 chr11 113644410 113644710 -35138762 - AluSx SINE Alu -11 301 1 2822 247 38 50 chr11 113644711 113645625 -35137847 - L1MCb LINE L1 -5142 903 1 26 0 0 0 chr11 113645955 113645981 -35137491 + AT_rich Low_complexity Low_complexity 1 26 0 2692 163 15 11 chr11 113646074 113646597 -35136875 - L1MA4 LINE L1 -1 6299 5775 717 240 125 21 chr11 113647006 113647293 -35136179 + L1MC5 LINE L1 6980 7296 -665 259 171 0 0 chr11 113647329 113647370 -35136102 - L1MC5 LINE L1 -593 7368 7328 28 29 0 0 chr11 113647439 113647474 -35135998 + AT_rich Low_complexity Low_complexity 1 35 0 245 325 12 0 chr11 113647719 113647799 -35135673 - MIR SINE MIR -108 154 74 348 220 5 0 chr11 113647963 113648072 -35135400 + L1ME1 LINE L1 5585 5696 -488 692 236 192 5 chr11 113648079 113648282 -35135190 - MLT1D LTR MaLR 0 505 265 1231 271 79 2 chr11 113648323 113648755 -35134717 + L1ME1 LINE L1 5697 6161 -5 284 327 28 19 chr11 113650534 113650641 -35132831 + L3 LINE CR1 1459 1566 -11 253 344 22 0 chr11 113652106 113652196 -35131276 + MIR SINE MIR 43 134 -128 214 338 39 13 chr11 113652464 113652541 -35130931 - L2 LINE L2 -8 3305 3227 680 197 0 21 chr11 113652671 113652813 -35130659 - FRAM SINE Alu -3 173 35 186 43 0 0 chr11 113652987 113653010 -35130462 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1600 202 3 10 chr11 113653012 113653304 -35130168 - AluJo SINE Alu -22 290 1 1358 231 81 9 chr11 113654505 113654838 -35128634 + LTR18A LTR ERVL 1 357 0 286 276 79 39 chr11 113654846 113654973 -35128499 + MER5A DNA MER1_type 55 186 -3 285 321 37 18 chr11 113654875 113654984 -35128488 - MER5A DNA MER1_type -72 117 7 * 2191 107 0 3 chr11 113655730 113656039 -35127433 + AluSc SINE Alu 1 308 -1 25 0 0 0 chr11 113656295 113656320 -35127152 + AT_rich Low_complexity Low_complexity 1 25 0 212 225 146 45 chr11 113657060 113657149 -35126323 + L3 LINE CR1 381 478 -1099 3100 217 68 9 chr11 113657709 113657892 -35125580 + Charlie1a DNA MER1_type 52 223 -2538 279 0 0 0 chr11 113657892 113657923 -35125549 + (CA)n Simple_repeat Simple_repeat 2 32 0 3100 217 68 9 chr11 113657923 113658524 -35124948 + Charlie1a DNA MER1_type 223 882 -573 27 29 0 0 chr11 113659248 113659282 -35124190 + AT_rich Low_complexity Low_complexity 1 34 0 303 324 28 60 chr11 113659465 113659681 -35123791 - L3b LINE CR1 -252 1331 1123 25 0 0 0 chr11 113659974 113659999 -35123473 + AT_rich Low_complexity Low_complexity 1 25 0 1254 314 41 17 chr11 113660894 113661353 -35122119 + LTR16C LTR ERVL 4 473 -18 1590 239 82 25 chr11 113661535 113661921 -35121551 - MLT1D LTR MaLR -2 503 84 243 0 0 0 chr11 113661921 113661948 -35121524 + (CA)n Simple_repeat Simple_repeat 2 28 0 1590 239 82 25 chr11 113661948 113662037 -35121435 - MLT1D LTR MaLR -421 84 1 476 183 113 0 chr11 113662507 113662622 -35120850 - MLT1F1 LTR MaLR -228 339 212 351 217 43 11 chr11 113662613 113662705 -35120767 + MLT1F1 LTR MaLR 473 567 0 * 810 361 21 16 chr11 113662728 113663110 -35120362 + HERVL LTR ERVL 4014 4397 -1257 2337 89 3 22 chr11 113663305 113663621 -35119851 + AluSg SINE Alu 1 310 0 261 0 0 0 chr11 113663730 113663759 -35119713 + (A)n Simple_repeat Simple_repeat 1 29 0 465 337 57 28 chr11 113663791 113664251 -35119221 + HERVL LTR ERVL 4684 5156 -608 281 233 191 69 chr11 113664558 113664747 -35118725 + MLT1J1 LTR MaLR 3 214 -232 334 390 20 73 chr11 113665637 113666091 -35117381 + L2 LINE L2 2825 3254 -18 1903 258 34 18 chr11 113667259 113667824 -35115648 - L1ME1 LINE L1 -14 6152 5579 623 277 64 67 chr11 113667845 113668264 -35115208 - L1MCc LINE L1 -5983 440 23 632 187 0 0 chr11 113668833 113668940 -35114532 + MSTB1 LTR MaLR 1 107 -319 1120 179 10 10 chr11 113668945 113669141 -35114331 + MSTB1 LTR MaLR 224 419 -13 333 346 86 53 chr11 113669442 113669685 -35113787 + L2 LINE L2 2985 3235 -37 5265 183 14 25 chr11 113669764 113670918 -35112554 + L1MC2 LINE L1 5195 6336 -8 299 217 26 78 chr11 113671260 113671375 -35112097 - MIR SINE MIR -50 212 104 192 200 0 0 chr11 113671553 113671593 -35111879 + CT-rich Low_complexity Low_complexity 2 41 0 1095 329 40 30 chr11 113672877 113673498 -35109974 - L2 LINE L2 0 3313 2681 356 256 10 158 chr11 113673967 113674031 -35109441 + MER5B DNA MER1_type 4 76 -102 2108 122 0 7 chr11 113674031 113674319 -35109153 + AluSq SINE Alu 3 288 -25 356 256 10 158 chr11 113674319 113674457 -35109015 + MER5B DNA MER1_type 76 176 -2 213 345 62 28 chr11 113674495 113674640 -35108832 - MER5A DNA MER1_type 0 189 40 471 335 137 41 chr11 113674698 113675208 -35108264 - L3 LINE CR1 -104 1473 827 21 0 0 0 chr11 113675313 113675334 -35108138 + AT_rich Low_complexity Low_complexity 1 21 0 1632 248 203 2 chr11 113675655 113676207 -35107265 + MLT2F LTR ERVL 1 663 0 1482 284 89 28 chr11 113676426 113677137 -35106335 + L1MCc LINE L1 780 1533 -4890 27 0 0 0 chr11 113677149 113677176 -35106296 + AT_rich Low_complexity Low_complexity 1 27 0 465 229 51 127 chr11 113677372 113677625 -35105847 + L1MCc LINE L1 2231 2464 -4658 2545 280 66 20 chr11 113677627 113678966 -35104506 + L1MCc LINE L1 2754 4125 -2816 953 119 34 23 chr11 113678966 113679142 -35104330 + L1MA2 LINE L1 6127 6304 0 2545 280 66 20 chr11 113679142 113679229 -35104243 + L1MCc LINE L1 4125 4207 -2734 1232 146 8 59 chr11 113679211 113679450 -35104022 - L1PA16 LINE L1 -278 5888 5662 * 1484 111 12 0 chr11 113679446 113679765 -35103707 + L1P4 LINE L1 5162 5485 -681 * 7404 15 0 1 chr11 113679764 113681142 -35102330 - L1HS LINE L1 -61 6094 4718 351 0 0 0 chr11 113681209 113681248 -35102224 + (TG)n Simple_repeat Simple_repeat 1 39 0 318 289 47 84 chr11 113681371 113681561 -35101911 - L1ME2 LINE L1 -13 6151 5969 279 0 0 0 chr11 113681701 113681732 -35101740 + (A)n Simple_repeat Simple_repeat 1 31 0 429 322 87 12 chr11 113681864 113682106 -35101366 + L1MEc LINE L1 1935 2194 -4202 962 256 159 40 chr11 113682236 113683045 -35100427 + L1MEc LINE L1 2385 3290 -2925 273 357 70 14 chr11 113683077 113683220 -35100252 + LTR16A LTR ERVL 34 184 -266 1767 311 90 30 chr11 113683802 113684681 -35098791 + HERV16 LTR ERVL 469 1400 -3596 1169 309 23 21 chr11 113684833 113685264 -35098208 + HERV16 LTR ERVL 1593 2024 -2972 22 0 0 0 chr11 113686450 113686472 -35097000 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr11 113686534 113686557 -35096915 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr11 113686598 113686635 -35096837 + AT_rich Low_complexity Low_complexity 1 37 0 1905 118 0 0 chr11 113686909 113687171 -35096301 + AluSx SINE Alu 35 296 -16 566 208 92 8 chr11 113687185 113687315 -35096157 + LTR54B LTR ERV1 1 141 -357 947 219 55 28 chr11 113687650 113687941 -35095531 + LTR1 LTR ERV1 1 278 -548 3244 66 12 11 chr11 113687941 113688672 -35094800 - L1PA6 LINE L1 -507 5647 4923 1720 67 9 0 chr11 113688672 113688897 -35094575 + L1PA6 LINE L1 5653 5879 -275 249 33 0 0 chr11 113689101 113689131 -35094341 + (A)n Simple_repeat Simple_repeat 1 30 0 2016 120 3 23 chr11 113689139 113689448 -35094024 + AluSx SINE Alu 1 303 -9 1223 131 11 0 chr11 113689453 113689644 -35093828 + L1P4 LINE L1 5479 5671 -495 223 47 0 47 chr11 113689931 113689974 -35093498 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 349 342 39 52 chr11 113690298 113690529 -35092943 - MIR SINE MIR -34 228 1 405 304 96 36 chr11 113690658 113690878 -35092594 + MIR SINE MIR 6 238 -24 470 253 103 86 chr11 113691686 113692034 -35091438 - L1MC4 LINE L1 0 8042 7689 1931 236 186 26 chr11 113692344 113693412 -35090060 - L1MC4 LINE L1 -373 7669 6342 911 267 21 75 chr11 113693411 113693797 -35089675 - L1ME2 LINE L1 -11 6222 5858 * 2857 268 65 43 chr11 113694292 113694418 -35089054 - L1ME2 LINE L1 -343 5890 5768 1519 193 10 33 chr11 113694418 113694723 -35088749 - AluJo SINE Alu -12 300 3 2857 268 65 43 chr11 113694723 113696688 -35086784 - L1ME2 LINE L1 -465 5768 3677 2821 143 36 36 chr11 113696692 113697251 -35086221 + MER34B LTR ERV1 7 565 0 412 279 163 19 chr11 113697304 113697386 -35086086 - L1ME2 LINE L1 -2579 3636 3567 360 59 0 0 chr11 113697386 113697437 -35086035 + (TG)n Simple_repeat Simple_repeat 2 52 0 412 279 163 19 chr11 113697437 113697612 -35085860 - L1ME2 LINE L1 -2648 3567 3342 273 140 20 0 chr11 113697763 113697813 -35085659 - Alu SINE Alu -4 298 248 389 284 103 34 chr11 113697844 113698164 -35085308 - L1ME2 LINE L1 -4130 2266 1925 263 230 11 0 chr11 113698508 113698595 -35084877 + CT-rich Low_complexity Low_complexity 2 89 0 1607 221 39 30 chr11 113699725 113700186 -35083286 - MLT1C LTR MaLR 0 467 3 580 238 91 43 chr11 113702583 113702658 -35080814 - MER58A DNA MER1_type -2197 223 153 1938 137 20 0 chr11 113702658 113702950 -35080522 + AluSx SINE Alu 1 298 -14 580 238 91 43 chr11 113702950 113703084 -35080388 - MER58A DNA MER1_type -2267 153 4 484 287 90 92 chr11 113703317 113703707 -35079765 + HAL1 LINE L1 26 414 -2093 1678 149 10 48 chr11 113703778 113704073 -35079399 + AluSq SINE Alu 6 289 -24 21 57 0 0 chr11 113704073 113704108 -35079364 + AT_rich Low_complexity Low_complexity 1 35 0 2248 162 32 5 chr11 113704108 113704509 -35078963 - L1PA16 LINE L1 -9 6157 5746 802 231 48 42 chr11 113704782 113705094 -35078378 + HAL1 LINE L1 803 1116 -1391 402 257 301 0 chr11 113705122 113705258 -35078214 - MER5A DNA MER1_type -3 186 10 501 279 104 95 chr11 113705258 113706047 -35077425 + HAL1 LINE L1 1127 1922 -585 1854 214 80 104 chr11 113706190 113706902 -35076570 - LTR8A LTR ERV1 0 727 33 225 0 0 0 chr11 113707445 113707470 -35076002 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 247 311 33 0 chr11 113707820 113707881 -35075591 - L2 LINE L2 -2 3311 3249 185 325 141 79 chr11 113708443 113708720 -35074752 + L2 LINE L2 2560 2853 -461 750 276 135 72 chr11 113708832 113709165 -35074307 + MLT1G1 LTR MaLR 1 384 -211 474 49 0 0 chr11 113709165 113709226 -35074246 + (GA)n Simple_repeat Simple_repeat 2 62 0 750 276 135 72 chr11 113709226 113709446 -35074026 + MLT1G1 LTR MaLR 384 589 -6 688 270 76 22 chr11 113709846 113710134 -35073338 - MLT1G1 LTR MaLR -323 267 1 299 263 40 40 chr11 113710722 113710821 -35072651 + MIR SINE MIR 14 112 -150 244 316 81 59 chr11 113711068 113711204 -35072268 + L2 LINE L2 3134 3272 0 23 33 0 0 chr11 113711218 113711248 -35072224 + AT_rich Low_complexity Low_complexity 1 30 0 762 161 0 0 chr11 113711248 113711366 -35072106 - FLAM_C SINE Alu -25 118 1 218 73 0 91 chr11 113711470 113711525 -35071947 + (TTTTA)n Simple_repeat Simple_repeat 4 53 0 21 0 0 0 chr11 113711737 113711758 -35071714 + AT_rich Low_complexity Low_complexity 1 21 0 448 240 39 0 chr11 113713018 113713122 -35070350 + MER68 LTR ERV1 424 531 -31 21 36 0 0 chr11 113713209 113713237 -35070235 + AT_rich Low_complexity Low_complexity 1 28 0 212 195 0 0 chr11 113713605 113713646 -35069826 + MIR SINE MIR 148 188 -74 389 262 82 22 chr11 113713738 113713921 -35069551 - L1M4 LINE L1 -1729 4417 4224 1336 286 3 0 chr11 113713924 113714291 -35069181 - L1M4 LINE L1 -2016 4130 3763 23 33 0 0 chr11 113714713 113714743 -35068729 + AT_rich Low_complexity Low_complexity 1 30 0 1490 179 30 3 chr11 113715059 113715356 -35068116 - L1MC1 LINE L1 -1 6332 6028 448 212 91 61 chr11 113715378 113715484 -35067988 - LTR37B LTR ERV1 -2 466 365 2287 91 7 0 chr11 113715484 113715791 -35067681 - AluSg SINE Alu -1 309 1 448 212 91 61 chr11 113715791 113715882 -35067590 - LTR37B LTR ERV1 -103 365 263 239 229 16 16 chr11 113716084 113716145 -35067327 - LTR37B LTR ERV1 -401 67 7 2304 196 97 10 chr11 113716612 113717126 -35066346 + MER89 LTR ERV1 1 559 0 186 301 178 20 chr11 113717188 113717334 -35066138 - L2 LINE L2 -4 3309 3141 234 150 0 0 chr11 113717943 113717983 -35065489 + (TG)n Simple_repeat Simple_repeat 1 40 0 3456 162 27 31 chr11 113718196 113718673 -35064799 - MER67C LTR ERV1 0 710 235 1935 140 26 34 chr11 113718673 113719051 -35064421 - THE1C LTR MaLR 0 375 1 3456 162 27 31 chr11 113719051 113719277 -35064195 - MER67C LTR ERV1 -475 235 10 687 220 101 0 chr11 113720777 113720936 -35062536 + FAM SINE Alu 1 175 0 198 0 0 0 chr11 113721185 113721207 -35062265 + (A)n Simple_repeat Simple_repeat 1 22 0 239 321 24 12 chr11 113721524 113721608 -35061864 - L2 LINE L2 -4 3268 3184 238 377 38 19 chr11 113721678 113721784 -35061688 + L2 LINE L2 3136 3243 -29 3024 199 32 31 chr11 113722360 113723070 -35060402 - L1MB8 LINE L1 -149 6265 5555 2740 175 22 9 chr11 113723070 113723608 -35059864 - L1MC1 LINE L1 0 6333 5789 5564 241 57 44 chr11 113723640 113725006 -35058466 - L1MB8 LINE L1 -1950 4432 3050 4980 149 8 12 chr11 113725006 113726700 -35056772 - L1PA16 LINE L1 -6 6160 4438 5564 241 57 44 chr11 113726700 113727579 -35055893 - L1MB8 LINE L1 -3332 3050 2184 1679 122 0 44 chr11 113727620 113727890 -35055582 + AluSg SINE Alu 38 295 -15 28 29 0 0 chr11 113727990 113728025 -35055447 + AT_rich Low_complexity Low_complexity 1 35 0 301 318 40 58 chr11 113728026 113728199 -35055273 - L1MB8 LINE L1 -4541 1843 1674 289 270 119 8 chr11 113728985 113729111 -35054361 + MIR3 SINE MIR 69 208 0 1399 210 42 64 chr11 113729456 113729860 -35053612 - MSTD LTR MaLR -1 395 1 32 26 0 0 chr11 113731540 113731579 -35051893 + AT_rich Low_complexity Low_complexity 1 39 0 260 289 24 36 chr11 113731704 113731787 -35051685 + MIR SINE MIR 21 102 -160 846 263 34 0 chr11 113732133 113732342 -35051130 - MER58A DNA MER1_type -6 218 3 202 339 0 15 chr11 113732553 113732618 -35050854 - MER5A DNA MER1_type -62 127 64 201 269 0 19 chr11 113732736 113732788 -35050684 + MIR SINE MIR 67 117 -145 1067 194 48 15 chr11 113733029 113733235 -35050237 - MER20 DNA MER1_type 0 219 7 281 361 0 15 chr11 113733314 113733447 -35050025 + MLT1E LTR MaLR 17 147 -446 4113 151 35 1 chr11 113733493 113733828 -35049644 - L1MA8 LINE L1 -3 6288 5954 5027 191 37 14 chr11 113733828 113735313 -35048159 - L1PB3 LINE L1 -224 5930 4408 2198 169 50 32 chr11 113735344 113735786 -35047686 - MSTB2 LTR MaLR 0 457 1 2321 167 22 20 chr11 113735786 113736236 -35047236 - L1PB3 LINE L1 -1749 4397 3947 337 216 8 53 chr11 113736267 113736386 -35047086 + MLT1E LTR MaLR 246 402 -191 442 210 90 0 chr11 113736554 113736654 -35046818 - L1 LINE L1 -2042 4104 3996 689 261 0 0 chr11 113736676 113736814 -35046658 + MER77 LTR ERV1 245 382 -223 537 250 53 20 chr11 113736831 113736983 -35046489 + MLT1E LTR MaLR 435 591 -2 23 0 0 0 chr11 113736999 113737022 -35046450 + AT_rich Low_complexity Low_complexity 1 23 0 2034 244 37 58 chr11 113737517 113738135 -35045337 + MER77 LTR ERV1 1 605 0 229 368 71 38 chr11 113738166 113738405 -35045067 + L3 LINE CR1 37 283 -1294 181 188 0 0 chr11 113738486 113738518 -35044954 + L2 LINE L2 3269 3300 -13 1099 280 96 30 chr11 113738537 113738997 -35044475 + L3 LINE CR1 280 769 -808 255 284 176 0 chr11 113738997 113739071 -35044401 + L3 LINE CR1 890 976 -601 261 57 0 0 chr11 113739099 113739134 -35044338 + (TG)n Simple_repeat Simple_repeat 2 36 0 199 120 20 20 chr11 113740232 113740282 -35043190 + (TA)n Simple_repeat Simple_repeat 1 50 0 1809 135 76 20 chr11 113740789 113741144 -35042328 + THE1C LTR MaLR 1 375 0 605 340 47 27 chr11 113741242 113741580 -35041892 - LTR16A LTR ERVL -6 444 100 206 137 41 41 chr11 113741804 113741877 -35041595 + (TTATA)n Simple_repeat Simple_repeat 5 77 0 22 0 0 0 chr11 113742354 113742376 -35041096 + AT_rich Low_complexity Low_complexity 1 22 0 473 291 57 6 chr11 113742818 113742976 -35040496 + MIR SINE MIR 5 170 -92 21 36 0 0 chr11 113743232 113743260 -35040212 + AT_rich Low_complexity Low_complexity 1 28 0 607 313 77 12 chr11 113743373 113743619 -35039853 - MIR SINE MIR 0 262 1 2143 167 40 5 chr11 113744232 113744609 -35038863 - MLT1B LTR MaLR 0 390 1 1996 121 3 10 chr11 113744667 113744964 -35038508 + AluSx SINE Alu 13 307 -5 23 0 0 0 chr11 113745666 113745689 -35037783 + AT_rich Low_complexity Low_complexity 1 23 0 1283 160 0 35 chr11 113745937 113746168 -35037304 + AluJo SINE Alu 87 309 -3 2341 109 0 0 chr11 113746255 113746567 -35036905 + AluSx SINE Alu 1 312 0 2102 138 0 0 chr11 113749015 113749312 -35034160 + AluSx SINE Alu 1 297 -15 1847 130 76 20 chr11 113749483 113749838 -35033634 + THE1C LTR MaLR 1 375 0 612 341 46 25 chr11 113749949 113750272 -35033200 - LTR16A LTR ERVL -21 429 100 206 137 41 41 chr11 113750496 113750569 -35032903 + (TTATA)n Simple_repeat Simple_repeat 5 77 0 22 0 0 0 chr11 113751046 113751068 -35032404 + AT_rich Low_complexity Low_complexity 1 22 0 473 291 57 6 chr11 113751510 113751668 -35031804 + MIR SINE MIR 5 170 -92 21 36 0 0 chr11 113751924 113751952 -35031520 + AT_rich Low_complexity Low_complexity 1 28 0 607 313 77 12 chr11 113752065 113752311 -35031161 - MIR SINE MIR 0 262 1 2143 167 40 5 chr11 113752924 113753301 -35030171 - MLT1B LTR MaLR 0 390 1 2016 118 3 10 chr11 113753359 113753656 -35029816 + AluSx SINE Alu 13 307 -5 22 0 0 0 chr11 113754356 113754378 -35029094 + AT_rich Low_complexity Low_complexity 1 22 0 1283 160 0 35 chr11 113754627 113754858 -35028614 + AluJo SINE Alu 87 309 -3 2074 113 0 0 chr11 113754945 113755219 -35028253 + AluSx SINE Alu 1 274 -38 468 0 0 0 chr11 113755220 113755272 -35028200 + (TA)n Simple_repeat Simple_repeat 2 53 0 218 207 24 24 chr11 113755351 113755433 -35028039 + (TA)n Simple_repeat Simple_repeat 2 83 0 210 292 104 21 chr11 113755776 113755872 -35027600 + MIR SINE MIR 38 141 -121 388 298 71 15 chr11 113756127 113756325 -35027147 + MIR SINE MIR 15 223 -39 2080 123 3 7 chr11 113756546 113756854 -35026618 - AluSq SINE Alu 0 313 7 321 47 0 0 chr11 113756860 113756903 -35026569 + (TTG)n Simple_repeat Simple_repeat 2 44 0 22 35 0 0 chr11 113757439 113757468 -35026004 + AT_rich Low_complexity Low_complexity 1 29 0 31 0 0 0 chr11 113757672 113757703 -35025769 + AT_rich Low_complexity Low_complexity 1 31 0 22 80 0 0 chr11 113757824 113757874 -35025598 + AT_rich Low_complexity Low_complexity 1 50 0 295 301 14 0 chr11 113758035 113758108 -35025364 + MLT1K LTR MaLR 179 252 -336 376 200 76 55 chr11 113760445 113760590 -35022882 - LTR19A LTR ERV1 -12 474 327 4147 294 29 32 chr11 113760766 113762797 -35020675 - HERVFH19I LTR ERV1 0 7719 5717 538 268 14 0 chr11 113762806 113762948 -35020524 - HERVFH19I LTR ERV1 -2406 5313 5170 3088 231 32 36 chr11 113763210 113763993 -35019479 - HERVFH19I LTR ERV1 -5239 2480 1701 1099 270 20 25 chr11 113764386 113764744 -35018728 - HERVFH19I LTR ERV1 -4912 674 286 2520 59 0 0 chr11 113764744 113765048 -35018424 + AluY SINE Alu 1 304 -7 1099 270 20 25 chr11 113765048 113765332 -35018140 - HERVFH19I LTR ERV1 -5300 286 2 443 178 62 54 chr11 113765344 113765473 -35017999 - LTR19A LTR ERV1 -3 483 354 2118 106 7 3 chr11 113765475 113765776 -35017696 - AluSq SINE Alu -11 302 1 3799 158 46 51 chr11 113765974 113766683 -35016789 + MER4D LTR ERV1 1 461 -149 1973 72 8 0 chr11 113766683 113766947 -35016525 + L1PA6 LINE L1 5888 6153 -1 3799 158 46 51 chr11 113766947 113767096 -35016376 + MER4D LTR ERV1 461 609 -1 3100 169 67 54 chr11 113767216 113767991 -35015481 + LTR1 LTR ERV1 1 785 0 4139 77 13 0 chr11 113768397 113768944 -35014528 + MER41A LTR ERV1 1 554 0 406 270 141 53 chr11 113769176 113769251 -35014221 - L2 LINE L2 -37 3276 3209 1423 114 4 51 chr11 113769251 113769366 -35014106 - MER30 DNA MER1_type -4 226 126 1980 135 7 3 chr11 113769366 113769684 -35013788 - AluSg SINE Alu 0 310 1 1423 114 4 51 chr11 113769684 113769805 -35013667 - MER30 DNA MER1_type -104 126 1 406 270 141 53 chr11 113769805 113770033 -35013439 - L2 LINE L2 -104 3209 2946 205 301 203 38 chr11 113770178 113770311 -35013161 - MIR3 SINE MIR -21 187 33 189 0 0 0 chr11 113770628 113770649 -35012823 + (A)n Simple_repeat Simple_repeat 1 21 0 441 296 61 53 chr11 113771473 113771945 -35011527 + MLT1G1 LTR MaLR 75 579 -16 189 328 0 35 chr11 113772499 113772557 -35010915 + L2 LINE L2 3205 3260 -12 251 196 0 18 chr11 113772667 113772723 -35010749 - L1M4 LINE L1 -1981 4165 4111 491 312 111 6 chr11 113772746 113773079 -35010393 - L1M4 LINE L1 -2324 3822 3455 27 0 0 0 chr11 113773328 113773355 -35010117 + AT_rich Low_complexity Low_complexity 1 27 0 329 206 69 53 chr11 113773411 113773542 -35009930 + L1ME LINE L1 4549 4681 -1465 227 303 0 17 chr11 113773639 113773758 -35009714 + L1ME LINE L1 4929 5045 -1101 254 51 51 0 chr11 113773769 113773808 -35009664 - AluSc SINE Alu -174 125 85 721 294 73 23 chr11 113773879 113774381 -35009091 + L1ME LINE L1 5132 5659 -511 539 15 15 0 chr11 113774389 113774457 -35009015 + (TAGA)n Simple_repeat Simple_repeat 3 71 0 282 284 0 0 chr11 113774457 113774524 -35008948 + L1MC4a LINE L1 5572 5638 -2170 653 274 33 23 chr11 113774583 113774798 -35008674 - MER46C DNA MER2_type 0 338 122 459 243 9 154 chr11 113774868 113775082 -35008390 - MER5A DNA MER1_type 0 189 7 427 304 48 26 chr11 113776914 113777141 -35006331 + L1MC4a LINE L1 5719 5950 -1858 489 360 61 8 chr11 113777739 113778000 -35005472 + L3 LINE CR1 387 661 -916 12642 207 43 32 chr11 113778124 113782394 -35001078 + L1M2 LINE L1 5 4310 -2538 333 0 0 0 chr11 113782498 113782535 -35000937 + (TG)n Simple_repeat Simple_repeat 2 38 0 621 221 276 0 chr11 113783788 113784096 -34999376 - MER69 DNA AcHobo -9 2517 2125 947 280 44 44 chr11 113784102 113784225 -34999247 + MER69 DNA AcHobo 55 177 -1049 1576 216 40 14 chr11 113784225 113784577 -34998895 + MLT1A1 LTR MaLR 1 361 -4 947 280 44 44 chr11 113784577 113784792 -34998680 + MER69 DNA AcHobo 176 393 -833 389 255 46 20 chr11 113784791 113784944 -34998528 + MER69 DNA AcHobo 1959 2115 -411 * 246 159 0 23 chr11 113785054 113785098 -34998374 - MER69 DNA AcHobo -2482 44 2 218 306 163 0 chr11 113785120 113785218 -34998254 + MIR SINE MIR 28 141 -121 187 369 131 8 chr11 113785281 113785403 -34998069 - L2 LINE L2 -376 2938 2802 341 353 34 38 chr11 113785499 113785734 -34997738 - MIR SINE MIR 0 262 29 1491 185 7 23 chr11 113786567 113786875 -34996597 + AluSx SINE Alu 3 305 -7 1199 187 48 41 chr11 113787863 113788178 -34995294 + MER33 DNA MER1_type 8 324 0 237 320 128 23 chr11 113788424 113788596 -34994876 + MIR3 SINE MIR 1 190 -18 3848 104 16 2 chr11 113789111 113789657 -34993815 - MER41A LTR ERV1 0 554 1 1754 135 6 33 chr11 113790780 113791135 -34992337 - MER4A LTR ERV1 0 664 261 605 160 0 0 chr11 113791137 113791231 -34992241 - MER4A LTR ERV1 -568 96 3 2221 133 0 0 chr11 113791502 113791810 -34991662 - AluSx SINE Alu -4 308 1 2081 128 10 13 chr11 113794254 113794567 -34988905 - AluSx SINE Alu 0 312 1 462 36 0 0 chr11 113794644 113794700 -34988772 + (CA)n Simple_repeat Simple_repeat 1 56 0 581 296 50 47 chr11 113794700 113794907 -34988565 + L1MEc LINE L1 1116 1321 -5075 2071 123 3 29 chr11 113794907 113795223 -34988249 + AluSx SINE Alu 3 310 -2 581 296 50 47 chr11 113795223 113795639 -34987833 + L1MEc LINE L1 1321 1741 -4655 29 28 0 0 chr11 113795645 113795681 -34987791 + AT_rich Low_complexity Low_complexity 1 36 0 706 278 64 32 chr11 113795791 113796400 -34987072 + L1MEc LINE L1 2023 2618 -3597 922 207 51 65 chr11 113796411 113796686 -34986786 - MLT1D LTR MaLR -234 271 1 515 292 156 45 chr11 113797240 113797573 -34985899 - LTR16A1 LTR ERVL -3 454 104 458 294 137 36 chr11 113797740 113797988 -34985484 + L2 LINE L2 2830 3102 -211 439 279 101 45 chr11 113798049 113798228 -34985244 + MIR SINE MIR 35 223 -39 245 328 38 46 chr11 113798264 113798395 -34985077 + L2 LINE L2 3169 3298 -15 21 0 0 0 chr11 113798395 113798416 -34985056 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr11 113799177 113799198 -34984274 + (CA)n Simple_repeat Simple_repeat 2 22 0 2637 153 9 5 chr11 113799284 113799722 -34983750 - MER39B LTR ERV1 -213 440 1 1902 174 60 38 chr11 113799964 113800383 -34983089 + MSTA LTR MaLR 1 428 0 2167 117 0 3 chr11 113800502 113800800 -34982672 - AluSx SINE Alu -15 297 1 5311 140 14 33 chr11 113800924 113801836 -34981636 - MER4D LTR ERV1 -8 895 1 1295 142 133 51 chr11 113802128 113802444 -34981028 + MER4A LTR ERV1 1 342 -322 561 117 250 8 chr11 113802490 113802618 -34980854 + MER4C LTR ERV1 289 447 -18 505 262 89 30 chr11 113802882 113803050 -34980422 - MER5A DNA MER1_type 0 189 12 2221 215 21 43 chr11 113803050 113803533 -34979939 + MER70A LTR ERVL 1 472 0 23 0 0 0 chr11 113805597 113805620 -34977852 + AT_rich Low_complexity Low_complexity 1 23 0 25 51 0 0 chr11 113805932 113805971 -34977501 + AT_rich Low_complexity Low_complexity 1 39 0 758 175 92 113 chr11 113806089 113806318 -34977154 - AluJo SINE Alu -17 295 72 726 155 21 63 chr11 113806332 113806474 -34976998 - AluJo SINE Alu -176 136 1 2386 87 0 0 chr11 113806873 113807172 -34976300 + AluSg SINE Alu 1 299 -11 220 331 154 0 chr11 113807482 113807612 -34975860 - MIR3 SINE MIR -29 179 30 213 250 66 53 chr11 113808678 113808754 -34974718 + MIR SINE MIR 90 166 -96 21 57 0 0 chr11 113809112 113809147 -34974325 + AT_rich Low_complexity Low_complexity 1 35 0 425 339 76 21 chr11 113809413 113809791 -34973681 + L1M4 LINE L1 4800 5207 -939 3616 153 18 15 chr11 113809791 113810463 -34973009 + L1MA4A LINE L1 5618 6291 -12 425 339 76 21 chr11 113810463 113810520 -34972952 + L1M4 LINE L1 5207 5259 -887 503 301 141 14 chr11 113810797 113811010 -34972462 - MIR SINE MIR 0 262 23 201 39 0 0 chr11 113811132 113811158 -34972314 + (TA)n Simple_repeat Simple_repeat 2 27 0 273 160 83 0 chr11 113811724 113811837 -34971635 + (TA)n Simple_repeat Simple_repeat 1 103 -272 25 90 0 0 chr11 113811837 113811904 -34971568 + AT_rich Low_complexity Low_complexity 1 67 0 273 160 83 0 chr11 113811904 113812071 -34971401 + (TA)n Simple_repeat Simple_repeat 103 375 0 27 49 0 0 chr11 113812071 113812112 -34971360 + AT_rich Low_complexity Low_complexity 1 41 0 237 158 79 0 chr11 113812112 113812188 -34971284 + (TA)n Simple_repeat Simple_repeat 1 82 0 477 228 29 22 chr11 113813029 113813165 -34970307 - L1ME3A LINE L1 -3 6167 6031 434 227 0 0 chr11 113813360 113813435 -34970037 + MER21B LTR ERV1 13 87 -776 2639 244 99 22 chr11 113813458 113814192 -34969280 + MER21B LTR ERV1 21 811 -52 35 24 0 0 chr11 113814565 113814607 -34968865 + AT_rich Low_complexity Low_complexity 1 42 0 483 237 82 102 chr11 113814665 113815138 -34968334 - L1MC5 LINE L1 -137 7824 7361 529 243 122 49 chr11 113815171 113815418 -34968054 - L1MC5 LINE L1 -684 7277 7013 236 86 97 11 chr11 113815697 113815790 -34967682 + (TA)n Simple_repeat Simple_repeat 1 101 0 367 273 88 119 chr11 113816655 113816915 -34966557 + LTR67 LTR ERVL 115 366 -191 2577 118 256 29 chr11 113817764 113818279 -34965193 - MER51A LTR ERV1 -2 632 1 530 191 0 0 chr11 113819569 113819679 -34963793 + L1MA9 LINE L1 6203 6312 0 324 0 0 0 chr11 113819715 113819751 -34963721 + (TG)n Simple_repeat Simple_repeat 2 37 0 1561 283 68 29 chr11 113821139 113822184 -34961288 + L1MB8 LINE L1 1338 2423 -4536 21 57 0 0 chr11 113822457 113822492 -34960980 + AT_rich Low_complexity Low_complexity 1 35 0 649 283 12 0 chr11 113822603 113822776 -34960696 + MLT1D LTR MaLR 22 196 -309 648 224 52 14 chr11 113822783 113822993 -34960479 + L1MB8 LINE L1 5910 6127 -830 229 226 0 19 chr11 113823011 113823064 -34960408 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 3652 193 18 42 chr11 113823064 113823946 -34959526 + L1MB8 LINE L1 6129 6989 0 225 0 0 0 chr11 113824139 113824164 -34959308 + (A)n Simple_repeat Simple_repeat 1 25 0 676 214 48 0 chr11 113824583 113824728 -34958744 - MER5A DNA MER1_type -4 185 34 2603 34 0 0 chr11 113824885 113825182 -34958290 + AluY SINE Alu 1 297 -14 1565 161 17 7 chr11 113825183 113825474 -34957998 - L1 LINE L1 -1293 4853 4560 13479 130 14 67 chr11 113825663 113828098 -34955374 - L1P LINE L1 -3825 2321 16 272 208 0 0 chr11 113828098 113828146 -34955326 - MER46A DNA MER2_type -134 102 55 989 222 70 0 chr11 113828153 113828410 -34955062 + L1 LINE L1 3736 4010 -2136 24954 151 12 19 chr11 113828410 113834818 -34948654 + L1PA8A LINE L1 1 6433 -13 2421 67 0 0 chr11 113834836 113835133 -34948339 + AluY SINE Alu 1 297 -14 1057 174 0 47 chr11 113835133 113835346 -34948126 + L1P LINE L1 4001 4203 -1943 435 60 15 30 chr11 113835366 113835433 -34948039 - L1P4 LINE L1 -469 5699 5634 458 216 0 10 chr11 113835444 113835546 -34947926 - L1M4 LINE L1 -2453 3693 3593 3195 18 109 0 chr11 113835547 113835604 -34947868 + L1PA11 LINE L1 5477 5513 -661 2087 122 0 0 chr11 113835604 113835928 -34947544 + AluSx SINE Alu 7 330 0 3195 18 109 0 chr11 113835928 113835998 -34947474 + L1PA11 LINE L1 5513 5557 -617 3195 108 37 14 chr11 113835998 113836516 -34946956 + L1PA11 LINE L1 5645 6174 0 3195 18 109 0 chr11 113836516 113836539 -34946933 + L1PA11 LINE L1 5557 6174 0 7816 177 23 12 chr11 113836550 113839203 -34944269 + L1MA2 LINE L1 3618 6303 -1 3028 182 6 2 chr11 113839219 113839752 -34943720 + L1PA16 LINE L1 5603 6137 -29 182 298 131 0 chr11 113840814 113840898 -34942574 + MIR SINE MIR 68 162 -100 25 31 0 0 chr11 113841326 113841358 -34942114 + AT_rich Low_complexity Low_complexity 1 32 0 263 341 98 23 chr11 113842093 113842307 -34941165 - MIR SINE MIR -2 260 31 3342 197 27 18 chr11 113843583 113844324 -34939148 - L1MB3 LINE L1 -8 6175 5428 912 349 48 28 chr11 113844650 113845365 -34938107 + L2 LINE L2 2575 3300 -13 225 0 0 0 chr11 113845976 113846001 -34937471 + (TC)n Simple_repeat Simple_repeat 2 26 0 207 0 0 0 chr11 113846000 113846023 -34937449 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 204 97 0 0 chr11 113846162 113846193 -34937279 + (ATTG)n Simple_repeat Simple_repeat 1 31 0 2188 112 0 16 chr11 113846876 113847180 -34936292 - AluSg SINE Alu -11 299 1 198 103 0 0 chr11 113847428 113847457 -34936015 + (TTCTCC)n Simple_repeat Simple_repeat 5 33 0 1566 198 7 7 chr11 113847467 113847765 -34935707 - AluJb SINE Alu -8 304 7 366 246 141 63 chr11 113847935 113848126 -34935346 - L2 LINE L2 0 3313 3108 30 59 0 0 chr11 113848400 113848451 -34935021 + AT_rich Low_complexity Low_complexity 1 51 0 404 266 128 0 chr11 113849119 113849272 -34934200 - MIR SINE MIR -32 176 1 1015 209 15 77 chr11 113849308 113849634 -34933838 + L1MA10 LINE L1 6029 6334 0 327 145 0 0 chr11 113850401 113850470 -34933002 + (CA)n Simple_repeat Simple_repeat 1 69 0 542 172 0 0 chr11 113850599 113850686 -34932786 - AluJ/FLAM SINE Alu -225 87 1 190 403 40 0 chr11 113851803 113851927 -34931545 + L2 LINE L2 2842 2970 -343 197 301 89 57 chr11 113852104 113852227 -34931245 + L2 LINE L2 3175 3301 -12 306 0 0 0 chr11 113852430 113852464 -34931008 + (CA)n Simple_repeat Simple_repeat 2 35 0 384 204 68 7 chr11 113854024 113854171 -34929301 - Charlie5 DNA MER1_type 0 2623 2468 194 379 11 0 chr11 113855635 113855730 -34927742 - L2 LINE L2 0 3272 3177 * 321 373 13 30 chr11 113855727 113855963 -34927509 - L2 LINE L2 -866 2448 2217 369 333 12 58 chr11 113855993 113856164 -34927308 - MIR SINE MIR -87 175 13 212 73 73 0 chr11 113856838 113856879 -34926593 + T-rich Low_complexity Low_complexity 2 45 0 296 282 35 0 chr11 113857814 113857899 -34925573 - MIR SINE MIR -41 221 134 188 355 26 13 chr11 113858154 113858230 -34925242 - MIR SINE MIR -183 79 3 2007 179 60 9 chr11 113858559 113859007 -34924465 + L1M2 LINE L1 3999 4469 -1677 993 237 0 5 chr11 113859018 113859212 -34924260 + AluJo SINE Alu 95 287 -25 3833 191 37 9 chr11 113859235 113860314 -34923158 + L1M2 LINE L1 4457 5556 -735 2121 135 0 0 chr11 113860314 113860626 -34922846 + AluSx SINE Alu 1 312 0 216 0 0 0 chr11 113860825 113860849 -34922623 + (A)n Simple_repeat Simple_repeat 1 24 0 186 133 0 0 chr11 113861544 113861574 -34921898 + (TA)n Simple_repeat Simple_repeat 1 30 0 23 33 0 0 chr11 113861608 113861638 -34921834 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr11 113861774 113861796 -34921676 + AT_rich Low_complexity Low_complexity 1 22 0 190 229 82 16 chr11 113861991 113862052 -34921420 - L2 LINE L2 -3 3269 3205 453 274 0 52 chr11 113862713 113862866 -34920606 - MIR SINE MIR -21 241 97 3667 57 2 2 chr11 113865107 113865578 -34917894 + L1PA5 LINE L1 5679 6149 -5 184 367 0 25 chr11 113866497 113866576 -34916896 + L2 LINE L2 3181 3257 -15 307 226 233 20 chr11 113866670 113866816 -34916656 + MER5B DNA MER1_type 1 177 -1 405 309 154 0 chr11 113866831 113866980 -34916492 - MER5A DNA MER1_type 0 189 18 247 247 55 14 chr11 113866988 113867061 -34916411 + MER81 DNA DNA 39 114 0 573 270 5 46 chr11 113867105 113867246 -34916226 - MER5A DNA MER1_type 0 189 56 1848 134 36 0 chr11 113867246 113867545 -34915927 + AluSx SINE Alu 1 309 0 573 270 5 46 chr11 113867545 113867598 -34915874 - MER5A DNA MER1_type -133 56 2 365 299 125 0 chr11 113867616 113867760 -34915712 - MER5B DNA MER1_type -9 169 8 1136 194 0 28 chr11 113867867 113868078 -34915394 + AluJo SINE Alu 83 287 -25 297 0 0 0 chr11 113868569 113868582 -34914890 + (CA)n Simple_repeat Simple_repeat 1 46 0 297 0 0 0 chr11 113868582 113868615 -34914857 + (CA)n Simple_repeat Simple_repeat 2 34 0 1501 156 11 25 chr11 113868690 113868966 -34914506 + Tigger5 DNA MER2_type 2052 2323 0 1113 320 52 39 chr11 113870200 113870458 -34913014 - L2 LINE L2 0 3313 3060 180 0 0 0 chr11 113870458 113870478 -34912994 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1669 171 0 4 chr11 113870485 113870760 -34912712 - AluJb SINE Alu -36 276 3 1113 320 52 39 chr11 113870760 113871340 -34912132 - L2 LINE L2 -258 3055 2454 1039 259 17 35 chr11 113871371 113871660 -34911812 + L1M4 LINE L1 16 299 -6243 2643 214 14 26 chr11 113871665 113871871 -34911601 + L1MB7 LINE L1 5317 5524 -660 569 64 26 0 chr11 113871871 113871949 -34911523 - MADE1 DNA Mariner 0 80 1 2643 214 14 26 chr11 113871949 113872074 -34911398 + L1MB7 LINE L1 5524 5649 -535 2000 173 3 0 chr11 113872074 113872420 -34911052 + MER7A DNA MER2_type 1 345 -1 2643 214 14 26 chr11 113872420 113872713 -34910759 + L1MB7 LINE L1 5649 5935 -249 21 0 0 0 chr11 113873719 113873740 -34909732 + AT_rich Low_complexity Low_complexity 1 21 0 1587 284 138 11 chr11 113873860 113874403 -34909069 + L1M4 LINE L1 428 1039 -5605 1852 303 42 18 chr11 113874403 113875644 -34907828 - HERVL40 LTR ERVL -1128 4402 3100 889 270 53 17 chr11 113875749 113876049 -34907423 - L1MEc LINE L1 -6048 348 38 402 297 78 64 chr11 113877340 113877714 -34905758 - L1ME4a LINE L1 -86 6035 5657 2263 100 3 0 chr11 113878443 113878742 -34904730 + AluSg SINE Alu 1 300 -10 240 266 109 0 chr11 113878825 113878889 -34904583 + L2 LINE L2 3190 3260 -12 390 118 27 45 chr11 113878954 113879064 -34904408 + CT-rich Low_complexity Low_complexity 1 108 0 981 69 29 23 chr11 113879132 113879306 -34904166 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 1754 106 0 12 chr11 113879306 113879551 -34903921 - AluSq SINE Alu -36 277 36 2539 95 17 0 chr11 113879584 113879933 -34903539 + THE1A LTR MaLR 1 355 0 2110 90 0 0 chr11 113880077 113880381 -34903091 - AluSc SINE Alu 0 316 13 345 102 0 0 chr11 113881766 113881825 -34901647 + (CA)n Simple_repeat Simple_repeat 1 59 0 201 39 0 0 chr11 113882009 113882035 -34901437 + (A)n Simple_repeat Simple_repeat 1 26 0 30 69 0 0 chr11 113882188 113882246 -34901226 + AT_rich Low_complexity Low_complexity 1 58 0 1045 169 18 59 chr11 113882246 113882465 -34901007 - MER2 DNA MER2_type -135 210 1 25 0 0 0 chr11 113882815 113882840 -34900632 + AT_rich Low_complexity Low_complexity 1 25 0 2038 114 0 14 chr11 113882841 113883171 -34900301 - AluSx SINE Alu 0 326 1 188 33 0 33 chr11 113883394 113883424 -34900048 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 444 206 17 39 chr11 113884526 113884706 -34898766 + (TA)n Simple_repeat Simple_repeat 2 177 0 208 291 18 0 chr11 113884737 113884792 -34898680 - L3 LINE CR1 -151 1426 1371 312 70 0 0 chr11 113884923 113884966 -34898506 + (CA)n Simple_repeat Simple_repeat 1 43 0 1037 281 84 25 chr11 113885586 113885953 -34897519 + MER45B DNA AcHobo 329 717 -323 1411 134 14 6 chr11 113885976 113886815 -34896657 + L1PA16 LINE L1 5268 6157 -9 910 147 19 0 chr11 113886997 113887154 -34896318 - L1MD1 LINE L1 -11 6231 6072 301 321 29 36 chr11 113887166 113887303 -34896169 - L1MEc LINE L1 -2629 3586 3451 879 243 39 49 chr11 113887304 113887588 -34895884 + MER65C LTR ERV1 1 281 -180 204 316 130 81 chr11 113887760 113888045 -34895427 + L2 LINE L2 2897 3195 -77 2024 97 73 0 chr11 113889351 113889639 -34893833 + AluSc SINE Alu 1 309 0 21 36 0 0 chr11 113889677 113889705 -34893767 + AT_rich Low_complexity Low_complexity 1 28 0 10217 173 23 15 chr11 113889920 113892632 -34890840 - L1MA5 LINE L1 -6 6294 3558 1504 167 109 0 chr11 113892632 113892908 -34890564 - AluSx SINE Alu -6 306 1 10217 173 23 15 chr11 113892908 113893371 -34890101 - L1MA5 LINE L1 -2742 3558 3100 329 304 26 9 chr11 113893374 113893489 -34889983 - L1ME4a LINE L1 -280 5841 5725 273 319 17 34 chr11 113893966 113894085 -34889387 + MLT2E LTR ERVL 35 151 -477 30 0 0 0 chr11 113894463 113894493 -34888979 + AT_rich Low_complexity Low_complexity 1 30 0 1327 260 88 44 chr11 113894525 113895163 -34888309 - L1MC4 LINE L1 -137 7905 7240 1293 260 127 20 chr11 113895185 113895439 -34888033 - L1MC4 LINE L1 -958 7084 6859 1730 194 12 24 chr11 113895439 113895780 -34887692 - MER1B DNA MER1_type 0 337 1 1293 260 127 20 chr11 113895780 113896083 -34887389 - L1MC4 LINE L1 -1183 6859 6467 3799 251 111 38 chr11 113896569 113896663 -34886809 - L1MEc LINE L1 -4093 2303 2217 1939 127 0 0 chr11 113896663 113896930 -34886542 - AluSx SINE Alu -45 267 1 3799 251 111 38 chr11 113896930 113898770 -34884702 - L1MEc LINE L1 -4179 2217 228 700 344 21 14 chr11 113898872 113899151 -34884321 - L1MEc LINE L1 -6087 309 29 559 346 89 0 chr11 113899854 113900068 -34883404 + MIR SINE MIR 3 235 -27 351 260 125 0 chr11 113901660 113901764 -34881708 - MIR SINE MIR 0 262 146 21 57 0 0 chr11 113901764 113901799 -34881673 + AT_rich Low_complexity Low_complexity 1 35 0 219 365 61 40 chr11 113901799 113901947 -34881525 - MIR SINE MIR -105 157 7 22 0 0 0 chr11 113902118 113902140 -34881332 + AT_rich Low_complexity Low_complexity 1 22 0 334 299 106 30 chr11 113902185 113902580 -34880892 + L1ME4a LINE L1 5656 6080 -41 7214 131 19 1 chr11 113903357 113904486 -34878986 + L1P LINE L1 3796 4944 -1202 2010 129 3 29 chr11 113904486 113904797 -34878675 - AluSx SINE Alu -9 303 1 210 37 0 0 chr11 113906525 113906552 -34876920 + (TTG)n Simple_repeat Simple_repeat 2 28 0 1558 234 159 31 chr11 113907005 113907704 -34875768 - MER99 DNA DNA -1 827 2 21 36 0 0 chr11 113909233 113909261 -34874211 + AT_rich Low_complexity Low_complexity 1 28 0 259 232 18 0 chr11 113909668 113909724 -34873748 + MIR SINE MIR 80 136 -126 37 0 0 0 chr11 113909724 113909761 -34873711 + AT_rich Low_complexity Low_complexity 1 37 0 244 361 42 8 chr11 113909784 113909903 -34873569 + MIR SINE MIR 127 249 -13 582 306 48 0 chr11 113910770 113910956 -34872516 + MIR SINE MIR 60 254 -8 268 279 12 12 chr11 113911333 113911419 -34872053 - MIR3 SINE MIR -1 207 122 1914 166 42 15 chr11 113912860 113913263 -34870209 - L1MA8 LINE L1 -5 6286 5873 187 217 0 132 chr11 113913668 113913774 -34869698 + MIR SINE MIR 131 222 -40 968 220 125 19 chr11 113914012 113914380 -34869092 + LTR37A LTR ERV1 20 426 0 285 252 53 69 chr11 113915071 113915202 -34868270 - MIR SINE MIR -55 207 79 273 29 0 0 chr11 113915461 113915495 -34867977 + (GA)n Simple_repeat Simple_repeat 1 34 0 2917 207 24 8 chr11 113916161 113916755 -34866717 + L1MCa LINE L1 8 610 -5816 2750 188 76 18 chr11 113916787 113917445 -34866027 + L1MC1 LINE L1 482 1386 -5178 * 6528 243 68 40 chr11 113917443 113919093 -34864379 + L1MC1 LINE L1 2998 4601 -2150 3048 192 17 27 chr11 113919093 113919797 -34863675 + L1MB2 LINE L1 5472 6168 -3 6528 243 68 40 chr11 113919797 113920232 -34863240 + L1MC1 LINE L1 4601 5022 -1729 2111 82 7 36 chr11 113920232 113920537 -34862935 + AluY SINE Alu 1 296 -15 6528 243 68 40 chr11 113920537 113921626 -34861846 + L1MC1 LINE L1 5022 6261 -490 2854 119 9 2 chr11 113921636 113922064 -34861408 - L1PA13 LINE L1 -54 6109 5679 * 7831 180 23 4 chr11 113922049 113923549 -34859923 - L1PA13 LINE L1 -1200 4946 3418 208 299 78 13 chr11 113923823 113923900 -34859572 - L2 LINE L2 0 3313 3232 8487 202 67 10 chr11 113924513 113924860 -34858612 + L1MA9 LINE L1 3081 3407 -2813 743 21 32 0 chr11 113924860 113924955 -34858517 + (TTTTC)n Simple_repeat Simple_repeat 2 99 0 8487 202 67 10 chr11 113924955 113926861 -34856611 + L1MA9 LINE L1 3407 5470 -750 363 136 0 0 chr11 113926975 113927034 -34856438 + (TG)n Simple_repeat Simple_repeat 2 60 0 2477 164 26 14 chr11 113927092 113927591 -34855881 + L1MA9 LINE L1 5808 6312 0 299 382 53 16 chr11 113927627 113927873 -34855599 - L2 LINE L2 -798 2516 2262 273 200 0 0 chr11 113928677 113928727 -34854745 - L2 LINE L2 -2 3270 3221 185 0 40 0 chr11 113929475 113929500 -34853972 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 22 56 0 0 chr11 113930139 113930175 -34853297 + AT_rich Low_complexity Low_complexity 1 36 0 252 0 0 0 chr11 113930886 113930914 -34852558 + (CA)n Simple_repeat Simple_repeat 2 29 0 1094 229 79 13 chr11 113931497 113931812 -34851660 - MER44D DNA MER2_type 0 609 4 474 333 51 54 chr11 113932281 113932671 -34850801 - L2 LINE L2 0 3313 2925 361 229 9 95 chr11 113933035 113933140 -34850332 + MER21B LTR ERV1 12 107 -756 2561 229 113 43 chr11 113933219 113933813 -34849659 + MER21B LTR ERV1 19 681 -182 2340 136 19 8 chr11 113933813 113934182 -34849290 - THE1C LTR MaLR -2 373 1 2561 229 113 43 chr11 113934182 113934359 -34849113 + MER21B LTR ERV1 681 844 -19 568 313 125 47 chr11 113936202 113936650 -34846822 - L2 LINE L2 -681 2633 2151 1078 301 45 46 chr11 113936719 113937324 -34846148 + MLT2F LTR ERVL 6 663 0 493 290 51 0 chr11 113937421 113937559 -34845913 + LTR50 LTR ERVL 1 145 -650 413 308 169 44 chr11 113937811 113938201 -34845271 + L1MC/D LINE L1 5377 5815 -1993 653 266 128 39 chr11 113938218 113938500 -34844972 + MLT1J LTR MaLR 5 311 -200 25 51 0 0 chr11 113939652 113939691 -34843781 + AT_rich Low_complexity Low_complexity 1 39 0 2170 120 8 56 chr11 113939879 113940254 -34843218 + THE1B LTR MaLR 1 357 -7 192 97 0 0 chr11 113941190 113941221 -34842251 + (TA)n Simple_repeat Simple_repeat 2 32 0 309 315 189 29 chr11 113941552 113941901 -34841571 + L1MC/D LINE L1 5254 5658 -2150 3134 81 9 0 chr11 113941947 113942366 -34841106 + L1PA8 LINE L1 5735 6157 -15 1055 100 0 6 chr11 113942370 113942530 -34840942 + (GAAA)n Simple_repeat Simple_repeat 2 160 0 306 203 0 0 chr11 113942549 113942613 -34840859 + L1PBa LINE L1 2 65 -6798 1407 103 42 0 chr11 113942613 113942826 -34840646 + L1PB1 LINE L1 5930 6151 0 24 0 0 0 chr11 113943155 113943179 -34840293 + AT_rich Low_complexity Low_complexity 1 24 0 628 306 204 36 chr11 113944969 113946005 -34837467 + L2 LINE L2 1684 2893 -421 351 120 0 0 chr11 113946306 113946356 -34837116 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 557 178 8 0 chr11 113946357 113946475 -34836997 + GA-rich Low_complexity Low_complexity 2 120 0 222 37 0 0 chr11 113946477 113946504 -34836968 + (GGAA)n Simple_repeat Simple_repeat 1 27 0 275 299 114 6 chr11 113946732 113946899 -34836573 + MER5A DNA MER1_type 1 185 -4 699 224 0 0 chr11 113947791 113948018 -34835454 + (CA)n Simple_repeat Simple_repeat 1 227 0 225 94 0 0 chr11 113949334 113949366 -34834106 + (CA)n Simple_repeat Simple_repeat 2 33 0 214 321 178 35 chr11 113950501 113950816 -34832656 - L3 LINE CR1 -2 1575 1216 185 368 0 13 chr11 113950989 113951065 -34832407 - L3 LINE CR1 -312 1265 1191 1518 307 138 28 chr11 113951100 113952192 -34831280 + L2 LINE L2 1446 2658 -656 216 259 7 14 chr11 113952373 113952516 -34830956 + GA-rich Low_complexity Low_complexity 3 144 0 396 351 67 13 chr11 113952864 113953141 -34830331 + L2 LINE L2 2771 3061 -252 720 275 41 18 chr11 113953213 113953431 -34830041 + MER58A DNA MER1_type 2 224 0 706 292 26 38 chr11 113953669 113953936 -34829536 - L2 LINE L2 0 3313 3050 1460 183 26 42 chr11 113953937 113954060 -34829412 + AluSq SINE Alu 1 124 -189 495 0 0 0 chr11 113954060 113954115 -34829357 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 1460 183 26 42 chr11 113954115 113954303 -34829169 + AluSq SINE Alu 124 307 -6 719 268 22 6 chr11 113954750 113954929 -34828543 - MER5A DNA MER1_type -1 188 7 228 286 29 29 chr11 113954936 113955006 -34828466 - MIR3 SINE MIR -49 159 90 899 241 101 93 chr11 113956464 113956892 -34826580 + MLT1H LTR MaLR 117 547 -2 3124 208 31 22 chr11 113957532 113957556 -34825916 - L1MB3 LINE L1 -8 6175 6153 1946 103 16 26 chr11 113957556 113957867 -34825605 + AluY SINE Alu 1 308 -3 3124 208 31 22 chr11 113957867 113958531 -34824941 - L1MB3 LINE L1 -30 6153 5477 189 0 0 0 chr11 113958531 113958552 -34824920 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 3124 208 31 22 chr11 113958552 113958603 -34824869 - L1MB3 LINE L1 -706 5477 5428 837 338 37 55 chr11 113958932 113959672 -34823800 + L2 LINE L2 2589 3308 -5 252 59 0 0 chr11 113960288 113960322 -34823150 + (TG)n Simple_repeat Simple_repeat 2 35 0 1539 207 3 0 chr11 113961422 113961722 -34821750 - AluJb SINE Alu -6 306 6 269 266 172 64 chr11 113961919 113962122 -34821350 - L2 LINE L2 0 3313 3089 258 382 25 19 chr11 113963086 113963243 -34820229 - MIR3 SINE MIR -32 176 19 1010 205 19 71 chr11 113963278 113963600 -34819872 + L1MA10 LINE L1 6029 6333 -1 384 147 0 0 chr11 113964441 113964516 -34818956 + (CA)n Simple_repeat Simple_repeat 1 75 0 237 204 0 0 chr11 113964653 113964697 -34818775 - Alu SINE Alu -215 87 44 360 0 0 0 chr11 113965916 113965956 -34817516 + (CA)n Simple_repeat Simple_repeat 1 40 0 314 269 40 0 chr11 113967539 113967688 -34815784 - Charlie5 DNA MER1_type -28 2584 2430 * 317 186 0 57 chr11 113967686 113967756 -34815716 - Charlie5 DNA MER1_type -2542 70 5 199 309 43 11 chr11 113968093 113968187 -34815285 - MIR SINE MIR -26 236 140 197 129 89 32 chr11 113968189 113968313 -34815159 + (TTATA)n Simple_repeat Simple_repeat 4 134 0 2076 192 37 0 chr11 113968962 113969425 -34814047 + L1MA8 LINE L1 3990 4469 -1677 1070 196 5 16 chr11 113969436 113969630 -34813842 + AluJo SINE Alu 95 286 -26 4758 180 39 27 chr11 113969653 113970373 -34813099 + L1MA8 LINE L1 4457 5167 -1124 216 0 0 0 chr11 113970373 113970397 -34813075 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1929 135 25 0 chr11 113970400 113970682 -34812790 - AluSx SINE Alu -23 289 1 4758 180 39 27 chr11 113970682 113971779 -34811693 + L1MA8 LINE L1 5168 6279 -12 190 329 112 65 chr11 113971823 113972361 -34811111 + L2 LINE L2 2174 2736 -578 186 260 0 20 chr11 113972694 113972744 -34810728 + L2 LINE L2 3181 3229 -84 234 264 42 14 chr11 113974576 113974648 -34808824 - MIR3 SINE MIR -39 169 96 765 227 0 0 chr11 113977220 113977374 -34806098 - MER46A DNA MER2_type 0 236 83 22466 70 9 2 chr11 113977393 113981246 -34802226 - L1PA6 LINE L1 0 6154 2310 198 0 0 0 chr11 113981407 113981429 -34802043 + (A)n Simple_repeat Simple_repeat 1 22 0 1977 191 9 24 chr11 113981431 113981854 -34801618 + L1MA8 LINE L1 5549 5965 -326 301 354 114 34 chr11 113981930 113982489 -34800983 + L2 LINE L2 2163 2766 -548 190 339 0 18 chr11 113982773 113982829 -34800643 + L2 LINE L2 3007 3061 -211 2132 113 0 26 chr11 113982887 113983216 -34800256 - AluSx SINE Alu 0 312 1 184 174 0 87 chr11 113983257 113983303 -34800169 + L2 LINE L2 3179 3220 -93 264 158 53 0 chr11 113983445 113983502 -34799970 + LTR8A LTR ERV1 1 60 -667 19232 99 32 41 chr11 113983502 113986466 -34797006 + HUERS-P1 LTR ERV1 16 2952 -3311 10291 98 1 17 chr11 113986466 113987930 -34795542 + HUERS-P1 LTR ERV1 4823 6263 0 2736 202 16 67 chr11 113987930 113988658 -34794814 + LTR8 LTR ERV1 1 691 0 184 294 189 49 chr11 113988832 113989176 -34794296 - L2 LINE L2 -93 3220 2829 237 270 32 0 chr11 113990214 113990277 -34793195 - MIR3 SINE MIR -48 160 96 6233 212 16 41 chr11 113991405 113993626 -34789846 + L1P3 LINE L1 372 2555 -3906 4018 110 22 9 chr11 113993626 113994253 -34789219 + L1PA10 LINE L1 5532 6168 0 5307 138 106 30 chr11 113994846 113995012 -34788460 - MER4E-int LTR ERV1 -5699 1059 907 6478 119 39 16 chr11 113995012 113996058 -34787414 + MER11C LTR ERVK 1 1070 -1 5307 138 106 30 chr11 113996058 113996875 -34786597 - MER4E-int LTR ERV1 -5851 907 1 4839 136 20 7 chr11 113996875 113997620 -34785852 - MER4E LTR ERV1 0 779 25 235 380 55 30 chr11 113998710 113998947 -34784525 + L3 LINE CR1 566 808 -769 351 320 27 27 chr11 113999209 113999359 -34784113 + L3 LINE CR1 867 1016 -561 1966 126 3 23 chr11 113999608 113999910 -34783562 + AluSq SINE Alu 1 296 -17 1642 210 3 13 chr11 114000034 114000344 -34783128 + AluJo SINE Alu 1 307 -5 21 0 0 0 chr11 114000420 114000441 -34783031 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 114000450 114000471 -34783001 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr11 114000577 114000598 -34782874 + (A)n Simple_repeat Simple_repeat 1 21 0 500 315 78 78 chr11 114000972 114001356 -34782116 + MLT1J2 LTR MaLR 1 384 -66 211 364 40 0 chr11 114001513 114001612 -34781860 + L2 LINE L2 3196 3298 -15 186 71 0 0 chr11 114003316 114003344 -34780128 + (TAA)n Simple_repeat Simple_repeat 2 29 0 427 359 130 14 chr11 114003377 114003722 -34779750 + L2 LINE L2 2589 2973 -341 231 376 30 8 chr11 114004416 114004549 -34778923 - L2 LINE L2 -913 2401 2266 302 340 52 31 chr11 114006385 114006576 -34776896 - MLT1I LTR MaLR -172 237 43 320 339 46 0 chr11 114006577 114006686 -34776786 - MIR SINE MIR -92 170 57 1872 207 3 8 chr11 114006780 114007147 -34776325 + MLT1A1 LTR MaLR 1 365 0 8956 204 46 27 chr11 114008193 114011214 -34772258 + L1MA2 LINE L1 123 3541 -4024 6058 167 12 35 chr11 114011203 114013391 -34770081 + L1MA2 LINE L1 5567 7723 0 * 21 0 0 0 chr11 114013694 114013715 -34769757 + AT_rich Low_complexity Low_complexity 1 21 0 747 293 46 39 chr11 114014891 114015301 -34768171 + MLT1H LTR MaLR 132 544 -5 365 340 39 35 chr11 114015500 114015756 -34767716 - HAL1 LINE L1 -6 2501 2245 3308 194 23 15 chr11 114015973 114016711 -34766761 - L1MB3 LINE L1 -3 6180 5437 569 359 48 28 chr11 114017064 114017549 -34765923 + L2 LINE L2 2563 3054 -259 2089 142 18 9 chr11 114017613 114017945 -34765527 + MER61A LTR ERV1 1 335 -8 215 217 0 0 chr11 114018069 114018115 -34765357 + GA-rich Low_complexity Low_complexity 1 46 0 411 250 168 53 chr11 114019295 114019503 -34763969 - L2 LINE L2 0 3313 3082 180 77 0 0 chr11 114020215 114020241 -34763231 + (TTTTTG)n Simple_repeat Simple_repeat 1 26 0 207 342 53 0 chr11 114020452 114020528 -34762944 - MIR3 SINE MIR -31 177 98 1023 216 32 63 chr11 114020638 114020953 -34762519 + L1MA10 LINE L1 6028 6332 -2 2844 111 23 9 chr11 114021724 114022158 -34761314 - L1PA8 LINE L1 0 6172 5733 192 182 0 0 chr11 114022255 114022299 -34761173 + (CA)n Simple_repeat Simple_repeat 1 44 0 245 346 55 69 chr11 114023610 114024046 -34759426 + L2 LINE L2 2872 3301 -12 2039 102 31 7 chr11 114024063 114024357 -34759115 + AluSc SINE Alu 1 301 -8 195 42 0 0 chr11 114024576 114024600 -34758872 + (CA)n Simple_repeat Simple_repeat 2 25 0 1353 217 3 14 chr11 114025593 114025879 -34757593 + AluJo SINE Alu 6 288 -24 473 135 127 8 chr11 114026461 114026587 -34756885 - Charlie5 DNA MER1_type -42 2570 2430 26 64 0 0 chr11 114027276 114027323 -34756149 + AT_rich Low_complexity Low_complexity 1 47 0 30 27 0 0 chr11 114027708 114027745 -34755727 + AT_rich Low_complexity Low_complexity 1 37 0 399 89 0 0 chr11 114028015 114028071 -34755401 + (TG)n Simple_repeat Simple_repeat 2 57 0 236 358 11 0 chr11 114029002 114029097 -34754375 - L2 LINE L2 0 3272 3177 342 391 0 25 chr11 114029129 114029331 -34754141 - L2 LINE L2 -901 2413 2217 241 370 7 58 chr11 114029361 114029499 -34753973 - MIR SINE MIR -87 175 45 316 343 21 50 chr11 114030813 114031055 -34752417 - L2 LINE L2 -866 2448 2214 375 331 28 55 chr11 114031072 114031253 -34752219 - MIR SINE MIR -74 188 13 1032 156 0 0 chr11 114032389 114032402 -34751070 + (TA)n Simple_repeat Simple_repeat 1 193 0 1032 156 0 0 chr11 114032402 114032582 -34750890 + (TA)n Simple_repeat Simple_repeat 1 180 0 329 209 23 45 chr11 114033022 114033199 -34750273 + (TTA)n Simple_repeat Simple_repeat 3 175 0 203 340 30 0 chr11 114033218 114033318 -34750154 - MIR SINE MIR -26 236 134 5538 191 50 19 chr11 114033981 114036216 -34747256 + L1MA8 LINE L1 3990 6288 -3 21 0 0 0 chr11 114036216 114036237 -34747235 + AT_rich Low_complexity Low_complexity 1 21 0 337 351 98 41 chr11 114036263 114036796 -34746676 + L2 LINE L2 2174 2736 -578 289 390 80 21 chr11 114037350 114037724 -34745748 - L2 LINE L2 -4 3268 2873 21 0 0 0 chr11 114038424 114038445 -34745027 + AT_rich Low_complexity Low_complexity 1 21 0 42876 32 22 1 chr11 114038967 114044995 -34738477 + L1PA3 LINE L1 1 6155 0 196 336 87 19 chr11 114045058 114045162 -34738310 - MIR3 SINE MIR -48 160 50 3130 182 10 3 chr11 114046260 114046852 -34736620 - L1PA16 LINE L1 -2 6164 5569 850 193 0 41 chr11 114046853 114047071 -34736401 + L1 LINE L1 4705 4913 -1233 27 0 0 0 chr11 114048020 114048047 -34735425 + AT_rich Low_complexity Low_complexity 1 27 0 1160 208 4 0 chr11 114048586 114048817 -34734655 - MER46A DNA MER2_type -4 232 1 22 35 0 0 chr11 114050171 114050200 -34733272 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr11 114051036 114051058 -34732414 + AT_rich Low_complexity Low_complexity 1 22 0 25 75 0 0 chr11 114051152 114051205 -34732267 + AT_rich Low_complexity Low_complexity 1 53 0 444 332 120 5 chr11 114053410 114053618 -34729854 + MIR SINE MIR 20 251 -11 24 77 0 0 chr11 114054361 114054413 -34729059 + AT_rich Low_complexity Low_complexity 1 52 0 425 304 61 22 chr11 114054570 114054751 -34728721 + L3 LINE CR1 829 1016 -561 26 50 0 0 chr11 114054783 114054823 -34728649 + AT_rich Low_complexity Low_complexity 1 40 0 404 356 84 17 chr11 114055214 114055559 -34727913 - L2 LINE L2 -733 2581 2214 1396 228 3 7 chr11 114058277 114058584 -34724888 - AluJo SINE Alu -2 310 5 484 306 100 9 chr11 114058620 114058849 -34724623 + MIR SINE MIR 12 261 -1 301 284 198 9 chr11 114058953 114059069 -34724403 - L2 LINE L2 -2 3270 3133 2054 152 22 19 chr11 114059077 114059440 -34724032 + THE1B LTR MaLR 1 364 0 9588 124 31 38 chr11 114059440 114061032 -34722440 + THE1B-int LTR MaLR 1 1580 0 2403 119 19 14 chr11 114061032 114061394 -34722078 + THE1B LTR MaLR 1 364 0 1763 127 81 3 chr11 114061851 114062135 -34721337 - AluSg SINE Alu -4 306 1 1080 267 35 42 chr11 114062513 114062944 -34720528 + L1ME2 LINE L1 5722 6149 -15 297 355 71 7 chr11 114063553 114063694 -34719778 + MIR SINE MIR 23 172 -90 341 310 42 21 chr11 114065036 114065178 -34718294 + L3 LINE CR1 872 1016 -561 21 0 0 0 chr11 114065210 114065231 -34718241 + AT_rich Low_complexity Low_complexity 1 21 0 406 389 36 12 chr11 114065672 114066001 -34717471 - L2 LINE L2 -782 2532 2196 1472 221 0 3 chr11 114068471 114068765 -34714707 - AluJb SINE Alu -7 305 13 419 270 117 45 chr11 114068804 114069026 -34714446 + MIR SINE MIR 1 238 -24 1046 265 45 42 chr11 114070148 114070575 -34712897 + L1ME2 LINE L1 5722 6149 -15 330 345 63 7 chr11 114071209 114071351 -34712121 + MIR SINE MIR 23 172 -90 183 333 0 0 chr11 114071859 114071916 -34711556 - MIR SINE MIR -16 246 190 685 311 64 64 chr11 114072455 114072770 -34710702 + L1MEd LINE L1 709 1026 -5093 12415 181 26 43 chr11 114072770 114072834 -34710638 - Tigger2 DNA MER2_type 0 2718 2654 2256 98 0 0 chr11 114072834 114073141 -34710331 + AluY SINE Alu 1 307 -4 12415 181 26 43 chr11 114073141 114075837 -34707635 - Tigger2 DNA MER2_type -64 2654 4 685 311 64 64 chr11 114075837 114076070 -34707402 + L1MEd LINE L1 1025 1257 -4862 343 227 11 34 chr11 114076093 114076115 -34707357 - MIR SINE MIR -86 176 155 834 268 59 41 chr11 114076115 114076574 -34706898 + MLT1C LTR MaLR 1 467 0 343 227 11 34 chr11 114076574 114076639 -34706833 - MIR SINE MIR -107 155 91 32 26 0 0 chr11 114077046 114077085 -34706387 + AT_rich Low_complexity Low_complexity 1 39 0 249 320 55 31 chr11 114077847 114077975 -34705497 + LTR16C LTR ERVL 316 446 -45 180 234 0 0 chr11 114078014 114078061 -34705411 + (CAT)n Simple_repeat Simple_repeat 3 49 0 21 57 0 0 chr11 114078733 114078768 -34704704 + AT_rich Low_complexity Low_complexity 1 35 0 1344 222 4 0 chr11 114079101 114079371 -34704101 + AluJo SINE Alu 6 276 -36 335 213 140 0 chr11 114079974 114080110 -34703362 - Charlie5 DNA MER1_type 0 2623 2469 251 171 0 0 chr11 114080112 114080153 -34703319 - Charlie5 DNA MER1_type -2546 66 26 222 105 0 0 chr11 114081160 114081198 -34702274 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 279 130 0 0 chr11 114081205 114081259 -34702213 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 23 33 0 0 chr11 114081333 114081363 -34702109 + AT_rich Low_complexity Low_complexity 1 30 0 235 92 77 0 chr11 114081645 114081710 -34701762 + (TA)n Simple_repeat Simple_repeat 2 71 0 200 277 0 0 chr11 114082365 114082412 -34701060 - L2 LINE L2 0 3313 3267 379 343 15 34 chr11 114082492 114082696 -34700776 - L2 LINE L2 -901 2413 2214 3055 180 8 8 chr11 114083466 114084066 -34699406 - L1PA16 LINE L1 0 6166 5567 737 224 19 29 chr11 114084066 114084276 -34699196 + L1P LINE L1 4706 4913 -1233 26 30 0 0 chr11 114085263 114085296 -34698176 + AT_rich Low_complexity Low_complexity 1 33 0 978 244 4 4 chr11 114085675 114085909 -34697563 - MER46A DNA MER2_type -2 234 1 222 218 0 0 chr11 114089138 114089193 -34694279 + A-rich Low_complexity Low_complexity 1 55 0 334 361 0 0 chr11 114089812 114089931 -34693541 + MIR SINE MIR 24 142 -120 332 341 59 7 chr11 114090974 114091109 -34692363 + L3 LINE CR1 844 985 -592 397 364 41 25 chr11 114091637 114091953 -34691519 - L2 LINE L2 -782 2532 2212 30 0 0 0 chr11 114092450 114092480 -34690992 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr11 114094314 114094343 -34689129 + AT_rich Low_complexity Low_complexity 1 29 0 1331 226 7 3 chr11 114094709 114094997 -34688475 - AluJo SINE Alu -19 293 5 536 311 110 4 chr11 114095031 114095259 -34688213 + MIR SINE MIR 10 261 -1 254 267 198 9 chr11 114095360 114095476 -34687996 - L2 LINE L2 -2 3270 3133 818 258 40 40 chr11 114096354 114096676 -34686796 + L1ME2 LINE L1 5722 6043 -121 729 257 40 33 chr11 114097055 114097327 -34686145 + L1ME2 LINE L1 5722 5995 -169 5422 91 14 35 chr11 114097327 114098132 -34685340 + HUERS-P1 LTR ERV1 2165 2952 -3311 9382 109 3 41 chr11 114098132 114099630 -34683842 + HUERS-P1 LTR ERV1 4823 6263 0 2818 192 19 70 chr11 114099630 114100358 -34683114 + LTR8 LTR ERV1 1 691 0 1933 225 56 8 chr11 114100589 114101086 -34682386 + L1PA11 LINE L1 4402 4922 -1224 * 3122 153 19 162 chr11 114101085 114101462 -34682010 + L1PA11 LINE L1 5209 5638 -536 2837 124 9 0 chr11 114101462 114101898 -34681574 - L1PA10 LINE L1 -16 6152 5713 3122 153 19 162 chr11 114101898 114102647 -34680825 + L1PA11 LINE L1 5638 6173 -1 7830 188 22 16 chr11 114102659 114104470 -34679002 + L1MA3 LINE L1 3609 5433 -743 536 187 8 8 chr11 114104467 114104590 -34678882 + L1MA3 LINE L1 5919 6041 -264 * 905 215 28 0 chr11 114104611 114104825 -34678647 + L1PA16 LINE L1 5938 6157 -9 1062 226 0 0 chr11 114106727 114106944 -34676528 - MER46A DNA MER2_type -4 232 16 25 0 0 0 chr11 114108262 114108287 -34675185 + AT_rich Low_complexity Low_complexity 1 25 0 202 227 0 0 chr11 114108838 114108882 -34674590 + A-rich Low_complexity Low_complexity 1 44 0 9131 237 47 14 chr11 114108994 114112736 -34670736 + L1M2a LINE L1 136 4005 -3162 603 246 131 11 chr11 114112751 114112926 -34670546 + AluJo SINE Alu 96 291 -21 3685 218 26 17 chr11 114112927 114113922 -34669550 + L1M2a LINE L1 4055 5058 -2109 465 350 115 0 chr11 114114652 114114852 -34668620 + MIR SINE MIR 24 246 -16 213 394 37 19 chr11 114115370 114115586 -34667886 + L3 LINE CR1 591 810 -767 426 286 75 19 chr11 114115806 114115967 -34667505 + L3 LINE CR1 844 1013 -564 386 333 57 28 chr11 114116484 114116766 -34666706 - L2 LINE L2 -782 2532 2243 1316 229 7 3 chr11 114119545 114119833 -34663639 - AluJo SINE Alu -19 293 5 536 311 110 4 chr11 114119867 114120095 -34663377 + MIR SINE MIR 10 261 -1 254 267 198 9 chr11 114120196 114120312 -34663160 - L2 LINE L2 -2 3270 3133 876 276 44 51 chr11 114121202 114121633 -34661839 + L1ME2 LINE L1 5722 6149 -15 8934 150 40 24 chr11 114121688 114123170 -34660302 + HUERS-P1 LTR ERV1 1446 2952 -3311 9760 102 4 25 chr11 114123170 114124642 -34658830 + HUERS-P1 LTR ERV1 4823 6263 0 2775 196 18 69 chr11 114124642 114125370 -34658102 + LTR8 LTR ERV1 1 691 0 2091 117 0 7 chr11 114125485 114125776 -34657696 - AluSq SINE Alu -24 289 1 26 30 0 0 chr11 114126434 114126467 -34657005 + AT_rich Low_complexity Low_complexity 1 33 0 198 318 32 0 chr11 114127237 114127300 -34656172 - MIR3 SINE MIR -48 160 96 7386 211 21 45 chr11 114128729 114131321 -34652151 + L1PA11 LINE L1 10 2549 -3912 4257 103 9 12 chr11 114131321 114131960 -34651512 + L1PA10 LINE L1 5532 6168 0 996 206 5 5 chr11 114133072 114133261 -34650211 - MER46A DNA MER2_type -2 234 46 3261 230 162 10 chr11 114133262 114134291 -34649181 + L1PA11 LINE L1 4052 5237 -1224 3122 153 19 162 chr11 114134290 114134667 -34648805 + L1PA11 LINE L1 5524 5953 -536 * 2807 124 9 2 chr11 114134667 114135104 -34648368 - L1PA10 LINE L1 -16 6152 5713 3122 153 19 162 chr11 114135104 114135853 -34647619 + L1PA11 LINE L1 5953 6488 -1 7713 194 27 15 chr11 114135865 114137662 -34645810 + L1MA3 LINE L1 3609 5430 -743 640 176 0 8 chr11 114137661 114137792 -34645680 + L1MA3 LINE L1 5919 6048 -257 * 1050 188 9 0 chr11 114137803 114138021 -34645451 + L1PA16 LINE L1 5938 6157 -9 1128 217 0 0 chr11 114139944 114140174 -34643298 - MER46A DNA MER2_type -4 232 3 21 36 0 0 chr11 114142519 114142547 -34640925 + AT_rich Low_complexity Low_complexity 1 28 0 4496 190 23 21 chr11 114144804 114145997 -34637475 + L1MA3 LINE L1 4236 5433 -743 536 187 8 8 chr11 114145994 114146117 -34637355 + L1MA3 LINE L1 5919 6041 -264 * 905 215 28 0 chr11 114146138 114146352 -34637120 + L1PA16 LINE L1 5938 6157 -9 1780 164 27 24 chr11 114146765 114147101 -34636371 - THE1C LTR MaLR -38 337 1 9115 130 18 65 chr11 114147101 114148758 -34634714 - THE1C-int LTR MaLR 0 1580 1 689 141 42 42 chr11 114148758 114148900 -34634572 - THE1C LTR MaLR 0 375 234 489 256 63 0 chr11 114148918 114149067 -34634405 - L1ME LINE L1 -635 5535 5376 23 33 0 0 chr11 114149137 114149167 -34634305 + AT_rich Low_complexity Low_complexity 1 30 0 2089 43 8 0 chr11 114149766 114150024 -34633448 - L1PA5 LINE L1 -7 6147 5888 269 336 106 34 chr11 114150026 114150234 -34633238 + MLT1J2 LTR MaLR 175 397 -53 230 415 0 0 chr11 114150332 114150450 -34633022 + L2 LINE L2 3196 3313 0 874 113 0 0 chr11 114150464 114150601 -34632871 + AluSc SINE Alu 166 302 0 437 331 78 7 chr11 114150724 114151017 -34632455 - L2 LINE L2 -816 2498 2185 313 250 5 156 chr11 114151880 114151973 -34631499 - L2 LINE L2 -10 3303 3198 1880 99 28 0 chr11 114151973 114152225 -34631247 + AluSq SINE Alu 21 279 -34 231 36 0 0 chr11 114152226 114152254 -34631218 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 313 250 5 156 chr11 114152254 114152370 -34631102 - L2 LINE L2 -114 3199 3124 206 227 301 49 chr11 114152432 114152595 -34630877 + MIR SINE MIR 59 262 0 387 238 99 20 chr11 114153574 114153725 -34629747 - MIR SINE MIR -34 228 66 2049 130 21 35 chr11 114153811 114154150 -34629322 - THE1B LTR MaLR -30 334 1 3641 181 20 8 chr11 114157316 114158046 -34625426 - L1MB3 LINE L1 0 6183 5445 568 311 123 5 chr11 114158198 114158417 -34625055 + MIR SINE MIR 1 245 -17 441 274 65 38 chr11 114158475 114158661 -34624811 - L2 LINE L2 -8 3305 3115 21 36 0 0 chr11 114159743 114159771 -34623701 + AT_rich Low_complexity Low_complexity 1 28 0 190 310 91 53 chr11 114160122 114160309 -34623163 + MIR SINE MIR 39 232 -30 180 259 35 35 chr11 114160898 114160956 -34622516 - MIR SINE MIR -62 146 89 890 199 77 14 chr11 114161126 114161347 -34622125 - L1PA16 LINE L1 -4 6162 5928 2356 194 71 4 chr11 114161388 114161568 -34621904 + L1PB4 LINE L1 5584 5750 -406 360 0 0 0 chr11 114161568 114161608 -34621864 + (TA)n Simple_repeat Simple_repeat 2 41 0 2356 194 71 4 chr11 114161608 114161962 -34621510 + L1PB4 LINE L1 5750 6154 -2 22 0 0 0 chr11 114161962 114161984 -34621488 + AT_rich Low_complexity Low_complexity 1 22 0 496 256 93 49 chr11 114162629 114162875 -34620597 - L1ME2 LINE L1 -9 6155 5899 715 256 122 0 chr11 114162888 114163126 -34620346 - L1MEc LINE L1 -6095 301 35 2110 126 3 3 chr11 114163560 114163869 -34619603 + AluSx SINE Alu 1 309 -3 215 250 65 65 chr11 114163869 114163961 -34619511 + L2 LINE L2 3172 3263 -9 31 0 0 0 chr11 114164979 114165010 -34618462 + AT_rich Low_complexity Low_complexity 1 31 0 788 271 21 0 chr11 114165191 114165383 -34618089 - MIR SINE MIR -66 196 1 388 301 40 23 chr11 114165983 114166156 -34617316 - MIR SINE MIR -11 251 76 258 302 81 20 chr11 114166326 114166475 -34616997 + L2 LINE L2 3119 3276 -37 208 328 15 52 chr11 114166692 114166826 -34616646 - L2 LINE L2 -1 3312 3184 342 302 58 37 chr11 114167031 114167220 -34616252 - L2 LINE L2 -1 3312 3120 2033 207 82 7 chr11 114167240 114167704 -34615768 - MLT1D LTR MaLR -4 501 3 813 269 72 11 chr11 114168168 114168501 -34614971 + L1MC4 LINE L1 6611 7002 -847 343 293 26 60 chr11 114168646 114168878 -34614594 + L1MC5 LINE L1 7010 7233 -728 272 242 48 10 chr11 114168955 114169077 -34614395 + L1MC4a LINE L1 7261 7415 -393 618 130 0 0 chr11 114169081 114169173 -34614299 + AluS SINE Alu 1 92 -221 2602 153 79 11 chr11 114169179 114169648 -34613824 + Tigger3(Golem) DNA MER2_type 2527 3027 -2 271 263 32 0 chr11 114169649 114169744 -34613728 + L1MC3 LINE L1 7015 7112 -673 * 842 207 113 0 chr11 114169743 114169946 -34613526 + L1MD3 LINE L1 7532 7757 -238 23 0 0 0 chr11 114170215 114170238 -34613234 + AT_rich Low_complexity Low_complexity 1 23 0 2360 66 3 7 chr11 114170919 114171222 -34612250 + AluY SINE Alu 1 302 -9 186 43 0 0 chr11 114171262 114171285 -34612187 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 999 85 0 0 chr11 114171386 114171515 -34611957 - AluSg/x SINE Alu -42 268 140 21 0 0 0 chr11 114171983 114172004 -34611468 + AT_rich Low_complexity Low_complexity 1 21 0 1506 121 5 0 chr11 114172512 114172718 -34610754 - AluSx SINE Alu -99 213 7 22 56 0 0 chr11 114173890 114173926 -34609546 + AT_rich Low_complexity Low_complexity 1 36 0 762 201 24 24 chr11 114174091 114174260 -34609212 - FRAM SINE Alu -7 169 1 263 333 109 6 chr11 114174283 114174457 -34609015 - L3 LINE CR1 -219 1358 1167 22 0 0 0 chr11 114174900 114174922 -34608550 + AT_rich Low_complexity Low_complexity 1 22 0 237 310 39 23 chr11 114175153 114175282 -34608190 - MLT1J2 LTR MaLR -42 408 278 * 509 300 59 59 chr11 114175281 114175588 -34607884 - MLT1J LTR MaLR -204 307 1 21 0 0 0 chr11 114176119 114176140 -34607332 + AT_rich Low_complexity Low_complexity 1 21 0 2241 165 10 5 chr11 114176152 114176553 -34606919 - L1PA16 LINE L1 0 6166 5764 600 312 18 18 chr11 114177354 114177524 -34605948 - MLT1I LTR MaLR -129 280 111 582 312 50 23 chr11 114177700 114177921 -34605551 - MIR SINE MIR -18 244 18 1738 127 0 4 chr11 114178860 114179294 -34604178 + AluSx SINE Alu 46 478 0 1295 55 6 11 chr11 114179113 114179368 -34604104 + (GAAA)n Simple_repeat Simple_repeat 1 254 0 816 151 96 0 chr11 114182111 114182257 -34601215 - FRAM SINE Alu -17 159 1 2164 139 0 0 chr11 114182300 114182603 -34600869 - AluSq SINE Alu -10 303 1 213 121 0 0 chr11 114182706 114182739 -34600733 + (CATATA)n Simple_repeat Simple_repeat 3 35 0 326 322 0 0 chr11 114182739 114182829 -34600643 + L1MC4 LINE L1 6614 6703 -1339 * 380 309 43 7 chr11 114182749 114182888 -34600584 - L1MC4 LINE L1 -1339 6703 6560 211 161 16 48 chr11 114184169 114184231 -34599241 + (TATAA)n Simple_repeat Simple_repeat 4 63 0 189 238 24 0 chr11 114185342 114185384 -34598088 + L2 LINE L2 3268 3310 -3 1996 109 7 0 chr11 114186127 114186403 -34597069 - AluSq SINE Alu -3 310 33 2421 119 0 8 chr11 114186503 114186873 -34596599 - L1PB1 LINE L1 0 6151 5785 250 185 12 37 chr11 114186874 114186955 -34596517 + (TA)n Simple_repeat Simple_repeat 2 80 0 3429 110 13 8 chr11 114186959 114187488 -34595984 - L1PB1 LINE L1 -360 5791 5260 22 0 0 0 chr11 114187580 114187602 -34595870 + AT_rich Low_complexity Low_complexity 1 22 0 4976 166 19 3 chr11 114187756 114188880 -34594592 - L1PA16 LINE L1 -5 6161 5023 403 62 16 16 chr11 114188912 114188976 -34594496 + (GA)n Simple_repeat Simple_repeat 1 64 0 25 0 0 0 chr11 114189139 114189164 -34594308 + AT_rich Low_complexity Low_complexity 1 25 0 226 70 0 47 chr11 114189221 114189264 -34594208 + (TTTTG)n Simple_repeat Simple_repeat 3 43 0 3147 233 70 42 chr11 114189318 114190471 -34593001 - L1M4 LINE L1 -840 5306 4121 41 21 0 0 chr11 114190891 114190939 -34592533 + AT_rich Low_complexity Low_complexity 1 48 0 2123 176 20 26 chr11 114191020 114191479 -34591993 + L1MC1 LINE L1 5874 6329 -4 23 33 0 0 chr11 114191540 114191570 -34591902 + AT_rich Low_complexity Low_complexity 1 30 0 717 238 136 47 chr11 114192492 114192853 -34590619 - L1MD2 LINE L1 -5 6354 5962 1947 234 39 74 chr11 114192891 114193472 -34590000 - L1MD2 LINE L1 -712 5647 5047 1586 147 15 38 chr11 114193472 114193776 -34589696 - AluSg SINE Alu 0 319 22 1947 234 39 74 chr11 114193776 114193897 -34589575 - L1MD2 LINE L1 -1312 5047 4923 267 114 0 0 chr11 114193897 114193941 -34589531 + (TATG)n Simple_repeat Simple_repeat 1 44 0 1947 234 39 74 chr11 114193941 114194582 -34588890 - L1MD2 LINE L1 -1436 4923 4356 1730 170 128 10 chr11 114194598 114194981 -34588491 - MSTA LTR MaLR 0 428 1 22 35 0 0 chr11 114195400 114195429 -34588043 + AT_rich Low_complexity Low_complexity 1 29 0 2499 46 0 7 chr11 114195484 114195789 -34587683 + AluY SINE Alu 1 303 -8 25 75 0 0 chr11 114196176 114196229 -34587243 + AT_rich Low_complexity Low_complexity 1 53 0 29 0 0 0 chr11 114196461 114196490 -34586982 + AT_rich Low_complexity Low_complexity 1 29 0 326 336 30 82 chr11 114197833 114198020 -34585452 - MIR SINE MIR -30 232 58 2726 13 0 0 chr11 114198020 114198327 -34585145 + AluYa5 SINE Alu 1 307 -4 326 336 30 82 chr11 114198327 114198371 -34585101 - MIR SINE MIR -204 58 13 27 29 0 0 chr11 114198686 114198720 -34584752 + AT_rich Low_complexity Low_complexity 1 34 0 216 226 75 0 chr11 114200137 114200190 -34583282 + L2 LINE L2 3256 3312 -1 443 220 17 51 chr11 114200924 114201042 -34582430 + MLT1C LTR MaLR 12 125 -380 824 240 77 20 chr11 114201078 114201324 -34582148 + MLT1C LTR MaLR 206 465 -2 234 0 0 0 chr11 114201461 114201487 -34581985 + (CA)n Simple_repeat Simple_repeat 2 27 0 2086 110 3 7 chr11 114201995 114202316 -34581156 + AluSg1 SINE Alu 1 309 0 197 377 0 13 chr11 114202892 114202969 -34580503 - MIR3 SINE MIR -32 176 101 429 162 0 0 chr11 114203220 114203288 -34580184 + L1PA15-16 LINE L1 2083 2150 -4699 1211 119 238 0 chr11 114203311 114203513 -34579959 - AluSq SINE Alu -63 250 1 7016 272 31 34 chr11 114203515 114205625 -34577847 + L1PA15-16 LINE L1 2138 4241 -2608 1591 171 33 4 chr11 114205625 114205923 -34577549 - AluSx SINE Alu 0 306 1 7016 272 31 34 chr11 114205923 114206425 -34577047 + L1PA15-16 LINE L1 4241 4743 -2106 511 126 74 0 chr11 114206431 114206526 -34576946 + L1PA16 LINE L1 6061 6162 -4 233 321 136 34 chr11 114207157 114207540 -34575932 - L2 LINE L2 -1026 2288 1867 1763 290 134 57 chr11 114207589 114208263 -34575209 + HAL1 LINE L1 10 630 -1877 346 172 0 23 chr11 114208263 114208350 -34575122 + L1PA13 LINE L1 6078 6162 -1 1763 290 134 57 chr11 114208350 114208792 -34574680 + HAL1 LINE L1 630 1036 -1471 180 0 0 0 chr11 114208792 114208812 -34574660 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1763 290 134 57 chr11 114208812 114209460 -34574012 + HAL1 LINE L1 1036 1912 -595 279 290 14 43 chr11 114209540 114209678 -34573794 + HAL1 LINE L1 2212 2345 -162 389 331 0 0 chr11 114210003 114210139 -34573333 + MLT1J LTR MaLR 4 139 -372 911 239 80 74 chr11 114210166 114210564 -34572908 + MLT2B1 LTR ERVL 1 400 -64 243 0 0 0 chr11 114210569 114210596 -34572876 + (TG)n Simple_repeat Simple_repeat 2 28 0 298 186 58 32 chr11 114210596 114210814 -34572658 + (TATAA)n Simple_repeat Simple_repeat 1 223 0 2114 112 3 19 chr11 114210874 114211188 -34572284 + AluSc SINE Alu 1 309 0 33 43 0 0 chr11 114211357 114211404 -34572068 + AT_rich Low_complexity Low_complexity 1 47 0 2017 252 59 21 chr11 114212232 114212905 -34570567 + L1MC4 LINE L1 6895 7656 -386 1964 155 36 28 chr11 114212905 114213266 -34570206 - THE1B LTR MaLR 0 364 1 2017 252 59 21 chr11 114213266 114213477 -34569995 + L1MC4 LINE L1 7656 7857 -185 369 335 86 30 chr11 114213780 114214013 -34569459 + MIR SINE MIR 5 250 -12 28 48 0 0 chr11 114215319 114215361 -34568111 + AT_rich Low_complexity Low_complexity 1 42 0 2219 108 0 0 chr11 114215954 114216261 -34567211 + AluSg SINE Alu 1 307 -3 3083 92 24 19 chr11 114216485 114216813 -34566659 - L1PA14 LINE L1 -1 6160 5828 1899 110 11 0 chr11 114216813 114217077 -34566395 - AluSc SINE Alu -42 267 1 3083 92 24 19 chr11 114217077 114217213 -34566259 - L1PA14 LINE L1 -333 5828 5694 333 71 0 11 chr11 114217216 114217271 -34566201 + L1PA14 LINE L1 5626 5664 -497 217 325 108 0 chr11 114217387 114217470 -34566002 - MIR SINE MIR -163 99 8 268 314 11 30 chr11 114217548 114217649 -34565823 + MIR SINE MIR 51 150 -58 486 0 0 0 chr11 114217649 114217703 -34565769 + (TA)n Simple_repeat Simple_repeat 1 54 0 180 158 0 0 chr11 114217703 114217741 -34565731 + (CA)n Simple_repeat Simple_repeat 1 38 0 268 311 11 29 chr11 114218399 114218501 -34564971 + MIR SINE MIR 51 151 -57 531 132 0 0 chr11 114218501 114218592 -34564880 + (TA)n Simple_repeat Simple_repeat 2 92 0 21 0 0 0 chr11 114218629 114218650 -34564822 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr11 114219632 114219654 -34563818 + AT_rich Low_complexity Low_complexity 1 22 0 337 224 37 103 chr11 114220204 114220311 -34563161 - MIR3 SINE MIR -34 174 75 21 0 0 0 chr11 114220316 114220337 -34563135 + AT_rich Low_complexity Low_complexity 1 21 0 371 236 66 9 chr11 114221878 114221984 -34561488 - MLT1I LTR MaLR -1 408 297 24 32 0 0 chr11 114223073 114223104 -34560368 + AT_rich Low_complexity Low_complexity 1 31 0 2483 65 0 0 chr11 114223146 114223456 -34560016 - AluY SINE Alu -1 310 1 21 0 0 0 chr11 114223746 114223767 -34559705 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 114223937 114223965 -34559507 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr11 114224546 114224577 -34558895 + AT_rich Low_complexity Low_complexity 1 31 0 218 31 0 31 chr11 114224786 114224818 -34558654 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 402 333 84 55 chr11 114224818 114225295 -34558177 - MLT1K LTR MaLR -55 533 43 406 288 142 28 chr11 114225927 114226215 -34557257 - HERVL LTR ERVL -631 5023 4703 696 355 62 14 chr11 114226564 114227083 -34556389 - HERVL LTR ERVL -1454 4310 3767 1909 204 124 24 chr11 114227325 114227732 -34555740 + MLT2B1 LTR ERVL 8 373 -147 204 40 0 0 chr11 114227732 114227757 -34555715 + (TC)n Simple_repeat Simple_repeat 2 26 0 456 19 0 0 chr11 114227760 114227813 -34555659 + (TG)n Simple_repeat Simple_repeat 2 54 0 1909 204 124 24 chr11 114227813 114227867 -34555605 + MLT2B1 LTR ERVL 374 520 0 215 359 39 39 chr11 114228145 114228248 -34555224 + L2 LINE L2 3203 3305 -8 274 321 0 0 chr11 114229756 114229840 -34553632 + Charlie7 DNA MER1_type 1 84 -2528 27 81 0 0 chr11 114229849 114229911 -34553561 + AT_rich Low_complexity Low_complexity 1 62 0 277 26 0 0 chr11 114229911 114229949 -34553523 - L1PB3 LINE L1 -2 6152 6115 309 247 59 77 chr11 114229956 114230126 -34553346 - HAL1 LINE L1 -4 2503 2337 441 242 47 0 chr11 114231017 114231145 -34552327 + L1MC1 LINE L1 4549 4682 -1464 1036 283 86 12 chr11 114231200 114231539 -34551933 - MLT1A1 LTR MaLR 0 365 2 4250 178 69 10 chr11 114231546 114232412 -34551060 + L1MC1 LINE L1 5410 6326 -7 237 319 11 11 chr11 114232792 114232886 -34550586 + MIR3 SINE MIR 92 185 -23 1147 104 21 26 chr11 114233486 114233679 -34549793 + L1PA10 LINE L1 5974 6165 -3 184 120 0 0 chr11 114233955 114233980 -34549492 - L2 LINE L2 -26 3246 3222 476 290 143 23 chr11 114234629 114234846 -34548626 + MIR SINE MIR 2 244 -18 340 354 9 9 chr11 114235146 114235259 -34548213 + L2 LINE L2 3201 3313 0 391 243 68 65 chr11 114235661 114235866 -34547606 + MIR SINE MIR 46 250 -12 2660 217 64 38 chr11 114236326 114237294 -34546178 + MER45B DNA AcHobo 2 1040 0 2800 136 5 0 chr11 114237336 114237762 -34545710 - MSTA LTR MaLR 0 428 1 1532 158 108 0 chr11 114237782 114238061 -34545411 + AluSg SINE Alu 1 309 -1 195 42 0 0 chr11 114238367 114238391 -34545081 + (A)n Simple_repeat Simple_repeat 1 24 0 268 321 23 38 chr11 114239058 114239189 -34544283 - MIR SINE MIR -28 234 106 21 0 0 0 chr11 114239426 114239447 -34544025 + AT_rich Low_complexity Low_complexity 1 21 0 267 331 63 10 chr11 114240018 114240317 -34543155 - L1 LINE L1 -1096 5050 4736 806 213 6 12 chr11 114240928 114241092 -34542380 + FRAM SINE Alu 1 154 -22 231 114 0 0 chr11 114241231 114241266 -34542206 + (TA)n Simple_repeat Simple_repeat 2 36 0 228 329 0 47 chr11 114241413 114241498 -34541974 + MLT1K LTR MaLR 214 294 -294 325 148 0 19 chr11 114242036 114242090 -34541382 - MER63 DNA MER1_type -311 749 697 228 268 24 12 chr11 114242135 114242217 -34541255 + MIR SINE MIR 180 262 0 256 319 86 66 chr11 114242347 114242801 -34540671 - LTR16B LTR ERVL -1 463 1 240 281 62 8 chr11 114243678 114243806 -34539666 + MER103 DNA DNA 8 142 -24 347 250 153 66 chr11 114246606 114246802 -34536670 - MIR SINE MIR -1 261 49 221 361 50 50 chr11 114248351 114248531 -34534941 + L2 LINE L2 2903 3082 -190 277 332 81 43 chr11 114248566 114248777 -34534695 + MIR SINE MIR 8 226 -36 341 213 0 0 chr11 114249575 114249636 -34533836 + AluJ/FLAM SINE Alu 5 65 -237 223 341 85 54 chr11 114249757 114249980 -34533492 + MIR SINE MIR 20 249 -13 270 0 0 0 chr11 114251527 114251557 -34531915 + (CA)n Simple_repeat Simple_repeat 1 30 0 27 0 0 0 chr11 114251775 114251802 -34531670 + AT_rich Low_complexity Low_complexity 1 27 0 33 0 0 0 chr11 114251917 114251950 -34531522 + AT_rich Low_complexity Low_complexity 1 33 0 635 299 85 5 chr11 114252003 114252214 -34531258 - MIR SINE MIR -34 228 1 207 342 120 17 chr11 114252294 114252411 -34531061 - L2 LINE L2 -228 3044 2916 227 294 0 0 chr11 114252639 114252690 -34530782 + MIR SINE MIR 19 69 -193 237 282 14 14 chr11 114252769 114252840 -34530632 + MIR SINE MIR 82 152 -110 330 371 53 12 chr11 114252916 114253086 -34530386 - L2 LINE L2 -345 2969 2793 917 240 11 19 chr11 114253141 114253412 -34530060 + L1MB7 LINE L1 2665 2933 -3213 5715 193 22 12 chr11 114253412 114255466 -34528006 + L1PA16 LINE L1 3957 6024 -142 2027 52 0 22 chr11 114255906 114256173 -34527299 - L1PA7 LINE L1 0 6154 5894 3708 213 75 4 chr11 114256173 114257228 -34526244 + L1MB7 LINE L1 4905 6056 -128 216 0 0 0 chr11 114257228 114257252 -34526220 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 3708 213 75 4 chr11 114257252 114257374 -34526098 + L1MB7 LINE L1 6056 6168 -16 527 310 146 21 chr11 114258274 114258651 -34524821 - L2 LINE L2 -836 2478 2055 934 252 90 29 chr11 114258755 114259065 -34524407 - MER77 LTR ERV1 -222 383 55 685 324 159 26 chr11 114259124 114259660 -34523812 - L2 LINE L2 -1258 2056 1400 188 35 35 0 chr11 114259660 114259689 -34523783 + (TTG)n Simple_repeat Simple_repeat 2 31 0 685 324 159 26 chr11 114259689 114259871 -34523601 - L2 LINE L2 -1914 1400 1243 759 169 36 46 chr11 114259871 114260066 -34523406 + L1MA7 LINE L1 6093 6285 -6 207 100 0 0 chr11 114261324 114261354 -34522118 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 1671 177 0 3 chr11 114261355 114261638 -34521834 - AluJo SINE Alu -30 282 1 523 214 40 8 chr11 114263583 114263709 -34519763 + MER5B DNA MER1_type 1 130 -48 385 321 84 11 chr11 114263769 114263959 -34519513 + MIR SINE MIR 12 215 -47 189 333 63 36 chr11 114263965 114264076 -34519396 - MIR SINE MIR -101 161 48 318 291 58 58 chr11 114264731 114264937 -34518535 + MIR SINE MIR 57 262 0 785 162 32 0 chr11 114265742 114265896 -34517576 - L1MA6 LINE L1 -51 6249 6091 235 200 0 0 chr11 114265894 114265944 -34517528 + L1MA6 LINE L1 6250 6299 -1 * 417 283 19 9 chr11 114266731 114266837 -34516635 + L2 LINE L2 3195 3301 -12 607 344 31 40 chr11 114267007 114267429 -34516043 + L2 LINE L2 2839 3256 -57 21 0 0 0 chr11 114267751 114267772 -34515700 + AT_rich Low_complexity Low_complexity 1 21 0 2355 62 0 3 chr11 114267983 114268288 -34515184 + AluY SINE Alu 1 304 -7 30 27 0 0 chr11 114268693 114268730 -34514742 + AT_rich Low_complexity Low_complexity 1 37 0 2029 125 10 0 chr11 114269105 114269393 -34514079 - AluSc SINE Alu -18 291 1 269 192 20 61 chr11 114269495 114269594 -34513878 - L1MC4 LINE L1 -1339 6703 6609 25 0 0 0 chr11 114269662 114269687 -34513785 + AT_rich Low_complexity Low_complexity 1 25 0 349 304 11 11 chr11 114270155 114270247 -34513225 - MER5A DNA MER1_type 0 189 98 2574 198 17 26 chr11 114271586 114272127 -34511345 + MER74A LTR ERVL 1 536 -22 23 0 0 0 chr11 114272848 114272871 -34510601 + AT_rich Low_complexity Low_complexity 1 23 0 2157 112 3 7 chr11 114273052 114273348 -34510124 + AluSc SINE Alu 1 295 -14 309 302 163 16 chr11 114273639 114273768 -34509704 - L2 LINE L2 0 3272 3125 306 0 0 0 chr11 114274724 114274758 -34508714 + (TG)n Simple_repeat Simple_repeat 1 34 0 1866 173 52 44 chr11 114276011 114276559 -34506913 + MLT2A2 LTR ERVL 1 554 0 2530 37 0 10 chr11 114276647 114276942 -34506530 - AluY SINE Alu -13 298 7 273 258 210 16 chr11 114277177 114277301 -34506171 - MER69A DNA AcHobo -2 175 28 1204 177 31 62 chr11 114277462 114277750 -34505722 - Tigger7 DNA MER2_type 0 2487 2209 742 229 78 0 chr11 114277751 114277904 -34505568 - Tigger7 DNA MER2_type -2313 174 10 885 207 14 19 chr11 114278685 114278898 -34504574 - MER106A DNA MER1_type 0 236 25 67 0 0 0 chr11 114278898 114278965 -34504507 + AT_rich Low_complexity Low_complexity 1 67 0 218 321 24 0 chr11 114279182 114279266 -34504206 + L2 LINE L2 3185 3270 -2 216 330 21 21 chr11 114279530 114279624 -34503848 + MIR SINE MIR 65 158 -104 218 56 28 0 chr11 114279869 114279905 -34503567 + (GA)n Simple_repeat Simple_repeat 2 38 0 732 170 0 31 chr11 114279993 114280223 -34503249 + GA-rich Low_complexity Low_complexity 1 222 0 22 35 0 0 chr11 114280769 114280798 -34502674 + AT_rich Low_complexity Low_complexity 1 29 0 1533 209 21 79 chr11 114281449 114281474 -34501998 - MLT2D LTR ERVL -8 406 381 2171 135 46 3 chr11 114281474 114281823 -34501649 - THE1B LTR MaLR 0 364 1 1533 209 21 79 chr11 114281823 114281876 -34501596 - MLT2D LTR ERVL -33 381 326 249 33 0 0 chr11 114281876 114281906 -34501566 + (TA)n Simple_repeat Simple_repeat 1 30 0 * 417 39 0 0 chr11 114281905 114281956 -34501516 + (GA)n Simple_repeat Simple_repeat 2 52 0 1533 209 21 79 chr11 114281906 114282307 -34501165 - MLT2D LTR ERVL -88 326 1 5624 128 18 14 chr11 114282942 114283846 -34499626 + LTR5 LTR ERVK 1 907 -62 292 320 74 16 chr11 114284355 114284477 -34498995 - MIR SINE MIR -63 145 17 21 36 0 0 chr11 114284637 114284665 -34498807 + AT_rich Low_complexity Low_complexity 1 28 0 1877 114 0 79 chr11 114284950 114285265 -34498207 - AluSx SINE Alu -1 311 22 213 39 0 0 chr11 114286787 114286813 -34496659 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 389 264 18 92 chr11 114287309 114287582 -34495890 + L1MC5 LINE L1 7632 7884 -77 5801 193 18 38 chr11 114287598 114288683 -34494789 - L1MC1 LINE L1 -1 6332 5226 233 75 25 0 chr11 114288683 114288723 -34494749 + (TA)n Simple_repeat Simple_repeat 2 42 0 2007 133 0 0 chr11 114288729 114289008 -34494464 - AluSx SINE Alu -33 279 1 5801 193 18 38 chr11 114289008 114290199 -34493273 - L1MC1 LINE L1 -1112 5221 3852 1796 201 6 9 chr11 114290298 114290642 -34492830 + MLT2C1 LTR ERVL 1 343 -54 184 268 123 87 chr11 114291188 114291326 -34492146 + MER5B DNA MER1_type 7 149 -29 863 226 78 50 chr11 114292873 114293156 -34490316 - MLT1A1 LTR MaLR -74 291 1 2389 78 0 7 chr11 114293246 114293553 -34489919 + AluY SINE Alu 1 305 -6 230 252 0 126 chr11 114294073 114294176 -34489296 - MIR SINE MIR -56 206 117 2512 148 39 9 chr11 114294416 114294849 -34488623 - Tigger2 DNA MER2_type 0 2718 2273 333 197 0 28 chr11 114294839 114294910 -34488562 - Tigger2 DNA MER2_type -2649 69 1 * 339 239 0 43 chr11 114296247 114296339 -34487133 - L1MC4 LINE L1 -1341 6701 6614 215 308 89 35 chr11 114296986 114297155 -34486317 + MIR SINE MIR 85 262 0 248 229 12 36 chr11 114298533 114298616 -34484856 + (TATATG)n Simple_repeat Simple_repeat 3 83 0 2103 100 11 0 chr11 114298708 114299037 -34484435 + AluSp SINE Alu 1 332 0 2651 79 6 0 chr11 114299079 114299432 -34484040 - THE1A LTR MaLR 0 355 1 26 50 0 0 chr11 114299742 114299782 -34483690 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr11 114300799 114300820 -34482652 + AT_rich Low_complexity Low_complexity 1 21 0 2439 306 31 5 chr11 114301981 114302848 -34480624 + L1MC/D LINE L1 55 944 -5452 616 261 26 10 chr11 114302863 114303058 -34480414 + L1MC/D LINE L1 4868 5065 -1150 6538 173 17 47 chr11 114303059 114303464 -34480008 + L1MA4 LINE L1 3862 4278 -2022 2190 135 33 30 chr11 114303464 114303827 -34479645 - THE1B LTR MaLR 0 364 1 6538 173 17 47 chr11 114303827 114305398 -34478074 + L1MA4 LINE L1 4278 5783 -517 1827 129 4 7 chr11 114305420 114305692 -34477780 + AluY SINE Alu 21 291 -20 27 0 0 0 chr11 114305692 114305719 -34477753 + AT_rich Low_complexity Low_complexity 1 27 0 2915 157 6 6 chr11 114305719 114306240 -34477232 + L1MA4 LINE L1 5773 6293 -7 707 221 92 30 chr11 114306248 114306686 -34476786 + L1MC/D LINE L1 5049 5499 -743 2806 226 82 83 chr11 114306711 114308058 -34475414 + L1ME1 LINE L1 3749 5095 -1051 2173 98 6 41 chr11 114308058 114308198 -34475274 + AluSc SINE Alu 3 146 -163 2616 29 7 10 chr11 114308198 114308508 -34474964 + AluY SINE Alu 1 309 -2 2173 98 6 41 chr11 114308508 114308685 -34474787 + AluSc SINE Alu 146 309 0 2806 226 82 83 chr11 114308685 114308844 -34474628 + L1ME1 LINE L1 5095 5253 -893 1562 251 44 61 chr11 114308852 114309529 -34473943 + L1ME1 LINE L1 5497 6162 -4 25 31 0 0 chr11 114309543 114309575 -34473897 + AT_rich Low_complexity Low_complexity 1 32 0 222 91 0 0 chr11 114309873 114309906 -34473566 + (TTTTA)n Simple_repeat Simple_repeat 1 33 0 19920 100 10 1 chr11 114309906 114313678 -34469794 - L1PA8 LINE L1 -24 6463 2660 9877 108 67 24 chr11 114313665 114315225 -34468247 - L1PA8 LINE L1 -4828 1633 7 * 236 259 69 38 chr11 114315366 114315497 -34467975 - MER112 DNA MER1_type -86 174 40 241 326 166 28 chr11 114317250 114317431 -34466041 + MIR SINE MIR 13 218 -44 2984 93 15 24 chr11 114317774 114318234 -34465238 + L1PA8 LINE L1 5712 6167 -5 1325 220 59 89 chr11 114319572 114320077 -34463395 - L1MB5 LINE L1 0 6174 5685 286 308 130 76 chr11 114320265 114320580 -34462892 + L2 LINE L2 2941 3272 0 245 324 81 122 chr11 114321176 114321423 -34462049 + L2 LINE L2 3033 3269 -3 350 346 54 61 chr11 114323216 114323644 -34459828 + L2 LINE L2 2888 3312 -1 477 336 72 14 chr11 114323697 114323920 -34459552 + MIR SINE MIR 1 236 -26 2371 55 0 3 chr11 114324017 114324309 -34459163 + AluY SINE Alu 3 293 -18 22 0 0 0 chr11 114324570 114324592 -34458880 + AT_rich Low_complexity Low_complexity 1 22 0 437 291 88 11 chr11 114324728 114324989 -34458483 + L1ME4a LINE L1 5594 5874 -247 2493 249 71 36 chr11 114325168 114326581 -34456891 + L1ME1 LINE L1 4691 6158 -8 21 36 0 0 chr11 114327939 114327967 -34455505 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 114329126 114329147 -34454325 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 114329163 114329184 -34454288 + AT_rich Low_complexity Low_complexity 1 21 0 293 292 11 22 chr11 114329228 114329362 -34454110 - MIR3 SINE MIR -18 190 57 1646 208 3 3 chr11 114329810 114330099 -34453373 - AluJo SINE Alu -23 289 1 22 0 0 0 chr11 114330190 114330212 -34453260 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr11 114330871 114330899 -34452573 + AT_rich Low_complexity Low_complexity 1 28 0 237 338 21 49 chr11 114331889 114332031 -34451441 + L2 LINE L2 3139 3276 -37 1425 264 75 27 chr11 114332068 114332783 -34450689 - L1MEc LINE L1 -4894 1502 753 191 176 27 27 chr11 114332911 114332985 -34450487 + (TA)n Simple_repeat Simple_repeat 2 75 0 201 187 32 57 chr11 114333115 114333238 -34450234 + (TA)n Simple_repeat Simple_repeat 1 120 0 2266 296 21 11 chr11 114333241 114333954 -34449518 - L1MEc LINE L1 -5643 753 34 24 32 0 0 chr11 114335001 114335032 -34448440 + AT_rich Low_complexity Low_complexity 1 31 0 1928 269 59 58 chr11 114337859 114338908 -34444564 + L1MC4 LINE L1 6465 7514 -528 415 311 34 40 chr11 114339471 114339648 -34443824 - MER5A DNA MER1_type 0 189 14 212 187 53 0 chr11 114340020 114340095 -34443377 + (TA)n Simple_repeat Simple_repeat 1 79 0 196 333 16 0 chr11 114340352 114340415 -34443057 + L2 LINE L2 3173 3236 -36 1038 275 83 12 chr11 114340494 114340898 -34442574 - MLT1E LTR MaLR -27 566 141 244 139 0 0 chr11 114340938 114340974 -34442498 - MLT1E LTR MaLR -618 36 1 288 313 75 14 chr11 114341289 114341436 -34442036 - MIR SINE MIR 0 262 107 2426 52 0 0 chr11 114342637 114342928 -34440544 + AluY SINE Alu 1 291 -20 353 269 38 4 chr11 114343090 114343264 -34440208 - MIR SINE MIR -20 242 3 515 281 128 33 chr11 114343796 114344038 -34439434 + MLT1L LTR MaLR 351 615 0 308 240 62 78 chr11 114344067 114344202 -34439270 - MIR SINE MIR -61 147 14 297 247 118 0 chr11 114344653 114344746 -34438726 - MIR SINE MIR -79 183 80 1761 193 131 1 chr11 114345075 114345489 -34437983 + L1MB5 LINE L1 5670 6140 -34 459 0 0 0 chr11 114345549 114345600 -34437872 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 227 227 15 0 chr11 114345600 114345666 -34437806 + (CA)n Simple_repeat Simple_repeat 2 68 0 315 357 60 12 chr11 114346201 114346369 -34437103 + L2 LINE L2 1403 1578 -1736 5066 257 48 23 chr11 114346427 114347915 -34435557 + ERVL LTR ERVL 3398 5014 -750 1253 118 0 0 chr11 114347921 114348099 -34435373 + AluSp SINE Alu 135 312 -1 1341 217 102 45 chr11 114348127 114348570 -34434902 + ERVL LTR ERVL 5038 5505 -259 212 246 14 0 chr11 114348632 114348701 -34434771 + (TG)n Simple_repeat Simple_repeat 2 71 0 305 244 81 12 chr11 114350281 114350367 -34433105 - LTR16A1 LTR ERVL -27 430 339 274 126 195 12 chr11 114350677 114350759 -34432713 + L1MC3 LINE L1 7506 7584 -201 1014 275 56 22 chr11 114350759 114351119 -34432353 - MLT1D LTR MaLR 0 505 134 802 235 39 93 chr11 114351116 114351510 -34431962 + MLT1A2 LTR MaLR 7 390 0 * 797 215 37 0 chr11 114351537 114351728 -34431744 + L1MC3 LINE L1 7582 7779 -6 9721 220 22 32 chr11 114351895 114355060 -34428412 + L1PA10 LINE L1 1 4463 -3121 8782 138 11 53 chr11 114355060 114357331 -34426141 + L1PA10 LINE L1 5339 7591 -15 198 71 0 0 chr11 114357334 114357362 -34426110 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 22 0 0 0 chr11 114357666 114357688 -34425784 + AT_rich Low_complexity Low_complexity 1 22 0 369 0 0 0 chr11 114358084 114358125 -34425347 + (CA)n Simple_repeat Simple_repeat 1 41 0 21 36 0 0 chr11 114358876 114358904 -34424568 + AT_rich Low_complexity Low_complexity 1 28 0 8222 119 19 6 chr11 114359697 114360966 -34422506 - L1PA8 LINE L1 -1503 4643 3358 6398 87 8 3 chr11 114360966 114362455 -34421017 + L1PA8 LINE L1 4667 6159 -13 4453 251 94 25 chr11 114363006 114364977 -34418495 + L1MB5 LINE L1 542 2634 -4012 4705 204 20 7 chr11 114364977 114365885 -34417587 + ERVL LTR ERVL 4026 4945 -819 2520 254 52 26 chr11 114365955 114366886 -34416586 + L1MB5 LINE L1 3934 4888 -1756 1277 120 19 42 chr11 114366887 114367103 -34416369 - THE1B LTR MaLR 0 364 154 1889 21 0 0 chr11 114367103 114367338 -34416134 - L1PA3 LINE L1 -758 5388 5154 6485 29 0 0 chr11 114367338 114368097 -34415375 + L1PA3 LINE L1 5394 6152 -3 27 0 0 0 chr11 114368164 114368191 -34415281 + AT_rich Low_complexity Low_complexity 1 27 0 952 169 12 0 chr11 114368191 114368357 -34415115 - THE1B LTR MaLR -196 168 1 9327 102 16 13 chr11 114368357 114369690 -34413782 - THE1B-int LTR MaLR 0 1580 244 2874 230 86 33 chr11 114369688 114370144 -34413328 + L1MB5 LINE L1 5168 5599 -1073 * 198 0 0 0 chr11 114370144 114370166 -34413306 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 2874 230 86 33 chr11 114370166 114370736 -34412736 + L1MB5 LINE L1 5599 6290 -382 1642 179 9 31 chr11 114370736 114371054 -34412418 - 7SLRNA srpRNA srpRNA 0 320 10 2874 230 86 33 chr11 114371054 114371441 -34412031 + L1MB5 LINE L1 6290 6655 -17 1260 288 76 71 chr11 114371724 114372470 -34411002 - MER21B LTR ERV1 -113 750 1 2281 100 3 0 chr11 114372683 114372993 -34410479 + AluY SINE Alu 1 311 0 300 284 42 113 chr11 114372998 114373407 -34410065 - L1MEd LINE L1 -4893 2054 1675 2134 217 138 26 chr11 114374210 114375039 -34408433 - Zaphod DNA AcHobo -817 3214 2294 2651 233 51 5 chr11 114375039 114375671 -34407801 - L1MEd LINE L1 -5578 1281 621 1650 260 73 54 chr11 114375814 114376388 -34407084 - L1MEd LINE L1 -6264 595 11 1481 271 92 41 chr11 114376426 114377320 -34406152 - Zaphod DNA AcHobo -1854 2177 1239 249 33 0 0 chr11 114378419 114378449 -34405023 + (TA)n Simple_repeat Simple_repeat 1 30 0 476 295 123 69 chr11 114378957 114379421 -34404051 - LTR67 LTR ERVL -39 518 30 475 272 19 75 chr11 114379772 114379985 -34403487 + L2 LINE L2 3108 3308 -5 21 36 0 0 chr11 114380128 114380156 -34403316 + AT_rich Low_complexity Low_complexity 1 28 0 225 0 0 0 chr11 114380173 114380198 -34403274 + (TC)n Simple_repeat Simple_repeat 2 26 0 225 0 0 0 chr11 114380197 114380222 -34403250 + (TA)n Simple_repeat Simple_repeat 2 26 0 1813 96 85 43 chr11 114380899 114381181 -34402291 - AluSg SINE Alu -16 294 1 262 289 133 22 chr11 114381189 114381369 -34402103 - L2 LINE L2 -6 3307 3108 331 353 75 25 chr11 114382846 114383047 -34400425 + L3 LINE CR1 963 1173 -404 180 296 92 20 chr11 114383143 114383241 -34400231 + L3 LINE CR1 1309 1413 -164 22 70 0 0 chr11 114383525 114383568 -34399904 + AT_rich Low_complexity Low_complexity 1 43 0 253 324 19 0 chr11 114383888 114383996 -34399476 - L1ME LINE L1 -457 5664 5555 228 240 144 34 chr11 114384505 114384651 -34398821 - MIR SINE MIR 0 262 101 318 115 0 0 chr11 114384674 114384726 -34398746 + (TA)n Simple_repeat Simple_repeat 1 52 0 330 273 30 30 chr11 114385671 114385803 -34397669 + L1ME LINE L1 895 1026 -6112 1544 239 29 20 chr11 114385806 114386551 -34396921 + L1ME LINE L1 5691 6437 -540 458 323 50 15 chr11 114386561 114386759 -34396713 + L1MEc LINE L1 1440 1644 -5215 458 231 89 49 chr11 114387274 114387460 -34396012 + L1MEc LINE L1 1766 1943 -5014 544 13 53 0 chr11 114387460 114387535 -34395937 + (GAAA)n Simple_repeat Simple_repeat 3 81 0 458 231 89 49 chr11 114387535 114387696 -34395776 + L1MEc LINE L1 1943 2136 -4821 * 548 273 105 38 chr11 114387693 114388070 -34395402 + L1M1 LINE L1 1635 2149 -4414 2733 211 83 38 chr11 114388121 114389056 -34394416 + L1ME2 LINE L1 5147 6117 -47 189 0 0 0 chr11 114389133 114389154 -34394318 + (TG)n Simple_repeat Simple_repeat 2 22 0 2142 147 60 58 chr11 114389397 114389845 -34393627 + LTR47A LTR ERVL 4 452 0 2310 75 0 3 chr11 114391387 114391681 -34391791 - AluSq SINE Alu -20 293 1 2225 113 3 0 chr11 114392058 114392368 -34391104 - AluSp SINE Alu -2 311 1 2138 154 8 24 chr11 114392718 114393088 -34390384 - THE1B LTR MaLR 0 364 1 10348 121 12 26 chr11 114393093 114394689 -34388783 - THE1B-int LTR MaLR -6 1574 1 2300 146 5 24 chr11 114394689 114395060 -34388412 - THE1B LTR MaLR 0 364 1 183 100 0 0 chr11 114395222 114395252 -34388220 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 244 254 0 0 chr11 114396913 114396968 -34386504 + (TA)n Simple_repeat Simple_repeat 1 55 0 384 200 11 46 chr11 114396970 114397145 -34386327 + (CATATA)n Simple_repeat Simple_repeat 3 171 0 1350 174 39 93 chr11 114397706 114398092 -34385380 + MLT1A1 LTR MaLR 1 365 0 225 178 0 0 chr11 114398333 114398378 -34385094 + CT-rich Low_complexity Low_complexity 4 48 0 1503 203 17 3 chr11 114398701 114398997 -34384475 - AluJb SINE Alu -12 300 1 491 314 44 6 chr11 114399182 114399341 -34384131 - MIR SINE MIR -95 167 3 31 0 0 0 chr11 114400419 114400450 -34383022 + AT_rich Low_complexity Low_complexity 1 31 0 309 242 50 42 chr11 114400701 114400821 -34382651 + LTR16A1 LTR ERVL 23 143 -314 565 297 24 0 chr11 114400856 114401021 -34382451 + LTR16A1 LTR ERVL 289 457 0 2368 60 26 0 chr11 114401155 114401457 -34382015 - AluY SINE Alu -1 310 1 391 281 98 39 chr11 114401513 114401716 -34381756 - L2 LINE L2 -4 3309 3095 22 0 0 0 chr11 114402126 114402148 -34381324 + AT_rich Low_complexity Low_complexity 1 22 0 3262 149 70 23 chr11 114402681 114403735 -34379737 - Tigger3b DNA MER2_type -3 1229 1 7053 262 79 18 chr11 114403789 114407367 -34376105 + L1ME1 LINE L1 1619 5418 -797 1034 217 183 7 chr11 114407367 114407662 -34375810 + L1MB8 LINE L1 5818 6164 -14 2404 257 72 20 chr11 114407680 114407957 -34375515 + L1ME1 LINE L1 5429 5690 -545 1847 206 48 69 chr11 114407957 114408582 -34374890 - LTR9 LTR ERV1 0 612 1 216 0 0 0 chr11 114408584 114408608 -34374864 + (CA)n Simple_repeat Simple_repeat 2 25 0 2404 257 72 20 chr11 114408608 114409089 -34374383 + L1ME1 LINE L1 5690 6230 -5 21 0 0 0 chr11 114409196 114409217 -34374255 + AT_rich Low_complexity Low_complexity 1 21 0 301 317 50 0 chr11 114410620 114410721 -34372751 - MIR SINE MIR -88 174 69 26 30 0 0 chr11 114412519 114412552 -34370920 + AT_rich Low_complexity Low_complexity 1 33 0 180 158 0 0 chr11 114412569 114412607 -34370865 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 264 167 0 0 chr11 114413042 114413084 -34370388 + 5S rRNA rRNA 1 42 -79 279 287 24 79 chr11 114413230 114413394 -34370078 + L1ME4a LINE L1 4015 4169 -1977 673 37 0 0 chr11 114413568 114413649 -34369823 - L1PA5 LINE L1 -164 5990 5910 383 88 0 0 chr11 114413649 114413700 -34369772 + L1PA5 LINE L1 6098 6154 0 484 145 0 0 chr11 114413700 114413776 -34369696 + L1M2 LINE L1 5605 5680 -632 1961 119 3 25 chr11 114413948 114414292 -34369180 - AluSg SINE Alu 0 338 1 297 244 11 11 chr11 114414330 114414420 -34369052 + L1ME4a LINE L1 4767 4856 -1290 21 26 0 26 chr11 114414494 114414513 -34368959 + AT_rich Low_complexity Low_complexity 1 19 -19 2421 45 0 0 chr11 114414513 114414800 -34368672 - AluY SINE Alu -24 287 1 21 26 0 26 chr11 114414800 114414819 -34368653 + AT_rich Low_complexity Low_complexity 19 38 0 30 89 0 0 chr11 114414834 114414913 -34368559 + AT_rich Low_complexity Low_complexity 1 79 0 276 247 14 0 chr11 114415473 114415546 -34367926 + L1ME4a LINE L1 5594 5667 -454 298 296 90 5 chr11 114415557 114415780 -34367692 + L1ME4a LINE L1 5707 5948 -173 317 185 0 12 chr11 114416167 114416248 -34367224 + GA-rich Low_complexity Low_complexity 1 80 0 339 216 147 20 chr11 114417159 114417276 -34366196 + MER104 DNA Tc2 59 179 -1 5520 133 20 6 chr11 114418119 114419071 -34364401 - L1PA16 LINE L1 -9 6157 5192 199 315 72 9 chr11 114419611 114419722 -34363750 + MIR SINE MIR 66 183 -79 2520 148 13 20 chr11 114420014 114420467 -34363005 - L1PA16 LINE L1 0 6166 5717 23 78 0 0 chr11 114420487 114420538 -34362934 + AT_rich Low_complexity Low_complexity 1 51 0 24 0 0 0 chr11 114421311 114421335 -34362137 + AT_rich Low_complexity Low_complexity 1 24 0 415 267 0 7 chr11 114422362 114422497 -34360975 + (TA)n Simple_repeat Simple_repeat 2 135 0 466 248 74 0 chr11 114422782 114422903 -34360569 + MIR SINE MIR 79 208 -54 355 319 44 0 chr11 114423517 114423630 -34359842 + MIR SINE MIR 57 174 -88 662 232 42 21 chr11 114423933 114424123 -34359349 - MIR SINE MIR -10 252 59 825 301 164 12 chr11 114424150 114424785 -34358687 - L2 LINE L2 -2 3311 2575 739 157 22 22 chr11 114424829 114424963 -34358509 + AluJo SINE Alu 1 134 -178 435 236 178 29 chr11 114425020 114425194 -34358278 - L2 LINE L2 -777 2537 2338 687 321 36 13 chr11 114425254 114425559 -34357913 - MLT1I LTR MaLR 0 409 98 1128 289 121 2 chr11 114425649 114426078 -34357394 - L2 LINE L2 -1069 2245 1766 219 36 0 0 chr11 114427667 114427695 -34355777 + (TTA)n Simple_repeat Simple_repeat 3 30 0 874 47 0 0 chr11 114427695 114427802 -34355670 - L1PA4 LINE L1 -18 6137 6031 368 261 174 14 chr11 114429179 114429317 -34354155 + MIR SINE MIR 103 262 0 390 200 0 0 chr11 114429817 114429887 -34353585 + Tigger5 DNA MER2_type 2254 2323 0 8558 27 3 0 chr11 114431336 114432873 -34350599 + L1PA4 LINE L1 4352 5892 -263 287 203 0 14 chr11 114432983 114433052 -34350420 - L1 LINE L1 -1555 4591 4524 1100 193 33 47 chr11 114433087 114433388 -34350084 + L1MA10 LINE L1 6038 6334 0 275 320 30 0 chr11 114433766 114433866 -34349606 + MER94 DNA DNA 11 113 -21 613 280 62 111 chr11 114433892 114434003 -34349469 - L1M4 LINE L1 -1147 4999 4884 2432 62 0 7 chr11 114434003 114434310 -34349162 + AluY SINE Alu 1 305 -6 613 280 62 111 chr11 114434310 114434548 -34348924 - L1M4 LINE L1 -1262 4884 4636 204 111 0 0 chr11 114434548 114434584 -34348888 + (CA)n Simple_repeat Simple_repeat 1 36 0 613 280 62 111 chr11 114434584 114434997 -34348475 - L1M4 LINE L1 -1510 4636 4274 783 204 31 59 chr11 114434999 114435254 -34348218 - L1M4 LINE L1 -852 5294 5047 523 332 15 10 chr11 114435301 114435506 -34347966 + MIR SINE MIR 42 247 -15 736 152 73 26 chr11 114436003 114436154 -34347318 - AluJo SINE Alu -21 291 134 429 245 0 0 chr11 114436200 114436298 -34347174 - AluJo SINE Alu -177 125 28 24 0 0 0 chr11 114436432 114436456 -34347016 + AT_rich Low_complexity Low_complexity 1 24 0 353 262 137 36 chr11 114437125 114437293 -34346179 + MIR SINE MIR 54 238 -24 519 363 75 17 chr11 114438380 114438859 -34344613 + L2 LINE L2 1528 2034 -1280 182 331 53 41 chr11 114438876 114439045 -34344427 + L2 LINE L2 2325 2495 -819 2783 10 0 0 chr11 114439304 114439612 -34343860 + AluYb8 SINE Alu 1 308 -10 180 0 0 0 chr11 114439777 114439797 -34343675 + (A)n Simple_repeat Simple_repeat 1 20 0 25 0 0 0 chr11 114440182 114440207 -34343265 + AT_rich Low_complexity Low_complexity 1 25 0 262 290 78 35 chr11 114440232 114440463 -34343009 - L1MEd LINE L1 -3656 2473 2233 1759 233 47 53 chr11 114440735 114441335 -34342137 - L1ME2 LINE L1 -9 6155 5560 1155 159 55 0 chr11 114441697 114441844 -34341628 - L1MA9 LINE L1 0 6312 6148 333 0 0 0 chr11 114441844 114441881 -34341591 + (TG)n Simple_repeat Simple_repeat 2 38 0 1155 159 55 0 chr11 114441881 114441953 -34341519 - L1MA9 LINE L1 -164 6148 6081 307 299 63 16 chr11 114441953 114442080 -34341392 - HAL1 LINE L1 -939 1568 1436 2217 82 0 0 chr11 114442089 114442396 -34341076 + AluSc SINE Alu 1 307 0 373 327 39 24 chr11 114442504 114442709 -34340763 - L1MEd LINE L1 -4934 1185 978 198 0 0 0 chr11 114442739 114442761 -34340711 + (TA)n Simple_repeat Simple_repeat 1 22 0 416 222 96 42 chr11 114442877 114443044 -34340428 - L1MEd LINE L1 -5942 177 2 30 59 0 0 chr11 114443837 114443888 -34339584 + AT_rich Low_complexity Low_complexity 1 51 0 1886 123 0 4 chr11 114443995 114444256 -34339216 + AluSx SINE Alu 1 260 -52 192 77 0 0 chr11 114444358 114444384 -34339088 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1905 126 27 20 chr11 114444758 114445059 -34338413 + AluSx SINE Alu 1 303 -9 25 95 0 0 chr11 114446595 114446669 -34336803 + AT_rich Low_complexity Low_complexity 1 74 0 22 0 0 0 chr11 114446717 114446739 -34336733 + AT_rich Low_complexity Low_complexity 1 22 0 199 210 99 25 chr11 114447094 114447175 -34336297 - MIR SINE MIR -92 116 30 211 202 12 71 chr11 114447528 114447612 -34335860 + A-rich Low_complexity Low_complexity 1 79 0 3182 208 14 44 chr11 114447635 114448403 -34335069 + L1MD2 LINE L1 5520 6264 -95 258 32 0 0 chr11 114448404 114448435 -34335037 + (CA)n Simple_repeat Simple_repeat 2 32 0 2078 174 38 38 chr11 114448524 114448950 -34334522 + MSTB LTR MaLR 1 426 0 1922 137 43 43 chr11 114449947 114450320 -34333152 - THE1C LTR MaLR -2 373 1 802 199 75 20 chr11 114450752 114450953 -34332519 + L1MD3 LINE L1 7774 7985 -10 302 303 145 5 chr11 114451073 114451294 -34332178 + L1 LINE L1 4185 4436 -1710 1169 197 115 36 chr11 114451316 114451621 -34331851 - MER2 DNA MER2_type 0 345 17 1899 244 56 49 chr11 114451650 114452981 -34330491 - L1MDb LINE L1 -2535 3871 2414 1963 229 113 18 chr11 114453019 114453872 -34329600 - L1MDb LINE L1 -4318 2089 889 378 294 161 57 chr11 114454663 114454942 -34328530 - L2 LINE L2 0 3313 3006 23 54 0 0 chr11 114455107 114455144 -34328328 + AT_rich Low_complexity Low_complexity 1 37 0 180 0 0 0 chr11 114455345 114455365 -34328107 + (TTCC)n Simple_repeat Simple_repeat 3 22 0 1232 224 41 20 chr11 114455401 114455695 -34327777 - AluJo SINE Alu 0 302 3 2335 135 80 12 chr11 114455896 114456319 -34327153 - LTR47A LTR ERVL 0 452 1 31 26 0 0 chr11 114457553 114457591 -34325881 + AT_rich Low_complexity Low_complexity 1 38 0 402 343 50 25 chr11 114457806 114458007 -34325465 - MIR SINE MIR -56 206 1 1383 158 12 4 chr11 114458210 114458463 -34325009 - Tigger4(Zombi) DNA MER2_type -1 2730 2476 364 256 0 0 chr11 114458455 114458537 -34324935 - Tigger4(Zombi) DNA MER2_type -2649 82 1 * 23 78 0 0 chr11 114459059 114459110 -34324362 + AT_rich Low_complexity Low_complexity 1 51 0 6941 243 104 31 chr11 114459120 114464327 -34319145 + L1M3e LINE L1 3 5278 -1828 7643 218 25 7 chr11 114464330 114465937 -34317535 + L1M1 LINE L1 17 1652 -5913 920 176 55 12 chr11 114465937 114466122 -34317350 + THE1B LTR MaLR 180 364 0 466 279 23 16 chr11 114466163 114466292 -34317180 + L2 LINE L2 3184 3313 0 2030 264 108 63 chr11 114466379 114469076 -34314396 - L1M4 LINE L1 -3273 3684 830 387 229 25 17 chr11 114469201 114469319 -34314153 - L1M4 LINE L1 -6334 521 96 30 27 0 0 chr11 114470115 114470152 -34313320 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr11 114470431 114470453 -34313019 + AT_rich Low_complexity Low_complexity 1 22 0 264 202 39 0 chr11 114472226 114472286 -34311186 + MIR SINE MIR 52 114 -94 570 265 0 0 chr11 114472485 114472602 -34310870 + FLAM_A SINE Alu 1 117 -16 9010 206 50 8 chr11 114472717 114474520 -34308952 + L1MA3 LINE L1 12 1891 -5674 * 12605 169 18 41 chr11 114474518 114478057 -34305415 + L1MA3 LINE L1 2319 5686 -2038 7371 26 23 1 chr11 114478057 114479041 -34304431 + L1PA3 LINE L1 5153 6155 0 12605 169 18 41 chr11 114479041 114481032 -34302440 + L1MA3 LINE L1 5686 7721 -3 23 0 0 0 chr11 114481146 114481169 -34302303 + AT_rich Low_complexity Low_complexity 1 23 0 207 306 35 24 chr11 114481514 114481599 -34301873 - L2 LINE L2 -1 3312 3227 460 283 68 122 chr11 114481599 114481953 -34301519 - HAL1 LINE L1 -976 1531 1197 246 189 19 0 chr11 114481956 114482009 -34301463 - MER58 DNA MER1_type 0 2420 2367 238 212 12 24 chr11 114482041 114482126 -34301346 + CT-rich Low_complexity Low_complexity 6 89 0 311 259 21 0 chr11 114482294 114482375 -34301097 + MIR SINE MIR 74 156 -61 248 307 60 41 chr11 114482452 114482670 -34300802 - HAL1 LINE L1 -1487 1020 799 21 0 0 0 chr11 114483364 114483385 -34300087 + AT_rich Low_complexity Low_complexity 1 21 0 394 306 0 18 chr11 114483618 114483754 -34299718 + MIR SINE MIR 4 138 -70 26 0 0 0 chr11 114484633 114484659 -34298813 + AT_rich Low_complexity Low_complexity 1 26 0 934 178 0 11 chr11 114484659 114484833 -34298639 - L1PB1 LINE L1 -3 6148 5977 708 144 18 0 chr11 114484975 114485086 -34298386 - MLT1B LTR MaLR -9 381 269 333 191 0 0 chr11 114485084 114485147 -34298325 - MLT1B LTR MaLR -266 124 62 * 304 354 0 26 chr11 114485436 114485576 -34297896 - MIR SINE MIR -70 138 1 1761 136 7 18 chr11 114486296 114486582 -34296890 + AluSx SINE Alu 1 283 -29 283 329 59 7 chr11 114486909 114487061 -34296411 + MIR SINE MIR 102 261 -1 1692 68 9 0 chr11 114487594 114487844 -34295628 + L1PA8 LINE L1 5931 6182 0 1526 194 10 20 chr11 114488401 114488700 -34294772 + AluJb SINE Alu 3 298 -14 667 168 16 15 chr11 114488710 114488945 -34294527 + GA-rich Low_complexity Low_complexity 1 235 0 1335 281 104 31 chr11 114489158 114489926 -34293546 - L2 LINE L2 -2 3311 2476 240 293 106 16 chr11 114490202 114490325 -34293147 + MIR SINE MIR 58 191 -71 2443 41 10 0 chr11 114490432 114490725 -34292747 - AluY SINE Alu -15 296 1 832 165 6 112 chr11 114493687 114494026 -34289446 - AluSp SINE Alu -10 303 1 228 122 0 0 chr11 114494165 114494206 -34289266 + (TG)n Simple_repeat Simple_repeat 2 42 0 807 197 133 47 chr11 114494246 114494479 -34288993 - MLT2C1 LTR ERVL -123 274 22 2028 157 55 6 chr11 114495093 114495437 -34288035 + THE1B LTR MaLR 3 363 -1 9894 117 36 32 chr11 114495438 114495910 -34287562 + THE1B-int LTR MaLR 1 470 -1110 1994 89 44 4 chr11 114495910 114496220 -34287252 + AluY SINE Alu 1 321 0 9894 117 36 32 chr11 114496220 114497321 -34286151 + THE1B-int LTR MaLR 470 1580 0 2257 143 22 6 chr11 114497321 114497679 -34285793 + THE1B LTR MaLR 1 364 0 1274 329 39 28 chr11 114498052 114498617 -34284855 + L2 LINE L2 900 1470 -1844 481 179 94 0 chr11 114498801 114498907 -34284565 + L1PA16 LINE L1 6042 6157 -9 370 252 98 0 chr11 114498965 114499088 -34284384 + L1ME2 LINE L1 5202 5336 -810 21 0 0 0 chr11 114499090 114499111 -34284361 + AT_rich Low_complexity Low_complexity 1 21 0 1668 139 7 63 chr11 114499119 114499420 -34284052 - AluJo SINE Alu -28 284 1 1229 256 36 29 chr11 114499427 114499841 -34283631 + L1ME2 LINE L1 5342 5758 -406 223 172 0 31 chr11 114499861 114499925 -34283547 + (TA)n Simple_repeat Simple_repeat 1 62 0 1954 137 25 0 chr11 114499929 114500213 -34283259 - AluSx SINE Alu -21 291 1 1238 255 40 5 chr11 114500217 114500589 -34282883 + L1ME2 LINE L1 5779 6163 -1 434 392 44 12 chr11 114501691 114502010 -34281462 - L2 LINE L2 -508 2806 2478 616 119 2 0 chr11 114502271 114502381 -34281091 + L1PA12 LINE L1 2656 2759 -4815 2181 90 4 0 chr11 114502381 114502659 -34280813 + AluY SINE Alu 1 279 -32 300 53 0 0 chr11 114502661 114502699 -34280773 + (CAA)n Simple_repeat Simple_repeat 2 39 0 615 143 0 0 chr11 114502699 114502804 -34280668 + L1MA1 LINE L1 5946 6050 -252 1554 126 4 0 chr11 114502811 114503041 -34280431 + AluSx SINE Alu 1 231 -81 25 23 0 23 chr11 114503145 114503160 -34280312 + AT_rich Low_complexity Low_complexity 1 15 -27 1755 79 8 4 chr11 114503160 114503413 -34280059 + L1MA1 LINE L1 6045 6298 -4 25 23 0 23 chr11 114503413 114503440 -34280032 + AT_rich Low_complexity Low_complexity 15 42 0 487 146 0 21 chr11 114506189 114506285 -34277187 - L1MA4 LINE L1 -1 6299 6206 4079 132 29 27 chr11 114506293 114507116 -34276356 - L1MA4 LINE L1 -312 5988 5160 2068 174 6 41 chr11 114507155 114507621 -34275851 - L1MA4 LINE L1 -985 5161 4712 189 0 0 0 chr11 114507632 114507653 -34275819 + (T)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chr11 114507675 114507696 -34275776 + GC_rich Low_complexity Low_complexity 1 21 0 412 129 0 0 chr11 114557696 114557758 -34225714 - L1MA4 LINE L1 -2383 3763 3702 * 1157 123 54 20 chr11 114557757 114557961 -34225511 + L1P LINE L1 4845 5055 -1091 261 357 135 4 chr11 114557973 114558217 -34225255 + L1ME LINE L1 5540 5815 -355 687 204 11 88 chr11 114558220 114558401 -34225071 + MER5A DNA MER1_type 10 176 -13 532 288 93 43 chr11 114560118 114560514 -34222958 + L1PA15 LINE L1 5461 5876 -289 * 2867 189 74 11 chr11 114560160 114560784 -34222688 + L1MB7 LINE L1 5502 6164 -20 21 0 0 0 chr11 114560812 114560833 -34222639 + AT_rich Low_complexity Low_complexity 1 21 0 189 302 69 52 chr11 114561148 114561264 -34222208 - MIR3 SINE MIR -21 187 70 2220 164 16 64 chr11 114561380 114561830 -34221642 - MSTC LTR MaLR 0 428 1 991 297 61 32 chr11 114561912 114562407 -34221065 + L2 LINE L2 2805 3313 0 1364 156 23 108 chr11 114563462 114563814 -34219658 - MLT1B LTR MaLR 0 390 69 395 390 52 22 chr11 114564582 114564990 -34218482 + L2 LINE L2 2809 3228 -44 1155 173 118 41 chr11 114565399 114565670 -34217802 + AluJb SINE Alu 2 293 -9 29 0 0 0 chr11 114565675 114565704 -34217768 + AT_rich Low_complexity Low_complexity 1 29 0 389 314 72 20 chr11 114565830 114566289 -34217183 + L1M4 LINE L1 2131 2613 -3533 466 351 94 46 chr11 114566834 114567247 -34216225 + L2 LINE L2 2843 3275 -38 1997 209 86 20 chr11 114567250 114567761 -34215711 - LTR48 LTR ERV1 -2 785 241 184 358 37 37 chr11 114567915 114568024 -34215448 + MIR3 SINE MIR 46 154 -54 982 211 16 0 chr11 114568169 114568354 -34215118 + AluJb SINE Alu 104 291 -21 309 299 23 0 chr11 114568364 114568451 -34215021 + L1MC4 LINE L1 6615 6703 -1339 * 324 289 0 0 chr11 114568421 114568511 -34214961 - L1MC4 LINE L1 -1339 6703 6614 414 272 68 0 chr11 114568568 114568671 -34214801 - MER39 LTR ERV1 -595 112 3 215 333 0 0 chr11 114568683 114568740 -34214732 - L3b LINE CR1 -3 1580 1524 229 176 0 39 chr11 114568857 114568908 -34214564 + GA-rich Low_complexity Low_complexity 2 50 0 29 28 0 0 chr11 114569186 114569222 -34214250 + AT_rich Low_complexity Low_complexity 1 36 0 273 391 32 11 chr11 114569688 114569877 -34213595 + MIR SINE MIR 6 198 -64 306 303 109 66 chr11 114570029 114570497 -34212975 - L2 LINE L2 -1100 2214 1727 381 299 86 16 chr11 114571717 114571961 -34211511 + MIR SINE MIR 2 262 0 27 0 0 0 chr11 114572096 114572123 -34211349 + AT_rich Low_complexity Low_complexity 1 27 0 272 120 20 40 chr11 114572224 114572274 -34211198 - MER39 LTR ERV1 -1 706 658 183 327 96 10 chr11 114572611 114572715 -34210757 - L3 LINE CR1 -103 1474 1362 433 297 117 22 chr11 114572819 114573041 -34210431 - L3 LINE CR1 -244 1333 1091 22 35 0 0 chr11 114573234 114573263 -34210209 + AT_rich Low_complexity Low_complexity 1 29 0 241 180 16 49 chr11 114573566 114573627 -34209845 + (CACCAT)n Simple_repeat Simple_repeat 1 59 0 465 283 13 31 chr11 114573632 114573791 -34209681 - MIR SINE MIR -13 249 94 198 304 174 26 chr11 114573905 114574020 -34209452 - L2 LINE L2 -6 3307 3176 1120 130 12 0 chr11 114574859 114575021 -34208451 + AluSq SINE Alu 87 250 -63 279 366 85 40 chr11 114575121 114575345 -34208127 + L3 LINE CR1 1342 1575 -2 252 347 26 63 chr11 114576007 114576197 -34207275 + MER5A DNA MER1_type 7 189 0 23 0 0 0 chr11 114576428 114576451 -34207021 + AT_rich Low_complexity Low_complexity 1 23 0 837 215 0 2 chr11 114576610 114576870 -34206602 - AluJb SINE Alu -6 306 1 2237 193 20 21 chr11 114577005 114577541 -34205931 - MER39 LTR ERV1 -117 590 1 3288 175 16 58 chr11 114578474 114579161 -34204311 - LTR8 LTR ERV1 0 691 34 239 161 48 0 chr11 114579425 114579487 -34203985 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 1818 187 46 94 chr11 114579602 114579765 -34203707 + LTR49 LTR ERV1 1 170 -425 2181 68 0 0 chr11 114579765 114580044 -34203428 + AluY SINE Alu 1 279 -32 207 0 0 0 chr11 114580047 114580070 -34203402 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 1818 187 46 94 chr11 114580070 114580286 -34203186 + LTR49 LTR ERV1 172 325 -270 3030 188 30 62 chr11 114580286 114581032 -34202440 - MER72 LTR ERV1 0 722 1 1818 187 46 94 chr11 114581032 114581260 -34202212 + LTR49 LTR ERV1 325 563 -32 2237 92 0 17 chr11 114581587 114581881 -34201591 + AluY SINE Alu 1 289 -22 2846 161 82 6 chr11 114582176 114582716 -34200756 - MER34C LTR ERV1 0 585 5 341 325 114 0 chr11 114582721 114582887 -34200585 + MLT1L LTR MaLR 183 367 -248 2625 228 38 80 chr11 114582931 114583774 -34199698 + MER21B LTR ERV1 5 812 -51 2225 199 50 87 chr11 114584445 114585162 -34198310 - LTR8 LTR ERV1 0 691 1 3481 149 49 11 chr11 114585721 114586350 -34197122 + MER39B LTR ERV1 1 653 0 264 100 0 0 chr11 114586386 114586426 -34197046 - AluJb SINE Alu -8 294 255 906 211 49 5 chr11 114586426 114586611 -34196861 - AluJb SINE Alu -119 193 1 2556 51 0 13 chr11 114586952 114587267 -34196205 + AluY SINE Alu 1 311 0 204 345 24 55 chr11 114587369 114587534 -34195938 - L3 LINE CR1 -337 1240 1081 2246 53 39 3 chr11 114587680 114587964 -34195508 + AluY SINE Alu 15 308 -3 28 61 0 0 chr11 114588316 114588365 -34195107 + AT_rich Low_complexity Low_complexity 1 49 0 1966 163 53 12 chr11 114588517 114588928 -34194544 - MSTA LTR MaLR 0 428 1 550 321 30 39 chr11 114589361 114589822 -34193650 + L1MEc LINE L1 1366 1822 -4574 2733 262 71 63 chr11 114590119 114590325 -34193147 + L1MB7 LINE L1 16 219 -6323 1561 204 3 10 chr11 114590325 114590629 -34192843 - AluJb SINE Alu -10 302 1 2733 262 71 63 chr11 114590629 114591635 -34191837 + L1MB7 LINE L1 219 1237 -5305 3253 226 58 23 chr11 114591636 114591869 -34191603 + L1MB7 LINE L1 5422 5645 -1037 2304 86 0 26 chr11 114591869 114592173 -34191299 + AluY SINE Alu 1 296 -15 3253 226 58 23 chr11 114592173 114592725 -34190747 + L1MB7 LINE L1 5645 6258 -424 2523 46 0 10 chr11 114592725 114593031 -34190441 + AluY SINE Alu 1 303 -8 3253 226 58 23 chr11 114593031 114593462 -34190010 + L1MB7 LINE L1 6258 6672 -10 3095 280 107 37 chr11 114593488 114594070 -34189402 + L1M4 LINE L1 2615 3155 -3489 2217 107 0 0 chr11 114594070 114594369 -34189103 + AluSq SINE Alu 1 299 -14 3095 280 107 37 chr11 114594369 114594898 -34188574 + L1M4 LINE L1 3155 3645 -2999 1537 194 3 3 chr11 114594898 114595191 -34188281 - AluJo SINE Alu -13 299 7 3095 280 107 37 chr11 114595191 114596973 -34186499 + L1M4 LINE L1 3645 5680 -964 1607 160 28 14 chr11 114597033 114597321 -34186151 + AluJo SINE Alu 1 292 -20 236 229 72 48 chr11 114597466 114597549 -34185923 - MER94 DNA DNA -9 125 41 50 31 0 0 chr11 114597551 114597615 -34185857 + AT_rich Low_complexity Low_complexity 1 64 0 278 289 123 60 chr11 114597657 114597941 -34185531 - L3 LINE CR1 -535 1042 741 670 216 85 116 chr11 114598233 114598492 -34184980 + MIR SINE MIR 2 252 -10 340 339 38 31 chr11 114598524 114598820 -34184652 - MLT1J LTR MaLR -144 367 27 1936 115 47 0 chr11 114599047 114599326 -34184146 - AluY SINE Alu -19 292 1 2105 125 3 13 chr11 114599973 114600285 -34183187 - AluSx SINE Alu -3 309 1 1350 182 88 32 chr11 114601283 114601721 -34181751 - LTR54 LTR ERV1 -9 489 1 1134 50 0 0 chr11 114602911 114603050 -34180422 + L1PA3 LINE L1 6014 6152 -3 370 303 86 7 chr11 114603443 114603595 -34179877 + MIR SINE MIR 50 213 -49 205 185 12 49 chr11 114604235 114604316 -34179156 + (TA)n Simple_repeat Simple_repeat 2 79 0 480 231 0 32 chr11 114604329 114604515 -34178957 + (TA)n Simple_repeat Simple_repeat 1 180 0 1284 239 104 5 chr11 114604575 114604990 -34178482 + Charlie7 DNA MER1_type 726 1181 -1431 536 280 131 24 chr11 114605572 114606037 -34177435 + Charlie7 DNA MER1_type 1181 1695 -917 25 31 0 0 chr11 114606064 114606096 -34177376 + AT_rich Low_complexity Low_complexity 1 32 0 2131 244 101 30 chr11 114606232 114607352 -34176120 + L1ME1 LINE L1 4963 6158 -8 432 266 31 10 chr11 114607381 114607573 -34175899 + L1MEc LINE L1 2108 2303 -4093 * 723 56 0 0 chr11 114607569 114607658 -34175814 - L1PA6 LINE L1 -258 5896 5808 2023 96 0 0 chr11 114607658 114607938 -34175534 + L1PA7 LINE L1 5862 6141 -13 2210 288 90 17 chr11 114607940 114609370 -34174102 + L1MEc LINE L1 2243 3885 -2330 326 164 213 8 chr11 114609385 114609507 -34173965 + L1M4 LINE L1 5160 5306 -840 2859 193 26 23 chr11 114609508 114610027 -34173445 + L1MC3 LINE L1 7159 7682 -103 6301 132 59 32 chr11 114610027 114610966 -34172506 + Tigger3b DNA MER2_type 1 982 -2046 2523 52 3 0 chr11 114610966 114611274 -34172198 - AluY SINE Alu 0 311 3 6301 132 59 32 chr11 114611274 114611532 -34171940 + Tigger3b DNA MER2_type 982 1231 0 2859 193 26 23 chr11 114611532 114611629 -34171843 + L1MC3 LINE L1 7682 7777 -8 282 274 28 38 chr11 114611697 114611803 -34171669 - L1ME4a LINE L1 -71 6050 5946 1905 125 51 3 chr11 114611902 114612198 -34171274 - AluJb SINE Alu -2 310 1 24 85 0 0 chr11 114612317 114612376 -34171096 + AT_rich Low_complexity Low_complexity 1 59 0 4219 159 20 25 chr11 114612648 114613777 -34169695 - L1MA5A LINE L1 -282 6015 4893 275 232 165 26 chr11 114614031 114614225 -34169247 - L1ME4a LINE L1 -244 5877 5657 316 283 50 25 chr11 114614395 114614515 -34168957 - L1ME4a LINE L1 -687 5434 5312 21 0 0 0 chr11 114614572 114614593 -34168879 + AT_rich Low_complexity Low_complexity 1 21 0 341 206 0 0 chr11 114615609 114615672 -34167800 + MLT1B LTR MaLR 328 390 0 518 328 46 5 chr11 114615858 114616053 -34167419 - L3 LINE CR1 -814 763 561 2084 113 13 7 chr11 114617698 114617998 -34165474 + AluSx SINE Alu 1 302 -10 225 65 0 0 chr11 114618825 114618856 -34164616 + (CA)n Simple_repeat Simple_repeat 2 32 0 225 254 0 0 chr11 114621251 114621322 -34162150 + (TA)n Simple_repeat Simple_repeat 2 72 0 365 71 36 0 chr11 114621505 114621561 -34161911 + (TTCC)n Simple_repeat Simple_repeat 2 59 0 449 355 94 25 chr11 114621570 114622018 -34161454 - L1MC/D LINE L1 -2075 5733 5255 1856 242 36 7 chr11 114622225 114622775 -34160697 + L1M4 LINE L1 2163 2728 -3418 616 163 54 0 chr11 114622772 114622901 -34160571 + L1MC3 LINE L1 7649 7784 -1 * 21 0 0 0 chr11 114622991 114623012 -34160460 + AT_rich Low_complexity Low_complexity 1 21 0 21 89 0 0 chr11 114623136 114623192 -34160280 + AT_rich Low_complexity Low_complexity 1 56 0 2298 162 36 12 chr11 114623215 114623634 -34159838 + MSTB1 LTR MaLR 1 429 -3 360 200 0 0 chr11 114624768 114624848 -34158624 + CT-rich Low_complexity Low_complexity 2 81 0 538 332 127 27 chr11 114626297 114626921 -34156551 + L2 LINE L2 1815 2500 -814 267 279 89 58 chr11 114626980 114627170 -34156302 + Charlie7 DNA MER1_type 99 294 -2318 1125 248 108 37 chr11 114627187 114628030 -34155442 + Charlie7 DNA MER1_type 1428 2358 -254 204 190 35 0 chr11 114628212 114628270 -34155202 + (TA)n Simple_repeat Simple_repeat 2 61 0 2184 119 3 0 chr11 114628680 114628982 -34154490 - AluSx SINE Alu -9 303 1 372 143 0 0 chr11 114630253 114630323 -34153149 + (TCCC)n Simple_repeat Simple_repeat 1 70 0 1881 143 7 0 chr11 114630323 114630610 -34152862 - AluSq SINE Alu -24 289 1 428 289 56 44 chr11 114630827 114631007 -34152465 + MIR SINE MIR 20 201 -61 1948 112 3 13 chr11 114631388 114631693 -34151779 - AluY SINE Alu -8 303 2 3630 242 73 29 chr11 114632917 114633424 -34150048 + L1MC3 LINE L1 6447 6930 -855 2553 91 101 0 chr11 114633424 114633820 -34149652 + L1PA13 LINE L1 5723 6158 -5 3630 242 73 29 chr11 114633820 114634594 -34148878 + L1MC3 LINE L1 6930 7785 0 185 313 15 15 chr11 114635074 114635141 -34148331 - MIR SINE MIR -148 114 48 276 325 155 39 chr11 114635287 114635493 -34147979 + MIR SINE MIR 23 252 -10 220 317 73 0 chr11 114635512 114635594 -34147878 + L2 LINE L2 3214 3301 -12 265 186 17 25 chr11 114635598 114635716 -34147756 + (TA)n Simple_repeat Simple_repeat 2 118 0 312 137 0 0 chr11 114638326 114638377 -34145095 + (T)n Simple_repeat Simple_repeat 1 51 0 180 158 0 0 chr11 114640096 114640134 -34143338 + T-rich Low_complexity Low_complexity 3 40 0 23 33 0 0 chr11 114641538 114641568 -34141904 + AT_rich Low_complexity Low_complexity 1 30 0 31 26 0 0 chr11 114641655 114641693 -34141779 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr11 114641867 114641897 -34141575 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr11 114643103 114643126 -34140346 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr11 114644032 114644061 -34139411 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr11 114644594 114644631 -34138841 + AT_rich Low_complexity Low_complexity 1 37 0 201 196 0 0 chr11 114644724 114644775 -34138697 + (TA)n Simple_repeat Simple_repeat 1 51 0 338 287 83 65 chr11 114645197 114645427 -34138045 - L2 LINE L2 0 3313 3080 603 345 102 40 chr11 114645516 114646475 -34136997 - L2 LINE L2 -337 2977 1959 253 311 193 0 chr11 114646669 114646804 -34136668 + MIR SINE MIR 28 188 -74 34 42 0 0 chr11 114646898 114646946 -34136526 + AT_rich Low_complexity Low_complexity 1 48 0 431 284 26 32 chr11 114647583 114647738 -34135734 + L2 LINE L2 1863 2016 -1298 669 334 83 5 chr11 114649032 114649418 -34134054 - L1MC4a LINE L1 -1976 5832 5417 303 306 59 33 chr11 114649514 114649785 -34133687 - L1MC4a LINE L1 -859 5287 5010 346 292 66 116 chr11 114650037 114650174 -34133298 + L2 LINE L2 2469 2611 -703 2914 169 27 6 chr11 114650174 114650541 -34132931 - L1PB4 LINE L1 0 6156 5772 342 0 0 0 chr11 114650541 114650579 -34132893 + (TA)n Simple_repeat Simple_repeat 1 38 0 2914 169 27 6 chr11 114650579 114650761 -34132711 - L1PB4 LINE L1 -384 5772 5595 346 292 66 116 chr11 114650761 114651030 -34132442 + L2 LINE L2 2611 2855 -459 521 309 66 58 chr11 114651059 114651437 -34132035 + L2 LINE L2 2933 3313 0 204 169 68 0 chr11 114652382 114652441 -34131031 + (TA)n Simple_repeat Simple_repeat 1 63 0 182 157 0 39 chr11 114652602 114652653 -34130819 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 221 372 43 0 chr11 114652655 114652749 -34130723 + L2 LINE L2 3138 3235 -37 352 299 68 124 chr11 114652862 114653330 -34130142 - L3 LINE CR1 -269 1308 867 216 97 0 0 chr11 114653745 114653776 -34129696 + (CA)n Simple_repeat Simple_repeat 1 31 0 303 294 157 24 chr11 114653792 114654040 -34129432 + L1MC/D LINE L1 5315 5595 -2213 21 36 0 0 chr11 114654262 114654290 -34129182 + AT_rich Low_complexity Low_complexity 1 28 0 246 32 0 0 chr11 114655574 114655605 -34127867 + (CA)n Simple_repeat Simple_repeat 2 32 0 2096 112 83 9 chr11 114655857 114656206 -34127266 + THE1C LTR MaLR 1 375 0 753 80 0 0 chr11 114656408 114656508 -34126964 + L1P LINE L1 4226 4325 -1821 875 144 72 41 chr11 114656526 114656720 -34126752 + AluJo SINE Alu 83 282 -30 410 36 18 0 chr11 114656725 114656781 -34126691 + (TAAA)n Simple_repeat Simple_repeat 2 58 0 249 299 142 88 chr11 114657547 114657751 -34125721 + L2 LINE L2 3026 3240 -32 2090 126 3 0 chr11 114657771 114658072 -34125400 + AluSg SINE Alu 1 302 -8 46 19 0 0 chr11 114658175 114658228 -34125244 + AT_rich Low_complexity Low_complexity 1 53 0 409 293 30 30 chr11 114659941 114660074 -34123398 + MIR SINE MIR 20 152 -110 645 196 30 8 chr11 114660142 114660275 -34123197 + AluJo SINE Alu 1 136 -176 270 306 105 57 chr11 114660836 114660960 -34122512 + L2 LINE L2 3123 3252 -20 405 283 35 9 chr11 114661421 114661534 -34121938 + MIR SINE MIR 66 181 -81 2079 127 0 19 chr11 114661554 114662040 -34121432 + AluSg SINE Alu 1 480 0 22 35 0 0 chr11 114664799 114664828 -34118644 + AT_rich Low_complexity Low_complexity 1 29 0 394 368 24 0 chr11 114664959 114665125 -34118347 - L2 LINE L2 -15 3298 3129 272 86 52 17 chr11 114665439 114665497 -34117975 - L1MA8 LINE L1 0 6291 6232 279 79 0 0 chr11 114666016 114666054 -34117418 + (TG)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chr11 114667823 114667846 -34115626 + AT_rich Low_complexity Low_complexity 1 23 0 250 301 97 0 chr11 114668177 114668270 -34115202 - L1ME LINE L1 -515 5606 5505 2279 139 40 8 chr11 114669291 114669712 -34113760 - MLT1B LTR MaLR 0 467 1 243 0 0 0 chr11 114670025 114670052 -34113420 + (A)n Simple_repeat Simple_repeat 1 27 0 2451 110 28 3 chr11 114670324 114670688 -34112784 - THE1C LTR MaLR -2 373 1 410 349 42 34 chr11 114670794 114671058 -34112414 - L3 LINE CR1 -911 666 401 2054 133 0 0 chr11 114671205 114671507 -34111965 - AluSx SINE Alu -10 302 1 1625 164 3 43 chr11 114671798 114672097 -34111375 + AluSx SINE Alu 1 287 -25 30 0 0 0 chr11 114672098 114672128 -34111344 + AT_rich Low_complexity Low_complexity 1 30 0 256 335 65 29 chr11 114673401 114673741 -34109731 + HAL1b LINE L1 313 664 -684 779 153 15 0 chr11 114673804 114673935 -34109537 + AluJo SINE Alu 5 137 -175 5226 130 16 19 chr11 114673942 114675313 -34108159 + L1PA13 LINE L1 4670 6023 -140 766 191 0 0 chr11 114675313 114675444 -34108028 + AluJb SINE Alu 149 279 -33 297 0 0 0 chr11 114675448 114675481 -34107991 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 21 36 0 0 chr11 114675551 114675579 -34107893 + AT_rich Low_complexity Low_complexity 1 28 0 42 71 0 0 chr11 114675870 114675954 -34107518 + AT_rich Low_complexity Low_complexity 1 84 0 203 332 5 15 chr11 114676039 114676175 -34107297 + GA-rich Low_complexity Low_complexity 3 189 0 401 319 126 25 chr11 114676183 114676276 -34107196 - MIR SINE MIR 0 262 180 477 76 0 130 chr11 114676276 114676368 -34107104 + MADE1 DNA Mariner 1 80 0 401 319 126 25 chr11 114676368 114676512 -34106960 - MIR SINE MIR -82 180 1 270 330 9 0 chr11 114677163 114677269 -34106203 + L1ME4a LINE L1 5517 5623 -498 346 266 31 87 chr11 114677310 114677539 -34105933 + L1ME4a LINE L1 5706 5921 -200 22 0 0 0 chr11 114677946 114677968 -34105504 + AT_rich Low_complexity Low_complexity 1 22 0 292 279 44 104 chr11 114678081 114678264 -34105208 - MER5A DNA MER1_type -1 188 17 211 256 256 12 chr11 114678824 114678910 -34104562 + MER5A DNA MER1_type 7 113 -76 488 213 0 21 chr11 114680213 114680307 -34103165 - Tigger7 DNA MER2_type -3 2488 2397 * 2215 224 71 8 chr11 114680298 114680384 -34103088 - Tigger7 DNA MER2_type -1961 526 447 2263 89 0 13 chr11 114680384 114680699 -34102773 - AluY SINE Alu 0 311 1 2215 224 71 8 chr11 114680699 114681107 -34102365 - Tigger7 DNA MER2_type -2040 447 1 194 325 52 13 chr11 114681265 114681342 -34102130 - L2 LINE L2 -215 3057 2978 1522 159 102 125 chr11 114681438 114681911 -34101561 + L1MA8 LINE L1 5762 6223 -68 21 36 0 0 chr11 114681911 114681939 -34101533 + AT_rich Low_complexity Low_complexity 1 28 0 6837 65 12 0 chr11 114682828 114683717 -34099755 - L1PA7 LINE L1 0 6154 5255 2841 86 2 5 chr11 114683716 114684124 -34099348 + L1PA7 LINE L1 4847 5253 -893 * 790 81 9 0 chr11 114684758 114684869 -34098603 + L1PB1 LINE L1 6039 6150 -1 22 56 0 0 chr11 114684892 114684928 -34098544 + AT_rich Low_complexity Low_complexity 1 36 0 380 183 49 0 chr11 114685363 114685445 -34098027 + L1MC1 LINE L1 6248 6333 0 518 331 124 8 chr11 114686777 114687149 -34096323 + MLT1L LTR MaLR 194 608 -7 790 287 135 50 chr11 114687152 114688003 -34095469 + HAL1 LINE L1 745 1667 -840 411 271 46 95 chr11 114688865 114689253 -34094219 + L1MC5 LINE L1 7498 7866 -95 273 29 0 0 chr11 114689480 114689514 -34093958 + (TG)n Simple_repeat Simple_repeat 1 34 0 336 333 40 8 chr11 114689721 114689847 -34093625 - MIR SINE MIR -120 142 13 24 32 0 0 chr11 114690734 114690765 -34092707 + AT_rich Low_complexity Low_complexity 1 31 0 370 330 89 92 chr11 114690836 114691184 -34092288 - L2 LINE L2 0 3272 2926 198 289 48 48 chr11 114691469 114691573 -34091899 + MIR SINE MIR 146 249 -13 * 247 283 104 28 chr11 114691564 114691670 -34091802 - L2 LINE L2 -10 3303 3190 290 316 126 59 chr11 114691677 114692013 -34091459 - L2 LINE L2 -255 3058 2684 494 320 87 0 chr11 114692741 114692947 -34090525 - MIR SINE MIR -27 235 12 25 31 0 0 chr11 114693689 114693721 -34089751 + AT_rich Low_complexity Low_complexity 1 32 0 27 73 0 0 chr11 114694060 114694115 -34089357 + AT_rich Low_complexity Low_complexity 1 55 0 2476 159 36 38 chr11 114695159 114695681 -34087791 - L1MA9 LINE L1 0 6312 5792 195 42 0 0 chr11 114695681 114695705 -34087767 + (CA)n Simple_repeat Simple_repeat 1 24 0 * 258 0 47 23 chr11 114695704 114695747 -34087725 + (TA)n Simple_repeat Simple_repeat 2 45 0 1701 185 3 16 chr11 114695845 114696159 -34087313 - L1MA9 LINE L1 -517 5795 5486 368 113 0 0 chr11 114696159 114696221 -34087251 - Alu SINE Alu 0 300 239 349 188 45 68 chr11 114696221 114696374 -34087098 - L1MA9 LINE L1 -911 5235 5085 311 333 143 34 chr11 114696394 114696806 -34086666 + L2 LINE L2 2256 2712 -602 24 0 0 0 chr11 114697567 114697591 -34085881 + AT_rich Low_complexity Low_complexity 1 24 0 1942 206 53 25 chr11 114698249 114698738 -34084734 - MLT1D LTR MaLR 0 505 3 2349 103 0 3 chr11 114698881 114699191 -34084281 + AluSx SINE Alu 1 309 -3 312 288 24 40 chr11 114699326 114699451 -34084021 + MER5A DNA MER1_type 57 179 -10 23 0 0 0 chr11 114699636 114699659 -34083813 + AT_rich Low_complexity Low_complexity 1 23 0 33 0 0 0 chr11 114700391 114700424 -34083048 + AT_rich Low_complexity Low_complexity 1 33 0 223 359 21 47 chr11 114700447 114700639 -34082833 + L2 LINE L2 2684 2870 -444 33 0 0 0 chr11 114701263 114701296 -34082176 + AT_rich Low_complexity Low_complexity 1 33 0 226 355 21 0 chr11 114703501 114703594 -34079878 - L2 LINE L2 0 3313 3219 328 318 66 40 chr11 114703662 114703936 -34079536 + L1MC/D LINE L1 5528 5808 -2000 21 36 0 0 chr11 114704545 114704573 -34078899 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 114704639 114704661 -34078811 + AT_rich Low_complexity Low_complexity 1 22 0 465 338 7 35 chr11 114705414 114705559 -34077913 + L2 LINE L2 3127 3267 -5 1693 242 49 3 chr11 114706498 114706883 -34076589 - MLT2D LTR ERVL -8 406 4 6143 178 61 16 chr11 114706885 114708092 -34075380 - ERVL-D LTR ERVL -7 5757 4496 334 266 110 9 chr11 114708970 114709032 -34074440 + L2 LINE L2 3191 3245 -68 1270 193 65 10 chr11 114709032 114709247 -34074225 + MER33 DNA MER1_type 1 203 -2382 1837 148 11 0 chr11 114709247 114709525 -34073947 + AluSx SINE Alu 1 281 -31 213 39 0 0 chr11 114709528 114709554 -34073918 + (TAA)n Simple_repeat Simple_repeat 3 28 0 1270 193 65 10 chr11 114709554 114709640 -34073832 + MER33 DNA MER1_type 204 323 -1 334 266 110 9 chr11 114709640 114709686 -34073786 + L2 LINE L2 3245 3310 -3 861 212 36 0 chr11 114709703 114709868 -34073604 - FAM SINE Alu -1 174 4 31 26 0 0 chr11 114710766 114710804 -34072668 + AT_rich Low_complexity Low_complexity 1 38 0 2115 103 7 0 chr11 114711370 114711660 -34071812 - AluSx SINE Alu -20 292 1 331 154 32 8 chr11 114712019 114712142 -34071330 + (TA)n Simple_repeat Simple_repeat 2 127 0 609 133 0 0 chr11 114712602 114712700 -34070772 + (GGGA)n Simple_repeat Simple_repeat 4 101 0 5527 158 20 3 chr11 114714166 114715273 -34068199 - L1PA16 LINE L1 -1 6165 5048 399 138 0 0 chr11 114716213 114716300 -34067172 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 2213 55 0 17 chr11 114716379 114716700 -34066772 + AluY SINE Alu 1 316 0 265 348 34 0 chr11 114716716 114716834 -34066638 - L2 LINE L2 0 3313 3192 267 298 105 16 chr11 114717000 114717124 -34066348 - L2 LINE L2 -245 3068 2934 494 158 12 0 chr11 114719622 114719704 -34063768 + MIR SINE MIR 113 195 -67 2166 114 7 0 chr11 114719758 114720066 -34063406 + AluSq SINE Alu 1 310 -3 198 209 0 0 chr11 114720224 114720267 -34063205 + (ATG)n Simple_repeat Simple_repeat 2 44 0 195 308 77 0 chr11 114720273 114720351 -34063121 - MIR SINE MIR 0 262 179 706 233 171 0 chr11 114721867 114722043 -34061429 + MER58A DNA MER1_type 1 206 -18 937 174 54 63 chr11 114722207 114722249 -34061223 - Charlie5 DNA MER1_type -44 2580 2539 2175 99 3 3 chr11 114722249 114722542 -34060930 - AluSc SINE Alu -16 293 1 937 174 54 63 chr11 114722542 114722815 -34060657 - Charlie5 DNA MER1_type -85 2539 2268 422 114 0 14 chr11 114722880 114722950 -34060522 - MER3 DNA MER1_type -47 162 94 263 341 122 16 chr11 114723063 114723186 -34060286 - MIR3 SINE MIR -71 137 2 585 100 0 0 chr11 114723529 114723619 -34059853 + (TG)n Simple_repeat Simple_repeat 2 91 0 224 336 29 19 chr11 114724420 114724524 -34058948 + L2 LINE L2 3208 3312 -1 23 0 0 0 chr11 114724642 114724665 -34058807 + AT_rich Low_complexity Low_complexity 1 23 0 2049 138 3 3 chr11 114724862 114725159 -34058313 - AluSx SINE Alu -15 297 1 181 254 14 70 chr11 114725748 114725819 -34057653 - L2 LINE L2 0 3313 3247 21 36 0 0 chr11 114726304 114726332 -34057140 + AT_rich Low_complexity Low_complexity 1 28 0 298 253 11 63 chr11 114727258 114727353 -34056119 - L2 LINE L2 0 3313 3224 261 288 106 38 chr11 114727621 114727753 -34055719 + L2 LINE L2 3124 3264 -49 1220 240 66 53 chr11 114727759 114728138 -34055334 + L2 LINE L2 2930 3313 0 591 321 83 14 chr11 114728694 114728971 -34054501 + L2 LINE L2 2411 2706 -608 317 325 12 0 chr11 114729338 114729421 -34054051 + L2 LINE L2 3189 3272 0 1368 158 69 20 chr11 114730048 114730295 -34053177 - AluJo SINE Alu -30 282 24 25 0 0 0 chr11 114730375 114730400 -34053072 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr11 114730534 114730558 -34052914 + AT_rich Low_complexity Low_complexity 1 24 0 28 29 0 0 chr11 114730632 114730667 -34052805 + AT_rich Low_complexity Low_complexity 1 35 0 279 262 0 0 chr11 114730701 114730762 -34052710 - MIR SINE MIR -22 240 180 1927 157 7 0 chr11 114730780 114731079 -34052393 - AluSx SINE Alu 0 312 12 193 324 15 15 chr11 114731079 114731147 -34052325 - MIR SINE MIR -150 112 45 309 346 47 61 chr11 114732352 114732566 -34050906 - L2 LINE L2 -191 3081 2871 1950 280 53 35 chr11 114732749 114734237 -34049235 + L1MC4a LINE L1 4377 5344 -802 4049 209 101 83 chr11 114736299 114737761 -34045711 + L1MC4a LINE L1 5904 7390 -418 28 48 0 0 chr11 114738171 114738213 -34045259 + AT_rich Low_complexity Low_complexity 1 42 0 251 241 112 102 chr11 114738716 114738903 -34044569 + MIR SINE MIR 20 208 -54 27 0 0 0 chr11 114739284 114739311 -34044161 + AT_rich Low_complexity Low_complexity 1 27 0 510 46 0 0 chr11 114739311 114739376 -34044096 - L1PA4 LINE L1 -172 5983 5919 1240 57 0 0 chr11 114739376 114739531 -34043941 + L1PA4 LINE L1 5994 6152 -3 293 288 78 61 chr11 114739890 114740088 -34043384 + MIR SINE MIR 34 246 -16 26 109 0 0 chr11 114740125 114740235 -34043237 + AT_rich Low_complexity Low_complexity 1 110 0 273 20 0 61 chr11 114740768 114740817 -34042655 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 22 0 0 0 chr11 114741164 114741186 -34042286 + AT_rich Low_complexity Low_complexity 1 22 0 1800 160 7 0 chr11 114741195 114741488 -34041984 + AluSx SINE Alu 1 295 -17 34 84 0 0 chr11 114742290 114742373 -34041099 + AT_rich Low_complexity Low_complexity 1 83 0 216 67 0 0 chr11 114742899 114742929 -34040543 + (TG)n Simple_repeat Simple_repeat 2 31 0 437 304 130 9 chr11 114743842 114744072 -34039400 - MLT1J2 LTR MaLR -114 336 79 1507 11 0 6 chr11 114745798 114745975 -34037497 - L1PA3 LINE L1 0 6155 5980 997 98 0 13 chr11 114745975 114746128 -34037344 + L1PA3 LINE L1 5795 5945 -210 489 301 138 35 chr11 114748253 114748679 -34034793 + Charlie8 DNA MER1_type 85 554 -1863 256 196 0 18 chr11 114750277 114750333 -34033139 + Tigger5 DNA MER2_type 1 55 -2268 * 376 248 38 0 chr11 114750325 114750430 -34033042 + Tigger5 DNA MER2_type 2215 2323 0 462 196 0 21 chr11 114750473 114750570 -34032902 + Tigger5 DNA MER2_type 2229 2323 0 263 343 10 2 chr11 114750647 114750754 -34032718 - L1ME LINE L1 -551 5573 5461 26 0 0 0 chr11 114751473 114751499 -34031973 + AT_rich Low_complexity Low_complexity 1 26 0 2310 149 67 52 chr11 114751908 114752419 -34031053 + L1PB4 LINE L1 5264 5785 -371 195 114 0 0 chr11 114752419 114752454 -34031018 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 2310 149 67 52 chr11 114752454 114752466 -34031006 + L1PB4 LINE L1 5785 5795 -361 195 204 0 0 chr11 114752473 114752517 -34030955 + (CA)n Simple_repeat Simple_repeat 2 45 0 1816 182 11 25 chr11 114752517 114752880 -34030592 + L1PB4 LINE L1 5789 6146 -10 616 244 90 13 chr11 114753042 114753198 -34030274 + MIR SINE MIR 18 185 -77 448 272 47 31 chr11 114753310 114753501 -34029971 - LTR67 LTR ERVL -14 543 350 29581 117 16 58 chr11 114753692 114760124 -34023348 + L1PA7 LINE L1 6 6153 -1 458 218 37 75 chr11 114760667 114760845 -34022627 - LTR41 LTR ERVL -608 187 1 * 466 320 33 0 chr11 114760845 114760987 -34022485 - LTR67 LTR ERVL -408 149 3 2017 121 10 3 chr11 114761541 114761839 -34021633 - AluSg SINE Alu -10 300 1 1305 106 11 0 chr11 114761940 114762120 -34021352 + AluSg/x SINE Alu 113 294 -16 3764 29 0 0 chr11 114762189 114762635 -34020837 - L1PA4 LINE L1 -3 6152 5707 1801 78 0 145 chr11 114762635 114762945 -34020527 + L1P LINE L1 4435 4606 -1540 913 0 0 9 chr11 114762945 114763048 -34020424 + L1PA2 LINE L1 6048 6153 -2 1801 78 0 145 chr11 114763048 114763182 -34020290 + L1P LINE L1 4606 4758 -1388 21 71 0 0 chr11 114763991 114764033 -34019439 + AT_rich Low_complexity Low_complexity 1 42 0 219 69 0 0 chr11 114766337 114766366 -34017106 + (CATA)n Simple_repeat Simple_repeat 2 30 0 426 39 0 0 chr11 114767146 114767198 -34016274 + (TG)n Simple_repeat Simple_repeat 1 52 0 512 295 49 33 chr11 114767385 114767568 -34015904 + MIR SINE MIR 41 226 -36 288 290 43 21 chr11 114768295 114768388 -34015084 - MER5A DNA MER1_type -78 111 17 276 252 7 34 chr11 114768397 114768543 -34014929 - MIR SINE MIR 0 262 20 185 319 150 18 chr11 114768593 114768706 -34014766 + MIR SINE MIR 105 232 -30 2034 125 6 3 chr11 114769266 114769577 -34013895 + AluSx SINE Alu 1 312 0 492 365 58 23 chr11 114769681 114770023 -34013449 + L2 LINE L2 2514 2867 -447 247 283 120 11 chr11 114770222 114770314 -34013158 + L2 LINE L2 3208 3309 -4 21 89 0 0 chr11 114770691 114770747 -34012725 + AT_rich Low_complexity Low_complexity 1 56 0 288 352 0 0 chr11 114771023 114771111 -34012361 + MIR3 SINE MIR 88 175 -33 541 314 20 48 chr11 114771392 114771640 -34011832 + MER102b DNA MER1_type 79 319 -22 335 360 50 22 chr11 114773134 114773356 -34010116 + MIR SINE MIR 22 249 -13 362 306 14 83 chr11 114773682 114773826 -34009646 - L2 LINE L2 -5 3267 3134 189 94 0 0 chr11 114774272 114774304 -34009168 + (A)n Simple_repeat Simple_repeat 1 32 0 209 194 0 0 chr11 114774356 114774392 -34009080 + CT-rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr11 114774551 114774581 -34008891 + AT_rich Low_complexity Low_complexity 1 30 0 189 94 0 0 chr11 114774596 114774628 -34008844 + (A)n Simple_repeat Simple_repeat 1 32 0 736 324 152 23 chr11 114776119 114777291 -34006181 - L2 LINE L2 -2 3311 1983 247 174 116 43 chr11 114777449 114777518 -34005954 - L1MA9 LINE L1 -38 6274 6201 * 792 198 109 0 chr11 114777493 114777698 -34005774 + L1MA9 LINE L1 5935 6167 -1 259 336 17 50 chr11 114777719 114777838 -34005634 - L2 LINE L2 -2 3311 3197 209 331 70 6 chr11 114778057 114778214 -34005258 + L2 LINE L2 1528 1694 -1620 249 289 0 0 chr11 114778218 114778315 -34005157 + (TA)n Simple_repeat Simple_repeat 1 97 0 1829 125 0 0 chr11 114778450 114778706 -34004766 - AluSx SINE Alu -43 269 14 378 307 67 109 chr11 114779256 114779735 -34003737 + L2 LINE L2 2231 2689 -625 276 352 57 69 chr11 114779736 114779983 -34003489 + L2 LINE L2 3029 3272 0 197 108 27 0 chr11 114780840 114780877 -34002595 + (TAA)n Simple_repeat Simple_repeat 2 39 0 962 320 28 51 chr11 114782540 114783112 -34000360 + L1MEd LINE L1 280 838 -5281 366 245 56 73 chr11 114783342 114783575 -33999897 + L1ME LINE L1 5531 5759 -362 374 248 78 0 chr11 114783719 114783835 -33999637 - MLT1G1 LTR MaLR -13 582 406 837 251 126 69 chr11 114783894 114784063 -33999409 - MLT1G1 LTR MaLR -232 363 205 2121 84 7 17 chr11 114784063 114784362 -33999110 - AluSq SINE Alu -17 296 1 837 251 126 69 chr11 114784362 114784526 -33998946 - MLT1G1 LTR MaLR -390 205 11 502 342 169 13 chr11 114784547 114785143 -33998329 - L2 LINE L2 -1018 2296 1608 24 0 0 0 chr11 114786269 114786293 -33997179 + AT_rich Low_complexity Low_complexity 1 24 0 3540 199 83 27 chr11 114789147 114789958 -33993514 - MER21B LTR ERV1 -2 861 6 2638 174 13 66 chr11 114791250 114791783 -33991689 + MLT2B1 LTR ERVL 1 505 -15 25 65 0 0 chr11 114793593 114793639 -33989833 + AT_rich Low_complexity Low_complexity 1 46 0 1591 188 4 4 chr11 114793639 114793915 -33989557 + AluJo SINE Alu 1 276 -36 248 328 0 0 chr11 114794645 114794712 -33988760 + MIR SINE MIR 45 111 -151 387 350 133 54 chr11 114795065 114795585 -33987887 + L2 LINE L2 2704 3272 0 233 373 121 16 chr11 114795582 114796035 -33987437 + L2 LINE L2 2194 2694 -620 * 248 350 35 22 chr11 114796115 114796341 -33987131 - L1M4 LINE L1 -2481 3665 3437 522 309 52 73 chr11 114796393 114796970 -33986502 - L1M4 LINE L1 -3344 2802 2238 410 219 123 62 chr11 114796998 114797144 -33986328 - MIR SINE MIR -48 214 60 1003 227 0 46 chr11 114797144 114797159 -33986313 - MER58 DNA MER1_type -82 259 245 198 0 0 0 chr11 114797159 114797181 -33986291 + (CAACT)n Simple_repeat Simple_repeat 5 26 0 1003 227 0 46 chr11 114797181 114797425 -33986047 - MER58 DNA MER1_type -96 245 12 2129 128 0 0 chr11 114797621 114797918 -33985554 - AluSx SINE Alu -15 297 1 2202 94 80 6 chr11 114798157 114798496 -33984976 + THE1B LTR MaLR 1 364 0 194 0 0 37 chr11 114799712 114799739 -33983733 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1530 87 0 19 chr11 114799742 114799948 -33983524 - AluSc SINE Alu -23 286 85 820 224 46 27 chr11 114801229 114801448 -33982024 + MER58A DNA MER1_type 1 223 -1 639 298 117 29 chr11 114802286 114802721 -33980751 + L2 LINE L2 2716 3308 -5 720 298 36 0 chr11 114803240 114803492 -33979980 - MIR SINE MIR 0 262 2 224 260 135 19 chr11 114804698 114804802 -33978670 + L2 LINE L2 3152 3267 -5 251 317 151 35 chr11 114804865 114805124 -33978348 - L2 LINE L2 -171 3101 2813 248 259 0 0 chr11 114807201 114807259 -33976213 + L1MC4 LINE L1 7815 7872 -170 3983 150 72 0 chr11 114807280 114807974 -33975498 + Tigger2 DNA MER2_type 1 744 -1974 538 176 59 3 chr11 114808038 114808233 -33975239 + Tigger2 DNA MER2_type 2459 2718 0 231 88 0 0 chr11 114808253 114808287 -33975185 + (CA)n Simple_repeat Simple_repeat 1 34 0 247 248 10 50 chr11 114808319 114808420 -33975052 + L1MC4 LINE L1 7946 8042 0 460 281 20 54 chr11 114808422 114808625 -33974847 + L1M4 LINE L1 2959 3154 -2992 200 189 0 0 chr11 114808687 114808724 -33974748 + CT-rich Low_complexity Low_complexity 3 39 0 429 296 124 49 chr11 114809509 114810059 -33973413 + L1ME LINE L1 2574 3164 -2982 21 0 0 0 chr11 114810224 114810245 -33973227 + AT_rich Low_complexity Low_complexity 1 21 0 1845 228 40 20 chr11 114810459 114810954 -33972518 - MLT1D LTR MaLR 0 505 1 303 380 141 13 chr11 114811194 114811576 -33971896 + L1ME LINE L1 5268 5698 -423 28 0 0 0 chr11 114811580 114811608 -33971864 + AT_rich Low_complexity Low_complexity 1 28 0 281 338 0 0 chr11 114811691 114811771 -33971701 - MIR SINE MIR -109 153 74 316 289 22 0 chr11 114812119 114812209 -33971263 + MIR SINE MIR 157 248 -14 203 152 0 0 chr11 114812645 114812678 -33970794 + (CA)n Simple_repeat Simple_repeat 1 33 0 299 195 81 65 chr11 114812714 114812837 -33970635 + L1ME4a LINE L1 5997 6121 0 746 65 19 0 chr11 114814018 114814126 -33969346 + AluSq/x SINE Alu 1 110 -202 216 97 0 0 chr11 114814236 114814267 -33969205 + (A)n Simple_repeat Simple_repeat 1 31 0 226 349 55 41 chr11 114814595 114814741 -33968731 - L2 LINE L2 0 3272 3125 27 0 0 0 chr11 114815312 114815339 -33968133 + AT_rich Low_complexity Low_complexity 1 27 0 258 195 0 0 chr11 114815713 114815754 -33967718 - FAM SINE Alu -18 161 121 3003 162 16 9 chr11 114816415 114816970 -33966502 + L1PB4 LINE L1 5469 6027 -129 195 246 88 0 chr11 114817785 114817842 -33965630 + MIR SINE MIR 81 142 -66 27 29 0 0 chr11 114820625 114820659 -33962813 + AT_rich Low_complexity Low_complexity 1 34 0 220 351 117 0 chr11 114821302 114821396 -33962076 - L2 LINE L2 -9 3263 3159 219 36 0 0 chr11 114822586 114822614 -33960858 + (T)n Simple_repeat Simple_repeat 1 28 0 204 205 26 0 chr11 114822647 114822686 -33960786 + GA-rich Low_complexity Low_complexity 2 41 0 300 91 0 0 chr11 114823139 114823183 -33960289 + (CA)n Simple_repeat Simple_repeat 2 45 0 33 0 0 0 chr11 114823437 114823470 -33960002 + AT_rich Low_complexity Low_complexity 1 33 0 227 0 0 83 chr11 114824280 114824316 -33959156 + (A)n Simple_repeat Simple_repeat 1 33 0 186 43 0 0 chr11 114824461 114824484 -33958988 + (TA)n Simple_repeat Simple_repeat 1 23 0 199 328 69 0 chr11 114824534 114824592 -33958880 - L2 LINE L2 -62 3210 3149 1494 190 34 101 chr11 114824622 114825116 -33958356 + Charlie4a DNA MER1_type 46 506 -2 1535 168 81 0 chr11 114826814 114827099 -33956373 + AluJb SINE Alu 1 308 -4 4239 287 144 38 chr11 114827827 114830164 -33953308 - L2 LINE L2 0 3313 737 321 292 71 18 chr11 114830189 114830302 -33953170 + MIR SINE MIR 67 185 -77 29 78 0 0 chr11 114830635 114830699 -33952773 + AT_rich Low_complexity Low_complexity 1 64 0 28 0 0 0 chr11 114831081 114831109 -33952363 + AT_rich Low_complexity Low_complexity 1 28 0 484 299 51 6 chr11 114831557 114831714 -33951758 + L3 LINE CR1 1311 1474 -103 22 56 0 0 chr11 114832730 114832766 -33950706 + AT_rich Low_complexity Low_complexity 1 36 0 231 321 88 22 chr11 114833066 114833203 -33950269 - MIR SINE MIR -23 239 94 342 0 0 0 chr11 114833707 114833745 -33949727 + (A)n Simple_repeat Simple_repeat 1 38 0 562 281 105 63 chr11 114834558 114835053 -33948419 + HAL1 LINE L1 54 569 -1938 259 283 0 0 chr11 114835053 114835113 -33948359 + HAL1 LINE L1 785 844 -1663 610 233 59 37 chr11 114835160 114835431 -33948041 + HAL1 LINE L1 985 1261 -1246 458 303 40 0 chr11 114835434 114835586 -33947886 + HAL1 LINE L1 1299 1456 -1051 545 245 37 79 chr11 114835722 114835963 -33947509 + HAL1 LINE L1 2246 2476 -31 942 141 28 0 chr11 114837379 114837556 -33945916 + L1MC3 LINE L1 7589 7770 -15 1986 154 3 23 chr11 114837602 114837825 -33945647 - L1MA4 LINE L1 0 6300 6087 1897 100 66 77 chr11 114837825 114838204 -33945268 + THE1C LTR MaLR 1 375 0 1986 154 3 23 chr11 114838204 114838370 -33945102 - L1MA4 LINE L1 -213 6087 5919 724 194 61 17 chr11 114839987 114840167 -33943305 - MER53 DNA DNA 0 189 2 302 342 55 30 chr11 114840785 114840984 -33942488 + MIR SINE MIR 6 209 -53 2375 69 23 7 chr11 114841202 114841506 -33941966 + AluY SINE Alu 1 309 -2 581 211 134 36 chr11 114841606 114841800 -33941672 - AluJo SINE Alu -87 225 13 534 283 104 73 chr11 114842009 114842496 -33940976 - L2 LINE L2 -121 3192 2666 364 289 145 6 chr11 114842714 114842873 -33940599 + MIR SINE MIR 82 262 0 517 292 32 19 chr11 114843100 114843458 -33940014 + MLT1K LTR MaLR 131 543 -45 317 231 181 71 chr11 114844271 114844453 -33939019 + MIR SINE MIR 2 203 -59 2549 139 46 2 chr11 114844459 114844869 -33938603 + MSTA LTR MaLR 1 428 0 1555 171 7 31 chr11 114844951 114845238 -33938234 + AluJo SINE Alu 3 282 -30 647 290 12 12 chr11 114845252 114845421 -33938051 + MIR SINE MIR 23 191 -71 21 36 0 0 chr11 114846721 114846749 -33936723 + AT_rich Low_complexity Low_complexity 1 28 0 620 309 99 0 chr11 114847449 114847650 -33935822 + MIR SINE MIR 32 252 -10 1952 220 22 20 chr11 114847973 114848433 -33935039 + MLT1C LTR MaLR 1 461 -6 273 188 234 0 chr11 114848436 114848500 -33934972 - MIR SINE MIR -112 150 72 197 304 25 25 chr11 114848547 114848626 -33934846 + L2 LINE L2 2835 2913 -359 2315 152 59 12 chr11 114849535 114849943 -33933529 - MSTA LTR MaLR -1 427 1 2030 135 23 55 chr11 114851989 114852388 -33931084 + MLT1B LTR MaLR 5 390 0 1208 227 91 46 chr11 114852392 114852823 -33930649 - HAL1 LINE L1 -25 2482 2033 554 87 0 0 chr11 114852838 114852907 -33930565 + U4 snRNA snRNA 1 69 -76 2042 265 4 26 chr11 114853026 114853562 -33929910 - HERVL40 LTR ERVL -1996 3534 3011 1434 241 76 16 chr11 114853595 114853977 -33929495 - HERVL40 LTR ERVL -2604 2926 2522 1203 258 62 56 chr11 114853976 114854479 -33928993 - HERVL40 LTR ERVL -3919 1611 1106 * 751 205 20 0 chr11 114854504 114854655 -33928817 - HERVL40 LTR ERVL -4780 750 597 1597 258 37 57 chr11 114854728 114855270 -33928202 - HERVL40 LTR ERVL -4960 570 40 387 133 0 0 chr11 114855303 114855363 -33928109 - LTR40b LTR ERVL 0 462 403 24 32 0 0 chr11 114855996 114856027 -33927445 + AT_rich Low_complexity Low_complexity 1 31 0 286 315 74 0 chr11 114857339 114857447 -33926025 - MIR SINE MIR -100 162 47 357 301 102 55 chr11 114858364 114858600 -33924872 - L2 LINE L2 -565 2749 2503 240 35 0 0 chr11 114859167 114859196 -33924276 + (CA)n Simple_repeat Simple_repeat 2 30 0 570 270 197 43 chr11 114859213 114859689 -33923783 - MLT1G1 LTR MaLR -28 527 16 353 260 87 10 chr11 114859976 114860080 -33923392 + MER91C DNA MER1_type 2 113 -27 206 355 99 13 chr11 114860149 114860301 -33923171 - L2 LINE L2 -925 2389 2225 335 214 245 29 chr11 114860688 114860847 -33922625 - MIR SINE MIR -62 146 7 186 405 0 0 chr11 114861363 114861437 -33922035 - L2 LINE L2 -2 3270 3197 236 209 0 0 chr11 114861444 114861487 -33921985 - HAL1b LINE L1 -91 1257 1215 1058 283 47 37 chr11 114861649 114862219 -33921253 - HAL1b LINE L1 -149 1199 624 37 62 0 0 chr11 114863337 114863402 -33920070 + AT_rich Low_complexity Low_complexity 1 65 0 561 264 108 18 chr11 114864827 114864994 -33918478 - MER5A DNA MER1_type -1 188 7 2221 112 27 24 chr11 114865132 114865506 -33917966 - THE1C LTR MaLR 0 375 1 254 230 7 126 chr11 114865727 114865862 -33917610 - L2 LINE L2 -1879 1435 1317 23 54 0 0 chr11 114865959 114865996 -33917476 + AT_rich Low_complexity Low_complexity 1 37 0 698 114 0 0 chr11 114867843 114867948 -33915524 + AluY SINE Alu 204 308 -3 24 53 0 0 chr11 114869445 114869483 -33913989 + AT_rich Low_complexity Low_complexity 1 38 0 256 235 0 0 chr11 114870131 114870182 -33913290 - L2 LINE L2 -1 3312 3262 21 0 0 0 chr11 114870199 114870220 -33913252 + AT_rich Low_complexity Low_complexity 1 21 0 1324 305 69 10 chr11 114870238 114870766 -33912706 - L2 LINE L2 -260 3053 2492 213 300 175 0 chr11 114871342 114871462 -33912010 + MIR3 SINE MIR 60 200 -8 450 226 16 57 chr11 114872233 114872357 -33911115 - MER94 DNA DNA -15 119 1 354 183 0 0 chr11 114872943 114873014 -33910458 + (CTA)n Simple_repeat Simple_repeat 1 71 0 589 257 112 46 chr11 114873116 114873206 -33910266 + MIR SINE MIR 2 85 -177 1283 261 114 28 chr11 114873206 114873751 -33909721 - MLT1G1 LTR MaLR 0 595 4 589 257 112 46 chr11 114873751 114873812 -33909660 + MIR SINE MIR 85 141 -121 2146 76 0 31 chr11 114873812 114874130 -33909342 + AluY SINE Alu 1 309 0 589 257 112 46 chr11 114874130 114874217 -33909255 + MIR SINE MIR 141 258 -4 783 114 121 8 chr11 114875177 114875309 -33908163 - MER1B DNA MER1_type 0 339 193 * 1934 147 51 3 chr11 114875303 114875617 -33907855 - MER1B DNA MER1_type -10 329 1 21 0 0 0 chr11 114876505 114876526 -33906946 + AT_rich Low_complexity Low_complexity 1 21 0 670 277 88 76 chr11 114876824 114877156 -33906316 - LTR33 LTR ERVL -3 518 176 1694 133 11 15 chr11 114877156 114877426 -33906046 + AluSx SINE Alu 37 305 -7 670 277 88 76 chr11 114877426 114877605 -33905867 - LTR33 LTR ERVL -345 176 1 364 230 35 0 chr11 114879196 114879283 -33904189 + MIR SINE MIR 63 152 -110 272 379 47 39 chr11 114879718 114879974 -33903498 - L2 LINE L2 -191 3081 2824 603 270 21 46 chr11 114879986 114880223 -33903249 + L2 LINE L2 3078 3308 -5 356 213 0 0 chr11 114881807 114881882 -33901590 + MER116 DNA Mariner 4 78 -2 183 253 86 111 chr11 114882036 114882198 -33901274 + L2 LINE L2 2605 2762 -552 846 287 84 41 chr11 114882243 114882658 -33900814 - L2 LINE L2 0 3313 2881 695 290 82 11 chr11 114882675 114882954 -33900518 - L2 LINE L2 -560 2754 2456 369 305 75 32 chr11 114883027 114883214 -33900258 + MIR SINE MIR 14 208 -54 314 356 133 14 chr11 114884293 114884638 -33898834 + L2 LINE L2 2537 2922 -392 614 261 47 33 chr11 114884699 114884910 -33898562 - MLT1J LTR MaLR -297 214 1 377 291 48 62 chr11 114885809 114886036 -33897436 + L2 LINE L2 1795 2018 -1296 2815 117 11 13 chr11 114886567 114887021 -33896451 - L1MA3 LINE L1 0 6305 5853 1691 168 17 3 chr11 114888886 114889183 -33894289 + AluSg SINE Alu 1 301 -9 2419 72 3 0 chr11 114892794 114893087 -33890385 + AluSp SINE Alu 1 294 -19 197 299 26 26 chr11 114894391 114894468 -33889004 + MIR3 SINE MIR 127 203 -5 260 27 27 0 chr11 114894629 114894666 -33888806 + (TG)n Simple_repeat Simple_repeat 1 38 0 263 225 14 0 chr11 114894688 114894759 -33888713 + (TA)n Simple_repeat Simple_repeat 1 72 0 261 274 48 0 chr11 114894759 114894821 -33888651 - L2 LINE L2 -36 3236 3172 205 179 30 75 chr11 114895863 114895930 -33887542 + A-rich Low_complexity Low_complexity 2 65 0 226 330 71 109 chr11 114896102 114896553 -33886919 - L2 LINE L2 -14 3258 2825 48 85 0 0 chr11 114898359 114898477 -33884995 + AT_rich Low_complexity Low_complexity 1 118 0 212 240 0 0 chr11 114898574 114898624 -33884848 - L2 LINE L2 -2 3311 3262 184 362 164 17 chr11 114898791 114899089 -33884383 - L2 LINE L2 -338 2976 2635 330 197 248 36 chr11 114899210 114899347 -33884125 - L2 LINE L2 -15 3298 3133 43 0 0 0 chr11 114899659 114899702 -33883770 + AT_rich Low_complexity Low_complexity 1 43 0 401 240 67 0 chr11 114900248 114900352 -33883120 - MER103 DNA DNA -29 137 27 180 182 55 18 chr11 114900595 114900650 -33882822 - MIR3 SINE MIR 0 208 152 22 0 0 0 chr11 114901042 114901064 -33882408 + AT_rich Low_complexity Low_complexity 1 22 0 31995 109 12 52 chr11 114901110 114907523 -33875949 - L1PA7 LINE L1 -3 6151 12 245 384 20 14 chr11 114908570 114908716 -33874756 + MIR3 SINE MIR 3 149 -59 1126 293 60 46 chr11 114909134 114909616 -33873856 - LTR16C LTR ERVL 0 491 3 385 278 40 8 chr11 114909662 114909788 -33873684 - L3 LINE CR1 -56 1521 1392 255 175 0 0 chr11 114909875 114909932 -33873540 + (CA)n Simple_repeat Simple_repeat 2 58 0 198 0 0 0 chr11 114911253 114911275 -33872197 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 5357 44 5 1 chr11 114911457 114912116 -33871356 - L1PA5 LINE L1 0 6154 5494 1090 16 0 0 chr11 114912116 114912244 -33871228 + L1PA5 LINE L1 5364 5491 -663 21 0 0 0 chr11 114912441 114912462 -33871010 + AT_rich Low_complexity Low_complexity 1 21 0 360 240 176 8 chr11 114913557 114913682 -33869790 + L1MEd LINE L1 6 151 -5968 698 286 42 55 chr11 114913783 114914091 -33869381 + L1MEd LINE L1 326 629 -5490 340 303 0 21 chr11 114914086 114914283 -33869189 + L1MEd LINE L1 1167 1252 -4867 * 225 0 0 0 chr11 114914361 114914386 -33869086 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 2361 65 9 15 chr11 114914387 114914725 -33868747 - L1MA1 LINE L1 -9 6293 5958 24 32 0 0 chr11 114915623 114915654 -33867818 + AT_rich Low_complexity Low_complexity 1 31 0 2793 9 0 13 chr11 114916455 114916770 -33866702 - AluYa5 SINE Alu 0 311 1 27 0 0 0 chr11 114917110 114917137 -33866335 + AT_rich Low_complexity Low_complexity 1 27 0 1034 213 138 6 chr11 114917767 114918100 -33865372 + L1M4 LINE L1 4015 4391 -1755 186 238 0 0 chr11 114920012 114920054 -33863418 + L2 LINE L2 3197 3238 -75 24 32 0 0 chr11 114920515 114920546 -33862926 + AT_rich Low_complexity Low_complexity 1 31 0 181 208 75 19 chr11 114922119 114922172 -33861300 + MIR3 SINE MIR 110 165 -43 219 204 0 0 chr11 114922184 114922228 -33861244 + L2 LINE L2 3270 3313 0 23 33 0 0 chr11 114922392 114922422 -33861050 + AT_rich Low_complexity Low_complexity 1 30 0 685 329 24 20 chr11 114922444 114922696 -33860776 + MIR SINE MIR 8 260 -2 210 304 0 0 chr11 114922823 114922869 -33860603 + polypurine Low_complexity Low_complexity 3 48 0 2859 7 0 0 chr11 114922976 114923284 -33860188 - AluYb8 SINE Alu -10 308 1 354 45 0 0 chr11 114923435 114923479 -33859993 + (TG)n Simple_repeat Simple_repeat 1 44 0 264 178 57 70 chr11 114923646 114923803 -33859669 + (TAGA)n Simple_repeat Simple_repeat 3 157 0 261 119 0 0 chr11 114923805 114923847 -33859625 + (GGGA)n Simple_repeat Simple_repeat 3 44 0 7520 196 16 7 chr11 114924010 114926135 -33857337 - L1P4 LINE L1 -405 5761 3620 194 238 0 24 chr11 114927491 114927533 -33855939 - L2 LINE L2 -12 3260 3220 186 327 0 19 chr11 114927730 114927782 -33855690 + L2 LINE L2 3219 3269 -3 3217 219 9 1 chr11 114927787 114928434 -33855038 + MER82 DNA MER2_type 1 652 -1 195 314 149 11 chr11 114928581 114928756 -33854716 + L2 LINE L2 2848 3046 -226 1825 114 38 48 chr11 114928756 114929071 -33854401 - AluSx SINE Alu 0 312 1 492 146 0 0 chr11 114929072 114929154 -33854318 + L1MA3 LINE L1 6068 6149 -156 1993 150 0 13 chr11 114930514 114930828 -33852644 - AluJb SINE Alu -2 310 1 823 283 78 31 chr11 114932371 114932728 -33850744 - MLT1I LTR MaLR -6 403 30 451 301 136 6 chr11 114934321 114934497 -33848975 - MIR SINE MIR 0 262 64 475 334 41 5 chr11 114935900 114936104 -33847368 - MIR SINE MIR -12 250 41 22 56 0 0 chr11 114937194 114937230 -33846242 + AT_rich Low_complexity Low_complexity 1 36 0 543 263 88 56 chr11 114937627 114937878 -33845594 + MIR SINE MIR 4 262 0 23 78 0 0 chr11 114938003 114938054 -33845418 + AT_rich Low_complexity Low_complexity 1 51 0 21 57 0 0 chr11 114939138 114939173 -33844299 + AT_rich Low_complexity Low_complexity 1 35 0 324 0 0 0 chr11 114939975 114940011 -33843461 + (TA)n Simple_repeat Simple_repeat 2 37 0 294 50 0 0 chr11 114940722 114940762 -33842710 + (TA)n Simple_repeat Simple_repeat 1 40 0 538 200 88 16 chr11 114941305 114941430 -33842042 - L2 LINE L2 0 3313 3180 273 205 60 0 chr11 114942202 114942285 -33841187 + (TA)n Simple_repeat Simple_repeat 1 88 0 22 80 0 0 chr11 114942709 114942759 -33840713 + AT_rich Low_complexity Low_complexity 1 50 0 208 185 0 37 chr11 114943275 114943329 -33840143 + (CAAAG)n Simple_repeat Simple_repeat 2 53 0 209 171 0 0 chr11 114943785 114943820 -33839652 - L2 LINE L2 -18 3295 3261 2005 136 0 16 chr11 114944098 114944406 -33839066 + AluSx SINE Alu 1 303 -9 559 289 70 5 chr11 114944418 114944605 -33838867 + MIR SINE MIR 51 249 -13 340 327 45 9 chr11 114944693 114944803 -33838669 + L2 LINE L2 3153 3266 -6 396 0 0 0 chr11 114946012 114946056 -33837416 + (TG)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr11 114946235 114946256 -33837216 + AT_rich Low_complexity Low_complexity 1 21 0 240 397 58 0 chr11 114946355 114946476 -33836996 - L2 LINE L2 0 3272 3145 396 0 0 0 chr11 114949505 114949549 -33833923 + (TG)n Simple_repeat Simple_repeat 2 45 0 185 302 0 19 chr11 114949562 114949615 -33833857 + MER5A DNA MER1_type 2 53 -136 322 268 54 68 chr11 114950092 114950372 -33833100 + L1ME4a LINE L1 5051 5326 -820 615 294 52 29 chr11 114950532 114950875 -33832597 + L1ME4a LINE L1 5533 5883 -238 21 0 0 0 chr11 114951024 114951045 -33832427 + AT_rich Low_complexity Low_complexity 1 21 0 294 270 211 49 chr11 114951573 114951758 -33831714 + MIR SINE MIR 46 260 -2 229 237 140 43 chr11 114951783 114951876 -33831596 - MIR SINE MIR -82 180 79 467 222 7 78 chr11 114954461 114954614 -33828858 - MER104 DNA Tc2 -5 175 34 342 0 0 0 chr11 114959461 114959499 -33823973 + (CA)n Simple_repeat Simple_repeat 2 39 0 2005 117 3 30 chr11 114959617 114959917 -33823555 + AluSx SINE Alu 1 292 -20 1874 141 3 61 chr11 114960326 114960653 -33822819 - AluSx SINE Alu -4 308 1 1739 156 19 41 chr11 114961152 114961467 -33822005 + AluJo SINE Alu 1 308 -4 21 0 0 0 chr11 114961888 114961909 -33821563 + AT_rich Low_complexity Low_complexity 1 21 0 1908 116 9 63 chr11 114968279 114968597 -33814875 + AluSq SINE Alu 3 303 -10 194 286 214 20 chr11 114970716 114970814 -33812658 - MIR SINE MIR -69 139 23 340 283 220 47 chr11 114971022 114971213 -33812259 + L3 LINE CR1 1351 1574 -3 208 301 48 48 chr11 114972909 114972992 -33810480 - MIR SINE MIR -172 90 8 1794 158 0 10 chr11 114974500 114974797 -33808675 + AluJb SINE Alu 6 299 -13 25 0 0 0 chr11 114974799 114974824 -33808648 + AT_rich Low_complexity Low_complexity 1 25 0 41 21 0 0 chr11 114976672 114976720 -33806752 + AT_rich Low_complexity Low_complexity 1 48 0 1924 116 46 30 chr11 114976776 114977079 -33806393 - AluSc SINE Alu -1 308 1 441 267 151 29 chr11 114978008 114978198 -33805274 + MIR SINE MIR 10 192 -58 236 305 156 42 chr11 114979114 114979281 -33804191 + MIR3 SINE MIR 17 202 -6 23 0 0 0 chr11 114979516 114979539 -33803933 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr11 114979832 114979853 -33803619 + AT_rich Low_complexity Low_complexity 1 21 0 1716 146 59 17 chr11 114979884 114980172 -33803300 + AluJb SINE Alu 5 304 -8 309 209 0 0 chr11 114981797 114981864 -33801608 + (CATA)n Simple_repeat Simple_repeat 1 67 0 320 263 120 57 chr11 114982575 114982891 -33800581 - L1ME4a LINE L1 -1 6120 5785 229 97 83 28 chr11 114983098 114983170 -33800302 + (TA)n Simple_repeat Simple_repeat 1 76 0 257 287 11 0 chr11 114983206 114983300 -33800172 - L1ME4a LINE L1 -459 5662 5568 672 145 0 40 chr11 114983321 114983445 -33800027 - L1PA8 LINE L1 0 6172 6054 6378 71 8 0 chr11 114983338 114984304 -33799168 - L1PA8A LINE L1 -12 6119 5157 * 14919 42 2 2 chr11 114984301 114986910 -33796562 - L1PA5 LINE L1 -4 6150 3542 7805 166 14 42 chr11 114986912 114989256 -33794216 - L1P3 LINE L1 -4113 2348 4 233 324 45 34 chr11 114989265 114989441 -33794031 - L1ME4a LINE L1 -2254 5554 5377 895 198 19 34 chr11 114989737 114989944 -33793528 - MER46A DNA MER2_type -28 208 5 2330 96 3 3 chr11 114992980 114993292 -33790180 - AluSq SINE Alu -1 312 1 530 263 258 0 chr11 114998594 114998788 -33784684 + MIR SINE MIR 18 261 -1 213 98 20 78 chr11 114999365 114999416 -33784056 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 22 0 0 0 chr11 115000926 115000948 -33782524 + AT_rich Low_complexity Low_complexity 1 22 0 30 27 0 0 chr11 115001714 115001751 -33781721 + AT_rich Low_complexity Low_complexity 1 37 0 27 49 0 0 chr11 115001790 115001831 -33781641 + AT_rich Low_complexity Low_complexity 1 41 0 249 306 14 0 chr11 115003046 115003118 -33780354 - U6 snRNA snRNA -34 73 1 21 0 0 0 chr11 115003947 115003968 -33779504 + AT_rich Low_complexity Low_complexity 1 21 0 314 149 45 15 chr11 115006220 115006287 -33777185 - L1ME1 LINE L1 -9 6157 6089 291 204 0 0 chr11 115006362 115006411 -33777061 - L2 LINE L2 0 3313 3265 396 0 0 0 chr11 115009741 115009785 -33773687 + (CA)n Simple_repeat Simple_repeat 1 44 0 370 319 8 102 chr11 115009924 115010159 -33773313 + L2 LINE L2 2929 3141 -131 246 219 42 118 chr11 115010168 115010287 -33773185 - LTR11 LTR ERV -234 450 341 269 197 167 15 chr11 115010376 115010442 -33773030 + Tigger5 DNA MER2_type 4 79 -2244 * 1280 176 43 0 chr11 115010435 115010668 -33772804 + Tigger5 DNA MER2_type 2081 2323 0 239 224 0 15 chr11 115011437 115011504 -33771968 + (TGAA)n Simple_repeat Simple_repeat 3 68 0 845 106 28 14 chr11 115012253 115012395 -33771077 + L1MA5A LINE L1 6149 6292 -5 291 369 84 11 chr11 115012432 115012695 -33770777 + L2 LINE L2 537 818 -2496 544 353 96 25 chr11 115012933 115013582 -33769890 + L2 LINE L2 2045 2739 -575 650 300 72 65 chr11 115013750 115014180 -33769292 - LTR67 LTR ERVL -4 553 121 320 314 178 5 chr11 115014510 115014695 -33768777 + MIR SINE MIR 34 250 -12 3437 264 71 35 chr11 115014737 115015992 -33767480 + L1MCc LINE L1 32 1342 -5081 2019 113 0 0 chr11 115015992 115016266 -33767206 + AluSg SINE Alu 35 308 -2 3437 264 71 35 chr11 115016266 115016368 -33767104 + L1MCc LINE L1 1342 1439 -4984 858 221 157 12 chr11 115016384 115016633 -33766839 + MLT1E1 LTR MaLR 10 294 -360 1219 202 75 47 chr11 115016694 115017160 -33766312 + L1MCc LINE L1 2623 3101 -4021 416 256 0 0 chr11 115017796 115017874 -33765598 + MER96B DNA MER1_type? 1 78 -339 238 364 62 8 chr11 115017888 115018017 -33765455 + L2 LINE L2 2924 3059 -213 2374 93 7 0 chr11 115018357 115018659 -33764813 - AluSc SINE Alu -5 304 1 234 133 17 67 chr11 115018659 115018714 -33764758 - MLT1K LTR MaLR -13 575 524 1642 266 36 35 chr11 115018735 115019092 -33764380 - MER74B LTR ERVL 0 622 262 6798 121 62 13 chr11 115019092 115020265 -33763207 - Tigger3b DNA MER2_type 0 1231 1 1642 266 36 35 chr11 115020265 115020456 -33763016 - MER74B LTR ERVL -360 262 73 6613 189 11 22 chr11 115020456 115021900 -33761572 - L1 LINE L1 -912 5234 3807 575 194 0 0 chr11 115021898 115022001 -33761471 + L1PA16 LINE L1 6044 6146 -20 * 370 157 34 34 chr11 115022009 115022098 -33761374 - MER74B LTR ERVL -533 89 1 372 299 87 81 chr11 115022112 115022596 -33760876 - MLT1K LTR MaLR -82 533 24 2748 120 61 17 chr11 115022835 115023410 -33760062 - MER4B LTR ERV1 0 766 1 303 152 0 0 chr11 115024265 115024311 -33759161 + tRNA-Ile-ATT tRNA tRNA 1 46 -31 1493 197 14 24 chr11 115025036 115025325 -33758147 + AluJo SINE Alu 4 289 -23 737 173 0 27 chr11 115025334 115025519 -33757953 + GA-rich Low_complexity Low_complexity 1 180 0 1267 309 22 40 chr11 115025751 115026326 -33757146 - L2 LINE L2 0 3313 2749 262 261 31 0 chr11 115026293 115026358 -33757114 + L2 LINE L2 2749 2815 -499 * 515 281 23 0 chr11 115026359 115026487 -33756985 - L2 LINE L2 -941 2373 2243 22 0 0 0 chr11 115026655 115026677 -33756795 + AT_rich Low_complexity Low_complexity 1 22 0 334 251 101 69 chr11 115026678 115027169 -33756303 + L1MC/D LINE L1 5353 5865 -470 402 341 24 0 chr11 115027169 115027292 -33756180 - MIR SINE MIR -117 145 20 298 338 0 0 chr11 115027388 115027459 -33756013 - L2 LINE L2 -38 3234 3164 308 171 122 24 chr11 115027717 115027799 -33755673 + MLT1J LTR MaLR 1 90 -421 1417 186 47 13 chr11 115027807 115028108 -33755364 + MLT1C LTR MaLR 149 459 -8 206 290 167 29 chr11 115028146 115028284 -33755188 + L2 LINE L2 1346 1502 -1812 328 344 32 0 chr11 115028311 115028436 -33755036 + MIR SINE MIR 6 134 -128 293 186 0 0 chr11 115028455 115028536 -33754936 - MLT2B1 LTR ERVL 0 520 399 403 192 10 10 chr11 115028536 115028635 -33754837 + (TA)n Simple_repeat Simple_repeat 2 100 0 554 188 21 0 chr11 115028635 115028731 -33754741 - MLT2C1 LTR ERVL -70 327 230 373 254 61 9 chr11 115029066 115029180 -33754292 - MLT1C LTR MaLR -340 127 8 923 133 54 12 chr11 115030296 115030462 -33753010 + FRAM SINE Alu 4 176 0 190 244 128 12 chr11 115030734 115030820 -33752652 - MIR SINE MIR -70 138 43 5635 145 24 44 chr11 115030891 115031984 -33751488 + MER11C LTR ERVK 1 1071 0 37 0 0 0 chr11 115032946 115032983 -33750489 + AT_rich Low_complexity Low_complexity 1 37 0 1460 241 69 43 chr11 115033511 115033566 -33749906 + MLT1H LTR MaLR 1 53 -496 2534 47 0 13 chr11 115033566 115033864 -33749608 - AluY SINE Alu -17 294 1 1460 241 69 43 chr11 115033864 115034343 -33749129 + MLT1H LTR MaLR 53 549 0 1744 143 3 66 chr11 115034578 115034715 -33748757 + AluSx SINE Alu 7 116 -196 2250 115 0 0 chr11 115034715 115035020 -33748452 + AluY SINE Alu 1 305 -6 1744 143 3 66 chr11 115035020 115035183 -33748289 + AluSx SINE Alu 116 288 -24 2147 132 39 39 chr11 115035555 115035919 -33747553 - THE1B LTR MaLR 0 364 1 273 125 25 0 chr11 115036354 115036394 -33747078 - MER5A DNA MER1_type 0 189 149 666 149 179 56 chr11 115037242 115037437 -33746035 - MER20 DNA MER1_type 0 219 1 228 395 26 0 chr11 115039360 115039474 -33743998 + L2 LINE L2 2524 2640 -674 710 312 58 80 chr11 115039490 115039955 -33743517 + L2 LINE L2 2817 3271 -1 216 294 0 0 chr11 115040301 115040393 -33743079 + A-rich Low_complexity Low_complexity 1 92 0 21 0 0 0 chr11 115040676 115040697 -33742775 + AT_rich Low_complexity Low_complexity 1 21 0 573 201 72 50 chr11 115040826 115040965 -33742507 + MER5A DNA MER1_type 46 187 -2 244 291 93 12 chr11 115041013 115041099 -33742373 - LTR67 LTR ERVL -362 195 103 215 257 81 27 chr11 115041445 115041519 -33741953 + MIR3 SINE MIR 125 202 -6 232 243 155 11 chr11 115041577 115041710 -33741762 - MIR SINE MIR -71 191 39 2054 135 0 3 chr11 115041773 115042076 -33741396 + AluSx SINE Alu 3 304 -8 979 228 43 36 chr11 115042347 115042628 -33740844 + MER93a LTR ERV1 120 402 0 891 222 107 0 chr11 115043382 115043598 -33739874 + MIR SINE MIR 3 241 -21 542 274 65 7 chr11 115043758 115043911 -33739561 - MER63A DNA MER1_type -5 205 44 1589 199 21 0 chr11 115044059 115044345 -33739127 - AluJo SINE Alu -14 298 7 182 289 0 0 chr11 115044691 115044729 -33738743 + L2 LINE L2 3204 3241 -31 249 217 48 0 chr11 115045248 115045331 -33738141 + L1MC/D LINE L1 5720 5806 -2002 386 241 241 0 chr11 115046091 115046199 -33737273 - MER5A DNA MER1_type -2 187 54 962 223 46 32 chr11 115046246 115046576 -33736896 - MER33 DNA MER1_type -2 322 1 208 333 49 49 chr11 115046576 115046738 -33736734 - MER5A DNA MER1_type -27 162 1 607 224 42 7 chr11 115046577 115046720 -33736752 + MER5B DNA MER1_type 29 176 -2 844 98 121 6 chr11 115047450 115047624 -33735848 - Charlie5 DNA MER1_type -27 2585 2392 259 282 48 40 chr11 115047745 115047869 -33735603 + L2 LINE L2 2973 3097 -175 630 256 87 14 chr11 115048029 115048236 -33735236 + MIR SINE MIR 40 261 -1 229 169 0 143 chr11 115049037 115049114 -33734358 + HsTC2 DNA Tc2 1220 1285 -613 362 239 0 0 chr11 115049264 115049335 -33734137 - L2 LINE L2 -4 3309 3239 362 271 0 41 chr11 115050910 115051032 -33732440 + L2 LINE L2 1856 1972 -1342 315 0 0 0 chr11 115051033 115051068 -33732404 + (T)n Simple_repeat Simple_repeat 1 35 0 227 309 192 40 chr11 115051190 115051539 -33731933 + L2 LINE L2 2561 2962 -352 460 124 90 0 chr11 115051648 115051737 -33731735 - MER53 DNA DNA 0 189 93 25 0 0 0 chr11 115051756 115051781 -33731691 + AT_rich Low_complexity Low_complexity 1 25 0 212 273 216 0 chr11 115051854 115051942 -33731530 + L2 LINE L2 3204 3310 -3 406 173 164 9 chr11 115052627 115052737 -33730735 + Charlie5 DNA MER1_type 1 127 -2485 * 1316 139 65 7 chr11 115052734 115053028 -33730444 + Charlie5 DNA MER1_type 2234 2544 -68 5155 153 60 37 chr11 115053034 115053364 -33730108 - L1MA9 LINE L1 -2 6310 5989 1243 208 74 21 chr11 115053364 115053648 -33729824 - AluJo SINE Alu 0 302 4 5155 153 60 37 chr11 115053648 115053797 -33729675 - L1MA9 LINE L1 -323 5989 5845 270 81 0 0 chr11 115053797 115053834 -33729638 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 5155 153 60 37 chr11 115053834 115054965 -33728507 - L1MA9 LINE L1 -467 5845 4661 1003 133 0 0 chr11 115055005 115055148 -33728324 + THE1B LTR MaLR 1 143 -221 1351 138 46 32 chr11 115055364 115055581 -33727891 + THE1B LTR MaLR 145 364 0 207 257 48 57 chr11 115055834 115055939 -33727533 + L2 LINE L2 2918 3021 -251 2102 140 0 0 chr11 115056039 115056324 -33727148 - AluSg SINE Alu -23 287 3 273 236 34 45 chr11 115056324 115056409 -33727063 + L2 LINE L2 3189 3272 0 850 249 19 10 chr11 115057246 115057451 -33726021 - MIR SINE MIR -16 246 40 219 291 70 12 chr11 115057601 115057687 -33725785 + L2 LINE L2 3190 3280 -33 1493 179 0 43 chr11 115058169 115058448 -33725024 + AluJo SINE Alu 27 293 -19 380 314 51 0 chr11 115059651 115059769 -33723703 + L2 LINE L2 3148 3271 -1 1078 215 36 16 chr11 115060232 115060679 -33722793 + MLT1D LTR MaLR 1 505 0 253 197 15 15 chr11 115060841 115060907 -33722565 + A-rich Low_complexity Low_complexity 2 67 0 225 161 210 37 chr11 115061498 115061579 -33721893 - L1MC5 LINE L1 -214 7747 7653 413 354 69 37 chr11 115061799 115062045 -33721427 - L3 LINE CR1 -357 1220 967 244 146 0 0 chr11 115062067 115062108 -33721364 - L2 LINE L2 0 3313 3273 261 0 0 0 chr11 115063517 115063546 -33719926 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 508 250 112 96 chr11 115063938 115064533 -33718939 + MLT1G1 LTR MaLR 2 555 0 22 0 0 0 chr11 115064864 115064886 -33718586 + AT_rich Low_complexity Low_complexity 1 22 0 451 242 75 56 chr11 115065486 115065674 -33717798 + MIR SINE MIR 19 213 -36 2159 178 29 17 chr11 115066044 115066465 -33717007 + MSTB LTR MaLR 1 426 0 402 325 32 7 chr11 115067556 115067710 -33715762 - MIR SINE MIR -6 256 99 433 162 15 0 chr11 115068011 115068079 -33715393 + AluSc SINE Alu 134 202 -107 1214 209 75 43 chr11 115068815 115069279 -33714193 - L1MEc LINE L1 -4021 3101 2623 858 221 157 12 chr11 115069340 115069589 -33713883 - MLT1E1 LTR MaLR -360 294 10 353 228 30 10 chr11 115069605 115069706 -33713766 - L1MEc LINE L1 -4984 1439 1337 1041 121 0 0 chr11 115069707 115069856 -33713616 - AluSg/x SINE Alu -2 308 160 236 299 58 11 chr11 115070337 115070424 -33713048 - L2 LINE L2 -33 3280 3190 850 249 19 10 chr11 115070574 115070779 -33712693 + MIR SINE MIR 40 246 -16 273 236 34 45 chr11 115071617 115071702 -33711770 - L2 LINE L2 0 3272 3188 2102 140 0 0 chr11 115071702 115071987 -33711485 + AluSg SINE Alu 3 287 -23 207 257 48 57 chr11 115072087 115072192 -33711280 - L2 LINE L2 -251 3021 2918 2606 222 26 87 chr11 115072564 115073639 -33709833 - L1MDa LINE L1 -1590 4950 3942 1150 192 57 10 chr11 115073702 115074613 -33708859 - L1MDa LINE L1 -3118 3422 2364 2036 93 10 33 chr11 115074616 115074918 -33708554 - AluSq SINE Alu -18 295 1 1469 255 48 19 chr11 115074938 115075350 -33708122 - L1MDa LINE L1 -6020 520 97 23 33 0 0 chr11 115075352 115075382 -33708090 + AT_rich Low_complexity Low_complexity 1 30 0 337 158 118 0 chr11 115075421 115075497 -33707975 - L1MDa LINE L1 -6453 87 3 327 278 61 0 chr11 115075779 115075894 -33707578 + MIR SINE MIR 75 196 -66 189 0 0 0 chr11 115076259 115076280 -33707192 + (T)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr11 115076867 115076890 -33706582 + AT_rich Low_complexity Low_complexity 1 23 0 282 189 0 0 chr11 115076908 115076961 -33706511 + L1MC5 LINE L1 7814 7866 -95 227 221 44 15 chr11 115076999 115077067 -33706405 + L1MC/D LINE L1 5691 5760 -2048 816 163 78 152 chr11 115078124 115078381 -33705091 - MER8 DNA MER2_type 0 239 2 370 267 0 17 chr11 115078596 115078712 -33704760 - MIR SINE MIR -1 261 148 260 281 118 78 chr11 115079689 115079842 -33703630 + L2 LINE L2 3155 3313 0 1979 38 4 0 chr11 115080478 115080714 -33702758 + L1PA3 LINE L1 5914 6150 -5 262 303 213 13 chr11 115081911 115082066 -33701406 - MIR SINE MIR -5 257 72 226 200 73 0 chr11 115082375 115082430 -33701042 + L1P LINE L1 4882 4940 -1206 24 32 0 0 chr11 115082470 115082501 -33700971 + AT_rich Low_complexity Low_complexity 1 31 0 26 0 0 0 chr11 115082596 115082622 -33700850 + AT_rich Low_complexity Low_complexity 1 26 0 339 323 152 0 chr11 115082795 115083012 -33700460 + L1MC/D LINE L1 5402 5651 -470 246 264 72 16 chr11 115083035 115083160 -33700312 + L1MC/D LINE L1 5736 5867 -1941 739 113 8 57 chr11 115083178 115083302 -33700170 - AluJb SINE Alu -194 118 1 1866 109 69 0 chr11 115083338 115083613 -33699859 - AluSx SINE Alu -18 294 1 2370 74 7 0 chr11 115083804 115084100 -33699372 - AluY SINE Alu -13 298 1 246 222 342 0 chr11 115084417 115084534 -33698938 - MIR SINE MIR -6 256 100 663 221 57 0 chr11 115084548 115084688 -33698784 - MER46A DNA MER2_type -87 149 2 1509 201 118 24 chr11 115084804 115085226 -33698246 - MLT1C LTR MaLR 0 467 6 1504 167 61 87 chr11 115085231 115085656 -33697816 - MLT1C-int LTR MaLR 0 1371 958 252 343 0 29 chr11 115087741 115087811 -33695661 + L2 LINE L2 3154 3221 -51 226 313 70 20 chr11 115088923 115089124 -33694348 - L1M4 LINE L1 -2204 3942 3732 509 282 44 33 chr11 115089677 115089858 -33693614 - MIR SINE MIR -4 258 76 278 264 123 144 chr11 115091085 115091352 -33692120 - L2 LINE L2 -967 2347 2089 1917 161 28 8 chr11 115091352 115091707 -33691765 + MER47A DNA MER2_type 4 365 -1 278 264 123 144 chr11 115091707 115091836 -33691636 - L2 LINE L2 -1225 2089 1959 296 245 0 0 chr11 115091837 115091890 -33691582 + AluJ/monomer SINE Alu 1 53 -249 21 36 0 0 chr11 115092074 115092102 -33691370 + AT_rich Low_complexity Low_complexity 1 28 0 868 234 148 66 chr11 115092656 115093156 -33690316 + L1MC4 LINE L1 7377 7917 -125 2254 82 10 3 chr11 115093542 115093835 -33689637 + AluSp SINE Alu 1 295 -18 316 224 72 125 chr11 115094643 115094795 -33688677 + MIR3 SINE MIR 3 146 -62 21 36 0 0 chr11 115094968 115094996 -33688476 + AT_rich Low_complexity Low_complexity 1 28 0 254 353 33 33 chr11 115095093 115095243 -33688229 + MER5A DNA MER1_type 37 186 -3 310 223 152 36 chr11 115095839 115095951 -33687521 - L1ME4a LINE L1 -17 6104 5980 225 277 75 11 chr11 115096120 115096214 -33687258 - MLT1L LTR MaLR -6 609 510 257 284 98 41 chr11 115096244 115096438 -33687034 - MLT1L LTR MaLR -189 426 222 301 274 160 52 chr11 115096574 115096993 -33686479 - L1ME4a LINE L1 -2027 5781 5318 23 54 0 0 chr11 115097205 115097242 -33686230 + AT_rich Low_complexity Low_complexity 1 37 0 1285 249 157 42 chr11 115097447 115098214 -33685258 - HAL1 LINE L1 -2 2505 1651 208 333 151 43 chr11 115098965 115099151 -33684321 - MIR SINE MIR -49 213 8 308 186 23 47 chr11 115099152 115099238 -33684234 + MER63 DNA MER1_type 2 711 -125 517 294 178 15 chr11 115100264 115100607 -33682865 + LTR33 LTR ERVL 123 521 0 2224 143 44 5 chr11 115101266 115101650 -33681822 + MSTA LTR MaLR 29 427 -1 257 302 122 39 chr11 115102081 115102336 -33681136 + ERVL LTR ERVL 1265 1540 -4224 742 298 68 38 chr11 115102374 115102848 -33680624 + ERVL LTR ERVL 1588 2075 -3579 823 161 37 0 chr11 115102890 115103051 -33680421 + MER2 DNA MER2_type 1 167 -178 256 262 0 0 chr11 115103113 115103174 -33680298 + MER2 DNA MER2_type 285 345 0 720 215 45 50 chr11 115103174 115103374 -33680098 + ERVL LTR ERVL 2185 2383 -3381 326 306 172 21 chr11 115103374 115103560 -33679912 + L2 LINE L2 409 622 -2692 315 333 29 11 chr11 115103956 115104130 -33679342 + ERVL LTR ERVL 2896 3072 -2582 1570 248 60 94 chr11 115104186 115105016 -33678456 + L2 LINE L2 2049 2817 -496 8512 100 48 1 chr11 115105016 115106241 -33677231 - HSMAR1 DNA Mariner 0 1287 5 1570 248 60 94 chr11 115106241 115106722 -33676750 + L2 LINE L2 2817 3313 0 2146 145 31 23 chr11 115106732 115107119 -33676353 - MLT1B LTR MaLR 0 390 1 6628 141 39 27 chr11 115107243 115107730 -33675742 - Tigger3b DNA MER2_type -1797 1231 751 2572 17 3 7 chr11 115107730 115108031 -33675441 + AluYa5 SINE Alu 1 300 -11 6628 141 39 27 chr11 115108031 115108760 -33674712 - Tigger3b DNA MER2_type -2277 751 1 312 364 48 31 chr11 115108818 115109046 -33674426 - MIR SINE MIR -30 232 1 248 53 26 0 chr11 115109382 115109420 -33674052 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 23 54 0 0 chr11 115109559 115109596 -33673876 + AT_rich Low_complexity Low_complexity 1 37 0 716 184 16 0 chr11 115110326 115110451 -33673021 + FLAM_A SINE Alu 1 127 -6 3467 229 76 133 chr11 115111787 115113472 -33670000 + L2 LINE L2 1196 2783 -531 19345 82 7 9 chr11 115113529 115116226 -33667246 + HERVL-A2 LTR ERVL 2965 5654 0 1752 166 61 36 chr11 115116226 115116763 -33666709 + MLT2A2 LTR ERVL 1 554 0 1171 295 75 29 chr11 115116770 115117248 -33666224 + L2 LINE L2 2805 3304 -9 1992 113 46 0 chr11 115117315 115117598 -33665874 - AluSx SINE Alu -12 300 5 687 250 136 30 chr11 115117700 115117936 -33665536 - MIR SINE MIR 0 262 2 375 250 76 45 chr11 115119227 115119359 -33664113 + L2 LINE L2 3137 3272 0 1802 189 0 0 chr11 115119510 115119806 -33663666 - AluJo SINE Alu -12 300 5 606 164 10 0 chr11 115119839 115119943 -33663529 - AluJb SINE Alu -187 125 21 1104 235 91 17 chr11 115120090 115120632 -33662840 - LTR36 LTR ERV1 0 611 2 3805 27 4 0 chr11 115120973 115121450 -33662022 - L1PA4 LINE L1 -2143 4003 3525 11759 21 1 0 chr11 115121450 115123584 -33659888 + L1PA4 LINE L1 4019 6154 -1 25 31 0 0 chr11 115123904 115123936 -33659536 + AT_rich Low_complexity Low_complexity 1 32 0 347 279 70 39 chr11 115124325 115124454 -33659018 - MER5B DNA MER1_type -1 177 45 333 312 80 94 chr11 115124800 115125162 -33658310 - L2 LINE L2 -1 3271 2915 776 241 30 35 chr11 115127043 115127246 -33656226 + MIR SINE MIR 20 221 -41 367 244 38 32 chr11 115127250 115127384 -33656088 - MIR SINE MIR -63 145 63 262 317 44 83 chr11 115127804 115128167 -33655305 - L2 LINE L2 -910 2404 2056 2159 123 0 7 chr11 115129002 115129304 -33654168 - AluSx SINE Alu -12 300 1 876 273 52 43 chr11 115130675 115131154 -33652318 - MER115 DNA AcHobo -29 664 118 240 35 0 0 chr11 115131903 115131932 -33651540 + (ATG)n Simple_repeat Simple_repeat 2 30 0 780 265 90 0 chr11 115131937 115132160 -33651312 - MIR SINE MIR -11 251 9 202 346 65 65 chr11 115132903 115133088 -33650384 + L2 LINE L2 2916 3100 -172 620 311 77 37 chr11 115133458 115133757 -33649715 + LTR16A LTR ERVL 133 443 -7 181 298 18 0 chr11 115133827 115133884 -33649588 + MIR SINE MIR 49 106 -156 570 264 100 14 chr11 115134033 115134253 -33649219 - MLT1J LTR MaLR -173 338 100 262 278 100 22 chr11 115135730 115135820 -33647652 + MIR SINE MIR 165 261 -1 21 0 0 0 chr11 115135868 115135889 -33647583 + AT_rich Low_complexity Low_complexity 1 21 0 452 331 37 25 chr11 115135941 115136186 -33647286 - L1M4 LINE L1 -2265 3881 3634 5786 108 25 5 chr11 115136195 115137522 -33645950 + L1PA13 LINE L1 4814 6163 0 458 333 50 17 chr11 115137525 115137705 -33645767 + MIR SINE MIR 4 189 -73 520 81 81 0 chr11 115137706 115137780 -33645692 + MADE1 DNA Mariner 1 80 0 687 298 56 53 chr11 115137808 115138258 -33645214 - L1M4 LINE L1 -2574 3572 3122 290 313 31 8 chr11 115138294 115138422 -33645050 - L1MC5 LINE L1 -48 7913 7783 383 189 119 0 chr11 115138579 115138722 -33644750 - L1MC5 LINE L1 -370 7591 7432 28 48 0 0 chr11 115138767 115138809 -33644663 + AT_rich Low_complexity Low_complexity 1 42 0 440 172 11 0 chr11 115138972 115139059 -33644413 - L1MC5 LINE L1 -542 7419 7332 397 191 15 0 chr11 115139061 115139129 -33644343 + MER106A DNA MER1_type 1 69 -167 672 312 78 68 chr11 115139139 115139321 -33644151 - L1M4 LINE L1 -3161 2985 2806 1875 145 0 30 chr11 115139321 115139625 -33643847 - AluSx SINE Alu -16 296 2 672 312 78 68 chr11 115139625 115139793 -33643679 - L1M4 LINE L1 -3340 2806 2641 243 0 0 0 chr11 115139793 115139820 -33643652 + (TG)n Simple_repeat Simple_repeat 2 28 0 672 312 78 68 chr11 115139820 115140113 -33643359 - L1M4 LINE L1 -3505 2641 2335 652 332 115 16 chr11 115140132 115140454 -33643018 + L2 LINE L2 2811 3164 -149 2615 119 3 3 chr11 115140464 115140842 -33642630 + MER83B LTR ERV1 1 378 0 8845 151 24 30 chr11 115140843 115141217 -33642255 + MER83B-int LTR ERV1 13 388 -4492 2972 162 32 57 chr11 115141217 115141845 -33641627 - LTR9 LTR ERV1 0 612 1 8845 151 24 30 chr11 115141845 115142231 -33641241 + MER83B-int LTR ERV1 388 775 -4105 2285 105 3 0 chr11 115142231 115142526 -33640946 + AluSc SINE Alu 1 296 -13 8845 151 24 30 chr11 115142526 115143957 -33639515 + MER83B-int LTR ERV1 775 2213 -2667 2177 119 3 0 chr11 115143957 115144251 -33639221 + AluSp SINE Alu 1 295 -18 8845 151 24 30 chr11 115144251 115145299 -33638173 + MER83B-int LTR ERV1 2213 4865 -15 2390 143 0 21 chr11 115145304 115145690 -33637782 + MER83B LTR ERV1 1 378 0 378 280 72 16 chr11 115145690 115145815 -33637657 + L2 LINE L2 3182 3313 0 1434 224 36 58 chr11 115146275 115146668 -33636804 + MLT2B1 LTR ERVL 1 384 -136 314 286 99 50 chr11 115146905 115147087 -33636385 + MIR SINE MIR 45 235 -27 505 228 68 62 chr11 115147156 115147318 -33636154 - MIR SINE MIR -94 168 6 194 310 53 88 chr11 115147391 115147504 -33635968 + L2 LINE L2 3144 3252 -20 232 307 55 39 chr11 115149095 115149222 -33634250 + MIR SINE MIR 1 129 -133 25 95 0 0 chr11 115150211 115150285 -33633187 + AT_rich Low_complexity Low_complexity 1 74 0 245 146 41 49 chr11 115150392 115150515 -33632957 + (TA)n Simple_repeat Simple_repeat 2 123 0 338 197 0 0 chr11 115150862 115150933 -33632539 + LTR28 LTR ERV1 1 55 -379 2314 164 27 0 chr11 115150947 115151319 -33632153 + MER61D LTR ERV1 120 501 0 450 189 45 45 chr11 115151399 115151531 -33631941 + L1MC4 LINE L1 7484 7615 -427 * 917 344 38 11 chr11 115151526 115151974 -33631498 + L1MEc LINE L1 20 479 -5917 249 228 11 141 chr11 115152066 115152127 -33631345 + MIR SINE MIR 173 220 -42 484 198 36 52 chr11 115152127 115152319 -33631153 + MER53 DNA DNA 1 189 0 249 228 11 141 chr11 115152319 115152349 -33631123 + MIR SINE MIR 220 252 -10 303 336 61 68 chr11 115152468 115152912 -33630560 + L2 LINE L2 1951 2391 -923 22 0 0 0 chr11 115155622 115155644 -33627828 + AT_rich Low_complexity Low_complexity 1 22 0 297 268 21 70 chr11 115155740 115155882 -33627590 + MIR3 SINE MIR 36 170 -38 510 308 91 16 chr11 115155935 115156188 -33627284 + L2 LINE L2 2367 2638 -676 1015 275 83 23 chr11 115156300 115156743 -33626729 - L2 LINE L2 -1235 2079 1610 415 232 24 72 chr11 115156775 115156900 -33626572 + L2 LINE L2 3195 3313 0 * 615 312 79 17 chr11 115156899 115157225 -33626247 + L2 LINE L2 2629 2977 -295 702 266 48 52 chr11 115157268 115157472 -33626000 + MIR SINE MIR 6 210 -52 1625 176 0 33 chr11 115157472 115157779 -33625693 + AluJb SINE Alu 3 299 -13 702 266 48 52 chr11 115157779 115157822 -33625650 + MIR SINE MIR 210 252 -10 433 236 77 73 chr11 115157859 115158079 -33625393 + L2 LINE L2 3084 3304 -9 1231 208 131 13 chr11 115158369 115158758 -33624714 - HsTC2 DNA Tc2 0 1898 1288 377 204 222 0 chr11 115158764 115158872 -33624600 - HsTC2 DNA Tc2 -1763 135 4 294 283 91 10 chr11 115159009 115159108 -33624364 - MIR SINE MIR -55 207 101 472 191 125 15 chr11 115159775 115159911 -33623561 - L1MD2 LINE L1 -15 6344 6194 5062 218 46 49 chr11 115159968 115162273 -33621199 - L1MD1 LINE L1 -400 6236 3942 1150 192 57 10 chr11 115162336 115163247 -33620225 - L1MD1 LINE L1 -3118 3422 2364 2051 113 7 3 chr11 115163250 115163543 -33619929 - AluSq SINE Alu -19 294 1 208 348 78 9 chr11 115163586 115163701 -33619771 + L2 LINE L2 3184 3306 -7 3095 178 36 21 chr11 115164006 115164619 -33618853 + LTR26E LTR ERV1 1 622 0 4127 87 4 0 chr11 115164728 115165280 -33618192 + MER41A LTR ERV1 1 554 0 246 77 26 0 chr11 115165709 115165748 -33617724 - LTR54 LTR ERV1 -1 509 470 2090 170 45 21 chr11 115165748 115166265 -33617207 + MLT2A2 LTR ERVL 1 552 -2 258 167 28 42 chr11 115166267 115166339 -33617133 - LTR54 LTR ERV1 -36 474 404 * 1050 200 135 56 chr11 115166321 115166751 -33616721 + LTR56 LTR ERV1 7 437 0 1470 202 73 61 chr11 115166751 115167177 -33616295 - LTR54 LTR ERV1 -78 432 2 478 144 89 0 chr11 115167373 115167463 -33616009 + MER4A LTR ERV1 1 98 -566 1544 149 182 72 chr11 115167463 115167825 -33615647 + MER4A LTR ERV1 261 662 -2 4932 44 0 0 chr11 115167885 115168476 -33614996 - LTR10C LTR ERV1 0 591 1 297 293 0 0 chr11 115168797 115168872 -33614600 - MIR SINE MIR -28 234 160 1530 164 4 0 chr11 115168872 115169116 -33614356 - Tigger3(Golem) DNA MER2_type -1 3028 2784 2381 104 62 6 chr11 115169116 115169473 -33613999 + MER51B LTR ERV1 1 377 0 8298 150 36 12 chr11 115169473 115170901 -33612571 + MER51B-int LTR ERV1 1 1462 -6354 3442 140 108 32 chr11 115170947 115171572 -33611900 + LTR1 LTR ERV1 1 690 -95 189 0 0 0 chr11 115171572 115171593 -33611879 + (AGGGGG)n Simple_repeat Simple_repeat 5 25 0 3442 140 108 32 chr11 115171593 115171689 -33611783 + LTR1 LTR ERV1 690 777 -8 679 156 50 68 chr11 115171798 115171997 -33611475 + MER4A LTR ERV1 281 534 -130 3729 102 58 0 chr11 115172004 115172664 -33610808 + MER51B-int LTR ERV1 1815 2512 -5304 2316 97 7 0 chr11 115172767 115173067 -33610405 - AluSx SINE Alu -10 302 1 196 261 136 0 chr11 115173194 115173282 -33610190 + L2 LINE L2 1970 2069 -1245 1174 45 0 0 chr11 115173440 115173574 -33609898 + AluSc SINE Alu 1 134 -175 1988 133 7 0 chr11 115174187 115174481 -33608991 - AluSx SINE Alu -14 298 3 2162 107 0 3 chr11 115174808 115175097 -33608375 - AluSc SINE Alu -21 288 1 281 277 110 39 chr11 115175114 115175269 -33608203 - MIR SINE MIR -77 185 20 1010 260 46 48 chr11 115175284 115175676 -33607796 - MER93a LTR ERV1 0 402 12 1676 245 41 47 chr11 115175951 115176417 -33607055 + MLT2B1 LTR ERVL 1 463 -57 230 236 0 0 chr11 115176668 115176723 -33606749 + (CA)n Simple_repeat Simple_repeat 1 55 0 421 215 0 0 chr11 115176745 115176821 -33606651 + MER3 DNA MER1_type 5 80 -129 233 204 0 0 chr11 115176821 115176870 -33606602 - MLT2B1 LTR ERVL 0 520 472 229 157 0 29 chr11 115176882 115176952 -33606520 + (TATATG)n Simple_repeat Simple_repeat 5 72 0 999 229 24 30 chr11 115176956 115177317 -33606155 - MLT2B1 LTR ERVL -40 480 19 520 187 89 8 chr11 115177325 115177448 -33606024 + MER3 DNA MER1_type 76 208 -1 461 221 10 25 chr11 115177524 115177642 -33605830 + MLT1H1 LTR MaLR 171 265 -290 3867 89 0 31 chr11 115177675 115178262 -33605210 - L1P LINE L1 -743 5403 4835 837 110 14 28 chr11 115178280 115178425 -33605047 + Charlie1 DNA MER1_type 2413 2555 -206 294 227 18 27 chr11 115178427 115178537 -33604935 + (TA)n Simple_repeat Simple_repeat 1 109 0 446 234 166 7 chr11 115178683 115178828 -33604644 + MLT1H1 LTR MaLR 371 538 -29 2182 110 3 0 chr11 115180025 115180326 -33603146 + AluSx SINE Alu 1 302 -10 2394 55 10 0 chr11 115180355 115180646 -33602826 - AluY SINE Alu -17 294 1 212 197 16 66 chr11 115181563 115181624 -33601848 - L2 LINE L2 -5 3267 3210 721 295 51 35 chr11 115181928 115182182 -33601290 + MIR SINE MIR 4 261 -1 626 275 55 5 chr11 115182944 115183144 -33600328 - MIR SINE MIR -48 214 5 25 0 0 0 chr11 115184126 115184151 -33599321 + AT_rich Low_complexity Low_complexity 1 25 0 248 311 33 0 chr11 115189188 115189278 -33594194 + L3 LINE CR1 1302 1394 -183 404 279 205 61 chr11 115189903 115190200 -33593272 - L3 LINE CR1 -5 1572 1233 323 380 63 14 chr11 115190964 115191106 -33592366 + L2 LINE L2 3104 3252 -20 25 0 0 0 chr11 115191847 115191872 -33591600 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr11 115193536 115193559 -33589913 + AT_rich Low_complexity Low_complexity 1 23 0 1712 164 0 31 chr11 115194325 115194617 -33588855 + AluJo SINE Alu 4 286 -26 833 125 0 31 chr11 115194633 115194761 -33588711 + FLAM_C SINE Alu 1 124 -19 186 43 0 0 chr11 115194768 115194791 -33588681 + (CAAT)n Simple_repeat Simple_repeat 4 26 0 337 313 14 56 chr11 115194796 115194940 -33588532 - MER5A DNA MER1_type -38 151 14 642 262 113 23 chr11 115194944 115195165 -33588307 + MIR SINE MIR 12 252 -10 277 306 35 0 chr11 115195407 115195492 -33587980 - L2 LINE L2 0 3272 3185 22 35 0 0 chr11 115195846 115195875 -33587597 + AT_rich Low_complexity Low_complexity 1 29 0 526 259 163 66 chr11 115196912 115197172 -33586300 - MLT1G1 LTR MaLR 0 590 357 800 212 54 30 chr11 115197172 115197375 -33586097 - MER3 DNA MER1_type -1 208 1 526 259 163 66 chr11 115197375 115197587 -33585885 - MLT1G1 LTR MaLR -233 357 57 6353 89 49 0 chr11 115197712 115198774 -33584698 - L1PA12 LINE L1 0 6168 5083 935 159 25 6 chr11 115198774 115198931 -33584541 - AluSc SINE Alu -16 293 134 274 314 12 0 chr11 115199231 115199317 -33584155 + MIR SINE MIR 99 185 -77 2282 99 3 0 chr11 115199422 115199725 -33583747 - AluY SINE Alu -7 304 1 2246 120 0 0 chr11 115199950 115200249 -33583223 - AluSx SINE Alu -13 299 1 668 223 64 6 chr11 115200687 115200844 -33582628 - MIR SINE MIR -77 185 20 195 42 0 0 chr11 115201310 115201334 -33582138 + (CAG)n Simple_repeat Simple_repeat 1 24 0 235 164 41 27 chr11 115201835 115201908 -33581564 + (TATATG)n Simple_repeat Simple_repeat 4 77 0 1684 213 80 103 chr11 115203199 115203410 -33580062 + MLT1E LTR MaLR 1 215 -378 1990 107 3 62 chr11 115203410 115203535 -33579937 + AluSx SINE Alu 11 142 -170 2133 95 0 3 chr11 115203535 115203839 -33579633 + AluY SINE Alu 1 303 0 1990 107 3 62 chr11 115203839 115204020 -33579452 + AluSx SINE Alu 142 300 -12 1684 213 80 103 chr11 115204020 115204409 -33579063 + MLT1E LTR MaLR 215 587 -6 3222 141 42 11 chr11 115205181 115205748 -33577724 + MER4D LTR ERV1 1 585 -318 640 162 17 8 chr11 115205752 115205869 -33577603 + MER4D LTR ERV1 786 903 0 1790 183 35 182 chr11 115205942 115206746 -33576726 - LTR8A LTR ERV1 -1 726 41 251 263 157 14 chr11 115206804 115206990 -33576482 - L1M4 LINE L1 -4780 1864 1590 3614 138 56 33 chr11 115207470 115208108 -33575364 + MER39B LTR ERV1 1 653 0 6598 132 73 5 chr11 115209292 115210356 -33573116 - THE1C-int LTR MaLR -441 1139 3 1932 145 47 22 chr11 115210359 115210724 -33572748 - THE1C LTR MaLR -1 374 1 1134 318 17 6 chr11 115210935 115211281 -33572191 - LTR16B LTR ERVL -8 456 107 780 219 83 73 chr11 115211305 115211593 -33571879 + LTR8A LTR ERV1 430 720 -7 3527 135 26 3 chr11 115211805 115212382 -33571090 - LTR49 LTR ERV1 -2 593 4 2969 106 119 0 chr11 115212841 115213368 -33570104 + MER57B-int LTR ERV1 2676 3265 -4551 1734 195 50 24 chr11 115213367 115213816 -33569656 + MER57B-int LTR ERV1 1515 3368 -2578 * 420 85 122 0 chr11 115213795 115213877 -33569595 + MER57B-int LTR ERV1 2210 2301 -2916 * 1686 100 4 4 chr11 115213874 115214124 -33569348 + MER57B-int LTR ERV1 5081 5330 -2088 293 219 49 8 chr11 115214146 115214269 -33569203 + (TTAA)n Simple_repeat Simple_repeat 3 130 0 6880 56 2 8 chr11 115214369 115215715 -33567757 - L1PA7 LINE L1 -1 6153 4811 6100 126 6 55 chr11 115215715 115216926 -33566546 + L1P LINE L1 1588 2738 -3408 6067 145 49 8 chr11 115216963 115218236 -33565236 + MER57B-int LTR ERV1 5620 6991 -546 929 151 60 6 chr11 115218248 115218414 -33565058 + MER57B-int LTR ERV1 436 610 -6927 * 1096 124 43 0 chr11 115218410 115218571 -33564901 + MER57B-int LTR ERV1 6983 7150 -387 568 149 11 0 chr11 115218571 115218665 -33564807 + LTR54B LTR ERV1 5 99 -399 309 163 30 27 chr11 115218665 115218752 -33564720 + MER57B-int LTR ERV1 7265 7321 -216 229 286 16 0 chr11 115218844 115218907 -33564565 - MER117 DNA MER1_type -91 106 43 2588 128 51 5 chr11 115218950 115219364 -33564108 + MER57B LTR ERV1 2 434 0 3023 156 12 21 chr11 115219364 115219812 -33563660 + MER57B-int LTR ERV1 1 445 -7092 2275 68 0 65 chr11 115219812 115220134 -33563338 + AluY SINE Alu 3 303 -8 3023 156 12 21 chr11 115220134 115220203 -33563269 + MER57B-int LTR ERV1 445 513 -7024 917 192 57 6 chr11 115220303 115220480 -33562992 + MER57B-int LTR ERV1 487 672 -6865 * 1624 151 16 46 chr11 115220477 115220781 -33562691 + MER57B-int LTR ERV1 288 582 -5364 2419 180 60 9 chr11 115220781 115221248 -33562224 + MER57B-int LTR ERV1 1881 2371 -5166 * 4930 148 82 29 chr11 115221247 115221892 -33561580 + MER57B-int LTR ERV1 2042 2651 -2364 2120 146 0 0 chr11 115221892 115222200 -33561272 + AluSx SINE Alu 1 308 -4 4930 148 82 29 chr11 115222200 115223051 -33560421 + MER57B-int LTR ERV1 2651 3295 -1720 6587 122 50 2 chr11 115223060 115224063 -33559409 + MER57B-int LTR ERV1 5541 6591 -946 3964 98 61 3 chr11 115224164 115224758 -33558714 + MER57B-int LTR ERV1 6521 7148 -389 629 168 26 0 chr11 115224758 115224871 -33558601 + LTR54B LTR ERV1 3 118 -380 1504 127 127 0 chr11 115224872 115225116 -33558356 + MER57B-int LTR ERV1 7263 7537 0 2229 161 61 5 chr11 115225116 115225527 -33557945 + MER57B LTR ERV1 1 434 0 381 261 37 53 chr11 115227000 115227143 -33556329 + MIR SINE MIR 4 143 -65 1960 128 0 27 chr11 115227726 115228023 -33555449 + AluSq SINE Alu 2 290 -23 224 219 0 0 chr11 115229036 115229077 -33554395 - L2 LINE L2 -8 3264 3224 315 204 151 0 chr11 115229124 115229217 -33554255 + L1MC5 LINE L1 7003 7109 -852 1147 326 16 97 chr11 115229222 115229541 -33553931 - AluSq SINE Alu -10 293 1 620 121 0 0 chr11 115229541 115229632 -33553840 - AluSq/x SINE Alu -176 137 47 1182 119 0 17 chr11 115229632 115229808 -33553664 - AluSx SINE Alu -130 182 10 644 221 84 62 chr11 115229858 115230180 -33553292 + L1MC5 LINE L1 7186 7514 -447 35 0 0 0 chr11 115230333 115230368 -33553104 + AT_rich Low_complexity Low_complexity 1 35 0 889 201 16 42 chr11 115230393 115230582 -33552890 - AluJo SINE Alu -128 184 1 810 244 66 25 chr11 115230584 115230903 -33552569 + L1MC5 LINE L1 7586 7917 -44 635 93 10 21 chr11 115232028 115232125 -33551347 - L1MC1 LINE L1 -15 6318 6223 256 193 11 91 chr11 115232273 115232321 -33551151 + LTR33A LTR ERVL 443 482 -41 2134 171 67 10 chr11 115232321 115232724 -33550748 + MSTB LTR MaLR 1 426 0 256 193 11 91 chr11 115232724 115232763 -33550709 + LTR33A LTR ERVL 482 523 0 586 309 63 5 chr11 115232884 115233091 -33550381 - HERVL LTR ERVL -2398 3256 3038 889 324 76 28 chr11 115233314 115234078 -33549394 - HERVL LTR ERVL -2815 2839 1977 304 81 14 54 chr11 115234332 115234406 -33549066 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 244 179 18 18 chr11 115234697 115234753 -33548719 + (CATA)n Simple_repeat Simple_repeat 3 58 0 561 176 143 0 chr11 115235131 115235250 -33548222 - LTR55 LTR ERV -410 138 3 297 205 0 162 chr11 115235252 115235301 -33548171 + MIR SINE MIR 155 176 -86 1427 214 11 0 chr11 115235301 115235577 -33547895 + AluJo SINE Alu 5 283 -29 297 205 0 162 chr11 115235577 115235644 -33547828 + MIR SINE MIR 176 252 -10 224 260 0 0 chr11 115236456 115236506 -33546966 + MIR SINE MIR 99 148 -114 402 298 83 97 chr11 115236565 115237092 -33546380 - LTR67 LTR ERVL -10 547 28 391 294 76 0 chr11 115237189 115237308 -33546164 - MIR SINE MIR -106 156 29 388 318 0 16 chr11 115237725 115237851 -33545621 + MIR SINE MIR 20 143 -119 1501 201 30 38 chr11 115237973 115238341 -33545131 + MLT1A1 LTR MaLR 1 365 0 535 262 95 86 chr11 115238922 115239425 -33544047 + LTR67 LTR ERVL 50 557 0 340 274 32 100 chr11 115240503 115240693 -33542779 + L1MC4 LINE L1 7834 8010 -32 1269 191 5 0 chr11 115240998 115241208 -33542264 - AluJo SINE Alu -17 295 85 234 293 0 24 chr11 115241487 115241569 -33541903 + (CATATA)n Simple_repeat Simple_repeat 2 81 0 1585 335 72 22 chr11 115242050 115243055 -33540417 - HERVL LTR ERVL -911 4853 3799 1801 167 205 12 chr11 115243130 115243555 -33539917 - LTR22 LTR ERVK 0 509 3 276 280 36 4 chr11 115243783 115243945 -33539527 - HERVL LTR ERVL -2236 3528 3343 258 316 0 0 chr11 115244018 115244094 -33539378 + HERVL LTR ERVL 3208 3283 -2371 2278 108 0 3 chr11 115244101 115244398 -33539074 - AluSc SINE Alu -13 296 1 516 278 39 21 chr11 115244436 115244670 -33538802 - L1M4 LINE L1 -2009 4137 3900 244 291 46 33 chr11 115244939 115245090 -33538382 - L1M4 LINE L1 -2497 3649 3497 1788 157 7 11 chr11 115245106 115245392 -33538080 - AluJb SINE Alu -27 285 1 2259 102 3 0 chr11 115245591 115245884 -33537588 - AluSp SINE Alu -19 294 1 402 219 163 0 chr11 115246182 115246342 -33537130 - LTR50 LTR ERVL 0 795 610 526 237 72 7 chr11 115246591 115246743 -33536729 - LTR50 LTR ERVL -632 163 2 191 88 29 0 chr11 115246854 115246888 -33536584 + (CAA)n Simple_repeat Simple_repeat 2 36 0 692 302 54 51 chr11 115247806 115248197 -33535275 + LTR16B LTR ERVL 1 392 -72 856 238 0 0 chr11 115248207 115248375 -33535097 - FRAM SINE Alu -9 167 1 1347 213 41 38 chr11 115249985 115250328 -33533144 - MER2 DNA MER2_type 0 344 1 242 234 91 26 chr11 115250496 115250573 -33532899 - L2 LINE L2 0 3313 3232 1367 201 40 111 chr11 115250653 115251196 -33532276 - MLT1D LTR MaLR 0 505 1 236 279 16 0 chr11 115251229 115251290 -33532182 - L2 LINE L2 0 3313 3252 306 366 57 23 chr11 115251311 115251486 -33531986 - L2 LINE L2 -566 2748 2568 231 208 26 78 chr11 115253240 115253317 -33530155 + L3 LINE CR1 1271 1343 -234 248 380 65 0 chr11 115253334 115253442 -33530030 - L2 LINE L2 -15 3257 3143 2188 121 0 7 chr11 115253892 115254189 -33529283 - AluSg SINE Alu -15 295 1 266 358 52 8 chr11 115254797 115254931 -33528541 - L2 LINE L2 0 3272 3133 395 293 239 27 chr11 115255942 115256164 -33527308 + L2 LINE L2 3004 3272 0 181 372 83 38 chr11 115256345 115256740 -33526732 - L2 LINE L2 -828 2486 2074 770 269 92 18 chr11 115256879 115257161 -33526311 + LTR10D LTR ERV1 164 466 -47 28242 220 24 29 chr11 115257168 115264400 -33519072 + LTR54B-int LTR ERV1 275 7784 -1 1125 212 19 40 chr11 115264533 115264898 -33518574 + LTR10B LTR ERV1 157 547 0 636 284 65 19 chr11 115265242 115265457 -33518015 + MIR SINE MIR 29 253 -9 894 301 88 44 chr11 115266190 115267670 -33515802 - L1MEd LINE L1 -1951 4178 2634 846 308 60 67 chr11 115268349 115269248 -33514224 - L1MEd LINE L1 -766 1724 731 318 337 100 8 chr11 115269933 115270182 -33513290 - L1M4 LINE L1 -1299 4847 4576 510 286 92 73 chr11 115270658 115270856 -33512616 - MLT1L LTR MaLR -42 573 380 2148 127 3 3 chr11 115270856 115271155 -33512317 - AluSc SINE Alu -10 299 1 510 286 92 73 chr11 115271155 115271393 -33512079 - MLT1L LTR MaLR -235 380 129 297 0 0 0 chr11 115271723 115271756 -33511716 + (TG)n Simple_repeat Simple_repeat 2 34 0 32 47 0 16 chr11 115271944 115271969 -33511503 + AT_rich Low_complexity Low_complexity 1 25 -38 2075 141 3 0 chr11 115271969 115272260 -33511212 - AluSq SINE Alu -17 296 5 32 47 0 16 chr11 115272260 115272298 -33511174 + AT_rich Low_complexity Low_complexity 25 63 0 385 288 89 52 chr11 115272556 115272998 -33510474 - L1M4 LINE L1 -2558 3588 3125 794 169 284 0 chr11 115273084 115273285 -33510187 + LTR54B LTR ERV1 1 258 -240 696 284 52 34 chr11 115273288 115273676 -33509796 - HAL1b LINE L1 -758 590 196 24 32 0 0 chr11 115273848 115273879 -33509593 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr11 115274409 115274430 -33509042 + AT_rich Low_complexity Low_complexity 1 21 0 199 296 56 0 chr11 115275218 115275289 -33508183 + MIR SINE MIR 96 170 -92 180 152 0 0 chr11 115275390 115275423 -33508049 + (TTA)n Simple_repeat Simple_repeat 1 33 0 212 287 70 70 chr11 115276964 115277121 -33506351 + MIR SINE MIR 97 253 -9 302 277 67 25 chr11 115277973 115278092 -33505380 + MIR SINE MIR 29 152 -110 181 380 109 11 chr11 115278351 115278535 -33504937 - L2 LINE L2 -212 3060 2859 1397 231 39 3 chr11 115279066 115279377 -33504095 - MER21B LTR ERV1 -490 373 52 282 320 0 0 chr11 115279382 115279457 -33504015 - MER21B LTR ERV1 -769 94 20 252 196 36 18 chr11 115279493 115279549 -33503923 - MER21B LTR ERV1 -795 68 12 1485 197 51 17 chr11 115279558 115279914 -33503558 - LOR1b LTR ERV1 0 461 94 2336 141 76 0 chr11 115279915 115280312 -33503160 + MSTA LTR MaLR 1 427 -1 8226 178 30 11 chr11 115280313 115281928 -33501544 + MSTA-int LTR MaLR 1 1645 -6 1921 164 112 0 chr11 115281934 115282319 -33501153 + MSTA LTR MaLR 1 428 0 461 176 0 11 chr11 115282324 115282415 -33501057 - LOR1a LTR ERV1 -407 90 1 603 169 0 25 chr11 115282430 115282548 -33500924 - MER31A LTR ERV1 -370 115 1 181 342 13 0 chr11 115282567 115282643 -33500829 - L2 LINE L2 -954 2360 2284 1035 260 70 31 chr11 115282662 115283077 -33500395 - MLT1J2 LTR MaLR -19 431 1 215 202 32 53 chr11 115283121 115283215 -33500257 - L2 LINE L2 -1083 2231 2140 501 316 61 24 chr11 115283316 115283563 -33499909 - MIR SINE MIR 0 262 7 187 259 0 69 chr11 115283764 115283822 -33499650 - L2 LINE L2 -73 3240 3187 364 278 0 11 chr11 115284871 115284961 -33498511 + MIR SINE MIR 55 143 -119 5752 79 34 3 chr11 115285068 115285824 -33497648 + LTR17 LTR ERV1 1 780 0 2419 91 0 3 chr11 115286013 115286321 -33497151 - AluSc SINE Alu -2 307 1 270 360 154 0 chr11 115287387 115287523 -33495949 + L2 LINE L2 3116 3272 0 281 316 65 32 chr11 115288052 115288207 -33495265 - MIR SINE MIR -92 170 11 212 288 42 34 chr11 115288736 115288854 -33494618 - L3b LINE CR1 -216 1367 1249 416 371 128 16 chr11 115289516 115289639 -33493833 + L2 LINE L2 2505 2613 -701 597 14 0 0 chr11 115289639 115289709 -33493763 + (TA)n Simple_repeat Simple_repeat 2 71 0 416 371 128 16 chr11 115289709 115289906 -33493566 + L2 LINE L2 2613 2861 -453 227 373 106 37 chr11 115290004 115290221 -33493251 + L2 LINE L2 3036 3267 -5 1280 116 80 9 chr11 115290262 115290487 -33492985 + L1MC1 LINE L1 6093 6333 0 357 333 74 45 chr11 115290503 115290746 -33492726 + L2 LINE L2 2831 3080 -192 244 350 121 0 chr11 115291044 115291184 -33492288 + MIR SINE MIR 50 206 -56 319 214 152 9 chr11 115291682 115291794 -33491678 - MIR SINE MIR -50 212 85 230 368 32 8 chr11 115292696 115292821 -33490651 + MIR SINE MIR 90 217 -45 1812 272 120 78 chr11 115293155 115294775 -33488697 + L2 LINE L2 1606 3305 -8 853 109 22 0 chr11 115294887 115295025 -33488447 - MER1A DNA MER1_type -14 515 375 1810 117 4 0 chr11 115295052 115295309 -33488163 - MER1A DNA MER1_type -228 301 44 214 293 57 28 chr11 115295336 115295442 -33488030 - MIR3 SINE MIR -8 200 92 207 327 72 51 chr11 115296718 115296912 -33486560 - MIR SINE MIR -62 200 3 888 95 0 0 chr11 115298940 115299056 -33484416 + AluY SINE Alu 187 302 -9 6177 103 52 2 chr11 115299255 115300294 -33483178 - L1MA2 LINE L1 0 7723 6633 2233 139 31 19 chr11 115300294 115300654 -33482818 + THE1B LTR MaLR 1 364 0 8302 135 101 3 chr11 115300656 115302023 -33481449 + THE1B-int LTR MaLR 4 1517 -63 2245 140 0 6 chr11 115302023 115302337 -33481135 + AluSx SINE Alu 1 312 0 8302 135 101 3 chr11 115302337 115302395 -33481077 + THE1B-int LTR MaLR 1517 1568 -12 1251 89 0 52 chr11 115302499 115302632 -33480840 + THE1B-int LTR MaLR 1379 1498 -82 2125 152 0 16 chr11 115302632 115302947 -33480525 + AluSx SINE Alu 1 310 -2 1251 89 0 52 chr11 115302947 115303026 -33480446 + THE1B-int LTR MaLR 1498 1580 0 1795 166 69 26 chr11 115303026 115303375 -33480097 + THE1B LTR MaLR 1 364 0 227 157 20 0 chr11 115303376 115303427 -33480045 - L1MA2 LINE L1 -929 6636 6585 1579 113 4 0 chr11 115303428 115303657 -33479815 - L1PA8 LINE L1 -2 6170 5941 4044 162 100 2 chr11 115303662 115304485 -33478987 - L1MA2 LINE L1 -4963 2602 1700 747 261 36 9 chr11 115304479 115304809 -33478663 - L1M4 LINE L1 -2100 4046 3708 * 247 191 0 0 chr11 115304862 115304904 -33478568 - Tigger3(Golem) DNA MER2_type -82 2947 2906 * 318 214 0 0 chr11 115304903 115304959 -33478513 - Tigger3(Golem) DNA MER2_type -2973 56 1 597 247 68 26 chr11 115305041 115305231 -33478241 + MER6B DNA MER2_type 13 210 0 886 300 0 0 chr11 115305305 115305538 -33477934 + LTR53 LTR ERVL 189 421 -98 675 232 30 20 chr11 115306342 115306540 -33476932 + MLT2B3 LTR ERVL 1 200 -354 345 180 0 0 chr11 115306544 115306605 -33476867 + MLT2D LTR ERVL 238 298 -255 4375 176 25 9 chr11 115306615 115307431 -33476041 + ERVL LTR ERVL 4296 5124 -640 292 122 93 0 chr11 115307462 115307783 -33475689 + (TA)n Simple_repeat Simple_repeat 1 350 0 31 58 0 0 chr11 115307795 115307847 -33475625 + AT_rich Low_complexity Low_complexity 1 52 0 311 175 63 22 chr11 115307863 115308311 -33475161 + (TATAA)n Simple_repeat Simple_repeat 1 466 0 274 103 91 12 chr11 115308351 115308516 -33474956 + (TA)n Simple_repeat Simple_repeat 2 179 0 180 102 61 0 chr11 115308539 115308588 -33474884 + (TATAA)n Simple_repeat Simple_repeat 3 54 0 237 102 115 0 chr11 115308623 115308780 -33474692 + (TA)n Simple_repeat Simple_repeat 1 175 0 736 181 0 27 chr11 115308781 115308930 -33474542 - ERVL LTR ERVL -640 5124 4980 241 145 72 7 chr11 115308946 115309084 -33474388 + (TA)n Simple_repeat Simple_repeat 1 147 0 6780 214 16 16 chr11 115309187 115311689 -33471783 - L1PA16 LINE L1 -2 6815 4332 3568 241 30 12 chr11 115311696 115312833 -33470639 - L1PA16 LINE L1 -4110 2687 1509 361 259 28 35 chr11 115313696 115313839 -33469633 - L1PA16 LINE L1 -5276 1511 1370 1103 360 31 16 chr11 115313877 115314455 -33469017 - L1PA16 LINE L1 -6200 587 1 490 234 92 27 chr11 115315008 115315192 -33468280 + MER117 DNA MER1_type 2 197 0 373 270 0 0 chr11 115315211 115315285 -33468187 - MIR3 SINE MIR -26 182 109 27 0 0 0 chr11 115315876 115315903 -33467569 + AT_rich Low_complexity Low_complexity 1 27 0 203 321 9 54 chr11 115316866 115316978 -33466494 - MIR3 SINE MIR -97 111 5 372 248 145 0 chr11 115317243 115317360 -33466112 - MIR3 SINE MIR -3 205 72 431 328 27 6 chr11 115317451 115317634 -33465838 + MER117 DNA MER1_type 11 197 0 1745 184 24 12 chr11 115317799 115318136 -33465336 + MER61A LTR ERV1 1 341 -2 543 336 146 48 chr11 115318761 115318834 -33464638 + L2 LINE L2 2307 2371 -901 1698 166 65 45 chr11 115318834 115319189 -33464283 + MLT1A1 LTR MaLR 1 362 -3 543 336 146 48 chr11 115319189 115319996 -33463476 + L2 LINE L2 2371 3270 -2 2138 114 0 17 chr11 115320376 115320673 -33462799 - AluSc SINE Alu -17 292 1 193 333 0 0 chr11 115321014 115321065 -33462407 + L3 LINE CR1 1526 1576 -1 257 294 37 57 chr11 115321097 115321234 -33462238 + MIR3 SINE MIR 15 148 -93 262 272 6 2 chr11 115321259 115321327 -33462145 + MIR SINE MIR 91 161 -47 22 0 0 0 chr11 115321578 115321600 -33461872 + AT_rich Low_complexity Low_complexity 1 22 0 253 290 59 45 chr11 115322753 115322944 -33460528 - MIR3 SINE MIR -62 200 3 368 279 75 19 chr11 115324239 115324400 -33459072 + MIR SINE MIR 82 251 -11 203 167 33 100 chr11 115325268 115325328 -33458144 - L2 LINE L2 0 3313 3258 624 181 6 56 chr11 115325516 115325880 -33457592 + (TATATG)n Simple_repeat Simple_repeat 1 345 0 567 246 23 0 chr11 115325887 115326062 -33457410 + (TA)n Simple_repeat Simple_repeat 2 180 0 216 275 75 25 chr11 115327379 115327459 -33456013 - L2 LINE L2 -936 2378 2295 716 307 128 35 chr11 115327517 115328025 -33455447 - L2 LINE L2 -1138 2176 1622 506 327 186 21 chr11 115328090 115328524 -33454948 + L2 LINE L2 1747 2108 -1206 1653 211 58 3 chr11 115328524 115328870 -33454602 - MLT1A1 LTR MaLR 0 365 1 506 327 186 21 chr11 115328870 115329132 -33454340 + L2 LINE L2 2108 2558 -756 351 250 115 40 chr11 115330994 115331194 -33452278 - LTR33A LTR ERVL -9 514 300 276 273 128 15 chr11 115331192 115331492 -33451980 - LTR50 LTR ERVL -350 445 7 * 2592 68 0 0 chr11 115331503 115331814 -33451658 + AluY SINE Alu 1 311 0 3003 188 40 35 chr11 115332027 115332443 -33451029 - LTR58 LTR ERV1 0 679 257 1573 185 7 3 chr11 115332443 115332729 -33450743 - AluSx SINE Alu -25 287 1 3003 188 40 35 chr11 115332729 115332988 -33450484 - LTR58 LTR ERV1 -422 257 1 2240 120 3 0 chr11 115333017 115333317 -33450155 - AluSx SINE Alu -11 301 1 2103 277 45 14 chr11 115333321 115334078 -33449394 - LTR58-int LTR ERV1 -24 6652 5873 1323 312 69 48 chr11 115334968 115336770 -33446702 - LTR58-int LTR ERV1 -1636 6120 4554 620 353 33 27 chr11 115337061 115338148 -33445324 - LTR58-int LTR ERV1 -3633 3930 2509 710 258 38 60 chr11 115338839 115339157 -33444315 - MER66-int LTR ERV1 -4029 2647 2337 342 338 32 0 chr11 115339396 115339550 -33443922 - MER66-int LTR ERV1 -4578 2098 1940 387 366 11 21 chr11 115339875 115340159 -33443313 - MER66-int LTR ERV1 -5048 1628 1348 865 214 12 0 chr11 115341086 115341254 -33442218 - MER66-int LTR ERV1 -2767 1518 1349 3265 188 11 47 chr11 115341821 115342522 -33440950 - LTR58 LTR ERV1 -1 678 3 360 291 80 40 chr11 115343313 115343464 -33440008 + MER5A DNA MER1_type 27 183 -6 230 0 0 32 chr11 115343627 115343658 -33439814 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 22 56 0 0 chr11 115344376 115344412 -33439060 + AT_rich Low_complexity Low_complexity 1 36 0 253 299 22 13 chr11 115344454 115344696 -33438776 + L1ME LINE L1 5491 5740 -381 282 154 23 115 chr11 115344781 115344911 -33438561 - Charlie7 DNA MER1_type -75 2537 2420 373 186 64 135 chr11 115345021 115345807 -33437665 - L1MB7 LINE L1 0 6184 5448 1122 171 40 0 chr11 115345807 115346029 -33437443 + MLT1B LTR MaLR 1 231 -159 1261 221 7 25 chr11 115346143 115346424 -33437048 + AluJo SINE Alu 16 291 -21 1212 160 4 13 chr11 115348107 115348338 -33435134 + MLT1B LTR MaLR 162 390 0 936 191 66 11 chr11 115348354 115348677 -33434795 - L1MB7 LINE L1 -724 5446 5106 800 247 36 58 chr11 115348705 115349096 -33434376 - L1ME2 LINE L1 -5 6161 5755 2876 263 101 39 chr11 115349106 115350765 -33432707 - Charlie7 DNA MER1_type -381 2231 471 240 317 85 0 chr11 115351439 115351521 -33431951 + L2 LINE L2 3225 3313 0 27 0 0 0 chr11 115351651 115351678 -33431794 + AT_rich Low_complexity Low_complexity 1 27 0 246 220 25 8 chr11 115351764 115351835 -33431637 + CT-rich Low_complexity Low_complexity 1 72 0 378 42 0 0 chr11 115351835 115351883 -33431589 + (TG)n Simple_repeat Simple_repeat 2 49 0 6815 74 7 20 chr11 115352538 115354194 -33429278 - SVA Other Other -723 1386 1 2452 66 0 17 chr11 115355163 115355465 -33428007 + AluY SINE Alu 1 297 -14 770 212 172 24 chr11 115355471 115355780 -33427692 + MER66A LTR ERV1 171 385 -93 2051 124 7 10 chr11 115355780 115356086 -33427386 + AluSq SINE Alu 1 305 -8 1119 150 0 0 chr11 115356087 115356247 -33427225 + AluSc SINE Alu 132 291 -18 458 180 11 11 chr11 115356251 115356340 -33427132 + MER66B LTR ERV1 391 479 -7 21 71 0 0 chr11 115356839 115356881 -33426591 + AT_rich Low_complexity Low_complexity 1 42 0 2124 124 0 0 chr11 115357186 115357476 -33425996 + AluSg1 SINE Alu 1 290 -19 1209 269 58 55 chr11 115357478 115358084 -33425388 + L2 LINE L2 2703 3304 -9 1874 183 39 17 chr11 115358093 115358509 -33424963 + L1MA9 LINE L1 5888 6312 0 1906 150 0 14 chr11 115358570 115358898 -33424574 - AluSx SINE Alu 0 324 1 2083 124 40 28 chr11 115359379 115359793 -33423679 - THE1B LTR MaLR -6 422 1 710 227 18 25 chr11 115359855 115360018 -33423454 + FRAM SINE Alu 5 166 0 1354 214 18 14 chr11 115360155 115360435 -33423037 + AluJo SINE Alu 5 285 -17 215 222 0 19 chr11 115360588 115360642 -33422830 + GA-rich Low_complexity Low_complexity 3 55 0 216 346 31 16 chr11 115360660 115360787 -33422685 - MIR SINE MIR -15 247 119 498 268 70 0 chr11 115361342 115361484 -33421988 - MIR SINE MIR -2 260 109 1430 246 61 38 chr11 115362868 115363375 -33420097 - MER74A LTR ERVL 0 558 40 455 251 26 28 chr11 115363597 115363842 -33419630 - MER41B LTR ERV1 -208 427 49 25 0 0 0 chr11 115363849 115363874 -33419598 + AT_rich Low_complexity Low_complexity 1 25 0 2610 271 101 63 chr11 115364635 115365697 -33417775 - L2 LINE L2 -1 3312 2114 230 216 0 0 chr11 115365697 115365748 -33417724 + L1M4 LINE L1 5706 5756 -418 2610 271 101 63 chr11 115365748 115366169 -33417303 - L2 LINE L2 -1199 2114 1710 243 167 0 0 chr11 115366860 115366902 -33416570 - 5S rRNA rRNA -79 42 1 641 349 44 6 chr11 115367178 115367542 -33415930 - MERVL LTR ERVL -2280 3484 3107 291 98 176 0 chr11 115367544 115367595 -33415877 + MER67D LTR ERV1 1 60 -454 333 118 0 0 chr11 115367597 115367648 -33415824 + (TTTCC)n Simple_repeat Simple_repeat 4 54 0 282 56 0 0 chr11 115367647 115367683 -33415789 + (TCC)n Simple_repeat Simple_repeat 1 36 0 * 1558 209 3 34 chr11 115367683 115368003 -33415469 - AluJo SINE Alu -2 310 1 1048 195 89 124 chr11 115368003 115368044 -33415428 + MER67D LTR ERV1 45 86 -428 644 0 0 13 chr11 115368044 115368121 -33415351 + (TTTC)n Simple_repeat Simple_repeat 1 76 0 1048 195 89 124 chr11 115368121 115368449 -33415023 + MER67D LTR ERV1 86 396 -118 2409 64 0 0 chr11 115368449 115368744 -33414728 + AluY SINE Alu 3 297 -14 1048 195 89 124 chr11 115368744 115368856 -33414616 + MER67D LTR ERV1 396 510 -4 292 301 37 7 chr11 115368994 115369130 -33414342 - MERVL LTR ERVL -4473 1012 873 1824 175 125 8 chr11 115369160 115369543 -33413929 - MSTA LTR MaLR 0 428 1 251 237 21 21 chr11 115369827 115369920 -33413552 - MERVL LTR ERVL -5078 576 484 229 0 83 0 chr11 115370310 115370346 -33413126 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 34801 31 0 1 chr11 115370346 115375539 -33407933 - L1PA3 LINE L1 -10 6145 955 21 0 0 0 chr11 115375602 115375623 -33407849 + AT_rich Low_complexity Low_complexity 1 21 0 233 224 0 0 chr11 115375980 115376029 -33407443 + (CAATT)n Simple_repeat Simple_repeat 3 51 0 956 241 64 30 chr11 115376029 115376357 -33407115 - MER21B LTR ERV1 -145 718 380 676 167 50 158 chr11 115376413 115376652 -33406820 - MER21B LTR ERV1 -632 231 19 6184 129 54 30 chr11 115376652 115376783 -33406689 + Tigger3b DNA MER2_type 2 128 -2900 1812 144 238 46 chr11 115376783 115377305 -33406167 + LTR29 LTR ERV1 1 622 0 6184 129 54 30 chr11 115377305 115377885 -33405587 + Tigger3b DNA MER2_type 128 756 -2272 2094 169 19 3 chr11 115377885 115378252 -33405220 - MER83C LTR ERV1 0 373 1 6184 129 54 30 chr11 115378252 115378740 -33404732 + Tigger3b DNA MER2_type 756 1231 0 244 254 51 7 chr11 115379046 115379184 -33404288 + L1M4 LINE L1 2217 2360 -3786 268 221 26 13 chr11 115379552 115379629 -33403843 - L1MEd LINE L1 -6035 84 7 283 333 36 36 chr11 115379630 115379855 -33403617 + L2 LINE L2 2623 2847 -467 204 337 71 60 chr11 115380226 115380508 -33402964 + L2 LINE L2 2968 3252 -20 244 225 94 47 chr11 115381274 115381362 -33402110 - MIR SINE MIR -69 139 64 426 311 147 48 chr11 115381472 115382256 -33401216 - L2 LINE L2 0 3313 2453 271 325 94 8 chr11 115382620 115382737 -33400735 + L2 LINE L2 2713 2839 -475 1268 134 40 84 chr11 115382920 115383095 -33400377 - L1MA7 LINE L1 -6 6285 6129 1558 193 7 30 chr11 115383095 115383396 -33400076 + AluJo SINE Alu 1 294 -18 1268 134 40 84 chr11 115383396 115383541 -33399931 - L1MA7 LINE L1 -162 6129 5979 336 351 148 54 chr11 115384467 115385866 -33397606 - L2 LINE L2 0 3272 1737 220 205 0 0 chr11 115385962 115386001 -33397471 + GA-rich Low_complexity Low_complexity 2 40 0 1840 174 58 6 chr11 115387142 115387487 -33395985 - MLT1A1 LTR MaLR 0 365 3 670 233 63 87 chr11 115387592 115387845 -33395627 - MER102a DNA MER1_type 0 330 84 1554 214 8 32 chr11 115388649 115389023 -33394449 + MLT1A1 LTR MaLR 1 365 0 347 161 0 0 chr11 115390826 115390882 -33392590 + L2 LINE L2 3217 3272 0 291 297 0 14 chr11 115390996 115391070 -33392402 + MIR SINE MIR 40 112 -150 1730 210 91 0 chr11 115391871 115392233 -33391239 - MSTD LTR MaLR 0 396 2 300 298 122 15 chr11 115392628 115392759 -33390713 - L2 LINE L2 -9 3263 3119 23 0 0 0 chr11 115393288 115393311 -33390161 + AT_rich Low_complexity Low_complexity 1 23 0 446 328 154 6 chr11 115393734 115394097 -33389375 - L1M4 LINE L1 -3108 3038 2622 24 32 0 0 chr11 115394744 115394775 -33388697 + AT_rich Low_complexity Low_complexity 1 31 0 743 140 0 0 chr11 115394782 115394889 -33388583 - AluJb SINE Alu -195 117 11 35 41 0 0 chr11 115395096 115395145 -33388327 + AT_rich Low_complexity Low_complexity 1 49 0 879 234 70 13 chr11 115395281 115395580 -33387892 + MLT1C LTR MaLR 7 322 -145 1764 186 68 2 chr11 115395594 115395993 -33387479 - L1MA9 LINE L1 -22 6290 5866 819 189 0 13 chr11 115396022 115396181 -33387291 + MLT1C LTR MaLR 311 467 0 257 330 115 24 chr11 115396281 115396490 -33386982 + L2 LINE L2 2247 2474 -840 1746 62 0 0 chr11 115397032 115397242 -33386230 - AluY SINE Alu -101 210 1 416 165 0 132 chr11 115397290 115397411 -33386061 - FRAM SINE Alu -13 163 59 322 293 129 0 chr11 115397466 115397582 -33385890 + L2 LINE L2 3179 3309 -4 2130 121 0 7 chr11 115398494 115398792 -33384680 - AluSq SINE Alu -17 296 1 23 68 0 0 chr11 115398862 115398906 -33384566 + AT_rich Low_complexity Low_complexity 1 44 0 305 308 106 3 chr11 115399232 115399409 -33384063 - MIR SINE MIR -19 243 2 327 263 47 17 chr11 115399575 115399705 -33383767 + MIR SINE MIR 16 151 -66 1134 190 70 103 chr11 115400405 115400862 -33382610 - MLT1C LTR MaLR 0 467 26 2235 108 3 0 chr11 115401056 115401362 -33382110 + AluSx SINE Alu 1 307 -5 718 276 39 35 chr11 115401446 115401703 -33381769 + MIR SINE MIR 2 259 -3 2058 98 0 0 chr11 115401857 115402121 -33381351 + AluSq SINE Alu 35 298 -15 2730 159 26 6 chr11 115403033 115403536 -33379936 - L1PA16 LINE L1 -1 6165 5653 252 276 237 0 chr11 115403791 115403867 -33379605 + L2 LINE L2 3147 3240 -32 2135 119 0 0 chr11 115403876 115404161 -33379311 - AluSc SINE Alu -24 285 1 285 98 0 0 chr11 115404179 115404220 -33379252 + (CA)n Simple_repeat Simple_repeat 2 42 0 344 281 141 7 chr11 115405872 115406007 -33377465 - MIR3 SINE MIR -17 191 39 718 304 42 23 chr11 115406388 115406605 -33376867 - MIR SINE MIR -6 256 36 743 272 129 31 chr11 115406787 115407533 -33375939 - L1M4 LINE L1 -840 5306 4488 25 0 0 0 chr11 115407642 115407667 -33375805 + AT_rich Low_complexity Low_complexity 1 25 0 2021 129 0 20 chr11 115407757 115408060 -33375412 + AluSx SINE Alu 1 297 -15 314 174 0 43 chr11 115408118 115408187 -33375285 - FLAM_A SINE Alu 0 133 68 434 167 59 0 chr11 115408429 115408531 -33374941 - L1M4 LINE L1 -2160 3986 3879 444 362 96 19 chr11 115408750 115409167 -33374305 - HAL1 LINE L1 -845 1662 1214 519 179 0 0 chr11 115409172 115409256 -33374216 - AluS SINE Alu -228 84 1 250 329 104 9 chr11 115409438 115409660 -33373812 - L1MEd LINE L1 -5286 833 591 683 291 36 106 chr11 115409674 115410204 -33373268 - L2 LINE L2 -1 3312 2820 1011 311 69 24 chr11 115410214 115410747 -33372725 - L1MEd LINE L1 -5561 558 2 2296 103 3 0 chr11 115411182 115411483 -33371989 + AluSp SINE Alu 1 302 -11 293 247 62 0 chr11 115411946 115412043 -33371429 + L2 LINE L2 2284 2386 -928 23 0 0 0 chr11 115412927 115412950 -33370522 + AT_rich Low_complexity Low_complexity 1 23 0 2301 84 7 10 chr11 115413087 115413384 -33370088 - AluSc SINE Alu -13 296 1 1567 196 124 7 chr11 115416871 115417331 -33366141 + Charlie1b DNA MER1_type 5 518 -5 234 343 89 41 chr11 115417607 115417776 -33365696 - MER5A DNA MER1_type -1 188 12 261 240 30 100 chr11 115417788 115417888 -33365584 + L2 LINE L2 3180 3272 0 265 294 18 37 chr11 115418061 115418170 -33365302 - MIR SINE MIR -6 256 150 1147 268 95 31 chr11 115418561 115419573 -33363899 - L1M4 LINE L1 -2252 3894 2818 250 294 0 0 chr11 115420265 115420333 -33363139 + L2 LINE L2 1776 1843 -1471 395 350 0 13 chr11 115420600 115420757 -33362715 + L2 LINE L2 2665 2819 -495 1612 204 78 30 chr11 115420841 115421238 -33362234 + MER70A LTR ERVL 57 472 0 2295 60 0 21 chr11 115421340 115421648 -33361824 - AluY SINE Alu 0 307 6 2073 184 0 25 chr11 115421944 115422346 -33361126 + MER57A LTR ERV1 1 392 -11 1388 165 54 198 chr11 115422965 115423231 -33360241 - LTR8A LTR ERV1 0 727 424 8340 45 0 1 chr11 115423231 115425034 -33358438 - L1PA5 LINE L1 -2 6152 4351 1388 165 54 198 chr11 115425034 115425616 -33357856 - LTR8A LTR ERV1 -303 424 1 753 173 207 0 chr11 115425783 115425962 -33357510 - MER20 DNA MER1_type 0 219 4 2916 128 64 0 chr11 115426317 115426833 -33356639 + MER34C LTR ERV1 37 585 0 2348 163 114 86 chr11 115428802 115429344 -33354128 - LTR48 LTR ERV1 0 787 216 2499 141 41 2 chr11 115429344 115429756 -33353716 - MSTA LTR MaLR 0 428 1 2348 163 114 86 chr11 115429756 115429979 -33353493 - LTR48 LTR ERV1 -571 216 1 2068 78 0 8 chr11 115430972 115431228 -33352244 + AluSp SINE Alu 34 287 -26 2851 121 76 12 chr11 115431586 115432100 -33351372 + LTR10A LTR ERV1 1 547 -62 272 282 0 14 chr11 115432641 115432712 -33350760 + CT-rich Low_complexity Low_complexity 5 74 0 970 113 21 138 chr11 115432795 115433034 -33350438 + L1MA1 LINE L1 6091 6301 -1 23 33 0 0 chr11 115433114 115433144 -33350328 + AT_rich Low_complexity Low_complexity 1 30 0 390 239 192 0 chr11 115433369 115433536 -33349936 + MIR SINE MIR 54 252 -10 284 208 0 14 chr11 115434599 115434671 -33348801 + CT-rich Low_complexity Low_complexity 2 72 0 581 271 85 20 chr11 115435422 115435621 -33347851 + MIR SINE MIR 3 214 -48 234 125 0 0 chr11 115435626 115435658 -33347814 - MER5B DNA MER1_type -1 177 146 1454 181 113 18 chr11 115435665 115435991 -33347481 + MSTD LTR MaLR 1 357 -39 333 319 26 21 chr11 115436157 115436348 -33347124 + HERV30 LTR ERV1 5630 5821 -2436 2159 118 0 0 chr11 115436348 115436654 -33346818 - AluY SINE Alu -3 308 3 865 192 54 127 chr11 115436655 115436982 -33346490 - MER67D LTR ERV1 -128 386 87 608 0 0 14 chr11 115436982 115437055 -33346417 + (GAAA)n Simple_repeat Simple_repeat 1 72 0 865 192 54 127 chr11 115437055 115437096 -33346376 - MER67D LTR ERV1 -427 87 45 1558 209 3 34 chr11 115437096 115437416 -33346056 + AluJo SINE Alu 1 310 -2 291 54 0 0 chr11 115437418 115437455 -33346017 + (GGA)n Simple_repeat Simple_repeat 3 39 0 * 423 98 0 0 chr11 115437454 115437515 -33345957 + (GGAAA)n Simple_repeat Simple_repeat 4 64 0 291 98 176 0 chr11 115437517 115437568 -33345904 - MER67D LTR ERV1 -454 60 1 498 359 46 6 chr11 115437570 115437896 -33345576 + ERVL LTR ERVL 3107 3445 -2319 2399 70 3 0 chr11 115437996 115438297 -33345175 + AluY SINE Alu 1 302 -9 400 338 74 24 chr11 115438298 115438594 -33344878 + L1 LINE L1 4239 4549 -1597 526 290 69 45 chr11 115439861 115440106 -33343366 - MIR SINE MIR -10 252 2 292 244 35 17 chr11 115440243 115440358 -33343114 + (TCTA)n Simple_repeat Simple_repeat 2 118 0 257 286 13 0 chr11 115440411 115440488 -33342984 + MLT1K LTR MaLR 163 240 -348 845 260 58 5 chr11 115440903 115441126 -33342346 + MIR SINE MIR 2 236 -26 1346 190 96 59 chr11 115443052 115443530 -33339942 - L1ME2 LINE L1 -2 6162 5667 2988 148 25 8 chr11 115443547 115444061 -33339411 - L1MD3 LINE L1 -15 7980 7458 828 166 0 45 chr11 115444062 115444219 -33339253 + MSTB1 LTR MaLR 1 150 -276 383 74 0 0 chr11 115444221 115444275 -33339197 - MADE1 DNA Mariner 0 80 27 2394 68 7 0 chr11 115444289 115444582 -33338890 - AluSq SINE Alu -18 295 1 963 150 52 56 chr11 115444625 115444838 -33338634 + MSTB1 LTR MaLR 158 369 -63 715 139 0 0 chr11 115444838 115444953 -33338519 - AluSg/x SINE Alu -1 309 195 1983 127 0 0 chr11 115444953 115445220 -33338252 - AluSx SINE Alu -45 267 1 478 69 28 0 chr11 115445220 115445292 -33338180 + MSTB1 LTR MaLR 359 432 0 1199 214 71 75 chr11 115445349 115445760 -33337712 - MLT1D LTR MaLR -96 409 1 2864 207 50 80 chr11 115445786 115446704 -33336768 - L1MC3 LINE L1 -809 6976 6086 2701 202 60 14 chr11 115446806 115447854 -33335618 - L1ME2 LINE L1 -743 5403 4563 191 380 23 23 chr11 115448522 115448651 -33334821 + L2 LINE L2 2716 2844 -470 282 301 30 94 chr11 115448681 115448884 -33334588 + L2 LINE L2 3041 3230 -42 249 305 62 46 chr11 115449681 115449849 -33333623 + MIR SINE MIR 9 170 -38 1923 141 11 0 chr11 115451898 115452182 -33331290 - AluSx SINE Alu -25 287 1 215 380 27 40 chr11 115452876 115453100 -33330372 + L2 LINE L2 2816 3036 -236 854 177 244 12 chr11 115453175 115453430 -33330042 - MLT1B LTR MaLR -9 617 67 285 95 24 0 chr11 115454462 115454504 -33328968 - tRNA-Met-e tRNA tRNA -32 43 1 183 80 0 0 chr11 115454925 115454950 -33328522 + (TATG)n Simple_repeat Simple_repeat 4 28 0 383 364 106 50 chr11 115455868 115456225 -33327247 - L2 LINE L2 -32 3240 2864 2087 102 11 0 chr11 115456297 115456582 -33326890 + AluSg SINE Alu 1 288 -22 23 54 0 0 chr11 115457252 115457289 -33326183 + AT_rich Low_complexity Low_complexity 1 37 0 438 311 187 21 chr11 115457340 115457731 -33325741 - L2 LINE L2 -302 3011 2557 293 335 20 75 chr11 115457730 115457930 -33325542 + MIR SINE MIR 57 245 -17 * 1925 129 7 0 chr11 115458282 115458581 -33324891 + AluSx SINE Alu 3 303 0 406 258 45 0 chr11 115461004 115461093 -33322379 - L2 LINE L2 -8 3305 3213 2197 115 7 0 chr11 115462241 115462546 -33320926 - AluSc SINE Alu -2 307 1 184 379 71 43 chr11 115462841 115462981 -33320491 - L2 LINE L2 -3 3269 3126 25 0 0 0 chr11 115464432 115464457 -33319015 + AT_rich Low_complexity Low_complexity 1 25 0 870 298 83 22 chr11 115466202 115466612 -33316860 - LTR16A LTR ERVL 0 450 16 22 0 0 0 chr11 115466968 115466990 -33316482 + AT_rich Low_complexity Low_complexity 1 22 0 198 333 0 0 chr11 115467075 115467123 -33316349 - L2 LINE L2 -6 3266 3219 183 100 0 0 chr11 115467864 115467894 -33315578 + (CA)n Simple_repeat Simple_repeat 2 31 0 23 78 0 0 chr11 115468162 115468213 -33315259 + AT_rich Low_complexity Low_complexity 1 51 0 235 115 58 39 chr11 115468244 115468296 -33315176 + L2 LINE L2 3261 3313 0 350 278 0 10 chr11 115468314 115468411 -33315061 - MIR SINE MIR -104 158 63 332 311 93 25 chr11 115469137 115469298 -33314174 - L3 LINE CR1 -763 814 643 302 247 41 41 chr11 115469445 115469542 -33313930 + MIR SINE MIR 110 206 -56 234 0 0 0 chr11 115469817 115469843 -33313629 + (T)n Simple_repeat Simple_repeat 1 26 0 198 351 81 0 chr11 115470546 115470657 -33312815 - MIR SINE MIR -59 203 84 23 0 0 0 chr11 115470901 115470924 -33312548 + AT_rich Low_complexity Low_complexity 1 23 0 601 292 61 47 chr11 115471171 115471725 -33311747 + L1MEd LINE L1 608 1169 -4950 264 163 0 0 chr11 115471987 115472030 -33311442 - MLT1I LTR MaLR -256 153 111 442 302 25 0 chr11 115472055 115472214 -33311258 + L1MEd LINE L1 1369 1531 -4598 23 0 0 0 chr11 115472224 115472247 -33311225 + AT_rich Low_complexity Low_complexity 1 23 0 236 283 37 47 chr11 115472801 115472992 -33310480 + L1MEd LINE L1 2257 2445 -3684 452 283 147 36 chr11 115473018 115473214 -33310258 + L1MEd LINE L1 3171 3344 -2785 2017 120 11 0 chr11 115473214 115473498 -33309974 + AluSx SINE Alu 1 287 -25 452 283 147 36 chr11 115473498 115473987 -33309485 + L1MEd LINE L1 3344 3932 -2197 25 0 0 0 chr11 115474016 115474041 -33309431 + AT_rich Low_complexity Low_complexity 1 25 0 242 174 0 0 chr11 115474041 115474087 -33309385 - Alu SINE Alu 0 301 256 1967 159 138 5 chr11 115474418 115474796 -33308676 + MSTA LTR MaLR 1 428 0 335 171 61 37 chr11 115477685 115477767 -33305705 - L1MC4 LINE L1 -30 8012 7929 225 94 0 0 chr11 115477867 115477899 -33305573 + (CA)n Simple_repeat Simple_repeat 2 33 0 298 325 57 9 chr11 115477899 115478101 -33305371 - L1MC4 LINE L1 -139 7903 7689 408 277 130 28 chr11 115478139 115478316 -33305156 - L1MC4a LINE L1 -339 7469 7275 1616 234 141 131 chr11 115478499 115480135 -33303337 - L1MC4a LINE L1 -884 6924 5272 23 33 0 0 chr11 115480233 115480263 -33303209 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr11 115480274 115480305 -33303167 + AT_rich Low_complexity Low_complexity 1 31 0 387 316 120 11 chr11 115480557 115480823 -33302649 - L1MC4a LINE L1 -1089 5057 4763 514 288 54 17 chr11 115480848 115481096 -33302376 - L1MC4a LINE L1 -2177 3969 3715 1559 191 0 27 chr11 115481356 115481655 -33301817 - AluJo SINE Alu -10 302 12 2283 102 0 0 chr11 115481661 115481956 -33301516 - AluSq SINE Alu -15 298 4 389 270 181 26 chr11 115481977 115482203 -33301269 + MIR SINE MIR 2 262 0 269 340 37 52 chr11 115482527 115482718 -33300754 - L2 LINE L2 -497 2817 2630 * 418 331 52 23 chr11 115482715 115482887 -33300585 - MER5A DNA MER1_type -5 184 8 1408 225 113 9 chr11 115483016 115483345 -33300127 + MLT1A2 LTR MaLR 1 363 -11 284 330 136 64 chr11 115483673 115484584 -33298888 - L2 LINE L2 -974 2340 1364 415 264 271 7 chr11 115485179 115485334 -33298138 - MIR SINE MIR -22 240 45 2104 113 0 20 chr11 115486078 115486378 -33297094 - AluSx SINE Alu -18 294 1 2350 80 27 0 chr11 115486415 115486715 -33296757 - AluY SINE Alu -3 308 1 701 262 87 28 chr11 115487135 115487421 -33296051 + MLT1K LTR MaLR 284 586 -2 2730 0 3 0 chr11 115487785 115488078 -33295394 - AluYa5 SINE Alu -6 305 12 3863 202 33 24 chr11 115488256 115489027 -33294445 - L1MB7 LINE L1 -13 6407 5614 2062 111 7 0 chr11 115489027 115489336 -33294136 - AluSp SINE Alu 0 311 1 3863 202 33 24 chr11 115489336 115489661 -33293811 - L1MB7 LINE L1 -806 5614 5294 669 180 84 45 chr11 115489681 115489859 -33293613 - LTR34 LTR ERV1 -514 185 1 1115 214 17 13 chr11 115489919 115490153 -33293319 + LTR47B LTR ERVL 204 438 -5 2304 271 59 35 chr11 115490166 115491850 -33291622 - L1MB7 LINE L1 -3582 2800 967 486 220 76 17 chr11 115692281 115692399 -33091073 + MER39 LTR ERV1 9 133 -574 466 259 259 16 chr11 115692388 115692592 -33090880 + MER39 LTR ERV1 310 463 -244 * 2105 130 0 0 chr11 115692592 115692884 -33090588 + AluSx SINE Alu 1 292 -20 466 259 259 16 chr11 115692884 115692999 -33090473 + MER39 LTR ERV1 463 707 0 212 233 0 82 chr11 115692999 115693072 -33090400 + L2 LINE L2 3191 3257 -56 3632 122 90 2 chr11 115693223 115693822 -33089650 - MER39B LTR ERV1 0 653 2 820 200 45 30 chr11 115694009 115694209 -33089263 + MER3 DNA MER1_type 7 209 0 392 250 94 59 chr11 115694919 115695207 -33088265 + L1ME4a LINE L1 5529 5826 -295 21 95 0 0 chr11 115695327 115695390 -33088082 + AT_rich Low_complexity Low_complexity 1 63 0 196 100 50 0 chr11 115695965 115696005 -33087467 + GA-rich Low_complexity Low_complexity 1 42 0 388 336 0 35 chr11 115696593 115696736 -33086736 + L2 LINE L2 3134 3271 -1 414 276 221 0 chr11 115696869 115697032 -33086440 - MIR SINE MIR 0 262 64 2036 165 45 5 chr11 115698061 115698436 -33085036 + MLT1B LTR MaLR 1 390 0 491 265 63 74 chr11 115698641 115698830 -33084642 - MIR SINE MIR -20 242 56 2843 133 20 15 chr11 115699793 115700390 -33083082 + MER4E LTR ERV1 1 766 0 277 299 147 11 chr11 115700395 115700572 -33082900 - L2 LINE L2 0 3313 3113 22 0 0 0 chr11 115702166 115702188 -33081284 + AT_rich Low_complexity Low_complexity 1 22 0 396 300 115 38 chr11 115702960 115703307 -33080165 + L1ME4a LINE L1 5547 5920 -201 482 302 109 8 chr11 115703354 115703602 -33079870 - L2 LINE L2 -12 3301 3029 21 0 0 0 chr11 115705175 115705196 -33078276 + AT_rich Low_complexity Low_complexity 1 21 0 556 303 122 31 chr11 115706388 115706836 -33076636 + MLT1G1 LTR MaLR 13 593 -2 6876 174 36 37 chr11 115708234 115708446 -33075026 - L1MA10 LINE L1 -3 6331 6120 1914 106 4 0 chr11 115708446 115708701 -33074771 - AluSx SINE Alu -15 297 42 6876 174 36 37 chr11 115708701 115711059 -33072413 - L1MA10 LINE L1 -214 6120 3787 230 356 122 23 chr11 115711484 115711787 -33071685 + L2 LINE L2 2920 3252 -61 255 310 54 23 chr11 115712280 115712409 -33071063 + MIR SINE MIR 89 221 -41 405 325 95 54 chr11 115712584 115713264 -33070208 - L2 LINE L2 -54 3218 2517 1174 171 120 72 chr11 115713608 115714005 -33069467 - MSTD LTR MaLR 0 457 23 299 269 24 90 chr11 115714502 115714669 -33068803 + Charlie8 DNA MER1_type 4 159 -2258 777 101 29 0 chr11 115714720 115714858 -33068614 + (TATAG)n Simple_repeat Simple_repeat 1 142 0 269 280 70 0 chr11 115715003 115715103 -33068369 + Charlie8 DNA MER1_type 359 465 -1952 293 203 101 0 chr11 115715203 115715272 -33068200 + MER5B DNA MER1_type 103 178 0 394 379 52 19 chr11 115716644 115716855 -33066617 + MIR SINE MIR 28 245 -17 180 158 0 0 chr11 115716862 115716900 -33066572 + (CAT)n Simple_repeat Simple_repeat 2 39 0 23 33 0 0 chr11 115717485 115717515 -33065957 + AT_rich Low_complexity Low_complexity 1 30 0 2277 105 0 0 chr11 115717518 115717814 -33065658 - AluSc SINE Alu -13 296 1 483 285 65 5 chr11 115717942 115718156 -33065316 - L1ME4a LINE L1 -286 5835 5609 21 82 0 0 chr11 115718343 115718392 -33065080 + AT_rich Low_complexity Low_complexity 1 49 0 271 330 19 29 chr11 115718605 115718814 -33064658 - L1ME LINE L1 -280 6235 6029 1878 163 0 3 chr11 115719200 115719500 -33063972 - AluSx SINE Alu -13 299 1 1721 271 84 83 chr11 115719501 115720757 -33062715 + HAL1 LINE L1 200 1456 -1051 1177 262 69 13 chr11 115720820 115721282 -33062190 - L1ME LINE L1 -1603 4937 4450 537 66 0 0 chr11 115721294 115721370 -33062102 - L1PBa LINE L1 -6787 76 1 1030 247 35 61 chr11 115721432 115721893 -33061579 - L1ME LINE L1 -3558 2982 2534 1801 201 55 6 chr11 115721893 115722241 -33061231 - MLT1A1 LTR MaLR 0 365 1 4684 231 59 61 chr11 115722241 115724144 -33059328 - L1MDa LINE L1 -4002 2538 663 332 242 0 0 chr11 115724246 115724337 -33059135 - L1M4 LINE L1 -998 5646 5556 669 180 84 45 chr11 115724357 115724535 -33058937 - LTR34 LTR ERV1 -514 185 1 1115 214 17 13 chr11 115724595 115724829 -33058643 + LTR47B LTR ERVL 204 438 -5 2296 269 49 45 chr11 115724842 115727202 -33056270 - L1M4c LINE L1 -3582 3062 581 251 335 55 18 chr11 115727401 115727556 -33055916 - L1M4c LINE L1 -6301 241 74 285 29 0 0 chr11 115727556 115727590 -33055882 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 251 335 55 18 chr11 115727590 115727652 -33055820 - L1M4c LINE L1 -6468 74 16 230 280 0 0 chr11 115727846 115727896 -33055576 - MER20 DNA MER1_type -169 50 1 404 272 101 32 chr11 115727903 115728061 -33055411 - MIR SINE MIR -65 197 29 22 0 0 0 chr11 115728101 115728123 -33055349 + AT_rich Low_complexity Low_complexity 1 22 0 232 303 51 74 chr11 115728773 115728948 -33054524 + MIR SINE MIR 28 198 -64 2438 48 7 0 chr11 115730090 115730383 -33053089 + AluY SINE Alu 1 295 -16 1686 226 90 25 chr11 115731408 115731590 -33051882 - L1MDa LINE L1 -6063 477 308 183 80 0 0 chr11 115731590 115731615 -33051857 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 1686 226 90 25 chr11 115731615 115731865 -33051607 - L1MDa LINE L1 -6232 308 17 1033 244 164 26 chr11 115731895 115732243 -33051229 + MSTD LTR MaLR 1 396 0 3105 229 66 14 chr11 115732246 115733778 -33049694 + L1ME1 LINE L1 4448 6064 -102 200 121 0 0 chr11 115734644 115734677 -33048795 - L2 LINE L2 -8 3264 3232 1113 118 0 0 chr11 115735051 115735229 -33048243 + (GGGAGA)n Simple_repeat Simple_repeat 3 180 0 2041 150 0 0 chr11 115737040 115737340 -33046132 + AluSx SINE Alu 4 303 -9 1612 169 3 17 chr11 115737658 115737954 -33045518 - AluJo SINE Alu -12 300 9 257 200 20 90 chr11 115738335 115738435 -33045037 + HAL1 LINE L1 1587 1679 -828 1573 209 39 20 chr11 115738852 115739210 -33044262 + MLT1A1 LTR MaLR 1 365 0 2165 102 48 0 chr11 115739621 115739916 -33043556 + AluSg SINE Alu 1 309 -1 1921 112 81 7 chr11 115740022 115740307 -33043165 - AluSx SINE Alu -6 306 1 22 35 0 0 chr11 115740853 115740882 -33042590 + AT_rich Low_complexity Low_complexity 1 29 0 345 24 0 0 chr11 115741060 115741102 -33042370 + (CA)n Simple_repeat Simple_repeat 1 42 0 27 49 0 0 chr11 115741234 115741275 -33042197 + AT_rich Low_complexity Low_complexity 1 41 0 1305 214 52 67 chr11 115741976 115742378 -33041094 + MSTD LTR MaLR 1 396 0 449 250 10 0 chr11 115742520 115742616 -33040856 - L2 LINE L2 -4 3309 3213 733 330 198 14 chr11 115742945 115743287 -33040185 - L2 LINE L2 -534 2780 2502 1294 234 24 40 chr11 115743287 115743667 -33039805 + MLT1A2 LTR MaLR 1 374 0 733 330 198 14 chr11 115743667 115744162 -33039310 - L2 LINE L2 -812 2502 1769 198 103 0 0 chr11 115744162 115744191 -33039281 + (TG)n Simple_repeat Simple_repeat 1 29 0 733 330 198 14 chr11 115744191 115744236 -33039236 - L2 LINE L2 -1545 1769 1734 334 302 67 22 chr11 115744769 115744948 -33038524 + MIR SINE MIR 5 191 -71 434 121 0 0 chr11 115745376 115745442 -33038030 - Charlie5 DNA MER1_type 0 2623 2558 2388 228 48 41 chr11 115745498 115746223 -33037249 - L1MB7 LINE L1 -12 6172 5443 429 170 30 0 chr11 115746223 115746323 -33037149 - Charlie5 DNA MER1_type -84 2528 2426 324 0 0 0 chr11 115746828 115746864 -33036608 + (GA)n Simple_repeat Simple_repeat 2 37 0 927 234 22 108 chr11 115747483 115747889 -33035583 + MLT1A2 LTR MaLR 1 371 -3 207 367 41 10 chr11 115748301 115748399 -33035073 - L2 LINE L2 -3 3269 3169 319 274 110 57 chr11 115748399 115748644 -33034828 + L1ME4a LINE L1 5770 6027 -94 215 345 29 58 chr11 115748774 115748948 -33034524 - L2 LINE L2 -178 3135 2967 2425 92 0 9 chr11 115749214 115749529 -33033943 + AluSx SINE Alu 1 312 0 2444 72 0 0 chr11 115749664 115749969 -33033503 - AluY SINE Alu -4 307 3 228 327 77 10 chr11 115749992 115750096 -33033376 + MLT1J1 LTR MaLR 271 381 -65 22 35 0 0 chr11 115752439 115752468 -33031004 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr11 115752882 115752905 -33030567 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr11 115753680 115753704 -33029768 + AT_rich Low_complexity Low_complexity 1 24 0 284 266 0 44 chr11 115754446 115754559 -33028913 - L1MEd LINE L1 -5003 1116 1009 26 30 0 0 chr11 115754559 115754592 -33028880 + AT_rich Low_complexity Low_complexity 1 33 0 2067 187 28 60 chr11 115754594 115755160 -33028312 - L1MA9 LINE L1 -40 6272 5725 1111 179 14 0 chr11 115755161 115755368 -33028104 - AluJo SINE Alu -2 310 101 3723 183 44 6 chr11 115755368 115756151 -33027321 - L1MA9 LINE L1 -578 5734 4879 273 29 0 0 chr11 115756151 115756185 -33027287 + (TG)n Simple_repeat Simple_repeat 1 34 0 3723 183 44 6 chr11 115756185 115756583 -33026889 - L1MA9 LINE L1 -1433 4879 4497 324 317 92 37 chr11 115756583 115756911 -33026561 - L1MEd LINE L1 -5108 1011 666 22 0 0 0 chr11 115758599 115758621 -33024851 + AT_rich Low_complexity Low_complexity 1 22 0 248 314 9 9 chr11 115758772 115758877 -33024595 + (TA)n Simple_repeat Simple_repeat 1 105 0 257 350 62 0 chr11 115759009 115759089 -33024383 - MIR SINE MIR -160 102 18 996 233 30 17 chr11 115759273 115759573 -33023899 - L1MA4 LINE L1 -9 6291 5988 207 246 31 0 chr11 115759578 115759643 -33023829 + T-rich Low_complexity Low_complexity 2 68 0 223 362 26 33 chr11 115760047 115760199 -33023273 - MIR SINE MIR -108 154 4 445 287 81 37 chr11 115760626 115760833 -33022639 - MIR SINE MIR -30 232 19 312 70 0 0 chr11 115761178 115761221 -33022251 + (ATATG)n Simple_repeat Simple_repeat 3 45 0 279 308 45 71 chr11 115761300 115761498 -33021974 + MLT1K LTR MaLR 396 588 0 480 339 143 37 chr11 115762732 115763278 -33020194 + L2 LINE L2 2253 2856 -458 333 155 0 0 chr11 115763565 115763623 -33019849 + (TA)n Simple_repeat Simple_repeat 1 58 0 472 374 93 15 chr11 115765465 115765797 -33017675 - L3 LINE CR1 -253 1324 967 2679 263 89 19 chr11 115766022 115766867 -33016605 + L1ME2 LINE L1 14 944 -5452 2219 104 3 0 chr11 115766867 115767164 -33016308 - AluSc SINE Alu -11 298 1 2679 263 89 19 chr11 115767164 115767342 -33016130 + L1ME2 LINE L1 944 1108 -5288 355 119 0 13 chr11 115767436 115767506 -33015966 + L1MA8 LINE L1 4714 4779 -1367 4120 163 54 15 chr11 115767910 115768895 -33014577 + L1MA8 LINE L1 5072 6090 -201 1385 267 80 16 chr11 115768907 115769586 -33013886 + L1ME2 LINE L1 2904 3625 -2590 435 313 8 30 chr11 115769690 115769821 -33013651 - L2 LINE L2 -2 3311 3184 4117 241 102 39 chr11 115770049 115770921 -33012551 + L1ME2 LINE L1 3617 4433 -1800 1247 184 141 12 chr11 115770921 115771241 -33012231 + MER46B DNA MER2_type 1 236 0 4117 241 102 39 chr11 115771241 115771545 -33011927 + L1ME2 LINE L1 4433 4716 -1517 1098 231 41 51 chr11 115771545 115771939 -33011533 + MLT1B LTR MaLR 1 390 0 4117 241 102 39 chr11 115771939 115773003 -33010469 + L1ME2 LINE L1 4716 5994 -239 633 213 6 12 chr11 115773169 115773329 -33010143 + L1MA10 LINE L1 6174 6332 -2 550 292 40 45 chr11 115773812 115774014 -33009458 - LTR33 LTR ERVL -320 201 1 222 351 40 46 chr11 115774100 115774251 -33009221 - L3 LINE CR1 -1108 469 320 181 316 71 31 chr11 115774322 115774420 -33009052 - L3 LINE CR1 -1409 168 67 220 296 102 20 chr11 115774466 115774564 -33008908 + MIR3 SINE MIR 96 201 -7 285 299 31 21 chr11 115776097 115776194 -33007278 + MIR SINE MIR 46 143 -119 27 0 0 0 chr11 115776388 115776415 -33007057 + AT_rich Low_complexity Low_complexity 1 27 0 218 316 158 26 chr11 115776702 115776816 -33006656 + MER5A DNA MER1_type 51 179 -10 320 279 102 60 chr11 115777207 115777576 -33005896 - MLT1H LTR MaLR -2 547 1 21 36 0 0 chr11 115777770 115777798 -33005674 + AT_rich Low_complexity Low_complexity 1 28 0 229 224 20 0 chr11 115777810 115777859 -33005613 - L2 LINE L2 0 3272 3223 389 315 28 47 chr11 115778078 115778291 -33005181 + MIR SINE MIR 4 212 -50 263 314 71 53 chr11 115778839 115779122 -33004350 + L2 LINE L2 649 936 -2378 4828 185 53 19 chr11 115779149 115780190 -33003282 - L1MC3 LINE L1 0 7785 6710 305 313 98 47 chr11 115780241 115780497 -33002975 + L2 LINE L2 1271 1539 -1775 404 306 97 72 chr11 115780498 115781077 -33002395 - HAL1 LINE L1 -1898 609 17 195 227 80 40 chr11 115781442 115781517 -33001955 - MIR SINE MIR -61 201 124 208 135 0 27 chr11 115781620 115781657 -33001815 + (TC)n Simple_repeat Simple_repeat 2 37 0 210 135 0 0 chr11 115781902 115781934 -33001538 + (TAA)n Simple_repeat Simple_repeat 1 33 0 528 103 13 0 chr11 115781934 115782012 -33001460 + MADE1 DNA Mariner 1 79 -1 211 132 26 0 chr11 115782082 115782120 -33001352 + (TAGA)n Simple_repeat Simple_repeat 3 41 0 502 238 110 78 chr11 115782154 115782528 -33000944 - MLT1C LTR MaLR 0 390 5 805 237 28 124 chr11 115782715 115783201 -33000271 + LTR27 LTR ERV1 1 1239 -128 23 0 0 0 chr11 115783295 115783318 -33000154 + AT_rich Low_complexity Low_complexity 1 23 0 243 246 0 72 chr11 115783687 115783756 -32999716 + MARNA DNA Mariner 125 188 -398 263 217 198 47 chr11 115785542 115785648 -32997824 - AluJb SINE Alu -173 129 8 180 0 0 0 chr11 115785752 115785772 -32997700 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2077 77 4 4 chr11 115785776 115786050 -32997422 - AluY SINE Alu -37 274 1 960 239 23 107 chr11 115786636 115787151 -32996321 + L1MC5 LINE L1 6748 7219 -742 238 160 47 47 chr11 115787180 115787286 -32996186 + (TTAA)n Simple_repeat Simple_repeat 1 106 0 381 204 51 31 chr11 115787289 115787387 -32996085 + MER94 DNA DNA 34 133 -1 335 250 0 0 chr11 115787594 115787670 -32995802 + L1MC5 LINE L1 7324 7399 -562 215 363 53 9 chr11 115788080 115788193 -32995279 - L2 LINE L2 -223 3049 2932 237 377 13 0 chr11 115789738 115789815 -32993657 - L3 LINE CR1 -70 1507 1430 441 97 27 0 chr11 115789904 115789987 -32993485 - L1P LINE L1 -740 5391 5299 5504 85 4 12 chr11 115789988 115790762 -32992710 + L1PA8 LINE L1 5399 6166 -6 252 0 0 0 chr11 115791097 115791125 -32992347 + (TA)n Simple_repeat Simple_repeat 2 29 0 2120 245 74 98 chr11 115791522 115792826 -32990646 - HAL1 LINE L1 -109 2398 1126 419 312 111 58 chr11 115793626 115794008 -32989464 + L2 LINE L2 2465 2826 -446 859 233 11 0 chr11 115794008 115794184 -32989288 - MER45A DNA AcHobo 0 178 1 419 312 111 58 chr11 115794184 115794556 -32988916 + L2 LINE L2 2826 3260 -12 6606 27 1 8 chr11 115795677 115796462 -32987010 - L1PA3 LINE L1 0 6155 5376 463 322 156 27 chr11 115796719 115797309 -32986163 + L2 LINE L2 2078 2743 -571 537 259 25 25 chr11 115797310 115797468 -32986004 + L1ME1 LINE L1 34 191 -6205 619 276 72 89 chr11 115797504 115797852 -32985620 + L1ME1 LINE L1 348 689 -5707 * 6685 233 85 41 chr11 115797849 115797891 -32985581 + L1ME1 LINE L1 1616 1655 -4580 2267 105 0 3 chr11 115797891 115798197 -32985275 + AluSx SINE Alu 3 307 -5 6685 233 85 41 chr11 115798197 115798853 -32984619 + L1ME1 LINE L1 1655 2280 -3955 1547 181 0 62 chr11 115798853 115799174 -32984298 + AluJo SINE Alu 1 301 -11 6685 233 85 41 chr11 115799174 115800548 -32982924 + L1ME1 LINE L1 2280 3591 -2644 195 42 0 0 chr11 115800548 115800572 -32982900 + (TA)n Simple_repeat Simple_repeat 2 25 0 6685 233 85 41 chr11 115800572 115802326 -32981146 + L1ME1 LINE L1 3591 5617 -618 1761 149 51 118 chr11 115802340 115802791 -32980681 + MSTB1 LTR MaLR 4 424 -8 1146 258 27 45 chr11 115802805 115802964 -32980508 + L1ME1 LINE L1 5706 5866 -369 1117 192 39 13 chr11 115802964 115803193 -32980279 + MER46A DNA MER2_type 1 235 -1 1146 258 27 45 chr11 115803193 115803479 -32979993 + L1ME1 LINE L1 5866 6143 -92 299 215 12 153 chr11 115803425 115803588 -32979884 + L1MA10 LINE L1 6249 6388 -15 * 333 400 49 26 chr11 115803658 115803923 -32979549 + L2 LINE L2 2983 3253 -19 181 347 0 81 chr11 115804592 115804654 -32978818 - L2 LINE L2 -11 3261 3212 1129 199 9 18 chr11 115804654 115804875 -32978597 + MER20 DNA MER1_type 1 219 0 181 347 0 81 chr11 115804875 115804936 -32978536 - L2 LINE L2 -60 3212 3148 1612 230 55 44 chr11 115805220 115805767 -32977705 - L1ME1 LINE L1 -5 6230 5678 283 183 28 14 chr11 115805768 115805839 -32977633 + MER52A LTR ERV1 1 72 -1683 5803 196 93 82 chr11 115806043 115807725 -32975747 + MER52A LTR ERV1 55 1755 0 1393 280 85 7 chr11 115807726 115808604 -32974868 - L1ME1 LINE L1 -556 5679 4730 1984 133 7 3 chr11 115808683 115808985 -32974487 - AluSx SINE Alu -9 303 1 1779 196 6 25 chr11 115809018 115809375 -32974097 - L1M1 LINE L1 -7194 371 22 998 285 70 32 chr11 115809378 115809586 -32973886 - L1ME1 LINE L1 -4772 1624 1426 4991 90 6 35 chr11 115809586 115810295 -32973177 + LTR12 LTR ERV1 1 688 0 998 285 70 32 chr11 115810295 115810781 -32972691 - L1ME1 LINE L1 -4970 1426 903 * 1280 283 35 24 chr11 115810756 115811216 -32972256 - L1ME1 LINE L1 -5892 504 40 1061 305 98 62 chr11 115811663 115812418 -32971054 + L2 LINE L2 1420 2201 -1113 501 316 98 25 chr11 115813207 115813523 -32969949 - L2 LINE L2 -111 3202 2864 1628 175 19 0 chr11 115813530 115813799 -32969673 + MER1B DNA MER1_type 1 274 -65 3870 287 188 15 chr11 115813845 115815658 -32967814 - L2 LINE L2 -460 2854 729 814 217 62 131 chr11 115815730 115815861 -32967611 + MSTD LTR MaLR 6 145 -251 2445 135 54 12 chr11 115815861 115816268 -32967204 + MSTB LTR MaLR 1 424 -2 814 217 62 131 chr11 115816268 115816509 -32966963 + MSTD LTR MaLR 145 352 -44 877 287 253 11 chr11 115816510 115816977 -32966495 + L2 LINE L2 117 696 -2618 1057 139 114 25 chr11 115817164 115817365 -32966107 + MER20 DNA MER1_type 1 219 0 353 245 64 0 chr11 115817881 115817975 -32965497 - L2 LINE L2 0 3313 3214 39 68 0 0 chr11 115818016 115818090 -32965382 + AT_rich Low_complexity Low_complexity 1 74 0 512 285 105 15 chr11 115818212 115818412 -32965060 - MIR SINE MIR -10 252 35 673 347 50 58 chr11 115819725 115820227 -32963245 - L2 LINE L2 -11 3302 2805 253 291 0 31 chr11 115820649 115820776 -32962696 + L1MCa LINE L1 1411 1533 -4893 21 0 0 0 chr11 115820783 115820804 -32962668 + AT_rich Low_complexity Low_complexity 1 21 0 190 228 105 0 chr11 115820804 115820861 -32962611 - MIR SINE MIR -80 182 120 665 323 7 30 chr11 115821049 115821318 -32962154 + L1MCa LINE L1 1751 2014 -4593 2447 103 22 8 chr11 115821318 115821677 -32961795 - THE1B LTR MaLR 0 364 1 665 323 7 30 chr11 115821677 115821704 -32961768 + L1MCa LINE L1 2014 2040 -4567 1035 279 44 61 chr11 115821733 115822395 -32961077 + L2 LINE L2 2558 3210 -103 345 256 44 0 chr11 115822466 115822556 -32960916 - L1ME LINE L1 -613 5549 5456 1614 266 80 11 chr11 115822986 115823527 -32959945 - L1ME3A LINE L1 -11 6954 6377 1621 288 135 37 chr11 115823797 115826843 -32956629 - L1MCc LINE L1 -1639 5302 2022 461 246 83 43 chr11 115826846 115827239 -32956233 - L1MCc LINE L1 -4942 1481 1228 634 154 48 1 chr11 115828565 115828706 -32954766 - L1MA8 LINE L1 -1 6290 6136 198 0 0 0 chr11 115828708 115828730 -32954742 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1957 146 3 3 chr11 115828730 115829053 -32954419 - L1PB1 LINE L1 -9 6142 5820 8594 161 39 3 chr11 115829193 115831451 -32952021 - L1PBa LINE L1 -3288 3574 1094 1957 196 10 5 chr11 115831456 115831848 -32951624 - L1PBa LINE L1 -5818 1045 652 662 198 8 0 chr11 115832013 115832134 -32951338 - MLT1B LTR MaLR -76 314 193 2120 117 0 7 chr11 115832135 115832433 -32951039 - AluSx SINE Alu -16 296 1 1501 187 18 86 chr11 115833069 115833454 -32950018 - MLT1A1 LTR MaLR -6 359 1 240 348 19 58 chr11 115833524 115833679 -32949793 - L2 LINE L2 -188 3084 2936 348 360 35 9 chr11 115833906 115834020 -32949452 + MER91C DNA MER1_type 2 118 -22 2023 200 97 52 chr11 115834075 115834684 -32948788 - MER92B LTR ERV1 0 636 1 1854 172 20 6 chr11 115835005 115835360 -32948112 - MER57A LTR ERV1 -2 401 42 197 225 0 0 chr11 115835366 115835406 -32948066 + MIR SINE MIR 213 252 -10 24 0 0 0 chr11 115836147 115836171 -32947301 + AT_rich Low_complexity Low_complexity 1 24 0 487 242 166 25 chr11 115836450 115836607 -32946865 + MER5A DNA MER1_type 11 189 0 276 335 110 19 chr11 115836607 115836761 -32946711 + MER5B DNA MER1_type 7 174 -4 26 0 0 0 chr11 115837279 115837305 -32946167 + AT_rich Low_complexity Low_complexity 1 26 0 4087 118 28 32 chr11 115837305 115838045 -32945427 - L1MA2 LINE L1 -9 6295 5559 818 226 204 97 chr11 115838045 115838307 -32945165 + LTR28 LTR ERV1 2 235 -1208 2206 109 3 3 chr11 115838307 115838611 -32944861 - AluSq SINE Alu -9 304 1 818 226 204 97 chr11 115838611 115838878 -32944594 + LTR28 LTR ERV1 235 1305 -138 3590 159 11 4 chr11 115838915 115839829 -32943643 - L1M1 LINE L1 -740 5565 4642 2214 97 0 7 chr11 115839966 115840266 -32943206 + AluY SINE Alu 1 298 -13 25 0 0 0 chr11 115840623 115840648 -32942824 + AT_rich Low_complexity Low_complexity 1 25 0 476 256 102 7 chr11 115840701 115840838 -32942634 - MER63A DNA MER1_type -17 193 44 1200 255 85 58 chr11 115841065 115842056 -32941416 - L1ME3 LINE L1 -195 5967 4876 414 39 0 0 chr11 115842056 115842108 -32941364 + (CA)n Simple_repeat Simple_repeat 1 52 0 1200 255 85 58 chr11 115842108 115842540 -32940932 - L1ME3 LINE L1 -1286 4876 4457 613 303 39 27 chr11 115842535 115842868 -32940604 - L1ME3 LINE L1 -2367 3779 3443 * 1305 268 55 19 chr11 115842970 115843608 -32939864 - L1ME3 LINE L1 -2979 3167 2507 1943 156 0 0 chr11 115845190 115845485 -32937987 - AluSx SINE Alu -17 295 1 523 313 60 12 chr11 115845934 115846183 -32937289 + L2 LINE L2 2469 2729 -585 1703 137 50 0 chr11 115846200 115846462 -32937010 + AluSx SINE Alu 19 293 -19 180 0 0 0 chr11 115846469 115846489 -32936983 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 238 311 16 0 chr11 115846556 115846617 -32936855 + L2 LINE L2 3157 3218 -54 205 182 0 0 chr11 115847153 115847186 -32936286 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 22 35 0 0 chr11 115848251 115848280 -32935192 + AT_rich Low_complexity Low_complexity 1 29 0 1993 180 173 70 chr11 115848995 115849707 -32933765 - LTR48 LTR ERV1 0 787 3 2044 129 39 36 chr11 115849938 115850301 -32933171 + THE1B LTR MaLR 1 364 0 346 238 143 0 chr11 115850486 115850570 -32932902 - L2 LINE L2 -23 3249 3154 201 39 0 0 chr11 115850583 115850609 -32932863 + (TC)n Simple_repeat Simple_repeat 2 27 0 226 155 43 43 chr11 115850609 115850725 -32932747 + (TA)n Simple_repeat Simple_repeat 2 117 0 230 283 31 88 chr11 115851121 115851257 -32932215 - L1MC4 LINE L1 -1 8041 7922 2557 132 80 0 chr11 115851257 115851680 -32931792 - MSTB2 LTR MaLR 0 457 1 230 283 31 88 chr11 115851680 115851769 -32931703 - L1MC4 LINE L1 -120 7922 7829 397 208 131 0 chr11 115851840 115851970 -32931502 - L1M4 LINE L1 -1609 4537 4391 4970 229 32 37 chr11 115851974 115852703 -32930769 + L1ME3A LINE L1 4020 4751 -1423 3553 138 68 10 chr11 115852703 115853320 -32930152 - MER39B LTR ERV1 0 653 1 4970 229 32 37 chr11 115853320 115854104 -32929368 + L1ME3A LINE L1 4751 5522 -652 532 229 220 81 chr11 115854143 115854379 -32929093 - MER57B LTR ERV1 -131 271 3 306 221 28 212 chr11 115855315 115855532 -32927940 + MER5B DNA MER1_type 1 177 -1 631 211 0 16 chr11 115855537 115855665 -32927807 + MER5B DNA MER1_type 53 178 0 797 185 82 0 chr11 115855667 115855813 -32927659 - MER5A DNA MER1_type -14 175 18 831 259 45 85 chr11 115855822 115856108 -32927364 + L1ME3A LINE L1 5562 5827 -343 2169 124 0 0 chr11 115856108 115856414 -32927058 - AluSx SINE Alu -6 306 1 831 259 45 85 chr11 115856414 115856551 -32926921 + L1ME3A LINE L1 5827 5968 -202 300 287 52 9 chr11 115857016 115857131 -32926341 - MER94 DNA DNA -3 131 12 216 0 0 0 chr11 115858226 115858250 -32925222 + (T)n Simple_repeat Simple_repeat 1 24 0 24 0 0 0 chr11 115858271 115858295 -32925177 + GC_rich Low_complexity Low_complexity 1 24 0 231 114 0 0 chr11 115858472 115858507 -32924965 + (A)n Simple_repeat Simple_repeat 1 35 0 186 333 17 17 chr11 115859146 115859206 -32924266 + MIR SINE MIR 16 75 -187 32 43 0 0 chr11 115859375 115859421 -32924051 + AT_rich Low_complexity Low_complexity 1 46 0 28 0 0 0 chr11 115859536 115859564 -32923908 + AT_rich Low_complexity Low_complexity 1 28 0 218 333 61 0 chr11 115859708 115859774 -32923698 + MIR SINE MIR 30 99 -163 217 241 133 96 chr11 115859800 115859966 -32923506 - MIR SINE MIR -44 218 47 218 278 19 0 chr11 115861328 115861382 -32922090 + CT-rich Low_complexity Low_complexity 4 58 0 261 177 38 13 chr11 115861490 115861569 -32921903 + CT-rich Low_complexity Low_complexity 3 83 0 1769 166 96 20 chr11 115862691 115863089 -32920383 - MSTA LTR MaLR 0 428 1 1849 278 68 13 chr11 115863656 115864336 -32919136 - HsTC2c DNA Tc2 -7 722 6 776 246 59 5 chr11 115864735 115864880 -32918592 - MER58C DNA MER1_type -2206 214 53 2287 104 48 20 chr11 115864880 115865234 -32918238 + THE1B LTR MaLR 1 364 0 776 246 59 5 chr11 115865234 115865291 -32918181 - MER58C DNA MER1_type -2367 53 1 847 218 50 0 chr11 115865300 115865479 -32917993 - MER5A DNA MER1_type -1 188 1 497 317 62 25 chr11 115865482 115865722 -32917750 + MIR SINE MIR 12 260 -2 181 311 107 57 chr11 115866564 115866686 -32916786 + MIR SINE MIR 11 138 -124 * 274 252 154 16 chr11 115866673 115866796 -32916676 + L2 LINE L2 2615 2754 -560 234 263 297 17 chr11 115866864 115866982 -32916490 + MER5A DNA MER1_type 39 189 0 229 268 248 26 chr11 115866982 115867130 -32916342 + L2 LINE L2 2793 2974 -340 517 296 11 34 chr11 115867196 115867375 -32916097 + L2 LINE L2 3135 3309 -4 335 303 65 26 chr11 115868103 115868258 -32915214 + MIR SINE MIR 12 172 -90 2143 104 0 0 chr11 115868450 115868737 -32914735 - AluSg SINE Alu -23 287 1 21 0 0 0 chr11 115869376 115869397 -32914075 + AT_rich Low_complexity Low_complexity 1 21 0 269 242 175 50 chr11 115869613 115869733 -32913739 - MIR3 SINE MIR -51 157 23 1817 209 129 9 chr11 115869944 115870393 -32913079 - MLT1D LTR MaLR -2 503 1 734 243 30 0 chr11 115871034 115871203 -32912269 + MER5A DNA MER1_type 1 189 0 2811 216 74 21 chr11 115871946 115872435 -32911037 - L1ME2 LINE L1 -10 6154 5592 2770 60 139 12 chr11 115872435 115872866 -32910606 - LTR19A LTR ERV1 0 486 1 2811 216 74 21 chr11 115872866 115873249 -32910223 - L1ME2 LINE L1 -572 5592 5231 334 273 107 27 chr11 115873714 115873864 -32909608 - MIR3 SINE MIR -37 171 10 303 336 60 0 chr11 115874992 115875108 -32908364 - L2 LINE L2 -4 3309 3187 * 554 245 135 31 chr11 115875107 115875299 -32908173 - MIR SINE MIR -1 261 50 * 1222 255 133 34 chr11 115875296 115875762 -32907710 + L2 LINE L2 2149 2660 -654 979 324 69 30 chr11 115875815 115876247 -32907225 + L2 LINE L2 2854 3302 -11 520 354 48 13 chr11 115876284 115876595 -32906877 - L2 LINE L2 -340 2974 2653 900 249 63 44 chr11 115876607 115876972 -32906500 + L1ME3A LINE L1 5537 5908 -262 704 267 89 56 chr11 115876972 115877462 -32906010 + MLT1H LTR MaLR 1 595 0 294 239 0 0 chr11 115877509 115877576 -32905896 + MLT1H-int LTR MaLR 26 92 -1643 279 359 0 7 chr11 115877618 115877760 -32905712 + MLT1H-int LTR MaLR 332 472 -899 260 161 97 32 chr11 115878810 115878872 -32904600 + MLT1F LTR MaLR 3 68 -474 425 297 61 46 chr11 115878872 115879199 -32904273 - HAL1 LINE L1 -1434 1073 742 612 338 53 53 chr11 115879203 115879596 -32903876 + L2 LINE L2 2919 3311 -2 460 278 29 17 chr11 115879859 115880014 -32903458 + MIR SINE MIR 4 156 -62 705 240 50 28 chr11 115880261 115880440 -32903032 + MER58A DNA MER1_type 42 224 0 1089 197 24 5 chr11 115880646 115880854 -32902618 + MER20 DNA MER1_type 1 212 -7 3066 74 15 7 chr11 115881803 115882209 -32901263 + MLT2A2 LTR ERVL 1 409 -44 216 158 0 0 chr11 115882224 115882262 -32901210 + (TG)n Simple_repeat Simple_repeat 2 39 0 597 180 35 0 chr11 115882400 115882572 -32900900 + (TATATG)n Simple_repeat Simple_repeat 2 179 0 351 91 36 0 chr11 115882582 115882637 -32900835 + MLT2A2 LTR ERVL 464 520 0 254 150 100 0 chr11 115882723 115882783 -32900689 - MLT2B1 LTR ERVL 0 520 455 1671 209 8 74 chr11 115882796 115883294 -32900178 + MER57A-int LTR ERV1 365 829 -6708 268 146 0 0 chr11 115883496 115883537 -32899935 + MER57A-int LTR ERV1 948 988 -4135 795 251 68 30 chr11 115883537 115883800 -32899672 + MER34C LTR ERV1 155 427 -158 419 193 23 72 chr11 115883803 115884040 -32899432 + MER57A-int LTR ERV1 1095 2689 -3678 * 754 178 16 91 chr11 115884020 115884246 -32899226 + MER57A-int LTR ERV1 1357 3271 -3060 393 181 0 0 chr11 115884299 115884371 -32899101 + MER57A-int LTR ERV1 3264 3335 -2996 259 203 43 0 chr11 115884635 115884704 -32898768 + MER57A-int LTR ERV1 2808 2879 -3879 5055 200 56 66 chr11 115884928 115886533 -32896939 + MER57A-int LTR ERV1 3698 5821 -1587 6194 200 44 10 chr11 115886863 115888140 -32895332 + MER57A-int LTR ERV1 5825 7144 -393 534 138 106 32 chr11 115888140 115888263 -32895209 + LTR54B LTR ERV1 1 132 -366 458 189 112 7 chr11 115888315 115888458 -32895014 + LTR54B LTR ERV1 226 383 -115 477 130 10 70 chr11 115888504 115888604 -32894868 + MER57A-int LTR ERV1 7444 7537 0 1918 158 103 5 chr11 115888604 115888971 -32894501 + MER57A LTR ERV1 1 403 0 371 295 177 25 chr11 115889089 115889326 -32894146 + L1 LINE L1 3549 3821 -2325 722 228 30 8 chr11 115889535 115889763 -32893709 + L1 LINE L1 3386 3614 -2532 263 265 24 0 chr11 115889764 115889847 -32893625 + L1 LINE L1 4855 4939 -1207 547 202 161 22 chr11 115889853 115890076 -32893396 + L1M4 LINE L1 1212 1465 -5077 1170 158 11 42 chr11 115891970 115892019 -32891453 - L1MA6 LINE L1 0 6300 6251 2034 138 41 36 chr11 115892019 115892381 -32891091 - THE1B LTR MaLR 0 364 1 11114 91 33 5 chr11 115892381 115893917 -32889555 - THE1B-int LTR MaLR 0 1580 1 1946 162 36 22 chr11 115893917 115894276 -32889196 - THE1B LTR MaLR 0 364 1 1170 158 11 42 chr11 115894276 115894484 -32888988 - L1MA6 LINE L1 -46 6254 6049 4232 241 75 9 chr11 115894502 115896014 -32887458 - L1M1 LINE L1 -4150 3059 1734 1559 325 27 40 chr11 115896258 115896782 -32886690 - L1M1 LINE L1 -6479 730 216 1987 119 61 25 chr11 115896782 115897142 -32886330 + THE1C LTR MaLR 3 375 0 1559 325 27 40 chr11 115897142 115897313 -32886159 - L1M1 LINE L1 -6993 216 44 531 221 40 12 chr11 115897298 115897490 -32885982 - L1ME LINE L1 -646 5518 5315 * 1093 272 73 38 chr11 115897538 115898194 -32885278 - L1ME3A LINE L1 -219 6020 5335 14880 148 39 21 chr11 115898194 115900841 -32882631 - Tigger4(Zombi) DNA MER2_type -7 2724 32 486 319 92 9 chr11 115900855 115901172 -32882300 - L1ME3A LINE L1 -874 5341 4999 251 254 0 0 chr11 115901216 115901279 -32882193 + L1M4 LINE L1 2877 2939 -3207 429 276 96 20 chr11 115901349 115901548 -32881924 - L1ME3A LINE L1 -3444 2771 2558 240 86 0 0 chr11 115901580 115901615 -32881857 + (CCTA)n Simple_repeat Simple_repeat 4 38 0 306 250 0 0 chr11 115901615 115901675 -32881797 - MER2 DNA MER2_type -1 344 285 356 270 99 20 chr11 115901927 115902179 -32881293 - L1ME3A LINE L1 -3699 2516 2245 391 288 70 39 chr11 115902228 115902457 -32881015 - L1ME3A LINE L1 -4137 2259 2024 381 299 43 30 chr11 115902720 115902951 -32880521 - L1ME3A LINE L1 -4640 1756 1523 960 305 62 48 chr11 115903098 115903943 -32879529 - L1ME3A LINE L1 -4918 1287 432 315 104 0 0 chr11 115904132 115904180 -32879292 + (CA)n Simple_repeat Simple_repeat 2 49 0 1429 210 99 3 chr11 115904226 115904550 -32878922 + MLT1A1 LTR MaLR 10 364 -1 381 306 177 38 chr11 115905101 115905385 -32878087 - L1MDa LINE L1 -753 1737 1312 356 331 29 0 chr11 115905475 115905611 -32877861 - L1MDa LINE L1 -5393 726 587 247 248 29 102 chr11 115905669 115905806 -32877666 - L1MDa LINE L1 -5634 485 359 262 271 75 60 chr11 115906286 115906419 -32877053 + L2 LINE L2 3179 3313 0 408 222 0 49 chr11 115906959 115907103 -32876369 + (TGGG)n Simple_repeat Simple_repeat 2 138 0 5137 161 66 12 chr11 115909366 115910715 -32872757 - L1MA5 LINE L1 0 6300 4887 4184 158 57 21 chr11 115911553 115912279 -32871193 + L1PB4 LINE L1 4804 5502 -654 1824 151 102 6 chr11 115912279 115912611 -32870861 + THE1B LTR MaLR 1 364 0 4184 158 57 21 chr11 115912611 115912838 -32870634 + L1PB4 LINE L1 5502 5719 -437 540 111 0 0 chr11 115912838 115912919 -32870553 + (TA)n Simple_repeat Simple_repeat 2 82 0 4184 158 57 21 chr11 115912919 115913209 -32870263 + L1PB4 LINE L1 5719 6086 -70 1638 106 0 0 chr11 115913209 115913426 -32870046 + AluSx SINE Alu 1 217 -95 409 136 0 0 chr11 115913515 115913574 -32869898 + AluSp/q SINE Alu 228 286 -27 231 102 51 17 chr11 115913577 115913603 -32869869 + (TAAA)n Simple_repeat Simple_repeat 1 25 -36 418 128 13 0 chr11 115913603 115913681 -32869791 + L1PB4 LINE L1 6076 6154 -2 231 102 51 17 chr11 115913681 115913713 -32869759 + (TAAA)n Simple_repeat Simple_repeat 25 61 0 219 321 62 36 chr11 115913921 115914033 -32869439 - L3 LINE CR1 -465 1112 998 587 247 53 29 chr11 115914486 115914532 -32868940 + MLT1J1 LTR MaLR 1 44 -402 1589 187 86 36 chr11 115914532 115914976 -32868496 + MER31B LTR ERV1 1 466 0 587 247 53 29 chr11 115914976 115915099 -32868373 + MLT1J1 LTR MaLR 44 174 -272 243 0 0 0 chr11 115915101 115915128 -32868344 + (T)n Simple_repeat Simple_repeat 1 27 0 189 0 0 0 chr11 115915154 115915175 -32868297 + (G)n Simple_repeat Simple_repeat 1 21 0 268 147 0 29 chr11 115916245 115916313 -32867159 + (GGAA)n Simple_repeat Simple_repeat 4 69 0 533 327 19 0 chr11 115921423 115921582 -32861890 + MER5B DNA MER1_type 1 162 -16 237 217 0 0 chr11 115921899 115921945 -32861527 + GA-rich Low_complexity Low_complexity 3 48 0 5118 166 16 54 chr11 115928583 115928832 -32854640 + L1PA13 LINE L1 5232 5489 -677 1699 114 9 44 chr11 115928832 115929147 -32854325 + AluSg SINE Alu 1 304 -6 5118 166 16 54 chr11 115929147 115929864 -32853608 + L1PA13 LINE L1 5489 6159 -7 1166 274 143 43 chr11 115932330 115932534 -32850938 - HAL1 LINE L1 -821 1686 1504 222 37 0 0 chr11 115932534 115932561 -32850911 + (CAT)n Simple_repeat Simple_repeat 2 28 0 1166 274 143 43 chr11 115932561 115933401 -32850071 - HAL1 LINE L1 -1003 1504 538 356 273 91 9 chr11 115933476 115933586 -32849886 + MLT1J LTR MaLR 14 132 -379 246 264 18 82 chr11 115933549 115933659 -32849813 + MLT2E LTR ERVL 33 135 -493 * 24 0 0 0 chr11 115935633 115935657 -32847815 + AT_rich Low_complexity Low_complexity 1 24 0 267 330 25 17 chr11 115936073 115936191 -32847281 + MIR3 SINE MIR 73 191 -17 28 29 0 0 chr11 115936579 115936614 -32846858 + AT_rich Low_complexity Low_complexity 1 35 0 1657 190 7 13 chr11 115937266 115937566 -32845906 - AluJb SINE Alu -12 300 3 1012 154 14 136 chr11 115937590 115937876 -32845596 - L1MD3 LINE L1 0 7995 7745 210 297 108 36 chr11 115937880 115937991 -32845481 - MIR3 SINE MIR -40 168 50 2144 48 0 7 chr11 115938920 115939190 -32844282 - AluY SINE Alu -4 307 40 1873 159 23 3 chr11 115940717 115941068 -32842404 + L1MA5 LINE L1 5938 6295 -5 477 321 38 16 chr11 115941143 115941327 -32842145 + MIR SINE MIR 19 206 -56 1457 220 29 75 chr11 115941942 115942019 -32841453 + MLT1D LTR MaLR 5 84 -421 3232 107 7 0 chr11 115942019 115942469 -32841003 + MLT2A2 LTR ERVL 1 453 0 1457 220 29 75 chr11 115942469 115942868 -32840604 + MLT1D LTR MaLR 84 459 -46 455 301 131 10 chr11 115943412 115943618 -32839854 - MIR SINE MIR -19 243 13 24 0 0 0 chr11 115943984 115944008 -32839464 + AT_rich Low_complexity Low_complexity 1 24 0 300 277 13 63 chr11 115944241 115944400 -32839072 + L1ME2 LINE L1 5684 5834 -336 301 267 33 50 chr11 115944558 115944678 -32838794 + L1ME2 LINE L1 5843 5960 -204 2135 106 3 0 chr11 115944725 115945028 -32838444 + AluY SINE Alu 1 304 -7 23 54 0 0 chr11 115945205 115945242 -32838230 + AT_rich Low_complexity Low_complexity 1 37 0 394 257 7 138 chr11 115946755 115946907 -32836565 - L2 LINE L2 0 3272 3141 1037 192 19 10 chr11 115947025 115947233 -32836239 + MER46A DNA MER2_type 18 227 -9 27 62 0 0 chr11 115947233 115947281 -32836191 + AT_rich Low_complexity Low_complexity 1 48 0 28 0 0 0 chr11 115947896 115947924 -32835548 + AT_rich Low_complexity Low_complexity 1 28 0 210 252 168 56 chr11 115947924 115948031 -32835441 + L2 LINE L2 3154 3272 0 27 0 0 0 chr11 115948214 115948241 -32835231 + AT_rich Low_complexity Low_complexity 1 27 0 502 98 53 8 chr11 115948291 115948423 -32835049 + (TA)n Simple_repeat Simple_repeat 1 138 0 223 329 0 59 chr11 115948423 115948508 -32834964 + L2 LINE L2 3230 3309 -4 335 250 163 52 chr11 115949027 115949315 -32834157 + L1M4 LINE L1 4628 4947 -1199 5301 260 54 15 chr11 115949616 115951314 -32832158 - L1MEc LINE L1 -4596 1800 37 2570 62 0 0 chr11 115951489 115951798 -32831674 - AluY SINE Alu -2 309 1 21 36 0 0 chr11 115952116 115952144 -32831328 + AT_rich Low_complexity Low_complexity 1 28 0 791 228 89 5 chr11 115952656 115952858 -32830614 + MER20 DNA MER1_type 1 219 0 320 313 139 7 chr11 115953283 115953427 -32830045 - MIR3 SINE MIR -16 192 30 210 307 57 68 chr11 115954054 115954230 -32829242 - L2 LINE L2 -336 2977 2804 593 174 25 8 chr11 115954232 115954353 -32829119 - MER20 DNA MER1_type 0 219 97 270 311 22 11 chr11 115954467 115954557 -32828915 + MLT1K LTR MaLR 54 144 -444 1472 67 0 0 chr11 115954603 115954783 -32828689 + AluY SINE Alu 127 306 -5 438 282 128 54 chr11 115954929 115955161 -32828311 + MLT1K LTR MaLR 359 580 -8 210 182 195 52 chr11 115955169 115955246 -32828226 + MIR SINE MIR 77 164 -98 26 0 0 0 chr11 115956268 115956294 -32827178 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr11 115956499 115956522 -32826950 + AT_rich Low_complexity Low_complexity 1 23 0 627 263 39 6 chr11 115957650 115957806 -32825666 - MER5B DNA MER1_type -14 164 4 25 31 0 0 chr11 115958234 115958266 -32825206 + AT_rich Low_complexity Low_complexity 1 32 0 1309 178 73 3 chr11 115958716 115959003 -32824469 + L1MC3 LINE L1 7479 7785 0 2180 104 14 0 chr11 115959049 115959346 -32824126 - AluSx SINE Alu -11 301 1 229 291 25 25 chr11 115959967 115960046 -32823426 + L2 LINE L2 3235 3313 0 297 0 0 0 chr11 115960772 115960805 -32822667 + (TG)n Simple_repeat Simple_repeat 2 34 0 316 327 71 86 chr11 115961178 115961514 -32821958 + L2 LINE L2 2920 3250 -22 2092 123 7 3 chr11 115961528 115961828 -32821644 + AluSq SINE Alu 1 301 -12 225 308 41 68 chr11 115962591 115962737 -32820735 + MIR SINE MIR 8 149 -113 242 273 0 0 chr11 115962792 115962858 -32820614 - MIR SINE MIR -14 248 183 27 29 0 0 chr11 115963237 115963271 -32820201 + AT_rich Low_complexity Low_complexity 1 34 0 186 318 15 15 chr11 115963751 115963817 -32819655 + L2 LINE L2 3218 3283 -30 2126 128 0 3 chr11 115963823 115964128 -32819344 + AluSq SINE Alu 1 304 -9 380 370 37 45 chr11 115965407 115965977 -32817495 + L2 LINE L2 2497 3057 -215 186 349 45 0 chr11 115966431 115966497 -32816975 + L2 LINE L2 3122 3190 -82 462 327 13 7 chr11 115966683 115966833 -32816639 - L2 LINE L2 0 3313 3163 22 0 0 0 chr11 115967529 115967551 -32815921 + AT_rich Low_complexity Low_complexity 1 22 0 357 0 37 19 chr11 115967750 115967804 -32815668 + (TA)n Simple_repeat Simple_repeat 1 55 0 5922 129 23 10 chr11 115967817 115968940 -32814532 - L1PA15 LINE L1 -21 6144 4999 * 5991 162 30 12 chr11 115968937 115970072 -32813400 + L1PA15 LINE L1 3850 5004 -1142 360 200 50 0 chr11 115970943 115971023 -32812449 - MER112 DNA MER1_type -176 84 1 979 216 102 6 chr11 115972135 115972459 -32811013 - HsTC2 DNA Tc2 -2 1896 1542 274 281 52 10 chr11 115972472 115972568 -32810904 - HsTC2 DNA Tc2 -597 1301 1202 21 0 0 0 chr11 115972665 115972686 -32810786 + AT_rich Low_complexity Low_complexity 1 21 0 6196 150 16 6 chr11 115972686 115974497 -32808975 - L1MA3 LINE L1 0 6305 4475 296 375 10 35 chr11 115974579 115974779 -32808693 - HERV16 LTR ERVL -3550 1446 1252 287 157 0 71 chr11 115974863 115974933 -32808539 - LTR33 LTR ERVL -2 519 455 8750 77 11 1 chr11 115975087 115977062 -32806410 - L1PA7 LINE L1 0 6154 4167 337 264 264 0 chr11 115977119 115977286 -32806186 - MIR SINE MIR -1 261 51 2090 112 3 13 chr11 115977688 115977993 -32805479 - AluSx SINE Alu -10 302 1 369 0 0 0 chr11 115978339 115978380 -32805092 + (TATG)n Simple_repeat Simple_repeat 2 42 0 2056 114 11 0 chr11 115978383 115978663 -32804809 - AluSp SINE Alu -30 283 1 1079 185 60 41 chr11 115978746 115979060 -32804412 - MER33 DNA MER1_type 0 324 5 4482 90 35 2 chr11 115979880 115980512 -32802960 - L1PA11 LINE L1 0 6174 5522 269 319 117 48 chr11 115980721 115980969 -32802503 + L2 LINE L2 2435 2699 -615 211 235 29 15 chr11 115981353 115981421 -32802051 + L2 LINE L2 3151 3219 -94 181 217 17 50 chr11 115981498 115981558 -32801914 + L2 LINE L2 3255 3312 -1 1753 62 5 0 chr11 115981935 115982143 -32801329 - AluY SINE Alu -10 301 93 512 324 55 17 chr11 115983863 115984101 -32799371 + MIR SINE MIR 2 248 -14 2403 73 0 3 chr11 115984675 115984978 -32798494 - AluY SINE Alu -9 302 1 287 233 38 98 chr11 115986496 115986629 -32796843 - MER112 DNA MER1_type -50 210 86 1859 184 33 6 chr11 115986649 115986985 -32796487 + MER7A DNA MER2_type 1 343 -3 402 223 82 38 chr11 115987348 115987532 -32795940 + LTR16C LTR ERVL 273 464 -27 2073 202 31 73 chr11 115987593 115988171 -32795301 - MLT2B3 LTR ERVL 0 554 1 207 0 0 0 chr11 115989326 115989349 -32794123 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 23 0 0 0 chr11 115989354 115989377 -32794095 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr11 115989424 115989446 -32794026 + AT_rich Low_complexity Low_complexity 1 22 0 35295 97 11 30 chr11 115990064 115996323 -32787149 - L1PA6 LINE L1 -9 6145 12 853 62 8 46 chr11 115996737 115996867 -32786605 + L1PA16 LINE L1 6042 6166 0 1618 175 72 88 chr11 115997139 115997342 -32786130 + MLT1C LTR MaLR 1 206 -261 2093 128 0 3 chr11 115997342 115997646 -32785826 + AluSq SINE Alu 1 303 -10 1618 175 72 88 chr11 115997646 115997917 -32785555 + MLT1C LTR MaLR 206 467 0 486 302 26 48 chr11 116002047 116002236 -32781236 + MIR SINE MIR 2 186 -76 210 278 0 0 chr11 116002284 116002338 -32781134 + (TA)n Simple_repeat Simple_repeat 2 55 0 367 355 28 47 chr11 116002526 116002737 -32780735 + MIR SINE MIR 40 246 -16 187 312 97 26 chr11 116002748 116002902 -32780570 + MIR SINE MIR 81 245 -17 336 360 32 24 chr11 116003121 116003246 -32780226 + L2 LINE L2 3147 3272 0 22 0 0 0 chr11 116005575 116005597 -32777875 + AT_rich Low_complexity Low_complexity 1 22 0 502 206 0 47 chr11 116005858 116005965 -32777507 - FLAM_A SINE Alu -28 114 13 21 36 0 0 chr11 116006002 116006030 -32777442 + AT_rich Low_complexity Low_complexity 1 28 0 249 317 40 20 chr11 116006234 116006335 -32777137 + MIR SINE MIR 104 206 -56 21 36 0 0 chr11 116006781 116006809 -32776663 + AT_rich Low_complexity Low_complexity 1 28 0 384 326 102 32 chr11 116006847 116007190 -32776282 + L1MEd LINE L1 712 1078 -5041 21 57 0 0 chr11 116007215 116007250 -32776222 + AT_rich Low_complexity Low_complexity 1 35 0 396 279 45 30 chr11 116007649 116007850 -32775622 - MER2 DNA MER2_type 0 345 142 1146 209 22 33 chr11 116007857 116008130 -32775342 + MER2 DNA MER2_type 76 345 0 23 0 0 0 chr11 116008270 116008293 -32775179 + AT_rich Low_complexity Low_complexity 1 23 0 1148 176 0 15 chr11 116008650 116008855 -32774617 + AluJb SINE Alu 85 286 -26 946 134 0 0 chr11 116008906 116009055 -32774417 + L1PA13 LINE L1 6004 6152 -11 436 295 88 59 chr11 116009381 116009720 -32773752 + HAL1 LINE L1 1250 1598 -909 192 111 0 0 chr11 116009778 116009814 -32773658 + (A)n Simple_repeat Simple_repeat 1 36 0 267 316 11 0 chr11 116009914 116010009 -32773463 + (CATATA)n Simple_repeat Simple_repeat 6 101 0 2296 70 7 3 chr11 116010084 116010392 -32773080 + AluSp SINE Alu 1 309 0 22 56 0 0 chr11 116010592 116010628 -32772844 + AT_rich Low_complexity Low_complexity 1 36 0 312 270 141 84 chr11 116010815 116011121 -32772351 + L1MEd LINE L1 2122 2409 -3720 975 146 6 6 chr11 116011121 116011292 -32772180 + L1MB8 LINE L1 6003 6173 -5 312 270 141 84 chr11 116011292 116011338 -32772134 + L1MEd LINE L1 2409 2451 -3678 2220 113 3 3 chr11 116011338 116011648 -32771824 + AluSg SINE Alu 1 310 0 312 270 141 84 chr11 116011648 116011698 -32771774 + L1MEd LINE L1 2451 2548 -3581 391 284 144 68 chr11 116011713 116012357 -32771115 + L1MEd LINE L1 2447 3139 -2990 703 302 95 2 chr11 116012660 116013124 -32770348 + L1MEd LINE L1 3678 4184 -1945 317 269 96 13 chr11 116013186 116013342 -32770130 + L1MEd LINE L1 4860 5028 -1101 27 49 0 0 chr11 116013445 116013486 -32769986 + AT_rich Low_complexity Low_complexity 1 41 0 180 300 141 59 chr11 116013614 116013834 -32769638 + L2 LINE L2 2716 2953 -361 200 361 82 25 chr11 116014082 116014240 -32769232 - L2 LINE L2 -229 3043 2877 25690 135 18 16 chr11 116015169 116017055 -32766417 - L1PA8A LINE L1 -4 6442 4561 1923 133 39 0 chr11 116017055 116017341 -32766131 - AluSx SINE Alu -15 297 1 25690 135 18 16 chr11 116017341 116019378 -32764094 - L1PA8A LINE L1 -1885 4561 2529 2260 98 24 0 chr11 116019378 116019673 -32763799 - AluSp SINE Alu -11 302 1 25690 135 18 16 chr11 116019673 116020870 -32762602 - L1PA8A LINE L1 -3917 2529 1336 225 65 0 0 chr11 116020870 116020901 -32762571 + (TTG)n Simple_repeat Simple_repeat 3 33 0 25690 135 18 16 chr11 116020901 116022143 -32761329 - L1PA8A LINE L1 -5110 1336 2 288 0 0 0 chr11 116022257 116022289 -32761183 + (T)n Simple_repeat Simple_repeat 1 32 0 183 80 0 0 chr11 116022432 116022457 -32761015 + (A)n Simple_repeat Simple_repeat 1 25 0 511 255 94 7 chr11 116022488 116022637 -32760835 + MIR SINE MIR 44 205 -57 495 311 55 34 chr11 116023827 116024062 -32759410 + MIR SINE MIR 22 261 -1 439 184 75 164 chr11 116024926 116025127 -32758345 - MIR SINE MIR 0 262 80 643 324 70 11 chr11 116025551 116025823 -32757649 - L2 LINE L2 -217 3096 2809 1005 191 11 5 chr11 116025876 116026064 -32757408 + MER5A DNA MER1_type 1 189 0 181 312 312 6 chr11 116026064 116026209 -32757263 - L2 LINE L2 -569 2745 2553 215 219 0 0 chr11 116026270 116026311 -32757161 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 202 288 113 0 chr11 116027648 116027728 -32755744 - MIR SINE MIR -1 261 173 200 213 32 53 chr11 116028386 116028480 -32754992 - MIR SINE MIR -43 219 128 21 36 0 0 chr11 116029114 116029142 -32754330 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr11 116029604 116029646 -32753826 + AT_rich Low_complexity Low_complexity 1 42 0 2034 136 0 7 chr11 116030346 116030648 -32752824 + AluSx SINE Alu 1 300 -12 192 77 0 103 chr11 116031329 116031368 -32752104 + L2 LINE L2 691 725 -2589 208 224 104 15 chr11 116031984 116032051 -32751421 - L2 LINE L2 -10 3262 3190 355 319 42 8 chr11 116032206 116032325 -32751147 + MIR SINE MIR 15 137 -125 499 71 0 0 chr11 116032359 116032429 -32751043 - L1PA7 LINE L1 -3 6151 6082 216 263 18 35 chr11 116032522 116032579 -32750893 - L2 LINE L2 -83 3189 3134 356 305 61 15 chr11 116033629 116033760 -32749712 - MIR SINE MIR -114 148 12 1814 139 13 40 chr11 116033974 116034276 -32749196 - AluSx SINE Alu -18 294 1 448 245 9 19 chr11 116034368 116034474 -32748998 - MER5B DNA MER1_type 0 178 74 789 272 35 38 chr11 116034830 116035091 -32748381 - MIR SINE MIR -1 261 2 189 0 0 0 chr11 116035304 116035325 -32748147 + (T)n Simple_repeat Simple_repeat 1 21 0 2447 59 0 0 chr11 116035470 116035759 -32747713 - AluY SINE Alu -22 289 1 855 291 19 31 chr11 116040835 116041096 -32742376 + MIR SINE MIR 5 262 0 331 329 21 49 chr11 116041150 116041293 -32742179 - MIR SINE MIR -122 140 2 747 171 53 32 chr11 116042014 116042201 -32741271 - L1MC3 LINE L1 -1877 5908 5718 1595 176 69 0 chr11 116042558 116042904 -32740568 - L1MC3 LINE L1 0 7785 7416 6582 181 44 16 chr11 116042984 116043688 -32739784 - L1MC3 LINE L1 -913 6872 6189 225 0 0 0 chr11 116043688 116043713 -32739759 + (CA)n Simple_repeat Simple_repeat 2 26 0 6582 181 44 16 chr11 116043713 116044391 -32739081 - L1MC3 LINE L1 -1596 6189 5451 195 42 0 0 chr11 116044982 116045006 -32738466 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 297 325 20 53 chr11 116046635 116046786 -32736686 - MER5B DNA MER1_type -16 162 17 288 0 0 0 chr11 116047018 116047050 -32736422 + (T)n Simple_repeat Simple_repeat 1 32 0 384 275 115 89 chr11 116047436 116047705 -32735767 - L3 LINE CR1 -83 1494 1219 507 263 125 83 chr11 116048667 116048956 -32734516 + LTR16A LTR ERVL 62 362 -88 405 173 13 0 chr11 116049015 116049090 -32734382 + MLT1-int LTR MaLR 962 1037 -334 249 341 0 0 chr11 116049095 116049180 -32734292 + LTR16A LTR ERVL 366 450 0 244 262 35 48 chr11 116049182 116049327 -32734145 - L1ME LINE L1 -256 5865 5723 209 222 111 0 chr11 116049670 116049724 -32733748 + L2 LINE L2 3250 3309 -4 2063 100 17 37 chr11 116051430 116051729 -32731743 + AluSc SINE Alu 1 293 -16 2378 66 0 10 chr11 116051946 116052249 -32731223 - AluSc SINE Alu -9 300 1 24 0 0 0 chr11 116052417 116052441 -32731031 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr11 116053144 116053166 -32730306 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr11 116053234 116053257 -32730215 + AT_rich Low_complexity Low_complexity 1 23 0 209 344 141 23 chr11 116054043 116054171 -32729301 - L3b LINE CR1 -41 1542 1400 368 264 113 25 chr11 116054191 116054350 -32729122 - MIR SINE MIR -70 192 20 190 288 110 14 chr11 116054368 116054441 -32729031 - L3b LINE CR1 -156 1427 1348 539 293 63 29 chr11 116054815 116055054 -32728418 - MIR SINE MIR 0 262 16 243 276 60 52 chr11 116055133 116055267 -32728205 + MIR SINE MIR 77 211 -51 747 182 0 0 chr11 116055682 116055803 -32727669 - AluSq/x SINE Alu -192 121 1 371 83 17 0 chr11 116056723 116056783 -32726689 + (TC)n Simple_repeat Simple_repeat 2 62 0 1905 140 0 7 chr11 116056911 116057217 -32726255 - AluJb SINE Alu 0 305 2 738 293 31 27 chr11 116057227 116057452 -32726020 - MIR SINE MIR -13 249 24 305 321 12 12 chr11 116058531 116058615 -32724857 + L2 LINE L2 3187 3270 -2 223 346 39 0 chr11 116059450 116059554 -32723918 - L2 LINE L2 -1 3271 3164 266 235 24 0 chr11 116059745 116059830 -32723642 + (CATA)n Simple_repeat Simple_repeat 2 88 0 369 271 86 13 chr11 116059835 116059986 -32723486 - MIR SINE MIR -30 232 71 24 0 0 29 chr11 116060207 116060223 -32723249 + AT_rich Low_complexity Low_complexity 1 16 -18 2394 71 0 3 chr11 116060223 116060518 -32722954 - AluY SINE Alu -17 294 1 24 0 0 29 chr11 116060518 116060536 -32722936 + AT_rich Low_complexity Low_complexity 16 34 0 1093 229 168 0 chr11 116060881 116061138 -32722334 + L1MC4 LINE L1 7576 7788 -254 270 116 0 0 chr11 116061138 116061181 -32722291 + (TG)n Simple_repeat Simple_repeat 2 44 0 1093 229 168 0 chr11 116061181 116061321 -32722151 + L1MC4 LINE L1 7788 8040 -2 239 122 20 0 chr11 116062400 116062449 -32721023 + (TA)n Simple_repeat Simple_repeat 1 50 0 254 269 197 26 chr11 116062628 116062655 -32720817 + L2 LINE L2 3075 3096 -217 2287 103 3 3 chr11 116062655 116062967 -32720505 - AluSx SINE Alu 0 312 1 254 269 197 26 chr11 116062967 116063132 -32720340 + L2 LINE L2 3096 3300 -13 1683 210 37 82 chr11 116064253 116064762 -32718710 + MLT2B3 LTR ERVL 69 554 0 402 223 82 38 chr11 116064823 116065007 -32718465 - LTR16C LTR ERVL -27 464 273 1859 184 33 6 chr11 116065370 116065706 -32717766 - MER7A DNA MER2_type -3 343 1 287 233 38 98 chr11 116065726 116065859 -32717613 + MER112 DNA MER1_type 86 210 -50 2403 73 0 3 chr11 116067377 116067680 -32715792 + AluY SINE Alu 1 302 -9 512 324 55 17 chr11 116068329 116068567 -32714905 - MIR SINE MIR -14 248 2 1753 62 5 0 chr11 116070287 116070495 -32712977 + AluY SINE Alu 93 301 -10 181 217 17 50 chr11 116070872 116070932 -32712540 - L2 LINE L2 -1 3312 3255 211 235 29 15 chr11 116071009 116071077 -32712395 - L2 LINE L2 -94 3219 3151 269 319 117 48 chr11 116071461 116071709 -32711763 - L2 LINE L2 -615 2699 2435 4482 90 35 2 chr11 116071918 116072550 -32710922 + L1PA11 LINE L1 5522 6174 0 1079 185 60 41 chr11 116073370 116073684 -32709788 + MER33 DNA MER1_type 5 324 0 2056 114 11 0 chr11 116073767 116074047 -32709425 + AluSp SINE Alu 1 283 -30 369 0 0 0 chr11 116074050 116074091 -32709381 + (CATA)n Simple_repeat Simple_repeat 2 42 0 1873 144 0 13 chr11 116074437 116074742 -32708730 + AluSx SINE Alu 1 301 -11 1851 173 20 0 chr11 116074742 116075084 -32708388 + L1P LINE L1 3780 4128 -2018 * 4944 169 50 23 chr11 116075068 116076825 -32706647 + L1MA9 LINE L1 4344 6164 -148 195 69 0 0 chr11 116076825 116076854 -32706618 + (CA)n Simple_repeat Simple_repeat 2 30 0 4944 169 50 23 chr11 116076854 116077008 -32706464 + L1MA9 LINE L1 6164 6312 0 208 306 48 0 chr11 116077070 116077132 -32706340 + L2 LINE L2 3248 3312 -1 * 227 325 0 25 chr11 116077122 116077202 -32706270 + MIR SINE MIR 178 255 -7 280 262 105 20 chr11 116077404 116077527 -32705945 - MIR SINE MIR -61 147 38 11137 58 25 0 chr11 116078216 116079680 -32703792 - L1PA5 LINE L1 -3576 2570 1071 22050 42 5 0 chr11 116079680 116083227 -32700245 + L1PA5 LINE L1 2560 6153 -1 249 293 109 14 chr11 116083295 116083442 -32700030 - L3 LINE CR1 -126 1451 1291 279 111 0 0 chr11 116083750 116083795 -32699677 - MADE1 DNA Mariner -34 46 2 1486 103 40 0 chr11 116083975 116084198 -32699274 + L1MA2 LINE L1 6073 6304 0 206 338 14 0 chr11 116084219 116084293 -32699179 + MIR SINE MIR 143 217 -45 1663 198 33 19 chr11 116084888 116085252 -32698220 - MLT1A2 LTR MaLR -2 372 4 419 239 84 36 chr11 116085921 116086088 -32697384 - MIR SINE MIR 0 262 88 2346 91 0 0 chr11 116087576 116087873 -32695599 - AluSx SINE Alu -15 297 1 452 248 131 0 chr11 116087873 116088018 -32695454 - MER97c DNA MER1_type? -925 165 2 262 330 148 9 chr11 116088204 116088319 -32695153 + MIR SINE MIR 20 150 -112 212 130 22 0 chr11 116088408 116088454 -32695018 + (CA)n Simple_repeat Simple_repeat 2 48 0 216 371 66 24 chr11 116088495 116088662 -32694810 - MIR SINE MIR 0 262 89 2064 186 33 35 chr11 116089922 116090474 -32692998 + MLT2A2 LTR ERVL 1 554 0 205 205 0 0 chr11 116090584 116090623 -32692849 + (TA)n Simple_repeat Simple_repeat 2 40 0 230 0 33 0 chr11 116090954 116090984 -32692488 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 23 0 0 0 chr11 116092044 116092067 -32691405 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr11 116093434 116093466 -32690006 + AT_rich Low_complexity Low_complexity 1 32 0 181 347 107 50 chr11 116094116 116094237 -32689235 - L2 LINE L2 -2 3270 3143 29 0 0 0 chr11 116094488 116094517 -32688955 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 8 0 chr11 116094948 116095007 -32688465 + AT_rich Low_complexity Low_complexity 1 24 0 414 165 0 0 chr11 116095685 116095770 -32687702 - L1PA13 LINE L1 0 6163 6079 340 304 31 68 chr11 116095950 116096111 -32687361 + MIR SINE MIR 2 156 -106 403 329 86 30 chr11 116096138 116096372 -32687100 - MIR SINE MIR -5 257 11 3286 198 38 24 chr11 116096846 116097807 -32685665 + L1MDb LINE L1 458 1858 -4548 313 44 0 0 chr11 116097807 116097852 -32685620 + L1PA3 LINE L1 6111 6155 0 3286 198 38 24 chr11 116097852 116098033 -32685439 + L1MDb LINE L1 1858 2035 -4371 978 242 40 18 chr11 116098121 116098394 -32685078 + MLT1C LTR MaLR 188 466 -1 2095 258 55 39 chr11 116098429 116098496 -32684976 + L1MDb LINE L1 2889 2953 -3453 198 0 0 0 chr11 116098496 116098518 -32684954 + (A)n Simple_repeat Simple_repeat 1 22 0 2095 258 55 39 chr11 116098518 116099409 -32684063 + L1MDb LINE L1 2953 3884 -2522 2691 145 45 7 chr11 116099706 116100441 -32683031 + L1MA8 LINE L1 5012 5770 -521 5226 146 19 8 chr11 116100465 116101317 -32682155 + Tigger1 DNA MER2_type 1 861 -1557 4669 147 23 4 chr11 116101314 116102105 -32681367 + Tigger1 DNA MER2_type 1613 2418 0 * 1208 174 27 35 chr11 116102106 116102364 -32681108 + L1MA8 LINE L1 5787 6042 -249 22 0 0 0 chr11 116102532 116102554 -32680918 + AT_rich Low_complexity Low_complexity 1 22 0 345 176 29 0 chr11 116102635 116102703 -32680769 + Tigger1 DNA MER2_type 2068 2137 -281 1895 159 3 0 chr11 116102737 116103026 -32680446 - AluSx SINE Alu -22 290 1 24 77 0 0 chr11 116104155 116104207 -32679265 + AT_rich Low_complexity Low_complexity 1 52 0 2023 141 0 0 chr11 116104683 116104996 -32678476 - L1PA16 LINE L1 0 6166 5854 4342 170 54 5 chr11 116105434 116106272 -32677200 - L1PB4 LINE L1 -12 6144 5263 21 36 0 0 chr11 116106534 116106562 -32676910 + AT_rich Low_complexity Low_complexity 1 28 0 1011 74 74 7 chr11 116107681 116107830 -32675642 + MER30 DNA MER1_type 1 159 -71 1455 96 60 5 chr11 116107990 116108208 -32675264 + MER30 DNA MER1_type 1 230 0 1944 222 21 12 chr11 116110346 116110865 -32672607 - L1 LINE L1 -808 5338 4815 217 346 37 52 chr11 116110929 116111065 -32672407 - MIR3 SINE MIR -45 163 30 200 348 56 11 chr11 116111571 116111660 -32671812 - MIR SINE MIR -134 128 36 404 367 0 14 chr11 116111694 116111833 -32671639 + MIR SINE MIR 20 156 -106 410 73 0 0 chr11 116111858 116111913 -32671559 + MLT2A2 LTR ERVL 1 55 -398 5540 78 7 18 chr11 116111920 116112684 -32670788 + HERVL-A2 LTR ERVL 4900 5654 0 3411 78 11 0 chr11 116112684 116113132 -32670340 + MLT2A2 LTR ERVL 1 453 0 189 279 35 47 chr11 116113133 116113219 -32670253 + MIR SINE MIR 178 262 0 232 207 86 0 chr11 116113415 116113473 -32669999 + L1MC/D LINE L1 5693 5755 -2053 602 248 48 71 chr11 116113917 116114170 -32669302 + MLT1J2 LTR MaLR 173 450 0 1288 193 31 102 chr11 116115252 116115672 -32667800 - MLT1B LTR MaLR 0 390 1 418 326 54 29 chr11 116115780 116116022 -32667450 + L2 LINE L2 3059 3306 -7 2418 150 38 5 chr11 116116244 116116691 -32666781 - L1MA9 LINE L1 0 6312 5851 494 305 60 52 chr11 116117223 116117819 -32665653 + L1MEd LINE L1 561 1161 -4958 1552 143 32 4 chr11 116118459 116118710 -32664762 - Tigger2 DNA MER2_type 0 2718 2461 3945 155 60 10 chr11 116118764 116119318 -32664154 - Tigger2 DNA MER2_type -1961 757 157 3696 132 7 3 chr11 116119318 116119910 -32663562 - L1PA14 LINE L1 -1 6160 5567 3945 155 60 10 chr11 116119910 116120076 -32663396 - Tigger2 DNA MER2_type -2561 157 1 242 380 63 14 chr11 116120552 116120694 -32662778 + L2 LINE L2 3124 3272 0 4509 42 16 2 chr11 116120972 116121636 -32661836 - L1P2 LINE L1 -661 5493 4821 5918 38 0 0 chr11 116121636 116122337 -32661135 + L1PA5 LINE L1 5438 6142 -12 338 318 48 126 chr11 116123380 116123842 -32659630 + L2 LINE L2 2846 3271 -1 204 280 189 0 chr11 116123857 116123989 -32659483 + L2 LINE L2 3139 3295 -18 1428 260 104 4 chr11 116124231 116124701 -32658771 + LTR33 LTR ERVL 3 519 -2 281 184 160 80 chr11 116125078 116125213 -32658259 - MER5A DNA MER1_type -37 152 4 1025 107 143 0 chr11 116125578 116125746 -32657726 + L1PB1 LINE L1 5960 6151 0 329 328 98 26 chr11 116125973 116126126 -32657346 - MIR3 SINE MIR -38 170 8 337 67 0 0 chr11 116126327 116126372 -32657100 + L1P5 LINE L1 5658 5702 -449 426 221 0 23 chr11 116127433 116127519 -32655953 + MER5B DNA MER1_type 7 90 -88 1211 270 196 2 chr11 116128045 116128638 -32654834 + L1MC4 LINE L1 7144 7851 -191 364 290 217 11 chr11 116129079 116129365 -32654107 + HAL1b LINE L1 156 500 -848 34 0 0 0 chr11 116129559 116129593 -32653879 + AT_rich Low_complexity Low_complexity 1 34 0 241 314 97 24 chr11 116129669 116129793 -32653679 + MIR SINE MIR 130 262 0 670 293 84 26 chr11 116130835 116131180 -32652292 - MARNA DNA Mariner -217 369 5 240 226 0 0 chr11 116131385 116131438 -32652034 + L1 LINE L1 5223 5275 -871 215 143 86 0 chr11 116131640 116131710 -32651762 + (TA)n Simple_repeat Simple_repeat 1 76 0 1146 188 26 37 chr11 116132192 116132463 -32651009 - L1MB8 LINE L1 -1 6177 5910 286 130 0 72 chr11 116132464 116132533 -32650939 - L1M4 LINE L1 -1091 5055 4992 8572 200 37 46 chr11 116132540 116133511 -32649961 - L1MA5 LINE L1 -5 6997 6019 192 40 0 0 chr11 116133511 116133536 -32649936 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 8572 200 37 46 chr11 116133536 116137856 -32645616 - L1MA5 LINE L1 -983 6019 11 1266 228 37 48 chr11 116137866 116138221 -32645251 - L1M4 LINE L1 -1137 5009 4659 423 0 0 0 chr11 116138221 116138268 -32645204 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1050 165 0 39 chr11 116138273 116138455 -32645017 - AluJb SINE Alu -32 280 106 * 1212 141 0 0 chr11 116138454 116138631 -32644841 + AluSg/x SINE Alu 120 296 -16 21 57 0 0 chr11 116138928 116138963 -32644509 + AT_rich Low_complexity Low_complexity 1 35 0 1654 176 53 15 chr11 116139441 116139782 -32643690 - MLT1A1 LTR MaLR 0 365 12 1754 157 31 40 chr11 116139950 116140274 -32643198 - MER2 DNA MER2_type 0 345 25 573 295 22 27 chr11 116140756 116140939 -32642533 - MIR SINE MIR -71 191 10 2076 143 36 0 chr11 116141976 116142312 -32641160 + MER7A DNA MER2_type 1 346 0 521 271 70 31 chr11 116143312 116143541 -32639931 + LTR68 LTR ERV1 199 436 -304 344 291 163 41 chr11 116144493 116144689 -32638783 + MIR SINE MIR 11 230 -32 180 0 0 0 chr11 116144715 116144735 -32638737 + (CAT)n Simple_repeat Simple_repeat 2 21 0 13593 86 24 51 chr11 116145430 116146363 -32637109 - L1P LINE L1 -959 5187 4231 1226 99 42 5 chr11 116146363 116146550 -32636922 + L1PA7 LINE L1 5954 6152 -2 13593 86 24 51 chr11 116146550 116147763 -32635709 - L1P LINE L1 -1915 4231 3098 2815 67 3 3 chr11 116147763 116148129 -32635343 + L1PA7 LINE L1 5774 6146 -8 36 0 0 0 chr11 116148202 116148238 -32635234 + AT_rich Low_complexity Low_complexity 1 36 0 398 309 32 8 chr11 116148248 116148371 -32635101 + L2 LINE L2 3178 3303 -10 242 282 99 0 chr11 116148493 116148564 -32634908 + MIR3 SINE MIR 108 185 -23 254 333 0 0 chr11 116148570 116148648 -32634824 + GA-rich Low_complexity Low_complexity 3 80 0 9822 40 5 0 chr11 116150614 116152587 -32630885 + L1PA5 LINE L1 4174 6149 -5 24 0 0 0 chr11 116152710 116152734 -32630738 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr11 116152799 116152820 -32630652 + AT_rich Low_complexity Low_complexity 1 21 0 204 358 168 0 chr11 116153320 116153415 -32630057 + L2 LINE L2 3158 3268 -4 1310 229 62 31 chr11 116153643 116154001 -32629471 - MLT1C LTR MaLR -34 433 65 919 316 173 33 chr11 116154035 116155047 -32628425 + L3 LINE CR1 327 1480 -97 6284 90 4 4 chr11 116155114 116156138 -32627334 - L1PA8A LINE L1 0 6131 5109 222 388 103 0 chr11 116156399 116156515 -32626957 + L2 LINE L2 3141 3268 -4 23 54 0 0 chr11 116157105 116157142 -32626330 + AT_rich Low_complexity Low_complexity 1 37 0 789 306 50 36 chr11 116157692 116157993 -32625479 - MLT1K LTR MaLR -30 558 254 1075 200 41 8 chr11 116159154 116159427 -32624045 + MLT1D LTR MaLR 1 322 -183 1251 176 17 0 chr11 116159429 116159668 -32623804 - L1P LINE L1 -1774 4372 4130 5500 126 14 9 chr11 116159668 116161118 -32622354 + L1PA13 LINE L1 4690 6163 0 1017 181 25 8 chr11 116161127 116161318 -32622154 + MLT1D LTR MaLR 308 588 -5 193 335 92 49 chr11 116161560 116161724 -32621748 - L2 LINE L2 -5 3267 3097 490 104 0 39 chr11 116162270 116162347 -32621125 + LTR32 LTR ERVL 15 88 -383 451 162 0 0 chr11 116162327 116162401 -32621071 + LTR32 LTR ERVL 15 88 -383 * 559 95 0 0 chr11 116162381 116162455 -32621017 + LTR32 LTR ERVL 15 88 -383 * 2342 176 45 27 chr11 116162435 116162884 -32620588 + LTR32 LTR ERVL 15 471 0 591 226 41 0 chr11 116162982 116163128 -32620344 + MER103 DNA DNA 2 153 -13 580 290 91 23 chr11 116163233 116163409 -32620063 + MIR3 SINE MIR 16 203 -5 23 54 0 0 chr11 116163694 116163731 -32619741 + AT_rich Low_complexity Low_complexity 1 37 0 224 128 0 43 chr11 116164380 116164427 -32619045 + (TTTTC)n Simple_repeat Simple_repeat 5 49 0 225 0 0 0 chr11 116165705 116165730 -32617742 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 282 339 9 18 chr11 116165734 116165843 -32617629 - L2 LINE L2 -22 3291 3184 2773 72 21 0 chr11 116166144 116166518 -32616954 + L1PA5 LINE L1 5772 6153 -1 184 324 103 14 chr11 116166697 116166842 -32616630 - L2 LINE L2 -267 3005 2848 * 277 332 86 5 chr11 116166823 116167043 -32616429 - L2 LINE L2 -1157 2157 1920 254 281 21 52 chr11 116167969 116168065 -32615407 + MIR SINE MIR 120 212 -50 198 143 0 0 chr11 116168279 116168314 -32615158 + (GA)n Simple_repeat Simple_repeat 2 36 0 1085 286 109 24 chr11 116168361 116168829 -32614643 + MLT1J LTR MaLR 3 510 -1 191 59 0 29 chr11 116168832 116168866 -32614606 + (TATATG)n Simple_repeat Simple_repeat 3 35 0 23 78 0 0 chr11 116168916 116168967 -32614505 + AT_rich Low_complexity Low_complexity 1 51 0 232 356 0 0 chr11 116169134 116169207 -32614265 + L2 LINE L2 2708 2780 -534 2315 75 0 23 chr11 116170501 116170809 -32612663 + AluY SINE Alu 1 301 -10 2258 252 87 13 chr11 116173199 116174495 -32608977 - L1ME LINE L1 -403 5759 4377 34 0 0 0 chr11 116174495 116174529 -32608943 + AT_rich Low_complexity Low_complexity 1 34 0 3538 188 0 2 chr11 116175849 116176465 -32607007 + L1MC1 LINE L1 1 615 -5811 4127 238 59 11 chr11 116176507 116177700 -32605772 + L1MC1 LINE L1 2647 3910 -2516 2523 114 14 3 chr11 116177700 116178060 -32605412 + THE1B LTR MaLR 1 364 0 4127 238 59 11 chr11 116178060 116178184 -32605288 + L1MC1 LINE L1 3910 4027 -2399 1048 100 67 0 chr11 116178197 116178347 -32605125 + AluSg/x SINE Alu 134 293 -16 239 154 0 19 chr11 116178347 116178399 -32605073 + (TA)n Simple_repeat Simple_repeat 1 51 0 6165 203 22 15 chr11 116178399 116178809 -32604663 + L1MC1 LINE L1 4025 4431 -2182 978 190 59 123 chr11 116178809 116179199 -32604273 + MLT1A1 LTR MaLR 1 365 0 6165 203 22 15 chr11 116179199 116181361 -32602111 + L1MC1 LINE L1 4431 6611 -2 258 235 44 0 chr11 116181356 116181424 -32602048 + L1ME3 LINE L1 6091 6161 -1 * 2336 70 0 7 chr11 116182127 116182428 -32601044 + AluY SINE Alu 1 299 -12 1317 170 104 0 chr11 116182523 116182782 -32600690 - AluJb SINE Alu -26 286 1 8894 128 42 28 chr11 116182973 116183831 -32599641 - Tigger1 DNA MER2_type 0 2418 1527 3487 55 40 0 chr11 116183831 116184286 -32599186 - L1PA5 LINE L1 -13 6141 5669 8894 128 42 28 chr11 116184286 116184941 -32598531 - Tigger1 DNA MER2_type -891 1527 883 1838 155 56 0 chr11 116184972 116185295 -32598177 - MER2 DNA MER2_type -1 343 3 200 277 64 53 chr11 116186920 116187014 -32596458 - L2 LINE L2 -11 3302 3208 638 210 62 13 chr11 116187616 116187893 -32595579 - MLT1B LTR MaLR 0 374 1 310 160 101 59 chr11 116187956 116188075 -32595397 + MER65B LTR ERV1 1 124 -407 6641 62 15 2 chr11 116188238 116189415 -32594057 + L1PA7 LINE L1 4962 6149 -5 4012 28 0 0 chr11 116189732 116190201 -32593271 - L1PA3 LINE L1 -3 6152 5684 238 325 25 0 chr11 116190570 116190690 -32592782 + L1ME4a LINE L1 4536 4658 -1488 3020 205 67 6 chr11 116191487 116191680 -32591792 - L1MD2 LINE L1 -4 6355 6175 315 0 0 0 chr11 116191680 116191715 -32591757 + (TG)n Simple_repeat Simple_repeat 2 36 0 3020 205 67 6 chr11 116191715 116192227 -32591245 - L1MD2 LINE L1 -184 6175 5607 505 322 108 5 chr11 116192239 116192618 -32590854 + L1ME4a LINE L1 5517 5934 -187 361 315 102 8 chr11 116192875 116193002 -32590470 + MLT1J2 LTR MaLR 26 164 -286 182 114 0 29 chr11 116193381 116193416 -32590056 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 23 54 0 0 chr11 116195434 116195471 -32588001 + AT_rich Low_complexity Low_complexity 1 37 0 2064 168 30 48 chr11 116195525 116195965 -32587507 - MSTB1 LTR MaLR 0 432 1 474 179 0 0 chr11 116196304 116196399 -32587073 + A-rich Low_complexity Low_complexity 1 95 0 2250 80 3 0 chr11 116196576 116196865 -32586607 - AluY SINE Alu -21 290 1 26 0 0 0 chr11 116197281 116197307 -32586165 + AT_rich Low_complexity Low_complexity 1 26 0 1023 142 11 33 chr11 116197492 116197675 -32585797 - AluJb SINE Alu -10 302 124 1080 141 23 55 chr11 116197774 116197994 -32585478 - AluY SINE Alu -98 213 1 1428 209 64 9 chr11 116198688 116199018 -32584454 - MER7A DNA MER2_type 0 346 1 614 313 72 19 chr11 116199760 116200022 -32583450 - L3 LINE CR1 -72 1505 1230 268 262 94 57 chr11 116200365 116200453 -32583019 - MIR SINE MIR -79 129 27 724 108 0 0 chr11 116200455 116200557 -32582915 - AluSg/x SINE Alu -19 291 190 537 144 0 31 chr11 116200916 116201013 -32582459 + AluSg SINE Alu 1 94 -216 2654 251 63 12 chr11 116201253 116202084 -32581388 + L1ME1 LINE L1 5255 6127 -39 5125 157 32 7 chr11 116202623 116204214 -32579258 + L1PA16 LINE L1 4520 6142 -24 25 31 0 0 chr11 116204224 116204256 -32579216 + AT_rich Low_complexity Low_complexity 1 32 0 348 224 37 37 chr11 116205434 116205541 -32577931 - MIR SINE MIR 0 262 156 2086 105 3 43 chr11 116205681 116206006 -32577466 + AluSx SINE Alu 1 312 0 25 0 0 0 chr11 116206934 116206959 -32576513 + AT_rich Low_complexity Low_complexity 1 25 0 2196 100 0 20 chr11 116208068 116208367 -32575105 - AluSq SINE Alu -20 293 1 1895 146 54 3 chr11 116210535 116210871 -32572601 - L1MC1 LINE L1 0 6333 5981 284 298 113 60 chr11 116212223 116212471 -32571001 + L2 LINE L2 1837 2097 -1217 22 70 0 0 chr11 116213065 116213108 -32570364 + AT_rich Low_complexity Low_complexity 1 43 0 186 212 121 45 chr11 116213699 116213765 -32569707 + L2 LINE L2 3204 3274 -39 1884 144 0 29 chr11 116214047 116214359 -32569113 + AluJb SINE Alu 1 303 -9 290 206 14 0 chr11 116214506 116214579 -32568893 + GA-rich Low_complexity Low_complexity 2 75 0 303 231 22 60 chr11 116215067 116215249 -32568223 + A-rich Low_complexity Low_complexity 1 175 0 523 168 28 19 chr11 116215318 116215425 -32568047 + L1MCa LINE L1 20 127 -6299 * 1911 209 85 10 chr11 116215404 116215975 -32567497 + L1MCa LINE L1 1569 2231 -4195 829 309 105 37 chr11 116217442 116217899 -32565573 - L2 LINE L2 -15 3298 2811 4387 42 0 0 chr11 116217929 116218458 -32565014 + L1PA4 LINE L1 5625 6153 -2 232 241 0 35 chr11 116219011 116219098 -32564374 + (CA)n Simple_repeat Simple_repeat 1 84 0 1563 159 19 7 chr11 116219735 116220044 -32563428 + L1MA9 LINE L1 6000 6312 0 415 367 10 10 chr11 116220119 116220315 -32563157 - L2 LINE L2 -235 3037 2842 424 323 31 0 chr11 116222125 116222252 -32561220 + MIR SINE MIR 118 248 -14 186 103 0 0 chr11 116222253 116222282 -32561190 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 261 331 98 43 chr11 116222282 116222445 -32561027 + L2 LINE L2 3101 3272 0 196 260 40 0 chr11 116222674 116222724 -32560748 + MIR SINE MIR 112 163 -99 392 368 96 0 chr11 116222823 116222959 -32560513 - L2 LINE L2 -1 3271 3123 274 286 27 0 chr11 116222959 116223071 -32560401 + (TA)n Simple_repeat Simple_repeat 2 116 0 1606 180 10 29 chr11 116223801 116224107 -32559365 + AluJo SINE Alu 3 302 -10 21 36 0 0 chr11 116224413 116224441 -32559031 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 116225409 116225431 -32558041 + AT_rich Low_complexity Low_complexity 1 22 0 1270 267 76 21 chr11 116225578 116226102 -32557370 - L1ME3A LINE L1 -223 5930 5378 378 306 111 39 chr11 116226118 116226451 -32557021 - L1ME3A LINE L1 -905 5224 4868 2139 94 7 3 chr11 116226473 116226761 -32556711 - AluSg1 SINE Alu -18 291 3 314 273 49 68 chr11 116226971 116227337 -32556135 - L1ME3A LINE L1 -4975 1144 786 325 277 82 36 chr11 116227467 116227687 -32555785 + L1M4 LINE L1 5009 5238 -908 30 0 0 0 chr11 116227890 116227920 -32555552 + AT_rich Low_complexity Low_complexity 1 30 0 223 271 8 147 chr11 116229428 116229503 -32553969 - MIR SINE MIR -41 221 137 2135 112 10 0 chr11 116229503 116229799 -32553673 + AluSc SINE Alu 1 299 -10 2871 72 3 3 chr11 116229799 116230174 -32553298 + L1PA7 LINE L1 5778 6152 -2 223 271 8 147 chr11 116230174 116230226 -32553246 - MIR SINE MIR -123 139 111 23 0 0 0 chr11 116230329 116230352 -32553120 + AT_rich Low_complexity Low_complexity 1 23 0 322 26 0 0 chr11 116230455 116230494 -32552978 + MADE1 DNA Mariner 42 80 0 262 319 34 67 chr11 116230738 116230779 -32552693 + L2 LINE L2 3143 3184 -88 1789 69 0 22 chr11 116230779 116231011 -32552461 + AluY SINE Alu 69 295 -16 262 319 34 67 chr11 116231011 116231088 -32552384 + L2 LINE L2 3184 3257 -15 26 64 0 0 chr11 116231281 116231328 -32552144 + AT_rich Low_complexity Low_complexity 1 47 0 1380 169 85 4 chr11 116232237 116232485 -32550987 + AluJo SINE Alu 6 273 -39 939 300 25 48 chr11 116232681 116233034 -32550438 - MLT1I LTR MaLR -10 399 55 231 36 0 0 chr11 116233446 116233474 -32549998 + (A)n Simple_repeat Simple_repeat 1 28 0 1715 168 0 17 chr11 116233900 116234198 -32549274 - AluJb SINE Alu -15 297 5 462 302 50 19 chr11 116238004 116238163 -32545309 + MER5A DNA MER1_type 26 189 0 239 0 32 0 chr11 116238553 116238584 -32544888 + (CAAAAA)n Simple_repeat Simple_repeat 4 35 0 351 160 52 10 chr11 116239461 116239767 -32543705 - L1MB2 LINE L1 -2 6169 5872 322 204 21 0 chr11 116239839 116239932 -32543540 + GA-rich Low_complexity Low_complexity 3 97 0 * 379 179 32 0 chr11 116239922 116240017 -32543455 + G-rich Low_complexity Low_complexity 2 99 0 226 324 0 0 chr11 116240039 116240107 -32543365 + GA-rich Low_complexity Low_complexity 4 71 0 269 249 77 39 chr11 116240303 116240484 -32542988 - L1MA3 LINE L1 -177 7547 7360 33 108 0 0 chr11 116240597 116240690 -32542782 + AT_rich Low_complexity Low_complexity 1 93 0 215 91 0 45 chr11 116240690 116240734 -32542738 + (GGGAA)n Simple_repeat Simple_repeat 4 45 0 4744 166 12 30 chr11 116240765 116242319 -32541153 - L1MA3 LINE L1 -397 7327 5823 * 14109 162 25 12 chr11 116242317 116244722 -32538750 - L1MA3 LINE L1 -5121 2444 9 3181 150 5 34 chr11 116245008 116245238 -32538234 + L1P LINE L1 3565 3800 -2346 2319 104 0 0 chr11 116245238 116245537 -32537935 + AluSg SINE Alu 1 299 -11 3181 150 5 34 chr11 116245537 116245887 -32537585 + L1P LINE L1 3800 4128 -2018 * 4325 167 44 19 chr11 116245871 116247596 -32535876 + L1MA9 LINE L1 4344 6116 -196 254 269 197 26 chr11 116297810 116297975 -32485497 - L2 LINE L2 -13 3300 3096 2287 103 3 3 chr11 116297975 116298287 -32485185 + AluSx SINE Alu 1 312 0 254 269 197 26 chr11 116298287 116298314 -32485158 - L2 LINE L2 -217 3096 3075 223 346 39 0 chr11 116298618 116298722 -32484750 - L2 LINE L2 -1 3271 3164 266 235 24 0 chr11 116298913 116298998 -32484474 + (CATA)n Simple_repeat Simple_repeat 2 88 0 369 271 86 13 chr11 116299003 116299154 -32484318 - MIR SINE MIR -30 232 71 24 0 0 29 chr11 116299375 116299391 -32484081 + AT_rich Low_complexity Low_complexity 1 16 -18 2394 71 0 3 chr11 116299391 116299686 -32483786 - AluY SINE Alu -17 294 1 24 0 0 29 chr11 116299686 116299704 -32483768 + AT_rich Low_complexity Low_complexity 16 34 0 692 247 5 0 chr11 116300049 116300239 -32483233 + L1MC4 LINE L1 7576 7766 -276 671 216 60 0 chr11 116300248 116300306 -32483166 + L1MC4 LINE L1 7830 7883 -159 270 116 0 0 chr11 116300306 116300349 -32483123 + (TG)n Simple_repeat Simple_repeat 2 44 0 671 216 60 0 chr11 116300349 116300489 -32482983 + L1MC4 LINE L1 7883 8040 -2 272 102 20 0 chr11 116301568 116301617 -32481855 + (TA)n Simple_repeat Simple_repeat 1 50 0 2071 100 17 37 chr11 116301814 116302114 -32481358 - AluSc SINE Alu -15 294 1 209 222 111 0 chr11 116303820 116303874 -32479598 - L2 LINE L2 -4 3309 3250 244 262 35 48 chr11 116304217 116304362 -32479110 + L1ME LINE L1 5723 5865 -256 249 341 0 0 chr11 116304364 116304449 -32479023 - LTR16A LTR ERVL 0 450 366 405 173 13 0 chr11 116304454 116304529 -32478943 - MLT1-int LTR MaLR -334 1037 962 507 263 125 83 chr11 116304588 116304877 -32478595 - LTR16A LTR ERVL -88 362 62 384 275 115 89 chr11 116305839 116306108 -32477364 + L3 LINE CR1 1219 1494 -83 25 0 0 0 chr11 116306950 116306975 -32476497 + AT_rich Low_complexity Low_complexity 1 25 0 297 0 0 0 chr11 116307016 116307049 -32476423 + (A)n Simple_repeat Simple_repeat 1 33 0 25677 149 18 16 chr11 116307163 116308414 -32475058 + L1PA8A LINE L1 2 1250 -5196 225 65 0 0 chr11 116308414 116308445 -32475027 + (CAA)n Simple_repeat Simple_repeat 3 33 0 25677 149 18 16 chr11 116308445 116309642 -32473830 + L1PA8A LINE L1 1250 2444 -4002 2260 98 24 0 chr11 116309642 116309937 -32473535 + AluSp SINE Alu 1 302 -11 25677 149 18 16 chr11 116309937 116311974 -32471498 + L1PA8A LINE L1 2444 4560 -1886 1923 133 39 0 chr11 116311974 116312260 -32471212 + AluSx SINE Alu 1 297 -15 25677 149 18 16 chr11 116312260 116314138 -32469334 + L1PA8A LINE L1 4560 6434 -12 453 191 0 0 chr11 116314682 116314787 -32468685 + GA-rich Low_complexity Low_complexity 4 108 0 297 325 20 53 chr11 116315136 116315287 -32468185 + MER5B DNA MER1_type 17 162 -16 195 42 0 0 chr11 116316916 116316940 -32466532 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6582 181 44 16 chr11 116317531 116318209 -32465263 + L1MC3 LINE L1 5451 6108 -1677 225 0 0 0 chr11 116318209 116318234 -32465238 + (TG)n Simple_repeat Simple_repeat 2 26 0 6582 181 44 16 chr11 116318234 116318938 -32464534 + L1MC3 LINE L1 6108 6872 -913 1595 176 69 0 chr11 116319018 116319364 -32464108 + L1MC3 LINE L1 7416 7785 0 747 171 53 32 chr11 116319721 116319908 -32463564 + L1MC3 LINE L1 5718 5908 -1877 331 329 21 49 chr11 116320629 116320772 -32462700 + MIR SINE MIR 2 140 -122 855 291 19 31 chr11 116320826 116321087 -32462385 - MIR SINE MIR 0 262 5 2569 62 0 0 chr11 116326163 116326471 -32457001 + AluY SINE Alu 1 308 -3 511 255 94 7 chr11 116326502 116326651 -32456821 + MIR SINE MIR 44 205 -57 495 311 55 34 chr11 116327841 116328076 -32455396 + MIR SINE MIR 22 261 -1 439 184 75 164 chr11 116328939 116329140 -32454332 - MIR SINE MIR 0 262 80 643 324 70 11 chr11 116329564 116329836 -32453636 - L2 LINE L2 -217 3096 2809 1005 191 11 5 chr11 116329889 116330077 -32453395 + MER5A DNA MER1_type 1 189 0 181 312 312 6 chr11 116330077 116330222 -32453250 - L2 LINE L2 -569 2745 2553 215 219 0 0 chr11 116330283 116330324 -32453148 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 202 288 113 0 chr11 116331660 116331740 -32451732 - MIR SINE MIR -1 261 173 200 213 32 53 chr11 116332398 116332492 -32450980 - MIR SINE MIR -43 219 128 21 36 0 0 chr11 116333126 116333154 -32450318 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr11 116333616 116333658 -32449814 + AT_rich Low_complexity Low_complexity 1 42 0 2026 136 0 7 chr11 116334356 116334657 -32448815 + AluSx SINE Alu 1 299 -13 200 361 82 25 chr11 116336248 116336406 -32447066 + L2 LINE L2 2877 3043 -229 180 300 141 59 chr11 116336654 116336874 -32446598 - L2 LINE L2 -361 2953 2716 27 49 0 0 chr11 116337002 116337043 -32446429 + AT_rich Low_complexity Low_complexity 1 41 0 317 269 96 13 chr11 116337146 116337302 -32446170 - L1M4 LINE L1 -1101 5045 4877 703 302 95 2 chr11 116337364 116337828 -32445644 - L1M4 LINE L1 -1945 4201 3695 391 284 144 68 chr11 116338131 116338775 -32444697 - L1M4 LINE L1 -2990 3156 2464 312 270 141 84 chr11 116338790 116338840 -32444632 - L1M4 LINE L1 -3581 2565 2519 2220 113 3 3 chr11 116338840 116339150 -32444322 - AluSg SINE Alu 0 310 1 312 270 141 84 chr11 116339150 116339196 -32444276 - L1M4 LINE L1 -3627 2519 2477 975 146 6 6 chr11 116339196 116339367 -32444105 - L1MB8 LINE L1 -5 6173 6003 312 270 141 84 chr11 116339367 116339673 -32443799 - L1M4 LINE L1 -3669 2477 2139 22 56 0 0 chr11 116339860 116339896 -32443576 + AT_rich Low_complexity Low_complexity 1 36 0 2295 70 7 3 chr11 116340096 116340404 -32443068 - AluSp SINE Alu 0 309 1 267 316 11 0 chr11 116340479 116340574 -32442898 + (TATATG)n Simple_repeat Simple_repeat 6 101 0 192 111 0 0 chr11 116340674 116340710 -32442762 + (T)n Simple_repeat Simple_repeat 1 36 0 444 284 88 65 chr11 116340768 116341109 -32442363 - HAL1 LINE L1 -909 1598 1250 934 127 0 7 chr11 116341435 116341585 -32441887 - L1PA13 LINE L1 -11 6152 6004 1148 176 0 15 chr11 116341636 116341841 -32441631 - AluJb SINE Alu -26 286 85 1892 144 0 29 chr11 116341851 116342164 -32441308 - AluJb SINE Alu -8 304 1 186 212 121 45 chr11 116342447 116342513 -32440959 - L2 LINE L2 -39 3274 3204 22 70 0 0 chr11 116343104 116343147 -32440325 + AT_rich Low_complexity Low_complexity 1 43 0 284 298 113 60 chr11 116343741 116343989 -32439483 - L2 LINE L2 -1217 2097 1837 1895 146 54 3 chr11 116345341 116345677 -32437795 + L1MC1 LINE L1 5981 6333 0 2196 100 0 20 chr11 116347845 116348144 -32435328 + AluSq SINE Alu 1 293 -20 25 0 0 0 chr11 116349253 116349278 -32434194 + AT_rich Low_complexity Low_complexity 1 25 0 2086 105 3 43 chr11 116350206 116350531 -32432941 - AluSx SINE Alu 0 312 1 192 77 0 103 chr11 116350820 116350859 -32432613 + L2 LINE L2 691 725 -2589 208 224 104 15 chr11 116351475 116351542 -32431930 - L2 LINE L2 -10 3262 3190 355 319 42 8 chr11 116351697 116351816 -32431656 + MIR SINE MIR 15 137 -125 499 71 0 0 chr11 116351850 116351920 -32431552 - L1PA7 LINE L1 -3 6151 6082 216 263 18 35 chr11 116352013 116352070 -32431402 - L2 LINE L2 -83 3189 3134 356 305 61 15 chr11 116353120 116353251 -32430221 - MIR SINE MIR -114 148 12 1814 139 13 40 chr11 116353465 116353767 -32429705 - AluSx SINE Alu -18 294 1 448 245 9 19 chr11 116353859 116353965 -32429507 - MER5B DNA MER1_type 0 178 74 789 272 35 38 chr11 116354321 116354582 -32428890 - MIR SINE MIR -1 261 2 2387 66 0 10 chr11 116354795 116355099 -32428373 - AluSc SINE Alu -8 301 1 24 0 0 0 chr11 116355267 116355291 -32428181 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr11 116355994 116356016 -32427456 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr11 116356084 116356107 -32427365 + AT_rich Low_complexity Low_complexity 1 23 0 209 344 141 23 chr11 116356894 116357022 -32426450 - L3b LINE CR1 -41 1542 1400 368 264 113 25 chr11 116357042 116357201 -32426271 - MIR SINE MIR -70 192 20 190 288 110 14 chr11 116357219 116357292 -32426180 - L3b LINE CR1 -156 1427 1348 539 293 63 29 chr11 116357666 116357905 -32425567 - MIR SINE MIR 0 262 16 243 276 60 52 chr11 116357984 116358118 -32425354 + MIR SINE MIR 77 211 -51 203 292 104 69 chr11 116360223 116360367 -32423105 + MIR SINE MIR 111 259 -3 209 180 60 0 chr11 116363099 116363149 -32420323 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 24 32 0 0 chr11 116363987 116364018 -32419454 + AT_rich Low_complexity Low_complexity 1 31 0 266 271 34 76 chr11 116364178 116364206 -32419266 - L2 LINE L2 0 3313 3285 2267 98 0 0 chr11 116364206 116364501 -32418971 + AluSx SINE Alu 3 297 -15 266 271 34 76 chr11 116364501 116364590 -32418882 - L2 LINE L2 -28 3285 3201 252 0 0 0 chr11 116364856 116364884 -32418588 + (TG)n Simple_repeat Simple_repeat 2 29 0 1641 270 78 2 chr11 116366257 116366668 -32416804 - LTR16A LTR ERVL -8 442 1 265 365 40 24 chr11 116366687 116366813 -32416659 + MIR SINE MIR 5 133 -75 537 305 106 59 chr11 116366983 116367370 -32416102 - L2 LINE L2 -10 3303 2899 246 330 11 0 chr11 116367482 116367570 -32415902 + MIR SINE MIR 173 261 -1 1557 174 14 18 chr11 116367747 116368028 -32415444 - AluJo SINE Alu -16 296 17 358 196 116 72 chr11 116368458 116368632 -32414840 - MIR SINE MIR -7 255 63 1996 125 17 3 chr11 116370471 116370760 -32412712 + AluSx SINE Alu 1 293 -19 387 233 23 0 chr11 116371029 116371115 -32412357 - L2 LINE L2 0 3272 3185 482 274 20 98 chr11 116372301 116372505 -32410967 + MER5A DNA MER1_type 1 188 -1 279 0 0 0 chr11 116373136 116373167 -32410305 + (A)n Simple_repeat Simple_repeat 1 31 0 198 179 0 0 chr11 116374158 116374197 -32409275 - L2 LINE L2 0 3313 3275 968 81 0 40 chr11 116374473 116374621 -32408851 + L1PA10 LINE L1 6027 6168 0 397 315 133 53 chr11 116375355 116376054 -32407418 - L1M2 LINE L1 -5622 1227 405 235 330 0 19 chr11 116376057 116376160 -32407312 + CT-rich Low_complexity Low_complexity 2 102 0 229 191 0 0 chr11 116377618 116377681 -32405791 + L1MC4 LINE L1 6641 6703 -1339 23 33 0 0 chr11 116377688 116377718 -32405754 + AT_rich Low_complexity Low_complexity 1 30 0 21 57 0 0 chr11 116377746 116377781 -32405691 + AT_rich Low_complexity Low_complexity 1 35 0 204 40 0 0 chr11 116379435 116379460 -32404012 + (CA)n Simple_repeat Simple_repeat 1 25 0 324 313 86 0 chr11 116380296 116380424 -32403048 - MIR SINE MIR -111 151 13 322 329 56 14 chr11 116380603 116380746 -32402726 + MIR3 SINE MIR 53 201 -7 25 51 0 0 chr11 116381206 116381245 -32402227 + AT_rich Low_complexity Low_complexity 1 39 0 2036 247 35 18 chr11 116381943 116382035 -32401437 - MER119 DNA MER1_type -6 577 488 2196 121 0 0 chr11 116382035 116382340 -32401132 + AluSx SINE Alu 1 305 -7 2036 247 35 18 chr11 116382340 116382810 -32400662 - MER119 DNA MER1_type -95 488 5 29 47 0 0 chr11 116383211 116383254 -32400218 + AT_rich Low_complexity Low_complexity 1 43 0 249 176 0 0 chr11 116384297 116384348 -32399124 + Alu SINE Alu 252 302 0 432 329 43 100 chr11 116386594 116387086 -32396386 - L2 LINE L2 0 3272 2809 237 272 97 44 chr11 116387117 116387231 -32396241 - L2 LINE L2 -609 2705 2586 266 290 93 37 chr11 116387244 116387351 -32396121 + MIR SINE MIR 41 153 -109 181 255 85 0 chr11 116387352 116387399 -32396073 - MIR SINE MIR -92 170 120 587 364 159 14 chr11 116387446 116387764 -32395708 - L2 LINE L2 -787 2527 2256 2249 202 36 24 chr11 116387764 116388263 -32395209 + MLT1D LTR MaLR 1 505 0 587 364 159 14 chr11 116388263 116388593 -32394879 - L2 LINE L2 -1058 2256 1785 28 0 0 0 chr11 116388620 116388648 -32394824 + AT_rich Low_complexity Low_complexity 1 28 0 270 100 0 0 chr11 116388690 116388723 -32394749 - MLT2B1 LTR ERVL -7 513 478 438 20 0 0 chr11 116388723 116388774 -32394698 + (CA)n Simple_repeat Simple_repeat 2 52 0 2572 175 50 13 chr11 116388828 116389286 -32394186 - MLT2B1 LTR ERVL -45 475 1 4384 121 6 3 chr11 116389368 116390030 -32393442 + L1PA16 LINE L1 5494 6157 -9 299 44 22 0 chr11 116390140 116390185 -32393287 + (TAAAAA)n Simple_repeat Simple_repeat 2 47 0 1991 157 12 14 chr11 116390267 116390611 -32392861 + MER2 DNA MER2_type 2 344 0 3115 187 49 75 chr11 116391177 116391418 -32392054 + L1MD3 LINE L1 6597 6843 -1143 2563 44 0 0 chr11 116391418 116391712 -32391760 + AluY SINE Alu 1 294 -17 3115 187 49 75 chr11 116391712 116392005 -32391467 + L1MD3 LINE L1 6843 7142 -844 355 86 0 248 chr11 116392005 116392110 -32391362 + MLT1F1 LTR MaLR 46 124 -443 3115 187 49 75 chr11 116392110 116392711 -32390761 + L1MD3 LINE L1 7142 7984 -2 1870 57 0 4 chr11 116393274 116393502 -32389970 - AluY SINE Alu -15 296 70 2505 228 35 29 chr11 116393739 116394432 -32389040 + L1ME2 LINE L1 5434 6130 -34 210 395 35 0 chr11 116394461 116394547 -32388925 + L2 LINE L2 3184 3272 0 24 53 0 0 chr11 116394547 116394585 -32388887 + AT_rich Low_complexity Low_complexity 1 38 0 957 53 0 0 chr11 116395048 116395162 -32388310 + AluYa5/8 SINE Alu 191 304 -7 235 287 0 35 chr11 116396984 116397071 -32386401 + CT-rich Low_complexity Low_complexity 4 87 0 3351 90 64 0 chr11 116397239 116397726 -32385746 + L1PA13 LINE L1 5645 6162 -1 1610 218 3 0 chr11 116397818 116398130 -32385342 + MER82 DNA MER2_type 2 314 -339 3272 131 67 9 chr11 116398136 116398671 -32384801 + LTR4 LTR ERV1 31 596 0 1419 240 62 6 chr11 116398677 116398998 -32384474 + MER82 DNA MER2_type 315 653 0 691 268 151 8 chr11 116398999 116399357 -32384115 + Charlie2 DNA MER1_type 2440 2848 -14 27 73 0 0 chr11 116399518 116399573 -32383899 + AT_rich Low_complexity Low_complexity 1 55 0 218 57 75 0 chr11 116399942 116399995 -32383477 + (TTTA)n Simple_repeat Simple_repeat 4 60 0 236 191 75 14 chr11 116400009 116400156 -32383316 + (TTATA)n Simple_repeat Simple_repeat 3 158 0 340 288 64 87 chr11 116401563 116401782 -32381690 - L3 LINE CR1 -273 1304 1091 457 305 141 14 chr11 116401829 116402042 -32381430 - MIR SINE MIR 0 262 23 262 259 0 25 chr11 116402102 116402183 -32381289 + HsTC2 DNA Tc2 1 79 -1819 180 0 0 0 chr11 116402359 116402379 -32381093 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1975 145 10 0 chr11 116402950 116403239 -32380233 + AluSx SINE Alu 1 292 -20 284 274 0 0 chr11 116403752 116403814 -32379658 - MIR SINE MIR -1 261 200 1065 175 4 32 chr11 116403886 116404132 -32379340 + L1MB3 LINE L1 5943 6181 -2 211 207 67 180 chr11 116404430 116404580 -32378892 - L3b LINE CR1 -85 1498 1366 505 340 159 16 chr11 116404769 116405090 -32378382 + L2 LINE L2 2905 3271 -1 580 302 66 67 chr11 116405488 116405589 -32377883 + L2 LINE L2 2686 2786 -527 2511 59 3 7 chr11 116405589 116405896 -32377576 + AluY SINE Alu 1 306 -5 580 302 66 67 chr11 116405896 116406418 -32377054 + L2 LINE L2 2786 3313 0 369 267 153 0 chr11 116406554 116406685 -32376787 + MIR SINE MIR 41 191 -71 3288 158 51 2 chr11 116407519 116408088 -32375384 + LTR26 LTR ERV1 1 597 -6 1985 120 77 37 chr11 116408088 116408438 -32375034 + THE1B LTR MaLR 1 364 0 9879 96 105 3 chr11 116408438 116409872 -32373600 + THE1B-int LTR MaLR 1 1580 0 2166 117 79 15 chr11 116409872 116410214 -32373258 + THE1B LTR MaLR 1 364 0 21 57 0 0 chr11 116410595 116410630 -32372842 + AT_rich Low_complexity Low_complexity 1 35 0 638 154 0 9 chr11 116410664 116410774 -32372698 + L1PB4 LINE L1 6035 6143 -13 256 292 100 0 chr11 116410884 116411004 -32372468 - L1ME LINE L1 -259 5862 5731 21 0 0 0 chr11 116411279 116411300 -32372172 + AT_rich Low_complexity Low_complexity 1 21 0 761 159 99 88 chr11 116411346 116411528 -32371944 - MLT1A2 LTR MaLR 0 374 191 432 263 18 0 chr11 116411591 116411705 -32371767 - MLT2B1 LTR ERVL -367 153 38 2079 228 22 35 chr11 116411711 116412251 -32371221 + L1PB2 LINE L1 3 535 -6328 1107 87 7 0 chr11 116412265 116412415 -32371057 + L1PB2 LINE L1 2383 2533 -4330 * 7553 161 31 38 chr11 116412398 116412681 -32370791 + L1PB2 LINE L1 4377 4660 -2202 2379 84 0 3 chr11 116412681 116412978 -32370494 + AluSc SINE Alu 1 296 -13 7553 161 31 38 chr11 116412978 116413265 -32370207 + L1PB2 LINE L1 4660 4948 -1914 943 190 0 0 chr11 116413265 116413428 -32370044 - FRAM SINE Alu -3 163 1 7553 161 31 38 chr11 116413428 116413448 -32370024 + L1PB2 LINE L1 4948 4967 -1895 1452 118 180 8 chr11 116413448 116413693 -32369779 - AluSg SINE Alu -12 288 2 7553 161 31 38 chr11 116413693 116414675 -32368797 + L1PB2 LINE L1 4967 5940 -922 3124 104 12 23 chr11 116414675 116415150 -32368322 + L1PB2 LINE L1 6390 6864 -3 1048 149 88 138 chr11 116415162 116415525 -32367947 + L1MC3 LINE L1 7441 7785 0 26 0 0 0 chr11 116415531 116415557 -32367915 + AT_rich Low_complexity Low_complexity 1 26 0 515 229 14 57 chr11 116415581 116415721 -32367751 - MLT1A2 LTR MaLR -240 134 1 803 103 0 8 chr11 116415731 116415848 -32367624 + ERVL-B1 LTR ERVL 5642 5757 -7 1433 240 81 42 chr11 116415848 116416328 -32367144 + MLT2B1 LTR ERVL 1 499 -21 405 0 0 0 chr11 116416839 116416884 -32366588 + (TG)n Simple_repeat Simple_repeat 2 46 0 3660 153 25 5 chr11 116416944 116417578 -32365894 + L1PB4 LINE L1 5497 6143 -13 1651 174 37 16 chr11 116418068 116418390 -32365082 + MSTB2 LTR MaLR 1 329 -128 684 177 8 39 chr11 116418560 116418690 -32364782 + MSTB2 LTR MaLR 304 429 -3 369 0 0 0 chr11 116418945 116418986 -32364486 + (CA)n Simple_repeat Simple_repeat 2 42 0 180 0 0 0 chr11 116418985 116419005 -32364467 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 662 274 38 80 chr11 116420056 116420434 -32363038 - L2 LINE L2 -8 3305 2872 873 291 37 65 chr11 116420434 116420925 -32362547 + L2 LINE L2 2270 2746 -568 337 311 132 8 chr11 116421183 116421654 -32361818 + L1ME LINE L1 5308 5808 -313 196 77 51 0 chr11 116421704 116421743 -32361729 + (TA)n Simple_repeat Simple_repeat 1 41 0 570 338 91 44 chr11 116422003 116422542 -32360930 + L2 LINE L2 2728 3292 -21 225 0 0 0 chr11 116422587 116422612 -32360860 + (A)n Simple_repeat Simple_repeat 1 25 0 217 236 35 121 chr11 116423412 116423586 -32359886 + MIR SINE MIR 98 256 -6 2376 102 0 3 chr11 116424135 116424448 -32359024 + AluSx SINE Alu 1 312 0 343 211 62 47 chr11 116425045 116425173 -32358299 - MER5A DNA MER1_type -14 175 46 * 501 311 20 14 chr11 116425058 116425206 -32358266 + MER5A DNA MER1_type 40 188 -1 2166 110 3 0 chr11 116425892 116426191 -32357281 - AluSx SINE Alu -12 300 1 362 101 64 0 chr11 116426666 116426775 -32356697 + (TA)n Simple_repeat Simple_repeat 1 116 0 21 36 0 0 chr11 116426783 116426811 -32356661 + AT_rich Low_complexity Low_complexity 1 28 0 189 147 0 0 chr11 116426937 116426971 -32356501 + (A)n Simple_repeat Simple_repeat 1 34 0 533 251 50 50 chr11 116427633 116427812 -32355660 - MIR SINE MIR -83 179 1 22 0 0 0 chr11 116428638 116428660 -32354812 + AT_rich Low_complexity Low_complexity 1 22 0 1084 134 12 12 chr11 116428712 116428883 -32354589 - AluSg/x SINE Alu -10 302 132 276 325 0 25 chr11 116429048 116429128 -32354344 + L2 LINE L2 3160 3237 -35 2608 65 0 0 chr11 116429246 116429552 -32353920 - AluSc SINE Alu -3 306 1 279 0 0 0 chr11 116430727 116430758 -32352714 + (A)n Simple_repeat Simple_repeat 1 31 0 34 24 0 0 chr11 116430792 116430833 -32352639 + AT_rich Low_complexity Low_complexity 1 41 0 2385 99 0 3 chr11 116431773 116432086 -32351386 + AluSx SINE Alu 1 312 0 287 315 56 0 chr11 116433459 116433567 -32349905 + MIR SINE MIR 89 202 -60 929 262 130 87 chr11 116433921 116434254 -32349218 - MLT1F1 LTR MaLR -10 557 191 2592 147 16 21 chr11 116434254 116434683 -32348789 + MSTC LTR MaLR 1 427 -1 929 262 130 87 chr11 116434683 116434851 -32348621 - MLT1F1 LTR MaLR -376 191 32 291 323 75 0 chr11 116436995 116437088 -32346384 + L2 LINE L2 3203 3302 -11 246 116 0 0 chr11 116437187 116437230 -32346242 - L1MB7 LINE L1 -9 6175 6133 2276 107 0 0 chr11 116437326 116437617 -32345855 - AluSg SINE Alu -19 291 1 216 295 197 33 chr11 116438317 116438500 -32344972 - MIR SINE MIR -3 259 47 978 290 131 22 chr11 116439127 116439579 -32343893 - LTR33 LTR ERVL 0 521 21 2185 109 0 22 chr11 116439655 116439968 -32343504 + AluSx SINE Alu 7 312 0 4385 220 21 19 chr11 116440025 116441159 -32342313 + L1ME LINE L1 3418 4553 -1593 5524 68 8 17 chr11 116441177 116441926 -32341546 + MER4E LTR ERV1 25 766 0 351 0 0 0 chr11 116442611 116442650 -32340822 + (TG)n Simple_repeat Simple_repeat 2 40 0 532 222 0 0 chr11 116442657 116442774 -32340698 + L1ME LINE L1 5697 5813 -353 21 57 0 0 chr11 116443029 116443064 -32340408 + AT_rich Low_complexity Low_complexity 1 35 0 2139 244 65 32 chr11 116443117 116443805 -32339667 - L1ME1 LINE L1 -69 6166 5456 878 233 62 45 chr11 116443804 116443954 -32339518 - L1MCb LINE L1 -5743 302 156 * 2038 176 40 21 chr11 116443954 116444375 -32339097 - MSTB1 LTR MaLR 0 432 4 878 233 62 45 chr11 116444375 116444516 -32338956 - L1MCb LINE L1 -5889 156 6 3480 236 59 32 chr11 116444551 116445542 -32337930 - L1ME1 LINE L1 -2642 3573 2552 1521 95 27 0 chr11 116445542 116445764 -32337708 - L1PA13 LINE L1 -5 6158 5931 3480 236 59 32 chr11 116445764 116446533 -32336939 - L1ME1 LINE L1 -3663 2552 1805 1876 140 34 42 chr11 116446535 116446913 -32336559 - THE1C LTR MaLR 0 375 1 7191 134 88 0 chr11 116446913 116448271 -32335201 - THE1C-int LTR MaLR 0 1651 1 1678 177 43 38 chr11 116448271 116448644 -32334828 - THE1C LTR MaLR 0 375 1 2781 269 100 46 chr11 116448644 116450145 -32333327 - L1ME1 LINE L1 -4588 1808 223 2317 107 3 3 chr11 116451389 116451699 -32331773 + AluSp SINE Alu 1 310 -3 243 313 112 8 chr11 116452751 116452925 -32330547 + MIR SINE MIR 30 226 -36 226 323 43 11 chr11 116452923 116453016 -32330456 + MIR SINE MIR 43 138 -70 * 2125 118 3 3 chr11 116453518 116453815 -32329657 + AluSx SINE Alu 1 297 -15 5101 24 0 2 chr11 116454588 116455184 -32328288 + L1PA4 LINE L1 5556 6150 -5 22 56 0 0 chr11 116455222 116455258 -32328214 + AT_rich Low_complexity Low_complexity 1 36 0 2298 105 0 3 chr11 116455523 116455827 -32327645 + AluSx SINE Alu 1 303 -9 4157 216 50 14 chr11 116455979 116457093 -32326379 + L1 LINE L1 2796 3950 -2196 14381 195 37 23 chr11 116457113 116459590 -32323882 + L1PB1 LINE L1 6 2447 -4420 263 49 24 0 chr11 116459590 116459631 -32323841 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 14381 195 37 23 chr11 116459631 116459907 -32323565 + L1PB1 LINE L1 2447 2718 -4149 2214 101 3 0 chr11 116459907 116460194 -32323278 - AluSx SINE Alu -24 288 1 14381 195 37 23 chr11 116460194 116462259 -32321213 + L1PB1 LINE L1 2718 4753 -2114 180 0 0 0 chr11 116462259 116462279 -32321193 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 14381 195 37 23 chr11 116462279 116462658 -32320814 + L1PB1 LINE L1 4753 5125 -1742 6548 63 29 1 chr11 116462658 116463717 -32319755 + L1PA7 LINE L1 5071 6154 0 14381 195 37 23 chr11 116463717 116464727 -32318745 + L1PB1 LINE L1 5125 6513 -354 533 15 15 0 chr11 116464727 116464793 -32318679 + (TG)n Simple_repeat Simple_repeat 1 67 0 14381 195 37 23 chr11 116464793 116465152 -32318320 + L1PB1 LINE L1 6513 6866 -1 2010 180 43 77 chr11 116465155 116465776 -32317696 + L1 LINE L1 3915 4514 -1632 385 253 11 0 chr11 116465790 116465885 -32317587 + L1ME1 LINE L1 3759 3854 -2292 24 0 0 0 chr11 116465900 116465924 -32317548 + AT_rich Low_complexity Low_complexity 1 24 0 4311 222 68 47 chr11 116465935 116467412 -32316060 + L1ME1 LINE L1 3840 5347 -799 3401 270 26 27 chr11 116467411 116469615 -32313857 + L1PBa LINE L1 7 1639 -5224 * 2165 199 65 21 chr11 116469621 116469741 -32313731 + L1PB3 LINE L1 709 822 -5389 2261 122 105 13 chr11 116469741 116470133 -32313339 - MSTA LTR MaLR 0 428 1 2165 199 65 21 chr11 116470133 116475047 -32308425 + L1PB3 LINE L1 822 6211 0 2882 237 37 32 chr11 116475052 116475867 -32307605 + L1ME1 LINE L1 5327 6145 -21 23 0 0 0 chr11 116475957 116475980 -32307492 + AT_rich Low_complexity Low_complexity 1 23 0 303 264 120 64 chr11 116476259 116476509 -32306963 + L1M4 LINE L1 2149 2412 -3734 308 321 45 30 chr11 116476705 116476839 -32306633 + MER5A DNA MER1_type 32 167 -22 428 298 103 38 chr11 116477112 116477465 -32306007 + L1M4 LINE L1 2889 3264 -2882 352 271 138 44 chr11 116477495 116477676 -32305796 + L1ME1 LINE L1 5964 6161 -5 854 273 91 11 chr11 116478240 116478504 -32304968 + L2 LINE L2 2478 2762 -552 828 250 104 0 chr11 116478516 116478736 -32304736 + MLT1F1 LTR MaLR 325 567 0 5972 101 18 1 chr11 116479422 116481162 -32302310 + L1PA13 LINE L1 4397 6163 0 203 189 38 19 chr11 116482405 116482458 -32301014 + L2 LINE L2 3030 3083 -189 1722 153 11 0 chr11 116482468 116482729 -32300743 - MER66B LTR ERV1 0 486 223 1971 200 28 13 chr11 116483278 116483668 -32299804 + MSTD LTR MaLR 1 396 0 369 43 0 0 chr11 116483958 116484005 -32299467 + (CA)n Simple_repeat Simple_repeat 1 47 0 196 237 17 34 chr11 116484467 116484526 -32298946 - L2 LINE L2 -1313 2001 1944 20603 163 45 23 chr11 116485754 116489354 -32294118 + L1M1 LINE L1 14 3756 -3809 459 0 0 0 chr11 116489354 116489405 -32294067 + (CA)n Simple_repeat Simple_repeat 2 52 0 20603 163 45 23 chr11 116489405 116490718 -32292754 + L1M1 LINE L1 3756 5038 -2527 2488 116 5 33 chr11 116490718 116491133 -32292339 + L1MA3 LINE L1 5894 6305 0 2116 119 17 7 chr11 116491504 116491797 -32291675 + AluSg SINE Alu 2 297 -13 389 173 136 12 chr11 116491814 116491895 -32291577 + MER5A DNA MER1_type 13 103 -86 815 286 54 11 chr11 116491948 116492224 -32291248 - LTR33 LTR ERVL -177 344 57 2766 13 0 0 chr11 116492919 116493221 -32290251 - AluY SINE Alu -8 303 2 285 325 83 57 chr11 116493594 116494153 -32289319 + L2 LINE L2 2461 3034 -238 2248 87 0 37 chr11 116495411 116495733 -32287739 - AluSx SINE Alu -1 311 2 875 280 39 13 chr11 116495883 116496269 -32287203 - L1ME4a LINE L1 -230 5891 5496 305 279 265 31 chr11 116496533 116496827 -32286645 - L3 LINE CR1 -71 1506 1144 280 306 25 141 chr11 116496850 116497092 -32286380 + L2 LINE L2 2972 3185 -87 290 266 0 25 chr11 116497763 116497842 -32285630 + Charlie8 DNA MER1_type 1350 1416 -1001 22 0 0 0 chr11 116497972 116497994 -32285478 + AT_rich Low_complexity Low_complexity 1 22 0 424 360 77 27 chr11 116498129 116498726 -32284746 - L2 LINE L2 -955 2359 1733 392 345 89 5 chr11 116499518 116499709 -32283763 - MIR SINE MIR -7 255 49 1400 54 0 59 chr11 116500541 116500744 -32282728 + MER107 DNA MER1_type 6 196 -1 1852 104 22 22 chr11 116501023 116501292 -32282180 + AluSc SINE Alu 33 301 -8 2657 139 20 36 chr11 116501486 116501831 -32281641 + L1MC3 LINE L1 6987 7323 -462 2262 99 10 0 chr11 116501831 116502124 -32281348 + AluSq SINE Alu 5 300 -13 2657 139 20 36 chr11 116502124 116502274 -32281198 + L1MC3 LINE L1 7323 7474 -311 1474 219 98 6 chr11 116502276 116502604 -32280868 + MLT1A1 LTR MaLR 1 358 -7 1494 159 3 95 chr11 116502604 116502950 -32280522 + L1MC3 LINE L1 7471 7784 -1 417 248 113 107 chr11 116503040 116503307 -32280165 + MIR SINE MIR 2 239 -2 580 283 58 17 chr11 116504173 116504396 -32279076 + MIR SINE MIR 6 248 -14 207 325 0 24 chr11 116507603 116507686 -32275786 + CT-rich Low_complexity Low_complexity 1 81 0 194 105 26 0 chr11 116508457 116508495 -32274977 + (CA)n Simple_repeat Simple_repeat 2 40 0 5682 139 30 43 chr11 116508857 116509943 -32273529 - MER11C LTR ERVK 0 1071 1 207 0 0 0 chr11 116510128 116510151 -32273321 + (A)n Simple_repeat Simple_repeat 1 23 0 213 39 0 0 chr11 116510151 116510177 -32273295 + (TA)n Simple_repeat Simple_repeat 2 27 0 699 201 6 169 chr11 116510408 116510608 -32272864 + MIR SINE MIR 1 232 -30 2103 91 22 0 chr11 116510608 116510923 -32272549 + AluSx SINE Alu 1 321 0 699 201 6 169 chr11 116510923 116510943 -32272529 + MIR SINE MIR 232 161 -101 2535 52 0 7 chr11 116510943 116511249 -32272223 + AluY SINE Alu 1 304 -7 699 201 6 169 chr11 116511249 116511338 -32272134 + MIR SINE MIR 160 262 0 925 139 0 2 chr11 116511559 116511796 -32271676 + AluJ SINE Alu 14 307 -5 2144 111 0 0 chr11 116511921 116512201 -32271271 + AluSx SINE Alu 1 280 -32 360 0 0 0 chr11 116512201 116512241 -32271231 + (TAAA)n Simple_repeat Simple_repeat 4 43 0 2171 95 7 3 chr11 116512899 116513195 -32270277 + AluSx SINE Alu 1 297 -15 1239 233 27 27 chr11 116513309 116513601 -32269871 - AluJo SINE Alu -10 292 1 210 277 119 38 chr11 116514012 116514171 -32269301 - L2 LINE L2 -343 2971 2800 1449 177 35 0 chr11 116514199 116514481 -32268991 + L1MB3 LINE L1 5890 6181 -2 1664 199 55 6 chr11 116514635 116514961 -32268511 + MLT1A1 LTR MaLR 1 342 -23 378 281 222 6 chr11 116515289 116515456 -32268016 + MIR SINE MIR 58 260 -2 398 329 56 7 chr11 116515461 116515604 -32267868 - L2 LINE L2 -603 2711 2562 2226 85 0 0 chr11 116515607 116515888 -32267584 + AluSx SINE Alu 1 281 -31 222 37 0 0 chr11 116515891 116515918 -32267554 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2053 122 3 30 chr11 116516472 116516776 -32266696 + AluSx SINE Alu 1 296 -16 994 284 65 29 chr11 116516840 116517288 -32266184 - LTR16B LTR ERVL 0 464 1 840 188 0 0 chr11 116518742 116518875 -32264597 + FLAM_A SINE Alu 1 133 0 2338 106 0 3 chr11 116518882 116519194 -32264278 + AluSq SINE Alu 1 311 -2 3121 132 45 0 chr11 116519570 116520063 -32263409 - MLT2B2 LTR ERVL 0 515 1 330 363 138 27 chr11 116520277 116520610 -32262862 + L2 LINE L2 2899 3268 -4 2035 102 11 97 chr11 116521255 116521762 -32261710 - Tigger2 DNA MER2_type 0 2718 1 228 260 45 83 chr11 116521771 116522013 -32261459 - L1MEc LINE L1 -2573 3642 3410 246 156 0 0 chr11 116522184 116522229 -32261243 + CT-rich Low_complexity Low_complexity 4 48 0 1851 216 111 97 chr11 116522239 116523368 -32260104 - L1MC5 LINE L1 -175 7786 6643 191 61 30 0 chr11 116523431 116523464 -32260008 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 2168 104 0 3 chr11 116523467 116523756 -32259716 - AluSx SINE Alu -24 288 1 1044 298 104 57 chr11 116523775 116524924 -32258548 - L1MEc LINE L1 -2978 3237 2081 351 362 8 4 chr11 116525078 116525313 -32258159 - HAL1 LINE L1 -839 1668 1433 354 275 58 19 chr11 116525337 116525544 -32257928 - L1MEc LINE L1 -5014 1191 977 320 87 0 0 chr11 116526006 116526052 -32257420 - MADE1 DNA Mariner 0 80 35 1730 135 43 21 chr11 116526080 116526362 -32257110 + AluSx SINE Alu 1 288 -24 395 282 96 11 chr11 116526462 116526650 -32256822 - LTR33A LTR ERVL -45 478 275 585 201 50 38 chr11 116526715 116526874 -32256598 - LTR33A LTR ERVL -362 161 1 2346 161 71 4 chr11 116527154 116527632 -32255840 - L1MB7 LINE L1 0 6184 5675 6478 227 51 27 chr11 116527656 116528754 -32254718 - L1M4c LINE L1 -4544 2100 895 1571 204 65 0 chr11 116528754 116529077 -32254395 + MER7A DNA MER2_type 4 345 -1 6478 227 51 27 chr11 116529077 116529979 -32253493 - L1M4c LINE L1 -5749 895 16 546 278 22 0 chr11 116530351 116530531 -32252941 + L1M4 LINE L1 4495 4678 -1468 347 238 48 0 chr11 116530712 116530817 -32252655 - L1M4 LINE L1 -1541 4605 4496 286 305 38 0 chr11 116531394 116531499 -32251973 - MLT1H1 LTR MaLR 0 595 487 339 314 55 50 chr11 116531514 116531734 -32251738 - MLT1H1 LTR MaLR -184 371 151 452 311 81 73 chr11 116532553 116532910 -32250562 + MLT1K LTR MaLR 57 416 -172 1241 222 28 74 chr11 116533008 116533400 -32250072 - MLT1A2 LTR MaLR 0 374 1 4378 173 39 32 chr11 116533894 116534914 -32248558 + MER65B-int LTR ERV1 1468 2494 -2377 1365 178 74 61 chr11 116535018 116535646 -32247826 + MER65B-int LTR ERV1 1542 2350 -4408 376 182 57 57 chr11 116535913 116536001 -32247471 + MER65B-int LTR ERV1 1424 1511 -2680 2649 184 101 84 chr11 116536053 116536411 -32247061 + MER65B-int LTR ERV1 3493 3843 -2488 1714 138 90 36 chr11 116536411 116536767 -32246705 - THE1C LTR MaLR 0 375 1 2649 184 101 84 chr11 116536767 116537617 -32245855 + MER65B-int LTR ERV1 3843 4758 -1573 1770 187 14 0 chr11 116537617 116537911 -32245561 + AluJb SINE Alu 1 298 -14 2649 184 101 84 chr11 116537911 116538263 -32245209 + MER65B-int LTR ERV1 4758 5103 -1228 301 228 13 51 chr11 116538270 116538349 -32245123 + MER65B-int LTR ERV1 3884 3959 -977 269 93 148 19 chr11 116538372 116538426 -32245046 + MER65B-int LTR ERV1 5337 5397 -934 1771 256 73 2 chr11 116538434 116538859 -32244613 + MER65B-int LTR ERV1 3606 4060 -811 * 1786 249 34 19 chr11 116538842 116539319 -32244153 + MER65B-int LTR ERV1 4388 4871 0 284 29 0 0 chr11 116539319 116539353 -32244119 + MER65B LTR ERV1 1 34 -497 2302 126 62 21 chr11 116539958 116540346 -32243126 + MER65A LTR ERV1 42 445 0 13317 168 39 49 chr11 116540349 116543028 -32240444 + LTR49-int LTR ERV1 1416 4067 -124 5814 168 44 10 chr11 116543149 116545238 -32238234 + L1MA7 LINE L1 4128 6285 -6 22 35 0 0 chr11 116545290 116545319 -32238153 + AT_rich Low_complexity Low_complexity 1 29 0 752 191 89 90 chr11 116545679 116546022 -32237450 - L1MC5 LINE L1 -776 7185 6873 647 285 24 9 chr11 116546452 116546710 -32236762 - L1M4 LINE L1 -636 5603 5339 566 136 58 10 chr11 116546772 116546875 -32236597 + Tigger5 DNA MER2_type 2215 2322 -1 569 254 124 4 chr11 116546883 116547158 -32236314 - L1M4 LINE L1 -918 5297 4990 2331 263 63 28 chr11 116547200 116548196 -32235276 - L1M4 LINE L1 -1832 4383 3353 1396 244 111 31 chr11 116548216 116548645 -32234827 - L1M4 LINE L1 -2916 3299 2906 2258 105 0 20 chr11 116548645 116548950 -32234522 + AluSx SINE Alu 1 299 -13 1396 244 111 31 chr11 116548950 116549258 -32234214 - L1M4 LINE L1 -3309 2906 2503 1620 204 75 9 chr11 116549301 116549619 -32233853 - MER1B DNA MER1_type 0 339 1 662 272 24 12 chr11 116549637 116549891 -32233581 - L1M4 LINE L1 -3761 2454 2198 1307 281 87 56 chr11 116549898 116550638 -32232834 - L1ME LINE L1 -4249 2147 1431 1611 197 0 23 chr11 116550638 116550937 -32232535 - AluJb SINE Alu -15 297 6 5354 118 19 1 chr11 116550946 116552371 -32231101 - L1PA13 LINE L1 -4 6159 4690 1307 281 87 56 chr11 116552371 116553010 -32230462 - L1ME LINE L1 -4972 1424 667 442 326 82 33 chr11 116553335 116553700 -32229772 - L1ME LINE L1 -5977 419 37 336 287 164 75 chr11 116553775 116554190 -32229282 - HAL1b LINE L1 -567 781 330 26 30 0 0 chr11 116554585 116554618 -32228854 + AT_rich Low_complexity Low_complexity 1 33 0 31 26 0 0 chr11 116556414 116556452 -32227020 + AT_rich Low_complexity Low_complexity 1 38 0 261 283 47 47 chr11 116556496 116556602 -32226870 + MIR SINE MIR 110 215 -47 347 360 65 0 chr11 116557076 116557229 -32226243 - L2 LINE L2 -8 3264 3102 524 293 88 25 chr11 116557356 116557595 -32225877 + MIR SINE MIR 9 262 0 308 300 23 15 chr11 116557932 116558062 -32225410 - L1ME4a LINE L1 -6 6115 5985 370 252 0 43 chr11 116560355 116560494 -32222978 - L1MC4a LINE L1 -1980 5828 5696 1801 148 7 3 chr11 116560829 116561113 -32222359 + AluSx SINE Alu 1 285 -27 30 0 0 0 chr11 116561515 116561545 -32221927 + AT_rich Low_complexity Low_complexity 1 30 0 909 83 31 94 chr11 116562459 116562651 -32220821 + L1MB2 LINE L1 5990 6169 -2 279 350 102 11 chr11 116563090 116563267 -32220205 - MIR SINE MIR -50 212 20 1787 147 155 11 chr11 116563400 116563774 -32219698 - MSTA LTR MaLR 0 428 1 4842 120 3 7 chr11 116564075 116564452 -32219020 + L1PA16 LINE L1 5418 5792 -374 321 26 0 0 chr11 116564452 116564490 -32218982 + (CA)n Simple_repeat Simple_repeat 2 39 0 4842 120 3 7 chr11 116564490 116564855 -32218617 + L1PA16 LINE L1 5792 6157 -9 294 273 124 25 chr11 116565338 116565459 -32218013 + MIR3 SINE MIR 55 187 -21 1983 107 66 3 chr11 116566000 116566289 -32217183 + AluSx SINE Alu 1 307 -5 296 320 72 36 chr11 116566296 116566490 -32216982 + MIR SINE MIR 29 229 -33 * 650 275 122 13 chr11 116566449 116566678 -32216794 - MIR SINE MIR -3 259 6 193 262 0 0 chr11 116566695 116566737 -32216735 + L2 LINE L2 3210 3251 -21 2389 143 56 14 chr11 116568272 116568756 -32214716 - L1MA9 LINE L1 -2 6310 5807 797 134 52 12 chr11 116568762 116568934 -32214538 - L1MA8 LINE L1 -7 7703 7525 10519 188 31 26 chr11 116568996 116569829 -32213643 - L1MA8 LINE L1 -185 7525 6698 8000 140 12 2 chr11 116569829 116571118 -32212354 + HSMAR2 DNA Mariner 1 1301 -1 10519 188 31 26 chr11 116571118 116573427 -32210045 - L1MA8 LINE L1 -1012 6698 4350 2475 210 11 21 chr11 116573427 116573947 -32209525 - MLT2B2 LTR ERVL 0 515 1 10519 188 31 26 chr11 116573947 116574194 -32209278 - L1MA8 LINE L1 -3360 4350 4106 2809 258 36 17 chr11 116574194 116575803 -32207669 - L1MA8 LINE L1 -4074 3491 2014 576 66 0 0 chr11 116577006 116577082 -32206390 - L1P LINE L1 -1553 4593 4518 7545 36 0 1 chr11 116577082 116578590 -32204882 + L1PA5 LINE L1 4637 6145 -9 405 0 0 0 chr11 116578590 116578635 -32204837 + (TA)n Simple_repeat Simple_repeat 1 45 0 1606 179 25 28 chr11 116580068 116580393 -32203079 - L1PA16 LINE L1 -9 6157 5834 314 243 45 9 chr11 116581739 116581850 -32201622 - MER20B DNA MER1_type -4 779 665 329 271 117 53 chr11 116581900 116582088 -32201384 - MER20B DNA MER1_type -582 201 2 2457 78 0 0 chr11 116582213 116582520 -32200952 - AluY SINE Alu -2 309 3 196 331 106 35 chr11 116582975 116583117 -32200355 - L2 LINE L2 -1 3312 3161 764 245 15 59 chr11 116583172 116583376 -32200096 + MIR SINE MIR 21 215 -47 294 280 43 0 chr11 116583618 116583711 -32199761 + L2 LINE L2 3215 3311 -2 288 254 146 37 chr11 116583717 116584012 -32199460 + L1ME4a LINE L1 5792 6118 -3 805 290 31 4 chr11 116585513 116585768 -32197704 - MIR SINE MIR 0 262 1 200 426 78 0 chr11 116586634 116586749 -32196723 + MIR SINE MIR 37 160 -102 201 147 0 0 chr11 116586757 116586791 -32196681 + (GAA)n Simple_repeat Simple_repeat 2 35 0 2213 128 122 8 chr11 116587016 116587400 -32196072 - MSTA LTR MaLR 0 428 1 8898 159 49 9 chr11 116587400 116588988 -32194484 - MSTA-int LTR MaLR 0 1651 1 2027 146 140 8 chr11 116588988 116589366 -32194106 - MSTA LTR MaLR 0 428 1 181 262 0 0 chr11 116589441 116589483 -32193989 + L2 LINE L2 3271 3312 -1 2153 133 0 0 chr11 116589520 116589822 -32193650 + AluSq SINE Alu 1 302 -11 1926 164 35 15 chr11 116590122 116590463 -32193009 - MER7A DNA MER2_type 0 346 1 329 365 19 19 chr11 116590559 116590715 -32192757 - MIR3 SINE MIR -3 205 50 191 191 0 43 chr11 116590725 116590772 -32192700 - MIR SINE MIR 0 262 218 961 175 87 9 chr11 116590918 116591064 -32192408 - L1MA9 LINE L1 0 6312 6140 369 0 0 0 chr11 116591064 116591105 -32192367 + (TG)n Simple_repeat Simple_repeat 2 42 0 961 175 87 9 chr11 116591105 116591187 -32192285 - L1MA9 LINE L1 -172 6140 6066 331 254 110 44 chr11 116592101 116592329 -32191143 - HAL1 LINE L1 -6 2501 2259 1806 237 132 31 chr11 116592371 116593301 -32190171 - HAL1 LINE L1 -354 2153 1130 313 319 50 38 chr11 116593921 116594081 -32189391 - HAL1 LINE L1 -2191 316 155 674 285 31 50 chr11 116594338 116594657 -32188815 + LTR16C LTR ERVL 50 362 -129 485 300 74 5 chr11 116595365 116595555 -32187917 - MER20B DNA MER1_type -580 203 1 2043 150 6 10 chr11 116595707 116596020 -32187452 + AluSx SINE Alu 1 312 0 272 27 27 0 chr11 116596063 116596100 -32187372 + (TC)n Simple_repeat Simple_repeat 1 38 0 418 319 36 6 chr11 116596212 116596378 -32187094 + MLT1L LTR MaLR 445 615 0 482 274 144 30 chr11 116596658 116596928 -32186544 - MLT1J LTR MaLR -4 507 207 269 257 56 95 chr11 116596938 116597117 -32186355 + L1MA9 LINE L1 6047 6218 -94 312 70 0 0 chr11 116597134 116597177 -32186295 + (CA)n Simple_repeat Simple_repeat 2 44 0 548 323 10 10 chr11 116597237 116597438 -32186034 - MLT1J LTR MaLR -302 209 9 373 251 49 98 chr11 116597445 116597608 -32185864 + L2 LINE L2 2957 3111 -161 312 70 0 0 chr11 116597638 116597681 -32185791 + (CA)n Simple_repeat Simple_repeat 1 43 0 180 315 55 0 chr11 116597682 116597755 -32185717 - MIR SINE MIR -157 105 29 2183 100 0 32 chr11 116598369 116598680 -32184792 + AluSq SINE Alu 1 301 -12 630 283 101 15 chr11 116599331 116599737 -32183735 - LTR37B LTR ERV1 0 468 28 1876 212 31 66 chr11 116599737 116599979 -32183493 - MER90 LTR ERV1 0 575 326 1810 153 3 35 chr11 116599979 116600292 -32183180 + AluSx SINE Alu 1 303 -9 1876 212 31 66 chr11 116600292 116600638 -32182834 - MER90 LTR ERV1 -249 326 8 276 30 0 0 chr11 116600787 116600820 -32182652 + (CAT)n Simple_repeat Simple_repeat 3 35 0 616 121 0 10 chr11 116602007 116602106 -32181366 + MER4A LTR ERV1 1 98 -566 1753 116 159 68 chr11 116602106 116602476 -32180996 + MER4A LTR ERV1 261 664 0 218 214 0 0 chr11 116602727 116602769 -32180703 + (CATATA)n Simple_repeat Simple_repeat 6 47 0 1053 285 119 28 chr11 116602808 116603302 -32180170 + MLT1G LTR MaLR 49 587 -3 1268 102 112 5 chr11 116603854 116604050 -32179422 + AluSg/x SINE Alu 94 310 -2 850 118 8 0 chr11 116604054 116604173 -32179299 + AluSq/x SINE Alu 15 134 -178 228 222 5 0 chr11 116604190 116604249 -32179223 - MIR SINE MIR -47 161 101 365 185 0 0 chr11 116604456 116604521 -32178951 + Alu SINE Alu 234 298 -4 336 265 41 20 chr11 116604613 116604711 -32178761 - MIR SINE MIR -158 104 5 341 219 37 0 chr11 116604832 116604914 -32178558 + MIR SINE MIR 4 88 -174 545 209 104 22 chr11 116604915 116605097 -32178375 - MLT1F LTR MaLR 0 542 346 237 235 25 49 chr11 116605084 116605165 -32178307 - MLT1F LTR MaLR -355 194 116 * 550 276 40 17 chr11 116605195 116605369 -32178103 + MIR SINE MIR 85 262 0 321 318 56 52 chr11 116606601 116606834 -32176638 - MLT1K LTR MaLR -165 423 190 1080 103 0 0 chr11 116607754 116607909 -32175563 - L1MA4 LINE L1 -2 6298 6144 225 65 0 0 chr11 116608024 116608055 -32175417 + (CA)n Simple_repeat Simple_repeat 1 31 0 2580 48 0 0 chr11 116608497 116608790 -32174682 - AluY SINE Alu -18 293 1 1115 65 0 0 chr11 116610404 116610542 -32172930 + AluSp/q SINE Alu 174 311 -2 180 0 0 0 chr11 116610812 116610832 -32172640 + (TC)n Simple_repeat Simple_repeat 1 20 0 2033 114 0 18 chr11 116610976 116611256 -32172216 + AluSx SINE Alu 1 275 -37 303 28 0 0 chr11 116611260 116611296 -32172176 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 573 338 89 19 chr11 116612029 116612559 -32170913 - L2 LINE L2 -94 3219 2645 429 150 0 47 chr11 116614097 116614441 -32169031 + (TA)n Simple_repeat Simple_repeat 1 327 0 3369 57 2 2 chr11 116614441 116614845 -32168627 - MLT2A1 LTR ERVL -40 404 1 7540 54 21 13 chr11 116614845 116615783 -32167689 - HERVL-A1-A1 LTR ERVL 0 5654 4709 * 36586 68 6 0 chr11 116615780 116620279 -32163193 - HERVL-A1-A1 LTR ERVL -1131 4523 1 3530 72 5 5 chr11 116620279 116620723 -32162749 - MLT2A1 LTR ERVL 0 444 1 263 332 86 65 chr11 116620727 116620912 -32162560 + L2 LINE L2 2263 2443 -871 2398 94 47 44 chr11 116620912 116621275 -32162197 + THE1B LTR MaLR 1 364 0 263 332 86 65 chr11 116621275 116621670 -32161802 + L2 LINE L2 2443 2855 -459 201 404 48 6 chr11 116621703 116621869 -32161603 + L2 LINE L2 2905 3077 -195 224 300 0 0 chr11 116622432 116622482 -32160990 + L2 LINE L2 3137 3186 -86 2326 130 122 8 chr11 116623551 116623935 -32159537 - MSTA LTR MaLR 0 428 1 2201 127 3 0 chr11 116624129 116624437 -32159035 + AluSq SINE Alu 3 311 -2 213 94 0 0 chr11 116625088 116625120 -32158352 + (TG)n Simple_repeat Simple_repeat 1 32 0 2755 23 0 7 chr11 116625896 116626205 -32157267 - AluY SINE Alu -4 307 1 593 150 268 8 chr11 116626621 116626748 -32156724 - AluSg/x SINE Alu -19 291 132 2415 78 0 13 chr11 116626749 116627055 -32156417 - AluSq SINE Alu -11 302 1 1747 169 10 29 chr11 116627246 116627554 -32155918 - AluJo SINE Alu -10 302 1 536 197 109 0 chr11 116627584 116627721 -32155751 + MER103 DNA DNA 13 164 -2 2124 113 13 7 chr11 116627748 116628050 -32155422 + AluSx SINE Alu 6 309 -3 1070 183 24 123 chr11 116628081 116628415 -32155057 + MLT1A1 LTR MaLR 1 301 -64 1076 97 0 26 chr11 116628520 116628674 -32154798 + AluSg/x SINE Alu 154 303 -9 825 152 86 86 chr11 116629380 116629553 -32153919 + MER20 DNA MER1_type 1 176 -43 2106 119 27 0 chr11 116629553 116629846 -32153626 + AluSq SINE Alu 1 301 -12 825 152 86 86 chr11 116629846 116629882 -32153590 + MER20 DNA MER1_type 175 210 -9 949 176 111 35 chr11 116629884 116629999 -32153473 + AluSq SINE Alu 5 110 -203 2280 80 7 7 chr11 116629999 116630323 -32153149 + AluSp SINE Alu 1 324 0 949 176 111 35 chr11 116630323 116630404 -32153068 + AluSq SINE Alu 110 218 -95 1004 94 13 81 chr11 116630926 116631160 -32152312 - AluSg/x SINE Alu -30 282 65 1976 150 0 3 chr11 116632144 116632444 -32151028 + AluSx SINE Alu 1 299 -13 2265 89 6 43 chr11 116632552 116632876 -32150596 - AluSx SINE Alu 0 312 1 360 151 0 0 chr11 116632876 116632929 -32150543 - MSTC LTR MaLR -375 53 1 1744 166 115 95 chr11 116632960 116633248 -32150224 - L1MC5 LINE L1 -722 7239 6958 2184 111 3 0 chr11 116633248 116633545 -32149927 - AluSg SINE Alu -12 298 1 1744 166 115 95 chr11 116633545 116633777 -32149695 - L1MC5 LINE L1 -1003 6958 6724 1964 143 7 7 chr11 116633777 116633936 -32149536 - AluSx SINE Alu -18 294 133 2299 94 0 3 chr11 116633936 116634234 -32149238 - AluSx SINE Alu -15 297 1 1964 143 7 7 chr11 116634234 116634368 -32149104 - AluSx SINE Alu -178 134 1 1744 166 115 95 chr11 116634368 116634521 -32148951 - L1MC5 LINE L1 -1237 6724 6576 229 256 22 11 chr11 116634617 116634707 -32148765 + (TA)n Simple_repeat Simple_repeat 2 92 0 316 271 162 62 chr11 116634752 116635091 -32148381 - L1MC4a LINE L1 -1336 6472 6100 2072 126 33 0 chr11 116635157 116635459 -32148013 + AluSx SINE Alu 1 312 0 886 133 71 61 chr11 116636207 116636285 -32147187 + L1PB1 LINE L1 5951 6027 -124 2243 81 0 10 chr11 116636285 116636581 -32146891 + AluSc SINE Alu 1 293 -16 886 133 71 61 chr11 116636581 116636698 -32146774 + L1PB1 LINE L1 6027 6148 -3 21 36 0 0 chr11 116636795 116636823 -32146649 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr11 116637080 116637108 -32146364 + AT_rich Low_complexity Low_complexity 1 28 0 2189 102 7 3 chr11 116637382 116637676 -32145796 + AluSx SINE Alu 1 295 -17 2207 104 0 7 chr11 116637790 116638087 -32145385 + AluSx SINE Alu 1 295 -17 1421 205 15 22 chr11 116638219 116638350 -32145122 + AluJb SINE Alu 3 133 -179 2372 95 10 0 chr11 116638350 116638645 -32144827 + AluSp SINE Alu 1 298 -15 1421 205 15 22 chr11 116638645 116638781 -32144691 + AluJb SINE Alu 133 268 -44 1452 143 9 9 chr11 116638872 116639096 -32144376 - AluJb SINE Alu -30 282 59 440 188 5 97 chr11 116639146 116639203 -32144269 + MLT1I LTR MaLR 298 313 -96 1859 171 11 0 chr11 116639203 116639490 -32143982 - AluJo SINE Alu -22 290 1 440 188 5 97 chr11 116639490 116639579 -32143893 + MLT1I LTR MaLR 313 409 0 250 286 50 36 chr11 116639580 116639720 -32143752 + MIR SINE MIR 117 258 -4 193 319 11 33 chr11 116639723 116639814 -32143658 - MIR SINE MIR -148 114 26 1083 220 44 4 chr11 116640398 116640625 -32142847 - MLT1A1 LTR MaLR 0 365 130 2194 92 7 3 chr11 116640884 116641187 -32142285 + AluSp SINE Alu 1 304 0 205 316 32 32 chr11 116641805 116641900 -32141572 + MIR SINE MIR 32 126 -82 2328 109 0 0 chr11 116641901 116642213 -32141259 - AluSx SINE Alu 0 312 1 709 214 69 12 chr11 116642253 116642426 -32141046 - L1M4 LINE L1 -1187 4959 4777 1056 239 40 55 chr11 116642427 116642754 -32140718 - PABL_B LTR ERV1 0 667 346 469 295 55 20 chr11 116642760 116642960 -32140512 - PABL_B LTR ERV1 -460 207 1 34 0 0 0 chr11 116643001 116643035 -32140437 + AT_rich Low_complexity Low_complexity 1 34 0 259 204 19 111 chr11 116643035 116643065 -32140407 - L1MA6 LINE L1 -25 6275 6246 1393 138 0 0 chr11 116643065 116643268 -32140204 - L1PB4 LINE L1 -26 6130 5928 628 130 0 0 chr11 116643705 116643797 -32139675 - AluJ/FLAM SINE Alu -210 102 11 2342 88 7 0 chr11 116643805 116644127 -32139345 - AluSp SINE Alu 0 324 1 2292 80 0 67 chr11 116644227 116644554 -32138918 - AluY SINE Alu -6 305 1 2804 140 19 20 chr11 116644817 116644960 -32138512 - MER50 LTR ERV1 -28 706 564 1853 132 10 45 chr11 116644960 116645270 -32138202 + AluSx SINE Alu 1 299 -13 2804 140 19 20 chr11 116645270 116645787 -32137685 - MER50 LTR ERV1 -170 564 1 396 164 78 43 chr11 116645812 116645928 -32137544 + Charlie5 DNA MER1_type 4 90 -2522 2229 93 7 7 chr11 116646364 116646666 -32136806 + AluSx SINE Alu 1 302 -10 1617 159 7 51 chr11 116646915 116647243 -32136229 - AluJo SINE Alu 0 315 1 336 274 44 9 chr11 116647288 116647401 -32136071 - MER5B DNA MER1_type -58 120 4 261 313 25 0 chr11 116647457 116647537 -32135935 + MIR3 SINE MIR 91 172 -36 1944 139 33 33 chr11 116647602 116647917 -32135555 + MER21-int LTR ERV1 3144 3461 -730 4556 102 45 19 chr11 116647917 116648425 -32135047 - LTR8 LTR ERV1 0 691 160 2102 131 3 7 chr11 116648425 116648730 -32134742 - AluSx SINE Alu -8 304 1 4556 102 45 19 chr11 116648730 116648895 -32134577 - LTR8 LTR ERV1 -531 160 1 1944 139 33 33 chr11 116648895 116648911 -32134561 + MER21-int LTR ERV1 3460 3475 -716 2366 85 0 3 chr11 116648915 116649210 -32134262 - AluY SINE Alu -17 294 1 2158 112 0 29 chr11 116649259 116649571 -32133901 - AluY SINE Alu 0 311 9 2057 143 13 0 chr11 116649590 116649768 -32133704 - AluSx SINE Alu 0 312 127 2065 98 0 11 chr11 116649768 116650042 -32133430 - AluSc SINE Alu -6 303 33 2057 143 13 0 chr11 116650042 116650170 -32133302 - AluSx SINE Alu -185 127 2 2382 81 7 3 chr11 116650195 116650492 -32132980 - AluY SINE Alu -13 298 1 2037 109 7 11 chr11 116650945 116651248 -32132224 - AluSq SINE Alu 0 302 1 1948 159 0 0 chr11 116651303 116651593 -32131879 - AluJb SINE Alu -18 294 5 24 0 0 0 chr11 116651763 116651787 -32131685 + AT_rich Low_complexity Low_complexity 1 24 0 299 261 35 6 chr11 116652766 116652896 -32130576 - L1MC/D LINE L1 -734 5430 5333 2083 114 0 7 chr11 116653162 116653443 -32130029 + AluSx SINE Alu 1 279 -33 267 31 0 0 chr11 116653445 116653477 -32129995 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 249 159 0 0 chr11 116653585 116653629 -32129843 + T-rich Low_complexity Low_complexity 1 44 0 248 270 5 19 chr11 116653870 116653972 -32129500 - MLT1L LTR MaLR -340 275 183 370 237 59 68 chr11 116654042 116654278 -32129194 + L1ME4a LINE L1 5782 6015 -106 1735 159 0 18 chr11 116654310 116654593 -32128879 + AluJo SINE Alu 29 306 -6 380 335 56 28 chr11 116655097 116655419 -32128053 - HERV16 LTR ERVL -4360 636 306 225 188 229 10 chr11 116655553 116655649 -32127823 + L1 LINE L1 4903 5019 -1127 23 0 0 0 chr11 116655770 116655793 -32127679 + AT_rich Low_complexity Low_complexity 1 23 0 255 103 0 0 chr11 116655860 116655899 -32127573 + (TG)n Simple_repeat Simple_repeat 2 40 0 344 256 132 40 chr11 116656175 116656425 -32127047 + L1ME4a LINE L1 5709 5981 -140 26 74 0 0 chr11 116657855 116657909 -32125563 + AT_rich Low_complexity Low_complexity 1 54 0 664 167 0 18 chr11 116658155 116658269 -32125203 + FLAM_A SINE Alu 23 134 -8 227 342 58 13 chr11 116658442 116658597 -32124875 - L2 LINE L2 -245 3027 2866 185 288 59 65 chr11 116658693 116658846 -32124626 + MIR SINE MIR 49 200 -62 * 517 281 7 7 chr11 116658832 116658971 -32124501 - L2 LINE L2 0 3272 3134 251 313 68 28 chr11 116659247 116659423 -32124049 - L2 LINE L2 -401 2913 2731 427 249 89 89 chr11 116659528 116659853 -32123619 + MLT1K LTR MaLR 200 524 -64 963 108 0 0 chr11 116660200 116660329 -32123143 - MER72 LTR ERV1 -9 713 585 8710 167 75 86 chr11 116660329 116662469 -32121003 - MER83B-int LTR ERV1 -1318 5440 432 1522 127 131 22 chr11 116662470 116662745 -32120727 - LTR9 LTR ERV1 -307 305 1 2144 139 26 13 chr11 116662745 116663125 -32120347 - MER83B-int LTR ERV1 -3437 3321 2937 2039 175 67 36 chr11 116663183 116663628 -32119844 + LTR2B LTR ERV1 32 490 0 924 172 107 90 chr11 116663628 116663768 -32119704 - MER83B-int LTR ERV1 -2775 3556 3420 1410 167 140 12 chr11 116663768 116664025 -32119447 - AluJb SINE Alu -22 290 1 924 172 107 90 chr11 116664025 116664393 -32119079 - MER83B-int LTR ERV1 -2911 3420 1190 1887 201 39 37 chr11 116664428 116664836 -32118636 - LTR2 LTR ERV1 0 449 41 2012 204 66 79 chr11 116664928 116665072 -32118400 - MER83B-int LTR ERV1 -3556 2390 2246 2439 86 0 3 chr11 116665072 116665376 -32118096 - AluSg SINE Alu -7 303 1 2012 204 66 79 chr11 116665376 116665934 -32117538 - MER83B-int LTR ERV1 -3700 2246 1745 373 175 0 12 chr11 116666056 116666136 -32117336 - MER83B-int LTR ERV1 -2963 1917 1839 350 278 0 0 chr11 116666137 116666209 -32117263 - tRNA-Glu-GAG tRNA tRNA -1 74 3 848 162 7 7 chr11 116666211 116666365 -32117107 - MER83B-int LTR ERV1 -5124 1207 1054 1839 91 34 38 chr11 116666371 116666634 -32116838 + AluSg SINE Alu 1 262 -48 4568 139 18 6 chr11 116667216 116667929 -32115543 - MER72 LTR ERV1 0 722 1 23 0 0 0 chr11 116668555 116668578 -32114894 + AT_rich Low_complexity Low_complexity 1 23 0 238 204 230 80 chr11 116670071 116670099 -32113373 + L2 LINE L2 2925 2947 -366 1289 244 143 18 chr11 116670099 116670546 -32112926 + MLT1D LTR MaLR 1 503 -2 238 204 230 80 chr11 116670546 116670630 -32112842 + L2 LINE L2 2947 3054 -259 247 216 155 52 chr11 116671290 116671387 -32112085 + L2 LINE L2 3158 3264 -49 2144 90 4 0 chr11 116671445 116671741 -32111731 + AluSx SINE Alu 15 311 0 289 0 49 0 chr11 116671975 116672016 -32111456 + (TTTTTG)n Simple_repeat Simple_repeat 2 44 0 27 29 0 0 chr11 116677001 116677035 -32106437 + AT_rich Low_complexity Low_complexity 1 34 0 2239 108 0 10 chr11 116677106 116677402 -32106070 - AluSq SINE Alu -20 293 1 2436 64 13 35 chr11 116677543 116677855 -32105617 - AluSp SINE Alu -8 305 1 2398 100 3 0 chr11 116677879 116678188 -32105284 - AluSq SINE Alu -3 310 1 455 300 27 10 chr11 116678933 116679107 -32104365 + MIR3 SINE MIR 8 180 -62 23 74 0 0 chr11 116681387 116681414 -32102058 + GC_rich Low_complexity Low_complexity 1 27 0 243 225 39 139 chr11 116682384 116682513 -32100959 + MIR SINE MIR 82 197 -65 2438 166 5 35 chr11 116682521 116682943 -32100529 - LTR3 LTR ERVK -2 430 22 2320 88 0 0 chr11 116683032 116683327 -32100145 + AluSq SINE Alu 1 295 -18 336 210 63 77 chr11 116685061 116685204 -32098268 - MIR SINE MIR -46 216 76 21 57 0 0 chr11 116685266 116685301 -32098171 + AT_rich Low_complexity Low_complexity 1 35 0 2214 96 0 56 chr11 116687313 116687637 -32095835 - AluSx SINE Alu -6 306 1 365 292 102 24 chr11 116687807 116688124 -32095348 - HAL1b LINE L1 -864 484 207 225 261 0 43 chr11 116688352 116688421 -32095051 + MLT1J LTR MaLR 110 175 -336 283 200 138 0 chr11 116688650 116688730 -32094742 + MLT1L LTR MaLR 518 608 -7 207 305 230 5 chr11 116689143 116689330 -32094142 - MIR SINE MIR 0 262 34 9174 42 2 1 chr11 116690004 116691879 -32091593 - L1PA5 LINE L1 0 6154 4278 339 210 0 0 chr11 116692411 116692473 -32090999 + MER20B DNA MER1_type 1 62 -721 493 214 150 0 chr11 116692473 116692646 -32090826 + MER20B DNA MER1_type 544 742 -41 1720 155 14 7 chr11 116692648 116692932 -32090540 + AluJo SINE Alu 3 288 -24 321 271 47 0 chr11 116692932 116693017 -32090455 + L1MC4 LINE L1 6615 6703 -1339 318 315 0 0 chr11 116692937 116693026 -32090446 - L1MC4 LINE L1 -1339 6703 6615 * 228 159 0 0 chr11 116693035 116693079 -32090393 + L1MC4 LINE L1 6652 6695 -1347 241 217 96 0 chr11 116693084 116693167 -32090305 + L1MC4 LINE L1 6615 6705 -1337 475 260 11 33 chr11 116693273 116693454 -32090018 - L1MC4 LINE L1 0 8042 7866 970 120 0 8 chr11 116693562 116693695 -32089777 - AluJb SINE Alu -180 132 1 1221 144 10 0 chr11 116693696 116693890 -32089582 - L1MC2 LINE L1 -175 6169 5974 1937 106 47 18 chr11 116693896 116694171 -32089301 - AluSx SINE Alu -10 302 20 688 259 65 30 chr11 116694179 116694411 -32089061 - Charlie7 DNA MER1_type -291 2321 2082 1814 178 3 0 chr11 116694411 116694709 -32088763 + AluJb SINE Alu 1 299 -13 2344 82 0 58 chr11 116694883 116695213 -32088259 - AluSq SINE Alu -2 311 1 1054 117 31 6 chr11 116695685 116695847 -32087625 - L1PA10 LINE L1 -5 6163 5998 628 173 8 60 chr11 116695849 116695982 -32087490 - FLAM_A SINE Alu -4 129 4 2056 140 3 13 chr11 116696170 116696485 -32086987 + AluSx SINE Alu 1 312 0 26 50 0 0 chr11 116697390 116697430 -32086042 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr11 116698661 116698683 -32084789 + AT_rich Low_complexity Low_complexity 1 22 0 2157 96 43 0 chr11 116698730 116699012 -32084460 - AluY SINE Alu -17 294 1 1596 151 3 60 chr11 116699358 116699643 -32083829 - AluJb SINE Alu -7 305 37 2225 127 0 0 chr11 116699712 116700011 -32083461 + AluSx SINE Alu 1 299 -13 2144 157 54 66 chr11 116700025 116700102 -32083370 - MSTB LTR MaLR 0 426 350 1797 160 3 28 chr11 116700102 116700389 -32083083 + AluJb SINE Alu 6 285 -27 2144 157 54 66 chr11 116700389 116700543 -32082929 - MSTB LTR MaLR -76 350 196 1996 119 28 7 chr11 116700543 116700829 -32082643 - AluSq SINE Alu -20 293 2 2144 157 54 66 chr11 116700829 116701023 -32082449 - MSTB LTR MaLR -230 196 5 642 242 163 6 chr11 116701361 116701539 -32081933 + MLT1G1 LTR MaLR 1 206 -389 1476 243 81 51 chr11 116701579 116701617 -32081855 + MER90 LTR ERV1 67 102 -512 1914 99 84 0 chr11 116701617 116701900 -32081572 - AluSx SINE Alu 0 305 1 1476 243 81 51 chr11 116701900 116702392 -32081080 + MER90 LTR ERV1 102 614 0 297 197 7 184 chr11 116702395 116702542 -32080930 + MLT1F LTR MaLR 173 293 -297 414 0 0 0 chr11 116702563 116702609 -32080863 + (GA)n Simple_repeat Simple_repeat 1 46 0 637 219 6 25 chr11 116702676 116702836 -32080636 + MLT1F LTR MaLR 382 538 -4 224 233 0 0 chr11 116702838 116702881 -32080591 + MIR SINE MIR 220 262 0 1961 130 0 11 chr11 116703229 116703534 -32079938 - AluSq SINE Alu 0 302 1 204 226 0 0 chr11 116703782 116703835 -32079637 + (TA)n Simple_repeat Simple_repeat 1 53 0 1020 193 154 29 chr11 116703942 116704222 -32079250 - MLT1D LTR MaLR 0 505 191 824 125 0 0 chr11 116704244 116704356 -32079116 - AluSg/x SINE Alu -30 282 171 874 173 75 106 chr11 116704361 116704440 -32079032 - MLT1D LTR MaLR -258 247 167 2049 128 0 4 chr11 116704440 116704721 -32078751 - AluSg SINE Alu -30 280 1 874 173 75 106 chr11 116704721 116704896 -32078576 - MLT1D LTR MaLR -338 167 1 2103 108 18 0 chr11 116704969 116705255 -32078217 + AluSc SINE Alu 4 294 -15 750 148 15 44 chr11 116705284 116705298 -32078174 - FLAM_C SINE Alu -171 131 118 201 39 0 0 chr11 116705298 116705324 -32078148 + (TG)n Simple_repeat Simple_repeat 2 27 0 750 148 15 44 chr11 116705324 116705444 -32078028 - FLAM_C SINE Alu -184 118 1 1691 140 86 10 chr11 116705517 116705831 -32077641 - MER44D DNA MER2_type -1 608 1 274 182 52 39 chr11 116705840 116705917 -32077555 - MER92B LTR ERV1 -3 633 556 532 191 73 101 chr11 116705961 116706139 -32077333 - MER92B LTR ERV1 -193 443 271 2271 107 7 7 chr11 116706158 116706497 -32076975 - AluSx SINE Alu 0 339 1 431 194 0 0 chr11 116706497 116706564 -32076908 - MER92B LTR ERV1 -569 67 1 2364 85 10 0 chr11 116707237 116707542 -32075930 - AluSx SINE Alu -4 308 1 624 262 65 0 chr11 116708891 116709059 -32074413 - MIR SINE MIR 0 262 84 268 232 358 0 chr11 116709369 116709464 -32074008 + MIR SINE MIR 2 130 -132 551 161 18 0 chr11 116709464 116709576 -32073896 + CT-rich Low_complexity Low_complexity 1 114 0 213 39 0 0 chr11 116709601 116709627 -32073845 + (TCCC)n Simple_repeat Simple_repeat 3 28 0 254 154 0 0 chr11 116709659 116709698 -32073774 + MIR SINE MIR 90 128 -134 276 100 0 0 chr11 116709698 116709738 -32073734 + (TTCC)n Simple_repeat Simple_repeat 2 41 0 228 174 109 0 chr11 116709739 116709785 -32073687 + MIR SINE MIR 80 130 -132 225 65 0 0 chr11 116709793 116709824 -32073648 + (TTCC)n Simple_repeat Simple_repeat 4 34 0 261 150 0 0 chr11 116709870 116709910 -32073562 + MIR SINE MIR 90 129 -133 440 97 0 14 chr11 116709921 116709993 -32073479 + (TTCC)n Simple_repeat Simple_repeat 4 74 0 213 39 0 0 chr11 116710020 116710046 -32073426 + (TCCC)n Simple_repeat Simple_repeat 4 29 0 254 154 0 0 chr11 116710047 116710086 -32073386 + MIR SINE MIR 90 128 -134 186 43 0 0 chr11 116710096 116710119 -32073353 + (TCCC)n Simple_repeat Simple_repeat 2 24 0 469 247 72 5 chr11 116710136 116710151 -32073321 + MIR SINE MIR 100 113 -149 1795 138 0 7 chr11 116710151 116710433 -32073039 - AluSx SINE Alu -32 280 1 469 247 72 5 chr11 116710433 116710567 -32072905 + MIR SINE MIR 113 260 -2 2179 108 26 0 chr11 116710710 116711015 -32072457 - AluSq SINE Alu 0 313 1 2162 82 7 0 chr11 116711183 116711475 -32071997 - AluSp SINE Alu -19 294 1 198 71 0 0 chr11 116711544 116711572 -32071900 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 284 204 0 0 chr11 116712196 116712245 -32071227 - L2 LINE L2 -2 3311 3263 1668 153 7 11 chr11 116712388 116712696 -32070776 - AluJb SINE Alu 0 309 3 756 196 7 29 chr11 116712773 116712911 -32070561 - AluJo SINE Alu -176 136 2 25 0 0 0 chr11 116712979 116713004 -32070468 + AT_rich Low_complexity Low_complexity 1 25 0 2586 26 0 10 chr11 116713099 116713412 -32070060 - AluY SINE Alu -1 310 1 199 340 165 46 chr11 116713418 116713812 -32069660 - L2 LINE L2 0 3272 2832 1386 133 126 41 chr11 116713828 116713955 -32069517 - AluSx SINE Alu -19 293 178 2148 102 0 16 chr11 116713955 116714260 -32069212 - AluSx SINE Alu -12 300 1 2158 116 0 3 chr11 116714267 116714578 -32068894 - AluSg SINE Alu 0 310 1 1386 133 126 41 chr11 116714578 116714712 -32068760 - AluSx SINE Alu -139 173 1 190 250 0 0 chr11 116714855 116714895 -32068577 - L2 LINE L2 -1 3312 3273 2003 113 0 52 chr11 116715348 116715560 -32067912 - AluSq SINE Alu 0 313 122 2304 92 0 0 chr11 116715560 116715865 -32067607 - AluSg SINE Alu -5 305 1 2003 113 0 52 chr11 116715865 116715978 -32067494 - AluSq SINE Alu -191 122 5 831 152 86 86 chr11 116715980 116716016 -32067456 - MER20 DNA MER1_type -9 210 175 1962 116 31 0 chr11 116716016 116716308 -32067164 - AluSq SINE Alu -12 301 1 831 152 86 86 chr11 116716308 116716481 -32066991 - MER20 DNA MER1_type -43 176 1 2302 96 0 0 chr11 116717187 116717490 -32065982 - AluSx SINE Alu -9 303 1 396 329 56 7 chr11 116717493 116717636 -32065836 + L2 LINE L2 2562 2711 -603 400 281 222 6 chr11 116717641 116717808 -32065664 - MIR SINE MIR -2 260 58 1691 193 55 6 chr11 116718136 116718462 -32065010 - MLT1A1 LTR MaLR -23 342 1 1473 180 35 0 chr11 116718614 116718898 -32064574 - L1MB3 LINE L1 0 6183 5890 240 277 119 38 chr11 116718926 116719085 -32064387 + L2 LINE L2 2800 2971 -343 1245 233 27 27 chr11 116719496 116719788 -32063684 + AluJo SINE Alu 1 292 -10 2128 95 7 0 chr11 116719902 116720198 -32063274 - AluSx SINE Alu -14 298 1 360 0 0 0 chr11 116720856 116720896 -32062576 + (TTTA)n Simple_repeat Simple_repeat 4 43 0 2052 111 0 0 chr11 116720896 116721176 -32062296 - AluSx SINE Alu -32 280 1 896 147 0 0 chr11 116721301 116721444 -32062028 - AluJ SINE Alu -5 307 165 677 128 0 0 chr11 116721444 116721538 -32061934 - AluJ SINE Alu -205 107 14 743 201 6 169 chr11 116721759 116721848 -32061624 - MIR SINE MIR 0 262 160 2465 52 0 7 chr11 116721848 116722154 -32061318 - AluY SINE Alu -7 304 1 743 201 6 169 chr11 116722154 116722174 -32061298 - MIR SINE MIR -102 160 138 2017 91 22 0 chr11 116722174 116722489 -32060983 - AluSx SINE Alu 0 321 1 743 201 6 169 chr11 116722489 116722689 -32060783 - MIR SINE MIR -124 138 1 249 33 0 0 chr11 116722920 116722950 -32060522 + (TA)n Simple_repeat Simple_repeat 2 31 0 1648 153 43 13 chr11 116722950 116723250 -32060222 - AluJo SINE Alu -3 309 1 1994 89 64 0 chr11 116723258 116723538 -32059934 - AluSp SINE Alu -15 298 1 987 221 38 122 chr11 116723724 116724140 -32059332 - L1ME3A LINE L1 -234 5936 5487 1048 175 24 127 chr11 116724140 116724472 -32059000 + AluJo SINE Alu 2 299 -3 987 221 38 122 chr11 116724472 116724545 -32058927 - L1ME3A LINE L1 -683 5487 5409 1727 118 33 85 chr11 116724545 116724737 -32058735 - AluSx SINE Alu 0 312 142 1942 96 0 11 chr11 116724737 116725007 -32058465 - AluSg SINE Alu 0 310 44 1727 118 33 85 chr11 116725007 116725143 -32058329 - AluSx SINE Alu -170 142 1 987 221 38 122 chr11 116725143 116725254 -32058218 - L1ME3A LINE L1 -761 5409 5372 2001 128 14 0 chr11 116725254 116725550 -32057922 - AluSx SINE Alu -12 300 1 987 221 38 122 chr11 116725550 116725584 -32057888 - L1ME3A LINE L1 -798 5372 5337 2139 99 3 0 chr11 116726878 116727170 -32056302 + AluSp SINE Alu 1 293 -20 1948 153 0 0 chr11 116727352 116727652 -32055820 - AluSx SINE Alu -12 300 1 231 240 33 74 chr11 116727769 116727890 -32055582 + MIR SINE MIR 72 187 -75 2033 116 0 16 chr11 116727902 116728205 -32055267 + AluSx SINE Alu 1 298 -14 831 152 86 86 chr11 116728911 116729084 -32054388 + MER20 DNA MER1_type 1 176 -43 1962 116 31 0 chr11 116729084 116729376 -32054096 + AluSq SINE Alu 1 301 -12 831 152 86 86 chr11 116729376 116729412 -32054060 + MER20 DNA MER1_type 175 210 -9 1997 113 0 55 chr11 116729414 116729527 -32053945 + AluSq SINE Alu 5 123 -190 2271 95 0 0 chr11 116729527 116729831 -32053641 + AluSg SINE Alu 1 304 -6 1997 113 0 55 chr11 116729831 116730044 -32053428 + AluSq SINE Alu 123 313 0 190 250 0 0 chr11 116730498 116730538 -32052934 + L2 LINE L2 3273 3312 -1 1296 126 119 91 chr11 116730681 116730815 -32052657 + AluSx SINE Alu 1 130 -182 2135 108 0 3 chr11 116730815 116731111 -32052361 + AluSg SINE Alu 1 295 -15 1296 126 119 91 chr11 116731111 116731133 -32052339 + AluSx SINE Alu 130 150 -162 1863 117 0 29 chr11 116731133 116731442 -32052030 + AluSx SINE Alu 1 300 -12 1296 126 119 91 chr11 116731442 116731569 -32051903 + AluSx SINE Alu 150 293 -19 199 340 165 46 chr11 116731585 116731979 -32051493 + L2 LINE L2 2832 3272 0 2576 20 0 7 chr11 116731985 116732287 -32051185 + AluY SINE Alu 1 300 -11 688 153 32 8 chr11 116732388 116732512 -32050960 - FLAM_C SINE Alu -15 128 2 2151 88 7 3 chr11 116732520 116732816 -32050656 - AluSp SINE Alu -16 297 1 2441 65 0 0 chr11 116732834 116733144 -32050328 + AluY SINE Alu 2 311 0 3207 216 44 62 chr11 116733192 116734018 -32049454 + MER21B LTR ERV1 1 811 -52 2459 222 93 27 chr11 116734084 116734402 -32049070 + L1ME3 LINE L1 5360 5656 -506 1993 132 7 0 chr11 116734402 116734705 -32048767 - AluJb SINE Alu -7 305 1 2459 222 93 27 chr11 116734705 116734970 -32048502 + L1ME3 LINE L1 5656 6003 -159 1986 190 50 43 chr11 116734970 116735151 -32048321 + MLT1C LTR MaLR 1 179 -288 2333 86 3 3 chr11 116735151 116735455 -32048017 + AluSp SINE Alu 1 304 -9 1986 190 50 43 chr11 116735455 116735737 -32047735 + MLT1C LTR MaLR 179 467 0 2459 222 93 27 chr11 116735737 116735883 -32047589 + L1ME3 LINE L1 6003 6138 -24 652 200 7 22 chr11 116735987 116736122 -32047350 + FLAM_C SINE Alu 1 133 0 302 0 26 0 chr11 116736457 116736495 -32046977 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 1075 127 0 0 chr11 116736502 116736660 -32046812 - AluSx SINE Alu -25 287 130 2013 100 0 4 chr11 116736667 116736964 -32046508 - AluSq SINE Alu 0 310 15 2081 95 0 0 chr11 116736977 116737299 -32046173 - AluSc SINE Alu 0 322 1 901 136 0 0 chr11 116737302 116737434 -32046038 - AluSx SINE Alu -180 132 1 1488 111 5 5 chr11 116737859 116738076 -32045396 + AluSq SINE Alu 3 219 -94 1763 179 144 44 chr11 116738228 116738687 -32044785 - MLT1D LTR MaLR 0 505 1 323 326 89 52 chr11 116739016 116739286 -32044186 + L2 LINE L2 2911 3190 -82 1452 166 27 4 chr11 116739378 116739637 -32043835 + AluJb SINE Alu 38 302 -10 2204 95 3 0 chr11 116740406 116740702 -32042770 - AluSq SINE Alu -16 297 1 2282 155 19 152 chr11 116740755 116741399 -32042073 + LTR6A LTR ERV1 1 564 0 2146 106 0 7 chr11 116741533 116741836 -32041636 - AluSx SINE Alu -11 301 1 574 90 12 3 chr11 116741836 116741917 -32041555 - MLT1C LTR MaLR -308 82 1 260 331 117 32 chr11 116742368 116742502 -32040970 + L2 LINE L2 3099 3249 -23 1637 160 19 36 chr11 116742502 116742809 -32040663 - AluJo SINE Alu -10 302 1 260 331 117 32 chr11 116742809 116742828 -32040644 + L2 LINE L2 3249 3265 -7 37 23 0 0 chr11 116743018 116743062 -32040410 + AT_rich Low_complexity Low_complexity 1 44 0 1573 193 3 19 chr11 116743177 116743310 -32040162 + AluJo SINE Alu 1 135 -177 2137 119 0 13 chr11 116743310 116743620 -32039852 + AluSx SINE Alu 1 306 -6 1573 193 3 19 chr11 116743620 116743802 -32039670 + AluJo SINE Alu 135 311 -1 2128 103 3 3 chr11 116743827 116744193 -32039279 + AluY SINE Alu 1 366 0 568 273 35 0 chr11 116744236 116744379 -32039093 + MIR3 SINE MIR 10 157 -51 1285 80 23 0 chr11 116744458 116744633 -32038839 + AluSp SINE Alu 122 300 -13 254 191 38 114 chr11 116744704 116744762 -32038710 - MER112 DNA MER1_type -99 161 113 1537 180 17 3 chr11 116744762 116745056 -32038416 - AluJo SINE Alu -14 298 1 254 191 38 114 chr11 116745056 116745102 -32038370 - MER112 DNA MER1_type -147 113 65 195 262 0 0 chr11 116745191 116745233 -32038239 + MIR3 SINE MIR 151 192 -16 1292 244 109 33 chr11 116745279 116745526 -32037946 + L2 LINE L2 2820 3047 -266 2135 107 3 0 chr11 116745526 116745824 -32037648 + AluSq SINE Alu 1 299 -14 1292 244 109 33 chr11 116745824 116746035 -32037437 + L2 LINE L2 3047 3313 0 25 31 0 0 chr11 116746086 116746118 -32037354 + AT_rich Low_complexity Low_complexity 1 32 0 1713 170 0 0 chr11 116746172 116746448 -32037024 + AluSx SINE Alu 5 280 -32 240 35 0 0 chr11 116746459 116746488 -32036984 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1649 149 0 28 chr11 116746899 116747161 -32036311 - AluJb SINE Alu 0 307 53 4079 165 28 40 chr11 116747161 116747956 -32035516 - LTR1 LTR ERV1 0 785 1 1649 149 0 28 chr11 116747956 116747998 -32035474 - AluJb SINE Alu -254 53 11 576 156 147 0 chr11 116748292 116748401 -32035071 + FLAM_C SINE Alu 5 129 -4 1992 136 39 83 chr11 116748527 116748873 -32034599 - LTR45B LTR ERV1 -96 393 33 1573 161 11 3 chr11 116748873 116749159 -32034313 + AluSx SINE Alu 1 288 -24 1992 136 39 83 chr11 116749159 116749182 -32034290 - LTR45B LTR ERV1 -456 33 39 1912 121 0 24 chr11 116749182 116749501 -32033971 + AluSq SINE Alu 1 312 0 1992 136 39 83 chr11 116749501 116749540 -32033932 - LTR45B LTR ERV1 -449 40 1 214 372 103 22 chr11 116750090 116750313 -32033159 + L2 LINE L2 2521 2761 -553 768 224 83 61 chr11 116750488 116750752 -32032720 - MLT1J LTR MaLR 0 511 242 9496 28 0 196 chr11 116750897 116752610 -32030862 - SVA Other Other -6 1380 3 280 220 17 0 chr11 116752678 116752737 -32030735 + MLT1K LTR MaLR 350 409 -179 1897 119 34 3 chr11 116752880 116753173 -32030299 - AluSx SINE Alu -3 309 8 289 113 151 0 chr11 116753177 116753230 -32030242 + MSTD LTR MaLR 336 396 0 266 289 0 0 chr11 116753233 116753285 -32030187 - MER45 DNA AcHobo -1528 53 2 1033 147 147 15 chr11 116753346 116753672 -32029800 - LTR47A LTR ERVL 0 452 1 239 308 63 6 chr11 116753892 116754051 -32029421 + L1M4c LINE L1 2258 2425 -3959 733 267 43 87 chr11 116754112 116754125 -32029347 + L1M4c LINE L1 2440 2452 -3930 2284 85 10 0 chr11 116754125 116754432 -32029040 + AluSq SINE Alu 1 310 -3 733 267 43 87 chr11 116754432 116754767 -32028705 + L1M4c LINE L1 2452 2800 -3582 778 178 20 99 chr11 116754767 116754969 -32028503 - MER5A DNA MER1_type -3 186 1 733 267 43 87 chr11 116754969 116755065 -32028407 + L1M4c LINE L1 2800 2899 -3483 2056 129 3 0 chr11 116755065 116755376 -32028096 + AluSx SINE Alu 1 312 0 733 267 43 87 chr11 116755376 116755428 -32028044 + L1M4c LINE L1 2899 2952 -3430 2200 81 19 3 chr11 116755428 116755735 -32027737 + AluSp SINE Alu 2 313 0 733 267 43 87 chr11 116755735 116755847 -32027625 + L1M4c LINE L1 2952 3067 -3315 1447 177 89 0 chr11 116755847 116756118 -32027354 + AluJo SINE Alu 1 295 -17 733 267 43 87 chr11 116756118 116756186 -32027286 + L1M4c LINE L1 3067 3136 -3246 1714 166 3 3 chr11 116756186 116756482 -32026990 + AluSx SINE Alu 1 296 -16 733 267 43 87 chr11 116756482 116756736 -32026736 + L1M4c LINE L1 3136 3396 -2986 1370 153 78 0 chr11 116756745 116757031 -32026441 + AluJo SINE Alu 10 315 0 1981 164 45 26 chr11 116757457 116757575 -32025897 - MLT1B LTR MaLR 0 390 276 2008 113 3 0 chr11 116757575 116757866 -32025606 - AluSp SINE Alu -21 292 1 1981 164 45 26 chr11 116757866 116758124 -32025348 - MLT1B LTR MaLR -114 276 7 1135 186 72 27 chr11 116758127 116758390 -32025082 - MLT1B-int LTR MaLR -27 1708 1434 1885 145 3 10 chr11 116758395 116758706 -32024766 + AluSx SINE Alu 1 309 -3 256 314 70 0 chr11 116758709 116758795 -32024677 - MLT1B-int LTR MaLR -362 1373 1282 203 298 274 0 chr11 116758906 116758990 -32024482 - L2 LINE L2 -258 3055 2949 409 314 145 12 chr11 116759044 116759299 -32024173 - L2 LINE L2 -502 2812 2524 328 104 0 21 chr11 116759300 116759348 -32024124 + AluSp SINE Alu 124 170 -133 248 283 9 57 chr11 116759487 116759593 -32023879 + MLT1K LTR MaLR 418 518 -70 2674 94 5 80 chr11 116759603 116759779 -32023693 + L1MA2 LINE L1 5891 6079 -225 2150 130 0 0 chr11 116759779 116760061 -32023411 + AluSx SINE Alu 1 285 -27 316 0 0 0 chr11 116760061 116760096 -32023376 + (CAAAA)n Simple_repeat Simple_repeat 1 125 0 2150 130 0 0 chr11 116760096 116760125 -32023347 + AluSx SINE Alu 284 312 0 2674 94 5 80 chr11 116760125 116760191 -32023281 + L1MA2 LINE L1 6079 6148 -156 233 120 40 20 chr11 116760191 116760207 -32023265 + AluSg/x SINE Alu 118 134 -166 2381 84 7 0 chr11 116760207 116760516 -32022956 + AluSp SINE Alu 1 311 -2 2674 94 5 80 chr11 116760241 116760691 -32022781 + L1MA2 LINE L1 6148 6304 0 2005 160 0 3 chr11 116760727 116761033 -32022439 + AluJo SINE Alu 1 305 -7 543 293 79 35 chr11 116761060 116761083 -32022389 - L2 LINE L2 -2292 1022 1001 2322 89 3 0 chr11 116761083 116761376 -32022096 + AluSp SINE Alu 1 294 -19 543 293 79 35 chr11 116761376 116761642 -32021830 - L2 LINE L2 -2313 1001 720 239 87 43 0 chr11 116761956 116762002 -32021470 + T-rich Low_complexity Low_complexity 2 49 0 2089 139 0 0 chr11 116762463 116762758 -32020714 - AluSq SINE Alu -17 296 2 2321 107 0 0 chr11 116763038 116763347 -32020125 + AluSx SINE Alu 1 309 -3 932 262 104 52 chr11 116763347 116763767 -32019705 - HAL1 LINE L1 -782 1725 1328 1976 154 0 13 chr11 116763767 116764078 -32019394 - AluJb SINE Alu -3 309 3 932 262 104 52 chr11 116764078 116764093 -32019379 - HAL1 LINE L1 -1179 1328 1315 2396 86 10 0 chr11 116764093 116764394 -32019078 - AluSx SINE Alu -8 304 1 932 262 104 52 chr11 116764394 116764495 -32018977 - HAL1 LINE L1 -1192 1315 1160 557 204 8 8 chr11 116764667 116764799 -32018673 - HAL1 LINE L1 -1317 1190 1059 216 0 0 0 chr11 116764805 116764829 -32018643 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1421 194 7 21 chr11 116764831 116765114 -32018358 - AluJo SINE Alu -33 279 1 394 240 76 120 chr11 116765263 116765513 -32017959 - HAL1 LINE L1 -2257 250 12 285 351 26 9 chr11 116765521 116765635 -32017837 - MIR SINE MIR -63 145 30 211 222 67 0 chr11 116765760 116765805 -32017667 + MIR SINE MIR 196 243 -19 * 246 236 0 0 chr11 116765775 116765830 -32017642 + L2 LINE L2 3259 3313 0 228 125 0 0 chr11 116766011 116766051 -32017421 + L1MA3 LINE L1 6266 6305 0 201 298 0 0 chr11 116766089 116766136 -32017336 + MIR SINE MIR 45 91 -171 2055 143 3 0 chr11 116766278 116766572 -32016900 + AluSx SINE Alu 1 295 -17 1839 146 0 7 chr11 116766575 116766902 -32016570 + AluSx SINE Alu 5 329 0 871 220 0 13 chr11 116767236 116767395 -32016077 - FRAM SINE Alu -19 157 1 28 29 0 0 chr11 116767812 116767847 -32015625 + AT_rich Low_complexity Low_complexity 1 35 0 727 309 63 31 chr11 116767868 116767971 -32015501 + L2 LINE L2 2296 2394 -920 2357 104 3 0 chr11 116767971 116768278 -32015194 - AluSx SINE Alu -4 308 1 727 309 63 31 chr11 116768278 116768523 -32014949 + L2 LINE L2 2394 2655 -659 2198 110 0 0 chr11 116768757 116769082 -32014390 - AluSx SINE Alu 0 325 1 2050 150 3 0 chr11 116769205 116769505 -32013967 - AluSx SINE Alu -11 301 1 227 219 141 31 chr11 116769576 116769640 -32013832 + MIR SINE MIR 18 88 -174 2290 97 7 10 chr11 116769641 116769816 -32013656 - AluSg1 SINE Alu -1 308 133 2350 77 3 16 chr11 116769816 116770129 -32013343 - AluY SINE Alu -1 310 2 2290 97 7 10 chr11 116770129 116770262 -32013210 - AluSg1 SINE Alu -176 133 1 22 35 0 0 chr11 116770262 116770291 -32013181 + AT_rich Low_complexity Low_complexity 1 29 0 245 211 19 0 chr11 116770308 116770360 -32013112 + MIR SINE MIR 99 151 -111 24 85 0 0 chr11 116770379 116770438 -32013034 + AT_rich Low_complexity Low_complexity 1 59 0 1874 128 42 45 chr11 116770659 116770971 -32012501 - AluSx SINE Alu -1 311 1 330 45 0 0 chr11 116771349 116771393 -32012079 + (TG)n Simple_repeat Simple_repeat 1 44 0 1220 168 137 23 chr11 116771545 116771807 -32011665 - AluJb SINE Alu -20 292 1 850 148 0 63 chr11 116771852 116771994 -32011478 - FLAM_C SINE Alu 0 133 1 2160 125 6 3 chr11 116772075 116772386 -32011086 - AluSp SINE Alu -1 312 1 2225 136 111 25 chr11 116772873 116773001 -32010471 - L1M3 LINE L1 -381 5787 5671 2321 99 0 3 chr11 116773001 116773303 -32010169 - AluY SINE Alu -10 301 1 2225 136 111 25 chr11 116773303 116773608 -32009864 - L1M3 LINE L1 -497 5671 5317 2150 136 0 53 chr11 116773608 116773939 -32009533 + L1MB1 LINE L1 5812 6122 -46 2085 131 3 0 chr11 116773939 116774237 -32009235 + AluSq SINE Alu 1 299 -14 2150 136 0 53 chr11 116774237 116774281 -32009191 + L1MB1 LINE L1 6122 6167 -1 398 20 20 0 chr11 116774789 116774840 -32008632 + (TTCTCC)n Simple_repeat Simple_repeat 4 55 0 1944 86 4 0 chr11 116774982 116775227 -32008245 - AluSx SINE Alu -9 303 58 1937 139 0 0 chr11 116775782 116776063 -32007409 - AluSx SINE Alu -31 281 1 304 268 57 32 chr11 116776068 116776225 -32007247 + Charlie7 DNA MER1_type 2452 2612 0 516 306 86 0 chr11 116776258 116776444 -32007028 + MIR SINE MIR 2 203 -59 2133 129 10 0 chr11 116776691 116777000 -32006472 - AluSx SINE Alu 0 312 1 2540 134 143 0 chr11 116777026 116777503 -32005969 - L1MA7 LINE L1 0 6291 5747 446 267 80 43 chr11 116778084 116778271 -32005201 - MIR SINE MIR -56 206 13 2282 100 0 7 chr11 116779851 116780150 -32003322 + AluSq SINE Alu 1 297 -16 21 71 0 0 chr11 116780190 116780232 -32003240 + AT_rich Low_complexity Low_complexity 1 42 0 210 150 0 0 chr11 116781215 116781255 -32002217 + (TG)n Simple_repeat Simple_repeat 2 41 0 1163 252 68 73 chr11 116782508 116783100 -32000372 - L1ME3A LINE L1 -36 6134 5546 212 275 36 109 chr11 116783188 116783326 -32000146 + MIR SINE MIR 57 184 -78 911 159 0 0 chr11 116783774 116783906 -31999566 - FLAM_C SINE Alu -1 132 1 796 202 0 0 chr11 116784052 116784176 -31999296 - FLAM_A SINE Alu -9 124 1 200 200 0 0 chr11 116784988 116785023 -31998449 + (CA)n Simple_repeat Simple_repeat 2 36 0 783 176 77 55 chr11 116785152 116785334 -31998138 - MLT2D LTR ERVL 0 414 229 * 1970 134 16 3 chr11 116785325 116785631 -31997841 - MLT1B LTR MaLR -80 310 1 23 0 0 0 chr11 116786733 116786756 -31996716 + AT_rich Low_complexity Low_complexity 1 23 0 576 205 32 87 chr11 116787097 116787282 -31996190 + MER5B DNA MER1_type 4 178 0 553 274 72 7 chr11 116787293 116787446 -31996026 - MER5A DNA MER1_type -3 186 24 489 260 24 71 chr11 116787454 116787623 -31995849 - MER5B DNA MER1_type -13 165 5 360 0 0 0 chr11 116787870 116787910 -31995562 + (TG)n Simple_repeat Simple_repeat 2 41 0 196 250 125 0 chr11 116788000 116788056 -31995416 - MIR SINE MIR -12 250 188 480 318 68 7 chr11 116788716 116788864 -31994608 - L2 LINE L2 0 3272 3116 248 322 183 5 chr11 116790932 116791145 -31992327 - MIR SINE MIR -6 256 9 293 301 24 0 chr11 116791615 116791698 -31991774 + MIR SINE MIR 73 157 -105 395 270 90 0 chr11 116791728 116791839 -31991633 + MIR SINE MIR 137 257 -5 2327 102 3 0 chr11 116791916 116792220 -31991252 - AluSx SINE Alu -7 305 1 426 288 68 34 chr11 116792423 116792600 -31990872 + MER5A DNA MER1_type 3 185 -4 1626 181 0 42 chr11 116792652 116792962 -31990510 - AluJb SINE Alu -15 297 1 2474 52 0 0 chr11 116794272 116794561 -31988911 + AluY SINE Alu 8 296 -15 802 161 0 0 chr11 116794566 116794684 -31988788 + FLAM_C SINE Alu 1 118 -25 30 0 0 0 chr11 116794684 116794714 -31988758 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr11 116795226 116795246 -31988226 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1947 101 14 11 chr11 116795278 116795597 -31987875 + AluSc SINE Alu 1 320 0 764 202 0 0 chr11 116795854 116795978 -31987494 - FLAM_A SINE Alu -5 128 5 2005 138 7 10 chr11 116795999 116796295 -31987177 - AluJb SINE Alu -17 295 1 224 360 85 13 chr11 116796634 116796787 -31986685 - MIR3 SINE MIR -15 193 30 367 307 101 9 chr11 116797490 116797718 -31985754 + MIR SINE MIR 2 250 -12 21 57 0 0 chr11 116797968 116798003 -31985469 + AT_rich Low_complexity Low_complexity 1 35 0 528 284 112 61 chr11 116798139 116799314 -31984158 - L1M4 LINE L1 -1453 4693 3375 2883 234 99 64 chr11 116799705 116800361 -31983111 - L1MDb LINE L1 -4080 2507 1876 2145 86 11 4 chr11 116800361 116800679 -31982793 - AluSc SINE Alu 0 320 1 2883 234 99 64 chr11 116800679 116801654 -31981818 - L1MDb LINE L1 -4711 1876 765 239 232 18 0 chr11 116802563 116802619 -31980853 + L1MCc LINE L1 1281 1337 -5086 1270 175 112 15 chr11 116803190 116803262 -31980210 + AluJo SINE Alu 18 82 -230 1970 104 0 15 chr11 116803262 116803530 -31979942 - AluSg SINE Alu -46 264 1 1270 175 112 15 chr11 116803530 116803725 -31979747 + AluJo SINE Alu 82 311 -1 434 286 29 64 chr11 116804016 116804156 -31979316 - L2 LINE L2 -5 3267 3133 333 316 0 0 chr11 116804175 116804289 -31979183 - MIR SINE MIR -3 259 146 180 0 0 0 chr11 116804496 116804516 -31978956 + (TGAA)n Simple_repeat Simple_repeat 4 23 0 249 356 69 11 chr11 116804518 116804692 -31978780 - L2 LINE L2 -248 3024 2841 1635 255 67 32 chr11 116804710 116805236 -31978236 - MLT1H LTR MaLR 0 549 6 183 344 16 16 chr11 116805580 116805644 -31977828 + L3 LINE CR1 1512 1575 -2 2094 120 0 3 chr11 116805991 116806274 -31977198 + AluSx SINE Alu 1 282 -30 403 234 83 130 chr11 116806411 116806488 -31976984 + MIR SINE MIR 67 146 -116 1753 157 7 4 chr11 116806488 116806769 -31976703 + AluJb SINE Alu 4 285 -27 403 234 83 130 chr11 116806769 116806883 -31976589 + MIR SINE MIR 146 249 -13 28 29 0 0 chr11 116806901 116806936 -31976536 + AT_rich Low_complexity Low_complexity 1 35 0 2233 99 3 17 chr11 116806950 116807252 -31976220 - AluSx SINE Alu -13 299 2 354 319 94 58 chr11 116807516 116807792 -31975680 - L2 LINE L2 -1 3271 2986 * 375 272 18 26 chr11 116807786 116807900 -31975572 + MIR SINE MIR 37 149 -113 462 190 0 0 chr11 116808042 116808121 -31975351 - MIR SINE MIR -67 195 117 1953 139 160 11 chr11 116808130 116808498 -31974974 - MSTA LTR MaLR 0 428 6 28 61 0 0 chr11 116808600 116808649 -31974823 + AT_rich Low_complexity Low_complexity 1 49 0 2664 134 57 9 chr11 116808649 116808962 -31974510 - L1PA16 LINE L1 -9 6157 5817 2458 88 0 0 chr11 116808962 116809268 -31974204 - AluSg SINE Alu -4 306 1 2664 134 57 9 chr11 116809268 116809379 -31974093 - L1PA16 LINE L1 -349 5817 5713 236 317 42 17 chr11 116809500 116809620 -31973852 - LTR67 LTR ERVL -3 554 432 385 299 51 0 chr11 116810362 116810479 -31972993 - MIR3 SINE MIR -4 204 82 936 261 107 14 chr11 116811145 116811425 -31972047 - MLT1H LTR MaLR 0 549 244 1444 159 55 0 chr11 116811463 116811720 -31971752 - AluSc SINE Alu -2 307 37 2094 138 7 0 chr11 116811908 116812212 -31971260 + AluSx SINE Alu 1 306 -6 226 329 0 26 chr11 116812521 116812597 -31970875 + MLT1K LTR MaLR 190 263 -325 400 213 0 0 chr11 116812689 116812764 -31970708 + MLT1K LTR MaLR 406 480 -108 229 229 33 0 chr11 116812829 116812890 -31970582 + MIR SINE MIR 184 246 -16 268 224 0 0 chr11 116812901 116812959 -31970513 + MLT1L LTR MaLR 552 609 -6 973 195 0 37 chr11 116813481 116813696 -31969776 - AluJo SINE Alu -17 295 89 196 330 80 65 chr11 116813840 116814191 -31969281 - L2 LINE L2 -1390 1924 1569 1911 145 0 10 chr11 116814318 116814614 -31968858 - AluSp SINE Alu -20 293 1 1391 203 115 12 chr11 116814615 116815014 -31968458 + Charlie1b DNA MER1_type 70 509 -14 345 255 69 97 chr11 116815217 116815362 -31968110 + MIR3 SINE MIR 8 148 -60 2289 113 3 0 chr11 116815366 116815675 -31967797 + AluSx SINE Alu 2 311 -1 216 0 0 0 chr11 116817184 116817208 -31966264 + (CA)n Simple_repeat Simple_repeat 2 25 0 2292 85 0 38 chr11 116817227 116817543 -31965929 - AluSg SINE Alu -6 304 1 244 125 25 0 chr11 116818618 116818658 -31964814 - MADE1 DNA Mariner -39 41 1 315 85 0 0 chr11 116819056 116819103 -31964369 + (TG)n Simple_repeat Simple_repeat 2 48 0 1528 120 136 8 chr11 116819103 116819353 -31964119 - AluSg SINE Alu -28 282 1 1102 88 0 7 chr11 116819353 116819490 -31963982 - AluSq/x SINE Alu -177 136 1 662 253 60 0 chr11 116820372 116820554 -31962918 - MIR SINE MIR 0 262 70 1579 156 3 59 chr11 116820560 116820867 -31962605 + AluJb SINE Alu 1 290 -22 2233 115 0 6 chr11 116820972 116821285 -31962187 - AluSx SINE Alu -1 311 1 431 301 72 7 chr11 116821336 116821489 -31961983 - L2 LINE L2 0 3272 3110 269 311 135 20 chr11 116822406 116822554 -31960918 + MIR3 SINE MIR 37 201 -7 2315 101 0 0 chr11 116822612 116822918 -31960554 + AluSq SINE Alu 1 306 -7 1063 189 120 4 chr11 116823036 116823269 -31960203 + MIR SINE MIR 2 261 -1 2016 123 0 32 chr11 116823526 116823835 -31959637 - AluSx SINE Alu -13 299 1 234 370 50 0 chr11 116823850 116823950 -31959522 + MIR SINE MIR 3 107 -155 1831 165 152 48 chr11 116824399 116824854 -31958618 - MLT1D LTR MaLR 0 505 4 331 326 89 52 chr11 116825183 116825453 -31958019 + L2 LINE L2 2911 3190 -82 1595 161 27 4 chr11 116825544 116825805 -31957667 + AluJb SINE Alu 38 304 -8 2314 95 3 0 chr11 116826574 116826870 -31956602 - AluSq SINE Alu -16 297 1 2282 165 16 149 chr11 116826923 116827567 -31955905 + LTR6A LTR ERV1 1 564 0 2223 107 3 3 chr11 116827701 116827999 -31955473 - AluSc SINE Alu -11 298 1 195 189 0 0 chr11 116827999 116828036 -31955436 + MIR SINE MIR 103 139 -69 1797 178 0 13 chr11 116828414 116828718 -31954754 - AluJb SINE Alu -12 300 1 1033 198 0 20 chr11 116829714 116829911 -31953561 + AluJo SINE Alu 1 193 -119 2435 84 3 0 chr11 116830626 116830936 -31952536 - AluY SINE Alu 0 311 1 1347 241 26 61 chr11 116830947 116831124 -31952348 - Charlie4a DNA MER1_type -1517 444 262 798 156 0 30 chr11 116831124 116831259 -31952213 - FLAM_C SINE Alu 0 133 3 1347 241 26 61 chr11 116831259 116831538 -31951934 - Charlie4a DNA MER1_type -1699 262 4 732 222 63 11 chr11 116831600 116831789 -31951683 - MSTC LTR MaLR 0 428 230 2105 121 0 0 chr11 116831807 116832089 -31951383 - AluSx SINE Alu -16 296 15 2246 83 6 49 chr11 116832089 116832415 -31951057 - AluSx SINE Alu 0 312 1 362 151 0 0 chr11 116832415 116832468 -31951004 - MSTC LTR MaLR -375 53 1 1818 214 97 135 chr11 116832499 116832788 -31950684 - L1MC5 LINE L1 -722 7239 6941 2143 114 3 0 chr11 116832788 116833085 -31950387 - AluSg SINE Alu -12 298 1 1818 214 97 135 chr11 116833085 116833317 -31950155 - L1MC5 LINE L1 -1020 6941 6702 1951 143 7 7 chr11 116833317 116833476 -31949996 - AluSx SINE Alu -18 294 133 2305 97 0 0 chr11 116833476 116833774 -31949698 - AluSx SINE Alu -14 298 1 1951 143 7 7 chr11 116833774 116833908 -31949564 - AluSx SINE Alu -178 134 1 1818 214 97 135 chr11 116833908 116834697 -31948775 - L1MC5 LINE L1 -1259 6702 5968 1513 147 121 11 chr11 116834697 116834962 -31948510 + AluSg1 SINE Alu 1 294 -15 1818 214 97 135 chr11 116834962 116835304 -31948168 - L1MC5 LINE L1 -1993 5968 5614 533 160 116 107 chr11 116835496 116835571 -31947901 + MER5A DNA MER1_type 4 77 -112 2349 84 3 3 chr11 116835571 116835879 -31947593 + AluSg SINE Alu 1 308 -2 533 160 116 107 chr11 116835879 116835985 -31947487 + MER5A DNA MER1_type 77 187 -2 677 203 0 0 chr11 116835995 116836123 -31947349 - MER3 DNA MER1_type 0 209 82 721 247 30 0 chr11 116836183 116836349 -31947123 - MER3 DNA MER1_type 0 209 39 305 262 0 0 chr11 116836346 116836407 -31947065 - MER3 DNA MER1_type -100 109 49 * 2064 149 7 0 chr11 116837285 116837593 -31945879 - AluSx SINE Alu -2 310 1 448 320 47 29 chr11 116837998 116838170 -31945302 - MER5B DNA MER1_type -1 177 3 191 326 286 0 chr11 116838546 116838644 -31944828 - L2 LINE L2 -9 3263 3138 2000 115 31 17 chr11 116838996 116839284 -31944188 - AluSx SINE Alu -20 292 1 2285 108 0 0 chr11 116840270 116840566 -31942906 - AluSx SINE Alu -16 296 1 262 241 95 30 chr11 116840722 116840846 -31942626 + MIR3 SINE MIR 9 144 -78 236 98 0 24 chr11 116840905 116840946 -31942526 + (TCCC)n Simple_repeat Simple_repeat 4 43 0 2040 128 7 0 chr11 116840966 116841256 -31942216 - AluSx SINE Alu -10 302 11 319 275 69 9 chr11 116841301 116841424 -31942048 + MIR SINE MIR 56 186 -63 833 114 0 32 chr11 116842253 116842376 -31941096 - FLAM_C SINE Alu -19 124 6 570 267 59 25 chr11 116842471 116842673 -31940799 + L1ME3A LINE L1 5732 5940 -230 1560 170 4 0 chr11 116842843 116843090 -31940382 - AluSx SINE Alu -64 248 1 2351 97 3 3 chr11 116843104 116843441 -31940031 - AluSg SINE Alu 0 338 2 355 326 92 32 chr11 116843557 116843775 -31939697 - L2 LINE L2 -458 2856 2626 566 341 51 57 chr11 116843781 116843913 -31939559 + L2 LINE L2 1990 2121 -1193 2054 116 23 16 chr11 116843913 116844223 -31939249 - AluSx SINE Alu 0 312 1 566 341 51 57 chr11 116844223 116844583 -31938889 + L2 LINE L2 2121 2479 -835 1908 153 3 27 chr11 116844632 116844932 -31938540 + AluJb SINE Alu 1 293 -19 342 0 0 0 chr11 116845165 116845203 -31938269 + (TG)n Simple_repeat Simple_repeat 2 39 0 1830 146 0 32 chr11 116845614 116845951 -31937521 - AluJb SINE Alu 0 312 1 27 0 0 0 chr11 116845991 116846018 -31937454 + AT_rich Low_complexity Low_complexity 1 27 0 1745 141 74 0 chr11 116846133 116846402 -31937070 - AluSx SINE Alu -21 291 3 1069 110 0 0 chr11 116846403 116846539 -31936933 - AluJb SINE Alu -176 136 1 1223 144 10 0 chr11 116846540 116846734 -31936738 - L1MC2 LINE L1 -175 6169 5974 1922 106 47 18 chr11 116846740 116847015 -31936457 - AluSx SINE Alu -10 302 20 707 259 65 30 chr11 116847023 116847255 -31936217 - Charlie7 DNA MER1_type -291 2321 2082 1821 174 3 0 chr11 116847255 116847553 -31935919 + AluJb SINE Alu 1 299 -13 2325 82 0 58 chr11 116847727 116848057 -31935415 - AluSq SINE Alu -2 311 1 1108 121 36 0 chr11 116848529 116848695 -31934777 - L1PA10 LINE L1 -5 6163 5992 698 160 8 61 chr11 116848695 116848826 -31934646 - FLAM_A SINE Alu -6 127 4 2082 139 0 13 chr11 116849014 116849330 -31934142 + AluSx SINE Alu 1 312 0 26 50 0 0 chr11 116850235 116850275 -31933197 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr11 116851506 116851528 -31931944 + AT_rich Low_complexity Low_complexity 1 22 0 1241 117 0 0 chr11 116851575 116851737 -31931735 - AluSg/x SINE Alu -17 295 134 1418 122 148 61 chr11 116851737 116852015 -31931457 - AluSx SINE Alu -10 302 1 269 311 135 20 chr11 116852073 116852221 -31931251 - MIR3 SINE MIR -7 201 37 431 301 72 7 chr11 116853138 116853291 -31930181 + L2 LINE L2 3110 3272 0 2228 118 0 6 chr11 116853342 116853656 -31929816 + AluSx SINE Alu 1 312 0 1618 147 3 80 chr11 116853761 116854075 -31929397 - AluJb SINE Alu -22 290 1 662 253 60 0 chr11 116854081 116854263 -31929209 + MIR SINE MIR 70 262 0 1102 88 0 7 chr11 116855146 116855283 -31928189 + AluSq/x SINE Alu 1 136 -176 1484 128 136 8 chr11 116855283 116855533 -31927939 + AluSg SINE Alu 1 282 -28 315 85 0 0 chr11 116855533 116855580 -31927892 + (CA)n Simple_repeat Simple_repeat 2 48 0 244 125 25 0 chr11 116855978 116856018 -31927454 + MADE1 DNA Mariner 1 41 -39 2327 82 0 35 chr11 116857093 116857408 -31926064 + AluSg SINE Alu 1 304 -6 306 0 0 0 chr11 116857427 116857461 -31926011 + (TG)n Simple_repeat Simple_repeat 2 35 0 2289 113 3 0 chr11 116858971 116859280 -31924192 - AluSx SINE Alu -1 311 2 345 255 69 97 chr11 116859284 116859429 -31924043 - MIR3 SINE MIR -60 148 8 1476 209 105 54 chr11 116859631 116860030 -31923442 - Charlie1b DNA MER1_type -2252 509 79 2068 130 10 7 chr11 116860030 116860330 -31923142 + AluSx SINE Alu 1 301 -11 1476 209 105 54 chr11 116860330 116860414 -31923058 - Charlie1b DNA MER1_type -2682 79 1 1115 134 5 67 chr11 116860433 116860642 -31922830 + AluJb SINE Alu 86 281 -31 2514 78 0 0 chr11 116861044 116861352 -31922120 + AluY SINE Alu 1 308 -3 1860 98 108 4 chr11 116861372 116861649 -31921823 + AluSc SINE Alu 2 307 -2 2100 122 0 3 chr11 116862142 116862437 -31921035 - AluSx SINE Alu -18 294 1 2102 150 0 3 chr11 116862925 116863238 -31920234 + AluSx SINE Alu 1 312 0 285 275 29 0 chr11 116863318 116863387 -31920085 - L2 LINE L2 -9 3263 3193 799 141 8 16 chr11 116863690 116863818 -31919654 - FLAM_A SINE Alu -2 131 5 271 318 5 24 chr11 116863826 116863956 -31919516 + CT-rich Low_complexity Low_complexity 4 203 0 5613 130 135 18 chr11 116864045 116864256 -31919216 - L1MA4A LINE L1 -5 6298 6113 1837 162 0 14 chr11 116864256 116864546 -31918926 + AluJb SINE Alu 1 286 -26 5613 130 135 18 chr11 116864546 116865081 -31918391 - L1MA4A LINE L1 -190 6113 5642 2280 91 17 3 chr11 116865081 116865377 -31918095 - AluSx SINE Alu -12 300 1 5613 130 135 18 chr11 116865377 116866642 -31916830 - L1MA4A LINE L1 -661 5642 4023 2415 93 0 0 chr11 116866850 116867152 -31916320 + AluSg SINE Alu 1 302 -8 1901 140 0 3 chr11 116868011 116868330 -31915142 + AluJb SINE Alu 1 312 0 189 0 0 0 chr11 116869046 116869067 -31914405 + (T)n Simple_repeat Simple_repeat 1 21 0 1453 142 84 8 chr11 116869261 116869500 -31913972 - AluSx SINE Alu -55 257 1 831 156 0 22 chr11 116869502 116869637 -31913835 - AluJo/FLAM SINE Alu -180 132 1 1841 102 124 0 chr11 116870321 116870596 -31912876 - AluSx SINE Alu -3 309 1 265 105 0 0 chr11 116871157 116871195 -31912277 + AluJb SINE Alu 1 38 -264 5210 103 32 7 chr11 116871195 116871949 -31911523 - LTR17 LTR ERV1 -1 779 7 1727 150 29 0 chr11 116871950 116872224 -31911248 + AluJb SINE Alu 29 310 -2 1791 126 0 0 chr11 116872303 116872549 -31910923 - AluSg SINE Alu -64 246 1 818 204 82 0 chr11 116872800 116872947 -31910525 - MER21B LTR ERV1 -396 467 309 772 145 138 7 chr11 116872948 116873100 -31910372 - AluSg/x SINE Alu -19 290 119 2472 43 0 36 chr11 116873401 116873705 -31909767 + AluY SINE Alu 1 293 -18 916 178 6 6 chr11 116873907 116874076 -31909396 - FRAM SINE Alu -7 169 1 252 0 0 0 chr11 116874795 116874823 -31908649 + (T)n Simple_repeat Simple_repeat 1 28 0 342 194 0 0 chr11 116874826 116874898 -31908574 - LTR12 LTR ERV1 -352 362 291 384 198 47 0 chr11 116875039 116875125 -31908347 - MER46C DNA MER2_type -98 240 151 2135 135 0 3 chr11 116875424 116875720 -31907752 + AluSg SINE Alu 1 295 -15 779 176 8 0 chr11 116875723 116875854 -31907618 + FLAM_C SINE Alu 2 133 0 2490 266 46 34 chr11 116875874 116876615 -31906857 + HAL1 LINE L1 11 760 -1747 343 254 81 60 chr11 116876629 116876679 -31906793 + HAL1 LINE L1 844 891 -1616 189 0 0 0 chr11 116876679 116876700 -31906772 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 343 254 81 60 chr11 116876700 116876834 -31906638 + HAL1 LINE L1 891 1032 -1475 258 176 0 0 chr11 116876847 116876898 -31906574 + (CA)n Simple_repeat Simple_repeat 2 52 0 1384 179 43 43 chr11 116877061 116877362 -31906110 + AluJb SINE Alu 1 301 -11 247 252 123 55 chr11 116877424 116877829 -31905643 - L1MC/D LINE L1 -769 5377 5019 1832 137 16 44 chr11 116877836 116878151 -31905321 - AluJo SINE Alu -6 306 1 2200 125 0 3 chr11 116878186 116878489 -31904983 - AluSx SINE Alu -10 302 1 1111 216 14 58 chr11 116878722 116879075 -31904397 + L1MC5 LINE L1 6659 7102 -940 2017 266 55 39 chr11 116879075 116879563 -31903909 - ERVL LTR ERVL -951 4813 4311 3120 184 14 4 chr11 116879563 116880116 -31903356 - MER68 LTR ERV1 0 562 4 2017 266 55 39 chr11 116880116 116880244 -31903228 - ERVL LTR ERVL -1453 4311 4187 376 313 26 22 chr11 116880310 116880566 -31902906 - ERVL LTR ERVL -21 5368 4787 1182 154 95 101 chr11 116880578 116880631 -31902841 + MLT1D LTR MaLR 41 93 -412 1998 132 10 3 chr11 116880631 116880920 -31902552 + AluSx SINE Alu 1 291 -21 1182 154 95 101 chr11 116880920 116881203 -31902269 + MLT1D LTR MaLR 93 375 -130 216 0 0 0 chr11 116881203 116881227 -31902245 + (T)n Simple_repeat Simple_repeat 1 24 0 1961 168 0 13 chr11 116881247 116881556 -31901916 + AluJb SINE Alu 1 305 -7 433 153 165 0 chr11 116881574 116881659 -31901813 - FRAM SINE Alu -30 146 48 713 122 7 102 chr11 116881659 116881738 -31901734 + MLT1D LTR MaLR 371 431 -74 2567 57 0 0 chr11 116881738 116882058 -31901414 - AluY SINE Alu 0 311 1 713 122 7 102 chr11 116882058 116882125 -31901347 + MLT1D LTR MaLR 431 503 -2 1013 333 61 17 chr11 116882147 116882790 -31900682 - ERVL LTR ERVL -573 5191 4521 1112 325 88 15 chr11 116882811 116883402 -31900070 - ERVL LTR ERVL -1239 4415 3782 374 210 20 11 chr11 116883412 116883518 -31899954 - MER67B LTR ERV1 -4 657 434 685 134 0 0 chr11 116883519 116883616 -31899856 + AluJ/FLAM SINE Alu 2 98 -214 3202 75 18 44 chr11 116883616 116884072 -31899400 + MLT2A1 LTR ERVL 1 444 0 22498 66 10 1 chr11 116884072 116886831 -31896641 + HERVL-A1 LTR ERVL 1 2783 -2871 270 0 0 0 chr11 116886831 116886861 -31896611 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2815 46 0 0 chr11 116886863 116887189 -31896283 - LTR17 LTR ERV1 -454 326 1 2370 72 0 0 chr11 116887189 116887481 -31895991 - HERV17 LTR ERV1 0 8626 8335 289 77 0 0 chr11 116887471 116887510 -31895962 - HERV17 LTR ERV1 -1078 7548 7510 * 4756 77 35 3 chr11 116887503 116888139 -31895333 - HERV17 LTR ERV1 -2607 6019 5364 6170 54 0 5 chr11 116888156 116888896 -31894576 - HERV17 LTR ERV1 -3223 5403 4668 18450 57 15 1 chr11 116888897 116891107 -31892365 + HERVL-A1 LTR ERVL 2776 5016 -638 1299 126 11 5 chr11 116891223 116891414 -31892058 + AluSg/x SINE Alu 118 309 -3 1065 180 24 125 chr11 116891419 116891747 -31891725 - MLT1A1 LTR MaLR -70 295 1 2089 134 7 7 chr11 116891778 116892084 -31891388 - AluSx SINE Alu -3 309 4 256 200 0 20 chr11 116892084 116892134 -31891338 + MER45A DNA AcHobo 86 134 -44 2087 132 3 3 chr11 116892134 116892444 -31891028 - AluSx SINE Alu -2 310 1 2406 94 0 0 chr11 116892457 116892764 -31890708 - AluY SINE Alu -4 307 1 235 178 0 82 chr11 116892764 116892823 -31890649 + MER45 DNA AcHobo 1528 1580 -1 332 271 104 57 chr11 116892823 116893233 -31890239 - L1MDa LINE L1 -4540 2000 1625 1399 151 204 29 chr11 116893305 116893688 -31889784 + LTR7 LTR ERV1 1 450 0 1165 93 0 0 chr11 116893845 116893996 -31889476 + LTR8 LTR ERV1 1 151 -540 600 248 81 6 chr11 116893997 116894158 -31889314 - FAM SINE Alu -1 174 2 261 0 0 0 chr11 116894162 116894191 -31889281 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 738 56 19 0 chr11 116894191 116894298 -31889174 - LTR9B LTR ERV1 -91 553 445 1989 127 7 3 chr11 116894305 116894596 -31888876 - AluSg SINE Alu -18 292 1 998 97 8 15 chr11 116894596 116894730 -31888742 - AluSq/x SINE Alu -177 135 3 4196 92 2 4 chr11 116894733 116895288 -31888184 + LTR8 LTR ERV1 138 691 0 4065 72 24 22 chr11 116895393 116895573 -31887899 - MER41A LTR ERV1 0 554 376 2459 84 0 3 chr11 116895573 116895883 -31887589 - AluSc SINE Alu 0 309 1 4065 72 24 22 chr11 116895883 116896255 -31887217 - MER41A LTR ERV1 -178 376 1 4411 141 30 6 chr11 116896460 116897154 -31886318 + MER50 LTR ERV1 1 711 -23 22 0 0 0 chr11 116897382 116897404 -31886068 + AT_rich Low_complexity Low_complexity 1 22 0 2164 128 3 0 chr11 116897404 116897700 -31885772 + AluSg SINE Alu 1 297 -13 2096 135 0 10 chr11 116897734 116898037 -31885435 - AluSx SINE Alu -12 300 1 278 181 0 14 chr11 116898292 116898364 -31885108 + L1ME4a LINE L1 6047 6117 -4 2206 125 3 0 chr11 116898398 116898695 -31884777 - AluSx SINE Alu -14 298 1 1001 137 67 115 chr11 116898705 116898772 -31884700 + L1MB8 LINE L1 5855 5924 -254 2762 154 41 6 chr11 116898772 116899240 -31884232 - MER66B LTR ERV1 0 486 3 1001 137 67 115 chr11 116899240 116899442 -31884030 + L1MB8 LINE L1 5924 6111 -67 471 127 13 13 chr11 116899442 116899521 -31883951 + MSTB LTR MaLR 1 79 -347 1008 198 0 16 chr11 116899524 116899711 -31883761 - AluJo SINE Alu -128 184 1 330 141 39 39 chr11 116899743 116899821 -31883651 + L1MB8 LINE L1 6101 6178 0 220 179 18 18 chr11 116900174 116900212 -31883260 + (TAA)n Simple_repeat Simple_repeat 1 41 -15 2347 83 0 3 chr11 116900212 116900501 -31882971 + AluSq SINE Alu 1 288 -25 220 179 18 18 chr11 116900501 116900518 -31882954 + (TAA)n Simple_repeat Simple_repeat 40 56 0 221 186 23 0 chr11 116900520 116900563 -31882909 - MIR SINE MIR -28 234 191 877 175 95 14 chr11 116900738 116900949 -31882523 + MER46C DNA MER2_type 13 240 -98 363 194 0 0 chr11 116901090 116901162 -31882310 + LTR12 LTR ERV1 291 362 -352 252 0 0 0 chr11 116901164 116901192 -31882280 + (A)n Simple_repeat Simple_repeat 1 28 0 916 178 6 6 chr11 116901911 116902080 -31881392 + FRAM SINE Alu 1 169 -7 2344 66 0 30 chr11 116902282 116902584 -31880888 - AluY SINE Alu -18 293 1 2225 74 0 37 chr11 116903066 116903364 -31880108 + AluSp SINE Alu 1 287 -26 351 0 0 0 chr11 116903367 116903406 -31880066 + (TAA)n Simple_repeat Simple_repeat 2 40 0 1011 152 0 0 chr11 116903407 116903552 -31879920 + AluSg/x SINE Alu 134 278 -32 189 26 51 26 chr11 116903553 116903592 -31879880 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 35 41 0 0 chr11 116903647 116903696 -31879776 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr11 116903948 116903969 -31879503 + AT_rich Low_complexity Low_complexity 1 21 0 1365 160 7 82 chr11 116904750 116905044 -31878428 + AluJb SINE Alu 4 275 -37 294 283 192 8 chr11 116905335 116905455 -31878017 - MIR3 SINE MIR -62 146 5 1761 166 3 20 chr11 116905999 116906295 -31877177 + AluSx SINE Alu 3 293 -19 1595 167 32 57 chr11 116907872 116908243 -31875229 + MLT1A1 LTR MaLR 4 365 0 1538 292 70 8 chr11 116908337 116908820 -31874652 + LTR33 LTR ERVL 1 513 -8 244 372 37 19 chr11 116908834 116909049 -31874423 + L2 LINE L2 2909 3127 -145 2391 78 0 3 chr11 116909140 116909433 -31874039 - AluSc SINE Alu -13 296 5 2116 126 0 0 chr11 116910220 116910529 -31872943 - AluSq SINE Alu 0 309 1 2248 108 14 0 chr11 116911179 116911476 -31871996 + AluSx SINE Alu 5 305 -7 201 188 0 42 chr11 116911527 116911575 -31871897 + GA-rich Low_complexity Low_complexity 3 48 0 1196 335 145 24 chr11 116911868 116912703 -31870769 + L2 LINE L2 338 1273 -2041 286 326 31 0 chr11 116912995 116913093 -31870379 + L2 LINE L2 3172 3272 0 482 316 65 44 chr11 116913332 116913494 -31869978 + MERVL LTR ERVL 2820 2977 -2508 2174 96 3 26 chr11 116913494 116913797 -31869675 - AluSp SINE Alu -4 309 14 482 316 65 44 chr11 116913797 116913973 -31869499 + MERVL LTR ERVL 2977 3165 -2320 189 0 0 0 chr11 116914206 116914227 -31869245 + (A)n Simple_repeat Simple_repeat 1 21 0 199 235 44 59 chr11 116914575 116914643 -31868829 - L2 LINE L2 -214 3058 2992 2342 81 3 3 chr11 116915188 116915497 -31867975 - AluY SINE Alu -2 309 1 716 145 43 0 chr11 116915573 116915711 -31867761 - L1MA6 LINE L1 0 6300 6157 3130 83 57 2 chr11 116915882 116916337 -31867135 + L1PA13 LINE L1 5684 6163 0 1941 309 75 31 chr11 116916388 116916913 -31866559 - HERV16 LTR ERVL -1944 3052 2864 2385 99 0 3 chr11 116916913 116917225 -31866247 - AluSx SINE Alu 0 312 2 1941 309 75 31 chr11 116917225 116917937 -31865535 - HERV16 LTR ERVL -2132 2864 2184 318 137 0 7 chr11 116917938 116918006 -31865466 + L1PA12 LINE L1 5955 6019 -149 1529 152 74 13 chr11 116918038 116918347 -31865125 - Tigger3(Golem) DNA MER2_type -1 3028 2701 4149 119 52 160 chr11 116918663 116919210 -31864262 - Tigger3b DNA MER2_type -1798 1230 625 907 144 0 27 chr11 116919210 116919356 -31864116 + FLAM_C SINE Alu 1 142 -1 4149 119 52 160 chr11 116919356 116919722 -31863750 - Tigger3b DNA MER2_type -2403 625 318 2237 102 118 38 chr11 116919722 116920122 -31863350 + MSTB1 LTR MaLR 1 432 0 4149 119 52 160 chr11 116920122 116920279 -31863193 - Tigger3b DNA MER2_type -2710 318 146 593 194 172 0 chr11 116920385 116920519 -31862953 - Tigger3b DNA MER2_type -1074 157 1 2809 254 70 45 chr11 116920519 116920857 -31862615 - HERV16 LTR ERVL -2858 2138 1810 2464 77 0 0 chr11 116920857 116921157 -31862315 - AluY SINE Alu -11 300 1 2809 254 70 45 chr11 116921157 116921355 -31862117 - HERV16 LTR ERVL -3186 1810 1618 2197 114 0 0 chr11 116921355 116921654 -31861818 - AluSx SINE Alu -13 299 1 2809 254 70 45 chr11 116921654 116921686 -31861786 - HERV16 LTR ERVL -3378 1618 1588 1774 150 28 133 chr11 116921686 116922146 -31861326 - MLT2D LTR ERVL 0 414 3 2809 254 70 45 chr11 116922146 116922567 -31860905 - HERV16 LTR ERVL -3408 1588 1123 2257 123 9 20 chr11 116922577 116922918 -31860554 + MER1B DNA MER1_type 1 337 0 2009 138 3 10 chr11 116922955 116923260 -31860212 + AluSq SINE Alu 1 303 -10 1940 152 7 0 chr11 116923508 116923798 -31859674 - AluSx SINE Alu -20 292 1 272 27 27 0 chr11 116924531 116924568 -31858904 + (TTTTTG)n Simple_repeat Simple_repeat 4 41 0 28 79 0 0 chr11 116925040 116925103 -31858369 + AT_rich Low_complexity Low_complexity 1 63 0 304 200 77 0 chr11 116925112 116925177 -31858295 + AluJ/FLAM SINE Alu 1 70 -232 27 0 0 0 chr11 116925202 116925229 -31858243 + AT_rich Low_complexity Low_complexity 1 27 0 251 137 20 0 chr11 116925353 116925404 -31858068 - Alu SINE Alu -248 52 1 1422 178 29 0 chr11 116925671 116925912 -31857560 + AluJo SINE Alu 21 268 -44 1635 163 27 17 chr11 116925922 116926222 -31857250 + AluJo SINE Alu 1 303 -9 1779 187 7 0 chr11 116927381 116927680 -31855792 + AluJb SINE Alu 5 305 -7 267 172 35 17 chr11 116928653 116928711 -31854761 - MLT1H LTR MaLR -58 491 433 292 366 8 0 chr11 116928855 116928989 -31854483 - MLT1H LTR MaLR -322 227 93 1733 87 0 0 chr11 116928996 116929215 -31854257 - AluSg/x SINE Alu 0 310 92 2064 150 3 0 chr11 116929316 116929622 -31853850 - AluSx SINE Alu -5 307 1 3646 169 50 48 chr11 116929642 116929680 -31853792 + L1MB7 LINE L1 5272 5308 -876 1650 179 7 0 chr11 116929680 116929960 -31853512 + AluJb SINE Alu 1 282 -30 336 24 0 0 chr11 116929963 116930004 -31853468 + (CA)n Simple_repeat Simple_repeat 1 41 0 3646 169 50 48 chr11 116930004 116930140 -31853332 + L1MB7 LINE L1 5309 5443 -741 1598 206 11 3 chr11 116930140 116930422 -31853050 + AluJo SINE Alu 13 296 -16 3646 169 50 48 chr11 116930422 116931073 -31852399 + L1MB7 LINE L1 5443 6107 -77 2341 86 3 10 chr11 116931073 116931374 -31852098 - AluSx SINE Alu 0 312 14 3646 169 50 48 chr11 116931374 116931444 -31852028 + L1MB7 LINE L1 6107 6175 -9 1793 203 107 10 chr11 116931444 116931947 -31851525 - Tigger6a DNA MER2_type -274 809 258 25 0 0 0 chr11 116931966 116931991 -31851481 + AT_rich Low_complexity Low_complexity 1 25 0 1333 165 54 31 chr11 116931991 116932251 -31851221 - AluJo SINE Alu -23 289 24 816 243 95 0 chr11 116932261 116932483 -31850989 - Tigger6a DNA MER2_type -840 243 1 21 57 0 0 chr11 116932787 116932822 -31850650 + AT_rich Low_complexity Low_complexity 1 35 0 476 337 129 8 chr11 116933294 116933659 -31849813 - MLT1J LTR MaLR -18 493 85 1492 190 33 0 chr11 116934160 116934434 -31849038 - AluJo SINE Alu -29 283 1 2042 113 25 0 chr11 116934629 116934911 -31848561 - AluSp SINE Alu -14 299 11 520 236 230 6 chr11 116934912 116935086 -31848386 - MIR SINE MIR -35 227 15 397 298 48 12 chr11 116935088 116935256 -31848216 + L2 LINE L2 2646 2819 -495 1647 201 10 14 chr11 116935295 116935584 -31847888 + AluJo SINE Alu 1 288 -24 2082 149 0 0 chr11 116935606 116935908 -31847564 + AluSx SINE Alu 1 302 -10 238 270 95 0 chr11 116936013 116936087 -31847385 - L2 LINE L2 -214 3058 2978 1949 147 3 10 chr11 116936147 116936453 -31847019 + AluSx SINE Alu 1 304 -8 219 205 0 0 chr11 116936691 116936730 -31846742 - MIR SINE MIR -6 256 218 2391 98 0 3 chr11 116936777 116937084 -31846388 + AluSq SINE Alu 1 306 -7 2193 107 23 0 chr11 116937097 116937396 -31846076 + AluSq SINE Alu 5 310 -3 557 278 175 4 chr11 116937424 116937658 -31845814 - LTR16B LTR ERVL -53 411 138 1737 152 24 3 chr11 116937877 116938033 -31845439 - AluJo SINE Alu -17 295 129 2210 134 0 0 chr11 116938033 116938339 -31845133 - AluSx SINE Alu -6 306 1 1737 152 24 3 chr11 116938339 116938471 -31845001 - AluJo SINE Alu -183 129 1 1096 168 67 0 chr11 116938941 116939179 -31844293 + L1MB4 LINE L1 5894 6147 -33 1487 152 4 0 chr11 116939387 116939656 -31843816 - L1 LINE L1 -2385 5180 4911 27 0 0 0 chr11 116939658 116939685 -31843787 + AT_rich Low_complexity Low_complexity 1 27 0 2339 74 7 0 chr11 116939685 116939970 -31843502 - AluY SINE Alu -21 290 4 3097 143 19 12 chr11 116940015 116940531 -31842941 - L1 LINE L1 -7022 543 24 311 136 6 3 chr11 116940531 116940596 -31842876 - FLAM_A SINE Alu 0 133 81 2196 88 3 17 chr11 116940709 116941004 -31842468 + AluY SINE Alu 1 291 -20 209 289 167 22 chr11 116941354 116941444 -31842028 - L2 LINE L2 -21 3251 3149 259 346 67 29 chr11 116941547 116941651 -31841821 + L2 LINE L2 3143 3250 -22 543 304 92 18 chr11 116941687 116941904 -31841568 + MIR SINE MIR 29 261 -1 594 233 101 41 chr11 116942048 116942267 -31841205 + MER112 DNA MER1_type 29 260 0 2309 83 36 3 chr11 116942568 116942869 -31840603 - AluSp SINE Alu -2 311 1 246 32 0 0 chr11 116942960 116942991 -31840481 + (TTTTG)n Simple_repeat Simple_repeat 5 35 0 606 207 16 0 chr11 116942991 116943112 -31840360 - AluJb SINE Alu -32 280 158 23 0 0 0 chr11 116943229 116943252 -31840220 + AT_rich Low_complexity Low_complexity 1 23 0 1604 164 13 61 chr11 116943626 116943938 -31839534 + AluJo SINE Alu 1 297 -15 194 319 185 0 chr11 116943998 116944117 -31839355 + L2 LINE L2 2807 2947 -366 412 264 58 86 chr11 116944229 116944403 -31839069 + L2 LINE L2 3104 3272 0 1309 169 0 9 chr11 116945920 116946133 -31837339 - AluJb SINE Alu -21 291 81 1671 160 13 26 chr11 116946198 116946504 -31836968 - AluJb SINE Alu -10 302 1 1881 162 3 10 chr11 116946554 116946856 -31836616 + AluJb SINE Alu 10 309 -3 1411 163 78 3 chr11 116947188 116947495 -31835977 + L1MA6 LINE L1 5971 6300 0 2331 89 0 19 chr11 116947571 116947884 -31835588 + AluSc SINE Alu 1 307 -2 2351 103 6 3 chr11 116948010 116948321 -31835151 + AluSp SINE Alu 1 312 -1 962 282 60 0 chr11 116948410 116948676 -31834796 - L2 LINE L2 -489 2825 2544 1375 180 75 12 chr11 116949051 116949306 -31834166 - AluJo SINE Alu -41 271 1 1349 192 159 66 chr11 116949389 116949503 -31833969 - L1MA9 LINE L1 -114 6198 6096 1911 142 9 25 chr11 116949503 116949820 -31833652 - AluJo SINE Alu 0 312 1 1349 192 159 66 chr11 116949820 116950232 -31833240 - L1MA9 LINE L1 -216 6096 5623 1820 262 116 24 chr11 116950232 116950846 -31832626 - L2 LINE L2 -768 2546 1877 2006 115 62 3 chr11 116950851 116951139 -31832333 + AluSx SINE Alu 1 305 -7 2158 117 0 13 chr11 116951149 116951447 -31832025 + AluSx SINE Alu 1 294 -18 24 67 0 0 chr11 116951599 116951644 -31831828 + AT_rich Low_complexity Low_complexity 1 45 0 28 0 0 0 chr11 116951871 116951899 -31831573 + AT_rich Low_complexity Low_complexity 1 28 0 2246 114 0 7 chr11 116952593 116952892 -31830580 - AluSx SINE Alu -15 297 1 1031 232 49 34 chr11 116953088 116953415 -31830057 - L1ME2 LINE L1 -10 6154 5823 698 218 52 44 chr11 116953414 116953643 -31829829 - L1ME2 LINE L1 -588 5576 5346 * 1358 177 35 4 chr11 116953644 116953876 -31829596 - AluJo SINE Alu -73 239 1 2118 116 0 0 chr11 116953885 116954169 -31829303 - AluSc SINE Alu -14 295 12 2121 115 7 10 chr11 116954271 116954575 -31828897 - AluSq SINE Alu -8 305 3 2466 174 17 0 chr11 116954575 116955046 -31828426 + L1MA3 LINE L1 3747 4225 -1921 1642 121 10 28 chr11 116955044 116955334 -31828138 + L1MA3 LINE L1 5432 5716 -589 * 226 135 54 61 chr11 116955344 116955428 -31828044 + (TTATA)n Simple_repeat Simple_repeat 4 87 -63 598 14 0 0 chr11 116955428 116955502 -31827970 - L1PA4 LINE L1 -3 6152 6079 3450 104 31 36 chr11 116955502 116955858 -31827614 + L1MA3 LINE L1 5694 6052 -253 2333 89 3 13 chr11 116955858 116956171 -31827301 + AluSp SINE Alu 1 310 -3 3450 104 31 36 chr11 116956171 116956416 -31827056 + L1MA3 LINE L1 6052 6297 -8 226 135 54 61 chr11 116956416 116956478 -31826994 + (TTATA)n Simple_repeat Simple_repeat 85 150 0 24 53 0 0 chr11 116956478 116956516 -31826956 + AT_rich Low_complexity Low_complexity 1 38 0 225 284 153 40 chr11 116956596 116956772 -31826700 + L1ME LINE L1 5504 5699 -422 1527 135 98 49 chr11 116956909 116957086 -31826386 + THE1B LTR MaLR 1 168 -196 198 0 0 0 chr11 116957086 116957108 -31826364 + (TC)n Simple_repeat Simple_repeat 1 22 0 1527 135 98 49 chr11 116957108 116957277 -31826195 + THE1B LTR MaLR 168 364 0 21 0 0 0 chr11 116957306 116957327 -31826145 + AT_rich Low_complexity Low_complexity 1 21 0 227 264 0 42 chr11 116957337 116957409 -31826063 + GA-rich Low_complexity Low_complexity 5 73 0 273 161 0 69 chr11 116957435 116957522 -31825950 + L1MC5 LINE L1 7833 7913 -48 241 194 0 97 chr11 116958039 116958101 -31825371 + L2 LINE L2 3258 3313 0 2185 92 27 3 chr11 116958154 116958449 -31825023 - AluSx SINE Alu -10 302 1 22 0 0 0 chr11 116958795 116958817 -31824655 + AT_rich Low_complexity Low_complexity 1 22 0 453 299 62 31 chr11 116959023 116959104 -31824368 - MIR SINE MIR -29 233 156 2271 83 0 23 chr11 116959104 116959406 -31824066 - AluSg SINE Alu -15 295 1 453 299 62 31 chr11 116959406 116959548 -31823924 - MIR SINE MIR -106 156 3 326 282 141 0 chr11 116959658 116959743 -31823729 + L2 LINE L2 3168 3264 -8 976 194 0 0 chr11 116959826 116959996 -31823476 + FAM SINE Alu 1 170 -5 324 274 53 21 chr11 116960263 116960358 -31823114 + L2 LINE L2 2960 3057 -256 2243 116 0 0 chr11 116960455 116960756 -31822716 + AluY SINE Alu 1 301 -10 2445 87 0 0 chr11 116960772 116961072 -31822400 - AluSg SINE Alu -10 300 1 1926 216 77 26 chr11 116961134 116961672 -31821800 - L1MD2 LINE L1 -83 7725 6163 1038 178 23 0 chr11 116961674 116961848 -31821624 + AluJo SINE Alu 2 179 -133 1398 164 22 116 chr11 116962922 116963070 -31820402 + AluJo SINE Alu 1 105 -207 2112 134 0 0 chr11 116963070 116963368 -31820104 + AluSx SINE Alu 1 298 -14 1398 164 22 116 chr11 116963368 116963537 -31819935 + AluJo SINE Alu 105 288 -24 21 0 0 0 chr11 116963537 116963558 -31819914 + AT_rich Low_complexity Low_complexity 1 21 0 344 298 0 11 chr11 116963604 116963698 -31819774 - MER82 DNA MER2_type -560 93 1 23 0 0 0 chr11 116963790 116963813 -31819659 + AT_rich Low_complexity Low_complexity 1 23 0 1161 161 9 37 chr11 116964813 116964862 -31818610 + AluJb SINE Alu 89 138 -174 1962 147 24 0 chr11 116964862 116965155 -31818317 + AluSx SINE Alu 8 307 -5 1161 161 9 37 chr11 116965155 116965322 -31818150 + AluJb SINE Alu 138 299 -13 210 317 49 12 chr11 116965692 116965774 -31817698 - L2 LINE L2 -158 3114 3030 445 142 0 15 chr11 116966439 116966672 -31816800 + AluJo SINE Alu 1 286 -26 1512 188 3 21 chr11 116966755 116967042 -31816430 + AluJb SINE Alu 26 307 -5 247 289 44 0 chr11 116967092 116967182 -31816290 + MIR SINE MIR 120 213 -49 710 283 49 20 chr11 116967442 116967686 -31815786 - MIR SINE MIR 0 262 12 2062 128 6 10 chr11 116968333 116968645 -31814827 + AluSx SINE Alu 1 311 -1 1933 153 145 55 chr11 116969225 116969359 -31814113 + L1MB7 LINE L1 5645 5766 -418 1955 151 6 6 chr11 116969359 116969671 -31813801 + AluJo SINE Alu 1 312 0 1933 153 145 55 chr11 116969671 116970013 -31813459 + L1MB7 LINE L1 5766 6164 -20 1739 127 75 0 chr11 116970125 116970377 -31813095 - AluSx SINE Alu -41 271 1 1894 150 7 16 chr11 116970378 116970684 -31812788 - AluJb SINE Alu 0 312 10 7826 112 24 11 chr11 116970730 116971894 -31811578 - Tigger1 DNA MER2_type -72 2346 1168 718 150 204 14 chr11 116971894 116972041 -31811431 - AluSg/x SINE Alu -7 305 131 3674 107 30 0 chr11 116972041 116972567 -31810905 - Tigger1 DNA MER2_type -1241 1177 636 546 308 19 0 chr11 116972571 116972727 -31810745 - LTR16A LTR ERVL -288 162 4 706 215 97 28 chr11 116972729 116972824 -31810648 + L1MC5 LINE L1 7490 7577 -384 1952 139 21 0 chr11 116972824 116973111 -31810361 + AluJo SINE Alu 1 293 -19 706 215 97 28 chr11 116973111 116973262 -31810210 + L1MC5 LINE L1 7577 7753 -208 2251 163 63 57 chr11 116973324 116973784 -31809688 + MLT1D LTR MaLR 1 463 -42 1741 146 48 10 chr11 116973785 116974080 -31809392 - AluJb SINE Alu -6 306 1 241 245 10 31 chr11 116974130 116974228 -31809244 - L1M4 LINE L1 -1486 4660 4565 1492 155 95 7 chr11 116974434 116974718 -31808754 + AluJb SINE Alu 1 309 -3 2198 128 0 0 chr11 116975040 116975344 -31808128 + AluSx SINE Alu 1 304 -8 1906 86 89 0 chr11 116975638 116975927 -31807545 + AluSg SINE Alu 2 313 0 33 25 0 0 chr11 116975962 116976002 -31807470 + AT_rich Low_complexity Low_complexity 1 40 0 2058 125 7 0 chr11 116976948 116977243 -31806229 + AluSp SINE Alu 1 297 -16 1992 152 3 0 chr11 116977411 116977713 -31805759 - AluJb SINE Alu -9 303 1 25 51 0 0 chr11 116977741 116977780 -31805692 + AT_rich Low_complexity Low_complexity 1 39 0 1192 259 79 11 chr11 116978061 116978416 -31805056 + L2 LINE L2 333 711 -2603 1044 107 0 0 chr11 116978416 116978556 -31804916 + AluSg/x SINE Alu 168 307 -5 525 321 82 36 chr11 116978573 116978962 -31804510 - LTR16C LTR ERVL 0 491 85 1930 236 97 86 chr11 116979078 116979146 -31804326 + L2 LINE L2 719 785 -2529 198 0 0 0 chr11 116979146 116979168 -31804304 + (TC)n Simple_repeat Simple_repeat 2 23 0 2073 122 3 0 chr11 116979168 116979456 -31804016 - AluSx SINE Alu -23 289 1 1930 236 97 86 chr11 116979456 116980324 -31803148 + L2 LINE L2 784 1666 -1648 638 229 114 0 chr11 116980481 116980656 -31802816 + Tigger6 DNA MER2_type 1390 1584 -13 2219 98 0 10 chr11 116980981 116981286 -31802186 - AluY SINE Alu -9 302 1 2187 129 0 0 chr11 116981440 116981735 -31801737 - AluSx SINE Alu -17 295 1 784 237 41 6 chr11 116983077 116983246 -31800226 - MER96 DNA MER1_type 0 175 1 380 235 0 100 chr11 116983250 116983480 -31799992 - Charlie2 DNA MER1_type -81 2781 2575 2164 115 0 10 chr11 116983509 116983813 -31799659 - AluSq SINE Alu -12 301 1 22 0 0 0 chr11 116983877 116983899 -31799573 + AT_rich Low_complexity Low_complexity 1 22 0 372 161 16 0 chr11 116983938 116984000 -31799472 - AluYb8 SINE Alu -128 180 118 * 1092 203 154 47 chr11 116983983 116984471 -31799001 - Charlie2 DNA MER1_type -354 2508 1969 307 169 92 15 chr11 116984554 116984619 -31798853 - Charlie2 DNA MER1_type -920 1942 1873 943 262 68 17 chr11 116984637 116984931 -31798541 - Charlie2 DNA MER1_type -2538 324 16 620 204 0 9 chr11 116985052 116985165 -31798307 - FLAM_A SINE Alu -11 131 20 450 255 111 37 chr11 116985166 116985437 -31798035 - L1MEc LINE L1 -4881 2241 1951 1770 163 30 52 chr11 116985513 116985882 -31797590 - L1MB8 LINE L1 -4 6174 5814 3186 185 40 50 chr11 116985910 116986479 -31796993 - L1MB4 LINE L1 -30 6150 5588 848 59 0 0 chr11 116986479 116986580 -31796892 - HY3 scRNA scRNA 0 101 1 3186 185 40 50 chr11 116986580 116986738 -31796734 - L1MB4 LINE L1 -592 5588 5430 301 317 48 0 chr11 116986736 116986903 -31796569 - L1MEc LINE L1 -4959 1464 1290 * 1633 73 59 9 chr11 116987392 116987611 -31795861 + MER30 DNA MER1_type 1 230 0 1575 182 50 4 chr11 116987704 116987984 -31795488 - AluJo SINE Alu -19 293 1 482 256 75 12 chr11 116988055 116988215 -31795257 + L1MC/D LINE L1 5618 5787 -2021 3536 211 79 81 chr11 116988260 116988566 -31794906 + L1M4 LINE L1 4015 4320 -1826 1634 170 62 0 chr11 116988566 116988854 -31794618 + AluJo SINE Alu 1 306 -6 3536 211 79 81 chr11 116988854 116988916 -31794556 + L1M4 LINE L1 4320 4381 -1765 1718 186 19 3 chr11 116988916 116989223 -31794249 + AluJb SINE Alu 1 312 0 3536 211 79 81 chr11 116989223 116989731 -31793741 + L1M4 LINE L1 4381 4889 -1257 2387 72 0 0 chr11 116989731 116990021 -31793451 - AluY SINE Alu -20 291 2 3536 211 79 81 chr11 116990021 116990187 -31793285 + L1M4 LINE L1 4889 5054 -1092 2190 113 0 7 chr11 116990187 116990489 -31792983 - AluSx SINE Alu -12 300 1 3536 211 79 81 chr11 116990489 116990502 -31792970 + L1M4 LINE L1 5054 5066 -1080 342 0 0 0 chr11 116990502 116990540 -31792932 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 3536 211 79 81 chr11 116990540 116990786 -31792686 + L1M4 LINE L1 5066 5317 -829 1399 207 44 11 chr11 116990927 116991079 -31792393 - AluJo SINE Alu -30 282 116 282 73 0 0 chr11 116991079 116991120 -31792352 + (TTTTA)n Simple_repeat Simple_repeat 2 42 0 1399 207 44 11 chr11 116991120 116991238 -31792234 - AluJo SINE Alu -196 116 3 1008 180 0 0 chr11 116991238 116991405 -31792067 - FRAM SINE Alu -11 165 1 192 125 0 0 chr11 116991413 116991445 -31792027 + (TCTA)n Simple_repeat Simple_repeat 3 34 0 574 156 135 0 chr11 116991447 116991543 -31791929 - FLAM_C SINE Alu -21 122 14 514 171 34 0 chr11 116992195 116992283 -31791189 + FRAM SINE Alu 65 155 -21 486 213 34 94 chr11 116992294 116992391 -31791081 - L1MB4 LINE L1 -830 5316 5215 2022 118 23 20 chr11 116992391 116992695 -31790777 + AluSx SINE Alu 1 305 -7 486 213 34 94 chr11 116992695 116992832 -31790640 - L1MB4 LINE L1 -931 5215 5096 351 279 57 50 chr11 116993554 116993694 -31789778 + MIR SINE MIR 8 148 -114 844 204 6 51 chr11 116993695 116993872 -31789600 + FRAM SINE Alu 1 170 0 297 218 90 0 chr11 116993875 116993953 -31789519 + MIR SINE MIR 148 232 -30 423 267 60 27 chr11 116994277 116994427 -31789045 + L2 LINE L2 824 978 -2336 308 259 82 7 chr11 116994438 116994573 -31788899 - L1MDa LINE L1 -4915 1300 1156 2457 272 49 17 chr11 116994585 116995406 -31788066 - L1MDa LINE L1 -5400 996 150 349 203 0 0 chr11 116995412 116995481 -31787991 - L1MDa LINE L1 -6293 103 35 4582 279 108 38 chr11 116995481 116996134 -31787338 + L2 LINE L2 975 1580 -1733 2328 97 0 0 chr11 116996134 116996433 -31787039 + AluSg SINE Alu 1 299 -11 4582 279 108 38 chr11 116996433 116996548 -31786924 + L2 LINE L2 1580 1685 -1628 1546 129 115 31 chr11 116996548 116996699 -31786773 - AluJb SINE Alu -1 311 174 2067 131 7 0 chr11 116996699 116996997 -31786475 - AluSx SINE Alu -12 300 1 1546 129 115 31 chr11 116996997 116997132 -31786340 - AluJb SINE Alu -138 174 1 4582 279 108 38 chr11 116997132 116997982 -31785490 + L2 LINE L2 1685 2743 -570 2067 107 45 0 chr11 116997982 116998271 -31785201 + AluSg SINE Alu 1 302 -8 4582 279 108 38 chr11 116998271 116998549 -31784923 + L2 LINE L2 2743 3000 -313 21 0 0 0 chr11 116999329 116999350 -31784122 + AT_rich Low_complexity Low_complexity 1 21 0 2302 102 3 0 chr11 116999781 117000084 -31783388 + AluSp SINE Alu 1 304 -9 228 331 17 83 chr11 117000190 117000371 -31783101 + MER5A DNA MER1_type 3 171 -18 * 318 356 27 14 chr11 117000252 117000398 -31783074 - MER5A DNA MER1_type -41 148 1 2009 143 10 0 chr11 117000513 117000806 -31782666 + AluSx SINE Alu 3 298 -14 1524 170 21 7 chr11 117000848 117001130 -31782342 - L1P LINE L1 -1122 5024 4739 3841 67 31 0 chr11 117001130 117001606 -31781866 + L1PA12 LINE L1 5674 6168 0 1832 163 0 3 chr11 117001659 117001953 -31781519 + AluJo SINE Alu 10 302 -10 189 0 0 0 chr11 117002007 117002028 -31781444 + (TC)n Simple_repeat Simple_repeat 2 22 0 417 269 55 28 chr11 117002053 117002290 -31781182 - L1M4 LINE L1 -2302 3844 3600 1222 255 43 58 chr11 117002391 117002729 -31780743 - MER77 LTR ERV1 -6 599 277 2665 176 82 10 chr11 117003461 117003962 -31779510 - MER68 LTR ERV1 -4 558 22 8159 207 62 40 chr11 117003964 117004880 -31778592 - HERVL68 LTR ERVL -662 2375 1480 1669 141 10 61 chr11 117004880 117005193 -31778279 + AluJo SINE Alu 1 297 -15 8159 207 62 40 chr11 117005193 117005905 -31777567 - HERVL68 LTR ERVL -1557 1480 785 1951 144 7 3 chr11 117005905 117006204 -31777268 - AluSq SINE Alu -13 300 1 8159 207 62 40 chr11 117006204 117006792 -31776680 - HERVL68 LTR ERVL -2252 785 31 2649 227 21 2 chr11 117006816 117007349 -31776123 - MER68 LTR ERV1 0 562 20 2090 115 45 0 chr11 117007831 117008119 -31775353 + AluSq SINE Alu 1 301 -12 2223 104 17 0 chr11 117008371 117008669 -31774803 - AluSx SINE Alu 0 312 10 336 283 150 18 chr11 117008688 117008801 -31774671 - MIR SINE MIR -125 137 10 234 246 63 114 chr11 117008830 117009005 -31774467 - MER5B DNA MER1_type -6 172 7 2316 94 3 3 chr11 117009176 117009475 -31773997 - AluSp SINE Alu -14 299 1 310 263 67 31 chr11 117009514 117009708 -31773764 - L1ME4a LINE L1 -82 6039 5839 384 148 0 0 chr11 117009765 117009826 -31773646 + LTR64 LTR ERVK 15 75 -483 1729 176 23 20 chr11 117009866 117010172 -31773300 + AluSx SINE Alu 6 312 0 321 268 52 66 chr11 117010420 117010525 -31772947 - L1MC4 LINE L1 -1 8041 7936 294 29 0 0 chr11 117010525 117010560 -31772912 + (TA)n Simple_repeat Simple_repeat 1 35 0 2374 87 0 3 chr11 117010561 117010860 -31772612 - AluSq SINE Alu -15 298 1 321 268 52 66 chr11 117010860 117010965 -31772507 - L1MC4 LINE L1 -105 7937 7832 690 188 55 0 chr11 117011029 117011157 -31772315 - AluJo SINE Alu -177 135 1 493 215 19 0 chr11 117011157 117011264 -31772208 - L1ME2 LINE L1 -33 6131 6023 21 71 0 0 chr11 117011331 117011373 -31772099 + AT_rich Low_complexity Low_complexity 1 42 0 297 313 115 11 chr11 117011378 117011560 -31771912 - L2 LINE L2 -2269 1045 845 2168 84 37 3 chr11 117011688 117011985 -31771487 - AluSx SINE Alu -1 311 5 242 62 0 0 chr11 117011989 117012021 -31771451 - Alu SINE Alu -269 32 1 243 349 24 0 chr11 117012085 117012168 -31771304 + L2 LINE L2 3179 3263 -50 306 225 146 0 chr11 117012464 117012553 -31770919 - FLAM_C SINE Alu 0 133 32 194 267 0 0 chr11 117012617 117012662 -31770810 - L2 LINE L2 -7 3265 3221 298 86 3 0 chr11 117014173 117014217 -31769255 + MADE1 DNA Mariner 42 80 0 487 268 184 16 chr11 117014430 117014620 -31768852 + MIR SINE MIR 28 249 -13 423 176 0 0 chr11 117014752 117014820 -31768652 + AluJ/FLAM SINE Alu 2 69 -243 246 195 0 0 chr11 117014876 117014917 -31768555 + Alu SINE Alu 210 250 -52 2371 86 0 19 chr11 117015547 117015860 -31767612 - AluSc SINE Alu -2 307 1 2286 104 0 3 chr11 117016532 117016830 -31766642 - AluSq SINE Alu -16 297 1 656 179 114 0 chr11 117017721 117017844 -31765628 + FLAM_C SINE Alu 2 138 -5 795 294 36 30 chr11 117018656 117018833 -31764639 - L2 LINE L2 -69 3244 3063 2189 124 0 0 chr11 117018833 117019132 -31764340 - AluSx SINE Alu -13 299 1 795 294 36 30 chr11 117019132 117019287 -31764185 - L2 LINE L2 -250 3063 2910 1614 173 39 7 chr11 117019850 117020134 -31763338 - AluJb SINE Alu -5 307 15 204 40 0 0 chr11 117020161 117020186 -31763286 + (TTCTC)n Simple_repeat Simple_repeat 1 25 0 1283 204 66 7 chr11 117020189 117020478 -31762994 - AluJb SINE Alu -1 311 6 700 183 76 0 chr11 117020613 117020744 -31762728 + FLAM_C SINE Alu 2 142 -1 651 173 87 16 chr11 117020785 117020912 -31762560 + AluJo SINE Alu 2 137 -175 253 322 66 62 chr11 117020980 117021040 -31762432 - L2 LINE L2 -1 3312 3254 1877 161 7 10 chr11 117021040 117021344 -31762128 + AluJb SINE Alu 1 303 -9 253 322 66 62 chr11 117021344 117021494 -31761978 - L2 LINE L2 -59 3254 3101 1945 155 10 0 chr11 117021501 117021791 -31761681 + AluJo SINE Alu 1 293 -19 243 208 94 30 chr11 117022045 117022207 -31761265 - L2 LINE L2 -224 3089 2866 398 247 0 0 chr11 117022245 117022318 -31761154 - MER2 DNA MER2_type 0 345 273 2062 120 0 27 chr11 117022318 117022617 -31760855 + AluSx SINE Alu 1 291 -21 911 84 76 0 chr11 117022717 117022836 -31760636 + AluSg/x SINE Alu 107 234 -76 595 238 79 46 chr11 117022893 117023147 -31760325 + MLT1J LTR MaLR 52 282 -164 2244 118 0 0 chr11 117023186 117023483 -31759989 - AluSx SINE Alu -15 297 1 2470 80 0 0 chr11 117023704 117024006 -31759466 - AluY SINE Alu -9 302 1 243 308 120 0 chr11 117024556 117024673 -31758799 + MIR SINE MIR 16 146 -62 652 123 27 12 chr11 117024682 117024897 -31758575 + AluJo SINE Alu 11 296 -16 2221 109 0 19 chr11 117025174 117025485 -31757987 - AluSx SINE Alu -7 305 1 405 161 313 18 chr11 117026020 117026132 -31757340 - MER103 DNA DNA -20 146 2 2101 112 3 10 chr11 117026311 117026605 -31756867 - AluSc SINE Alu -17 292 1 1882 153 7 0 chr11 117026745 117027039 -31756433 + AluSx SINE Alu 14 309 -3 25 0 0 0 chr11 117027203 117027228 -31756244 + AT_rich Low_complexity Low_complexity 1 25 0 2460 55 16 29 chr11 117027659 117027971 -31755501 - AluY SINE Alu -3 308 1 2041 125 0 7 chr11 117028032 117028320 -31755152 - AluSx SINE Alu -10 302 17 1985 147 0 19 chr11 117028530 117028843 -31754629 - AluJb SINE Alu 0 312 6 2456 76 10 0 chr11 117028912 117029215 -31754257 - AluSx SINE Alu -6 306 1 1353 74 0 0 chr11 117029594 117029756 -31753716 + AluSg/x SINE Alu 133 294 -16 1671 164 33 46 chr11 117029856 117030161 -31753311 + AluJo SINE Alu 1 301 -11 1540 109 0 50 chr11 117030335 117030573 -31752899 - AluSg/x SINE Alu -3 309 84 3480 122 53 31 chr11 117031040 117031097 -31752375 + MER41C LTR ERV1 1 55 -499 2153 117 27 0 chr11 117031097 117031395 -31752077 + AluSx SINE Alu 2 307 -5 3480 122 53 31 chr11 117031395 117031619 -31751853 + MER41C LTR ERV1 55 273 -281 2405 87 0 6 chr11 117031619 117031931 -31751541 + AluY SINE Alu 1 310 -1 3480 122 53 31 chr11 117031931 117032190 -31751282 + MER41C LTR ERV1 273 554 0 2500 78 0 3 chr11 117032343 117032649 -31750823 - AluSq SINE Alu -8 305 1 1747 169 10 29 chr11 117032840 117033148 -31750324 - AluJo SINE Alu -10 302 1 536 197 109 0 chr11 117033178 117033315 -31750157 + MER103 DNA DNA 13 164 -2 2154 86 72 0 chr11 117033338 117033617 -31749855 + AluSq SINE Alu 1 299 -14 1997 125 37 7 chr11 117033627 117033923 -31749549 + AluSx SINE Alu 6 310 -2 333 0 0 0 chr11 117033943 117033980 -31749492 + (CA)n Simple_repeat Simple_repeat 2 38 0 1684 152 11 7 chr11 117034308 117034578 -31748894 + AluSg SINE Alu 26 296 -14 312 306 100 29 chr11 117034821 117034991 -31748481 + MLT1J LTR MaLR 292 473 -38 2001 143 19 10 chr11 117035131 117035438 -31748034 + AluJb SINE Alu 1 310 -2 2364 74 3 19 chr11 117036015 117036325 -31747147 + AluSp SINE Alu 1 305 -8 2181 110 0 0 chr11 117036411 117036718 -31746754 - AluSg SINE Alu 0 307 1 262 155 99 56 chr11 117036940 117037011 -31746461 - MIR3 SINE MIR -9 199 126 240 35 0 0 chr11 117037781 117037810 -31745662 + (CA)n Simple_repeat Simple_repeat 1 29 0 21 0 0 0 chr11 117038806 117038827 -31744645 + GC_rich Low_complexity Low_complexity 1 21 0 699 168 76 92 chr11 117039239 117039424 -31744048 - AluJo SINE Alu -45 267 86 1442 142 9 0 chr11 117039424 117039642 -31743830 - AluJo SINE Alu -92 220 1 207 0 0 0 chr11 117039870 117039893 -31743579 + (A)n Simple_repeat Simple_repeat 1 23 0 2449 69 16 0 chr11 117040131 117040434 -31743038 + AluSp SINE Alu 1 308 -5 2188 98 0 39 chr11 117040445 117040579 -31742893 + AluSq SINE Alu 1 139 -174 2342 98 0 7 chr11 117040579 117040884 -31742588 + AluSg SINE Alu 1 303 -7 2188 98 0 39 chr11 117040884 117041054 -31742418 + AluSq SINE Alu 139 293 -20 2124 93 79 0 chr11 117041599 117041878 -31741594 - AluSx SINE Alu -11 301 1 2185 118 7 0 chr11 117042382 117042679 -31740793 + AluSx SINE Alu 2 300 -12 740 176 0 8 chr11 117043340 117043459 -31740013 + FLAM_C SINE Alu 1 118 -15 966 128 6 11 chr11 117043462 117043641 -31739831 + (GAA)n Simple_repeat Simple_repeat 2 179 0 2240 132 28 110 chr11 117044013 117044440 -31739032 - MLT1C LTR MaLR 0 467 87 2261 108 3 29 chr11 117044440 117044756 -31738716 - AluSx SINE Alu -4 308 1 2240 132 28 110 chr11 117044756 117044837 -31738635 - MLT1C LTR MaLR -380 87 1 241 335 110 32 chr11 117045285 117045420 -31738052 + L2 LINE L2 3099 3249 -23 1728 163 19 36 chr11 117045420 117045727 -31737745 - AluJo SINE Alu -10 302 1 241 335 110 32 chr11 117045727 117045746 -31737726 + L2 LINE L2 3249 3265 -7 37 23 0 0 chr11 117045936 117045980 -31737492 + AT_rich Low_complexity Low_complexity 1 44 0 192 77 0 0 chr11 117046157 117046183 -31737289 + (A)n Simple_repeat Simple_repeat 1 26 0 1711 129 0 41 chr11 117046183 117046477 -31736995 + AluSx SINE Alu 15 296 -16 727 222 63 11 chr11 117046495 117046684 -31736788 + MSTC LTR MaLR 230 428 0 1309 241 26 61 chr11 117046746 117047025 -31736447 + Charlie4a DNA MER1_type 4 262 -1699 745 156 0 30 chr11 117047025 117047160 -31736312 + FLAM_C SINE Alu 3 133 0 1309 241 26 61 chr11 117047160 117047337 -31736135 + Charlie4a DNA MER1_type 262 444 -64 2380 95 3 0 chr11 117047348 117047652 -31735820 + AluY SINE Alu 1 305 -6 2351 84 7 0 chr11 117047752 117048074 -31735398 + AluSp SINE Alu 1 324 0 628 130 0 0 chr11 117048082 117048174 -31735298 + AluJ/FLAM SINE Alu 11 102 -210 1393 146 2 14 chr11 117048610 117048843 -31734629 + L1PB4 LINE L1 5928 6275 -25 34 0 0 0 chr11 117048843 117048877 -31734595 + AT_rich Low_complexity Low_complexity 1 34 0 469 295 55 20 chr11 117048918 117049118 -31734354 + PABL_B LTR ERV1 1 207 -460 1056 239 40 55 chr11 117049124 117049451 -31734021 + PABL_B LTR ERV1 346 667 0 709 214 69 12 chr11 117049452 117049625 -31733847 + L1M4 LINE L1 4777 4959 -1187 2328 109 0 0 chr11 117049665 117049977 -31733495 + AluSx SINE Alu 1 312 0 205 316 32 32 chr11 117049978 117050073 -31733399 - MIR SINE MIR -82 126 32 2193 92 7 3 chr11 117050691 117050994 -31732478 - AluSp SINE Alu 0 304 1 1083 220 44 4 chr11 117051253 117051480 -31731992 + MLT1A1 LTR MaLR 130 365 0 193 319 11 33 chr11 117052064 117052155 -31731317 + MIR SINE MIR 26 114 -148 250 286 50 36 chr11 117052158 117052298 -31731174 - MIR SINE MIR -4 258 117 440 188 5 97 chr11 117052299 117052388 -31731084 - MLT1I LTR MaLR 0 428 359 1859 171 11 0 chr11 117052388 117052675 -31730797 + AluJo SINE Alu 1 290 -22 440 188 5 97 chr11 117052675 117052732 -31730740 - MLT1I LTR MaLR -69 359 298 1452 143 9 9 chr11 117052782 117053006 -31730466 + AluJb SINE Alu 59 282 -30 1421 205 15 22 chr11 117053095 117053231 -31730241 - AluJb SINE Alu -44 268 133 2353 98 10 0 chr11 117053231 117053527 -31729945 - AluSp SINE Alu -14 299 1 1421 205 15 22 chr11 117053527 117053658 -31729814 - AluJb SINE Alu -179 133 3 2207 104 0 7 chr11 117053790 117054087 -31729385 - AluSx SINE Alu -17 295 1 2119 119 7 0 chr11 117054201 117054494 -31728978 - AluSx SINE Alu -17 295 1 21 36 0 0 chr11 117054768 117054796 -31728676 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr11 117055053 117055081 -31728391 + AT_rich Low_complexity Low_complexity 1 28 0 880 132 71 66 chr11 117055178 117055296 -31728176 - L1PB1 LINE L1 -3 6148 6027 2233 81 0 10 chr11 117055296 117055591 -31727881 - AluSc SINE Alu -17 292 1 880 132 71 66 chr11 117055591 117055669 -31727803 - L1PB1 LINE L1 -124 6027 5951 2028 133 33 0 chr11 117056417 117056719 -31726753 - AluSx SINE Alu 0 312 1 2171 118 3 0 chr11 117057594 117057882 -31725590 - AluSg SINE Alu -21 289 1 232 359 26 26 chr11 117057996 117058113 -31725359 + MIR SINE MIR 56 172 -90 2102 115 4 0 chr11 117058213 117058492 -31724980 - AluSx SINE Alu -32 280 1 2081 139 3 0 chr11 117059095 117059398 -31724074 - AluSq SINE Alu -9 304 1 199 234 208 0 chr11 117059542 117059619 -31723853 + L2 LINE L2 3221 3313 0 1912 151 3 3 chr11 117059726 117060010 -31723462 + AluJb SINE Alu 1 284 -28 2953 191 17 54 chr11 117060238 117060739 -31722733 - L1 LINE L1 -3225 3623 3160 2236 111 0 0 chr11 117060739 117061028 -31722444 - AluSx SINE Alu -23 289 1 2953 191 17 54 chr11 117061028 117061302 -31722170 - L1 LINE L1 -3688 3160 2877 1572 167 6 87 chr11 117061359 117061670 -31721802 - AluJo SINE Alu -26 286 1 1866 118 0 3 chr11 117061671 117061959 -31721513 - L1 LINE L1 -3957 2892 2606 437 262 167 0 chr11 117061961 117062087 -31721385 + MLT1H LTR MaLR 61 207 -342 10771 207 17 12 chr11 117062097 117065824 -31717648 - L1PB1 LINE L1 -2 6385 2157 2256 114 0 10 chr11 117065824 117066131 -31717341 - AluSx SINE Alu -8 304 1 10771 207 17 12 chr11 117066131 117066927 -31716545 - L1PB1 LINE L1 -4230 2157 1367 3213 102 35 190 chr11 117066930 117067969 -31715503 + LTR12 LTR ERV1 1 713 -1 5321 146 28 3 chr11 117067969 117068875 -31714597 - L1PBa LINE L1 -4604 2259 1332 4306 203 93 14 chr11 117068892 117069965 -31713507 - L1PBa LINE L1 -5700 1163 6 1199 175 0 5 chr11 117069979 117070179 -31713293 - MSTA LTR MaLR -225 203 5 336 221 0 23 chr11 117070180 117070266 -31713206 + MLT1H LTR MaLR 208 291 -258 643 186 59 0 chr11 117070313 117070431 -31713041 + MLT1H LTR MaLR 424 548 -1 213 346 170 6 chr11 117070463 117070622 -31712850 - MIR SINE MIR -25 237 53 2133 130 0 13 chr11 117070633 117070934 -31712538 + AluSx SINE Alu 1 297 -15 2165 131 0 16 chr11 117072106 117072420 -31711052 - AluSx SINE Alu -3 309 1 2124 91 7 3 chr11 117072688 117072974 -31710498 - AluSg SINE Alu -11 299 13 1757 175 0 3 chr11 117073038 117073335 -31710137 - AluJb SINE Alu -16 296 1 780 231 0 0 chr11 117073472 117073606 -31709866 - AluJo SINE Alu -177 135 2 292 288 22 29 chr11 117073613 117073752 -31709720 + L1M4 LINE L1 4265 4402 -1744 2064 103 3 52 chr11 117073785 117074095 -31709377 + AluSx SINE Alu 1 295 -17 379 301 184 28 chr11 117075210 117075536 -31707936 - L2 LINE L2 -1 3312 2936 2641 107 36 43 chr11 117075537 117075956 -31707516 + L1PA12 LINE L1 5752 6167 -1 226 335 12 36 chr11 117076235 117076483 -31706989 - L1M4 LINE L1 -969 5177 4936 2285 119 0 0 chr11 117076499 117076801 -31706671 + AluSx SINE Alu 3 304 -8 256 221 0 73 chr11 117076852 117076920 -31706552 - L1MC3 LINE L1 -1050 6735 6673 * 1416 210 90 125 chr11 117076916 117077149 -31706323 - L1MC4a LINE L1 -1211 6597 6357 3665 126 21 12 chr11 117077149 117077361 -31706111 + L1PA15 LINE L1 5592 5801 -364 4816 102 66 29 chr11 117077361 117078118 -31705354 + LTR1 LTR ERV1 1 785 0 3665 126 21 12 chr11 117078118 117078469 -31705003 + L1PA15 LINE L1 5801 6160 -5 1416 210 90 125 chr11 117078469 117078708 -31704764 - L1MC4a LINE L1 -1451 6357 6111 2006 128 7 10 chr11 117078708 117079005 -31704467 - AluSx SINE Alu -16 296 1 1416 210 90 125 chr11 117079005 117079308 -31704164 - L1MC4a LINE L1 -1697 6111 5848 337 268 149 36 chr11 117079533 117079701 -31703771 - HAL1b LINE L1 -498 850 664 763 204 0 8 chr11 117079793 117079925 -31703547 + FLAM_A SINE Alu 1 131 -2 308 259 12 24 chr11 117080455 117080540 -31702932 - MIR3 SINE MIR -3 205 122 512 123 41 0 chr11 117080631 117080704 -31702768 + AluJ/FLAM SINE Alu 2 77 -235 1692 186 6 6 chr11 117080806 117081118 -31702354 - AluJo SINE Alu 0 312 1 21 0 0 0 chr11 117081257 117081278 -31702194 + AT_rich Low_complexity Low_complexity 1 21 0 309 214 60 52 chr11 117081529 117081841 -31701631 - L1M2 LINE L1 -752 5403 5192 5595 104 7 26 chr11 117081844 117082084 -31701388 - L1MA2 LINE L1 0 6304 6061 2319 116 3 0 chr11 117082084 117082395 -31701077 - AluSx SINE Alu 0 312 1 5595 104 7 26 chr11 117082395 117082996 -31700476 - L1MA2 LINE L1 -243 6061 5479 182 250 154 0 chr11 117083367 117083419 -31700053 + MIR SINE MIR 118 177 -85 318 260 40 40 chr11 117083488 117083588 -31699884 + MIR3 SINE MIR 108 207 -1 286 333 0 0 chr11 117083708 117083798 -31699674 + CT-rich Low_complexity Low_complexity 3 92 0 298 302 43 29 chr11 117083971 117084110 -31699362 + L2 LINE L2 3173 3313 0 441 210 80 0 chr11 117084419 117084519 -31698953 - L2 LINE L2 -4 3309 3202 2135 128 3 0 chr11 117085157 117085454 -31698018 - AluSq SINE Alu -15 298 1 2183 122 0 0 chr11 117085589 117085883 -31697589 + AluSq SINE Alu 1 294 -19 1499 313 31 27 chr11 117085897 117086482 -31696990 + L1PA16 LINE L1 788 1374 -6200 336 321 52 7 chr11 117086491 117086707 -31696765 + L1PA16 LINE L1 2085 2306 -5268 5737 257 33 38 chr11 117086961 117089399 -31694073 + L1PA16 LINE L1 2203 4628 -2956 7583 53 0 23 chr11 117090096 117091131 -31692341 + L1PA5 LINE L1 5141 6154 0 315 105 3 0 chr11 117091134 117091190 -31692282 + L1 LINE L1 2127 2183 -3963 216 186 0 0 chr11 117091987 117092046 -31691426 + (TA)n Simple_repeat Simple_repeat 1 59 0 10073 188 35 4 chr11 117092177 117094482 -31688990 + L1PA16 LINE L1 4600 6970 -634 2085 167 14 20 chr11 117094482 117094814 -31688658 + L1PA16 LINE L1 7252 7597 -7 2046 133 3 10 chr11 117095041 117095342 -31688130 - AluSx SINE Alu -13 299 1 861 259 256 16 chr11 117095363 117095753 -31687719 - HAL1 LINE L1 -1962 545 44 2247 119 49 32 chr11 117095753 117096122 -31687350 - THE1C LTR MaLR 0 375 1 861 259 256 16 chr11 117096122 117096156 -31687316 - HAL1 LINE L1 -2463 44 19 515 289 107 9 chr11 117096254 117096479 -31686993 + MIR SINE MIR 7 253 -9 447 314 64 20 chr11 117096541 117096745 -31686727 - L2 LINE L2 -21 3292 3080 398 230 60 20 chr11 117096896 117096996 -31686476 + MIR3 SINE MIR 86 189 -19 2130 127 0 7 chr11 117097056 117097355 -31686117 + AluSx SINE Alu 1 297 -15 24 53 0 0 chr11 117097697 117097735 -31685737 + AT_rich Low_complexity Low_complexity 1 38 0 228 67 0 0 chr11 117098186 117098216 -31685256 + (TCTA)n Simple_repeat Simple_repeat 4 33 0 219 293 0 66 chr11 117098667 117098773 -31684699 + MIR SINE MIR 92 190 -72 21 57 0 0 chr11 117098965 117099000 -31684472 + AT_rich Low_complexity Low_complexity 1 35 0 2276 119 3 0 chr11 117099357 117099660 -31683812 + AluSp SINE Alu 1 304 -9 25 0 0 0 chr11 117099705 117099730 -31683742 + AT_rich Low_complexity Low_complexity 1 25 0 255 103 98 2 chr11 117099872 117100067 -31683405 + AluSx SINE Alu 3 262 -38 2423 229 68 72 chr11 117100072 117100173 -31683299 + HAL1 LINE L1 1075 1175 -1332 2350 77 0 20 chr11 117100173 117100471 -31683001 - AluY SINE Alu -19 292 1 2423 229 68 72 chr11 117100471 117101036 -31682436 + HAL1 LINE L1 1175 1738 -769 255 61 0 0 chr11 117101036 117101069 -31682403 + (CA)n Simple_repeat Simple_repeat 2 34 0 2423 229 68 72 chr11 117101069 117101372 -31682100 + HAL1 LINE L1 1738 2041 -466 359 230 74 30 chr11 117101378 117101513 -31681959 + MLT1J1 LTR MaLR 1 141 -305 766 108 0 77 chr11 117101575 117101705 -31681767 - AluJb SINE Alu -32 280 161 836 61 0 0 chr11 117101705 117101804 -31681668 - AluSc SINE Alu -210 99 1 478 278 6 30 chr11 117101835 117102004 -31681468 - HAL1 LINE L1 -280 2227 2063 348 158 35 0 chr11 117102026 117102083 -31681389 - MLT1I LTR MaLR -2 407 349 1927 131 44 0 chr11 117102104 117102402 -31681070 + AluSx SINE Alu 1 311 -1 2414 68 0 26 chr11 117102955 117103266 -31680206 + AluY SINE Alu 1 303 -8 474 296 56 15 chr11 117103463 117103551 -31679921 - L2 LINE L2 0 3313 3230 2081 133 3 0 chr11 117103551 117103853 -31679619 + AluJb SINE Alu 3 305 -7 474 296 56 15 chr11 117103853 117103960 -31679512 - L2 LINE L2 -83 3230 3110 969 193 6 6 chr11 117104682 117104848 -31678624 - FRAM SINE Alu 0 166 1 1979 155 32 55 chr11 117105238 117105364 -31678108 + L1MB1 LINE L1 5764 5891 -277 2185 123 3 0 chr11 117105364 117105664 -31677808 + AluSq SINE Alu 1 301 -12 2378 97 0 10 chr11 117105664 117105975 -31677497 + AluSc SINE Alu 1 308 -1 1979 155 32 55 chr11 117105975 117106248 -31677224 + L1MB1 LINE L1 5889 6155 -13 1362 324 31 24 chr11 117106552 117107133 -31676339 - ERVL LTR ERVL -732 5032 4448 315 306 86 4 chr11 117107191 117107445 -31676027 - ERVL LTR ERVL -1372 4282 4016 509 282 8 0 chr11 117107915 117108032 -31675440 - ERVL LTR ERVL -2088 3397 3280 209 397 15 7 chr11 117108183 117108319 -31675153 + L2 LINE L2 2511 2647 -667 1890 166 3 3 chr11 117108360 117108655 -31674817 - AluJo SINE Alu -17 295 1 384 305 128 14 chr11 117109470 117109611 -31673861 + L2 LINE L2 3107 3263 -9 224 57 0 29 chr11 117109961 117109996 -31673476 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 378 232 120 7 chr11 117110269 117110411 -31673061 - L1ME4a LINE L1 -1 6120 5963 274 289 139 52 chr11 117110439 117110612 -31672860 + MIR SINE MIR 5 192 -70 2328 102 3 0 chr11 117110618 117110923 -31672549 + AluSx SINE Alu 1 306 -6 2307 73 0 11 chr11 117111064 117111391 -31672081 - AluY SINE Alu 0 324 1 266 330 80 65 chr11 117111430 117111706 -31671766 + L2 LINE L2 2454 2733 -581 198 167 0 0 chr11 117111770 117111806 -31671666 + (TG)n Simple_repeat Simple_repeat 2 37 0 1119 271 60 87 chr11 117112413 117112709 -31670763 - MLT1J LTR MaLR -4 507 229 1797 137 13 30 chr11 117112709 117113008 -31670464 - AluJb SINE Alu -18 294 1 1119 271 60 87 chr11 117113008 117113228 -31670244 - MLT1J LTR MaLR -282 229 5 224 316 178 59 chr11 117113231 117113484 -31669988 + L2 LINE L2 2985 3267 -5 2083 207 41 42 chr11 117113549 117114177 -31669295 + L1MD2 LINE L1 4832 5458 -745 500 121 24 12 chr11 117114177 117114260 -31669212 + MER4A LTR ERV1 1 84 -580 2632 153 120 5 chr11 117114260 117114762 -31668710 + L1MD2 LINE L1 5768 8026 -16 2097 92 36 20 chr11 117114994 117115298 -31668174 - AluSc SINE Alu 0 309 1 21 0 0 0 chr11 117115467 117115488 -31667984 + AT_rich Low_complexity Low_complexity 1 21 0 1004 171 79 86 chr11 117115720 117115897 -31667575 + MLT1B LTR MaLR 1 178 -212 1716 186 0 22 chr11 117115897 117116209 -31667263 + AluJo SINE Alu 1 305 -7 1004 171 79 86 chr11 117116209 117116222 -31667250 + MLT1B LTR MaLR 178 190 -200 2221 96 10 0 chr11 117116222 117116513 -31666959 + AluSp SINE Alu 1 294 -19 1004 171 79 86 chr11 117116513 117116728 -31666744 + MLT1B LTR MaLR 190 389 -1 355 203 264 14 chr11 117117204 117117352 -31666120 - MER5A DNA MER1_type -1 188 4 320 325 26 17 chr11 117117363 117117480 -31665992 + L2 LINE L2 3151 3268 -4 233 299 17 77 chr11 117117638 117117755 -31665717 - MIR SINE MIR -64 198 89 2418 97 6 0 chr11 117118600 117118911 -31664561 - AluSq SINE Alu 0 313 1 300 258 96 79 chr11 117119599 117119659 -31663813 + MIR SINE MIR 8 66 -196 578 64 13 0 chr11 117119659 117119737 -31663735 + MADE1 DNA Mariner 2 80 0 300 258 96 79 chr11 117119737 117119916 -31663556 + MIR SINE MIR 66 251 -11 401 267 17 0 chr11 117120506 117120622 -31662850 - MER94 DNA DNA -15 119 2 234 0 0 0 chr11 117120918 117120944 -31662528 + (CA)n Simple_repeat Simple_repeat 2 27 0 2366 60 0 3 chr11 117122582 117122919 -31660553 - AluSc SINE Alu 0 336 1 1082 162 32 0 chr11 117124439 117124624 -31658848 + AluJb SINE Alu 121 311 -1 229 214 36 18 chr11 117124676 117124732 -31658740 + MIR SINE MIR 21 77 -185 703 205 0 0 chr11 117125114 117125236 -31658236 - FLAM_A SINE Alu -11 122 1 829 163 0 0 chr11 117125572 117125701 -31657771 + AluJo SINE Alu 2 130 -172 1639 118 133 0 chr11 117125701 117125956 -31657516 - AluSx SINE Alu -12 290 2 2523 69 3 0 chr11 117125966 117126271 -31657201 - AluSp SINE Alu -7 306 1 1097 142 0 11 chr11 117126287 117126463 -31657009 + AluJo SINE Alu 132 305 -7 200 304 184 6 chr11 117126467 117126635 -31656837 - L3 LINE CR1 -237 1340 1143 181 304 120 22 chr11 117127648 117127740 -31655732 - L2 LINE L2 -36 3236 3136 256 277 121 42 chr11 117127839 117128005 -31655467 - MIR SINE MIR -70 192 14 1013 122 0 0 chr11 117128681 117128820 -31654652 - AluJb SINE Alu -173 139 1 435 134 0 0 chr11 117128889 117128956 -31654516 + (TCCA)n Simple_repeat Simple_repeat 1 67 0 254 158 123 35 chr11 117128965 117129022 -31654450 - L2 LINE L2 -18 3295 3234 299 310 56 43 chr11 117129060 117129292 -31654180 + L2 LINE L2 2169 2403 -911 215 257 66 88 chr11 117129487 117129623 -31653849 + L2 LINE L2 2939 3071 -201 2124 121 0 0 chr11 117129650 117129940 -31653532 - AluSx SINE Alu -17 295 6 381 236 116 60 chr11 117130268 117131046 -31652426 - HAL1 LINE L1 0 2507 1774 195 42 0 0 chr11 117131046 117131070 -31652402 + (ATTG)n Simple_repeat Simple_repeat 4 27 0 1596 155 64 4 chr11 117131070 117131334 -31652138 - AluJo SINE Alu -32 280 1 381 236 116 60 chr11 117131334 117131780 -31651692 - HAL1 LINE L1 -732 1775 1084 201 74 0 0 chr11 117132081 117132108 -31651364 + (TC)n Simple_repeat Simple_repeat 2 28 0 * 324 90 56 11 chr11 117132107 117132196 -31651276 + (TA)n Simple_repeat Simple_repeat 2 94 0 2225 114 0 0 chr11 117132198 117132487 -31650985 - AluSx SINE Alu -22 290 2 1849 101 11 18 chr11 117132719 117133005 -31650467 + MER41B LTR ERV1 267 550 -85 234 0 0 0 chr11 117133005 117133031 -31650441 + (A)n Simple_repeat Simple_repeat 1 26 0 694 269 22 26 chr11 117133234 117133461 -31650011 + AluJo SINE Alu 63 288 -24 332 271 47 0 chr11 117133461 117133546 -31649926 + L1MC4 LINE L1 6615 6703 -1339 327 315 0 0 chr11 117133466 117133555 -31649917 - L1MC4 LINE L1 -1339 6703 6615 * 243 188 0 0 chr11 117133556 117133604 -31649868 + (TATATG)n Simple_repeat Simple_repeat 2 49 0 340 241 96 0 chr11 117133613 117133696 -31649776 + L1MC4 LINE L1 6615 6705 -1337 1477 262 40 62 chr11 117133802 117134545 -31648927 - L1MC4 LINE L1 0 8042 7316 1138 164 0 51 chr11 117134714 117134928 -31648544 + AluJo SINE Alu 1 203 -109 2418 51 0 0 chr11 117135778 117136070 -31647402 + AluY SINE Alu 1 292 -19 2200 105 13 0 chr11 117137235 117137540 -31645932 + AluSc SINE Alu 1 309 0 1187 186 5 23 chr11 117137648 117137869 -31645603 - AluJo SINE Alu -9 303 87 2087 125 3 7 chr11 117137903 117138208 -31645264 - AluSx SINE Alu -7 305 2 205 315 102 37 chr11 117138811 117138919 -31644553 + L2 LINE L2 3191 3305 -8 1572 128 164 55 chr11 117139659 117139855 -31643617 - MER47A DNA MER2_type -1957 366 193 2098 142 0 3 chr11 117139855 117140166 -31643306 - AluSq SINE Alu -3 310 1 1572 128 164 55 chr11 117140166 117140298 -31643174 - MER47A DNA MER2_type -2130 193 2 6742 151 22 18 chr11 117140592 117142184 -31641288 - L1MA4A LINE L1 -26 6265 4633 2045 143 0 6 chr11 117142184 117142498 -31640974 - AluSx SINE Alu 0 312 1 6742 151 22 18 chr11 117142498 117143136 -31640336 - L1MA4A LINE L1 -1658 4633 3999 629 247 44 33 chr11 117143176 117143478 -31639994 - L1MC4 LINE L1 -302 5819 5532 2452 82 0 7 chr11 117143651 117143955 -31639517 - AluY SINE Alu -7 304 3 230 231 0 31 chr11 117143970 117144035 -31639437 + (TATATG)n Simple_repeat Simple_repeat 1 63 0 34838 93 12 4 chr11 117144291 117150384 -31633088 + L1PA5 LINE L1 12 6151 -3 24 67 0 0 chr11 117150384 117150429 -31633043 + AT_rich Low_complexity Low_complexity 1 45 0 338 91 30 76 chr11 117150445 117150511 -31632961 - Tigger3(Golem) DNA MER2_type -2927 102 40 717 291 89 3 chr11 117150544 117150860 -31632612 - L1MC4 LINE L1 -1024 7018 6676 261 141 141 59 chr11 117150874 117150959 -31632513 - L1MC5 LINE L1 -600 7361 7270 1270 178 19 8 chr11 117151005 117151264 -31632208 + MER82 DNA MER2_type 3 264 -389 1895 151 4 0 chr11 117151309 117151587 -31631885 + AluJb SINE Alu 6 284 -28 699 284 34 14 chr11 117151592 117151800 -31631672 + MER82 DNA MER2_type 442 653 0 549 193 33 20 chr11 117152011 117152161 -31631311 + MER96B DNA MER1_type? 135 286 -131 246 62 0 0 chr11 117152178 117152210 -31631262 + (TA)n Simple_repeat Simple_repeat 2 33 0 749 155 28 0 chr11 117152276 117152418 -31631054 - MER82 DNA MER2_type -454 199 54 26 50 0 0 chr11 117152439 117152479 -31630993 + AT_rich Low_complexity Low_complexity 1 40 0 426 188 0 0 chr11 117152479 117152543 -31630929 - AluJ/FRAM SINE Alu -27 285 222 314 155 17 0 chr11 117152559 117152617 -31630855 - MER96B DNA MER1_type? -358 59 1 201 167 0 0 chr11 117152899 117152935 -31630537 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 4046 225 37 28 chr11 117153133 117154555 -31628917 + L1MEc LINE L1 1867 3266 -2949 2307 99 0 3 chr11 117154555 117154867 -31628605 + AluY SINE Alu 1 311 0 4046 225 37 28 chr11 117154867 117154976 -31628496 + L1MEc LINE L1 3266 3372 -2843 1092 240 77 42 chr11 117155055 117155484 -31627988 + MLT1C LTR MaLR 22 465 -2 758 241 60 8 chr11 117155487 117155753 -31627719 + L1MEc LINE L1 4047 4326 -1889 1763 230 40 23 chr11 117155756 117156282 -31627190 + L1MEc LINE L1 4824 5358 -857 1724 183 14 22 chr11 117156282 117156648 -31626824 + MLT1A2 LTR MaLR 1 363 -11 3583 188 33 35 chr11 117156654 117157551 -31625921 + L1MB8 LINE L1 5283 6178 0 1943 98 3 85 chr11 117157560 117157876 -31625596 + AluSx SINE Alu 1 290 -22 481 332 43 22 chr11 117157891 117158412 -31625060 - L1 LINE L1 -2049 4301 3749 2151 128 40 68 chr11 117158603 117159047 -31624425 + MSTB1 LTR MaLR 1 432 0 2080 140 3 3 chr11 117160250 117160550 -31622922 + AluSx SINE Alu 1 300 -12 1846 174 3 7 chr11 117160876 117161186 -31622286 - AluJo SINE Alu -3 309 1 596 275 135 33 chr11 117161787 117162151 -31621321 - MLT1J1 LTR MaLR -44 402 2 320 378 94 41 chr11 117163858 117164575 -31618897 - L2 LINE L2 -218 3054 2305 228 35 0 0 chr11 117164595 117164624 -31618848 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 528 272 108 49 chr11 117165940 117166136 -31617336 + HAL1b LINE L1 149 332 -1016 2560 65 0 0 chr11 117166136 117166444 -31617028 - AluY SINE Alu -3 308 1 528 272 108 49 chr11 117166444 117166884 -31616588 + HAL1b LINE L1 332 823 -525 406 328 64 51 chr11 117167207 117167388 -31616084 + L1M4 LINE L1 2205 2382 -3764 2017 119 10 26 chr11 117167388 117167691 -31615781 - AluSq SINE Alu -15 298 1 406 328 64 51 chr11 117167691 117167884 -31615588 + L1M4 LINE L1 2382 2584 -3562 4282 230 79 35 chr11 117168096 117169198 -31614274 - L1 LINE L1 -2723 3627 2575 2254 79 62 0 chr11 117169198 117169489 -31613983 - AluSc SINE Alu 0 309 1 4282 230 79 35 chr11 117169489 117171458 -31612014 - L1 LINE L1 -3775 2575 731 271 270 50 34 chr11 117172140 117172289 -31611183 - L1 LINE L1 -5991 290 1 537 224 0 9 chr11 117172315 117172422 -31611050 + MLT1E LTR MaLR 9 114 -479 3224 138 45 2 chr11 117172424 117172932 -31610540 - MER44D DNA MER2_type 0 605 204 1793 251 111 43 chr11 117172938 117173607 -31609865 - L1MEc LINE L1 -5640 756 43 731 229 86 148 chr11 117174083 117174595 -31608877 + MLT1H1 LTR MaLR 35 514 -41 282 282 42 0 chr11 117174604 117174675 -31608797 + L2 LINE L2 3229 3302 -11 1709 294 116 19 chr11 117174701 117175459 -31608013 - L2 LINE L2 -1126 2188 1357 265 404 96 0 chr11 117175519 117175675 -31607797 + L2 LINE L2 3102 3272 0 2176 52 6 76 chr11 117175914 117176244 -31607228 + L1PA7 LINE L1 5844 6150 -4 977 195 0 0 chr11 117176524 117176698 -31606774 + FRAM SINE Alu 2 175 -1 203 130 22 22 chr11 117178338 117178384 -31605088 + A-rich Low_complexity Low_complexity 4 49 0 881 225 86 0 chr11 117179987 117180174 -31603298 + MIR SINE MIR 59 261 -1 210 236 0 0 chr11 117181109 117181164 -31602308 + CT-rich Low_complexity Low_complexity 2 56 0 270 0 0 0 chr11 117181181 117181211 -31602261 + (CA)n Simple_repeat Simple_repeat 1 30 0 292 277 60 0 chr11 117181719 117181802 -31601670 + MIR SINE MIR 35 122 -140 2130 193 78 2 chr11 117181818 117182254 -31601218 + MLT1D LTR MaLR 37 505 0 1724 99 114 0 chr11 117183363 117183626 -31599846 + AluSg SINE Alu 1 293 -17 1142 212 0 5 chr11 117184384 117184606 -31598866 - MER58A DNA MER1_type -1 223 3 502 227 17 8 chr11 117184608 117184727 -31598745 + L2 LINE L2 3189 3308 -5 23 86 0 0 chr11 117186095 117186153 -31597319 + AT_rich Low_complexity Low_complexity 1 58 0 1888 101 8 8 chr11 117186464 117186721 -31596751 + AluSc SINE Alu 1 257 -52 1517 127 0 5 chr11 117186721 117186934 -31596538 - AluSq SINE Alu -63 250 39 404 19 19 0 chr11 117187883 117187936 -31595536 + (TG)n Simple_repeat Simple_repeat 2 55 0 514 309 29 54 chr11 117187958 117188162 -31595310 + MER115 DNA AcHobo 314 512 -181 631 151 0 0 chr11 117188166 117188259 -31595213 + AluS SINE Alu 5 97 -215 425 188 62 0 chr11 117188259 117188371 -31595101 + MER115 DNA AcHobo 506 624 -69 4058 195 27 66 chr11 117188374 117188592 -31594880 - L1MD1 LINE L1 -8 6628 6403 794 173 23 52 chr11 117188592 117188765 -31594707 - FAM SINE Alu -7 168 1 4058 195 27 66 chr11 117188765 117188924 -31594548 - L1MD1 LINE L1 -233 6403 6239 5384 72 7 4 chr11 117188924 117189634 -31593838 - L1PA11 LINE L1 0 6174 5463 4058 195 27 66 chr11 117189634 117190192 -31593280 - L1MD1 LINE L1 -397 6239 5661 1972 149 0 7 chr11 117190192 117190493 -31592979 - AluSx SINE Alu -13 299 1 4058 195 27 66 chr11 117190493 117191442 -31592030 - L1MD1 LINE L1 -975 5661 4810 1538 231 86 8 chr11 117191444 117191816 -31591656 - MER82 DNA MER2_type -2 651 251 3827 224 93 84 chr11 117191833 117193188 -31590284 - L1MD1 LINE L1 -2184 4356 2985 1844 217 86 23 chr11 117193188 117193663 -31589809 + MLT1D LTR MaLR 1 505 0 3827 224 93 84 chr11 117193663 117194093 -31589379 - L1MD1 LINE L1 -3555 2985 2560 2618 176 62 46 chr11 117194097 117194460 -31589012 - L1MD1 LINE L1 -4006 2534 2178 2097 123 7 0 chr11 117194460 117194745 -31588727 + AluSx SINE Alu 3 289 -23 2618 176 62 46 chr11 117194745 117195137 -31588335 - L1MD1 LINE L1 -4362 2178 1767 2173 208 65 4 chr11 117195139 117195600 -31587872 - L1MD1 LINE L1 -5304 1236 748 1467 260 116 39 chr11 117196817 117197506 -31585966 + HAL1 LINE L1 26 767 -1740 198 103 0 0 chr11 117197949 117197978 -31585494 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1562 272 133 32 chr11 117200730 117200832 -31582640 - L2 LINE L2 -16 3297 3207 1774 180 42 14 chr11 117200832 117201187 -31582285 + MLT1A1 LTR MaLR 1 365 0 1562 272 133 32 chr11 117201187 117202056 -31581416 - L2 LINE L2 -106 3207 2230 951 256 100 15 chr11 117202164 117202434 -31581038 + MLT1H LTR MaLR 12 304 -245 235 179 0 54 chr11 117202425 117202481 -31580991 + MLT1G1 LTR MaLR 519 571 -24 * 383 356 65 55 chr11 117202707 117202982 -31580490 + L2 LINE L2 2995 3272 0 23 0 0 0 chr11 117203150 117203173 -31580299 + AT_rich Low_complexity Low_complexity 1 23 0 231 152 22 0 chr11 117203209 117203255 -31580217 + A-rich Low_complexity Low_complexity 2 48 0 484 315 171 10 chr11 117203401 117203811 -31579661 + L2 LINE L2 2838 3313 0 316 265 66 61 chr11 117203809 117204005 -31579467 - L2 LINE L2 -4 3309 3113 * 329 143 0 119 chr11 117204507 117204591 -31578881 - MIR SINE MIR -92 170 97 299 307 67 67 chr11 117204842 117204992 -31578480 + MIR SINE MIR 10 159 -103 1462 142 35 4 chr11 117204992 117205253 -31578219 - Tigger4(Zombi) DNA MER2_type -5 2726 2458 697 159 24 0 chr11 117205257 117205383 -31578089 - Tigger4(Zombi) DNA MER2_type -1601 1130 1002 2169 102 3 7 chr11 117205660 117205989 -31577483 + AluSg SINE Alu 1 310 0 2286 213 39 29 chr11 117206206 117206891 -31576581 + L1M4 LINE L1 2431 3122 -3024 27 29 0 0 chr11 117207079 117207113 -31576359 + AT_rich Low_complexity Low_complexity 1 34 0 2427 93 0 0 chr11 117207278 117207590 -31575882 + AluSp SINE Alu 1 312 -1 315 326 0 0 chr11 117207603 117207701 -31575771 - MIR SINE MIR -133 129 32 1121 166 5 5 chr11 117208545 117208738 -31574734 + L1MB8 LINE L1 5417 5609 -569 1546 111 22 4 chr11 117208772 117208998 -31574474 + MER30 DNA MER1_type 1 230 0 1056 151 29 19 chr11 117209023 117209229 -31574243 + L1MB8 LINE L1 5791 5998 -180 666 212 9 11 chr11 117209241 117209387 -31574085 + MER77 LTR ERV1 479 673 -4 387 198 49 0 chr11 117209420 117209501 -31573971 + ERVL LTR ERVL 3861 3945 -1540 2046 233 80 20 chr11 117209548 117210159 -31573313 + ERVL LTR ERVL 4125 4941 -823 739 145 0 83 chr11 117210159 117210304 -31573168 + FLAM_C SINE Alu 1 133 0 2046 233 80 20 chr11 117210304 117210504 -31572968 + ERVL LTR ERVL 4941 5128 -636 4559 180 28 30 chr11 117210504 117212330 -31571142 - L1MA4 LINE L1 -37 6263 4322 42582 34 21 1 chr11 117212339 117218370 -31565102 + L1PA3 LINE L1 1 6155 0 25 83 0 0 chr11 117218370 117218430 -31565042 + AT_rich Low_complexity Low_complexity 1 60 0 297 222 222 20 chr11 117218652 117218805 -31564667 + MIR SINE MIR 79 262 0 988 191 9 58 chr11 117218833 117219058 -31564414 + MER20 DNA MER1_type 6 219 0 2191 84 47 10 chr11 117219367 117219666 -31563806 + AluY SINE Alu 1 310 -1 3313 148 43 60 chr11 117220108 117220858 -31562614 + L1MB4 LINE L1 5441 6177 -3 441 239 25 122 chr11 117221926 117222123 -31561349 + MIR3 SINE MIR 30 207 -1 1532 137 43 8 chr11 117222255 117222510 -31560962 + MER21A LTR ERV1 1 264 -667 3094 147 44 38 chr11 117222511 117223062 -31560410 + MER21A LTR ERV1 371 924 -7 345 307 45 50 chr11 117223512 117223714 -31559758 + L2 LINE L2 3113 3313 0 1539 173 118 0 chr11 117223817 117224140 -31559332 - MER46B DNA MER2_type 0 236 1 271 186 17 0 chr11 117224097 117224156 -31559316 + MER46A DNA MER2_type 102 161 -75 * 1053 203 82 0 chr11 117224186 117224393 -31559079 + MER58A DNA MER1_type 1 224 0 21 57 0 0 chr11 117224990 117225025 -31558447 + AT_rich Low_complexity Low_complexity 1 35 0 2728 169 24 35 chr11 117225189 117225699 -31557773 + MER44D DNA MER2_type 1 559 -46 1190 193 5 5 chr11 117225699 117225906 -31557566 - AluJo SINE Alu -102 210 4 343 282 10 19 chr11 117225913 117226016 -31557456 + L2 LINE L2 1442 1543 -1771 1238 288 210 35 chr11 117226017 117226369 -31557103 + L2 LINE L2 1818 2107 -1206 2306 96 0 0 chr11 117226369 117226661 -31556811 + AluSc SINE Alu 1 292 -17 1238 288 210 35 chr11 117226661 117227038 -31556434 + L2 LINE L2 2107 2417 -896 237 33 0 0 chr11 117227038 117227068 -31556404 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1238 288 210 35 chr11 117227068 117227133 -31556339 + L2 LINE L2 2417 2469 -844 1922 151 14 57 chr11 117227133 117227485 -31555987 - MER1B DNA MER1_type 0 337 1 1238 288 210 35 chr11 117227485 117227954 -31555518 + L2 LINE L2 2469 3304 -9 2149 107 3 0 chr11 117227973 117228263 -31555209 - AluSg SINE Alu -18 292 2 863 276 0 13 chr11 117228822 117229047 -31554425 - MER58A DNA MER1_type -2 222 1 22 35 0 0 chr11 117229182 117229211 -31554261 + AT_rich Low_complexity Low_complexity 1 29 0 540 273 45 0 chr11 117230204 117230336 -31553136 + MLT1A2 LTR MaLR 1 138 -227 2429 74 44 186 chr11 117230336 117230864 -31552608 + MLT2A2 LTR ERVL 1 453 0 813 163 78 42 chr11 117230899 117231095 -31552377 + MLT1A2 LTR MaLR 173 463 -4 184 333 68 27 chr11 117231361 117231508 -31551964 + L2 LINE L2 1008 1160 -2154 2604 158 28 16 chr11 117233128 117233627 -31549845 + L1PB4 LINE L1 5651 6155 -1 329 389 60 5 chr11 117233948 117234164 -31549308 + L2 LINE L2 1836 2063 -1251 194 0 39 0 chr11 117234165 117234191 -31549281 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 662 199 121 91 chr11 117234505 117234632 -31548840 + MER5C DNA MER1_type 1 123 -201 2369 106 19 27 chr11 117234632 117234999 -31548473 + THE1B LTR MaLR 1 364 0 662 199 121 91 chr11 117234999 117235168 -31548304 + MER5C DNA MER1_type 123 306 -18 216 341 77 11 chr11 117235436 117235527 -31547945 + L2 LINE L2 3169 3265 -7 15152 196 14 15 chr11 117236247 117242466 -31541006 + L1PB1 LINE L1 7 6512 -355 558 0 0 0 chr11 117242466 117242528 -31540944 + (TA)n Simple_repeat Simple_repeat 1 62 0 15152 196 14 15 chr11 117242528 117242884 -31540588 + L1PB1 LINE L1 6512 6867 0 303 236 200 18 chr11 117244288 117244398 -31539074 + L2 LINE L2 3138 3267 -5 1479 238 28 0 chr11 117244640 117244963 -31538509 + MER58B DNA MER1_type 6 337 -4 531 264 46 28 chr11 117245152 117245368 -31538104 + L1MEc LINE L1 36 255 -6141 216 97 0 0 chr11 117245466 117245497 -31537975 + (GAA)n Simple_repeat Simple_repeat 2 32 0 315 230 81 27 chr11 117246167 117246241 -31537231 + MER91A DNA MER1_type 118 195 -1 386 268 68 37 chr11 117246301 117246491 -31536981 - L1M4 LINE L1 -2870 3276 3081 24 0 0 0 chr11 117247815 117247839 -31535633 + AT_rich Low_complexity Low_complexity 1 24 0 260 345 143 25 chr11 117247863 117247982 -31535490 - L2 LINE L2 -261 3052 2920 220 312 168 40 chr11 117247952 117248125 -31535347 - L2 LINE L2 -640 2674 2480 * 225 0 0 0 chr11 117250724 117250749 -31532723 + (CA)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr11 117251159 117251182 -31532290 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr11 117251296 117251330 -31532142 + AT_rich Low_complexity Low_complexity 1 34 0 4556 117 34 18 chr11 117251901 117251968 -31531504 + L1MC1 LINE L1 5586 5650 -683 2242 112 0 10 chr11 117251968 117252273 -31531199 - AluSx SINE Alu -10 302 1 4556 117 34 18 chr11 117252273 117252941 -31530531 + L1MC1 LINE L1 5650 6333 0 180 341 148 15 chr11 117253359 117253494 -31529978 - L3 LINE CR1 -848 729 577 621 225 35 0 chr11 117253639 117253781 -31529691 + MIR SINE MIR 49 195 -67 1126 153 6 0 chr11 117253813 117253989 -31529483 - AluJb SINE Alu -1 311 135 2295 251 66 75 chr11 117254046 117255136 -31528336 + L2 LINE L2 2160 3239 -74 203 244 0 0 chr11 117255375 117255420 -31528052 + (CA)n Simple_repeat Simple_repeat 2 46 0 2002 141 3 0 chr11 117255446 117255777 -31527695 + AluSx SINE Alu 1 332 0 2184 92 0 11 chr11 117257389 117257673 -31525799 - AluSx SINE Alu -14 298 18 2546 266 100 18 chr11 117258496 117259463 -31524009 + L1ME1 LINE L1 206 1252 -5144 1782 213 83 20 chr11 117259477 117260077 -31523395 + L1ME1 LINE L1 1886 2523 -3873 2100 225 108 14 chr11 117260090 117260198 -31523274 + L1ME1 LINE L1 2536 2632 -3583 1753 161 53 6 chr11 117260198 117260521 -31522951 - MER44D DNA MER2_type -1 608 1 2100 225 108 14 chr11 117260521 117261137 -31522335 + L1ME1 LINE L1 2632 3328 -2887 3262 195 49 43 chr11 117261182 117261794 -31521678 + L1ME1 LINE L1 5410 6030 -205 958 204 95 14 chr11 117261794 117262015 -31521457 - MER8 DNA MER2_type 0 239 1 3262 195 49 43 chr11 117262015 117262214 -31521258 + L1ME1 LINE L1 6030 6226 -9 21 0 0 0 chr11 117264077 117264098 -31519374 + AT_rich Low_complexity Low_complexity 1 21 0 333 0 0 0 chr11 117264810 117264847 -31518625 + (CA)n Simple_repeat Simple_repeat 2 38 0 1515 168 94 40 chr11 117264921 117265249 -31518223 + MER7A DNA MER2_type 2 345 -1 840 296 99 18 chr11 117265817 117266360 -31517112 + L1MC4a LINE L1 5317 5903 -1905 36 62 0 0 chr11 117266384 117266448 -31517024 + AT_rich Low_complexity Low_complexity 1 64 0 218 194 0 0 chr11 117266986 117267022 -31516450 + (CATATA)n Simple_repeat Simple_repeat 5 40 0 246 320 10 0 chr11 117269642 117269742 -31513730 + HAL1 LINE L1 1208 1308 -1199 1184 236 48 13 chr11 117270315 117270628 -31512844 + L1MA9 LINE L1 5950 6273 -39 208 135 0 0 chr11 117270631 117270668 -31512804 + (A)n Simple_repeat Simple_repeat 1 37 0 34 24 0 0 chr11 117270966 117271007 -31512465 + AT_rich Low_complexity Low_complexity 1 41 0 296 340 53 7 chr11 117271333 117271615 -31511857 + L1ME LINE L1 4734 5028 -1118 2189 103 0 23 chr11 117271928 117272230 -31511242 + AluSg SINE Alu 1 295 -15 306 272 48 0 chr11 117272358 117272461 -31511011 + L1ME3A LINE L1 5543 5650 -471 23 0 0 0 chr11 117272577 117272600 -31510872 + AT_rich Low_complexity Low_complexity 1 23 0 30 27 0 0 chr11 117273458 117273495 -31509977 + AT_rich Low_complexity Low_complexity 1 37 0 261 0 0 0 chr11 117273510 117273539 -31509933 + (TA)n Simple_repeat Simple_repeat 2 30 0 1283 218 141 43 chr11 117274112 117274580 -31508892 + L1ME3A LINE L1 5637 6150 -20 21 71 0 0 chr11 117275403 117275445 -31508027 + AT_rich Low_complexity Low_complexity 1 42 0 2288 78 0 36 chr11 117275482 117275791 -31507681 + AluSc SINE Alu 1 298 -11 414 329 33 13 chr11 117276087 117276239 -31507233 + MIR3 SINE MIR 40 194 -14 303 265 163 10 chr11 117276383 117276481 -31506991 + MIR SINE MIR 30 142 -66 629 323 61 4 chr11 117276770 117276999 -31506473 - MIR SINE MIR -15 247 6 1830 141 44 10 chr11 117278370 117278667 -31504805 + AluJb SINE Alu 1 307 -5 26 50 0 0 chr11 117278826 117278866 -31504606 + AT_rich Low_complexity Low_complexity 1 40 0 478 342 98 59 chr11 117278960 117279606 -31503866 - L2 LINE L2 -3 3269 2587 317 315 56 25 chr11 117279618 117279780 -31503692 - L2 LINE L2 -27 3286 3120 429 249 67 22 chr11 117280252 117280579 -31502893 + L1ME LINE L1 5209 5557 -613 423 291 16 72 chr11 117280586 117280837 -31502635 - L1MEd LINE L1 -5879 240 4 586 285 93 19 chr11 117281312 117281526 -31501946 + MIR SINE MIR 15 244 -18 1699 181 0 3 chr11 117282010 117282298 -31501174 + AluJo SINE Alu 1 287 -25 233 69 0 0 chr11 117282303 117282332 -31501140 + (GA)n Simple_repeat Simple_repeat 1 29 0 754 107 13 27 chr11 117282332 117282481 -31500991 + (GGAA)n Simple_repeat Simple_repeat 4 150 0 7745 19 0 0 chr11 117282623 117283941 -31499531 + L1PA2 LINE L1 4836 6154 -1 410 83 0 0 chr11 117283941 117284001 -31499471 - L1 LINE L1 -1813 4333 4274 * 1669 213 61 22 chr11 117283991 117284483 -31498989 + L1 LINE L1 2924 3434 -2712 873 133 13 0 chr11 117285001 117285151 -31498321 + L1 LINE L1 3287 3438 -2708 367 127 0 0 chr11 117286019 117286074 -31497398 - Alu SINE Alu -13 287 233 2398 57 34 0 chr11 117287104 117287400 -31496072 - AluY SINE Alu -5 306 1 21 0 0 0 chr11 117287731 117287752 -31495720 + AT_rich Low_complexity Low_complexity 1 21 0 567 350 91 58 chr11 117288193 117288854 -31494618 - L2 LINE L2 -12 3260 2589 42656 34 21 1 chr11 117288859 117294885 -31488587 + L1PA3 LINE L1 5 6155 0 25 83 0 0 chr11 117294885 117294945 -31488527 + AT_rich Low_complexity Low_complexity 1 60 0 988 191 9 58 chr11 117295413 117295638 -31487834 + MER20 DNA MER1_type 6 219 0 2164 72 48 10 chr11 117295947 117296239 -31487233 + AluY SINE Alu 1 303 -8 1699 181 0 3 chr11 117296700 117296988 -31486484 + AluJo SINE Alu 1 287 -25 312 136 0 0 chr11 117296993 117297037 -31486435 + (GA)n Simple_repeat Simple_repeat 1 44 0 875 137 11 22 chr11 117297037 117297219 -31486253 + GA-rich Low_complexity Low_complexity 1 180 0 2170 103 14 7 chr11 117297502 117297794 -31485678 + AluSx SINE Alu 1 294 -18 702 329 164 40 chr11 117298086 117299108 -31484364 + L2 LINE L2 1308 2456 -858 25 0 0 0 chr11 117299143 117299168 -31484304 + AT_rich Low_complexity Low_complexity 1 25 0 239 214 86 0 chr11 117299525 117299595 -31483877 + MLT1K LTR MaLR 511 586 -2 2225 98 0 3 chr11 117299627 117299922 -31483550 + AluSg SINE Alu 1 294 -16 618 220 135 30 chr11 117300287 117300487 -31482985 + MLT1J LTR MaLR 291 511 0 268 301 0 27 chr11 117300960 117301033 -31482439 + L2 LINE L2 3242 3312 -1 3403 255 64 78 chr11 117301453 117302365 -31481107 + L1ME LINE L1 202 1125 -5271 2268 96 0 3 chr11 117302365 117302668 -31480804 + AluSc SINE Alu 1 302 -7 3403 255 64 78 chr11 117302668 117302909 -31480563 + L1ME LINE L1 1125 1368 -5028 1479 184 112 9 chr11 117302909 117303240 -31480232 + MLT1A1 LTR MaLR 1 365 0 3403 255 64 78 chr11 117303240 117304203 -31479269 + L1ME LINE L1 1368 2290 -4106 22 56 0 0 chr11 117304249 117304285 -31479187 + AT_rich Low_complexity Low_complexity 1 36 0 533 107 0 0 chr11 117304344 117304419 -31479053 + Alu SINE Alu 222 296 -13 753 202 0 0 chr11 117304425 117304554 -31478918 + AluJ SINE Alu 1 129 -183 417 282 64 6 chr11 117304554 117304710 -31478762 + L1MEc LINE L1 2789 2953 -3262 647 223 101 0 chr11 117304712 117304841 -31478631 + AluJ SINE Alu 138 285 -27 228 35 0 0 chr11 117304841 117304870 -31478602 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 647 223 101 0 chr11 117304870 117304888 -31478584 + AluJ SINE Alu 285 300 -12 2816 244 103 13 chr11 117304899 117306154 -31477318 + L1ME LINE L1 2268 3635 -2580 1475 206 55 93 chr11 117306149 117306844 -31476628 + L1ME LINE L1 3973 4640 -1575 * 483 205 72 12 chr11 117306847 117307013 -31476459 + L1ME LINE L1 4949 5124 -1091 1528 192 51 0 chr11 117307013 117307305 -31476167 + AluJo SINE Alu 1 307 -5 446 212 154 9 chr11 117307403 117307570 -31475902 + L1ME LINE L1 5394 5583 -648 * 4028 161 54 4 chr11 117307558 117308523 -31474949 + L1M1 LINE L1 520 1666 -5899 222 301 32 32 chr11 117308528 117308621 -31474851 + L2 LINE L2 2227 2319 -995 181 99 28 70 chr11 117308789 117308860 -31474612 + T-rich Low_complexity Low_complexity 2 69 0 180 261 0 0 chr11 117309155 117309220 -31474252 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 1405 167 39 29 chr11 117309308 117309614 -31473858 + L1MA7 LINE L1 5981 6289 -2 24 0 0 0 chr11 117309650 117309674 -31473798 + AT_rich Low_complexity Low_complexity 1 24 0 234 62 0 0 chr11 117310229 117310261 -31473211 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 31 26 0 0 chr11 117310873 117310911 -31472561 + AT_rich Low_complexity Low_complexity 1 38 0 237 328 26 17 chr11 117311238 117311354 -31472118 + L2 LINE L2 1640 1756 -1558 1624 200 61 3 chr11 117313319 117313664 -31469808 - MLT1A1 LTR MaLR 0 365 1 228 67 0 0 chr11 117313873 117313903 -31469569 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 1149 243 38 0 chr11 117314306 117314594 -31468878 - L1MC4 LINE L1 -482 7560 7262 737 139 38 74 chr11 117314593 117314789 -31468683 - L1MC4 LINE L1 -795 7083 6829 * 26950 96 13 19 chr11 117314783 117321172 -31462300 - L1PA7 LINE L1 -2 6467 6 528 177 23 15 chr11 117321179 117321309 -31462163 - L1M4 LINE L1 -1399 4747 4617 352 205 26 0 chr11 117321582 117321660 -31461812 - MIR SINE MIR -2 260 181 579 301 24 6 chr11 117321736 117321902 -31461570 - MIR SINE MIR -93 169 1 750 293 63 26 chr11 117322951 117323302 -31460170 - MLT1J LTR MaLR -145 366 3 336 245 139 13 chr11 117323306 117323457 -31460015 + L2 LINE L2 3140 3309 -4 389 174 8 13 chr11 117323572 117323705 -31459767 - MER3 DNA MER1_type -16 193 1 384 270 0 36 chr11 117323863 117323974 -31459498 - MIR3 SINE MIR -16 192 86 237 139 0 0 chr11 117324133 117324169 -31459303 - L2 LINE L2 -91 3222 3187 33 25 0 0 chr11 117324910 117324950 -31458522 + AT_rich Low_complexity Low_complexity 1 40 0 230 123 18 53 chr11 117324991 117325048 -31458424 + T-rich Low_complexity Low_complexity 3 57 0 262 420 51 0 chr11 117325406 117325544 -31457928 - L2 LINE L2 0 3272 3128 1990 125 23 28 chr11 117325562 117325914 -31457558 - THE1B LTR MaLR 0 364 15 335 276 0 0 chr11 117326090 117326166 -31457306 + L2 LINE L2 2897 2972 -342 289 275 11 0 chr11 117326531 117326622 -31456850 - L1MC/D LINE L1 -1937 5871 5780 344 219 267 9 chr11 117326644 117326749 -31456723 + L2 LINE L2 3182 3313 0 305 345 11 58 chr11 117326840 117327014 -31456458 - L2 LINE L2 -208 3064 2899 1972 173 40 27 chr11 117327456 117327999 -31455473 - MLT2A2 LTR ERVL 0 554 1 22 80 0 0 chr11 117328765 117328815 -31454657 + AT_rich Low_complexity Low_complexity 1 50 0 3460 73 8 10 chr11 117329063 117329391 -31454081 - MER41A LTR ERV1 -74 480 152 5783 52 25 7 chr11 117329391 117330143 -31453329 + MER4E LTR ERV1 1 766 0 3460 73 8 10 chr11 117330143 117330295 -31453177 - MER41A LTR ERV1 -402 152 1 535 253 41 14 chr11 117331550 117331696 -31451776 - MIR SINE MIR -11 251 102 1213 158 20 0 chr11 117332938 117333141 -31450331 + MER3 DNA MER1_type 1 207 -2 671 224 40 15 chr11 117333490 117333691 -31449781 - LTR37B LTR ERV1 -59 409 204 2292 58 10 3 chr11 117334477 117334770 -31448702 - AluY SINE Alu -16 295 1 2350 97 0 3 chr11 117334979 117335287 -31448185 - AluSq SINE Alu -6 307 1 441 36 0 0 chr11 117335301 117335356 -31448116 - L1MA6 LINE L1 -14 6286 6232 356 117 17 17 chr11 117335366 117335426 -31448046 - MER5B DNA MER1_type -118 60 1 2992 36 3 0 chr11 117335486 117335843 -31447629 + L1PA3 LINE L1 5795 6152 -3 265 333 27 0 chr11 117335874 117335949 -31447523 + L2 LINE L2 2992 3068 -204 338 290 35 43 chr11 117336046 117336229 -31447243 - MIR SINE MIR -41 221 35 210 355 39 32 chr11 117336289 117336444 -31447028 - MER5B DNA MER1_type -21 157 2 1153 263 59 63 chr11 117337637 117338040 -31445432 + LTR33 LTR ERVL 30 432 -89 3907 116 40 32 chr11 117338040 117338686 -31444786 - L1PB3 LINE L1 -7 6147 5497 1153 263 59 63 chr11 117338686 117338773 -31444699 + LTR33 LTR ERVL 432 518 -3 628 295 119 45 chr11 117338870 117339161 -31444311 + L1MC/D LINE L1 2592 2860 -3286 1763 178 3 3 chr11 117339161 117339448 -31444024 + AluJo SINE Alu 1 287 -25 628 295 119 45 chr11 117339448 117339725 -31443747 + L1MC/D LINE L1 2860 3181 -2965 2286 59 7 13 chr11 117339725 117340030 -31443442 + AluY SINE Alu 1 303 -8 628 295 119 45 chr11 117340030 117340053 -31443419 + L1MC/D LINE L1 3181 3201 -2945 1916 138 22 19 chr11 117340268 117340579 -31442893 - AluSx SINE Alu 0 312 1 440 296 95 30 chr11 117340686 117341288 -31442184 + L1MC/D LINE L1 3612 4252 -1894 592 293 62 37 chr11 117341409 117341925 -31441547 + L1MC/D LINE L1 4513 5041 -1105 824 261 102 21 chr11 117342127 117342549 -31440923 + L1MC/D LINE L1 5276 5731 -2077 2164 235 54 23 chr11 117342550 117343107 -31440365 - MLT1E LTR MaLR -1 592 19 32 0 0 0 chr11 117343286 117343318 -31440154 + AT_rich Low_complexity Low_complexity 1 32 0 574 280 16 47 chr11 117343394 117343587 -31439885 + L2 LINE L2 3119 3305 -8 185 394 36 40 chr11 117344004 117344255 -31439217 - L2 LINE L2 -206 3066 2817 1192 106 12 6 chr11 117344819 117344989 -31438483 - AluSg/x SINE Alu -2 310 140 5743 184 22 31 chr11 117345017 117346211 -31437261 - ERVL LTR ERVL -3199 2565 1383 245 308 59 59 chr11 117346510 117346574 -31436898 + MLT1K LTR MaLR 25 88 -500 2224 100 3 7 chr11 117346574 117346873 -31436599 - AluSp SINE Alu -15 298 1 245 308 59 59 chr11 117346873 117347029 -31436443 + MLT1K LTR MaLR 87 245 -343 222 37 0 0 chr11 117347598 117347625 -31435847 + (CA)n Simple_repeat Simple_repeat 1 27 0 216 210 20 23 chr11 117347637 117347692 -31435780 + MER91 DNA MER1_type 22 69 -71 1315 260 77 55 chr11 117348736 117349585 -31433887 + L2 LINE L2 2453 3309 -4 216 178 0 0 chr11 117349585 117349630 -31433842 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 1097 41 48 0 chr11 117349851 117349996 -31433476 - L1PA10 LINE L1 -1 6167 6016 212 0 0 35 chr11 117350729 117350758 -31432714 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 1758 153 0 21 chr11 117350761 117351049 -31432423 - AluJo SINE Alu -30 282 1 737 258 15 4 chr11 117351308 117351568 -31431904 - L1M4 LINE L1 -2904 3242 2980 2384 192 38 31 chr11 117351577 117351674 -31431798 - MER68 LTR ERV1 -10 552 457 5175 67 46 0 chr11 117351674 117352332 -31431140 + LTR12 LTR ERV1 1 688 0 2384 192 38 31 chr11 117352332 117352373 -31431099 - MER68 LTR ERV1 -105 457 418 2403 99 0 0 chr11 117352373 117352686 -31430786 + AluSq SINE Alu 1 313 0 2384 192 38 31 chr11 117352686 117353094 -31430378 - MER68 LTR ERV1 -144 418 1 340 264 42 5 chr11 117353101 117353258 -31430214 - L1M4 LINE L1 -3171 2975 2804 962 220 18 81 chr11 117353307 117353376 -31430096 - L1M4 LINE L1 -3337 2809 2737 834 209 256 28 chr11 117353376 117353735 -31429737 - LTR47B LTR ERVL 0 443 3 962 220 18 81 chr11 117353735 117353882 -31429590 - L1M4 LINE L1 -3409 2737 2625 2397 80 0 32 chr11 117353882 117354196 -31429276 - AluY SINE Alu -7 304 1 962 220 18 81 chr11 117354196 117354360 -31429112 - L1M4 LINE L1 -3521 2625 2452 * 3608 204 43 14 chr11 117354359 117355786 -31427686 + L1ME1 LINE L1 4697 6162 -4 352 271 23 0 chr11 117355865 117355994 -31427478 - L1ME3A LINE L1 -22 6148 6017 1917 212 114 55 chr11 117356100 117356673 -31426799 + MER77 LTR ERV1 57 728 -7 532 262 74 8 chr11 117356686 117356900 -31426572 - L1ME3A LINE L1 -252 5918 5692 695 288 107 4 chr11 117357055 117357288 -31426184 - MIR SINE MIR 0 262 6 230 296 0 0 chr11 117357304 117357392 -31426080 - L1M4 LINE L1 -2694 3452 3365 807 239 15 15 chr11 117358158 117358359 -31425113 + L2 LINE L2 3108 3308 -5 193 296 14 42 chr11 117358387 117358458 -31425014 - L2 LINE L2 -8 3264 3196 388 280 48 42 chr11 117359842 117360183 -31423289 + L1MEc LINE L1 777 1089 -5858 339 285 177 25 chr11 117360583 117360741 -31422731 + L1MEc LINE L1 1354 1535 -5324 321 245 32 96 chr11 117360751 117360939 -31422533 + L1MEc LINE L1 1741 1916 -5031 * 460 342 75 9 chr11 117360918 117361146 -31422326 + L1MEc LINE L1 2320 2562 -4576 346 276 59 15 chr11 117361179 117361382 -31422090 + L1MEc LINE L1 2666 2877 -4261 402 272 142 18 chr11 117361768 117361937 -31421535 - MIR SINE MIR 0 262 73 23 0 0 0 chr11 117362292 117362315 -31421157 + AT_rich Low_complexity Low_complexity 1 23 0 278 209 93 70 chr11 117362316 117362402 -31421070 + L2 LINE L2 3138 3225 -47 1720 161 20 13 chr11 117362422 117362720 -31420752 - AluSx SINE Alu -12 300 1 5424 144 23 8 chr11 117362731 117363965 -31419507 - L1MB3 LINE L1 -3 6180 4934 27 29 0 0 chr11 117364558 117364592 -31418880 + AT_rich Low_complexity Low_complexity 1 34 0 230 241 56 0 chr11 117364792 117364846 -31418626 + L3 LINE CR1 1518 1574 -3 2212 104 3 0 chr11 117365832 117366121 -31417351 - AluSp SINE Alu -21 292 3 22 0 0 0 chr11 117366123 117366145 -31417327 + AT_rich Low_complexity Low_complexity 1 22 0 1938 159 7 3 chr11 117366551 117366860 -31416612 - AluJb SINE Alu -2 310 1 5764 106 20 9 chr11 117367079 117368309 -31415163 + L1PA15 LINE L1 4915 6162 -3 1897 161 0 3 chr11 117369613 117369904 -31413568 - AluJb SINE Alu -22 290 1 409 281 120 38 chr11 117369956 117370248 -31413224 + L1ME LINE L1 5363 5678 -443 428 361 75 4 chr11 117370261 117370488 -31412984 - MIR SINE MIR 0 262 20 5225 154 44 24 chr11 117370608 117370984 -31412488 + L1MA8 LINE L1 4897 5264 -1027 1691 170 7 24 chr11 117370984 117371307 -31412165 + AluJb SINE Alu 1 318 0 5225 154 44 24 chr11 117371307 117372288 -31411184 + L1MA8 LINE L1 5264 6277 -14 25 31 0 0 chr11 117372298 117372330 -31411142 + AT_rich Low_complexity Low_complexity 1 32 0 1088 158 190 32 chr11 117372555 117372654 -31410818 - AluJo SINE Alu -26 286 204 3654 65 13 63 chr11 117372654 117373192 -31410280 + MER9 LTR ERVK 1 511 0 1088 158 190 32 chr11 117373192 117373339 -31410133 - AluJo SINE Alu -108 204 1 2222 124 3 0 chr11 117373346 117373652 -31409820 - AluSp SINE Alu -6 307 1 26 74 0 0 chr11 117373652 117373706 -31409766 + AT_rich Low_complexity Low_complexity 1 54 0 1460 161 0 0 chr11 117373796 117374032 -31409440 - MER46A DNA MER2_type 0 236 1 530 330 70 0 chr11 117374038 117374238 -31409234 + MIR SINE MIR 48 261 -1 228 225 56 56 chr11 117374431 117374502 -31408970 - L2 LINE L2 -7 3306 3236 21 0 0 0 chr11 117374947 117374968 -31408504 + AT_rich Low_complexity Low_complexity 1 21 0 1816 182 30 0 chr11 117375073 117375403 -31408069 - MER2 DNA MER2_type 0 345 6 385 293 98 8 chr11 117375926 117376059 -31407413 + MIR SINE MIR 11 155 -107 304 345 42 8 chr11 117376085 117376204 -31407268 + MIR SINE MIR 32 154 -108 573 204 19 0 chr11 117376961 117377069 -31406403 + AluJb SINE Alu 191 300 -12 698 163 0 16 chr11 117377074 117377197 -31406275 + L1MA8 LINE L1 5495 5615 -676 307 153 0 4 chr11 117377240 117377299 -31406173 + MER52A LTR ERV1 382 1142 -197 3593 139 26 37 chr11 117377308 117377847 -31405625 + L1MA8 LINE L1 5593 6125 -166 2409 86 3 0 chr11 117377847 117378148 -31405324 - AluSx SINE Alu -10 302 1 3593 139 26 37 chr11 117378148 117378291 -31405181 + L1MA8 LINE L1 6125 6268 -23 1841 149 0 20 chr11 117378310 117378605 -31404867 - AluJo SINE Alu -18 294 6 25 65 0 0 chr11 117378812 117378858 -31404614 + AT_rich Low_complexity Low_complexity 1 46 0 24 0 0 0 chr11 117380066 117380090 -31403382 + AT_rich Low_complexity Low_complexity 1 24 0 337 245 73 5 chr11 117380100 117380270 -31403202 + L1MEc LINE L1 2329 2472 -3912 2132 239 70 28 chr11 117380274 117381420 -31402052 - L1ME LINE L1 -432 5732 4530 26 0 0 0 chr11 117381587 117381613 -31401859 + AT_rich Low_complexity Low_complexity 1 26 0 2299 241 82 14 chr11 117381846 117382582 -31400890 - L1ME LINE L1 -1737 4409 3624 410 0 0 0 chr11 117382604 117382650 -31400822 - L1PA4 LINE L1 -10 6145 6100 1022 245 25 12 chr11 117383313 117383554 -31399918 + MIR SINE MIR 6 249 -13 881 265 26 77 chr11 117383664 117383756 -31399716 - Charlie8 DNA MER1_type -1945 472 377 2380 75 3 0 chr11 117383756 117384048 -31399424 - AluSg SINE Alu -17 293 1 881 265 26 77 chr11 117384048 117384370 -31399102 - Charlie8 DNA MER1_type -2040 377 79 219 195 0 37 chr11 117384760 117384842 -31398630 + CT-rich Low_complexity Low_complexity 2 80 0 351 0 0 0 chr11 117384847 117384886 -31398586 + (CA)n Simple_repeat Simple_repeat 2 40 0 1430 234 47 41 chr11 117385639 117385936 -31397536 + L1MC4 LINE L1 7505 7808 -234 1010 205 49 0 chr11 117385936 117386141 -31397331 - MER58C DNA MER1_type 0 215 1 1430 234 47 41 chr11 117386141 117386378 -31397094 + L1MC4 LINE L1 7808 8042 0 564 286 63 11 chr11 117386778 117386951 -31396521 - MER5A DNA MER1_type 0 189 8 353 310 71 0 chr11 117386951 117387064 -31396408 + MIR SINE MIR 1 121 -141 21 71 0 0 chr11 117387180 117387222 -31396250 + AT_rich Low_complexity Low_complexity 1 42 0 249 234 0 0 chr11 117387581 117387628 -31395844 + MIR SINE MIR 216 262 0 267 263 81 0 chr11 117387976 117388075 -31395397 + L1MC4 LINE L1 7924 8030 -12 2071 113 0 3 chr11 117388082 117388366 -31395106 + AluSx SINE Alu 1 283 -29 216 0 0 0 chr11 117388371 117388395 -31395077 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 6265 78 6 5 chr11 117389002 117389865 -31393607 - L1PB1 LINE L1 0 6151 5288 1463 170 145 6 chr11 117389865 117390176 -31393296 + MER45B DNA AcHobo 97 450 -590 2307 146 23 10 chr11 117390176 117390561 -31392911 + MER57A LTR ERV1 1 390 -13 622 146 0 36 chr11 117390565 117390675 -31392797 + MER45B DNA AcHobo 447 552 -488 2660 236 37 18 chr11 117390695 117391323 -31392149 - MER76 LTR ERV -46 642 3 1922 192 67 40 chr11 117391326 117391513 -31391959 + MER45B DNA AcHobo 549 729 -852 3296 73 24 4 chr11 117391513 117391967 -31391505 + L1PA11 LINE L1 5712 6174 0 1922 192 67 40 chr11 117391967 117392258 -31391214 + MER45B DNA AcHobo 729 1040 0 31 44 0 0 chr11 117392457 117392502 -31390970 + AT_rich Low_complexity Low_complexity 1 45 0 2123 128 10 0 chr11 117393557 117393862 -31389610 + AluSx SINE Alu 1 308 -4 180 26 26 51 chr11 117393920 117393959 -31389513 + (CAAAAA)n Simple_repeat Simple_repeat 2 39 0 22 56 0 0 chr11 117395036 117395072 -31388400 + AT_rich Low_complexity Low_complexity 1 36 0 243 306 6 3 chr11 117395874 117395969 -31387503 + MER5A DNA MER1_type 1 106 -82 409 249 151 50 chr11 117396028 117396575 -31386897 + L1MEd LINE L1 780 1390 -4862 367 218 234 0 chr11 117396658 117396782 -31386690 + L1MA10 LINE L1 6175 6327 -7 1823 167 0 3 chr11 117396870 117397157 -31386315 + AluJb SINE Alu 3 288 -24 1864 104 4 0 chr11 117397341 117397592 -31385880 + AluSg1 SINE Alu 44 295 -14 26 0 0 0 chr11 117397894 117397920 -31385552 + AT_rich Low_complexity Low_complexity 1 26 0 414 0 0 0 chr11 117399058 117399104 -31384368 + (CA)n Simple_repeat Simple_repeat 1 46 0 491 208 33 77 chr11 117400779 117400962 -31382510 + MLT1L LTR MaLR 441 615 0 198 196 0 118 chr11 117403037 117403088 -31380384 + L3 LINE CR1 1523 1567 -10 2382 86 0 3 chr11 117403089 117403393 -31380079 - AluY SINE Alu -8 303 1 248 299 35 11 chr11 117403524 117403611 -31379861 + MIR SINE MIR 125 213 -49 252 319 67 17 chr11 117404491 117404610 -31378862 - L2 LINE L2 -10 3262 3138 765 221 6 6 chr11 117405045 117405208 -31378264 + MLT1B LTR MaLR 182 344 -46 2325 85 3 3 chr11 117405654 117405973 -31377499 + AluSq SINE Alu 1 319 0 24 0 0 0 chr11 117406296 117406320 -31377152 + AT_rich Low_complexity Low_complexity 1 24 0 24 67 0 0 chr11 117406396 117406441 -31377031 + AT_rich Low_complexity Low_complexity 1 45 0 37 52 0 0 chr11 117406457 117406515 -31376957 + AT_rich Low_complexity Low_complexity 1 58 0 771 301 62 12 chr11 117406810 117407149 -31376323 + L1MC/D LINE L1 5468 5823 -1985 2312 93 0 3 chr11 117409220 117409520 -31373952 + AluY SINE Alu 1 299 -12 381 208 14 0 chr11 117410147 117410219 -31373253 - MER3 DNA MER1_type -134 75 3 2386 86 6 6 chr11 117410240 117410553 -31372919 + AluSq SINE Alu 1 313 0 356 284 98 0 chr11 117410783 117410885 -31372587 + L2 LINE L2 3152 3263 -9 217 261 168 80 chr11 117411583 117411809 -31371663 - MIR SINE MIR -11 251 6 411 260 215 6 chr11 117412210 117412387 -31371085 - MER58C DNA MER1_type 0 215 2 2163 97 44 39 chr11 117413166 117413527 -31369945 + THE1B LTR MaLR 2 364 0 216 294 0 20 chr11 117414088 117414139 -31369333 + MIR SINE MIR 23 72 -136 213 370 17 34 chr11 117414574 117414693 -31368779 + MIR SINE MIR 20 136 -126 232 290 106 31 chr11 117415835 117416042 -31367430 + L2 LINE L2 3035 3302 -11 2046 118 28 3 chr11 117416265 117416553 -31366919 + AluSq SINE Alu 1 295 -18 22 0 0 0 chr11 117416999 117417021 -31366451 + AT_rich Low_complexity Low_complexity 1 22 0 274 290 93 56 chr11 117417472 117417579 -31365893 + L2 LINE L2 3116 3226 -46 523 269 109 40 chr11 117417587 117417762 -31365710 + MIR SINE MIR 3 189 -73 24 0 0 0 chr11 117417762 117417786 -31365686 + AT_rich Low_complexity Low_complexity 1 24 0 23 68 0 0 chr11 117418874 117418918 -31364554 + AT_rich Low_complexity Low_complexity 1 44 0 492 249 44 54 chr11 117418939 117419144 -31364328 + L2 LINE L2 3106 3308 -5 648 102 10 10 chr11 117420275 117420373 -31363099 + MER4A LTR ERV1 1 98 -566 1904 93 157 88 chr11 117420388 117420764 -31362708 + MER4A LTR ERV1 263 664 0 850 183 20 25 chr11 117421607 117421804 -31361668 + MER3 DNA MER1_type 10 205 -4 2166 140 35 28 chr11 117422119 117422519 -31360953 - MER57A LTR ERV1 0 403 1 350 148 16 0 chr11 117423115 117423176 -31360296 - MER58 DNA MER1_type -2 2418 2357 1310 126 5 0 chr11 117423182 117423373 -31360099 - AluSg/x SINE Alu 0 310 119 2238 100 10 3 chr11 117423382 117423692 -31359780 - AluSq SINE Alu -1 312 1 251 198 91 83 chr11 117423692 117423805 -31359667 - MER58 DNA MER1_type -98 117 1 4019 117 69 49 chr11 117423990 117424760 -31358712 - LTR1 LTR ERV1 0 785 1 396 317 133 26 chr11 117424761 117425070 -31358402 - MLT1L LTR MaLR -2 613 272 225 0 0 0 chr11 117425086 117425111 -31358361 + (T)n Simple_repeat Simple_repeat 1 25 0 1919 225 110 18 chr11 117425133 117425706 -31357766 + MLT1E2 LTR MaLR 1 626 0 400 288 14 68 chr11 117425706 117425926 -31357546 - MLT1L LTR MaLR -407 208 1 896 190 0 0 chr11 117426018 117426155 -31357317 + FRAM SINE Alu 1 132 -44 26 0 0 0 chr11 117426879 117426905 -31356567 + AT_rich Low_complexity Low_complexity 1 26 0 845 230 184 41 chr11 117427205 117427792 -31355680 - Charlie7 DNA MER1_type -1886 726 56 220 323 86 11 chr11 117427835 117427928 -31355544 + MER5A DNA MER1_type 4 103 -86 231 196 0 22 chr11 117427986 117428032 -31355440 + MER5A DNA MER1_type 102 146 -43 40 73 0 0 chr11 117428227 117428309 -31355163 + AT_rich Low_complexity Low_complexity 1 82 0 22 0 0 30 chr11 117428385 117428397 -31355075 + AT_rich Low_complexity Low_complexity 1 12 -20 2024 116 3 11 chr11 117428397 117428681 -31354791 - AluSc SINE Alu -1 308 27 22 0 0 30 chr11 117428681 117428701 -31354771 + AT_rich Low_complexity Low_complexity 12 32 0 2178 98 0 3 chr11 117428748 117429064 -31354408 - AluSx SINE Alu 0 315 1 529 216 115 7 chr11 117429127 117429275 -31354197 - MIR SINE MIR -50 212 49 1240 221 29 86 chr11 117429782 117429875 -31353597 + MLT1A1 LTR MaLR 1 98 -267 2471 85 0 0 chr11 117429875 117430181 -31353291 + AluSq SINE Alu 1 306 -7 1240 221 29 86 chr11 117430181 117430472 -31353000 + MLT1A1 LTR MaLR 98 363 -2 3462 140 26 76 chr11 117430988 117431715 -31351757 + LTR8 LTR ERV1 1 691 0 216 0 0 0 chr11 117432465 117432489 -31350983 + (T)n Simple_repeat Simple_repeat 1 24 0 3739 105 61 5 chr11 117433426 117434034 -31349438 + L1MA2 LINE L1 5663 6304 0 1032 195 15 10 chr11 117434045 117434240 -31349232 - AluJo SINE Alu -116 196 1 2237 111 3 3 chr11 117434305 117434602 -31348870 - AluSg SINE Alu -13 297 1 231 260 104 21 chr11 117434604 117434700 -31348772 + L2 LINE L2 3200 3303 -10 244 283 11 87 chr11 117434761 117434853 -31348619 + MIR3 SINE MIR 98 182 -26 2478 63 7 0 chr11 117435010 117435313 -31348159 - AluY SINE Alu -6 305 1 266 242 0 15 chr11 117435858 117435924 -31347548 + A-rich Low_complexity Low_complexity 5 69 0 676 257 127 21 chr11 117436107 117436344 -31347128 + MIR SINE MIR 1 262 0 428 240 39 65 chr11 117436752 117436906 -31346566 - MER5A DNA MER1_type -2 187 38 372 116 72 0 chr11 117437774 117437843 -31345629 + MIR SINE MIR 189 262 0 334 327 117 19 chr11 117438405 117438567 -31344905 + L2 LINE L2 3090 3267 -5 203 186 0 34 chr11 117438808 117438867 -31344605 + (TCCA)n Simple_repeat Simple_repeat 4 60 0 33 25 0 0 chr11 117439016 117439056 -31344416 + AT_rich Low_complexity Low_complexity 1 40 0 1906 134 0 4 chr11 117439140 117439408 -31344064 + AluSx SINE Alu 1 267 -45 705 189 8 15 chr11 117441206 117441338 -31342134 - FLAM_A SINE Alu -2 131 1 365 301 0 0 chr11 117441474 117441557 -31341915 + L2 LINE L2 3186 3268 -4 186 311 101 42 chr11 117442593 117442712 -31340760 - L2 LINE L2 0 3272 3147 503 252 35 28 chr11 117443356 117443499 -31339973 + L2 LINE L2 3155 3298 -15 313 319 69 0 chr11 117443567 117443683 -31339789 - L2 LINE L2 -189 3083 2960 180 0 0 0 chr11 117443683 117443703 -31339769 + (T)n Simple_repeat Simple_repeat 1 20 0 370 231 22 11 chr11 117444315 117444406 -31339066 - MIR SINE MIR -76 186 95 801 145 43 32 chr11 117445767 117445953 -31337519 + MER53 DNA DNA 1 188 -1 186 351 14 14 chr11 117446110 117446184 -31337288 - L2 LINE L2 -5 3267 3194 214 326 189 13 chr11 117446355 117446588 -31336884 - L2 LINE L2 -1763 1551 1278 23 86 0 0 chr11 117446745 117446803 -31336669 + AT_rich Low_complexity Low_complexity 1 58 0 837 298 163 16 chr11 117449102 117449588 -31333884 + L3 LINE CR1 471 1027 -550 202 380 89 0 chr11 117449634 117449713 -31333759 + L3 LINE CR1 1473 1558 -19 1090 158 58 37 chr11 117450255 117450678 -31332794 - MLT2B1 LTR ERVL 0 520 1 712 221 55 67 chr11 117450799 117451052 -31332420 + LTR67 LTR ERVL 286 535 -22 231 191 15 44 chr11 117451374 117451442 -31332030 + HsTC2b DNA Tc2 1 66 -699 2260 123 3 0 chr11 117451592 117451902 -31331570 + AluSx SINE Alu 2 312 0 620 187 40 0 chr11 117452238 117452388 -31331084 - L1MC5 LINE L1 -116 7845 7690 25 31 0 0 chr11 117452425 117452457 -31331015 + AT_rich Low_complexity Low_complexity 1 32 0 198 103 0 0 chr11 117452993 117453022 -31330450 + (TTC)n Simple_repeat Simple_repeat 2 30 0 3166 256 140 55 chr11 117453266 117453539 -31329933 - HAL1 LINE L1 -177 2330 2082 2107 135 10 3 chr11 117453539 117453843 -31329629 - AluSx SINE Alu -6 306 1 3166 256 140 55 chr11 117453843 117455386 -31328086 - HAL1 LINE L1 -425 2082 344 1992 152 0 9 chr11 117455386 117455701 -31327771 + AluSx SINE Alu 1 312 0 3166 256 140 55 chr11 117455701 117455777 -31327695 - HAL1 LINE L1 -2163 344 276 1706 109 0 20 chr11 117455794 117456041 -31327431 + AluSg/x SINE Alu 71 312 0 192 319 29 0 chr11 117456070 117456139 -31327333 - L2 LINE L2 -1255 2059 1989 444 161 245 7 chr11 117456647 117456790 -31326682 + MER104 DNA Tc2 1 177 -3 1726 159 10 19 chr11 117457317 117457631 -31325841 - AluJb SINE Alu -1 311 1 181 81 27 27 chr11 117458156 117458193 -31325279 + (TTTTC)n Simple_repeat Simple_repeat 4 40 0 2118 90 58 0 chr11 117458683 117458960 -31324512 + AluSx SINE Alu 1 293 -19 451 144 144 27 chr11 117459026 117459172 -31324300 + L1MA7 LINE L1 6125 6287 -4 1974 145 3 7 chr11 117459507 117459817 -31323655 + AluJb SINE Alu 1 309 -3 252 86 0 0 chr11 117460156 117460191 -31323281 + (A)n Simple_repeat Simple_repeat 1 35 0 902 260 24 4 chr11 117461086 117461340 -31322132 + MIR SINE MIR 3 261 -1 1895 153 20 0 chr11 117462524 117462818 -31320654 + AluSx SINE Alu 1 300 -12 768 230 4 52 chr11 117462986 117463234 -31320238 + L1PA16 LINE L1 4889 5124 -1022 4793 105 60 3 chr11 117463431 117464244 -31319228 + L1PA16 LINE L1 5292 6157 -9 349 335 51 17 chr11 117464712 117464888 -31318584 + L2 LINE L2 2465 2646 -668 580 304 82 40 chr11 117464947 117465196 -31318276 - MIR SINE MIR 0 262 2 673 318 116 32 chr11 117465555 117465996 -31317476 + L2 LINE L2 2163 2640 -674 2196 76 14 4 chr11 117466067 117466362 -31317110 - AluSc SINE Alu 0 298 1 36 0 0 0 chr11 117467068 117467104 -31316368 + AT_rich Low_complexity Low_complexity 1 36 0 202 271 21 0 chr11 117467108 117467156 -31316316 + L2 LINE L2 3265 3313 0 437 204 0 27 chr11 117467170 117467317 -31316155 + GA-rich Low_complexity Low_complexity 3 145 0 246 62 0 0 chr11 117467592 117467624 -31315848 + (TC)n Simple_repeat Simple_repeat 2 33 0 317 177 0 0 chr11 117467626 117467684 -31315788 - AluS SINE Alu -28 273 222 325 240 193 52 chr11 117471492 117471684 -31311788 - L1M4 LINE L1 -877 5269 5051 337 241 75 156 chr11 117472003 117472414 -31311058 + L1MC5 LINE L1 6838 7215 -746 333 242 98 82 chr11 117472533 117472950 -31310522 + L1MC5 LINE L1 7311 7734 -227 800 222 13 67 chr11 117473680 117473919 -31309553 + Charlie1 DNA MER1_type 1 226 -2535 514 40 14 14 chr11 117473948 117474022 -31309450 + (TAGA)n Simple_repeat Simple_repeat 1 74 0 226 143 0 0 chr11 117474033 117474075 -31309397 + Charlie1 DNA MER1_type 2687 2728 -33 2115 133 0 0 chr11 117474201 117474503 -31308969 - AluSx SINE Alu -10 302 1 2129 112 3 3 chr11 117475331 117475634 -31307838 + AluSq SINE Alu 1 303 -10 1049 83 0 0 chr11 117475719 117475851 -31307621 + AluY SINE Alu 1 132 -179 575 204 19 0 chr11 117476621 117476729 -31306743 + AluJb SINE Alu 191 300 -12 659 163 0 16 chr11 117476734 117476857 -31306615 + L1MA8 LINE L1 5495 5615 -676 291 153 0 4 chr11 117476900 117476959 -31306513 + MER52A LTR ERV1 382 1142 -197 2682 145 31 24 chr11 117476969 117477508 -31305964 + L1MA8 LINE L1 5593 6135 -156 2383 96 0 0 chr11 117477508 117477809 -31305663 - AluSg1 SINE Alu -8 301 1 2195 80 14 11 chr11 117477945 117478231 -31305241 - AluSg1 SINE Alu -21 288 2 2082 104 0 77 chr11 117478627 117478954 -31304518 + AluSx SINE Alu 1 302 -10 2063 144 0 0 chr11 117479559 117479681 -31303791 + AluSx SINE Alu 1 122 -190 216 0 0 0 chr11 117479681 117479705 -31303767 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2063 144 0 0 chr11 117479705 117479880 -31303592 + AluSx SINE Alu 121 298 -14 2558 43 0 0 chr11 117480041 117480340 -31303132 - AluY SINE Alu -12 299 1 1306 90 16 0 chr11 117480481 117480670 -31302802 - AluY SINE Alu -1 310 119 2221 108 3 3 chr11 117482639 117482935 -31300537 - AluSq SINE Alu -17 296 1 494 168 112 8 chr11 117482935 117483016 -31300456 - L1MC3 LINE L1 -565 7220 7120 2023 146 3 0 chr11 117483016 117483317 -31300155 - AluSx SINE Alu -10 302 1 494 168 112 8 chr11 117483317 117483360 -31300112 - L1MC3 LINE L1 -665 7120 7083 * 730 237 52 9 chr11 117483356 117483567 -31299905 - L1MD3 LINE L1 -1048 6947 6728 21 0 0 0 chr11 117486509 117486530 -31296942 + AT_rich Low_complexity Low_complexity 1 21 0 2241 117 7 0 chr11 117487226 117487533 -31295939 + AluSc SINE Alu 1 309 0 266 287 46 19 chr11 117488162 117488270 -31295202 - MIR SINE MIR -71 191 81 2215 110 0 0 chr11 117488385 117488677 -31294795 + AluSq SINE Alu 1 292 -21 482 287 37 22 chr11 117489150 117489286 -31294186 - MIR3 SINE MIR -38 170 33 239 244 13 0 chr11 117489546 117489624 -31293848 + (CATATA)n Simple_repeat Simple_repeat 5 83 0 1678 26 0 0 chr11 117489626 117489820 -31293652 - L1PA4 LINE L1 -11 6144 5951 1458 156 0 5 chr11 117491009 117491233 -31292239 + AluJo SINE Alu 1 223 -89 26 0 0 0 chr11 117491395 117491421 -31292051 + AT_rich Low_complexity Low_complexity 1 26 0 195 116 0 70 chr11 117492646 117492689 -31290783 + L3b LINE CR1 1266 1305 -278 547 176 10 23 chr11 117493306 117493497 -31289975 + CT-rich Low_complexity Low_complexity 1 188 0 2307 101 0 3 chr11 117494979 117495286 -31288186 - AluSc SINE Alu -3 306 1 38 51 0 0 chr11 117495566 117495625 -31287847 + AT_rich Low_complexity Low_complexity 1 59 0 240 255 107 29 chr11 117495635 117495878 -31287594 - L1ME4a LINE L1 -69 6052 5791 1634 99 232 0 chr11 117499719 117500012 -31283460 + MER46B DNA MER2_type 1 236 0 2303 100 0 10 chr11 117500243 117500552 -31282920 - AluSg SINE Alu -4 306 1 229 200 0 0 chr11 117500985 117501030 -31282442 + MER116 DNA Mariner 10 54 -26 354 361 138 52 chr11 117501111 117501278 -31282194 + L3 LINE CR1 986 1137 -440 2100 144 0 6 chr11 117501278 117501591 -31281881 + AluSx SINE Alu 1 311 -1 354 361 138 52 chr11 117501591 117501849 -31281623 + L3 LINE CR1 1137 1448 -129 476 174 0 22 chr11 117502102 117502194 -31281278 - FLAM SINE Alu -11 132 43 306 325 0 0 chr11 117502623 117502700 -31280772 - L2 LINE L2 -10 3262 3186 193 208 42 0 chr11 117503874 117503922 -31279550 + L2 LINE L2 3264 3313 0 237 291 110 71 chr11 117503997 117504124 -31279348 - MIR SINE MIR -71 191 60 204 304 0 0 chr11 117504154 117504200 -31279272 - L2 LINE L2 -83 3189 3144 2416 100 0 0 chr11 117504232 117504541 -31278931 + AluSx SINE Alu 1 309 -3 485 226 77 32 chr11 117505115 117505307 -31278165 - MIR SINE MIR 0 262 64 265 195 27 53 chr11 117505393 117505474 -31277998 + MIR SINE MIR 105 181 -81 577 270 57 43 chr11 117505474 117505685 -31277787 + MER58A DNA MER1_type 1 214 -10 1816 158 7 11 chr11 117505688 117505993 -31277479 + AluJo SINE Alu 3 306 0 1079 142 0 0 chr11 117506835 117506990 -31276482 - AluSg/x SINE Alu -22 290 136 1964 122 0 0 chr11 117507865 117508136 -31275336 + AluSx SINE Alu 34 304 -8 207 0 0 0 chr11 117508762 117508785 -31274687 + (T)n Simple_repeat Simple_repeat 1 23 0 1306 90 16 0 chr11 117508910 117509099 -31274373 + AluY SINE Alu 119 310 -1 2558 43 0 0 chr11 117509240 117509539 -31273933 + AluY SINE Alu 1 299 -12 2126 120 0 7 chr11 117509700 117509999 -31273473 - AluSg1 SINE Alu -12 297 1 2195 80 14 11 chr11 117510135 117510421 -31273051 - AluSg1 SINE Alu -21 288 2 2053 107 0 77 chr11 117510817 117511143 -31272329 + AluSx SINE Alu 1 301 -11 2006 146 0 0 chr11 117511748 117511870 -31271602 + AluSx SINE Alu 1 122 -190 216 0 0 0 chr11 117511870 117511894 -31271578 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2006 146 0 0 chr11 117511894 117512059 -31271413 + AluSx SINE Alu 121 288 -24 801 145 43 32 chr11 117514212 117514398 -31269074 + MER53 DNA DNA 1 188 -1 186 351 14 14 chr11 117514555 117514629 -31268843 - L2 LINE L2 -5 3267 3194 353 211 31 25 chr11 117517252 117517413 -31266059 + CT-rich Low_complexity Low_complexity 3 164 0 243 244 0 0 chr11 117517413 117517458 -31266014 + polypyrimidine Low_complexity Low_complexity 5 49 0 2236 76 7 0 chr11 117518945 117519245 -31264227 - AluSc SINE Alu 0 302 1 2272 151 42 13 chr11 117519247 117519698 -31263774 - L1MC3 LINE L1 -103 7682 7219 210 37 0 0 chr11 117519698 117519725 -31263747 + (T)n Simple_repeat Simple_repeat 1 27 0 192 289 19 0 chr11 117569753 117569805 -31213667 - MIR SINE MIR -131 131 79 905 124 8 0 chr11 117569806 117569935 -31213537 + FLAM_C SINE Alu 2 131 -12 319 360 77 17 chr11 117569980 117570213 -31213259 - L2 LINE L2 -1311 2003 1757 2025 103 0 50 chr11 117570226 117570528 -31212944 + AluSx SINE Alu 1 287 -25 198 0 0 0 chr11 117570528 117570550 -31212922 + (TA)n Simple_repeat Simple_repeat 2 23 0 228 316 154 8 chr11 117570685 117570802 -31212670 + L2 LINE L2 3175 3308 -5 424 286 9 9 chr11 117570985 117571090 -31212382 + MIR3 SINE MIR 98 202 -6 2210 83 4 0 chr11 117572196 117572523 -31210949 + AluSx SINE Alu 3 330 0 25 0 0 0 chr11 117573939 117573964 -31209508 + AT_rich Low_complexity Low_complexity 1 25 0 201 192 58 0 chr11 117574768 117574820 -31208652 + (AATTG)n Simple_repeat Simple_repeat 4 58 0 1239 37 0 19 chr11 117575288 117575449 -31208023 + L1PA4 LINE L1 5995 6152 -3 28 0 0 0 chr11 117575668 117575696 -31207776 + GC_rich Low_complexity Low_complexity 1 28 0 243 61 0 0 chr11 117575713 117575746 -31207726 + (A)n Simple_repeat Simple_repeat 1 33 0 2352 102 0 0 chr11 117575802 117576107 -31207365 - AluY SINE Alu -6 305 1 1664 132 100 0 chr11 117576290 117576540 -31206932 + AluSx SINE Alu 1 275 -37 1741 163 12 58 chr11 117577009 117577334 -31206138 - AluJo SINE Alu -2 310 1 1333 146 142 20 chr11 117577871 117578117 -31205355 + AluJb SINE Alu 12 287 -25 471 304 149 62 chr11 117578187 117578505 -31204967 + L2 LINE L2 1350 1639 -1675 781 215 73 6 chr11 117578505 117578682 -31204790 + MER5A DNA MER1_type 1 189 0 471 304 149 62 chr11 117578682 117578822 -31204650 + L2 LINE L2 1639 1765 -1549 1573 191 0 37 chr11 117578822 117579120 -31204352 - AluJo SINE Alu -25 287 1 471 304 149 62 chr11 117579120 117579218 -31204254 + L2 LINE L2 1765 1853 -1461 612 145 120 17 chr11 117579218 117579335 -31204137 + FLAM_C SINE Alu 1 129 -4 471 304 149 62 chr11 117579335 117579664 -31203808 + L2 LINE L2 1853 2314 -1000 24 0 0 0 chr11 117579881 117579905 -31203567 + AT_rich Low_complexity Low_complexity 1 24 0 1911 128 40 0 chr11 117580378 117580676 -31202796 + AluJb SINE Alu 1 310 -2 185 0 40 0 chr11 117580700 117580725 -31202747 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 2056 125 7 0 chr11 117580765 117580899 -31202573 + AluY SINE Alu 1 133 -178 2532 71 0 3 chr11 117580899 117581210 -31202262 + AluY SINE Alu 1 310 -1 2056 125 7 0 chr11 117581210 117581370 -31202102 + AluY SINE Alu 133 297 -14 1249 224 98 46 chr11 117582024 117582462 -31201010 - MLT1C LTR MaLR -1 466 6 862 159 35 148 chr11 117582467 117582750 -31200722 - MLT1C-int LTR MaLR 0 1371 1121 995 175 148 66 chr11 117582750 117583082 -31200390 + MLT1A1 LTR MaLR 1 359 -6 2093 226 55 31 chr11 117583084 117583663 -31199809 - MLT1C-int LTR MaLR -245 1126 534 776 188 9 15 chr11 117583950 117584132 -31199340 + MER51A LTR ERV1 453 640 0 228 170 0 0 chr11 117584133 117584180 -31199292 - MLT1C-int LTR MaLR -835 536 490 1219 168 0 40 chr11 117584187 117584413 -31199059 - AluJo SINE Alu -95 217 1 1756 191 68 7 chr11 117584421 117584830 -31198642 + MLT1C LTR MaLR 34 467 0 610 160 39 45 chr11 117584830 117584986 -31198486 + MLT1C-int LTR MaLR 1 155 -1216 523 245 53 101 chr11 117585097 117585254 -31198218 - L2 LINE L2 -1412 1902 1739 2123 78 0 0 chr11 117585254 117585511 -31197961 + AluSx SINE Alu 1 257 -55 523 245 53 101 chr11 117585511 117585729 -31197743 - L2 LINE L2 -1575 1739 1545 4056 70 5 29 chr11 117585836 117586322 -31197150 - L1PB1 LINE L1 -2 6149 5678 2331 93 0 0 chr11 117586322 117586612 -31196860 - AluSg SINE Alu -20 290 1 4056 70 5 29 chr11 117586612 117586708 -31196764 - L1PB1 LINE L1 -473 5678 5581 488 171 0 0 chr11 117586781 117586863 -31196609 + 7SLRNA srpRNA srpRNA 1 82 -238 25 65 0 0 chr11 117586863 117586909 -31196563 + AT_rich Low_complexity Low_complexity 1 46 0 32 43 0 0 chr11 117587309 117587355 -31196117 + AT_rich Low_complexity Low_complexity 1 46 0 2044 104 25 0 chr11 117587357 117587636 -31195836 - AluSg SINE Alu -24 286 1 2021 110 3 11 chr11 117587715 117587997 -31195475 - AluSq SINE Alu -33 280 1 2091 131 7 0 chr11 117588300 117588597 -31194875 - AluSx SINE Alu -13 299 1 32 67 0 0 chr11 117588789 117588849 -31194623 + AT_rich Low_complexity Low_complexity 1 60 0 2547 74 0 0 chr11 117589518 117589827 -31193645 + AluY SINE Alu 1 309 -2 2160 132 0 7 chr11 117589848 117590152 -31193320 + AluSx SINE Alu 1 302 -10 996 199 6 0 chr11 117590279 117590460 -31193012 + FRAM SINE Alu 1 176 0 2407 73 17 3 chr11 117591308 117591609 -31191863 + AluSc SINE Alu 1 305 -4 2494 75 0 0 chr11 117591609 117591914 -31191558 + AluY SINE Alu 1 305 -6 550 113 123 47 chr11 117592382 117592488 -31190984 + FLAM_C SINE Alu 17 130 -13 1655 117 140 12 chr11 117592524 117592781 -31190691 + AluSg SINE Alu 3 292 -18 221 196 235 0 chr11 117593173 117593224 -31190248 - L2 LINE L2 -24 3248 3186 237 237 221 3 chr11 117593236 117593430 -31190042 - L1MC/D LINE L1 -470 5651 5441 226 316 110 29 chr11 117593960 117594096 -31189376 - L2 LINE L2 -50 3222 3076 214 373 47 7 chr11 117594356 117594506 -31188966 - L2 LINE L2 -585 2729 2574 1887 147 7 17 chr11 117594605 117594898 -31188574 + AluJb SINE Alu 1 290 -22 2167 96 3 7 chr11 117594942 117595235 -31188237 - AluY SINE Alu -19 292 1 553 93 27 0 chr11 117595272 117595347 -31188125 - AluSg/x SINE Alu -26 283 207 2186 118 10 0 chr11 117595350 117595647 -31187825 - AluSx SINE Alu -12 300 1 2170 103 3 7 chr11 117596259 117596550 -31186922 + AluSq SINE Alu 1 290 -23 2002 108 29 4 chr11 117596622 117596901 -31186571 - AluSc SINE Alu -23 286 1 1677 171 17 10 chr11 117597894 117598186 -31185286 + AluJo SINE Alu 1 294 -18 803 188 94 0 chr11 117598186 117598346 -31185126 + AluJb SINE Alu 134 308 -4 302 176 94 35 chr11 117598906 117598991 -31184481 - L1MB7 LINE L1 -2 6182 6093 2036 144 0 0 chr11 117599505 117599796 -31183676 + AluJo SINE Alu 1 291 -21 1177 186 45 0 chr11 117599981 117600201 -31183271 + AluJo SINE Alu 1 230 -82 205 309 18 0 chr11 117600384 117600439 -31183033 + MIR SINE MIR 64 119 -143 684 216 127 0 chr11 117600548 117600729 -31182743 - MER20 DNA MER1_type 0 219 16 900 196 62 0 chr11 117602332 117602511 -31180961 + AluJb SINE Alu 121 310 -2 2176 102 7 7 chr11 117602713 117603007 -31180465 + AluSx SINE Alu 1 294 -18 533 155 217 19 chr11 117603568 117603729 -31179743 - L1PB3 LINE L1 -4 6150 5958 2288 95 0 0 chr11 117603750 117604035 -31179437 + AluSc SINE Alu 1 285 -24 815 219 88 15 chr11 117605378 117605583 -31177889 - MIR SINE MIR -38 224 5 940 167 0 42 chr11 117605818 117605986 -31177486 - FRAM SINE Alu -16 160 1 1896 138 41 3 chr11 117606111 117606401 -31177071 - AluSx SINE Alu -11 301 1 2351 146 84 45 chr11 117606775 117607176 -31176296 + LTR49 LTR ERV1 1 432 -163 2023 139 7 3 chr11 117607176 117607478 -31175994 + AluSx SINE Alu 1 303 -9 2351 146 84 45 chr11 117607478 117607632 -31175840 + LTR49 LTR ERV1 432 578 -17 309 194 97 32 chr11 117607616 117607709 -31175763 + FRAM SINE Alu 66 164 -2 * 620 157 0 0 chr11 117607996 117608098 -31175374 + LTR26E LTR ERV1 1 102 -520 * 751 188 28 0 chr11 117608095 117608239 -31175233 + LTR26B LTR ERV1 384 531 0 2308 105 3 3 chr11 117608300 117608613 -31174859 + AluSp SINE Alu 1 313 0 1911 141 27 14 chr11 117608863 117609160 -31174312 - AluJb SINE Alu -11 301 1 371 230 79 53 chr11 117609752 117609904 -31173568 - MIR SINE MIR -1 261 106 965 192 12 12 chr11 117609968 117610140 -31173332 + FAM SINE Alu 4 175 0 343 247 127 53 chr11 117610287 117610437 -31173035 + L1ME3A LINE L1 4007 4167 -1979 2064 127 7 0 chr11 117610565 117610857 -31172615 + AluSx SINE Alu 6 299 -13 441 239 82 33 chr11 117610865 117611049 -31172423 + L1ME3A LINE L1 4753 4945 -1201 615 249 126 30 chr11 117611138 117611696 -31171776 + L1ME3A LINE L1 5234 5843 -327 22 0 0 0 chr11 117611902 117611924 -31171548 + AT_rich Low_complexity Low_complexity 1 22 0 496 229 64 33 chr11 117612310 117612597 -31170875 - MER46C DNA MER2_type 0 338 8 337 279 66 30 chr11 117612899 117613096 -31170376 + L1ME LINE L1 5533 5736 -385 1376 183 9 105 chr11 117613126 117613470 -31170002 + AluSx SINE Alu 1 311 -1 390 285 126 7 chr11 117616340 117616491 -31166981 - MIR SINE MIR -48 214 46 1781 158 0 42 chr11 117616678 117616820 -31166652 + AluJb SINE Alu 1 147 -165 2122 133 10 0 chr11 117616820 117617121 -31166351 + AluSg SINE Alu 1 304 -6 1781 158 0 42 chr11 117617121 117617288 -31166184 + AluJb SINE Alu 147 297 -15 189 326 0 0 chr11 117617639 117617688 -31165784 + MIR SINE MIR 46 94 -168 180 0 0 0 chr11 117618966 117618986 -31164486 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2089 115 3 3 chr11 117619391 117619678 -31163794 - AluSx SINE Alu -23 289 3 2146 112 0 3 chr11 117620009 117620330 -31163142 - AluSx SINE Alu 0 320 1 237 376 67 7 chr11 117620336 117620485 -31162987 - L2 LINE L2 -571 2743 2586 183 294 21 91 chr11 117620704 117620847 -31162625 - L2 LINE L2 -1362 1952 1820 183 356 123 24 chr11 117620931 117621223 -31162249 - L2 LINE L2 -1739 1575 1255 2137 102 10 7 chr11 117621679 117621982 -31161490 + AluSx SINE Alu 1 304 -8 301 279 29 10 chr11 117622133 117622237 -31161235 - L1M4 LINE L1 -949 5197 5092 657 175 58 0 chr11 117622238 117622358 -31161114 - FLAM_A SINE Alu -5 128 2 249 139 0 0 chr11 117622380 117622423 -31161049 + (TA)n Simple_repeat Simple_repeat 1 43 0 1054 175 0 0 chr11 117622423 117622583 -31160889 - AluJb SINE Alu -20 292 133 2469 68 0 0 chr11 117622584 117622880 -31160592 - AluY SINE Alu -15 296 1 32 67 0 0 chr11 117623549 117623609 -31159863 + AT_rich Low_complexity Low_complexity 1 60 0 2077 138 7 0 chr11 117623801 117624098 -31159374 + AluSx SINE Alu 1 299 -13 2023 110 3 11 chr11 117624400 117624682 -31158790 + AluSq SINE Alu 1 280 -33 2050 104 25 0 chr11 117624761 117625040 -31158432 + AluSg SINE Alu 1 286 -24 32 43 0 0 chr11 117625042 117625088 -31158384 + AT_rich Low_complexity Low_complexity 1 46 0 25 65 0 0 chr11 117625488 117625534 -31157938 + AT_rich Low_complexity Low_complexity 1 46 0 515 171 0 0 chr11 117625534 117625616 -31157856 - 7SLRNA srpRNA srpRNA -238 82 1 4165 72 12 31 chr11 117625685 117625781 -31157691 + L1PB1 LINE L1 5579 5675 -476 2332 93 0 0 chr11 117625781 117626071 -31157401 + AluSg SINE Alu 1 290 -20 4165 72 12 31 chr11 117626071 117626556 -31156916 + L1PB1 LINE L1 5675 6149 -2 585 269 69 82 chr11 117626662 117626880 -31156592 + L2 LINE L2 1545 1764 -1550 2135 78 0 0 chr11 117626880 117627137 -31156335 - AluSx SINE Alu -55 257 1 585 269 69 82 chr11 117627137 117627383 -31156089 + L2 LINE L2 1764 2003 -1311 2176 102 7 7 chr11 117627697 117627991 -31155481 + AluSx SINE Alu 1 294 -18 606 155 217 19 chr11 117628551 117628712 -31154760 - L1PB3 LINE L1 -4 6150 5958 2292 95 0 0 chr11 117628733 117629018 -31154454 + AluSc SINE Alu 1 285 -24 804 219 88 15 chr11 117630361 117630566 -31152906 - MIR SINE MIR -38 224 5 926 167 0 42 chr11 117630801 117630969 -31152503 - FRAM SINE Alu -16 160 1 1875 138 42 3 chr11 117631095 117631384 -31152088 - AluSx SINE Alu -12 300 1 2583 144 84 47 chr11 117631758 117632160 -31151312 + LTR49 LTR ERV1 1 431 -164 2005 139 7 3 chr11 117632160 117632461 -31151011 + AluSx SINE Alu 1 302 -10 2583 144 84 47 chr11 117632461 117632615 -31150857 + LTR49 LTR ERV1 431 578 -17 347 194 97 32 chr11 117632599 117632692 -31150780 + FRAM SINE Alu 66 164 -2 * 671 157 0 0 chr11 117632979 117633081 -31150391 + LTR26E LTR ERV1 1 102 -520 * 811 188 28 0 chr11 117633078 117633222 -31150250 + LTR26B LTR ERV1 384 531 0 2064 115 10 3 chr11 117633283 117633579 -31149893 + AluSx SINE Alu 1 298 -14 1427 224 98 46 chr11 117634233 117634671 -31148801 - MLT1C LTR MaLR -1 466 6 965 159 35 148 chr11 117634676 117634959 -31148513 - MLT1C-int LTR MaLR 0 1371 1121 1129 175 148 66 chr11 117634959 117635291 -31148181 + MLT1A1 LTR MaLR 1 359 -6 2320 226 55 31 chr11 117635293 117635872 -31147600 - MLT1C-int LTR MaLR -245 1126 534 842 188 9 15 chr11 117636159 117636341 -31147131 + MER51A LTR ERV1 453 640 0 249 170 0 0 chr11 117636342 117636389 -31147083 - MLT1C-int LTR MaLR -835 536 490 1210 168 0 40 chr11 117636396 117636622 -31146850 - AluJo SINE Alu -95 217 1 1933 191 68 7 chr11 117636630 117637039 -31146433 + MLT1C LTR MaLR 34 467 0 678 160 39 45 chr11 117637039 117637195 -31146277 + MLT1C-int LTR MaLR 1 155 -1216 1129 127 61 0 chr11 117637199 117637364 -31146108 + AluJo SINE Alu 108 282 -30 2251 110 0 3 chr11 117637368 117637667 -31145805 - AluSx SINE Alu -14 298 1 847 116 25 0 chr11 117638194 117638315 -31145157 + FLAM_C SINE Alu 1 124 -19 24 53 0 0 chr11 117638324 117638362 -31145110 + AT_rich Low_complexity Low_complexity 1 38 0 2300 82 14 0 chr11 117638435 117638728 -31144744 - AluY SINE Alu -14 297 1 441 242 247 16 chr11 117639040 117639234 -31144238 + MIR SINE MIR 3 241 -21 2157 135 3 0 chr11 117639258 117639561 -31143911 - AluSx SINE Alu -8 304 1 198 0 0 0 chr11 117639700 117639722 -31143750 + (TC)n Simple_repeat Simple_repeat 1 22 0 1587 97 112 19 chr11 117639991 117640259 -31143213 + AluSx SINE Alu 1 293 -19 996 188 15 149 chr11 117640282 117640611 -31142861 + AluSp SINE Alu 11 295 -18 754 191 160 0 chr11 117640612 117640800 -31142672 - MLT1G LTR MaLR -32 558 341 584 214 8 8 chr11 117640833 117640964 -31142508 + FLAM_C SINE Alu 2 132 -11 1730 175 3 3 chr11 117640975 117641272 -31142200 + AluJb SINE Alu 2 298 -14 21 0 0 0 chr11 117641820 117641841 -31141631 + GC_rich Low_complexity Low_complexity 1 21 0 2088 95 0 44 chr11 117643006 117643300 -31140172 + AluSx SINE Alu 11 291 -21 185 306 24 12 chr11 117643611 117643696 -31139776 + L2 LINE L2 1780 1865 -1449 22 0 0 0 chr11 117643732 117643754 -31139718 + AT_rich Low_complexity Low_complexity 1 22 0 577 130 250 0 chr11 117643760 117643868 -31139604 - AluJo SINE Alu -176 136 2 193 148 115 33 chr11 117643871 117643932 -31139540 + L2 LINE L2 1937 2002 -1312 532 245 167 14 chr11 117644015 117644309 -31139163 + LTR33A LTR ERVL 2 380 -143 1948 109 19 62 chr11 117644309 117644631 -31138841 - AluSq SINE Alu -5 308 1 392 339 184 14 chr11 117644635 117645006 -31138466 + L2 LINE L2 2638 3072 -241 183 280 280 20 chr11 117645111 117645211 -31138261 - L2 LINE L2 -14 3258 3133 474 315 69 9 chr11 117645443 117645675 -31137797 - L2 LINE L2 -39 3274 3029 961 216 159 0 chr11 117645678 117645905 -31137567 - L1MC4a LINE L1 -395 7413 7151 1025 178 23 0 chr11 117645907 117646081 -31137391 + AluJo SINE Alu 2 179 -133 1378 164 22 116 chr11 117647156 117647304 -31136168 + AluJo SINE Alu 1 105 -207 2108 134 0 0 chr11 117647304 117647602 -31135870 + AluSx SINE Alu 1 298 -14 1378 164 22 116 chr11 117647602 117647771 -31135701 + AluJo SINE Alu 105 288 -24 21 0 0 0 chr11 117647771 117647792 -31135680 + AT_rich Low_complexity Low_complexity 1 21 0 344 298 0 11 chr11 117647838 117647932 -31135540 - MER82 DNA MER2_type -560 93 1 23 0 0 0 chr11 117648024 117648047 -31135425 + AT_rich Low_complexity Low_complexity 1 23 0 1161 161 9 37 chr11 117649047 117649096 -31134376 + AluJb SINE Alu 89 138 -174 1962 147 24 0 chr11 117649096 117649389 -31134083 + AluSx SINE Alu 8 307 -5 1161 161 9 37 chr11 117649389 117649556 -31133916 + AluJb SINE Alu 138 299 -13 210 317 49 12 chr11 117649926 117650008 -31133464 - L2 LINE L2 -158 3114 3030 445 142 0 15 chr11 117650673 117650906 -31132566 + AluJo SINE Alu 1 286 -26 1512 188 3 21 chr11 117650989 117651276 -31132196 + AluJb SINE Alu 26 307 -5 247 289 44 0 chr11 117651326 117651416 -31132056 + MIR SINE MIR 120 213 -49 710 283 49 20 chr11 117651676 117651920 -31131552 - MIR SINE MIR 0 262 12 2062 128 6 10 chr11 117652567 117652879 -31130593 + AluSx SINE Alu 1 311 -1 1933 153 145 55 chr11 117653459 117653593 -31129879 + L1MB7 LINE L1 5645 5766 -418 1955 151 6 6 chr11 117653593 117653905 -31129567 + AluJo SINE Alu 1 312 0 1933 153 145 55 chr11 117653905 117654247 -31129225 + L1MB7 LINE L1 5766 6164 -20 2489 88 0 0 chr11 117654273 117654580 -31128892 + AluSg SINE Alu 4 310 0 531 313 206 9 chr11 117654589 117654915 -31128557 + MLT1H LTR MaLR 95 484 -65 1754 187 7 0 chr11 117655896 117656195 -31127277 - AluJb SINE Alu -7 305 5 1609 163 27 17 chr11 117657354 117657654 -31125818 - AluJo SINE Alu -9 303 1 1408 178 29 0 chr11 117657664 117657905 -31125567 - AluJo SINE Alu -44 268 21 2144 106 0 31 chr11 117658172 117658494 -31124978 + AluSx SINE Alu 1 312 0 1598 182 31 0 chr11 117658714 117659000 -31124472 - AluJo SINE Alu -17 295 1 2036 113 25 0 chr11 117659195 117659477 -31123995 - AluSp SINE Alu -14 299 11 510 236 230 6 chr11 117659478 117659652 -31123820 - MIR SINE MIR -35 227 15 378 298 48 12 chr11 117659654 117659822 -31123650 + L2 LINE L2 2646 2819 -495 1610 201 10 14 chr11 117659861 117660150 -31123322 + AluJo SINE Alu 1 288 -24 2068 149 0 0 chr11 117660172 117660474 -31122998 + AluSx SINE Alu 1 302 -10 236 270 95 0 chr11 117660579 117660653 -31122819 - L2 LINE L2 -214 3058 2978 1938 147 3 10 chr11 117660713 117661019 -31122453 + AluSx SINE Alu 1 304 -8 215 205 0 0 chr11 117661257 117661296 -31122176 - MIR SINE MIR -6 256 218 2384 98 0 3 chr11 117661343 117661650 -31121822 + AluSq SINE Alu 1 306 -7 2188 107 23 0 chr11 117661663 117661962 -31121510 + AluSq SINE Alu 5 310 -3 649 274 173 4 chr11 117661987 117662224 -31121248 - LTR16B LTR ERVL -50 414 138 1724 152 24 3 chr11 117662443 117662599 -31120873 - AluJo SINE Alu -17 295 129 2200 134 0 0 chr11 117662599 117662905 -31120567 - AluSx SINE Alu -6 306 1 1724 152 24 3 chr11 117662905 117663037 -31120435 - AluJo SINE Alu -183 129 1 1207 168 67 0 chr11 117663507 117663745 -31119727 + L1MB4 LINE L1 5894 6147 -33 2266 108 7 13 chr11 117663915 117664220 -31119252 + AluSp SINE Alu 1 303 -10 2076 118 45 0 chr11 117664541 117664829 -31118643 - AluSq SINE Alu -12 301 1 2635 229 21 2 chr11 117665311 117665844 -31117628 + MER68 LTR ERV1 20 562 0 8159 208 62 40 chr11 117665868 117666456 -31117016 + HERVL68 LTR ERVL 31 605 -2432 1951 144 7 3 chr11 117666456 117666755 -31116717 + AluSq SINE Alu 1 300 -13 8159 208 62 40 chr11 117666755 117667467 -31116005 + HERVL68 LTR ERVL 605 1300 -1737 1669 141 10 61 chr11 117667467 117667780 -31115692 - AluJo SINE Alu -15 297 1 8159 208 62 40 chr11 117667780 117668696 -31114776 + HERVL68 LTR ERVL 1300 2375 -662 2665 176 82 10 chr11 117668698 117669199 -31114273 + MER68 LTR ERV1 22 558 -4 1222 255 43 58 chr11 117669931 117670269 -31113203 + MER77 LTR ERV1 277 673 -6 417 269 55 28 chr11 117670370 117670607 -31112865 + L1 LINE L1 3600 3844 -2302 189 0 0 0 chr11 117670632 117670653 -31112819 + (GA)n Simple_repeat Simple_repeat 2 22 0 1818 167 0 3 chr11 117670707 117671001 -31112471 - AluJo SINE Alu -10 302 10 3710 73 35 6 chr11 117671054 117671535 -31111937 - L1PA12 LINE L1 0 6168 5674 1491 170 22 7 chr11 117671537 117671813 -31111659 + L1P LINE L1 4745 5024 -1122 2009 143 10 0 chr11 117671855 117672148 -31111324 - AluSx SINE Alu -14 298 3 318 356 27 14 chr11 117672263 117672409 -31111063 + MER5A DNA MER1_type 1 148 -41 228 331 17 83 chr11 117672290 117672471 -31111001 - MER5A DNA MER1_type -18 171 3 * 2302 102 3 0 chr11 117672577 117672880 -31110592 - AluSp SINE Alu -9 304 1 21 0 0 0 chr11 117673311 117673332 -31110140 + AT_rich Low_complexity Low_complexity 1 21 0 2887 278 102 46 chr11 117674112 117674390 -31109082 - L2 LINE L2 -313 3000 2739 2070 107 45 0 chr11 117674390 117674679 -31108793 - AluSg SINE Alu -8 302 1 2887 278 102 46 chr11 117674679 117675529 -31107943 - L2 LINE L2 -574 2739 1814 1541 129 115 31 chr11 117675529 117675664 -31107808 + AluJb SINE Alu 1 123 -189 2069 131 7 0 chr11 117675664 117675962 -31107510 + AluSx SINE Alu 1 300 -12 1541 129 115 31 chr11 117675962 117676112 -31107360 + AluJb SINE Alu 123 310 -2 2045 127 0 0 chr11 117676228 117676519 -31106953 - AluY SINE Alu -20 291 1 324 274 53 21 chr11 117676616 117676711 -31106761 - L2 LINE L2 -256 3057 2960 976 194 0 0 chr11 117676978 117677148 -31106324 - FAM SINE Alu -5 170 1 327 258 146 0 chr11 117677231 117677320 -31106152 - L2 LINE L2 -8 3305 3204 464 295 62 31 chr11 117677426 117677568 -31105904 + MIR SINE MIR 3 156 -106 2271 83 0 23 chr11 117677568 117677870 -31105602 + AluSg SINE Alu 1 295 -15 464 295 62 31 chr11 117677870 117677951 -31105521 + MIR SINE MIR 156 233 -29 22 0 0 0 chr11 117678157 117678179 -31105293 + AT_rich Low_complexity Low_complexity 1 22 0 2185 92 27 3 chr11 117678525 117678820 -31104652 + AluSx SINE Alu 1 302 -10 241 194 0 97 chr11 117678873 117678935 -31104537 - L2 LINE L2 0 3313 3258 294 149 0 69 chr11 117679452 117679539 -31103933 - L1MC5 LINE L1 -48 7913 7833 227 264 0 42 chr11 117679565 117679637 -31103835 + CT-rich Low_complexity Low_complexity 5 73 0 21 0 0 0 chr11 117679647 117679668 -31103804 + AT_rich Low_complexity Low_complexity 1 21 0 1527 135 98 49 chr11 117679697 117679866 -31103606 - THE1B LTR MaLR 0 364 205 198 0 0 0 chr11 117679866 117679888 -31103584 + (GA)n Simple_repeat Simple_repeat 1 22 0 1527 135 98 49 chr11 117679888 117680065 -31103407 - THE1B LTR MaLR -159 205 1 225 284 153 40 chr11 117680202 117680378 -31103094 - L1ME LINE L1 -422 5699 5504 24 53 0 0 chr11 117680458 117680496 -31102976 + AT_rich Low_complexity Low_complexity 1 38 0 226 135 54 61 chr11 117680496 117680558 -31102914 + (TATAA)n Simple_repeat Simple_repeat 4 65 -85 3450 104 31 36 chr11 117680558 117680803 -31102669 - L1MA3 LINE L1 -8 7716 7471 2333 89 3 13 chr11 117680803 117681116 -31102356 - AluSp SINE Alu -3 310 1 3450 104 31 36 chr11 117681116 117681477 -31101995 - L1MA3 LINE L1 -253 7471 7113 598 14 0 0 chr11 117681477 117681546 -31101926 + L1PA4 LINE L1 6079 6152 -3 226 135 54 61 chr11 117681546 117681630 -31101842 + (TATAA)n Simple_repeat Simple_repeat 63 150 0 1642 121 10 28 chr11 117681640 117681930 -31101542 - L1MA3 LINE L1 -589 7135 6851 * 3736 161 12 20 chr11 117681928 117682399 -31101073 - L1MA3 LINE L1 -1921 5644 5180 2146 116 7 10 chr11 117682399 117682709 -31100763 + AluSq SINE Alu 3 311 -2 3736 161 12 20 chr11 117682709 117682977 -31100495 - L1MA3 LINE L1 -2385 5180 4911 27 0 0 0 chr11 117682979 117683006 -31100466 + AT_rich Low_complexity Low_complexity 1 27 0 2339 74 7 0 chr11 117683006 117683291 -31100181 - AluY SINE Alu -21 290 4 3097 143 19 12 chr11 117683336 117683852 -31099620 - L1MA3 LINE L1 -7022 543 24 311 136 6 3 chr11 117683852 117683917 -31099555 - FLAM_A SINE Alu 0 133 81 2220 84 3 20 chr11 117684030 117684326 -31099146 + AluY SINE Alu 1 291 -20 209 289 167 22 chr11 117684676 117684766 -31098706 - L2 LINE L2 -21 3251 3149 259 346 67 29 chr11 117684869 117684973 -31098499 + L2 LINE L2 3143 3250 -22 543 304 92 18 chr11 117685009 117685226 -31098246 + MIR SINE MIR 29 261 -1 595 236 96 41 chr11 117685370 117685590 -31097882 + MER112 DNA MER1_type 29 260 0 2309 83 36 3 chr11 117685893 117686194 -31097278 - AluSp SINE Alu -2 311 1 234 0 0 0 chr11 117686290 117686316 -31097156 + (GTTTG)n Simple_repeat Simple_repeat 4 29 0 606 207 16 0 chr11 117686316 117686437 -31097035 - AluJb SINE Alu -32 280 158 23 0 0 0 chr11 117686554 117686577 -31096895 + AT_rich Low_complexity Low_complexity 1 23 0 1604 164 13 61 chr11 117686949 117687261 -31096211 + AluJo SINE Alu 1 297 -15 194 319 185 0 chr11 117687321 117687440 -31096032 + L2 LINE L2 2807 2947 -366 412 264 58 86 chr11 117687552 117687726 -31095746 + L2 LINE L2 3104 3272 0 1309 169 0 9 chr11 117689243 117689456 -31094016 - AluJb SINE Alu -21 291 81 1671 160 13 26 chr11 117689521 117689827 -31093645 - AluJb SINE Alu -10 302 1 1881 162 3 10 chr11 117689877 117690179 -31093293 + AluJb SINE Alu 10 309 -3 1437 160 78 3 chr11 117690511 117690818 -31092654 + L1MA6 LINE L1 5971 6300 0 2114 110 3 7 chr11 117690894 117691204 -31092268 + AluY SINE Alu 1 309 -2 199 235 44 59 chr11 117691749 117691817 -31091655 + L2 LINE L2 2992 3058 -214 2381 86 0 0 chr11 117692165 117692467 -31091005 - AluSq SINE Alu -9 304 3 2351 103 6 3 chr11 117692499 117692810 -31090662 + AluSp SINE Alu 1 312 -1 948 286 60 0 chr11 117692899 117693165 -31090307 - L2 LINE L2 -489 2825 2544 1375 180 75 12 chr11 117693540 117693795 -31089677 - AluJo SINE Alu -41 271 1 1325 190 158 73 chr11 117693878 117693996 -31089476 - L1MA9 LINE L1 -114 6198 6091 1912 140 10 25 chr11 117693996 117694310 -31089162 - AluJo SINE Alu -3 309 1 1325 190 158 73 chr11 117694310 117694722 -31088750 - L1MA9 LINE L1 -221 6091 5623 1820 262 116 24 chr11 117694722 117695336 -31088136 - L2 LINE L2 -768 2546 1877 1978 118 62 3 chr11 117695341 117695629 -31087843 + AluSx SINE Alu 1 305 -7 2158 117 0 13 chr11 117695639 117695937 -31087535 + AluSx SINE Alu 1 294 -18 24 67 0 0 chr11 117696089 117696134 -31087338 + AT_rich Low_complexity Low_complexity 1 45 0 28 0 0 0 chr11 117696361 117696389 -31087083 + AT_rich Low_complexity Low_complexity 1 28 0 2246 114 0 7 chr11 117697083 117697382 -31086090 - AluSx SINE Alu -15 297 1 1031 232 49 34 chr11 117697578 117697905 -31085567 - L1ME2 LINE L1 -10 6154 5823 716 222 48 43 chr11 117697904 117698134 -31085338 - L1ME2 LINE L1 -588 5576 5346 * 1358 177 35 4 chr11 117698135 117698367 -31085105 - AluJo SINE Alu -73 239 1 2175 122 0 0 chr11 117698376 117698671 -31084801 - AluSc SINE Alu -14 295 1 3023 210 79 81 chr11 117698671 117698932 -31084540 - L1ME2 LINE L1 -814 5332 5072 342 0 0 0 chr11 117698932 117698970 -31084502 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 3023 210 79 81 chr11 117698970 117698983 -31084489 - L1ME2 LINE L1 -1074 5072 5060 2222 113 0 3 chr11 117698983 117699284 -31084188 + AluSx SINE Alu 1 300 -12 3023 210 79 81 chr11 117699284 117699450 -31084022 - L1ME2 LINE L1 -1086 5060 4895 2369 72 0 0 chr11 117699450 117699740 -31083732 + AluY SINE Alu 2 291 -20 3023 210 79 81 chr11 117699740 117700248 -31083224 - L1ME2 LINE L1 -1251 4895 4387 1738 186 19 3 chr11 117700248 117700555 -31082917 - AluJb SINE Alu 0 312 1 3023 210 79 81 chr11 117700555 117700617 -31082855 - L1ME2 LINE L1 -1759 4387 4326 1655 170 62 0 chr11 117700617 117700905 -31082567 - AluJo SINE Alu -6 306 1 3023 210 79 81 chr11 117700905 117701211 -31082261 - L1ME2 LINE L1 -1820 4326 4015 413 256 75 12 chr11 117701256 117701416 -31082056 - L1MC/D LINE L1 -2021 5787 5618 1599 182 50 4 chr11 117701487 117701767 -31081705 + AluJo SINE Alu 1 293 -19 1512 78 59 9 chr11 117701860 117702079 -31081393 - MER30 DNA MER1_type 0 230 1 232 317 48 0 chr11 117702568 117702735 -31080737 + L1MCc LINE L1 1290 1464 -4959 * 2866 187 40 50 chr11 117702733 117702891 -31080581 + L1MB4 LINE L1 5430 5588 -592 794 59 0 0 chr11 117702891 117702992 -31080480 + HY3 scRNA scRNA 1 101 0 2866 187 40 50 chr11 117702992 117703561 -31079911 + L1MB4 LINE L1 5588 6150 -30 1594 163 30 52 chr11 117703589 117703958 -31079514 + L1MB8 LINE L1 5814 6174 -4 351 261 115 31 chr11 117704034 117704294 -31079178 + L1MCc LINE L1 1951 2232 -4890 575 204 0 9 chr11 117704306 117704419 -31079053 + FLAM_A SINE Alu 20 131 -11 825 262 68 17 chr11 117704540 117704834 -31078638 + Charlie2 DNA MER1_type 16 324 -2538 275 169 92 15 chr11 117704852 117704917 -31078555 + Charlie2 DNA MER1_type 1873 1942 -920 868 202 154 47 chr11 117705000 117705486 -31077986 + Charlie2 DNA MER1_type 1969 2506 -356 347 150 17 0 chr11 117705473 117705533 -31077939 + AluYb8 SINE Alu 120 180 -128 * 22 0 0 0 chr11 117705572 117705594 -31077878 + AT_rich Low_complexity Low_complexity 1 22 0 2121 118 0 10 chr11 117705658 117705962 -31077510 + AluSq SINE Alu 1 301 -12 335 256 0 16 chr11 117705991 117706116 -31077356 + Charlie2 DNA MER1_type 2575 2697 -165 718 237 41 6 chr11 117706225 117706394 -31077078 + MER96 DNA MER1_type 1 175 0 2195 129 0 0 chr11 117707736 117708031 -31075441 + AluSx SINE Alu 1 295 -17 2218 98 0 10 chr11 117708185 117708490 -31074982 + AluY SINE Alu 1 302 -9 604 196 154 38 chr11 117708815 117709019 -31074453 - Tigger6a DNA MER2_type -527 1070 833 2081 155 3 0 chr11 117709019 117709329 -31074143 - AluSx SINE Alu -1 311 1 604 196 154 38 chr11 117709329 117709364 -31074108 - Tigger6a DNA MER2_type -764 833 803 3653 165 51 48 chr11 117709364 117709387 -31074085 + L1MB7 LINE L1 5287 5308 -876 1650 179 7 0 chr11 117709387 117709667 -31073805 + AluJb SINE Alu 1 282 -30 336 24 0 0 chr11 117709670 117709711 -31073761 + (CA)n Simple_repeat Simple_repeat 1 41 0 3653 165 51 48 chr11 117709711 117709847 -31073625 + L1MB7 LINE L1 5309 5443 -741 1598 206 11 3 chr11 117709847 117710129 -31073343 + AluJo SINE Alu 13 296 -16 3653 165 51 48 chr11 117710129 117710780 -31072692 + L1MB7 LINE L1 5443 6107 -77 2341 86 3 10 chr11 117710780 117711081 -31072391 - AluSx SINE Alu 0 312 14 3653 165 51 48 chr11 117711081 117711151 -31072321 + L1MB7 LINE L1 6107 6175 -9 1793 203 107 10 chr11 117711151 117711654 -31071818 - Tigger6a DNA MER2_type -274 809 258 25 0 0 0 chr11 117711673 117711698 -31071774 + AT_rich Low_complexity Low_complexity 1 25 0 1333 165 54 31 chr11 117711698 117711958 -31071514 - AluJo SINE Alu -23 289 24 816 243 95 0 chr11 117711968 117712190 -31071282 - Tigger6a DNA MER2_type -840 243 1 21 57 0 0 chr11 117712494 117712529 -31070943 + AT_rich Low_complexity Low_complexity 1 35 0 476 337 129 8 chr11 117713001 117713366 -31070106 - MLT1J LTR MaLR -18 493 85 2371 84 3 3 chr11 117713792 117714089 -31069383 + AluSq SINE Alu 1 297 -16 1509 132 56 72 chr11 117714187 117714491 -31068981 + AluJo SINE Alu 1 299 -13 2149 122 27 0 chr11 117714543 117714839 -31068633 - AluSx SINE Alu -3 309 6 1940 152 7 0 chr11 117715004 117715294 -31068178 - AluSx SINE Alu -20 292 1 272 27 27 0 chr11 117716027 117716064 -31067408 + (TTTTTG)n Simple_repeat Simple_repeat 4 41 0 28 79 0 0 chr11 117716536 117716599 -31066873 + AT_rich Low_complexity Low_complexity 1 63 0 304 200 77 0 chr11 117716608 117716673 -31066799 + AluJ/FLAM SINE Alu 1 70 -232 27 0 0 0 chr11 117716698 117716725 -31066747 + AT_rich Low_complexity Low_complexity 1 27 0 2085 140 0 0 chr11 117716984 117717284 -31066188 - AluJo SINE Alu -12 300 1 857 222 76 18 chr11 117717560 117717835 -31065637 - L1ME2 LINE L1 -5 6159 5869 27 0 0 0 chr11 117717876 117717903 -31065569 + AT_rich Low_complexity Low_complexity 1 27 0 451 116 43 0 chr11 117717903 117717972 -31065500 - FLAM_A SINE Alu -60 72 1 2233 122 0 3 chr11 117718240 117718552 -31064920 + AluSx SINE Alu 1 311 -1 1623 173 39 7 chr11 117719352 117719636 -31063836 - AluJb SINE Alu -5 307 15 204 40 0 0 chr11 117719663 117719688 -31063784 + (TTCTC)n Simple_repeat Simple_repeat 1 25 0 1283 204 66 7 chr11 117719691 117719980 -31063492 - AluJb SINE Alu -1 311 6 691 182 76 0 chr11 117720114 117720246 -31063226 + FLAM_C SINE Alu 1 142 -1 651 172 86 16 chr11 117720286 117720414 -31063058 + AluJo SINE Alu 1 137 -175 291 324 71 62 chr11 117720482 117720542 -31062930 - L2 LINE L2 -1 3312 3254 1891 161 7 10 chr11 117720542 117720846 -31062626 + AluJb SINE Alu 1 303 -9 291 324 71 62 chr11 117720846 117720995 -31062477 - L2 LINE L2 -59 3254 3101 1952 155 10 0 chr11 117721002 117721292 -31062180 + AluJo SINE Alu 1 293 -19 269 244 0 51 chr11 117721630 117721708 -31061764 - L2 LINE L2 -333 2939 2866 375 247 0 0 chr11 117721746 117721819 -31061653 - MER2 DNA MER2_type 0 345 273 1974 137 0 29 chr11 117721819 117722132 -31061340 + AluSx SINE Alu 1 304 -8 734 191 15 0 chr11 117722250 117722386 -31061086 + MIR SINE MIR 2 139 -123 1387 153 57 8 chr11 117722411 117722629 -31060843 - MER2 DNA MER2_type -70 275 40 185 0 40 0 chr11 117722629 117722654 -31060818 + (TGGGGG)n Simple_repeat Simple_repeat 4 29 0 1387 153 57 8 chr11 117722654 117722697 -31060775 - MER2 DNA MER2_type -305 40 1 4788 129 48 148 chr11 117722897 117723205 -31060267 + Tigger3b DNA MER2_type 1 338 -2690 2237 102 118 38 chr11 117723205 117723605 -31059867 - MSTB1 LTR MaLR 0 432 1 4788 129 48 148 chr11 117723605 117723971 -31059501 + Tigger3b DNA MER2_type 338 739 -2289 907 144 0 27 chr11 117723971 117724117 -31059355 - FLAM_C SINE Alu -1 142 1 4788 129 48 148 chr11 117724117 117724664 -31058808 + Tigger3b DNA MER2_type 739 1230 -1 1538 195 42 11 chr11 117724922 117725090 -31058382 - AluJo SINE Alu -14 298 116 282 73 0 0 chr11 117725090 117725131 -31058341 + (TTTTA)n Simple_repeat Simple_repeat 2 42 0 1538 195 42 11 chr11 117725131 117725249 -31058223 - AluJo SINE Alu -196 116 3 1016 180 0 0 chr11 117725249 117725416 -31058056 - FRAM SINE Alu -11 165 1 192 125 0 0 chr11 117725424 117725456 -31058016 + (TCTA)n Simple_repeat Simple_repeat 3 34 0 535 156 135 0 chr11 117725458 117725554 -31057918 - FLAM_C SINE Alu -21 122 14 478 171 34 0 chr11 117726206 117726294 -31057178 + AluJb SINE Alu 201 291 -21 398 228 36 82 chr11 117726305 117726402 -31057070 - L1M4 LINE L1 -830 5316 5216 2026 118 23 20 chr11 117726402 117726706 -31056766 + AluSx SINE Alu 1 305 -7 398 228 36 82 chr11 117726706 117726827 -31056645 - L1M4 LINE L1 -930 5216 5108 363 286 57 50 chr11 117727564 117727704 -31055768 + MIR SINE MIR 8 148 -114 789 204 6 51 chr11 117727705 117727882 -31055590 + FRAM SINE Alu 1 170 0 304 218 90 0 chr11 117727885 117727963 -31055509 + MIR SINE MIR 148 232 -30 427 267 60 27 chr11 117728287 117728437 -31055035 + L2 LINE L2 824 978 -2336 258 259 82 7 chr11 117728448 117728583 -31054889 - L1MDa LINE L1 -4915 1300 1156 2156 272 49 17 chr11 117728595 117729416 -31054056 - L1MDa LINE L1 -5400 996 150 322 203 0 0 chr11 117729422 117729491 -31053981 - L1MDa LINE L1 -6293 103 35 1667 275 139 12 chr11 117729491 117730138 -31053334 + L2 LINE L2 975 1703 -1611 2295 98 0 0 chr11 117730144 117730440 -31053032 + AluSg SINE Alu 1 296 -14 210 37 0 0 chr11 117730605 117730632 -31052840 + (A)n Simple_repeat Simple_repeat 1 27 0 185 0 40 0 chr11 117730656 117730681 -31052791 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 1160 60 0 0 chr11 117730721 117730855 -31052617 + AluY SINE Alu 1 134 -177 2411 81 0 3 chr11 117730855 117731165 -31052307 + AluY SINE Alu 1 309 -2 2199 84 3 3 chr11 117731341 117731628 -31051844 + AluSc SINE Alu 1 287 -22 1906 125 3 31 chr11 117732599 117732920 -31050552 - AluSg SINE Alu 0 313 1 1883 156 0 13 chr11 117732922 117733223 -31050249 - AluJb SINE Alu -15 297 1 1757 161 43 0 chr11 117733408 117733687 -31049785 - AluJb SINE Alu -20 292 2 613 241 7 41 chr11 117733873 117734018 -31049454 + FLAM_C SINE Alu 3 142 -1 1153 75 6 6 chr11 117734403 117734564 -31048908 - L1PA7 LINE L1 -1 6153 5993 33 25 0 0 chr11 117736115 117736155 -31047317 + AT_rich Low_complexity Low_complexity 1 40 0 30 0 0 0 chr11 117737032 117737062 -31046410 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr11 117737255 117737283 -31046189 + AT_rich Low_complexity Low_complexity 1 28 0 33 0 0 0 chr11 117737426 117737459 -31046013 + AT_rich Low_complexity Low_complexity 1 33 0 2324 79 7 3 chr11 117738706 117738997 -31044475 + AluSx SINE Alu 1 292 -20 1427 284 176 19 chr11 117739125 117739334 -31044138 + L2 LINE L2 1998 2173 -1141 2354 86 0 13 chr11 117739334 117739635 -31043837 + AluY SINE Alu 1 297 -14 1427 284 176 19 chr11 117739635 117739786 -31043686 + L2 LINE L2 2173 2299 -1015 2128 98 34 0 chr11 117739786 117739905 -31043567 + AluSg SINE Alu 1 114 -196 184 29 29 29 chr11 117739905 117739939 -31043533 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 2128 98 34 0 chr11 117739939 117740114 -31043358 + AluSg SINE Alu 114 305 -5 1427 284 176 19 chr11 117740114 117740597 -31042875 + L2 LINE L2 2299 2975 -339 2087 147 0 0 chr11 117740598 117740905 -31042567 + AluSx SINE Alu 1 307 -5 2222 82 4 0 chr11 117740905 117741174 -31042298 + AluSx SINE Alu 19 289 -23 477 143 13 13 chr11 117741274 117741351 -31042121 - AluJ/FLAM SINE Alu -231 81 5 2180 124 0 3 chr11 117741383 117741689 -31041783 + AluSg SINE Alu 1 305 -5 281 276 170 27 chr11 117741697 117742495 -31040977 - L1M4 LINE L1 -1070 5076 4155 1652 167 24 24 chr11 117742495 117742788 -31040684 - AluJo SINE Alu -19 293 1 281 276 170 27 chr11 117742788 117742812 -31040660 - L1M4 LINE L1 -1991 4155 4136 617 348 90 37 chr11 117743144 117743656 -31039816 + L1ME3 LINE L1 5297 5835 -327 213 289 0 0 chr11 117743728 117743780 -31039692 + L3 LINE CR1 975 1026 -551 482 327 76 46 chr11 117743950 117744419 -31039053 - L2 LINE L2 -225 3047 2575 390 316 168 0 chr11 117744533 117744688 -31038784 + MER5A DNA MER1_type 9 189 0 375 298 192 10 chr11 117744719 117744917 -31038555 + L3 LINE CR1 1249 1482 -95 245 29 29 0 chr11 117745457 117745491 -31037981 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 2239 97 27 0 chr11 117746400 117746698 -31036774 - AluSx SINE Alu -6 306 1 2145 112 0 20 chr11 117746762 117747066 -31036406 - AluSq SINE Alu -15 298 1 412 182 13 26 chr11 117749474 117749551 -31033921 - AluS SINE Alu -242 76 1 21 0 0 0 chr11 117749838 117749859 -31033613 + AT_rich Low_complexity Low_complexity 1 21 0 2085 123 0 16 chr11 117749886 117750194 -31033278 - AluSx SINE Alu -9 303 1 1928 128 43 15 chr11 117750315 117750644 -31032828 + MER44D DNA MER2_type 1 608 -1 578 191 109 48 chr11 117751151 117751298 -31032174 + FRAM SINE Alu 1 156 -20 435 207 0 24 chr11 117751842 117751924 -31031548 - MER5A DNA MER1_type -109 80 1 763 181 6 93 chr11 117752397 117752579 -31030893 - FRAM SINE Alu -15 161 1 269 341 123 15 chr11 117753993 117754195 -31029277 - MIR3 SINE MIR -38 224 3 398 313 70 0 chr11 117756480 117756608 -31026864 + MIR SINE MIR 123 259 -3 242 261 29 14 chr11 117756624 117756693 -31026779 - L2 LINE L2 -23 3249 3180 207 298 99 57 chr11 117758392 117758533 -31024939 + L2 LINE L2 2306 2452 -862 185 364 92 15 chr11 117758583 117758778 -31024694 + L2 LINE L2 2808 3017 -255 2123 116 0 55 chr11 117758787 117759115 -31024357 - AluSg SINE Alu 0 310 1 23 0 0 0 chr11 117760910 117760933 -31022539 + AT_rich Low_complexity Low_complexity 1 23 0 521 186 26 0 chr11 117761159 117761272 -31022200 - MER20 DNA MER1_type 0 219 104 1922 150 3 7 chr11 117761421 117761721 -31021751 - AluSx SINE Alu -13 299 1 1577 158 49 15 chr11 117762645 117762911 -31020561 - AluSx SINE Alu -37 275 1 2030 157 0 0 chr11 117762913 117763206 -31020266 - AluJb SINE Alu -19 293 1 1013 229 57 9 chr11 117763565 117763792 -31019680 + MER8 DNA MER2_type 1 238 -1 194 270 0 0 chr11 117763862 117763899 -31019573 + MIR SINE MIR 49 85 -177 1770 189 0 3 chr11 117764058 117764355 -31019117 + AluJo SINE Alu 1 296 -16 554 220 12 26 chr11 117764704 117764873 -31018599 - MER104 DNA Tc2 -13 167 1 242 310 0 0 chr11 117765168 117765226 -31018246 - L2 LINE L2 -8 3264 3207 254 281 0 98 chr11 117765408 117765490 -31017982 + MIR3 SINE MIR 10 83 -125 2787 13 0 0 chr11 117766477 117766786 -31016686 + AluY SINE Alu 1 309 -2 21 57 0 0 chr11 117766853 117766888 -31016584 + AT_rich Low_complexity Low_complexity 1 35 0 2197 106 0 17 chr11 117766917 117767219 -31016253 + AluSc SINE Alu 1 297 -12 1489 175 72 27 chr11 117767234 117767639 -31015833 - L1MB7 LINE L1 -16 6168 5746 1561 181 7 30 chr11 117767656 117767959 -31015513 + AluJo SINE Alu 1 296 -16 1960 220 58 2 chr11 117768015 117768552 -31014920 - L1MB7 LINE L1 -1320 4826 4260 1910 128 0 17 chr11 117768552 117768865 -31014607 - AluSq SINE Alu 0 308 1 1928 128 43 15 chr11 117768986 117769315 -31014157 + MER44D DNA MER2_type 1 608 -1 578 191 109 48 chr11 117769822 117769969 -31013503 + FRAM SINE Alu 1 156 -20 435 207 0 24 chr11 117770513 117770595 -31012877 - MER5A DNA MER1_type -109 80 1 24 32 0 0 chr11 117771076 117771107 -31012365 + AT_rich Low_complexity Low_complexity 1 31 0 1355 182 17 67 chr11 117771107 117771404 -31012068 - AluJo SINE Alu -29 283 2 1962 156 0 17 chr11 117771665 117771966 -31011506 - AluJb SINE Alu -16 296 1 1738 221 17 42 chr11 117772382 117772521 -31010951 + L1MB2 LINE L1 4519 4660 -1486 2092 118 7 23 chr11 117772521 117772826 -31010646 + AluSx SINE Alu 1 300 -12 1738 221 17 42 chr11 117772826 117773165 -31010307 + L1MB2 LINE L1 4660 4985 -1161 1505 144 128 0 chr11 117773226 117773483 -31009989 - AluSp SINE Alu -21 292 3 868 170 0 0 chr11 117773612 117773753 -31009719 + FLAM_C SINE Alu 1 141 -2 3697 168 63 18 chr11 117773762 117773992 -31009480 + L1MB2 LINE L1 5042 5260 -911 1719 182 3 3 chr11 117773992 117774278 -31009194 + AluJb SINE Alu 3 288 -24 3697 168 63 18 chr11 117774278 117775000 -31008472 + L1MB2 LINE L1 5260 6013 -158 447 206 103 0 chr11 117775011 117775118 -31008354 + MLT1B LTR MaLR 3 120 -270 2180 124 0 3 chr11 117775127 117775433 -31008039 + AluSx SINE Alu 1 305 -7 422 150 60 0 chr11 117775442 117775542 -31007930 + L1MB2 LINE L1 6064 6169 -2 298 226 48 12 chr11 117776325 117776409 -31007063 - HAL1 LINE L1 -2169 338 252 1989 124 28 0 chr11 117776445 117776735 -31006737 - AluSx SINE Alu -14 298 1 1656 184 13 33 chr11 117776928 117777232 -31006240 - AluJo SINE Alu -14 298 1 2056 135 23 0 chr11 117777465 117777769 -31005703 + AluSx SINE Alu 1 311 -1 1055 155 0 6 chr11 117777769 117777930 -31005542 + AluJb SINE Alu 134 293 -19 2295 82 3 3 chr11 117778136 117778430 -31005042 + AluY SINE Alu 1 294 -17 1908 150 3 7 chr11 117778477 117778777 -31004695 - AluSx SINE Alu -13 299 1 1564 158 49 15 chr11 117779701 117779967 -31003505 - AluSx SINE Alu -37 275 1 2011 157 0 0 chr11 117779969 117780262 -31003210 - AluJb SINE Alu -19 293 1 1107 229 57 9 chr11 117780621 117780848 -31002624 + MER8 DNA MER2_type 1 238 -1 192 270 0 0 chr11 117780918 117780955 -31002517 + MIR SINE MIR 49 85 -177 1744 189 0 3 chr11 117781114 117781411 -31002061 + AluJo SINE Alu 1 296 -16 623 218 17 26 chr11 117781760 117781929 -31001543 - MER104 DNA Tc2 -13 167 1 239 310 0 0 chr11 117782224 117782282 -31001190 - L2 LINE L2 -8 3264 3207 246 296 0 0 chr11 117782492 117782546 -31000926 + MIR SINE MIR 30 83 -125 2837 13 0 0 chr11 117783534 117783844 -30999628 + AluY SINE Alu 1 310 -1 21 57 0 0 chr11 117783911 117783946 -30999526 + AT_rich Low_complexity Low_complexity 1 35 0 2404 87 0 13 chr11 117783975 117784286 -30999186 + AluSc SINE Alu 1 307 -2 1532 192 25 14 chr11 117784735 117785021 -30998451 + AluJo SINE Alu 1 289 -23 206 380 10 0 chr11 117785769 117785869 -30997603 + MIR SINE MIR 30 130 -78 230 228 41 117 chr11 117786545 117786618 -30996854 + MIR SINE MIR 118 176 -86 2404 89 0 3 chr11 117786618 117786922 -30996550 + AluSg SINE Alu 1 303 -7 230 228 41 117 chr11 117786922 117786993 -30996479 + MIR SINE MIR 176 251 -11 205 123 15 77 chr11 117787374 117787388 -30996084 + A-rich Low_complexity Low_complexity 4 17 -47 2305 101 3 0 chr11 117787388 117787694 -30995778 + AluSp SINE Alu 1 307 -6 205 123 15 77 chr11 117787694 117787744 -30995728 + A-rich Low_complexity Low_complexity 17 64 0 731 189 209 16 chr11 117788176 117788425 -30995047 - L1MC4 LINE L1 -1283 6759 6463 480 219 68 34 chr11 117788446 117788592 -30994880 - L1MD2 LINE L1 -484 5875 5725 910 167 12 6 chr11 117788596 117788758 -30994714 - FRAM SINE Alu -13 163 1 2248 118 0 0 chr11 117788770 117789066 -30994406 - AluSg SINE Alu -14 296 1 2840 235 93 29 chr11 117789066 117789580 -30993892 - L1MD2 LINE L1 -743 5403 4923 1623 189 14 10 chr11 117789580 117789871 -30993601 - AluJo SINE Alu -20 292 1 2840 235 93 29 chr11 117789871 117790695 -30992777 - L1MD2 LINE L1 -1223 4923 4309 576 218 30 8 chr11 117791927 117792060 -30991412 + L1M4 LINE L1 721 856 -5686 1362 199 104 0 chr11 117792074 117792420 -30991052 + L1M4 LINE L1 907 1288 -5254 968 209 113 150 chr11 117792431 117793253 -30990219 + MER52A LTR ERV1 665 1456 -299 255 253 93 60 chr11 117793275 117793425 -30990047 + MER52A LTR ERV1 1601 1755 0 4339 163 63 16 chr11 117793425 117794222 -30989250 + MER52A-int LTR ERV1 1 834 -6257 * 28613 104 17 4 chr11 117794206 117798091 -30985381 + MER52-int LTR ERV1 3156 7091 0 933 248 79 52 chr11 117798092 117798674 -30984798 + MER52A LTR ERV1 282 716 -304 331 211 19 77 chr11 117798649 117798753 -30984719 + MER52A LTR ERV1 1209 1306 -449 * 1691 195 67 94 chr11 117798754 117799208 -30984264 + L1M4 LINE L1 1434 1917 -4727 1509 197 0 26 chr11 117799208 117799513 -30983959 - AluJo SINE Alu -15 297 1 1691 195 67 94 chr11 117799513 117799698 -30983774 + L1M4 LINE L1 1917 2105 -4539 1933 167 0 6 chr11 117799705 117800016 -30983456 + AluSx SINE Alu 1 309 -3 232 0 0 0 chr11 117800132 117800158 -30983314 + L1M4c LINE L1 2440 2465 -3919 6770 155 120 102 chr11 117800158 117801855 -30981617 - MER52A LTR ERV1 0 1755 30 411 214 104 58 chr11 117801870 117801964 -30981508 + L1M4c LINE L1 2490 2578 -3804 1388 112 81 22 chr11 117801964 117802187 -30981285 - MER46A DNA MER2_type 0 236 1 411 214 104 58 chr11 117802187 117802265 -30981207 + L1M4c LINE L1 2578 2670 -3712 1390 197 11 4 chr11 117802286 117802560 -30980912 + AluJo SINE Alu 35 310 -2 1278 217 42 0 chr11 117802560 117802873 -30980599 + L1M4c LINE L1 2671 2996 -3386 337 229 0 0 chr11 117802867 117802937 -30980535 + L1M4c LINE L1 3200 3269 -3113 * 1940 134 3 3 chr11 117802943 117803269 -30980203 + AluSx SINE Alu 2 327 0 466 240 164 14 chr11 117803269 117803415 -30980057 + AluSx SINE Alu 2 169 -133 674 170 0 0 chr11 117803416 117803522 -30979950 + AluJo/FRAM SINE Alu 203 308 -4 2481 85 0 0 chr11 117803552 117803859 -30979613 + AluY SINE Alu 1 307 -4 2108 222 102 53 chr11 117803875 117804191 -30979281 + L1M4c LINE L1 3301 3600 -2782 2216 168 79 8 chr11 117804191 117804585 -30978887 + MSTB LTR MaLR 3 424 -2 2108 222 102 53 chr11 117804585 117804884 -30978588 + L1M4c LINE L1 3600 3883 -2499 2114 124 10 0 chr11 117804884 117805183 -30978289 + AluSc SINE Alu 1 302 -7 2108 222 102 53 chr11 117805183 117805209 -30978263 + L1M4c LINE L1 3883 3906 -2476 2028 144 0 3 chr11 117805209 117805508 -30977964 + AluJb SINE Alu 5 302 -10 2108 222 102 53 chr11 117805508 117805694 -30977778 + L1M4c LINE L1 3906 4171 -2211 1217 209 0 4 chr11 117805694 117805919 -30977553 + AluJb SINE Alu 84 307 -5 3141 208 50 56 chr11 117805942 117806187 -30977285 + L1M4c LINE L1 4162 4407 -1975 2348 97 0 0 chr11 117806187 117806487 -30976985 + AluSx SINE Alu 1 300 -12 3141 208 50 56 chr11 117806487 117806574 -30976898 + L1M4c LINE L1 4407 4493 -1889 180 0 0 0 chr11 117806574 117806594 -30976878 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3141 208 50 56 chr11 117806594 117806607 -30976865 + L1M4c LINE L1 4493 4505 -1877 2220 113 3 7 chr11 117806607 117806916 -30976556 + AluSx SINE Alu 1 308 -4 3141 208 50 56 chr11 117806916 117806936 -30976536 + L1M4c LINE L1 4505 4524 -1858 2081 110 7 0 chr11 117806936 117807242 -30976230 + AluSp SINE Alu 1 308 0 3141 208 50 56 chr11 117807242 117807779 -30975693 + L1M4c LINE L1 4524 5062 -1320 1544 181 7 30 chr11 117807835 117808138 -30975334 - AluJo SINE Alu -16 296 1 1681 177 71 27 chr11 117808153 117808560 -30974912 + L1MB7 LINE L1 5744 6168 -16 2381 96 0 0 chr11 117808575 117808876 -30974596 - AluSq SINE Alu -12 301 1 268 363 123 6 chr11 117808885 117809122 -30974350 + L2 LINE L2 2779 3037 -235 1823 64 30 0 chr11 117809247 117809483 -30973989 + L1PA13 LINE L1 5921 6163 0 564 203 56 116 chr11 117810275 117810526 -30972946 + MER106A DNA MER1_type 1 236 0 3591 156 29 15 chr11 117810904 117811499 -30971973 + MER6A DNA MER2_type 2 604 -1 2158 130 3 0 chr11 117811659 117811967 -30971505 + AluSq SINE Alu 1 309 -4 449 255 103 30 chr11 117812987 117813203 -30970269 + LTR33A LTR ERVL 14 216 -305 488 276 68 5 chr11 117813266 117813458 -30970014 + LTR33A LTR ERVL 320 523 0 556 168 10 0 chr11 117813578 117813679 -30969793 + L1MB3 LINE L1 6030 6131 -52 234 0 0 0 chr11 117813681 117813707 -30969765 + (CAA)n Simple_repeat Simple_repeat 2 27 0 229 292 46 0 chr11 117814426 117814491 -30968981 + L2 LINE L2 3234 3301 -12 1200 140 0 94 chr11 117815053 117815288 -30968184 + MER20 DNA MER1_type 7 219 0 216 304 0 0 chr11 117817479 117817535 -30965937 + MIR SINE MIR 8 63 -199 651 285 86 18 chr11 117818012 117818233 -30965239 - MIR SINE MIR -15 247 12 446 375 43 20 chr11 117818498 117818847 -30964625 + L2 LINE L2 2886 3242 -71 358 272 169 42 chr11 117819327 117819411 -30964061 + L3 LINE CR1 1331 1403 -174 200 35 35 0 chr11 117819411 117819440 -30964032 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1927 123 0 14 chr11 117819444 117819721 -30963751 - AluSg SINE Alu -37 273 1 358 272 169 42 chr11 117819721 117819844 -30963628 + L3 LINE CR1 1405 1570 -7 1208 181 9 0 chr11 117820083 117820299 -30963173 - L1PA16 LINE L1 0 6166 5949 1310 92 0 0 chr11 117820655 117820819 -30962653 - AluSc SINE Alu -14 295 132 190 329 43 0 chr11 117820854 117820924 -30962548 + L2 LINE L2 2957 3029 -243 2140 88 7 0 chr11 117820982 117821254 -30962218 - AluSg SINE Alu -34 276 3 228 163 0 0 chr11 117821486 117821529 -30961943 + (TA)n Simple_repeat Simple_repeat 1 43 0 848 51 0 0 chr11 117823451 117823549 -30959923 - HY3 scRNA scRNA -3 98 1 1302 218 3 21 chr11 117823642 117823927 -30959545 - AluJo SINE Alu -30 282 3 340 275 123 136 chr11 117824026 117824078 -30959394 - L3 LINE CR1 -150 1427 1376 2135 117 14 0 chr11 117824078 117824368 -30959104 + AluSx SINE Alu 1 294 -18 340 275 123 136 chr11 117824368 117824652 -30958820 - L3 LINE CR1 -201 1376 1100 1991 143 0 14 chr11 117824652 117824946 -30958526 - AluSx SINE Alu -22 290 1 340 275 123 136 chr11 117824946 117825218 -30958254 - L3 LINE CR1 -477 1100 826 2459 92 0 0 chr11 117825363 117825668 -30957804 + AluSq SINE Alu 6 310 -3 207 0 0 0 chr11 117826283 117826306 -30957166 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2021 148 0 3 chr11 117826473 117826778 -30956694 - AluSx SINE Alu -4 308 5 2183 117 3 0 chr11 117826799 117827099 -30956373 - AluSq SINE Alu -8 305 5 1868 171 3 7 chr11 117827227 117827532 -30955940 + AluJb SINE Alu 1 304 -8 1363 179 0 8 chr11 117827570 117827804 -30955668 + AluJo SINE Alu 65 296 -16 21 0 0 0 chr11 117827893 117827914 -30955558 + AT_rich Low_complexity Low_complexity 1 21 0 23 78 0 0 chr11 117828353 117828404 -30955068 + AT_rich Low_complexity Low_complexity 1 51 0 1740 185 0 13 chr11 117828495 117828793 -30954679 + AluJb SINE Alu 1 294 -18 1760 138 4 0 chr11 117829003 117829256 -30954216 + AluSx SINE Alu 48 301 -11 700 239 124 20 chr11 117829287 117829488 -30953984 - MER58A DNA MER1_type -1 223 2 186 243 135 14 chr11 117829793 117829867 -30953605 + L2 LINE L2 3168 3250 -63 1789 141 48 10 chr11 117830203 117830493 -30952979 + AluJb SINE Alu 1 301 -11 245 264 141 25 chr11 117831551 117831672 -30951800 - L2 LINE L2 -1047 2267 2133 1418 191 8 147 chr11 117831673 117831843 -30951629 - L1M4 LINE L1 -1484 4662 4470 2360 90 0 28 chr11 117831843 117832164 -30951308 - AluSx SINE Alu 0 312 1 1418 191 8 147 chr11 117832164 117832270 -30951202 - L1M4 LINE L1 -1676 4470 4351 757 179 0 0 chr11 117832270 117832387 -30951085 - FLAM_C SINE Alu -15 118 2 1418 191 8 147 chr11 117832387 117832737 -30950735 - L1M4 LINE L1 -1795 4351 4122 1187 159 106 0 chr11 117832744 117832971 -30950501 - L1MB3 LINE L1 -8 6175 5925 1476 203 41 12 chr11 117832974 117833314 -30950158 + MLT1A1 LTR MaLR 4 353 -12 2104 198 19 5 chr11 117833316 117833736 -30949736 - L1MB3 LINE L1 -262 5921 5496 1512 159 84 145 chr11 117833896 117834334 -30949138 - L1MC2 LINE L1 -13 6331 5929 6029 147 51 33 chr11 117834334 117835203 -30948269 - Tigger3b DNA MER2_type -1797 1231 332 189 0 0 0 chr11 117835203 117835224 -30948248 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 6029 147 51 33 chr11 117835224 117835563 -30947909 - Tigger3b DNA MER2_type -2696 332 1 1512 159 84 145 chr11 117835563 117835647 -30947825 - L1MC2 LINE L1 -415 5929 5841 1387 189 114 7 chr11 117835670 117835950 -30947522 - AluJb SINE Alu -2 310 1 575 181 0 9 chr11 117835969 117836074 -30947398 + FLAM_A SINE Alu 37 140 -2 322 290 121 24 chr11 117836087 117836294 -30947178 + L1M4 LINE L1 3280 3506 -2640 * 905 178 47 21 chr11 117836279 117836470 -30947002 + L1M4 LINE L1 4049 4244 -1902 466 181 0 0 chr11 117836510 117836582 -30946890 + AluS SINE Alu 3 74 -239 780 238 101 82 chr11 117836582 117836868 -30946604 + LTR40b LTR ERVL 129 423 -39 1701 194 7 3 chr11 117836868 117837167 -30946305 + AluJb SINE Alu 1 300 -12 780 238 101 82 chr11 117837167 117837208 -30946264 + LTR40b LTR ERVL 423 462 0 2080 152 0 0 chr11 117837261 117837564 -30945908 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr11 117837859 117837882 -30945590 + AT_rich Low_complexity Low_complexity 1 23 0 2179 126 3 0 chr11 117839751 117840053 -30943419 - AluSx SINE Alu -9 303 1 879 312 180 34 chr11 117840204 117840797 -30942675 + L3 LINE CR1 863 1542 -35 330 175 0 88 chr11 117841313 117841393 -30942079 - AluS SINE Alu -235 73 1 1841 181 14 24 chr11 117841408 117841517 -30941955 - L1MB7 LINE L1 -19 6165 6056 2215 111 0 0 chr11 117841517 117841823 -30941649 - AluSg SINE Alu -4 306 1 1841 181 14 24 chr11 117841823 117842134 -30941338 - L1MB7 LINE L1 -128 6056 5749 25 65 0 0 chr11 117842207 117842253 -30941219 + AT_rich Low_complexity Low_complexity 1 46 0 2245 112 3 0 chr11 117842536 117842839 -30940633 + AluSp SINE Alu 1 304 -9 437 302 9 9 chr11 117843531 117843647 -30939825 - MIR3 SINE MIR -6 202 87 232 316 154 8 chr11 117843819 117843936 -30939536 - L2 LINE L2 -5 3308 3175 180 0 0 0 chr11 117844071 117844091 -30939381 + (TA)n Simple_repeat Simple_repeat 2 21 0 2007 101 0 0 chr11 117844091 117844348 -30939124 - AluSg SINE Alu -25 285 29 205 162 0 0 chr11 117845028 117845065 -30938407 + (CA)n Simple_repeat Simple_repeat 2 38 0 848 217 68 4 chr11 117845235 117845484 -30937988 - L1MA4 LINE L1 -5 6295 6031 2047 121 14 0 chr11 117848586 117848875 -30934597 - AluSx SINE Alu -19 293 1 2328 103 0 0 chr11 117849349 117849651 -30933821 - AluSx SINE Alu -10 302 1 26 30 0 0 chr11 117850092 117850125 -30933347 + AT_rich Low_complexity Low_complexity 1 33 0 5452 51 1 4 chr11 117850444 117851128 -30932344 - L1PA7 LINE L1 -3 6151 5470 922 204 0 0 chr11 117851538 117851700 -30931772 - AluJb SINE Alu -5 307 146 1301 154 35 94 chr11 117851793 117852111 -30931361 - AluJb SINE Alu -3 309 11 188 210 210 10 chr11 117852310 117852410 -30931062 - L2 LINE L2 -1 3312 3193 2285 83 10 10 chr11 117853133 117853433 -30930039 + AluY SINE Alu 1 300 -11 2220 121 0 0 chr11 117853956 117854253 -30929219 - AluSx SINE Alu -9 303 7 399 276 60 37 chr11 117854263 117854480 -30928992 - L1MB7 LINE L1 -353 5768 5547 42508 34 23 1 chr11 117854551 117860568 -30922904 + L1PA2 LINE L1 1 6150 -5 247 301 0 0 chr11 117860570 117860653 -30922819 - L1ME LINE L1 -298 5823 5741 2267 118 0 7 chr11 117860714 117861020 -30922452 - AluSx SINE Alu -8 304 1 222 115 19 39 chr11 117861408 117861460 -30922012 + T-rich Low_complexity Low_complexity 2 52 0 2285 88 3 3 chr11 117861501 117861798 -30921674 + AluY SINE Alu 1 297 -14 290 320 40 9 chr11 117861947 117862169 -30921303 - L1ME LINE L1 -256 5865 5637 761 163 44 103 chr11 117862937 117863140 -30920332 - L1MC4 LINE L1 -90 7952 7762 640 200 194 0 chr11 117863144 117863314 -30920158 - L1MC4 LINE L1 -393 7649 7447 295 234 35 106 chr11 117863357 117863498 -30919974 - L1MC4 LINE L1 -1450 6592 6462 253 345 142 26 chr11 117864325 117864551 -30918921 - MIR SINE MIR -2 260 9 204 125 0 0 chr11 117864571 117864603 -30918869 + (TG)n Simple_repeat Simple_repeat 1 32 0 2299 90 0 0 chr11 117864630 117864919 -30918553 - AluSg SINE Alu -21 289 1 1945 141 0 29 chr11 117865787 117866100 -30917372 - AluSx SINE Alu -8 304 1 460 292 140 0 chr11 117866866 117867044 -30916428 - MIR SINE MIR 0 262 60 2251 103 0 0 chr11 117867253 117867553 -30915919 - AluSq SINE Alu 0 313 14 20888 121 17 92 chr11 117867555 117871767 -30911705 - L1P LINE L1 -2248 3898 3 562 272 78 16 chr11 117871769 117871960 -30911512 + L2 LINE L2 3111 3313 0 1982 132 140 21 chr11 117872423 117872809 -30910663 - MSTB1 LTR MaLR 0 432 1 201 74 0 0 chr11 117873384 117873411 -30910061 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 657 319 148 44 chr11 117874056 117874417 -30909055 + L3 LINE CR1 686 1008 -569 848 126 119 0 chr11 117874417 117874576 -30908896 - L1MA2 LINE L1 0 6304 6127 657 319 148 44 chr11 117874576 117874809 -30908663 + L3 LINE CR1 1008 1342 -235 1080 135 25 12 chr11 117875890 117876053 -30907419 - AluJb SINE Alu -14 298 134 1726 138 28 28 chr11 117876053 117876343 -30907129 - AluJo SINE Alu -14 298 9 258 264 0 0 chr11 117876417 117876470 -30907002 - L2 LINE L2 -5 3267 3215 211 200 0 0 chr11 117876487 117876522 -30906950 - MIR SINE MIR -109 153 119 588 313 0 12 chr11 117876971 117877137 -30906335 + MIR3 SINE MIR 35 198 -10 1195 179 64 9 chr11 117877583 117877801 -30905671 + MER8 DNA MER2_type 10 239 0 220 291 0 25 chr11 117878792 117878871 -30904601 + L2 LINE L2 3086 3162 -151 2053 152 0 0 chr11 117878873 117879183 -30904289 - AluSx SINE Alu -2 310 1 2131 103 65 0 chr11 117879972 117880262 -30903210 + AluSx SINE Alu 1 309 -3 1837 110 5 4 chr11 117880262 117880687 -30902785 - MER51A LTR ERV1 -47 587 1 29 0 0 0 chr11 117881479 117881508 -30901964 + AT_rich Low_complexity Low_complexity 1 29 0 1721 172 0 16 chr11 117881992 117882295 -30901177 - AluSx SINE Alu -14 298 1 22 0 0 0 chr11 117882422 117882444 -30901028 + AT_rich Low_complexity Low_complexity 1 22 0 1481 175 33 7 chr11 117883781 117884080 -30899392 - AluJb SINE Alu 0 306 1 1068 160 4 82 chr11 117884207 117884265 -30899207 + AluJo SINE Alu 88 149 -163 1736 157 0 40 chr11 117884265 117884590 -30898882 + AluJb SINE Alu 1 312 0 1068 160 4 82 chr11 117884590 117884762 -30898710 + AluJo SINE Alu 149 300 -12 2268 100 0 3 chr11 117884873 117885184 -30898288 + AluY SINE Alu 1 310 -1 1013 288 124 60 chr11 117885219 117885260 -30898212 - L1M4 LINE L1 -5599 943 906 1139 194 49 3 chr11 117885260 117885544 -30897928 - L1MB4 LINE L1 0 6180 5884 1013 288 124 60 chr11 117885544 117886387 -30897085 - L1M4 LINE L1 -5636 906 2 23 33 0 0 chr11 117887201 117887231 -30896241 + AT_rich Low_complexity Low_complexity 1 30 0 1863 160 28 0 chr11 117887523 117887811 -30895661 + AluJb SINE Alu 1 296 -16 282 116 0 0 chr11 117887811 117887854 -30895618 + (TA)n Simple_repeat Simple_repeat 1 43 0 1906 132 3 3 chr11 117888378 117888665 -30894807 + AluSx SINE Alu 1 287 -25 192 309 138 13 chr11 117889081 117889233 -30894239 + L2 LINE L2 2568 2738 -576 1595 191 13 33 chr11 117889254 117889557 -30893915 - AluJo SINE Alu -15 297 1 2168 103 10 13 chr11 117889568 117889878 -30893594 - AluSq SINE Alu -4 309 1 2269 100 0 3 chr11 117890172 117890471 -30893001 - AluSx SINE Alu -14 298 1 796 184 77 10 chr11 117890645 117890841 -30892631 - MER3 DNA MER1_type 0 209 1 1067 146 165 1 chr11 117891310 117891569 -30891903 + MER7A DNA MER2_type 1 336 0 403 294 40 0 chr11 117892273 117892399 -30891073 - L1ME3A LINE L1 -13 6157 6027 1799 215 20 5 chr11 117892527 117892917 -30890555 + L1M4 LINE L1 4056 4451 -1695 676 179 0 0 chr11 117892918 117893030 -30890442 - MLT1F1 LTR MaLR -444 123 12 298 237 83 90 chr11 117893047 117893203 -30890269 + L1ME3 LINE L1 6006 6160 -2 2027 90 4 0 chr11 117893249 117893515 -30889957 - AluSx SINE Alu -45 267 1 377 236 258 6 chr11 117893942 117894120 -30889352 - L2 LINE L2 -1 3312 3090 834 99 0 99 chr11 117894797 117894938 -30888534 - FRAM SINE Alu -9 167 41 265 341 123 15 chr11 117896399 117896601 -30886871 - MIR3 SINE MIR -38 224 3 392 313 70 0 chr11 117898886 117899014 -30884458 + MIR SINE MIR 123 259 -3 244 257 238 0 chr11 117899030 117899135 -30884337 - L2 LINE L2 -23 3290 3161 1903 133 7 23 chr11 117899215 117899517 -30883955 + AluSx SINE Alu 1 297 -15 194 298 106 64 chr11 117900660 117900801 -30882671 + L2 LINE L2 2306 2452 -862 375 368 89 35 chr11 117900851 117901055 -30882417 + L2 LINE L2 2808 3000 -272 2136 136 7 0 chr11 117901055 117901365 -30882107 - AluSx SINE Alu 0 312 1 375 368 89 35 chr11 117901365 117901554 -30881918 + L2 LINE L2 3000 3222 -50 281 358 66 7 chr11 117902082 117902219 -30881253 + MIR3 SINE MIR 39 183 -25 201 268 0 85 chr11 117903132 117903214 -30880258 + MIR SINE MIR 97 171 -91 448 278 69 69 chr11 117903252 117903497 -30879975 - MIR SINE MIR -6 256 12 23 0 0 0 chr11 117904367 117904390 -30879082 + AT_rich Low_complexity Low_complexity 1 23 0 1585 181 4 29 chr11 117904909 117905190 -30878282 - AluJo SINE Alu -36 276 3 1918 145 0 7 chr11 117905331 117905634 -30877838 + AluJb SINE Alu 1 301 -11 228 217 96 0 chr11 117906688 117906771 -30876701 + L2 LINE L2 3106 3196 -117 726 331 158 21 chr11 117906785 117907549 -30875923 + L2 LINE L2 1214 2082 -1232 24 67 0 0 chr11 117907780 117907825 -30875647 + AT_rich Low_complexity Low_complexity 1 45 0 1590 190 35 0 chr11 117908031 117908321 -30875151 - AluJb SINE Alu -12 300 1 1273 128 83 16 chr11 117908522 117908764 -30874708 - Tigger2 DNA MER2_type 0 2718 2461 3540 139 60 75 chr11 117908816 117909572 -30873900 - Tigger2 DNA MER2_type -1961 757 14 218 294 0 0 chr11 117910308 117910376 -30873096 - MIR SINE MIR -11 251 184 2146 63 0 60 chr11 117910542 117910863 -30872609 + AluY SINE Alu 1 303 0 1432 171 38 58 chr11 117910863 117911155 -30872317 - AluJo SINE Alu -26 286 1 271 218 0 50 chr11 117911545 117911646 -30871826 - L1MC4 LINE L1 -1339 6703 6608 24 53 0 0 chr11 117911955 117911993 -30871479 + AT_rich Low_complexity Low_complexity 1 38 0 2101 120 3 3 chr11 117911994 117912302 -30871170 + AluSx SINE Alu 1 308 -4 2069 113 7 17 chr11 117912318 117912619 -30870853 + AluSx SINE Alu 1 298 -14 1896 149 0 3 chr11 117912808 117913097 -30870375 + AluJb SINE Alu 1 288 -24 881 305 154 14 chr11 117913192 117913634 -30869838 + L2 LINE L2 2810 3313 0 493 250 226 24 chr11 117914443 117914629 -30868843 - MIR SINE MIR -7 255 20 2366 137 42 21 chr11 117914629 117915054 -30868418 - Tigger2a DNA MER2_type 0 434 1 493 250 226 24 chr11 117915054 117915079 -30868393 - MIR SINE MIR -242 20 1 2167 110 3 17 chr11 117915415 117915715 -30867757 + AluSx SINE Alu 1 296 -16 183 329 38 38 chr11 117915971 117916050 -30867422 + L2 LINE L2 3179 3257 -56 2064 132 3 0 chr11 117916058 117916368 -30867104 - AluSx SINE Alu -1 311 1 376 229 10 21 chr11 117916866 117916962 -30866510 + MIR3 SINE MIR 113 207 -1 1996 139 12 9 chr11 117917273 117917618 -30865854 + L1MA4 LINE L1 5954 6299 -1 822 159 25 12 chr11 117917741 117917904 -30865568 + Charlie1 DNA MER1_type 2380 2544 -217 378 280 69 83 chr11 117917904 117918254 -30865218 - MER2 DNA MER2_type 0 345 1 * 771 171 85 38 chr11 117918254 117918463 -30865009 + Charlie1 DNA MER1_type 2543 2761 0 252 279 96 19 chr11 117919630 117919734 -30863738 + MIR SINE MIR 89 200 -62 213 94 0 0 chr11 117919774 117919806 -30863666 + (CAGA)n Simple_repeat Simple_repeat 2 33 0 200 250 0 21 chr11 117919841 117919889 -30863583 + MIR SINE MIR 210 256 -6 23 33 0 0 chr11 117920196 117920226 -30863246 + AT_rich Low_complexity Low_complexity 1 30 0 2072 108 0 7 chr11 117920728 117921037 -30862435 - AluSx SINE Alu 0 307 1 841 179 20 0 chr11 117921179 117921330 -30862142 + MIR SINE MIR 98 251 -11 2074 96 7 4 chr11 117922152 117922455 -30861017 - AluSx SINE Alu 0 304 1 1621 77 45 5 chr11 117922575 117922796 -30860676 + MER30 DNA MER1_type 1 230 0 1851 144 13 26 chr11 117923310 117923616 -30859856 - AluJb SINE Alu -6 306 5 225 373 108 0 chr11 117924376 117924478 -30858994 + L2 LINE L2 3151 3263 -9 29 60 0 0 chr11 117925493 117925543 -30857929 + AT_rich Low_complexity Low_complexity 1 50 0 2092 99 0 14 chr11 117926060 117926343 -30857129 + AluSq SINE Alu 6 284 -29 234 0 0 0 chr11 117926343 117926369 -30857103 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 399 111 12 37 chr11 117927925 117928006 -30855466 - MER116 DNA Mariner 0 80 2 1408 207 3 41 chr11 117929923 117930237 -30853235 + AluJo SINE Alu 1 302 -10 236 213 0 0 chr11 117930254 117930301 -30853171 - MER58 DNA MER1_type 0 2420 2374 1070 220 62 17 chr11 117930401 117930692 -30852780 - L1MC4a LINE L1 -1971 5837 5534 879 222 5 16 chr11 117931339 117931528 -30851944 - MER5A DNA MER1_type 0 189 3 2086 124 0 10 chr11 117931975 117932273 -30851199 + AluSx SINE Alu 1 295 -17 1905 169 3 7 chr11 117932281 117932576 -30850896 + AluJo SINE Alu 1 294 -18 561 233 60 0 chr11 117933288 117933438 -30850034 + MER105 DNA DNA 5 163 -41 348 322 56 14 chr11 117933843 117933986 -30849486 - L2 LINE L2 0 3313 3165 948 222 37 24 chr11 117934068 117934365 -30849107 - L1MC5 LINE L1 -30 7931 7631 389 301 134 34 chr11 117934368 117934607 -30848865 + L2 LINE L2 2454 2716 -598 978 184 135 35 chr11 117934617 117934899 -30848573 + MER2 DNA MER2_type 11 320 -25 835 261 120 71 chr11 117934914 117935459 -30848013 + L2 LINE L2 2723 3313 0 665 238 126 28 chr11 117935643 117935890 -30847582 + L1MC4a LINE L1 5387 5608 -513 1555 93 36 13 chr11 117935890 117936115 -30847357 - MER30 DNA MER1_type 0 230 1 665 238 126 28 chr11 117936115 117936453 -30847019 + L1MC4a LINE L1 5608 6025 -96 22 0 0 0 chr11 117936590 117936612 -30846860 + AT_rich Low_complexity Low_complexity 1 22 0 797 167 0 0 chr11 117937574 117937700 -30845772 + FLAM_A SINE Alu 1 126 -7 399 224 245 51 chr11 117937818 117938014 -30845458 - MIR SINE MIR -3 259 26 413 330 108 50 chr11 117938496 117938630 -30844842 - L2 LINE L2 -701 2613 2488 1721 174 7 17 chr11 117938630 117938928 -30844544 + AluJo SINE Alu 1 295 -17 413 330 108 50 chr11 117938928 117939172 -30844300 - L2 LINE L2 -826 2488 2213 186 321 0 0 chr11 117940348 117940401 -30843071 - MIR3 SINE MIR -5 203 151 186 277 31 46 chr11 117940574 117940639 -30842833 - MIR SINE MIR -127 81 18 218 306 24 12 chr11 117941424 117941509 -30841963 - L2 LINE L2 -186 3086 3001 377 318 158 46 chr11 117943236 117943477 -30839995 - L2 LINE L2 -1274 2040 1827 2159 104 10 0 chr11 117943477 117943766 -30839706 + AluY SINE Alu 2 293 -18 377 318 158 46 chr11 117943766 117944301 -30839171 - L2 LINE L2 -1487 1827 1177 1988 201 123 18 chr11 117944932 117945478 -30837994 + L1ME3A LINE L1 5544 6146 -24 603 243 136 48 chr11 117945482 117945874 -30837598 - MLT1F1 LTR MaLR -4 563 120 1976 216 109 8 chr11 117945992 117946580 -30836892 + L1MDa LINE L1 812 1458 -5082 2581 140 47 55 chr11 117946694 117947243 -30836229 + L1MD1 LINE L1 5686 6230 -12 2008 120 17 3 chr11 117947249 117947540 -30835932 - AluSq SINE Alu -18 295 1 26 0 0 0 chr11 117947540 117947566 -30835906 + AT_rich Low_complexity Low_complexity 1 26 0 767 195 0 0 chr11 117948028 117948151 -30835321 + FLAM_A SINE Alu 1 123 -10 486 0 0 0 chr11 117948152 117948206 -30835266 + (CA)n Simple_repeat Simple_repeat 2 55 0 195 274 113 0 chr11 117948732 117948794 -30834678 - L2 LINE L2 -4 3268 3200 230 290 174 36 chr11 117949749 117949887 -30833585 + MER5B DNA MER1_type 17 173 -5 2381 95 0 13 chr11 117950353 117950659 -30832813 + AluSq SINE Alu 1 302 -11 351 168 274 18 chr11 117950879 117950992 -30832480 - L2 LINE L2 -459 2855 2714 40866 34 21 1 chr11 117951030 117957097 -30826375 + L1PA2 LINE L1 1 6189 0 1162 179 9 27 chr11 117957560 117957783 -30825689 + MER20 DNA MER1_type 1 219 0 23 0 0 0 chr11 117958009 117958032 -30825440 + AT_rich Low_complexity Low_complexity 1 23 0 2273 87 6 53 chr11 117959831 117960153 -30823319 + AluSq SINE Alu 1 307 -6 490 265 128 28 chr11 117960255 117960685 -30822787 - L1MEd LINE L1 -4993 1126 654 1215 245 57 60 chr11 117960783 117961095 -30822377 - L1MEd LINE L1 -5645 474 162 2294 86 0 0 chr11 117961095 117961385 -30822087 - AluY SINE Alu -21 290 1 1215 245 57 60 chr11 117961385 117961542 -30821930 - L1MEd LINE L1 -5957 162 6 491 288 185 53 chr11 117961975 117962315 -30821157 + L3 LINE CR1 380 764 -813 413 117 0 0 chr11 117962344 117962404 -30821068 + Alu SINE Alu 239 298 -13 616 283 49 39 chr11 117962654 117962859 -30820613 + L3 LINE CR1 854 1060 -517 337 320 86 16 chr11 117963208 117963336 -30820136 - L2 LINE L2 0 3272 3136 266 321 36 14 chr11 117963896 117964036 -30819436 - L1P4 LINE L1 -697 5468 5326 232 229 0 48 chr11 117964051 117964134 -30819338 - L1M4 LINE L1 -893 5253 5175 711 243 69 105 chr11 117964223 117964976 -30818496 - L1M4 LINE L1 -1680 4466 3741 1560 180 87 6 chr11 117964979 117965324 -30818148 - MER99 DNA DNA -1 827 455 3286 161 38 27 chr11 117965341 117966047 -30817425 - L1MB2 LINE L1 -21 6150 5437 892 207 75 11 chr11 117966055 117966270 -30817202 - MER99 DNA DNA -410 418 218 330 26 0 0 chr11 117966270 117966309 -30817163 + (TTCA)n Simple_repeat Simple_repeat 2 40 0 2154 99 3 0 chr11 117966309 117966591 -30816881 - AluSx SINE Alu -29 283 1 892 207 75 11 chr11 117966591 117966640 -30816832 - MER99 DNA DNA -609 219 136 1448 193 181 11 chr11 117966803 117966906 -30816566 + L1M4 LINE L1 3568 3652 -2494 1753 138 24 30 chr11 117966906 117967204 -30816268 + AluSx SINE Alu 14 309 -3 1448 193 181 11 chr11 117967204 117967635 -30815837 + L1M4 LINE L1 3652 4193 -1953 41873 35 10 0 chr11 117967635 117973726 -30809746 + L1PA3 LINE L1 3 6152 -3 1362 316 87 48 chr11 117974079 117975518 -30807954 + ERVL LTR ERVL 3481 4996 -642 333 337 35 12 chr11 117975518 117975690 -30807782 + LTR16C LTR ERVL 216 391 -100 278 234 117 0 chr11 117975749 117975826 -30807646 + LTR16C LTR ERVL 404 489 -2 2589 179 96 8 chr11 117975842 117976363 -30807109 + MLT1F1 LTR MaLR 1 567 0 771 291 39 0 chr11 117977472 117977675 -30805797 + MIR SINE MIR 47 257 -5 1711 184 31 0 chr11 117977952 117978246 -30805226 - AluJo SINE Alu -9 303 1 211 268 176 7 chr11 117978252 117978394 -30805078 - L2 LINE L2 -599 2715 2550 796 250 98 0 chr11 117978418 117978622 -30804850 - MIR SINE MIR -11 251 28 1463 153 62 4 chr11 117978628 117978870 -30804602 + AluSg SINE Alu 37 292 -18 2143 111 17 3 chr11 117979975 117980273 -30803199 + AluY SINE Alu 1 302 -9 2226 83 0 10 chr11 117980320 117980609 -30802863 - AluSq SINE Alu -1 312 27 1974 145 0 0 chr11 117980715 117981005 -30802467 - AluJo SINE Alu -22 290 1 2125 78 0 51 chr11 117982851 117983171 -30800301 - AluY SINE Alu 0 305 1 2178 115 3 6 chr11 117983188 117983500 -30799972 - AluY SINE Alu 0 311 1 246 316 7 22 chr11 117984081 117984267 -30799205 + T-rich Low_complexity Low_complexity 1 183 0 3761 149 26 64 chr11 117984436 117984557 -30798915 - L1MB8 LINE L1 -2 6176 6052 2222 114 10 0 chr11 117984557 117984855 -30798617 - AluSq SINE Alu -12 301 1 3761 149 26 64 chr11 117984855 117985096 -30798376 - L1MB8 LINE L1 -126 6052 5803 818 150 0 23 chr11 117985096 117985229 -30798243 - FLAM_C SINE Alu -2 131 2 3761 149 26 64 chr11 117985229 117985250 -30798222 - L1MB8 LINE L1 -375 5803 5783 1663 153 26 4 chr11 117985250 117985518 -30797954 - AluJo SINE Alu -38 274 1 3761 149 26 64 chr11 117985518 117985930 -30797542 - L1MB8 LINE L1 -395 5783 5409 341 296 52 7 chr11 117986817 117986952 -30796520 - MIR3 SINE MIR -1 207 67 305 237 59 74 chr11 117987014 117987076 -30796396 - MIR SINE MIR -26 236 175 2295 93 3 0 chr11 117987076 117987377 -30796095 + AluSg SINE Alu 1 302 -8 305 237 59 74 chr11 117987377 117987449 -30796023 - MIR SINE MIR -87 175 104 692 158 18 9 chr11 117987462 117987576 -30795896 + FLAM_C SINE Alu 2 116 -17 26 0 0 0 chr11 117987576 117987602 -30795870 + AT_rich Low_complexity Low_complexity 1 26 0 476 288 68 42 chr11 117987891 117988025 -30795447 + MIR SINE MIR 8 150 -112 1840 177 0 7 chr11 117988025 117988324 -30795148 + AluJo SINE Alu 1 297 -15 476 288 68 42 chr11 117988324 117988380 -30795092 + MIR SINE MIR 150 203 -59 726 153 0 0 chr11 117988395 117988506 -30794966 + AluJo/FLAM SINE Alu 11 121 -191 2264 80 28 0 chr11 117988506 117988793 -30794679 - AluSg SINE Alu -15 295 1 2463 60 0 3 chr11 117988797 117989097 -30794375 - AluY SINE Alu -12 299 1 31 0 0 0 chr11 117989097 117989128 -30794344 + AT_rich Low_complexity Low_complexity 1 31 0 289 211 0 0 chr11 117989133 117989185 -30794287 + MIR SINE MIR 192 243 -19 200 281 94 16 chr11 117989191 117989255 -30794217 - L2 LINE L2 -45 3268 3200 1991 130 0 0 chr11 117989300 117989569 -30793903 - AluSx SINE Alu -43 269 1 2199 91 0 14 chr11 117989726 117990059 -30793413 + AluY SINE Alu 1 329 0 1889 157 10 0 chr11 117990221 117990526 -30792946 + AluSx SINE Alu 1 308 -4 723 335 115 34 chr11 117990958 117991676 -30791796 - L2 LINE L2 0 3272 2329 2028 292 101 22 chr11 117991811 117992869 -30790603 - ERVL LTR ERVL -1089 4675 3534 2285 107 0 0 chr11 117992969 117993267 -30790205 - AluSx SINE Alu -14 298 1 26 30 0 0 chr11 117993708 117993741 -30789731 + AT_rich Low_complexity Low_complexity 1 33 0 5439 53 1 4 chr11 117994059 117994743 -30788729 - L1PA7 LINE L1 -3 6151 5470 943 204 0 0 chr11 117995153 117995315 -30788157 - AluJb SINE Alu -5 307 146 1338 154 35 94 chr11 117995408 117995726 -30787746 - AluJb SINE Alu -3 309 11 186 210 210 10 chr11 117995926 117996026 -30787446 - L2 LINE L2 -1 3312 3193 2333 101 0 0 chr11 117996746 117997053 -30786419 + AluY SINE Alu 1 307 -4 2124 113 7 17 chr11 117997069 117997370 -30786102 + AluSx SINE Alu 1 298 -14 1942 149 0 3 chr11 117997559 117997848 -30785624 + AluJb SINE Alu 1 288 -24 888 305 154 14 chr11 117997943 117998385 -30785087 + L2 LINE L2 2810 3313 0 483 250 226 24 chr11 117999194 117999380 -30784092 - MIR SINE MIR -7 255 20 2353 137 42 21 chr11 117999380 117999805 -30783667 - Tigger2a DNA MER2_type 0 434 1 483 250 226 24 chr11 117999805 117999830 -30783642 - MIR SINE MIR -242 20 1 2223 110 3 17 chr11 118000166 118000466 -30783006 + AluSx SINE Alu 1 296 -16 183 329 38 38 chr11 118000722 118000801 -30782671 + L2 LINE L2 3179 3257 -56 2122 132 3 0 chr11 118000809 118001119 -30782353 - AluSx SINE Alu -1 311 1 376 229 10 21 chr11 118001617 118001713 -30781759 + MIR3 SINE MIR 113 207 -1 1967 132 12 9 chr11 118002029 118002369 -30781103 + L1MA4 LINE L1 5959 6299 -1 754 153 25 13 chr11 118002498 118002655 -30780817 + Charlie1 DNA MER1_type 2386 2544 -217 331 185 27 4 chr11 118002655 118002803 -30780669 - MER2 DNA MER2_type 0 345 141 288 288 126 9 chr11 118002894 118003005 -30780467 - MER2 DNA MER2_type -221 124 1 697 168 86 38 chr11 118003005 118003214 -30780258 + Charlie1 DNA MER1_type 2543 2761 0 239 203 17 34 chr11 118004381 118004440 -30779032 + MIR SINE MIR 89 146 -116 213 94 0 0 chr11 118004525 118004557 -30778915 + (CAGA)n Simple_repeat Simple_repeat 2 33 0 199 250 0 21 chr11 118004592 118004640 -30778832 + MIR SINE MIR 210 256 -6 23 33 0 0 chr11 118004950 118004980 -30778492 + AT_rich Low_complexity Low_complexity 1 30 0 2112 108 0 7 chr11 118005482 118005791 -30777681 - AluSx SINE Alu 0 307 1 820 179 20 0 chr11 118005933 118006084 -30777388 + MIR SINE MIR 98 251 -11 2113 96 7 4 chr11 118006906 118007209 -30776263 - AluSx SINE Alu 0 304 1 1636 77 45 5 chr11 118007329 118007550 -30775922 + MER30 DNA MER1_type 1 230 0 745 114 0 65 chr11 118008064 118008187 -30775285 - AluJb SINE Alu -6 306 192 447 329 14 14 chr11 118008319 118008465 -30775007 - L2 LINE L2 -192 3080 2935 748 111 37 176 chr11 118009089 118009305 -30774167 - AluSc SINE Alu 0 309 124 23 33 0 0 chr11 118009391 118009421 -30774051 + AT_rich Low_complexity Low_complexity 1 30 0 192 312 208 0 chr11 118009443 118009520 -30773952 - L2 LINE L2 -35 3237 3145 2075 92 0 11 chr11 118009908 118010180 -30773292 - AluSq SINE Alu -18 295 27 1960 148 0 0 chr11 118010286 118010576 -30772896 - AluJo SINE Alu -22 290 1 2102 85 0 51 chr11 118012422 118012742 -30770730 - AluY SINE Alu 0 305 1 2203 112 3 6 chr11 118012760 118013072 -30770400 - AluY SINE Alu 0 311 1 246 316 7 22 chr11 118013653 118013839 -30769633 + T-rich Low_complexity Low_complexity 1 183 0 3723 150 26 64 chr11 118014008 118014129 -30769343 - L1MB8 LINE L1 -2 6176 6052 2235 111 10 0 chr11 118014129 118014427 -30769045 - AluSq SINE Alu -12 301 1 3723 150 26 64 chr11 118014427 118014668 -30768804 - L1MB8 LINE L1 -126 6052 5803 818 150 0 23 chr11 118014668 118014801 -30768671 - FLAM_C SINE Alu -2 131 2 3723 150 26 64 chr11 118014801 118014822 -30768650 - L1MB8 LINE L1 -375 5803 5783 1663 153 26 4 chr11 118014822 118015090 -30768382 - AluJo SINE Alu -38 274 1 3723 150 26 64 chr11 118015090 118015502 -30767970 - L1MB8 LINE L1 -395 5783 5409 341 296 52 7 chr11 118016389 118016524 -30766948 - MIR3 SINE MIR -1 207 67 305 237 59 74 chr11 118016586 118016648 -30766824 - MIR SINE MIR -26 236 175 2278 94 3 0 chr11 118016648 118016947 -30766525 + AluSg SINE Alu 1 300 -10 305 237 59 74 chr11 118016947 118017019 -30766453 - MIR SINE MIR -87 175 104 671 167 18 9 chr11 118017032 118017146 -30766326 + FLAM_C SINE Alu 2 116 -17 26 0 0 0 chr11 118017146 118017172 -30766300 + AT_rich Low_complexity Low_complexity 1 26 0 471 290 67 42 chr11 118017460 118017596 -30765876 + MIR SINE MIR 6 150 -112 1828 181 0 7 chr11 118017596 118017895 -30765577 + AluJo SINE Alu 1 297 -15 471 290 67 42 chr11 118017895 118017951 -30765521 + MIR SINE MIR 150 203 -59 534 216 0 0 chr11 118017966 118018077 -30765395 + AluJo/FLAM SINE Alu 11 121 -191 2221 87 28 0 chr11 118018077 118018364 -30765108 - AluSg SINE Alu -15 295 1 2463 60 0 3 chr11 118018368 118018668 -30764804 - AluY SINE Alu -12 299 1 31 0 0 0 chr11 118018668 118018699 -30764773 + AT_rich Low_complexity Low_complexity 1 31 0 289 211 0 0 chr11 118018704 118018756 -30764716 + MIR SINE MIR 192 243 -19 200 281 94 16 chr11 118018762 118018826 -30764646 - L2 LINE L2 -45 3268 3200 1991 130 0 0 chr11 118018871 118019140 -30764332 - AluSx SINE Alu -43 269 1 1265 341 67 14 chr11 118019406 118020212 -30763260 - ERVL LTR ERVL -2428 3336 2488 2348 100 0 13 chr11 118020358 118020667 -30762805 + AluSg SINE Alu 1 305 -5 3035 94 19 25 chr11 118020831 118021311 -30762161 + LTR15 LTR ERV1 1 477 -16 387 363 17 12 chr11 118021507 118021747 -30761725 - ERVL LTR ERVL -4703 1061 821 22 0 0 0 chr11 118022086 118022108 -30761364 + AT_rich Low_complexity Low_complexity 1 22 0 2404 232 93 29 chr11 118022111 118023347 -30760125 - L1ME1 LINE L1 -4 6162 4833 375 96 0 55 chr11 118023347 118023420 -30760052 - AluYb8 SINE Alu -1 307 239 1379 224 45 23 chr11 118023420 118023773 -30759699 - ERVL LTR ERVL -1639 4125 3765 343 257 27 8 chr11 118023831 118023937 -30759535 + MLT1H1 LTR MaLR 103 236 -313 2228 68 0 68 chr11 118023940 118024262 -30759210 - AluY SINE Alu -11 300 1 587 183 32 0 chr11 118024265 118024391 -30759081 - L1ME1 LINE L1 -1308 4838 4709 2182 159 64 28 chr11 118024391 118024863 -30758609 + LTR22B LTR ERVK 1 489 -3 256 343 0 0 chr11 118025723 118025793 -30757679 + L2 LINE L2 3244 3313 0 481 151 0 0 chr11 118025849 118025935 -30757537 - AluS SINE Alu -1 308 223 254 128 0 0 chr11 118025935 118025974 -30757498 - Alu SINE Alu -269 39 1 38 0 0 0 chr11 118026198 118026236 -30757236 + AT_rich Low_complexity Low_complexity 1 38 0 34 62 0 12 chr11 118026818 118026856 -30756616 + AT_rich Low_complexity Low_complexity 1 38 -41 1782 158 7 34 chr11 118026856 118027153 -30756319 - AluJo SINE Alu -23 289 1 34 62 0 12 chr11 118027153 118027194 -30756278 + AT_rich Low_complexity Low_complexity 38 79 0 2287 87 40 0 chr11 118027196 118027495 -30755977 + AluY SINE Alu 1 311 0 516 162 0 40 chr11 118027520 118027659 -30755813 - L1PA10 LINE L1 0 6168 6068 2084 103 18 4 chr11 118027926 118028274 -30755198 + AluSq SINE Alu 1 352 0 751 219 34 59 chr11 118028569 118028925 -30754547 - L1ME3 LINE L1 -27 6135 5612 1417 180 50 36 chr11 118028944 118029167 -30754305 + Tigger5 DNA MER2_type 1 219 -2104 2078 133 27 9 chr11 118029167 118029498 -30753974 + MER1B DNA MER1_type 1 337 0 1417 180 50 36 chr11 118029498 118029637 -30753835 + Tigger5 DNA MER2_type 219 2323 0 897 209 43 0 chr11 118029655 118029866 -30753606 - L1ME3 LINE L1 -577 5587 5368 265 167 0 0 chr11 118029873 118029927 -30753545 - L1ME3 LINE L1 -2894 3252 3199 1377 191 0 4 chr11 118029942 118030183 -30753289 - AluJb SINE Alu -67 245 6 1519 255 95 45 chr11 118030189 118030230 -30753242 - L1ME3 LINE L1 -2977 3169 3132 2207 122 0 6 chr11 118030230 118030542 -30752930 - AluSg SINE Alu 0 310 1 1519 255 95 45 chr11 118030542 118031309 -30752163 - L1ME3 LINE L1 -3014 3132 2301 2011 127 47 3 chr11 118031309 118031608 -30751864 - AluSx SINE Alu 0 312 1 1519 255 95 45 chr11 118031608 118031773 -30751699 - L1ME3 LINE L1 -3845 2301 2146 733 186 29 40 chr11 118031782 118032063 -30751409 + L1MEc LINE L1 2283 2563 -3863 1027 239 0 13 chr11 118032066 118032300 -30751172 + AluJb SINE Alu 82 312 0 1019 263 29 3 chr11 118032302 118032722 -30750750 + L1MEc LINE L1 2573 3035 -3391 1107 223 4 0 chr11 118032725 118032976 -30750496 - L1PB4 LINE L1 -1 6155 5904 1145 191 4 4 chr11 118032977 118033207 -30750265 - L1 LINE L1 -1913 4233 4004 7673 191 56 65 chr11 118033213 118035935 -30747537 + L1MEc LINE L1 3029 5726 -898 2015 120 30 3 chr11 118035935 118036234 -30747238 + AluSx SINE Alu 3 309 -3 7673 191 56 65 chr11 118036234 118036418 -30747054 + L1MEc LINE L1 5726 5910 -714 969 225 53 91 chr11 118036628 118036794 -30746678 + L1ME3A LINE L1 2171 2342 -3873 2081 130 3 16 chr11 118036794 118037110 -30746362 + AluSx SINE Alu 1 312 0 969 225 53 91 chr11 118037110 118037213 -30746259 + L1ME3A LINE L1 2342 2447 -3768 1865 61 4 16 chr11 118037213 118037460 -30746012 + L1PA7 LINE L1 5908 6151 -3 969 225 53 91 chr11 118037460 118037877 -30745595 + L1ME3A LINE L1 2447 2793 -3422 2858 248 81 30 chr11 118037970 118038951 -30744521 + L1ME3A LINE L1 2983 4069 -2146 1876 158 3 16 chr11 118038951 118039254 -30744218 + AluJo SINE Alu 3 301 -11 2858 248 81 30 chr11 118039254 118039784 -30743688 + L1ME3A LINE L1 4069 4571 -1644 648 302 103 29 chr11 118039786 118040203 -30743269 - LTR16A LTR ERVL -2 448 1 353 267 0 0 chr11 118040204 118040305 -30743167 + L1ME3A LINE L1 4587 4687 -1528 1012 110 0 0 chr11 118040312 118040448 -30743024 - FLAM_C SINE Alu -7 136 1 240 139 349 0 chr11 118040489 118040575 -30742897 - L1MB5 LINE L1 -17 6157 6042 2089 155 0 3 chr11 118040676 118040985 -30742487 + AluJb SINE Alu 5 312 0 441 0 0 0 chr11 118041008 118041057 -30742415 + (CA)n Simple_repeat Simple_repeat 2 50 0 1251 288 90 22 chr11 118041110 118041748 -30741724 + L1ME3A LINE L1 5550 6231 -8 754 293 65 8 chr11 118042248 118042494 -30740978 + MIR SINE MIR 3 262 0 560 245 77 117 chr11 118042976 118043346 -30740126 - MLT1H1 LTR MaLR -5 550 167 297 109 0 0 chr11 118043346 118043401 -30740071 + (TA)n Simple_repeat Simple_repeat 1 55 0 2151 92 0 11 chr11 118043401 118043718 -30739754 + AluY SINE Alu 2 315 0 560 245 77 117 chr11 118043718 118043830 -30739642 - MLT1H1 LTR MaLR -386 169 103 6105 236 65 45 chr11 118043905 118044329 -30739143 + ERVL LTR ERVL 3765 4179 -1585 2317 105 0 0 chr11 118044329 118044624 -30738848 + AluSx SINE Alu 3 297 -15 6105 236 65 45 chr11 118044624 118045917 -30737555 + ERVL LTR ERVL 4179 5528 -236 1425 142 73 156 chr11 118045917 118046468 -30737004 + MLT1D LTR MaLR 1 505 0 6105 236 65 45 chr11 118046468 118046703 -30736769 + ERVL LTR ERVL 5528 5757 -7 395 192 75 17 chr11 118046611 118046731 -30736741 + Ricksha DNA DNA 249 375 -1671 * 601 260 39 56 chr11 118046731 118047089 -30736383 + L1MEc LINE L1 1370 1721 -4675 1394 180 0 101 chr11 118047097 118047403 -30736069 + AluJo SINE Alu 18 292 -20 2458 76 3 19 chr11 118047528 118047842 -30735630 + AluSc SINE Alu 1 309 0 2376 206 12 54 chr11 118047855 118048382 -30735090 + L1M4 LINE L1 4500 4993 -1153 2017 136 3 0 chr11 118048382 118048668 -30734804 + AluSx SINE Alu 9 295 -17 2376 206 12 54 chr11 118048668 118048826 -30734646 + L1M4 LINE L1 4993 5156 -990 2264 92 0 10 chr11 118048828 118049121 -30734351 + AluSx SINE Alu 1 290 -22 1127 158 0 135 chr11 118049121 118049150 -30734322 - AluJo SINE Alu -82 230 199 1850 155 26 10 chr11 118049150 118049453 -30734019 + AluJb SINE Alu 1 308 -4 1127 158 0 135 chr11 118049453 118049689 -30733783 - AluJo SINE Alu -113 199 1 755 286 96 31 chr11 118049689 118050242 -30733230 - L1MEc LINE L1 -4752 1644 1056 546 194 0 0 chr11 118050255 118050363 -30733109 - L1MEc LINE L1 -5651 745 638 3454 164 10 32 chr11 118050507 118050569 -30732903 - L1MB3 LINE L1 -9 6174 6112 2415 67 0 35 chr11 118050569 118050883 -30732589 + AluY SINE Alu 1 303 -8 3454 164 10 32 chr11 118050883 118051501 -30731971 - L1MB3 LINE L1 -71 6112 5509 641 184 18 36 chr11 118051578 118051746 -30731726 - L1MC5 LINE L1 -31 7930 7766 331 177 13 0 chr11 118051747 118051826 -30731646 - L1MB3 LINE L1 -961 5185 5106 2022 161 0 0 chr11 118051834 118052144 -30731328 - AluJo SINE Alu -2 310 1 5483 51 7 4 chr11 118052189 118052881 -30730591 - L1PA7 LINE L1 0 6154 5461 2760 13 0 0 chr11 118052885 118053185 -30730287 + AluYa5 SINE Alu 5 304 -7 2374 199 27 89 chr11 118053327 118053886 -30729586 - L1MB3 LINE L1 -2323 3823 3231 2313 94 10 0 chr11 118053886 118054184 -30729288 - AluSp SINE Alu -12 301 1 2374 199 27 89 chr11 118054184 118054196 -30729276 - L1MB3 LINE L1 -2915 3231 3220 708 207 0 0 chr11 118054196 118054343 -30729129 - FLAM_A SINE Alu 0 149 3 2374 199 27 89 chr11 118054343 118054695 -30728777 - L1MB3 LINE L1 -2926 3220 2910 1774 153 42 3 chr11 118054695 118055028 -30728444 + L1 LINE L1 3998 4343 -1803 232 190 101 0 chr11 118055043 118055122 -30728350 + L1M4 LINE L1 4182 4268 -1878 2461 92 0 0 chr11 118055122 118055427 -30728045 + AluSg SINE Alu 1 305 -5 1739 188 0 3 chr11 118055458 118055756 -30727716 + AluJb SINE Alu 1 297 -15 981 214 77 71 chr11 118055757 118056086 -30727386 + L1M4 LINE L1 4787 5121 -1025 1893 164 23 0 chr11 118056086 118056391 -30727081 + AluJo SINE Alu 1 312 0 981 214 77 71 chr11 118056391 118056557 -30726915 + L1M4 LINE L1 5121 5285 -861 331 257 66 83 chr11 118056835 118056948 -30726524 + HAL1 LINE L1 2268 2381 -126 2138 110 0 7 chr11 118056948 118057240 -30726232 + AluSg1 SINE Alu 1 290 -19 331 257 66 83 chr11 118057240 118057367 -30726105 + HAL1 LINE L1 2381 2504 -3 215 245 0 0 chr11 118057730 118057783 -30725689 + T-rich Low_complexity Low_complexity 1 53 0 908 129 98 12 chr11 118057802 118057965 -30725507 + AluSg/x SINE Alu 127 303 -7 21 36 0 0 chr11 118058282 118058310 -30725162 + AT_rich Low_complexity Low_complexity 1 28 0 396 0 0 0 chr11 118059313 118059357 -30724115 + (CA)n Simple_repeat Simple_repeat 2 45 0 665 226 0 0 chr11 118059574 118059698 -30723774 + FLAM_A SINE Alu 1 124 -9 222 240 0 0 chr11 118060213 118060263 -30723209 + L2 LINE L2 3251 3300 -13 267 103 0 0 chr11 118060312 118060351 -30723121 + (TTG)n Simple_repeat Simple_repeat 1 39 0 2049 89 4 0 chr11 118060351 118060610 -30722862 - AluSp SINE Alu -53 260 1 270 137 0 239 chr11 118060642 118060705 -30722767 + L1MB8 LINE L1 6081 6107 -77 2161 117 7 0 chr11 118060705 118060996 -30722476 + AluSx SINE Alu 1 293 -19 270 137 0 239 chr11 118060996 118061049 -30722423 + L1MB8 LINE L1 6107 6171 -13 21 0 0 0 chr11 118061181 118061202 -30722270 + AT_rich Low_complexity Low_complexity 1 21 0 1723 148 57 34 chr11 118061208 118061506 -30721966 - AluJo SINE Alu -7 305 1 27 73 0 0 chr11 118061572 118061627 -30721845 + AT_rich Low_complexity Low_complexity 1 55 0 1733 175 0 10 chr11 118061633 118061925 -30721547 - AluJo SINE Alu -18 294 6 276 340 162 5 chr11 118061957 118062142 -30721330 - MIR SINE MIR -44 218 5 1681 175 3 23 chr11 118062423 118062726 -30720746 + AluJo SINE Alu 1 297 -15 787 270 20 28 chr11 118063104 118063352 -30720120 + MIR SINE MIR 16 261 -1 2196 133 0 0 chr11 118063510 118063811 -30719661 - AluSx SINE Alu -10 302 2 234 200 18 0 chr11 118063818 118063873 -30719599 - L1ME LINE L1 -461 5660 5605 925 101 0 0 chr11 118063878 118064007 -30719465 - AluSc SINE Alu -7 302 174 1832 102 0 0 chr11 118064007 118064243 -30719229 - AluSc SINE Alu -71 238 3 255 202 64 32 chr11 118064896 118064990 -30718482 - MER63 DNA MER1_type -457 604 508 742 256 102 74 chr11 118065010 118065288 -30718184 - L2 LINE L2 -1313 2001 1703 2329 90 10 3 chr11 118065288 118065599 -30717873 + AluSp SINE Alu 1 313 0 742 256 102 74 chr11 118065599 118065781 -30717691 - L2 LINE L2 -1611 1703 1528 2029 145 3 0 chr11 118065877 118066180 -30717292 + AluSx SINE Alu 1 304 -8 21 67 0 17 chr11 118067383 118067420 -30716052 + AT_rich Low_complexity Low_complexity 1 38 -21 1718 116 0 68 chr11 118067420 118067731 -30715741 - AluJb SINE Alu -22 290 1 21 67 0 17 chr11 118067731 118067753 -30715719 + AT_rich Low_complexity Low_complexity 38 59 0 1175 72 0 0 chr11 118068407 118068546 -30714926 + AluSq/x SINE Alu 1 139 -174 869 89 0 0 chr11 118068546 118068658 -30714814 - AluY SINE Alu -128 183 72 1050 96 0 32 chr11 118068658 118068814 -30714658 + AluSc SINE Alu 143 293 -16 505 125 62 0 chr11 118068826 118068922 -30714550 + L1MB3 LINE L1 6081 6182 -1 521 53 0 149 chr11 118069042 118069136 -30714336 - MADE1 DNA Mariner 0 80 1 228 258 16 16 chr11 118069473 118069535 -30713937 + CT-rich Low_complexity Low_complexity 5 66 0 2446 97 0 0 chr11 118070124 118070435 -30713037 - AluY SINE Alu 0 311 1 219 69 0 0 chr11 118070487 118070516 -30712956 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 3451 143 18 67 chr11 118070521 118071242 -30712230 - LTR8 LTR ERV1 0 691 6 1729 165 25 21 chr11 118071242 118071527 -30711945 - AluJo SINE Alu -26 286 1 24 32 0 0 chr11 118071705 118071736 -30711736 + AT_rich Low_complexity Low_complexity 1 31 0 2394 92 0 10 chr11 118072640 118072946 -30710526 - AluSx SINE Alu -9 303 1 1832 120 11 3 chr11 118073920 118074271 -30709201 + Tigger4(Zombi) DNA MER2_type 1 2729 -2 2023 151 0 6 chr11 118075041 118075353 -30708119 - AluJb SINE Alu 0 312 3 1045 153 108 45 chr11 118075502 118075724 -30707748 + AluJb SINE Alu 38 273 -39 2188 95 7 0 chr11 118075734 118076019 -30707453 - AluSq SINE Alu -26 287 1 235 288 17 0 chr11 118076484 118076543 -30706929 - MIR3 SINE MIR -24 184 125 1990 125 14 4 chr11 118076706 118077016 -30706456 + AluSx SINE Alu 1 313 0 2081 127 3 0 chr11 118077453 118077783 -30705689 + AluSx SINE Alu 1 331 0 23 33 0 0 chr11 118079401 118079431 -30704041 + AT_rich Low_complexity Low_complexity 1 30 0 2038 127 0 7 chr11 118079431 118079722 -30703750 - AluSx SINE Alu -23 289 1 216 305 19 104 chr11 118079767 118079921 -30703551 - MIR SINE MIR -49 213 73 223 265 59 78 chr11 118079975 118080077 -30703395 - MIR SINE MIR -56 206 107 194 265 103 0 chr11 118080316 118080384 -30703088 - MIR SINE MIR -115 93 19 2301 95 20 0 chr11 118082058 118082362 -30701110 + AluSg SINE Alu 1 310 0 374 370 7 13 chr11 118082520 118082674 -30700798 + L2 LINE L2 2538 2690 -624 215 345 100 40 chr11 118082897 118083097 -30700375 + L2 LINE L2 2940 3151 -121 2059 141 0 0 chr11 118083250 118083555 -30699917 - AluSx SINE Alu 0 305 1 1107 139 124 40 chr11 118083616 118083817 -30699655 - MER20 DNA MER1_type -1 218 1 1981 100 41 0 chr11 118084073 118084375 -30699097 + AluSg SINE Alu 1 313 0 654 165 25 50 chr11 118084936 118085057 -30698415 + FLAM_A SINE Alu 5 122 -11 2120 117 0 0 chr11 118085223 118085544 -30697928 - AluSx SINE Alu 0 321 1 3309 98 8 108 chr11 118086366 118086965 -30696507 + MER4B LTR ERV1 1 539 -71 336 279 41 16 chr11 118086980 118087102 -30696370 + L1MEc LINE L1 172 296 -6100 326 60 80 0 chr11 118087102 118087152 -30696320 + MER4E LTR ERV1 706 759 -7 2202 88 0 80 chr11 118087154 118087493 -30695979 - AluSx SINE Alu 0 312 1 1373 246 10 48 chr11 118087521 118087594 -30695878 + L1MEc LINE L1 60 134 -6262 2314 115 0 3 chr11 118087594 118087906 -30695566 - AluSx SINE Alu -1 311 1 1373 246 10 48 chr11 118087906 118088230 -30695242 + L1MEc LINE L1 134 442 -5954 1214 165 5 0 chr11 118088452 118088652 -30694820 + L1MEc LINE L1 545 745 -5651 * 1731 261 77 42 chr11 118088629 118089218 -30694254 + L1MEc LINE L1 1018 1585 -4811 1463 155 0 136 chr11 118089218 118089454 -30694018 + AluJo SINE Alu 1 267 -45 1839 155 26 10 chr11 118089454 118089757 -30693715 - AluJb SINE Alu -4 308 1 1463 155 0 136 chr11 118089757 118089786 -30693686 + AluJo SINE Alu 267 208 -104 2146 106 0 10 chr11 118089786 118090079 -30693393 - AluSx SINE Alu -22 290 1 1463 155 0 136 chr11 118090079 118090173 -30693299 + AluJo SINE Alu 207 312 0 1731 261 77 42 chr11 118090173 118090388 -30693084 + L1MEc LINE L1 1585 1850 -4546 183 264 40 112 chr11 118090879 118090923 -30692549 + L2 LINE L2 3197 3243 -70 1615 140 6 105 chr11 118090923 118091265 -30692207 - AluJo SINE Alu -4 308 1 183 264 40 112 chr11 118091265 118091345 -30692127 + L2 LINE L2 3243 3312 -1 373 263 91 108 chr11 118091405 118091655 -30691817 - L3b LINE CR1 -68 1515 1269 288 53 0 0 chr11 118091655 118091693 -30691779 + (CA)n Simple_repeat Simple_repeat 1 38 0 373 263 91 108 chr11 118091693 118091739 -30691733 - L3b LINE CR1 -314 1269 1224 25 31 0 0 chr11 118092052 118092084 -30691388 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr11 118092619 118092641 -30690831 + AT_rich Low_complexity Low_complexity 1 22 0 181 313 47 0 chr11 118092726 118092790 -30690682 + MIR3 SINE MIR 130 196 -12 2396 90 0 0 chr11 118093104 118093405 -30690067 + AluSg SINE Alu 4 304 -6 600 315 53 1 chr11 118093584 118093793 -30689679 - MIR SINE MIR -13 249 32 349 274 51 62 chr11 118094058 118094257 -30689215 + MIR SINE MIR 16 211 -51 221 230 95 27 chr11 118094399 118094473 -30688999 - L2 LINE L2 -5 3267 3189 571 269 0 0 chr11 118094476 118094610 -30688862 - Charlie4 DNA MER1_type -1827 134 1 1250 179 13 17 chr11 118094799 118095033 -30688439 - AluJb SINE Alu -63 249 17 899 153 169 37 chr11 118095237 118095426 -30688046 - AluJo SINE Alu -13 299 86 209 180 40 0 chr11 118095563 118095613 -30687859 + (TA)n Simple_repeat Simple_repeat 1 52 0 337 244 134 0 chr11 118095665 118095747 -30687725 + MER58B DNA MER1_type 2 94 -247 812 171 33 13 chr11 118095755 118095907 -30687565 + FRAM SINE Alu 4 158 -18 859 183 128 5 chr11 118095917 118096136 -30687336 + MER58B DNA MER1_type 96 341 0 395 332 157 24 chr11 118096479 118096810 -30686662 + L2 LINE L2 2897 3271 -1 24 77 0 0 chr11 118097662 118097714 -30685758 + GC_rich Low_complexity Low_complexity 1 52 0 1747 129 22 29 chr11 118098341 118098534 -30684938 - AluJo SINE Alu 0 312 120 435 38 0 0 chr11 118098534 118098587 -30684885 + (TTA)n Simple_repeat Simple_repeat 2 54 0 1747 129 22 29 chr11 118098587 118098704 -30684768 - AluJo SINE Alu -192 120 4 234 250 0 0 chr11 118100081 118100133 -30683339 - L2 LINE L2 -1 3312 3261 1217 220 84 41 chr11 118100232 118100673 -30682799 - LTR40c LTR ERVL -5 460 1 466 322 14 14 chr11 118100701 118100847 -30682625 - L2 LINE L2 -192 3080 2935 825 111 37 176 chr11 118101471 118101687 -30681785 - AluSc SINE Alu 0 309 124 23 33 0 0 chr11 118101773 118101803 -30681669 + AT_rich Low_complexity Low_complexity 1 30 0 186 312 208 0 chr11 118101825 118101902 -30681570 - L2 LINE L2 -35 3237 3145 2112 123 7 0 chr11 118102290 118102582 -30680890 - AluSx SINE Alu -18 294 1 24 67 0 0 chr11 118102708 118102753 -30680719 + AT_rich Low_complexity Low_complexity 1 45 0 230 343 45 11 chr11 118103032 118103210 -30680262 - L1ME LINE L1 -301 5820 5637 212 143 24 0 chr11 118103414 118103456 -30680016 + CT-rich Low_complexity Low_complexity 2 44 0 2069 148 13 0 chr11 118103463 118103768 -30679704 - AluSx SINE Alu -3 309 1 1122 135 6 0 chr11 118104096 118104252 -30679220 - AluSg/x SINE Alu -29 281 125 895 240 43 38 chr11 118104360 118104751 -30678721 - L1MEc LINE L1 -3910 2486 2094 13693 41 8 2 chr11 118104843 118107208 -30676264 - L1PA5 LINE L1 -2 6152 3775 12408 33 3 1 chr11 118107215 118109374 -30674098 - L1PA4 LINE L1 -3 6152 3981 2213 201 123 18 chr11 118109734 118110280 -30673192 + L1ME3A LINE L1 5544 6146 -24 689 243 136 48 chr11 118110284 118110676 -30672796 - MLT1F1 LTR MaLR -4 563 120 2245 211 110 12 chr11 118110794 118111392 -30672080 + L1MDa LINE L1 812 1468 -5072 2829 142 47 55 chr11 118111496 118112045 -30671427 + L1MD1 LINE L1 5686 6230 -12 2001 120 17 3 chr11 118112051 118112342 -30671130 - AluSq SINE Alu -18 295 1 26 0 0 0 chr11 118112342 118112368 -30671104 + AT_rich Low_complexity Low_complexity 1 26 0 793 203 0 0 chr11 118112830 118112953 -30670519 + FLAM_A SINE Alu 1 123 -10 399 21 0 0 chr11 118112954 118113002 -30670470 + (CA)n Simple_repeat Simple_repeat 2 49 0 188 274 113 0 chr11 118113528 118113590 -30669882 - L2 LINE L2 -4 3268 3200 219 290 174 36 chr11 118114545 118114683 -30668789 + MER5B DNA MER1_type 17 173 -5 2387 94 0 13 chr11 118115149 118115456 -30668016 + AluSq SINE Alu 1 303 -10 348 168 274 18 chr11 118115678 118115791 -30667681 - L2 LINE L2 -459 2855 2714 43539 34 24 1 chr11 118115829 118121844 -30661628 + L1PA3 LINE L1 1 6155 0 2202 300 87 60 chr11 118122194 118123633 -30659839 + ERVL LTR ERVL 3520 4996 -768 388 337 35 12 chr11 118123633 118123805 -30659667 + LTR16C LTR ERVL 216 391 -100 311 234 117 0 chr11 118123864 118123941 -30659531 + LTR16C LTR ERVL 404 489 -2 2642 184 127 4 chr11 118123957 118124140 -30659332 + MLT1F1 LTR MaLR 1 160 -407 189 0 0 0 chr11 118124140 118124161 -30659311 + (TC)n Simple_repeat Simple_repeat 1 21 0 2642 184 127 4 chr11 118124161 118124482 -30658990 + MLT1F1 LTR MaLR 160 567 0 763 291 39 0 chr11 118125590 118125793 -30657679 + MIR SINE MIR 47 257 -5 1700 182 30 0 chr11 118126070 118126366 -30657106 - AluJo SINE Alu -7 305 1 222 261 176 7 chr11 118126372 118126514 -30656958 - L2 LINE L2 -599 2715 2550 787 250 98 0 chr11 118126538 118126742 -30656730 - MIR SINE MIR -11 251 28 1311 164 74 4 chr11 118126748 118127013 -30656459 + AluJb SINE Alu 37 317 0 1924 123 7 0 chr11 118127307 118127576 -30655896 - AluSx SINE Alu -41 271 1 2361 88 0 0 chr11 118127605 118127899 -30655573 + AluY SINE Alu 1 294 -17 2128 114 17 3 chr11 118129004 118129302 -30654170 + AluY SINE Alu 1 302 -9 269 264 48 24 chr11 118129354 118129479 -30653993 - AluSp/q SINE Alu 0 303 176 2245 83 0 10 chr11 118129597 118129887 -30653585 - AluSq SINE Alu 0 313 27 1951 148 0 0 chr11 118129993 118130283 -30653189 - AluJo SINE Alu -22 290 1 184 80 0 0 chr11 118132129 118132154 -30651318 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 2112 85 0 51 chr11 118132154 118132449 -30651023 - AluY SINE Alu -1 304 1 2210 109 3 6 chr11 118132467 118132779 -30650693 - AluY SINE Alu 0 311 1 230 288 17 0 chr11 118133244 118133303 -30650169 - MIR3 SINE MIR -24 184 125 1983 125 14 4 chr11 118133466 118133776 -30649696 + AluSx SINE Alu 1 313 0 2075 127 3 0 chr11 118134213 118134543 -30648929 + AluSx SINE Alu 1 331 0 23 33 0 0 chr11 118136161 118136191 -30647281 + AT_rich Low_complexity Low_complexity 1 30 0 2040 127 0 7 chr11 118136191 118136482 -30646990 - AluSx SINE Alu -23 289 1 207 305 19 104 chr11 118136527 118136681 -30646791 - MIR SINE MIR -49 213 73 212 265 59 78 chr11 118136735 118136837 -30646635 - MIR SINE MIR -56 206 107 196 265 103 0 chr11 118137076 118137144 -30646328 - MIR SINE MIR -115 93 19 2301 95 20 0 chr11 118138818 118139122 -30644350 + AluSg SINE Alu 1 310 0 374 370 7 13 chr11 118139280 118139434 -30644038 + L2 LINE L2 2538 2690 -624 215 345 100 40 chr11 118139657 118139857 -30643615 + L2 LINE L2 2940 3151 -121 2059 141 0 0 chr11 118140010 118140315 -30643157 - AluSx SINE Alu 0 305 1 1107 139 124 40 chr11 118140376 118140577 -30642895 - MER20 DNA MER1_type -1 218 1 1981 100 41 0 chr11 118140833 118141135 -30642337 + AluSg SINE Alu 1 313 0 676 171 23 47 chr11 118141696 118141825 -30641647 + FLAM_A SINE Alu 5 130 -3 2120 117 0 0 chr11 118141983 118142304 -30641168 - AluSx SINE Alu 0 321 1 3309 98 8 108 chr11 118143127 118143726 -30639746 + MER4B LTR ERV1 1 539 -71 397 274 24 16 chr11 118143741 118143865 -30639607 + L1MEc LINE L1 172 296 -6100 373 58 39 0 chr11 118143865 118143917 -30639555 + MER4E LTR ERV1 719 772 -7 2202 88 0 80 chr11 118143919 118144258 -30639214 - AluSx SINE Alu 0 312 1 1373 246 10 48 chr11 118144286 118144359 -30639113 + L1MEc LINE L1 60 134 -6262 2314 115 0 3 chr11 118144359 118144671 -30638801 - AluSx SINE Alu -1 311 1 1373 246 10 48 chr11 118144671 118144995 -30638477 + L1MEc LINE L1 134 442 -5954 1214 165 5 0 chr11 118145220 118145420 -30638052 + L1MEc LINE L1 545 745 -5651 * 1731 261 77 42 chr11 118145397 118145986 -30637486 + L1MEc LINE L1 1018 1585 -4811 1463 155 0 136 chr11 118145986 118146222 -30637250 + AluJo SINE Alu 1 267 -45 1839 155 26 10 chr11 118146222 118146525 -30636947 - AluJb SINE Alu -4 308 1 1463 155 0 136 chr11 118146525 118146554 -30636918 + AluJo SINE Alu 267 208 -104 2146 106 0 10 chr11 118146554 118146847 -30636625 - AluSx SINE Alu -22 290 1 1463 155 0 136 chr11 118146847 118146941 -30636531 + AluJo SINE Alu 207 312 0 1731 261 77 42 chr11 118146941 118147156 -30636316 + L1MEc LINE L1 1585 1850 -4546 183 264 40 112 chr11 118147649 118147693 -30635779 + L2 LINE L2 3197 3243 -70 1645 137 6 105 chr11 118147693 118148036 -30635436 - AluJo SINE Alu -3 309 1 183 264 40 112 chr11 118148036 118148116 -30635356 + L2 LINE L2 3243 3312 -1 373 263 91 108 chr11 118148176 118148426 -30635046 - L3b LINE CR1 -68 1515 1269 288 53 0 0 chr11 118148426 118148464 -30635008 + (CA)n Simple_repeat Simple_repeat 1 38 0 373 263 91 108 chr11 118148464 118148510 -30634962 - L3b LINE CR1 -314 1269 1224 25 31 0 0 chr11 118148823 118148855 -30634617 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr11 118149389 118149411 -30634061 + AT_rich Low_complexity Low_complexity 1 22 0 181 313 47 0 chr11 118149496 118149560 -30633912 + MIR3 SINE MIR 130 196 -12 2409 87 0 0 chr11 118149874 118150174 -30633298 + AluSg SINE Alu 4 303 -7 21 0 0 0 chr11 118150674 118150695 -30632777 + AT_rich Low_complexity Low_complexity 1 21 0 518 276 87 25 chr11 118150830 118151026 -30632446 - MIR SINE MIR -32 230 23 1816 159 24 7 chr11 118151370 118151660 -30631812 - AluJo SINE Alu -17 295 1 314 337 51 28 chr11 118151724 118151902 -30631570 - MIR SINE MIR -70 192 11 1800 176 3 3 chr11 118152075 118152370 -30631102 + AluSx SINE Alu 1 295 -17 327 258 157 0 chr11 118152461 118152550 -30630922 + MIR SINE MIR 2 104 -158 843 255 46 63 chr11 118152621 118152860 -30630612 + MIR SINE MIR 2 236 -26 4138 82 22 13 chr11 118153397 118153946 -30629526 + MER41A LTR ERV1 1 554 0 333 118 342 0 chr11 118153946 118154022 -30629450 + MER41A-int LTR ERV1 1 102 -7654 2144 136 0 3 chr11 118154211 118154521 -30628951 + AluSx SINE Alu 1 309 -3 1412 99 0 5 chr11 118154531 118154723 -30628749 + AluSg/x SINE Alu 116 306 -4 1911 127 0 67 chr11 118154879 118155195 -30628277 - AluJo SINE Alu -17 295 1 1887 155 10 7 chr11 118155513 118155817 -30627655 + AluSx SINE Alu 5 309 -3 212 143 24 0 chr11 118155824 118155866 -30627606 + GA-rich Low_complexity Low_complexity 2 44 0 1999 121 7 7 chr11 118156819 118157154 -30626318 + AluSx SINE Alu 1 312 0 634 143 45 9 chr11 118157315 118157427 -30626045 - MER1B DNA MER1_type 0 339 224 2323 90 3 10 chr11 118157796 118158095 -30625377 + AluSx SINE Alu 1 297 -15 442 273 53 37 chr11 118158167 118158354 -30625118 - L1M4 LINE L1 -6269 273 84 2258 90 7 0 chr11 118158360 118158650 -30624822 - AluSg SINE Alu -18 292 1 2046 133 36 27 chr11 118158820 118159151 -30624321 + THE1B LTR MaLR 31 364 0 338 118 355 26 chr11 118159301 118159377 -30624095 + MER20 DNA MER1_type 119 219 0 214 151 38 38 chr11 118159377 118159430 -30624042 + MIR3 SINE MIR 153 205 -3 1926 156 0 25 chr11 118159798 118160118 -30623354 - AluJo SINE Alu 0 312 1 619 256 26 31 chr11 118160615 118160806 -30622666 + MIR SINE MIR 31 220 -42 1351 149 12 100 chr11 118160934 118161255 -30622217 + AluSx SINE Alu 2 294 -8 288 130 0 0 chr11 118161309 118161355 -30622117 + (GA)n Simple_repeat Simple_repeat 2 47 0 508 288 151 10 chr11 118162388 118162593 -30620879 - MIR SINE MIR -1 261 28 279 133 0 0 chr11 118162595 118162640 -30620832 + (T)n Simple_repeat Simple_repeat 1 45 0 25 0 0 0 chr11 118162661 118162686 -30620786 + GC_rich Low_complexity Low_complexity 1 25 0 602 333 74 20 chr11 118162844 118163195 -30620277 - L2 LINE L2 -472 2842 2473 264 243 84 37 chr11 118163262 118163369 -30620103 + MER5A DNA MER1_type 1 112 -77 882 99 99 0 chr11 118163567 118163688 -30619784 - AluSq/x SINE Alu -180 133 1 2164 119 7 0 chr11 118165138 118165433 -30618039 - AluSq SINE Alu -14 299 3 892 221 0 12 chr11 118165492 118165664 -30617808 + AluJb SINE Alu 129 298 -14 2577 229 122 87 chr11 118165832 118166111 -30617361 - L1ME LINE L1 -347 5819 5551 1889 181 25 14 chr11 118166111 118166470 -30617002 - MLT1A1 LTR MaLR -2 363 1 2577 229 122 87 chr11 118166470 118167260 -30616212 - L1ME LINE L1 -615 5551 4791 1889 159 3 7 chr11 118167260 118167556 -30615916 - AluSx SINE Alu -17 295 1 2577 229 122 87 chr11 118167556 118168064 -30615408 - L1ME LINE L1 -1375 4791 4303 897 123 0 27 chr11 118168064 118168210 -30615262 - FLAM_C SINE Alu -1 142 1 2577 229 122 87 chr11 118168210 118168351 -30615121 - L1ME LINE L1 -1863 4303 4168 2296 78 34 7 chr11 118168351 118168647 -30614825 - AluY SINE Alu -6 305 2 2577 229 122 87 chr11 118168647 118168696 -30614776 - L1ME LINE L1 -1998 4168 4122 1801 193 121 35 chr11 118168696 118169126 -30614346 + MLT1C LTR MaLR 1 467 0 2577 229 122 87 chr11 118169126 118169267 -30614205 - L1ME LINE L1 -2044 4122 3987 1838 157 3 10 chr11 118169267 118169567 -30613905 - AluJb SINE Alu -14 298 1 2577 229 122 87 chr11 118169567 118170211 -30613261 - L1ME LINE L1 -2179 3987 3015 6557 136 11 8 chr11 118170227 118170403 -30613069 - L1MA5A LINE L1 0 6297 6123 180 111 0 0 chr11 118170403 118170430 -30613042 + (TA)n Simple_repeat Simple_repeat 1 27 0 1898 157 10 0 chr11 118170430 118170723 -30612749 - AluJb SINE Alu -16 296 1 6557 136 11 8 chr11 118170723 118171799 -30611673 - L1MA5A LINE L1 -173 6124 5039 296 387 61 13 chr11 118171886 118172199 -30611273 - L1MDa LINE L1 -6210 330 3 9608 148 40 16 chr11 118172210 118174027 -30609445 + L1MA4 LINE L1 3622 5521 -779 2269 81 3 0 chr11 118174027 118174356 -30609116 + AluSq SINE Alu 1 330 0 9608 148 40 16 chr11 118174356 118175149 -30608323 + L1MA4 LINE L1 5521 6294 -6 3281 155 68 2 chr11 118175188 118175744 -30607728 - L1MB5 LINE L1 -8 6166 5574 24 0 0 0 chr11 118175755 118175779 -30607693 + AT_rich Low_complexity Low_complexity 1 24 0 1997 119 43 0 chr11 118175779 118176057 -30607415 - AluSx SINE Alu -22 290 1 554 279 72 62 chr11 118176167 118176669 -30606803 - L1MC/D LINE L1 -1993 5815 5309 370 269 42 120 chr11 118176827 118177110 -30606362 - MLT1L LTR MaLR -234 381 121 1263 177 7 81 chr11 118177354 118177539 -30605933 - AluJo SINE Alu -13 299 138 2230 79 0 28 chr11 118177539 118177853 -30605619 + AluY SINE Alu 1 306 0 1263 177 7 81 chr11 118177853 118177937 -30605535 - AluJo SINE Alu -174 138 49 21 0 0 0 chr11 118178058 118178079 -30605393 + AT_rich Low_complexity Low_complexity 1 21 0 207 114 0 0 chr11 118178487 118178522 -30604950 + (CTTG)n Simple_repeat Simple_repeat 2 36 0 715 165 0 41 chr11 118178525 118178800 -30604672 - FLAM_C SINE Alu 0 284 15 2289 101 0 3 chr11 118178888 118179184 -30604288 + AluSq SINE Alu 1 295 -18 237 65 0 0 chr11 118179316 118179347 -30604125 - LTR33A LTR ERVL -3 520 490 2197 57 46 7 chr11 118179685 118179968 -30603504 - AluY SINE Alu -17 294 1 1641 176 7 14 chr11 118180912 118181191 -30602281 + AluJo SINE Alu 11 287 -25 2246 122 0 0 chr11 118181193 118181489 -30601983 + AluSx SINE Alu 1 296 -16 39 0 0 0 chr11 118181489 118181528 -30601944 + AT_rich Low_complexity Low_complexity 1 39 0 2153 120 3 3 chr11 118182108 118182417 -30601055 + AluSg SINE Alu 1 309 -1 341 311 93 22 chr11 118182446 118182629 -30600843 - L2 LINE L2 -161 3111 2916 183 319 138 7 chr11 118182881 118183019 -30600453 - L2 LINE L2 -719 2595 2440 820 179 0 0 chr11 118185031 118185174 -30598298 - FLAM_C SINE Alu 0 144 2 209 245 0 0 chr11 118185997 118186046 -30597426 - MIR SINE MIR -123 139 91 2374 95 0 0 chr11 118186540 118186845 -30596627 + AluSx SINE Alu 1 305 -7 44557 41 5 4 chr11 118187939 118191965 -30591507 - L1P2 LINE L1 -706 5449 1412 187 31 62 0 chr11 118191965 118191997 -30591475 + (CATTT)n Simple_repeat Simple_repeat 5 38 0 44557 41 5 4 chr11 118191997 118193410 -30590062 - L1P2 LINE L1 -4743 1412 3 27911 82 10 6 chr11 118193411 118197182 -30586290 - L1P LINE L1 -2357 3789 1 964 236 25 158 chr11 118197195 118197792 -30585680 + MLT1G LTR MaLR 73 590 0 343 321 25 15 chr11 118197833 118198029 -30585443 - L1MEc LINE L1 -4341 2055 1858 4956 158 45 8 chr11 118198035 118199014 -30584458 - L1MB4 LINE L1 0 6180 5156 1000 110 7 0 chr11 118199014 118199150 -30584322 - AluSg/x SINE Alu -19 293 157 209 245 0 0 chr11 118199937 118199986 -30583486 - MIR SINE MIR -123 139 91 861 270 87 39 chr11 118200425 118200481 -30582991 + L1ME LINE L1 5308 5360 -761 2323 96 0 7 chr11 118200481 118200783 -30582689 + AluSx SINE Alu 1 300 -12 861 270 87 39 chr11 118200783 118201198 -30582274 + L1ME LINE L1 5360 5797 -324 2139 116 7 26 chr11 118201379 118201689 -30581783 - AluSx SINE Alu -8 304 1 903 126 0 28 chr11 118202863 118203006 -30580466 - FLAM_C SINE Alu -4 139 1 1857 146 3 53 chr11 118203053 118203376 -30580096 - AluSx SINE Alu -5 307 1 243 0 0 0 chr11 118204394 118204421 -30579051 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 200 247 0 118 chr11 118206534 118206627 -30576845 - L2 LINE L2 -1 3271 3190 426 321 49 5 chr11 118206762 118206950 -30576522 + MIR SINE MIR 35 231 -31 765 206 8 0 chr11 118207385 118207516 -30575956 + FLAM_A SINE Alu 1 132 -1 2138 139 0 0 chr11 118207530 118207833 -30575639 + AluSx SINE Alu 1 303 -9 342 283 33 0 chr11 118207836 118207928 -30575544 - MIR3 SINE MIR -29 179 85 1525 137 0 17 chr11 118208125 118208366 -30575106 + AluSq SINE Alu 1 237 -76 283 143 0 20 chr11 118208510 118208585 -30574887 + AluSq SINE Alu 247 302 0 1036 239 83 45 chr11 118208614 118208979 -30574493 - L2 LINE L2 -224 3089 2739 1719 150 146 53 chr11 118208979 118208999 -30574473 + LTR54B LTR ERV1 1 18 -480 2049 114 7 10 chr11 118208999 118209323 -30574149 + AluSx SINE Alu 1 312 0 1719 150 146 53 chr11 118209323 118209755 -30573717 + LTR54B LTR ERV1 18 495 -3 1036 239 83 45 chr11 118209755 118209828 -30573644 - L2 LINE L2 -574 2739 2670 2533 120 11 16 chr11 118209828 118210204 -30573268 - THE1C LTR MaLR -1 374 1 1036 239 83 45 chr11 118210204 118210269 -30573203 - L2 LINE L2 -643 2670 2562 572 242 0 8 chr11 118210274 118210398 -30573074 + L2 LINE L2 3191 3313 0 1880 137 0 11 chr11 118210846 118211131 -30572341 - AluSx SINE Alu -30 282 1 515 233 70 0 chr11 118211258 118211387 -30572085 - MIR SINE MIR -21 241 104 2117 107 31 3 chr11 118211417 118211708 -30571764 + AluSx SINE Alu 1 299 -13 3656 222 10 20 chr11 118211713 118212546 -30570926 + L1M1 LINE L1 2318 3141 -3005 650 157 19 19 chr11 118212548 118212656 -30570816 + FRAM SINE Alu 58 165 -11 9359 155 10 24 chr11 118212656 118212750 -30570722 + L1M1 LINE L1 3696 3790 -2510 1866 179 0 0 chr11 118212750 118213052 -30570420 + AluJb SINE Alu 1 302 -10 9359 155 10 24 chr11 118213052 118213741 -30569731 + L1M1 LINE L1 3790 4488 -1812 2123 112 22 22 chr11 118213741 118214053 -30569419 + AluSx SINE Alu 1 312 0 9359 155 10 24 chr11 118214053 118215386 -30568086 + L1M1 LINE L1 4488 5786 -514 2912 94 3 0 chr11 118215386 118215760 -30567712 - MER57B LTR ERV1 -59 375 1 352 240 237 10 chr11 118215961 118216148 -30567324 + MIR SINE MIR 27 262 0 1794 141 29 4 chr11 118216613 118216923 -30566549 + AluJo SINE Alu 1 317 0 229 395 18 9 chr11 118217084 118217198 -30566274 + MER5B DNA MER1_type 61 175 -3 206 306 0 0 chr11 118217282 118217354 -30566118 + (TAAA)n Simple_repeat Simple_repeat 2 73 0 2159 127 3 0 chr11 118217918 118218225 -30565247 + AluSx SINE Alu 1 308 -4 411 338 90 40 chr11 118218242 118218565 -30564907 + HAL1b LINE L1 268 606 -742 2097 145 0 0 chr11 118219436 118219746 -30563726 - AluJo SINE Alu -2 310 1 20346 93 9 14 chr11 118219746 118222701 -30560771 - L1P LINE L1 -750 5711 2773 9086 86 134 6 chr11 118222701 118224141 -30559331 - L1P3 LINE L1 -4584 1877 258 341 305 142 0 chr11 118224142 118224283 -30559189 - L1M4 LINE L1 -1029 5117 4957 2069 104 3 14 chr11 118224286 118224583 -30558889 - AluSc SINE Alu -15 294 1 2155 114 0 0 chr11 118224862 118225175 -30558297 + AluSg SINE Alu 1 313 0 2345 74 0 0 chr11 118226493 118226800 -30556672 + AluSx SINE Alu 6 312 0 2101 120 0 63 chr11 118227655 118227989 -30555483 + AluSq SINE Alu 1 313 0 2139 101 3 38 chr11 118227993 118228309 -30555163 + AluSx SINE Alu 1 305 -7 27 81 0 0 chr11 118234758 118234820 -30548652 + AT_rich Low_complexity Low_complexity 1 62 0 924 228 87 0 chr11 118235331 118235550 -30547922 - MIR SINE MIR -21 241 4 2715 32 0 10 chr11 118235579 118235892 -30547580 + AluY SINE Alu 1 310 -1 1359 104 49 0 chr11 118237672 118237855 -30545617 - AluSg/x SINE Alu -18 292 101 225 0 0 0 chr11 118238455 118238480 -30544992 + (A)n Simple_repeat Simple_repeat 1 25 0 928 139 0 0 chr11 118238485 118238622 -30544850 - FLAM_C SINE Alu 0 143 7 380 292 39 15 chr11 118238856 118238986 -30544486 + L2 LINE L2 2924 3056 -216 382 296 89 84 chr11 118239177 118239323 -30544149 + L2 LINE L2 2378 2522 -792 2269 96 0 3 chr11 118239323 118239616 -30543856 - AluSg SINE Alu -18 292 1 382 296 89 84 chr11 118239616 118239772 -30543700 + L2 LINE L2 2522 2685 -629 1018 186 71 48 chr11 118239772 118239913 -30543559 - MER20 DNA MER1_type -4 215 66 1769 182 14 0 chr11 118239913 118240204 -30543268 - AluJb SINE Alu -17 295 1 1018 186 71 48 chr11 118240204 118240272 -30543200 - MER20 DNA MER1_type -153 66 1 382 296 89 84 chr11 118240272 118240339 -30543133 + L2 LINE L2 2685 2750 -564 219 371 109 22 chr11 118240548 118240777 -30542695 + L2 LINE L2 2826 3074 -198 622 301 13 0 chr11 118240872 118241028 -30542444 - MER91B DNA MER1_type -10 180 23 367 315 79 8 chr11 118241044 118241171 -30542301 + L2 LINE L2 3177 3312 -1 184 364 92 17 chr11 118241250 118241423 -30542049 - MER5A DNA MER1_type 0 189 4 1812 144 45 3 chr11 118242385 118242676 -30540796 - AluJb SINE Alu -9 303 1 21 57 0 0 chr11 118243562 118243597 -30539875 + AT_rich Low_complexity Low_complexity 1 35 0 1258 190 0 25 chr11 118245821 118246063 -30537409 + MER46A DNA MER2_type 1 236 0 2268 101 0 22 chr11 118246147 118246465 -30537007 + AluSx SINE Alu 1 311 -1 236 296 25 0 chr11 118246879 118246960 -30536512 + CT-rich Low_complexity Low_complexity 3 85 0 593 239 38 95 chr11 118246975 118247019 -30536453 - MIR SINE MIR -12 250 205 1850 146 14 7 chr11 118247019 118247313 -30536159 - AluJb SINE Alu -16 296 1 593 239 38 95 chr11 118247313 118247532 -30535940 - MIR SINE MIR -57 205 2 1895 140 3 10 chr11 118247998 118248291 -30535181 - AluJb SINE Alu -21 291 1 2151 112 0 0 chr11 118248842 118249129 -30534343 - AluSx SINE Alu -24 288 2 1442 188 76 10 chr11 118250291 118250579 -30532893 - AluJo SINE Alu -5 307 1 215 174 22 0 chr11 118251006 118251052 -30532420 + T-rich Low_complexity Low_complexity 4 50 0 1258 159 0 0 chr11 118251243 118251432 -30532040 + AluJo SINE Alu 1 189 -123 380 288 119 0 chr11 118251442 118251560 -30531912 - L2 LINE L2 -8 3264 3133 239 193 175 0 chr11 118251635 118251692 -30531780 - L2 LINE L2 -61 3252 3186 1765 179 3 0 chr11 118251733 118252024 -30531448 + AluJo SINE Alu 1 292 -20 483 255 154 67 chr11 118252082 118252662 -30530810 - L2 LINE L2 -260 3053 2426 228 256 55 117 chr11 118252791 118252924 -30530548 - L1MC/D LINE L1 -2002 5806 5666 1842 120 64 0 chr11 118252924 118253207 -30530265 - AluSg SINE Alu -9 301 1 228 256 55 117 chr11 118253207 118253304 -30530168 - L1MC/D LINE L1 -2142 5666 5597 1920 126 0 66 chr11 118253304 118253621 -30529851 - AluJo SINE Alu -16 296 1 228 256 55 117 chr11 118253621 118253697 -30529775 - L1MC/D LINE L1 -2211 5597 5518 2179 100 3 10 chr11 118253934 118254233 -30529239 + AluSx SINE Alu 1 297 -15 611 196 101 14 chr11 118254271 118254419 -30529053 + MIR SINE MIR 102 262 0 402 227 64 0 chr11 118254574 118254684 -30528788 - L2 LINE L2 -8 3305 3189 2156 118 0 10 chr11 118255077 118255383 -30528089 - AluSx SINE Alu -9 303 1 1365 167 35 35 chr11 118255396 118255653 -30527819 - AluJb SINE Alu -45 267 11 1007 222 80 89 chr11 118257446 118257478 -30525994 - MLT1H LTR MaLR -8 616 585 2152 130 0 0 chr11 118257478 118257800 -30525672 - AluSx SINE Alu 0 312 1 1007 222 80 89 chr11 118257800 118258198 -30525274 - MLT1H LTR MaLR -39 585 106 262 200 100 55 chr11 118258372 118258482 -30524990 - MLT1H LTR MaLR -430 119 5 249 313 25 0 chr11 118258489 118258569 -30524903 - MIR SINE MIR -113 149 68 234 0 0 0 chr11 118260160 118260186 -30523286 + (T)n Simple_repeat Simple_repeat 1 26 0 257 277 109 25 chr11 118260322 118260441 -30523031 + MER91A DNA MER1_type 20 148 -48 537 232 125 36 chr11 118261053 118261221 -30522251 + MIR SINE MIR 2 184 -78 247 267 78 78 chr11 118261350 118261466 -30522006 - L2 LINE L2 -15 3257 3142 303 346 123 0 chr11 118261736 118261915 -30521557 - MIR SINE MIR -30 232 32 190 382 52 15 chr11 118261942 118262078 -30521394 - L2 LINE L2 -515 2799 2659 759 223 83 0 chr11 118262080 118262273 -30521199 + MER58A DNA MER1_type 16 224 0 276 310 123 27 chr11 118262287 118262474 -30520998 - L2 LINE L2 -692 2622 2418 1801 182 115 54 chr11 118262478 118262888 -30520584 + MLT1D LTR MaLR 1 444 -61 1787 100 0 8 chr11 118262888 118263128 -30520344 - AluSq SINE Alu -12 301 64 1801 182 115 54 chr11 118263128 118263179 -30520293 + MLT1D LTR MaLR 444 490 -15 400 317 18 30 chr11 118263527 118263694 -30519778 + MIR SINE MIR 2 166 -96 2203 108 7 0 chr11 118264946 118265242 -30518230 + AluSx SINE Alu 1 298 -14 3128 149 65 9 chr11 118265615 118266170 -30517302 + L1MB3 LINE L1 5588 6173 -10 321 297 51 14 chr11 118266189 118266327 -30517145 + HAL1 LINE L1 557 699 -1808 1669 166 7 10 chr11 118266338 118266634 -30516838 + AluJo SINE Alu 1 295 -17 237 65 0 0 chr11 118266972 118267003 -30516469 + LTR33A LTR ERVL 490 520 -3 2289 101 0 3 chr11 118267135 118267431 -30516041 - AluSq SINE Alu -18 295 1 716 165 0 41 chr11 118267519 118267794 -30515678 + FLAM_C SINE Alu 15 284 0 21 0 0 0 chr11 118268240 118268261 -30515211 + AT_rich Low_complexity Low_complexity 1 21 0 1261 173 11 85 chr11 118268382 118268467 -30515005 + AluJo SINE Alu 49 139 -173 2229 79 0 28 chr11 118268467 118268781 -30514691 - AluY SINE Alu 0 306 1 1261 173 11 85 chr11 118268781 118268966 -30514506 + AluJo SINE Alu 139 300 -12 370 269 42 120 chr11 118269211 118269494 -30513978 + MLT1L LTR MaLR 121 381 -234 537 278 74 60 chr11 118269652 118270152 -30513320 + L1MC/D LINE L1 5309 5815 -1993 1997 119 43 0 chr11 118270262 118270540 -30512932 + AluSx SINE Alu 1 290 -22 24 0 0 0 chr11 118270540 118270564 -30512908 + AT_rich Low_complexity Low_complexity 1 24 0 2439 153 74 2 chr11 118270575 118270993 -30512479 + L1MB5 LINE L1 5574 6021 -153 411 204 0 40 chr11 118271098 118271250 -30512222 + C-rich Low_complexity Low_complexity 2 147 0 863 159 13 25 chr11 118271700 118271857 -30511615 - L1PA7 LINE L1 -1 6153 5999 226 259 35 17 chr11 118272051 118272109 -30511363 + L1M3de LINE L1 1099 1157 -5496 210 37 0 0 chr11 118272321 118272348 -30511124 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2169 113 0 0 chr11 118272350 118272632 -30510840 - AluSq SINE Alu -31 282 1 362 295 11 0 chr11 118272801 118272896 -30510576 + MLT1J LTR MaLR 4 99 -412 205 368 0 0 chr11 118272954 118273022 -30510450 + MIR SINE MIR 50 117 -91 590 275 121 0 chr11 118273067 118273249 -30510223 + MIR SINE MIR 59 262 0 276 261 77 0 chr11 118273749 118273814 -30509658 + L2 LINE L2 3170 3239 -33 521 291 53 7 chr11 118274177 118274328 -30509144 + MIR SINE MIR 29 186 -76 618 268 113 5 chr11 118274364 118274558 -30508914 + MIR SINE MIR 48 262 0 589 282 111 33 chr11 118274651 118275013 -30508459 - L1MC/D LINE L1 -2164 5644 5255 1568 181 20 26 chr11 118275227 118275531 -30507941 - AluJo SINE Alu -10 302 1 183 287 59 40 chr11 118275550 118275651 -30507821 + L2 LINE L2 2304 2406 -908 281 267 22 0 chr11 118278394 118278484 -30504988 + C-rich Low_complexity Low_complexity 3 94 0 207 0 0 0 chr11 118278883 118278906 -30504566 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 255 282 243 0 chr11 118279724 118279827 -30503645 - L2 LINE L2 -9 3263 3136 645 218 58 6 chr11 118280194 118280350 -30503122 + MER106B DNA MER1_type 896 1059 0 2155 84 28 0 chr11 118280498 118280782 -30502690 + AluY SINE Alu 1 292 -19 281 374 137 14 chr11 118280796 118281242 -30502230 - L2 LINE L2 -618 2696 2196 1724 128 4 0 chr11 118281766 118282016 -30501456 - AluSx SINE Alu -2 310 60 321 342 119 25 chr11 118282157 118282435 -30501037 + L1M4 LINE L1 3974 4277 -1869 624 253 130 43 chr11 118282472 118282773 -30500699 - L2 LINE L2 -5 3308 2982 927 325 92 22 chr11 118282934 118283451 -30500021 - L2 LINE L2 -16 3297 2754 342 317 30 0 chr11 118283439 118283540 -30499932 + MIR SINE MIR 19 122 -140 * 192 125 0 0 chr11 118283602 118283634 -30499838 + (GA)n Simple_repeat Simple_repeat 1 32 0 181 328 0 0 chr11 118284187 118284245 -30499227 - L3b LINE CR1 -159 1424 1367 254 206 16 0 chr11 118286254 118286317 -30497155 + CT-rich Low_complexity Low_complexity 2 65 0 1669 192 10 0 chr11 118286319 118286627 -30496845 - AluJb SINE Alu -1 311 1 347 175 0 0 chr11 118286835 118286892 -30496580 - L2 LINE L2 0 3313 3257 820 216 0 18 chr11 118287128 118287295 -30496177 - AluJb SINE Alu -15 297 134 2368 132 19 29 chr11 118287437 118287816 -30495656 + THE1C LTR MaLR 1 375 0 914 152 0 0 chr11 118287819 118287957 -30495515 + L1MB5 LINE L1 6029 6166 -8 676 179 89 0 chr11 118287985 118288097 -30495375 + FLAM_A SINE Alu 2 123 -10 1774 160 24 17 chr11 118288694 118288982 -30494490 + AluJb SINE Alu 1 290 -22 203 357 105 49 chr11 118289179 118289504 -30493968 - L2 LINE L2 -2708 606 264 1174 182 13 40 chr11 118289984 118290209 -30493263 + MER20 DNA MER1_type 1 219 0 260 294 22 33 chr11 118290220 118290312 -30493160 + MIR SINE MIR 32 122 -140 219 379 11 11 chr11 118290444 118290539 -30492933 + L2 LINE L2 2614 2708 -606 981 175 0 30 chr11 118290605 118290771 -30492701 - FRAM SINE Alu -5 161 1 360 273 45 23 chr11 118292380 118292512 -30490960 - MER5A DNA MER1_type -1 188 54 * 483 259 42 21 chr11 118292403 118292546 -30490926 + MER5A DNA MER1_type 34 179 -10 2258 109 0 7 chr11 118292719 118293022 -30490450 - AluSx SINE Alu -11 301 1 737 182 106 0 chr11 118293251 118293405 -30490067 + FRAM SINE Alu 1 168 0 333 189 33 0 chr11 118293449 118293539 -30489933 + GA-rich Low_complexity Low_complexity 2 94 0 675 177 8 169 chr11 118293683 118293932 -30489540 + MER20 DNA MER1_type 3 211 -8 3932 163 31 8 chr11 118294015 118294652 -30488820 - Tigger7 DNA MER2_type -81 652 1 30 0 0 0 chr11 118294752 118294782 -30488690 + AT_rich Low_complexity Low_complexity 1 30 0 1536 143 34 71 chr11 118294784 118295078 -30488394 - AluJb SINE Alu -25 287 5 1282 35 0 0 chr11 118295676 118295818 -30487654 - AluY SINE Alu -14 297 156 464 304 56 6 chr11 118295889 118296050 -30487422 + HsTC2b DNA Tc2 5 173 -742 1429 203 47 32 chr11 118296070 118296220 -30487252 + HsTC2b DNA Tc2 331 477 -1421 1813 113 0 4 chr11 118296220 118296467 -30487005 + AluSx SINE Alu 54 299 -13 1429 203 47 32 chr11 118296467 118296724 -30486748 + HsTC2b DNA Tc2 477 920 2 361 338 27 14 chr11 118296724 118296872 -30486600 - MIR SINE MIR -111 151 2 2286 108 0 0 chr11 118297137 118297434 -30486038 + AluSx SINE Alu 1 297 -15 421 202 62 29 chr11 118297464 118297583 -30485889 - MIR SINE MIR -62 146 38 1956 136 7 13 chr11 118297822 118298130 -30485342 - AluSx SINE Alu -6 306 1 1286 170 130 47 chr11 118298419 118298696 -30484776 + AluJo SINE Alu 1 300 -2 21 0 0 0 chr11 118299467 118299488 -30483984 + AT_rich Low_complexity Low_complexity 1 21 0 2142 100 0 4 chr11 118299492 118299817 -30483655 + AluSg1 SINE Alu 1 324 0 2387 66 0 7 chr11 118300203 118300505 -30482967 - AluY SINE Alu -11 300 1 1701 164 23 10 chr11 118300534 118300838 -30482634 + AluJb SINE Alu 1 308 -4 2160 117 0 0 chr11 118300840 118301140 -30482332 + AluSx SINE Alu 1 300 -12 687 109 0 167 chr11 118301798 118301972 -30481500 + FRAM SINE Alu 1 140 -36 1068 255 8 0 chr11 118303820 118304055 -30479417 + MER8 DNA MER2_type 3 239 0 318 283 20 0 chr11 118304499 118304598 -30478874 - MIR SINE MIR -90 172 72 2834 139 7 31 chr11 118304722 118305167 -30478305 + MER57B LTR ERV1 1 434 0 25 31 0 0 chr11 118305302 118305334 -30478138 + AT_rich Low_complexity Low_complexity 1 32 0 705 243 118 59 chr11 118306334 118306569 -30476903 + L1MEd LINE L1 363 583 -5536 1992 150 0 13 chr11 118306569 118306882 -30476590 + AluSx SINE Alu 1 309 -3 2084 140 30 30 chr11 118306882 118307253 -30476219 - THE1C LTR MaLR 0 375 5 210 71 0 0 chr11 118307253 118307281 -30476191 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 705 243 118 59 chr11 118307281 118307812 -30475660 + L1MEd LINE L1 582 1224 -4895 235 304 98 49 chr11 118307826 118308112 -30475360 + HAL1 LINE L1 1414 1713 -794 849 139 44 15 chr11 118308253 118308390 -30475082 - FLAM_C SINE Alu -2 141 1 1139 292 66 25 chr11 118309680 118310194 -30473278 + HAL1 LINE L1 1 535 -1972 940 204 0 0 chr11 118310205 118310381 -30473091 + FRAM SINE Alu 1 176 0 1989 239 61 97 chr11 118310395 118310597 -30472875 + HAL1 LINE L1 538 746 -1761 1030 227 23 19 chr11 118310597 118310813 -30472659 + MER20 DNA MER1_type 3 219 0 1989 239 61 97 chr11 118310813 118310956 -30472516 + HAL1 LINE L1 746 893 -1614 2468 45 3 0 chr11 118310956 118311248 -30472224 - AluYa5 SINE Alu -18 293 1 2152 92 58 10 chr11 118311253 118311546 -30471926 - AluSx SINE Alu -5 307 1 1989 239 61 97 chr11 118311546 118311793 -30471679 + HAL1 LINE L1 897 1151 -1356 1503 190 3 24 chr11 118311793 118312088 -30471384 + AluJo SINE Alu 1 289 -23 1989 239 61 97 chr11 118312088 118312648 -30470824 + HAL1 LINE L1 1151 1656 -851 238 280 37 37 chr11 118312632 118312739 -30470733 + L1MEd LINE L1 1351 1457 -4915 * 976 162 0 0 chr11 118312750 118312892 -30470580 - AluJ SINE Alu -24 288 147 5739 178 227 29 chr11 118312892 118314356 -30469116 - MER52A LTR ERV1 0 1755 3 835 185 41 7 chr11 118314356 118314502 -30468970 - AluJ SINE Alu -160 152 2 660 292 103 19 chr11 118314503 118314969 -30468503 + L1MEd LINE L1 1480 1984 -4579 214 175 25 0 chr11 118315007 118315087 -30468385 + (TA)n Simple_repeat Simple_repeat 1 82 0 498 252 40 1 chr11 118315287 118315507 -30467965 + L1MEd LINE L1 2329 2569 -3825 814 269 83 48 chr11 118315562 118316318 -30467154 - L1MEd LINE L1 -2940 3189 2407 330 283 84 24 chr11 118316424 118316590 -30466882 - L1MEd LINE L1 -5933 186 11 245 100 0 50 chr11 118317206 118317266 -30466206 + (T)n Simple_repeat Simple_repeat 1 57 0 362 236 79 0 chr11 118317991 118318080 -30465392 + L2 LINE L2 3200 3295 -18 2305 69 0 10 chr11 118318101 118318392 -30465080 + AluY SINE Alu 9 296 -15 1998 122 3 51 chr11 118318402 118318713 -30464759 + AluJb SINE Alu 1 296 -16 1342 223 6 19 chr11 118320787 118321101 -30462371 + AluJo SINE Alu 1 310 -2 468 303 148 21 chr11 118321761 118322272 -30461200 - L2 LINE L2 -37 3276 2695 2287 171 25 53 chr11 118322280 118322793 -30460679 + L1MB8 LINE L1 5638 6136 -42 397 168 74 42 chr11 118323034 118323129 -30460343 - MER103 DNA DNA -6 160 63 662 212 15 15 chr11 118323664 118323801 -30459671 - L2 LINE L2 -5 3308 3172 1328 159 10 0 chr11 118323841 118324049 -30459423 - AluJo SINE Alu -16 296 87 2404 262 32 52 chr11 118324051 118324914 -30458558 - L2 LINE L2 -276 3037 2171 3023 134 89 64 chr11 118324914 118325351 -30458121 + LTR29 LTR ERV1 2 460 -162 2705 100 22 52 chr11 118325351 118325810 -30457662 - LTR56 LTR ERV1 0 445 1 3023 134 89 64 chr11 118325810 118325978 -30457494 + LTR29 LTR ERV1 460 622 0 1044 244 202 44 chr11 118325978 118326336 -30457136 - L2 LINE L2 -1152 2162 1862 4569 137 70 70 chr11 118326336 118326640 -30456832 + MER4D LTR ERV1 1 304 -599 2049 133 0 19 chr11 118326640 118326956 -30456516 + AluSx SINE Alu 1 310 -2 4569 137 70 70 chr11 118326956 118327554 -30455918 + MER4D LTR ERV1 303 903 0 1044 244 202 44 chr11 118327554 118327630 -30455842 - L2 LINE L2 -1452 1862 1799 1759 184 3 3 chr11 118327630 118327940 -30455532 + AluJb SINE Alu 2 311 -1 1044 244 202 44 chr11 118327940 118328074 -30455398 - L2 LINE L2 -1515 1799 1503 1841 166 3 0 chr11 118328191 118328475 -30454997 - AluSx SINE Alu -23 289 5 475 241 0 26 chr11 118328635 118328751 -30454721 - MER94 DNA DNA -6 128 16 3244 110 16 31 chr11 118328982 118329472 -30454000 - LTR26B LTR ERV1 -46 485 3 1287 123 8 210 chr11 118329550 118329618 -30453854 - L1MB8 LINE L1 0 6178 6098 1850 177 3 0 chr11 118329618 118329928 -30453544 + AluJb SINE Alu 1 311 -1 1287 123 8 210 chr11 118329928 118330259 -30453213 - L1MB8 LINE L1 -80 6098 5860 1902 167 0 10 chr11 118330993 118331281 -30452191 + AluJo SINE Alu 1 287 -25 294 29 0 0 chr11 118331281 118331316 -30452156 + (CCAA)n Simple_repeat Simple_repeat 2 36 0 1902 167 0 10 chr11 118331316 118331327 -30452145 + AluJo SINE Alu 287 297 -15 11698 188 55 19 chr11 118331959 118334832 -30448640 + L1M1 LINE L1 16 3751 -3814 1973 149 7 10 chr11 118334832 118335133 -30448339 + AluJo SINE Alu 1 300 -12 11698 188 55 19 chr11 118335133 118335973 -30447499 + L1M1 LINE L1 3751 4560 -3005 604 157 19 19 chr11 118335975 118336083 -30447389 + FRAM SINE Alu 58 165 -11 8527 155 10 24 chr11 118336083 118336177 -30447295 + L1M1 LINE L1 5115 5209 -2510 1889 179 0 0 chr11 118336177 118336479 -30446993 + AluJb SINE Alu 1 302 -10 8527 155 10 24 chr11 118336479 118337168 -30446304 + L1M1 LINE L1 5209 5907 -1812 2128 112 22 22 chr11 118337168 118337480 -30445992 + AluSx SINE Alu 1 312 0 8527 155 10 24 chr11 118337480 118338821 -30444651 + L1M1 LINE L1 5907 7213 -506 2680 86 3 0 chr11 118338824 118339186 -30444286 - MER57B LTR ERV1 -71 363 1 361 240 237 10 chr11 118339387 118339574 -30443898 + MIR SINE MIR 27 262 0 1794 141 29 4 chr11 118340039 118340349 -30443123 + AluJo SINE Alu 1 317 0 244 395 18 9 chr11 118340510 118340624 -30442848 + MER5B DNA MER1_type 61 175 -3 181 313 104 10 chr11 118340629 118340725 -30442747 + L2 LINE L2 3191 3295 -18 2163 127 3 0 chr11 118341344 118341651 -30441821 + AluSx SINE Alu 1 308 -4 520 353 77 28 chr11 118341668 118341991 -30441481 + HAL1b LINE L1 268 606 -742 1703 183 0 27 chr11 118344065 118344236 -30439236 - AluJo SINE Alu -11 301 140 2352 99 3 0 chr11 118344236 118344540 -30438932 - AluSp SINE Alu -8 305 1 1703 183 0 27 chr11 118344540 118344669 -30438803 - AluJo SINE Alu -172 140 9 25 31 0 0 chr11 118345006 118345038 -30438434 + AT_rich Low_complexity Low_complexity 1 32 0 1045 231 28 47 chr11 118345232 118345742 -30437730 - MER34B LTR ERV1 -4 561 11 777 197 43 11 chr11 118345845 118346033 -30437439 - L1MC4 LINE L1 -1099 6943 6750 2398 89 0 3 chr11 118346229 118346531 -30436941 - AluSx SINE Alu -11 301 1 225 0 0 0 chr11 118346635 118346660 -30436812 + (T)n Simple_repeat Simple_repeat 1 25 0 434 259 149 100 chr11 118346986 118347319 -30436153 - HAL1 LINE L1 -1441 1066 704 1774 163 6 10 chr11 118347319 118347632 -30435840 - AluJo SINE Alu 0 312 1 434 259 149 100 chr11 118347632 118347749 -30435723 - HAL1 LINE L1 -1803 704 594 2901 146 65 9 chr11 118347800 118348355 -30435117 - L1MB3 LINE L1 -10 6173 5588 2202 108 7 0 chr11 118348728 118349024 -30434448 - AluSx SINE Alu -14 298 1 409 317 18 30 chr11 118350276 118350443 -30433029 - MIR SINE MIR -96 166 2 1609 186 115 54 chr11 118350791 118350842 -30432630 - MLT1D LTR MaLR -15 490 444 1785 100 0 8 chr11 118350842 118351082 -30432390 + AluSq SINE Alu 64 301 -12 1609 186 115 54 chr11 118351082 118351492 -30431980 - MLT1D LTR MaLR -61 444 1 273 310 123 27 chr11 118351496 118351683 -30431789 + L2 LINE L2 2418 2622 -692 682 223 83 0 chr11 118351697 118351890 -30431582 - MER58A DNA MER1_type 0 224 16 201 382 52 15 chr11 118351892 118352028 -30431444 + L2 LINE L2 2659 2799 -515 317 354 113 0 chr11 118352044 118352239 -30431233 + MIR SINE MIR 21 237 -25 243 267 78 78 chr11 118352503 118352619 -30430853 + L2 LINE L2 3142 3257 -15 545 232 125 36 chr11 118352748 118352916 -30430556 - MIR SINE MIR -78 184 2 269 283 100 25 chr11 118353528 118353648 -30429824 - MER91A DNA MER1_type -48 148 20 1838 168 3 10 chr11 118353680 118353977 -30429495 - AluJo SINE Alu -15 297 3 208 330 96 9 chr11 118353979 118354094 -30429378 - L2 LINE L2 -251 3021 2897 1982 187 68 21 chr11 118354182 118354664 -30428808 + MLT1D LTR MaLR 1 505 0 884 221 139 34 chr11 118354808 118355189 -30428283 - LTR16B LTR ERVL -12 452 32 2083 118 7 0 chr11 118355758 118356045 -30427427 - AluSx SINE Alu -23 289 1 782 196 175 11 chr11 118356129 118356318 -30427154 - MER58A DNA MER1_type -3 221 2 2415 52 0 7 chr11 118356378 118356667 -30426805 + AluY SINE Alu 20 306 -5 729 172 10 118 chr11 118358389 118358592 -30424880 - MLT1B LTR MaLR 0 390 210 1975 93 82 0 chr11 118358622 118358891 -30424581 + AluSg SINE Alu 1 291 -19 2509 153 62 65 chr11 118358891 118359097 -30424375 - L1MA8 LINE L1 -26 6265 6060 1763 185 0 10 chr11 118359097 118359394 -30424078 - AluJo SINE Alu -18 294 1 2509 153 62 65 chr11 118359394 118359669 -30423803 - L1MA8 LINE L1 -231 6060 5784 381 43 0 0 chr11 118359669 118359716 -30423756 + (TG)n Simple_repeat Simple_repeat 2 48 0 2509 153 62 65 chr11 118359716 118359882 -30423590 - L1MA8 LINE L1 -507 5784 5619 822 175 22 79 chr11 118359898 118360126 -30423346 - MLT1B LTR MaLR -175 215 1 465 233 50 33 chr11 118360420 118360540 -30422932 + L2 LINE L2 3150 3271 -1 2028 129 10 3 chr11 118361029 118361324 -30422148 - AluSx SINE Alu -15 297 1 1047 125 90 51 chr11 118363359 118363451 -30420021 - L1MD3 LINE L1 0 7995 7908 2105 98 63 0 chr11 118363451 118363738 -30419734 - AluSc SINE Alu -4 305 1 1047 125 90 51 chr11 118363738 118363901 -30419571 - L1MD3 LINE L1 -87 7908 7730 1823 188 0 13 chr11 118364792 118365100 -30418372 - AluJo SINE Alu -8 304 1 21 36 0 0 chr11 118365246 118365274 -30418198 + AT_rich Low_complexity Low_complexity 1 28 0 331 211 0 99 chr11 118366633 118366698 -30416774 - L1M4 LINE L1 -3734 2412 2342 2216 101 0 0 chr11 118366698 118366986 -30416486 - AluSx SINE Alu -24 288 1 331 211 0 99 chr11 118366986 118367081 -30416391 - L1M4 LINE L1 -3804 2342 2268 315 291 209 6 chr11 118367401 118367573 -30415899 - HAL1 LINE L1 -852 1655 1449 597 217 130 9 chr11 118368209 118368439 -30415033 - L1MC5 LINE L1 -726 7235 6978 184 57 0 132 chr11 118368720 118368773 -30414699 + (T)n Simple_repeat Simple_repeat 1 46 0 7474 12 0 9 chr11 118368775 118369755 -30413717 - L1HS LINE L1 -2 6153 5183 2791 67 5 0 chr11 118369749 118370139 -30413333 - L1P LINE L1 -5752 394 3 * 5272 152 27 42 chr11 118370665 118371378 -30412094 - L1MC1 LINE L1 -2 6331 5609 2228 90 0 3 chr11 118371378 118371667 -30411805 - AluY SINE Alu -23 288 1 5272 152 27 42 chr11 118371667 118371893 -30411579 - L1MC1 LINE L1 -724 5609 5381 1463 124 0 18 chr11 118371893 118372110 -30411362 - AluJb SINE Alu -16 296 84 5272 152 27 42 chr11 118372110 118372422 -30411050 - L1MC1 LINE L1 -952 5381 5090 636 288 60 22 chr11 118372534 118372853 -30410619 - L1MC5 LINE L1 -1886 5922 5592 364 281 61 31 chr11 118372860 118373056 -30410416 - L1MC4 LINE L1 -5 8037 7836 393 288 45 51 chr11 118373111 118373288 -30410184 - L1ME2 LINE L1 -19 6145 5970 262 270 99 9 chr11 118373795 118373906 -30409566 + L2 LINE L2 3150 3270 -2 217 253 100 100 chr11 118374004 118374154 -30409318 + L2 LINE L2 2934 3083 -189 922 143 0 0 chr11 118374521 118374647 -30408825 + FLAM_C SINE Alu 6 131 -12 964 230 173 43 chr11 118375664 118376411 -30407061 + Charlie2 DNA MER1_type 1856 2699 -163 784 176 38 0 chr11 118377348 118377479 -30405993 - AluJb SINE Alu -55 257 122 2198 65 41 0 chr11 118377485 118377779 -30405693 - L1PA7 LINE L1 -7 6147 5842 524 138 53 0 chr11 118378480 118378574 -30404898 - Tigger7 DNA MER2_type 0 2487 2389 * 1360 163 26 41 chr11 118378572 118378842 -30404630 - Tigger7 DNA MER2_type -466 267 2 499 207 103 69 chr11 118378847 118378992 -30404480 - MIR SINE MIR -108 154 5 2254 106 0 6 chr11 118379180 118379492 -30403980 + AluSg SINE Alu 1 310 0 352 287 57 6 chr11 118379608 118379765 -30403707 + L1ME LINE L1 5527 5691 -430 2258 89 0 0 chr11 118380748 118381057 -30402415 - AluSx SINE Alu 0 310 2 783 258 215 22 chr11 118383237 118383754 -30399718 + L2 LINE L2 2642 3283 -30 1259 260 66 66 chr11 118383800 118384342 -30399130 - MLT1F LTR MaLR 0 542 1 288 309 122 28 chr11 118384833 118385014 -30398458 - MIR SINE MIR -56 206 9 446 219 58 9 chr11 118385237 118385366 -30398106 + MIR SINE MIR 35 168 -62 321 335 81 23 chr11 118386070 118386243 -30397229 - MIR3 SINE MIR -7 201 19 2205 109 10 13 chr11 118386252 118386565 -30396907 - AluSx SINE Alu 0 312 1 880 130 72 85 chr11 118387648 118387871 -30395601 + L1MA8 LINE L1 6071 6290 -1 2254 90 0 0 chr11 118387921 118388209 -30395263 - AluSc SINE Alu -21 288 1 236 345 58 0 chr11 118389500 118389587 -30393885 + L2 LINE L2 2970 3061 -211 2222 120 0 0 chr11 118390553 118390853 -30392619 - AluSx SINE Alu -12 300 1 3097 130 62 15 chr11 118391536 118392119 -30391353 - L1MC1 LINE L1 0 6333 5724 385 197 180 25 chr11 118392125 118392247 -30391225 - MER31-int LTR ERV1 -1166 3770 3630 1856 109 0 11 chr11 118392471 118392737 -30390735 - L1MC1 LINE L1 -578 5755 5493 781 177 31 139 chr11 118392734 118393051 -30390421 - L1M4 LINE L1 -2133 4293 4011 * 263 178 30 40 chr11 118393035 118393136 -30390336 - L1MCa LINE L1 -1709 4717 4618 * 1794 151 0 0 chr11 118393153 118393412 -30390060 - AluSx SINE Alu -16 296 38 335 233 27 0 chr11 118393413 118393486 -30389986 - L1M4 LINE L1 -2786 3360 3286 1405 221 16 0 chr11 118393501 118393813 -30389659 - L1MCa LINE L1 -1821 4605 4289 1539 245 114 19 chr11 118393813 118394478 -30388994 - L1MCa LINE L1 -2402 4024 3297 4656 134 147 14 chr11 118394525 118395437 -30388035 - Tigger3b DNA MER2_type -124 1107 75 1096 164 126 5 chr11 118395438 118395645 -30387827 - AluJo SINE Alu -80 232 1 483 184 0 0 chr11 118395647 118395723 -30387749 - Tigger3b DNA MER2_type -1155 76 1 9487 181 96 38 chr11 118395723 118395933 -30387539 - L1MCa LINE L1 -3121 3305 3109 2116 118 0 0 chr11 118395933 118396213 -30387259 - AluSx SINE Alu -32 280 1 9487 181 96 38 chr11 118396213 118399127 -30384345 - L1MCa LINE L1 -3317 3109 1 320 175 217 25 chr11 118399399 118399519 -30383953 + L1MC5 LINE L1 7786 7928 -33 1444 173 13 50 chr11 118399812 118400112 -30383360 + AluJo SINE Alu 1 289 -23 1830 136 14 17 chr11 118400682 118400976 -30382496 - AluSx SINE Alu -19 293 1 26 30 0 0 chr11 118400990 118401023 -30382449 + AT_rich Low_complexity Low_complexity 1 33 0 524 149 198 0 chr11 118401363 118401484 -30381988 - L1MA8 LINE L1 -2 6289 6145 2188 114 0 7 chr11 118401885 118402191 -30381281 - AluSq SINE Alu -9 304 1 432 251 69 91 chr11 118402285 118402456 -30381016 - MIR SINE MIR 0 262 96 1881 149 3 20 chr11 118402456 118402758 -30380714 + AluSx SINE Alu 1 297 -15 432 251 69 91 chr11 118402758 118402817 -30380655 - MIR SINE MIR -166 96 37 21 0 0 0 chr11 118403684 118403705 -30379767 + AT_rich Low_complexity Low_complexity 1 21 0 435 287 84 10 chr11 118403868 118404064 -30379408 - MIR SINE MIR -3 259 45 708 176 8 0 chr11 118404527 118404646 -30378826 - FLAM_C SINE Alu -13 120 1 273 335 65 32 chr11 118404717 118404902 -30378570 - L3b LINE CR1 -116 1467 1277 1902 155 0 7 chr11 118405187 118405471 -30378001 - AluJb SINE Alu -30 282 1 185 263 35 35 chr11 118405824 118405881 -30377591 - L2 LINE L2 -511 2803 2747 220 384 80 8 chr11 118406331 118406456 -30377016 - L2 LINE L2 -5 3267 3134 945 251 18 5 chr11 118406557 118406776 -30376696 - MIR SINE MIR -29 233 12 277 276 66 66 chr11 118407140 118407292 -30376180 - MIR SINE MIR -24 238 87 204 111 0 0 chr11 118407813 118407849 -30375623 + (GAA)n Simple_repeat Simple_repeat 1 36 0 595 279 75 46 chr11 118408887 118409127 -30374345 - MIR SINE MIR -15 247 1 3081 197 86 20 chr11 118409456 118410663 -30372809 - L1ME1 LINE L1 -34 6132 4847 2404 247 87 27 chr11 118410671 118411737 -30371735 - L1ME1 LINE L1 -1350 4796 3667 424 127 97 112 chr11 118412610 118412744 -30370728 - MER5C DNA MER1_type -105 219 88 348 170 94 38 chr11 118412943 118413049 -30370423 - L1ME4a LINE L1 -10 6111 6000 1690 194 0 13 chr11 118413083 118413397 -30370075 - AluJo SINE Alu -2 310 1 383 197 145 0 chr11 118413441 118413558 -30369914 - L1ME4a LINE L1 -265 5856 5723 548 199 183 0 chr11 118414249 118414380 -30369092 + FRAM SINE Alu 1 155 -21 198 338 88 0 chr11 118415012 118415092 -30368380 + L2 LINE L2 3186 3272 0 2353 90 3 0 chr11 118415630 118415929 -30367543 - AluSx SINE Alu -12 300 1 749 162 11 141 chr11 118416091 118416276 -30367196 - AluJb SINE Alu -12 300 140 222 282 232 19 chr11 118416755 118416944 -30366528 - MIR SINE MIR -15 247 16 24 32 0 0 chr11 118417413 118417444 -30366028 + AT_rich Low_complexity Low_complexity 1 31 0 255 309 79 46 chr11 118418052 118418204 -30365268 - MIR SINE MIR -69 193 37 263 178 67 0 chr11 118419860 118419905 -30363567 - L2 LINE L2 -4 3268 3221 359 266 83 0 chr11 118420602 118420711 -30362761 - MER5C DNA MER1_type 0 324 207 1126 206 122 49 chr11 118421083 118421452 -30362020 + MSTD LTR MaLR 1 396 0 1233 243 154 18 chr11 118423321 118423774 -30359698 - LTR40a LTR ERVL -2 517 3 187 320 94 47 chr11 118424037 118424165 -30359307 + L2 LINE L2 3180 3313 0 5774 152 20 8 chr11 118424555 118426407 -30357065 - L1PA15 LINE L1 -1 6164 4123 5019 188 32 12 chr11 118426404 118426555 -30356917 + L1P LINE L1 3028 3174 -2972 * 1989 141 0 3 chr11 118426555 118426863 -30356609 + AluSx SINE Alu 1 307 0 2175 125 3 0 chr11 118426866 118427170 -30356302 + AluSg SINE Alu 3 307 -3 5019 188 32 12 chr11 118427170 118428096 -30355376 + L1P LINE L1 3175 4132 -2014 22 70 0 0 chr11 118428517 118428560 -30354912 + AT_rich Low_complexity Low_complexity 1 43 0 503 148 40 34 chr11 118429650 118429826 -30353646 + CT-rich Low_complexity Low_complexity 2 178 0 1609 147 66 8 chr11 118429857 118430116 -30353356 - AluJb SINE Alu -38 274 1 910 245 12 16 chr11 118430476 118430721 -30352751 - L1MB8 LINE L1 -5 6173 5930 2787 181 28 46 chr11 118430769 118431417 -30352055 - L1MB8 LINE L1 -176 6002 5367 432 286 31 19 chr11 118431855 118432016 -30351456 + MER117 DNA MER1_type 2 164 -33 504 327 58 27 chr11 118432640 118432900 -30350572 + L1ME LINE L1 110 377 -5693 * 764 256 129 19 chr11 118432892 118433201 -30350271 + L1ME LINE L1 2458 2800 -3280 1149 238 69 14 chr11 118433265 118433542 -30349930 - AluJo SINE Alu -10 292 1 312 27 0 0 chr11 118433629 118433666 -30349806 + (TC)n Simple_repeat Simple_repeat 2 38 0 584 126 0 0 chr11 118433691 118433778 -30349694 - AluY SINE Alu -224 87 1 371 192 51 0 chr11 118435112 118435190 -30348282 - Charlie4 DNA MER1_type -31 1930 1849 21 82 0 0 chr11 118435290 118435339 -30348133 + AT_rich Low_complexity Low_complexity 1 49 0 968 189 12 12 chr11 118435340 118435509 -30347963 - FRAM SINE Alu -14 162 1 340 271 23 15 chr11 118436237 118436370 -30347102 - FRAM SINE Alu -5 161 28 763 167 8 0 chr11 118436404 118436557 -30346915 - FLAM_C SINE Alu 0 154 1 468 187 37 28 chr11 118437010 118437117 -30346355 + Charlie4 DNA MER1_type 1847 1954 -7 232 178 0 22 chr11 118438427 118438472 -30345000 + L2 LINE L2 3266 3309 -4 272 167 17 0 chr11 118439892 118439952 -30343520 + Charlie7 DNA MER1_type 32 92 -2520 940 205 73 10 chr11 118440865 118441070 -30342402 + MER58A DNA MER1_type 7 224 0 608 260 56 31 chr11 118441167 118441363 -30342109 + MIR SINE MIR 1 201 -61 296 221 13 0 chr11 118441406 118441483 -30341989 + CT-rich Low_complexity Low_complexity 2 79 0 1455 209 91 45 chr11 118443909 118444392 -30339080 - MLT1D LTR MaLR 0 505 1 25 31 0 0 chr11 118444670 118444702 -30338770 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr11 118446152 118446174 -30337298 + AT_rich Low_complexity Low_complexity 1 22 0 231 259 26 112 chr11 118447493 118447609 -30335863 + MIR3 SINE MIR 88 193 -15 23 0 0 0 chr11 118449627 118449650 -30333822 + AT_rich Low_complexity Low_complexity 1 23 0 2225 103 10 3 chr11 118449862 118450163 -30333309 + AluSq SINE Alu 1 303 -10 222 266 76 63 chr11 118452213 118452292 -30331180 + L2 LINE L2 3193 3272 0 427 139 0 42 chr11 118453230 118453302 -30330170 + Tigger2 DNA MER2_type 1 69 -2649 * 2853 116 15 51 chr11 118453288 118453755 -30329717 + Tigger2 DNA MER2_type 2269 2718 0 374 299 91 33 chr11 118453781 118454055 -30329417 + Charlie7 DNA MER1_type 42 331 -2281 369 251 131 40 chr11 118454386 118454561 -30328911 - L1MEc LINE L1 -4729 1581 1391 291 197 45 15 chr11 118454599 118454665 -30328807 - L1MEc LINE L1 -4866 1253 1186 731 224 73 80 chr11 118454730 118455194 -30328278 - L1MEc LINE L1 -5036 1083 623 1621 158 75 13 chr11 118455217 118455603 -30327869 - Charlie1 DNA MER1_type -14 2747 2338 180 111 0 0 chr11 118455603 118455630 -30327842 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1508 104 31 35 chr11 118455630 118455890 -30327582 - L1MA1 LINE L1 -3 6299 6041 5536 78 30 29 chr11 118455890 118456824 -30326648 - L1MA2 LINE L1 -209 6095 5161 1847 94 59 4 chr11 118456824 118457079 -30326393 - AluY SINE Alu 0 311 43 1093 228 162 8 chr11 118457096 118457447 -30326025 - MER90 LTR ERV1 -166 448 44 794 216 29 0 chr11 118457482 118457653 -30325819 - Charlie1a DNA MER1_type -945 510 335 915 259 100 48 chr11 118457655 118458115 -30325357 + MLT1D LTR MaLR 2 485 -20 1347 89 5 26 chr11 118458116 118458306 -30325166 + MER1B DNA MER1_type 33 218 -79 446 181 0 0 chr11 118458308 118458380 -30325092 + MER1B DNA MER1_type 262 333 0 * 520 231 107 0 chr11 118458380 118458499 -30324973 - Charlie1a DNA MER1_type -1277 178 47 24 0 0 0 chr11 118458922 118458946 -30324526 + AT_rich Low_complexity Low_complexity 1 24 0 1880 130 43 0 chr11 118462538 118462814 -30320658 - AluSx SINE Alu -21 291 4 217 184 20 0 chr11 118462911 118462960 -30320512 + T-rich Low_complexity Low_complexity 2 51 0 258 345 50 0 chr11 118465533 118465652 -30317820 + MIR SINE MIR 79 203 -59 290 355 92 0 chr11 118465667 118465808 -30317664 - L2 LINE L2 0 3313 3160 888 141 7 0 chr11 118466393 118466542 -30316930 - L1MB2 LINE L1 -4 6167 6018 2346 120 21 0 chr11 118466646 118467021 -30316451 - L1PB1 LINE L1 0 6151 5769 1899 129 4 0 chr11 118467142 118467406 -30316066 - AluSx SINE Alu -43 269 5 347 91 0 0 chr11 118467406 118467450 -30316022 - AluY SINE Alu -259 44 1 6278 169 37 10 chr11 118467453 118469336 -30314136 - L1PB1 LINE L1 -370 5781 3852 2286 74 6 64 chr11 118469610 118469936 -30313536 + AluSc SINE Alu 1 307 -2 623 273 65 41 chr11 118471005 118471298 -30312174 + L1MC/D LINE L1 5359 5658 -2150 248 280 160 76 chr11 118471674 118471949 -30311523 + L2 LINE L2 3015 3312 -1 1587 171 7 44 chr11 118472445 118472743 -30310729 - AluJb SINE Alu -15 297 11 688 218 14 0 chr11 118472913 118473055 -30310417 - L1ME2 LINE L1 -19 6145 6002 1950 43 4 4 chr11 118473205 118473439 -30310033 + AluY SINE Alu 74 307 -4 4032 87 38 22 chr11 118473952 118474582 -30308890 - MER51C LTR ERV1 0 640 1 1894 160 0 7 chr11 118474968 118475274 -30308198 - AluSx SINE Alu -8 304 1 403 295 93 26 chr11 118475606 118475777 -30307695 - MIR SINE MIR -42 220 34 2262 116 3 0 chr11 118476097 118476408 -30307064 - AluSx SINE Alu 0 312 1 353 298 91 60 chr11 118477638 118477890 -30305582 - HAL1 LINE L1 -2246 261 2 764 258 76 8 chr11 118479197 118479461 -30304011 - L1ME2 LINE L1 -150 6012 5731 471 226 33 119 chr11 118479561 118479804 -30303668 - L1ME LINE L1 -5539 531 310 1819 228 80 13 chr11 118480021 118480481 -30302991 + MLT1E2 LTR MaLR 136 626 0 350 266 95 32 chr11 118480502 118480660 -30302812 - L1ME LINE L1 -5900 170 3 2080 136 23 0 chr11 118480704 118481006 -30302466 - AluSx SINE Alu -3 309 1 30 0 0 24 chr11 118481023 118481037 -30302435 + AT_rich Low_complexity Low_complexity 1 14 -26 10327 46 30 0 chr11 118481037 118483065 -30300407 + L1PA6 LINE L1 4100 6154 0 30 0 0 24 chr11 118483065 118483091 -30300381 + AT_rich Low_complexity Low_complexity 14 40 0 252 311 135 21 chr11 118483298 118483491 -30299981 + MIR SINE MIR 31 245 -17 3034 138 73 4 chr11 118484318 118484840 -30298632 - L1PA16 LINE L1 -2 6164 5607 217 402 93 9 chr11 118486523 118486630 -30296842 + L2 LINE L2 3116 3231 -41 266 320 57 42 chr11 118486658 118486989 -30296483 - L2 LINE L2 -1362 1952 1617 3844 165 54 6 chr11 118487055 118487775 -30295697 - L1PA16 LINE L1 0 7604 6850 600 152 143 0 chr11 118487795 118487900 -30295572 - AluJb SINE Alu -25 287 168 2841 187 20 11 chr11 118487900 118488510 -30294962 - L1PA16 LINE L1 -815 6769 6155 7333 227 52 24 chr11 118488520 118488771 -30294701 - L1PA16 LINE L1 -2208 5376 5134 258 32 0 0 chr11 118488771 118488802 -30294670 + (TTG)n Simple_repeat Simple_repeat 3 33 0 7333 227 52 24 chr11 118488802 118491034 -30292438 - L1PA16 LINE L1 -2450 5134 2966 2218 90 14 3 chr11 118491034 118491323 -30292149 + AluSp SINE Alu 1 292 -21 7333 227 52 24 chr11 118491323 118491745 -30291727 - L1PA16 LINE L1 -4618 2966 2348 2147 126 0 0 chr11 118491745 118492046 -30291426 - AluSp SINE Alu -12 301 1 7333 227 52 24 chr11 118492046 118492174 -30291298 - L1PA16 LINE L1 -5236 2348 2225 866 235 43 39 chr11 118493081 118493311 -30290161 - MLT1L LTR MaLR -9 606 376 414 202 24 0 chr11 118493318 118493402 -30290070 + MER5B DNA MER1_type 73 158 -20 313 258 121 0 chr11 118493410 118493534 -30289938 - MLT1L LTR MaLR -439 176 38 239 311 84 17 chr11 118494208 118494327 -30289145 + L2 LINE L2 2656 2782 -532 645 280 158 26 chr11 118494383 118494784 -30288688 + MLT1G1 LTR MaLR 1 535 -60 612 266 21 42 chr11 118494838 118495079 -30288393 - L1ME1 LINE L1 -4 6162 5927 2264 224 80 20 chr11 118495097 118496341 -30287131 - L1ME1 LINE L1 -431 5733 4420 318 233 26 26 chr11 118496930 118497046 -30286426 - L1ME1 LINE L1 -1742 4404 4289 * 3309 92 18 89 chr11 118497044 118497663 -30285809 - L1MA4A LINE L1 -168 6135 5561 1946 267 81 35 chr11 118497646 118498198 -30285274 - L1ME1 LINE L1 -1871 4275 3750 * 2092 124 3 10 chr11 118498198 118498512 -30284960 - AluSx SINE Alu 0 312 1 1946 267 81 35 chr11 118498512 118498693 -30284779 - L1ME1 LINE L1 -2396 3750 3579 4556 55 0 56 chr11 118498693 118499333 -30284139 - L1PA5 LINE L1 -3 6151 5548 1946 267 81 35 chr11 118499333 118499535 -30283937 - L1ME1 LINE L1 -2567 3579 3388 213 39 0 0 chr11 118499535 118499561 -30283911 + (TC)n Simple_repeat Simple_repeat 1 26 0 1946 267 81 35 chr11 118499561 118499687 -30283785 - L1ME1 LINE L1 -2758 3388 3163 1180 218 92 16 chr11 118500076 118500392 -30283080 + MSTD LTR MaLR 1 340 -56 2293 99 0 0 chr11 118500423 118500715 -30282757 - AluSc SINE Alu -17 292 1 357 164 60 0 chr11 118500715 118500782 -30282690 + MSTD LTR MaLR 326 396 0 1892 147 33 25 chr11 118501665 118502026 -30281446 - L1MB2 LINE L1 -5 6166 5803 872 188 35 15 chr11 118502836 118503033 -30280439 - MER105 DNA DNA 0 204 4 322 313 97 8 chr11 118503108 118503242 -30280230 + L2 LINE L2 3164 3309 -4 794 122 0 143 chr11 118503298 118503487 -30279985 - FRAM SINE Alu -4 162 1 2171 63 46 46 chr11 118503547 118503849 -30279623 + AluY SINE Alu 3 304 -7 248 289 11 100 chr11 118505082 118505172 -30278300 - MIR SINE MIR -180 82 1 288 53 0 0 chr11 118505394 118505432 -30278040 + (TG)n Simple_repeat Simple_repeat 2 39 0 1070 168 124 0 chr11 118505515 118505724 -30277748 - MER46A DNA MER2_type 0 236 2 2090 98 37 0 chr11 118506695 118506992 -30276480 + AluSp SINE Alu 1 308 -5 1612 191 7 10 chr11 118507597 118507900 -30275572 + AluJb SINE Alu 1 302 -10 1784 261 54 36 chr11 118507908 118508467 -30275005 - MLT1E LTR MaLR -24 569 1 2278 95 0 16 chr11 118509327 118509644 -30273828 - AluSq SINE Alu -1 312 1 721 304 155 40 chr11 118509835 118510655 -30272817 - L2 LINE L2 -23 3290 2386 343 341 150 28 chr11 118511010 118511509 -30271963 - L2 LINE L2 -942 2372 1813 329 234 168 9 chr11 118512984 118513091 -30270381 - L2 LINE L2 -1 3312 3189 193 255 0 43 chr11 118513141 118513188 -30270284 + L2 LINE L2 3250 3294 -19 238 216 340 12 chr11 118514311 118514473 -30268999 + L2 LINE L2 3095 3309 -4 25 83 0 0 chr11 118514935 118514995 -30268477 + AT_rich Low_complexity Low_complexity 1 60 0 2119 130 7 0 chr11 118516081 118516382 -30267090 + AluSx SINE Alu 1 303 -9 559 285 153 9 chr11 118516530 118516758 -30266714 - L1MC/D LINE L1 -2151 5657 5397 404 304 91 4 chr11 118517064 118517307 -30266165 - L1MC/D LINE L1 -1103 5043 4780 241 221 92 53 chr11 118518479 118518610 -30264862 - L1ME4a LINE L1 -39 6082 5947 824 233 135 23 chr11 118518727 118518942 -30264530 + MER8 DNA MER2_type 1 239 0 897 324 126 35 chr11 118519252 118519830 -30263642 + L2 LINE L2 1772 2402 -912 255 271 119 95 chr11 118519848 118519937 -30263535 + L2 LINE L2 2526 2611 -703 2233 104 0 3 chr11 118519937 118520235 -30263237 - AluSx SINE Alu -15 297 1 255 271 119 95 chr11 118520235 118520355 -30263117 + L2 LINE L2 2611 2740 -574 790 145 26 71 chr11 118520360 118520568 -30262904 + MER6 DNA MER2_type -65 865 0 604 348 190 4 chr11 118520572 118521047 -30262425 + L2 LINE L2 2751 3311 -2 22 0 0 0 chr11 118522863 118522885 -30260587 + AT_rich Low_complexity Low_complexity 1 22 0 2444 79 0 3 chr11 118522977 118523281 -30260191 - AluSx SINE Alu -9 303 1 254 260 177 10 chr11 118523491 118523587 -30259885 + MIR SINE MIR 124 235 -27 264 224 0 30 chr11 118574700 118574767 -30208705 + MLT1F1 LTR MaLR 59 123 -444 2939 173 40 11 chr11 118574767 118575340 -30208132 + L1MC3 LINE L1 7189 7778 -7 715 172 8 8 chr11 118575526 118575648 -30207824 + AluSq/x SINE Alu 2 123 -190 2462 221 37 52 chr11 118576039 118576766 -30206706 - L1M4 LINE L1 -1121 5025 4310 22 0 0 30 chr11 118576766 118576778 -30206694 + AT_rich Low_complexity Low_complexity 1 12 -20 629 103 41 0 chr11 118576778 118576875 -30206597 - L1PA13 LINE L1 -8 6155 6055 22 0 0 30 chr11 118576875 118576895 -30206577 + AT_rich Low_complexity Low_complexity 12 32 0 2219 74 0 53 chr11 118577004 118577303 -30206169 - AluSc SINE Alu -25 284 2 338 344 8 25 chr11 118577468 118577590 -30205882 - MIR3 SINE MIR -52 156 37 608 270 20 7 chr11 118577609 118577757 -30205715 - MER5B DNA MER1_type 0 178 29 911 182 11 17 chr11 118577795 118577976 -30205496 - L1MC4a LINE L1 0 7808 7629 265 283 0 0 chr11 118578049 118578109 -30205363 + MER5B DNA MER1_type 119 178 0 751 151 0 0 chr11 118579727 118579833 -30203639 + U6 snRNA snRNA 2 107 0 3350 113 18 30 chr11 118579846 118580376 -30203096 + L1PA11 LINE L1 4797 5321 -853 2142 122 3 3 chr11 118580376 118580671 -30202801 + AluSq SINE Alu 1 295 -18 3350 113 18 30 chr11 118580671 118581044 -30202428 + L1PA11 LINE L1 5321 5697 -477 814 71 0 0 chr11 118581143 118581241 -30202231 - L1PA11 LINE L1 -8 6166 6069 3611 93 9 0 chr11 118581241 118581700 -30201772 + L1PA11 LINE L1 5703 6166 -8 317 324 0 39 chr11 118581732 118581834 -30201638 + L2 LINE L2 3157 3254 -18 36 40 0 0 chr11 118582255 118582305 -30201167 + AT_rich Low_complexity Low_complexity 1 50 0 1822 87 4 24 chr11 118582390 118582642 -30200830 + AluY SINE Alu 35 281 -30 426 233 17 48 chr11 118582803 118582960 -30200512 + MER21B LTR ERV1 5 196 -409 * 668 233 25 41 chr11 118582934 118583217 -30200255 + MER21B LTR ERV1 98 428 -435 320 339 0 0 chr11 118583217 118583326 -30200146 + C-rich Low_complexity Low_complexity 4 112 0 783 214 175 40 chr11 118583329 118583683 -30199789 + MER21B LTR ERV1 400 856 -75 217 293 67 0 chr11 118583692 118583767 -30199705 - L2 LINE L2 -284 2988 2909 337 237 53 53 chr11 118584152 118584283 -30199189 + MIR SINE MIR 82 212 -50 711 78 0 0 chr11 118584579 118584682 -30198790 + (TG)n Simple_repeat Simple_repeat 1 103 0 430 200 40 20 chr11 118585008 118585108 -30198364 + L2 LINE L2 3207 3308 -5 1899 204 5 50 chr11 118585116 118585416 -30198056 - MLT1A1 LTR MaLR 0 365 84 1565 173 33 4 chr11 118585416 118585688 -30197784 - AluJb SINE Alu 0 312 33 1899 204 5 50 chr11 118585688 118585769 -30197703 - MLT1A1 LTR MaLR -281 84 1 1124 189 90 13 chr11 118585892 118586189 -30197283 - MLT1A1 LTR MaLR 0 365 13 3755 124 165 119 chr11 118586574 118586656 -30196816 + L1MC3 LINE L1 6715 6792 -993 1759 177 0 19 chr11 118586656 118586966 -30196506 + AluJo SINE Alu 1 304 -8 3755 124 165 119 chr11 118586966 118587261 -30196211 + L1MC3 LINE L1 6792 7072 -713 247 314 0 12 chr11 118587261 118587347 -30196125 + MLT1F1 LTR MaLR 40 124 -443 3755 124 165 119 chr11 118587347 118587490 -30195982 + L1MC3 LINE L1 7072 7207 -578 2419 84 3 0 chr11 118587490 118587800 -30195672 + AluY SINE Alu 1 311 0 3755 124 165 119 chr11 118587800 118588208 -30195264 + L1MC3 LINE L1 7207 7777 -8 565 234 40 50 chr11 118588227 118588428 -30195044 - L1ME LINE L1 -334 5787 5589 719 231 0 8 chr11 118588804 118588938 -30194534 + MER5A DNA MER1_type 3 135 -54 1434 179 15 15 chr11 118588979 118589247 -30194225 - L1MB8 LINE L1 -2 6176 5909 6918 63 7 7 chr11 118589247 118590249 -30193223 + L1PA8 LINE L1 5166 6167 -5 315 169 26 13 chr11 118590251 118590328 -30193144 + L1 LINE L1 3374 3451 -2695 1207 147 4 26 chr11 118590350 118590549 -30192923 - L1MB8 LINE L1 -273 5911 5716 2416 151 18 37 chr11 118590549 118590985 -30192487 - MSTC LTR MaLR 0 428 1 1207 147 4 26 chr11 118590985 118591017 -30192455 - L1MB8 LINE L1 -468 5716 5685 266 250 18 0 chr11 118591019 118591075 -30192397 + MER5A DNA MER1_type 132 188 -1 2185 95 4 0 chr11 118591255 118591529 -30191943 + AluSp SINE Alu 3 277 -36 327 167 89 56 chr11 118591652 118591742 -30191730 + L2 LINE L2 3221 3313 0 * 349 251 128 68 chr11 118591739 118591974 -30191498 - MIR SINE MIR 0 262 14 2251 99 0 3 chr11 118594436 118594728 -30188744 - AluSg SINE Alu -19 291 1 413 294 75 19 chr11 118594946 118595211 -30188261 + L1ME4a LINE L1 5547 5826 -295 1493 86 4 9 chr11 118595215 118595447 -30188025 + L1P4 LINE L1 5328 5558 -608 395 158 27 0 chr11 118595550 118595696 -30187776 + (TA)n Simple_repeat Simple_repeat 2 151 0 31 26 0 0 chr11 118596062 118596100 -30187372 + AT_rich Low_complexity Low_complexity 1 38 0 2344 89 0 3 chr11 118596142 118596444 -30187028 + AluSc SINE Alu 1 301 -8 256 253 83 70 chr11 118596898 118597139 -30186333 - MLT1J2 LTR MaLR -147 303 60 206 309 124 49 chr11 118597496 118597842 -30185630 + L2 LINE L2 2606 2977 -337 250 275 0 55 chr11 118598487 118598578 -30184894 - L2 LINE L2 -3 3269 3184 390 267 11 17 chr11 118598836 118598986 -30184486 - MIR SINE MIR 0 262 6 1527 214 57 46 chr11 118599405 118599862 -30183610 + MLT1C LTR MaLR 6 467 0 2254 112 0 3 chr11 118599911 118600207 -30183265 - AluSx SINE Alu -17 295 1 630 287 87 0 chr11 118600276 118600471 -30183001 + MIR SINE MIR 14 225 -37 1488 266 65 26 chr11 118601241 118601775 -30181697 + MLT1H1 LTR MaLR 1 555 0 19172 164 33 11 chr11 118602024 118603284 -30180188 - L1M1 LINE L1 -706 7018 5788 2171 132 3 0 chr11 118603284 118603580 -30179892 - AluSq SINE Alu -16 297 1 19172 164 33 11 chr11 118603580 118605741 -30177731 - L1M1 LINE L1 -1936 5788 3678 805 68 8 8 chr11 118605741 118605859 -30177613 + (TTTC)n Simple_repeat Simple_repeat 2 119 0 19172 164 33 11 chr11 118605859 118608977 -30174495 - L1M1 LINE L1 -4046 3678 320 2491 64 0 0 chr11 118609788 118610085 -30173387 - AluY SINE Alu -14 297 1 250 233 41 14 chr11 118610777 118610850 -30172622 + CT-rich Low_complexity Low_complexity 3 77 0 3720 98 30 48 chr11 118612311 118612920 -30170552 - MER4A LTR ERV1 0 600 3 1277 271 96 21 chr11 118613563 118614526 -30168946 + L1ME LINE L1 278 1307 -4773 2872 156 63 90 chr11 118614526 118615425 -30168047 + Charlie1 DNA MER1_type 1886 2760 -1 788 211 6 13 chr11 118616328 118616484 -30166988 - AluJb SINE Alu -25 287 133 874 177 0 0 chr11 118616676 118616817 -30166655 - FAM SINE Alu -44 141 1 234 0 0 0 chr11 118617159 118617185 -30166287 + (ATG)n Simple_repeat Simple_repeat 1 26 0 202 250 0 0 chr11 118617526 118617570 -30165902 + T-rich Low_complexity Low_complexity 1 44 0 833 153 0 0 chr11 118617758 118617882 -30165590 + FLAM_C SINE Alu 1 124 -19 27 0 0 0 chr11 118617883 118617910 -30165562 + AT_rich Low_complexity Low_complexity 1 27 0 181 389 0 0 chr11 118619770 118619860 -30163612 - MIR SINE MIR -107 155 66 632 208 213 16 chr11 118620006 118620189 -30163283 - MER20 DNA MER1_type 0 219 1 256 276 0 0 chr11 118620301 118620359 -30163113 - MER117 DNA MER1_type -139 58 1 2169 84 4 0 chr11 118620931 118621206 -30162266 + AluY SINE Alu 1 276 -35 2460 70 0 3 chr11 118621217 118621519 -30161953 + AluSc SINE Alu 1 301 -8 258 214 20 10 chr11 118621519 118621606 -30161866 + GA-rich Low_complexity Low_complexity 10 100 0 21 0 0 0 chr11 118622636 118622657 -30160815 + AT_rich Low_complexity Low_complexity 1 21 0 340 407 40 6 chr11 118622778 118622955 -30160517 - L2 LINE L2 0 3272 3090 25 0 0 0 chr11 118623411 118623436 -30160036 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr11 118625388 118625409 -30158063 + AT_rich Low_complexity Low_complexity 1 21 0 2212 106 3 7 chr11 118626889 118627192 -30156280 - AluSx SINE Alu -10 302 1 455 291 97 12 chr11 118627820 118627985 -30155487 + MIR SINE MIR 14 192 -70 213 284 132 32 chr11 118628403 118628593 -30154879 - L2 LINE L2 -71 3242 3034 4651 149 33 5 chr11 118629115 118629942 -30153530 - L1MC2 LINE L1 -32 6312 5463 242 338 52 0 chr11 118630271 118630348 -30153124 - L3 LINE CR1 -1163 414 334 536 261 120 5 chr11 118630455 118630639 -30152833 - MER58A DNA MER1_type -15 209 5 605 181 86 9 chr11 118630743 118630859 -30152613 + FLAM_A SINE Alu 1 125 -8 1416 206 120 42 chr11 118631399 118631831 -30151641 - MER31B LTR ERV1 0 466 1 304 238 123 143 chr11 118632289 118632533 -30150939 - L2 LINE L2 0 3272 3034 611 305 133 24 chr11 118632595 118633015 -30150457 - L2 LINE L2 -801 2513 2048 216 321 147 45 chr11 118633559 118633783 -30149689 - L2 LINE L2 -219 3053 2807 654 270 86 0 chr11 118635042 118635309 -30148163 - L1ME4a LINE L1 -294 5827 5538 21 0 0 0 chr11 118637367 118637388 -30146084 + AT_rich Low_complexity Low_complexity 1 21 0 264 230 222 8 chr11 118637443 118637569 -30145903 - MIR SINE MIR -10 252 100 341 277 223 14 chr11 118637692 118637840 -30145632 + MIR SINE MIR 45 223 -39 226 371 69 0 chr11 118638352 118638468 -30145004 + MIR SINE MIR 114 237 -25 2371 92 0 3 chr11 118640055 118640360 -30143112 - AluSq SINE Alu -9 304 1 1873 162 3 0 chr11 118640932 118641228 -30142244 + AluJo SINE Alu 4 300 -12 229 254 30 0 chr11 118641411 118641478 -30141994 + MLT1K LTR MaLR 520 588 0 623 294 147 25 chr11 118641651 118642052 -30141420 + MLT1K LTR MaLR 132 581 -7 332 244 218 41 chr11 118642223 118642494 -30140978 + MLT1I LTR MaLR 91 409 0 242 181 56 69 chr11 118642532 118642604 -30140868 - L2 LINE L2 -2 3311 3241 193 243 0 0 chr11 118643771 118643808 -30139664 - MER5A DNA MER1_type 0 189 153 740 288 131 4 chr11 118644123 118644320 -30139152 + L2 LINE L2 1820 2063 -1251 201 39 0 0 chr11 118644320 118644346 -30139126 + (TC)n Simple_repeat Simple_repeat 2 27 0 740 288 131 4 chr11 118644346 118644422 -30139050 + L2 LINE L2 2063 2128 -1186 5132 102 11 6 chr11 118644426 118645125 -30138347 - HSMAR1 DNA Mariner -3 1284 582 3282 87 58 0 chr11 118645173 118645624 -30137848 - HSMAR1 DNA Mariner -808 479 3 1933 220 93 85 chr11 118645626 118646245 -30137227 + L2 LINE L2 2166 2793 -521 4385 169 31 6 chr11 118646245 118646960 -30136512 + MER44D DNA MER2_type 1 605 0 1933 220 93 85 chr11 118646960 118647072 -30136400 + L2 LINE L2 2793 2903 -411 2094 134 10 0 chr11 118647085 118647266 -30136206 - AluSq SINE Alu 0 313 135 405 0 0 0 chr11 118647266 118647311 -30136161 + (TG)n Simple_repeat Simple_repeat 2 46 0 12098 74 18 13 chr11 118647311 118649671 -30133801 - L1PA7 LINE L1 -11 6143 3774 2094 134 10 0 chr11 118649671 118649794 -30133678 - AluSq SINE Alu -177 136 5 230 294 101 0 chr11 118649854 118649973 -30133499 + L2 LINE L2 3019 3149 -164 962 132 58 94 chr11 118650009 118650200 -30133272 + MSTB LTR MaLR 182 397 -29 752 179 8 22 chr11 118650201 118650335 -30133137 - AluJo SINE Alu -176 136 5 186 284 179 0 chr11 118650810 118650877 -30132595 + L2 LINE L2 3230 3308 -5 185 189 4 0 chr11 118651165 118651198 -30132274 + MIR SINE MIR 77 140 -68 3202 145 69 7 chr11 118651388 118651940 -30131532 - L1MB7 LINE L1 -1 6183 5598 189 0 0 0 chr11 118652014 118652035 -30131437 + (TG)n Simple_repeat Simple_repeat 2 22 0 1003 205 23 0 chr11 118652212 118652427 -30131045 - MER63 DNA MER1_type -841 220 1 21 0 0 0 chr11 118654017 118654038 -30129434 + AT_rich Low_complexity Low_complexity 1 21 0 1727 163 0 14 chr11 118654225 118654520 -30128952 + AluJo SINE Alu 22 312 0 1954 141 0 10 chr11 118654963 118655260 -30128212 - AluSg1 SINE Alu -15 294 1 833 129 0 36 chr11 118655833 118655972 -30127500 - FLAM_C SINE Alu -4 139 6 283 187 275 33 chr11 118656528 118656619 -30126853 - MLT1J1 LTR MaLR -53 393 281 2489 164 76 2 chr11 118656858 118657291 -30126181 - MLT1C LTR MaLR 0 467 3 320 304 118 0 chr11 118657633 118657735 -30125737 + L2 LINE L2 3136 3249 -23 204 354 31 0 chr11 118658210 118658275 -30125197 - L2 LINE L2 -6 3266 3200 556 286 6 6 chr11 118659148 118659319 -30124153 + MIR SINE MIR 56 226 -36 387 0 0 0 chr11 118659347 118659390 -30124082 + (TTA)n Simple_repeat Simple_repeat 2 44 0 4238 57 25 6 chr11 118659396 118659909 -30123563 - L1PA8 LINE L1 -1 6171 5649 2995 39 39 0 chr11 118659910 118660269 -30123203 - L1P3 LINE L1 -353 5819 5447 609 266 57 72 chr11 118660850 118661113 -30122359 + MLT1J2 LTR MaLR 6 264 -186 226 290 14 0 chr11 118661177 118661246 -30122226 + MLT1J2 LTR MaLR 367 436 -14 2453 120 36 22 chr11 118661263 118661622 -30121850 + THE1B LTR MaLR 1 364 0 434 300 150 26 chr11 118662075 118662308 -30121164 - MIR SINE MIR 0 262 1 369 259 88 47 chr11 118663284 118663454 -30120018 - MER5B DNA MER1_type 0 178 2 494 276 123 30 chr11 118666153 118666454 -30117018 + HAL1 LINE L1 1287 1615 -892 254 89 0 54 chr11 118666457 118666513 -30116959 + (A)n Simple_repeat Simple_repeat 1 53 0 385 294 73 71 chr11 118666819 118667435 -30116037 + L1ME LINE L1 3548 4164 -1982 22 0 0 0 chr11 118667857 118667879 -30115593 + AT_rich Low_complexity Low_complexity 1 22 0 1654 109 30 15 chr11 118667882 118668148 -30115324 - L1MA5 LINE L1 -3 6297 6028 268 278 75 51 chr11 118668179 118668443 -30115029 + L1ME LINE L1 4692 4969 -1177 462 304 48 12 chr11 118668618 118668868 -30114604 + L1ME LINE L1 5259 5517 -725 2918 82 0 0 chr11 118668933 118669020 -30114452 - L1PA8A LINE L1 -29 6102 6016 473 249 49 95 chr11 118669020 118669369 -30114103 - L1MB7 LINE L1 -176 6008 5676 358 291 55 0 chr11 118669311 118669438 -30114034 + L1ME LINE L1 5506 5639 -482 * 2237 158 19 11 chr11 118669445 118669807 -30113665 + MLT1A1 LTR MaLR 1 365 0 1638 201 112 34 chr11 118669850 118670288 -30113184 + MLT2B1 LTR ERVL 1 472 -48 238 263 0 42 chr11 118670354 118670449 -30113023 + L1ME LINE L1 5729 5819 -302 185 132 26 0 chr11 118670600 118670638 -30112834 + (TA)n Simple_repeat Simple_repeat 2 40 0 23 92 0 0 chr11 118670795 118670860 -30112612 + AT_rich Low_complexity Low_complexity 1 65 0 384 326 92 33 chr11 118673292 118673476 -30109996 - MIR3 SINE MIR -10 198 4 2718 97 13 20 chr11 118673631 118673687 -30109785 - L1MA2 LINE L1 0 6304 6249 2542 58 0 0 chr11 118673687 118673982 -30109490 - AluY SINE Alu -16 295 1 2718 97 13 20 chr11 118673982 118674317 -30109155 - L1MA2 LINE L1 -55 6249 5916 448 303 95 19 chr11 118674889 118675100 -30108372 + MIR SINE MIR 21 247 -15 204 167 42 0 chr11 118676101 118676149 -30107323 + L2 LINE L2 3264 3313 0 2191 125 0 0 chr11 118679553 118679858 -30103614 - AluY SINE Alu -6 305 1 2176 123 0 3 chr11 118680247 118680555 -30102917 + AluSx SINE Alu 1 307 -5 210 105 0 0 chr11 118680560 118680598 -30102874 + (A)n Simple_repeat Simple_repeat 1 38 0 299 292 27 26 chr11 118681145 118681267 -30102205 - MIR SINE MIR -81 127 4 190 224 52 17 chr11 118681429 118681487 -30101985 + MIR SINE MIR 82 141 -67 537 302 22 22 chr11 118681716 118681895 -30101577 - MIR SINE MIR -79 183 5 230 287 188 77 chr11 118682197 118682458 -30101014 + L2 LINE L2 2901 3190 -82 2005 159 7 0 chr11 118684637 118684945 -30098527 - AluSx SINE Alu -2 310 1 1887 73 31 19 chr11 118685070 118685331 -30098141 + MLT2A1 LTR ERVL 1 264 -180 1202 233 108 42 chr11 118685473 118685906 -30097566 + L1ME3A LINE L1 5699 6160 -10 1321 108 0 26 chr11 118685906 118686100 -30097372 + AluSg/x SINE Alu 66 254 -56 1532 201 0 18 chr11 118686139 118686423 -30097049 - AluJo SINE Alu -33 279 1 221 299 61 75 chr11 118688060 118688207 -30095265 + MIR SINE MIR 51 195 -67 1715 134 58 11 chr11 118688583 118688858 -30094614 - AluJb SINE Alu -23 289 2 189 388 0 0 chr11 118689309 118689389 -30094083 + MIR SINE MIR 30 109 -99 194 269 231 9 chr11 118689838 118689946 -30093526 - L2 LINE L2 0 3313 3182 305 289 97 79 chr11 118690033 118690261 -30093211 - MIR SINE MIR 0 262 31 211 273 191 48 chr11 118690463 118690694 -30092778 - L2 LINE L2 -604 2710 2447 368 261 229 6 chr11 118690764 118690921 -30092551 - MIR SINE MIR -2 260 69 220 294 29 0 chr11 118692295 118692363 -30091109 - MIR SINE MIR -82 180 111 509 260 61 15 chr11 118692484 118692680 -30090792 + MER112 DNA MER1_type 17 221 -39 203 324 0 46 chr11 118692931 118693039 -30090433 - MIR SINE MIR -56 206 104 204 67 0 0 chr11 118693294 118693324 -30090148 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 431 256 43 8 chr11 118693945 118694062 -30089410 + L2 LINE L2 2418 2538 -776 772 193 66 5 chr11 118694064 118694261 -30089211 + L1MD3 LINE L1 7786 7994 -1 1029 314 118 42 chr11 118694261 118694986 -30088486 + L2 LINE L2 2534 3312 -1 226 265 217 0 chr11 118695333 118695416 -30088056 + MER94 DNA DNA 34 134 0 2088 102 7 3 chr11 118695746 118696040 -30087432 + AluSp SINE Alu 1 295 -18 240 311 0 22 chr11 118696913 118697003 -30086469 + CT-rich Low_complexity Low_complexity 3 90 0 248 283 150 53 chr11 118698347 118698534 -30084938 + L3 LINE CR1 1372 1576 -1 603 176 8 16 chr11 118698627 118698752 -30084720 - FLAM_C SINE Alu 0 143 20 525 253 210 0 chr11 118698973 118699135 -30084337 + MIR SINE MIR 12 207 -55 233 292 11 27 chr11 118700409 118700500 -30082972 - MIR SINE MIR -72 136 51 253 255 0 94 chr11 118700528 118700634 -30082838 + L3 LINE CR1 1145 1240 -337 * 551 289 55 10 chr11 118700629 118700830 -30082642 + MIR SINE MIR 23 232 -30 24 32 0 0 chr11 118702627 118702658 -30080814 + AT_rich Low_complexity Low_complexity 1 31 0 2205 88 10 3 chr11 118703104 118703399 -30080073 - AluSc SINE Alu -12 297 1 1048 191 99 105 chr11 118704143 118704535 -30078937 - MLT1B LTR MaLR 0 390 1 1995 151 64 3 chr11 118705578 118705922 -30077550 + MER47A DNA MER2_type 2 366 0 25 0 0 0 chr11 118705992 118706017 -30077455 + AT_rich Low_complexity Low_complexity 1 25 0 254 167 0 106 chr11 118706949 118707015 -30076457 + MIR SINE MIR 85 143 -65 2559 305 39 17 chr11 118707443 118708397 -30075075 + L2 LINE L2 1479 2453 -861 314 255 21 32 chr11 118708395 118708489 -30074983 + L2 LINE L2 2898 2990 -323 * 2160 95 0 54 chr11 118709457 118709774 -30073698 - AluSx SINE Alu -12 300 1 387 282 215 0 chr11 118710304 118710499 -30072973 - MIR SINE MIR -6 256 20 1822 158 16 16 chr11 118711731 118712042 -30071430 + AluSx SINE Alu 1 311 -1 444 288 110 11 chr11 118712973 118713164 -30070308 + MIR SINE MIR 3 212 -50 2351 68 0 10 chr11 118715024 118715317 -30068155 - AluSp SINE Alu -23 290 1 2974 132 2 9 chr11 118715366 118715805 -30067667 - Charlie3 DNA MER1_type -2274 436 1 351 65 0 0 chr11 118715842 118715888 -30067584 + (CA)n Simple_repeat Simple_repeat 2 47 0 * 441 36 0 0 chr11 118715887 118715942 -30067530 + (TC)n Simple_repeat Simple_repeat 1 55 0 2181 153 14 0 chr11 118716096 118716461 -30067011 + L1PB4 LINE L1 5785 6154 -2 308 77 19 0 chr11 118716778 118716830 -30066642 + (CAAAA)n Simple_repeat Simple_repeat 2 54 0 709 273 20 40 chr11 118717160 118717413 -30066059 - MIR SINE MIR -7 255 8 1279 180 40 81 chr11 118717487 118717873 -30065599 + MLT1B LTR MaLR 3 345 -45 2105 109 3 0 chr11 118717873 118718200 -30065272 + AluSp SINE Alu 1 328 0 1279 180 40 81 chr11 118718200 118718243 -30065229 + MLT1B LTR MaLR 345 388 -2 333 82 0 0 chr11 118719009 118719058 -30064414 + (CA)n Simple_repeat Simple_repeat 2 50 0 246 32 0 0 chr11 118719057 118719088 -30064384 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 263 195 23 23 chr11 118720374 118720461 -30063011 + (TCTA)n Simple_repeat Simple_repeat 4 90 0 21 0 0 0 chr11 118720645 118720666 -30062806 + AT_rich Low_complexity Low_complexity 1 21 0 337 295 36 9 chr11 118720763 118720875 -30062597 - L1MC/D LINE L1 -2221 5587 5473 412 325 52 26 chr11 118720882 118721073 -30062399 + MIR SINE MIR 57 252 -10 190 186 23 23 chr11 118721073 118721116 -30062356 - L2 LINE L2 -1998 1316 1274 * 795 258 52 22 chr11 118721100 118721329 -30062143 + MIR SINE MIR 13 248 -14 26 0 0 0 chr11 118721345 118721371 -30062101 + AT_rich Low_complexity Low_complexity 1 26 0 313 235 72 51 chr11 118721379 118721622 -30061850 - L1MC/D LINE L1 -694 5427 5187 271 353 103 0 chr11 118722207 118722323 -30061149 + L2 LINE L2 3137 3264 -8 401 258 3 59 chr11 118722469 118722777 -30060695 + GA-rich Low_complexity Low_complexity 1 290 0 284 318 6 45 chr11 118722728 118722904 -30060568 + G-rich Low_complexity Low_complexity 5 173 0 * 1864 155 91 30 chr11 118724318 118724725 -30058747 + MSTB1 LTR MaLR 1 432 0 209 244 0 0 chr11 118725351 118725396 -30058076 + L2 LINE L2 3268 3312 -1 27 0 0 0 chr11 118725569 118725596 -30057876 + AT_rich Low_complexity Low_complexity 1 27 0 1597 130 42 103 chr11 118729097 118729475 -30053997 - LTR49-int LTR ERV1 -4605 1726 1372 561 104 52 0 chr11 118729605 118729701 -30053771 - LTR49-int LTR ERV1 -4939 1392 1292 310 240 0 40 chr11 118729769 118729844 -30053628 - tRNA-Glu-GAG tRNA tRNA 0 75 4 6107 158 35 67 chr11 118729845 118731094 -30052378 - LTR49-int LTR ERV1 -5122 1209 1 675 163 13 7 chr11 118731097 118731234 -30052238 - LTR49 LTR ERV1 -1 594 482 2055 161 101 25 chr11 118731901 118732084 -30051388 + MSTA LTR MaLR 1 169 -259 2091 119 10 3 chr11 118732084 118732377 -30051095 + AluSq SINE Alu 2 296 -17 2055 161 101 25 chr11 118732377 118732591 -30050881 + MSTA LTR MaLR 169 428 0 286 280 65 32 chr11 118732823 118732916 -30050556 - MIR SINE MIR -110 152 57 315 331 115 8 chr11 118732963 118733093 -30050379 + MER91A DNA MER1_type 1 144 -52 209 361 53 8 chr11 118733151 118733284 -30050188 + L2 LINE L2 2919 3057 -215 265 330 35 43 chr11 118733439 118733554 -30049918 + L2 LINE L2 3155 3268 -4 360 303 66 40 chr11 118734654 118734806 -30048666 + MIR SINE MIR 6 161 -101 24 0 0 0 chr11 118735158 118735182 -30048290 + AT_rich Low_complexity Low_complexity 1 24 0 590 134 71 1 chr11 118735198 118735329 -30048143 + L1M4 LINE L1 5548 5687 -491 1554 172 31 19 chr11 118735338 118735657 -30047815 - L1MB7 LINE L1 -50 6134 5812 1549 161 98 16 chr11 118735665 118735981 -30047491 - MER2 DNA MER2_type 0 344 3 246 154 0 0 chr11 118735987 118736026 -30047446 - MER2 DNA MER2_type -303 42 4 920 199 37 5 chr11 118736137 118736353 -30047119 - L1MB7 LINE L1 -397 5781 5559 665 200 196 30 chr11 118737794 118738059 -30045413 - L1MC3 LINE L1 -1629 6156 5848 1886 115 232 6 chr11 118738060 118738409 -30045063 - MSTA LTR MaLR 0 428 1 265 273 105 44 chr11 118738785 118738944 -30044528 - MIR SINE MIR -57 205 37 197 313 0 0 chr11 118739308 118739356 -30044116 + L2 LINE L2 3221 3268 -4 1706 117 0 0 chr11 118739671 118739901 -30043571 - AluSg/x SINE Alu -9 303 74 23 0 0 0 chr11 118740555 118740578 -30042894 + AT_rich Low_complexity Low_complexity 1 23 0 297 308 116 11 chr11 118792178 118792316 -29991156 + MIR SINE MIR 13 163 -45 690 243 164 75 chr11 118792830 118793258 -29990214 - MLT1J LTR MaLR -45 466 1 413 271 11 158 chr11 118793258 118793541 -29989931 + MER102a DNA MER1_type 82 322 -8 308 347 103 28 chr11 118793569 118793782 -29989690 - MIR SINE MIR -11 251 23 1961 131 10 0 chr11 118793950 118794240 -29989232 - AluSx SINE Alu -19 293 1 189 0 0 0 chr11 118794702 118794723 -29988749 + (TTCA)n Simple_repeat Simple_repeat 2 22 0 225 314 89 16 chr11 118794724 118794848 -29988624 - L2 LINE L2 -13 3300 3168 190 267 163 12 chr11 118794918 118795004 -29988468 + MIR SINE MIR 89 187 -75 224 297 125 0 chr11 118795160 118795224 -29988248 - MIR SINE MIR -103 105 34 440 175 0 41 chr11 118795543 118795640 -29987832 - MIR SINE MIR -54 208 116 1810 138 13 46 chr11 118795640 118795944 -29987528 - AluSx SINE Alu -18 294 1 217 313 15 0 chr11 118797188 118797255 -29986217 - L2 LINE L2 -218 3054 2987 718 222 0 0 chr11 118797328 118797445 -29986027 + AluJo/FLAM SINE Alu 2 118 -194 1981 109 7 7 chr11 118797447 118797773 -29985699 - AluSq SINE Alu 0 326 1 249 108 0 0 chr11 118797783 118797820 -29985652 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 333 174 0 0 chr11 118797858 118797927 -29985545 + GA-rich Low_complexity Low_complexity 4 72 0 8101 25 0 0 chr11 118798827 118799903 -29983569 - L1PA4 LINE L1 0 6155 5082 2164 98 4 0 chr11 118799909 118800186 -29983286 - AluSp SINE Alu -20 293 16 310 257 140 7 chr11 118800481 118800617 -29982855 + MIR SINE MIR 70 223 -39 244 330 90 0 chr11 118800734 118800834 -29982638 + L2 LINE L2 3150 3258 -14 181 253 32 105 chr11 118800980 118801075 -29982397 + L2 LINE L2 3147 3234 -38 495 0 0 0 chr11 118801174 118801229 -29982243 + (TG)n Simple_repeat Simple_repeat 1 55 0 1176 129 57 0 chr11 118801667 118801860 -29981612 + L1PB1 LINE L1 5948 6151 0 2055 151 0 3 chr11 118802477 118802788 -29980684 - AluSq SINE Alu -2 311 2 338 270 67 0 chr11 118802862 118802951 -29980521 - MIR3 SINE MIR -27 181 87 307 335 55 28 chr11 118803622 118803804 -29979668 + L3b LINE CR1 1183 1369 -214 342 314 22 7 chr11 118803821 118803888 -29979584 - MLT1K LTR MaLR -2 586 521 2360 97 0 3 chr11 118803888 118804186 -29979286 - AluSx SINE Alu -14 298 2 342 314 22 7 chr11 118804186 118804255 -29979217 - MLT1K LTR MaLR -67 521 448 335 329 88 6 chr11 118804272 118804442 -29979030 - MIR SINE MIR -21 241 58 393 133 86 9 chr11 118804542 118804656 -29978816 - LTR50 LTR ERVL 0 795 401 3020 80 0 3 chr11 118804714 118805090 -29978382 + L1PA7 LINE L1 5765 6139 -15 339 152 291 4 chr11 118805101 118805248 -29978224 - LTR50 LTR ERVL -422 373 122 431 321 93 10 chr11 118805667 118805860 -29977612 + MIR SINE MIR 20 228 -34 195 42 0 0 chr11 118806478 118806502 -29976970 + (GA)n Simple_repeat Simple_repeat 1 24 0 645 157 9 0 chr11 118806591 118806699 -29976773 - MLT2B2 LTR ERVL 0 515 407 251 111 67 22 chr11 118806799 118806844 -29976628 - MLT2B3 LTR ERVL -507 47 1 333 268 37 0 chr11 118807880 118807962 -29975510 + MER21B LTR ERV1 12 96 -767 2284 107 0 0 chr11 118807977 118808266 -29975206 - AluSx SINE Alu -23 289 1 1750 271 95 24 chr11 118808313 118808932 -29974540 + MER21B LTR ERV1 98 760 -103 203 250 226 0 chr11 118809003 118809087 -29974385 + MIR SINE MIR 47 149 -113 568 232 58 47 chr11 118809462 118809523 -29973949 + MIR SINE MIR 1 60 -202 1426 208 18 91 chr11 118809523 118809917 -29973555 + MLT1A1 LTR MaLR 1 365 0 568 232 58 47 chr11 118809917 118810045 -29973427 + MIR SINE MIR 60 192 -70 350 250 60 0 chr11 118810874 118810958 -29972514 - MIR3 SINE MIR -52 156 68 215 293 173 0 chr11 118811589 118811664 -29971808 + MER91C DNA MER1_type 3 90 -50 956 223 10 36 chr11 118813043 118813236 -29970236 + MER5A DNA MER1_type 1 188 -1 352 202 45 22 chr11 118814181 118814270 -29969202 + MIR SINE MIR 96 186 -76 3364 106 0 4 chr11 118814707 118815178 -29968294 - L1PB1 LINE L1 -265 5886 5418 2205 105 34 0 chr11 118815203 118815499 -29967973 - AluSx SINE Alu -6 306 1 305 349 82 26 chr11 118815789 118815984 -29967488 - MLT1K LTR MaLR -380 208 3 988 242 105 2 chr11 118815988 118816413 -29967059 - L1ME LINE L1 -728 5505 5042 322 285 70 38 chr11 118816400 118816586 -29966886 - L1ME LINE L1 -2598 3617 3426 * 1832 206 3 3 chr11 118816654 118816984 -29966488 - MER58B DNA MER1_type -1 340 11 2057 266 82 11 chr11 118816991 118817808 -29965664 - L1ME LINE L1 -2819 3396 2522 3126 148 55 4 chr11 118817841 118818354 -29965118 + L1MB3 LINE L1 5631 6169 -14 2228 264 72 64 chr11 118818363 118819714 -29963758 - L1ME LINE L1 -4403 1993 631 610 158 10 1 chr11 118819784 118819902 -29963570 + L1MA6 LINE L1 6134 6250 -41 189 155 138 35 chr11 118820238 118820296 -29963176 - L2 LINE L2 -8 3264 3201 252 293 0 0 chr11 118820836 118820911 -29962561 + GA-rich Low_complexity Low_complexity 1 75 0 363 274 39 10 chr11 118821233 118821335 -29962137 + L2 LINE L2 3182 3286 -27 478 121 0 0 chr11 118821335 118821401 -29962071 + MSTA LTR MaLR 1 66 -362 2888 74 8 0 chr11 118821402 118821754 -29961718 - THE1A LTR MaLR 0 355 1 6974 102 11 10 chr11 118821754 118822718 -29960754 - THE1A-int LTR MaLR 0 1580 616 2374 87 0 3 chr11 118822705 118823028 -29960444 + L1P LINE L1 2283 2604 -3542 * 3649 64 4 0 chr11 118823128 118823594 -29959878 - THE1A-int LTR MaLR -1112 468 1 2836 90 3 0 chr11 118823594 118823948 -29959524 - THE1A LTR MaLR 0 355 1 1642 144 160 12 chr11 118823948 118824267 -29959205 + MSTA LTR MaLR 63 428 0 22 0 0 0 chr11 118824592 118824614 -29958858 + AT_rich Low_complexity Low_complexity 1 22 0 899 147 25 66 chr11 118825015 118825212 -29958260 - MER53 DNA DNA 0 189 1 2049 98 7 7 chr11 118826066 118826340 -29957132 - L1PA10 LINE L1 0 6168 5895 398 304 132 18 chr11 118826772 118826999 -29956473 - MIR SINE MIR -9 253 1 430 333 7 7 chr11 118827048 118827198 -29956274 - MIR3 SINE MIR -17 191 42 189 0 0 0 chr11 118827800 118827821 -29955651 + (T)n Simple_repeat Simple_repeat 1 21 0 448 250 0 0 chr11 118828271 118828351 -29955121 + tRNA-Ser-TCC tRNA tRNA 3 82 -3 197 250 263 12 chr11 118828596 118828676 -29954796 - L2 LINE L2 0 3272 3173 307 246 73 91 chr11 118829950 118830060 -29953412 + MIR SINE MIR 31 138 -70 533 269 181 35 chr11 118830310 118830681 -29952791 + L2 LINE L2 2316 2740 -574 673 305 73 9 chr11 118830920 118831153 -29952319 - MIR SINE MIR 0 262 15 2135 118 3 3 chr11 118833457 118833746 -29949726 + AluSg SINE Alu 1 289 -21 1170 132 11 0 chr11 118833746 118833920 -29949552 + AluSg/x SINE Alu 137 312 0 352 224 234 0 chr11 118834361 118834468 -29949004 - L2 LINE L2 0 3313 3182 2712 280 61 41 chr11 118835657 118836558 -29946914 + L1M4b LINE L1 11 929 -5930 2022 254 61 72 chr11 118837096 118838976 -29944496 + L1M4b LINE L1 1205 3203 -3935 354 224 26 0 chr11 118838990 118839066 -29944406 + L2 LINE L2 2703 2780 -534 499 198 314 32 chr11 118839114 118839362 -29944110 - HAL1 LINE L1 -863 1644 1327 378 0 0 0 chr11 118839362 118839404 -29944068 + (TG)n Simple_repeat Simple_repeat 1 42 0 2597 142 46 24 chr11 118840783 118841198 -29942274 - MSTA LTR MaLR -4 424 1 340 305 135 3 chr11 118841599 118841746 -29941726 + MIR SINE MIR 15 183 -25 741 307 107 26 chr11 118842035 118842305 -29941167 - L2 LINE L2 0 3272 2981 432 0 0 0 chr11 118842922 118842970 -29940502 + (TG)n Simple_repeat Simple_repeat 2 49 0 184 253 67 93 chr11 118843471 118843546 -29939926 - MIR SINE MIR -94 114 42 281 324 196 6 chr11 118843612 118843791 -29939681 - MIR SINE MIR -31 231 19 211 379 11 0 chr11 118846437 118846532 -29936940 - MIR SINE MIR -71 137 42 5385 43 0 1 chr11 118846738 118847425 -29936047 - L1PA3 LINE L1 0 6155 5497 263 253 23 23 chr11 118848087 118848174 -29935298 - L2 LINE L2 -298 2974 2888 212 376 82 0 chr11 118849749 118849834 -29933638 + MIR SINE MIR 43 134 -74 382 271 90 23 chr11 118850116 118850293 -29933179 + MLT1L LTR MaLR 427 615 0 285 237 34 0 chr11 118850295 118850354 -29933118 + MIR3 SINE MIR 131 191 -17 4957 86 4 57 chr11 118850627 118851438 -29932034 + L1PA13 LINE L1 5396 6163 0 240 364 93 8 chr11 118851701 118851819 -29931653 + MIR SINE MIR 16 143 -65 333 356 50 6 chr11 118852576 118852736 -29930736 + MIR SINE MIR 2 168 -94 204 380 101 23 chr11 118853427 118853556 -29929916 + L2 LINE L2 3041 3179 -93 3945 37 12 2 chr11 118853609 118854091 -29929381 + L1PA5 LINE L1 5665 6151 -3 259 298 55 50 chr11 118854546 118854727 -29928745 + L2 LINE L2 1356 1537 -1777 3664 148 23 11 chr11 118855019 118855679 -29927793 + L1MC1 LINE L1 5664 6331 -2 227 31 31 0 chr11 118855685 118855717 -29927755 + (CA)n Simple_repeat Simple_repeat 1 33 0 470 219 0 0 chr11 118856230 118856326 -29927146 - AluJo SINE Alu -14 298 203 * 745 174 53 0 chr11 118856322 118856454 -29927018 - AluJo SINE Alu -173 139 1 32 75 0 0 chr11 118856482 118856549 -29926923 + AT_rich Low_complexity Low_complexity 1 67 0 11653 179 24 15 chr11 118856665 118859024 -29924448 + L1 LINE L1 2221 4607 -1539 1975 118 27 24 chr11 118859024 118859320 -29924152 + AluSx SINE Alu 1 297 -15 11653 179 24 15 chr11 118859320 118859570 -29923902 + L1 LINE L1 4607 4853 -1293 41541 41 4 1 chr11 118859671 118864989 -29918483 - L1P LINE L1 -815 5331 3 6901 56 6 0 chr11 118865162 118866385 -29917087 - L1PA6 LINE L1 0 6154 4928 196 53 53 0 chr11 118866470 118866508 -29916964 + A-rich Low_complexity Low_complexity 4 43 0 443 290 23 8 chr11 118867195 118867326 -29916146 - MIR3 SINE MIR -43 165 33 1207 172 69 0 chr11 118867365 118867627 -29915845 - L1MA8 LINE L1 -5 6286 6007 6267 101 34 16 chr11 118867698 118868732 -29914740 - L1MA3 LINE L1 0 6305 5254 228 290 92 58 chr11 118870044 118870251 -29913221 - L2 LINE L2 -217 3055 2842 342 270 135 0 chr11 118870600 118870726 -29912746 + MIR3 SINE MIR 4 146 -62 451 262 82 59 chr11 118871178 118871387 -29912085 - MIR SINE MIR -37 225 3 255 343 93 9 chr11 118874106 118874214 -29909258 + L2 LINE L2 3007 3123 -149 507 295 81 19 chr11 118874229 118874762 -29908710 - L1ME3A LINE L1 -241 6323 5758 1044 94 0 19 chr11 118874963 118875122 -29908350 + MER4E LTR ERV1 592 747 -32 675 297 81 38 chr11 118875189 118875852 -29907620 - L1ME3A LINE L1 -1070 5470 4779 331 250 74 9 chr11 118875993 118876101 -29907371 - L2 LINE L2 0 3313 3199 229 221 122 38 chr11 118876800 118876931 -29906541 - L1ME3A LINE L1 -2191 4349 4208 1276 157 9 35 chr11 118876931 118877161 -29906311 - AluJo SINE Alu -18 294 71 813 167 0 8 chr11 118877171 118877303 -29906169 - AluJb SINE Alu -179 133 3 580 280 152 15 chr11 118877305 118877922 -29905550 - L1ME3A LINE L1 -2325 4215 3514 21 0 0 0 chr11 118877940 118877961 -29905511 + AT_rich Low_complexity Low_complexity 1 21 0 271 296 207 0 chr11 118878179 118878618 -29904854 - L1ME3A LINE L1 -3148 3392 2863 387 321 115 42 chr11 118878656 118878943 -29904529 - L1ME3A LINE L1 -3726 2814 2507 250 317 8 8 chr11 118879393 118879516 -29903956 - L1ME3A LINE L1 -4563 1977 1855 858 269 46 108 chr11 118879527 118880288 -29903184 - L1MEd LINE L1 -996 1494 685 216 0 0 0 chr11 118880292 118880316 -29903156 + (TG)n Simple_repeat Simple_repeat 1 24 0 220 267 0 0 chr11 118881596 118881671 -29901801 + T-rich Low_complexity Low_complexity 1 75 0 5223 132 26 42 chr11 118881675 118882014 -29901458 - L1PB1 LINE L1 -3 6864 6521 318 80 0 0 chr11 118882014 118882064 -29901408 + (TG)n Simple_repeat Simple_repeat 2 51 0 5223 132 26 42 chr11 118882064 118883393 -29900079 - L1PB1 LINE L1 -346 6521 5221 8976 124 54 20 chr11 118883493 118884910 -29898562 - L1PB1 LINE L1 -3410 3452 2085 266 107 27 0 chr11 118884910 118884986 -29898486 - AluY SINE Alu -21 280 246 8976 124 54 20 chr11 118884986 118886110 -29897362 - L1PB1 LINE L1 -4777 2085 636 1061 153 10 0 chr11 118886112 118886308 -29897164 - L1PB1 LINE L1 -6663 200 3 2240 84 3 0 chr11 118886324 118886631 -29896841 - AluSp SINE Alu 0 308 1 257 348 22 7 chr11 118886657 118886792 -29896680 - L1MEd LINE L1 -5453 666 530 28 0 0 0 chr11 118886930 118886958 -29896514 + AT_rich Low_complexity Low_complexity 1 28 0 1790 107 0 19 chr11 118887087 118887357 -29896115 - AluY SINE Alu -46 265 1 1252 209 94 7 chr11 118887385 118887801 -29895671 - Charlie4a DNA MER1_type -27 481 30 2384 73 0 6 chr11 118887959 118888272 -29895200 - AluY SINE Alu 0 311 1 253 352 109 0 chr11 118888414 118888542 -29894930 + L2 LINE L2 3172 3313 0 1653 185 76 34 chr11 118889772 118890154 -29893318 + MLT1C LTR MaLR 1 406 -61 4763 91 8 37 chr11 118890154 118890860 -29892612 - L1PA10 LINE L1 -1 6167 5482 1653 185 76 34 chr11 118890860 118890925 -29892547 + MLT1C LTR MaLR 406 467 0 29 28 0 0 chr11 118891090 118891126 -29892346 + AT_rich Low_complexity Low_complexity 1 36 0 330 67 0 0 chr11 118892679 118892724 -29890748 + (TTCA)n Simple_repeat Simple_repeat 4 48 0 402 280 33 118 chr11 118892733 118893065 -29890407 - L2 LINE L2 -37 3235 2932 202 239 0 0 chr11 118893449 118893495 -29889977 + L2 LINE L2 3226 3271 -1 587 260 72 17 chr11 118895089 118895270 -29888202 - MIR SINE MIR -59 203 13 398 321 10 53 chr11 118895395 118895604 -29887868 - MIR SINE MIR -45 217 18 21 0 0 0 chr11 118895629 118895650 -29887822 + AT_rich Low_complexity Low_complexity 1 21 0 1693 110 13 9 chr11 118895892 118896120 -29887352 + MER30 DNA MER1_type 1 229 -1 232 239 283 33 chr11 118897015 118897107 -29886365 - MER5A DNA MER1_type -3 186 72 2860 7 0 0 chr11 118897902 118898207 -29885265 - AluYa5 SINE Alu -6 305 1 787 117 90 0 chr11 118900136 118900247 -29883225 - 5S rRNA rRNA 0 121 1 2187 108 0 7 chr11 118900274 118900570 -29882902 + AluSx SINE Alu 1 294 -18 322 249 177 100 chr11 118900618 118900867 -29882605 - LTR16C LTR ERVL 0 491 224 24 53 0 0 chr11 118901605 118901643 -29881829 + AT_rich Low_complexity Low_complexity 1 38 0 4824 114 38 16 chr11 118901659 118902414 -29881058 - L1MA4 LINE L1 -6 6294 5523 546 249 127 32 chr11 118903141 118903362 -29880110 + LTR33 LTR ERVL 26 267 -254 447 216 11 0 chr11 118904622 118904710 -29878762 + MER5B DNA MER1_type 1 89 -89 25 0 0 0 chr11 118905853 118905878 -29877594 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr11 118906729 118906758 -29876714 + AT_rich Low_complexity Low_complexity 1 29 0 272 276 126 0 chr11 118907395 118907482 -29875990 + L2 LINE L2 3215 3312 -1 24 32 0 0 chr11 118907859 118907890 -29875582 + AT_rich Low_complexity Low_complexity 1 31 0 357 210 6 100 chr11 118907937 118908003 -29875469 - L1MDb LINE L1 -5069 1001 930 2200 93 0 32 chr11 118908003 118908314 -29875158 - AluSg SINE Alu -9 301 1 357 210 6 100 chr11 118908314 118908408 -29875064 - L1MDb LINE L1 -5140 930 854 420 244 60 76 chr11 118908506 118908822 -29874650 - L1MDb LINE L1 -5205 865 555 623 284 52 5 chr11 118908889 118909083 -29874389 + MER3 DNA MER1_type 2 204 -5 265 330 150 35 chr11 118909500 118909673 -29873799 + L2 LINE L2 3045 3237 -35 1335 191 30 23 chr11 118909948 118910210 -29873262 - AluJo SINE Alu -6 306 43 600 318 52 9 chr11 118910283 118910516 -29872956 - MIR SINE MIR -1 261 19 310 233 67 0 chr11 118910799 118910889 -29872583 - MER69 DNA AcHobo -248 2278 2183 1101 235 105 4 chr11 118910908 118911078 -29872394 - MER69 DNA AcHobo -920 306 155 1649 202 91 14 chr11 118911078 118911440 -29872032 + MLT1B LTR MaLR 1 390 0 1101 235 105 4 chr11 118911440 118911546 -29871926 - MER69 DNA AcHobo -1071 155 2 306 164 0 0 chr11 118911592 118911647 -29871825 + GA-rich Low_complexity Low_complexity 3 57 0 412 253 30 0 chr11 118911973 118912072 -29871400 + MLT1G1 LTR MaLR 2 103 -492 223 316 94 8 chr11 118912285 118912402 -29871070 - L2 LINE L2 -190 3123 2997 1203 213 38 113 chr11 118912402 118912801 -29870671 + MLT1A2 LTR MaLR 1 369 -5 224 208 69 42 chr11 118912808 118912880 -29870592 - L2 LINE L2 -325 2988 2915 295 273 190 8 chr11 118913365 118913486 -29869986 + MIR SINE MIR 1 143 -119 32 0 0 0 chr11 118913997 118914029 -29869443 + AT_rich Low_complexity Low_complexity 1 32 0 195 310 138 29 chr11 118914168 118914342 -29869130 - MIR SINE MIR -12 250 58 5440 92 12 7 chr11 118914381 118915123 -29868349 - L1MA2 LINE L1 0 7723 6978 2091 86 25 7 chr11 118915123 118915402 -29868070 + MLT2A1 LTR ERVL 4 287 -157 14366 176 47 35 chr11 118915502 118918810 -29864662 - L1MA2 LINE L1 -743 6822 3590 1016 67 36 12 chr11 118918810 118918975 -29864497 + (TTTC)n Simple_repeat Simple_repeat 4 172 0 14366 176 47 35 chr11 118918975 118919306 -29864166 - L1MA2 LINE L1 -3975 3590 3264 5038 196 29 13 chr11 118919324 118920296 -29863176 - L1MA2 LINE L1 -6558 1007 21 180 308 39 0 chr11 118920564 118920616 -29862856 - MIR SINE MIR -132 130 77 4906 78 5 5 chr11 118922838 118923465 -29860007 + SVA Other Other 754 1380 -6 3003 142 2 9 chr11 118924352 118924781 -29858691 - MSTB LTR MaLR 0 426 1 500 284 129 10 chr11 118925429 118925630 -29857842 - MIR SINE MIR -9 253 29 207 0 0 0 chr11 118926538 118926561 -29856911 + (A)n Simple_repeat Simple_repeat 1 23 0 207 208 21 0 chr11 118926891 118926939 -29856533 - L2 LINE L2 0 3313 3265 517 253 162 0 chr11 118927207 118927405 -29856067 + L1ME LINE L1 5543 5772 -349 404 171 65 12 chr11 118927541 118927711 -29855761 + (TA)n Simple_repeat Simple_repeat 2 180 0 45 45 0 0 chr11 118927789 118927855 -29855617 + AT_rich Low_complexity Low_complexity 1 66 0 259 272 104 24 chr11 118928653 118928778 -29854694 + MIR SINE MIR 110 244 -18 1553 286 71 42 chr11 118930582 118931397 -29852075 + L2 LINE L2 2415 3256 -57 2104 115 0 7 chr11 118931402 118931689 -29851783 + AluSc SINE Alu 6 290 -19 1747 110 48 15 chr11 118932322 118932595 -29850877 - L1MA4A LINE L1 -7 6296 6015 2229 125 3 0 chr11 118932656 118932960 -29850512 + AluSx SINE Alu 1 305 -7 214 337 107 65 chr11 118935101 118935410 -29848062 - L2 LINE L2 -1 3271 2950 380 291 12 84 chr11 118936634 118936876 -29846596 + MIR SINE MIR 2 228 -34 194 129 35 176 chr11 118937502 118937587 -29845885 - MIR SINE MIR -183 79 7 2033 140 6 10 chr11 118937644 118937958 -29845514 + AluSq SINE Alu 1 313 0 213 39 0 0 chr11 118939011 118939037 -29844435 + (T)n Simple_repeat Simple_repeat 1 26 0 44093 30 21 1 chr11 118939067 118945099 -29838373 - L1HS LINE L1 0 6155 1 1413 194 102 71 chr11 118945715 118946249 -29837223 - MER66A LTR ERV1 -2 476 97 26 0 0 0 chr11 118946444 118946470 -29837002 + AT_rich Low_complexity Low_complexity 1 26 0 328 278 95 60 chr11 118946471 118946606 -29836866 - L1MC5 LINE L1 -49 7912 7783 2091 111 4 0 chr11 118946606 118946913 -29836559 - AluY SINE Alu 0 308 1 328 278 95 60 chr11 118946913 118947261 -29836211 - L1MC5 LINE L1 -178 7783 7411 442 312 99 20 chr11 118947322 118947768 -29835704 - L1M4 LINE L1 -1637 4509 4029 6816 59 8 2 chr11 118947873 118949110 -29834362 - L1PA6 LINE L1 -13 6141 4894 7163 111 6 16 chr11 118949148 118950216 -29833256 - MER11C LTR ERVK -14 1057 1 34258 79 21 9 chr11 118950216 118955035 -29828437 - L1PA6 LINE L1 -1247 4899 27 332 273 83 34 chr11 118955043 118955307 -29828165 - L1M4 LINE L1 -2208 3938 3662 1466 166 112 0 chr11 118955596 118955891 -29827581 - MER7A DNA MER2_type -20 326 1 23 33 0 0 chr11 118955911 118955941 -29827531 + AT_rich Low_complexity Low_complexity 1 30 0 615 196 6 12 chr11 118956069 118956220 -29827252 + CT-rich Low_complexity Low_complexity 3 154 -20 1862 70 0 27 chr11 118956220 118956479 -29826993 - L1PA7 LINE L1 -15 6139 5888 615 196 6 12 chr11 118956479 118956500 -29826972 + CT-rich Low_complexity Low_complexity 154 174 0 539 222 11 31 chr11 118956516 118956795 -29826677 + CT-rich Low_complexity Low_complexity 1 273 0 289 281 56 60 chr11 118956838 118957105 -29826367 - L1M4 LINE L1 -3091 3055 2790 468 248 64 59 chr11 118957109 118957311 -29826161 - L1M4 LINE L1 -3318 2828 2626 339 65 0 0 chr11 118957786 118957832 -29825640 + (CA)n Simple_repeat Simple_repeat 2 47 0 569 314 93 38 chr11 118957867 118958449 -29825023 - HAL1b LINE L1 -519 829 216 2377 65 0 45 chr11 118960003 118960312 -29823160 - AluY SINE Alu -16 295 1 655 344 181 34 chr11 118960406 118961186 -29822286 + L2 LINE L2 1570 2234 -1038 1966 146 14 0 chr11 118961186 118961480 -29821992 - AluSx SINE Alu -14 298 1 655 344 181 34 chr11 118961480 118961762 -29821710 + L2 LINE L2 2234 2473 -799 2511 56 0 40 chr11 118961762 118962086 -29821386 - AluY SINE Alu 0 311 1 655 344 181 34 chr11 118962086 118962320 -29821152 + L2 LINE L2 2473 3064 -208 1910 143 3 7 chr11 118963030 118963324 -29820148 + AluSx SINE Alu 6 298 -14 345 307 98 0 chr11 118964762 118964925 -29818547 - L1MDa LINE L1 -1081 5459 5281 781 303 105 21 chr11 118965554 118966044 -29817428 - L1MDa LINE L1 -1299 5241 4693 2188 129 0 0 chr11 118966044 118966354 -29817118 - AluSg SINE Alu 0 310 1 781 303 105 21 chr11 118966354 118966443 -29817029 - L1MDa LINE L1 -1847 4693 4613 294 266 174 30 chr11 118966483 118966758 -29816714 - L1MDa LINE L1 -2157 4383 4067 22 35 0 0 chr11 118966821 118966850 -29816622 + AT_rich Low_complexity Low_complexity 1 29 0 643 276 22 22 chr11 118967054 118967239 -29816233 + MLT1J1 LTR MaLR 1 185 -261 237 246 72 0 chr11 118967240 118967309 -29816163 - L2 LINE L2 -31 3282 3209 5620 62 0 0 chr11 118967322 118968028 -29815444 - L1PA7 LINE L1 -1 6153 5448 3922 189 42 14 chr11 118970100 118970971 -29812501 - L1MD2 LINE L1 -4 6355 5460 6229 188 36 15 chr11 118971027 118971549 -29811923 - L1MA9 LINE L1 0 6312 5802 276 30 0 0 chr11 118971549 118971582 -29811890 + (TG)n Simple_repeat Simple_repeat 1 33 0 6229 188 36 15 chr11 118971582 118973327 -29810145 - L1MA9 LINE L1 -510 5802 4000 4483 202 31 4 chr11 118973334 118974369 -29809103 + L1MA9 LINE L1 2915 3977 -2169 1485 215 32 7 chr11 118974388 118974798 -29808674 - L1MDa LINE L1 -2958 3582 3163 180 82 41 20 chr11 118974900 118974949 -29808523 + (TA)n Simple_repeat Simple_repeat 1 50 0 1054 144 0 0 chr11 118974949 118975102 -29808370 + MSTB LTR MaLR 272 424 -2 4238 178 25 23 chr11 118975102 118975957 -29807515 + L1MA10 LINE L1 5447 6302 -32 305 268 21 21 chr11 118976230 118976327 -29807145 + GA-rich Low_complexity Low_complexity 3 99 0 1193 267 116 19 chr11 118976362 118977035 -29806437 + L1M4 LINE L1 3727 4462 -1684 4576 92 6 6 chr11 118977149 118977790 -29805682 + L1PA8 LINE L1 5529 6169 -3 501 185 143 0 chr11 118977790 118977909 -29805563 + L1MDb LINE L1 1172 1307 -5102 1420 169 9 0 chr11 118977910 118978135 -29805337 + AluJb SINE Alu 77 303 -9 2468 219 92 44 chr11 118978138 118979009 -29804463 + L1MDb LINE L1 1291 2203 -4203 535 156 11 48 chr11 118979043 118979229 -29804243 + (TA)n Simple_repeat Simple_repeat 1 179 0 271 137 20 0 chr11 118979242 118979293 -29804179 - L1MDa LINE L1 -4167 2373 2322 182 188 0 21 chr11 118979342 118979390 -29804082 + (TA)n Simple_repeat Simple_repeat 1 47 0 1315 183 43 76 chr11 118979403 118979995 -29803477 + L1MDb LINE L1 2189 2755 -3651 26884 146 9 17 chr11 118980111 118985146 -29798326 - L1PA8A LINE L1 -680 5766 756 1518 243 82 50 chr11 118985160 118985757 -29797715 + L1ME3 LINE L1 5546 6161 -1 328 313 45 76 chr11 118986006 118986204 -29797268 + L2 LINE L2 14 205 -3109 432 216 99 9 chr11 118986236 118986347 -29797125 + L2 LINE L2 3127 3247 -66 396 312 126 22 chr11 118987019 118987250 -29796222 + MIR SINE MIR 8 262 0 2317 80 0 25 chr11 118987995 118988309 -29795163 - AluY SINE Alu -5 306 1 216 0 0 0 chr11 118988744 118988768 -29794704 + (TA)n Simple_repeat Simple_repeat 2 25 0 257 309 158 36 chr11 118988780 118988919 -29794553 - L3 LINE CR1 -6 1571 1416 474 219 42 0 chr11 118988929 118989048 -29794424 - L1ME2 LINE L1 0 6164 6041 430 316 25 13 chr11 118989052 118989210 -29794262 - L3 LINE CR1 -166 1411 1252 391 319 67 1 chr11 118989303 118989491 -29793981 + MIR SINE MIR 35 237 -25 308 330 40 29 chr11 118989606 118989779 -29793693 + MIR SINE MIR 3 177 -85 995 264 40 0 chr11 118990469 118990768 -29792704 + L1ME3A LINE L1 4020 4330 -1816 5492 106 30 16 chr11 118990772 118991632 -29791840 - Tigger3b DNA MER2_type -20 1211 340 517 106 10 106 chr11 118991633 118991832 -29791640 + (TA)n Simple_repeat Simple_repeat 1 180 0 448 126 33 60 chr11 118991802 118991985 -29791487 + (TATATG)n Simple_repeat Simple_repeat 2 179 0 * 2015 257 126 13 chr11 118992097 118992869 -29790603 + L1ME3A LINE L1 5286 6146 -24 257 278 35 52 chr11 118993280 118993395 -29790077 - L1ME3A LINE L1 -53 6117 6005 264 59 0 0 chr11 118993415 118993449 -29790023 + (TA)n Simple_repeat Simple_repeat 2 35 0 23 54 0 0 chr11 118993463 118993500 -29789972 + AT_rich Low_complexity Low_complexity 1 37 0 6896 178 36 36 chr11 118993668 118996121 -29787351 - L1MA4A LINE L1 -59 6244 3793 2500 106 22 5 chr11 118996121 118996489 -29786983 - THE1C LTR MaLR -1 374 1 6896 178 36 36 chr11 118996489 118996551 -29786921 - L1MA4A LINE L1 -2510 3793 3733 1502 164 194 22 chr11 118996551 118996916 -29786556 + MSTA LTR MaLR 1 428 0 6896 178 36 36 chr11 118996916 118996955 -29786517 - L1MA4A LINE L1 -2570 3733 3696 9600 151 4 25 chr11 118996955 118998568 -29784904 + MSTA-int LTR MaLR 1 1580 0 1542 175 186 16 chr11 118998568 118998934 -29784538 + MSTA LTR MaLR 1 428 0 6896 178 36 36 chr11 118998934 118999749 -29783723 - L1MA4A LINE L1 -2606 3697 2904 1508 185 117 55 chr11 118999769 119000301 -29783171 - MLT2A2 LTR ERVL 0 554 1 5905 87 32 12 chr11 119000301 119001178 -29782294 - HERVL-A2 LTR ERVL 0 5654 4761 25 31 0 0 chr11 119001438 119001470 -29782002 + AT_rich Low_complexity Low_complexity 1 32 0 427 276 61 58 chr11 119001718 119002553 -29780919 - L1ME LINE L1 -4671 1590 714 267 31 0 0 chr11 119003629 119003661 -29779811 + (CA)n Simple_repeat Simple_repeat 1 32 0 202 265 0 0 chr11 119004190 119004239 -29779233 + (TG)n Simple_repeat Simple_repeat 1 49 0 261 243 116 42 chr11 119004488 119004677 -29778795 + L1M4 LINE L1 4456 4658 -1488 6781 173 73 9 chr11 119005298 119007922 -29775550 + L1M1 LINE L1 129 3109 -3753 6204 231 80 7 chr11 119008042 119010781 -29772691 + L1M1 LINE L1 3545 6497 -523 7304 142 144 8 chr11 119010791 119012224 -29771248 + L1PBa LINE L1 3 1630 -5233 189 0 0 0 chr11 119012352 119012373 -29771099 + (C)n Simple_repeat Simple_repeat 1 21 0 342 0 0 0 chr11 119012375 119012413 -29771059 + (T)n Simple_repeat Simple_repeat 1 38 0 213 289 77 0 chr11 119013045 119013097 -29770375 + MIR SINE MIR 92 147 -61 897 255 95 0 chr11 119013113 119013344 -29770128 - MIR SINE MIR -8 254 2 257 330 76 50 chr11 119013877 119014373 -29769099 + L2 LINE L2 2597 3148 -124 229 312 25 11 chr11 119014481 119014589 -29768883 - MIR SINE MIR -62 146 32 202 322 17 0 chr11 119015115 119015174 -29768298 + MIR SINE MIR 9 68 -194 2827 217 16 10 chr11 119015314 119015936 -29767536 - MER82 DNA MER2_type -1 652 27 804 124 103 0 chr11 119016093 119016238 -29767234 + L1MA4 LINE L1 6138 6297 -3 1971 145 3 16 chr11 119016267 119016577 -29766895 - AluSx SINE Alu -6 306 1 435 269 143 40 chr11 119017334 119017557 -29765915 + MIR SINE MIR 13 258 -4 554 280 133 9 chr11 119017961 119018180 -29765292 + MIR SINE MIR 14 250 -12 318 316 87 55 chr11 119018515 119018768 -29764704 + L1ME LINE L1 5127 5387 -759 273 342 56 0 chr11 119018836 119018997 -29764475 + L1ME LINE L1 5491 5660 -502 395 163 47 12 chr11 119020807 119020893 -29762579 + LTR67 LTR ERVL 469 557 0 378 387 58 31 chr11 119021067 119021258 -29762214 - L2 LINE L2 -17 3255 3060 442 197 94 0 chr11 119021520 119021647 -29761825 + MER112 DNA MER1_type 87 225 -35 528 294 218 39 chr11 119021845 119022214 -29761258 + L2 LINE L2 1827 2129 -1185 1146 168 53 14 chr11 119022214 119022423 -29761049 - MER20 DNA MER1_type 0 219 3 528 294 218 39 chr11 119022423 119022673 -29760799 + L2 LINE L2 2129 2557 -757 192 336 46 38 chr11 119023421 119023552 -29759920 + L2 LINE L2 3179 3310 -3 530 265 56 19 chr11 119024552 119024714 -29758758 - MIR SINE MIR -5 257 90 23 33 0 0 chr11 119024835 119024865 -29758607 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr11 119024922 119024951 -29758521 + AT_rich Low_complexity Low_complexity 1 29 0 5959 48 0 0 chr11 119024951 119025675 -29757797 - L1PA5 LINE L1 -6 6148 5425 12550 48 0 21 chr11 119025675 119027204 -29756268 + L1P LINE L1 3717 5206 -940 2807 16 0 0 chr11 119027204 119027513 -29755959 - AluYb8 SINE Alu -9 309 1 12550 48 0 21 chr11 119027513 119027707 -29755765 + L1P LINE L1 5206 5403 -743 1780 180 0 10 chr11 119027814 119028108 -29755364 + AluJo SINE Alu 1 291 -21 2011 131 60 26 chr11 119028429 119028781 -29754691 + THE1B LTR MaLR 1 364 0 261 374 99 48 chr11 119029051 119029444 -29754028 - L2 LINE L2 -33 3239 2827 1001 220 68 29 chr11 119029538 119029887 -29753585 + MSTD LTR MaLR 1 396 0 270 302 126 6 chr11 119029891 119030050 -29753422 - L2 LINE L2 -588 2726 2549 1690 354 58 27 chr11 119030131 119031515 -29751957 + ERVL LTR ERVL 3718 5144 -620 309 262 24 0 chr11 119031554 119031680 -29751792 + ERVL LTR ERVL 5162 5290 -364 521 277 57 44 chr11 119031867 119032219 -29751253 + LTR16A1 LTR ERVL 19 429 -28 202 322 17 0 chr11 119032570 119032629 -29750843 + MIR SINE MIR 9 68 -194 2616 227 18 11 chr11 119032769 119033391 -29750081 - MER82 DNA MER2_type -1 652 27 804 124 103 0 chr11 119033548 119033693 -29749779 + L1MA4 LINE L1 6138 6297 -3 2044 145 3 0 chr11 119033722 119034026 -29749446 - AluSx SINE Alu -7 305 1 1558 211 25 0 chr11 119034029 119034313 -29749159 - AluJo SINE Alu -15 297 7 749 138 0 41 chr11 119034354 119034477 -29748995 - FLAM_C SINE Alu -15 118 1 206 118 0 29 chr11 119034865 119034899 -29748573 + (GAA)n Simple_repeat Simple_repeat 2 34 0 361 346 43 16 chr11 119035150 119035338 -29748134 - MIR SINE MIR -52 210 18 2906 219 85 4 chr11 119035339 119036236 -29747236 - L1MC4a LINE L1 -3 7805 6904 351 289 44 7 chr11 119036450 119036585 -29746887 - L1MD3 LINE L1 -1122 6873 6734 303 299 0 65 chr11 119036588 119036695 -29746777 - L1MEc LINE L1 -4759 2066 1967 333 250 16 55 chr11 119036699 119036827 -29746645 - L1MEc LINE L1 -4895 1751 1629 306 380 70 26 chr11 119037103 119037332 -29746140 - L1MEc LINE L1 -6295 247 9 205 75 50 0 chr11 119037450 119037490 -29745982 + (CAA)n Simple_repeat Simple_repeat 2 43 0 410 304 138 31 chr11 119037632 119037921 -29745551 - L1MEc LINE L1 -5970 426 107 673 278 38 19 chr11 119038887 119039096 -29744376 + MIR SINE MIR 14 226 -36 288 210 42 108 chr11 119039823 119039990 -29743482 - L1ME4a LINE L1 -2 6119 5964 566 280 130 68 chr11 119040012 119040480 -29742992 + MLT1L LTR MaLR 1 497 -118 189 0 0 0 chr11 119040583 119040604 -29742868 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 430 234 126 112 chr11 119041519 119041797 -29741675 + L1ME LINE L1 4915 5196 -950 1282 117 24 10 chr11 119041801 119042006 -29741466 - L1PA16 LINE L1 -281 5884 5677 1506 147 70 0 chr11 119042006 119042265 -29741207 + L1PA16 LINE L1 5881 6157 -9 1270 314 31 2 chr11 119042309 119042730 -29740742 + LTR16A LTR ERVL 18 450 0 821 277 12 64 chr11 119042829 119043017 -29740455 + L1ME LINE L1 5302 5458 -712 4537 60 2 2 chr11 119043017 119043597 -29739875 + L1PA7 LINE L1 5567 6146 -8 821 277 12 64 chr11 119043597 119043807 -29739665 + L1ME LINE L1 5458 5678 -492 307 308 154 0 chr11 119044303 119044446 -29739026 + MIR SINE MIR 92 256 -6 194 300 171 29 chr11 119044879 119045019 -29738453 - L3 LINE CR1 -615 962 803 201 307 9 18 chr11 119045195 119045309 -29738163 + CT-rich Low_complexity Low_complexity 2 114 0 203 137 0 39 chr11 119045312 119045363 -29738109 + (TCTG)n Simple_repeat Simple_repeat 4 52 0 22 35 0 0 chr11 119045734 119045763 -29737709 + AT_rich Low_complexity Low_complexity 1 29 0 1084 188 86 0 chr11 119045824 119046079 -29737393 - L1MA6 LINE L1 0 6300 6024 262 0 0 0 chr11 119046504 119046533 -29736939 + (TTTTG)n Simple_repeat Simple_repeat 2 180 0 2139 56 0 35 chr11 119046533 119046818 -29736654 - AluY SINE Alu -31 280 7 22 35 0 0 chr11 119046823 119046852 -29736620 + AT_rich Low_complexity Low_complexity 1 29 0 225 156 0 44 chr11 119046906 119046951 -29736521 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 233 254 14 56 chr11 119046970 119047041 -29736431 - L2 LINE L2 -48 3224 3157 751 202 77 12 chr11 119047046 119047214 -29736258 + MLT1C LTR MaLR 6 184 -283 1824 83 0 80 chr11 119047214 119047552 -29735920 + AluY SINE Alu 1 311 0 2555 36 10 0 chr11 119047720 119048021 -29735451 - AluY SINE Alu -7 304 1 228 239 0 0 chr11 119048127 119048173 -29735299 - L2 LINE L2 0 3272 3227 190 403 0 15 chr11 119048548 119048615 -29734857 + L2 LINE L2 3115 3180 -92 748 197 263 13 chr11 119050182 119050410 -29733062 - MLT1J1 LTR MaLR -161 285 1 809 211 4 110 chr11 119051160 119051397 -29732075 - MER20 DNA MER1_type -1 218 7 1103 123 27 27 chr11 119051693 119051880 -29731592 + L1PA16 LINE L1 5980 6166 0 394 292 0 66 chr11 119052081 119052218 -29731254 - MIR SINE MIR -115 147 20 2097 129 20 0 chr11 119052224 119052527 -29730945 - AluSx SINE Alu -3 309 1 5781 136 22 3 chr11 119053185 119054099 -29729373 + L1MC1 LINE L1 5384 6314 -19 355 302 141 33 chr11 119054306 119054548 -29728924 + MLT1I LTR MaLR 19 286 -123 14339 210 22 11 chr11 119055170 119055877 -29727595 + L1PB1 LINE L1 1708 2406 -4456 2309 98 0 0 chr11 119055877 119056173 -29727299 + AluY SINE Alu 1 296 -15 14339 210 22 11 chr11 119056173 119059786 -29723686 + L1PB1 LINE L1 2406 6119 -743 3206 107 4 18 chr11 119059791 119060294 -29723178 + L1PB1 LINE L1 6372 6867 0 506 16 16 0 chr11 119060515 119060578 -29722894 + (CA)n Simple_repeat Simple_repeat 1 64 0 1346 264 63 55 chr11 119060600 119060943 -29722529 + HAL1 LINE L1 887 1226 -1281 2555 52 0 16 chr11 119060943 119061253 -29722219 - AluY SINE Alu -6 305 1 1346 264 63 55 chr11 119061253 119061636 -29721836 + HAL1 LINE L1 1226 1619 -888 248 239 120 0 chr11 119061657 119061749 -29721723 + L1M4 LINE L1 4745 4847 -1299 310 218 0 0 chr11 119061755 119061810 -29721662 + L2 LINE L2 3252 3306 -7 541 283 95 22 chr11 119061852 119062219 -29721253 + L1M4 LINE L1 4876 5269 -877 * 4897 140 34 9 chr11 119062214 119063107 -29720365 + L1MA6 LINE L1 4510 5422 -807 2153 125 3 19 chr11 119063107 119063420 -29720052 + AluSx SINE Alu 1 308 -4 4897 140 34 9 chr11 119063420 119063485 -29719987 + L1MA6 LINE L1 5422 5484 -745 536 193 34 17 chr11 119063490 119063609 -29719863 + L1PB4 LINE L1 6034 6154 -2 3631 170 47 26 chr11 119063609 119064415 -29719057 + L1MA6 LINE L1 5476 6300 0 3677 170 41 20 chr11 119067499 119067593 -29715879 - MER44D DNA MER2_type -1882 705 614 219 114 0 0 chr11 119067593 119067628 -29715844 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2092 124 0 0 chr11 119067630 119067913 -29715559 - AluSx SINE Alu -29 283 1 3677 170 41 20 chr11 119067913 119068505 -29714967 - MER44D DNA MER2_type -1973 614 2 372 295 116 0 chr11 119068645 119068774 -29714698 + MIR SINE MIR 1 144 -118 264 277 84 25 chr11 119068824 119068943 -29714529 - L1MEd LINE L1 -5358 761 636 6368 88 14 4 chr11 119069379 119071184 -29712288 - L1PA11 LINE L1 0 6174 4346 234 62 0 0 chr11 119071273 119071305 -29712167 + (T)n Simple_repeat Simple_repeat 1 32 0 384 236 133 67 chr11 119072436 119072601 -29710871 - MER69A DNA AcHobo -1 176 1 31 82 0 0 chr11 119072689 119072762 -29710710 + AT_rich Low_complexity Low_complexity 1 73 0 973 308 54 29 chr11 119073035 119073571 -29709901 + L2 LINE L2 2460 3002 -270 280 229 119 9 chr11 119073654 119073763 -29709709 + L1ME4a LINE L1 5987 6107 -14 26 0 0 0 chr11 119074036 119074062 -29709410 + AT_rich Low_complexity Low_complexity 1 26 0 833 308 246 19 chr11 119074269 119074944 -29708528 - L3 LINE CR1 -103 1474 647 229 106 21 21 chr11 119075005 119075052 -29708420 + (TA)n Simple_repeat Simple_repeat 1 47 0 482 265 61 14 chr11 119075325 119075472 -29708000 - L2 LINE L2 0 3313 3160 2289 151 70 89 chr11 119076252 119076782 -29706690 - MLT2B1 LTR ERVL 0 520 1 23 0 0 0 chr11 119077932 119077955 -29705517 + AT_rich Low_complexity Low_complexity 1 23 0 219 36 0 0 chr11 119078105 119078133 -29705339 + (A)n Simple_repeat Simple_repeat 1 28 0 239 358 57 32 chr11 119078638 119078761 -29704711 - L2 LINE L2 -2 3270 3145 495 330 184 15 chr11 119078823 119079214 -29704258 + L2 LINE L2 2815 3271 -1 326 280 161 0 chr11 119079638 119079756 -29703716 + MIR3 SINE MIR 32 168 -40 1451 183 27 10 chr11 119079912 119080207 -29703265 + AluJo SINE Alu 11 310 -2 402 115 0 0 chr11 119080219 119080280 -29703192 + (GGAA)n Simple_repeat Simple_repeat 4 64 0 787 52 0 0 chr11 119081053 119081150 -29702322 + L1PA5 LINE L1 6052 6148 -6 180 0 0 0 chr11 119081164 119081184 -29702288 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 687 224 0 29 chr11 119081405 119081610 -29701862 + L1MC4 LINE L1 6885 7083 -959 768 270 76 35 chr11 119081902 119082272 -29701200 + L1MC4 LINE L1 7152 7536 -506 696 255 10 5 chr11 119082378 119082586 -29700886 - L1M4 LINE L1 -816 5330 5122 1792 149 39 3 chr11 119082632 119082941 -29700531 + Tigger3(Golem) DNA MER2_type 4 323 -2706 28 29 0 0 chr11 119082941 119082976 -29700496 + AT_rich Low_complexity Low_complexity 1 35 0 501 137 37 64 chr11 119082996 119083697 -29699775 + (TA)n Simple_repeat Simple_repeat 1 681 0 1700 262 109 35 chr11 119083819 119084829 -29698643 - L1M4 LINE L1 -904 5242 4158 451 234 15 22 chr11 119084851 119084988 -29698484 - L1MEc LINE L1 -4634 1762 1627 409 182 11 11 chr11 119084984 119085072 -29698400 - L1ME3A LINE L1 0 6170 6083 * 637 250 91 6 chr11 119085100 119085527 -29697945 - L1ME3A LINE L1 -173 5997 5500 741 119 17 8 chr11 119085630 119085748 -29697724 + AluSg/x SINE Alu 178 296 -16 364 317 57 0 chr11 119086135 119086258 -29697214 + L3 LINE CR1 1298 1427 -150 363 293 7 107 chr11 119087139 119087289 -29696183 + MIR SINE MIR 20 154 -108 252 312 72 7 chr11 119088316 119088454 -29695018 - L1ME4a LINE L1 -1 6120 5974 2795 90 2 18 chr11 119090799 119091198 -29692274 + THE1C-int LTR MaLR 1181 1573 -7 1737 134 84 39 chr11 119091206 119091563 -29691909 + THE1C LTR MaLR 3 375 0 1281 160 9 14 chr11 119094370 119094589 -29688883 - MER20 DNA MER1_type 0 219 2 511 322 46 0 chr11 119094873 119095025 -29688447 + LTR16A LTR ERVL 52 210 -240 799 222 145 0 chr11 119095860 119096067 -29687405 - LTR16A LTR ERVL 0 450 214 1139 8 0 0 chr11 119097110 119097237 -29686235 - L1P2 LINE L1 -418 5736 5610 791 21 0 0 chr11 119097237 119097332 -29686140 + L1PA4 LINE L1 6060 6155 0 23 33 0 0 chr11 119098460 119098490 -29684982 + AT_rich Low_complexity Low_complexity 1 30 0 481 250 115 45 chr11 119099343 119099543 -29683929 + MLT1J1 LTR MaLR 21 234 -212 556 196 14 8 chr11 119099550 119099670 -29683802 + MLT1J2 LTR MaLR 284 450 0 401 290 80 53 chr11 119099677 119099939 -29683533 - L1MC4a LINE L1 -1857 5951 5683 265 205 214 34 chr11 119100203 119100320 -29683152 + MER103 DNA DNA 25 162 -4 921 173 13 0 chr11 119100563 119100713 -29682759 + MER2 DNA MER2_type 1 152 -193 1000 250 74 80 chr11 119100928 119101452 -29682020 + LTR33A LTR ERVL 1 521 -2 2135 144 8 29 chr11 119101786 119102169 -29681303 + THE1C LTR MaLR 1 375 0 714 286 17 35 chr11 119102184 119102415 -29681057 + MIR SINE MIR 36 262 0 556 250 168 51 chr11 119102784 119103076 -29680396 + MLT1I LTR MaLR 74 399 -10 186 214 0 24 chr11 119103475 119103517 -29679955 - L2 LINE L2 -291 2981 2941 2897 228 19 17 chr11 119103532 119104256 -29679216 + L1M4 LINE L1 3530 4255 -1891 247 272 76 72 chr11 119104242 119104661 -29678811 + L1M4 LINE L1 4978 5398 -748 * 750 239 55 55 chr11 119105630 119106208 -29677264 + L1M4 LINE L1 2760 3337 -2809 981 109 0 0 chr11 119106381 119106509 -29676963 - AluSq/x SINE Alu -181 132 5 1539 179 7 14 chr11 119107176 119107472 -29676000 + L1PB4 LINE L1 5856 6149 -7 499 303 53 33 chr11 119108591 119108743 -29674729 - L2 LINE L2 0 3272 3118 186 43 0 0 chr11 119108795 119108818 -29674654 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 362 322 94 20 chr11 119108868 119109070 -29674402 + MIR SINE MIR 2 218 -44 258 287 103 59 chr11 119110646 119110782 -29672690 - MIR3 SINE MIR -63 145 4 268 273 121 0 chr11 119110833 119110899 -29672573 + MIR SINE MIR 32 105 -157 435 255 65 13 chr11 119110967 119111120 -29672352 + L1MEd LINE L1 34 194 -5925 627 304 85 45 chr11 119111406 119111807 -29671665 + L1MEd LINE L1 364 780 -5339 246 146 104 94 chr11 119111922 119112018 -29671454 - L1ME4a LINE L1 -49 6072 5976 1538 106 0 0 chr11 119112450 119112677 -29670795 + L1MA2 LINE L1 6078 6304 0 309 225 113 21 chr11 119112808 119112950 -29670522 + L1ME4a LINE L1 5956 6110 -11 235 307 33 52 chr11 119113139 119113292 -29670180 + L2 LINE L2 2941 3090 -182 255 154 114 126 chr11 119114082 119114257 -29669215 - MIR3 SINE MIR -58 150 9 270 294 59 82 chr11 119115328 119115498 -29667974 - L2 LINE L2 0 3272 3107 606 329 44 25 chr11 119115512 119115764 -29667708 - MIR SINE MIR 0 262 9 230 254 309 40 chr11 119115814 119115940 -29667532 - L2 LINE L2 -201 3071 2912 234 220 80 40 chr11 119116851 119116951 -29666521 + L1MEd LINE L1 983 1086 -6010 595 307 26 21 chr11 119117070 119117365 -29666107 + L1M3 LINE L1 11 1210 -5827 * 1473 250 43 50 chr11 119117359 119118243 -29665229 + L1M3 LINE L1 1585 2464 -4573 206 234 0 0 chr11 119118317 119118364 -29665108 + GA-rich Low_complexity Low_complexity 3 49 0 6269 232 71 34 chr11 119118364 119118986 -29664486 + L1MEd LINE L1 1997 2594 -4512 1952 158 3 0 chr11 119118986 119119284 -29664188 + AluSx SINE Alu 1 299 -13 6269 232 71 34 chr11 119119284 119120959 -29662513 + L1MEd LINE L1 2594 4444 -2662 2248 78 0 0 chr11 119120959 119121280 -29662192 + AluY SINE Alu 1 321 0 6269 232 71 34 chr11 119121280 119121917 -29661555 + L1MEd LINE L1 4444 5056 -2050 4710 204 34 6 chr11 119121915 119123040 -29660432 + L1M3 LINE L1 5261 6411 -743 * 279 220 0 17 chr11 119123040 119123099 -29660373 + MSTB LTR MaLR 1 58 -368 2064 136 3 3 chr11 119123099 119123401 -29660071 + AluSx SINE Alu 1 302 -10 578 254 16 65 chr11 119123796 119123981 -29659491 + MIR3 SINE MIR 3 178 -30 211 241 108 24 chr11 119124071 119124154 -29659318 - L2 LINE L2 -7 3306 3217 243 280 0 0 chr11 119124474 119124524 -29658948 + polypurine Low_complexity Low_complexity 4 53 0 1067 101 85 5 chr11 119125043 119125231 -29658241 - L1MA2 LINE L1 -167 6137 5935 808 100 0 0 chr11 119125354 119125464 -29658008 - L1MA2 LINE L1 -376 5928 5819 283 258 0 0 chr11 119125743 119125805 -29657667 - L2 LINE L2 -2 3311 3250 668 198 0 0 chr11 119125894 119126015 -29657457 + MER63A DNA MER1_type 61 181 -29 523 287 47 74 chr11 119126107 119126365 -29657107 - MIR SINE MIR -7 255 5 230 338 12 0 chr11 119126503 119126583 -29656889 + MLT1J2 LTR MaLR 34 114 -336 252 0 0 0 chr11 119126583 119126611 -29656861 + (TG)n Simple_repeat Simple_repeat 2 29 0 604 274 117 32 chr11 119126640 119126888 -29656584 + MLT1J2 LTR MaLR 182 450 0 828 347 86 16 chr11 119126900 119127368 -29656104 - L2 LINE L2 -281 2991 2503 733 340 81 40 chr11 119127514 119128032 -29655440 - LTR67 LTR ERVL -15 542 4 2351 88 0 0 chr11 119128032 119128340 -29655132 + AluY SINE Alu 1 308 -3 22 35 0 0 chr11 119128563 119128592 -29654880 + AT_rich Low_complexity Low_complexity 1 29 0 429 243 65 9 chr11 119129421 119129528 -29653944 + MER94 DNA DNA 22 134 0 199 354 146 13 chr11 119129552 119129710 -29653762 - L2 LINE L2 -540 2774 2596 263 233 110 0 chr11 119130384 119130457 -29653015 + MIR SINE MIR 57 137 -125 8490 22 5 1 chr11 119132356 119133878 -29649594 + L1PA3 LINE L1 4347 5876 -279 380 245 145 28 chr11 119134145 119134435 -29649037 + L1 LINE L1 4103 4426 -1720 373 286 25 35 chr11 119134504 119134707 -29648765 + L1 LINE L1 4630 4830 -1316 748 167 0 15 chr11 119134849 119134981 -29648491 + FLAM_C SINE Alu 3 132 -11 11921 189 57 31 chr11 119135033 119135513 -29647959 + L1MA10 LINE L1 2244 2710 -3860 486 0 0 0 chr11 119135513 119135567 -29647905 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 11921 189 57 31 chr11 119135567 119135629 -29647843 + L1MA10 LINE L1 2710 2769 -3801 2213 127 0 3 chr11 119135629 119135936 -29647536 + AluSx SINE Alu 1 306 -6 11921 189 57 31 chr11 119135936 119136241 -29647231 + L1MA10 LINE L1 2769 3065 -3505 1197 152 16 53 chr11 119136241 119136485 -29646987 - MER46A DNA MER2_type -1 235 1 11921 189 57 31 chr11 119136485 119136596 -29646876 + L1MA10 LINE L1 3065 3172 -3398 2434 102 8 8 chr11 119136596 119136949 -29646523 + THE1A LTR MaLR 3 355 0 11921 189 57 31 chr11 119136949 119140205 -29643267 + L1MA10 LINE L1 3172 6569 -1 585 236 152 6 chr11 119140410 119140575 -29642897 - MER5A DNA MER1_type 0 189 1 489 230 20 117 chr11 119140581 119140777 -29642695 + MER5B DNA MER1_type 2 178 0 321 259 59 0 chr11 119140811 119140896 -29642576 - L1MC4 LINE L1 -1339 6703 6614 254 206 14 0 chr11 119140896 119140969 -29642503 + (TA)n Simple_repeat Simple_repeat 2 75 0 317 233 46 10 chr11 119140984 119141123 -29642349 + L1ME1 LINE L1 5722 5863 -303 2199 55 4 15 chr11 119141471 119141744 -29641728 + AluY SINE Alu 16 285 -26 271 345 21 62 chr11 119142161 119142306 -29641166 - MER5A DNA MER1_type -34 155 17 570 80 0 0 chr11 119143606 119143705 -29639767 + AluY SINE Alu 209 307 0 185 325 50 12 chr11 119143884 119143964 -29639508 - MIR3 SINE MIR -18 190 108 192 336 122 0 chr11 119144020 119144151 -29639321 - L2 LINE L2 0 3272 3126 21934 30 0 4 chr11 119144232 119147642 -29635830 + L1PA4 LINE L1 2748 6155 0 1851 155 0 36 chr11 119148339 119148643 -29634829 - AluSx SINE Alu -19 293 1 2100 252 62 75 chr11 119148743 119149060 -29634412 + L1ME LINE L1 2 321 -5759 1891 152 0 23 chr11 119149060 119149369 -29634103 + AluJb SINE Alu 1 302 -10 2100 252 62 75 chr11 119149369 119150308 -29633164 + L1ME LINE L1 321 1270 -4810 788 228 62 75 chr11 119150333 119150706 -29632766 - L1M4 LINE L1 -3654 2492 2125 575 279 122 20 chr11 119150967 119151221 -29632251 - L2 LINE L2 -5 3308 3029 361 319 9 18 chr11 119152563 119152676 -29630796 + L2 LINE L2 3160 3271 -1 387 0 0 0 chr11 119152715 119152758 -29630714 + (TG)n Simple_repeat Simple_repeat 2 44 0 201 297 62 16 chr11 119152920 119152984 -29630488 + L2 LINE L2 2643 2709 -605 405 343 56 7 chr11 119153020 119153163 -29630309 - L2 LINE L2 -2 3270 3121 3366 102 20 0 chr11 119153199 119153690 -29629782 + L1PA14 LINE L1 5661 6161 0 284 347 155 20 chr11 119153916 119154167 -29629305 - L2 LINE L2 -438 2876 2592 246 154 0 0 chr11 119155073 119155112 -29628360 - L2 LINE L2 -17 3296 3258 338 408 0 8 chr11 119155220 119155345 -29628127 - MER91A DNA MER1_type -72 124 1 196 344 52 0 chr11 119155345 119155441 -29628031 - L2 LINE L2 -48 3265 3165 3183 162 33 21 chr11 119155916 119156489 -29626983 + MER6A DNA MER2_type 26 605 0 376 303 62 76 chr11 119156720 119157153 -29626319 + L1MC4a LINE L1 39 465 -5958 528 296 72 53 chr11 119157557 119157662 -29625810 + L1MC4a LINE L1 1354 1456 -5485 7696 92 3 0 chr11 119157662 119159557 -29623915 + L1PA7 LINE L1 4261 6143 -11 528 296 72 53 chr11 119159557 119160230 -29623242 + L1MC4a LINE L1 1456 2156 -4785 4151 244 39 78 chr11 119160352 119162244 -29621228 + L1MC4a LINE L1 5818 6167 -774 1264 169 55 0 chr11 119162237 119162473 -29620999 + L1MC/D LINE L1 5507 5755 -604 * 2289 232 52 15 chr11 119162476 119163156 -29620316 + L1MCb LINE L1 837 1565 -4997 225 0 0 0 chr11 119163156 119163181 -29620291 + (CAAAC)n Simple_repeat Simple_repeat 5 29 0 2289 232 52 15 chr11 119163181 119163334 -29620138 + L1MCb LINE L1 1565 1711 -4851 415 77 15 0 chr11 119163339 119163404 -29620068 - LTR19A LTR ERV1 0 486 421 2718 131 32 36 chr11 119163429 119163903 -29619569 - MER4E LTR ERV1 -303 476 5 21289 89 21 5 chr11 119163918 119164761 -29618711 + L1PA7 LINE L1 2251 3078 -3076 1631 97 0 5 chr11 119164761 119164977 -29618495 + AluSc SINE Alu 82 296 -13 21289 89 21 5 chr11 119164977 119168001 -29615471 + L1PA7 LINE L1 3078 6154 0 26 30 0 0 chr11 119168053 119168086 -29615386 + AT_rich Low_complexity Low_complexity 1 33 0 530 321 90 48 chr11 119168414 119168964 -29614508 + L1ME3A LINE L1 792 1375 -5122 230 288 181 9 chr11 119168977 119169203 -29614269 + L1ME3A LINE L1 1958 2222 -4385 7164 251 48 18 chr11 119169228 119171796 -29611676 + L1ME3A LINE L1 2331 4937 -1489 1357 249 30 0 chr11 119171928 119172297 -29611175 + L1ME3A LINE L1 5603 5982 -462 489 193 59 15 chr11 119172291 119172426 -29611046 - L1M4 LINE L1 -947 5199 5059 * 224 323 95 17 chr11 119173550 119173680 -29609792 - MIR SINE MIR -63 145 8 6322 172 38 29 chr11 119173698 119176129 -29607343 + L1MA4A LINE L1 3851 6302 -1 971 232 104 63 chr11 119176147 119176608 -29606864 + L1ME3A LINE L1 5971 6450 0 768 260 35 30 chr11 119176707 119176873 -29606599 + MIR SINE MIR 31 195 -67 13917 134 45 14 chr11 119176873 119178308 -29605164 - Tigger1 DNA MER2_type 0 2418 1030 2106 113 0 3 chr11 119178308 119178632 -29604840 + AluSx SINE Alu 1 323 0 13917 134 45 14 chr11 119178632 119178880 -29604592 - Tigger1 DNA MER2_type -1388 1030 791 2810 10 0 0 chr11 119178880 119179188 -29604284 + AluY SINE Alu 1 308 -3 13917 134 45 14 chr11 119179188 119179846 -29603626 - Tigger1 DNA MER2_type -1627 791 1 768 260 35 30 chr11 119179846 119179910 -29603562 + MIR SINE MIR 195 262 0 2170 129 0 0 chr11 119180424 119180733 -29602739 - AluSc SINE Alu 0 309 1 22 35 0 0 chr11 119181085 119181114 -29602358 + AT_rich Low_complexity Low_complexity 1 29 0 28342 32 1 0 chr11 119182269 119185731 -29597741 - L1P LINE L1 -785 5361 1896 407 225 56 0 chr11 119185742 119185831 -29597641 - MER5A DNA MER1_type -87 102 9 6943 55 4 0 chr11 119186584 119187549 -29595923 - L1PA6 LINE L1 -3 6151 5177 309 291 67 78 chr11 119187878 119188128 -29595344 - MIR SINE MIR -26 236 1 989 245 110 65 chr11 119188663 119189080 -29594392 + LTR16A1 LTR ERVL 22 457 0 781 309 11 30 chr11 119189265 119189530 -29593942 - MIR SINE MIR 0 262 3 2168 116 3 19 chr11 119189841 119190151 -29593321 + AluSx SINE Alu 1 305 -7 582 306 89 18 chr11 119190270 119190551 -29592921 - LTR16C LTR ERVL -190 301 1 520 360 16 12 chr11 119191805 119192047 -29591425 + MIR SINE MIR 20 262 0 384 299 90 8 chr11 119192157 119192291 -29591181 - MIR SINE MIR -98 164 20 782 268 98 9 chr11 119192862 119193086 -29590386 - MIR SINE MIR -6 256 13 754 235 149 32 chr11 119193224 119193445 -29590027 - MIR SINE MIR -9 253 7 349 295 79 16 chr11 119193714 119193904 -29589568 + MIR SINE MIR 15 214 -48 375 336 61 15 chr11 119194667 119194798 -29588674 - MER5A DNA MER1_type 0 189 53 533 293 71 6 chr11 119195015 119195195 -29588277 + MIR SINE MIR 1 192 -63 250 250 36 0 chr11 119197310 119197366 -29586106 - L2 LINE L2 0 3272 3215 457 209 22 0 chr11 119197556 119197647 -29585825 - MIR SINE MIR -136 126 34 355 340 129 24 chr11 119198265 119198823 -29584649 + L2 LINE L2 2471 3090 -182 190 328 0 16 chr11 119199002 119199063 -29584409 + MIR3 SINE MIR 121 180 -28 847 260 143 11 chr11 119199104 119199377 -29584095 + L2 LINE L2 3004 3312 -1 28 29 0 0 chr11 119205869 119205904 -29577568 + AT_rich Low_complexity Low_complexity 1 35 0 213 65 0 0 chr11 119208357 119208388 -29575084 + (CAAAAA)n Simple_repeat Simple_repeat 2 32 0 188 256 0 0 chr11 119209744 119209783 -29573689 - L2 LINE L2 -10 3303 3265 294 329 88 29 chr11 119209897 119210034 -29573438 + MIR3 SINE MIR 16 160 -48 366 303 72 20 chr11 119210039 119210191 -29573281 + MER117 DNA MER1_type 6 165 -32 2111 124 52 22 chr11 119210199 119210563 -29572909 - THE1C LTR MaLR 0 375 1 273 284 78 20 chr11 119210649 119210751 -29572721 - L2 LINE L2 -4 3268 3161 199 307 55 94 chr11 119211355 119211482 -29571990 - MIR SINE MIR -57 151 30 294 265 154 7 chr11 119211608 119211744 -29571728 + MER103 DNA DNA 4 159 -7 528 408 11 0 chr11 119212484 119212658 -29570814 - MER91A DNA MER1_type -20 176 1 215 315 0 19 chr11 119212817 119212871 -29570601 + MIR SINE MIR 60 112 -96 1151 249 171 12 chr11 119212910 119213177 -29570295 + MLT1H LTR MaLR 76 299 -250 276 30 0 0 chr11 119213177 119213210 -29570262 + (CA)n Simple_repeat Simple_repeat 1 33 0 1151 249 171 12 chr11 119213210 119213351 -29570121 + MLT1H LTR MaLR 299 549 0 245 61 0 0 chr11 119213351 119213384 -29570088 - L1P LINE L1 -1210 4936 4904 3174 57 2 0 chr11 119213416 119213819 -29569653 + L1PA8 LINE L1 5764 6167 -5 183 333 153 0 chr11 119213862 119213934 -29569538 + MIR3 SINE MIR 116 198 -10 1591 181 0 0 chr11 119214053 119214302 -29569170 + AluJo SINE Alu 1 249 -63 2170 209 19 86 chr11 119214345 119215018 -29568454 - MER92B LTR ERV1 -8 628 1 1653 219 22 14 chr11 119215837 119216207 -29567265 - MLT1A2 LTR MaLR -1 373 1 256 197 28 14 chr11 119217429 119217500 -29565972 + (TA)n Simple_repeat Simple_repeat 2 73 0 234 0 0 0 chr11 119217780 119217806 -29565666 + (CA)n Simple_repeat Simple_repeat 2 27 0 461 256 23 45 chr11 119217834 119218010 -29565462 - LTR67 LTR ERVL -32 525 354 245 51 26 0 chr11 119218249 119218288 -29565184 + (GA)n Simple_repeat Simple_repeat 2 41 0 230 342 0 0 chr11 119218305 119218384 -29565088 - LTR67 LTR ERVL -476 81 3 1094 235 11 8 chr11 119220146 119220406 -29563066 - MLT1C LTR MaLR -1 466 206 318 67 0 0 chr11 119220453 119220498 -29562974 + (T)n Simple_repeat Simple_repeat 1 45 0 25 0 0 0 chr11 119221462 119221487 -29561985 + AT_rich Low_complexity Low_complexity 1 25 0 27 29 0 0 chr11 119221652 119221686 -29561786 + AT_rich Low_complexity Low_complexity 1 34 0 2071 115 42 0 chr11 119221725 119221847 -29561625 + AluSq SINE Alu 1 116 -197 429 36 0 0 chr11 119221847 119221902 -29561570 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 2071 115 42 0 chr11 119221902 119222065 -29561407 + AluSq SINE Alu 116 298 -15 213 227 113 62 chr11 119222923 119223020 -29560452 - MIR SINE MIR 0 262 161 186 167 83 0 chr11 119223051 119223087 -29560385 - L2 LINE L2 0 3272 3234 253 303 0 0 chr11 119223712 119223778 -29559694 + MIR SINE MIR 86 151 -111 444 328 48 48 chr11 119223894 119224226 -29559246 + L3 LINE CR1 1067 1398 -179 733 272 105 8 chr11 119224240 119224497 -29558975 + Charlie2 DNA MER1_type 1 282 -2580 715 215 21 0 chr11 119224649 119224835 -29558637 + Charlie2a DNA MER1_type 1482 1671 -1191 390 248 77 17 chr11 119224856 119224973 -29558499 - L2 LINE L2 0 3313 3190 396 198 0 0 chr11 119225331 119225417 -29558055 - MER20 DNA MER1_type 0 219 134 1125 174 0 37 chr11 119225511 119225729 -29557743 - AluJo SINE Alu -18 294 85 1885 220 48 54 chr11 119225745 119226285 -29557187 + MLT1E2 LTR MaLR 86 622 -4 689 139 28 56 chr11 119226288 119226432 -29557040 - MER20 DNA MER1_type -79 140 1 2037 124 10 0 chr11 119227015 119227306 -29556166 - AluSx SINE Alu -18 294 1 232 319 53 9 chr11 119228205 119228318 -29555154 - LTR16C LTR ERVL -177 314 197 216 0 0 0 chr11 119228947 119228971 -29554501 + (TC)n Simple_repeat Simple_repeat 1 24 0 1110 282 68 54 chr11 119229434 119229917 -29553555 - LTR16C LTR ERVL 0 491 2 359 89 18 0 chr11 119230122 119230178 -29553294 + (CA)n Simple_repeat Simple_repeat 2 58 0 324 282 133 37 chr11 119230839 119231027 -29552445 - MIR SINE MIR -50 212 7 356 335 108 10 chr11 119231228 119231431 -29552041 + MIR SINE MIR 28 250 -12 424 314 103 6 chr11 119232975 119233131 -29550341 - MIR SINE MIR -72 190 20 912 120 0 15 chr11 119233520 119233653 -29549819 + AluSq/x SINE Alu 1 131 -182 2486 178 104 2 chr11 119234166 119234750 -29548722 - MER63C DNA MER1_type -37 893 250 3268 130 6 9 chr11 119234750 119235295 -29548177 + L1MA8 LINE L1 5619 6161 -130 671 211 72 0 chr11 119235307 119235501 -29547971 - MER63C DNA MER1_type -665 265 58 299 211 0 14 chr11 119235568 119235639 -29547833 - MER63C DNA MER1_type -859 71 2 185 65 32 0 chr11 119235734 119235765 -29547707 + (GA)n Simple_repeat Simple_repeat 1 32 0 400 188 239 7 chr11 119235968 119236106 -29547366 - LTR67 LTR ERVL 0 557 388 364 376 77 24 chr11 119236420 119236718 -29546754 - L2 LINE L2 -4 3268 2955 22 0 0 0 chr11 119237129 119237151 -29546321 + GC_rich Low_complexity Low_complexity 1 22 0 4187 189 94 97 chr11 119237214 119238343 -29545129 + L1MA3 LINE L1 1105 2229 -5336 12399 172 34 33 chr11 119238350 119238827 -29544645 + L1MA3 LINE L1 3706 4181 -3403 1885 81 45 4 chr11 119238827 119239074 -29544398 + AluSc SINE Alu 5 261 -48 12399 172 34 33 chr11 119239074 119242487 -29540985 + L1MA3 LINE L1 4181 7577 -7 809 153 34 6 chr11 119242482 119242659 -29540813 + L1MA1 LINE L1 5936 6117 -185 * 27917 74 7 1 chr11 119242778 119246489 -29536983 - HERVL LTR ERVL -454 5200 1467 4870 148 46 16 chr11 119246593 119247628 -29535844 - L1PA15 LINE L1 -41 6124 5056 1420 198 13 6 chr11 119247625 119247939 -29535533 + L1PA15 LINE L1 4737 5052 -1094 * 2267 259 74 44 chr11 119247959 119248726 -29534746 + L2 LINE L2 1336 2125 -1189 243 218 0 0 chr11 119250053 119250108 -29533364 + (TA)n Simple_repeat Simple_repeat 1 55 0 377 257 90 7 chr11 119250464 119250608 -29532864 + Charlie8 DNA MER1_type 24 179 -2238 712 220 102 0 chr11 119250616 119250802 -29532670 + MER63A DNA MER1_type 6 210 0 1520 180 37 39 chr11 119251305 119251660 -29531812 - MLT1A1 LTR MaLR -2 363 10 404 333 25 0 chr11 119251845 119251965 -29531507 - MER91C DNA MER1_type 0 140 18 2643 166 94 4 chr11 119251972 119252485 -29530987 - MER89 LTR ERV1 0 559 1 222 288 0 0 chr11 119252971 119253044 -29530428 + A-rich Low_complexity Low_complexity 2 74 0 437 128 218 0 chr11 119254649 119254727 -29528745 - FLAM_A SINE Alu -17 125 31 21 71 0 0 chr11 119255562 119255604 -29527868 + AT_rich Low_complexity Low_complexity 1 42 0 562 221 13 0 chr11 119255624 119255778 -29527694 + L1MA4A LINE L1 5171 5326 -820 * 4936 48 0 0 chr11 119255764 119256391 -29527081 + L1PA3 LINE L1 5509 6135 -20 2888 75 0 8 chr11 119256594 119256982 -29526490 + L1PA6 LINE L1 5770 6154 0 255 159 0 0 chr11 119256982 119257036 -29526436 + A-rich Low_complexity Low_complexity 7 63 0 207 0 0 0 chr11 119257090 119257113 -29526359 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3434 154 43 23 chr11 119257113 119257249 -29526223 + L1MA4A LINE L1 5302 5434 -869 2086 119 0 0 chr11 119257249 119257534 -29525938 + AluSx SINE Alu 1 285 -27 3434 154 43 23 chr11 119257534 119257679 -29525793 + L1MA4A LINE L1 5434 5575 -728 1824 146 182 3 chr11 119257679 119258042 -29525430 + MSTA LTR MaLR 1 428 0 3434 154 43 23 chr11 119258042 119258452 -29525020 + L1MA4A LINE L1 5575 6008 -295 465 320 37 98 chr11 119258542 119258867 -29524605 + L2 LINE L2 2967 3271 -1 4519 118 28 34 chr11 119259482 119260398 -29523074 + L1PB1 LINE L1 5285 6172 0 321 231 8 100 chr11 119260483 119260613 -29522859 + L1ME4a LINE L1 5928 6045 -76 5825 92 26 8 chr11 119260635 119261525 -29521947 - L1PA8 LINE L1 -9 6163 5258 338 315 77 38 chr11 119261655 119261890 -29521582 - MIR SINE MIR -2 260 17 220 340 177 3 chr11 119262466 119262689 -29520783 - MIR SINE MIR -4 258 4 571 262 96 32 chr11 119262944 119263131 -29520341 + MER58A DNA MER1_type 1 199 -25 212 371 59 12 chr11 119263383 119263553 -29519919 - L2 LINE L2 -1313 2001 1824 762 210 0 7 chr11 119264244 119264387 -29519085 - AluSq/x SINE Alu -168 144 3 1267 91 5 0 chr11 119264390 119264576 -29518896 + L1MA2 LINE L1 6118 6304 0 391 194 54 54 chr11 119266228 119266357 -29517115 - L1MEd LINE L1 -5059 1060 932 553 252 12 73 chr11 119266359 119266605 -29516867 - L1ME3A LINE L1 -22 6148 5918 401 225 99 9 chr11 119266644 119266857 -29516615 - L1M4 LINE L1 -2915 3729 3498 * 796 247 73 50 chr11 119266853 119267403 -29516069 - L1M4 LINE L1 -4976 1566 996 1564 176 16 28 chr11 119267409 119267732 -29515740 - L1MC1 LINE L1 0 6333 6015 201 274 155 0 chr11 119269704 119269788 -29513684 - MIR SINE MIR -17 245 149 1760 188 65 21 chr11 119269990 119270362 -29513110 + MSTA LTR MaLR 5 392 -36 4127 17 4 0 chr11 119270362 119270840 -29512632 - L1PA2 LINE L1 -5 6150 5671 373 192 39 0 chr11 119270879 119270957 -29512515 + MLT1I LTR MaLR 308 388 -21 545 224 40 8 chr11 119271199 119271324 -29512148 + FLAM_A SINE Alu 1 129 -4 438 191 135 8 chr11 119271412 119271538 -29511934 + L1ME1 LINE L1 6010 6151 -15 657 283 159 40 chr11 119272502 119272855 -29510617 - L2 LINE L2 -1 3312 2918 4138 21 14 0 chr11 119272938 119273423 -29510049 - L1PA2 LINE L1 0 6155 5664 874 316 71 46 chr11 119273425 119273989 -29509483 - L2 LINE L2 -420 2894 2317 1241 217 135 0 chr11 119273990 119274317 -29509155 + MLT2B1 LTR ERVL 1 371 -149 288 125 28 0 chr11 119274317 119274378 -29509094 - MLT2A1 LTR ERVL 0 444 388 192 127 55 0 chr11 119274382 119274437 -29509035 + (TA)n Simple_repeat Simple_repeat 2 59 0 2886 87 0 5 chr11 119274438 119274840 -29508632 - MLT2A1 LTR ERVL -44 400 1 690 0 34 0 chr11 119274840 119274928 -29508544 - HERVL-A1 LTR ERVL 0 5654 5564 7281 76 18 1 chr11 119275028 119276017 -29507455 - HERVL-A1 LTR ERVL -4648 1006 1 365 77 0 0 chr11 119276017 119276076 -29507396 - MLT2A1 LTR ERVL 0 444 395 231 323 62 0 chr11 119276085 119276317 -29507155 + (CA)n Simple_repeat Simple_repeat 1 246 0 585 120 44 77 chr11 119276321 119276681 -29506791 + (TA)n Simple_repeat Simple_repeat 1 348 0 2843 88 5 2 chr11 119276684 119277083 -29506389 - MLT2A1 LTR ERVL -44 400 1 447 167 93 72 chr11 119277087 119277184 -29506288 + MLT2B1 LTR ERVL 269 366 -48 225 0 0 0 chr11 119277197 119277222 -29506250 + (TG)n Simple_repeat Simple_repeat 2 26 0 393 356 88 0 chr11 119277255 119277449 -29506023 - L2 LINE L2 -993 2321 2111 23 33 0 0 chr11 119277670 119277700 -29505772 + AT_rich Low_complexity Low_complexity 1 30 0 644 242 90 5 chr11 119278785 119278996 -29504476 - LTR16C LTR ERVL -1 490 262 599 276 77 64 chr11 119279209 119279521 -29503951 - MLT1I LTR MaLR -39 370 55 1809 119 0 16 chr11 119280481 119280733 -29502739 - AluSc SINE Alu -23 286 39 510 288 98 18 chr11 119281163 119281464 -29502008 - MLT1I LTR MaLR 0 409 116 263 259 35 24 chr11 119281742 119281827 -29501645 - MIR3 SINE MIR -1 207 122 502 350 31 23 chr11 119281864 119282121 -29501351 - MIR SINE MIR 0 262 4 233 262 71 0 chr11 119282556 119282640 -29500832 + MLT1K LTR MaLR 394 483 -105 1617 216 25 68 chr11 119283003 119283518 -29499954 - MLT1D LTR MaLR 0 505 13 877 93 78 0 chr11 119284156 119284285 -29499187 - MER85 DNA T2_type 0 139 1 446 234 32 51 chr11 119284317 119284475 -29498997 - L2 LINE L2 -1 3312 3158 987 229 23 0 chr11 119284574 119284788 -29498684 + MER20 DNA MER1_type 1 219 0 528 352 44 26 chr11 119284788 119285061 -29498411 - L2 LINE L2 -434 2880 2603 225 59 0 0 chr11 119285081 119285115 -29498357 + MLT1F1 LTR MaLR 6 39 -528 1936 100 118 18 chr11 119285157 119285497 -29497975 + THE1C LTR MaLR 2 375 0 1543 260 105 8 chr11 119285497 119285982 -29497490 + MLT1F1 LTR MaLR 36 567 0 342 264 108 0 chr11 119285997 119286126 -29497346 + ERVL LTR ERVL 5272 5414 -350 1135 295 87 74 chr11 119286387 119286453 -29497019 - L2 LINE L2 -683 2631 2567 2087 225 103 26 chr11 119286453 119287008 -29496464 + MLT2F LTR ERVL 1 609 -54 192 77 0 0 chr11 119287008 119287034 -29496438 + (CA)n Simple_repeat Simple_repeat 2 27 0 2087 225 103 26 chr11 119287034 119287091 -29496381 + MLT2F LTR ERVL 609 660 -3 1135 295 87 74 chr11 119287091 119287412 -29496060 - L2 LINE L2 -747 2567 2229 1506 207 52 0 chr11 119287412 119287682 -29495790 + AluJb SINE Alu 1 284 -28 1135 295 87 74 chr11 119287682 119287958 -29495514 - L2 LINE L2 -1085 2229 1958 1653 301 126 42 chr11 119288066 119289170 -29494302 + L2 LINE L2 44 1240 -2074 678 323 80 43 chr11 119289276 119289927 -29493545 + L2 LINE L2 1609 2283 -1031 713 180 45 60 chr11 119289939 119290139 -29493333 + MER3 DNA MER1_type 9 205 -4 2016 124 48 38 chr11 119290381 119290752 -29492720 - THE1C LTR MaLR 0 375 1 5732 164 38 25 chr11 119290894 119291397 -29492075 - L1M1 LINE L1 -503 7221 6726 1802 50 0 0 chr11 119291397 119291614 -29491858 + L1PA5 LINE L1 5931 6152 -2 5732 164 38 25 chr11 119291614 119292875 -29490597 - L1M1 LINE L1 -998 6726 5418 * 11450 157 55 22 chr11 119292872 119293010 -29490462 - L1M1 LINE L1 -4583 2982 2850 2060 126 7 7 chr11 119293010 119293312 -29490160 - AluSg SINE Alu -8 302 1 11450 157 55 22 chr11 119293312 119295691 -29487781 - L1M1 LINE L1 -4715 2850 22 253 197 14 14 chr11 119295723 119295794 -29487678 + L1MB7 LINE L1 4222 4292 -1854 2818 184 26 82 chr11 119295842 119296082 -29487390 + LTR8 LTR ERV1 16 268 -423 22725 48 3 3 chr11 119296082 119299718 -29483754 + L1PA5 LINE L1 2510 6153 -1 2818 184 26 82 chr11 119299718 119300070 -29483402 + LTR8 LTR ERV1 268 564 -127 2348 99 0 13 chr11 119300070 119300384 -29483088 + AluSg SINE Alu 1 310 0 2818 184 26 82 chr11 119300384 119300506 -29482966 + LTR8 LTR ERV1 564 691 0 2309 231 23 38 chr11 119300506 119301184 -29482288 + L1MB7 LINE L1 4288 4955 -1191 209 56 0 28 chr11 119301184 119301220 -29482252 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 2309 231 23 38 chr11 119301220 119301311 -29482161 + L1MB7 LINE L1 4955 5046 -1100 2570 199 16 26 chr11 119301371 119301979 -29481493 + L1MB7 LINE L1 5567 6168 -16 3259 181 11 11 chr11 119301979 119302627 -29480845 + L1MD1 LINE L1 5593 6242 0 213 227 0 0 chr11 119302723 119302767 -29480705 + CT-rich Low_complexity Low_complexity 2 45 0 764 173 0 0 chr11 119302902 119303035 -29480437 + AluSq/x SINE Alu 1 133 -179 5381 134 18 20 chr11 119303839 119305011 -29478461 + L1PA16 LINE L1 4987 6158 -8 2206 97 10 13 chr11 119305403 119305713 -29477759 + AluY SINE Alu 3 311 0 184 324 40 64 chr11 119305948 119306121 -29477351 + L2 LINE L2 2955 3123 -190 267 173 0 0 chr11 119306267 119306319 -29477153 + (ATG)n Simple_repeat Simple_repeat 2 53 0 318 315 48 93 chr11 119306421 119306710 -29476762 - L2 LINE L2 -1 3271 2996 1740 181 7 3 chr11 119307127 119307426 -29476046 + AluJo SINE Alu 3 302 -10 2334 229 77 148 chr11 119307431 119308455 -29475017 - L2 LINE L2 -5 3308 2213 1125 206 0 9 chr11 119308455 119308669 -29474803 - AluJo SINE Alu -14 298 87 2334 229 77 148 chr11 119308669 119308996 -29474476 - L2 LINE L2 -1100 2213 1878 1455 119 139 77 chr11 119308996 119309349 -29474123 - THE1C LTR MaLR 0 375 1 2334 229 77 148 chr11 119309349 119309488 -29473984 - L2 LINE L2 -1435 1878 1731 35 0 0 0 chr11 119309537 119309572 -29473900 + AT_rich Low_complexity Low_complexity 1 35 0 411 352 49 6 chr11 119309929 119310091 -29473381 - MIR3 SINE MIR -7 201 33 257 364 33 0 chr11 119310461 119310582 -29472890 - MIR SINE MIR -52 210 86 610 298 49 25 chr11 119311072 119311317 -29472155 + MIR SINE MIR 12 262 0 1724 129 7 14 chr11 119311335 119311621 -29471851 - L1PB2 LINE L1 -1 6866 6583 1565 133 19 11 chr11 119311655 119311918 -29471554 - L1PB2 LINE L1 -22 6845 6581 1032 171 0 4 chr11 119312072 119312328 -29471144 + (TA)n Simple_repeat Simple_repeat 1 256 0 13751 179 33 20 chr11 119312329 119316487 -29466985 - L1PB2 LINE L1 -278 6589 2382 203 184 0 20 chr11 119316490 119316539 -29466933 + (TA)n Simple_repeat Simple_repeat 2 49 0 258 206 0 62 chr11 119316541 119316638 -29466834 + L1MC4 LINE L1 6614 6704 -1338 13224 188 49 14 chr11 119316684 119321330 -29462142 - L1PB2 LINE L1 -360 6507 1742 8551 129 47 7 chr11 119321327 119321760 -29461712 - L1PB2 LINE L1 -5425 1438 1024 * 1910 153 0 0 chr11 119321760 119322110 -29461362 - AluSx SINE Alu 0 350 1 8551 129 47 7 chr11 119322110 119323057 -29460415 - L1PB2 LINE L1 -5839 1024 2 6386 161 22 7 chr11 119323031 119324368 -29459104 - L1PBb LINE L1 -4838 1366 7 * 1009 214 0 0 chr11 119324342 119324524 -29458948 - L1PBa LINE L1 -5227 977 796 * 821 208 13 0 chr11 119324520 119324679 -29458793 - L1PBa LINE L1 -5314 1549 1389 * 5611 204 17 7 chr11 119325044 119325391 -29458081 + L1PB1 LINE L1 4052 4394 -1752 189 0 0 0 chr11 119325391 119325412 -29458060 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 5611 204 17 7 chr11 119325412 119326311 -29457161 + L1PB1 LINE L1 4394 5310 -836 38010 36 82 0 chr11 119326314 119331993 -29451479 + L1PA2 LINE L1 1 6152 -3 5635 117 7 3 chr11 119332003 119332863 -29450609 + L1PB1 LINE L1 5281 6143 -8 22 0 0 0 chr11 119332867 119332889 -29450583 + AT_rich Low_complexity Low_complexity 1 22 0 2518 49 10 0 chr11 119333019 119333327 -29450145 + AluY SINE Alu 1 311 0 2203 110 3 0 chr11 119333448 119333739 -29449733 - AluSp SINE Alu -21 292 1 308 319 105 16 chr11 119335248 119335396 -29448076 + MIR SINE MIR 38 196 -66 225 241 19 0 chr11 119335958 119336012 -29447460 - MIR SINE MIR -120 142 88 1955 141 27 45 chr11 119336048 119336424 -29447048 - THE1C LTR MaLR -6 369 1 481 199 262 7 chr11 119336652 119336793 -29446679 + MER5A DNA MER1_type 10 186 -3 200 33 0 33 chr11 119337200 119337230 -29446242 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 381 211 78 16 chr11 119337804 119337932 -29445540 - L1ME4a LINE L1 -9 6112 5977 506 253 45 39 chr11 119338003 119338208 -29445264 - L1ME4a LINE L1 -364 5757 5582 489 84 0 0 chr11 119338208 119338279 -29445193 + (TG)n Simple_repeat Simple_repeat 2 72 0 506 253 45 39 chr11 119338279 119338305 -29445167 - L1ME4a LINE L1 -539 5582 5558 232 250 31 0 chr11 119338413 119338477 -29444995 - MLT1K LTR MaLR -32 556 491 336 279 31 35 chr11 119338799 119338983 -29444489 - L1ME4a LINE L1 -2270 5515 5322 184 380 33 11 chr11 119339029 119339121 -29444351 - MER5A DNA MER1_type -1 188 95 573 201 106 70 chr11 119341031 119341200 -29442272 + L1MA9 LINE L1 6069 6247 -65 2367 83 3 0 chr11 119341200 119341502 -29441970 + AluY SINE Alu 1 303 -8 573 201 106 70 chr11 119341502 119341531 -29441941 + L1MA9 LINE L1 6247 6274 -38 223 337 24 0 chr11 119341535 119341618 -29441854 + MIR SINE MIR 65 149 -113 321 219 47 31 chr11 119341647 119341775 -29441697 + GA-rich Low_complexity Low_complexity 6 135 0 525 270 72 59 chr11 119342273 119342510 -29440962 - MIR SINE MIR -2 260 21 362 293 5 19 chr11 119342518 119342707 -29440765 + MIR SINE MIR 19 257 -5 213 219 0 0 chr11 119343924 119343997 -29439475 + GA-rich Low_complexity Low_complexity 1 73 0 227 301 21 0 chr11 119344121 119344214 -29439258 + GA-rich Low_complexity Low_complexity 1 95 0 590 282 29 6 chr11 119344668 119344842 -29438630 - MLT1I LTR MaLR -229 180 3 288 384 40 25 chr11 119344860 119345058 -29438414 - L2 LINE L2 -341 2973 2773 330 264 58 33 chr11 119345064 119345185 -29438287 - MLT1I LTR MaLR -58 351 228 1515 85 0 5 chr11 119345257 119345458 -29438014 - L1PA8A LINE L1 -27 6104 5905 212 402 87 8 chr11 119345461 119345588 -29437884 - L2 LINE L2 -532 2782 2646 230 338 40 10 chr11 119346415 119346616 -29436856 + L1MC/D LINE L1 5593 5799 -2009 1036 175 31 58 chr11 119347600 119347823 -29435649 + MER20 DNA MER1_type 1 217 -2 485 266 154 16 chr11 119349170 119349328 -29434144 + MIR SINE MIR 14 203 -59 1155 179 60 112 chr11 119349328 119349713 -29433759 - MLT1A1 LTR MaLR 0 365 1 485 266 154 16 chr11 119349713 119349742 -29433730 + MIR SINE MIR 203 227 -35 243 0 0 0 chr11 119350347 119350374 -29433098 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1661 162 10 30 chr11 119351608 119351910 -29431562 - AluSx SINE Alu -16 296 1 304 356 81 64 chr11 119352157 119352604 -29430868 - L2 LINE L2 -1 3271 2824 2073 42 8 0 chr11 119353358 119353617 -29429855 + L1PA2 LINE L1 5895 6155 0 204 40 0 0 chr11 119353630 119353655 -29429817 + (A)n Simple_repeat Simple_repeat 1 25 0 22 35 0 0 chr11 119353920 119353949 -29429523 + AT_rich Low_complexity Low_complexity 1 29 0 197 234 16 0 chr11 119354076 119354140 -29429332 + (TA)n Simple_repeat Simple_repeat 1 65 0 221 291 18 0 chr11 119354747 119354802 -29428670 + L2 LINE L2 3243 3298 -15 1995 140 7 0 chr11 119354828 119355120 -29428352 - AluSx SINE Alu -18 294 1 2216 114 0 3 chr11 119355385 119355693 -29427779 + AluSx SINE Alu 1 307 -5 554 228 76 43 chr11 119356399 119356583 -29426889 - MLT1J LTR MaLR -91 420 231 299 259 0 12 chr11 119356675 119356756 -29426716 - MLT1L LTR MaLR -535 80 1 22 35 0 0 chr11 119356892 119356921 -29426551 + AT_rich Low_complexity Low_complexity 1 29 0 279 28 0 0 chr11 119358127 119358163 -29425309 + tRNA-His-CAC tRNA tRNA 1 36 -39 217 356 0 45 chr11 119358721 119358853 -29424619 - MIR SINE MIR -108 154 29 728 244 32 0 chr11 119359092 119359248 -29424224 - MIR SINE MIR -31 231 71 201 231 0 0 chr11 119359399 119359438 -29424034 + (CA)n Simple_repeat Simple_repeat 2 40 0 226 342 56 92 chr11 119359690 119359886 -29423586 + L2 LINE L2 2910 3098 -174 405 269 121 50 chr11 119360359 119360541 -29422931 - MIR SINE MIR -49 213 19 197 311 75 0 chr11 119360734 119360825 -29422647 - L3 LINE CR1 -353 1224 1123 400 224 21 94 chr11 119360825 119361017 -29422455 + MER5B DNA MER1_type 1 178 0 197 311 75 0 chr11 119361017 119361031 -29422441 - L3 LINE CR1 -454 1123 1111 228 327 208 0 chr11 119361592 119361693 -29421779 + L2 LINE L2 3175 3296 -17 212 179 0 0 chr11 119361820 119361859 -29421613 + (TTATA)n Simple_repeat Simple_repeat 1 39 0 360 274 84 17 chr11 119363054 119363200 -29420272 + MER5A DNA MER1_type 14 186 -3 235 296 51 41 chr11 119363117 119363215 -29420257 - MER5A DNA MER1_type -87 102 4 * 198 327 159 19 chr11 119363667 119363875 -29419597 + L2 LINE L2 2741 2977 -337 235 265 108 45 chr11 119364359 119364582 -29418890 - L1ME LINE L1 -234 5887 5651 2235 99 7 0 chr11 119364754 119365048 -29418424 - AluSx SINE Alu -16 296 1 680 168 37 47 chr11 119365643 119365834 -29417638 + MER53 DNA DNA 1 189 0 601 273 59 11 chr11 119366209 119366396 -29417076 - MIR SINE MIR -39 223 28 804 286 33 0 chr11 119366853 119367063 -29416409 - MIR SINE MIR -34 228 12 251 303 0 0 chr11 119367065 119367131 -29416341 + MIR SINE MIR 176 241 -21 658 283 33 6 chr11 119367952 119368132 -29415340 + MIR SINE MIR 13 197 -65 2033 145 0 0 chr11 119368264 119368553 -29414919 - AluSc SINE Alu -20 289 1 425 345 84 13 chr11 119368754 119369053 -29414419 - L1ME LINE L1 -303 5818 5499 1457 144 4 62 chr11 119369144 119369400 -29414072 - AluSg SINE Alu -13 297 57 296 167 0 0 chr11 119369501 119369567 -29413905 + L1MC2 LINE L1 6268 6333 -11 293 367 8 8 chr11 119369591 119369711 -29413761 - MER5A DNA MER1_type -52 137 18 511 318 17 17 chr11 119369714 119369893 -29413579 - L3 LINE CR1 -106 1471 1293 664 287 37 28 chr11 119369903 119370119 -29413353 - MIR SINE MIR -37 225 8 199 296 123 12 chr11 119370120 119370201 -29413271 - L3 LINE CR1 -274 1303 1214 623 195 16 79 chr11 119370492 119370682 -29412790 + MLT1D LTR MaLR 2 179 -326 2264 102 3 0 chr11 119371485 119371778 -29411694 + AluSg SINE Alu 1 294 -16 230 81 27 0 chr11 119371822 119371859 -29411613 + (TTTTC)n Simple_repeat Simple_repeat 3 40 0 180 267 44 0 chr11 119371925 119371970 -29411502 - MIR SINE MIR -62 146 100 278 261 120 0 chr11 119372497 119372589 -29410883 + MIR SINE MIR 106 208 -54 1369 164 20 10 chr11 119375807 119376105 -29407367 - L1MA4A LINE L1 -181 6122 5822 279 340 77 0 chr11 119376782 119376938 -29406534 - MIR3 SINE MIR -7 201 34 386 231 100 0 chr11 119379732 119379862 -29403610 - MER95 LTR ERV 0 431 289 1530 26 0 16 chr11 119379863 119380053 -29403419 + L1PA5 LINE L1 5962 6148 -6 204 64 64 64 chr11 119380075 119380122 -29403350 + A-rich Low_complexity Low_complexity 2 48 0 1444 198 0 3 chr11 119380122 119380410 -29403062 - MER95 LTR ERV -144 287 1 2405 113 8 8 chr11 119380739 119381094 -29402378 - THE1A LTR MaLR 0 355 1 25 75 0 0 chr11 119382400 119382453 -29401019 + AT_rich Low_complexity Low_complexity 1 53 0 1014 275 147 27 chr11 119382922 119383329 -29400143 + MLT1J LTR MaLR 3 458 -53 887 183 0 78 chr11 119383806 119383997 -29399475 + MER45A DNA AcHobo 2 177 -1 269 289 27 36 chr11 119385032 119385181 -29398291 - MIR SINE MIR -72 190 1 1719 151 59 48 chr11 119385363 119385735 -29397737 + MSTB1 LTR MaLR 1 376 -56 11630 202 20 16 chr11 119385746 119388599 -29394873 + L1PA15 LINE L1 2330 5193 -972 237 33 0 0 chr11 119388599 119388629 -29394843 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 11630 202 20 16 chr11 119388629 119389485 -29393987 + L1PA15 LINE L1 5193 6044 -121 1366 179 0 4 chr11 119389485 119389729 -29393743 + L1PA15 LINE L1 5921 6165 0 368 94 31 0 chr11 119389733 119389797 -29393675 + MSTB1 LTR MaLR 367 432 0 2065 130 0 20 chr11 119389811 119390112 -29393360 + AluSx SINE Alu 1 295 -17 404 308 8 17 chr11 119390182 119390299 -29393173 - L2 LINE L2 0 3313 3198 294 364 56 26 chr11 119390330 119390525 -29392947 - L2 LINE L2 -493 2821 2621 934 246 138 27 chr11 119392143 119392643 -29390829 + MLT1G1 LTR MaLR 7 595 0 201 351 101 32 chr11 119392772 119392960 -29390512 + L2 LINE L2 2864 3064 -208 2046 143 0 0 chr11 119393009 119393309 -29390163 - AluSx SINE Alu -12 300 1 386 313 8 22 chr11 119393419 119393553 -29389919 - L2 LINE L2 -13 3300 3169 5912 23 10 0 chr11 119393630 119394320 -29389152 - L1PA4 LINE L1 -1 6154 5458 4820 42 14 0 chr11 119394321 119395015 -29388457 + L1PA4 LINE L1 4747 5448 -706 415 297 68 0 chr11 119395032 119395191 -29388281 + MIR SINE MIR 9 176 -62 470 321 95 48 chr11 119395474 119395789 -29387683 + L2 LINE L2 2984 3313 0 190 209 139 0 chr11 119397320 119397363 -29386109 - L2 LINE L2 -5 3267 3219 4408 264 83 31 chr11 119397386 119398106 -29385366 + L1MEc LINE L1 34 715 -5681 2723 65 0 14 chr11 119398106 119398477 -29384995 + L1PA8 LINE L1 5807 6172 0 4408 264 83 31 chr11 119398477 119399700 -29383772 + L1MEc LINE L1 715 2079 -4317 237 206 175 0 chr11 119399677 119399763 -29383709 + L1MEc LINE L1 3137 3207 -3008 * 240 35 0 0 chr11 119399763 119399792 -29383680 + (CA)n Simple_repeat Simple_repeat 2 30 0 237 206 175 0 chr11 119399792 119399831 -29383641 + L1MEc LINE L1 3207 3284 -2931 348 188 0 0 chr11 119399873 119399942 -29383530 + (TG)n Simple_repeat Simple_repeat 2 70 0 273 203 95 0 chr11 119399946 119400020 -29383452 + L1MEc LINE L1 3867 3947 -2268 328 322 127 10 chr11 119400098 119400303 -29383169 - L1MEc LINE L1 -6132 264 36 466 301 73 63 chr11 119400304 119400703 -29382769 - L1MEc LINE L1 -4097 2299 1897 32 43 0 0 chr11 119400826 119400872 -29382600 + AT_rich Low_complexity Low_complexity 1 46 0 292 335 28 6 chr11 119400911 119401090 -29382382 - L1MEc LINE L1 -4701 1695 1513 288 315 22 22 chr11 119401113 119401383 -29382089 - L1MEc LINE L1 -4923 1282 1013 1070 155 88 0 chr11 119401558 119401797 -29381675 - L1MA8 LINE L1 -12 7239 6980 13898 205 70 25 chr11 119401798 119403091 -29380381 - L1MA8 LINE L1 -334 6917 5684 2072 142 13 3 chr11 119403091 119403400 -29380072 + AluSx SINE Alu 1 312 0 13898 205 70 25 chr11 119403400 119408476 -29374996 - L1MA8 LINE L1 -1567 5684 542 195 162 0 0 chr11 119408587 119408624 -29374848 + CT-rich Low_complexity Low_complexity 2 38 0 569 206 0 26 chr11 119408647 119408881 -29374591 + CT-rich Low_complexity Low_complexity 1 228 0 296 250 33 22 chr11 119408882 119408974 -29374498 - L1M4 LINE L1 -1957 4189 4097 1366 288 45 5 chr11 119408978 119409422 -29374050 - L1MEc LINE L1 -5894 502 41 318 266 131 72 chr11 119409439 119409589 -29373883 - HAL1 LINE L1 -40 2467 2327 2387 88 0 3 chr11 119409589 119409895 -29373577 - AluY SINE Alu -6 305 1 318 266 131 72 chr11 119409895 119410034 -29373438 - HAL1 LINE L1 -180 2327 2161 325 128 0 0 chr11 119410043 119410090 -29373382 + Alu SINE Alu 245 291 -11 2300 61 7 7 chr11 119410171 119410466 -29373006 + AluY SINE Alu 6 300 -11 230 106 21 0 chr11 119410681 119410728 -29372744 + (TA)n Simple_repeat Simple_repeat 2 49 0 280 292 37 38 chr11 119410744 119410890 -29372582 + MER5B DNA MER1_type 19 171 -18 273 105 0 0 chr11 119410934 119410972 -29372500 - tRNA-Lys-AAG tRNA tRNA -38 38 1 793 297 147 9 chr11 119412168 119412690 -29370782 - L2 LINE L2 0 3313 2588 224 346 26 0 chr11 119413158 119413236 -29370236 - MER5A DNA MER1_type -52 137 58 1330 155 61 49 chr11 119413670 119413934 -29369538 + AluJo SINE Alu 1 267 -45 216 0 0 0 chr11 119413947 119413971 -29369501 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 297 114 0 0 chr11 119414002 119414046 -29369426 - MLT1G LTR MaLR 0 542 499 1066 118 70 5 chr11 119414046 119414232 -29369240 + L1MA7 LINE L1 6071 6268 -23 850 241 99 11 chr11 119414248 119414504 -29368968 - MLT1G LTR MaLR -66 524 246 553 244 0 9 chr11 119414504 119414619 -29368853 + MER81 DNA DNA 1 114 0 769 254 40 73 chr11 119414619 119414894 -29368578 - MLT1G LTR MaLR -329 266 1 265 161 107 0 chr11 119414905 119414961 -29368511 + MLT1K LTR MaLR 513 574 -14 405 0 0 0 chr11 119415587 119415632 -29367840 + (TTA)n Simple_repeat Simple_repeat 1 45 0 207 0 0 0 chr11 119415667 119415690 -29367782 + (T)n Simple_repeat Simple_repeat 1 23 0 26 0 0 0 chr11 119415790 119415816 -29367656 + AT_rich Low_complexity Low_complexity 1 26 0 2291 115 0 0 chr11 119415845 119416149 -29367323 - AluSx SINE Alu -8 304 1 2177 111 3 3 chr11 119416300 119416606 -29366866 - AluSq SINE Alu -7 306 1 269 51 26 0 chr11 119417299 119417338 -29366134 + (CA)n Simple_repeat Simple_repeat 1 40 0 437 295 17 52 chr11 119417782 119417955 -29365517 + MIR SINE MIR 29 195 -67 287 281 53 9 chr11 119418378 119418492 -29364980 + MIR SINE MIR 25 143 -65 198 103 0 0 chr11 119419205 119419234 -29364238 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 1365 182 4 12 chr11 119419234 119419476 -29363996 - AluJo SINE Alu -32 280 41 2265 165 44 2 chr11 119419812 119420243 -29363229 - L1PA16 LINE L1 -8 6158 5710 348 292 23 62 chr11 119421325 119421455 -29362017 - MER117 DNA MER1_type -72 125 1 1760 168 35 32 chr11 119422125 119422499 -29360973 - THE1C LTR MaLR 0 375 1 206 274 32 16 chr11 119424628 119424690 -29358782 + MIR SINE MIR 45 107 -101 373 297 245 38 chr11 119424735 119425159 -29358313 + L2 LINE L2 1585 2096 -1218 437 341 103 9 chr11 119426518 119426741 -29356731 + MIR SINE MIR 4 247 -15 189 338 0 0 chr11 119426943 119427014 -29356458 + MIR SINE MIR 184 254 -8 192 40 0 0 chr11 119427968 119427993 -29355479 + (TG)n Simple_repeat Simple_repeat 1 25 0 244 182 250 68 chr11 119428710 119428798 -29354674 - MIR SINE MIR -69 193 90 347 256 8 33 chr11 119429160 119429281 -29354191 - MLT1J2 LTR MaLR 0 450 333 287 191 132 15 chr11 119429292 119429360 -29354112 - MLT1J1 LTR MaLR -175 271 196 1298 227 104 15 chr11 119429494 119429829 -29353643 - MLT1A1 LTR MaLR 0 365 1 480 279 177 15 chr11 119429859 119430192 -29353280 - L1ME4a LINE L1 -101 6020 5634 266 270 81 18 chr11 119430613 119430724 -29352748 + MLT1H LTR MaLR 431 548 -1 2219 102 3 0 chr11 119431750 119432043 -29351429 - AluSq SINE Alu -19 294 1 223 296 52 67 chr11 119432631 119432766 -29350706 + MER5B DNA MER1_type 29 161 -17 620 266 47 6 chr11 119434590 119434759 -29348713 - MER5B DNA MER1_type 0 178 3 1253 264 67 42 chr11 119435053 119435684 -29347788 + L2 LINE L2 2662 3312 -1 216 97 0 0 chr11 119435686 119435717 -29347755 + (GGAA)n Simple_repeat Simple_repeat 2 32 0 243 0 0 0 chr11 119437997 119438024 -29345448 + (TCCA)n Simple_repeat Simple_repeat 4 30 0 301 320 58 0 chr11 119438283 119438386 -29345086 + L2 LINE L2 3164 3272 0 197 309 55 55 chr11 119438432 119438542 -29344930 - MIR SINE MIR -62 146 37 528 273 35 21 chr11 119439076 119439219 -29344253 + MIR SINE MIR 86 230 -32 1233 237 145 63 chr11 119439770 119440344 -29343128 + MLT1E3 LTR MaLR 1 621 -3 192 77 0 0 chr11 119440476 119440502 -29342970 + (GA)n Simple_repeat Simple_repeat 1 26 0 496 250 7 62 chr11 119440542 119440686 -29342786 - MLT1F1 LTR MaLR -431 136 1 3885 246 80 46 chr11 119440785 119442669 -29340803 - L1ME3 LINE L1 -6 6225 4231 1571 171 52 0 chr11 119442669 119442955 -29340517 - AluJo SINE Alu -11 301 1 3885 246 80 46 chr11 119442955 119443631 -29339841 - L1ME3 LINE L1 -2000 4231 3579 1964 187 94 25 chr11 119443627 119444029 -29339443 - L1MD2 LINE L1 -476 5883 5510 * 2205 98 86 0 chr11 119444029 119444356 -29339116 + THE1A LTR MaLR 1 355 0 11116 112 9 0 chr11 119444356 119445922 -29337550 + THE1A-int LTR MaLR 1 1580 0 2602 104 3 3 chr11 119445922 119446277 -29337195 + THE1A LTR MaLR 1 355 0 1964 187 94 25 chr11 119446277 119446310 -29337162 - L1MD2 LINE L1 -848 5511 5416 2545 258 22 64 chr11 119446318 119447315 -29336157 - L1ME3 LINE L1 -5410 986 32 2051 199 68 45 chr11 119447591 119448103 -29335369 + MER21B LTR ERV1 321 844 -19 467 284 47 36 chr11 119448677 119448955 -29334517 + L1ME4a LINE L1 5621 5901 -220 2713 118 7 20 chr11 119449348 119449788 -29333684 + L1PB1 LINE L1 5718 6151 0 368 328 41 8 chr11 119450186 119450308 -29333164 + MIR SINE MIR 31 156 -106 219 43 21 64 chr11 119450312 119450359 -29333113 + (TAA)n Simple_repeat Simple_repeat 2 46 0 305 274 94 0 chr11 119450990 119451089 -29332383 - MIR SINE MIR -45 163 56 674 237 74 21 chr11 119451208 119451398 -29332074 - MIR SINE MIR -2 260 61 753 247 23 0 chr11 119451669 119451843 -29331629 - MER5B DNA MER1_type 0 178 1 5234 202 59 47 chr11 119451851 119453289 -29330183 + Charlie1a DNA MER1_type 1 1455 0 31 0 0 0 chr11 119454373 119454404 -29329068 + AT_rich Low_complexity Low_complexity 1 31 0 387 267 166 37 chr11 119455316 119455642 -29327830 - MLT1J2 LTR MaLR -24 426 59 1689 189 13 70 chr11 119455658 119456045 -29327427 + MLT1A1 LTR MaLR 1 365 0 1398 175 7 7 chr11 119456084 119456358 -29327114 - L1MB3 LINE L1 -2 6181 5908 674 113 104 0 chr11 119456411 119456526 -29326946 - L1MB3 LINE L1 -261 5922 5796 3009 91 25 201 chr11 119456540 119456905 -29326567 - Tigger4(Zombi) DNA MER2_type 0 2731 2576 1078 134 65 0 chr11 119456905 119457091 -29326381 + L1PB4 LINE L1 5958 6155 -1 3009 91 25 201 chr11 119457091 119457513 -29325959 - Tigger4(Zombi) DNA MER2_type -155 2576 2082 8722 135 25 12 chr11 119457523 119459029 -29324443 - Tigger4(Zombi) DNA MER2_type -1188 1543 19 1312 152 4 0 chr11 119459058 119459288 -29324184 - L1MB3 LINE L1 -407 5776 5546 430 310 49 43 chr11 119459336 119459409 -29324063 + MIR SINE MIR 74 145 -117 2246 74 37 3 chr11 119459409 119459705 -29323767 + AluY SINE Alu 1 306 -5 430 310 49 43 chr11 119459705 119459815 -29323657 + MIR SINE MIR 145 258 -4 196 191 48 0 chr11 119462658 119462700 -29320772 + MIR SINE MIR 103 146 -116 443 268 110 6 chr11 119463926 119464090 -29319382 - MIR SINE MIR -21 241 61 234 279 126 45 chr11 119464194 119464305 -29319167 - L2 LINE L2 -5 3267 3148 432 293 33 76 chr11 119464513 119464781 -29318691 + MIR3 SINE MIR 14 256 -6 289 283 35 26 chr11 119465178 119465291 -29318181 - MIR SINE MIR -1 261 148 510 261 76 0 chr11 119465393 119465512 -29317960 - MIR SINE MIR -118 144 17 273 327 80 18 chr11 119465669 119465782 -29317690 + MIR3 SINE MIR 15 134 -74 226 268 70 0 chr11 119466585 119466656 -29316816 + MLT1K LTR MaLR 511 586 -2 410 292 75 31 chr11 119467204 119467365 -29316107 + MIR SINE MIR 5 172 -90 203 310 183 11 chr11 119467476 119467760 -29315712 - L2 LINE L2 -343 2971 2639 473 287 62 74 chr11 119467776 119468034 -29315438 + MIR SINE MIR 7 261 -1 288 0 0 0 chr11 119468279 119468311 -29315161 + (TG)n Simple_repeat Simple_repeat 1 32 0 25 0 0 0 chr11 119468663 119468688 -29314784 + AT_rich Low_complexity Low_complexity 1 25 0 914 290 36 4 chr11 119468976 119469224 -29314248 - MIR SINE MIR -1 261 6 198 0 0 0 chr11 119469738 119469760 -29313712 + (A)n Simple_repeat Simple_repeat 1 22 0 462 62 15 0 chr11 119469838 119469903 -29313569 - MLT1B LTR MaLR 0 390 325 900 62 0 0 chr11 119469906 119470019 -29313453 - AluSg/x SINE Alu -11 301 189 1320 172 0 104 chr11 119470019 119470356 -29313116 - MLT1B LTR MaLR -59 331 30 237 232 72 14 chr11 119470758 119470827 -29312645 + MIR SINE MIR 124 196 -66 2222 129 3 0 chr11 119470981 119471284 -29312188 - AluSx SINE Alu -8 304 1 2790 164 2 6 chr11 119471485 119471953 -29311519 + MLT1C LTR MaLR 2 467 0 724 273 168 45 chr11 119472328 119472448 -29311024 - MLT1I LTR MaLR -23 386 282 252 0 0 0 chr11 119472448 119472476 -29310996 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2004 118 11 7 chr11 119472476 119472756 -29310716 - AluSq SINE Alu -32 281 1 724 273 168 45 chr11 119472756 119472968 -29310504 - MLT1I LTR MaLR -126 283 12 2333 193 22 109 chr11 119473542 119473814 -29309658 + MER77 LTR ERV1 1 295 -310 2465 108 63 31 chr11 119473814 119474229 -29309243 + MSTA LTR MaLR 1 428 0 2333 193 22 109 chr11 119474229 119474605 -29308867 + MER77 LTR ERV1 295 592 -13 2293 120 24 24 chr11 119474801 119475176 -29308296 + THE1C LTR MaLR 1 375 0 317 330 123 25 chr11 119475890 119476093 -29307379 + MIR SINE MIR 34 256 -6 240 242 167 8 chr11 119477549 119477681 -29305791 + MER103 DNA DNA 11 163 -3 1366 165 4 0 chr11 119477957 119478205 -29305267 - L1MA6 LINE L1 -644 5656 5408 3212 158 47 10 chr11 119478205 119478816 -29304656 + L1MA6 LINE L1 5659 6296 -4 1961 121 24 3 chr11 119478885 119479183 -29304289 - L1PB1 LINE L1 -2 6149 5846 800 269 47 0 chr11 119480451 119480644 -29302828 - MIR SINE MIR -1 261 60 272 291 143 11 chr11 119481504 119481679 -29301793 - LTR16A1 LTR ERVL -69 388 191 847 62 31 0 chr11 119482437 119482566 -29300906 - L1P LINE L1 -746 5417 5285 346 175 49 70 chr11 119482567 119482710 -29300762 + Charlie5 DNA MER1_type 2356 2495 -117 763 271 65 24 chr11 119484048 119484339 -29299133 - L2 LINE L2 0 3313 3011 253 294 165 28 chr11 119485253 119485362 -29298110 - L2 LINE L2 0 3313 3190 2294 125 0 0 chr11 119485993 119486304 -29297168 + AluSx SINE Alu 1 311 -1 24 32 0 0 chr11 119486388 119486419 -29297053 + AT_rich Low_complexity Low_complexity 1 31 0 255 340 72 0 chr11 119486503 119486600 -29296872 - MIR SINE MIR -151 111 8 278 213 53 13 chr11 119486634 119486709 -29296763 + MIR3 SINE MIR 104 181 -27 2138 215 17 6 chr11 119487866 119488406 -29295066 - L1PA16 LINE L1 -1613 4533 3988 1081 194 0 66 chr11 119488404 119488693 -29294779 + L1PA16 LINE L1 4534 4803 -1343 * 1810 75 0 0 chr11 119488689 119488929 -29294543 - L1PA7 LINE L1 -162 5992 5753 2306 170 15 7 chr11 119488933 119489164 -29294308 + L1PA16 LINE L1 4802 5030 -1136 2339 88 0 13 chr11 119489164 119489470 -29294002 + AluSc SINE Alu 1 302 -7 2306 170 15 7 chr11 119489470 119490031 -29293441 + L1PA16 LINE L1 5030 5601 -565 6743 65 20 2 chr11 119490040 119491218 -29292254 - L1PA7 LINE L1 -10 6144 4958 3309 120 36 13 chr11 119491218 119491767 -29291705 + L1PA16 LINE L1 5596 6157 -9 459 0 0 0 chr11 119492150 119492201 -29291271 + (CA)n Simple_repeat Simple_repeat 2 52 0 405 0 0 0 chr11 119492200 119492245 -29291227 + (GA)n Simple_repeat Simple_repeat 2 46 0 * 595 248 80 66 chr11 119493285 119493587 -29289885 + MLT1I LTR MaLR 104 409 0 470 356 176 14 chr11 119494168 119494719 -29288753 + L2 LINE L2 2127 2766 -548 434 251 108 70 chr11 119494894 119495209 -29288263 + MLT1K LTR MaLR 198 524 -64 334 244 73 98 chr11 119495387 119495592 -29287880 + L2 LINE L2 3114 3313 0 254 314 80 15 chr11 119495602 119495739 -29287733 - MIR SINE MIR -26 236 91 286 222 56 0 chr11 119496710 119496782 -29286690 - MER5C DNA MER1_type -244 80 5 556 286 48 6 chr11 119496797 119496965 -29286507 - MER5B DNA MER1_type -3 175 1 1352 118 11 0 chr11 119497859 119498046 -29285426 + AluY SINE Alu 1 189 -122 216 356 74 34 chr11 119498061 119498210 -29285262 + MIR SINE MIR 43 197 -65 2440 136 43 11 chr11 119498880 119499322 -29284150 - L1MB3 LINE L1 -2 6181 5726 294 245 20 31 chr11 119499638 119499736 -29283736 - LTR45 LTR ERV1 -39 486 390 333 269 83 10 chr11 119501331 119501438 -29282034 - MIR SINE MIR -68 140 37 227 266 9 71 chr11 119504869 119504982 -29278490 - MLT1J2 LTR MaLR -8 442 337 1056 281 11 8 chr11 119505624 119505884 -29277588 + MIR SINE MIR 2 262 0 2508 286 140 59 chr11 119506119 119507760 -29275712 + L2 LINE L2 1455 3242 -71 334 267 117 70 chr11 119509094 119509367 -29274105 - L1ME4a LINE L1 -42 6079 5794 311 282 64 16 chr11 119509392 119509580 -29273892 - L1ME4a LINE L1 -402 5719 5523 255 148 37 0 chr11 119509977 119510031 -29273441 - L1PA16 LINE L1 -9 6157 6102 * 674 241 37 0 chr11 119510023 119510239 -29273233 - L1 LINE L1 -2727 3419 3196 256 342 11 0 chr11 119510659 119510787 -29272685 + CT-rich Low_complexity Low_complexity 1 129 0 515 319 113 4 chr11 119510867 119510954 -29272518 + MIR SINE MIR 9 85 -177 4585 176 65 23 chr11 119510954 119511992 -29271480 + Tigger6a DNA MER2_type 1 1082 -1 515 319 113 4 chr11 119511992 119512133 -29271339 + MIR SINE MIR 85 262 0 284 368 86 7 chr11 119512860 119513144 -29270328 + L2 LINE L2 2746 3049 -223 277 243 162 0 chr11 119513354 119513428 -29270044 + L2 LINE L2 3186 3271 -1 407 51 0 17 chr11 119513771 119513830 -29269642 + (TA)n Simple_repeat Simple_repeat 2 59 0 1757 79 0 8 chr11 119513948 119514189 -29269283 - L1PA8 LINE L1 -1 6171 5933 214 242 30 0 chr11 119514232 119514298 -29269174 + (TA)n Simple_repeat Simple_repeat 1 68 0 21 0 0 0 chr11 119515007 119515028 -29268444 + AT_rich Low_complexity Low_complexity 1 21 0 221 263 118 13 chr11 119516320 119516396 -29267076 + MIR SINE MIR 129 212 -50 464 297 96 32 chr11 119516507 119516726 -29266746 - MIR SINE MIR -1 261 29 2288 106 0 0 chr11 119517146 119517447 -29266025 + AluSq SINE Alu 1 301 -12 2355 164 36 7 chr11 119517823 119518178 -29265294 + LOR1b LTR ERV1 3 375 -86 1957 57 0 0 chr11 119518178 119518422 -29265050 - L1PA4 LINE L1 -1 6154 5911 2355 164 36 7 chr11 119518422 119518512 -29264960 + LOR1b LTR ERV1 375 461 0 663 175 127 42 chr11 119518560 119518749 -29264723 - MER3 DNA MER1_type 0 209 5 211 291 271 16 chr11 119518812 119519056 -29264416 + L2 LINE L2 3008 3313 0 1451 184 110 72 chr11 119519911 119520028 -29263444 - MLT1C LTR MaLR -4 463 352 1733 198 146 69 chr11 119520028 119520795 -29262677 - LTR1B LTR ERV1 0 826 1 1451 184 110 72 chr11 119520795 119521123 -29262349 - MLT1C LTR MaLR -115 352 1 186 277 0 21 chr11 119521127 119521174 -29262298 + MER5A DNA MER1_type 56 101 -88 2252 94 0 0 chr11 119521265 119521542 -29261930 - AluSc SINE Alu -28 281 5 192 365 94 19 chr11 119522708 119522867 -29260605 + MIR SINE MIR 4 174 -88 213 284 98 69 chr11 119524028 119524130 -29259342 + L2 LINE L2 3166 3270 -2 1484 234 61 24 chr11 119524589 119525051 -29258421 - MER20B DNA MER1_type -276 507 29 23 33 0 0 chr11 119525545 119525575 -29257897 + AT_rich Low_complexity Low_complexity 1 30 0 2213 113 0 10 chr11 119525807 119526118 -29257354 + AluSx SINE Alu 1 308 -4 994 260 32 0 chr11 119526178 119526490 -29256982 + L1MC5 LINE L1 5302 5623 -2185 2045 153 6 6 chr11 119526490 119526843 -29256629 + MLT1A1 LTR MaLR 1 353 -12 343 307 11 78 chr11 119526855 119527125 -29256347 + L1MC5 LINE L1 5619 5870 -1938 21 0 0 0 chr11 119527358 119527379 -29256093 + AT_rich Low_complexity Low_complexity 1 21 0 2678 224 58 66 chr11 119527699 119529087 -29254385 + L1MC5 LINE L1 6535 7913 -48 1398 29 0 0 chr11 119529088 119529261 -29254211 - L1PA3 LINE L1 -116 6039 5867 1083 31 0 0 chr11 119529261 119529389 -29254083 + L1PA2 LINE L1 6026 6155 0 22 35 0 0 chr11 119529436 119529465 -29254007 + AT_rich Low_complexity Low_complexity 1 29 0 775 144 7 20 chr11 119529789 119529935 -29253537 - L1MA9 LINE L1 0 6312 6169 341 248 0 0 chr11 119530237 119530338 -29253134 + L1ME1 LINE L1 4174 4274 -1872 2439 231 61 13 chr11 119530339 119531543 -29251929 + L1ME1 LINE L1 4346 5606 -560 1364 204 50 32 chr11 119531543 119531882 -29251590 - MLT1A1 LTR MaLR -20 345 1 1644 196 58 13 chr11 119531882 119532259 -29251213 + L1ME1 LINE L1 5607 6000 -166 1604 203 45 70 chr11 119532259 119532717 -29250755 + MLT2B1 LTR ERVL 1 346 -68 405 0 0 0 chr11 119532717 119532762 -29250710 + (TG)n Simple_repeat Simple_repeat 2 46 0 1604 203 45 70 chr11 119532762 119532798 -29250674 + MLT2B1 LTR ERVL 346 381 -33 514 253 31 0 chr11 119532801 119532963 -29250509 + L1MA10 LINE L1 5986 6315 -10 49 0 0 0 chr11 119532984 119533033 -29250439 + AT_rich Low_complexity Low_complexity 1 49 0 379 355 18 23 chr11 119533300 119533520 -29249952 + MIR SINE MIR 29 247 -15 217 150 33 50 chr11 119534705 119534765 -29248707 + (TAAA)n Simple_repeat Simple_repeat 1 59 0 188 352 110 22 chr11 119534950 119535041 -29248431 - L2 LINE L2 -24 3248 3150 197 266 53 71 chr11 119535506 119535619 -29247853 + L2 LINE L2 3103 3213 -100 304 322 42 42 chr11 119536364 119536482 -29246990 + L2 LINE L2 3146 3263 -9 1066 322 24 59 chr11 119536497 119537011 -29246461 + L3 LINE CR1 585 1081 -496 2017 81 0 4 chr11 119537011 119537259 -29246213 - AluSq SINE Alu -33 280 34 1066 322 24 59 chr11 119537259 119537284 -29246188 + L3 LINE CR1 1081 1105 -472 439 227 0 0 chr11 119537343 119537431 -29246041 - MER5A DNA MER1_type -90 99 12 626 376 45 5 chr11 119537486 119537890 -29245582 + L3 LINE CR1 1155 1574 -3 209 354 122 14 chr11 119538206 119538353 -29245119 + L3b LINE CR1 1398 1560 -23 303 337 0 0 chr11 119539077 119539166 -29244306 - MIR SINE MIR -118 144 56 375 322 78 6 chr11 119539378 119539558 -29243914 - MIR SINE MIR -14 248 56 244 287 13 120 chr11 119540032 119540182 -29243290 + MIR SINE MIR 79 212 -50 1187 212 27 27 chr11 119540353 119540766 -29242706 + MLT2B1 LTR ERVL 1 458 -57 287 256 152 3 chr11 119540792 119540912 -29242560 + MIR SINE MIR 16 154 -58 3339 134 21 4 chr11 119542292 119542851 -29240621 + L1PB4 LINE L1 5586 6154 -2 247 146 21 0 chr11 119542867 119542915 -29240557 - Tigger1 DNA MER2_type -518 1900 1852 661 92 0 0 chr11 119542916 119543014 -29240458 + AluSp/q SINE Alu 214 311 -2 10061 130 19 53 chr11 119543014 119544878 -29238594 - Tigger1 DNA MER2_type -583 1835 35 896 153 11 21 chr11 119545892 119546081 -29237391 + L1MB3 LINE L1 5995 6181 -2 428 302 20 50 chr11 119546190 119546392 -29237080 + MIR SINE MIR 17 212 -50 208 377 8 39 chr11 119546548 119546678 -29236794 - L2 LINE L2 -10 3262 3137 531 279 129 10 chr11 119546807 119547008 -29236464 + MIR SINE MIR 24 248 -14 368 321 119 6 chr11 119547009 119547168 -29236304 - MIR SINE MIR -65 197 21 436 298 35 66 chr11 119547358 119547556 -29235916 - MIR SINE MIR -56 206 15 2175 122 0 0 chr11 119549975 119550271 -29233201 + AluSx SINE Alu 1 296 -16 247 278 0 0 chr11 119550298 119550352 -29233120 - L2 LINE L2 -18 3295 3242 543 316 55 0 chr11 119551412 119551630 -29231842 + MER102a DNA MER1_type 101 330 0 508 335 102 4 chr11 119553435 119553671 -29229801 + MIR SINE MIR 3 261 -1 996 263 153 18 chr11 119555130 119555908 -29227564 - L2 LINE L2 0 3313 2432 1311 62 6 0 chr11 119555917 119556078 -29227394 - AluY SINE Alu -12 299 138 300 120 0 0 chr11 119557024 119557074 -29226398 + (CA)n Simple_repeat Simple_repeat 2 51 0 1455 184 27 0 chr11 119558185 119558479 -29224993 + L1MB4 LINE L1 5873 6174 -6 309 295 75 17 chr11 119558784 119558957 -29224515 - HAL1 LINE L1 -96 2411 2229 366 65 0 252 chr11 119559481 119559546 -29223926 - MADE1 DNA Mariner 0 80 51 1811 123 72 11 chr11 119559546 119559823 -29223649 + AluSx SINE Alu 2 295 -17 366 65 0 252 chr11 119559823 119559864 -29223608 - MADE1 DNA Mariner -29 51 1 675 37 0 0 chr11 119559868 119559950 -29223522 + (TTGG)n Simple_repeat Simple_repeat 2 83 0 7365 165 24 38 chr11 119560340 119562638 -29220834 + L1MA8 LINE L1 3943 6200 -91 308 241 0 51 chr11 119563515 119563594 -29219878 + L1MEd LINE L1 614 688 -5431 2194 229 45 30 chr11 119563661 119563736 -29219736 + L1ME2 LINE L1 5513 5585 -579 2592 54 0 6 chr11 119563736 119564049 -29219423 - AluY SINE Alu 0 311 1 2194 229 45 30 chr11 119564049 119564566 -29218906 + L1ME2 LINE L1 5585 6114 -50 219 309 0 29 chr11 119565518 119565586 -29217886 - MIR SINE MIR -193 69 4 361 255 130 84 chr11 119566178 119566617 -29216855 + MLT1I LTR MaLR 68 541 -8 356 225 92 14 chr11 119566617 119566759 -29216713 - L1ME4a LINE L1 -9 6112 5960 23919 28 0 2 chr11 119566847 119570482 -29212990 - L1PA2 LINE L1 0 6155 2524 222 156 0 0 chr11 119570501 119570546 -29212926 + CT-rich Low_complexity Low_complexity 1 45 0 182 259 99 25 chr11 119572899 119572980 -29210492 - MIR SINE MIR -65 197 111 1385 237 13 35 chr11 119572980 119573352 -29210120 + MLT1A2 LTR MaLR 1 364 -10 4696 109 14 1 chr11 119574159 119574854 -29208618 + L1PA14 LINE L1 5455 6158 -3 561 246 60 25 chr11 119575717 119575916 -29207556 + MIR SINE MIR 57 262 0 260 270 127 48 chr11 119575926 119576052 -29207420 + L2 LINE L2 3102 3237 -35 206 232 36 0 chr11 119576052 119576108 -29207364 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 2029 112 60 0 chr11 119576686 119576971 -29206501 + AluY SINE Alu 1 302 -9 277 128 0 0 chr11 119578012 119578051 -29205421 - U6 snRNA snRNA -67 40 2 255 146 0 42 chr11 119578537 119578585 -29204887 - L2 LINE L2 -12 3301 3256 215 327 112 47 chr11 119580110 119580324 -29203148 + MIR SINE MIR 20 247 -15 364 297 229 4 chr11 119582886 119583122 -29200350 + HAL1 LINE L1 404 692 -1815 300 231 231 0 chr11 119583147 119583264 -29200208 + HAL1 LINE L1 733 876 -1631 207 0 0 0 chr11 119583281 119583304 -29200168 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 28 29 0 0 chr11 119583373 119583408 -29200064 + AT_rich Low_complexity Low_complexity 1 35 0 1142 273 153 6 chr11 119583419 119583961 -29199511 + HAL1 LINE L1 1062 1683 -824 1886 125 27 109 chr11 119583962 119584338 -29199134 + THE1B LTR MaLR 20 364 0 234 220 143 110 chr11 119584338 119584373 -29199099 + HAL1 LINE L1 1668 1700 -807 1675 215 122 8 chr11 119584373 119584563 -29198909 + Charlie1b DNA MER1_type 1 168 -2593 1855 144 0 7 chr11 119584563 119584841 -29198631 - AluSx SINE Alu -32 280 5 1675 215 122 8 chr11 119584841 119585119 -29198353 + Charlie1b DNA MER1_type 168 522 -1 234 220 143 110 chr11 119585119 119585174 -29198298 + HAL1 LINE L1 1700 1761 -746 2109 130 3 7 chr11 119585219 119585526 -29197946 + AluSx SINE Alu 1 306 -6 21 0 0 0 chr11 119586009 119586030 -29197442 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 8 0 chr11 119586330 119586390 -29197082 + AT_rich Low_complexity Low_complexity 1 23 0 2158 237 15 53 chr11 119586392 119587424 -29196048 + L1MA7 LINE L1 2277 2980 -4516 4995 189 21 11 chr11 119587427 119588728 -29194744 + L1MA7 LINE L1 6385 7699 -11 723 159 30 0 chr11 119588726 119588858 -29194614 + L1MB1 LINE L1 2879 3014 -4551 * 680 151 0 0 chr11 119588867 119588973 -29194499 + AluJ SINE Alu 17 122 -190 1775 179 0 0 chr11 119588995 119589268 -29194204 + AluSx SINE Alu 1 273 -39 258 156 0 0 chr11 119589269 119589314 -29194158 + GA-rich Low_complexity Low_complexity 6 50 0 915 199 0 45 chr11 119589315 119589398 -29194074 + AluJ SINE Alu 132 217 -95 1986 129 5 69 chr11 119589398 119589777 -29193695 - THE1A LTR MaLR 0 355 1 11521 84 23 5 chr11 119589777 119591329 -29192143 - THE1A-int LTR MaLR 0 1580 1 1733 134 50 59 chr11 119591329 119591687 -29191785 - THE1A LTR MaLR 0 355 1 915 199 0 45 chr11 119591687 119591777 -29191695 + AluJ SINE Alu 214 299 -13 6699 215 39 31 chr11 119591860 119592386 -29191086 + L1MB1 LINE L1 3115 3635 -3930 2291 97 0 0 chr11 119592386 119592676 -29190796 + AluSq SINE Alu 1 290 -23 6699 215 39 31 chr11 119592676 119594395 -29189077 + L1MB1 LINE L1 3635 5397 -2168 644 189 177 6 chr11 119594402 119594566 -29188906 - MER58 DNA MER1_type -2219 201 10 22 0 0 0 chr11 119595358 119595380 -29188092 + AT_rich Low_complexity Low_complexity 1 22 0 2555 173 26 69 chr11 119596367 119596579 -29186893 + L1MB1 LINE L1 5389 5608 -1957 2501 176 14 0 chr11 119596579 119596999 -29186473 - MSTB LTR MaLR 0 426 1 2555 173 26 69 chr11 119596999 119597467 -29186005 + L1MB1 LINE L1 5608 6040 -1525 * 4084 146 23 38 chr11 119597458 119597798 -29185674 - L1MA4 LINE L1 -5 6300 5956 1776 176 0 3 chr11 119597798 119598087 -29185385 - AluJb SINE Alu -24 288 1 4084 146 23 38 chr11 119598087 119598780 -29184692 - L1MA4 LINE L1 -349 5956 5348 * 4730 163 24 53 chr11 119598779 119600393 -29183079 + L1MB1 LINE L1 6024 7587 0 3503 157 62 94 chr11 119600382 119600483 -29182989 + L1MB8 LINE L1 4970 5073 -1105 * 1991 111 0 4 chr11 119600483 119600753 -29182719 + AluSg SINE Alu 21 289 -21 3503 157 62 94 chr11 119600753 119601883 -29181589 + L1MB8 LINE L1 5073 6153 -25 449 237 7 72 chr11 119601929 119602068 -29181404 + MER96 DNA MER1_type? 46 175 0 213 257 81 43 chr11 119602240 119602377 -29181095 - MIR SINE MIR 0 262 33 257 329 110 14 chr11 119603904 119604050 -29179422 - L3 LINE CR1 -91 1486 1327 188 271 35 71 chr11 119604188 119604273 -29179199 + MIR SINE MIR 117 198 -64 1327 280 93 19 chr11 119604487 119604586 -29178886 - L2 LINE L2 -11 3302 3212 1962 152 0 7 chr11 119604586 119604883 -29178589 - AluSx SINE Alu -15 297 3 1327 280 93 19 chr11 119604883 119605550 -29177922 - L2 LINE L2 -101 3212 2421 238 387 96 13 chr11 119605588 119605818 -29177654 - L2 LINE L2 -468 2846 2598 9945 225 28 16 chr11 119606610 119607839 -29175633 - L1MC1 LINE L1 -5 6328 5115 1679 238 6 6 chr11 119607839 119608204 -29175268 - MLT1A1 LTR MaLR 0 365 1 9945 225 28 16 chr11 119608204 119610971 -29172501 - L1MC1 LINE L1 -1218 5115 2281 2038 140 0 13 chr11 119610971 119611279 -29172193 - AluSx SINE Alu -8 304 1 9945 225 28 16 chr11 119611279 119611431 -29172041 - L1MC1 LINE L1 -4052 2281 2132 1727 250 46 68 chr11 119611438 119612335 -29171137 + L1MA8 LINE L1 7 2049 -4981 * 2284 192 54 30 chr11 119612330 119612782 -29170690 + L1MA8 LINE L1 3612 4204 -2902 2135 127 3 3 chr11 119612782 119613081 -29170391 + AluSx SINE Alu 1 299 -13 2284 192 54 30 chr11 119613081 119613357 -29170115 + L1MA8 LINE L1 4204 4472 -2634 * 3082 112 26 7 chr11 119613355 119613893 -29169579 - L1 LINE L1 -1303 4843 4296 2916 176 46 5 chr11 119613894 119614501 -29168971 + L1MA8 LINE L1 4474 5105 -2001 1636 110 0 8 chr11 119614501 119614738 -29168734 + THE1B LTR MaLR 130 364 0 4820 160 28 8 chr11 119614739 119616415 -29167057 + L1MA8 LINE L1 5522 7227 -24 881 223 5 5 chr11 119616496 119616684 -29166788 - L1PB4 LINE L1 -14 6142 5955 1402 227 12 31 chr11 119616724 119616876 -29166596 + L1MB8 LINE L1 5763 5916 -262 2621 138 29 2 chr11 119616876 119617297 -29166175 + MSTB1 LTR MaLR 1 432 0 1402 227 12 31 chr11 119617297 119617562 -29165910 + L1MB8 LINE L1 5916 6172 -6 192 125 0 0 chr11 119617601 119617633 -29165839 + (TC)n Simple_repeat Simple_repeat 2 33 0 198 0 0 0 chr11 119617633 119617655 -29165817 + (CA)n Simple_repeat Simple_repeat 1 22 0 902 222 127 75 chr11 119617754 119618273 -29165199 - MLT1H1 LTR MaLR 0 555 10 2239 110 0 3 chr11 119618273 119618573 -29164899 - AluSx SINE Alu -13 299 1 357 230 0 0 chr11 119618586 119618660 -29164812 + MER112 DNA MER1_type 186 259 -1 424 246 107 86 chr11 119619954 119620048 -29163424 + MIR SINE MIR 57 148 -114 1339 112 79 5 chr11 119620048 119620262 -29163210 - MER30 DNA MER1_type 0 230 1 424 246 107 86 chr11 119620262 119620354 -29163118 + MIR SINE MIR 148 247 -15 697 322 107 76 chr11 119620839 119621500 -29161972 - L3 LINE CR1 -51 1526 845 367 147 44 0 chr11 119621602 119621670 -29161802 - MLT1A2 LTR MaLR -296 78 8 506 296 53 6 chr11 119621823 119621992 -29161480 + MIR SINE MIR 21 197 -65 370 326 31 36 chr11 119621999 119622192 -29161280 + LTR67 LTR ERVL 2 193 -364 242 233 10 87 chr11 119622307 119622410 -29161062 + LTR67 LTR ERVL 352 446 -111 228 115 76 19 chr11 119622444 119622601 -29160871 + (TA)n Simple_repeat Simple_repeat 1 166 0 22 0 0 0 chr11 119622608 119622630 -29160842 + AT_rich Low_complexity Low_complexity 1 22 0 268 197 76 0 chr11 119622665 119622731 -29160741 + LTR67 LTR ERVL 487 557 0 378 333 68 20 chr11 119622858 119623005 -29160467 + L2 LINE L2 3102 3255 -17 329 343 91 6 chr11 119623017 119623192 -29160280 - L3 LINE CR1 -1034 543 354 183 80 0 0 chr11 119623207 119623232 -29160240 + (CA)n Simple_repeat Simple_repeat 2 26 0 319 291 82 5 chr11 119623782 119624002 -29159470 - L1ME LINE L1 -354 5767 5531 1146 185 27 4 chr11 119624079 119624338 -29159134 - L1MA8 LINE L1 -1 6290 6026 382 310 47 41 chr11 119624432 119624965 -29158507 - L1ME LINE L1 -1313 4833 4298 282 340 55 84 chr11 119625207 119625587 -29157885 + L2 LINE L2 2843 3211 -61 189 438 27 0 chr11 119625742 119625854 -29157618 - L3 LINE CR1 -1439 138 24 23 0 0 0 chr11 119626012 119626035 -29157437 + AT_rich Low_complexity Low_complexity 1 23 0 580 309 88 12 chr11 119626375 119626705 -29156767 + L2 LINE L2 2404 2758 -556 547 301 41 10 chr11 119626811 119627006 -29156466 + MIR SINE MIR 7 206 -56 256 274 12 24 chr11 119628208 119628292 -29155180 + L2 LINE L2 2423 2505 -809 214 167 0 0 chr11 119628297 119628339 -29155133 + (CA)n Simple_repeat Simple_repeat 2 43 0 357 353 86 20 chr11 119628538 119628782 -29154690 + L2 LINE L2 2702 2961 -353 2115 133 0 10 chr11 119628850 119629152 -29154320 + AluSx SINE Alu 1 299 -13 181 261 228 0 chr11 119629176 119629268 -29154204 + L2 LINE L2 3200 3312 -1 200 341 96 43 chr11 119630070 119630278 -29153194 + L2 LINE L2 358 576 -2738 260 315 19 37 chr11 119631089 119631197 -29152275 + MIR3 SINE MIR 1 106 -102 261 0 0 0 chr11 119631751 119631780 -29151692 + (TG)n Simple_repeat Simple_repeat 1 29 0 303 146 0 0 chr11 119631780 119631835 -29151637 + (GA)n Simple_repeat Simple_repeat 2 56 0 433 66 11 55 chr11 119632504 119632595 -29150877 + (GGAA)n Simple_repeat Simple_repeat 2 88 0 547 268 71 112 chr11 119633649 119634156 -29149316 + L2 LINE L2 2828 3313 0 240 276 66 13 chr11 119634193 119634269 -29149203 - MIR SINE MIR -109 153 74 449 268 56 14 chr11 119634286 119634428 -29149044 + MIR SINE MIR 45 192 -70 7630 25 3 0 chr11 119635645 119637045 -29146427 - L1PA3 LINE L1 -5 6150 4746 212 286 95 0 chr11 119637098 119637161 -29146311 - L2 LINE L2 0 3313 3245 4721 164 29 15 chr11 119637222 119638180 -29145292 - L1MD1 LINE L1 0 6242 5271 3176 122 8 17 chr11 119638194 119638718 -29144754 - THE1-int LTR MaLR -379 1201 683 2380 239 17 18 chr11 119638738 119639165 -29144307 - L1MD1 LINE L1 -1882 4264 3837 2356 62 0 29 chr11 119639165 119639472 -29144000 - AluY SINE Alu -13 298 1 2380 239 17 18 chr11 119639472 119639754 -29143718 - L1MD1 LINE L1 -2309 3837 3556 608 253 90 3 chr11 119639753 119640042 -29143430 + L1M4 LINE L1 3341 3654 -2492 * 2697 209 89 2 chr11 119640043 119640626 -29142846 + MER21B LTR ERV1 11 644 -219 290 173 53 0 chr11 119640645 119640720 -29142752 - L1MD1 LINE L1 -3135 3011 2933 2127 109 3 43 chr11 119640720 119641088 -29142384 + MER4A LTR ERV1 1 353 -311 395 134 30 0 chr11 119641129 119641196 -29142276 + MER4A LTR ERV1 355 423 -241 337 188 266 39 chr11 119641215 119641369 -29142103 + MER4C LTR ERV1 277 465 0 25 0 0 0 chr11 119641374 119641399 -29142073 + AT_rich Low_complexity Low_complexity 1 25 0 742 250 32 58 chr11 119641406 119641417 -29142055 - L1MD1 LINE L1 -3247 2899 2889 1317 190 94 57 chr11 119641417 119641769 -29141703 - MLT1A1 LTR MaLR 0 365 1 742 250 32 58 chr11 119641769 119642069 -29141403 - L1MD1 LINE L1 -3257 2889 2596 2231 117 3 0 chr11 119642178 119642487 -29140985 - AluSx SINE Alu -2 310 1 2273 174 46 11 chr11 119643277 119644038 -29139434 + LTR1B LTR ERV1 1 826 0 229 369 71 14 chr11 119644382 119644523 -29138949 - MIR3 SINE MIR -27 181 33 444 236 89 0 chr11 119647026 119647149 -29136323 + MER103 DNA DNA 31 164 -2 1611 165 135 68 chr11 119647164 119647637 -29135835 + MLT1D LTR MaLR 1 505 0 636 241 146 6 chr11 119647944 119648102 -29135370 - MER5A DNA MER1_type 0 189 10 1227 55 0 0 chr11 119648173 119648319 -29135153 + AluY SINE Alu 156 301 -10 21 36 0 0 chr11 119648454 119648482 -29134990 + AT_rich Low_complexity Low_complexity 1 28 0 2455 167 90 19 chr11 119648914 119649435 -29134037 - MER74A LTR ERVL 0 558 1 232 241 0 0 chr11 119649729 119649787 -29133685 + MLT1D-int LTR MaLR 14 71 -1300 1956 182 36 28 chr11 119650016 119650565 -29132907 + MLT2A2 LTR ERVL 1 554 0 35871 90 10 5 chr11 119650565 119656153 -29127319 + HERVL-A2 LTR ERVL 1 5654 0 1721 168 30 87 chr11 119656153 119656728 -29126744 + MLT2A2 LTR ERVL 1 554 0 310 193 11 45 chr11 119657391 119657479 -29125993 + MLT1H LTR MaLR 89 173 -376 313 333 39 26 chr11 119657963 119658119 -29125353 + MIR SINE MIR 105 262 0 273 282 94 50 chr11 119658157 119658427 -29125045 - L1ME LINE L1 -522 5599 5319 517 145 122 0 chr11 119658547 119658678 -29124794 + Charlie5 DNA MER1_type 2477 2623 0 262 209 45 30 chr11 119661359 119661426 -29122046 - L3 LINE CR1 0 1577 1510 648 90 0 0 chr11 119661919 119662045 -29121427 + AluY SINE Alu 195 320 0 196 376 40 0 chr11 119662627 119662728 -29120744 + L3 LINE CR1 585 689 -888 930 208 0 12 chr11 119662781 119662949 -29120523 - FRAM SINE Alu 0 166 1 190 235 12 71 chr11 119663127 119663212 -29120260 + L2 LINE L2 1135 1214 -2100 437 351 106 23 chr11 119663265 119663784 -29119688 + L2 LINE L2 2004 2565 -749 215 265 20 0 chr11 119663772 119663821 -29119651 + L2 LINE L2 3223 3272 0 * 271 344 122 17 chr11 119663821 119664001 -29119471 - L3 LINE CR1 -1163 414 216 555 286 97 5 chr11 119664623 119664819 -29118653 - MIR SINE MIR -2 260 47 362 287 166 58 chr11 119664963 119665186 -29118286 - Charlie8 DNA MER1_type -68 273 204 1138 145 5 26 chr11 119665186 119665379 -29118093 + MER5A DNA MER1_type 1 189 0 362 287 166 58 chr11 119665379 119665608 -29117864 - Charlie8 DNA MER1_type -137 204 1 4477 124 107 7 chr11 119665877 119666628 -29116844 + LTR1B LTR ERV1 1 826 0 565 340 113 25 chr11 119666854 119667256 -29116216 - L2 LINE L2 -279 2993 2554 2033 145 0 23 chr11 119667614 119667917 -29115555 + AluSx SINE Alu 1 296 -16 375 291 99 0 chr11 119669603 119669744 -29113728 - MIR SINE MIR -50 212 58 286 290 78 8 chr11 119669854 119669996 -29113476 - MIR SINE MIR -63 145 1 24 32 0 0 chr11 119671594 119671625 -29111847 + AT_rich Low_complexity Low_complexity 1 31 0 321 26 0 0 chr11 119672105 119672143 -29111329 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 933 246 21 39 chr11 119672365 119672698 -29110774 + MER46C DNA MER2_type 11 337 -1 398 256 16 89 chr11 119673183 119673374 -29110098 + MER5B DNA MER1_type 2 178 0 267 295 162 38 chr11 119674131 119674341 -29109131 + L2 LINE L2 2997 3232 -81 225 65 0 0 chr11 119674373 119674404 -29109068 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 205 318 114 23 chr11 119674440 119674528 -29108944 + L2 LINE L2 3210 3305 -8 193 306 97 0 chr11 119675329 119675401 -29108071 - L2 LINE L2 -61 3211 3133 1523 184 57 3 chr11 119675475 119675758 -29107714 + AluJb SINE Alu 1 298 -14 412 305 15 35 chr11 119675971 119676168 -29107304 - L2 LINE L2 -455 2859 2667 1566 328 82 24 chr11 119676255 119677334 -29106138 - L2 LINE L2 -37 3276 2130 302 304 144 19 chr11 119677563 119677826 -29105646 - L2 LINE L2 -1033 2281 1986 3360 156 8 7 chr11 119678054 119678669 -29104803 + L1MB2 LINE L1 5534 6149 -22 23 0 0 0 chr11 119678677 119678700 -29104772 + AT_rich Low_complexity Low_complexity 1 23 0 722 167 72 83 chr11 119679632 119679908 -29103564 - L1MC5 LINE L1 -215 7746 7474 378 106 76 0 chr11 119679967 119680033 -29103439 - MLT1B LTR MaLR 0 390 320 417 230 79 24 chr11 119680170 119680296 -29103176 - L2 LINE L2 0 3313 3181 21 0 0 0 chr11 119680836 119680857 -29102615 + AT_rich Low_complexity Low_complexity 1 21 0 2198 229 179 18 chr11 119681419 119682161 -29101311 + L2 LINE L2 1590 2451 -863 1248 263 50 3 chr11 119682245 119682602 -29100870 + ERVL LTR ERVL 1839 2212 -3552 1008 224 80 0 chr11 119682608 119682845 -29100627 + MIR SINE MIR 2 257 -5 485 303 0 7 chr11 119682855 119683000 -29100472 + L2 LINE L2 2460 2603 -711 803 273 72 18 chr11 119683001 119683373 -29100099 + L2 LINE L2 2775 3172 -141 261 294 0 0 chr11 119683405 119683473 -29099999 + MLT1J2 LTR MaLR 264 331 -119 302 277 49 36 chr11 119683995 119684219 -29099253 + HAL1 LINE L1 1139 1365 -1142 200 162 54 0 chr11 119685349 119685386 -29098086 + GA-rich Low_complexity Low_complexity 2 40 0 1150 87 0 69 chr11 119685580 119685753 -29097719 - AluSg/x SINE Alu -14 298 138 2259 90 3 26 chr11 119685758 119686068 -29097404 - AluSx SINE Alu -9 303 1 221 222 19 19 chr11 119686601 119686655 -29096817 - MIR SINE MIR -5 257 204 1672 176 10 21 chr11 119686677 119686967 -29096505 - AluJb SINE Alu -25 287 1 335 323 30 15 chr11 119688136 119688269 -29095203 + MIR SINE MIR 47 181 -81 442 326 70 52 chr11 119690942 119691013 -29092459 + HAL1b LINE L1 429 497 -851 1682 152 34 10 chr11 119691013 119691309 -29092163 - AluJb SINE Alu -9 303 1 442 326 70 52 chr11 119691309 119691581 -29091891 + HAL1b LINE L1 497 778 -570 2329 122 112 7 chr11 119692023 119692441 -29091031 - Tigger3b DNA MER2_type 0 1231 770 4372 129 13 50 chr11 119692445 119693229 -29090243 - L1PA15 LINE L1 -2 6163 5409 4690 189 13 19 chr11 119693236 119694283 -29089189 + L1PA15 LINE L1 4351 5391 -755 3923 134 47 23 chr11 119694287 119695033 -29088439 - Tigger3b DNA MER2_type -467 764 1 22 0 0 0 chr11 119695046 119695068 -29088404 + AT_rich Low_complexity Low_complexity 1 22 0 196 164 0 36 chr11 119695068 119695115 -29088357 + (TA)n Simple_repeat Simple_repeat 1 47 -6 2131 109 0 3 chr11 119695115 119695400 -29088072 - AluY SINE Alu -27 284 1 196 164 0 36 chr11 119695400 119695407 -29088065 + (TA)n Simple_repeat Simple_repeat 47 53 0 22 56 0 0 chr11 119695654 119695690 -29087782 + AT_rich Low_complexity Low_complexity 1 36 0 28 29 0 0 chr11 119695746 119695781 -29087691 + AT_rich Low_complexity Low_complexity 1 35 0 256 287 60 6 chr11 119695807 119695974 -29087498 + L1M4 LINE L1 2691 2866 -3280 251 111 0 22 chr11 119695979 119696024 -29087448 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 355 327 7 13 chr11 119696052 119696205 -29087267 + L1M4 LINE L1 2877 3028 -3118 287 258 0 0 chr11 119696588 119696650 -29086822 - MIR SINE MIR -28 234 173 23 0 0 0 chr11 119697226 119697249 -29086223 + AT_rich Low_complexity Low_complexity 1 23 0 2067 128 3 7 chr11 119698001 119698307 -29085165 + AluSc SINE Alu 1 305 -4 1860 290 57 45 chr11 119698841 119699751 -29083721 + L1ME1 LINE L1 248 1177 -5430 2125 147 0 0 chr11 119699751 119700050 -29083422 - AluSx SINE Alu -13 299 1 1860 290 57 45 chr11 119700050 119700341 -29083131 + L1ME1 LINE L1 1177 1463 -5144 326 280 97 31 chr11 119700332 119700425 -29083047 + L1ME1 LINE L1 1301 1386 -5040 * 378 0 0 0 chr11 119700425 119700467 -29083005 + (CA)n Simple_repeat Simple_repeat 2 43 0 326 280 97 31 chr11 119700467 119700630 -29082842 + L1ME1 LINE L1 1386 1574 -4852 960 249 123 21 chr11 119700634 119701089 -29082383 - MLT1F LTR MaLR -4 538 1 1257 244 70 11 chr11 119701154 119701596 -29081876 + L1ME1 LINE L1 1823 2290 -4317 618 250 5 21 chr11 119701600 119701775 -29081697 + L1ME1 LINE L1 2623 2796 -3630 2101 146 3 0 chr11 119701775 119702083 -29081389 + AluSq SINE Alu 1 309 -4 618 250 5 21 chr11 119702083 119702099 -29081373 + L1ME1 LINE L1 2796 2811 -3615 601 215 30 0 chr11 119702096 119702231 -29081241 + L1ME1 LINE L1 5740 5878 -568 * 2245 136 60 29 chr11 119702237 119702650 -29080822 - MSTB LTR MaLR 0 426 1 2369 143 30 6 chr11 119702661 119703105 -29080367 - MSTB-int LTR MaLR -14 1637 1125 1761 165 47 11 chr11 119703103 119703467 -29080005 - MSTB-int LTR MaLR -1274 377 1 * 2288 148 70 5 chr11 119703467 119703867 -29079605 - MSTB LTR MaLR 0 426 1 775 243 126 11 chr11 119703913 119704176 -29079296 + L1ME1 LINE L1 5912 6204 -240 233 141 203 16 chr11 119704180 119704244 -29079228 + LTR40a LTR ERVL 1 76 -443 589 321 30 22 chr11 119704347 119704615 -29078857 + LTR40a LTR ERVL 124 393 -126 337 208 40 56 chr11 119704734 119704859 -29078613 + L1ME1 LINE L1 6199 6321 -125 260 192 41 14 chr11 119704860 119704933 -29078539 + L1ME1 LINE L1 6366 6440 -6 2184 106 0 7 chr11 119704933 119705225 -29078247 - AluSg SINE Alu -20 290 1 28 0 0 0 chr11 119705225 119705253 -29078219 + AT_rich Low_complexity Low_complexity 1 28 0 1754 151 27 14 chr11 119705523 119705815 -29077657 + AluJo SINE Alu 1 296 -16 2268 116 0 3 chr11 119705815 119706118 -29077354 - AluSq SINE Alu -11 302 1 391 312 143 36 chr11 119706774 119707053 -29076419 + L2 LINE L2 3005 3313 0 26 0 0 0 chr11 119707110 119707136 -29076336 + AT_rich Low_complexity Low_complexity 1 26 0 430 228 40 40 chr11 119707679 119707780 -29075692 - MIR SINE MIR -81 127 27 2528 136 22 5 chr11 119708154 119708522 -29074950 + THE1C LTR MaLR 2 375 0 588 268 8 128 chr11 119708848 119708967 -29074505 + MIR SINE MIR 9 80 -182 611 173 19 0 chr11 119708967 119709071 -29074401 + L1PB4 LINE L1 6042 6147 -9 588 268 8 128 chr11 119709071 119709216 -29074256 + MIR SINE MIR 80 241 -21 2308 91 0 25 chr11 119709268 119709587 -29073885 - AluSq SINE Alu -2 311 1 1943 167 0 3 chr11 119709939 119710239 -29073233 + AluSx SINE Alu 1 299 -13 617 302 116 9 chr11 119710375 119710607 -29072865 - MIR SINE MIR 0 262 6 612 316 18 32 chr11 119710792 119711070 -29072402 + LTR16B LTR ERVL 177 450 -14 986 122 0 0 chr11 119711510 119711641 -29071831 + AluSq/x SINE Alu 1 131 -181 784 148 0 8 chr11 119711641 119711763 -29071709 + AluJb SINE Alu 182 302 -10 492 191 7 14 chr11 119712437 119712578 -29070894 + GA-rich Low_complexity Low_complexity 2 141 0 2332 104 0 0 chr11 119712639 119712937 -29070535 - AluSx SINE Alu -14 298 1 309 341 12 58 chr11 119713085 119713258 -29070214 + L3 LINE CR1 1098 1262 -315 1441 177 4 33 chr11 119713811 119714082 -29069390 - AluJo SINE Alu -31 281 19 802 176 0 0 chr11 119714131 119714250 -29069222 + FRAM SINE Alu 1 117 -59 260 176 47 12 chr11 119714250 119714335 -29069137 + (TA)n Simple_repeat Simple_repeat 1 88 0 390 292 110 19 chr11 119714947 119715101 -29068371 - MIR3 SINE MIR -24 184 17 489 298 38 6 chr11 119715159 119715317 -29068155 + MIR SINE MIR 71 233 -29 359 250 55 23 chr11 119715449 119715577 -29067895 + L1MC4 LINE L1 7909 8040 -2 628 329 79 69 chr11 119716337 119716756 -29066716 - L2 LINE L2 0 3272 2850 497 279 68 6 chr11 119717030 119717191 -29066281 - MIR SINE MIR -77 185 15 340 342 10 42 chr11 119718087 119718280 -29065192 - L3 LINE CR1 -52 1525 1339 230 267 33 0 chr11 119719000 119719060 -29064412 + MIR SINE MIR 63 124 -138 1962 284 133 31 chr11 119721789 119722061 -29061411 + L2 LINE L2 2196 2439 -874 2020 132 13 13 chr11 119722061 119722364 -29061108 - AluSx SINE Alu -9 303 1 1962 284 133 31 chr11 119722364 119722950 -29060522 + L2 LINE L2 2439 3164 -149 2082 87 69 0 chr11 119722950 119723226 -29060246 + AluSx SINE Alu 1 295 -17 1962 284 133 31 chr11 119723226 119723388 -29060084 + L2 LINE L2 3164 3308 -5 523 206 29 44 chr11 119723712 119723848 -29059624 - MIR SINE MIR -21 241 108 698 247 29 6 chr11 119723904 119724078 -29059394 + MER5B DNA MER1_type 1 178 0 390 226 94 55 chr11 119724113 119724294 -29059178 - L1MC5 LINE L1 -747 7214 7027 2277 102 0 3 chr11 119724295 119724589 -29058883 - AluSq SINE Alu -20 293 1 1536 215 118 55 chr11 119724775 119725249 -29058223 - MLT1D LTR MaLR -1 504 1 1549 208 43 53 chr11 119725250 119725668 -29057804 + MLT2D LTR ERVL 1 414 0 1739 116 48 7 chr11 119725809 119726136 -29057336 - Tigger4(Zombi) DNA MER2_type -1 2730 3 387 60 0 0 chr11 119726136 119726186 -29057286 + (TG)n Simple_repeat Simple_repeat 1 50 0 255 61 0 0 chr11 119726573 119726606 -29056866 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2161 113 0 0 chr11 119727276 119727580 -29055892 + AluSx SINE Alu 1 304 0 1610 203 40 43 chr11 119728032 119728407 -29055065 - MLT1A2 LTR MaLR 0 374 1 198 0 0 0 chr11 119728487 119728509 -29054963 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 461 256 86 8 chr11 119728636 119728753 -29054719 + L2 LINE L2 3187 3312 -1 218 264 139 0 chr11 119729501 119729573 -29053899 - MIR3 SINE MIR -40 168 87 344 275 140 30 chr11 119730529 119730858 -29052614 - L2 LINE L2 -225 3088 2683 2298 228 62 56 chr11 119731012 119731951 -29051521 + L1MC4 LINE L1 6721 7896 -146 253 183 0 17 chr11 119731954 119732014 -29051458 + L1MC4 LINE L1 7983 8041 -1 451 284 82 39 chr11 119732020 119732252 -29051220 - L2 LINE L2 -612 2702 2461 1049 87 17 12 chr11 119732252 119732425 -29051047 + (GGAA)n Simple_repeat Simple_repeat 4 177 0 1498 11 0 11 chr11 119732425 119732607 -29050865 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 277 234 43 53 chr11 119732607 119732701 -29050771 - L2 LINE L2 -833 2481 2389 2810 185 15 0 chr11 119732730 119733201 -29050271 + LTR42 LTR ERVL 18 495 0 785 242 58 38 chr11 119733216 119733456 -29050016 - L2 LINE L2 -930 2384 2140 23 0 0 0 chr11 119733461 119733484 -29049988 + AT_rich Low_complexity Low_complexity 1 23 0 2140 136 7 3 chr11 119733518 119733862 -29049610 + AluSx SINE Alu 1 345 0 3560 149 56 8 chr11 119733862 119734467 -29049005 + L1MC1 LINE L1 5700 6333 0 4638 165 48 31 chr11 119735679 119735850 -29047622 + L1MB3 LINE L1 5009 5176 -1007 1972 161 0 7 chr11 119735850 119736160 -29047312 + AluSq SINE Alu 1 308 -5 4638 165 48 31 chr11 119736160 119737141 -29046331 + L1MB3 LINE L1 5176 6180 -3 2049 139 7 3 chr11 119737149 119737459 -29046013 + AluSx SINE Alu 1 311 -1 23 54 0 0 chr11 119737522 119737559 -29045913 + AT_rich Low_complexity Low_complexity 1 37 0 547 232 51 19 chr11 119737564 119737741 -29045731 + L1ME2 LINE L1 4125 4306 -1840 372 238 139 0 chr11 119739175 119739276 -29044196 + FLAM_C SINE Alu 3 117 -16 226 130 19 19 chr11 119739276 119739330 -29044142 + CT-rich Low_complexity Low_complexity 2 55 0 2997 216 58 47 chr11 119739330 119739598 -29043874 + L1ME2 LINE L1 4444 4708 -1456 2048 133 0 7 chr11 119739598 119739891 -29043581 + AluSx SINE Alu 1 291 -21 2997 216 58 47 chr11 119739891 119740855 -29042617 + L1ME2 LINE L1 4708 5699 -465 2165 121 3 0 chr11 119740855 119741152 -29042320 + AluSx SINE Alu 1 298 -14 2997 216 58 47 chr11 119741152 119741481 -29041991 + L1ME2 LINE L1 5699 6023 -141 607 128 0 49 chr11 119741481 119741583 -29041889 - AluJb SINE Alu -5 307 211 279 308 8 17 chr11 119741583 119741703 -29041769 + L1ME1 LINE L1 6013 6131 -35 * 1023 103 0 146 chr11 119741676 119741922 -29041550 + L1M2 LINE L1 5232 5441 -818 5923 133 108 19 chr11 119741935 119742919 -29040553 - MER11C LTR ERVK 0 1071 1 1784 168 7 7 chr11 119742919 119743217 -29040255 + AluJo SINE Alu 9 306 -6 662 320 71 28 chr11 119743217 119743539 -29039933 + L1MC4a LINE L1 4741 5076 -1070 24 0 0 0 chr11 119743594 119743618 -29039854 + AT_rich Low_complexity Low_complexity 1 24 0 230 233 0 17 chr11 119743733 119743793 -29039679 + L1ME4a LINE L1 5355 5413 -892 522 299 99 42 chr11 119743812 119744362 -29039110 + L1ME4a LINE L1 5439 6028 -93 291 208 13 78 chr11 119744442 119744466 -29039006 + MER116 DNA Mariner 4 28 -52 4144 118 3 60 chr11 119744466 119745113 -29038359 - MER4B LTR ERV1 0 610 1 291 208 13 78 chr11 119745113 119745165 -29038307 + MER116 DNA Mariner 28 75 -5 1148 196 66 47 chr11 119745935 119746252 -29037220 + L1MC4 LINE L1 7720 8042 0 1268 186 8 32 chr11 119746282 119746529 -29036943 + AluJo SINE Alu 42 282 -30 2456 84 3 0 chr11 119746961 119747270 -29036202 - AluSp SINE Alu -3 310 1 184 294 0 0 chr11 119748167 119748218 -29035254 + L2 LINE L2 3263 3313 0 1140 261 127 39 chr11 119748559 119749128 -29034344 - L2 LINE L2 -1 3312 2680 1296 271 38 0 chr11 119749194 119749541 -29033931 - L2 LINE L2 -1623 1691 1332 1460 118 0 19 chr11 119750178 119750390 -29033082 + AluSg/x SINE Alu 83 290 -20 2030 138 3 0 chr11 119751560 119751857 -29031615 - AluSx SINE Alu -14 298 1 301 168 47 0 chr11 119752072 119752179 -29031293 + (TAGA)n Simple_repeat Simple_repeat 2 113 0 1519 190 0 0 chr11 119752562 119752825 -29030647 + AluJo SINE Alu 1 263 -49 192 77 0 0 chr11 119752829 119752855 -29030617 + (TC)n Simple_repeat Simple_repeat 2 27 0 681 277 56 86 chr11 119754331 119755006 -29028466 + L1MC4a LINE L1 5256 5910 -1898 26 30 0 0 chr11 119755017 119755050 -29028422 + AT_rich Low_complexity Low_complexity 1 33 0 2165 110 0 0 chr11 119755077 119755394 -29028078 + AluSx SINE Alu 1 317 0 2219 129 0 3 chr11 119755454 119755765 -29027707 + AluSx SINE Alu 1 310 -2 29 78 0 0 chr11 119755895 119755959 -29027513 + AT_rich Low_complexity Low_complexity 1 64 0 413 270 24 26 chr11 119755959 119756139 -29027333 + HAL1b LINE L1 1189 1340 -8 34 55 0 0 chr11 119756195 119756250 -29027222 + AT_rich Low_complexity Low_complexity 1 55 0 1855 135 21 4 chr11 119756412 119756740 -29026732 - AluSq SINE Alu 0 333 1 774 164 14 48 chr11 119756742 119756888 -29026584 - FLAM_C SINE Alu -1 142 2 367 353 108 59 chr11 119759057 119759252 -29024220 + L2 LINE L2 2844 3028 -244 1864 159 20 23 chr11 119759252 119759553 -29023919 - AluJb SINE Alu -12 300 1 367 353 108 59 chr11 119759553 119759765 -29023707 + L2 LINE L2 3028 3271 -1 920 211 0 0 chr11 119760113 119760269 -29023203 + FRAM SINE Alu 1 156 -10 495 97 53 0 chr11 119760274 119760388 -29023084 + (TA)n Simple_repeat Simple_repeat 2 121 0 303 285 114 73 chr11 119761544 119761667 -29021805 - L2 LINE L2 0 3272 3145 588 318 14 33 chr11 119762205 119762416 -29021056 + MIR SINE MIR 32 238 -24 258 337 148 10 chr11 119762437 119762538 -29020934 + L2 LINE L2 3108 3222 -50 211 265 176 0 chr11 119762720 119762788 -29020684 - L2 LINE L2 0 3313 3234 2482 131 31 24 chr11 119762837 119763063 -29020409 - MSTA LTR MaLR -2 426 194 2259 78 7 0 chr11 119763063 119763346 -29020126 - AluSc SINE Alu -20 289 5 2482 131 31 24 chr11 119763346 119763539 -29019933 - MSTA LTR MaLR -234 194 4 3101 148 32 84 chr11 119763544 119764273 -29019199 - LTR8 LTR ERV1 0 691 1 2006 172 70 2 chr11 119764495 119764896 -29018576 - MSTA LTR MaLR 0 428 1 533 231 213 12 chr11 119765713 119765882 -29017590 + MIR SINE MIR 16 218 -44 223 218 40 109 chr11 119765891 119765992 -29017480 - MIR SINE MIR -36 226 133 27 29 0 0 chr11 119766767 119766801 -29016671 + AT_rich Low_complexity Low_complexity 1 34 0 1026 280 33 70 chr11 119767196 119767707 -29015765 + LTR67 LTR ERVL 1 492 -65 25 75 0 0 chr11 119767769 119767822 -29015650 + AT_rich Low_complexity Low_complexity 1 53 0 2221 123 7 0 chr11 119768211 119768520 -29014952 + AluSx SINE Alu 1 311 -1 941 99 45 29 chr11 119768632 119768821 -29014651 + L1MA8 LINE L1 6095 6298 -2 1873 112 42 28 chr11 119769216 119769503 -29013969 - AluSx SINE Alu -21 291 1 207 342 17 68 chr11 119769530 119769647 -29013825 - MIR SINE MIR -132 130 20 516 273 50 0 chr11 119770186 119770307 -29013165 - MIR SINE MIR -29 233 107 * 542 251 110 21 chr11 119770282 119770473 -29012999 - L2 LINE L2 -695 2619 2412 312 264 0 23 chr11 119770489 119770576 -29012896 + L2 LINE L2 2303 2387 -927 203 340 0 0 chr11 119770743 119770790 -29012682 + L2 LINE L2 3142 3188 -84 211 221 42 63 chr11 119770798 119770893 -29012579 - MIR SINE MIR -8 254 162 366 250 131 0 chr11 119770907 119770991 -29012481 + MIR SINE MIR 38 132 -130 233 356 112 19 chr11 119770999 119771204 -29012268 - L2 LINE L2 -181 3091 2868 441 299 184 69 chr11 119771342 119771734 -29011738 + L2 LINE L2 2867 3303 -10 261 347 124 4 chr11 119771788 119772013 -29011459 - L2 LINE L2 -1059 2255 2004 22 0 0 0 chr11 119772312 119772334 -29011138 + AT_rich Low_complexity Low_complexity 1 22 0 332 310 17 26 chr11 119772469 119772585 -29010887 - L1MC4 LINE L1 -1314 6728 6614 428 269 11 104 chr11 119772669 119772851 -29010621 - L2 LINE L2 -219 3094 2930 6107 103 36 2 chr11 119774052 119775208 -29008264 - L1PA14 LINE L1 -12 6149 4927 757 228 54 4 chr11 119775234 119775617 -29007855 + L1ME2 LINE L1 5071 5479 -685 210 37 0 0 chr11 119775639 119775666 -29007806 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 2039 105 40 0 chr11 119775666 119775943 -29007529 - AluSx SINE Alu -24 288 1 675 288 10 27 chr11 119775950 119776245 -29007227 + L1ME2 LINE L1 5831 6120 -44 265 225 44 97 chr11 119776369 119776501 -29006971 - MIR3 SINE MIR -24 184 53 394 252 206 18 chr11 119777635 119777853 -29005619 + MER112 DNA MER1_type 2 260 0 1948 144 11 3 chr11 119778169 119778453 -29005019 + AluSx SINE Alu 4 289 -23 192 77 0 0 chr11 119779592 119779618 -29003854 + (CA)n Simple_repeat Simple_repeat 2 27 0 280 292 81 43 chr11 119779643 119779804 -29003668 - MIR SINE MIR -84 178 12 330 323 127 9 chr11 119781149 119781369 -29002103 - MIR SINE MIR -14 248 3 655 199 50 6 chr11 119782830 119783011 -29000461 + MER53 DNA DNA 1 189 0 281 214 33 143 chr11 119783328 119783510 -28999962 + MLT1L LTR MaLR 6 167 -344 292 198 18 7 chr11 119783751 119783844 -28999628 + MLT1J LTR MaLR 446 509 -2 2446 156 29 5 chr11 119783939 119784355 -28999117 + MSTB LTR MaLR 1 426 0 181 262 115 0 chr11 119784880 119784941 -28998531 + MIR SINE MIR 74 141 -121 456 274 41 33 chr11 119785174 119785360 -28998112 + MIR SINE MIR 41 222 -40 2244 124 0 0 chr11 119785572 119785878 -28997594 + AluSg SINE Alu 1 306 -4 233 75 25 0 chr11 119786773 119786813 -28996659 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 429 225 196 36 chr11 119786926 119787064 -28996408 - MER5B DNA MER1_type -9 169 10 245 341 16 71 chr11 119788628 119788754 -28994718 + MIR SINE MIR 2 120 -142 397 341 55 18 chr11 119788879 119789096 -28994376 + MIR SINE MIR 1 225 -37 2209 141 30 28 chr11 119790908 119791271 -28992201 - THE1B LTR MaLR 0 364 1 634 272 71 21 chr11 119791530 119791769 -28991703 - MIR SINE MIR 0 262 12 280 290 181 38 chr11 119792053 119792446 -28991026 + L2 LINE L2 1682 2130 -1184 189 310 20 128 chr11 119792578 119792975 -28990497 - L2 LINE L2 -92 3180 2827 301 299 209 34 chr11 119793123 119793357 -28990115 + L2 LINE L2 2230 2504 -810 1908 177 3 3 chr11 119793509 119793808 -28989664 + AluJo SINE Alu 1 299 -13 388 295 88 45 chr11 119793996 119794398 -28989074 - MLT1H LTR MaLR 0 549 90 209 243 297 18 chr11 119794516 119794627 -28988845 + MIR SINE MIR 120 261 -1 2002 174 0 0 chr11 119794678 119794983 -28988489 - AluSx SINE Alu -7 305 1 21 57 0 0 chr11 119795321 119795356 -28988116 + AT_rich Low_complexity Low_complexity 1 35 0 393 296 181 7 chr11 119795903 119796173 -28987299 - MLT1K LTR MaLR -127 461 145 1464 264 103 42 chr11 119798618 119799396 -28984076 - HAL1 LINE L1 -6 2501 1677 205 164 0 180 chr11 119799515 119799576 -28983896 - L2 LINE L2 0 3313 3264 646 296 121 5 chr11 119800163 119800362 -28983110 + MIR SINE MIR 6 227 -35 292 227 53 0 chr11 119800531 119800606 -28982866 - MIR SINE MIR -106 156 78 3153 154 14 64 chr11 119801477 119802121 -28981351 + LTR9 LTR ERV1 1 612 0 2197 137 21 13 chr11 119803837 119804216 -28979256 - LTR8 LTR ERV1 0 691 310 992 124 0 78 chr11 119804257 119804424 -28979048 - LTR8 LTR ERV1 -502 189 37 2352 122 40 83 chr11 119804424 119804868 -28978604 + MER61B LTR ERV1 1 425 0 992 124 0 78 chr11 119804868 119804893 -28978579 - LTR8 LTR ERV1 -654 37 12 325 355 66 24 chr11 119805040 119805251 -28978221 + MIR SINE MIR 27 246 -16 340 328 146 0 chr11 119806365 119806536 -28976936 + MIR SINE MIR 49 244 -18 1768 171 42 0 chr11 119806548 119806834 -28976638 + AluSx SINE Alu 1 298 -14 185 297 188 30 chr11 119807214 119807315 -28976157 - L2 LINE L2 -1 3312 3196 257 318 128 20 chr11 119807369 119807517 -28975955 + L2 LINE L2 3109 3272 0 506 250 83 12 chr11 119808576 119808744 -28974728 - MIR SINE MIR -13 249 70 749 162 54 0 chr11 119808833 119808981 -28974491 - L1MC1 LINE L1 -5 6328 6173 228 37 0 0 chr11 119808983 119809010 -28974462 + tRNA-Gln-CAG tRNA tRNA 17 43 -32 181 167 0 0 chr11 119810598 119810628 -28972844 - L2 LINE L2 -7 3306 3277 220 109 65 0 chr11 119810755 119810801 -28972671 + A-rich Low_complexity Low_complexity 4 52 0 706 164 68 0 chr11 119810886 119811032 -28972440 + L1MC1 LINE L1 6173 6328 -5 234 281 9 0 chr11 119812069 119812140 -28971332 + CT-rich Low_complexity Low_complexity 2 118 0 335 315 62 39 chr11 119812164 119812294 -28971178 + MIR SINE MIR 21 153 -109 371 260 0 4 chr11 119812575 119812709 -28970763 + MIR SINE MIR 75 251 -11 339 150 0 0 chr11 119812712 119812772 -28970700 + (TAG)n Simple_repeat Simple_repeat 3 62 0 297 360 93 12 chr11 119812958 119813119 -28970353 + MIR3 SINE MIR 31 204 -4 672 219 20 0 chr11 119813617 119813768 -28969704 + L1MA10 LINE L1 6173 6326 -8 808 339 51 19 chr11 119815133 119815508 -28967964 + MLT1K LTR MaLR 183 569 -19 1164 225 78 21 chr11 119816854 119817187 -28966285 - L1MC4 LINE L1 -993 7049 6698 845 254 50 79 chr11 119817412 119817893 -28965579 + L1MC4 LINE L1 7104 7570 -472 315 118 20 0 chr11 119817919 119817970 -28965502 + L1PA15 LINE L1 4730 4781 -1365 313 217 0 0 chr11 119818103 119818172 -28965300 + L1 LINE L1 4791 4859 -1287 5770 142 7 10 chr11 119818231 119819487 -28963985 + L1PA15 LINE L1 4854 6159 -6 748 220 84 7 chr11 119819628 119819901 -28963571 + L1MC4 LINE L1 7749 8042 0 357 288 187 7 chr11 119820790 119820929 -28962543 + MER5A DNA MER1_type 26 189 0 1533 217 70 27 chr11 119821011 119821453 -28962019 + MLT1C LTR MaLR 7 467 0 296 311 117 0 chr11 119821453 119821556 -28961916 - MER5B DNA MER1_type -62 116 2 2538 58 0 3 chr11 119822234 119822545 -28960927 + AluY SINE Alu 1 310 -1 220 357 63 8 chr11 119823278 119823404 -28960068 - MIR3 SINE MIR -46 162 30 3903 90 21 2 chr11 119823730 119824287 -28959185 + L1PA13 LINE L1 5596 6163 0 5970 198 37 30 chr11 119824582 119826813 -28956659 + L1MB7 LINE L1 3946 6184 0 430 307 88 26 chr11 119827236 119827464 -28956008 + HAL1 LINE L1 984 1225 -1282 516 344 107 22 chr11 119827509 119827864 -28955608 - LTR16A LTR ERVL 0 450 66 362 219 184 10 chr11 119827918 119828114 -28955358 + HAL1 LINE L1 1110 1339 -1168 * 400 219 0 0 chr11 119828113 119828186 -28955286 - HAL1 LINE L1 -1138 1369 1297 7059 240 78 38 chr11 119828395 119831452 -28952020 + L1M2b LINE L1 2 3248 -3961 11920 227 32 18 chr11 119831480 119836683 -28946789 + L1PA16 LINE L1 2 5143 -1726 387 0 0 0 chr11 119836683 119836726 -28946746 + (CA)n Simple_repeat Simple_repeat 2 44 0 11920 227 32 18 chr11 119836726 119838476 -28944996 + L1PA16 LINE L1 5143 6868 -1 3499 220 39 7 chr11 119838476 119839425 -28944047 + L1M2b LINE L1 3237 4215 -2993 21 0 0 0 chr11 119839614 119839635 -28943837 + AT_rich Low_complexity Low_complexity 1 21 0 342 304 62 25 chr11 119839810 119839971 -28943501 + L1ME LINE L1 5563 5729 -392 399 41 0 0 chr11 119840418 119840467 -28943005 + (CA)n Simple_repeat Simple_repeat 2 50 0 274 344 19 45 chr11 119842406 119842616 -28940856 + MIR SINE MIR 6 262 0 291 318 68 15 chr11 119843744 119843876 -28939596 - MIR SINE MIR -121 141 3 385 289 89 36 chr11 119844541 119844733 -28938739 + MIR SINE MIR 22 216 -46 22 56 0 0 chr11 119844786 119844822 -28938650 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr11 119844888 119844916 -28938556 + AT_rich Low_complexity Low_complexity 1 28 0 1704 170 60 46 chr11 119847620 119847648 -28935824 - THE1C LTR MaLR 0 375 349 6600 58 1 1 chr11 119847648 119848477 -28934995 + L1PA6 LINE L1 5326 6154 0 1704 170 60 46 chr11 119848477 119848818 -28934654 - THE1C LTR MaLR -26 349 1 693 304 48 28 chr11 119848870 119849120 -28934352 - MIR SINE MIR -5 257 3 2166 125 47 39 chr11 119849524 119849885 -28933587 - THE1B LTR MaLR 0 364 1 10808 94 2 4 chr11 119849885 119851331 -28932141 - THE1B-int LTR MaLR 0 1580 138 279 318 0 45 chr11 119851712 119851800 -28931672 - MIR SINE MIR -158 104 21 318 50 0 0 chr11 119852461 119852501 -28930971 + (CA)n Simple_repeat Simple_repeat 1 40 0 3247 153 65 4 chr11 119852501 119853058 -28930414 - MER6A DNA MER2_type -2 603 13 2300 129 28 8 chr11 119853090 119853447 -28930025 - THE1B LTR MaLR 0 364 1 245 321 111 19 chr11 119854134 119854296 -28929176 - L1ME LINE L1 -530 5591 5415 188 241 35 17 chr11 119854878 119854936 -28928536 + MIR SINE MIR 2 60 -202 2015 120 69 29 chr11 119855073 119855423 -28928049 + THE1B LTR MaLR 1 364 0 4077 74 14 0 chr11 119855423 119855980 -28927492 + THE1B-int LTR MaLR 1 565 -1015 1031 115 9 13 chr11 119856081 119857617 -28925855 + HSATII Satellite Satellite 1 1529 0 945 94 8 0 chr11 119857994 119858121 -28925351 - AluYb8 SINE Alu -179 139 12 318 302 129 28 chr11 119858219 119858474 -28924998 + L1ME2 LINE L1 5875 6155 -9 7801 52 27 1 chr11 119859274 119860725 -28922747 + L1PA3 LINE L1 4344 5836 -319 225 200 50 0 chr11 119860867 119860947 -28922525 + (TA)n Simple_repeat Simple_repeat 1 84 0 12462 80 3 0 chr11 119862266 119864013 -28919459 + L1P LINE L1 391 2143 -4003 939 231 52 0 chr11 119866377 119866589 -28916883 - MIR SINE MIR -31 231 9 255 248 73 29 chr11 119866964 119867101 -28916371 - L1ME4a LINE L1 -2 6119 5977 742 288 42 0 chr11 119867469 119867684 -28915788 - MIR SINE MIR -16 246 23 5842 112 60 6 chr11 119867694 119868846 -28914626 + Tigger3b DNA MER2_type 1 1231 0 238 301 126 25 chr11 119869076 119869315 -28914157 - L1ME4a LINE L1 -347 5774 5512 1269 128 0 0 chr11 119869615 119869787 -28913685 + AluSg/x SINE Alu 126 297 -15 215 308 110 33 chr11 119870055 119870146 -28913326 + L2 LINE L2 3199 3296 -17 896 115 8 0 chr11 119870174 119870304 -28913168 - FLAM_C SINE Alu -1 132 2 5440 143 71 39 chr11 119870368 119871509 -28911963 + Tigger1 DNA MER2_type 1 1178 -1240 2349 90 3 0 chr11 119871509 119871809 -28911663 - AluSp SINE Alu -12 301 1 190 294 0 0 chr11 119872704 119872755 -28910717 + L2 LINE L2 3263 3313 0 1135 260 127 39 chr11 119873171 119873740 -28909732 - L2 LINE L2 -1 3312 2680 1312 271 38 0 chr11 119873806 119874153 -28909319 - L2 LINE L2 -1623 1691 1332 1463 118 0 19 chr11 119874792 119875004 -28908468 + AluSg/x SINE Alu 83 290 -20 2048 135 3 0 chr11 119876174 119876471 -28907001 - AluSx SINE Alu -14 298 1 301 168 47 0 chr11 119876686 119876793 -28906679 + (TAGA)n Simple_repeat Simple_repeat 2 113 0 1529 190 0 0 chr11 119877176 119877439 -28906033 + AluJo SINE Alu 1 263 -49 192 77 0 0 chr11 119877443 119877469 -28906003 + (TC)n Simple_repeat Simple_repeat 2 27 0 438 295 50 79 chr11 119878931 119879592 -28903880 + L1MC4a LINE L1 5256 5897 -1911 26 30 0 0 chr11 119879617 119879650 -28903822 + AT_rich Low_complexity Low_complexity 1 33 0 2161 110 0 0 chr11 119879677 119879994 -28903478 + AluSx SINE Alu 1 317 0 2230 129 0 3 chr11 119880054 119880365 -28903107 + AluSx SINE Alu 1 310 -2 214 244 37 0 chr11 119880504 119880586 -28902886 + (TA)n Simple_repeat Simple_repeat 1 85 0 352 270 20 20 chr11 119880587 119880739 -28902733 + HAL1b LINE L1 1189 1340 -8 34 55 0 0 chr11 119880795 119880850 -28902622 + AT_rich Low_complexity Low_complexity 1 55 0 1864 135 21 4 chr11 119881012 119881332 -28902140 - AluSq SINE Alu 0 325 1 718 163 14 48 chr11 119881334 119881481 -28901991 - FLAM_C SINE Alu -1 142 1 367 353 108 59 chr11 119883649 119883844 -28899628 + L2 LINE L2 2844 3028 -244 1864 159 20 23 chr11 119883844 119884145 -28899327 - AluJb SINE Alu -12 300 1 367 353 108 59 chr11 119884145 119884357 -28899115 + L2 LINE L2 3028 3271 -1 920 211 0 0 chr11 119884705 119884861 -28898611 + FRAM SINE Alu 1 156 -10 495 97 53 0 chr11 119884866 119884980 -28898492 + (TA)n Simple_repeat Simple_repeat 2 121 0 303 285 114 73 chr11 119886136 119886259 -28897213 - L2 LINE L2 0 3272 3145 588 318 14 33 chr11 119886797 119887008 -28896464 + MIR SINE MIR 32 238 -24 258 337 148 10 chr11 119887029 119887130 -28896342 + L2 LINE L2 3108 3222 -50 211 265 176 0 chr11 119887312 119887380 -28896092 - L2 LINE L2 0 3313 3234 2482 131 31 24 chr11 119887429 119887655 -28895817 - MSTA LTR MaLR -2 426 194 2248 81 7 0 chr11 119887655 119887938 -28895534 - AluSc SINE Alu -20 289 5 2482 131 31 24 chr11 119887938 119888131 -28895341 - MSTA LTR MaLR -234 194 4 3081 149 32 84 chr11 119888136 119888865 -28894607 - LTR8 LTR ERV1 0 691 1 2006 172 70 2 chr11 119889087 119889488 -28893984 - MSTA LTR MaLR 0 428 1 533 231 213 12 chr11 119890305 119890474 -28892998 + MIR SINE MIR 16 218 -44 223 218 40 109 chr11 119890483 119890584 -28892888 - MIR SINE MIR -36 226 133 27 29 0 0 chr11 119891359 119891393 -28892079 + AT_rich Low_complexity Low_complexity 1 34 0 1026 280 33 70 chr11 119891788 119892299 -28891173 + LTR67 LTR ERVL 1 492 -65 25 75 0 0 chr11 119892361 119892414 -28891058 + AT_rich Low_complexity Low_complexity 1 53 0 2221 123 7 0 chr11 119892803 119893112 -28890360 + AluSx SINE Alu 1 311 -1 941 99 45 29 chr11 119893224 119893413 -28890059 + L1MA8 LINE L1 6095 6298 -2 1873 112 42 28 chr11 119893808 119894095 -28889377 - AluSx SINE Alu -21 291 1 207 342 17 68 chr11 119894122 119894239 -28889233 - MIR SINE MIR -132 130 20 516 273 50 0 chr11 119894778 119894899 -28888573 - MIR SINE MIR -29 233 107 * 542 251 110 21 chr11 119894874 119895065 -28888407 - L2 LINE L2 -695 2619 2412 312 264 0 23 chr11 119895081 119895168 -28888304 + L2 LINE L2 2303 2387 -927 203 340 0 0 chr11 119895335 119895382 -28888090 + L2 LINE L2 3142 3188 -84 211 221 42 63 chr11 119895390 119895485 -28887987 - MIR SINE MIR -8 254 162 366 250 131 0 chr11 119895499 119895583 -28887889 + MIR SINE MIR 38 132 -130 233 356 112 19 chr11 119895591 119895796 -28887676 - L2 LINE L2 -181 3091 2868 441 299 184 69 chr11 119895934 119896326 -28887146 + L2 LINE L2 2867 3303 -10 261 347 124 4 chr11 119896380 119896605 -28886867 - L2 LINE L2 -1059 2255 2004 22 0 0 0 chr11 119896904 119896926 -28886546 + AT_rich Low_complexity Low_complexity 1 22 0 331 330 0 25 chr11 119897061 119897179 -28886293 - L1MC4 LINE L1 -1314 6728 6614 445 299 190 18 chr11 119897263 119897484 -28885988 - L2 LINE L2 -219 3094 2836 235 264 0 0 chr11 119897571 119897624 -28885848 + L2 LINE L2 3220 3272 0 421 258 104 43 chr11 119899575 119899738 -28883734 - L2 LINE L2 -25 3288 3116 637 245 68 15 chr11 119900361 119900603 -28882869 - L1MC4 LINE L1 -345 5819 5680 225 150 50 0 chr11 119901195 119901235 -28882237 + L2 LINE L2 3224 3265 -7 207 69 0 0 chr11 119902138 119902167 -28881305 + (TC)n Simple_repeat Simple_repeat 2 30 0 201 129 0 0 chr11 119902870 119902901 -28880571 + (TC)n Simple_repeat Simple_repeat 2 32 0 759 271 145 5 chr11 119903323 119903544 -28879928 + MIR SINE MIR 10 261 -1 2071 125 3 0 chr11 119903937 119904226 -28879246 + AluSx SINE Alu 1 290 -22 219 303 148 26 chr11 119904731 119904886 -28878586 + MIR SINE MIR 71 244 -18 596 152 9 19 chr11 119905645 119905750 -28877722 - AluSg SINE Alu -206 104 1 7411 117 17 28 chr11 119905763 119907018 -28876454 + Tigger1 DNA MER2_type 1177 2417 -1 464 295 48 6 chr11 119907330 119907496 -28875976 - MIR SINE MIR 0 262 90 2350 60 7 3 chr11 119907504 119907803 -28875669 - AluY SINE Alu -10 301 2 383 61 0 0 chr11 119907918 119907967 -28875505 - Tigger1 DNA MER2_type -637 1781 1733 1420 135 10 111 chr11 119907967 119908264 -28875208 - AluSx SINE Alu -45 267 1 22 0 0 0 chr11 119908412 119908434 -28875038 + AT_rich Low_complexity Low_complexity 1 22 0 478 240 98 54 chr11 119908504 119908708 -28874764 + MIR SINE MIR 17 246 -16 27 0 0 0 chr11 119909033 119909060 -28874412 + AT_rich Low_complexity Low_complexity 1 27 0 250 191 45 135 chr11 119909860 119909887 -28873585 - L1MC4 LINE L1 -542 5579 5551 2570 11 0 0 chr11 119909887 119910204 -28873268 + AluY SINE Alu 1 317 0 250 191 45 135 chr11 119910204 119910264 -28873208 - L1MC4 LINE L1 -570 5551 5499 402 290 9 85 chr11 119910311 119910535 -28872937 + MIR SINE MIR 9 215 -47 237 239 220 9 chr11 119911015 119911124 -28872348 - Tigger8 DNA MER2_type -126 540 409 1307 179 124 18 chr11 119911279 119911417 -28872055 - AluSg SINE Alu -8 302 180 2377 103 0 6 chr11 119911417 119911728 -28871744 - AluSq SINE Alu -4 309 1 1307 179 124 18 chr11 119911728 119911862 -28871610 - AluSg SINE Alu -130 180 1 1597 174 7 28 chr11 119911867 119912155 -28871317 - AluJb SINE Alu -30 282 1 357 273 79 79 chr11 119912251 119912416 -28871056 - Tigger8 DNA MER2_type -429 237 73 701 291 136 3 chr11 119912508 119912817 -28870655 + L2 LINE L2 2158 2507 -807 305 296 103 36 chr11 119912884 119913107 -28870365 - L1 LINE L1 -2335 3811 3574 308 262 139 12 chr11 119913435 119913759 -28869713 - L1 LINE L1 -2941 3205 2841 1643 172 16 40 chr11 119915440 119915743 -28867729 - AluJb SINE Alu -16 296 1 1800 159 29 0 chr11 119916112 119916388 -28867084 - AluJb SINE Alu -25 287 4 1621 205 98 16 chr11 119917083 119917522 -28865950 + Charlie4a DNA MER1_type 18 492 -16 216 335 181 15 chr11 119917616 119917876 -28865596 + L2 LINE L2 2456 2758 -556 21 0 0 0 chr11 119918920 119918941 -28864531 + AT_rich Low_complexity Low_complexity 1 21 0 1658 170 10 29 chr11 119918991 119919173 -28864299 - AluJo SINE Alu -1 311 127 247 44 44 22 chr11 119919173 119919218 -28864254 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 1964 151 0 0 chr11 119919219 119919503 -28863969 - AluSx SINE Alu -28 284 1 1658 170 10 29 chr11 119919503 119919629 -28863843 - AluJo SINE Alu -184 128 7 2264 108 3 13 chr11 119919645 119919960 -28863512 - AluSx SINE Alu 0 312 1 798 216 12 0 chr11 119920594 119920756 -28862716 - MIR SINE MIR -23 239 76 231 278 56 0 chr11 119921087 119921159 -28862313 + L1M4 LINE L1 3688 3763 -2383 504 215 148 0 chr11 119921387 119921522 -28861950 - MIR SINE MIR -4 258 104 728 188 6 17 chr11 119921536 119921717 -28861755 + (TA)n Simple_repeat Simple_repeat 2 180 0 400 165 22 0 chr11 119921732 119921823 -28861649 + (TA)n Simple_repeat Simple_repeat 1 93 0 311 212 10 81 chr11 119921832 119921931 -28861541 - L1MC4 LINE L1 -1339 6703 6612 402 185 9 19 chr11 119921931 119922039 -28861433 + (TA)n Simple_repeat Simple_repeat 1 107 0 21 0 0 0 chr11 119922176 119922197 -28861275 + AT_rich Low_complexity Low_complexity 1 21 0 2029 138 0 0 chr11 119922413 119922723 -28860749 + AluSx SINE Alu 1 310 0 244 293 108 35 chr11 119922859 119923091 -28860381 + L1M4 LINE L1 4588 4836 -1310 332 187 88 22 chr11 119923106 119923197 -28860275 + L2 LINE L2 2704 2800 -514 432 208 10 10 chr11 119923213 119923309 -28860163 + MER5A DNA MER1_type 14 109 -80 327 289 201 5 chr11 119923292 119923499 -28859973 + L2 LINE L2 2726 2997 -316 * 1707 206 19 6 chr11 119923499 119923858 -28859614 - MLT1A1 LTR MaLR 0 365 2 327 289 201 5 chr11 119923858 119923931 -28859541 + L2 LINE L2 2997 3054 -259 2713 179 28 31 chr11 119924094 119924636 -28858836 + MER82 DNA MER2_type 114 653 0 790 211 26 0 chr11 119924901 119925057 -28858415 + MER5B DNA MER1_type 12 171 -7 388 272 35 0 chr11 119925162 119925276 -28858196 - L2 LINE L2 -2 3311 3194 423 151 86 43 chr11 119926353 119926430 -28857042 - Tigger7 DNA MER2_type -2 2585 2502 1853 163 51 9 chr11 119926430 119926780 -28856692 + MER47A DNA MER2_type 1 365 -1 423 151 86 43 chr11 119926780 119926795 -28856677 - Tigger7 DNA MER2_type -85 2502 2489 1132 190 8 79 chr11 119926812 119927065 -28856407 - Tigger7 DNA MER2_type -470 235 1 206 364 25 25 chr11 119928465 119928583 -28854889 - L2 LINE L2 -217 3055 2938 315 0 0 0 chr11 119929167 119929202 -28854270 + (TG)n Simple_repeat Simple_repeat 1 35 0 2065 115 20 7 chr11 119929203 119929498 -28853974 - AluSx SINE Alu -13 299 1 1887 150 29 16 chr11 119930093 119930399 -28853073 - AluJo SINE Alu 0 312 3 23 68 0 0 chr11 119930762 119930806 -28852666 + AT_rich Low_complexity Low_complexity 1 44 0 1983 138 0 3 chr11 119931494 119931791 -28851681 + AluSx SINE Alu 1 296 -16 189 0 0 0 chr11 119932772 119932793 -28850679 + (A)n Simple_repeat Simple_repeat 1 21 0 2271 118 0 3 chr11 119939086 119939391 -28844081 + AluSx SINE Alu 1 304 -8 371 358 40 17 chr11 119940245 119940421 -28843051 + MIR SINE MIR 3 182 -80 670 181 26 0 chr11 119941855 119941971 -28841501 + AluJb SINE Alu 1 119 -193 40 21 0 0 chr11 119941978 119942025 -28841447 + AT_rich Low_complexity Low_complexity 1 47 0 325 262 84 94 chr11 119942171 119942248 -28841224 + MER5A DNA MER1_type 1 77 -112 1450 171 34 31 chr11 119942248 119942439 -28841033 - MER33 DNA MER1_type -2261 324 130 2001 133 3 7 chr11 119942439 119942740 -28840732 - AluSx SINE Alu -12 300 1 1450 171 34 31 chr11 119942740 119942870 -28840602 - MER33 DNA MER1_type -2455 130 2 325 262 84 94 chr11 119942870 119942983 -28840489 + MER5A DNA MER1_type 77 189 0 475 99 0 0 chr11 119943746 119943817 -28839655 - Alu SINE Alu -7 303 233 1651 155 59 0 chr11 119943902 119944173 -28839299 + AluJb SINE Alu 1 287 -25 231 290 48 76 chr11 119944688 119944833 -28838639 - L2 LINE L2 -540 2774 2634 1042 179 75 4 chr11 119945588 119945840 -28837632 + MER33 DNA MER1_type 51 320 -4 273 392 70 12 chr11 119947177 119947348 -28836124 + L3b LINE CR1 1363 1543 -40 38 39 0 0 chr11 119947371 119947423 -28836049 + AT_rich Low_complexity Low_complexity 1 52 0 210 118 0 0 chr11 119947551 119947585 -28835887 + (TATATG)n Simple_repeat Simple_repeat 4 37 0 816 118 17 8 chr11 119947586 119947705 -28835767 - FLAM_C SINE Alu -23 120 1 530 278 151 0 chr11 119948178 119948383 -28835089 - MIR SINE MIR -7 255 20 2407 60 0 7 chr11 119949873 119950171 -28833301 - AluY SINE Alu -15 296 1 1556 92 4 9 chr11 119951272 119951501 -28831971 + L1PA8 LINE L1 5932 6159 -13 186 43 0 0 chr11 119951504 119951527 -28831945 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 201 266 0 51 chr11 119951904 119951983 -28831489 + GA-rich Low_complexity Low_complexity 2 76 0 1017 269 68 14 chr11 119953295 119954207 -28829265 - L1ME LINE L1 -520 5644 4490 21 71 0 0 chr11 119954481 119954523 -28828949 + AT_rich Low_complexity Low_complexity 1 42 0 234 253 95 21 chr11 119954819 119954914 -28828558 - MLT1L LTR MaLR -5 610 509 271 167 0 0 chr11 119955300 119955342 -28828130 - 5S rRNA rRNA -79 42 1 2136 123 0 0 chr11 119957065 119957366 -28826106 - AluSx SINE Alu -8 304 4 355 292 35 9 chr11 119957497 119957610 -28825862 + MIR SINE MIR 21 136 -72 1866 147 10 3 chr11 119957971 119958264 -28825208 + AluJb SINE Alu 1 295 -17 277 268 145 72 chr11 119958690 119958888 -28824584 + L1ME4a LINE L1 5268 5450 -728 2135 107 0 36 chr11 119958888 119959196 -28824276 + AluSx SINE Alu 1 297 -15 277 268 145 72 chr11 119959196 119959485 -28823987 + L1ME4a LINE L1 5450 5802 -376 211 205 0 0 chr11 119959572 119959611 -28823861 + (CATA)n Simple_repeat Simple_repeat 2 40 0 326 281 20 26 chr11 119959632 119959785 -28823687 + L1ME4a LINE L1 5959 6110 -11 223 169 46 0 chr11 119959998 119960063 -28823409 + (TA)n Simple_repeat Simple_repeat 1 68 0 328 301 0 0 chr11 119960222 119960295 -28823177 - L2 LINE L2 -1 3271 3199 233 106 21 21 chr11 119960357 119960404 -28823068 + L1ME LINE L1 5387 5433 -688 313 272 61 26 chr11 119960569 119960683 -28822789 - L2 LINE L2 0 3272 3155 2365 88 0 0 chr11 119960782 119961077 -28822395 + AluSg SINE Alu 1 295 -15 229 252 285 20 chr11 119961126 119961277 -28822195 - MIR SINE MIR -9 253 63 189 0 0 0 chr11 119961314 119961335 -28822137 + (T)n Simple_repeat Simple_repeat 1 21 0 369 242 109 16 chr11 119961689 119961704 -28821768 + L1ME3A LINE L1 5714 5726 -444 2129 135 0 3 chr11 119961704 119962007 -28821465 + AluSx SINE Alu 1 302 -10 369 242 109 16 chr11 119962007 119962119 -28821353 + L1ME3A LINE L1 5726 5853 -317 771 179 20 61 chr11 119962636 119962696 -28820776 + MER5A DNA MER1_type 2 63 -126 201 39 0 0 chr11 119962696 119962722 -28820750 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 1867 138 0 4 chr11 119962730 119963005 -28820467 - AluSx SINE Alu -38 274 1 771 179 20 61 chr11 119963005 119963131 -28820341 + MER5A DNA MER1_type 70 189 0 1328 199 67 7 chr11 119963283 119963580 -28819892 + MER58B DNA MER1_type 19 333 -8 877 98 30 15 chr11 119963719 119963851 -28819621 - FLAM_C SINE Alu -9 134 1 22 23 0 45 chr11 119964388 119964408 -28819064 + AT_rich Low_complexity Low_complexity 1 20 -22 1919 138 11 0 chr11 119964408 119964691 -28818781 + AluSq SINE Alu 1 286 -27 22 23 0 45 chr11 119964691 119964714 -28818758 + AT_rich Low_complexity Low_complexity 20 42 0 42677 31 22 2 chr11 119964718 119970733 -28812739 + L1PA2 LINE L1 13 6152 -3 189 0 0 0 chr11 119970781 119970802 -28812670 + (TA)n Simple_repeat Simple_repeat 1 21 0 2183 87 0 11 chr11 119970810 119971144 -28812328 + AluY SINE Alu 1 331 0 471 311 51 11 chr11 119971846 119972023 -28811449 + L2 LINE L2 2782 2965 -349 1786 143 23 40 chr11 119972109 119972409 -28811063 - AluJb SINE Alu -17 295 1 871 142 0 22 chr11 119972409 119972543 -28810929 - AluJo SINE Alu -175 137 7 308 281 72 30 chr11 119972639 119972806 -28810666 + MER102a DNA MER1_type 127 300 -30 327 254 0 0 chr11 119972969 119973036 -28810436 - MER116 DNA Mariner -12 68 2 250 238 161 35 chr11 119973047 119973190 -28810282 + L2 LINE L2 3152 3312 -1 364 379 16 16 chr11 119974411 119974601 -28808871 + L2 LINE L2 2902 3091 -181 2121 244 124 25 chr11 119974612 119975722 -28807750 - L2 LINE L2 0 3313 2088 346 279 168 20 chr11 119976008 119976205 -28807267 - MIR SINE MIR -13 249 24 2070 102 56 0 chr11 119976246 119976530 -28806942 - AluSq SINE Alu -13 300 1 198 0 0 0 chr11 119976611 119976633 -28806839 + (A)n Simple_repeat Simple_repeat 1 22 0 2014 143 0 0 chr11 119977049 119977335 -28806137 + AluSx SINE Alu 1 286 -26 396 0 0 0 chr11 119977335 119977379 -28806093 + (CA)n Simple_repeat Simple_repeat 2 45 0 21 36 0 0 chr11 119977843 119977871 -28805601 + AT_rich Low_complexity Low_complexity 1 28 0 2140 83 0 14 chr11 119978250 119978528 -28804944 + AluY SINE Alu 3 276 -35 231 36 0 0 chr11 119978535 119978563 -28804909 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 1068 154 5 32 chr11 119978783 119978802 -28804670 + AluSg/x SINE Alu 118 136 -174 2246 93 0 10 chr11 119978802 119979113 -28804359 + AluY SINE Alu 1 308 -3 1068 154 5 32 chr11 119979113 119979281 -28804191 + AluSg/x SINE Alu 136 300 -10 1563 84 183 27 chr11 119979517 119979779 -28803693 + AluSp SINE Alu 1 303 0 29 28 0 0 chr11 119979939 119979975 -28803497 + AT_rich Low_complexity Low_complexity 1 36 0 4359 153 47 75 chr11 119980940 119981498 -28801974 + L1MB3 LINE L1 5101 5595 -588 2134 100 3 62 chr11 119981498 119981819 -28801653 + AluSp SINE Alu 1 302 -11 4359 153 47 75 chr11 119981819 119982392 -28801080 + L1MB3 LINE L1 5595 6182 -1 21 36 0 0 chr11 119983168 119983196 -28800276 + AT_rich Low_complexity Low_complexity 1 28 0 182 287 194 23 chr11 119983843 119983972 -28799500 + L3b LINE CR1 1166 1316 -267 23 54 0 0 chr11 119986112 119986149 -28797323 + AT_rich Low_complexity Low_complexity 1 37 0 299 64 0 21 chr11 119986288 119986297 -28797175 + (CA)n Simple_repeat Simple_repeat 1 54 0 299 64 0 21 chr11 119986297 119986344 -28797128 + (CA)n Simple_repeat Simple_repeat 1 46 0 183 80 0 0 chr11 119987334 119987359 -28796113 + (A)n Simple_repeat Simple_repeat 1 25 0 22 88 0 0 chr11 119987768 119987825 -28795647 + AT_rich Low_complexity Low_complexity 1 57 0 22 56 0 0 chr11 119988145 119988181 -28795291 + AT_rich Low_complexity Low_complexity 1 36 0 1966 136 21 0 chr11 119988349 119988648 -28794824 - AluSx SINE Alu 0 305 1 322 278 110 35 chr11 119989243 119989416 -28794056 + L1MC5 LINE L1 7009 7194 -767 475 302 31 31 chr11 119989477 119989735 -28793737 + L1MC4 LINE L1 7194 7451 -591 591 192 42 8 chr11 119989744 119989864 -28793608 - MER94 DNA DNA -2 132 9 361 302 129 17 chr11 119989891 119990123 -28793349 + L1MC5 LINE L1 7302 7559 -402 1485 187 53 7 chr11 119990804 119991087 -28792385 + AluJo SINE Alu 1 296 -16 244 227 86 159 chr11 119992294 119992360 -28791112 - MIR SINE MIR -65 197 128 2154 106 7 0 chr11 119992360 119992652 -28790820 - AluSx SINE Alu -18 294 1 244 227 86 159 chr11 119992652 119992748 -28790724 - MIR SINE MIR -134 128 47 212 134 12 98 chr11 119992829 119992911 -28790561 + (TTATA)n Simple_repeat Simple_repeat 2 76 0 935 85 85 0 chr11 119993522 119993651 -28789821 - FRAM SINE Alu -19 157 18 22 0 0 0 chr11 119993750 119993772 -28789700 + AT_rich Low_complexity Low_complexity 1 22 0 2255 116 0 3 chr11 119994374 119994684 -28788788 + AluSx SINE Alu 1 309 -3 684 144 0 45 chr11 119994742 119994874 -28788598 + FLAM_C SINE Alu 14 139 -4 607 141 0 23 chr11 119994874 119995002 -28788470 + L1MA4 LINE L1 4321 4445 -1701 1316 164 49 4 chr11 119995004 119995406 -28788066 + L1MA4 LINE L1 5068 5489 -746 286 89 0 22 chr11 119995406 119995451 -28788021 + Alu SINE Alu 1 44 -259 236 144 29 3 chr11 119995453 119995592 -28787880 + AluSg/x SINE Alu 124 307 -1 2478 136 73 85 chr11 119995597 119996194 -28787278 + L1MA4 LINE L1 5490 6129 -42 2695 10 0 7 chr11 119996194 119996494 -28786978 + AluY SINE Alu 1 298 -13 2294 92 0 7 chr11 119996504 119996808 -28786664 + AluSx SINE Alu 1 302 -10 26 0 0 0 chr11 119996863 119996889 -28786583 + AT_rich Low_complexity Low_complexity 1 26 0 2343 112 0 0 chr11 119997017 119997329 -28786143 - AluSx SINE Alu 0 312 1 2473 160 52 7 chr11 119997434 119997891 -28785581 + L1MB3 LINE L1 5653 6130 -53 1944 110 63 17 chr11 119997903 119998202 -28785270 + AluSq SINE Alu 1 313 0 914 234 0 50 chr11 119998553 119998754 -28784718 + MER58A DNA MER1_type 1 191 -33 1179 143 8 97 chr11 119998778 119999037 -28784435 + MER46A DNA MER2_type 1 236 0 1874 157 3 3 chr11 119999171 119999465 -28784007 + AluSx SINE Alu 3 296 -16 3409 184 68 24 chr11 119999473 119999887 -28783585 + L1MB8 LINE L1 5362 5757 -421 1702 111 0 8 chr11 119999887 120000122 -28783350 + AluSg/x SINE Alu 75 307 -5 3409 184 68 24 chr11 120000122 120000490 -28782982 + L1MB8 LINE L1 5757 6178 0 333 314 108 34 chr11 120000492 120000696 -28782776 + L1ME3A LINE L1 5938 6156 -14 1794 122 66 21 chr11 120000698 120000985 -28782487 - AluSx SINE Alu -12 300 1 812 199 17 34 chr11 120001001 120001177 -28782295 + AluJo SINE Alu 120 292 -20 195 299 11 35 chr11 120001222 120001309 -28782163 - MIR SINE MIR -112 150 66 453 301 68 46 chr11 120001340 120001559 -28781913 + L2 LINE L2 3061 3284 -29 257 88 0 0 chr11 120001689 120001723 -28781749 - AluJo SINE Alu -12 290 257 1106 209 10 10 chr11 120001723 120001929 -28781543 - AluJo SINE Alu -106 206 1 892 183 139 10 chr11 120002129 120002227 -28781245 + MER46A DNA MER2_type 2 86 -2645 1788 132 92 0 chr11 120002227 120002500 -28780972 + AluSx SINE Alu 1 298 -14 892 183 139 10 chr11 120002500 120002609 -28780863 + MER46A DNA MER2_type 86 236 0 229 239 0 30 chr11 120003493 120003560 -28779912 + T-rich Low_complexity Low_complexity 5 69 0 2058 132 29 9 chr11 120003626 120003974 -28779498 + L1PB2 LINE L1 5794 6148 -3 22 0 0 0 chr11 120004204 120004226 -28779246 + AT_rich Low_complexity Low_complexity 1 22 0 243 268 0 0 chr11 120004689 120004745 -28778727 + MER117 DNA MER1_type 94 149 -48 272 325 12 0 chr11 120004777 120004857 -28778615 - L2 LINE L2 -4 3268 3188 1272 192 73 28 chr11 120005341 120005628 -28777844 + AluJo SINE Alu 1 300 -12 620 197 0 95 chr11 120008519 120008666 -28774806 - FLAM_A SINE Alu 0 133 1 25 31 0 0 chr11 120009171 120009203 -28774269 + AT_rich Low_complexity Low_complexity 1 32 0 26 50 0 0 chr11 120009558 120009598 -28773874 + AT_rich Low_complexity Low_complexity 1 40 0 1915 152 7 3 chr11 120010216 120010512 -28772960 - AluSx SINE Alu -15 297 1 288 100 71 57 chr11 120011603 120011673 -28771799 + L1MB7 LINE L1 6094 6164 -20 195 250 0 0 chr11 120012202 120012242 -28771230 - MIR SINE MIR -65 197 158 805 167 0 8 chr11 120012329 120012461 -28771011 + FLAM_C SINE Alu 2 132 -1 230 116 23 0 chr11 120012875 120012918 -28770554 + (CATATA)n Simple_repeat Simple_repeat 5 48 0 22 0 0 0 chr11 120013936 120013958 -28769514 + AT_rich Low_complexity Low_complexity 1 22 0 1349 205 29 4 chr11 120014002 120014275 -28769197 + L1MD2 LINE L1 6069 6348 -11 1745 90 19 182 chr11 120014605 120014973 -28768499 - AluYb8 SINE Alu 0 308 1 376 353 39 42 chr11 120015571 120015715 -28767757 + L2 LINE L2 1742 1885 -1429 2405 86 3 0 chr11 120015715 120016019 -28767453 - AluSp SINE Alu -8 305 1 376 353 39 42 chr11 120016019 120016180 -28767292 + L2 LINE L2 1885 2046 -1268 1126 120 0 0 chr11 120016181 120016339 -28767133 - AluSg/x SINE Alu -18 294 137 743 309 56 25 chr11 120016376 120016388 -28767084 + L2 LINE L2 2123 2133 -1181 1252 155 103 123 chr11 120016388 120016737 -28766735 + MER2 DNA MER2_type 1 342 -2 743 309 56 25 chr11 120016737 120017044 -28766428 + L2 LINE L2 2133 2452 -862 2337 100 0 16 chr11 120018036 120018346 -28765126 + AluSx SINE Alu 1 305 -7 375 307 9 9 chr11 120018477 120018591 -28764881 - MIR SINE MIR -109 153 40 2038 122 0 14 chr11 120018726 120019012 -28764460 + AluSx SINE Alu 1 282 -30 1941 138 3 26 chr11 120019312 120019617 -28763855 + AluJb SINE Alu 1 298 -14 1983 122 51 3 chr11 120020831 120021125 -28762347 - AluSx SINE Alu -4 308 1 22 0 0 0 chr11 120021230 120021252 -28762220 + AT_rich Low_complexity Low_complexity 1 22 0 2326 80 0 29 chr11 120021774 120022085 -28761387 + AluY SINE Alu 1 302 -9 1567 193 41 7 chr11 120022295 120022467 -28761005 - AluJb SINE Alu -7 305 117 246 32 0 0 chr11 120022467 120022498 -28760974 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1567 193 41 7 chr11 120022498 120022620 -28760852 - AluJb SINE Alu -195 117 1 1826 153 0 17 chr11 120022624 120022936 -28760536 - AluJb SINE Alu 0 307 1 2014 128 11 0 chr11 120022966 120023248 -28760224 + AluSx SINE Alu 1 285 -27 477 0 0 0 chr11 120023248 120023301 -28760171 + (CA)n Simple_repeat Simple_repeat 2 54 0 1588 191 36 7 chr11 120023416 120023719 -28759753 + AluJo SINE Alu 1 312 0 2142 134 0 7 chr11 120023761 120024068 -28759404 + AluSg1 SINE Alu 1 305 -4 25 0 0 0 chr11 120024504 120024529 -28758943 + AT_rich Low_complexity Low_complexity 1 25 0 201 196 20 0 chr11 120024662 120024713 -28758759 + (TA)n Simple_repeat Simple_repeat 2 53 0 27 0 0 0 chr11 120024713 120024740 -28758732 + AT_rich Low_complexity Low_complexity 1 27 0 1215 156 70 96 chr11 120024740 120025010 -28758462 - AluSx SINE Alu -49 263 1 1856 129 7 20 chr11 120025490 120025784 -28757688 + AluJb SINE Alu 1 290 -22 216 97 0 0 chr11 120025839 120025870 -28757602 + (TG)n Simple_repeat Simple_repeat 2 32 0 2454 131 9 3 chr11 120025870 120026213 -28757259 - MER7A DNA MER2_type -1 345 3 609 260 100 15 chr11 120026258 120026458 -28757014 - MIR SINE MIR -37 225 9 419 225 33 99 chr11 120027287 120027438 -28756034 + MER5B DNA MER1_type 32 172 -6 2272 120 65 6 chr11 120027566 120027907 -28755565 + MER46B DNA MER2_type 1 236 0 365 302 119 55 chr11 120028510 120028677 -28754795 - MIR SINE MIR -10 252 64 1527 189 55 7 chr11 120028677 120028968 -28754504 + AluJo SINE Alu 1 305 -7 365 302 119 55 chr11 120028968 120029035 -28754437 - MIR SINE MIR -198 64 3 885 222 0 17 chr11 120029135 120029311 -28754161 - FAM SINE Alu -2 173 1 22 0 0 0 chr11 120029320 120029342 -28754130 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr11 120029609 120029631 -28753841 + AT_rich Low_complexity Low_complexity 1 22 0 379 244 12 0 chr11 120030168 120030250 -28753222 + L1ME3A LINE L1 6035 6117 -53 707 165 0 0 chr11 120030256 120030365 -28753107 - AluJb SINE Alu -44 268 160 816 303 107 15 chr11 120030454 120030866 -28752606 - L1ME3A LINE L1 -295 5875 5426 495 198 112 0 chr11 120030946 120031062 -28752410 + MLT1E1 LTR MaLR 113 241 -413 855 194 13 7 chr11 120031090 120031245 -28752227 + MLT1E3 LTR MaLR 469 624 0 812 240 142 74 chr11 120031294 120031515 -28751957 - L1ME3A LINE L1 -819 5327 5122 2006 145 7 10 chr11 120031515 120031818 -28751654 - AluSx SINE Alu -10 302 1 812 240 142 74 chr11 120031818 120032405 -28751067 - L1ME3A LINE L1 -1024 5122 4464 832 238 86 56 chr11 120032502 120032805 -28750667 + MER46C DNA MER2_type 3 314 -24 341 296 0 9 chr11 120032929 120033037 -28750435 - L1ME LINE L1 -582 5584 5478 2214 121 3 13 chr11 120033037 120033352 -28750120 - AluSx SINE Alu 0 312 1 2305 246 132 25 chr11 120033365 120034460 -28749012 - L1ME LINE L1 -782 5364 4152 405 337 49 16 chr11 120034855 120035039 -28748433 - MIR SINE MIR -48 214 25 1343 133 5 0 chr11 120035063 120035258 -28748214 + AluSq SINE Alu 88 283 -30 1624 192 7 19 chr11 120035974 120036281 -28747191 - AluJb SINE Alu -9 303 1 253 184 0 0 chr11 120036396 120036434 -28747038 + Alu SINE Alu 7 44 -258 911 170 0 0 chr11 120036434 120036581 -28746891 + AluJb SINE Alu 157 303 -9 2151 126 3 0 chr11 120036615 120036917 -28746555 + AluSq SINE Alu 1 303 -10 2112 99 10 31 chr11 120037055 120037347 -28746125 - AluSx SINE Alu -14 298 13 192 333 53 0 chr11 120037481 120037556 -28745916 + L2 LINE L2 2550 2628 -686 1167 218 74 11 chr11 120037557 120037841 -28745631 + AluJb SINE Alu 1 302 0 314 309 122 20 chr11 120038172 120038418 -28745054 + L1ME4a LINE L1 5628 5898 -223 1775 171 7 16 chr11 120038429 120038739 -28744733 + AluJo SINE Alu 1 307 -5 2194 98 17 14 chr11 120038890 120039185 -28744287 - AluSx SINE Alu -16 296 1 718 182 0 0 chr11 120039318 120039428 -28744044 + FLAM_C SINE Alu 9 118 -25 23 54 0 0 chr11 120039531 120039568 -28743904 + AT_rich Low_complexity Low_complexity 1 37 0 2471 44 7 10 chr11 120040257 120040552 -28742920 - AluY SINE Alu -17 294 1 2037 128 10 3 chr11 120040837 120041133 -28742339 + AluSg SINE Alu 2 299 -11 2153 135 3 0 chr11 120041161 120041464 -28742008 + AluSx SINE Alu 1 304 -8 32 26 0 0 chr11 120041643 120041682 -28741790 + AT_rich Low_complexity Low_complexity 1 39 0 26 0 0 0 chr11 120042355 120042381 -28741091 + AT_rich Low_complexity Low_complexity 1 26 0 890 183 208 59 chr11 120042558 120042839 -28740633 - Charlie4a DNA MER1_type -1454 507 145 1232 174 202 0 chr11 120042839 120043086 -28740386 + AluJo SINE Alu 1 297 -15 890 183 208 59 chr11 120043086 120043213 -28740259 - Charlie4a DNA MER1_type -1816 145 38 185 261 43 0 chr11 120044469 120044515 -28738957 + L2 LINE L2 3215 3262 -10 2388 85 3 3 chr11 120044685 120044991 -28738481 + AluSp SINE Alu 1 306 -7 1871 123 6 123 chr11 120045364 120045706 -28737766 + AluSx SINE Alu 1 302 0 1759 139 68 0 chr11 120045972 120046253 -28737219 + AluJb SINE Alu 1 300 -12 1120 205 43 5 chr11 120046403 120046613 -28736859 - MER58A DNA MER1_type 0 224 7 1224 174 8 51 chr11 120046804 120047039 -28736433 + AluJo SINE Alu 31 255 -57 219 188 0 0 chr11 120047060 120047108 -28736364 + GA-rich Low_complexity Low_complexity 3 50 0 438 209 70 9 chr11 120047153 120047268 -28736204 + MLT1L LTR MaLR 163 284 -331 561 198 0 0 chr11 120047321 120047417 -28736055 - AluJb SINE Alu -81 231 136 312 228 169 92 chr11 120047463 120047576 -28735896 + MLT1L LTR MaLR 410 544 -71 1366 144 3 127 chr11 120047576 120047740 -28735732 + AluJo SINE Alu 1 101 -211 2219 120 0 0 chr11 120047740 120048040 -28735432 + AluSx SINE Alu 1 300 -12 1366 144 3 127 chr11 120048040 120048221 -28735251 + AluJo SINE Alu 101 303 -9 312 228 169 92 chr11 120048221 120048291 -28735181 + MLT1L LTR MaLR 544 607 -8 21 0 0 0 chr11 120048372 120048393 -28735079 + AT_rich Low_complexity Low_complexity 1 21 0 234 178 22 0 chr11 120048565 120048610 -28734862 - MER58 DNA MER1_type -1 2419 2374 1940 103 4 4 chr11 120049841 120050114 -28733358 + AluSx SINE Alu 1 273 -39 222 253 120 0 chr11 120050506 120050581 -28732891 - L2 LINE L2 -3 3310 3227 21 0 0 0 chr11 120051223 120051244 -28732228 + AT_rich Low_complexity Low_complexity 1 21 0 349 274 178 79 chr11 120051785 120052381 -28731091 - L1M2 LINE L1 -5443 1406 752 21 57 0 0 chr11 120052381 120052416 -28731056 + GC_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr11 120052442 120052475 -28730997 + GC_rich Low_complexity Low_complexity 1 33 0 600 232 36 64 chr11 120053941 120054161 -28729311 - MIR SINE MIR -33 229 16 370 297 55 21 chr11 120054216 120054361 -28729111 + L1ME LINE L1 5463 5612 -509 2203 113 0 7 chr11 120054361 120054670 -28728802 + AluSc SINE Alu 1 307 -2 1385 141 9 31 chr11 120054697 120054924 -28728548 + AluJo SINE Alu 15 236 -76 4425 108 20 31 chr11 120054924 120055446 -28728026 + MER41B LTR ERV1 1 516 -119 1789 157 7 13 chr11 120055446 120055752 -28727720 - AluSx SINE Alu -8 304 1 4425 108 20 31 chr11 120055752 120055871 -28727601 + MER41B LTR ERV1 516 635 0 2393 98 3 3 chr11 120055872 120056199 -28727273 - pTR5 LTR ERV1 -2046 392 66 287 276 10 0 chr11 120056199 120056297 -28727175 - LTR30 LTR ERV1 -80 642 544 2976 148 134 43 chr11 120056297 120057200 -28726272 - pTR5 LTR ERV1 -413 2025 742 473 97 0 0 chr11 120057201 120057263 -28726209 + AluJo SINE Alu 232 293 -19 399 221 63 16 chr11 120057263 120057390 -28726082 + L1ME LINE L1 5606 5738 -383 1672 170 33 7 chr11 120057402 120057702 -28725770 + AluJo SINE Alu 5 312 0 2271 81 7 10 chr11 120057704 120058001 -28725471 - AluSg SINE Alu -14 296 1 1673 170 7 26 chr11 120058378 120058684 -28724788 + AluJb SINE Alu 1 300 -12 2198 108 3 0 chr11 120058684 120058979 -28724493 + AluSq SINE Alu 1 296 -17 181 353 77 39 chr11 120059243 120059399 -28724073 - L2 LINE L2 -86 3186 3025 3344 112 39 52 chr11 120059416 120059950 -28723522 + MER1A DNA MER1_type 1 527 0 361 312 162 66 chr11 120060042 120060555 -28722917 - L2 LINE L2 -474 2840 2279 942 174 6 12 chr11 120060765 120060937 -28722535 - FRAM SINE Alu -5 171 1 786 213 60 13 chr11 120061000 120061150 -28722322 + FRAM SINE Alu 1 157 -19 2370 99 0 6 chr11 120061969 120062283 -28721189 - AluSq SINE Alu -1 312 1 302 257 0 0 chr11 120062283 120062353 -28721119 + MIR3 SINE MIR 124 193 -15 2313 114 0 0 chr11 120062515 120062814 -28720658 + AluSx SINE Alu 1 299 -13 2326 100 0 3 chr11 120063054 120063353 -28720119 - AluSq SINE Alu -15 298 1 860 183 7 0 chr11 120063355 120063495 -28719977 + MLT1F1 LTR MaLR 1 141 -426 1452 182 54 57 chr11 120063495 120063830 -28719642 + MLT1A1 LTR MaLR 1 334 -31 1930 191 77 15 chr11 120063836 120064239 -28719233 + MLT1F1 LTR MaLR 140 567 0 304 284 52 19 chr11 120064581 120064736 -28718736 + L2 LINE L2 2585 2744 -570 290 341 54 16 chr11 120065040 120065169 -28718303 + L2 LINE L2 3180 3313 0 192 304 125 0 chr11 120065180 120065236 -28718236 - MIR SINE MIR -110 98 36 614 200 30 44 chr11 120065559 120065720 -28717752 + FLAM_A SINE Alu 1 133 0 21 36 0 0 chr11 120065750 120065778 -28717694 + AT_rich Low_complexity Low_complexity 1 28 0 2194 115 10 0 chr11 120066215 120066520 -28716952 + AluSq SINE Alu 1 308 -5 2022 179 118 5 chr11 120066641 120067031 -28716441 - MER39 LTR ERV1 -273 434 1 2417 118 6 11 chr11 120067949 120068298 -28715174 - THE1C LTR MaLR 0 375 29 485 219 65 126 chr11 120068780 120069169 -28714303 + L1ME4a LINE L1 5521 5883 -238 2011 127 3 58 chr11 120069169 120069357 -28714115 + AluSx SINE Alu 1 165 -147 2056 104 21 17 chr11 120069357 120069646 -28713826 + AluSp SINE Alu 1 290 -23 2011 127 3 58 chr11 120069646 120069787 -28713685 + AluSx SINE Alu 165 312 0 485 219 65 126 chr11 120069787 120069826 -28713646 + L1ME4a LINE L1 5883 5923 -198 3699 232 74 43 chr11 120069865 120070096 -28713376 - L1M4 LINE L1 -848 5298 5076 1734 191 0 3 chr11 120070096 120070395 -28713077 + AluJb SINE Alu 1 298 -14 3699 232 74 43 chr11 120070395 120070463 -28713009 - L1M4 LINE L1 -1070 5076 5012 2196 116 10 0 chr11 120070463 120070765 -28712707 - AluSg SINE Alu -5 305 1 3699 232 74 43 chr11 120070765 120071716 -28711756 - L1M4 LINE L1 -1134 5012 4001 1076 178 50 135 chr11 120071716 120071787 -28711685 - MLT1A1 LTR MaLR 0 365 290 2141 134 3 0 chr11 120071787 120072085 -28711387 - AluSx SINE Alu -13 299 1 1076 178 50 135 chr11 120072085 120072412 -28711060 - MLT1A1 LTR MaLR -75 290 1 3699 232 74 43 chr11 120072412 120072489 -28710983 - L1M4 LINE L1 -2145 4001 3928 21 0 0 0 chr11 120072527 120072548 -28710924 + AT_rich Low_complexity Low_complexity 1 21 0 2215 135 3 0 chr11 120073905 120074216 -28709256 - AluSx SINE Alu 0 312 1 1678 167 16 50 chr11 120076272 120076459 -28707013 - AluJo SINE Alu 0 312 139 2284 76 0 64 chr11 120076459 120076788 -28706684 - AluSx SINE Alu -4 308 1 1678 167 16 50 chr11 120076788 120076923 -28706549 - AluJo SINE Alu -173 139 1 803 294 24 4 chr11 120077221 120077469 -28706003 + MIR SINE MIR 2 254 -8 678 224 55 11 chr11 120077855 120078038 -28705434 - L1M4 LINE L1 -2073 4073 3883 851 153 0 0 chr11 120078047 120078171 -28705301 - FLAM_C SINE Alu -19 124 1 2351 210 56 5 chr11 120078175 120078785 -28704687 - L1M4 LINE L1 -2812 3334 2694 733 292 114 59 chr11 120079031 120079305 -28704167 + HAL1 LINE L1 263 520 -1987 2297 104 0 3 chr11 120079305 120079602 -28703870 - AluSp SINE Alu -17 296 1 733 292 114 59 chr11 120079602 120079854 -28703618 + HAL1 LINE L1 520 818 -1689 3998 150 47 30 chr11 120080574 120081346 -28702126 - LTR1 LTR ERV1 0 785 1 2274 104 0 28 chr11 120082230 120082548 -28700924 + AluSx SINE Alu 1 309 -3 3815 153 30 37 chr11 120082587 120082665 -28700807 + L1MB2 LINE L1 5441 5518 -673 1920 117 78 4 chr11 120082665 120082946 -28700526 - AluSg SINE Alu -8 302 1 3815 153 30 37 chr11 120082946 120083623 -28699849 + L1MB2 LINE L1 5518 6191 0 2570 59 0 0 chr11 120083630 120083936 -28699536 + AluY SINE Alu 1 306 -5 1833 148 0 4 chr11 120084112 120084382 -28699090 - AluSx SINE Alu -6 306 38 2350 88 0 0 chr11 120084911 120085207 -28698265 + AluSx SINE Alu 1 296 -16 6495 136 67 32 chr11 120086538 120087508 -28695964 - Tigger3b DNA MER2_type -1798 1230 209 2250 116 0 22 chr11 120087508 120087826 -28695646 - AluSx SINE Alu -1 311 1 6495 136 67 32 chr11 120087826 120088043 -28695429 - Tigger3b DNA MER2_type -2819 209 1 436 254 130 81 chr11 120088283 120088532 -28694940 + L1ME4a LINE L1 5565 5835 -286 2116 114 3 17 chr11 120088532 120088831 -28694641 + AluSq SINE Alu 2 296 -17 436 254 130 81 chr11 120088831 120088904 -28694568 + L1ME4a LINE L1 5835 5903 -218 207 272 158 79 chr11 120089323 120089525 -28693947 + MIR SINE MIR 11 228 -34 1959 139 7 7 chr11 120090499 120090794 -28692678 + AluSx SINE Alu 1 295 -17 396 0 0 0 chr11 120096020 120096064 -28687408 + (TG)n Simple_repeat Simple_repeat 2 45 0 903 230 42 18 chr11 120096469 120096686 -28686786 - MER58A DNA MER1_type 0 224 3 2059 67 78 46 chr11 120098730 120099013 -28684459 + AluSx SINE Alu 1 292 -20 344 277 50 0 chr11 120100519 120100638 -28682834 + MIR SINE MIR 138 262 0 270 268 73 0 chr11 120101308 120101390 -28682082 - MIR SINE MIR -89 173 86 2053 118 76 0 chr11 120102757 120103046 -28680426 - AluSx SINE Alu -1 311 1 986 86 8 0 chr11 120104338 120104466 -28679006 - AluSq/x SINE Alu -184 129 1 2081 140 3 0 chr11 120106173 120106459 -28677013 + AluSx SINE Alu 1 287 -25 2406 106 0 0 chr11 120106573 120106884 -28676588 - AluSx SINE Alu -1 311 1 617 60 24 0 chr11 120107337 120107421 -28676051 - AluSg/x SINE Alu -14 298 213 318 317 128 8 chr11 120107425 120107690 -28675782 + L2 LINE L2 2943 3239 -74 2260 94 0 7 chr11 120107847 120108144 -28675328 - AluSg SINE Alu -15 295 1 223 232 131 10 chr11 120108902 120109001 -28674471 + L2 LINE L2 3159 3269 -3 1773 166 3 0 chr11 120109002 120109286 -28674186 + AluJb SINE Alu 1 285 -27 309 299 11 0 chr11 120109602 120109689 -28673783 - MIR SINE MIR -67 141 54 1595 172 19 4 chr11 120110037 120110304 -28673168 - AluJo SINE Alu -39 273 3 548 265 62 6 chr11 120110583 120110745 -28672727 - MER20 DNA MER1_type -21 198 28 375 273 142 16 chr11 120110865 120111048 -28672424 + MLT1J2 LTR MaLR 1 206 -244 305 299 20 20 chr11 120111474 120111621 -28671851 + L1ME3A LINE L1 5870 6016 -154 858 197 28 0 chr11 120112121 120112299 -28671173 + MER5A DNA MER1_type 5 187 -2 8669 172 36 28 chr11 120113114 120114667 -28668805 + L1PA16 LINE L1 1 1565 -5284 2284 73 3 28 chr11 120114668 120114694 -28668778 + L1PB1 LINE L1 5811 5836 -315 2181 110 0 0 chr11 120114694 120115030 -28668442 + AluSq SINE Alu 1 285 -28 2284 73 3 28 chr11 120115030 120115319 -28668153 + L1PB1 LINE L1 5836 6119 -32 8060 237 34 28 chr11 120115322 120116484 -28666988 + L1PA16 LINE L1 2473 3627 -3222 2307 96 3 0 chr11 120116484 120116776 -28666696 + AluSp SINE Alu 1 293 -20 8060 237 34 28 chr11 120116776 120116876 -28666596 + L1PA16 LINE L1 3627 3725 -3124 1704 116 11 69 chr11 120116876 120117153 -28666319 + AluSx SINE Alu 37 297 -15 8060 237 34 28 chr11 120117153 120118256 -28665216 + L1PA16 LINE L1 3725 4852 -1997 2163 121 3 7 chr11 120118257 120118562 -28664910 + AluSx SINE Alu 2 305 -7 6476 112 6 10 chr11 120118566 120120227 -28663245 + L1PA16 LINE L1 5191 6869 0 627 255 20 0 chr11 120120337 120120486 -28662986 - MIR3 SINE MIR -23 185 34 1916 113 0 0 chr11 120120945 120121202 -28662270 - AluSq SINE Alu -56 257 1 1798 108 93 4 chr11 120121645 120121946 -28661526 - AluSc SINE Alu 0 309 1 1817 167 0 3 chr11 120123590 120123883 -28659589 - AluJb SINE Alu -20 292 1 2102 139 20 46 chr11 120125104 120125450 -28658022 + MER1B DNA MER1_type 1 337 0 2111 105 20 10 chr11 120125504 120125798 -28657674 - AluSx SINE Alu -15 297 1 357 331 0 15 chr11 120126303 120126433 -28657039 + L3 LINE CR1 1037 1164 -413 2126 95 7 3 chr11 120127603 120127886 -28655586 + AluSp SINE Alu 25 308 -5 1765 146 29 0 chr11 120128431 120128587 -28654885 - AluSx SINE Alu -24 288 119 477 0 0 0 chr11 120128587 120128640 -28654832 + (TG)n Simple_repeat Simple_repeat 2 54 0 1765 146 29 0 chr11 120128640 120128763 -28654709 - AluSx SINE Alu -193 119 1 1964 110 7 14 chr11 120128805 120129087 -28654385 + AluSx SINE Alu 13 292 -20 1208 179 71 88 chr11 120129111 120129407 -28654065 - AluJb SINE Alu -21 291 1 6294 96 37 18 chr11 120129416 120130357 -28653115 + L1MA2 LINE L1 5346 6304 0 25 0 0 0 chr11 120130357 120130382 -28653090 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr11 120130403 120130425 -28653047 + AT_rich Low_complexity Low_complexity 1 22 0 956 172 30 6 chr11 120130571 120130740 -28652732 + AluJb SINE Alu 125 297 -15 1112 273 104 77 chr11 120130745 120131187 -28652285 + L1ME3A LINE L1 4100 4528 -1642 2468 77 6 0 chr11 120131187 120131498 -28651974 - AluSq SINE Alu 0 313 1 1112 273 104 77 chr11 120131498 120132657 -28650815 + L1ME3A LINE L1 4528 5746 -424 2149 132 0 3 chr11 120132657 120132960 -28650512 + AluSx SINE Alu 1 302 -10 1112 273 104 77 chr11 120132960 120133072 -28650400 + L1ME3A LINE L1 5746 5853 -317 854 179 20 61 chr11 120133589 120133649 -28649823 + MER5A DNA MER1_type 2 63 -126 201 39 0 0 chr11 120133649 120133675 -28649797 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 1872 138 0 4 chr11 120133683 120133958 -28649514 - AluSx SINE Alu -38 274 1 854 179 20 61 chr11 120133958 120134084 -28649388 + MER5A DNA MER1_type 70 189 0 1362 199 67 7 chr11 120134236 120134533 -28648939 + MER58B DNA MER1_type 19 333 -8 670 133 30 44 chr11 120134672 120134807 -28648665 - FLAM_C SINE Alu 0 133 1 22 23 0 45 chr11 120135344 120135364 -28648108 + AT_rich Low_complexity Low_complexity 1 20 -22 1918 138 11 0 chr11 120135364 120135647 -28647825 + AluSq SINE Alu 1 286 -27 22 23 0 45 chr11 120135647 120135670 -28647802 + AT_rich Low_complexity Low_complexity 20 42 0 43614 31 22 2 chr11 120135674 120141689 -28641783 + L1PA2 LINE L1 13 6152 -3 34 0 0 0 chr11 120141724 120141758 -28641714 + AT_rich Low_complexity Low_complexity 1 34 0 2077 92 0 11 chr11 120141770 120142100 -28641372 + AluY SINE Alu 5 331 0 482 311 51 11 chr11 120142802 120142979 -28640493 + L2 LINE L2 2782 2965 -349 1760 143 26 42 chr11 120143056 120143363 -28640109 - AluJb SINE Alu -10 302 1 874 142 0 22 chr11 120143363 120143497 -28639975 - AluJo SINE Alu -175 137 7 310 275 72 30 chr11 120143593 120143760 -28639712 + MER102b DNA MER1_type 138 311 -30 211 261 46 0 chr11 120143807 120143872 -28639600 + L2 LINE L2 2997 3064 -249 342 254 0 0 chr11 120143923 120143990 -28639482 - MER116 DNA Mariner -12 68 2 245 238 161 35 chr11 120144001 120144144 -28639328 + L2 LINE L2 3152 3312 -1 365 374 21 21 chr11 120145364 120145554 -28637918 + L2 LINE L2 2902 3091 -181 2110 244 124 25 chr11 120145565 120146675 -28636797 - L2 LINE L2 0 3313 2088 337 274 168 20 chr11 120146961 120147158 -28636314 - MIR SINE MIR -13 249 24 2091 102 56 0 chr11 120147199 120147483 -28635989 - AluSq SINE Alu -13 300 1 189 0 0 0 chr11 120147564 120147585 -28635887 + (A)n Simple_repeat Simple_repeat 1 21 0 2024 143 0 0 chr11 120148001 120148287 -28635185 + AluSx SINE Alu 1 286 -26 396 0 0 0 chr11 120148287 120148331 -28635141 + (CA)n Simple_repeat Simple_repeat 2 45 0 21 36 0 0 chr11 120148795 120148823 -28634649 + AT_rich Low_complexity Low_complexity 1 28 0 2146 86 0 14 chr11 120149200 120149480 -28633992 + AluY SINE Alu 1 276 -35 231 36 0 0 chr11 120149487 120149515 -28633957 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 1075 154 5 32 chr11 120149735 120149754 -28633718 + AluSg/x SINE Alu 118 136 -174 2267 93 0 10 chr11 120149754 120150065 -28633407 + AluY SINE Alu 1 308 -3 1075 154 5 32 chr11 120150065 120150233 -28633239 + AluSg/x SINE Alu 136 300 -10 1700 84 183 27 chr11 120150469 120150731 -28632741 + AluSp SINE Alu 1 303 0 28 0 0 0 chr11 120150891 120150919 -28632553 + AT_rich Low_complexity Low_complexity 1 28 0 1736 142 68 0 chr11 120151385 120151666 -28631806 + AluJb SINE Alu 1 300 -12 1120 205 43 5 chr11 120151816 120152026 -28631446 - MER58A DNA MER1_type 0 224 7 1224 174 8 51 chr11 120152217 120152452 -28631020 + AluJo SINE Alu 31 255 -57 219 188 0 0 chr11 120152473 120152521 -28630951 + GA-rich Low_complexity Low_complexity 3 50 0 438 209 70 9 chr11 120152566 120152681 -28630791 + MLT1L LTR MaLR 163 284 -331 561 198 0 0 chr11 120152734 120152830 -28630642 - AluJb SINE Alu -81 231 136 312 228 169 92 chr11 120152876 120152989 -28630483 + MLT1L LTR MaLR 410 544 -71 1366 147 3 127 chr11 120152989 120153153 -28630319 + AluJb SINE Alu 1 101 -211 2219 120 0 0 chr11 120153153 120153453 -28630019 + AluSx SINE Alu 1 300 -12 1366 147 3 127 chr11 120153453 120153634 -28629838 + AluJb SINE Alu 101 303 -9 312 228 169 92 chr11 120153634 120153704 -28629768 + MLT1L LTR MaLR 544 607 -8 21 0 0 0 chr11 120153785 120153806 -28629666 + AT_rich Low_complexity Low_complexity 1 21 0 234 178 22 0 chr11 120153978 120154023 -28629449 - MER58 DNA MER1_type -1 2419 2374 1940 103 4 4 chr11 120155254 120155527 -28627945 + AluSx SINE Alu 1 273 -39 222 253 120 0 chr11 120155919 120155994 -28627478 - L2 LINE L2 -3 3310 3227 21 0 0 0 chr11 120156637 120156658 -28626814 + AT_rich Low_complexity Low_complexity 1 21 0 2271 125 3 0 chr11 120156865 120157176 -28626296 - AluSx SINE Alu 0 312 1 1666 167 16 50 chr11 120159232 120159419 -28624053 - AluJo SINE Alu 0 312 139 2244 77 0 64 chr11 120159419 120159746 -28623726 - AluSx SINE Alu -6 306 1 1666 167 16 50 chr11 120159746 120159881 -28623591 - AluJo SINE Alu -173 139 1 890 290 24 4 chr11 120160179 120160427 -28623045 + MIR SINE MIR 2 254 -8 690 224 55 11 chr11 120160813 120160996 -28622476 - L1M4 LINE L1 -2073 4073 3883 844 153 0 0 chr11 120161005 120161129 -28622343 - FLAM_C SINE Alu -19 124 1 2398 210 56 5 chr11 120161133 120161743 -28621729 - L1M4 LINE L1 -2812 3334 2694 738 294 114 59 chr11 120161989 120162263 -28621209 + HAL1 LINE L1 263 520 -1987 2242 111 0 3 chr11 120162263 120162560 -28620912 - AluSp SINE Alu -17 296 1 738 294 114 59 chr11 120162560 120162812 -28620660 + HAL1 LINE L1 520 818 -1689 4214 150 48 31 chr11 120163534 120164306 -28619166 - LTR1 LTR ERV1 0 785 1 2274 104 0 28 chr11 120165190 120165508 -28617964 + AluSx SINE Alu 1 309 -3 3796 158 34 34 chr11 120165534 120166560 -28616912 + L1MB2 LINE L1 5424 6169 -2 1948 114 78 4 chr11 120165624 120166582 -28616890 - AluSg SINE Alu 0 979 1 2549 57 0 0 chr11 120166589 120166890 -28616582 + AluY SINE Alu 1 301 -10 249 139 0 0 chr11 120167025 120167068 -28616404 + (TCCCC)n Simple_repeat Simple_repeat 2 44 0 4710 119 62 9 chr11 120167071 120167810 -28615662 - LTR17 LTR ERV1 0 780 3 225 0 0 0 chr11 120167812 120167837 -28615635 + (TTCC)n Simple_repeat Simple_repeat 1 25 0 1722 176 24 7 chr11 120167838 120168133 -28615339 - AluJb SINE Alu -12 300 1 5778 171 8 16 chr11 120168133 120168743 -28614729 - MSTA-int LTR MaLR -681 970 370 2171 135 0 0 chr11 120168743 120169040 -28614432 + AluSp SINE Alu 1 297 -16 5778 171 8 16 chr11 120169040 120169407 -28614065 - MSTA-int LTR MaLR -1281 370 1 1969 154 78 34 chr11 120169407 120169817 -28613655 - MSTA LTR MaLR 0 428 1 388 194 31 41 chr11 120169826 120169924 -28613548 + LTR50 LTR ERVL 699 795 0 424 314 71 21 chr11 120170255 120170494 -28612978 + HERVL LTR ERVL 397 689 -4838 368 322 25 57 chr11 120170663 120170759 -28612713 + HERVL LTR ERVL 956 1054 -4600 2266 132 0 34 chr11 120170759 120171108 -28612364 - MER1B DNA MER1_type 0 337 1 368 322 25 57 chr11 120171108 120171377 -28612095 + HERVL LTR ERVL 1054 1257 -4397 27 0 0 0 chr11 120171377 120171404 -28612068 + AT_rich Low_complexity Low_complexity 1 27 0 2091 130 0 10 chr11 120171404 120171697 -28611775 - AluSq SINE Alu -22 291 2 281 216 0 0 chr11 120171752 120171803 -28611669 - Charlie2 DNA MER1_type -2811 51 1 339 25 0 0 chr11 120171970 120172010 -28611462 + (CA)n Simple_repeat Simple_repeat 2 41 0 2211 117 0 3 chr11 120172628 120172935 -28610537 - AluSg SINE Alu -4 306 1 2121 64 11 11 chr11 120172998 120173281 -28610191 - L1PA7 LINE L1 0 6154 5872 24 0 0 0 chr11 120173499 120173523 -28609949 + AT_rich Low_complexity Low_complexity 1 24 0 1673 167 10 43 chr11 120173831 120174136 -28609336 + AluJb SINE Alu 1 295 -17 1627 186 36 16 chr11 120174137 120174443 -28609029 + AluJb SINE Alu 1 312 0 244 204 182 23 chr11 120175024 120175112 -28608360 + L1MCa LINE L1 1866 1967 -4459 2025 114 0 29 chr11 120175115 120175281 -28608191 - AluSg SINE Alu -11 299 145 2171 100 14 3 chr11 120175281 120175570 -28607902 - AluSp SINE Alu -21 292 1 2025 114 0 29 chr11 120175570 120175710 -28607762 - AluSg SINE Alu -165 145 2 294 63 127 127 chr11 120175791 120175854 -28607618 - MER41B LTR ERV1 -8 627 565 2537 58 0 3 chr11 120175854 120176166 -28607306 + AluY SINE Alu 1 311 0 3854 126 17 51 chr11 120176367 120176431 -28607041 - MER41B LTR ERV1 -8 627 562 2422 64 0 10 chr11 120176431 120176744 -28606728 + AluY SINE Alu 1 310 -1 3854 126 17 51 chr11 120176744 120177328 -28606144 - MER41B LTR ERV1 -73 562 1 834 231 82 21 chr11 120177329 120177610 -28605862 + L1MCa LINE L1 2125 2422 -4185 721 172 31 0 chr11 120177628 120177756 -28605716 + AluJb SINE Alu 2 133 -179 703 165 69 83 chr11 120177761 120177979 -28605493 + L1MCa LINE L1 2380 2594 -4013 2410 79 3 3 chr11 120178227 120178530 -28604942 - AluSp SINE Alu -10 303 1 303 263 103 93 chr11 120178869 120179189 -28604283 - MLT1J LTR MaLR 0 511 185 2421 181 12 2 chr11 120179189 120179619 -28603853 - MER57B LTR ERV1 0 434 1 303 263 103 93 chr11 120179619 120179686 -28603786 - MLT1J LTR MaLR -326 185 120 2342 99 3 10 chr11 120180516 120180828 -28602644 - AluSx SINE Alu -2 310 1 193 167 0 0 chr11 120180979 120181015 -28602457 - L2 LINE L2 0 3313 3278 2433 76 23 0 chr11 120181326 120181627 -28601845 - AluY SINE Alu -3 308 1 735 168 50 0 chr11 120181798 120181917 -28601555 + FLAM_C SINE Alu 3 127 -16 25 31 0 0 chr11 120181917 120181949 -28601523 + AT_rich Low_complexity Low_complexity 1 32 0 728 139 74 0 chr11 120181949 120182071 -28601401 - FLAM_C SINE Alu -11 132 2 1457 302 98 31 chr11 120182299 120183137 -28600335 - L2 LINE L2 0 3313 2402 2352 104 51 23 chr11 120183137 120183491 -28599981 + THE1B LTR MaLR 1 364 0 1457 302 98 31 chr11 120183491 120183692 -28599780 - L2 LINE L2 -911 2402 2216 428 287 6 44 chr11 120183702 120183761 -28599711 - L2 LINE L2 -1291 2023 1963 2550 63 0 0 chr11 120183761 120184062 -28599410 - AluY SINE Alu -10 301 1 428 287 6 44 chr11 120184062 120184183 -28599289 - L2 LINE L2 -1351 1963 1850 323 331 24 16 chr11 120184226 120184353 -28599119 + L2 LINE L2 3137 3264 -8 2132 114 10 0 chr11 120184588 120184887 -28598585 + AluSx SINE Alu 3 304 -8 255 302 115 21 chr11 120184898 120184994 -28598478 - HAL1 LINE L1 -2103 404 300 927 108 13 6 chr11 120185761 120185918 -28597554 + (TTC)n Simple_repeat Simple_repeat 2 159 0 1876 123 22 0 chr11 120185923 120186192 -28597280 - AluSx SINE Alu -37 275 1 514 101 124 11 chr11 120186194 120186283 -28597189 - MER41B LTR ERV1 -446 189 91 1545 193 0 34 chr11 120186898 120187069 -28596403 + AluJo SINE Alu 1 159 -153 4097 97 0 23 chr11 120187069 120187442 -28596030 - MER41A LTR ERV1 0 554 197 2124 133 7 0 chr11 120187442 120187744 -28595728 - AluSx SINE Alu -8 304 1 4097 97 0 23 chr11 120187744 120187937 -28595535 - MER41A LTR ERV1 -357 197 1 1545 193 0 34 chr11 120187937 120188061 -28595411 + AluJo SINE Alu 159 286 -26 372 256 13 0 chr11 120188614 120188692 -28594780 - ERVL LTR ERVL -488 5276 5198 654 320 24 12 chr11 120188944 120189194 -28594278 - ERVL LTR ERVL -1907 3857 3605 22 0 0 0 chr11 120189327 120189349 -28594123 + AT_rich Low_complexity Low_complexity 1 22 0 2073 133 3 3 chr11 120189369 120189670 -28593802 - AluSx SINE Alu -11 301 1 570 250 118 47 chr11 120189678 120190167 -28593305 - L1 LINE L1 -1109 5037 4487 211 295 90 0 chr11 120190676 120190754 -28592718 + L2 LINE L2 3229 3313 0 918 116 0 8 chr11 120190784 120190913 -28592559 - FLAM_A SINE Alu -5 128 1 1364 186 34 71 chr11 120191752 120191882 -28591590 + AluJo SINE Alu 1 134 -178 1815 150 10 10 chr11 120191882 120192194 -28591278 + AluSx SINE Alu 1 312 0 1364 186 34 71 chr11 120192194 120192386 -28591086 + AluJo SINE Alu 134 311 -1 1733 173 3 29 chr11 120192689 120193001 -28590471 + AluJo SINE Alu 3 306 -6 183 256 0 0 chr11 120193026 120193069 -28590403 - MIR SINE MIR -103 105 63 1945 159 96 0 chr11 120193097 120193135 -28590337 - MLT2B2 LTR ERVL 0 515 482 447 53 40 0 chr11 120193135 120193210 -28590262 + (TAGA)n Simple_repeat Simple_repeat 2 79 0 1945 159 96 0 chr11 120193210 120193594 -28589878 - MLT2B2 LTR ERVL -33 482 2 1819 164 0 0 chr11 120193595 120193869 -28589603 + AluJb SINE Alu 1 274 -38 183 162 0 0 chr11 120193911 120193948 -28589524 + CT-rich Low_complexity Low_complexity 2 38 0 561 88 0 0 chr11 120194154 120194234 -28589238 + (TTCC)n Simple_repeat Simple_repeat 3 82 0 212 290 48 0 chr11 120194841 120194903 -28588569 + MIR SINE MIR 36 100 -162 472 279 15 55 chr11 120194970 120195032 -28588440 - MIR SINE MIR -57 205 142 1566 139 43 56 chr11 120195032 120195334 -28588138 - AluJb SINE Alu -14 298 1 472 279 15 55 chr11 120195334 120195472 -28588000 - MIR SINE MIR -120 142 13 2413 83 0 3 chr11 120195597 120195898 -28587574 + AluSx SINE Alu 1 300 -12 458 300 41 24 chr11 120196166 120196336 -28587136 + MIR3 SINE MIR 33 205 -3 201 264 69 0 chr11 120196438 120196510 -28586962 + L3 LINE CR1 1495 1571 -6 284 275 144 42 chr11 120196580 120196747 -28586725 - MIR SINE MIR -62 146 5 201 175 0 0 chr11 120196972 120197012 -28586460 + T-rich Low_complexity Low_complexity 1 40 0 2096 106 7 3 chr11 120197202 120197504 -28585968 + AluSq SINE Alu 1 303 0 248 208 14 14 chr11 120197556 120197628 -28585844 + (TA)n Simple_repeat Simple_repeat 2 73 0 287 281 83 61 chr11 120197639 120197965 -28585507 - HAL1b LINE L1 0 2507 798 2419 82 0 25 chr11 120197967 120198284 -28585188 - AluSg SINE Alu -1 309 1 37 39 0 0 chr11 120198285 120198336 -28585136 + AT_rich Low_complexity Low_complexity 1 51 0 189 0 0 0 chr11 120198419 120198440 -28585032 + (TG)n Simple_repeat Simple_repeat 2 22 0 2377 81 0 7 chr11 120198613 120198911 -28584561 - AluY SINE Alu -15 296 1 521 196 12 30 chr11 120199027 120199195 -28584277 + CT-rich Low_complexity Low_complexity 3 167 0 477 157 124 0 chr11 120199284 120199373 -28584099 - AluJo SINE Alu -91 221 122 375 282 30 23 chr11 120199403 120199534 -28583938 - HAL1 LINE L1 -829 1678 1547 375 259 15 52 chr11 120199536 120199671 -28583801 + L2 LINE L2 3184 3313 0 389 315 104 64 chr11 120200527 120200629 -28582843 - HAL1 LINE L1 -999 1508 1412 2376 97 0 0 chr11 120200629 120200928 -28582544 - AluSg SINE Alu -11 299 1 1782 154 10 52 chr11 120200929 120201235 -28582237 - AluSx SINE Alu -19 293 1 389 315 104 64 chr11 120201235 120201256 -28582216 - HAL1 LINE L1 -1095 1412 1393 386 38 0 19 chr11 120201256 120201309 -28582163 + (TG)n Simple_repeat Simple_repeat 1 52 0 389 315 104 64 chr11 120201309 120201360 -28582112 - HAL1 LINE L1 -1114 1393 1346 2118 143 0 0 chr11 120201360 120201661 -28581811 - AluSx SINE Alu -11 301 1 389 315 104 64 chr11 120201661 120201952 -28581520 - HAL1 LINE L1 -1161 1346 1020 23 0 0 0 chr11 120202090 120202113 -28581359 + AT_rich Low_complexity Low_complexity 1 23 0 263 281 36 82 chr11 120202804 120203000 -28580472 - HAL1 LINE L1 -2308 199 13 238 164 16 16 chr11 120203011 120203072 -28580400 + (CA)n Simple_repeat Simple_repeat 1 61 0 1834 151 3 40 chr11 120203572 120203896 -28579576 + AluJo SINE Alu 1 312 0 646 301 25 17 chr11 120203959 120204198 -28579274 + MIR SINE MIR 22 262 0 2307 73 3 3 chr11 120204335 120204624 -28578848 - AluY SINE Alu -4 307 19 459 127 25 0 chr11 120204650 120204729 -28578743 - L1MB3 LINE L1 0 6183 6103 1700 158 31 0 chr11 120204748 120205002 -28578470 - AluJb SINE Alu -33 279 18 1068 198 9 23 chr11 120205002 120205161 -28578311 - L1MB3 LINE L1 -358 5825 5668 2383 86 0 3 chr11 120205161 120205464 -28578008 - AluY SINE Alu -9 302 1 1068 198 9 23 chr11 120205464 120205521 -28577951 - L1MB3 LINE L1 -515 5668 5612 217 299 75 0 chr11 120205937 120206044 -28577428 - L2 LINE L2 -13 3259 3145 1003 102 0 0 chr11 120206542 120206705 -28576767 + AluSg/x SINE Alu 154 316 0 464 176 104 32 chr11 120206707 120206832 -28576640 - L1ME4a LINE L1 -26 6095 5962 2109 123 42 142 chr11 120207320 120207737 -28575735 - MSTB LTR MaLR 0 426 60 2079 115 10 0 chr11 120207737 120208025 -28575447 - AluSg SINE Alu -19 291 1 2109 123 42 142 chr11 120208025 120208080 -28575392 - MSTB LTR MaLR -366 60 1 2313 113 0 0 chr11 120208363 120208663 -28574809 + AluSx SINE Alu 1 300 -12 2079 114 25 0 chr11 120208671 120208951 -28574521 + AluSx SINE Alu 1 287 -25 541 219 16 107 chr11 120209194 120209244 -28574228 - HAL1 LINE L1 -294 2213 2160 2391 88 0 3 chr11 120209244 120209539 -28573933 + AluSc SINE Alu 3 296 -13 541 219 16 107 chr11 120209539 120209730 -28573742 - HAL1 LINE L1 -347 2160 1994 33 0 0 23 chr11 120209800 120209817 -28573655 + AT_rich Low_complexity Low_complexity 1 17 -26 1513 173 24 28 chr11 120209817 120210106 -28573366 + AluJo SINE Alu 1 288 -24 33 0 0 23 chr11 120210106 120210132 -28573340 + AT_rich Low_complexity Low_complexity 17 43 0 892 197 0 27 chr11 120210235 120210423 -28573049 - HAL1 LINE L1 -937 1570 1388 312 209 23 47 chr11 120210519 120210605 -28572867 + MLT1J1 LTR MaLR 69 152 -294 348 318 94 6 chr11 120210847 120211017 -28572455 - HAL1 LINE L1 -2272 235 51 1191 205 117 34 chr11 120211017 120211453 -28572019 - MLT1D LTR MaLR 0 467 1 1971 124 19 56 chr11 120211611 120211933 -28571539 - AluSx SINE Alu 0 312 3 22 70 0 0 chr11 120212045 120212088 -28571384 + AT_rich Low_complexity Low_complexity 1 43 0 2178 108 3 0 chr11 120213228 120213516 -28569956 - AluSx SINE Alu 0 312 24 705 97 0 0 chr11 120213520 120213633 -28569839 + AluSg/x SINE Alu 189 301 0 258 291 238 17 chr11 120213855 120214027 -28569445 + MIR SINE MIR 19 228 -34 517 309 65 38 chr11 120214053 120214315 -28569157 - L2 LINE L2 -4 3309 3041 697 252 95 56 chr11 120214514 120214726 -28568746 + L2 LINE L2 989 1218 -2096 1682 190 55 11 chr11 120214726 120215073 -28568399 + MLT1A1 LTR MaLR 3 364 -1 697 252 95 56 chr11 120215073 120215166 -28568306 + L2 LINE L2 1218 1306 -2008 2384 113 49 64 chr11 120216261 120216670 -28566802 - MER57A LTR ERV1 0 403 1 1821 172 63 14 chr11 120216700 120217048 -28566424 - MLT1A1 LTR MaLR 0 365 1 1478 193 41 10 chr11 120217137 120217427 -28566045 - AluJb SINE Alu -13 299 1 1806 90 14 66 chr11 120217638 120217927 -28565545 - AluSc SINE Alu -6 303 30 1080 212 23 39 chr11 120218022 120218328 -28565144 - AluSx SINE Alu -1 301 1 799 205 66 24 chr11 120218447 120218613 -28564859 - AluJo SINE Alu -138 174 2 1447 134 17 72 chr11 120218826 120219116 -28564356 - AluSc SINE Alu -6 303 30 2280 122 0 0 chr11 120219208 120219512 -28563960 - AluSx SINE Alu -8 304 1 3206 264 109 42 chr11 120220190 120221637 -28561835 - L2 LINE L2 -9 3304 1794 327 145 29 14 chr11 120221654 120221723 -28561749 + L1ME LINE L1 5713 5782 -384 1371 156 74 4 chr11 120221782 120222025 -28561447 - AluJb SINE Alu -14 298 39 363 275 22 11 chr11 120222027 120222118 -28561354 - L2 LINE L2 -1510 1804 1713 754 169 169 35 chr11 120222127 120222358 -28561114 - L1ME2 LINE L1 -9 6155 5894 790 209 8 0 chr11 120222373 120222507 -28560965 - AluJo SINE Alu -176 136 2 2038 219 65 23 chr11 120222510 120223275 -28560197 - L1ME2 LINE L1 -263 5903 5103 43229 54 9 1 chr11 120223275 120229377 -28554095 - L1PA5 LINE L1 0 6154 2 2199 125 0 13 chr11 120229392 120229703 -28553769 - AluSx SINE Alu -5 307 1 1934 128 10 21 chr11 120229705 120229995 -28553477 - AluSq SINE Alu -15 298 12 780 288 23 24 chr11 120230040 120230392 -28553080 - L1 LINE L1 -984 5162 4804 4676 148 49 20 chr11 120230434 120231313 -28552159 - L1MC3 LINE L1 -164 7621 6718 775 284 42 18 chr11 120231453 120231738 -28551734 + L1M4 LINE L1 3481 3772 -2374 354 140 16 2 chr11 120231738 120231988 -28551484 + AluSx SINE Alu 1 301 0 34 24 0 0 chr11 120231994 120232035 -28551437 + AT_rich Low_complexity Low_complexity 1 41 0 348 286 43 57 chr11 120232404 120232544 -28550928 + MIR SINE MIR 20 157 -105 779 248 43 33 chr11 120232579 120232789 -28550683 - MIR SINE MIR -48 214 3 505 193 66 141 chr11 120232791 120232873 -28550599 + MSTB2 LTR MaLR 1 88 -369 2053 143 7 0 chr11 120232873 120233174 -28550298 - AluSx SINE Alu -9 303 1 505 193 66 141 chr11 120233174 120233304 -28550168 + MSTB2 LTR MaLR 88 197 -260 8873 129 12 18 chr11 120233322 120233895 -28549577 - L1MA2 LINE L1 0 6304 5729 2219 126 3 0 chr11 120233895 120234205 -28549267 + AluSx SINE Alu 1 311 -1 8873 129 12 18 chr11 120234205 120234957 -28548515 - L1MA2 LINE L1 -575 5729 4974 2041 100 76 14 chr11 120234957 120235247 -28548225 - AluSx SINE Alu -4 308 1 8873 129 12 18 chr11 120235247 120236297 -28547175 - L1MA2 LINE L1 -1330 4974 3940 2286 109 0 0 chr11 120236297 120236591 -28546881 - AluSg SINE Alu -16 294 1 8873 129 12 18 chr11 120236591 120236680 -28546792 - L1MA2 LINE L1 -2364 3940 3852 4008 101 0 4 chr11 120236682 120237195 -28546277 + MER9 LTR ERVK 1 511 0 22729 67 3 0 chr11 120237195 120239974 -28543498 + HERVK9 LTR ERVK 1 2786 -3130 2295 61 0 0 chr11 120239974 120240252 -28543220 + HERVK9 LTR ERVK 3711 3988 -1928 30393 86 16 12 chr11 120240282 120245311 -28538161 + HERV9 LTR ERV1 1 5010 -2001 12116 86 6 9 chr11 120245303 120246944 -28536528 + HERV9 LTR ERV1 6765 8399 0 * 5591 74 36 0 chr11 120246944 120247608 -28535864 + LTR12 LTR ERV1 1 688 0 1610 121 4 4 chr11 120247608 120247839 -28535633 - AluSx SINE Alu -81 231 1 1359 185 21 50 chr11 120247843 120248124 -28535348 + MSTB2 LTR MaLR 185 457 0 289 279 117 19 chr11 120248284 120248438 -28535034 + MIR3 SINE MIR 38 206 -2 1752 160 10 17 chr11 120248476 120248764 -28534708 - AluJo SINE Alu -24 288 3 1620 242 93 27 chr11 120249044 120249605 -28533867 - L1MC4a LINE L1 -1795 6013 5416 267 133 0 0 chr11 120250096 120250141 -28533331 + (TC)n Simple_repeat Simple_repeat 1 45 0 585 221 0 86 chr11 120250379 120250467 -28533005 + MIR SINE MIR 113 182 -80 2424 89 3 0 chr11 120250467 120250771 -28532701 + AluSp SINE Alu 1 305 -8 585 221 0 86 chr11 120250771 120250845 -28532627 + MIR SINE MIR 182 261 -1 361 280 42 8 chr11 120250845 120250963 -28532509 + Charlie8 DNA MER1_type 951 1072 -1345 1617 196 53 76 chr11 120251121 120251570 -28531902 + MLT1D LTR MaLR 7 445 -60 622 258 302 28 chr11 120251596 120252007 -28531465 + Charlie8 DNA MER1_type 1169 1719 -698 1866 134 4 4 chr11 120252007 120252275 -28531197 + AluSq SINE Alu 1 268 -45 622 258 302 28 chr11 120252275 120252320 -28531152 + Charlie8 DNA MER1_type 1719 1750 -667 596 307 79 11 chr11 120252506 120252556 -28530916 + Charlie8 DNA MER1_type 1713 1758 -659 2273 83 7 3 chr11 120252556 120252856 -28530616 - AluSg SINE Alu -9 301 1 596 307 79 11 chr11 120252856 120253085 -28530387 + Charlie8 DNA MER1_type 1758 2011 -406 567 304 119 26 chr11 120253155 120253728 -28529744 - L1MEc LINE L1 -3379 2836 2211 796 270 83 75 chr11 120253829 120254310 -28529162 - MLT1J LTR MaLR 0 511 27 1069 236 63 40 chr11 120254549 120254850 -28528622 - MLT1E LTR MaLR 0 593 286 690 199 91 34 chr11 120254915 120255091 -28528381 + Tigger3b DNA MER2_type 2 187 -1044 5625 131 30 16 chr11 120255091 120255329 -28528143 + Tigger3b DNA MER2_type 290 523 -2505 2220 112 0 16 chr11 120255329 120255643 -28527829 - AluY SINE Alu 0 311 3 5625 131 30 16 chr11 120255643 120256333 -28527139 + Tigger3b DNA MER2_type 523 1231 0 432 243 72 22 chr11 120256342 120256523 -28526949 - L1MEc LINE L1 -5111 1285 1096 241 201 43 92 chr11 120256546 120256710 -28526762 + L1M4 LINE L1 2852 3007 -3139 30 27 0 0 chr11 120256723 120256760 -28526712 + AT_rich Low_complexity Low_complexity 1 37 0 1248 193 4 56 chr11 120256797 120257066 -28526406 - AluJo SINE Alu -55 257 3 1403 113 21 122 chr11 120257320 120257520 -28525952 + LTR12 LTR ERV1 1 220 -2218 2164 85 0 7 chr11 120257520 120257822 -28525650 - AluY SINE Alu 0 304 5 1403 113 21 122 chr11 120257822 120257938 -28525534 + LTR12 LTR ERV1 220 1985 -453 778 196 73 54 chr11 120257980 120258536 -28524936 + MER4A-int LTR ERV1 1 692 -5906 324 324 19 66 chr11 120258538 120258751 -28524721 + MER4A-int LTR ERV1 374 576 -6182 314 214 0 29 chr11 120258863 120258933 -28524539 + MER4A-int LTR ERV1 743 810 -5788 2296 116 0 0 chr11 120259641 120259944 -28523528 + AluY SINE Alu 1 303 -8 2226 120 0 13 chr11 120260392 120260708 -28522764 - AluSx SINE Alu 0 312 1 841 298 61 69 chr11 120261887 120262055 -28521417 + MER4A-int LTR ERV1 154 322 -8271 7353 115 22 21 chr11 120262055 120263125 -28520347 - MER11C LTR ERVK 0 1071 1 841 298 61 69 chr11 120263125 120263958 -28519514 + MER4A-int LTR ERV1 322 4514 -4079 401 280 76 78 chr11 120264050 120264517 -28518955 + MER4A-int LTR ERV1 3374 4614 -3069 742 342 41 42 chr11 120265085 120265875 -28517597 + MER4A-int LTR ERV1 2147 2897 -1750 1221 319 73 21 chr11 120266182 120267150 -28516322 + MER4A-int LTR ERV1 5633 6683 -439 207 69 0 0 chr11 120267275 120267304 -28516168 + (TAA)n Simple_repeat Simple_repeat 3 31 0 381 240 44 113 chr11 120267525 120267754 -28515718 + MER4A-int LTR ERV1 6386 6598 0 1610 168 46 46 chr11 120267756 120268102 -28515370 + MER4A LTR ERV1 1 346 -318 572 163 199 21 chr11 120268239 120268380 -28515092 + MER4C LTR ERV1 300 465 0 * 791 233 42 54 chr11 120268380 120268612 -28514860 + MLT1A1 LTR MaLR 137 365 0 922 165 0 0 chr11 120268656 120268789 -28514683 + FLAM_C SINE Alu 1 133 0 196 292 22 45 chr11 120269065 120269154 -28514318 - L2 LINE L2 -4 3268 3182 1187 128 0 0 chr11 120269545 120269717 -28513755 + AluSg/x SINE Alu 128 299 -13 201 359 50 19 chr11 120269856 120270015 -28513457 - MIR SINE MIR -75 187 24 500 338 44 4 chr11 120271558 120271783 -28511689 + MIR SINE MIR 17 250 -12 324 0 0 0 chr11 120271792 120271828 -28511644 + (CAG)n Simple_repeat Simple_repeat 2 37 0 1062 189 10 24 chr11 120272603 120272809 -28510663 - MER3 DNA MER1_type -1 208 6 188 306 0 0 chr11 120272953 120273002 -28510470 - MIR SINE MIR -56 206 158 22 0 0 0 chr11 120273081 120273103 -28510369 + AT_rich Low_complexity Low_complexity 1 22 0 448 124 21 31 chr11 120273110 120273207 -28510265 - L1PB2 LINE L1 -2 6149 6054 1659 156 0 0 chr11 120273208 120273458 -28510014 - AluSx SINE Alu -61 251 2 181 285 146 73 chr11 120273886 120274051 -28509421 + L2 LINE L2 2196 2372 -942 270 318 12 0 chr11 120274519 120274604 -28508868 + MIR3 SINE MIR 116 201 -7 2340 94 13 0 chr11 120275025 120275323 -28508149 - AluSx SINE Alu -10 302 1 1562 170 15 84 chr11 120275409 120275744 -28507728 - AluJo SINE Alu 0 312 1 1633 186 3 17 chr11 120275744 120276035 -28507437 - AluJo SINE Alu -19 293 7 998 180 0 37 chr11 120276256 120276445 -28507027 + AluJb SINE Alu 1 182 -130 651 185 75 135 chr11 120277189 120277389 -28506083 + MER5A DNA MER1_type 2 189 0 1971 140 7 0 chr11 120277698 120277984 -28505488 - AluJb SINE Alu -24 288 1 328 287 43 26 chr11 120278074 120278189 -28505283 - MIR SINE MIR -95 167 51 784 61 0 61 chr11 120278202 120278333 -28505139 - L1P4 LINE L1 -716 5450 5328 * 5096 141 58 9 chr11 120278329 120279119 -28504353 - L1PA16 LINE L1 -1 6165 5324 1745 145 6 122 chr11 120279119 120279456 -28504016 - AluSx SINE Alu -3 299 2 5096 141 58 9 chr11 120279456 120279588 -28503884 - L1PA16 LINE L1 -842 5324 5200 2117 129 3 7 chr11 120279590 120279892 -28503580 - AluSx SINE Alu -8 304 4 2007 125 4 7 chr11 120279916 120280197 -28503275 - AluSg SINE Alu -30 280 1 2260 219 22 7 chr11 120280197 120280737 -28502735 - L1P LINE L1 -815 5331 4784 1614 230 44 2 chr11 120280727 120281183 -28502289 - L1 LINE L1 -2757 3389 2915 * 2187 135 49 23 chr11 120281586 120281934 -28501538 + THE1B LTR MaLR 6 362 -2 12699 84 11 1 chr11 120281936 120283501 -28499971 + THE1B-int LTR MaLR 1 1580 0 2214 117 53 39 chr11 120283501 120283860 -28499612 + THE1B LTR MaLR 1 364 0 2240 115 38 36 chr11 120284070 120284129 -28499343 - L1P5 LINE L1 -632 5524 5467 2283 101 0 13 chr11 120284129 120284435 -28499037 - AluSq SINE Alu -11 302 1 2240 115 38 36 chr11 120284435 120285008 -28498464 - L1P5 LINE L1 -689 5467 4890 2162 120 7 0 chr11 120285026 120285318 -28498154 + AluSx SINE Alu 3 296 -16 882 129 0 0 chr11 120285318 120285458 -28498014 + (TA)n Simple_repeat Simple_repeat 2 141 0 1218 178 5 9 chr11 120285459 120285672 -28497800 + MER66A LTR ERV1 267 478 0 516 167 0 10 chr11 120285673 120285775 -28497697 - L1 LINE L1 -1488 4658 4558 764 220 91 29 chr11 120286093 120286334 -28497138 - MER112 DNA MER1_type 0 256 1 643 253 12 12 chr11 120286353 120286515 -28496957 + MIR SINE MIR 44 205 -57 1147 316 120 40 chr11 120287064 120287585 -28495887 + L2 LINE L2 2160 2638 -675 2019 151 0 3 chr11 120287585 120287884 -28495588 + AluSg SINE Alu 1 298 -12 1503 127 7 94 chr11 120287884 120288159 -28495313 + AluSc SINE Alu 47 297 -12 1147 316 120 40 chr11 120288159 120288640 -28494832 + L2 LINE L2 2637 3246 -67 1339 112 52 145 chr11 120290089 120290331 -28493141 - L1MA7 LINE L1 -2 6289 6091 2028 150 0 0 chr11 120290331 120290617 -28492855 - AluSx SINE Alu -26 286 1 1339 112 52 145 chr11 120290617 120290739 -28492733 - L1MA7 LINE L1 -200 6091 5959 3383 98 13 13 chr11 120290743 120291215 -28492257 - MER1A DNA MER1_type 0 529 58 225 233 33 0 chr11 120291488 120291548 -28491924 + L1MD3 LINE L1 6612 6673 -1322 3713 81 10 0 chr11 120292070 120292553 -28490919 + L1PA10 LINE L1 5436 5923 -245 398 149 0 0 chr11 120292555 120292622 -28490850 - L1M4 LINE L1 -389 5785 5719 * 2123 212 23 38 chr11 120292620 120293177 -28490295 + L1MD2 LINE L1 4844 5392 -754 238 296 0 25 chr11 120293317 120293398 -28490074 + L1MD2 LINE L1 5386 5464 -706 * 1455 210 72 26 chr11 120293396 120293744 -28489728 + L1MD2 LINE L1 5769 6132 -227 2194 115 6 3 chr11 120293744 120294056 -28489416 + AluSq SINE Alu 1 313 0 304 276 185 30 chr11 120294880 120295112 -28488360 + L3b LINE CR1 1105 1372 -211 221 305 85 64 chr11 120295196 120295337 -28488135 + MIR3 SINE MIR 43 186 -22 493 259 80 80 chr11 120295346 120295608 -28487864 - MIR SINE MIR 0 262 1 2085 102 25 0 chr11 120295689 120295989 -28487483 - AluSx SINE Alu 0 307 1 579 282 246 36 chr11 120296285 120296704 -28486768 + L3 LINE CR1 1043 1549 -28 204 327 0 0 chr11 120296707 120296759 -28486713 + L2 LINE L2 3219 3270 -2 1996 133 30 10 chr11 120297196 120297498 -28485974 - AluSx SINE Alu -4 308 1 23 68 0 0 chr11 120298416 120298460 -28485012 + AT_rich Low_complexity Low_complexity 1 44 0 2280 92 3 0 chr11 120299300 120299594 -28483878 - AluSg SINE Alu -15 295 1 680 211 14 0 chr11 120299886 120300028 -28483444 + MIR SINE MIR 117 260 -2 322 299 204 15 chr11 120300055 120300256 -28483216 - MIR SINE MIR -13 249 11 217 277 80 54 chr11 120301396 120301508 -28481964 - MIR SINE MIR -77 185 71 598 190 102 32 chr11 120301709 120301903 -28481569 - HsTC2 DNA Tc2 -4 1894 1682 2025 160 0 3 chr11 120301903 120302215 -28481257 + AluJb SINE Alu 1 311 -1 598 190 102 32 chr11 120302215 120302236 -28481236 - HsTC2 DNA Tc2 -216 1682 1664 * 807 234 166 17 chr11 120302225 120302580 -28480892 - HsTC2 DNA Tc2 -1483 415 8 272 240 93 62 chr11 120304322 120304451 -28479021 - L2 LINE L2 -6 3307 3175 1857 159 0 45 chr11 120304588 120304902 -28478570 - AluJb SINE Alu -12 300 1 1857 194 46 33 chr11 120304936 120305327 -28478145 - MSTD LTR MaLR 0 396 1 1330 226 133 34 chr11 120305656 120306124 -28477348 - MLT1G LTR MaLR -8 582 69 2105 117 0 7 chr11 120307683 120307981 -28475491 - AluSx SINE Alu -16 296 1 209 375 62 0 chr11 120307999 120308095 -28475377 + L2 LINE L2 3211 3312 -1 351 211 95 11 chr11 120308836 120308931 -28474541 + LTR37B LTR ERV1 9 111 -357 757 259 6 0 chr11 120308966 120309132 -28474340 + MER58B DNA MER1_type 175 341 0 771 234 45 41 chr11 120309239 120309508 -28473964 + LTR37B LTR ERV1 196 465 -3 220 254 0 60 chr11 120309541 120309608 -28473864 + MIR SINE MIR 98 160 -102 2167 64 53 11 chr11 120310347 120310630 -28472842 - AluY SINE Alu -16 295 1 2198 113 13 7 chr11 120310724 120311034 -28472438 - AluSx SINE Alu 0 312 1 296 253 33 55 chr11 120311295 120311386 -28472086 + L2 LINE L2 3225 3313 0 298 245 66 106 chr11 120313064 120313166 -28470306 - Charlie8 DNA MER1_type -103 227 131 2479 79 0 0 chr11 120313166 120313471 -28470001 - AluY SINE Alu -6 305 1 298 245 66 106 chr11 120313471 120313519 -28469953 - Charlie8 DNA MER1_type -199 131 83 1835 170 0 34 chr11 120313654 120313977 -28469495 - AluJb SINE Alu 0 312 1 355 344 124 23 chr11 120314479 120314697 -28468775 + L2 LINE L2 2854 3093 -179 407 271 86 49 chr11 120315170 120315623 -28467849 - L2 LINE L2 0 3313 2708 327 311 118 6 chr11 120315619 120315780 -28467692 - MIR SINE MIR -25 237 59 * 260 288 137 22 chr11 120315782 120315921 -28467551 + MIR SINE MIR 102 256 -6 248 269 64 0 chr11 120316063 120316141 -28467331 + MIR3 SINE MIR 111 193 -15 466 287 48 30 chr11 120317437 120317604 -28465868 - MER5A DNA MER1_type -5 184 15 364 237 85 17 chr11 120317941 120318059 -28465413 + L2 LINE L2 3183 3308 -5 597 315 30 17 chr11 120318522 120318757 -28464715 + MIR SINE MIR 8 245 -17 227 182 76 45 chr11 120318858 120318924 -28464548 + MIR SINE MIR 84 151 -111 304 244 22 44 chr11 120320748 120320838 -28462634 - MLT1J2 LTR MaLR -21 429 342 374 157 14 14 chr11 120320929 120320999 -28462473 - MLT1J2 LTR MaLR -314 136 67 216 279 0 16 chr11 120321062 120321123 -28462349 - L3 LINE CR1 -894 683 624 189 0 0 0 chr11 120321506 120321527 -28461945 + (A)n Simple_repeat Simple_repeat 1 21 0 2454 98 0 0 chr11 120321663 120321969 -28461503 - AluSq SINE Alu -7 306 1 217 222 26 26 chr11 120322067 120322184 -28461288 + GA-rich Low_complexity Low_complexity 2 118 0 3617 206 24 7 chr11 120322630 120323266 -28460206 - L1 LINE L1 -1095 5051 4396 207 0 0 0 chr11 120323266 120323289 -28460183 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 3617 206 24 7 chr11 120323289 120323486 -28459986 - L1 LINE L1 -1750 4396 4204 3432 201 113 13 chr11 120323619 120325163 -28458309 + L1ME1 LINE L1 4503 6332 -2 266 271 24 12 chr11 120325436 120325521 -28457951 + MIR SINE MIR 33 118 -144 352 113 75 0 chr11 120325521 120325574 -28457898 + MER101 LTR ERV1 1 57 -417 2022 145 128 3 chr11 120325574 120325925 -28457547 + MER101 LTR ERV1 25 419 -55 334 264 36 9 chr11 120325947 120326057 -28457415 + MIR SINE MIR 150 262 0 447 279 93 30 chr11 120326145 120326382 -28457090 + L1ME4a LINE L1 5752 6003 -118 2568 109 29 5 chr11 120327651 120328026 -28455446 - L1PA11 LINE L1 0 6174 5791 2348 104 3 0 chr11 120328129 120328438 -28455034 + AluSx SINE Alu 1 310 -2 330 293 45 52 chr11 120328505 120328686 -28454786 - L1ME4a LINE L1 -209 5912 5732 738 183 148 0 chr11 120328686 120328828 -28454644 + FRAM SINE Alu 1 163 -3 330 293 45 52 chr11 120328828 120328933 -28454539 - L1ME4a LINE L1 -389 5732 5628 269 212 242 20 chr11 120329039 120329138 -28454334 - MIR SINE MIR -108 154 34 1806 198 24 59 chr11 120329149 120329574 -28453898 + MLT2D LTR ERVL 3 412 -2 413 207 23 0 chr11 120329590 120329677 -28453795 - L1ME4a LINE L1 -511 5610 5522 390 249 27 51 chr11 120330061 120330236 -28453236 - MER5A DNA MER1_type -1 188 7 249 0 73 0 chr11 120330793 120330834 -28452638 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 894 101 0 17 chr11 120330857 120330976 -28452496 - AluSp SINE Alu -76 237 121 238 184 20 0 chr11 120330978 120331027 -28452445 + MADE1 DNA Mariner 1 50 -30 720 185 8 0 chr11 120331042 120331161 -28452311 - AluSq/x SINE Alu -191 121 2 419 178 203 8 chr11 120331165 120331283 -28452189 - MER5B DNA MER1_type -37 141 1 180 0 0 0 chr11 120331359 120331379 -28452093 + (TTTTTA)n Simple_repeat Simple_repeat 3 22 0 271 293 23 38 chr11 120331838 120331971 -28451501 + L2 LINE L2 3168 3298 -15 2442 72 0 0 chr11 120332009 120332301 -28451171 - AluSc SINE Alu -13 296 5 460 307 9 57 chr11 120333104 120333332 -28450140 + L2 LINE L2 2590 2806 -508 1531 218 53 93 chr11 120333546 120334183 -28449289 - LTR9 LTR ERV1 0 612 1 486 226 41 109 chr11 120334352 120334412 -28449060 + L1MEc LINE L1 1935 1997 -4399 2271 115 0 0 chr11 120334412 120334708 -28448764 + AluSg SINE Alu 1 296 -14 486 226 41 109 chr11 120334708 120334952 -28448520 + L1MEc LINE L1 1997 2216 -4180 2704 149 18 81 chr11 120334952 120335497 -28447975 - MLT2B2 LTR ERVL 0 515 5 486 226 41 109 chr11 120335497 120335531 -28447941 + L1MEc LINE L1 2216 2251 -4145 1608 229 88 12 chr11 120335541 120335951 -28447521 - MLT1C LTR MaLR -26 441 1 2231 116 0 0 chr11 120335979 120336282 -28447190 + AluSc SINE Alu 1 303 -6 1907 221 90 11 chr11 120336284 120336828 -28446644 + L1MEc LINE L1 2234 2820 -3395 497 241 28 57 chr11 120337021 120337162 -28446310 - L2 LINE L2 0 3313 3177 225 276 236 39 chr11 120338627 120338754 -28444718 + MLT1K LTR MaLR 112 263 -325 1679 187 17 3 chr11 120339090 120339390 -28444082 - AluJb SINE Alu -8 304 1 1503 170 92 3 chr11 120340257 120340563 -28442909 - L1MB7 LINE L1 -38 6146 5814 8250 198 36 30 chr11 120340680 120342152 -28441320 - L1MB4 LINE L1 -75 6341 4879 1473 213 3 10 chr11 120342152 120342443 -28441029 + AluJo SINE Alu 1 289 -23 8250 198 36 30 chr11 120342443 120343197 -28440275 - L1MB4 LINE L1 -1537 4879 4131 2401 76 0 3 chr11 120343197 120343499 -28439973 - AluY SINE Alu -6 305 5 8250 198 36 30 chr11 120343499 120344292 -28439180 - L1MB4 LINE L1 -2285 4131 3309 1538 221 65 42 chr11 120344304 120345135 -28438337 - L1MB4 LINE L1 -3629 2753 1919 195 42 0 0 chr11 120345193 120345217 -28438255 + (TG)n Simple_repeat Simple_repeat 1 24 0 583 239 27 26 chr11 120345902 120346148 -28437324 + MER5C DNA MER1_type 3 324 0 445 279 86 0 chr11 120346156 120346296 -28437176 - MIR SINE MIR -105 157 6 22 35 0 0 chr11 120347013 120347042 -28436430 + AT_rich Low_complexity Low_complexity 1 29 0 382 288 27 0 chr11 120347738 120347849 -28435623 - MIR SINE MIR -77 185 72 225 0 0 0 chr11 120349238 120349263 -28434209 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 521 254 6 75 chr11 120350220 120350393 -28433079 - MER5B DNA MER1_type -1 177 17 371 125 192 87 chr11 120350837 120350884 -28432588 - MER103 DNA DNA -50 116 75 2149 123 3 16 chr11 120350884 120351200 -28432272 - AluSx SINE Alu 0 312 1 371 125 192 87 chr11 120351200 120351256 -28432216 - MER103 DNA DNA -91 75 2 1821 190 156 26 chr11 120351340 120351808 -28431664 + MLT1F LTR MaLR 14 542 0 340 219 148 0 chr11 120351815 120351951 -28431521 + MIR SINE MIR 103 262 0 408 327 65 30 chr11 120352402 120352601 -28430871 + L2 LINE L2 2538 2743 -571 201 294 47 0 chr11 120352659 120352744 -28430728 + L2 LINE L2 2871 2959 -313 455 366 95 23 chr11 120353105 120353578 -28429894 + L2 LINE L2 2248 2754 -560 294 143 0 0 chr11 120354992 120355041 -28428431 + (TAGG)n Simple_repeat Simple_repeat 3 51 0 2215 129 3 3 chr11 120355183 120355493 -28427979 + AluSx SINE Alu 1 310 -2 274 273 86 23 chr11 120355624 120355752 -28427720 + MIR SINE MIR 94 229 -33 410 294 5 81 chr11 120356213 120356347 -28427125 + MIR SINE MIR 12 155 -107 2066 114 7 11 chr11 120356347 120356628 -28426844 + AluSx SINE Alu 1 280 -32 192 40 0 0 chr11 120356630 120356655 -28426817 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 410 294 5 81 chr11 120356655 120356714 -28426758 + MIR SINE MIR 156 193 -69 2244 85 0 31 chr11 120356906 120357200 -28426272 - AluSc SINE Alu -24 285 1 218 266 0 0 chr11 120357201 120357265 -28426207 + MIR SINE MIR 45 108 -100 641 274 44 22 chr11 120357866 120358092 -28425380 - MIR SINE MIR -27 235 5 8696 63 3 3 chr11 120358321 120359392 -28424080 + MER11C LTR ERVK 1 1071 0 1537 211 3 22 chr11 120360156 120360474 -28422998 + AluJo SINE Alu 1 312 0 936 163 70 8 chr11 120360604 120360795 -28422677 + MLT1G LTR MaLR 344 590 0 422 257 86 21 chr11 120361575 120361715 -28421757 - MIR3 SINE MIR -18 190 42 2227 112 0 3 chr11 120363529 120363833 -28419639 - AluSx SINE Alu -9 303 1 183 216 0 0 chr11 120363924 120363961 -28419511 + L2 LINE L2 3022 3058 -214 663 256 26 26 chr11 120364347 120364574 -28418898 + MER112 DNA MER1_type 3 229 -31 952 273 86 63 chr11 120364605 120364764 -28418708 - L1MC4 LINE L1 -3 8039 7885 2710 229 54 22 chr11 120364764 120365397 -28418075 + MER82 DNA MER2_type 1 653 0 952 273 86 63 chr11 120365397 120365904 -28417568 - L1MC4 LINE L1 -157 7885 7358 1920 156 0 17 chr11 120365920 120366222 -28417250 + AluJo SINE Alu 5 301 -11 385 264 27 61 chr11 120366948 120367096 -28416376 - MIR SINE MIR -73 189 47 6295 95 26 3 chr11 120367305 120368728 -28414744 - L1PA15 LINE L1 -6 6159 4724 4662 208 81 4 chr11 120368720 120369873 -28413599 - L1PA15 LINE L1 -1911 4235 2995 565 268 177 9 chr11 120369938 120370158 -28413314 + MIR SINE MIR 6 262 0 384 352 17 22 chr11 120370839 120371018 -28412454 + (TCTG)n Simple_repeat Simple_repeat 3 180 0 539 312 37 14 chr11 120371413 120371628 -28411844 + MIR SINE MIR 28 247 -15 1830 158 25 0 chr11 120372789 120373067 -28410405 - AluJb SINE Alu -27 285 1 2178 137 106 8 chr11 120373119 120373507 -28409965 + MSTA LTR MaLR 1 426 -2 1724 167 0 37 chr11 120373508 120373808 -28409664 + AluJo SINE Alu 2 290 -22 743 236 0 13 chr11 120373813 120373970 -28409502 - MER8 DNA MER2_type -79 160 6 335 280 142 83 chr11 120374751 120374913 -28408559 - MLT1J LTR MaLR -9 502 351 3567 113 2 4 chr11 120374913 120375425 -28408047 - MER9 LTR ERVK 0 511 1 335 280 142 83 chr11 120375425 120375734 -28407738 - MLT1J LTR MaLR -160 351 3 378 332 118 23 chr11 120376077 120376381 -28407091 - L2 LINE L2 -866 2448 2116 314 253 21 42 chr11 120377101 120377196 -28406276 + L2 LINE L2 3221 3313 0 422 380 72 4 chr11 120377460 120377710 -28405762 - L3 LINE CR1 -174 1403 1137 2790 216 69 36 chr11 120378305 120379322 -28404150 - L1ME2 LINE L1 -1 6423 5369 222 260 0 65 chr11 120379474 120379551 -28403921 + MIR SINE MIR 20 91 -117 755 243 101 71 chr11 120382328 120382723 -28400749 + L2 LINE L2 2907 3313 0 1210 158 5 20 chr11 120383299 120383495 -28399977 - AluJo SINE Alu -119 193 1 2660 176 102 3 chr11 120383497 120384167 -28399305 - L1MCa LINE L1 -4810 1616 881 6727 218 68 48 chr11 120384185 120385003 -28398469 - L1ME2 LINE L1 -1336 5070 4270 2169 107 0 7 chr11 120385003 120385315 -28398157 + AluSq SINE Alu 1 310 0 6727 218 68 48 chr11 120385315 120386318 -28397154 - L1ME2 LINE L1 -2136 4270 3289 3147 165 34 7 chr11 120386318 120386906 -28396566 - MER6A DNA MER2_type -1 604 1 6727 218 68 48 chr11 120386906 120388113 -28395359 - L1ME2 LINE L1 -3117 3289 1980 2646 200 111 23 chr11 120388126 120389767 -28393705 - L1ME2 LINE L1 -4478 1928 12 297 270 10 30 chr11 120389997 120390097 -28393375 + MIR SINE MIR 155 252 -10 289 274 74 21 chr11 120390126 120390221 -28393251 + L2 LINE L2 3141 3240 -32 2253 99 3 0 chr11 120390860 120391152 -28392320 + AluSp SINE Alu 1 293 -20 1698 144 11 14 chr11 120391578 120391855 -28391617 + AluSx SINE Alu 34 309 -3 544 313 0 31 chr11 120397304 120397496 -28385976 - MIR SINE MIR -55 207 22 22 35 0 0 chr11 120398367 120398396 -28385076 + AT_rich Low_complexity Low_complexity 1 29 0 346 271 70 54 chr11 120398801 120398930 -28384542 - MIR SINE MIR -104 158 28 584 202 67 82 chr11 120400252 120400519 -28382953 + LTR37A LTR ERV1 19 281 -145 338 229 0 62 chr11 120400534 120400630 -28382842 + L1MC4 LINE L1 6614 6703 -1339 393 265 0 0 chr11 120400646 120400816 -28382656 + (TA)n Simple_repeat Simple_repeat 2 171 0 577 106 78 64 chr11 120400824 120400965 -28382507 + LTR37A LTR ERV1 284 426 0 31 44 0 0 chr11 120401803 120401848 -28381624 + AT_rich Low_complexity Low_complexity 1 45 0 412 237 105 9 chr11 120402389 120402503 -28380969 - L2 LINE L2 0 3313 3189 290 236 124 0 chr11 120403198 120403287 -28380185 + L2 LINE L2 3141 3240 -32 2112 64 0 4 chr11 120404487 120404753 -28378719 + AluY SINE Alu 39 303 -8 2209 120 0 0 chr11 120405498 120405798 -28377674 + AluSx SINE Alu 1 300 -12 967 112 37 27 chr11 120406629 120406817 -28376655 + L1MA8 LINE L1 5960 6149 -142 298 371 95 14 chr11 120406858 120407068 -28376404 + MIR SINE MIR 20 246 -16 199 211 14 28 chr11 120408301 120408372 -28375100 + GA-rich Low_complexity Low_complexity 4 73 0 209 333 0 0 chr11 120408772 120408826 -28374646 + L2 LINE L2 3210 3263 -9 1301 220 36 36 chr11 120409069 120409488 -28373984 + L1ME LINE L1 54 472 -5598 321 241 144 35 chr11 120409933 120410107 -28373365 + MIR SINE MIR 29 221 -41 15964 21 15 0 chr11 120410312 120412949 -28370523 + L1PA4 LINE L1 3504 6152 -3 578 101 263 10 chr11 120413158 120413257 -28370215 - FLAM_C SINE Alu -9 124 1 6625 167 40 179 chr11 120414344 120416353 -28367119 + MER52A LTR ERV1 8 1278 0 21 36 0 0 chr11 120416683 120416711 -28366761 + AT_rich Low_complexity Low_complexity 1 28 0 10499 186 49 16 chr11 120417202 120417362 -28366110 + Cheshire DNA MER1_type 1 154 -2266 2038 115 34 24 chr11 120417362 120417658 -28365814 + AluSq SINE Alu 1 299 -14 10499 186 49 16 chr11 120417658 120419839 -28363633 + Cheshire DNA MER1_type 154 2420 0 180 243 216 36 chr11 120420022 120420133 -28363339 - MIR3 SINE MIR -42 166 36 289 116 0 23 chr11 120420256 120420299 -28363173 - L2 LINE L2 -90 3223 3182 342 308 146 67 chr11 120420400 120420893 -28362579 - L2 LINE L2 -1837 1477 946 22 35 0 0 chr11 120423558 120423587 -28359885 + AT_rich Low_complexity Low_complexity 1 29 0 254 322 22 0 chr11 120423787 120423877 -28359595 + MIR SINE MIR 161 252 -10 186 103 0 0 chr11 120423888 120423917 -28359555 + (CAT)n Simple_repeat Simple_repeat 3 31 0 186 296 0 0 chr11 120424479 120424523 -28358949 + L2 LINE L2 3265 3308 -5 21 57 0 0 chr11 120426915 120426950 -28356522 + AT_rich Low_complexity Low_complexity 1 35 0 2237 46 0 36 chr11 120427815 120428125 -28355347 + AluY SINE Alu 15 314 0 303 331 110 0 chr11 120431560 120431687 -28351785 + MIR SINE MIR 11 151 -111 869 207 6 11 chr11 120432048 120432227 -28351245 - AluJo SINE Alu -24 288 111 186 43 0 0 chr11 120432343 120432366 -28351106 + (T)n Simple_repeat Simple_repeat 1 23 0 1480 195 80 37 chr11 120432577 120432911 -28350561 - L1ME3A LINE L1 0 6170 5817 2341 98 3 13 chr11 120432911 120433227 -28350245 - AluSp SINE Alu 0 313 1 1480 195 80 37 chr11 120433227 120433266 -28350206 - L1ME3A LINE L1 -353 5817 5781 244 157 10 106 chr11 120434203 120434401 -28349071 + (TAGTG)n Simple_repeat Simple_repeat 1 179 0 276 145 5 110 chr11 120434827 120435027 -28348445 + (TAGTG)n Simple_repeat Simple_repeat 1 179 0 310 135 5 110 chr11 120435082 120435282 -28348190 + (TAGTG)n Simple_repeat Simple_repeat 1 179 0 1392 174 60 37 chr11 120435448 120435746 -28347726 - AluJo SINE Alu -4 308 4 666 248 0 7 chr11 120435748 120435885 -28347587 - AluJo SINE Alu -176 136 1 604 286 71 17 chr11 120435986 120436224 -28347248 - L1MEc LINE L1 -4599 1797 1547 2330 108 0 6 chr11 120436224 120436538 -28346934 + AluSq SINE Alu 1 312 -1 310 273 86 23 chr11 120436669 120436797 -28346675 + MIR SINE MIR 94 229 -33 462 308 4 90 chr11 120437258 120437392 -28346080 + MIR SINE MIR 12 156 -106 2046 114 7 11 chr11 120437392 120437673 -28345799 + AluSx SINE Alu 1 280 -32 192 40 0 0 chr11 120437675 120437700 -28345772 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 462 308 4 90 chr11 120437700 120437796 -28345676 + MIR SINE MIR 157 225 -37 2216 85 0 34 chr11 120437951 120438246 -28345226 - AluSc SINE Alu -24 285 1 236 266 0 0 chr11 120438247 120438311 -28345161 + MIR SINE MIR 45 108 -100 709 274 44 22 chr11 120438912 120439138 -28344334 - MIR SINE MIR -27 235 5 9128 62 3 3 chr11 120439367 120440438 -28343034 + MER11C LTR ERVK 1 1071 0 1556 208 3 22 chr11 120441202 120441520 -28341952 + AluJo SINE Alu 1 312 0 929 163 70 8 chr11 120441650 120441841 -28341631 + MLT1G LTR MaLR 344 590 0 465 257 86 21 chr11 120442621 120442761 -28340711 - MIR3 SINE MIR -18 190 42 2208 112 0 3 chr11 120444575 120444879 -28338593 - AluSx SINE Alu -9 303 1 196 216 0 0 chr11 120444970 120445007 -28338465 + L2 LINE L2 3022 3058 -214 680 256 26 26 chr11 120445393 120445620 -28337852 + MER112 DNA MER1_type 3 229 -31 979 273 86 63 chr11 120445651 120445810 -28337662 - L1MC4 LINE L1 -3 8039 7885 2856 229 54 22 chr11 120445810 120446443 -28337029 + MER82 DNA MER2_type 1 653 0 979 273 86 63 chr11 120446443 120446950 -28336522 - L1MC4 LINE L1 -157 7885 7358 1903 156 0 17 chr11 120446966 120447268 -28336204 + AluJo SINE Alu 5 301 -11 426 264 27 61 chr11 120447994 120448142 -28335330 - MIR SINE MIR -73 189 47 6596 95 26 3 chr11 120448351 120449774 -28333698 - L1PA15 LINE L1 -6 6159 4724 5122 205 81 4 chr11 120449774 120450919 -28332553 - L1PA15 LINE L1 -1919 4227 2995 549 268 177 9 chr11 120450984 120451204 -28332268 + MIR SINE MIR 6 262 0 384 352 17 22 chr11 120451885 120452064 -28331408 + (TCTG)n Simple_repeat Simple_repeat 3 180 0 531 322 21 38 chr11 120452459 120452698 -28330774 + MIR SINE MIR 28 262 0 1815 158 25 0 chr11 120453835 120454113 -28329359 - AluJb SINE Alu -27 285 1 2364 137 106 8 chr11 120454165 120454553 -28328919 + MSTA LTR MaLR 1 426 -2 1708 167 0 37 chr11 120454554 120454854 -28328618 + AluJo SINE Alu 2 290 -22 801 236 0 13 chr11 120454859 120455016 -28328456 - MER8 DNA MER2_type -79 160 6 487 280 142 83 chr11 120455797 120455959 -28327513 - MLT1J LTR MaLR -9 502 351 3826 113 2 4 chr11 120455959 120456471 -28327001 - MER9 LTR ERVK 0 511 1 487 280 142 83 chr11 120456471 120456780 -28326692 - MLT1J LTR MaLR -160 351 3 2643 152 19 26 chr11 120457235 120457664 -28325808 - MSTB LTR MaLR 0 426 1 358 242 75 143 chr11 120457851 120458259 -28325213 + L1MC4a LINE L1 5650 6019 -102 2211 120 0 3 chr11 120458259 120458560 -28324912 - AluSx SINE Alu -12 300 1 358 242 75 143 chr11 120458560 120458655 -28324817 + L1MC4a LINE L1 6019 6119 -2 243 241 214 7 chr11 120458676 120458821 -28324651 + L1ME4a LINE L1 5944 6118 -3 502 356 27 8 chr11 120459108 120459369 -28324103 - L3 LINE CR1 -4 1573 1308 356 200 0 15 chr11 120459747 120459812 -28323660 + LTR67 LTR ERVL 494 557 0 322 270 95 108 chr11 120459812 120460108 -28323364 - L3 LINE CR1 -594 983 692 242 211 282 0 chr11 120460172 120460243 -28323229 + L1ME1 LINE L1 5484 5574 -588 22 0 0 0 chr11 120460254 120460276 -28323196 + AT_rich Low_complexity Low_complexity 1 22 0 2167 117 7 3 chr11 120460287 120460587 -28322885 + AluSc SINE Alu 2 302 -7 4562 126 41 70 chr11 120460638 120461447 -28322025 - LTR1 LTR ERV1 0 785 1 342 307 86 13 chr11 120461529 120461713 -28321759 + L1ME1 LINE L1 5769 5965 -205 571 321 62 10 chr11 120461930 120462139 -28321333 + MIR SINE MIR 32 251 -11 1329 214 74 34 chr11 120462683 120463034 -28320438 + MLT1A1 LTR MaLR 1 365 0 191 333 112 60 chr11 120463153 120463438 -28320034 + L2 LINE L2 2580 2879 -435 2384 263 28 72 chr11 120463656 120464566 -28318906 + L1PA15 LINE L1 3 871 -5916 15673 198 30 35 chr11 120464638 120470256 -28313216 + L1PA15 LINE L1 1245 6816 0 1311 93 6 0 chr11 120470508 120470690 -28312782 - L1PA6 LINE L1 -2 6152 5970 7187 51 0 3 chr11 120470517 120471555 -28311917 - L1PA6 LINE L1 -11 6143 5106 27500 32 3 0 chr11 120471563 120475695 -28307777 - L1PA4 LINE L1 -3 6152 2009 15137 56 0 9 chr11 120475687 120477594 -28305878 + L1PA4 LINE L1 123 2012 -4134 * 16288 54 3 1 chr11 120477590 120479681 -28303791 - L1PA6 LINE L1 -1029 5117 3023 674 333 84 22 chr11 120479743 120480266 -28303206 + L2 LINE L2 2725 3272 0 261 328 74 25 chr11 120480446 120480568 -28302904 + L2 LINE L2 3144 3271 -1 221 416 15 7 chr11 120480562 120480699 -28302773 - L2 LINE L2 -440 2874 2737 * 1981 124 24 10 chr11 120480710 120481008 -28302464 - AluSx SINE Alu -10 302 1 1602 93 5 0 chr11 120481053 120481258 -28302214 - AluSp SINE Alu -22 291 86 1899 227 82 60 chr11 120481270 120481858 -28301614 - L1MC4a LINE L1 -40 7768 5709 578 331 99 30 chr11 120481939 120482443 -28301029 - L2 LINE L2 -660 2654 2116 272 156 5 106 chr11 120483531 120483730 -28299742 + (TAGTG)n Simple_repeat Simple_repeat 1 179 0 310 135 5 110 chr11 120483785 120483985 -28299487 + (TAGTG)n Simple_repeat Simple_repeat 1 179 0 1392 185 57 34 chr11 120484151 120484449 -28299023 - AluJo SINE Alu -4 308 4 616 248 0 7 chr11 120484451 120484588 -28298884 - AluJo SINE Alu -176 136 1 2602 269 75 25 chr11 120484694 120484927 -28298545 - L1ME LINE L1 -4481 1599 1379 2288 107 0 7 chr11 120484927 120485236 -28298236 + AluSq SINE Alu 1 307 -6 2602 269 75 25 chr11 120485236 120486425 -28297047 - L1ME LINE L1 -4701 1379 139 2155 213 31 35 chr11 120486474 120487017 -28296455 - L1MC2 LINE L1 0 7967 6154 204 40 0 0 chr11 120487982 120488007 -28295465 + (TTG)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chr11 120488409 120488431 -28295041 + AT_rich Low_complexity Low_complexity 1 22 0 1820 97 0 26 chr11 120488515 120488784 -28294688 + L1PA8A LINE L1 5857 6118 -13 21 36 0 0 chr11 120489064 120489092 -28294380 + AT_rich Low_complexity Low_complexity 1 28 0 2857 19 0 0 chr11 120489159 120489475 -28293997 - AluYb8 SINE Alu -2 316 1 764 236 199 23 chr11 120490556 120490772 -28292700 - MIR SINE MIR 0 262 9 2177 95 0 14 chr11 120491237 120491531 -28291941 - AluSq SINE Alu -23 290 1 280 311 183 12 chr11 120493356 120493562 -28289910 + MIR SINE MIR 19 257 -5 1013 263 63 11 chr11 120493852 120494137 -28289335 + MLT1F1 LTR MaLR 268 567 0 819 330 124 7 chr11 120494153 120494605 -28288867 + L2 LINE L2 2808 3312 -1 316 308 41 63 chr11 120495075 120495296 -28288176 - L1MC4 LINE L1 -1 8041 7826 541 271 7 0 chr11 120495326 120495485 -28287987 - L1ME2 LINE L1 -1 6165 6003 1865 176 65 56 chr11 120495486 120495935 -28287537 + LTR55 LTR ERV 1 453 -95 2762 199 52 70 chr11 120495966 120496544 -28286928 - L1ME2 LINE L1 -144 6020 5434 2190 121 3 0 chr11 120496544 120496842 -28286630 - AluSx SINE Alu -13 299 1 2762 199 52 70 chr11 120496842 120497658 -28285814 - L1ME2 LINE L1 -730 5434 4651 588 170 0 0 chr11 120497662 120497762 -28285710 + Tigger5 DNA MER2_type 25 124 -2199 575 156 10 0 chr11 120497759 120497855 -28285617 + Tigger5 DNA MER2_type 2227 2323 0 * 212 152 65 22 chr11 120498503 120498549 -28284923 - MIR SINE MIR -84 178 131 248 232 134 71 chr11 120498726 120498838 -28284634 + MIR3 SINE MIR 51 169 -39 886 211 6 11 chr11 120499370 120499545 -28283927 + MER5A DNA MER1_type 7 180 -9 671 254 132 0 chr11 120500253 120500450 -28283022 - MER58A DNA MER1_type -1 223 1 200 296 278 21 chr11 120501995 120502209 -28281263 - L2 LINE L2 -341 2973 2815 1486 139 105 55 chr11 120502209 120502553 -28280919 + MER46B DNA MER2_type 1 236 0 200 296 278 21 chr11 120502553 120502672 -28280800 - L2 LINE L2 -499 2815 2554 3142 44 0 0 chr11 120502766 120503152 -28280320 + L1PA4 LINE L1 5770 6155 0 261 306 99 36 chr11 120503203 120503314 -28280158 - L2 LINE L2 -5 3267 3150 3037 175 29 37 chr11 120503584 120504207 -28279265 - L1MB5 LINE L1 -39 6135 5518 23 0 0 0 chr11 120504272 120504295 -28279177 + AT_rich Low_complexity Low_complexity 1 23 0 1254 45 0 0 chr11 120504898 120505053 -28278419 + L1PA5 LINE L1 5999 6153 -1 446 202 0 20 chr11 120505767 120505866 -28277606 + AluJ/FRAM SINE Alu 216 312 0 7513 231 28 2 chr11 120506276 120508137 -28275335 - L1PA16 LINE L1 -1837 4309 2401 5456 161 18 23 chr11 120508136 120509154 -28274318 + L1PA16 LINE L1 4325 5334 -832 * 2091 122 3 3 chr11 120509154 120509448 -28274024 - AluSx SINE Alu -18 294 1 5456 161 18 23 chr11 120509448 120510273 -28273199 + L1PA16 LINE L1 5334 6161 -5 220 195 398 35 chr11 120510956 120511069 -28272403 - L2 LINE L2 -519 2795 2642 354 271 7 65 chr11 120511151 120511306 -28272166 - L2 LINE L2 -686 2628 2483 500 254 204 36 chr11 120511340 120511674 -28271798 - L2 LINE L2 -1055 2259 1870 833 107 7 0 chr11 120512281 120512421 -28271051 + (TA)n Simple_repeat Simple_repeat 2 142 0 297 0 0 0 chr11 120512850 120512883 -28270589 + (TG)n Simple_repeat Simple_repeat 2 34 0 401 180 45 0 chr11 120513698 120513787 -28269685 - L1M4 LINE L1 -1679 4467 4375 466 285 62 7 chr11 120514051 120514195 -28269277 - L3 LINE CR1 -110 1467 1316 310 289 114 0 chr11 120514746 120514860 -28268612 - MIR SINE MIR -75 187 61 191 132 105 0 chr11 120514898 120514936 -28268536 + L2 LINE L2 3230 3271 -1 445 59 0 94 chr11 120515491 120515576 -28267896 - L1PA6 LINE L1 0 6154 6078 416 223 55 30 chr11 120515576 120515778 -28267694 + L1M4 LINE L1 3063 3269 -2877 540 284 25 0 chr11 120515783 120515980 -28267492 + L1M4 LINE L1 3418 3619 -2527 427 285 68 39 chr11 120516338 120516619 -28266853 + MLT1L LTR MaLR 164 452 -163 368 288 56 0 chr11 120516857 120516982 -28266490 - L1MC/D LINE L1 -2210 5598 5467 739 239 77 70 chr11 120517079 120517556 -28265916 - MLT1G LTR MaLR 0 590 19 271 268 39 31 chr11 120517849 120517976 -28265496 - L1MC/D LINE L1 -1537 4609 4482 429 348 100 0 chr11 120519016 120519226 -28264246 + MIR SINE MIR 32 262 0 411 200 0 0 chr11 120519972 120520037 -28263435 - AluS SINE Alu -246 65 1 1392 179 18 0 chr11 120520039 120520268 -28263204 + MLT1A1 LTR MaLR 132 364 -1 243 272 143 27 chr11 120520288 120520435 -28263037 + HAL1 LINE L1 1489 1652 -855 823 160 15 0 chr11 120521619 120521750 -28261722 - FLAM_C SINE Alu 0 133 1 207 321 18 36 chr11 120522072 120522184 -28261288 - MIR SINE MIR -65 143 34 202 328 47 0 chr11 120522439 120522503 -28260969 + L2 LINE L2 3241 3307 -6 6344 116 22 6 chr11 120523361 120526623 -28256849 + L1PA10 LINE L1 2698 6158 -10 186 262 0 24 chr11 120526903 120526945 -28256527 + MER5A DNA MER1_type 147 187 -2 236 206 98 33 chr11 120527601 120527693 -28255779 - L2 LINE L2 -70 3243 3146 411 245 94 9 chr11 120527875 120527981 -28255491 + L2 LINE L2 3195 3309 -4 262 245 196 61 chr11 120528307 120528470 -28255002 + L2 LINE L2 3036 3220 -93 2616 250 55 82 chr11 120528470 120529555 -28253917 - L1MCc LINE L1 -5326 1097 42 2043 120 7 7 chr11 120530023 120530324 -28253148 + AluSx SINE Alu 1 301 -11 435 38 0 0 chr11 120530331 120530384 -28253088 + (GGAA)n Simple_repeat Simple_repeat 4 56 0 706 293 33 21 chr11 120530429 120530671 -28252801 + MIR SINE MIR 18 262 0 4257 12 0 0 chr11 120531387 120532072 -28251400 - L1PA2 LINE L1 -418 5737 5053 3518 22 0 0 chr11 120532072 120532478 -28250994 + L1PA2 LINE L1 5744 6155 0 834 222 27 11 chr11 120532504 120532689 -28250783 - MER5A DNA MER1_type 0 189 2 195 309 85 21 chr11 120533271 120533365 -28250107 + MIR SINE MIR 45 144 -64 1028 278 125 10 chr11 120534102 120534550 -28248922 + L1MC5 LINE L1 5444 5795 -371 27 81 0 0 chr11 120534714 120534776 -28248696 + AT_rich Low_complexity Low_complexity 1 62 0 467 232 23 37 chr11 120535115 120535342 -28248130 + L1MC5 LINE L1 6546 6721 -1115 * 4345 209 78 79 chr11 120535336 120536857 -28246615 + L1M4 LINE L1 2862 4382 -1764 2458 74 0 0 chr11 120536857 120537167 -28246305 + AluY SINE Alu 1 310 -1 4345 209 78 79 chr11 120537167 120537398 -28246074 + L1M4 LINE L1 4382 4612 -1534 798 231 118 62 chr11 120537408 120537781 -28245691 + L1MC3 LINE L1 2770 3163 -2983 1359 274 48 9 chr11 120537816 120538276 -28245196 + L1ME1 LINE L1 93 570 -5826 297 252 48 29 chr11 120538287 120538390 -28245082 + L1ME1 LINE L1 4281 4385 -1830 195 184 0 0 chr11 120538429 120538467 -28245005 + (CATATA)n Simple_repeat Simple_repeat 6 43 0 1157 230 69 16 chr11 120538476 120538910 -28244562 + L1ME1 LINE L1 4400 4856 -1359 1476 144 26 30 chr11 120538962 120539226 -28244246 + Tigger1 DNA MER2_type 5 267 -2151 10254 117 73 29 chr11 120539228 120540783 -28242689 + Tigger1 DNA MER2_type 626 2267 -151 1706 162 13 10 chr11 120540783 120541092 -28242380 + AluJb SINE Alu 3 312 0 10254 117 73 29 chr11 120541092 120541252 -28242220 + Tigger1 DNA MER2_type 2267 2418 0 1828 234 38 26 chr11 120541254 120541651 -28241821 + L1ME1 LINE L1 4927 5318 -917 857 185 67 5 chr11 120541651 120541846 -28241626 + MER3 DNA MER1_type 3 209 0 1828 234 38 26 chr11 120541846 120542399 -28241073 + L1ME1 LINE L1 5318 5885 -350 569 253 90 34 chr11 120542408 120542641 -28240831 + L1ME1 LINE L1 5985 6230 -5 1704 246 113 68 chr11 120542653 120544888 -28238584 + L1MC3 LINE L1 3146 7785 0 1058 126 169 11 chr11 120544888 120545071 -28238401 - AluSc SINE Alu -10 299 88 1692 200 64 13 chr11 120545140 120545530 -28237942 + L1ME4a LINE L1 5487 5896 -270 349 262 99 17 chr11 120545526 120545759 -28237713 + L1M4 LINE L1 2367 2618 -3528 * 314 385 0 20 chr11 120546257 120546355 -28237117 + MIR SINE MIR 2 98 -164 2035 123 10 3 chr11 120546355 120546647 -28236825 - AluSc SINE Alu -15 294 1 314 385 0 20 chr11 120546647 120546696 -28236776 + MIR SINE MIR 98 146 -116 185 305 0 34 chr11 120546702 120546761 -28236711 + L2 LINE L2 3193 3249 -23 2137 125 25 25 chr11 120546784 120547143 -28236329 + MER46B DNA MER2_type 1 234 -2 296 327 103 76 chr11 120547223 120547347 -28236125 + L2 LINE L2 2406 2525 -747 833 64 0 18 chr11 120547347 120547457 -28236015 - L1PA7 LINE L1 -11 6143 6036 296 327 103 76 chr11 120547457 120547838 -28235634 + L2 LINE L2 2525 2988 -284 1534 146 91 67 chr11 120547838 120548167 -28235305 - MER1B DNA MER1_type 0 337 1 296 327 103 76 chr11 120548167 120548365 -28235107 + L2 LINE L2 2988 3179 -93 2599 101 30 3 chr11 120548695 120549060 -28234412 - THE1C LTR MaLR 0 375 1 259 206 0 15 chr11 120549096 120549164 -28234308 + L1ME4a LINE L1 6049 6115 -6 542 87 58 29 chr11 120549235 120549338 -28234134 - L1MA8 LINE L1 0 6291 6186 3909 165 60 44 chr11 120549629 120549799 -28233673 + L1MB7 LINE L1 5270 5436 -748 1584 189 31 0 chr11 120549799 120550085 -28233387 + AluJo SINE Alu 12 306 -6 3909 165 60 44 chr11 120550085 120550809 -28232663 + L1MB7 LINE L1 5436 6179 -5 1676 209 92 59 chr11 120551001 120551064 -28232408 - MLT1F LTR MaLR -3 592 533 1771 151 3 17 chr11 120551064 120551383 -28232089 - AluJb SINE Alu 0 315 1 1676 209 92 59 chr11 120551383 120551833 -28231639 - MLT1F LTR MaLR -62 533 3 26 0 0 0 chr11 120552497 120552523 -28230949 + AT_rich Low_complexity Low_complexity 1 26 0 747 204 177 18 chr11 120552523 120552743 -28230729 - MIR SINE MIR -2 260 6 196 342 114 25 chr11 120553825 120553983 -28229489 - L3b LINE CR1 -6 1577 1406 762 254 129 22 chr11 120554685 120554917 -28228555 - MIR SINE MIR -3 259 3 296 282 12 47 chr11 120554918 120555003 -28228469 + MIR SINE MIR 31 112 -150 472 271 115 16 chr11 120555187 120555379 -28228093 - MIR SINE MIR -44 218 8 196 302 0 0 chr11 120555926 120555979 -28227493 - L2 LINE L2 -4 3309 3257 347 65 0 0 chr11 120556077 120556123 -28227349 + L1MA5 LINE L1 6245 6290 -10 309 160 0 0 chr11 120556132 120556182 -28227290 - MIR SINE MIR -102 160 111 1365 233 14 0 chr11 120556242 120556530 -28226942 + MLT1A1 LTR MaLR 23 314 -51 2904 172 39 17 chr11 120556889 120557487 -28225985 + L1PA16 LINE L1 5546 6156 -10 259 235 148 17 chr11 120558825 120558940 -28224532 + L1ME4a LINE L1 5978 6107 -14 392 176 0 0 chr11 120559058 120559132 -28224340 + L1MB1 LINE L1 6084 6157 -11 212 191 103 29 chr11 120559147 120559215 -28224257 - MER5B DNA MER1_type -20 158 86 239 226 0 19 chr11 120559231 120559284 -28224188 + L3b LINE CR1 1528 1579 -4 193 115 0 0 chr11 120559450 120559476 -28223996 + (TA)n Simple_repeat Simple_repeat 1 26 0 261 119 0 0 chr11 120559484 120559526 -28223946 + (CA)n Simple_repeat Simple_repeat 1 42 0 1153 169 207 0 chr11 120559530 120559767 -28223705 - AluJo SINE Alu -16 286 1 1558 238 160 31 chr11 120560013 120560694 -28222778 - MER20B DNA MER1_type 0 783 15 22 35 0 0 chr11 120560930 120560959 -28222513 + AT_rich Low_complexity Low_complexity 1 29 0 1995 72 0 11 chr11 120561419 120561682 -28221790 - AluY SINE Alu -13 298 39 307 220 9 46 chr11 120561858 120561967 -28221505 + (TGAA)n Simple_repeat Simple_repeat 3 107 0 1254 151 23 5 chr11 120562016 120562234 -28221238 + MER50 LTR ERV1 1 222 -512 852 158 0 25 chr11 120562221 120562379 -28221093 + MER50 LTR ERV1 447 600 -134 * 217 358 179 5 chr11 120565063 120565253 -28218219 + L3b LINE CR1 1112 1334 -249 232 376 10 0 chr11 120565412 120565513 -28217959 + L3b LINE CR1 1365 1466 -117 445 294 16 8 chr11 120565723 120565849 -28217623 + MIR3 SINE MIR 66 192 -16 333 83 0 0 chr11 120566755 120566803 -28216669 + MADE1 DNA Mariner 1 48 -32 194 302 0 0 chr11 120567206 120567259 -28216213 + L2 LINE L2 3242 3294 -19 186 222 22 0 chr11 120567225 120567270 -28216202 + MIR SINE MIR 216 261 -1 * 4387 182 40 8 chr11 120567532 120568744 -28214728 + L1MB8 LINE L1 4906 6153 -25 4667 161 22 14 chr11 120569018 120570520 -28212952 - L1PB4 LINE L1 -26 6130 4472 * 7405 213 23 4 chr11 120570508 120572200 -28211272 - L1PB4 LINE L1 -2164 3982 2259 193 373 13 0 chr11 120572216 120572291 -28211181 + L2 LINE L2 3197 3272 0 7701 18 5 0 chr11 120573008 120574515 -28208957 - L1PA3 LINE L1 0 6155 4641 7504 32 5 0 chr11 120574515 120575454 -28208018 + L1PA3 LINE L1 3700 4643 -1503 189 290 0 32 chr11 120575762 120575824 -28207648 + MIR SINE MIR 16 75 -133 327 264 0 0 chr11 120575873 120575964 -28207508 + (TA)n Simple_repeat Simple_repeat 1 91 0 265 299 248 0 chr11 120578675 120578792 -28204680 + MIR SINE MIR 34 179 -83 528 261 55 28 chr11 120579824 120580042 -28203430 - MARNA DNA Mariner -152 434 211 281 282 242 32 chr11 120580054 120580306 -28203166 + L2 LINE L2 2888 3192 -121 370 87 0 87 chr11 120580313 120580382 -28203090 - MER3 DNA MER1_type -4 205 143 2965 227 44 9 chr11 120580389 120581298 -28202174 + L1ME1 LINE L1 5119 6141 -25 526 196 21 42 chr11 120581298 120581441 -28202031 - MER3 DNA MER1_type -52 157 18 803 209 51 6 chr11 120581496 120581673 -28201799 + MER58A DNA MER1_type 37 221 -3 933 319 112 24 chr11 120581736 120582559 -28200913 - L2 LINE L2 -11 3302 2398 191 267 186 12 chr11 120582577 120582663 -28200809 - MIR SINE MIR -8 254 154 183 80 0 0 chr11 120582855 120582880 -28200592 + (A)n Simple_repeat Simple_repeat 1 25 0 309 272 193 41 chr11 120584159 120584527 -28198945 - L1M2 LINE L1 -5831 1018 595 401 265 153 90 chr11 120584704 120585401 -28198071 + L1M2 LINE L1 547 1287 -5562 490 283 80 42 chr11 120586429 120586571 -28196901 + L2 LINE L2 3094 3248 -65 213 39 0 0 chr11 120586571 120586597 -28196875 + (TTG)n Simple_repeat Simple_repeat 2 27 0 490 283 80 42 chr11 120586597 120586666 -28196806 + L2 LINE L2 3248 3313 0 362 345 27 60 chr11 120586957 120587258 -28196214 + L2 LINE L2 2686 2976 -338 244 274 0 0 chr11 120587296 120587347 -28196125 + L2 LINE L2 3263 3313 0 1042 237 51 4 chr11 120587500 120587736 -28195736 - MIR SINE MIR -2 260 14 1540 168 82 21 chr11 120588315 120588595 -28194877 + AluJo SINE Alu 1 297 -15 252 252 149 56 chr11 120588607 120588714 -28194758 - L2 LINE L2 0 3272 3156 226 322 88 34 chr11 120588748 120588953 -28194519 + Charlie8 DNA MER1_type 2 217 -2200 490 274 279 20 chr11 120589384 120589883 -28193589 - L2 LINE L2 -1294 2020 1393 197 320 40 13 chr11 120590043 120590118 -28193354 - L2 LINE L2 -2059 1255 1179 2620 118 0 3 chr11 120590486 120590850 -28192622 + THE1B LTR MaLR 1 363 -1 193 324 59 37 chr11 120590852 120590988 -28192484 + L2 LINE L2 2316 2454 -860 2733 163 48 38 chr11 120591200 120591808 -28191664 + L1MB4 LINE L1 5525 6138 -42 221 311 129 14 chr11 120591826 120592035 -28191437 + L2 LINE L2 2635 2867 -447 553 282 168 15 chr11 120592496 120592698 -28190774 - MIR SINE MIR -7 255 23 540 273 106 15 chr11 120592784 120592982 -28190490 - MIR SINE MIR -35 227 12 237 280 43 32 chr11 120593536 120593629 -28189843 - MIR SINE MIR -133 129 36 21 82 0 0 chr11 120593931 120593980 -28189492 + AT_rich Low_complexity Low_complexity 1 49 0 370 260 70 0 chr11 120594077 120594177 -28189295 - MIR SINE MIR -98 164 58 263 169 0 13 chr11 120594207 120594284 -28189188 + (TA)n Simple_repeat Simple_repeat 1 76 0 6002 102 13 5 chr11 120594352 120595883 -28187589 - L1PA13 LINE L1 0 6163 4631 1228 182 4 4 chr11 120596023 120596254 -28187218 - L1MC1 LINE L1 0 6333 6103 7169 187 53 38 chr11 120596262 120597234 -28186238 - L1MCa LINE L1 -2961 3465 2509 6611 53 10 3 chr11 120597234 120597863 -28185609 - L1PA7 LINE L1 0 6154 5531 2107 94 0 4 chr11 120597863 120598138 -28185334 + AluSc SINE Alu 1 274 -35 6611 53 10 3 chr11 120598138 120598939 -28184533 - L1PA7 LINE L1 -623 5531 4689 7169 187 53 38 chr11 120598939 120601280 -28182192 - L1MCa LINE L1 -3917 2509 20 253 410 16 0 chr11 120601590 120601712 -28181760 - L2 LINE L2 0 3313 3190 207 0 0 0 chr11 120602270 120602293 -28181179 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 427 237 23 133 chr11 120602353 120602392 -28181080 - MER5B DNA MER1_type -24 154 112 2166 126 0 0 chr11 120602392 120602693 -28180779 + AluSx SINE Alu 1 301 -11 427 237 23 133 chr11 120602693 120602826 -28180646 - MER5B DNA MER1_type -66 112 1 381 223 0 131 chr11 120603637 120603767 -28179705 + L2 LINE L2 3200 3312 -1 1152 230 155 50 chr11 120603778 120604419 -28179053 + HAL1b LINE L1 413 985 -363 2179 105 34 0 chr11 120604419 120604713 -28178759 - AluSg SINE Alu -6 304 1 1152 230 155 50 chr11 120604713 120604735 -28178737 + HAL1b LINE L1 985 1003 -345 192 77 0 0 chr11 120604735 120604761 -28178711 + (TCCA)n Simple_repeat Simple_repeat 3 28 0 1152 230 155 50 chr11 120604761 120604943 -28178529 + HAL1b LINE L1 1003 1348 0 597 294 108 5 chr11 120605310 120605514 -28177958 - MIR SINE MIR -12 250 26 296 256 232 0 chr11 120605502 120605627 -28177845 - MIR SINE MIR -46 216 63 * 21 0 0 0 chr11 120605713 120605734 -28177738 + AT_rich Low_complexity Low_complexity 1 21 0 309 272 3 58 chr11 120607327 120607449 -28176023 + MIR SINE MIR 44 156 -52 201 130 22 43 chr11 120607638 120607684 -28175788 + GA-rich Low_complexity Low_complexity 2 46 0 459 200 30 24 chr11 120608666 120608831 -28174641 + GA-rich Low_complexity Low_complexity 3 168 0 235 346 125 17 chr11 120609709 120610004 -28173468 + L2 LINE L2 2328 2654 -660 1054 264 34 26 chr11 120610048 120610400 -28173072 - LTR16A LTR ERVL -1 449 95 342 267 122 28 chr11 120610940 120611120 -28172352 - HERV16-B1 LTR ERVL -1066 4419 4223 * 655 259 181 42 chr11 120611093 120611518 -28171954 - HERV16-B1 LTR ERVL -1473 4291 3808 2152 306 67 7 chr11 120611598 120612908 -28170564 - HERV16-B1 LTR ERVL -1922 3074 2019 750 264 16 11 chr11 120613053 120613235 -28170237 + MER5A DNA MER1_type 2 184 -5 1101 315 34 30 chr11 120613241 120613561 -28169911 - HERV16-B1 LTR ERVL -3465 1531 1207 2138 136 45 14 chr11 120613561 120613914 -28169558 + THE1B LTR MaLR 1 364 0 1101 315 34 30 chr11 120613914 120614091 -28169381 - HERV16-B1 LTR ERVL -3789 1207 1032 343 222 0 71 chr11 120614088 120614187 -28169285 - HERV16-B1 LTR ERVL -4449 547 456 * 370 286 47 18 chr11 120614305 120614476 -28168996 - HERV16-B1 LTR ERVL -4715 281 106 860 237 72 10 chr11 120614480 120614771 -28168701 - L1ME LINE L1 -493 5673 5365 720 209 119 84 chr11 120614772 120615116 -28168356 - MLT2B1 LTR ERVL 0 520 165 217 301 36 0 chr11 120615477 120615560 -28167912 + L2 LINE L2 1264 1349 -1965 270 311 187 55 chr11 120616667 120616929 -28166543 - L2 LINE L2 -36 3236 2935 493 272 121 25 chr11 120616929 120617168 -28166304 - MIR SINE MIR 0 262 1 237 301 36 0 chr11 120617217 120617300 -28166172 - L3 LINE CR1 -688 889 804 1063 168 5 28 chr11 120617451 120617665 -28165807 - L1MB3 LINE L1 -2 6181 5973 285 29 0 0 chr11 120617907 120617941 -28165531 + (TG)n Simple_repeat Simple_repeat 2 35 0 243 310 35 53 chr11 120618158 120618271 -28165201 + L2 LINE L2 3203 3313 0 5722 57 1 26 chr11 120618399 120619160 -28164312 - L1PA8 LINE L1 -2 6170 5429 518 296 33 13 chr11 120619328 120619480 -28163992 - L3 LINE CR1 -892 685 531 2844 226 24 11 chr11 120619646 120620279 -28163193 + MER82 DNA MER2_type 3 643 -10 240 35 0 0 chr11 120620341 120620370 -28163102 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2416 132 3 3 chr11 120620566 120620953 -28162519 - L1PA13 LINE L1 -7 6156 5770 12979 175 31 10 chr11 120620956 120621010 -28162462 - L1PB2 LINE L1 -6 6861 6810 2326 91 0 36 chr11 120621010 120621318 -28162154 - AluSq SINE Alu -16 297 1 12979 175 31 10 chr11 120621318 120626190 -28157282 - L1PB2 LINE L1 -57 6810 1817 3271 107 20 8 chr11 120626189 120626786 -28156686 - L1P4 LINE L1 -375 5786 5185 * 1997 153 0 3 chr11 120626845 120627139 -28156333 + AluSx SINE Alu 3 295 -17 27 29 0 0 chr11 120627242 120627276 -28156196 + AT_rich Low_complexity Low_complexity 1 34 0 348 325 47 19 chr11 120627419 120627932 -28155540 + L1M4 LINE L1 3405 3931 -2215 332 223 36 18 chr11 120628791 120628903 -28154569 - Charlie8 DNA MER1_type -2262 155 42 416 310 56 28 chr11 120628932 120629074 -28154398 + L2 LINE L2 3121 3266 -6 200 304 89 0 chr11 120629149 120629205 -28154267 - L3 LINE CR1 -1271 306 246 386 283 117 25 chr11 120629696 120629816 -28153656 - L2 LINE L2 0 3272 3142 1335 284 121 58 chr11 120629846 120630548 -28152924 + L3 LINE CR1 266 1011 -566 231 366 99 0 chr11 120630601 120630732 -28152740 + L2 LINE L2 3168 3311 -2 346 189 132 19 chr11 120630739 120630845 -28152627 - MIR SINE MIR -26 236 119 375 291 10 10 chr11 120630963 120631066 -28152406 - MIR SINE MIR -157 105 3 187 197 0 33 chr11 120631141 120631202 -28152270 + CT-rich Low_complexity Low_complexity 3 61 0 196 356 32 46 chr11 120631393 120631609 -28151863 + L2 LINE L2 3093 3305 -8 188 35 35 0 chr11 120631739 120631768 -28151704 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 820 276 39 31 chr11 120632144 120632398 -28151074 + MIR SINE MIR 6 261 -1 240 211 0 0 chr11 120633474 120633526 -28149946 + (CAATT)n Simple_repeat Simple_repeat 2 53 0 207 338 81 0 chr11 120633612 120633686 -28149786 - L2 LINE L2 -94 3178 3099 244 357 115 6 chr11 120633759 120633916 -28149556 - MIR SINE MIR -49 213 40 240 130 0 0 chr11 120636298 120636344 -28147128 + (TC)n Simple_repeat Simple_repeat 1 46 0 1939 128 90 35 chr11 120636675 120637020 -28146452 - THE1B LTR MaLR 0 364 1 226 361 0 0 chr11 120637552 120637635 -28145837 + L2 LINE L2 1127 1209 -2105 454 293 55 55 chr11 120637720 120638177 -28145295 - L1ME4a LINE L1 -72 6049 5593 183 364 13 0 chr11 120638479 120638556 -28144916 - L2 LINE L2 -333 2939 2862 333 290 30 38 chr11 120638598 120638729 -28144743 - MIR SINE MIR -32 230 101 243 294 12 12 chr11 120638815 120638900 -28144572 - L2 LINE L2 -459 2855 2771 344 295 90 0 chr11 120639001 120639123 -28144349 + L2 LINE L2 3139 3271 -1 3688 82 2 0 chr11 120639138 120639628 -28143844 - L1PA7 LINE L1 0 6154 5664 1031 201 122 7 chr11 120639653 120639956 -28143516 - MER63 DNA MER1_type 0 1060 723 277 368 115 37 chr11 120639963 120640425 -28143047 + L2 LINE L2 1986 2483 -831 1613 211 82 26 chr11 120640599 120641015 -28142457 + MLT1D LTR MaLR 60 498 -7 1786 220 102 36 chr11 120641139 120641671 -28141801 - MLT1F1 LTR MaLR 0 567 1 259 353 8 34 chr11 120641775 120641894 -28141578 - MIR SINE MIR -56 206 91 6664 131 28 16 chr11 120642086 120643292 -28140180 + L1PA10 LINE L1 4269 5501 -667 2259 108 3 0 chr11 120643292 120643587 -28139885 + AluSp SINE Alu 5 300 -13 6664 131 28 16 chr11 120643587 120644264 -28139208 + L1PA10 LINE L1 5501 6168 0 2251 93 0 0 chr11 120644274 120644583 -28138889 + AluSc SINE Alu 1 309 0 2276 284 57 34 chr11 120644639 120645757 -28137715 + L2 LINE L2 2057 3203 -110 207 306 0 112 chr11 120647927 120648008 -28135464 + MIR3 SINE MIR 13 75 -133 1722 157 39 0 chr11 120648008 120648294 -28135178 - AluSx SINE Alu -15 297 1 207 306 0 112 chr11 120648294 120648346 -28135126 + MIR3 SINE MIR 75 131 -77 189 0 0 0 chr11 120648575 120648596 -28134876 + (T)n Simple_repeat Simple_repeat 1 21 0 877 266 7 45 chr11 120648616 120648924 -28134548 - LTR16C LTR ERVL -55 436 141 3264 80 9 2 chr11 120649060 120649499 -28133973 + L1PA10 LINE L1 5716 6157 -11 202 330 78 10 chr11 120649601 120649704 -28133768 + L2 LINE L2 3149 3258 -14 900 280 138 21 chr11 120650904 120651332 -28132140 - L2 LINE L2 -5 3308 2831 1531 243 65 32 chr11 120651335 120651858 -28131614 + MLT1H1 LTR MaLR 1 540 -15 225 65 0 0 chr11 120651870 120651901 -28131571 + (GA)n Simple_repeat Simple_repeat 2 32 0 403 351 5 38 chr11 120652015 120652200 -28131272 - L1M4 LINE L1 -1920 4226 4048 599 288 57 6 chr11 120652465 120652642 -28130830 + MIR SINE MIR 73 258 -4 23 33 0 0 chr11 120653118 120653148 -28130324 + AT_rich Low_complexity Low_complexity 1 30 0 624 276 100 9 chr11 120653730 120653940 -28129532 + MIR SINE MIR 34 262 0 429 246 45 0 chr11 120655322 120655432 -28128040 + L2 LINE L2 3158 3272 0 28 0 0 0 chr11 120655763 120655791 -28127681 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr11 120656009 120656041 -28127431 + AT_rich Low_complexity Low_complexity 1 32 0 180 77 0 0 chr11 120656546 120656572 -28126900 + (TG)n Simple_repeat Simple_repeat 2 27 0 2431 159 44 0 chr11 120656885 120657293 -28126179 + MSTB LTR MaLR 1 426 0 8849 174 14 20 chr11 120657293 120658955 -28124517 + MSTB-int LTR MaLR 1 1651 0 2367 168 52 0 chr11 120658955 120659360 -28124112 + MSTB LTR MaLR 1 426 0 261 363 107 6 chr11 120659462 120659630 -28123842 + L2 LINE L2 2920 3104 -168 549 268 17 39 chr11 120659932 120660107 -28123365 - MIR SINE MIR -64 144 4 430 299 43 24 chr11 120662049 120662213 -28121259 + MIR3 SINE MIR 34 200 -8 276 353 69 0 chr11 120662292 120662394 -28121078 + MIR SINE MIR 65 173 -89 372 279 17 46 chr11 120662809 120663106 -28120366 - L1MB8 LINE L1 -211 5951 5669 243 150 0 0 chr11 120663273 120663313 -28120159 + MER2 DNA MER2_type 55 94 -251 1340 70 12 0 chr11 120663317 120663489 -28119983 + AluY SINE Alu 125 298 -13 622 75 11 0 chr11 120663491 120663585 -28119887 + MER2 DNA MER2_type 96 190 -155 329 207 134 0 chr11 120663641 120663723 -28119749 + L2 LINE L2 3221 3313 0 418 281 123 25 chr11 120663855 120664058 -28119414 + MIR SINE MIR 40 262 0 219 294 37 46 chr11 120664665 120664774 -28118698 + MIR SINE MIR 104 211 -51 1906 105 15 68 chr11 120664952 120665276 -28118196 - AluSg SINE Alu -3 307 1 1818 159 6 13 chr11 120666562 120666876 -28116596 - AluJb SINE Alu 0 312 1 573 274 63 32 chr11 120666965 120667155 -28116317 + MIR SINE MIR 54 249 -13 406 233 41 98 chr11 120668096 120668362 -28115110 + MER112 DNA MER1_type 5 255 -1 1606 154 75 14 chr11 120668757 120669050 -28114422 + AluJb SINE Alu 2 312 0 590 226 9 0 chr11 120669059 120669165 -28114307 + FLAM_A SINE Alu 1 107 -35 213 39 0 0 chr11 120669173 120669199 -28114273 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 763 93 9 9 chr11 120669508 120669616 -28113856 + AluSc SINE Alu 105 212 -97 422 269 39 60 chr11 120670159 120670341 -28113131 + MIR SINE MIR 14 191 -71 1919 109 8 4 chr11 120670353 120670620 -28112852 + AluSx SINE Alu 1 268 -44 195 100 0 0 chr11 120670629 120670659 -28112813 + (CAA)n Simple_repeat Simple_repeat 1 30 0 979 226 74 35 chr11 120670660 120670890 -28112582 - MIR SINE MIR -6 256 18 226 263 11 95 chr11 120670956 120671051 -28112421 - L2 LINE L2 0 3272 3186 210 292 31 0 chr11 120671499 120671564 -28111908 - L2 LINE L2 0 3313 3247 765 166 153 0 chr11 120671643 120671800 -28111672 - AluSc SINE Alu -1 308 128 657 276 42 8 chr11 120671846 120672085 -28111387 - MER115 DNA AcHobo -8 685 439 1738 111 4 0 chr11 120672260 120672495 -28110977 + AluSq SINE Alu 2 237 -76 189 154 0 0 chr11 120672782 120672821 -28110651 + A-rich Low_complexity Low_complexity 4 42 0 324 328 74 66 chr11 120673179 120673450 -28110022 - L2 LINE L2 -14 3258 2986 271 284 49 0 chr11 120673626 120673728 -28109744 + MIR SINE MIR 119 225 -37 402 274 95 57 chr11 120673777 120674218 -28109254 - MLT1J LTR MaLR -53 458 1 26 0 0 0 chr11 120674432 120674458 -28109014 + AT_rich Low_complexity Low_complexity 1 26 0 493 259 22 14 chr11 120675095 120675234 -28108238 + MIR SINE MIR 108 247 -15 2138 12 12 0 chr11 120675769 120676015 -28107457 - L1PA2 LINE L1 -1 6154 5906 2094 182 22 59 chr11 120676252 120676489 -28106983 + Charlie1b DNA MER1_type 1 245 -2516 2122 104 4 0 chr11 120676489 120676802 -28106670 - AluSc SINE Alu 0 314 1 2094 182 22 59 chr11 120676802 120677106 -28106366 + Charlie1b DNA MER1_type 245 523 0 346 196 72 0 chr11 120677117 120677214 -28106258 + L1ME4a LINE L1 5794 5897 -224 182 385 46 28 chr11 120677790 120677899 -28105573 + L2 LINE L2 3153 3263 -9 289 298 157 10 chr11 120678348 120678546 -28104926 - L2 LINE L2 -679 2635 2409 293 311 107 8 chr11 120679087 120679209 -28104263 + MIR3 SINE MIR 14 147 -61 594 310 59 25 chr11 120679232 120679471 -28104001 - MIR SINE MIR -4 258 12 822 229 93 29 chr11 120680634 120680913 -28102559 - MLT1J1 LTR MaLR -149 297 1 2885 157 35 5 chr11 120681302 120681876 -28101596 - L1MC3 LINE L1 0 7785 7195 375 253 0 0 chr11 120681947 120682038 -28101434 - MLT1F1 LTR MaLR -442 125 35 316 282 0 0 chr11 120682252 120682337 -28101135 - MIR SINE MIR -73 189 105 734 293 58 91 chr11 120682354 120682983 -28100489 + L2 LINE L2 2706 3312 -1 188 236 53 50 chr11 120682970 120683056 -28100416 - MIR SINE MIR -93 115 40 * 388 266 77 42 chr11 120683203 120683346 -28100126 + MIR SINE MIR 70 217 -45 400 179 0 0 chr11 120683446 120683513 -28099959 - AluJb SINE Alu -37 275 209 1534 180 14 74 chr11 120683911 120684115 -28099357 + MLT1B LTR MaLR 4 178 -212 2052 152 5 37 chr11 120684115 120684490 -28098982 - THE1B LTR MaLR -1 363 1 1534 180 14 74 chr11 120684490 120684652 -28098820 + MLT1B LTR MaLR 178 348 -42 226 228 0 35 chr11 120685106 120685163 -28098309 - MIR SINE MIR -131 77 23 26 30 0 0 chr11 120685601 120685634 -28097838 + AT_rich Low_complexity Low_complexity 1 33 0 806 141 0 16 chr11 120685669 120685790 -28097682 - FRAM SINE Alu -20 156 38 4720 186 29 14 chr11 120685820 120687717 -28095755 - L1MB2 LINE L1 -44 6127 4084 310 304 147 0 chr11 120687890 120687992 -28095480 - L2 LINE L2 -7 3265 3149 392 256 16 54 chr11 120688328 120688457 -28095015 - L3 LINE CR1 -137 1440 1317 219 36 0 0 chr11 120688646 120688674 -28094798 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2037 130 5 61 chr11 120688812 120689188 -28094284 + THE1A LTR MaLR 1 355 0 2156 78 0 11 chr11 120689642 120689924 -28093548 - AluY SINE Alu -11 300 22 403 347 27 14 chr11 120690036 120690183 -28093289 - MIR SINE MIR -90 172 24 199 379 48 24 chr11 120690280 120690404 -28093068 - L2 LINE L2 -221 3051 2925 1605 269 95 16 chr11 120690473 120691053 -28092419 + MLT1G LTR MaLR 1 590 0 604 341 78 18 chr11 120691067 120691501 -28091971 - L2 LINE L2 -1016 2298 1839 246 104 62 21 chr11 120691511 120691559 -28091913 + L2 LINE L2 3264 3313 0 1551 162 38 23 chr11 120692373 120692638 -28090834 - AluJo SINE Alu -39 273 5 1369 191 207 23 chr11 120693429 120693868 -28089604 + MLT2B1 LTR ERVL 1 520 0 207 0 0 0 chr11 120695437 120695460 -28088012 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 675 147 0 70 chr11 120695732 120695875 -28087597 + FRAM SINE Alu 1 40 0 466 220 0 0 chr11 120695997 120696088 -28087384 + FRAM SINE Alu 74 164 -12 609 142 23 17 chr11 120696769 120696945 -28086527 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 399 119 0 0 chr11 120696946 120697013 -28086459 + (TATG)n Simple_repeat Simple_repeat 2 68 0 246 170 0 57 chr11 120697338 120697391 -28086081 - MIR SINE MIR -103 159 110 358 259 84 23 chr11 120698703 120698834 -28084638 + L2 LINE L2 2925 3063 -209 534 305 95 36 chr11 120698940 120699382 -28084090 + LTR33 LTR ERVL 21 488 -33 850 213 130 23 chr11 120699702 120700018 -28083454 + MLT1C LTR MaLR 130 467 0 1007 119 62 0 chr11 120702590 120702750 -28080722 + L1PA10 LINE L1 5999 6168 0 379 325 57 0 chr11 120702751 120702874 -28080598 - L2 LINE L2 -6 3266 3137 703 276 92 9 chr11 120702913 120703141 -28080331 + MIR SINE MIR 9 255 -7 350 387 0 7 chr11 120703552 120703694 -28079778 + L2 LINE L2 3127 3267 -5 999 268 30 54 chr11 120704580 120704949 -28078523 - L2 LINE L2 0 3313 2954 1969 168 0 0 chr11 120706754 120707064 -28076408 - AluSx SINE Alu -2 310 1 532 308 16 22 chr11 120707065 120707247 -28076225 - MIR SINE MIR -70 192 12 266 326 12 0 chr11 120707860 120707946 -28075526 - MIR3 SINE MIR -18 190 104 330 339 8 8 chr11 120707950 120708071 -28075401 + MIR SINE MIR 20 140 -122 537 295 139 39 chr11 120708085 120708299 -28075173 + L2 LINE L2 2549 2740 -573 2173 121 52 22 chr11 120708299 120708663 -28074809 + THE1C LTR MaLR 1 375 0 537 295 139 39 chr11 120708663 120709070 -28074402 + L2 LINE L2 2740 3228 -85 1718 84 0 0 chr11 120710498 120710724 -28072748 - L1PA8 LINE L1 -6 6166 5941 2217 128 21 24 chr11 120711372 120711748 -28071724 + THE1C LTR MaLR 1 375 0 279 341 71 92 chr11 120711878 120712215 -28071257 + L2 LINE L2 2923 3252 -20 720 298 107 0 chr11 120712225 120712430 -28071042 + MIR SINE MIR 2 228 -34 318 291 154 0 chr11 120713731 120713848 -28069624 - MIR SINE MIR -96 166 32 1237 270 97 45 chr11 120714831 120715337 -28068135 - L1ME3A LINE L1 -223 5947 5469 3425 78 4 0 chr11 120715337 120715797 -28067675 - L1PA12 LINE L1 0 6168 5707 1237 270 97 45 chr11 120715797 120715938 -28067534 - L1ME3A LINE L1 -701 5469 5337 2318 73 0 7 chr11 120715938 120716251 -28067221 - AluY SINE Alu 0 311 1 1237 270 97 45 chr11 120716251 120716774 -28066698 - L1ME3A LINE L1 -833 5337 4706 992 248 25 0 chr11 120716936 120717178 -28066294 - MLT1I LTR MaLR 0 409 162 1421 248 52 66 chr11 120717311 120718100 -28065372 - L1ME3A LINE L1 -1717 4429 3652 1510 59 0 5 chr11 120718765 120718776 -28064696 + L1P3 LINE L1 5441 5451 -703 3688 78 6 0 chr11 120718776 120719266 -28064206 - L1PA7 LINE L1 -2 6152 5660 1510 59 0 5 chr11 120719266 120719457 -28064015 + L1PA7 LINE L1 5451 5642 -512 16097 108 15 8 chr11 120719539 120722144 -28061328 - L1P LINE L1 -2795 3351 729 499 279 148 22 chr11 120722263 120722492 -28060980 - MIR SINE MIR -3 259 2 25 0 0 0 chr11 120722921 120722946 -28060526 + AT_rich Low_complexity Low_complexity 1 25 0 189 94 0 0 chr11 120723504 120723536 -28059936 + (TG)n Simple_repeat Simple_repeat 1 32 0 659 144 0 0 chr11 120724146 120724243 -28059229 + AluSg/x SINE Alu 196 292 -20 215 294 0 0 chr11 120724419 120724470 -28059002 + MIR SINE MIR 162 212 -50 2358 110 0 0 chr11 120724942 120725252 -28058220 + AluSg SINE Alu 1 310 0 801 260 32 41 chr11 120726261 120726507 -28056965 - MIR SINE MIR -17 245 2 668 119 9 0 chr11 120727014 120727123 -28056349 + (GGAA)n Simple_repeat Simple_repeat 3 112 0 212 299 186 30 chr11 120727130 120727297 -28056175 - L3b LINE CR1 -74 1509 1317 22 111 0 0 chr11 120728216 120728315 -28055157 + AT_rich Low_complexity Low_complexity 1 99 0 313 350 22 15 chr11 120728664 120728801 -28054671 - MIR SINE MIR -120 142 5 624 211 19 6 chr11 120728868 120729024 -28054448 - MER103 DNA DNA -1 165 8 479 253 34 0 chr11 120731782 120731928 -28051544 + MER103 DNA DNA 13 163 -3 973 26 0 0 chr11 120732358 120732474 -28050998 + L1PA5 LINE L1 6038 6153 -1 273 319 148 23 chr11 120733877 120734093 -28049379 - MIR SINE MIR -6 256 14 332 273 134 12 chr11 120734214 120734467 -28049005 - L1MC5 LINE L1 -54 7907 7624 760 261 57 24 chr11 120734474 120734803 -28048669 - LTR33 LTR ERVL -7 514 90 846 231 75 0 chr11 120734803 120735002 -28048470 - MER58C DNA MER1_type 0 215 2 760 261 57 24 chr11 120735002 120735091 -28048381 - LTR33 LTR ERVL -431 90 5 299 270 181 22 chr11 120735115 120735341 -28048131 - L1MC5 LINE L1 -389 7572 7311 * 382 228 71 14 chr11 120735325 120735774 -28047698 - L1MC4 LINE L1 -547 7495 6963 210 208 0 0 chr11 120735809 120735862 -28047610 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 318 291 11 1 chr11 120735884 120735985 -28047487 - L1MD3 LINE L1 -859 6993 6849 900 221 101 49 chr11 120736028 120736394 -28047078 - MLT1D LTR MaLR -120 385 1 595 278 16 0 chr11 120737123 120737314 -28046158 - L1MC5 LINE L1 -1124 6837 6644 1804 162 125 13 chr11 120739445 120739822 -28043650 + LTR32 LTR ERVL 53 471 0 254 346 20 0 chr11 120739912 120740013 -28043459 - MIR SINE MIR -8 254 152 248 202 36 48 chr11 120740404 120740488 -28042984 - LTR67 LTR ERVL -385 172 90 516 348 110 28 chr11 120741088 120741479 -28041993 - L2 LINE L2 -2 3270 2848 25 0 0 0 chr11 120741916 120741941 -28041531 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr11 120741987 120742017 -28041455 + AT_rich Low_complexity Low_complexity 1 30 0 1491 93 5 5 chr11 120742093 120742298 -28041174 - AluSg/x SINE Alu -7 303 99 783 317 123 12 chr11 120742855 120743370 -28040102 - L2 LINE L2 0 3313 2737 182 150 25 0 chr11 120743377 120743417 -28040055 + (TCTA)n Simple_repeat Simple_repeat 3 43 0 243 264 0 0 chr11 120743540 120743593 -28039879 - L2 LINE L2 -567 2747 2695 430 316 8 8 chr11 120743803 120743936 -28039536 + L2 LINE L2 3140 3272 0 663 333 110 10 chr11 120744124 120744415 -28039057 + L3 LINE CR1 1143 1462 -115 542 305 65 10 chr11 120744421 120744621 -28038851 - MIR SINE MIR -37 225 15 1795 115 12 0 chr11 120745573 120745825 -28037647 + AluSx SINE Alu 58 312 0 296 331 87 0 chr11 120746112 120746239 -28037233 - L2 LINE L2 0 3313 3176 * 733 269 29 41 chr11 120746234 120746476 -28036996 - MIR SINE MIR 0 262 24 197 377 78 0 chr11 120746538 120746615 -28036857 - MIR SINE MIR -174 88 6 497 146 0 10 chr11 120746794 120746890 -28036582 + (TCCC)n Simple_repeat Simple_repeat 1 95 0 370 256 82 62 chr11 120749857 120750052 -28033420 + MLT1K LTR MaLR 367 565 -23 269 358 84 18 chr11 120750072 120750298 -28033174 + L2 LINE L2 2620 2860 -454 510 281 65 88 chr11 120750401 120751027 -28032445 - L1MEd LINE L1 -5386 733 122 615 249 32 111 chr11 120751219 120751560 -28031912 - L2 LINE L2 0 3313 3000 683 268 164 46 chr11 120752139 120752486 -28030986 - L3 LINE CR1 -222 1355 968 714 353 63 3 chr11 120752609 120752960 -28030512 - L3 LINE CR1 -1015 562 191 336 328 46 40 chr11 120753009 120753133 -28030339 + MIR3 SINE MIR 10 137 -71 1930 161 0 10 chr11 120753133 120753443 -28030029 + AluSx SINE Alu 1 307 -5 336 328 46 40 chr11 120753443 120753492 -28029980 + MIR3 SINE MIR 137 184 -24 517 226 7 0 chr11 120753650 120753787 -28029685 - L1MB7 LINE L1 0 6184 6047 4536 48 9 2 chr11 120754084 120754648 -28028824 + L1PA5 LINE L1 5587 6154 0 266 312 102 32 chr11 120754743 120754929 -28028543 - L2 LINE L2 -12 3301 3103 549 269 38 61 chr11 120754964 120755176 -28028296 - MIR SINE MIR -50 212 6 237 309 146 0 chr11 120755199 120755322 -28028150 + L1ME LINE L1 5773 5913 -208 303 93 0 0 chr11 120755549 120755592 -28027880 + (CA)n Simple_repeat Simple_repeat 2 44 0 375 263 26 37 chr11 120755929 120756119 -28027353 - LTR33 LTR ERVL 0 521 334 547 298 11 5 chr11 120756172 120756360 -28027112 - LTR33 LTR ERVL -309 212 24 358 164 0 0 chr11 120756397 120756458 -28027014 - Alu SINE Alu -3 297 237 1620 167 57 3 chr11 120756472 120756641 -28026831 - AluSx SINE Alu -15 297 106 477 0 0 0 chr11 120756641 120756694 -28026778 + (GA)n Simple_repeat Simple_repeat 2 54 0 1620 167 57 3 chr11 120756694 120756806 -28026666 - AluSx SINE Alu -206 106 1 361 216 86 14 chr11 120757007 120757114 -28026358 + MIR SINE MIR 15 137 -71 655 267 53 97 chr11 120757361 120757814 -28025658 - L2 LINE L2 -49 3264 2832 441 294 96 7 chr11 120758473 120758619 -28024853 + MIR SINE MIR 50 208 -54 225 0 0 0 chr11 120759383 120759408 -28024064 + (A)n Simple_repeat Simple_repeat 1 25 0 270 277 170 38 chr11 120759454 120759613 -28023859 + MIR3 SINE MIR 6 185 -23 293 239 11 87 chr11 120759755 120759847 -28023625 + MIR SINE MIR 104 188 -74 2701 184 32 52 chr11 120760223 120760937 -28022535 + L1 LINE L1 4535 5234 -912 262 234 0 137 chr11 120761184 120761261 -28022211 + ERVL LTR ERVL 1339 1394 -4370 2176 71 30 20 chr11 120761261 120761556 -28021916 - AluY SINE Alu -13 298 1 262 234 0 137 chr11 120761556 120761602 -28021870 + ERVL LTR ERVL 1394 1445 -4319 487 296 140 30 chr11 120762141 120762405 -28021067 + MLT1J2 LTR MaLR 97 389 -61 227 206 137 0 chr11 120762428 120762501 -28020971 + MLT1J1 LTR MaLR 364 446 0 212 365 170 0 chr11 120762507 120762666 -28020806 - L2 LINE L2 -2417 897 712 207 47 23 47 chr11 120762673 120762716 -28020756 + (CATATA)n Simple_repeat Simple_repeat 1 42 0 180 20 78 39 chr11 120762719 120762770 -28020702 + (TATATG)n Simple_repeat Simple_repeat 1 53 0 1008 95 38 15 chr11 120762809 120763159 -28020313 + (TATATG)n Simple_repeat Simple_repeat 1 535 0 238 311 0 0 chr11 120763160 120763250 -28020222 - L1MC4 LINE L1 -1339 6703 6614 256 153 27 53 chr11 120763252 120763402 -28020070 + (TATATG)n Simple_repeat Simple_repeat 4 149 0 533 326 103 13 chr11 120763491 120763715 -28019757 - MIR SINE MIR -6 256 13 21 89 0 0 chr11 120764543 120764599 -28018873 + AT_rich Low_complexity Low_complexity 1 56 0 463 289 113 4 chr11 120764604 120764843 -28018629 + L1ME3A LINE L1 5622 5886 -284 390 42 0 0 chr11 120764850 120764898 -28018574 + (TA)n Simple_repeat Simple_repeat 1 48 0 238 319 176 8 chr11 120766893 120767012 -28016460 + L2 LINE L2 3101 3239 -33 255 291 0 13 chr11 120767421 120767500 -28015972 + L3 LINE CR1 1495 1572 -5 390 330 131 50 chr11 120768163 120768262 -28015210 + L2 LINE L2 1397 1487 -1827 1940 139 26 42 chr11 120768262 120768643 -28014829 - THE1C LTR MaLR 0 375 1 390 330 131 50 chr11 120768643 120769270 -28014202 + L2 LINE L2 1487 2182 -1132 384 264 83 16 chr11 120769271 120769392 -28014080 - MER5B DNA MER1_type 0 178 50 296 132 105 0 chr11 120769445 120769521 -28013951 - L1MA8 LINE L1 -3 6288 6205 321 217 0 0 chr11 120769523 120769583 -28013889 - MER5B DNA MER1_type -116 62 3 * 395 325 0 6 chr11 120769583 120769742 -28013730 + L2 LINE L2 2175 2332 -982 356 300 46 51 chr11 120769738 120769975 -28013497 + L2 LINE L2 2826 3061 -211 * 283 252 104 7 chr11 120770108 120770243 -28013229 - MER104 DNA Tc2 0 180 33 411 73 0 0 chr11 120770573 120770628 -28012844 + (TG)n Simple_repeat Simple_repeat 2 56 0 5910 127 29 37 chr11 120770635 120771806 -28011666 - L1MC1 LINE L1 0 6333 5174 344 214 0 34 chr11 120773350 120773439 -28010033 - MLT1I LTR MaLR -2 407 322 219 346 0 0 chr11 120773694 120773772 -28009700 - MIR SINE MIR -68 140 63 302 311 176 9 chr11 120774133 120774355 -28009117 - MIR SINE MIR -2 260 2 1997 189 46 30 chr11 120774582 120775017 -28008455 - MLT1C LTR MaLR -25 442 1 361 345 34 23 chr11 120776003 120776180 -28007292 + MIR3 SINE MIR 30 208 0 251 271 0 0 chr11 120777073 120777132 -28006340 + MIR SINE MIR 57 115 -147 27 0 0 0 chr11 120779342 120779369 -28004103 + AT_rich Low_complexity Low_complexity 1 27 0 222 330 58 68 chr11 120779635 120779738 -28003734 + L2 LINE L2 3143 3244 -28 405 0 0 0 chr11 120782330 120782375 -28001097 + (TG)n Simple_repeat Simple_repeat 2 46 0 216 337 93 0 chr11 120783233 120783319 -28000153 - MIR SINE MIR -108 154 61 221 175 0 0 chr11 120783341 120783381 -28000091 + T-rich Low_complexity Low_complexity 1 40 0 578 279 14 141 chr11 120783484 120783904 -27999568 - L2 LINE L2 -25 3247 2881 812 238 76 14 chr11 120784825 120785061 -27998411 - MIR SINE MIR -12 250 3 1564 103 123 4 chr11 120785360 120785613 -27997859 - L1MA4 LINE L1 -4 6296 6014 485 308 70 49 chr11 120786468 120787095 -27996377 - L1M4 LINE L1 -1219 4927 4288 3794 205 26 9 chr11 120787169 120787949 -27995523 + L1PB4 LINE L1 5361 6153 -3 2933 138 29 61 chr11 120787955 120788149 -27995323 + L1MA9 LINE L1 5771 5970 -342 2434 78 0 3 chr11 120788149 120788443 -27995029 + AluSc SINE Alu 1 293 -16 2933 138 29 61 chr11 120788443 120788557 -27994915 + L1MA9 LINE L1 5970 6086 -226 1845 145 0 24 chr11 120788557 120788873 -27994599 + AluSx SINE Alu 1 309 0 2933 138 29 61 chr11 120788873 120789122 -27994350 + L1MA9 LINE L1 6086 6312 0 182 131 16 49 chr11 120790471 120790532 -27992940 + GA-rich Low_complexity Low_complexity 1 59 0 435 306 49 27 chr11 120790693 120790876 -27992596 + MIR SINE MIR 49 235 -27 294 257 67 29 chr11 120792065 120792170 -27991302 + MER89 LTR ERV1 422 530 -29 418 281 101 0 chr11 120794462 120794601 -27988871 + L1ME4a LINE L1 5485 5637 -484 895 285 70 25 chr11 120794657 120795127 -27988345 + L1ME4a LINE L1 5392 5882 -239 278 250 100 0 chr11 120795194 120795274 -27988198 - L2 LINE L2 0 3313 3226 811 273 24 32 chr11 120795533 120795782 -27987690 + MIR SINE MIR 11 257 -5 423 269 119 24 chr11 120795787 120796040 -27987432 + L1ME4a LINE L1 5687 5963 -158 189 302 0 0 chr11 120796434 120796477 -27986995 - L3 LINE CR1 -10 1567 1525 338 287 280 0 chr11 120796479 120796622 -27986850 + MER5A DNA MER1_type 4 186 -3 344 336 0 25 chr11 120796650 120796769 -27986703 - MIR SINE MIR -73 135 20 2412 64 0 13 chr11 120797979 120798277 -27985195 + AluY SINE Alu 2 295 -16 3557 75 9 7 chr11 120798385 120798828 -27984644 + MLT2A1 LTR ERVL 1 444 0 320 341 48 0 chr11 120798988 120799196 -27984276 - L1MC4a LINE L1 -1878 5930 5713 291 130 0 0 chr11 120799772 120799826 -27983646 + (GA)n Simple_repeat Simple_repeat 1 54 0 437 211 283 22 chr11 120800375 120800555 -27982917 + MIR SINE MIR 20 246 -16 2052 91 8 0 chr11 120801212 120801477 -27981995 + AluSx SINE Alu 17 283 -29 465 50 0 0 chr11 120801477 120801537 -27981935 + (TA)n Simple_repeat Simple_repeat 2 61 0 251 264 136 57 chr11 120801794 120801934 -27981538 - L2 LINE L2 0 3272 3122 569 50 25 0 chr11 120802081 120802161 -27981311 + (TAGA)n Simple_repeat Simple_repeat 1 82 0 180 0 0 0 chr11 120802225 120802245 -27981227 + (CA)n Simple_repeat Simple_repeat 2 21 0 333 100 0 0 chr11 120802703 120802753 -27980719 + (CA)n Simple_repeat Simple_repeat 1 50 0 969 94 0 0 chr11 120803210 120803348 -27980124 + (CATAG)n Simple_repeat Simple_repeat 4 141 0 445 268 92 28 chr11 120803368 120803510 -27979962 + MIR SINE MIR 40 190 -72 977 227 40 60 chr11 120803617 120803993 -27979479 + LTR16A LTR ERVL 18 436 -14 1605 272 111 84 chr11 120803999 120805041 -27978431 - L1MC4 LINE L1 -17 8025 6942 435 38 0 0 chr11 120805041 120805094 -27978378 + (TG)n Simple_repeat Simple_repeat 2 54 0 1605 272 111 84 chr11 120805094 120805292 -27978180 - L1MC4 LINE L1 -1100 6942 6751 1704 134 0 37 chr11 120806186 120806454 -27977018 + AluJb SINE Alu 33 290 -22 538 273 37 64 chr11 120806598 120806785 -27976687 + MIR3 SINE MIR 17 198 -10 2716 186 18 35 chr11 120806950 120807498 -27975974 - MER90 LTR ERV1 0 614 76 254 320 76 31 chr11 120808077 120808240 -27975232 - MIR SINE MIR -69 139 19 203 343 15 0 chr11 120808301 120808368 -27975104 - MIR SINE MIR -161 101 34 250 257 0 0 chr11 120810648 120810718 -27972754 + MER4-int LTR ERV1 1093 1162 -5436 477 272 0 0 chr11 120812386 120812500 -27970972 - MER103 DNA DNA -45 121 8 2091 139 30 0 chr11 120813141 120813444 -27970028 - AluSx SINE Alu 0 312 1 321 157 48 36 chr11 120813685 120813768 -27969704 - MIR SINE MIR -10 252 169 1473 203 25 15 chr11 120813825 120814023 -27969449 - L1MD2 LINE L1 -5 6354 6150 2959 137 5 16 chr11 120814023 120814462 -27969010 - Tigger2a DNA MER2_type 0 434 1 1473 203 25 15 chr11 120814462 120814589 -27968883 - L1MD2 LINE L1 -209 6150 6026 199 309 36 0 chr11 120815168 120815252 -27968220 - MIR SINE MIR 0 262 176 189 107 0 0 chr11 120815763 120815791 -27967681 + (TAA)n Simple_repeat Simple_repeat 2 29 0 484 316 0 0 chr11 120816012 120816145 -27967327 + MER94 DNA DNA 1 133 -1 337 295 19 19 chr11 120816146 120816251 -27967221 - MIR SINE MIR -127 135 31 199 114 45 0 chr11 120816583 120816627 -27966845 + (TTCA)n Simple_repeat Simple_repeat 4 49 0 3290 96 11 45 chr11 120816717 120817186 -27966286 - MLT2A2 LTR ERVL 0 453 1 653 290 93 84 chr11 120817267 120817622 -27965850 + L2 LINE L2 2914 3271 -1 204 261 22 0 chr11 120817798 120817844 -27965628 + L2 LINE L2 3224 3270 -2 * 494 285 47 14 chr11 120817841 120818014 -27965458 - MIR SINE MIR -58 150 11 431 264 174 18 chr11 120818827 120818994 -27964478 - MIR SINE MIR -12 250 58 350 246 101 85 chr11 120819000 120819248 -27964224 + L2 LINE L2 3060 3311 -2 196 256 186 23 chr11 120819331 120819460 -27964012 + MIR SINE MIR 101 250 -12 370 354 47 5 chr11 120820880 120821072 -27962400 + L2 LINE L2 2079 2278 -1036 2485 107 48 25 chr11 120821114 120821470 -27962002 - THE1B LTR MaLR 0 364 1 345 100 0 0 chr11 120821540 120821590 -27961882 + (TTCC)n Simple_repeat Simple_repeat 4 53 0 424 352 53 13 chr11 120821953 120822180 -27961292 - MIR SINE MIR 0 262 27 359 351 15 70 chr11 120822186 120822432 -27961040 - L2 LINE L2 -457 2857 2626 2110 139 0 0 chr11 120822432 120822735 -27960737 + AluSx SINE Alu 1 303 -9 359 351 15 70 chr11 120822735 120822759 -27960713 - L2 LINE L2 -688 2626 2602 402 250 70 16 chr11 120822899 120823027 -27960445 - L2 LINE L2 -4 3309 3175 183 300 0 33 chr11 120823297 120823357 -27960115 - L2 LINE L2 -2 3311 3254 212 306 0 14 chr11 120823977 120824049 -27959423 + L2 LINE L2 3201 3271 -1 315 307 54 48 chr11 120826206 120826372 -27957100 - L1M2a LINE L1 -6984 184 18 22 56 0 0 chr11 120826767 120826803 -27956669 + AT_rich Low_complexity Low_complexity 1 36 0 328 323 48 48 chr11 120827005 120827191 -27956281 - L2 LINE L2 -605 2709 2524 2729 124 61 19 chr11 120827207 120827618 -27955854 - MSTA LTR MaLR 0 428 1 191 279 63 54 chr11 120827738 120827849 -27955623 - L2 LINE L2 -838 2476 2365 5376 159 15 17 chr11 120878271 120878730 -27904742 + L1MA6 LINE L1 4245 4704 -1596 1644 61 0 14 chr11 120878730 120878944 -27904528 - AluY SINE Alu -43 268 58 5376 159 15 17 chr11 120878944 120880122 -27903350 + L1MA6 LINE L1 4704 5875 -425 787 173 14 56 chr11 120880224 120880438 -27903034 + L1MA6 LINE L1 6096 6300 0 525 266 56 42 chr11 120880730 120881087 -27902385 + L1M4 LINE L1 2131 2492 -3654 304 168 59 59 chr11 120882173 120882274 -27901198 - LTR67 LTR ERVL 0 557 457 2292 113 6 0 chr11 120882687 120882998 -27900474 + AluSq SINE Alu 1 313 0 508 158 0 0 chr11 120885835 120885917 -27897555 + AluJ/FLAM SINE Alu 3 84 -228 434 374 57 9 chr11 120886245 120886456 -27897016 - MIR SINE MIR -16 246 26 195 174 14 43 chr11 120887027 120887096 -27896376 + GA-rich Low_complexity Low_complexity 3 69 0 209 295 0 51 chr11 120887105 120887183 -27896289 + MIR3 SINE MIR 103 176 -32 777 324 120 29 chr11 120888728 120889352 -27894120 + L2 LINE L2 2212 2892 -422 1633 152 119 0 chr11 120889558 120889835 -27893637 - AluSx SINE Alu -2 310 1 359 237 158 14 chr11 120889974 120890113 -27893359 + L2 LINE L2 3148 3306 -7 1805 178 0 0 chr11 120890147 120890423 -27893049 + AluJo SINE Alu 1 276 -36 405 58 0 0 chr11 120890433 120890485 -27892987 + (TAA)n Simple_repeat Simple_repeat 3 54 0 223 358 48 35 chr11 120891064 120891293 -27892179 + L2 LINE L2 2682 2913 -401 2110 122 0 7 chr11 120892764 120893058 -27890414 + AluSc SINE Alu 5 296 -13 274 281 140 55 chr11 120893827 120894136 -27889336 + L2 LINE L2 2701 3051 -221 446 317 58 24 chr11 120894193 120894398 -27889074 + MIR SINE MIR 18 229 -33 2804 190 72 16 chr11 120894878 120895112 -27888360 - Charlie1 DNA MER1_type 0 2761 2542 234 0 0 0 chr11 120895112 120895138 -27888334 + (TG)n Simple_repeat Simple_repeat 1 26 0 2804 190 72 16 chr11 120895138 120896032 -27887440 - Charlie1 DNA MER1_type -219 2542 1511 197 241 139 13 chr11 120897138 120897217 -27886255 + MIR SINE MIR 35 123 -139 306 0 0 0 chr11 120897551 120897585 -27885887 + (CA)n Simple_repeat Simple_repeat 2 35 0 345 288 129 18 chr11 120897695 120897858 -27885614 + MIR SINE MIR 47 227 -35 473 221 63 0 chr11 120897889 120898016 -27885456 + L1MD1 LINE L1 2 136 -6404 * 3717 217 49 26 chr11 120898006 120899117 -27884355 + L1MD1 LINE L1 426 1870 -4670 1332 181 83 33 chr11 120899111 120899608 -27883864 + L1MD1 LINE L1 5336 5849 -743 * 324 0 0 0 chr11 120899678 120899714 -27883758 + (TA)n Simple_repeat Simple_repeat 2 37 0 189 0 0 0 chr11 120899728 120899749 -27883723 + (TG)n Simple_repeat Simple_repeat 2 22 0 281 81 16 48 chr11 120899757 120899819 -27883653 - LTR66 LTR ERVL -171 439 380 2733 175 15 8 chr11 120899820 120900345 -27883127 + L1MD1 LINE L1 5902 6430 -206 673 204 74 0 chr11 120900658 120900834 -27882638 + L1ME4a LINE L1 5209 5397 -749 244 269 64 0 chr11 120901038 120901116 -27882356 + MIR SINE MIR 72 154 -108 1788 186 13 5 chr11 120901253 120901625 -27881847 - L1MD3 LINE L1 -5 7990 7616 421 231 61 7 chr11 120901729 120901876 -27881596 - L1MA9 LINE L1 -119 6193 6039 2263 132 0 0 chr11 120901913 120902224 -27881248 - AluSx SINE Alu -1 311 1 1227 273 18 3 chr11 120902976 120903306 -27880166 + MER102b DNA MER1_type 2 336 -5 1214 296 34 0 chr11 120903414 120903793 -27879679 - LTR16C LTR ERVL -1 490 99 198 0 0 0 chr11 120904828 120904850 -27878622 + (T)n Simple_repeat Simple_repeat 1 22 0 650 218 0 76 chr11 120905197 120905394 -27878078 - Tigger2a DNA MER2_type 0 434 253 407 131 60 12 chr11 120905421 120905505 -27877967 - Tigger2a DNA MER2_type -345 89 2 190 238 95 24 chr11 120905581 120905665 -27877807 - MER5A DNA MER1_type -18 171 82 323 267 50 46 chr11 120906220 120906387 -27877085 - MIR SINE MIR -67 141 10 182 283 19 19 chr11 120906667 120906720 -27876752 - L2 LINE L2 -5 3267 3215 432 0 0 0 chr11 120906993 120907041 -27876431 + (TG)n Simple_repeat Simple_repeat 1 48 0 248 265 29 15 chr11 120907756 120907824 -27875648 + MIR SINE MIR 44 112 -96 * 2439 279 154 16 chr11 120907820 120908779 -27874693 + L2 LINE L2 835 1926 -1388 256 305 62 23 chr11 120908814 120908942 -27874530 + MIR SINE MIR 106 238 -24 844 264 42 37 chr11 120909469 120909874 -27873598 + L1ME4a LINE L1 5525 5931 -190 333 250 65 0 chr11 120909920 120910012 -27873460 + L1ME4a LINE L1 6017 6114 -7 213 298 164 18 chr11 120910180 120910351 -27873121 - L2 LINE L2 -2 3311 3116 519 233 39 23 chr11 120910574 120910703 -27872769 + MIR3 SINE MIR 36 166 -42 319 339 199 13 chr11 120911057 120911611 -27871861 - L2 LINE L2 -624 2690 2034 300 297 50 0 chr11 120912842 120912943 -27870529 + L2 LINE L2 2926 3031 -282 234 125 0 0 chr11 120913983 120914015 -27869457 + L2 LINE L2 3265 3296 -17 1964 130 11 14 chr11 120914026 120914343 -27869129 + AluSx SINE Alu 1 316 0 418 319 111 10 chr11 120914807 120915014 -27868458 + MIR SINE MIR 15 242 -20 234 91 0 0 chr11 120915190 120915223 -27868249 + (TG)n Simple_repeat Simple_repeat 1 33 0 596 326 30 8 chr11 120915625 120915869 -27867603 - MIR SINE MIR 0 262 17 210 37 0 0 chr11 120916042 120916069 -27867403 + (CA)n Simple_repeat Simple_repeat 1 27 0 253 261 0 78 chr11 120917213 120917366 -27866106 + HAL1b LINE L1 217 357 -991 236 282 24 0 chr11 120917475 120917560 -27865912 + HAL1b LINE L1 526 612 -736 257 298 58 37 chr11 120917653 120918082 -27865390 + L1MC4a LINE L1 4403 4840 -1306 405 277 105 35 chr11 120918488 120918773 -27864699 + L1MC4a LINE L1 5298 5602 -2206 286 288 58 0 chr11 120918790 120918969 -27864503 + L1MC4a LINE L1 5703 5819 -302 210 128 0 0 chr11 120919927 120919966 -27863506 + (A)n Simple_repeat Simple_repeat 1 39 0 1053 221 63 0 chr11 120920411 120920633 -27862839 + MIR SINE MIR 6 241 -21 2157 124 3 13 chr11 120920676 120920983 -27862489 - AluSx SINE Alu -8 304 1 234 321 9 9 chr11 120921083 120921189 -27862283 + MER103 DNA DNA 7 112 -54 334 338 31 19 chr11 120921824 120922014 -27861458 - MIR SINE MIR -50 212 20 365 319 42 0 chr11 120922687 120922806 -27860666 + MIR SINE MIR 5 128 -134 328 265 69 0 chr11 120923920 120924022 -27859450 - MIR SINE MIR -13 249 141 408 280 96 59 chr11 120924531 120924885 -27858587 - MARNA DNA Mariner -42 544 178 2147 110 13 3 chr11 120925127 120925426 -27858046 + AluSx SINE Alu 1 302 -10 305 295 15 99 chr11 120925738 120925943 -27857529 - MIR SINE MIR -41 221 36 240 163 0 0 chr11 120926622 120926665 -27856807 + GA-rich Low_complexity Low_complexity 1 43 0 194 289 0 0 chr11 120927207 120927259 -27856213 - L2 LINE L2 -3 3310 3259 1634 203 88 36 chr11 120927530 120927973 -27855499 + MER31B LTR ERV1 1 466 0 382 241 62 45 chr11 120928009 120928121 -27855351 - MER91B DNA MER1_type 0 190 77 239 305 37 0 chr11 120928131 120928213 -27855259 - MER91B DNA MER1_type -62 128 44 370 250 134 61 chr11 120928363 120928527 -27854945 - L2 LINE L2 0 3313 3138 8216 212 37 22 chr11 120928533 120930554 -27852918 + L1PB3 LINE L1 106 2271 -3932 2171 17 0 0 chr11 120930554 120930789 -27852683 + AluYb8 SINE Alu 71 305 -13 8216 212 37 22 chr11 120930789 120932621 -27850851 + L1PB3 LINE L1 2271 4074 -2129 4555 108 12 16 chr11 120932596 120933242 -27850230 + L1PA13 LINE L1 5528 6172 -61 * 2322 145 21 16 chr11 120933242 120933615 -27849857 + THE1C LTR MaLR 1 375 0 4555 108 12 16 chr11 120933615 120933677 -27849795 + L1PA13 LINE L1 6172 6233 0 6512 169 10 13 chr11 120933680 120935833 -27847639 + L1PB3 LINE L1 4061 6210 -1 658 291 135 25 chr11 120935851 120936295 -27847177 - L2 LINE L2 -188 3125 2627 1422 198 5 44 chr11 120936343 120936867 -27846605 + L1MB1 LINE L1 4720 6167 -1 276 217 29 72 chr11 120937415 120937484 -27845988 + L2 LINE L2 3134 3199 -73 403 193 11 0 chr11 120937630 120937718 -27845754 + L1ME3A LINE L1 6037 6125 -45 2860 101 5 13 chr11 120938011 120938389 -27845083 - THE1C LTR MaLR 0 375 1 1904 189 55 6 chr11 120938432 120938797 -27844675 + MSTA LTR MaLR 1 383 -45 1288 214 4 4 chr11 120938813 120939084 -27844388 - L1 LINE L1 -1117 5029 4759 1246 299 40 14 chr11 120939084 120939608 -27843864 - ERVL LTR ERVL -919 4608 4017 291 303 77 40 chr11 120939657 120939929 -27843543 - ERVL LTR ERVL -1332 3860 3429 372 104 0 0 chr11 120940028 120940076 -27843396 - MSTB LTR MaLR 0 426 379 709 324 71 54 chr11 120940102 120940774 -27842698 + ERVL LTR ERVL 4615 5298 -466 418 317 89 40 chr11 120941138 120941441 -27842031 + LTR16C LTR ERVL 156 473 -18 237 320 40 10 chr11 120941731 120941831 -27841641 + MLT1K LTR MaLR 5 107 -481 712 67 0 0 chr11 120941983 120942072 -27841400 - 5S rRNA rRNA -32 89 1 470 280 105 25 chr11 120942078 120942278 -27841194 + MLT1K LTR MaLR 370 585 -3 228 138 86 17 chr11 120942420 120942478 -27840994 - L1MC4 LINE L1 -1336 6706 6645 212 323 15 0 chr11 120942734 120942799 -27840673 + L2 LINE L2 3207 3272 0 292 74 0 37 chr11 120942836 120942890 -27840582 + (TA)n Simple_repeat Simple_repeat 2 53 0 3826 155 55 28 chr11 120942915 120943658 -27839814 + L1MA7 LINE L1 5529 6291 0 365 252 156 7 chr11 120943987 120944122 -27839350 - MIR3 SINE MIR -21 187 33 2043 122 7 20 chr11 120944704 120945008 -27838464 + AluSc SINE Alu 1 300 -9 265 308 47 28 chr11 120945083 120945190 -27838282 - L2 LINE L2 -5 3267 3159 1771 156 3 52 chr11 120945321 120945647 -27837825 - AluSx SINE Alu -2 310 1 1702 162 82 3 chr11 120946059 120946374 -27837098 - L1PB4 LINE L1 0 6156 5817 213 115 39 19 chr11 120946414 120946466 -27837006 + (TA)n Simple_repeat Simple_repeat 2 54 0 253 236 71 71 chr11 120947586 120947713 -27835759 + MIR SINE MIR 71 197 -65 2602 166 22 2 chr11 120947867 120948284 -27835188 - MSTB LTR MaLR 0 426 2 2486 63 7 0 chr11 120949295 120949594 -27833878 - AluY SINE Alu -10 301 1 1352 120 0 29 chr11 120950232 120950440 -27833032 - AluSg/x SINE Alu -1 309 108 825 158 0 10 chr11 120950595 120950746 -27832726 - L1PB4 LINE L1 -363 5791 5651 278 266 78 0 chr11 120952330 120952394 -27831078 - Tigger3(Golem) DNA MER2_type -2960 69 1 2815 141 73 0 chr11 120952433 120953003 -27830469 + L1M4 LINE L1 5170 5775 -403 1159 135 0 0 chr11 120953008 120953178 -27830294 - AluSg/x SINE Alu -9 301 132 7974 26 1 8 chr11 120953185 120954092 -27829380 + L1PA4 LINE L1 5255 6155 0 9784 108 4 30 chr11 120954094 120955606 -27827866 + HERVH LTR ERV1 1520 2992 -4721 6116 91 1 5 chr11 120955592 120956449 -27827023 + HERVH LTR ERV1 3140 3993 -3720 * 4453 139 1 1 chr11 120956451 120957113 -27826359 + HERVH LTR ERV1 4488 5149 -2564 1374 148 19 0 chr11 120957114 120957330 -27826142 + HERVH LTR ERV1 5600 5819 -1894 * 2236 116 50 16 chr11 120957328 120957707 -27825765 + HERVH LTR ERV1 7322 7713 0 2922 85 92 5 chr11 120957708 120958119 -27825353 + LTR7 LTR ERV1 2 448 -2 2381 220 26 5 chr11 120958128 120958732 -27824740 - L1M4 LINE L1 -3180 2966 2350 22 0 0 0 chr11 120958758 120958780 -27824692 + AT_rich Low_complexity Low_complexity 1 22 0 4441 142 17 20 chr11 120958983 120959457 -27824015 + MER50 LTR ERV1 1 474 -260 2232 88 18 0 chr11 120959457 120959740 -27823732 + AluSc SINE Alu 1 288 -21 4441 142 17 20 chr11 120959740 120959977 -27823495 + MER50 LTR ERV1 474 710 -24 486 295 61 34 chr11 120959986 120960393 -27823079 + L1M4 LINE L1 2401 2818 -3328 1609 166 25 32 chr11 120961011 120961337 -27822135 + AluJo SINE Alu 1 324 0 331 311 53 37 chr11 120962103 120962293 -27821179 - MIR SINE MIR -50 212 20 6555 157 23 21 chr11 120963198 120964581 -27818891 + L1MC1 LINE L1 4944 6333 0 200 105 26 53 chr11 120964771 120964809 -27818663 + MIR SINE MIR 111 147 -61 798 246 106 21 chr11 120964965 120965201 -27818271 + MIR SINE MIR 7 262 0 456 267 103 47 chr11 120965362 120965599 -27817873 - MIR SINE MIR -18 244 6 419 283 69 0 chr11 120967367 120967512 -27815960 + MIR SINE MIR 59 213 -49 479 276 17 0 chr11 120967979 120968095 -27815377 + Charlie8 DNA MER1_type 35 152 -2265 210 244 0 0 chr11 120968443 120968488 -27814984 - MIR SINE MIR 0 262 218 349 220 52 10 chr11 120968578 120968677 -27814795 - L1ME LINE L1 -563 5599 5490 1975 130 3 75 chr11 120968687 120969048 -27814424 - MER44D DNA MER2_type 0 609 5 23 0 0 0 chr11 120969233 120969256 -27814216 + AT_rich Low_complexity Low_complexity 1 23 0 1384 167 26 40 chr11 120969256 120969672 -27813800 - L1MA9 LINE L1 -22 6290 5785 1186 124 6 0 chr11 120969728 120969905 -27813567 - L1MA9 LINE L1 -735 5577 5400 * 4131 168 6 0 chr11 120969900 120970632 -27812840 - L1MA9 LINE L1 -1095 5051 4316 1573 54 0 54 chr11 120972627 120972831 -27810641 + AluY SINE Alu 1 193 -118 308 106 0 0 chr11 120972831 120972878 -27810594 + AluY SINE Alu 248 294 -7 2244 150 47 26 chr11 120973110 120973490 -27809982 + MLT1B LTR MaLR 3 390 0 353 359 100 31 chr11 120973748 120974038 -27809434 + L2 LINE L2 2963 3272 0 269 275 101 49 chr11 120974186 120974351 -27809121 - MIR3 SINE MIR -18 190 16 432 0 0 0 chr11 120974588 120974636 -27808836 + (CA)n Simple_repeat Simple_repeat 2 49 0 2448 73 0 25 chr11 120975403 120975717 -27807755 - AluY SINE Alu -5 306 1 2318 90 0 13 chr11 120977781 120978081 -27805391 - AluSc SINE Alu -13 296 1 26 50 0 0 chr11 120978162 120978202 -27805270 + AT_rich Low_complexity Low_complexity 1 40 0 227 324 64 69 chr11 120978598 120978771 -27804701 - MIR SINE MIR -1 261 90 348 24 0 0 chr11 120978926 120978967 -27804505 + (TG)n Simple_repeat Simple_repeat 1 41 0 1853 235 30 26 chr11 120980614 120981074 -27802398 + LTR40b LTR ERVL 1 462 0 2397 83 3 22 chr11 120981445 120981759 -27801713 - AluY SINE Alu -3 308 1 199 365 117 21 chr11 120981877 120982022 -27801450 + L2 LINE L2 3089 3247 -25 2104 110 3 32 chr11 120982541 120982849 -27800623 + AluSq SINE Alu 1 299 -14 22 0 0 0 chr11 120983653 120983675 -27799797 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr11 120984029 120984064 -27799408 + AT_rich Low_complexity Low_complexity 1 35 0 411 306 43 57 chr11 120984081 120984431 -27799041 - L1ME LINE L1 -461 5660 5316 317 144 19 0 chr11 120984438 120984502 -27798970 - MLT1E LTR MaLR -466 76 11 1556 135 55 29 chr11 120985598 120985955 -27797517 - MER61B LTR ERV1 0 425 1 301 312 106 67 chr11 120986329 120986810 -27796662 - L1ME LINE L1 -1517 4629 4130 21 36 0 0 chr11 120987072 120987100 -27796372 + AT_rich Low_complexity Low_complexity 1 28 0 756 314 153 38 chr11 120987310 120987865 -27795607 + L3 LINE CR1 284 902 -675 1474 278 14 9 chr11 120987946 120988388 -27795084 - LTR16A LTR ERVL -6 444 1 443 238 0 0 chr11 120989178 120989262 -27794210 - L2 LINE L2 -5 3308 3225 418 276 58 32 chr11 120989421 120989577 -27793895 + L3 LINE CR1 1032 1191 -386 928 268 80 38 chr11 120989684 120990084 -27793388 + MLT1J2 LTR MaLR 34 450 0 1632 197 27 3 chr11 120990091 120990391 -27793081 - AluJo SINE Alu -5 307 1 187 337 96 0 chr11 120990674 120990757 -27792715 + L2 LINE L2 3181 3271 -1 239 0 32 0 chr11 120991134 120991165 -27792307 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 232 321 85 38 chr11 120991557 120991663 -27791809 + L2 LINE L2 3156 3266 -6 365 232 11 74 chr11 120991767 120991862 -27791610 + L2 LINE L2 3182 3270 -43 1949 217 34 61 chr11 120992004 120992649 -27790823 - MLT1E2 LTR MaLR 0 626 1 575 227 24 54 chr11 120992652 120992862 -27790610 - MLT1E LTR MaLR -342 200 1 671 292 51 53 chr11 120992862 120993293 -27790179 + HAL1 LINE L1 2076 2505 -2 369 356 106 53 chr11 120993707 120994067 -27789405 + L2 LINE L2 2894 3272 0 324 269 41 89 chr11 120994106 120994477 -27788995 - MLT1H LTR MaLR -16 533 99 249 267 116 12 chr11 120994578 120994664 -27788808 - MIR3 SINE MIR -13 195 101 246 274 177 12 chr11 120994778 120994942 -27788530 - L2 LINE L2 -1649 1665 1475 248 356 40 48 chr11 120995204 120995454 -27788018 - L2 LINE L2 -1898 1416 1169 22 56 0 0 chr11 120995879 120995915 -27787557 + AT_rich Low_complexity Low_complexity 1 36 0 429 301 62 28 chr11 120995964 120996140 -27787332 - MIR3 SINE MIR -11 197 16 327 279 149 7 chr11 120996461 120996615 -27786857 - HAL1 LINE L1 -849 1658 1483 1054 57 14 0 chr11 120996616 120996756 -27786716 - L1PA5 LINE L1 0 6154 6013 703 12 0 0 chr11 120996756 120996839 -27786633 + L1PA5 LINE L1 5791 5873 -281 428 349 64 48 chr11 120996946 120997276 -27786196 - L1MEd LINE L1 -4887 1232 898 2034 144 8 24 chr11 120997417 120997791 -27785681 - L1MB1 LINE L1 -3 6165 5798 180 0 0 0 chr11 120998236 120998256 -27785216 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2156 94 7 3 chr11 120998266 120998553 -27784919 - AluSx SINE Alu -24 288 1 192 97 0 0 chr11 120998865 120998896 -27784576 + (T)n Simple_repeat Simple_repeat 1 31 0 2588 112 44 12 chr11 120999110 120999521 -27783951 - MER61B LTR ERV1 -1 424 1 434 271 186 5 chr11 121000787 121001008 -27782464 - MIR SINE MIR -1 261 1 21 36 0 0 chr11 121002250 121002278 -27781194 + AT_rich Low_complexity Low_complexity 1 28 0 774 266 89 22 chr11 121002360 121002698 -27780774 - L2 LINE L2 0 3313 2918 583 304 122 30 chr11 121002866 121003018 -27780454 + MIR SINE MIR 4 187 -75 1941 186 57 59 chr11 121003018 121003524 -27779948 + MLT1D LTR MaLR 1 505 0 583 304 122 30 chr11 121003524 121003608 -27779864 + MIR SINE MIR 187 262 0 23 33 0 0 chr11 121003644 121003674 -27779798 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr11 121004614 121004643 -27778829 + AT_rich Low_complexity Low_complexity 1 29 0 2685 264 108 84 chr11 121004660 121007023 -27776449 - HAL1 LINE L1 -86 2421 4 32 57 0 0 chr11 121007030 121007083 -27776389 + AT_rich Low_complexity Low_complexity 1 53 0 587 330 40 5 chr11 121007178 121007378 -27776094 + MIR SINE MIR 12 218 -44 430 300 36 99 chr11 121008358 121008862 -27774610 + LTR67 LTR ERVL 12 483 -74 331 236 34 45 chr11 121010355 121010444 -27773028 + L2 LINE L2 2990 3077 -195 229 186 17 51 chr11 121010556 121010615 -27772857 + L2 LINE L2 3216 3272 0 401 368 140 19 chr11 121010693 121011228 -27772244 - L2 LINE L2 -478 2836 2237 181 329 63 25 chr11 121012629 121012708 -27770764 + MIR3 SINE MIR 87 168 -40 1198 200 69 13 chr11 121012766 121013207 -27770265 + MLT1D LTR MaLR 1 477 -28 192 179 26 0 chr11 121013578 121013617 -27769855 - L2 LINE L2 0 3313 3274 318 26 0 0 chr11 121013793 121013832 -27769640 + (CA)n Simple_repeat Simple_repeat 2 40 0 266 189 40 14 chr11 121013916 121013990 -27769482 + (TA)n Simple_repeat Simple_repeat 1 76 0 447 312 26 77 chr11 121014066 121014451 -27769021 - L2 LINE L2 -238 3034 2660 791 274 11 23 chr11 121014554 121014817 -27768655 - MIR SINE MIR -1 261 2 1093 160 5 57 chr11 121014985 121015197 -27768275 - AluJo SINE Alu -22 290 90 318 271 53 53 chr11 121015449 121015582 -27767890 + L1ME4a LINE L1 5988 6120 -1 196 280 20 0 chr11 121015760 121015810 -27767662 - L3 LINE CR1 -3 1574 1524 346 333 21 21 chr11 121015987 121016131 -27767341 + L2 LINE L2 2533 2676 -638 395 244 172 0 chr11 121016204 121016370 -27767102 - MLT1J2 LTR MaLR 0 422 263 333 208 44 18 chr11 121016447 121016554 -27766918 - MLT1J2 LTR MaLR -320 127 21 444 336 0 0 chr11 121016604 121016744 -27766728 + L2 LINE L2 2937 3076 -237 1057 272 46 33 chr11 121016745 121017204 -27766268 + MLT1J LTR MaLR 1 465 -46 202 200 0 0 chr11 121017223 121017263 -27766209 - MIR3 SINE MIR -52 156 117 212 288 65 86 chr11 121017599 121017738 -27765734 - L2 LINE L2 -251 3021 2886 247 315 68 41 chr11 121019594 121019740 -27763732 - MIR3 SINE MIR -1 207 58 1940 89 0 0 chr11 121019767 121020013 -27763459 - AluY SINE Alu -5 306 61 1976 121 113 35 chr11 121020140 121020537 -27762935 + MSTA LTR MaLR 1 428 0 1520 208 39 20 chr11 121020665 121021021 -27762451 - MLT1A2 LTR MaLR -11 363 1 1075 136 6 6 chr11 121021101 121021263 -27762209 + AluJb SINE Alu 137 298 -14 183 80 0 0 chr11 121022019 121022044 -27761428 + (TTTTC)n Simple_repeat Simple_repeat 4 28 0 252 91 18 36 chr11 121023040 121023095 -27760377 + L1MA6 LINE L1 6242 6295 -5 224 258 0 101 chr11 121023480 121023569 -27759903 - MIR SINE MIR -120 142 63 803 253 57 79 chr11 121023574 121023981 -27759491 - LTR33 LTR ERVL -112 409 12 5819 99 16 30 chr11 121024175 121024372 -27759100 + MER4D LTR ERV1 1 199 -673 2022 131 14 3 chr11 121024372 121024702 -27758770 + AluSx SINE Alu 1 333 0 5819 99 16 30 chr11 121024702 121025388 -27758084 + MER4D LTR ERV1 199 872 0 382 327 26 7 chr11 121025416 121025569 -27757903 + MIR SINE MIR 54 209 -53 916 271 20 8 chr11 121025580 121025824 -27757648 + MIR SINE MIR 10 256 -6 478 277 9 9 chr11 121026366 121026478 -27756994 - L2 LINE L2 -19 3294 3183 401 285 120 45 chr11 121027088 121027486 -27755986 - MLT1J2 LTR MaLR -7 406 21 554 187 65 0 chr11 121028413 121028520 -27754952 - MER81 DNA DNA 0 114 1 197 280 206 9 chr11 121028817 121028924 -27754548 - L2 LINE L2 0 3272 3145 783 326 168 15 chr11 121028995 121029591 -27753881 - L2 LINE L2 -167 3146 2455 242 331 85 15 chr11 121029608 121029738 -27753734 + L2 LINE L2 3134 3272 0 308 161 0 18 chr11 121030516 121030572 -27752900 + L2 LINE L2 3218 3272 0 28 29 0 0 chr11 121031012 121031047 -27752425 + AT_rich Low_complexity Low_complexity 1 35 0 561 242 170 16 chr11 121031165 121031492 -27751980 - L1MC4a LINE L1 -372 5749 5539 3135 203 35 9 chr11 121032479 121033114 -27750358 + MER82 DNA MER2_type 3 653 0 2326 145 90 7 chr11 121033465 121033886 -27749586 - L1PA16 LINE L1 0 6166 5711 417 198 0 0 chr11 121033963 121034044 -27749428 + MER53 DNA DNA 4 84 -105 2865 161 32 15 chr11 121034282 121034817 -27748655 - L1MB1 LINE L1 -1 6167 5624 494 242 0 73 chr11 121035574 121035739 -27747733 - L2 LINE L2 0 3313 3161 1045 239 145 68 chr11 121036211 121036243 -27747229 - L2 LINE L2 0 3313 3285 2291 145 28 14 chr11 121036243 121036602 -27746870 - THE1B LTR MaLR 0 364 1 1045 239 145 68 chr11 121036602 121037198 -27746274 - L2 LINE L2 -28 3285 2651 386 178 158 33 chr11 121037423 121037575 -27745897 - MER5B DNA MER1_type -4 174 4 761 249 5 5 chr11 121037873 121038058 -27745414 - MER5A DNA MER1_type -4 185 1 2451 237 59 19 chr11 121038921 121039650 -27743822 - L1ME1 LINE L1 -5 6161 5404 285 384 34 24 chr11 121039717 121039923 -27743549 + L3 LINE CR1 219 426 -1151 800 39 0 19 chr11 121040800 121040904 -27742568 + L1PA3 LINE L1 6051 6152 -3 228 318 92 52 chr11 121041353 121041526 -27741946 - MER5A DNA MER1_type 0 189 10 268 283 0 0 chr11 121041893 121041953 -27741519 + L2 LINE L2 3213 3272 0 683 269 95 23 chr11 121042379 121042876 -27740596 + L1M4 LINE L1 2638 3189 -2957 230 185 68 27 chr11 121043056 121043202 -27740270 + (TA)n Simple_repeat Simple_repeat 1 152 0 1219 304 68 22 chr11 121043312 121044290 -27739182 + L1M4 LINE L1 3341 4362 -1784 23 33 0 0 chr11 121044365 121044395 -27739077 + AT_rich Low_complexity Low_complexity 1 30 0 414 309 136 36 chr11 121044395 121044983 -27738489 + L1M4 LINE L1 4513 5159 -987 411 339 0 0 chr11 121045064 121045185 -27738287 + L2 LINE L2 3192 3312 -1 25 95 0 0 chr11 121045436 121045510 -27737962 + AT_rich Low_complexity Low_complexity 1 74 0 557 173 55 0 chr11 121045534 121045644 -27737828 - FLAM_A SINE Alu -17 116 1 245 286 0 0 chr11 121046573 121046636 -27736836 - MLT1K LTR MaLR -2 586 524 315 266 63 21 chr11 121047227 121047370 -27736102 + L1M4 LINE L1 2344 2492 -3654 733 62 0 0 chr11 121047831 121047928 -27735544 - AluSg/x SINE Alu -1 309 213 32 0 0 0 chr11 121047940 121047972 -27735500 + AT_rich Low_complexity Low_complexity 1 32 0 22 56 0 0 chr11 121047989 121048025 -27735447 + AT_rich Low_complexity Low_complexity 1 36 0 201 74 0 0 chr11 121048057 121048084 -27735388 + (TG)n Simple_repeat Simple_repeat 2 28 0 239 370 22 0 chr11 121048600 121048692 -27734780 - MIR SINE MIR -149 113 20 303 198 111 0 chr11 121048810 121048891 -27734581 - L2 LINE L2 -44 3269 3180 1289 164 5 10 chr11 121048926 121049134 -27734338 + AluJb SINE Alu 85 291 -21 231 179 26 26 chr11 121049332 121049410 -27734062 + (TAGA)n Simple_repeat Simple_repeat 1 78 0 245 352 76 0 chr11 121050726 121050831 -27732641 - L2 LINE L2 0 3272 3160 325 237 145 53 chr11 121051422 121051574 -27731898 + MIR SINE MIR 88 253 -9 935 277 78 64 chr11 121051811 121052359 -27731113 + LTR67 LTR ERVL 2 557 0 749 291 42 93 chr11 121052667 121053097 -27730375 - L2 LINE L2 -5 3308 2901 565 335 55 26 chr11 121053105 121053451 -27730021 - L2 LINE L2 -967 2347 1992 255 31 0 0 chr11 121053813 121053845 -27729627 + (TG)n Simple_repeat Simple_repeat 2 33 0 219 256 12 81 chr11 121054414 121054500 -27728972 - L2 LINE L2 0 3272 3193 200 231 123 62 chr11 121056060 121056125 -27727347 - MIR3 SINE MIR -24 184 116 3334 221 70 24 chr11 121056237 121057305 -27726167 - L1ME2 LINE L1 -19 6214 5106 1995 205 20 36 chr11 121057374 121057818 -27725654 - MLT1C LTR MaLR 0 467 31 578 200 40 8 chr11 121057852 121057977 -27725495 - MER106A DNA MER1_type -36 200 72 5066 244 62 22 chr11 121057977 121059478 -27723994 - L1ME2 LINE L1 -1359 4856 3274 1578 176 44 0 chr11 121059478 121059751 -27723721 - AluJb SINE Alu -27 285 1 5066 244 62 22 chr11 121059751 121060002 -27723470 - L1ME2 LINE L1 -2941 3274 3034 345 266 11 21 chr11 121060007 121060101 -27723371 + LTR46 LTR ERV1 1 93 -367 278 221 71 26 chr11 121060162 121060275 -27723197 + LTR46 LTR ERV1 309 426 -34 2515 238 67 20 chr11 121060293 121061471 -27722001 - L1ME2 LINE L1 -3185 3030 1844 6232 250 69 11 chr11 121061494 121062964 -27720508 - L1M4 LINE L1 -1047 5099 3470 261 57 0 0 chr11 121062964 121062999 -27720473 + (TG)n Simple_repeat Simple_repeat 1 35 0 6232 250 69 11 chr11 121062999 121063630 -27719842 - L1M4 LINE L1 -2676 3470 2877 1556 230 30 48 chr11 121063665 121064169 -27719303 + L1ME1 LINE L1 5665 6159 -7 429 54 0 0 chr11 121065712 121065768 -27717704 + (CA)n Simple_repeat Simple_repeat 2 57 0 311 314 88 52 chr11 121065782 121065976 -27717496 + MIR SINE MIR 13 213 -49 200 178 89 0 chr11 121066038 121066083 -27717389 - L2 LINE L2 0 3313 3265 276 30 0 0 chr11 121066227 121066260 -27717212 + (CA)n Simple_repeat Simple_repeat 2 34 0 534 298 164 60 chr11 121068893 121069343 -27714129 + MLT1J LTR MaLR 5 501 -10 25 0 0 0 chr11 121069392 121069417 -27714055 + AT_rich Low_complexity Low_complexity 1 25 0 297 224 15 0 chr11 121069925 121069992 -27713480 - LTR67 LTR ERVL -117 440 373 2233 105 3 0 chr11 121070382 121070678 -27712794 + AluSp SINE Alu 1 297 -16 423 321 15 8 chr11 121070776 121070910 -27712562 - L2 LINE L2 0 3313 3179 275 269 25 50 chr11 121071070 121071189 -27712283 + MER103 DNA DNA 6 121 -45 216 158 0 0 chr11 121071890 121071928 -27711544 + (CA)n Simple_repeat Simple_repeat 2 39 0 343 331 40 40 chr11 121073859 121074034 -27709438 + L2 LINE L2 3098 3272 0 543 252 0 24 chr11 121074158 121074281 -27709191 + MER82 DNA MER2_type 1 120 -533 263 337 48 12 chr11 121074312 121074396 -27709076 - Tigger2 DNA MER2_type -1508 1210 1131 1474 101 5 10 chr11 121074396 121074595 -27708877 - AluSg/x SINE Alu -12 300 103 263 337 48 12 chr11 121074595 121074676 -27708796 - Tigger2 DNA MER2_type -1587 1131 1039 2170 210 42 2 chr11 121074928 121075357 -27708115 + MER82 DNA MER2_type 201 646 -7 261 289 48 0 chr11 121075394 121075477 -27707995 + MIR SINE MIR 163 249 -13 243 329 20 27 chr11 121075484 121075633 -27707839 - L2 LINE L2 -205 3067 2920 229 388 7 7 chr11 121076054 121076201 -27707271 + MER5A DNA MER1_type 43 189 0 1927 152 3 3 chr11 121076992 121077281 -27706191 + AluSx SINE Alu 1 289 -23 2269 180 21 40 chr11 121077345 121077817 -27705655 - MER66B LTR ERV1 -23 463 1 479 305 52 34 chr11 121078201 121078434 -27705038 + MIR SINE MIR 20 256 -6 318 167 0 0 chr11 121078855 121078915 -27704557 + (CA)n Simple_repeat Simple_repeat 1 60 0 2176 182 15 39 chr11 121079651 121080057 -27703415 - MSTD LTR MaLR 0 396 1 381 274 38 0 chr11 121080146 121080252 -27703220 + MIR SINE MIR 15 124 -138 2360 102 0 3 chr11 121080304 121080609 -27702863 - AluSc SINE Alu -5 304 1 2581 143 34 5 chr11 121080685 121081097 -27702375 + MSTA LTR MaLR 1 424 -4 222 316 0 6 chr11 121082129 121082290 -27701182 + (TG)n Simple_repeat Simple_repeat 1 159 0 662 252 155 0 chr11 121082400 121082606 -27700866 + MIR SINE MIR 15 252 -10 4531 73 62 7 chr11 121083198 121083596 -27699876 + LTR66 LTR ERVL 1 442 -168 567 107 0 0 chr11 121083596 121083680 -27699792 + (TA)n Simple_repeat Simple_repeat 1 84 0 4531 73 62 7 chr11 121083680 121083859 -27699613 + LTR66 LTR ERVL 442 610 0 240 35 0 0 chr11 121083903 121083932 -27699540 + (CATATA)n Simple_repeat Simple_repeat 2 30 0 227 184 0 0 chr11 121083954 121083992 -27699480 + L1MC4 LINE L1 6671 6708 -1334 1206 158 64 5 chr11 121084064 121084267 -27699205 + AluJb SINE Alu 85 299 -13 2206 176 70 12 chr11 121084819 121084980 -27698492 + MSTB LTR MaLR 1 151 -275 2263 94 3 13 chr11 121084980 121085289 -27698183 + AluSg SINE Alu 1 306 -4 2206 176 70 12 chr11 121085289 121085530 -27697942 + MSTB LTR MaLR 151 426 0 10022 166 16 16 chr11 121085530 121087181 -27696291 + MSTB-int LTR MaLR 1 1651 0 588 198 87 0 chr11 121087181 121087307 -27696165 + MSTB LTR MaLR 1 137 -289 189 0 0 0 chr11 121088259 121088280 -27695192 + (ATTTG)n Simple_repeat Simple_repeat 4 24 0 6253 177 34 18 chr11 121089221 121090885 -27692587 + L1PA16 LINE L1 3909 5754 -412 2200 75 3 0 chr11 121090885 121091167 -27692305 + AluY SINE Alu 29 311 0 6253 177 34 18 chr11 121091167 121091585 -27691887 + L1PA16 LINE L1 5754 6164 -2 29 28 0 0 chr11 121091588 121091624 -27691848 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr11 121091766 121091788 -27691684 + AT_rich Low_complexity Low_complexity 1 22 0 187 250 45 0 chr11 121092083 121092127 -27691345 - MER5B DNA MER1_type -125 53 8 518 239 179 0 chr11 121092142 121092276 -27691196 - MER5A DNA MER1_type 0 189 32 237 263 35 0 chr11 121092617 121092674 -27690798 - MIR SINE MIR -107 155 97 220 154 39 39 chr11 121093034 121093086 -27690386 + GA-rich Low_complexity Low_complexity 4 55 0 14830 126 37 24 chr11 121093806 121093854 -27689618 + Tigger1 DNA MER2_type 12 58 -2360 1931 123 0 52 chr11 121093854 121094162 -27689310 - AluSq SINE Alu -16 297 6 14830 126 37 24 chr11 121094162 121094715 -27688757 + Tigger1 DNA MER2_type 58 603 -1815 194 0 39 0 chr11 121094715 121094741 -27688731 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 14830 126 37 24 chr11 121094741 121096515 -27686957 + Tigger1 DNA MER2_type 603 2418 0 1679 234 112 7 chr11 121096554 121097008 -27686464 - LTR33 LTR ERVL -8 513 12 426 323 159 5 chr11 121097571 121097791 -27685681 + MER102a DNA MER1_type 77 330 0 1914 213 60 22 chr11 121097964 121098414 -27685058 + MLT1C LTR MaLR 1 467 0 321 183 17 0 chr11 121099420 121099480 -27683992 - LTR52-int LTR ERVL -3493 63 3 1843 205 50 22 chr11 121099482 121099850 -27683622 - LTR52 LTR ERVL -3 418 37 1701 197 3 0 chr11 121099850 121100144 -27683328 + AluJb SINE Alu 1 295 -17 1843 205 50 22 chr11 121100144 121100179 -27683293 - LTR52 LTR ERVL -384 37 4 458 275 101 17 chr11 121100218 121100396 -27683076 + MIR SINE MIR 62 254 -8 2211 115 0 19 chr11 121100888 121101202 -27682270 + AluSg SINE Alu 1 308 -2 550 192 77 8 chr11 121101283 121101413 -27682059 + L1ME4a LINE L1 5971 6109 -12 337 322 130 53 chr11 121101433 121101512 -27681960 + L2 LINE L2 2742 2813 -459 2915 179 62 10 chr11 121101512 121102026 -27681446 + MLT1F LTR MaLR 1 541 -1 337 322 130 53 chr11 121102026 121102426 -27681046 + L2 LINE L2 2813 3267 -5 1912 183 51 22 chr11 121103271 121103626 -27679846 - MLT1A1 LTR MaLR 0 365 1 2178 128 3 6 chr11 121103735 121104048 -27679424 - AluSx SINE Alu 0 312 1 267 309 72 5 chr11 121104048 121104242 -27679230 - L1M4 LINE L1 -2661 3485 3279 271 246 0 0 chr11 121104316 121104381 -27679091 + L1ME3A LINE L1 6096 6160 -10 990 293 128 49 chr11 121105429 121106005 -27677467 - L1MEd LINE L1 -5417 702 81 1792 171 38 52 chr11 121106573 121106941 -27676531 + MLT1A1 LTR MaLR 1 363 -2 222 163 23 0 chr11 121107014 121107057 -27676415 + (TA)n Simple_repeat Simple_repeat 2 45 0 2150 116 7 0 chr11 121107470 121107762 -27675710 - AluSx SINE Alu -18 294 1 383 259 80 0 chr11 121107923 121108035 -27675437 + L2 LINE L2 3193 3313 0 659 261 132 46 chr11 121109773 121110167 -27673305 + L1ME LINE L1 5374 5801 -365 645 240 146 10 chr11 121111949 121112141 -27671331 + MER58A DNA MER1_type 6 223 -1 21 0 0 0 chr11 121112612 121112633 -27670839 + AT_rich Low_complexity Low_complexity 1 21 0 2545 193 110 18 chr11 121113205 121114221 -27669251 + L1MC3 LINE L1 4724 5403 -743 19945 156 61 14 chr11 121114238 121114431 -27669041 + L1 LINE L1 16 198 -7367 1639 179 13 19 chr11 121114431 121114739 -27668733 + AluJb SINE Alu 1 306 -6 19945 156 61 14 chr11 121114739 121116950 -27666522 + L1 LINE L1 198 2696 -4869 2158 119 0 0 chr11 121116950 121117244 -27666228 + AluY SINE Alu 1 294 -17 19945 156 61 14 chr11 121117244 121118899 -27664573 + L1 LINE L1 2696 4271 -3294 689 188 13 34 chr11 121118912 121119061 -27664411 - L1 LINE L1 -3628 2518 2373 2770 200 15 12 chr11 121119062 121119723 -27663749 + L1 LINE L1 4269 4931 -2634 1966 123 3 0 chr11 121119719 121120037 -27663435 + L1 LINE L1 5985 6303 -1262 * 4289 168 79 4 chr11 121120044 121120871 -27662601 + L1MC3 LINE L1 6896 7784 -1 390 277 142 7 chr11 121120873 121121021 -27662451 - MIR SINE MIR -87 175 8 2563 42 7 3 chr11 121121045 121121353 -27662119 - AluY SINE Alu -2 309 1 182 36 0 36 chr11 121121884 121121912 -27661560 + (TCCCC)n Simple_repeat Simple_repeat 3 29 0 192 77 0 0 chr11 121121956 121121982 -27661490 + (TC)n Simple_repeat Simple_repeat 2 27 0 1757 171 38 0 chr11 121122090 121122383 -27661089 - AluJb SINE Alu -8 304 1 2416 99 24 3 chr11 121122515 121122849 -27660623 - L1PA14 LINE L1 -4 6157 5817 185 283 33 50 chr11 121123169 121123229 -27660243 + MIR SINE MIR 16 74 -188 4542 130 71 51 chr11 121124084 121125514 -27657958 + pTR5 LTR ERV1 742 2606 0 49 18 0 0 chr11 121126303 121126359 -27657113 + AT_rich Low_complexity Low_complexity 1 56 0 7258 151 46 3 chr11 121126779 121128974 -27654498 + L1MA5A LINE L1 4019 6292 -5 651 196 7 43 chr11 121129016 121129154 -27654318 + MLT1G LTR MaLR 437 569 -21 360 318 31 0 chr11 121129238 121129367 -27654105 + MLT1L LTR MaLR 434 566 -49 2255 106 3 3 chr11 121129856 121130157 -27653315 - AluSg SINE Alu -9 301 1 1557 171 47 92 chr11 121130527 121130907 -27652565 - MLT1A1 LTR MaLR -2 363 1 180 255 20 20 chr11 121131849 121131900 -27651572 + MIR SINE MIR 200 250 -12 697 221 38 6 chr11 121132378 121132536 -27650936 - MIR SINE MIR -86 176 14 2341 90 6 0 chr11 121133085 121133396 -27650076 - AluSp SINE Alu 0 313 1 298 194 97 0 chr11 121134597 121134669 -27648803 - MLT1J2 LTR MaLR -21 429 351 232 358 98 61 chr11 121134756 121135083 -27648389 - L2 LINE L2 -9 3263 2925 381 79 4 7 chr11 121135093 121135153 -27648319 + L1P4 LINE L1 5728 5786 -377 752 132 0 0 chr11 121135154 121135260 -27648212 - AluSc SINE Alu -202 107 2 1709 175 11 7 chr11 121135265 121135550 -27647922 - AluJo SINE Alu -20 292 7 558 200 64 0 chr11 121135553 121135678 -27647794 + L1MA10 LINE L1 6201 6333 -1 3259 61 15 0 chr11 121135692 121136084 -27647388 + L1PA11 LINE L1 5769 6166 -8 22 0 0 0 chr11 121136086 121136108 -27647364 + AT_rich Low_complexity Low_complexity 1 22 0 404 321 112 55 chr11 121136446 121137098 -27646374 - L2 LINE L2 -821 2493 1805 301 297 43 84 chr11 121137101 121137274 -27646198 + L1MC4a LINE L1 3118 3274 -2872 2167 106 7 7 chr11 121137274 121137567 -27645905 + AluSx SINE Alu 1 293 -19 301 297 43 84 chr11 121137567 121137716 -27645756 + L1MC4a LINE L1 3274 3427 -2719 452 305 158 44 chr11 121138105 121138669 -27644803 + L1MC4a LINE L1 4613 5240 -906 596 226 156 10 chr11 121138676 121138875 -27644597 + L1MC4a LINE L1 5261 5488 -2320 2078 194 34 38 chr11 121138883 121139382 -27644090 - MLT1D LTR MaLR -6 499 3 1111 238 77 90 chr11 121139384 121139927 -27643545 + L1MC4a LINE L1 5489 6024 -1784 215 312 169 0 chr11 121140002 121140079 -27643393 + L2 LINE L2 2999 3088 -184 391 264 47 9 chr11 121140643 121140748 -27642724 + HsTC2c DNA Tc2 87 195 -534 385 228 41 32 chr11 121140748 121140871 -27642601 + MER94 DNA DNA 2 125 -9 1928 247 35 34 chr11 121140873 121141408 -27642064 + HsTC2c DNA Tc2 192 727 -2 286 61 41 0 chr11 121141935 121141984 -27641488 + (TTG)n Simple_repeat Simple_repeat 1 51 0 2019 111 7 0 chr11 121141992 121142263 -27641209 - AluSx SINE Alu -39 273 1 201 147 0 0 chr11 121142343 121142377 -27641095 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 246 165 165 13 chr11 121142378 121142457 -27641015 - L1MC4 LINE L1 -1340 6702 6612 396 230 22 0 chr11 121142465 121142600 -27640872 + (TA)n Simple_repeat Simple_repeat 1 138 0 825 157 0 0 chr11 121143851 121143972 -27639500 + Tigger7 DNA MER2_type 2367 2487 0 1835 143 111 13 chr11 121145098 121145405 -27638067 + MER44D DNA MER2_type 1 607 -2 397 254 100 15 chr11 121145841 121145971 -27637501 - MER5A DNA MER1_type -42 147 7 260 289 31 21 chr11 121146012 121146109 -27637363 - L2 LINE L2 -470 2844 2747 1840 207 66 36 chr11 121146558 121147056 -27636416 - Charlie1b DNA MER1_type -1 522 10 290 357 48 8 chr11 121147383 121147509 -27635963 - MER5B DNA MER1_type -43 135 5 23 68 0 0 chr11 121148166 121148210 -27635262 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr11 121148849 121148870 -27634602 + AT_rich Low_complexity Low_complexity 1 21 0 2176 205 54 56 chr11 121148974 121149481 -27633991 - L1MA9 LINE L1 -25 6287 5780 261 0 0 0 chr11 121149481 121149510 -27633962 + (GA)n Simple_repeat Simple_repeat 2 30 0 2176 205 54 56 chr11 121149510 121149645 -27633827 - L1MA9 LINE L1 -532 5780 5646 2318 87 0 3 chr11 121149795 121150083 -27633389 + AluSc SINE Alu 1 287 -22 310 125 0 31 chr11 121150224 121150288 -27633184 + (GGAA)n Simple_repeat Simple_repeat 2 63 0 496 332 125 0 chr11 121150704 121150936 -27632536 + MIR SINE MIR 1 261 -1 181 270 27 0 chr11 121150943 121150980 -27632492 + L2 LINE L2 3220 3257 -15 21 0 0 0 chr11 121151074 121151095 -27632377 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr11 121151982 121152024 -27631448 + AT_rich Low_complexity Low_complexity 1 42 0 2005 132 17 0 chr11 121153761 121153992 -27629480 - AluSx SINE Alu 0 312 125 180 0 0 0 chr11 121153992 121154012 -27629460 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 2005 132 17 0 chr11 121154012 121154140 -27629332 - AluSx SINE Alu -187 125 1 186 150 0 0 chr11 121154140 121154180 -27629292 + (TTTTC)n Simple_repeat Simple_repeat 3 42 0 22 0 0 0 chr11 121154735 121154757 -27628715 + AT_rich Low_complexity Low_complexity 1 22 0 2279 114 0 0 chr11 121156333 121156631 -27626841 + AluSq SINE Alu 1 298 -15 1856 174 0 6 chr11 121156704 121157015 -27626457 - AluJo SINE Alu -2 310 2 2273 97 0 13 chr11 121157023 121157321 -27626151 + AluSq SINE Alu 1 294 -19 490 269 40 7 chr11 121157618 121157767 -27625705 + MIR SINE MIR 53 206 -56 291 375 47 0 chr11 121157958 121158086 -27625386 + L2 LINE L2 3138 3271 -1 201 258 152 40 chr11 121158094 121158245 -27625227 + L2 LINE L2 2867 3034 -238 462 191 8 46 chr11 121159662 121159793 -27623679 + L1MB8 LINE L1 6044 6169 -9 201 74 0 0 chr11 121159833 121159860 -27623612 + (TG)n Simple_repeat Simple_repeat 2 28 0 213 39 0 0 chr11 121159887 121159913 -27623559 + (CAGA)n Simple_repeat Simple_repeat 2 27 0 50 0 0 0 chr11 121159944 121159994 -27623478 + AT_rich Low_complexity Low_complexity 1 50 0 452 288 35 66 chr11 121160105 121160303 -27623169 + MIR SINE MIR 14 205 -57 974 256 78 68 chr11 121160806 121161397 -27622075 + L1MEd LINE L1 587 1183 -4936 1433 58 0 21 chr11 121161497 121161685 -27621787 - AluY SINE Alu -71 240 57 219 260 0 0 chr11 121163229 121163279 -27620193 - L2 LINE L2 -1 3312 3263 193 335 92 57 chr11 121163268 121163704 -27619768 + L2 LINE L2 1957 2407 -907 * 2096 295 91 28 chr11 121164034 121165084 -27618388 - L2 LINE L2 -9 3304 2201 948 169 127 0 chr11 121165844 121166010 -27617462 - MER5A DNA MER1_type -2 187 1 224 171 132 26 chr11 121168049 121168125 -27615347 - MIR SINE MIR -74 188 105 183 129 0 0 chr11 121168217 121168248 -27615224 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 351 379 71 5 chr11 121168493 121168704 -27614768 - L3 LINE CR1 -17 1560 1336 393 228 233 79 chr11 121168744 121168933 -27614539 + MIR SINE MIR 40 257 -5 260 98 0 0 chr11 121168903 121168944 -27614528 + L2 LINE L2 3273 3313 0 * 341 277 164 44 chr11 121170054 121170213 -27613259 + MIR3 SINE MIR 10 187 -21 2175 96 0 49 chr11 121170904 121171228 -27612244 - AluSg SINE Alu -2 308 1 197 217 67 17 chr11 121171330 121171390 -27612082 + MER5B DNA MER1_type 1 63 -115 1951 167 0 0 chr11 121171390 121171701 -27611771 + AluSx SINE Alu 1 311 -1 192 274 65 73 chr11 121172246 121172370 -27611102 - MER5B DNA MER1_type -50 128 6 272 263 76 25 chr11 121172677 121172795 -27610677 - MIR SINE MIR -30 232 109 2234 89 0 3 chr11 121172900 121173182 -27610290 - AluSx SINE Alu -31 281 1 1043 227 108 65 chr11 121173917 121174379 -27609093 + MLT1D LTR MaLR 23 504 -1 297 0 0 0 chr11 121174827 121174860 -27608612 + (CA)n Simple_repeat Simple_repeat 2 34 0 325 275 87 20 chr11 121176220 121176344 -27607128 + MIR3 SINE MIR 52 186 -22 245 347 0 0 chr11 121176369 121176467 -27607005 - L1MA9 LINE L1 -38 6274 6177 436 265 68 12 chr11 121176585 121176747 -27606725 - L1MA9 LINE L1 -135 6177 6007 195 42 0 0 chr11 121176991 121177015 -27606457 + (T)n Simple_repeat Simple_repeat 1 24 0 27 0 0 0 chr11 121177031 121177058 -27606414 + GC_rich Low_complexity Low_complexity 1 27 0 505 195 29 28 chr11 121178464 121178640 -27604832 - MIR SINE MIR 0 262 8 1393 185 121 19 chr11 121178708 121178865 -27604607 + MLT1A2 LTR MaLR 9 149 -225 363 23 0 0 chr11 121178865 121178909 -27604563 + (TC)n Simple_repeat Simple_repeat 1 44 0 1393 185 121 19 chr11 121178909 121179064 -27604408 + MLT1A2 LTR MaLR 149 353 -21 383 292 246 8 chr11 121179067 121179327 -27604145 + L3 LINE CR1 1247 1568 -9 184 319 26 52 chr11 121179480 121179596 -27603876 + L2 LINE L2 2998 3110 -162 1748 227 18 45 chr11 121179639 121180084 -27603388 - MLT1C LTR MaLR 0 467 35 2161 115 3 0 chr11 121180090 121180378 -27603094 + AluSx SINE Alu 11 299 -13 216 0 0 0 chr11 121180494 121180518 -27602954 + (TA)n Simple_repeat Simple_repeat 2 25 0 275 248 101 47 chr11 121180604 121180733 -27602739 - L2 LINE L2 -5 3308 3173 4283 177 34 4 chr11 121180794 121181506 -27601966 + MER44D DNA MER2_type 1 605 0 1841 92 68 44 chr11 121183489 121183784 -27599688 - AluSc SINE Alu -4 305 4 231 170 94 0 chr11 121184221 121184274 -27599198 + L2 LINE L2 3214 3271 -1 192 278 198 0 chr11 121185429 121185555 -27597917 - MIR SINE MIR -1 261 111 1667 166 6 64 chr11 121187298 121187612 -27595860 - AluJo SINE Alu -16 296 1 6908 33 5 2 chr11 121188899 121189707 -27593765 - L1PA5 LINE L1 -1 6153 5344 2385 68 3 7 chr11 121190031 121190326 -27593146 + AluSc SINE Alu 1 294 -15 2034 123 39 32 chr11 121190494 121190803 -27592669 - AluSx SINE Alu -1 311 1 281 98 0 39 chr11 121191393 121191444 -27592028 + (CATA)n Simple_repeat Simple_repeat 4 52 0 269 278 14 0 chr11 121191795 121191867 -27591605 + L2 LINE L2 3192 3264 -8 953 171 0 18 chr11 121192349 121192513 -27590959 + AluJb SINE Alu 138 298 -14 7572 38 1 3 chr11 121192730 121193821 -27589651 + L1PA5 LINE L1 5065 6154 0 190 297 55 11 chr11 121194606 121194697 -27588775 + L3 LINE CR1 1139 1233 -344 216 258 30 0 chr11 121194719 121194785 -27588687 + L2 LINE L2 3205 3272 0 200 364 0 13 chr11 121194873 121194950 -27588522 + L2 LINE L2 3230 3305 -8 218 259 19 0 chr11 121194972 121195026 -27588446 + L3 LINE CR1 1386 1440 -137 716 240 19 62 chr11 121195559 121195817 -27587655 - MER112 DNA MER1_type -8 252 6 373 249 24 85 chr11 121195840 121195864 -27587608 + MIR SINE MIR 6 30 -232 2297 113 0 0 chr11 121195864 121196156 -27587316 + AluSc SINE Alu 1 292 -17 373 249 24 85 chr11 121196156 121196296 -27587176 + MIR SINE MIR 30 160 -102 386 52 0 17 chr11 121196884 121196942 -27586530 + Alu SINE Alu 244 300 0 235 230 7 86 chr11 121197052 121197204 -27586268 + GA-rich Low_complexity Low_complexity 3 142 0 714 274 116 0 chr11 121200834 121201049 -27582423 + MIR SINE MIR 23 262 0 189 74 0 0 chr11 121202483 121202510 -27580962 + (CA)n Simple_repeat Simple_repeat 1 27 0 23 0 0 0 chr11 121203126 121203149 -27580323 + AT_rich Low_complexity Low_complexity 1 23 0 26 74 0 0 chr11 121203642 121203696 -27579776 + AT_rich Low_complexity Low_complexity 1 54 0 21 0 0 0 chr11 121208084 121208105 -27575367 + AT_rich Low_complexity Low_complexity 1 21 0 878 144 8 0 chr11 121208106 121208238 -27575234 + AluSp SINE Alu 1 133 -180 225 0 0 0 chr11 121208238 121208263 -27575209 + (A)n Simple_repeat Simple_repeat 1 25 0 25 0 0 0 chr11 121208263 121208288 -27575184 + GC_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chr11 121208480 121208503 -27574969 + (A)n Simple_repeat Simple_repeat 1 23 0 1096 138 0 0 chr11 121208503 121208662 -27574810 + AluSg/x SINE Alu 121 279 -33 253 304 184 6 chr11 121209348 121209516 -27573956 - MIR SINE MIR -12 250 53 255 206 16 32 chr11 121210565 121210628 -27572844 - MER5A DNA MER1_type -88 101 40 297 109 0 0 chr11 121210646 121210692 -27572780 + (TG)n Simple_repeat Simple_repeat 2 47 0 2218 96 0 0 chr11 121210694 121210974 -27572498 - AluSx SINE Alu -32 280 1 373 286 89 24 chr11 121211081 121211249 -27572223 - MIR SINE MIR 0 262 84 21 0 0 0 chr11 121211601 121211622 -27571850 + AT_rich Low_complexity Low_complexity 1 21 0 192 77 0 0 chr11 121212441 121212467 -27571005 + (TG)n Simple_repeat Simple_repeat 1 26 0 14043 184 27 7 chr11 121212475 121213332 -27570140 + L1PB1 LINE L1 2568 3407 -3455 3964 28 0 4 chr11 121213332 121213791 -27569681 - L1PA5 LINE L1 0 6154 5698 14043 184 27 7 chr11 121213791 121216099 -27567373 + L1PB1 LINE L1 3407 5796 -1066 4907 202 18 1 chr11 121216100 121216902 -27566570 + L1PB1 LINE L1 6053 6867 0 237 33 0 0 chr11 121216992 121217022 -27566450 + (TG)n Simple_repeat Simple_repeat 2 31 0 528 202 59 8 chr11 121217904 121218023 -27565449 + MER5B DNA MER1_type 1 125 -53 688 183 92 92 chr11 121218023 121218263 -27565209 - L1MD3 LINE L1 0 7985 6120 250 237 0 17 chr11 121218267 121218326 -27565146 + MER5B DNA MER1_type 118 175 -3 365 143 39 26 chr11 121218329 121218406 -27565066 - MIR3 SINE MIR -48 160 83 3465 60 132 111 chr11 121219198 121219443 -27564029 + MER41B LTR ERV1 1 239 -396 539 166 7 110 chr11 121219443 121219588 -27563884 + FLAM_A SINE Alu 1 130 -3 3465 60 132 111 chr11 121219588 121219964 -27563508 + MER41B LTR ERV1 239 635 0 327 313 0 0 chr11 121220760 121220859 -27562613 + MIR SINE MIR 28 126 -136 554 313 62 9 chr11 121221259 121221470 -27562002 - MIR SINE MIR -15 247 26 194 250 150 25 chr11 121221826 121221906 -27561566 - L2 LINE L2 -9 3263 3174 555 205 16 8 chr11 121222260 121222387 -27561085 + MIR SINE MIR 75 202 -60 33 0 0 0 chr11 121222456 121222489 -27560983 + AT_rich Low_complexity Low_complexity 1 33 0 468 276 90 0 chr11 121222609 121222754 -27560718 - MER5A DNA MER1_type -6 183 26 390 241 52 38 chr11 121223029 121223192 -27560280 + MIR SINE MIR 44 208 -54 509 111 0 25 chr11 121223193 121223257 -27560215 + AluSc SINE Alu 216 280 -29 210 37 0 0 chr11 121223257 121223284 -27560188 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2288 113 3 3 chr11 121223291 121223600 -27559872 + AluSc SINE Alu 1 309 0 336 286 34 8 chr11 121224371 121224490 -27558982 + GA-rich Low_complexity Low_complexity 2 123 0 1062 175 76 91 chr11 121224687 121225060 -27558412 + MLT1A1 LTR MaLR 1 365 0 290 313 41 14 chr11 121225336 121225483 -27557989 + CT-rich Low_complexity Low_complexity 3 153 0 244 182 131 81 chr11 121226386 121226485 -27556987 + MIR SINE MIR 78 181 -81 246 310 86 9 chr11 121226524 121226640 -27556832 - MIR3 SINE MIR -72 136 12 407 339 18 12 chr11 121227149 121227314 -27556158 - MIR SINE MIR -73 189 24 282 259 89 18 chr11 121227865 121227977 -27555495 + MIR SINE MIR 68 187 -75 1310 194 0 4 chr11 121228304 121228541 -27554931 + MER46A DNA MER2_type 1 236 0 335 346 64 10 chr11 121228582 121228784 -27554688 - MIR SINE MIR -43 219 7 572 211 32 0 chr11 121229730 121229853 -27553619 - MIR SINE MIR -108 154 28 476 256 8 8 chr11 121230582 121230703 -27552769 + MIR SINE MIR 11 131 -131 270 160 27 13 chr11 121230722 121230797 -27552675 + CT-rich Low_complexity Low_complexity 5 80 0 200 317 50 20 chr11 121231724 121231825 -27551647 - MIR SINE MIR -101 161 58 320 292 39 19 chr11 121232284 121232438 -27551034 - MIR SINE MIR -15 247 91 217 272 37 0 chr11 121232483 121232564 -27550908 - L3b LINE CR1 -237 1346 1263 442 254 72 105 chr11 121232571 121232951 -27550521 + L1MC4a LINE L1 5545 5751 -370 589 301 47 17 chr11 121233245 121233481 -27549991 + MIR SINE MIR 12 254 -8 499 283 99 27 chr11 121235525 121235729 -27547743 - MIR SINE MIR -37 225 9 267 299 11 0 chr11 121235751 121235838 -27547634 + MIR SINE MIR 170 257 -5 1849 171 0 10 chr11 121237419 121237718 -27545754 - AluJb SINE Alu -16 296 1 433 274 91 11 chr11 121237874 121238049 -27545423 + MIR SINE MIR 4 192 -70 8234 231 81 35 chr11 121238145 121238911 -27544561 + L1ME1 LINE L1 2302 3031 -3135 923 236 79 0 chr11 121238911 121239114 -27544358 + MER20 DNA MER1_type 1 219 0 8234 231 81 35 chr11 121239114 121240266 -27543206 + L1ME1 LINE L1 3031 4129 -2037 1959 135 7 0 chr11 121240266 121240576 -27542896 + AluSp SINE Alu 1 312 0 8234 231 81 35 chr11 121240576 121241236 -27542236 + L1ME1 LINE L1 4129 4757 -1409 210 71 0 0 chr11 121241236 121241264 -27542208 + (CA)n Simple_repeat Simple_repeat 1 28 0 8234 231 81 35 chr11 121241264 121242374 -27541098 + L1ME1 LINE L1 4757 6165 -1 380 232 80 25 chr11 121242398 121242627 -27540845 + L1MC4 LINE L1 7821 7995 0 423 0 0 0 chr11 121243079 121243126 -27540346 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1976 103 0 63 chr11 121243128 121243428 -27540044 - AluSx SINE Alu -31 281 1 483 272 53 6 chr11 121245267 121245436 -27538036 + MIR SINE MIR 16 192 -70 842 218 17 6 chr11 121246436 121246610 -27536862 - MER5B DNA MER1_type -2 176 1 228 301 194 0 chr11 121247007 121247100 -27536372 + Charlie7 DNA MER1_type 10 120 -2492 532 222 19 0 chr11 121247236 121247344 -27536128 + MER81 DNA DNA 5 114 0 366 238 38 29 chr11 121247388 121247493 -27535979 + Charlie7 DNA MER1_type 212 317 -2295 241 206 79 16 chr11 121247493 121247556 -27535916 + Charlie7 DNA MER1_type 1434 1500 -1112 303 201 69 25 chr11 121247655 121247814 -27535658 + (TTAAA)n Simple_repeat Simple_repeat 4 169 0 2030 213 152 46 chr11 121247818 121248692 -27534780 + Charlie7 DNA MER1_type 1596 2562 -50 212 158 0 0 chr11 121248759 121248797 -27534675 + L2 LINE L2 3265 3302 -11 5530 126 18 15 chr11 121248797 121249688 -27533784 + L1MA7 LINE L1 5368 6261 -30 23 0 0 0 chr11 121249734 121249757 -27533715 + AT_rich Low_complexity Low_complexity 1 23 0 2361 102 3 0 chr11 121252074 121252379 -27531093 + AluSg SINE Alu 1 306 -4 732 52 0 0 chr11 121252384 121252481 -27530991 + (GGAA)n Simple_repeat Simple_repeat 4 100 0 234 289 0 0 chr11 121253298 121253350 -27530122 + polypurine Low_complexity Low_complexity 3 54 0 548 169 11 58 chr11 121253350 121253539 -27529933 + GA-rich Low_complexity Low_complexity 1 180 0 271 309 22 22 chr11 121254160 121254299 -27529173 + MIR SINE MIR 35 173 -89 277 259 0 12 chr11 121254322 121254403 -27529069 - HsTC2 DNA Tc2 -1813 85 6 328 294 0 10 chr11 121255033 121255135 -27528337 - MER5A DNA MER1_type -80 109 9 855 218 59 9 chr11 121256144 121256364 -27527108 - MIR SINE MIR -1 261 31 467 206 0 9 chr11 121257699 121258134 -27525338 + (CA)n Simple_repeat Simple_repeat 1 431 0 189 94 0 0 chr11 121258167 121258199 -27525273 + (CA)n Simple_repeat Simple_repeat 1 32 0 473 186 14 71 chr11 121258873 121259013 -27524459 + MIR SINE MIR 2 133 -129 1752 139 4 4 chr11 121260122 121260380 -27523092 + AluSc SINE Alu 39 296 -13 251 286 11 11 chr11 121260550 121260641 -27522831 - L2 LINE L2 -52 3261 3171 711 288 40 4 chr11 121260778 121261004 -27522468 + MIR SINE MIR 29 262 0 307 281 149 0 chr11 121261152 121261266 -27522206 + MIR SINE MIR 121 251 -11 305 248 99 72 chr11 121261301 121261523 -27521949 - L3 LINE CR1 -310 1267 1040 3015 131 8 2 chr11 121261587 121262059 -27521413 - L1MA3 LINE L1 -1 6304 5830 1338 107 0 0 chr11 121265151 121265328 -27518144 + AluSq SINE Alu 125 301 -12 248 328 30 11 chr11 121266877 121267021 -27516451 - MIR SINE MIR -59 149 3 268 172 0 140 chr11 121267478 121267571 -27515901 - L2 LINE L2 -76 3237 3158 636 281 91 5 chr11 121268127 121268342 -27515130 + MIR SINE MIR 16 249 -13 326 330 149 14 chr11 121271165 121271386 -27512086 - MIR SINE MIR 0 262 12 339 78 0 0 chr11 121271470 121271521 -27511951 + (CA)n Simple_repeat Simple_repeat 2 52 0 207 0 0 0 chr11 121271520 121271543 -27511929 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 2406 93 6 0 chr11 121271659 121271970 -27511502 - AluSq SINE Alu 0 313 1 205 345 42 42 chr11 121272049 121272168 -27511304 - L2 LINE L2 -13 3259 3141 297 267 107 47 chr11 121272701 121272771 -27510701 + MIR SINE MIR 77 141 -121 2371 96 76 17 chr11 121272771 121273115 -27510357 - THE1B LTR MaLR 0 364 1 297 267 107 47 chr11 121273115 121273194 -27510278 + MIR SINE MIR 141 235 -27 264 233 0 0 chr11 121273254 121273327 -27510145 + (CACCAT)n Simple_repeat Simple_repeat 1 73 0 234 0 0 0 chr11 121274209 121274235 -27509237 + (TTA)n Simple_repeat Simple_repeat 1 26 0 498 227 17 17 chr11 121274484 121274603 -27508869 - L2 LINE L2 0 3313 3195 2467 102 23 6 chr11 121274753 121275096 -27508376 - THE1B LTR MaLR -15 349 1 29 28 0 0 chr11 121275097 121275133 -27508339 + AT_rich Low_complexity Low_complexity 1 36 0 213 39 0 0 chr11 121275209 121275235 -27508237 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 227 241 276 0 chr11 121275235 121275322 -27508150 - L2 LINE L2 -13 3259 3149 386 213 11 21 chr11 121275492 121275586 -27507886 - L1MD3 LINE L1 0 7995 7903 2468 65 0 10 chr11 121275586 121275896 -27507576 - AluY SINE Alu -4 307 1 1014 205 62 0 chr11 121275954 121276164 -27507308 - MER58A DNA MER1_type 0 224 2 254 287 144 17 chr11 121276365 121276546 -27506926 - MIR SINE MIR -53 209 6 433 252 8 25 chr11 121277711 121277830 -27505642 + MIR SINE MIR 92 208 -54 667 259 117 82 chr11 121277837 121278323 -27505149 + MLT1J LTR MaLR 9 511 0 454 239 148 0 chr11 121278470 121278625 -27504847 + MER5B DNA MER1_type 1 178 0 185 250 21 0 chr11 121278809 121278857 -27504615 - MIR SINE MIR -85 123 75 1981 152 7 0 chr11 121279032 121279322 -27504150 + AluSx SINE Alu 1 292 -20 198 0 0 0 chr11 121280008 121280030 -27503442 + (T)n Simple_repeat Simple_repeat 1 22 0 1235 116 11 0 chr11 121280149 121280339 -27503133 + AluSq SINE Alu 118 309 -4 441 238 9 0 chr11 121282317 121282422 -27501050 + MIR SINE MIR 41 146 -62 400 292 145 62 chr11 121283922 121284318 -27499154 - L1MC/D LINE L1 -358 5884 5443 252 0 0 0 chr11 121284329 121284357 -27499115 + (TG)n Simple_repeat Simple_repeat 2 29 0 421 108 0 31 chr11 121284477 121284542 -27498930 + U2 snRNA snRNA 1 63 -125 1940 122 0 0 chr11 121284859 121285130 -27498342 + AluSx SINE Alu 7 277 -35 727 325 52 15 chr11 121285143 121285684 -27497788 - L1MC/D LINE L1 -1525 4621 4061 559 298 21 25 chr11 121285766 121286048 -27497424 + HAL1 LINE L1 1385 1665 -842 21 0 0 0 chr11 121286247 121286268 -27497204 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr11 121286463 121286495 -27496977 + AT_rich Low_complexity Low_complexity 1 32 0 230 227 45 23 chr11 121286681 121286769 -27496703 + L1M1 LINE L1 3513 3602 -3963 971 255 21 74 chr11 121286787 121287261 -27496211 + L1M1 LINE L1 5047 5495 -2070 1531 152 28 4 chr11 121287278 121287528 -27495944 + AluJo SINE Alu 13 268 -44 246 274 0 0 chr11 121287648 121287699 -27495773 - L2 LINE L2 -38 3275 3225 469 294 50 12 chr11 121288293 121288453 -27495019 + MIR SINE MIR 2 167 -95 209 280 27 27 chr11 121289043 121289118 -27494354 - MIR SINE MIR -117 145 71 292 291 0 23 chr11 121289569 121289655 -27493817 - MER5A DNA MER1_type -24 165 82 387 0 0 0 chr11 121289665 121289708 -27493764 + (TTGG)n Simple_repeat Simple_repeat 2 44 0 874 265 98 4 chr11 121291310 121291544 -27491928 - MIR SINE MIR -6 256 1 306 106 0 0 chr11 121291592 121291639 -27491833 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 380 274 17 34 chr11 121291640 121291757 -27491715 - L2 LINE L2 -14 3299 3185 281 337 65 43 chr11 121293102 121293286 -27490186 - L2 LINE L2 -556 2758 2571 253 171 0 0 chr11 121293364 121293405 -27490067 + L2 LINE L2 3272 3312 -1 470 285 24 0 chr11 121293415 121293538 -27489934 - MIR3 SINE MIR -48 160 35 843 484 0 3 chr11 121293549 121293857 -27489615 - AluSx SINE Alu 0 312 6 2189 89 0 0 chr11 121293857 121294139 -27489333 - AluY SINE Alu -29 282 1 700 193 7 2 chr11 121294142 121294292 -27489180 - MER5A DNA MER1_type -1 188 3 383 242 28 42 chr11 121294415 121294613 -27488859 + MIR SINE MIR 1 262 0 542 319 46 17 chr11 121295532 121295770 -27487702 + MIR SINE MIR 6 250 -12 2235 129 33 33 chr11 121295926 121296290 -27487182 + THE1B LTR MaLR 1 364 0 574 308 55 77 chr11 121298814 121299429 -27484043 + L2 LINE L2 2625 3228 -44 578 164 217 66 chr11 121300019 121300112 -27483360 - MER5A DNA MER1_type 0 189 111 1523 70 0 5 chr11 121300112 121300312 -27483160 - AluY SINE Alu -8 303 105 578 164 217 66 chr11 121300312 121300370 -27483102 - MER5A DNA MER1_type -78 111 15 220 338 0 14 chr11 121300476 121300550 -27482922 + MER5B DNA MER1_type 103 175 -3 522 271 71 0 chr11 121301778 121301918 -27481554 + MIR3 SINE MIR 58 207 -1 312 215 76 13 chr11 121302281 121302360 -27481112 + MLT1F1 LTR MaLR 41 124 -443 2635 199 25 19 chr11 121302361 121302855 -27480617 + L1MD3 LINE L1 7403 7903 -92 2271 72 10 0 chr11 121302855 121303159 -27480313 + AluY SINE Alu 1 307 -4 2635 199 25 19 chr11 121303159 121303253 -27480219 + L1MD3 LINE L1 7903 7995 0 259 241 276 0 chr11 121303423 121303510 -27479962 + L2 LINE L2 3149 3259 -13 213 39 0 0 chr11 121303510 121303536 -27479936 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 29 28 0 0 chr11 121303612 121303648 -27479824 + AT_rich Low_complexity Low_complexity 1 36 0 2476 102 23 6 chr11 121303649 121303992 -27479480 + THE1B LTR MaLR 1 349 -15 548 227 17 17 chr11 121304142 121304261 -27479211 + L2 LINE L2 3195 3313 0 234 0 0 0 chr11 121304510 121304536 -27478936 + (TAA)n Simple_repeat Simple_repeat 1 26 0 264 233 0 0 chr11 121305418 121305491 -27477981 + (ATGGTG)n Simple_repeat Simple_repeat 1 73 0 349 273 88 62 chr11 121305521 121305630 -27477842 - MIR SINE MIR -2 260 142 2376 96 76 17 chr11 121305630 121305974 -27477498 + THE1B LTR MaLR 1 364 0 349 273 88 62 chr11 121305974 121306058 -27477414 - MIR SINE MIR -120 142 62 234 347 33 67 chr11 121306546 121306696 -27476776 + L2 LINE L2 3115 3259 -13 2285 93 6 0 chr11 121306775 121307086 -27476386 + AluSq SINE Alu 1 313 0 189 0 0 0 chr11 121307283 121307304 -27476168 + (G)n Simple_repeat Simple_repeat 1 21 0 270 0 0 0 chr11 121307361 121307391 -27476081 + (A)n Simple_repeat Simple_repeat 1 30 0 1015 217 106 0 chr11 121307666 121307901 -27475571 + MIR SINE MIR 3 262 0 267 355 24 16 chr11 121307965 121308089 -27475383 - MIR SINE MIR -52 210 86 470 149 234 28 chr11 121308122 121308229 -27475243 - FLAM_A SINE Alu -8 134 6 203 252 189 47 chr11 121308722 121308849 -27474623 - L2 LINE L2 -7 3265 3121 811 233 79 9 chr11 121308857 121309072 -27474400 + MIR SINE MIR 33 262 0 208 125 42 42 chr11 121309134 121309230 -27474242 + (TA)n Simple_repeat Simple_repeat 1 96 0 2052 96 10 3 chr11 121309344 121309636 -27473836 + AluSx SINE Alu 1 294 -18 416 286 121 6 chr11 121309675 121309857 -27473615 - MIR SINE MIR -57 205 3 223 282 235 0 chr11 121310713 121310798 -27472674 - L2 LINE L2 0 3272 3168 2240 160 40 37 chr11 121311194 121311650 -27471822 + MSTB2 LTR MaLR 1 457 0 217 346 0 12 chr11 121311822 121311903 -27471569 - MIR SINE MIR -112 150 71 500 271 9 0 chr11 121312010 121312117 -27471355 + MIR SINE MIR 38 145 -63 838 162 0 7 chr11 121312172 121312308 -27471164 - AluJo SINE Alu -125 187 53 416 270 125 13 chr11 121312504 121312656 -27470816 + MIR3 SINE MIR 19 187 -21 * 2112 269 67 44 chr11 121312654 121313525 -27469947 + L2 LINE L2 2255 3144 -169 417 266 266 0 chr11 121313540 121313679 -27469793 - MER5A DNA MER1_type -7 182 7 410 256 18 92 chr11 121313694 121313858 -27469614 + L2 LINE L2 3158 3309 -4 961 255 0 0 chr11 121314511 121314711 -27468761 - MIR SINE MIR 0 262 63 520 191 214 0 chr11 121315209 121315358 -27468114 + MER5A DNA MER1_type 4 189 0 406 269 225 3 chr11 121315411 121315586 -27467886 - MIR SINE MIR -36 226 28 1634 177 7 16 chr11 121317714 121318019 -27465453 + AluJo SINE Alu 1 302 -10 309 155 0 0 chr11 121318245 121318303 -27465169 + CT-rich Low_complexity Low_complexity 2 59 0 449 316 130 5 chr11 121318604 121318819 -27464653 + MIR SINE MIR 21 262 0 200 246 116 14 chr11 121320179 121320248 -27463224 - MIR3 SINE MIR -4 204 129 * 358 297 54 18 chr11 121320224 121320335 -27463137 - L2 LINE L2 -3 3269 3155 210 178 44 0 chr11 121320470 121320515 -27462957 + L2 LINE L2 3133 3179 -93 2308 139 18 33 chr11 121320794 121321190 -27462282 - MLT1B LTR MaLR 0 390 1 865 272 116 42 chr11 121322676 121323230 -27460242 - L2 LINE L2 0 3313 2716 2051 110 0 3 chr11 121323588 121323879 -27459593 + AluSg1 SINE Alu 1 290 -19 200 200 100 0 chr11 121325689 121325739 -27457733 - MIR SINE MIR -114 148 94 1587 129 0 4 chr11 121326631 121326863 -27456609 + AluSq SINE Alu 1 231 -82 288 344 62 12 chr11 121327016 121327176 -27456296 - L2 LINE L2 -217 3055 2888 269 211 0 143 chr11 121327223 121327356 -27456116 - L2 LINE L2 -21 3251 3138 199 343 98 61 chr11 121327424 121327705 -27455767 - L2 LINE L2 -556 2758 2456 1792 164 3 0 chr11 121327705 121328009 -27455463 + AluJb SINE Alu 1 305 -7 199 343 98 61 chr11 121328009 121328135 -27455337 - L2 LINE L2 -858 2456 2336 637 196 64 95 chr11 121330970 121331150 -27452322 - L1MA8 LINE L1 0 6180 6006 506 193 44 44 chr11 121331173 121331308 -27452164 - LTR41 LTR ERVL -637 136 2 317 255 64 32 chr11 121331309 121331403 -27452069 - MIR SINE MIR -113 149 53 2900 115 8 29 chr11 121332032 121332632 -27450840 - MER4A LTR ERV1 0 664 7 519 250 43 9 chr11 121332684 121332800 -27450672 - MIR SINE MIR -127 135 16 880 239 54 22 chr11 121333227 121333449 -27450023 - MIR SINE MIR 0 262 34 187 282 0 0 chr11 121333712 121333751 -27449721 + MIR3 SINE MIR 144 182 -26 350 229 143 0 chr11 121334047 121334152 -27449320 - L2 LINE L2 -1 3312 3193 2103 123 3 0 chr11 121334317 121334619 -27448853 + AluSq SINE Alu 1 303 -10 912 140 0 0 chr11 121334811 121334947 -27448525 - FLAM_C SINE Alu -7 136 1 416 303 0 37 chr11 121335122 121335231 -27448241 - MIR3 SINE MIR -9 199 95 7116 52 12 2 chr11 121335231 121336504 -27446968 + L1PA6 LINE L1 4863 6143 -11 39 0 0 0 chr11 121336504 121336543 -27446929 + AT_rich Low_complexity Low_complexity 1 39 0 23 54 0 0 chr11 121336637 121336674 -27446798 + AT_rich Low_complexity Low_complexity 1 37 0 275 296 172 41 chr11 121337979 121338148 -27445324 - MIR SINE MIR -36 226 36 2141 106 0 31 chr11 121338290 121338611 -27444861 + AluSq SINE Alu 1 311 -2 185 296 97 117 chr11 121340384 121340631 -27442841 + L2 LINE L2 3030 3271 -1 1590 236 156 0 chr11 121341887 121342277 -27441195 - MLT1H1 LTR MaLR -6 549 99 2235 108 0 0 chr11 121343729 121344034 -27439438 + AluSx SINE Alu 1 305 -7 4409 154 70 84 chr11 121344056 121344174 -27439298 + L1MC3 LINE L1 6701 6819 -966 1903 126 11 3 chr11 121344174 121344459 -27439013 + AluSx SINE Alu 4 290 -22 315 0 0 0 chr11 121344464 121344499 -27438973 + (CA)n Simple_repeat Simple_repeat 2 36 0 4409 154 70 84 chr11 121344499 121344551 -27438921 + L1MC3 LINE L1 6823 6874 -911 216 0 0 0 chr11 121344551 121344575 -27438897 + (CAA)n Simple_repeat Simple_repeat 2 25 0 4409 154 70 84 chr11 121344575 121344863 -27438609 + L1MC3 LINE L1 6874 7165 -620 273 258 0 0 chr11 121344863 121344925 -27438547 + MLT1F1 LTR MaLR 64 125 -442 4409 154 70 84 chr11 121344925 121345498 -27437974 + L1MC3 LINE L1 7165 7785 0 263 111 0 19 chr11 121346135 121346189 -27437283 + (TG)n Simple_repeat Simple_repeat 1 53 0 350 145 0 14 chr11 121346204 121346273 -27437199 + (GGGGA)n Simple_repeat Simple_repeat 4 71 0 1939 68 4 8 chr11 121346320 121346585 -27436887 + L1MA1 LINE L1 5915 6178 -124 316 43 0 0 chr11 121346619 121346666 -27436806 + L1MA3 LINE L1 6259 6305 0 477 223 74 0 chr11 121347097 121347218 -27436254 + MIR3 SINE MIR 50 179 -29 448 304 0 9 chr11 121347726 121347838 -27435634 + MIR3 SINE MIR 83 193 -15 489 351 6 12 chr11 121348145 121348313 -27435159 + MIR SINE MIR 22 188 -74 389 190 203 86 chr11 121348348 121348482 -27434990 + MER5A DNA MER1_type 4 148 -30 279 0 0 0 chr11 121348577 121348608 -27434864 + (CA)n Simple_repeat Simple_repeat 2 32 0 640 215 15 0 chr11 121348800 121348935 -27434537 + MER33 DNA MER1_type 1 137 -187 289 343 30 10 chr11 121349258 121349357 -27434115 + MIR3 SINE MIR 105 205 -3 834 137 143 0 chr11 121350746 121350907 -27432565 - MER53 DNA DNA 0 189 6 2274 81 7 0 chr11 121353436 121353731 -27429741 + AluSp SINE Alu 1 297 -16 191 310 17 0 chr11 121354775 121354833 -27428639 - L2 LINE L2 -214 3058 3000 207 315 34 34 chr11 121355655 121355744 -27427728 - L2 LINE L2 -4 3268 3180 203 356 86 58 chr11 121355888 121356062 -27427410 + MER5A DNA MER1_type 9 187 -2 * 532 235 0 0 chr11 121355972 121356070 -27427402 - MER5A DNA MER1_type -83 106 9 203 86 0 29 chr11 121359634 121359669 -27423803 + (CCCCCT)n Simple_repeat Simple_repeat 3 36 0 243 236 149 49 chr11 121360443 121360586 -27422886 - MIR SINE MIR -63 145 2 405 254 30 125 chr11 121360759 121360893 -27422579 + MIR SINE MIR 38 142 -120 2062 126 7 0 chr11 121360893 121361186 -27422286 + AluSx SINE Alu 1 295 -17 405 254 30 125 chr11 121361186 121361283 -27422189 + MIR SINE MIR 142 247 -15 219 69 0 0 chr11 121362324 121362353 -27421119 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 184 264 94 0 chr11 121362354 121362407 -27421065 - L2 LINE L2 -14 3299 3242 370 273 10 0 chr11 121362955 121363054 -27420418 - L2 LINE L2 -608 2706 2607 1622 112 32 0 chr11 121363410 121363660 -27419812 + AluSq SINE Alu 39 296 -17 2061 192 68 75 chr11 121365566 121365941 -27417531 - MLT1F1 LTR MaLR 0 567 171 2113 100 0 7 chr11 121365941 121366232 -27417240 - AluSx SINE Alu -23 289 1 2061 192 68 75 chr11 121366232 121366402 -27417070 - MLT1F1 LTR MaLR -396 171 1 217 218 0 36 chr11 121366944 121366999 -27416473 + A-rich Low_complexity Low_complexity 5 57 0 528 180 8 66 chr11 121367230 121367352 -27416120 + MER58 DNA MER1_type 10 124 -2296 864 266 26 13 chr11 121367356 121367585 -27415887 - MIR SINE MIR -14 248 17 238 91 0 0 chr11 121367748 121367781 -27415691 + MER58 DNA MER1_type 2144 2176 -244 * 443 161 0 49 chr11 121367773 121367854 -27415618 + MER58 DNA MER1_type 2342 2418 -2 324 287 128 11 chr11 121368006 121368191 -27415281 - MIR3 SINE MIR -56 206 2 322 250 136 0 chr11 121368305 121368393 -27415079 - MIR SINE MIR -4 258 159 302 67 22 0 chr11 121368526 121368571 -27414901 + (TGGA)n Simple_repeat Simple_repeat 2 47 0 751 235 39 10 chr11 121369038 121369242 -27414230 - MIR SINE MIR -17 245 36 253 279 48 48 chr11 121370117 121370221 -27413251 - MIR SINE MIR -36 226 123 767 267 86 5 chr11 121370247 121370457 -27413015 - MIR SINE MIR -32 230 4 399 283 145 6 chr11 121370659 121370825 -27412647 + MER5A DNA MER1_type 1 189 0 1444 188 45 7 chr11 121372030 121372318 -27411154 - AluJb SINE Alu -13 299 1 1891 129 0 39 chr11 121372569 121372878 -27410594 + AluJo SINE Alu 2 298 -14 22 56 0 0 chr11 121372901 121372937 -27410535 + AT_rich Low_complexity Low_complexity 1 36 0 322 273 142 40 chr11 121373033 121373209 -27410263 - MIR SINE MIR -46 216 23 3151 232 142 10 chr11 121373349 121374281 -27409191 + L2 LINE L2 1923 2977 -337 1079 186 35 10 chr11 121374286 121374485 -27408987 + MER20 DNA MER1_type 1 204 -15 803 247 120 14 chr11 121374498 121374789 -27408683 + L2 LINE L2 2991 3312 -1 512 263 42 84 chr11 121374859 121375072 -27408400 - MIR SINE MIR -1 261 58 257 122 162 27 chr11 121375581 121375655 -27407817 + L1ME LINE L1 5402 5485 -677 2457 244 98 14 chr11 121376121 121376952 -27406520 - L1ME3A LINE L1 -1 6169 5270 2404 120 19 25 chr11 121377676 121378042 -27405430 - THE1B LTR MaLR 0 364 1 225 0 0 0 chr11 121378069 121378094 -27405378 + (CA)n Simple_repeat Simple_repeat 2 26 0 9213 216 67 52 chr11 121379424 121381261 -27402211 + L1MD1 LINE L1 17 1824 -4716 740 161 0 39 chr11 121381261 121381391 -27402081 + FLAM_C SINE Alu 1 125 -18 9213 216 67 52 chr11 121381391 121384923 -27398549 + L1MD1 LINE L1 1824 5599 -941 572 167 46 0 chr11 121384927 121385035 -27398437 + L1MA2 LINE L1 16 128 -7437 14729 161 43 50 chr11 121385035 121388105 -27395367 + L1MA2 LINE L1 1843 4934 -2789 1644 160 7 11 chr11 121388105 121388386 -27395086 + AluJb SINE Alu 19 298 -14 14729 161 43 50 chr11 121388386 121388751 -27394721 + L1MA2 LINE L1 4934 5300 -2423 4016 82 11 2 chr11 121388751 121389297 -27394175 - L1PA10 LINE L1 -5 6163 5613 14729 161 43 50 chr11 121389297 121390797 -27392675 + L1MA2 LINE L1 5300 6809 -914 2109 121 10 0 chr11 121390797 121391095 -27392377 + AluSp SINE Alu 1 301 -12 14729 161 43 50 chr11 121391095 121391923 -27391549 + L1MA2 LINE L1 6809 7565 -158 2062 110 29 32 chr11 121391923 121392232 -27391240 + AluSq SINE Alu 1 308 -5 14729 161 43 50 chr11 121392232 121392390 -27391082 + L1MA2 LINE L1 7565 7723 0 4735 173 66 8 chr11 121392404 121393394 -27390078 + L1MD1 LINE L1 5591 6636 0 1935 125 47 3 chr11 121393399 121393696 -27389776 + AluJo SINE Alu 1 310 -2 293 311 40 60 chr11 121393985 121394136 -27389336 + MER117 DNA MER1_type 12 159 -38 213 376 26 0 chr11 121394683 121394800 -27388672 - L2 LINE L2 -203 3069 2950 1992 106 0 0 chr11 121394818 121395105 -27388367 + AluSx SINE Alu 22 308 0 197 359 19 9 chr11 121395242 121395348 -27388124 - L2 LINE L2 -654 2660 2554 845 118 8 8 chr11 121396578 121396705 -27386767 + FLAM_C SINE Alu 1 127 -16 232 321 62 12 chr11 121397567 121397648 -27385824 - MER5A DNA MER1_type -98 91 7 847 154 124 6 chr11 121397743 121397912 -27385560 + MER6B DNA MER2_type 3 191 -19 449 344 21 0 chr11 121398156 121398345 -27385127 + L1ME LINE L1 5478 5670 -451 348 193 259 22 chr11 121398540 121398675 -27384797 - MER112 DNA MER1_type 0 260 94 2340 102 0 0 chr11 121401793 121402097 -27381375 + AluSx SINE Alu 1 304 -8 465 308 8 15 chr11 121402098 121402228 -27381244 + MER5A DNA MER1_type 59 187 -2 1020 324 82 17 chr11 121402245 121402779 -27380693 - L3 LINE CR1 -80 1497 929 414 328 148 6 chr11 121402830 121403013 -27380459 + MIR SINE MIR 4 212 -50 1527 173 23 33 chr11 121403020 121403321 -27380151 + AluJo SINE Alu 1 298 -14 250 159 143 0 chr11 121403432 121403495 -27379977 + L1MA4 LINE L1 6020 6091 -209 1319 116 75 4 chr11 121403499 121403740 -27379732 + L1MA4 LINE L1 6032 6289 -11 203 156 0 44 chr11 121403798 121403843 -27379629 + (TTTAA)n Simple_repeat Simple_repeat 5 47 0 778 208 16 71 chr11 121403989 121404072 -27379400 - MER5B DNA MER1_type -4 174 88 884 120 0 30 chr11 121404072 121404205 -27379267 - FLAM_C SINE Alu -4 129 1 778 208 16 71 chr11 121404205 121404304 -27379168 - MER5B DNA MER1_type -90 88 2 227 333 117 33 chr11 121404941 121405061 -27378411 - L2 LINE L2 -3 3269 3140 225 401 76 17 chr11 121405084 121405321 -27378151 - L2 LINE L2 -816 2498 2248 5756 174 17 14 chr11 121406516 121408549 -27374923 + L1PB4 LINE L1 4104 6138 -18 216 154 0 0 chr11 121409292 121409344 -27374128 + T-rich Low_complexity Low_complexity 1 52 0 32 26 0 0 chr11 121410673 121410712 -27372760 + AT_rich Low_complexity Low_complexity 1 39 0 2181 114 0 19 chr11 121411341 121411657 -27371815 + AluSq SINE Alu 1 310 -3 2468 77 0 3 chr11 121411832 121412142 -27371330 - AluSc SINE Alu 0 309 1 220 247 25 49 chr11 121413689 121413770 -27369702 + L2 LINE L2 2978 3056 -216 22 70 0 0 chr11 121417246 121417289 -27366183 + AT_rich Low_complexity Low_complexity 1 43 0 1614 187 0 27 chr11 121417705 121418004 -27365468 + AluJo SINE Alu 1 291 -21 432 252 153 9 chr11 121418811 121418922 -27364550 - L2 LINE L2 -8 3264 3138 24 0 0 0 chr11 121418934 121418958 -27364514 + AT_rich Low_complexity Low_complexity 1 24 0 528 277 160 5 chr11 121419694 121419907 -27363565 - MIR SINE MIR -1 261 16 253 306 55 80 chr11 121420002 121420201 -27363271 + L2 LINE L2 2902 3095 -177 533 221 32 57 chr11 121420310 121420468 -27363004 + MIR SINE MIR 29 182 -80 210 227 0 0 chr11 121420589 121420633 -27362839 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 1323 196 60 0 chr11 121421881 121422116 -27361356 + Tigger7 DNA MER2_type 1 249 -2238 1299 110 30 0 chr11 121422115 121422315 -27361157 + Tigger7 DNA MER2_type 2252 2457 -30 * 334 345 0 35 chr11 121422315 121422489 -27360983 + L2 LINE L2 2837 3004 -268 392 119 0 34 chr11 121423222 121423281 -27360191 + MER66B LTR ERV1 288 344 -142 1061 220 29 65 chr11 121423975 121424120 -27359352 - MER82 DNA MER2_type -1 652 522 1778 90 37 4 chr11 121424120 121424365 -27359107 + AluSp SINE Alu 40 292 -21 1061 220 29 65 chr11 121424365 121424528 -27358944 - MER82 DNA MER2_type -131 522 355 1826 173 121 0 chr11 121424649 121425013 -27358459 - MER82 DNA MER2_type -245 408 1 353 315 79 90 chr11 121425033 121425531 -27357941 + L2 LINE L2 2785 3272 0 1862 159 0 29 chr11 121426302 121426611 -27356861 - AluJb SINE Alu -6 306 7 468 146 24 12 chr11 121427164 121427246 -27356226 - L2 LINE L2 -4 3268 3186 284 133 22 0 chr11 121427262 121427307 -27356165 - MER75 DNA T2_type 0 504 459 425 310 77 58 chr11 121427339 121427643 -27355829 - L2 LINE L2 -86 3186 2879 929 343 31 37 chr11 121427668 121428210 -27355262 - L2 LINE L2 -550 2764 2226 1526 171 3 70 chr11 121429482 121429798 -27353674 + AluJo SINE Alu 1 295 -17 21 0 0 0 chr11 121429917 121429938 -27353534 + AT_rich Low_complexity Low_complexity 1 21 0 184 293 0 0 chr11 121430159 121430200 -27353272 + L2 LINE L2 3163 3203 -69 229 155 0 35 chr11 121430255 121430313 -27353159 + (TG)n Simple_repeat Simple_repeat 1 56 0 582 292 31 45 chr11 121430320 121430574 -27352898 + MIR SINE MIR 17 261 -1 2323 85 3 0 chr11 121430814 121431107 -27352365 - AluSc SINE Alu -15 294 1 217 286 119 0 chr11 121431534 121431618 -27351854 - MIR SINE MIR -1 261 168 29 28 0 0 chr11 121431997 121432033 -27351439 + AT_rich Low_complexity Low_complexity 1 36 0 207 226 71 71 chr11 121432751 121432835 -27350637 - L2 LINE L2 0 3272 3189 333 214 57 79 chr11 121433396 121433536 -27349936 + L2 LINE L2 2924 3060 -212 2140 163 63 27 chr11 121433727 121434169 -27349303 + MLT1C LTR MaLR 1 458 -9 741 290 69 4 chr11 121434642 121434887 -27348585 + MIR SINE MIR 2 262 0 2257 99 7 0 chr11 121437109 121437401 -27346071 - AluSg SINE Alu -16 294 1 573 241 30 30 chr11 121439379 121439545 -27343927 - MLT1J LTR MaLR -345 166 1 260 190 80 109 chr11 121440023 121440160 -27343312 - MLT1H LTR MaLR 0 588 410 768 194 123 33 chr11 121440297 121440508 -27342964 - MLT1H LTR MaLR -317 232 3 252 287 139 30 chr11 121440658 121440860 -27342612 - MIR SINE MIR -28 234 11 814 130 15 8 chr11 121442631 121442762 -27340710 + AluSg/x SINE Alu 168 299 -10 292 178 10 99 chr11 121442803 121442904 -27340568 + L1MC4 LINE L1 7925 8016 -26 2188 98 3 7 chr11 121443258 121443553 -27339919 - AluSc SINE Alu -15 294 1 1929 60 0 0 chr11 121443947 121444179 -27339293 - AluY SINE Alu 0 311 80 447 231 15 69 chr11 121445036 121445166 -27338306 + MIR SINE MIR 20 142 -66 2881 219 46 69 chr11 121445340 121446149 -27337323 - MER21B LTR ERV1 -60 803 14 370 353 66 39 chr11 121446164 121446450 -27337022 + L2 LINE L2 2958 3251 -21 21 0 0 0 chr11 121446477 121446498 -27336974 + AT_rich Low_complexity Low_complexity 1 21 0 1521 84 39 5 chr11 121446498 121446701 -27336771 + L1PA8 LINE L1 5959 6168 -4 2072 100 0 7 chr11 121446753 121447022 -27336450 + AluSx SINE Alu 1 267 -45 1096 176 0 6 chr11 121447055 121447229 -27336243 + AluJb SINE Alu 132 306 -6 1977 116 16 16 chr11 121447229 121447539 -27335933 + AluSg SINE Alu 1 310 0 428 284 25 71 chr11 121448149 121448346 -27335126 - L2 LINE L2 -8 3305 3118 996 234 149 95 chr11 121448351 121448760 -27334712 + L1ME3A LINE L1 5506 5962 -208 1945 128 52 0 chr11 121448760 121449048 -27334424 + AluSp SINE Alu 1 303 -10 996 234 149 95 chr11 121449048 121449262 -27334210 + L1ME3A LINE L1 5962 6163 -7 2334 196 6 82 chr11 121449335 121449389 -27334083 - L1ME1 LINE L1 -5 6161 6105 2143 108 4 0 chr11 121449389 121449666 -27333806 + AluSq SINE Alu 1 278 -35 180 0 0 0 chr11 121449670 121449690 -27333782 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 2334 196 6 82 chr11 121449690 121450254 -27333218 - L1ME1 LINE L1 -64 6102 5585 845 290 36 7 chr11 121450260 121450539 -27332933 - L1ME4a LINE L1 -219 5902 5616 571 154 6 10 chr11 121450645 121450802 -27332670 + AluJb SINE Alu 85 302 -10 2368 68 0 14 chr11 121450813 121451109 -27332363 + AluY SINE Alu 11 302 -9 21 71 0 0 chr11 121451322 121451364 -27332108 + AT_rich Low_complexity Low_complexity 1 42 0 2016 148 83 0 chr11 121451465 121451802 -27331670 - MLT1A1 LTR MaLR 0 365 1 307 236 50 85 chr11 121451847 121452046 -27331426 + L1ME4a LINE L1 5928 6119 -2 22 0 0 0 chr11 121453088 121453110 -27330362 + AT_rich Low_complexity Low_complexity 1 22 0 3177 86 33 2 chr11 121454492 121454911 -27328561 + L1PA10 LINE L1 5723 6154 -14 234 235 0 0 chr11 121454956 121455007 -27328465 - L2 LINE L2 0 3313 3263 222 118 0 0 chr11 121455362 121455396 -27328076 + (CATA)n Simple_repeat Simple_repeat 3 36 0 556 273 54 54 chr11 121455898 121456140 -27327332 - MIR SINE MIR -10 252 11 656 267 27 27 chr11 121456144 121456331 -27327141 + MER5A DNA MER1_type 3 189 0 30 27 0 0 chr11 121458293 121458330 -27325142 + AT_rich Low_complexity Low_complexity 1 37 0 2293 106 0 7 chr11 121458340 121458642 -27324830 + AluSx SINE Alu 1 300 -12 346 335 73 56 chr11 121458939 121459118 -27324354 + L2 LINE L2 3089 3270 -2 1591 166 20 40 chr11 121459121 121459417 -27324055 + AluJb SINE Alu 1 290 -22 185 347 14 28 chr11 121460323 121460395 -27323077 - L2 LINE L2 -199 3073 3003 1921 138 3 0 chr11 121460607 121460909 -27322563 - AluJb SINE Alu 0 303 1 2192 92 3 11 chr11 121461283 121461646 -27321826 - AluSg SINE Alu 0 361 1 1948 164 7 0 chr11 121461681 121461986 -27321486 + AluJb SINE Alu 1 307 -5 613 274 184 21 chr11 121462983 121463315 -27320157 - MLT1L LTR MaLR -16 599 214 216 0 0 0 chr11 121464060 121464084 -27319388 + (T)n Simple_repeat Simple_repeat 1 24 0 735 206 8 8 chr11 121464086 121464217 -27319255 - FLAM_A SINE Alu -2 131 1 247 261 72 27 chr11 121464762 121464823 -27318649 - MER103 DNA DNA -34 132 75 2733 102 14 6 chr11 121464823 121465184 -27318288 - THE1B LTR MaLR 0 364 1 247 261 72 27 chr11 121465184 121465233 -27318239 - MER103 DNA DNA -91 75 17 614 236 59 25 chr11 121465480 121465683 -27317789 - L2 LINE L2 0 3313 3104 804 175 0 0 chr11 121465686 121465812 -27317660 + AluJo/FLAM SINE Alu 1 126 -186 1969 146 3 3 chr11 121465814 121466116 -27317356 + AluJb SINE Alu 1 302 -10 991 300 117 25 chr11 121466126 121466170 -27317302 - L2 LINE L2 -164 3149 3110 2085 138 3 3 chr11 121466170 121466467 -27317005 + AluJb SINE Alu 1 297 -15 991 300 117 25 chr11 121466467 121467012 -27316460 - L2 LINE L2 -203 3110 2503 622 279 140 7 chr11 121467013 121467238 -27316234 - MIR SINE MIR -28 234 1 2126 97 24 0 chr11 121467560 121467848 -27315624 + AluSx SINE Alu 1 295 -17 620 131 0 98 chr11 121468454 121468576 -27314896 + AluJb SINE Alu 72 181 -131 786 118 9 0 chr11 121468645 121468755 -27314717 + AluJb SINE Alu 199 309 -3 2307 112 0 6 chr11 121468761 121469075 -27314397 + AluSp SINE Alu 1 312 -1 1675 121 76 0 chr11 121470150 121470440 -27313032 - AluSx SINE Alu 0 312 29 180 0 0 0 chr11 121470708 121470728 -27312744 + (T)n Simple_repeat Simple_repeat 1 20 0 2235 115 0 0 chr11 121471176 121471480 -27311992 - AluSx SINE Alu -8 304 1 8187 195 40 60 chr11 121471548 121471749 -27311723 - L1 LINE L1 -940 5206 5002 2141 105 11 0 chr11 121471749 121472035 -27311437 + AluSq SINE Alu 1 289 -24 8187 195 40 60 chr11 121472035 121472809 -27310663 - L1 LINE L1 -1144 5002 4214 342 0 0 0 chr11 121472809 121472847 -27310625 + (TG)n Simple_repeat Simple_repeat 2 39 0 8187 195 40 60 chr11 121472847 121473093 -27310379 - L1 LINE L1 -1932 4214 3964 1852 153 40 0 chr11 121473093 121473393 -27310079 - AluJb SINE Alu 0 312 1 8187 195 40 60 chr11 121473393 121474400 -27309072 - L1 LINE L1 -2182 3964 3022 3986 170 31 19 chr11 121474400 121474754 -27308718 + MER6 DNA MER2_type 1 349 -516 207 0 0 0 chr11 121474754 121474777 -27308695 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 3986 170 31 19 chr11 121474777 121475043 -27308429 + MER6 DNA MER2_type 349 632 -233 2278 101 7 0 chr11 121475043 121475340 -27308132 - AluSq SINE Alu -14 299 1 3986 170 31 19 chr11 121475340 121475402 -27308070 + MER6 DNA MER2_type 632 692 -173 6672 120 32 28 chr11 121475402 121475857 -27307615 + L1MA2 LINE L1 4711 5163 -1141 2353 72 7 16 chr11 121475857 121476161 -27307311 + AluSp SINE Alu 1 301 -12 6672 120 32 28 chr11 121476161 121477124 -27306348 + L1MA2 LINE L1 5163 6120 -184 2070 108 4 0 chr11 121477124 121477403 -27306069 - AluSx SINE Alu -32 280 1 6672 120 32 28 chr11 121477403 121477548 -27305924 + L1MA2 LINE L1 6120 6278 -26 327 25 0 0 chr11 121477548 121477588 -27305884 + (TA)n Simple_repeat Simple_repeat 2 41 0 6672 120 32 28 chr11 121477588 121477616 -27305856 + L1MA2 LINE L1 6278 6304 0 648 128 128 128 chr11 121477620 121477807 -27305665 + MER6 DNA MER2_type 679 865 0 335 219 12 0 chr11 121477807 121477889 -27305583 - L1 LINE L1 -3123 3023 2941 2027 153 7 0 chr11 121477890 121478198 -27305274 - AluSx SINE Alu -2 310 1 1479 182 126 4 chr11 121478249 121478518 -27304954 - AluJb SINE Alu 0 302 1 183 80 0 0 chr11 121478677 121478702 -27304770 + (A)n Simple_repeat Simple_repeat 1 25 0 1922 185 20 60 chr11 121478702 121478929 -27304543 + L1MB4 LINE L1 5386 5620 -563 2038 158 3 0 chr11 121478929 121479240 -27304232 + AluSx SINE Alu 1 312 0 1922 185 20 60 chr11 121479240 121479446 -27304026 + L1MB4 LINE L1 5620 5803 -380 2246 108 0 0 chr11 121479446 121479742 -27303730 - AluSc SINE Alu -13 296 1 1922 185 20 60 chr11 121479742 121479761 -27303711 + L1MB4 LINE L1 5803 5821 -362 1330 176 33 8 chr11 121479761 121480006 -27303466 + AluJo SINE Alu 42 292 -20 1846 131 0 74 chr11 121480010 121480347 -27303125 + L1MB4 LINE L1 5831 6142 -38 818 184 0 29 chr11 121480347 121480483 -27302989 + AluSq/x SINE Alu 2 133 -180 243 133 0 0 chr11 121480508 121480553 -27302919 + LTR66 LTR ERVL 395 439 -171 2157 117 7 0 chr11 121480570 121480861 -27302611 - AluSx SINE Alu -19 293 1 611 248 85 81 chr11 121481022 121481514 -27301958 + L1M4 LINE L1 4567 5060 -1086 709 260 86 66 chr11 121481613 121481917 -27301555 + MER110 LTR ERV1 182 491 0 897 127 16 0 chr11 121481959 121482085 -27301387 - FLAM_C SINE Alu -5 128 1 2441 99 0 0 chr11 121482101 121482414 -27301058 - AluSq SINE Alu 0 313 1 432 234 125 33 chr11 121482415 121482599 -27300873 + L1MC5 LINE L1 7725 7925 -36 2418 101 0 0 chr11 121482787 121483093 -27300379 - AluSx SINE Alu -6 306 1 2236 114 0 10 chr11 121483671 121483977 -27299495 - AluSx SINE Alu -9 303 1 243 300 11 33 chr11 121483983 121484073 -27299399 - L2 LINE L2 0 3313 3226 216 343 96 0 chr11 121485450 121485523 -27297949 + L2 LINE L2 3128 3207 -65 688 351 96 11 chr11 121486085 121486441 -27297031 + L2 LINE L2 2415 2800 -514 935 116 136 72 chr11 121486443 121486471 -27297001 + L1PA16 LINE L1 5890 5915 -251 3694 104 65 2 chr11 121486471 121486992 -27296480 - MER41A LTR ERV1 0 554 1 935 116 136 72 chr11 121486992 121487213 -27296259 + L1PA16 LINE L1 5915 6155 -11 472 314 172 25 chr11 121487224 121487657 -27295815 + L2 LINE L2 2792 3268 -4 403 241 13 0 chr11 121488982 121489061 -27294411 + MIR SINE MIR 5 84 -178 2137 71 4 18 chr11 121489063 121489344 -27294128 - AluY SINE Alu 0 311 35 180 0 0 0 chr11 121489473 121489493 -27293979 + (A)n Simple_repeat Simple_repeat 1 20 0 2273 74 0 39 chr11 121492226 121492538 -27290934 - AluY SINE Alu -11 300 1 223 346 0 37 chr11 121492912 121492993 -27290479 - MIR SINE MIR -115 93 16 736 229 129 73 chr11 121493230 121493532 -27289940 - L2 LINE L2 -639 2675 2357 224 377 24 18 chr11 121493793 121493960 -27289512 - L2 LINE L2 -424 2890 2723 1923 157 26 3 chr11 121494124 121494429 -27289043 + AluSx SINE Alu 1 312 0 182 292 111 0 chr11 121494569 121494641 -27288831 - L3 LINE CR1 -888 689 610 209 290 16 16 chr11 121494779 121494841 -27288631 + MIR SINE MIR 21 82 -180 185 283 0 33 chr11 121494871 121494931 -27288541 + MIR SINE MIR 166 223 -39 304 274 154 43 chr11 121495538 121495772 -27287700 - L1M2 LINE L1 -5595 1254 995 573 141 0 12 chr11 121496356 121496441 -27287031 + FLAM_A SINE Alu 38 121 -21 198 0 0 0 chr11 121496602 121496624 -27286848 + (T)n Simple_repeat Simple_repeat 1 22 0 2058 107 0 0 chr11 121496912 121497183 -27286289 + AluSx SINE Alu 18 288 -24 738 155 9 0 chr11 121497184 121497300 -27286172 - AluJo/FLAM SINE Alu -185 117 1 458 264 44 44 chr11 121497404 121497654 -27285818 - HAL1 LINE L1 0 2507 2258 1524 189 0 4 chr11 121497904 121498168 -27285304 - AluJo SINE Alu -49 263 1 422 298 84 22 chr11 121498534 121498712 -27284760 - L2 LINE L2 0 3313 3125 1141 146 52 41 chr11 121498794 121499061 -27284411 - L1MDa LINE L1 -4828 1712 1443 534 182 0 122 chr11 121499059 121499207 -27284265 + L1MDa LINE L1 892 1021 -5519 * 583 138 0 0 chr11 121499252 121499346 -27284126 + L1MDa LINE L1 1019 1112 -5428 1138 196 78 9 chr11 121499347 121499679 -27283793 - L1MDa LINE L1 -5091 1449 1095 273 295 31 47 chr11 121499681 121499810 -27283662 - L2 LINE L2 -496 2818 2692 2098 109 3 7 chr11 121499878 121500195 -27283277 - AluSx SINE Alu 0 316 1 230 273 52 0 chr11 121500292 121500369 -27283103 + L2 LINE L2 2304 2384 -930 326 198 99 36 chr11 121500452 121500563 -27282909 - LTR50 LTR ERVL -677 118 1 2327 86 3 7 chr11 121500693 121500994 -27282478 - AluSx SINE Alu -12 300 1 30 59 0 0 chr11 121501090 121501141 -27282331 + AT_rich Low_complexity Low_complexity 1 51 0 405 293 124 38 chr11 121501397 121501687 -27281785 - L1ME4a LINE L1 -287 5834 5520 2368 107 3 0 chr11 121501930 121502239 -27281233 + AluSp SINE Alu 1 310 -3 715 30 10 20 chr11 121502863 121502962 -27280510 - L1PB2 LINE L1 -2 6149 6052 1164 262 56 82 chr11 121503557 121503623 -27279849 + L1MEd LINE L1 487 553 -5757 206 81 27 0 chr11 121503623 121503660 -27279812 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 1736 123 52 0 chr11 121503665 121503917 -27279555 - AluY SINE Alu -46 265 1 1164 262 56 82 chr11 121503917 121504473 -27278999 + L1MEd LINE L1 557 1133 -5177 2100 147 13 0 chr11 121504473 121504780 -27278692 + AluSx SINE Alu 1 311 -1 1164 262 56 82 chr11 121504780 121505219 -27278253 + L1MEd LINE L1 1133 1582 -4728 233 277 15 0 chr11 121505219 121505243 -27278229 + GA-rich Low_complexity Low_complexity 5 27 -43 1454 141 29 80 chr11 121505243 121505519 -27277953 + AluJo SINE Alu 21 282 -30 233 277 15 0 chr11 121505519 121505559 -27277913 + GA-rich Low_complexity Low_complexity 27 70 0 675 243 101 0 chr11 121505881 121506070 -27277402 - MIR SINE MIR -2 260 53 324 352 43 25 chr11 121506618 121506780 -27276692 - MIR SINE MIR -51 211 47 2253 105 0 10 chr11 121507472 121507785 -27275687 - AluSg SINE Alu 0 310 1 1597 205 3 20 chr11 121507787 121508084 -27275388 - AluJo SINE Alu -20 292 1 2173 101 11 0 chr11 121508772 121509059 -27274413 + AluSg SINE Alu 1 290 -20 386 309 105 12 chr11 121509581 121509743 -27273729 - MIR SINE MIR 0 262 86 2351 99 3 3 chr11 121509869 121510182 -27273290 - AluSp SINE Alu 0 313 1 254 264 16 64 chr11 121510442 121510567 -27272905 - L1ME4a LINE L1 -104 6017 5899 21 36 0 0 chr11 121510579 121510607 -27272865 + AT_rich Low_complexity Low_complexity 1 28 0 252 0 0 0 chr11 121510866 121510894 -27272578 + (A)n Simple_repeat Simple_repeat 1 28 0 316 231 13 0 chr11 121512056 121512134 -27271338 + L1MEc LINE L1 36 114 -6282 789 295 98 60 chr11 121512138 121512903 -27270569 + L1MEc LINE L1 189 982 -5414 2640 236 87 98 chr11 121513059 121513853 -27269619 + HAL1 LINE L1 189 990 -1517 2125 127 0 13 chr11 121513853 121514160 -27269312 + AluSx SINE Alu 1 303 -9 2640 236 87 98 chr11 121514160 121514198 -27269274 + HAL1 LINE L1 990 1027 -1480 497 78 0 0 chr11 121514198 121514262 -27269210 + L1PA10 LINE L1 6088 6151 -17 2640 236 87 98 chr11 121514262 121514964 -27268508 + HAL1 LINE L1 1027 1707 -800 555 304 92 17 chr11 121514967 121515207 -27268265 + L2 LINE L2 3038 3295 -18 2360 106 0 0 chr11 121515820 121516123 -27267349 - AluSg SINE Alu -7 303 1 2183 123 3 0 chr11 121516899 121517199 -27266273 - AluSx SINE Alu -11 301 1 424 280 80 25 chr11 121517216 121517408 -27266064 - MIR SINE MIR -7 255 58 21 0 0 0 chr11 121517420 121517441 -27266031 + AT_rich Low_complexity Low_complexity 1 21 0 1737 183 3 28 chr11 121517479 121517796 -27265676 - AluJo SINE Alu -3 309 1 393 129 0 0 chr11 121517995 121518057 -27265415 + MER1B DNA MER1_type 2 63 -274 1072 126 37 37 chr11 121518063 121518253 -27265219 + MER1B DNA MER1_type 148 337 -2 191 333 77 26 chr11 121518297 121518375 -27265097 + L2 LINE L2 3158 3239 -33 2060 111 0 0 chr11 121519611 121519938 -27263534 + AluSx SINE Alu 6 332 0 946 123 0 182 chr11 121520010 121520246 -27263226 - 7SK RNA RNA 0 193 1 380 259 48 27 chr11 121520333 121520480 -27262992 + MER5C DNA MER1_type 128 277 -47 347 262 185 38 chr11 121520659 121521190 -27262282 - L1MC5 LINE L1 -78 7883 7275 652 281 5 11 chr11 121521315 121521500 -27261972 - MER5A DNA MER1_type -3 186 3 637 264 31 19 chr11 121521513 121521774 -27261698 - L1MC5 LINE L1 -733 7228 6965 264 218 0 0 chr11 121521842 121521897 -27261575 + AluJb SINE Alu 73 127 -175 298 200 0 0 chr11 121522534 121522584 -27260888 + MIR SINE MIR 212 261 -1 21 57 0 0 chr11 121522805 121522840 -27260632 + AT_rich Low_complexity Low_complexity 1 35 0 2382 79 3 0 chr11 121523225 121523515 -27259957 - AluSg SINE Alu -19 291 1 21 71 0 0 chr11 121523742 121523784 -27259688 + AT_rich Low_complexity Low_complexity 1 42 0 299 330 36 9 chr11 121524323 121524435 -27259037 + MIR SINE MIR 26 140 -122 368 343 91 19 chr11 121525015 121525440 -27258032 - L2 LINE L2 -95 3218 2690 1883 120 29 63 chr11 121525629 121525945 -27257527 + AluSx SINE Alu 1 305 -7 4216 156 5 17 chr11 121526833 121527616 -27255856 + L1PA15 LINE L1 5392 6165 0 2220 110 0 10 chr11 121528308 121528608 -27254864 + AluSx SINE Alu 1 297 -15 2410 87 7 0 chr11 121529255 121529565 -27253907 - AluSx SINE Alu 0 312 1 1139 210 24 17 chr11 121533156 121533451 -27250021 + L1MA4 LINE L1 6000 6296 -4 195 129 0 0 chr11 121533737 121533768 -27249704 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 743 148 0 0 chr11 121533798 121533906 -27249566 - FLAM_A SINE Alu -32 110 3 26 0 0 0 chr11 121533954 121533980 -27249492 + AT_rich Low_complexity Low_complexity 1 26 0 180 293 17 0 chr11 121534337 121534395 -27249077 + L2 LINE L2 2264 2322 -992 1124 292 57 6 chr11 121534407 121534756 -27248716 + L2 LINE L2 2448 2814 -500 489 218 58 29 chr11 121534934 121535108 -27248364 + L1MC4a LINE L1 5679 5857 -1951 246 32 0 0 chr11 121535147 121535178 -27248294 + (CA)n Simple_repeat Simple_repeat 1 31 0 254 295 80 9 chr11 121535223 121535335 -27248137 + L2 LINE L2 2938 3057 -215 2252 120 0 3 chr11 121535565 121535873 -27247599 + AluSx SINE Alu 1 307 -5 21 0 0 0 chr11 121535899 121535920 -27247552 + AT_rich Low_complexity Low_complexity 1 21 0 300 317 116 18 chr11 121536095 121536259 -27247213 + L1MC/D LINE L1 1073 1252 -4867 350 296 41 12 chr11 121536260 121536432 -27247040 + HAL1 LINE L1 1385 1561 -946 649 287 40 59 chr11 121536494 121536942 -27246530 + L1MC/D LINE L1 3794 4209 -1920 1570 153 10 61 chr11 121536942 121537237 -27246235 + AluJb SINE Alu 1 280 -32 649 287 40 59 chr11 121537237 121537320 -27246152 + L1MC/D LINE L1 4209 4292 -1837 1230 238 118 57 chr11 121537333 121537809 -27245663 - MLT1H1 LTR MaLR 0 595 1 595 266 74 78 chr11 121537869 121538070 -27245402 + L1MC/D LINE L1 5237 5437 -780 1305 161 43 5 chr11 121538070 121538281 -27245191 - MER20 DNA MER1_type 0 219 1 595 266 74 78 chr11 121538281 121538323 -27245149 + L1MC/D LINE L1 5437 5478 -739 2105 114 0 0 chr11 121538323 121538624 -27244848 - AluSx SINE Alu 0 309 9 595 266 74 78 chr11 121538624 121538827 -27244645 + L1MC/D LINE L1 5478 5697 -520 1079 215 54 8 chr11 121538864 121539108 -27244364 + L1M4 LINE L1 2653 2911 -3235 2434 78 3 3 chr11 121539108 121539414 -27244058 + AluY SINE Alu 2 307 -4 1079 215 54 8 chr11 121539414 121539430 -27244042 + L1M4 LINE L1 2911 2925 -3221 23 0 0 0 chr11 121539562 121539585 -27243887 + AT_rich Low_complexity Low_complexity 1 23 0 2376 72 0 19 chr11 121539694 121540001 -27243471 - AluSq SINE Alu -12 301 1 2179 111 7 0 chr11 121541159 121541456 -27242016 - AluSq SINE Alu -12 301 3 2277 103 0 3 chr11 121541931 121542231 -27241241 - AluSx SINE Alu -13 299 1 2920 72 21 5 chr11 121542807 121543181 -27240291 + L1PA10 LINE L1 5786 6165 -3 2333 115 0 0 chr11 121543304 121543616 -27239856 + AluSx SINE Alu 1 312 0 189 357 108 54 chr11 121543655 121543896 -27239576 - L2 LINE L2 -103 3169 2916 1660 103 36 0 chr11 121544041 121544264 -27239208 - AluSp SINE Alu -7 306 76 432 309 144 10 chr11 121544416 121544617 -27238855 - MIR SINE MIR -15 247 20 1091 149 0 0 chr11 121547336 121547497 -27235975 - AluJb SINE Alu -15 297 137 2165 100 7 7 chr11 121548351 121548642 -27234830 + AluSq SINE Alu 1 291 -22 386 286 132 17 chr11 121549180 121549467 -27234005 - L1MC4 LINE L1 -226 7816 7497 757 162 0 8 chr11 121549571 121549688 -27233784 + FLAM_A SINE Alu 1 116 -17 1941 161 0 7 chr11 121549931 121550229 -27233243 + AluJo SINE Alu 1 296 -16 2182 129 0 0 chr11 121550458 121550760 -27232712 + AluSx SINE Alu 1 302 -10 1655 159 68 25 chr11 121552537 121552858 -27230614 - L1MB8 LINE L1 0 6178 5844 27 0 0 0 chr11 121552867 121552894 -27230578 + AT_rich Low_complexity Low_complexity 1 27 0 2390 54 3 17 chr11 121553054 121553351 -27230121 - AluY SINE Alu -18 293 1 253 274 94 9 chr11 121553556 121553662 -27229810 - L1MB8 LINE L1 -439 5682 5568 21 0 0 0 chr11 121553969 121553990 -27229482 + AT_rich Low_complexity Low_complexity 1 21 0 1924 156 7 0 chr11 121556606 121556895 -27226577 + AluJo SINE Alu 1 291 -21 457 219 57 49 chr11 121558006 121558129 -27225343 + MIR SINE MIR 20 143 -119 557 122 12 0 chr11 121558948 121559030 -27224442 - MER30B DNA MER1_type 0 190 108 1569 198 48 7 chr11 121559598 121559891 -27223581 - AluJo SINE Alu -7 305 1 1606 173 36 23 chr11 121560086 121560392 -27223080 + AluJo SINE Alu 1 310 -2 261 272 136 19 chr11 121560890 121560993 -27222479 - MIR3 SINE MIR -7 201 87 1719 146 0 120 chr11 121561137 121561319 -27222153 - AluJo SINE Alu 0 302 178 2234 104 0 0 chr11 121561319 121561606 -27221866 + AluSx SINE Alu 6 292 -20 1719 146 0 120 chr11 121561606 121561765 -27221707 - AluJo SINE Alu -124 178 2 230 305 0 0 chr11 121561884 121561943 -27221529 + CT-rich Low_complexity Low_complexity 3 61 0 2000 123 7 20 chr11 121564454 121564747 -27218725 - AluSx SINE Alu -21 291 3 2198 108 3 3 chr11 121564771 121565068 -27218404 - AluSx SINE Alu -13 299 3 1697 115 100 0 chr11 121565194 121565454 -27218018 - AluSp SINE Alu -23 290 5 899 249 114 61 chr11 121565458 121565983 -27217489 + HAL1 LINE L1 848 1400 -1107 469 189 11 21 chr11 121566038 121566133 -27217339 + AluSg/x SINE Alu 201 294 -15 339 192 91 40 chr11 121566135 121566234 -27217238 + HAL1 LINE L1 2351 2454 -53 1726 175 10 16 chr11 121566239 121566548 -27216924 - AluJb SINE Alu -5 307 1 2033 83 3 63 chr11 121566551 121566886 -27216586 - AluSp SINE Alu 0 317 1 387 348 123 29 chr11 121566912 121567188 -27216284 - L2 LINE L2 -74 3198 2897 484 258 46 36 chr11 121568702 121568896 -27214576 + MER117 DNA MER1_type 1 196 -1 203 231 148 46 chr11 121569408 121569516 -27213956 - MIR3 SINE MIR -23 185 67 2332 102 0 3 chr11 121569607 121569912 -27213560 - AluSp SINE Alu -9 304 1 1917 168 7 3 chr11 121569914 121570223 -27213249 - AluJo SINE Alu -2 310 1 2055 145 0 3 chr11 121570223 121570527 -27212945 - AluJb SINE Alu -8 304 2 2395 75 3 0 chr11 121570719 121571011 -27212461 + AluY SINE Alu 1 293 -18 1456 184 75 20 chr11 121571525 121571705 -27211767 - AluJo SINE Alu -3 309 105 231 114 0 0 chr11 121571705 121571740 -27211732 + (TG)n Simple_repeat Simple_repeat 2 36 0 1456 184 75 20 chr11 121571740 121571852 -27211620 - AluJo SINE Alu -207 105 1 2067 181 28 33 chr11 121572028 121572426 -27211046 + MSTD LTR MaLR 1 396 0 291 229 0 0 chr11 121572529 121572577 -27210895 + MSTD LTR MaLR 247 294 -102 485 288 0 16 chr11 121572757 121572882 -27210590 - L2 LINE L2 0 3272 3150 200 303 40 0 chr11 121573745 121573821 -27209651 + CT-rich Low_complexity Low_complexity 3 81 0 503 356 66 41 chr11 121573832 121574152 -27209320 - L2 LINE L2 0 3272 2945 313 299 0 0 chr11 121574203 121574280 -27209192 + Tigger3(Golem) DNA MER2_type 1 77 -2952 * 946 155 7 0 chr11 121574278 121574420 -27209052 + Tigger3(Golem) DNA MER2_type 2896 3038 0 2370 85 3 7 chr11 121574574 121574879 -27208593 + AluSx SINE Alu 1 304 -8 1291 93 11 22 chr11 121574947 121575130 -27208342 + AluJb SINE Alu 49 229 -83 523 101 0 25 chr11 121575130 121575209 -27208263 - Alu SINE Alu -11 299 223 451 203 0 13 chr11 121575209 121575288 -27208184 + AluJb SINE Alu 217 294 -18 184 318 40 80 chr11 121575294 121575470 -27208002 + L2 LINE L2 2587 2755 -559 1688 193 3 13 chr11 121575793 121576098 -27207374 + AluJb SINE Alu 1 302 -10 1255 168 59 14 chr11 121576103 121576323 -27207149 + AluJo SINE Alu 1 230 -82 491 294 72 11 chr11 121576874 121577054 -27206418 - MIR SINE MIR -56 206 16 1292 158 9 27 chr11 121577231 121577452 -27206020 - AluJo SINE Alu -11 301 85 1825 252 104 49 chr11 121578190 121578622 -27204850 - L1ME3A LINE L1 -105 6065 5658 407 110 96 0 chr11 121578622 121578695 -27204777 - MER116 DNA Mariner 0 80 1 1825 252 104 49 chr11 121578695 121579101 -27204371 - L1ME3A LINE L1 -512 5658 5276 1622 143 0 0 chr11 121579101 121579332 -27204140 - AluJb SINE Alu -81 231 1 1825 252 104 49 chr11 121579332 121579717 -27203755 - L1ME3A LINE L1 -894 5276 4914 2193 121 3 0 chr11 121579717 121580014 -27203458 - AluSx SINE Alu -14 298 1 1825 252 104 49 chr11 121580014 121580070 -27203402 - L1ME3A LINE L1 -1256 4914 4863 1676 208 3 0 chr11 121580070 121580364 -27203108 - AluJo SINE Alu -17 295 1 1825 252 104 49 chr11 121580364 121580581 -27202891 - L1ME3A LINE L1 -1307 4863 4485 1508 203 42 78 chr11 121580637 121581071 -27202401 - L1MB7 LINE L1 -25 6159 5742 2392 103 0 0 chr11 121581088 121581389 -27202083 - AluSx SINE Alu -11 301 1 702 279 122 18 chr11 121581396 121581831 -27201641 - L1ME3A LINE L1 -1678 4468 3996 1798 178 11 0 chr11 121581890 121582176 -27201296 - AluJb SINE Alu -23 289 1 234 0 0 0 chr11 121583110 121583136 -27200336 + (TG)n Simple_repeat Simple_repeat 2 27 0 1929 115 37 4 chr11 121583137 121583407 -27200065 - AluSx SINE Alu -33 279 1 1379 175 103 0 chr11 121584579 121584842 -27198630 - AluJb SINE Alu -22 290 1 449 123 0 0 chr11 121584854 121584919 -27198553 - AluS SINE Alu -21 289 225 255 171 0 0 chr11 121584919 121584960 -27198512 - Alu SINE Alu -262 41 1 3683 242 109 42 chr11 121584961 121586482 -27196990 - L2 LINE L2 -10 3303 1693 1739 147 3 37 chr11 121586494 121586818 -27196654 + AluSx SINE Alu 1 312 0 5301 122 40 18 chr11 121586819 121587266 -27196206 - L1MC1 LINE L1 -149 6184 5748 1682 168 63 26 chr11 121587266 121587617 -27195855 - MLT1A1 LTR MaLR -1 364 1 5301 122 40 18 chr11 121587617 121588048 -27195424 - L1MC1 LINE L1 -585 5748 5287 893 207 0 11 chr11 121588048 121588227 -27195245 - AluJo SINE Alu -14 298 122 3304 187 15 51 chr11 121588227 121588500 -27194972 - L1MC1 LINE L1 -864 5282 5001 2041 139 0 3 chr11 121588500 121588803 -27194669 - AluSx SINE Alu -8 304 3 3304 187 15 51 chr11 121588803 121589129 -27194343 - L1MC1 LINE L1 -1145 5001 4715 2080 131 7 3 chr11 121589129 121589434 -27194038 - AluSx SINE Alu -5 307 2 3304 187 15 51 chr11 121589434 121589623 -27193849 - L1MC1 LINE L1 -1431 4715 4521 645 251 55 18 chr11 121589655 121589874 -27193598 - L2 LINE L2 -1852 1462 1236 1674 192 138 13 chr11 121589974 121590437 -27193035 - L1MB8 LINE L1 0 6178 5658 432 255 78 48 chr11 121590442 121590673 -27192799 - L2 LINE L2 -2214 1100 863 202 304 50 64 chr11 121591810 121592030 -27191442 - L2 LINE L2 -5 3308 3092 1735 98 0 0 chr11 121592146 121592371 -27191101 - AluSg/x SINE Alu 0 312 88 1355 216 110 17 chr11 121592783 121593273 -27190199 - MLT1G3 LTR MaLR 0 595 1 255 250 167 10 chr11 121595181 121595277 -27188195 - L2 LINE L2 -2 3311 3201 270 81 0 0 chr11 121595680 121595717 -27187755 + (TGGA)n Simple_repeat Simple_repeat 1 37 0 289 136 30 0 chr11 121595725 121595791 -27187681 + GA-rich Low_complexity Low_complexity 5 72 0 1497 181 27 33 chr11 121595795 121596094 -27187378 + AluJo SINE Alu 1 297 -15 2544 66 0 0 chr11 121596595 121596899 -27186573 - AluY SINE Alu -7 304 1 1872 172 7 0 chr11 121597097 121597394 -27186078 + AluJo SINE Alu 1 299 -13 201 94 0 0 chr11 121598009 121598041 -27185431 + (TCCA)n Simple_repeat Simple_repeat 1 32 0 629 298 68 32 chr11 121598048 121598281 -27185191 - L2 LINE L2 -21 3292 3069 2175 104 31 0 chr11 121598281 121598569 -27184903 - AluSx SINE Alu -15 297 1 629 298 68 32 chr11 121598569 121598839 -27184633 - L2 LINE L2 -244 3069 2767 381 240 172 26 chr11 121599467 121599841 -27183631 - L1MB8 LINE L1 -748 5398 5172 414 276 112 9 chr11 121599900 121600016 -27183456 - FLAM_A SINE Alu -3 130 3 1555 133 26 4 chr11 121600025 121600284 -27183188 - AluSx SINE Alu 0 309 46 408 147 40 0 chr11 121600471 121600546 -27182926 - Looper DNA T2_type -3 1555 1478 2041 113 46 0 chr11 121600546 121600828 -27182644 - AluSx SINE Alu -17 295 1 502 159 33 139 chr11 121602661 121602893 -27180579 - MIR SINE MIR -50 212 2 2345 97 0 0 chr11 121603241 121603540 -27179932 - AluSx SINE Alu -13 299 1 236 330 11 0 chr11 121603876 121603964 -27179508 - AluSp SINE Alu -186 117 29 216 0 0 0 chr11 121603993 121604017 -27179455 + (T)n Simple_repeat Simple_repeat 1 24 0 1997 160 0 16 chr11 121604027 121604340 -27179132 + AluJb SINE Alu 1 308 -4 2055 125 0 0 chr11 121604560 121604841 -27178631 + AluSx SINE Alu 19 299 -13 1070 83 0 0 chr11 121604997 121605130 -27178342 - AluY SINE Alu -178 133 1 788 270 52 4 chr11 121605398 121605631 -27177841 - MIR SINE MIR -18 244 1 1770 163 32 0 chr11 121605655 121605938 -27177534 - AluJb SINE Alu -15 297 6 1952 93 0 0 chr11 121606691 121606937 -27176535 - AluSx SINE Alu -66 246 1 1065 167 13 56 chr11 121607363 121607596 -27175876 - AluJo SINE Alu -4 308 86 489 291 54 14 chr11 121607770 121607918 -27175554 - MER5A DNA MER1_type 0 189 36 1923 143 17 10 chr11 121608456 121608750 -27174722 - AluJb SINE Alu -16 296 1 1523 149 0 20 chr11 121608757 121609006 -27174466 - AluJb SINE Alu -11 301 58 1076 169 96 0 chr11 121609186 121609216 -27174256 + AluJo SINE Alu 87 113 -199 513 47 0 0 chr11 121609216 121609280 -27174192 + (CA)n Simple_repeat Simple_repeat 1 64 0 1076 169 96 0 chr11 121609280 121609427 -27174045 + AluJo SINE Alu 113 281 -31 212 0 36 0 chr11 121609432 121609460 -27174012 + (CA)n Simple_repeat Simple_repeat 2 30 0 689 170 0 9 chr11 121609510 121609622 -27173850 - FLAM_A SINE Alu -22 120 10 453 90 0 0 chr11 121610317 121610384 -27173088 + (TTTA)n Simple_repeat Simple_repeat 3 69 0 189 0 0 0 chr11 121610417 121610438 -27173034 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1750 92 13 4 chr11 121610440 121610678 -27172794 - AluSx SINE Alu -30 282 43 202 61 0 122 chr11 121611689 121611738 -27171734 + (CGGGG)n Simple_repeat Simple_repeat 2 44 0 854 131 0 8 chr11 121613789 121613919 -27169553 + FLAM_A SINE Alu 4 132 -1 221 329 55 0 chr11 121614039 121614112 -27169360 - L2 LINE L2 -204 3068 2992 186 357 0 12 chr11 121614139 121614223 -27169249 + L2 LINE L2 2195 2277 -1037 198 0 0 0 chr11 121614262 121614284 -27169188 + (GA)n Simple_repeat Simple_repeat 2 23 0 850 290 78 12 chr11 121614319 121614654 -27168818 + L2 LINE L2 2305 2661 -653 905 283 93 11 chr11 121614837 121615212 -27168260 + L2 LINE L2 2858 3263 -50 1571 150 70 17 chr11 121615293 121615580 -27167892 + AluJo SINE Alu 1 302 -10 21 0 0 0 chr11 121615857 121615878 -27167594 + AT_rich Low_complexity Low_complexity 1 21 0 2150 106 3 7 chr11 121616160 121616453 -27167019 - AluSx SINE Alu -20 292 1 1052 170 6 12 chr11 121617464 121617635 -27165837 - AluJo SINE Alu -14 298 129 1343 170 5 0 chr11 121617648 121617854 -27165618 + AluJo SINE Alu 1 207 -105 675 173 8 16 chr11 121617874 121618001 -27165471 - AluJo SINE Alu -185 127 2 780 249 81 0 chr11 121618866 121619051 -27164421 - MIR SINE MIR -57 205 6 31 44 0 0 chr11 121619245 121619290 -27164182 + AT_rich Low_complexity Low_complexity 1 45 0 2292 88 0 17 chr11 121619499 121619821 -27163651 - AluSc SINE Alu 0 309 1 475 221 57 0 chr11 121619860 121620000 -27163472 - Charlie5 DNA MER1_type -27 2585 2438 392 239 161 35 chr11 121620032 121620262 -27163210 - L2 LINE L2 -701 2613 2355 2189 120 7 3 chr11 121620276 121620577 -27162895 - AluSq SINE Alu -11 302 1 2016 138 0 13 chr11 121620987 121621299 -27162173 - AluJb SINE Alu -3 309 2 2502 64 3 0 chr11 121621491 121621786 -27161686 + AluY SINE Alu 1 296 -15 1464 184 75 20 chr11 121622296 121622476 -27160996 - AluJo SINE Alu -3 309 105 270 81 0 0 chr11 121622476 121622513 -27160959 + (TG)n Simple_repeat Simple_repeat 2 38 0 1464 184 75 20 chr11 121622513 121622625 -27160847 - AluJo SINE Alu -207 105 1 1934 181 28 33 chr11 121622801 121623199 -27160273 + MSTD LTR MaLR 1 396 0 294 229 0 0 chr11 121623302 121623350 -27160122 + MSTD LTR MaLR 247 294 -102 443 288 0 16 chr11 121623530 121623655 -27159817 - L2 LINE L2 0 3272 3150 200 303 40 0 chr11 121624518 121624594 -27158878 + CT-rich Low_complexity Low_complexity 3 81 0 408 356 66 41 chr11 121624605 121624925 -27158547 - L2 LINE L2 0 3272 2945 314 299 0 0 chr11 121624976 121625053 -27158419 + Tigger3(Golem) DNA MER2_type 1 77 -2952 * 942 155 7 0 chr11 121625051 121625193 -27158279 + Tigger3(Golem) DNA MER2_type 2896 3038 0 2379 86 3 7 chr11 121625347 121625651 -27157821 + AluSx SINE Alu 1 303 -9 1305 93 11 22 chr11 121625719 121625902 -27157570 + AluJb SINE Alu 49 229 -83 512 101 0 0 chr11 121625902 121625981 -27157491 - Alu SINE Alu -9 302 224 424 203 0 13 chr11 121625981 121626060 -27157412 + AluJb SINE Alu 217 294 -18 1697 193 3 13 chr11 121626565 121626870 -27156602 + AluJb SINE Alu 1 302 -10 1265 168 59 14 chr11 121626875 121627095 -27156377 + AluJo SINE Alu 1 230 -82 437 305 72 0 chr11 121627646 121627813 -27155659 - MIR SINE MIR -56 206 28 1299 158 9 27 chr11 121628003 121628224 -27155248 - AluJo SINE Alu -11 301 85 1779 250 105 50 chr11 121628963 121629395 -27154077 - L1ME3A LINE L1 -105 6065 5658 387 110 96 0 chr11 121629395 121629468 -27154004 - MER116 DNA Mariner 0 80 1 1779 250 105 50 chr11 121629468 121629874 -27153598 - L1ME3A LINE L1 -512 5658 5276 1638 143 0 0 chr11 121629874 121630105 -27153367 - AluJb SINE Alu -81 231 1 1779 250 105 50 chr11 121630105 121630490 -27152982 - L1ME3A LINE L1 -894 5276 4914 2262 119 3 0 chr11 121630490 121630793 -27152679 - AluSx SINE Alu -8 304 1 1779 250 105 50 chr11 121630793 121630849 -27152623 - L1ME3A LINE L1 -1256 4914 4863 1705 205 3 0 chr11 121630849 121631142 -27152330 - AluJo SINE Alu -18 294 1 1779 250 105 50 chr11 121631142 121631359 -27152113 - L1ME3A LINE L1 -1307 4863 4485 1483 203 42 78 chr11 121631415 121631849 -27151623 - L1MB7 LINE L1 -25 6159 5742 2422 100 0 0 chr11 121631866 121632167 -27151305 - AluSx SINE Alu -11 301 1 674 279 122 18 chr11 121632174 121632609 -27150863 - L1ME3A LINE L1 -1678 4468 3996 1813 178 11 0 chr11 121632668 121632954 -27150518 - AluJb SINE Alu -23 289 1 198 0 0 0 chr11 121633888 121633910 -27149562 + (TG)n Simple_repeat Simple_repeat 2 23 0 1951 115 37 4 chr11 121633911 121634181 -27149291 - AluSx SINE Alu -33 279 1 1376 179 103 0 chr11 121635353 121635616 -27147856 - AluJb SINE Alu -22 290 1 434 159 196 19 chr11 121635627 121635734 -27147738 - FLAM_C SINE Alu -7 126 1 3310 240 109 41 chr11 121635735 121637256 -27146216 - L2 LINE L2 -10 3303 1693 1955 138 0 30 chr11 121637268 121637591 -27145881 + AluSx SINE Alu 1 312 0 5310 121 40 15 chr11 121637592 121638036 -27145436 - L1MC1 LINE L1 -149 6184 5753 1565 169 51 31 chr11 121638036 121638390 -27145082 - MLT1A1 LTR MaLR -4 361 1 5310 121 40 15 chr11 121638390 121638821 -27144651 - L1MC1 LINE L1 -580 5753 5287 958 202 0 6 chr11 121638821 121638999 -27144473 - AluJo SINE Alu -14 298 122 3403 189 13 48 chr11 121638999 121639272 -27144200 - L1MC1 LINE L1 -864 5282 5001 2240 116 0 0 chr11 121639272 121639575 -27143897 - AluSx SINE Alu -7 305 3 3403 189 13 48 chr11 121639575 121639901 -27143571 - L1MC1 LINE L1 -1145 5001 4715 2197 128 3 0 chr11 121639901 121640207 -27143265 - AluSx SINE Alu -4 308 2 3403 189 13 48 chr11 121640207 121640396 -27143076 - L1MC1 LINE L1 -1431 4715 4521 711 250 51 34 chr11 121640428 121640664 -27142808 - L2 LINE L2 -1852 1462 1223 1707 191 143 9 chr11 121640747 121641193 -27142279 - L1MB8 LINE L1 0 6178 5673 563 251 76 44 chr11 121641194 121641445 -27142027 - L2 LINE L2 -2193 1121 863 198 269 37 46 chr11 121641813 121641921 -27141551 + MIR SINE MIR 107 213 -49 381 293 49 49 chr11 121642582 121642807 -27140665 - L2 LINE L2 -5 3308 3084 2386 87 0 10 chr11 121642917 121643229 -27140243 - AluSc SINE Alu 0 309 1 2259 77 21 0 chr11 121643987 121644274 -27139198 + AluSc SINE Alu 1 293 -16 1402 170 0 0 chr11 121645197 121645420 -27138052 - AluJb SINE Alu -2 310 88 1350 238 139 32 chr11 121645832 121646322 -27137150 - MLT1G1 LTR MaLR 0 595 2 288 250 167 10 chr11 121648230 121648326 -27135146 - L2 LINE L2 -2 3311 3201 270 81 0 0 chr11 121648729 121648766 -27134706 + (TGGA)n Simple_repeat Simple_repeat 1 37 0 289 136 30 0 chr11 121648774 121648840 -27134632 + GA-rich Low_complexity Low_complexity 5 72 0 1518 177 27 33 chr11 121648844 121649143 -27134329 + AluJo SINE Alu 1 297 -15 2517 66 0 0 chr11 121649644 121649948 -27133524 - AluY SINE Alu -7 304 1 1855 172 7 0 chr11 121650146 121650443 -27133029 + AluJo SINE Alu 1 299 -13 201 94 0 0 chr11 121651058 121651090 -27132382 + (TCCA)n Simple_repeat Simple_repeat 1 32 0 754 281 95 61 chr11 121651090 121651330 -27132142 - L2 LINE L2 -15 3298 3068 2153 104 31 0 chr11 121651330 121651618 -27131854 - AluSx SINE Alu -15 297 1 754 281 95 61 chr11 121651618 121651888 -27131584 - L2 LINE L2 -245 3068 2767 395 240 172 26 chr11 121652516 121652890 -27130582 - L1MB8 LINE L1 -748 5398 5172 455 276 112 9 chr11 121652949 121653065 -27130407 - FLAM_A SINE Alu -3 130 3 1539 133 26 4 chr11 121653074 121653333 -27130139 - AluSx SINE Alu 0 309 46 678 121 14 100 chr11 121653520 121653595 -27129877 - Looper DNA T2_type -3 1555 1475 1944 95 81 0 chr11 121653595 121653868 -27129604 - AluSx SINE Alu -17 295 1 678 121 14 100 chr11 121653868 121653888 -27129584 - Looper DNA T2_type -83 1475 1455 1882 142 42 0 chr11 121653888 121654176 -27129296 + AluJo SINE Alu 1 300 -12 678 121 14 100 chr11 121654176 121654285 -27129187 - Looper DNA T2_type -103 1455 1338 905 122 0 43 chr11 121654285 121654424 -27129048 + FLAM_C SINE Alu 1 133 0 678 121 14 100 chr11 121654424 121654471 -27129001 - Looper DNA T2_type -220 1338 2 1669 162 7 33 chr11 121654663 121654966 -27128506 - AluJo SINE Alu -17 295 1 661 220 132 0 chr11 121655470 121655629 -27127843 + MIR SINE MIR 10 189 -73 47 0 0 41 chr11 121655630 121655671 -27127801 + AT_rich Low_complexity Low_complexity 1 42 -28 2409 67 0 7 chr11 121655671 121655969 -27127503 + AluY SINE Alu 2 297 -14 47 0 0 41 chr11 121655969 121655983 -27127489 + AT_rich Low_complexity Low_complexity 42 55 -15 2168 122 0 7 chr11 121655983 121656279 -27127193 - AluSx SINE Alu -18 294 1 47 0 0 41 chr11 121656279 121656295 -27127177 + AT_rich Low_complexity Low_complexity 55 70 0 555 159 33 139 chr11 121658113 121658345 -27125127 - MIR SINE MIR -50 212 2 2322 97 0 0 chr11 121658693 121658992 -27124480 - AluSx SINE Alu -13 299 1 21 0 0 0 chr11 121659488 121659509 -27123963 + AT_rich Low_complexity Low_complexity 1 21 0 2127 129 0 10 chr11 121659957 121660252 -27123220 - AluSg SINE Alu -18 292 1 2240 116 7 0 chr11 121661481 121661791 -27121681 + AluSq SINE Alu 1 312 -1 563 231 62 39 chr11 121661974 121662104 -27121368 - FLAM_A SINE Alu 0 133 1 2290 115 3 3 chr11 121662730 121663042 -27120430 + AluSx SINE Alu 1 312 0 797 147 0 59 chr11 121663777 121663913 -27119559 + FLAM_C SINE Alu 2 129 -14 357 224 36 128 chr11 121664248 121664313 -27119159 - MER5B DNA MER1_type 0 178 109 2477 83 3 0 chr11 121664313 121664625 -27118847 + AluSp SINE Alu 1 313 0 357 224 36 128 chr11 121664625 121664755 -27118717 - MER5B DNA MER1_type -69 109 1 2226 117 7 0 chr11 121666811 121667119 -27116353 - AluSx SINE Alu -2 310 1 196 30 61 0 chr11 121667228 121667261 -27116211 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 329 200 38 12 chr11 121667268 121667348 -27116124 - FRAM/FAM SINE Alu -81 85 4 803 224 70 23 chr11 121667348 121667562 -27115910 - MIR SINE MIR -23 239 16 856 100 0 0 chr11 121667706 121667816 -27115656 - FLAM_A SINE Alu -15 127 18 842 128 0 0 chr11 121668339 121668456 -27115016 + FLAM_C SINE Alu 1 117 -26 533 181 0 0 chr11 121668725 121668819 -27114653 + L1MD3 LINE L1 7730 7823 -172 289 176 0 0 chr11 121668971 121669022 -27114450 - L1MC4a LINE L1 -1875 5933 5883 2091 120 33 0 chr11 121669023 121669323 -27114149 - AluSp SINE Alu -3 310 1 216 0 0 0 chr11 121669333 121669357 -27114115 + (T)n Simple_repeat Simple_repeat 1 24 0 1989 159 0 16 chr11 121669367 121669681 -27113791 + AluJb SINE Alu 1 309 -3 465 115 0 0 chr11 121669901 121669962 -27113510 + AluS SINE Alu 19 79 -234 276 259 43 78 chr11 121670104 121670220 -27113252 - MIR SINE MIR -59 149 38 519 313 80 28 chr11 121670619 121670907 -27112565 - L2 LINE L2 -469 2845 2543 707 243 92 39 chr11 121672741 121672947 -27110525 + MIR SINE MIR 34 250 -12 196 310 140 10 chr11 121672999 121673099 -27110373 - L2 LINE L2 -512 2802 2690 25 0 0 0 chr11 121673748 121673773 -27109699 + AT_rich Low_complexity Low_complexity 1 25 0 3670 205 43 28 chr11 121674929 121675787 -27107685 - L1ME2 LINE L1 -9 6155 5285 478 278 249 14 chr11 121676024 121676233 -27107239 + MIR SINE MIR 5 262 0 653 221 15 110 chr11 121676567 121676684 -27106788 + HAL1 LINE L1 2270 2351 -156 1708 145 52 4 chr11 121676684 121676993 -27106479 + AluJb SINE Alu 1 322 0 653 221 15 110 chr11 121676993 121677137 -27106335 + HAL1 LINE L1 2351 2507 0 1912 135 87 0 chr11 121677832 121678144 -27105328 - MER44D DNA MER2_type 0 609 1 1542 219 267 77 chr11 121679555 121680847 -27102625 + L2 LINE L2 1705 3313 0 213 295 48 48 chr11 121680910 121681015 -27102457 - MIR SINE MIR -132 130 26 4927 261 89 13 chr11 121681284 121682854 -27100618 + L1MEc LINE L1 39 1727 -4669 2601 58 3 0 chr11 121682857 121683166 -27100306 + AluY SINE Alu 2 311 0 320 256 16 64 chr11 121683397 121683522 -27099950 - L1ME4a LINE L1 -104 6017 5899 347 233 132 79 chr11 121683551 121683656 -27099816 - L1ME4a LINE L1 -1991 5817 5719 2502 90 0 0 chr11 121683656 121683966 -27099506 - AluSg SINE Alu 0 310 1 347 233 132 79 chr11 121683966 121684049 -27099423 - L1ME4a LINE L1 -2089 5719 5619 434 344 248 5 chr11 121684203 121684642 -27098830 + L2 LINE L2 2213 2758 -556 833 209 11 22 chr11 121684661 121684843 -27098629 + MER58C DNA MER1_type 36 215 0 318 355 18 9 chr11 121685086 121685196 -27098276 - L2 LINE L2 -46 3226 3116 2342 95 3 7 chr11 121685392 121685698 -27097774 + AluSx SINE Alu 1 305 -7 1130 131 6 0 chr11 121685698 121685866 -27097606 + AluJb SINE Alu 134 302 -10 21 0 0 0 chr11 121686868 121686889 -27096583 + AT_rich Low_complexity Low_complexity 1 21 0 2364 90 0 0 chr11 121687002 121687302 -27096170 - AluSq SINE Alu -13 300 1 23 68 0 0 chr11 121687728 121687772 -27095700 + AT_rich Low_complexity Low_complexity 1 44 0 2360 87 0 6 chr11 121687897 121688208 -27095264 - AluY SINE Alu -2 309 1 2228 112 0 22 chr11 121688238 121688550 -27094922 + AluSx SINE Alu 1 305 -7 2032 149 0 0 chr11 121689918 121690213 -27093259 + AluJo SINE Alu 1 295 -17 1647 171 33 4 chr11 121690216 121690490 -27092982 + AluJb SINE Alu 1 282 -30 966 257 19 55 chr11 121691019 121691141 -27092331 - MIR SINE MIR 0 262 137 207 0 0 0 chr11 121691141 121691164 -27092308 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2107 69 44 0 chr11 121691166 121691441 -27092031 - AluY SINE Alu -24 287 1 966 257 19 55 chr11 121691441 121691572 -27091900 - MIR SINE MIR -126 136 15 2085 125 3 0 chr11 121692144 121692439 -27091033 - AluSq SINE Alu -17 296 1 1335 142 30 21 chr11 121692471 121692704 -27090768 - MER46A DNA MER2_type -1 235 1 24 32 0 0 chr11 121692771 121692802 -27090670 + AT_rich Low_complexity Low_complexity 1 31 0 2071 128 0 0 chr11 121692996 121693308 -27090164 + AluSx SINE Alu 1 312 0 216 308 205 0 chr11 121693565 121693643 -27089829 + L2 LINE L2 3157 3250 -22 629 188 34 0 chr11 121693643 121693760 -27089712 - FLAM_A SINE Alu -15 127 7 1821 117 14 18 chr11 121694550 121694859 -27088613 + AluSx SINE Alu 1 308 0 2112 96 10 3 chr11 121694990 121695281 -27088191 + AluSx SINE Alu 1 293 -19 25 31 0 0 chr11 121697336 121697368 -27086104 + AT_rich Low_complexity Low_complexity 1 32 0 3320 85 2 20 chr11 121697475 121697934 -27085538 - L1PA8 LINE L1 -3 6169 5719 2301 93 0 0 chr11 121698784 121699086 -27084386 + AluSx SINE Alu 2 303 -9 181 184 132 0 chr11 121700347 121700385 -27083087 + L2 LINE L2 3269 3311 -2 2041 115 0 44 chr11 121700943 121701264 -27082208 + AluSx SINE Alu 1 307 -5 1740 100 0 8 chr11 121703674 121703913 -27079559 + AluSx SINE Alu 58 294 -18 593 188 0 80 chr11 121704829 121704967 -27078505 + L2 LINE L2 3187 3313 0 408 20 0 0 chr11 121705211 121705260 -27078212 + (CA)n Simple_repeat Simple_repeat 2 50 0 208 250 132 0 chr11 121707945 121708013 -27075459 - MIR SINE MIR -40 222 146 2081 109 0 0 chr11 121711422 121711730 -27071742 - AluSx SINE Alu 0 308 1 419 309 38 53 chr11 121714554 121714746 -27068726 + MIR SINE MIR 21 208 -54 2401 48 14 0 chr11 121715200 121715493 -27067979 - AluY SINE Alu -14 297 1 2149 119 0 0 chr11 121715551 121715846 -27067626 + AluSx SINE Alu 1 295 -17 203 179 0 0 chr11 121720285 121720324 -27063148 + (TGG)n Simple_repeat Simple_repeat 1 39 0 21 0 0 0 chr11 121724682 121724703 -27058769 + AT_rich Low_complexity Low_complexity 1 21 0 5594 74 42 3 chr11 121726046 121726799 -27056673 - L1PA10 LINE L1 0 6168 5386 2466 49 0 13 chr11 121727001 121727309 -27056163 - AluY SINE Alu -7 304 1 1054 132 109 0 chr11 121727311 121727531 -27055941 - L1PA10 LINE L1 -746 5400 5157 2106 112 20 0 chr11 121727736 121728041 -27055431 - AluSx SINE Alu -1 311 1 2300 98 0 0 chr11 121728240 121728547 -27054925 + AluSq SINE Alu 1 307 -6 225 342 222 18 chr11 121729619 121729961 -27053511 + L2 LINE L2 2353 2764 -550 2042 120 0 0 chr11 121730356 121730655 -27052817 - AluSg SINE Alu -11 299 1 391 302 87 0 chr11 121730828 121730954 -27052518 - MIR SINE MIR -43 219 83 1857 145 3 3 chr11 121731148 121731459 -27052013 - AluSx SINE Alu -1 311 1 185 0 0 39 chr11 121731642 121731668 -27051804 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2443 50 0 10 chr11 121732921 121733220 -27050252 + AluY SINE Alu 1 296 -15 437 306 88 0 chr11 121733527 121733687 -27049785 + MIR SINE MIR 47 220 -42 1554 179 72 51 chr11 121734930 121735305 -27048167 + MLT1B LTR MaLR 1 383 -7 1516 172 7 15 chr11 121735475 121735748 -27047724 + AluJo SINE Alu 22 292 -20 1808 174 0 0 chr11 121735933 121736238 -27047234 - AluSx SINE Alu -3 309 5 247 304 128 0 chr11 121736259 121736361 -27047111 + L2 LINE L2 3149 3263 -9 294 278 138 18 chr11 121736373 121736541 -27046931 - MIR SINE MIR -58 204 18 2272 90 0 3 chr11 121737360 121737661 -27045811 - AluSc SINE Alu -9 300 1 190 233 68 68 chr11 121737974 121738077 -27045395 + L2 LINE L2 2389 2491 -823 694 212 152 65 chr11 121738097 121738328 -27045144 - MIR SINE MIR -4 258 8 330 446 16 9 chr11 121738338 121738656 -27044816 + L2 LINE L2 2494 2813 -501 246 294 46 72 chr11 121738794 121738947 -27044525 + L2 LINE L2 3165 3313 0 755 183 15 168 chr11 121741705 121741772 -27041700 - MIR SINE MIR -26 236 160 1406 173 87 26 chr11 121741772 121742038 -27041434 - AluJo SINE Alu -30 282 1 755 183 15 168 chr11 121742038 121742232 -27041240 - MIR SINE MIR -102 160 15 35 0 0 0 chr11 121742397 121742432 -27041040 + AT_rich Low_complexity Low_complexity 1 35 0 296 260 115 10 chr11 121743563 121743659 -27039813 + L2 LINE L2 3164 3269 -3 381 259 106 69 chr11 121744405 121744594 -27038878 + MIR SINE MIR 1 196 -66 319 256 173 52 chr11 121744727 121744918 -27038554 + MIR SINE MIR 5 218 -44 1558 146 120 0 chr11 121745605 121745879 -27037593 - AluJb SINE Alu -5 307 1 1564 160 7 65 chr11 121746324 121746631 -27036841 - AluJb SINE Alu -23 289 1 572 294 131 14 chr11 121746662 121746883 -27036589 + MIR SINE MIR 16 262 0 347 329 74 40 chr11 121746883 121747032 -27036440 + L2 LINE L2 3115 3268 -4 361 260 195 45 chr11 121747053 121747253 -27036219 - MIR SINE MIR -21 241 12 1154 148 83 36 chr11 121747880 121748157 -27035315 - L1MD3 LINE L1 -8 7987 7698 519 277 155 0 chr11 121748602 121748750 -27034722 - MER5A DNA MER1_type -9 180 10 34 24 0 0 chr11 121749718 121749759 -27033713 + AT_rich Low_complexity Low_complexity 1 41 0 189 200 33 33 chr11 121750186 121750246 -27033226 - MIR SINE MIR 0 262 203 971 255 53 0 chr11 121750248 121750491 -27032981 - MIR SINE MIR -5 257 2 376 287 52 0 chr11 121750551 121750666 -27032806 - MIR SINE MIR -121 141 21 2264 71 10 7 chr11 121750993 121751287 -27032185 - AluSg SINE Alu -15 295 1 180 77 0 0 chr11 121751915 121751941 -27031531 + (TC)n Simple_repeat Simple_repeat 1 26 0 330 45 0 0 chr11 121751942 121751986 -27031486 + (T)n Simple_repeat Simple_repeat 1 44 0 189 0 0 0 chr11 121752015 121752036 -27031436 + (G)n Simple_repeat Simple_repeat 1 21 0 2321 99 3 3 chr11 121752224 121752536 -27030936 - AluSx SINE Alu 0 312 1 602 293 96 8 chr11 121753055 121753294 -27030178 + MIR SINE MIR 1 260 -2 3551 75 6 10 chr11 121753671 121754164 -27029308 + L1PA8 LINE L1 5681 6171 -1 209 156 0 22 chr11 121754582 121754627 -27028845 + (TA)n Simple_repeat Simple_repeat 1 44 0 422 295 35 96 chr11 121755122 121755434 -27028038 + L2 LINE L2 2562 2854 -460 272 342 20 34 chr11 121755498 121755647 -27027825 + L2 LINE L2 2945 3091 -181 490 175 49 42 chr11 121755691 121755834 -27027638 - L1MA9 LINE L1 0 6312 6169 2305 83 7 0 chr11 121756701 121756991 -27026481 + AluY SINE Alu 1 292 -19 216 0 0 0 chr11 121757190 121757214 -27026258 + (A)n Simple_repeat Simple_repeat 1 24 0 227 284 122 7 chr11 121757216 121757364 -27026108 + L1MEc LINE L1 1713 1877 -4519 737 162 70 38 chr11 121757402 121757533 -27025939 + L1MEc LINE L1 1841 1981 -4415 2069 121 7 10 chr11 121757533 121757830 -27025642 - AluSx SINE Alu -16 296 1 737 162 70 38 chr11 121757830 121757883 -27025589 + L1MEc LINE L1 1981 2031 -4365 1502 217 48 74 chr11 121757884 121758381 -27025091 + L1ME1 LINE L1 5678 6161 -5 21 0 0 0 chr11 121758488 121758509 -27024963 + AT_rich Low_complexity Low_complexity 1 21 0 298 336 55 0 chr11 121758509 121758619 -27024853 - MIR3 SINE MIR -21 187 72 553 256 8 0 chr11 121758623 121758744 -27024728 + L2 LINE L2 3186 3307 -6 205 171 0 0 chr11 121758756 121758791 -27024681 + GA-rich Low_complexity Low_complexity 2 36 0 651 265 142 0 chr11 121759310 121759472 -27024000 + MER5A DNA MER1_type 4 188 -1 1467 147 0 5 chr11 121759817 121760035 -27023437 + AluSx SINE Alu 1 217 -95 206 167 21 0 chr11 121760050 121760098 -27023374 + A-rich Low_complexity Low_complexity 5 53 0 1764 164 0 27 chr11 121760425 121760724 -27022748 + AluJo SINE Alu 1 291 -21 834 201 50 0 chr11 121760780 121760939 -27022533 - FAM SINE Alu -8 167 1 1515 134 86 8 chr11 121761103 121761402 -27022070 + Charlie3 DNA MER1_type 1 2706 -4 583 195 102 8 chr11 121761409 121761527 -27021945 + FLAM_A SINE Alu 1 129 -4 189 74 0 0 chr11 121761610 121761637 -27021835 + (CA)n Simple_repeat Simple_repeat 2 28 0 225 141 42 14 chr11 121761669 121761740 -27021732 - Charlie7 DNA MER1_type -88 2524 2452 * 253 146 0 21 chr11 121761737 121761785 -27021687 - Charlie7 DNA MER1_type -2511 101 55 551 246 94 26 chr11 121761819 121762010 -27021462 + MER63A DNA MER1_type 4 207 -3 625 110 0 0 chr11 121762210 121762301 -27021171 + L1PB4 LINE L1 6058 6148 -8 21 95 0 0 chr11 121762353 121762416 -27021056 + AT_rich Low_complexity Low_complexity 1 63 0 1464 136 109 42 chr11 121762615 121762880 -27020592 - AluJb SINE Alu -16 296 14 244 188 0 0 chr11 121763353 121763401 -27020071 - L2 LINE L2 -1 3312 3265 887 132 0 22 chr11 121764157 121764293 -27019179 - FLAM_C SINE Alu 0 133 1 2226 113 0 0 chr11 121764303 121764605 -27018867 - AluSx SINE Alu -10 302 1 2260 106 69 69 chr11 121764732 121765078 -27018394 + Tigger2a DNA MER2_type 1 349 -2359 2168 111 7 7 chr11 121765078 121765376 -27018096 + AluSx SINE Alu 1 298 -14 2260 106 69 69 chr11 121765376 121765463 -27018009 + Tigger2a DNA MER2_type 348 434 0 34 55 0 0 chr11 121766357 121766412 -27017060 + AT_rich Low_complexity Low_complexity 1 55 0 291 28 0 0 chr11 121766510 121766546 -27016926 + (TA)n Simple_repeat Simple_repeat 2 37 0 1183 212 136 31 chr11 121766642 121767033 -27016439 - MLT1J1 LTR MaLR -12 434 3 211 315 151 0 chr11 121767353 121767426 -27016046 - L2 LINE L2 -21 3251 3168 513 324 63 11 chr11 121767908 121768195 -27015277 + L1ME LINE L1 5387 5688 -433 1577 138 108 4 chr11 121768199 121768343 -27015129 - AluJb SINE Alu -16 296 168 288 0 0 0 chr11 121768343 121768375 -27015097 + (CA)n Simple_repeat Simple_repeat 1 32 0 1577 138 108 4 chr11 121768375 121768498 -27014974 - AluJb SINE Alu -144 168 1 278 111 79 16 chr11 121768592 121768655 -27014817 + L1ME4a LINE L1 6053 6119 -2 2209 101 10 3 chr11 121768958 121769254 -27014218 - AluSx SINE Alu -14 298 1 1891 161 0 20 chr11 121769840 121770138 -27013334 + AluJb SINE Alu 1 292 -20 331 202 194 16 chr11 121770291 121770420 -27013052 + L1ME4a LINE L1 5283 5434 -687 27 29 0 0 chr11 121770438 121770472 -27013000 + AT_rich Low_complexity Low_complexity 1 34 0 988 258 130 31 chr11 121770550 121771073 -27012399 + L1ME4a LINE L1 5535 6109 -12 22 0 0 0 chr11 121771185 121771207 -27012265 + AT_rich Low_complexity Low_complexity 1 22 0 733 163 0 15 chr11 121772498 121772633 -27010839 - FLAM_C SINE Alu 0 133 1 461 262 150 32 chr11 121772753 121773154 -27010318 + L1ME4a LINE L1 5623 6070 -51 2361 75 0 13 chr11 121774202 121774507 -27008965 + AluSq SINE Alu 1 301 -12 245 167 17 100 chr11 121776483 121776543 -27006929 - MIR3 SINE MIR -3 205 151 211 350 98 24 chr11 121776675 121776798 -27006674 - MIR3 SINE MIR -27 181 50 3510 209 90 24 chr11 121776876 121777109 -27006363 + L1MC4 LINE L1 6777 6993 -1049 2161 76 29 4 chr11 121777109 121777412 -27006060 + AluSx SINE Alu 1 310 0 3510 209 90 24 chr11 121777412 121778187 -27005285 + L1MC4 LINE L1 6993 7854 -188 1073 109 20 2 chr11 121778193 121778440 -27005032 + AluSx SINE Alu 1 299 -11 364 181 181 62 chr11 121778447 121778607 -27004865 + L1MC4 LINE L1 7864 8042 0 39 0 0 0 chr11 121778620 121778659 -27004813 + AT_rich Low_complexity Low_complexity 1 39 0 2232 95 3 3 chr11 121778934 121779228 -27004244 - AluSc SINE Alu -15 294 1 246 289 0 0 chr11 121779852 121779904 -27003568 + polypyrimidine Low_complexity Low_complexity 2 53 0 234 0 0 0 chr11 121779904 121779930 -27003542 + (CA)n Simple_repeat Simple_repeat 2 27 0 945 83 0 0 chr11 121780409 121780563 -27002909 + AluY SINE Alu 163 316 0 6129 148 28 23 chr11 121780894 121781443 -27002029 - L1MA10 LINE L1 -1 6333 5788 375 23 0 0 chr11 121781443 121781487 -27001985 + (TG)n Simple_repeat Simple_repeat 2 45 0 6129 148 28 23 chr11 121781487 121782611 -27000861 - L1MA10 LINE L1 -546 5788 4647 1543 167 16 74 chr11 121782608 121782851 -27000621 + L1 LINE L1 2678 2895 -3251 * 677 212 25 0 chr11 121782851 121782969 -27000503 + FLAM_A SINE Alu 1 121 -12 1543 167 16 74 chr11 121782969 121783090 -27000382 + L1 LINE L1 2895 3021 -3125 23 33 0 0 chr11 121783145 121783175 -27000297 + AT_rich Low_complexity Low_complexity 1 30 0 1418 297 175 26 chr11 121783200 121783443 -27000029 - L3 LINE CR1 -7 1570 1365 387 41 0 0 chr11 121783443 121783492 -26999980 + (CA)n Simple_repeat Simple_repeat 2 50 0 1418 297 175 26 chr11 121783492 121784047 -26999425 - L3 LINE CR1 -212 1365 653 188 276 82 51 chr11 121784103 121784201 -26999271 - L3 LINE CR1 -921 656 556 760 199 0 0 chr11 121784233 121784364 -26999108 - FLAM_A SINE Alu 0 133 3 1872 130 31 10 chr11 121784438 121784731 -26998741 + AluSx SINE Alu 1 299 -13 303 290 140 0 chr11 121784953 121785053 -26998419 - L2 LINE L2 -17 3255 3142 * 691 245 43 6 chr11 121785037 121785200 -26998272 + MIR SINE MIR 15 183 -79 350 345 44 68 chr11 121785193 121785445 -26998027 - L2 LINE L2 -122 3150 2905 * 186 322 78 0 chr11 121785649 121785739 -26997733 - L2 LINE L2 -814 2500 2404 * 395 308 39 0 chr11 121785723 121785827 -26997645 - L2 LINE L2 -14 3258 3151 223 288 42 102 chr11 121785821 121785939 -26997533 - L3 LINE CR1 -1050 527 417 * 425 294 187 58 chr11 121785999 121786124 -26997348 - L2 LINE L2 -1025 2289 2181 937 169 0 30 chr11 121786124 121786290 -26997182 + FRAM SINE Alu 2 162 -4 425 294 187 58 chr11 121786290 121786702 -26996770 - L2 LINE L2 -1133 2181 1823 327 65 0 0 chr11 121786702 121786748 -26996724 + (TG)n Simple_repeat Simple_repeat 2 47 0 425 294 187 58 chr11 121786748 121787066 -26996406 - L2 LINE L2 -1491 1823 1323 1098 170 0 0 chr11 121787086 121787251 -26996221 + FRAM SINE Alu 1 164 -12 344 309 0 0 chr11 121787405 121787486 -26995986 + L2 LINE L2 3183 3263 -9 2041 177 14 3 chr11 121788167 121788528 -26994944 - MLT1A1 LTR MaLR 0 365 1 205 288 0 15 chr11 121788829 121788895 -26994577 + (TG)n Simple_repeat Simple_repeat 2 66 0 701 250 75 58 chr11 121789576 121789669 -26993803 + L1M4 LINE L1 4750 4840 -1306 2296 125 0 0 chr11 121789669 121789981 -26993491 - AluSx SINE Alu 0 312 1 701 250 75 58 chr11 121789981 121790078 -26993394 + L1M4 LINE L1 4840 4934 -1212 1897 151 25 0 chr11 121790078 121790363 -26993109 + AluJb SINE Alu 1 292 -20 701 250 75 58 chr11 121790363 121790583 -26992889 + L1M4 LINE L1 4934 5168 -978 212 159 45 0 chr11 121790734 121790778 -26992694 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 1668 117 68 4 chr11 121790789 121791077 -26992395 + AluY SINE Alu 1 305 0 511 259 62 31 chr11 121791179 121791372 -26992100 - MIR SINE MIR -56 206 8 189 0 0 0 chr11 121791894 121791915 -26991557 + (TCCA)n Simple_repeat Simple_repeat 2 22 0 250 291 39 58 chr11 121792835 121792938 -26990534 + MIR SINE MIR 28 128 -80 934 155 6 30 chr11 121792938 121793106 -26990366 + THE1C LTR MaLR 1 164 -211 966 112 0 15 chr11 121793107 121793279 -26990193 - AluSc SINE Alu 0 309 157 854 84 0 0 chr11 121793279 121793386 -26990086 - AluSq/x SINE Alu -206 107 1 302 119 0 0 chr11 121793386 121793428 -26990044 + THE1C LTR MaLR 153 194 -181 231 156 109 31 chr11 121793416 121793480 -26989992 + THE1C LTR MaLR 307 375 0 * 977 224 75 57 chr11 121793653 121793934 -26989538 + Zaphod DNA AcHobo 5 290 -3741 2009 105 0 0 chr11 121793934 121794191 -26989281 + AluSx SINE Alu 1 257 -55 236 79 32 79 chr11 121794193 121794256 -26989216 + (TAAA)n Simple_repeat Simple_repeat 1 60 0 414 160 39 92 chr11 121794280 121794486 -26988986 + Zaphod DNA AcHobo 797 991 -3040 407 138 9 119 chr11 121794478 121794540 -26988932 + Zaphod DNA AcHobo 3590 3637 -394 * 1914 156 3 10 chr11 121794540 121794835 -26988637 + AluJo SINE Alu 1 293 -19 407 138 9 119 chr11 121794835 121794881 -26988591 + Zaphod DNA AcHobo 3637 3686 -345 464 48 16 0 chr11 121795251 121795314 -26988158 + (TG)n Simple_repeat Simple_repeat 2 65 0 1813 129 23 50 chr11 121795447 121795750 -26987722 + AluJb SINE Alu 1 295 -17 534 244 26 47 chr11 121796199 121796392 -26987080 + MIR3 SINE MIR 5 193 -15 211 204 20 0 chr11 121796348 121796397 -26987075 + L3 LINE CR1 1523 1572 -5 * 365 286 71 18 chr11 121796583 121796751 -26986721 + L1MC4a LINE L1 6559 6735 -1073 1165 274 81 35 chr11 121796752 121796870 -26986602 + LTR16A LTR ERVL 1 112 -338 1381 145 23 0 chr11 121796870 121797084 -26986388 - MER20 DNA MER1_type 0 219 1 1165 274 81 35 chr11 121797084 121797395 -26986077 + LTR16A LTR ERVL 112 450 0 1406 189 121 83 chr11 121797395 121797915 -26985557 + L1MC5 LINE L1 6738 7277 -684 1581 270 93 19 chr11 121797951 121798499 -26984973 - MER77 LTR ERV1 -4 601 53 465 161 43 0 chr11 121798541 121798634 -26984838 + L1MC5 LINE L1 7300 7396 -565 1223 203 48 45 chr11 121798659 121799034 -26984438 + L1MC5 LINE L1 7454 7829 -132 682 176 32 8 chr11 121799368 121799493 -26983979 - FLAM_C SINE Alu -5 128 1 1901 152 58 31 chr11 121799797 121799840 -26983632 - THE1C LTR MaLR 0 426 386 2151 136 3 0 chr11 121799840 121800150 -26983322 + AluJb SINE Alu 1 311 -1 1901 152 58 31 chr11 121800150 121800508 -26982964 - THE1C LTR MaLR -40 386 1 2380 88 0 0 chr11 121800772 121801066 -26982406 - AluSg SINE Alu -16 294 1 895 156 43 0 chr11 121802554 121802695 -26980777 + AluSp SINE Alu 137 283 -30 268 278 40 60 chr11 121802747 121802898 -26980574 + MER31-int LTR ERV1 3839 3986 -950 810 83 18 0 chr11 121803514 121803623 -26979849 + AluY SINE Alu 192 302 -9 236 238 40 30 chr11 121803859 121803960 -26979512 + L1MC5 LINE L1 7830 7931 -30 349 242 0 42 chr11 121804607 121804702 -26978770 - L2 LINE L2 0 3313 3223 2219 108 7 3 chr11 121805087 121805393 -26978079 - AluSq SINE Alu -4 309 3 907 294 108 30 chr11 121805740 121806202 -26977270 - LTR33 LTR ERVL 0 521 24 402 252 37 19 chr11 121806521 121806628 -26976844 + L2 LINE L2 3164 3272 0 247 298 160 18 chr11 121806887 121807112 -26976360 - L2 LINE L2 -208 3064 2808 230 258 0 16 chr11 121808060 121808122 -26975350 - L2 LINE L2 -21 3292 3232 26 50 0 0 chr11 121808573 121808613 -26974859 + AT_rich Low_complexity Low_complexity 1 40 0 2368 98 0 3 chr11 121808969 121809274 -26974198 - AluSc SINE Alu -5 304 1 399 65 0 143 chr11 121809539 121809576 -26973896 - MADE1 DNA Mariner -14 66 44 2196 107 0 10 chr11 121809576 121809874 -26973598 + AluSx SINE Alu 1 295 -17 399 65 0 143 chr11 121809874 121809913 -26973559 - MADE1 DNA Mariner -36 44 1 2175 126 0 0 chr11 121809949 121810242 -26973230 - AluSg SINE Alu -17 293 1 396 232 33 61 chr11 121810264 121810445 -26973027 - L1MC5 LINE L1 -241 7720 7545 1429 142 28 82 chr11 121810566 121810689 -26972783 + MER2 DNA MER2_type 1 129 -216 1790 160 3 0 chr11 121810689 121810983 -26972489 - AluJo SINE Alu -6 306 12 1429 142 28 82 chr11 121810983 121811141 -26972331 + MER2 DNA MER2_type 129 267 -78 377 222 14 0 chr11 121811247 121811319 -26972153 + MER2 DNA MER2_type 273 345 0 195 254 32 0 chr11 121812015 121812078 -26971394 - L3 LINE CR1 -218 1359 1295 2538 150 33 9 chr11 121812235 121812654 -26970818 - MLT1C LTR MaLR -2 465 37 459 325 58 11 chr11 121812708 121812896 -26970576 - MIR SINE MIR -50 212 16 2213 104 0 10 chr11 121813145 121813443 -26970029 - AluSx SINE Alu -5 307 13 1379 127 54 0 chr11 121813446 121813651 -26969821 - MER1B DNA MER1_type -81 216 1 531 0 0 0 chr11 121813669 121813728 -26969744 + (TG)n Simple_repeat Simple_repeat 2 60 0 2147 94 25 0 chr11 121813728 121814003 -26969469 - AluSc SINE Alu -27 282 1 504 111 0 25 chr11 121814744 121814850 -26968622 + AluSg/x SINE Alu 204 307 0 2512 117 92 25 chr11 121814958 121815318 -26968154 - MSTC LTR MaLR 0 428 37 1945 149 9 19 chr11 121815318 121815633 -26967839 - AluJo SINE Alu 0 312 1 2512 117 92 25 chr11 121815633 121815673 -26967799 - MSTC LTR MaLR -391 37 1 205 311 101 25 chr11 121816216 121816335 -26967137 - L2 LINE L2 -1 3271 3144 181 244 78 33 chr11 121816646 121816736 -26966736 + L3b LINE CR1 1161 1254 -329 1862 161 0 0 chr11 121816976 121817268 -26966204 - AluJo SINE Alu -20 292 1 197 227 23 0 chr11 121817631 121817675 -26965797 - L2 LINE L2 -17 3255 3211 1974 136 20 10 chr11 121818587 121818927 -26964545 + AluJb SINE Alu 1 312 0 1535 173 95 35 chr11 121818931 121819260 -26964212 + Charlie4a DNA MER1_type 85 444 -1517 2266 96 6 22 chr11 121819260 121819542 -26963930 + AluSx SINE Alu 1 279 -33 180 0 0 0 chr11 121819542 121819562 -26963910 + (TA)n Simple_repeat Simple_repeat 2 21 0 2266 96 6 22 chr11 121819562 121819593 -26963879 + AluSx SINE Alu 279 309 -3 1535 173 95 35 chr11 121819593 121819663 -26963809 + Charlie4a DNA MER1_type 444 508 0 227 253 189 0 chr11 121819850 121819945 -26963527 - MIR SINE MIR 0 262 150 234 0 0 0 chr11 121820121 121820147 -26963325 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 226 98 0 0 chr11 121820895 121820936 -26962536 + L1PB3 LINE L1 6114 6154 0 733 250 66 88 chr11 121821731 121822410 -26961062 + MER21B LTR ERV1 1 788 -143 231 315 14 0 chr11 121822468 121822541 -26960931 - MIR SINE MIR -108 154 81 394 220 45 79 chr11 121824026 121824203 -26959269 - L1MC5 LINE L1 -37 7924 7754 342 0 0 0 chr11 121824592 121824630 -26958842 + (TG)n Simple_repeat Simple_repeat 2 39 0 2236 102 7 16 chr11 121824709 121825012 -26958460 - AluSx SINE Alu -10 302 3 562 237 17 62 chr11 121825013 121825075 -26958397 - MIR SINE MIR -43 219 156 1621 79 0 5 chr11 121825075 121825303 -26958169 - AluY SINE Alu 0 309 83 562 237 17 62 chr11 121825303 121825416 -26958056 - MIR SINE MIR -106 156 51 245 254 56 14 chr11 121825456 121825527 -26957945 - L2 LINE L2 -48 3265 3192 385 152 125 18 chr11 121826134 121826246 -26957226 - L1MC4 LINE L1 0 8042 7919 195 184 0 0 chr11 121826303 121826341 -26957131 + (CATA)n Simple_repeat Simple_repeat 1 38 0 1093 239 33 7 chr11 121826341 121826617 -26956855 - L1MC4 LINE L1 -128 7914 7632 1461 258 74 39 chr11 121826920 121827382 -26956090 + LTR33 LTR ERVL 44 521 0 4819 295 46 32 chr11 121829966 121832485 -26950987 + HERV16 LTR ERVL 1736 4378 -1386 566 334 40 25 chr11 121832502 121833226 -26950246 + HERV16 LTR ERVL 4744 4996 0 180 0 0 0 chr11 121833270 121833290 -26950182 + (TA)n Simple_repeat Simple_repeat 2 21 0 687 276 29 45 chr11 121834983 121835226 -26948246 - MIR SINE MIR -1 261 23 405 200 86 9 chr11 121835461 121835566 -26947906 - L2 LINE L2 -5 3267 3155 2009 117 0 29 chr11 121887450 121887757 -26895715 - AluSg SINE Alu -12 298 1 1889 166 7 0 chr11 121887790 121888098 -26895374 - AluJb SINE Alu -2 310 1 248 333 31 16 chr11 121888441 121888570 -26894902 + L3b LINE CR1 1327 1457 -126 2357 83 0 3 chr11 121889143 121889431 -26894041 + AluSg SINE Alu 1 287 -23 2154 121 0 19 chr11 121889539 121889854 -26893618 - AluSg SINE Alu -1 309 1 287 230 16 56 chr11 121889877 121890003 -26893469 - HAL1 LINE L1 -143 2364 2244 2042 112 0 37 chr11 121890128 121890424 -26893048 + AluSx SINE Alu 1 285 -27 28 29 0 0 chr11 121890424 121890459 -26893013 + AT_rich Low_complexity Low_complexity 1 35 0 387 236 65 8 chr11 121890774 121890897 -26892575 - MLT1C LTR MaLR 0 467 338 207 100 0 0 chr11 121892274 121892304 -26891168 + (A)n Simple_repeat Simple_repeat 1 30 0 1249 167 5 0 chr11 121892624 121892822 -26890650 - AluJo SINE Alu -28 284 86 2105 105 3 7 chr11 121893321 121893606 -26889866 + AluSq SINE Alu 1 321 0 252 27 0 27 chr11 121893606 121893643 -26889829 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 309 282 35 21 chr11 121893672 121893814 -26889658 + L1ME LINE L1 5650 5793 -328 536 283 61 6 chr11 121893896 121894076 -26889396 - MLT1L LTR MaLR -81 534 345 362 297 23 0 chr11 121894345 121894473 -26888999 - L1ME LINE L1 -430 5691 5561 2146 135 0 3 chr11 121894649 121894953 -26888519 + AluSx SINE Alu 1 303 -9 245 213 75 21 chr11 121895154 121895248 -26888224 + L1MC5 LINE L1 7785 7883 -78 1930 164 29 3 chr11 121895275 121895622 -26887850 - L1MB3 LINE L1 -8 6175 5820 2170 151 19 19 chr11 121895622 121895986 -26887486 - THE1B LTR MaLR 0 364 1 2436 81 7 7 chr11 121895993 121896300 -26887172 - AluSc SINE Alu -2 307 1 22 35 0 0 chr11 121896300 121896329 -26887143 + AT_rich Low_complexity Low_complexity 1 29 0 2182 134 0 10 chr11 121896474 121896780 -26886692 + AluSx SINE Alu 1 303 -9 22 0 0 0 chr11 121897553 121897575 -26885897 + AT_rich Low_complexity Low_complexity 1 22 0 1233 131 6 0 chr11 121897575 121897751 -26885721 - AluJb SINE Alu -16 296 120 24 53 0 0 chr11 121897884 121897922 -26885550 + AT_rich Low_complexity Low_complexity 1 38 0 2290 112 3 0 chr11 121897966 121898271 -26885201 - AluSg SINE Alu -4 306 1 35 0 0 0 chr11 121898567 121898602 -26884870 + AT_rich Low_complexity Low_complexity 1 35 0 2200 115 0 0 chr11 121898602 121898890 -26884582 - AluSx SINE Alu -24 288 1 2197 104 0 10 chr11 121898903 121899191 -26884281 - AluSx SINE Alu -27 285 1 888 267 112 45 chr11 121899542 121899946 -26883526 - L1MEd LINE L1 -5294 825 377 2063 84 0 61 chr11 121899946 121900243 -26883229 - AluSp SINE Alu -20 293 15 888 267 112 45 chr11 121900243 121900355 -26883117 - L1MEd LINE L1 -5742 377 274 1739 168 3 10 chr11 121900388 121900679 -26882793 + AluJo SINE Alu 1 289 -23 2312 83 0 14 chr11 121900688 121900978 -26882494 + AluY SINE Alu 1 286 -25 23 0 0 0 chr11 121900978 121901001 -26882471 + AT_rich Low_complexity Low_complexity 1 23 0 2248 86 21 7 chr11 121901152 121901442 -26882030 + AluSq SINE Alu 1 294 -19 256 351 131 42 chr11 121901624 121901973 -26881499 + L2 LINE L2 2384 2775 -539 2025 144 0 0 chr11 121901973 121902272 -26881200 + AluJb SINE Alu 1 299 -13 256 351 131 42 chr11 121902272 121902326 -26881146 + L2 LINE L2 2775 2823 -491 287 283 150 17 chr11 121902567 121902687 -26880785 + L2 LINE L2 3137 3272 0 1843 137 0 70 chr11 121902901 121903215 -26880257 - AluJo SINE Alu -16 296 5 508 198 30 0 chr11 121903556 121903657 -26879815 + MER97c DNA MER1_type? 58 161 -929 2257 108 0 0 chr11 121904232 121904529 -26878943 + AluY SINE Alu 1 297 -14 30 27 0 0 chr11 121904621 121904658 -26878814 + AT_rich Low_complexity Low_complexity 1 37 0 1522 151 4 20 chr11 121905796 121905957 -26877515 - AluJo SINE Alu -21 291 134 2191 92 7 10 chr11 121905957 121906279 -26877193 - AluSg SINE Alu 0 310 1 1522 151 4 20 chr11 121906279 121906362 -26877110 - AluJo SINE Alu -178 134 51 298 295 101 7 chr11 121906398 121906537 -26876935 - L2 LINE L2 -1 3312 3161 301 316 155 12 chr11 121906595 121906763 -26876709 - L2 LINE L2 -400 2914 2723 4110 148 75 21 chr11 121906793 121907033 -26876439 - L1MB7 LINE L1 0 6184 5958 2147 86 3 95 chr11 121907033 121907369 -26876103 + AluSp SINE Alu 3 307 -6 4110 148 75 21 chr11 121907369 121907927 -26875545 - L1MB7 LINE L1 -226 5958 5343 359 278 74 45 chr11 121907931 121908107 -26875365 - L2 LINE L2 -604 2710 2530 1219 89 0 11 chr11 121908130 121908309 -26875163 - L1PA8 LINE L1 0 6172 5996 2221 110 0 7 chr11 121908327 121908619 -26874853 - AluSx SINE Alu -22 290 1 2452 70 0 3 chr11 121909032 121909332 -26874140 - AluY SINE Alu -12 299 1 378 0 0 0 chr11 121909637 121909679 -26873793 + (T)n Simple_repeat Simple_repeat 1 42 0 2550 60 0 3 chr11 121909970 121910269 -26873203 - AluSg SINE Alu -12 298 1 199 333 31 16 chr11 121910842 121910971 -26872501 - L3b LINE CR1 -126 1457 1327 1891 166 7 0 chr11 121911314 121911622 -26871850 + AluJb SINE Alu 1 310 -2 2281 101 3 0 chr11 121911655 121911952 -26871520 + AluSg SINE Alu 1 298 -12 2277 92 0 7 chr11 121912351 121912644 -26870828 - AluSc SINE Alu -18 291 1 314 153 200 0 chr11 121912796 121912881 -26870591 - L2 LINE L2 -3 3310 3209 2468 80 3 0 chr11 121912948 121913247 -26870225 + AluSx SINE Alu 1 300 -12 2145 96 10 3 chr11 121913398 121913690 -26869782 - AluSx SINE Alu -16 296 3 733 62 72 0 chr11 121913877 121913974 -26869498 + U6 snRNA snRNA 1 104 -3 807 144 83 17 chr11 121913992 121914173 -26869299 + L1MA8 LINE L1 6079 6271 -20 425 115 0 0 chr11 121914193 121914254 -26869218 - Alu SINE Alu -17 295 235 1780 138 6 45 chr11 121914279 121914590 -26868882 + AluJo SINE Alu 1 299 -13 2198 95 7 0 chr11 121916157 121916441 -26867031 + AluSx SINE Alu 1 286 -26 841 141 0 22 chr11 121916728 121916863 -26866609 - FLAM_A SINE Alu -1 132 1 286 305 59 8 chr11 121917069 121917187 -26866285 - L2 LINE L2 0 3272 3149 28 0 0 0 chr11 121918894 121918922 -26864550 + AT_rich Low_complexity Low_complexity 1 28 0 5658 47 95 6 chr11 121918922 121920091 -26863381 - SVA Other Other -955 1382 1 1699 97 0 9 chr11 121920357 121920584 -26862888 + AluSg/x SINE Alu 80 304 -6 180 0 0 0 chr11 121920685 121920705 -26862767 + (A)n Simple_repeat Simple_repeat 1 20 0 3180 151 32 5 chr11 121920710 121921266 -26862206 - L1MB7 LINE L1 -271 5913 5343 359 278 74 45 chr11 121921270 121921446 -26862026 - L2 LINE L2 -604 2710 2530 1065 140 0 0 chr11 121921469 121921647 -26861825 - L1PA8 LINE L1 0 6172 5995 2229 81 3 7 chr11 121921663 121921948 -26861524 - AluSg SINE Alu -25 285 2 205 292 31 15 chr11 121922767 121922832 -26860640 + MIR SINE MIR 38 103 -105 26 0 0 0 chr11 121923954 121923980 -26859492 + AT_rich Low_complexity Low_complexity 1 26 0 1950 137 10 26 chr11 121927532 121927838 -26855634 + AluJo SINE Alu 1 301 -11 2198 95 7 0 chr11 121929405 121929689 -26853783 + AluSx SINE Alu 1 286 -26 841 141 0 22 chr11 121929976 121930111 -26853361 - FLAM_A SINE Alu -1 132 1 286 305 59 8 chr11 121930317 121930435 -26853037 - L2 LINE L2 0 3272 3149 23 0 0 0 chr11 121932145 121932168 -26851304 + AT_rich Low_complexity Low_complexity 1 23 0 7269 49 9 14 chr11 121932168 121933790 -26849682 - SVA Other Other -723 1382 1 1364 116 0 56 chr11 121934056 121934289 -26849183 + AluSg/x SINE Alu 82 301 -11 1701 171 79 30 chr11 121935119 121935487 -26847985 - MSTB LTR MaLR 0 426 41 403 111 0 0 chr11 121936234 121936288 -26847184 - MSTB LTR MaLR -372 54 1 1734 159 0 17 chr11 121937249 121937551 -26845921 - AluSg SINE Alu -3 307 11 2365 100 0 3 chr11 121937565 121937865 -26845607 - AluSx SINE Alu -13 299 1 432 130 0 0 chr11 121937908 121937977 -26845495 + (TG)n Simple_repeat Simple_repeat 2 70 0 225 0 0 0 chr11 121937976 121938001 -26845471 + (T)n Simple_repeat Simple_repeat 1 25 0 * 1753 122 56 43 chr11 121938198 121938502 -26844970 - AluSx SINE Alu -4 308 1 431 113 0 0 chr11 121938527 121938589 -26844883 + Alu SINE Alu 235 296 -16 850 147 65 16 chr11 121938609 121938793 -26844679 - L1MA8 LINE L1 -20 6271 6079 733 62 72 0 chr11 121938811 121938908 -26844564 - U6 snRNA snRNA -3 104 1 2164 100 10 3 chr11 121939095 121939395 -26844077 + AluSx SINE Alu 3 304 -8 1801 167 3 22 chr11 121940016 121940333 -26843139 - AluJo SINE Alu -1 311 1 22 0 0 0 chr11 121940734 121940756 -26842716 + AT_rich Low_complexity Low_complexity 1 22 0 2388 76 0 0 chr11 121940756 121941044 -26842428 - AluY SINE Alu -16 295 8 2327 103 0 7 chr11 121941083 121941385 -26842087 - AluSx SINE Alu -12 300 1 2164 113 0 13 chr11 121941798 121942100 -26841372 - AluSg SINE Alu -12 298 1 2434 70 0 10 chr11 121942100 121942402 -26841070 - AluY SINE Alu -12 299 1 2366 90 0 7 chr11 121942402 121942703 -26840769 - AluSx SINE Alu -13 299 1 728 242 47 71 chr11 121942750 121943010 -26840462 - L1MC4a LINE L1 -1868 5940 5688 2354 101 0 3 chr11 121943010 121943317 -26840155 - AluSg SINE Alu -4 306 1 728 242 47 71 chr11 121943317 121943378 -26840094 - L1MC4a LINE L1 -2120 5688 5627 241 97 0 0 chr11 121943513 121943544 -26839928 + MER103 DNA DNA 2 32 -134 292 308 13 90 chr11 121944285 121944452 -26839020 - MIR3 SINE MIR -70 138 1 265 286 52 13 chr11 121945495 121945572 -26837900 + MIR3 SINE MIR 2 81 -127 395 300 62 71 chr11 121946171 121946411 -26837061 + MIR SINE MIR 15 252 -10 1894 131 0 4 chr11 121946417 121946685 -26836787 + AluSx SINE Alu 1 267 -45 327 203 0 0 chr11 121946707 121946781 -26836691 + (CATA)n Simple_repeat Simple_repeat 4 77 0 299 233 11 11 chr11 121946781 121946871 -26836601 - L1MC4 LINE L1 -1339 6703 6614 * 323 267 0 0 chr11 121946793 121946883 -26836589 + L1MC4 LINE L1 6614 6703 -1339 431 194 10 0 chr11 121946884 121946982 -26836490 + (TA)n Simple_repeat Simple_repeat 2 100 0 353 282 60 27 chr11 121947121 121947270 -26836202 - L2 LINE L2 -46 3267 3114 2322 98 3 0 chr11 121948881 121949177 -26834295 + AluSx SINE Alu 1 297 -15 1495 95 0 38 chr11 121949645 121949856 -26833616 - AluSq SINE Alu -18 295 93 535 304 83 31 chr11 121950159 121950485 -26832987 + L2 LINE L2 1669 2011 -1303 288 326 54 0 chr11 121950511 121950603 -26832869 - L2 LINE L2 -4 3268 3172 355 317 43 70 chr11 121950629 121950847 -26832625 + L2 LINE L2 2067 2276 -1038 2135 97 37 3 chr11 121950847 121951146 -26832326 - AluSx SINE Alu -3 309 1 355 317 43 70 chr11 121951146 121951227 -26832245 + L2 LINE L2 2276 2358 -956 268 380 88 9 chr11 121951245 121951461 -26832011 + MIR SINE MIR 20 252 -10 196 310 90 0 chr11 121951466 121951566 -26831906 + L2 LINE L2 1728 1836 -1478 5077 141 46 35 chr11 121951652 121951895 -26831577 + L1MB5 LINE L1 4890 5129 -1045 1933 126 58 0 chr11 121951895 121952172 -26831300 + AluSx SINE Alu 1 293 -19 2140 112 3 0 chr11 121952179 121952475 -26830997 + AluSx SINE Alu 14 310 -2 5077 141 46 35 chr11 121952475 121952729 -26830743 + L1MB5 LINE L1 5134 5384 -790 2206 123 0 0 chr11 121952729 121953021 -26830451 + AluSc SINE Alu 1 292 -17 5077 141 46 35 chr11 121953021 121953788 -26829684 + L1MB5 LINE L1 5384 6174 0 1392 211 79 24 chr11 121953810 121954067 -26829405 + L1MCc LINE L1 16 302 -6121 2392 96 0 0 chr11 121954067 121954369 -26829103 - AluSq SINE Alu -11 302 1 1392 211 79 24 chr11 121954369 121954491 -26828981 + L1MCc LINE L1 302 416 -6007 4561 122 20 63 chr11 121954502 121954821 -26828651 + L1MA4 LINE L1 5434 5765 -535 1678 174 50 7 chr11 121954821 121955120 -26828352 + AluJo SINE Alu 1 312 0 4561 122 20 63 chr11 121955120 121955533 -26827939 + L1MA4 LINE L1 5765 6194 -106 1466 104 233 0 chr11 121955533 121955782 -26827690 + AluSx SINE Alu 1 307 -5 4561 122 20 63 chr11 121955782 121955829 -26827643 + L1MA4 LINE L1 6194 6177 -123 2258 105 3 3 chr11 121955829 121956135 -26827337 + AluSp SINE Alu 1 306 -7 4561 122 20 63 chr11 121956135 121956208 -26827264 + L1MA4 LINE L1 6176 6251 -49 725 194 16 16 chr11 121956210 121956339 -26827133 + FLAM_A SINE Alu 1 129 -4 316 256 98 0 chr11 121956341 121956423 -26827049 + L1MC4 LINE L1 6614 6703 -1339 242 213 27 13 chr11 121956430 121956505 -26826967 + L1MA4 LINE L1 6221 6296 -4 1917 262 133 25 chr11 121956529 121957460 -26826012 + L1MCc LINE L1 413 1512 -4911 1182 217 40 79 chr11 121957458 121957727 -26825745 + L1MCc LINE L1 3005 3254 -3687 * 1820 127 0 48 chr11 121957727 121958019 -26825453 + AluJb SINE Alu 3 280 -32 1182 217 40 79 chr11 121958019 121958169 -26825303 + L1MCc LINE L1 3254 3408 -3533 572 132 0 0 chr11 121958170 121958246 -26825226 + AluS SINE Alu 2 77 -235 14353 122 4 21 chr11 121958246 121960497 -26822975 + L1P LINE L1 143 2355 -3791 2568 57 3 0 chr11 121960597 121960896 -26822576 - AluSp SINE Alu -13 300 1 531 242 5 81 chr11 121961370 121961556 -26821916 - MIR SINE MIR -14 248 77 321 263 0 0 chr11 121961871 121961951 -26821521 + MIR3 SINE MIR 120 199 -9 549 113 0 25 chr11 121962160 121962240 -26821232 - AluJ/FRAM SINE Alu -14 298 221 2243 106 0 0 chr11 121962579 121962881 -26820591 - AluSx SINE Alu -10 302 1 2398 97 0 3 chr11 121962945 121963253 -26820219 + AluSx SINE Alu 1 307 -5 33 25 0 0 chr11 121963512 121963552 -26819920 + AT_rich Low_complexity Low_complexity 1 40 0 615 291 59 35 chr11 121964264 121964518 -26818954 + MIR SINE MIR 3 262 0 215 305 183 42 chr11 121964643 121964856 -26818616 - MIR SINE MIR -18 244 2 452 235 268 0 chr11 121965478 121965631 -26817841 + MIR SINE MIR 3 196 -66 778 285 37 59 chr11 121965788 121965982 -26817490 - L2 LINE L2 -244 3069 2872 2387 64 3 7 chr11 121965982 121966280 -26817192 + AluY SINE Alu 1 297 -14 778 285 37 59 chr11 121966280 121966495 -26816977 - L2 LINE L2 -441 2872 2667 2224 165 0 3 chr11 121968046 121968391 -26815081 + MER2 DNA MER2_type 1 344 0 1931 128 10 35 chr11 121968575 121968887 -26814585 - AluSx SINE Alu -8 304 1 423 145 0 0 chr11 121968912 121968974 -26814498 + Alu SINE Alu 234 295 -16 809 149 83 17 chr11 121968994 121969175 -26814297 - L1MA8 LINE L1 -20 6271 6079 772 62 72 0 chr11 121969193 121969290 -26814182 - U6 snRNA snRNA -3 104 1 2145 100 10 3 chr11 121969477 121969777 -26813695 + AluSx SINE Alu 3 304 -8 1807 164 3 22 chr11 121970396 121970713 -26812759 - AluJo SINE Alu -1 311 1 22 0 0 0 chr11 121971114 121971136 -26812336 + AT_rich Low_complexity Low_complexity 1 22 0 2318 83 0 0 chr11 121971136 121971425 -26812047 - AluY SINE Alu -15 296 8 2305 103 0 7 chr11 121971464 121971766 -26811706 - AluSx SINE Alu -12 300 1 2222 90 7 13 chr11 121972179 121972480 -26810992 - AluSp SINE Alu -12 301 3 593 298 102 14 chr11 121972882 121973107 -26810365 + L1M4 LINE L1 2153 2357 -3789 1585 174 17 33 chr11 121973107 121973406 -26810066 + AluJo SINE Alu 1 294 -18 593 298 102 14 chr11 121973406 121973737 -26809735 + L1M4 LINE L1 2357 2758 -3388 2552 176 78 21 chr11 121973765 121974281 -26809191 + L1M2 LINE L1 1 545 -6304 4821 90 9 2 chr11 121974283 121974915 -26808557 - Charlie3 DNA MER1_type -352 2358 1722 2364 84 3 0 chr11 121974915 121975211 -26808261 + AluSc SINE Alu 1 297 -12 2674 55 3 0 chr11 121975311 121975622 -26807850 - AluSp SINE Alu -1 312 1 530 257 5 86 chr11 121976097 121976284 -26807188 - MIR SINE MIR -14 248 77 321 263 0 0 chr11 121976599 121976679 -26806793 + MIR3 SINE MIR 120 199 -9 543 114 0 25 chr11 121976888 121976967 -26806505 - AluJ/FRAM SINE Alu -15 297 221 2243 106 0 0 chr11 121977306 121977608 -26805864 - AluSx SINE Alu -10 302 1 2412 94 0 3 chr11 121977672 121977980 -26805492 + AluSx SINE Alu 1 307 -5 33 25 0 0 chr11 121978239 121978279 -26805193 + AT_rich Low_complexity Low_complexity 1 40 0 615 291 59 35 chr11 121978991 121979245 -26804227 + MIR SINE MIR 3 262 0 215 305 183 42 chr11 121979370 121979583 -26803889 - MIR SINE MIR -18 244 2 452 235 268 0 chr11 121980206 121980359 -26803113 + MIR SINE MIR 3 196 -66 778 285 37 59 chr11 121980516 121980710 -26802762 - L2 LINE L2 -244 3069 2872 2422 64 3 3 chr11 121980710 121981007 -26802465 + AluY SINE Alu 1 297 -14 778 285 37 59 chr11 121981007 121981222 -26802250 - L2 LINE L2 -441 2872 2667 2190 171 0 3 chr11 121982773 121983118 -26800354 + MER2 DNA MER2_type 1 344 0 1681 124 8 0 chr11 121983302 121983544 -26799928 - AluSx SINE Alu -8 304 61 1929 165 0 7 chr11 121983860 121984163 -26799309 + AluJb SINE Alu 1 301 -11 2111 113 0 17 chr11 121984515 121984815 -26798657 + AluSg SINE Alu 1 295 -15 5957 195 64 107 chr11 121985147 121985547 -26797925 - L1M4 LINE L1 -905 5241 4825 10405 76 3 2 chr11 121985547 121987658 -26795814 - L1PA7 LINE L1 0 6154 4074 2107 129 0 0 chr11 121987659 121987946 -26795526 - AluSx SINE Alu -25 287 1 5957 195 64 107 chr11 121987946 121988082 -26795390 - L1M4 LINE L1 -1321 4825 4685 1873 71 0 0 chr11 121988082 121988306 -26795166 - AluY SINE Alu -3 308 85 5957 195 64 107 chr11 121988306 121988699 -26794773 - L1M4 LINE L1 -1461 4685 4277 489 146 22 0 chr11 121988699 121988788 -26794684 - HY1 scRNA scRNA -1 111 21 5957 195 64 107 chr11 121988788 121989915 -26793557 - L1M4 LINE L1 -1869 4277 3185 394 237 35 9 chr11 121989906 121990020 -26793452 + L1M4 LINE L1 2926 3042 -3104 * 1233 107 0 0 chr11 121990147 121990306 -26793166 + L1PA10 LINE L1 6006 6164 -4 231 61 0 0 chr11 121990662 121990695 -26792777 + (TTTTTG)n Simple_repeat Simple_repeat 1 33 0 837 158 0 0 chr11 121990698 121990825 -26792647 - FLAM_C SINE Alu -16 127 1 429 298 82 1 chr11 121991046 121991216 -26792256 - MIR SINE MIR -66 196 16 2559 207 91 94 chr11 121991250 121991391 -26792081 - MER21B LTR ERV1 -1 862 722 180 0 0 0 chr11 121991391 121991411 -26792061 + (CAATT)n Simple_repeat Simple_repeat 2 21 0 2559 207 91 94 chr11 121991411 121992133 -26791339 - MER21B LTR ERV1 -141 722 1 2205 108 0 0 chr11 121992164 121992441 -26791031 + AluSq SINE Alu 14 290 -23 182 62 31 0 chr11 121992549 121992581 -26790891 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2063 118 0 7 chr11 121992584 121992864 -26790608 - AluSg SINE Alu -32 278 1 338 230 16 56 chr11 121992887 121993013 -26790459 - HAL1 LINE L1 -143 2364 2244 2043 112 0 37 chr11 121993138 121993434 -26790038 + AluSx SINE Alu 1 285 -27 28 29 0 0 chr11 121993434 121993469 -26790003 + AT_rich Low_complexity Low_complexity 1 35 0 1340 234 92 30 chr11 121993784 121994219 -26789253 - MLT1C LTR MaLR 0 467 6 2533 65 0 3 chr11 121994347 121994656 -26788816 - AluY SINE Alu -3 308 1 2212 116 0 7 chr11 121994656 121994957 -26788515 - AluSx SINE Alu -13 299 1 735 242 47 71 chr11 121995004 121995264 -26788208 - L1MC4a LINE L1 -1868 5940 5688 2354 101 0 3 chr11 121995264 121995571 -26787901 - AluSg SINE Alu -4 306 1 735 242 47 71 chr11 121995571 121995632 -26787840 - L1MC4a LINE L1 -2120 5688 5627 241 97 0 0 chr11 121995767 121995798 -26787674 + MER103 DNA DNA 2 32 -134 250 311 12 89 chr11 121996539 121996706 -26786766 - MIR3 SINE MIR -70 138 1 240 313 0 15 chr11 121997759 121997826 -26785646 + MIR SINE MIR 16 81 -127 329 300 62 71 chr11 121998425 121998665 -26784807 + MIR SINE MIR 15 252 -10 1985 127 45 3 chr11 121998671 121998962 -26784510 + AluSx SINE Alu 1 303 -9 318 206 0 0 chr11 121998962 121999035 -26784437 + (CATA)n Simple_repeat Simple_repeat 1 73 0 283 233 11 11 chr11 121999035 121999125 -26784347 - L1MC4 LINE L1 -1339 6703 6614 * 310 267 0 0 chr11 121999047 121999137 -26784335 + L1MC4 LINE L1 6614 6703 -1339 372 129 59 0 chr11 121999137 121999222 -26784250 + (TATG)n Simple_repeat Simple_repeat 4 93 0 1783 156 0 23 chr11 121999382 121999690 -26783782 - AluSx SINE Alu -11 301 1 297 0 0 0 chr11 121999768 121999801 -26783671 + (TG)n Simple_repeat Simple_repeat 1 33 0 2664 61 3 0 chr11 121999803 122000115 -26783357 - AluSp SINE Alu 0 313 1 480 257 5 86 chr11 122000590 122000777 -26782695 - MIR SINE MIR -14 248 77 299 263 0 0 chr11 122001092 122001172 -26782300 + MIR3 SINE MIR 120 199 -9 513 114 0 25 chr11 122001381 122001460 -26782012 - AluJ/FRAM SINE Alu -15 297 221 2272 106 0 0 chr11 122001799 122002101 -26781371 - AluSx SINE Alu -10 302 1 362 297 23 0 chr11 122002278 122002406 -26781066 + L1ME LINE L1 5561 5691 -430 550 282 55 6 chr11 122002675 122002856 -26780616 + MLT1L LTR MaLR 345 534 -81 309 282 35 21 chr11 122002938 122003080 -26780392 - L1ME LINE L1 -328 5793 5650 2104 105 3 7 chr11 122003109 122003431 -26780041 - AluSq SINE Alu 0 321 1 1283 162 5 0 chr11 122003930 122004128 -26779344 + AluJo SINE Alu 86 284 -28 207 100 0 0 chr11 122004447 122004477 -26778995 + (T)n Simple_repeat Simple_repeat 1 30 0 405 0 0 0 chr11 122004726 122004771 -26778701 + (TC)n Simple_repeat Simple_repeat 2 46 0 297 0 0 0 chr11 122004770 122004803 -26778669 + (TA)n Simple_repeat Simple_repeat 2 34 0 * 252 189 0 0 chr11 122004898 122004935 -26778537 + FRAM SINE Alu 73 109 -57 300 206 29 0 chr11 122004973 122005041 -26778431 + L1MCa LINE L1 1995 2064 -4362 616 230 64 16 chr11 122005045 122005232 -26778240 - AluSq SINE Alu -24 289 94 1502 91 43 0 chr11 122005335 122005544 -26777928 - AluSq SINE Alu -95 218 1 1711 172 27 3 chr11 122007925 122008222 -26775250 + AluJo SINE Alu 1 304 -8 198 310 138 0 chr11 122008820 122008907 -26774565 - L2 LINE L2 -6 3266 3168 292 269 119 15 chr11 122009817 122009951 -26773521 - MIR SINE MIR -10 252 105 467 135 18 99 chr11 122012401 122012512 -26770960 - MER69A DNA AcHobo 0 177 76 1691 158 33 4 chr11 122012516 122012788 -26770684 + AluSx SINE Alu 7 286 -26 421 202 24 0 chr11 122012809 122012893 -26770579 - MER69A DNA AcHobo -89 88 3 212 221 240 0 chr11 122013609 122013713 -26769759 + L2 LINE L2 1944 2072 -1242 541 218 8 16 chr11 122013720 122013844 -26769628 - L2 LINE L2 0 3313 3191 414 335 132 43 chr11 122013996 122014578 -26768894 + L2 LINE L2 2243 2876 -438 2425 87 3 0 chr11 122014610 122014909 -26768563 - AluSx SINE Alu -12 300 1 1232 246 131 67 chr11 122015218 122015687 -26767785 + MLT1H1 LTR MaLR 1 542 -7 756 292 44 53 chr11 122015707 122015790 -26767682 - L1 LINE L1 -1837 4309 4227 1583 153 10 61 chr11 122015790 122016085 -26767387 - AluJb SINE Alu -32 280 1 756 292 44 53 chr11 122016085 122016533 -26766939 - L1 LINE L1 -1919 4227 3811 369 313 46 5 chr11 122016595 122016790 -26766682 - HAL1 LINE L1 -946 1561 1359 263 251 145 43 chr11 122016795 122017002 -26766470 - L1MEd LINE L1 -4893 1226 999 2005 157 0 0 chr11 122017157 122017456 -26766016 - AluSx SINE Alu -13 299 1 38 0 0 0 chr11 122017460 122017498 -26765974 + AT_rich Low_complexity Low_complexity 1 38 0 2158 123 3 7 chr11 122017896 122018197 -26765275 + AluSx SINE Alu 1 300 -12 30 27 0 0 chr11 122018490 122018527 -26764945 + AT_rich Low_complexity Low_complexity 1 37 0 524 349 42 74 chr11 122018697 122019605 -26763867 + L2 LINE L2 1909 2787 -527 3300 167 52 14 chr11 122019776 122020007 -26763465 + L1MB7 LINE L1 5452 5673 -511 2346 113 0 0 chr11 122020007 122020318 -26763154 + AluSx SINE Alu 1 311 -1 3300 167 52 14 chr11 122020318 122020792 -26762680 + L1MB7 LINE L1 5673 6184 0 1844 201 0 0 chr11 122020803 122021096 -26762376 + AluJb SINE Alu 1 293 -19 1404 165 24 24 chr11 122021125 122021359 -26762113 + AluJo SINE Alu 1 237 -75 2226 133 36 30 chr11 122021359 122021721 -26761751 + THE1B LTR MaLR 1 364 0 1404 165 24 24 chr11 122021721 122021734 -26761738 + AluJo SINE Alu 236 248 -64 283 152 0 91 chr11 122022238 122022277 -26761195 + MIR SINE MIR 203 235 -27 2184 120 152 11 chr11 122022277 122022652 -26760820 + MSTA LTR MaLR 1 428 0 283 152 0 91 chr11 122022652 122022678 -26760794 + MIR SINE MIR 235 262 0 1277 255 97 65 chr11 122023110 122023699 -26759773 - MLT1L LTR MaLR -7 608 1 35 24 0 0 chr11 122023840 122023882 -26759590 + AT_rich Low_complexity Low_complexity 1 42 0 287 165 62 0 chr11 122023887 122023967 -26759505 - L1MC/D LINE L1 -864 5495 5410 1152 118 0 0 chr11 122023967 122024128 -26759344 - L1PA12 LINE L1 -51 6117 5957 1901 123 126 10 chr11 122024529 122024831 -26758641 + MER1B DNA MER1_type 1 337 0 339 282 99 38 chr11 122025171 122025302 -26758170 - MIR SINE MIR -118 144 6 21 0 0 0 chr11 122026124 122026145 -26757327 + AT_rich Low_complexity Low_complexity 1 21 0 733 121 53 193 chr11 122026613 122026820 -26756652 - MER5B DNA MER1_type 0 178 1 292 309 57 8 chr11 122031489 122031612 -26751860 - L2 LINE L2 -26 3287 3159 2049 138 7 3 chr11 122031754 122032052 -26751420 - AluSx SINE Alu -13 299 1 330 323 6 55 chr11 122032146 122032310 -26751162 + L2 LINE L2 3116 3271 -1 761 254 105 19 chr11 122033972 122034287 -26749185 + L1ME4a LINE L1 5513 5854 -267 391 219 130 0 chr11 122034335 122034481 -26748991 + L1ME4a LINE L1 5955 6119 -2 21 0 0 0 chr11 122034492 122034513 -26748959 + AT_rich Low_complexity Low_complexity 1 21 0 553 259 91 65 chr11 122034651 122034761 -26748711 + MIR SINE MIR 23 129 -133 2105 130 3 0 chr11 122034761 122035054 -26748418 + AluSx SINE Alu 1 294 -18 553 259 91 65 chr11 122035054 122035175 -26748297 + MIR SINE MIR 129 260 -2 266 283 81 30 chr11 122035564 122035663 -26747809 + L2 LINE L2 3169 3272 0 311 289 27 60 chr11 122035912 122036061 -26747411 - MIR SINE MIR -56 206 63 1519 151 0 0 chr11 122036107 122036339 -26747133 - AluJo SINE Alu -8 304 73 2013 153 0 7 chr11 122036339 122036639 -26746833 - AluSx SINE Alu -13 299 1 2358 68 0 0 chr11 122036649 122036978 -26746494 - AluY SINE Alu 0 330 2 662 264 87 35 chr11 122037034 122037265 -26746207 + MIR SINE MIR 2 244 -18 2447 63 7 0 chr11 122037399 122037700 -26745772 - AluSc SINE Alu -6 303 1 251 276 95 9 chr11 122038488 122038593 -26744879 + MIR3 SINE MIR 93 206 -2 214 283 212 0 chr11 122038895 122039008 -26744464 + MIR SINE MIR 126 262 0 1503 133 21 128 chr11 122039035 122039372 -26744100 - AluJo SINE Alu -1 301 1 365 206 0 0 chr11 122039373 122039441 -26744031 - AluJo/FLAM SINE Alu -187 115 48 224 305 9 29 chr11 122039578 122039683 -26743789 + L2 LINE L2 2725 2827 -487 1793 151 13 30 chr11 122039741 122040046 -26743426 + AluJo SINE Alu 13 312 0 696 326 73 65 chr11 122040069 122040370 -26743102 + L3 LINE CR1 907 1204 -373 1673 181 27 3 chr11 122040370 122040662 -26742810 + AluJb SINE Alu 1 299 -13 696 326 73 65 chr11 122040662 122040851 -26742621 + L3 LINE CR1 1204 1405 -172 1908 161 3 0 chr11 122040851 122041149 -26742323 + AluJb SINE Alu 1 299 -13 696 326 73 65 chr11 122041149 122041270 -26742202 + L3 LINE CR1 1405 1524 -53 1140 66 0 0 chr11 122041658 122041794 -26741678 + AluSq/x SINE Alu 1 136 -177 572 107 0 0 chr11 122041794 122041869 -26741603 + 5S rRNA rRNA 5 79 -42 2196 76 7 23 chr11 122041869 122042173 -26741299 + AluSq SINE Alu 1 299 -14 1981 84 56 21 chr11 122042300 122042586 -26740886 + AluSx SINE Alu 1 296 -16 1093 174 0 0 chr11 122042824 122042996 -26740476 + FRAM SINE Alu 1 169 -7 285 305 86 0 chr11 122043575 122043726 -26739746 - L1ME4a LINE L1 -12 6109 5946 1133 109 0 7 chr11 122043731 122043878 -26739594 - AluSc SINE Alu -72 237 92 1696 131 6 100 chr11 122044105 122044231 -26739241 + AluJb SINE Alu 1 137 -175 2405 109 0 0 chr11 122044231 122044544 -26738928 - AluSq SINE Alu 0 313 1 1696 131 6 100 chr11 122044544 122044737 -26738735 + AluJb SINE Alu 137 290 -22 2118 98 25 0 chr11 122044758 122045065 -26738407 + AluSx SINE Alu 1 314 0 189 0 0 0 chr11 122045418 122045439 -26738033 + (T)n Simple_repeat Simple_repeat 1 21 0 2203 104 3 23 chr11 122045575 122045884 -26737588 - AluSx SINE Alu -9 303 1 1527 40 0 6 chr11 122045979 122046156 -26737316 + AluY SINE Alu 129 304 -7 2043 98 3 23 chr11 122046672 122046979 -26736493 - AluSp SINE Alu -10 303 3 1102 149 11 0 chr11 122046982 122047157 -26736315 - AluJb SINE Alu -16 296 120 353 125 0 163 chr11 122047178 122047258 -26736214 + Alu SINE Alu 234 300 0 530 254 278 0 chr11 122047627 122047832 -26735640 + MIR SINE MIR 1 262 0 703 205 55 24 chr11 122048425 122048592 -26734880 - MER3 DNA MER1_type -55 154 1 351 337 56 61 chr11 122048722 122048918 -26734554 + MIR3 SINE MIR 14 208 0 219 262 131 24 chr11 122049676 122049760 -26733712 + MIR SINE MIR 48 140 -68 235 260 0 39 chr11 122050183 122050260 -26733212 + CT-rich Low_complexity Low_complexity 2 75 0 315 0 0 0 chr11 122050392 122050427 -26733045 + (TG)n Simple_repeat Simple_repeat 2 36 0 357 82 0 0 chr11 122050532 122050581 -26732891 + (TG)n Simple_repeat Simple_repeat 1 49 0 247 258 15 0 chr11 122051898 122051964 -26731508 + CT-rich Low_complexity Low_complexity 2 68 0 419 268 39 24 chr11 122054319 122054446 -26729026 - L2 LINE L2 -3 3269 3141 417 250 0 0 chr11 122054450 122054534 -26728938 + FLAM_A SINE Alu 1 84 -58 804 152 30 0 chr11 122054592 122054724 -26728748 + AluSg/x SINE Alu 107 242 -68 1702 165 10 16 chr11 122055015 122055318 -26728154 + AluJb SINE Alu 1 301 -11 327 25 0 0 chr11 122055319 122055359 -26728113 + (CA)n Simple_repeat Simple_repeat 2 41 0 201 240 20 0 chr11 122056072 122056122 -26727350 - L2 LINE L2 0 3313 3263 842 176 0 0 chr11 122056265 122056396 -26727076 - MER44D DNA MER2_type -3 602 600 1045 191 158 0 chr11 122056399 122056614 -26726858 - MER44D DNA MER2_type -374 331 83 2109 102 0 23 chr11 122056622 122056925 -26726547 - AluSx SINE Alu -16 296 1 294 95 0 0 chr11 122056956 122056998 -26726474 + (T)n Simple_repeat Simple_repeat 1 42 0 1925 141 3 0 chr11 122057216 122057514 -26725958 + AluJb SINE Alu 1 299 -13 201 74 0 0 chr11 122058157 122058184 -26725288 + (TTTAA)n Simple_repeat Simple_repeat 3 29 0 1857 129 21 0 chr11 122058184 122058464 -26725008 - AluJb SINE Alu -26 286 1 609 235 147 52 chr11 122059995 122060267 -26723205 + L1MCc LINE L1 921 1218 -5205 261 0 0 0 chr11 122060384 122060413 -26723059 + (TA)n Simple_repeat Simple_repeat 1 29 0 23 33 0 0 chr11 122060430 122060460 -26723012 + AT_rich Low_complexity Low_complexity 1 30 0 478 282 233 19 chr11 122060474 122060740 -26722732 - L3 LINE CR1 -468 1109 787 316 222 10 50 chr11 122060769 122060868 -26722604 - L2 LINE L2 0 3313 3219 509 327 174 20 chr11 122061223 122061666 -26721806 - L2 LINE L2 -626 2688 2178 * 632 286 79 31 chr11 122061647 122061874 -26721598 - MIR SINE MIR -4 258 21 357 356 96 32 chr11 122062065 122062713 -26720759 - L2 LINE L2 -1906 1408 720 833 142 15 8 chr11 122062819 122062953 -26720519 - AluJo SINE Alu -177 135 1 225 178 0 0 chr11 122063738 122063783 -26719689 + A-rich Low_complexity Low_complexity 3 47 0 1914 149 3 17 chr11 122064163 122064300 -26719172 + AluSx SINE Alu 1 138 -164 2166 105 0 13 chr11 122064300 122064436 -26719036 + AluSx SINE Alu 1 137 -175 2199 70 0 0 chr11 122064436 122064720 -26718752 + AluY SINE Alu 21 304 -7 2166 105 0 13 chr11 122064720 122064889 -26718583 + AluSx SINE Alu 137 302 -10 1914 149 3 17 chr11 122064889 122065046 -26718426 + AluSx SINE Alu 138 291 -11 288 266 37 131 chr11 122065619 122065833 -26717639 + MLT1K LTR MaLR 377 570 -18 499 211 11 0 chr11 122066928 122067023 -26716449 + Tigger7 DNA MER2_type 1 96 -637 2316 84 0 3 chr11 122067024 122067335 -26716137 + AluY SINE Alu 1 310 -1 2610 143 37 21 chr11 122067485 122067627 -26715845 + L1MB2 LINE L1 5652 5790 -381 324 0 0 0 chr11 122067627 122067663 -26715809 + (CA)n Simple_repeat Simple_repeat 2 37 0 2610 143 37 21 chr11 122067663 122068032 -26715440 + L1MB2 LINE L1 5790 6171 0 3851 168 18 65 chr11 122068032 122068137 -26715335 + L1MC4a LINE L1 6834 6942 -866 2191 106 0 0 chr11 122068137 122068429 -26715043 - AluSq SINE Alu -21 292 1 3851 168 18 65 chr11 122068429 122068524 -26714948 + L1MC4a LINE L1 6942 7040 -768 1740 160 3 20 chr11 122068524 122068817 -26714655 + AluJb SINE Alu 1 288 -24 3851 168 18 65 chr11 122068817 122069496 -26713976 + L1MC4a LINE L1 7040 7674 -134 8992 140 41 80 chr11 122069497 122071322 -26712150 + MER52A LTR ERV1 1 1755 0 421 208 92 8 chr11 122071322 122071452 -26712020 + L1MD3 LINE L1 7844 7984 -11 213 308 62 0 chr11 122071452 122071517 -26711955 + L3 LINE CR1 904 972 -605 2252 103 0 0 chr11 122071547 122071848 -26711624 - AluSx SINE Alu -10 302 2 2364 80 6 0 chr11 122071952 122072263 -26711209 + AluSq SINE Alu 1 313 0 564 193 58 76 chr11 122072300 122072471 -26711001 - MER5B DNA MER1_type -9 169 2 224 343 112 21 chr11 122072507 122072650 -26710822 - MER5B DNA MER1_type -8 170 15 583 209 203 0 chr11 122072671 122072819 -26710653 - MER5A DNA MER1_type 0 189 12 429 336 119 8 chr11 122072957 122073192 -26710280 + MIR SINE MIR 2 262 0 202 154 0 26 chr11 122073429 122073468 -26710004 - L2 LINE L2 0 3313 3276 242 227 93 27 chr11 122073757 122073832 -26709640 - L2 LINE L2 -231 3082 3003 2143 115 0 0 chr11 122073838 122074133 -26709339 + AluSx SINE Alu 1 295 -17 453 230 146 34 chr11 122074675 122074853 -26708619 + MIR SINE MIR 48 245 -17 332 311 112 74 chr11 122076469 122076781 -26706691 - L2 LINE L2 0 3272 2949 2140 101 0 3 chr11 122077112 122077399 -26706073 - AluSx SINE Alu -26 286 1 1253 119 21 0 chr11 122077399 122077593 -26705879 - L1MA3 LINE L1 -22 6283 6086 417 312 57 18 chr11 122077629 122078030 -26705442 + L1M4 LINE L1 3203 3619 -2527 255 136 0 0 chr11 122078032 122078076 -26705396 + L1MA3 LINE L1 6262 6305 0 321 254 110 25 chr11 122078078 122078196 -26705276 + L1M4 LINE L1 3600 3727 -2419 1938 118 70 53 chr11 122078227 122078513 -26704959 + THE1B LTR MaLR 3 298 -66 2009 140 0 0 chr11 122078513 122078806 -26704666 - AluSx SINE Alu -16 296 4 1938 118 70 53 chr11 122078806 122078875 -26704597 + THE1B LTR MaLR 298 364 0 457 271 18 18 chr11 122078875 122079045 -26704427 + L1M4 LINE L1 4518 4687 -1459 1331 160 42 42 chr11 122079077 122079184 -26704288 + AluJb SINE Alu 22 128 -184 2091 118 3 0 chr11 122079184 122079481 -26703991 + AluSg SINE Alu 1 298 -12 1331 160 42 42 chr11 122079481 122079660 -26703812 + AluJb SINE Alu 127 308 -4 1363 203 93 97 chr11 122079660 122079999 -26703473 + L1MC4a LINE L1 5821 6159 -1649 2178 81 3 3 chr11 122079999 122080283 -26703189 + AluSx SINE Alu 1 284 -28 1363 203 93 97 chr11 122080283 122080481 -26702991 + L1MC4a LINE L1 6159 6356 -1452 625 198 63 8 chr11 122080502 122080628 -26702844 - MER2 DNA MER2_type -6 339 207 3377 103 65 2 chr11 122080628 122081102 -26702370 - MER1A DNA MER1_type 0 529 26 1111 141 65 5 chr11 122081100 122081299 -26702173 - MER2 DNA MER2_type -132 213 3 * 1596 197 49 119 chr11 122081301 122081783 -26701689 + L1MC4 LINE L1 6364 6795 -1247 1491 118 9 26 chr11 122081783 122082012 -26701460 + AluJb SINE Alu 86 310 -2 1596 197 49 119 chr11 122082012 122082142 -26701330 + L1MC4 LINE L1 6795 6933 -1109 410 133 0 0 chr11 122082136 122082196 -26701276 + L1M3 LINE L1 5614 5673 -661 * 2234 113 3 0 chr11 122082197 122082506 -26700966 + AluSx SINE Alu 1 310 -2 270 0 0 0 chr11 122082637 122082667 -26700805 + (C)n Simple_repeat Simple_repeat 1 30 0 1159 137 0 0 chr11 122082921 122083096 -26700376 - AluJ SINE Alu -9 303 129 2353 45 0 3 chr11 122083103 122083395 -26700077 - AluY SINE Alu -20 291 1 1794 297 122 26 chr11 122083440 122084276 -26699196 + L2 LINE L2 1767 2682 -632 750 159 0 51 chr11 122084291 122084429 -26699043 - AluJ SINE Alu -180 132 2 851 273 188 22 chr11 122084430 122084976 -26698496 + L2 LINE L2 2690 3313 0 1996 116 3 31 chr11 122085450 122085769 -26697703 - AluSq SINE Alu -1 312 3 798 145 14 51 chr11 122085840 122085978 -26697494 + FLAM_C SINE Alu 1 133 0 1605 176 0 72 chr11 122086518 122086750 -26696722 + L1 LINE L1 4099 4295 -1851 1931 141 3 0 chr11 122086750 122087047 -26696425 - AluSx SINE Alu -14 298 1 1605 176 0 72 chr11 122087047 122087188 -26696284 + L1 LINE L1 4295 4445 -1701 1236 125 0 0 chr11 122087193 122087377 -26696095 + AluSg/x SINE Alu 120 303 -7 5380 133 46 29 chr11 122087380 122088833 -26694639 + L1PA16 LINE L1 4703 6166 0 22 0 0 0 chr11 122088886 122088908 -26694564 + AT_rich Low_complexity Low_complexity 1 22 0 538 327 114 22 chr11 122089074 122089389 -26694083 + L2 LINE L2 2567 2910 -404 1839 85 4 48 chr11 122089456 122089728 -26693744 + AluSq SINE Alu 1 260 -53 970 166 117 45 chr11 122089744 122089780 -26693692 - MER33 DNA MER1_type -2311 274 242 2312 84 0 3 chr11 122089780 122090077 -26693395 + AluSq SINE Alu 1 296 -17 970 166 117 45 chr11 122090077 122090306 -26693166 - MER33 DNA MER1_type -2343 242 1 528 291 38 91 chr11 122090306 122090625 -26692847 + L2 LINE L2 2911 3212 -60 895 97 13 58 chr11 122092640 122092794 -26690678 - L1MB5 LINE L1 -15 6159 6013 499 131 93 37 chr11 122093806 122093913 -26689559 - L1M4 LINE L1 -1144 5002 4890 198 313 101 0 chr11 122093999 122094098 -26689374 - L2 LINE L2 -1478 1836 1728 * 259 374 90 9 chr11 122094096 122094318 -26689154 - MIR SINE MIR -3 259 20 495 290 34 138 chr11 122094336 122094417 -26689055 - L2 LINE L2 -956 2358 2270 1962 96 36 10 chr11 122094417 122094718 -26688754 + AluSx SINE Alu 1 309 -3 495 290 34 138 chr11 122094718 122095406 -26688066 - L2 LINE L2 -1044 2270 1669 1418 95 0 38 chr11 122095709 122095920 -26687552 + AluSq SINE Alu 93 295 -18 2181 115 0 3 chr11 122096388 122096683 -26686789 - AluSg SINE Alu -15 295 2 1804 134 0 49 chr11 122096686 122096993 -26686479 - AluSx SINE Alu -20 292 1 24 0 0 0 chr11 122097234 122097258 -26686214 + AT_rich Low_complexity Low_complexity 1 24 0 933 226 102 43 chr11 122097453 122097776 -26685696 + MER2 DNA MER2_type 1 342 -2 1929 142 7 32 chr11 122097800 122098110 -26685362 - AluSx SINE Alu -10 302 1 28 0 0 0 chr11 122098158 122098186 -26685286 + AT_rich Low_complexity Low_complexity 1 28 0 591 231 150 6 chr11 122098263 122098436 -26685036 - MER58A DNA MER1_type -1 223 26 2109 112 20 0 chr11 122101070 122101364 -26682108 - AluY SINE Alu -11 300 1 2067 90 7 55 chr11 122101925 122102235 -26681237 + AluSx SINE Alu 1 295 -17 2202 99 14 0 chr11 122102584 122102877 -26680595 + AluSq SINE Alu 1 297 -16 2086 124 0 0 chr11 122103007 122103290 -26680182 + AluSx SINE Alu 1 283 -29 1655 88 14 5 chr11 122103608 122103824 -26679648 + AluSx SINE Alu 1 218 -94 345 236 0 14 chr11 122103976 122104048 -26679424 - MER69 DNA AcHobo -2455 71 1 2092 131 0 10 chr11 122104205 122104503 -26678969 + AluSx SINE Alu 1 295 -17 207 139 0 0 chr11 122104649 122104685 -26678787 + (TA)n Simple_repeat Simple_repeat 2 37 0 222 37 0 0 chr11 122104784 122104811 -26678661 + (A)n Simple_repeat Simple_repeat 1 27 0 2631 61 0 0 chr11 122105067 122105378 -26678094 - AluY SINE Alu 0 311 1 1873 146 3 48 chr11 122106290 122106606 -26676866 + AluJo SINE Alu 1 302 -10 2049 128 0 3 chr11 122107256 122107570 -26675902 + AluSp SINE Alu 2 314 0 225 0 0 0 chr11 122107737 122107762 -26675710 + (TAAAA)n Simple_repeat Simple_repeat 4 28 0 27 29 0 0 chr11 122107809 122107843 -26675629 + AT_rich Low_complexity Low_complexity 1 34 0 1986 204 74 62 chr11 122108005 122108570 -26674902 + L1M4 LINE L1 3756 4327 -1819 985 176 0 0 chr11 122108588 122108747 -26674725 + FAM SINE Alu 10 168 -17 2156 211 57 11 chr11 122108757 122109298 -26674174 + L1M4 LINE L1 4327 4892 -1254 2117 132 3 3 chr11 122109302 122109606 -26673866 + AluSx SINE Alu 1 304 -8 328 283 150 17 chr11 122109896 122110016 -26673456 + L2 LINE L2 3137 3272 0 1832 137 0 70 chr11 122110230 122110544 -26672928 - AluJo SINE Alu -16 296 5 517 198 30 0 chr11 122110885 122110986 -26672486 + MER97b DNA MER1_type? 58 161 -892 2210 112 0 0 chr11 122111561 122111857 -26671615 + AluY SINE Alu 1 296 -15 30 27 0 0 chr11 122111950 122111987 -26671485 + AT_rich Low_complexity Low_complexity 1 37 0 1528 147 4 20 chr11 122113125 122113286 -26670186 - AluJo SINE Alu -21 291 134 2274 88 3 7 chr11 122113286 122113608 -26669864 - AluSg SINE Alu 0 310 1 1528 147 4 20 chr11 122113608 122113691 -26669781 - AluJo SINE Alu -178 134 51 337 295 101 7 chr11 122113727 122113866 -26669606 - L2 LINE L2 -1 3312 3161 354 316 155 12 chr11 122113924 122114092 -26669380 - L2 LINE L2 -400 2914 2723 4149 148 75 21 chr11 122114122 122114362 -26669110 - L1MB7 LINE L1 0 6184 5958 2137 86 3 95 chr11 122114362 122114698 -26668774 + AluSp SINE Alu 3 307 -6 4149 148 75 21 chr11 122114698 122115256 -26668216 - L1MB7 LINE L1 -226 5958 5343 959 286 184 68 chr11 122115260 122115459 -26668013 - L2 LINE L2 -604 2710 2535 1436 67 0 0 chr11 122115459 122115637 -26667835 - L1PA8 LINE L1 0 6172 5995 2240 96 7 3 chr11 122115646 122115937 -26667535 - AluSg SINE Alu -18 292 1 959 286 184 68 chr11 122115937 122116565 -26666907 - L2 LINE L2 -786 2528 1776 2180 120 7 0 chr11 122116730 122117031 -26666441 + AluSx SINE Alu 1 303 -9 460 290 24 0 chr11 122117032 122117156 -26666316 + MIR3 SINE MIR 66 192 -16 2244 87 0 10 chr11 122117315 122117632 -26665840 + AluSx SINE Alu 1 314 0 989 247 184 93 chr11 122117644 122118572 -26664900 - L2 LINE L2 -2 3311 2273 21 0 0 0 chr11 122118580 122118601 -26664871 + AT_rich Low_complexity Low_complexity 1 21 0 2155 99 3 53 chr11 122119213 122119536 -26663936 + AluSx SINE Alu 3 309 -3 191 222 130 19 chr11 122119979 122120033 -26663439 + MIR SINE MIR 128 187 -75 188 332 179 20 chr11 122120053 122120249 -26663223 + L2 LINE L2 2397 2623 -691 313 331 50 16 chr11 122120249 122120370 -26663102 + L2 LINE L2 3139 3263 -9 228 346 126 6 chr11 122121365 122121539 -26661933 + MIR SINE MIR 30 223 -39 180 325 72 0 chr11 122121583 122121666 -26661806 + MIR SINE MIR 21 109 -153 22 0 0 0 chr11 122123271 122123293 -26660179 + AT_rich Low_complexity Low_complexity 1 22 0 271 320 10 40 chr11 122123501 122123601 -26659871 - MIR SINE MIR -69 139 43 195 269 0 50 chr11 122125393 122125484 -26657988 + MIR SINE MIR 102 186 -61 2294 97 7 3 chr11 122126078 122126377 -26657095 - AluSx SINE Alu -12 300 1 2387 84 3 0 chr11 122126386 122126682 -26656790 - AluSc SINE Alu -12 297 1 2666 238 37 1 chr11 122126716 122127364 -26656108 - L1MB7 LINE L1 -31 6153 5483 5596 132 60 21 chr11 122127397 122128302 -26655170 + Tigger1 DNA MER2_type 7 946 -1472 1701 135 36 18 chr11 122128304 122128585 -26654887 + Tigger1 DNA MER2_type 2118 2403 -15 183 245 0 61 chr11 122128701 122128750 -26654722 - L2 LINE L2 -65 3207 3162 186 143 0 0 chr11 122129122 122129157 -26654315 + (G)n Simple_repeat Simple_repeat 1 35 0 1076 213 94 12 chr11 122129173 122129502 -26653970 + Charlie4a DNA MER1_type 96 451 -57 2072 122 0 0 chr11 122129930 122130208 -26653264 - AluSx SINE Alu -32 280 3 23 33 0 0 chr11 122130387 122130417 -26653055 + AT_rich Low_complexity Low_complexity 1 30 0 2473 63 10 0 chr11 122130676 122130976 -26652496 - AluY SINE Alu -7 304 2 1954 132 0 40 chr11 122130980 122131283 -26652189 - AluSx SINE Alu -21 291 1 24 0 0 0 chr11 122131524 122131548 -26651924 + AT_rich Low_complexity Low_complexity 1 24 0 933 226 102 43 chr11 122131743 122132066 -26651406 + MER2 DNA MER2_type 1 342 -2 1929 142 7 32 chr11 122132090 122132400 -26651072 - AluSx SINE Alu -10 302 1 28 0 0 0 chr11 122132448 122132476 -26650996 + AT_rich Low_complexity Low_complexity 1 28 0 591 231 150 6 chr11 122132553 122132726 -26650746 - MER58A DNA MER1_type -1 223 26 2118 112 20 0 chr11 122135361 122135656 -26647816 - AluY SINE Alu -10 301 1 2067 90 7 55 chr11 122136217 122136527 -26646945 + AluSx SINE Alu 1 295 -17 2193 99 14 0 chr11 122136877 122137169 -26646303 + AluSq SINE Alu 1 296 -17 2086 124 0 0 chr11 122137299 122137582 -26645890 + AluSx SINE Alu 1 283 -29 2506 71 10 3 chr11 122137900 122138211 -26645261 + AluSq SINE Alu 1 313 0 30 0 0 0 chr11 122138211 122138241 -26645231 + AT_rich Low_complexity Low_complexity 1 30 0 2072 122 0 0 chr11 122139467 122139745 -26643727 - AluSx SINE Alu -32 280 3 23 33 0 0 chr11 122139924 122139954 -26643518 + AT_rich Low_complexity Low_complexity 1 30 0 1755 128 4 11 chr11 122140212 122140493 -26642979 - AluSc SINE Alu -7 302 24 2691 166 4 17 chr11 122140494 122140965 -26642507 - L1M3 LINE L1 -359 5824 5360 1351 184 88 46 chr11 122140973 122141256 -26642216 - AluJo SINE Alu -17 295 1 325 308 97 47 chr11 122141258 122141545 -26641927 + L1 LINE L1 4226 4534 -1612 2449 75 0 0 chr11 122141545 122141839 -26641633 + AluSx SINE Alu 1 294 -18 325 308 97 47 chr11 122141839 122141892 -26641580 + L1 LINE L1 4534 4583 -1563 6883 159 11 12 chr11 122141892 122143161 -26640311 + L1 LINE L1 4133 5400 -746 489 146 0 37 chr11 122143176 122143191 -26640281 + AluSq SINE Alu 121 135 -178 799 147 31 23 chr11 122143191 122143320 -26640152 + FLAM_C SINE Alu 1 130 -3 489 146 0 37 chr11 122143320 122143386 -26640086 + AluSq SINE Alu 135 199 -114 13059 84 9 24 chr11 122143389 122144542 -26638930 + Charlie3 DNA MER1_type 599 1718 -988 2385 92 3 0 chr11 122144542 122144848 -26638624 - AluSc SINE Alu -2 307 1 13059 84 9 24 chr11 122144848 122145480 -26637992 + Charlie3 DNA MER1_type 1718 2358 -348 2811 177 77 4 chr11 122145482 122145990 -26637482 - L1M2 LINE L1 -6304 545 1 610 296 102 14 chr11 122146018 122146349 -26637123 - L1M4 LINE L1 -3388 2758 2458 1562 177 17 33 chr11 122146349 122146648 -26636824 - AluJo SINE Alu -18 294 1 610 296 102 14 chr11 122146648 122146873 -26636599 - L1M4 LINE L1 -3688 2458 2153 2369 73 3 13 chr11 122147275 122147575 -26635897 + AluSp SINE Alu 3 299 -14 2022 139 0 0 chr11 122147748 122148042 -26635430 + AluSx SINE Alu 1 294 -18 297 0 0 0 chr11 122148329 122148362 -26635110 + (TC)n Simple_repeat Simple_repeat 2 34 0 2125 121 0 0 chr11 122148379 122148661 -26634811 - AluSg SINE Alu -24 286 5 2246 114 10 0 chr11 122149049 122149346 -26634126 + AluSq SINE Alu 1 300 -13 2359 101 3 0 chr11 122149961 122150269 -26633203 + AluSc SINE Alu 1 309 0 21 0 0 0 chr11 122150493 122150514 -26632958 + AT_rich Low_complexity Low_complexity 1 21 0 2246 89 24 0 chr11 122150706 122150999 -26632473 + AluSx SINE Alu 1 300 -12 2176 130 0 9 chr11 122151205 122151520 -26631952 + AluSx SINE Alu 1 312 0 2372 98 0 3 chr11 122151873 122152179 -26631293 + AluSq SINE Alu 1 305 -8 325 344 0 0 chr11 122152182 122152272 -26631200 - L2 LINE L2 -25 3288 3199 837 189 55 0 chr11 122152472 122152636 -26630836 + AluJo SINE Alu 1 173 -139 2410 95 0 0 chr11 122153177 122153482 -26629990 + AluSg SINE Alu 1 305 -5 238 258 106 45 chr11 122153729 122153861 -26629611 - MIR SINE MIR -56 206 67 198 0 0 0 chr11 122153914 122153936 -26629536 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 469 319 96 25 chr11 122154231 122154513 -26628959 + L2 LINE L2 2141 2442 -872 1505 162 5 13 chr11 122154521 122154880 -26628592 + Tigger2a DNA MER2_type 1 444 0 543 339 122 0 chr11 122154906 122155275 -26628197 + L2 LINE L2 2493 2906 -408 263 236 45 67 chr11 122155993 122156082 -26627390 - MIR SINE MIR -49 213 127 581 254 166 0 chr11 122157577 122157746 -26625726 - MIR SINE MIR -64 198 2 2172 110 3 0 chr11 122158412 122158738 -26624734 - AluSx SINE Alu 0 328 2 1777 152 16 29 chr11 122158742 122159058 -26624414 - AluJo SINE Alu 0 312 1 2311 109 0 0 chr11 122159208 122159511 -26623961 - AluSq SINE Alu -10 303 1 472 278 54 37 chr11 122161001 122161216 -26622256 - MLT1I LTR MaLR -150 259 46 2178 100 3 34 chr11 122162021 122162342 -26621130 + AluSx SINE Alu 1 311 -1 2202 112 7 3 chr11 122162521 122162824 -26620648 - AluSx SINE Alu -8 304 1 234 0 0 0 chr11 122163611 122163637 -26619835 + (TA)n Simple_repeat Simple_repeat 2 27 0 2205 109 10 3 chr11 122163641 122163952 -26619520 - AluSq SINE Alu 0 313 1 240 319 6 24 chr11 122164268 122164434 -26619038 - AluSg/x SINE Alu -19 283 121 2260 114 3 0 chr11 122164611 122164917 -26618555 - AluSg SINE Alu -3 307 1 35 0 0 0 chr11 122165213 122165248 -26618224 + AT_rich Low_complexity Low_complexity 1 35 0 2179 115 0 0 chr11 122165248 122165536 -26617936 - AluSx SINE Alu -24 288 1 2171 104 0 10 chr11 122165549 122165837 -26617635 - AluSx SINE Alu -27 285 1 718 269 134 25 chr11 122166188 122166553 -26616919 - L1MEd LINE L1 -5294 825 421 2030 100 0 21 chr11 122166592 122166882 -26616590 - AluY SINE Alu -20 291 8 2305 103 0 7 chr11 122166921 122167223 -26616249 - AluSx SINE Alu -12 300 1 452 229 0 10 chr11 122167636 122167732 -26615740 - AluSg/x SINE Alu -12 300 206 220 322 0 0 chr11 122168631 122168690 -26614782 + GA-rich Low_complexity Low_complexity 1 59 0 321 284 136 30 chr11 122169135 122169304 -26614168 + MIR3 SINE MIR 11 197 -11 2243 102 0 0 chr11 122169318 122169613 -26613859 - AluSx SINE Alu -17 295 1 215 299 158 49 chr11 122169691 122169875 -26613597 - L2 LINE L2 -455 2859 2656 1360 217 71 0 chr11 122170650 122170768 -26612704 + AluJo SINE Alu 1 109 -203 216 0 0 0 chr11 122170768 122170792 -26612680 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1360 217 71 0 chr11 122170792 122170954 -26612518 + AluJo SINE Alu 109 301 -11 2187 143 9 26 chr11 122171797 122172146 -26611326 - MER2 DNA MER2_type -1 343 1 25 75 0 0 chr11 122173032 122173085 -26610387 + AT_rich Low_complexity Low_complexity 1 53 0 860 209 13 0 chr11 122174021 122174179 -26609293 + FRAM SINE Alu 8 167 -9 2331 109 3 6 chr11 122174188 122174501 -26608971 - AluSx SINE Alu 0 312 1 21 0 0 0 chr11 122174870 122174891 -26608581 + AT_rich Low_complexity Low_complexity 1 21 0 2009 145 0 3 chr11 122174977 122175266 -26608206 + AluSx SINE Alu 1 288 -24 272 277 142 27 chr11 122177314 122177462 -26606010 - L2 LINE L2 -1077 2237 2073 412 304 27 34 chr11 122177489 122177637 -26605835 - MIR SINE MIR -73 189 43 407 256 200 31 chr11 122178042 122178202 -26605270 - MER5A DNA MER1_type -2 187 1 512 271 54 68 chr11 122178391 122178612 -26604860 - MIR SINE MIR -43 219 2 2214 96 3 16 chr11 122178671 122178974 -26604498 - AluSq SINE Alu -14 299 1 206 233 28 50 chr11 122180320 122180401 -26603071 - MIR3 SINE MIR -49 159 98 797 294 120 12 chr11 122180553 122180767 -26602705 + L2 LINE L2 2842 3031 -282 1031 204 92 43 chr11 122180767 122181095 -26602377 + MER2 DNA MER2_type 1 344 0 797 294 120 12 chr11 122181095 122181305 -26602167 + L2 LINE L2 3031 3312 -1 2843 7 0 0 chr11 122181936 122182240 -26601232 - AluYa5 SINE Alu -7 304 1 7692 40 5 6 chr11 122182683 122183618 -26599854 + L1PA5 LINE L1 5213 6146 -8 2506 63 0 3 chr11 122185014 122185313 -26598159 - AluY SINE Alu -13 298 1 231 164 49 33 chr11 122186433 122186494 -26596978 - L1P1 LINE L1 -299 5856 5795 1121 188 42 5 chr11 122186518 122186731 -26596741 - L1MB3 LINE L1 -8 6175 5955 206 305 143 9 chr11 122187343 122187448 -26596024 + L3 LINE CR1 556 674 -903 877 149 15 0 chr11 122187470 122187604 -26595868 + AluJo SINE Alu 1 136 -176 325 360 92 29 chr11 122187702 122188352 -26595120 + L2 LINE L2 711 1401 -1913 617 294 83 28 chr11 122188549 122188767 -26594705 + MIR SINE MIR 21 250 -12 425 337 167 15 chr11 122188756 122189157 -26594315 + L2 LINE L2 2178 2639 -675 * 273 197 0 33 chr11 122189595 122189656 -26593816 + L2 LINE L2 3214 3272 0 260 296 45 18 chr11 122189740 122189963 -26593509 + L1ME LINE L1 3205 3433 -2713 307 100 0 0 chr11 122189967 122190007 -26593465 + Alu SINE Alu 1 40 -260 687 183 0 15 chr11 122190007 122190138 -26593334 + FLAM_C SINE Alu 11 139 -4 842 52 0 0 chr11 122190164 122190261 -26593211 - AluY SINE Alu -11 300 204 278 263 12 0 chr11 122190378 122190458 -26593014 + L1ME LINE L1 5319 5399 -2409 1391 135 8 62 chr11 122190473 122190717 -26592755 + AluJb SINE Alu 1 231 -81 533 286 44 48 chr11 122190740 122191005 -26592467 + L1ME LINE L1 5443 5665 -456 292 312 115 13 chr11 122191006 122191163 -26592309 - MIR SINE MIR -10 252 80 233 203 94 0 chr11 122191260 122191324 -26592148 + L1ME LINE L1 5836 5905 -216 654 174 0 0 chr11 122191365 122191457 -26592015 + AluJ/FLAM SINE Alu 2 93 -219 1755 122 0 20 chr11 122191558 122191812 -26591660 - AluSq SINE Alu -64 249 1 25 0 0 0 chr11 122191887 122191912 -26591560 + AT_rich Low_complexity Low_complexity 1 25 0 1975 144 3 0 chr11 122191994 122192285 -26591187 + AluSx SINE Alu 1 292 -20 189 0 0 0 chr11 122192285 122192306 -26591166 + (GA)n Simple_repeat Simple_repeat 2 22 0 991 185 17 12 chr11 122193605 122193730 -26589742 + AluJo SINE Alu 1 129 -183 399 41 0 0 chr11 122193730 122193779 -26589693 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 991 185 17 12 chr11 122193779 122193826 -26589646 + AluJo SINE Alu 129 174 -138 815 313 90 44 chr11 122193890 122194607 -26588865 - L2 LINE L2 0 3313 2554 2184 112 0 25 chr11 122194607 122194921 -26588551 + AluSx SINE Alu 1 306 -6 815 313 90 44 chr11 122194921 122195037 -26588435 - L2 LINE L2 -759 2554 2445 374 175 13 79 chr11 122195043 122195119 -26588353 + AluS SINE Alu 1 63 -239 382 155 0 0 chr11 122195370 122195428 -26588044 - MER31A LTR ERV1 -75 410 353 3420 169 10 8 chr11 122196215 122197139 -26586333 - L1M1 LINE L1 -639 5661 4741 2338 93 0 19 chr11 122197568 122197881 -26585591 + AluSc SINE Alu 1 307 -2 25 31 0 0 chr11 122198926 122198958 -26584514 + AT_rich Low_complexity Low_complexity 1 32 0 3877 49 0 0 chr11 122199608 122200053 -26583419 + L1PA7 LINE L1 5706 6150 -4 265 306 20 20 chr11 122200314 122200412 -26583060 + L2 LINE L2 2962 3059 -213 342 0 0 0 chr11 122200653 122200691 -26582781 + (CA)n Simple_repeat Simple_repeat 1 38 0 2198 108 0 10 chr11 122202454 122202751 -26580721 + AluSx SINE Alu 19 312 0 255 61 0 0 chr11 122202982 122203015 -26580457 + (T)n Simple_repeat Simple_repeat 1 33 0 3848 134 11 4 chr11 122203023 122203576 -26579896 + MER41D LTR ERV1 1 557 0 228 250 19 0 chr11 122203970 122204022 -26579450 + MIR SINE MIR 69 121 -141 24 0 0 0 chr11 122204040 122204064 -26579408 + AT_rich Low_complexity Low_complexity 1 24 0 2097 108 31 7 chr11 122204064 122204351 -26579121 + AluSx SINE Alu 1 294 -18 392 250 2 0 chr11 122204454 122204533 -26578939 - AluJ/FLAM SINE Alu -238 64 1 9531 165 21 26 chr11 122204533 122206459 -26577013 - L1M1 LINE L1 -1450 4696 2781 1016 170 16 27 chr11 122206460 122206648 -26576824 + AluJb SINE Alu 107 292 -20 3745 60 27 0 chr11 122206816 122207265 -26576207 - L1PA7 LINE L1 -2 6152 5692 1181 104 5 108 chr11 122207291 122207376 -26576096 - LTR36 LTR ERV1 0 611 519 2625 55 3 0 chr11 122207376 122207686 -26575786 + AluY SINE Alu 1 311 0 1181 104 5 108 chr11 122207686 122207812 -26575660 - LTR36 LTR ERV1 -92 519 422 999 95 17 50 chr11 122207811 122207990 -26575482 - LTR36 LTR ERV1 -438 173 1 * 415 229 53 76 chr11 122207996 122208127 -26575345 + MER41D LTR ERV1 360 487 -70 671 275 4 116 chr11 122208228 122208460 -26575012 + L1M4 LINE L1 3520 3666 -2480 1784 150 7 7 chr11 122208460 122208740 -26574732 + AluJo SINE Alu 12 291 -21 671 275 4 116 chr11 122208740 122209016 -26574456 + L1M4 LINE L1 3666 3971 -2175 2486 77 0 10 chr11 122209020 122209331 -26574141 + AluSc SINE Alu 1 308 -1 222 218 46 0 chr11 122209373 122209460 -26574012 + (TA)n Simple_repeat Simple_repeat 2 92 0 856 286 91 63 chr11 122209501 122210261 -26573211 + L1M4 LINE L1 4056 4836 -1310 2230 159 0 33 chr11 122210356 122210747 -26572725 - L1MB2 LINE L1 -7 6164 5787 339 191 16 0 chr11 122210749 122210812 -26572660 - MER34 LTR ERV1 -4 538 475 813 99 116 16 chr11 122211124 122211245 -26572227 - FLAM_C SINE Alu 0 133 1 2450 76 0 3 chr11 122211421 122211723 -26571749 - AluY SINE Alu -10 301 1 23 33 0 0 chr11 122213481 122213511 -26569961 + AT_rich Low_complexity Low_complexity 1 30 0 2129 116 0 0 chr11 122213585 122213879 -26569593 - AluSc SINE Alu -15 294 1 2168 109 16 3 chr11 122213887 122214190 -26569282 - AluSx SINE Alu -5 307 1 392 314 47 24 chr11 122214226 122214395 -26569077 - MER5A DNA MER1_type -2 187 15 479 260 91 0 chr11 122215103 122215257 -26568215 + L2 LINE L2 2235 2402 -912 217 132 0 26 chr11 122215259 122215297 -26568175 + (TCC)n Simple_repeat Simple_repeat 3 39 0 516 168 24 16 chr11 122215297 122215422 -26568050 + CT-rich Low_complexity Low_complexity 2 127 0 590 172 115 25 chr11 122215452 122215574 -26567898 - FLAM_A SINE Alu 0 133 1 1271 259 166 21 chr11 122215598 122215713 -26567759 + L2 LINE L2 2393 2490 -823 2012 161 3 0 chr11 122215713 122216012 -26567460 + AluJo SINE Alu 1 300 -12 1271 259 166 21 chr11 122216012 122216579 -26566893 + L2 LINE L2 2490 3168 -145 984 207 0 0 chr11 122216624 122216788 -26566684 + FRAM SINE Alu 2 165 -1 229 217 0 22 chr11 122216948 122216994 -26566478 - AluJ/monomer SINE Alu -256 46 2 2350 69 0 10 chr11 122217115 122217404 -26566068 + AluSq SINE Alu 1 286 -27 191 36 36 0 chr11 122217404 122217432 -26566040 + (TA)n Simple_repeat Simple_repeat 1 29 0 842 208 227 37 chr11 122218248 122218666 -26564806 + MLT1F LTR MaLR 60 542 0 339 306 19 0 chr11 122218772 122218880 -26564592 + L2 LINE L2 2553 2662 -652 2150 129 0 3 chr11 122219378 122219687 -26563785 + AluSx SINE Alu 1 308 -4 2291 88 3 3 chr11 122220522 122220818 -26562654 + AluSc SINE Alu 1 296 -13 363 339 61 24 chr11 122220885 122221050 -26562422 + MIR SINE MIR 18 188 -74 21 0 0 0 chr11 122222093 122222114 -26561358 + AT_rich Low_complexity Low_complexity 1 21 0 183 42 0 0 chr11 122223619 122223643 -26559829 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 684 89 44 11 chr11 122223645 122223735 -26559737 - FRAM SINE Alu -30 146 54 265 64 64 0 chr11 122223898 122223945 -26559527 + T-rich Low_complexity Low_complexity 3 52 0 245 128 21 0 chr11 122223944 122223991 -26559481 + C-rich Low_complexity Low_complexity 3 50 0 * 490 333 44 0 chr11 122224383 122224542 -26558930 + MIR3 SINE MIR 33 198 -10 614 156 147 9 chr11 122224711 122224820 -26558652 + FLAM_C SINE Alu 2 125 -18 22 0 0 0 chr11 122224845 122224867 -26558605 + AT_rich Low_complexity Low_complexity 1 22 0 2235 104 16 0 chr11 122226194 122226502 -26556970 + AluSq SINE Alu 1 313 0 187 253 76 63 chr11 122227587 122227666 -26555806 - L2 LINE L2 -8 3264 3185 22 0 0 0 chr11 122227723 122227745 -26555727 + AT_rich Low_complexity Low_complexity 1 22 0 2586 143 39 10 chr11 122228025 122228437 -26555035 + MSTB LTR MaLR 3 426 0 200 207 33 0 chr11 122228627 122228694 -26554778 - MIR SINE MIR -62 146 104 225 218 0 73 chr11 122228940 122228995 -26554477 - L2 LINE L2 -10 3262 3212 21 0 0 0 chr11 122229281 122229302 -26554170 + GC_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 122229309 122229337 -26554135 + GC_rich Low_complexity Low_complexity 1 28 0 502 186 128 10 chr11 122229887 122229989 -26553483 + FLAM_A SINE Alu 3 116 -17 7774 45 0 3 chr11 122229997 122231474 -26551998 - L1PA6 LINE L1 0 6154 4684 380 213 0 13 chr11 122231794 122231869 -26551603 - L2 LINE L2 0 3313 3240 281 314 12 0 chr11 122232174 122232260 -26551212 - MIR3 SINE MIR -40 168 82 22 0 0 0 chr11 122232399 122232421 -26551051 + AT_rich Low_complexity Low_complexity 1 22 0 1234 154 85 97 chr11 122232474 122232793 -26550679 + MLT1B LTR MaLR 76 390 0 500 335 164 15 chr11 122234197 122234603 -26548869 - L2 LINE L2 -12 3260 2784 4219 113 28 5 chr11 122236118 122236685 -26546787 + LTR19B LTR ERV1 1 580 0 1267 169 14 5 chr11 122237501 122237720 -26545752 - L1PA16 LINE L1 -1 6165 5945 241 257 44 147 chr11 122237926 122237975 -26545497 + L2 LINE L2 3136 3188 -84 1962 158 7 0 chr11 122237975 122238285 -26545187 + AluJb SINE Alu 1 312 0 241 257 44 147 chr11 122238285 122238371 -26545101 + L2 LINE L2 3188 3257 -15 613 233 116 6 chr11 122238793 122238965 -26544507 - MER117 DNA MER1_type -1 196 6 289 314 170 21 chr11 122239091 122239233 -26544239 + MIR SINE MIR 31 193 -65 2532 151 19 30 chr11 122239674 122240033 -26543439 + MSTB LTR MaLR 1 356 -70 2196 119 0 0 chr11 122240033 122240374 -26543098 - AluSc SINE Alu 0 309 1 2532 151 19 30 chr11 122240374 122240445 -26543027 + MSTB LTR MaLR 356 426 0 2304 99 0 6 chr11 122241354 122241666 -26541806 + AluSx SINE Alu 1 310 -2 591 241 63 13 chr11 122242198 122242356 -26541116 - L2 LINE L2 0 3313 3148 2496 84 3 0 chr11 122242360 122242671 -26540801 + AluSp SINE Alu 1 312 -1 1853 228 72 61 chr11 122242777 122243303 -26540169 + MER77 LTR ERV1 1 532 -73 880 143 0 0 chr11 122243323 122243449 -26540023 - FLAM_C SINE Alu -17 126 1 366 279 0 0 chr11 122243451 122243519 -26539953 + MER77 LTR ERV1 538 605 0 381 264 56 1 chr11 122243860 122243994 -26539478 + L1ME LINE L1 58 195 -5924 4799 125 35 16 chr11 122244056 122244450 -26539022 + L1MB4 LINE L1 5376 5761 -419 297 0 0 0 chr11 122244450 122244483 -26538989 + (TG)n Simple_repeat Simple_repeat 2 34 0 4799 125 35 16 chr11 122244483 122244878 -26538594 + L1MB4 LINE L1 5761 6180 0 1229 181 100 29 chr11 122244877 122245019 -26538453 - L1MD2 LINE L1 -55 6304 6174 * 267 31 0 0 chr11 122245019 122245051 -26538421 + (TG)n Simple_repeat Simple_repeat 2 33 0 1229 181 100 29 chr11 122245051 122245189 -26538283 - L1MD2 LINE L1 -185 6174 6004 343 251 153 71 chr11 122245390 122245691 -26537781 + L1ME LINE L1 604 918 -5201 1176 262 13 78 chr11 122245692 122246231 -26537241 + L1M4 LINE L1 3498 4001 -2145 3180 126 144 15 chr11 122246241 122246844 -26536628 + L1MC2 LINE L1 5659 6339 -5 1679 256 92 23 chr11 122247242 122247541 -26535931 + L1M4 LINE L1 4016 4293 -1853 2069 129 0 26 chr11 122247541 122247844 -26535628 + AluSx SINE Alu 1 295 -17 1679 256 92 23 chr11 122247844 122248320 -26535152 + L1M4 LINE L1 4293 4844 -1302 282 327 24 18 chr11 122248337 122248502 -26534970 + L1M4 LINE L1 5039 5204 -942 22 35 0 0 chr11 122248522 122248551 -26534921 + AT_rich Low_complexity Low_complexity 1 29 0 1747 195 138 10 chr11 122248593 122249080 -26534392 + L1M4 LINE L1 4103 4651 -1495 559 214 50 0 chr11 122249051 122249191 -26534281 + L1MA9 LINE L1 5126 5272 -874 * 961 112 0 0 chr11 122249202 122249327 -26534145 - FLAM_C SINE Alu -18 125 1 423 100 0 0 chr11 122249328 122249398 -26534074 + L1MA9 LINE L1 5262 5331 -849 1168 143 59 36 chr11 122249398 122249720 -26533752 + SVA Other Other 440 813 -573 201 39 0 0 chr11 122249826 122249852 -26533620 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 278 119 0 0 chr11 122249859 122249901 -26533571 + L1MA9 LINE L1 5316 5357 -811 874 135 0 8 chr11 122249905 122250031 -26533441 + FLAM_C SINE Alu 1 125 -18 1700 171 6 16 chr11 122250045 122250360 -26533112 + AluJo SINE Alu 1 312 0 4158 206 19 23 chr11 122250369 122250602 -26532870 + L1MA9 LINE L1 5372 5605 -707 2786 119 13 59 chr11 122250602 122250839 -26532633 - Tigger2a DNA MER2_type -2274 434 226 2162 109 27 0 chr11 122250839 122251132 -26532340 + AluSq SINE Alu 1 301 -12 2786 119 13 59 chr11 122251132 122251349 -26532123 - Tigger2a DNA MER2_type -2482 226 1 4158 206 19 23 chr11 122251349 122251650 -26531822 + L1MA9 LINE L1 5605 5906 -406 2356 98 3 0 chr11 122251650 122251956 -26531516 + AluSx SINE Alu 1 307 -5 4158 206 19 23 chr11 122251956 122252335 -26531137 + L1MA9 LINE L1 5906 6282 -30 316 138 40 5 chr11 122252566 122252634 -26530838 - Alu SINE Alu -257 46 1 817 307 242 12 chr11 122252635 122253238 -26530234 - L2 LINE L2 -797 2517 1776 2180 120 7 0 chr11 122253403 122253704 -26529768 + AluSx SINE Alu 1 303 -9 460 290 24 0 chr11 122253705 122253829 -26529643 + MIR3 SINE MIR 66 192 -16 2244 87 0 10 chr11 122253988 122254305 -26529167 + AluSx SINE Alu 1 314 0 1016 247 184 91 chr11 122254317 122255244 -26528228 - L2 LINE L2 -2 3311 2273 21 0 0 0 chr11 122255252 122255273 -26528199 + AT_rich Low_complexity Low_complexity 1 21 0 2155 99 3 53 chr11 122255885 122256208 -26527264 + AluSx SINE Alu 3 309 -3 191 222 130 19 chr11 122256651 122256705 -26526767 + MIR SINE MIR 128 187 -75 188 332 179 20 chr11 122256725 122256921 -26526551 + L2 LINE L2 2397 2623 -691 313 331 50 16 chr11 122256921 122257042 -26526430 + L2 LINE L2 3139 3263 -9 204 353 126 6 chr11 122258037 122258211 -26525261 + MIR SINE MIR 30 223 -39 180 325 72 0 chr11 122258255 122258338 -26525134 + MIR SINE MIR 21 109 -153 22 0 0 0 chr11 122259943 122259965 -26523507 + AT_rich Low_complexity Low_complexity 1 22 0 271 320 10 40 chr11 122260173 122260273 -26523199 - MIR SINE MIR -69 139 43 195 269 0 50 chr11 122262066 122262157 -26521315 + MIR SINE MIR 102 186 -61 2339 91 7 3 chr11 122262751 122263047 -26520425 - AluSg SINE Alu -13 297 1 2407 74 0 7 chr11 122263056 122263355 -26520117 - AluSc SINE Alu -12 297 1 287 141 138 52 chr11 122263359 122263417 -26520055 - L1MB7 LINE L1 0 6178 6117 1652 118 17 112 chr11 122263420 122263777 -26519695 - L1MB7 LINE L1 -192 5992 5670 289 146 0 0 chr11 122264192 122264233 -26519239 + Alu SINE Alu 1 41 -261 2176 130 0 9 chr11 122264285 122264600 -26518872 + AluSx SINE Alu 1 312 0 2364 98 0 3 chr11 122264953 122265258 -26518214 + AluSq SINE Alu 1 304 -9 325 344 0 0 chr11 122265261 122265351 -26518121 - L2 LINE L2 -25 3288 3199 837 189 55 0 chr11 122265551 122265715 -26517757 + AluJo SINE Alu 1 173 -139 2382 98 0 0 chr11 122266256 122266561 -26516911 + AluSg SINE Alu 1 305 -5 238 258 106 45 chr11 122266808 122266940 -26516532 - MIR SINE MIR -56 206 67 198 0 0 0 chr11 122266993 122267015 -26516457 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 466 319 99 28 chr11 122267310 122267592 -26515880 + L2 LINE L2 2141 2442 -872 1505 162 5 13 chr11 122267600 122267959 -26515513 + Tigger2a DNA MER2_type 1 444 0 543 339 122 0 chr11 122267985 122268354 -26515118 + L2 LINE L2 2493 2906 -408 263 236 45 67 chr11 122269072 122269161 -26514311 - MIR SINE MIR -49 213 127 581 254 166 0 chr11 122270658 122270827 -26512645 - MIR SINE MIR -64 198 2 2181 109 3 0 chr11 122271493 122271819 -26511653 - AluSx SINE Alu 0 327 1 230 139 23 0 chr11 122271820 122271863 -26511609 - L1M4 LINE L1 -945 5201 5158 1128 161 58 15 chr11 122271888 122272093 -26511379 + AluJo SINE Alu 85 298 -14 446 209 12 0 chr11 122272096 122272182 -26511290 - L1MD2 LINE L1 -15 6344 6258 3171 208 39 34 chr11 122272200 122272480 -26510992 - L1M4 LINE L1 -990 5156 4879 2098 127 0 0 chr11 122272480 122272763 -26510709 - AluSx SINE Alu -29 283 1 3171 208 39 34 chr11 122272763 122273308 -26510164 - L1M4 LINE L1 -1267 4879 4327 985 176 0 0 chr11 122273318 122273477 -26509995 - FAM SINE Alu -17 168 10 1986 204 74 62 chr11 122273495 122274060 -26509412 - L1M4 LINE L1 -1819 4327 3756 27 29 0 0 chr11 122274222 122274256 -26509216 + AT_rich Low_complexity Low_complexity 1 34 0 225 0 0 0 chr11 122274303 122274328 -26509144 + (TTTTA)n Simple_repeat Simple_repeat 4 28 0 186 43 0 0 chr11 122274495 122274518 -26508954 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2060 128 0 3 chr11 122274520 122274809 -26508663 - AluSp SINE Alu -24 289 2 1873 146 3 48 chr11 122275459 122275775 -26507697 - AluJo SINE Alu -10 302 1 2631 61 0 0 chr11 122276686 122276997 -26506475 + AluY SINE Alu 1 311 0 24 0 0 0 chr11 122277262 122277286 -26506186 + AT_rich Low_complexity Low_complexity 1 24 0 200 135 0 27 chr11 122277383 122277420 -26506052 + (TA)n Simple_repeat Simple_repeat 2 37 0 2092 131 0 10 chr11 122277557 122277855 -26505617 - AluSx SINE Alu -17 295 1 400 239 0 0 chr11 122278012 122278083 -26505389 + MER69 DNA AcHobo 1 71 -2455 25 51 0 0 chr11 122278097 122278136 -26505336 + AT_rich Low_complexity Low_complexity 1 39 0 2466 70 3 3 chr11 122278160 122278462 -26505010 - AluSp SINE Alu -11 302 1 375 191 0 0 chr11 122278464 122278532 -26504940 + MER69 DNA AcHobo 2456 2523 -3 25 75 0 0 chr11 122279749 122279802 -26503670 + AT_rich Low_complexity Low_complexity 1 53 0 279 128 0 0 chr11 122280140 122280179 -26503293 + AluSx SINE Alu 1 39 -264 1786 116 0 41 chr11 122280278 122280545 -26502927 + AluSx SINE Alu 38 293 -19 353 282 60 27 chr11 122282377 122282526 -26500946 + L2 LINE L2 3114 3267 -46 431 194 10 0 chr11 122282665 122282763 -26500709 + (TA)n Simple_repeat Simple_repeat 2 100 0 323 267 0 0 chr11 122282764 122282854 -26500618 - L1MC4 LINE L1 -1339 6703 6614 299 233 11 11 chr11 122282776 122282866 -26500606 + L1MC4 LINE L1 6614 6703 -1339 * 318 206 0 0 chr11 122282866 122282939 -26500533 + (TATG)n Simple_repeat Simple_repeat 1 73 0 1968 127 45 3 chr11 122282939 122283230 -26500242 - AluSx SINE Alu -9 303 1 395 300 62 71 chr11 122283236 122283476 -26499996 - MIR SINE MIR -10 252 15 265 286 52 13 chr11 122284074 122284151 -26499321 - MIR3 SINE MIR -127 81 2 292 308 13 90 chr11 122285194 122285361 -26498111 + MIR3 SINE MIR 1 154 -70 241 97 0 0 chr11 122286102 122286133 -26497339 - MER103 DNA DNA -134 32 2 752 242 47 71 chr11 122286268 122286329 -26497143 + L1MC4a LINE L1 5627 5688 -2120 2332 101 0 3 chr11 122286329 122286636 -26496836 + AluSg SINE Alu 1 306 -4 752 242 47 71 chr11 122286636 122286896 -26496576 + L1MC4a LINE L1 5688 5940 -1868 2303 90 3 7 chr11 122286943 122287243 -26496229 + AluSx SINE Alu 1 299 -13 2181 128 0 10 chr11 122287243 122287547 -26495925 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr11 122288320 122288342 -26495130 + AT_rich Low_complexity Low_complexity 1 22 0 1881 143 3 20 chr11 122288342 122288643 -26494829 - AluJb SINE Alu -16 296 1 410 188 35 35 chr11 122288800 122288885 -26494587 - L2 LINE L2 0 3272 3188 2158 88 47 24 chr11 122288892 122289188 -26494284 + AluSx SINE Alu 1 303 -9 252 0 0 0 chr11 122289355 122289383 -26494089 + (TG)n Simple_repeat Simple_repeat 1 28 0 2204 60 40 27 chr11 122290078 122290376 -26493096 + AluY SINE Alu 1 302 -9 3512 181 36 15 chr11 122291733 122291774 -26491698 + MER67C LTR ERV1 21 60 -650 1921 117 0 45 chr11 122291774 122292125 -26491347 + AluSg1 SINE Alu 2 339 0 3512 181 36 15 chr11 122292125 122292756 -26490716 + MER67C LTR ERV1 60 708 -2 1596 226 48 22 chr11 122292949 122293364 -26490108 - LTR37A LTR ERV1 0 426 1 1039 181 0 0 chr11 122293367 122293533 -26489939 - FRAM SINE Alu -13 163 1 1684 79 0 9 chr11 122293573 122293788 -26489684 + AluSc SINE Alu 1 213 -96 34 65 0 0 chr11 122294067 122294129 -26489343 + AT_rich Low_complexity Low_complexity 1 62 0 1141 148 41 57 chr11 122294235 122294479 -26488993 - L1MA9 LINE L1 -22 6290 6051 480 150 60 30 chr11 122294449 122294549 -26488923 + L1 LINE L1 4202 4304 -1842 * 388 221 42 63 chr11 122294671 122294766 -26488706 + L2 LINE L2 3200 3292 -21 1765 142 34 24 chr11 122294799 122295094 -26488378 - AluJo SINE Alu -14 298 1 280 172 8 142 chr11 122295301 122295421 -26488051 + MIR SINE MIR 56 127 -81 2163 110 7 0 chr11 122295702 122295992 -26487480 - AluSg SINE Alu -14 296 5 1262 303 103 16 chr11 122296156 122296744 -26486728 + L2 LINE L2 2438 3122 -191 2236 114 3 0 chr11 122296744 122297050 -26486422 - AluSg SINE Alu -3 307 1 1262 303 103 16 chr11 122297050 122297260 -26486212 + L2 LINE L2 3122 3312 -1 1928 149 0 13 chr11 122297289 122297597 -26485875 + AluSx SINE Alu 1 304 -8 1821 274 32 63 chr11 122298465 122299457 -26484015 - L2 LINE L2 -1 3312 2367 1188 255 42 9 chr11 122299457 122299794 -26483678 + L1ME1 LINE L1 5801 6148 -18 1876 162 0 13 chr11 122299822 122300130 -26483342 + AluJb SINE Alu 1 304 -8 459 231 28 107 chr11 122300157 122300241 -26483231 + MER69 DNA AcHobo 2328 2417 -109 2347 101 0 0 chr11 122300241 122300539 -26482933 - AluSq SINE Alu -15 298 1 459 231 28 107 chr11 122300539 122300670 -26482802 + MER69 DNA AcHobo 2417 2526 0 1360 126 0 5 chr11 122300742 122300932 -26482540 + AluSg/x SINE Alu 87 275 -37 413 254 181 23 chr11 122301050 122301227 -26482245 - MLT1K LTR MaLR -194 394 190 1566 218 29 64 chr11 122301300 122301498 -26481974 - MER41B LTR ERV1 -10 476 273 276 30 0 0 chr11 122301498 122301531 -26481941 + (TG)n Simple_repeat Simple_repeat 2 34 0 2109 120 3 0 chr11 122301531 122301815 -26481657 - AluSx SINE Alu -27 285 1 1566 218 29 64 chr11 122301815 122302188 -26481284 - MER41B LTR ERV1 -211 275 100 212 301 128 38 chr11 122302666 122302799 -26480673 + L2 LINE L2 2960 3104 -168 24 0 0 0 chr11 122302929 122302953 -26480519 + AT_rich Low_complexity Low_complexity 1 24 0 2019 117 3 7 chr11 122303117 122303407 -26480065 - AluSx SINE Alu 0 312 24 198 0 0 0 chr11 122303690 122303712 -26479760 + (TG)n Simple_repeat Simple_repeat 1 22 0 2888 16 0 0 chr11 122304055 122304370 -26479102 - AluYb8 SINE Alu -3 315 1 432 242 156 8 chr11 122304402 122304530 -26478942 - MIR SINE MIR -33 229 83 1781 190 0 3 chr11 122304711 122305109 -26478363 + AluJo SINE Alu 1 397 0 924 186 6 6 chr11 122305161 122305322 -26478150 - AluJb SINE Alu -16 296 136 920 124 22 67 chr11 122305804 122305867 -26477605 + MER104 DNA Tc2 6 70 -1828 2883 12 0 6 chr11 122305867 122306186 -26477286 + AluYb8 SINE Alu 1 317 -1 920 124 22 67 chr11 122306186 122306300 -26477172 + MER104 DNA Tc2 70 175 -5 1088 48 28 25 chr11 122306387 122306743 -26476729 + (TTTC)n Simple_repeat Simple_repeat 1 357 0 1754 154 3 28 chr11 122306750 122307035 -26476437 - AluSg SINE Alu -32 278 1 307 283 26 66 chr11 122307243 122307395 -26476077 + LTR16C LTR ERVL 325 470 -21 30 0 0 0 chr11 122307395 122307425 -26476047 + AT_rich Low_complexity Low_complexity 1 30 0 382 283 46 7 chr11 122307667 122307819 -26475653 + L1ME4a LINE L1 5962 6119 -2 3572 187 52 50 chr11 122307861 122307980 -26475492 - L1MB7 LINE L1 -1 6183 6066 1983 128 20 7 chr11 122307980 122308277 -26475195 - AluJo SINE Alu -11 301 1 3572 187 52 50 chr11 122308277 122308778 -26474694 - L1MB7 LINE L1 -118 6066 5571 1910 139 0 11 chr11 122308778 122309091 -26474381 + AluSx SINE Alu 1 310 0 3572 187 52 50 chr11 122309091 122309471 -26474001 - L1MB7 LINE L1 -613 5571 5193 2111 139 7 0 chr11 122309473 122309877 -26473595 - AluSx SINE Alu 0 406 1 230 139 23 0 chr11 122309878 122309921 -26473551 - L1MB7 LINE L1 -945 5201 5158 1128 161 58 15 chr11 122309946 122310151 -26473321 + AluJo SINE Alu 85 298 -14 446 209 12 0 chr11 122310154 122310240 -26473232 - L1MD2 LINE L1 -15 6344 6258 3137 211 39 34 chr11 122310258 122310538 -26472934 - L1MB7 LINE L1 -990 5156 4879 2098 127 0 0 chr11 122310538 122310821 -26472651 - AluSx SINE Alu -29 283 1 3137 211 39 34 chr11 122310821 122311366 -26472106 - L1MB7 LINE L1 -1267 4879 4327 985 176 0 0 chr11 122311376 122311535 -26471937 - FAM SINE Alu -17 168 10 1999 204 74 62 chr11 122311553 122312118 -26471354 - L1MB7 LINE L1 -1819 4327 3756 27 29 0 0 chr11 122312280 122312314 -26471158 + AT_rich Low_complexity Low_complexity 1 34 0 225 0 0 0 chr11 122312361 122312386 -26471086 + (TTTTA)n Simple_repeat Simple_repeat 4 28 0 186 43 0 0 chr11 122312553 122312576 -26470896 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2048 128 0 3 chr11 122312578 122312867 -26470605 - AluSp SINE Alu -24 289 2 1873 146 3 48 chr11 122313517 122313833 -26469639 - AluJo SINE Alu -10 302 1 2631 61 0 0 chr11 122314745 122315056 -26468416 + AluY SINE Alu 1 311 0 201 74 0 0 chr11 122315313 122315340 -26468132 + (T)n Simple_repeat Simple_repeat 1 27 0 229 188 94 31 chr11 122315411 122315475 -26467997 + LTR66 LTR ERVL 366 433 -177 2092 131 0 10 chr11 122315612 122315910 -26467562 - AluSx SINE Alu -17 295 1 546 199 0 155 chr11 122316067 122316202 -26467270 + MER69A DNA AcHobo 1 95 -2431 2492 70 3 0 chr11 122316202 122316502 -26466970 - AluSp SINE Alu -12 301 1 546 199 0 155 chr11 122316502 122316572 -26466900 + MER69A DNA AcHobo 95 174 -3 25 75 0 0 chr11 122317789 122317842 -26465630 + AT_rich Low_complexity Low_complexity 1 53 0 279 128 0 0 chr11 122318180 122318219 -26465253 + AluSx SINE Alu 1 39 -261 1786 116 0 41 chr11 122318321 122318588 -26464884 + AluSx SINE Alu 38 293 -19 23 0 0 0 chr11 122318688 122318711 -26464761 + AT_rich Low_complexity Low_complexity 1 23 0 1089 169 11 28 chr11 122318840 122319017 -26464455 - FAM SINE Alu 0 175 2 274 395 44 24 chr11 122319627 122319923 -26463549 + L2 LINE L2 783 1084 -2230 197 320 40 32 chr11 122320027 122320152 -26463320 + L2 LINE L2 1277 1402 -1912 686 290 104 28 chr11 122320315 122320777 -26462695 + L1ME4a LINE L1 5621 6117 -4 1467 318 95 37 chr11 122320803 122321753 -26461719 + L2 LINE L2 1705 2709 -605 929 306 65 23 chr11 122321759 122322187 -26461285 + MLT1J LTR MaLR 66 511 0 26 88 0 0 chr11 122323115 122323183 -26460289 + AT_rich Low_complexity Low_complexity 1 68 0 836 174 97 5 chr11 122323235 122323430 -26460042 - AluJo SINE Alu -13 299 87 1988 116 53 3 chr11 122323514 122323798 -26459674 + AluSx SINE Alu 1 298 -14 1333 197 48 3 chr11 122325092 122325386 -26458086 + Charlie4a DNA MER1_type 43 349 -159 308 135 0 39 chr11 122325574 122325626 -26457846 - Alu SINE Alu -252 50 1 1642 159 13 58 chr11 122325709 122326017 -26457455 - AluSx SINE Alu -18 294 1 67 49 0 0 chr11 122326054 122326156 -26457316 + AT_rich Low_complexity Low_complexity 1 102 0 267 262 159 0 chr11 122326313 122326420 -26457052 + L2 LINE L2 3149 3272 0 282 388 68 41 chr11 122326695 122327035 -26456437 - L2 LINE L2 -25 3247 2899 2120 95 37 0 chr11 122327125 122327419 -26456053 - AluSp SINE Alu -8 305 1 913 80 7 51 chr11 122327422 122327560 -26455912 - AluSp SINE Alu -181 132 1 207 0 0 0 chr11 122327794 122327817 -26455655 + (T)n Simple_repeat Simple_repeat 1 23 0 26 30 0 0 chr11 122327862 122327895 -26455577 + AT_rich Low_complexity Low_complexity 1 33 0 1691 141 61 0 chr11 122328350 122328613 -26454859 + AluSq SINE Alu 3 281 -32 257 302 122 14 chr11 122328814 122328953 -26454519 - L2 LINE L2 -832 2482 2329 473 336 75 17 chr11 122328953 122329248 -26454224 - L2 LINE L2 -1285 2029 1718 405 335 48 48 chr11 122329329 122329577 -26453895 + L2 LINE L2 2428 2675 -639 202 234 21 0 chr11 122329872 122329919 -26453553 + MIR SINE MIR 206 253 -9 427 260 54 0 chr11 122330544 122330666 -26452806 + MIR3 SINE MIR 77 208 0 2051 123 0 3 chr11 122330814 122331118 -26452354 + AluSx SINE Alu 1 303 0 2051 155 0 13 chr11 122331626 122331942 -26451530 - AluJb SINE Alu 0 312 1 195 69 0 0 chr11 122332102 122332131 -26451341 + (TTTG)n Simple_repeat Simple_repeat 1 29 0 709 174 148 13 chr11 122332158 122332307 -26451165 - AluJo SINE Alu -81 231 63 1255 169 53 43 chr11 122332665 122332967 -26450505 + Charlie1b DNA MER1_type 51 355 -168 251 122 0 0 chr11 122332966 122333007 -26450465 + Charlie1b DNA MER1_type 482 522 -1 * 21 0 0 0 chr11 122334022 122334043 -26449429 + AT_rich Low_complexity Low_complexity 1 21 0 208 190 35 17 chr11 122334912 122334970 -26448502 + MIR SINE MIR 160 218 -44 24 32 0 0 chr11 122335035 122335066 -26448406 + AT_rich Low_complexity Low_complexity 1 31 0 479 155 0 0 chr11 122336472 122336543 -26446929 - AluJo SINE Alu -237 75 5 349 350 8 17 chr11 122337838 122337958 -26445514 - L2 LINE L2 -43 3229 3111 613 90 71 0 chr11 122339027 122339182 -26444290 + (TG)n Simple_repeat Simple_repeat 2 167 0 597 174 33 16 chr11 122339717 122339838 -26443634 + L1ME4a LINE L1 5969 6091 -30 202 375 48 19 chr11 122339849 122339953 -26443519 + MIR SINE MIR 42 148 -60 256 279 189 18 chr11 122340345 122340456 -26443016 + MIR SINE MIR 3 132 -130 257 269 15 0 chr11 122340462 122340529 -26442943 - L2 LINE L2 -2 3311 3244 1987 172 0 0 chr11 122342247 122342555 -26440917 - AluSx SINE Alu -2 310 3 405 226 50 144 chr11 122342956 122343137 -26440335 + MIR SINE MIR 2 165 -97 615 228 56 19 chr11 122343191 122343353 -26440119 + MIR SINE MIR 3 170 -92 359 342 67 1 chr11 122343485 122343634 -26439838 + MIR SINE MIR 23 176 -63 2111 146 3 3 chr11 122343729 122344038 -26439434 + AluSx SINE Alu 1 309 -3 4233 177 13 60 chr11 122344904 122345423 -26438049 + L1MB7 LINE L1 543 1085 -5457 327 49 0 0 chr11 122345423 122345464 -26438008 + (TG)n Simple_repeat Simple_repeat 2 42 0 1766 176 28 0 chr11 122345465 122345754 -26437718 - AluJo SINE Alu -15 297 1 4233 177 13 60 chr11 122345754 122346163 -26437309 + L1MB7 LINE L1 1084 1429 -5113 263 163 0 0 chr11 122346161 122346210 -26437262 + L1MB7 LINE L1 4916 4964 -1680 * 4162 161 43 17 chr11 122346219 122346732 -26436740 + L1MB7 LINE L1 5169 5667 -1015 2396 95 0 0 chr11 122346732 122347028 -26436444 + AluSx SINE Alu 1 296 -16 4162 161 43 17 chr11 122347028 122347775 -26435697 + L1MB7 LINE L1 5667 6461 -221 1225 139 106 34 chr11 122347816 122348053 -26435419 + L1MB7 LINE L1 6423 6676 -6 191 342 67 0 chr11 122348135 122348255 -26435217 + MIR SINE MIR 89 216 -46 751 230 0 7 chr11 122348255 122348390 -26435082 + FLAM_A SINE Alu 2 135 -7 207 176 0 0 chr11 122348460 122348494 -26434978 + CT-rich Low_complexity Low_complexity 3 36 0 472 214 0 15 chr11 122349030 122349138 -26434334 - MER5A DNA MER1_type -80 109 4 465 305 85 6 chr11 122349520 122349697 -26433775 + MIR SINE MIR 20 210 -52 477 324 23 11 chr11 122350055 122350231 -26433241 - MIR3 SINE MIR -15 193 16 210 71 0 0 chr11 122353148 122353176 -26430296 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 2299 84 0 0 chr11 122354127 122354426 -26429046 - AluSx SINE Alu -13 299 1 464 278 60 0 chr11 122354504 122354637 -26428835 + MIR SINE MIR 116 256 -6 192 97 0 0 chr11 122355668 122355699 -26427773 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1494 167 18 14 chr11 122355701 122355977 -26427495 - AluJb SINE Alu -35 277 1 778 156 55 0 chr11 122356665 122356793 -26426679 - AluJo SINE Alu -177 135 1 970 141 0 11 chr11 122356954 122357131 -26426341 + (TTTC)n Simple_repeat Simple_repeat 4 178 0 634 187 0 9 chr11 122357131 122357238 -26426234 - FRAM SINE Alu -60 116 11 238 381 21 0 chr11 122357363 122357460 -26426012 - L2 LINE L2 -451 2863 2765 191 61 30 0 chr11 122357472 122357505 -26425967 + (TTTTTA)n Simple_repeat Simple_repeat 2 35 0 2028 231 21 58 chr11 122357591 122358209 -26425263 + L1P3 LINE L1 1 595 -5280 1867 149 3 3 chr11 122358520 122358815 -26424657 - AluJb SINE Alu -17 295 1 291 269 185 9 chr11 122358880 122358988 -26424484 + MER5A DNA MER1_type 55 181 -8 260 113 0 0 chr11 122359695 122359739 -26423733 - FLAM SINE Alu -8 125 89 665 201 0 56 chr11 122359845 122359989 -26423483 - FRAM SINE Alu -15 161 26 219 114 0 0 chr11 122360510 122360545 -26422927 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 185 348 42 51 chr11 122361096 122361214 -26422258 + L2 LINE L2 3143 3259 -13 493 287 50 57 chr11 122361450 122361600 -26421872 + L1ME4a LINE L1 5467 5616 -505 1698 85 0 0 chr11 122361600 122361823 -26421649 + AluY SINE Alu 83 305 -6 493 287 50 57 chr11 122361823 122361972 -26421500 + L1ME4a LINE L1 5616 5764 -357 195 371 11 22 chr11 122362113 122362202 -26421270 + MIR SINE MIR 65 152 -56 331 191 162 29 chr11 122362355 122362491 -26420981 + L1ME4a LINE L1 5963 6116 -5 366 270 50 0 chr11 122362617 122362717 -26420755 - MIR3 SINE MIR -36 172 68 1723 147 3 33 chr11 122363565 122363864 -26419608 - AluJo SINE Alu -14 298 9 412 311 218 11 chr11 122364161 122364441 -26419031 - L3 LINE CR1 -10 1567 1230 180 0 0 0 chr11 122364777 122364797 -26418675 + (T)n Simple_repeat Simple_repeat 1 20 0 2022 131 0 7 chr11 122365113 122365418 -26418054 - AluJb SINE Alu -9 303 1 627 319 0 5 chr11 122366395 122366580 -26416892 - MER91B DNA MER1_type -5 185 2 380 301 77 0 chr11 122366751 122366894 -26416578 - MIR SINE MIR -6 256 103 333 279 13 0 chr11 122367000 122367079 -26416393 - MIR SINE MIR -162 100 21 197 212 167 76 chr11 122367245 122367311 -26416161 - L2 LINE L2 -25 3288 3217 417 283 9 9 chr11 122367404 122367510 -26415962 - MER5B DNA MER1_type -70 108 3 1262 186 126 44 chr11 122367818 122368027 -26415445 + MER2 DNA MER2_type 2 247 -97 2275 102 0 3 chr11 122368027 122368341 -26415131 - AluSp SINE Alu 0 313 1 1262 186 126 44 chr11 122368341 122368448 -26415024 + MER2 DNA MER2_type 247 344 0 226 285 92 39 chr11 122368523 122368653 -26414819 - MLT1J1 LTR MaLR -21 425 289 2048 113 20 0 chr11 122369370 122369662 -26413810 - AluSc SINE Alu -11 298 1 511 283 103 90 chr11 122370523 122370834 -26412638 - L2 LINE L2 -14 3258 2944 22 0 0 0 chr11 122371566 122371588 -26411884 + AT_rich Low_complexity Low_complexity 1 22 0 2048 124 3 0 chr11 122371591 122371882 -26411590 + AluSq SINE Alu 1 292 -21 552 291 53 42 chr11 122371932 122372121 -26411351 + MIR SINE MIR 20 210 -52 923 269 120 41 chr11 122372167 122372610 -26410862 - L2 LINE L2 -2 3311 2834 2254 221 52 44 chr11 122372617 122372782 -26410690 + MER119 DNA MER1_type 6 168 -415 2106 113 0 29 chr11 122372782 122373091 -26410381 - AluSx SINE Alu -12 300 1 2254 221 52 44 chr11 122373091 122373496 -26409976 + MER119 DNA MER1_type 168 581 -2 321 208 52 31 chr11 122373641 122373737 -26409735 - MER5B DNA MER1_type -4 174 77 23 54 0 0 chr11 122374175 122374212 -26409260 + GC_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr11 122374932 122374956 -26408516 + AT_rich Low_complexity Low_complexity 1 24 0 515 262 58 35 chr11 122375002 122375174 -26408298 + MIR SINE MIR 14 189 -73 361 270 31 31 chr11 122375899 122376062 -26407410 - HAL1b LINE L1 -579 769 607 600 69 39 10 chr11 122376227 122376329 -26407143 + (TTCC)n Simple_repeat Simple_repeat 2 106 0 505 282 58 69 chr11 122376329 122376620 -26406852 - HAL1b LINE L1 -965 383 96 3074 242 25 3 chr11 122376624 122377334 -26406138 - HsTC2c DNA MER2_type 0 729 4 22 35 0 0 chr11 122377452 122377481 -26405991 + AT_rich Low_complexity Low_complexity 1 29 0 533 304 75 42 chr11 122377583 122377918 -26405554 + MLT1J1 LTR MaLR 101 446 0 312 277 0 0 chr11 122378488 122378553 -26404919 + L1MC4 LINE L1 6648 6712 -1330 214 353 30 53 chr11 122380772 122380905 -26402567 + MIR SINE MIR 17 146 -62 239 282 71 77 chr11 122381065 122381180 -26402292 - MIR SINE MIR -93 115 20 502 200 221 0 chr11 122381834 122381979 -26401493 - MER5A DNA MER1_type -3 186 10 965 215 17 110 chr11 122382140 122382652 -26400820 - MLT2B2 LTR ERVL -96 458 1 665 272 69 20 chr11 122382892 122383094 -26400378 + MIR SINE MIR 32 243 -19 496 370 25 5 chr11 122383115 122383318 -26400154 - MIR SINE MIR -6 256 50 2102 101 17 0 chr11 122383353 122383641 -26399831 - AluSx SINE Alu -2 310 18 2972 208 34 29 chr11 122385032 122385713 -26397759 - L1MC4a LINE L1 0 7808 7121 1756 133 32 36 chr11 122385713 122386022 -26397450 - AluJb SINE Alu -4 308 1 2972 208 34 29 chr11 122386022 122386042 -26397430 - L1MC4a LINE L1 -687 7121 7103 2185 99 7 0 chr11 122386830 122387124 -26396348 + AluSx SINE Alu 1 296 -16 380 355 35 47 chr11 122387792 122387964 -26395508 - L2 LINE L2 -4 3268 3099 * 816 235 128 13 chr11 122387952 122388186 -26395286 - MIR SINE MIR 0 262 2 244 250 0 0 chr11 122388368 122388420 -26395052 - L2 LINE L2 -16 3256 3205 2087 112 3 7 chr11 122388626 122388929 -26394543 - AluSx SINE Alu -10 302 1 189 171 0 0 chr11 122389731 122389766 -26393706 + (TG)n Simple_repeat Simple_repeat 1 35 0 909 206 23 6 chr11 122390944 122391119 -26392353 + MER45A DNA AcHobo 1 178 0 948 231 27 27 chr11 122391460 122391685 -26391787 - MIR SINE MIR 0 262 38 781 271 54 12 chr11 122391681 122391921 -26391551 + MIR SINE MIR 7 256 -6 * 592 277 59 35 chr11 122392347 122392549 -26390923 - L2 LINE L2 0 3313 3107 386 190 248 0 chr11 122392771 122392892 -26390580 - MLT1I LTR MaLR 0 409 259 1102 262 51 19 chr11 122392962 122393441 -26390031 - MLT1F1 LTR MaLR -4 563 1 410 196 52 0 chr11 122393485 122393582 -26389890 - MLT1I LTR MaLR -303 106 5 223 304 88 20 chr11 122394015 122394117 -26389355 - L2 LINE L2 -597 2717 2609 191 61 30 0 chr11 122394125 122394158 -26389314 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 520 247 108 27 chr11 122395294 122395480 -26387992 - LTR16C LTR ERVL 0 491 291 684 213 188 25 chr11 122396484 122396724 -26386748 - L1ME1 LINE L1 -51 6115 5916 297 0 0 0 chr11 122396783 122396816 -26386656 + (CA)n Simple_repeat Simple_repeat 1 33 0 406 257 18 12 chr11 122397670 122397806 -26385666 - L1MC4a LINE L1 -280 5882 5746 211 209 0 30 chr11 122398537 122398593 -26384879 + (TA)n Simple_repeat Simple_repeat 1 56 -9 1531 162 3 56 chr11 122398593 122398895 -26384577 - AluJb SINE Alu -26 286 1 211 209 0 30 chr11 122398895 122398905 -26384567 + (TA)n Simple_repeat Simple_repeat 56 65 0 430 176 69 75 chr11 122398916 122399075 -26384397 - L1MC5 LINE L1 -35 7926 7769 456 274 78 0 chr11 122400431 122400584 -26382888 + MER103 DNA DNA 1 165 -1 313 259 49 0 chr11 122400878 122400959 -26382513 - MIR SINE MIR -113 149 65 521 201 60 47 chr11 122401013 122401162 -26382310 + L2 LINE L2 3163 3313 0 340 240 10 10 chr11 122401533 122401633 -26381839 - HAL1 LINE L1 -163 2344 2245 349 281 75 20 chr11 122401738 122401884 -26381588 - HAL1b LINE L1 -449 899 746 568 268 168 53 chr11 122402307 122402352 -26381120 - HAL1 LINE L1 -732 1775 1737 2993 191 5 12 chr11 122402352 122402913 -26380559 + MER89 LTR ERV1 1 557 -2 568 268 168 53 chr11 122402913 122403449 -26380023 - HAL1 LINE L1 -770 1737 1127 1458 150 0 0 chr11 122403474 122403700 -26379772 + AluSg/x SINE Alu 76 301 -11 329 228 0 25 chr11 122404531 122404610 -26378862 - MIR SINE MIR -113 95 19 181 268 45 62 chr11 122404739 122404851 -26378621 + L2 LINE L2 3161 3270 -2 204 358 33 17 chr11 122404851 122404971 -26378501 - L2 LINE L2 -209 3063 2942 695 267 39 50 chr11 122405204 122405462 -26378010 - MIR SINE MIR 0 262 8 187 140 80 60 chr11 122405656 122405706 -26377766 + MIR3 SINE MIR 158 208 0 498 104 75 47 chr11 122406876 122406982 -26376490 - MER92B LTR ERV1 0 636 528 1436 135 11 68 chr11 122406985 122407266 -26376206 - MER44D DNA MER2_type -1 604 340 7387 47 13 0 chr11 122407271 122408236 -26375236 - L1PA6 LINE L1 -13 6141 5175 13135 21 1 0 chr11 122408241 122410523 -26372949 - L1PA2 LINE L1 0 6155 3876 31978 94 10 14 chr11 122410523 122415119 -26368353 - L1PA6 LINE L1 -955 5191 611 513 172 0 32 chr11 122415122 122415215 -26368257 - MER44D DNA MER2_type -249 360 1 2280 168 59 64 chr11 122415216 122415668 -26367804 - MER92B LTR ERV1 -110 526 76 1912 128 0 10 chr11 122415668 122415956 -26367516 - AluSq SINE Alu -21 292 8 2280 168 59 64 chr11 122415956 122416032 -26367440 - MER92B LTR ERV1 -560 76 1 257 263 102 58 chr11 122416123 122416260 -26367212 - MIR SINE MIR -97 165 23 581 274 87 39 chr11 122417239 122417469 -26366003 + MIR SINE MIR 15 255 -7 201 39 0 0 chr11 122417469 122417495 -26365977 + (ATG)n Simple_repeat Simple_repeat 1 26 0 413 238 0 133 chr11 122417893 122418044 -26365428 + MIR SINE MIR 49 179 -83 360 64 0 0 chr11 122419178 122419225 -26364247 + (TG)n Simple_repeat Simple_repeat 1 47 0 200 289 165 0 chr11 122419840 122419937 -26363535 + MIR3 SINE MIR 9 121 -87 2072 126 10 3 chr11 122420668 122420978 -26362494 + AluSx SINE Alu 1 312 0 1355 176 46 20 chr11 122420989 122421291 -26362181 + AluJo SINE Alu 1 310 -2 259 338 0 0 chr11 122421370 122421438 -26362034 + polypyrimidine Low_complexity Low_complexity 2 69 0 1101 169 142 0 chr11 122421565 122421784 -26361688 + MLT1A1 LTR MaLR 116 365 0 574 259 104 24 chr11 122424082 122424294 -26359178 + MIR SINE MIR 34 262 0 1229 184 59 4 chr11 122424404 122424643 -26358829 + AluJo SINE Alu 1 252 -60 213 154 0 0 chr11 122424646 122424685 -26358787 + A-rich Low_complexity Low_complexity 1 39 0 945 280 146 35 chr11 122424745 122425377 -26358095 - L1MC4a LINE L1 -1641 6167 5466 2097 113 0 3 chr11 122425398 122425698 -26357774 - AluSx SINE Alu -13 299 1 1637 292 74 12 chr11 122425938 122426452 -26357020 + MER115 DNA AcHobo 148 693 0 183 80 0 0 chr11 122426495 122426520 -26356952 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 1075 122 0 0 chr11 122426520 122426667 -26356805 - AluSg/x SINE Alu -32 278 132 1789 113 9 113 chr11 122426667 122426996 -26356476 - AluSx SINE Alu -5 297 3 253 261 0 15 chr11 122427117 122427182 -26356290 - MIR SINE MIR -113 149 86 251 225 155 92 chr11 122428246 122428388 -26355084 + MIR SINE MIR 3 153 -109 215 263 53 0 chr11 122428728 122428785 -26354687 + L2 LINE L2 3195 3254 -59 646 251 77 15 chr11 122429407 122429602 -26353870 - Charlie8 DNA MER1_type -2186 231 25 211 308 122 9 chr11 122430631 122430738 -26352734 + L2 LINE L2 3136 3254 -18 399 339 109 13 chr11 122430768 122430998 -26352474 - MIR SINE MIR -10 252 1 334 251 40 20 chr11 122431010 122431110 -26352362 - MIR SINE MIR -61 201 101 785 259 5 35 chr11 122431337 122431534 -26351938 + MIR SINE MIR 38 228 -34 1340 233 118 32 chr11 122432011 122432418 -26351054 + MLT2B2 LTR ERVL 1 442 -73 700 83 53 0 chr11 122432418 122432551 -26350921 + (TCTA)n Simple_repeat Simple_repeat 3 142 0 363 122 0 0 chr11 122432553 122432612 -26350860 + MLT2C1 LTR ERVL 347 397 0 873 267 82 60 chr11 122432936 122433337 -26350135 - LTR16B LTR ERVL -54 410 1 272 192 0 39 chr11 122433683 122433735 -26349737 + MIR SINE MIR 197 246 -16 443 230 39 17 chr11 122434372 122434510 -26348962 + MIR SINE MIR 17 154 -68 1873 141 36 99 chr11 122434782 122435194 -26348278 + MLT1B LTR MaLR 5 390 0 6817 54 22 4 chr11 122435254 122436526 -26346946 - L1PA7 LINE L1 0 6154 4855 921 47 0 0 chr11 122436526 122436633 -26346839 - U6 snRNA snRNA 0 107 1 1774 133 7 14 chr11 122437662 122437955 -26345517 - AluSx SINE Alu -21 291 1 859 219 13 76 chr11 122438016 122438254 -26345218 + MLT1J2 LTR MaLR 1 223 -227 457 226 92 87 chr11 122438363 122438558 -26344914 + MLT1J1 LTR MaLR 250 445 -1 937 281 56 7 chr11 122438842 122439145 -26344327 + LTR33 LTR ERVL 1 318 -203 311 326 52 7 chr11 122439171 122439306 -26344166 + LTR33 LTR ERVL 373 513 -8 209 302 0 52 chr11 122439426 122439522 -26343950 - MIR SINE MIR -111 151 61 1882 152 0 9 chr11 122440241 122440556 -26342916 - AluJb SINE Alu 0 312 1 1433 152 11 2 chr11 122440598 122440886 -26342586 - MER2 DNA MER2_type -2 343 2 21 36 0 0 chr11 122441006 122441034 -26342438 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr11 122441080 122441108 -26342364 + AT_rich Low_complexity Low_complexity 1 28 0 198 339 15 0 chr11 122441116 122441181 -26342291 + L2 LINE L2 3207 3272 0 197 191 0 48 chr11 122441474 122441516 -26341956 - MIR SINE MIR -112 150 111 1907 142 3 7 chr11 122442397 122442707 -26340765 - AluSx SINE Alu -3 309 1 230 264 283 9 chr11 122442721 122442827 -26340645 + L2 LINE L2 3179 3313 0 282 132 0 0 chr11 122443230 122443283 -26340189 + (TG)n Simple_repeat Simple_repeat 1 53 0 205 229 69 48 chr11 122443312 122443441 -26340031 + MIR SINE MIR 20 184 -78 2254 112 0 0 chr11 122443642 122443954 -26339518 - AluSx SINE Alu 0 312 1 269 248 152 9 chr11 122444274 122444379 -26339093 + MIR SINE MIR 57 176 -86 233 274 40 57 chr11 122444475 122444599 -26338873 + MER5A DNA MER1_type 66 187 -2 401 286 88 47 chr11 122445239 122445581 -26337891 - LTR33A LTR ERVL 0 523 168 1227 250 107 14 chr11 122445751 122445765 -26337707 - L2 LINE L2 -8 3305 3294 1985 132 0 0 chr11 122445765 122446053 -26337419 - AluSc SINE Alu -21 288 1 1227 250 107 14 chr11 122446053 122446478 -26336994 - L2 LINE L2 -19 3294 2825 255 238 131 36 chr11 122446647 122446731 -26336741 - L2 LINE L2 -474 2840 2749 287 380 66 0 chr11 122446851 122446972 -26336500 + L2 LINE L2 3183 3311 -2 313 302 132 8 chr11 122447836 122447965 -26335507 - MIR SINE MIR -57 205 61 437 303 112 56 chr11 122448061 122448418 -26335054 - L2 LINE L2 0 3272 2896 780 296 32 5 chr11 122448815 122449035 -26334437 + L3 LINE CR1 738 963 -614 2304 154 203 49 chr11 122449041 122449573 -26333899 + LTR18B LTR ERVL 1 614 0 180 176 0 0 chr11 122450610 122450644 -26332828 + CT-rich Low_complexity Low_complexity 1 34 0 1333 221 45 34 chr11 122450645 122450998 -26332474 + MLT1A1 LTR MaLR 1 357 -8 284 314 49 0 chr11 122451025 122451127 -26332345 - L2 LINE L2 -16 3256 3150 204 249 64 81 chr11 122451441 122451614 -26331858 - L2 LINE L2 -182 3090 2921 195 186 0 0 chr11 122452021 122452064 -26331408 + CT-rich Low_complexity Low_complexity 1 43 0 1330 156 17 22 chr11 122452707 122452938 -26330534 + Tigger2 DNA MER2_type 3 232 -2486 2145 119 49 49 chr11 122452939 122453308 -26330164 + Tigger2 DNA MER2_type 2350 2718 0 725 251 59 14 chr11 122453373 122453592 -26329880 - MIR SINE MIR -15 247 19 1452 190 44 78 chr11 122453598 122453982 -26329490 - MLT1A2 LTR MaLR 0 374 4 250 333 121 17 chr11 122454626 122454866 -26328606 - L2 LINE L2 -571 2743 2479 364 241 95 29 chr11 122455013 122455150 -26328322 - MLT1L LTR MaLR -40 575 430 185 81 0 27 chr11 122455620 122455657 -26327815 + (TTTTTA)n Simple_repeat Simple_repeat 6 41 0 14472 42 1 0 chr11 122455667 122458144 -26325328 - L1PA4 LINE L1 -11 6144 3650 1329 204 18 18 chr11 122458320 122458594 -26324878 + Charlie4 DNA MER1_type 17 290 -1671 22 0 0 0 chr11 122459491 122459513 -26323959 + AT_rich Low_complexity Low_complexity 1 22 0 840 185 97 46 chr11 122459777 122459993 -26323479 + AluJo SINE Alu 86 312 0 2895 254 63 77 chr11 122460123 122461767 -26321705 + Charlie4 DNA MER1_type 336 1956 -5 2134 125 3 0 chr11 122461771 122462067 -26321405 + AluSx SINE Alu 1 297 -15 205 272 136 19 chr11 122462398 122462501 -26320971 - L2 LINE L2 -21 3251 3137 305 228 10 69 chr11 122462560 122462661 -26320811 + L2 LINE L2 3178 3272 0 1175 129 9 76 chr11 122462707 122462843 -26320629 + MER2 DNA MER2_type 1 119 -226 2095 100 7 0 chr11 122462843 122463146 -26320326 - AluSx SINE Alu 0 305 1 1175 129 9 76 chr11 122463146 122463233 -26320239 + MER2 DNA MER2_type 119 210 -135 798 202 119 62 chr11 122463307 122463439 -26320033 - L1ME4a LINE L1 -23 6098 5975 309 26 0 0 chr11 122463439 122463477 -26319995 + (CA)n Simple_repeat Simple_repeat 2 39 0 798 202 119 62 chr11 122463477 122463680 -26319792 - L1ME4a LINE L1 -146 5975 5744 462 300 37 53 chr11 122463700 122463943 -26319529 - MIR SINE MIR -9 253 15 586 200 9 0 chr11 122464478 122464588 -26318884 + MER81 DNA DNA 4 114 0 588 196 43 22 chr11 122464784 122464922 -26318550 + L2 LINE L2 2565 2705 -609 2246 243 57 20 chr11 122464929 122465591 -26317881 - L1ME1 LINE L1 0 6166 5480 36 0 0 0 chr11 122465592 122465628 -26317844 + AT_rich Low_complexity Low_complexity 1 36 0 686 157 149 8 chr11 122465628 122465762 -26317710 - AluJb SINE Alu -159 153 1 459 273 29 54 chr11 122465762 122465967 -26317505 + MER63A DNA MER1_type 10 209 -1 708 143 7 58 chr11 122465967 122466075 -26317397 - L1ME1 LINE L1 -1352 4794 4695 2417 69 0 0 chr11 122466075 122466365 -26317107 - AluY SINE Alu -21 290 1 708 143 7 58 chr11 122466365 122466410 -26317062 - L1ME1 LINE L1 -1451 4695 4649 467 206 24 48 chr11 122466383 122466548 -26316924 - L1MCc LINE L1 -1120 5026 4866 * 4851 155 22 19 chr11 122466547 122467956 -26315516 + L1P3 LINE L1 474 1901 -4550 372 239 78 21 chr11 122467956 122468098 -26315374 - L1MCc LINE L1 -2107 4834 4685 1126 186 147 53 chr11 122468104 122468148 -26315324 + MLT1B LTR MaLR 1 40 -350 1150 176 36 159 chr11 122468148 122468562 -26314910 - MLT1A1 LTR MaLR 0 365 3 1126 186 147 53 chr11 122468562 122468872 -26314600 + MLT1B LTR MaLR 40 388 -2 4977 249 78 40 chr11 122468877 122470620 -26312852 - L1MCc LINE L1 -2263 4678 3003 2456 73 0 13 chr11 122470620 122470935 -26312537 - AluY SINE Alu 0 311 1 4977 249 78 40 chr11 122470935 122471790 -26311682 - L1MCc LINE L1 -3938 3003 2182 2166 79 86 0 chr11 122471790 122472068 -26311404 - AluSc SINE Alu -7 302 1 4977 249 78 40 chr11 122472068 122472570 -26310902 - L1MCc LINE L1 -4759 2182 1701 3750 95 69 9 chr11 122472570 122473107 -26310365 + MER61E LTR ERV1 1 569 0 4977 249 78 40 chr11 122473107 122473318 -26310154 - L1MCc LINE L1 -5240 1701 1070 318 323 63 31 chr11 122473345 122473472 -26310000 - L1MCc LINE L1 -5417 1006 876 2228 153 2 53 chr11 122473616 122474027 -26309445 + MLT1B LTR MaLR 1 390 0 379 245 106 26 chr11 122474169 122474320 -26309152 - L1MCc LINE L1 -6250 173 11 412 216 36 9 chr11 122474321 122474432 -26309040 + L2 LINE L2 2694 2807 -507 635 221 33 50 chr11 122474435 122474616 -26308856 - MER5B DNA MER1_type 0 178 1 502 299 66 15 chr11 122474779 122474976 -26308496 + L2 LINE L2 2818 3024 -289 195 100 0 0 chr11 122474992 122475022 -26308450 + (TC)n Simple_repeat Simple_repeat 1 30 0 1472 199 29 19 chr11 122475049 122475360 -26308112 - MLT1C LTR MaLR 0 467 154 817 210 46 82 chr11 122475374 122475655 -26307817 - MLT1C LTR MaLR -196 271 1 374 256 6 77 chr11 122475667 122475835 -26307637 + L2 LINE L2 3158 3313 0 182 257 86 14 chr11 122477449 122477519 -26305953 + MIR SINE MIR 78 152 -110 281 272 117 10 chr11 122477550 122477653 -26305819 - L2 LINE L2 -9 3304 3191 857 193 102 15 chr11 122477655 122477852 -26305620 + MER58C DNA MER1_type 1 214 -1 1365 162 52 13 chr11 122477860 122478168 -26305304 + MER33 DNA MER1_type 5 324 0 288 312 57 7 chr11 122478180 122478321 -26305151 + MIR SINE MIR 64 211 -51 290 221 70 12 chr11 122478361 122478447 -26305025 + MIR SINE MIR 62 152 -110 262 324 102 9 chr11 122478474 122478582 -26304890 - L2 LINE L2 -5 3267 3150 638 236 73 0 chr11 122478584 122478749 -26304723 + MER58C DNA MER1_type 1 177 -38 477 265 61 11 chr11 122479089 122479270 -26304202 - MIR SINE MIR -52 210 21 239 266 144 7 chr11 122479389 122479528 -26303944 + MIR3 SINE MIR 48 205 -3 295 328 17 9 chr11 122479574 122479690 -26303782 - MER5A DNA MER1_type -22 167 51 391 273 79 29 chr11 122479785 122479924 -26303548 + L2 LINE L2 2474 2619 -695 397 211 267 17 chr11 122479951 122480131 -26303341 + MIR SINE MIR 37 261 -1 446 292 178 29 chr11 122480140 122480421 -26303051 + L2 LINE L2 2626 2948 -366 668 239 30 6 chr11 122480436 122480603 -26302869 + L2 LINE L2 3143 3313 0 245 268 232 43 chr11 122482302 122482440 -26301032 + MIR SINE MIR 56 219 -43 236 324 94 49 chr11 122482506 122482750 -26300722 + MIR SINE MIR 2 256 -6 603 294 70 5 chr11 122483500 122483701 -26299771 - MIR SINE MIR -2 260 47 243 296 0 0 chr11 122485866 122486035 -26297437 + (CA)n Simple_repeat Simple_repeat 2 170 0 320 211 5 38 chr11 122486056 122486241 -26297231 + (CA)n Simple_repeat Simple_repeat 2 180 0 312 268 0 0 chr11 122486305 122486469 -26297003 + (CA)n Simple_repeat Simple_repeat 1 164 0 565 234 48 0 chr11 122487042 122487166 -26296306 - MER94 DNA DNA -2 132 3 279 239 30 0 chr11 122488049 122488116 -26295356 - L2 LINE L2 -4 3268 3200 1573 236 47 28 chr11 122488239 122488666 -26294806 + LTR16A LTR ERVL 16 450 0 969 284 69 73 chr11 122488666 122489418 -26294054 - L2 LINE L2 -197 3075 2250 2373 195 53 25 chr11 122489418 122489941 -26293531 - MLT1F LTR MaLR -4 538 1 969 284 69 73 chr11 122489941 122490119 -26293353 - L2 LINE L2 -1022 2250 2073 326 242 47 31 chr11 122490124 122490252 -26293220 - MER94 DNA DNA -1 133 4 26 0 0 0 chr11 122492486 122492512 -26290960 + AT_rich Low_complexity Low_complexity 1 26 0 515 325 48 5 chr11 122493197 122493403 -26290069 - MIR SINE MIR -1 261 47 22 0 0 0 chr11 122494133 122494155 -26289317 + AT_rich Low_complexity Low_complexity 1 22 0 255 288 0 0 chr11 122494185 122494251 -26289221 - L2 LINE L2 -61 3252 3187 210 297 81 101 chr11 122494923 122495071 -26288401 - L3 LINE CR1 -7 1570 1426 409 338 61 61 chr11 122495071 122495532 -26287940 - L2 LINE L2 0 3272 2812 3211 136 28 16 chr11 122495574 122496080 -26287392 + MER41E LTR ERV1 1 512 0 204 237 51 0 chr11 122496093 122496152 -26287320 - L3 LINE CR1 -150 1427 1366 209 316 7 79 chr11 122496468 122496607 -26286865 + L2 LINE L2 3144 3272 0 1633 299 30 30 chr11 122497117 122497710 -26285762 + MLT1E LTR MaLR 1 593 0 408 269 14 28 chr11 122497710 122497855 -26285617 + MLT1E-int LTR MaLR 1 143 -1228 943 211 19 19 chr11 122497873 122498082 -26285390 + MLT1E-int LTR MaLR 393 601 -770 724 243 95 11 chr11 122498139 122498328 -26285144 + MLT1F LTR MaLR 335 539 -3 266 289 67 10 chr11 122498385 122498489 -26284983 + HAL1 LINE L1 463 572 -1935 3796 243 66 68 chr11 122498496 122500351 -26283121 + HAL1 LINE L1 652 2502 -5 22 0 0 0 chr11 122500362 122500384 -26283088 + AT_rich Low_complexity Low_complexity 1 22 0 316 364 27 18 chr11 122500791 122501016 -26282456 - MIR SINE MIR -13 249 23 623 295 10 10 chr11 122501142 122501335 -26282137 + MIR3 SINE MIR 16 208 0 298 371 50 68 chr11 122501648 122502031 -26281441 - L2 LINE L2 -1 3271 2896 220 222 30 111 chr11 122502548 122502647 -26280825 + MIR SINE MIR 104 194 -68 1517 181 17 10 chr11 122503676 122503964 -26279508 + AluJo SINE Alu 6 295 -17 907 213 22 36 chr11 122505651 122505876 -26277596 - MIR SINE MIR 0 262 41 2058 218 153 14 chr11 122506778 122507472 -26276000 - LTR50 LTR ERVL -5 790 1 1970 129 4 7 chr11 122508880 122509160 -26274312 + AluSq SINE Alu 21 299 -14 26 0 0 0 chr11 122509687 122509713 -26273759 + AT_rich Low_complexity Low_complexity 1 26 0 6863 110 19 0 chr11 122509752 122510777 -26272695 + L1PA8 LINE L1 11 1054 -5407 8260 107 2 0 chr11 122510777 122512807 -26270665 + L1PA8 LINE L1 4443 6487 0 23794 146 14 17 chr11 122512820 122515793 -26267679 - L1PA10 LINE L1 -2 6481 3495 2348 107 0 0 chr11 122515793 122516092 -26267380 - AluSg SINE Alu -11 299 1 23794 146 14 17 chr11 122516092 122518557 -26264915 - L1PA10 LINE L1 -2988 3495 1023 1122 122 5 0 chr11 122518568 122518757 -26264715 - L1P5 LINE L1 -620 5536 5347 339 150 38 0 chr11 122518759 122518839 -26264633 + L1M1 LINE L1 5080 5162 -984 * 896 90 6 72 chr11 122518832 122518998 -26264474 + L1M1 LINE L1 5602 5756 -544 3632 121 22 29 chr11 122519014 122519641 -26263831 + L1PB4 LINE L1 5533 6155 -1 326 203 55 31 chr11 122519654 122519782 -26263690 + L1M4 LINE L1 5003 5133 -1013 406 195 42 17 chr11 122519783 122519873 -26263599 + L1M4 LINE L1 5089 5184 -962 655 121 0 113 chr11 122519873 122520014 -26263458 + L1PB1 LINE L1 6024 6148 -3 406 195 42 17 chr11 122520014 122520041 -26263431 + L1M4 LINE L1 5184 5209 -937 * 827 212 47 90 chr11 122520040 122520427 -26263045 + L1M4 LINE L1 5417 5786 -388 4803 190 57 14 chr11 122520432 122521988 -26261484 + L1MC2 LINE L1 4712 6344 0 353 212 61 0 chr11 122521991 122522090 -26261382 - L1 LINE L1 -1053 5275 5171 3102 150 13 56 chr11 122522092 122522791 -26260681 - L1 LINE L1 -1243 5085 4417 4889 217 39 48 chr11 122522795 122524813 -26258659 - L1 LINE L1 -3787 2541 557 417 97 0 0 chr11 122526852 122526914 -26256558 - L1MB2 LINE L1 -6 6165 6104 2541 219 20 4 chr11 122526960 122527644 -26255828 - L1MEc LINE L1 -2879 3336 2642 3429 168 22 38 chr11 122527655 122528416 -26255056 - L1MB4 LINE L1 -51 6129 5381 1246 271 117 27 chr11 122528431 122529286 -26254186 - L1MEc LINE L1 -4461 1935 1004 1499 291 63 40 chr11 122529306 122529987 -26253485 - L1MEc LINE L1 -5663 733 37 22 56 0 0 chr11 122530032 122530068 -26253404 + AT_rich Low_complexity Low_complexity 1 36 0 5604 120 13 32 chr11 122530083 122531001 -26252471 - L1MC1 LINE L1 -5 6328 5428 367 316 35 40 chr11 122531126 122531300 -26252172 - MIR SINE MIR 0 262 90 4856 121 170 62 chr11 122531302 122532452 -26251020 - MER52C LTR ERV1 -3 1275 1 387 225 45 0 chr11 122532452 122532541 -26250931 - MIR SINE MIR -169 93 1 238 289 100 11 chr11 122532815 122532995 -26250477 - HAL1 LINE L1 -462 2045 1850 2575 271 122 35 chr11 122533002 122534654 -26248818 - HAL1 LINE L1 -710 1797 2 608 358 52 55 chr11 122535098 122535758 -26247714 + L2 LINE L2 1836 2493 -821 293 380 55 25 chr11 122536383 122536657 -26246815 + L2 LINE L2 2484 2765 -549 1634 153 87 7 chr11 122537287 122537562 -26245910 - AluJb SINE Alu -15 297 1 1776 167 3 7 chr11 122537958 122538245 -26245227 + AluJo SINE Alu 1 286 -26 1893 220 95 55 chr11 122538487 122539161 -26244311 - L1ME2 LINE L1 -19 6145 5445 184 324 69 10 chr11 122539191 122539293 -26244179 + MER5A DNA MER1_type 75 182 -7 711 289 60 13 chr11 122540010 122540242 -26243230 - MIR SINE MIR -8 254 12 305 208 44 132 chr11 122540649 122540808 -26242664 + L1ME LINE L1 733 877 -5193 275 240 19 29 chr11 122540816 122540920 -26242552 + L1ME LINE L1 936 1038 -5032 25 83 0 0 chr11 122541138 122541198 -26242274 + AT_rich Low_complexity Low_complexity 1 60 0 1797 118 14 14 chr11 122541271 122541551 -26241921 + MER1B DNA MER1_type 60 339 0 52 69 0 0 chr11 122541649 122541750 -26241722 + AT_rich Low_complexity Low_complexity 1 101 0 405 301 86 14 chr11 122541913 122542402 -26241070 - L1MEd LINE L1 -3228 3154 2631 890 129 96 6 chr11 122542878 122543056 -26240416 + L1MA8 LINE L1 6095 6288 -3 420 300 117 28 chr11 122543136 122543843 -26239629 - L1MEd LINE L1 -4006 2557 1788 34 24 0 0 chr11 122543843 122543884 -26239588 + AT_rich Low_complexity Low_complexity 1 41 0 296 144 25 25 chr11 122543944 122544062 -26239410 + (TA)n Simple_repeat Simple_repeat 1 118 0 398 266 44 47 chr11 122544072 122544458 -26239014 - L1MEd LINE L1 -4650 1732 1266 333 300 108 41 chr11 122544666 122545009 -26238463 - L1MEd LINE L1 -5313 1059 694 203 0 0 36 chr11 122545791 122545819 -26237653 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 1868 142 40 31 chr11 122545893 122546245 -26237227 + THE1B LTR MaLR 1 355 -9 1423 174 123 3 chr11 122546398 122546691 -26236781 + MER2 DNA MER2_type 17 344 -1 23 33 0 0 chr11 122546860 122546890 -26236582 + AT_rich Low_complexity Low_complexity 1 30 0 216 0 0 0 chr11 122547048 122547072 -26236400 + (T)n Simple_repeat Simple_repeat 1 24 0 666 201 87 13 chr11 122547205 122547354 -26236118 + FRAM SINE Alu 1 157 -19 3991 111 16 14 chr11 122547409 122548050 -26235422 - L1MA5A LINE L1 -4 6293 5652 2320 103 7 0 chr11 122548184 122548484 -26234988 - AluSx SINE Alu -10 302 1 1979 147 36 28 chr11 122550553 122550914 -26232558 - THE1B LTR MaLR 0 364 1 273 298 74 16 chr11 122552589 122552710 -26230762 + L2 LINE L2 1060 1187 -2127 489 251 228 67 chr11 122552710 122553187 -26230285 + L2 LINE L2 2762 3311 -2 199 139 28 0 chr11 122554132 122554168 -26229304 + L2 LINE L2 3277 3313 0 779 210 102 34 chr11 122554590 122554795 -26228677 - MER20 DNA MER1_type 0 219 1 2222 118 3 0 chr11 122554963 122555269 -26228203 - AluSq SINE Alu -6 307 1 836 300 85 18 chr11 122555293 122555743 -26227729 - ERVL LTR ERVL -2024 3461 2971 2265 73 14 10 chr11 122556879 122557168 -26226304 + AluSg SINE Alu 1 290 -20 429 217 118 12 chr11 122558020 122558181 -26225291 - MIR SINE MIR -65 197 20 274 276 18 32 chr11 122559014 122559132 -26224340 - MIR SINE MIR -90 118 4 483 297 6 39 chr11 122559369 122559551 -26223921 + MIR3 SINE MIR 6 181 -27 325 239 0 0 chr11 122562812 122562879 -26220593 - L2 LINE L2 0 3313 3247 209 253 121 30 chr11 122563375 122563474 -26219998 + MIR3 SINE MIR 71 178 -30 909 151 200 0 chr11 122563483 122563668 -26219804 - L1M4 LINE L1 -423 5755 5534 465 179 200 7 chr11 122563859 122563999 -26219473 - MER5A DNA MER1_type -3 186 20 482 303 102 40 chr11 122564330 122564653 -26218819 - ERVL LTR ERVL -865 4899 4557 346 280 10 0 chr11 122565166 122565266 -26218206 - MIR SINE MIR 0 262 162 184 333 44 44 chr11 122565338 122565428 -26218044 + L2 LINE L2 3148 3237 -35 981 260 4 0 chr11 122565478 122565713 -26217759 - MIR SINE MIR -22 240 5 648 300 100 39 chr11 122566499 122566959 -26216513 - LTR33 LTR ERVL -10 511 24 773 188 0 25 chr11 122567404 122567564 -26215908 + MER5A DNA MER1_type 27 182 -7 1960 242 15 13 chr11 122567942 122568401 -26215071 + LTR40b LTR ERVL 1 460 -2 1245 210 64 52 chr11 122568624 122568967 -26214505 - MLT1A1 LTR MaLR 0 365 19 437 238 79 73 chr11 122568969 122569133 -26214339 - MER5B DNA MER1_type -10 168 4 313 203 0 0 chr11 122569136 122569200 -26214272 - MIR3 SINE MIR -48 160 97 1137 233 161 104 chr11 122569787 122569956 -26213516 - L1MC4 LINE L1 0 8042 7884 2151 128 3 0 chr11 122569956 122570253 -26213219 - AluSx SINE Alu -14 298 1 1137 233 161 104 chr11 122570253 122570926 -26212546 - L1MC4 LINE L1 -158 7884 7152 592 282 103 70 chr11 122571274 122571951 -26211521 - L2 LINE L2 -25 3247 2553 1687 230 35 16 chr11 122573117 122573576 -26209896 - MLT1J LTR MaLR 0 511 12 218 32 32 0 chr11 122573804 122573835 -26209637 + (TCCA)n Simple_repeat Simple_repeat 2 33 0 216 360 63 27 chr11 122573842 122573953 -26209519 - L2 LINE L2 -17 3255 3141 446 325 114 20 chr11 122574020 122574275 -26209197 - L2 LINE L2 -7 3265 2987 390 227 70 23 chr11 122577322 122577378 -26206094 + MER112 DNA MER1_type 1 53 -207 2250 152 23 30 chr11 122577378 122577773 -26205699 - MSTD LTR MaLR 0 396 5 390 227 70 23 chr11 122577773 122577844 -26205628 + MER112 DNA MER1_type 53 134 -126 267 289 26 0 chr11 122577938 122578014 -26205458 + MER112 DNA MER1_type 181 258 -2 1122 287 113 30 chr11 122578066 122578151 -26205321 - L1MC4a LINE L1 -743 5821 5744 2136 111 16 7 chr11 122578151 122578458 -26205014 - AluSx SINE Alu -2 310 1 1122 287 113 30 chr11 122578458 122578634 -26204838 - L1MC4a LINE L1 -820 5744 5584 1910 122 43 0 chr11 122578634 122578938 -26204534 - L1PB1 LINE L1 0 6151 5835 1122 287 113 30 chr11 122578938 122579774 -26203698 - L1MC4a LINE L1 -980 5584 5142 2207 161 42 74 chr11 122579788 122580261 -26203211 - LTR32 LTR ERVL 0 471 14 2089 114 23 57 chr11 122580352 122580739 -26202733 + THE1C LTR MaLR 1 374 -1 256 331 78 9 chr11 122580782 122581205 -26202267 - L1MC4a LINE L1 -1538 5026 4575 788 236 54 33 chr11 122581337 122581578 -26201894 + MIR SINE MIR 17 262 0 356 330 69 11 chr11 122582218 122582406 -26201066 - MIR SINE MIR -12 250 52 527 274 107 12 chr11 122582600 122582768 -26200704 + MER91A DNA MER1_type 13 196 0 4001 161 95 10 chr11 122584219 122585001 -26198471 - L1MC3 LINE L1 -23 7762 6915 2617 197 104 23 chr11 122585001 122585163 -26198309 - L1M LINE L1 -825 5321 5173 2500 68 0 16 chr11 122585163 122585471 -26198001 - AluSp SINE Alu -9 304 2 2617 197 104 23 chr11 122585471 122585913 -26197559 - L1M LINE L1 -973 5173 4644 1445 239 30 27 chr11 122585913 122586286 -26197186 - MLT1A2 LTR MaLR 0 374 1 2617 197 104 23 chr11 122586286 122586477 -26196995 - L1M LINE L1 -1502 4644 4470 1261 162 37 18 chr11 122586477 122586791 -26196681 - L1MCb LINE L1 -4675 2070 1563 2122 207 21 25 chr11 122586797 122587280 -26196192 - L1MCb LINE L1 -5008 1038 551 952 281 114 26 chr11 122587554 122588098 -26195374 - L1MCb LINE L1 -5704 341 1 218 250 42 56 chr11 122588871 122588943 -26194529 + MIR SINE MIR 73 143 -119 * 367 281 58 0 chr11 122588938 122589077 -26194395 - MIR SINE MIR -3 259 113 225 268 0 14 chr11 122589106 122589177 -26194295 + MIR SINE MIR 180 249 -13 370 275 86 12 chr11 122589226 122589432 -26194040 - L1ME3A LINE L1 -6 6164 5934 4007 46 2 33 chr11 122589458 122589841 -26193631 - L1PA5 LINE L1 0 6154 5790 2263 99 0 13 chr11 122589841 122590144 -26193328 - AluY SINE Alu -11 300 2 4007 46 2 33 chr11 122590144 122590278 -26193194 - L1PA5 LINE L1 -364 5790 5653 1794 221 56 27 chr11 122590341 122590789 -26192683 - MLT1C LTR MaLR 0 467 7 188 232 95 53 chr11 122590864 122590959 -26192513 - L2 LINE L2 -4 3268 3170 444 202 138 60 chr11 122593466 122593787 -26189685 - MLT1G1 LTR MaLR -24 571 139 285 149 0 60 chr11 122593846 122593913 -26189559 - MLT1G1 LTR MaLR -460 82 20 282 200 11 21 chr11 122594060 122594155 -26189317 + CT-rich Low_complexity Low_complexity 4 97 0 2729 178 44 39 chr11 122594165 122594761 -26188711 - L1MB8 LINE L1 -36 6142 5544 318 287 175 30 chr11 122596019 122596287 -26187185 + L3 LINE CR1 1257 1563 -14 1924 155 0 14 chr11 122596391 122596681 -26186791 - AluSx SINE Alu -24 288 3 302 199 104 145 chr11 122597277 122597574 -26185898 + L2 LINE L2 3027 3311 -2 740 295 65 34 chr11 122599108 122599556 -26183916 - L1ME4a LINE L1 -45 6076 5615 478 240 47 33 chr11 122600537 122600687 -26182785 + MER5A DNA MER1_type 1 152 -37 380 229 9 0 chr11 122600879 122600988 -26182484 + (TG)n Simple_repeat Simple_repeat 1 110 0 771 209 40 6 chr11 122601427 122601604 -26181868 + MIR SINE MIR 30 212 -50 1340 162 46 217 chr11 122601604 122601876 -26181596 + L1P LINE L1 4752 5069 -1077 1124 76 0 0 chr11 122601876 122602008 -26181464 + AluSq/x SINE Alu 1 132 -181 1971 151 16 3 chr11 122602011 122602316 -26181156 + AluSx SINE Alu 1 309 -3 1340 162 46 217 chr11 122602316 122602605 -26180867 + L1P LINE L1 5071 5329 -817 1889 71 0 0 chr11 122602750 122602976 -26180496 - AluSc SINE Alu -10 299 74 2486 309 87 41 chr11 122603711 122605662 -26177810 + L2 LINE L2 702 2749 -565 377 307 133 21 chr11 122605849 122606090 -26177382 + L2 LINE L2 3005 3272 -41 410 295 20 79 chr11 122606371 122606588 -26176884 + MIR SINE MIR 3 206 -56 791 295 29 16 chr11 122607965 122608209 -26175263 + MIR SINE MIR 12 258 -4 2210 101 0 3 chr11 122608627 122608925 -26174547 + AluSq SINE Alu 1 297 -16 520 242 32 74 chr11 122609531 122609721 -26173751 + MIR SINE MIR 9 190 -72 516 316 58 9 chr11 122610024 122610249 -26173223 - MIR SINE MIR -11 251 16 373 264 69 102 chr11 122612358 122612574 -26170898 + MIR SINE MIR 47 255 -7 410 208 42 21 chr11 122613325 122613421 -26170051 + MIR SINE MIR 56 153 -109 1219 181 27 43 chr11 122613785 122614240 -26169232 + MLT1D LTR MaLR 1 505 0 2028 171 68 114 chr11 122614419 122615009 -26168463 - MLT1F1 LTR MaLR -3 564 2 1447 95 0 0 chr11 122615269 122615458 -26168014 + AluSc SINE Alu 1 189 -120 2418 25 0 0 chr11 122615886 122616209 -26167263 - AluYa5 SINE Alu 0 323 1 1306 88 0 0 chr11 122616803 122616973 -26166499 - AluSp SINE Alu -10 303 134 1002 56 8 0 chr11 122616973 122617098 -26166374 + AluSp SINE Alu 16 141 -172 946 261 43 9 chr11 122617308 122617691 -26165781 + LTR16C LTR ERVL 1 440 -51 836 252 44 13 chr11 122617786 122618012 -26165460 + MIR SINE MIR 6 238 -24 204 342 42 42 chr11 122618040 122618160 -26165312 + L2 LINE L2 2403 2522 -792 1954 155 113 6 chr11 122618189 122618551 -26164921 + MSTA LTR MaLR 1 401 -27 305 100 20 0 chr11 122618552 122618602 -26164870 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 2272 87 13 0 chr11 122618735 122619035 -26164437 - AluSx SINE Alu -8 304 1 385 293 170 33 chr11 122620007 122620219 -26163253 - MIR SINE MIR -6 256 16 510 283 17 12 chr11 122620240 122620413 -26163059 - MER5B DNA MER1_type -4 174 1 328 298 236 0 chr11 122620558 122620719 -26162753 - MIR SINE MIR -15 247 49 717 291 102 14 chr11 122620864 122621139 -26162333 - MLT1I LTR MaLR -8 401 103 578 251 99 11 chr11 122621745 122621936 -26161536 - L2 LINE L2 -12 3301 3094 294 143 0 0 chr11 122621951 122622014 -26161458 + (TG)n Simple_repeat Simple_repeat 1 63 0 264 303 97 46 chr11 122622991 122623186 -26160286 + MIR SINE MIR 2 206 -56 370 200 56 44 chr11 122623360 122623450 -26160022 - L3 LINE CR1 -1 1576 1486 263 169 0 34 chr11 122623558 122623617 -26159855 + L2 LINE L2 3255 3311 -2 452 347 69 14 chr11 122623624 122623975 -26159497 - L3 LINE CR1 -85 1492 1029 * 502 209 68 120 chr11 122623969 122624203 -26159269 - MIR SINE MIR 0 262 41 302 261 0 0 chr11 122624211 122624280 -26159192 - L2 LINE L2 0 3313 3245 357 242 56 111 chr11 122624371 122624569 -26158903 + L2 LINE L2 3125 3311 -2 1319 345 74 12 chr11 122624739 122625319 -26158153 - L3 LINE CR1 -534 1043 428 219 269 0 64 chr11 122626113 122626191 -26157281 + L2 LINE L2 3195 3267 -5 820 261 74 10 chr11 122626780 122626983 -26156489 - MIR SINE MIR 0 262 47 209 196 0 107 chr11 122626991 122627047 -26156425 - L2 LINE L2 -74 3239 3190 392 340 48 0 chr11 122627652 122627799 -26155673 - MER91A DNA MER1_type -21 175 22 261 273 52 13 chr11 122628663 122628740 -26154732 - L2 LINE L2 -2 3311 3232 262 220 88 121 chr11 122629825 122630007 -26153465 - MIR SINE MIR -50 212 37 330 226 12 48 chr11 122630239 122630323 -26153149 - MIR3 SINE MIR -27 181 101 21 57 0 0 chr11 122631771 122631806 -26151666 + AT_rich Low_complexity Low_complexity 1 35 0 519 176 96 24 chr11 122632563 122632688 -26150784 - MER69 DNA AcHobo -4 2522 2389 204 97 0 0 chr11 122632779 122632810 -26150662 + (CA)n Simple_repeat Simple_repeat 1 31 0 186 314 97 40 chr11 122632935 122633059 -26150413 - MIR SINE MIR -100 162 32 312 294 48 24 chr11 122634237 122634363 -26149109 - MIR SINE MIR -29 233 105 256 365 64 6 chr11 122634393 122634549 -26148923 - MIR SINE MIR -14 248 84 1972 106 31 3 chr11 122635018 122635310 -26148162 - AluSx SINE Alu -12 300 1 2105 208 108 10 chr11 122635679 122636169 -26147303 - MLT1F LTR MaLR -4 538 1 1669 223 94 29 chr11 122637377 122637865 -26145607 + MLT2B1 LTR ERVL 1 520 0 390 323 68 16 chr11 122640694 122640886 -26142586 - MIR SINE MIR -5 257 56 2522 44 0 16 chr11 122641030 122641346 -26142126 - AluY SINE Alu 0 311 1 238 217 83 0 chr11 122641368 122641428 -26142044 - L2 LINE L2 0 3313 3249 433 293 38 45 chr11 122641688 122641845 -26141627 + MIR SINE MIR 57 212 -50 2887 262 104 40 chr11 122643390 122645426 -26138046 + L1ME LINE L1 22 2136 -3944 432 315 82 11 chr11 122645436 122645620 -26137852 + MIR SINE MIR 53 249 -13 272 261 7 99 chr11 122646335 122646477 -26136995 - L2 LINE L2 -5 3308 3180 194 362 97 46 chr11 122647452 122647648 -26135824 + L2 LINE L2 2985 3190 -82 2507 157 47 0 chr11 122648513 122648920 -26134552 - MSTB LTR MaLR 0 426 1 688 318 39 55 chr11 122648933 122649621 -26133851 - L2 LINE L2 -5 3267 2589 285 122 0 0 chr11 122649639 122649680 -26133792 - MSTB LTR MaLR 0 426 386 1841 143 65 0 chr11 122649680 122650005 -26133467 + AluSx SINE Alu 1 344 0 5477 107 18 15 chr11 122650140 122650798 -26132674 + L1PA16 LINE L1 5297 5952 -214 2311 94 0 0 chr11 122650798 122651107 -26132365 + AluSq SINE Alu 1 309 -4 5477 107 18 15 chr11 122651107 122651141 -26132331 + L1PA16 LINE L1 5952 5984 -182 1743 123 66 81 chr11 122651141 122651296 -26132176 + THE1C LTR MaLR 1 157 -218 1961 125 0 25 chr11 122651296 122651616 -26131856 - AluSx SINE Alu 0 312 1 1743 123 66 81 chr11 122651616 122651841 -26131631 + THE1C LTR MaLR 157 375 0 5477 107 18 15 chr11 122651841 122652004 -26131468 + L1PA16 LINE L1 5984 6155 -11 252 93 80 0 chr11 122652007 122652082 -26131390 + (TA)n Simple_repeat Simple_repeat 1 81 0 361 307 0 68 chr11 122652974 122653137 -26130335 - MIR SINE MIR -16 246 95 1698 221 78 49 chr11 122653633 122654122 -26129350 + MLT1D LTR MaLR 1 503 -2 1452 253 53 34 chr11 122654309 122654803 -26128669 - MLT1J LTR MaLR -8 503 1 382 317 124 31 chr11 122654887 122655243 -26128229 + L3 LINE CR1 1056 1444 -133 331 250 0 12 chr11 122656022 122656102 -26127370 - MLT1K LTR MaLR 0 588 510 620 253 45 15 chr11 122657112 122657310 -26126162 - LTR67 LTR ERVL 0 557 354 625 288 0 19 chr11 122657438 122657598 -26125874 - LTR67 LTR ERVL -399 158 2 877 272 47 4 chr11 122658153 122658388 -26125084 - MIR SINE MIR 0 262 18 606 334 111 25 chr11 122659478 122659751 -26123721 - L2 LINE L2 -2 3270 2951 1933 153 65 6 chr11 122659751 122660091 -26123381 + MLT1A1 LTR MaLR 4 363 -2 606 334 111 25 chr11 122660091 122660215 -26123257 - L2 LINE L2 -321 2951 2839 234 260 13 26 chr11 122661113 122661190 -26122282 + GA-rich Low_complexity Low_complexity 2 77 0 2092 79 0 4 chr11 122662052 122662329 -26121143 - L1PB1 LINE L1 -2 6149 5874 334 224 9 46 chr11 122662429 122662538 -26120934 - L1MC4 LINE L1 -1339 6983 1996 198 191 0 0 chr11 122662547 122662589 -26120883 + (CA)n Simple_repeat Simple_repeat 2 43 0 2649 91 12 39 chr11 122662589 122662906 -26120566 - L1P5 LINE L1 -373 5778 5473 2121 99 3 3 chr11 122662906 122663200 -26120272 - AluY SINE Alu -17 294 1 2649 91 12 39 chr11 122663200 122663288 -26120184 - L1P5 LINE L1 -678 5473 5384 241 95 71 0 chr11 122663281 122663323 -26120149 + L1P LINE L1 5346 5390 -761 * 3022 213 52 3 chr11 122664235 122664630 -26118842 + MER82 DNA MER2_type 2 439 -214 1632 188 0 10 chr11 122664630 122664923 -26118549 + AluJo SINE Alu 5 294 -18 3022 213 52 3 chr11 122664923 122665148 -26118324 + MER82 DNA MER2_type 439 652 -1 277 297 103 63 chr11 122665581 122665756 -26117716 - L3b LINE CR1 -81 1502 1321 269 291 148 20 chr11 122665926 122666090 -26117382 - MIR SINE MIR -50 212 29 322 286 119 113 chr11 122666452 122666637 -26116835 + MER91A DNA MER1_type 10 195 -1 342 270 11 6 chr11 122667080 122667254 -26116218 + (TATG)n Simple_repeat Simple_repeat 3 177 0 691 304 83 6 chr11 122667417 122667730 -26115742 + LTR33 LTR ERVL 8 344 -177 523 190 10 20 chr11 122667762 122667862 -26115610 + LTR33 LTR ERVL 423 521 0 348 257 49 75 chr11 122668469 122668741 -26114731 - MER34 LTR ERV1 0 542 334 2430 175 31 7 chr11 122669548 122670000 -26113472 + MLT2C2 LTR ERVL 1 463 -1 1898 90 12 43 chr11 122671153 122671488 -26111984 - MER51B LTR ERV1 0 377 3 317 243 40 0 chr11 122671520 122671594 -26111878 + L2 LINE L2 3193 3269 -3 222 319 47 47 chr11 122671638 122671807 -26111665 + MIR SINE MIR 68 236 -26 1465 209 72 34 chr11 122672224 122672641 -26110831 + MER63B DNA MER1_type 4 436 0 1237 284 35 35 chr11 122672815 122673237 -26110235 + MLT1J2 LTR MaLR 29 450 0 2386 131 20 3 chr11 122673326 122673678 -26109794 + MER83C LTR ERV1 5 362 -11 255 256 26 26 chr11 122673850 122673928 -26109544 - MLT1K LTR MaLR 0 588 511 230 256 70 35 chr11 122674218 122674304 -26109168 - MLT1K LTR MaLR -313 275 187 1008 193 79 31 chr11 122674761 122674989 -26108483 - MER96B DNA MER1_type? -176 241 3 26 0 0 0 chr11 122675092 122675118 -26108354 + AT_rich Low_complexity Low_complexity 1 26 0 540 273 8 8 chr11 122675127 122675248 -26108224 - LTR28 LTR ERV1 0 1020 900 1828 211 132 64 chr11 122675286 122676028 -26107444 - LTR1B LTR ERV1 -37 983 1 343 228 38 0 chr11 122676172 122676251 -26107221 - L1ME4a LINE L1 -4 6117 6036 683 264 30 51 chr11 122676252 122676548 -26106924 - MER34B LTR ERV1 0 565 276 755 295 70 29 chr11 122676807 122677224 -26106248 - L1ME4a LINE L1 -174 5947 5514 180 0 0 0 chr11 122678650 122678670 -26104802 + (T)n Simple_repeat Simple_repeat 1 20 0 180 0 0 0 chr11 122678780 122678800 -26104672 + (A)n Simple_repeat Simple_repeat 1 20 0 587 172 11 0 chr11 122678807 122678900 -26104572 + AluS SINE Alu 2 95 -217 7854 22 1 0 chr11 122678900 122679976 -26103496 + L1PA3 LINE L1 5076 6152 -3 225 196 0 0 chr11 122680033 122680079 -26103393 + A-rich Low_complexity Low_complexity 1 46 0 427 39 0 0 chr11 122680079 122680131 -26103341 + AluSq/x SINE Alu 82 133 -180 1915 136 3 3 chr11 122680135 122680430 -26103042 + AluSq SINE Alu 1 295 -18 183 80 0 0 chr11 122680738 122680763 -26102709 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 2148 231 72 22 chr11 122680853 122681407 -26102065 - MER74B LTR ERVL 0 622 41 188 368 76 35 chr11 122681411 122681555 -26101917 - L2 LINE L2 -2718 596 447 1536 226 46 20 chr11 122681555 122681905 -26101567 - MLT1A1 LTR MaLR -1 364 6 254 279 147 62 chr11 122681917 122682046 -26101426 - L2 LINE L2 -2919 395 256 252 86 0 0 chr11 122682918 122682953 -26100519 + (T)n Simple_repeat Simple_repeat 1 35 0 265 314 127 0 chr11 122734971 122735089 -26048383 - L2 LINE L2 0 3313 3181 248 348 6 85 chr11 122735124 122735288 -26048184 + L3 LINE CR1 1417 1567 -10 338 0 0 23 chr11 122735881 122735924 -26047548 + (TG)n Simple_repeat Simple_repeat 2 43 0 2291 104 0 23 chr11 122736073 122736381 -26047091 + AluSx SINE Alu 1 301 -11 1094 162 48 13 chr11 122737674 122737902 -26045570 + MER96B DNA MER1_type? 1 236 -181 228 371 49 19 chr11 122738098 122738177 -26045295 - L2 LINE L2 -245 3068 2993 2862 139 11 27 chr11 122738177 122738651 -26044821 + MLT1C LTR MaLR 2 467 0 228 371 49 19 chr11 122738651 122738776 -26044696 - L2 LINE L2 -320 2993 2858 253 315 0 62 chr11 122740640 122740770 -26042702 + MIR SINE MIR 59 180 -82 852 216 115 117 chr11 122741336 122741711 -26041761 + MLT1A1 LTR MaLR 1 365 0 235 328 17 17 chr11 122741907 122742026 -26041446 + L1ME LINE L1 5524 5642 -520 22 0 0 0 chr11 122742505 122742527 -26040945 + AT_rich Low_complexity Low_complexity 1 22 0 559 108 10 17 chr11 122742578 122742689 -26040783 - MLT1A1 LTR MaLR -292 73 1 230 333 68 8 chr11 122743400 122743532 -26039940 - LTR67 LTR ERVL 0 557 418 1992 235 52 28 chr11 122743656 122744158 -26039314 + MLT1F LTR MaLR 12 525 -17 235 314 59 17 chr11 122745013 122745131 -26038341 + L2 LINE L2 3148 3270 -2 2272 66 11 14 chr11 122746135 122746421 -26037051 - AluY SINE Alu -5 306 22 182 300 90 20 chr11 122746743 122746843 -26036629 + L2 LINE L2 2211 2317 -997 251 340 42 21 chr11 122747193 122747337 -26036135 - LTR67 LTR ERVL -315 242 96 455 277 78 72 chr11 122747406 122747767 -26035705 - MLT1K LTR MaLR 0 588 226 833 307 66 4 chr11 122748177 122748451 -26035021 - LTR16C LTR ERVL -80 411 121 22 0 0 0 chr11 122749999 122750021 -26033451 + AT_rich Low_complexity Low_complexity 1 22 0 198 164 33 16 chr11 122750136 122750197 -26033275 + CT-rich Low_complexity Low_complexity 4 65 0 2143 84 146 19 chr11 122752479 122752802 -26030670 + THE1B LTR MaLR 1 364 0 26 0 0 0 chr11 122753674 122753700 -26029772 + AT_rich Low_complexity Low_complexity 1 26 0 629 178 18 49 chr11 122753755 122753918 -26029554 - L1MA10 LINE L1 -2 6332 6175 5430 226 80 85 chr11 122753930 122756772 -26026700 - L1ME1 LINE L1 -270 5965 3108 2419 131 22 80 chr11 122756772 122757224 -26026248 + MSTB LTR MaLR 1 426 0 5430 226 80 85 chr11 122757224 122758179 -26025293 - L1ME1 LINE L1 -3127 3108 2149 820 171 4 151 chr11 122758179 122758431 -26025041 - MER58C DNA MER1_type 0 215 1 5430 226 80 85 chr11 122758431 122760001 -26023471 - L1ME1 LINE L1 -4086 2149 675 271 134 72 0 chr11 122760316 122760413 -26023059 + (TA)n Simple_repeat Simple_repeat 1 104 0 1583 293 83 18 chr11 122760505 122761096 -26022376 - MLT1G LTR MaLR 0 590 1 395 328 60 86 chr11 122761096 122761645 -26021827 - MLT1G-int LTR MaLR 0 1371 837 2185 113 3 26 chr11 122761849 122762159 -26021313 + AluSp SINE Alu 1 303 -10 548 247 50 6 chr11 122762663 122762822 -26020650 - MLT1G1 LTR MaLR -431 160 2 590 381 89 23 chr11 122763548 122764248 -26019224 - L2 LINE L2 -342 2972 2227 572 284 28 0 chr11 122765403 122765544 -26017928 + MER117 DNA MER1_type 11 155 -42 270 56 0 0 chr11 122766102 122766138 -26017334 + (TG)n Simple_repeat Simple_repeat 1 36 0 206 279 16 16 chr11 122768164 122768225 -26015247 - L2 LINE L2 0 3272 3212 22 0 0 0 chr11 122768237 122768259 -26015213 + AT_rich Low_complexity Low_complexity 1 22 0 1768 122 19 80 chr11 122768367 122768735 -26014737 - MER4A LTR ERV1 0 664 261 563 100 89 0 chr11 122768735 122768825 -26014647 - MER4A LTR ERV1 -566 98 1 257 272 59 22 chr11 122768897 122769033 -26014439 + MIR3 SINE MIR 13 153 -55 413 17 0 51 chr11 122769990 122770049 -26013423 + L1PA3 LINE L1 6100 6155 0 281 234 13 0 chr11 122770458 122770535 -26012937 + (CA)n Simple_repeat Simple_repeat 1 78 0 1240 258 123 2 chr11 122770540 122770940 -26012532 + LTR16A LTR ERVL 1 448 -2 252 175 0 0 chr11 122770947 122771010 -26012462 + (CA)n Simple_repeat Simple_repeat 2 64 0 253 278 0 0 chr11 122772104 122772176 -26011296 + L2 LINE L2 3242 3313 0 281 266 53 0 chr11 122772947 122773041 -26010431 + L2 LINE L2 3213 3311 -2 214 258 8 92 chr11 122773767 122773887 -26009585 - L3b LINE CR1 -154 1429 1320 378 291 139 13 chr11 122774244 122774402 -26009070 - MIR3 SINE MIR -11 197 20 733 211 36 26 chr11 122774412 122774606 -26008866 - MIR SINE MIR -4 258 63 497 94 12 0 chr11 122775362 122775447 -26008025 + (TG)n Simple_repeat Simple_repeat 1 86 0 203 183 0 0 chr11 122775786 122775824 -26007648 - L2 LINE L2 -34 3279 3201 290 302 78 0 chr11 122776574 122776703 -26006769 + L2 LINE L2 3134 3272 0 597 234 15 58 chr11 122776839 122777044 -26006428 - MIR SINE MIR -14 248 53 189 0 0 0 chr11 122778162 122778183 -26005289 + (A)n Simple_repeat Simple_repeat 1 21 0 319 333 112 48 chr11 122778267 122778742 -26004730 + L2 LINE L2 2804 3308 -5 377 279 78 0 chr11 122778770 122778899 -26004573 + L2 LINE L2 3133 3271 -1 901 191 38 177 chr11 122780265 122780474 -26002998 - MLT1A2 LTR MaLR -22 352 173 213 94 0 0 chr11 122780474 122780506 -26002966 + (GA)n Simple_repeat Simple_repeat 2 33 0 306 167 17 17 chr11 122780522 122780582 -26002890 - MLT1A2 LTR MaLR -212 162 103 863 308 19 22 chr11 122781258 122781576 -26001896 - L3 LINE CR1 -548 1029 713 434 273 7 22 chr11 122782108 122782247 -26001225 + MIR SINE MIR 2 138 -124 995 263 101 67 chr11 122782579 122783116 -26000356 - MLT1H1 LTR MaLR 0 555 1 207 0 0 0 chr11 122783834 122783857 -25999615 + (CTG)n Simple_repeat Simple_repeat 1 23 0 292 200 18 74 chr11 122783864 122784041 -25999431 - MIR SINE MIR 0 262 31 351 286 97 27 chr11 122784915 122785134 -25998338 - L1ME3A LINE L1 -6 6164 5925 1832 244 69 36 chr11 122785271 122785388 -25998084 - L1ME3A LINE L1 -248 5922 5810 1739 118 29 99 chr11 122785388 122785702 -25997770 - AluSx SINE Alu -16 296 5 1832 244 69 36 chr11 122785702 122786453 -25997019 - L1ME3A LINE L1 -360 5810 5023 * 4652 243 28 34 chr11 122786450 122788595 -25994877 + L1PA13 LINE L1 533 2256 -5325 12633 166 15 24 chr11 122788597 122791692 -25991780 + L1PA13 LINE L1 4485 7597 -4 1450 277 43 56 chr11 122791738 122792590 -25990882 - L1ME3A LINE L1 -1961 4185 3345 * 4157 148 20 12 chr11 122792589 122793332 -25990140 - L1PBa LINE L1 -4723 2140 1392 688 267 5 0 chr11 122793329 122793520 -25989952 - L1PBa LINE L1 -6666 197 6 * 229 133 17 83 chr11 122793596 122793656 -25989816 - MSTD LTR MaLR -84 312 257 1194 134 43 0 chr11 122793656 122793843 -25989629 - MLT2A2 LTR ERVL -86 367 173 463 184 8 32 chr11 122793843 122793968 -25989504 - L1M4 LINE L1 -837 5309 5188 286 23 23 23 chr11 122793991 122794035 -25989437 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 438 62 0 47 chr11 122794163 122794227 -25989245 - HY4 scRNA scRNA -3 90 30 23 78 0 0 chr11 122794697 122794748 -25988724 + AT_rich Low_complexity Low_complexity 1 51 0 198 0 0 0 chr11 122794789 122794811 -25988661 + (TTA)n Simple_repeat Simple_repeat 3 24 0 43284 36 23 1 chr11 122794811 122800809 -25982663 - L1PA3 LINE L1 -18 6137 7 1090 228 97 38 chr11 122800823 122801248 -25982224 - L1M4 LINE L1 -952 5194 4745 1135 270 153 24 chr11 122801313 122801769 -25981703 + MLT1H1 LTR MaLR 41 555 0 1724 195 107 8 chr11 122801911 122802265 -25981207 + MSTD LTR MaLR 8 396 0 231 322 116 8 chr11 122802265 122802386 -25981086 - L2 LINE L2 -6 3266 3133 410 268 42 28 chr11 122802892 122803034 -25980438 - MIR SINE MIR -36 226 83 539 183 67 0 chr11 122803691 122803811 -25979661 + MIR SINE MIR 85 212 -50 237 252 78 10 chr11 122804437 122804540 -25978932 + MIR3 SINE MIR 45 154 -54 211 326 39 31 chr11 122805006 122805135 -25978337 + MIR SINE MIR 63 192 -70 2429 78 10 0 chr11 122806442 122806750 -25976722 + AluY SINE Alu 1 311 0 207 0 0 0 chr11 122806921 122806944 -25976528 + (T)n Simple_repeat Simple_repeat 1 23 0 357 231 15 0 chr11 122807149 122807214 -25976258 + MER2 DNA MER2_type 280 345 0 768 233 86 13 chr11 122807465 122807697 -25975775 + MIR SINE MIR 2 250 -12 467 319 99 40 chr11 122807795 122808068 -25975404 + MER115 DNA AcHobo 144 432 -261 1953 163 48 25 chr11 122808942 122809298 -25974174 + THE1B LTR MaLR 1 364 0 229 323 26 18 chr11 122809996 122810110 -25973362 - MIR SINE MIR -63 145 47 321 240 24 40 chr11 122811092 122811217 -25972255 - MLT1J LTR MaLR -64 447 325 197 118 29 0 chr11 122811249 122811283 -25972189 + MER5B DNA MER1_type 144 178 0 286 153 0 34 chr11 122811448 122811507 -25971965 - L2 LINE L2 -183 3089 3033 326 343 29 0 chr11 122811573 122811710 -25971762 + MIR SINE MIR 119 259 -3 276 77 0 0 chr11 122811901 122811940 -25971532 + (TG)n Simple_repeat Simple_repeat 2 40 0 252 0 0 0 chr11 122812479 122812507 -25970965 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 423 0 0 0 chr11 122812506 122812553 -25970919 + (CA)n Simple_repeat Simple_repeat 1 47 0 240 35 0 0 chr11 122812999 122813028 -25970444 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 272 286 81 64 chr11 122813627 122813861 -25969611 - L2 LINE L2 -56 3216 2979 420 195 13 0 chr11 122814479 122814556 -25968916 + L2 LINE L2 3180 3257 -56 183 129 0 0 chr11 122814591 122814622 -25968850 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 488 347 34 22 chr11 122814669 122814989 -25968483 + L2 LINE L2 2587 2910 -404 372 22 0 0 chr11 122815031 122815076 -25968396 + (TG)n Simple_repeat Simple_repeat 1 45 0 207 347 13 0 chr11 122815285 122815360 -25968112 + L2 LINE L2 3197 3272 0 486 234 0 84 chr11 122815496 122815650 -25967822 - L2 LINE L2 -15 3298 3158 284 362 99 0 chr11 122816462 122816683 -25966789 - MIR SINE MIR -3 259 17 231 226 0 19 chr11 122817647 122817700 -25965772 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 533 278 141 26 chr11 122817888 122818122 -25965350 - LTR33A LTR ERVL 0 523 347 514 265 96 12 chr11 122818320 122818542 -25964930 - LTR50 LTR ERVL -308 215 1 469 301 116 27 chr11 122819274 122819533 -25963939 + MLT1K LTR MaLR 182 463 -125 283 305 184 0 chr11 122820096 122820237 -25963235 - L2 LINE L2 0 3272 3106 1765 129 19 0 chr11 122820465 122820728 -25962744 - AluY SINE Alu -15 296 29 290 315 0 27 chr11 122821229 122821340 -25962132 + MIR SINE MIR 18 125 -137 184 258 41 31 chr11 122821447 122821544 -25961928 + MIR SINE MIR 164 261 -1 498 258 63 32 chr11 122821632 122821822 -25961650 + MER117 DNA MER1_type 1 196 -1 379 264 18 36 chr11 122823409 122823519 -25959953 + MER96 DNA MER1_type? 68 175 0 308 286 111 87 chr11 122823881 122824251 -25959221 - MLT1K LTR MaLR 0 588 210 5371 131 18 20 chr11 122825626 122826742 -25956730 - L1PA16 LINE L1 -3 6163 5008 6636 188 16 118 chr11 122826748 122827471 -25956001 + L1 LINE L1 3089 3884 -2262 1157 140 1 16 chr11 122827471 122827674 -25955798 + THE1C LTR MaLR 3 198 -166 6636 188 16 118 chr11 122827674 122827686 -25955786 + L1 LINE L1 3884 3896 -2250 1648 143 101 50 chr11 122827686 122828043 -25955429 + THE1C LTR MaLR 1 375 0 6636 188 16 118 chr11 122828043 122829210 -25954262 + L1 LINE L1 3896 4980 -1166 1170 262 15 69 chr11 122829748 122830156 -25953316 - MLT1H1 LTR MaLR -169 386 1 398 290 71 24 chr11 122830323 122830368 -25953104 - MER5B DNA MER1_type 0 178 137 2318 174 56 0 chr11 122830368 122830777 -25952695 - MSTB1 LTR MaLR 0 432 1 198 91 0 0 chr11 122830782 122830815 -25952657 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 398 290 71 24 chr11 122830815 122830932 -25952540 - MER5B DNA MER1_type -44 134 2 311 254 27 0 chr11 122831102 122831212 -25952260 + (TA)n Simple_repeat Simple_repeat 2 114 0 231 279 169 37 chr11 122831374 122831510 -25951962 + MIR3 SINE MIR 44 197 -11 357 325 77 0 chr11 122831893 122832010 -25951462 - MER5A DNA MER1_type 0 189 64 287 193 0 0 chr11 122832019 122832076 -25951396 - Alu SINE Alu 0 302 246 1099 283 144 7 chr11 122832895 122833298 -25950174 + MLT1L LTR MaLR 142 599 -16 768 61 26 0 chr11 122833847 122833962 -25949510 + (TTC)n Simple_repeat Simple_repeat 2 119 0 455 132 0 0 chr11 122833963 122834031 -25949441 - AluSg/x SINE Alu -36 276 209 1382 166 0 5 chr11 122834054 122834271 -25949201 - AluSp SINE Alu -97 216 1 511 267 81 65 chr11 122835285 122835716 -25947756 + L1M4 LINE L1 3595 4032 -2114 363 294 52 0 chr11 122835718 122835854 -25947618 + L1M4 LINE L1 4108 4250 -1896 315 348 64 20 chr11 122836525 122836729 -25946743 + L1M4 LINE L1 4306 4518 -1628 1765 201 56 71 chr11 122836736 122837203 -25946269 + MLT1C LTR MaLR 7 466 -1 229 200 0 0 chr11 122837246 122837296 -25946176 - L2 LINE L2 0 3313 3264 3040 145 16 10 chr11 122837336 122837820 -25945652 - LTR45B LTR ERV1 0 489 3 656 287 178 28 chr11 122837915 122838444 -25945028 + L1M4 LINE L1 4762 5369 -777 847 214 142 67 chr11 122838558 122838945 -25944527 - MLT1D LTR MaLR 0 505 90 270 108 0 4 chr11 122839023 122839235 -25944237 + AluSx SINE Alu 1 300 0 2524 204 51 54 chr11 122839243 122839924 -25943548 - L1ME1 LINE L1 -104 6131 5453 708 188 7 0 chr11 122839912 122840050 -25943422 - L1ME1 LINE L1 -3372 2843 2705 * 4963 233 73 29 chr11 122840070 122841776 -25941696 - L1ME1 LINE L1 -4080 2316 536 1988 117 7 16 chr11 122844961 122845270 -25938202 + MSTA-int LTR MaLR 1275 1580 0 486 83 0 242 chr11 122845270 122845402 -25938070 + MSTA LTR MaLR 1 100 -328 194 233 17 0 chr11 122845774 122845834 -25937638 + GA-rich Low_complexity Low_complexity 4 64 0 441 243 106 60 chr11 122845834 122846069 -25937403 - MIR SINE MIR -6 256 11 285 347 91 0 chr11 122846382 122846503 -25936969 - L2 LINE L2 0 3313 3182 280 383 34 25 chr11 122846878 122847204 -25936268 - L2 LINE L2 -656 2658 2330 1051 266 152 40 chr11 122847696 122848499 -25934973 - MER45C DNA AcHobo -5 948 4 240 163 0 0 chr11 122849451 122849494 -25933978 + CT-rich Low_complexity Low_complexity 4 46 0 1855 159 0 10 chr11 122849510 122849800 -25933672 - AluJo SINE Alu -15 297 11 641 184 105 20 chr11 122850421 122850573 -25932899 + MIR SINE MIR 23 187 -75 898 10 0 0 chr11 122850611 122850712 -25932760 - AluYa5/8 SINE Alu -2 309 209 392 292 69 14 chr11 122851031 122851369 -25932103 + LTR16B LTR ERVL 53 460 -4 627 246 73 30 chr11 122851610 122851842 -25931630 - MIR SINE MIR 0 262 21 396 261 92 58 chr11 122852349 122852556 -25930916 + MIR SINE MIR 31 244 -18 226 203 266 0 chr11 122852732 122852796 -25930676 + MLT1J2 LTR MaLR 101 181 -269 505 246 51 29 chr11 122852831 122853006 -25930466 + MLT1J2 LTR MaLR 266 444 -6 192 284 34 91 chr11 122853042 122853130 -25930342 + MIR3 SINE MIR 110 192 -16 299 299 23 0 chr11 122853723 122853810 -25929662 + GA-rich Low_complexity Low_complexity 4 92 0 548 162 105 9 chr11 122853983 122854088 -25929384 + FLAM_C SINE Alu 13 127 -16 259 125 109 0 chr11 122854096 122854160 -25929312 + MIR SINE MIR 138 208 -54 919 175 0 0 chr11 122854199 122854321 -25929151 + MER2 DNA MER2_type 1 122 -223 445 225 0 0 chr11 122854321 122854401 -25929071 - Tigger3(Golem) DNA MER2_type -3 3026 2947 2715 129 0 3 chr11 122854401 122854774 -25928698 + MER1A DNA MER1_type 1 372 -157 774 194 56 24 chr11 122854881 122855133 -25928339 - Charlie2 DNA MER1_type -426 2436 2177 1223 254 144 24 chr11 122855137 122855891 -25927581 - Charlie2b DNA MER1_type -1521 1261 327 278 289 50 0 chr11 122856371 122856492 -25926980 + LTR67 LTR ERVL 431 557 0 829 254 69 43 chr11 122856495 122856798 -25926674 - Charlie2b DNA MER1_type -2466 316 6 189 204 20 0 chr11 122857083 122857132 -25926340 + L2 LINE L2 3264 3313 0 224 337 74 40 chr11 122857228 122857430 -25926042 + MIR SINE MIR 10 218 -44 2583 41 0 0 chr11 122860671 122860964 -25922508 + AluY SINE Alu 10 302 -9 209 108 27 0 chr11 122861367 122861404 -25922068 + (TG)n Simple_repeat Simple_repeat 2 39 0 840 222 33 6 chr11 122861537 122861717 -25921755 - MER91B DNA MER1_type -5 185 1 393 302 47 0 chr11 122863077 122863183 -25920289 + L2 LINE L2 3199 3309 -4 378 329 43 31 chr11 122863189 122863350 -25920122 - L2 LINE L2 0 3272 3110 513 229 103 52 chr11 122864253 122864715 -25918757 + MLT1H1 LTR MaLR 44 553 -2 191 256 144 40 chr11 122865976 122866101 -25917371 - L3 LINE CR1 -1164 413 276 276 279 75 3 chr11 122866759 122866913 -25916559 - MIR3 SINE MIR -1 207 6 438 320 100 20 chr11 122867238 122867438 -25916034 - L2 LINE L2 0 3313 3098 621 194 0 0 chr11 122867441 122867549 -25915923 + MER94 DNA DNA 27 134 0 223 210 16 16 chr11 122870089 122870151 -25913321 + CT-rich Low_complexity Low_complexity 1 62 0 270 0 0 0 chr11 122870165 122870195 -25913277 + (CA)n Simple_repeat Simple_repeat 2 31 0 314 258 79 34 chr11 122870311 122870400 -25913072 - MIR3 SINE MIR -11 197 105 244 289 88 50 chr11 122870651 122870810 -25912662 - MIR3 SINE MIR -40 168 4 297 0 0 0 chr11 122871209 122871242 -25912230 + (CA)n Simple_repeat Simple_repeat 1 33 0 277 291 133 18 chr11 122871345 122871510 -25911962 + MIR SINE MIR 79 262 0 236 113 38 38 chr11 122871939 122871992 -25911480 + MLT1K LTR MaLR 517 569 -19 260 26 0 26 chr11 122872009 122872047 -25911425 + (ATG)n Simple_repeat Simple_repeat 3 39 0 246 128 0 0 chr11 122872174 122872213 -25911259 + (TG)n Simple_repeat Simple_repeat 1 39 0 1945 113 0 8 chr11 122872291 122872557 -25910915 + AluSq SINE Alu 1 264 -49 790 189 18 12 chr11 122873559 122873728 -25909744 - MER5B DNA MER1_type -4 174 5 723 253 34 11 chr11 122874917 122875095 -25908377 - MIR SINE MIR 0 262 81 2326 165 57 5 chr11 122875142 122875547 -25907925 - MSTB LTR MaLR 0 426 1 215 241 35 17 chr11 122877316 122877374 -25906098 + L3 LINE CR1 1511 1569 -8 367 286 31 0 chr11 122877455 122877553 -25905919 - MIR SINE MIR -59 203 103 251 350 58 0 chr11 122877573 122877676 -25905796 + MIR SINE MIR 9 117 -145 198 282 0 0 chr11 122877704 122877743 -25905729 + MIR SINE MIR 218 256 -6 225 327 40 20 chr11 122877769 122877870 -25905602 - MIR SINE MIR -156 106 4 531 325 68 17 chr11 122877902 122878139 -25905333 - MIR SINE MIR -12 250 2 2048 157 19 25 chr11 122879542 122879906 -25903566 + THE1B LTR MaLR 1 362 -2 2251 125 6 3 chr11 122879906 122880217 -25903255 + AluSx SINE Alu 1 312 0 259 381 27 7 chr11 122880318 122880465 -25903007 + MIR SINE MIR 100 249 -13 1084 123 7 0 chr11 122881909 122882063 -25901409 - AluSg/x SINE Alu -2 310 156 347 369 31 25 chr11 122882572 122882732 -25900740 + L2 LINE L2 3112 3272 0 365 312 0 29 chr11 122883833 122884003 -25899469 + CT-rich Low_complexity Low_complexity 4 168 0 2866 187 16 5 chr11 122884389 122884941 -25898531 + L1MB4 LINE L1 5620 6177 -3 2269 93 0 33 chr11 122885006 122885337 -25898135 + AluY SINE Alu 1 321 0 355 326 114 40 chr11 122885369 122885596 -25897876 - L1ME3A LINE L1 -1 6169 5926 430 332 134 0 chr11 122885725 122885912 -25897560 - MIR SINE MIR 0 262 51 634 298 115 54 chr11 122886664 122887332 -25896140 - L2 LINE L2 -8 3264 2548 322 225 194 6 chr11 122888035 122888195 -25895277 - LTR16A LTR ERVL -22 428 239 1285 357 61 15 chr11 122888492 122888535 -25894937 - ERVL LTR ERVL -202 5283 5243 2072 128 68 46 chr11 122888535 122888902 -25894570 + THE1C LTR MaLR 1 375 0 1285 357 61 15 chr11 122888902 122889125 -25894347 - ERVL LTR ERVL -242 5243 5032 1906 124 8 0 chr11 122889125 122889384 -25894088 - AluSg SINE Alu -1 309 49 1285 357 61 15 chr11 122889384 122890169 -25893303 - ERVL LTR ERVL -453 5032 4183 375 253 11 32 chr11 122890245 122890340 -25893132 - MIR SINE MIR -116 146 54 266 239 72 116 chr11 122891319 122891457 -25892015 - MIR SINE MIR -11 251 120 684 253 127 2 chr11 122891523 122891718 -25891754 - MIR SINE MIR -56 206 2 221 296 22 30 chr11 122893282 122893417 -25890055 + (CATA)n Simple_repeat Simple_repeat 3 136 0 242 338 0 0 chr11 122893456 122893536 -25889936 + L2 LINE L2 3234 3313 0 184 224 103 35 chr11 122894263 122894321 -25889151 - MIR SINE MIR -166 96 35 420 257 178 13 chr11 122894636 122894788 -25888684 + MER91A DNA MER1_type 17 193 -3 375 366 64 0 chr11 122895151 122895323 -25888149 + L3 LINE CR1 1260 1442 -135 2261 111 0 23 chr11 122896062 122896368 -25887104 + AluSc SINE Alu 1 299 -10 201 323 54 46 chr11 122896729 122896859 -25886613 + L3 LINE CR1 1441 1571 -6 279 57 472 0 chr11 122897079 122897132 -25886340 - MADE1 DNA Mariner -2 78 1 1663 179 3 30 chr11 122897146 122897447 -25886025 - AluJb SINE Alu -19 293 1 645 235 118 41 chr11 122897451 122897672 -25885800 - MIR SINE MIR -11 251 14 267 214 129 81 chr11 122899763 122899929 -25883543 + MIR3 SINE MIR 11 174 -59 509 301 47 19 chr11 122900971 122901184 -25882288 - MLT1K LTR MaLR -44 544 326 1935 188 25 3 chr11 122901301 122901658 -25881814 + MLT1A1 LTR MaLR 1 365 0 6884 119 63 25 chr11 122902852 122904036 -25879436 - Tigger3b DNA MER2_type 0 1231 2 308 274 14 0 chr11 122904058 122904131 -25879341 - MIR3 SINE MIR 0 208 135 2210 107 21 0 chr11 122904359 122904649 -25878823 - AluY SINE Alu -15 296 1 470 155 52 0 chr11 122904679 122904776 -25878696 - L1MC4 LINE L1 -13 8029 7928 194 161 0 18 chr11 122904819 122904875 -25878597 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 1555 179 68 8 chr11 122904894 122905247 -25878225 - L1MC4 LINE L1 -142 7900 7527 2234 110 0 0 chr11 122906413 122906734 -25876738 + AluY SINE Alu 1 321 0 249 343 22 22 chr11 122906972 122907106 -25876366 + L2 LINE L2 3180 3313 0 200 286 0 18 chr11 122907521 122907577 -25875895 + GA-rich Low_complexity Low_complexity 4 58 0 2116 131 7 0 chr11 122908463 122908760 -25874712 - AluSx SINE Alu -3 309 11 206 271 42 97 chr11 122908841 122908985 -25874487 + MIR SINE MIR 57 192 -70 233 254 30 15 chr11 122909313 122909380 -25874092 - MIR SINE MIR -62 146 79 815 188 12 0 chr11 122910163 122910323 -25873149 + MER58B DNA MER1_type 180 341 0 431 314 41 12 chr11 122910327 122910496 -25872976 - MIR SINE MIR -61 201 28 2160 128 0 22 chr11 122913592 122913911 -25869561 + AluSx SINE Alu 1 312 0 6794 161 21 20 chr11 122915836 122917213 -25866259 + L1MA8 LINE L1 3934 5312 -834 333 126 0 2 chr11 122917216 122917471 -25866001 + AluSq SINE Alu 4 308 0 5401 124 42 14 chr11 122917471 122918433 -25865039 + L1MA8 LINE L1 5300 6288 -3 685 307 33 12 chr11 122918479 122918720 -25864752 + L3 LINE CR1 1305 1550 -27 326 260 201 30 chr11 122918826 122918995 -25864477 - MIR SINE MIR -6 256 59 195 129 0 0 chr11 122921775 122921806 -25861666 + (GA)n Simple_repeat Simple_repeat 2 32 0 486 0 0 0 chr11 122923545 122923599 -25859873 + (TATG)n Simple_repeat Simple_repeat 3 56 0 1504 156 72 15 chr11 122923599 122923862 -25859610 - AluJb SINE Alu -34 278 1 350 247 48 86 chr11 122924454 122924640 -25858832 - MLT1J2 LTR MaLR 0 450 272 241 333 36 22 chr11 122924673 122924811 -25858661 - MLT1I LTR MaLR -200 209 70 271 153 0 85 chr11 122925794 122925853 -25857619 - MLT1K LTR MaLR -24 564 511 720 188 0 0 chr11 122926146 122926280 -25857192 + FLAM_A SINE Alu 4 137 0 269 349 47 19 chr11 122928349 122928455 -25855017 + L2 LINE L2 3162 3270 -2 226 277 15 0 chr11 122928530 122928595 -25854877 + MLT1I LTR MaLR 72 137 -272 326 250 31 55 chr11 122928692 122928820 -25854652 + MLT1J1 LTR MaLR 266 390 -56 1144 199 62 84 chr11 122928874 122929245 -25854227 - MLT1A2 LTR MaLR 0 374 12 227 356 26 61 chr11 122929906 122930021 -25853451 + MIR SINE MIR 23 133 -75 201 39 0 0 chr11 122931599 122931625 -25851847 + (TC)n Simple_repeat Simple_repeat 1 26 0 3806 102 2 39 chr11 122932660 122933246 -25850226 - MER34B LTR ERV1 0 565 2 1587 226 30 84 chr11 122934106 122934277 -25849195 + MER34 LTR ERV1 2 181 -361 4075 133 41 5 chr11 122934277 122934906 -25848566 + MER39B LTR ERV1 2 653 0 1587 226 30 84 chr11 122934906 122935306 -25848166 + MER34 LTR ERV1 181 542 0 319 274 49 20 chr11 122935782 122935884 -25847588 - MIR SINE MIR -59 149 45 730 288 121 67 chr11 122937134 122937689 -25845783 - MLT1K LTR MaLR -2 586 2 200 366 40 0 chr11 122937695 122937796 -25845676 - MIR SINE MIR -111 151 47 4123 169 86 9 chr11 122937821 122938588 -25844884 + LTR1B LTR ERV1 1 826 0 29 28 0 0 chr11 122938803 122938839 -25844633 + AT_rich Low_complexity Low_complexity 1 36 0 276 172 0 0 chr11 122938996 122939054 -25844418 + (TG)n Simple_repeat Simple_repeat 2 59 0 228 203 0 31 chr11 122939220 122939284 -25844188 - LTR67 LTR ERVL 0 557 496 365 346 46 0 chr11 122939369 122939499 -25843973 + MER91A DNA MER1_type 38 173 -23 1319 177 46 122 chr11 122941488 122941883 -25841589 + MLT1A1 LTR MaLR 1 365 0 459 351 118 28 chr11 122942105 122942800 -25840672 + L2 LINE L2 2283 3048 -224 779 285 69 16 chr11 122943207 122943453 -25840019 + MIR SINE MIR 3 261 -1 480 297 85 37 chr11 122944275 122944521 -25838951 - L2 LINE L2 -9 3263 3006 2478 68 0 23 chr11 122945084 122945392 -25838080 + AluY SINE Alu 1 301 -10 181 359 0 0 chr11 122945619 122945672 -25837800 - L2 LINE L2 -2910 404 352 454 295 96 13 chr11 122946288 122946444 -25837028 - MIR3 SINE MIR -17 191 23 755 235 95 33 chr11 122946602 122946623 -25836849 + MIR SINE MIR 5 23 -239 364 235 132 75 chr11 122946623 122947155 -25836317 + MER34B LTR ERV1 4 565 0 755 235 95 33 chr11 122947155 122947376 -25836096 + MIR SINE MIR 23 262 0 254 362 16 8 chr11 122947370 122947497 -25835975 + MER5A DNA MER1_type 37 164 -25 * 351 289 26 77 chr11 122947655 122947811 -25835661 + MER5A DNA MER1_type 42 189 0 241 402 52 0 chr11 122951261 122951435 -25832037 + MIR SINE MIR 78 260 -2 551 286 58 34 chr11 122952901 122953107 -25830365 + MIR SINE MIR 46 256 -6 1105 302 123 13 chr11 122953178 122954000 -25829472 - L2 LINE L2 0 3313 2246 4131 40 2 0 chr11 122954000 122954497 -25828975 - L1PA4 LINE L1 -3 6152 5655 1105 302 123 13 chr11 122954497 122954652 -25828820 - L2 LINE L2 -1067 2246 2109 261 276 0 58 chr11 122955510 122955597 -25827875 + L2 LINE L2 3191 3272 0 638 329 101 4 chr11 122956116 122956353 -25827119 - MIR SINE MIR 0 262 3 643 168 191 8 chr11 122957301 122957432 -25826040 - MER5A DNA MER1_type 0 189 35 974 250 135 52 chr11 122957456 122957935 -25825537 - MLT1L LTR MaLR -58 453 4 464 259 120 64 chr11 122958510 122958614 -25824858 + L2 LINE L2 2919 3016 -297 1312 162 44 13 chr11 122958614 122958842 -25824630 + MER46A DNA MER2_type 2 236 0 464 259 120 64 chr11 122958842 122959111 -25824361 + L2 LINE L2 3016 3313 0 1963 201 81 9 chr11 122959306 122959748 -25823724 + MLT2B2 LTR ERVL 3 476 -39 245 263 13 0 chr11 122959748 122959824 -25823648 + (TCTA)n Simple_repeat Simple_repeat 2 78 0 256 151 0 19 chr11 122959826 122959839 -25823633 + MLT2B2 LTR ERVL 503 515 -39 940 87 11 38 chr11 122959839 122960022 -25823450 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 256 151 0 19 chr11 122960022 122960061 -25823411 + MLT2B2 LTR ERVL 515 554 0 369 43 0 0 chr11 122960739 122960786 -25822686 + (TG)n Simple_repeat Simple_repeat 2 48 0 203 88 29 0 chr11 122960897 122960931 -25822541 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 330 350 172 21 chr11 122960940 122961231 -25822241 - L2 LINE L2 -24 3248 2914 262 191 107 48 chr11 122961774 122961858 -25821614 - L1ME3A LINE L1 -5 6165 6077 1431 210 20 54 chr11 122961886 122962277 -25821195 + L1MB4 LINE L1 5694 6071 -109 951 273 73 16 chr11 122962280 122962314 -25821158 - L1ME LINE L1 -471 5682 5651 234 0 0 0 chr11 122962314 122962340 -25821132 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 951 273 73 16 chr11 122962340 122962690 -25820782 - L1ME LINE L1 -502 5651 5276 646 154 17 29 chr11 122962690 122962865 -25820607 + CT-rich Low_complexity Low_complexity 2 174 0 3822 263 82 25 chr11 122963023 122964980 -25818492 - L1ME LINE L1 -1076 5053 2977 738 270 43 34 chr11 122965332 122965565 -25817907 + MIR SINE MIR 2 236 -26 375 236 28 19 chr11 122965592 122965698 -25817774 - MIR SINE MIR -109 153 47 235 358 121 18 chr11 122965750 122966239 -25817233 - L2 LINE L2 -663 2651 2113 387 0 0 0 chr11 122967033 122967076 -25816396 + (CA)n Simple_repeat Simple_repeat 2 44 0 324 0 0 0 chr11 122967075 122967111 -25816361 + (TA)n Simple_repeat Simple_repeat 2 37 0 * 299 170 68 14 chr11 122967279 122967371 -25816101 + MLT1J2 LTR MaLR 324 395 -14 880 191 44 20 chr11 122967593 122967797 -25815675 + MER3 DNA MER1_type 1 209 0 253 279 0 0 chr11 122968990 122969051 -25814421 - MIR SINE MIR -60 148 88 397 298 8 8 chr11 122969231 122969362 -25814110 - MIR SINE MIR -78 184 54 372 326 166 30 chr11 122969891 122970843 -25812629 - L2 LINE L2 -347 2967 1887 234 207 138 35 chr11 122973098 122973185 -25810287 - L2 LINE L2 -48 3265 3170 348 322 90 34 chr11 122973506 122973739 -25809733 - L2 LINE L2 -101 3171 2926 203 318 62 70 chr11 122974045 122974174 -25809298 + L2 LINE L2 3144 3271 -1 276 77 0 0 chr11 122974234 122974273 -25809199 + (CAA)n Simple_repeat Simple_repeat 2 40 0 1088 219 9 5 chr11 122974687 122974897 -25808575 + MER58A DNA MER1_type 1 211 -13 229 299 37 15 chr11 122975130 122975264 -25808208 - L1ME LINE L1 -4630 1499 1363 289 246 16 63 chr11 122975420 122975546 -25807926 - L1ME LINE L1 -4862 1257 1138 725 206 59 18 chr11 122976093 122976263 -25807209 + MER5A DNA MER1_type 13 189 0 409 296 19 19 chr11 122976693 122976855 -25806617 + MIR SINE MIR 71 232 -30 198 191 0 0 chr11 122977216 122977263 -25806209 + (TAA)n Simple_repeat Simple_repeat 2 48 0 786 199 75 5 chr11 122977265 122977451 -25806021 - MIR SINE MIR -26 236 38 306 326 30 8 chr11 122978958 122979090 -25804382 - L2 LINE L2 -2 3270 3136 181 235 98 0 chr11 122979341 122979392 -25804080 - L2 LINE L2 -493 2821 2766 1566 203 0 31 chr11 122980281 122980602 -25802870 - AluJo SINE Alu -1 311 1 537 215 68 17 chr11 122980800 122981005 -25802467 + MIR SINE MIR 31 248 -14 745 276 63 58 chr11 122981363 122981762 -25801710 + MLT1J LTR MaLR 1 401 -110 1958 143 14 3 chr11 122981971 122982283 -25801189 - AluSx SINE Alu 0 312 1 288 301 13 26 chr11 122982696 122982849 -25800623 + MIR SINE MIR 47 197 -65 571 222 36 12 chr11 122982918 122983085 -25800387 + L1MA8 LINE L1 6121 6291 0 351 255 56 43 chr11 122983305 122983466 -25800006 - MLT1J LTR MaLR -19 492 330 277 189 95 40 chr11 122983721 122983795 -25799677 - MLT1L LTR MaLR -536 79 2 4829 196 60 14 chr11 122983888 122984741 -25798731 - L1MC3 LINE L1 0 7785 6874 486 79 0 0 chr11 122984741 122984817 -25798655 + (CA)n Simple_repeat Simple_repeat 2 77 0 4829 196 60 14 chr11 122984817 122985004 -25798468 - L1MC3 LINE L1 -911 6874 6697 361 301 26 26 chr11 122985310 122985423 -25798049 - MIR3 SINE MIR -95 113 1 479 301 197 11 chr11 122986277 122986739 -25796733 + L2 LINE L2 1768 2315 -999 501 287 29 34 chr11 122986921 122987161 -25796311 - MIR SINE MIR 0 262 25 2201 130 0 0 chr11 122987913 122988220 -25795252 - AluSc SINE Alu -2 307 1 220 333 48 8 chr11 122988312 122988438 -25795034 + MIR SINE MIR 95 225 -37 695 279 66 16 chr11 122990593 122990837 -25792635 + MIR SINE MIR 2 257 -5 321 26 0 0 chr11 122991133 122991171 -25792301 + (TG)n Simple_repeat Simple_repeat 2 39 0 1835 107 4 0 chr11 122992294 122992536 -25790936 + AluSx SINE Alu 56 298 -14 1749 205 82 18 chr11 122992776 122993215 -25790257 + MLT1C LTR MaLR 1 467 0 202 246 35 0 chr11 122993572 122993629 -25789843 - MIR SINE MIR -15 247 189 340 195 239 35 chr11 122995483 122995596 -25787876 - L2 LINE L2 0 3272 3137 1672 177 97 19 chr11 122995812 122996174 -25787298 - MLT1B LTR MaLR 0 390 1 242 311 79 83 chr11 122996739 122997183 -25786289 - L2 LINE L2 -20 3252 2811 197 349 148 20 chr11 122997477 122997821 -25785651 - L2 LINE L2 -653 2661 2274 365 355 75 45 chr11 122999362 122999630 -25783842 - L2 LINE L2 0 3272 2997 229 244 63 113 chr11 122999664 122999885 -25783587 + L2 LINE L2 3104 3313 0 206 259 0 19 chr11 122999900 122999954 -25783518 - L2 LINE L2 -323 2949 2897 433 275 131 0 chr11 123000333 123000493 -25782979 + MIR SINE MIR 81 261 -1 400 313 39 22 chr11 123000575 123000754 -25782718 - MIR SINE MIR -65 197 16 400 262 43 57 chr11 123001210 123001351 -25782121 + MLT1K LTR MaLR 1 139 -456 204 268 0 0 chr11 123001358 123001399 -25782073 - MIR SINE MIR -211 51 11 377 177 9 97 chr11 123001515 123001628 -25781844 + MER113 DNA MER1_type? 15 117 -404 545 275 6 34 chr11 123002232 123002410 -25781062 + MER5B DNA MER1_type 4 176 -2 189 132 0 0 chr11 123002851 123002889 -25780583 + (TA)n Simple_repeat Simple_repeat 2 39 0 205 333 0 0 chr11 123002902 123002977 -25780495 + (CATATA)n Simple_repeat Simple_repeat 1 75 0 395 202 52 3 chr11 123004035 123004149 -25779323 - MLT1L LTR MaLR -2 610 459 474 307 71 47 chr11 123004415 123004754 -25778718 + MLT1K LTR MaLR 142 488 -100 483 18 0 0 chr11 123006355 123006411 -25777061 + (TTCC)n Simple_repeat Simple_repeat 1 56 0 736 328 73 42 chr11 123006461 123006673 -25776799 + L2 LINE L2 1983 2187 -1127 1870 168 0 7 chr11 123006673 123006970 -25776502 - AluJb SINE Alu -17 295 1 736 328 73 42 chr11 123006970 123007537 -25775935 + L2 LINE L2 2187 2786 -528 181 299 173 0 chr11 123007941 123008068 -25775404 + L2 LINE L2 3156 3304 -9 204 158 0 0 chr11 123008777 123008815 -25774657 + GA-rich Low_complexity Low_complexity 3 40 0 1179 107 17 141 chr11 123010108 123010399 -25773073 - L1MA10 LINE L1 0 6334 6080 3136 30 0 3 chr11 123010400 123010765 -25772707 - L1PA4 LINE L1 0 6155 5792 892 170 26 100 chr11 123010784 123010948 -25772524 + L1M3 LINE L1 5511 5655 -513 2236 90 24 0 chr11 123010948 123011238 -25772234 + AluSp SINE Alu 1 297 -16 892 170 26 100 chr11 123011238 123011302 -25772170 + L1M3 LINE L1 5655 5722 -446 2028 214 65 71 chr11 123011960 123012510 -25770962 + MLT1H LTR MaLR 3 549 0 204 188 25 100 chr11 123013036 123013116 -25770356 - L2 LINE L2 -22 3250 3177 246 250 48 36 chr11 123014373 123014457 -25769015 + MIR SINE MIR 38 122 -86 983 305 121 39 chr11 123014936 123015928 -25767544 - L2 LINE L2 -571 2743 1671 2229 124 0 58 chr11 123017415 123017563 -25765909 + MER47A DNA MER2_type 9 164 -2159 2270 103 0 0 chr11 123017563 123017855 -25765617 + AluSq SINE Alu 1 292 -21 2229 124 0 58 chr11 123017855 123018086 -25765386 + MER47A DNA MER2_type 164 366 0 205 341 136 0 chr11 123018221 123018353 -25765119 + MIR SINE MIR 21 170 -92 344 183 11 108 chr11 123018390 123018483 -25764989 - L2 LINE L2 -5 3308 3225 1918 155 0 31 chr11 123018487 123018809 -25764663 + AluJo SINE Alu 1 312 0 196 156 0 0 chr11 123018810 123018842 -25764630 + MIR SINE MIR 194 225 -37 281 304 25 107 chr11 123019346 123019434 -25764038 - L2 LINE L2 -36 3236 3142 1000 253 0 18 chr11 123019434 123019659 -25763813 - MER58A DNA MER1_type -3 221 1 281 304 25 107 chr11 123019659 123019745 -25763727 - L2 LINE L2 -130 3142 3085 1809 163 10 102 chr11 123019745 123020145 -25763327 + MLT1A1 LTR MaLR 1 363 -2 281 304 25 107 chr11 123020145 123020212 -25763260 - L2 LINE L2 -187 3085 3014 243 346 71 38 chr11 123020286 123020552 -25762920 - L2 LINE L2 -680 2634 2360 383 347 24 32 chr11 123020646 123020897 -25762575 + L2 LINE L2 2625 2873 -441 926 161 0 6 chr11 123022684 123022864 -25760608 + CT-rich Low_complexity Low_complexity 2 180 0 210 107 0 0 chr11 123022864 123022892 -25760580 + (TCC)n Simple_repeat Simple_repeat 3 30 0 341 233 0 14 chr11 123023555 123023628 -25759844 - L2 LINE L2 0 3313 3242 288 272 7 136 chr11 123027137 123027284 -25756188 - L2 LINE L2 -6 3266 3139 1826 133 100 58 chr11 123028895 123029255 -25754217 + THE1C LTR MaLR 1 375 0 725 207 132 16 chr11 123029564 123029884 -25753588 - MSTD LTR MaLR 0 396 1 253 324 117 27 chr11 123030291 123030402 -25753070 + MIR3 SINE MIR 4 124 -84 445 271 113 0 chr11 123030583 123030716 -25752756 - MER117 DNA MER1_type 0 197 50 648 130 73 141 chr11 123030729 123030921 -25752551 + MER53 DNA DNA 11 189 0 416 351 71 15 chr11 123031063 123031331 -25752141 - MLT1K LTR MaLR -114 474 192 266 73 24 0 chr11 123031669 123031710 -25751762 + (GA)n Simple_repeat Simple_repeat 2 43 0 307 237 32 32 chr11 123031915 123032008 -25751464 + MIR SINE MIR 5 97 -165 2086 246 42 37 chr11 123032909 123033499 -25749973 + MLT1E LTR MaLR 1 593 0 406 321 56 32 chr11 123033499 123033747 -25749725 - MIR SINE MIR -3 259 5 454 283 133 22 chr11 123035328 123035508 -25747964 - MIR SINE MIR -25 237 38 202 299 26 13 chr11 123035641 123035718 -25747754 + L2 LINE L2 3231 3308 -5 281 279 143 62 chr11 123035889 123036211 -25747261 - LTR16C LTR ERVL -51 440 93 857 199 104 10 chr11 123037237 123037276 -25746196 - MIR SINE MIR -33 229 195 2980 185 38 8 chr11 123037276 123037810 -25745662 - MER44D DNA MER2_type 0 605 1 857 199 104 10 chr11 123037810 123037971 -25745501 - MIR SINE MIR -67 195 10 1998 188 56 17 chr11 123038243 123038652 -25744820 - LTR3 LTR ERVK -3 429 5 7447 92 2 5 chr11 123038656 123039640 -25743832 - HERVK3 LTR ERVK 0 7243 6263 3623 118 9 0 chr11 123039640 123040172 -25743300 - HERVK3 LTR ERVK -1894 5349 4813 2366 62 3 30 chr11 123040193 123040497 -25742975 + AluY SINE Alu 1 296 -15 761 177 0 28 chr11 123040515 123040656 -25742816 - HERVK3 LTR ERVK -3571 3672 3536 * 17039 125 20 13 chr11 123040640 123043265 -25740207 - HERVK3 LTR ERVK -4567 2676 34 2092 179 67 12 chr11 123043283 123043686 -25739786 - LTR3 LTR ERVK -3 429 5 541 251 108 79 chr11 123043732 123043914 -25739558 + L2 LINE L2 2561 2755 -559 2223 113 3 3 chr11 123043914 123044216 -25739256 - AluSx SINE Alu -10 302 1 541 251 108 79 chr11 123044216 123044312 -25739160 + L2 LINE L2 2755 2847 -467 283 372 9 0 chr11 123044895 123045008 -25738464 - L1ME LINE L1 -513 5726 5613 571 307 75 26 chr11 123045017 123045284 -25738188 + L2 LINE L2 3034 3313 0 322 283 230 5 chr11 123046261 123046448 -25737024 - MIR SINE MIR -25 237 9 224 208 42 0 chr11 123047033 123047081 -25736391 - L2 LINE L2 -1 3312 3263 3144 222 73 20 chr11 123048039 123049022 -25734450 + L1ME2 LINE L1 5129 6164 0 1949 209 129 42 chr11 123049225 123049801 -25733671 - L1ME LINE L1 -648 5587 4929 2195 105 7 10 chr11 123049801 123050105 -25733367 + AluSp SINE Alu 1 303 -10 1949 209 129 42 chr11 123050105 123050269 -25733203 - L1ME LINE L1 -1306 4929 4781 6630 249 69 20 chr11 123050274 123051174 -25732298 - L1ME LINE L1 -4007 2389 1535 2054 118 5 99 chr11 123051174 123051546 -25731926 - MER44D DNA MER2_type 0 609 3 6630 249 69 20 chr11 123051546 123052883 -25730589 - L1ME LINE L1 -4861 1535 42 235 243 0 40 chr11 123052973 123053047 -25730425 + MIR SINE MIR 131 201 -61 2185 125 0 0 chr11 123053264 123053561 -25729911 + AluSx SINE Alu 1 297 -15 330 328 32 16 chr11 123055280 123055405 -25728067 + L2 LINE L2 3187 3313 0 497 340 93 7 chr11 123055407 123055698 -25727774 - L3 LINE CR1 -5 1572 1257 459 301 45 20 chr11 123056136 123056335 -25727137 - MIR SINE MIR -54 208 5 196 240 40 0 chr11 123056400 123056450 -25727022 + L2 LINE L2 3261 3312 -1 217 244 11 111 chr11 123056463 123056553 -25726919 + MIR3 SINE MIR 83 163 -45 334 294 93 93 chr11 123056679 123057012 -25726460 + L2 LINE L2 2933 3265 -7 279 278 42 0 chr11 123057489 123057561 -25725911 + L2 LINE L2 3191 3265 -7 1928 163 13 0 chr11 123057687 123057987 -25725485 + AluJb SINE Alu 1 304 -8 414 0 0 0 chr11 123058444 123058490 -25724982 + (TG)n Simple_repeat Simple_repeat 2 47 0 807 291 30 26 chr11 123059309 123059671 -25723801 + MLT1I LTR MaLR 1 394 -15 235 289 118 0 chr11 123059842 123059918 -25723554 + L2 LINE L2 3163 3247 -25 304 379 17 0 chr11 123060163 123060279 -25723193 + L3 LINE CR1 1006 1123 -454 2224 104 68 22 chr11 123061076 123061431 -25722041 - THE1C LTR MaLR -2 373 3 7773 104 189 43 chr11 123061433 123062812 -25720660 - THE1C-int LTR MaLR 0 1580 1 2158 132 70 17 chr11 123062812 123063168 -25720304 - THE1C LTR MaLR 0 375 1 399 333 142 28 chr11 123063234 123063516 -25719956 - L2 LINE L2 0 3272 2959 282 314 66 52 chr11 123063602 123063889 -25719583 - L2 LINE L2 -461 2853 2563 1488 307 153 8 chr11 123065181 123065933 -25717539 + L2 LINE L2 1883 2743 -571 2220 102 0 0 chr11 123065960 123066266 -25717206 - AluSx SINE Alu 0 306 1 387 0 0 0 chr11 123066297 123066340 -25717132 + (CA)n Simple_repeat Simple_repeat 2 44 0 562 308 142 20 chr11 123066341 123066853 -25716619 + L2 LINE L2 2719 3307 -6 422 399 19 5 chr11 123066855 123067068 -25716404 - MIR SINE MIR -33 229 14 3617 204 27 25 chr11 123067580 123069216 -25714256 + L1MB3 LINE L1 4590 6183 0 2146 199 6 8 chr11 123069233 123069721 -25713751 + L1 LINE L1 4213 4699 -1447 408 323 22 15 chr11 123069829 123070065 -25713407 + LTR16A LTR ERVL 120 401 -49 469 276 15 37 chr11 123070087 123070221 -25713251 - MER91B DNA MER1_type -41 149 19 675 245 28 14 chr11 123070552 123070747 -25712725 + L1ME4a LINE L1 5122 5322 -824 243 0 0 0 chr11 123070747 123070774 -25712698 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 675 245 28 14 chr11 123070774 123070790 -25712682 + L1ME4a LINE L1 5322 5336 -810 302 324 46 46 chr11 123071116 123071375 -25712097 + L2 LINE L2 1698 1956 -1358 244 282 26 64 chr11 123071512 123071668 -25711804 + L2 LINE L2 2291 2440 -874 798 245 50 25 chr11 123071737 123071978 -25711494 + L2 LINE L2 3066 3312 -1 182 181 64 128 chr11 123072338 123072432 -25711040 - L3 LINE CR1 -452 1125 1038 287 240 132 33 chr11 123073034 123073276 -25710196 + L1ME4a LINE L1 5676 5941 -180 2197 75 7 0 chr11 123073586 123073907 -25709565 + AluSg SINE Alu 1 323 0 22 0 0 0 chr11 123074416 123074438 -25709034 + AT_rich Low_complexity Low_complexity 1 22 0 33 66 0 0 chr11 123075685 123075746 -25707726 + GC_rich Low_complexity Low_complexity 1 61 0 288 0 0 0 chr11 123075750 123075782 -25707690 + (A)n Simple_repeat Simple_repeat 1 32 0 1294 251 83 16 chr11 123076977 123077400 -25706072 - HsTC2 DNA Tc2 0 1900 1274 567 260 27 20 chr11 123077406 123077552 -25705920 - HsTC2 DNA Tc2 -1751 147 1 923 185 0 19 chr11 123077735 123077897 -25705575 + AluJb SINE Alu 138 296 -16 1935 279 92 57 chr11 123079333 123080556 -25702916 + HAL1 LINE L1 306 1570 -937 974 110 0 102 chr11 123080590 123080845 -25702627 - AluSg1 SINE Alu -19 290 62 1207 276 52 29 chr11 123083057 123083438 -25700034 + MLT1K LTR MaLR 176 565 -23 227 308 213 6 chr11 123083579 123083748 -25699724 + MIR SINE MIR 20 223 -39 308 263 61 0 chr11 123084243 123084342 -25699130 - L1MC4 LINE L1 -1324 6718 6614 487 319 24 24 chr11 123084477 123084684 -25698788 + L2 LINE L2 3107 3313 0 22 0 0 0 chr11 123085260 123085282 -25698190 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr11 123085349 123085392 -25698080 + AT_rich Low_complexity Low_complexity 1 43 0 206 281 47 0 chr11 123086685 123086749 -25696723 + MIR SINE MIR 70 136 -72 689 163 30 15 chr11 123088431 123088566 -25694906 + L1MB1 LINE L1 6026 6162 -6 192 320 167 0 chr11 123089732 123089810 -25693662 - L2 LINE L2 -15 3298 3208 983 260 93 78 chr11 123090301 123090893 -25692579 + HAL1 LINE L1 1290 1890 -617 336 234 0 0 chr11 123091041 123091118 -25692354 + HAL1 LINE L1 2072 2148 -359 384 278 6 62 chr11 123091161 123091337 -25692135 + HAL1b LINE L1 746 911 -437 2378 158 71 17 chr11 123091341 123091747 -25691725 + MSTA LTR MaLR 1 428 0 236 193 121 12 chr11 123091875 123091958 -25691514 + HAL1 LINE L1 2254 2345 -162 2212 76 3 24 chr11 123092037 123092326 -25691146 + AluY SINE Alu 1 283 -28 984 138 0 0 chr11 123092720 123092879 -25690593 + L1 LINE L1 4709 4867 -1279 1038 136 0 34 chr11 123094081 123094257 -25689215 - L1MB5 LINE L1 0 6174 6005 263 319 0 0 chr11 123094335 123094407 -25689065 + L2 LINE L2 3169 3240 -32 343 306 52 29 chr11 123094510 123094683 -25688789 - MIR SINE MIR -80 182 6 202 253 114 25 chr11 123095218 123095297 -25688175 - MIR SINE MIR -71 191 106 2419 131 30 6 chr11 123095374 123095740 -25687732 + THE1C LTR MaLR 1 375 0 27 62 0 0 chr11 123095980 123096028 -25687444 + AT_rich Low_complexity Low_complexity 1 48 0 246 224 0 0 chr11 123096380 123096429 -25687043 + (TCTA)n Simple_repeat Simple_repeat 3 51 0 446 144 24 40 chr11 123096430 123096555 -25686917 + CT-rich Low_complexity Low_complexity 4 126 0 252 264 18 0 chr11 123096569 123096732 -25686740 + (TCTA)n Simple_repeat Simple_repeat 3 168 0 501 344 16 16 chr11 123096958 123097147 -25686325 + MIR SINE MIR 5 193 -69 2335 58 0 23 chr11 123098287 123098597 -25684875 + AluY SINE Alu 1 303 -8 2150 120 0 3 chr11 123098638 123098937 -25684535 - AluSx SINE Alu -14 298 1 201 74 0 0 chr11 123098958 123098985 -25684487 + (TG)n Simple_repeat Simple_repeat 2 28 0 2090 106 11 3 chr11 123099704 123100011 -25683461 + AluSq SINE Alu 1 309 0 255 234 0 0 chr11 123100383 123100430 -25683042 - MIR SINE MIR -6 256 210 225 275 174 0 chr11 123100390 123100459 -25683013 - L2 LINE L2 -19 3253 3173 * 21 36 0 0 chr11 123102275 123102303 -25681169 + AT_rich Low_complexity Low_complexity 1 28 0 879 184 189 0 chr11 123102750 123102935 -25680537 + MER58A DNA MER1_type 4 223 -1 976 179 48 131 chr11 123103002 123103190 -25680282 + MER33 DNA MER1_type 1 141 -2444 2241 86 3 3 chr11 123103190 123103480 -25679992 - AluSx SINE Alu -22 290 1 976 179 48 131 chr11 123103480 123103643 -25679829 + MER33 DNA MER1_type 141 316 -8 180 162 0 54 chr11 123104762 123104799 -25678673 - L2 LINE L2 -48 3224 3190 330 273 47 23 chr11 123106038 123106166 -25677306 + MIR SINE MIR 82 212 -50 180 323 0 75 chr11 123109518 123109611 -25673861 + L2 LINE L2 3186 3271 -1 183 222 0 0 chr11 123110007 123110052 -25673420 + (CTA)n Simple_repeat Simple_repeat 2 46 0 297 239 262 56 chr11 123110715 123110971 -25672501 + MLT1J2 LTR MaLR 19 331 -115 1299 160 26 4 chr11 123111148 123111379 -25672093 + AluJo SINE Alu 54 289 -23 3049 194 59 18 chr11 123111426 123111619 -25671853 - MER82 DNA MER2_type -1 652 468 2253 104 19 0 chr11 123111619 123111926 -25671546 - AluSq SINE Alu 0 313 1 3049 194 59 18 chr11 123111926 123112357 -25671115 - MER82 DNA MER2_type -185 468 2 389 322 82 6 chr11 123113081 123113252 -25670220 - MIR SINE MIR 0 262 79 282 198 119 20 chr11 123114034 123114135 -25669337 - HAL1 LINE L1 -715 1792 1682 2515 150 48 5 chr11 123115007 123115426 -25668046 - L1MA6 LINE L1 -5 6295 5859 369 300 65 6 chr11 123116382 123116554 -25666918 + MIR SINE MIR 4 190 -54 465 19 0 0 chr11 123117502 123117556 -25665916 + (TC)n Simple_repeat Simple_repeat 1 54 0 672 143 0 0 chr11 123117767 123117865 -25665607 - AluSg/x SINE Alu -15 297 200 279 285 101 57 chr11 123117886 123117973 -25665499 + L2 LINE L2 3075 3157 -156 231 36 0 0 chr11 123117973 123118001 -25665471 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 279 285 101 57 chr11 123118001 123118141 -25665331 + L2 LINE L2 3157 3312 -1 1055 320 74 23 chr11 123120381 123120762 -25662710 + MLT1J LTR MaLR 1 414 -97 231 88 0 0 chr11 123120762 123120796 -25662676 + (CCTA)n Simple_repeat Simple_repeat 2 35 0 1055 320 74 23 chr11 123120796 123120899 -25662573 + MLT1J LTR MaLR 414 510 -1 241 214 0 0 chr11 123122307 123122349 -25661123 + MIR SINE MIR 204 245 -17 2066 108 0 4 chr11 123122447 123122724 -25660748 + AluSx SINE Alu 5 280 -32 24 0 0 0 chr11 123122725 123122749 -25660723 + AT_rich Low_complexity Low_complexity 1 24 0 293 333 118 27 chr11 123123696 123123993 -25659479 - L2 LINE L2 -924 2390 2067 543 170 0 102 chr11 123125183 123125330 -25658142 + L1MB2 LINE L1 6037 6168 -3 255 61 0 0 chr11 123125831 123125864 -25657608 + (CA)n Simple_repeat Simple_repeat 2 34 0 374 362 18 17 chr11 123127128 123127345 -25656127 + MIR SINE MIR 44 262 0 2121 134 16 0 chr11 123127740 123128046 -25655426 - AluSx SINE Alu -1 311 1 1555 118 27 15 chr11 123130038 123130301 -25653171 - AluSx SINE Alu 0 312 47 1371 138 22 4 chr11 123131623 123131848 -25651624 + AluJb SINE Alu 84 312 0 557 110 24 0 chr11 123131960 123132042 -25651430 - AluS SINE Alu -227 85 2 737 233 28 36 chr11 123132065 123132314 -25651158 - L1MC4 LINE L1 0 8042 7796 1482 233 78 12 chr11 123132320 123132741 -25650731 + MLT1C LTR MaLR 7 455 -12 401 184 35 26 chr11 123132744 123132858 -25650614 - L1MC4 LINE L1 -238 7804 7690 1769 161 20 0 chr11 123132871 123133175 -25650297 + AluSx SINE Alu 1 310 -2 580 85 0 21 chr11 123133175 123133269 -25650203 + (GGAA)n Simple_repeat Simple_repeat 1 92 0 653 234 0 0 chr11 123133289 123133430 -25650042 - L1MC4 LINE L1 -370 7672 7532 397 0 0 0 chr11 123133566 123133610 -25649862 + L1P3 LINE L1 5496 5539 -615 460 249 157 47 chr11 123133714 123134096 -25649376 - L1ME4a LINE L1 -139 5982 5559 1721 83 17 9 chr11 123134843 123135073 -25648399 - L1PA10 LINE L1 -9 6159 5928 3952 72 0 6 chr11 123135261 123135771 -25647701 - L1PA10 LINE L1 -219 5949 5443 184 214 24 0 chr11 123136354 123136396 -25647076 - MIR SINE MIR -74 134 92 1373 207 52 60 chr11 123137763 123137925 -25645547 + MLT1E LTR MaLR 14 176 -417 4145 130 51 10 chr11 123137925 123138128 -25645344 + L1MA4 LINE L1 5579 5772 -528 490 15 30 0 chr11 123138128 123138195 -25645277 + (TA)n Simple_repeat Simple_repeat 1 69 0 4145 130 51 10 chr11 123138195 123138674 -25644798 + L1MA4 LINE L1 5772 6289 -11 1373 207 52 60 chr11 123138674 123139042 -25644430 + MLT1E LTR MaLR 176 593 0 412 303 133 74 chr11 123139091 123139995 -25643477 - L2 LINE L2 -2 3270 2304 2126 130 0 3 chr11 123140156 123140457 -25643015 + AluSg SINE Alu 5 304 -6 252 253 67 120 chr11 123141187 123141337 -25642135 + MIR3 SINE MIR 1 142 -66 541 247 168 70 chr11 123141441 123141956 -25641516 - MLT1H1 LTR MaLR 0 555 1 33 25 0 0 chr11 123142842 123142882 -25640590 + AT_rich Low_complexity Low_complexity 1 40 0 1635 178 61 42 chr11 123143062 123143473 -25639999 - L1MA9 LINE L1 -158 6154 5743 1604 186 58 3 chr11 123144253 123144544 -25638928 - L1MB5 LINE L1 -8 6166 5860 594 324 62 43 chr11 123144559 123144839 -25638633 - L2 LINE L2 -33 3280 3007 1859 159 24 10 chr11 123144839 123145134 -25638338 + AluJo SINE Alu 1 299 -13 594 324 62 43 chr11 123145134 123145385 -25638087 - L2 LINE L2 -306 3007 2681 383 328 15 0 chr11 123146675 123146806 -25636666 - MIR SINE MIR -13 249 117 3019 154 106 73 chr11 123146997 123147473 -25635999 + L1MC3 LINE L1 6566 7025 -760 228 268 49 12 chr11 123147473 123147555 -25635917 + MLT1F1 LTR MaLR 24 108 -459 3019 154 106 73 chr11 123147555 123148136 -25635336 + L1MC3 LINE L1 7025 7777 -8 2446 68 0 13 chr11 123148868 123149175 -25634297 + AluY SINE Alu 1 303 -8 188 283 38 19 chr11 123149282 123149335 -25634137 + L2 LINE L2 3240 3293 -20 397 215 47 28 chr11 123149929 123150036 -25633436 + MER103 DNA DNA 8 116 -50 2545 62 0 3 chr11 123150056 123150360 -25633112 - AluY SINE Alu -8 303 1 419 312 7 7 chr11 123150488 123150629 -25632843 + MIR SINE MIR 117 257 -5 211 192 0 58 chr11 123151171 123151223 -25632249 - L2 LINE L2 0 3313 3265 182 240 60 50 chr11 123151596 123151696 -25631776 - L2 LINE L2 -589 2725 2625 1416 87 0 0 chr11 123153571 123153755 -25629717 - AluY SINE Alu -8 303 120 390 113 0 0 chr11 123153855 123153917 -25629555 + L1MC4a LINE L1 5926 5987 -1821 706 195 130 10 chr11 123154086 123154286 -25629186 + L1MC4a LINE L1 6285 6508 -1300 744 243 16 16 chr11 123154286 123154475 -25628997 + L1MC4a LINE L1 6731 6919 -889 1921 155 0 0 chr11 123154500 123154791 -25628681 - AluJo SINE Alu -21 291 1 916 150 94 0 chr11 123154792 123154952 -25628520 - LTR51 LTR ERV1 -84 587 413 1044 248 4 4 chr11 123155054 123155292 -25628180 + MER58B DNA MER1_type 103 340 -1 200 229 229 0 chr11 123157157 123157240 -25626232 + MIR SINE MIR 97 198 -64 21 0 0 0 chr11 123157689 123157710 -25625762 + AT_rich Low_complexity Low_complexity 1 21 0 2375 195 179 60 chr11 123158078 123158816 -25624656 + LTR1B LTR ERV1 1 826 0 2103 141 0 0 chr11 123158997 123159287 -25624185 + AluSx SINE Alu 1 290 -22 2218 152 66 13 chr11 123159970 123160364 -25623108 - L1MB3 LINE L1 0 6183 5769 888 153 14 96 chr11 123161623 123161767 -25621705 + MER3 DNA MER1_type 1 124 -85 2191 117 0 0 chr11 123161767 123162066 -25621406 - AluSx SINE Alu -13 299 1 888 153 14 96 chr11 123162066 123162130 -25621342 + MER3 DNA MER1_type 124 192 -17 1854 140 3 14 chr11 123162219 123162504 -25620968 - AluJb SINE Alu -30 282 1 268 267 34 82 chr11 123162856 123163002 -25620470 + MIR SINE MIR 73 211 -51 407 304 148 0 chr11 123164182 123164317 -25619155 - L2 LINE L2 -2 3270 3116 2304 101 0 3 chr11 123164823 123165121 -25618351 - AluSx SINE Alu -15 297 1 1351 210 85 65 chr11 123165158 123165606 -25617866 - MLT1C LTR MaLR -3 464 8 351 298 50 8 chr11 123166377 123166511 -25616961 - MIR SINE MIR -45 163 22 183 80 0 0 chr11 123167591 123167616 -25615856 + (T)n Simple_repeat Simple_repeat 1 25 0 2086 124 30 0 chr11 123168664 123168963 -25614509 - AluSq SINE Alu 0 313 6 309 289 119 6 chr11 123170302 123170461 -25613011 - MIR SINE MIR -11 251 75 323 323 11 0 chr11 123170834 123170927 -25612545 - MER5A DNA MER1_type -87 102 9 606 243 88 0 chr11 123171281 123171429 -25612043 - MER96 DNA MER1_type? 0 175 15 378 253 63 0 chr11 123171449 123171544 -25611928 - MIR3 SINE MIR -19 189 89 600 194 32 86 chr11 123171559 123171745 -25611727 + MER104 DNA Tc2 2 177 -3 572 259 174 5 chr11 123171853 123172065 -25611407 + MIR SINE MIR 1 248 -14 187 275 80 94 chr11 123172812 123172950 -25610522 + L2 LINE L2 3159 3294 -19 2190 80 25 0 chr11 123176167 123176467 -25607005 + AluSg SINE Alu 1 307 0 747 198 24 0 chr11 123176603 123176729 -25606743 - FLAM_A SINE Alu -4 129 1 537 252 39 91 chr11 123177953 123178207 -25605265 - L2 LINE L2 0 3313 3073 268 246 14 63 chr11 123178295 123178437 -25605035 - MIR SINE MIR -66 142 15 573 276 104 0 chr11 123179278 123179470 -25604002 - MIR SINE MIR 0 262 51 667 242 48 30 chr11 123179529 123179694 -25603778 - MIR SINE MIR -51 211 44 186 133 0 0 chr11 123182447 123182477 -25600995 + (TG)n Simple_repeat Simple_repeat 1 30 0 481 247 108 24 chr11 123182795 123182961 -25600511 - MIR SINE MIR -71 191 12 * 578 352 24 14 chr11 123182914 123183127 -25600345 + MIR SINE MIR 31 245 -17 21 0 0 0 chr11 123183128 123183149 -25600323 + AT_rich Low_complexity Low_complexity 1 21 0 239 324 158 0 chr11 123183361 123183500 -25599972 - L2 LINE L2 -744 2570 2410 242 264 77 11 chr11 123183688 123183779 -25599693 + MIR3 SINE MIR 89 185 -23 212 327 145 33 chr11 123184114 123184328 -25599144 - MIR SINE MIR -5 257 20 200 238 0 0 chr11 123184412 123184454 -25599018 - L2 LINE L2 -8 3305 3264 473 284 64 77 chr11 123185247 123185363 -25598109 - L2 LINE L2 -35 3278 3162 1401 185 143 26 chr11 123185363 123185671 -25597801 + MER2 DNA MER2_type 1 344 0 473 284 64 77 chr11 123185671 123186076 -25597396 - L2 LINE L2 -151 3162 2190 825 267 29 9 chr11 123186153 123186363 -25597109 - MIR SINE MIR -39 223 10 2196 118 3 0 chr11 123186816 123187120 -25596352 - AluSg SINE Alu -5 305 1 2405 195 179 58 chr11 123187301 123188038 -25595434 - LTR1B LTR ERV1 0 826 1 21 0 0 0 chr11 123188406 123188427 -25595045 + AT_rich Low_complexity Low_complexity 1 21 0 200 229 229 0 chr11 123188876 123188959 -25594513 - MIR SINE MIR -64 198 97 1210 236 9 37 chr11 123190820 123191142 -25592330 - MER58B DNA MER1_type -1 340 28 204 223 10 0 chr11 123191323 123191384 -25592088 + G-rich Low_complexity Low_complexity 2 104 0 2416 160 59 20 chr11 123192570 123193063 -25590409 + L1MB7 LINE L1 5665 6176 -8 24 53 0 0 chr11 123193163 123193201 -25590271 + AT_rich Low_complexity Low_complexity 1 38 0 467 294 109 27 chr11 123194303 123194524 -25588948 + MIR SINE MIR 14 252 -10 2118 137 48 34 chr11 123194579 123194937 -25588535 - THE1B LTR MaLR -1 363 1 195 253 227 0 chr11 123195332 123195407 -25588065 + MIR SINE MIR 117 208 -54 1769 83 186 0 chr11 123195909 123196161 -25587311 - AluSg SINE Alu 0 300 2 2236 103 3 7 chr11 123196201 123196502 -25586970 + AluSx SINE Alu 1 300 -12 190 284 32 103 chr11 123196860 123197015 -25586457 - L2 LINE L2 -262 3051 2908 315 71 0 0 chr11 123197074 123197116 -25586356 + (CATA)n Simple_repeat Simple_repeat 3 44 0 466 300 31 0 chr11 123198109 123198239 -25585233 - MIR SINE MIR -70 192 59 236 202 29 67 chr11 123198424 123198528 -25584944 - L1ME4a LINE L1 0 6121 6022 * 1158 231 49 12 chr11 123198481 123198815 -25584657 + L1ME1 LINE L1 5822 6161 -5 2171 110 0 13 chr11 123200146 123200447 -25583025 + AluSx SINE Alu 1 297 -15 485 114 0 0 chr11 123203146 123203216 -25580256 - L1MB2 LINE L1 -2 6169 6100 204 380 71 9 chr11 123203433 123203546 -25579926 + L2 LINE L2 3142 3261 -11 218 384 0 16 chr11 123206333 123206458 -25577014 + GA-rich Low_complexity Low_complexity 4 126 0 565 172 41 69 chr11 123207932 123208147 -25575325 - MER39 LTR ERV1 -8 729 550 1794 137 66 1 chr11 123208161 123208514 -25574958 - LTR48B LTR ERV1 -250 394 1 2106 135 7 0 chr11 123208523 123208819 -25574653 - AluSx SINE Alu -14 298 1 189 0 0 0 chr11 123208836 123208857 -25574615 + (A)n Simple_repeat Simple_repeat 1 21 0 310 261 92 50 chr11 123209631 123209750 -25573722 + L2 LINE L2 3182 3305 -8 2243 112 3 3 chr11 123209801 123210105 -25573367 + AluSp SINE Alu 2 305 -8 2749 120 24 28 chr11 123210205 123210665 -25572807 + L1MA4A LINE L1 5845 6302 -1 1937 162 3 3 chr11 123213172 123213469 -25570003 + AluSx SINE Alu 1 297 -15 22 56 0 0 chr11 123213507 123213543 -25569929 + AT_rich Low_complexity Low_complexity 1 36 0 340 251 257 12 chr11 123213548 123213719 -25569753 - MIR SINE MIR -3 259 47 403 252 141 37 chr11 123214421 123214556 -25568916 + MER5A DNA MER1_type 13 161 -28 356 265 68 8 chr11 123215527 123215644 -25567828 + MIR SINE MIR 25 148 -60 396 59 0 0 chr11 123216205 123216256 -25567216 + (TG)n Simple_repeat Simple_repeat 1 51 0 575 279 87 44 chr11 123217588 123217817 -25565655 - L2 LINE L2 -1 3312 3074 328 261 99 21 chr11 123218866 123219008 -25564464 - MLT1J1 LTR MaLR -29 417 265 * 754 268 46 4 chr11 123219002 123219241 -25564231 - MLT1J2 LTR MaLR -201 249 1 423 0 0 0 chr11 123219903 123219950 -25563522 + (TG)n Simple_repeat Simple_repeat 2 48 0 2341 194 30 7 chr11 123221282 123221747 -25561725 - L1MB2 LINE L1 -11 6160 5685 763 171 0 0 chr11 123223336 123223453 -25560019 + FLAM_A SINE Alu 2 118 -15 217 330 28 9 chr11 123224274 123224383 -25559089 - L2 LINE L2 -2901 413 303 326 289 44 9 chr11 123226135 123226249 -25557223 - L3 LINE CR1 -2 1575 1458 195 303 25 67 chr11 123227335 123227454 -25556018 - L2 LINE L2 -13 3300 3187 221 289 53 13 chr11 123227536 123227612 -25555860 - L3 LINE CR1 -4 1573 1495 904 297 90 19 chr11 123227626 123228003 -25555469 - L3 LINE CR1 -431 1146 743 239 274 9 44 chr11 123228007 123228120 -25555352 - Charlie7 DNA MER1_type -6 2606 2498 * 1692 282 54 33 chr11 123228105 123228648 -25554824 - Charlie7 DNA MER1_type -1926 686 125 2138 97 0 60 chr11 123228648 123228967 -25554505 + AluSc SINE Alu 1 300 -9 1692 282 54 33 chr11 123228967 123229094 -25554378 - Charlie7 DNA MER1_type -2487 125 2 650 299 54 22 chr11 123229103 123229381 -25554091 - L3 LINE CR1 -848 729 443 349 303 133 33 chr11 123229397 123229608 -25553864 - MIR SINE MIR -5 257 26 386 235 135 92 chr11 123230143 123230543 -25552929 - L1MC4 LINE L1 0 8042 7626 357 252 36 65 chr11 123231376 123231515 -25551957 + MIR3 SINE MIR 68 202 -6 281 337 58 6 chr11 123231995 123232167 -25551305 + MIR SINE MIR 81 261 -1 258 105 0 0 chr11 123235659 123235697 -25547775 + (T)n Simple_repeat Simple_repeat 1 38 0 27 0 0 0 chr11 123237404 123237431 -25546041 + AT_rich Low_complexity Low_complexity 1 27 0 255 308 55 41 chr11 123237789 123237935 -25545537 - L2 LINE L2 -1 3312 3165 2251 106 0 0 chr11 123240346 123240639 -25542833 - AluSg SINE Alu -16 294 2 258 56 0 0 chr11 123240740 123240776 -25542696 + (GA)n Simple_repeat Simple_repeat 2 37 0 387 227 15 29 chr11 123241099 123241220 -25542252 + MIR SINE MIR 48 171 -37 340 200 133 0 chr11 123241242 123241332 -25542140 - L2 LINE L2 -2 3311 3210 312 360 38 15 chr11 123241469 123241730 -25541742 - L2 LINE L2 -1438 1876 1610 2238 112 30 0 chr11 123242535 123242838 -25540634 + AluSx SINE Alu 1 312 0 192 228 0 0 chr11 123243121 123243178 -25540294 + CT-rich Low_complexity Low_complexity 4 60 0 480 231 107 16 chr11 123244271 123244392 -25539080 - MER94 DNA DNA -2 132 1 261 0 0 0 chr11 123244436 123244465 -25539007 + (CA)n Simple_repeat Simple_repeat 2 30 0 3644 193 168 9 chr11 123244855 123245814 -25537658 - Charlie1 DNA MER1_type -15 2746 1636 1680 32 0 0 chr11 123247005 123247193 -25536279 - L1PA4 LINE L1 0 6155 5968 344 277 145 31 chr11 123250214 123250373 -25533099 + MER5B DNA MER1_type 2 178 0 3394 214 63 30 chr11 123251584 123252361 -25531111 - MER21B LTR ERV1 -60 803 1 2362 48 0 61 chr11 123253117 123253428 -25530044 - AluY SINE Alu -17 294 3 401 147 0 15 chr11 123253741 123253809 -25529663 + MIR SINE MIR 78 144 -118 31 0 0 0 chr11 123254825 123254856 -25528616 + AT_rich Low_complexity Low_complexity 1 31 0 184 0 30 61 chr11 123255574 123255607 -25527865 + (TTTTTG)n Simple_repeat Simple_repeat 2 33 0 408 20 0 0 chr11 123256336 123256385 -25527087 + (TG)n Simple_repeat Simple_repeat 2 50 0 1939 107 4 0 chr11 123256929 123257192 -25526280 - AluSx SINE Alu -14 298 35 614 249 43 38 chr11 123258377 123258562 -25524910 - MIR SINE MIR -29 233 48 2065 113 0 7 chr11 123258652 123258972 -25524500 + AluSx SINE Alu 3 320 0 1783 196 138 31 chr11 123259069 123259488 -25523984 + MLT1C LTR MaLR 4 467 0 324 0 0 0 chr11 123260892 123260928 -25522544 + (TA)n Simple_repeat Simple_repeat 2 37 0 205 261 118 65 chr11 123260951 123261099 -25522373 + MIR SINE MIR 20 169 -62 426 146 122 0 chr11 123263235 123263317 -25520155 + L1MA4 LINE L1 6200 6291 -9 222 37 0 0 chr11 123264732 123264759 -25518713 + (TTG)n Simple_repeat Simple_repeat 1 27 0 2070 95 7 4 chr11 123264759 123265033 -25518439 - AluSx SINE Alu -36 276 2 786 253 64 25 chr11 123266276 123266478 -25516994 - MER63A DNA MER1_type 0 210 1 399 231 100 31 chr11 123268020 123268150 -25515322 + MIR SINE MIR 6 144 -118 1888 106 11 7 chr11 123268724 123268998 -25514474 + L1PA11 LINE L1 5899 6173 -1 363 335 21 63 chr11 123270329 123270520 -25512952 - MIR3 SINE MIR -23 185 3 339 102 0 0 chr11 123272251 123272300 -25511172 - MLT2B1 LTR ERVL 0 520 472 212 185 19 0 chr11 123272326 123272380 -25511092 + (TA)n Simple_repeat Simple_repeat 2 56 0 315 0 0 0 chr11 123272380 123272415 -25511057 + (GA)n Simple_repeat Simple_repeat 2 36 0 1817 219 84 26 chr11 123272415 123272845 -25510627 - MLT2B1 LTR ERVL -65 455 1 303 320 23 16 chr11 123273111 123273239 -25510233 - MER5A DNA MER1_type -21 168 40 200 226 113 16 chr11 123273348 123273410 -25510062 - L2 LINE L2 -9 3304 3237 1888 141 72 16 chr11 123273435 123273754 -25509718 + MER1B DNA MER1_type 1 337 0 375 41 0 0 chr11 123274842 123274891 -25508581 + (TG)n Simple_repeat Simple_repeat 2 50 0 303 136 0 0 chr11 123276113 123276172 -25507300 + (TG)n Simple_repeat Simple_repeat 1 59 0 2369 114 0 0 chr11 123276470 123276778 -25506694 + AluSg SINE Alu 1 308 -2 806 224 6 6 chr11 123278794 123278968 -25504504 + MIR SINE MIR 18 191 -71 259 273 71 0 chr11 123278994 123279093 -25504379 - L1MC4 LINE L1 -1323 6719 6614 * 283 273 23 0 chr11 123279007 123279095 -25504377 + L1MC4 LINE L1 6614 6703 -1339 269 203 72 14 chr11 123280092 123280161 -25503311 + MIR3 SINE MIR 124 196 -12 1698 140 45 39 chr11 123280661 123281019 -25502453 + AluSq SINE Alu 3 362 0 245 155 17 0 chr11 123282727 123282785 -25500687 + (CA)n Simple_repeat Simple_repeat 1 59 0 2553 61 0 13 chr11 123282796 123283106 -25500366 - AluY SINE Alu -5 306 1 252 0 0 0 chr11 123283211 123283239 -25500233 + (TG)n Simple_repeat Simple_repeat 2 29 0 333 328 69 26 chr11 123283300 123283489 -25499983 - MIR SINE MIR -52 210 14 212 186 93 0 chr11 123283542 123283585 -25499887 - MIR SINE MIR -67 141 95 809 206 140 13 chr11 123283831 123284059 -25499413 - MIR SINE MIR 0 262 6 2367 132 8 16 chr11 123284166 123284544 -25498928 - THE1C LTR MaLR 0 375 1 1995 82 112 4 chr11 123285674 123285941 -25497531 - AluSg SINE Alu -14 296 1 375 361 39 0 chr11 123286075 123286205 -25497267 + MIR SINE MIR 20 154 -108 1621 51 0 0 chr11 123286901 123287097 -25496375 + L1PA3 LINE L1 5960 6155 0 180 0 0 0 chr11 123287130 123287150 -25496322 + (A)n Simple_repeat Simple_repeat 1 20 0 460 240 138 6 chr11 123287813 123287982 -25495490 + MIR3 SINE MIR 2 189 -19 275 24 71 0 chr11 123289632 123289674 -25493798 + T-rich Low_complexity Low_complexity 2 46 0 186 277 0 0 chr11 123291260 123291307 -25492165 + L2 LINE L2 3255 3301 -12 23 0 0 0 chr11 123293639 123293662 -25489810 + AT_rich Low_complexity Low_complexity 1 23 0 1044 308 38 44 chr11 123295342 123296173 -25487299 + L2 LINE L2 2476 3292 -21 205 240 160 0 chr11 123297191 123297266 -25486206 - L2 LINE L2 -268 3004 2918 278 246 0 0 chr11 123297281 123297346 -25486126 + L2 LINE L2 3194 3258 -55 562 244 19 12 chr11 123297505 123297665 -25485807 - MIR SINE MIR 0 262 102 435 19 0 0 chr11 123298071 123298123 -25485349 + (CA)n Simple_repeat Simple_repeat 1 52 0 479 167 105 35 chr11 123299374 123299488 -25483984 - MER94 DNA DNA 0 134 13 21 0 0 0 chr11 123299942 123299963 -25483509 + AT_rich Low_complexity Low_complexity 1 21 0 219 183 14 42 chr11 123299992 123300063 -25483409 + T-rich Low_complexity Low_complexity 2 70 0 204 369 28 43 chr11 123300822 123301077 -25482395 + L2 LINE L2 2397 2647 -667 2625 16 7 13 chr11 123303447 123303752 -25479720 - AluY SINE Alu -8 303 1 184 270 126 27 chr11 123304420 123304531 -25478941 - L3 LINE CR1 -1 1576 1455 1003 286 101 9 chr11 123304673 123305099 -25478373 - L3 LINE CR1 -340 1237 773 367 264 64 24 chr11 123305107 123305232 -25478240 - MER20B DNA MER1_type -592 191 62 397 220 119 34 chr11 123305455 123305573 -25477899 - L3 LINE CR1 -837 740 613 2488 65 3 10 chr11 123307903 123308209 -25475263 - AluY SINE Alu -7 304 1 43984 49 2 1 chr11 123311248 123317395 -25466077 + L1PA5 LINE L1 2 6153 -1 180 0 0 0 chr11 123318579 123318599 -25464873 + (CTG)n Simple_repeat Simple_repeat 3 22 0 2902 117 57 15 chr11 123321593 123322071 -25461401 - L1MB3 LINE L1 -9 6174 5677 855 185 46 31 chr11 123322099 123322294 -25461178 - L1M3 LINE L1 -436 5747 5550 400 215 42 39 chr11 123325158 123325261 -25458211 + L1MC4 LINE L1 6559 6702 -1139 35 54 0 0 chr11 123325312 123325368 -25458104 + AT_rich Low_complexity Low_complexity 1 56 0 1092 8 0 0 chr11 123326800 123326920 -25456552 - AluYa5/8 SINE Alu -5 306 187 228 272 33 65 chr11 123328680 123328772 -25454700 + MIR SINE MIR 77 165 -97 488 298 42 47 chr11 123329295 123329510 -25453962 + MIR SINE MIR 22 235 -27 1928 154 35 0 chr11 123329639 123329925 -25453547 + AluSx SINE Alu 1 296 -16 375 23 0 0 chr11 123331945 123331989 -25451483 + (TG)n Simple_repeat Simple_repeat 1 44 0 1637 166 58 4 chr11 123332474 123332752 -25450720 + AluJb SINE Alu 1 293 -19 2223 111 7 10 chr11 123338095 123338402 -25445070 - AluSx SINE Alu -6 306 1 1975 157 27 0 chr11 123339433 123339726 -25443746 + AluJo SINE Alu 1 301 -11 345 313 0 0 chr11 123339819 123339902 -25443570 + L2 LINE L2 3186 3268 -4 1804 165 0 48 chr11 123339937 123340252 -25443220 - AluSx SINE Alu -12 300 1 23 0 0 0 chr11 123340252 123340275 -25443197 + AT_rich Low_complexity Low_complexity 1 23 0 258 295 0 0 chr11 123340765 123340826 -25442646 - MIR3 SINE MIR -22 186 126 711 184 0 0 chr11 123341155 123341269 -25442203 + MER81 DNA DNA 1 114 0 188 130 43 65 chr11 123341723 123341769 -25441703 - MER5A DNA MER1_type -6 183 139 180 0 0 0 chr11 123342899 123342919 -25440553 + (A)n Simple_repeat Simple_repeat 1 20 0 477 268 119 10 chr11 123343661 123343855 -25439617 - MIR SINE MIR -27 235 21 598 298 112 5 chr11 123344573 123344804 -25438668 + MIR SINE MIR 9 261 -1 26 50 0 0 chr11 123345011 123345051 -25438421 + AT_rich Low_complexity Low_complexity 1 40 0 1272 215 23 7 chr11 123345789 123346091 -25437381 + L1MA4 LINE L1 5988 6294 -6 407 299 87 33 chr11 123346157 123346341 -25437131 + MIR SINE MIR 55 248 -14 2845 13 0 0 chr11 123346346 123346652 -25436820 - AluYa5 SINE Alu -5 306 1 2331 97 0 3 chr11 123347002 123347302 -25436170 - AluSx SINE Alu -9 303 5 220 355 0 0 chr11 123349961 123350037 -25433435 + CT-rich Low_complexity Low_complexity 5 80 0 357 281 34 35 chr11 123353861 123354008 -25429464 - MER5A DNA MER1_type -18 171 8 825 286 156 32 chr11 123354183 123354529 -25428943 - L3 LINE CR1 -2 1575 1187 722 294 160 18 chr11 123354514 123355010 -25428462 - L2 LINE L2 0 3313 2745 * 284 246 0 0 chr11 123357878 123357935 -25425537 + MER5A DNA MER1_type 54 110 -79 486 222 24 48 chr11 123358070 123358196 -25425276 - L2 LINE L2 0 3313 3191 2408 96 0 0 chr11 123358399 123358701 -25424771 + AluSx SINE Alu 11 312 0 594 257 67 17 chr11 123358755 123358934 -25424538 - MIR SINE MIR -18 244 57 210 172 0 69 chr11 123359217 123359275 -25424197 + C-rich Low_complexity Low_complexity 2 55 0 508 239 123 0 chr11 123362298 123362453 -25421019 + MER5B DNA MER1_type 1 174 -4 318 115 0 0 chr11 123362760 123362812 -25420660 + (CA)n Simple_repeat Simple_repeat 1 52 0 196 26 26 53 chr11 123363353 123363391 -25420081 + (TTTC)n Simple_repeat Simple_repeat 4 40 0 219 36 0 0 chr11 123364395 123364423 -25419049 + (ATG)n Simple_repeat Simple_repeat 1 28 0 243 0 0 0 chr11 123365151 123365178 -25418294 + (A)n Simple_repeat Simple_repeat 1 27 0 339 359 48 28 chr11 123365935 123366159 -25417313 + MIR SINE MIR 19 245 -17 515 245 82 27 chr11 123366514 123366661 -25416811 - MER96 DNA MER1_type? -1 174 20 308 185 192 77 chr11 123366854 123366984 -25416488 - L2 LINE L2 -4 3309 3165 818 295 121 21 chr11 123367002 123367266 -25416206 + MLT1I LTR MaLR 33 340 -69 3546 183 50 76 chr11 123367266 123368221 -25415251 + MER63C DNA MER1_type 1 930 0 818 295 121 21 chr11 123368221 123368295 -25415177 + MLT1I LTR MaLR 340 405 -4 1955 260 56 39 chr11 123368340 123369265 -25414207 - L2 LINE L2 -227 3086 2128 854 334 107 33 chr11 123370811 123372053 -25411419 + L2 LINE L2 230 1563 -1751 515 243 213 44 chr11 123372083 123372355 -25411117 - L2 LINE L2 -2 3311 2994 357 328 8 0 chr11 123373119 123373253 -25410219 + L2 LINE L2 3136 3270 -2 186 221 15 88 chr11 123374482 123374550 -25408922 + L3 LINE CR1 399 461 -1116 289 228 25 95 chr11 123374635 123374793 -25408679 + L3 LINE CR1 797 943 -634 755 223 33 0 chr11 123374876 123375060 -25408412 - MIR SINE MIR -28 234 45 291 281 9 117 chr11 123375185 123375416 -25408056 + L3 LINE CR1 1121 1326 -251 417 259 28 28 chr11 123375937 123376045 -25407427 - L2 LINE L2 -15 3257 3150 333 307 15 15 chr11 123376043 123376180 -25407292 + MIR SINE MIR 8 144 -118 * 471 305 69 69 chr11 123376250 123376804 -25406668 - LTR67 LTR ERVL -2 555 2 184 250 197 0 chr11 123377326 123377402 -25406070 - MIR SINE MIR -6 256 166 624 223 230 29 chr11 123377492 123377770 -25405702 + MLT1K LTR MaLR 253 586 -2 200 294 73 55 chr11 123377871 123377902 -25405570 - L2 LINE L2 -19 3294 3265 1540 183 102 6 chr11 123377902 123378235 -25405237 + MLT1A1 LTR MaLR 1 365 0 200 294 73 55 chr11 123378235 123378312 -25405160 - L2 LINE L2 -48 3265 3184 694 327 104 13 chr11 123378449 123378767 -25404705 + MLT2E LTR ERVL 34 380 -248 296 325 52 21 chr11 123378778 123378969 -25404503 - L2 LINE L2 -720 2594 2398 2352 221 158 70 chr11 123379145 123379288 -25404184 - L1MC4 LINE L1 -137 7905 7776 2324 58 7 17 chr11 123379288 123379580 -25403892 + AluY SINE Alu 1 289 -22 2352 221 158 70 chr11 123379580 123380443 -25403029 - L1MC4 LINE L1 -266 7776 6810 2120 186 27 62 chr11 123381931 123382446 -25401026 - L1MD3 LINE L1 -8 7987 7491 460 236 20 10 chr11 123382459 123382557 -25400915 - MLT1F1 LTR MaLR -442 125 35 584 193 55 79 chr11 123382612 123382755 -25400717 - Charlie4a DNA MER1_type -1491 470 332 3623 138 28 34 chr11 123382755 123383371 -25400101 + LTR9 LTR ERV1 1 612 0 584 193 55 79 chr11 123383371 123383429 -25400043 - Charlie4a DNA MER1_type -1629 332 274 263 146 62 0 chr11 123383481 123383529 -25399943 - Charlie4a DNA MER1_type -333 175 125 16862 162 35 13 chr11 123383538 123385449 -25398023 + L1PB1 LINE L1 114 1980 -4887 2230 119 0 7 chr11 123385449 123385752 -25397720 + AluSx SINE Alu 5 305 -7 16862 162 35 13 chr11 123385752 123389287 -25394185 + L1PB1 LINE L1 1980 5434 -1433 2355 103 0 0 chr11 123389287 123389588 -25393884 + AluSc SINE Alu 1 301 -8 16862 162 35 13 chr11 123389588 123390369 -25393103 + L1PB1 LINE L1 5434 6196 -671 189 0 0 0 chr11 123390369 123390390 -25393082 + (TA)n Simple_repeat Simple_repeat 2 22 0 16862 162 35 13 chr11 123390390 123390574 -25392898 + L1PB1 LINE L1 6196 6374 -493 2031 131 3 7 chr11 123390574 123390871 -25392601 + AluSx SINE Alu 1 296 -16 16862 162 35 13 chr11 123390871 123391059 -25392413 + L1PB1 LINE L1 6374 6866 -1 484 210 10 0 chr11 123391098 123391198 -25392274 - Charlie4a DNA MER1_type -390 118 18 492 288 48 46 chr11 123391472 123391823 -25391649 + L1ME4a LINE L1 5471 5822 -299 320 313 56 6 chr11 123391871 123392031 -25391441 + MIR SINE MIR 94 261 -1 272 229 131 8 chr11 123392106 123392228 -25391244 + L1ME4a LINE L1 5959 6095 -26 654 95 0 0 chr11 123392426 123392521 -25390951 + (TTTCC)n Simple_repeat Simple_repeat 1 95 0 564 116 0 0 chr11 123392541 123392627 -25390845 + (TCCC)n Simple_repeat Simple_repeat 1 86 0 1517 179 47 18 chr11 123392627 123392901 -25390571 - AluJo SINE Alu -30 282 1 203 306 0 0 chr11 123393063 123393125 -25390347 + L2 LINE L2 3211 3272 0 443 285 95 0 chr11 123393626 123393784 -25389688 + MIR SINE MIR 89 261 -1 1760 124 81 7 chr11 123394255 123394538 -25388934 - AluSx SINE Alu -8 304 1 199 276 46 35 chr11 123394705 123394792 -25388680 + L3b LINE CR1 1285 1372 -211 801 230 170 11 chr11 123395025 123395295 -25388177 - MLT1I LTR MaLR -1 408 96 272 211 168 11 chr11 123395575 123395670 -25387802 - L2 LINE L2 0 3313 3204 304 337 103 40 chr11 123395996 123396248 -25387224 + L2 LINE L2 2918 3185 -87 548 199 152 101 chr11 123396302 123396374 -25387098 + Charlie2 DNA MER1_type 2438 2505 -357 2106 129 0 32 chr11 123396374 123396683 -25386789 + AluSx SINE Alu 1 299 -13 548 199 152 101 chr11 123396683 123396887 -25386585 + Charlie2 DNA MER1_type 2505 2728 -134 1415 218 129 73 chr11 123397032 123397514 -25385958 - MLT1J LTR MaLR -2 509 1 510 302 222 22 chr11 123397514 123398129 -25385343 + L2 LINE L2 2305 3049 -223 746 254 5 10 chr11 123398480 123398677 -25384795 - MIR SINE MIR 0 262 67 1411 149 24 49 chr11 123398687 123398975 -25384497 - LTR26 LTR ERV1 -4 599 319 2018 131 36 0 chr11 123399049 123399355 -25384117 - LTR26 LTR ERV1 -286 317 1 203 258 16 16 chr11 123399386 123399448 -25384024 + L2 LINE L2 3245 3306 -7 * 295 194 30 0 chr11 123399447 123399514 -25383958 - MIR SINE MIR -181 81 13 4531 117 8 45 chr11 123400654 123401371 -25382101 + LTR8 LTR ERV1 1 691 0 316 202 60 48 chr11 123401385 123401469 -25382003 - MIR SINE MIR -89 173 89 358 250 0 42 chr11 123401756 123401876 -25381596 + C-rich Low_complexity Low_complexity 4 118 0 306 295 11 0 chr11 123402581 123402676 -25380796 - MIR SINE MIR -107 155 60 260 306 75 46 chr11 123402752 123402925 -25380547 - MER5A DNA MER1_type -11 178 1 182 254 56 28 chr11 123404192 123404263 -25379209 - L2 LINE L2 -92 3221 3149 695 139 19 9 chr11 123405162 123405270 -25378202 + MER3 DNA MER1_type 1 109 -100 227 88 0 0 chr11 123405346 123405380 -25378092 + MER3 DNA MER1_type 147 180 -29 451 348 68 55 chr11 123405392 123405581 -25377891 - L2 LINE L2 -17 3255 3070 1870 170 98 8 chr11 123405581 123405939 -25377533 - MLT1B LTR MaLR 0 390 1 451 348 68 55 chr11 123405939 123406148 -25377324 - L2 LINE L2 -202 3070 2852 337 235 49 12 chr11 123406262 123406343 -25377129 + MLT1F1 LTR MaLR 42 125 -442 1725 202 63 19 chr11 123406343 123406753 -25376719 + L1MC3 LINE L1 7189 7616 -169 721 277 54 22 chr11 123406758 123407126 -25376346 + L1ME LINE L1 4465 4844 -1302 3479 175 57 18 chr11 123407450 123408188 -25375284 + LTR1B LTR ERV1 1 785 0 781 173 16 0 chr11 123408200 123408327 -25375145 + FLAM_A SINE Alu 2 130 -3 609 268 66 25 chr11 123408334 123408665 -25374807 + L1M2 LINE L1 5270 5566 -746 260 229 107 33 chr11 123408637 123408759 -25374713 + L1ME LINE L1 5667 5797 -367 * 935 241 145 29 chr11 123408899 123409341 -25374131 + MLT1H LTR MaLR 3 549 0 481 304 178 35 chr11 123409628 123410178 -25373294 - L2 LINE L2 -1707 1607 979 276 347 42 36 chr11 123410178 123410345 -25373127 + L2 LINE L2 3103 3270 -2 21 71 0 0 chr11 123410868 123410910 -25372562 + AT_rich Low_complexity Low_complexity 1 42 0 226 233 0 0 chr11 123411774 123411817 -25371655 + (TG)n Simple_repeat Simple_repeat 1 43 0 505 227 116 71 chr11 123413030 123413228 -25370244 + MER63A DNA MER1_type 4 210 0 3444 154 26 21 chr11 123415914 123416568 -25366904 - L1MB8 LINE L1 -5 6173 5517 1250 259 155 0 chr11 123416690 123417110 -25366362 + LTR33 LTR ERVL 37 521 0 217 218 256 0 chr11 123417386 123417464 -25366008 + MIR SINE MIR 117 214 -48 271 294 0 24 chr11 123418722 123418807 -25364665 - MIR SINE MIR -104 158 76 350 335 37 27 chr11 123419807 123420183 -25363289 + L2 LINE L2 2065 2444 -870 644 281 67 0 chr11 123420808 123421011 -25362461 + MIR SINE MIR 34 247 -15 215 258 15 0 chr11 123421106 123421172 -25362300 + (TTA)n Simple_repeat Simple_repeat 1 67 0 509 273 67 26 chr11 123421260 123421454 -25362018 - MIR SINE MIR -48 214 13 205 315 0 0 chr11 123421485 123421539 -25361933 + L2 LINE L2 3216 3269 -3 695 234 36 0 chr11 123421821 123421988 -25361484 - MER5B DNA MER1_type 0 178 6 348 333 19 0 chr11 123422472 123422577 -25360895 - L3 LINE CR1 -10 1567 1461 4597 187 36 14 chr11 123422707 123424304 -25359168 - L1MB8 LINE L1 -6 6172 4499 1271 253 72 53 chr11 123424472 123425225 -25358247 - L2 LINE L2 0 3313 2477 261 0 0 0 chr11 123425372 123425401 -25358071 + (TTG)n Simple_repeat Simple_repeat 2 30 0 252 264 36 36 chr11 123426968 123427135 -25356337 + (CA)n Simple_repeat Simple_repeat 1 167 0 2249 109 0 0 chr11 123428250 123428544 -25354928 + AluSx SINE Alu 1 294 -18 492 240 163 0 chr11 123431268 123431464 -25352008 - MIR SINE MIR -33 229 2 304 240 19 19 chr11 123432306 123432410 -25351062 + (TTTA)n Simple_repeat Simple_repeat 2 105 0 338 182 39 0 chr11 123432418 123432495 -25350977 - MER116 DNA Mariner 0 80 1 341 271 163 40 chr11 123434793 123435044 -25348428 - L3 LINE CR1 -138 1439 1158 320 315 93 9 chr11 123435158 123435374 -25348098 + L2 LINE L2 1926 2159 -1155 262 311 34 40 chr11 123436291 123436439 -25347033 + L2 LINE L2 3125 3271 -1 208 338 0 29 chr11 123436627 123436695 -25346777 + L2 LINE L2 3207 3272 0 914 289 98 15 chr11 123436696 123437156 -25346316 - L3 LINE CR1 -544 1033 536 248 208 19 0 chr11 123437761 123437814 -25345658 + L2 LINE L2 3214 3267 -5 192 40 0 0 chr11 123437919 123437944 -25345528 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 341 323 15 0 chr11 123439052 123439182 -25344290 - MIR3 SINE MIR -31 177 46 20658 184 33 11 chr11 123439721 123446354 -25337118 - L1PA13 LINE L1 0 6814 1 254 28 0 28 chr11 123447348 123447384 -25336088 + (TTTTG)n Simple_repeat Simple_repeat 4 38 0 249 249 227 30 chr11 123449058 123449388 -25334084 + HAL1 LINE L1 831 1225 -1282 307 302 15 15 chr11 123452622 123452744 -25330728 + CT-rich Low_complexity Low_complexity 2 202 0 322 203 0 0 chr11 123453095 123453164 -25330308 + MIR3 SINE MIR 118 186 -22 334 246 54 39 chr11 123454572 123454702 -25328770 + MIR SINE MIR 60 191 -71 611 75 0 0 chr11 123456105 123456185 -25327287 - MADE1 DNA Mariner 0 80 1 1784 159 22 0 chr11 123456420 123456723 -25326749 - AluSx SINE Alu 0 309 1 364 308 83 0 chr11 123456796 123456929 -25326543 - MIR SINE MIR -76 186 43 372 291 91 12 chr11 123456965 123457130 -25326342 + MIR SINE MIR 73 250 -12 201 147 0 0 chr11 123458250 123458284 -25325188 + (CA)n Simple_repeat Simple_repeat 2 35 0 204 222 22 0 chr11 123458419 123458464 -25325008 - MIR3 SINE MIR -11 197 152 1228 205 107 22 chr11 123458468 123458785 -25324687 + MER2 DNA MER2_type 1 344 0 312 186 0 17 chr11 123458847 123458906 -25324566 - MIR3 SINE MIR -50 158 101 424 277 66 30 chr11 123459075 123459241 -25324231 + MIR SINE MIR 79 250 -12 212 320 62 0 chr11 123459589 123459686 -25323786 + L2 LINE L2 2606 2708 -606 411 235 0 0 chr11 123460391 123460472 -25323000 - MIR SINE MIR -95 167 87 344 221 53 0 chr11 123461103 123461198 -25322274 - MIR SINE MIR -71 191 92 324 207 0 0 chr11 123461674 123461732 -25321740 - L2 LINE L2 0 3313 3256 1261 264 71 35 chr11 123462743 123463251 -25320221 + MLT1K LTR MaLR 62 587 -1 255 226 90 68 chr11 123463566 123463699 -25319773 + MER65B LTR ERV1 245 380 -151 472 247 78 7 chr11 123463966 123464120 -25319352 + L2 LINE L2 3147 3311 -2 316 313 64 47 chr11 123464272 123464505 -25318967 - L2 LINE L2 -20 3252 3016 409 283 142 38 chr11 123465648 123465860 -25317612 + MIR SINE MIR 17 250 -12 456 19 0 0 chr11 123466207 123466260 -25317212 + (TTCA)n Simple_repeat Simple_repeat 4 56 0 5416 115 31 24 chr11 123466432 123467300 -25316172 - L1PA16 LINE L1 0 6166 5293 4988 124 52 18 chr11 123467290 123468078 -25315394 - L1PB1 LINE L1 -1 6150 5331 * 2300 111 3 0 chr11 123468078 123468375 -25315097 - AluSg SINE Alu -12 298 1 4988 124 52 18 chr11 123468375 123468406 -25315066 - L1PB1 LINE L1 -820 5331 5303 2606 175 31 30 chr11 123468404 123468980 -25314492 + L1PB1 LINE L1 4710 5286 -860 * 638 108 0 10 chr11 123469054 123469156 -25314316 + (GGAA)n Simple_repeat Simple_repeat 4 104 0 354 183 0 0 chr11 123470122 123470193 -25313279 + GA-rich Low_complexity Low_complexity 1 71 0 4697 196 71 17 chr11 123470208 123471565 -25311907 - L1MD2 LINE L1 -10 6349 4928 197 113 32 32 chr11 123471694 123471756 -25311716 + (TTATA)n Simple_repeat Simple_repeat 3 64 0 412 297 55 61 chr11 123471783 123471944 -25311528 - MIR SINE MIR -66 142 30 507 260 94 67 chr11 123473647 123473872 -25309600 + MIR SINE MIR 34 262 0 204 40 0 0 chr11 123475604 123475629 -25307843 + (A)n Simple_repeat Simple_repeat 1 25 0 252 263 0 0 chr11 123475750 123475826 -25307646 + HAL1 LINE L1 2317 2392 -115 29 0 0 0 chr11 123476132 123476161 -25307311 + AT_rich Low_complexity Low_complexity 1 29 0 361 349 6 24 chr11 123476430 123476596 -25306876 + MIR3 SINE MIR 22 184 -24 350 348 72 0 chr11 123476850 123476988 -25306484 - L3 LINE CR1 -736 841 694 270 267 83 25 chr11 123477075 123477195 -25306277 + L1M3a LINE L1 354 480 -5823 793 341 3 7 chr11 123477252 123477551 -25305921 + L1M3a LINE L1 489 786 -5517 549 329 56 32 chr11 123477706 123478117 -25305355 + L1M3a LINE L1 660 1080 -5223 13832 195 45 35 chr11 123478366 123479069 -25304403 + L1MA9 LINE L1 777 1471 -5077 1941 169 3 0 chr11 123479069 123479365 -25304107 + AluSx SINE Alu 1 297 -15 13832 195 45 35 chr11 123479365 123484342 -25299130 + L1MA9 LINE L1 1471 6503 -45 233 356 166 41 chr11 123484517 123484812 -25298660 - L3 LINE CR1 -1210 367 36 981 64 7 14 chr11 123487359 123487500 -25295972 + L1PB2 LINE L1 6012 6151 0 2431 143 50 18 chr11 123487574 123488070 -25295402 - L1MB7 LINE L1 -323 5861 5350 517 200 30 0 chr11 123488056 123488191 -25295281 - L1MB7 LINE L1 -2115 4031 3893 * 1638 135 160 28 chr11 123488326 123488763 -25294709 + LTR54B LTR ERV1 2 496 -2 23 0 0 0 chr11 123490672 123490695 -25292777 + AT_rich Low_complexity Low_complexity 1 23 0 325 105 18 18 chr11 123490722 123490779 -25292693 - U7 snRNA snRNA -5 58 2 31 58 0 0 chr11 123491716 123491768 -25291704 + AT_rich Low_complexity Low_complexity 1 52 0 309 51 0 0 chr11 123493283 123493322 -25290150 + (CA)n Simple_repeat Simple_repeat 2 40 0 538 273 133 51 chr11 123493369 123493934 -25289538 + HAL1 LINE L1 421 1031 -1476 564 253 156 5 chr11 123494431 123494617 -25288855 - MIR SINE MIR -24 238 25 551 204 102 0 chr11 123496473 123496581 -25286891 + FLAM_A SINE Alu 4 122 -11 248 256 174 8 chr11 123496789 123496862 -25286610 + MER112 DNA MER1_type 1 61 -199 339 44 0 0 chr11 123496862 123496907 -25286565 + (GA)n Simple_repeat Simple_repeat 2 46 0 248 256 174 8 chr11 123496907 123496954 -25286518 + MER112 DNA MER1_type 61 141 -119 240 214 0 0 chr11 123496966 123497022 -25286450 + CT-rich Low_complexity Low_complexity 2 57 0 326 359 3 29 chr11 123497491 123497629 -25285843 - MIR SINE MIR -76 132 20 21 0 0 0 chr11 123497926 123497947 -25285525 + AT_rich Low_complexity Low_complexity 1 21 0 330 248 86 0 chr11 123498483 123498588 -25284884 - MIR SINE MIR -54 208 95 180 175 318 0 chr11 123498774 123498837 -25284635 + MIR SINE MIR 47 129 -79 200 303 203 53 chr11 123498879 123499259 -25284213 + L2 LINE L2 2836 3272 0 483 298 99 0 chr11 123499482 123499603 -25283869 + L2 LINE L2 3134 3266 -6 451 217 0 28 chr11 123500098 123500204 -25283268 + MER69 DNA AcHobo 39 141 -2385 393 162 40 0 chr11 123500208 123500282 -25283190 + MER69 DNA AcHobo 2450 2526 0 498 345 0 12 chr11 123500554 123500719 -25282753 - MIR SINE MIR -87 175 13 2149 121 3 13 chr11 123504025 123504331 -25279141 - AluSq SINE Alu -10 303 1 449 224 0 95 chr11 123504389 123504537 -25278935 + MIR SINE MIR 32 164 -63 374 273 25 130 chr11 123504568 123504806 -25278666 + MIR SINE MIR 47 259 -3 254 341 167 8 chr11 123504946 123505072 -25278400 - L2 LINE L2 -8 3264 3119 484 257 148 16 chr11 123505413 123505596 -25277876 - MER63A DNA MER1_type 0 210 4 596 131 0 0 chr11 123505645 123505729 -25277743 + AluSg/x SINE Alu 197 280 -32 420 289 78 8 chr11 123505743 123505871 -25277601 - MIR SINE MIR -106 156 20 829 135 28 0 chr11 123506032 123506173 -25277299 + L1MB2 LINE L1 5687 5831 -337 * 4995 184 33 11 chr11 123506171 123506446 -25277026 + L1MA7 LINE L1 4800 5068 -1223 2127 100 3 50 chr11 123506446 123506765 -25276707 + AluSg SINE Alu 1 304 -6 4995 184 33 11 chr11 123506765 123507944 -25275528 + L1MA7 LINE L1 5068 6291 0 1790 179 26 6 chr11 123507953 123508304 -25275168 + L1MB2 LINE L1 5814 6171 0 192 289 193 0 chr11 123508520 123508603 -25274869 + MIR SINE MIR 35 133 -129 201 74 0 0 chr11 123510025 123510052 -25273420 + (TG)n Simple_repeat Simple_repeat 2 28 0 500 304 33 27 chr11 123510391 123510575 -25272897 + MIR SINE MIR 23 207 -55 432 234 131 22 chr11 123510760 123510897 -25272575 - MIR3 SINE MIR -20 188 37 1819 149 38 3 chr11 123510954 123511297 -25272175 + L1MA4 LINE L1 5927 6281 -19 379 276 102 8 chr11 123512968 123513095 -25270377 + MIR3 SINE MIR 22 160 -48 215 238 0 0 chr11 123513095 123513137 -25270335 + L2 LINE L2 3226 3267 -5 685 224 94 36 chr11 123513672 123513980 -25269492 + MLT1C LTR MaLR 22 347 -120 237 203 34 17 chr11 123514202 123514261 -25269211 - L2 LINE L2 -1 3312 3253 230 292 118 42 chr11 123514760 123514904 -25268568 + MIR3 SINE MIR 39 193 -15 467 334 57 74 chr11 123515052 123515405 -25268067 - L2 LINE L2 -31 3241 2895 397 346 155 22 chr11 123515711 123516252 -25267220 + L2 LINE L2 469 1081 -2233 555 306 59 70 chr11 123516262 123516491 -25266981 + L2 LINE L2 2456 2686 -628 1797 148 46 0 chr11 123516491 123516774 -25266698 - AluSx SINE Alu -16 296 1 555 306 59 70 chr11 123516774 123516791 -25266681 + L2 LINE L2 2686 2702 -612 306 0 0 0 chr11 123516791 123516825 -25266647 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 555 306 59 70 chr11 123516825 123517021 -25266451 + L2 LINE L2 2702 2894 -420 219 193 106 26 chr11 123517065 123517148 -25266324 + MIR SINE MIR 33 119 -112 649 318 36 24 chr11 123517284 123517536 -25265936 - MIR SINE MIR 0 262 8 320 267 114 46 chr11 123518130 123518261 -25265211 - L2 LINE L2 -6 3307 3168 780 312 44 0 chr11 123519436 123519686 -25263786 - MIR SINE MIR -1 261 1 223 299 46 35 chr11 123519779 123519866 -25263606 - MIR SINE MIR -94 168 81 234 29 29 0 chr11 123519908 123519942 -25263530 + (TTTG)n Simple_repeat Simple_repeat 2 180 0 1822 165 11 11 chr11 123519942 123520227 -25263245 - AluSx SINE Alu -1 318 1 571 230 27 128 chr11 123520854 123520979 -25262493 + MIR SINE MIR 31 121 -141 1607 147 4 16 chr11 123520979 123521264 -25262208 + AluJo SINE Alu 47 328 0 571 230 27 128 chr11 123521264 123521393 -25262079 + MIR SINE MIR 121 261 -1 186 103 0 0 chr11 123523555 123523584 -25259888 + (CA)n Simple_repeat Simple_repeat 2 30 0 320 310 35 35 chr11 123524662 123524807 -25258665 - MER5A DNA MER1_type -2 187 43 185 285 41 113 chr11 123526532 123526753 -25256719 - L3 LINE CR1 -309 1268 1064 629 269 34 64 chr11 123526838 123527102 -25256370 - MIR SINE MIR -1 261 6 497 229 22 33 chr11 123527892 123528039 -25255433 + MIR SINE MIR 56 201 -61 2381 112 0 6 chr11 123528056 123528368 -25255104 + AluSx SINE Alu 1 310 -2 6048 63 12 6 chr11 123528375 123529190 -25254282 + L1PA8 LINE L1 5351 6170 -2 225 0 0 0 chr11 123529224 123529249 -25254223 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 315 0 0 0 chr11 123529248 123529283 -25254189 + (GA)n Simple_repeat Simple_repeat 2 36 0 2302 93 0 0 chr11 123529283 123529562 -25253910 - AluSp SINE Alu -34 279 1 334 315 195 49 chr11 123529974 123530282 -25253190 + L3 LINE CR1 268 620 -957 682 291 32 28 chr11 123530601 123530852 -25252620 + MIR SINE MIR 11 262 0 262 267 0 0 chr11 123530977 123531037 -25252435 + (CA)n Simple_repeat Simple_repeat 1 60 0 304 331 16 8 chr11 123531146 123531273 -25252199 + L2 LINE L2 2918 3045 -227 279 208 52 52 chr11 123531315 123531411 -25252061 + MIR SINE MIR 107 202 -60 389 298 53 0 chr11 123532653 123532784 -25250688 - MIR SINE MIR -55 207 70 333 360 7 14 chr11 123533485 123533624 -25249848 - L2 LINE L2 -25 3288 3151 952 85 36 6 chr11 123534074 123534239 -25249233 + CT-rich Low_complexity Low_complexity 3 172 0 402 241 69 9 chr11 123534605 123534721 -25248751 - MIR3 SINE MIR -4 204 82 434 337 22 0 chr11 123535092 123535262 -25248210 + MIR SINE MIR 18 192 -38 1597 176 16 90 chr11 123535864 123536175 -25247297 - MLT1A1 LTR MaLR 0 365 32 290 0 75 0 chr11 123536175 123536215 -25247257 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 2072 97 4 0 chr11 123536216 123536475 -25246997 - AluSp SINE Alu -33 280 21 1597 176 16 90 chr11 123536475 123536548 -25246924 - MLT1A1 LTR MaLR -332 33 8 232 342 79 0 chr11 123536868 123536982 -25246490 + MIR SINE MIR 70 192 -70 2327 154 39 7 chr11 123537774 123538208 -25245264 + L1MB3 LINE L1 5683 6130 -53 331 157 0 0 chr11 123538209 123538260 -25245212 + AluS SINE Alu 7 57 -246 356 141 56 14 chr11 123538260 123538331 -25245141 + L1MB3 LINE L1 6057 6130 -53 2364 91 17 0 chr11 123538332 123538630 -25244842 + AluSq SINE Alu 7 309 -4 225 0 0 0 chr11 123538769 123538794 -25244678 + (A)n Simple_repeat Simple_repeat 1 25 0 566 259 68 116 chr11 123539405 123539802 -25243670 - LTR67 LTR ERVL -22 535 158 363 292 128 14 chr11 123539955 123540174 -25243298 + L2 LINE L2 2513 2756 -558 231 315 35 35 chr11 123540368 123540511 -25242961 + MER5A DNA MER1_type 47 189 0 246 254 0 0 chr11 123540514 123540569 -25242903 - MIR3 SINE MIR -51 157 103 259 332 149 57 chr11 123541193 123541494 -25241978 + L2 LINE L2 2939 3267 -5 206 303 156 47 chr11 123542695 123543055 -25240417 + L2 LINE L2 2579 2977 -337 4309 162 31 33 chr11 123543278 123543343 -25240129 + L1P5 LINE L1 4334 4398 -1753 189 0 0 0 chr11 123543343 123543364 -25240108 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 4309 162 31 33 chr11 123543364 123543526 -25239946 + L1P5 LINE L1 4398 4559 -1592 2439 94 0 0 chr11 123543526 123543835 -25239637 + AluY SINE Alu 1 309 -2 4309 162 31 33 chr11 123543835 123544981 -25238491 + L1P5 LINE L1 4559 5704 -447 265 193 72 24 chr11 123546080 123546163 -25237309 - MER103 DNA DNA -58 108 22 200 354 13 0 chr11 123547494 123547573 -25235899 - MIR SINE MIR -4 258 179 701 331 27 57 chr11 123547590 123548028 -25235444 - L2 LINE L2 0 3272 2848 341 319 63 46 chr11 123548073 123548358 -25235114 - L2 LINE L2 -615 2699 2410 * 428 162 212 0 chr11 123548350 123548449 -25235023 + L2 LINE L2 3187 3306 -7 498 242 148 28 chr11 123548465 123548647 -25234825 - L2 LINE L2 -910 2404 2201 2311 120 13 0 chr11 123548655 123548963 -25234509 + AluSq SINE Alu 1 312 -1 323 218 35 11 chr11 123548989 123549076 -25234396 - L2 LINE L2 -71 3242 3154 1889 242 221 22 chr11 123549221 123550296 -25233176 - L2 LINE L2 -228 3085 1796 466 253 60 13 chr11 123550330 123550480 -25232992 - MIR SINE MIR -86 176 20 361 252 32 24 chr11 123550977 123551100 -25232372 + L1ME4a LINE L1 5774 5897 -224 329 261 69 23 chr11 123551153 123551283 -25232189 + L1ME4a LINE L1 5975 6110 -11 183 313 48 0 chr11 123551334 123551417 -25232055 - L2 LINE L2 -99 3214 3128 232 285 98 98 chr11 123552321 123552598 -25230874 + L2 LINE L2 2912 3188 -84 760 293 10 0 chr11 123552802 123553000 -25230472 - MIR SINE MIR -4 258 59 1752 168 20 7 chr11 123554542 123554839 -25228633 - AluJo SINE Alu -11 301 1 214 355 89 16 chr11 123554957 123555081 -25228391 + MIR3 SINE MIR 11 143 -65 254 301 24 12 chr11 123555174 123555257 -25228215 - MIR3 SINE MIR -36 172 89 242 341 34 23 chr11 123555633 123555721 -25227751 + MER91A DNA MER1_type 104 192 -4 374 288 0 72 chr11 123556468 123556607 -25226865 + MER5B DNA MER1_type 1 129 -49 204 348 80 28 chr11 123556723 123556935 -25226537 - MIR SINE MIR -24 238 17 2297 122 0 0 chr11 123558471 123558774 -25224698 + AluSx SINE Alu 1 303 -9 558 249 17 28 chr11 123560402 123560579 -25222893 + MER5B DNA MER1_type 4 178 0 569 233 69 25 chr11 123561711 123561870 -25221602 + MER3 DNA MER1_type 23 188 -21 215 277 15 15 chr11 123562323 123562388 -25221084 + MIR SINE MIR 28 92 -170 208 329 157 7 chr11 123563685 123563825 -25219647 + MIR SINE MIR 28 188 -74 343 282 51 0 chr11 123565827 123565944 -25217528 + L2 LINE L2 3175 3297 -16 245 143 0 20 chr11 123566695 123566744 -25216728 + (TCCC)n Simple_repeat Simple_repeat 2 49 0 183 304 109 0 chr11 123569164 123569256 -25214216 + MIR SINE MIR 36 137 -71 224 264 198 13 chr11 123570213 123570365 -25213107 - MIR SINE MIR 0 262 81 509 279 130 0 chr11 123570384 123570538 -25212934 + MIR SINE MIR 2 175 -87 403 226 111 83 chr11 123572024 123572205 -25211267 + MIR SINE MIR 13 198 -64 790 244 35 23 chr11 123572787 123573032 -25210440 - MIR SINE MIR -14 248 3 222 254 18 0 chr11 123575581 123575636 -25207836 - MIR SINE MIR -51 211 156 232 262 24 36 chr11 123575782 123575866 -25207606 - MIR SINE MIR -68 140 58 236 250 0 0 chr11 123575976 123576032 -25207440 + (CA)n Simple_repeat Simple_repeat 1 56 0 1882 238 63 27 chr11 123576555 123577153 -25206319 + MER74B LTR ERVL 1 620 -2 211 280 0 0 chr11 123577173 123577223 -25206249 - MIR SINE MIR -71 137 88 351 96 0 0 chr11 123577542 123577594 -25205878 + (CA)n Simple_repeat Simple_repeat 1 52 0 222 214 0 0 chr11 123578300 123578342 -25205130 + CT-rich Low_complexity Low_complexity 1 42 0 380 246 18 18 chr11 123578342 123578452 -25205020 - L2 LINE L2 0 3272 3163 392 279 125 6 chr11 123578625 123578799 -25204673 - MIR SINE MIR -59 149 5 196 307 59 40 chr11 123578882 123578983 -25204489 - MIR SINE MIR -64 144 42 256 304 39 20 chr11 123579102 123579204 -25204268 - MIR SINE MIR -2 260 157 188 306 129 24 chr11 123579456 123579580 -25203892 + MIR3 SINE MIR 8 144 -64 212 351 11 32 chr11 123579645 123579739 -25203733 - MIR SINE MIR -158 104 13 731 217 13 7 chr11 123580400 123580552 -25202920 - MIR SINE MIR -4 258 106 194 397 30 15 chr11 123581349 123581378 -25202094 + MIR SINE MIR 94 121 -141 2377 104 0 22 chr11 123581378 123581695 -25201777 - AluSg SINE Alu 0 310 1 194 397 30 15 chr11 123581695 123581796 -25201676 + MIR SINE MIR 121 226 -36 566 268 54 36 chr11 123582088 123582312 -25201160 + MIR SINE MIR 35 262 0 185 274 0 0 chr11 123583066 123583117 -25200355 - L2 LINE L2 0 3272 3222 652 342 117 18 chr11 123583169 123583820 -25199652 - L2 LINE L2 0 3272 2563 276 275 100 50 chr11 123583797 123583957 -25199515 - L2 LINE L2 -164 3108 2941 * 283 329 116 67 chr11 123584068 123584457 -25199015 - L2 LINE L2 -551 2763 2356 241 306 32 0 chr11 123585041 123585103 -25198369 - L2 LINE L2 0 3272 3209 235 232 43 0 chr11 123585226 123585295 -25198177 - MIR SINE MIR -48 214 143 241 233 0 0 chr11 123585296 123585339 -25198133 + 5S rRNA rRNA 1 43 -78 849 277 151 18 chr11 123585851 123585868 -25197604 - LTR16A LTR ERVL 0 450 437 2048 156 7 70 chr11 123585868 123586284 -25197188 + MLT1B LTR MaLR 1 390 0 849 277 151 18 chr11 123586284 123586663 -25196809 - LTR16A LTR ERVL -13 437 1 1835 137 4 11 chr11 123586752 123587029 -25196443 - AluJo SINE Alu -17 295 21 2381 78 0 3 chr11 123587372 123587667 -25195805 - AluY SINE Alu -17 294 1 517 276 179 5 chr11 123587877 123588068 -25195404 + MIR SINE MIR 29 251 -11 562 212 7 53 chr11 123588434 123588585 -25194887 - MER104 DNA Tc2 0 180 37 214 261 36 81 chr11 123589660 123589771 -25193701 - L3b LINE CR1 -138 1445 1340 477 50 0 0 chr11 123590405 123590465 -25193007 + (TC)n Simple_repeat Simple_repeat 2 61 0 1592 202 72 41 chr11 123594353 123594869 -25188603 + L1MC5 LINE L1 7380 7911 -50 422 300 62 8 chr11 123595242 123595372 -25188100 - MIR SINE MIR -10 252 116 462 259 175 5 chr11 123596349 123596538 -25186934 + MIR SINE MIR 37 257 -5 356 267 11 0 chr11 123597595 123597685 -25185787 - MIR3 SINE MIR -1 207 117 2192 117 3 0 chr11 123597687 123597978 -25185494 + AluSx SINE Alu 1 292 -20 1375 188 6 31 chr11 123598006 123598325 -25185147 + AluJo SINE Alu 1 311 -1 409 208 0 24 chr11 123598327 123598452 -25185020 + GA-rich Low_complexity Low_complexity 3 124 0 245 29 29 0 chr11 123598616 123598650 -25184822 + (TA)n Simple_repeat Simple_repeat 2 36 0 2394 104 0 43 chr11 123598658 123599032 -25184440 + L1PB1 LINE L1 5794 6151 0 503 275 139 23 chr11 123599437 123599783 -25183689 + LTR33 LTR ERVL 1 386 -135 2046 89 16 0 chr11 123599789 123600046 -25183426 - AluSq SINE Alu -52 261 1 184 296 0 14 chr11 123602039 123602110 -25181362 - MIR SINE MIR -25 237 168 683 242 26 26 chr11 123602239 123602429 -25181043 + MER117 DNA MER1_type 2 191 -6 764 333 0 0 chr11 123602549 123602765 -25180707 + MIR SINE MIR 47 262 0 303 344 72 8 chr11 123603708 123603833 -25179639 + L2 LINE L2 301 433 -2881 231 317 0 0 chr11 123604386 123604446 -25179026 + L2 LINE L2 3251 3310 -3 219 36 0 0 chr11 123604519 123604547 -25178925 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 231 339 68 0 chr11 123604547 123604650 -25178822 - MIR SINE MIR -85 123 20 251 376 32 21 chr11 123604692 123604878 -25178594 - L2 LINE L2 -219 3053 2866 236 252 54 45 chr11 123605647 123605758 -25177714 - L1ME4a LINE L1 -41 6080 5969 22 0 0 0 chr11 123605760 123605782 -25177690 + AT_rich Low_complexity Low_complexity 1 22 0 1487 174 62 22 chr11 123605832 123606107 -25177365 - AluJo SINE Alu -25 287 2 315 304 9 26 chr11 123606149 123606264 -25177208 - L1MC4a LINE L1 -1914 5894 5782 578 337 101 22 chr11 123606373 123606830 -25176642 + L2 LINE L2 2815 3307 -6 239 217 116 78 chr11 123606851 123606980 -25176492 - L1MC4a LINE L1 -486 5635 5502 2400 210 57 15 chr11 123609269 123609813 -25173659 + MLT1F1 LTR MaLR 1 567 0 247 279 48 83 chr11 123609881 123610110 -25173362 + L1ME LINE L1 5600 5820 -301 * 517 264 122 45 chr11 123610105 123610654 -25172818 + L1ME LINE L1 3426 4016 -2130 2434 56 0 0 chr11 123610663 123610996 -25172476 + AluY SINE Alu 1 333 0 505 315 0 0 chr11 123610997 123611194 -25172278 + L1ME LINE L1 4080 4276 -1870 314 98 20 0 chr11 123611198 123611249 -25172223 + Charlie1 DNA MER1_type 2457 2508 -253 410 245 92 11 chr11 123611259 123611443 -25172029 - L1MC4a LINE L1 -1556 4590 4392 1240 185 104 48 chr11 123611443 123611518 -25171954 - Charlie1a DNA MER1_type -2407 354 285 2306 110 0 7 chr11 123611518 123611819 -25171653 - AluSx SINE Alu -12 300 2 1240 185 104 48 chr11 123611819 123612078 -25171394 - Charlie1a DNA MER1_type -2476 285 1 272 370 8 0 chr11 123612081 123612208 -25171264 + L1ME LINE L1 5652 5779 -391 1566 210 3 27 chr11 123612282 123612582 -25170890 + AluJo SINE Alu 1 293 -19 627 305 113 70 chr11 123613386 123613802 -25169670 + HAL1 LINE L1 1103 1536 -971 1107 139 81 12 chr11 123613803 123613976 -25169496 + AluJb SINE Alu 128 312 0 255 263 0 25 chr11 123614296 123614376 -25169096 - MIR SINE MIR -6 256 179 2449 80 0 0 chr11 123614502 123614804 -25168668 + AluY SINE Alu 1 302 -9 2205 123 0 0 chr11 123615042 123615327 -25168145 + AluSq SINE Alu 1 285 -28 282 278 56 0 chr11 123615401 123615491 -25167981 + L1MC/D LINE L1 5717 5811 -1997 385 254 116 44 chr11 123615971 123616152 -25167320 + MIR SINE MIR 13 206 -56 255 177 0 0 chr11 123616594 123616656 -25166816 + (CAGAGA)n Simple_repeat Simple_repeat 3 64 0 256 271 57 29 chr11 123618277 123618347 -25165125 - MIR SINE MIR -74 188 117 2369 141 30 59 chr11 123618960 123619399 -25164073 + MSTB LTR MaLR 1 426 0 423 0 0 0 chr11 123619552 123619599 -25163873 + (TC)n Simple_repeat Simple_repeat 1 47 0 249 269 15 77 chr11 123619743 123619873 -25163599 + G-rich Low_complexity Low_complexity 3 124 0 372 298 99 37 chr11 123620217 123620378 -25163094 - MIR3 SINE MIR -6 202 32 774 178 136 0 chr11 123620853 123621022 -25162450 - MER3 DNA MER1_type 0 209 18 266 287 0 32 chr11 123621888 123621982 -25161490 + MER5B DNA MER1_type 20 110 -68 200 114 29 0 chr11 123622094 123622129 -25161343 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 739 233 15 17 chr11 123622183 123622356 -25161116 + MER5B DNA MER1_type 4 160 -18 274 293 6 121 chr11 123622791 123622884 -25160588 - L2 LINE L2 -1 3271 3169 1987 114 45 0 chr11 123622884 123623173 -25160299 + AluSx SINE Alu 1 302 -10 447 19 0 0 chr11 123623179 123623231 -25160241 + (CA)n Simple_repeat Simple_repeat 2 53 0 187 292 31 31 chr11 123623231 123623296 -25160176 - MER5B DNA MER1_type -58 120 56 274 293 6 121 chr11 123623231 123623287 -25160185 - L2 LINE L2 -108 3164 3133 315 252 94 24 chr11 123624146 123624273 -25159199 + MIR SINE MIR 97 232 -30 221 242 106 61 chr11 123624522 123624654 -25158818 + MIR SINE MIR 82 219 -43 202 344 55 47 chr11 123626027 123626155 -25157317 + L2 LINE L2 3143 3271 -1 229 272 243 0 chr11 123626157 123626260 -25157212 - MIR SINE MIR -71 191 64 285 267 68 43 chr11 123626294 123626455 -25157017 - L2 LINE L2 -189 3083 2919 210 328 0 15 chr11 123626979 123627046 -25156426 - L2 LINE L2 0 3313 3248 205 261 14 14 chr11 123627751 123627820 -25155652 + CT-rich Low_complexity Low_complexity 3 71 0 294 278 35 69 chr11 123627969 123628142 -25155330 + MIR SINE MIR 18 184 -78 228 321 0 0 chr11 123628346 123628399 -25155073 - MIR SINE MIR -80 128 76 193 286 0 0 chr11 123628545 123628587 -25154885 - MIR3 SINE MIR -41 167 126 197 242 0 15 chr11 123629174 123629231 -25154241 + (TG)n Simple_repeat Simple_repeat 1 58 -7 1540 221 53 37 chr11 123629231 123629687 -25153785 - MLT2C2 LTR ERVL 0 464 2 197 242 0 15 chr11 123629687 123629695 -25153777 + (TG)n Simple_repeat Simple_repeat 58 65 0 243 301 0 58 chr11 123630374 123630477 -25152995 - L3b LINE CR1 -211 1372 1276 636 301 38 11 chr11 123630530 123630895 -25152577 - L1M4 LINE L1 -1315 4831 4457 1253 244 85 12 chr11 123630908 123631248 -25152224 - LTR16C LTR ERVL -4 487 123 309 285 220 5 chr11 123631368 123631554 -25151918 + L3 LINE CR1 1307 1532 -45 354 186 20 10 chr11 123633003 123633105 -25150367 + CT-rich Low_complexity Low_complexity 2 104 0 759 314 138 6 chr11 123633105 123633452 -25150020 - L2 LINE L2 -1 3312 2920 200 224 0 60 chr11 123634869 123634936 -25148536 + A-rich Low_complexity Low_complexity 3 65 0 787 115 16 16 chr11 123635113 123635235 -25148237 + AluSg/x SINE Alu 184 305 -7 4629 86 45 40 chr11 123635281 123636494 -25146978 + SVA Other Other 1 1413 0 315 0 0 0 chr11 123636686 123636721 -25146751 + (A)n Simple_repeat Simple_repeat 1 35 0 264 361 0 0 chr11 123636730 123636813 -25146659 - MIR SINE MIR -87 121 39 242 274 98 0 chr11 123637076 123637178 -25146294 - L3b LINE CR1 -343 1240 1129 817 247 40 45 chr11 123638223 123638470 -25145002 + Charlie8 DNA MER1_type 1 246 -2171 958 107 0 0 chr11 123638559 123638690 -25144782 + AluY SINE Alu 11 141 -170 864 108 0 0 chr11 123638690 123638810 -25144662 + AluSg/x SINE Alu 179 298 -14 491 172 107 8 chr11 123638864 123638986 -25144486 + L1MC5 LINE L1 7701 7834 -127 241 291 0 25 chr11 123639110 123639189 -25144283 + Charlie8 DNA MER1_type 1352 1428 -989 272 289 70 91 chr11 123640046 123640288 -25143184 + L2 LINE L2 3005 3241 -31 1852 130 31 3 chr11 123640880 123641172 -25142300 - AluSx SINE Alu -1 311 12 434 286 32 24 chr11 123641522 123641648 -25141824 - L2 LINE L2 -2 3270 3144 2078 158 20 0 chr11 123641932 123642281 -25141191 + L1MD3 LINE L1 7620 7975 -20 347 263 217 30 chr11 123642562 123642760 -25140712 - MIR SINE MIR -5 257 23 356 341 88 18 chr11 123643228 123643398 -25140074 - MIR SINE MIR -14 248 67 186 189 0 0 chr11 123644321 123644358 -25139114 + A-rich Low_complexity Low_complexity 1 37 0 330 324 20 59 chr11 123644525 123644729 -25138743 + MIR3 SINE MIR 11 206 -2 330 248 191 0 chr11 123646958 123647063 -25136409 - Charlie8 DNA MER1_type -2218 199 75 402 277 15 36 chr11 123647175 123647312 -25136160 - MIR SINE MIR -80 182 49 3082 189 48 26 chr11 123647370 123647993 -25135479 + ERVL LTR ERVL 1574 2210 -3554 778 200 67 67 chr11 123648169 123648329 -25135143 + LTR37B LTR ERV1 184 347 -121 1889 110 8 0 chr11 123648329 123648619 -25134853 - AluSx SINE Alu 0 309 18 778 200 67 67 chr11 123648619 123648742 -25134730 + LTR37B LTR ERV1 346 468 0 342 67 0 0 chr11 123649272 123649317 -25134155 + (TG)n Simple_repeat Simple_repeat 1 45 0 188 758 0 0 chr11 123649494 123649626 -25133846 + T-rich Low_complexity Low_complexity 1 132 0 465 34 0 0 chr11 123649686 123649745 -25133727 + (A)n Simple_repeat Simple_repeat 1 59 0 521 303 62 28 chr11 123649890 123650180 -25133292 + L1MC/D LINE L1 2110 2409 -3737 379 164 155 35 chr11 123650180 123650296 -25133176 + L1MA6 LINE L1 5896 6025 -275 403 196 98 68 chr11 123650325 123650488 -25132984 + L1MA6 LINE L1 5953 6120 -180 209 114 68 0 chr11 123650489 123650533 -25132939 + (TATAA)n Simple_repeat Simple_repeat 3 49 0 963 160 21 11 chr11 123650545 123650732 -25132740 + L1MA6 LINE L1 6103 6291 -9 447 330 48 26 chr11 123650754 123651024 -25132448 + L1MC/D LINE L1 2425 2700 -3446 767 307 140 54 chr11 123651026 123651884 -25131588 + L1MC/D LINE L1 2760 3685 -2461 1249 213 41 17 chr11 123651897 123652188 -25131284 - MLT1A2 LTR MaLR 0 374 77 369 244 71 55 chr11 123652253 123652380 -25131092 + L1MC/D LINE L1 5111 5239 -907 491 265 21 38 chr11 123652384 123652622 -25130850 + L1MC/D LINE L1 5256 5489 -2319 363 222 94 34 chr11 123652601 123652718 -25130754 - L1ME LINE L1 -508 5613 5490 * 605 281 55 10 chr11 123652709 123652908 -25130564 + L1MC/D LINE L1 5530 5737 -2071 556 233 159 17 chr11 123653232 123653408 -25130064 - MIR SINE MIR -12 250 50 476 310 61 83 chr11 123654077 123654438 -25129034 + L2 LINE L2 2918 3270 -2 310 225 101 105 chr11 123654738 123655052 -25128420 + MLT1G1 LTR MaLR 224 555 0 411 381 0 0 chr11 123655811 123655950 -25127522 + L2 LINE L2 3134 3272 0 241 342 67 40 chr11 123656093 123656242 -25127230 + MIR SINE MIR 70 222 -40 328 268 152 37 chr11 123656389 123656553 -25126919 - MER5A DNA MER1_type -3 186 4 431 350 21 5 chr11 123657564 123657750 -25125722 - MIR SINE MIR -66 196 8 639 173 7 80 chr11 123707880 123707953 -25075519 - MER5A DNA MER1_type -50 139 81 1530 94 195 12 chr11 123707953 123708209 -25075263 - AluSg1 SINE Alu -6 303 1 639 173 7 80 chr11 123708209 123708285 -25075187 - MER5A DNA MER1_type -108 81 1 1337 194 4 16 chr11 123708625 123708867 -25074605 + MER8 DNA MER2_type 1 239 0 281 111 0 0 chr11 123709006 123709042 -25074430 - tRNA-Arg-AGA tRNA tRNA -40 36 1 1318 251 31 48 chr11 123709326 123709741 -25073731 + L1MB7 LINE L1 16 423 -6119 * 3310 195 109 114 chr11 123709732 123711056 -25072416 + L1MB7 LINE L1 1473 2931 -3713 873 139 0 23 chr11 123711056 123711185 -25072287 + AluJb SINE Alu 1 126 -186 3310 195 109 114 chr11 123711185 123711498 -25071974 + L1MB7 LINE L1 2931 3244 -3400 3201 165 18 21 chr11 123711500 123712059 -25071413 + L1MB7 LINE L1 5967 6525 -157 2717 147 107 2 chr11 123712059 123712516 -25070956 - LTR10B LTR ERV1 0 505 1 3201 165 18 21 chr11 123712516 123712527 -25070945 + L1MB7 LINE L1 6525 6535 -147 546 157 93 3 chr11 123712532 123712673 -25070799 - LTR47A LTR ERVL 0 452 261 862 135 21 0 chr11 123712901 123713042 -25070430 + L1MB7 LINE L1 6539 6682 0 278 233 0 5 chr11 123714445 123714513 -25068959 - MER115 DNA AcHobo -646 47 1 1252 185 22 18 chr11 123714619 123714846 -25068626 + Charlie1a DNA MER1_type 1 228 -1227 7505 40 5 2 chr11 123714883 123716450 -25067022 - L1PA3 LINE L1 -5 6150 4581 274 197 26 105 chr11 123716861 123716893 -25066579 - L2 LINE L2 -5 3267 3234 1269 257 79 11 chr11 123716893 123717274 -25066198 + MLT1I LTR MaLR 2 408 -1 274 197 26 105 chr11 123717274 123717317 -25066155 - L2 LINE L2 -38 3234 3198 221 234 0 52 chr11 123717642 123717719 -25065753 + MER5B DNA MER1_type 106 178 0 16435 107 17 15 chr11 123718673 123721083 -25062389 + L1P LINE L1 11 2424 -3722 1982 158 3 0 chr11 123721749 123722041 -25061431 - AluSx SINE Alu -18 294 2 921 232 8 8 chr11 123722043 123722280 -25061192 - L1M4 LINE L1 -3725 2421 2185 2358 58 31 3 chr11 123722475 123722767 -25060705 - AluY SINE Alu -11 300 1 863 161 19 31 chr11 123722801 123722962 -25060510 + AluJb SINE Alu 105 263 -49 225 0 0 0 chr11 123723077 123723102 -25060370 + (TCTG)n Simple_repeat Simple_repeat 2 26 0 265 318 54 64 chr11 123723840 123724043 -25059429 + MIR SINE MIR 5 204 -58 2102 96 27 0 chr11 123724157 123724450 -25059022 - AluSg SINE Alu -9 301 1 2085 105 10 3 chr11 123724665 123724961 -25058511 + AluSq SINE Alu 1 298 -15 430 289 120 21 chr11 123724968 123725168 -25058304 - MIR SINE MIR -20 242 25 1698 114 100 7 chr11 123725714 123725985 -25057487 + MSTA LTR MaLR 133 428 0 217 253 216 25 chr11 123725985 123726147 -25057325 - L2 LINE L2 -341 2973 2781 604 64 43 0 chr11 123726224 123726318 -25057154 + L1PB2 LINE L1 6054 6151 0 207 0 0 0 chr11 123726927 123726950 -25056522 + (GA)n Simple_repeat Simple_repeat 2 24 0 284 267 164 61 chr11 123727211 123727376 -25056096 + MIR3 SINE MIR 16 197 -11 391 240 144 8 chr11 123727689 123727814 -25055658 - MER96 DNA MER1_type? -22 153 12 7160 53 5 2 chr11 123727922 123729479 -25053993 - L1PA7 LINE L1 -13 6141 4581 306 200 27 93 chr11 123729889 123729920 -25053552 - L2 LINE L2 -5 3267 3236 1281 256 78 11 chr11 123729920 123730302 -25053170 + MLT1I LTR MaLR 1 408 -1 306 200 27 93 chr11 123730302 123730345 -25053127 - L2 LINE L2 -36 3236 3198 208 324 76 48 chr11 123730602 123730747 -25052725 - MER5B DNA MER1_type -29 149 1 194 228 53 18 chr11 123731168 123731225 -25052247 + L2 LINE L2 3163 3221 -92 16482 107 17 15 chr11 123731701 123734111 -25049361 + L1P LINE L1 11 2424 -3722 1862 158 3 0 chr11 123734777 123735069 -25048403 - AluSx SINE Alu -18 294 2 7789 211 51 33 chr11 123735071 123735889 -25047583 - L1M4 LINE L1 -3725 2919 2117 1981 131 65 33 chr11 123735889 123736225 -25047247 - MER7A DNA MER2_type -1 345 1 7789 211 51 33 chr11 123736225 123736684 -25046788 - L1M4 LINE L1 -4527 2117 1668 354 45 0 0 chr11 123736684 123736728 -25046744 + (CA)n Simple_repeat Simple_repeat 2 45 0 7789 211 51 33 chr11 123736728 123738277 -25045195 - L1M4 LINE L1 -4976 1668 2 2309 139 62 34 chr11 123738733 123739149 -25044323 + MSTA LTR MaLR 1 428 0 255 61 0 0 chr11 123739200 123739233 -25044239 + (CAA)n Simple_repeat Simple_repeat 1 33 0 510 274 249 0 chr11 123739234 123739431 -25044041 - MIR SINE MIR 0 262 17 180 111 0 0 chr11 123740312 123740339 -25043133 + (TC)n Simple_repeat Simple_repeat 1 27 0 223 289 22 44 chr11 123741630 123741720 -25041752 - L2 LINE L2 -1 3312 3225 370 306 94 60 chr11 123741773 123742162 -25041310 - L2 LINE L2 -221 3051 2633 320 313 52 0 chr11 123742180 123742276 -25041196 - MIR SINE MIR -110 152 52 259 338 117 27 chr11 123742278 123742500 -25040972 + L2 LINE L2 2812 3053 -219 2348 146 8 13 chr11 123742548 123742925 -25040547 - THE1C LTR MaLR 0 375 1 8512 120 43 54 chr11 123742931 123744149 -25039323 - THE1C-int LTR MaLR -7 1573 644 4331 64 25 3 chr11 123744149 123744714 -25038758 + L1PA8 LINE L1 5596 6172 0 8512 120 43 54 chr11 123744714 123745325 -25038147 - THE1C-int LTR MaLR -936 644 28 2385 127 8 13 chr11 123745337 123745714 -25037758 - THE1C LTR MaLR 0 375 1 288 204 48 48 chr11 123746971 123747074 -25036398 + L3b LINE CR1 1276 1378 -205 221 179 0 18 chr11 123747131 123747187 -25036285 + (CAGAGA)n Simple_repeat Simple_repeat 3 57 0 770 99 8 0 chr11 123747189 123747320 -25036152 + (GA)n Simple_repeat Simple_repeat 2 133 0 456 278 61 33 chr11 123748088 123748226 -25035246 + MIR SINE MIR 78 224 -38 1560 162 47 91 chr11 123748226 123748634 -25034838 - MLT1B LTR MaLR 0 390 1 456 278 61 33 chr11 123748634 123748675 -25034797 + MIR SINE MIR 224 262 0 * 550 341 23 6 chr11 123748664 123748837 -25034635 + MIR SINE MIR 12 187 -75 511 279 8 8 chr11 123749892 123750035 -25033437 - MIR SINE MIR -65 143 9 300 337 74 0 chr11 123751582 123751677 -25031795 - L2 LINE L2 -33 3239 3138 1880 94 87 4 chr11 123752231 123752508 -25030964 - AluSx SINE Alu -12 300 1 498 181 16 159 chr11 123752593 123752775 -25030697 + L2 LINE L2 3158 3313 0 228 164 219 0 chr11 123752835 123752908 -25030564 - MIR SINE MIR -115 147 59 192 352 99 0 chr11 123753034 123753125 -25030347 - L2 LINE L2 -16 3256 3157 215 305 110 34 chr11 123753786 123753904 -25029568 - MIR SINE MIR -56 206 80 181 293 7 7 chr11 123754024 123754174 -25029298 + (CA)n Simple_repeat Simple_repeat 2 151 0 2292 109 0 0 chr11 123754306 123754618 -25028854 + AluSx SINE Alu 1 312 0 936 248 78 33 chr11 123754875 123755234 -25028238 + MER113 DNA MER1_type? 147 521 0 180 111 0 0 chr11 123756295 123756322 -25027150 + (TGGGGG)n Simple_repeat Simple_repeat 3 29 0 4033 185 83 21 chr11 123756425 123756870 -25026602 - Charlie1a DNA MER1_type -1493 1268 852 2184 103 0 10 chr11 123756870 123757170 -25026302 + AluSx SINE Alu 1 297 -15 4033 185 83 21 chr11 123757170 123757486 -25025986 - Charlie1a DNA MER1_type -1909 852 436 2013 115 7 7 chr11 123757486 123757782 -25025690 + AluSq SINE Alu 1 296 -17 4033 185 83 21 chr11 123757782 123757959 -25025513 - Charlie1a DNA MER1_type -2325 436 271 45394 35 1 1 chr11 123757984 123764135 -25019337 + L1PA3 LINE L1 1 6153 -2 1249 185 22 18 chr11 123764169 123764396 -25019076 - Charlie1a DNA MER1_type -1227 228 1 283 233 0 5 chr11 123764502 123764570 -25018902 + MER115 DNA AcHobo 1 47 -646 853 135 21 0 chr11 123765973 123766114 -25017358 - L1MB7 LINE L1 0 6682 6539 546 157 93 3 chr11 123766342 123766483 -25016989 + LTR47A LTR ERVL 261 452 0 3169 165 18 21 chr11 123766488 123766499 -25016973 - L1MB7 LINE L1 -147 6535 6525 2712 147 107 2 chr11 123766499 123766956 -25016516 + LTR10B LTR ERV1 1 505 0 3169 165 18 21 chr11 123766956 123767515 -25015957 - L1MB7 LINE L1 -157 6525 5967 3236 218 108 70 chr11 123767517 123767830 -25015642 - L1MB7 LINE L1 -3400 3244 2944 819 139 0 23 chr11 123767830 123767959 -25015513 - AluJb SINE Alu -186 126 1 3236 218 108 70 chr11 123767959 123769283 -25014189 - L1MB7 LINE L1 -3700 2944 1473 1303 251 31 48 chr11 123769274 123769689 -25013783 - L1MB7 LINE L1 -6119 423 16 * 281 111 0 0 chr11 123769973 123770009 -25013463 + tRNA-Arg-AGA tRNA tRNA 1 36 -40 1333 194 4 16 chr11 123770148 123770390 -25013082 - MER8 DNA MER2_type 0 239 1 1044 150 0 64 chr11 123770730 123770806 -25012666 + MER5A DNA MER1_type 1 80 -109 1414 97 195 12 chr11 123770806 123771063 -25012409 + AluSg1 SINE Alu 1 304 -5 1044 150 0 64 chr11 123771063 123771173 -25012299 + MER5A DNA MER1_type 80 175 -14 4875 75 18 24 chr11 123771703 123772374 -25011098 + PABL_B LTR ERV1 1 667 0 640 252 19 19 chr11 123772467 123772622 -25010850 + MER5B DNA MER1_type 24 178 0 765 266 236 21 chr11 123772820 123773154 -25010318 - L2 LINE L2 -2 3311 2906 420 246 114 73 chr11 123773140 123773249 -25010223 - MIR SINE MIR -32 230 127 * 1893 118 4 0 chr11 123773249 123773519 -25009953 + AluSx SINE Alu 1 271 -41 5789 33 0 0 chr11 123773514 123774182 -25009290 + L1PA4 LINE L1 5488 6155 0 420 246 114 73 chr11 123774182 123774291 -25009181 - MIR SINE MIR -134 128 2 339 85 0 0 chr11 123774498 123774545 -25008927 + (CA)n Simple_repeat Simple_repeat 2 48 0 213 39 0 0 chr11 123774855 123774881 -25008591 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 1258 127 5 63 chr11 123774889 123775110 -25008362 - MER74A LTR ERVL -346 212 5 209 164 90 60 chr11 123775114 123775181 -25008291 + L2 LINE L2 3181 3249 -23 367 169 12 36 chr11 123776040 123776123 -25007349 - MIR SINE MIR -97 165 85 690 295 51 13 chr11 123776247 123776484 -25006988 + MIR SINE MIR 11 256 -6 1242 227 8 4 chr11 123777821 123778068 -25005404 + MIR SINE MIR 1 248 -14 286 321 87 47 chr11 123779108 123779560 -25003912 + L2 LINE L2 2715 3191 -81 232 246 18 18 chr11 123779593 123779650 -25003822 + GA-rich Low_complexity Low_complexity 3 59 0 220 250 19 0 chr11 123779834 123779886 -25003586 - MIR SINE MIR -61 147 95 289 296 70 35 chr11 123780343 123780458 -25003014 + L2 LINE L2 3149 3267 -5 240 391 43 0 chr11 123780591 123780706 -25002766 - MIR SINE MIR -108 154 35 490 191 29 0 chr11 123781385 123781490 -25001982 - MER96 DNA MER1_type? -67 108 1 883 240 128 27 chr11 123781659 123781955 -25001517 + MER115 DNA AcHobo 357 682 -11 519 191 24 0 chr11 123782367 123782451 -25001021 + AluS SINE Alu 1 86 -227 662 204 9 0 chr11 123783939 123784052 -24999420 + MER81 DNA DNA 1 114 0 241 271 9 93 chr11 123784650 123784757 -24998715 - MIR3 SINE MIR -20 188 91 2095 118 7 29 chr11 123786504 123786810 -24996662 + AluSx SINE Alu 1 299 -13 520 245 16 34 chr11 123786938 123787089 -24996383 + MIR SINE MIR 30 175 -62 1222 103 0 29 chr11 123787815 123787989 -24995483 + AluSx SINE Alu 3 171 -141 361 273 57 34 chr11 123788089 123788265 -24995207 - MLT1C LTR MaLR -146 321 142 307 84 14 113 chr11 123788275 123788346 -24995126 - MLT2C2 LTR ERVL 0 520 457 222 211 0 0 chr11 123788352 123788390 -24995082 + (TATG)n Simple_repeat Simple_repeat 3 40 0 2302 159 68 3 chr11 123788421 123788841 -24994631 - MLT2C2 LTR ERVL -20 416 1 482 276 115 20 chr11 123788916 123789220 -24994252 - L1M4 LINE L1 -1183 4963 4631 356 307 32 83 chr11 123789249 123789467 -24994005 + HAL1 LINE L1 2 208 -2299 505 306 118 31 chr11 123790073 123790879 -24992593 + L1MEd LINE L1 682 1651 -839 300 158 0 0 chr11 123791018 123791075 -24992397 + GA-rich Low_complexity Low_complexity 2 58 0 265 316 19 51 chr11 123791355 123791400 -24992072 + L1MEd LINE L1 2093 2138 -3991 1950 224 26 34 chr11 123791400 123791869 -24991603 + MLT1C LTR MaLR 3 467 0 265 316 19 51 chr11 123791869 123792079 -24991393 + L1MEd LINE L1 2138 2340 -3789 1083 318 89 42 chr11 123792092 123793903 -24989569 + L1MEd LINE L1 2408 4302 -1827 817 187 0 0 chr11 123793904 123794027 -24989445 + FLAM_C SINE Alu 2 124 -19 322 299 100 38 chr11 123794040 123794411 -24989061 + L1MEd LINE L1 4287 4680 -1449 348 256 60 56 chr11 123794418 123794633 -24988839 + L1M4 LINE L1 4387 4602 -1544 342 0 0 0 chr11 123794646 123794684 -24988788 + (CA)n Simple_repeat Simple_repeat 2 39 0 298 214 0 43 chr11 123795277 123795347 -24988125 - L2 LINE L2 0 3313 3247 437 200 60 53 chr11 123795750 123795900 -24987572 + Charlie7 DNA MER1_type 2461 2611 -1 183 129 32 0 chr11 123796555 123796586 -24986886 + L2 LINE L2 3266 3297 -16 2712 58 3 6 chr11 123797325 123797654 -24985818 + L1PA6 LINE L1 5822 6149 -5 776 293 91 14 chr11 123798154 123798581 -24984891 - L1M4 LINE L1 -1702 4444 3985 205 378 42 0 chr11 123798584 123798703 -24984769 + MER5A DNA MER1_type 21 144 -45 24 53 0 0 chr11 123798734 123798772 -24984700 + AT_rich Low_complexity Low_complexity 1 38 0 407 362 21 0 chr11 123799896 123800037 -24983435 + MIR3 SINE MIR 58 201 -7 13237 26 1 0 chr11 123800546 123802795 -24980677 + L1PA3 LINE L1 3919 6168 0 23 78 0 0 chr11 123802836 123802887 -24980585 + AT_rich Low_complexity Low_complexity 1 51 0 423 78 0 47 chr11 123803357 123803421 -24980051 + HY4 scRNA scRNA 30 90 -3 251 118 0 0 chr11 123803548 123803582 -24979890 - MLT1A2 LTR MaLR 0 390 357 1745 123 0 20 chr11 123803583 123803869 -24979603 - AluSx SINE Alu 0 312 45 2447 65 7 3 chr11 123803941 123804247 -24979225 - AluSc SINE Alu -2 307 1 730 193 21 95 chr11 123804247 123804490 -24978982 - MLT1A2 LTR MaLR -132 242 18 1608 226 78 82 chr11 123804574 123805231 -24978241 + L1MC5 LINE L1 6435 7099 -862 2284 92 7 10 chr11 123805231 123805535 -24977937 - AluY SINE Alu -8 303 1 1608 226 78 82 chr11 123805535 123805641 -24977831 + L1MC5 LINE L1 7099 7204 -757 1118 121 25 203 chr11 123805643 123805899 -24977573 + MER33 DNA MER1_type 1 301 -2323 980 194 42 13 chr11 123805899 123806136 -24977336 + L1MA8 LINE L1 6044 6287 -4 1118 121 25 203 chr11 123806136 123806206 -24977266 + MER33 DNA MER1_type 301 287 -2337 1438 243 69 17 chr11 123806206 123806613 -24976859 + MER95 LTR ERV 1 428 -3 1118 121 25 203 chr11 123806613 123806678 -24976794 + MER33 DNA MER1_type 286 361 -2 2173 204 31 36 chr11 123806679 123807292 -24976180 + L1MC5 LINE L1 7198 7807 -154 22 0 0 0 chr11 123807329 123807351 -24976121 + AT_rich Low_complexity Low_complexity 1 22 0 2064 190 18 0 chr11 123807361 123807698 -24975774 - MER2 DNA MER2_type -1 343 1 377 254 9 27 chr11 123807702 123807812 -24975660 + L1MC5 LINE L1 7810 7917 -44 1707 144 185 50 chr11 123807815 123808177 -24975295 + LTR57 LTR ERVL 1 411 0 273 250 43 17 chr11 123808316 123808432 -24975040 + (CATATA)n Simple_repeat Simple_repeat 5 123 0 783 271 19 5 chr11 123808624 123808834 -24974638 + MIR SINE MIR 2 214 -48 278 317 40 66 chr11 123808854 123809081 -24974391 - L1ME LINE L1 -353 5768 5548 907 206 6 6 chr11 123809135 123809310 -24974162 - AluJo SINE Alu 0 312 138 1139 142 41 36 chr11 123809375 123809594 -24973878 - L1MB4 LINE L1 -4 6176 5957 308 273 0 116 chr11 123809674 123809846 -24973626 + L1ME LINE L1 5552 5703 -418 776 323 38 3 chr11 123809952 123810240 -24973232 - L2 LINE L2 -866 2448 2151 22 94 0 0 chr11 123810427 123810491 -24972981 + AT_rich Low_complexity Low_complexity 1 64 0 2208 97 10 3 chr11 123810609 123810908 -24972564 + AluSx SINE Alu 1 301 -11 466 335 140 9 chr11 123811212 123811433 -24972039 - MIR SINE MIR -12 250 1 477 222 230 0 chr11 123811586 123811721 -24971751 + MER5A DNA MER1_type 18 183 -6 9040 120 14 4 chr11 123811776 123813064 -24970408 + HSMAR2 DNA Mariner 1 1301 -1 1745 195 3 0 chr11 123813298 123813595 -24969877 + AluJo SINE Alu 1 298 -14 292 255 61 31 chr11 123813740 123813838 -24969634 + MLT1J2 LTR MaLR 69 169 -281 389 264 132 36 chr11 123813875 123814042 -24969430 + MLT1J2 LTR MaLR 268 450 0 501 295 7 7 chr11 123815438 123815577 -24967895 + MIR SINE MIR 17 155 -107 220 206 14 27 chr11 123815600 123815673 -24967799 + (TTTA)n Simple_repeat Simple_repeat 3 74 0 940 163 0 0 chr11 123815692 123815833 -24967639 - AluJo SINE Alu -171 141 1 439 292 8 23 chr11 123815965 123816095 -24967377 - MER5A DNA MER1_type -2 187 60 296 226 16 40 chr11 123816217 123816341 -24967131 + (ATGGTG)n Simple_repeat Simple_repeat 3 123 0 2257 167 17 0 chr11 123817505 123817864 -24965608 - MLT1A1 LTR MaLR 0 365 1 366 232 188 0 chr11 123818144 123818256 -24965216 - MER94 DNA DNA -1 133 1 285 51 0 0 chr11 123818348 123818387 -24965085 + (TG)n Simple_repeat Simple_repeat 2 40 0 336 241 109 29 chr11 123818395 123818532 -24964940 - MIR SINE MIR -59 203 56 781 211 151 107 chr11 123818765 123818793 -24964679 - MLT1C LTR MaLR -41 426 401 1481 173 88 22 chr11 123818793 123819065 -24964407 + AluJo SINE Alu 1 290 -22 781 211 151 107 chr11 123819065 123819439 -24964033 - MLT1C LTR MaLR -66 401 6 205 284 81 0 chr11 123819822 123819896 -24963576 + MIR SINE MIR 68 147 -61 1030 113 3 29 chr11 123819931 123820241 -24963231 + (GGAA)n Simple_repeat Simple_repeat 4 303 0 22 35 0 0 chr11 123820585 123820614 -24962858 + AT_rich Low_complexity Low_complexity 1 29 0 276 132 0 0 chr11 123820952 123820979 -24962493 + (A)n Simple_repeat Simple_repeat 1 27 -26 1950 100 4 0 chr11 123820979 123821230 -24962242 + AluSx SINE Alu 6 257 -55 276 132 0 0 chr11 123821230 123821255 -24962217 + (A)n Simple_repeat Simple_repeat 26 53 0 230 343 0 0 chr11 123824201 123824274 -24959198 + MIR SINE MIR 189 261 -1 330 269 13 0 chr11 123824275 123824353 -24959119 + L2 LINE L2 3233 3311 -2 743 356 74 37 chr11 123824588 123825371 -24958101 - L2 LINE L2 -337 2977 2166 345 200 46 85 chr11 123825698 123825828 -24957644 + MLT1L LTR MaLR 491 615 0 233 263 38 12 chr11 123826021 123826101 -24957371 - MLT1L LTR MaLR -327 288 207 308 263 53 44 chr11 123826468 123826582 -24956890 - MLT1J1 LTR MaLR -22 424 310 225 0 0 0 chr11 123826814 123826839 -24956633 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 645 188 217 25 chr11 123828276 123828608 -24954864 + MER31B LTR ERV1 1 465 -1 218 211 19 0 chr11 123828998 123829050 -24954422 + (TGGA)n Simple_repeat Simple_repeat 3 55 0 3339 116 9 30 chr11 123829270 123829794 -24953678 - L1PA16 LINE L1 -1 6165 5653 1984 172 0 6 chr11 123829953 123830267 -24953205 - AluSx SINE Alu 0 312 1 267 31 0 0 chr11 123830535 123830567 -24952905 + (GGGAA)n Simple_repeat Simple_repeat 2 33 0 672 340 89 24 chr11 123831429 123832182 -24951290 - L2 LINE L2 -468 2846 2045 214 322 29 23 chr11 123832586 123832757 -24950715 + (AGGTG)n Simple_repeat Simple_repeat 1 172 0 * 258 297 28 44 chr11 123832668 123832850 -24950622 + (GGGTG)n Simple_repeat Simple_repeat 1 179 0 1942 160 3 0 chr11 123833294 123833582 -24949890 + AluJb SINE Alu 1 289 -23 180 0 0 0 chr11 123833586 123833606 -24949866 + (TG)n Simple_repeat Simple_repeat 2 21 0 314 276 103 19 chr11 123833774 123833925 -24949547 + MIR SINE MIR 53 216 -46 230 303 15 0 chr11 123833925 123833991 -24949481 - MER5A DNA MER1_type 0 189 123 343 333 54 7 chr11 123834013 123834160 -24949312 - LTR33 LTR ERVL -321 200 47 214 284 68 0 chr11 123834594 123834682 -24948790 + L2 LINE L2 3160 3253 -60 482 218 269 20 chr11 123834889 123835086 -24948386 + MIR SINE MIR 15 260 -2 222 333 91 0 chr11 123835095 123835194 -24948278 + L2 LINE L2 3155 3262 -10 213 259 37 0 chr11 123836497 123836551 -24946921 + (CATG)n Simple_repeat Simple_repeat 3 58 0 299 301 88 9 chr11 123836716 123836829 -24946643 + MIR SINE MIR 28 149 -113 429 280 170 6 chr11 123837985 123838167 -24945305 + MIR SINE MIR 23 234 -28 460 265 59 12 chr11 123838802 123838972 -24944500 - MIR3 SINE MIR -29 179 2 2188 126 0 13 chr11 123839355 123839664 -24943808 + AluSx SINE Alu 1 305 -7 193 361 28 0 chr11 123840130 123840202 -24943270 + L2 LINE L2 3193 3266 -6 7905 144 120 22 chr11 123840983 123842549 -24940923 - pTR5 LTR ERV1 0 2438 375 573 252 7 7 chr11 123842845 123842984 -24940488 - MER5A DNA MER1_type 0 189 51 2092 253 74 10 chr11 123842999 123843485 -24939987 + MLT1F LTR MaLR 26 542 0 258 178 0 0 chr11 123843485 123843530 -24939942 - MER5A DNA MER1_type -138 51 7 184 351 13 0 chr11 123843536 123843613 -24939859 + L2 LINE L2 3195 3272 0 2060 143 135 8 chr11 123843717 123844096 -24939376 - MSTA LTR MaLR 0 428 2 842 298 84 34 chr11 123845561 123846145 -24937327 + L2 LINE L2 2325 2937 -377 270 310 133 10 chr11 123846189 123846392 -24937080 + L2 LINE L2 2988 3215 -98 1952 127 79 20 chr11 123846534 123846888 -24936584 - THE1C LTR MaLR 0 375 1 4603 187 66 50 chr11 123847206 123847431 -24936041 - Charlie1 DNA MER1_type 0 2761 2541 2084 116 10 7 chr11 123847431 123847725 -24935747 - AluSg SINE Alu -15 295 1 4603 187 66 50 chr11 123847725 123848170 -24935302 - Charlie1 DNA MER1_type -220 2541 2105 2313 103 0 10 chr11 123848170 123848470 -24935002 + AluSx SINE Alu 1 297 -15 4603 187 66 50 chr11 123848470 123848786 -24934686 - Charlie1 DNA MER1_type -656 2105 1750 2136 115 7 7 chr11 123848786 123849082 -24934390 + AluSq SINE Alu 1 296 -17 4603 187 66 50 chr11 123849082 123849259 -24934213 - Charlie1 DNA MER1_type -1011 1750 1577 45366 40 2 1 chr11 123849284 123855422 -24928050 + L1PA7 LINE L1 1 6141 -13 357 238 143 16 chr11 123855530 123855656 -24927816 + MER96 DNA MER1_type? 12 153 -22 214 262 221 16 chr11 123856005 123856127 -24927345 - MIR3 SINE MIR -41 167 21 207 0 0 0 chr11 123856395 123856418 -24927054 + (TC)n Simple_repeat Simple_repeat 2 24 0 584 75 43 0 chr11 123857027 123857121 -24926351 - L1PB2 LINE L1 0 6151 6054 196 269 77 26 chr11 123857282 123857360 -24926112 + L2 LINE L2 2892 2973 -341 2577 106 80 5 chr11 123857360 123857758 -24925714 - MSTA LTR MaLR 0 428 1 331 241 24 12 chr11 123857786 123857869 -24925603 - L2 LINE L2 -3 3269 3186 183 333 130 10 chr11 123858032 123858239 -24925233 - L2 LINE L2 -337 2977 2746 305 296 74 9 chr11 123858417 123858525 -24924947 + L2 LINE L2 3157 3271 -1 326 355 25 39 chr11 123858616 123859056 -24924416 + L2 LINE L2 2625 3060 -212 247 311 23 11 chr11 123860154 123860263 -24923209 - MIR SINE MIR -83 125 40 1660 180 12 83 chr11 123860996 123861407 -24922065 + MLT1B LTR MaLR 1 382 -8 484 284 62 6 chr11 123861477 123861639 -24921833 + MIR SINE MIR 20 190 -72 519 242 70 32 chr11 123862866 123863052 -24920420 - MIR SINE MIR -43 219 27 22 0 0 0 chr11 123863387 123863409 -24920063 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 123864331 123864352 -24919120 + AT_rich Low_complexity Low_complexity 1 21 0 732 142 8 30 chr11 123864364 123864498 -24918974 + FLAM_C SINE Alu 1 131 -2 2226 120 0 0 chr11 123864662 123864971 -24918501 + AluSg SINE Alu 1 309 -1 417 242 81 0 chr11 123866102 123866226 -24917246 + L1MC5 LINE L1 7779 7912 -49 272 262 87 110 chr11 123866257 123866281 -24917191 + L2 LINE L2 2750 2773 -540 189 0 0 0 chr11 123866281 123866302 -24917170 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 272 262 87 110 chr11 123866302 123866845 -24916627 + L2 LINE L2 2773 3310 -3 267 31 0 0 chr11 123867512 123867544 -24915928 + (TG)n Simple_repeat Simple_repeat 2 33 0 372 43 0 0 chr11 123868491 123868537 -24914935 + MADE1 DNA Mariner 34 79 -1 1555 129 0 0 chr11 123869226 123869443 -24914029 - AluSg/x SINE Alu -12 300 84 840 225 53 11 chr11 123871006 123871269 -24912203 + L1ME3A LINE L1 5240 5510 -652 466 191 106 111 chr11 123871279 123871369 -24912103 + L1ME3A LINE L1 5765 5854 -316 2130 126 0 0 chr11 123871369 123871662 -24911810 + AluSx SINE Alu 1 293 -19 466 191 106 111 chr11 123871662 123871770 -24911702 + L1ME3A LINE L1 5854 5962 -208 1509 115 79 115 chr11 123872828 123873133 -24910339 + AluJo SINE Alu 1 294 -18 634 260 23 23 chr11 123876638 123876815 -24906657 + MER5B DNA MER1_type 1 177 -1 313 289 47 54 chr11 123877003 123877152 -24906320 + MER5B DNA MER1_type 19 166 -12 1675 175 21 0 chr11 123877154 123877434 -24906038 + AluJo SINE Alu 1 286 -26 241 98 20 20 chr11 123877435 123877486 -24905986 + (AAATG)n Simple_repeat Simple_repeat 3 53 0 1017 155 54 0 chr11 123877519 123877687 -24905785 + MER5A DNA MER1_type 1 177 -12 823 173 0 23 chr11 123877992 123878125 -24905347 - FLAM_C SINE Alu -2 131 2 212 289 40 0 chr11 123880222 123880298 -24903174 - MIR SINE MIR -1 261 183 207 0 0 0 chr11 123880498 123880521 -24902951 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2325 50 0 53 chr11 123880952 123881255 -24902217 + AluY SINE Alu 1 287 -24 1583 134 138 8 chr11 123881451 123881705 -24901767 - AluJo SINE Alu -15 287 1 258 207 17 17 chr11 123882037 123882095 -24901377 + MIR SINE MIR 87 144 -64 296 237 79 0 chr11 123882296 123882372 -24901100 + MIR SINE MIR 119 200 -62 1090 213 58 0 chr11 123882805 123883012 -24900460 + MER20 DNA MER1_type 1 219 0 396 292 18 9 chr11 123883087 123883200 -24900272 - MIR3 SINE MIR -32 176 63 945 280 137 47 chr11 123883290 123883827 -24899645 - L2 LINE L2 -36 3277 2695 607 153 0 0 chr11 123885935 123886020 -24897452 + FLAM_A SINE Alu 32 116 -26 201 39 0 0 chr11 123886024 123886050 -24897422 + (CA)n Simple_repeat Simple_repeat 2 27 0 638 202 31 8 chr11 123886117 123886246 -24897226 + Charlie5 DNA MER1_type 1 132 -2480 1341 170 37 71 chr11 123886250 123886544 -24896928 + L1MD2 LINE L1 6020 6303 -56 4458 169 57 48 chr11 123886558 123887144 -24896328 + Charlie5 DNA MER1_type 116 718 -1906 2520 76 0 0 chr11 123887144 123887448 -24896024 - AluSq SINE Alu -9 304 1 4458 169 57 48 chr11 123887448 123887872 -24895600 + Charlie5 DNA MER1_type 718 1136 -1488 2731 166 88 56 chr11 123888156 123888438 -24895034 + Charlie5 DNA MER1_type 1114 1386 -1238 2271 95 14 0 chr11 123888438 123888732 -24894740 + AluSg SINE Alu 1 298 -12 2731 166 88 56 chr11 123888732 123889106 -24894366 + Charlie5 DNA MER1_type 1386 1791 -833 225 0 0 0 chr11 123889107 123889132 -24894340 + (TG)n Simple_repeat Simple_repeat 2 26 0 420 141 128 13 chr11 123889160 123889238 -24894234 + MLT1B LTR MaLR 1 87 -303 14193 113 39 71 chr11 123889238 123889866 -24893606 + Tigger1 DNA MER2_type 1 648 -1770 2212 71 7 0 chr11 123889866 123890147 -24893325 - L1PA13 LINE L1 -2 6161 5879 14193 113 39 71 chr11 123890147 123890239 -24893233 + Tigger1 DNA MER2_type 648 741 -1677 2147 148 0 0 chr11 123890239 123890549 -24892923 - AluSx SINE Alu -1 311 2 14193 113 39 71 chr11 123890549 123891047 -24892425 + Tigger1 DNA MER2_type 741 1253 -1165 2170 121 0 0 chr11 123891047 123891336 -24892136 + AluSx SINE Alu 1 289 -23 14193 113 39 71 chr11 123891336 123891465 -24892007 + Tigger1 DNA MER2_type 1253 1385 -1033 1207 141 72 156 chr11 123891465 123891785 -24891687 - AluJo SINE Alu -9 293 1 14193 113 39 71 chr11 123891785 123892929 -24890543 + Tigger1 DNA MER2_type 1385 2415 -3 833 194 42 31 chr11 123892938 123893129 -24890343 + MLT1B LTR MaLR 92 284 -106 405 312 107 15 chr11 123893129 123893334 -24890138 + L3 LINE CR1 1134 1357 -220 388 358 88 10 chr11 123893440 123893633 -24889839 + L3 LINE CR1 1365 1572 -5 21 57 0 0 chr11 123894432 123894467 -24889005 + AT_rich Low_complexity Low_complexity 1 35 0 2004 107 50 7 chr11 123894748 123895028 -24888444 + AluSq SINE Alu 1 292 -21 1978 116 0 69 chr11 123895737 123896056 -24887416 + AluJo SINE Alu 1 297 -15 202 314 0 0 chr11 123896226 123896277 -24887195 + (CATATA)n Simple_repeat Simple_repeat 2 52 0 195 167 0 0 chr11 123897537 123897579 -24885893 + A-rich Low_complexity Low_complexity 1 42 0 336 217 51 102 chr11 123897898 123898055 -24885417 - L3 LINE CR1 -3 1574 1426 1822 162 0 17 chr11 123898124 123898421 -24885051 - AluJb SINE Alu -16 296 5 457 299 110 24 chr11 123898591 123898815 -24884657 + L2 LINE L2 1649 1899 -1415 207 0 0 0 chr11 123898815 123898838 -24884634 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 457 299 110 24 chr11 123898838 123898867 -24884605 + L2 LINE L2 1899 1924 -1390 3969 139 77 19 chr11 123898884 123899371 -24884101 - Tigger3(Golem) DNA MER2_type 0 3029 2572 2250 100 14 0 chr11 123899371 123899662 -24883810 - AluSx SINE Alu -17 295 1 3969 139 77 19 chr11 123899662 123899738 -24883734 - Tigger3(Golem) DNA MER2_type -457 2572 2502 7179 58 18 1 chr11 123899738 123901388 -24882084 - L1PA8A LINE L1 -7 6124 4460 3969 139 77 19 chr11 123901388 123901608 -24881864 - Tigger3(Golem) DNA MER2_type -527 2502 21 311 299 140 30 chr11 123901631 123901796 -24881676 + L2 LINE L2 1986 2131 -1183 1122 159 35 66 chr11 123901796 123902022 -24881450 + MER20 DNA MER1_type 1 219 0 311 299 140 30 chr11 123902022 123902127 -24881345 + L2 LINE L2 2131 2286 -1028 627 248 40 86 chr11 123902144 123902366 -24881106 + MLT1J2 LTR MaLR 18 229 -217 431 242 22 0 chr11 123902473 123902564 -24880908 - MER5A DNA MER1_type -77 112 20 1566 202 109 30 chr11 123902566 123902933 -24880539 + LTR40b LTR ERVL 3 398 -64 1705 175 31 3 chr11 123902935 123903227 -24880245 + AluJb SINE Alu 3 302 -10 2573 55 3 16 chr11 123903233 123903544 -24879928 + AluY SINE Alu 1 307 -4 31 0 0 0 chr11 123903544 123903575 -24879897 + AT_rich Low_complexity Low_complexity 1 31 0 2180 118 3 0 chr11 123903581 123903870 -24879602 + AluSx SINE Alu 1 290 -22 372 253 0 0 chr11 123903879 123903958 -24879514 + LTR40a LTR ERVL 441 519 0 467 308 122 50 chr11 123904122 123904768 -24878704 + L2 LINE L2 2285 2977 -337 468 310 186 7 chr11 123905037 123905311 -24878161 - L3 LINE CR1 -281 1296 974 357 172 0 16 chr11 123905399 123905463 -24878009 - AluS SINE Alu -245 63 1 321 153 17 0 chr11 123906033 123906092 -24877380 + L1MA5A LINE L1 6234 6293 -4 2483 88 0 0 chr11 123906926 123907234 -24876238 - AluSx SINE Alu -4 308 1 23 0 0 0 chr11 123907234 123907257 -24876215 + AT_rich Low_complexity Low_complexity 1 23 0 2266 105 0 10 chr11 123907498 123907804 -24875668 - AluSx SINE Alu -9 303 1 1187 123 0 6 chr11 123908198 123908368 -24875104 - AluSg/x SINE Alu -14 296 128 2140 62 35 48 chr11 123909219 123909509 -24873963 + AluSx SINE Alu 1 286 -26 212 83 36 119 chr11 123910708 123910792 -24872680 + (CATTA)n Simple_repeat Simple_repeat 4 80 0 1054 191 99 53 chr11 123911093 123911396 -24872076 + MER2 DNA MER2_type 1 317 -28 252 254 15 45 chr11 123911761 123911828 -24871644 - L2 LINE L2 -17 3296 3232 598 222 13 52 chr11 123911873 123912026 -24871446 - MER69A DNA AcHobo -1 176 30 2902 150 18 37 chr11 123912111 123912624 -24870848 + LTR54 LTR ERV1 8 510 0 524 235 24 18 chr11 123913259 123913425 -24870047 + L1MC5 LINE L1 7763 7929 -32 3314 197 30 77 chr11 123913569 123914586 -24868886 + LTR5 LTR ERVK 1 969 0 269 253 46 23 chr11 123914791 123914878 -24868594 + MIR SINE MIR 20 108 -154 180 273 23 0 chr11 123914919 123914963 -24868509 + L2 LINE L2 3210 3254 -18 24 32 0 0 chr11 123915138 123915169 -24868303 + AT_rich Low_complexity Low_complexity 1 31 0 232 229 30 61 chr11 123915175 123915306 -24868166 - L1ME4a LINE L1 -5 6116 5990 249 108 0 0 chr11 123915312 123915349 -24868123 + (CA)n Simple_repeat Simple_repeat 2 38 0 2075 127 0 10 chr11 123915370 123915669 -24867803 - AluSx SINE Alu -16 296 1 334 235 17 17 chr11 123915678 123915793 -24867679 - L1ME4a LINE L1 -209 5912 5798 471 260 83 6 chr11 123915807 123915976 -24867496 - L1ME4a LINE L1 -401 5720 5539 451 219 188 0 chr11 123917617 123917713 -24865759 + MER81 DNA DNA 1 114 0 1604 130 0 16 chr11 123917834 123918081 -24865391 - AluJo SINE Alu -3 309 67 298 180 0 0 chr11 123919105 123919155 -24864317 - L2 LINE L2 0 3313 3264 2214 99 20 0 chr11 123919217 123919509 -24863963 - AluSx SINE Alu -14 298 1 303 349 26 13 chr11 123919739 123919891 -24863581 - L2 LINE L2 -413 2901 2748 310 256 143 23 chr11 123920090 123920223 -24863249 - MIR SINE MIR -108 154 6 1834 94 143 0 chr11 123920283 123920549 -24862923 + AluSx SINE Alu 1 304 -8 853 150 8 0 chr11 123922466 123922593 -24860879 - AluJo SINE Alu -176 136 9 2262 90 3 17 chr11 123922809 123923109 -24860363 + AluSc SINE Alu 1 296 -13 2496 68 3 0 chr11 123923109 123923416 -24860056 + AluY SINE Alu 1 308 -3 985 178 0 12 chr11 123923538 123923707 -24859765 - FRAM SINE Alu -10 166 1 2217 87 14 0 chr11 123924760 123925047 -24858425 - AluSx SINE Alu -21 291 1 24 0 0 0 chr11 123925344 123925368 -24858104 + AT_rich Low_complexity Low_complexity 1 24 0 1075 158 12 0 chr11 123928346 123928511 -24854961 + AluJb SINE Alu 137 303 -9 485 258 39 56 chr11 123928523 123928701 -24854771 + MER5B DNA MER1_type 2 176 -2 2505 68 0 10 chr11 123928737 123929045 -24854427 + AluSc SINE Alu 1 305 -4 1101 237 45 57 chr11 123929050 123929229 -24854243 + L1ME3A LINE L1 3166 3346 -2800 2354 82 0 3 chr11 123929229 123929523 -24853949 + AluSc SINE Alu 3 295 -14 1101 237 45 57 chr11 123929523 123929921 -24853551 + L1ME3A LINE L1 3346 3736 -2410 1106 220 124 31 chr11 123929936 123930354 -24853118 + L1ME3A LINE L1 3786 4242 -1904 1134 254 163 40 chr11 123930364 123930674 -24852798 + L1ME3A LINE L1 4316 4586 -1584 1857 153 10 3 chr11 123930674 123930969 -24852503 + AluJb SINE Alu 1 297 -15 1134 254 163 40 chr11 123930969 123931081 -24852391 + L1ME3A LINE L1 4586 4683 -1487 2211 114 7 3 chr11 123931081 123931387 -24852085 + AluSx SINE Alu 1 307 -5 1134 254 163 40 chr11 123931387 123931561 -24851911 + L1ME3A LINE L1 4683 4834 -1336 2269 96 0 0 chr11 123931561 123931853 -24851619 + AluSx SINE Alu 1 292 -20 1134 254 163 40 chr11 123931853 123932564 -24850908 + L1ME3A LINE L1 4834 5837 -333 227 73 49 24 chr11 123932887 123932919 -24850553 - MER58 DNA MER1_type -106 109 74 2136 139 0 0 chr11 123932919 123933222 -24850250 + AluJo SINE Alu 1 303 -9 313 299 0 23 chr11 123933524 123933611 -24849861 + MIR SINE MIR 18 102 -160 1307 211 35 4 chr11 123933852 123934080 -24849392 - MER8 DNA MER2_type -3 236 2 234 0 0 0 chr11 123934581 123934607 -24848865 + (T)n Simple_repeat Simple_repeat 1 26 0 1857 151 16 13 chr11 123934647 123934951 -24848521 + AluSx SINE Alu 1 305 -7 492 99 297 0 chr11 123936275 123936392 -24847080 + MER30 DNA MER1_type 1 171 -59 2533 48 0 0 chr11 123936521 123936815 -24846657 - AluY SINE Alu -17 294 1 1653 171 66 0 chr11 123936815 123937101 -24846371 - AluJb SINE Alu -7 305 1 2099 129 0 3 chr11 123937352 123937655 -24845817 - AluSx SINE Alu -10 302 1 753 213 35 17 chr11 123938264 123938438 -24845034 - MER5B DNA MER1_type -1 177 1 565 281 54 6 chr11 123938494 123938661 -24844811 - MER5B DNA MER1_type 0 178 4 215 310 177 0 chr11 123939282 123939395 -24844077 - L2 LINE L2 -3 3310 3178 241 333 118 7 chr11 123939924 123940059 -24843413 + MIR3 SINE MIR 56 205 -3 2161 138 0 0 chr11 123941771 123942068 -24841404 - AluJo SINE Alu -15 297 1 1732 146 19 49 chr11 123942442 123942750 -24840722 - AluJo SINE Alu -13 299 1 975 176 75 0 chr11 123942751 123942910 -24840562 - FAM SINE Alu -4 171 1 2311 94 0 3 chr11 123943588 123943886 -24839586 - AluSx SINE Alu -15 297 1 1215 159 4 68 chr11 123945901 123946153 -24837319 - MER46A DNA MER2_type 0 236 1 312 189 0 0 chr11 123946182 123946235 -24837237 + L2 LINE L2 3261 3313 0 2335 98 3 10 chr11 123946262 123946569 -24836903 + AluSx SINE Alu 1 305 -7 2212 110 3 0 chr11 123947193 123947484 -24835988 - AluSx SINE Alu -18 294 3 229 325 111 0 chr11 123947627 123947744 -24835728 + MIR SINE MIR 25 154 -108 1992 133 0 0 chr11 123947934 123948220 -24835252 + AluSx SINE Alu 18 303 -9 25 75 0 0 chr11 123948659 123948712 -24834760 + AT_rich Low_complexity Low_complexity 1 53 0 185 319 0 28 chr11 123949187 123949259 -24834213 + MIR3 SINE MIR 118 187 -21 1958 144 0 7 chr11 123951278 123951562 -24831910 + AluSx SINE Alu 1 282 -30 424 351 48 9 chr11 123951995 123952223 -24831249 - MIR SINE MIR -13 249 13 2182 91 7 0 chr11 123952746 123953054 -24830418 + AluSc SINE Alu 2 311 0 26 93 0 0 chr11 123953261 123953336 -24830136 + AT_rich Low_complexity Low_complexity 1 75 0 2343 63 26 7 chr11 123954650 123954953 -24828519 - AluY SINE Alu -1 310 2 1968 151 0 19 chr11 123955086 123955404 -24828068 + AluJb SINE Alu 1 312 0 2244 131 0 0 chr11 123955616 123955922 -24827550 - AluSx SINE Alu -6 306 1 251 234 81 86 chr11 123955926 123956135 -24827337 - L1ME4a LINE L1 0 6121 5914 1816 100 8 4 chr11 123956233 123956484 -24826988 - AluSq SINE Alu -17 296 45 878 68 83 30 chr11 123956502 123956634 -24826838 - MER85 DNA T2_type 0 139 1 420 181 48 0 chr11 123956903 123956986 -24826486 + MER94 DNA DNA 7 93 -41 2150 104 3 3 chr11 123958679 123958967 -24824505 + AluSg SINE Alu 1 288 -22 369 0 0 0 chr11 123958968 123959009 -24824463 + (GA)n Simple_repeat Simple_repeat 2 42 0 667 220 0 0 chr11 123959010 123959119 -24824353 - FLAM_A SINE Alu -32 110 2 21 0 0 0 chr11 123959135 123959156 -24824316 + AT_rich Low_complexity Low_complexity 1 21 0 195 204 102 0 chr11 123959873 123959922 -24823550 + MIR SINE MIR 68 121 -87 3025 202 74 65 chr11 123960248 123960839 -24822633 + L1ME1 LINE L1 3941 4525 -1621 2065 125 3 3 chr11 123960839 123961126 -24822346 - AluSx SINE Alu -25 287 1 3025 202 74 65 chr11 123961126 123961156 -24822316 + L1ME1 LINE L1 4525 4553 -1593 2412 79 3 3 chr11 123961156 123961459 -24822013 + AluSp SINE Alu 1 303 -10 3025 202 74 65 chr11 123961459 123961781 -24821691 + L1ME1 LINE L1 4553 4894 -1252 2609 234 42 12 chr11 123961779 123962453 -24821019 + L1ME1 LINE L1 5410 6103 -63 * 2329 95 0 0 chr11 123962521 123962817 -24820655 + AluSg SINE Alu 13 308 -2 1504 147 155 0 chr11 123962849 123963114 -24820358 - AluJb SINE Alu -6 306 1 2512 69 3 0 chr11 123963145 123963448 -24820024 + AluSp SINE Alu 1 304 -9 180 282 204 56 chr11 123963529 123963671 -24819801 + MER5A DNA MER1_type 9 171 -18 21 82 0 0 chr11 123965228 123965277 -24818195 + AT_rich Low_complexity Low_complexity 1 49 0 1753 169 14 3 chr11 123966057 123966352 -24817120 + AluJo SINE Alu 5 302 -10 940 184 107 86 chr11 123966398 123966817 -24816655 + L1MC5 LINE L1 7272 7699 -262 345 331 66 15 chr11 123967159 123967295 -24816177 - MIR SINE MIR -112 150 8 423 307 71 0 chr11 123967596 123967723 -24815749 - L2 LINE L2 -14 3258 3123 2250 123 3 0 chr11 123968600 123968910 -24814562 - AluSx SINE Alu -1 311 1 1136 153 0 16 chr11 123969261 123969444 -24814028 - AluJo SINE Alu -4 308 129 247 245 154 14 chr11 123970928 123971071 -24812401 + L1ME3A LINE L1 5599 5761 -360 851 146 0 0 chr11 123971096 123971219 -24812253 - AluJo SINE Alu -189 123 1 296 254 75 35 chr11 123971280 123971453 -24812019 + L1ME3A LINE L1 5769 5948 -222 2279 91 16 0 chr11 123972300 123972608 -24810864 + AluSp SINE Alu 1 313 0 696 257 123 68 chr11 123973083 123973832 -24809640 + L2 LINE L2 2491 3308 -5 806 269 162 27 chr11 123974791 123975357 -24808115 + L2 LINE L2 2645 3281 -32 252 229 255 25 chr11 123975358 123975515 -24807957 - L2 LINE L2 -817 2497 2305 437 261 22 22 chr11 123975517 123975655 -24807817 + L2 LINE L2 2172 2309 -1005 200 216 0 0 chr11 123975764 123975801 -24807671 + L2 LINE L2 2323 2359 -955 1797 121 0 0 chr11 123975808 123976047 -24807425 + AluSx SINE Alu 5 243 -69 31 0 0 0 chr11 123976067 123976098 -24807374 + AT_rich Low_complexity Low_complexity 1 31 0 1003 82 52 0 chr11 123976109 123976243 -24807229 + AluSq/x SINE Alu 2 142 -171 1970 118 40 0 chr11 123976244 123976540 -24806932 + AluSg SINE Alu 1 308 -2 371 350 22 50 chr11 123976569 123976846 -24806626 + L2 LINE L2 2388 2656 -658 1077 279 53 42 chr11 123978724 123978805 -24804667 + L1MB3 LINE L1 3723 3802 -2344 2494 71 0 0 chr11 123978805 123979101 -24804371 + AluY SINE Alu 1 296 -15 1077 279 53 42 chr11 123979101 123979454 -24804018 + L1MB3 LINE L1 3802 4167 -1979 2123 118 0 4 chr11 123979454 123979734 -24803738 + AluSx SINE Alu 5 283 -29 1077 279 53 42 chr11 123979734 123979824 -24803648 + L1MB3 LINE L1 4167 4254 -1892 274 143 41 0 chr11 123979824 123979873 -24803599 + MER66B LTR ERV1 295 345 -141 2194 128 3 0 chr11 123979891 123980203 -24803269 + AluSp SINE Alu 1 313 0 3399 190 76 42 chr11 123980228 123980660 -24802812 + L1MB3 LINE L1 4741 5157 -1026 2127 101 13 29 chr11 123980660 123980966 -24802506 + AluSg SINE Alu 1 301 -9 3399 190 76 42 chr11 123980966 123981324 -24802148 + L1MB3 LINE L1 5157 5501 -682 1822 149 9 47 chr11 123981324 123981646 -24801826 + AluJb SINE Alu 1 310 -2 3399 190 76 42 chr11 123981646 123981658 -24801814 + L1MB3 LINE L1 5501 5511 -672 1959 142 10 6 chr11 123981658 123981969 -24801503 + AluSx SINE Alu 1 312 0 3399 190 76 42 chr11 123981969 123982088 -24801384 + L1MB3 LINE L1 5511 5624 -559 1760 175 7 3 chr11 123982088 123982374 -24801098 - AluJb SINE Alu -23 289 3 3399 190 76 42 chr11 123982374 123982817 -24800655 + L1MB3 LINE L1 5624 6156 -27 1164 141 11 12 chr11 123982834 123983113 -24800359 + L1MB2 LINE L1 5814 6126 -45 2187 110 0 13 chr11 123983210 123983509 -24799963 + AluSx SINE Alu 1 295 -17 269 202 12 83 chr11 123983553 123983637 -24799835 + L1MC5 LINE L1 7151 7228 -733 516 243 64 91 chr11 123983809 123984229 -24799243 + L1MC5 LINE L1 7342 7750 -211 * 546 177 1 10 chr11 123984200 123984330 -24799142 + L1M4 LINE L1 5586 5717 -451 8578 197 72 54 chr11 123984331 123986458 -24797014 + MER21-int LTR ERV1 919 3085 -1106 677 191 56 8 chr11 123986456 123986582 -24796890 - MER21-int LTR ERV1 -3013 1178 1047 * 802 257 72 41 chr11 123986631 123986993 -24796479 + L1ME3A LINE L1 5513 5885 -285 383 250 0 0 chr11 123986999 123987087 -24796385 + L1ME LINE L1 5670 5757 -405 1850 255 122 33 chr11 123987126 123988019 -24795453 + L2 LINE L2 2038 3121 -192 2081 104 42 3 chr11 123988019 123988307 -24795165 + AluSx SINE Alu 1 299 -13 1850 255 122 33 chr11 123988307 123988519 -24794953 + L2 LINE L2 3121 3313 0 2509 64 0 7 chr11 123988536 123988834 -24794638 - AluY SINE Alu -15 296 1 233 190 17 17 chr11 123988844 123988902 -24794570 + MIR SINE MIR 205 262 0 1692 123 48 52 chr11 123989525 123989834 -24793638 + AluJb SINE Alu 1 308 -4 615 235 111 74 chr11 123989870 123990098 -24793374 - L1MC5 LINE L1 -33 7928 7710 2300 109 0 13 chr11 123990098 123990410 -24793062 + AluSx SINE Alu 1 308 -4 615 235 111 74 chr11 123990410 123990666 -24792806 - L1MC5 LINE L1 -251 7710 7426 1926 99 0 8 chr11 123990956 123991219 -24792253 - AluSg SINE Alu -49 261 1 2219 98 20 3 chr11 123992149 123992445 -24791027 + AluSp SINE Alu 1 301 -12 466 229 112 50 chr11 123992940 123993119 -24790353 - MIR SINE MIR 0 262 73 1181 123 0 0 chr11 123993214 123993406 -24790066 - AluSg/x SINE Alu 0 313 122 2372 220 100 35 chr11 123993538 123994216 -24789256 - HsTC2c DNA MER2_type -4 725 4 1905 159 0 17 chr11 123994378 123994680 -24788792 - AluSx SINE Alu -15 297 1 2144 116 10 7 chr11 123995120 123995423 -24788049 - AluSx SINE Alu -8 304 1 711 192 15 8 chr11 123995560 123995690 -24787782 - FLAM_A SINE Alu -2 131 1 639 146 29 0 chr11 123995860 123995963 -24787509 + U6 snRNA snRNA 1 106 -1 33 0 0 0 chr11 123996112 123996145 -24787327 + AT_rich Low_complexity Low_complexity 1 33 0 240 100 0 0 chr11 123996957 123996997 -24786475 + (A)n Simple_repeat Simple_repeat 1 40 0 2077 122 0 30 chr11 123997045 123997348 -24786124 + AluSg SINE Alu 1 294 -16 2196 86 3 23 chr11 123997352 123997655 -24785817 + AluY SINE Alu 1 297 -14 2354 96 0 0 chr11 123998581 123998874 -24784598 + AluSq SINE Alu 2 294 -19 220 327 44 18 chr11 123998879 123998992 -24784480 - L2 LINE L2 -474 2840 2725 4358 193 24 104 chr11 123999254 123999879 -24783593 + L1MB5 LINE L1 3841 4515 -1631 1985 145 7 0 chr11 123999879 124000175 -24783297 + AluJo SINE Alu 1 298 -14 2638 31 0 0 chr11 124000178 124000470 -24783002 + AluY SINE Alu 1 292 -19 2270 103 0 7 chr11 124000472 124000773 -24782699 + AluSx SINE Alu 2 300 -12 4358 193 24 104 chr11 124000773 124000836 -24782636 + L1MB5 LINE L1 4518 4584 -1562 2108 194 28 53 chr11 124000836 124001367 -24782105 - MLT2B1 LTR ERVL 0 520 3 4358 193 24 104 chr11 124001367 124001381 -24782091 + L1MB5 LINE L1 4584 4598 -1548 1243 191 88 26 chr11 124001381 124001653 -24781819 - AluJb SINE Alu -23 289 1 4358 193 24 104 chr11 124001653 124001774 -24781698 + L1MB5 LINE L1 4598 4727 -1419 372 111 19 0 chr11 124001774 124001828 -24781644 - U7 snRNA snRNA -8 55 1 4358 193 24 104 chr11 124001828 124002338 -24781134 + L1MB5 LINE L1 4727 5125 -1021 366 197 0 53 chr11 124002339 124002415 -24781057 + AluJo SINE Alu 120 191 -111 2065 130 20 0 chr11 124002530 124002830 -24780642 + AluSx SINE Alu 1 306 -6 4139 183 29 49 chr11 124002844 124003786 -24779686 + L1MB5 LINE L1 5182 6114 -60 1771 116 4 4 chr11 124003786 124004027 -24779445 - AluSq SINE Alu -18 295 55 4139 183 29 49 chr11 124004027 124004087 -24779385 + L1MB5 LINE L1 6114 6174 0 901 206 0 6 chr11 124004097 124004267 -24779205 + FAM SINE Alu 2 170 -5 465 158 0 0 chr11 124004304 124004386 -24779086 + GA-rich Low_complexity Low_complexity 2 83 0 1896 148 0 16 chr11 124005182 124005487 -24777985 + AluJo SINE Alu 13 312 0 1459 186 38 34 chr11 124005544 124005682 -24777790 + AluJb SINE Alu 1 137 -175 2070 111 24 7 chr11 124005682 124005980 -24777492 + AluSx SINE Alu 1 303 -9 1459 186 38 34 chr11 124005980 124006132 -24777340 + AluJb SINE Alu 137 292 -20 276 269 139 9 chr11 124006140 124006248 -24777224 + MIR SINE MIR 119 240 -22 2247 93 3 0 chr11 124006426 124006715 -24776757 + AluSp SINE Alu 15 304 -9 1867 159 0 7 chr11 124006776 124007059 -24776413 + AluJo SINE Alu 1 281 -31 461 238 59 0 chr11 124007624 124007725 -24775747 + MER63 DNA MER1_type 681 787 -273 244 203 68 0 chr11 124007772 124007831 -24775641 - MER5A DNA MER1_type -118 71 9 822 212 52 24 chr11 124007924 124008136 -24775336 - MER20 DNA MER1_type 0 219 2 410 277 178 15 chr11 124008440 124008642 -24774830 + MIR SINE MIR 28 262 0 2093 59 0 4 chr11 124008779 124009033 -24774439 + AluY SINE Alu 44 296 -15 2496 63 0 3 chr11 124010395 124010695 -24772777 + AluSc SINE Alu 1 299 -10 1883 100 97 0 chr11 124010704 124010983 -24772489 + AluSx SINE Alu 1 306 -6 216 119 48 0 chr11 124012107 124012149 -24771323 + C-rich Low_complexity Low_complexity 4 47 0 1744 97 153 4 chr11 124012849 124013117 -24770355 - AluSx SINE Alu -4 308 1 1895 170 10 7 chr11 124013764 124014070 -24769402 - AluJo SINE Alu -5 307 1 1354 151 186 50 chr11 124014235 124014612 -24768860 - MSTA LTR MaLR 0 428 1 1989 98 29 67 chr11 124014628 124014944 -24768528 - AluSg SINE Alu -6 304 1 701 192 0 0 chr11 124014990 124015110 -24768362 + AluJb SINE Alu 14 133 -179 2644 75 3 25 chr11 124015121 124015483 -24767989 - THE1A LTR MaLR -1 354 1 10419 103 13 8 chr11 124015483 124016569 -24766903 - THE1A-int LTR MaLR 0 1580 484 2302 102 0 22 chr11 124016569 124016884 -24766588 - AluSc SINE Alu -1 308 1 10419 103 13 8 chr11 124016884 124017219 -24766253 - THE1A-int LTR MaLR -1096 484 152 1133 164 0 0 chr11 124017251 124017428 -24766044 + AluJb SINE Alu 128 304 -8 2232 83 55 3 chr11 124018004 124018293 -24765179 - AluSg SINE Alu -6 304 1 2399 84 3 7 chr11 124018900 124019210 -24764262 + AluSc SINE Alu 1 309 0 868 195 26 102 chr11 124019231 124019379 -24764093 + MER8 DNA MER2_type 14 172 -67 180 0 0 0 chr11 124019379 124019399 -24764073 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 889 196 0 0 chr11 124019400 124019548 -24763924 - FRAM SINE Alu -18 148 1 868 195 26 102 chr11 124019548 124019623 -24763849 + MER8 DNA MER2_type 171 222 -17 1646 180 3 7 chr11 124019663 124019947 -24763525 + AluJo SINE Alu 12 294 -18 2063 107 3 35 chr11 124020004 124020314 -24763158 - AluSq SINE Alu -13 300 1 636 226 0 0 chr11 124020327 124020464 -24763008 + FRAM SINE Alu 35 171 -5 546 250 51 51 chr11 124020477 124020653 -24762819 - MIR SINE MIR 0 262 87 1961 136 0 0 chr11 124020804 124021076 -24762396 + AluSx SINE Alu 6 277 -35 705 161 9 0 chr11 124021148 124021260 -24762212 + MER57A LTR ERV1 9 121 -282 27 0 0 0 chr11 124021298 124021325 -24762147 + GC_rich Low_complexity Low_complexity 1 27 0 1984 135 0 3 chr11 124021443 124021725 -24761747 - AluSg SINE Alu -29 281 1 484 198 0 47 chr11 124021807 124021913 -24761559 + AluJ/FLAM SINE Alu 1 101 -211 2121 104 6 61 chr11 124021940 124022268 -24761204 - AluSq SINE Alu -3 310 1 1222 225 70 47 chr11 124022315 124022411 -24761061 + MSTD LTR MaLR 1 93 -303 1805 121 19 11 chr11 124022411 124022675 -24760797 + AluSx SINE Alu 1 266 -46 1222 225 70 47 chr11 124022675 124022965 -24760507 + MSTD LTR MaLR 93 396 0 22 56 0 0 chr11 124023168 124023204 -24760268 + AT_rich Low_complexity Low_complexity 1 36 0 2463 70 7 0 chr11 124023212 124023512 -24759960 + AluY SINE Alu 1 302 -9 332 281 39 13 chr11 124024345 124024498 -24758974 + MER21-int LTR ERV1 1481 1637 -2554 5580 182 26 23 chr11 124024595 124025941 -24757531 + MER21-int LTR ERV1 1660 3085 -1106 677 191 56 8 chr11 124025939 124026065 -24757407 - MER21-int LTR ERV1 -3013 1178 1047 * 802 257 72 41 chr11 124026114 124026476 -24756996 + L1ME3A LINE L1 5513 5885 -285 383 250 0 0 chr11 124026482 124026570 -24756902 + L1ME LINE L1 5670 5757 -405 1124 251 51 47 chr11 124026609 124027139 -24756333 + L2 LINE L2 2038 2569 -745 1665 194 3 0 chr11 124027396 124027700 -24755772 - AluSx SINE Alu -7 305 1 320 185 19 0 chr11 124027650 124027704 -24755768 - AluSg/x SINE Alu -116 186 132 1230 153 0 53 chr11 124027718 124027946 -24755526 - AluSg/x SINE Alu -15 297 82 1861 94 8 12 chr11 124027951 124028205 -24755267 - AluSx SINE Alu -15 297 45 828 68 83 30 chr11 124028223 124028355 -24755117 - MER85 DNA T2_type 0 139 1 340 214 57 0 chr11 124028624 124028694 -24754778 + MER94 DNA DNA 7 80 -54 1982 103 4 0 chr11 124030414 124030686 -24752786 + AluSg SINE Alu 15 287 -23 369 0 0 0 chr11 124030689 124030730 -24752742 + (GA)n Simple_repeat Simple_repeat 2 42 0 625 220 0 0 chr11 124030731 124030840 -24752632 - FLAM_A SINE Alu -32 110 2 21 0 0 0 chr11 124030856 124030877 -24752595 + AT_rich Low_complexity Low_complexity 1 21 0 199 308 149 9 chr11 124031595 124031702 -24751770 + MIR3 SINE MIR 68 189 -19 803 300 45 33 chr11 124031970 124032397 -24751075 + L1M4 LINE L1 3941 4372 -1774 368 191 28 13 chr11 124032721 124032856 -24750616 - MSTC LTR MaLR -148 280 63 1924 127 3 3 chr11 124032885 124033176 -24750296 + AluSx SINE Alu 1 291 -21 2121 121 0 0 chr11 124033189 124033487 -24749985 + AluSx SINE Alu 1 298 -14 300 289 106 10 chr11 124033649 124033753 -24749719 - MER5B DNA MER1_type -1 177 64 2339 60 3 13 chr11 124033753 124034067 -24749405 + AluY SINE Alu 1 311 0 797 156 0 30 chr11 124034075 124034210 -24749262 + AluJo SINE Alu 6 136 -176 1685 154 61 0 chr11 124034473 124034752 -24748720 - AluSg SINE Alu -14 296 1 212 0 36 0 chr11 124034768 124034796 -24748676 + (TTTA)n Simple_repeat Simple_repeat 1 29 0 1537 114 0 9 chr11 124034798 124035017 -24748455 - AluSq SINE Alu -32 281 65 36 23 0 0 chr11 124035072 124035115 -24748357 + AT_rich Low_complexity Low_complexity 1 43 0 1952 118 0 3 chr11 124035115 124035403 -24748069 - AluSx SINE Alu -25 287 1 2116 131 0 0 chr11 124036097 124036409 -24747063 + AluSx SINE Alu 1 312 0 813 123 8 15 chr11 124036414 124036544 -24746928 - MER57A LTR ERV1 -162 241 113 1121 245 7 3 chr11 124036549 124036835 -24746637 + AluSp SINE Alu 1 287 -16 432 268 197 16 chr11 124037075 124037258 -24746214 - MIR SINE MIR -19 243 28 194 328 55 16 chr11 124037294 124037422 -24746050 + L2 LINE L2 1274 1406 -1908 808 217 52 24 chr11 124037562 124037774 -24745698 + MER20 DNA MER1_type 2 219 0 271 203 68 0 chr11 124037867 124037926 -24745546 + MER5A DNA MER1_type 9 71 -118 461 238 59 0 chr11 124037973 124038074 -24745398 - MER63 DNA MER1_type -273 788 682 1706 165 0 0 chr11 124038649 124038922 -24744550 - AluJo SINE Alu -39 273 1 2312 73 7 0 chr11 124038983 124039285 -24744187 - AluSq SINE Alu -9 304 1 3394 73 11 9 chr11 124039306 124039758 -24743714 - L1PA10 LINE L1 -8 6160 5708 1271 123 57 0 chr11 124039759 124039971 -24743501 - L1MB3 LINE L1 -143 6040 5817 2143 93 3 0 chr11 124039973 124040262 -24743210 - AluSx SINE Alu -22 290 1 649 245 11 70 chr11 124040439 124040811 -24742661 + L1MEc LINE L1 1875 2224 -4172 1923 137 3 3 chr11 124040852 124041145 -24742327 + AluSx SINE Alu 1 293 -19 1299 224 61 7 chr11 124041183 124041478 -24741994 + L1MD2 LINE L1 5787 6097 -262 227 331 0 14 chr11 124041730 124041872 -24741600 + C-rich Low_complexity Low_complexity 2 141 0 272 251 3 1 chr11 124042472 124042564 -24740908 + L1MC4 LINE L1 7690 8042 0 1514 195 7 10 chr11 124043256 124043558 -24739914 - AluJb SINE Alu -11 301 1 1717 127 73 60 chr11 124043662 124043980 -24739492 + THE1C LTR MaLR 1 326 -49 1861 86 8 0 chr11 124043980 124044236 -24739236 + AluSq SINE Alu 56 313 0 1717 127 73 60 chr11 124044236 124044287 -24739185 + THE1C LTR MaLR 326 375 0 1999 113 32 0 chr11 124044445 124044729 -24738743 - AluSx SINE Alu -15 297 5 344 350 7 28 chr11 124045591 124045734 -24737738 + MIR SINE MIR 5 144 -118 800 166 50 2 chr11 124045750 124045915 -24737557 - MLT1E3 LTR MaLR -4 620 471 227 279 151 0 chr11 124045896 124045982 -24737490 - MER63A DNA MER1_type -7 203 105 * 1462 197 19 10 chr11 124045982 124046291 -24737181 + AluJb SINE Alu 1 312 0 532 164 9 9 chr11 124046294 124046410 -24737062 + GA-rich Low_complexity Low_complexity 2 117 0 243 290 81 40 chr11 124046588 124046712 -24736760 + L2 LINE L2 3169 3297 -16 251 203 45 40 chr11 124047020 124047197 -24736275 + (CGCGG)n Simple_repeat Simple_repeat 2 179 0 21 0 0 0 chr11 124047238 124047259 -24736213 + GC_rich Low_complexity Low_complexity 1 21 0 228 216 27 27 chr11 124047498 124047609 -24735863 + (CGCGG)n Simple_repeat Simple_repeat 1 111 0 804 247 163 36 chr11 124047739 124048095 -24735377 + L2 LINE L2 2881 3281 -32 268 229 255 25 chr11 124048096 124048253 -24735219 - L2 LINE L2 -817 2497 2305 445 261 22 22 chr11 124048255 124048393 -24735079 + L2 LINE L2 2172 2309 -1005 208 216 0 0 chr11 124048502 124048539 -24734933 + L2 LINE L2 2323 2359 -955 1707 121 0 0 chr11 124048546 124048785 -24734687 + AluSx SINE Alu 5 243 -69 31 0 0 0 chr11 124048805 124048836 -24734636 + AT_rich Low_complexity Low_complexity 1 31 0 960 82 52 0 chr11 124048847 124048981 -24734491 + AluSq/x SINE Alu 2 142 -170 1870 118 40 0 chr11 124048982 124049278 -24734194 + AluSg SINE Alu 1 308 -2 355 360 27 47 chr11 124049307 124049604 -24733868 + L2 LINE L2 2388 2678 -636 1014 285 53 44 chr11 124051463 124051544 -24731928 + L1M4 LINE L1 3723 3802 -2344 2546 30 0 0 chr11 124051544 124051840 -24731632 + AluYa5 SINE Alu 1 296 -15 1014 285 53 44 chr11 124051840 124052193 -24731279 + L1M4 LINE L1 3802 4165 -1981 1998 118 0 4 chr11 124052193 124052473 -24730999 + AluSx SINE Alu 5 283 -29 1014 285 53 44 chr11 124052473 124052564 -24730908 + L1M4 LINE L1 4165 4254 -1892 279 143 41 0 chr11 124052564 124052613 -24730859 + MER66B LTR ERV1 295 345 -141 2068 128 3 0 chr11 124052631 124052943 -24730529 + AluSp SINE Alu 1 313 0 1749 208 72 0 chr11 124052968 124053400 -24730072 + L1M4 LINE L1 4741 5203 -943 2184 109 0 3 chr11 124053400 124053712 -24729760 + AluY SINE Alu 1 311 0 813 123 8 15 chr11 124053717 124053847 -24729625 - MER57A LTR ERV1 -162 241 113 529 202 18 0 chr11 124053853 124053962 -24729510 + AluSq/x SINE Alu 2 112 -200 21 0 0 0 chr11 124054287 124054308 -24729164 + GC_rich Low_complexity Low_complexity 1 21 0 57 75 0 0 chr11 124054362 124054482 -24728990 + GC_rich Low_complexity Low_complexity 1 120 0 721 257 123 68 chr11 124056124 124056873 -24726599 - L2 LINE L2 -5 3308 2491 2173 91 16 0 chr11 124057347 124057655 -24725817 - AluSp SINE Alu 0 313 1 253 254 75 35 chr11 124058502 124058675 -24724797 - L1ME3A LINE L1 -222 5948 5769 807 146 0 0 chr11 124058736 124058859 -24724613 + AluJo SINE Alu 1 123 -189 384 245 154 14 chr11 124058884 124059027 -24724445 - L1ME3A LINE L1 -360 5761 5599 1081 153 0 16 chr11 124060511 124060694 -24722778 + AluJo SINE Alu 129 308 -4 1417 113 5 5 chr11 124061068 124061271 -24722201 + AluSx SINE Alu 27 229 -83 800 173 43 7 chr11 124061281 124061420 -24722052 - AluJo SINE Alu -167 145 2 362 306 37 94 chr11 124061935 124062180 -24721292 - MIR SINE MIR -6 256 26 262 202 12 83 chr11 124063052 124063136 -24720336 - L1MC5 LINE L1 -733 7228 7151 2013 117 0 13 chr11 124063180 124063479 -24719993 - AluSx SINE Alu -17 295 1 490 183 19 0 chr11 124063576 124063680 -24719792 - L1MB2 LINE L1 -45 6126 6021 * 1152 124 8 17 chr11 124063656 124063855 -24719617 - L1MB2 LINE L1 -181 5990 5814 3153 198 80 55 chr11 124063872 124064315 -24719157 - L1MB3 LINE L1 -27 6156 5726 1646 175 7 3 chr11 124064315 124064601 -24718871 + AluJb SINE Alu 3 289 -23 3153 198 80 55 chr11 124064601 124064720 -24718752 - L1MB3 LINE L1 -457 5726 5611 1839 142 10 6 chr11 124064720 124065031 -24718441 - AluSx SINE Alu 0 312 1 3153 198 80 55 chr11 124065031 124065043 -24718429 - L1MB3 LINE L1 -572 5611 5601 1699 152 9 47 chr11 124065043 124065365 -24718107 - AluJb SINE Alu -2 310 1 3153 198 80 55 chr11 124065365 124065737 -24717735 - L1MB3 LINE L1 -582 5601 5186 1882 126 11 3 chr11 124065741 124066026 -24717446 - AluSq SINE Alu -26 287 1 2030 121 7 0 chr11 124066051 124066356 -24717116 - AluSg SINE Alu -3 307 1 1244 81 0 0 chr11 124066389 124066549 -24716923 + AluSc SINE Alu 135 294 -15 205 324 57 19 chr11 124066943 124067048 -24716424 + L2 LINE L2 2913 3021 -251 1514 189 21 7 chr11 124067128 124067435 -24716037 - AluJb SINE Alu 0 312 15 2239 71 0 14 chr11 124067473 124067769 -24715703 - AluYa5 SINE Alu -18 293 2 1547 174 0 32 chr11 124069248 124069530 -24713942 + AluJo SINE Alu 1 273 -39 2145 131 0 0 chr11 124069701 124070013 -24713459 - AluSx SINE Alu 0 312 1 397 273 139 67 chr11 124070768 124070977 -24712495 + MIR SINE MIR 20 243 -19 220 333 0 29 chr11 124071052 124071121 -24712351 - L2 LINE L2 0 3313 3247 800 255 96 46 chr11 124071400 124071836 -24711636 + LTR33 LTR ERVL 46 503 -18 960 59 0 0 chr11 124071914 124072032 -24711440 + AluSq/x SINE Alu 1 118 -194 644 52 0 0 chr11 124072032 124072109 -24711363 + AluY SINE Alu 212 288 -23 1122 97 34 11 chr11 124072109 124072284 -24711188 + AluSp SINE Alu 103 281 -32 272 322 91 14 chr11 124072305 124072448 -24711024 + MIR SINE MIR 1 154 -108 284 257 10 30 chr11 124072886 124072987 -24710485 + HERV16 LTR ERVL 261 359 -4637 1984 129 3 0 chr11 124072990 124073277 -24710195 + AluSc SINE Alu 1 288 -21 1913 119 48 0 chr11 124073281 124073575 -24709897 + AluSx SINE Alu 1 308 -4 1053 168 0 0 chr11 124073575 124073754 -24709718 + AluSg/x SINE Alu 132 310 0 2019 127 0 13 chr11 124073795 124074109 -24709363 - AluSg SINE Alu 0 310 1 490 198 0 47 chr11 124074191 124074297 -24709175 + AluJ/FLAM SINE Alu 1 101 -211 1997 104 6 61 chr11 124074324 124074652 -24708820 - AluSq SINE Alu -3 310 1 385 146 62 2 chr11 124074699 124074772 -24708700 + MSTD LTR MaLR 1 77 -349 1376 178 23 15 chr11 124074795 124075059 -24708413 + AluJb SINE Alu 1 266 -46 1207 203 83 28 chr11 124075059 124075349 -24708123 + MSTD LTR MaLR 91 396 0 22 56 0 0 chr11 124075552 124075588 -24707884 + AT_rich Low_complexity Low_complexity 1 36 0 2471 64 0 0 chr11 124075596 124075907 -24707565 + AluY SINE Alu 1 311 0 29 28 0 0 chr11 124076289 124076325 -24707147 + AT_rich Low_complexity Low_complexity 1 36 0 272 308 19 19 chr11 124076377 124076481 -24706991 - LTR16C LTR ERVL 0 491 388 1526 148 3 118 chr11 124076834 124076964 -24706508 + AluSx SINE Alu 1 144 -158 1940 144 3 0 chr11 124076964 124077263 -24706209 - AluSx SINE Alu -1 311 12 1526 148 3 118 chr11 124077263 124077464 -24706008 + AluSx SINE Alu 144 294 -8 2128 96 23 0 chr11 124077466 124077767 -24705705 + AluSg SINE Alu 1 308 -2 1560 89 4 4 chr11 124077926 124078151 -24705321 + AluY SINE Alu 74 298 -13 1703 139 11 0 chr11 124078151 124078424 -24705048 - AluSx SINE Alu -36 276 1 1150 153 0 53 chr11 124078442 124078670 -24704802 - AluSg/x SINE Alu -15 297 82 1751 102 0 4 chr11 124078675 124078919 -24704553 - AluSg SINE Alu -13 297 55 2140 117 0 0 chr11 124078960 124079258 -24704214 + AluSx SINE Alu 1 298 -14 310 293 95 9 chr11 124079420 124079524 -24703948 - MER5B DNA MER1_type -1 177 61 2366 65 3 7 chr11 124079524 124079832 -24703640 + AluY SINE Alu 1 307 -4 310 293 95 9 chr11 124079832 124079843 -24703629 - MER5B DNA MER1_type -117 61 52 2273 101 0 0 chr11 124080037 124080344 -24703128 - AluSx SINE Alu -5 307 1 2065 119 0 3 chr11 124081038 124081349 -24702123 + AluSx SINE Alu 1 310 -2 1552 110 0 9 chr11 124081424 124081643 -24701829 + AluSq SINE Alu 65 281 -32 212 0 36 0 chr11 124081645 124081673 -24701799 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 1685 154 61 0 chr11 124081689 124081968 -24701504 + AluSg SINE Alu 1 296 -14 797 156 0 30 chr11 124082231 124082366 -24701106 - AluJo SINE Alu -176 136 6 219 88 0 0 chr11 124082373 124082407 -24701065 + (T)n Simple_repeat Simple_repeat 1 34 0 633 171 72 92 chr11 124082554 124082706 -24700766 + MER61A LTR ERV1 195 343 0 187 233 0 23 chr11 124082878 124082921 -24700551 + MIR SINE MIR 111 152 -110 3381 110 20 58 chr11 124083052 124083463 -24700009 - MER4B LTR ERV1 0 779 229 2322 104 0 0 chr11 124083463 124083770 -24699702 - AluSx SINE Alu -5 307 1 3381 110 20 58 chr11 124083770 124083991 -24699481 - MER4B LTR ERV1 -550 229 1 1046 43 93 0 chr11 124084451 124084591 -24698881 - L1PA4 LINE L1 -2 6153 6001 2295 79 3 0 chr11 124084605 124084897 -24698575 - AluSp SINE Alu -16 297 5 347 280 47 41 chr11 124084905 124085111 -24698361 - MIR SINE MIR -42 220 19 324 186 0 17 chr11 124085605 124085664 -24697808 + MLT2D LTR ERVL 277 334 -80 1671 165 24 78 chr11 124085667 124086049 -24697423 + MLT1B LTR MaLR 1 361 -29 1284 110 6 6 chr11 124086194 124086376 -24697096 + AluSc SINE Alu 114 295 -14 259 221 116 47 chr11 124086564 124086650 -24696822 + L2 LINE L2 3179 3270 -2 306 217 139 83 chr11 124086688 124086868 -24696604 + L1ME4a LINE L1 5914 6103 -18 1697 160 45 0 chr11 124086936 124087100 -24696372 - AluJo SINE Alu -12 300 116 378 0 0 0 chr11 124087100 124087142 -24696330 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 1697 160 45 0 chr11 124087142 124087264 -24696208 - AluJo SINE Alu -196 116 1 2067 97 7 3 chr11 124088047 124088336 -24695136 + AluSx SINE Alu 1 290 -22 796 167 0 0 chr11 124088379 124088511 -24694961 + FLAM_C SINE Alu 2 133 0 1454 185 3 48 chr11 124088965 124089165 -24694307 - AluJb SINE Alu -13 299 116 2153 85 3 3 chr11 124089165 124089460 -24694012 + AluSc SINE Alu 1 295 -14 1454 185 3 48 chr11 124089460 124089572 -24693900 - AluJb SINE Alu -196 116 1 275 206 27 0 chr11 124089577 124089650 -24693822 + CT-rich Low_complexity Low_complexity 1 75 0 201 111 0 0 chr11 124089650 124089677 -24693795 + (TCCCC)n Simple_repeat Simple_repeat 2 28 0 786 131 0 0 chr11 124089679 124089786 -24693686 - FRAM SINE Alu -39 137 31 1632 113 0 9 chr11 124089847 124090078 -24693394 + AluSx SINE Alu 1 229 -83 800 173 43 7 chr11 124090088 124090227 -24693245 - AluJo SINE Alu -167 145 2 529 271 69 92 chr11 124090742 124091004 -24692468 - MIR SINE MIR -6 256 1 1230 91 29 6 chr11 124091025 124091200 -24692272 - AluSp SINE Alu -32 281 103 644 52 0 0 chr11 124091200 124091277 -24692195 - AluY SINE Alu -23 288 212 932 68 0 0 chr11 124091277 124091395 -24692077 - AluSq/x SINE Alu -195 118 1 812 254 96 45 chr11 124091469 124091909 -24691563 - LTR33 LTR ERVL -14 507 46 220 333 0 29 chr11 124092188 124092257 -24691215 + L2 LINE L2 3247 3313 0 397 273 139 67 chr11 124092332 124092541 -24690931 - MIR SINE MIR -19 243 20 2134 121 0 0 chr11 124093296 124093594 -24689878 + AluSx SINE Alu 1 298 -14 831 228 23 0 chr11 124093991 124094162 -24689310 + MER45A DNA AcHobo 4 178 0 219 384 53 40 chr11 124094290 124094441 -24689031 - L3b LINE CR1 -9 1574 1422 1777 111 85 0 chr11 124094476 124094747 -24688725 - AluSq SINE Alu -19 294 1 230 361 52 0 chr11 124094858 124094955 -24688517 - L2 LINE L2 0 3313 3212 555 183 25 150 chr11 124094955 124095229 -24688243 + MLT1C-int LTR MaLR 1116 1355 -16 2153 193 64 2 chr11 124095242 124095677 -24687795 + MLT1C LTR MaLR 6 467 0 698 295 97 8 chr11 124095756 124095993 -24687479 + MIR SINE MIR 2 259 -3 296 333 0 0 chr11 124096052 124096127 -24687345 + L2 LINE L2 3190 3264 -8 231 36 0 0 chr11 124096908 124096936 -24686536 + (TC)n Simple_repeat Simple_repeat 1 28 0 210 171 0 0 chr11 124098437 124098478 -24684994 + (TG)n Simple_repeat Simple_repeat 1 41 0 1542 142 130 0 chr11 124099010 124099397 -24684075 - AluSx SINE Alu 0 421 2 1823 176 3 3 chr11 124102714 124103026 -24680446 + AluJo SINE Alu 1 312 0 2024 162 51 32 chr11 124103117 124103468 -24680004 + L1MB3 LINE L1 4963 5325 -821 2151 84 3 16 chr11 124103468 124103778 -24679694 + AluY SINE Alu 1 306 -5 2024 162 51 32 chr11 124103778 124103859 -24679613 + L1MB3 LINE L1 5325 5403 -743 1579 223 46 27 chr11 124103860 124104227 -24679245 + MLT1A2 LTR MaLR 1 374 0 3995 116 18 40 chr11 124104227 124104667 -24678805 + L1MB3 LINE L1 5400 5823 -360 2151 93 3 0 chr11 124104667 124104956 -24678516 + AluSx SINE Alu 1 290 -22 3995 116 18 40 chr11 124104956 124105170 -24678302 + L1MB3 LINE L1 5823 6040 -143 3505 62 13 4 chr11 124105171 124105623 -24677849 + L1PA10 LINE L1 5708 6163 -5 2128 99 17 3 chr11 124105645 124105947 -24677525 + AluSx SINE Alu 1 306 -6 236 203 34 0 chr11 124106164 124106223 -24677249 + L1M LINE L1 5357 5417 -745 4506 179 15 17 chr11 124106237 124106249 -24677223 + L1MB7 LINE L1 5299 5310 -874 842 131 13 13 chr11 124106249 124106402 -24677070 + L1MB3 LINE L1 6029 6181 -2 4506 179 15 17 chr11 124106402 124106675 -24676797 + L1MB7 LINE L1 5310 5582 -602 2010 116 3 3 chr11 124106675 124106967 -24676505 + AluSx SINE Alu 1 292 -20 771 11 0 0 chr11 124106967 124107055 -24676417 + (GGAAA)n Simple_repeat Simple_repeat 3 90 0 4506 179 15 17 chr11 124107055 124107655 -24675817 + L1MB7 LINE L1 5580 6184 0 1718 83 0 0 chr11 124107860 124108088 -24675384 + AluSg/x SINE Alu 80 307 -3 212 300 71 0 chr11 124108366 124108436 -24675036 - MER91C DNA MER1_type -46 94 20 1802 162 0 29 chr11 124108853 124109167 -24674305 - AluJo SINE Alu -7 305 1 2296 68 3 13 chr11 124110647 124110957 -24672515 + AluYa5 SINE Alu 2 308 -3 1766 158 20 13 chr11 124110972 124111242 -24672230 + AluJb SINE Alu 7 281 -31 207 0 0 0 chr11 124111242 124111265 -24672207 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1766 158 20 13 chr11 124111265 124111298 -24672174 + AluJb SINE Alu 281 312 0 205 324 57 19 chr11 124111367 124111472 -24672000 - L2 LINE L2 -251 3021 2913 2221 74 10 0 chr11 124111866 124112162 -24671310 - AluSp SINE Alu -14 299 1 1992 141 7 0 chr11 124112203 124112508 -24670964 - AluSx SINE Alu -5 307 1 2165 115 0 0 chr11 124112643 124112947 -24670525 - AluSx SINE Alu -8 304 1 2306 88 3 0 chr11 124112972 124113278 -24670194 - AluSg SINE Alu -3 307 1 21 36 0 0 chr11 124115337 124115365 -24668107 + GC_rich Low_complexity Low_complexity 1 28 0 2586 92 26 81 chr11 124115416 124116180 -24667292 + SVA Other Other 393 868 -520 5691 81 12 42 chr11 124116197 124117139 -24666333 + SVA Other Other 433 1345 -41 380 317 71 33 chr11 124117197 124117380 -24666092 - L2 LINE L2 -197 3116 2927 * 644 265 71 10 chr11 124117360 124117556 -24665916 - MIR SINE MIR -3 259 52 859 108 58 0 chr11 124117556 124117676 -24665796 - MSTA LTR MaLR -9 419 293 1810 158 0 34 chr11 124117800 124118122 -24665350 - AluJo SINE Alu -1 311 1 2341 68 0 13 chr11 124119602 124119913 -24663559 + AluYa5 SINE Alu 2 308 -3 1787 155 20 13 chr11 124119928 124120198 -24663274 + AluJb SINE Alu 7 281 -31 207 0 0 0 chr11 124120198 124120221 -24663251 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1787 155 20 13 chr11 124120221 124120254 -24663218 + AluJb SINE Alu 281 312 0 205 324 57 19 chr11 124120323 124120428 -24663044 - L2 LINE L2 -251 3021 2913 1132 89 25 0 chr11 124120817 124120974 -24662498 - AluSc SINE Alu -14 295 135 2306 88 3 0 chr11 124121007 124121313 -24662159 + AluSg SINE Alu 1 307 -3 2165 115 0 0 chr11 124121338 124121642 -24661830 + AluSx SINE Alu 1 304 -8 1992 141 7 0 chr11 124121777 124122082 -24661390 + AluSx SINE Alu 1 307 -5 2306 87 3 0 chr11 124122123 124122435 -24661037 + AluSp SINE Alu 1 313 0 2114 78 11 7 chr11 124122582 124122904 -24660568 - AluSp SINE Alu 0 323 1 649 245 11 70 chr11 124123081 124123453 -24660019 + L1ME1 LINE L1 1875 2224 -4172 1637 184 3 3 chr11 124123494 124123788 -24659684 + AluSx SINE Alu 1 294 -18 1887 227 106 8 chr11 124123827 124124155 -24659317 + L1MD2 LINE L1 5787 6176 -183 255 103 0 0 chr11 124124155 124124194 -24659278 + (CA)n Simple_repeat Simple_repeat 2 40 0 1887 227 106 8 chr11 124124194 124124337 -24659135 + L1MD2 LINE L1 6176 6304 -55 1188 232 90 48 chr11 124124347 124124549 -24658923 + L1ME1 LINE L1 2282 2474 -3741 1629 162 26 17 chr11 124124549 124124851 -24658621 + AluJb SINE Alu 1 305 -7 1188 232 90 48 chr11 124124851 124125019 -24658453 + L1ME1 LINE L1 2474 2675 -3540 2160 104 0 0 chr11 124125019 124125316 -24658156 + AluSq SINE Alu 1 297 -16 1188 232 90 48 chr11 124125316 124125379 -24658093 + L1ME1 LINE L1 2675 2734 -3481 * 2824 224 44 4 chr11 124125376 124126100 -24657372 + L1ME1 LINE L1 4170 4922 -1293 2532 215 68 40 chr11 124126082 124126315 -24657157 + L1ME1 LINE L1 5331 5556 -679 * 1574 171 7 10 chr11 124126315 124126608 -24656864 + AluSq SINE Alu 1 292 -21 2532 215 68 40 chr11 124126608 124127076 -24656396 + L1ME1 LINE L1 5556 6052 -183 596 125 0 0 chr11 124127152 124127265 -24656207 + AluJb SINE Alu 202 314 0 1103 252 75 15 chr11 124127265 124127734 -24655738 + L1ME2 LINE L1 3251 3747 -2468 21 36 0 0 chr11 124127765 124127793 -24655679 + AT_rich Low_complexity Low_complexity 1 28 0 1078 142 12 0 chr11 124127794 124127963 -24655509 + AluSg/x SINE Alu 122 292 -18 43 29 0 15 chr11 124127963 124127977 -24655495 + AT_rich Low_complexity Low_complexity 1 14 -53 2191 86 14 0 chr11 124127977 124128268 -24655204 - AluSp SINE Alu -18 295 1 43 29 0 15 chr11 124128268 124128321 -24655151 + AT_rich Low_complexity Low_complexity 14 67 0 980 201 220 82 chr11 124128341 124128640 -24654832 - MSTC LTR MaLR 0 428 172 1988 121 3 0 chr11 124128640 124128930 -24654542 + AluSx SINE Alu 1 291 -21 980 201 220 82 chr11 124128930 124128943 -24654529 - MSTC LTR MaLR -256 172 162 1880 108 34 74 chr11 124128943 124129267 -24654205 + AluSq SINE Alu 1 311 -2 980 201 220 82 chr11 124129267 124129294 -24654178 - MSTC LTR MaLR -266 162 1 311 222 56 0 chr11 124129306 124129396 -24654076 + L1ME2 LINE L1 5216 5310 -905 233 157 29 29 chr11 124129405 124129475 -24653997 + (TTATA)n Simple_repeat Simple_repeat 5 74 0 3616 204 32 42 chr11 124129499 124129909 -24653563 + L1ME2 LINE L1 5325 5738 -495 2339 72 16 0 chr11 124129909 124130214 -24653258 + AluY SINE Alu 2 311 0 3616 204 32 42 chr11 124130214 124130622 -24652850 + L1ME2 LINE L1 5738 6149 -84 1871 131 3 7 chr11 124130622 124130919 -24652553 + AluSx SINE Alu 1 296 -16 2080 110 3 0 chr11 124130920 124131222 -24652250 + AluSx SINE Alu 1 303 0 3616 204 32 42 chr11 124131222 124131316 -24652156 + L1ME2 LINE L1 6148 6231 -2 2424 66 10 0 chr11 124131324 124131629 -24651843 + AluY SINE Alu 1 308 -3 2172 92 10 3 chr11 124131711 124132016 -24651456 + AluSx SINE Alu 2 308 -4 1790 167 0 6 chr11 124132438 124132750 -24650722 - AluJb SINE Alu -2 310 1 671 286 23 58 chr11 124135535 124135794 -24647678 - MIR SINE MIR -8 254 5 330 268 114 0 chr11 124136017 124136140 -24647332 - MIR3 SINE MIR -69 139 3 1095 229 38 15 chr11 124138580 124138723 -24644749 + L1MC4 LINE L1 6504 6657 -1385 2159 110 7 0 chr11 124138723 124139032 -24644440 + AluSx SINE Alu 1 311 -1 1095 229 38 15 chr11 124139032 124139154 -24644318 + L1MC4 LINE L1 6657 6775 -1267 1091 175 95 135 chr11 124139164 124139280 -24644192 + L1MC4 LINE L1 7458 7577 -465 1741 166 3 10 chr11 124139280 124139575 -24643897 + AluJo SINE Alu 1 293 -19 1091 175 95 135 chr11 124139575 124139861 -24643611 + L1MC4 LINE L1 7577 7843 -199 2116 125 0 0 chr11 124139861 124140166 -24643306 + AluSx SINE Alu 8 312 0 1091 175 95 135 chr11 124140166 124140213 -24643259 + L1MC4 LINE L1 7843 7890 -152 318 230 2 0 chr11 124140217 124140297 -24643175 + L1MC4 LINE L1 7913 8042 0 1514 195 7 10 chr11 124140991 124141293 -24642179 - AluJb SINE Alu -11 301 1 1711 127 73 62 chr11 124141397 124141715 -24641757 + THE1C LTR MaLR 1 326 -49 1697 88 9 0 chr11 124141715 124141971 -24641501 + AluSq SINE Alu 56 313 0 1711 127 73 62 chr11 124141971 124142022 -24641450 + THE1C LTR MaLR 326 375 0 1970 116 32 0 chr11 124142180 124142464 -24641008 - AluSx SINE Alu -15 297 5 344 350 7 28 chr11 124143325 124143468 -24640004 + MIR SINE MIR 5 144 -118 800 166 50 2 chr11 124143484 124143649 -24639823 - MLT1E3 LTR MaLR -4 620 471 290 292 100 39 chr11 124143630 124143716 -24639756 - MER63A DNA MER1_type -1485 203 104 * 1440 192 17 11 chr11 124143716 124144185 -24639287 + AluJb SINE Alu 1 471 0 290 292 100 39 chr11 124144185 124144227 -24639245 - MER63A DNA MER1_type -1584 104 66 243 290 81 40 chr11 124144350 124144474 -24638998 + L2 LINE L2 3169 3297 -16 209 182 0 0 chr11 124145206 124145239 -24638233 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 206 313 91 56 chr11 124145350 124145548 -24637924 - L2 LINE L2 -174 3098 2894 1584 167 40 17 chr11 124146284 124146584 -24636888 - AluJo SINE Alu -5 307 1 23 0 0 0 chr11 124147167 124147190 -24636282 + AT_rich Low_complexity Low_complexity 1 23 0 29 28 0 0 chr11 124147356 124147392 -24636080 + AT_rich Low_complexity Low_complexity 1 36 0 272 308 19 19 chr11 124147444 124147548 -24635924 - LTR16C LTR ERVL 0 491 388 1831 156 7 3 chr11 124147901 124148208 -24635264 + AluSx SINE Alu 1 308 -4 2059 102 3 3 chr11 124148249 124148542 -24634930 + AluSx SINE Alu 1 293 -19 1738 237 106 11 chr11 124148580 124148909 -24634563 + L1MD2 LINE L1 5787 6176 -183 267 103 0 0 chr11 124148909 124148948 -24634524 + (CA)n Simple_repeat Simple_repeat 2 40 0 1738 237 106 11 chr11 124148948 124149091 -24634381 + L1MD2 LINE L1 6176 6304 -55 363 265 175 55 chr11 124149101 124149301 -24634171 + L1 LINE L1 2213 2436 -3710 1625 163 28 0 chr11 124149303 124149585 -24633887 + AluJb SINE Alu 1 290 -22 2164 121 0 0 chr11 124150122 124150420 -24633052 - AluSx SINE Alu -14 298 1 234 242 30 0 chr11 124150429 124150495 -24632977 - MER94 DNA DNA -62 72 5 307 221 125 44 chr11 124150586 124150722 -24632750 + L1 LINE L1 3055 3201 -2945 1760 147 31 17 chr11 124151444 124151736 -24631736 + AluSx SINE Alu 1 296 -16 2294 68 7 0 chr11 124151928 124152222 -24631250 - AluSq SINE Alu -17 296 1 1907 194 11 99 chr11 124152316 124152408 -24631064 + MLT2B1 LTR ERVL 14 112 -408 1952 100 21 21 chr11 124152408 124152688 -24630784 + AluSx SINE Alu 1 280 -32 1907 194 11 99 chr11 124152688 124153142 -24630330 + MLT2B1 LTR ERVL 112 512 -8 424 294 101 60 chr11 124153144 124153253 -24630219 + L2 LINE L2 2604 2707 -607 2130 128 0 0 chr11 124153253 124153558 -24629914 - AluSx SINE Alu -7 305 1 424 294 101 60 chr11 124153558 124153795 -24629677 + L2 LINE L2 2707 2964 -350 336 172 172 0 chr11 124154119 124154183 -24629289 + MER69 DNA AcHobo 4 78 -2448 1982 100 18 0 chr11 124154199 124154480 -24628992 + AluSq SINE Alu 1 286 -27 2066 135 0 3 chr11 124154501 124154812 -24628660 - AluSx SINE Alu 0 312 3 659 148 92 0 chr11 124154814 124154956 -24628516 + MER69 DNA AcHobo 2359 2513 -13 300 98 0 0 chr11 124155169 124155210 -24628262 - MLT1B LTR MaLR -341 49 9 315 275 40 9 chr11 124155222 124155352 -24628120 - MIR SINE MIR -62 146 16 688 262 76 18 chr11 124155606 124155831 -24627641 + MIR SINE MIR 13 250 -12 33 0 0 0 chr11 124155836 124155869 -24627603 + AT_rich Low_complexity Low_complexity 1 33 0 2074 110 3 0 chr11 124155869 124156159 -24627313 + AluSx SINE Alu 1 291 -21 183 375 27 27 chr11 124157224 124157314 -24626158 + MIR3 SINE MIR 9 98 -110 784 196 64 0 chr11 124157314 124157487 -24625985 + MER5A DNA MER1_type 1 184 -5 206 309 94 20 chr11 124157495 124157644 -24625828 + MIR SINE MIR 99 258 -4 1717 119 83 18 chr11 124157889 124158167 -24625305 + AluSx SINE Alu 1 296 -16 193 212 0 0 chr11 124158426 124158459 -24625013 - L2 LINE L2 -10 3303 3271 1460 145 13 0 chr11 124158501 124158728 -24624744 + MER30 DNA MER1_type 1 230 0 420 300 76 49 chr11 124159216 124159439 -24624033 - MIR SINE MIR -3 259 31 2093 88 3 3 chr11 124159516 124159838 -24623634 - AluSx SINE Alu 0 322 1 342 161 18 0 chr11 124159838 124159894 -24623578 - L2 LINE L2 -6 3307 3251 348 24 0 0 chr11 124160291 124160332 -24623140 + (CA)n Simple_repeat Simple_repeat 2 42 0 1098 171 5 3 chr11 124161458 124161658 -24621814 + L1MD3 LINE L1 7788 7979 -16 279 313 0 22 chr11 124161678 124161812 -24621660 + CT-rich Low_complexity Low_complexity 1 131 0 371 291 19 19 chr11 124162998 124163101 -24620371 - L2 LINE L2 -231 3082 2980 216 297 14 54 chr11 124163098 124163172 -24620300 + L2 LINE L2 3202 3272 0 * 313 261 235 0 chr11 124164761 124164880 -24618592 + MIR3 SINE MIR 19 165 -43 430 328 17 34 chr11 124165197 124165374 -24618098 + MER5B DNA MER1_type 2 175 -3 684 279 132 5 chr11 124168373 124168577 -24614895 + MIR SINE MIR 12 241 -21 2208 104 3 0 chr11 124168624 124168933 -24614539 - AluSg SINE Alu 0 310 1 235 114 68 0 chr11 124169223 124169267 -24614205 - MIR3 SINE MIR 0 208 162 356 0 23 0 chr11 124169831 124169875 -24613597 + (TG)n Simple_repeat Simple_repeat 2 46 0 591 314 50 9 chr11 124169957 124170177 -24613295 + MIR SINE MIR 34 262 0 216 213 0 21 chr11 124170237 124170284 -24613188 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 304 302 86 0 chr11 124170284 124170400 -24613072 - MIR SINE MIR -56 206 81 243 0 0 0 chr11 124171299 124171326 -24612146 + (CA)n Simple_repeat Simple_repeat 1 27 0 218 191 43 0 chr11 124171471 124171518 -24611954 + MER5B DNA MER1_type 1 49 -129 1867 128 0 14 chr11 124171538 124171827 -24611645 - AluJb SINE Alu -27 285 1 495 235 7 81 chr11 124171828 124171977 -24611495 - MER5B DNA MER1_type -35 143 6 253 167 0 0 chr11 124172953 124172995 -24610477 + L2 LINE L2 3263 3304 -9 2210 75 0 14 chr11 124173107 124173428 -24610044 - AluSq SINE Alu 0 313 1 292 255 49 69 chr11 124173464 124173566 -24609906 - MER5A DNA MER1_type -57 132 33 590 244 52 87 chr11 124174270 124174357 -24609115 - MIR SINE MIR -3 259 171 2051 109 3 23 chr11 124174357 124174659 -24608813 + AluSq SINE Alu 1 296 -17 590 244 52 87 chr11 124174659 124174801 -24608671 - MIR SINE MIR -91 171 38 206 325 0 65 chr11 124175267 124175344 -24608128 + MIR SINE MIR 120 191 -71 287 250 0 26 chr11 124175683 124175759 -24607713 - MIR SINE MIR -71 137 64 311 213 62 25 chr11 124175783 124175863 -24607609 + MIR SINE MIR 69 151 -111 1905 210 3 6 chr11 124175875 124176227 -24607245 - MLT1A1 LTR MaLR -12 353 3 255 286 36 71 chr11 124176233 124176373 -24607099 + MIR SINE MIR 128 262 0 1994 129 0 19 chr11 124177074 124177383 -24606089 - AluSx SINE Alu -9 303 1 2430 74 0 0 chr11 124177396 124177727 -24605745 - AluY SINE Alu 0 331 1 619 180 167 7 chr11 124178618 124178768 -24604704 + MER96 DNA MER1_type 1 174 -1 2188 74 14 7 chr11 124178852 124179148 -24604324 - AluSq SINE Alu -15 298 1 1982 145 0 0 chr11 124179322 124179619 -24603853 - AluSx SINE Alu -15 297 1 573 260 41 101 chr11 124179883 124180311 -24603161 - L2 LINE L2 -1 3312 2913 252 318 78 23 chr11 124180813 124180942 -24602530 - MIR3 SINE MIR -3 205 70 511 269 7 35 chr11 124181006 124181151 -24602321 - MIR SINE MIR -114 148 8 180 0 0 0 chr11 124181569 124181589 -24601883 + (T)n Simple_repeat Simple_repeat 1 20 0 298 309 201 2 chr11 124181871 124182015 -24601457 - MIR SINE MIR -21 187 17 2064 123 3 0 chr11 124182276 124182560 -24600912 - AluSx SINE Alu -19 293 9 427 291 111 13 chr11 124182587 124182821 -24600651 + MARNA DNA Mariner 177 433 -153 383 297 64 26 chr11 124182850 124182964 -24600508 + MIR3 SINE MIR 34 154 -54 2554 165 33 29 chr11 124182964 124183448 -24600024 - MER66B LTR ERV1 0 486 1 383 297 64 26 chr11 124183448 124183492 -24599980 + MIR3 SINE MIR 154 195 -13 2282 123 7 0 chr11 124183716 124184025 -24599447 + AluSx SINE Alu 1 311 -1 1644 153 11 31 chr11 124184287 124184548 -24598924 - AluJo SINE Alu -56 256 1 597 298 63 9 chr11 124184615 124184846 -24598626 + MIR SINE MIR 19 258 -4 2226 94 47 3 chr11 124185730 124186027 -24597445 + AluSq SINE Alu 1 310 -3 2204 113 3 0 chr11 124186702 124187016 -24596456 + AluSq SINE Alu 1 313 0 508 299 133 30 chr11 124187099 124187333 -24596139 - MIR SINE MIR 0 262 5 1156 226 73 57 chr11 124187688 124187752 -24595720 - MLT1J1 LTR MaLR 0 446 385 627 138 83 39 chr11 124187752 124187933 -24595539 + MER53 DNA DNA 1 189 0 1156 226 73 57 chr11 124187933 124188307 -24595165 - MLT1J1 LTR MaLR -61 385 1 1654 174 20 14 chr11 124188537 124188831 -24594641 - AluJb SINE Alu -14 298 3 23 0 0 0 chr11 124188833 124188856 -24594616 + AT_rich Low_complexity Low_complexity 1 23 0 295 295 87 55 chr11 124189136 124189319 -24594153 - L2 LINE L2 -5 3308 3120 217 159 23 0 chr11 124191140 124191184 -24592288 + (TGG)n Simple_repeat Simple_repeat 1 45 0 2332 114 0 0 chr11 124191387 124191685 -24591787 - AluSx SINE Alu -14 298 1 21 0 0 0 chr11 124192053 124192074 -24591398 + AT_rich Low_complexity Low_complexity 1 21 0 698 310 61 12 chr11 124192403 124192648 -24590824 + MIR SINE MIR 6 262 0 294 132 0 0 chr11 124195235 124195288 -24588184 + (GGGGA)n Simple_repeat Simple_repeat 3 55 0 255 286 36 71 chr11 124198873 124199013 -24584459 - MIR SINE MIR 0 262 128 1800 211 3 3 chr11 124199019 124199360 -24584112 + MLT1A1 LTR MaLR 3 343 -22 307 213 62 25 chr11 124199383 124199463 -24584009 - MIR SINE MIR -111 151 69 289 250 0 26 chr11 124199487 124199563 -24583909 + MIR SINE MIR 64 137 -71 206 325 0 65 chr11 124199902 124199979 -24583493 - MIR SINE MIR -71 191 120 468 204 93 9 chr11 124200444 124200552 -24582920 + MIR SINE MIR 38 154 -108 2211 106 3 23 chr11 124200586 124200888 -24582584 - AluSq SINE Alu -17 296 1 304 261 54 22 chr11 124201009 124201101 -24582371 - MIR3 SINE MIR -16 192 98 1348 226 67 40 chr11 124202103 124202550 -24580922 + LTR16B LTR ERVL 1 459 -5 385 238 198 0 chr11 124202889 124203015 -24580457 - MIR SINE MIR -56 206 56 440 296 107 10 chr11 124203451 124203657 -24579815 + L2 LINE L2 1876 2101 -1213 325 289 0 0 chr11 124203662 124203745 -24579727 + MLT1L LTR MaLR 1 83 -532 364 188 29 0 chr11 124203824 124203893 -24579579 + MER5A DNA MER1_type 5 75 -114 1795 90 6 65 chr11 124203894 124204216 -24579256 + AluY SINE Alu 1 303 -8 467 279 121 19 chr11 124204567 124204688 -24578784 + MLT1L LTR MaLR 330 437 -178 1553 232 71 16 chr11 124204688 124205127 -24578345 + MLT1C LTR MaLR 4 466 -1 467 279 121 19 chr11 124205127 124205220 -24578252 + MLT1L LTR MaLR 437 566 -49 652 327 101 31 chr11 124205294 124205652 -24577820 + L2 LINE L2 2124 2525 -789 1882 177 3 6 chr11 124205652 124205963 -24577509 - AluSx SINE Alu -2 310 1 652 327 101 31 chr11 124205963 124206081 -24577391 + L2 LINE L2 2525 2633 -681 436 260 8 74 chr11 124206119 124206236 -24577236 - L1M4 LINE L1 -2574 3572 3478 2017 134 37 0 chr11 124206236 124206534 -24576938 + AluSq SINE Alu 1 309 -4 436 260 8 74 chr11 124206534 124206658 -24576814 - L1M4 LINE L1 -2668 3478 3347 2124 113 0 17 chr11 124206664 124206956 -24576516 - AluSx SINE Alu -21 291 5 1653 223 62 27 chr11 124206974 124207244 -24576228 - MLT1C LTR MaLR 0 467 173 2340 91 0 19 chr11 124207244 124207551 -24575921 - AluY SINE Alu -10 301 1 1653 223 62 27 chr11 124207551 124207729 -24575743 - MLT1C LTR MaLR -294 173 3 613 295 136 7 chr11 124207758 124208171 -24575301 + L1M4 LINE L1 4647 5112 -1034 449 187 187 19 chr11 124208550 124208657 -24574815 + FLAM_C SINE Alu 2 126 -17 313 308 66 66 chr11 124208768 124208995 -24574477 + L2 LINE L2 102 328 -2986 344 219 70 53 chr11 124209006 124209120 -24574352 - MER5A DNA MER1_type -73 116 1 1036 320 78 34 chr11 124209136 124209698 -24573774 + L2 LINE L2 1043 1629 -1685 598 171 0 9 chr11 124209698 124209803 -24573669 - AluJb SINE Alu -207 105 2 818 144 32 0 chr11 124209809 124209934 -24573538 - AluJb SINE Alu -15 297 169 4044 156 11 46 chr11 124210144 124210367 -24573105 + L1MB7 LINE L1 5347 5576 -608 2139 124 3 10 chr11 124210367 124210673 -24572799 - AluSx SINE Alu -8 304 1 4044 156 11 46 chr11 124210673 124211247 -24572225 + L1MB7 LINE L1 5576 6112 -72 1808 159 3 14 chr11 124211247 124211542 -24571930 - AluJo SINE Alu -20 292 1 4044 156 11 46 chr11 124211542 124211610 -24571862 + L1MB7 LINE L1 6112 6181 -3 1450 148 0 13 chr11 124211611 124211841 -24571631 - AluJo SINE Alu 0 312 86 942 281 127 57 chr11 124211865 124212519 -24570953 + L2 LINE L2 1955 2654 -660 392 305 84 9 chr11 124212488 124212701 -24570771 + L2 LINE L2 2827 3055 -217 * 1535 167 8 0 chr11 124213297 124213569 -24569903 - AluJb SINE Alu 0 307 34 188 268 0 98 chr11 124215167 124215249 -24568223 - L2 LINE L2 -46 3226 3153 2146 145 0 0 chr11 124216228 124216532 -24566940 + AluSx SINE Alu 1 304 -8 240 336 82 18 chr11 124216729 124216839 -24566633 - L2 LINE L2 -5 3267 3151 286 313 0 52 chr11 124216854 124216988 -24566484 - L2 LINE L2 -467 2847 2721 243 290 32 11 chr11 124217534 124217627 -24565845 - MIR SINE MIR -120 142 48 560 92 0 0 chr11 124217763 124217839 -24565633 - MADE1 DNA Mariner -4 76 1 356 191 202 0 chr11 124217979 124218073 -24565399 + MIR SINE MIR 150 262 0 300 308 71 59 chr11 124218057 124218226 -24565246 - L2 LINE L2 -6 3307 3137 * 238 325 95 24 chr11 124219184 124219310 -24564162 + L2 LINE L2 3134 3268 -4 502 254 83 6 chr11 124219362 124219531 -24563941 - MER112 DNA MER1_type -51 209 28 21 36 0 0 chr11 124220474 124220502 -24562970 + AT_rich Low_complexity Low_complexity 1 28 0 184 258 48 16 chr11 124222140 124222202 -24561270 + L2 LINE L2 2717 2780 -534 231 296 42 0 chr11 124222232 124222303 -24561169 - MIR SINE MIR -11 251 178 195 42 0 0 chr11 124222360 124222384 -24561088 + (TTG)n Simple_repeat Simple_repeat 3 26 0 1914 157 4 0 chr11 124222393 124222674 -24560798 - AluSx SINE Alu -30 282 1 1480 136 26 4 chr11 124223003 124223231 -24560241 - AluJb SINE Alu -79 233 1 535 263 95 0 chr11 124223232 124223369 -24560103 + MIR SINE MIR 113 262 0 231 350 50 8 chr11 124224013 124224133 -24559339 + MIR SINE MIR 33 157 -105 437 238 22 65 chr11 124224976 124225161 -24558311 + CT-rich Low_complexity Low_complexity 1 177 0 1842 184 0 7 chr11 124225675 124225979 -24557493 + AluJb SINE Alu 1 302 -10 362 278 13 26 chr11 124225982 124226133 -24557339 - MLT1I LTR MaLR -260 149 1 351 228 29 103 chr11 124226147 124226283 -24557189 + MIR SINE MIR 96 221 -41 1150 204 12 8 chr11 124226902 124227142 -24556330 - MLT1D LTR MaLR -8 497 257 2426 64 3 0 chr11 124227770 124228068 -24555404 - AluSp SINE Alu -14 299 1 651 274 50 22 chr11 124230979 124231081 -24552391 - MIR SINE MIR -3 259 161 2093 119 7 0 chr11 124231081 124231376 -24552096 - AluSp SINE Alu -16 297 1 651 274 50 22 chr11 124231376 124231509 -24551963 - MIR SINE MIR -101 161 19 239 228 117 111 chr11 124232371 124232430 -24551042 + MIR SINE MIR 78 135 -127 2428 83 0 3 chr11 124232430 124232731 -24550741 - AluSc SINE Alu -9 300 1 239 228 117 111 chr11 124232731 124232833 -24550639 + MIR SINE MIR 135 240 -22 2021 142 0 0 chr11 124233066 124233368 -24550104 - AluSx SINE Alu 0 302 1 21 0 0 0 chr11 124233817 124233838 -24549634 + AT_rich Low_complexity Low_complexity 1 21 0 2511 61 0 0 chr11 124234753 124235046 -24548426 - AluY SINE Alu -18 293 1 457 277 94 38 chr11 124235424 124235519 -24547953 - MIR SINE MIR 0 262 174 1390 195 101 13 chr11 124235519 124235752 -24547720 + MER46C DNA MER2_type 1 269 -69 2986 9 0 0 chr11 124235752 124236069 -24547403 - AluYb8 SINE Alu -1 317 1 1390 195 101 13 chr11 124236069 124236143 -24547329 + MER46C DNA MER2_type 269 335 -3 457 277 94 38 chr11 124236143 124236282 -24547190 - MIR SINE MIR -88 174 15 206 333 50 10 chr11 124236627 124236726 -24546746 + MIR SINE MIR 44 146 -62 21 0 0 0 chr11 124236907 124236928 -24546544 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr11 124237264 124237288 -24546184 + AT_rich Low_complexity Low_complexity 1 24 0 798 266 43 0 chr11 124237526 124237733 -24545739 + MIR SINE MIR 42 257 -5 345 321 61 33 chr11 124238260 124238432 -24545040 - MIR SINE MIR -11 251 70 2590 39 7 13 chr11 124238432 124238737 -24544735 + AluY SINE Alu 1 303 -8 345 321 61 33 chr11 124238737 124238776 -24544696 - MIR SINE MIR -192 70 34 191 302 105 23 chr11 124239324 124239410 -24544062 + L3b LINE CR1 1340 1432 -151 305 248 122 35 chr11 124239601 124239785 -24543687 + MIR3 SINE MIR 7 205 -57 365 259 113 29 chr11 124240827 124240966 -24542506 + MIR SINE MIR 4 152 -62 2131 121 0 44 chr11 124241117 124241432 -24542040 - AluSx SINE Alu -11 301 1 186 43 0 0 chr11 124242282 124242305 -24541167 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 2080 83 4 4 chr11 124244467 124244731 -24538741 + AluSq SINE Alu 34 297 -16 1959 140 31 17 chr11 124244923 124245215 -24538257 - AluSx SINE Alu -16 296 1 310 197 82 95 chr11 124245926 124246073 -24537399 - L1 LINE L1 -2947 3199 3055 2324 120 0 0 chr11 124246239 124246538 -24536934 + AluSx SINE Alu 1 299 -13 1761 185 10 0 chr11 124246701 124246998 -24536474 - AluJb SINE Alu -12 300 1 2127 121 6 35 chr11 124247037 124247234 -24536238 - AluSx SINE Alu -6 306 120 2163 125 0 35 chr11 124247234 124247547 -24535925 - AluSx SINE Alu -10 302 1 2127 121 6 35 chr11 124247547 124247664 -24535808 - AluSx SINE Alu -192 120 1 367 257 59 22 chr11 124248239 124248375 -24535097 + MIR SINE MIR 35 175 -87 460 289 37 47 chr11 124248442 124248632 -24534840 + L2 LINE L2 3118 3305 -8 2353 93 10 0 chr11 124248659 124248959 -24534513 + AluSp SINE Alu 1 303 -10 392 305 84 9 chr11 124249063 124249276 -24534196 - L2 LINE L2 -217 3055 2827 * 920 283 129 57 chr11 124249245 124249898 -24533574 - L2 LINE L2 -660 2654 1955 1466 148 0 13 chr11 124249922 124250152 -24533320 + AluJo SINE Alu 86 312 0 4183 149 11 46 chr11 124250153 124250221 -24533251 - L1MB7 LINE L1 -3 6181 6112 1808 159 3 14 chr11 124250221 124250516 -24532956 + AluJo SINE Alu 1 292 -20 4183 149 11 46 chr11 124250516 124251090 -24532382 - L1MB7 LINE L1 -72 6112 5576 2133 124 3 10 chr11 124251090 124251396 -24532076 + AluSx SINE Alu 1 304 -8 4183 149 11 46 chr11 124251396 124251619 -24531853 - L1MB7 LINE L1 -608 5576 5347 827 143 32 0 chr11 124251829 124251955 -24531517 + AluJb SINE Alu 169 298 -14 715 135 0 0 chr11 124251960 124252064 -24531408 + AluJb SINE Alu 2 105 -207 1036 320 78 34 chr11 124252064 124252626 -24530846 - L2 LINE L2 -1685 1629 1043 344 219 70 53 chr11 124252642 124252756 -24530716 + MER5A DNA MER1_type 1 116 -73 313 308 66 66 chr11 124252767 124252994 -24530478 - L2 LINE L2 -2986 328 102 619 179 116 0 chr11 124253105 124253217 -24530255 - FLAM_C SINE Alu -17 126 2 1290 104 0 0 chr11 124253225 124253389 -24530083 - AluSg/x SINE Alu -12 300 137 230 202 90 67 chr11 124253390 124253479 -24529993 - MLT1F LTR MaLR -428 114 24 560 314 69 3 chr11 124253510 124253816 -24529656 - L1M4 LINE L1 -1034 5112 4787 1692 222 60 27 chr11 124253952 124254131 -24529341 + MLT1C LTR MaLR 3 175 -292 2352 88 0 20 chr11 124254131 124254437 -24529035 + AluY SINE Alu 1 300 -11 1692 222 60 27 chr11 124254437 124254707 -24528765 + MLT1C LTR MaLR 175 467 0 2124 113 0 17 chr11 124254725 124255017 -24528455 + AluSx SINE Alu 5 291 -21 418 255 8 78 chr11 124255023 124255148 -24528324 + L1M4 LINE L1 3347 3448 -2698 2017 134 37 0 chr11 124255148 124255446 -24528026 - AluSq SINE Alu -4 309 1 418 255 8 78 chr11 124255446 124255563 -24527909 + L1M4 LINE L1 3448 3572 -2574 652 327 101 31 chr11 124255601 124255719 -24527753 - L2 LINE L2 -681 2633 2525 1882 177 3 6 chr11 124255719 124256030 -24527442 + AluSx SINE Alu 1 310 -2 652 327 101 31 chr11 124256030 124256388 -24527084 - L2 LINE L2 -789 2525 2124 994 286 83 65 chr11 124256462 124256555 -24526917 - MLT1L LTR MaLR -49 566 476 1553 232 71 16 chr11 124256555 124256994 -24526478 - MLT1C LTR MaLR -1 466 4 994 286 83 65 chr11 124256994 124257293 -24526179 - MLT1L LTR MaLR -139 476 159 834 203 21 57 chr11 124257293 124257414 -24526058 - MER5A DNA MER1_type 0 189 76 2531 76 0 0 chr11 124257414 124257715 -24525757 - AluY SINE Alu -10 301 1 834 203 21 57 chr11 124257715 124257785 -24525687 - MER5A DNA MER1_type -113 76 5 994 286 83 65 chr11 124257785 124257947 -24525525 - MLT1L LTR MaLR -456 159 1 440 296 107 10 chr11 124257952 124258158 -24525314 - L2 LINE L2 -1213 2101 1876 385 238 198 0 chr11 124258594 124258720 -24524752 + MIR SINE MIR 56 206 -56 1334 226 70 40 chr11 124259059 124259505 -24523967 - LTR16B LTR ERVL -5 459 1 318 278 56 0 chr11 124260505 124260595 -24522877 + MIR3 SINE MIR 98 192 -16 * 377 312 163 50 chr11 124260591 124260715 -24522757 - L2 LINE L2 -4 3268 3159 2431 95 0 7 chr11 124260715 124261020 -24522452 + AluSx SINE Alu 1 303 -9 377 312 163 50 chr11 124261020 124261196 -24522276 - L2 LINE L2 -113 3159 2934 381 216 72 0 chr11 124261221 124261318 -24522154 - MER91C DNA MER1_type -36 104 1 254 298 46 30 chr11 124262267 124262398 -24521074 - MER94 DNA DNA 0 134 2 239 304 104 32 chr11 124262439 124262564 -24520908 - L2 LINE L2 -1 3271 3138 1941 129 31 0 chr11 124262614 124262900 -24520572 - AluJo SINE Alu -8 304 10 210 302 329 0 chr11 124263541 124263690 -24519782 - L3b LINE CR1 -12 1571 1374 1747 134 47 7 chr11 124263701 124263977 -24519495 + AluSg SINE Alu 1 287 -23 1107 129 0 0 chr11 124264162 124264309 -24519163 + AluSq/x SINE Alu 1 147 -165 905 143 8 0 chr11 124264547 124264680 -24518792 + AluSg/x SINE Alu 159 292 -20 507 253 121 44 chr11 124264851 124265007 -24518465 - MIR SINE MIR -4 258 115 1921 184 83 67 chr11 124265007 124265255 -24518217 + MLT1D LTR MaLR 3 246 -259 279 0 0 0 chr11 124265255 124265286 -24518186 + (CA)n Simple_repeat Simple_repeat 2 32 0 216 0 0 0 chr11 124265285 124265309 -24518163 + (GA)n Simple_repeat Simple_repeat 2 25 0 * 1921 184 83 67 chr11 124265286 124265555 -24517917 + MLT1D LTR MaLR 246 505 0 507 253 121 44 chr11 124265555 124265580 -24517892 - MIR SINE MIR -147 115 63 523 280 36 11 chr11 124266973 124267134 -24516338 - MIR SINE MIR -50 158 20 238 266 72 50 chr11 124267272 124267411 -24516061 - L3b LINE CR1 -92 1491 1350 189 281 45 75 chr11 124268405 124268604 -24514868 + L3b LINE CR1 1162 1354 -229 22 35 0 0 chr11 124269756 124269785 -24513687 + AT_rich Low_complexity Low_complexity 1 29 0 1869 117 14 41 chr11 124269936 124270226 -24513246 - AluSx SINE Alu -5 307 26 1198 65 0 0 chr11 124270304 124270457 -24513015 + L1PA4 LINE L1 6000 6152 -3 235 241 0 0 chr11 124270460 124270518 -24512954 + A-rich Low_complexity Low_complexity 1 58 0 1931 126 32 11 chr11 124271470 124271747 -24511725 - AluSx SINE Alu -22 290 8 321 269 66 87 chr11 124271945 124272031 -24511441 - MIR SINE MIR -43 219 133 2155 109 0 11 chr11 124272031 124272351 -24511121 - AluSg SINE Alu 0 317 1 321 269 66 87 chr11 124272351 124272492 -24510980 - MIR SINE MIR -129 133 15 547 286 155 5 chr11 124272732 124272938 -24510534 + MIR SINE MIR 13 249 -13 1682 151 46 39 chr11 124273076 124273381 -24510091 - AluJb SINE Alu -5 307 1 276 240 29 51 chr11 124274945 124275091 -24508381 + MIR SINE MIR 102 242 -20 282 29 0 0 chr11 124275100 124275135 -24508337 + (CA)n Simple_repeat Simple_repeat 1 35 0 236 289 58 0 chr11 124275312 124275416 -24508056 + L1MC/D LINE L1 5678 5787 -2021 2186 106 0 20 chr11 124275892 124276195 -24507277 - AluSg SINE Alu -13 297 1 478 278 92 95 chr11 124276262 124276367 -24507105 - L2 LINE L2 0 3272 3168 749 153 30 15 chr11 124276367 124276498 -24506974 - FLAM_C SINE Alu 0 133 1 478 278 92 95 chr11 124276498 124277136 -24506336 - L2 LINE L2 -104 3168 2532 2295 102 3 10 chr11 124278849 124279154 -24504318 - AluSx SINE Alu -9 303 1 548 303 94 66 chr11 124280014 124280580 -24502892 + L2 LINE L2 2665 3247 -25 294 274 147 56 chr11 124281206 124281403 -24502069 + L3 LINE CR1 1357 1571 -6 1926 144 13 13 chr11 124281823 124282121 -24501351 - AluSx SINE Alu -14 298 1 907 170 0 0 chr11 124282160 124282301 -24501171 + AluSq/x SINE Alu 2 142 -170 319 283 22 11 chr11 124282521 124282613 -24500859 - L2 LINE L2 -4 3268 3176 198 274 59 59 chr11 124282694 124282796 -24500676 - L2 LINE L2 -825 2489 2388 387 0 0 0 chr11 124284212 124284255 -24499217 + (CA)n Simple_repeat Simple_repeat 2 44 0 582 238 122 29 chr11 124284937 124285109 -24498363 + MIR3 SINE MIR 5 192 -16 45 55 0 0 chr11 124286120 124286193 -24497279 + AT_rich Low_complexity Low_complexity 1 73 0 428 238 238 0 chr11 124286233 124286439 -24497033 - L1ME4a LINE L1 -14 6107 5853 1231 149 15 5 chr11 124286446 124286641 -24496831 - AluJb SINE Alu 0 312 116 186 43 0 0 chr11 124287017 124287040 -24496432 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 2209 152 0 0 chr11 124287506 124287815 -24495657 - AluJb SINE Alu -3 309 1 437 238 22 65 chr11 124288329 124288514 -24494958 + GA-rich Low_complexity Low_complexity 1 177 0 207 358 50 8 chr11 124289357 124289477 -24493995 - MIR SINE MIR -105 157 33 535 263 95 0 chr11 124290121 124290258 -24493214 - MIR SINE MIR 0 262 113 1480 136 26 4 chr11 124290259 124290487 -24492985 + AluJb SINE Alu 1 233 -79 2027 157 3 6 chr11 124290816 124291128 -24492344 + AluSx SINE Alu 1 311 -1 466 215 145 40 chr11 124292475 124292543 -24490929 - MIR SINE MIR -24 238 179 2464 148 21 32 chr11 124292543 124292794 -24490678 - MSTB LTR MaLR 0 426 178 2381 61 0 0 chr11 124292794 124293096 -24490376 + AluY SINE Alu 1 302 0 2464 148 21 32 chr11 124293096 124293272 -24490200 - MSTB LTR MaLR -248 178 1 466 215 145 40 chr11 124293272 124293403 -24490069 - MIR SINE MIR -83 179 18 22 0 0 0 chr11 124293557 124293579 -24489893 + AT_rich Low_complexity Low_complexity 1 22 0 279 257 48 57 chr11 124293644 124293749 -24489723 + MIR SINE MIR 46 149 -113 685 142 23 5 chr11 124293961 124294089 -24489383 - MLT1A1 LTR MaLR -200 174 1 2075 128 10 10 chr11 124294123 124294435 -24489037 - AluSx SINE Alu 0 312 1 1956 154 11 0 chr11 124294470 124294756 -24488716 + AluJo SINE Alu 1 289 -23 279 133 0 0 chr11 124294756 124294801 -24488671 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 295 271 62 10 chr11 124294801 124294897 -24488575 + MIR SINE MIR 138 238 -24 749 242 67 77 chr11 124295135 124295432 -24488040 + L2 LINE L2 3020 3313 0 6397 60 4 3 chr11 124295936 124296715 -24486757 - LTR17 LTR ERV1 0 780 1 611 244 286 7 chr11 124296854 124297137 -24486335 - L3 LINE CR1 -30 1547 1186 262 275 12 12 chr11 124297270 124297350 -24486122 - MIR3 SINE MIR -48 160 81 1985 132 0 0 chr11 124297570 124297835 -24485637 - AluSq SINE Alu -48 265 1 1275 241 21 72 chr11 124297842 124298327 -24485145 + L2 LINE L2 2850 3309 -4 2319 161 48 7 chr11 124298658 124299073 -24484399 + MSTB1 LTR MaLR 1 432 0 1857 204 47 33 chr11 124299114 124299604 -24483868 + MLT1D LTR MaLR 1 497 -8 351 228 29 103 chr11 124300223 124300359 -24483113 - MIR SINE MIR -41 221 96 362 278 13 26 chr11 124300373 124300524 -24482948 + MLT1I LTR MaLR 1 149 -260 2232 114 3 0 chr11 124300527 124300825 -24482647 - AluSg SINE Alu -10 300 2 2227 132 0 13 chr11 124300830 124301141 -24482331 - AluSx SINE Alu -5 307 1 478 235 156 11 chr11 124301150 124301329 -24482143 + MLT1I LTR MaLR 198 402 -7 380 240 207 8 chr11 124301333 124301454 -24482018 + MIR SINE MIR 53 197 -65 2241 110 3 3 chr11 124301464 124301756 -24481716 - AluSx SINE Alu -14 298 7 421 294 98 6 chr11 124302085 124302248 -24481224 + MIR SINE MIR 55 232 -30 201 284 136 0 chr11 124302296 124302384 -24481088 + MIR3 SINE MIR 84 183 -25 578 180 20 0 chr11 124303814 124303914 -24479558 - MER5A DNA MER1_type -84 105 4 1092 35 69 0 chr11 124304065 124304210 -24479262 - L1PA4 LINE L1 0 6155 6001 2095 108 0 7 chr11 124304276 124304553 -24478919 + AluSx SINE Alu 1 275 -37 252 0 0 0 chr11 124304557 124304585 -24478887 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 312 302 0 57 chr11 124304587 124304693 -24478779 - MIR SINE MIR -55 153 54 1995 149 0 14 chr11 124304771 124305067 -24478405 + AluJo SINE Alu 1 292 -20 729 246 63 11 chr11 124305108 124305283 -24478189 + MIR SINE MIR 20 203 -59 420 118 0 0 chr11 124305340 124305408 -24478064 + (TCTA)n Simple_repeat Simple_repeat 1 68 0 207 200 0 22 chr11 124305450 124305495 -24477977 + L2 LINE L2 3207 3250 -22 413 265 13 26 chr11 124305495 124305646 -24477826 - MER117 DNA MER1_type -36 161 13 260 373 24 24 chr11 124305727 124305853 -24477619 + L2 LINE L2 3144 3269 -3 2606 191 27 37 chr11 124306050 124306614 -24476858 + MER74A LTR ERVL 1 558 0 3188 118 26 43 chr11 124306666 124306870 -24476602 + L1MA4 LINE L1 5728 5934 -366 234 0 0 0 chr11 124306870 124306896 -24476576 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 3188 118 26 43 chr11 124306896 124307096 -24476376 + L1MA4 LINE L1 5934 6122 -178 2146 132 0 3 chr11 124307096 124307400 -24476072 + AluSx SINE Alu 1 303 -9 3188 118 26 43 chr11 124307400 124307570 -24475902 + L1MA4 LINE L1 6122 6293 -7 2421 94 3 3 chr11 124309387 124309694 -24473778 + AluSx SINE Alu 1 307 -5 656 200 39 83 chr11 124309700 124309930 -24473542 + MER61A LTR ERV1 1 220 -123 288 0 0 0 chr11 124310030 124310062 -24473410 + (T)n Simple_repeat Simple_repeat 1 32 0 216 0 0 0 chr11 124310116 124310140 -24473332 + (T)n Simple_repeat Simple_repeat 1 24 0 238 246 109 51 chr11 124310798 124310936 -24472536 + L2 LINE L2 3083 3228 -85 343 239 130 0 chr11 124311118 124311210 -24472262 + L2 LINE L2 3209 3312 -1 582 246 208 0 chr11 124311251 124311458 -24472014 - MIR SINE MIR -11 251 5 765 262 74 9 chr11 124315146 124315375 -24468097 - MIR SINE MIR -6 256 13 192 40 0 0 chr11 124315661 124315686 -24467786 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 193 312 203 0 chr11 124316872 124317010 -24466462 - MIR3 SINE MIR -23 185 20 690 139 0 69 chr11 124317259 124317403 -24466069 + AluSx SINE Alu 26 159 -153 279 255 89 37 chr11 124317796 124317921 -24465551 + MIR SINE MIR 22 154 -58 340 246 119 8 chr11 124318180 124318306 -24465166 - MIR SINE MIR 0 262 123 1001 98 8 0 chr11 124318306 124318438 -24465034 - AluSg/x SINE Alu -16 294 162 414 57 0 0 chr11 124318824 124318877 -24464595 + (TG)n Simple_repeat Simple_repeat 1 53 0 237 304 179 18 chr11 124319547 124319659 -24463813 - MIR3 SINE MIR -37 171 42 209 77 0 0 chr11 124319973 124319999 -24463473 - L2 LINE L2 -25 3247 3222 2033 75 8 8 chr11 124320132 124320397 -24463075 - AluSp SINE Alu -48 265 1 271 170 0 4 chr11 124320643 124320698 -24462774 - Alu SINE Alu -11 291 248 755 303 35 16 chr11 124321105 124321359 -24462113 - MIR SINE MIR 0 262 4 246 116 0 0 chr11 124322103 124322146 -24461326 + (GA)n Simple_repeat Simple_repeat 1 43 0 181 306 9 93 chr11 124323129 124323237 -24460235 + L2 LINE L2 3155 3253 -19 458 338 15 0 chr11 124323586 124323719 -24459753 - L2 LINE L2 -1 3271 3137 342 339 55 6 chr11 124324146 124324311 -24459161 - MIR SINE MIR -88 174 2 315 351 34 12 chr11 124324390 124324580 -24458892 - MIR SINE MIR -57 205 13 511 291 16 65 chr11 124324793 124324889 -24458583 + L2 LINE L2 3015 3114 -199 2016 141 7 0 chr11 124324889 124325195 -24458277 - AluSq SINE Alu 0 308 1 511 291 16 65 chr11 124325195 124325344 -24458128 + L2 LINE L2 3114 3249 -64 252 346 92 23 chr11 124326824 124326954 -24456518 - L3b LINE CR1 -26 1557 1419 228 311 67 34 chr11 124326973 124327092 -24456380 - L2 LINE L2 0 3313 3191 710 286 42 14 chr11 124327402 124327619 -24455853 + MIR SINE MIR 27 249 -13 1766 169 7 13 chr11 124327735 124327855 -24455617 + AluJo SINE Alu 1 120 -192 204 0 83 0 chr11 124327855 124327891 -24455581 + A-rich Low_complexity Low_complexity 1 39 0 1766 169 7 13 chr11 124327891 124328078 -24455394 + AluJo SINE Alu 120 306 -6 456 323 70 58 chr11 124328767 124329298 -24454174 - L2 LINE L2 -1 3271 2734 285 256 49 12 chr11 124329321 124329403 -24454069 - L2 LINE L2 -941 2373 2289 407 276 13 70 chr11 124330473 124330515 -24452957 - MIR SINE MIR -21 241 198 3342 146 33 8 chr11 124330515 124330679 -24452793 + MER1A DNA MER1_type 1 159 -2541 198 0 0 0 chr11 124330679 124330701 -24452771 + (CAG)n Simple_repeat Simple_repeat 2 23 0 3342 146 33 8 chr11 124330701 124331050 -24452422 + MER1A DNA MER1_type 159 527 0 407 276 13 70 chr11 124331050 124331163 -24452309 - MIR SINE MIR -64 198 95 872 224 13 48 chr11 124331207 124331435 -24452037 + MIR SINE MIR 36 255 -7 1252 277 42 49 chr11 124331443 124332002 -24451470 - L2 LINE L2 -5 3308 2739 4086 164 44 14 chr11 124332002 124332373 -24451099 + L1MB7 LINE L1 5218 5576 -608 1952 96 0 8 chr11 124332373 124332624 -24450848 + AluSc SINE Alu 46 294 -15 4086 164 44 14 chr11 124332624 124333098 -24450374 + L1MB7 LINE L1 5576 6089 -95 1502 126 0 4 chr11 124333107 124333345 -24450127 - Tigger5 DNA MER2_type -2 2321 2085 230 134 0 119 chr11 124333423 124333490 -24449982 + L1MB7 LINE L1 6112 6170 -14 324 200 0 0 chr11 124333571 124333641 -24449831 + (CA)n Simple_repeat Simple_repeat 1 70 0 2859 116 16 25 chr11 124333654 124334086 -24449386 - MSTA LTR MaLR 0 428 1 1665 153 0 0 chr11 124334095 124334357 -24449115 + MER7A DNA MER2_type 15 274 -72 292 258 0 0 chr11 124334541 124334603 -24448869 + MER7A DNA MER2_type 284 345 -1 241 320 13 0 chr11 124334603 124334681 -24448791 + (CA)n Simple_repeat Simple_repeat 2 80 0 436 277 0 0 chr11 124334714 124334808 -24448664 - L2 LINE L2 -564 2750 2657 717 287 122 36 chr11 124334808 124335302 -24448170 - MLT1H LTR MaLR -13 536 1 280 244 122 0 chr11 124335833 124335915 -24447557 - L2 LINE L2 -14 3258 3167 22 0 0 0 chr11 124337867 124337889 -24445583 + AT_rich Low_complexity Low_complexity 1 22 0 244 354 0 0 chr11 124338472 124338537 -24444935 + MIR SINE MIR 9 73 -189 255 360 88 8 chr11 124339462 124339587 -24443885 - L2 LINE L2 0 3313 3179 212 350 24 24 chr11 124339631 124339754 -24443718 - MIR SINE MIR -40 222 100 191 86 0 29 chr11 124340280 124340315 -24443157 + (TC)n Simple_repeat Simple_repeat 2 35 0 412 108 0 0 chr11 124340555 124340620 -24442852 - Alu SINE Alu -4 308 244 1755 168 11 48 chr11 124341408 124341759 -24441713 - L1MC1 LINE L1 0 6333 5996 260 355 91 0 chr11 124342407 124342528 -24440944 + MIR3 SINE MIR 28 159 -49 184 296 125 23 chr11 124342598 124342686 -24440786 + MIR SINE MIR 107 203 -59 2663 58 0 0 chr11 124342688 124342999 -24440473 + AluY SINE Alu 1 311 0 347 275 156 6 chr11 124343268 124343435 -24440037 - MIR SINE MIR -15 247 56 237 65 0 0 chr11 124344083 124344114 -24439358 + (GGA)n Simple_repeat Simple_repeat 1 31 0 317 223 47 101 chr11 124344579 124344727 -24438745 + HAL1b LINE L1 1207 1346 -2 2286 188 28 7 chr11 124345802 124346260 -24437212 + L1MB7 LINE L1 5648 6115 -69 776 170 106 14 chr11 124346263 124346404 -24437068 + FRAM SINE Alu 1 154 -22 243 104 0 21 chr11 124346440 124346488 -24436984 + L1MB7 LINE L1 6122 6168 -16 2026 119 53 3 chr11 124346996 124347281 -24436191 - AluSx SINE Alu -13 299 1 2599 47 0 7 chr11 124347970 124348271 -24435201 + AluY SINE Alu 1 299 -12 297 251 175 66 chr11 124349087 124349270 -24434202 - MIR3 SINE MIR -1 207 5 413 299 6 78 chr11 124350051 124350218 -24433254 + MER5B DNA MER1_type 13 167 -11 341 22 22 0 chr11 124350423 124350469 -24433003 + (CA)n Simple_repeat Simple_repeat 2 48 0 1816 150 0 7 chr11 124350473 124350759 -24432713 - AluSx SINE Alu -28 284 1 189 0 0 0 chr11 124351118 124351139 -24432333 + (T)n Simple_repeat Simple_repeat 1 21 0 222 236 125 42 chr11 124352364 124352436 -24431036 - L2 LINE L2 -1 3271 3194 608 311 152 23 chr11 124352574 124353442 -24430030 - L2 LINE L2 0 3313 2331 2137 138 3 0 chr11 124353947 124354252 -24429220 - AluSx SINE Alu -6 306 1 246 128 0 0 chr11 124354273 124354312 -24429160 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 193 176 0 0 chr11 124354432 124354466 -24429006 - MIR SINE MIR -76 132 99 2330 112 3 3 chr11 124354759 124355071 -24428401 + AluSx SINE Alu 1 312 0 189 0 0 0 chr11 124355196 124355217 -24428255 + (A)n Simple_repeat Simple_repeat 1 21 0 191 302 105 23 chr11 124355803 124355889 -24427583 + L3b LINE CR1 1340 1432 -151 305 248 122 35 chr11 124356080 124356264 -24427208 + MIR3 SINE MIR 7 205 -57 365 259 113 29 chr11 124357306 124357445 -24426027 + MIR SINE MIR 4 152 -62 2181 126 0 19 chr11 124357596 124357905 -24425567 - AluSx SINE Alu -9 303 1 186 43 0 0 chr11 124358754 124358777 -24424695 + (CCCCCA)n Simple_repeat Simple_repeat 2 24 0 1234 80 31 12 chr11 124360944 124361107 -24422365 + AluSq SINE Alu 37 202 -111 807 123 110 27 chr11 124361116 124361262 -24422210 + AluSg/x SINE Alu 154 311 -1 360 268 163 13 chr11 124361270 124361423 -24422049 + MIR SINE MIR 47 222 -40 280 271 165 18 chr11 124361668 124361838 -24421634 - MARNA DNA Mariner -122 464 270 183 42 0 0 chr11 124362136 124362160 -24421312 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 191 246 0 53 chr11 124362235 124362292 -24421180 + MIR SINE MIR 22 75 -187 180 77 0 0 chr11 124362572 124362598 -24420874 + (TC)n Simple_repeat Simple_repeat 2 27 0 546 220 147 0 chr11 124363067 124363217 -24420255 - MIR3 SINE MIR -7 201 30 447 291 37 22 chr11 124363619 124363753 -24419719 - L2 LINE L2 0 3272 3137 268 326 69 77 chr11 124364018 124364130 -24419342 + MIR SINE MIR 3 114 -148 1549 204 14 7 chr11 124364130 124364410 -24419062 + AluJo SINE Alu 1 282 -30 195 42 0 0 chr11 124364419 124364443 -24419029 + (CAA)n Simple_repeat Simple_repeat 3 26 0 268 326 69 77 chr11 124364443 124364571 -24418901 + MIR SINE MIR 122 251 -11 184 258 48 16 chr11 124364601 124364663 -24418809 - L2 LINE L2 -534 2780 2717 21 36 0 0 chr11 124366300 124366328 -24417144 + AT_rich Low_complexity Low_complexity 1 28 0 491 260 83 6 chr11 124367271 124367440 -24416032 + MER112 DNA MER1_type 28 209 -51 246 261 76 33 chr11 124367492 124367584 -24415888 - L2 LINE L2 -4 3309 3214 200 256 0 0 chr11 124367617 124367660 -24415812 + (TG)n Simple_repeat Simple_repeat 2 44 0 300 308 71 59 chr11 124368577 124368746 -24414726 + L2 LINE L2 3137 3307 -6 * 356 191 202 0 chr11 124368730 124368824 -24414648 - MIR SINE MIR 0 262 150 560 92 0 0 chr11 124368964 124369040 -24414432 + MADE1 DNA Mariner 1 76 -4 243 290 32 11 chr11 124369176 124369269 -24414203 + MIR SINE MIR 48 142 -120 286 313 0 52 chr11 124369815 124369949 -24413523 + L2 LINE L2 2721 2847 -467 260 321 92 18 chr11 124369964 124370073 -24413399 + L2 LINE L2 3151 3267 -5 1937 164 3 3 chr11 124370269 124370573 -24412899 - AluSx SINE Alu -8 304 1 188 268 0 98 chr11 124371572 124371654 -24411818 + L2 LINE L2 3153 3226 -46 1490 175 8 0 chr11 124373251 124373523 -24409949 + AluJb SINE Alu 34 307 0 288 77 0 0 chr11 124373752 124373791 -24409681 + (TCCC)n Simple_repeat Simple_repeat 4 42 0 215 287 0 81 chr11 124374796 124374883 -24408589 + MIR SINE MIR 107 186 -76 2551 61 3 6 chr11 124376185 124376496 -24406976 + AluY SINE Alu 1 310 -1 362 381 34 0 chr11 124376774 124376921 -24406551 - MER91A DNA MER1_type 0 196 45 2475 66 0 22 chr11 124377392 124377710 -24405762 - AluY SINE Alu 0 311 1 2895 172 6 11 chr11 124379098 124379638 -24403834 + L1MB3 LINE L1 5644 6180 -3 1742 185 0 14 chr11 124383147 124383454 -24400018 - AluJb SINE Alu 0 303 1 207 0 0 0 chr11 124383466 124383489 -24399983 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 422 306 118 21 chr11 124383681 124383910 -24399562 + MIR SINE MIR 9 256 -6 2075 108 3 7 chr11 124387394 124387689 -24395783 - AluSx SINE Alu -18 294 1 1982 135 0 10 chr11 124388619 124388923 -24394549 - AluSx SINE Alu -11 301 1 281 289 13 0 chr11 124389295 124389371 -24394101 - MIR SINE MIR -128 134 58 232 313 0 52 chr11 124389482 124389578 -24393894 - L3b LINE CR1 -192 1391 1301 210 91 0 0 chr11 124390131 124390164 -24393308 + (TTA)n Simple_repeat Simple_repeat 1 33 0 231 36 0 0 chr11 124393304 124393332 -24390140 + (TG)n Simple_repeat Simple_repeat 1 28 0 238 225 25 25 chr11 124394554 124394634 -24388838 + GA-rich Low_complexity Low_complexity 1 80 0 1463 188 0 41 chr11 124394906 124395226 -24388246 - AluJo SINE Alu -5 307 1 255 314 69 20 chr11 124395680 124395782 -24387690 - L2 LINE L2 -6 3307 3201 2160 104 0 10 chr11 124396827 124397134 -24386338 - AluJb SINE Alu -8 304 1 189 0 0 0 chr11 124397493 124397514 -24385958 + (T)n Simple_repeat Simple_repeat 1 21 0 224 236 125 42 chr11 124398739 124398811 -24384661 - L2 LINE L2 -1 3271 3194 611 309 152 24 chr11 124398949 124399818 -24383654 - L2 LINE L2 0 3313 2331 1964 141 3 0 chr11 124400323 124400628 -24382844 - AluSx SINE Alu -6 306 1 246 128 0 0 chr11 124400649 124400688 -24382784 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 191 176 0 0 chr11 124400808 124400842 -24382630 - MIR SINE MIR -76 132 99 2097 122 3 3 chr11 124401135 124401446 -24382026 + AluSx SINE Alu 1 311 -1 354 143 0 0 chr11 124401483 124401546 -24381926 + (TG)n Simple_repeat Simple_repeat 2 64 0 370 303 44 36 chr11 124401837 124402048 -24381424 - MIR SINE MIR -12 250 34 674 206 194 0 chr11 124403304 124403474 -24379998 + MER63A DNA MER1_type 4 206 -4 913 275 9 5 chr11 124403693 124403911 -24379561 - MIR SINE MIR -41 221 3 1620 219 24 24 chr11 124405025 124405399 -24378073 - MLT1A2 LTR MaLR 0 374 1 259 291 25 0 chr11 124405621 124405700 -24377772 - L1MC4 LINE L1 -1343 6699 6619 263 35 70 18 chr11 124406684 124406741 -24376731 + A-rich Low_complexity Low_complexity 1 60 0 401 183 10 59 chr11 124407377 124407508 -24375964 - L1MD3 LINE L1 -2 8040 7905 236 306 16 65 chr11 124407514 124407638 -24375834 - MIR SINE MIR -67 195 78 401 278 75 15 chr11 124409319 124409498 -24373974 + MER5B DNA MER1_type 1 178 0 198 167 0 0 chr11 124409534 124409570 -24373902 + (CA)n Simple_repeat Simple_repeat 2 37 0 815 279 31 16 chr11 124410423 124410677 -24372795 + MIR SINE MIR 1 258 -4 953 186 22 87 chr11 124413160 124413391 -24370081 + MER20 DNA MER1_type 3 218 -1 281 224 0 0 chr11 124414542 124414600 -24368872 + MIR SINE MIR 64 121 -141 194 0 39 0 chr11 124416388 124416414 -24367058 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1666 203 132 41 chr11 124417334 124417797 -24365675 + MLT1D LTR MaLR 1 505 0 369 224 24 12 chr11 124418487 124418572 -24364900 - MIR SINE MIR -63 145 60 210 233 83 0 chr11 124419011 124419071 -24364401 + L3b LINE CR1 1430 1494 -89 219 328 62 39 chr11 124420548 124420676 -24362796 + L2 LINE L2 3134 3264 -8 2269 96 0 10 chr11 124420718 124421032 -24362440 - AluSx SINE Alu -1 311 1 342 0 0 0 chr11 124421668 124421706 -24361766 + (TG)n Simple_repeat Simple_repeat 2 39 0 344 288 163 47 chr11 124423538 124423753 -24359719 - MIR SINE MIR -5 257 18 728 232 85 6 chr11 124423782 124423959 -24359513 + MIR SINE MIR 63 253 -9 262 360 72 0 chr11 124425293 124425404 -24358068 - L2 LINE L2 -29 3243 3125 291 71 0 0 chr11 124426219 124426261 -24357211 + (CA)n Simple_repeat Simple_repeat 2 43 0 3948 130 42 6 chr11 124427218 124427857 -24355615 + L1MB7 LINE L1 5513 6174 -10 237 349 106 30 chr11 124427860 124428058 -24355414 - L2 LINE L2 -15 3298 3086 202 238 161 63 chr11 124428383 124428526 -24354946 + MIR SINE MIR 28 184 -78 2028 121 3 10 chr11 124428600 124428906 -24354566 + AluSx SINE Alu 1 304 -8 454 36 0 0 chr11 124430374 124430430 -24353042 + (TTCC)n Simple_repeat Simple_repeat 2 57 0 558 168 0 0 chr11 124430430 124430543 -24352929 + CT-rich Low_complexity Low_complexity 1 113 0 2125 121 0 0 chr11 124430543 124430849 -24352623 - AluY SINE Alu -2 309 4 330 115 0 0 chr11 124430923 124430975 -24352497 + (TG)n Simple_repeat Simple_repeat 2 53 0 430 286 107 7 chr11 124431192 124431332 -24352140 - MIR3 SINE MIR -26 182 29 213 294 94 35 chr11 124432017 124432102 -24351370 - L2 LINE L2 -30 3242 3153 857 143 0 16 chr11 124432412 124432538 -24350934 + FLAM_C SINE Alu 3 126 -7 230 209 158 115 chr11 124435890 124436029 -24347443 - MIR3 SINE MIR -59 149 5 226 295 47 81 chr11 124437866 124438015 -24345457 - L2 LINE L2 -4 3268 3125 466 275 102 25 chr11 124439298 124439534 -24343938 + MIR SINE MIR 2 255 -7 361 254 74 8 chr11 124440690 124440812 -24342660 + MIR SINE MIR 72 201 -61 307 193 18 0 chr11 124440858 124440915 -24342557 + L2 LINE L2 3254 3311 -2 24 32 0 0 chr11 124441975 124442006 -24341466 + GC_rich Low_complexity Low_complexity 1 31 0 314 245 141 65 chr11 124443415 124443599 -24339873 - L2 LINE L2 -17 3296 3099 182 33 67 0 chr11 124445463 124445493 -24337979 + T-rich Low_complexity Low_complexity 2 33 0 296 44 44 0 chr11 124447081 124447126 -24336346 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 241 222 0 63 chr11 124447534 124447597 -24335875 + L2 LINE L2 3214 3272 0 463 208 94 47 chr11 124447626 124447775 -24335697 - MER69A DNA AcHobo -3 174 19 378 0 0 0 chr11 124448257 124448299 -24335173 + (TG)n Simple_repeat Simple_repeat 2 43 0 264 30 0 0 chr11 124449268 124449301 -24334171 + (T)n Simple_repeat Simple_repeat 1 33 0 180 0 0 0 chr11 124449424 124449444 -24334028 + (T)n Simple_repeat Simple_repeat 1 20 0 243 245 108 50 chr11 124450030 124450169 -24333303 + L2 LINE L2 3083 3229 -84 343 239 130 0 chr11 124450349 124450441 -24333031 + L2 LINE L2 3209 3312 -1 583 243 208 0 chr11 124450482 124450689 -24332783 - MIR SINE MIR -11 251 5 765 262 74 9 chr11 124454376 124454605 -24328867 - MIR SINE MIR -6 256 13 192 40 0 0 chr11 124454891 124454916 -24328556 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 193 312 203 0 chr11 124456102 124456240 -24327232 - MIR3 SINE MIR -23 185 20 265 262 0 0 chr11 124456377 124456438 -24327034 + MIR SINE MIR 74 134 -128 1156 138 0 0 chr11 124456440 124456599 -24326873 + AluSx SINE Alu 1 159 -153 267 266 89 37 chr11 124456992 124457117 -24326355 + MIR SINE MIR 22 154 -58 340 246 119 8 chr11 124457376 124457502 -24325970 - MIR SINE MIR 0 262 123 1001 98 8 0 chr11 124457502 124457634 -24325838 - AluSg/x SINE Alu -16 296 164 396 59 0 0 chr11 124458020 124458071 -24325401 + (TG)n Simple_repeat Simple_repeat 1 51 0 237 304 179 18 chr11 124458741 124458853 -24324619 - MIR3 SINE MIR -37 171 42 209 77 0 0 chr11 124459167 124459193 -24324279 - L2 LINE L2 -25 3247 3222 2022 79 8 8 chr11 124459326 124459591 -24323881 - AluSp SINE Alu -48 265 1 271 170 0 4 chr11 124459837 124459892 -24323580 - Alu SINE Alu -11 290 247 755 303 35 16 chr11 124460299 124460553 -24322919 - MIR SINE MIR 0 262 4 195 290 71 52 chr11 124460852 124461007 -24322465 - MIR3 SINE MIR -48 160 3 336 94 0 0 chr11 124461297 124461350 -24322122 + (GA)n Simple_repeat Simple_repeat 1 53 0 181 306 9 93 chr11 124462333 124462441 -24321031 + L2 LINE L2 3155 3253 -19 467 331 15 0 chr11 124462790 124462923 -24320549 - L2 LINE L2 -1 3271 3137 352 347 52 6 chr11 124463342 124463515 -24319957 - MIR SINE MIR -80 182 2 315 350 32 13 chr11 124463594 124463773 -24319699 - MIR SINE MIR -57 205 25 511 291 16 65 chr11 124463997 124464093 -24319379 + L2 LINE L2 3015 3114 -199 2001 145 7 0 chr11 124464093 124464399 -24319073 - AluSq SINE Alu 0 308 1 511 291 16 65 chr11 124464399 124464548 -24318924 + L2 LINE L2 3114 3249 -64 252 346 92 23 chr11 124466029 124466159 -24317313 - L3b LINE CR1 -26 1557 1419 228 311 67 34 chr11 124466178 124466297 -24317175 - L2 LINE L2 0 3313 3191 710 286 42 14 chr11 124466607 124466824 -24316648 + MIR SINE MIR 27 249 -13 1766 169 7 13 chr11 124466940 124467060 -24316412 + AluJo SINE Alu 1 120 -192 204 0 83 0 chr11 124467060 124467096 -24316376 + A-rich Low_complexity Low_complexity 1 39 0 1766 169 7 13 chr11 124467096 124467283 -24316189 + AluJo SINE Alu 120 306 -6 474 308 76 67 chr11 124467973 124468505 -24314967 - L2 LINE L2 -1 3271 2734 285 256 49 12 chr11 124468528 124468610 -24314862 - L2 LINE L2 -941 2373 2289 392 282 13 70 chr11 124469679 124469721 -24313751 - MIR SINE MIR -21 241 198 3273 154 33 8 chr11 124469721 124469885 -24313587 + MER1A DNA MER1_type 1 159 -2541 198 0 0 0 chr11 124469885 124469907 -24313565 + (CAG)n Simple_repeat Simple_repeat 2 23 0 3273 154 33 8 chr11 124469907 124470256 -24313216 + MER1A DNA MER1_type 159 527 0 392 282 13 70 chr11 124470256 124470369 -24313103 - MIR SINE MIR -64 198 95 872 224 13 48 chr11 124470413 124470641 -24312831 + MIR SINE MIR 36 255 -7 1263 275 42 49 chr11 124470649 124471208 -24312264 - L2 LINE L2 -5 3308 2739 4069 165 44 14 chr11 124471208 124471579 -24311893 + L1MB7 LINE L1 5218 5576 -608 2027 83 0 8 chr11 124471579 124471831 -24311641 + AluSc SINE Alu 46 295 -14 4069 165 44 14 chr11 124471831 124472305 -24311167 + L1MB7 LINE L1 5576 6089 -95 1478 134 0 4 chr11 124472314 124472552 -24310920 - Tigger5 DNA MER2_type -2 2321 2085 230 134 0 119 chr11 124472630 124472697 -24310775 + L1MB7 LINE L1 6112 6170 -14 360 164 0 0 chr11 124472785 124472852 -24310620 + (CA)n Simple_repeat Simple_repeat 2 68 0 2821 118 16 25 chr11 124472865 124473297 -24310175 - MSTA LTR MaLR 0 428 1 1651 157 0 0 chr11 124473306 124473568 -24309904 + MER7A DNA MER2_type 15 274 -72 292 258 0 0 chr11 124473752 124473814 -24309658 + MER7A DNA MER2_type 284 345 -1 241 320 13 0 chr11 124473814 124473892 -24309580 + (CA)n Simple_repeat Simple_repeat 2 80 0 452 266 0 0 chr11 124473925 124474019 -24309453 - L2 LINE L2 -564 2750 2657 728 287 122 36 chr11 124474019 124474513 -24308959 - MLT1H LTR MaLR -13 536 1 202 284 77 87 chr11 124474663 124474846 -24308626 - MIR3 SINE MIR -19 189 9 265 271 93 28 chr11 124475044 124475151 -24308321 - L2 LINE L2 -14 3258 3145 22 0 0 0 chr11 124477078 124477100 -24306372 + AT_rich Low_complexity Low_complexity 1 22 0 244 354 0 0 chr11 124477683 124477748 -24305724 + MIR SINE MIR 9 73 -189 255 360 88 8 chr11 124478695 124478820 -24304652 - L2 LINE L2 0 3313 3179 190 323 52 21 chr11 124478889 124478985 -24304487 - MIR SINE MIR -64 198 100 183 139 0 0 chr11 124479509 124479545 -24303927 + (TC)n Simple_repeat Simple_repeat 2 37 0 371 92 0 32 chr11 124479791 124479862 -24303610 - Alu SINE Alu 0 301 243 1772 165 11 48 chr11 124480640 124480991 -24302481 - L1MC1 LINE L1 0 6333 5996 268 355 91 0 chr11 124481639 124481760 -24301712 + MIR3 SINE MIR 28 159 -49 184 296 125 23 chr11 124481830 124481918 -24301554 + MIR SINE MIR 107 203 -59 2684 55 0 0 chr11 124481920 124482231 -24301241 + AluY SINE Alu 1 311 0 332 281 156 6 chr11 124482500 124482667 -24300805 - MIR SINE MIR -15 247 56 237 65 0 0 chr11 124483315 124483346 -24300126 + (GGA)n Simple_repeat Simple_repeat 1 31 0 317 223 47 101 chr11 124483811 124483959 -24299513 + HAL1b LINE L1 1207 1346 -2 2273 190 28 7 chr11 124485033 124485491 -24297981 + L1MB7 LINE L1 5648 6115 -69 778 143 0 17 chr11 124485516 124485635 -24297837 + FRAM SINE Alu 38 154 -22 243 104 0 21 chr11 124485671 124485719 -24297753 + L1MB7 LINE L1 6122 6168 -16 2044 115 52 3 chr11 124486227 124486513 -24296959 - AluSx SINE Alu -12 300 1 2685 37 0 3 chr11 124487201 124487501 -24295971 + AluY SINE Alu 1 299 -12 297 251 175 66 chr11 124488317 124488500 -24294972 - MIR3 SINE MIR -1 207 5 413 299 6 78 chr11 124489281 124489448 -24294024 + MER5B DNA MER1_type 13 167 -11 392 0 21 0 chr11 124489653 124489701 -24293771 + (CA)n Simple_repeat Simple_repeat 2 50 0 2237 106 0 0 chr11 124489703 124489987 -24293485 - AluSx SINE Alu -28 284 1 1015 118 0 0 chr11 124489987 124490122 -24293350 - AluSq/x SINE Alu -177 135 1 386 331 17 39 chr11 124490375 124490553 -24292919 + MIR SINE MIR 15 188 -74 350 384 7 0 chr11 124492019 124492157 -24291315 + MIR SINE MIR 53 191 -71 315 0 0 0 chr11 124492236 124492271 -24291201 + (TG)n Simple_repeat Simple_repeat 1 35 0 2144 95 3 14 chr11 124493000 124493294 -24290178 - AluSx SINE Alu -9 303 13 616 308 5 49 chr11 124493405 124493629 -24289843 + MIR SINE MIR 49 262 0 192 40 0 0 chr11 124494396 124494421 -24289051 + (GAAA)n Simple_repeat Simple_repeat 1 25 0 471 313 34 28 chr11 124494558 124494734 -24288738 - MIR3 SINE MIR -22 186 10 633 252 66 53 chr11 124495788 124496014 -24287458 - MIR SINE MIR -26 236 8 226 405 0 0 chr11 124496271 124496355 -24287117 + L2 LINE L2 3186 3269 -3 269 248 205 17 chr11 124496521 124496638 -24286834 - MIR SINE MIR -35 227 89 1575 123 0 13 chr11 124496675 124496903 -24286569 - AluSg/x SINE Alu -2 308 84 180 0 0 0 chr11 124496908 124496928 -24286544 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 229 282 153 16 chr11 124497666 124497790 -24285682 + L3b LINE CR1 1319 1459 -124 459 332 166 41 chr11 124498861 124499746 -24283726 - L2 LINE L2 0 3272 2246 180 111 0 0 chr11 124501096 124501123 -24282349 + (TG)n Simple_repeat Simple_repeat 1 27 0 246 325 49 24 chr11 124501405 124501528 -24281944 + L3b LINE CR1 1327 1452 -131 376 233 0 0 chr11 124502639 124502712 -24280760 + L2 LINE L2 3139 3211 -61 1637 335 71 40 chr11 124505638 124507095 -24276377 - L2 LINE L2 0 3272 1775 2016 177 74 0 chr11 124507447 124507814 -24275658 - MSTD LTR MaLR 0 396 3 610 300 50 30 chr11 124507935 124508135 -24275337 - MIR SINE MIR -39 223 20 206 299 134 8 chr11 124508133 124508260 -24275212 + L2 LINE L2 3171 3313 0 * 190 298 48 36 chr11 124509455 124509539 -24273933 - MIR3 SINE MIR -32 176 92 318 275 158 33 chr11 124509566 124509686 -24273786 - L2 LINE L2 -5 3308 3174 903 153 16 26 chr11 124509920 124510110 -24273362 - L1MB3 LINE L1 -1 6182 5995 2032 216 29 14 chr11 124510122 124510604 -24272868 - Charlie4a DNA MER1_type 0 508 20 256 186 62 31 chr11 124512927 124513024 -24270448 + (TCTCTG)n Simple_repeat Simple_repeat 1 100 0 183 258 0 0 chr11 124513321 124513352 -24270120 - L2 LINE L2 -25 3288 3258 684 281 28 17 chr11 124513921 124514099 -24269373 - MIR3 SINE MIR -5 203 24 286 204 20 0 chr11 124514673 124514771 -24268701 + (GGCTG)n Simple_repeat Simple_repeat 2 101 0 354 169 0 0 chr11 124515165 124515230 -24268242 + (CA)n Simple_repeat Simple_repeat 1 65 0 1095 84 11 17 chr11 124517702 124517881 -24265591 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 304 347 84 47 chr11 124518821 124519011 -24264461 - L2 LINE L2 0 3272 3076 446 280 69 32 chr11 124519131 124519320 -24264152 + MER91A DNA MER1_type 1 196 0 224 256 26 26 chr11 124519383 124519461 -24264011 - MIR SINE MIR -72 136 59 196 346 48 34 chr11 124520307 124520403 -24263069 + L2 LINE L2 2636 2729 -585 1624 210 52 6 chr11 124520403 124520751 -24262721 - MLT1A1 LTR MaLR -1 364 1 196 346 48 34 chr11 124520751 124520862 -24262610 + L2 LINE L2 2729 2846 -468 226 269 241 55 chr11 124520914 124521167 -24262305 + L2 LINE L2 2972 3271 -1 501 261 127 19 chr11 124521979 124522136 -24261336 + MIR SINE MIR 53 226 -36 319 333 107 33 chr11 124522903 124523146 -24260326 + L2 LINE L2 2700 2960 -354 400 276 19 0 chr11 124523185 124523290 -24260182 + L2 LINE L2 3206 3312 -1 550 239 106 58 chr11 124523379 124523429 -24260043 + MIR SINE MIR 39 85 -177 1613 132 149 10 chr11 124523429 124523725 -24259747 + MER1B DNA MER1_type 1 337 0 550 239 106 58 chr11 124523725 124523862 -24259610 + MIR SINE MIR 85 235 -27 440 324 7 20 chr11 124524654 124524802 -24258670 - MER5A DNA MER1_type -43 146 1 237 246 0 0 chr11 124526714 124526775 -24256697 + T-rich Low_complexity Low_complexity 1 61 0 336 311 108 7 chr11 124528402 124528550 -24254922 + MIR SINE MIR 29 191 -71 382 322 49 49 chr11 124528666 124528871 -24254601 - L2 LINE L2 -181 3091 2887 327 176 255 0 chr11 124529656 124529758 -24253714 - MER117 DNA MER1_type -50 147 20 2235 89 7 10 chr11 124529996 124530288 -24253184 - AluSq SINE Alu -18 295 5 787 233 104 16 chr11 124530394 124530587 -24252885 - MER63A DNA MER1_type 0 210 1 2320 108 3 0 chr11 124531270 124531575 -24251897 + AluSx SINE Alu 1 306 -6 275 364 52 19 chr11 124531795 124531949 -24251523 - L3 LINE CR1 -48 1529 1371 414 270 150 30 chr11 124532322 124532522 -24250950 + MIR SINE MIR 21 244 -18 267 360 72 0 chr11 124533611 124533722 -24249750 + L2 LINE L2 3125 3243 -29 730 232 85 6 chr11 124535206 124535383 -24248089 - MIR SINE MIR -9 253 63 341 288 163 47 chr11 124535412 124535627 -24247845 + MIR SINE MIR 18 257 -5 342 0 0 0 chr11 124537459 124537497 -24245975 + (CA)n Simple_repeat Simple_repeat 2 39 0 2422 96 0 10 chr11 124538133 124538446 -24245026 + AluSx SINE Alu 1 310 -2 196 318 62 31 chr11 124538486 124538615 -24244857 - L2 LINE L2 -8 3305 3173 486 208 94 47 chr11 124539149 124539298 -24244174 + MER69A DNA AcHobo 19 174 -3 226 222 0 63 chr11 124539327 124539390 -24244082 - L2 LINE L2 0 3272 3214 296 44 44 0 chr11 124539801 124539846 -24243626 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 234 0 0 0 chr11 124541143 124541169 -24242303 + (A)n Simple_repeat Simple_repeat 1 26 0 582 222 170 18 chr11 124541423 124541594 -24241878 - MER3 DNA MER1_type -4 205 9 218 227 0 0 chr11 124542012 124542056 -24241416 + A-rich Low_complexity Low_complexity 1 44 0 303 113 0 0 chr11 124543123 124543176 -24240296 + (GGA)n Simple_repeat Simple_repeat 2 54 0 225 200 0 20 chr11 124544827 124544877 -24238595 + (TG)n Simple_repeat Simple_repeat 2 50 0 221 132 0 19 chr11 124545528 124545581 -24237891 + (TA)n Simple_repeat Simple_repeat 1 52 0 183 139 0 0 chr11 124546477 124546513 -24236959 + (TA)n Simple_repeat Simple_repeat 1 36 0 198 171 26 40 chr11 124546793 124546869 -24236603 + CT-rich Low_complexity Low_complexity 4 78 0 204 125 0 0 chr11 124547098 124547130 -24236342 + (A)n Simple_repeat Simple_repeat 1 32 0 212 130 22 0 chr11 124547390 124547436 -24236036 + T-rich Low_complexity Low_complexity 5 51 0 345 213 28 37 chr11 124547657 124547765 -24235707 - L2 LINE L2 -19 3294 3188 194 297 31 11 chr11 124547791 124547882 -24235590 - MIR3 SINE MIR -105 103 15 306 275 43 7 chr11 124548719 124548857 -24234615 + CT-rich Low_complexity Low_complexity 3 145 0 210 37 0 0 chr11 124549044 124549071 -24234401 + (CA)n Simple_repeat Simple_repeat 2 28 0 713 326 69 43 chr11 124549931 124550569 -24232903 + L2 LINE L2 2629 3272 0 213 69 0 0 chr11 124551551 124551580 -24231892 - MIR SINE MIR -62 146 118 2453 56 0 7 chr11 124552681 124552994 -24230478 + AluSp SINE Alu 1 311 0 1762 108 14 4 chr11 124553570 124553849 -24229623 - L1PA11 LINE L1 -1 6173 5892 205 242 73 81 chr11 124553977 124554101 -24229371 + MIR3 SINE MIR 86 208 0 350 259 0 0 chr11 124557171 124557256 -24226216 - L2 LINE L2 -61 3252 3168 230 325 49 24 chr11 124558355 124558478 -24224994 - L3b LINE CR1 -131 1452 1327 180 111 0 0 chr11 124558760 124558787 -24224685 + (CA)n Simple_repeat Simple_repeat 1 27 0 442 347 65 5 chr11 124560128 124560344 -24223128 + L2 LINE L2 2246 2474 -840 374 333 118 55 chr11 124560407 124561013 -24222459 + L2 LINE L2 2597 3272 0 199 290 153 16 chr11 124562083 124562207 -24221265 - L3b LINE CR1 -124 1459 1319 180 0 0 0 chr11 124562946 124562966 -24220506 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 1579 123 0 13 chr11 124562971 124563199 -24220273 + AluSg/x SINE Alu 86 310 -2 246 248 205 17 chr11 124563236 124563353 -24220119 + MIR SINE MIR 89 227 -35 214 405 0 0 chr11 124563519 124563603 -24219869 - L2 LINE L2 -3 3269 3186 585 257 66 53 chr11 124563860 124564086 -24219386 + MIR SINE MIR 8 236 -26 431 329 6 25 chr11 124565158 124565316 -24218156 + MIR3 SINE MIR 32 186 -22 192 40 0 0 chr11 124565453 124565478 -24217994 + (TTTC)n Simple_repeat Simple_repeat 1 25 0 578 313 5 49 chr11 124566246 124566470 -24217002 - MIR SINE MIR 0 262 49 2141 95 3 14 chr11 124566581 124566875 -24216597 + AluSx SINE Alu 13 303 -9 297 0 0 0 chr11 124567599 124567632 -24215840 + (CA)n Simple_repeat Simple_repeat 1 33 0 337 362 14 7 chr11 124567711 124567849 -24215623 - MIR SINE MIR -71 191 53 357 323 16 47 chr11 124569300 124569492 -24213980 - MIR SINE MIR -62 200 15 1022 118 0 0 chr11 124569745 124569880 -24213592 + AluSq/x SINE Alu 1 135 -177 2091 108 11 0 chr11 124569880 124570159 -24213313 + AluSx SINE Alu 1 282 -30 341 22 22 0 chr11 124570163 124570209 -24213263 + (TG)n Simple_repeat Simple_repeat 2 48 0 389 302 17 73 chr11 124570409 124570588 -24212884 - MER5B DNA MER1_type -6 172 4 225 200 0 20 chr11 124570770 124570820 -24212652 + (TG)n Simple_repeat Simple_repeat 2 50 0 221 132 0 19 chr11 124571470 124571523 -24211949 + (TA)n Simple_repeat Simple_repeat 1 52 0 183 139 0 0 chr11 124572416 124572452 -24211020 + (TA)n Simple_repeat Simple_repeat 1 36 0 198 171 26 40 chr11 124572732 124572808 -24210664 + CT-rich Low_complexity Low_complexity 4 78 0 225 94 0 0 chr11 124573037 124573069 -24210403 + (A)n Simple_repeat Simple_repeat 1 32 0 208 184 20 0 chr11 124573325 124573374 -24210098 + T-rich Low_complexity Low_complexity 5 54 0 345 213 28 37 chr11 124573593 124573701 -24209771 - L2 LINE L2 -19 3294 3188 194 297 31 11 chr11 124573727 124573818 -24209654 - MIR3 SINE MIR -105 103 15 310 345 21 11 chr11 124574657 124574831 -24208641 + CT-rich Low_complexity Low_complexity 1 175 0 210 37 0 0 chr11 124574980 124575007 -24208465 + (CA)n Simple_repeat Simple_repeat 2 28 0 658 327 69 43 chr11 124575870 124576503 -24206969 + L2 LINE L2 2629 3267 -5 2855 144 46 43 chr11 124577008 124577617 -24205855 + LTR36 LTR ERV1 1 611 0 785 295 104 8 chr11 124577778 124578171 -24205301 + L2 LINE L2 1497 1927 -1387 4601 168 37 25 chr11 124578201 124579045 -24204427 - MER21B LTR ERV1 -9 854 1 331 292 169 34 chr11 124579050 124579286 -24204186 + L2 LINE L2 1940 2207 -1107 180 0 0 0 chr11 124579598 124579618 -24203854 + (TTA)n Simple_repeat Simple_repeat 2 21 0 445 232 182 23 chr11 124580141 124580291 -24203181 + L2 LINE L2 2799 2924 -389 180 77 0 0 chr11 124580291 124580317 -24203155 + (CCCCCA)n Simple_repeat Simple_repeat 3 28 0 445 232 182 23 chr11 124580317 124580401 -24203071 + L2 LINE L2 2924 3059 -254 1017 210 72 11 chr11 124580401 124580719 -24202753 + MSTD LTR MaLR 1 394 -2 2213 113 0 0 chr11 124580745 124581054 -24202418 + AluSx SINE Alu 1 309 0 277 338 76 38 chr11 124581062 124581219 -24202253 + L2 LINE L2 3117 3279 -34 258 179 49 57 chr11 124581302 124581425 -24202047 - L1MC5 LINE L1 -34 7927 7806 370 294 50 36 chr11 124581477 124581756 -24201716 - L1MC5 LINE L1 -172 7789 7507 2581 59 3 0 chr11 124582251 124582554 -24200918 + AluY SINE Alu 1 304 -7 246 207 30 118 chr11 124582621 124582756 -24200716 - L1MEc LINE L1 -6261 135 13 606 260 21 36 chr11 124582756 124582948 -24200524 - MIR SINE MIR -68 194 6 283 269 40 67 chr11 124583393 124583542 -24199930 + L2 LINE L2 1728 1872 -1442 1141 307 81 19 chr11 124583546 124584077 -24199395 - L1M4 LINE L1 -2990 3156 2593 1747 154 48 66 chr11 124584260 124584539 -24198933 - MLT1B LTR MaLR 0 390 119 1994 140 30 7 chr11 124584539 124584839 -24198633 - AluSx SINE Alu -5 307 1 1747 154 48 66 chr11 124584839 124584954 -24198518 - MLT1B LTR MaLR -271 119 3 2340 103 0 0 chr11 124587321 124587612 -24195860 + AluSx SINE Alu 1 291 -21 221 224 192 56 chr11 124589231 124589356 -24194116 + MIR3 SINE MIR 4 145 -63 208 250 0 49 chr11 124589398 124589542 -24193930 + (TTAGGG)n Simple_repeat Simple_repeat 5 141 0 186 143 0 0 chr11 124589575 124589610 -24193862 + (TTAGGG)n Simple_repeat Simple_repeat 3 37 0 427 203 11 2 chr11 124590594 124590706 -24192766 + MIR SINE MIR 40 150 -65 2218 113 3 3 chr11 124590707 124591017 -24192455 + AluSx SINE Alu 2 311 -1 180 318 50 106 chr11 124591221 124591419 -24192053 - L2 LINE L2 -198 3074 2888 211 180 120 0 chr11 124591564 124591614 -24191858 - L2 LINE L2 -4 3309 3254 2684 161 39 2 chr11 124591795 124592206 -24191266 - MSTB LTR MaLR 0 426 1 320 164 15 0 chr11 124592378 124592445 -24191027 + (TG)n Simple_repeat Simple_repeat 1 68 0 197 320 150 20 chr11 124593100 124593253 -24190219 - L2 LINE L2 -168 3104 2932 283 313 97 0 chr11 124593818 124593952 -24189520 - L2 LINE L2 -10 3262 3116 257 304 47 94 chr11 124595177 124595368 -24188104 - L2 LINE L2 -180 3092 2911 1240 169 14 0 chr11 124595794 124596007 -24187465 + AluJo SINE Alu 85 300 -12 495 273 81 73 chr11 124596147 124596267 -24187205 + L1MC/D LINE L1 5260 5378 -758 1045 276 105 10 chr11 124596267 124596677 -24186795 + MLT1J2 LTR MaLR 1 449 -1 495 273 81 73 chr11 124596677 124596954 -24186518 + L1MC/D LINE L1 5378 5660 -476 1670 150 28 17 chr11 124598247 124598534 -24184938 - AluSx SINE Alu -22 290 1 189 312 140 11 chr11 124598898 124598991 -24184481 - L3 LINE CR1 -780 797 693 410 267 169 29 chr11 124599030 124599202 -24184270 - MIR SINE MIR -6 256 61 246 62 0 0 chr11 124599378 124599410 -24184062 + (A)n Simple_repeat Simple_repeat 1 32 0 231 114 0 0 chr11 124600388 124600423 -24183049 + (TC)n Simple_repeat Simple_repeat 2 36 0 410 293 17 9 chr11 124600591 124600707 -24182765 - L2 LINE L2 0 3313 3197 198 0 0 0 chr11 124601018 124601040 -24182432 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 986 243 110 19 chr11 124601426 124601735 -24181737 + MLT1L LTR MaLR 94 430 -185 39 84 0 0 chr11 124601741 124601836 -24181636 + AT_rich Low_complexity Low_complexity 1 95 0 21 36 0 0 chr11 124602095 124602123 -24181349 + AT_rich Low_complexity Low_complexity 1 28 0 634 217 202 8 chr11 124602130 124602397 -24181075 + Charlie7 DNA MER1_type 1808 2126 -486 1535 180 33 27 chr11 124602399 124602598 -24180874 - L1MC2 LINE L1 -332 6012 5809 1832 98 8 0 chr11 124602598 124602842 -24180630 - AluY SINE Alu -12 299 54 1535 180 33 27 chr11 124602842 124602976 -24180496 - L1MC2 LINE L1 -535 5809 5677 542 238 118 76 chr11 124602989 124603447 -24180025 + Charlie7 DNA MER1_type 2133 2609 -3 1486 181 7 11 chr11 124603459 124603730 -24179742 + AluJo SINE Alu 30 299 -13 3230 127 143 16 chr11 124603819 124604441 -24179031 - L1MC2 LINE L1 -1 6343 5643 389 210 12 0 chr11 124604436 124604517 -24178955 - L1MC2 LINE L1 -917 5229 5148 * 253 75 19 94 chr11 124604520 124604573 -24178899 + LTR14B LTR ERVK 1 49 -559 * 2026 113 100 27 chr11 124604555 124604926 -24178546 + LTR14B LTR ERVK 211 608 0 1005 292 14 72 chr11 124604928 124605474 -24177998 - L1MC2 LINE L1 -996 5150 4669 180 0 0 0 chr11 124605474 124605494 -24177978 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1005 292 14 72 chr11 124605494 124605521 -24177951 - L1MC2 LINE L1 -1477 4669 4642 1990 129 10 26 chr11 124605527 124605837 -24177635 - AluSx SINE Alu -7 305 1 232 246 254 48 chr11 124605915 124606041 -24177431 - MIR3 SINE MIR -41 167 16 436 270 59 53 chr11 124606502 124606857 -24176615 - L1ME4a LINE L1 -1 6120 5764 180 97 0 0 chr11 124607230 124607261 -24176211 + (A)n Simple_repeat Simple_repeat 1 31 0 2940 219 60 9 chr11 124607765 124608520 -24174952 + L1M4 LINE L1 3679 4471 -1675 1768 154 7 17 chr11 124608521 124608813 -24174659 + AluJb SINE Alu 1 289 -23 823 286 65 37 chr11 124608914 124609404 -24174068 - L1MC2 LINE L1 -1857 4289 3786 392 238 9 38 chr11 124609420 124609525 -24173947 + MIR SINE MIR 29 130 -132 456 130 11 130 chr11 124609535 124609712 -24173760 - AluSg/x SINE Alu -26 286 131 399 257 0 10 chr11 124609721 124609822 -24173650 + L1M4 LINE L1 4845 4944 -1202 334 264 24 32 chr11 124609865 124609990 -24173482 + L1M4 LINE L1 4930 5053 -1093 1284 190 95 0 chr11 124609996 124610259 -24173213 + MER49 LTR ERV1 1 288 -635 306 67 0 0 chr11 124610274 124610319 -24173153 + (TG)n Simple_repeat Simple_repeat 2 46 0 355 160 0 6 chr11 124610319 124610397 -24173075 + MER4D LTR ERV1 98 285 -606 1541 200 19 22 chr11 124610411 124610731 -24172741 + MER4D LTR ERV1 568 886 -17 1623 214 67 19 chr11 124610753 124611113 -24172359 + MER21B LTR ERV1 1 377 -486 213 333 62 10 chr11 124612600 124612696 -24170776 - MIR SINE MIR -78 130 30 282 206 0 41 chr11 124612732 124612805 -24170667 - MLT1K LTR MaLR -10 578 509 237 195 12 49 chr11 124612750 124612832 -24170640 - LTR67 LTR ERVL -22 535 457 * 1991 127 38 0 chr11 124616187 124616479 -24166993 - AluSg SINE Alu -7 303 1 2864 264 70 16 chr11 124617942 124619335 -24164137 - L1ME3A LINE L1 -219 5934 4458 1108 300 77 9 chr11 124619463 124620112 -24163360 - L1ME3A LINE L1 -2765 3364 2652 2210 181 8 6 chr11 124620112 124620476 -24162996 - MLT1A1 LTR MaLR 0 365 1 1108 300 77 9 chr11 124620476 124620579 -24162893 - L1ME3A LINE L1 -3477 2652 2557 388 245 49 0 chr11 124620752 124620854 -24162618 - LTR16C LTR ERVL -40 451 345 416 306 74 31 chr11 124620926 124621370 -24162102 - L1MDa LINE L1 -4435 1694 1221 405 194 68 19 chr11 124621374 124621477 -24161995 + MIR SINE MIR 152 259 -3 262 222 16 0 chr11 124621499 124621562 -24161910 + LTR50 LTR ERVL 1 64 -731 372 261 0 22 chr11 124621569 124621661 -24161811 - L1MDa LINE L1 -5025 1094 1005 341 254 109 0 chr11 124621686 124621824 -24161648 + LTR50 LTR ERVL 82 234 -561 347 218 218 64 chr11 124621964 124622230 -24161242 + LTR50 LTR ERVL 481 787 -8 262 136 0 0 chr11 124622241 124622285 -24161187 - L1MEd LINE L1 -4911 1208 1165 2467 64 0 19 chr11 124622442 124622755 -24160717 - AluY SINE Alu -4 307 1 205 191 24 0 chr11 124623057 124623099 -24160373 + CT-rich Low_complexity Low_complexity 3 45 0 1681 190 0 20 chr11 124624660 124624965 -24158507 - AluJo SINE Alu -13 299 1 4441 223 102 83 chr11 124626233 124628125 -24155347 - L1MEc LINE L1 -1922 4293 2367 447 271 32 45 chr11 124628125 124628280 -24155192 + MLT1E LTR MaLR 1 153 -440 4335 144 15 36 chr11 124628283 124629111 -24154361 + L1MC1 LINE L1 5423 6333 0 347 222 19 74 chr11 124629177 124629285 -24154187 + MLT1F1 LTR MaLR 441 567 0 729 236 83 88 chr11 124629329 124629796 -24153676 - L1MEc LINE L1 -4064 2332 1868 373 136 32 0 chr11 124629830 124629913 -24153559 - L1MB2 LINE L1 -2 6181 6079 1850 197 14 19 chr11 124629971 124630332 -24153140 + MLT1A1 LTR MaLR 6 364 -1 473 312 7 0 chr11 124630354 124630508 -24152964 - L1MEc LINE L1 -4576 1820 1666 21 57 0 0 chr11 124630641 124630676 -24152796 + AT_rich Low_complexity Low_complexity 1 35 0 314 323 71 15 chr11 124630748 124630946 -24152526 - HAL1b LINE L1 -659 689 481 1014 171 72 5 chr11 124630981 124631174 -24152298 - AluJo SINE Alu -23 289 84 895 193 47 0 chr11 124631943 124632114 -24151358 + AluJb SINE Alu 131 309 -3 420 185 43 22 chr11 124632290 124632382 -24151090 + MER5A DNA MER1_type 16 109 -80 8081 32 3 0 chr11 124632600 124634043 -24149429 - L1PA5 LINE L1 0 6154 4712 963 321 97 53 chr11 124634446 124635380 -24148092 + L2 LINE L2 2302 3272 0 444 252 10 19 chr11 124636606 124636709 -24146763 + MER81 DNA DNA 12 113 -1 4490 153 36 10 chr11 124636851 124637656 -24145816 - L1MB7 LINE L1 -1 6183 5361 1886 154 0 3 chr11 124638382 124638680 -24144792 + AluJo SINE Alu 9 305 -7 648 244 4 93 chr11 124640391 124640524 -24142948 + MIR SINE MIR 53 159 -103 1599 197 27 7 chr11 124640524 124640824 -24142648 + AluSx SINE Alu 1 306 -6 648 244 4 93 chr11 124640824 124640915 -24142557 + MIR SINE MIR 159 257 -5 1308 195 14 0 chr11 124641491 124641712 -24141760 - MER58A DNA MER1_type 0 224 1 1925 129 35 0 chr11 124641770 124642057 -24141415 - AluSx SINE Alu -12 300 4 1358 191 162 3 chr11 124642059 124642368 -24141104 + MER47A DNA MER2_type 9 366 0 783 89 0 48 chr11 124642533 124642657 -24140815 + AluY SINE Alu 193 310 -1 303 269 78 48 chr11 124642747 124642914 -24140558 - MER112 DNA MER1_type 0 260 89 328 233 12 35 chr11 124643057 124643143 -24140329 - MER112 DNA MER1_type -176 84 1 200 365 16 0 chr11 124643205 124643268 -24140204 - L2 LINE L2 -83 3189 3126 3308 135 18 0 chr11 124644240 124644744 -24138728 + L1PA16 LINE L1 5654 6166 0 396 291 54 54 chr11 124644867 124645015 -24138457 - L2 LINE L2 -2 3270 3123 2004 122 0 7 chr11 124646107 124646385 -24137087 + AluSx SINE Alu 1 276 -36 25 0 0 0 chr11 124646500 124646525 -24136947 + AT_rich Low_complexity Low_complexity 1 25 0 184 366 14 14 chr11 124646601 124646672 -24136800 - MIR3 SINE MIR -43 165 95 * 225 226 204 0 chr11 124646655 124646748 -24136724 + MIR3 SINE MIR 94 205 -3 407 350 172 20 chr11 124647713 124648016 -24135456 - L2 LINE L2 -8 3264 2916 444 215 13 74 chr11 124648041 124648190 -24135282 + LTR16A1 LTR ERVL 6 145 -312 599 250 119 21 chr11 124648374 124648610 -24134862 + LTR16A1 LTR ERVL 174 432 -25 731 178 0 31 chr11 124649012 124649141 -24134331 + FLAM_C SINE Alu 1 125 -8 285 284 68 23 chr11 124649960 124650048 -24133424 - L2 LINE L2 -28 3244 3153 1381 217 26 39 chr11 124650058 124650453 -24133019 + MLT1A1 LTR MaLR 1 360 -5 316 309 76 62 chr11 124650524 124650864 -24132608 - L2 LINE L2 -221 3051 2709 938 128 0 0 chr11 124650975 124651116 -24132356 - L1PA13 LINE L1 -3 6160 6020 5476 112 2 21 chr11 124651116 124651219 -24132253 - L1PA13 LINE L1 -39 6124 6021 2129 128 3 0 chr11 124651219 124651515 -24131957 + AluSq SINE Alu 1 297 -16 5476 112 2 21 chr11 124651515 124652221 -24131251 - L1PA13 LINE L1 -142 6021 5330 1360 62 5 52 chr11 124652236 124652428 -24131044 + L1PA8A LINE L1 5949 6131 0 249 208 0 0 chr11 124652619 124652667 -24130805 + L2 LINE L2 3224 3271 -1 3004 221 40 25 chr11 124653071 124653713 -24129759 + MER82 DNA MER2_type 2 653 0 507 301 66 36 chr11 124653875 124654071 -24129401 - MIR SINE MIR -59 203 2 895 167 0 0 chr11 124655882 124656008 -24127464 + FLAM_C SINE Alu 1 126 -7 2430 102 3 9 chr11 124656510 124656845 -24126627 + L1PB1 LINE L1 5818 6150 -1 2163 134 0 19 chr11 124656882 124657195 -24126277 + AluSx SINE Alu 1 307 -5 376 381 41 7 chr11 124657657 124657804 -24125668 + L2 LINE L2 3099 3250 -22 10774 188 35 47 chr11 124658702 124662458 -24121014 + L1MC1 LINE L1 32 3831 -2779 2030 89 0 12 chr11 124662458 124662715 -24120757 + AluSx SINE Alu 1 254 -58 10774 188 35 47 chr11 124662715 124663413 -24120059 + L1MC1 LINE L1 3831 4536 -2074 2457 86 0 0 chr11 124663413 124663714 -24119758 + AluSg SINE Alu 1 301 -9 10774 188 35 47 chr11 124663714 124665072 -24118400 + L1MC1 LINE L1 4536 5867 -743 2409 134 29 22 chr11 124665041 124665451 -24118021 + L1MC1 LINE L1 6201 6613 0 * 450 321 77 75 chr11 124665724 124666232 -24117240 - MLT1K LTR MaLR -24 564 56 264 323 0 21 chr11 124666670 124666766 -24116706 + MIR SINE MIR 72 165 -97 1174 34 0 27 chr11 124667245 124667391 -24116081 + L1PA4 LINE L1 5737 5878 -277 1303 40 0 0 chr11 124667400 124667548 -24115924 + L1PA4 LINE L1 6005 6152 -3 3184 56 0 3 chr11 124667556 124667934 -24115538 + L1PA5 LINE L1 5770 6146 -8 542 216 44 34 chr11 124668422 124668731 -24114741 - LTR45B LTR ERV1 0 592 305 23 0 0 0 chr11 124669290 124669313 -24114159 + AT_rich Low_complexity Low_complexity 1 23 0 236 240 67 13 chr11 124669488 124669563 -24113909 - MIR3 SINE MIR -10 198 120 275 346 37 29 chr11 124669682 124669818 -24113654 + MER5A DNA MER1_type 45 181 -8 792 239 13 13 chr11 124669818 124669977 -24113495 + FRAM SINE Alu 1 159 -7 283 115 0 0 chr11 124669978 124670030 -24113442 + L1PA15 LINE L1 6113 6164 -1 402 132 70 88 chr11 124670650 124670764 -24112708 - MER112 DNA MER1_type -1 259 148 1811 171 0 10 chr11 124670792 124671085 -24112387 - AluJb SINE Alu -22 290 1 234 62 0 0 chr11 124671107 124671139 -24112333 + (TG)n Simple_repeat Simple_repeat 2 33 0 1109 213 52 0 chr11 124671196 124671445 -24112027 + L1MB1 LINE L1 5913 6174 -15 273 301 189 26 chr11 124671656 124672085 -24111387 - L1ME LINE L1 -299 5822 5324 31 0 0 0 chr11 124672232 124672263 -24111209 + AT_rich Low_complexity Low_complexity 1 31 0 452 217 76 51 chr11 124672266 124672423 -24111049 - LTR12 LTR ERV1 -354 360 200 3418 221 16 28 chr11 124672687 124673423 -24110049 - HERV17 LTR ERV1 -4 8622 504 10875 178 4 3 chr11 124673428 124675206 -24108266 - HERV17 LTR ERV1 -4367 4259 2481 768 125 50 155 chr11 124675458 124675602 -24107870 + MER5A DNA MER1_type 1 120 -69 923 138 8 0 chr11 124675602 124675732 -24107740 - FLAM_C SINE Alu -2 131 1 768 125 50 155 chr11 124675732 124675787 -24107685 + MER5A DNA MER1_type 120 179 -10 2053 102 3 74 chr11 124676675 124677000 -24106472 + AluSq SINE Alu 1 302 -11 871 210 112 65 chr11 124677890 124678031 -24105441 - MER58A DNA MER1_type -2196 224 68 1781 167 0 7 chr11 124678031 124678319 -24105153 - AluJb SINE Alu -26 286 1 871 210 112 65 chr11 124678319 124678391 -24105081 - MER58A DNA MER1_type -2352 68 1 378 143 60 98 chr11 124678482 124678615 -24104857 - Charlie7 DNA MER1_type -49 2563 2436 * 812 258 13 9 chr11 124678609 124678838 -24104634 - Charlie7 DNA MER1_type -1879 733 504 697 239 174 5 chr11 124678851 124679064 -24104408 - MIR SINE MIR -1 261 13 1006 222 57 16 chr11 124679088 124679336 -24104136 - Charlie7 DNA MER1_type -2118 494 237 380 273 45 34 chr11 124679918 124680094 -24103378 - L1MEd LINE L1 -4892 1227 1050 259 326 62 31 chr11 124680095 124680224 -24103248 - MLT1J2 LTR MaLR -55 395 263 315 336 117 7 chr11 124680256 124680393 -24103079 - MLT1J2 LTR MaLR -257 193 42 1683 138 0 95 chr11 124681050 124681375 -24102097 + AluSx SINE Alu 1 294 -18 832 185 0 56 chr11 124681623 124681801 -24101671 - AluJb SINE Alu -11 301 134 1912 131 7 20 chr11 124681801 124682107 -24101365 - AluSc SINE Alu -7 302 1 5766 97 10 20 chr11 124683058 124683316 -24100156 - L1MA3 LINE L1 0 6305 6046 2286 95 17 0 chr11 124683316 124683610 -24099862 - AluSx SINE Alu -13 299 1 5766 97 10 20 chr11 124683610 124684168 -24099304 - L1MA3 LINE L1 -259 6046 5497 571 118 0 12 chr11 124684268 124684353 -24099119 + L1M1 LINE L1 5468 5551 -754 2265 112 3 0 chr11 124685811 124686116 -24097356 - AluSx SINE Alu -6 306 1 2788 201 30 7 chr11 124686119 124686722 -24096750 - L1M4 LINE L1 -846 5300 4684 676 191 80 20 chr11 124686740 124686939 -24096533 - L1M4 LINE L1 -1738 4408 4198 943 207 0 0 chr11 124686939 124687103 -24096369 - FRAM SINE Alu -15 161 1 303 362 6 6 chr11 124687215 124687378 -24096094 + (TATG)n Simple_repeat Simple_repeat 3 165 0 1649 139 16 0 chr11 124687563 124687814 -24095658 - AluSx SINE Alu -57 255 1 554 267 26 31 chr11 124688061 124688256 -24095216 - L1M4 LINE L1 -1898 4248 4055 1851 99 33 0 chr11 124888520 124888793 -23894679 - L1PA11 LINE L1 -1 6173 5892 180 248 64 80 chr11 124888921 124889046 -23894426 + MIR3 SINE MIR 86 208 0 3022 148 46 43 chr11 124889570 124890179 -23893293 + LTR36 LTR ERV1 1 611 0 723 293 104 8 chr11 124890340 124890733 -23892739 + L2 LINE L2 1497 1927 -1387 4787 167 37 25 chr11 124890763 124891607 -23891865 - MER21B LTR ERV1 -9 854 1 294 292 169 34 chr11 124891612 124891848 -23891624 + L2 LINE L2 1940 2207 -1107 180 0 0 0 chr11 124892160 124892180 -23891292 + (TTA)n Simple_repeat Simple_repeat 2 21 0 424 226 186 31 chr11 124892703 124892853 -23890619 + L2 LINE L2 2799 2924 -389 180 77 0 0 chr11 124892853 124892879 -23890593 + (CCCCCA)n Simple_repeat Simple_repeat 3 28 0 424 226 186 31 chr11 124892879 124892963 -23890509 + L2 LINE L2 2924 3059 -254 1061 210 72 11 chr11 124892963 124893281 -23890191 + MSTD LTR MaLR 1 394 -2 2190 113 0 0 chr11 124893307 124893616 -23889856 + AluSx SINE Alu 1 309 0 237 338 76 38 chr11 124893624 124893781 -23889691 + L2 LINE L2 3117 3279 -34 287 179 49 57 chr11 124893864 124893987 -23889485 - L1MC5 LINE L1 -34 7927 7806 387 276 57 43 chr11 124894039 124894318 -23889154 - L1MC5 LINE L1 -172 7789 7507 2557 59 3 0 chr11 124894813 124895116 -23888356 + AluY SINE Alu 1 304 -7 268 207 30 118 chr11 124895183 124895318 -23888154 - L1MEc LINE L1 -6261 135 13 598 239 23 40 chr11 124895321 124895497 -23887975 - MIR SINE MIR -71 191 19 261 269 40 67 chr11 124895955 124896104 -23887368 + L2 LINE L2 1728 1872 -1442 356 269 119 38 chr11 124896108 124896577 -23886895 - L1M4 LINE L1 -2990 3156 2650 1843 154 48 66 chr11 124896822 124897101 -23886371 - MLT1B LTR MaLR 0 390 119 2053 130 30 7 chr11 124897101 124897401 -23886071 - AluSx SINE Alu -5 307 1 1843 154 48 66 chr11 124897401 124897516 -23885956 - MLT1B LTR MaLR -271 119 3 2314 103 0 0 chr11 124899882 124900173 -23883299 + AluSx SINE Alu 1 291 -21 191 229 220 28 chr11 124901808 124901917 -23881555 + MIR SINE MIR 16 145 -63 208 250 0 49 chr11 124901959 124902103 -23881369 + (TTAGGG)n Simple_repeat Simple_repeat 5 141 0 186 143 0 0 chr11 124902136 124902171 -23881301 + (TTAGGG)n Simple_repeat Simple_repeat 3 37 0 399 203 11 2 chr11 124903154 124903266 -23880206 + MIR SINE MIR 40 150 -65 2271 113 3 0 chr11 124903267 124903576 -23879896 + AluSx SINE Alu 2 311 -1 196 180 120 0 chr11 124904123 124904173 -23879299 - L2 LINE L2 -4 3309 3254 2536 161 39 2 chr11 124904354 124904765 -23878707 - MSTB LTR MaLR 0 426 1 320 164 15 0 chr11 124904937 124905004 -23878468 + (TG)n Simple_repeat Simple_repeat 1 68 0 269 274 32 32 chr11 124906377 124906472 -23877000 - L2 LINE L2 -10 3262 3168 217 343 63 21 chr11 124907784 124907927 -23875545 - L2 LINE L2 -213 3059 2911 1254 169 14 0 chr11 124908353 124908566 -23874906 + AluJo SINE Alu 85 300 -12 482 273 81 73 chr11 124908706 124908826 -23874646 + L1MC/D LINE L1 5260 5378 -758 922 276 105 10 chr11 124908826 124909236 -23874236 + MLT1J2 LTR MaLR 1 449 -1 482 273 81 73 chr11 124909236 124909513 -23873959 + L1MC/D LINE L1 5378 5660 -476 2253 99 23 0 chr11 124910784 124911086 -23872386 - AluSc SINE Alu 0 309 1 2019 126 37 0 chr11 124911089 124911383 -23872089 - AluSg SINE Alu -5 305 1 4592 258 71 77 chr11 124912846 124916132 -23867340 - L1ME3A LINE L1 -219 5934 2659 2096 181 8 6 chr11 124916132 124916496 -23866976 - MLT1A1 LTR MaLR 0 365 1 4592 258 71 77 chr11 124916496 124916599 -23866873 - L1ME3A LINE L1 -3494 2659 2557 385 245 49 0 chr11 124916772 124916874 -23866598 - LTR16C LTR ERVL -40 451 345 395 299 90 31 chr11 124916946 124917390 -23866082 - L1ME3A LINE L1 -4573 1737 1268 374 194 68 19 chr11 124917394 124917497 -23865975 + MIR SINE MIR 152 259 -3 262 222 16 0 chr11 124917519 124917582 -23865890 + LTR50 LTR ERVL 1 64 -731 351 261 0 22 chr11 124917589 124917681 -23865791 - L1ME3A LINE L1 -5025 1094 1005 340 254 109 0 chr11 124917706 124917844 -23865628 + LTR50 LTR ERVL 82 234 -561 325 222 218 64 chr11 124917984 124918250 -23865222 + LTR50 LTR ERVL 481 787 -8 515 286 19 35 chr11 124918261 124918520 -23864952 - L1MEd LINE L1 -4911 1208 954 1031 98 27 2 chr11 124919750 124919904 -23863568 - L1MC/D LINE L1 -754 5551 5414 4557 84 14 6 chr11 124919904 124920526 -23862946 + L1MA3 LINE L1 5430 6056 -249 2208 99 18 0 chr11 124920526 124920809 -23862663 + AluSx SINE Alu 1 288 -24 3944 102 7 26 chr11 124920909 124921265 -23862207 + L1MA3 LINE L1 5703 6043 -262 2341 91 17 0 chr11 124921265 124921561 -23861911 + AluSx SINE Alu 1 301 -11 3944 102 7 26 chr11 124921561 124921819 -23861653 + L1MA3 LINE L1 6043 6305 0 183 205 0 0 chr11 124921838 124921877 -23861595 + A-rich Low_complexity Low_complexity 1 39 0 2461 145 48 9 chr11 124921917 124922453 -23861019 - LTR35 LTR ERV1 0 618 1 2502 67 0 16 chr11 124922483 124922795 -23860677 - AluY SINE Alu -4 307 1 205 191 24 0 chr11 124923097 124923139 -23860333 + CT-rich Low_complexity Low_complexity 3 45 0 1701 189 0 20 chr11 124924548 124924854 -23858618 - AluJo SINE Alu -12 300 1 4130 232 67 54 chr11 124926123 124927941 -23855531 - L1MEc LINE L1 -1923 4292 2367 444 271 32 45 chr11 124927941 124928096 -23855376 + MLT1E LTR MaLR 1 153 -440 4316 142 15 37 chr11 124928099 124928928 -23854544 + L1MC1 LINE L1 5423 6333 0 338 222 19 74 chr11 124928994 124929102 -23854370 + MLT1F1 LTR MaLR 441 567 0 694 236 83 88 chr11 124929146 124929613 -23853859 - L1MEc LINE L1 -4064 2332 1868 364 136 32 0 chr11 124929647 124929730 -23853742 - L1MB2 LINE L1 -2 6181 6079 1853 197 14 19 chr11 124929788 124930149 -23853323 + MLT1A1 LTR MaLR 6 364 -1 462 312 7 0 chr11 124930171 124930325 -23853147 - L1MEc LINE L1 -4576 1820 1666 21 57 0 0 chr11 124930458 124930493 -23852979 + AT_rich Low_complexity Low_complexity 1 35 0 295 323 71 15 chr11 124930565 124930763 -23852709 - HAL1b LINE L1 -659 689 481 1027 171 72 5 chr11 124930798 124930991 -23852481 - AluJo SINE Alu -23 289 84 897 193 47 0 chr11 124931760 124931931 -23851541 + AluJb SINE Alu 131 309 -3 387 185 43 22 chr11 124932107 124932199 -23851273 + MER5A DNA MER1_type 16 109 -80 7725 32 3 0 chr11 124932418 124933861 -23849611 - L1PA5 LINE L1 0 6154 4712 805 324 96 53 chr11 124934264 124935199 -23848273 + L2 LINE L2 2302 3272 0 443 252 10 19 chr11 124936425 124936528 -23846944 + MER81 DNA DNA 12 113 -1 4432 152 37 9 chr11 124936668 124937457 -23846015 - L1MB7 LINE L1 -1 6183 5373 1901 154 0 3 chr11 124938125 124938423 -23845049 + AluJo SINE Alu 9 305 -7 648 244 4 93 chr11 124940134 124940267 -23843205 + MIR SINE MIR 53 159 -103 1599 197 27 7 chr11 124940267 124940567 -23842905 + AluSx SINE Alu 1 306 -6 648 244 4 93 chr11 124940567 124940658 -23842814 + MIR SINE MIR 159 257 -5 1308 195 14 0 chr11 124941234 124941455 -23842017 - MER58A DNA MER1_type 0 224 1 1925 129 35 0 chr11 124941513 124941800 -23841672 - AluSx SINE Alu -12 300 4 1358 191 162 3 chr11 124941802 124942111 -23841361 + MER47A DNA MER2_type 9 366 0 778 89 0 49 chr11 124942276 124942399 -23841073 + AluY SINE Alu 193 309 -2 651 221 44 103 chr11 124942498 124942769 -23840703 - MER112 DNA MER1_type -1 255 1 200 365 16 0 chr11 124942831 124942894 -23840578 - L2 LINE L2 -83 3189 3126 3308 135 18 0 chr11 124943866 124944370 -23839102 + L1PA16 LINE L1 5654 6166 0 382 297 54 54 chr11 124944493 124944641 -23838831 - L2 LINE L2 -2 3270 3123 2198 122 0 7 chr11 124945733 124946037 -23837435 + AluSx SINE Alu 1 302 -10 724 122 114 32 chr11 124946262 124946385 -23837087 + FLAM_C SINE Alu 1 133 0 184 366 14 14 chr11 124946469 124946540 -23836932 - MIR3 SINE MIR -43 165 95 * 225 226 204 0 chr11 124946523 124946616 -23836856 + MIR3 SINE MIR 94 205 -3 379 353 172 20 chr11 124947581 124947884 -23835588 - L2 LINE L2 -8 3264 2916 444 215 13 74 chr11 124947909 124948058 -23835414 + LTR16A1 LTR ERVL 6 145 -312 599 250 119 21 chr11 124948242 124948478 -23834994 + LTR16A1 LTR ERVL 174 432 -25 731 178 0 31 chr11 124948880 124949009 -23834463 + FLAM_C SINE Alu 1 125 -8 285 284 68 23 chr11 124949828 124949916 -23833556 - L2 LINE L2 -28 3244 3153 1381 217 26 39 chr11 124949926 124950321 -23833151 + MLT1A1 LTR MaLR 1 360 -5 316 308 78 63 chr11 124950392 124950731 -23832741 - L2 LINE L2 -221 3051 2709 938 128 0 0 chr11 124950842 124950983 -23832489 - L1PA13 LINE L1 -3 6160 6020 5416 112 2 23 chr11 124950983 124951086 -23832386 - L1PA13 LINE L1 -39 6124 6020 2129 128 3 0 chr11 124951086 124951382 -23832090 + AluSq SINE Alu 1 297 -16 5416 112 2 23 chr11 124951382 124952090 -23831382 - L1PA13 LINE L1 -143 6020 5330 1307 84 0 52 chr11 124952105 124952296 -23831176 + L1PA8A LINE L1 5949 6129 -2 249 208 0 0 chr11 124952488 124952536 -23830936 + L2 LINE L2 3224 3271 -1 3004 221 40 25 chr11 124952940 124953582 -23829890 + MER82 DNA MER2_type 2 653 0 507 301 66 36 chr11 124953744 124953940 -23829532 - MIR SINE MIR -59 203 2 895 167 0 0 chr11 124955751 124955877 -23827595 + FLAM_C SINE Alu 1 126 -7 2448 98 3 9 chr11 124956379 124956714 -23826758 + L1PB1 LINE L1 5818 6150 -1 1291 143 6 0 chr11 124956751 124956933 -23826539 + AluSx SINE Alu 1 183 -129 297 325 19 48 chr11 124957064 124957302 -23826170 + AluYa5 SINE Alu 99 330 0 384 273 45 34 chr11 124957773 124957949 -23825523 - L1MEd LINE L1 -4892 1227 1050 259 326 62 31 chr11 124957950 124958079 -23825393 - MLT1J2 LTR MaLR -55 395 263 315 336 117 7 chr11 124958111 124958248 -23825224 - MLT1J2 LTR MaLR -257 193 42 2134 100 3 85 chr11 124958906 124959246 -23824226 + AluSx SINE Alu 1 312 0 376 381 41 7 chr11 124959555 124959702 -23823770 + L2 LINE L2 3099 3250 -22 12025 192 35 24 chr11 124960600 124964356 -23819116 + L1MC1 LINE L1 32 3745 -2865 2199 89 41 10 chr11 124964356 124964647 -23818825 + AluSx SINE Alu 1 300 -12 12025 192 35 24 chr11 124964647 124965221 -23818251 + L1MC1 LINE L1 3745 4311 -2299 2427 90 0 0 chr11 124965221 124965522 -23817950 + AluSg SINE Alu 1 301 -9 12025 192 35 24 chr11 124965522 124966866 -23816606 + L1MC1 LINE L1 4311 5867 -743 2409 134 29 22 chr11 124966835 124967245 -23816227 + L1MC1 LINE L1 6201 6613 0 * 450 321 77 75 chr11 124967518 124968026 -23815446 - MLT1K LTR MaLR -24 564 56 225 0 0 0 chr11 124968084 124968109 -23815363 + (TTTCC)n Simple_repeat Simple_repeat 2 26 0 264 323 0 21 chr11 124968474 124968570 -23814902 + MIR SINE MIR 72 165 -97 1170 34 0 27 chr11 124969048 124969194 -23814278 + L1PA4 LINE L1 5737 5878 -277 1303 40 0 0 chr11 124969203 124969351 -23814121 + L1PA4 LINE L1 6005 6152 -3 3186 56 0 3 chr11 124969359 124969737 -23813735 + L1PA5 LINE L1 5770 6146 -8 542 153 43 27 chr11 124970225 124970367 -23813105 - LTR45B LTR ERV1 0 525 343 23 0 0 0 chr11 124971093 124971116 -23812356 + AT_rich Low_complexity Low_complexity 1 23 0 223 253 67 13 chr11 124971291 124971366 -23812106 - MIR3 SINE MIR -10 198 120 275 346 37 29 chr11 124971485 124971621 -23811851 + MER5A DNA MER1_type 45 181 -8 792 239 13 13 chr11 124971621 124971780 -23811692 + FRAM SINE Alu 1 159 -7 283 115 0 0 chr11 124971781 124971833 -23811639 + L1PA15 LINE L1 6113 6164 -1 408 207 72 72 chr11 124972452 124972594 -23810878 - MER112 DNA MER1_type -1 259 115 1811 171 0 10 chr11 124972594 124972887 -23810585 - AluJb SINE Alu -22 290 1 408 207 72 72 chr11 124972887 124972966 -23810506 - MER112 DNA MER1_type -144 116 38 1109 213 52 0 chr11 124972992 124973241 -23810231 + L1MB1 LINE L1 5913 6174 -15 273 301 189 26 chr11 124973452 124973881 -23809591 - L1ME LINE L1 -299 5822 5324 31 0 0 0 chr11 124974028 124974059 -23809413 + AT_rich Low_complexity Low_complexity 1 31 0 452 217 76 51 chr11 124974062 124974219 -23809253 - LTR12 LTR ERV1 -354 360 200 3404 222 16 28 chr11 124974483 124975219 -23808253 - HERV17 LTR ERV1 -4 8622 504 10851 178 4 3 chr11 124975224 124977002 -23806470 - HERV17 LTR ERV1 -4367 4259 2481 768 125 50 155 chr11 124977255 124977399 -23806073 + MER5A DNA MER1_type 1 120 -69 923 138 8 0 chr11 124977399 124977529 -23805943 - FLAM_C SINE Alu -2 131 1 768 125 50 155 chr11 124977529 124977584 -23805888 + MER5A DNA MER1_type 120 179 -10 2430 51 38 3 chr11 124978044 124978336 -23805136 - AluSp SINE Alu -11 302 1 2471 97 0 0 chr11 124979250 124979559 -23803913 + AluSc SINE Alu 1 309 0 231 114 0 0 chr11 124980550 124980585 -23802887 + (TC)n Simple_repeat Simple_repeat 2 36 0 410 293 17 9 chr11 124980753 124980869 -23802603 - L2 LINE L2 0 3313 3197 198 0 0 0 chr11 124981180 124981202 -23802270 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1122 258 129 18 chr11 124981510 124981897 -23801575 + MLT1L LTR MaLR 1 430 -185 22 56 0 0 chr11 124981903 124981939 -23801533 + AT_rich Low_complexity Low_complexity 1 36 0 202 148 66 0 chr11 124981946 124982007 -23801465 + (TA)n Simple_repeat Simple_repeat 1 65 0 21 36 0 0 chr11 124982272 124982300 -23801172 + AT_rich Low_complexity Low_complexity 1 28 0 634 217 202 8 chr11 124982307 124982574 -23800898 + Charlie7 DNA MER1_type 1808 2126 -486 1517 183 33 27 chr11 124982576 124982775 -23800697 - L1MC2 LINE L1 -332 6012 5809 1832 98 8 0 chr11 124982775 124983019 -23800453 - AluY SINE Alu -12 299 54 1517 183 33 27 chr11 124983019 124983153 -23800319 - L1MC2 LINE L1 -535 5809 5677 521 240 118 76 chr11 124983166 124983624 -23799848 + Charlie7 DNA MER1_type 2133 2609 -3 1486 181 7 11 chr11 124983636 124983907 -23799565 + AluJo SINE Alu 30 299 -13 3230 127 143 16 chr11 124983996 124984618 -23798854 - L1MC2 LINE L1 -1 6343 5643 389 210 12 0 chr11 124984613 124984694 -23798778 - L1MC2 LINE L1 -917 5229 5148 * 253 75 19 94 chr11 124984697 124984750 -23798722 + LTR14B LTR ERVK 1 49 -559 * 2057 111 100 27 chr11 124984732 124985103 -23798369 + LTR14B LTR ERVK 211 608 0 1952 232 18 18 chr11 124985105 124985586 -23797886 - L1MC2 LINE L1 -996 5150 4667 180 0 0 0 chr11 124985586 124985606 -23797866 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1952 232 18 18 chr11 124985606 124985632 -23797840 - L1MC2 LINE L1 -1478 4668 4643 1990 129 10 26 chr11 124985639 124985949 -23797523 - AluSx SINE Alu -7 305 1 232 246 254 48 chr11 124986027 124986153 -23797319 - MIR3 SINE MIR -41 167 16 481 275 57 51 chr11 124986614 124986985 -23796487 - L1ME4a LINE L1 -1 6120 5748 180 97 0 0 chr11 124987351 124987382 -23796090 + (A)n Simple_repeat Simple_repeat 1 31 0 2940 219 60 9 chr11 124987886 124988641 -23794831 + L1M4 LINE L1 3679 4471 -1675 1730 159 0 18 chr11 124988642 124988925 -23794547 + AluJb SINE Alu 1 278 -34 2320 98 0 3 chr11 124989062 124989357 -23794115 - AluSg SINE Alu -16 294 1 249 253 40 0 chr11 124989370 124989445 -23794027 - MIR SINE MIR -110 152 75 1007 284 137 35 chr11 124989454 124989762 -23793710 - L2 LINE L2 -559 2755 2480 3056 178 13 31 chr11 124989762 124990313 -23793159 + MLT1F LTR MaLR 2 542 0 1007 284 137 35 chr11 124990313 124990521 -23792951 - L2 LINE L2 -834 2480 2186 257 289 13 0 chr11 124990541 124990617 -23792855 - L2 LINE L2 -220 3052 2976 22 35 0 0 chr11 124992044 124992073 -23791399 + AT_rich Low_complexity Low_complexity 1 29 0 965 149 54 34 chr11 124992518 124992837 -23790635 + MSTD LTR MaLR 1 396 0 270 0 0 0 chr11 124992932 124992962 -23790510 + (CAA)n Simple_repeat Simple_repeat 2 31 0 25 75 0 0 chr11 124993113 124993166 -23790306 + AT_rich Low_complexity Low_complexity 1 53 0 989 171 0 0 chr11 124993170 124993316 -23790156 + FRAM SINE Alu 1 146 -30 1245 247 29 8 chr11 124993331 124993707 -23789765 - L1ME2 LINE L1 -17 6147 5764 1864 156 20 0 chr11 124993801 124994096 -23789376 - AluJo SINE Alu -11 301 1 2334 87 3 13 chr11 124994505 124994814 -23788658 - AluSq SINE Alu -7 306 1 663 169 7 78 chr11 124994883 124995037 -23788435 - FLAM_C SINE Alu 0 143 1 2219 132 0 3 chr11 124995041 124995345 -23788127 - AluSx SINE Alu -9 303 1 2261 103 3 13 chr11 124995566 124995877 -23787595 + AluSx SINE Alu 1 308 -4 333 330 54 0 chr11 124995978 124996090 -23787382 - MIR3 SINE MIR -76 132 15 327 211 33 67 chr11 124996269 124996359 -23787113 + L2 LINE L2 3184 3270 -2 285 328 126 8 chr11 124996669 124996788 -23786684 - MIR3 SINE MIR -45 163 31 26 30 0 0 chr11 124996793 124996826 -23786646 + AT_rich Low_complexity Low_complexity 1 33 0 756 257 53 18 chr11 124996860 124997086 -23786386 - MIR SINE MIR -12 250 17 343 241 55 55 chr11 124998474 124998619 -23784853 - MIR SINE MIR 0 262 118 27 0 0 0 chr11 124998749 124998776 -23784696 + AT_rich Low_complexity Low_complexity 1 27 0 1672 137 14 47 chr11 124998989 124999267 -23784205 - AluJo SINE Alu -19 293 25 513 235 150 0 chr11 124999306 124999493 -23783979 - MER58C DNA MER1_type 0 215 1 405 260 161 25 chr11 125000843 125001166 -23782306 - L1MC4 LINE L1 -134 7908 7542 230 309 29 0 chr11 125002155 125002223 -23781249 + L2 LINE L2 3244 3313 0 2440 31 41 0 chr11 125002807 125003099 -23780373 - AluY SINE Alu -7 304 1 206 241 56 0 chr11 125004310 125004364 -23779108 - L2 LINE L2 -3 3269 3213 848 230 81 34 chr11 125004446 125004768 -23778704 - MER46C DNA MER2_type 0 338 2 32 43 0 0 chr11 125005286 125005332 -23778140 + AT_rich Low_complexity Low_complexity 1 46 0 319 226 151 28 chr11 125005341 125005447 -23778025 - MER103 DNA DNA -47 119 1 195 42 0 0 chr11 125006111 125006135 -23777337 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 243 345 18 44 chr11 125006497 125006610 -23776862 - MIR SINE MIR -146 116 7 2231 140 17 98 chr11 125007132 125007604 -23775868 + Tigger2a DNA MER2_type 1 434 0 517 292 93 13 chr11 125007604 125007830 -23775642 + MIR SINE MIR 15 258 -4 22 56 0 0 chr11 125008350 125008386 -23775086 + AT_rich Low_complexity Low_complexity 1 36 0 1618 124 40 4 chr11 125008652 125008927 -23774545 - MER47A DNA MER2_type 0 366 82 758 161 0 0 chr11 125010280 125010398 -23773074 + FLAM_C SINE Alu 1 118 -25 2283 92 0 3 chr11 125010570 125010863 -23772609 + AluSc SINE Alu 1 292 -17 27 0 0 0 chr11 125011076 125011103 -23772369 + AT_rich Low_complexity Low_complexity 1 27 0 343 241 55 55 chr11 125011233 125011378 -23772094 + MIR SINE MIR 118 262 0 756 257 53 18 chr11 125012769 125012995 -23770477 + MIR SINE MIR 17 250 -12 26 30 0 0 chr11 125013029 125013062 -23770410 + AT_rich Low_complexity Low_complexity 1 33 0 285 328 126 8 chr11 125013067 125013186 -23770286 + MIR3 SINE MIR 31 163 -45 327 211 33 67 chr11 125013496 125013586 -23769886 - L2 LINE L2 -2 3270 3184 488 350 39 0 chr11 125013765 125013945 -23769527 + MIR3 SINE MIR 15 201 -7 344 303 128 77 chr11 125013960 125014569 -23768903 + L1M2 LINE L1 878 1438 -5411 3299 136 89 2 chr11 125015079 125015661 -23767811 - MER41B LTR ERV1 -2 633 1 2233 103 3 0 chr11 125016460 125016751 -23766721 + AluSg SINE Alu 1 292 -18 2624 123 8 39 chr11 125016955 125017023 -23766449 - L1MB3 LINE L1 0 6183 6114 1968 141 6 59 chr11 125017023 125017378 -23766094 + MER1B DNA MER1_type 2 337 0 2624 123 8 39 chr11 125017378 125017797 -23765675 - L1MB3 LINE L1 -69 6114 5711 1912 166 3 10 chr11 125017819 125018132 -23765340 - AluJb SINE Alu -1 311 1 841 164 0 0 chr11 125018302 125018430 -23765042 + AluJo SINE Alu 2 129 -173 2647 127 31 2 chr11 125018465 125018881 -23764591 + MSTA LTR MaLR 1 428 0 3046 137 19 0 chr11 125018882 125019407 -23764065 + MSTA-int LTR MaLR 2 536 -1115 271 146 21 0 chr11 125019405 125019453 -23764019 + MSTA-int LTR MaLR 755 803 -848 * 2871 116 31 0 chr11 125019473 125019888 -23763584 + MSTA LTR MaLR 1 428 0 774 238 24 0 chr11 125019888 125020052 -23763420 + AluJo SINE Alu 138 305 -7 248 263 0 18 chr11 125020647 125020704 -23762768 - L2 LINE L2 -4 3268 3213 275 310 167 0 chr11 125021118 125021334 -23762138 - L2 LINE L2 -867 2447 2196 201 385 0 12 chr11 125022524 125022607 -23760865 + MIR SINE MIR 20 101 -161 236 290 107 38 chr11 125022776 125022907 -23760565 + MIR SINE MIR 105 244 -18 281 172 0 2 chr11 125023100 125023153 -23760319 + MLT1J LTR MaLR 84 168 -315 810 135 0 0 chr11 125023220 125023331 -23760141 + FLAM_C SINE Alu 21 131 -12 229 197 61 0 chr11 125024705 125024771 -23758701 + L1MA4 LINE L1 6226 6295 -5 228 352 40 57 chr11 125025068 125025244 -23758228 + MIR SINE MIR 25 197 -65 39 38 0 0 chr11 125025274 125025327 -23758145 + AT_rich Low_complexity Low_complexity 1 53 0 1392 152 15 19 chr11 125025710 125025902 -23757570 + L1MB4 LINE L1 5712 5904 -276 2087 147 24 0 chr11 125025902 125026242 -23757230 - MER7A DNA MER2_type 0 346 1 1392 152 15 19 chr11 125026242 125026319 -23757153 + L1MB4 LINE L1 5904 5980 -200 619 179 82 0 chr11 125026336 125026470 -23757002 + L1MB4 LINE L1 6036 6180 0 20906 151 24 15 chr11 125026923 125030508 -23752964 + L1M1 LINE L1 13 3668 -3897 2702 20 0 0 chr11 125030508 125030808 -23752664 + AluY SINE Alu 1 300 -11 20906 151 24 15 chr11 125030808 125032082 -23751390 + L1M1 LINE L1 3668 4928 -2637 1255 113 39 58 chr11 125032132 125032389 -23751083 + L1MA3 LINE L1 6054 6305 0 227 338 45 0 chr11 125032557 125032714 -23750758 + L1MC4a LINE L1 5254 5417 -2391 2314 118 0 6 chr11 125032799 125033113 -23750359 + AluSx SINE Alu 1 312 0 879 209 46 122 chr11 125033304 125033697 -23749775 - MLT1A2 LTR MaLR 0 374 12 233 242 39 39 chr11 125033745 125033873 -23749599 + L1M4 LINE L1 4923 5050 -1096 2455 80 3 0 chr11 125033944 125034246 -23749226 - AluSp SINE Alu -10 303 1 1892 228 160 8 chr11 125034247 125034760 -23748712 + MLT1G1 LTR MaLR 5 595 0 231 254 48 56 chr11 125035120 125035246 -23748226 + L1MC4a LINE L1 6055 6179 -1629 1187 142 5 14 chr11 125035583 125035801 -23747671 - L1MA7 LINE L1 -144 6147 5932 2267 93 63 44 chr11 125035933 125036299 -23747173 + THE1C LTR MaLR 1 373 -2 380 180 0 22 chr11 125036359 125036448 -23747024 + MLT2F LTR ERVL 1 87 -576 1179 253 75 88 chr11 125036485 125037180 -23746292 + MER21B LTR ERV1 24 709 -154 1004 266 87 58 chr11 125037187 125037752 -23745720 + MLT2F LTR ERVL 83 663 0 410 344 59 15 chr11 125038076 125038349 -23745123 + L1M4 LINE L1 2232 2516 -3630 31 44 0 0 chr11 125038624 125038669 -23744803 + AT_rich Low_complexity Low_complexity 1 45 0 353 330 63 5 chr11 125039418 125039609 -23743863 + L1M4 LINE L1 2773 2974 -3172 2881 249 77 82 chr11 125039612 125040781 -23742691 + L1MEc LINE L1 37 1210 -5186 1381 201 65 0 chr11 125040781 125041060 -23742412 + AluJo SINE Alu 1 297 -15 1735 136 14 35 chr11 125041062 125041349 -23742123 + AluJo SINE Alu 1 281 -31 2881 249 77 82 chr11 125041349 125042090 -23741382 + L1MEc LINE L1 1211 1941 -4455 611 278 97 68 chr11 125042103 125042528 -23740944 + L1MEc LINE L1 3324 3768 -2447 2011 144 0 7 chr11 125042528 125042833 -23740639 + AluSx SINE Alu 6 308 -4 611 278 97 68 chr11 125042833 125042911 -23740561 + L1MEc LINE L1 3768 3842 -2373 392 303 114 72 chr11 125043047 125043337 -23740135 - L2 LINE L2 -36 3236 2935 329 340 148 0 chr11 125043377 125043580 -23739892 - L2 LINE L2 -560 2754 2522 902 141 180 39 chr11 125043859 125044065 -23739407 + MER46A DNA MER2_type 2 236 0 2209 126 0 0 chr11 125044313 125044615 -23738857 + AluSx SINE Alu 1 302 -10 1951 51 0 4 chr11 125046997 125047232 -23736240 - AluSg1 SINE Alu -75 234 1 371 291 200 39 chr11 125048300 125048609 -23734863 - L2 LINE L2 -3 3310 2943 783 209 107 19 chr11 125048609 125048815 -23734657 + MER58A DNA MER1_type 1 224 0 371 291 200 39 chr11 125048815 125048835 -23734637 - L2 LINE L2 -370 2943 2928 196 306 172 25 chr11 125048835 125048992 -23734480 - L2 LINE L2 -783 2531 2352 22 35 0 0 chr11 125049076 125049105 -23734367 + AT_rich Low_complexity Low_complexity 1 29 0 569 250 0 0 chr11 125049308 125049424 -23734048 - FLAM_A SINE Alu -16 117 2 597 285 76 62 chr11 125049648 125050002 -23733470 + L2 LINE L2 2544 2902 -412 571 301 124 9 chr11 125050147 125050373 -23733099 + MIR SINE MIR 1 252 -10 361 349 82 0 chr11 125050489 125050635 -23732837 - MIR3 SINE MIR -21 187 30 230 207 17 0 chr11 125050730 125050788 -23732684 - MER112 DNA MER1_type -128 132 74 2345 105 0 3 chr11 125051277 125051590 -23731882 + AluSx SINE Alu 1 312 0 31 26 0 0 chr11 125052149 125052187 -23731285 + AT_rich Low_complexity Low_complexity 1 38 0 1665 189 3 3 chr11 125052254 125052567 -23730905 + AluSq SINE Alu 1 313 0 386 290 69 8 chr11 125056150 125056281 -23727191 + L3 LINE CR1 1058 1196 -381 180 224 82 0 chr11 125056282 125056331 -23727141 - MIR SINE MIR 0 262 210 284 300 30 40 chr11 125056348 125056448 -23727024 - L2 LINE L2 -15 3298 3200 * 384 268 145 14 chr11 125056432 125056570 -23726902 - MIR SINE MIR -44 218 63 672 198 115 11 chr11 125056572 125056754 -23726718 - MER105 DNA DNA 0 204 4 432 306 87 0 chr11 125056798 125056971 -23726501 + L3 LINE CR1 1353 1540 -37 318 252 122 0 chr11 125058591 125058722 -23724750 - MER103 DNA DNA -13 153 7 704 185 27 7 chr11 125058904 125059050 -23724422 + FRAM SINE Alu 4 152 -14 221 278 296 9 chr11 125059802 125059910 -23723562 + L2 LINE L2 3134 3272 0 317 209 47 115 chr11 125060094 125060242 -23723230 + L1ME4a LINE L1 5638 5775 -346 837 105 0 0 chr11 125060252 125060366 -23723106 + AluY SINE Alu 1 114 -197 2313 82 0 0 chr11 125060366 125060785 -23722687 + AluSx SINE Alu 2 420 0 1517 53 5 11 chr11 125060785 125060975 -23722497 + AluY SINE Alu 106 294 -17 181 231 0 19 chr11 125060994 125061046 -23722426 - MIR SINE MIR -48 214 164 4215 164 46 10 chr11 125061046 125061922 -23721550 - Cheshire DNA MER1_type 0 2420 1514 440 216 10 0 chr11 125061933 125062030 -23721442 - Cheshire DNA MER1_type -2316 104 7 1705 163 0 81 chr11 125062205 125062401 -23721071 - AluJb SINE Alu -7 305 145 2051 141 26 0 chr11 125062401 125062705 -23720767 - AluSx SINE Alu 0 312 1 1705 163 0 81 chr11 125062705 125062840 -23720632 - AluJb SINE Alu -167 145 1 22 0 0 0 chr11 125063028 125063050 -23720422 + AT_rich Low_complexity Low_complexity 1 22 0 343 231 212 72 chr11 125063356 125063620 -23719852 + L1ME4a LINE L1 5804 6104 -17 780 186 0 0 chr11 125063621 125063750 -23719722 - FLAM_C SINE Alu -12 131 3 2188 95 20 10 chr11 125063758 125064064 -23719408 - AluSq SINE Alu 0 313 5 21 36 0 0 chr11 125064133 125064161 -23719311 + AT_rich Low_complexity Low_complexity 1 28 0 869 129 8 0 chr11 125064161 125064285 -23719187 - FLAM_C SINE Alu -18 125 1 7792 134 29 16 chr11 125064410 125066139 -23717333 + L1M1 LINE L1 2275 4034 -3531 2439 81 0 3 chr11 125066139 125066446 -23717026 + AluY SINE Alu 1 306 -5 7792 134 29 16 chr11 125066446 125066763 -23716709 + L1M1 LINE L1 4034 4345 -3220 7394 32 12 13 chr11 125066808 125067796 -23715676 - L1PA4 LINE L1 -3 6152 5164 2899 13 0 0 chr11 125067796 125068111 -23715361 - AluYb8 SINE Alu -3 315 1 7394 32 12 13 chr11 125068111 125068714 -23714758 - L1PA4 LINE L1 -991 5164 4562 334 244 83 81 chr11 125069159 125069590 -23713882 + HERVK14C LTR ERVK 4237 5090 -2169 483 304 107 86 chr11 125070404 125071170 -23712302 + L2 LINE L2 1174 1955 -1359 377 339 86 11 chr11 125071379 125071565 -23711907 - MIR SINE MIR 0 262 63 25 51 0 0 chr11 125071904 125071943 -23711529 + AT_rich Low_complexity Low_complexity 1 39 0 258 375 11 0 chr11 125072197 125072285 -23711187 - MIR SINE MIR -170 92 4 1695 167 46 21 chr11 125072826 125073107 -23710365 + AluJb SINE Alu 1 288 -24 223 197 34 34 chr11 125073746 125073863 -23709609 + (TATAA)n Simple_repeat Simple_repeat 4 120 0 1261 103 6 6 chr11 125074693 125074867 -23708605 - AluSg/x SINE Alu -15 297 124 399 253 0 0 chr11 125074867 125074966 -23708506 + L1M4 LINE L1 4846 4944 -1202 283 264 24 32 chr11 125075009 125075134 -23708338 + L1M4 LINE L1 4930 5053 -1093 1183 193 91 0 chr11 125075140 125075404 -23708068 + MER49 LTR ERV1 1 288 -635 306 67 0 0 chr11 125075419 125075464 -23708008 + (TG)n Simple_repeat Simple_repeat 2 46 0 326 68 0 0 chr11 125075494 125075538 -23707934 + MER4D LTR ERV1 238 281 -622 1426 197 19 22 chr11 125075556 125075876 -23707596 + MER4D LTR ERV1 568 886 -17 1477 214 67 19 chr11 125075898 125076258 -23707214 + MER21B LTR ERV1 1 377 -486 219 333 62 10 chr11 125077745 125077841 -23705631 - MIR SINE MIR -78 130 30 254 206 0 41 chr11 125077877 125077950 -23705522 - MLT1K LTR MaLR -10 578 509 235 250 45 11 chr11 125079004 125079092 -23704380 + MER70B LTR ERVL 459 549 -29 2069 102 3 74 chr11 125081259 125081584 -23701888 + AluSq SINE Alu 1 302 -11 798 206 112 65 chr11 125082475 125082616 -23700856 - MER58A DNA MER1_type -2196 224 68 1792 167 0 7 chr11 125082616 125082904 -23700568 - AluJb SINE Alu -26 286 1 798 206 112 65 chr11 125082904 125082976 -23700496 - MER58A DNA MER1_type -2352 68 1 319 143 60 98 chr11 125083067 125083200 -23700272 - Charlie7 DNA MER1_type -49 2563 2436 * 720 258 13 9 chr11 125083194 125083423 -23700049 - Charlie7 DNA MER1_type -1879 733 504 709 239 174 5 chr11 125083436 125083649 -23699823 - MIR SINE MIR -1 261 13 1247 226 100 14 chr11 125083673 125084103 -23699369 - Charlie7 DNA MER1_type -2118 494 28 888 161 56 22 chr11 125084458 125084638 -23698834 - MER5A DNA MER1_type -3 186 1 558 295 44 85 chr11 125084944 125085136 -23698336 + L2 LINE L2 2151 2320 -994 1969 184 45 37 chr11 125085136 125085372 -23698100 + MLT1C LTR MaLR 1 233 -234 2231 102 3 3 chr11 125085372 125085665 -23697807 + AluSg SINE Alu 2 294 -16 1969 184 45 37 chr11 125085665 125085891 -23697581 + MLT1C LTR MaLR 233 467 0 558 295 44 85 chr11 125085891 125086088 -23697384 + L2 LINE L2 2320 2524 -790 522 257 151 5 chr11 125086222 125086413 -23697059 - MIR SINE MIR 0 262 37 246 397 91 38 chr11 125086489 125086907 -23696565 + L2 LINE L2 2823 3262 -10 189 358 46 46 chr11 125088673 125088782 -23694690 - L2 LINE L2 -47 3225 3117 1555 222 56 10 chr11 125089491 125089887 -23693585 + MER110 LTR ERV1 66 479 -12 266 264 75 69 chr11 125091478 125091637 -23691835 + MIR SINE MIR 8 147 -61 465 299 84 0 chr11 125093906 125094073 -23689399 + MIR SINE MIR 37 217 -45 2279 131 0 0 chr11 125094124 125094430 -23689042 + AluSx SINE Alu 1 306 -6 6113 110 0 0 chr11 125095267 125096293 -23687179 - L1PA14 LINE L1 -9 6152 5128 352 297 23 46 chr11 125096656 125096742 -23686730 - MIR SINE MIR -17 245 163 2330 98 0 3 chr11 125096742 125097038 -23686434 - AluSg SINE Alu -15 295 1 352 297 23 46 chr11 125097038 125097126 -23686346 - MIR SINE MIR -99 163 75 1033 284 137 35 chr11 125097135 125097443 -23686029 - L2 LINE L2 -559 2755 2480 2815 178 13 31 chr11 125097443 125097994 -23685478 + MLT1F LTR MaLR 2 542 0 1033 284 137 35 chr11 125097994 125098202 -23685270 - L2 LINE L2 -834 2480 2186 257 289 13 0 chr11 125098222 125098298 -23685174 - L2 LINE L2 -220 3052 2976 22 35 0 0 chr11 125099722 125099751 -23683721 + AT_rich Low_complexity Low_complexity 1 29 0 1004 152 51 34 chr11 125100196 125100516 -23682956 + MSTD LTR MaLR 1 396 0 270 0 0 0 chr11 125100611 125100641 -23682831 + (CAA)n Simple_repeat Simple_repeat 2 31 0 25 75 0 0 chr11 125100792 125100845 -23682627 + AT_rich Low_complexity Low_complexity 1 53 0 989 171 0 0 chr11 125100849 125100995 -23682477 + FRAM SINE Alu 1 146 -30 1245 247 29 8 chr11 125101010 125101386 -23682086 - L1ME2 LINE L1 -17 6147 5764 1855 157 20 0 chr11 125101480 125101774 -23681698 - AluJo SINE Alu -12 300 1 2153 85 20 10 chr11 125102241 125102534 -23680938 - AluSq SINE Alu -13 300 5 686 156 7 78 chr11 125102607 125102761 -23680711 - FLAM_C SINE Alu 0 143 1 2380 92 0 3 chr11 125102765 125103068 -23680404 - AluY SINE Alu -9 302 1 13475 148 22 63 chr11 125103068 125106822 -23676650 - L1 LINE L1 -3533 4032 16 3281 123 66 14 chr11 125106972 125107963 -23675509 + Tigger3b DNA MER2_type 21 1232 0 997 132 5 29 chr11 125108593 125108798 -23674674 + L1MA4 LINE L1 6101 6300 0 293 345 58 6 chr11 125108821 125108995 -23674477 - L1M4 LINE L1 -1997 4149 3967 22 99 0 0 chr11 125109005 125109076 -23674396 + AT_rich Low_complexity Low_complexity 1 71 0 313 286 36 36 chr11 125109143 125109343 -23674129 - L1M4 LINE L1 -2420 3726 3526 22 80 0 0 chr11 125109733 125109783 -23673689 + AT_rich Low_complexity Low_complexity 1 50 0 3310 218 36 38 chr11 125109947 125111299 -23672173 - L1ME2 LINE L1 0 6147 4788 382 226 128 73 chr11 125111479 125111643 -23671829 + MER5A DNA MER1_type 17 189 0 831 184 25 6 chr11 125112312 125112470 -23671002 - MER20 DNA MER1_type 0 219 59 569 266 100 68 chr11 125112557 125113208 -23670264 - L1ME2 LINE L1 -4862 1257 586 400 159 125 0 chr11 125113259 125113347 -23670125 - MER76 LTR ERV -303 385 287 390 174 47 35 chr11 125113319 125113405 -23670067 - MER76 LTR ERV -601 87 1 * 901 274 47 67 chr11 125113435 125114157 -23669315 + HAL1 LINE L1 668 1375 -1132 1933 279 147 9 chr11 125114163 125114852 -23668620 + L1PA13 LINE L1 475 1258 -5529 20002 161 18 18 chr11 125114855 125120270 -23663202 + L1PA13 LINE L1 1396 6809 -5 852 258 163 43 chr11 125120320 125120550 -23662922 + HAL1 LINE L1 1425 1626 -881 1681 162 50 26 chr11 125120550 125120853 -23662619 - AluJo SINE Alu -2 310 1 852 258 163 43 chr11 125120853 125121418 -23662054 + HAL1 LINE L1 1626 2316 -191 2055 167 63 0 chr11 125121953 125122348 -23661124 + MSTB LTR MaLR 1 420 -6 359 266 56 63 chr11 125122362 125122505 -23660967 + HAL1 LINE L1 2360 2501 -6 283 336 101 20 chr11 125122553 125122702 -23660770 + L2 LINE L2 2748 2908 -406 354 253 165 18 chr11 125122737 125122907 -23660565 - LTR33 LTR ERVL -4 517 323 451 253 136 20 chr11 125124422 125124620 -23658852 - L1MC4a LINE L1 -1875 5933 5713 1834 175 10 0 chr11 125124724 125125021 -23658451 - AluJb SINE Alu -12 300 1 21 36 0 0 chr11 125125044 125125072 -23658400 + AT_rich Low_complexity Low_complexity 1 28 0 292 237 148 82 chr11 125125312 125125569 -23657903 - HAL1b LINE L1 -506 842 569 568 296 24 6 chr11 125126313 125126482 -23656990 - MIR SINE MIR -84 178 7 180 0 0 0 chr11 125126903 125126923 -23656549 + (TTA)n Simple_repeat Simple_repeat 2 21 0 461 299 121 53 chr11 125127085 125127440 -23656032 + L2 LINE L2 2892 3270 -2 296 258 194 0 chr11 125127906 125127999 -23655473 - L2 LINE L2 -2 3311 3201 432 296 31 13 chr11 125129893 125130052 -23653420 - L2 LINE L2 -210 3062 2901 488 171 38 9 chr11 125130114 125130219 -23653253 - L1MA9 LINE L1 -38 6274 6167 457 117 0 0 chr11 125130219 125130296 -23653176 - AluS SINE Alu -7 303 227 892 68 98 23 chr11 125130302 125130434 -23653038 - AluYa5 SINE Alu -169 142 1 2860 163 56 30 chr11 125130436 125131076 -23652396 - L1MA9 LINE L1 -139 6173 5517 1071 227 39 91 chr11 125131348 125132035 -23651437 - L1MC5 LINE L1 -741 7220 6562 21 36 0 0 chr11 125132051 125132079 -23651393 + AT_rich Low_complexity Low_complexity 1 28 0 951 291 128 9 chr11 125134247 125134669 -23648803 - MLT1J LTR MaLR -35 476 5 1758 168 170 0 chr11 125135228 125135610 -23647862 + LTR47A LTR ERVL 6 452 0 1495 206 120 28 chr11 125135632 125135697 -23647775 + MLT1D LTR MaLR 4 62 -443 1503 164 144 126 chr11 125135697 125136275 -23647197 + LTR4 LTR ERV1 1 588 0 1495 206 120 28 chr11 125136275 125136669 -23646803 + MLT1D LTR MaLR 62 505 0 270 415 17 11 chr11 125136819 125136995 -23646477 + L2 LINE L2 2698 2874 -440 330 183 12 0 chr11 125137063 125137145 -23646327 - MER53 DNA DNA -12 177 95 210 279 0 0 chr11 125137418 125137461 -23646011 + L2 LINE L2 3219 3261 -11 533 196 0 0 chr11 125137461 125137563 -23645909 + U13 snRNA snRNA 1 102 -2 268 386 81 18 chr11 125138458 125138839 -23644633 + L2 LINE L2 2489 2893 -421 356 296 26 0 chr11 125138841 125138956 -23644516 + L2 LINE L2 3193 3310 -3 390 354 62 5 chr11 125140017 125140212 -23643260 - L2 LINE L2 -609 2705 2500 203 125 0 42 chr11 125141425 125141473 -23641999 + (TTA)n Simple_repeat Simple_repeat 2 47 0 264 358 35 40 chr11 125142206 125142379 -23641093 + MER5B DNA MER1_type 1 172 -6 210 194 0 56 chr11 125142739 125142811 -23640661 + A-rich Low_complexity Low_complexity 4 71 0 208 277 15 0 chr11 125143044 125143109 -23640363 + (TA)n Simple_repeat Simple_repeat 1 66 0 43751 41 2 2 chr11 125143634 125149779 -23633693 + L1PA4 LINE L1 2 6155 0 1528 94 5 5 chr11 125150387 125150588 -23632884 - AluSq SINE Alu -112 201 1 310 246 32 16 chr11 125150606 125150732 -23632740 + L1ME3A LINE L1 5757 5884 -286 1714 232 65 84 chr11 125150958 125151763 -23631709 + L1MC3 LINE L1 47 835 -5235 2204 103 21 24 chr11 125151773 125152113 -23631359 - MER4E LTR ERV1 0 766 428 292 50 25 0 chr11 125152089 125152129 -23631343 - MER4E LTR ERV1 -725 41 1 * 337 336 42 10 chr11 125152230 125152519 -23630953 - L1M4 LINE L1 -3499 2647 2350 414 310 92 28 chr11 125152523 125152949 -23630523 + HAL1b LINE L1 419 871 -477 1397 151 58 109 chr11 125153305 125153440 -23630032 + AluJb SINE Alu 1 141 -161 1787 104 0 36 chr11 125153440 125153691 -23629781 + AluSx SINE Alu 35 276 -36 1397 151 58 109 chr11 125153691 125153866 -23629606 + AluJb SINE Alu 141 295 -7 10269 198 50 21 chr11 125153964 125156024 -23627448 + L1MC3 LINE L1 3968 5968 -1751 2151 118 0 7 chr11 125156024 125156321 -23627151 - AluSc SINE Alu -14 295 1 10269 198 50 21 chr11 125156321 125156801 -23626671 + L1MC3 LINE L1 5968 6433 -1286 870 158 0 0 chr11 125156801 125156934 -23626538 - FLAM_C SINE Alu 0 133 1 10269 198 50 21 chr11 125156934 125157785 -23625687 + L1MC3 LINE L1 6433 7463 -256 2067 128 3 3 chr11 125157785 125158082 -23625390 + AluSx SINE Alu 1 297 -15 10269 198 50 21 chr11 125158082 125158206 -23625266 + L1MC3 LINE L1 7463 7582 -137 305 222 11 11 chr11 125158241 125158331 -23625141 + L1MC2 LINE L1 6255 6344 0 1525 292 101 51 chr11 125158361 125161006 -23622466 + L1M4 LINE L1 2315 5092 -1054 298 323 48 16 chr11 125161165 125161351 -23622121 - L2 LINE L2 -1407 1907 1716 198 208 0 0 chr11 125162136 125162189 -23621283 + GA-rich Low_complexity Low_complexity 2 54 0 283 317 168 0 chr11 125162716 125162817 -23620655 + L2 LINE L2 3153 3270 -2 187 393 22 0 chr11 125163999 125164088 -23619384 + L2 LINE L2 2230 2320 -994 694 274 5 21 chr11 125164097 125164283 -23619189 - MER63A DNA MER1_type -1 209 27 317 232 82 44 chr11 125164500 125164656 -23618816 + MLT1J LTR MaLR 35 160 -286 1815 219 58 9 chr11 125164742 125165208 -23618264 - Charlie4a DNA MER1_type -2 506 18 1864 214 48 70 chr11 125165526 125165564 -23617908 - L1ME1 LINE L1 -6 6094 6057 2154 96 3 17 chr11 125165564 125165857 -23617615 - AluSc SINE Alu -20 289 1 1864 214 48 70 chr11 125165857 125166416 -23617056 - L1ME1 LINE L1 -43 6057 5510 418 208 72 32 chr11 125166407 125166532 -23616940 - L1ME1 LINE L1 -1521 4559 4430 * 721 281 95 66 chr11 125166607 125167049 -23616423 - L1ME1 LINE L1 -5547 523 69 247 254 92 7 chr11 125167084 125167226 -23616246 - L1MEd LINE L1 -4088 2519 2366 2215 111 0 3 chr11 125167229 125167526 -23615946 - AluSx SINE Alu -16 296 1 607 240 0 0 chr11 125167789 125167914 -23615558 - FLAM_A SINE Alu -9 133 9 412 18 35 0 chr11 125167949 125168006 -23615466 + (TA)n Simple_repeat Simple_repeat 2 60 0 316 279 60 14 chr11 125168016 125168255 -23615217 - L1MEd LINE L1 -4575 1851 1680 182 236 0 14 chr11 125168496 125168568 -23614904 + (TA)n Simple_repeat Simple_repeat 1 71 0 445 241 56 76 chr11 125168690 125168989 -23614483 - L1 LINE L1 -2032 4114 3822 320 340 62 62 chr11 125169054 125169507 -23613965 + L1ME4a LINE L1 5533 5985 -136 1782 141 36 20 chr11 125170593 125170899 -23612573 - AluJo SINE Alu -1 311 1 1120 176 32 0 chr11 125171104 125171325 -23612147 - L1MC1 LINE L1 -323 6010 5783 324 169 0 42 chr11 125171519 125171590 -23611882 + MIR SINE MIR 180 247 -15 377 188 0 50 chr11 125171645 125171725 -23611747 - L1MD2 LINE L1 -462 5897 5822 278 319 26 0 chr11 125171908 125172021 -23611451 - HAL1 LINE L1 -898 1889 1774 409 272 72 92 chr11 125172143 125172568 -23610904 - L1MEd LINE L1 -1307 1480 938 360 284 87 37 chr11 125173026 125173244 -23610228 - MLT1K LTR MaLR -38 550 322 207 184 0 41 chr11 125173681 125173730 -23609742 + (TTTA)n Simple_repeat Simple_repeat 3 49 0 5910 85 22 8 chr11 125173818 125174741 -23608731 + L1PB1 LINE L1 5156 6091 -60 398 300 41 75 chr11 125175719 125176012 -23607460 - L2 LINE L2 -5 3308 3026 2225 309 86 21 chr11 125176043 125177028 -23606444 - L2 LINE L2 -553 2761 1713 192 40 0 0 chr11 125177030 125177055 -23606417 + (TC)n Simple_repeat Simple_repeat 2 26 0 472 295 14 57 chr11 125177218 125177428 -23606044 + LTR41 LTR ERVL 2 202 -571 314 249 163 73 chr11 125177759 125177992 -23605480 + LTR41 LTR ERVL 514 767 -6 306 305 0 0 chr11 125178807 125178889 -23604583 + CT-rich Low_complexity Low_complexity 4 85 0 514 338 66 24 chr11 125178889 125179326 -23604146 + L2 LINE L2 2740 3303 -10 505 209 70 0 chr11 125179961 125180076 -23603396 - FRAM SINE Alu -13 163 41 746 254 61 46 chr11 125180167 125180560 -23602912 + LTR30 LTR ERV1 108 469 -24 311 162 0 58 chr11 125180537 125180624 -23602848 - Alu SINE Alu -258 43 1 * 229 250 0 59 chr11 125181184 125181252 -23602220 + L2 LINE L2 3250 3313 0 1167 155 5 0 chr11 125181997 125182191 -23601281 + L1P5 LINE L1 3 197 -6666 * 14315 193 46 13 chr11 125182188 125185930 -23597542 + L1P5 LINE L1 1071 5191 -1676 225 0 0 0 chr11 125185930 125185955 -23597517 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 14315 193 46 13 chr11 125185955 125187318 -23596154 + L1P5 LINE L1 5191 6507 -360 317 276 23 0 chr11 125187342 125187429 -23596043 + L1MC4 LINE L1 6615 6703 -1339 327 115 13 26 chr11 125187434 125187512 -23595960 + (TA)n Simple_repeat Simple_repeat 2 78 0 2693 96 3 0 chr11 125187512 125187889 -23595583 + L1PB1 LINE L1 5773 6150 -1 211 273 0 65 chr11 125188777 125188854 -23594618 - MIR SINE MIR -107 155 84 466 259 54 63 chr11 125189223 125189317 -23594155 - MIR SINE MIR -14 248 155 2482 140 49 2 chr11 125189317 125189724 -23593748 - MSTB LTR MaLR 0 426 1 466 259 54 63 chr11 125189724 125189834 -23593638 - MIR SINE MIR -107 155 46 771 285 87 0 chr11 125189937 125190144 -23593328 - MIR SINE MIR -30 232 8 25 0 0 0 chr11 125195121 125195146 -23588326 + AT_rich Low_complexity Low_complexity 1 25 0 1356 147 54 22 chr11 125195642 125195927 -23587545 + L1M4c LINE L1 2401 2694 -3688 1796 204 28 61 chr11 125195995 125196653 -23586819 + LTR9 LTR ERV1 1 596 -16 32832 138 15 6 chr11 125196684 125202043 -23581429 + HUERS-P3 LTR ERV1 15 5506 -3413 1410 117 0 0 chr11 125202066 125202254 -23581218 + HUERS-P3 LTR ERV1 7583 7770 -1149 7458 144 23 5 chr11 125202256 125202847 -23580625 + L1MA3 LINE L1 3881 4460 -1845 264 30 0 0 chr11 125202847 125202880 -23580592 + (CA)n Simple_repeat Simple_repeat 2 34 0 7458 144 23 5 chr11 125202880 125204668 -23578804 + L1MA3 LINE L1 4460 6305 0 228 280 9 28 chr11 125204688 125204795 -23578677 + L1M4 LINE L1 5149 5253 -893 207 200 0 0 chr11 125205120 125205165 -23578307 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 575 274 114 22 chr11 125207323 125207684 -23575788 + L1MEc LINE L1 1882 2275 -4121 338 137 0 0 chr11 125207684 125207735 -23575737 - MER58 DNA MER1_type 0 2420 2370 1442 234 125 36 chr11 125207735 125208183 -23575289 + L1MD3 LINE L1 6509 6996 -999 8851 162 39 33 chr11 125208220 125209830 -23573642 - MSTA-int LTR MaLR -32 1619 1 2703 135 54 5 chr11 125209830 125210238 -23573234 - MSTA LTR MaLR 0 428 1 1928 249 75 64 chr11 125210238 125211233 -23572239 + L1MD3 LINE L1 6990 7995 0 2182 158 6 0 chr11 125211429 125211765 -23571707 - L1PB3 LINE L1 -2 6152 5815 53 17 0 0 chr11 125211765 125211825 -23571647 + AT_rich Low_complexity Low_complexity 1 60 0 349 135 64 4 chr11 125211825 125212117 -23571355 + (TA)n Simple_repeat Simple_repeat 1 309 0 491 58 76 35 chr11 125212133 125212305 -23571167 + (TA)n Simple_repeat Simple_repeat 2 180 0 365 78 101 23 chr11 125212340 125212825 -23570647 + (TA)n Simple_repeat Simple_repeat 1 522 0 32 106 0 0 chr11 125212878 125213001 -23570471 + AT_rich Low_complexity Low_complexity 1 123 0 24 96 0 0 chr11 125213196 125213269 -23570203 + AT_rich Low_complexity Low_complexity 1 73 0 42836 42 23 2 chr11 125235996 125242016 -23541456 + L1PA3 LINE L1 3 6155 0 35 24 0 0 chr11 125242348 125242390 -23541082 + AT_rich Low_complexity Low_complexity 1 42 0 253 154 45 9 chr11 125242400 125242510 -23540962 + (TATAA)n Simple_repeat Simple_repeat 1 114 0 313 209 58 23 chr11 125242526 125242612 -23540860 + L1MC4 LINE L1 6616 6704 -1338 324 114 48 9 chr11 125242673 125242778 -23540694 + (TA)n Simple_repeat Simple_repeat 1 109 0 237 167 24 12 chr11 125242792 125242876 -23540596 + (TTATA)n Simple_repeat Simple_repeat 5 89 0 * 316 136 39 10 chr11 125242860 125242963 -23540509 + (TA)n Simple_repeat Simple_repeat 1 106 0 547 71 71 12 chr11 125242987 125243156 -23540316 + (TA)n Simple_repeat Simple_repeat 1 179 0 289 175 47 0 chr11 125243163 125243378 -23540094 + (TATAA)n Simple_repeat Simple_repeat 1 225 0 185 121 50 57 chr11 125243385 125243526 -23539946 + T-rich Low_complexity Low_complexity 4 143 0 * 193 123 77 0 chr11 125243525 125243590 -23539882 + (TA)n Simple_repeat Simple_repeat 1 70 0 382 136 52 26 chr11 125243593 125243748 -23539724 + (TTATA)n Simple_repeat Simple_repeat 5 163 0 40275 47 1 1 chr11 125243795 125249953 -23533519 - L1PA3 LINE L1 0 6155 1 205 167 24 48 chr11 125249961 125250045 -23533427 + (TTATA)n Simple_repeat Simple_repeat 2 83 0 412 101 71 24 chr11 125250045 125250213 -23533259 + (TATAA)n Simple_repeat Simple_repeat 5 180 0 24 0 0 0 chr11 125250219 125250243 -23533229 + AT_rich Low_complexity Low_complexity 1 24 0 416 117 21 69 chr11 125250243 125250431 -23533041 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 275 96 90 13 chr11 125250452 125250608 -23532864 + (TA)n Simple_repeat Simple_repeat 1 168 0 34 24 0 0 chr11 125250624 125250665 -23532807 + AT_rich Low_complexity Low_complexity 1 41 0 2806 149 65 0 chr11 125250682 125251274 -23532198 - L1P5 LINE L1 -360 5794 5163 359 250 20 34 chr11 125251478 125251626 -23531846 + L1MEd LINE L1 997 1142 -4977 290 238 62 12 chr11 125251661 125251741 -23531731 + L1MEd LINE L1 2664 2747 -3382 508 334 31 2 chr11 125251757 125252173 -23531299 + L1MEd LINE L1 2886 3313 -2816 1425 179 40 11 chr11 125252360 125252633 -23530839 + L1MC3 LINE L1 7151 7431 -354 10412 82 17 3 chr11 125252658 125254825 -23528647 - L1PA7 LINE L1 -46 6108 3915 329 298 110 4 chr11 125254812 125255040 -23528432 + L1MEd LINE L1 4303 4554 -1575 * 650 313 71 59 chr11 125255053 125255352 -23528120 + L1MEd LINE L1 4614 4925 -1204 2144 143 3 0 chr11 125255352 125255660 -23527812 + AluSx SINE Alu 1 309 -3 650 313 71 59 chr11 125255660 125255938 -23527534 + L1MEd LINE L1 4925 5198 -931 551 297 91 31 chr11 125255967 125256349 -23527123 + L1MB8 LINE L1 5255 5659 -503 300 249 21 125 chr11 125256526 125256815 -23526657 - L1M4 LINE L1 -2098 4048 3790 328 285 103 43 chr11 125257577 125257945 -23525527 - L1M4 LINE L1 -2414 3732 3343 1834 161 0 0 chr11 125258025 125258332 -23525140 - AluSg SINE Alu 0 307 1 493 184 25 194 chr11 125258380 125258576 -23524896 + MER21B LTR ERV1 1 163 -700 * 1152 227 24 90 chr11 125258572 125258951 -23524521 - MLT2B1 LTR ERVL -163 357 4 3234 128 34 73 chr11 125258953 125259593 -23523879 - ERVL-B1 LTR ERVL -8 5756 5142 1430 210 10 0 chr11 125259597 125259906 -23523566 + L1MB8 LINE L1 5673 5984 -194 2485 276 120 20 chr11 125260349 125261389 -23522083 + L1MCc LINE L1 19 1162 -5261 28 48 0 0 chr11 125261406 125261448 -23522024 + AT_rich Low_complexity Low_complexity 1 42 0 5483 81 75 12 chr11 125261451 125262228 -23521244 - LTR12 LTR ERV1 0 826 1 607 253 121 27 chr11 125262407 125262664 -23520808 - Charlie2 DNA MER1_type -2537 325 45 423 344 58 0 chr11 125262753 125262942 -23520530 + MIR SINE MIR 63 262 0 509 235 74 0 chr11 125263118 125263267 -23520205 - Charlie8 DNA MER1_type -2142 275 116 2313 75 27 3 chr11 125263866 125264159 -23519313 - AluY SINE Alu -11 300 1 219 307 89 45 chr11 125264265 125264444 -23519028 - L2 LINE L2 -258 3014 2828 200 338 14 0 chr11 125264596 125264670 -23518802 + MIR SINE MIR 48 122 -140 6162 75 1 6 chr11 125264674 125266069 -23517403 - L1PA8A LINE L1 -2 6129 4744 4818 124 44 7 chr11 125266069 125266840 -23516632 + L1PA8A LINE L1 3929 4728 -1418 246 257 129 20 chr11 125266844 125266945 -23516527 + MIR SINE MIR 119 230 -32 644 117 0 0 chr11 125266948 125267051 -23516421 + L1P LINE L1 4270 4372 -1774 2231 79 0 7 chr11 125267165 125267445 -23516027 + AluY SINE Alu 21 298 -13 1644 200 62 46 chr11 125267599 125268099 -23515373 + Charlie4a DNA MER1_type 1 508 0 1080 273 95 54 chr11 125268413 125269064 -23514408 + L1ME1 LINE L1 44 721 -5702 899 243 41 45 chr11 125269083 125269851 -23513621 + L1ME1 LINE L1 809 1761 -5180 * 4526 244 75 32 chr11 125269846 125271664 -23511808 + L1ME1 LINE L1 3618 5514 -1427 1281 291 94 0 chr11 125271679 125272074 -23511398 - MER70B LTR ERVL -143 435 4 704 259 5 5 chr11 125272097 125272286 -23511186 + L1ME1 LINE L1 5527 5715 -1226 6382 190 103 16 chr11 125272300 125273616 -23509856 + L1M1 LINE L1 16 1446 -6119 1203 29 29 6 chr11 125273906 125274079 -23509393 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 1824 210 209 48 chr11 125274084 125274841 -23508631 + L1ME1 LINE L1 6080 6956 -5 2535 147 10 10 chr11 125274986 125275401 -23508071 + MER47B DNA MER2_type 4 418 0 288 308 128 15 chr11 125276194 125276327 -23507145 - MIR SINE MIR -12 250 103 224 338 108 25 chr11 125276884 125277041 -23506431 + MIR3 SINE MIR 2 171 -37 29 47 0 0 chr11 125277630 125277673 -23505799 + AT_rich Low_complexity Low_complexity 1 43 0 2666 183 75 8 chr11 125277780 125278299 -23505173 + MLT1F1 LTR MaLR 14 567 0 671 168 179 32 chr11 125278466 125278656 -23504816 + LTR50 LTR ERVL 1 218 -577 554 151 151 0 chr11 125278677 125278783 -23504689 + MLT1F LTR MaLR 421 542 0 572 290 117 37 chr11 125279130 125279430 -23504042 + L1M4c LINE L1 16 339 -6203 6330 241 67 16 chr11 125279477 125280172 -23503300 + L1M4b LINE L1 29 687 -6272 872 86 78 0 chr11 125280172 125280300 -23503172 - MER85 DNA T2_type -1 138 1 6330 241 67 16 chr11 125280300 125280757 -23502715 + L1M4b LINE L1 687 1119 -5840 1593 194 16 7 chr11 125280757 125281061 -23502411 + AluJo SINE Alu 1 307 -5 6330 241 67 16 chr11 125281061 125281381 -23502091 + L1M4b LINE L1 1119 1421 -5538 330 115 0 0 chr11 125281381 125281442 -23502030 + (TA)n Simple_repeat Simple_repeat 1 61 0 6330 241 67 16 chr11 125281442 125282188 -23501284 + L1M4b LINE L1 1421 2353 -4606 2097 135 137 8 chr11 125282209 125282588 -23500884 - MSTA LTR MaLR 0 428 1 3896 237 47 9 chr11 125282697 125283412 -23500060 + L1M4b LINE L1 2853 3605 -3352 201 26 51 26 chr11 125283412 125283451 -23500021 + (TA)n Simple_repeat Simple_repeat 1 40 0 3896 237 47 9 chr11 125283451 125283992 -23499480 + L1M4b LINE L1 3605 4124 -2833 454 184 19 19 chr11 125283993 125284096 -23499376 + MER4A LTR ERV1 1 103 -561 380 259 115 27 chr11 125284124 125284357 -23499115 + LTR34 LTR ERV1 105 280 -317 279 0 0 0 chr11 125284438 125284469 -23499003 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 410 228 43 52 chr11 125284762 125285006 -23498466 + L1M4c LINE L1 2357 2608 -4036 * 9123 160 30 18 chr11 125285002 125287778 -23495694 + L1MA9 LINE L1 4308 7122 -1 342 236 0 18 chr11 125288037 125288147 -23495325 + (TA)n Simple_repeat Simple_repeat 1 108 0 357 271 12 71 chr11 125289012 125289182 -23494290 - MER112 DNA MER1_type -8 252 93 204 97 0 0 chr11 125289186 125289217 -23494255 + (TG)n Simple_repeat Simple_repeat 1 31 0 204 40 0 0 chr11 125289579 125289604 -23493868 + (TG)n Simple_repeat Simple_repeat 2 26 0 194 0 39 0 chr11 125289647 125289673 -23493799 + (TGGGGG)n Simple_repeat Simple_repeat 5 31 0 388 288 60 38 chr11 125290951 125291135 -23492337 + MER5A DNA MER1_type 2 189 0 286 428 6 11 chr11 125291395 125291575 -23491897 + L2 LINE L2 2487 2665 -649 316 311 0 0 chr11 125291577 125291651 -23491821 - L2 LINE L2 -3 3310 3237 6914 92 44 19 chr11 125291994 125293096 -23490376 - MER4-int LTR ERV1 -1633 4965 3837 1893 181 28 58 chr11 125293095 125293630 -23489842 - MER4-int LTR ERV1 -2917 3681 3163 * 490 233 26 105 chr11 125293631 125293764 -23489708 + L2 LINE L2 3098 3207 -106 2079 82 0 0 chr11 125293764 125294020 -23489452 - AluSc SINE Alu -15 294 39 490 233 26 105 chr11 125294020 125294114 -23489358 + L2 LINE L2 3207 3307 -6 606 297 121 53 chr11 125294126 125294478 -23488994 - L2 LINE L2 -688 2626 2233 2445 79 0 0 chr11 125294478 125294782 -23488690 + AluY SINE Alu 1 304 -7 606 297 121 53 chr11 125294782 125294900 -23488572 - L2 LINE L2 -1081 2233 2124 215 364 30 47 chr11 125295214 125295450 -23488022 - L2 LINE L2 -2569 745 514 1776 238 3 6 chr11 125295539 125295904 -23487568 - MLT1A1 LTR MaLR -1 364 1 336 167 33 0 chr11 125295904 125295964 -23487508 - MLT1A1 LTR MaLR -303 62 1 1215 206 50 18 chr11 125296162 125296439 -23487033 + L1MD1 LINE L1 5904 6189 -53 13771 218 31 15 chr11 125296448 125301755 -23481717 - L1PA16 LINE L1 -7 6862 1423 1336 204 15 48 chr11 125302188 125302522 -23480950 - L1PA16 LINE L1 -6083 766 444 230 348 34 34 chr11 125302546 125302664 -23480808 - L1M2 LINE L1 -6066 783 666 1040 323 38 3 chr11 125302758 125303126 -23480346 - L1M2 LINE L1 -6399 450 70 536 163 0 0 chr11 125303130 125303222 -23480250 - AluSp/q SINE Alu -3 310 219 305 192 64 39 chr11 125303225 125303303 -23480169 - L1M2 LINE L1 -6768 81 2 420 81 0 0 chr11 125303305 125303367 -23480105 + L1MD2 LINE L1 6288 6349 -10 702 275 35 60 chr11 125303805 125304169 -23479303 + L1ME LINE L1 737 1106 -5310 1771 218 48 46 chr11 125304170 125304647 -23478825 - MLT1D LTR MaLR 0 505 28 3088 197 35 28 chr11 125304647 125305913 -23477559 - L1MCa LINE L1 -4851 1194 474 1062 270 20 34 chr11 125305905 125306044 -23477428 + L1ME LINE L1 2355 2494 -3932 * 2083 105 30 13 chr11 125306044 125306164 -23477308 + AluSg SINE Alu 1 118 -192 351 0 0 0 chr11 125306164 125306203 -23477269 + (CA)n Simple_repeat Simple_repeat 2 40 0 2083 105 30 13 chr11 125306203 125306387 -23477085 + AluSg SINE Alu 118 310 0 1603 180 43 26 chr11 125306390 125306695 -23476777 + AluJb SINE Alu 1 310 -2 1062 270 20 34 chr11 125306695 125307082 -23476390 + L1ME LINE L1 2496 2875 -3551 1734 120 19 71 chr11 125307144 125307469 -23476003 - MER44D DNA MER2_type 0 609 32 1526 219 39 52 chr11 125307471 125307878 -23475594 + MLT1C LTR MaLR 64 465 -2 489 262 0 0 chr11 125307881 125308007 -23475465 + L1ME LINE L1 2871 2996 -3430 535 358 55 14 chr11 125309497 125309863 -23473609 + L2 LINE L2 2482 2862 -452 2206 115 0 0 chr11 125310132 125310428 -23473044 - AluSx SINE Alu -16 296 1 222 333 0 0 chr11 125310428 125310494 -23472978 - L2 LINE L2 -3 3269 3204 517 233 167 42 chr11 125310672 125310912 -23472560 - L2 LINE L2 -239 3074 2805 278 260 14 14 chr11 125310937 125311010 -23472462 + L2 LINE L2 3236 3308 -5 463 196 134 0 chr11 125311043 125311155 -23472317 + MER103 DNA DNA 37 163 -3 21 0 0 0 chr11 125311460 125311481 -23471991 + AT_rich Low_complexity Low_complexity 1 21 0 1275 222 4 13 chr11 125312090 125312329 -23471143 - MER8 DNA MER2_type -2 237 1 710 262 60 39 chr11 125312839 125313072 -23470400 - MIR SINE MIR 0 262 25 181 376 59 0 chr11 125313388 125313473 -23469999 - L2 LINE L2 -47 3225 3136 712 246 0 37 chr11 125313694 125313885 -23469587 + MER5A DNA MER1_type 5 188 -1 593 49 12 0 chr11 125313987 125314068 -23469404 + (TAGA)n Simple_repeat Simple_repeat 4 85 0 294 289 94 39 chr11 125314979 125315107 -23468365 - L2 LINE L2 -1 3271 3137 507 339 123 32 chr11 125315269 125315611 -23467861 + L3 LINE CR1 767 1139 -438 202 351 0 0 chr11 125315961 125316035 -23467437 + A-rich Low_complexity Low_complexity 1 74 0 351 0 0 0 chr11 125316401 125316440 -23467032 + (TTTTA)n Simple_repeat Simple_repeat 1 39 0 2210 117 0 13 chr11 125317406 125317715 -23465757 - AluSq SINE Alu -7 306 2 1028 154 12 0 chr11 125317719 125317881 -23465591 - AluSg/x SINE Alu -14 298 135 2542 158 7 2 chr11 125317883 125318320 -23465152 - L1MB3 LINE L1 -47 6136 5698 246 286 126 17 chr11 125318438 125318557 -23464915 + L3b LINE CR1 1184 1315 -268 574 115 0 0 chr11 125318874 125318992 -23464480 + AluSg/x SINE Alu 205 322 0 312 289 171 94 chr11 125319053 125319403 -23464069 - L3 LINE CR1 -190 1387 1011 782 157 88 0 chr11 125319405 125319552 -23463920 - MER3 DNA MER1_type -1 208 49 9641 196 37 44 chr11 125319912 125319951 -23463521 + L1MB2 LINE L1 2797 2835 -3336 2191 115 10 0 chr11 125319951 125320256 -23463216 + AluSg SINE Alu 2 309 -1 9641 196 37 44 chr11 125320256 125322454 -23461018 + L1MB2 LINE L1 2835 5040 -1131 303 54 0 0 chr11 125322454 125322491 -23460981 + U2 snRNA snRNA 1 37 -151 9641 196 37 44 chr11 125322491 125323583 -23459889 + L1MB2 LINE L1 5040 6138 -33 1086 205 70 26 chr11 125323747 125323976 -23459496 + MER8 DNA MER2_type 1 239 0 504 315 82 61 chr11 125324745 125325062 -23458410 - MLT1K LTR MaLR -10 578 247 2190 93 4 0 chr11 125325062 125325362 -23458110 + AluSg SINE Alu 1 301 0 504 315 82 61 chr11 125325362 125325472 -23458000 - MLT1K LTR MaLR -341 247 141 297 382 15 7 chr11 125326193 125326329 -23457143 + MER5B DNA MER1_type 17 153 -25 619 164 249 34 chr11 125327248 125327425 -23456047 + MER58C DNA MER1_type 1 215 0 921 202 29 34 chr11 125327567 125327775 -23455697 + MER63A DNA MER1_type 1 207 -3 294 351 30 55 chr11 125327795 125328030 -23455442 + MIR SINE MIR 5 232 -30 203 314 49 10 chr11 125328315 125328417 -23455055 + L2 LINE L2 3208 3313 0 576 281 158 27 chr11 125328462 125328683 -23454789 + MIR SINE MIR 13 262 0 348 189 0 33 chr11 125328974 125329064 -23454408 + L1MC4 LINE L1 6952 7038 -1004 511 169 0 0 chr11 125329147 125329230 -23454242 + MLT1A1 LTR MaLR 1 83 -282 296 237 118 0 chr11 125330355 125330448 -23453024 + L2 LINE L2 1922 2025 -1289 1158 197 78 17 chr11 125330833 125331128 -23452344 + MER33 DNA MER1_type 1 313 -11 643 317 30 17 chr11 125331963 125332193 -23451279 - MIR SINE MIR -28 234 2 1932 144 57 38 chr11 125332440 125332808 -23450664 + THE1C LTR MaLR 1 375 0 322 258 11 11 chr11 125333613 125333702 -23449770 + GA-rich Low_complexity Low_complexity 3 91 0 416 310 23 0 chr11 125334417 125334546 -23448926 - MIR SINE MIR -84 178 47 21 0 0 0 chr11 125335212 125335233 -23448239 + AT_rich Low_complexity Low_complexity 1 21 0 196 274 20 0 chr11 125335528 125335579 -23447893 - MER5A DNA MER1_type 0 189 138 2548 186 9 13 chr11 125335585 125336048 -23447424 - MER73 LTR ERVL 0 644 184 367 203 0 0 chr11 125336049 125336113 -23447359 - L1ME LINE L1 -5541 529 466 924 128 7 7 chr11 125336113 125336262 -23447210 - MER73 LTR ERVL -460 184 36 240 0 0 26 chr11 125336262 125336296 -23447176 + L1PA6 LINE L1 6117 6150 0 225 0 0 0 chr11 125336296 125336321 -23447151 + (TA)n Simple_repeat Simple_repeat 1 25 0 1188 252 32 5 chr11 125336364 125336733 -23446739 - L1MEc LINE L1 -4688 1708 1330 606 172 0 0 chr11 125336740 125336839 -23446633 - AluJ/FLAM SINE Alu -213 99 1 3249 207 17 8 chr11 125336839 125337486 -23445986 - MLT1A1-int LTR MaLR -1081 654 2 1315 237 39 20 chr11 125337487 125337845 -23445627 - MLT1A1 LTR MaLR 0 365 1 341 305 84 7 chr11 125338003 125338110 -23445362 - HAL1 LINE L1 -179 2328 2204 464 0 18 0 chr11 125338110 125338166 -23445306 + (CA)n Simple_repeat Simple_repeat 2 58 0 341 305 84 7 chr11 125338166 125338212 -23445260 - HAL1 LINE L1 -303 2204 2163 1753 205 59 52 chr11 125338228 125338706 -23444766 - MLT1D LTR MaLR -24 481 1 762 258 101 11 chr11 125338707 125338975 -23444497 - HAL1 LINE L1 -369 2138 1847 907 181 12 0 chr11 125338990 125339150 -23444322 - MER58A DNA MER1_type -18 206 45 356 184 115 0 chr11 125339159 125339246 -23444226 + L1MD1 LINE L1 4762 4858 -1288 28 0 0 0 chr11 125339246 125339274 -23444198 + AT_rich Low_complexity Low_complexity 1 28 0 6925 162 21 4 chr11 125339274 125341527 -23441945 - L1PA16 LINE L1 -8 6158 3869 2727 219 40 41 chr11 125341530 125342289 -23441183 + L1MD1 LINE L1 5450 6207 -35 280 226 108 20 chr11 125342342 125342444 -23441028 - HAL1 LINE L1 -1245 1262 1152 539 248 165 14 chr11 125342453 125342671 -23440801 - L1ME1 LINE L1 -9 6157 5907 751 262 34 15 chr11 125342673 125342879 -23440593 + LTR16A LTR ERVL 241 450 0 488 277 102 92 chr11 125342884 125343415 -23440057 - HAL1 LINE L1 -1091 1416 881 207 0 0 0 chr11 125343442 125343465 -23440007 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2355 47 11 0 chr11 125343466 125343742 -23439730 - AluY SINE Alu -32 279 1 338 313 92 28 chr11 125344411 125344660 -23438812 - L1 LINE L1 -2545 3665 3401 2215 84 0 7 chr11 125345176 125345483 -23437989 + AluY SINE Alu 1 305 0 598 294 66 15 chr11 125345754 125345951 -23437521 + MIR SINE MIR 48 254 -8 7650 79 27 10 chr11 125346219 125347258 -23436214 - MER11C LTR ERVK -14 1057 1 41 48 0 0 chr11 125347775 125347837 -23435635 + AT_rich Low_complexity Low_complexity 1 62 0 * 490 319 42 14 chr11 125347830 125348046 -23435426 - MIR SINE MIR -1 261 40 2043 112 0 14 chr11 125348149 125348444 -23435028 + AluSx SINE Alu 1 291 -21 26 0 0 0 chr11 125349585 125349611 -23433861 + AT_rich Low_complexity Low_complexity 1 26 0 770 178 6 0 chr11 125349629 125349792 -23433680 + CT-rich Low_complexity Low_complexity 1 164 0 1781 159 3 27 chr11 125349792 125349806 -23433666 - MER44D DNA MER2_type -1888 603 590 2429 152 65 18 chr11 125349806 125350313 -23433159 - L1MA9 LINE L1 -19 6293 5763 1781 159 3 27 chr11 125350313 125350631 -23432841 - MER44D DNA MER2_type -1901 590 9 1254 189 7 72 chr11 125350643 125350950 -23432522 - L1M2 LINE L1 -515 5797 5511 * 1505 252 16 0 chr11 125350945 125351322 -23432150 - L1 LINE L1 -3439 2771 2389 3695 233 85 13 chr11 125351351 125353123 -23430349 - L1 LINE L1 -4283 1928 1 238 217 0 50 chr11 125353673 125353733 -23429739 + MIR SINE MIR 105 161 -101 280 366 26 0 chr11 125353920 125354078 -23429394 - MIR3 SINE MIR -67 141 5 205 209 23 0 chr11 125354117 125354160 -23429312 + (TATG)n Simple_repeat Simple_repeat 2 45 0 303 196 0 0 chr11 125354160 125354216 -23429256 + L1MC4 LINE L1 6648 6703 -1339 * 336 281 0 42 chr11 125354204 125354300 -23429172 - L1MC4 LINE L1 -1337 6705 6614 1793 171 23 3 chr11 125354879 125355178 -23428294 + AluJb SINE Alu 1 305 -7 25 51 0 0 chr11 125355262 125355301 -23428171 + AT_rich Low_complexity Low_complexity 1 39 0 2145 166 38 26 chr11 125355502 125355929 -23427543 - MSTB1 LTR MaLR 0 432 1 23 0 0 0 chr11 125355934 125355957 -23427515 + AT_rich Low_complexity Low_complexity 1 23 0 34 84 0 0 chr11 125356321 125356404 -23427068 + AT_rich Low_complexity Low_complexity 1 83 0 2072 117 0 19 chr11 125356922 125357252 -23426220 + AluSc SINE Alu 1 309 0 358 263 68 107 chr11 125357493 125357774 -23425698 - MLT1I LTR MaLR -13 396 127 1472 178 40 25 chr11 125357774 125357796 -23425676 - L1MA8 LINE L1 -97 6194 6174 1570 144 104 45 chr11 125357796 125358150 -23425322 - THE1C LTR MaLR 0 375 1 1472 178 40 25 chr11 125358150 125358448 -23425024 - L1MA8 LINE L1 -117 6174 5869 297 167 0 0 chr11 125358523 125358577 -23424895 - L1MC4 LINE L1 -1 8041 7988 1982 245 57 7 chr11 125358584 125359636 -23423836 - L1MC4 LINE L1 -143 7899 6647 232 231 19 0 chr11 125359636 125359688 -23423784 + (TA)n Simple_repeat Simple_repeat 1 53 0 544 202 0 0 chr11 125359688 125359780 -23423692 + MER2 DNA MER2_type 1 92 -253 251 271 34 0 chr11 125359780 125359839 -23423633 - MER2 DNA MER2_type -2 343 283 435 202 128 0 chr11 125359935 125360044 -23423428 - L1MD3 LINE L1 -1433 6562 6440 617 280 38 101 chr11 125361219 125361637 -23421835 - MLT1I LTR MaLR 0 409 18 253 251 150 142 chr11 125361725 125361992 -23421480 - L2 LINE L2 -3 3310 3042 1947 182 121 40 chr11 125362006 125362461 -23421011 + MLT1D LTR MaLR 1 492 -13 3035 277 80 13 chr11 125362461 125363475 -23419997 - L2 LINE L2 -285 3028 1949 1633 165 54 4 chr11 125363476 125363755 -23419717 + AluJb SINE Alu 1 293 -19 327 298 153 8 chr11 125364306 125364430 -23419042 + MIR SINE MIR 12 153 -109 455 269 291 0 chr11 125365333 125365567 -23417905 - L2 LINE L2 -1349 1965 1664 676 167 13 6 chr11 125365948 125366088 -23417384 + (TCTA)n Simple_repeat Simple_repeat 2 145 -13 249 33 0 0 chr11 125366088 125366118 -23417354 + (TC)n Simple_repeat Simple_repeat 1 30 0 676 167 13 6 chr11 125366118 125366133 -23417339 + (TCTA)n Simple_repeat Simple_repeat 145 158 0 331 241 241 32 chr11 125366579 125366737 -23416735 + MIR SINE MIR 1 191 -71 210 373 0 0 chr11 125367083 125367158 -23416314 + MIR3 SINE MIR 106 180 -28 430 303 30 12 chr11 125367334 125367499 -23415973 - MER117 DNA MER1_type -29 168 1 203 308 0 19 chr11 125368911 125368963 -23414509 + MIR SINE MIR 47 97 -111 540 227 17 17 chr11 125369004 125369123 -23414349 + MER69 DNA AcHobo 29 147 -1079 392 201 47 7 chr11 125369124 125369273 -23414199 + (TA)n Simple_repeat Simple_repeat 2 156 0 265 195 12 12 chr11 125369375 125369457 -23414015 + (CA)n Simple_repeat Simple_repeat 2 83 0 225 65 0 0 chr11 125369456 125369487 -23413985 + (TC)n Simple_repeat Simple_repeat 1 31 0 * 878 272 19 0 chr11 125369599 125369812 -23413660 + MIR SINE MIR 12 228 -34 2251 140 17 98 chr11 125370548 125371020 -23412452 + Tigger2a DNA MER2_type 1 434 0 522 292 93 13 chr11 125371020 125371246 -23412226 + MIR SINE MIR 15 258 -4 22 56 0 0 chr11 125371766 125371802 -23411670 + AT_rich Low_complexity Low_complexity 1 36 0 1710 124 40 4 chr11 125372068 125372343 -23411129 - MER47A DNA MER2_type 0 366 82 746 161 0 0 chr11 125373697 125373815 -23409657 + FLAM_C SINE Alu 1 118 -25 2343 89 0 3 chr11 125373987 125374289 -23409183 + AluSc SINE Alu 1 301 -8 1992 146 20 18 chr11 125375630 125375972 -23407500 + MER2 DNA MER2_type 1 343 -1 470 183 67 39 chr11 125376146 125376250 -23407222 + AluSc SINE Alu 106 212 -97 * 628 215 0 8 chr11 125376243 125376364 -23407108 + AluJb SINE Alu 176 295 -17 466 170 21 0 chr11 125376644 125376738 -23406734 + L1MB3 LINE L1 6078 6173 -10 26 30 0 0 chr11 125378427 125378460 -23405012 + AT_rich Low_complexity Low_complexity 1 33 0 412 337 176 33 chr11 125378766 125379164 -23404308 - L2 LINE L2 -5 3308 2854 324 280 67 36 chr11 125379835 125380110 -23403362 - L1M4 LINE L1 -1072 5074 4794 913 291 62 43 chr11 125380197 125380827 -23402645 - L1M4 LINE L1 -1905 4241 3600 406 255 126 65 chr11 125380902 125381353 -23402119 - L1M4 LINE L1 -2664 3482 2993 495 248 101 53 chr11 125381372 125381690 -23401782 + L1MD1 LINE L1 2696 3028 -3118 407 260 123 26 chr11 125381696 125381923 -23401549 + L1MD1 LINE L1 3112 3360 -2786 877 266 92 21 chr11 125381950 125382377 -23401095 + L1MD1 LINE L1 5444 5906 -336 21 0 0 0 chr11 125382603 125382624 -23400848 + AT_rich Low_complexity Low_complexity 1 21 0 2295 103 3 0 chr11 125382674 125382975 -23400497 + AluSx SINE Alu 1 302 -10 795 233 66 40 chr11 125383012 125383389 -23400083 + L1ME3 LINE L1 3862 4248 -1898 240 235 39 0 chr11 125383692 125383743 -23399729 + Tigger5 DNA MER2_type 3 55 -2268 447 169 0 0 chr11 125383753 125383830 -23399642 + Tigger5 DNA MER2_type 2237 2313 -10 344 197 49 42 chr11 125383845 125383987 -23399485 + L1ME3 LINE L1 4312 4454 -1692 1184 263 95 62 chr11 125383990 125384899 -23398573 + L1ME3 LINE L1 5109 6046 -116 656 184 0 0 chr11 125385014 125385123 -23398349 + FLAM_A SINE Alu 25 133 -9 231 263 50 12 chr11 125385128 125385208 -23398264 + MIR SINE MIR 180 262 0 336 188 25 62 chr11 125385706 125385786 -23397686 - L1ME LINE L1 -564 5557 5481 1866 157 0 10 chr11 125386963 125387275 -23396197 + AluJb SINE Alu 4 312 0 1329 103 20 10 chr11 125387339 125387534 -23395938 + MER30 DNA MER1_type 1 197 -33 429 229 123 71 chr11 125387788 125387840 -23395632 - MIR SINE MIR -5 257 209 1016 165 58 10 chr11 125387840 125388046 -23395426 + MER20 DNA MER1_type 4 219 0 429 229 123 71 chr11 125388046 125388163 -23395309 - MIR SINE MIR -53 209 79 2362 76 10 7 chr11 125388417 125388720 -23394752 - AluY SINE Alu -7 304 1 3743 208 15 28 chr11 125388745 125388806 -23394666 - L1ME1 LINE L1 -5 6161 6101 1849 82 0 12 chr11 125388806 125389050 -23394422 - AluSg SINE Alu -21 289 49 3743 208 15 28 chr11 125389050 125389844 -23393628 - L1ME1 LINE L1 -65 6101 5317 2017 170 49 10 chr11 125389863 125389890 -23393582 - MLT2D LTR ERVL -10 404 380 378 0 0 0 chr11 125389890 125389932 -23393540 + (TG)n Simple_repeat Simple_repeat 2 43 0 2017 170 49 10 chr11 125389932 125390293 -23393179 - MLT2D LTR ERVL -34 380 1 1715 192 38 0 chr11 125390293 125390689 -23392783 - L1ME1 LINE L1 -835 5311 4901 371 291 0 0 chr11 125391411 125391497 -23391975 - MER91A DNA MER1_type 0 196 111 1622 91 41 0 chr11 125391598 125391819 -23391653 + MER30 DNA MER1_type 1 230 0 1354 138 112 9 chr11 125391840 125392072 -23391400 - MLT1A1 LTR MaLR 0 365 110 432 330 8 0 chr11 125393079 125393197 -23390275 + MIR SINE MIR 30 148 -114 1823 226 99 81 chr11 125393290 125394015 -23389457 - L2 LINE L2 -818 2496 1759 244 278 111 0 chr11 125394038 125394110 -23389362 - MIR SINE MIR 0 262 183 5234 162 58 29 chr11 125394126 125394534 -23388938 - Tigger6a DNA MER2_type -515 1082 688 2215 102 17 0 chr11 125394534 125394827 -23388645 - AluSg SINE Alu -12 298 1 5234 162 58 29 chr11 125394827 125395469 -23388003 - Tigger6a DNA MER2_type -909 688 1 2009 116 54 43 chr11 125395757 125396128 -23387344 - THE1C LTR MaLR 0 375 1 752 241 0 2 chr11 125396231 125396431 -23387041 + L1ME2 LINE L1 5591 5821 -345 1783 162 52 0 chr11 125396432 125396797 -23386675 + L1MA9 LINE L1 5919 6302 -10 554 189 43 10 chr11 125396895 125397048 -23386424 + L1ME2 LINE L1 5793 5946 -216 2196 151 67 43 chr11 125397369 125397833 -23385639 - MER67C LTR ERV1 -235 475 1 266 263 63 53 chr11 125398133 125398228 -23385244 - L2 LINE L2 -38 3234 3139 255 309 73 18 chr11 125398389 125398512 -23384960 - MER5A DNA MER1_type -50 139 11 1057 269 74 61 chr11 125398579 125399056 -23384416 - L2 LINE L2 -643 2671 2183 2368 173 54 5 chr11 125399056 125399461 -23384011 - MSTB LTR MaLR -1 425 1 1057 269 74 61 chr11 125399461 125399607 -23383865 - L2 LINE L2 -1131 2183 2040 747 311 93 27 chr11 125399611 125399987 -23383485 + MLT1K LTR MaLR 188 588 0 336 336 37 0 chr11 125401395 125401502 -23381970 - L2 LINE L2 -14 3258 3148 348 250 211 0 chr11 125402501 125402605 -23380867 + MIR SINE MIR 36 161 -101 606 284 129 9 chr11 125402608 125402840 -23380632 + MIR SINE MIR 3 262 0 204 121 30 0 chr11 125403687 125403720 -23379752 + CT-rich Low_complexity Low_complexity 2 35 0 255 191 103 15 chr11 125404128 125404196 -23379276 - L1ME4a LINE L1 -69 6052 5979 292 275 9 37 chr11 125404203 125404312 -23379160 + MIR SINE MIR 75 180 -82 11624 141 21 15 chr11 125404334 125404506 -23378966 - L1MA3 LINE L1 0 6305 6136 1986 110 0 75 chr11 125404506 125404824 -23378648 - AluSx SINE Alu -18 294 1 11624 141 21 15 chr11 125404824 125407741 -23375731 - L1MA3 LINE L1 -169 6136 3197 20459 34 4 0 chr11 125407743 125410175 -23373297 + L1P LINE L1 2729 5169 -977 2816 13 0 0 chr11 125410175 125410478 -23372994 + AluYb8 SINE Alu 1 303 -15 24 96 0 0 chr11 125411037 125411110 -23372362 + AT_rich Low_complexity Low_complexity 1 73 0 38961 48 29 1 chr11 125419807 125424627 -23358845 + L1P LINE L1 3 4954 -1192 2832 13 0 3 chr11 125430029 125430341 -23353131 - AluYb8 SINE Alu -7 311 1 272 287 103 97 chr11 125430364 125430664 -23352808 - L2 LINE L2 0 3272 2971 208 163 0 23 chr11 125430740 125430783 -23352689 + (TG)n Simple_repeat Simple_repeat 1 42 0 182 244 0 0 chr11 125431432 125431473 -23351999 + L2 LINE L2 2607 2647 -667 190 241 0 69 chr11 125431999 125432057 -23351415 + MIR3 SINE MIR 141 194 -14 409 269 30 60 chr11 125432706 125432907 -23350565 + L1MC4 LINE L1 7708 7902 -140 2141 182 17 11 chr11 125433317 125433679 -23349793 + MLT1A1 LTR MaLR 1 364 -1 526 240 33 8 chr11 125435095 125435216 -23348256 - MLT1I LTR MaLR 0 409 286 835 204 6 6 chr11 125435615 125435772 -23347700 + Tigger1 DNA MER2_type 1 157 -2261 * 1199 173 19 9 chr11 125435761 125435975 -23347497 + Tigger1 DNA MER2_type 2202 2417 -1 290 322 11 40 chr11 125436847 125437021 -23346451 + CT-rich Low_complexity Low_complexity 3 171 0 436 281 116 0 chr11 125438218 125438417 -23345055 + MIR SINE MIR 5 226 -36 6037 70 6 1 chr11 125438417 125439206 -23344266 - L1PA7 LINE L1 -1130 5016 4224 7505 55 4 6 chr11 125439206 125440342 -23343130 + L1PA7 LINE L1 5019 6153 -1 209 283 0 0 chr11 125441073 125441119 -23342353 - MIR3 SINE MIR -54 154 109 1906 212 59 4 chr11 125443947 125444377 -23339095 + MLT2B2 LTR ERVL 1 467 -53 216 246 49 0 chr11 125445060 125445121 -23338351 + CT-rich Low_complexity Low_complexity 3 66 0 887 207 6 0 chr11 125446057 125446226 -23337246 - MSTB2 LTR MaLR -47 410 241 225 139 0 0 chr11 125446226 125446269 -23337203 + (A)n Simple_repeat Simple_repeat 1 43 0 546 271 23 0 chr11 125446274 125446407 -23337065 - MSTB2 LTR MaLR -229 228 93 2308 237 72 2 chr11 125447172 125447717 -23335755 - MER119 DNA MER1_type 0 583 1 482 226 210 11 chr11 125448081 125448267 -23335205 + MIR SINE MIR 3 225 -37 265 375 10 10 chr11 125448260 125448364 -23335108 - L2 LINE L2 -35 3237 3134 * 705 276 121 31 chr11 125448545 125449091 -23334381 - L2 LINE L2 -277 3036 2378 192 291 48 75 chr11 125451162 125451457 -23332015 - L2 LINE L2 -341 2973 2687 1265 151 48 2 chr11 125452339 125452626 -23330846 + MER2 DNA MER2_type 1 345 0 379 309 57 23 chr11 125452841 125453069 -23330403 - MIR SINE MIR -15 247 17 224 336 164 0 chr11 125454236 125454364 -23329108 + MIR3 SINE MIR 1 149 -59 405 223 43 13 chr11 125454377 125454520 -23328952 - MIR SINE MIR -32 230 3 577 221 174 7 chr11 125455593 125455742 -23327730 - MIR3 SINE MIR -15 193 20 342 277 188 0 chr11 125456630 125456731 -23326741 - MIR3 SINE MIR -54 154 35 199 333 29 14 chr11 125456851 125456920 -23326552 - L2 LINE L2 -3 3269 3200 265 280 120 0 chr11 125459419 125459519 -23323953 + L2 LINE L2 3136 3247 -25 1526 110 25 57 chr11 125459625 125459906 -23323566 + L1MA8 LINE L1 6015 6286 -5 397 155 0 0 chr11 125459941 125460012 -23323460 + MER116 DNA Mariner 9 79 -1 210 197 127 14 chr11 125460058 125460129 -23323343 - MIR SINE MIR -6 256 178 222 227 143 42 chr11 125460418 125460537 -23322935 + L2 LINE L2 3142 3272 0 403 309 0 0 chr11 125462011 125462189 -23321283 + G-rich Low_complexity Low_complexity 1 178 0 414 303 0 0 chr11 125462254 125462399 -23321073 + G-rich Low_complexity Low_complexity 1 145 0 502 180 60 0 chr11 125463939 125464039 -23319433 - MER4D LTR ERV1 -258 645 540 * 720 154 19 66 chr11 125464036 125464217 -23319255 - MER4E LTR ERV1 -592 280 1 1202 112 61 0 chr11 125464217 125464413 -23319059 + LTR54 LTR ERV1 303 510 0 720 217 12 124 chr11 125464413 125464670 -23318802 + MER39 LTR ERV1 455 682 -25 627 183 61 0 chr11 125464677 125464808 -23318664 + MER34C LTR ERV1 447 585 0 225 128 103 60 chr11 125465784 125465901 -23317571 + (ATTAG)n Simple_repeat Simple_repeat 4 125 0 242 333 105 12 chr11 125465985 125466147 -23317325 + MER20B DNA MER1_type 2 178 -605 405 189 0 0 chr11 125466180 125466254 -23317218 + L1MC1 LINE L1 5786 5859 -474 413 283 135 60 chr11 125466946 125467347 -23316125 + L1MC4a LINE L1 5291 5747 -2061 195 100 0 0 chr11 125467347 125467377 -23316095 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 413 283 135 60 chr11 125467377 125467530 -23315942 + L1MC4a LINE L1 5747 5887 -1921 238 230 115 46 chr11 125467675 125467762 -23315710 - L2 LINE L2 -2067 1247 1155 22 35 0 0 chr11 125468276 125468305 -23315167 + AT_rich Low_complexity Low_complexity 1 29 0 215 254 0 18 chr11 125468379 125468434 -23315038 - MIR SINE MIR -6 256 203 1318 73 11 0 chr11 125468700 125468879 -23314593 + L1P4 LINE L1 5359 5539 -626 384 328 57 89 chr11 125469360 125469674 -23313798 - L2 LINE L2 -36 3236 2933 227 362 85 23 chr11 125469738 125469915 -23313557 - L2 LINE L2 -463 2851 2664 3045 145 2 5 chr11 125470141 125470589 -23312883 + ERVL LTR ERVL 4341 4787 -977 726 172 8 0 chr11 125470599 125470721 -23312751 + ERVL LTR ERVL 5579 5701 -63 659 318 90 4 chr11 125471054 125471287 -23312185 + MIR SINE MIR 2 254 -8 1721 173 92 6 chr11 125471444 125471779 -23311693 - MER47A DNA MER2_type 0 366 3 259 350 19 38 chr11 125472034 125472194 -23311278 + L2 LINE L2 3100 3256 -16 957 311 39 68 chr11 125472487 125473345 -23310127 + L2 LINE L2 2449 3282 -31 843 131 50 31 chr11 125473671 125473831 -23309641 - AluSx SINE Alu -148 164 2 1861 141 7 20 chr11 125474183 125474488 -23308984 - AluSx SINE Alu -11 301 1 22 0 0 0 chr11 125474496 125474518 -23308954 + AT_rich Low_complexity Low_complexity 1 22 0 302 281 43 50 chr11 125475282 125475421 -23308051 - L1MC/D LINE L1 -2000 5808 5671 407 277 159 48 chr11 125476098 125476412 -23307060 - L2 LINE L2 -1 3312 2964 240 35 0 0 chr11 125476580 125476609 -23306863 + (TA)n Simple_repeat Simple_repeat 1 29 0 614 239 36 154 chr11 125476961 125477401 -23306071 - L2 LINE L2 0 3313 2926 419 293 164 32 chr11 125478216 125478739 -23304733 - L1MC/D LINE L1 -468 5653 5254 247 164 15 15 chr11 125478912 125478979 -23304493 + (TATATG)n Simple_repeat Simple_repeat 5 71 0 993 162 12 12 chr11 125479323 125479490 -23303982 + AluJb SINE Alu 133 299 -13 366 226 286 0 chr11 125479642 125479775 -23303697 + MIR SINE MIR 52 222 -40 400 322 8 0 chr11 125479897 125480018 -23303454 + MARNA DNA Mariner 89 210 -376 523 243 7 43 chr11 125480735 125480875 -23302597 + MIR SINE MIR 32 166 -96 623 261 43 73 chr11 125480918 125481152 -23302320 - MIR SINE MIR -32 230 4 9636 42 6 2 chr11 125482008 125483198 -23300274 - L1P LINE L1 -803 5343 4150 551 227 17 17 chr11 125484886 125485005 -23298467 + MER69 DNA AcHobo 29 147 -1079 248 177 51 0 chr11 125485006 125485085 -23298387 + (TA)n Simple_repeat Simple_repeat 1 83 0 1719 98 50 48 chr11 125485185 125485591 -23297881 - THE1B-int LTR MaLR -1214 366 1 2522 149 6 3 chr11 125485591 125485954 -23297518 - THE1B LTR MaLR 0 364 1 696 201 27 20 chr11 125486855 125487004 -23296468 - MER4B-int LTR ERV1 -6604 154 5 205 161 0 0 chr11 125488021 125488052 -23295420 + (CA)n Simple_repeat Simple_repeat 2 32 0 339 275 85 16 chr11 125488108 125488297 -23295175 - L1M4 LINE L1 -2685 3461 3260 2081 227 16 35 chr11 125488309 125488886 -23294586 - L1MA2 LINE L1 0 6304 5739 213 211 0 0 chr11 125489016 125489054 -23294418 + GA-rich Low_complexity Low_complexity 3 40 0 2103 121 3 13 chr11 125489616 125489931 -23293541 + AluSx SINE Alu 1 312 0 1391 272 52 20 chr11 125491205 125491646 -23291826 - MER110-int LTR ERV1 -4064 583 129 210 37 0 0 chr11 125492800 125492827 -23290645 + (TG)n Simple_repeat Simple_repeat 2 28 0 476 151 29 27 chr11 125494225 125494337 -23289135 - L1MA2 LINE L1 -406 5765 5653 471 377 43 4 chr11 125494376 125494633 -23288839 + L2 LINE L2 2990 3256 -16 1085 215 116 0 chr11 125494953 125495204 -23288268 - MLT1D LTR MaLR -3 502 223 429 148 11 68 chr11 125495209 125495297 -23288175 - AluJ/FRAM SINE Alu -7 305 223 288 338 31 12 chr11 125495490 125495650 -23287822 + L2 LINE L2 3147 3309 -4 347 243 37 66 chr11 125495772 125495908 -23287564 - L1ME4a LINE L1 -253 5868 5737 667 106 34 28 chr11 125496045 125496224 -23287248 + (TA)n Simple_repeat Simple_repeat 1 180 0 344 149 66 8 chr11 125496197 125496318 -23287154 + (CATATA)n Simple_repeat Simple_repeat 3 130 0 * 369 148 148 16 chr11 125496349 125496471 -23287001 + L1MEd LINE L1 990 1127 -4992 209 128 0 26 chr11 125496477 125496516 -23286956 + (TA)n Simple_repeat Simple_repeat 2 39 0 728 142 9 0 chr11 125496795 125496901 -23286571 + AluSg/x SINE Alu 190 296 -13 231 36 0 0 chr11 125496901 125496929 -23286543 + (TA)n Simple_repeat Simple_repeat 2 29 0 893 300 13 0 chr11 125497143 125497373 -23286099 - MIR SINE MIR -29 233 1 460 104 13 26 chr11 125497822 125497875 -23285597 - L1PA4 LINE L1 -298 5857 5804 1747 57 9 0 chr11 125497875 125498087 -23285385 + L1PA5 LINE L1 5930 6143 -11 460 104 13 26 chr11 125498087 125498110 -23285362 - L1PA4 LINE L1 -351 5804 5782 2422 145 5 15 chr11 125498335 125498762 -23284710 - L1PA4 LINE L1 -373 5778 5357 192 256 0 0 chr11 125499601 125499640 -23283832 + L2 LINE L2 3220 3258 -14 40 37 0 0 chr11 125501160 125501214 -23282258 + AT_rich Low_complexity Low_complexity 1 54 0 408 195 161 8 chr11 125501214 125501332 -23282140 - MIR SINE MIR -56 206 71 24 0 0 0 chr11 125501461 125501485 -23281987 + AT_rich Low_complexity Low_complexity 1 24 0 1956 134 7 0 chr11 125501504 125501796 -23281676 + AluSx SINE Alu 1 294 -18 180 0 0 0 chr11 125501796 125501816 -23281656 + (TA)n Simple_repeat Simple_repeat 2 21 0 180 77 0 0 chr11 125501852 125501878 -23281594 + (TA)n Simple_repeat Simple_repeat 1 26 0 752 209 31 77 chr11 125503395 125503654 -23279818 + MLT1D LTR MaLR 1 247 -258 998 306 71 6 chr11 125503833 125504330 -23279142 + L2 LINE L2 1273 1878 -1436 585 263 72 16 chr11 125504493 125504744 -23278728 - L1ME3 LINE L1 -1 6161 5897 219 69 0 0 chr11 125504775 125504804 -23278668 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2479 128 10 29 chr11 125504880 125505363 -23278109 + L1PA8A LINE L1 5526 5999 -132 530 253 47 42 chr11 125506453 125506643 -23276829 + L2 LINE L2 3123 3313 0 272 330 0 0 chr11 125508092 125508189 -23275283 - HERVR LTR ERV1 -3216 4176 4080 1501 242 97 44 chr11 125510961 125511736 -23271736 + L1ME LINE L1 2189 2954 -3261 1198 244 85 33 chr11 125511756 125512288 -23271184 + L1ME LINE L1 4864 5444 -791 234 0 0 0 chr11 125512288 125512314 -23271158 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 1198 244 85 33 chr11 125512314 125512535 -23270937 + L1ME LINE L1 5444 5652 -583 3965 177 56 7 chr11 125512745 125514393 -23269079 + L1MA4 LINE L1 4174 6007 -293 235 256 211 11 chr11 125515071 125515161 -23268311 + MIR SINE MIR 46 153 -109 347 283 167 14 chr11 125517395 125517533 -23265939 + MIR SINE MIR 48 206 -56 265 236 111 0 chr11 125517818 125517890 -23265582 - MLT1J LTR MaLR -37 474 395 530 234 39 32 chr11 125517979 125518133 -23265339 - MLT1J LTR MaLR -318 193 39 771 315 133 18 chr11 125518250 125518695 -23264777 + L2 LINE L2 2818 3313 0 486 191 13 7 chr11 125518821 125518973 -23264499 + (TA)n Simple_repeat Simple_repeat 2 154 0 434 89 0 0 chr11 125518973 125519029 -23264443 + FLAM SINE Alu 65 120 -23 234 172 72 10 chr11 125519107 125519400 -23264072 + (TA)n Simple_repeat Simple_repeat 1 311 0 2405 84 16 25 chr11 125520053 125520420 -23263052 - L1PA11 LINE L1 -10 6164 5801 30 45 0 0 chr11 125520704 125520748 -23262724 + AT_rich Low_complexity Low_complexity 1 44 0 261 229 0 29 chr11 125521144 125521214 -23262258 + MIR SINE MIR 100 167 -95 202 300 92 31 chr11 125523064 125523194 -23260278 + L2 LINE L2 2187 2324 -990 396 330 113 43 chr11 125523278 125523866 -23259606 + L2 LINE L2 2475 3115 -157 687 283 151 4 chr11 125523879 125524144 -23259328 - L2 LINE L2 0 3313 3010 274 227 30 8 chr11 125524260 125524392 -23259080 + (TTGTG)n Simple_repeat Simple_repeat 2 136 0 2224 51 18 0 chr11 125525515 125525789 -23257683 + AluY SINE Alu 1 279 -32 186 43 0 0 chr11 125525790 125525813 -23257659 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1991 231 96 40 chr11 125525976 125527095 -23256377 + L1MEc LINE L1 2085 3233 -2982 447 236 41 0 chr11 125527093 125527216 -23256256 + L1ME2 LINE L1 5743 5870 -294 * 954 69 15 0 chr11 125527276 125527407 -23256065 + L1PA3 LINE L1 6021 6153 -2 22 35 0 0 chr11 125527779 125527808 -23255664 + AT_rich Low_complexity Low_complexity 1 29 0 1162 129 5 26 chr11 125528390 125528583 -23254889 - L1PA16 LINE L1 -4 6162 5974 2097 107 1 1 chr11 125529023 125529349 -23254123 - L1PA16 LINE L1 -189 5977 5650 614 225 29 7 chr11 125529686 125529824 -23253648 + MIR SINE MIR 49 189 -73 373 183 0 0 chr11 125530992 125531063 -23252409 - L1PA16 LINE L1 -17 6149 6079 1852 113 39 7 chr11 125532095 125532378 -23251094 + AluSg SINE Alu 1 292 -18 366 343 24 0 chr11 125532793 125533041 -23250431 + L1MC/D LINE L1 4802 5055 -1091 482 279 100 16 chr11 125533490 125533741 -23249731 - MER46C DNA MER2_type -51 287 16 554 264 70 34 chr11 125533742 125534113 -23249359 + L1MC/D LINE L1 5268 5657 -725 15470 54 6 4 chr11 125534261 125536321 -23247151 - L1P LINE L1 -4060 2086 24 359 316 38 8 chr11 125537930 125538063 -23245409 + MIR SINE MIR 49 185 -77 333 312 9 9 chr11 125538220 125538329 -23245143 - MLT1J LTR MaLR -402 109 1 499 219 35 35 chr11 125538991 125539105 -23244367 - MER81 DNA DNA 0 114 1 832 189 75 35 chr11 125539395 125539596 -23243876 + MER3 DNA MER1_type 1 209 0 2214 56 40 7 chr11 125540881 125541183 -23242289 - AluYb8 SINE Alu -6 312 1 40 67 0 0 chr11 125541615 125541690 -23241782 + AT_rich Low_complexity Low_complexity 1 75 0 471 198 0 0 chr11 125541690 125541791 -23241681 - L1PA16 LINE L1 -17 6149 6049 273 45 23 0 chr11 125542057 125542101 -23241371 - MADE1 DNA Mariner 0 80 36 207 373 0 0 chr11 125542721 125542796 -23240676 - MIR3 SINE MIR -28 180 106 334 241 241 32 chr11 125543142 125543300 -23240172 - MIR SINE MIR -71 191 1 668 187 12 0 chr11 125543761 125543932 -23239540 + (TAGA)n Simple_repeat Simple_repeat 2 174 0 1874 116 20 14 chr11 125544859 125545151 -23238321 + AluSx SINE Alu 1 294 -18 272 195 23 23 chr11 125545928 125546015 -23237457 + (TAA)n Simple_repeat Simple_repeat 3 89 0 348 294 43 0 chr11 125547125 125547217 -23236255 + L2 LINE L2 3150 3245 -27 229 182 0 0 chr11 125547462 125547506 -23235966 + MLT1J2 LTR MaLR 277 320 -130 252 179 205 0 chr11 125547657 125547735 -23235737 - MIR SINE MIR -70 192 99 219 292 15 0 chr11 125548524 125548589 -23234883 - L2 LINE L2 -12 3301 3236 1389 274 160 25 chr11 125548968 125549990 -23233482 + L2 LINE L2 2153 3312 -1 547 298 74 23 chr11 125550165 125550380 -23233092 - MIR SINE MIR -14 248 23 2517 174 45 8 chr11 125551065 125551548 -23231924 - L1 LINE L1 -1965 4181 3681 1849 170 0 22 chr11 125551551 125551862 -23231610 - AluJb SINE Alu 0 312 9 343 239 15 0 chr11 125551862 125551929 -23231543 - AluS SINE Alu -234 68 1 4502 214 27 46 chr11 125551930 125552182 -23231290 - L1 LINE L1 -2443 3703 3448 1723 180 4 0 chr11 125552182 125552484 -23230988 - AluJb SINE Alu 0 308 6 4502 214 27 46 chr11 125552484 125552797 -23230675 - L1 LINE L1 -2698 3448 3131 1038 152 0 17 chr11 125552797 125552975 -23230497 - L1MA5 LINE L1 0 6300 6126 4502 214 27 46 chr11 125552975 125553680 -23229792 - L1 LINE L1 -3015 3131 2455 189 256 137 34 chr11 125554372 125554489 -23228983 + L2 LINE L2 3144 3272 0 210 211 296 0 chr11 125554928 125554999 -23228473 - MIR SINE MIR -93 169 78 2262 70 10 10 chr11 125556303 125556603 -23226869 + AluY SINE Alu 2 301 -10 1257 181 6 56 chr11 125557450 125557770 -23225702 - AluJo SINE Alu -8 304 1 368 247 113 20 chr11 125557806 125557956 -23225516 - L1ME4a LINE L1 -30 6091 5928 237 263 132 0 chr11 125558078 125558154 -23225318 - LTR67 LTR ERVL -14 543 458 230 337 0 101 chr11 125558515 125558693 -23224779 + L2 LINE L2 2930 3089 -183 24726 36 5 1 chr11 125559493 125562622 -23220850 + L1P3 LINE L1 2425 5563 -591 1438 228 165 77 chr11 125565029 125565574 -23217898 + MLT1G LTR MaLR 3 590 0 506 329 59 8 chr11 125566071 125566308 -23217164 + L3 LINE CR1 1272 1520 -57 211 211 19 0 chr11 125567399 125567451 -23216021 + (TGGA)n Simple_repeat Simple_repeat 1 53 0 977 229 9 14 chr11 125567729 125567943 -23215529 - MER20 DNA MER1_type 0 219 7 207 220 0 0 chr11 125568121 125568171 -23215301 + GA-rich Low_complexity Low_complexity 4 53 0 850 230 43 35 chr11 125618437 125618667 -23164805 + MLT1B LTR MaLR 1 232 -158 1584 214 25 17 chr11 125618668 125619028 -23164444 + MLT1A1 LTR MaLR 3 365 0 7528 204 59 44 chr11 125619028 125620738 -23162734 + MLT1A1-int LTR MaLR 1 1735 0 502 155 24 0 chr11 125620738 125620822 -23162650 + MLT1A1 LTR MaLR 1 86 -279 1332 176 26 19 chr11 125620822 125621089 -23162383 + AluJo SINE Alu 1 269 -43 1459 220 3 3 chr11 125621089 125621371 -23162101 + MLT1A1 LTR MaLR 84 365 0 1018 197 6 0 chr11 125621371 125621533 -23161939 + MLT1B LTR MaLR 228 390 0 262 341 15 30 chr11 125621697 125621829 -23161643 + MIR SINE MIR 92 221 -41 692 247 95 5 chr11 125623960 125624150 -23159322 + MIR SINE MIR 47 253 -9 349 285 8 69 chr11 125624988 125625118 -23158354 + L2 LINE L2 3189 3310 -3 381 257 63 151 chr11 125625224 125625302 -23158170 + MIR SINE MIR 4 87 -175 2077 68 23 0 chr11 125625302 125625567 -23157905 - L1PA10 LINE L1 -18 6150 5880 381 257 63 151 chr11 125625567 125625772 -23157700 + MIR SINE MIR 87 262 0 194 186 357 0 chr11 125625915 125625985 -23157487 - L2 LINE L2 -11 3302 3208 2110 122 0 0 chr11 125625996 125626292 -23157180 + AluSg SINE Alu 1 296 -14 269 291 71 50 chr11 125626751 125626892 -23156580 - MIR SINE MIR 0 262 119 392 321 36 0 chr11 125626963 125627075 -23156397 + MER91A DNA MER1_type 14 129 -67 258 213 0 0 chr11 125627139 125627186 -23156286 + MER91A DNA MER1_type 141 187 -3 198 77 0 0 chr11 125627267 125627293 -23156179 - MIR SINE MIR -64 144 119 242 281 33 0 chr11 125627497 125627585 -23155887 - MIR SINE MIR -90 118 25 976 218 201 56 chr11 125627613 125628095 -23155377 - MLT1H1 LTR MaLR -1 554 3 227 30 0 30 chr11 125628927 125628960 -23154512 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 1386 205 86 38 chr11 125631221 125631665 -23151807 + MLT1C LTR MaLR 1 465 -2 341 326 91 23 chr11 125631947 125632079 -23151393 + MIR SINE MIR 5 145 -117 209 347 95 0 chr11 125633511 125633606 -23149866 + MIR SINE MIR 45 148 -60 22 0 0 0 chr11 125633725 125633747 -23149725 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr11 125634562 125634591 -23148881 + AT_rich Low_complexity Low_complexity 1 29 0 487 349 103 51 chr11 125635717 125636479 -23146993 - L2 LINE L2 -3 3269 2459 364 318 47 47 chr11 125638412 125638604 -23144868 - MIR3 SINE MIR -13 195 4 201 152 0 0 chr11 125638629 125638662 -23144810 + (TCCA)n Simple_repeat Simple_repeat 2 34 0 434 184 131 112 chr11 125639177 125639383 -23144089 + L2 LINE L2 3088 3297 -16 686 310 52 5 chr11 125640800 125641013 -23142459 + MIR SINE MIR 20 242 -20 261 369 170 10 chr11 125641789 125641995 -23141477 + MIR SINE MIR 21 259 -3 460 250 13 59 chr11 125642024 125642176 -23141296 + MIR SINE MIR 72 216 -46 688 318 31 9 chr11 125642377 125642600 -23140872 - MIR SINE MIR -6 256 29 1188 28 28 17 chr11 125642606 125642784 -23140688 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 555 267 64 12 chr11 125642813 125642985 -23140487 - MIR SINE MIR -8 254 74 429 291 0 0 chr11 125643406 125643509 -23139963 - MIR SINE MIR -111 151 49 376 252 150 8 chr11 125644174 125644301 -23139171 + MIR3 SINE MIR 23 167 -41 274 312 32 11 chr11 125645266 125645359 -23138113 + L2 LINE L2 2978 3072 -200 686 250 113 15 chr11 125645396 125645600 -23137872 + MIR SINE MIR 7 230 -32 406 256 109 49 chr11 125647494 125647705 -23135767 + MIR SINE MIR 9 226 -36 26 0 0 0 chr11 125647765 125647791 -23135681 + AT_rich Low_complexity Low_complexity 1 26 0 238 289 34 114 chr11 125648523 125648672 -23134800 + L3b LINE CR1 1439 1575 -8 3368 25 2 2 chr11 125648722 125649116 -23134356 - L1PA4 LINE L1 0 6155 5762 668 263 136 0 chr11 125649266 125649464 -23134008 + MIR SINE MIR 5 229 -33 650 211 174 69 chr11 125649486 125649704 -23133768 + MIR SINE MIR 22 262 0 778 308 12 20 chr11 125650384 125650631 -23132841 + MIR SINE MIR 18 262 0 322 337 40 0 chr11 125650666 125650767 -23132705 - L2 LINE L2 0 3272 3168 345 233 0 14 chr11 125650853 125650926 -23132546 - L2 LINE L2 0 3313 3242 2018 213 42 0 chr11 125651009 125651167 -23132305 + MSTB LTR MaLR 1 151 -275 1678 123 82 38 chr11 125651167 125651459 -23132013 - AluSq SINE Alu -8 305 1 2018 213 42 0 chr11 125651459 125651709 -23131763 + MSTB LTR MaLR 151 426 0 835 312 74 10 chr11 125651826 125652230 -23131242 + MLT1L LTR MaLR 176 605 -10 434 298 17 44 chr11 125652248 125652429 -23131043 - MIR SINE MIR 0 262 87 255 231 19 0 chr11 125652491 125652543 -23130929 + MARNA DNA Mariner 125 177 -409 2367 39 0 7 chr11 125653548 125653844 -23129628 - AluY SINE Alu 0 321 28 296 282 77 8 chr11 125653999 125654116 -23129356 - MARNA DNA Mariner -218 368 244 2137 131 0 0 chr11 125654149 125654461 -23129011 - AluSx SINE Alu 0 312 1 180 294 29 44 chr11 125654468 125654536 -23128936 - MIR SINE MIR -65 143 77 205 333 151 11 chr11 125654631 125654724 -23128748 + MIR SINE MIR 109 214 -48 427 138 0 25 chr11 125654766 125654846 -23128626 + L1MB1 LINE L1 6090 6167 -1 637 276 67 34 chr11 125655193 125655432 -23128040 - MIR SINE MIR -10 252 6 1165 197 35 18 chr11 125656086 125656380 -23127092 + L1ME4a LINE L1 5586 5885 -236 664 341 39 29 chr11 125656389 125656700 -23126772 + L3 LINE CR1 1251 1564 -13 2049 132 3 0 chr11 125657003 125657313 -23126159 - AluSx SINE Alu -1 311 1 310 156 18 32 chr11 125657697 125658779 -23124693 + L1MD2 LINE L1 6227 7752 -19 2180 120 0 0 chr11 125658779 125659078 -23124394 - AluSx SINE Alu -13 299 1 310 156 18 32 chr11 125659078 125659098 -23124374 + L1MD2 LINE L1 7752 7771 0 459 305 0 0 chr11 125660893 125661021 -23122451 - MIR3 SINE MIR -41 167 40 756 281 88 0 chr11 125661184 125661412 -23122060 - MIR SINE MIR -3 259 12 183 267 0 0 chr11 125661424 125661469 -23122003 + L2 LINE L2 3264 3308 -5 306 351 32 0 chr11 125661851 125661945 -23121527 + L2 LINE L2 3149 3245 -27 2062 165 19 58 chr11 125662040 125662453 -23121019 - MLT2C1 LTR ERVL 0 397 1 218 321 92 30 chr11 125662713 125662844 -23120628 - MER5A DNA MER1_type -14 175 37 488 277 72 53 chr11 125662925 125663147 -23120325 + MIR SINE MIR 31 254 -8 365 300 112 29 chr11 125663632 125663802 -23119670 + MIR SINE MIR 7 190 -72 1700 96 4 0 chr11 125664034 125664263 -23119209 + AluY SINE Alu 1 230 -81 880 101 8 0 chr11 125664263 125664392 -23119080 + AluY SINE Alu 171 300 -11 322 225 27 4 chr11 125664434 125664519 -23118953 + MIR SINE MIR 60 143 -65 948 207 5 11 chr11 125664782 125664970 -23118502 - MSTD LTR MaLR 0 396 210 534 175 38 49 chr11 125665082 125665265 -23118207 - MSTD LTR MaLR -187 187 1 182 203 136 17 chr11 125665390 125665449 -23118023 - L2 LINE L2 -1888 1426 1361 416 296 138 5 chr11 125665855 125666044 -23117428 - MIR SINE MIR 0 262 49 301 333 115 6 chr11 125667056 125667212 -23116260 - MIR SINE MIR -72 190 18 229 200 0 0 chr11 125667850 125667890 -23115582 + MER45C DNA AcHobo 1 40 -913 268 198 99 12 chr11 125667899 125667980 -23115492 + MER45C DNA AcHobo 188 275 -678 405 0 0 0 chr11 125668102 125668147 -23115325 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 457 160 0 0 chr11 125668162 125668237 -23115235 + MER45C DNA AcHobo 879 953 0 422 289 59 14 chr11 125668698 125668844 -23114628 - MIR SINE MIR -62 146 36 286 292 15 73 chr11 125669140 125669277 -23114195 - L2 LINE L2 0 3272 3144 530 226 86 50 chr11 125669279 125669500 -23113972 + MER112 DNA MER1_type 3 231 -29 298 212 0 129 chr11 125669584 125669669 -23113803 - L2 LINE L2 -205 3067 2994 274 307 10 20 chr11 125669640 125669741 -23113731 - L2 LINE L2 -469 2845 2746 * 469 321 12 6 chr11 125669795 125669957 -23113515 + MLT1I LTR MaLR 57 219 -190 461 317 19 12 chr11 125670078 125670239 -23113233 - L2 LINE L2 -289 3024 2863 1953 149 41 23 chr11 125671473 125671815 -23111657 - MER7A DNA MER2_type 0 346 1 282 206 0 0 chr11 125671815 125671883 -23111589 + (TATG)n Simple_repeat Simple_repeat 1 68 0 205 264 293 9 chr11 125671998 125672104 -23111368 - L2 LINE L2 -214 3058 2923 384 230 66 66 chr11 125672355 125672507 -23110965 - MIR SINE MIR 0 262 111 869 254 10 10 chr11 125672588 125672785 -23110687 - MIR SINE MIR -3 259 63 351 0 0 0 chr11 125673998 125674037 -23109435 + (CA)n Simple_repeat Simple_repeat 2 40 0 202 304 0 0 chr11 125674128 125674184 -23109288 - L2 LINE L2 0 3313 3258 264 373 52 5 chr11 125674496 125674689 -23108783 + L2 LINE L2 2554 2755 -559 771 265 47 17 chr11 125674715 125674949 -23108523 + MIR SINE MIR 1 241 -21 231 143 0 0 chr11 125675086 125675121 -23108351 + L2 LINE L2 3266 3300 -13 192 77 0 0 chr11 125675121 125675147 -23108325 + (TGGA)n Simple_repeat Simple_repeat 1 26 0 281 263 63 32 chr11 125675875 125675970 -23107502 + MIR3 SINE MIR 107 204 -4 470 243 71 76 chr11 125677779 125677989 -23105483 - MIR SINE MIR -26 236 28 1901 166 62 0 chr11 125678011 125678367 -23105105 + L1MB4 LINE L1 5776 6153 -27 442 152 141 0 chr11 125679209 125679308 -23104164 - MER53 DNA DNA -73 116 4 671 92 0 0 chr11 125679442 125679540 -23103932 - L1PA12 LINE L1 -1 6167 6070 345 24 0 0 chr11 125679806 125679848 -23103624 + (TG)n Simple_repeat Simple_repeat 1 42 0 * 543 16 0 0 chr11 125679847 125679911 -23103561 + (GA)n Simple_repeat Simple_repeat 1 64 0 23 0 0 0 chr11 125680144 125680167 -23103305 + AT_rich Low_complexity Low_complexity 1 23 0 405 58 0 0 chr11 125680794 125680846 -23102626 + (CA)n Simple_repeat Simple_repeat 2 53 0 1660 204 156 17 chr11 125682026 125682429 -23101043 - MER31B LTR ERV1 -7 459 1 183 294 112 94 chr11 125682737 125682907 -23100565 + MIR SINE MIR 50 222 -40 1974 188 17 0 chr11 125683185 125683531 -23099941 + MLT1A1 LTR MaLR 3 354 -11 448 286 22 112 chr11 125683816 125684085 -23099387 - L2 LINE L2 -1 3271 3027 470 291 54 31 chr11 125684372 125684595 -23098877 + MIR SINE MIR 21 248 -14 233 265 0 0 chr11 125684645 125684694 -23098778 + L2 LINE L2 3251 3299 -14 616 304 80 22 chr11 125685104 125685328 -23098144 - MIR SINE MIR -6 256 20 186 231 0 0 chr11 125685846 125685885 -23097587 + L2 LINE L2 3031 3069 -244 853 269 29 25 chr11 125685899 125686144 -23097328 - MIR SINE MIR -14 248 3 201 133 0 0 chr11 125686321 125686351 -23097121 + (CCCTG)n Simple_repeat Simple_repeat 2 31 0 336 323 15 15 chr11 125686448 125686578 -23096894 + MIR SINE MIR 83 212 -50 279 247 62 101 chr11 125687051 125687229 -23096243 - L2 LINE L2 0 3272 3102 751 222 61 11 chr11 125687584 125687764 -23095708 + MER5A DNA MER1_type 1 189 0 578 259 65 60 chr11 125687943 125688279 -23095193 - L1ME LINE L1 -313 5808 5471 448 296 0 58 chr11 125688282 125688454 -23095018 - L2 LINE L2 -609 2705 2544 2137 129 49 6 chr11 125688815 125689164 -23094308 - THE1B LTR MaLR 0 364 1 373 320 0 24 chr11 125689657 125689782 -23093690 - MIR SINE MIR -109 153 32 2005 128 3 0 chr11 125689947 125690245 -23093227 - AluSx SINE Alu -13 299 1 1035 226 33 0 chr11 125690506 125690718 -23092754 - MIR SINE MIR 0 262 44 281 305 53 40 chr11 125691257 125691408 -23092064 + MIR3 SINE MIR 35 187 -21 390 318 16 8 chr11 125691416 125691545 -23091927 + MIR SINE MIR 20 149 -113 502 289 108 0 chr11 125692759 125692925 -23090547 - MIR3 SINE MIR -3 205 22 300 196 89 54 chr11 125693325 125693437 -23090035 + MLT1A1 LTR MaLR 434 549 0 1054 255 113 31 chr11 125693668 125694084 -23089388 - MLT1J2 LTR MaLR 0 450 1 352 342 78 24 chr11 125694476 125694809 -23088663 - L2 LINE L2 -528 2786 2436 2072 198 22 16 chr11 125695866 125696275 -23087197 + MLT2B1 LTR ERVL 1 406 -47 746 69 21 69 chr11 125696310 125696499 -23086973 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 319 87 22 0 chr11 125696515 125696561 -23086911 + MLT2B1 LTR ERVL 472 518 -2 1760 125 7 24 chr11 125696596 125696885 -23086587 + AluSx SINE Alu 1 284 -28 348 24 0 0 chr11 125696885 125696926 -23086546 + (CA)n Simple_repeat Simple_repeat 2 42 0 225 345 50 43 chr11 125697019 125697158 -23086314 - L2 LINE L2 -5 3308 3169 180 294 64 73 chr11 125697230 125697339 -23086133 - L2 LINE L2 -189 3083 2976 341 74 0 37 chr11 125697629 125697683 -23085789 - LTR67 LTR ERVL -27 530 479 2263 86 3 3 chr11 125697684 125697985 -23085487 + AluSp SINE Alu 1 301 -12 927 226 51 105 chr11 125699795 125700206 -23083266 - MLT1D LTR MaLR 0 505 117 393 281 25 8 chr11 125700232 125700353 -23083119 - MLT1D LTR MaLR -370 135 13 879 217 82 5 chr11 125701188 125701395 -23082077 + MER58A DNA MER1_type 2 224 0 508 259 117 25 chr11 125701455 125701694 -23081778 - MIR SINE MIR 0 262 2 243 308 92 17 chr11 125702834 125702954 -23080518 + L2 LINE L2 3139 3267 -5 290 290 26 58 chr11 125703004 125703159 -23080313 - MER117 DNA MER1_type -44 153 4 214 288 0 0 chr11 125703385 125703444 -23080028 - L3b LINE CR1 -190 1393 1335 196 256 0 0 chr11 125704603 125704646 -23078826 - MIR SINE MIR -70 192 150 27 0 0 0 chr11 125704767 125704794 -23078678 + AT_rich Low_complexity Low_complexity 1 27 0 1513 181 4 22 chr11 125704813 125705083 -23078389 - AluJo SINE Alu -30 282 18 228 214 71 36 chr11 125705855 125705939 -23077533 - L2 LINE L2 -49 3223 3137 282 313 18 25 chr11 125709092 125709255 -23074217 + GA-rich Low_complexity Low_complexity 2 163 0 * 293 381 0 20 chr11 125709187 125709334 -23074138 + G-rich Low_complexity Low_complexity 6 149 0 339 244 12 37 chr11 125709379 125709461 -23074011 - AluJb SINE Alu -106 196 117 232 266 11 75 chr11 125711770 125711958 -23071514 + GA-rich Low_complexity Low_complexity 5 180 0 463 275 66 28 chr11 125715013 125715195 -23068277 + MIR SINE MIR 48 236 -26 286 324 44 0 chr11 125718681 125718817 -23064655 - MIR SINE MIR -5 257 116 261 283 60 24 chr11 125719855 125720021 -23063451 + MIR SINE MIR 88 259 -3 319 230 66 66 chr11 125720102 125720254 -23063218 + MIR SINE MIR 111 262 0 282 206 0 0 chr11 125720726 125720794 -23062678 + (CATA)n Simple_repeat Simple_repeat 1 68 0 1966 149 41 23 chr11 125720794 125721136 -23062336 + MER7A DNA MER2_type 1 346 0 904 180 159 10 chr11 125722282 125722577 -23060895 + L1MB4 LINE L1 5798 6136 -44 452 152 141 0 chr11 125723437 125723536 -23059936 - MER53 DNA DNA -73 116 4 676 92 0 0 chr11 125723670 125723768 -23059704 - L1PA12 LINE L1 -1 6167 6070 408 20 0 0 chr11 125724035 125724084 -23059388 + (TG)n Simple_repeat Simple_repeat 1 49 0 * 510 31 0 0 chr11 125724083 125724147 -23059325 + (GA)n Simple_repeat Simple_repeat 1 64 0 369 0 0 0 chr11 125725557 125725598 -23057874 + (CA)n Simple_repeat Simple_repeat 2 42 0 203 337 74 17 chr11 125726060 125726235 -23057237 + L2 LINE L2 2557 2741 -573 391 287 149 11 chr11 125727208 125727389 -23056083 + MIR SINE MIR 47 252 -10 2195 92 0 14 chr11 125727562 125727885 -23055587 + AluSc SINE Alu 1 319 0 208 169 0 60 chr11 125729939 125730022 -23053450 + GA-rich Low_complexity Low_complexity 4 81 0 534 139 44 19 chr11 125730041 125730199 -23053273 + GA-rich Low_complexity Low_complexity 4 165 0 272 203 36 29 chr11 125730222 125730360 -23053112 + GA-rich Low_complexity Low_complexity 2 140 0 370 259 14 28 chr11 125730377 125730659 -23052813 + GA-rich Low_complexity Low_complexity 1 278 0 712 226 61 17 chr11 125734083 125734264 -23049208 - MER5A DNA MER1_type 0 189 1 229 313 12 0 chr11 125734806 125734886 -23048586 - L2 LINE L2 -34 3279 3199 516 269 95 60 chr11 125737020 125737303 -23046169 + MLT1K LTR MaLR 286 578 -10 1920 184 29 18 chr11 125737733 125738119 -23045353 + MLT1B LTR MaLR 1 390 0 934 197 17 11 chr11 125738159 125738337 -23045135 + AluJo SINE Alu 18 196 -116 226 277 38 25 chr11 125738337 125738496 -23044976 + (TGGG)n Simple_repeat Simple_repeat 2 162 0 2080 124 3 7 chr11 125740168 125740466 -23043006 - AluSq SINE Alu -12 301 5 203 208 13 104 chr11 125745133 125745210 -23038262 + L2 LINE L2 2993 3062 -210 330 283 97 14 chr11 125745323 125745468 -23038004 + MIR SINE MIR 48 204 -58 211 321 57 19 chr11 125745535 125745641 -23037831 + L2 LINE L2 3158 3267 -5 408 20 0 0 chr11 125745958 125746007 -23037465 + (CA)n Simple_repeat Simple_repeat 2 50 0 236 340 114 31 chr11 125746102 125746426 -23037046 - L2 LINE L2 -349 2965 2615 556 236 39 22 chr11 125748748 125748926 -23034546 - MIR SINE MIR -12 250 70 192 40 0 0 chr11 125754594 125754619 -23028853 + (TG)n Simple_repeat Simple_repeat 2 26 0 399 294 112 51 chr11 125756727 125756941 -23026531 - MIR SINE MIR -21 241 15 26 30 0 0 chr11 125759114 125759147 -23024325 + AT_rich Low_complexity Low_complexity 1 33 0 948 207 5 11 chr11 125760963 125761151 -23022321 - MSTD LTR MaLR 0 396 210 534 175 38 49 chr11 125761263 125761446 -23022026 - MSTD LTR MaLR -187 187 1 182 203 136 17 chr11 125761571 125761630 -23021842 - L2 LINE L2 -1888 1426 1361 314 287 160 27 chr11 125762036 125762224 -23021248 - MIR SINE MIR 0 262 50 1165 260 129 42 chr11 125764656 125765113 -23018359 - MLT1D LTR MaLR 0 505 9 299 221 33 41 chr11 125766633 125766755 -23016717 + MER113 DNA MER1_type? 1 121 -400 290 231 287 0 chr11 125769822 125769930 -23013542 + L2 LINE L2 3175 3313 0 234 91 0 0 chr11 125772707 125772740 -23010732 + (TC)n Simple_repeat Simple_repeat 2 34 0 315 0 0 0 chr11 125773133 125773168 -23010304 + (A)n Simple_repeat Simple_repeat 1 35 0 380 165 0 55 chr11 125776856 125776983 -23006489 + GA-rich Low_complexity Low_complexity 2 121 0 403 294 96 22 chr11 125777322 125777458 -23006014 + L2 LINE L2 3121 3266 -6 262 278 52 26 chr11 125778507 125778622 -23004850 + MIR SINE MIR 24 141 -67 523 142 36 36 chr11 125779929 125780188 -23003284 + GA-rich Low_complexity Low_complexity 1 259 0 491 169 28 34 chr11 125780211 125780389 -23003083 + GA-rich Low_complexity Low_complexity 1 177 0 228 144 56 33 chr11 125780401 125780491 -23002981 + GA-rich Low_complexity Low_complexity 1 92 0 418 226 24 18 chr11 125780516 125780684 -23002788 + GA-rich Low_complexity Low_complexity 3 171 0 463 312 35 65 chr11 125781564 125781763 -23001709 + MER91A DNA MER1_type 1 193 -3 451 131 0 48 chr11 125781891 125781975 -23001497 + MADE1 DNA Mariner 1 80 0 365 266 119 0 chr11 125782197 125782306 -23001166 + MIR SINE MIR 21 142 -120 277 203 27 14 chr11 125782737 125782811 -23000661 - MIR3 SINE MIR -1 207 133 300 309 12 0 chr11 125782967 125783048 -23000424 + MER5A DNA MER1_type 7 88 -101 401 287 29 23 chr11 125783480 125783745 -22999727 + GA-rich Low_complexity Low_complexity 1 266 0 972 171 25 20 chr11 125783873 125784072 -22999400 + THE1B LTR MaLR 165 364 0 448 296 0 58 chr11 125784433 125784605 -22998867 + L2 LINE L2 2544 2705 -609 584 256 62 57 chr11 125784608 125784944 -22998528 + L1ME LINE L1 5471 5808 -313 749 222 61 11 chr11 125785123 125785303 -22998169 - MER5A DNA MER1_type 0 189 1 279 247 62 101 chr11 125785656 125785834 -22997638 + L2 LINE L2 3102 3272 0 334 308 31 31 chr11 125786308 125786438 -22997034 - MIR SINE MIR -50 212 83 201 133 0 0 chr11 125786535 125786565 -22996907 + (CAGGG)n Simple_repeat Simple_repeat 2 31 0 830 274 29 25 chr11 125786742 125786987 -22996485 + MIR SINE MIR 3 248 -14 186 231 0 0 chr11 125787001 125787040 -22996432 - L2 LINE L2 -244 3069 3031 22 0 0 0 chr11 125788210 125788232 -22995240 + AT_rich Low_complexity Low_complexity 1 22 0 369 62 0 0 chr11 125788857 125788905 -22994567 + (CA)n Simple_repeat Simple_repeat 2 49 0 21 0 0 0 chr11 125792391 125792412 -22991060 + GC_rich Low_complexity Low_complexity 1 21 0 21 81 0 0 chr11 125792540 125792577 -22990895 + GC_rich Low_complexity Low_complexity 1 37 0 1660 204 156 17 chr11 125797873 125798276 -22985196 - MER31B LTR ERV1 -7 459 1 192 288 112 94 chr11 125798585 125798755 -22984717 + MIR SINE MIR 50 222 -40 1927 188 20 0 chr11 125799033 125799378 -22984094 + MLT1A1 LTR MaLR 3 354 -11 448 286 22 112 chr11 125799664 125799933 -22983539 - L2 LINE L2 -1 3271 3027 470 291 54 31 chr11 125800220 125800443 -22983029 + MIR SINE MIR 21 248 -14 233 265 0 0 chr11 125800493 125800542 -22982930 + L2 LINE L2 3251 3299 -14 562 275 99 52 chr11 125800952 125801185 -22982287 - MIR SINE MIR -6 256 13 202 282 18 49 chr11 125801537 125801700 -22981772 + CT-rich Low_complexity Low_complexity 2 159 0 855 232 54 105 chr11 125802174 125802584 -22980888 - MLT1D LTR MaLR 0 505 117 393 281 25 8 chr11 125802610 125802731 -22980741 - MLT1D LTR MaLR -370 135 13 904 213 82 5 chr11 125803565 125803772 -22979700 + MER58A DNA MER1_type 2 224 0 621 280 113 21 chr11 125803832 125804071 -22979401 - MIR SINE MIR 0 262 2 243 308 92 17 chr11 125805211 125805331 -22978141 + L2 LINE L2 3139 3267 -5 253 284 26 58 chr11 125805382 125805537 -22977935 - MER117 DNA MER1_type -44 153 4 214 288 0 0 chr11 125805763 125805822 -22977650 - L3b LINE CR1 -190 1393 1335 188 309 0 44 chr11 125806958 125807026 -22976446 - MIR SINE MIR -48 214 150 27 0 0 0 chr11 125807147 125807174 -22976298 + AT_rich Low_complexity Low_complexity 1 27 0 1270 201 11 25 chr11 125807183 125807462 -22976010 - AluJo SINE Alu -20 292 18 268 235 82 31 chr11 125808965 125809063 -22974409 - L2 LINE L2 -49 3223 3121 265 257 50 104 chr11 125809171 125809335 -22974137 - MIR3 SINE MIR -65 143 1 211 219 12 12 chr11 125810280 125810362 -22973110 + CT-rich Low_complexity Low_complexity 1 82 0 313 336 15 15 chr11 125811587 125811740 -22971732 + GA-rich Low_complexity Low_complexity 1 259 0 195 238 29 23 chr11 125811763 125811935 -22971537 + GA-rich Low_complexity Low_complexity 2 174 0 495 318 115 27 chr11 125812361 125812622 -22970850 + L3b LINE CR1 1208 1491 -92 921 76 0 38 chr11 125812972 125813103 -22970369 - AluSg/x SINE Alu -1 311 186 553 284 25 51 chr11 125813746 125813943 -22969529 + MIR SINE MIR 71 262 0 276 260 13 13 chr11 125814178 125814255 -22969217 - MER81 DNA DNA -37 77 1 255 227 0 0 chr11 125814341 125814407 -22969065 + CT-rich Low_complexity Low_complexity 4 69 0 1513 214 50 22 chr11 125814596 125814960 -22968512 - MLT1A2 LTR MaLR 0 374 1 190 228 122 73 chr11 125815422 125815545 -22967927 + L3 LINE CR1 583 711 -866 336 245 61 141 chr11 125816960 125817123 -22966349 + L2 LINE L2 3164 3313 0 304 202 0 95 chr11 125817127 125817211 -22966261 - MIR SINE MIR -98 164 89 806 235 99 74 chr11 125818425 125818490 -22964982 + MIR SINE MIR 14 76 -186 2245 67 3 0 chr11 125818490 125818773 -22964699 - AluY SINE Alu -14 297 14 806 235 99 74 chr11 125818773 125818950 -22964522 + MIR SINE MIR 76 262 0 291 299 118 16 chr11 125819077 125819204 -22964268 - MIR SINE MIR -12 250 111 342 290 126 38 chr11 125819204 125819525 -22963947 + L2 LINE L2 2696 3053 -219 269 265 126 108 chr11 125819694 125819917 -22963555 - MLT1I LTR MaLR 0 409 183 356 253 13 0 chr11 125820043 125820122 -22963350 + L2 LINE L2 3232 3311 -2 229 347 6 24 chr11 125820344 125820511 -22962961 + CT-rich Low_complexity Low_complexity 6 169 0 230 261 23 23 chr11 125820675 125820805 -22962667 + CT-rich Low_complexity Low_complexity 2 131 0 24 0 0 0 chr11 125823721 125823745 -22959727 + AT_rich Low_complexity Low_complexity 1 24 0 225 0 0 0 chr11 125825725 125825750 -22957722 + (A)n Simple_repeat Simple_repeat 1 25 0 278 354 42 7 chr11 125826253 125826397 -22957075 + MIR SINE MIR 7 155 -107 301 261 22 33 chr11 125826911 125827091 -22956381 + CT-rich Low_complexity Low_complexity 1 178 0 202 300 86 0 chr11 125832702 125832772 -22950700 + MIR SINE MIR 71 140 -68 418 257 69 132 chr11 125832864 125833152 -22950320 + L2 LINE L2 3043 3312 -1 1840 133 3 41 chr11 125833548 125833864 -22949608 - AluSx SINE Alu -8 304 1 2076 106 3 0 chr11 125836336 125836668 -22946804 + AluSp SINE Alu 1 333 0 198 167 0 0 chr11 125837275 125837311 -22946161 + (ATGGTG)n Simple_repeat Simple_repeat 4 39 0 1884 129 0 0 chr11 125839256 125839527 -22943945 + AluSx SINE Alu 12 282 -30 2338 67 0 3 chr11 125842511 125842809 -22940663 - AluY SINE Alu -14 297 1 372 297 67 95 chr11 125843250 125843354 -22940118 + L2 LINE L2 2590 2695 -577 3429 162 35 32 chr11 125843354 125843841 -22939631 + L1MB8 LINE L1 5481 5972 -206 3859 118 25 4 chr11 125843841 125844398 -22939074 + MER61E LTR ERV1 1 569 0 3429 162 35 32 chr11 125844398 125844597 -22938875 + L1MB8 LINE L1 5972 6169 -9 372 297 67 95 chr11 125844597 125845137 -22938335 + L2 LINE L2 2695 3207 -65 240 265 94 51 chr11 125845264 125845361 -22938111 + MIR SINE MIR 8 112 -150 1552 112 12 17 chr11 125845361 125845602 -22937870 + AluSg/x SINE Alu 70 309 -3 240 265 94 51 chr11 125845602 125845621 -22937851 + MIR SINE MIR 112 129 -133 263 247 59 35 chr11 125845651 125845736 -22937736 - MIR SINE MIR -62 200 114 2431 234 16 42 chr11 125846170 125846795 -22936677 - MER45B DNA AcHobo -386 654 46 1987 133 0 19 chr11 125847565 125847882 -22935590 - AluJb SINE Alu -1 311 1 2135 95 7 3 chr11 125848091 125848395 -22935077 - AluSx SINE Alu -7 305 1 384 284 88 74 chr11 125848396 125848873 -22934599 - L1ME4a LINE L1 -20 6101 5611 848 152 0 15 chr11 125848873 125849005 -22934467 + FLAM_C SINE Alu 1 130 -3 384 284 88 74 chr11 125849005 125849162 -22934310 - L1ME4a LINE L1 -510 5611 5458 367 325 58 0 chr11 125849277 125849397 -22934075 + MIR SINE MIR 117 243 -19 1696 156 7 0 chr11 125849464 125849740 -22933732 + AluSx SINE Alu 1 278 -34 207 0 0 0 chr11 125849740 125849763 -22933709 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 219 69 0 0 chr11 125849762 125849791 -22933681 + (TA)n Simple_repeat Simple_repeat 2 30 0 1312 156 6 9 chr11 125851246 125851471 -22932001 - MLT2B2 LTR ERVL 0 515 243 823 302 181 16 chr11 125851499 125852068 -22931404 - L2 LINE L2 -940 2374 1712 1767 153 53 7 chr11 125852074 125852341 -22931131 - MLT2B2 LTR ERVL 0 515 262 200 86 29 0 chr11 125852341 125852376 -22931096 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1767 153 53 7 chr11 125852376 125852550 -22930922 - MLT2B2 LTR ERVL -253 262 1 1303 211 7 30 chr11 125852672 125852975 -22930497 - AluJo SINE Alu -16 296 1 1038 97 0 21 chr11 125854206 125854351 -22929121 + AluSq/x SINE Alu 1 142 -170 245 388 48 12 chr11 125854485 125854650 -22928822 - L2 LINE L2 -168 3104 2934 278 341 6 29 chr11 125854690 125854863 -22928609 + (CA)n Simple_repeat Simple_repeat 2 170 0 2119 116 7 3 chr11 125854886 125855188 -22928284 + AluSx SINE Alu 1 303 -9 445 319 116 10 chr11 125855305 125855512 -22927960 - MIR SINE MIR -14 248 20 3336 117 18 0 chr11 125855517 125855971 -22927501 - MER1A DNA MER1_type 0 529 68 205 239 0 56 chr11 125857546 125857617 -22925855 + GA-rich Low_complexity Low_complexity 3 69 0 583 88 11 44 chr11 125858164 125858255 -22925217 - FLAM_C SINE Alu -20 123 36 325 297 62 8 chr11 125858256 125858384 -22925088 - L2 LINE L2 -8 3305 3171 627 274 42 30 chr11 125859406 125859643 -22923829 + MIR SINE MIR 23 262 0 1049 192 91 70 chr11 125859680 125859905 -22923567 + MER46C DNA MER2_type 22 256 -82 1916 142 24 0 chr11 125859905 125860193 -22923279 - AluSx SINE Alu -17 295 1 1049 192 91 70 chr11 125860193 125860253 -22923219 + MER46C DNA MER2_type 256 313 -25 1908 137 29 0 chr11 125860521 125860798 -22922674 + AluSx SINE Alu 1 285 -27 272 139 23 52 chr11 125860828 125861001 -22922471 + (TA)n Simple_repeat Simple_repeat 2 169 0 254 202 245 0 chr11 125861025 125861119 -22922353 - MIR SINE MIR -13 249 133 643 153 0 0 chr11 125861160 125861258 -22922214 - FLAM_A SINE Alu -35 107 10 474 293 58 11 chr11 125862770 125862944 -22920528 - MIR3 SINE MIR -11 197 16 1355 171 111 11 chr11 125863409 125863689 -22919783 + AluJb SINE Alu 1 308 -4 218 346 135 0 chr11 125865237 125865341 -22918131 - L2 LINE L2 -1 3271 3154 279 322 59 0 chr11 125866523 125866641 -22916831 - L2 LINE L2 -31 3241 3117 366 280 129 40 chr11 125866687 125867012 -22916460 + L2 LINE L2 1933 2286 -1028 601 253 34 82 chr11 125867022 125867092 -22916380 - MIR SINE MIR -10 252 180 2297 123 0 0 chr11 125867092 125867402 -22916070 - AluY SINE Alu -1 310 1 601 253 34 82 chr11 125867402 125867564 -22915908 - MIR SINE MIR -82 180 31 214 179 0 0 chr11 125867772 125867811 -22915661 + (AATTG)n Simple_repeat Simple_repeat 4 42 0 326 242 281 0 chr11 125868073 125868201 -22915271 + MER5A DNA MER1_type 26 189 0 289 245 19 47 chr11 125869712 125869818 -22913654 + CT-rich Low_complexity Low_complexity 2 104 0 204 147 0 0 chr11 125870808 125870842 -22912630 + MIR SINE MIR 120 153 -55 352 343 66 86 chr11 125871153 125871413 -22912059 + L3 LINE CR1 4 267 -1310 800 167 0 8 chr11 125871413 125871539 -22911933 + FLAM_A SINE Alu 4 128 -5 1535 174 16 43 chr11 125871540 125871845 -22911627 + AluJb SINE Alu 1 297 -15 352 343 66 86 chr11 125871845 125871944 -22911528 + L3 LINE CR1 266 358 -1219 303 49 0 0 chr11 125872017 125872058 -22911414 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 339 246 82 73 chr11 125872061 125872171 -22911301 + L2 LINE L2 3185 3295 -18 600 126 0 0 chr11 125872171 125872258 -22911214 + AluSg/x SINE Alu 213 299 -11 354 207 14 71 chr11 125872263 125872403 -22911069 + L1ME4a LINE L1 5990 6121 0 1038 320 91 45 chr11 125872420 125872610 -22910862 + L3 LINE CR1 351 531 -1046 2128 167 3 0 chr11 125872610 125872957 -22910515 - MER7A DNA MER2_type 0 346 1 1038 320 91 45 chr11 125872957 125873403 -22910069 + L3 LINE CR1 531 1016 -561 600 192 62 14 chr11 125873480 125873626 -22909846 - MER103 DNA DNA -6 160 8 201 167 0 0 chr11 125873631 125873667 -22909805 + T-rich Low_complexity Low_complexity 2 37 0 323 208 0 14 chr11 125873756 125873828 -22909644 + L2 LINE L2 3201 3271 -1 277 302 19 82 chr11 125874208 125874329 -22909143 + MER5B DNA MER1_type 1 111 -67 540 233 86 12 chr11 125874329 125874492 -22908980 + MER96 DNA MER1_type 1 175 0 277 302 19 82 chr11 125874492 125874529 -22908943 + MER5B DNA MER1_type 111 149 -29 284 341 39 16 chr11 125875049 125875178 -22908294 + L3 LINE CR1 1231 1362 -215 1568 136 0 21 chr11 125876244 125876480 -22906992 - AluJb SINE Alu -81 231 1 294 324 22 93 chr11 125877226 125877504 -22905968 + L2 LINE L2 2921 3178 -94 247 113 32 16 chr11 125877967 125878029 -22905443 + T-rich Low_complexity Low_complexity 5 67 0 333 221 176 37 chr11 125879231 125879367 -22904105 + L2 LINE L2 3159 3313 0 509 331 68 80 chr11 125880010 125880548 -22902924 - L2 LINE L2 -24 3248 2723 2080 107 3 28 chr11 125880605 125880894 -22902578 - AluSx SINE Alu -30 282 1 996 286 78 27 chr11 125881192 125881370 -22902102 + MLT1J2 LTR MaLR 1 168 -282 2403 106 0 0 chr11 125881370 125881673 -22901799 + AluSg SINE Alu 1 303 -7 996 286 78 27 chr11 125881673 125881906 -22901566 + MLT1J2 LTR MaLR 168 433 -17 1150 219 13 8 chr11 125881928 125882166 -22901306 + MER8 DNA MER2_type 1 239 0 1371 216 23 7 chr11 125884408 125884713 -22898759 + L1MB4 LINE L1 5870 6179 -1 533 83 12 0 chr11 125884727 125884811 -22898661 + L1MB8 LINE L1 6093 6177 -1 215 209 75 30 chr11 125884879 125884946 -22898526 - L2 LINE L2 -18 3254 3185 698 224 6 12 chr11 125885703 125885864 -22897608 - MER5B DNA MER1_type -11 167 8 332 236 75 68 chr11 125885911 125886025 -22897447 - L2 LINE L2 -1 3312 3195 2959 164 4 2 chr11 125886025 125886495 -22896977 - MER70A LTR ERVL 0 472 2 332 236 75 68 chr11 125886495 125886541 -22896931 - L2 LINE L2 -118 3195 3151 208 232 0 58 chr11 125887256 125887325 -22896147 - L2 LINE L2 -90 3223 3159 234 0 0 0 chr11 125887327 125887353 -22896119 + (TA)n Simple_repeat Simple_repeat 2 27 0 281 321 0 0 chr11 125887382 125887466 -22896006 - L2 LINE L2 -238 3075 2992 378 0 0 0 chr11 125888346 125888388 -22895084 + (A)n Simple_repeat Simple_repeat 1 42 0 531 297 54 14 chr11 125889523 125889745 -22893727 + MIR SINE MIR 28 258 -4 224 176 0 59 chr11 125890792 125890843 -22892629 + L2 LINE L2 3265 3312 -1 187 324 15 0 chr11 125895438 125895506 -22887966 - MIR SINE MIR -62 146 78 186 43 0 0 chr11 125899794 125899817 -22883655 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 261 172 0 94 chr11 125899833 125899897 -22883575 + L2 LINE L2 3256 3313 0 261 0 0 0 chr11 125900803 125900832 -22882640 + (GA)n Simple_repeat Simple_repeat 2 30 0 306 246 25 33 chr11 125903066 125903188 -22880284 - MER113 DNA MER1_type? -400 121 1 1101 242 71 69 chr11 125904701 125905164 -22878308 + MLT1C LTR MaLR 4 467 0 367 287 44 0 chr11 125907124 125907260 -22876212 - MIR SINE MIR -5 257 116 2201 106 3 0 chr11 125908540 125908869 -22874603 + AluSp SINE Alu 1 330 0 198 167 0 0 chr11 125909476 125909512 -22873960 + (ATGGTG)n Simple_repeat Simple_repeat 4 39 0 2250 104 0 0 chr11 125911457 125911754 -22871718 + AluSx SINE Alu 12 308 -4 200 345 72 22 chr11 125911770 125911909 -22871563 + L3b LINE CR1 1190 1335 -248 219 114 0 0 chr11 125915658 125915693 -22867779 + (TG)n Simple_repeat Simple_repeat 1 35 0 204 125 0 0 chr11 125915694 125915726 -22867746 + (TA)n Simple_repeat Simple_repeat 2 33 0 598 242 39 22 chr11 125918314 125918492 -22864980 + MIR SINE MIR 70 250 -12 384 265 120 55 chr11 125921313 125921513 -22861959 - MIR SINE MIR -35 227 15 26 30 0 0 chr11 125923686 125923719 -22859753 + AT_rich Low_complexity Low_complexity 1 33 0 2285 78 3 0 chr11 125926749 125927031 -22856441 - AluY SINE Alu -24 287 5 454 297 114 57 chr11 125927496 125927742 -22855730 - MIR SINE MIR 0 262 3 194 299 58 11 chr11 125929027 125929114 -22854358 + MIR SINE MIR 123 213 -49 1349 157 13 18 chr11 125929816 125930045 -22853427 + MER30 DNA MER1_type 1 228 -2 237 234 0 78 chr11 125930551 125930628 -22852844 + L2 LINE L2 2992 3062 -210 462 245 82 14 chr11 125930741 125930888 -22852584 + MIR SINE MIR 48 204 -58 310 302 57 19 chr11 125930955 125931061 -22852411 + L2 LINE L2 3158 3267 -5 444 19 0 0 chr11 125931378 125931431 -22852041 + (CA)n Simple_repeat Simple_repeat 2 54 0 336 335 109 41 chr11 125931510 125931850 -22851622 - L2 LINE L2 -337 2977 2615 401 274 206 0 chr11 125932207 125932353 -22851119 + MER5A DNA MER1_type 14 189 0 25 51 0 0 chr11 125933988 125934027 -22849445 + AT_rich Low_complexity Low_complexity 1 39 0 726 217 78 12 chr11 125934652 125934818 -22848654 - MER5A DNA MER1_type -6 183 7 233 257 139 20 chr11 125934807 125934908 -22848564 - MIR SINE MIR -44 218 106 * 259 224 17 0 chr11 125934904 125934962 -22848510 + MIR SINE MIR 63 121 -141 2094 140 0 0 chr11 125935830 125936122 -22847350 - AluSx SINE Alu -20 292 1 2144 141 0 0 chr11 125936127 125936433 -22847039 - AluSx SINE Alu -6 306 1 1875 132 20 26 chr11 125936753 125937057 -22846415 - AluJo SINE Alu -10 302 1 2418 74 0 7 chr11 125937488 125937797 -22845675 - AluY SINE Alu 0 311 5 2292 74 7 3 chr11 125938612 125938897 -22844575 - AluSg SINE Alu -15 295 10 240 200 0 0 chr11 125939515 125939570 -22843902 + (TGAA)n Simple_repeat Simple_repeat 1 55 0 694 204 0 19 chr11 125939636 125939798 -22843674 - L1MD3 LINE L1 -8 7987 7829 1542 172 38 187 chr11 125939799 125940060 -22843412 - L1MC4a LINE L1 -312 7496 7198 425 220 0 68 chr11 125940060 125940192 -22843280 - MLT1F1 LTR MaLR -442 125 3 1542 172 38 187 chr11 125940192 125940533 -22842939 - L1MC4a LINE L1 -610 7198 6872 455 309 134 14 chr11 125941426 125941643 -22841829 + MIR SINE MIR 19 261 -1 286 294 12 0 chr11 125942103 125942188 -22841284 + L2 LINE L2 3194 3279 -34 674 242 55 16 chr11 125942730 125942912 -22840560 + MER5A DNA MER1_type 1 189 0 195 42 0 0 chr11 125944502 125944526 -22838946 + (T)n Simple_repeat Simple_repeat 1 24 0 2267 71 0 0 chr11 125948091 125948411 -22835061 - AluY SINE Alu 0 320 1 1620 30 0 15 chr11 125949545 125949745 -22833727 + L1PA2 LINE L1 5959 6155 0 209 318 65 19 chr11 125952019 125952173 -22831299 + L2 LINE L2 2897 3057 -215 310 225 117 33 chr11 125954995 125955115 -22828357 + MIR SINE MIR 133 262 0 200 325 121 35 chr11 125955489 125955803 -22827669 - L2 LINE L2 -608 2706 2366 21 36 0 0 chr11 125956567 125956595 -22826877 + AT_rich Low_complexity Low_complexity 1 28 0 550 269 66 28 chr11 125958962 125959144 -22824328 - MIR SINE MIR -26 236 48 212 387 7 47 chr11 125960345 125960495 -22822977 - L2 LINE L2 -10 3303 3160 220 284 45 0 chr11 125960680 125960747 -22822725 + L2 LINE L2 3145 3214 -58 252 0 0 0 chr11 125960915 125960943 -22822529 + (TC)n Simple_repeat Simple_repeat 2 29 0 * 375 23 0 0 chr11 125960942 125960986 -22822486 + (TG)n Simple_repeat Simple_repeat 1 44 0 804 240 40 5 chr11 125962139 125962339 -22821133 - MIR SINE MIR -1 261 55 216 248 212 7 chr11 125962425 125962562 -22820910 - MIR SINE MIR -17 245 81 226 226 191 12 chr11 125962738 125962822 -22820650 + MIR SINE MIR 99 197 -65 35 41 0 0 chr11 125962952 125963001 -22820471 + AT_rich Low_complexity Low_complexity 1 49 0 1076 249 67 67 chr11 125964617 125965079 -22818393 - L2 LINE L2 -4 3309 2848 2335 102 0 0 chr11 125965911 125966214 -22817258 + AluSx SINE Alu 2 304 -8 719 164 49 60 chr11 125966287 125966411 -22817061 + MER3 DNA MER1_type 4 127 -82 2608 61 0 0 chr11 125966411 125966722 -22816750 - AluY SINE Alu 0 311 1 719 164 49 60 chr11 125966722 125966780 -22816692 + MER3 DNA MER1_type 127 184 -25 243 294 87 54 chr11 125969465 125969649 -22813823 - MIR SINE MIR -65 197 8 2357 60 0 7 chr11 125969977 125970276 -22813196 + AluY SINE Alu 1 297 -14 21 0 0 0 chr11 125970522 125970543 -22812929 + AT_rich Low_complexity Low_complexity 1 21 0 2238 94 3 13 chr11 125971581 125971890 -22811582 + AluSq SINE Alu 1 306 -7 547 81 23 0 chr11 125972334 125972420 -22811052 + (TA)n Simple_repeat Simple_repeat 1 88 0 1881 154 19 26 chr11 125972767 125973078 -22810394 - AluJo SINE Alu -3 309 1 2485 161 3 9 chr11 125973135 125973586 -22809886 + MSTB2 LTR MaLR 1 457 0 261 319 51 9 chr11 125974964 125975078 -22808394 + MIR SINE MIR 44 160 -69 397 286 39 100 chr11 125978457 125978688 -22804784 + MIR SINE MIR 3 219 -43 1340 107 0 0 chr11 125978933 125979130 -22804342 + L1PA13 LINE L1 5947 6143 -20 302 272 22 0 chr11 125979149 125979241 -22804231 + MER69 DNA AcHobo 706 799 -1727 643 188 69 6 chr11 125979295 125979455 -22804017 + MER69 DNA AcHobo 2266 2435 -91 357 39 0 0 chr11 125982696 125982748 -22800724 + AluY SINE Alu 250 301 0 294 29 0 0 chr11 125982900 125982935 -22800537 + (CA)n Simple_repeat Simple_repeat 1 35 0 2288 127 15 0 chr11 125982936 125983276 -22800196 + MER7A DNA MER2_type 3 345 -1 21 36 0 0 chr11 125984265 125984293 -22799179 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr11 125984336 125984363 -22799109 + AT_rich Low_complexity Low_complexity 1 27 0 228 317 0 0 chr11 125984574 125984634 -22798838 - MARNA DNA Mariner -89 497 438 315 0 0 0 chr11 125984969 125985004 -22798468 + (TG)n Simple_repeat Simple_repeat 2 36 0 471 172 0 39 chr11 125985539 125985667 -22797805 + CT-rich Low_complexity Low_complexity 3 125 0 187 81 81 0 chr11 125985676 125985713 -22797759 - L2 LINE L2 0 3313 3274 517 277 44 25 chr11 125986499 125986658 -22796814 + MIR SINE MIR 25 186 -76 244 292 142 35 chr11 125986655 125986768 -22796704 - L2 LINE L2 -21 3251 3127 * 22 35 0 0 chr11 125988051 125988080 -22795392 + AT_rich Low_complexity Low_complexity 1 29 0 521 242 17 45 chr11 125988133 125988198 -22795274 - MIR SINE MIR -4 258 193 1184 214 4 17 chr11 125988198 125988436 -22795036 + MER8 DNA MER2_type 2 236 -3 521 242 17 45 chr11 125988436 125988548 -22794924 - MIR SINE MIR -69 193 86 262 267 78 43 chr11 125988862 125988978 -22794494 - L2 LINE L2 -76 3196 3077 356 260 97 80 chr11 125990412 125990774 -22792698 + MLT1J1 LTR MaLR 7 374 -76 189 426 0 0 chr11 125991440 125991501 -22791971 - L2 LINE L2 -44 3228 3168 311 0 0 25 chr11 125994803 125994843 -22788629 + (CA)n Simple_repeat Simple_repeat 2 40 0 202 335 92 55 chr11 125995469 125995633 -22787839 - L2 LINE L2 -706 2608 2439 588 233 51 40 chr11 125995742 125995918 -22787554 - MIR SINE MIR 0 262 85 398 228 106 8 chr11 125995918 125996041 -22787431 + MLT1J LTR MaLR 1 135 -376 383 286 71 66 chr11 125996103 125996285 -22787187 + MLT1J LTR MaLR 235 417 -94 239 292 56 42 chr11 125996429 125996501 -22786971 - MIR SINE MIR -173 89 17 1785 126 25 22 chr11 125996901 125997179 -22786293 - AluJo SINE Alu -23 289 11 250 305 12 37 chr11 125999068 125999150 -22784322 - L2 LINE L2 0 3313 3234 3788 167 24 45 chr11 125999220 126000072 -22783400 - L1MB7 LINE L1 -8 6176 5343 236 236 0 83 chr11 126003819 126003891 -22779581 - MIR SINE MIR 0 262 197 271 328 26 17 chr11 126004042 126004158 -22779314 - MIR3 SINE MIR -91 117 1 531 251 237 14 chr11 126004474 126004681 -22778791 + MIR SINE MIR 2 254 -8 228 182 0 0 chr11 126005282 126005326 -22778146 - L2 LINE L2 -1 3312 3269 230 224 59 0 chr11 126005467 126005552 -22777920 + L1MC4 LINE L1 6614 6703 -1339 30 45 0 0 chr11 126005829 126005873 -22777599 + AT_rich Low_complexity Low_complexity 1 44 0 4062 157 93 7 chr11 126006246 126007006 -22776466 - LTR1B LTR ERV1 0 826 1 312 276 16 110 chr11 126007398 126007525 -22775947 - L2 LINE L2 -24 3289 3175 22 0 0 0 chr11 126008269 126008291 -22775181 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr11 126008425 126008446 -22775026 + AT_rich Low_complexity Low_complexity 1 21 0 206 382 33 28 chr11 126009102 126009314 -22774158 - L2 LINE L2 -2428 886 674 287 319 102 37 chr11 126009900 126010116 -22773356 + L2 LINE L2 2526 2755 -559 1689 151 45 42 chr11 126011200 126011537 -22771935 + MER44D DNA MER2_type 1 608 -1 3936 151 58 16 chr11 126011988 126012828 -22770644 - Charlie1a DNA MER1_type -2 1453 511 1762 187 115 10 chr11 126012832 126013223 -22770249 - Charlie1a DNA MER1_type -1017 438 7 521 268 42 67 chr11 126013721 126013960 -22769512 - MIR SINE MIR -2 260 28 204 125 0 0 chr11 126014929 126014961 -22768511 + (GGA)n Simple_repeat Simple_repeat 3 34 0 828 280 5 19 chr11 126014979 126015190 -22768282 - MIR SINE MIR -1 261 54 183 100 0 0 chr11 126015687 126015717 -22767755 + (T)n Simple_repeat Simple_repeat 1 30 0 2768 10 0 0 chr11 126015721 126016035 -22767437 - L1HS LINE L1 0 6155 5842 2363 8 0 0 chr11 126016035 126016299 -22767173 + L1HS LINE L1 5572 5835 -320 297 0 0 0 chr11 126017453 126017486 -22765986 + (TA)n Simple_repeat Simple_repeat 2 34 0 2063 108 27 7 chr11 126017486 126017781 -22765691 - AluSx SINE Alu -11 301 1 342 300 0 0 chr11 126019771 126019861 -22763611 + L1ME LINE L1 5625 5714 -407 491 343 136 5 chr11 126019894 126020107 -22763365 - MIR SINE MIR -3 259 19 * 921 271 24 0 chr11 126020106 126020316 -22763156 - MIR SINE MIR -11 251 37 355 296 48 24 chr11 126020575 126020700 -22762772 + MIR SINE MIR 18 145 -63 351 256 6 106 chr11 126021336 126021496 -22761976 - MER117 DNA MER1_type -50 147 4 748 158 0 22 chr11 126023215 126023354 -22760118 - FLAM_C SINE Alu -1 142 7 2263 109 3 0 chr11 126026785 126027097 -22756375 - AluSp SINE Alu 0 313 1 251 254 0 0 chr11 126027212 126027267 -22756205 + GA-rich Low_complexity Low_complexity 4 58 0 183 80 0 0 chr11 126027325 126027350 -22756122 + (T)n Simple_repeat Simple_repeat 1 25 0 21 36 0 0 chr11 126027463 126027491 -22755981 + AT_rich Low_complexity Low_complexity 1 28 0 463 230 126 58 chr11 126029519 126029693 -22753779 - MIR SINE MIR -33 229 44 1004 102 3 19 chr11 126029693 126029866 -22753606 - L1P4 LINE L1 -360 5814 5653 793 195 89 0 chr11 126030104 126030273 -22753199 + MER3 DNA MER1_type 1 184 -25 445 305 123 10 chr11 126031018 126031221 -22752251 - MIR SINE MIR -6 256 31 2852 134 2 21 chr11 126031974 126032458 -22751014 + L1PA13 LINE L1 5684 6158 -5 279 0 0 0 chr11 126032534 126032565 -22750907 + (CA)n Simple_repeat Simple_repeat 2 32 0 2414 91 0 3 chr11 126032648 126032957 -22750515 - AluSg SINE Alu -2 308 1 217 100 40 0 chr11 126033050 126033100 -22750372 + (TTATA)n Simple_repeat Simple_repeat 5 56 0 293 288 38 0 chr11 126033271 126033351 -22750121 + L2 LINE L2 3231 3313 0 613 300 72 13 chr11 126034320 126034557 -22748915 + MIR SINE MIR 8 258 -4 285 318 82 9 chr11 126034650 126034760 -22748712 - L2 LINE L2 -19 3253 3136 632 279 9 70 chr11 126034823 126035099 -22748373 - L1ME1 LINE L1 -5 6161 5908 2153 97 80 45 chr11 126035099 126035451 -22748021 - THE1B LTR MaLR 0 364 1 632 279 9 70 chr11 126035451 126035515 -22747957 - L1ME1 LINE L1 -258 5908 5842 23 0 0 0 chr11 126036134 126036157 -22747315 + AT_rich Low_complexity Low_complexity 1 23 0 271 128 0 0 chr11 126036454 126036493 -22746979 - L2 LINE L2 -11 3302 3264 226 284 42 32 chr11 126036807 126036902 -22746570 + L2 LINE L2 1109 1204 -2110 1534 178 58 0 chr11 126038560 126038717 -22744755 - AluJo SINE Alu -19 293 112 270 0 0 0 chr11 126038717 126038747 -22744725 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1534 178 58 0 chr11 126038747 126038864 -22744608 - AluJo SINE Alu -200 112 3 1913 135 22 63 chr11 126040606 126040969 -22742503 + MER7A DNA MER2_type 1 346 0 180 140 60 60 chr11 126041403 126041453 -22742019 - L3 LINE CR1 -601 976 927 21 71 0 0 chr11 126042373 126042415 -22741057 + AT_rich Low_complexity Low_complexity 1 42 0 879 178 6 6 chr11 126043893 126044056 -22739416 + FAM SINE Alu 1 163 -12 439 168 134 45 chr11 126044312 126044491 -22738981 - L1ME4a LINE L1 0 6121 5927 261 0 0 0 chr11 126044936 126044965 -22738507 + (T)n Simple_repeat Simple_repeat 1 29 0 914 192 88 5 chr11 126045591 126045784 -22737688 + MER3 DNA MER1_type 1 209 0 254 0 0 77 chr11 126045841 126045880 -22737592 + (A)n Simple_repeat Simple_repeat 1 36 0 1278 195 22 88 chr11 126047154 126047554 -22735918 + MLT1A2 LTR MaLR 1 374 0 324 211 26 13 chr11 126047720 126047796 -22735676 + L1MEc LINE L1 17 93 -6303 1772 224 65 41 chr11 126047829 126048464 -22735008 + L1MEc LINE L1 1660 2309 -4087 1376 80 16 21 chr11 126048464 126048652 -22734820 - AluY SINE Alu -12 299 113 296 260 21 0 chr11 126048652 126048748 -22734724 + L1MEc LINE L1 2323 2420 -3976 2064 139 3 0 chr11 126050128 126050437 -22733035 + AluSx SINE Alu 1 310 -2 370 183 12 37 chr11 126050551 126050633 -22732839 + MER5B DNA MER1_type 1 80 -98 2562 235 97 73 chr11 126050742 126052074 -22731398 + L1MC5 LINE L1 6548 7911 -50 580 223 73 77 chr11 126052105 126052338 -22731134 + L1ME3A LINE L1 5933 6164 -6 180 0 0 0 chr11 126052573 126052593 -22730879 + (TAA)n Simple_repeat Simple_repeat 1 20 0 28 0 0 0 chr11 126052801 126052829 -22730643 + AT_rich Low_complexity Low_complexity 1 28 0 612 281 118 9 chr11 126052906 126053134 -22730338 + MIR SINE MIR 9 261 -1 1805 175 43 0 chr11 126055392 126055718 -22727754 + MER58B DNA MER1_type 2 341 0 279 295 108 47 chr11 126057519 126057648 -22725824 + L3 LINE CR1 1424 1560 -17 1972 113 24 7 chr11 126057844 126058137 -22725335 + AluSg SINE Alu 1 298 -12 679 309 44 10 chr11 126058313 126058517 -22724955 + MIR SINE MIR 20 230 -32 2136 96 3 3 chr11 126058678 126058969 -22724503 - AluSx SINE Alu -20 292 2 2891 109 5 30 chr11 126063210 126063649 -22719823 - MSTC LTR MaLR 0 428 1 3181 240 78 98 chr11 126064100 126065918 -22717554 + L1MC4 LINE L1 6100 7713 -95 570 202 8 0 chr11 126065986 126066115 -22717357 + L1MC4 LINE L1 7913 8042 0 508 296 59 30 chr11 126066233 126066605 -22716867 + L1ME4a LINE L1 5668 6050 -71 26 50 0 0 chr11 126066607 126066647 -22716825 + AT_rich Low_complexity Low_complexity 1 40 0 217 146 0 36 chr11 126067201 126067256 -22716216 + (GGGA)n Simple_repeat Simple_repeat 1 53 0 204 188 12 62 chr11 126067273 126067353 -22716119 + GA-rich Low_complexity Low_complexity 2 77 0 273 325 0 0 chr11 126068330 126068410 -22715062 + GA-rich Low_complexity Low_complexity 2 81 0 733 272 106 42 chr11 126068868 126069151 -22714321 + L2 LINE L2 3013 3313 0 350 270 35 77 chr11 126069575 126069719 -22713753 + L1ME4a LINE L1 5617 5745 -376 863 159 5 79 chr11 126069719 126069908 -22713564 + FAM SINE Alu 1 175 0 350 270 35 77 chr11 126069908 126070048 -22713424 + L1ME4a LINE L1 5745 5889 -232 227 246 70 42 chr11 126070083 126070225 -22713247 + L1ME4a LINE L1 5975 6120 -1 580 246 8 8 chr11 126071923 126072057 -22711415 + MER5B DNA MER1_type 11 144 -34 22 0 0 0 chr11 126073339 126073361 -22710111 + AT_rich Low_complexity Low_complexity 1 22 0 297 295 90 16 chr11 126074329 126074451 -22709021 + MIR3 SINE MIR 15 145 -63 330 339 120 5 chr11 126075835 126076027 -22707445 - MIR SINE MIR -29 233 20 409 311 66 15 chr11 126077102 126077375 -22706097 + L1MC1 LINE L1 4730 5016 -1130 703 110 21 14 chr11 126077387 126077532 -22705940 + (TA)n Simple_repeat Simple_repeat 2 147 0 5713 137 25 13 chr11 126077553 126078152 -22705320 + L1MC1 LINE L1 5375 5992 -341 2194 103 0 3 chr11 126078152 126078453 -22705019 + AluSg SINE Alu 1 300 -10 5713 137 25 13 chr11 126078453 126078795 -22704677 + L1MC1 LINE L1 5992 6328 -5 2095 118 0 0 chr11 126079070 126079378 -22704094 + AluSg SINE Alu 3 310 0 845 265 79 14 chr11 126079389 126079668 -22703804 + L1MC4a LINE L1 5284 5580 -2228 236 246 31 0 chr11 126079705 126079770 -22703702 + L1 LINE L1 4862 4928 -1218 * 249 206 73 15 chr11 126079762 126079830 -22703642 + L1MC4a LINE L1 7040 7111 -697 2215 214 49 25 chr11 126079844 126080400 -22703072 + L1MC4a LINE L1 7223 7791 -17 2231 118 0 6 chr11 126080408 126080722 -22702750 - AluSx SINE Alu 0 312 1 294 232 133 70 chr11 126080830 126080869 -22702603 + L1ME3A LINE L1 4919 4954 -1192 2216 125 0 0 chr11 126080869 126081172 -22702300 + AluSx SINE Alu 1 303 -9 378 0 0 0 chr11 126081172 126081214 -22702258 + (TA)n Simple_repeat Simple_repeat 2 43 0 294 232 133 70 chr11 126081214 126081518 -22701954 + L1ME3A LINE L1 4953 5285 -861 824 188 100 0 chr11 126081537 126081697 -22701775 + AluJb SINE Alu 137 312 0 227 204 0 0 chr11 126081816 126081865 -22701607 - Alu SINE Alu -168 134 86 1098 189 42 9 chr11 126081865 126082077 -22701395 - AluJo SINE Alu -92 220 2 494 249 80 76 chr11 126082269 126082570 -22700902 + L1ME3A LINE L1 5625 5926 -236 267 148 39 70 chr11 126083332 126083460 -22700012 + (TATAA)n Simple_repeat Simple_repeat 4 127 0 2332 91 0 10 chr11 126083490 126083798 -22699674 + AluSq SINE Alu 1 305 -8 1449 158 106 38 chr11 126084437 126084729 -22698743 + AluJb SINE Alu 1 312 0 203 119 24 24 chr11 126086223 126086265 -22697207 + T-rich Low_complexity Low_complexity 4 45 0 523 118 0 0 chr11 126088480 126088565 -22694907 - AluSp/q SINE Alu -1 312 228 21 36 0 0 chr11 126088996 126089024 -22694448 + AT_rich Low_complexity Low_complexity 1 28 0 1528 158 27 48 chr11 126089032 126089324 -22694148 - AluJo SINE Alu -26 286 1 843 244 51 43 chr11 126090241 126090467 -22693005 - MIR SINE MIR 0 262 32 2312 110 0 0 chr11 126090467 126090768 -22692704 - AluSg SINE Alu -9 301 1 843 244 51 43 chr11 126090768 126090795 -22692677 - MIR SINE MIR -230 32 7 28 0 0 0 chr11 126091329 126091357 -22692115 + AT_rich Low_complexity Low_complexity 1 28 0 400 332 61 24 chr11 126091872 126092119 -22691353 + MIR SINE MIR 7 262 0 1944 132 48 0 chr11 126092383 126092678 -22690794 + AluSx SINE Alu 4 312 0 333 0 0 0 chr11 126093524 126093561 -22689911 + (CA)n Simple_repeat Simple_repeat 2 38 0 2482 179 116 2 chr11 126094183 126094676 -22688796 - MER44D DNA MER2_type -1 604 1 21 0 0 0 chr11 126095367 126095388 -22688084 + AT_rich Low_complexity Low_complexity 1 21 0 251 252 114 41 chr11 126096846 126096969 -22686503 + MER5B DNA MER1_type 7 138 -40 2077 125 6 10 chr11 126101340 126101652 -22681820 - AluSx SINE Alu -1 311 1 515 286 31 33 chr11 126103930 126104267 -22679205 + L1ME2 LINE L1 5578 5850 -314 203 43 65 22 chr11 126104332 126104378 -22679094 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 2144 120 7 0 chr11 126104553 126104861 -22678611 + AluY SINE Alu 1 310 -1 288 77 0 0 chr11 126105595 126105634 -22677838 + (TG)n Simple_repeat Simple_repeat 1 39 0 1600 129 83 18 chr11 126106152 126106430 -22677042 + AluSq SINE Alu 1 296 -17 189 225 36 162 chr11 126106550 126106661 -22676811 + L3 LINE CR1 931 1027 -550 * 211 296 56 14 chr11 126106660 126106731 -22676741 + L2 LINE L2 3204 3277 -36 499 281 166 54 chr11 126108094 126108642 -22674830 + L2 LINE L2 2469 3078 -194 204 120 40 20 chr11 126108728 126108778 -22674694 + (TA)n Simple_repeat Simple_repeat 2 52 0 2157 102 0 7 chr11 126108786 126109071 -22674401 - AluSc SINE Alu -26 283 1 228 253 81 40 chr11 126109275 126109374 -22674098 + L2 LINE L2 3202 3304 -9 566 326 47 5 chr11 126111292 126111507 -22671965 + MIR SINE MIR 38 261 -1 186 0 40 0 chr11 126111667 126111692 -22671780 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2219 122 0 0 chr11 126111692 126111987 -22671485 - AluSx SINE Alu -17 295 1 1268 173 105 48 chr11 126112115 126112277 -22671195 + MER58B DNA MER1_type 3 154 -2266 2234 110 7 0 chr11 126112277 126112577 -22670895 + AluSx SINE Alu 1 302 -10 1268 173 105 48 chr11 126112577 126112727 -22670745 + MER58B DNA MER1_type 154 333 -8 404 333 48 48 chr11 126117090 126117276 -22666196 + L2 LINE L2 3085 3270 -2 1332 216 0 4 chr11 126117604 126117858 -22665614 - AluJb SINE Alu -11 301 49 228 353 52 43 chr11 126118745 126118861 -22664611 - L2 LINE L2 -11 3261 3145 235 275 107 74 chr11 126119002 126119151 -22664321 + L3 LINE CR1 1279 1432 -145 221 184 0 0 chr11 126119166 126119204 -22664268 + L3 LINE CR1 1535 1572 -5 192 304 96 26 chr11 126120241 126120356 -22663116 + MIR SINE MIR 20 142 -66 265 352 11 0 chr11 126120520 126120608 -22662864 - L2 LINE L2 -2 3270 3182 491 258 173 16 chr11 126122068 126122297 -22661175 + MIR SINE MIR 2 252 -10 1817 167 10 3 chr11 126122388 126122681 -22660791 + AluJb SINE Alu 1 295 -17 311 333 135 0 chr11 126122852 126122948 -22660524 - L2 LINE L2 -21 3251 3143 630 275 37 49 chr11 126122949 126123193 -22660279 - MIR SINE MIR 0 262 22 262 208 0 0 chr11 126123381 126123429 -22660043 - MIR SINE MIR -129 133 86 345 291 31 58 chr11 126124043 126124236 -22659236 + MIR SINE MIR 5 192 -63 1196 221 77 63 chr11 126124252 126124921 -22658551 + LTR41 LTR ERVL 1 766 -7 21 36 0 0 chr11 126125348 126125376 -22658096 + AT_rich Low_complexity Low_complexity 1 28 0 200 33 0 33 chr11 126126809 126126839 -22656633 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 23 33 0 0 chr11 126129806 126129836 -22653636 + AT_rich Low_complexity Low_complexity 1 30 0 1574 185 38 42 chr11 126129921 126130234 -22653238 + AluJb SINE Alu 1 312 0 1836 129 0 0 chr11 126130332 126130588 -22652884 - AluSx SINE Alu -19 293 38 183 114 0 0 chr11 126130876 126130911 -22652561 + (A)n Simple_repeat Simple_repeat 1 35 0 445 280 87 16 chr11 126133419 126133602 -22649870 + MIR SINE MIR 1 203 -59 219 264 28 56 chr11 126133692 126133764 -22649708 + L2 LINE L2 2896 2965 -307 260 276 58 58 chr11 126133764 126133851 -22649621 + L2 LINE L2 3142 3228 -44 645 272 108 17 chr11 126133864 126134096 -22649376 - MIR SINE MIR -4 258 6 225 0 0 0 chr11 126134944 126134969 -22648503 + (TC)n Simple_repeat Simple_repeat 2 26 0 571 230 87 41 chr11 126135123 126135319 -22648153 + MIR SINE MIR 54 258 -4 360 0 0 0 chr11 126135320 126135360 -22648112 + (TTA)n Simple_repeat Simple_repeat 1 40 0 244 143 36 0 chr11 126136338 126136394 -22647078 + GA-rich Low_complexity Low_complexity 2 59 0 22 0 0 0 chr11 126136658 126136680 -22646792 + AT_rich Low_complexity Low_complexity 1 22 0 290 274 0 14 chr11 126137873 126137946 -22645526 - L2 LINE L2 0 3272 3201 22 35 0 0 chr11 126137966 126137995 -22645477 + AT_rich Low_complexity Low_complexity 1 29 0 537 339 63 0 chr11 126142329 126142550 -22640922 - MIR SINE MIR -1 261 27 2569 110 3 6 chr11 126145575 126145940 -22637532 - THE1B LTR MaLR 0 364 1 953 236 17 43 chr11 126146077 126146310 -22637162 - MIR SINE MIR 0 262 36 2324 89 0 3 chr11 126146493 126146796 -22636676 - AluSx SINE Alu -10 302 1 190 125 62 0 chr11 126147460 126147492 -22635980 - L2 LINE L2 -6 3266 3233 376 229 56 49 chr11 126147555 126147699 -22635773 - MIR SINE MIR 0 262 118 782 194 88 0 chr11 126148370 126148530 -22634942 - MER5A DNA MER1_type 0 189 16 325 323 0 71 chr11 126149858 126150000 -22633472 + MIR SINE MIR 23 155 -107 1830 161 0 0 chr11 126150000 126150292 -22633180 + AluJo SINE Alu 1 292 -20 325 323 0 71 chr11 126150292 126150304 -22633168 + MIR SINE MIR 155 166 -96 1823 209 71 31 chr11 126150304 126150837 -22632635 + L1ME1 LINE L1 4775 5285 -881 2375 82 13 0 chr11 126150837 126151142 -22632330 + AluY SINE Alu 1 309 -2 1823 209 71 31 chr11 126151142 126151227 -22632245 + L1ME1 LINE L1 5285 5365 -801 3819 37 0 0 chr11 126151227 126151682 -22631790 + L1PA5 LINE L1 5698 6152 -2 1823 209 71 31 chr11 126151682 126151853 -22631619 + L1ME1 LINE L1 5365 5592 -574 1065 163 40 0 chr11 126151860 126152062 -22631410 + MER2 DNA MER2_type 2 211 -134 23 0 0 0 chr11 126152084 126152107 -22631365 + AT_rich Low_complexity Low_complexity 1 23 0 352 216 40 0 chr11 126152135 126152209 -22631263 + MER2 DNA MER2_type 269 345 0 1649 216 36 64 chr11 126152210 126152769 -22630703 + L1ME1 LINE L1 5606 6148 -18 21 57 0 0 chr11 126153058 126153093 -22630379 + AT_rich Low_complexity Low_complexity 1 35 0 246 32 0 0 chr11 126153227 126153258 -22630214 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 194 128 26 0 chr11 126153889 126153928 -22629544 + (ATAGG)n Simple_repeat Simple_repeat 4 43 0 198 162 27 0 chr11 126154436 126154473 -22628999 - L3 LINE CR1 -1260 317 280 891 245 64 37 chr11 126155397 126155833 -22627639 - L1ME4a LINE L1 -3 6118 5671 482 250 169 25 chr11 126157181 126157341 -22626131 + MIR3 SINE MIR 16 198 -10 520 334 173 37 chr11 126157739 126159252 -22624220 + L2 LINE L2 1540 3243 -29 192 97 0 0 chr11 126159254 126159285 -22624187 + (CA)n Simple_repeat Simple_repeat 2 32 0 27 0 0 0 chr11 126159625 126159652 -22623820 + AT_rich Low_complexity Low_complexity 1 27 0 978 197 56 0 chr11 126160556 126160754 -22622718 - MER3 DNA MER1_type 0 209 1 2644 52 0 0 chr11 126161489 126161797 -22621675 + AluY SINE Alu 1 308 -3 256 304 0 38 chr11 126162141 126162220 -22621252 + L2 LINE L2 3236 3311 -2 2197 135 39 36 chr11 126162258 126162621 -22620851 + THE1B LTR MaLR 1 364 0 449 317 131 35 chr11 126162621 126163019 -22620453 + L2 LINE L2 2214 2649 -665 1825 151 25 0 chr11 126163162 126163468 -22620004 - AluJo SINE Alu 0 313 1 241 306 112 59 chr11 126163561 126163731 -22619741 + L2 LINE L2 2918 3096 -176 334 371 52 33 chr11 126166563 126166776 -22616696 - L2 LINE L2 -161 3111 2895 293 382 42 14 chr11 126166813 126167025 -22616447 - L2 LINE L2 -481 2833 2616 209 329 24 82 chr11 126167089 126167216 -22616256 - L2 LINE L2 -824 2490 2374 2343 86 3 3 chr11 126167216 126167519 -22615953 - AluSg SINE Alu -7 303 1 209 329 24 82 chr11 126167519 126167561 -22615911 - L2 LINE L2 -940 2374 2331 327 211 95 11 chr11 126167702 126167797 -22615675 + MIR SINE MIR 90 192 -70 192 278 72 72 chr11 126167839 126167936 -22615536 - L2 LINE L2 -969 2345 2249 2277 99 0 3 chr11 126168161 126168465 -22615007 + AluY SINE Alu 1 303 -8 3460 64 14 0 chr11 126168562 126168982 -22614490 + L1PA6 LINE L1 5725 6150 -4 2171 242 118 130 chr11 126169125 126169725 -22613747 + L1MC4 LINE L1 5941 6547 -1495 278 177 194 0 chr11 126169725 126169787 -22613685 - Tigger2 DNA MER2_type -10 2708 2635 2171 242 118 130 chr11 126169787 126171125 -22612347 + L1MC4 LINE L1 6547 8041 -1 182 243 0 27 chr11 126171170 126171207 -22612265 + L2 LINE L2 3214 3249 -23 26 0 0 0 chr11 126172655 126172681 -22610791 + AT_rich Low_complexity Low_complexity 1 26 0 180 365 58 34 chr11 126173655 126173863 -22609609 - L2 LINE L2 -831 2483 2271 459 248 87 29 chr11 126175691 126175897 -22607575 + L1MC5 LINE L1 7707 7924 -37 412 328 39 25 chr11 126176465 126176669 -22606803 + MIR3 SINE MIR 2 208 0 186 167 0 0 chr11 126176792 126176828 -22606644 + (TA)n Simple_repeat Simple_repeat 2 37 0 243 0 0 0 chr11 126179193 126179220 -22604252 + (T)n Simple_repeat Simple_repeat 1 27 0 32 0 0 0 chr11 126180420 126180452 -22603020 + GC_rich Low_complexity Low_complexity 1 32 0 195 42 0 0 chr11 126181200 126181224 -22602248 + (CCG)n Simple_repeat Simple_repeat 3 26 0 2230 115 0 0 chr11 126183115 126183410 -22600062 + AluSq SINE Alu 1 295 -18 282 296 44 22 chr11 126183542 126183677 -22599795 - MIR SINE MIR -41 221 84 1464 185 56 74 chr11 126185013 126185391 -22598081 + MLT1A2 LTR MaLR 4 374 0 202 322 76 35 chr11 126186219 126186390 -22597082 - L2 LINE L2 -289 2983 2806 1919 120 10 52 chr11 126186445 126186753 -22596719 + AluSx SINE Alu 3 297 -15 1788 214 58 58 chr11 126191803 126192307 -22591165 + MLT1D LTR MaLR 2 505 0 263 240 339 8 chr11 126192310 126192431 -22591041 - MIR SINE MIR -7 255 95 1566 205 0 13 chr11 126194075 126194377 -22589095 - AluJo SINE Alu -14 298 1 501 268 87 52 chr11 126194449 126194680 -22588792 - MIR SINE MIR -1 261 23 418 182 0 0 chr11 126195233 126195299 -22588173 - MER5A DNA MER1_type 0 189 124 537 151 0 21 chr11 126195299 126195392 -22588080 + MER21B LTR ERV1 329 419 -444 618 203 7 68 chr11 126195395 126195543 -22587929 - MER5A DNA MER1_type -50 139 1 283 242 11 21 chr11 126195619 126195714 -22587758 + (TA)n Simple_repeat Simple_repeat 1 94 0 562 286 33 25 chr11 126195782 126196027 -22587445 + MIR SINE MIR 2 248 -14 215 274 178 15 chr11 126195987 126196122 -22587350 - MIR SINE MIR -50 212 56 * 213 319 14 14 chr11 126197234 126197303 -22586169 - L2 LINE L2 -2 3270 3202 348 323 142 0 chr11 126197349 126197504 -22585968 + MER5B DNA MER1_type 1 177 -1 2011 155 0 7 chr11 126197749 126198046 -22585426 - AluSx SINE Alu -17 295 1 203 171 0 0 chr11 126198551 126198586 -22584886 + A-rich Low_complexity Low_complexity 2 36 0 1668 154 0 42 chr11 126199660 126199946 -22583526 + AluJb SINE Alu 1 274 -38 476 193 9 0 chr11 126199949 126200058 -22583414 + GA-rich Low_complexity Low_complexity 1 110 0 24 91 0 0 chr11 126200094 126200160 -22583312 + AT_rich Low_complexity Low_complexity 1 66 0 453 197 9 174 chr11 126201448 126201666 -22581806 - MIR3 SINE MIR -2 206 25 26 0 0 0 chr11 126201752 126201778 -22581694 + AT_rich Low_complexity Low_complexity 1 26 0 210 314 51 29 chr11 126203104 126203241 -22580231 - L3 LINE CR1 -292 1285 1146 360 0 0 0 chr11 126203241 126203281 -22580191 + (T)n Simple_repeat Simple_repeat 1 40 0 1474 203 4 4 chr11 126203496 126203757 -22579715 - AluJb SINE Alu -51 261 1 306 282 147 18 chr11 126205698 126205861 -22577611 - L2 LINE L2 -3 3310 3127 180 0 0 0 chr11 126206284 126206304 -22577168 + (TA)n Simple_repeat Simple_repeat 2 21 0 196 143 0 29 chr11 126206310 126206345 -22577127 - MIR SINE MIR -66 196 163 870 235 20 5 chr11 126206563 126206625 -22576847 - MIR SINE MIR -37 225 165 2056 136 3 3 chr11 126206625 126206927 -22576545 + AluSx SINE Alu 1 302 -10 870 235 20 5 chr11 126206927 126207064 -22576408 - MIR SINE MIR -97 165 23 267 322 82 33 chr11 126207283 126207466 -22576006 - L2 LINE L2 -397 2917 2726 346 192 0 3 chr11 126207489 126207557 -22575915 + AluS SINE Alu 2 57 -246 8147 26 0 1 chr11 126207668 126208840 -22574632 + L1PA3 LINE L1 4981 6151 -4 3430 253 81 39 chr11 126208850 126209666 -22573806 - L1MEd LINE L1 -2228 3987 3207 1070 47 78 0 chr11 126209666 126209794 -22573678 + MER85 DNA T2_type 1 138 -1 3430 253 81 39 chr11 126209794 126210687 -22572785 - L1MEd LINE L1 -3008 3207 2205 25 31 0 0 chr11 126210826 126210858 -22572614 + AT_rich Low_complexity Low_complexity 1 32 0 411 288 54 29 chr11 126210858 126211010 -22572462 - L1MEd LINE L1 -4334 2062 1915 180 111 0 0 chr11 126211010 126211037 -22572435 + (TA)n Simple_repeat Simple_repeat 2 28 0 2239 105 0 0 chr11 126211037 126211323 -22572149 - AluSg SINE Alu -24 286 1 411 288 54 29 chr11 126211323 126211984 -22571488 - L1MEd LINE L1 -4480 1916 1159 263 130 19 0 chr11 126212026 126212080 -22571392 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 799 280 79 91 chr11 126212080 126212874 -22570598 + L1ME2 LINE L1 278 1062 -5334 * 2867 209 141 36 chr11 126212853 126214043 -22569429 + L1ME2 LINE L1 4879 6223 -10 399 292 52 34 chr11 126214479 126214712 -22568760 - L1MEd LINE L1 -6124 272 36 1924 133 29 26 chr11 126214892 126215201 -22568271 - AluSg SINE Alu 0 310 1 253 249 69 61 chr11 126215208 126215453 -22568019 - L1MEd LINE L1 -4905 1214 968 22 56 0 0 chr11 126215466 126215502 -22567970 + AT_rich Low_complexity Low_complexity 1 36 0 265 135 0 0 chr11 126216261 126216298 -22567174 + tRNA-Val-GTG tRNA tRNA 2 38 -38 225 167 0 0 chr11 126217481 126217517 -22565955 + MLT1L LTR MaLR 577 612 -3 859 226 86 5 chr11 126217542 126217763 -22565709 + MIR SINE MIR 2 240 -22 398 325 35 54 chr11 126218345 126218662 -22564810 + ERVL LTR ERVL 826 1136 -4628 686 315 52 24 chr11 126219181 126219511 -22563961 - MLT1I LTR MaLR 0 409 71 1333 309 85 58 chr11 126219633 126220528 -22562944 + ERVL LTR ERVL 1771 2689 -3075 2063 254 55 36 chr11 126220759 126221373 -22562099 + MLT1E2 LTR MaLR 1 626 0 773 320 54 12 chr11 126221672 126222081 -22561391 + ERVL LTR ERVL 4389 4814 -950 628 254 216 0 chr11 126222178 126222391 -22561081 - MIR SINE MIR -1 261 3 363 318 0 0 chr11 126222401 126222511 -22560961 + ERVL LTR ERVL 4872 4981 -673 492 344 13 43 chr11 126222647 126222877 -22560595 + ERVL LTR ERVL 5195 5417 -347 285 197 0 0 chr11 126223093 126223154 -22560318 + CT-rich Low_complexity Low_complexity 4 64 0 1677 183 3 10 chr11 126224256 126224562 -22558910 + AluJo SINE Alu 1 304 -8 7128 43 1 5 chr11 126225642 126226497 -22556975 - L1PA5 LINE L1 -9 6145 5294 404 360 20 0 chr11 126227027 126227177 -22556295 - MER117 DNA MER1_type -33 164 12 989 67 7 30 chr11 126228095 126228230 -22555242 + AluY SINE Alu 1 132 -179 2342 64 0 3 chr11 126228239 126228546 -22554926 + AluY SINE Alu 1 306 0 584 228 161 10 chr11 126228590 126228780 -22554692 + L2 LINE L2 2549 2767 -547 861 193 23 18 chr11 126228780 126228951 -22554521 - MER5A DNA MER1_type -1 188 17 740 250 122 62 chr11 126228970 126229490 -22553982 + L2 LINE L2 2766 3313 0 6691 223 50 43 chr11 126229741 126230764 -22552708 - L1MD2 LINE L1 -4 6749 5734 2201 118 0 3 chr11 126230764 126231069 -22552403 - AluSx SINE Alu -8 304 1 6691 223 50 43 chr11 126231069 126233237 -22550235 - L1MD2 LINE L1 -1019 5734 3529 387 123 0 0 chr11 126233237 126233302 -22550170 - L1MB4 LINE L1 -2 6178 6114 1645 164 31 0 chr11 126234900 126235186 -22548286 - L1MB3 LINE L1 -56 6127 5833 4707 225 70 35 chr11 126235230 126235843 -22547629 - L1MD2 LINE L1 -3359 3181 2591 2412 57 10 3 chr11 126235843 126236139 -22547333 - AluY SINE Alu -13 298 1 4707 225 70 35 chr11 126236139 126236326 -22547146 - L1MD2 LINE L1 -3949 2591 2412 2302 103 0 13 chr11 126236326 126236638 -22546834 - AluSc SINE Alu -1 308 1 4707 225 70 35 chr11 126236638 126236791 -22546681 - L1MD2 LINE L1 -4128 2412 2266 1577 166 0 12 chr11 126236791 126237050 -22546422 - AluSx SINE Alu -19 293 38 4707 225 70 35 chr11 126237050 126238436 -22545036 - L1MD2 LINE L1 -4274 2266 791 966 251 41 41 chr11 126238848 126239167 -22544305 - L1MD2 LINE L1 -6195 345 27 728 273 88 24 chr11 126239186 126239483 -22543989 - L1M4 LINE L1 -1115 5031 4716 399 284 47 56 chr11 126239700 126239788 -22543684 - L1M4 LINE L1 -2008 4138 4051 1666 190 3 7 chr11 126239788 126240088 -22543384 + AluJb SINE Alu 1 299 -13 399 284 47 56 chr11 126240088 126240214 -22543258 - L1M4 LINE L1 -2095 4051 3926 2239 118 0 3 chr11 126240250 126240564 -22542908 + AluSq SINE Alu 1 313 0 7860 231 62 46 chr11 126240564 126243266 -22540206 + L1M4 LINE L1 2290 5034 -1112 1020 295 50 42 chr11 126244038 126244174 -22539298 - L1MEc LINE L1 -4613 1783 1650 2157 107 0 0 chr11 126244174 126244476 -22538996 + AluY SINE Alu 4 305 0 1020 295 50 42 chr11 126244476 126244680 -22538792 - L1MEc LINE L1 -4746 1650 1449 2099 147 0 0 chr11 126244680 126244973 -22538499 + AluSq SINE Alu 1 293 -20 1020 295 50 42 chr11 126244973 126245387 -22538085 - L1MEc LINE L1 -4947 1449 1021 392 254 15 46 chr11 126245857 126245987 -22537485 + MER117 DNA MER1_type 35 160 -37 351 203 0 14 chr11 126247606 126247680 -22535792 + L1ME4a LINE L1 5970 6042 -79 777 145 0 23 chr11 126247857 126247988 -22535484 - AluSx SINE Alu -3 309 182 1262 130 5 50 chr11 126248088 126248288 -22535184 - AluSx SINE Alu -121 191 1 255 374 47 21 chr11 126248455 126248645 -22534827 - L3 LINE CR1 -12 1565 1371 1310 149 5 14 chr11 126248646 126248868 -22534604 - AluJo SINE Alu -5 307 88 337 321 145 5 chr11 126248876 126249069 -22534403 - L3 LINE CR1 -196 1381 1162 232 349 50 35 chr11 126249079 126249277 -22534195 - L2 LINE L2 -258 3014 2814 654 356 122 12 chr11 126249900 126250319 -22533153 - MER115 DNA AcHobo -228 465 1 271 310 208 19 chr11 126250342 126250558 -22532914 + MIR SINE MIR 6 262 0 1056 277 85 27 chr11 126251604 126251635 -22531837 - L2 LINE L2 -5 3308 3280 2034 131 70 25 chr11 126251635 126251994 -22531478 + THE1C LTR MaLR 1 375 0 1056 277 85 27 chr11 126251994 126252486 -22530986 - L2 LINE L2 -33 3280 2762 195 343 59 29 chr11 126252474 126252576 -22530896 - L2 LINE L2 -48 3265 3161 * 1857 156 17 0 chr11 126253502 126253803 -22529669 - AluJo SINE Alu -3 309 4 269 239 162 43 chr11 126253820 126253937 -22529535 + MIR SINE MIR 16 146 -62 316 316 121 62 chr11 126254359 126254631 -22528841 + L2 LINE L2 2944 3231 -41 193 379 106 8 chr11 126254671 126254803 -22528669 - MIR SINE MIR -34 228 84 477 298 30 25 chr11 126255780 126255978 -22527494 + L2 LINE L2 2874 3072 -241 2947 179 72 59 chr11 126256317 126256999 -22526473 + LTR8 LTR ERV1 1 691 0 445 191 71 160 chr11 126257060 126257285 -22526187 + MIR SINE MIR 58 262 0 245 241 69 58 chr11 126259414 126259501 -22523971 - MIR SINE MIR -62 146 59 275 246 39 77 chr11 126260207 126260337 -22523135 + MLT1I LTR MaLR 277 401 -8 344 259 133 14 chr11 126260341 126260456 -22523016 + MIR3 SINE MIR 34 163 -45 501 278 38 79 chr11 126260459 126260725 -22522747 - MIR SINE MIR 0 262 8 190 314 181 19 chr11 126261073 126261178 -22522294 - L2 LINE L2 -1 3271 3150 1219 185 5 9 chr11 126261292 126261503 -22521969 + MER63A DNA MER1_type 1 210 0 285 318 120 52 chr11 126261530 126261763 -22521709 + L3b LINE CR1 1300 1548 -35 210 192 39 0 chr11 126263001 126263053 -22520419 + (TCCA)n Simple_repeat Simple_repeat 3 56 0 217 338 0 0 chr11 126263061 126263132 -22520340 - L2 LINE L2 0 3313 3243 720 308 21 17 chr11 126263143 126263377 -22520095 + MIR SINE MIR 12 246 -16 2070 258 62 14 chr11 126263579 126264161 -22519311 + MLT2F LTR ERVL 1 610 -53 258 256 11 44 chr11 126264191 126264281 -22519191 + L1MC4 LINE L1 6617 6703 -1339 2819 142 31 18 chr11 126265014 126265466 -22518006 - LTR32 LTR ERVL 0 471 14 309 331 60 43 chr11 126265471 126265773 -22517699 + L2 LINE L2 2551 2857 -457 316 335 32 26 chr11 126267406 126267561 -22515911 + L2 LINE L2 2196 2351 -963 299 300 164 59 chr11 126267566 126268253 -22515219 + L2 LINE L2 2470 3228 -44 509 293 155 6 chr11 126268592 126268766 -22514706 + MIR SINE MIR 63 262 0 1044 207 5 19 chr11 126268829 126269042 -22514430 - MER20 DNA MER1_type 0 219 10 670 68 0 19 chr11 126270201 126270304 -22513168 + (TTTC)n Simple_repeat Simple_repeat 4 104 0 2243 61 0 0 chr11 126270304 126270581 -22512891 - AluY SINE Alu -34 277 1 1597 200 3 0 chr11 126270628 126270923 -22512549 + AluJb SINE Alu 1 296 -16 228 333 0 0 chr11 126271219 126271285 -22512187 + MIR SINE MIR 87 152 -110 183 42 0 0 chr11 126272028 126272052 -22511420 + (TTTC)n Simple_repeat Simple_repeat 1 24 0 365 141 13 64 chr11 126273212 126273290 -22510182 + MIR SINE MIR 189 262 0 275 278 157 9 chr11 126274775 126274883 -22508589 + MIR3 SINE MIR 69 192 -16 297 0 0 0 chr11 126275442 126275475 -22507997 + (CA)n Simple_repeat Simple_repeat 2 34 0 348 255 9 28 chr11 126275491 126275597 -22507875 - MIR SINE MIR -43 219 116 1583 225 206 6 chr11 126276466 126276947 -22506525 - MLT1F1 LTR MaLR 0 567 4 240 282 92 53 chr11 126276958 126277089 -22506383 + MIR SINE MIR 113 248 -14 244 311 58 69 chr11 126278175 126278435 -22505037 + L2 LINE L2 2384 2640 -674 249 250 0 0 chr11 126278449 126278509 -22504963 + (CA)n Simple_repeat Simple_repeat 1 60 0 303 252 0 0 chr11 126278531 126278674 -22504798 + (CA)n Simple_repeat Simple_repeat 1 143 0 449 345 123 36 chr11 126278877 126279234 -22504238 + L2 LINE L2 2885 3272 0 241 298 65 48 chr11 126279237 126279361 -22504111 + MIR SINE MIR 25 150 -112 211 350 29 10 chr11 126279430 126279533 -22503939 - L2 LINE L2 -830 2484 2380 363 200 5 87 chr11 126279719 126279838 -22503634 + L1MC4 LINE L1 2004 6983 -1339 * 375 284 23 0 chr11 126279752 126279840 -22503632 - L1MC4 LINE L1 -1339 6703 6614 330 352 44 6 chr11 126280826 126280985 -22502487 - MIR3 SINE MIR -12 196 32 1695 202 67 82 chr11 126282723 126283281 -22500191 - MLT1E1 LTR MaLR -1 653 78 1846 214 51 9 chr11 126284826 126285275 -22498197 + L1MC3 LINE L1 7293 7760 -25 372 22 0 0 chr11 126285314 126285359 -22498113 + (TAA)n Simple_repeat Simple_repeat 2 46 0 1788 152 30 7 chr11 126285361 126285663 -22497809 + AluJo SINE Alu 2 310 -2 403 355 0 19 chr11 126285770 126285925 -22497547 - MIR SINE MIR -96 166 15 481 285 29 15 chr11 126286593 126286730 -22496742 + MIR3 SINE MIR 60 198 -10 323 279 45 45 chr11 126288436 126288547 -22494925 + MIR3 SINE MIR 70 180 -28 1880 119 0 77 chr11 126289608 126289944 -22493528 - AluJb SINE Alu -2 310 1 199 370 61 12 chr11 126290114 126290279 -22493193 - L2 LINE L2 -181 3091 2919 332 334 2 21 chr11 126290528 126290702 -22492770 + MER5A DNA MER1_type 4 186 -3 223 244 12 93 chr11 126291281 126291367 -22492105 - MIR SINE MIR -108 154 76 500 285 142 70 chr11 126291843 126292330 -22491142 + MLT1K LTR MaLR 67 588 0 1883 131 3 39 chr11 126292379 126292554 -22490918 - AluSx SINE Alu -11 301 140 2147 120 0 3 chr11 126292554 126292863 -22490609 - AluSg SINE Alu -2 308 1 1883 131 3 39 chr11 126292863 126292999 -22490473 - AluSx SINE Alu -172 140 1 515 321 56 22 chr11 126293900 126294286 -22489186 + L2 LINE L2 2638 3034 -238 212 329 0 26 chr11 126294439 126294515 -22488957 + MER5A DNA MER1_type 23 96 -93 5642 105 33 18 chr11 126295750 126296637 -22486835 + L1PB3 LINE L1 5254 6153 -1 200 316 122 41 chr11 126297142 126297240 -22486232 - L2 LINE L2 0 3313 3208 313 323 154 24 chr11 126297355 126297668 -22485804 - L2 LINE L2 -159 3113 2763 1308 316 102 50 chr11 126299323 126300470 -22483002 - L2 LINE L2 -199 3073 1871 276 338 0 0 chr11 126300475 126300555 -22482917 + MIR SINE MIR 183 262 0 273 353 70 19 chr11 126300585 126300741 -22482731 + L3b LINE CR1 1294 1457 -126 276 275 191 8 chr11 126301844 126301975 -22481497 + MIR SINE MIR 97 251 -11 662 229 120 71 chr11 126302003 126302353 -22481119 - MLT1K LTR MaLR -22 566 200 192 286 43 0 chr11 126303093 126303163 -22480309 + L2 LINE L2 3221 3293 -20 1981 101 7 4 chr11 126307730 126308033 -22475439 - AluSg SINE Alu 0 304 1 906 177 29 126 chr11 126309158 126309468 -22474004 + AluYb8 SINE Alu 1 280 -38 216 67 0 0 chr11 126309475 126309505 -22473967 + (TAA)n Simple_repeat Simple_repeat 2 31 0 710 179 128 77 chr11 126309922 126310118 -22473354 + MIR SINE MIR 23 228 -34 2216 107 0 0 chr11 126310410 126310709 -22472763 - AluSc SINE Alu -10 299 1 287 278 33 22 chr11 126311573 126311663 -22471809 + L2 LINE L2 2290 2380 -934 460 333 25 21 chr11 126311666 126311909 -22471563 + L2 LINE L2 2639 2882 -432 215 281 18 0 chr11 126311909 126311966 -22471506 - MER91A DNA MER1_type 0 190 133 435 253 20 62 chr11 126311976 126312122 -22471350 - MER91A DNA MER1_type -36 160 21 * 683 303 10 113 chr11 126312053 126312555 -22470917 + L2 LINE L2 2813 3262 -10 220 282 12 71 chr11 126314263 126314348 -22469124 + MIR3 SINE MIR 97 176 -32 377 304 103 18 chr11 126314765 126314989 -22468483 - L2 LINE L2 -2124 1190 948 256 324 171 0 chr11 126315209 126315320 -22468152 - L2 LINE L2 -1 3312 3183 852 306 95 41 chr11 126315779 126316272 -22467200 + L3 LINE CR1 983 1502 -75 2431 62 3 0 chr11 126317480 126317784 -22465688 + AluY SINE Alu 1 305 -6 945 118 42 0 chr11 126317788 126317932 -22465540 + L1PB1 LINE L1 6002 6151 0 328 234 139 66 chr11 126318265 126318402 -22465070 + MIR SINE MIR 2 148 -114 371 248 97 26 chr11 126318402 126318515 -22464957 + MER94 DNA DNA 13 133 -1 305 254 15 0 chr11 126318522 126318589 -22464883 + MIR SINE MIR 168 235 -27 2211 114 0 0 chr11 126318613 126318920 -22464552 + AluSx SINE Alu 5 311 -1 977 211 5 16 chr11 126323363 126323548 -22459924 - MER5A DNA MER1_type -5 184 2 476 326 88 4 chr11 126324316 126324543 -22458929 + MIR SINE MIR 5 250 -12 584 286 71 18 chr11 126325527 126325751 -22457721 + MIR SINE MIR 9 244 -18 1266 234 115 54 chr11 126326436 126327046 -22456426 + L1ME4a LINE L1 5474 6120 -1 504 250 27 92 chr11 126328133 126328210 -22455262 + MIR3 SINE MIR 24 104 -104 1557 181 0 29 chr11 126328210 126328351 -22455121 + AluJo SINE Alu 1 145 -167 1994 109 10 39 chr11 126328351 126328662 -22454810 + AluSp SINE Alu 1 302 -11 1557 181 0 29 chr11 126328662 126328834 -22454638 + AluJo SINE Alu 145 305 -7 504 250 27 92 chr11 126328834 126328940 -22454532 + MIR3 SINE MIR 104 195 -13 251 307 36 4 chr11 126329541 126329683 -22453789 + MIR SINE MIR 6 153 -62 2341 70 3 10 chr11 126329809 126330122 -22453350 + AluY SINE Alu 1 311 0 2000 171 40 13 chr11 126331110 126331490 -22451982 + MLT1B LTR MaLR 1 390 0 307 258 73 32 chr11 126332171 126332295 -22451177 - MIR SINE MIR -14 248 120 981 165 0 0 chr11 126332299 126332469 -22451003 + FRAM SINE Alu 5 174 -2 288 224 66 0 chr11 126332469 126332545 -22450927 - MIR SINE MIR -74 134 54 181 81 27 27 chr11 126332688 126332701 -22450771 + (GA)n Simple_repeat Simple_repeat 2 14 -24 1755 151 17 10 chr11 126332701 126333000 -22450472 + AluJb SINE Alu 1 301 -11 181 81 27 27 chr11 126333000 126333023 -22450449 + (GA)n Simple_repeat Simple_repeat 13 38 0 389 229 0 0 chr11 126333261 126333344 -22450128 + MER94 DNA DNA 1 83 -51 286 378 0 0 chr11 126333381 126333463 -22450009 + L2 LINE L2 3172 3253 -19 288 375 80 39 chr11 126333508 126333948 -22449524 + L2 LINE L2 2811 3268 -4 524 246 60 104 chr11 126334657 126334925 -22448547 + MIR SINE MIR 7 262 0 908 244 33 33 chr11 126335257 126335499 -22447973 - MIR SINE MIR 0 262 21 232 309 0 0 chr11 126335575 126335630 -22447842 + (CATG)n Simple_repeat Simple_repeat 4 58 0 197 363 140 12 chr11 126337328 126337499 -22445973 - L3b LINE CR1 -24 1559 1367 * 230 299 23 23 chr11 126337497 126337584 -22445888 - MIR3 SINE MIR -6 202 116 839 191 0 6 chr11 126338236 126338414 -22445058 + CT-rich Low_complexity Low_complexity 3 179 0 355 328 55 27 chr11 126339020 126339203 -22444269 - MIR3 SINE MIR 0 208 21 555 245 129 0 chr11 126339358 126339513 -22443959 + MIR SINE MIR 84 258 -4 180 152 0 0 chr11 126339513 126339546 -22443926 + (TGG)n Simple_repeat Simple_repeat 2 34 0 221 380 19 28 chr11 126339875 126339983 -22443489 + L3b LINE CR1 1475 1581 -2 927 170 58 19 chr11 126340028 126340371 -22443101 - MSTB1 LTR MaLR 0 432 1 1398 199 80 22 chr11 126340692 126341141 -22442331 + L1ME1 LINE L1 4958 5429 -743 753 158 0 0 chr11 126341145 126341259 -22442213 + AluJb SINE Alu 5 118 -194 3209 190 42 30 chr11 126341281 126342017 -22441455 + L1ME1 LINE L1 5414 6158 -8 568 262 10 79 chr11 126342037 126342239 -22441233 - MIR SINE MIR -74 188 1 259 352 22 0 chr11 126342659 126342750 -22440722 + MIR SINE MIR 59 151 -111 768 313 102 15 chr11 126342998 126343330 -22440142 + L3 LINE CR1 1180 1540 -37 232 27 54 0 chr11 126344214 126344251 -22439221 + (TG)n Simple_repeat Simple_repeat 1 39 0 272 271 14 0 chr11 126345067 126345137 -22438335 - L2 LINE L2 -2 3270 3200 385 376 25 6 chr11 126345300 126345462 -22438010 + MIR SINE MIR 34 198 -64 213 351 0 0 chr11 126346165 126346242 -22437230 - MIR3 SINE MIR -1 207 131 241 288 76 59 chr11 126346296 126346414 -22437058 + MIR SINE MIR 87 206 -56 354 332 68 32 chr11 126346427 126346617 -22436855 + MIR SINE MIR 1 197 -65 237 269 50 50 chr11 126346670 126346789 -22436683 - MIR SINE MIR -74 134 15 234 0 0 0 chr11 126347798 126347824 -22435648 + (T)n Simple_repeat Simple_repeat 1 26 0 202 228 18 18 chr11 126348693 126348750 -22434722 + GA-rich Low_complexity Low_complexity 2 58 0 308 345 55 9 chr11 126350427 126350537 -22432935 - MIR SINE MIR -128 134 20 521 304 42 71 chr11 126350564 126350804 -22432668 + MIR SINE MIR 20 252 -10 2443 263 47 41 chr11 126350874 126352101 -22431371 - L1ME3A LINE L1 -50 6120 4753 1116 163 93 0 chr11 126352101 126352316 -22431156 + MER46A DNA MER2_type 2 236 0 2443 263 47 41 chr11 126352316 126352339 -22431133 - L1ME3A LINE L1 -1417 4753 4732 404 337 30 50 chr11 126352595 126352797 -22430675 + MIR3 SINE MIR 11 208 0 476 283 0 14 chr11 126353010 126353148 -22430324 + MIR SINE MIR 32 167 -95 261 0 0 0 chr11 126354883 126354912 -22428560 + (T)n Simple_repeat Simple_repeat 1 29 0 356 278 178 18 chr11 126355273 126355442 -22428030 + MIR SINE MIR 57 252 -10 284 300 8 39 chr11 126355650 126355780 -22427692 + GA-rich Low_complexity Low_complexity 4 129 0 213 338 67 81 chr11 126355786 126356221 -22427251 + L2 LINE L2 2333 2761 -553 1952 172 50 25 chr11 126356363 126356486 -22426986 + Charlie5 DNA MER1_type 1 119 -2505 2309 47 7 10 chr11 126356486 126356783 -22426689 + AluY SINE Alu 1 296 -15 1952 172 50 25 chr11 126356783 126357055 -22426417 + Charlie5 DNA MER1_type 119 406 -2218 278 205 51 0 chr11 126357049 126357127 -22426345 + Charlie5 DNA MER1_type 2496 2577 -35 * 331 289 172 8 chr11 126357398 126357526 -22425946 + MIR SINE MIR 112 260 -2 2128 158 14 11 chr11 126357865 126358220 -22425252 + MLT1A1 LTR MaLR 10 365 0 757 145 119 63 chr11 126358971 126359130 -22424342 - AluJ SINE Alu -19 293 126 642 191 15 37 chr11 126359175 126359311 -22424161 - AluJ SINE Alu -178 134 2 875 263 102 60 chr11 126359439 126359892 -22423580 + MLT1J LTR MaLR 3 474 -37 436 312 45 7 chr11 126360387 126360541 -22422931 - MIR SINE MIR -56 206 47 2350 100 47 33 chr11 126360718 126361077 -22422395 - THE1B LTR MaLR 0 364 1 1064 115 0 0 chr11 126361484 126361640 -22421832 - AluSg/x SINE Alu 0 310 155 416 35 17 0 chr11 126361901 126361959 -22421513 + (CA)n Simple_repeat Simple_repeat 2 60 0 502 220 32 109 chr11 126362250 126362415 -22421057 - L1ME3A LINE L1 -220 5950 5774 2133 123 3 0 chr11 126362415 126362724 -22420748 + AluSx SINE Alu 1 310 -2 502 220 32 109 chr11 126362724 126362996 -22420476 - L1ME3A LINE L1 -396 5774 5572 216 0 0 0 chr11 126365497 126365521 -22417951 + (A)n Simple_repeat Simple_repeat 1 24 0 553 323 97 2 chr11 126365556 126365768 -22417704 + MIR SINE MIR 19 248 -14 3886 143 1 41 chr11 126366126 126366784 -22416688 + L1PA16 LINE L1 5515 6146 -20 515 262 136 55 chr11 126367174 126367402 -22416070 + MIR SINE MIR 16 256 -6 2319 101 3 0 chr11 126367907 126368203 -22415269 + AluSx SINE Alu 1 297 -15 180 163 0 0 chr11 126368785 126368828 -22414644 + (TG)n Simple_repeat Simple_repeat 1 43 0 188 182 23 0 chr11 126369477 126369521 -22413951 + GA-rich Low_complexity Low_complexity 1 45 0 367 308 46 0 chr11 126369660 126369790 -22413682 + L3b LINE CR1 1260 1395 -188 383 289 63 14 chr11 126370283 126370425 -22413047 - MIR SINE MIR -66 196 48 499 174 28 19 chr11 126370523 126370658 -22412814 + L1MB2 LINE L1 5329 5471 -700 505 97 0 0 chr11 126370875 126370958 -22412514 + L1MB3 LINE L1 5818 5900 -294 3442 160 36 40 chr11 126370968 126371630 -22411842 + L1MB2 LINE L1 5476 6137 -34 2013 120 22 0 chr11 126371630 126371933 -22411539 + AluSx SINE Alu 1 309 0 3442 160 36 40 chr11 126371933 126371968 -22411504 + L1MB2 LINE L1 6137 6171 0 307 221 32 42 chr11 126372972 126373067 -22410405 - MIR3 SINE MIR -6 202 109 204 333 42 0 chr11 126373367 126373439 -22410033 + L2 LINE L2 3198 3272 0 3363 154 17 41 chr11 126373507 126374161 -22409311 - L1MA9 LINE L1 0 6312 5675 756 162 0 17 chr11 126374403 126374563 -22408909 - FLAM_C SINE Alu 0 162 5 792 212 31 21 chr11 126374569 126374762 -22408710 + MER3 DNA MER1_type 15 209 0 267 208 0 0 chr11 126374719 126374772 -22408700 - MER3 DNA MER1_type -119 90 38 * 927 146 0 0 chr11 126376583 126376713 -22406759 - FLAM_C SINE Alu -13 130 1 262 167 83 17 chr11 126377695 126377755 -22405717 + MER91B DNA MER1_type 1 64 -126 924 333 81 25 chr11 126378386 126378803 -22404669 + L2 LINE L2 1420 1885 -1429 396 0 0 0 chr11 126378803 126378847 -22404625 + (CA)n Simple_repeat Simple_repeat 2 45 0 924 333 81 25 chr11 126378847 126379059 -22404413 + L2 LINE L2 1885 2084 -1230 647 248 106 10 chr11 126379084 126379282 -22404190 - MIR SINE MIR -26 236 20 412 324 105 0 chr11 126379314 126379493 -22403979 - MLT1I LTR MaLR -8 401 195 396 40 0 0 chr11 126379493 126379543 -22403929 + (GA)n Simple_repeat Simple_repeat 2 51 0 412 324 105 0 chr11 126379543 126379573 -22403899 - MLT1I LTR MaLR -214 195 170 326 208 28 0 chr11 126379580 126379652 -22403820 - MLT1J1 LTR MaLR -305 141 68 805 196 0 0 chr11 126379710 126379843 -22403629 - FLAM_A SINE Alu 0 133 1 4394 149 52 8 chr11 126379859 126380650 -22402822 - L1PA15 LINE L1 -1 6164 5339 1326 321 74 30 chr11 126380665 126381425 -22402047 + L2 LINE L2 2164 2956 -358 2291 103 0 32 chr11 126381450 126381762 -22401710 - AluSx SINE Alu -4 308 7 270 132 0 0 chr11 126381762 126381800 -22401672 - Alu SINE Alu -270 38 1 602 283 94 30 chr11 126381834 126382131 -22401341 + L2 LINE L2 2996 3311 -2 1816 171 104 41 chr11 126382491 126382954 -22400518 - MLT1D LTR MaLR -12 493 2 341 281 45 0 chr11 126383155 126383244 -22400228 + MIR SINE MIR 122 214 -48 2348 105 10 0 chr11 126383307 126383612 -22399860 - AluSx SINE Alu -4 308 1 1094 96 0 0 chr11 126383612 126383747 -22399725 - AluSq/x SINE Alu -177 135 1 544 275 65 65 chr11 126383747 126383947 -22399525 + MIR SINE MIR 48 247 -15 272 327 67 10 chr11 126384229 126384333 -22399139 + L2 LINE L2 3153 3262 -10 731 153 73 0 chr11 126384333 126384457 -22399015 + FLAM_C SINE Alu 1 133 0 1767 193 0 20 chr11 126384471 126384777 -22398695 + AluJo SINE Alu 3 302 -10 423 0 0 0 chr11 126387025 126387047 -22396425 + (TG)n Simple_repeat Simple_repeat 1 69 0 423 0 0 0 chr11 126387047 126387094 -22396378 + (TG)n Simple_repeat Simple_repeat 2 48 0 344 353 0 10 chr11 126387422 126387524 -22395948 + MIR SINE MIR 28 128 -134 470 276 75 29 chr11 126387566 126387740 -22395732 + MIR SINE MIR 50 231 -31 192 227 23 0 chr11 126388256 126388300 -22395172 - L2 LINE L2 -1 3312 3268 192 313 119 37 chr11 126388415 126388549 -22394923 + L3b LINE CR1 1185 1329 -254 339 316 96 19 chr11 126389734 126389909 -22393563 + MIR SINE MIR 6 192 -40 208 197 30 0 chr11 126391460 126391526 -22391946 + (TA)n Simple_repeat Simple_repeat 2 69 0 27 0 0 0 chr11 126391528 126391555 -22391917 + AT_rich Low_complexity Low_complexity 1 27 0 1826 138 30 0 chr11 126391736 126392004 -22391468 - AluJo SINE Alu -1 311 36 238 392 122 0 chr11 126393087 126393235 -22390237 + L2 LINE L2 3107 3272 0 1353 175 77 35 chr11 126393336 126393621 -22389851 - AluJo SINE Alu -3 309 13 237 208 0 42 chr11 126393980 126394076 -22389396 + GA-rich Low_complexity Low_complexity 2 93 0 835 283 38 8 chr11 126394085 126394325 -22389147 - MIR SINE MIR -13 249 3 184 404 10 10 chr11 126395746 126395845 -22387627 + L2 LINE L2 2566 2664 -650 1028 152 0 0 chr11 126395889 126396034 -22387438 + FRAM SINE Alu 1 140 -36 261 0 0 0 chr11 126396044 126396073 -22387399 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 978 241 19 5 chr11 126396087 126396294 -22387178 - MIR SINE MIR 0 262 53 340 249 49 129 chr11 126396644 126396739 -22386733 + MIR SINE MIR 4 105 -157 2360 73 9 29 chr11 126396739 126396865 -22386607 + AluY SINE Alu 1 128 -183 387 0 0 0 chr11 126396865 126396908 -22386564 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2360 73 9 29 chr11 126396908 126397096 -22386376 + AluY SINE Alu 128 309 -2 340 249 49 129 chr11 126397096 126397225 -22386247 + MIR SINE MIR 105 210 -52 294 320 118 6 chr11 126397258 126397436 -22386036 + L2 LINE L2 3101 3298 -15 2264 79 55 3 chr11 126397439 126397729 -22385743 + AluSx SINE Alu 1 305 -7 553 219 22 96 chr11 126398608 126398786 -22384686 + MER5B DNA MER1_type 5 169 -9 261 299 165 0 chr11 126400326 126400423 -22383049 - MIR SINE MIR -59 149 37 291 299 13 0 chr11 126400447 126400524 -22382948 + MIR SINE MIR 185 262 0 2109 143 0 0 chr11 126400551 126400845 -22382627 - AluJb SINE Alu -3 309 16 401 290 83 121 chr11 126400856 126401287 -22382185 - L2 LINE L2 -5 3267 2853 336 277 174 7 chr11 126401699 126401834 -22381638 + MIR3 SINE MIR 49 207 -1 1928 152 0 13 chr11 126402737 126403046 -22380426 + AluJb SINE Alu 1 305 -7 295 345 164 0 chr11 126403593 126403758 -22379714 + MIR SINE MIR 6 197 -65 27 29 0 0 chr11 126403874 126403908 -22379564 + AT_rich Low_complexity Low_complexity 1 34 0 329 42 0 21 chr11 126403930 126403978 -22379494 + (TA)n Simple_repeat Simple_repeat 2 48 0 1561 185 80 0 chr11 126404011 126404177 -22379295 - AluJb SINE Alu -3 309 158 273 98 0 0 chr11 126404177 126404218 -22379254 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 1561 185 80 0 chr11 126404218 126404337 -22379135 - AluJb SINE Alu -154 158 1 291 204 126 58 chr11 126406734 126406837 -22376635 - MIR3 SINE MIR -8 200 91 904 174 0 0 chr11 126406916 126407060 -22376412 + FRAM SINE Alu 1 144 -32 1787 159 7 23 chr11 126407060 126407368 -22376104 - AluJo SINE Alu -8 304 2 210 37 0 0 chr11 126407385 126407412 -22376060 + (TAA)n Simple_repeat Simple_repeat 1 27 0 2855 110 34 5 chr11 126407788 126408198 -22375274 + MSTA LTR MaLR 5 426 -2 433 271 73 17 chr11 126409439 126409616 -22373856 - MIR3 SINE MIR -5 203 17 1185 264 57 54 chr11 126410023 126410448 -22373024 + L2 LINE L2 2888 3313 0 306 276 31 20 chr11 126410456 126410554 -22372918 - MIR3 SINE MIR 0 208 110 183 184 0 0 chr11 126410636 126410674 -22372798 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 27 81 0 0 chr11 126410713 126410775 -22372697 + AT_rich Low_complexity Low_complexity 1 62 0 616 282 108 9 chr11 126410779 126410992 -22372480 - MIR SINE MIR -16 246 13 455 289 47 1 chr11 126412048 126412195 -22371277 - MIR SINE MIR -61 147 15 1945 154 80 11 chr11 126412543 126412894 -22370578 - THE1C LTR MaLR 0 375 1 441 311 106 52 chr11 126413024 126413448 -22370024 + L2 LINE L2 2819 3265 -7 2172 141 31 3 chr11 126413543 126413925 -22369547 + L1MB3 LINE L1 5739 6131 -52 1819 161 0 47 chr11 126413929 126414246 -22369226 - AluJo SINE Alu -10 302 1 579 264 45 0 chr11 126414435 126414590 -22368882 - MIR SINE MIR -54 208 47 722 254 37 31 chr11 126415895 126416149 -22367323 + MIR SINE MIR 11 262 0 344 198 47 35 chr11 126416345 126416431 -22367041 + MIR SINE MIR 153 239 -23 829 250 20 20 chr11 126416431 126416631 -22366841 + MIR SINE MIR 1 200 -62 448 298 23 8 chr11 126416630 126416761 -22366711 + MIR SINE MIR 21 153 -109 * 1526 187 13 20 chr11 126416783 126417083 -22366389 + AluJb SINE Alu 14 311 -1 2270 114 0 0 chr11 126417380 126417679 -22365793 + AluSq SINE Alu 1 299 -14 1863 150 16 0 chr11 126417775 126418081 -22365391 + AluJb SINE Alu 1 311 -1 294 50 0 0 chr11 126418115 126418155 -22365317 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 403 60 0 0 chr11 126418155 126418205 -22365267 - MER51D LTR ERV1 -108 549 500 1105 157 52 8 chr11 126418443 126418789 -22364683 + Tigger1 DNA MER2_type 1 2414 -4 196 272 22 76 chr11 126420460 126420552 -22362920 + L2 LINE L2 3137 3223 -49 437 294 80 32 chr11 126422022 126422209 -22361263 - L3b LINE CR1 -34 1549 1354 354 286 53 30 chr11 126423402 126423535 -22359937 + L2 LINE L2 3136 3271 -1 914 227 106 0 chr11 126424363 126424570 -22358902 + MIR SINE MIR 13 241 -21 341 262 120 58 chr11 126425267 126425458 -22358014 - MIR SINE MIR -48 214 12 254 350 80 20 chr11 126426248 126426448 -22357024 - L3b LINE CR1 -115 1468 1257 186 352 0 0 chr11 126426799 126426853 -22356619 + L2 LINE L2 3009 3062 -210 374 276 37 37 chr11 126426875 126427009 -22356463 - MIR SINE MIR -9 253 120 184 145 43 116 chr11 126427565 126427634 -22355838 - L2 LINE L2 -49 3223 3160 258 237 68 0 chr11 126427838 126427897 -22355575 + L2 LINE L2 3248 3310 -3 338 269 19 19 chr11 126428619 126428723 -22354749 - MIR3 SINE MIR -47 161 58 2151 92 7 3 chr11 126428757 126429049 -22354423 - AluSq SINE Alu -20 293 1 1060 98 44 33 chr11 126429226 126429409 -22354063 - L1MA5A LINE L1 -1 6296 6112 240 330 117 0 chr11 126429530 126429633 -22353839 + L2 LINE L2 3199 3313 0 2137 102 3 0 chr11 126429761 126430056 -22353416 + AluSx SINE Alu 1 296 -16 279 0 0 0 chr11 126430078 126430109 -22353363 + (CA)n Simple_repeat Simple_repeat 2 32 0 249 286 9 38 chr11 126430132 126430237 -22353235 - MIR SINE MIR -113 149 48 5788 119 56 62 chr11 126430962 126432126 -22351346 + pTR5 LTR ERV1 730 2025 -413 334 255 10 0 chr11 126432126 126432224 -22351248 + LTR30 LTR ERV1 544 642 -80 1746 89 0 4 chr11 126432227 126432463 -22351009 + pTR5 LTR ERV1 172 406 -2032 2167 116 3 6 chr11 126432518 126432829 -22350643 + AluSq SINE Alu 1 310 -3 232 228 0 53 chr11 126434043 126434100 -22349372 + MIR3 SINE MIR 107 160 -48 573 304 106 0 chr11 126434350 126434567 -22348905 + MIR SINE MIR 21 260 -2 245 167 0 17 chr11 126435232 126435292 -22348180 + GA-rich Low_complexity Low_complexity 1 59 0 593 300 32 65 chr11 126436080 126436189 -22347283 + MIR SINE MIR 11 122 -140 2002 119 0 56 chr11 126436189 126436508 -22346964 + AluSx SINE Alu 1 301 -11 593 300 32 65 chr11 126436508 126436612 -22346860 + MIR SINE MIR 122 217 -45 1910 125 0 0 chr11 126436612 126436884 -22346588 + AluSx SINE Alu 39 310 -2 593 300 32 65 chr11 126436884 126436916 -22346556 + MIR SINE MIR 217 249 -13 22 0 0 0 chr11 126436916 126436938 -22346534 + AT_rich Low_complexity Low_complexity 1 22 0 369 209 136 136 chr11 126438146 126438234 -22345238 + MIR SINE MIR 41 128 -134 630 165 0 0 chr11 126438234 126438337 -22345135 + U13 snRNA snRNA 2 104 0 369 209 136 136 chr11 126438337 126438454 -22345018 + MIR SINE MIR 127 246 -16 396 282 34 17 chr11 126438521 126438638 -22344834 - MIR SINE MIR -58 204 86 403 300 49 54 chr11 126440570 126440793 -22342679 + MIR SINE MIR 41 262 0 2148 104 7 7 chr11 126440821 126441129 -22342343 + AluSx SINE Alu 2 309 -3 231 263 175 76 chr11 126443067 126443238 -22340234 + L3b LINE CR1 1200 1387 -196 2232 104 7 0 chr11 126443464 126443772 -22339700 + AluSx SINE Alu 1 310 -2 21 36 0 0 chr11 126443975 126444003 -22339469 + AT_rich Low_complexity Low_complexity 1 28 0 306 290 32 11 chr11 126444037 126444130 -22339342 + L3 LINE CR1 1482 1576 -1 1877 161 11 39 chr11 126444248 126444558 -22338914 + L1MB3 LINE L1 5832 6132 -51 1833 137 7 33 chr11 126444558 126444865 -22338607 + AluJb SINE Alu 1 299 -13 1877 161 11 39 chr11 126444865 126444914 -22338558 + L1MB3 LINE L1 6132 6181 -2 21 0 0 0 chr11 126445857 126445878 -22337594 + AT_rich Low_complexity Low_complexity 1 21 0 971 240 255 10 chr11 126446061 126446477 -22336995 + LTR50 LTR ERVL 38 555 -240 364 313 56 0 chr11 126446477 126446621 -22336851 + LTR50 LTR ERVL 474 625 -170 415 164 14 0 chr11 126446627 126446700 -22336772 + LTR33A LTR ERVL 441 514 -9 857 190 0 23 chr11 126446990 126447164 -22336308 + AluJb SINE Alu 137 306 -6 487 287 21 14 chr11 126447809 126447952 -22335520 + MIR SINE MIR 69 212 -50 2051 129 0 0 chr11 126448619 126448914 -22334558 + AluSx SINE Alu 1 295 -17 1333 247 91 31 chr11 126449137 126449651 -22333821 - L1ME4a LINE L1 -34 6087 5543 1610 147 85 0 chr11 126449693 126449965 -22333507 + AluSx SINE Alu 1 295 -17 806 141 0 16 chr11 126450086 126450214 -22333258 - FLAM_C SINE Alu -17 126 1 250 286 0 0 chr11 126450219 126450275 -22333197 - L2 LINE L2 0 3272 3217 457 301 100 13 chr11 126450452 126450691 -22332781 + MIR SINE MIR 3 262 0 200 336 35 60 chr11 126451415 126451531 -22331941 + MIR3 SINE MIR 1 113 -95 180 261 14 72 chr11 126451588 126451657 -22331815 - MIR3 SINE MIR -7 201 137 * 1733 252 157 12 chr11 126451652 126452265 -22331207 - L2 LINE L2 0 3313 2534 1016 226 27 27 chr11 126452265 126452526 -22330946 - MIR SINE MIR 0 262 2 1733 252 157 12 chr11 126452526 126452790 -22330682 - L2 LINE L2 -779 2534 2310 180 0 0 0 chr11 126453612 126453632 -22329840 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 201 287 11 0 chr11 126454179 126454266 -22329206 + (CAAT)n Simple_repeat Simple_repeat 2 89 0 180 286 19 76 chr11 126454628 126454733 -22328739 + L2 LINE L2 3170 3268 -4 4543 62 3 0 chr11 126454749 126455325 -22328147 + L1PA6 LINE L1 5576 6153 -1 203 208 167 0 chr11 126455414 126455462 -22328010 + L2 LINE L2 2409 2464 -850 277 306 8 50 chr11 126456094 126456215 -22327257 - MIR3 SINE MIR -7 201 86 273 296 25 75 chr11 126456493 126456663 -22326809 - MER5B DNA MER1_type -2 187 23 387 0 0 0 chr11 126458120 126458163 -22325309 + (CA)n Simple_repeat Simple_repeat 2 44 0 1724 139 85 0 chr11 126459776 126460057 -22323415 + AluSq SINE Alu 1 305 -8 283 212 47 148 chr11 126460225 126460461 -22323011 - L1MC4 LINE L1 -1 8041 7830 3107 202 86 35 chr11 126460499 126460547 -22322925 - L1ME2 LINE L1 -10 6154 6110 1594 175 49 3 chr11 126460547 126460832 -22322640 + AluSx SINE Alu 1 298 -14 3107 202 86 35 chr11 126460832 126461613 -22321859 - L1ME2 LINE L1 -54 6110 5283 1401 117 0 10 chr11 126461622 126461887 -22321585 - AluSg/x SINE Alu 0 340 78 1885 136 7 7 chr11 126461900 126462194 -22321278 - AluSx SINE Alu -12 300 7 1870 157 0 0 chr11 126462194 126462487 -22320985 - AluJb SINE Alu -19 293 1 496 229 46 8 chr11 126462487 126462618 -22320854 - L1ME2 LINE L1 -1106 5040 4905 1026 192 10 0 chr11 126462621 126462814 -22320658 + AluJo SINE Alu 7 201 -111 500 190 20 11 chr11 126462856 126462982 -22320490 - L1ME2 LINE L1 -1236 4910 4782 476 307 20 13 chr11 126463127 126463277 -22320195 - MIR3 SINE MIR -18 190 40 325 300 136 36 chr11 126463311 126463451 -22320021 - L2 LINE L2 -89 3183 3030 2131 113 0 3 chr11 126463460 126463761 -22319711 + AluSx SINE Alu 5 304 -8 201 39 0 0 chr11 126463985 126464011 -22319461 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 549 271 39 15 chr11 126464121 126464330 -22319142 + MIR SINE MIR 3 210 -52 746 284 72 45 chr11 126464701 126465029 -22318443 - MLT1I LTR MaLR -6 403 63 2477 110 95 0 chr11 126465029 126465420 -22318052 - MSTA LTR MaLR 0 428 1 746 284 72 45 chr11 126465420 126465450 -22318022 - MLT1I LTR MaLR -346 63 35 1690 150 35 7 chr11 126465458 126465745 -22317727 + AluSx SINE Alu 10 304 -8 1228 43 5 27 chr11 126465757 126465941 -22317531 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 328 94 0 47 chr11 126465951 126466015 -22317457 + (GGGGA)n Simple_repeat Simple_repeat 4 64 0 219 69 0 0 chr11 126466344 126466373 -22317099 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 609 299 58 29 chr11 126466498 126466739 -22316733 - MIR SINE MIR -2 260 13 432 264 36 29 chr11 126467046 126467186 -22316286 + L3b LINE CR1 1265 1405 -178 221 237 215 54 chr11 126467276 126467323 -22316149 - L2 LINE L2 0 3313 3275 1446 181 86 31 chr11 126467323 126467648 -22315824 + MER2 DNA MER2_type 1 343 -1 221 237 215 54 chr11 126467648 126467693 -22315779 - L2 LINE L2 -38 3275 3206 2309 213 39 22 chr11 126467883 126468376 -22315096 - MLT1D LTR MaLR -4 501 1 249 28 56 0 chr11 126468645 126468681 -22314791 + (TTTA)n Simple_repeat Simple_repeat 3 180 0 1408 134 31 118 chr11 126468681 126469003 -22314469 - AluYb8 SINE Alu -1 329 1 269 274 0 0 chr11 126469016 126469078 -22314394 - MIR SINE MIR -10 252 191 1056 296 46 3 chr11 126469089 126469481 -22313991 - HAL1 LINE L1 0 2507 2099 1001 203 5 16 chr11 126469483 126469670 -22313802 + MER8 DNA MER2_type 55 239 0 245 330 11 21 chr11 126469868 126469962 -22313510 - MIR SINE MIR -165 97 5 231 125 0 0 chr11 126470258 126470298 -22313174 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 201 154 0 0 chr11 126470433 126470472 -22313000 + (CA)n Simple_repeat Simple_repeat 1 39 0 2418 91 0 0 chr11 126470850 126471194 -22312278 - AluSq SINE Alu 0 348 5 223 170 0 0 chr11 126471243 126471290 -22312182 + A-rich Low_complexity Low_complexity 1 47 0 344 40 20 0 chr11 126471584 126471634 -22311838 + (CA)n Simple_repeat Simple_repeat 1 51 0 2826 16 0 0 chr11 126472562 126472868 -22310604 - AluYb8 SINE Alu -11 307 2 245 188 21 0 chr11 126472966 126473014 -22310458 + L2 LINE L2 3261 3309 -4 * 286 369 58 0 chr11 126473012 126473151 -22310321 - MIR SINE MIR -68 140 8 2071 142 0 0 chr11 126473387 126473689 -22309783 + AluSx SINE Alu 1 302 -10 294 298 84 8 chr11 126473983 126474114 -22309358 - MIR SINE MIR -45 217 77 502 203 51 34 chr11 126474502 126474620 -22308852 - L2 LINE L2 -1 3312 3193 188 364 30 10 chr11 126475303 126475402 -22308070 + L2 LINE L2 2955 3055 -217 234 245 0 38 chr11 126476226 126476279 -22307193 - L2 LINE L2 -27 3245 3195 1078 159 248 39 chr11 126476491 126476992 -22306480 + LTR29 LTR ERV1 1 595 0 378 314 205 0 chr11 126477226 126477436 -22306036 - L3 LINE CR1 -6 1571 1319 4008 118 58 58 chr11 126477472 126477645 -22305827 + MER50 LTR ERV1 1 173 -561 2181 127 13 0 chr11 126477645 126477952 -22305520 + AluSx SINE Alu 1 311 -1 4008 118 58 58 chr11 126477952 126478268 -22305204 + MER50 LTR ERV1 173 493 -241 2380 89 0 6 chr11 126478268 126478582 -22304890 + AluSq SINE Alu 1 312 -1 4008 118 58 58 chr11 126478582 126478802 -22304670 + MER50 LTR ERV1 492 711 -23 393 138 138 0 chr11 126479335 126479415 -22304057 + MER20 DNA MER1_type 129 219 0 205 291 0 0 chr11 126479898 126479953 -22303519 - MIR SINE MIR -50 212 158 249 254 17 0 chr11 126480030 126480089 -22303383 + GA-rich Low_complexity Low_complexity 3 62 0 540 304 21 66 chr11 126480738 126481024 -22302448 + L2 LINE L2 2818 3090 -223 398 300 69 8 chr11 126481680 126481810 -22301662 + L2 LINE L2 3175 3312 -1 204 321 83 0 chr11 126482015 126482099 -22301373 - MIR SINE MIR -108 154 64 233 75 25 0 chr11 126482778 126482818 -22300654 + (TTTA)n Simple_repeat Simple_repeat 4 44 0 402 21 0 0 chr11 126483438 126483485 -22299987 + (CA)n Simple_repeat Simple_repeat 2 48 0 23 0 0 0 chr11 126483702 126483725 -22299747 + AT_rich Low_complexity Low_complexity 1 23 0 380 146 0 0 chr11 126485014 126485069 -22298403 - U6 snRNA snRNA -52 55 1 528 351 63 24 chr11 126485663 126486088 -22297384 + L2 LINE L2 578 1019 -2295 212 220 186 0 chr11 126486184 126486243 -22297229 - MIR SINE MIR -113 149 80 551 208 54 23 chr11 126486243 126486373 -22297099 - MER45 DNA AcHobo 0 1581 1448 841 144 23 23 chr11 126486377 126486509 -22296963 - AluJo SINE Alu -177 135 4 252 59 0 0 chr11 126486515 126486549 -22296923 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 3072 92 31 0 chr11 126486554 126486978 -22296494 - L1PA11 LINE L1 -20 6154 5718 2276 78 17 0 chr11 126487007 126487302 -22296170 + AluY SINE Alu 1 300 -11 2256 203 57 0 chr11 126487408 126487996 -22295476 - L1 LINE L1 -3401 3447 2778 13363 181 33 15 chr11 126487996 126488484 -22294988 - L1 LINE L1 -4383 2466 1988 180 0 0 0 chr11 126488484 126488504 -22294968 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 13363 181 33 15 chr11 126488504 126490436 -22293036 - L1 LINE L1 -4861 1988 3 261 167 0 37 chr11 126490518 126490572 -22292900 - L1MC4 LINE L1 -1339 6703 6652 231 189 0 0 chr11 126490678 126490731 -22292741 + (TATATG)n Simple_repeat Simple_repeat 3 55 0 241 311 14 14 chr11 126490947 126491021 -22292451 - MIR SINE MIR -10 252 179 204 40 0 0 chr11 126493240 126493265 -22290207 + (TG)n Simple_repeat Simple_repeat 1 25 0 351 289 29 10 chr11 126493272 126493376 -22290096 - MIR SINE MIR -71 191 86 1224 268 36 69 chr11 126493842 126494335 -22289137 - L1ME3A LINE L1 -8 6162 5686 1062 134 0 24 chr11 126494336 126494500 -22288972 - AluSg/x SINE Alu -16 296 137 2066 257 95 47 chr11 126494502 126496269 -22287203 - L1ME3A LINE L1 -471 5691 3850 8102 30 0 2 chr11 126496270 126497607 -22285865 - L1PA4 LINE L1 0 6155 4820 3511 251 57 42 chr11 126497609 126498888 -22284584 + L1ME3 LINE L1 3921 5257 -905 1987 119 7 0 chr11 126498888 126499157 -22284315 + AluSx SINE Alu 38 308 -4 3511 251 57 42 chr11 126499157 126500068 -22283404 + L1ME3 LINE L1 5257 6152 -10 482 230 27 124 chr11 126500140 126500397 -22283075 + HAL1 LINE L1 1424 1655 -852 609 200 29 67 chr11 126500737 126500947 -22282525 + HAL1b LINE L1 733 934 -414 1692 144 15 90 chr11 126501141 126501368 -22282104 - MER7A DNA MER2_type -2730 308 114 734 148 62 23 chr11 126501368 126501496 -22281976 + FLAM_C SINE Alu 1 133 0 1692 144 15 90 chr11 126501496 126501602 -22281870 - MER7A DNA MER2_type -2924 114 2 233 231 39 26 chr11 126502400 126502478 -22280994 + L1MC/D LINE L1 5768 5846 -1962 14587 171 25 25 chr11 126502497 126505342 -22278130 - L1MA4A LINE L1 -5 7000 4101 6796 94 6 2 chr11 126505342 126506617 -22276855 - L1PA10 LINE L1 -3 6165 4890 14587 171 25 25 chr11 126506617 126507941 -22275531 - L1MA4A LINE L1 -2904 4101 2778 13372 182 32 15 chr11 126507941 126508430 -22275042 - L1MA4A LINE L1 -4383 2466 1987 180 0 0 0 chr11 126508430 126508450 -22275022 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 13372 182 32 15 chr11 126508450 126510382 -22273090 - L1MA4A LINE L1 -4862 1987 3 252 185 0 37 chr11 126510464 126510518 -22272954 - L1MC4 LINE L1 -1339 6703 6652 21 36 0 0 chr11 126510569 126510597 -22272875 + AT_rich Low_complexity Low_complexity 1 28 0 189 196 0 0 chr11 126510624 126510670 -22272802 + (TATATG)n Simple_repeat Simple_repeat 4 49 0 303 233 0 0 chr11 126510670 126510730 -22272742 - L1MC4 LINE L1 -1339 6703 6644 209 306 42 14 chr11 126510934 126511006 -22272466 - MIR SINE MIR -10 252 179 222 37 0 0 chr11 126513225 126513252 -22270220 + (TG)n Simple_repeat Simple_repeat 1 27 0 351 289 29 10 chr11 126513259 126513363 -22270109 - MIR SINE MIR -71 191 86 1242 266 36 69 chr11 126513829 126514322 -22269150 - L1ME3A LINE L1 -8 6162 5686 1090 128 0 24 chr11 126514323 126514487 -22268985 - AluSg/x SINE Alu -16 296 137 2277 250 91 36 chr11 126514488 126516240 -22267232 - L1ME3A LINE L1 -471 5691 3850 23859 29 1 3 chr11 126516241 126520442 -22263030 - L1PA4 LINE L1 0 6155 1959 3776 86 29 0 chr11 126520442 126520933 -22262539 - L1PA4 LINE L1 -5635 511 7 2351 106 0 0 chr11 126520953 126521264 -22262208 - AluY SINE Alu 0 311 1 1257 262 84 37 chr11 126521264 126521585 -22261887 - L1ME3A LINE L1 -2286 3860 3500 216 97 0 0 chr11 126521585 126521616 -22261856 + (TG)n Simple_repeat Simple_repeat 1 31 0 1257 262 84 37 chr11 126521616 126521856 -22261616 - L1ME3A LINE L1 -2646 3500 3273 875 172 137 10 chr11 126522109 126522313 -22261159 - L1ME3A LINE L1 -1 6169 5940 1824 255 42 20 chr11 126522322 126522911 -22260561 - L1ME3A LINE L1 -278 5892 5291 303 202 106 11 chr11 126522898 126522992 -22260480 - L1ME4a LINE L1 -1 6120 6018 * 180 340 91 21 chr11 126523471 126523712 -22259760 + L2 LINE L2 2596 2853 -461 221 350 0 0 chr11 126523959 126524019 -22259453 + L2 LINE L2 3238 3297 -16 677 269 72 24 chr11 126524063 126524271 -22259201 - MIR SINE MIR -6 256 39 216 236 18 0 chr11 126524319 126524374 -22259098 + (TAA)n Simple_repeat Simple_repeat 1 56 0 334 325 33 0 chr11 126524433 126524580 -22258892 - MIR SINE MIR -58 150 38 21 0 0 0 chr11 126524808 126524829 -22258643 + AT_rich Low_complexity Low_complexity 1 21 0 278 210 0 0 chr11 126526481 126526543 -22256929 - MIR SINE MIR 0 262 201 223 326 29 60 chr11 126527844 126528191 -22255281 + L2 LINE L2 2540 2875 -439 287 309 146 45 chr11 126528201 126528625 -22254847 - L2 LINE L2 -36 3277 2811 715 246 107 83 chr11 126528676 126529244 -22254228 + HAL1 LINE L1 610 1191 -1316 387 292 24 21 chr11 126529253 126529451 -22254021 - MIR3 SINE MIR -49 213 13 981 158 0 0 chr11 126530538 126530715 -22252757 + (TGGA)n Simple_repeat Simple_repeat 3 179 0 286 303 38 30 chr11 126531053 126531185 -22252287 + MIR3 SINE MIR 44 176 -32 240 342 0 53 chr11 126531870 126531984 -22251488 + MIR SINE MIR 81 188 -74 229 336 75 0 chr11 126533114 126533248 -22250224 - MIR3 SINE MIR -7 201 58 245 319 52 26 chr11 126534427 126534543 -22248929 - MIR3 SINE MIR -45 163 45 806 174 6 0 chr11 126534890 126535057 -22248415 + (TCCA)n Simple_repeat Simple_repeat 4 171 0 251 300 25 65 chr11 126535803 126536003 -22247469 - L3b LINE CR1 -177 1406 1215 227 79 26 0 chr11 126536005 126536043 -22247429 + (TC)n Simple_repeat Simple_repeat 2 40 0 1082 254 78 92 chr11 126536748 126537302 -22246170 + MLT1H LTR MaLR 4 549 0 199 327 0 0 chr11 126537385 126537440 -22246032 + L2 LINE L2 2797 2851 -463 198 277 170 0 chr11 126537746 126537858 -22245614 - MER5B DNA MER1_type -46 132 2 441 0 0 0 chr11 126537888 126537937 -22245535 + (TG)n Simple_repeat Simple_repeat 2 50 0 227 355 58 16 chr11 126538632 126538753 -22244719 + L2 LINE L2 3145 3270 -2 406 315 55 51 chr11 126539303 126539538 -22243934 + MIR SINE MIR 1 236 -26 237 83 0 0 chr11 126540524 126540560 -22242912 + (TG)n Simple_repeat Simple_repeat 2 37 0 319 302 203 0 chr11 126540920 126541122 -22242350 + MIR SINE MIR 20 262 0 207 372 0 35 chr11 126541188 126541274 -22242198 + MIR SINE MIR 33 115 -93 22 0 0 0 chr11 126541526 126541548 -22241924 + AT_rich Low_complexity Low_complexity 1 22 0 216 267 40 13 chr11 126541754 126541829 -22241643 - L3 LINE CR1 -191 1386 1310 255 162 135 40 chr11 126542037 126542111 -22241361 - MLT1J1 LTR MaLR -9 437 357 489 296 59 24 chr11 126542203 126542372 -22241100 - MLT1J2 LTR MaLR -211 239 65 1088 270 62 25 chr11 126543267 126543667 -22239805 - L3 LINE CR1 -489 1088 674 1430 249 119 36 chr11 126543953 126544878 -22238594 + L2 LINE L2 2313 3311 -2 203 297 99 55 chr11 126546635 126546726 -22236746 + L2 LINE L2 3158 3252 -20 265 240 41 89 chr11 126546819 126546965 -22236507 + MIR SINE MIR 60 198 -64 277 344 52 32 chr11 126547093 126547247 -22236225 - L2 LINE L2 0 3272 3116 548 246 22 0 chr11 126548294 126548428 -22235044 + L2 LINE L2 3175 3311 -2 287 146 18 0 chr11 126548537 126548592 -22234880 + (TTCA)n Simple_repeat Simple_repeat 1 56 0 230 159 43 72 chr11 126548750 126548819 -22234653 + L3 LINE CR1 1510 1576 -1 235 371 0 0 chr11 126549354 126549443 -22234029 - MIR SINE MIR -60 148 60 293 273 10 10 chr11 126550408 126550507 -22232965 - MIR SINE MIR 0 262 164 299 260 68 41 chr11 126550528 126550541 -22232931 - L2 LINE L2 0 3313 3302 1593 196 7 0 chr11 126550541 126550822 -22232650 - AluJb SINE Alu -27 285 3 299 260 68 41 chr11 126550822 126550954 -22232518 - L2 LINE L2 -11 3302 3164 331 298 44 26 chr11 126552292 126552406 -22231066 + L2 LINE L2 3156 3271 -1 2269 121 12 18 chr11 126553433 126553772 -22229700 + MER1B DNA MER1_type 1 337 0 740 178 0 22 chr11 126553803 126553938 -22229534 + FLAM_C SINE Alu 2 133 0 804 297 50 33 chr11 126553938 126554480 -22228992 + L1M4 LINE L1 4764 5314 -832 308 24 0 24 chr11 126555883 126555935 -22227537 + (TCC)n Simple_repeat Simple_repeat 1 91 0 308 24 0 24 chr11 126555935 126555977 -22227495 + (TCC)n Simple_repeat Simple_repeat 1 41 0 353 69 0 17 chr11 126556803 126556861 -22226611 + (TC)n Simple_repeat Simple_repeat 1 57 0 256 320 112 16 chr11 126556896 126557021 -22226451 - L2 LINE L2 -14 3258 3122 443 213 183 24 chr11 126560229 126560393 -22223079 - MIR SINE MIR -40 222 33 260 276 13 0 chr11 126560416 126560492 -22222980 - L3 LINE CR1 -105 1472 1396 359 261 0 0 chr11 126561229 126561317 -22222155 + MIR SINE MIR 45 132 -130 398 276 130 0 chr11 126562177 126562300 -22221172 + L2 LINE L2 3123 3261 -11 355 330 22 16 chr11 126563504 126563689 -22219783 - MIR SINE MIR -7 255 70 568 314 11 11 chr11 126563706 126563894 -22219578 + MIR SINE MIR 75 262 0 1681 191 0 0 chr11 126563918 126564196 -22219276 - AluJb SINE Alu -28 284 7 521 305 116 4 chr11 126564257 126564490 -22218982 - MIR SINE MIR 0 262 4 225 263 18 0 chr11 126564659 126564716 -22218756 + CT-rich Low_complexity Low_complexity 4 61 0 292 301 0 12 chr11 126565011 126565094 -22218378 + L3 LINE CR1 1425 1506 -71 2034 103 81 39 chr11 126565907 126566267 -22217205 + THE1C LTR MaLR 1 375 0 239 275 0 50 chr11 126568341 126568421 -22215051 + MIR SINE MIR 77 152 -110 630 293 57 0 chr11 126568425 126568671 -22214801 - MIR SINE MIR 0 262 3 746 305 111 31 chr11 126568730 126569244 -22214228 + MLT1H1 LTR MaLR 1 555 0 271 300 6 47 chr11 126569824 126569923 -22213549 + GA-rich Low_complexity Low_complexity 4 95 -71 180 0 0 0 chr11 126569923 126569943 -22213529 + (GA)n Simple_repeat Simple_repeat 1 20 0 271 300 6 47 chr11 126569943 126570013 -22213459 + GA-rich Low_complexity Low_complexity 95 166 0 262 250 0 0 chr11 126571650 126571710 -22211762 + MIR SINE MIR 81 140 -122 954 213 14 46 chr11 126571761 126571977 -22211495 - MER63A DNA MER1_type -1 209 1 187 319 0 29 chr11 126572950 126573019 -22210453 + L2 LINE L2 3247 3313 0 207 267 0 0 chr11 126574172 126574217 -22209255 + CT-rich Low_complexity Low_complexity 3 47 0 573 307 110 18 chr11 126575212 126575538 -22207934 + LTR16C LTR ERVL 126 481 -10 218 407 19 15 chr11 126575542 126575812 -22207660 - L2 LINE L2 -993 2321 2051 1820 160 91 25 chr11 126576925 126577288 -22206184 + MLT1B LTR MaLR 4 390 0 269 161 18 0 chr11 126578411 126578467 -22205005 + L2 LINE L2 3206 3262 -10 26 0 0 0 chr11 126580014 126580040 -22203432 + AT_rich Low_complexity Low_complexity 1 26 0 1314 265 110 34 chr11 126580060 126580562 -22202910 - L1ME3A LINE L1 -76 6094 5555 288 77 0 0 chr11 126581156 126581195 -22202277 + (CGTG)n Simple_repeat Simple_repeat 1 39 0 331 257 10 0 chr11 126581977 126582074 -22201398 - MIR3 SINE MIR -39 169 71 225 298 88 9 chr11 126582699 126582813 -22200659 + MIR SINE MIR 21 143 -65 273 196 0 0 chr11 126583028 126583084 -22200388 + (CATA)n Simple_repeat Simple_repeat 3 58 0 282 137 63 0 chr11 126583149 126583244 -22200228 + (TA)n Simple_repeat Simple_repeat 2 102 0 267 194 56 0 chr11 126583294 126583402 -22200070 + (TA)n Simple_repeat Simple_repeat 1 114 0 424 309 153 9 chr11 126584952 126585175 -22198297 + MIR SINE MIR 2 256 -6 296 228 38 0 chr11 126585184 126585263 -22198209 - MIR SINE MIR -124 138 57 * 506 335 125 36 chr11 126585262 126586548 -22196924 - L2 LINE L2 -1 3271 1864 2018 161 7 0 chr11 126586599 126586909 -22196563 + AluSx SINE Alu 1 312 0 595 99 20 10 chr11 126586912 126587013 -22196459 + (GGAA)n Simple_repeat Simple_repeat 3 104 0 744 99 0 0 chr11 126587097 126587208 -22196264 + (CTATT)n Simple_repeat Simple_repeat 1 111 0 412 207 0 12 chr11 126587208 126587290 -22196182 + MER112 DNA MER1_type 180 260 0 387 286 45 59 chr11 126587345 126587565 -22195907 + MIR SINE MIR 20 236 -26 377 377 18 6 chr11 126589115 126589282 -22194190 + MIR SINE MIR 17 185 -77 818 208 45 13 chr11 126589324 126589577 -22193895 - L1MCa LINE L1 -4181 2246 1644 760 208 39 0 chr11 126590506 126590684 -22192788 - L1M2 LINE L1 -4386 2721 2537 213 94 0 0 chr11 126590685 126590717 -22192755 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 3510 227 54 42 chr11 126591178 126592475 -22190997 - L1M2 LINE L1 -4632 2405 1081 1629 162 38 58 chr11 126592478 126592823 -22190649 - L1M2 LINE L1 -6692 338 1 213 253 139 0 chr11 126592828 126592907 -22190565 + MIR SINE MIR 173 262 0 725 233 121 82 chr11 126593518 126593983 -22189489 + MLT1J LTR MaLR 6 444 -2 3211 183 20 45 chr11 126594605 126595300 -22188172 + L1MD3 LINE L1 7318 7995 0 589 250 156 5 chr11 126595875 126596067 -22187405 + MIR SINE MIR 24 244 -18 349 312 7 36 chr11 126596127 126596265 -22187207 + MIR SINE MIR 16 149 -59 203 294 0 0 chr11 126596324 126596375 -22187097 + C-rich Low_complexity Low_complexity 1 51 0 408 312 79 31 chr11 126597177 126597349 -22186123 - MIR3 SINE MIR -61 147 3 805 189 19 0 chr11 126597753 126598015 -22185457 + CT-rich Low_complexity Low_complexity 1 267 0 238 299 0 13 chr11 126599140 126599217 -22184255 + MIR SINE MIR 76 151 -57 2520 143 30 37 chr11 126599633 126600068 -22183404 - Tigger2a DNA MER2_type -1 433 2 273 57 0 0 chr11 126600069 126600104 -22183368 + (TG)n Simple_repeat Simple_repeat 2 36 0 334 303 173 0 chr11 126600313 126600475 -22182997 - MIR SINE MIR 0 262 73 394 269 103 34 chr11 126603544 126603719 -22179753 - MIR SINE MIR -56 206 20 271 310 160 0 chr11 126603781 126603881 -22179591 - L2 LINE L2 -10 3262 3147 1693 121 72 75 chr11 126604489 126604795 -22178677 - MER1B DNA MER1_type 0 339 35 267 346 9 9 chr11 126605312 126605419 -22178053 - MIR3 SINE MIR -53 155 49 280 337 41 0 chr11 126606218 126606316 -22177156 + MIR SINE MIR 44 145 -63 652 66 38 85 chr11 126606486 126606592 -22176880 + MER30 DNA MER1_type 2 102 -128 45115 38 1 5 chr11 126606594 126612777 -22170695 + L1PA4 LINE L1 1 6155 0 21 0 0 0 chr11 126612777 126612798 -22170674 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr11 126612831 126612857 -22170615 + AT_rich Low_complexity Low_complexity 1 26 0 753 156 0 0 chr11 126612870 126612979 -22170493 + MER30 DNA MER1_type 122 230 0 286 303 46 9 chr11 126614146 126614255 -22169217 - MIR SINE MIR -142 120 8 209 179 0 0 chr11 126614255 126614294 -22169178 + (CAT)n Simple_repeat Simple_repeat 3 41 0 186 182 0 0 chr11 126614479 126614512 -22168960 + MIR SINE MIR 116 148 -60 351 0 0 0 chr11 126615496 126615535 -22167937 + (TG)n Simple_repeat Simple_repeat 1 39 0 262 242 84 32 chr11 126615859 126615954 -22167518 - MIR SINE MIR -74 188 89 181 154 0 26 chr11 126616229 126616268 -22167204 - L2 LINE L2 -28 3244 3207 216 290 14 0 chr11 126616298 126616367 -22167105 - MIR SINE MIR -147 115 46 511 268 98 6 chr11 126616684 126616867 -22166605 - MIR SINE MIR -13 249 50 905 285 8 0 chr11 126617138 126617387 -22166085 + MIR SINE MIR 12 262 0 184 303 15 61 chr11 126617408 126617474 -22165998 - L3 LINE CR1 -1 1576 1514 415 291 0 70 chr11 126617491 126617663 -22165809 + MIR SINE MIR 32 191 -71 2289 213 48 38 chr11 126619078 126619678 -22163794 - L1ME3 LINE L1 -1 6161 5556 296 316 44 0 chr11 126619697 126619811 -22163661 - L2 LINE L2 -5 3267 3149 276 275 25 12 chr11 126621054 126621134 -22162338 + MIR3 SINE MIR 91 171 -37 23 0 0 0 chr11 126621257 126621280 -22162192 + AT_rich Low_complexity Low_complexity 1 23 0 249 383 9 0 chr11 126621313 126621420 -22162052 - L2 LINE L2 -1 3312 3205 204 40 0 0 chr11 126624181 126624206 -22159266 + (TTG)n Simple_repeat Simple_repeat 2 26 0 251 306 145 37 chr11 126624612 126624729 -22158743 + MIR SINE MIR 22 125 -137 1729 207 22 3 chr11 126624729 126625087 -22158385 + MLT1A1 LTR MaLR 1 365 0 251 306 145 37 chr11 126625087 126625179 -22158293 + MIR SINE MIR 125 249 -13 494 234 107 42 chr11 126625559 126625849 -22157623 - MLT1I LTR MaLR 0 549 80 2140 118 3 0 chr11 126625901 126626198 -22157274 - AluSc SINE Alu -11 298 1 357 272 20 62 chr11 126627974 126628143 -22155329 - MIR SINE MIR -61 147 27 1774 165 43 13 chr11 126628265 126628568 -22154904 - AluSx SINE Alu 0 312 1 325 322 132 6 chr11 126630459 126630633 -22152839 - MER102a DNA MER1_type -8 322 127 2300 92 0 0 chr11 126630644 126630939 -22152533 - AluSg1 SINE Alu -14 295 1 315 172 0 0 chr11 126631667 126631725 -22151747 - MLT1K LTR MaLR -14 574 517 318 252 60 80 chr11 126632300 126632451 -22151021 - MIR SINE MIR -66 196 49 374 292 131 15 chr11 126633854 126633991 -22149481 - L2 LINE L2 -3 3269 3117 490 293 134 40 chr11 126634037 126634358 -22149114 - L2 LINE L2 0 3313 2963 908 228 15 0 chr11 126634363 126634565 -22148907 + MER63A DNA MER1_type 1 205 -5 372 43 0 0 chr11 126634858 126634904 -22148568 + (TG)n Simple_repeat Simple_repeat 1 46 0 232 290 58 0 chr11 126634918 126634987 -22148485 - L2 LINE L2 -57 3256 3184 648 286 182 42 chr11 126636981 126637338 -22146134 - L3 LINE CR1 -62 1515 1109 193 374 52 22 chr11 126637404 126637634 -22145838 + L2 LINE L2 2624 2860 -454 394 350 24 105 chr11 126637659 126638031 -22145441 - L2 LINE L2 0 3272 2931 617 267 27 16 chr11 126638109 126638296 -22145176 + MER63A DNA MER1_type 1 189 -21 508 243 27 65 chr11 126638503 126638688 -22144784 - MER5B DNA MER1_type 0 178 1 180 293 0 35 chr11 126638886 126638944 -22144528 + MIR SINE MIR 24 79 -183 934 244 45 12 chr11 126639096 126639338 -22144134 - MIR SINE MIR -1 261 12 429 319 101 77 chr11 126639397 126639852 -22143620 - L2 LINE L2 -815 2499 2023 3058 221 80 29 chr11 126639852 126640673 -22142799 - MER21B LTR ERV1 0 863 1 429 319 101 77 chr11 126640673 126640851 -22142621 - L2 LINE L2 -1291 2023 1851 247 374 90 37 chr11 126641281 126641682 -22141790 - L2 LINE L2 -1967 1347 926 3319 243 62 18 chr11 126642751 126644405 -22139067 - L1ME1 LINE L1 -305 5861 4158 807 159 0 0 chr11 126644429 126644574 -22138898 - L1MB5 LINE L1 -1 6173 6029 41582 43 4 1 chr11 126644588 126650717 -22132755 + L1PA4 LINE L1 12 6155 0 2896 198 34 26 chr11 126650745 126651401 -22132071 - L1MB5 LINE L1 -141 6033 5373 4409 168 53 16 chr11 126651425 126652343 -22131129 - L1MA9 LINE L1 -4 6308 5357 911 256 82 22 chr11 126652353 126652709 -22130763 - L1ME1 LINE L1 -4 6162 5786 25 0 0 0 chr11 126652731 126652756 -22130716 + AT_rich Low_complexity Low_complexity 1 25 0 1319 204 22 0 chr11 126652756 126653159 -22130313 - L1MA9 LINE L1 -22 7709 7202 250 121 71 10 chr11 126653167 126653266 -22130206 + (TA)n Simple_repeat Simple_repeat 1 105 0 11743 212 33 29 chr11 126653278 126657517 -22125955 - L1MA9 LINE L1 -521 7210 2934 2032 211 52 40 chr11 126657534 126658127 -22125345 - L1MA9 LINE L1 -44 6268 5669 1725 125 7 25 chr11 126658129 126658409 -22125063 - MSTA LTR MaLR 0 428 154 1058 228 69 7 chr11 126658569 126658884 -22124588 - MLT1F1 LTR MaLR 0 567 197 432 0 0 0 chr11 126658884 126658932 -22124540 + (TG)n Simple_repeat Simple_repeat 2 49 0 1058 228 69 7 chr11 126658932 126658943 -22124529 - MLT1F1 LTR MaLR -370 197 188 282 206 402 0 chr11 126659047 126659144 -22124328 - MLT1F1 LTR MaLR -406 136 1 3078 264 95 17 chr11 126659147 126661243 -22122229 - L1MEd LINE L1 -1476 4906 2650 685 311 62 9 chr11 126661251 126661573 -22121899 - L1MEc LINE L1 -5965 431 93 32 0 0 0 chr11 126662300 126662332 -22121140 + AT_rich Low_complexity Low_complexity 1 32 0 422 279 21 12 chr11 126662400 126662597 -22120875 - L1MEd LINE L1 -854 1889 1575 417 311 170 4 chr11 126662615 126662856 -22120616 - HAL1 LINE L1 -1062 1445 1165 444 165 114 10 chr11 126662856 126662968 -22120504 + MSTD LTR MaLR 1 128 -246 2986 236 78 11 chr11 126662972 126663923 -22119549 + L1PB1 LINE L1 31 1045 -5818 229 139 0 0 chr11 126663927 126663963 -22119509 + L1PB1 LINE L1 1093 1128 -5735 13126 195 26 12 chr11 126663970 126669415 -22114057 + L1PB1 LINE L1 1311 6864 -3 1467 228 10 6 chr11 126669454 126669765 -22113707 + MSTD LTR MaLR 85 396 0 778 323 18 41 chr11 126669978 126670545 -22112927 - L1MEd LINE L1 -5281 1091 538 434 355 23 42 chr11 126671465 126671775 -22111697 - L2 LINE L2 -2707 607 304 2225 120 0 3 chr11 126671777 126672076 -22111396 - AluSx SINE Alu -12 300 3 215 263 18 0 chr11 126672371 126672428 -22111044 + L2 LINE L2 3005 3062 -251 383 285 248 0 chr11 126673033 126673170 -22110302 + L2 LINE L2 3102 3272 0 224 232 18 0 chr11 126673629 126673685 -22109787 + (CA)n Simple_repeat Simple_repeat 2 58 0 651 321 90 35 chr11 126674140 126674543 -22108929 - L2 LINE L2 -1 3312 2932 228 67 0 0 chr11 126674543 126674573 -22108899 + (CG)n Simple_repeat Simple_repeat 2 31 0 * 405 0 0 0 chr11 126674572 126674617 -22108855 + (CA)n Simple_repeat Simple_repeat 1 45 0 651 321 90 35 chr11 126674573 126674778 -22108694 - L2 LINE L2 -381 2932 2716 408 293 0 0 chr11 126675249 126675348 -22108124 - MIR3 SINE MIR -27 181 83 259 330 10 10 chr11 126676426 126676526 -22106946 + L3b LINE CR1 1296 1395 -188 182 330 0 66 chr11 126677269 126677360 -22106112 + MIR SINE MIR 98 182 -80 279 309 214 16 chr11 126677915 126678041 -22105431 - MER5B DNA MER1_type -23 155 5 292 214 0 0 chr11 126678103 126678159 -22105313 + L2 LINE L2 3258 3313 0 353 295 67 57 chr11 126678441 126678634 -22104838 - MIR SINE MIR -56 206 12 201 238 0 0 chr11 126679709 126679751 -22103721 + C-rich Low_complexity Low_complexity 5 46 0 234 221 104 0 chr11 126680485 126680562 -22102910 - MIR SINE MIR -78 130 46 1349 171 57 3 chr11 126680628 126680926 -22102546 - MER33 DNA MER1_type 0 324 11 192 77 0 0 chr11 126681813 126681839 -22101633 + (T)n Simple_repeat Simple_repeat 1 26 0 1340 161 86 105 chr11 126682832 126682977 -22100495 + MLT1A1 LTR MaLR 1 147 -218 1840 123 7 20 chr11 126682977 126683277 -22100195 + AluSx SINE Alu 17 312 0 1340 161 86 105 chr11 126683277 126683503 -22099969 + MLT1A1 LTR MaLR 147 365 0 1379 246 60 14 chr11 126683833 126684182 -22099290 - MLT1A1 LTR MaLR 0 365 1 222 37 0 0 chr11 126684480 126684507 -22098965 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 382 339 30 12 chr11 126685340 126685505 -22097967 + L2 LINE L2 2878 3045 -268 366 323 56 30 chr11 126686283 126686460 -22097012 - MIR SINE MIR 0 262 76 2201 110 0 0 chr11 126686460 126686759 -22096713 + AluSx SINE Alu 1 299 -13 366 323 56 30 chr11 126686759 126686813 -22096659 - MIR SINE MIR -186 76 25 190 347 13 13 chr11 126686969 126687044 -22096428 - MIR SINE MIR -32 230 156 22 0 0 0 chr11 126687223 126687245 -22096227 + AT_rich Low_complexity Low_complexity 1 22 0 783 311 46 0 chr11 126687346 126687587 -22095885 + MIR SINE MIR 7 258 -4 197 269 173 0 chr11 126687611 126687663 -22095809 - L2 LINE L2 -20 3293 3233 2189 104 0 0 chr11 126688343 126688650 -22094822 + AluSx SINE Alu 1 307 -5 371 263 135 23 chr11 126689918 126690144 -22093328 + MIR SINE MIR 8 257 -5 354 197 15 0 chr11 126690490 126690556 -22092916 + MER5A DNA MER1_type 18 84 -105 203 380 14 0 chr11 126690995 126691066 -22092406 - MIR SINE MIR -92 116 45 434 299 95 7 chr11 126691837 126691984 -22091488 + MIR3 SINE MIR 15 174 -34 525 223 146 50 chr11 126692365 126692625 -22090847 + MLT1H LTR MaLR 263 547 -2 228 375 58 8 chr11 126694564 126694684 -22088788 + MIR SINE MIR 16 142 -66 22 0 0 0 chr11 126694688 126694710 -22088762 + AT_rich Low_complexity Low_complexity 1 22 0 300 256 0 47 chr11 126694728 126694814 -22088658 + MIR3 SINE MIR 115 196 -12 528 283 35 0 chr11 126695218 126695363 -22088109 + L3 LINE CR1 1080 1229 -348 345 250 31 0 chr11 126695419 126695515 -22087957 + L3 LINE CR1 1390 1488 -89 190 231 0 0 chr11 126695539 126695578 -22087894 - L2 LINE L2 -8 3305 3267 222 330 75 0 chr11 126696037 126696143 -22087329 - L2 LINE L2 -40 3232 3119 5455 152 38 6 chr11 126696399 126697763 -22085709 + L1PA13 LINE L1 4736 6145 -18 782 147 37 6 chr11 126697837 126698000 -22085472 + L1M1 LINE L1 2468 2635 -4930 468 329 59 72 chr11 126698127 126698583 -22084889 + L2 LINE L2 2814 3263 -9 861 277 72 68 chr11 126698951 126699591 -22083881 + L1M4 LINE L1 4487 5134 -1012 904 217 36 23 chr11 126699591 126699812 -22083660 + MER58A DNA MER1_type 1 224 0 861 277 72 68 chr11 126699812 126700084 -22083388 + L1M4 LINE L1 5134 5403 -743 724 241 75 35 chr11 126700288 126700686 -22082786 + L1ME LINE L1 2201 2614 -3532 746 251 169 4 chr11 126700755 126700998 -22082474 - LTR33 LTR ERVL -238 283 1 590 232 154 19 chr11 126700999 126701264 -22082208 + L1ME LINE L1 5402 5700 -462 198 0 0 0 chr11 126701621 126701643 -22081829 + (A)n Simple_repeat Simple_repeat 1 22 0 252 0 0 0 chr11 126701672 126701700 -22081772 + (A)n Simple_repeat Simple_repeat 1 28 0 290 83 0 67 chr11 126702533 126702593 -22080879 + (T)n Simple_repeat Simple_repeat 1 56 0 229 371 59 0 chr11 126702593 126702763 -22080709 - L2 LINE L2 -575 2739 2560 527 307 176 0 chr11 126702788 126702993 -22080479 + MIR SINE MIR 15 255 -7 398 257 43 57 chr11 126703406 126703546 -22079926 + MIR SINE MIR 20 157 -105 331 263 152 10 chr11 126704288 126704387 -22079085 - MER81 DNA DNA -1 113 1 333 304 74 27 chr11 126705631 126705779 -22077693 + L3b LINE CR1 1289 1443 -140 2517 191 15 4 chr11 126705923 126706385 -22077087 - MLT1C LTR MaLR 0 467 1 322 290 130 19 chr11 126706910 126707072 -22076400 - MIR3 SINE MIR -5 203 24 206 246 0 18 chr11 126707109 126707166 -22076306 - L2 LINE L2 -75 3238 3183 457 293 11 55 chr11 126709360 126709541 -22073931 + MIR SINE MIR 20 192 -70 1048 116 7 0 chr11 126709844 126709999 -22073473 - AluSg/x SINE Alu -8 304 149 364 257 0 48 chr11 126710099 126710204 -22073268 + MIR SINE MIR 163 262 0 708 254 17 6 chr11 126710736 126710909 -22072563 - MIR SINE MIR 0 262 88 287 215 226 11 chr11 126711134 126711227 -22072245 - MIR SINE MIR -77 131 19 23 0 0 0 chr11 126712106 126712129 -22071343 + AT_rich Low_complexity Low_complexity 1 23 0 291 314 153 16 chr11 126713200 126713324 -22070148 - L2 LINE L2 -25 3247 3107 2098 100 34 0 chr11 126713908 126714199 -22069273 + AluY SINE Alu 1 301 -10 791 219 148 0 chr11 126714226 126714409 -22069063 + MER58A DNA MER1_type 12 221 -3 562 282 59 35 chr11 126714524 126714726 -22068746 - L2 LINE L2 -1 3312 3106 447 324 142 20 chr11 126714701 126715047 -22068425 + L3 LINE CR1 1175 1562 -15 * 246 116 0 0 chr11 126716813 126716856 -22066616 + (TG)n Simple_repeat Simple_repeat 1 43 0 220 194 208 0 chr11 126716988 126717079 -22066393 + MIR SINE MIR 28 137 -71 1067 239 5 5 chr11 126717250 126717468 -22066004 - MIR SINE MIR 0 262 45 203 265 176 29 chr11 126717768 126717870 -22065602 - L2 LINE L2 -5 3308 3192 792 274 79 70 chr11 126717937 126718368 -22065104 - MLT1J1 LTR MaLR 0 446 12 2332 96 54 25 chr11 126718496 126718850 -22064622 - THE1B LTR MaLR 0 364 1 814 122 0 0 chr11 126719348 126719463 -22064009 - FLAM_C SINE Alu -18 115 1 209 252 225 0 chr11 126719478 126719589 -22063883 - MIR SINE MIR -80 182 47 332 257 20 112 chr11 126720144 126720296 -22063176 - MIR3 SINE MIR 0 208 71 400 208 31 21 chr11 126720476 126720572 -22062900 + MIR3 SINE MIR 79 175 -33 2796 165 70 30 chr11 126720694 126720819 -22062653 - Zaphod DNA AcHobo 0 4031 3912 2074 194 6 6 chr11 126720819 126721184 -22062288 + MLT1A1 LTR MaLR 1 365 0 2796 165 70 30 chr11 126721184 126721714 -22061758 - Zaphod DNA AcHobo -119 3912 3350 2714 215 63 36 chr11 126721727 126722388 -22061084 - Zaphod DNA AcHobo -3349 682 4 2842 85 0 3 chr11 126722625 126722990 -22060482 - THE1C LTR MaLR -11 364 1 423 319 65 0 chr11 126724168 126724306 -22059166 + L2 LINE L2 3126 3272 0 189 121 0 0 chr11 126724364 126724397 -22059075 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 310 370 8 8 chr11 126726366 126726485 -22056987 - MIR SINE MIR -65 143 25 318 106 0 0 chr11 126726621 126726668 -22056804 + (T)n Simple_repeat Simple_repeat 1 47 0 2138 166 29 7 chr11 126727930 126728351 -22055121 - L1MB8 LINE L1 0 6178 5749 181 224 118 59 chr11 126728980 126729065 -22054407 - MIR3 SINE MIR -28 180 91 1325 214 153 39 chr11 126729173 126729631 -22053841 - MLT1H LTR MaLR -28 521 12 225 125 0 0 chr11 126729633 126729665 -22053807 - MIR SINE MIR -140 68 37 396 0 0 0 chr11 126730978 126731022 -22052450 + (TG)n Simple_repeat Simple_repeat 1 44 0 366 223 80 18 chr11 126731066 126731178 -22052294 - MIR3 SINE MIR -6 202 84 22 0 0 0 chr11 126731639 126731661 -22051811 + AT_rich Low_complexity Low_complexity 1 22 0 432 215 190 49 chr11 126731930 126732093 -22051379 + MIR3 SINE MIR 1 186 -22 447 230 40 0 chr11 126732135 126732235 -22051237 + MIR SINE MIR 151 254 -8 478 289 64 34 chr11 126732306 126732510 -22050962 + MER63A DNA MER1_type 1 210 0 379 310 21 7 chr11 126733485 126733630 -22049842 + L2 LINE L2 2828 2974 -298 1350 187 45 142 chr11 126733980 126734623 -22048849 + HAL1 LINE L1 782 1362 -1145 247 269 235 15 chr11 126734839 126735099 -22048373 + HAL1 LINE L1 1998 2314 -193 436 248 10 73 chr11 126735122 126735328 -22048144 + L1ME2 LINE L1 5970 6162 -2 264 249 12 135 chr11 126735357 126735527 -22047945 + L1MC4 LINE L1 7826 7959 -83 2023 123 20 0 chr11 126735527 126735827 -22047645 + AluSx SINE Alu 1 306 -6 264 249 12 135 chr11 126735827 126735901 -22047571 + L1MC4 LINE L1 7959 8040 -2 254 272 109 41 chr11 126735947 126736094 -22047378 + HAL1 LINE L1 2347 2503 -4 345 24 0 0 chr11 126736377 126736419 -22047053 + (GGA)n Simple_repeat Simple_repeat 2 43 0 518 270 24 0 chr11 126737752 126737878 -22045594 + MIR3 SINE MIR 12 140 -68 289 340 89 42 chr11 126737907 126738098 -22045374 - L2 LINE L2 0 3272 3073 315 225 42 33 chr11 126739390 126739510 -22043962 + HAL1 LINE L1 837 957 -1550 837 258 20 30 chr11 126739662 126739860 -22043612 + MIR SINE MIR 16 211 -51 318 50 0 0 chr11 126739977 126740017 -22043455 + (TGAA)n Simple_repeat Simple_repeat 2 41 0 376 305 21 0 chr11 126740459 126740554 -22042918 - MIR3 SINE MIR -21 187 91 197 359 75 0 chr11 126740815 126740921 -22042551 - MIR SINE MIR -75 133 20 272 333 39 0 chr11 126741906 126742008 -22041464 + MIR3 SINE MIR 99 204 -4 359 244 30 35 chr11 126742092 126742289 -22041183 - L1ME4a LINE L1 -6 6115 5920 749 301 93 45 chr11 126742420 126743022 -22040450 + L1ME4a LINE L1 5348 5978 -143 935 53 15 15 chr11 126743544 126743675 -22039797 + BC200 scRNA scRNA 1 131 -69 1879 214 45 5 chr11 126743927 126744367 -22039105 - L1MB3 LINE L1 -3 6180 5723 357 315 17 61 chr11 126744527 126744708 -22038764 + MIR SINE MIR 20 192 -70 2116 114 3 3 chr11 126745012 126745318 -22038154 - AluSx SINE Alu -6 306 1 982 228 82 82 chr11 126745474 126745829 -22037643 - MLT1B LTR MaLR 0 390 33 2222 67 35 0 chr11 126745829 126746114 -22037358 + AluY SINE Alu 1 295 -16 982 228 82 82 chr11 126746114 126746148 -22037324 - MLT1B LTR MaLR -356 34 1 324 269 14 103 chr11 126746707 126746824 -22036648 + L2 LINE L2 3121 3224 -48 497 221 18 9 chr11 126746824 126746937 -22036535 + MER81 DNA DNA 1 114 0 324 269 14 103 chr11 126746937 126746964 -22036508 + L2 LINE L2 3224 3252 -20 453 291 22 11 chr11 126747633 126747815 -22035657 - L1ME4a LINE L1 -343 5778 5595 532 322 42 70 chr11 126747816 126748376 -22035096 - L2 LINE L2 0 3272 2731 387 372 96 15 chr11 126748936 126749331 -22034141 + L2 LINE L2 2838 3264 -8 200 204 0 23 chr11 126749992 126750036 -22033436 + GA-rich Low_complexity Low_complexity 2 44 0 471 243 66 62 chr11 126750866 126751092 -22032380 + L2 LINE L2 2827 3053 -219 204 40 0 0 chr11 126751154 126751179 -22032293 + (TG)n Simple_repeat Simple_repeat 1 25 0 * 366 23 0 0 chr11 126751178 126751221 -22032251 + (GA)n Simple_repeat Simple_repeat 1 43 0 628 254 76 25 chr11 126751820 126752056 -22031416 + L2 LINE L2 2996 3243 -70 432 238 16 8 chr11 126752084 126752206 -22031266 + LTR33 LTR ERVL 23 145 -376 251 167 50 0 chr11 126752378 126752438 -22031034 + LTR33 LTR ERVL 394 456 -65 207 385 52 22 chr11 126752629 126752764 -22030708 - L3b LINE CR1 -68 1515 1377 191 304 170 18 chr11 126752966 126753078 -22030394 + MIR SINE MIR 21 149 -59 386 271 131 90 chr11 126754295 126754638 -22028834 - L2 LINE L2 -1 3271 2915 923 231 125 54 chr11 126754639 126755024 -22028448 + L1ME1 LINE L1 5746 6114 -52 271 342 53 27 chr11 126755162 126755387 -22028085 - L2 LINE L2 -520 2794 2564 412 153 24 0 chr11 126756215 126756300 -22027172 + GA-rich Low_complexity Low_complexity 3 89 0 21 0 0 0 chr11 126756630 126756651 -22026821 + AT_rich Low_complexity Low_complexity 1 21 0 823 134 0 8 chr11 126756820 126756954 -22026518 + FLAM_C SINE Alu 1 133 0 878 282 116 29 chr11 126756958 126757197 -22026275 + L2 LINE L2 2445 2662 -651 1984 184 48 9 chr11 126757197 126757637 -22025835 - L1MB4 LINE L1 -1 6179 5723 878 282 116 29 chr11 126757637 126758157 -22025315 + L2 LINE L2 2662 3277 -36 710 133 260 0 chr11 126758361 126758511 -22024961 - MER5A DNA MER1_type 0 189 1 269 345 153 16 chr11 126758666 126758973 -22024499 + L2 LINE L2 1932 2280 -1034 238 272 88 61 chr11 126758856 126759003 -22024469 - L3 LINE CR1 -345 1232 1082 * 342 333 70 0 chr11 126759027 126759138 -22024334 + MIR SINE MIR 96 223 -39 2104 113 3 0 chr11 126759138 126759431 -22024041 + AluSx SINE Alu 1 294 -18 342 333 70 0 chr11 126759431 126759475 -22023997 + MIR SINE MIR 223 262 0 285 309 37 0 chr11 126759514 126759595 -22023877 + L2 LINE L2 3230 3313 0 186 328 58 40 chr11 126759588 126759762 -22023710 + L2 LINE L2 2322 2498 -816 * 240 275 25 12 chr11 126760781 126760861 -22022611 + T-rich Low_complexity Low_complexity 4 84 0 890 200 45 10 chr11 126762181 126762381 -22021091 - MER63A DNA MER1_type 0 210 4 357 262 37 56 chr11 126762383 126762490 -22020982 - MIR SINE MIR -70 138 34 294 289 197 26 chr11 126763739 126763891 -22019581 - MIR SINE MIR 0 262 85 282 350 22 15 chr11 126763963 126764100 -22019372 + MER5A DNA MER1_type 46 183 -6 267 336 84 8 chr11 126764142 126764261 -22019211 + L2 LINE L2 3142 3269 -3 310 273 107 0 chr11 126764777 126764898 -22018574 + MER103 DNA DNA 17 150 -16 350 204 11 68 chr11 126765005 126765093 -22018379 - MIR3 SINE MIR -54 154 72 235 275 50 12 chr11 126765355 126765435 -22018037 + CT-rich Low_complexity Low_complexity 1 83 0 277 301 15 44 chr11 126765503 126765632 -22017840 - MIR SINE MIR -78 130 1 215 233 27 27 chr11 126765990 126766063 -22017409 + GA-rich Low_complexity Low_complexity 5 77 0 514 272 0 32 chr11 126766216 126766341 -22017131 + L2 LINE L2 3193 3313 0 190 264 38 0 chr11 126766543 126766596 -22016876 - MIR SINE MIR -53 209 155 320 271 186 14 chr11 126767379 126767519 -22015953 - MIR SINE MIR -97 165 2 579 197 87 95 chr11 126768463 126768727 -22014745 - LTR16A1 LTR ERVL -18 439 178 287 290 37 9 chr11 126768992 126769099 -22014373 - ERVL LTR ERVL -414 5350 5241 3234 288 77 51 chr11 126769120 126770169 -22013303 - ERVL LTR ERVL -1942 3054 2033 181 143 0 0 chr11 126770169 126770197 -22013275 + MER5A DNA MER1_type 33 60 -129 3234 288 77 51 chr11 126770197 126770492 -22012980 - ERVL LTR ERVL -2963 2033 1747 369 0 0 0 chr11 126770492 126770533 -22012939 + (CA)n Simple_repeat Simple_repeat 2 42 0 3234 288 77 51 chr11 126770533 126770750 -22012722 - ERVL LTR ERVL -3249 1747 1360 2226 297 61 25 chr11 126770776 126771666 -22011806 - ERVL LTR ERVL -3688 1308 387 1861 161 62 35 chr11 126771794 126772167 -22011305 + MLT1B LTR MaLR 1 383 -7 213 65 0 0 chr11 126772345 126772376 -22011096 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1149 262 43 60 chr11 126772400 126772502 -22010970 - LTR16A1 LTR ERVL 0 457 355 2436 116 5 27 chr11 126772502 126772874 -22010598 - THE1B LTR MaLR 0 364 1 1149 262 43 60 chr11 126772874 126773236 -22010236 - LTR16A1 LTR ERVL -102 355 1 300 182 34 0 chr11 126773267 126773355 -22010117 + (TAGA)n Simple_repeat Simple_repeat 3 93 0 1282 267 28 6 chr11 126773548 126773934 -22009538 - LTR16A LTR ERVL 0 450 7 209 247 54 11 chr11 126773942 126774035 -22009437 - L2 LINE L2 -198 3074 2978 189 191 149 0 chr11 126775217 126775264 -22008208 - L2 LINE L2 -4 3309 3256 391 292 18 0 chr11 126776187 126776300 -22007172 - MER94 DNA DNA -3 131 17 522 199 84 30 chr11 126776309 126776440 -22007032 - MER117 DNA MER1_type -58 139 2 367 333 23 0 chr11 126776467 126776596 -22006876 + MIR SINE MIR 75 206 -56 224 278 0 0 chr11 126777965 126778019 -22005453 + L2 LINE L2 3188 3241 -31 540 272 35 6 chr11 126778020 126778193 -22005279 - MER5B DNA MER1_type 0 178 1 2038 142 32 0 chr11 126778239 126778555 -22004917 + THE1B LTR MaLR 1 326 -38 282 122 0 0 chr11 126778751 126778792 -22004680 + THE1B LTR MaLR 324 364 0 204 40 0 0 chr11 126779623 126779648 -22003824 + (TC)n Simple_repeat Simple_repeat 1 25 0 222 254 34 0 chr11 126780006 126780065 -22003407 + CT-rich Low_complexity Low_complexity 4 64 0 2895 175 117 13 chr11 126781301 126781404 -22002068 - Charlie1a DNA MER1_type -1322 1439 1348 1848 124 4 0 chr11 126781404 126781671 -22001801 + AluSx SINE Alu 1 268 -44 2895 175 117 13 chr11 126781671 126782251 -22001221 - Charlie1a DNA MER1_type -1413 1348 685 277 242 30 0 chr11 126782267 126782333 -22001139 - LTR41 LTR ERVL -203 570 503 618 214 151 0 chr11 126782904 126783063 -22000409 + LTR41 LTR ERVL 1 183 -590 278 223 161 27 chr11 126783515 126783626 -21999846 + LTR50 LTR ERVL 650 795 0 2675 211 51 34 chr11 126783630 126784275 -21999197 - Charlie1a DNA MER1_type -788 667 12 727 284 51 5 chr11 126784296 126784504 -21998968 + MIR SINE MIR 34 248 -14 438 308 151 0 chr11 126785283 126785442 -21998030 - MIR SINE MIR -4 258 76 253 340 78 0 chr11 126785969 126786072 -21997400 + L2 LINE L2 3162 3272 0 1484 112 43 0 chr11 126787148 126787380 -21996092 - L1MA5A LINE L1 0 6297 6056 197 333 72 82 chr11 126787635 126787842 -21995630 + L2 LINE L2 3109 3313 0 188 415 0 8 chr11 126787920 126788043 -21995429 + L3 LINE CR1 1309 1430 -147 453 316 13 7 chr11 126788078 126788230 -21995242 - MIR SINE MIR -60 202 50 2311 179 144 6 chr11 126788595 126789082 -21994390 + MER77 LTR ERV1 48 601 -4 597 251 180 16 chr11 126790971 126791226 -21992246 - MLT1I LTR MaLR -39 370 74 238 194 97 0 chr11 126791391 126791453 -21992019 - MIR SINE MIR -60 148 81 186 281 16 78 chr11 126792215 126792279 -21991193 - L2 LINE L2 0 3272 3213 241 274 0 20 chr11 126792292 126792343 -21991129 + Zaphod DNA AcHobo 10 59 -3972 270 318 0 0 chr11 126792704 126792767 -21990705 - L2 LINE L2 -54 3218 3156 296 275 0 0 chr11 126792838 126792907 -21990565 - MIR SINE MIR -88 174 106 462 242 11 93 chr11 126793071 126793253 -21990219 - MLT1K LTR MaLR -25 563 397 1687 264 113 4 chr11 126793255 126793815 -21989657 - L1ME3 LINE L1 -6 6156 5536 1386 260 6 36 chr11 126793813 126794317 -21989155 - L1ME3 LINE L1 -822 5324 4836 * 1002 257 130 21 chr11 126794326 126794664 -21988808 - MLT1K LTR MaLR -185 403 29 183 323 0 0 chr11 126795797 126795859 -21987613 + MIR SINE MIR 68 129 -79 301 333 20 20 chr11 126796550 126796703 -21986769 + CT-rich Low_complexity Low_complexity 1 153 0 199 150 33 0 chr11 126797170 126797230 -21986242 + (CTATA)n Simple_repeat Simple_repeat 4 65 0 240 150 38 0 chr11 126797349 126797429 -21986043 + (TATAG)n Simple_repeat Simple_repeat 3 85 0 239 260 90 82 chr11 126797566 126797751 -21985721 + L1MC4a LINE L1 4747 4929 -1217 1233 173 131 0 chr11 126797751 126798034 -21985438 + MER33 DNA MER1_type 1 320 -4 239 260 90 82 chr11 126798034 126798436 -21985036 + L1MC4a LINE L1 4929 5339 -807 270 163 102 71 chr11 126798478 126798576 -21984896 + L1MC5 LINE L1 7811 7911 -50 709 256 141 46 chr11 126798597 126799190 -21984282 + L1MC4a LINE L1 5377 6025 -96 4462 161 21 9 chr11 126799275 126800065 -21983407 + L1MB3 LINE L1 5384 6183 0 235 286 43 0 chr11 126800109 126800179 -21983293 - MIR3 SINE MIR -39 169 97 1083 270 92 47 chr11 126800180 126800688 -21982784 - MLT1H1 LTR MaLR -15 540 10 180 313 12 0 chr11 126801876 126801959 -21981513 - L3b LINE CR1 -192 1391 1308 186 133 0 0 chr11 126802871 126802901 -21980571 + (CA)n Simple_repeat Simple_repeat 2 31 0 261 279 178 8 chr11 126803457 126803586 -21979886 + MIR3 SINE MIR 37 187 -21 198 0 0 0 chr11 126804881 126804903 -21978569 + (TG)n Simple_repeat Simple_repeat 1 22 0 * 315 0 0 0 chr11 126804902 126804937 -21978535 + (GA)n Simple_repeat Simple_repeat 1 35 0 340 313 11 66 chr11 126806356 126806538 -21976934 + MER5A DNA MER1_type 18 189 0 1191 83 6 0 chr11 126808332 126808682 -21974790 + (TC)n Simple_repeat Simple_repeat 1 352 0 680 304 91 12 chr11 126808806 126809049 -21974423 + MIR SINE MIR 1 262 0 247 326 61 0 chr11 126809406 126809504 -21973968 - L2 LINE L2 -1 3271 3168 327 311 59 25 chr11 126811402 126811521 -21971951 + L2 LINE L2 3146 3268 -4 218 356 186 0 chr11 126811571 126811748 -21971724 - MIR SINE MIR -27 235 26 410 317 75 45 chr11 126811787 126812055 -21971417 + MLT1K LTR MaLR 11 286 -302 229 314 16 32 chr11 126812373 126812497 -21970975 + MLT2E LTR ERVL 505 626 -2 485 226 79 55 chr11 126812583 126812747 -21970725 + MLT1K LTR MaLR 374 541 -47 333 245 137 0 chr11 126813349 126813451 -21970021 + MIR SINE MIR 72 187 -75 218 125 0 0 chr11 126813520 126813552 -21969920 - MIR SINE MIR -12 250 219 1390 194 45 112 chr11 126813652 126814143 -21969329 + MER39 LTR ERV1 250 707 0 300 304 113 9 chr11 126814151 126814266 -21969206 - MIR SINE MIR -124 138 12 264 30 0 0 chr11 126814641 126814674 -21968798 + (TG)n Simple_repeat Simple_repeat 1 33 0 273 348 33 50 chr11 126815410 126815591 -21967881 - MIR SINE MIR -6 256 79 237 359 47 0 chr11 126815703 126815809 -21967663 - L2 LINE L2 -193 3079 2969 180 152 0 0 chr11 126816734 126816767 -21966705 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 202 270 36 88 chr11 126816770 126816907 -21966565 + L3 LINE CR1 301 430 -1147 326 339 48 30 chr11 126817647 126817815 -21965657 + MIR3 SINE MIR 10 180 -28 333 250 34 108 chr11 126818054 126818258 -21965214 + L2 LINE L2 2985 3173 -140 2232 186 51 48 chr11 126818272 126818746 -21964726 - MLT1D LTR MaLR -2 503 29 3226 249 91 25 chr11 126819239 126820496 -21962976 + L1MEc LINE L1 754 2107 -4289 1918 128 3 7 chr11 126820496 126820800 -21962672 + AluSx SINE Alu 1 303 -9 3226 249 91 25 chr11 126820800 126820881 -21962591 + L1MEc LINE L1 2107 2181 -4215 2749 194 68 77 chr11 126820853 126821048 -21962424 + L1MD1 LINE L1 1454 1649 -4891 * 224 0 65 0 chr11 126821048 126821079 -21962393 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 2749 194 68 77 chr11 126821079 126821423 -21962049 + L1MD1 LINE L1 1649 1986 -4554 1810 147 3 0 chr11 126821423 126821740 -21961732 - AluSp SINE Alu 0 318 1 2749 194 68 77 chr11 126821740 126822056 -21961416 + L1MD1 LINE L1 1986 2303 -4237 4278 114 47 82 chr11 126822106 126822920 -21960552 + LTR1 LTR ERV1 1 785 0 13359 136 20 5 chr11 126822982 126825253 -21958219 + HUERS-P2 LTR ERV1 744 3088 0 4505 126 31 36 chr11 126825302 126826074 -21957398 + LTR1 LTR ERV1 18 785 0 1346 182 76 15 chr11 126826074 126826482 -21956990 + L1MD1 LINE L1 2300 2771 -3890 614 238 36 30 chr11 126826482 126826650 -21956822 - FRAM SINE Alu -10 166 1 1639 240 25 47 chr11 126826653 126827223 -21956249 + L1MD1 LINE L1 2722 3278 -3262 232 137 0 39 chr11 126827197 126827248 -21956224 - L1MC4 LINE L1 -1336 6706 6658 * 7746 215 45 16 chr11 126827386 126829939 -21953533 + L1MD1 LINE L1 3235 5911 -725 1777 159 149 42 chr11 126829939 126830322 -21953150 + MSTB LTR MaLR 3 426 0 7746 215 45 16 chr11 126830322 126831071 -21952401 + L1MD1 LINE L1 5911 6636 0 1147 178 58 33 chr11 126831093 126831369 -21952103 + L1MB8 LINE L1 5895 6177 -1 2684 240 29 58 chr11 126831374 126831649 -21951823 + L1ME1 LINE L1 2320 2602 -3544 2291 93 0 0 chr11 126831649 126831959 -21951513 + AluY SINE Alu 1 310 -1 2684 240 29 58 chr11 126831959 126832847 -21950625 + L1ME1 LINE L1 2602 3449 -2697 2062 111 0 3 chr11 126832849 126833138 -21950334 + AluSg1 SINE Alu 1 288 -21 231 254 0 0 chr11 126833138 126833201 -21950271 + GA-rich Low_complexity Low_complexity 1 63 0 960 169 0 0 chr11 126833213 126833391 -21950081 + GA-rich Low_complexity Low_complexity 1 178 0 5948 220 60 20 chr11 126833391 126836018 -21947454 + L1ME1 LINE L1 3437 6162 -4 268 230 0 0 chr11 126836356 126836430 -21947042 + (TA)n Simple_repeat Simple_repeat 2 75 0 1875 173 29 32 chr11 126836430 126836777 -21946695 + MER7A DNA MER2_type 2 345 -1 333 0 0 0 chr11 126836781 126836818 -21946654 + (CA)n Simple_repeat Simple_repeat 2 38 0 1185 194 76 75 chr11 126836827 126837218 -21946254 - MLT2D LTR ERVL -20 500 3 1161 306 83 2 chr11 126837219 126837641 -21945831 - LTR33 LTR ERVL -61 460 5 252 277 170 0 chr11 126837650 126837744 -21945728 - MIR SINE MIR -69 139 30 2085 127 0 3 chr11 126837947 126838254 -21945218 - AluSq SINE Alu -7 306 1 965 277 86 30 chr11 126838263 126838704 -21944768 + L2 LINE L2 2847 3312 -1 597 335 39 0 chr11 126839148 126839378 -21944094 - MIR SINE MIR -12 250 12 228 163 0 0 chr11 126839551 126839594 -21943878 + (TAA)n Simple_repeat Simple_repeat 2 44 0 562 238 33 66 chr11 126839642 126839823 -21943649 - MIR SINE MIR -70 192 18 399 296 51 20 chr11 126841484 126841684 -21941788 - MIR SINE MIR -1 261 18 388 309 0 0 chr11 126842928 126843022 -21940450 - MIR SINE MIR -60 202 109 401 282 0 0 chr11 126843035 126843138 -21940334 + L2 LINE L2 2584 2686 -628 357 228 191 29 chr11 126843154 126843290 -21940182 + L2 LINE L2 2904 3061 -252 401 206 41 0 chr11 126843329 126843402 -21940070 + L2 LINE L2 3194 3269 -3 237 285 14 14 chr11 126843401 126843480 -21939992 - MIR SINE MIR -107 101 31 * 256 278 172 57 chr11 126844251 126844460 -21939012 + MIR SINE MIR 18 250 -12 219 301 27 0 chr11 126844907 126844980 -21938492 - MIR3 SINE MIR -48 160 86 226 253 27 40 chr11 126845181 126845256 -21938216 - MIR SINE MIR -39 223 150 479 320 92 36 chr11 126846079 126846583 -21936889 + L2 LINE L2 2767 3311 -2 458 268 38 38 chr11 126846580 126846737 -21936735 + MIR3 SINE MIR 30 186 -22 * 213 360 40 0 chr11 126848008 126848108 -21935364 - MIR SINE MIR -73 135 32 300 293 0 0 chr11 126848124 126848206 -21935266 - MER3 DNA MER1_type -124 85 4 196 309 89 32 chr11 126848230 126848353 -21935119 + L2 LINE L2 3136 3265 -7 21 0 0 0 chr11 126848761 126848782 -21934690 + AT_rich Low_complexity Low_complexity 1 21 0 927 310 43 25 chr11 126849355 126849797 -21933675 - LTR16A LTR ERVL 0 450 1 590 280 72 49 chr11 126850359 126850432 -21933040 - L3 LINE CR1 -5 1572 1502 1584 265 38 15 chr11 126850432 126850911 -21932561 - LTR16C LTR ERVL 0 491 2 590 280 72 49 chr11 126850911 126851101 -21932371 - L3 LINE CR1 -75 1502 1303 251 211 171 13 chr11 126851074 126851150 -21932322 + L2 LINE L2 3171 3258 -55 * 183 114 0 0 chr11 126851154 126851189 -21932283 + (A)n Simple_repeat Simple_repeat 1 35 0 240 274 0 0 chr11 126851376 126851427 -21932045 - L2 LINE L2 0 3272 3222 315 287 47 47 chr11 126852362 126852491 -21930981 + L2 LINE L2 3138 3266 -6 228 132 0 0 chr11 126852947 126852985 -21930487 + MIR SINE MIR 97 134 -74 500 245 77 13 chr11 126853206 126853361 -21930111 - MIR SINE MIR -70 192 28 180 111 0 0 chr11 126853478 126853505 -21929967 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 211 281 107 25 chr11 126853513 126853634 -21929838 - L2 LINE L2 -1 3271 3141 404 247 0 0 chr11 126853839 126853924 -21929548 + L3 LINE CR1 1393 1477 -100 323 307 88 25 chr11 126854783 126854993 -21928479 + MIR SINE MIR 16 237 -25 1774 216 41 66 chr11 126855522 126856017 -21927455 + MLT2B1 LTR ERVL 2 485 -35 315 0 0 0 chr11 126856017 126856052 -21927420 + (CA)n Simple_repeat Simple_repeat 1 35 0 1774 216 41 66 chr11 126856052 126856088 -21927384 + MLT2B1 LTR ERVL 485 520 0 209 328 0 0 chr11 126856323 126856381 -21927091 + L3 LINE CR1 1518 1575 -2 1865 159 12 98 chr11 126857460 126857612 -21925860 + MLT1B LTR MaLR 1 164 -226 1531 216 32 35 chr11 126857612 126857983 -21925489 + MLT1A2 LTR MaLR 1 370 -4 1865 159 12 98 chr11 126857983 126858250 -21925222 + MLT1B LTR MaLR 164 384 -6 437 267 136 32 chr11 126859577 126859798 -21923674 + MIR SINE MIR 9 252 -10 495 329 24 33 chr11 126859827 126860037 -21923435 - L3 LINE CR1 -57 1520 1313 566 220 173 0 chr11 126861135 126861285 -21922187 + MER5A DNA MER1_type 14 189 0 420 290 8 32 chr11 126861285 126861395 -21922077 - MIR3 SINE MIR -52 156 50 211 277 321 9 chr11 126861476 126861588 -21921884 - MER5A DNA MER1_type -2 187 41 313 314 12 0 chr11 126861647 126861733 -21921739 + MIR SINE MIR 65 151 -57 201 349 16 0 chr11 126862117 126862180 -21921292 - L2 LINE L2 -2 3270 3207 227 248 79 134 chr11 126863144 126863346 -21920126 - L2 LINE L2 -86 3227 3037 213 257 0 119 chr11 126863676 126863760 -21919712 - MIR SINE MIR -83 125 75 2062 98 0 50 chr11 126863924 126864241 -21919231 + AluSg SINE Alu 6 306 -4 222 281 270 38 chr11 126864500 126864685 -21918787 + MIR SINE MIR 35 262 0 320 233 4 164 chr11 126864794 126864870 -21918602 + MIR SINE MIR 20 65 -182 1065 256 128 22 chr11 126864870 126865277 -21918195 + MLT1J2 LTR MaLR 1 450 0 320 233 4 164 chr11 126865277 126865381 -21918091 + MIR SINE MIR 65 184 -63 265 322 11 28 chr11 126866111 126866291 -21917181 + (TG)n Simple_repeat Simple_repeat 2 178 0 408 215 25 32 chr11 126866479 126866637 -21916835 + (TG)n Simple_repeat Simple_repeat 2 158 0 257 250 16 0 chr11 126866955 126867019 -21916453 - L2 LINE L2 -1 3271 3207 229 276 35 0 chr11 126867931 126868018 -21915454 + (TG)n Simple_repeat Simple_repeat 1 90 0 455 215 12 36 chr11 126868802 126868948 -21914524 - MIR SINE MIR -32 176 31 294 281 110 27 chr11 126869244 126869390 -21914082 + MIR SINE MIR 81 238 -24 845 184 0 101 chr11 126870046 126870253 -21913219 + MIR SINE MIR 76 261 -1 389 227 34 0 chr11 126870276 126870364 -21913108 - MIR SINE MIR -82 180 90 194 174 22 0 chr11 126870950 126870996 -21912476 + (CA)n Simple_repeat Simple_repeat 2 48 0 325 324 11 34 chr11 126871303 126871482 -21911990 + C-rich Low_complexity Low_complexity 4 178 0 206 191 48 0 chr11 126872024 126872066 -21911406 + CT-rich Low_complexity Low_complexity 5 48 0 208 267 0 0 chr11 126872403 126872448 -21911024 - MIR3 SINE MIR -48 160 116 401 328 9 0 chr11 126872530 126872646 -21910826 - L2 LINE L2 -19 3253 3137 342 285 75 75 chr11 126872657 126872843 -21910629 + HAL1 LINE L1 1 186 -2321 2242 96 7 0 chr11 126872844 126873147 -21910325 + AluSx SINE Alu 1 305 -7 253 292 83 50 chr11 126873528 126873648 -21909824 - L2 LINE L2 -9 3304 3181 1140 184 41 14 chr11 126873678 126873896 -21909576 - MIR SINE MIR -17 245 22 596 200 169 19 chr11 126874471 126874631 -21908841 - MIR SINE MIR -17 245 62 212 234 26 0 chr11 126874955 126875032 -21908440 + (CATA)n Simple_repeat Simple_repeat 4 82 0 2127 105 0 3 chr11 126876289 126876585 -21906887 - AluSg SINE Alu -15 295 1 1018 156 5 26 chr11 126876794 126876986 -21906486 + AluJb SINE Alu 121 308 -4 2352 96 54 25 chr11 126927316 126927670 -21855802 - THE1B LTR MaLR 0 364 1 833 122 0 0 chr11 126928171 126928286 -21855186 - FLAM_C SINE Alu -18 115 1 208 252 225 0 chr11 126928301 126928412 -21855060 - MIR SINE MIR -80 182 47 340 257 20 112 chr11 126928967 126929119 -21854353 - MIR3 SINE MIR 0 208 71 387 219 31 21 chr11 126929299 126929395 -21854077 + MIR3 SINE MIR 79 175 -33 2643 165 70 30 chr11 126929517 126929642 -21853830 - Zaphod DNA AcHobo 0 4031 3912 2109 194 6 6 chr11 126929642 126930007 -21853465 + MLT1A1 LTR MaLR 1 365 0 2643 165 70 30 chr11 126930007 126930537 -21852935 - Zaphod DNA AcHobo -119 3912 3350 2511 215 63 36 chr11 126930550 126931211 -21852261 - Zaphod DNA AcHobo -3349 682 4 2693 85 0 3 chr11 126931448 126931813 -21851659 - THE1C LTR MaLR -11 364 1 432 319 65 0 chr11 126932991 126933129 -21850343 + L2 LINE L2 3126 3272 0 189 121 0 0 chr11 126933187 126933220 -21850252 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 306 370 8 8 chr11 126935192 126935311 -21848161 - MIR SINE MIR -65 143 25 327 104 0 0 chr11 126935447 126935495 -21847977 + (T)n Simple_repeat Simple_repeat 1 48 0 2175 166 26 7 chr11 126936757 126937179 -21846293 - L1MB8 LINE L1 0 6178 5749 267 283 33 43 chr11 126937808 126937900 -21845572 - MIR3 SINE MIR -28 180 90 1419 210 136 27 chr11 126937913 126938398 -21845074 - MLT1H LTR MaLR 0 549 12 228 125 0 0 chr11 126938400 126938432 -21845040 - MIR SINE MIR -140 68 37 378 0 0 0 chr11 126939745 126939787 -21843685 + (TG)n Simple_repeat Simple_repeat 1 42 0 368 223 80 18 chr11 126939831 126939943 -21843529 - MIR3 SINE MIR -6 202 84 22 0 0 0 chr11 126940404 126940426 -21843046 + AT_rich Low_complexity Low_complexity 1 22 0 437 215 190 49 chr11 126940695 126940858 -21842614 + MIR3 SINE MIR 1 186 -22 444 230 40 0 chr11 126940900 126941000 -21842472 + MIR SINE MIR 151 254 -8 507 314 49 20 chr11 126941071 126941275 -21842197 + MER63A DNA MER1_type 1 210 0 381 289 20 20 chr11 126942250 126942399 -21841073 + L2 LINE L2 2828 2976 -296 205 284 30 15 chr11 126942654 126942721 -21840751 + L2 LINE L2 3245 3312 -1 870 186 83 0 chr11 126943394 126943550 -21839922 - FAM SINE Alu -6 169 1 736 302 107 54 chr11 126943552 126944029 -21839443 - L2 LINE L2 -19 3253 2756 489 294 51 40 chr11 126944032 126944209 -21839263 + MER91A DNA MER1_type 1 179 -17 215 227 23 0 chr11 126944286 126944330 -21839142 + MIR3 SINE MIR 141 185 -23 374 277 73 34 chr11 126945154 126945331 -21838141 + MIR SINE MIR 79 262 0 347 329 44 15 chr11 126945341 126945478 -21837994 - MIR SINE MIR -13 249 109 685 188 0 36 chr11 126945525 126945663 -21837809 + AluJo SINE Alu 2 134 -178 449 268 30 34 chr11 126945901 126946079 -21837393 + MIR SINE MIR 35 209 -53 528 230 122 0 chr11 126946502 126946641 -21836831 - MIR SINE MIR -93 169 14 277 244 40 201 chr11 126947207 126947481 -21835991 + MIR SINE MIR 9 238 -24 401 191 277 0 chr11 126947963 126948057 -21835415 - MIR SINE MIR -62 200 81 240 250 184 29 chr11 126948424 126948560 -21834912 + L3b LINE CR1 1177 1333 -250 360 281 321 0 chr11 126948886 126949082 -21834390 - L2 LINE L2 -22 3250 2992 1422 204 47 4 chr11 126949098 126949373 -21834099 + AluJb SINE Alu 1 287 -25 607 148 8 8 chr11 126949476 126949598 -21833874 + GA-rich Low_complexity Low_complexity 4 125 0 198 209 0 0 chr11 126949593 126949636 -21833836 + G-rich Low_complexity Low_complexity 4 46 0 * 252 297 16 76 chr11 126949652 126949837 -21833635 - L2 LINE L2 -302 2970 2793 1399 170 19 13 chr11 126949846 126950163 -21833309 - Charlie4a DNA MER1_type -9 499 181 1316 115 0 0 chr11 126950163 126950345 -21833127 + AluSq SINE Alu 130 311 -2 602 190 37 80 chr11 126950345 126950508 -21832964 - Charlie4a DNA MER1_type -317 191 36 1474 257 46 19 chr11 126950579 126951011 -21832461 + L2 LINE L2 2836 3279 -34 1126 252 68 46 chr11 126951311 126951768 -21831704 + MLT1C LTR MaLR 1 467 0 325 294 49 0 chr11 126951780 126951875 -21831597 - Charlie8 DNA MER1_type -2227 190 91 346 232 71 9 chr11 126951875 126951987 -21831485 - LTR67 LTR ERVL 0 557 439 198 298 18 0 chr11 126952120 126952177 -21831295 - MIR SINE MIR -169 93 36 229 263 34 89 chr11 126952245 126952424 -21831048 + MER112 DNA MER1_type 1 169 -91 217 158 26 0 chr11 126952424 126952462 -21831010 + (CCTAT)n Simple_repeat Simple_repeat 2 40 0 283 319 0 0 chr11 126952731 126952803 -21830669 - Charlie8 DNA MER1_type -2344 73 2 262 257 0 14 chr11 126952886 126952956 -21830516 + L2 LINE L2 3229 3297 -16 210 238 171 57 chr11 126954644 126954749 -21828723 - MIR SINE MIR -118 144 28 282 313 113 9 chr11 126954787 126954902 -21828570 - L2 LINE L2 -10 3262 3136 2297 120 56 6 chr11 126955460 126955817 -21827655 - THE1C LTR MaLR 0 375 1 372 241 12 33 chr11 126956144 126956267 -21827205 - MER5B DNA MER1_type -3 186 57 222 318 126 42 chr11 126956525 126956764 -21826708 + L2 LINE L2 3030 3288 -25 404 274 134 13 chr11 126956876 126957033 -21826439 + MIR3 SINE MIR 33 208 0 2266 118 0 0 chr11 126957279 126957575 -21825897 + AluSx SINE Alu 1 296 -16 1106 216 104 120 chr11 126957853 126958371 -21825101 + MLT1J LTR MaLR 1 510 -1 228 248 28 46 chr11 126958438 126958541 -21824931 + MIR SINE MIR 84 178 -30 371 298 152 6 chr11 126958707 126958865 -21824607 + MIR SINE MIR 20 200 -62 242 298 125 10 chr11 126959767 126959871 -21823601 + L2 LINE L2 3149 3264 -8 372 22 0 0 chr11 126959924 126959969 -21823503 + (GTTTG)n Simple_repeat Simple_repeat 4 48 0 390 322 84 35 chr11 126960244 126960446 -21823026 + MIR SINE MIR 16 227 -35 3160 175 6 0 chr11 126960522 126961036 -21822436 - MLT2B1 LTR ERVL 0 520 4 320 289 132 0 chr11 126961466 126961587 -21821885 - MIR3 SINE MIR -6 202 66 538 246 15 8 chr11 126961750 126961880 -21821592 - MLT1L LTR MaLR -149 466 336 1766 183 3 3 chr11 126961902 126962197 -21821275 + AluJb SINE Alu 1 295 -17 2106 158 0 0 chr11 126962197 126962507 -21820965 + AluSx SINE Alu 1 310 -2 330 283 55 21 chr11 126962572 126962717 -21820755 - MLT1L LTR MaLR -424 191 42 247 308 13 13 chr11 126962993 126963071 -21820401 + L2 LINE L2 3236 3313 0 2586 63 0 0 chr11 126963320 126963620 -21819852 - AluY SINE Alu -11 300 1 1794 171 40 60 chr11 126963662 126964060 -21819412 - MLT1B LTR MaLR 0 390 1 864 137 26 20 chr11 126964060 126964213 -21819259 - MLT1B LTR MaLR -236 154 1 414 250 62 7 chr11 126964549 126964693 -21818779 - MLT1I LTR MaLR -11 398 247 309 288 0 0 chr11 126965788 126965868 -21817604 - MIR SINE MIR -2 260 181 1077 259 85 19 chr11 126965947 126966008 -21817464 - MLT1J LTR MaLR -97 414 358 186 43 0 0 chr11 126966008 126966031 -21817441 + (CTTAT)n Simple_repeat Simple_repeat 3 25 0 1077 259 85 19 chr11 126966031 126966347 -21817125 - MLT1J LTR MaLR -153 358 12 291 219 68 0 chr11 126966357 126966430 -21817042 - MIR SINE MIR -71 191 114 249 366 56 37 chr11 126966507 126966668 -21816804 + L2 LINE L2 3108 3271 -1 485 319 48 61 chr11 126967540 126967850 -21815622 + L2 LINE L2 2967 3272 0 987 342 69 49 chr11 126967933 126968096 -21815376 + L3 LINE CR1 852 1010 -567 2246 108 0 36 chr11 126968096 126968402 -21815070 + AluSx SINE Alu 1 295 -17 987 342 69 49 chr11 126968402 126968547 -21814925 + L3 LINE CR1 1010 1151 -426 674 219 92 30 chr11 126968547 126968711 -21814761 + MER45A DNA AcHobo 1 174 -4 987 342 69 49 chr11 126968711 126969111 -21814361 + L3 LINE CR1 1151 1575 -2 229 314 86 57 chr11 126970781 126970886 -21812586 - L3b LINE CR1 -6 1577 1470 225 287 81 0 chr11 126971108 126971195 -21812277 - L2 LINE L2 -10 3303 3210 285 271 122 0 chr11 126971383 126971490 -21811982 - MIR SINE MIR -32 230 111 210 306 135 52 chr11 126971639 126971891 -21811581 - L2 LINE L2 -189 3083 2811 1177 253 97 44 chr11 126973477 126974054 -21809418 + L2 LINE L2 2708 3312 -1 282 216 0 0 chr11 126974358 126974432 -21809040 + (CA)n Simple_repeat Simple_repeat 1 74 0 216 310 0 0 chr11 126975626 126975697 -21807775 + MIR SINE MIR 63 133 -129 1940 113 0 107 chr11 126975867 126976204 -21807268 + AluSx SINE Alu 1 301 -1 495 216 132 89 chr11 126976568 126976758 -21806714 - MIR SINE MIR -63 199 2 445 244 17 50 chr11 126976773 126976892 -21806580 - L2 LINE L2 -3 3310 3196 21 0 0 0 chr11 126977397 126977418 -21806054 + AT_rich Low_complexity Low_complexity 1 21 0 404 284 69 41 chr11 126977454 126977771 -21805701 + L1MC4a LINE L1 5585 5910 -1898 198 320 40 13 chr11 126977844 126977919 -21805553 + MIR SINE MIR 186 262 0 451 251 87 4 chr11 126979534 126979678 -21803794 - MIR3 SINE MIR -39 169 14 387 271 30 30 chr11 126980099 126980265 -21803207 + MIR3 SINE MIR 24 189 -19 539 315 90 0 chr11 126980359 126980559 -21802913 - MIR SINE MIR -10 252 35 297 89 0 0 chr11 126980608 126980653 -21802819 + (CA)n Simple_repeat Simple_repeat 1 45 0 650 175 7 0 chr11 126981443 126981586 -21801886 + (TG)n Simple_repeat Simple_repeat 2 145 0 310 277 106 11 chr11 126982199 126982293 -21801179 - L2 LINE L2 0 3272 3170 210 37 0 0 chr11 126982735 126982762 -21800710 + (CA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr11 126983169 126983190 -21800282 + AT_rich Low_complexity Low_complexity 1 21 0 291 54 0 0 chr11 126983539 126983576 -21799896 + (GA)n Simple_repeat Simple_repeat 1 37 0 180 0 0 0 chr11 126983898 126983918 -21799554 + (TG)n Simple_repeat Simple_repeat 2 21 0 278 235 10 0 chr11 126984097 126984199 -21799273 + CT-rich Low_complexity Low_complexity 2 104 0 327 164 0 16 chr11 126986241 126986302 -21797170 + ORSL DNA AcHobo 4 63 -212 730 180 0 53 chr11 126986334 126986484 -21796988 + AluSg/x SINE Alu 133 274 -36 351 0 0 0 chr11 126986487 126986526 -21796946 + (TC)n Simple_repeat Simple_repeat 2 40 0 * 464 89 13 0 chr11 126986525 126986604 -21796868 + (TA)n Simple_repeat Simple_repeat 1 80 0 564 142 58 25 chr11 126986604 126986724 -21796748 + ORSL DNA AcHobo 90 213 -62 573 236 42 7 chr11 126986752 126986896 -21796576 - MIR3 SINE MIR -52 156 8 269 331 97 7 chr11 126988027 126988181 -21795291 + L3b LINE CR1 1405 1572 -11 206 263 0 0 chr11 126988980 126989035 -21794437 - MIR SINE MIR -65 143 98 411 263 18 0 chr11 126989758 126989872 -21793600 - MIR SINE MIR -62 200 85 2174 87 3 7 chr11 126990941 126991239 -21792233 - AluSx SINE Alu -13 299 3 186 326 41 31 chr11 126992659 126992757 -21790715 + L2 LINE L2 3138 3236 -36 1680 184 75 3 chr11 126992771 126993102 -21790370 + MER82 DNA MER2_type 2 356 -297 807 175 0 7 chr11 126993104 126993241 -21790231 - FAM SINE Alu -14 171 36 1429 221 27 17 chr11 126993242 126993541 -21789931 + MER82 DNA MER2_type 351 652 -1 1312 229 62 10 chr11 126993549 126993922 -21789550 + L1MD2 LINE L1 5789 6132 -227 189 154 26 26 chr11 126994584 126994623 -21788849 + L2 LINE L2 3256 3294 -19 272 355 51 36 chr11 126994680 126994818 -21788654 - L2 LINE L2 -12 3260 3121 410 274 120 46 chr11 126994867 126995042 -21788430 - MLT1K LTR MaLR -2 586 399 482 226 216 6 chr11 126995468 126995649 -21787823 + MIR SINE MIR 7 225 -37 244 381 22 14 chr11 126995749 126995888 -21787584 - L2 LINE L2 -2 3311 3172 290 272 54 11 chr11 126995969 126996061 -21787411 - MIR SINE MIR -51 211 116 2137 105 0 3 chr11 126996163 126996459 -21787013 + AluSx SINE Alu 1 295 -17 251 307 80 0 chr11 126996893 126996981 -21786491 - MIR SINE MIR -156 106 12 605 292 12 29 chr11 126997427 126997598 -21785874 + MIR SINE MIR 30 197 -65 218 324 157 0 chr11 126998456 126998564 -21784908 - L2 LINE L2 -9 3304 3180 2352 250 11 5 chr11 126998588 126999220 -21784252 + L1MC4 LINE L1 7104 7739 -303 1189 295 95 9 chr11 126999262 126999713 -21783759 + L2 LINE L2 2285 2774 -540 2356 254 130 16 chr11 126999715 127000219 -21783253 + ERVL-C1 LTR ERVL 411 1003 -4761 1650 203 0 0 chr11 127000219 127000515 -21782957 + AluJo SINE Alu 1 296 -16 2356 254 130 16 chr11 127000515 127000640 -21782832 + ERVL-C1 LTR ERVL 1003 1112 -4652 1545 165 86 18 chr11 127000640 127000979 -21782493 - MER57A LTR ERV1 0 403 42 1835 285 69 23 chr11 127000987 127001054 -21782418 + ERVL-C1 LTR ERVL 1110 1172 -4592 189 107 0 0 chr11 127001054 127001082 -21782390 + (TTGG)n Simple_repeat Simple_repeat 1 28 0 1835 285 69 23 chr11 127001082 127001232 -21782240 + ERVL-C1 LTR ERVL 1172 1314 -4450 2336 129 28 28 chr11 127001232 127001596 -21781876 - THE1B LTR MaLR 0 364 1 1835 285 69 23 chr11 127001596 127001984 -21781488 + ERVL-C1 LTR ERVL 1314 1744 -4020 1623 219 0 3 chr11 127002085 127002386 -21781086 + ERVL-C1 LTR ERVL 2048 2347 -3417 1988 183 97 29 chr11 127002386 127002877 -21780595 - MER39 LTR ERV1 0 707 5 690 174 74 8 chr11 127002880 127003001 -21780471 + ERVL-C1 LTR ERVL 2343 2471 -3293 * 4097 218 39 7 chr11 127002974 127004023 -21779449 + ERVL-C1 LTR ERVL 4620 5651 -3 1385 223 32 47 chr11 127004025 127004428 -21779044 + MLT2C1 LTR ERVL 1 397 0 1590 315 97 41 chr11 127004684 127004836 -21778636 + ERVL LTR ERVL 1758 1900 -3864 2571 120 234 34 chr11 127004836 127005362 -21778110 + MER51A LTR ERV1 1 631 -3 1590 315 97 41 chr11 127005362 127006180 -21777292 + ERVL LTR ERVL 1900 2782 -2982 340 231 243 0 chr11 127006211 127006384 -21777088 - MER5C DNA MER1_type -1 323 109 1520 197 7 10 chr11 127006483 127006782 -21776690 - AluJo SINE Alu -14 298 1 2679 126 82 7 chr11 127007114 127007568 -21775904 - L1PA16 LINE L1 -3 6163 5676 504 290 8 8 chr11 127007846 127007970 -21775502 - MER5C DNA MER1_type -200 124 1 296 274 0 14 chr11 127008224 127008297 -21775175 + ERVL LTR ERVL 3076 3147 -2507 713 265 81 0 chr11 127008361 127008572 -21774900 + ERVL LTR ERVL 3333 3560 -2204 3403 195 90 60 chr11 127008579 127009403 -21774069 - MER21B LTR ERV1 -3 860 12 2547 309 90 61 chr11 127009516 127011173 -21772299 + ERVL LTR ERVL 3347 5362 -402 4436 274 45 26 chr11 127011897 127013210 -21770262 + ERVL LTR ERVL 4008 5350 -414 360 0 0 0 chr11 127013210 127013250 -21770222 + (CA)n Simple_repeat Simple_repeat 2 41 0 4436 274 45 26 chr11 127013250 127013305 -21770167 + ERVL LTR ERVL 5350 5402 -362 1263 236 305 22 chr11 127013679 127014282 -21769190 + LTR50 LTR ERVL 20 793 -2 326 333 58 86 chr11 127015358 127015484 -21767988 - L2 LINE L2 -1 3271 3143 2040 137 0 0 chr11 127015484 127015790 -21767682 + AluSx SINE Alu 1 306 -6 326 333 58 86 chr11 127015790 127016093 -21767379 - L2 LINE L2 -129 3143 2854 2047 121 0 3 chr11 127016815 127017112 -21766360 + AluSx SINE Alu 1 296 -16 343 297 68 40 chr11 127017163 127017311 -21766161 + MIR SINE MIR 40 191 -71 1579 173 20 105 chr11 127018506 127018905 -21764567 + MLT1A1 LTR MaLR 1 365 0 300 217 0 17 chr11 127019290 127019350 -21764122 - L2 LINE L2 -7 3265 3207 249 108 0 0 chr11 127019749 127019786 -21763686 + (CA)n Simple_repeat Simple_repeat 1 37 0 471 299 71 7 chr11 127021152 127021306 -21762166 - MIR SINE MIR -91 171 8 936 189 0 0 chr11 127022416 127022585 -21760887 + FRAM SINE Alu 1 169 -7 1878 116 8 0 chr11 127023353 127023620 -21759852 - AluSc SINE Alu -40 269 1 666 255 109 47 chr11 127024293 127025001 -21758471 + L1ME3A LINE L1 831 1554 -4862 1247 200 132 0 chr11 127025127 127025490 -21757982 + AluJo SINE Alu 2 399 0 1022 137 0 0 chr11 127025507 127025682 -21757790 + AluSg/x SINE Alu 136 310 0 369 283 87 52 chr11 127025682 127025855 -21757617 + L1ME3A LINE L1 2347 2525 -4082 246 262 110 28 chr11 127025855 127026000 -21757472 + LTR68 LTR ERV1 9 165 -575 612 214 96 102 chr11 127026466 127026937 -21756535 + L1ME3A LINE L1 2485 2952 -3474 914 262 16 62 chr11 127026945 127027254 -21756218 + L1MEc LINE L1 50 344 -6052 2622 254 33 16 chr11 127027417 127028182 -21755290 - L1MEc LINE L1 -5260 1136 359 871 244 70 20 chr11 127028186 127028603 -21754869 + L1MEc LINE L1 2020 4109 -2106 2650 265 65 49 chr11 127028653 127029180 -21754292 + L1ME3A LINE L1 3964 4481 -1969 517 167 21 0 chr11 127029180 127029276 -21754196 + U13 snRNA snRNA 5 102 -2 2650 265 65 49 chr11 127029276 127030289 -21753183 + L1ME3A LINE L1 4481 5564 -886 2481 89 0 0 chr11 127030289 127030592 -21752880 + AluY SINE Alu 1 303 -8 2650 265 65 49 chr11 127030592 127031481 -21751991 + L1ME3A LINE L1 5564 6437 -13 318 258 105 18 chr11 127031499 127031718 -21751754 + HAL1b LINE L1 1228 1348 0 575 230 115 60 chr11 127031735 127031970 -21751502 + L1MC5 LINE L1 7659 7906 -55 1030 162 45 93 chr11 127033002 127033080 -21750392 - MER33 DNA MER1_type -2261 324 244 2190 100 7 0 chr11 127033080 127033419 -21750053 - AluSq SINE Alu 0 341 1 1030 162 45 93 chr11 127033419 127033672 -21749800 - MER33 DNA MER1_type -2341 244 7 359 250 173 0 chr11 127034264 127034432 -21749040 + MIR SINE MIR 63 259 -3 486 285 68 63 chr11 127035552 127035759 -21747713 - MIR SINE MIR -52 210 3 769 291 67 72 chr11 127036096 127036542 -21746930 - L3 LINE CR1 -11 1566 1123 341 155 52 9 chr11 127036602 127036718 -21746754 + CT-rich Low_complexity Low_complexity 1 121 0 2078 138 0 0 chr11 127038168 127038464 -21745008 + AluSx SINE Alu 1 296 -16 428 326 28 0 chr11 127038684 127038825 -21744647 + MIR3 SINE MIR 49 193 -15 192 253 0 72 chr11 127038945 127039028 -21744444 - L2 LINE L2 -8 3264 3188 246 402 0 0 chr11 127039252 127039359 -21744113 + L3 LINE CR1 1464 1570 -7 241 272 254 0 chr11 127039962 127040076 -21743396 + MIR3 SINE MIR 40 182 -26 276 289 78 55 chr11 127040939 127041067 -21742405 - MIR3 SINE MIR -65 143 13 369 301 70 45 chr11 127042369 127042568 -21740904 + L2 LINE L2 3068 3271 -1 1533 259 143 11 chr11 127042614 127043139 -21740333 + L3 LINE CR1 582 1175 -402 907 268 68 0 chr11 127043231 127043466 -21740006 + MIR SINE MIR 8 258 -4 653 274 127 4 chr11 127043474 127043711 -21739761 + L3 LINE CR1 1301 1566 -11 308 336 16 8 chr11 127044432 127044554 -21738918 + MIR3 SINE MIR 67 189 -19 281 294 49 10 chr11 127044631 127044733 -21738739 - MIR SINE MIR -69 139 34 411 290 8 0 chr11 127045901 127046025 -21737447 - MER103 DNA DNA -38 128 4 223 196 18 36 chr11 127046089 127046145 -21737327 + MIR3 SINE MIR 151 205 -3 241 310 23 46 chr11 127046379 127046466 -21737006 + MIR SINE MIR 40 124 -84 490 215 72 28 chr11 127046467 127046657 -21736815 + MLT1E3 LTR MaLR 2 263 -391 3108 156 4 38 chr11 127046662 127047212 -21736260 + L1PA16 LINE L1 5620 6150 -16 26 30 0 0 chr11 127047278 127047311 -21736161 + AT_rich Low_complexity Low_complexity 1 33 0 4074 75 6 6 chr11 127047322 127047858 -21735614 + L1PA10 LINE L1 5622 6157 -11 1226 241 50 9 chr11 127048108 127048431 -21735041 + MLT1E3 LTR MaLR 288 623 -1 333 299 75 9 chr11 127048436 127048543 -21734929 + MIR SINE MIR 132 245 -17 195 341 11 11 chr11 127048542 127048633 -21734839 + MIR SINE MIR 126 216 -46 * 304 279 217 8 chr11 127049047 127049176 -21734296 - L2 LINE L2 -1 3271 3116 3423 249 172 46 chr11 127049626 127049687 -21733785 - L2 LINE L2 -227 3086 3034 2365 103 10 3 chr11 127049687 127049998 -21733474 + AluSq SINE Alu 1 313 0 3423 249 172 46 chr11 127049998 127050312 -21733160 - L2 LINE L2 -279 3034 2761 2414 121 28 6 chr11 127050312 127050668 -21732804 + THE1B LTR MaLR 1 364 0 3423 249 172 46 chr11 127050668 127050796 -21732676 - L2 LINE L2 -552 2761 2650 180 0 0 0 chr11 127050796 127050816 -21732656 + (TA)n Simple_repeat Simple_repeat 2 21 0 3423 249 172 46 chr11 127050816 127051829 -21731643 - L2 LINE L2 -663 2650 1386 471 286 127 24 chr11 127051889 127052102 -21731370 - MIR SINE MIR -11 251 17 1572 172 45 71 chr11 127052419 127052493 -21730979 - MLT1D LTR MaLR 0 505 431 2294 92 14 3 chr11 127052493 127052788 -21730684 - AluSq SINE Alu -11 302 5 1572 172 45 71 chr11 127052788 127053091 -21730381 - MLT1D LTR MaLR -74 431 138 206 241 139 65 chr11 127054889 127054997 -21728475 + MIR SINE MIR 97 212 -50 278 238 19 76 chr11 127055099 127055204 -21728268 - MER5B DNA MER1_type -45 133 35 10378 33 6 153 chr11 127055215 127056836 -21726636 + SVA Other Other 4 1385 -1 250 204 0 0 chr11 127056879 127056928 -21726544 - MER5B DNA MER1_type -129 49 1 783 192 42 6 chr11 127057378 127057545 -21725927 - MER104 DNA Tc2 -5 175 3 388 333 112 49 chr11 127057923 127058440 -21725032 - L2 LINE L2 -7 3265 2718 749 254 114 48 chr11 127059192 127059543 -21723929 - MLT1J1 LTR MaLR 0 446 73 369 337 41 18 chr11 127059621 127059790 -21723682 + MIR3 SINE MIR 5 177 -31 467 260 81 8 chr11 127060706 127060829 -21722643 + MIR3 SINE MIR 56 187 -21 2102 140 0 0 chr11 127063488 127063774 -21719698 + AluSx SINE Alu 6 291 -21 180 284 216 9 chr11 127064195 127064311 -21719161 - MIR SINE MIR -46 216 77 223 241 37 37 chr11 127066372 127066426 -21717046 - MIR SINE MIR -61 147 94 429 237 53 15 chr11 127066454 127066585 -21716887 - MIR SINE MIR -69 193 58 313 275 12 0 chr11 127067117 127067197 -21716275 - MIR SINE MIR -78 130 50 418 265 29 22 chr11 127067690 127067826 -21715646 + Charlie8 DNA MER1_type 49 185 -2232 228 213 0 0 chr11 127067936 127067983 -21715489 + Charlie8 DNA MER1_type 219 265 -2152 2236 102 3 0 chr11 127068193 127068510 -21714962 - AluSp SINE Alu 0 319 2 187 310 43 120 chr11 127068873 127069131 -21714341 - L2 LINE L2 -125 3147 2910 448 302 79 20 chr11 127069258 127069460 -21714012 - L2 LINE L2 -560 2754 2541 185 366 0 24 chr11 127069487 127069569 -21713903 + L2 LINE L2 3234 3313 0 315 330 94 31 chr11 127069680 127069871 -21713601 - MIR SINE MIR -12 250 48 499 230 63 32 chr11 127070070 127070196 -21713276 - L2 LINE L2 -1 3271 3142 252 149 0 0 chr11 127071426 127071473 -21711999 - MER103 DNA DNA -109 57 11 362 359 75 0 chr11 127071807 127071966 -21711506 - L3 LINE CR1 -17 1560 1390 198 71 0 0 chr11 127072510 127072538 -21710934 + (TAA)n Simple_repeat Simple_repeat 1 28 0 2111 110 0 18 chr11 127072656 127072938 -21710534 - AluSq SINE Alu -36 277 1 213 263 35 18 chr11 127072939 127072996 -21710476 - MIR SINE MIR -58 150 93 272 352 11 11 chr11 127073208 127073299 -21710173 + MIR SINE MIR 23 113 -95 256 234 188 0 chr11 127073336 127073400 -21710072 + MIR SINE MIR 179 254 -8 297 0 0 0 chr11 127073431 127073464 -21710008 + (A)n Simple_repeat Simple_repeat 1 33 0 231 278 210 24 chr11 127073632 127073778 -21709694 - L2 LINE L2 -479 2835 2717 3659 116 15 15 chr11 127073778 127074305 -21709167 + MER1A DNA MER1_type 1 527 0 231 278 210 24 chr11 127074305 127074363 -21709109 - L2 LINE L2 -597 2717 2593 768 266 64 21 chr11 127076354 127076587 -21706885 + MIR SINE MIR 14 256 -6 2455 102 0 0 chr11 127076612 127076925 -21706547 + AluSq SINE Alu 1 313 0 708 268 149 4 chr11 127076957 127077185 -21706287 - MIR SINE MIR 0 262 2 270 293 40 0 chr11 127077238 127077313 -21706159 + L2 LINE L2 3193 3270 -2 207 208 19 0 chr11 127077579 127077632 -21705840 + GA-rich Low_complexity Low_complexity 2 55 0 243 0 0 0 chr11 127078130 127078157 -21705315 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 306 0 0 0 chr11 127078166 127078200 -21705272 + (CA)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr11 127078431 127078453 -21705019 + AT_rich Low_complexity Low_complexity 1 22 0 316 284 92 30 chr11 127078972 127079132 -21704340 - MIR3 SINE MIR -5 203 32 327 294 55 9 chr11 127079287 127079396 -21704076 - L2 LINE L2 -4 3268 3155 409 197 197 0 chr11 127079773 127079925 -21703547 + MER53 DNA DNA 2 183 -6 265 271 53 30 chr11 127080931 127080977 -21702495 - MIR SINE MIR -44 218 175 2405 138 19 8 chr11 127080977 127081348 -21702124 + THE1C LTR MaLR 1 375 0 265 271 53 30 chr11 127081348 127081445 -21702027 - MIR SINE MIR -87 175 73 1234 160 34 2 chr11 127082695 127083107 -21700365 - MLT2B1 LTR ERVL 0 520 1 1087 170 25 184 chr11 127083672 127084030 -21699442 - AluY SINE Alu 0 301 1 2290 123 10 0 chr11 127084400 127084709 -21698763 - AluSx SINE Alu 0 312 1 222 240 0 0 chr11 127084724 127084774 -21698698 + MIR SINE MIR 77 126 -136 355 244 23 0 chr11 127085302 127085388 -21698084 - MIR SINE MIR -63 145 58 21 0 0 0 chr11 127086039 127086060 -21697412 + AT_rich Low_complexity Low_complexity 1 21 0 1290 243 85 12 chr11 127086094 127086493 -21696979 + MLT1J2 LTR MaLR 2 429 -21 682 205 12 37 chr11 127086503 127086664 -21696808 - MIR SINE MIR -86 176 20 2306 109 0 3 chr11 127087223 127087525 -21695947 + AluSc SINE Alu 1 301 -8 265 212 322 34 chr11 127088476 127088594 -21694878 + MIR SINE MIR 111 262 0 204 54 36 71 chr11 127088769 127088825 -21694647 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 264 227 0 41 chr11 127089233 127089330 -21694142 + MLT1H LTR MaLR 26 118 -431 493 257 273 34 chr11 127089330 127089708 -21693764 + MLT1H LTR MaLR 69 536 -13 183 263 42 85 chr11 127089798 127089916 -21693556 + MIR SINE MIR 109 221 -41 491 224 53 40 chr11 127090194 127090346 -21693126 - L3 LINE CR1 -59 1518 1365 398 293 31 84 chr11 127090386 127090611 -21692861 + L2 LINE L2 3101 3313 0 1161 298 108 19 chr11 127090879 127091413 -21692059 - L2 LINE L2 -4 3309 2709 297 51 0 0 chr11 127091413 127091452 -21692020 + (CA)n Simple_repeat Simple_repeat 1 39 0 1161 298 108 19 chr11 127091452 127091577 -21691895 - L2 LINE L2 -604 2709 2596 947 195 0 0 chr11 127091578 127091732 -21691740 + FRAM SINE Alu 1 153 -23 28 0 0 0 chr11 127091736 127091764 -21691708 + AT_rich Low_complexity Low_complexity 1 28 0 1888 136 7 0 chr11 127092065 127092345 -21691127 + L1MB7 LINE L1 5884 6165 -19 1432 153 44 56 chr11 127092347 127092408 -21691064 + L1MC3 LINE L1 7461 7521 -264 2178 96 14 10 chr11 127092408 127092701 -21690771 + AluSq SINE Alu 1 294 -19 1432 153 44 56 chr11 127092701 127092960 -21690512 + L1MC3 LINE L1 7521 7777 -8 2551 55 0 13 chr11 127094168 127094480 -21688992 + AluY SINE Alu 1 308 -3 343 306 102 19 chr11 127095299 127095456 -21688016 - MER5B DNA MER1_type -7 171 2 746 218 21 64 chr11 127095471 127095586 -21687886 - MER5A DNA MER1_type -4 185 80 2272 125 3 0 chr11 127095586 127095889 -21687583 - AluSx SINE Alu -8 304 1 746 218 21 64 chr11 127095889 127095961 -21687511 - MER5A DNA MER1_type -109 80 6 321 318 12 0 chr11 127095990 127096075 -21687397 + MER5A DNA MER1_type 9 94 -95 294 346 31 31 chr11 127096675 127096805 -21686667 + MIR3 SINE MIR 15 144 -64 838 215 5 11 chr11 127097119 127097310 -21686162 - MARNA DNA Mariner -169 417 228 227 240 0 0 chr11 127097322 127097372 -21686100 + MIR3 SINE MIR 145 194 -14 246 320 47 47 chr11 127097372 127097522 -21685950 - MARNA DNA Mariner -370 216 67 2271 72 14 0 chr11 127097528 127097857 -21685615 - AluSp SINE Alu 0 333 1 711 190 27 49 chr11 127097866 127098050 -21685422 + MER104 DNA MER2_type 1 180 0 194 171 24 49 chr11 127098177 127098218 -21685254 - MER5B DNA MER1_type -3 175 136 * 358 151 0 0 chr11 127098203 127098256 -21685216 + MER5B DNA MER1_type 91 143 -35 234 281 35 44 chr11 127098367 127098481 -21684991 + MLT1K LTR MaLR 455 567 -21 1965 97 17 7 chr11 127098550 127098848 -21684624 - THE1C-int LTR MaLR -1279 301 1 1957 136 56 58 chr11 127098848 127099224 -21684248 - THE1C LTR MaLR 0 375 1 700 176 101 0 chr11 127099300 127099419 -21684053 - FLAM_A SINE Alu -2 131 1 2384 101 83 3 chr11 127099885 127100222 -21683250 + THE1B LTR MaLR 1 364 0 3160 189 28 25 chr11 127100932 127101058 -21682414 + L1MB8 LINE L1 4646 4770 -1414 1716 178 24 0 chr11 127101058 127101350 -21682122 + AluJb SINE Alu 1 299 -13 3160 189 28 25 chr11 127101350 127101855 -21681617 + L1MB8 LINE L1 4770 5274 -910 2112 184 63 42 chr11 127101855 127101954 -21681518 + MLT1D LTR MaLR 1 97 -408 2251 123 0 10 chr11 127101954 127102263 -21681209 + AluSx SINE Alu 1 306 -6 2112 184 63 42 chr11 127102263 127102657 -21680815 + MLT1D LTR MaLR 97 504 -1 3160 189 28 25 chr11 127102657 127102835 -21680637 + L1MB8 LINE L1 5274 5450 -734 589 179 1 9 chr11 127102836 127102953 -21680519 + MLT1D LTR MaLR 28 129 -376 576 206 145 0 chr11 127103503 127103634 -21679838 - MLT1D LTR MaLR -93 412 263 1324 179 16 16 chr11 127103660 127103917 -21679555 + AluJo SINE Alu 1 257 -55 852 174 4 148 chr11 127103925 127104171 -21679301 + L1MB8 LINE L1 5475 5680 -486 1978 126 31 10 chr11 127104171 127104464 -21679008 - AluJb SINE Alu -13 299 1 852 174 4 148 chr11 127104464 127104487 -21678985 + L1MB8 LINE L1 5680 5705 -461 882 213 17 70 chr11 127104489 127104552 -21678920 + AluJo SINE Alu 85 150 -162 2323 115 0 0 chr11 127104552 127104857 -21678615 + AluSg SINE Alu 1 305 -5 882 213 17 70 chr11 127104857 127105023 -21678449 + AluJo SINE Alu 150 302 -10 2075 176 48 20 chr11 127105023 127105483 -21677989 + L1MB8 LINE L1 5698 6170 -8 180 0 0 0 chr11 127106484 127106504 -21676968 + (GGGA)n Simple_repeat Simple_repeat 2 21 0 217 301 175 0 chr11 127106853 127107019 -21676453 - MIR SINE MIR -10 252 58 276 155 52 0 chr11 127107022 127107080 -21676392 + AluS SINE Alu 36 83 -219 31 44 0 0 chr11 127107089 127107134 -21676338 + AT_rich Low_complexity Low_complexity 1 45 0 795 191 0 0 chr11 127107134 127107260 -21676212 - FLAM_C SINE Alu -7 126 1 337 270 40 30 chr11 127107470 127107570 -21675902 - MIR SINE MIR -151 111 11 973 266 90 53 chr11 127109231 127109781 -21673691 + L2 LINE L2 2748 3313 0 201 100 25 25 chr11 127109784 127109824 -21673648 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 291 209 33 55 chr11 127109858 127109949 -21673523 + MIR SINE MIR 26 114 -148 295 241 65 131 chr11 127109993 127110192 -21673280 + MER92C LTR ERV1 3 188 -366 352 152 0 15 chr11 127110255 127110321 -21673151 + MER92C LTR ERV1 490 554 0 2415 109 0 3 chr11 127110567 127110880 -21672592 + AluSq SINE Alu 1 312 -1 259 266 0 21 chr11 127110917 127111011 -21672461 + (TA)n Simple_repeat Simple_repeat 1 92 0 576 254 40 35 chr11 127111071 127111244 -21672228 - MIR SINE MIR -87 175 2 217 178 0 14 chr11 127112483 127112527 -21670945 - MIR SINE MIR -105 157 116 345 323 11 0 chr11 127113274 127113367 -21670105 - L2 LINE L2 -31 3241 3148 340 260 233 7 chr11 127113380 127113530 -21669942 - MIR SINE MIR -56 206 23 2115 168 103 64 chr11 127116238 127116472 -21667000 + MLT2B2 LTR ERVL 10 233 -282 2433 96 0 3 chr11 127116472 127116786 -21666686 - AluSq SINE Alu 0 313 1 2115 168 103 64 chr11 127116786 127117038 -21666434 + MLT2B2 LTR ERVL 233 515 0 377 307 108 17 chr11 127117123 127117299 -21666173 + MIR SINE MIR 52 243 -19 483 316 63 11 chr11 127117323 127117513 -21665959 - MIR SINE MIR -7 255 56 1532 158 46 74 chr11 127117547 127117832 -21665640 - AluJo SINE Alu -35 277 1 1998 104 0 4 chr11 127119424 127119683 -21663789 - AluSx SINE Alu -54 258 1 235 319 151 12 chr11 127119717 127119883 -21663589 + MER5A DNA MER1_type 1 189 0 333 208 28 38 chr11 127120035 127120141 -21663331 + MIR3 SINE MIR 101 205 -3 271 177 115 115 chr11 127120454 127120486 -21662986 + MIR SINE MIR 33 64 -144 2277 199 75 33 chr11 127120486 127120706 -21662766 + MER87 LTR ERV1 1 210 -331 1692 137 91 21 chr11 127120706 127120991 -21662481 + AluJb SINE Alu 1 305 -7 2277 199 75 33 chr11 127120991 127121288 -21662184 + MER87 LTR ERV1 210 540 -1 271 177 115 115 chr11 127121288 127121316 -21662156 + MIR SINE MIR 64 91 -117 2521 180 89 40 chr11 127121316 127121922 -21661550 + MER92B LTR ERV1 1 636 0 271 177 115 115 chr11 127121922 127121973 -21661499 + MIR SINE MIR 90 145 -63 22 0 0 0 chr11 127122554 127122576 -21660896 + AT_rich Low_complexity Low_complexity 1 22 0 316 342 46 26 chr11 127123093 127123245 -21660227 + MIR3 SINE MIR 40 194 -14 657 328 5 0 chr11 127124445 127124646 -21658826 + MIR SINE MIR 48 249 -13 1363 195 97 21 chr11 127124979 127125359 -21658113 + MLT1C LTR MaLR 58 466 -1 264 220 99 55 chr11 127125445 127125536 -21657936 + MIR SINE MIR 59 153 -109 576 228 47 0 chr11 127126860 127126987 -21656485 + L2 LINE L2 3181 3313 0 411 163 0 0 chr11 127127185 127127265 -21656207 + (TG)n Simple_repeat Simple_repeat 1 80 0 810 270 70 9 chr11 127127797 127128027 -21655445 + MIR SINE MIR 17 260 -2 1821 143 0 0 chr11 127128125 127128377 -21655095 - AluSx SINE Alu -17 295 44 1912 168 13 3 chr11 127128377 127128685 -21654787 - AluJo SINE Alu 0 312 1 1548 212 154 2 chr11 127128919 127129367 -21654105 - MLT1E2 LTR MaLR 0 626 111 2334 102 7 83 chr11 127129472 127129893 -21653579 - MER1A DNA MER1_type -140 389 1 248 255 123 19 chr11 127129893 127129999 -21653473 + MER5A DNA MER1_type 46 162 -27 192 338 26 0 chr11 127131026 127131103 -21652369 - L2 LINE L2 -208 3064 2986 272 138 246 15 chr11 127131307 127131372 -21652100 + MIR SINE MIR 37 116 -92 210 118 0 0 chr11 127131785 127131819 -21651653 + (TC)n Simple_repeat Simple_repeat 2 35 0 249 298 39 10 chr11 127132520 127132624 -21650848 - MIR3 SINE MIR -99 109 3 275 192 183 58 chr11 127133776 127133880 -21649592 - MIR3 SINE MIR -54 154 38 578 192 31 8 chr11 127134093 127134223 -21649249 + MER94 DNA DNA 1 133 -1 2378 58 0 64 chr11 127134421 127134749 -21648723 - AluY SINE Alu -4 307 1 359 338 38 13 chr11 127134765 127134922 -21648550 - L2 LINE L2 0 3313 3153 1836 141 8 4 chr11 127135045 127135308 -21648164 - AluJo SINE Alu -48 264 1 606 306 23 0 chr11 127135308 127135481 -21647991 + MIR SINE MIR 80 256 -6 662 278 171 9 chr11 127135625 127135841 -21647631 + MIR SINE MIR 2 252 -10 2186 141 0 6 chr11 127135853 127136166 -21647306 + AluSx SINE Alu 1 311 -1 2189 104 4 0 chr11 127138212 127138512 -21644960 + AluSx SINE Alu 1 301 0 2261 109 3 0 chr11 127138517 127138820 -21644652 + AluSq SINE Alu 1 304 -9 510 260 145 48 chr11 127139888 127140115 -21643357 - MIR SINE MIR -4 258 10 195 278 31 52 chr11 127140241 127140338 -21643134 - L2 LINE L2 -2 3311 3217 219 214 0 0 chr11 127140621 127140663 -21642809 - L2 LINE L2 -8 3264 3223 * 264 333 65 7 chr11 127140647 127140785 -21642687 - MIR SINE MIR -92 170 25 184 298 35 0 chr11 127141620 127141677 -21641795 - L2 LINE L2 -3209 105 47 281 325 65 8 chr11 127142113 127142236 -21641236 + L2 LINE L2 3176 3305 -8 209 211 105 35 chr11 127142292 127142349 -21641123 - L2 LINE L2 -43 3229 3169 315 0 0 0 chr11 127143687 127143722 -21639750 + (TG)n Simple_repeat Simple_repeat 2 36 0 216 347 14 0 chr11 127144395 127144467 -21639005 + MIR SINE MIR 78 150 -112 571 221 23 23 chr11 127144471 127144643 -21638829 - MER104 DNA Tc2 -3 177 6 194 302 0 0 chr11 127144646 127144699 -21638773 + MIR SINE MIR 145 197 -65 433 275 23 46 chr11 127144788 127144919 -21638553 + L2 LINE L2 3186 3313 0 2038 180 26 18 chr11 127145417 127145629 -21637843 - MLT1B LTR MaLR -4 386 168 1624 124 120 4 chr11 127145629 127145913 -21637559 - AluSg SINE Alu 0 310 1 2038 180 26 18 chr11 127145913 127146083 -21637389 - MLT1B LTR MaLR -222 168 1 442 300 53 121 chr11 127146084 127146407 -21637065 - L2 LINE L2 -5 3267 2967 336 250 0 13 chr11 127146510 127146586 -21636886 + MER96 DNA MER1_type? 101 175 0 207 186 403 16 chr11 127146762 127146886 -21636586 + MIR SINE MIR 78 249 -13 395 195 52 0 chr11 127146920 127146997 -21636475 + MIR SINE MIR 125 205 -57 208 227 23 0 chr11 127147027 127147071 -21636401 + MIR SINE MIR 106 150 -112 337 167 0 14 chr11 127147074 127147146 -21636326 - HsTC2 DNA Tc2 -2 1896 1826 346 296 52 41 chr11 127147254 127147426 -21636046 + L2 LINE L2 2430 2603 -711 1278 177 41 126 chr11 127147429 127147841 -21635631 + MLT1C LTR MaLR 91 467 0 321 318 12 0 chr11 127148694 127148779 -21634693 - MER5A DNA MER1_type -95 94 9 746 218 21 64 chr11 127148808 127148880 -21634592 + MER5A DNA MER1_type 6 80 -109 2272 125 3 0 chr11 127148880 127149183 -21634289 + AluSx SINE Alu 1 304 -8 746 218 21 64 chr11 127149183 127149298 -21634174 + MER5A DNA MER1_type 80 185 -4 328 312 102 19 chr11 127149313 127149470 -21634002 + MER5B DNA MER1_type 2 171 -7 2432 93 0 3 chr11 127150289 127150601 -21632871 - AluSq SINE Alu -2 311 1 1059 210 17 2 chr11 127150602 127150853 -21632619 + MLT2B2 LTR ERVL 216 515 0 393 305 102 17 chr11 127150938 127151115 -21632357 + MIR SINE MIR 52 243 -19 483 316 63 11 chr11 127151139 127151329 -21632143 - MIR SINE MIR -7 255 56 1532 158 46 74 chr11 127151363 127151648 -21631824 - AluJo SINE Alu -35 277 1 312 345 117 20 chr11 127152349 127152546 -21630926 - MIR SINE MIR -29 233 18 1998 104 0 4 chr11 127153241 127153500 -21629972 - AluSx SINE Alu -54 258 1 235 319 151 12 chr11 127153534 127153700 -21629772 + MER5A DNA MER1_type 1 189 0 333 208 28 38 chr11 127153853 127153959 -21629513 + MIR3 SINE MIR 101 205 -3 271 177 115 115 chr11 127154272 127154304 -21629168 + MIR SINE MIR 33 64 -144 2278 199 75 33 chr11 127154304 127154524 -21628948 + MER87 LTR ERV1 1 210 -331 1692 137 91 21 chr11 127154524 127154809 -21628663 + AluJb SINE Alu 1 305 -7 2278 199 75 33 chr11 127154809 127155106 -21628366 + MER87 LTR ERV1 210 540 -1 271 177 115 115 chr11 127155106 127155134 -21628338 + MIR SINE MIR 64 91 -117 2521 180 89 40 chr11 127155134 127155740 -21627732 + MER92B LTR ERV1 1 636 0 271 177 115 115 chr11 127155740 127155791 -21627681 + MIR SINE MIR 90 145 -63 22 0 0 0 chr11 127156370 127156392 -21627080 + AT_rich Low_complexity Low_complexity 1 22 0 316 342 46 26 chr11 127156909 127157061 -21626411 + MIR3 SINE MIR 40 194 -14 657 328 5 0 chr11 127158261 127158462 -21625010 + MIR SINE MIR 48 249 -13 1363 195 97 21 chr11 127158795 127159175 -21624297 + MLT1C LTR MaLR 58 466 -1 264 220 99 55 chr11 127159261 127159352 -21624120 + MIR SINE MIR 59 153 -109 576 228 47 0 chr11 127160677 127160804 -21622668 + L2 LINE L2 3181 3313 0 243 0 0 0 chr11 127161289 127161316 -21622156 + (T)n Simple_repeat Simple_repeat 1 27 0 201 171 0 0 chr11 127161325 127161360 -21622112 + A-rich Low_complexity Low_complexity 2 36 0 442 251 89 34 chr11 127161399 127161578 -21621894 - MER5A DNA MER1_type 0 189 1 207 265 0 44 chr11 127162585 127162653 -21620819 + GA-rich Low_complexity Low_complexity 1 65 0 1032 109 53 1 chr11 127163235 127163540 -21619932 - THE1B LTR MaLR 0 364 1 1743 208 102 54 chr11 127163590 127164070 -21619402 - MLT1D LTR MaLR 0 505 3 1352 229 15 63 chr11 127164159 127164569 -21618903 - MLT2C1 LTR ERVL -7 390 1 187 374 26 26 chr11 127164740 127164855 -21618617 + L2 LINE L2 3153 3267 -5 401 278 54 62 chr11 127165254 127165420 -21618052 - MIR3 SINE MIR -28 180 6 1144 206 61 18 chr11 127165619 127165993 -21617479 - MER66A LTR ERV1 -10 468 97 1297 246 57 35 chr11 127166440 127166963 -21616509 + MLT1E3 LTR MaLR 1 619 -5 4255 157 19 46 chr11 127166963 127167717 -21615755 + MER44D DNA MER2_type 1 605 0 2158 122 10 0 chr11 127167919 127168223 -21615249 + AluSx SINE Alu 1 307 -5 2130 124 0 7 chr11 127168235 127168542 -21614930 - AluSg SINE Alu -5 305 1 183 245 179 19 chr11 127168925 127169031 -21614441 + L2 LINE L2 2866 2988 -284 3539 135 110 29 chr11 127169831 127170335 -21613137 - LTR48 LTR ERV1 -3 784 202 1956 152 10 19 chr11 127170335 127170644 -21612828 - AluJb SINE Alu -6 306 1 3539 135 110 29 chr11 127170644 127170864 -21612608 - LTR48 LTR ERV1 -585 202 1 246 188 24 47 chr11 127170868 127170953 -21612519 - MER67B LTR ERV1 0 661 579 * 1370 221 44 42 chr11 127170934 127171318 -21612154 - MER31A LTR ERV1 -100 385 1 1151 210 137 49 chr11 127171346 127171803 -21611669 + MER39 LTR ERV1 11 685 -22 3460 192 50 28 chr11 127171867 127172572 -21610900 + L1ME1 LINE L1 4860 5603 -563 2061 144 38 19 chr11 127172572 127172940 -21610532 - THE1C LTR MaLR 0 375 1 3460 192 50 28 chr11 127172940 127173512 -21609960 + L1ME1 LINE L1 5603 6161 -5 2822 78 95 5 chr11 127173676 127174087 -21609385 + LTR7 LTR ERV1 1 448 -2 1955 134 6 61 chr11 127174144 127174457 -21609015 - AluSx SINE Alu -16 296 1 283 270 52 35 chr11 127174797 127174912 -21608560 - MIR SINE MIR -51 211 95 2000 204 67 29 chr11 127174953 127175433 -21608039 - MLT1D LTR MaLR -7 498 1 333 301 136 69 chr11 127175465 127175900 -21607572 + L2 LINE L2 2809 3272 0 2122 115 3 53 chr11 127176963 127177284 -21606188 + AluSx SINE Alu 1 305 -7 518 304 14 0 chr11 127177570 127177708 -21605764 + MER91B DNA MER1_type 40 179 -11 660 48 0 0 chr11 127178048 127178132 -21605340 + (TGGA)n Simple_repeat Simple_repeat 2 85 0 922 320 137 8 chr11 127178984 127179378 -21604094 - L2 LINE L2 0 3272 2828 2062 124 4 0 chr11 127179633 127179988 -21603484 + AluY SINE Alu 7 362 0 223 208 21 0 chr11 127180093 127180141 -21603331 - MIR SINE MIR -61 147 99 540 277 0 38 chr11 127180234 127180393 -21603079 - MER8 DNA MER2_type -60 179 27 188 279 64 64 chr11 127181731 127181871 -21601601 - L2 LINE L2 -1 3271 3132 257 312 0 0 chr11 127181968 127182045 -21601427 + MIR SINE MIR 96 172 -90 209 253 0 48 chr11 127182991 127183074 -21600398 + GA-rich Low_complexity Low_complexity 4 82 0 339 280 149 15 chr11 127183758 127183994 -21599478 - MER115 DNA AcHobo -327 366 4 2127 115 0 0 chr11 127184307 127184586 -21598886 - AluSq SINE Alu -34 279 1 322 240 75 55 chr11 127184697 127184843 -21598629 - MER20 DNA MER1_type -19 200 52 565 253 36 30 chr11 127186143 127186309 -21597163 - MIR SINE MIR -12 250 84 194 216 0 0 chr11 127186456 127186493 -21596979 - L2 LINE L2 0 3313 3277 261 325 80 41 chr11 127186673 127186827 -21596645 + MIR3 SINE MIR 6 164 -62 206 319 7 67 chr11 127187270 127187405 -21596067 + L2 LINE L2 3187 3313 0 3173 128 59 4 chr11 127187534 127188025 -21595447 + MLT2B1 LTR ERVL 1 518 -2 467 250 138 40 chr11 127188094 127188246 -21595226 - MIR SINE MIR 0 262 96 198 103 0 0 chr11 127189001 127189030 -21594442 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 460 351 34 12 chr11 127189305 127189666 -21593806 - L2 LINE L2 -184 3088 2715 702 285 35 26 chr11 127190120 127190348 -21593124 + MIR SINE MIR 23 252 -10 499 317 65 37 chr11 127190466 127190608 -21592864 + MIR SINE MIR 2 155 -107 2585 134 119 30 chr11 127190608 127191079 -21592393 - MLT2B2 LTR ERVL 0 515 3 499 317 65 37 chr11 127191079 127191182 -21592290 + MIR SINE MIR 155 254 -8 370 278 70 80 chr11 127192252 127192439 -21591033 - MIR3 SINE MIR -19 189 5 270 300 0 14 chr11 127192485 127192555 -21590917 - MIR SINE MIR -6 256 188 223 207 172 0 chr11 127192562 127192620 -21590852 + L2 LINE L2 3188 3255 -17 218 152 0 0 chr11 127192592 127192625 -21590847 + MIR SINE MIR 224 256 -6 * 335 266 231 30 chr11 127192657 127192860 -21590612 + MIR SINE MIR 16 259 -3 258 274 75 108 chr11 127192860 127193166 -21590306 - L2 LINE L2 -87 3185 2890 2294 92 0 0 chr11 127193209 127193515 -21589957 + AluSg SINE Alu 1 306 0 2043 143 41 0 chr11 127194239 127194532 -21588940 + AluSx SINE Alu 1 305 -7 346 307 10 0 chr11 127194855 127194956 -21588516 + L2 LINE L2 178 279 -3035 509 326 5 21 chr11 127195140 127195327 -21588145 + MER5A DNA MER1_type 1 184 -5 1006 219 60 151 chr11 127195334 127195965 -21587507 + MER21B LTR ERV1 27 600 -263 428 258 17 9 chr11 127195972 127196098 -21587374 + MER34 LTR ERV1 1 136 -429 * 1154 192 87 48 chr11 127196090 127196543 -21586929 + MER39 LTR ERV1 186 707 0 482 248 43 21 chr11 127196556 127196697 -21586775 + MER21B LTR ERV1 614 757 -106 322 315 44 33 chr11 127196717 127196898 -21586574 - MIR SINE MIR -70 192 10 23 33 0 0 chr11 127197122 127197152 -21586320 + AT_rich Low_complexity Low_complexity 1 30 0 389 95 16 0 chr11 127197748 127197811 -21585661 + (CA)n Simple_repeat Simple_repeat 2 65 0 22 0 0 0 chr11 127197992 127198014 -21585458 + AT_rich Low_complexity Low_complexity 1 22 0 515 307 158 0 chr11 127198024 127198226 -21585246 - MIR SINE MIR 0 262 29 299 314 76 49 chr11 127198177 127198245 -21585227 + MIR SINE MIR 10 75 -187 * 550 51 25 13 chr11 127198245 127198324 -21585148 + MADE1 DNA Mariner 1 80 0 299 314 76 49 chr11 127198324 127198440 -21585032 + MIR SINE MIR 75 199 -63 26 30 0 0 chr11 127198471 127198504 -21584968 + AT_rich Low_complexity Low_complexity 1 33 0 1803 222 117 32 chr11 127198507 127199372 -21584100 - L2 LINE L2 -2 3311 2380 1745 185 125 14 chr11 127199372 127199788 -21583684 + MLT1C LTR MaLR 1 462 -5 4525 259 164 4 chr11 127199820 127201397 -21582075 - L2 LINE L2 -991 2323 496 180 125 0 0 chr11 127201475 127201507 -21581965 + (TTA)n Simple_repeat Simple_repeat 1 32 0 247 200 165 0 chr11 127201573 127201658 -21581814 - LTR67 LTR ERVL -67 490 392 314 265 80 37 chr11 127201845 127202007 -21581465 - LTR67 LTR ERVL -386 171 3 537 240 32 26 chr11 127202298 127202452 -21581020 - MIR SINE MIR -13 249 95 448 215 103 9 chr11 127202482 127202589 -21580883 - MER91C DNA MER1_type 0 140 24 359 202 119 0 chr11 127202686 127202770 -21580702 + L2 LINE L2 3161 3254 -18 228 271 0 0 chr11 127203046 127203094 -21580378 - L2 LINE L2 -13 3259 3212 453 301 43 0 chr11 127203094 127203257 -21580215 + MIR SINE MIR 93 262 0 395 174 35 0 chr11 127203951 127204066 -21579406 + (TGGA)n Simple_repeat Simple_repeat 3 121 0 724 276 20 53 chr11 127204069 127204315 -21579157 + MIR SINE MIR 6 243 -19 * 1337 284 75 23 chr11 127204292 127204905 -21578567 - L2 LINE L2 0 3313 2679 725 315 15 0 chr11 127205415 127205615 -21577857 - MIR SINE MIR -26 236 34 552 269 143 16 chr11 127205929 127206111 -21577361 + MIR SINE MIR 1 205 -57 458 239 55 0 chr11 127206610 127206719 -21576753 + L2 LINE L2 3158 3272 0 205 260 0 0 chr11 127206737 127206787 -21576685 + CT-rich Low_complexity Low_complexity 2 51 0 442 251 89 34 chr11 127207471 127207650 -21575822 + MER5A DNA MER1_type 1 189 0 225 0 0 0 chr11 127207727 127207752 -21575720 + (A)n Simple_repeat Simple_repeat 1 25 0 238 203 203 0 chr11 127207784 127207853 -21575619 - MIR3 SINE MIR -11 197 115 1483 184 111 54 chr11 127207874 127208297 -21575175 + MLT1C LTR MaLR 21 467 0 239 294 73 37 chr11 127208298 127208407 -21575065 - MIR3 SINE MIR -91 117 5 2254 166 21 7 chr11 127210105 127210528 -21572944 - L1MB5 LINE L1 -8 6166 5738 1953 153 0 32 chr11 127210903 127211235 -21572237 + AluJo SINE Alu 1 312 0 256 332 102 48 chr11 127211356 127211690 -21571782 - L2 LINE L2 0 3272 2921 374 260 95 27 chr11 127213004 127213195 -21570277 + MIR3 SINE MIR 1 193 -49 467 250 31 44 chr11 127213583 127213743 -21569729 - L2 LINE L2 -1 3312 3155 1883 161 17 0 chr11 127213768 127213934 -21569538 - AluJb SINE Alu -12 300 125 180 0 0 0 chr11 127213934 127213954 -21569518 + (TA)n Simple_repeat Simple_repeat 2 21 0 1883 161 17 0 chr11 127213954 127214078 -21569394 - AluJb SINE Alu -187 125 5 637 277 92 0 chr11 127214155 127214350 -21569122 + MIR SINE MIR 31 243 -19 441 324 57 0 chr11 127214836 127215012 -21568460 - MIR SINE MIR -75 187 2 301 351 22 0 chr11 127215165 127215299 -21568173 + MARNA DNA Mariner 9 145 -441 288 77 0 0 chr11 127215317 127215356 -21568116 + (TTTTG)n Simple_repeat Simple_repeat 4 42 0 1558 122 54 0 chr11 127215571 127215838 -21567634 + AluSx SINE Alu 49 327 0 483 289 13 13 chr11 127215880 127216036 -21567436 - MARNA DNA Mariner -347 239 84 223 285 61 134 chr11 127216065 127216342 -21567130 - L2 LINE L2 -10 3262 3006 2152 125 7 0 chr11 127216352 127216649 -21566823 + AluSg SINE Alu 1 299 -11 282 314 126 19 chr11 127217854 127218013 -21565459 + L3b LINE CR1 1294 1469 -114 2567 24 40 0 chr11 127218079 127218375 -21565097 + AluY SINE Alu 1 308 -3 231 228 11 120 chr11 127218483 127218552 -21564920 + MIR3 SINE MIR 109 167 -41 2308 94 7 0 chr11 127218552 127218851 -21564621 - AluSg SINE Alu -9 301 1 231 228 11 120 chr11 127218851 127218873 -21564599 + MIR3 SINE MIR 167 190 -18 1837 155 14 3 chr11 127219004 127219294 -21564178 - AluSx SINE Alu -19 293 1 248 286 22 22 chr11 127220465 127220556 -21562916 + MIR SINE MIR 46 136 -126 1059 17 0 0 chr11 127220573 127220692 -21562780 - AluSg/x SINE Alu -4 308 190 239 217 58 148 chr11 127222319 127222452 -21561020 - MER5B DNA MER1_type -6 172 59 498 17 0 0 chr11 127222452 127222511 -21560961 + (CA)n Simple_repeat Simple_repeat 1 59 0 239 217 58 148 chr11 127222511 127222566 -21560906 - MER5B DNA MER1_type -119 59 1 1099 188 72 12 chr11 127222907 127223157 -21560315 - ORSL DNA AcHobo 0 275 11 1202 195 0 4 chr11 127224550 127224806 -21558666 + L1ME1 LINE L1 5655 5909 -257 3217 99 39 16 chr11 127224817 127225303 -21558169 + MER1A DNA MER1_type 33 529 0 741 238 29 54 chr11 127225303 127225580 -21557892 + L1ME1 LINE L1 5905 6174 -4 257 218 172 11 chr11 127226777 127226864 -21556608 + L2 LINE L2 3149 3249 -23 2598 71 0 0 chr11 127227219 127227527 -21555945 + AluSp SINE Alu 3 310 -3 24 32 0 0 chr11 127228003 127228034 -21555438 + AT_rich Low_complexity Low_complexity 1 31 0 237 245 0 122 chr11 127228067 127228165 -21555307 - MIR SINE MIR -33 229 144 313 257 152 0 chr11 127228173 127228278 -21555194 - L2 LINE L2 0 3313 3193 220 184 0 0 chr11 127228731 127228769 -21554703 + (TTGG)n Simple_repeat Simple_repeat 1 38 0 676 195 0 0 chr11 127229963 127230076 -21553396 - MER81 DNA DNA 0 114 2 194 260 123 14 chr11 127230363 127230436 -21553036 + MIR3 SINE MIR 4 84 -124 398 287 184 0 chr11 127230549 127230685 -21552787 - MIR SINE MIR -54 208 48 234 128 0 0 chr11 127231875 127231914 -21551558 + (TC)n Simple_repeat Simple_repeat 1 39 0 297 146 52 10 chr11 127232701 127232797 -21550675 + CT-rich Low_complexity Low_complexity 2 101 0 186 143 0 0 chr11 127233915 127233950 -21549522 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 203 349 119 8 chr11 127234635 127234761 -21548711 - L2 LINE L2 -301 2971 2832 319 305 33 40 chr11 127234826 127234977 -21548495 + L2 LINE L2 2962 3111 -161 432 319 137 27 chr11 127235038 127235367 -21548105 + L2 LINE L2 2907 3271 -1 193 247 212 24 chr11 127235440 127235525 -21547947 + L2 LINE L2 3178 3278 -35 325 263 147 11 chr11 127235693 127235788 -21547684 + L2 LINE L2 3160 3267 -5 513 315 103 15 chr11 127235917 127236247 -21547225 - L2 LINE L2 -926 2388 2030 354 311 58 53 chr11 127236493 127236683 -21546789 - MIR3 SINE MIR -11 197 7 304 282 73 18 chr11 127236687 127236797 -21546675 - MIR SINE MIR -77 131 16 217 294 44 0 chr11 127237786 127237854 -21545618 + L3b LINE CR1 1278 1348 -235 2073 132 0 4 chr11 127238008 127238289 -21545183 + AluSx SINE Alu 1 280 -32 183 80 0 0 chr11 127238289 127238314 -21545158 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 277 258 21 41 chr11 127238581 127238678 -21544794 + MIR3 SINE MIR 75 169 -39 1703 160 52 0 chr11 127240595 127240907 -21542565 - AluSx SINE Alu 0 326 1 227 209 104 15 chr11 127241419 127241486 -21541986 + L2 LINE L2 3195 3267 -5 221 276 26 13 chr11 127242831 127242907 -21540565 - L2 LINE L2 -12 3260 3184 423 155 36 24 chr11 127242912 127242929 -21540543 + (TAGA)n Simple_repeat Simple_repeat 3 18 -154 1987 146 0 44 chr11 127242929 127243244 -21540228 + AluSx SINE Alu 1 301 -11 423 155 36 24 chr11 127243244 127243394 -21540078 + (TAGA)n Simple_repeat Simple_repeat 18 172 0 651 221 21 14 chr11 127243425 127243570 -21539902 - MIR SINE MIR -68 194 49 214 254 236 48 chr11 127244206 127244371 -21539101 - L2 LINE L2 -436 2878 2683 1923 143 9 101 chr11 127244388 127244522 -21538950 - MLT1B LTR MaLR -2 388 243 1989 131 20 13 chr11 127244522 127244820 -21538652 - AluSx SINE Alu -12 300 1 1923 143 9 101 chr11 127244820 127245111 -21538361 - MLT1B LTR MaLR -147 243 2 904 132 0 22 chr11 127246556 127246692 -21536780 + FLAM_C SINE Alu 1 133 0 282 271 80 62 chr11 127246804 127247239 -21536233 + HAL1b LINE L1 70 544 -804 2231 125 6 0 chr11 127247328 127247680 -21535792 + AluSq SINE Alu 1 354 0 435 19 0 0 chr11 127247880 127247932 -21535540 + (TG)n Simple_repeat Simple_repeat 2 53 0 2558 96 174 15 chr11 127248016 127248066 -21535406 - LTR46 LTR ERV1 0 460 419 405 0 0 0 chr11 127248066 127248111 -21535361 + (CA)n Simple_repeat Simple_repeat 1 45 0 2558 96 174 15 chr11 127248111 127248457 -21535015 - LTR46 LTR ERV1 -41 419 1 189 0 0 0 chr11 127248836 127248857 -21534615 + (CA)n Simple_repeat Simple_repeat 2 22 0 4448 164 25 13 chr11 127248858 127249698 -21533774 - L1MB2 LINE L1 -34 6137 5288 568 243 128 8 chr11 127250454 127250697 -21532775 + L1ME4a LINE L1 5848 6119 -2 293 218 131 92 chr11 127251552 127251697 -21531775 - MIR SINE MIR -62 146 20 1847 165 7 0 chr11 127251908 127252211 -21531261 + AluJo SINE Alu 1 305 -7 200 286 0 0 chr11 127252315 127252371 -21531101 - MER91 DNA MER1_type -4 186 131 287 227 15 0 chr11 127252995 127253061 -21530411 - MIR3 SINE MIR -22 186 120 448 297 124 68 chr11 127253995 127254439 -21529033 + L1ME LINE L1 2141 2609 -3537 624 336 87 24 chr11 127254531 127255168 -21528304 + L1ME LINE L1 2740 3467 -2679 2496 99 0 0 chr11 127255245 127255558 -21527914 + AluSq SINE Alu 1 313 0 327 291 76 32 chr11 127255672 127255923 -21527549 + L1ME LINE L1 3742 4003 -2143 612 178 0 0 chr11 127255923 127256030 -21527442 + FLAM_C SINE Alu 36 142 -1 631 301 146 46 chr11 127256050 127256565 -21526907 + L1ME LINE L1 3991 4592 -1554 274 250 26 79 chr11 127256891 127257043 -21526429 + L1P LINE L1 4903 5046 -1100 264 329 93 24 chr11 127257274 127257520 -21525952 + L1ME LINE L1 5287 5549 -617 204 165 358 83 chr11 127257542 127257651 -21525821 + MIR SINE MIR 68 206 -56 317 24 24 0 chr11 127258060 127258102 -21525370 + (CCCCAG)n Simple_repeat Simple_repeat 5 47 0 284 221 59 0 chr11 127258164 127258232 -21525240 - MLT2F LTR ERVL -588 75 4 336 189 54 14 chr11 127258546 127258620 -21524852 + L1MC4a LINE L1 4532 4608 -1538 351 310 51 56 chr11 127258639 127258913 -21524559 - L1M LINE L1 -706 5415 5144 1612 179 0 0 chr11 127258925 127259171 -21524301 + AluJb SINE Alu 1 246 -66 5067 132 204 27 chr11 127259188 127260230 -21523242 + MER52C LTR ERV1 39 1264 -14 422 129 0 43 chr11 127260230 127260300 -21523172 + Alu SINE Alu 231 297 -14 2120 144 0 10 chr11 127260360 127260673 -21522799 + AluSx SINE Alu 1 310 -2 1518 239 40 13 chr11 127261489 127261886 -21521586 - MLT1I LTR MaLR -1 408 1 418 297 54 53 chr11 127261936 127261986 -21521486 + L1MC4a LINE L1 4795 4843 -1323 387 0 0 0 chr11 127261986 127262029 -21521443 + (TG)n Simple_repeat Simple_repeat 2 44 0 418 297 54 53 chr11 127262029 127262717 -21520755 + L1MC4a LINE L1 4843 5522 -644 399 313 151 53 chr11 127262780 127263138 -21520334 + L1MC4a LINE L1 5618 6010 -349 607 244 31 0 chr11 127263348 127263475 -21519997 - MER5A DNA MER1_type -55 134 4 455 171 90 9 chr11 127263483 127263594 -21519878 - MLT1J2 LTR MaLR -330 120 1 386 257 162 0 chr11 127263662 127263767 -21519705 + L2 LINE L2 3182 3303 -10 1600 211 54 14 chr11 127264366 127264717 -21518755 + MLT1A1 LTR MaLR 1 365 0 344 269 128 20 chr11 127267209 127267358 -21516114 + MIR SINE MIR 24 188 -74 398 251 80 65 chr11 127267588 127267787 -21515685 - MIR3 SINE MIR -6 202 1 784 240 11 17 chr11 127269290 127269469 -21514003 + MER45A DNA AcHobo 1 178 0 352 240 73 10 chr11 127270762 127270858 -21512614 - MIR SINE MIR -47 215 114 327 266 156 28 chr11 127271038 127271147 -21512325 - L2 LINE L2 0 3313 3191 225 83 0 0 chr11 127271482 127271518 -21511954 + (TG)n Simple_repeat Simple_repeat 2 37 0 332 246 158 0 chr11 127272320 127272434 -21511038 - MIR SINE MIR -80 182 51 316 331 24 24 chr11 127272961 127273088 -21510384 - MIR SINE MIR -70 192 66 615 299 47 81 chr11 127273303 127273647 -21509825 - L2 LINE L2 0 3272 2941 907 318 136 82 chr11 127273713 127274022 -21509450 - L2 LINE L2 -469 2845 2554 2148 142 3 3 chr11 127274022 127274331 -21509141 + AluSx SINE Alu 1 309 -3 907 318 136 82 chr11 127274331 127275774 -21507698 - L2 LINE L2 -760 2554 911 1512 230 89 40 chr11 127275774 127276229 -21507243 + MLT2B1 LTR ERVL 2 484 -36 282 29 0 0 chr11 127276229 127276264 -21507208 + (CA)n Simple_repeat Simple_repeat 2 36 0 1512 230 89 40 chr11 127276264 127276303 -21507169 + MLT2B1 LTR ERVL 484 520 0 907 318 136 82 chr11 127276303 127277094 -21506378 - L2 LINE L2 -2403 911 164 596 174 8 53 chr11 127277135 127277218 -21506254 + Tigger2 DNA MER2_type 3 79 -2639 2198 107 40 0 chr11 127277218 127277516 -21505956 + AluSg SINE Alu 1 310 0 596 174 8 53 chr11 127277516 127277564 -21505908 + Tigger2 DNA MER2_type 79 128 -2590 1965 149 28 36 chr11 127277567 127277712 -21505760 + Tigger2 DNA MER2_type 2349 2494 -214 197 65 32 0 chr11 127277712 127277743 -21505729 + (AATTG)n Simple_repeat Simple_repeat 2 33 0 1540 134 52 45 chr11 127277743 127278006 -21505466 - AluJb SINE Alu -27 285 21 1965 149 28 36 chr11 127278006 127278227 -21505245 + Tigger2 DNA MER2_type 2492 2708 0 692 269 79 35 chr11 127278233 127278636 -21504836 + MLT1J2 LTR MaLR 20 396 -13 220 344 62 0 chr11 127279058 127279154 -21504318 - L2 LINE L2 -1 3271 3170 303 293 38 19 chr11 127279702 127279859 -21503613 + CT-rich Low_complexity Low_complexity 5 164 0 210 143 0 0 chr11 127280304 127280339 -21503133 + (CAG)n Simple_repeat Simple_repeat 3 37 0 473 290 50 23 chr11 127280492 127280713 -21502759 - MIR SINE MIR -3 259 33 315 285 143 100 chr11 127281333 127281636 -21501836 + L3 LINE CR1 900 1229 -348 2501 72 7 0 chr11 127281636 127281941 -21501531 + AluY SINE Alu 1 307 -4 315 285 143 100 chr11 127281941 127282076 -21501396 + L3 LINE CR1 1229 1357 -220 217 240 20 0 chr11 127282326 127282376 -21501096 + L3 LINE CR1 1422 1472 -105 478 293 108 6 chr11 127282948 127283115 -21500357 + MIR SINE MIR 2 185 -77 416 254 41 8 chr11 127283149 127283271 -21500201 + MIR3 SINE MIR 82 207 -1 1046 225 167 31 chr11 127283935 127284389 -21499083 + LTR33 LTR ERVL 1 516 -5 320 339 62 0 chr11 127284621 127284751 -21498721 - L2 LINE L2 -1 3271 3134 634 321 108 36 chr11 127285843 127286378 -21497094 - L2 LINE L2 -7 3265 2697 2240 122 0 0 chr11 127286953 127287248 -21496224 + AluSx SINE Alu 1 295 -17 270 344 11 0 chr11 127287847 127287940 -21495532 + L1M4 LINE L1 794 887 -5655 724 255 21 48 chr11 127287984 127288522 -21494950 + L1M4 LINE L1 893 1580 -4962 287 262 125 0 chr11 127288661 127288864 -21494608 - MIR3 SINE MIR -22 240 5 210 309 57 32 chr11 127289379 127289502 -21493970 - MIR SINE MIR -127 135 10 282 248 68 90 chr11 127290741 127290874 -21492598 - L2 LINE L2 -5 3267 3138 280 250 0 28 chr11 127290891 127290963 -21492509 + MIR SINE MIR 1 70 -192 1902 130 7 21 chr11 127290964 127291248 -21492224 + AluSx SINE Alu 1 280 -32 191 341 82 29 chr11 127291283 127291355 -21492117 + MIR SINE MIR 65 132 -130 2401 68 7 7 chr11 127291355 127291649 -21491823 + AluY SINE Alu 2 295 -16 191 341 82 29 chr11 127291649 127291746 -21491726 + MIR SINE MIR 132 243 -19 2637 64 0 10 chr11 127293754 127294067 -21489405 + AluY SINE Alu 1 310 -1 362 323 152 10 chr11 127294128 127294326 -21489146 + MIR SINE MIR 37 262 0 444 67 0 0 chr11 127296169 127296229 -21487243 + Alu SINE Alu 235 294 -17 1603 190 18 73 chr11 127297725 127298120 -21485352 - MLT1A2 LTR MaLR 0 374 2 468 51 0 0 chr11 127298692 127298751 -21484721 + (CA)n Simple_repeat Simple_repeat 1 59 0 210 261 72 0 chr11 127299015 127299084 -21484388 + MIR3 SINE MIR 123 196 -12 323 85 0 0 chr11 127299965 127300012 -21483460 + L1MC1 LINE L1 5941 5987 -1798 183 42 0 0 chr11 127300013 127300037 -21483435 + (GGGA)n Simple_repeat Simple_repeat 2 25 0 319 172 31 0 chr11 127300102 127300166 -21483306 + L1MC1 LINE L1 6255 6320 -13 2215 125 0 0 chr11 127300184 127300479 -21482993 + AluSx SINE Alu 5 299 -13 550 211 0 11 chr11 127300506 127300639 -21482833 + L1MD2 LINE L1 5719 5847 -455 262 304 0 13 chr11 127300647 127300726 -21482746 + MIR SINE MIR 48 125 -83 228 248 124 57 chr11 127301769 127301874 -21481598 + L2 LINE L2 3197 3308 -5 946 188 61 0 chr11 127301997 127302194 -21481278 + MER3 DNA MER1_type 1 209 0 610 224 201 23 chr11 127302275 127302489 -21480983 + MIR SINE MIR 1 252 -10 224 306 0 0 chr11 127302548 127302610 -21480862 - MIR SINE MIR 0 262 201 36762 30 23 2 chr11 127302615 127307965 -21475507 + L1PA2 LINE L1 577 6046 -109 266 283 88 0 chr11 127309217 127309330 -21474142 - MIR SINE MIR -64 144 22 423 275 21 21 chr11 127309387 127309529 -21473943 + L2 LINE L2 3169 3310 -3 381 102 0 0 chr11 127309567 127309626 -21473846 + (GGGA)n Simple_repeat Simple_repeat 2 60 0 289 209 0 30 chr11 127310462 127310529 -21472943 - L2 LINE L2 -1 3271 3207 181 280 0 0 chr11 127310682 127310732 -21472740 + MIR SINE MIR 3 52 -210 255 235 123 0 chr11 127310755 127310836 -21472636 + MIR SINE MIR 168 258 -4 819 148 35 0 chr11 127311261 127311403 -21472069 - MER20 DNA MER1_type 0 219 73 719 138 9 0 chr11 127311571 127311687 -21471785 - AluSg SINE Alu -192 118 2 382 252 69 106 chr11 127311777 127312051 -21471421 - MLT1L LTR MaLR -296 319 56 819 167 8 0 chr11 127312076 127312208 -21471264 + FLAM_C SINE Alu 1 133 0 251 331 8 47 chr11 127312288 127312328 -21471144 - L2 LINE L2 -223 3049 3009 2113 128 42 28 chr11 127312328 127312687 -21470785 - THE1B LTR MaLR 0 364 1 251 331 8 47 chr11 127312687 127312773 -21470699 - L2 LINE L2 -263 3009 2928 577 251 45 62 chr11 127316064 127316110 -21467362 - MER5B DNA MER1_type 0 178 133 2030 153 10 0 chr11 127316110 127316404 -21467068 - AluJb SINE Alu -15 297 1 577 251 45 62 chr11 127316404 127316536 -21466936 - MER5B DNA MER1_type -45 133 3 295 348 118 6 chr11 127317414 127317587 -21465885 - MIR SINE MIR -55 207 19 196 200 60 0 chr11 127318231 127318281 -21465191 + L2 LINE L2 3005 3057 -215 393 22 0 0 chr11 127318998 127319044 -21464428 + (TGAA)n Simple_repeat Simple_repeat 3 48 0 476 320 98 16 chr11 127319670 127319864 -21463608 + MIR SINE MIR 2 211 -51 370 247 70 9 chr11 127319875 127320010 -21463462 - MIR SINE MIR -62 146 13 229 356 0 0 chr11 127321032 127321105 -21462367 - L3 LINE CR1 -99 1478 1406 429 320 43 23 chr11 127321190 127321446 -21462026 - L2 LINE L2 -58 3255 2995 214 270 90 0 chr11 127321430 127321519 -21461953 - L2 LINE L2 -835 2479 2383 * 228 354 42 0 chr11 127322507 127322603 -21460869 + L2 LINE L2 3209 3308 -5 1233 194 155 64 chr11 127322858 127323022 -21460450 + MLT1E2 LTR MaLR 25 173 -453 2057 138 0 0 chr11 127323022 127323298 -21460174 + AluSx SINE Alu 7 282 -30 201 94 0 0 chr11 127323298 127323330 -21460142 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 1233 194 155 64 chr11 127323330 127323663 -21459809 + MLT1E2 LTR MaLR 172 568 -58 1064 190 35 4 chr11 127323712 127323944 -21459528 - L1MB3 LINE L1 -1 6182 5944 238 190 52 0 chr11 127323944 127324002 -21459470 + MLT1E2 LTR MaLR 591 651 -3 386 212 118 94 chr11 127324099 127324232 -21459240 - MIR SINE MIR -25 237 98 1831 173 17 0 chr11 127324232 127324527 -21458945 + AluSx SINE Alu 1 300 -12 386 212 118 94 chr11 127324527 127324563 -21458909 - MIR SINE MIR -164 98 64 197 302 16 78 chr11 127324975 127325104 -21458368 - MIR3 SINE MIR -46 162 42 328 276 110 16 chr11 127325240 127325367 -21458105 + MIR3 SINE MIR 22 160 -48 2145 128 7 0 chr11 127326770 127327060 -21456412 + AluSx SINE Alu 1 292 -20 426 293 23 15 chr11 127327965 127328098 -21455374 - MIR SINE MIR -110 152 19 413 285 56 28 chr11 127328223 127328402 -21455070 + MIR SINE MIR 33 216 -46 204 67 0 0 chr11 127328415 127328445 -21455027 + (CAT)n Simple_repeat Simple_repeat 1 30 0 1352 198 72 58 chr11 127329403 127329762 -21453710 - MLT1A1 LTR MaLR -1 364 1 248 269 0 0 chr11 127330038 127330090 -21453382 + C-rich Low_complexity Low_complexity 6 57 0 296 324 54 0 chr11 127330434 127330545 -21452927 - MIR SINE MIR -66 196 80 497 351 6 0 chr11 127331382 127331553 -21451919 - MIR3 SINE MIR -7 201 30 193 340 50 30 chr11 127331745 127331845 -21451627 - L2 LINE L2 -21 3251 3150 291 368 16 0 chr11 127331851 127331976 -21451496 - L2 LINE L2 0 3313 3187 * 539 272 121 67 chr11 127331975 127332098 -21451374 - MIR SINE MIR -4 258 143 2473 88 0 0 chr11 127332098 127332406 -21451066 + AluY SINE Alu 1 308 -3 539 272 121 67 chr11 127332406 127332521 -21450951 - MIR SINE MIR -119 143 7 397 330 54 57 chr11 127333350 127333720 -21449752 - L2 LINE L2 -5 3267 2899 1188 248 91 65 chr11 127333988 127334484 -21448988 - MLT1J LTR MaLR -2 509 1 180 152 0 109 chr11 127334931 127334977 -21448495 + L2 LINE L2 3012 3052 -220 376 263 38 30 chr11 127335285 127335418 -21448054 + MER117 DNA MER1_type 64 197 0 208 244 54 100 chr11 127336858 127337019 -21446453 - MIR3 SINE MIR -16 192 34 221 313 96 26 chr11 127337443 127337558 -21445914 + L2 LINE L2 3144 3266 -6 234 0 0 0 chr11 127338476 127338502 -21444970 + (CA)n Simple_repeat Simple_repeat 2 27 0 389 280 66 25 chr11 127339003 127339246 -21444226 + L1MEd LINE L1 939 1191 -4928 519 329 97 79 chr11 127339275 127339415 -21444057 + HAL1b LINE L1 237 373 -1975 831 148 0 37 chr11 127339415 127339550 -21443922 + FLAM_C SINE Alu 3 132 -1 519 329 97 79 chr11 127339550 127339902 -21443570 + HAL1b LINE L1 373 1738 -610 291 304 109 7 chr11 127340066 127340204 -21443268 - MLT1I LTR MaLR -3 406 255 724 322 87 93 chr11 127340602 127341227 -21442245 + HAL1b LINE L1 158 385 -963 831 148 0 37 chr11 127341227 127341362 -21442110 + FLAM_C SINE Alu 3 132 -1 724 322 87 93 chr11 127341362 127341714 -21441758 + HAL1b LINE L1 385 738 -610 469 290 132 40 chr11 127341878 127342150 -21441322 - MLT1I LTR MaLR -3 406 110 2341 66 0 19 chr11 127342307 127342624 -21440848 - AluY SINE Alu 0 311 1 3462 206 48 65 chr11 127342969 127343740 -21439732 + L1ME3A LINE L1 7 790 -5616 6370 71 2 0 chr11 127343740 127344872 -21438600 - L1PA7 LINE L1 -3 6151 4982 3462 206 48 65 chr11 127344872 127344920 -21438552 + L1ME3A LINE L1 790 837 -5569 2136 110 0 7 chr11 127344920 127345219 -21438253 - AluSx SINE Alu -15 297 1 3462 206 48 65 chr11 127345219 127345279 -21438193 + L1ME3A LINE L1 837 897 -5509 186 118 0 0 chr11 127345279 127345313 -21438159 + (TA)n Simple_repeat Simple_repeat 2 35 0 3462 206 48 65 chr11 127345313 127346238 -21437234 + L1ME3A LINE L1 897 2042 -4364 5476 211 41 19 chr11 127346267 127347020 -21436452 + L1M4 LINE L1 3553 4287 -1859 2229 105 0 0 chr11 127347020 127347324 -21436148 + AluSq SINE Alu 1 304 -9 5476 211 41 19 chr11 127347324 127347633 -21435839 + L1M4 LINE L1 4287 4588 -1558 2156 188 31 82 chr11 127347633 127348181 -21435291 - MLT2B1 LTR ERVL 0 520 1 5476 211 41 19 chr11 127348181 127348526 -21434946 + L1M4 LINE L1 4588 4993 -1153 2198 116 3 0 chr11 127348526 127348837 -21434635 + AluSx SINE Alu 1 312 0 1201 224 49 35 chr11 127348837 127348962 -21434510 + L1MD2 LINE L1 6007 6129 -230 1479 120 87 0 chr11 127348962 127349204 -21434268 + AluSx SINE Alu 39 301 -11 1201 224 49 35 chr11 127349204 127349426 -21434046 + L1MD2 LINE L1 6129 6359 0 870 230 68 72 chr11 127349461 127349640 -21433832 + MLT1J LTR MaLR 1 179 -271 2356 79 0 0 chr11 127349640 127349943 -21433529 - AluSq SINE Alu -10 303 1 870 230 68 72 chr11 127349943 127350160 -21433312 + MLT1J LTR MaLR 179 385 -65 888 285 102 18 chr11 127350281 127350975 -21432497 + L1ME3A LINE L1 2534 3299 -3107 243 88 0 0 chr11 127350975 127351009 -21432463 + (TA)n Simple_repeat Simple_repeat 1 34 0 888 285 102 18 chr11 127351009 127351079 -21432393 + L1ME3A LINE L1 3299 3362 -3044 364 122 61 0 chr11 127351120 127351202 -21432270 + L1MC5 LINE L1 7152 7238 -723 837 299 65 29 chr11 127351390 127351976 -21431496 + L1ME3A LINE L1 4833 5439 -967 890 214 26 10 chr11 127351981 127352173 -21431299 - MLT1C LTR MaLR 0 467 273 1028 204 115 26 chr11 127352275 127352579 -21430893 - MLT1C LTR MaLR -136 331 1 540 206 82 117 chr11 127352583 127352715 -21430757 - MLT1C LTR MaLR -219 248 113 2328 118 33 33 chr11 127352715 127353079 -21430393 - THE1B LTR MaLR 0 364 1 540 206 82 117 chr11 127353079 127353097 -21430375 - MLT1C LTR MaLR -354 113 96 2450 161 47 0 chr11 127353097 127353500 -21429972 - MSTB LTR MaLR -4 422 1 540 206 82 117 chr11 127353500 127353605 -21429867 - MLT1C LTR MaLR -371 96 1 5380 180 49 98 chr11 127353606 127354987 -21428485 - MLT1C-int LTR MaLR -1 1370 58 1738 207 76 27 chr11 127354987 127355432 -21428040 - MLT1C LTR MaLR 0 467 1 351 294 59 33 chr11 127355508 127355767 -21427705 + L1ME3A LINE L1 5516 5789 -763 1090 269 82 13 chr11 127355769 127356251 -21427221 + L2 LINE L2 2742 3269 -44 605 332 45 0 chr11 127356347 127356549 -21426923 - MIR SINE MIR -49 213 3 1112 273 112 7 chr11 127356583 127357001 -21426471 + LTR16B LTR ERVL 3 464 0 1850 228 58 45 chr11 127357029 127357135 -21426337 + L1ME3A LINE L1 5844 5947 -483 1464 202 3 3 chr11 127357135 127357437 -21426035 + AluJb SINE Alu 1 302 -10 1850 228 58 45 chr11 127357437 127357657 -21425815 + L1ME3A LINE L1 5947 6163 -267 1473 185 3 31 chr11 127357657 127357976 -21425496 - AluJb SINE Alu -2 310 1 1850 228 58 45 chr11 127357976 127358222 -21425250 + L1ME3A LINE L1 6163 6424 -6 671 167 194 0 chr11 127358514 127358658 -21424814 + MER96 DNA MER1_type? 1 172 -3 1972 119 14 0 chr11 127358974 127359251 -21424221 + AluSx SINE Alu 10 290 -22 1949 183 17 12 chr11 127359259 127359604 -21423868 - MLT1A1 LTR MaLR -18 347 1 414 0 0 0 chr11 127360206 127360252 -21423220 + (CA)n Simple_repeat Simple_repeat 2 47 0 211 372 0 6 chr11 127360456 127360620 -21422852 + (CAGG)n Simple_repeat Simple_repeat 2 164 0 * 385 335 0 0 chr11 127360513 127360692 -21422780 + (TATG)n Simple_repeat Simple_repeat 1 179 0 244 331 181 24 chr11 127360746 127360912 -21422560 - L2 LINE L2 -177 3095 2904 336 283 86 33 chr11 127361778 127361930 -21421542 + MIR SINE MIR 59 218 -44 355 294 103 27 chr11 127362566 127362712 -21420760 + MIR3 SINE MIR 27 183 -25 * 518 266 79 61 chr11 127362700 127363042 -21420430 + L2 LINE L2 2949 3296 -17 364 177 182 20 chr11 127363558 127363670 -21419802 - MIR SINE MIR -63 145 32 231 36 0 0 chr11 127363714 127363742 -21419730 + (GA)n Simple_repeat Simple_repeat 2 29 0 674 265 101 9 chr11 127364196 127364415 -21419057 - Charlie8 DNA MER1_type -2141 276 38 2528 147 35 103 chr11 127364418 127364585 -21418887 - L1MA10 LINE L1 0 6334 6157 243 0 0 0 chr11 127364585 127364612 -21418860 + (TG)n Simple_repeat Simple_repeat 1 27 0 2528 147 35 103 chr11 127364612 127365063 -21418409 - L1MA10 LINE L1 -177 6157 5758 334 258 175 17 chr11 127365944 127366064 -21417408 + MIR3 SINE MIR 3 141 -67 444 174 65 0 chr11 127366911 127367003 -21416469 - MIR SINE MIR -58 150 53 552 327 42 0 chr11 127367081 127367249 -21416223 + L2 LINE L2 3139 3313 0 188 103 0 0 chr11 127367255 127367284 -21416188 - L2 LINE L2 -217 3055 3027 247 220 0 0 chr11 127368149 127368199 -21415273 - L2 LINE L2 -13 3259 3210 359 298 15 15 chr11 127368626 127368810 -21414662 + GA-rich Low_complexity Low_complexity 1 184 0 306 294 138 47 chr11 127368978 127369318 -21414154 - L2 LINE L2 -24 3248 2878 * 316 281 7 30 chr11 127369291 127369446 -21414026 + MIR SINE MIR 58 262 0 2108 196 50 76 chr11 127369668 127370249 -21413223 + MLT1F1 LTR MaLR 1 566 -1 447 231 50 8 chr11 127370598 127370719 -21412753 + MIR SINE MIR 47 172 -90 255 284 0 64 chr11 127371052 127371161 -21412311 + MIR SINE MIR 90 191 -71 288 259 7 21 chr11 127371499 127371642 -21411830 + (TGGA)n Simple_repeat Simple_repeat 2 142 0 180 0 0 0 chr11 127371653 127371673 -21411799 + (GGAA)n Simple_repeat Simple_repeat 2 21 0 437 319 83 13 chr11 127372178 127372335 -21411137 + MIR3 SINE MIR 20 187 -21 402 243 45 9 chr11 127373599 127373710 -21409762 - MIR3 SINE MIR -12 196 82 706 195 92 6 chr11 127373928 127374102 -21409370 + MIR SINE MIR 74 262 0 271 263 183 15 chr11 127374902 127375039 -21408433 + L3b LINE CR1 1303 1462 -121 264 130 0 0 chr11 127375385 127375431 -21408041 + (CA)n Simple_repeat Simple_repeat 2 47 0 366 262 102 32 chr11 127376071 127376258 -21407214 + MIR SINE MIR 22 221 -41 487 248 45 15 chr11 127376393 127376526 -21406946 - MIR SINE MIR -98 164 28 372 22 0 0 chr11 127376634 127376679 -21406793 + (CA)n Simple_repeat Simple_repeat 1 45 0 293 322 67 54 chr11 127376925 127377074 -21406398 - MIR SINE MIR -43 165 15 188 169 117 91 chr11 127377262 127377339 -21406133 - L2 LINE L2 -3 3269 3191 299 339 68 0 chr11 127377558 127377676 -21405796 - MIR SINE MIR -130 132 7 2121 107 20 3 chr11 127377915 127378214 -21405258 - AluSx SINE Alu -8 304 1 470 299 35 30 chr11 127378535 127378736 -21404736 + L2 LINE L2 2605 2806 -508 411 199 199 122 chr11 127378968 127379289 -21404183 + MLT1I LTR MaLR 64 409 0 195 281 183 113 chr11 127379293 127379567 -21403905 + L2 LINE L2 2980 3272 0 232 338 0 0 chr11 127380460 127380540 -21402932 + L1M1 LINE L1 5503 5582 -723 389 233 151 49 chr11 127380635 127380878 -21402594 + L1ME4a LINE L1 5673 5963 -158 23 78 0 0 chr11 127380882 127380933 -21402539 + AT_rich Low_complexity Low_complexity 1 51 0 370 255 50 111 chr11 127380954 127381203 -21402269 + L1ME4a LINE L1 5802 6032 -89 1970 112 0 29 chr11 127381203 127381516 -21401956 - AluSg SINE Alu -6 304 1 370 255 50 111 chr11 127381516 127381564 -21401908 + L1ME4a LINE L1 6032 6081 -40 194 281 40 131 chr11 127381564 127381763 -21401709 + MIR3 SINE MIR 22 202 -6 1243 229 129 28 chr11 127382225 127382588 -21400884 - MLT1J2 LTR MaLR -12 438 39 189 311 164 39 chr11 127382918 127383715 -21399757 + L2 LINE L2 1891 2787 -527 485 218 207 0 chr11 127385271 127385445 -21398027 + L2 LINE L2 2645 2854 -460 312 286 97 40 chr11 127385434 127385609 -21397863 + L2 LINE L2 3124 3308 -5 * 462 191 198 19 chr11 127386264 127386426 -21397046 - L2 LINE L2 -1076 2238 2048 913 207 0 107 chr11 127386461 127386732 -21396740 + HAL1 LINE L1 133 374 -2133 312 265 73 66 chr11 127386738 127386874 -21396598 + MIR SINE MIR 94 230 -32 * 984 266 35 7 chr11 127386847 127387136 -21396336 + L2 LINE L2 1783 2079 -1235 2994 233 101 52 chr11 127387136 127387912 -21395560 + HAL1 LINE L1 387 1239 -1268 1100 163 6 0 chr11 127387912 127388084 -21395388 + FAM SINE Alu 3 175 0 2994 233 101 52 chr11 127388084 127388454 -21395018 + HAL1 LINE L1 1239 1589 -918 391 174 14 0 chr11 127388454 127388523 -21394949 - MLT1I LTR MaLR 0 409 340 5693 203 52 26 chr11 127388633 127390771 -21392701 + L1M3f LINE L1 1251 3450 -4073 38577 80 13 13 chr11 127390775 127396913 -21386559 + L1PA6 LINE L1 11 6152 -2 1402 158 88 6 chr11 127396899 127397337 -21386135 + L1M3f LINE L1 3410 3875 -3690 * 1893 127 0 10 chr11 127398299 127398599 -21384873 - AluSq SINE Alu -16 297 1 199 286 8 105 chr11 127399118 127399251 -21384221 - L2 LINE L2 -208 3064 2945 2115 113 0 3 chr11 127399638 127399948 -21383524 + AluSq SINE Alu 1 309 -4 238 111 0 0 chr11 127399948 127399984 -21383488 - MIR SINE MIR -131 131 96 2013 110 11 0 chr11 127400764 127401046 -21382426 + AluSx SINE Alu 1 285 -27 360 0 0 0 chr11 127401046 127401086 -21382386 + (CA)n Simple_repeat Simple_repeat 2 41 0 232 295 98 31 chr11 127401332 127401440 -21382032 + MIR SINE MIR 35 149 -64 591 208 48 16 chr11 127401855 127401980 -21381492 - FLAM_A SINE Alu -4 129 1 374 120 0 27 chr11 127401986 127402061 -21381411 - L1MB7 LINE L1 -9 6175 6103 937 100 23 0 chr11 127402567 127402730 -21380742 + AluSg/x SINE Alu 150 315 0 276 196 28 131 chr11 127402924 127403031 -21380441 + FLAM_C SINE Alu 35 130 -3 656 279 134 26 chr11 127403273 127403578 -21379894 + MLT1J1 LTR MaLR 1 338 -108 411 285 58 35 chr11 127404028 127404200 -21379272 - L1ME LINE L1 -362 5800 5625 4440 130 83 48 chr11 127404334 127405303 -21378169 + L1MB7 LINE L1 5202 6184 0 2071 104 21 0 chr11 127405314 127405603 -21377869 + AluSg SINE Alu 1 295 -15 2307 188 73 11 chr11 127405606 127406058 -21377414 - MLT1F LTR MaLR -59 483 4 944 207 157 5 chr11 127406088 127406305 -21377167 - MIR SINE MIR 0 262 13 1734 118 98 11 chr11 127406394 127406681 -21376791 + AluSx SINE Alu 1 312 0 246 264 0 0 chr11 127406818 127406871 -21376601 - L2 LINE L2 -976 2338 2286 2136 89 0 14 chr11 127407235 127407528 -21375944 - AluSx SINE Alu -23 289 1 12698 169 31 8 chr11 127407530 127409678 -21373794 - L1 LINE L1 -1034 5112 2893 754 234 6 6 chr11 127409678 127409853 -21373619 - L1PA16 LINE L1 -1 6165 5991 12698 169 31 8 chr11 127409853 127410269 -21373203 - L1 LINE L1 -3253 2893 2488 401 266 35 9 chr11 127410793 127410906 -21372566 - L2 LINE L2 -3 3310 3195 612 225 0 0 chr11 127411188 127411348 -21372124 + CT-rich Low_complexity Low_complexity 2 161 0 690 200 6 11 chr11 127411365 127411545 -21371927 + CT-rich Low_complexity Low_complexity 2 180 0 282 241 0 0 chr11 127411546 127411600 -21371872 + polypyrimidine Low_complexity Low_complexity 4 57 0 * 404 237 23 40 chr11 127411584 127411822 -21371650 + (CCCTA)n Simple_repeat Simple_repeat 1 233 0 200 268 71 18 chr11 127412769 127412825 -21370647 - L2 LINE L2 -12 3260 3202 287 315 19 19 chr11 127412896 127413004 -21370468 - MIR SINE MIR -126 136 29 464 0 18 0 chr11 127413006 127413062 -21370410 + (TTTTG)n Simple_repeat Simple_repeat 1 57 0 2036 98 0 4 chr11 127413086 127413362 -21370110 - AluSc SINE Alu -34 275 1 246 228 0 18 chr11 127413711 127413768 -21369704 + CT-rich Low_complexity Low_complexity 3 58 0 24 0 0 0 chr11 127414198 127414222 -21369250 + AT_rich Low_complexity Low_complexity 1 24 0 2309 75 0 0 chr11 127414224 127414518 -21368954 + AluY SINE Alu 1 294 -17 612 211 32 0 chr11 127414590 127414713 -21368759 + L2 LINE L2 3187 3313 0 2039 119 0 0 chr11 127414743 127415036 -21368436 + AluSx SINE Alu 10 302 -10 282 276 153 102 chr11 127415376 127415451 -21368021 - MIR SINE MIR -45 217 147 2039 116 10 3 chr11 127415451 127415754 -21367718 + AluSq SINE Alu 1 305 -8 1969 139 0 13 chr11 127415756 127416066 -21367406 + AluSp SINE Alu 1 306 -7 282 276 153 102 chr11 127416066 127416183 -21367289 - MIR SINE MIR -115 147 12 183 143 114 0 chr11 127416289 127416324 -21367148 - L2 LINE L2 -3 3269 3231 266 294 96 29 chr11 127416827 127416963 -21366509 - MIR3 SINE MIR -30 178 34 205 214 54 0 chr11 127417806 127417862 -21365610 + L2 LINE L2 3255 3313 0 457 281 7 36 chr11 127417865 127418004 -21365468 - MIR3 SINE MIR -54 154 20 2033 114 0 0 chr11 127418145 127418454 -21365018 + AluSx SINE Alu 1 309 0 2215 99 0 0 chr11 127419726 127420030 -21363442 + AluSx SINE Alu 1 304 -8 2211 101 0 0 chr11 127420881 127421178 -21362294 - AluSq SINE Alu -16 297 1 199 286 8 105 chr11 127421697 127421830 -21361642 - L2 LINE L2 -208 3064 2945 2284 93 0 3 chr11 127422217 127422529 -21360943 + AluSq SINE Alu 1 311 -2 227 276 0 0 chr11 127422748 127422806 -21360666 + L2 LINE L2 3206 3263 -9 245 370 11 0 chr11 127422871 127422963 -21360509 + MIR SINE MIR 59 151 -111 227 315 62 20 chr11 127423402 127423548 -21359924 - MIR3 SINE MIR -27 181 30 2481 52 0 0 chr11 127423793 127424101 -21359371 - AluY SINE Alu -2 309 2 201 295 200 29 chr11 127424310 127424520 -21358952 - L3 LINE CR1 -191 1386 1141 349 292 201 0 chr11 127424553 127424697 -21358775 - MIR SINE MIR -28 234 62 1702 166 3 0 chr11 127424835 127425125 -21358347 - AluSx SINE Alu -1 311 21 348 268 134 0 chr11 127425169 127425281 -21358191 + MIR SINE MIR 60 186 -76 2087 114 0 7 chr11 127427780 127428070 -21355402 + AluSx SINE Alu 1 288 -24 198 0 0 0 chr11 127428076 127428098 -21355374 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 2811 179 39 65 chr11 127428355 127428600 -21354872 + MLT1E2 LTR MaLR 4 254 -372 2248 110 0 0 chr11 127428600 127428909 -21354563 + AluSp SINE Alu 1 309 -4 2811 179 39 65 chr11 127428909 127429299 -21354173 + MLT1E2 LTR MaLR 254 623 -3 1770 176 30 21 chr11 127429372 127429701 -21353771 - MLT1A1 LTR MaLR -33 332 1 2392 79 0 0 chr11 127432351 127432654 -21350818 + AluSp SINE Alu 1 303 -10 297 289 40 69 chr11 127432711 127432884 -21350588 - L2 LINE L2 -173 3099 2932 368 365 181 12 chr11 127432919 127433687 -21349785 - L2 LINE L2 -459 2855 1958 7937 13 5 0 chr11 127434080 127435540 -21347932 + L1PA3 LINE L1 4690 6153 -2 1887 107 24 3 chr11 127435617 127435908 -21347564 - AluY SINE Alu -14 297 1 2321 109 0 3 chr11 127436470 127436772 -21346700 - AluSx SINE Alu -11 301 1 234 218 127 70 chr11 127437476 127437618 -21345854 + MIR SINE MIR 103 252 -10 22 0 0 0 chr11 127437776 127437798 -21345674 + AT_rich Low_complexity Low_complexity 1 22 0 745 213 60 136 chr11 127438086 127438745 -21344727 - L2 LINE L2 -159 3154 2535 859 252 0 10 chr11 127438749 127438955 -21344517 - MIR SINE MIR -25 237 34 1389 248 127 36 chr11 127438983 127439512 -21343960 - L2 LINE L2 -849 2465 1889 252 309 148 27 chr11 127439546 127439695 -21343777 - L2 LINE L2 -1408 1906 1740 193 279 81 18 chr11 127439694 127439805 -21343667 + L2 LINE L2 1878 1995 -1319 * 200 176 0 0 chr11 127439805 127439839 -21343633 + CT-rich Low_complexity Low_complexity 1 34 0 1659 176 25 4 chr11 127439839 127440117 -21343355 - AluJb SINE Alu -24 288 5 5772 157 23 14 chr11 127440130 127441154 -21342318 - L1MC1 LINE L1 -14 6319 5286 483 324 176 21 chr11 127441154 127441784 -21341688 + L2 LINE L2 1983 2710 -604 206 360 0 13 chr11 127441856 127441931 -21341541 + L2 LINE L2 2700 2773 -541 388 223 43 0 chr11 127441954 127442048 -21341424 + MER112 DNA MER1_type 1 98 -162 724 195 0 0 chr11 127442049 127442172 -21341300 - FLAM_A SINE Alu -10 132 10 1473 161 75 36 chr11 127442191 127442470 -21341002 - AluJo SINE Alu -22 290 1 371 205 98 9 chr11 127442473 127442585 -21340887 + MER112 DNA MER1_type 90 211 -49 206 355 73 9 chr11 127442923 127443033 -21340439 + L2 LINE L2 3180 3296 -17 420 251 206 29 chr11 127443058 127443474 -21339998 + L2 LINE L2 2742 3313 0 25 23 0 23 chr11 127443585 127443597 -21339875 + AT_rich Low_complexity Low_complexity 1 12 -30 1983 121 13 23 chr11 127443597 127443902 -21339570 - AluJo SINE Alu -10 302 1 25 23 0 23 chr11 127443902 127443932 -21339540 + AT_rich Low_complexity Low_complexity 12 42 0 1612 192 3 14 chr11 127443935 127444222 -21339250 - AluJo SINE Alu -16 296 13 284 323 6 63 chr11 127444252 127444410 -21339062 - MIR SINE MIR -66 196 48 211 353 59 0 chr11 127445704 127445840 -21337632 + L2 LINE L2 3165 3308 -5 2135 116 20 0 chr11 127445888 127446181 -21337291 - AluSx SINE Alu -13 299 1 825 152 0 36 chr11 127446255 127446393 -21337079 - FLAM_C SINE Alu 0 133 1 898 171 98 73 chr11 127447524 127447770 -21335702 - MIR SINE MIR -1 261 10 1483 165 30 56 chr11 127448740 127448891 -21334581 + AluJo SINE Alu 2 143 -169 1875 87 11 47 chr11 127448891 127449166 -21334306 + AluY SINE Alu 35 299 -12 1483 165 30 56 chr11 127449166 127449317 -21334155 + AluJo SINE Alu 143 296 -16 2359 99 0 0 chr11 127449571 127449865 -21333607 - AluSx SINE Alu -18 294 1 386 271 168 14 chr11 127451518 127451732 -21331740 + MIR SINE MIR 16 262 0 225 261 0 14 chr11 127451764 127451833 -21331639 + CT-rich Low_complexity Low_complexity 3 70 0 2242 103 0 0 chr11 127452345 127452671 -21330801 - AluSx SINE Alu 0 326 1 289 271 229 16 chr11 127454013 127454201 -21329271 + MIR SINE MIR 4 231 -31 24 0 0 0 chr11 127454312 127454336 -21329136 + AT_rich Low_complexity Low_complexity 1 24 0 689 325 59 41 chr11 127454378 127454833 -21328639 - L2 LINE L2 0 3313 2808 2241 97 3 7 chr11 127454833 127455132 -21328340 + AluSx SINE Alu 1 298 -14 689 325 59 41 chr11 127455132 127455373 -21328099 - L2 LINE L2 -505 2808 2573 657 244 85 15 chr11 127455441 127455642 -21327830 + MIR SINE MIR 2 216 -46 222 37 0 0 chr11 127460624 127460651 -21322821 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 761 152 104 126 chr11 127460744 127461014 -21322458 - MER5C DNA MER1_type -54 270 7 989 330 125 35 chr11 127461217 127462146 -21321326 + L2 LINE L2 1869 2880 -434 207 0 0 0 chr11 127462209 127462232 -21321240 + (TTTTG)n Simple_repeat Simple_repeat 5 27 0 429 297 153 18 chr11 127462625 127462854 -21320618 + L2 LINE L2 2948 3207 -65 2387 91 0 0 chr11 127466780 127467078 -21316394 + AluSg SINE Alu 1 298 -12 1468 169 88 4 chr11 127469991 127470264 -21313208 + AluJb SINE Alu 1 296 -16 2265 89 3 17 chr11 127470429 127470731 -21312741 - AluSx SINE Alu -13 299 2 602 256 184 14 chr11 127472339 127472452 -21311020 + MIR SINE MIR 2 94 -168 1785 153 67 22 chr11 127472452 127472811 -21310661 - THE1C LTR MaLR 0 375 1 602 256 184 14 chr11 127472811 127472920 -21310552 + MIR SINE MIR 94 262 0 200 274 247 7 chr11 127473191 127473271 -21310201 + MER5A DNA MER1_type 9 69 -120 2389 72 7 0 chr11 127473271 127473563 -21309909 - AluSg SINE Alu -16 294 1 200 274 247 7 chr11 127473563 127473628 -21309844 + MER5A DNA MER1_type 69 189 0 476 234 69 74 chr11 127473648 127473823 -21309649 + MER5A DNA MER1_type 16 189 0 321 89 0 0 chr11 127475201 127475246 -21308226 + (CAG)n Simple_repeat Simple_repeat 3 47 0 232 310 124 18 chr11 127476080 127476193 -21307279 + MIR3 SINE MIR 30 154 -54 570 236 229 22 chr11 127476948 127477262 -21306210 + L3 LINE CR1 1146 1524 -53 2602 53 0 0 chr11 127477311 127477613 -21305859 - AluY SINE Alu -9 302 1 507 202 60 36 chr11 127477615 127477783 -21305689 - MIR SINE MIR -24 238 67 2280 108 16 0 chr11 127478426 127478733 -21304739 - AluSx SINE Alu 0 312 1 194 296 92 51 chr11 127478951 127479049 -21304423 - L2 LINE L2 -48 3224 3123 1893 156 0 7 chr11 127479175 127479464 -21304008 - AluJo SINE Alu -25 287 1 210 296 96 22 chr11 127480418 127480553 -21302919 - MIR3 SINE MIR -61 147 3 278 331 39 15 chr11 127480980 127481110 -21302362 - MIR SINE MIR -122 140 8 2141 116 41 0 chr11 127482511 127482803 -21300669 - AluSx SINE Alu -8 304 1 482 338 206 4 chr11 127483320 127483826 -21299646 - L2 LINE L2 -661 2653 2046 1698 154 0 0 chr11 127484559 127484812 -21298660 - AluSx SINE Alu -10 302 50 1029 154 31 51 chr11 127485079 127485169 -21298303 - MER3 DNA MER1_type -18 191 101 2221 61 20 102 chr11 127485169 127485511 -21297961 - AluYb8 SINE Alu -4 314 1 1029 154 31 51 chr11 127485511 127485615 -21297857 - MER3 DNA MER1_type -108 101 1 256 373 7 7 chr11 127486484 127486634 -21296838 + MIR SINE MIR 94 243 -19 192 217 0 0 chr11 127488241 127488287 -21295185 + T-rich Low_complexity Low_complexity 1 46 0 530 48 68 0 chr11 127488830 127488933 -21294539 + (TA)n Simple_repeat Simple_repeat 2 111 0 2121 128 10 10 chr11 127490599 127490911 -21292561 + AluSx SINE Alu 1 312 0 1398 166 36 28 chr11 127491125 127491378 -21292094 + AluJo SINE Alu 1 255 -57 2050 183 69 25 chr11 127493574 127494022 -21289450 - MLT1D LTR MaLR -37 468 1 204 262 113 78 chr11 127494051 127494192 -21289280 - MIR SINE MIR -99 163 18 329 224 63 81 chr11 127494310 127494484 -21288988 + MIR3 SINE MIR 38 208 0 370 233 82 26 chr11 127494570 127494741 -21288731 - MIR SINE MIR -51 211 35 2317 107 0 10 chr11 127498432 127498740 -21284732 + AluSx SINE Alu 1 305 -7 346 287 0 0 chr11 127499256 127499357 -21284115 + MIR SINE MIR 46 146 -62 351 329 43 0 chr11 127499527 127499667 -21283805 - MIR SINE MIR 0 262 117 215 184 0 0 chr11 127499983 127500021 -21283451 - MIR SINE MIR -115 147 110 483 252 45 0 chr11 127500880 127500991 -21282481 + MIR SINE MIR 72 187 -75 2173 130 18 0 chr11 127501204 127501535 -21281937 + MER1B DNA MER1_type 1 337 0 2314 100 6 10 chr11 127501566 127502051 -21281421 + AluSx SINE Alu 1 312 0 365 280 77 48 chr11 127502857 127503025 -21280447 + MIR3 SINE MIR 15 187 -21 195 215 62 31 chr11 127503078 127503143 -21280329 + MIR SINE MIR 82 148 -60 234 191 21 0 chr11 127503225 127503272 -21280200 + CT-rich Low_complexity Low_complexity 2 49 0 253 325 77 18 chr11 127504372 127504541 -21278931 + MIR SINE MIR 30 208 -54 1999 114 25 4 chr11 127504787 127505067 -21278405 + AluSx SINE Alu 1 286 -26 243 0 0 0 chr11 127505067 127505094 -21278378 + (GA)n Simple_repeat Simple_repeat 2 28 0 240 293 154 10 chr11 127505141 127505262 -21278210 - MIR SINE MIR -65 143 35 207 279 139 0 chr11 127506306 127506385 -21277087 - MIR3 SINE MIR -37 171 82 769 228 70 9 chr11 127507033 127507248 -21276224 - MIR SINE MIR -8 254 27 371 191 0 0 chr11 127508045 127508108 -21275364 - MER2 DNA MER2_type -1 344 282 2573 42 0 36 chr11 127508116 127508423 -21275049 + AluY SINE Alu 1 296 -15 180 0 0 0 chr11 127508423 127508443 -21275029 + (TA)n Simple_repeat Simple_repeat 2 21 0 22 0 0 0 chr11 127508443 127508465 -21275007 + AT_rich Low_complexity Low_complexity 1 22 0 827 160 0 0 chr11 127508474 127508599 -21274873 + FLAM_C SINE Alu 1 125 -18 1586 152 22 7 chr11 127508609 127508624 -21274848 - MER2 DNA MER2_type -71 274 261 2184 125 0 0 chr11 127508624 127508920 -21274552 + AluSx SINE Alu 1 296 -16 1586 152 22 7 chr11 127508920 127509174 -21274298 - MER2 DNA MER2_type -84 261 1 207 279 25 0 chr11 127509214 127509293 -21274179 - MIR SINE MIR -57 151 71 274 224 203 49 chr11 127510634 127510777 -21272695 + MIR3 SINE MIR 30 194 -14 873 244 4 9 chr11 127511379 127511609 -21271863 - MLT2F LTR ERVL -296 367 139 228 122 0 0 chr11 127512285 127512326 -21271146 + (CAG)n Simple_repeat Simple_repeat 2 42 0 327 267 47 26 chr11 127512748 127512938 -21270534 - L2 LINE L2 0 3313 3138 276 333 129 20 chr11 127513638 127513839 -21269633 + MIR SINE MIR 31 253 -9 347 250 15 118 chr11 127514234 127514281 -21269191 + L1MC4 LINE L1 6583 6633 -1409 2506 64 6 13 chr11 127514281 127514594 -21268878 + AluSq SINE Alu 1 311 -2 347 250 15 118 chr11 127514594 127514682 -21268790 + L1MC4 LINE L1 6633 6704 -1338 412 244 35 0 chr11 127514683 127514769 -21268703 - L1MC4 LINE L1 -1339 6703 6615 342 290 21 11 chr11 127514725 127514818 -21268654 + L1MC4 LINE L1 6611 6704 -1338 * 423 258 17 58 chr11 127514809 127514929 -21268543 - L1MC4 LINE L1 -1339 6703 6589 466 303 56 14 chr11 127514932 127515074 -21268398 - L1MC4 LINE L1 -1339 6703 6556 303 208 30 99 chr11 127515067 127515168 -21268304 + L1MC3 LINE L1 6554 6647 -1138 * 335 288 0 63 chr11 127515086 127515246 -21268226 - L1MC4 LINE L1 -1339 6703 6589 * 337 279 0 72 chr11 127515209 127515320 -21268152 + L1MC4 LINE L1 6600 6702 -1340 186 174 0 0 chr11 127515321 127515367 -21268105 + (TA)n Simple_repeat Simple_repeat 2 47 0 2075 162 8 6 chr11 127515552 127515916 -21267556 + MLT1A1 LTR MaLR 1 365 0 524 286 72 92 chr11 127516030 127516477 -21266995 + LTR67 LTR ERVL 116 553 -4 2262 115 0 3 chr11 127516477 127516773 -21266699 + AluSx SINE Alu 1 295 -17 234 0 0 0 chr11 127517774 127517800 -21265672 + (T)n Simple_repeat Simple_repeat 1 26 0 2029 115 14 4 chr11 127517801 127518080 -21265392 + AluSx SINE Alu 31 312 0 2179 145 3 0 chr11 127518095 127518406 -21265066 + AluJb SINE Alu 1 312 0 723 144 20 14 chr11 127518439 127518585 -21264887 - L1MB4 LINE L1 -23 6157 6011 * 1301 192 8 11 chr11 127518573 127518833 -21264639 - L1MB4 LINE L1 -450 5730 5472 1830 183 121 24 chr11 127519892 127520307 -21263165 + MLT1F LTR MaLR 88 542 0 199 236 146 0 chr11 127520308 127520363 -21263109 + L2 LINE L2 3251 3313 0 280 343 63 14 chr11 127520374 127520517 -21262955 - L3 LINE CR1 -118 1459 1310 399 277 30 0 chr11 127520748 127520849 -21262623 + L2 LINE L2 3210 3313 0 228 165 72 0 chr11 127520852 127520949 -21262523 + (TA)n Simple_repeat Simple_repeat 2 105 0 357 23 0 0 chr11 127520953 127520996 -21262476 - AluY SINE Alu -257 44 2 3133 236 116 39 chr11 127520999 127521365 -21262107 - HAL1 LINE L1 -1302 1205 869 2555 73 0 0 chr11 127521365 127521666 -21261806 + AluY SINE Alu 1 301 -10 3133 236 116 39 chr11 127521666 127522129 -21261343 - HAL1 LINE L1 -1638 869 443 795 237 5 11 chr11 127522129 127522319 -21261153 + MER91B DNA MER1_type 1 189 -1 3133 236 116 39 chr11 127522319 127522501 -21260971 - HAL1 LINE L1 -2064 443 277 2147 126 16 10 chr11 127522501 127522811 -21260661 - AluJb SINE Alu 0 312 1 3133 236 116 39 chr11 127522811 127522915 -21260557 - HAL1 LINE L1 -2230 277 1 2157 106 10 7 chr11 127523089 127523407 -21260065 + AluSx SINE Alu 1 312 0 243 241 84 12 chr11 127523408 127523491 -21259981 + L1ME LINE L1 5647 5735 -386 1945 142 9 49 chr11 127523493 127523818 -21259654 + AluSx SINE Alu 1 312 0 335 281 163 25 chr11 127524727 127524930 -21258542 + MIR SINE MIR 22 252 -10 420 271 64 91 chr11 127525535 127525714 -21257758 - L1MEd LINE L1 -3532 2850 2668 2256 121 0 16 chr11 127525714 127526027 -21257445 - AluSg SINE Alu -2 308 1 420 271 64 91 chr11 127526027 127526286 -21257186 - L1MEd LINE L1 -3714 2668 2424 675 218 71 59 chr11 127526290 127526424 -21257048 - MIR SINE MIR 0 262 122 1948 164 3 22 chr11 127526424 127526742 -21256730 + AluJb SINE Alu 1 312 0 675 218 71 59 chr11 127526742 127526846 -21256626 - MIR SINE MIR -140 122 21 725 198 0 0 chr11 127527055 127527181 -21256291 + FLAM_C SINE Alu 1 126 -17 2120 107 22 0 chr11 127527292 127527594 -21255878 - AluSx SINE Alu 0 311 4 661 289 72 27 chr11 127527637 127527990 -21255482 + L1MD3 LINE L1 7096 7558 -437 2047 133 6 19 chr11 127527990 127528305 -21255167 + AluJo SINE Alu 1 311 -1 1408 283 129 38 chr11 127528402 127528525 -21254947 - HAL1 LINE L1 -1786 721 611 2037 143 14 0 chr11 127528525 127528812 -21254660 - AluJo SINE Alu -21 291 1 1408 283 129 38 chr11 127528812 127529349 -21254123 - HAL1 LINE L1 -1896 611 1 329 244 23 35 chr11 127529616 127529702 -21253770 - L2 LINE L2 -5 3308 3224 1715 139 36 18 chr11 127529704 127530011 -21253461 + AluJo SINE Alu 1 312 0 239 143 0 0 chr11 127530048 127530090 -21253382 + MER116 DNA Mariner 1 42 -38 551 278 97 39 chr11 127530234 127530714 -21252758 - L1MEd LINE L1 -4653 1731 1207 2302 116 0 0 chr11 127530714 127531016 -21252456 - AluSx SINE Alu -10 302 1 437 54 0 0 chr11 127531021 127531077 -21252395 - Alu SINE Alu -260 58 3 350 228 154 13 chr11 127531083 127531232 -21252240 - L1MEd LINE L1 -5055 1317 1148 1718 123 3 110 chr11 127531271 127531624 -21251848 + AluJb SINE Alu 1 319 0 2123 98 9 44 chr11 127531925 127532241 -21251231 + AluSx SINE Alu 3 307 -5 1698 237 75 55 chr11 127532658 127532721 -21250751 + L1MC4 LINE L1 7102 7162 -880 1558 125 28 103 chr11 127532721 127533042 -21250430 - AluJb SINE Alu -5 297 1 1698 237 75 55 chr11 127533042 127533753 -21249719 + L1MC4 LINE L1 7162 7891 -151 337 269 0 46 chr11 127533878 127533986 -21249486 - LTR33A LTR ERVL 0 523 421 270 283 226 0 chr11 127534149 127534255 -21249217 - MLT2E LTR ERVL -456 172 43 3423 173 39 38 chr11 127534415 127534759 -21248713 - L1MB3 LINE L1 -1 6182 5840 2350 128 0 0 chr11 127534759 127535071 -21248401 - AluSx SINE Alu 0 312 1 3423 173 39 38 chr11 127535071 127535464 -21248008 - L1MB3 LINE L1 -343 5840 5444 2115 113 38 0 chr11 127535495 127535788 -21247684 + AluSx SINE Alu 1 304 -8 926 221 137 121 chr11 127535890 127535966 -21247506 + MLT1J LTR MaLR 1 74 -437 3393 143 20 36 chr11 127535966 127536625 -21246847 - L1MB8 LINE L1 -6 6172 5525 926 221 137 121 chr11 127536625 127536765 -21246707 + MLT1J LTR MaLR 74 210 -301 2488 83 3 0 chr11 127536765 127537066 -21246406 + AluSp SINE Alu 1 302 -11 926 221 137 121 chr11 127537066 127537351 -21246121 + MLT1J LTR MaLR 210 511 0 434 304 148 25 chr11 127537412 127537649 -21245823 - MLT1J2 LTR MaLR -118 332 67 2060 153 0 7 chr11 127537696 127538003 -21245469 - AluSx SINE Alu -7 305 1 483 282 23 35 chr11 127538012 127538186 -21245286 + L2 LINE L2 2139 2310 -1004 511 365 49 18 chr11 127538455 127538781 -21244691 + L2 LINE L2 2329 2664 -650 300 327 91 0 chr11 127538869 127538979 -21244493 + MIR3 SINE MIR 37 156 -52 227 253 172 30 chr11 127538976 127539075 -21244397 - L2 LINE L2 0 3313 3201 * 1657 211 43 11 chr11 127539226 127539626 -21243846 + MLT1J LTR MaLR 1 459 -52 361 188 0 0 chr11 127539655 127539719 -21243753 + MLT1J LTR MaLR 127 190 -321 342 232 0 91 chr11 127539730 127539829 -21243643 + L1MC4 LINE L1 6614 6703 -1339 231 167 0 0 chr11 127539830 127539866 -21243606 + MLT1J LTR MaLR 476 511 0 212 296 111 15 chr11 127540005 127540140 -21243332 - L2 LINE L2 -636 2678 2531 29 60 0 0 chr11 127545313 127545363 -21238109 + GC_rich Low_complexity Low_complexity 1 50 0 616 234 78 0 chr11 127546522 127546663 -21236809 - MIR3 SINE MIR 0 208 57 184 328 117 16 chr11 127547049 127547177 -21236295 + L2 LINE L2 3131 3271 -42 808 293 120 36 chr11 127549038 127549397 -21234075 + L3 LINE CR1 1178 1566 -11 180 0 0 0 chr11 127549397 127549417 -21234055 + (T)n Simple_repeat Simple_repeat 1 20 0 2890 205 101 68 chr11 127551213 127551241 -21232231 - HAL1 LINE L1 -694 1813 1787 2390 69 0 3 chr11 127551241 127551547 -21231925 - AluSg SINE Alu -5 305 1 2890 205 101 68 chr11 127551547 127552624 -21230848 - HAL1 LINE L1 -720 1787 671 409 289 29 0 chr11 127552643 127552747 -21230725 + HAL1 LINE L1 234 340 -2167 474 249 47 47 chr11 127552856 127553025 -21230447 - HAL1 LINE L1 -1859 648 480 446 240 39 10 chr11 127553051 127553155 -21230317 - HAL1 LINE L1 -2167 340 234 28 79 0 0 chr11 127553170 127553233 -21230239 + AT_rich Low_complexity Low_complexity 1 63 0 1266 20 7 0 chr11 127553233 127553380 -21230092 - L1PA5 LINE L1 -11 6143 5996 240 200 17 50 chr11 127553893 127553953 -21229519 - MIR SINE MIR -12 250 193 869 242 149 39 chr11 127554954 127555310 -21228162 - L2 LINE L2 0 3313 2919 2052 102 13 10 chr11 127555596 127555899 -21227573 - AluSx SINE Alu -8 304 1 195 74 0 0 chr11 127557511 127557538 -21225934 + MIR SINE MIR 124 150 -112 266 114 45 0 chr11 127557551 127557595 -21225877 - MIR SINE MIR -112 150 105 1355 95 0 0 chr11 127557618 127557797 -21225675 - AluSg/x SINE Alu 0 312 134 2202 93 10 0 chr11 127557797 127558097 -21225375 - AluSg SINE Alu -7 303 1 1085 173 99 11 chr11 127558923 127559195 -21224277 + L1MA9 LINE L1 6017 6312 0 430 259 92 0 chr11 127559304 127559435 -21224037 + MIR SINE MIR 69 211 -51 305 291 219 26 chr11 127559751 127559952 -21223520 - MIR SINE MIR 0 262 22 207 100 0 0 chr11 127560046 127560076 -21223396 + (TGGG)n Simple_repeat Simple_repeat 3 32 0 317 272 9 35 chr11 127560908 127561022 -21222450 - MIR SINE MIR -6 256 146 1669 182 57 32 chr11 127561073 127561474 -21221998 + MLT1C LTR MaLR 53 463 -4 615 230 0 33 chr11 127561624 127561776 -21221696 + MIR SINE MIR 34 180 -82 533 315 67 89 chr11 127561863 127562209 -21221263 - L2 LINE L2 -1 3312 2960 1592 169 0 4 chr11 127562209 127562476 -21220996 + AluJb SINE Alu 29 294 -18 2521 50 0 0 chr11 127562482 127562784 -21220688 + AluY SINE Alu 1 302 -9 533 315 67 89 chr11 127562784 127562982 -21220490 - L2 LINE L2 -358 2955 2770 2179 97 3 19 chr11 127563197 127563506 -21219966 - AluSx SINE Alu -8 304 1 2111 98 0 38 chr11 127564239 127564554 -21218918 - AluY SINE Alu -8 303 1 284 343 38 0 chr11 127564555 127564660 -21218812 + L3 LINE CR1 243 351 -1226 1127 273 117 16 chr11 127564681 127565245 -21218227 - L1ME4a LINE L1 -1 6120 5500 1539 176 7 4 chr11 127565257 127565564 -21217908 - AluJb SINE Alu 0 319 12 2346 82 7 0 chr11 127565650 127565954 -21217518 - AluY SINE Alu -5 306 1 1956 141 0 0 chr11 127566054 127566360 -21217112 - AluJb SINE Alu -6 306 1 270 316 0 0 chr11 127566404 127566480 -21216992 + L3 LINE CR1 1012 1087 -490 750 265 139 5 chr11 127566563 127566778 -21216694 - MIR SINE MIR -2 260 17 593 313 70 0 chr11 127566855 127567056 -21216416 + MIR SINE MIR 47 261 -1 553 282 172 11 chr11 127567066 127567339 -21216133 + L3 LINE CR1 1260 1576 -1 689 260 125 10 chr11 127569175 127569375 -21214097 + MIR SINE MIR 25 247 -15 305 244 43 89 chr11 127569584 127569768 -21213704 + MIR SINE MIR 19 183 -79 263 311 74 15 chr11 127570915 127571050 -21212422 - L1ME4a LINE L1 -13 6108 5966 387 239 26 71 chr11 127571200 127571355 -21212117 - L1ME4a LINE L1 -349 5772 5625 269 282 0 0 chr11 127571380 127571451 -21212021 - L1ME4a LINE L1 -482 5639 5569 21 0 0 0 chr11 127571538 127571559 -21211913 + AT_rich Low_complexity Low_complexity 1 21 0 1964 96 54 0 chr11 127571914 127572194 -21211278 + AluSx SINE Alu 1 295 -17 851 265 45 20 chr11 127572838 127573083 -21210389 + MIR SINE MIR 9 259 -3 2247 99 0 13 chr11 127574374 127574686 -21208786 + AluSx SINE Alu 3 310 -2 1889 114 23 33 chr11 127575664 127575963 -21207509 + AluSx SINE Alu 1 296 -16 626 275 48 6 chr11 127576524 127576691 -21206781 + L2 LINE L2 1431 1604 -1710 237 209 0 0 chr11 127576698 127576741 -21206731 - Charlie1 DNA MER1_type 0 2761 2719 2002 88 4 4 chr11 127576741 127577014 -21206458 - AluSx SINE Alu -19 293 21 1569 168 62 0 chr11 127577063 127577337 -21206135 - AluSx SINE Alu -21 291 1 3195 163 127 4 chr11 127577337 127578059 -21205413 - Charlie1 DNA MER1_type -36 2725 1915 835 175 74 67 chr11 127578059 127578356 -21205116 - L1ME LINE L1 -5197 922 624 1155 224 29 40 chr11 127578408 127578757 -21204715 - L1ME LINE L1 -1888 4192 3848 * 1201 165 36 46 chr11 127578742 127578917 -21204555 - L1ME LINE L1 -3212 2868 2696 1909 136 3 7 chr11 127578917 127579218 -21204254 + AluJb SINE Alu 1 300 -12 1201 165 36 46 chr11 127579218 127579345 -21204127 - L1ME LINE L1 -3384 2696 2569 1687 228 52 63 chr11 127579419 127580067 -21203405 - L1ME LINE L1 -5170 900 260 502 284 34 11 chr11 127580090 127580266 -21203206 - L1ME LINE L1 -5881 189 10 251 270 0 16 chr11 127580269 127580332 -21203140 - L1ME LINE L1 -5810 309 248 801 180 0 0 chr11 127580334 127580462 -21203010 + FLAM_A SINE Alu 1 128 -5 317 301 87 40 chr11 127580952 127581017 -21202455 - MIR3 SINE MIR -12 196 135 2383 60 0 10 chr11 127581017 127581315 -21202157 + AluY SINE Alu 1 295 -16 317 301 87 40 chr11 127581315 127581422 -21202050 - MIR3 SINE MIR -73 135 16 2228 84 3 7 chr11 127581619 127581916 -21201556 - AluSq SINE Alu -17 296 1 246 367 36 82 chr11 127582006 127582336 -21201136 - L2 LINE L2 -51 3221 2907 360 312 123 36 chr11 127582391 127582667 -21200805 - L2 LINE L2 -469 2845 2546 367 300 112 9 chr11 127582719 127582942 -21200530 - L2 LINE L2 -1350 1964 1719 456 336 160 50 chr11 127582942 127584073 -21199399 + L2 LINE L2 1983 3272 0 2104 109 16 0 chr11 127584253 127584556 -21198916 - AluSg SINE Alu -2 308 1 24 53 0 0 chr11 127585055 127585093 -21198379 + AT_rich Low_complexity Low_complexity 1 38 0 546 277 93 27 chr11 127585342 127585871 -21197601 + L1ME LINE L1 4910 5471 -762 1696 125 98 11 chr11 127585937 127586224 -21197248 - AluSx SINE Alu 0 312 1 944 207 157 5 chr11 127586313 127586530 -21196942 + MIR SINE MIR 13 262 0 2307 188 73 11 chr11 127586560 127587012 -21196460 + MLT1F LTR MaLR 4 483 -59 2071 104 21 0 chr11 127587015 127587304 -21196168 - AluSg SINE Alu -15 295 1 4440 130 83 48 chr11 127587315 127588284 -21195188 - L1MB7 LINE L1 0 6184 5202 411 285 58 35 chr11 127588418 127588590 -21194882 + L1ME LINE L1 5625 5800 -362 656 279 134 26 chr11 127589040 127589345 -21194127 - MLT1J1 LTR MaLR -108 338 1 276 196 28 131 chr11 127589587 127589694 -21193778 - FLAM_C SINE Alu -3 130 35 1007 100 23 0 chr11 127589888 127590051 -21193421 - AluSg/x SINE Alu 0 313 148 350 120 0 27 chr11 127590557 127590632 -21192840 + L1MB7 LINE L1 6103 6175 -9 562 224 48 0 chr11 127590638 127590763 -21192709 + FLAM_A SINE Alu 1 131 -2 210 295 98 31 chr11 127591178 127591286 -21192186 - MIR SINE MIR -64 144 35 324 0 0 0 chr11 127591532 127591568 -21191904 + (TG)n Simple_repeat Simple_repeat 2 37 0 2164 110 11 0 chr11 127591568 127591850 -21191622 - AluSx SINE Alu -27 285 1 412 198 115 83 chr11 127592630 127592663 -21190809 + MIR SINE MIR 96 126 -136 2582 77 0 0 chr11 127592663 127592975 -21190497 - AluSq SINE Alu -1 312 1 412 198 115 83 chr11 127592975 127593098 -21190374 + MIR SINE MIR 126 257 -5 405 0 0 0 chr11 127594620 127594665 -21188807 + (TG)n Simple_repeat Simple_repeat 1 45 0 264 115 0 154 chr11 127594845 127594923 -21188549 - L3 LINE CR1 -2 1575 1510 2522 143 2 45 chr11 127595448 127595662 -21187810 - L1PB4 LINE L1 -2 6154 5932 2040 134 0 33 chr11 127595662 127595967 -21187505 - AluSx SINE Alu -15 297 3 2522 143 2 45 chr11 127595967 127596242 -21187230 - L1PB4 LINE L1 -224 5932 5686 283 292 308 0 chr11 127596413 127596608 -21186864 - L3 LINE CR1 -320 1257 1003 1440 142 32 9 chr11 127596638 127596857 -21186615 - AluJo SINE Alu -88 224 1 24 32 0 0 chr11 127596865 127596896 -21186576 + AT_rich Low_complexity Low_complexity 1 31 0 2448 102 0 3 chr11 127597045 127597359 -21186113 - AluSq SINE Alu 0 313 1 287 333 46 51 chr11 127597359 127597554 -21185918 - L3 LINE CR1 -597 980 787 1986 163 0 0 chr11 127597770 127598064 -21185408 + AluJb SINE Alu 1 294 -18 362 265 152 8 chr11 127598372 127598504 -21184968 - MIR SINE MIR -2 260 110 373 283 92 120 chr11 127598965 127599333 -21184139 + L2 LINE L2 2915 3272 0 524 192 0 58 chr11 127600704 127600824 -21182648 + MER94 DNA DNA 15 127 -7 192 280 129 32 chr11 127604565 127604658 -21178814 + MIR SINE MIR 75 176 -86 211 330 126 0 chr11 127604981 127605084 -21178388 - L2 LINE L2 -605 2709 2594 229 306 107 0 chr11 127606745 127606867 -21176605 - MIR SINE MIR -62 146 54 204 40 0 0 chr11 127607782 127607807 -21175665 + (CCCCCA)n Simple_repeat Simple_repeat 5 29 0 359 279 108 16 chr11 127607852 127607981 -21175491 + MIR SINE MIR 32 172 -90 389 310 150 40 chr11 127609912 127610286 -21173186 - L2 LINE L2 -54 3218 2804 259 276 45 60 chr11 127611243 127611377 -21172095 + MIR SINE MIR 35 166 -96 3388 55 0 28 chr11 127611558 127612015 -21171457 + MLT2A1 LTR ERVL 1 444 0 346 257 95 0 chr11 127613468 127613573 -21169899 + MIR SINE MIR 31 145 -63 219 125 0 0 chr11 127613604 127613644 -21169828 + (TCCA)n Simple_repeat Simple_repeat 1 40 0 388 295 7 36 chr11 127613646 127613785 -21169687 - L2 LINE L2 -3 3310 3176 221 83 28 0 chr11 127613786 127613822 -21169650 + (TAA)n Simple_repeat Simple_repeat 1 37 0 206 325 108 0 chr11 127614479 127614599 -21168873 + L2 LINE L2 2919 3051 -221 216 305 0 0 chr11 127614751 127614810 -21168662 + L2 LINE L2 3194 3252 -20 337 274 0 12 chr11 127614886 127614970 -21168502 - MIR SINE MIR -114 148 66 598 96 0 139 chr11 127614970 127615028 -21168444 + AluJb SINE Alu 81 118 -194 2107 119 0 7 chr11 127615028 127615340 -21168132 + AluSg SINE Alu 1 310 0 598 96 0 139 chr11 127615340 127615395 -21168077 + AluJb SINE Alu 118 179 -133 1009 172 31 0 chr11 127615397 127615431 -21168041 + AluJo SINE Alu 85 116 -196 192 97 0 0 chr11 127615431 127615462 -21168010 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1009 172 31 0 chr11 127615462 127615590 -21167882 + AluJo SINE Alu 116 252 -60 548 318 113 61 chr11 127616251 127616807 -21166665 + MLT1K LTR MaLR 2 586 -2 351 0 0 0 chr11 127616830 127616869 -21166603 + (CA)n Simple_repeat Simple_repeat 2 40 0 2425 100 7 0 chr11 127616977 127617287 -21166185 + AluSx SINE Alu 1 312 0 260 321 9 27 chr11 127618066 127618178 -21165294 + C-rich Low_complexity Low_complexity 1 110 0 1699 176 30 21 chr11 127619199 127619528 -21163944 + MLT1A1 LTR MaLR 1 332 -33 2701 176 39 65 chr11 127619601 127619991 -21163481 - MLT1E2 LTR MaLR -3 623 254 2408 110 0 0 chr11 127619991 127620300 -21163172 - AluSp SINE Alu -4 309 1 2701 176 39 65 chr11 127620300 127620545 -21162927 - MLT1E2 LTR MaLR -372 254 4 2243 118 0 7 chr11 127620802 127621120 -21162352 - AluSx SINE Alu 0 316 1 328 268 134 0 chr11 127623619 127623731 -21159741 - MIR SINE MIR -76 186 60 1855 166 3 0 chr11 127623775 127624065 -21159407 + AluSx SINE Alu 21 311 -1 331 300 109 0 chr11 127624202 127624312 -21159160 + MIR SINE MIR 62 183 -79 2285 56 0 0 chr11 127624799 127625068 -21158404 + AluY SINE Alu 2 270 -41 243 170 0 0 chr11 127626024 127626071 -21157401 + (TG)n Simple_repeat Simple_repeat 1 47 0 1925 132 0 69 chr11 127628058 127628376 -21155096 - AluJo SINE Alu -14 298 3 480 284 84 42 chr11 127628440 127628655 -21154817 + MIR SINE MIR 14 237 -25 2012 126 29 42 chr11 127628710 127629052 -21154420 + THE1C LTR MaLR 1 339 -36 1981 118 50 0 chr11 127629052 127629332 -21154140 - AluSx SINE Alu -16 296 3 2012 126 29 42 chr11 127629332 127629369 -21154103 + THE1C LTR MaLR 339 375 0 550 280 12 0 chr11 127629664 127629832 -21153640 - MER5B DNA MER1_type -4 174 5 286 282 47 52 chr11 127629959 127630113 -21153359 + MIR SINE MIR 39 190 -55 557 257 33 22 chr11 127630200 127630383 -21153089 - MLT1B LTR MaLR -4 463 279 690 160 6 208 chr11 127630498 127630701 -21152771 - MLT1B LTR MaLR -117 273 163 1492 183 72 28 chr11 127630701 127630991 -21152481 - AluJb SINE Alu -9 303 1 690 160 6 208 chr11 127630991 127631124 -21152348 - MLT1B LTR MaLR -227 163 5 303 224 0 0 chr11 127631694 127631801 -21151671 + (TG)n Simple_repeat Simple_repeat 1 107 0 463 187 0 0 chr11 127631976 127632051 -21151421 + MER63 DNA MER1_type 681 755 -81 421 315 8 0 chr11 127632413 127632540 -21150932 - MIR SINE MIR -65 143 16 207 0 0 0 chr11 127632983 127633006 -21150466 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 520 226 215 6 chr11 127633219 127633396 -21150076 - MIR SINE MIR 0 262 49 397 213 12 0 chr11 127633604 127633684 -21149788 + MIR SINE MIR 73 153 -109 639 291 66 51 chr11 127633749 127634082 -21149390 - L2 LINE L2 -2 3270 2933 3426 181 71 105 chr11 127634178 127635464 -21148008 - L1M4 LINE L1 -1039 5176 3935 1640 128 89 89 chr11 127635464 127635823 -21147649 + THE1B LTR MaLR 1 359 -5 663 225 114 14 chr11 127635835 127636240 -21147232 - L1MEc LINE L1 -3681 2534 2116 1822 180 3 0 chr11 127636648 127636937 -21146535 - AluJo SINE Alu -22 290 1 297 338 41 21 chr11 127637085 127637230 -21146242 + L3 LINE CR1 1384 1531 -46 384 252 85 61 chr11 127637281 127637445 -21146027 - HAL1 LINE L1 0 2507 2334 2336 110 3 0 chr11 127637445 127637745 -21145727 - AluSg SINE Alu -9 301 1 384 252 85 61 chr11 127637745 127637826 -21145646 - HAL1 LINE L1 -173 2334 2256 937 241 124 47 chr11 127637839 127638266 -21145206 - HAL1 LINE L1 -314 2193 1734 622 292 138 8 chr11 127638327 127638587 -21144885 - HAL1 LINE L1 -629 1878 1585 1009 293 115 0 chr11 127638587 127638952 -21144520 + MLT1I LTR MaLR 1 407 -2 744 233 25 0 chr11 127638969 127639128 -21144344 + AluSg/x SINE Alu 135 297 -13 2256 161 55 0 chr11 127640104 127640508 -21142964 - MSTB1 LTR MaLR -6 426 1 396 257 23 94 chr11 127640586 127640757 -21142715 + MLT1I-int LTR MaLR 1028 1186 -185 234 0 0 0 chr11 127640933 127640959 -21142513 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 488 309 0 0 chr11 127640989 127641125 -21142347 + MLT1I LTR MaLR 34 169 -240 5389 130 50 3 chr11 127641141 127642260 -21141212 - L1MA4 LINE L1 -27 6273 5103 237 98 0 0 chr11 127642277 127642318 -21141154 + (T)n Simple_repeat Simple_repeat 1 41 0 26 50 0 0 chr11 127642339 127642379 -21141093 + GC_rich Low_complexity Low_complexity 1 40 0 3124 211 44 53 chr11 127692981 127693947 -21089525 + L1MB4 LINE L1 5217 6180 0 1720 150 0 0 chr11 127694933 127695193 -21088279 + AluSx SINE Alu 1 260 -52 822 274 104 20 chr11 127695246 127695698 -21087774 + L1MB7 LINE L1 5686 6175 -9 425 341 34 10 chr11 127695805 127696010 -21087462 - L1M4 LINE L1 -2186 3960 3751 1585 271 67 13 chr11 127697055 127697760 -21085712 + L1MC2 LINE L1 2814 3556 -2590 1690 226 51 51 chr11 127697760 127698294 -21085178 + L1MC2 LINE L1 5748 6285 -59 2151 91 0 7 chr11 127698294 127698635 -21084837 - AluSq SINE Alu 0 339 1 1690 226 51 51 chr11 127698635 127698687 -21084785 + L1MC2 LINE L1 6284 6335 -9 194 194 194 65 chr11 127699323 127699447 -21084025 + MIR3 SINE MIR 4 143 -65 193 340 69 28 chr11 127701490 127701634 -21081838 + MIR SINE MIR 58 207 -55 804 161 24 0 chr11 127703077 127703201 -21080271 + AluSq/x SINE Alu 1 127 -185 644 52 10 73 chr11 127704117 127704309 -21079163 + (TA)n Simple_repeat Simple_repeat 1 180 0 358 273 45 61 chr11 127704318 127704516 -21078956 + L1MC5 LINE L1 7519 7713 -248 374 23 0 0 chr11 127704524 127704567 -21078905 - AluY SINE Alu -256 44 2 2184 231 88 39 chr11 127704570 127704936 -21078536 - HAL1 LINE L1 -1302 1205 858 2350 70 7 0 chr11 127704936 127705235 -21078237 + AluY SINE Alu 1 301 -10 2184 231 88 39 chr11 127705235 127705698 -21077774 - HAL1 LINE L1 -1649 858 419 825 237 5 11 chr11 127705698 127705888 -21077584 + MER91B DNA MER1_type 1 189 -1 2184 231 88 39 chr11 127705888 127706070 -21077402 - HAL1 LINE L1 -2088 419 247 1974 126 16 10 chr11 127706070 127706379 -21077093 - AluJb SINE Alu -1 311 1 2184 231 88 39 chr11 127706379 127706483 -21076989 - HAL1 LINE L1 -2260 247 1 2003 106 10 7 chr11 127706657 127706975 -21076497 + AluSx SINE Alu 1 312 0 262 224 94 12 chr11 127706976 127707061 -21076411 + L1ME LINE L1 5647 5738 -383 1798 142 9 49 chr11 127707061 127707386 -21076086 + AluSx SINE Alu 1 312 0 380 276 163 25 chr11 127708295 127708498 -21074974 + MIR SINE MIR 22 252 -10 421 273 64 91 chr11 127709103 127709282 -21074190 - L1MEd LINE L1 -3532 2850 2668 2065 127 0 16 chr11 127709282 127709596 -21073876 - AluSg SINE Alu -1 309 1 421 273 64 91 chr11 127709596 127709855 -21073617 - L1MEd LINE L1 -3714 2668 2424 730 217 71 62 chr11 127709859 127709993 -21073479 - MIR SINE MIR 0 262 124 1757 167 3 22 chr11 127709993 127710311 -21073161 + AluJb SINE Alu 1 312 0 730 217 71 62 chr11 127710311 127710416 -21073056 - MIR SINE MIR -138 124 21 754 198 0 0 chr11 127710625 127710751 -21072721 + FLAM_C SINE Alu 1 126 -17 1975 107 22 0 chr11 127710862 127711164 -21072308 - AluSx SINE Alu 0 311 4 280 282 77 28 chr11 127711211 127711560 -21071912 + L1MD3 LINE L1 7098 7564 -431 1898 138 7 3 chr11 127711560 127711864 -21071608 + AluJo SINE Alu 1 305 -7 280 282 77 28 chr11 127711864 127711899 -21071573 + L1MD3 LINE L1 7564 7596 -399 1461 272 135 44 chr11 127711972 127712095 -21071377 - HAL1 LINE L1 -1786 721 611 1857 146 14 0 chr11 127712095 127712382 -21071090 - AluJo SINE Alu -21 291 1 1461 272 135 44 chr11 127712382 127712919 -21070553 - HAL1 LINE L1 -1896 611 1 352 244 23 35 chr11 127713186 127713272 -21070200 - L2 LINE L2 -5 3308 3224 1567 139 36 18 chr11 127713274 127713581 -21069891 + AluJo SINE Alu 1 312 0 250 143 0 0 chr11 127713618 127713660 -21069812 + MER116 DNA Mariner 1 42 -38 570 274 98 41 chr11 127713806 127714286 -21069186 - L1MEd LINE L1 -4653 1731 1207 2144 116 0 0 chr11 127714286 127714588 -21068884 - AluSx SINE Alu -10 302 1 457 54 0 0 chr11 127714593 127714649 -21068823 - Alu SINE Alu -260 58 3 376 215 154 13 chr11 127714655 127714804 -21068668 - L1MEd LINE L1 -5055 1317 1148 1569 123 3 110 chr11 127714843 127715196 -21068276 + AluJb SINE Alu 1 319 0 1948 99 10 45 chr11 127715497 127715811 -21067661 + AluSx SINE Alu 3 305 -7 1665 231 73 80 chr11 127716228 127716312 -21067160 + L1MC4 LINE L1 7102 7185 -857 1605 120 3 86 chr11 127716312 127716604 -21066868 - AluJb SINE Alu -44 268 1 1665 231 73 80 chr11 127716604 127717315 -21066157 + L1MC4 LINE L1 7185 7891 -151 333 263 0 53 chr11 127717440 127717554 -21065918 - LTR33A LTR ERVL 0 523 416 284 245 236 9 chr11 127717711 127717817 -21065655 - MLT2E LTR ERVL -456 172 43 3485 171 39 38 chr11 127717977 127718321 -21065151 - L1MB3 LINE L1 -1 6182 5840 2183 128 0 0 chr11 127718321 127718633 -21064839 - AluSx SINE Alu 0 312 1 3485 171 39 38 chr11 127718633 127719026 -21064446 - L1MB3 LINE L1 -343 5840 5444 1960 113 38 0 chr11 127719057 127719350 -21064122 + AluSx SINE Alu 1 304 -8 991 219 137 121 chr11 127719452 127719528 -21063944 + MLT1J LTR MaLR 1 74 -437 3606 141 20 36 chr11 127719528 127720187 -21063285 - L1MB8 LINE L1 -6 6172 5525 991 219 137 121 chr11 127720187 127720327 -21063145 + MLT1J LTR MaLR 74 210 -301 2327 83 3 0 chr11 127720327 127720628 -21062844 + AluSp SINE Alu 1 302 -11 991 219 137 121 chr11 127720628 127720913 -21062559 + MLT1J LTR MaLR 210 511 0 448 304 148 25 chr11 127720974 127721211 -21062261 - MLT1J2 LTR MaLR -118 332 67 1894 153 0 7 chr11 127721258 127721565 -21061907 - AluSx SINE Alu -7 305 1 483 282 23 35 chr11 127721574 127721748 -21061724 + L2 LINE L2 2139 2310 -1004 511 365 49 18 chr11 127722017 127722343 -21061129 + L2 LINE L2 2329 2664 -650 300 327 91 0 chr11 127722431 127722541 -21060931 + MIR3 SINE MIR 37 156 -52 227 253 172 30 chr11 127722538 127722637 -21060835 - L2 LINE L2 0 3313 3201 * 1657 211 43 11 chr11 127722788 127723188 -21060284 + MLT1J LTR MaLR 1 459 -52 361 188 0 0 chr11 127723217 127723281 -21060191 + MLT1J LTR MaLR 127 190 -321 342 232 0 91 chr11 127723292 127723391 -21060081 + L1MC4 LINE L1 6614 6703 -1339 231 167 0 0 chr11 127723392 127723428 -21060044 + MLT1J LTR MaLR 476 511 0 212 296 111 15 chr11 127723567 127723702 -21059770 - L2 LINE L2 -636 2678 2531 29 60 0 0 chr11 127728875 127728925 -21054547 + GC_rich Low_complexity Low_complexity 1 50 0 616 234 78 0 chr11 127730084 127730225 -21053247 - MIR3 SINE MIR 0 208 57 184 328 117 16 chr11 127730611 127730739 -21052733 + L2 LINE L2 3131 3271 -42 808 293 120 36 chr11 127732600 127732959 -21050513 + L3 LINE CR1 1178 1566 -11 21 0 0 0 chr11 127732959 127732980 -21050492 + AT_rich Low_complexity Low_complexity 1 21 0 474 87 0 0 chr11 127734802 127734871 -21048601 - Alu SINE Alu -5 307 239 308 367 17 0 chr11 127836403 127836523 -20946949 - L1M4 LINE L1 -2952 3194 3073 203 88 29 0 chr11 127836523 127836557 -20946915 + (TTTC)n Simple_repeat Simple_repeat 4 38 0 2262 109 0 0 chr11 127836562 127836874 -20946598 - AluSx SINE Alu 0 312 1 2333 127 18 0 chr11 127836905 127837236 -20946236 - MER1B DNA MER1_type 0 337 1 494 273 41 0 chr11 127837439 127837560 -20945912 - MIR SINE MIR -65 197 72 181 257 40 40 chr11 127838752 127838826 -20944646 - MIR SINE MIR -71 137 64 2208 110 0 10 chr11 127838876 127839186 -20944286 + AluSx SINE Alu 1 307 -5 389 293 0 0 chr11 127839695 127839801 -20943671 + MIR SINE MIR 41 146 -62 364 336 43 0 chr11 127839971 127840111 -20943361 - MIR SINE MIR 0 262 117 233 292 0 73 chr11 127840368 127840464 -20943008 - MIR SINE MIR -64 198 110 417 269 84 48 chr11 127841903 127842070 -20941402 + MIR3 SINE MIR 15 187 -21 219 281 104 44 chr11 127842096 127842231 -20941241 + MIR3 SINE MIR 47 189 -19 215 229 21 0 chr11 127842271 127842319 -20941153 + CT-rich Low_complexity Low_complexity 2 50 0 284 325 77 18 chr11 127843418 127843587 -20939885 + MIR SINE MIR 30 208 -54 186 290 145 0 chr11 127844323 127844385 -20939087 - L2 LINE L2 -3 3269 3199 2098 180 68 25 chr11 127845741 127846179 -20937293 - MLT1D LTR MaLR -48 457 1 293 212 53 93 chr11 127846467 127846618 -20936854 + MIR3 SINE MIR 38 182 -26 351 192 100 18 chr11 127846758 127846898 -20936574 - MIR SINE MIR -62 146 35 1660 172 10 24 chr11 127848120 127848416 -20935056 - AluJo SINE Alu -20 292 1 31 68 0 0 chr11 127849219 127849278 -20934194 + AT_rich Low_complexity Low_complexity 1 59 0 817 136 0 0 chr11 127849290 127849408 -20934064 - FLAM_C SINE Alu -15 118 1 572 208 16 8 chr11 127849421 127849546 -20933926 - L1MB8 LINE L1 -22 6156 6031 4416 147 23 28 chr11 127849570 127850539 -20932933 - L1MB7 LINE L1 -120 6064 5101 23 33 0 0 chr11 127851866 127851896 -20931576 + AT_rich Low_complexity Low_complexity 1 30 0 2101 112 7 7 chr11 127851896 127852192 -20931280 + AluSq SINE Alu 2 297 -16 625 280 86 38 chr11 127852356 127852724 -20930748 + L1M4 LINE L1 4881 5275 -871 1769 174 0 11 chr11 127852724 127853011 -20930461 + AluJo SINE Alu 1 284 -28 625 280 86 38 chr11 127853011 127853085 -20930387 + L1M4 LINE L1 5275 5344 -802 * 1477 231 100 61 chr11 127853072 127853743 -20929729 + L1ME4a LINE L1 5254 5950 -220 275 217 121 24 chr11 127854196 127854279 -20929193 + L2 LINE L2 3208 3298 -15 915 147 14 0 chr11 127855519 127855662 -20927810 + FRAM SINE Alu 1 145 -31 837 90 23 15 chr11 127855767 127855900 -20927572 + AluY SINE Alu 160 293 -18 302 212 40 116 chr11 127855928 127856126 -20927346 + L1ME4a LINE L1 5927 6109 -12 741 129 0 0 chr11 127858179 127858295 -20925177 + AluSg/x SINE Alu 193 308 -4 2237 108 20 0 chr11 127858586 127858882 -20924590 - AluSx SINE Alu -10 302 1 356 198 25 12 chr11 127858923 127859004 -20924468 - L2 LINE L2 -68 3204 3123 366 23 0 0 chr11 127859504 127859547 -20923925 + (TG)n Simple_repeat Simple_repeat 2 44 0 618 126 136 0 chr11 127859587 127859690 -20923782 - FLAM_C SINE Alu -15 118 2 230 253 33 11 chr11 127859935 127860026 -20923446 + (TA)n Simple_repeat Simple_repeat 1 93 0 2592 39 0 0 chr11 127860892 127861177 -20922295 - AluY SINE Alu -14 297 13 1067 136 6 28 chr11 127861191 127861202 -20922270 - AluJo/FRAM SINE Alu -4 308 298 824 182 0 0 chr11 127861202 127861334 -20922138 + FLAM_C SINE Alu 1 132 -1 1067 136 6 28 chr11 127861334 127861499 -20921973 - AluJo/FRAM SINE Alu -14 298 136 1519 193 8 4 chr11 127861807 127862072 -20921400 + AluJo SINE Alu 1 266 -46 547 172 13 32 chr11 127862094 127862251 -20921221 + GA-rich Low_complexity Low_complexity 4 157 0 693 130 8 30 chr11 127862449 127862580 -20920892 - L1MA7 LINE L1 0 6291 6164 321 89 0 0 chr11 127865501 127865546 -20917926 + (CAG)n Simple_repeat Simple_repeat 3 47 0 232 310 124 18 chr11 127866381 127866494 -20916978 + MIR3 SINE MIR 30 154 -54 570 236 229 22 chr11 127867249 127867563 -20915909 + L3 LINE CR1 1146 1524 -53 2602 53 0 0 chr11 127867612 127867914 -20915558 - AluY SINE Alu -9 302 1 507 202 60 36 chr11 127867916 127868084 -20915388 - MIR SINE MIR -24 238 67 2280 108 16 0 chr11 127868727 127869034 -20914438 - AluSx SINE Alu 0 312 1 194 296 92 51 chr11 127869252 127869350 -20914122 - L2 LINE L2 -48 3224 3123 1893 156 0 7 chr11 127869476 127869765 -20913707 - AluJo SINE Alu -25 287 1 210 296 96 22 chr11 127870718 127870853 -20912619 - MIR3 SINE MIR -61 147 3 278 331 39 15 chr11 127871280 127871410 -20912062 - MIR SINE MIR -122 140 8 2141 116 41 0 chr11 127872811 127873103 -20910369 - AluSx SINE Alu -8 304 1 482 338 206 4 chr11 127873620 127874126 -20909346 - L2 LINE L2 -661 2653 2046 1698 154 0 0 chr11 127874859 127875112 -20908360 - AluSx SINE Alu -10 302 50 1029 154 31 51 chr11 127875378 127875468 -20908004 - MER3 DNA MER1_type -18 191 101 2221 61 20 102 chr11 127875468 127875810 -20907662 - AluYb8 SINE Alu -4 314 1 1029 154 31 51 chr11 127875810 127875914 -20907558 - MER3 DNA MER1_type -108 101 1 256 373 7 7 chr11 127876780 127876930 -20906542 + MIR SINE MIR 94 243 -19 192 217 0 0 chr11 127878537 127878583 -20904889 + T-rich Low_complexity Low_complexity 1 46 0 530 48 68 0 chr11 127879126 127879229 -20904243 + (TA)n Simple_repeat Simple_repeat 2 111 0 2087 128 10 10 chr11 127880895 127881207 -20902265 + AluSx SINE Alu 1 312 0 1359 166 36 28 chr11 127881421 127881674 -20901798 + AluJo SINE Alu 1 255 -57 2418 86 7 0 chr11 127883688 127883989 -20899483 + AluSp SINE Alu 1 303 -10 257 285 47 70 chr11 127884046 127884218 -20899254 - L2 LINE L2 -173 3099 2932 7959 13 5 0 chr11 127885414 127886874 -20896598 + L1PA3 LINE L1 4690 6153 -2 2006 107 24 3 chr11 127886951 127887242 -20896230 - AluY SINE Alu -14 297 1 2321 109 0 3 chr11 127887804 127888106 -20895366 - AluSx SINE Alu -11 301 1 234 218 127 70 chr11 127888810 127888952 -20894520 + MIR SINE MIR 103 252 -10 22 0 0 0 chr11 127889110 127889132 -20894340 + AT_rich Low_complexity Low_complexity 1 22 0 745 213 60 136 chr11 127889420 127890079 -20893393 - L2 LINE L2 -159 3154 2535 859 252 0 10 chr11 127890083 127890289 -20893183 - MIR SINE MIR -25 237 34 1389 248 127 36 chr11 127890317 127890846 -20892626 - L2 LINE L2 -849 2465 1889 252 309 148 27 chr11 127890880 127891029 -20892443 - L2 LINE L2 -1408 1906 1740 193 279 81 18 chr11 127891028 127891139 -20892333 + L2 LINE L2 1878 1995 -1319 * 200 176 0 0 chr11 127891139 127891173 -20892299 + CT-rich Low_complexity Low_complexity 1 34 0 1659 176 25 4 chr11 127891173 127891451 -20892021 - AluJb SINE Alu -24 288 5 5772 157 23 14 chr11 127891464 127892488 -20890984 - L1MC1 LINE L1 -14 6319 5286 511 322 176 21 chr11 127892488 127893118 -20890354 + L2 LINE L2 1983 2710 -604 206 360 0 13 chr11 127893190 127893265 -20890207 + L2 LINE L2 2700 2773 -541 388 223 43 0 chr11 127893288 127893382 -20890090 + MER112 DNA MER1_type 1 98 -162 724 195 0 0 chr11 127893383 127893506 -20889966 - FLAM_A SINE Alu -10 132 10 1473 161 75 36 chr11 127893525 127893804 -20889668 - AluJo SINE Alu -22 290 1 371 205 98 9 chr11 127893807 127893919 -20889553 + MER112 DNA MER1_type 90 211 -49 206 355 73 9 chr11 127894257 127894367 -20889105 + L2 LINE L2 3180 3296 -17 423 225 253 13 chr11 127894392 127894808 -20888664 + L2 LINE L2 2742 3313 0 25 23 0 23 chr11 127894919 127894931 -20888541 + AT_rich Low_complexity Low_complexity 1 12 -30 1938 122 16 23 chr11 127894931 127895235 -20888237 - AluJo SINE Alu -10 302 1 25 23 0 23 chr11 127895235 127895265 -20888207 + AT_rich Low_complexity Low_complexity 12 42 0 1612 192 3 14 chr11 127895268 127895555 -20887917 - AluJo SINE Alu -16 296 13 324 323 6 63 chr11 127895585 127895743 -20887729 - MIR SINE MIR -66 196 48 253 287 88 29 chr11 127897037 127897173 -20886299 + L2 LINE L2 3165 3308 -5 2104 116 20 0 chr11 127897221 127897514 -20885958 - AluSx SINE Alu -13 299 1 862 146 7 36 chr11 127897588 127897725 -20885747 - FLAM_C SINE Alu 0 133 1 976 171 98 73 chr11 127898856 127899102 -20884370 - MIR SINE MIR -1 261 10 1425 163 30 60 chr11 127900072 127900223 -20883249 + AluJo SINE Alu 2 141 -171 1844 91 11 47 chr11 127900223 127900498 -20882974 + AluY SINE Alu 35 299 -12 1425 163 30 60 chr11 127900498 127900646 -20882826 + AluJo SINE Alu 141 292 -20 2338 99 0 0 chr11 127901039 127901333 -20882139 - AluSx SINE Alu -18 294 1 451 271 168 14 chr11 127902986 127903200 -20880272 + MIR SINE MIR 16 262 0 225 261 0 14 chr11 127903232 127903301 -20880171 + CT-rich Low_complexity Low_complexity 3 70 0 2215 103 0 0 chr11 127903813 127904139 -20879333 - AluSx SINE Alu 0 326 1 345 271 229 16 chr11 127905481 127905669 -20877803 + MIR SINE MIR 4 231 -31 24 0 0 0 chr11 127905780 127905804 -20877668 + AT_rich Low_complexity Low_complexity 1 24 0 768 325 58 38 chr11 127905846 127906301 -20877171 - L2 LINE L2 0 3313 2808 2094 104 7 10 chr11 127906301 127906600 -20876872 + AluSx SINE Alu 1 298 -14 768 325 58 38 chr11 127906600 127906841 -20876631 - L2 LINE L2 -505 2808 2573 717 244 85 15 chr11 127906909 127907110 -20876362 + MIR SINE MIR 2 216 -46 184 225 0 0 chr11 127907182 127907222 -20876250 - MIR SINE MIR -114 148 109 222 37 0 0 chr11 127912076 127912103 -20871369 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 824 152 104 126 chr11 127912196 127912466 -20871006 - MER5C DNA MER1_type -54 270 7 1236 327 126 37 chr11 127912669 127913598 -20869874 + L2 LINE L2 1869 2880 -434 207 0 0 0 chr11 127913661 127913684 -20869788 + (TTTTG)n Simple_repeat Simple_repeat 5 27 0 533 295 195 24 chr11 127914059 127914357 -20869115 + L2 LINE L2 2923 3271 -1 2363 91 0 0 chr11 127918232 127918530 -20864942 + AluSg SINE Alu 1 298 -12 187 272 56 111 chr11 127919100 127919262 -20864210 + L3b LINE CR1 1338 1490 -93 1452 169 88 4 chr11 127921443 127921716 -20861756 + AluJb SINE Alu 1 296 -16 2245 89 3 17 chr11 127921881 127922183 -20861289 - AluSx SINE Alu -13 299 2 672 256 184 14 chr11 127923791 127923904 -20859568 + MIR SINE MIR 2 94 -168 1897 153 67 22 chr11 127923904 127924263 -20859209 - THE1C LTR MaLR 0 375 1 672 256 184 14 chr11 127924263 127924372 -20859100 + MIR SINE MIR 94 262 0 246 274 247 7 chr11 127924643 127924723 -20858749 + MER5A DNA MER1_type 9 69 -120 2363 72 7 0 chr11 127924723 127925015 -20858457 - AluSg SINE Alu -16 294 1 246 274 247 7 chr11 127925015 127925080 -20858392 + MER5A DNA MER1_type 69 189 0 532 234 69 74 chr11 127925100 127925275 -20858197 + MER5A DNA MER1_type 16 189 0 372 94 0 0 chr11 127926145 127926198 -20857274 + (TCCCC)n Simple_repeat Simple_repeat 4 56 0 2100 114 4 0 chr11 127926199 127926479 -20856993 - AluSx SINE Alu -31 281 1 555 225 65 35 chr11 127926479 127926648 -20856824 - L1MC4a LINE L1 -1072 6736 6563 236 143 0 0 chr11 127926866 127926901 -20856571 - MLT1A1 LTR MaLR 0 365 331 240 284 0 0 chr11 127927124 127927191 -20856281 + LTR66 LTR ERVL 390 456 -154 338 242 44 173 chr11 127927788 127927925 -20855547 - L2 LINE L2 -815 2499 2346 1887 162 13 10 chr11 127927925 127928227 -20855245 + AluSx SINE Alu 1 303 -9 338 242 44 173 chr11 127928227 127928290 -20855182 - L2 LINE L2 -968 2346 2351 859 153 0 0 chr11 127928290 127928408 -20855064 - FLAM_C SINE Alu -15 118 1 338 242 44 173 chr11 127928408 127928524 -20854948 - L2 LINE L2 -962 2352 2223 52 41 0 0 chr11 127929075 127929148 -20854324 + AT_rich Low_complexity Low_complexity 1 73 0 1099 148 29 72 chr11 127929154 127929297 -20854175 - AluJo SINE Alu -31 281 148 2228 108 0 16 chr11 127929297 127929603 -20853869 - AluSx SINE Alu -11 301 1 1099 148 29 72 chr11 127929603 127929668 -20853804 - AluJo SINE Alu -164 148 82 1058 297 106 28 chr11 127930112 127930633 -20852839 - L2 LINE L2 -1 3312 2687 589 200 0 36 chr11 127930654 127930744 -20852728 + FRAM SINE Alu 59 146 -166 189 0 0 0 chr11 127930744 127930765 -20852707 + (GA)n Simple_repeat Simple_repeat 1 21 0 589 200 0 36 chr11 127930765 127930784 -20852688 + FRAM SINE Alu 146 164 -12 1793 209 16 70 chr11 127930784 127930962 -20852510 + L1MD2 LINE L1 5660 5846 -513 2400 89 7 0 chr11 127930962 127931264 -20852208 + AluSg SINE Alu 1 304 -6 1793 209 16 70 chr11 127931264 127931331 -20852141 + L1MD2 LINE L1 5846 5915 -444 1423 183 131 0 chr11 127931331 127931605 -20851867 + AluJb SINE Alu 1 310 -2 1793 209 16 70 chr11 127931605 127931802 -20851670 + L1MD2 LINE L1 5915 6079 -280 965 172 26 0 chr11 127931916 127932142 -20851330 + L1MD2 LINE L1 6079 6359 0 770 200 9 60 chr11 127932178 127932393 -20851079 - L2 LINE L2 -684 2630 2427 2208 118 7 0 chr11 127937365 127937661 -20845811 - AluSx SINE Alu -14 298 1 2297 177 70 62 chr11 127938763 127939132 -20844340 - MLT1D LTR MaLR -3 502 126 1371 163 171 0 chr11 127939132 127939389 -20844083 - AluSx SINE Alu -11 301 1 2297 177 70 62 chr11 127939389 127939517 -20843955 - MLT1D LTR MaLR -379 126 1 216 0 0 0 chr11 127939935 127939959 -20843513 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2212 90 3 47 chr11 127940082 127940404 -20843068 - AluSx SINE Alu -4 308 1 2059 126 3 0 chr11 127941188 127941473 -20841999 + AluSx SINE Alu 1 286 -26 234 0 0 0 chr11 127941598 127941624 -20841848 + (T)n Simple_repeat Simple_repeat 1 26 0 593 300 108 5 chr11 127942054 127942277 -20841195 - MIR SINE MIR -12 250 5 785 203 0 0 chr11 127943464 127943597 -20839875 + FLAM_C SINE Alu 1 133 0 1714 179 3 14 chr11 127943660 127943951 -20839521 - AluJb SINE Alu -24 288 1 2015 139 0 3 chr11 127944315 127944609 -20838863 - AluSx SINE Alu -19 293 1 1913 139 7 10 chr11 127945190 127945485 -20837987 - AluSg SINE Alu -16 294 1 479 251 109 57 chr11 127945513 127945724 -20837748 + MIR SINE MIR 41 262 0 231 292 13 52 chr11 127945850 127946004 -20837468 - L2 LINE L2 -896 2418 2271 192 40 0 0 chr11 127947686 127947711 -20835761 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 202 154 26 0 chr11 127947806 127947845 -20835627 + (TA)n Simple_repeat Simple_repeat 2 41 0 1607 183 3 49 chr11 127947847 127948153 -20835319 - AluJo SINE Alu -20 292 1 2145 75 21 0 chr11 127948242 127948522 -20834950 - AluY SINE Alu -7 304 19 280 325 17 43 chr11 127948560 127948677 -20834795 + MIR3 SINE MIR 91 204 -4 1418 127 5 5 chr11 127949516 127949736 -20833736 - L1MB2 LINE L1 -9 6162 5943 282 275 189 52 chr11 127950081 127950314 -20833158 - L2 LINE L2 -1879 1435 1171 1739 127 109 0 chr11 127952578 127952853 -20830619 - AluJo SINE Alu -7 305 1 2117 114 14 0 chr11 127953114 127953403 -20830069 - AluSx SINE Alu -19 293 1 1444 67 0 0 chr11 127953409 127953587 -20829885 - AluYa5 SINE Alu -13 298 121 1906 114 43 4 chr11 127953683 127953964 -20829508 - AluSc SINE Alu -5 304 13 2285 95 0 3 chr11 127954062 127954357 -20829115 + AluSg SINE Alu 1 294 -16 351 305 85 59 chr11 127954436 127954777 -20828695 + L1MEd LINE L1 269 618 -5501 882 125 0 0 chr11 127954798 127954918 -20828554 - FLAM_C SINE Alu -12 121 2 1818 263 91 15 chr11 127955028 127955575 -20827897 + MLT1G1 LTR MaLR 1 589 -6 556 125 275 75 chr11 127955731 127955769 -20827703 + MER47A DNA MER2_type 1 30 -2293 1929 171 7 0 chr11 127955769 127956079 -20827393 - AluSx SINE Alu 0 312 1 556 125 275 75 chr11 127956079 127956200 -20827272 + MER47A DNA MER2_type 30 192 -174 198 0 0 0 chr11 127956221 127956243 -20827229 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1017 90 0 0 chr11 127956243 127956388 -20827084 - MER107 DNA MER1_type -52 145 1 952 159 34 6 chr11 127956388 127956562 -20826910 + MER47A DNA MER2_type 188 366 0 381 219 47 8 chr11 127956586 127956714 -20826758 + L1MEd LINE L1 980 1112 -5007 302 128 8 197 chr11 127956724 127956783 -20826689 - Charlie1 DNA MER1_type -1 2760 2732 2064 156 0 0 chr11 127956783 127957085 -20826387 - AluSx SINE Alu -10 302 1 302 128 8 197 chr11 127957085 127957142 -20826330 - Charlie1 DNA MER1_type -29 2732 2666 319 257 173 51 chr11 127957260 127957794 -20825678 + L1ME LINE L1 5258 5853 -313 1645 181 3 17 chr11 127957847 127958139 -20825333 + AluJo SINE Alu 5 292 -20 2233 79 14 3 chr11 127958425 127958716 -20824756 - AluY SINE Alu -17 294 1 694 210 0 0 chr11 127959272 127959396 -20824076 + FLAM_C SINE Alu 1 124 -19 306 73 0 0 chr11 127959396 127959437 -20824035 + (GGGA)n Simple_repeat Simple_repeat 1 41 0 22 0 0 0 chr11 127959578 127959600 -20823872 + AT_rich Low_complexity Low_complexity 1 22 0 3832 197 34 30 chr11 127960029 127961451 -20822021 + L1MB8 LINE L1 4749 6169 -9 1262 177 128 4 chr11 127961954 127962071 -20821401 + AluJo SINE Alu 1 102 -210 189 0 0 0 chr11 127962071 127962092 -20821380 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1262 177 128 4 chr11 127962092 127962239 -20821233 + AluJo SINE Alu 102 298 -14 1312 177 18 84 chr11 127962480 127963159 -20820313 - L1MC3 LINE L1 -17 7978 7152 1150 240 66 7 chr11 127963454 127963771 -20819701 - MLT1E LTR MaLR -4 589 299 231 36 0 0 chr11 127963895 127963923 -20819549 + (TG)n Simple_repeat Simple_repeat 1 28 0 26 0 0 0 chr11 127963980 127964006 -20819466 + AT_rich Low_complexity Low_complexity 1 26 0 703 246 51 10 chr11 127964409 127964604 -20818868 + MIR SINE MIR 3 205 -57 2307 84 3 7 chr11 127964607 127964915 -20818557 - AluSg1 SINE Alu -2 307 1 330 181 112 17 chr11 127965038 127965154 -20818318 + L1MC5 LINE L1 7787 7913 -48 1669 180 17 3 chr11 127965775 127966069 -20817403 + AluJo SINE Alu 1 298 -14 852 131 16 0 chr11 127966072 127966194 -20817278 + FLAM_C SINE Alu 1 124 -19 1660 187 10 17 chr11 127966429 127966728 -20816744 - AluJb SINE Alu -15 297 1 391 296 30 22 chr11 127966746 127966881 -20816591 - MIR3 SINE MIR -64 144 9 2523 57 3 0 chr11 127967409 127967710 -20815762 - AluY SINE Alu -9 302 1 2260 103 0 3 chr11 127968278 127968579 -20814893 + AluSg SINE Alu 1 300 -10 1927 102 11 25 chr11 127969681 127969964 -20813508 - AluSx SINE Alu 0 312 34 845 141 167 5 chr11 127970066 127970258 -20813214 + MER46B DNA MER2_type 2 99 -137 1314 177 12 16 chr11 127970293 127970536 -20812936 - AluJo SINE Alu -1 311 70 1936 140 28 0 chr11 127970769 127970931 -20812541 - AluSx SINE Alu -19 293 118 225 0 0 0 chr11 127970931 127970956 -20812516 + (TA)n Simple_repeat Simple_repeat 2 26 0 1936 140 28 0 chr11 127970956 127971078 -20812394 - AluSx SINE Alu -194 118 1 22 0 0 0 chr11 127971298 127971320 -20812152 + AT_rich Low_complexity Low_complexity 1 22 0 2281 77 0 3 chr11 127971782 127972090 -20811382 - AluSq SINE Alu 0 309 3 1327 165 56 30 chr11 127972390 127972657 -20810815 + AluJo SINE Alu 1 274 -38 551 128 134 60 chr11 127972889 127973036 -20810436 - MER105 DNA DNA -1 203 46 697 300 21 4 chr11 127973036 127973269 -20810203 + Charlie1 DNA MER1_type 1 237 -2524 510 177 62 39 chr11 127973274 127973404 -20810068 + Charlie1 DNA MER1_type 2629 2761 0 894 168 84 8 chr11 127973733 127973983 -20809489 - MER33 DNA MER1_type 0 324 56 760 295 66 4 chr11 127975878 127976119 -20807353 - MIR SINE MIR -5 257 2 1805 179 16 0 chr11 127976141 127976448 -20807024 - AluJo SINE Alu 0 312 1 1047 129 31 0 chr11 127976626 127976819 -20806653 - L1MA4 LINE L1 -10 6290 6092 548 136 11 0 chr11 127976841 127976929 -20806543 - Tigger5 DNA MER2_type 0 2323 2235 225 162 0 0 chr11 127976935 127976972 -20806500 - Tigger5 DNA MER2_type -2109 214 178 1513 159 64 15 chr11 127977358 127977622 -20805850 - AluJb SINE Alu -13 299 23 206 318 59 35 chr11 127978166 127978251 -20805221 + L2 LINE L2 3133 3219 -53 324 341 55 24 chr11 127978302 127978466 -20805006 - L3 LINE CR1 -214 1363 1195 239 265 29 15 chr11 127978533 127978601 -20804871 - MIR3 SINE MIR -4 204 136 780 296 49 28 chr11 127978842 127979089 -20804383 + MIR SINE MIR 5 256 -6 222 300 0 0 chr11 127979090 127979140 -20804332 + (CTA)n Simple_repeat Simple_repeat 2 51 0 28 0 0 0 chr11 127979238 127979266 -20804206 + AT_rich Low_complexity Low_complexity 1 28 0 2233 102 0 0 chr11 127981263 127981574 -20801898 - AluSx SINE Alu 0 311 1 250 80 20 0 chr11 127981574 127981624 -20801848 + Charlie5 DNA MER1_type 74 124 -2488 820 138 7 0 chr11 127981646 127981798 -20801674 + Charlie5 DNA MER1_type 2472 2624 0 28 0 0 0 chr11 127983442 127983470 -20800002 + AT_rich Low_complexity Low_complexity 1 28 0 1299 164 5 5 chr11 127984279 127984487 -20798985 - AluJo SINE Alu -20 292 85 1647 192 7 3 chr11 127984703 127985032 -20798440 - AluJo SINE Alu 0 331 2 634 51 0 0 chr11 127985147 127985226 -20798246 - MADE1 DNA Mariner 0 80 2 423 306 53 34 chr11 127985437 127985643 -20797829 + MIR SINE MIR 15 224 -38 1600 236 128 74 chr11 127985690 127985914 -20797558 + L1M4 LINE L1 29 239 -6620 1738 134 159 69 chr11 127985914 127986378 -20797094 - LTR54 LTR ERV1 0 510 5 1600 236 128 74 chr11 127986378 127986894 -20796578 + L1M4 LINE L1 239 809 -6050 350 336 103 7 chr11 127986912 127987058 -20796414 + L1M4 LINE L1 798 957 -5902 577 183 83 0 chr11 127987060 127987180 -20796292 + FLAM_A SINE Alu 13 142 0 829 240 130 34 chr11 127987180 127987472 -20796000 + L1M4 LINE L1 949 1268 -5591 250 200 0 0 chr11 127987474 127987519 -20795953 + AluSc SINE Alu 132 176 -123 858 196 56 8 chr11 127987519 127987769 -20795703 - L1M4 LINE L1 -3090 3056 2795 309 236 9 0 chr11 127987772 127987878 -20795594 - L1M4 LINE L1 -2971 3175 3069 914 233 6 41 chr11 127987884 127988109 -20795363 + L1M4 LINE L1 3929 4160 -2797 2015 152 3 0 chr11 127988109 127988405 -20795067 + AluJo SINE Alu 1 297 -15 914 233 6 41 chr11 127988405 127988448 -20795024 + L1M4 LINE L1 4160 4203 -2754 2090 140 0 10 chr11 127988448 127988748 -20794724 + AluJb SINE Alu 1 297 -15 914 233 6 41 chr11 127988748 127988822 -20794650 + L1M4 LINE L1 4203 4260 -2697 2437 68 3 0 chr11 127988822 127989115 -20794357 + AluY SINE Alu 1 294 -17 495 48 0 0 chr11 127989115 127989177 -20794295 + (CATA)n Simple_repeat Simple_repeat 2 63 0 255 326 97 11 chr11 127989214 127989389 -20794083 + L2 LINE L2 1930 2119 -1195 307 94 87 0 chr11 127989419 127989546 -20793926 + (TA)n Simple_repeat Simple_repeat 1 138 0 2170 95 14 0 chr11 127989546 127989830 -20793642 - AluY SINE Alu -23 288 1 1888 216 25 18 chr11 127989965 127990409 -20793063 + LTR40b LTR ERVL 1 447 -15 190 353 80 60 chr11 127990605 127991106 -20792366 - L2 LINE L2 -1810 1504 994 783 162 0 22 chr11 127991140 127991276 -20792196 + FLAM_C SINE Alu 1 133 0 411 190 146 17 chr11 127991361 127991421 -20792051 + Charlie5 DNA MER1_type 1 34 -158 2357 72 0 0 chr11 127991421 127991711 -20791761 + AluY SINE Alu 15 304 -7 411 190 146 17 chr11 127991711 127991792 -20791680 + Charlie5 DNA MER1_type 34 145 -47 891 230 136 54 chr11 127991879 127992270 -20791202 - MER77 LTR ERV1 -6 599 177 434 270 58 7 chr11 127992327 127992464 -20791008 - MER77 LTR ERV1 -408 197 54 285 197 30 0 chr11 127992490 127992556 -20790916 + Charlie5 DNA MER1_type 131 198 -2414 695 220 45 19 chr11 127992557 127992821 -20790651 + Charlie5 DNA MER1_type 2353 2623 0 241 360 56 17 chr11 127992825 127993058 -20790414 - L2 LINE L2 -2430 884 643 259 205 24 48 chr11 127993521 127993604 -20789868 + MER2 DNA MER2_type 264 344 -1 1048 323 109 6 chr11 127993604 127994315 -20789157 + L2 LINE L2 2533 3303 -10 283 313 30 0 chr11 127994378 127994445 -20789027 + L2 LINE L2 3187 3255 -17 2351 69 0 0 chr11 127995357 127995645 -20787827 + AluY SINE Alu 1 288 -23 207 0 0 0 chr11 127995653 127995676 -20787796 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 22 56 0 0 chr11 127995840 127995876 -20787596 + AT_rich Low_complexity Low_complexity 1 36 0 2303 117 0 3 chr11 127996132 127996439 -20787033 + AluSx SINE Alu 1 306 -6 509 238 53 108 chr11 127996601 127997000 -20786472 - L1MC5 LINE L1 -275 7686 7310 1054 196 65 121 chr11 127997188 127997217 -20786255 - L1MC5 LINE L1 -753 7208 7179 2178 128 3 0 chr11 127997217 127997521 -20785951 + AluSg SINE Alu 1 305 -5 1054 196 65 121 chr11 127997521 127997995 -20785477 - L1MC5 LINE L1 -782 7179 6733 819 128 0 0 chr11 127997998 127998139 -20785333 + (TCTCC)n Simple_repeat Simple_repeat 5 145 0 374 56 0 19 chr11 127998177 127998231 -20785241 + (TCTCC)n Simple_repeat Simple_repeat 4 56 0 316 256 132 39 chr11 127998633 127998762 -20784710 + L2 LINE L2 3164 3304 -9 247 379 53 0 chr11 127998886 127998981 -20784491 - L2 LINE L2 -26 3246 3147 708 174 22 58 chr11 127999656 127999794 -20783678 - FLAM_C SINE Alu 0 133 1 585 227 47 39 chr11 128000053 128000181 -20783291 - FLAM_A SINE Alu -4 129 1 1324 181 69 18 chr11 128000346 128000623 -20782849 + AluJo SINE Alu 1 291 -21 888 143 8 0 chr11 128000631 128000757 -20782715 + FLAM_C SINE Alu 1 127 -6 261 83 0 0 chr11 128001023 128001059 -20782413 + (T)n Simple_repeat Simple_repeat 1 36 0 1533 159 28 4 chr11 128002177 128002428 -20781044 - AluJo SINE Alu -14 298 42 21 0 0 0 chr11 128002474 128002495 -20780977 + AT_rich Low_complexity Low_complexity 1 21 0 2072 97 0 4 chr11 128002540 128002808 -20780664 + AluSg SINE Alu 36 302 -8 201 39 0 0 chr11 128003890 128003916 -20779556 + (TTTTC)n Simple_repeat Simple_repeat 5 30 0 862 121 73 0 chr11 128003916 128004040 -20779432 - AluSq/x SINE Alu -180 133 1 340 345 14 7 chr11 128004053 128004201 -20779271 - L1ME LINE L1 -392 5729 5581 231 240 0 20 chr11 128005317 128005367 -20778105 + Charlie6 DNA MER1_type 1878 1926 -1574 2239 116 0 0 chr11 128005539 128005833 -20777639 + AluSx SINE Alu 1 294 -18 933 168 12 12 chr11 128005836 128005997 -20777475 + AluJo SINE Alu 122 282 -30 483 183 0 0 chr11 128005999 128006070 -20777402 - AluJ/FLAM SINE Alu -240 72 2 199 378 48 54 chr11 128006076 128006412 -20777060 + L2 LINE L2 2594 2927 -387 1517 101 60 5 chr11 128006504 128006721 -20776751 - MER30 DNA MER1_type 0 230 2 431 236 68 56 chr11 128007641 128007802 -20775670 + MIR SINE MIR 29 191 -71 680 169 8 8 chr11 128007824 128007942 -20775530 + FLAM_C SINE Alu 1 118 -15 23 0 0 0 chr11 128007942 128007965 -20775507 + AT_rich Low_complexity Low_complexity 1 23 0 2142 123 0 3 chr11 128008548 128008849 -20774623 + AluJb SINE Alu 1 300 -12 362 293 24 10 chr11 128009480 128009617 -20773855 + MIR SINE MIR 19 154 -65 1477 196 57 11 chr11 128009633 128009914 -20773558 - AluSx SINE Alu -18 294 1 220 359 0 26 chr11 128009980 128010058 -20773414 - MIR SINE MIR -98 110 35 1831 148 10 13 chr11 128010287 128010592 -20772880 + MER7A DNA MER2_type 44 345 -1 2236 102 0 34 chr11 128011604 128011636 -20771836 - AluSq SINE Alu -1 312 280 207 0 0 0 chr11 128011636 128011659 -20771813 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 2236 102 0 34 chr11 128011659 128011949 -20771523 - AluSq SINE Alu -33 280 1 233 384 29 29 chr11 128012278 128012416 -20771056 - MIR SINE MIR -105 157 20 405 298 57 106 chr11 128012479 128012902 -20770570 - L2 LINE L2 -1 3271 2870 301 160 6 0 chr11 128013051 128013109 -20770363 + AluJb SINE Alu 1 41 -261 1925 129 50 0 chr11 128013113 128013391 -20770081 - AluSx SINE Alu -20 292 1 1668 144 29 14 chr11 128013392 128013669 -20769803 + AluJb SINE Alu 28 308 -4 647 335 142 28 chr11 128013669 128014280 -20769192 - L2 LINE L2 -626 2688 2008 1300 246 117 16 chr11 128014336 128014849 -20768623 + L1ME4a LINE L1 5541 6105 -16 818 205 19 19 chr11 128014862 128015023 -20768449 - AluJb SINE Alu -22 290 130 2078 195 13 27 chr11 128015044 128015655 -20767817 - L1MC/D LINE L1 -743 5403 4849 1142 130 6 0 chr11 128015678 128015881 -20767591 - AluSp SINE Alu 0 324 121 249 200 36 0 chr11 128016016 128016071 -20767401 - MER77 LTR ERV1 -250 355 299 207 0 0 0 chr11 128016082 128016105 -20767367 + (ATTG)n Simple_repeat Simple_repeat 1 23 0 488 270 58 7 chr11 128016237 128016374 -20767098 - MER77 LTR ERV1 -408 197 54 318 197 30 0 chr11 128016400 128016466 -20767006 + Charlie5 DNA MER1_type 131 198 -2414 795 224 45 19 chr11 128016467 128016731 -20766741 + Charlie5 DNA MER1_type 2353 2623 0 228 360 56 17 chr11 128016735 128016968 -20766504 - L2 LINE L2 -2430 884 643 303 193 24 48 chr11 128017429 128017512 -20765960 + MER2 DNA MER2_type 264 344 -1 995 324 109 8 chr11 128017512 128018224 -20765248 + L2 LINE L2 2533 3303 -10 279 313 30 0 chr11 128018287 128018354 -20765118 + L2 LINE L2 3187 3255 -17 2374 69 0 0 chr11 128019268 128019556 -20763916 + AluY SINE Alu 1 288 -23 207 0 0 0 chr11 128019564 128019587 -20763885 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 22 56 0 0 chr11 128019751 128019787 -20763685 + AT_rich Low_complexity Low_complexity 1 36 0 2077 133 0 7 chr11 128020043 128020337 -20763135 + AluSx SINE Alu 1 292 -20 871 263 27 27 chr11 128020337 128020469 -20763003 + MIR SINE MIR 25 159 -103 2071 124 7 3 chr11 128020469 128020767 -20762705 + AluSx SINE Alu 3 301 -11 871 263 27 27 chr11 128020767 128020858 -20762614 + MIR SINE MIR 158 248 -14 2313 82 3 3 chr11 128020895 128021189 -20762283 - AluSp SINE Alu -19 294 1 340 323 21 0 chr11 128021224 128021320 -20762152 + L2 LINE L2 3132 3229 -43 760 69 20 10 chr11 128021458 128021560 -20761912 + AluY SINE Alu 5 107 -204 2284 76 14 0 chr11 128022180 128022469 -20761003 + AluY SINE Alu 1 293 -18 658 262 152 59 chr11 128022697 128022756 -20760716 - L1ME3A LINE L1 -208 5962 5910 1676 185 0 14 chr11 128022756 128023048 -20760424 - AluJo SINE Alu -20 292 5 658 262 152 59 chr11 128023048 128023633 -20759839 - L1ME3A LINE L1 -260 5910 5258 348 128 8 197 chr11 128023751 128023808 -20759664 + Charlie1 DNA MER1_type 2666 2692 -69 2046 156 0 0 chr11 128023808 128024110 -20759362 + AluSx SINE Alu 1 302 -10 348 128 8 197 chr11 128024110 128024169 -20759303 + Charlie1 DNA MER1_type 2692 2760 -1 430 219 47 8 chr11 128024179 128024307 -20759165 - L1MEd LINE L1 -5007 1112 980 1036 159 34 6 chr11 128024331 128024505 -20758967 - MER47A DNA MER2_type 0 366 188 1091 90 0 0 chr11 128024505 128024650 -20758822 + MER107 DNA MER1_type 1 145 -52 198 0 0 0 chr11 128024650 128024672 -20758800 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 593 110 373 0 chr11 128024693 128024811 -20758661 - MER47A DNA MER2_type -174 192 31 1910 160 7 0 chr11 128024824 128025124 -20758348 + AluSx SINE Alu 11 312 0 2086 261 92 14 chr11 128025313 128025865 -20757607 - MLT1G1 LTR MaLR 0 595 1 466 313 74 83 chr11 128025910 128025975 -20757497 - L1MEd LINE L1 -5428 691 627 931 125 0 0 chr11 128025975 128026095 -20757377 + FLAM_C SINE Alu 2 121 -12 466 313 74 83 chr11 128026095 128026460 -20757012 - L1MEd LINE L1 -5492 627 265 2292 95 0 3 chr11 128026535 128026830 -20756642 - AluSg SINE Alu -16 294 1 1930 122 35 3 chr11 128026928 128027214 -20756258 + AluSc SINE Alu 13 307 -2 1177 188 12 78 chr11 128027524 128027779 -20755693 - MER8 DNA MER2_type -1 238 1 241 298 121 16 chr11 128028049 128028173 -20755299 - MIR SINE MIR -50 212 76 228 182 23 0 chr11 128028394 128028438 -20755034 - MIR SINE MIR -14 248 204 347 270 74 47 chr11 128028445 128028593 -20754879 - L1ME3A LINE L1 -7 6163 6012 947 211 22 0 chr11 128028634 128028814 -20754658 - AluJ SINE Alu 0 312 129 890 214 95 8 chr11 128028850 128029102 -20754370 - L1ME3A LINE L1 -203 5967 5694 603 191 35 0 chr11 128029113 128029228 -20754244 - L1MA9 LINE L1 -5 6307 6189 24 0 0 0 chr11 128029234 128029258 -20754214 + AT_rich Low_complexity Low_complexity 1 24 0 665 210 8 16 chr11 128029261 128029385 -20754087 - AluJ SINE Alu -178 124 2 234 0 0 0 chr11 128029473 128029499 -20753973 + (TTCC)n Simple_repeat Simple_repeat 1 26 0 3013 207 50 23 chr11 128029906 128030007 -20753465 - MER21B LTR ERV1 -48 815 718 189 0 0 0 chr11 128030007 128030028 -20753444 + (CAGTT)n Simple_repeat Simple_repeat 1 21 0 3013 207 50 23 chr11 128030028 128030625 -20752847 - MER21B LTR ERV1 -145 718 98 237 152 0 43 chr11 128030745 128030791 -20752681 - MER21B LTR ERV1 -780 83 40 238 120 0 80 chr11 128030795 128030845 -20752627 - L1MC4 LINE L1 -1335 6707 6662 553 208 9 0 chr11 128031136 128031242 -20752230 - AluSg/x SINE Alu -3 309 203 1494 85 5 5 chr11 128031242 128031441 -20752031 + AluSc SINE Alu 96 294 -15 212 280 150 10 chr11 128031589 128031689 -20751783 + MIR3 SINE MIR 85 198 -10 2020 131 7 3 chr11 128031741 128032038 -20751434 + AluSx SINE Alu 1 298 -14 1163 86 9 73 chr11 128032170 128032402 -20751070 + AluSg/x SINE Alu 86 302 -8 810 252 29 54 chr11 128032426 128032470 -20751002 + L1MD2 LINE L1 5844 5888 -471 1423 183 131 0 chr11 128032470 128032744 -20750728 + AluJb SINE Alu 1 310 -2 810 252 29 54 chr11 128032744 128032941 -20750531 + L1MD2 LINE L1 5888 6079 -280 952 173 31 0 chr11 128033055 128033280 -20750192 + L1MD2 LINE L1 6079 6359 0 728 190 19 74 chr11 128033314 128033530 -20749942 - L2 LINE L2 -684 2630 2427 690 191 75 0 chr11 128035643 128035790 -20747682 + L1ME2 LINE L1 5997 6154 -10 1125 163 52 48 chr11 128036610 128036861 -20746611 + LTR29 LTR ERV1 1 252 -370 917 182 44 0 chr11 128036864 128037023 -20746449 - AluJb SINE Alu -14 298 133 285 51 0 0 chr11 128037031 128037070 -20746402 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 189 0 0 0 chr11 128037074 128037095 -20746377 + (T)n Simple_repeat Simple_repeat 1 21 0 1799 143 7 23 chr11 128037129 128037429 -20746043 - AluSx SINE Alu -15 297 3 1029 237 75 12 chr11 128037429 128037762 -20745710 + LTR48B LTR ERV1 291 644 0 261 57 0 0 chr11 128037953 128037988 -20745484 + (A)n Simple_repeat Simple_repeat 1 35 0 431 286 116 11 chr11 128038141 128038293 -20745179 + MIR SINE MIR 11 172 -63 628 191 7 52 chr11 128039134 128039270 -20744202 + FLAM_C SINE Alu 2 131 -2 2136 131 0 0 chr11 128039711 128040016 -20743456 + AluSx SINE Alu 1 305 -7 2040 112 28 7 chr11 128040419 128040704 -20742768 + AluSx SINE Alu 3 293 -19 471 249 201 18 chr11 128040857 128041026 -20742446 - MIR SINE MIR -43 219 20 2257 104 7 0 chr11 128041557 128041856 -20741616 + AluSx SINE Alu 1 301 -11 1839 131 19 45 chr11 128041868 128042181 -20741291 + AluJo SINE Alu 1 305 -7 21 36 0 0 chr11 128042569 128042597 -20740875 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr11 128043342 128043381 -20740091 + AT_rich Low_complexity Low_complexity 1 39 0 1853 158 0 0 chr11 128043442 128043739 -20739733 + AluJb SINE Alu 1 297 -15 751 180 102 66 chr11 128044301 128044468 -20739004 + AluJo SINE Alu 2 174 -138 1618 181 31 7 chr11 128044591 128044878 -20738594 - AluJo SINE Alu -18 294 1 405 54 0 0 chr11 128045578 128045634 -20737838 + (TTCC)n Simple_repeat Simple_repeat 1 56 0 1868 166 10 0 chr11 128045634 128045923 -20737549 - AluSx SINE Alu -20 292 1 789 54 0 0 chr11 128045977 128046070 -20737402 - HY4 scRNA scRNA 0 93 1 2227 93 21 0 chr11 128046098 128046388 -20737084 + AluSq SINE Alu 1 296 -17 1033 166 0 6 chr11 128046389 128046552 -20736920 + AluSg/x SINE Alu 134 295 -17 712 182 112 108 chr11 128046567 128046863 -20736609 - L1ME LINE L1 -593 5569 5273 25 0 0 0 chr11 128046863 128046888 -20736584 + AT_rich Low_complexity Low_complexity 1 25 0 1791 163 4 0 chr11 128046898 128047174 -20736298 - AluJo SINE Alu -25 287 11 566 178 11 6 chr11 128047200 128047323 -20736149 + L1MA9 LINE L1 6155 6288 -11 409 261 100 39 chr11 128047350 128047610 -20735862 - L1ME LINE L1 -867 5279 5004 740 183 0 0 chr11 128047824 128047944 -20735528 + AluJb SINE Alu 138 257 -55 1753 133 7 7 chr11 128048044 128048314 -20735158 - AluJb SINE Alu -42 270 1 696 244 0 8 chr11 128048619 128048733 -20734739 + FLAM_A SINE Alu 1 115 -187 207 0 0 0 chr11 128048733 128048756 -20734716 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 696 244 0 8 chr11 128048756 128048772 -20734700 + FLAM_A SINE Alu 115 130 -172 2200 143 0 0 chr11 128048776 128049084 -20734388 + AluSx SINE Alu 1 308 -4 21 36 0 0 chr11 128049152 128049180 -20734292 + AT_rich Low_complexity Low_complexity 1 28 0 2291 110 0 0 chr11 128049288 128049596 -20733876 + AluSx SINE Alu 1 308 -4 1333 52 0 0 chr11 128049769 128049924 -20733548 - AluY SINE Alu -10 301 147 393 59 0 0 chr11 128049924 128049975 -20733497 + MADE1 DNA Mariner 29 79 -1 1709 157 49 3 chr11 128050128 128050415 -20733057 + AluSq SINE Alu 1 300 -13 263 250 114 11 chr11 128050693 128050781 -20732691 - MIR3 SINE MIR -51 157 61 189 0 0 0 chr11 128050967 128050988 -20732484 + (T)n Simple_repeat Simple_repeat 1 21 0 1048 76 8 0 chr11 128050988 128051120 -20732352 - AluSq/x SINE Alu -179 133 1 472 165 183 9 chr11 128051124 128051239 -20732233 + L1MB7 LINE L1 6031 6165 -19 1846 216 67 30 chr11 128051239 128051763 -20731709 - L1ME LINE L1 -1284 4862 4320 1151 153 4 64 chr11 128051763 128051999 -20731473 - AluJo SINE Alu 0 312 91 389 137 253 2 chr11 128052004 128052116 -20731356 - L1ME1 LINE L1 -341 5825 5706 2285 94 0 28 chr11 128052697 128053047 -20730425 + AluY SINE Alu 1 341 0 340 150 262 0 chr11 128054304 128054397 -20729075 - L1M4 LINE L1 -349 5817 5706 257 274 0 32 chr11 128054772 128054867 -20728605 + MIR SINE MIR 84 175 -87 1036 144 0 0 chr11 128054867 128055013 -20728459 - AluJo SINE Alu -47 265 120 755 208 0 8 chr11 128055368 128055498 -20727974 - AluJo SINE Alu -173 129 1 26 0 0 0 chr11 128055498 128055524 -20727948 + AT_rich Low_complexity Low_complexity 1 26 0 2200 95 14 3 chr11 128057636 128057931 -20725541 - AluSx SINE Alu -14 298 1 2284 109 0 0 chr11 128058046 128058348 -20725124 + AluSx SINE Alu 1 302 -10 782 139 66 8 chr11 128058570 128058692 -20724780 - FLAM_C SINE Alu -13 130 2 759 260 81 13 chr11 128058956 128059191 -20724281 - MIR SINE MIR -1 261 11 352 200 118 57 chr11 128059482 128059660 -20723812 + MIR SINE MIR 2 262 0 196 299 75 0 chr11 128059833 128059900 -20723572 - L2 LINE L2 -190 3082 3011 878 190 26 58 chr11 128060114 128060340 -20723132 - L1MA9 LINE L1 -38 6274 6056 21 0 0 0 chr11 128062365 128062386 -20721086 + AT_rich Low_complexity Low_complexity 1 21 0 218 348 43 0 chr11 128063124 128063193 -20720279 + L2 LINE L2 3186 3257 -15 1232 132 9 38 chr11 128063956 128064168 -20719304 + AluJo SINE Alu 84 289 -23 442 306 69 14 chr11 128065161 128065305 -20718167 - MIR3 SINE MIR -43 165 14 494 227 122 61 chr11 128065656 128065879 -20717593 - Charlie2 DNA MER1_type -8 2854 2646 1890 156 0 3 chr11 128065879 128066181 -20717291 + AluJb SINE Alu 6 306 -6 494 227 122 61 chr11 128066181 128066540 -20716932 - Charlie2 DNA MER1_type -216 2646 2230 755 282 18 36 chr11 128066552 128066832 -20716640 - Charlie2 DNA MER1_type -2521 341 67 853 121 8 45 chr11 128066939 128067071 -20716401 + FLAM_C SINE Alu 1 127 -16 254 250 0 16 chr11 128067165 128067229 -20716243 + MIR SINE MIR 166 228 -34 2305 82 3 0 chr11 128067652 128067944 -20715528 + AluSp SINE Alu 1 293 -20 2174 100 0 14 chr11 128068098 128068388 -20715084 + AluSg SINE Alu 1 286 -24 22 0 0 0 chr11 128068465 128068487 -20714985 + AT_rich Low_complexity Low_complexity 1 22 0 2032 150 0 0 chr11 128068575 128068875 -20714597 + AluSx SINE Alu 3 302 -10 1443 204 20 34 chr11 128068955 128069249 -20714223 + AluJo SINE Alu 3 292 -10 1940 129 7 0 chr11 128069286 128069564 -20713908 + AluSq SINE Alu 1 280 -33 180 0 0 0 chr11 128069564 128069584 -20713888 + (CA)n Simple_repeat Simple_repeat 1 20 0 438 200 21 0 chr11 128069586 128069681 -20713791 + L1MD3 LINE L1 7882 7978 -17 2268 88 0 3 chr11 128069681 128070012 -20713460 + AluSq SINE Alu 1 330 0 2649 138 13 102 chr11 128070202 128070730 -20712742 + MLT2B2 LTR ERVL 1 481 -34 2160 127 3 3 chr11 128070800 128071107 -20712365 - AluSx SINE Alu -5 307 1 2052 115 30 0 chr11 128071140 128071444 -20712028 + AluSq SINE Alu 1 313 0 215 202 247 11 chr11 128071609 128071698 -20711774 - L2 LINE L2 -640 2674 2565 2286 90 7 0 chr11 128072335 128072636 -20710836 + AluY SINE Alu 1 303 -8 2169 88 0 20 chr11 128072756 128073053 -20710419 + AluSg SINE Alu 3 293 -17 251 326 108 31 chr11 128073176 128073305 -20710167 + L2 LINE L2 3133 3271 -1 1982 108 10 10 chr11 128073316 128073612 -20709860 - AluSq SINE Alu -17 296 1 2107 141 3 0 chr11 128073612 128073915 -20709557 - AluSx SINE Alu -7 305 1 2396 93 0 3 chr11 128073959 128074271 -20709201 - AluY SINE Alu 0 311 1 1201 195 23 35 chr11 128074272 128074533 -20708939 + AluJo SINE Alu 55 312 0 1831 121 18 7 chr11 128074533 128074815 -20708657 + L1MA4 LINE L1 6015 6299 -1 2281 110 0 0 chr11 128074821 128075122 -20708350 + AluSg SINE Alu 2 302 -8 2090 113 24 3 chr11 128075350 128075641 -20707831 - AluSq SINE Alu -16 297 1 2305 99 0 3 chr11 128076009 128076312 -20707160 + AluSc SINE Alu 1 302 -7 2066 181 8 8 chr11 128077128 128077591 -20705881 - MLT2B1 LTR ERVL -8 512 1 2158 119 0 0 chr11 128078179 128078474 -20704998 - AluSx SINE Alu -14 298 4 397 302 116 11 chr11 128078972 128079166 -20704306 - MIR SINE MIR -50 212 1 2208 126 3 0 chr11 128079281 128079591 -20703881 - AluSx SINE Alu -1 311 1 1775 176 23 81 chr11 128079680 128080073 -20703399 + MLT1A2 LTR MaLR 4 373 -1 304 328 42 8 chr11 128080318 128080437 -20703035 + MIR3 SINE MIR 85 207 -1 1981 112 11 14 chr11 128080442 128080758 -20702714 - AluSx SINE Alu 0 315 1 325 161 0 0 chr11 128081729 128081785 -20701687 + AluSx SINE Alu 1 56 -247 1805 120 0 12 chr11 128081814 128082072 -20701400 + AluSx SINE Alu 56 310 -2 593 230 127 0 chr11 128082325 128082451 -20701021 - FAM SINE Alu -43 142 1 2092 119 10 19 chr11 128082510 128082821 -20700651 - AluSx SINE Alu -4 308 1 1580 169 34 40 chr11 128082866 128083220 -20700252 - L1MB8 LINE L1 -4 6174 5823 2248 104 27 0 chr11 128083220 128083519 -20699953 - AluSg SINE Alu -3 307 1 2070 138 3 3 chr11 128083540 128083852 -20699620 - AluSx SINE Alu 0 312 1 819 161 24 0 chr11 128083859 128083983 -20699489 - FLAM_C SINE Alu -6 127 1 2162 119 9 25 chr11 128083993 128084311 -20699161 - AluSq SINE Alu 0 313 1 1405 204 116 31 chr11 128084317 128084574 -20698898 - L1M4 LINE L1 -1439 4707 4473 210 37 0 0 chr11 128084574 128084601 -20698871 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2051 104 25 7 chr11 128084603 128084882 -20698590 - AluSc SINE Alu -25 284 1 1405 204 116 31 chr11 128084882 128085071 -20698401 - L1M4 LINE L1 -1673 4473 4220 2159 136 3 0 chr11 128085350 128085659 -20697813 - AluSx SINE Alu -2 310 1 507 254 146 32 chr11 128085933 128086188 -20697284 - MIR SINE MIR 0 262 2 1907 139 29 0 chr11 128086196 128086470 -20697002 - AluJo SINE Alu -29 283 2 539 143 143 31 chr11 128086471 128086569 -20696903 - FLAM_A SINE Alu -8 134 26 270 322 124 28 chr11 128086956 128087133 -20696339 - L2 LINE L2 -537 2777 2584 807 156 33 0 chr11 128087175 128087297 -20696175 + FLAM_C SINE Alu 1 126 -17 21 0 0 0 chr11 128087297 128087318 -20696154 + AT_rich Low_complexity Low_complexity 1 21 0 447 311 98 6 chr11 128087471 128087654 -20695818 - MIR SINE MIR 0 262 63 224 314 0 14 chr11 128087670 128087740 -20695732 - L2 LINE L2 -963 2351 2283 557 311 41 27 chr11 128087819 128088038 -20695434 - MIR SINE MIR -4 258 37 1187 213 91 57 chr11 128088204 128088556 -20694916 + MLT1A1 LTR MaLR 2 365 0 3396 47 0 0 chr11 128088670 128089054 -20694418 + L1PA5 LINE L1 5763 6146 -8 355 157 0 0 chr11 128089054 128089124 -20694348 + (TA)n Simple_repeat Simple_repeat 1 70 0 367 325 82 34 chr11 128089206 128089498 -20693974 + L1MC4a LINE L1 5554 5859 -1949 741 156 37 0 chr11 128089505 128089640 -20693832 - L1MD1 LINE L1 0 6242 6103 546 302 137 67 chr11 128090018 128090185 -20693287 - L2 LINE L2 -4 3268 3114 868 230 36 80 chr11 128090185 128090459 -20693013 + MIR SINE MIR 1 262 0 546 302 137 67 chr11 128090459 128090764 -20692708 - L2 LINE L2 -158 3114 2759 2176 118 0 0 chr11 128090764 128091061 -20692411 + AluSg SINE Alu 1 297 -13 546 302 137 67 chr11 128091061 128091179 -20692293 - L2 LINE L2 -513 2759 2651 315 277 67 8 chr11 128091972 128092091 -20691381 + L1M4 LINE L1 3935 4060 -2086 6004 148 38 9 chr11 128092091 128092839 -20690633 + L1MC2 LINE L1 5200 5989 -355 2417 87 0 0 chr11 128092839 128093139 -20690333 + AluSq SINE Alu 1 300 -13 6004 148 38 9 chr11 128093139 128093489 -20689983 + L1MC2 LINE L1 5989 6328 -16 1693 182 17 3 chr11 128093489 128093786 -20689686 + AluJo SINE Alu 1 301 -11 697 261 149 0 chr11 128093890 128094112 -20689360 + MIR SINE MIR 2 256 -6 385 218 255 20 chr11 128094120 128094267 -20689205 + MER5A DNA MER1_type 9 178 0 23 0 0 0 chr11 128094540 128094563 -20688909 + AT_rich Low_complexity Low_complexity 1 23 0 1176 96 0 0 chr11 128094567 128094713 -20688759 + AluSq/x SINE Alu 1 146 -166 1887 117 78 7 chr11 128096107 128096390 -20687082 - AluSx SINE Alu -9 303 1 2046 110 7 3 chr11 128097394 128097718 -20685754 + AluSg SINE Alu 1 325 0 24 32 0 0 chr11 128097837 128097868 -20685604 + AT_rich Low_complexity Low_complexity 1 31 0 1845 148 31 7 chr11 128098166 128098456 -20685016 - AluSx SINE Alu -15 297 1 2443 97 7 0 chr11 128098583 128098893 -20684579 - AluSx SINE Alu 0 312 1 3541 173 67 44 chr11 128098895 128099060 -20684412 + L1ME1 LINE L1 5157 5317 -1017 1787 165 7 23 chr11 128099060 128099363 -20684109 - AluJo SINE Alu -14 298 1 3541 173 67 44 chr11 128099363 128100219 -20683253 + L1ME1 LINE L1 5317 6332 -2 2224 101 10 0 chr11 128100230 128100526 -20682946 + AluSx SINE Alu 1 299 -13 1637 172 7 24 chr11 128100992 128101288 -20682184 + AluJo SINE Alu 1 291 -21 814 188 128 59 chr11 128101733 128102053 -20681419 - L1MC5 LINE L1 -33 7928 7587 805 217 0 44 chr11 128102831 128102969 -20680503 + FRAM SINE Alu 2 145 -167 2412 86 3 0 chr11 128102969 128103271 -20680201 - AluSq SINE Alu -10 303 1 1965 103 89 3 chr11 128103272 128103554 -20679918 - AluSq SINE Alu -7 306 1 805 217 0 44 chr11 128103554 128103593 -20679879 + FRAM SINE Alu 144 173 -3 326 272 61 35 chr11 128103966 128104080 -20679392 + L2 LINE L2 3151 3267 -5 235 173 19 19 chr11 128104082 128104134 -20679338 + GA-rich Low_complexity Low_complexity 3 54 0 1261 181 39 42 chr11 128104150 128104409 -20679063 - AluJo SINE Alu -19 293 36 714 138 62 39 chr11 128104513 128104643 -20678829 - FLAM_C SINE Alu 0 133 1 2178 113 10 0 chr11 128104830 128105140 -20678332 + AluSq SINE Alu 1 313 0 317 327 72 40 chr11 128106137 128106360 -20677112 + MIR SINE MIR 7 236 -26 632 146 100 18 chr11 128106651 128106761 -20676711 - FRAM SINE Alu -25 151 33 239 264 14 28 chr11 128107099 128107171 -20676301 + MIR SINE MIR 16 86 -122 2246 106 0 13 chr11 128107365 128107668 -20675804 + AluSx SINE Alu 1 299 -13 2295 85 13 10 chr11 128108261 128108566 -20674906 - AluY SINE Alu -5 306 1 2292 110 3 0 chr11 128108566 128108873 -20674599 - AluSq SINE Alu -4 309 1 2221 81 0 52 chr11 128109256 128109564 -20673908 - AluSg1 SINE Alu -17 292 1 1503 233 0 7 chr11 128109597 128109898 -20673574 + AluJo SINE Alu 1 299 -13 2137 79 52 14 chr11 128111138 128111429 -20672043 - AluSx SINE Alu -10 302 1 32 43 0 0 chr11 128111440 128111486 -20671986 + AT_rich Low_complexity Low_complexity 1 46 0 347 269 45 45 chr11 128112135 128112291 -20671181 - L2 LINE L2 0 3313 3158 25 31 0 0 chr11 128112421 128112453 -20671019 + AT_rich Low_complexity Low_complexity 1 32 0 843 216 0 0 chr11 128112614 128112762 -20670710 + AluSg/x SINE Alu 135 282 -28 23 33 0 0 chr11 128112762 128112792 -20670680 + AT_rich Low_complexity Low_complexity 1 30 0 351 256 226 56 chr11 128112814 128113119 -20670353 + L1MC4a LINE L1 5296 5652 -2156 23 33 0 0 chr11 128113227 128113257 -20670215 + AT_rich Low_complexity Low_complexity 1 30 0 2148 123 7 0 chr11 128113392 128113684 -20669788 + AluSx SINE Alu 1 294 -18 534 249 40 20 chr11 128113690 128113891 -20669581 + L1MC4a LINE L1 5728 5932 -1876 2440 71 0 10 chr11 128114067 128114378 -20669094 + AluY SINE Alu 1 308 -3 4221 186 39 8 chr11 128114503 128115518 -20667954 + L1MB8 LINE L1 5129 6178 0 278 250 80 11 chr11 128115533 128115621 -20667851 - MIR SINE MIR -80 128 35 2246 112 0 3 chr11 128116977 128117290 -20666182 - AluSx SINE Alu 0 312 1 1412 196 16 47 chr11 128117828 128118150 -20665322 - AluJo SINE Alu 0 312 1 819 229 42 34 chr11 128118158 128118394 -20665078 + L1MC5 LINE L1 7676 7913 -48 1623 131 116 14 chr11 128118426 128118701 -20664771 + AluSg SINE Alu 1 303 -7 2283 85 3 7 chr11 128119133 128119427 -20664045 + AluSg SINE Alu 1 293 -17 1934 128 3 13 chr11 128119438 128119743 -20663729 + AluSx SINE Alu 1 302 -10 780 217 0 0 chr11 128119743 128119881 -20663591 - FRAM SINE Alu -37 139 2 814 188 128 59 chr11 128120659 128120979 -20662493 + L1MC5 LINE L1 7587 7928 -33 1637 172 7 24 chr11 128121420 128121716 -20661756 - AluJo SINE Alu -21 291 1 2224 101 10 0 chr11 128122182 128122478 -20660994 - AluSx SINE Alu -13 299 1 318 205 51 17 chr11 128122489 128122501 -20660971 - L1MA10 LINE L1 -2 6332 6321 2629 175 60 48 chr11 128122501 128123151 -20660321 - L1ME1 LINE L1 -5 6161 5504 1457 192 12 46 chr11 128123694 128124017 -20659455 - AluJo SINE Alu 0 312 1 819 229 42 34 chr11 128124025 128124261 -20659211 + L1MC5 LINE L1 7676 7913 -48 1623 131 116 14 chr11 128124293 128124568 -20658904 + AluSg SINE Alu 1 303 -7 2283 85 3 7 chr11 128125000 128125294 -20658178 + AluSg SINE Alu 1 293 -17 2269 117 0 0 chr11 128125305 128125605 -20657867 + AluSg SINE Alu 1 300 -10 2142 103 3 14 chr11 128125748 128126040 -20657432 + AluSx SINE Alu 1 289 -23 630 282 61 27 chr11 128126218 128126480 -20656992 + L1ME LINE L1 5469 5739 -382 1836 155 3 28 chr11 128126538 128126855 -20656617 + AluJo SINE Alu 1 309 -3 274 272 37 12 chr11 128127130 128127211 -20656261 - L2 LINE L2 -36 3277 3195 1910 148 3 19 chr11 128127261 128127572 -20655900 - AluJo SINE Alu -6 306 1 2463 61 0 7 chr11 128127714 128128011 -20655461 + AluY SINE Alu 1 295 -16 229 324 0 0 chr11 128129633 128129701 -20653771 + MIR SINE MIR 34 101 -107 2517 89 0 3 chr11 128129782 128130095 -20653377 - AluSq SINE Alu 0 313 2 1854 182 0 7 chr11 128130368 128130675 -20652797 - AluJo SINE Alu -7 305 1 1139 298 53 21 chr11 128130679 128131269 -20652203 + L2 LINE L2 2698 3313 0 24 77 0 0 chr11 128132257 128132309 -20651163 + AT_rich Low_complexity Low_complexity 1 52 0 673 244 34 48 chr11 128132597 128132806 -20650666 - MIR SINE MIR -43 219 14 1821 155 0 30 chr11 128132926 128133222 -20650250 + AluJo SINE Alu 14 300 -12 207 0 0 0 chr11 128133783 128133806 -20649666 + (A)n Simple_repeat Simple_repeat 1 23 0 211 236 7 61 chr11 128136575 128136723 -20646749 + (CCCCG)n Simple_repeat Simple_repeat 5 144 0 30 105 0 0 chr11 128136891 128137005 -20646467 + GC_rich Low_complexity Low_complexity 1 114 0 2348 88 3 0 chr11 128138696 128138991 -20644481 - AluSg SINE Alu -14 296 1 810 296 4 0 chr11 128139581 128139807 -20643665 - MIR SINE MIR -31 231 5 2346 69 0 10 chr11 128140062 128140351 -20643121 + AluSc SINE Alu 18 303 -6 1927 143 3 13 chr11 128140360 128140660 -20642812 + AluSx SINE Alu 1 297 -15 2012 138 0 0 chr11 128141451 128141727 -20641745 + AluSx SINE Alu 5 280 -32 180 0 0 0 chr11 128141730 128141750 -20641722 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1559 146 4 50 chr11 128142112 128142239 -20641233 - AluJo SINE Alu -54 258 148 2705 33 0 0 chr11 128142239 128142539 -20640933 - AluY SINE Alu -11 300 1 1559 146 4 50 chr11 128142539 128142672 -20640800 - AluJo SINE Alu -164 148 10 2211 114 0 23 chr11 128142833 128143139 -20640333 - AluSx SINE Alu -13 299 1 1752 145 3 77 chr11 128143636 128143783 -20639689 + AluJb SINE Alu 1 157 -155 2346 68 7 3 chr11 128143783 128144079 -20639393 + AluY SINE Alu 1 297 -14 2468 62 3 16 chr11 128144089 128144397 -20639075 + AluY SINE Alu 1 304 -7 1752 145 3 77 chr11 128144397 128144563 -20638909 + AluJb SINE Alu 166 301 -11 2302 87 3 0 chr11 128144959 128145258 -20638214 + AluSg SINE Alu 1 300 -10 2222 124 0 16 chr11 128145424 128145739 -20637733 - AluSx SINE Alu -2 310 1 2130 108 16 10 chr11 128145987 128146293 -20637179 + AluSx SINE Alu 1 308 -4 1598 161 4 29 chr11 128146756 128147036 -20636436 + AluJo SINE Alu 14 286 -26 192 77 0 0 chr11 128147086 128147112 -20636360 + (TCCC)n Simple_repeat Simple_repeat 3 28 0 1231 118 0 0 chr11 128147114 128147284 -20636188 - AluSg/x SINE Alu -6 304 135 488 191 0 154 chr11 128147434 128147515 -20635957 - L1 LINE L1 -1920 4226 4181 1521 147 0 4 chr11 128147515 128147747 -20635725 - AluJb SINE Alu -81 231 1 488 191 0 154 chr11 128147747 128147827 -20635645 - L1 LINE L1 -1965 4181 4090 195 42 0 0 chr11 128147837 128147861 -20635611 + (TTG)n Simple_repeat Simple_repeat 2 25 0 943 175 0 0 chr11 128147863 128148006 -20635466 - FRAM SINE Alu -28 148 6 2195 112 3 3 chr11 128148032 128148326 -20635146 + AluSq SINE Alu 1 294 -19 26 0 0 0 chr11 128148346 128148372 -20635100 + AT_rich Low_complexity Low_complexity 1 26 0 223 236 42 14 chr11 128148426 128148498 -20634974 + MIR SINE MIR 158 231 -31 202 289 11 56 chr11 128148815 128148905 -20634567 - MIR SINE MIR -174 88 3 25 31 0 0 chr11 128149123 128149155 -20634317 + AT_rich Low_complexity Low_complexity 1 32 0 2108 145 0 0 chr11 128149222 128149518 -20633954 + AluSq SINE Alu 1 296 -17 1754 164 16 16 chr11 128149576 128149880 -20633592 - AluSx SINE Alu -8 304 1 695 221 13 32 chr11 128149914 128150072 -20633400 + FAM SINE Alu 1 155 -30 1638 190 3 7 chr11 128150072 128150367 -20633105 - AluSx SINE Alu -13 299 6 3918 168 100 21 chr11 128150433 128151195 -20632277 - LTR12 LTR ERV1 0 826 5 2385 184 32 39 chr11 128151208 128151823 -20631649 - pTR5 LTR ERV1 -1087 1351 741 2032 107 14 0 chr11 128152010 128152299 -20631173 + AluSp SINE Alu 1 293 -20 5204 61 1 0 chr11 128152301 128152953 -20630519 - L1PA5 LINE L1 -1050 5096 4444 7491 36 7 0 chr11 128152953 128153025 -20630447 + L1PA5 LINE L1 5122 5192 -962 2127 73 0 0 chr11 128153025 128153298 -20630174 + AluY SINE Alu 1 273 -38 225 0 0 0 chr11 128153303 128153328 -20630144 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 7491 36 7 0 chr11 128153328 128154286 -20629186 + L1PA5 LINE L1 5195 6143 -11 2247 81 10 0 chr11 128154548 128154845 -20628627 + AluSg SINE Alu 1 300 -10 1623 119 0 4 chr11 128154941 128155177 -20628295 + AluSx SINE Alu 58 292 -20 799 253 30 30 chr11 128155177 128155309 -20628163 + MIR SINE MIR 25 159 -103 1960 124 7 3 chr11 128155309 128155607 -20627865 + AluSx SINE Alu 3 301 -11 799 253 30 30 chr11 128155607 128155672 -20627800 + MIR SINE MIR 158 222 -40 21 0 0 0 chr11 128155868 128155889 -20627583 + AT_rich Low_complexity Low_complexity 1 21 0 1858 127 7 19 chr11 128155978 128156286 -20627186 - AluSx SINE Alu -8 304 1 745 263 43 22 chr11 128156373 128156605 -20626867 - L1ME LINE L1 -342 5779 5543 1525 119 0 9 chr11 128157086 128157313 -20626159 + AluSx SINE Alu 1 225 -87 664 153 0 36 chr11 128157548 128157659 -20625813 - AluJb SINE Alu -139 173 67 2382 50 0 20 chr11 128157804 128158105 -20625367 + AluY SINE Alu 1 295 -16 193 211 26 0 chr11 128158314 128158352 -20625120 + MIR SINE MIR 83 121 -87 1750 153 10 7 chr11 128158784 128159078 -20624394 + AluSx SINE Alu 1 295 -17 216 0 0 0 chr11 128159359 128159383 -20624089 + (A)n Simple_repeat Simple_repeat 1 24 0 495 0 0 0 chr11 128159383 128159438 -20624034 + (TA)n Simple_repeat Simple_repeat 1 55 0 1044 107 0 7 chr11 128160235 128160385 -20623087 - AluSg/x SINE Alu -15 295 147 189 0 0 0 chr11 128161139 128161160 -20622312 + (T)n Simple_repeat Simple_repeat 1 21 0 2164 109 10 0 chr11 128162654 128162957 -20620515 + AluSq SINE Alu 1 306 -7 216 0 0 0 chr11 128163273 128163297 -20620175 + (A)n Simple_repeat Simple_repeat 1 24 0 261 319 69 65 chr11 128164735 128164951 -20618521 + L2 LINE L2 2480 2696 -618 329 327 20 10 chr11 128165247 128165348 -20618124 - L1ME LINE L1 -335 5786 5685 252 208 0 0 chr11 128165388 128165441 -20618031 - L2 LINE L2 -3 3310 3258 2155 94 3 19 chr11 128165602 128165910 -20617562 + AluSg SINE Alu 1 303 -7 411 276 89 8 chr11 128166161 128166284 -20617188 + L2 LINE L2 3138 3270 -2 2355 65 0 0 chr11 128166492 128166784 -20616688 - AluY SINE Alu -19 292 1 2086 90 0 4 chr11 128167219 128167496 -20615976 - AluSx SINE Alu -12 300 25 739 214 25 19 chr11 128167618 128167777 -20615695 + AluJo SINE Alu 121 280 -32 1491 161 52 14 chr11 128167848 128168134 -20615338 - AluSx SINE Alu -9 303 7 1409 197 7 34 chr11 128168185 128168480 -20614992 + AluJo SINE Alu 7 293 -19 2174 84 3 10 chr11 128168814 128169110 -20614362 + AluSg SINE Alu 1 294 -16 1567 156 96 0 chr11 128169866 128170148 -20613324 + AluSx SINE Alu 1 309 -3 698 228 0 0 chr11 128170733 128170856 -20612616 + FLAM_C SINE Alu 2 124 -19 1756 163 0 7 chr11 128170860 128171161 -20612311 - AluJb SINE Alu -2 310 12 26 0 0 0 chr11 128171171 128171197 -20612275 + AT_rich Low_complexity Low_complexity 1 26 0 445 269 101 13 chr11 128171453 128171680 -20611792 - L1MC4 LINE L1 -1 8041 7795 943 101 0 0 chr11 128171683 128171812 -20611660 + AluSq/x SINE Alu 6 134 -178 681 192 0 0 chr11 128171924 128172049 -20611423 + FLAM_A SINE Alu 18 142 0 2069 87 0 30 chr11 128172615 128172915 -20610557 + AluY SINE Alu 1 291 -20 2287 91 0 7 chr11 128173095 128173403 -20610069 + AluSc SINE Alu 1 306 -3 260 276 16 52 chr11 128173748 128173939 -20609533 - MIR SINE MIR -6 256 6 2136 115 0 6 chr11 128173968 128174282 -20609190 + AluSx SINE Alu 1 312 0 253 169 0 4 chr11 128174824 128175031 -20608441 + AluJb SINE Alu 1 293 -9 2167 102 3 0 chr11 128175041 128175335 -20608137 - AluSq SINE Alu -18 295 1 1260 193 140 8 chr11 128175338 128175603 -20607869 - AluJb SINE Alu -2 300 1 961 178 24 24 chr11 128175610 128175823 -20607649 - AluJo SINE Alu -13 299 87 1530 95 137 27 chr11 128175948 128176211 -20607261 + AluSx SINE Alu 20 311 -1 243 208 100 83 chr11 128177167 128177287 -20606185 + MIR3 SINE MIR 75 196 -12 255 61 0 0 chr11 128177551 128177584 -20605888 + (CAGGG)n Simple_repeat Simple_repeat 4 36 0 21873 62 3 1 chr11 128178873 128182456 -20601016 - L1PA6 LINE L1 0 6154 2561 226 264 0 19 chr11 128182596 128182649 -20600823 + L2 LINE L2 3210 3261 -11 1957 121 7 0 chr11 128182717 128183007 -20600465 + AluSp SINE Alu 1 292 -21 2225 69 0 30 chr11 128183014 128183319 -20600153 + AluY SINE Alu 3 298 -13 533 94 71 0 chr11 128183335 128183420 -20600052 + AluY SINE Alu 216 306 -5 186 175 50 0 chr11 128185320 128185360 -20598112 + MIR SINE MIR 86 127 -81 226 292 167 0 chr11 128186051 128186076 -20597396 + MIR SINE MIR 90 109 -153 1789 162 33 3 chr11 128186076 128186379 -20597093 - AluJb SINE Alu 0 312 1 226 292 167 0 chr11 128186379 128186473 -20596999 + MIR SINE MIR 109 229 -33 410 294 39 10 chr11 128187036 128187138 -20596334 - L2 LINE L2 0 3272 3168 245 122 41 0 chr11 128187370 128187419 -20596053 + L1ME4a LINE L1 5848 5898 -461 1002 165 6 0 chr11 128187426 128187596 -20595876 + AluJb SINE Alu 135 305 -7 2040 106 20 0 chr11 128187728 128188029 -20595443 + AluSg SINE Alu 1 307 -3 875 172 69 128 chr11 128188173 128188309 -20595163 - L1MC4 LINE L1 0 8042 7899 1995 119 9 28 chr11 128188309 128188628 -20594844 - AluSq SINE Alu 0 313 1 875 172 69 128 chr11 128188628 128188870 -20594602 - L1MC4 LINE L1 -143 7899 7592 292 146 0 21 chr11 128188895 128188943 -20594529 + Alu SINE Alu 10 56 -246 782 191 0 0 chr11 128188943 128189069 -20594403 + AluJo/FRAM SINE Alu 174 299 -13 581 155 0 0 chr11 128189145 128189229 -20594243 + AluJ/FLAM SINE Alu 2 85 -227 1405 162 13 92 chr11 128189366 128189681 -20593791 - AluJb SINE Alu -22 290 1 498 204 48 100 chr11 128189687 128189917 -20593555 + L1MC5 LINE L1 7708 7925 -36 1454 141 119 15 chr11 128189919 128190188 -20593284 - AluSg SINE Alu -9 301 5 21 0 0 0 chr11 128190622 128190643 -20592829 + AT_rich Low_complexity Low_complexity 1 21 0 450 136 0 0 chr11 128190713 128190779 -20592693 + FLAM_A SINE Alu 36 101 -41 1357 188 29 14 chr11 128190857 128191134 -20592338 + AluJo SINE Alu 12 292 -20 235 340 50 10 chr11 128191298 128191398 -20592074 - MIR SINE MIR -127 135 32 248 289 123 0 chr11 128191458 128191572 -20591900 + L1ME4a LINE L1 5960 6087 -34 1272 126 84 110 chr11 128191676 128191986 -20591486 + AluJb SINE Alu 1 302 0 30 27 0 0 chr11 128192205 128192242 -20591230 + AT_rich Low_complexity Low_complexity 1 37 0 698 206 0 8 chr11 128192247 128192378 -20591094 - AluSq/x SINE Alu -182 131 2 225 248 69 20 chr11 128192393 128192494 -20590978 - L1MC/D LINE L1 -770 5589 5484 700 208 8 0 chr11 128192587 128192712 -20590760 + FLAM_A SINE Alu 5 130 -3 378 0 0 0 chr11 128193218 128193260 -20590212 + (TG)n Simple_repeat Simple_repeat 1 42 0 1997 91 11 7 chr11 128193262 128193537 -20589935 - AluSq SINE Alu -37 276 1 1962 113 27 0 chr11 128193538 128193831 -20589641 - AluSp SINE Alu -12 301 1 1037 80 0 7 chr11 128193831 128193968 -20589504 - AluSq/x SINE Alu -176 136 1 395 295 54 8 chr11 128194674 128194803 -20588669 - MER5A DNA MER1_type 0 189 55 511 141 59 0 chr11 128194849 128194934 -20588538 + FLAM_A SINE Alu 11 100 -42 352 195 37 12 chr11 128195192 128195274 -20588198 + MIR3 SINE MIR 111 194 -14 358 299 35 35 chr11 128195303 128195447 -20588025 + L2 LINE L2 3170 3313 0 2115 103 10 3 chr11 128195648 128195948 -20587524 + AluSx SINE Alu 1 302 -10 2149 99 0 3 chr11 128195979 128196262 -20587210 + AluSx SINE Alu 1 282 -30 27 0 0 0 chr11 128196325 128196352 -20587120 + AT_rich Low_complexity Low_complexity 1 27 0 228 135 0 0 chr11 128197187 128197224 -20586248 + (CCG)n Simple_repeat Simple_repeat 2 38 0 2122 102 23 0 chr11 128198497 128198801 -20584671 - AluSx SINE Alu -1 311 1 310 325 138 0 chr11 128198802 128198925 -20584547 - MIR3 SINE MIR -64 144 5 2235 88 0 3 chr11 128201033 128201328 -20582144 + AluSq SINE Alu 1 294 -19 2234 101 3 0 chr11 128201328 128201624 -20581848 + AluSq SINE Alu 1 297 -16 250 356 11 11 chr11 128201626 128201713 -20581759 + MIR SINE MIR 175 261 -1 200 364 11 11 chr11 128202286 128202374 -20581098 + MIR3 SINE MIR 5 92 -116 233 250 0 0 chr11 128202603 128202659 -20580813 + L2 LINE L2 3258 3313 0 806 136 0 0 chr11 128202700 128202818 -20580654 - AluSg/x SINE Alu -15 297 180 1395 90 5 5 chr11 128202918 128203107 -20580365 - AluSq SINE Alu -124 189 1 2409 77 3 0 chr11 128203119 128203429 -20580043 - AluY SINE Alu 0 311 1 302 228 0 0 chr11 128203450 128203507 -20579965 - L2 LINE L2 -2 3311 3255 1988 127 20 0 chr11 128203677 128203977 -20579495 + AluJo SINE Alu 1 306 -6 202 220 40 0 chr11 128204998 128205048 -20578424 + CT-rich Low_complexity Low_complexity 5 56 0 2187 93 0 0 chr11 128206061 128206350 -20577122 + AluSg SINE Alu 3 291 -19 298 170 0 0 chr11 128207235 128207288 -20576184 + AluJ/FRAM SINE Alu 230 282 -20 2117 110 0 26 chr11 128207356 128207666 -20575806 + AluSq SINE Alu 1 302 -11 656 217 232 0 chr11 128207779 128207986 -20575486 - MIR SINE MIR -2 260 6 204 333 62 0 chr11 128208170 128208251 -20575221 + L3 LINE CR1 1128 1213 -364 449 323 42 0 chr11 128208403 128208592 -20574880 - MIR SINE MIR 0 262 66 241 237 34 0 chr11 128208592 128208651 -20574821 - tRNA-Thr-ACT tRNA tRNA -10 67 7 837 124 0 0 chr11 128208747 128208868 -20574604 - AluJo SINE Alu -16 296 176 976 172 72 0 chr11 128208919 128208978 -20574494 - AluJo SINE Alu -119 193 140 216 0 0 0 chr11 128208978 128209002 -20574470 + (TA)n Simple_repeat Simple_repeat 2 25 0 976 172 72 0 chr11 128209002 128209122 -20574350 - AluJo SINE Alu -172 140 1 2244 89 0 13 chr11 128209291 128209604 -20573868 + AluSp SINE Alu 1 309 -4 376 295 127 18 chr11 128209822 128209988 -20573484 + MER117 DNA MER1_type 9 192 -5 1706 168 3 3 chr11 128210021 128210312 -20573160 - AluJo SINE Alu -21 291 1 1693 174 0 23 chr11 128210531 128210836 -20572636 - AluJo SINE Alu -14 298 1 395 284 62 31 chr11 128211048 128211242 -20572230 + L2 LINE L2 3114 3313 0 2030 134 3 0 chr11 128211505 128211803 -20571669 + AluSx SINE Alu 2 300 -12 309 241 46 0 chr11 128211929 128212016 -20571456 - MIR SINE MIR -157 105 15 1285 187 49 35 chr11 128212060 128212344 -20571128 + AluJo SINE Alu 16 303 -9 1891 145 14 0 chr11 128213164 128213454 -20570018 + AluSx SINE Alu 3 296 -16 1706 149 16 48 chr11 128213469 128213785 -20569687 + AluSq SINE Alu 4 309 -4 284 0 28 0 chr11 128214847 128214883 -20568589 + (CTG)n Simple_repeat Simple_repeat 2 38 0 257 0 30 0 chr11 128216079 128216112 -20567360 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 212 263 38 0 chr11 128216122 128216202 -20567270 + A-rich Low_complexity Low_complexity 2 84 0 258 243 43 29 chr11 128216205 128216275 -20567197 + MIR3 SINE MIR 90 160 -48 222 217 0 0 chr11 128216486 128216532 -20566940 + L3 LINE CR1 1527 1572 -5 2080 128 3 3 chr11 128216561 128216874 -20566598 + AluSq SINE Alu 1 313 0 2193 118 0 0 chr11 128217985 128218289 -20565183 + AluSx SINE Alu 1 304 -8 339 339 8 8 chr11 128219134 128219258 -20564214 + GA-rich Low_complexity Low_complexity 5 128 0 2042 81 70 0 chr11 128219565 128219850 -20563622 + AluSp SINE Alu 2 306 -7 302 261 115 28 chr11 128220020 128220238 -20563234 + L1M3 LINE L1 4410 4646 -1500 * 647 195 25 31 chr11 128220236 128220458 -20563014 + L1M3 LINE L1 5276 5491 -689 1355 148 0 10 chr11 128220458 128220667 -20562805 + AluJo SINE Alu 87 293 -19 984 104 0 7 chr11 128220667 128220802 -20562670 + AluSq/x SINE Alu 1 134 -179 1954 136 7 3 chr11 128220803 128221104 -20562368 + AluSx SINE Alu 1 302 -10 2060 113 0 0 chr11 128221878 128222161 -20561311 + AluSx SINE Alu 1 283 -29 264 262 178 0 chr11 128223445 128223552 -20559920 - L2 LINE L2 -3 3310 3185 1818 247 76 46 chr11 128223918 128224553 -20558919 - L1ME3A LINE L1 -28 6142 5489 381 312 35 21 chr11 128224781 128224922 -20558550 + L2 LINE L2 3126 3268 -4 1263 293 50 43 chr11 128225660 128225960 -20557512 - L1ME4a LINE L1 -1 6120 5824 1953 118 7 0 chr11 128225960 128226247 -20557225 - AluSx SINE Alu -15 297 9 1263 293 50 43 chr11 128226247 128226869 -20556603 - L1ME4a LINE L1 -297 5824 5188 2165 122 3 3 chr11 128226869 128227181 -20556291 - AluSq SINE Alu -1 312 1 1263 293 50 43 chr11 128227181 128227264 -20556208 - L1ME4a LINE L1 -933 5188 5107 217 239 0 0 chr11 128228168 128228214 -20555258 + (TG)n Simple_repeat Simple_repeat 1 46 0 552 233 0 15 chr11 128230732 128231080 -20552392 + (CA)n Simple_repeat Simple_repeat 1 342 0 538 235 0 16 chr11 128231109 128231292 -20552180 + (CA)n Simple_repeat Simple_repeat 1 180 0 278 326 129 30 chr11 128231834 128232230 -20551242 + L2 LINE L2 2171 2605 -709 2133 101 0 28 chr11 128232315 128232632 -20550840 - AluSx SINE Alu -4 308 1 232 369 41 66 chr11 128232719 128233158 -20550314 + L2 LINE L2 2842 3269 -3 303 277 44 66 chr11 128234549 128234674 -20548798 + MIR3 SINE MIR 47 168 -40 353 257 188 0 chr11 128234674 128234818 -20548654 - MER5A DNA MER1_type 0 189 19 226 240 20 60 chr11 128235593 128235693 -20547779 + C-rich Low_complexity Low_complexity 5 100 0 228 225 0 0 chr11 128235652 128235692 -20547780 + polypyrimidine Low_complexity Low_complexity 2 41 0 298 282 47 0 chr11 128236506 128236591 -20546881 - MLT1I LTR MaLR -2 407 319 300 111 0 0 chr11 128236702 128236747 -20546725 + (CA)n Simple_repeat Simple_repeat 2 46 0 228 280 27 27 chr11 128236856 128236931 -20546541 - L2 LINE L2 -220 3052 2978 267 275 0 25 chr11 128238121 128238201 -20545271 + L2 LINE L2 3178 3255 -17 214 354 92 8 chr11 128238204 128238334 -20545138 - L2 LINE L2 -1 3312 3172 497 230 6 0 chr11 128238427 128238605 -20544867 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 254 286 6 0 chr11 128238630 128238801 -20544671 + (TGGA)n Simple_repeat Simple_repeat 1 172 0 297 303 8 0 chr11 128238819 128238938 -20544534 + (TGAA)n Simple_repeat Simple_repeat 2 121 0 622 188 12 0 chr11 128238940 128239100 -20544372 + (TGGA)n Simple_repeat Simple_repeat 4 165 0 1483 147 40 37 chr11 128240361 128240661 -20542811 + AluJb SINE Alu 11 311 -1 398 226 113 57 chr11 128241034 128241193 -20542279 + MIR3 SINE MIR 22 189 -19 564 268 42 26 chr11 128242665 128242855 -20540617 + MIR SINE MIR 9 201 -61 531 302 55 6 chr11 128243292 128243474 -20539998 + MIR SINE MIR 29 219 -43 691 288 33 76 chr11 128243485 128243588 -20539884 + L3 LINE CR1 1101 1207 -370 1750 91 121 15 chr11 128243588 128243853 -20539619 + AluSg SINE Alu 1 293 -17 691 288 33 76 chr11 128243853 128244117 -20539355 + L3 LINE CR1 1207 1452 -125 512 272 25 25 chr11 128244141 128244303 -20539169 - MIR SINE MIR 0 262 101 251 307 0 23 chr11 128245686 128245774 -20537698 + MIR3 SINE MIR 76 161 -47 2097 102 0 24 chr11 128247697 128247992 -20535480 - AluJb SINE Alu -24 288 1 385 279 134 58 chr11 128248209 128248381 -20535091 + MER5A DNA MER1_type 4 188 -1 351 222 43 51 chr11 128248447 128248564 -20534908 - MER5B DNA MER1_type -1 177 62 2035 133 3 0 chr11 128248564 128248865 -20534607 - AluJb SINE Alu -10 302 1 3476 146 44 10 chr11 128248875 128249465 -20534007 - L1MB4 LINE L1 -1 6179 5570 1728 86 0 0 chr11 128249482 128249726 -20533746 - AluSg SINE Alu 0 305 62 245 300 29 0 chr11 128249763 128249833 -20533639 - L2 LINE L2 0 3313 3242 1172 267 101 0 chr11 128250012 128250360 -20533112 + MLT1J1 LTR MaLR 64 446 0 685 312 50 28 chr11 128250748 128251065 -20532407 - L3 LINE CR1 -3 1574 1251 345 264 136 24 chr11 128251845 128251970 -20531502 - MIR SINE MIR -111 151 13 316 350 57 6 chr11 128252072 128252229 -20531243 + MIR SINE MIR 57 221 -41 949 163 26 0 chr11 128252338 128252528 -20530944 - AluJo SINE Alu 0 312 118 180 269 45 0 chr11 128253540 128253607 -20529865 - L2 LINE L2 -21 3292 3223 224 247 49 37 chr11 128253640 128253721 -20529751 - MIR SINE MIR -118 144 63 335 249 168 32 chr11 128254167 128254352 -20529120 + MIR SINE MIR 51 260 -2 195 179 36 54 chr11 128254480 128254536 -20528936 + L3 LINE CR1 1268 1322 -255 374 297 11 0 chr11 128254563 128254654 -20528818 + L3 LINE CR1 1390 1481 -96 304 325 65 35 chr11 128254681 128254850 -20528622 - MIR SINE MIR -50 212 39 294 241 181 0 chr11 128255352 128255435 -20528037 - MIR SINE MIR -3 259 162 2153 93 33 3 chr11 128256807 128257107 -20526365 - AluSc SINE Alu 0 309 1 184 261 72 0 chr11 128257685 128257754 -20525718 - MIR SINE MIR -142 120 47 325 243 87 0 chr11 128258163 128258266 -20525206 + MIR SINE MIR 30 141 -67 1539 182 52 22 chr11 128258297 128258621 -20524851 + MLT1A1 LTR MaLR 26 359 -6 428 261 199 11 chr11 128258895 128259071 -20524401 + MIR SINE MIR 48 256 -6 215 231 0 0 chr11 128259074 128259113 -20524359 + polypyrimidine Low_complexity Low_complexity 1 39 0 306 241 83 45 chr11 128259519 128259652 -20523820 + MIR SINE MIR 64 201 -61 621 288 41 14 chr11 128262752 128262971 -20520501 + MIR SINE MIR 6 230 -32 214 191 15 29 chr11 128263206 128263274 -20520198 + GA-rich Low_complexity Low_complexity 2 68 0 323 269 161 48 chr11 128265400 128265586 -20517886 + MIR SINE MIR 56 262 0 1323 162 32 104 chr11 128265612 128265920 -20517552 - AluJb SINE Alu -18 294 9 2150 103 0 10 chr11 128266160 128266461 -20517011 - AluSg SINE Alu -12 298 1 2405 113 8 33 chr11 128266797 128267161 -20516311 + THE1A LTR MaLR 1 355 0 3671 73 4 0 chr11 128267161 128267656 -20515816 + THE1A-int LTR MaLR 1 497 -1083 13378 133 32 115 chr11 128267668 128270756 -20512716 + L1PA7 LINE L1 12 2841 -3305 2144 117 3 0 chr11 128270756 128271064 -20512408 + AluSg SINE Alu 1 309 -1 18081 87 2 1 chr11 128271064 128274288 -20509184 + L1PA7 LINE L1 2914 6154 0 7927 91 7 19 chr11 128274288 128275402 -20508070 + THE1A-int LTR MaLR 480 1580 0 2451 91 20 11 chr11 128275402 128275752 -20507720 + THE1A LTR MaLR 1 353 -2 1119 239 4 15 chr11 128280000 128280260 -20503212 + MIR SINE MIR 6 262 0 381 187 0 0 chr11 128280454 128280529 -20502943 + (TG)n Simple_repeat Simple_repeat 1 75 0 1844 157 41 0 chr11 128283025 128283318 -20500154 - AluJo SINE Alu -7 305 1 2294 101 0 0 chr11 128283441 128283749 -20499723 + AluSx SINE Alu 1 308 -4 277 329 118 90 chr11 128283886 128284275 -20499197 + L2 LINE L2 2865 3264 -8 2291 72 7 16 chr11 128284613 128284920 -20498552 + AluY SINE Alu 1 304 -7 381 239 34 0 chr11 128284995 128285083 -20498389 - MIR3 SINE MIR -4 204 114 433 218 105 28 chr11 128285972 128286148 -20497324 + MLT1J LTR MaLR 1 196 -315 330 340 60 9 chr11 128287139 128287354 -20496118 - MARNA DNA Mariner -218 368 143 2304 76 3 0 chr11 128289637 128289928 -20493544 - AluSq SINE Alu -21 292 1 490 232 0 0 chr11 128289933 128290028 -20493444 + MIR SINE MIR 55 149 -59 678 250 77 67 chr11 128290093 128290405 -20493067 + L1ME2 LINE L1 5840 6154 -10 267 295 0 13 chr11 128292756 128292834 -20490638 + (CA)n Simple_repeat Simple_repeat 1 77 0 195 42 0 0 chr11 128293735 128293759 -20489713 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 207 0 0 0 chr11 128293807 128293830 -20489642 + (A)n Simple_repeat Simple_repeat 1 23 0 227 225 0 0 chr11 128293840 128293880 -20489592 - Alu SINE Alu -14 287 248 319 256 85 23 chr11 128293981 128294110 -20489362 + MIR SINE MIR 120 256 -6 302 339 29 21 chr11 128295148 128295387 -20488085 + L1MC4a LINE L1 5764 6004 -1804 2153 103 3 28 chr11 128295515 128295834 -20487638 + AluSq SINE Alu 2 312 -1 334 185 141 0 chr11 128295873 128295965 -20487507 + L1MA10 LINE L1 6220 6324 -10 1077 157 0 23 chr11 128296303 128296475 -20486997 + MER1B DNA MER1_type 57 224 -73 530 75 0 62 chr11 128296473 128296553 -20486919 + MER1B DNA MER1_type 259 333 0 * 243 279 16 0 chr11 128296682 128296743 -20486729 - MER5A DNA MER1_type -95 94 33 184 233 33 33 chr11 128296694 128296754 -20486718 + MER5B DNA MER1_type 109 168 -10 * 204 292 56 14 chr11 128298073 128298145 -20485327 - MIR SINE MIR -24 238 164 261 264 33 33 chr11 128298152 128298273 -20485199 + L1MC4 LINE L1 7921 8041 -1 382 314 52 26 chr11 128298285 128298438 -20485034 - MIR SINE MIR -86 176 20 30 27 0 0 chr11 128299580 128299617 -20483855 + AT_rich Low_complexity Low_complexity 1 37 0 288 301 70 52 chr11 128299622 128299835 -20483637 - MIR SINE MIR -44 218 2 2120 96 24 0 chr11 128300306 128300598 -20482874 - AluSx SINE Alu -13 299 1 2322 71 7 3 chr11 128300968 128301264 -20482208 + AluSp SINE Alu 1 297 -16 1839 156 0 10 chr11 128301274 128301576 -20481896 + AluSx SINE Alu 1 299 -13 927 163 0 0 chr11 128301592 128301733 -20481739 + AluJb SINE Alu 49 189 -123 838 120 0 0 chr11 128301764 128301889 -20481583 + AluJb SINE Alu 183 307 -5 2300 116 0 0 chr11 128302755 128303056 -20480416 - AluSx SINE Alu -11 301 1 257 193 35 0 chr11 128303061 128303118 -20480354 + MER5A DNA MER1_type 53 111 -78 400 271 62 8 chr11 128303479 128303702 -20479770 - LTR16B LTR ERVL -15 449 130 894 229 27 69 chr11 128304228 128304490 -20478982 + MIR SINE MIR 2 252 -10 261 274 131 0 chr11 128304521 128304605 -20478867 - L2 LINE L2 -18 3254 3160 255 311 277 11 chr11 128305370 128305630 -20477842 + L2 LINE L2 2934 3262 -10 1175 42 0 0 chr11 128305884 128306027 -20477445 + L1PA13 LINE L1 6014 6156 -7 1037 31 0 8 chr11 128306027 128306156 -20477316 + L1PA4 LINE L1 6023 6151 -4 2148 106 0 7 chr11 128307805 128308117 -20475355 + AluSq SINE Alu 1 310 0 181 297 79 79 chr11 128308401 128308502 -20474970 - L2 LINE L2 -27 3286 3186 352 109 39 3 chr11 128308887 128309119 -20474353 + AluJo SINE Alu 1 298 -4 1796 183 20 0 chr11 128309619 128309925 -20473547 + AluJo SINE Alu 1 312 0 2349 119 16 89 chr11 128310586 128311081 -20472391 + L1MB4 LINE L1 5721 6179 -1 2298 98 3 3 chr11 128312145 128312451 -20471021 + AluSg SINE Alu 1 306 -4 2527 77 0 0 chr11 128312451 128312748 -20470724 + AluSx SINE Alu 1 298 -14 611 232 153 12 chr11 128312766 128313007 -20470465 + HAL1 LINE L1 2229 2503 -4 1752 161 7 14 chr11 128313017 128313297 -20470175 + AluJo SINE Alu 6 283 -29 1161 173 0 58 chr11 128313297 128313523 -20469949 + AluJo SINE Alu 83 295 -17 200 303 30 0 chr11 128313737 128313803 -20469669 + MIR SINE MIR 83 150 -112 524 273 48 53 chr11 128314315 128314441 -20469031 - MIR SINE MIR -40 222 96 2222 128 3 0 chr11 128314441 128314739 -20468733 + AluSx SINE Alu 1 299 -13 524 273 48 53 chr11 128314739 128314821 -20468651 - MIR SINE MIR -166 96 15 1474 175 50 29 chr11 128314865 128315145 -20468327 + AluJo SINE Alu 16 301 -11 2067 144 13 0 chr11 128315966 128316265 -20467207 + AluSx SINE Alu 3 305 -7 1854 146 16 48 chr11 128316280 128316596 -20466876 + AluSq SINE Alu 4 309 -4 231 36 0 0 chr11 128317658 128317686 -20465786 + (CTG)n Simple_repeat Simple_repeat 2 29 0 293 0 27 0 chr11 128318882 128318919 -20464553 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 34 24 0 0 chr11 128318928 128318969 -20464503 + AT_rich Low_complexity Low_complexity 1 41 0 280 243 43 29 chr11 128319012 128319082 -20464390 + MIR3 SINE MIR 90 160 -48 234 217 0 0 chr11 128319293 128319339 -20464133 + L3 LINE CR1 1527 1572 -5 2225 118 3 3 chr11 128319368 128319681 -20463791 + AluSq SINE Alu 1 313 0 2320 118 0 0 chr11 128320802 128321106 -20462366 + AluSx SINE Alu 1 304 -8 226 219 0 0 chr11 128321725 128321766 -20461706 + polypyrimidine Low_complexity Low_complexity 2 42 0 339 339 8 8 chr11 128321948 128322072 -20461400 + GA-rich Low_complexity Low_complexity 5 128 0 2215 74 70 0 chr11 128322377 128322662 -20460810 + AluSp SINE Alu 2 306 -7 359 248 118 7 chr11 128322897 128323050 -20460422 + L1MB3 LINE L1 4477 4646 -1500 673 181 21 5 chr11 128323099 128323270 -20460202 + L1MB3 LINE L1 5313 5491 -682 1451 148 0 9 chr11 128323270 128323480 -20459992 + AluJo SINE Alu 87 294 -18 1085 96 0 7 chr11 128323480 128323616 -20459856 + AluSq/x SINE Alu 1 135 -177 2063 113 0 0 chr11 128323616 128323881 -20459591 + AluSg SINE Alu 1 265 -45 550 115 0 10 chr11 128323882 128323983 -20459489 + L1MB3 LINE L1 5522 5622 -561 974 175 19 0 chr11 128324033 128324193 -20459279 + FRAM SINE Alu 1 157 -19 3457 143 12 24 chr11 128324205 128324385 -20459087 + L1MB3 LINE L1 5597 5778 -405 2108 98 58 0 chr11 128324385 128324661 -20458811 + AluSg SINE Alu 1 292 -18 3457 143 12 24 chr11 128324661 128325074 -20458398 + L1MB3 LINE L1 5778 6183 0 444 286 103 37 chr11 128325077 128325343 -20458129 + L1MC/D LINE L1 5151 5431 -770 1869 170 0 7 chr11 128325418 128325734 -20457738 + AluJb SINE Alu 1 314 0 1279 197 53 45 chr11 128325813 128325962 -20457510 + L1MC/D LINE L1 4477 4623 -1523 2468 80 3 0 chr11 128325962 128326261 -20457211 - AluSp SINE Alu -13 300 1 1279 197 53 45 chr11 128326261 128326486 -20456986 + L1MC/D LINE L1 4623 4854 -1292 250 174 18 147 chr11 128326486 128326595 -20456877 + L1MC/D LINE L1 5730 5824 -1984 1853 174 7 0 chr11 128326814 128327108 -20456364 - AluJb SINE Alu -16 296 1 2038 99 48 14 chr11 128327133 128327426 -20456046 + AluSg SINE Alu 1 303 -7 2186 102 23 3 chr11 128327709 128328013 -20455459 + AluSq SINE Alu 1 310 -3 2237 122 0 3 chr11 128328732 128329043 -20454429 - AluSx SINE Alu 0 312 3 2270 104 0 7 chr11 128329762 128330059 -20453413 + AluSg SINE Alu 1 295 -15 2149 109 23 3 chr11 128330726 128331030 -20452442 - AluSq SINE Alu -3 310 1 2038 99 48 14 chr11 128331313 128331606 -20451866 - AluSg SINE Alu -7 303 1 1853 174 7 0 chr11 128331631 128331925 -20451547 + AluJb SINE Alu 1 296 -16 250 174 18 147 chr11 128332144 128332253 -20451219 - L1MC/D LINE L1 -1984 5824 5730 1298 195 53 45 chr11 128332253 128332478 -20450994 - L1MC/D LINE L1 -1292 4854 4623 2371 83 3 7 chr11 128332478 128332779 -20450693 + AluSp SINE Alu 1 300 -13 1298 195 53 45 chr11 128332779 128332928 -20450544 - L1MC/D LINE L1 -1523 4623 4477 1867 170 0 7 chr11 128333007 128333323 -20450149 - AluJb SINE Alu 0 314 1 432 288 99 38 chr11 128333398 128333667 -20449805 - L1MC/D LINE L1 -770 5376 5146 3487 143 12 22 chr11 128333667 128334080 -20449392 - L1MB3 LINE L1 0 6183 5776 2120 98 58 0 chr11 128334080 128334356 -20449116 - AluSg SINE Alu -18 292 1 3487 143 12 22 chr11 128334356 128334535 -20448937 - L1MB3 LINE L1 -407 5776 5597 999 169 19 0 chr11 128334547 128334707 -20448765 - FRAM SINE Alu -19 157 1 550 126 0 9 chr11 128334757 128334865 -20448607 - L1MB3 LINE L1 -561 5622 5512 1863 110 0 8 chr11 128334867 128335112 -20448360 - AluSq SINE Alu -54 259 17 708 204 8 0 chr11 128335118 128335250 -20448222 - FLAM_A SINE Alu 0 133 1 263 250 83 53 chr11 128335282 128335414 -20448058 - L1ME LINE L1 -445 5676 5541 439 252 30 104 chr11 128335436 128335648 -20447824 - L1ME LINE L1 -730 5432 5273 416 310 29 21 chr11 128335633 128335822 -20447650 - L1MB3 LINE L1 -814 5332 5177 * 548 232 42 42 chr11 128335846 128335988 -20447484 - MIR SINE MIR -2 260 119 2194 106 17 0 chr11 128335999 128336291 -20447181 + AluSx SINE Alu 1 297 -15 1185 117 12 18 chr11 128336291 128336453 -20447019 + AluSg/x SINE Alu 135 297 -15 404 330 108 21 chr11 128336546 128336879 -20446593 - L1MB3 LINE L1 -978 5168 4807 * 409 283 100 88 chr11 128336871 128337043 -20446429 - L1MB3 LINE L1 -1864 4282 4114 2554 50 0 0 chr11 128337043 128337340 -20446132 + AluY SINE Alu 1 297 -14 409 283 100 88 chr11 128337340 128337450 -20446022 - L1MB3 LINE L1 -2032 4114 4007 2115 128 10 0 chr11 128337450 128337739 -20445733 + AluSx SINE Alu 1 292 -20 409 283 100 88 chr11 128337739 128337865 -20445607 - L1MB3 LINE L1 -2139 4007 3868 271 213 16 0 chr11 128338368 128338429 -20445043 + L2 LINE L2 3226 3287 -26 25 0 0 0 chr11 128338753 128338778 -20444694 + GC_rich Low_complexity Low_complexity 1 25 0 180 256 0 0 chr11 128340732 128340775 -20442697 + MIR SINE MIR 44 86 -122 546 222 44 129 chr11 128340827 128341075 -20442397 + MIR SINE MIR 25 251 -11 2210 100 0 10 chr11 128341187 128341478 -20441994 + AluSq SINE Alu 22 309 -4 221 303 30 0 chr11 128341511 128341577 -20441895 + MIR SINE MIR 189 256 -6 206 233 78 78 chr11 128341847 128341963 -20441509 - L2 LINE L2 -16 3297 3182 352 298 0 0 chr11 128342040 128342124 -20441348 + MER5A DNA MER1_type 58 141 -48 2383 98 0 0 chr11 128342141 128342447 -20441025 + AluSx SINE Alu 1 306 -6 2482 86 0 0 chr11 128342965 128343267 -20440205 + AluSg SINE Alu 1 302 -8 1167 162 143 0 chr11 128343581 128343791 -20439681 - AluJo SINE Alu -33 279 40 358 90 45 112 chr11 128343838 128343927 -20439545 + AluJ/FRAM SINE Alu 220 302 0 2213 92 46 0 chr11 128344183 128344465 -20439007 + AluSq SINE Alu 1 295 -18 24 0 0 0 chr11 128344489 128344513 -20438959 + AT_rich Low_complexity Low_complexity 1 24 0 2157 127 0 3 chr11 128344694 128345001 -20438471 + AluSx SINE Alu 1 306 -6 220 318 114 102 chr11 128345090 128345326 -20438146 - L2 LINE L2 -4 3268 3030 306 86 0 52 chr11 128345376 128345434 -20438038 - Alu SINE Alu -247 55 1 310 348 137 16 chr11 128345559 128345872 -20437600 - L2 LINE L2 -524 2790 2440 2066 98 7 18 chr11 128345929 128346239 -20437233 - AluSx SINE Alu 0 307 1 401 273 33 25 chr11 128346290 128346411 -20437061 - MIR SINE MIR -94 168 47 188 381 103 0 chr11 128346432 128346558 -20436914 - L2 LINE L2 -959 2355 2217 2347 88 0 3 chr11 128347295 128347590 -20435882 + AluSx SINE Alu 1 294 -18 2104 125 3 13 chr11 128348077 128348381 -20435091 - AluSx SINE Alu -11 301 1 238 240 39 106 chr11 128348509 128348613 -20434859 + L3b LINE CR1 1298 1394 -189 2581 61 0 3 chr11 128348841 128349153 -20434319 - AluY SINE Alu 0 311 1 435 78 0 2 chr11 128349773 128349944 -20433528 + AluSq SINE Alu 94 300 -12 307 325 190 46 chr11 128350011 128350380 -20433092 - L2 LINE L2 -12 3260 2839 502 271 208 27 chr11 128350446 128350811 -20432661 - MLT1H LTR MaLR 0 549 119 308 259 116 27 chr11 128350945 128351057 -20432415 + MIR3 SINE MIR 39 160 -48 2225 121 0 7 chr11 128352010 128352308 -20431164 - AluSx SINE Alu -16 296 1 281 294 44 56 chr11 128352345 128352525 -20430947 - L2 LINE L2 -229 3043 2866 2173 103 3 0 chr11 128352536 128352857 -20430615 - AluSx SINE Alu 0 322 1 712 323 259 24 chr11 128352898 128353288 -20430184 - L2 LINE L2 -584 2730 2433 1883 131 6 58 chr11 128353288 128353600 -20429872 - AluJo SINE Alu -16 296 1 712 323 259 24 chr11 128353600 128354086 -20429386 - L2 LINE L2 -881 2433 1648 252 287 229 0 chr11 128355451 128355573 -20427899 - MIR3 SINE MIR -23 185 36 2285 87 24 0 chr11 128355814 128356101 -20427371 + AluSq SINE Alu 1 294 -19 2078 127 7 0 chr11 128356588 128356887 -20426585 - AluSx SINE Alu 0 307 7 2534 183 106 2 chr11 128356930 128357281 -20426191 + LTR49 LTR ERV1 3 431 -164 2071 136 14 0 chr11 128357281 128357575 -20425897 - AluSx SINE Alu -14 298 1 2534 183 106 2 chr11 128357575 128357760 -20425712 + LTR49 LTR ERV1 431 595 0 2313 98 0 3 chr11 128360017 128360312 -20423160 - AluSq SINE Alu -19 294 1 2259 104 0 29 chr11 128360388 128360696 -20422776 + AluSq SINE Alu 1 299 -14 186 236 0 135 chr11 128362046 128362135 -20421337 + MIR SINE MIR 30 106 -102 485 271 186 5 chr11 128362140 128362350 -20421122 + MIR SINE MIR 1 248 -14 2034 109 65 10 chr11 128362440 128362734 -20420738 + AluSx SINE Alu 1 310 -2 1010 218 55 9 chr11 128362803 128363023 -20420449 - MIR SINE MIR 0 262 33 2273 111 0 3 chr11 128363335 128363632 -20419840 + AluSg SINE Alu 1 296 -14 248 264 164 43 chr11 128364972 128365112 -20418360 - L3b LINE CR1 -126 1457 1301 2246 122 0 0 chr11 128369951 128370263 -20413209 - AluSx SINE Alu 0 312 1 1834 168 27 13 chr11 128370954 128371252 -20412220 + AluJo SINE Alu 1 302 -10 2265 97 0 0 chr11 128371252 128371555 -20411917 + AluSg SINE Alu 1 303 0 1739 149 56 3 chr11 128373641 128373929 -20409543 + AluJb SINE Alu 2 304 -8 970 179 12 0 chr11 128374225 128374387 -20409085 - FRAM SINE Alu -13 163 1 180 0 0 0 chr11 128374593 128374613 -20408859 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2325 112 0 16 chr11 128375275 128375588 -20407884 + AluSx SINE Alu 1 308 -4 1637 184 20 20 chr11 128375793 128376097 -20407375 - AluJb SINE Alu -8 304 1 478 149 0 0 chr11 128376302 128376376 -20407096 + MER81 DNA DNA 5 78 -36 2269 92 0 7 chr11 128376594 128376889 -20406583 - AluSc SINE Alu -16 293 1 2266 106 3 10 chr11 128376920 128377222 -20406250 - AluSx SINE Alu -12 300 1 1919 151 43 0 chr11 128377572 128377851 -20405621 - AluSx SINE Alu -21 291 1 1562 214 41 0 chr11 128378286 128378581 -20404891 - AluJo SINE Alu -5 307 1 5607 206 33 8 chr11 128378581 128379927 -20403545 - L1 LINE L1 -2065 4081 2703 1925 153 16 29 chr11 128379930 128380238 -20403234 + AluSq SINE Alu 1 304 -9 1257 146 12 32 chr11 128380238 128380377 -20403095 + L1MA6 LINE L1 6054 6187 -113 2231 97 7 7 chr11 128380377 128380677 -20402795 + AluSc SINE Alu 1 300 -9 1257 146 12 32 chr11 128380677 128380784 -20402688 + L1MA6 LINE L1 6187 6295 -5 1634 194 10 13 chr11 128380792 128381096 -20402376 + AluJo SINE Alu 1 303 -9 942 243 127 4 chr11 128381235 128381494 -20401978 + L2 LINE L2 3023 3313 0 2038 113 32 0 chr11 128381689 128381973 -20401499 - AluSg1 SINE Alu -16 293 1 838 137 15 0 chr11 128382005 128382136 -20401336 + FLAM_C SINE Alu 1 133 0 1347 109 6 0 chr11 128382140 128382314 -20401158 + AluSg/x SINE Alu 85 259 -53 1963 142 10 3 chr11 128382397 128382693 -20400779 - AluSx SINE Alu -13 299 2 977 122 8 0 chr11 128383410 128383541 -20399931 + AluSg SINE Alu 1 132 -178 2057 117 6 22 chr11 128384237 128384553 -20398919 + AluSq SINE Alu 3 313 0 1270 220 29 14 chr11 128384998 128385295 -20398177 + AluJb SINE Alu 1 301 0 1958 151 7 0 chr11 128385393 128385684 -20397788 + AluSp SINE Alu 1 293 -20 578 243 100 40 chr11 128385929 128386180 -20397292 - L2 LINE L2 0 3313 3048 423 135 0 0 chr11 128386180 128386254 -20397218 + AluSp/q SINE Alu 235 308 -5 482 286 46 25 chr11 128386257 128386423 -20397049 - L2 LINE L2 -256 3057 2885 1882 184 0 7 chr11 128386423 128386733 -20396739 + AluJo SINE Alu 1 308 -4 482 286 46 25 chr11 128386733 128386762 -20396710 - L2 LINE L2 -428 2885 2858 242 296 14 14 chr11 128386856 128386927 -20396545 - L2 LINE L2 -668 2646 2576 2116 143 23 0 chr11 128387039 128387340 -20396132 + AluSx SINE Alu 1 308 -4 1548 194 53 10 chr11 128387342 128387641 -20395831 + AluJo SINE Alu 1 312 0 1917 146 19 10 chr11 128387843 128388152 -20395320 + AluSx SINE Alu 1 312 0 785 199 53 130 chr11 128388156 128388336 -20395136 + MIR SINE MIR 21 176 -86 2137 132 10 13 chr11 128388336 128388647 -20394825 + AluSx SINE Alu 1 310 -2 785 199 53 130 chr11 128388647 128388728 -20394744 + MIR SINE MIR 176 262 0 675 231 30 6 chr11 128388873 128389042 -20394430 - MER58A DNA MER1_type -7 217 45 2044 112 25 3 chr11 128389046 128389331 -20394141 + AluSx SINE Alu 1 291 -21 200 225 25 0 chr11 128390038 128390078 -20393394 - L2 LINE L2 -98 3174 3134 180 0 0 0 chr11 128390158 128390178 -20393294 + (GGAA)n Simple_repeat Simple_repeat 3 22 0 275 346 71 43 chr11 128390288 128390542 -20392930 - L2 LINE L2 -509 2805 2545 661 144 0 0 chr11 128390633 128390737 -20392735 - FLAM_C SINE Alu -4 139 36 657 180 174 108 chr11 128390741 128391075 -20392397 + MLT1B LTR MaLR 27 382 -8 180 111 0 0 chr11 128391918 128391945 -20391527 + (TCC)n Simple_repeat Simple_repeat 1 27 0 2166 133 3 0 chr11 128393363 128393663 -20389809 - AluSx SINE Alu -10 302 2 420 346 164 13 chr11 128393926 128394224 -20389248 - L2 LINE L2 0 3272 2930 1806 163 0 24 chr11 128394332 128394627 -20388845 + AluJo SINE Alu 1 288 -24 1815 168 3 3 chr11 128394856 128395147 -20388325 + AluJo SINE Alu 1 291 -21 336 295 127 18 chr11 128395180 128395346 -20388126 - MER117 DNA MER1_type -5 192 9 2368 89 0 13 chr11 128395564 128395877 -20387595 - AluSp SINE Alu -4 309 1 1029 178 72 0 chr11 128396046 128396166 -20387306 + AluJo SINE Alu 1 140 -172 180 0 0 0 chr11 128396166 128396186 -20387286 + (TA)n Simple_repeat Simple_repeat 2 21 0 1029 178 72 0 chr11 128396186 128396245 -20387227 + AluJo SINE Alu 140 193 -119 888 124 0 0 chr11 128396296 128396417 -20387055 + AluJo SINE Alu 176 296 -16 765 302 37 0 chr11 128396516 128396761 -20386711 + MIR SINE MIR 9 262 0 217 333 62 0 chr11 128396914 128396995 -20386477 - L3 LINE CR1 -364 1213 1128 718 205 240 0 chr11 128397186 128397386 -20386086 + MIR SINE MIR 13 260 -2 2296 95 14 0 chr11 128397499 128397793 -20385679 - AluSq SINE Alu -10 303 6 466 302 86 71 chr11 128397794 128398132 -20385340 - L2 LINE L2 -12 3260 2918 646 273 62 74 chr11 128398164 128398329 -20385143 - MIR SINE MIR 0 262 99 2079 103 4 4 chr11 128398329 128398634 -20384838 + AluSg SINE Alu 1 305 0 646 273 62 74 chr11 128398634 128398723 -20384749 - MIR SINE MIR -163 99 10 450 354 81 36 chr11 128398726 128398908 -20384564 - L2 LINE L2 -433 2881 2709 959 200 0 0 chr11 128398908 128399078 -20384394 + FAM SINE Alu 1 170 -5 450 354 81 36 chr11 128399078 128399254 -20384218 - L2 LINE L2 -605 2709 2507 181 122 122 20 chr11 128399534 128399583 -20383889 - L2 LINE L2 -1033 2281 2228 487 82 27 0 chr11 128400567 128400640 -20382832 + AluSx SINE Alu 2 76 -236 251 130 22 0 chr11 128400740 128400786 -20382686 - Alu SINE Alu -252 47 1 863 130 15 0 chr11 128400817 128400948 -20382524 + FLAM_C SINE Alu 1 133 0 1320 115 6 0 chr11 128400952 128401126 -20382346 + AluSx SINE Alu 83 257 -53 1640 165 16 33 chr11 128401208 128401371 -20382101 - AluSx SINE Alu -14 298 141 2251 76 7 7 chr11 128401371 128401648 -20381824 - AluSx SINE Alu -19 293 17 1640 165 16 33 chr11 128401648 128401787 -20381685 - AluSx SINE Alu -171 141 1 263 250 83 53 chr11 128401818 128401950 -20381522 - L1ME LINE L1 -445 5676 5541 439 252 30 104 chr11 128401972 128402184 -20381288 - L1ME LINE L1 -732 5432 5273 316 331 38 25 chr11 128402200 128402357 -20381115 - L1 LINE L1 -811 5335 5177 831 258 57 29 chr11 128402381 128402534 -20380938 - MIR SINE MIR -2 260 95 2041 127 0 3 chr11 128402534 128402842 -20380630 + AluSx SINE Alu 1 307 0 831 258 57 29 chr11 128402842 128402931 -20380541 - MIR SINE MIR -167 95 10 450 354 81 36 chr11 128402934 128403116 -20380356 - L2 LINE L2 -433 2881 2709 960 200 0 0 chr11 128403116 128403286 -20380186 + FAM SINE Alu 1 170 -5 450 354 81 36 chr11 128403286 128403462 -20380010 - L2 LINE L2 -605 2709 2507 181 122 122 20 chr11 128403742 128403791 -20379681 - L2 LINE L2 -1033 2281 2228 843 75 0 0 chr11 128404774 128404880 -20378592 + AluSq/x SINE Alu 1 106 -206 2415 224 59 74 chr11 128404999 128405378 -20378094 + L1ME2 LINE L1 4233 4616 -1548 1614 152 45 14 chr11 128405378 128405668 -20377804 + AluJb SINE Alu 1 299 -13 2415 224 59 74 chr11 128405668 128405794 -20377678 + L1ME2 LINE L1 4616 4742 -1422 2294 68 10 0 chr11 128405794 128406088 -20377384 - AluSp SINE Alu -15 298 2 2415 224 59 74 chr11 128406088 128406325 -20377147 + L1ME2 LINE L1 4742 4981 -1183 1078 175 0 0 chr11 128406325 128406491 -20376981 + FAM SINE Alu 4 169 -6 2415 224 59 74 chr11 128406491 128407358 -20376114 + L1ME2 LINE L1 4981 5811 -353 1989 158 0 0 chr11 128407358 128407668 -20375804 + AluSx SINE Alu 1 310 -2 2415 224 59 74 chr11 128407668 128407984 -20375488 + L1ME2 LINE L1 5811 6130 -34 2052 92 62 3 chr11 128408248 128408540 -20374932 + AluSc SINE Alu 1 309 0 1905 141 3 7 chr11 128409272 128409562 -20373910 - AluJb SINE Alu -23 289 1 923 247 91 102 chr11 128409765 128410330 -20373142 + MLT1H1 LTR MaLR 1 555 0 246 375 38 34 chr11 128410593 128410857 -20372615 - L2 LINE L2 -464 2850 2586 892 143 0 8 chr11 128410962 128411095 -20372377 + FLAM_C SINE Alu 1 132 -1 476 70 0 0 chr11 128411519 128411576 -20371896 + AluSq/x SINE Alu 73 129 -183 371 338 19 80 chr11 128411578 128411689 -20371783 - L2 LINE L2 -2063 1251 1135 2177 105 0 7 chr11 128411689 128411994 -20371478 + AluSx SINE Alu 1 303 -9 371 338 19 80 chr11 128411994 128412258 -20371214 - L2 LINE L2 -2179 1135 899 1997 128 17 0 chr11 128412347 128412643 -20370829 - AluSx SINE Alu -11 301 1 958 122 0 0 chr11 128412921 128413052 -20370420 - AluJo SINE Alu -178 134 4 1440 191 69 0 chr11 128413321 128413598 -20369874 + AluJo SINE Alu 1 296 -16 2162 92 0 0 chr11 128413795 128414088 -20369384 + AluY SINE Alu 1 293 -18 285 324 148 61 chr11 128414172 128414446 -20369026 + L2 LINE L2 2402 2728 -586 2183 122 0 0 chr11 128414446 128414758 -20368714 + AluSx SINE Alu 1 312 0 285 324 148 61 chr11 128414758 128414909 -20368563 + L2 LINE L2 2728 2864 -450 6660 48 8 56 chr11 128415046 128416066 -20367406 + SVA Other Other 439 1410 0 332 250 57 0 chr11 128416132 128416220 -20367252 - L1MC4 LINE L1 -175 7867 7775 333 252 84 30 chr11 128416287 128416418 -20367054 - L1MC4 LINE L1 -274 7768 7631 293 277 250 31 chr11 128416425 128416685 -20366787 + L2 LINE L2 2997 3313 0 1606 208 65 11 chr11 128416712 128417082 -20366390 + MLT1B LTR MaLR 1 390 0 23 0 0 0 chr11 128417408 128417431 -20366041 + AT_rich Low_complexity Low_complexity 1 23 0 1742 146 17 14 chr11 128417431 128417726 -20365746 + AluSx SINE Alu 1 296 -16 2446 56 0 3 chr11 128418280 128418582 -20364890 + AluY SINE Alu 1 301 -10 2059 122 3 25 chr11 128418769 128419088 -20364384 - AluSx SINE Alu 0 312 1 1878 151 0 17 chr11 128419153 128419451 -20364021 - AluJo SINE Alu -19 293 1 761 303 19 0 chr11 128419990 128420198 -20363274 + L3 LINE CR1 1299 1510 -67 224 157 39 0 chr11 128420304 128420355 -20363117 + (CATA)n Simple_repeat Simple_repeat 2 54 0 1390 209 10 10 chr11 128420395 128420701 -20362771 + AluJo SINE Alu 1 306 -6 442 260 146 51 chr11 128420727 128420837 -20362635 - L1ME4a LINE L1 -91 6030 5932 186 43 0 0 chr11 128420837 128420860 -20362612 + (TTG)n Simple_repeat Simple_repeat 2 24 0 442 260 146 51 chr11 128420860 128421003 -20362469 - L1ME4a LINE L1 -189 5932 5753 2371 57 0 13 chr11 128421016 128421314 -20362158 + AluY SINE Alu 1 294 -17 463 193 40 107 chr11 128424200 128424350 -20359122 + MIR SINE MIR 47 186 -76 190 231 22 0 chr11 128425079 128425170 -20358302 + (CCCTG)n Simple_repeat Simple_repeat 4 96 0 200 167 0 37 chr11 128425264 128425318 -20358154 + CT-rich Low_complexity Low_complexity 1 52 0 2304 81 3 0 chr11 128425697 128425994 -20357478 + AluY SINE Alu 1 298 -13 2065 125 0 0 chr11 128426003 128426298 -20357174 + AluSx SINE Alu 1 295 -17 1354 150 48 51 chr11 128428746 128429019 -20354453 + AluJo SINE Alu 22 293 -19 484 246 141 25 chr11 128429022 128429221 -20354251 - MIR SINE MIR -5 257 36 2401 78 0 0 chr11 128429508 128429817 -20353655 + AluSc SINE Alu 1 309 0 207 246 92 0 chr11 128429931 128429996 -20353476 + L2 LINE L2 3153 3223 -49 203 155 0 86 chr11 128430247 128430305 -20353167 + GA-rich Low_complexity Low_complexity 4 56 0 506 229 147 18 chr11 128433430 128433600 -20349872 + MIR SINE MIR 63 254 -8 23 68 0 0 chr11 128433810 128433854 -20349618 + GC_rich Low_complexity Low_complexity 1 44 0 288 288 101 14 chr11 128436205 128436344 -20347128 - MIR SINE MIR -3 259 109 1166 181 98 0 chr11 128437286 128437490 -20345982 + MER58A DNA MER1_type 1 224 0 2113 151 0 0 chr11 128443043 128443355 -20340117 - AluJb SINE Alu 0 312 1 201 281 85 0 chr11 128443355 128443437 -20340035 + MIR SINE MIR 122 210 -52 396 284 39 10 chr11 128444012 128444114 -20339358 - L2 LINE L2 0 3272 3168 251 102 41 0 chr11 128444346 128444395 -20339077 + L1MD2 LINE L1 5848 5898 -461 1055 159 6 0 chr11 128444402 128444572 -20338900 + AluJb SINE Alu 135 305 -7 1451 236 82 15 chr11 128444588 128444991 -20338481 + L1MD2 LINE L1 5914 6343 -16 2303 94 0 0 chr11 128445063 128445362 -20338110 - AluSc SINE Alu -10 299 1 1090 161 55 10 chr11 128445453 128445652 -20337820 + AluJb SINE Alu 86 293 -19 2155 87 0 17 chr11 128445822 128446120 -20337352 - AluSx SINE Alu -19 293 1 886 202 155 0 chr11 128446482 128446695 -20336777 + MIR SINE MIR 17 262 0 547 308 71 25 chr11 128446778 128447100 -20336372 - HAL1 LINE L1 -1 2506 2170 2356 82 0 22 chr11 128447100 128447417 -20336055 - AluSg SINE Alu 0 310 1 1856 161 3 7 chr11 128447417 128447722 -20335750 - AluSx SINE Alu -8 304 1 387 272 104 0 chr11 128447847 128447972 -20335500 + L2 LINE L2 3176 3313 0 215 176 14 108 chr11 128448487 128448561 -20334911 + MIR SINE MIR 180 246 -16 2336 78 0 7 chr11 128448652 128448961 -20334511 - AluSc SINE Alu 0 309 3 793 231 28 57 chr11 128449809 128449905 -20333567 - MER3 DNA MER1_type -2 207 110 1664 119 0 134 chr11 128449905 128450087 -20333385 - AluSx SINE Alu -15 297 92 234 0 0 0 chr11 128450087 128450113 -20333359 + (TA)n Simple_repeat Simple_repeat 1 26 0 2381 58 0 3 chr11 128450114 128450407 -20333065 - AluY SINE Alu -19 292 1 1664 119 0 134 chr11 128450407 128450565 -20332907 - AluSx SINE Alu -219 93 1 1516 164 77 7 chr11 128450567 128450841 -20332631 - AluJo SINE Alu -19 293 1 793 231 28 57 chr11 128450841 128450953 -20332519 - MER3 DNA MER1_type -100 109 2 1942 115 37 0 chr11 128451140 128451435 -20332037 - AluSq SINE Alu -7 306 1 216 274 29 69 chr11 128451932 128452034 -20331438 - MIR3 SINE MIR -8 200 103 183 304 0 0 chr11 128453652 128453698 -20329774 - L2 LINE L2 -8 3264 3219 761 204 116 0 chr11 128454511 128454658 -20328814 + FRAM SINE Alu 1 164 -2 1669 153 50 4 chr11 128454959 128455240 -20328232 - AluJo SINE Alu -8 304 11 2367 104 0 0 chr11 128457355 128457653 -20325819 - AluSx SINE Alu -14 298 1 359 304 159 43 chr11 128458305 128458512 -20324960 - L2 LINE L2 -16 3256 3026 2333 114 0 0 chr11 128459762 128460068 -20323404 - AluSx SINE Alu -6 306 1 2222 107 7 26 chr11 128460842 128461150 -20322322 - AluSx SINE Alu -10 302 1 276 133 0 0 chr11 128461218 128461263 -20322209 - Alu SINE Alu -20 282 238 2304 93 0 0 chr11 128462164 128462453 -20321019 - AluSg SINE Alu -19 291 3 2518 61 0 23 chr11 128463324 128463634 -20319838 - AluY SINE Alu -8 303 1 1128 221 22 0 chr11 128463683 128463909 -20319563 - MIR SINE MIR -21 241 11 21 57 0 0 chr11 128466846 128466881 -20316591 + GC_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr11 128467274 128467310 -20316162 + GC_rich Low_complexity Low_complexity 1 36 0 254 255 0 73 chr11 128467470 128467662 -20315810 + G-rich Low_complexity Low_complexity 1 178 0 325 276 121 43 chr11 128469186 128469302 -20314170 + L2 LINE L2 3148 3272 0 566 176 0 20 chr11 128469539 128469641 -20313831 + MER2 DNA MER2_type 2 101 -244 1097 120 68 0 chr11 128469698 128469890 -20313582 + MER2 DNA MER2_type 83 287 -58 2512 58 0 3 chr11 128469915 128470209 -20313263 - AluY SINE Alu -18 293 1 1587 106 4 35 chr11 128470209 128470435 -20313037 - AluSg/x SINE Alu -9 303 85 541 158 45 45 chr11 128470459 128470592 -20312880 - L1MA5 LINE L1 0 6300 6168 270 170 43 0 chr11 128470592 128470639 -20312833 + MER2 DNA MER2_type 278 326 -19 2059 137 0 0 chr11 128470682 128470974 -20312498 - AluSx SINE Alu -20 292 1 2251 112 3 0 chr11 128470981 128471285 -20312187 - AluY SINE Alu -6 305 1 641 211 21 7 chr11 128471347 128471489 -20311983 - MIR SINE MIR -54 208 65 831 202 136 35 chr11 128471522 128471720 -20311752 - MIR SINE MIR 0 262 45 1834 182 0 3 chr11 128471794 128472090 -20311382 - AluJo SINE Alu -13 299 5 282 138 0 3 chr11 128472328 128472402 -20311070 + Alu SINE Alu 247 311 0 1617 162 24 21 chr11 128472852 128473142 -20310330 + AluJb SINE Alu 15 305 -7 879 319 65 87 chr11 128474655 128474785 -20308687 - L3 LINE CR1 -67 1510 1379 1880 129 6 75 chr11 128474785 128475119 -20308353 + AluJb SINE Alu 1 311 -1 2287 108 7 0 chr11 128475120 128475417 -20308055 + AluSx SINE Alu 1 299 -13 879 319 65 87 chr11 128475417 128475474 -20307998 - L3 LINE CR1 -198 1379 1322 1566 107 65 0 chr11 128475474 128475611 -20307861 + AluSq SINE Alu 1 158 -155 2107 118 6 29 chr11 128475611 128475925 -20307547 + AluSx SINE Alu 1 307 -5 1566 107 65 0 chr11 128475925 128476003 -20307469 + AluSq SINE Alu 158 230 -83 879 319 65 87 chr11 128476003 128476014 -20307458 - L3 LINE CR1 -255 1322 1312 2395 101 0 0 chr11 128476014 128476310 -20307162 + AluSc SINE Alu 1 296 -13 879 319 65 87 chr11 128476310 128476830 -20306642 - L3 LINE CR1 -265 1312 804 2237 112 0 3 chr11 128477285 128477580 -20305892 + AluSx SINE Alu 1 294 -18 2165 106 3 0 chr11 128477843 128478160 -20305312 - AluSx SINE Alu 0 318 1 691 178 16 16 chr11 128478435 128478564 -20304908 - AluJo SINE Alu -178 134 6 1788 181 3 0 chr11 128478708 128478995 -20304477 - AluJb SINE Alu -24 288 1 1911 139 0 21 chr11 128479367 128479677 -20303795 - AluSc SINE Alu 0 304 1 878 113 0 57 chr11 128479694 128479835 -20303637 - AluSq/x SINE Alu -180 133 1 1625 164 77 7 chr11 128479837 128480111 -20303361 - AluJo SINE Alu -19 293 1 487 279 0 0 chr11 128480112 128480223 -20303249 - MER3 DNA MER1_type -97 112 2 189 0 0 0 chr11 128480410 128480431 -20303041 + (T)n Simple_repeat Simple_repeat 1 21 0 2246 117 0 3 chr11 128480940 128481239 -20302233 + AluSx SINE Alu 1 298 -14 1775 151 50 4 chr11 128483354 128483633 -20299839 + AluJo SINE Alu 11 302 -10 760 204 116 0 chr11 128483936 128484083 -20299389 - FRAM SINE Alu -2 164 1 192 286 0 0 chr11 128484896 128484938 -20298534 + L2 LINE L2 3219 3260 -12 230 274 29 69 chr11 128486559 128486661 -20296811 + MIR3 SINE MIR 103 200 -8 1891 140 7 10 chr11 128487158 128487458 -20296014 + AluSx SINE Alu 1 299 -13 402 186 29 0 chr11 128487465 128487567 -20295905 - L1MEc LINE L1 -4081 2640 2536 2388 103 0 3 chr11 128487778 128488088 -20295384 - AluSq SINE Alu -4 309 1 384 239 30 30 chr11 128488097 128488119 -20295353 - L1MA10 LINE L1 0 6334 6313 1011 242 108 6 chr11 128488119 128488479 -20294993 - L1ME1 LINE L1 -9 6157 5761 706 225 51 68 chr11 128488506 128488723 -20294749 - L1MEc LINE L1 -4726 1814 1606 2078 152 0 10 chr11 128488723 128489033 -20294439 - AluJb SINE Alu -5 307 1 706 225 51 68 chr11 128489033 128489210 -20294262 - L1MEc LINE L1 -4934 1606 1427 848 161 0 0 chr11 128489217 128489347 -20294125 - AluSg/x SINE Alu 0 310 181 446 224 24 0 chr11 128489409 128489494 -20293978 - FLAM_A SINE Alu -37 105 19 2390 221 88 32 chr11 128489494 128489803 -20293669 - L1ME1 LINE L1 -869 5277 4987 1831 148 0 55 chr11 128489803 128490113 -20293359 + AluJb SINE Alu 1 293 -19 2390 221 88 32 chr11 128490113 128490227 -20293245 - L1ME1 LINE L1 -1159 4987 4881 2856 179 80 27 chr11 128490227 128490901 -20292571 - MER67C LTR ERV1 0 710 1 2390 221 88 32 chr11 128490901 128491215 -20292257 - L1ME1 LINE L1 -1265 4881 4498 1062 159 96 40 chr11 128491244 128491495 -20291977 - LTR48B LTR ERV1 0 644 380 798 168 7 14 chr11 128491497 128491640 -20291832 + FLAM_C SINE Alu 2 143 0 496 160 123 144 chr11 128491640 128491737 -20291735 - LTR48 LTR ERV1 -256 531 438 1990 148 0 3 chr11 128491737 128492027 -20291445 - AluJb SINE Alu -14 298 10 496 160 123 144 chr11 128492027 128492110 -20291362 - LTR48 LTR ERV1 -349 438 355 383 192 14 0 chr11 128492110 128492183 -20291289 + Tigger5 DNA MER2_type 1 74 -2249 362 208 0 0 chr11 128492188 128492260 -20291212 - Tigger5 DNA MER2_type -4 2319 2248 333 182 0 0 chr11 128492272 128492327 -20291145 + Tigger5 DNA MER2_type 2268 2322 -1 1164 193 73 56 chr11 128492331 128492611 -20290861 - LTR48 LTR ERV1 -439 348 74 1655 166 3 60 chr11 128492611 128492798 -20290674 - AluJb SINE Alu 0 312 151 2057 124 0 50 chr11 128492798 128493121 -20290351 - AluSx SINE Alu -5 307 1 1655 166 3 60 chr11 128493121 128493264 -20290208 - AluJb SINE Alu -161 151 1 1988 157 0 10 chr11 128493268 128493573 -20289899 - AluSx SINE Alu -10 302 1 1164 193 73 56 chr11 128493573 128493629 -20289843 - LTR48 LTR ERV1 -715 72 1 1034 265 39 6 chr11 128493645 128493981 -20289491 - L1MEc LINE L1 -6028 693 347 1581 176 29 4 chr11 128494184 128494457 -20289015 - AluJo SINE Alu -2 310 31 915 171 40 7 chr11 128494457 128494609 -20288863 + AluJo/FRAM SINE Alu 135 291 -21 1988 95 0 4 chr11 128494710 128494983 -20288489 + L1PA8 LINE L1 5893 6164 -8 21 0 0 0 chr11 128494983 128495004 -20288468 + AT_rich Low_complexity Low_complexity 1 21 0 1817 166 95 20 chr11 128495206 128495712 -20287760 - Charlie1 DNA MER1_type -1 2760 2217 207 0 0 0 chr11 128495734 128495757 -20287715 + (TTA)n Simple_repeat Simple_repeat 2 24 0 304 219 98 90 chr11 128495852 128495925 -20287547 - MER34 LTR ERV1 0 542 471 3858 129 8 45 chr11 128495925 128496551 -20286921 - LTR26 LTR ERV1 0 603 1 304 219 98 90 chr11 128496551 128496701 -20286771 - MER34 LTR ERV1 -71 471 364 2341 101 0 19 chr11 128496731 128497047 -20286425 - AluSq SINE Alu -3 310 1 1950 145 16 30 chr11 128497054 128497358 -20286114 - AluSq SINE Alu -13 300 1 1761 245 57 10 chr11 128497361 128497953 -20285519 + L1 LINE L1 2703 3322 -2824 189 0 0 0 chr11 128498089 128498110 -20285362 + (A)n Simple_repeat Simple_repeat 1 21 0 715 145 8 0 chr11 128498881 128498998 -20284474 + MER65A LTR ERV1 1 118 -327 251 175 0 0 chr11 128498998 128499038 -20284434 + Alu SINE Alu 1 40 -259 2232 103 0 29 chr11 128499038 128499349 -20284123 + AluSx SINE Alu 2 303 -9 2278 105 3 3 chr11 128499359 128499664 -20283808 + AluSp SINE Alu 1 305 -8 445 161 46 0 chr11 128499683 128499770 -20283702 + MER65A LTR ERV1 354 444 -1 2330 104 0 0 chr11 128499884 128500181 -20283291 + AluSq SINE Alu 1 297 -16 2113 119 0 3 chr11 128500184 128500496 -20282976 + AluSx SINE Alu 1 311 0 1288 79 0 0 chr11 128500698 128500850 -20282622 - AluSq/x SINE Alu -161 152 1 2161 117 21 0 chr11 128501112 128501402 -20282070 - AluSx SINE Alu -12 300 5 5242 144 19 26 chr11 128501593 128502371 -20281101 + L1MA6 LINE L1 5276 6058 -242 1980 103 6 115 chr11 128502371 128502506 -20280966 + AluSp SINE Alu 1 149 -154 2276 111 7 3 chr11 128502506 128502813 -20280659 + AluSx SINE Alu 1 308 -4 1980 103 6 115 chr11 128502813 128503017 -20280455 + AluSp SINE Alu 149 303 0 5242 144 19 26 chr11 128503017 128503157 -20280315 + L1MA6 LINE L1 6058 6189 -111 2275 96 3 7 chr11 128503157 128503458 -20280014 + AluSc SINE Alu 1 300 -9 5242 144 19 26 chr11 128503458 128503565 -20279907 + L1MA6 LINE L1 6189 6295 -5 1634 194 10 13 chr11 128503573 128503877 -20279595 + AluJo SINE Alu 1 303 -9 942 243 127 4 chr11 128504016 128504275 -20279197 + L2 LINE L2 3023 3313 0 1083 120 0 0 chr11 128504470 128504620 -20278852 - AluSx SINE Alu -15 294 145 1084 125 0 20 chr11 128504720 128504872 -20278600 - AluSx SINE Alu -153 159 11 598 248 21 1 chr11 128504878 128505080 -20278392 + L1MEc LINE L1 2319 2495 -3720 236 0 0 0 chr11 128505135 128505168 -20278304 - L1MA3 LINE L1 0 6305 6273 664 208 89 50 chr11 128505168 128505325 -20278147 + MER34C LTR ERV1 25 193 -392 2641 30 0 3 chr11 128505325 128505622 -20277850 - AluY SINE Alu -15 296 1 664 208 89 50 chr11 128505622 128505666 -20277806 + MER34C LTR ERV1 193 234 -351 320 239 54 0 chr11 128505863 128505955 -20277517 + LTR48 LTR ERV1 379 475 -312 286 263 101 42 chr11 128505962 128506090 -20277382 + MER34C LTR ERV1 356 504 -81 2295 77 17 3 chr11 128506090 128506377 -20277095 + AluSg SINE Alu 2 292 -18 286 263 101 42 chr11 128506377 128506465 -20277007 + MER34C LTR ERV1 504 585 0 411 221 35 48 chr11 128506465 128506555 -20276917 + L1MEc LINE L1 2503 2592 -3623 2003 163 10 0 chr11 128506555 128506856 -20276616 + AluJb SINE Alu 1 304 -8 411 221 35 48 chr11 128506856 128506910 -20276562 + L1MEc LINE L1 2592 2645 -3570 243 0 0 0 chr11 128506927 128506954 -20276518 + (CA)n Simple_repeat Simple_repeat 2 28 0 1717 170 3 7 chr11 128506980 128507268 -20276204 + AluJo SINE Alu 1 287 -25 2035 78 0 63 chr11 128507275 128507594 -20275878 + AluY SINE Alu 1 299 -12 2727 216 62 67 chr11 128507624 128507718 -20275754 + L1M4 LINE L1 3758 3851 -2295 1945 118 0 0 chr11 128507718 128507998 -20275474 + AluSx SINE Alu 1 280 -32 2727 216 62 67 chr11 128507998 128508077 -20275395 + L1M4 LINE L1 3851 3929 -2217 2108 111 0 0 chr11 128508077 128508366 -20275106 - AluSx SINE Alu -23 289 1 2727 216 62 67 chr11 128508366 128508710 -20274762 + L1M4 LINE L1 3929 4273 -1873 2264 85 3 0 chr11 128508710 128509016 -20274456 + AluSp SINE Alu 1 307 -6 2727 216 62 67 chr11 128509016 128509388 -20274084 + L1M4 LINE L1 4273 4646 -1500 1691 161 39 3 chr11 128509388 128509674 -20273798 + AluJb SINE Alu 1 296 -16 2727 216 62 67 chr11 128509674 128509801 -20273671 + L1M4 LINE L1 4646 4772 -1374 2098 87 7 10 chr11 128509803 128510101 -20273371 - AluSx SINE Alu -15 297 1 344 298 0 0 chr11 128510118 128510202 -20273270 - MER5A DNA MER1_type -48 141 58 203 296 28 74 chr11 128510287 128510395 -20273077 + L2 LINE L2 3154 3256 -16 223 303 30 0 chr11 128510665 128510731 -20272741 - MIR SINE MIR -6 256 189 2065 100 0 10 chr11 128510764 128511055 -20272417 - AluSq SINE Alu -4 309 22 548 222 44 129 chr11 128511167 128511415 -20272057 - MIR SINE MIR -11 251 25 2206 88 0 3 chr11 128512964 128513259 -20270213 + AluSx SINE Alu 1 294 -18 1888 124 3 20 chr11 128513746 128514052 -20269420 - AluSx SINE Alu -11 301 1 237 240 39 106 chr11 128514180 128514284 -20269188 + L3b LINE CR1 1298 1394 -189 2368 74 0 0 chr11 128514512 128514823 -20268649 - AluY SINE Alu 0 311 1 1402 191 69 0 chr11 128515020 128515297 -20268175 - AluJo SINE Alu -16 296 1 952 122 0 0 chr11 128515566 128515697 -20267775 + AluJo SINE Alu 4 134 -178 1981 125 17 0 chr11 128515975 128516271 -20267201 + AluSx SINE Alu 1 301 -11 428 319 24 85 chr11 128516360 128516624 -20266848 + L2 LINE L2 899 1135 -2179 2035 111 0 13 chr11 128516624 128516931 -20266541 - AluSx SINE Alu -9 303 1 428 319 24 85 chr11 128516931 128517042 -20266430 + L2 LINE L2 1135 1251 -2063 474 70 0 0 chr11 128517044 128517101 -20266371 - AluSq/x SINE Alu -183 129 73 874 143 0 8 chr11 128517525 128517658 -20265814 - FLAM_C SINE Alu -1 132 1 283 375 38 34 chr11 128517763 128518027 -20265445 + L2 LINE L2 2586 2850 -464 947 240 92 103 chr11 128518290 128518855 -20264617 - MLT1H1 LTR MaLR 0 555 1 1880 141 3 7 chr11 128519058 128519348 -20264124 + AluJb SINE Alu 1 289 -23 1956 103 62 3 chr11 128520080 128520372 -20263100 - AluSc SINE Alu 0 309 1 2453 210 55 68 chr11 128520636 128520948 -20262524 - L1ME2 LINE L1 -34 6130 5816 194 62 31 0 chr11 128520948 128520980 -20262492 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 1864 149 0 0 chr11 128520988 128521264 -20262208 - AluSx SINE Alu -36 276 1 2453 210 55 68 chr11 128521264 128521914 -20261558 - L1ME2 LINE L1 -355 5809 5172 1054 175 0 0 chr11 128522131 128522297 -20261175 - FAM SINE Alu -6 169 4 838 202 38 63 chr11 128522297 128522535 -20260937 - L1ME2 LINE L1 -1152 4994 4763 1778 128 0 53 chr11 128522535 128522839 -20260633 + AluSx SINE Alu 2 289 -23 1057 48 34 3 chr11 128572852 128573015 -20210457 - L1PA2 LINE L1 -246 5909 5746 228 35 0 0 chr11 128572994 128573023 -20210449 + L1P LINE L1 5308 5336 -818 * 185 311 68 29 chr11 128573235 128573338 -20210134 + MIR3 SINE MIR 88 194 -14 240 264 153 16 chr11 128576488 128576630 -20206842 + MIR SINE MIR 3 160 -65 216 310 0 0 chr11 128577566 128577624 -20205848 + (CA)n Simple_repeat Simple_repeat 1 58 0 548 237 91 11 chr11 128577804 128577990 -20205482 - L2 LINE L2 -685 2629 2429 187 335 99 39 chr11 128577989 128578171 -20205301 + MIR SINE MIR 11 203 -59 * 240 318 0 23 chr11 128579869 128579957 -20203515 + MIR3 SINE MIR 76 161 -47 2234 102 0 24 chr11 128581880 128582175 -20201297 - AluJb SINE Alu -24 288 1 373 279 134 58 chr11 128582392 128582564 -20200908 + MER5A DNA MER1_type 4 188 -1 343 222 43 51 chr11 128582630 128582747 -20200725 - MER5B DNA MER1_type -1 177 62 2165 133 3 0 chr11 128582747 128583048 -20200424 - AluJb SINE Alu -10 302 1 3158 146 44 10 chr11 128583058 128583648 -20199824 - L1MB4 LINE L1 -1 6179 5570 1832 86 0 0 chr11 128583665 128583909 -20199563 - AluSg SINE Alu 0 305 62 240 300 29 0 chr11 128583946 128584016 -20199456 - L2 LINE L2 0 3313 3242 1144 267 101 0 chr11 128584195 128584543 -20198929 + MLT1J1 LTR MaLR 64 446 0 549 443 73 27 chr11 128584931 128585109 -20198363 - L3 LINE CR1 -3 1574 1406 3063 144 47 25 chr11 128585109 128585721 -20197751 + L1MB8 LINE L1 5543 6168 -10 450 0 0 0 chr11 128585729 128585779 -20197693 + (CA)n Simple_repeat Simple_repeat 2 51 0 549 443 73 27 chr11 128585779 128585798 -20197674 - L3 LINE CR1 -177 1400 1383 589 182 27 0 chr11 128585798 128585908 -20197564 + MER81 DNA DNA 1 113 -1 549 443 73 27 chr11 128585908 128586357 -20197115 - L3 LINE CR1 -194 1383 888 2391 77 3 7 chr11 128586450 128586749 -20196723 + AluSg SINE Alu 1 298 -12 491 343 86 28 chr11 128586749 128587073 -20196399 - L2 LINE L2 -21 3251 2909 198 71 0 0 chr11 128587184 128587212 -20196260 + (TAA)n Simple_repeat Simple_repeat 2 29 0 652 295 65 0 chr11 128587217 128587434 -20196038 - MIR SINE MIR -12 250 20 371 280 16 33 chr11 128588336 128588518 -20194954 + CT-rich Low_complexity Low_complexity 1 179 0 344 22 22 0 chr11 128588610 128588655 -20194817 + (CA)n Simple_repeat Simple_repeat 2 47 0 267 250 43 43 chr11 128589702 128589818 -20193654 - MIR3 SINE MIR -80 128 13 277 331 62 45 chr11 128589955 128590133 -20193339 + L2 LINE L2 3092 3272 0 402 216 188 44 chr11 128591119 128591300 -20192172 + MIR SINE MIR 56 262 0 432 385 61 4 chr11 128591701 128591948 -20191524 + L3 LINE CR1 1311 1571 -6 198 103 0 0 chr11 128592374 128592403 -20191069 + (CA)n Simple_repeat Simple_repeat 2 30 0 857 230 61 13 chr11 128593063 128593293 -20190179 - MIR SINE MIR -11 251 11 216 0 0 0 chr11 128593409 128593433 -20190039 + (T)n Simple_repeat Simple_repeat 1 24 0 189 0 0 0 chr11 128593566 128593587 -20189885 + (T)n Simple_repeat Simple_repeat 1 21 0 237 338 12 0 chr11 128593587 128593667 -20189805 + MIR SINE MIR 100 180 -82 1477 173 35 50 chr11 128594244 128594527 -20188945 - AluJo SINE Alu -23 289 11 442 272 109 20 chr11 128595299 128595446 -20188026 + MIR3 SINE MIR 10 169 -39 197 189 0 0 chr11 128596497 128596534 -20186938 + MIR3 SINE MIR 118 154 -54 227 184 20 0 chr11 128597675 128597724 -20185748 - MIR SINE MIR -68 140 91 437 284 52 6 chr11 128598379 128598549 -20184923 - MER20B DNA MER1_type -17 202 22 224 241 17 0 chr11 128598698 128598756 -20184716 + MIR SINE MIR 91 149 -59 626 270 11 0 chr11 128599160 128599334 -20184138 + MER5B DNA MER1_type 1 176 -2 594 261 49 45 chr11 128600471 128600700 -20182772 - MIR SINE MIR 0 262 41 2251 123 3 3 chr11 128600734 128601044 -20182428 + AluSx SINE Alu 1 310 -2 198 329 51 0 chr11 128602187 128602266 -20181206 - L2 LINE L2 0 3272 3190 269 260 26 0 chr11 128602349 128602426 -20181046 - MIR SINE MIR -118 144 66 227 423 47 0 chr11 128602429 128602578 -20180894 - MIR SINE MIR -57 205 50 216 214 0 0 chr11 128603025 128603067 -20180405 - MIR SINE MIR -155 107 66 875 253 30 13 chr11 128603270 128603503 -20179969 - MIR SINE MIR -6 256 20 220 246 0 53 chr11 128603843 128603900 -20179572 + G-rich Low_complexity Low_complexity 5 58 0 1117 226 103 50 chr11 128605829 128606206 -20177266 + L3 LINE CR1 1180 1576 -1 192 77 0 0 chr11 128606338 128606364 -20177108 + (GGGAGA)n Simple_repeat Simple_repeat 5 30 0 426 69 0 0 chr11 128606644 128606702 -20176770 + (TG)n Simple_repeat Simple_repeat 2 59 0 559 260 82 36 chr11 128607160 128607356 -20176116 + MIR SINE MIR 52 256 -6 683 223 191 39 chr11 128607539 128607821 -20175651 - L1ME3A LINE L1 0 6170 5846 475 226 90 3 chr11 128607815 128607951 -20175521 + L1ME3A LINE L1 5698 5844 -334 * 318 237 148 37 chr11 128608150 128608285 -20175187 + L3 LINE CR1 1419 1568 -9 343 303 46 0 chr11 128609145 128609254 -20174218 - MIR SINE MIR -70 192 79 290 326 0 95 chr11 128609659 128609806 -20173666 + MIR SINE MIR 59 191 -71 380 221 11 21 chr11 128609896 128609991 -20173481 + MER5B DNA MER1_type 17 110 -68 196 304 61 26 chr11 128610087 128610202 -20173270 - L2 LINE L2 -45 3227 3109 520 226 14 55 chr11 128611344 128611490 -20171982 - MIR3 SINE MIR -34 174 35 292 286 48 36 chr11 128612229 128612313 -20171159 - L2 LINE L2 -20 3293 3209 276 102 0 0 chr11 128612328 128612377 -20171095 + (TG)n Simple_repeat Simple_repeat 2 50 0 325 274 17 43 chr11 128612803 128612920 -20170552 - L2 LINE L2 -1 3312 3199 658 294 14 2 chr11 128613301 128613485 -20169987 + L1ME LINE L1 5493 5677 -489 276 266 97 26 chr11 128613550 128613663 -20169809 + L1ME LINE L1 5704 5824 -297 410 268 54 83 chr11 128614530 128614757 -20168715 + L1M4 LINE L1 5173 5386 -802 1711 193 3 0 chr11 128614757 128615068 -20168404 + AluJo SINE Alu 1 312 0 410 268 54 83 chr11 128615068 128615111 -20168361 + L1M4 LINE L1 5386 5429 -759 2159 111 3 0 chr11 128616764 128617062 -20166410 + AluSx SINE Alu 1 299 -13 325 247 25 12 chr11 128617555 128617636 -20165836 + L2 LINE L2 3187 3268 -4 325 300 133 0 chr11 128618964 128619084 -20164388 + MIR SINE MIR 116 251 -11 408 40 0 0 chr11 128619303 128619353 -20164119 + (CA)n Simple_repeat Simple_repeat 2 51 0 441 54 0 0 chr11 128619467 128619523 -20163949 + (TG)n Simple_repeat Simple_repeat 2 57 0 442 266 105 20 chr11 128619567 128619767 -20163705 + MIR SINE MIR 32 243 -19 708 294 109 94 chr11 128621250 128621667 -20161805 - L2 LINE L2 -435 2879 2470 2417 68 0 3 chr11 128621667 128621976 -20161496 + AluY SINE Alu 1 308 -3 708 294 109 94 chr11 128621976 128622523 -20160949 - L2 LINE L2 -844 2470 1901 242 312 39 0 chr11 128622562 128622639 -20160833 + MIR SINE MIR 176 255 -7 2154 113 0 0 chr11 128623191 128623507 -20159965 - AluSx SINE Alu 0 316 1 356 296 39 37 chr11 128625210 128625250 -20158222 - L1ME3A LINE L1 -1 6169 6131 2084 114 0 7 chr11 128625250 128625558 -20157914 + AluSx SINE Alu 1 306 -6 356 296 39 37 chr11 128625558 128626209 -20157263 - L1ME3A LINE L1 -39 6131 5522 1806 50 0 0 chr11 128626209 128626430 -20157042 - AluY SINE Alu -90 221 1 356 296 39 37 chr11 128626430 128626524 -20156948 - L1ME3A LINE L1 -648 5522 5430 212 322 117 47 chr11 128627488 128627659 -20155813 - MIR SINE MIR -47 215 33 3169 204 41 14 chr11 128629839 128630041 -20153431 - L1MB3 LINE L1 0 6183 5988 1798 98 94 4 chr11 128630041 128630306 -20153166 - AluSx SINE Alu -23 289 1 3169 204 41 14 chr11 128630306 128630827 -20152645 - L1MB3 LINE L1 -195 5988 5440 369 0 0 0 chr11 128630941 128630982 -20152490 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 716 297 62 31 chr11 128630982 128631272 -20152200 - L2 LINE L2 -17 3296 2998 814 200 78 0 chr11 128631300 128631505 -20151967 - L2 LINE L2 -419 2895 2675 468 293 16 0 chr11 128632793 128632916 -20150556 - MER5B DNA MER1_type 0 178 54 521 221 24 16 chr11 128633175 128633302 -20150170 - MER5A DNA MER1_type -3 186 59 255 122 0 0 chr11 128633311 128633360 -20150112 + FLAM_A SINE Alu 84 132 -1 298 125 125 0 chr11 128633369 128633425 -20150047 - MER5A DNA MER1_type -123 66 4 307 235 94 49 chr11 128635678 128635884 -20147588 - LTR33 LTR ERVL 0 521 269 268 194 113 0 chr11 128639593 128639655 -20143817 + MIR SINE MIR 92 160 -102 2194 117 0 0 chr11 128639750 128640057 -20143415 + AluSx SINE Alu 1 307 -5 389 315 47 0 chr11 128640159 128640286 -20143186 - MIR SINE MIR -73 189 57 1371 268 145 22 chr11 128640325 128640870 -20142602 - MLT1L LTR MaLR 0 615 4 217 340 103 36 chr11 128641270 128641464 -20142008 - L2 LINE L2 -547 2767 2561 247 361 52 31 chr11 128641900 128642188 -20141284 + L1MEd LINE L1 541 834 -5285 495 285 16 0 chr11 128642214 128642407 -20141065 + L1MEd LINE L1 896 1091 -5028 425 289 181 7 chr11 128642408 128642557 -20140915 - MER5A DNA MER1_type -11 178 4 1527 299 66 26 chr11 128642577 128642716 -20140756 + L1MEd LINE L1 1170 1302 -4827 1935 105 7 4 chr11 128642716 128642992 -20140480 + AluSg SINE Alu 34 310 0 1527 299 66 26 chr11 128642992 128643490 -20139982 + L1MEd LINE L1 1302 1779 -4350 2018 132 0 13 chr11 128643490 128643794 -20139678 + AluSx SINE Alu 1 300 -12 1527 299 66 26 chr11 128643794 128644632 -20138840 + L1MEd LINE L1 1779 2661 -3468 187 361 0 0 chr11 128644669 128644730 -20138742 - L2 LINE L2 -831 2483 2423 452 238 69 25 chr11 128644832 128644889 -20138583 - MIR SINE MIR 0 262 209 2050 109 31 0 chr11 128644889 128645183 -20138289 - AluSx SINE Alu -9 303 1 452 238 69 25 chr11 128645183 128645285 -20138187 - MIR SINE MIR -53 209 96 264 262 178 0 chr11 128646907 128647014 -20136458 - L2 LINE L2 -3 3310 3185 1818 247 76 46 chr11 128647380 128648015 -20135457 - L1ME3A LINE L1 -28 6142 5489 381 312 35 21 chr11 128648243 128648384 -20135088 + L2 LINE L2 3126 3268 -4 1263 293 50 43 chr11 128649122 128649422 -20134050 - L1ME4a LINE L1 -1 6120 5824 1953 118 7 0 chr11 128649422 128649709 -20133763 - AluSx SINE Alu -15 297 9 1263 293 50 43 chr11 128649709 128650331 -20133141 - L1ME4a LINE L1 -297 5824 5188 2165 122 3 3 chr11 128650331 128650643 -20132829 - AluSq SINE Alu -1 312 1 1263 293 50 43 chr11 128650643 128650726 -20132746 - L1ME4a LINE L1 -933 5188 5107 217 239 0 0 chr11 128651630 128651676 -20131796 + (TG)n Simple_repeat Simple_repeat 1 46 0 404 257 0 7 chr11 128654194 128654346 -20129126 + (CA)n Simple_repeat Simple_repeat 1 151 0 552 219 0 17 chr11 128654364 128654542 -20128930 + (CA)n Simple_repeat Simple_repeat 1 175 0 538 235 0 16 chr11 128654571 128654754 -20128718 + (CA)n Simple_repeat Simple_repeat 1 180 0 278 326 129 30 chr11 128655296 128655692 -20127780 + L2 LINE L2 2171 2605 -709 192 40 0 0 chr11 128655777 128655802 -20127670 + (T)n Simple_repeat Simple_repeat 1 25 0 2133 101 0 28 chr11 128655918 128656235 -20127237 - AluSx SINE Alu -4 308 1 232 369 41 66 chr11 128656322 128656761 -20126711 + L2 LINE L2 2842 3269 -3 303 277 44 66 chr11 128658152 128658277 -20125195 + MIR3 SINE MIR 47 168 -40 353 257 188 0 chr11 128658277 128658421 -20125051 - MER5A DNA MER1_type 0 189 19 226 240 20 60 chr11 128659197 128659297 -20124175 + C-rich Low_complexity Low_complexity 5 100 0 228 225 0 0 chr11 128659256 128659296 -20124176 + polypyrimidine Low_complexity Low_complexity 2 41 0 278 282 47 0 chr11 128660111 128660196 -20123276 - MLT1I LTR MaLR -2 407 319 279 133 0 0 chr11 128660307 128660352 -20123120 + (CA)n Simple_repeat Simple_repeat 2 46 0 238 280 27 27 chr11 128660461 128660536 -20122936 - L2 LINE L2 -220 3052 2978 270 275 0 25 chr11 128661726 128661806 -20121666 + L2 LINE L2 3178 3255 -17 222 354 92 8 chr11 128661809 128661939 -20121533 - L2 LINE L2 -1 3312 3172 518 225 6 0 chr11 128662032 128662210 -20121262 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 254 286 6 0 chr11 128662235 128662406 -20121066 + (TGGA)n Simple_repeat Simple_repeat 1 172 0 297 303 8 0 chr11 128662424 128662543 -20120929 + (TGAA)n Simple_repeat Simple_repeat 2 121 0 601 194 12 0 chr11 128662545 128662705 -20120767 + (TGGA)n Simple_repeat Simple_repeat 4 165 0 185 320 58 39 chr11 128663823 128663926 -20119546 + MIR SINE MIR 48 152 -56 1412 146 43 43 chr11 128663966 128664267 -20119205 + AluJb SINE Alu 11 311 -1 405 226 113 57 chr11 128664640 128664799 -20118673 + MIR3 SINE MIR 22 189 -19 581 268 42 26 chr11 128666270 128666460 -20117012 + MIR SINE MIR 9 201 -61 550 302 55 6 chr11 128666897 128667079 -20116393 + MIR SINE MIR 29 219 -43 758 288 33 76 chr11 128667090 128667193 -20116279 + L3 LINE CR1 1101 1207 -370 1741 90 120 19 chr11 128667193 128667459 -20116013 + AluSg SINE Alu 1 293 -17 758 288 33 76 chr11 128667459 128667723 -20115749 + L3 LINE CR1 1207 1452 -125 507 271 26 26 chr11 128667747 128667902 -20115570 - MIR SINE MIR 0 262 108 364 258 45 128 chr11 128668082 128668401 -20115071 + L2 LINE L2 2977 3312 -1 1171 211 51 76 chr11 128668984 128669416 -20114056 + Charlie4a DNA MER1_type 21 441 -67 559 326 11 27 chr11 128670118 128670305 -20113167 - MER91A DNA MER1_type -3 193 10 558 240 0 20 chr11 128671878 128672028 -20111444 + MER33 DNA MER1_type 18 164 -160 234 0 0 0 chr11 128672181 128672207 -20111265 + (A)n Simple_repeat Simple_repeat 1 26 0 408 275 152 18 chr11 128672283 128672454 -20111018 + MIR SINE MIR 28 221 -41 427 312 87 23 chr11 128673383 128673556 -20109916 - MIR3 SINE MIR -1 207 24 555 319 29 15 chr11 128675302 128675506 -20107966 + MIR SINE MIR 1 207 -55 225 386 5 64 chr11 128675776 128675978 -20107494 + MIR SINE MIR 19 208 -54 348 345 94 57 chr11 128678048 128678089 -20105383 - L2 LINE L2 -3 3310 3272 709 317 44 4 chr11 128678089 128678338 -20105134 + MIR SINE MIR 2 260 -2 348 345 94 57 chr11 128678338 128678751 -20104721 - L2 LINE L2 -41 3272 2839 459 269 62 62 chr11 128679223 128679416 -20104056 + MIR3 SINE MIR 10 202 -6 634 293 169 4 chr11 128680247 128680520 -20102952 + MER115 DNA AcHobo 89 406 -287 1890 195 51 59 chr11 128683704 128684175 -20099297 - MLT1C LTR MaLR 0 467 1 599 157 30 15 chr11 128684403 128684537 -20098935 + MER58B DNA MER1_type 186 321 -20 488 179 20 73 chr11 128684635 128684786 -20098686 + MIR SINE MIR 120 262 0 2006 152 0 0 chr11 128684829 128685132 -20098340 + AluJb SINE Alu 1 303 -9 2202 101 3 0 chr11 128685143 128685440 -20098032 + AluSc SINE Alu 1 298 -11 410 266 32 45 chr11 128686611 128686765 -20096707 + MER5B DNA MER1_type 23 174 -4 1838 123 23 45 chr11 128686961 128687270 -20096202 - AluSx SINE Alu -10 302 1 814 174 107 49 chr11 128687289 128687513 -20095959 + MIR SINE MIR 25 261 -1 464 245 29 38 chr11 128687984 128688120 -20095352 + MIR SINE MIR 19 151 -71 201 214 0 107 chr11 128689036 128689120 -20094352 + L2 LINE L2 3193 3267 -5 242 224 26 40 chr11 128689666 128689742 -20093730 + MIR SINE MIR 109 183 -79 337 219 219 0 chr11 128689859 128689955 -20093517 + MIR SINE MIR 132 248 -14 212 100 25 0 chr11 128690188 128690228 -20093244 + (TG)n Simple_repeat Simple_repeat 2 42 0 251 330 53 0 chr11 128690839 128690933 -20092539 - L3 LINE CR1 -110 1467 1369 241 327 69 44 chr11 128690944 128691103 -20092369 - L3 LINE CR1 -348 1229 1067 314 296 26 0 chr11 128691254 128691355 -20092117 + MIR SINE MIR 64 168 -40 501 250 46 42 chr11 128691356 128691528 -20091944 - Charlie5 DNA MER1_type 0 2585 2410 2197 114 0 3 chr11 128691528 128691825 -20091647 + AluSq SINE Alu 1 296 -17 501 250 46 42 chr11 128691825 128691892 -20091580 - Charlie5 DNA MER1_type -175 2410 2345 205 204 0 0 chr11 128692209 128692253 -20091219 - L2 LINE L2 -19 3294 3251 979 177 20 30 chr11 128692950 128693148 -20090324 - AluJb SINE Alu 0 312 117 408 344 76 0 chr11 128693255 128693412 -20090060 + MER5B DNA MER1_type 8 176 -2 221 316 53 44 chr11 128693423 128693537 -20089935 - L3 LINE CR1 -333 1244 1130 2228 115 0 0 chr11 128693603 128693907 -20089565 - AluSq SINE Alu -8 305 2 342 330 41 41 chr11 128697075 128697345 -20086127 - L2 LINE L2 0 3272 3003 373 241 71 71 chr11 128698392 128698533 -20084939 + MIR3 SINE MIR 33 173 -35 523 248 16 8 chr11 128698732 128698861 -20084611 + L2 LINE L2 3182 3311 -2 313 270 9 43 chr11 128701098 128701213 -20082259 - MIR SINE MIR -35 227 117 210 262 255 28 chr11 128701289 128701430 -20082042 - MER5B DNA MER1_type 0 178 6 256 269 13 26 chr11 128701432 128701510 -20081962 - MIR3 SINE MIR -46 162 86 1334 244 84 16 chr11 128701518 128701945 -20081527 - MLT1C LTR MaLR -6 461 6 591 251 204 14 chr11 128702357 128702568 -20080904 + MIR SINE MIR 2 252 -10 742 315 61 107 chr11 128704113 128704576 -20078896 + L3 LINE CR1 790 1208 -369 1495 198 3 7 chr11 128704576 128704864 -20078608 + AluJo SINE Alu 22 308 -4 742 315 61 107 chr11 128704864 128705139 -20078333 + L3 LINE CR1 1208 1494 -83 352 182 230 0 chr11 128706066 128706177 -20077295 + MIR SINE MIR 17 151 -66 1720 148 0 49 chr11 128706300 128706624 -20076848 - AluJb SINE Alu -4 308 1 477 239 142 19 chr11 128706626 128706781 -20076691 - MIR SINE MIR -69 193 20 889 123 0 8 chr11 128707451 128707581 -20075891 - AluSq/x SINE Alu -183 129 1 430 345 35 14 chr11 128707805 128707950 -20075522 - MIR SINE MIR -87 175 28 464 268 0 8 chr11 128708135 128708262 -20075210 + MER112 DNA MER1_type 129 254 -6 377 336 34 0 chr11 128708493 128708639 -20074833 + L2 LINE L2 3122 3272 0 345 285 51 93 chr11 128709658 128709804 -20073668 + MIR SINE MIR 58 209 -53 1917 121 3 28 chr11 128709804 128710093 -20073379 + AluSx SINE Alu 1 282 -30 1365 101 5 39 chr11 128709886 128710095 -20073377 + AluSg/x SINE Alu 83 305 0 190 0 0 0 chr11 128710095 128710116 -20073356 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 345 285 51 93 chr11 128710116 128710180 -20073292 + MIR SINE MIR 210 262 0 411 351 30 6 chr11 128710379 128710544 -20072928 - MIR SINE MIR -48 214 46 380 340 20 41 chr11 128711103 128711300 -20072172 - MIR SINE MIR -50 212 20 241 261 246 8 chr11 128711520 128711650 -20071822 + MIR3 SINE MIR 43 203 -5 1518 159 3 80 chr11 128712012 128712326 -20071146 - AluJo SINE Alu -22 290 1 2304 93 0 0 chr11 128712366 128712668 -20070804 + AluSg1 SINE Alu 1 302 -7 302 217 14 0 chr11 128712738 128712807 -20070665 - L2 LINE L2 -222 3050 2981 1978 119 3 20 chr11 128713422 128713725 -20069747 + AluSx SINE Alu 1 298 -14 285 337 47 36 chr11 128714513 128714706 -20068766 + MIR SINE MIR 2 196 -66 201 74 0 0 chr11 128715884 128715911 -20067561 + (TC)n Simple_repeat Simple_repeat 1 27 0 340 257 48 121 chr11 128716812 128717018 -20066454 - L2 LINE L2 -95 3177 2987 297 357 14 14 chr11 128717532 128717675 -20065797 - MIR3 SINE MIR -8 200 58 925 164 0 0 chr11 128718230 128718382 -20065090 - AluJb SINE Alu -5 307 156 525 122 31 41 chr11 128718436 128718534 -20064938 - FLAM_C SINE Alu -1 142 46 338 296 72 24 chr11 128718568 128718693 -20064779 - MIR3 SINE MIR -63 145 15 734 297 21 0 chr11 128718894 128719086 -20064386 + MER91A DNA MER1_type 1 196 0 1815 162 6 13 chr11 128719333 128719647 -20063825 - AluJo SINE Alu 0 312 1 316 247 39 83 chr11 128719672 128719857 -20063615 - MIR SINE MIR -58 150 13 608 252 54 50 chr11 128720022 128720244 -20063228 - MIR SINE MIR -6 256 34 193 281 31 0 chr11 128721692 128721756 -20061716 - MIR3 SINE MIR -33 175 110 2212 75 10 3 chr11 128723267 128723559 -20059913 + AluSq SINE Alu 1 294 -19 246 326 29 51 chr11 128724150 128724288 -20059184 - MIR SINE MIR -28 234 100 2039 124 7 0 chr11 128724288 128724587 -20058885 + AluSx SINE Alu 1 301 -11 855 214 24 39 chr11 128725663 128725869 -20057603 - MER63A DNA MER1_type -5 205 3 252 327 37 9 chr11 128726050 128726157 -20057315 - MIR3 SINE MIR -14 194 85 215 327 181 24 chr11 128727608 128727813 -20055659 + MIR SINE MIR 20 256 -6 193 233 83 0 chr11 128728017 128728077 -20055395 - MIR SINE MIR 0 262 198 207 69 0 0 chr11 128728077 128728106 -20055366 + (TC)n Simple_repeat Simple_repeat 1 29 0 423 0 0 0 chr11 128728114 128728161 -20055311 + (TG)n Simple_repeat Simple_repeat 2 48 0 1840 118 32 4 chr11 128728162 128728441 -20055031 - AluSq SINE Alu -26 287 1 422 314 17 29 chr11 128729163 128729335 -20054137 + MER5A DNA MER1_type 16 185 -4 216 0 0 0 chr11 128729484 128729508 -20053964 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 459 63 0 0 chr11 128729724 128729787 -20053685 + (TG)n Simple_repeat Simple_repeat 1 63 0 2440 54 0 22 chr11 128730495 128730809 -20052663 + AluY SINE Alu 1 307 -4 240 35 0 0 chr11 128730965 128730994 -20052478 + (A)n Simple_repeat Simple_repeat 1 29 0 3048 198 43 19 chr11 128732806 128733132 -20050340 + L1MB8 LINE L1 5492 5809 -369 1003 166 0 6 chr11 128733132 128733289 -20050183 + FRAM SINE Alu 1 156 -10 3048 198 43 19 chr11 128733289 128733633 -20049839 + L1MB8 LINE L1 5809 6178 0 316 340 14 18 chr11 128733635 128733810 -20049662 + MIR SINE MIR 14 183 -62 649 221 32 7 chr11 128734645 128734799 -20048673 - MIR SINE MIR -81 181 24 1852 94 8 0 chr11 128735245 128735489 -20047983 + AluSg SINE Alu 34 279 -31 523 287 20 31 chr11 128735496 128735708 -20047764 + MIR SINE MIR 7 213 -49 * 548 306 58 29 chr11 128735689 128735749 -20047723 - MIR SINE MIR -10 252 195 462 79 0 0 chr11 128735749 128735812 -20047660 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 548 306 58 29 chr11 128735812 128735993 -20047479 - MIR SINE MIR -67 195 4 206 242 8 133 chr11 128736935 128737055 -20046417 + L3 LINE CR1 1463 1567 -10 433 261 31 23 chr11 128737617 128737747 -20045725 - MIR3 SINE MIR -38 170 40 290 329 80 0 chr11 128738556 128738693 -20044779 - MIR SINE MIR -56 206 59 2168 102 0 20 chr11 128738966 128739271 -20044201 - AluSx SINE Alu -13 299 1 449 330 51 0 chr11 128739538 128739714 -20043758 + MIR3 SINE MIR 1 185 -23 355 331 91 49 chr11 128741376 128741684 -20041788 + L3 LINE CR1 1008 1328 -249 278 284 136 0 chr11 128741735 128741823 -20041649 + L3 LINE CR1 1469 1568 -9 269 211 35 0 chr11 128741841 128741898 -20041574 + L2 LINE L2 3213 3271 -1 503 221 41 35 chr11 128742002 128742147 -20041325 - MER5A DNA MER1_type -1 188 43 326 349 58 32 chr11 128743627 128743816 -20039656 + MIR SINE MIR 21 214 -48 424 218 0 0 chr11 128744776 128744854 -20038618 - MER69 DNA AcHobo -2448 78 1 530 248 51 0 chr11 128744859 128744996 -20038476 - MIR SINE MIR -102 160 17 270 322 25 25 chr11 128745073 128745194 -20038278 - MIR3 SINE MIR -5 203 83 397 302 112 28 chr11 128745377 128745592 -20037880 + MIR SINE MIR 2 234 -28 390 303 21 14 chr11 128746018 128746163 -20037309 + MIR SINE MIR 117 262 0 2105 108 17 0 chr11 128746377 128746673 -20036799 + AluSx SINE Alu 1 301 -11 309 216 54 0 chr11 128747274 128747348 -20036124 - MIR SINE MIR -48 214 137 419 281 78 16 chr11 128747364 128747492 -20035980 - L2 LINE L2 0 3272 3137 198 139 209 0 chr11 128747476 128747519 -20035953 - MIR SINE MIR -72 136 85 * 935 286 57 40 chr11 128748712 128749167 -20034305 - L2 LINE L2 -1 3271 2809 184 381 72 6 chr11 128749671 128749852 -20033620 - L2 LINE L2 -464 2850 2658 197 305 19 57 chr11 128750461 128750566 -20032906 - MIR3 SINE MIR -14 194 94 432 299 38 43 chr11 128751038 128751077 -20032395 - MIR3 SINE MIR -3 205 167 2222 48 45 7 chr11 128751077 128751369 -20032103 + AluY SINE Alu 1 303 -8 432 299 38 43 chr11 128751369 128751513 -20031959 - MIR3 SINE MIR -41 167 23 356 242 40 10 chr11 128754012 128754111 -20029361 + MIR SINE MIR 49 150 -112 782 250 60 0 chr11 128754216 128754416 -20029056 + MIR SINE MIR 14 225 -37 1172 152 4 72 chr11 128754553 128754803 -20028669 - AluJo SINE Alu -31 281 49 254 300 105 74 chr11 128756184 128756374 -20027098 + MIR3 SINE MIR 11 206 -2 704 260 150 0 chr11 128756909 128757136 -20026336 - MIR SINE MIR 0 262 2 1124 227 103 37 chr11 128757583 128758121 -20025351 - L2 LINE L2 -12 3301 2730 180 365 24 0 chr11 128759428 128759513 -20023959 - MIR SINE MIR -113 149 63 545 245 151 0 chr11 128760475 128760614 -20022858 + MER5A DNA MER1_type 14 173 -16 23 0 0 0 chr11 128760970 128760993 -20022479 + AT_rich Low_complexity Low_complexity 1 23 0 289 315 110 0 chr11 128761120 128761266 -20022206 + L2 LINE L2 2609 2770 -544 403 296 4 9 chr11 128762093 128762234 -20021238 - MIR SINE MIR -61 147 9 246 62 0 0 chr11 128762261 128762293 -20021179 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 249 250 16 0 chr11 128762761 128762825 -20020647 - MIR SINE MIR -78 130 66 535 275 140 13 chr11 128762850 128763079 -20020393 + MIR SINE MIR 4 261 -1 318 50 0 0 chr11 128763666 128763706 -20019766 + (A)n Simple_repeat Simple_repeat 1 40 0 279 54 0 0 chr11 128763845 128763882 -20019590 + (A)n Simple_repeat Simple_repeat 1 37 0 534 245 133 7 chr11 128764606 128764749 -20018723 - MIR3 SINE MIR -15 193 33 213 39 0 0 chr11 128766249 128766275 -20017197 + (ATG)n Simple_repeat Simple_repeat 1 26 0 1983 149 0 19 chr11 128766665 128766980 -20016492 - AluJo SINE Alu -3 309 1 199 227 0 0 chr11 128767021 128767065 -20016407 - L2 LINE L2 -9 3304 3261 326 253 97 7 chr11 128767962 128768101 -20015371 + MIR SINE MIR 17 166 -87 314 262 36 0 chr11 128768507 128768591 -20014881 - MIR SINE MIR -80 182 96 215 254 246 48 chr11 128768731 128768857 -20014615 + MER5A DNA MER1_type 32 182 -7 269 250 16 16 chr11 128769604 128769668 -20013804 - L2 LINE L2 0 3313 3250 455 258 84 7 chr11 128769935 128770090 -20013382 - MIR3 SINE MIR -18 190 24 1858 295 141 30 chr11 128772049 128772986 -20010486 - L3 LINE CR1 -3 1574 534 285 258 16 0 chr11 128773140 128773202 -20010270 - MIR3 SINE MIR -30 178 116 359 370 30 5 chr11 128773212 128773412 -20010060 - L3 LINE CR1 -1061 516 312 291 54 0 0 chr11 128773473 128773510 -20009962 + (TA)n Simple_repeat Simple_repeat 1 37 0 2309 109 0 10 chr11 128773536 128773839 -20009633 + AluSx SINE Alu 1 300 -12 233 359 120 28 chr11 128774309 128774702 -20008770 - L2 LINE L2 -462 2852 2424 309 109 0 0 chr11 128774703 128774749 -20008723 + (T)n Simple_repeat Simple_repeat 1 46 0 667 232 105 5 chr11 128775188 128775378 -20008094 + MIR SINE MIR 46 254 -8 467 295 69 36 chr11 128776400 128776645 -20006827 - MIR SINE MIR -6 256 3 3242 141 31 9 chr11 128776837 128777185 -20006287 - L1MB3 LINE L1 0 6183 5815 2453 80 0 3 chr11 128777185 128777486 -20005986 - AluSc SINE Alu -9 300 1 3242 141 31 9 chr11 128777486 128777720 -20005752 - L1MB3 LINE L1 -368 5815 5588 447 176 0 126 chr11 128777720 128777879 -20005593 + L1PB4 LINE L1 6018 6156 0 1235 163 42 72 chr11 128777879 128778185 -20005287 - L1MB3 LINE L1 -574 5600 5304 422 276 16 16 chr11 128779115 128779242 -20004230 + LTR16B LTR ERVL 338 464 0 213 247 110 14 chr11 128779536 128779609 -20003863 + L2 LINE L2 3193 3272 0 2364 85 0 0 chr11 128780400 128780713 -20002759 + AluSx SINE Alu 1 313 0 470 282 146 60 chr11 128781776 128782077 -20001395 + L2 LINE L2 2946 3272 0 246 308 87 10 chr11 128783136 128783240 -20000232 + L2 LINE L2 3186 3297 -16 405 183 237 8 chr11 128783312 128783443 -20000029 - MIR SINE MIR -20 242 82 380 158 13 0 chr11 128783519 128783595 -19999877 + GA-rich Low_complexity Low_complexity 3 79 0 23 0 0 0 chr11 128783623 128783646 -19999826 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr11 128783863 128783884 -19999588 + AT_rich Low_complexity Low_complexity 1 21 0 328 160 53 13 chr11 128785243 128785318 -19998154 + MIR SINE MIR 83 160 -102 193 333 115 0 chr11 128786080 128786176 -19997296 + MIR SINE MIR 35 141 -67 2466 87 0 3 chr11 128786940 128787250 -19996222 - AluSc SINE Alu 0 309 1 212 203 31 47 chr11 128787329 128787393 -19996079 + L3 LINE CR1 1417 1479 -98 306 317 68 54 chr11 128787586 128787791 -19995681 - L3 LINE CR1 -2 1575 1368 598 215 100 33 chr11 128787809 128788022 -19995450 + MIR SINE MIR 40 262 0 401 250 30 0 chr11 128788386 128788486 -19994986 + MIR SINE MIR 71 173 -89 1578 201 19 48 chr11 128788610 128788988 -19994484 - MLT1A2 LTR MaLR -6 368 2 655 259 65 5 chr11 128789969 128790170 -19993302 + MIR SINE MIR 48 260 -2 184 340 43 0 chr11 128790182 128790276 -19993196 - L2 LINE L2 -38 3234 3137 186 152 0 0 chr11 128790758 128790791 -19992681 - MIR SINE MIR -118 144 112 21 0 0 0 chr11 128791526 128791547 -19991925 + AT_rich Low_complexity Low_complexity 1 21 0 1903 124 27 60 chr11 128792534 128792832 -19990640 - AluSx SINE Alu -24 288 1 842 223 67 18 chr11 128793370 128793594 -19989878 + MIR SINE MIR 5 239 -23 188 237 153 0 chr11 128793848 128793907 -19989565 - L3b LINE CR1 -3 1580 1513 2093 128 0 20 chr11 128793955 128794260 -19989212 + AluSq SINE Alu 6 304 -9 513 286 0 8 chr11 128794865 128794991 -19988481 - L2 LINE L2 0 3272 3148 224 279 25 0 chr11 128794999 128795078 -19988394 + L2 LINE L2 3184 3264 -8 380 296 2 0 chr11 128795638 128795755 -19987717 + MIR SINE MIR 15 133 -75 1501 203 9 22 chr11 128796055 128796371 -19987101 + MER58B DNA MER1_type 29 340 -1 305 325 73 13 chr11 128796854 128797005 -19986467 + MER117 DNA MER1_type 1 160 -37 1729 174 62 0 chr11 128799315 128799637 -19983835 + L1MB8 LINE L1 5492 5833 -345 1072 131 0 0 chr11 128799641 128799786 -19983686 + FRAM SINE Alu 1 145 -31 502 278 25 35 chr11 128799793 128800005 -19983467 + MIR SINE MIR 7 213 -49 * 550 306 58 29 chr11 128799986 128800046 -19983426 - MIR SINE MIR -10 252 195 534 70 0 0 chr11 128800046 128800117 -19983355 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 550 306 58 29 chr11 128800117 128800298 -19983174 - MIR SINE MIR -67 195 4 224 217 33 33 chr11 128801302 128801362 -19982110 + L3 LINE CR1 1508 1567 -10 427 261 31 23 chr11 128801924 128802054 -19981418 - MIR3 SINE MIR -38 170 40 289 329 80 0 chr11 128802864 128803001 -19980471 - MIR SINE MIR -56 206 59 1312 142 24 20 chr11 128803412 128803658 -19979814 + L1MB2 LINE L1 5776 6022 -149 1813 132 69 0 chr11 128803658 128803947 -19979525 + MER1B DNA MER1_type 1 309 -30 434 164 10 19 chr11 128803978 128804082 -19979390 + L1MB2 LINE L1 6065 6167 -4 1464 83 0 37 chr11 128804129 128804370 -19979102 + L1PA6 LINE L1 5923 6154 0 470 338 0 12 chr11 128804372 128804532 -19978940 + L3 LINE CR1 1407 1564 -13 517 289 83 15 chr11 128804628 128804832 -19978640 + L2 LINE L2 2915 3132 -181 1958 125 52 0 chr11 128805544 128805833 -19977639 + AluSx SINE Alu 1 304 -8 1148 147 30 0 chr11 128805867 128806064 -19977408 + MLT1B LTR MaLR 188 390 0 286 366 49 0 chr11 128806810 128806933 -19976539 + MIR3 SINE MIR 2 130 -78 306 242 0 0 chr11 128806956 128807018 -19976454 + L2 LINE L2 3211 3272 0 226 228 18 18 chr11 128807616 128807673 -19975799 + GA-rich Low_complexity Low_complexity 1 57 0 290 270 9 43 chr11 128808604 128808719 -19974753 + MIR SINE MIR 117 227 -35 430 264 35 0 chr11 128809250 128809394 -19974078 + L2 LINE L2 2617 2765 -549 205 250 0 0 chr11 128809512 128809560 -19973912 + L2 LINE L2 3008 3055 -217 2496 93 0 0 chr11 128809663 128809973 -19973499 + AluSq SINE Alu 1 310 -3 802 205 126 0 chr11 128810874 128811064 -19972408 - MER58A DNA MER1_type -2 222 9 496 280 16 33 chr11 128811069 128811176 -19972296 - MIR SINE MIR -32 230 126 1731 137 45 67 chr11 128811176 128811490 -19971982 + AluSx SINE Alu 1 307 -5 496 280 16 33 chr11 128811490 128811564 -19971908 - MIR SINE MIR -136 126 52 561 239 14 21 chr11 128811659 128811801 -19971671 - MIR SINE MIR -109 153 13 608 205 11 34 chr11 128812721 128812875 -19970597 + MIR SINE MIR 113 261 -1 417 284 0 0 chr11 128813053 128813148 -19970324 - MIR SINE MIR -115 147 53 296 331 54 60 chr11 128813258 128813590 -19969882 - L3 LINE CR1 -168 1409 1080 348 154 31 15 chr11 128813626 128813756 -19969716 + (TA)n Simple_repeat Simple_repeat 1 132 0 300 173 93 27 chr11 128813756 128813831 -19969641 + L1MC4 LINE L1 6613 6692 -1350 612 37 25 0 chr11 128813833 128813914 -19969558 - AluY SINE Alu -16 295 213 2368 136 9 26 chr11 128814273 128814699 -19968773 + L1MA5 LINE L1 5882 6300 0 343 356 73 5 chr11 128814767 128814972 -19968500 - L3 LINE CR1 -623 954 736 * 587 255 212 9 chr11 128814970 128815182 -19968290 + MIR SINE MIR 6 260 -2 1061 358 74 21 chr11 128815214 128815846 -19967626 - L3 LINE CR1 -847 730 65 300 83 0 0 chr11 128817822 128817870 -19965602 + (CAAAA)n Simple_repeat Simple_repeat 5 52 0 364 211 200 0 chr11 128818119 128818256 -19965216 + MIR SINE MIR 19 192 -61 411 83 0 0 chr11 128818258 128818318 -19965154 + (TG)n Simple_repeat Simple_repeat 1 60 0 726 247 23 46 chr11 128819010 128819229 -19964243 - MIR SINE MIR -2 260 47 1619 185 31 37 chr11 128820055 128821806 -19961666 + L1MB8 LINE L1 3744 5530 -648 2279 188 29 39 chr11 128821806 128821990 -19961482 + MLT1D LTR MaLR 1 185 -320 2284 104 0 0 chr11 128821990 128822277 -19961195 + AluSc SINE Alu 1 287 -22 2279 188 29 39 chr11 128822277 128822602 -19960870 + MLT1D LTR MaLR 185 505 0 1619 185 31 37 chr11 128822602 128823248 -19960224 + L1MB8 LINE L1 5530 6178 0 307 293 49 16 chr11 128823779 128823902 -19959570 + L2 LINE L2 3180 3306 -7 407 314 59 39 chr11 128824252 128824456 -19959016 - MIR SINE MIR -33 229 22 247 333 147 8 chr11 128824470 128824599 -19958873 + MIR3 SINE MIR 49 195 -13 276 30 0 0 chr11 128824858 128824891 -19958581 + (TTA)n Simple_repeat Simple_repeat 2 34 0 188 233 44 89 chr11 128825286 128825376 -19958096 + L2 LINE L2 3225 3310 -3 346 246 142 37 chr11 128826716 128826850 -19956622 + L2 LINE L2 3164 3311 -2 355 254 29 11 chr11 128827420 128827531 -19955941 - MIR SINE MIR -36 172 59 1580 255 63 27 chr11 128828118 128828639 -19954833 - MLT1F LTR MaLR 0 542 3 227 260 55 0 chr11 128828675 128828748 -19954724 - MER20B DNA MER1_type -651 132 56 302 298 127 19 chr11 128828945 128829103 -19954369 + MIR SINE MIR 73 247 -15 187 351 79 6 chr11 128829798 128829963 -19953509 - L2 LINE L2 -262 3051 2875 223 306 231 14 chr11 128829997 128830144 -19953328 - L2 LINE L2 -557 2757 2579 309 339 8 19 chr11 128831127 128831305 -19952167 - MIR SINE MIR -59 203 34 803 219 51 0 chr11 128831339 128831517 -19951955 + MER5A DNA MER1_type 3 189 0 307 119 0 0 chr11 128831798 128831840 -19951632 + MER81 DNA DNA 73 114 0 220 333 48 9 chr11 128832126 128832231 -19951241 + L3 LINE CR1 1380 1488 -89 451 290 102 34 chr11 128832245 128832421 -19951051 - MIR SINE MIR -55 207 20 547 161 25 68 chr11 128832452 128832570 -19950902 + MER81 DNA DNA 1 113 -1 1070 286 67 3 chr11 128833270 128833612 -19949860 + MLT1J1 LTR MaLR 71 434 -12 256 260 60 11 chr11 128833627 128833731 -19949741 - MIR SINE MIR -68 140 41 317 254 8 79 chr11 128834269 128834395 -19949077 - MIR SINE MIR -61 147 31 390 74 0 0 chr11 128835077 128835131 -19948341 + (TCCA)n Simple_repeat Simple_repeat 1 54 0 344 323 46 0 chr11 128835136 128835266 -19948206 - L2 LINE L2 -22 3250 3115 1049 213 83 0 chr11 128836149 128836389 -19947083 - MIR SINE MIR 0 262 3 247 212 45 0 chr11 128836442 128836508 -19946964 - MER5A DNA MER1_type -80 109 41 717 278 113 14 chr11 128837102 128837393 -19946079 + L1ME3A LINE L1 5848 6167 -3 906 181 28 87 chr11 128837794 128838004 -19945468 + MIR SINE MIR 23 217 -45 2327 89 0 26 chr11 128838004 128838317 -19945155 + AluY SINE Alu 1 305 -6 906 181 28 87 chr11 128838317 128838360 -19945112 + MIR SINE MIR 217 261 -1 467 256 19 31 chr11 128838791 128838951 -19944521 + L2 LINE L2 2895 3052 -220 539 253 132 0 chr11 128840120 128840294 -19943178 + MIR SINE MIR 61 257 -5 584 298 66 26 chr11 128840306 128840578 -19942894 - L3 LINE CR1 -112 1465 1183 273 211 42 28 chr11 128842758 128842829 -19940643 + MIR SINE MIR 30 101 -107 192 40 0 0 chr11 128842904 128842929 -19940543 + (CCCCAG)n Simple_repeat Simple_repeat 3 27 0 221 178 25 2 chr11 128844777 128844822 -19938650 + MIR SINE MIR 108 149 -59 550 286 62 42 chr11 128845087 128845328 -19938144 + MIR SINE MIR 10 255 -7 254 326 43 14 chr11 128845366 128845504 -19937968 + MIR3 SINE MIR 6 147 -61 225 220 140 60 chr11 128845533 128845633 -19937839 - MIR SINE MIR -108 154 47 272 226 0 16 chr11 128845930 128845992 -19937480 + L3 LINE CR1 1515 1575 -2 193 241 127 25 chr11 128847461 128847540 -19935932 - MIR SINE MIR -87 175 89 197 282 90 26 chr11 128848685 128848763 -19934709 - MIR SINE MIR -106 156 74 299 315 95 79 chr11 128848763 128849204 -19934268 + L3 LINE CR1 934 1381 -196 709 139 7 21 chr11 128849445 128849589 -19933883 + L1MA4A LINE L1 6159 6300 -3 423 0 0 0 chr11 128849644 128849691 -19933781 + (CA)n Simple_repeat Simple_repeat 2 48 0 2085 127 6 40 chr11 128849766 128850090 -19933382 + AluSp SINE Alu 1 313 0 2238 112 0 3 chr11 128850091 128850385 -19933087 + AluSg1 SINE Alu 1 293 -16 366 301 204 22 chr11 128850388 128850463 -19933009 - L1ME LINE L1 -338 5783 5723 2512 39 0 3 chr11 128850463 128850773 -19932699 - AluY SINE Alu 0 309 1 366 301 204 22 chr11 128850773 128850922 -19932550 - L1ME LINE L1 -398 5723 5517 188 267 27 67 chr11 128851250 128851325 -19932147 + MIR3 SINE MIR 131 202 -6 349 286 151 28 chr11 128852535 128852787 -19930685 - L1MC4a LINE L1 -1889 5919 5637 466 195 159 0 chr11 128852892 128853005 -19930467 - MIR3 SINE MIR -27 181 51 767 226 18 71 chr11 128853536 128853657 -19929815 + MIR SINE MIR 28 133 -129 1909 175 0 0 chr11 128853657 128853960 -19929512 + AluJb SINE Alu 1 303 -9 767 226 18 71 chr11 128853960 128854064 -19929408 + MIR SINE MIR 133 241 -21 221 183 255 0 chr11 128854139 128854220 -19929252 + MIR SINE MIR 54 151 -72 197 234 0 43 chr11 128854425 128854472 -19929000 + L2 LINE L2 3250 3294 -19 230 258 66 60 chr11 128854559 128854649 -19928823 + MIR SINE MIR 111 205 -57 2154 120 0 0 chr11 128854649 128854971 -19928501 + AluSx SINE Alu 1 322 0 230 258 66 60 chr11 128854971 128855030 -19928442 + MIR SINE MIR 205 262 0 616 248 0 7 chr11 128855287 128855428 -19928044 + MER5B DNA MER1_type 27 166 -12 636 248 0 7 chr11 128855755 128855896 -19927576 - MER5B DNA MER1_type -12 166 27 310 300 10 10 chr11 128857816 128857916 -19925556 - MIR SINE MIR -69 139 40 221 234 0 78 chr11 128858139 128858216 -19925256 - L2 LINE L2 -7 3265 3195 244 277 0 60 chr11 128859034 128859117 -19924355 + MIR SINE MIR 64 141 -67 654 267 34 6 chr11 128859263 128859439 -19924033 + MIR SINE MIR 33 213 -49 431 325 41 6 chr11 128859805 128859974 -19923498 + MIR SINE MIR 30 204 -58 235 276 171 0 chr11 128860049 128860154 -19923318 + MIR SINE MIR 90 212 -50 322 223 107 19 chr11 128860735 128860838 -19922634 - MIR SINE MIR -85 177 66 1273 118 90 0 chr11 128860957 128861135 -19922337 + AluSg/x SINE Alu 96 289 -23 333 230 149 7 chr11 128865998 128866117 -19917355 + MIR SINE MIR 32 163 -45 235 222 0 0 chr11 128867121 128867166 -19916306 + (TG)n Simple_repeat Simple_repeat 2 46 0 263 214 14 14 chr11 128867208 128867278 -19916194 + MIR SINE MIR 81 150 -112 836 318 38 28 chr11 128868012 128868411 -19915061 - L3 LINE CR1 -11 1566 1164 427 256 171 6 chr11 128868458 128868634 -19914838 + MIR3 SINE MIR 4 208 0 505 288 31 21 chr11 128869205 128869396 -19914076 + MIR SINE MIR 62 254 -8 2389 96 0 0 chr11 128869396 128869747 -19913725 + AluSx SINE Alu 1 312 0 396 219 132 0 chr11 128870466 128870580 -19912892 + MER5A DNA MER1_type 59 187 -2 272 216 0 54 chr11 128870514 128870588 -19912884 - MER5A DNA MER1_type -111 78 9 * 917 233 35 22 chr11 128870724 128870956 -19912516 - MIR SINE MIR -22 240 6 220 256 151 0 chr11 128870950 128871036 -19912436 - L2 LINE L2 -33 3239 3141 * 432 254 188 14 chr11 128872067 128872280 -19911192 + MIR SINE MIR 6 255 -7 193 263 18 0 chr11 128873260 128873317 -19910155 - MIR SINE MIR -86 122 65 600 271 8 84 chr11 128874311 128874562 -19908910 + MIR SINE MIR 31 262 0 194 170 0 21 chr11 128874903 128874950 -19908522 + (TG)n Simple_repeat Simple_repeat 2 47 0 925 241 12 36 chr11 128875046 128875299 -19908173 + MIR SINE MIR 6 252 -10 332 316 94 12 chr11 128876258 128876429 -19907043 - MIR3 SINE MIR -18 190 6 265 254 26 53 chr11 128876471 128876585 -19906887 - L3 LINE CR1 -325 1252 1142 2302 106 20 0 chr11 128876714 128877017 -19906455 - AluSx SINE Alu 0 312 4 242 260 0 0 chr11 128877066 128877116 -19906356 + L2 LINE L2 3262 3311 -2 396 234 11 21 chr11 128877712 128877983 -19905489 - AluJb SINE Alu 0 302 208 206 276 41 81 chr11 128877983 128878106 -19905366 + MIR SINE MIR 130 247 -15 1309 255 75 7 chr11 128878117 128878524 -19904948 - L1ME3A LINE L1 -5 6165 5726 357 217 13 0 chr11 128879353 128879437 -19904035 - MIR SINE MIR -67 141 57 308 317 10 20 chr11 128879497 128879598 -19903874 - MIR SINE MIR -108 154 55 253 287 10 59 chr11 128882041 128882142 -19901330 + MIR3 SINE MIR 104 199 -9 379 238 89 48 chr11 128882224 128882392 -19901080 - MER5B DNA MER1_type 0 178 4 479 329 81 0 chr11 128883055 128883277 -19900195 - MIR SINE MIR -7 255 16 574 286 196 0 chr11 128883427 128883616 -19899856 + MIR SINE MIR 3 228 -34 220 282 121 16 chr11 128883710 128883834 -19899638 + L2 LINE L2 3136 3272 0 343 0 0 41 chr11 128884455 128884504 -19898968 + (TG)n Simple_repeat Simple_repeat 1 47 0 198 118 0 0 chr11 128886132 128886166 -19897306 + (TAA)n Simple_repeat Simple_repeat 2 35 0 555 241 26 108 chr11 128886195 128886390 -19897082 - MIR SINE MIR -49 213 35 332 287 35 0 chr11 128886950 128887037 -19896435 - MIR3 SINE MIR -6 202 113 189 300 0 0 chr11 128887737 128887797 -19895675 - L2 LINE L2 -8 3264 3205 448 194 11 11 chr11 128888165 128888258 -19895214 - MIR SINE MIR 0 262 170 1915 125 45 14 chr11 128888431 128888600 -19894872 - AluSx SINE Alu -14 298 115 246 95 0 0 chr11 128888600 128888642 -19894830 + (TTTG)n Simple_repeat Simple_repeat 3 44 0 1915 125 45 14 chr11 128888642 128888761 -19894711 - AluSx SINE Alu -197 115 1 781 276 89 27 chr11 128888765 128889353 -19894119 + L1ME4a LINE L1 5465 6120 -1 320 242 30 10 chr11 128890095 128890194 -19893278 + LTR33 LTR ERVL 421 521 0 216 289 56 11 chr11 128890619 128890709 -19892763 + L2 LINE L2 3138 3231 -41 432 327 91 44 chr11 128890991 128891355 -19892117 + L3 LINE CR1 1130 1510 -67 300 204 42 148 chr11 128891762 128891904 -19891568 - MIR SINE MIR -123 139 13 1018 129 0 0 chr11 128892465 128892605 -19890867 + FRAM SINE Alu 1 139 -37 223 329 0 25 chr11 128893430 128893509 -19889963 - L2 LINE L2 -8 3264 3188 330 341 95 7 chr11 128893560 128893780 -19889692 + MIR SINE MIR 3 249 -13 779 229 130 17 chr11 128894054 128894285 -19889187 - MIR SINE MIR 0 262 6 1721 179 18 3 chr11 128894550 128894835 -19888637 - AluJb SINE Alu -23 289 1 1935 158 0 0 chr11 128895000 128895285 -19888187 + AluSx SINE Alu 10 294 -18 563 263 40 72 chr11 128897483 128897734 -19885738 - MIR SINE MIR -6 256 14 198 243 157 29 chr11 128899220 128899290 -19884182 + MIR SINE MIR 25 103 -105 2145 129 0 23 chr11 128899916 128900225 -19883247 + AluSx SINE Alu 1 302 -10 22 0 0 0 chr11 128900627 128900649 -19882823 + AT_rich Low_complexity Low_complexity 1 22 0 620 231 206 18 chr11 128902118 128902400 -19881072 + L1ME4a LINE L1 5785 6119 -2 270 0 0 0 chr11 128902583 128902613 -19880859 + (TG)n Simple_repeat Simple_repeat 2 31 0 338 323 32 39 chr11 128903229 128903384 -19880088 + MER20B DNA MER1_type 7 160 -623 2359 97 0 7 chr11 128903657 128903965 -19879507 + AluY SINE Alu 1 306 -5 413 294 133 19 chr11 128904586 128904797 -19878675 - MIR SINE MIR -15 247 13 695 311 13 13 chr11 128904823 128905058 -19878414 + MIR SINE MIR 22 256 -6 200 200 0 0 chr11 128905248 128905283 -19878189 + (CA)n Simple_repeat Simple_repeat 2 36 0 292 329 66 24 chr11 128906570 128906859 -19876613 - L1MC5 LINE L1 -25 7936 7636 283 254 30 0 chr11 128907216 128907283 -19876189 - MER113 DNA MER1_type? 0 521 453 988 185 13 0 chr11 128907317 128907468 -19876004 + AluJb SINE Alu 136 288 -24 250 315 114 2 chr11 128907699 128907819 -19875653 + MIR SINE MIR 19 148 -62 233 276 17 0 chr11 128908781 128908839 -19874633 + GA-rich Low_complexity Low_complexity 4 62 0 521 270 153 19 chr11 128909437 128909652 -19873820 + MIR SINE MIR 14 257 -5 401 311 6 37 chr11 128910282 128910446 -19873026 + MIR SINE MIR 40 198 -64 509 191 75 15 chr11 128911451 128911604 -19871868 + MIR3 SINE MIR 21 178 -30 231 274 75 9 chr11 128911656 128911762 -19871710 - L2 LINE L2 -11 3261 3149 2196 118 7 0 chr11 128912131 128912436 -19871036 + AluSc SINE Alu 1 307 -2 503 289 13 27 chr11 128912704 128912853 -19870619 - MIR SINE MIR -1 261 115 247 293 75 38 chr11 128913844 128913977 -19869495 - MIR3 SINE MIR -10 198 61 418 281 7 46 chr11 128914567 128914657 -19868815 + MIR SINE MIR 70 153 -109 351 0 0 0 chr11 128914657 128914696 -19868776 + (TAA)n Simple_repeat Simple_repeat 3 41 0 418 281 7 46 chr11 128914696 128914758 -19868714 + MIR SINE MIR 153 216 -46 21 0 0 0 chr11 128915148 128915169 -19868303 + AT_rich Low_complexity Low_complexity 1 21 0 697 264 40 0 chr11 128915865 128916039 -19867433 + MIR SINE MIR 24 204 -58 1177 211 81 3 chr11 128916089 128916374 -19867098 + L1ME1 LINE L1 5855 6161 -5 183 192 96 55 chr11 128916559 128916632 -19866840 + MIR3 SINE MIR 116 191 -17 237 256 113 42 chr11 128916845 128917013 -19866459 - MIR SINE MIR -2 260 81 526 290 16 21 chr11 128917098 128917284 -19866188 - MIR SINE MIR -3 259 75 1710 299 86 40 chr11 128917874 128918991 -19864481 - L2 LINE L2 0 3313 2250 1687 203 3 0 chr11 128918991 128919301 -19864171 - AluJo SINE Alu -1 311 1 1710 299 86 40 chr11 128919301 128919424 -19864048 - L2 LINE L2 -1063 2250 2134 2367 119 0 0 chr11 128919424 128919736 -19863736 - AluSq SINE Alu -1 312 1 1710 299 86 40 chr11 128919736 128919807 -19863665 - L2 LINE L2 -1179 2134 1942 2267 93 7 0 chr11 128919822 128920111 -19863361 + AluSx SINE Alu 1 291 -21 1085 102 0 6 chr11 128920111 128920278 -19863194 + (GGAA)n Simple_repeat Simple_repeat 3 168 0 264 357 82 12 chr11 128920294 128920465 -19863007 - MER5A DNA MER1_type -3 186 4 198 204 0 0 chr11 128921035 128921079 -19862393 - L2 LINE L2 -19 3294 3251 1015 177 20 30 chr11 128921776 128921974 -19861498 - AluJb SINE Alu 0 312 117 386 312 89 13 chr11 128922081 128922238 -19861234 + MER5B DNA MER1_type 8 176 -2 194 298 61 53 chr11 128922249 128922363 -19861109 - L3 LINE CR1 -333 1244 1130 2336 115 0 0 chr11 128922429 128922733 -19860739 - AluSq SINE Alu -8 305 2 260 310 10 30 chr11 128924547 128924647 -19858825 + MIR SINE MIR 114 211 -51 4058 74 17 0 chr11 128925406 128925949 -19857523 - MER41A LTR ERV1 0 554 3 284 294 7 75 chr11 128926161 128926335 -19857137 + MIR SINE MIR 18 181 -63 579 279 32 23 chr11 128927046 128927265 -19856207 - L2 LINE L2 -6 3307 3087 235 238 0 16 chr11 128927654 128927717 -19855755 - MLT1J2 LTR MaLR -42 408 347 459 289 53 27 chr11 128927750 128927975 -19855497 - MLT1J2 LTR MaLR -183 267 37 626 139 122 0 chr11 128928079 128928194 -19855278 + AluJb SINE Alu 6 134 -178 14645 31 3 0 chr11 128928238 128930063 -19853409 - L1PA3 LINE L1 -972 5174 3345 7505 23 0 0 chr11 128930063 128931064 -19852408 + L1PA3 LINE L1 5155 6155 0 1011 199 19 10 chr11 128931097 128931342 -19852130 + AluJb SINE Alu 105 351 0 272 299 107 75 chr11 128931415 128931602 -19851870 + MIR SINE MIR 60 252 -10 459 231 46 52 chr11 128932008 128932181 -19851291 - L2 LINE L2 -23 3290 3119 1036 205 4 15 chr11 128932192 128932455 -19851017 + L1MA4 LINE L1 6030 6289 -11 2328 104 10 3 chr11 128932575 128932883 -19850589 + AluSx SINE Alu 1 310 -2 529 86 19 29 chr11 128932893 128932998 -19850474 + (GGAA)n Simple_repeat Simple_repeat 2 105 0 393 233 37 0 chr11 128932999 128933160 -19850312 - L2 LINE L2 -236 3036 2868 272 250 42 33 chr11 128933438 128933558 -19849914 - Tigger1 DNA MER2_type -1326 1092 972 191 290 65 0 chr11 128934681 128934743 -19848729 - MIR SINE MIR -77 185 120 1125 139 35 0 chr11 128934743 128934915 -19848557 + AluSg/x SINE Alu 133 310 0 261 83 0 0 chr11 128934944 128934980 -19848492 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 335 365 22 70 chr11 128935692 128936043 -19847429 - L2 LINE L2 -2 3270 2939 207 0 0 0 chr11 128936043 128936066 -19847406 + (GGAGA)n Simple_repeat Simple_repeat 3 25 0 335 365 22 70 chr11 128936066 128936117 -19847355 - L2 LINE L2 -333 2939 2887 331 305 152 7 chr11 128936229 128936380 -19847092 - MIR3 SINE MIR -15 193 21 237 351 13 0 chr11 128937058 128937135 -19846337 + MIR SINE MIR 18 95 -113 357 266 21 0 chr11 128937335 128937429 -19846043 + MIR SINE MIR 161 256 -6 2179 207 86 35 chr11 128937938 128938483 -19844989 - LTR39 LTR ERV1 0 783 211 221 120 40 0 chr11 128938487 128938537 -19844935 + CT-rich Low_complexity Low_complexity 1 52 0 1742 208 42 39 chr11 128938628 128939036 -19844436 + LTR2 LTR ERV1 41 449 0 833 136 0 0 chr11 128939038 128939156 -19844316 - AluJb SINE Alu -194 118 1 1207 103 75 19 chr11 128939157 128939370 -19844102 - LTR39 LTR ERV1 -558 225 1 1051 152 10 44 chr11 128939607 128939811 -19843661 - MER20 DNA MER1_type -19 200 4 649 293 67 5 chr11 128941432 128941640 -19841832 - MIR SINE MIR -15 247 27 215 133 22 0 chr11 128941653 128941698 -19841774 + CT-rich Low_complexity Low_complexity 2 47 0 342 310 75 36 chr11 128941949 128942281 -19841191 + L2 LINE L2 2831 3175 -97 212 303 80 57 chr11 128942292 128942467 -19841005 - L2 LINE L2 -10 3303 3125 339 289 157 24 chr11 128942714 128942880 -19840592 - MLT1J LTR MaLR 0 511 324 2268 114 13 0 chr11 128942963 128943270 -19840202 + AluSx SINE Alu 1 311 -1 4933 147 28 29 chr11 128943311 128944510 -19838962 - L1MB3 LINE L1 -1 6182 4988 212 333 40 0 chr11 128944858 128944957 -19838515 + MIR SINE MIR 51 153 -109 465 242 28 67 chr11 128944999 128945177 -19838295 - MIR SINE MIR -57 205 35 206 267 0 27 chr11 128945550 128945625 -19837847 + C-rich Low_complexity Low_complexity 5 77 0 325 232 92 83 chr11 128946122 128946294 -19837178 + MIR SINE MIR 4 175 -62 617 279 77 14 chr11 128947254 128947462 -19836010 + MIR SINE MIR 28 248 -14 538 268 101 0 chr11 128947998 128948166 -19835306 - MIR SINE MIR -1 261 77 208 316 51 0 chr11 128948248 128948327 -19835145 - L2 LINE L2 0 3313 3231 365 283 9 18 chr11 128949308 128949421 -19834051 + MIR SINE MIR 77 188 -74 286 288 144 9 chr11 128949811 128949922 -19833550 - L2 LINE L2 -527 2787 2662 226 228 18 18 chr11 128950557 128950614 -19832858 + CT-rich Low_complexity Low_complexity 1 57 0 306 242 0 0 chr11 128951212 128951274 -19832198 - L2 LINE L2 0 3272 3211 286 366 49 0 chr11 128951297 128951420 -19832052 - MIR3 SINE MIR -78 130 2 1711 151 78 30 chr11 128952166 128952378 -19831094 - MLT1B LTR MaLR 0 390 190 243 0 0 0 chr11 128952378 128952405 -19831067 + (TG)n Simple_repeat Simple_repeat 2 28 0 2130 116 11 0 chr11 128952405 128952690 -19830782 - AluSg SINE Alu -22 288 1 1711 151 78 30 chr11 128952690 128952848 -19830624 - MLT1B LTR MaLR -199 191 1 180 305 17 0 chr11 128952881 128952940 -19830532 - MIR3 SINE MIR -140 68 9 267 293 49 0 chr11 128953941 128954023 -19829449 - MIR SINE MIR -110 152 67 428 297 59 15 chr11 128954730 128954964 -19828508 + MIR SINE MIR 1 250 -12 1871 126 54 0 chr11 128955278 128955621 -19827851 - AluSx SINE Alu 0 312 1 517 289 83 15 chr11 128956333 128956537 -19826935 - L2 LINE L2 -181 3132 2915 467 338 0 12 chr11 128956633 128956793 -19826679 - L3 LINE CR1 -13 1564 1407 1656 72 0 17 chr11 128956795 128957031 -19826441 - L1PA6 LINE L1 0 6154 5923 464 165 10 10 chr11 128957077 128957180 -19826292 - L1MB2 LINE L1 -4 6167 6065 1813 132 69 0 chr11 128957211 128957500 -19825972 - MER1B DNA MER1_type -30 309 1 2548 139 20 13 chr11 128957500 128957947 -19825525 - L1MB2 LINE L1 -149 6022 5573 238 261 31 0 chr11 128958401 128958466 -19825006 - L2 LINE L2 -6 3307 3241 1844 110 34 12 chr11 128958862 128959188 -19824284 - L1MB4 LINE L1 0 6180 5848 272 304 167 0 chr11 128959193 128959295 -19824177 - MIR SINE MIR -71 137 19 394 215 50 41 chr11 128959411 128959532 -19823940 - MIR3 SINE MIR -22 186 65 468 333 39 6 chr11 128960059 128960239 -19823233 + MIR SINE MIR 7 192 -70 582 285 0 24 chr11 128961586 128961751 -19821721 + MIR3 SINE MIR 19 179 -29 342 305 48 0 chr11 128963362 128963467 -19820005 + MER69 DNA AcHobo 84 193 -1033 871 261 5 5 chr11 128963555 128963754 -19819718 + MER69 DNA AcHobo 360 558 -1968 21 0 0 0 chr11 128963773 128963794 -19819678 + AT_rich Low_complexity Low_complexity 1 21 0 793 146 51 146 chr11 128963794 128964068 -19819404 + MER69 DNA AcHobo 2277 2524 -2 653 315 153 41 chr11 128964663 128965074 -19818398 - L3 LINE CR1 -5 1572 1080 1775 151 34 14 chr11 128965074 128965365 -19818107 + AluJb SINE Alu 3 299 -13 653 315 153 41 chr11 128965365 128965515 -19817957 - L3 LINE CR1 -497 1080 948 297 236 0 110 chr11 128965898 128966025 -19817447 + MER103 DNA DNA 4 116 -50 282 167 0 0 chr11 128966208 128966256 -19817216 - L2 LINE L2 -88 3225 3178 247 272 218 7 chr11 128966290 128966437 -19817035 - MIR3 SINE MIR -7 201 24 198 290 246 0 chr11 128966486 128966555 -19816917 + L2 LINE L2 3182 3267 -5 603 243 75 17 chr11 128966943 128967116 -19816356 - MIR SINE MIR 0 262 80 668 259 40 43 chr11 128967201 128967452 -19816020 - L1MC5 LINE L1 -15 8027 7704 1874 115 0 0 chr11 128968279 128968540 -19814932 - AluSg SINE Alu -49 261 1 352 244 22 11 chr11 128968588 128968678 -19814794 - MIR SINE MIR -109 153 63 233 228 18 0 chr11 128969124 128969181 -19814291 + L2 LINE L2 3256 3313 0 412 290 68 40 chr11 128969287 128969463 -19814009 - MIR SINE MIR -56 206 26 635 187 0 11 chr11 128970242 128970424 -19813048 + (CA)n Simple_repeat Simple_repeat 1 180 0 282 205 0 0 chr11 128970454 128970532 -19812940 + (CA)n Simple_repeat Simple_repeat 1 78 0 740 47 85 0 chr11 128970534 128970640 -19812832 + HERVH LTR ERV1 203 317 -7396 15946 98 33 7 chr11 128970693 128973090 -19810382 + HERVH LTR ERV1 528 2987 -4726 889 135 20 0 chr11 128973084 128973232 -19810240 + HERVH LTR ERV1 3140 3290 -4423 * 898 162 0 7 chr11 128973222 128973370 -19810102 + HERVH LTR ERV1 3492 3638 -4075 * 1188 152 0 1 chr11 128973360 128973721 -19809751 + HERVH LTR ERV1 4744 5149 -2564 1328 139 19 0 chr11 128973722 128973938 -19809534 + HERVH LTR ERV1 5600 5819 -1894 * 2440 76 45 13 chr11 128973936 128974316 -19809156 + HERVH LTR ERV1 7322 7713 0 2717 101 48 16 chr11 128974316 128974750 -19808722 + LTR7 LTR ERV1 1 448 -2 183 271 0 21 chr11 128974765 128974813 -19808659 - MIR SINE MIR -135 73 27 247 316 43 8 chr11 128974986 128975103 -19808369 - L2 LINE L2 -7 3265 3145 255 312 46 9 chr11 128975745 128975854 -19807618 - MIR3 SINE MIR -87 121 9 182 330 138 0 chr11 128977819 128977913 -19805559 + MER5B DNA MER1_type 3 109 -69 200 288 41 27 chr11 128978621 128978694 -19804778 - MER5B DNA MER1_type -70 108 35 487 314 21 16 chr11 128979307 128979495 -19803977 + MIR3 SINE MIR 17 205 -3 1793 139 10 24 chr11 128981461 128981782 -19801690 - AluJo SINE Alu 0 317 1 368 350 63 0 chr11 128983733 128983876 -19799596 - MIR SINE MIR -67 195 44 376 196 28 47 chr11 128985972 128986079 -19797393 - MIR SINE MIR -63 145 41 763 243 43 0 chr11 128986351 128986536 -19796936 + MIR SINE MIR 47 239 -23 228 233 93 23 chr11 128986924 128987010 -19796462 - MIR SINE MIR -77 131 40 678 85 0 0 chr11 128987174 128987268 -19796204 + (TCTA)n Simple_repeat Simple_repeat 4 97 0 718 86 17 0 chr11 128987476 128987592 -19795880 + (TAGA)n Simple_repeat Simple_repeat 2 119 0 271 310 30 0 chr11 128989544 128989644 -19793828 - MIR SINE MIR -49 213 111 306 298 111 12 chr11 128989980 128990151 -19793321 + MIR SINE MIR 31 218 -44 249 83 0 0 chr11 128990190 128990226 -19793246 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 960 127 0 0 chr11 128990226 128990368 -19793104 - AluSg/x SINE Alu -37 273 132 1946 110 15 0 chr11 128990368 128990641 -19792831 - AluSx SINE Alu -25 287 11 260 221 44 0 chr11 128990731 128990799 -19792673 + MIR SINE MIR 74 144 -118 488 264 71 0 chr11 128990896 128991051 -19792421 - MIR SINE MIR -51 211 46 204 353 17 50 chr11 128991136 128991255 -19792217 - MIR SINE MIR -54 208 94 204 348 155 17 chr11 128991820 128992001 -19791471 - L3b LINE CR1 -88 1495 1290 2224 90 17 0 chr11 128992090 128992390 -19791082 - AluSc SINE Alu -4 305 1 235 306 28 0 chr11 128992397 128992469 -19791003 - MIR SINE MIR -108 100 27 289 353 8 17 chr11 128992983 128993102 -19790370 - MIR SINE MIR -61 147 30 1791 49 0 9 chr11 128993487 128993712 -19789760 + L1PA5 LINE L1 5932 6154 0 489 311 25 31 chr11 128993882 128993925 -19789547 - MIR3 SINE MIR -10 198 156 752 157 0 0 chr11 128993925 128994068 -19789404 + FLAM_A SINE Alu 1 143 0 489 311 25 31 chr11 128994068 128994219 -19789253 - MIR3 SINE MIR -52 156 4 393 252 42 8 chr11 128994820 128994939 -19788533 + MIR3 SINE MIR 33 155 -53 306 73 0 0 chr11 128995247 128995288 -19788184 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 285 322 34 25 chr11 128996554 128996672 -19786800 - MIR3 SINE MIR -5 203 85 448 218 54 68 chr11 128996751 128996826 -19786646 - MIR SINE MIR -29 233 159 2155 152 75 5 chr11 128996826 128997201 -19786271 + MER57A LTR ERV1 1 401 -2 448 218 54 68 chr11 128997201 128997272 -19786200 - MIR SINE MIR -103 159 89 403 341 72 55 chr11 128998353 128998714 -19784758 + L3b LINE CR1 1135 1501 -82 363 284 11 21 chr11 129000120 129000249 -19783223 - MIR3 SINE MIR -15 193 67 300 162 221 0 chr11 129000306 129000374 -19783098 - L2 LINE L2 -5 3308 3226 335 252 46 30 chr11 129000494 129000625 -19782847 + MIR SINE MIR 35 167 -95 303 241 24 2 chr11 129001440 129001540 -19781932 + MIR SINE MIR 55 156 -52 337 243 18 63 chr11 129001775 129001886 -19781586 - MIR SINE MIR -87 121 16 231 88 0 0 chr11 129002683 129002717 -19780755 + (TC)n Simple_repeat Simple_repeat 2 35 0 423 223 0 0 chr11 129003098 129003210 -19780262 + (TG)n Simple_repeat Simple_repeat 2 113 0 251 132 0 38 chr11 129003210 129003263 -19780209 + MER4-int LTR ERV1 1111 1161 -5437 1352 162 85 4 chr11 129004636 129004793 -19778679 - AluJo SINE Alu -19 293 150 219 69 0 0 chr11 129004793 129004822 -19778650 + (ATTG)n Simple_repeat Simple_repeat 1 29 0 1352 162 85 4 chr11 129004822 129004935 -19778537 - AluJo SINE Alu -162 150 1 872 215 15 24 chr11 129005499 129005704 -19777768 + L1ME1 LINE L1 5916 6118 -48 715 158 53 7 chr11 129006131 129006283 -19777189 - MER96B DNA MER1_type? -236 181 23 186 246 79 79 chr11 129007531 129007645 -19775827 + L2 LINE L2 3154 3267 -5 338 61 20 0 chr11 129008265 129008314 -19775158 + (TGAA)n Simple_repeat Simple_repeat 3 52 0 745 279 53 13 chr11 129008492 129008718 -19774754 + MIR SINE MIR 21 255 -7 198 354 8 85 chr11 129008754 129008884 -19774588 + MIR3 SINE MIR 58 177 -31 191 382 26 0 chr11 129010644 129010720 -19772752 - L2 LINE L2 -1 3271 3194 280 314 163 7 chr11 129013567 129013720 -19769752 - MIR SINE MIR -66 196 20 2175 93 0 10 chr11 129013806 129014106 -19769366 + AluSq SINE Alu 1 297 -16 358 218 30 188 chr11 129015094 129015173 -19768299 - MIR SINE MIR -79 183 152 2000 124 7 3 chr11 129015173 129015472 -19768000 + AluSx SINE Alu 12 311 -1 358 218 30 188 chr11 129015472 129015589 -19767883 - MIR SINE MIR -110 152 18 304 250 181 17 chr11 129015914 129016030 -19767442 + MIR SINE MIR 94 228 -34 304 250 181 17 chr11 129016417 129016533 -19766939 + MIR SINE MIR 94 228 -34 253 280 56 56 chr11 129016627 129016734 -19766738 + Charlie8 DNA MER1_type 1 107 -2310 360 281 50 83 chr11 129017003 129017281 -19766191 - L3 LINE CR1 -159 1418 1150 561 316 52 5 chr11 129017756 129017968 -19765504 + MIR SINE MIR 13 234 -28 361 0 20 20 chr11 129017984 129018034 -19765438 + (CA)n Simple_repeat Simple_repeat 2 51 0 349 222 28 0 chr11 129018146 129018218 -19765254 + L2 LINE L2 3225 3298 -15 705 181 9 0 chr11 129019312 129019428 -19764044 - FLAM_A SINE Alu -16 117 1 1190 171 84 4 chr11 129019429 129019680 -19763792 + MER90 LTR ERV1 344 614 0 236 255 0 0 chr11 129019803 129019850 -19763622 + (CA)n Simple_repeat Simple_repeat 2 48 0 3591 208 42 16 chr11 129020503 129021751 -19761721 - L1ME LINE L1 -475 5691 4410 2387 168 28 37 chr11 129021751 129022316 -19761156 - Charlie1 DNA MER1_type -176 2585 2026 5475 182 19 2 chr11 129022316 129023941 -19759531 + L1P4 LINE L1 4126 5777 -389 639 280 209 13 chr11 129024856 129024932 -19758540 + L2 LINE L2 2722 2782 -531 2077 99 20 24 chr11 129024932 129025226 -19758246 - AluSq SINE Alu -20 293 1 639 280 209 13 chr11 129025226 129025654 -19757818 + L2 LINE L2 2782 3313 0 354 254 136 0 chr11 129026279 129026397 -19757075 + MIR SINE MIR 81 214 -48 288 267 86 48 chr11 129028121 129028226 -19755246 - MIR SINE MIR -90 172 64 210 179 84 110 chr11 129028247 129028375 -19755097 - MIR SINE MIR -62 146 22 182 235 137 0 chr11 129029374 129029425 -19754047 + MIR SINE MIR 191 248 -14 228 290 35 2 chr11 129029660 129029747 -19753725 + MIR SINE MIR 25 113 -95 2281 121 0 0 chr11 129030866 129031171 -19752301 + AluSq SINE Alu 1 305 -8 1649 156 93 0 chr11 129031376 129031646 -19751826 - AluJb SINE Alu -17 295 1 274 310 18 9 chr11 129031827 129031940 -19751532 + GA-rich Low_complexity Low_complexity 1 114 0 267 54 0 0 chr11 129033152 129033189 -19750283 + (CA)n Simple_repeat Simple_repeat 2 38 0 496 259 209 5 chr11 129035046 129035247 -19748225 + MIR SINE MIR 8 249 -13 345 241 0 60 chr11 129036367 129036450 -19747022 - MER91B DNA MER1_type -111 79 2 259 260 0 0 chr11 129036737 129036787 -19746685 - L2 LINE L2 -20 3252 3203 249 310 66 26 chr11 129037392 129037555 -19745917 - MIR SINE MIR -59 203 33 2229 108 0 3 chr11 129038060 129038348 -19745124 - AluSx SINE Alu -17 295 9 192 296 190 35 chr11 129038375 129038517 -19744955 - MIR SINE MIR -51 211 48 2054 114 17 7 chr11 129039602 129039913 -19743559 - AluSx SINE Alu 0 312 1 895 166 0 6 chr11 129039956 129040113 -19743359 + L1MB1 LINE L1 6008 6163 -5 1740 212 20 1 chr11 129040120 129040507 -19742965 - L1MB7 LINE L1 -25 6159 5766 502 332 31 20 chr11 129040552 129040844 -19742628 - L1ME3A LINE L1 -219 5934 5640 390 203 112 14 chr11 129040864 129041007 -19742465 + MER112 DNA MER1_type 17 173 -87 2706 280 121 49 chr11 129041075 129042484 -19740988 - L1ME3A LINE L1 -528 5625 4319 6186 30 7 4 chr11 129042484 129043223 -19740249 - L1PA4 LINE L1 0 6155 5415 2706 280 121 49 chr11 129043223 129044621 -19738851 - L1ME3A LINE L1 -1834 4319 2633 3912 126 6 47 chr11 129044793 129045438 -19738034 + LTR31 LTR ERV1 1 619 0 230 298 35 47 chr11 129045539 129045710 -19737762 - L1ME3A LINE L1 -3868 2261 2093 799 174 0 0 chr11 129045783 129045915 -19737557 - FLAM_C SINE Alu 0 133 2 1629 224 147 60 chr11 129046234 129046730 -19736742 + MLT1F LTR MaLR 1 539 -3 1463 291 55 40 chr11 129046786 129046894 -19736578 - L1MEd LINE L1 -4651 1659 1554 2212 265 17 35 chr11 129046894 129047498 -19735974 + MLT1E LTR MaLR 1 593 0 1463 291 55 40 chr11 129047498 129048503 -19734969 - L1MEd LINE L1 -4756 1554 498 1920 141 22 4 chr11 129048616 129048916 -19734556 - AluSx SINE Alu 0 305 1 186 189 0 0 chr11 129049164 129049201 -19734271 + CT-rich Low_complexity Low_complexity 2 38 0 182 274 36 48 chr11 129049591 129049675 -19733797 - L2 LINE L2 -4 3268 3186 349 263 140 40 chr11 129049760 129049988 -19733484 - L2 LINE L2 -131 3141 2891 182 269 0 60 chr11 129051030 129051097 -19732375 + MIR SINE MIR 121 183 -79 256 306 157 27 chr11 129051880 129052027 -19731445 - MIR3 SINE MIR -6 202 37 256 306 157 27 chr11 129052654 129052801 -19730671 - MIR3 SINE MIR -6 202 37 2427 78 3 3 chr11 129053315 129053611 -19729861 - AluSc SINE Alu -13 296 1 2164 101 10 7 chr11 129054529 129054980 -19728492 - AluSx SINE Alu 0 452 1 290 141 31 47 chr11 129055440 129055504 -19727968 - MIR SINE MIR -35 227 165 862 290 31 26 chr11 129056663 129056932 -19726540 - MIR SINE MIR -1 261 2 349 314 58 0 chr11 129056932 129057045 -19726427 + MIR SINE MIR 73 192 -70 284 0 28 0 chr11 129058849 129058885 -19724587 + (ATG)n Simple_repeat Simple_repeat 1 37 0 319 295 73 16 chr11 129058929 129059125 -19724347 - MIR SINE MIR -57 205 2 5867 183 40 20 chr11 129059172 129060498 -19722974 + L1MB3 LINE L1 3804 5188 -995 2193 110 0 0 chr11 129060498 129060788 -19722684 - AluSg SINE Alu -20 290 1 5867 183 40 20 chr11 129060788 129061475 -19721997 + L1MB3 LINE L1 5188 5860 -323 2225 102 17 3 chr11 129061547 129061840 -19721632 + AluSx SINE Alu 1 297 -15 1973 135 24 12 chr11 129061889 129062230 -19721242 + L1MB3 LINE L1 5839 6183 0 403 258 10 0 chr11 129063099 129063196 -19720276 - L2 LINE L2 -10 3303 3206 204 341 110 42 chr11 129063326 129063681 -19719791 + L2 LINE L2 2597 2975 -339 347 211 5 206 chr11 129063697 129063906 -19719566 - MER5B DNA MER1_type -5 173 7 2355 176 45 14 chr11 129064221 129064731 -19718741 + L1MC3 LINE L1 7260 7785 0 228 67 0 0 chr11 129065566 129065596 -19717876 + (GAA)n Simple_repeat Simple_repeat 3 32 0 219 271 187 28 chr11 129066740 129066847 -19716625 + L2 LINE L2 3144 3267 -5 283 318 246 0 chr11 129067604 129067730 -19715742 - MIR SINE MIR -6 256 100 217 269 43 32 chr11 129069201 129069294 -19714178 - MIR3 SINE MIR -2 206 113 198 228 127 25 chr11 129069983 129070062 -19713410 + MIR3 SINE MIR 114 200 -8 243 304 152 0 chr11 129070062 129070154 -19713318 + L2 LINE L2 3167 3272 0 180 174 29 14 chr11 129071086 129071155 -19712317 + (TG)n Simple_repeat Simple_repeat 2 71 0 182 225 50 0 chr11 129073088 129073128 -19710344 + MIR SINE MIR 221 262 0 406 198 44 0 chr11 129073382 129073473 -19709999 + MIR3 SINE MIR 113 207 -1 223 224 86 121 chr11 129074507 129074681 -19708791 - L2 LINE L2 -272 3041 2874 545 258 126 80 chr11 129077048 129077533 -19705939 + MLT1J LTR MaLR 2 508 -3 199 237 34 34 chr11 129079569 129079628 -19703844 + MER5B DNA MER1_type 3 61 -117 699 286 61 47 chr11 129079637 129079875 -19703597 + MLT1H LTR MaLR 14 247 -302 1775 138 3 7 chr11 129079875 129080158 -19703314 + AluSx SINE Alu 1 282 -30 234 0 0 0 chr11 129080165 129080191 -19703281 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 699 286 61 47 chr11 129080191 129080287 -19703185 + MLT1H LTR MaLR 252 361 -188 305 268 39 31 chr11 129080297 129080424 -19703048 + MLT1H LTR MaLR 493 620 -4 227 239 119 15 chr11 129080437 129080504 -19702968 + MER5A DNA MER1_type 78 151 -38 501 260 123 13 chr11 129080752 129080906 -19702566 - MIR3 SINE MIR -8 200 30 325 321 12 43 chr11 129081585 129081747 -19701725 + L3b LINE CR1 1247 1403 -180 614 272 57 19 chr11 129081855 129082083 -19701389 + MIR SINE MIR 3 236 -26 202 266 177 9 chr11 129082381 129082494 -19700978 - MIR SINE MIR -2 260 129 943 262 40 0 chr11 129082795 129083020 -19700452 - MIR SINE MIR -6 256 23 383 196 30 18 chr11 129083694 129083798 -19699674 - MER5A DNA MER1_type 0 189 74 407 277 9 9 chr11 129084123 129084235 -19699237 + L2 LINE L2 2948 3059 -213 277 209 104 134 chr11 129084628 129084829 -19698643 + L1ME4a LINE L1 5625 5819 -302 763 170 0 57 chr11 129084867 129085008 -19698464 - FLAM_C SINE Alu 0 133 1 811 242 0 0 chr11 129085008 129085161 -19698311 + Tigger7 DNA MER2_type 19 171 -534 1218 105 10 10 chr11 129085165 129085365 -19698107 + Tigger7 DNA MER2_type 2209 2408 -79 239 267 0 13 chr11 129085365 129085440 -19698032 + (TA)n Simple_repeat Simple_repeat 1 74 0 284 70 23 0 chr11 129085453 129085496 -19697976 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 462 213 12 0 chr11 129085507 129085587 -19697885 + Tigger7 DNA MER2_type 2406 2486 -1 359 301 54 16 chr11 129085590 129085776 -19697696 + L1ME4a LINE L1 5834 6026 -95 193 247 32 65 chr11 129085794 129085887 -19697585 + MIR SINE MIR 150 239 -23 741 259 57 9 chr11 129085985 129086213 -19697259 - AluJo SINE Alu -60 252 14 3164 199 49 47 chr11 129086951 129087586 -19695886 + Charlie1a DNA MER1_type 2 642 -2119 2057 115 0 3 chr11 129087586 129087898 -19695574 + AluSx SINE Alu 1 311 0 3164 199 49 47 chr11 129087898 129087990 -19695482 + Charlie1a DNA MER1_type 642 732 -723 30 0 0 0 chr11 129088013 129088043 -19695429 + AT_rich Low_complexity Low_complexity 1 30 0 5733 169 17 2 chr11 129088048 129090050 -19693422 - L1PA16 LINE L1 -9 6157 4126 2497 161 35 44 chr11 129090050 129090615 -19692857 + Charlie1a DNA MER1_type 720 1279 -176 3766 205 42 16 chr11 129090615 129091863 -19691609 + L1ME LINE L1 4410 5691 -475 263 289 148 38 chr11 129092317 129092580 -19690892 - L2 LINE L2 -1094 2220 1929 531 260 148 31 chr11 129093039 129093262 -19690210 - MIR SINE MIR -9 253 5 743 321 49 4 chr11 129093976 129094219 -19689253 + MIR SINE MIR 9 262 0 379 271 172 16 chr11 129095139 129095261 -19688211 + MLT1J2 LTR MaLR 265 405 -45 200 254 42 28 chr11 129095960 129096031 -19687441 + L2 LINE L2 3242 3313 0 28 0 0 0 chr11 129097098 129097126 -19686346 + AT_rich Low_complexity Low_complexity 1 28 0 279 79 0 0 chr11 129097592 129097630 -19685842 + (CA)n Simple_repeat Simple_repeat 1 38 0 286 64 0 64 chr11 129098684 129098731 -19684741 + MER65A LTR ERV1 1 44 -401 949 191 6 11 chr11 129098762 129098945 -19684527 + MER65A LTR ERV1 40 221 -224 223 229 100 21 chr11 129099979 129100084 -19683388 - MIR SINE MIR -68 140 59 860 191 101 0 chr11 129100175 129100374 -19683098 + MER90 LTR ERV1 60 278 -297 1836 285 113 58 chr11 129100490 129101201 -19682271 - L1MEd LINE L1 -1273 4856 4186 6200 30 7 4 chr11 129101201 129101940 -19681532 - L1PA4 LINE L1 0 6155 5415 1836 285 113 58 chr11 129101940 129103336 -19680136 - L1MEd LINE L1 -1943 4186 2633 3417 156 6 45 chr11 129103515 129104155 -19679317 + LTR31 LTR ERV1 5 619 0 243 298 35 47 chr11 129104256 129104427 -19679045 - L1MEd LINE L1 -3868 2261 2093 780 174 0 0 chr11 129104500 129104632 -19678840 - FLAM_C SINE Alu 0 133 2 1567 220 147 60 chr11 129104951 129105447 -19678025 + MLT1F LTR MaLR 1 539 -3 1596 276 62 47 chr11 129105503 129105611 -19677861 - L1MEd LINE L1 -4651 1659 1554 2126 267 17 35 chr11 129105611 129106215 -19677257 + MLT1E LTR MaLR 1 593 0 1596 276 62 47 chr11 129106215 129107220 -19676252 - L1MEd LINE L1 -4756 1554 498 1782 141 22 4 chr11 129107333 129107633 -19675839 - AluSx SINE Alu 0 305 1 186 189 0 0 chr11 129107881 129107918 -19675554 + CT-rich Low_complexity Low_complexity 2 38 0 338 263 140 40 chr11 129108477 129108705 -19674767 - L2 LINE L2 -131 3141 2891 180 269 0 60 chr11 129109785 129109852 -19673620 + MIR SINE MIR 121 183 -79 251 306 157 27 chr11 129110635 129110782 -19672690 - MIR3 SINE MIR -6 202 37 748 141 8 8 chr11 129111401 129111522 -19671950 - L1 LINE L1 -1320 4826 4706 6011 180 13 1 chr11 129111524 129113448 -19670024 - L1PA13 LINE L1 -4 6159 4208 198 274 48 32 chr11 129113630 129113692 -19669780 - MER5A DNA MER1_type -4 185 123 510 248 103 7 chr11 129114185 129114355 -19669117 - MIR SINE MIR -44 218 25 228 301 82 0 chr11 129115402 129115475 -19667997 - L2 LINE L2 -36 3236 3158 251 303 0 46 chr11 129116017 129116126 -19667346 + MER94 DNA DNA 6 109 -25 308 229 102 34 chr11 129116166 129116284 -19667188 - MIR SINE MIR -11 251 126 675 288 42 78 chr11 129116590 129116948 -19666524 + MLT1K LTR MaLR 189 533 -55 2027 95 10 17 chr11 129117148 129117443 -19666029 + AluSc SINE Alu 3 295 -14 249 232 73 37 chr11 129117728 129117810 -19665662 - MIR SINE MIR -175 87 3 241 250 125 0 chr11 129119520 129119616 -19663856 - MIR SINE MIR -81 127 20 230 128 43 0 chr11 129119997 129120044 -19663428 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 463 195 0 0 chr11 129120199 129120276 -19663196 - MLT2B1 LTR ERVL -266 254 178 23 0 0 0 chr11 129120379 129120402 -19663070 + AT_rich Low_complexity Low_complexity 1 23 0 2015 122 4 0 chr11 129120406 129120685 -19662787 + AluY SINE Alu 6 285 -26 207 0 0 0 chr11 129120688 129120711 -19662761 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2424 229 36 61 chr11 129120733 129121535 -19661937 - L1M4 LINE L1 -1951 4195 3414 985 183 58 14 chr11 129121536 129121744 -19661728 - MSTD LTR MaLR 0 396 180 254 370 76 0 chr11 129121859 129121978 -19661494 - L2 LINE L2 -9 3263 3136 1024 168 34 24 chr11 129122095 129122304 -19661168 + MER20 DNA MER1_type 6 216 -3 4123 43 0 0 chr11 129122716 129123181 -19660291 - L1PA5 LINE L1 -8 6146 5682 187 238 12 62 chr11 129123251 129123331 -19660141 - MIR SINE MIR -73 135 60 359 164 30 0 chr11 129123676 129123743 -19659729 - L1 LINE L1 -875 5271 5203 21 36 0 0 chr11 129123941 129123969 -19659503 + AT_rich Low_complexity Low_complexity 1 28 0 880 295 204 18 chr11 129124726 129125173 -19658299 + L2 LINE L2 2136 2665 -649 372 360 33 0 chr11 129125278 129125431 -19658041 - L2 LINE L2 -595 2719 2562 216 67 0 0 chr11 129125694 129125724 -19657748 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 188 326 56 22 chr11 129126479 129126568 -19656904 - L2 LINE L2 -156 3116 3025 6373 142 52 8 chr11 129126796 129127826 -19655646 - Ricksha_c DNA DNA -721 1325 250 830 174 0 0 chr11 129127830 129127968 -19655504 - Ricksha_c DNA DNA -1905 141 4 1210 222 30 96 chr11 129128336 129128836 -19654636 + L1M4 LINE L1 4824 5290 -856 1213 266 36 116 chr11 129128844 129129566 -19653906 + L1M4b LINE L1 5 668 -6191 1495 165 53 20 chr11 129129566 129129869 -19653603 + L1M4b LINE L1 1122 1434 -5425 394 333 18 68 chr11 129130423 129130645 -19652827 + MIR SINE MIR 23 233 -29 272 231 55 44 chr11 129130859 129130950 -19652522 - MLT1K LTR MaLR -284 304 213 307 150 50 0 chr11 129131061 129131121 -19652351 - L1MA3 LINE L1 0 6305 6243 187 288 0 27 chr11 129131430 129131503 -19651969 - L3 LINE CR1 -584 993 923 1031 320 77 5 chr11 129131708 129132086 -19651386 - MLT1I LTR MaLR -4 405 1 530 342 48 4 chr11 129132094 129132325 -19651147 - L3 LINE CR1 -901 676 436 27 62 0 0 chr11 129132461 129132509 -19650963 + AT_rich Low_complexity Low_complexity 1 48 0 1350 213 7 39 chr11 129133204 129133514 -19649958 - AluJo SINE Alu -12 300 1 2774 130 18 8 chr11 129134221 129135334 -19648138 - L1P LINE L1 -4884 1262 11 1786 96 16 0 chr11 129135341 129135592 -19647880 - L1PA15-16 LINE L1 -4267 2582 2328 1378 198 19 64 chr11 129135726 129136039 -19647433 - MER47B DNA MER2_type -87 331 33 203 333 136 7 chr11 129136281 129136428 -19647044 + L2 LINE L2 2579 2744 -570 1395 239 48 44 chr11 129137114 129137387 -19646085 + L1MEc LINE L1 1587 1864 -4532 1720 219 33 0 chr11 129137387 129137716 -19645756 + MER58B DNA MER1_type 2 341 0 1395 239 48 44 chr11 129137716 129137924 -19645548 + L1MEc LINE L1 1864 2070 -4326 213 349 68 40 chr11 129138130 129138379 -19645093 - L2 LINE L2 -705 2609 2354 243 343 19 9 chr11 129138916 129139024 -19644448 + L2 LINE L2 2929 3037 -235 804 234 119 0 chr11 129139082 129139300 -19644172 + MIR SINE MIR 7 250 -12 207 0 0 0 chr11 129140441 129140464 -19643008 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 283 298 24 0 chr11 129140488 129140572 -19642900 - L3 LINE CR1 -312 1265 1180 21 36 0 0 chr11 129140685 129140713 -19642759 + AT_rich Low_complexity Low_complexity 1 28 0 240 143 0 0 chr11 129140738 129140780 -19642692 + (TA)n Simple_repeat Simple_repeat 1 42 0 713 242 63 31 chr11 129141438 129141835 -19641637 - L1MEc LINE L1 -3706 2509 2154 527 307 32 16 chr11 129142845 129143034 -19640438 - L2 LINE L2 -9 3304 3113 628 99 88 0 chr11 129143043 129143134 -19640338 + AluSg1 SINE Alu 2 100 -209 320 292 62 0 chr11 129144348 129144444 -19639028 - L2 LINE L2 -19 3294 3193 1551 193 39 95 chr11 129144603 129144684 -19638788 + MLT1B LTR MaLR 4 88 -302 1421 231 134 23 chr11 129144684 129145035 -19638437 - MSTD LTR MaLR -2 394 5 1551 193 39 95 chr11 129145035 129145363 -19638109 + MLT1B LTR MaLR 88 390 0 609 196 51 61 chr11 129145400 129145614 -19637858 + L1MC5 LINE L1 7258 7469 -492 5333 161 36 11 chr11 129145808 129146730 -19636742 + Tigger1 DNA MER2_type 1 945 -1473 318 276 12 22 chr11 129196737 129196828 -19586644 - MIR3 SINE MIR -51 157 67 783 274 70 37 chr11 129196885 129197184 -19586288 - L2 LINE L2 -5 3308 3000 196 237 79 79 chr11 129197952 129198066 -19585406 - L2 LINE L2 -5 3267 3154 722 158 53 7 chr11 129199314 129199466 -19584006 + MER96B DNA MER1_type? 23 181 -236 853 215 15 24 chr11 129199893 129200098 -19583374 - L1ME1 LINE L1 -48 6118 5916 1533 160 76 4 chr11 129200662 129200775 -19582697 + AluJo SINE Alu 1 104 -208 219 69 0 0 chr11 129200775 129200804 -19582668 + (CAAT)n Simple_repeat Simple_repeat 1 29 0 1533 160 76 4 chr11 129200804 129200983 -19582489 + AluJo SINE Alu 104 312 0 360 281 50 83 chr11 129201192 129201470 -19582002 - L3 LINE CR1 -159 1418 1150 561 316 52 5 chr11 129201945 129202157 -19581315 + MIR SINE MIR 13 234 -28 412 17 17 17 chr11 129202173 129202231 -19581241 + (CA)n Simple_repeat Simple_repeat 2 59 0 1999 125 45 0 chr11 129202291 129202455 -19581017 - AluJb SINE Alu -12 300 116 252 0 0 0 chr11 129202455 129202483 -19580989 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1999 125 45 0 chr11 129202483 129202605 -19580867 - AluJb SINE Alu -196 116 1 287 314 163 7 chr11 129204182 129204335 -19579137 - MIR SINE MIR -66 196 20 2295 91 0 10 chr11 129204421 129204719 -19578753 + AluSq SINE Alu 1 295 -18 395 207 30 192 chr11 129205711 129205790 -19577682 - MIR SINE MIR -79 183 153 2129 123 7 3 chr11 129205790 129206090 -19577382 + AluSx SINE Alu 12 312 0 395 207 30 192 chr11 129206090 129206208 -19577264 - MIR SINE MIR -109 153 18 304 250 181 17 chr11 129206533 129206649 -19576823 + MIR SINE MIR 94 228 -34 253 280 56 56 chr11 129206743 129206850 -19576622 + Charlie8 DNA MER1_type 1 107 -2310 191 196 0 78 chr11 129206974 129207025 -19576447 - L2 LINE L2 -2 3311 3265 477 332 86 5 chr11 129207229 129207449 -19576023 + MIR SINE MIR 15 252 -10 180 270 0 0 chr11 129207464 129207501 -19575971 - MIR3 SINE MIR -15 193 157 1713 198 11 20 chr11 129208365 129208719 -19574753 - L1MB8 LINE L1 -2 6176 5826 3379 133 62 18 chr11 129208719 129209327 -19574145 + MER39B LTR ERV1 11 645 -8 1317 151 19 35 chr11 129209334 129209592 -19573880 - L1MB8 LINE L1 -338 5840 5587 260 207 35 0 chr11 129209595 129209653 -19573819 - L2 LINE L2 -9 3263 3204 2061 221 79 52 chr11 129209777 129210547 -19572925 - L1MB8 LINE L1 -1509 4637 3847 445 265 254 11 chr11 129210599 129210788 -19572684 - L2 LINE L2 -668 2646 2412 455 301 78 36 chr11 129211441 129211607 -19571865 - MER5B DNA MER1_type 0 178 6 243 189 0 0 chr11 129211613 129211659 -19571813 - MIR3 SINE MIR -49 159 113 446 233 12 0 chr11 129211679 129211765 -19571707 + MER81 DNA DNA 1 87 -27 * 468 153 0 0 chr11 129211759 129211831 -19571641 + MER81 DNA DNA 43 114 0 343 310 100 25 chr11 129212197 129212397 -19571075 + L2 LINE L2 3099 3313 0 426 20 0 0 chr11 129212801 129212852 -19570620 + (CAT)n Simple_repeat Simple_repeat 3 53 0 197 234 43 21 chr11 129212856 129212903 -19570569 - L2 LINE L2 -20 3252 3205 314 114 0 0 chr11 129213011 129213055 -19570417 + Alu SINE Alu 2 45 -258 359 226 13 101 chr11 129214217 129214347 -19569125 - L2 LINE L2 -84 3229 3114 2325 113 6 0 chr11 129214347 129214658 -19568814 + AluSp SINE Alu 1 313 0 359 226 13 101 chr11 129214658 129214686 -19568786 - L2 LINE L2 -199 3114 3085 1587 137 105 0 chr11 129214699 129214947 -19568525 + AluJb SINE Alu 1 274 -38 34 0 0 0 chr11 129214963 129214997 -19568475 + AT_rich Low_complexity Low_complexity 1 34 0 470 176 55 0 chr11 129215025 129215116 -19568356 + L1MC3 LINE L1 7477 7572 -213 2044 105 0 78 chr11 129215116 129215449 -19568023 + AluSx SINE Alu 1 307 -5 211 316 63 0 chr11 129215458 129215553 -19567919 - L2 LINE L2 -222 3091 2991 716 231 179 9 chr11 129216049 129216261 -19567211 - MIR SINE MIR -1 261 14 2477 92 0 0 chr11 129216312 129216615 -19566857 + AluSg1 SINE Alu 1 303 -6 811 192 45 0 chr11 129216742 129216919 -19566553 + MER20 DNA MER1_type 34 218 -1 445 387 15 0 chr11 129218089 129218288 -19565184 + MIR SINE MIR 60 261 -1 225 284 45 11 chr11 129218479 129218567 -19564905 + MIR SINE MIR 34 124 -138 363 212 138 58 chr11 129218639 129218828 -19564644 - Charlie5 DNA MER1_type -49 2563 2360 1185 36 7 0 chr11 129218829 129218967 -19564505 - AluY SINE Alu -20 291 153 1080 191 102 0 chr11 129219207 129219443 -19564029 + MIR SINE MIR 3 262 0 534 308 50 22 chr11 129220077 129220259 -19563213 - MER5A DNA MER1_type -1 188 2 625 260 42 31 chr11 129220525 129220717 -19562755 + MIR SINE MIR 45 238 -24 266 312 72 8 chr11 129220730 129220855 -19562617 - L2 LINE L2 -1 3271 3139 1949 156 7 0 chr11 129221071 129221360 -19562112 + AluSx SINE Alu 1 291 -21 373 214 13 0 chr11 129221406 129221497 -19561975 + L1ME2 LINE L1 6066 6158 -6 625 288 92 18 chr11 129221510 129221739 -19561733 + MIR SINE MIR 4 249 -13 689 161 0 0 chr11 129221915 129222027 -19561445 + FLAM_A SINE Alu 23 134 -8 379 246 36 41 chr11 129222405 129222561 -19560911 + L1MEc LINE L1 1362 1518 -4878 2162 118 24 84 chr11 129222561 129222976 -19560496 + MLT1B LTR MaLR 1 390 0 379 246 36 41 chr11 129222976 129223039 -19560433 + L1MEc LINE L1 1518 1580 -4816 4781 136 9 13 chr11 129223039 129223915 -19559557 + L1MA2 LINE L1 4005 4877 -1269 1835 185 38 31 chr11 129223919 129224466 -19559006 - MLT2A2 LTR ERVL 0 554 1 6227 131 20 9 chr11 129224466 129225878 -19557594 + L1MA2 LINE L1 4877 6304 0 301 227 0 0 chr11 129225889 129225964 -19557508 + L1MEc LINE L1 1566 1640 -4756 * 5754 239 52 52 chr11 129225937 129227561 -19555911 + L1MEc LINE L1 10 1632 -4583 2279 41 0 0 chr11 129227561 129227828 -19555644 + AluY SINE Alu 42 308 -3 5754 239 52 52 chr11 129227828 129228432 -19555040 + L1MEc LINE L1 1632 2234 -3981 1870 159 0 19 chr11 129228432 129228746 -19554726 + AluSx SINE Alu 5 312 0 5754 239 52 52 chr11 129228746 129229592 -19553880 + L1MEc LINE L1 2234 3078 -3137 2395 93 0 3 chr11 129229592 129229894 -19553578 + AluSp SINE Alu 3 303 -10 5754 239 52 52 chr11 129229894 129230850 -19552622 + L1MEc LINE L1 3078 4007 -2208 2440 92 0 0 chr11 129230850 129231154 -19552318 - AluY SINE Alu -7 304 1 5754 239 52 52 chr11 129231154 129231251 -19552221 + L1MEc LINE L1 4007 4102 -2113 2151 61 12 91 chr11 129231254 129231584 -19551888 - AluSq SINE Alu -9 304 1 190 233 0 0 chr11 129282057 129282100 -19501372 + L3 LINE CR1 1191 1233 -344 222 272 62 37 chr11 129282518 129282599 -19500873 + MER5B DNA MER1_type 48 130 -48 255 241 76 89 chr11 129282706 129283021 -19500451 + L1MC5 LINE L1 7640 7950 -11 2383 100 0 3 chr11 129283154 129283463 -19500009 + AluSx SINE Alu 1 308 -4 4996 158 31 20 chr11 129283495 129283973 -19499499 - L1MA7 LINE L1 0 6291 5820 2197 116 0 10 chr11 129283973 129284274 -19499198 - AluSx SINE Alu -14 298 1 4996 158 31 20 chr11 129284274 129285291 -19498181 - L1MA7 LINE L1 -471 5820 4782 197 273 57 34 chr11 129285881 129285969 -19497503 - MIR SINE MIR -69 139 50 180 219 24 0 chr11 129286138 129286179 -19497293 + MIR3 SINE MIR 144 185 -23 457 214 137 48 chr11 129286473 129286641 -19496831 - MIR SINE MIR -33 229 47 538 259 35 21 chr11 129287230 129287373 -19496099 + MIR SINE MIR 49 193 -69 414 300 39 31 chr11 129287421 129287551 -19495921 - MIR SINE MIR -130 132 2 424 220 79 0 chr11 129288275 129288393 -19495079 - MIR SINE MIR -62 146 34 1793 103 33 4 chr11 129288879 129289122 -19494350 - AluSq SINE Alu -63 250 1 485 323 57 10 chr11 129289324 129289516 -19493956 + MIR SINE MIR 3 203 -59 * 998 230 88 0 chr11 129289512 129289738 -19493734 - MIR SINE MIR -11 251 6 1017 263 70 55 chr11 129289849 129290264 -19493208 - L2 LINE L2 -26 3287 2867 326 235 66 72 chr11 129290452 129290618 -19492854 - MER112 DNA MER1_type -88 172 8 286 309 43 0 chr11 129292859 129292953 -19490519 + MIR SINE MIR 49 146 -62 188 65 0 32 chr11 129293416 129293447 -19490025 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 507 276 107 45 chr11 129293454 129293697 -19489775 + MIR SINE MIR 2 259 -3 508 284 58 19 chr11 129293881 129294036 -19489436 + MIR SINE MIR 75 235 -27 402 322 57 31 chr11 129295904 129296131 -19487341 - L2 LINE L2 -1 3312 3080 1915 177 35 25 chr11 129296146 129296513 -19486959 - MLT1A2 LTR MaLR 0 374 4 1207 270 127 2 chr11 129297592 129298066 -19485406 + L2 LINE L2 2155 2687 -627 235 191 24 0 chr11 129298584 129298637 -19484835 + MIR SINE MIR 100 153 -109 303 236 57 81 chr11 129298706 129298829 -19484643 + L2 LINE L2 3194 3313 0 222 296 182 0 chr11 129299174 129299262 -19484210 - L2 LINE L2 0 3272 3169 252 86 0 0 chr11 129299282 129299317 -19484155 + (CA)n Simple_repeat Simple_repeat 2 36 0 181 182 68 0 chr11 129299499 129299543 -19483929 - L3b LINE CR1 -9 1574 1528 * 229 246 136 34 chr11 129299509 129299627 -19483845 - MIR3 SINE MIR -25 183 54 2256 113 0 0 chr11 129299640 129299933 -19483539 - AluSc SINE Alu -16 293 1 2156 128 16 0 chr11 129300103 129300409 -19483063 - AluSx SINE Alu -1 311 1 184 125 31 156 chr11 129301114 129301178 -19482294 + L2 LINE L2 3199 3254 -18 223 246 49 0 chr11 129301263 129301324 -19482148 - L2 LINE L2 -219 3053 2990 283 164 0 36 chr11 129301589 129301644 -19481828 + MIR SINE MIR 87 139 -69 268 264 0 0 chr11 129301905 129301958 -19481514 - L2 LINE L2 -20 3252 3200 22 0 0 0 chr11 129301962 129301984 -19481488 + AT_rich Low_complexity Low_complexity 1 22 0 383 331 45 0 chr11 129302011 129302144 -19481328 - MIR3 SINE MIR -20 188 50 292 346 19 26 chr11 129302211 129302367 -19481105 + MIR SINE MIR 58 212 -50 2224 130 0 0 chr11 129303649 129303950 -19479522 + AluSx SINE Alu 1 301 -11 346 62 0 62 chr11 129306537 129306601 -19476871 + (GGAA)n Simple_repeat Simple_repeat 3 62 0 570 29 0 0 chr11 129306624 129306692 -19476780 + (TGGA)n Simple_repeat Simple_repeat 3 70 0 294 254 161 17 chr11 129307246 129307364 -19476108 + MIR SINE MIR 117 251 -11 617 293 54 37 chr11 129308842 129309084 -19474388 + MIR SINE MIR 13 258 -4 1166 222 118 31 chr11 129309700 129309887 -19473585 - L2 LINE L2 -118 3195 3026 2796 101 0 8 chr11 129309887 129310265 -19473207 - THE1C LTR MaLR 0 375 1 1166 222 118 31 chr11 129310265 129310646 -19472826 - L2 LINE L2 -287 3026 2599 438 253 227 5 chr11 129310651 129310849 -19472623 - L2 LINE L2 -2559 755 514 32 26 0 0 chr11 129311083 129311122 -19472350 + AT_rich Low_complexity Low_complexity 1 39 0 1030 276 77 14 chr11 129311420 129311786 -19471686 + L1MEc LINE L1 37 425 -5971 690 289 146 49 chr11 129311783 129312213 -19471259 - L1M4 LINE L1 -934 5212 4825 * 1977 124 3 11 chr11 129312213 129312495 -19470977 + AluSx SINE Alu 1 280 -32 690 289 146 49 chr11 129312495 129312508 -19470964 - L1M4 LINE L1 -1321 4825 4815 192 40 0 0 chr11 129312508 129312533 -19470939 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 690 289 146 49 chr11 129312533 129313089 -19470383 - L1M4 LINE L1 -1331 4815 4115 532 241 29 17 chr11 129313092 129313266 -19470206 - L1MEc LINE L1 -3117 3098 2923 281 244 40 35 chr11 129313504 129313705 -19469767 - L1MEc LINE L1 -5204 1192 991 235 248 30 0 chr11 129313711 129313812 -19469660 - L1MEc LINE L1 -4268 2128 2025 2215 217 51 47 chr11 129313817 129314264 -19469208 + L1MEc LINE L1 2345 2798 -3417 2306 85 0 48 chr11 129314264 129314580 -19468892 - AluSc SINE Alu -8 301 1 2215 217 51 47 chr11 129314580 129314820 -19468652 + L1MEc LINE L1 2798 3035 -3180 1936 244 43 110 chr11 129314837 129315588 -19467884 + L1MEc LINE L1 321 1120 -5276 1682 45 0 0 chr11 129315588 129315786 -19467686 - L1PA3 LINE L1 -3 6152 5955 1936 244 43 110 chr11 129315786 129315982 -19467490 + L1MEc LINE L1 1120 1190 -5206 1899 126 68 7 chr11 129315982 129316275 -19467197 + AluSx SINE Alu 1 311 -1 1936 244 43 110 chr11 129316275 129316410 -19467062 + L1MEc LINE L1 1190 1332 -5064 294 29 0 0 chr11 129316687 129316722 -19466750 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2153 119 0 0 chr11 129316725 129317003 -19466469 - AluSx SINE Alu -34 278 1 5727 124 6 4 chr11 129317003 129318463 -19465009 - L1PA16 LINE L1 -11 6155 4713 914 126 0 49 chr11 129318915 129319058 -19464414 + FLAM_C SINE Alu 1 136 -7 189 0 0 0 chr11 129319247 129319268 -19464204 + (T)n Simple_repeat Simple_repeat 1 21 0 2936 3 0 0 chr11 129319420 129319728 -19463744 - AluYb8 SINE Alu -10 308 1 360 283 25 50 chr11 129319770 129319929 -19463543 - MIR SINE MIR -106 156 2 462 205 5 38 chr11 129321170 129321355 -19462117 + GA-rich Low_complexity Low_complexity 2 180 0 1274 143 36 0 chr11 129321582 129321778 -19461694 + AluSx SINE Alu 1 203 -109 1139 206 207 3 chr11 129321812 129322388 -19461084 + LTR50 LTR ERVL 1 786 -9 2291 119 0 0 chr11 129322442 129322736 -19460736 - AluSx SINE Alu -18 294 1 740 231 30 10 chr11 129322744 129322943 -19460529 + HAL1b LINE L1 401 603 -745 1487 254 266 14 chr11 129323445 129324030 -19459442 + L1MC4 LINE L1 6458 6894 -1148 189 0 0 0 chr11 129324030 129324051 -19459421 + (TTAA)n Simple_repeat Simple_repeat 4 24 0 1487 254 266 14 chr11 129324051 129324257 -19459215 + L1MC4 LINE L1 6894 7449 -593 1409 158 55 31 chr11 129324257 129324511 -19458961 + AluJb SINE Alu 1 260 -52 913 239 97 0 chr11 129324524 129324762 -19458710 + L1MC4 LINE L1 7583 7843 -199 2132 134 3 3 chr11 129325027 129325334 -19458138 + AluSx SINE Alu 1 307 -5 323 357 66 8 chr11 129326192 129326387 -19457085 + MIR SINE MIR 2 215 -47 2047 145 0 16 chr11 129326387 129326705 -19456767 + AluSq SINE Alu 1 313 0 323 357 66 8 chr11 129326705 129326753 -19456719 + MIR SINE MIR 215 259 -3 1783 126 74 4 chr11 129326844 129327113 -19456359 + AluJo SINE Alu 7 294 -18 1910 126 8 0 chr11 129327354 129327616 -19455856 - AluSx SINE Alu -15 297 34 523 278 63 16 chr11 129327744 129327935 -19455537 - L2 LINE L2 -8 3305 3106 198 0 0 0 chr11 129328279 129328301 -19455171 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 2194 91 4 0 chr11 129328309 129328584 -19454888 - AluSx SINE Alu -36 276 1 22 56 0 0 chr11 129328759 129328795 -19454677 + AT_rich Low_complexity Low_complexity 1 36 0 2512 57 25 0 chr11 129329183 129329501 -19453971 - LTR17 LTR ERV1 -454 326 1 4232 55 30 31 chr11 129329501 129330105 -19453367 - HERV17 LTR ERV1 0 8626 8024 459 293 33 105 chr11 129331231 129331718 -19451754 - L2 LINE L2 -189 3083 2623 2174 133 0 0 chr11 129331951 129332252 -19451220 + AluJb SINE Alu 1 301 -11 2108 131 20 0 chr11 129332292 129332589 -19450883 + AluSx SINE Alu 1 303 -9 1120 162 0 0 chr11 129332591 129332758 -19450714 + AluSg/x SINE Alu 136 302 -10 1005 294 46 19 chr11 129332763 129333369 -19450103 + L1MB7 LINE L1 1365 2137 -4426 227 296 71 25 chr11 129333454 129333694 -19449778 + L1MB7 LINE L1 2045 2295 -4268 * 6020 215 31 52 chr11 129333670 129334291 -19449181 + L1MB7 LINE L1 2705 3337 -3045 2321 113 0 0 chr11 129334291 129334592 -19448880 + AluSx SINE Alu 1 301 -11 6020 215 31 52 chr11 129334592 129335781 -19447691 + L1MB7 LINE L1 3337 4478 -1904 1788 176 23 39 chr11 129335841 129336061 -19447411 + L1MB7 LINE L1 5987 6198 -222 2315 96 23 0 chr11 129336061 129336363 -19447109 + AluY SINE Alu 1 309 -2 1788 176 23 39 chr11 129336363 129336574 -19446898 + L1MB7 LINE L1 6198 6411 -9 1768 114 110 11 chr11 129337056 129337328 -19446144 + AluSq SINE Alu 5 303 -10 336 48 0 0 chr11 129337859 129337901 -19445571 + (CA)n Simple_repeat Simple_repeat 2 43 0 318 176 59 0 chr11 129338057 129338125 -19445347 - MER116 DNA Mariner 0 80 9 290 311 52 44 chr11 129338456 129338591 -19444881 + MIR SINE MIR 114 249 -13 424 305 28 14 chr11 129339169 129339310 -19444162 + MER5B DNA MER1_type 27 169 -9 276 250 75 0 chr11 129339757 129339837 -19443635 + Charlie7 DNA MER1_type 290 375 -2237 1854 153 43 10 chr11 129340780 129341080 -19442392 + AluSx SINE Alu 1 310 -2 588 148 0 0 chr11 129341080 129341188 -19442284 + (GGAA)n Simple_repeat Simple_repeat 1 108 0 234 0 0 0 chr11 129341872 129341898 -19441574 + (T)n Simple_repeat Simple_repeat 1 26 0 2658 65 0 0 chr11 129342115 129342422 -19441050 - AluSx SINE Alu -5 307 1 394 182 117 26 chr11 129342422 129342576 -19440896 + Charlie7 DNA MER1_type 2436 2603 -9 224 333 72 30 chr11 129342827 129343004 -19440468 + MIR SINE MIR 20 197 -55 801 179 42 6 chr11 129345197 129345365 -19438107 + MER69A DNA AcHobo 1 174 -3 243 276 54 131 chr11 129345480 129345803 -19437669 + L2 LINE L2 2915 3261 -11 2020 108 0 7 chr11 129345803 129346081 -19437391 + AluSx SINE Alu 1 276 -36 351 0 0 0 chr11 129346087 129346126 -19437346 + (CA)n Simple_repeat Simple_repeat 2 40 0 243 276 54 131 chr11 129346126 129346183 -19437289 + L2 LINE L2 3266 3272 0 458 193 156 0 chr11 129346640 129346749 -19436723 + Ricksha DNA DNA 22 147 -1899 3790 148 30 61 chr11 129346752 129346937 -19436535 + Ricksha DNA DNA 2426 2615 -631 317 57 0 38 chr11 129346937 129346990 -19436482 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 3790 148 30 61 chr11 129346990 129347577 -19435895 + Ricksha DNA DNA 2615 3172 -74 2179 131 0 3 chr11 129347577 129347875 -19435597 - AluSx SINE Alu -15 297 1 3790 148 30 61 chr11 129347875 129347941 -19435531 + Ricksha DNA DNA 3172 3239 -7 252 330 137 56 chr11 129349031 129350698 -19432774 - L2 LINE L2 -699 2615 814 234 318 82 0 chr11 129354061 129354146 -19429326 + MIR SINE MIR 123 214 -48 2208 130 0 0 chr11 129354818 129355118 -19428354 + AluSx SINE Alu 1 300 -12 4393 81 0 0 chr11 129355532 129356086 -19427386 + MER41A LTR ERV1 1 554 0 3202 211 94 18 chr11 129356228 129357024 -19426448 + MER21B LTR ERV1 6 862 -1 796 191 0 0 chr11 129357222 129357353 -19426119 - FLAM_A SINE Alu -2 131 1 1735 157 22 41 chr11 129357394 129357712 -19425760 - AluJb SINE Alu 0 312 1 2715 118 57 6 chr11 129358152 129358666 -19424806 + MER51A LTR ERV1 1 634 0 385 337 163 22 chr11 129358851 129359263 -19424209 + L2 LINE L2 2300 2769 -545 317 162 101 61 chr11 129359265 129359364 -19424108 - Charlie7 DNA MER1_type -2 2610 2508 976 152 57 0 chr11 129359455 129359613 -19423859 + AluJb SINE Alu 134 300 -12 535 245 61 6 chr11 129359744 129359907 -19423565 - Charlie7 DNA MER1_type -2151 461 290 2154 135 0 13 chr11 129360007 129360319 -19423153 + 7SLRNA srpRNA srpRNA 2 309 -11 1532 98 15 5 chr11 129360321 129360524 -19422948 + AluSq SINE Alu 1 205 -108 485 171 38 0 chr11 129360524 129360629 -19422843 - MER69A DNA AcHobo -68 109 1 261 252 39 19 chr11 129360782 129360885 -19422587 - Charlie7 DNA MER1_type -2502 110 6 256 297 188 65 chr11 129361065 129361358 -19422114 + L2 LINE L2 2938 3266 -6 216 327 135 0 chr11 129362041 129362145 -19421327 + MIR SINE MIR 118 235 -27 225 290 200 0 chr11 129362316 129362416 -19421056 - L2 LINE L2 -6 3266 3147 592 172 69 14 chr11 129362454 129362599 -19420873 + MSTD LTR MaLR 1 153 -243 1864 111 4 0 chr11 129362631 129362875 -19420597 + AluSq SINE Alu 1 245 -68 203 290 65 65 chr11 129362877 129362970 -19420502 - MIR SINE MIR -168 94 2 2360 98 7 0 chr11 129363021 129363328 -19420144 - AluSq SINE Alu -4 309 1 464 258 38 50 chr11 129363778 129363937 -19419535 + MIR SINE MIR 103 259 -3 219 276 0 17 chr11 129364498 129364556 -19418916 - L3 LINE CR1 -3 1574 1518 358 276 186 26 chr11 129364627 129364783 -19418689 - MER5A DNA MER1_type 0 189 9 1982 130 7 3 chr11 129365040 129365333 -19418139 + AluSx SINE Alu 1 294 -18 238 273 15 0 chr11 129365385 129365451 -19418021 + GA-rich Low_complexity Low_complexity 3 69 0 286 303 63 35 chr11 129365542 129365684 -19417788 + L2 LINE L2 3165 3310 -3 2090 87 10 65 chr11 129365760 129366070 -19417402 - AluSx SINE Alu -19 293 1 664 232 57 23 chr11 129366073 129366250 -19417222 - MIR SINE MIR -65 197 15 281 143 0 0 chr11 129366250 129366299 -19417173 - MER69 DNA AcHobo -3 2523 2475 757 172 8 0 chr11 129366950 129367078 -19416394 - MER69 DNA AcHobo -2395 131 3 260 276 20 20 chr11 129367100 129367239 -19416233 + A-rich Low_complexity Low_complexity 1 139 0 1994 169 0 0 chr11 129367297 129367599 -19415873 + AluSx SINE Alu 1 302 -10 259 254 178 16 chr11 129368367 129368493 -19414979 + MIR SINE MIR 42 200 -62 393 290 72 51 chr11 129368576 129368714 -19414758 + MIR3 SINE MIR 42 182 -26 2105 110 23 19 chr11 129368818 129369128 -19414344 + AluSx SINE Alu 1 311 -1 1173 153 0 0 chr11 129369129 129369306 -19414166 + AluSg/x SINE Alu 132 308 -2 2393 112 0 3 chr11 129370561 129370873 -19412599 + AluSq SINE Alu 1 311 -2 198 71 0 0 chr11 129372117 129372145 -19411327 + (TTCCC)n Simple_repeat Simple_repeat 5 32 0 467 297 89 29 chr11 129372966 129373212 -19410260 - L2 LINE L2 -146 3126 2866 423 187 98 73 chr11 129373818 129373941 -19409531 + L2 LINE L2 3147 3272 0 306 0 0 0 chr11 129374578 129374612 -19408860 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 200 279 23 0 chr11 129374623 129374666 -19408806 - L2 LINE L2 -24 3248 3205 313 218 88 82 chr11 129375026 129375117 -19408355 - MIR SINE MIR -50 212 117 2231 106 0 0 chr11 129375117 129375428 -19408044 + AluSx SINE Alu 1 311 0 313 218 88 82 chr11 129375428 129375482 -19407990 - MIR SINE MIR -145 117 65 192 323 167 47 chr11 129376011 129376268 -19407204 - L3 LINE CR1 -167 1410 1123 22 56 0 0 chr11 129376441 129376477 -19406995 + AT_rich Low_complexity Low_complexity 1 36 0 248 301 55 0 chr11 129376478 129376551 -19406921 + L2 LINE L2 3193 3269 -44 1900 105 70 7 chr11 129376616 129376901 -19406571 + AluSx SINE Alu 1 303 -9 273 347 73 36 chr11 129376901 129377120 -19406352 - MIR SINE MIR -15 247 21 743 280 47 5 chr11 129377535 129377749 -19405723 - MIR SINE MIR -12 250 28 291 287 42 56 chr11 129377940 129378060 -19405412 - MIR SINE MIR -79 183 64 1849 89 0 4 chr11 129378060 129378295 -19405177 - AluSg/x SINE Alu -7 303 70 291 287 42 56 chr11 129378295 129378317 -19405155 - MIR SINE MIR -198 64 43 245 218 0 36 chr11 129378976 129379031 -19404441 + MIR SINE MIR 113 165 -97 272 295 143 10 chr11 129380286 129380454 -19403018 - MIR3 SINE MIR -64 198 5 192 250 200 0 chr11 129381073 129381133 -19402339 + MIR SINE MIR 121 192 -70 204 171 29 0 chr11 129381720 129381755 -19401717 + MIR SINE MIR 117 152 -56 328 265 15 45 chr11 129382637 129382692 -19400780 - L1ME3A LINE L1 -264 5906 5851 2186 93 17 0 chr11 129382692 129382982 -19400490 - AluSx SINE Alu -17 295 1 328 265 15 45 chr11 129382982 129383058 -19400414 - L1ME3A LINE L1 -319 5851 5779 429 298 18 0 chr11 129383115 129383229 -19400243 - L2 LINE L2 0 3313 3198 1780 163 3 7 chr11 129383335 129383618 -19399854 + AluJb SINE Alu 1 282 -30 381 22 0 0 chr11 129383641 129383687 -19399785 + (CA)n Simple_repeat Simple_repeat 1 46 0 190 354 0 0 chr11 129383761 129383826 -19399646 + L2 LINE L2 3206 3270 -2 206 298 0 0 chr11 129384471 129384518 -19398954 + L2 LINE L2 3255 3301 -12 209 368 23 11 chr11 129384794 129384881 -19398591 - L2 LINE L2 -1 3271 3184 24 32 0 0 chr11 129384886 129384917 -19398555 + AT_rich Low_complexity Low_complexity 1 31 0 5262 76 33 0 chr11 129385020 129385689 -19397783 - LTR8 LTR ERV1 0 691 1 514 278 17 40 chr11 129385746 129385922 -19397550 - MIR SINE MIR -68 194 23 2766 243 39 16 chr11 129386509 129387303 -19396169 - L1ME3 LINE L1 -22 6140 5329 392 319 35 0 chr11 129387959 129388072 -19395400 - L2 LINE L2 -2 3311 3195 204 315 24 31 chr11 129388624 129388751 -19394721 - L2 LINE L2 -554 2760 2635 1668 156 0 29 chr11 129389339 129389614 -19393858 + AluJb SINE Alu 1 267 -45 303 191 0 0 chr11 129389620 129389683 -19393789 + GA-rich Low_complexity Low_complexity 1 63 0 1361 22 0 27 chr11 129389684 129389869 -19393603 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 275 0 29 0 chr11 129389871 129389906 -19393566 + (GGAAA)n Simple_repeat Simple_repeat 3 38 0 1094 244 31 43 chr11 129389948 129390300 -19393172 - L2 LINE L2 0 3313 2966 348 333 26 65 chr11 129390505 129390609 -19392863 + L2 LINE L2 2588 2695 -619 2278 99 3 3 chr11 129390609 129390901 -19392571 - AluSx SINE Alu -14 298 7 348 333 26 65 chr11 129390901 129391027 -19392445 + L2 LINE L2 2695 2809 -505 239 224 69 0 chr11 129391333 129391391 -19392081 - L2 LINE L2 0 3313 3252 487 103 35 0 chr11 129392253 129392340 -19391132 + GA-rich Low_complexity Low_complexity 1 90 0 262 262 122 47 chr11 129392698 129392805 -19390667 + MIR3 SINE MIR 84 198 -10 465 254 42 14 chr11 129392888 129393057 -19390415 + MIR SINE MIR 29 207 -55 275 191 278 26 chr11 129393239 129393354 -19390118 - MIR3 SINE MIR -27 181 38 376 305 54 42 chr11 129393978 129394145 -19389327 + MIR SINE MIR 60 228 -34 1834 163 7 17 chr11 129394321 129394616 -19388856 - AluJo SINE Alu -20 292 1 1553 122 17 4 chr11 129394830 129395067 -19388405 - L1PA11 LINE L1 -2 6172 5933 467 281 20 101 chr11 129395151 129395263 -19388209 - MIR SINE MIR -78 184 93 2299 101 0 3 chr11 129395263 129395561 -19387911 + AluSx SINE Alu 1 297 -15 467 281 20 101 chr11 129395561 129395647 -19387825 - MIR SINE MIR -169 93 2 286 301 183 0 chr11 129395743 129395836 -19387636 - MIR SINE MIR -108 154 45 2156 127 10 0 chr11 129396211 129396519 -19386953 - AluSx SINE Alu -1 311 1 240 304 239 0 chr11 129396520 129396612 -19386860 + L2 LINE L2 3156 3269 -3 180 236 127 0 chr11 129396789 129396844 -19386628 - L2 LINE L2 -1 3271 3210 413 258 81 0 chr11 129397213 129397337 -19386135 + MER94 DNA DNA 1 134 0 243 133 33 17 chr11 129397684 129397744 -19385728 + CT-rich Low_complexity Low_complexity 4 64 0 357 278 118 7 chr11 129397745 129397889 -19385583 + MIR SINE MIR 20 179 -83 241 288 88 107 chr11 129398200 129398379 -19385093 - MIR SINE MIR -52 210 37 180 0 0 0 chr11 129398611 129398631 -19384841 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 553 193 9 0 chr11 129398641 129398750 -19384722 - MER117 DNA MER1_type -54 143 34 572 185 11 112 chr11 129399265 129399326 -19384146 - MIR3 SINE MIR -3 205 139 2319 98 10 0 chr11 129399326 129399621 -19383851 - AluSx SINE Alu -14 298 1 572 185 11 112 chr11 129399621 129399737 -19383735 - MIR3 SINE MIR -69 139 46 223 277 54 45 chr11 129399952 129400064 -19383408 - L2 LINE L2 -212 3060 2948 392 258 123 61 chr11 129402309 129402472 -19381000 + MIR3 SINE MIR 17 189 -19 180 0 0 0 chr11 129402722 129402742 -19380730 + (TGAA)n Simple_repeat Simple_repeat 3 22 0 309 282 34 26 chr11 129402959 129403076 -19380396 + L2 LINE L2 3155 3272 0 451 169 52 0 chr11 129403087 129403164 -19380308 - Charlie3 DNA MER1_type -8 2702 2622 * 1112 167 26 10 chr11 129403155 129403175 -19380297 - MER1B DNA MER1_type -160 219 201 1588 134 24 102 chr11 129403175 129403510 -19379962 - AluYb8 SINE Alu -9 309 1 1112 167 26 10 chr11 129403510 129403697 -19379775 - MER1B DNA MER1_type -178 201 34 192 77 0 0 chr11 129404350 129404376 -19379096 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 270 0 0 0 chr11 129405216 129405246 -19378226 + (T)n Simple_repeat Simple_repeat 1 30 0 2357 107 0 0 chr11 129405377 129405675 -19377797 - AluSx SINE Alu 0 312 15 207 293 27 0 chr11 129406482 129406557 -19376915 + MIR SINE MIR 61 137 -71 523 282 43 57 chr11 129406703 129406912 -19376560 - L3 LINE CR1 -13 1564 1359 526 211 109 7 chr11 129406975 129407122 -19376350 - MER103 DNA DNA -2 164 3 1980 224 48 37 chr11 129407233 129407795 -19375677 - MER74B LTR ERVL 0 622 55 2254 115 0 10 chr11 129408534 129408839 -19374633 + AluSx SINE Alu 1 302 -10 890 146 14 21 chr11 129409106 129409250 -19374222 - FLAM_C SINE Alu 0 143 1 593 238 24 24 chr11 129409499 129409663 -19373809 + L2 LINE L2 3129 3292 -21 336 195 41 114 chr11 129409664 129409712 -19373760 + MER103 DNA DNA 8 58 -108 2193 105 10 0 chr11 129409712 129410006 -19373466 - AluSx SINE Alu -15 297 1 336 195 41 114 chr11 129410006 129410080 -19373392 + MER103 DNA DNA 58 121 -45 319 356 115 29 chr11 129411980 129412140 -19371332 + L1MEd LINE L1 2 147 -5972 204 40 0 0 chr11 129412140 129412165 -19371307 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 319 356 115 29 chr11 129412165 129412316 -19371156 + L1MEd LINE L1 147 340 -5779 734 259 63 77 chr11 129412355 129412532 -19370940 + L1MEd LINE L1 622 800 -5329 752 271 79 8 chr11 129412532 129412772 -19370700 - MIR SINE MIR -1 261 5 734 259 63 77 chr11 129412772 129412844 -19370628 + L1MEd LINE L1 800 872 -5257 3648 150 91 0 chr11 129412844 129413485 -19369987 - L1MB3 LINE L1 -4 6179 5481 734 259 63 77 chr11 129413485 129414316 -19369156 + L1MEd LINE L1 872 1685 -4444 2078 112 0 0 chr11 129414330 129414637 -19368835 - AluSx SINE Alu 0 324 18 24 32 0 0 chr11 129414642 129414673 -19368799 + AT_rich Low_complexity Low_complexity 1 31 0 329 282 30 113 chr11 129414873 129415174 -19368298 + L1MEd LINE L1 1865 2140 -4170 449 289 36 32 chr11 129415179 129415487 -19367985 + L1MEd LINE L1 2115 2423 -3706 295 247 146 46 chr11 129415524 129415763 -19367709 + L1MC5 LINE L1 6959 7221 -740 2143 147 25 17 chr11 129415764 129416125 -19367347 + MLT1A1 LTR MaLR 1 364 -1 522 239 130 79 chr11 129416340 129416522 -19366950 + L1MC5 LINE L1 7323 7494 -467 2333 67 0 24 chr11 129416522 129416819 -19366653 - AluY SINE Alu -21 290 1 522 239 130 79 chr11 129416819 129417100 -19366372 + L1MC5 LINE L1 7494 7823 -138 2274 99 0 16 chr11 129417100 129417442 -19366030 + AluSc SINE Alu 1 309 0 522 239 130 79 chr11 129417442 129417546 -19365926 + L1MC5 LINE L1 7823 7920 -41 353 260 124 23 chr11 129417571 129417836 -19365636 + L1MEd LINE L1 2458 2749 -3380 1402 172 8 27 chr11 129418610 129418899 -19364573 - AluJb SINE Alu 0 312 55 23 0 0 0 chr11 129418916 129418939 -19364533 + AT_rich Low_complexity Low_complexity 1 23 0 356 213 85 11 chr11 129418949 129419043 -19364429 + L1MEd LINE L1 2846 2946 -3183 471 35 0 0 chr11 129419046 129419103 -19364369 + (CA)n Simple_repeat Simple_repeat 2 58 0 270 0 0 0 chr11 129419908 129419938 -19363534 + (TG)n Simple_repeat Simple_repeat 2 31 0 1727 178 0 0 chr11 129420013 129420283 -19363189 + AluJb SINE Alu 34 303 -9 262 248 220 18 chr11 129420283 129420392 -19363080 - L2 LINE L2 -474 2840 2710 842 182 97 60 chr11 129420396 129420665 -19362807 - L1ME1 LINE L1 -4 6162 5884 2143 119 31 0 chr11 129420682 129420976 -19362496 - AluSq SINE Alu -8 305 3 813 143 14 41 chr11 129421018 129421165 -19362307 - FLAM_C SINE Alu 0 143 1 848 113 28 28 chr11 129421179 129421321 -19362151 - L1MC1 LINE L1 -17 6316 6175 404 240 39 79 chr11 129421329 129421583 -19361889 - L1MC1 LINE L1 -2139 5903 5660 1583 256 131 11 chr11 129421590 129422134 -19361338 + L1MEc LINE L1 44 652 -5744 1204 254 104 31 chr11 129422129 129422581 -19360891 - L1MEc LINE L1 -5872 524 40 * 1068 254 106 28 chr11 129422583 129422942 -19360530 - L2 LINE L2 -590 2724 2338 2336 98 3 3 chr11 129423151 129423447 -19360025 + AluSx SINE Alu 3 298 -14 620 312 27 21 chr11 129423447 129423633 -19359839 - MIR SINE MIR -56 206 20 426 346 167 37 chr11 129423928 129424550 -19358922 + L2 LINE L2 1422 2124 -1190 228 195 0 0 chr11 129425250 129425291 -19358181 - MER94 DNA DNA -2 132 92 267 300 30 20 chr11 129426247 129426347 -19357125 - MIR SINE MIR -120 142 42 312 294 10 29 chr11 129427833 129427935 -19355537 - MIR SINE MIR -77 185 86 532 223 73 105 chr11 129430138 129430386 -19353086 + MIR SINE MIR 3 244 -18 2412 76 0 0 chr11 129430388 129430689 -19352783 + AluSx SINE Alu 1 301 -11 187 333 11 23 chr11 129431045 129431132 -19352340 - L3 LINE CR1 -425 1152 1067 501 354 119 15 chr11 129431154 129431482 -19351990 - L3 LINE CR1 -641 936 575 240 122 0 0 chr11 129431482 129431523 -19351949 + (TC)n Simple_repeat Simple_repeat 2 42 0 212 289 0 0 chr11 129431572 129431624 -19351848 - L2 LINE L2 -1 3312 3261 253 395 19 6 chr11 129432217 129432379 -19351093 + L2 LINE L2 2895 3058 -214 614 252 26 7 chr11 129432610 129432761 -19350711 + MIR SINE MIR 2 155 -107 801 155 0 0 chr11 129432893 129433022 -19350450 - FLAM_A SINE Alu 0 142 14 277 290 40 10 chr11 129433026 129433126 -19350346 - L3 LINE CR1 -1215 362 260 250 294 18 18 chr11 129434011 129434120 -19349352 + GA-rich Low_complexity Low_complexity 3 111 0 386 265 17 43 chr11 129434755 129434872 -19348600 + MIR SINE MIR 29 142 -120 * 1289 229 201 17 chr11 129434865 129435689 -19347783 + L2 LINE L2 2349 3313 0 228 320 20 20 chr11 129435716 129435816 -19347656 + MIR SINE MIR 157 256 -6 185 333 0 0 chr11 129436269 129436326 -19347146 + L2 LINE L2 3192 3248 -65 250 298 169 0 chr11 129436561 129436685 -19346787 - MIR SINE MIR -81 181 37 251 377 60 0 chr11 129437218 129437385 -19346087 - L3b LINE CR1 -188 1395 1219 21 0 0 0 chr11 129438973 129438994 -19344478 + GC_rich Low_complexity Low_complexity 1 21 0 210 275 113 0 chr11 129439451 129439531 -19343941 - L3b LINE CR1 -190 1393 1305 455 232 225 7 chr11 129439730 129439868 -19343604 - MIR SINE MIR -5 257 90 767 187 108 0 chr11 129439982 129440148 -19343324 - MER5A DNA MER1_type -3 186 3 336 305 163 0 chr11 129440160 129440301 -19343171 - MIR SINE MIR -56 206 43 * 493 307 94 1 chr11 129440291 129440493 -19342979 - MIR SINE MIR -17 245 27 259 235 0 59 chr11 129442961 129443029 -19340443 + polypyrimidine Low_complexity Low_complexity 3 66 0 418 354 39 22 chr11 129443536 129443714 -19339758 + MIR3 SINE MIR 12 192 -16 234 91 0 0 chr11 129444112 129444145 -19339327 + (CA)n Simple_repeat Simple_repeat 2 34 0 375 289 25 33 chr11 129447201 129447322 -19336150 + MIR SINE MIR 62 181 -81 573 287 35 19 chr11 129447330 129447616 -19335856 + MER115 DNA AcHobo 9 342 -351 402 270 121 11 chr11 129447700 129447874 -19335598 + MER115 DNA AcHobo 500 692 -1 217 288 0 50 chr11 129447875 129447955 -19335517 + MIR SINE MIR 174 249 -13 315 329 90 32 chr11 129448307 129448462 -19335010 - MIR3 SINE MIR -23 185 22 216 246 15 15 chr11 129449504 129449569 -19333903 + C-rich Low_complexity Low_complexity 2 66 0 516 332 23 28 chr11 129451390 129451607 -19331865 + MIR SINE MIR 47 262 0 332 338 196 25 chr11 129452227 129452544 -19330928 - L3 LINE CR1 -34 1543 1173 492 246 8 25 chr11 129453466 129453584 -19329888 + MIR3 SINE MIR 12 127 -81 402 326 87 6 chr11 129453715 129453887 -19329585 + MIR3 SINE MIR 17 202 -6 372 22 0 0 chr11 129455060 129455105 -19328367 + (GA)n Simple_repeat Simple_repeat 1 45 0 392 188 0 0 chr11 129457753 129457817 -19325655 + L2 LINE L2 3242 3305 -8 233 275 55 11 chr11 129458278 129458369 -19325103 + MIR3 SINE MIR 114 208 0 1791 132 51 24 chr11 129458454 129458750 -19324722 - AluSx SINE Alu -8 304 1 791 279 51 4 chr11 129460279 129460516 -19322956 + MIR SINE MIR 3 250 -12 1860 168 0 0 chr11 129460559 129460844 -19322628 - AluJb SINE Alu -27 285 1 843 159 29 0 chr11 129461899 129462037 -19321435 - AluJb SINE Alu -24 288 147 198 319 29 0 chr11 129462283 129462352 -19321120 + MIR SINE MIR 60 130 -132 193 280 13 40 chr11 129462386 129462461 -19321011 - L3b LINE CR1 -222 1361 1289 304 200 0 0 chr11 129462894 129462954 -19320518 + MER96 DNA MER1_type? 115 174 -1 971 276 153 18 chr11 129463047 129463562 -19319910 - L2 LINE L2 0 3313 2738 182 372 39 0 chr11 129463700 129463778 -19319694 + MIR SINE MIR 128 208 -54 278 292 188 0 chr11 129464837 129464991 -19318481 - MIR3 SINE MIR -4 204 22 725 263 93 0 chr11 129465202 129465407 -19318065 - MIR SINE MIR -7 255 32 182 419 32 0 chr11 129465458 129465582 -19317890 - L3b LINE CR1 -50 1533 1406 378 344 24 30 chr11 129466072 129466380 -19317092 + L2 LINE L2 2722 3029 -243 675 224 16 26 chr11 129466412 129466601 -19316871 + MIR SINE MIR 53 233 -29 309 321 160 0 chr11 129466672 129466803 -19316669 + L2 LINE L2 3116 3267 -5 267 31 0 0 chr11 129466890 129466922 -19316550 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 797 201 65 7 chr11 129466924 129467078 -19316394 - AluJo SINE Alu -30 282 120 225 0 0 0 chr11 129467078 129467103 -19316369 + (T)n Simple_repeat Simple_repeat 1 25 0 972 106 8 0 chr11 129467301 129467461 -19316011 - FLAM_C SINE Alu 0 161 1 239 252 252 9 chr11 129468272 129468387 -19315085 + MIR SINE MIR 120 262 0 340 292 83 48 chr11 129468408 129468576 -19314896 - MIR SINE MIR -82 180 7 253 224 0 17 chr11 129469837 129469895 -19313577 + GA-rich Low_complexity Low_complexity 2 58 0 1018 147 37 0 chr11 129470140 129470303 -19313169 + AluJo SINE Alu 6 174 -138 775 299 136 43 chr11 129470464 129470715 -19312757 + L1MC5 LINE L1 7475 7701 -260 2198 90 0 3 chr11 129470715 129471003 -19312469 + AluSx SINE Alu 1 287 -25 775 299 136 43 chr11 129471003 129471169 -19312303 + L1MC5 LINE L1 7701 7931 -30 2036 143 0 6 chr11 129471393 129471707 -19311765 - AluSx SINE Alu 0 312 1 2109 118 0 0 chr11 129471725 129472021 -19311451 - AluSg SINE Alu -10 300 5 1187 102 0 0 chr11 129472059 129472282 -19311190 - AluSg/x SINE Alu 0 367 145 2023 154 0 0 chr11 129472303 129472615 -19310857 - AluSx SINE Alu 0 312 1 2096 145 0 0 chr11 129472622 129472932 -19310540 - AluSx SINE Alu -2 310 1 267 252 48 65 chr11 129472932 129473041 -19310431 - MIR SINE MIR -72 136 43 182 350 0 0 chr11 129473223 129473283 -19310189 + L2 LINE L2 3210 3269 -3 678 225 69 12 chr11 129474508 129474614 -19308858 + MER5A DNA MER1_type 7 129 -60 2452 77 3 10 chr11 129474614 129474926 -19308546 - AluY SINE Alu -1 310 1 678 225 69 12 chr11 129474926 129474991 -19308481 + MER5A DNA MER1_type 129 189 0 335 356 45 0 chr11 129475436 129475568 -19307904 - L2 LINE L2 -14 3258 3121 1789 144 0 0 chr11 129476008 129476271 -19307201 - AluSx SINE Alu -49 263 1 5663 81 3 16 chr11 129476566 129476778 -19306694 + L1PB2 LINE L1 5396 5609 -542 2254 117 0 3 chr11 129476778 129477077 -19306395 + AluSq SINE Alu 1 298 -15 5663 81 3 16 chr11 129477077 129477630 -19305842 + L1PB2 LINE L1 5609 6151 0 2363 83 0 13 chr11 129477642 129477943 -19305529 - AluSq SINE Alu -16 297 1 180 0 0 0 chr11 129478492 129478512 -19304960 + (TG)n Simple_repeat Simple_repeat 1 20 0 2305 82 4 0 chr11 129478512 129478791 -19304681 - AluSp SINE Alu -33 280 1 2027 129 0 42 chr11 129480428 129480739 -19302733 + AluSx SINE Alu 3 300 -12 1618 164 51 24 chr11 129480974 129481149 -19302323 - AluJo SINE Alu -12 300 112 317 24 24 0 chr11 129481149 129481191 -19302281 + (TTTTA)n Simple_repeat Simple_repeat 4 46 0 1618 164 51 24 chr11 129481191 129481307 -19302165 - AluJo SINE Alu -200 112 1 2808 74 16 5 chr11 129481315 129481692 -19301780 - L1PB1 LINE L1 -2 6149 5769 5674 151 8 26 chr11 129481695 129481862 -19301610 - L1PB1 LINE L1 -197 5954 5786 183 80 0 0 chr11 129481862 129481887 -19301585 + (TA)n Simple_repeat Simple_repeat 2 26 0 5674 151 8 26 chr11 129481887 129481993 -19301479 - L1PB1 LINE L1 -365 5786 5680 2187 129 10 0 chr11 129481993 129482287 -19301185 - AluSg SINE Alu -13 297 1 5674 151 8 26 chr11 129482287 129483423 -19300049 - L1PB1 LINE L1 -471 5680 4525 2180 126 35 6 chr11 129483423 129483765 -19299707 + THE1A LTR MaLR 1 352 -3 2355 99 0 0 chr11 129483765 129484069 -19299403 + AluY SINE Alu 1 304 -7 5674 151 8 26 chr11 129484069 129484081 -19299391 - L1PB1 LINE L1 -1625 4526 4515 12251 81 4 1 chr11 129484081 129485656 -19297816 + THE1A-int LTR MaLR 1 1580 0 2214 104 8 83 chr11 129485656 129485718 -19297754 + THE1A LTR MaLR 1 66 -289 2133 76 43 11 chr11 129485718 129485994 -19297478 - AluY SINE Alu -26 285 1 2214 104 8 83 chr11 129485994 129486315 -19297157 + THE1A LTR MaLR 66 355 0 5674 151 8 26 chr11 129486315 129486711 -19296761 - L1PB1 LINE L1 -1634 4517 4167 709 266 62 4 chr11 129487700 129487926 -19295546 - MIR SINE MIR -14 248 10 2261 100 3 10 chr11 129489036 129489345 -19294127 - AluSx SINE Alu -5 307 1 2066 136 7 0 chr11 129489345 129489640 -19293832 - AluSx SINE Alu -15 297 1 199 174 37 165 chr11 129490832 129490941 -19292531 - MIR SINE MIR -50 212 118 204 266 0 16 chr11 129491066 129491130 -19292342 - L2 LINE L2 -13 3259 3197 21 0 0 0 chr11 129491885 129491906 -19291566 + AT_rich Low_complexity Low_complexity 1 21 0 226 237 140 21 chr11 129492357 129492450 -19291022 - L1ME LINE L1 -393 5728 5625 1995 118 0 35 chr11 129492900 129493213 -19290259 - AluY SINE Alu -9 302 1 205 351 88 19 chr11 129494710 129495140 -19288332 - L2 LINE L2 -481 2833 2374 624 139 26 17 chr11 129495418 129495533 -19287939 + L1MB8 LINE L1 6063 6178 0 786 176 75 0 chr11 129496433 129496592 -19286880 + MER96 DNA MER1_type 1 171 -4 2022 216 128 38 chr11 129497189 129498018 -19285454 + L2 LINE L2 2301 3223 -90 327 307 148 5 chr11 129500439 129500628 -19282844 - MIR SINE MIR 0 262 47 1558 144 11 26 chr11 129501188 129501459 -19282013 + AluJb SINE Alu 25 291 -21 304 238 0 36 chr11 129501651 129501735 -19281737 - L2 LINE L2 -1 3312 3232 1651 143 12 78 chr11 129502731 129503052 -19280420 - AluJb SINE Alu -10 302 3 964 207 0 0 chr11 129503070 129503244 -19280228 - FRAM SINE Alu -2 174 1 205 317 12 12 chr11 129503341 129503423 -19280049 + MIR SINE MIR 9 90 -172 23 33 0 0 chr11 129503503 129503533 -19279939 + AT_rich Low_complexity Low_complexity 1 30 0 1815 155 0 19 chr11 129504485 129504756 -19278716 - AluJb SINE Alu -45 267 2 200 223 57 134 chr11 129505356 129505513 -19277959 - MIR SINE MIR -98 164 20 242 324 72 68 chr11 129507435 129507657 -19275815 - L2 LINE L2 -181 3091 2869 365 276 28 61 chr11 129508142 129508356 -19275116 - L2 LINE L2 -2 3311 3105 1366 161 106 12 chr11 129508603 129508858 -19274614 - AluJo SINE Alu -33 279 1 2508 51 7 0 chr11 129509300 129509593 -19273879 + AluY SINE Alu 1 295 -16 726 165 181 5 chr11 129510883 129511071 -19272401 - MIR SINE MIR -34 228 8 2190 115 3 0 chr11 129511304 129511599 -19271873 - AluSp SINE Alu -16 297 2 222 365 56 8 chr11 129511700 129511826 -19271646 + L2 LINE L2 3137 3268 -4 1894 79 11 11 chr11 129512304 129512569 -19270903 + L1M2 LINE L1 5318 5582 -715 2156 131 56 3 chr11 129512569 129512928 -19270544 + MER83B LTR ERV1 1 378 0 11313 128 36 26 chr11 129513100 129514521 -19268951 + MER83B-int LTR ERV1 222 1628 -3252 1977 145 0 79 chr11 129514521 129514887 -19268585 - MER1B DNA MER1_type 0 337 1 11313 128 36 26 chr11 129514887 129515339 -19268133 + MER83B-int LTR ERV1 1628 2219 -2661 1859 165 3 14 chr11 129515339 129515636 -19267836 + AluJb SINE Alu 1 294 -18 11313 128 36 26 chr11 129515636 129515882 -19267590 + MER83B-int LTR ERV1 2219 2461 -2419 5354 110 30 21 chr11 129515868 129516018 -19267454 + MER83B-int LTR ERV1 2803 2950 -1930 * 2256 110 7 0 chr11 129516018 129516317 -19267155 + AluSx SINE Alu 1 301 -11 5354 110 30 21 chr11 129516317 129517013 -19266459 + MER83B-int LTR ERV1 2950 3656 -1224 473 216 43 58 chr11 129517622 129517761 -19265711 + L1MA9 LINE L1 6155 6291 0 413 196 58 48 chr11 129519004 129519096 -19264376 + MER63 DNA MER1_type 701 791 -270 1170 148 55 59 chr11 129519096 129519333 -19264139 - MER46A DNA MER2_type 0 236 1 413 196 58 48 chr11 129519333 129519373 -19264099 + MER63 DNA MER1_type 791 1059 -2 2492 126 21 0 chr11 129519440 129519813 -19263659 + MER57A LTR ERV1 1 381 -22 198 0 0 0 chr11 129519990 129520012 -19263460 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 2418 96 0 0 chr11 129522049 129522351 -19261121 + AluSc SINE Alu 1 302 -7 868 197 32 5 chr11 129523521 129523709 -19259763 + MIR SINE MIR 64 256 -6 5735 245 55 31 chr11 129523738 129525791 -19257681 + L2 LINE L2 1220 3313 0 212 311 78 22 chr11 129526117 129526207 -19257265 + L2 LINE L2 2622 2716 -598 828 269 16 51 chr11 129526766 129526912 -19256560 + MIR SINE MIR 2 137 -125 2020 137 3 16 chr11 129526912 129527219 -19256253 + AluSx SINE Alu 1 303 -9 828 269 16 51 chr11 129527219 129527329 -19256143 + MIR SINE MIR 137 249 -13 265 310 74 108 chr11 129527335 129527658 -19255814 - L2 LINE L2 -6 3266 2955 267 31 0 0 chr11 129527926 129527958 -19255514 + (CA)n Simple_repeat Simple_repeat 1 32 0 1199 266 113 23 chr11 129528880 129529439 -19254033 - L1ME4a LINE L1 -2 6119 5511 330 221 20 0 chr11 129529463 129529617 -19253855 + GA-rich Low_complexity Low_complexity 1 157 0 1462 147 33 0 chr11 129530705 129530916 -19252556 + MER20 DNA MER1_type 2 219 0 318 276 18 98 chr11 129530966 129531055 -19252417 - MIR SINE MIR -56 206 134 2271 129 0 0 chr11 129531055 129531365 -19252107 + AluSx SINE Alu 1 310 -2 318 276 18 98 chr11 129531365 129531438 -19252034 - MIR SINE MIR -128 134 57 506 303 30 0 chr11 129531874 129532006 -19251466 - L2 LINE L2 0 3272 3137 486 0 0 0 chr11 129533933 129533987 -19249485 + (CA)n Simple_repeat Simple_repeat 2 55 0 757 271 52 44 chr11 129534577 129534828 -19248644 + MIR SINE MIR 2 254 -8 276 309 25 0 chr11 129534940 129535021 -19248451 - L3 LINE CR1 -424 1153 1071 246 186 43 29 chr11 129535100 129535170 -19248302 + L2 LINE L2 2906 2976 -296 534 335 16 22 chr11 129535319 129535501 -19247971 + MIR SINE MIR 3 183 -79 188 237 102 0 chr11 129535556 129535615 -19247857 + MIR SINE MIR 198 262 0 376 288 165 57 chr11 129536362 129536690 -19246782 + L2 LINE L2 1235 1526 -1788 2186 113 0 10 chr11 129536690 129536990 -19246482 + AluSx SINE Alu 1 297 -15 376 288 165 57 chr11 129536990 129537207 -19246265 + L2 LINE L2 1526 1839 -1475 623 302 98 65 chr11 129537393 129537998 -19245474 - L2 LINE L2 0 3313 2684 2415 83 0 0 chr11 129537998 129538298 -19245174 + AluY SINE Alu 1 300 -11 623 302 98 65 chr11 129538298 129538339 -19245133 - L2 LINE L2 -629 2684 2646 1202 109 253 18 chr11 129538344 129538565 -19244907 + AluSg1 SINE Alu 25 297 -12 525 278 134 5 chr11 129538646 129538833 -19244639 - L2 LINE L2 -817 2497 2287 872 165 74 28 chr11 129539009 129539185 -19244287 + MER58B DNA MER1_type 158 341 0 235 391 58 0 chr11 129539358 129539514 -19243958 + L2 LINE L2 2105 2269 -1045 227 213 49 0 chr11 129539696 129539757 -19243715 - LTR33 LTR ERVL -2 519 456 1049 172 0 6 chr11 129539779 129539948 -19243524 - AluSg/x SINE Alu 0 312 145 858 222 115 17 chr11 129540066 129540300 -19243172 - LTR33 LTR ERVL -241 280 24 549 262 44 38 chr11 129540385 129540568 -19242904 + MER63A DNA MER1_type 2 185 -25 942 123 0 8 chr11 129540690 129540820 -19242652 - FLAM_C SINE Alu -2 131 3 814 107 0 0 chr11 129541112 129541224 -19242248 - AluSg SINE Alu -9 300 189 * 1133 54 0 0 chr11 129541223 129541353 -19242119 - AluSg SINE Alu -180 130 1 561 88 0 0 chr11 129542074 129542169 -19241303 - AluSg/x SINE Alu 0 309 215 848 250 4 40 chr11 129542180 129542408 -19241064 + L1ME3A LINE L1 5945 6164 -6 1730 143 31 71 chr11 129542953 129543037 -19240435 + L1MB7 LINE L1 5842 5928 -256 1509 146 4 78 chr11 129543037 129543340 -19240132 - AluSx SINE Alu 0 304 23 1730 143 31 71 chr11 129543340 129543605 -19239867 + L1MB7 LINE L1 5928 6178 -6 2366 89 0 13 chr11 129543606 129543922 -19239550 - AluSq SINE Alu -1 312 1 279 0 0 0 chr11 129544116 129544147 -19239325 + (TG)n Simple_repeat Simple_repeat 1 31 0 25 0 0 0 chr11 129544367 129544392 -19239080 + AT_rich Low_complexity Low_complexity 1 25 0 362 272 70 60 chr11 129548688 129549019 -19234453 - L1MC4 LINE L1 -138 7904 7571 1971 149 13 0 chr11 129549396 129549698 -19233774 + AluJb SINE Alu 1 306 -6 21 57 0 0 chr11 129550627 129550662 -19232810 + AT_rich Low_complexity Low_complexity 1 35 0 1603 186 17 0 chr11 129550754 129551045 -19232427 + AluSq SINE Alu 1 296 -17 4293 158 69 21 chr11 129551083 129551625 -19231847 + L1MB7 LINE L1 4907 5422 -762 2096 183 75 8 chr11 129551625 129552024 -19231448 + MSTA LTR MaLR 3 428 0 4293 158 69 21 chr11 129552024 129552675 -19230797 + L1MB7 LINE L1 5422 6165 -19 1063 151 93 0 chr11 129553404 129553576 -19229896 + MER5A DNA MER1_type 2 189 0 263 191 248 29 chr11 129553676 129553781 -19229691 - L2 LINE L2 -2 3311 3184 198 222 0 44 chr11 129553927 129553972 -19229500 - MIR3 SINE MIR -21 187 145 268 209 0 0 chr11 129554149 129554192 -19229280 - MIR3 SINE MIR -53 155 113 461 271 181 9 chr11 129554340 129554550 -19228922 + MIR SINE MIR 15 260 -2 310 217 325 0 chr11 129554575 129554695 -19228777 - MIR SINE MIR -56 206 48 586 302 78 33 chr11 129554775 129555020 -19228452 + MIR SINE MIR 1 256 -6 389 253 10 10 chr11 129555028 129555127 -19228345 + MIR SINE MIR 153 251 -11 358 304 0 11 chr11 129557975 129558067 -19225405 - MIR SINE MIR -115 147 57 216 0 0 0 chr11 129561089 129561113 -19222359 + (T)n Simple_repeat Simple_repeat 1 24 0 761 252 60 18 chr11 129561147 129561365 -19222107 + MIR SINE MIR 33 259 -3 2100 211 83 32 chr11 129561388 129561957 -19221515 + L1ME2 LINE L1 5567 6164 0 390 121 0 0 chr11 129562065 129562131 -19221341 + (TGGA)n Simple_repeat Simple_repeat 4 69 0 334 260 58 0 chr11 129562138 129562242 -19221230 + L1MC4 LINE L1 7932 8041 -1 441 289 72 26 chr11 129562405 129562557 -19220915 - MIR SINE MIR 0 262 104 328 344 116 31 chr11 129562552 129562776 -19220696 - L2 LINE L2 0 3272 3030 * 344 269 11 21 chr11 129562861 129562954 -19220518 - L2 LINE L2 0 3313 3222 869 213 57 25 chr11 129562955 129563199 -19220273 - L2 LINE L2 -253 3060 2809 5450 151 9 18 chr11 129563231 129564221 -19219251 + L1MB3 LINE L1 5198 6174 -9 316 221 15 0 chr11 129564234 129564302 -19219170 - L2 LINE L2 -569 2745 2677 438 267 118 0 chr11 129564307 129564442 -19219030 + MIR SINE MIR 112 262 0 668 362 60 25 chr11 129564508 129565071 -19218401 - L2 LINE L2 -337 2977 2395 1175 151 142 5 chr11 129565132 129565350 -19218122 + LTR54B LTR ERV1 1 248 -250 195 42 0 0 chr11 129565354 129565378 -19218094 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2299 110 3 0 chr11 129565397 129565706 -19217766 - AluSp SINE Alu -3 310 1 261 0 0 0 chr11 129565718 129565747 -19217725 + (TG)n Simple_repeat Simple_repeat 2 30 0 2133 121 10 0 chr11 129565747 129566034 -19217438 - AluSq SINE Alu -20 293 1 899 203 0 0 chr11 129566089 129566252 -19217220 + FRAM SINE Alu 1 163 -13 1225 119 5 0 chr11 129566259 129566444 -19217028 + LTR54 LTR ERV1 325 510 0 1868 110 0 0 chr11 129566785 129567031 -19216441 + AluSc SINE Alu 45 290 -19 369 0 0 0 chr11 129567612 129567653 -19215819 + (TG)n Simple_repeat Simple_repeat 1 41 0 186 289 86 53 chr11 129567680 129567832 -19215640 - L2 LINE L2 -1879 1435 1279 220 307 57 11 chr11 129567832 129567920 -19215552 - MIR SINE MIR -84 124 33 254 319 95 0 chr11 129568247 129568363 -19215109 - L2 LINE L2 -9 3304 3178 1999 128 17 0 chr11 129568619 129568916 -19214556 - AluJo SINE Alu -8 304 3 523 283 29 2 chr11 129568938 129569091 -19214381 - MIR SINE MIR -36 172 35 274 154 11 165 chr11 129569988 129570079 -19213393 + MER103 DNA DNA 23 99 -67 388 248 106 9 chr11 129570147 129570260 -19213212 + MER5C DNA MER1_type 1 124 -200 618 246 28 102 chr11 129570747 129570908 -19212564 - MARNA DNA Mariner -60 526 393 1928 132 0 35 chr11 129570908 129571196 -19212276 - AluSx SINE Alu -34 278 1 618 246 28 102 chr11 129571196 129571318 -19212154 - MARNA DNA Mariner -193 393 264 2288 99 0 3 chr11 129571412 129571705 -19211767 + AluSc SINE Alu 1 292 -17 668 286 114 54 chr11 129571969 129572249 -19211223 + L2 LINE L2 2976 3272 0 185 366 151 0 chr11 129572758 129572851 -19210621 - L2 LINE L2 -16 3256 3150 271 315 65 74 chr11 129572864 129573080 -19210392 - MIR SINE MIR -29 233 20 23 0 0 0 chr11 129573101 129573124 -19210348 + AT_rich Low_complexity Low_complexity 1 23 0 1768 226 104 85 chr11 129573126 129573309 -19210163 - L1MC5 LINE L1 -36 7925 7747 2069 171 55 10 chr11 129573309 129573694 -19209778 - MER93a LTR ERV1 0 402 1 1768 226 104 85 chr11 129573694 129573713 -19209759 - L1MC5 LINE L1 -214 7747 7730 1337 189 140 8 chr11 129573713 129573978 -19209494 - AluJo SINE Alu -2 300 1 1768 226 104 85 chr11 129573978 129574344 -19209128 - L1MC5 LINE L1 -231 7730 7372 722 206 118 6 chr11 129574344 129574514 -19208958 - MER5A DNA MER1_type 0 189 1 1768 226 104 85 chr11 129574514 129574825 -19208647 - L1MC5 LINE L1 -589 7372 7022 2475 72 0 0 chr11 129574825 129575132 -19208340 + AluY SINE Alu 1 307 -4 1768 226 104 85 chr11 129575132 129575200 -19208272 - L1MC5 LINE L1 -939 7022 6957 917 119 62 12 chr11 129575237 129575397 -19208075 + Tigger1 DNA MER2_type 331 498 -1920 331 181 76 6 chr11 129575400 129575489 -19207983 - L1MC4a LINE L1 -873 6935 6865 759 188 21 17 chr11 129576262 129576426 -19207046 - L1MC5 LINE L1 -1130 6865 6672 6691 119 21 0 chr11 129576464 129577424 -19206048 + Tigger1 DNA MER2_type 2 981 -1437 2065 135 3 13 chr11 129577424 129577735 -19205737 + AluJo SINE Alu 1 308 -4 854 215 0 0 chr11 129577745 129577894 -19205578 + FRAM SINE Alu 1 148 -28 2290 101 0 36 chr11 129577894 129578200 -19205272 - AluSx SINE Alu -17 295 1 9627 105 13 29 chr11 129578227 129578515 -19204957 + Tigger1 DNA MER2_type 974 1265 -1153 2580 77 0 0 chr11 129578515 129578826 -19204646 - AluY SINE Alu 0 311 1 9627 105 13 29 chr11 129578826 129579782 -19203690 + Tigger1 DNA MER2_type 1265 2194 -224 1786 141 10 42 chr11 129579782 129580088 -19203384 - AluJb SINE Alu -14 298 3 9627 105 13 29 chr11 129580088 129580306 -19203166 + Tigger1 DNA MER2_type 2194 2414 -4 348 252 121 73 chr11 129580457 129580663 -19202809 + HAL1 LINE L1 1 216 -2291 * 2489 286 36 48 chr11 129580656 129581442 -19202030 + L1ME3A LINE L1 3589 4382 -1764 2118 113 10 3 chr11 129581442 129581734 -19201738 - AluSx SINE Alu -18 294 1 2489 286 36 48 chr11 129581734 129581877 -19201595 + L1ME3A LINE L1 4382 4525 -1621 1864 169 0 3 chr11 129581877 129582167 -19201305 + AluJb SINE Alu 1 289 -23 2489 286 36 48 chr11 129582167 129582662 -19200810 + L1ME3A LINE L1 4525 4998 -1148 522 307 87 43 chr11 129582764 129582988 -19200484 + L1ME3A LINE L1 5474 5687 -464 2756 107 40 24 chr11 129582994 129583229 -19200243 - MSTA LTR MaLR 0 428 181 2389 80 17 0 chr11 129583229 129583529 -19199943 - AluSx SINE Alu -7 305 1 2756 107 40 24 chr11 129583529 129583714 -19199758 - MSTA LTR MaLR -247 181 1 879 127 50 28 chr11 129583714 129583888 -19199584 + L1MB2 LINE L1 5991 6171 0 522 307 87 43 chr11 129583888 129583917 -19199555 + L1ME3A LINE L1 5687 5738 -413 1993 225 99 7 chr11 129584212 129584906 -19198566 + MER20B DNA MER1_type 1 777 -6 1748 170 7 10 chr11 129585161 129585449 -19198023 + AluJo SINE Alu 1 287 -25 336 294 191 5 chr11 129585521 129585725 -19197747 - L1ME4a LINE L1 -1 6120 5879 379 223 62 0 chr11 129585841 129585971 -19197501 + L2 LINE L2 1690 1827 -1487 1454 110 177 4 chr11 129586032 129586286 -19197186 + AluJo SINE Alu 1 298 -4 1040 205 23 0 chr11 129586418 129586633 -19196839 - L1ME1 LINE L1 -1 6165 5946 775 176 7 7 chr11 129586653 129586789 -19196683 + AluJb SINE Alu 1 136 -176 2893 193 41 44 chr11 129586813 129587998 -19195474 - L1ME1 LINE L1 -223 5941 4771 514 155 60 0 chr11 129587997 129588113 -19195359 + L1M4 LINE L1 2866 2988 -3158 * 275 243 19 28 chr11 129588111 129588218 -19195254 + L1ME3A LINE L1 5840 5945 -225 * 1480 244 62 30 chr11 129588245 129588684 -19194788 + LTR16A1 LTR ERVL 1 453 -4 1493 281 95 20 chr11 129588688 129589807 -19193665 + HERV16 LTR ERVL 1 1448 -3758 2280 104 31 25 chr11 129589807 129589970 -19193502 - L1MA1 LINE L1 0 6302 6141 2188 115 3 10 chr11 129589970 129590301 -19193171 - AluSx SINE Alu 0 312 1 2280 104 31 25 chr11 129590301 129590493 -19192979 - L1MA1 LINE L1 -161 6141 5945 1493 281 95 20 chr11 129590493 129590730 -19192742 + HERV16 LTR ERVL 1448 1666 -3540 610 130 0 0 chr11 129590732 129590824 -19192648 + MER53 DNA DNA 4 95 -94 3524 303 41 27 chr11 129590908 129591877 -19191595 + HERV16 LTR ERVL 1709 2663 -3101 2337 105 0 10 chr11 129591877 129592190 -19191282 - AluSp SINE Alu -3 310 1 3524 303 41 27 chr11 129592190 129593035 -19190437 + HERV16 LTR ERVL 2663 3495 -2269 1988 146 3 3 chr11 129593035 129593343 -19190129 + AluSx SINE Alu 3 310 -2 3524 303 41 27 chr11 129593343 129594533 -19188939 + HERV16 LTR ERVL 3495 4973 -791 536 266 126 56 chr11 129595011 129595425 -19188047 + LTR16A LTR ERVL 6 441 -9 291 230 121 69 chr11 129595428 129595602 -19187870 + HAL1 LINE L1 2311 2493 -14 1934 156 3 0 chr11 129595627 129595916 -19187556 + AluSq SINE Alu 1 290 -23 1767 153 7 7 chr11 129596075 129596350 -19187122 - AluJb SINE Alu -4 308 34 401 295 62 0 chr11 129596427 129596556 -19186916 + L2 LINE L2 2915 3051 -221 990 177 6 0 chr11 129596656 129596814 -19186658 - FAM SINE Alu -21 164 6 200 326 90 0 chr11 129596877 129596966 -19186506 + L2 LINE L2 3176 3272 0 609 200 40 46 chr11 129596990 129597165 -19186307 + MIR SINE MIR 77 250 -12 346 120 0 0 chr11 129597498 129597548 -19185924 + MADE1 DNA Mariner 30 79 -1 297 327 35 18 chr11 129598725 129598838 -19184634 - MIR SINE MIR -116 146 32 308 294 163 20 chr11 129598968 129599121 -19184351 - MER5A DNA MER1_type -6 183 9 1822 147 4 0 chr11 129599233 129599491 -19183981 + AluJb SINE Alu 1 259 -53 402 21 0 0 chr11 129599500 129599547 -19183925 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 2088 128 7 10 chr11 129600906 129601203 -19182269 + AluSx SINE Alu 1 296 -16 393 119 0 0 chr11 129601759 129601818 -19181654 + L2 LINE L2 3255 3313 0 221 355 16 79 chr11 129601847 129602036 -19181436 - L2 LINE L2 -96 3176 3000 713 260 46 9 chr11 129602083 129602302 -19181170 + MIR SINE MIR 4 230 -32 2277 99 0 0 chr11 129602316 129602624 -19180848 + AluSx SINE Alu 1 308 0 271 294 33 0 chr11 129602674 129602766 -19180706 - MIR SINE MIR -1 261 167 739 228 0 43 chr11 129602859 129603043 -19180429 + FRAM SINE Alu 1 176 0 3503 85 8 6 chr11 129603138 129603611 -19179861 - L1PA13 LINE L1 0 6163 5690 31 0 0 0 chr11 129603819 129603850 -19179622 + AT_rich Low_complexity Low_complexity 1 31 0 684 244 101 10 chr11 129604028 129604237 -19179235 - MIR SINE MIR -14 248 21 615 284 15 45 chr11 129606301 129606569 -19176903 - MIR SINE MIR 0 262 3 38 39 0 0 chr11 129607872 129607924 -19175548 + AT_rich Low_complexity Low_complexity 1 52 0 447 19 0 0 chr11 129607970 129608022 -19175450 + (CA)n Simple_repeat Simple_repeat 2 53 0 236 293 70 20 chr11 129608255 129608408 -19175064 - MIR3 SINE MIR -54 154 30 263 255 14 21 chr11 129609378 129609519 -19173953 + GA-rich Low_complexity Low_complexity 2 141 0 620 262 48 29 chr11 129610310 129610520 -19172952 - MIR SINE MIR 0 262 49 1511 69 0 15 chr11 129610581 129610783 -19172689 + L1PA8 LINE L1 5972 6170 -2 2327 108 0 3 chr11 129610799 129611105 -19172367 + AluSg SINE Alu 2 306 -4 181 336 122 28 chr11 129611149 129611256 -19172216 - L2 LINE L2 0 3313 3197 2136 134 0 13 chr11 129611446 129611753 -19171719 + AluSg SINE Alu 1 303 -7 304 382 30 0 chr11 129611861 129612060 -19171412 - MIR SINE MIR -20 242 38 204 125 0 0 chr11 129613588 129613620 -19169852 + (T)n Simple_repeat Simple_repeat 1 32 0 648 240 168 57 chr11 129613622 129613955 -19169517 - MER57A LTR ERV1 -31 372 3 621 274 24 100 chr11 129613957 129614231 -19169241 - MER51-int LTR ERV1 -490 7326 7087 2162 125 0 0 chr11 129614231 129614518 -19168954 - AluSx SINE Alu -25 287 1 621 274 24 100 chr11 129614518 129614623 -19168849 - MER51-int LTR ERV1 -729 7087 6976 492 323 20 5 chr11 129614814 129615012 -19168460 - MER57B LTR ERV1 -164 270 70 545 155 19 10 chr11 129615012 129615115 -19168357 - L1ME3 LINE L1 -154 6008 5905 204 179 0 0 chr11 129615116 129615155 -19168317 + GA-rich Low_complexity Low_complexity 2 40 0 2197 108 7 10 chr11 129615196 129615502 -19167970 - AluSx SINE Alu -7 305 1 450 124 34 0 chr11 129616300 129616389 -19167083 + (TGGA)n Simple_repeat Simple_repeat 2 93 0 4998 66 23 65 chr11 129617320 129617723 -19165749 + L1PB1 LINE L1 5414 5832 -319 306 0 0 0 chr11 129617723 129617757 -19165715 + (TG)n Simple_repeat Simple_repeat 2 35 0 4998 66 23 65 chr11 129617757 129618066 -19165406 + L1PB1 LINE L1 5832 6094 -57 2243 110 0 3 chr11 129618066 129618365 -19165107 + AluSg SINE Alu 1 298 -12 4998 66 23 65 chr11 129618365 129618421 -19165051 + L1PB1 LINE L1 6094 6151 0 322 201 17 121 chr11 129618770 129618871 -19164601 + L1MEc LINE L1 983 1046 -5350 2379 97 0 3 chr11 129618871 129619181 -19164291 + AluSx SINE Alu 1 309 -3 322 201 17 121 chr11 129619181 129619318 -19164154 + L1MEc LINE L1 1046 1196 -5200 * 2112 186 75 112 chr11 129619292 129619499 -19163973 + L1MEc LINE L1 2341 2554 -3661 2105 146 0 0 chr11 129619499 129619793 -19163679 + AluSx SINE Alu 4 297 -15 824 153 0 0 chr11 129619802 129619946 -19163526 + L1MA8 LINE L1 6147 6290 -1 2112 186 75 112 chr11 129619946 129620001 -19163471 + L1MEc LINE L1 2562 2617 -3598 2124 108 0 0 chr11 129620001 129620278 -19163194 + AluSq SINE Alu 25 301 -12 2112 186 75 112 chr11 129620278 129620378 -19163094 + L1MEc LINE L1 2617 2719 -3496 1923 188 21 0 chr11 129620378 129620713 -19162759 - MER2 DNA MER2_type 0 344 3 2112 186 75 112 chr11 129620713 129620938 -19162534 + L1MEc LINE L1 2719 2901 -3314 2041 259 49 25 chr11 129620938 129621547 -19161925 + MLT1E2 LTR MaLR 3 626 0 2112 186 75 112 chr11 129621547 129621820 -19161652 + L1MEc LINE L1 2901 3182 -3033 186 43 0 0 chr11 129621824 129621847 -19161625 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 2942 99 30 0 chr11 129621858 129622293 -19161179 + L1PA13 LINE L1 5709 6156 -7 370 196 34 155 chr11 129622365 129622650 -19160822 + L1MEc LINE L1 3164 3413 -2802 2017 136 10 0 chr11 129622650 129622952 -19160520 + AluSx SINE Alu 1 305 -7 1606 130 93 4 chr11 129622962 129623232 -19160240 - MLT1A1 LTR MaLR 0 365 72 249 176 0 0 chr11 129623232 129623306 -19160166 + T-rich Low_complexity Low_complexity 1 74 0 6735 56 7 51 chr11 129623307 129624477 -19158995 - SVA Other Other -551 1384 433 1821 134 39 11 chr11 129624593 129624876 -19158596 + AluJb SINE Alu 3 293 -19 1507 112 86 0 chr11 129624893 129625161 -19158311 + L1MA4 LINE L1 6003 6293 -7 1824 147 7 20 chr11 129625261 129625554 -19157918 + AluJo SINE Alu 20 308 -4 288 0 0 0 chr11 129625559 129625591 -19157881 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 295 70 0 0 chr11 129625591 129625634 -19157838 + AluY SINE Alu 173 215 -86 2224 117 0 0 chr11 129625755 129626053 -19157419 + AluSx SINE Alu 1 298 -14 394 215 31 32 chr11 129626516 129626678 -19156794 + MIR SINE MIR 6 160 -62 1314 105 12 0 chr11 129627076 129627248 -19156224 + AluSx SINE Alu 1 174 -138 21 0 0 0 chr11 129629137 129629158 -19154314 + AT_rich Low_complexity Low_complexity 1 21 0 890 227 87 4 chr11 129629689 129629918 -19153554 - MIR SINE MIR 0 262 15 2712 32 0 25 chr11 129630058 129630373 -19153099 - AluY SINE Alu -4 307 1 2214 78 7 42 chr11 129630373 129630679 -19152793 - AluSp SINE Alu -18 295 1 571 240 86 11 chr11 129631764 129631939 -19151533 - MIR SINE MIR 0 262 75 403 167 0 0 chr11 129631944 129632004 -19151468 + AluJ/FLAM SINE Alu 2 61 -251 26 0 0 0 chr11 129632115 129632141 -19151331 + AT_rich Low_complexity Low_complexity 1 26 0 233 37 0 0 chr11 129632142 129632169 -19151303 + (A)n Simple_repeat Simple_repeat 1 27 0 23 0 0 0 chr11 129632176 129632199 -19151273 + AT_rich Low_complexity Low_complexity 1 23 0 452 30 0 45 chr11 129632303 129632370 -19151102 + (A)n Simple_repeat Simple_repeat 1 64 0 24 0 0 0 chr11 129632480 129632504 -19150968 + AT_rich Low_complexity Low_complexity 1 24 0 216 0 0 0 chr11 129632702 129632726 -19150746 + (A)n Simple_repeat Simple_repeat 1 24 0 2021 109 9 67 chr11 129632754 129633085 -19150387 - AluSx SINE Alu 0 312 1 376 148 43 5 chr11 129633367 129633484 -19149988 + MER30B DNA MER1_type 2 183 -47 2282 108 0 7 chr11 129633526 129633831 -19149641 - AluSx SINE Alu -9 303 1 955 159 40 28 chr11 129633902 129634078 -19149394 - AluJo SINE Alu -22 290 113 1785 149 7 17 chr11 129634088 129634390 -19149082 - AluSx SINE Alu -13 299 1 1604 176 3 24 chr11 129634418 129634713 -19148759 + AluJb SINE Alu 1 289 -23 23 0 0 0 chr11 129635045 129635068 -19148404 + AT_rich Low_complexity Low_complexity 1 23 0 777 207 11 29 chr11 129635164 129635338 -19148134 + AluSx SINE Alu 41 211 -101 2199 106 3 0 chr11 129635588 129635870 -19147602 - AluSx SINE Alu -29 283 1 32 31 0 46 chr11 129635870 129635911 -19147561 + AT_rich Low_complexity Low_complexity 1 39 -23 1860 143 3 51 chr11 129635911 129636090 -19147382 - AluSx SINE Alu -12 300 141 2368 90 10 10 chr11 129636090 129636402 -19147070 - AluSx SINE Alu 0 312 1 1860 143 3 51 chr11 129636402 129636537 -19146935 - AluSx SINE Alu -171 141 1 32 31 0 46 chr11 129636537 129636560 -19146912 + AT_rich Low_complexity Low_complexity 39 62 0 1877 108 59 21 chr11 129636564 129636850 -19146622 + AluSx SINE Alu 1 297 -15 22 0 0 0 chr11 129636997 129637019 -19146453 + AT_rich Low_complexity Low_complexity 1 22 0 201 39 0 0 chr11 129637084 129637110 -19146362 + (T)n Simple_repeat Simple_repeat 1 26 0 311 51 0 68 chr11 129637263 129637322 -19146150 + (T)n Simple_repeat Simple_repeat 1 55 0 2173 88 4 7 chr11 129637541 129637815 -19145657 - AluSx SINE Alu -39 273 1 24 0 0 0 chr11 129637815 129637839 -19145633 + AT_rich Low_complexity Low_complexity 1 24 0 205 98 49 0 chr11 129637839 129637880 -19145592 + (TA)n Simple_repeat Simple_repeat 1 43 0 1911 145 3 30 chr11 129637880 129638038 -19145434 - AluSx SINE Alu -23 289 128 257 51 26 0 chr11 129638038 129638077 -19145395 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 2258 72 11 11 chr11 129638077 129638356 -19145116 - AluSx SINE Alu -31 281 3 1911 145 3 30 chr11 129638356 129638493 -19144979 - AluSx SINE Alu -182 130 1 22 0 0 0 chr11 129638495 129638517 -19144955 + AT_rich Low_complexity Low_complexity 1 22 0 1048 106 45 34 chr11 129638520 129638699 -19144773 + AluSq SINE Alu 1 181 -132 295 79 0 0 chr11 129638700 129638738 -19144734 + AluSc SINE Alu 213 250 -49 26 0 0 0 chr11 129639166 129639192 -19144280 + AT_rich Low_complexity Low_complexity 1 26 0 2348 85 3 3 chr11 129639192 129639486 -19143986 + AluSp SINE Alu 1 294 -19 1228 104 17 0 chr11 129639518 129639691 -19143781 - AluSg/x SINE Alu -16 294 119 180 0 0 0 chr11 129639734 129639754 -19143718 + (G)n Simple_repeat Simple_repeat 1 20 0 310 341 12 18 chr11 129639754 129639924 -19143548 - AluSg/x SINE Alu -66 236 68 214 174 0 0 chr11 129639948 129639994 -19143478 + T-rich Low_complexity Low_complexity 1 46 0 243 0 0 0 chr11 129640025 129640052 -19143420 + (C)n Simple_repeat Simple_repeat 1 27 0 528 273 0 0 chr11 129640169 129640319 -19143153 + AluSp/q SINE Alu 164 313 0 357 350 0 6 chr11 129640319 129640502 -19142970 + AluSg/x SINE Alu 119 300 0 241 292 67 11 chr11 129640655 129640744 -19142728 + L2 LINE L2 3169 3262 -10 273 57 0 0 chr11 129640967 129641002 -19142470 + (T)n Simple_repeat Simple_repeat 1 35 0 26 0 0 0 chr11 129641020 129641046 -19142426 + GC_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr11 129641070 129641098 -19142374 + GC_rich Low_complexity Low_complexity 1 28 0 33 0 0 0 chr11 129641150 129641183 -19142289 + AT_rich Low_complexity Low_complexity 1 33 0 38 51 0 0 chr11 129641349 129641408 -19142064 + AT_rich Low_complexity Low_complexity 1 59 0 22 0 0 0 chr11 129641454 129641476 -19141996 + AT_rich Low_complexity Low_complexity 1 22 0 1082 109 25 37 chr11 129641600 129641637 -19141835 - L1M1 LINE L1 -785 5518 5482 2185 106 10 0 chr11 129641637 129641929 -19141543 - AluSg SINE Alu -15 295 1 1082 109 25 37 chr11 129641929 129642074 -19141398 - L1M1 LINE L1 -821 5482 5327 2341 93 3 10 chr11 129642074 129642374 -19141098 + AluSx SINE Alu 1 298 -14 1082 109 25 37 chr11 129642374 129642421 -19141051 - L1M1 LINE L1 -976 5327 5281 308 291 31 24 chr11 129642444 129642571 -19140901 + FRAM SINE Alu 35 162 -4 32 0 0 0 chr11 129642603 129642635 -19140837 + AT_rich Low_complexity Low_complexity 1 32 0 412 228 16 31 chr11 129642636 129642763 -19140709 + AluSq/x SINE Alu 1 125 -178 286 273 45 30 chr11 129643253 129643385 -19140087 + MIR SINE MIR 102 235 -27 1321 226 10 27 chr11 129643467 129643600 -19139872 + AluJb SINE Alu 4 138 -164 2470 71 0 7 chr11 129643600 129643897 -19139575 + AluSx SINE Alu 1 295 -17 1321 226 10 27 chr11 129643897 129644060 -19139412 + AluJb SINE Alu 138 295 -7 611 236 77 91 chr11 129644321 129644393 -19139079 + L1ME4a LINE L1 5712 5784 -337 2281 81 3 3 chr11 129644393 129644688 -19138784 + AluY SINE Alu 1 295 -16 611 236 77 91 chr11 129644688 129645031 -19138441 + L1ME4a LINE L1 5784 6121 0 1512 155 10 59 chr11 129645183 129645486 -19137986 + AluJo SINE Alu 2 289 -23 27 0 0 0 chr11 129645658 129645685 -19137787 + AT_rich Low_complexity Low_complexity 1 27 0 500 281 100 15 chr11 129645708 129645968 -19137504 + L1ME4a LINE L1 5840 6121 0 1770 133 9 82 chr11 129646120 129646450 -19137022 + AluJo SINE Alu 2 307 -5 219 320 94 16 chr11 129646788 129646916 -19136556 - L2 LINE L2 -1040 2274 2137 278 299 127 6 chr11 129647045 129647359 -19136113 - L2 LINE L2 -1230 2084 1733 1930 108 0 0 chr11 129647390 129647641 -19135831 + AluSq SINE Alu 45 295 -18 29 78 0 0 chr11 129647668 129647732 -19135740 + AT_rich Low_complexity Low_complexity 1 64 0 409 153 14 0 chr11 129647875 129647947 -19135525 + AluSp/q SINE Alu 225 297 -16 614 195 16 8 chr11 129648029 129648152 -19135320 - MSTC LTR MaLR -303 125 2 340 93 0 0 chr11 129648173 129648216 -19135256 + Alu SINE Alu 1 43 -260 2108 129 0 7 chr11 129648326 129648635 -19134837 + AluSx SINE Alu 4 310 -2 2552 51 0 7 chr11 129648654 129648947 -19134525 + AluY SINE Alu 1 291 -20 972 0 0 0 chr11 129649049 129649157 -19134315 + (G)n Simple_repeat Simple_repeat 1 108 0 419 281 14 0 chr11 129649240 129649379 -19134093 + AluSg/x SINE Alu 157 297 -15 568 296 11 6 chr11 129649410 129649589 -19133883 + AluSc SINE Alu 130 309 0 600 154 120 26 chr11 129649604 129649809 -19133663 + AluJb SINE Alu 26 298 -14 234 0 0 0 chr11 129649818 129649844 -19133628 + (TAAAA)n Simple_repeat Simple_repeat 4 29 0 407 300 30 16 chr11 129650100 129650278 -19133194 + MIR SINE MIR 18 198 -62 26 0 0 0 chr11 129650630 129650656 -19132816 + AT_rich Low_complexity Low_complexity 1 26 0 2136 124 0 3 chr11 129650656 129650962 -19132510 + AluSx SINE Alu 1 305 -7 1198 235 153 20 chr11 129651062 129651466 -19132006 - L2 LINE L2 -31 3282 2825 275 167 0 0 chr11 129651552 129651600 -19131872 + L1MC4 LINE L1 6656 6703 -1339 2140 125 10 0 chr11 129651716 129652021 -19131451 - AluSx SINE Alu -4 308 1 2017 96 0 0 chr11 129652114 129652365 -19131107 - AluSq SINE Alu -18 295 45 734 336 93 36 chr11 129652396 129653394 -19130078 + L2 LINE L2 1733 2787 -527 1910 163 3 13 chr11 129653438 129653745 -19129727 - AluJb SINE Alu -8 304 1 1436 131 72 0 chr11 129653785 129654007 -19129465 - AluSx SINE Alu -74 238 1 395 224 13 0 chr11 129654098 129654174 -19129298 + L2 LINE L2 3195 3271 -1 275 274 142 9 chr11 129654564 129654670 -19128802 - L2 LINE L2 -2 3270 3151 2187 127 0 0 chr11 129654711 129655010 -19128462 - AluSx SINE Alu -13 299 1 25 0 0 0 chr11 129655011 129655036 -19128436 + AT_rich Low_complexity Low_complexity 1 25 0 407 300 30 16 chr11 129655388 129655566 -19127906 - MIR SINE MIR -62 146 18 234 0 0 0 chr11 129655822 129655848 -19127624 + (TTTTA)n Simple_repeat Simple_repeat 4 29 0 600 154 120 26 chr11 129655858 129656063 -19127409 - AluJb SINE Alu -14 298 26 2000 145 10 3 chr11 129656079 129656389 -19127083 - AluSx SINE Alu 0 312 1 1293 268 81 11 chr11 129656389 129656847 -19126625 + L1MC4a LINE L1 5514 6004 -117 1228 149 36 65 chr11 129656946 129657255 -19126217 - AluSg SINE Alu 0 300 1 2043 71 11 11 chr11 129657265 129657534 -19125938 - AluSx SINE Alu -6 306 38 767 189 8 0 chr11 129657541 129657673 -19125799 - FLAM_C SINE Alu 0 133 1 877 228 12 6 chr11 129657915 129658086 -19125386 - FAM SINE Alu -3 172 1 1686 173 14 0 chr11 129658135 129658424 -19125048 + AluJo SINE Alu 1 293 -19 2295 78 3 0 chr11 129658528 129658811 -19124661 - AluSg SINE Alu -25 285 2 2124 260 85 113 chr11 129658822 129660355 -19123117 + L2 LINE L2 1527 3016 -297 420 171 0 14 chr11 129660385 129660454 -19123018 - MER58 DNA MER1_type -57 284 217 461 202 34 0 chr11 129660454 129660543 -19122929 - Tigger5 DNA MER2_type 0 2323 2232 364 132 19 0 chr11 129660549 129660602 -19122870 - Tigger5 DNA MER2_type -2269 54 1 610 191 143 63 chr11 129660608 129660797 -19122675 - MER58 DNA MER1_type -2208 212 9 956 172 13 0 chr11 129660913 129661070 -19122402 - AluJo SINE Alu -17 295 137 455 181 118 21 chr11 129661082 129661226 -19122246 + L2 LINE L2 3156 3313 0 28 0 0 0 chr11 129661539 129661567 -19121905 + AT_rich Low_complexity Low_complexity 1 28 0 1787 159 40 10 chr11 129661567 129661869 -19121603 - AluJb SINE Alu -1 311 1 617 189 47 16 chr11 129661889 129662016 -19121456 - AluJo SINE Alu -171 131 1 735 143 109 0 chr11 129662099 129662218 -19121254 + FLAM_C SINE Alu 2 133 -10 2219 116 0 3 chr11 129662225 129662517 -19120955 - AluSg SINE Alu -18 292 2 2094 96 43 26 chr11 129663138 129663441 -19120031 - AluSx SINE Alu -4 308 1 310 261 108 57 chr11 129663449 129663707 -19119765 - L2 LINE L2 -243 3070 2793 273 278 86 33 chr11 129663752 129663903 -19119569 - L2 LINE L2 -712 2602 2444 2632 146 64 36 chr11 129663904 129664282 -19119190 - L1MB4 LINE L1 0 6180 5781 2311 88 0 7 chr11 129664282 129664577 -19118895 - AluSc SINE Alu -16 293 1 2632 146 64 36 chr11 129664577 129664727 -19118745 - L1MB4 LINE L1 -399 5781 5637 1699 172 3 17 chr11 129664908 129665070 -19118402 - AluJb SINE Alu -17 295 137 2286 97 0 10 chr11 129665070 129665369 -19118103 - AluSx SINE Alu -16 296 1 1699 172 3 17 chr11 129665369 129665502 -19117970 - AluJb SINE Alu -175 137 4 277 282 46 23 chr11 129665584 129665715 -19117757 - MIR SINE MIR -27 235 102 24 0 0 0 chr11 129667066 129667090 -19116382 + AT_rich Low_complexity Low_complexity 1 24 0 207 139 0 0 chr11 129667239 129667275 -19116197 + (A)n Simple_repeat Simple_repeat 1 36 0 628 257 83 43 chr11 129667327 129667580 -19115892 + MLT1L LTR MaLR 321 583 -32 216 257 0 29 chr11 129667773 129667843 -19115629 - MER5A DNA MER1_type -25 164 97 1483 196 0 6 chr11 129667876 129668188 -19115284 + AluSg SINE Alu 1 310 0 1586 173 17 27 chr11 129668317 129668612 -19114860 + AluJo SINE Alu 1 292 -20 207 0 0 0 chr11 129668639 129668662 -19114810 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 379 151 0 0 chr11 129668662 129668715 -19114757 - AluJ/FRAM SINE Alu -18 284 232 24 0 0 0 chr11 129669104 129669128 -19114344 + AT_rich Low_complexity Low_complexity 1 24 0 2282 95 0 20 chr11 129669261 129669557 -19113915 + AluSg SINE Alu 1 290 -20 264 339 165 0 chr11 129669993 129670114 -19113358 + L2 LINE L2 3127 3267 -5 1652 159 16 26 chr11 129670244 129670553 -19112919 + AluJo SINE Alu 1 306 -6 240 299 75 59 chr11 129670789 129670976 -19112496 - L2 LINE L2 -177 3095 2906 2118 103 0 39 chr11 129671060 129671370 -19112102 + AluSc SINE Alu 1 298 -11 332 273 23 22 chr11 129671371 129671601 -19111871 + L2 LINE L2 1206 1509 -1805 804 60 0 0 chr11 129672875 129672975 -19110497 + L1PA10 LINE L1 5567 5666 -502 198 0 0 0 chr11 129672975 129672997 -19110475 + (CTATT)n Simple_repeat Simple_repeat 3 24 0 3579 79 27 0 chr11 129673188 129673668 -19109804 + L1PA10 LINE L1 5674 6166 -2 1946 152 0 7 chr11 129675619 129675915 -19107557 - AluJb SINE Alu -18 294 1 225 0 0 0 chr11 129676367 129676392 -19107080 + (T)n Simple_repeat Simple_repeat 1 25 0 24 0 0 0 chr11 129676730 129676754 -19106718 + AT_rich Low_complexity Low_complexity 1 24 0 2393 72 3 7 chr11 129676985 129677278 -19106194 - AluY SINE Alu -15 296 5 2204 114 3 7 chr11 129677282 129677579 -19105893 - AluSx SINE Alu -16 296 1 24 0 0 0 chr11 129677711 129677735 -19105737 + AT_rich Low_complexity Low_complexity 1 24 0 380 151 0 0 chr11 129678124 129678177 -19105295 + AluJ/FRAM SINE Alu 232 307 0 208 0 0 0 chr11 129678177 129678200 -19105272 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1631 172 14 27 chr11 129678227 129678523 -19104949 - AluJo SINE Alu -20 292 1 2577 67 0 3 chr11 129678652 129678964 -19104508 - AluY SINE Alu 0 311 1 360 214 17 144 chr11 129679355 129679528 -19103944 - L2 LINE L2 0 3313 3163 222 321 0 0 chr11 129679517 129679570 -19103902 + L2 LINE L2 2906 2958 -356 * 459 161 81 0 chr11 129679607 129679694 -19103778 - FAM SINE Alu -18 167 74 239 335 64 23 chr11 129679715 129679888 -19103584 + L2 LINE L2 2956 3135 -178 399 191 157 0 chr11 129680012 129680101 -19103371 + MLT1L LTR MaLR 106 208 -407 2201 95 3 17 chr11 129680111 129680406 -19103066 + AluSx SINE Alu 22 312 0 3579 79 27 0 chr11 129682324 129682804 -19100668 - L1PA10 LINE L1 -2 6166 5674 198 0 0 0 chr11 129682995 129683017 -19100455 + (AATAG)n Simple_repeat Simple_repeat 3 24 0 804 60 0 0 chr11 129683017 129683117 -19100355 - L1PA10 LINE L1 -502 5666 5567 1280 274 199 9 chr11 129684393 129684624 -19098848 - L2 LINE L2 -1805 1509 1323 2051 110 45 14 chr11 129684624 129684916 -19098556 - AluSx SINE Alu -11 301 1 1280 274 199 9 chr11 129684916 129685367 -19098105 - L2 LINE L2 -1991 1323 696 553 192 29 125 chr11 129685367 129685432 -19098040 - MER5A DNA MER1_type -1 188 118 703 215 16 0 chr11 129685432 129685553 -19097919 + FLAM_A SINE Alu 1 123 -10 553 192 29 125 chr11 129685553 129685695 -19097777 - MER5A DNA MER1_type -71 118 1 575 254 49 22 chr11 129685704 129685796 -19097676 - L2 LINE L2 -2613 701 613 1788 157 38 7 chr11 129685796 129686089 -19097383 + AluJb SINE Alu 1 302 -10 575 254 49 22 chr11 129686089 129686181 -19097291 - L2 LINE L2 -2701 613 512 236 354 35 30 chr11 129686609 129686807 -19096665 + MIR SINE MIR 21 219 -43 2240 79 3 7 chr11 129686961 129687252 -19096220 + AluSg SINE Alu 1 290 -20 1686 173 14 0 chr11 129687350 129687639 -19095833 - AluJo SINE Alu -19 293 1 877 228 12 6 chr11 129687688 129687859 -19095613 + FAM SINE Alu 1 172 -3 1569 181 10 26 chr11 129688101 129688238 -19095234 + AluJo SINE Alu 1 139 -173 2029 112 0 11 chr11 129688238 129688515 -19094957 + AluSx SINE Alu 35 308 -4 1569 181 10 26 chr11 129688515 129688687 -19094785 + AluJo SINE Alu 139 305 -7 1786 142 3 86 chr11 129690277 129690616 -19092856 - AluJb SINE Alu -1 311 1 703 253 129 33 chr11 129691922 129692254 -19091218 - L3b LINE CR1 -118 1465 1102 371 323 24 24 chr11 129693339 129693466 -19090006 + MIR SINE MIR 1 127 -135 2002 138 0 0 chr11 129693513 129693825 -19089647 - AluSx SINE Alu 0 312 1 2364 104 0 3 chr11 129693862 129694171 -19089301 - AluSx SINE Alu -4 308 1 643 282 75 0 chr11 129694876 129695017 -19088455 - MIR SINE MIR -21 241 77 1863 181 7 3 chr11 129695017 129695326 -19088146 + AluJb SINE Alu 1 310 -2 643 282 75 0 chr11 129695326 129695397 -19088075 - MIR SINE MIR -185 77 13 225 209 0 0 chr11 129695868 129695911 -19087561 + A-rich Low_complexity Low_complexity 1 43 0 216 0 0 0 chr11 129695924 129695948 -19087524 + (A)n Simple_repeat Simple_repeat 1 24 0 26 0 0 0 chr11 129696040 129696066 -19087406 + AT_rich Low_complexity Low_complexity 1 26 0 201 306 0 0 chr11 129696106 129696155 -19087317 + T-rich Low_complexity Low_complexity 1 49 0 225 0 0 0 chr11 129696155 129696180 -19087292 + (A)n Simple_repeat Simple_repeat 1 25 0 201 74 0 0 chr11 129696318 129696345 -19087127 + (T)n Simple_repeat Simple_repeat 1 27 0 205 119 0 153 chr11 129696379 129696438 -19087034 + (A)n Simple_repeat Simple_repeat 1 50 0 32 0 0 0 chr11 129696443 129696475 -19086997 + AT_rich Low_complexity Low_complexity 1 32 0 1269 40 9 42 chr11 129696588 129696937 -19086535 - SVA Other Other -520 866 635 5757 73 27 55 chr11 129696967 129697820 -19085652 - SVA Other Other -520 866 38 276 30 0 0 chr11 129697825 129697858 -19085614 + (GGGAGA)n Simple_repeat Simple_repeat 1 33 0 585 175 0 0 chr11 129697861 129697958 -19085514 - AluJo/FRAM SINE Alu -17 295 199 2150 120 21 0 chr11 129697960 129698251 -19085221 - AluSx SINE Alu -11 301 5 592 151 0 0 chr11 129698257 129698350 -19085122 - MLT1A2 LTR MaLR -281 93 1 785 219 98 6 chr11 129698351 129698624 -19084848 + L1M4 LINE L1 3351 3657 -2489 1820 144 84 12 chr11 129698636 129698956 -19084516 + MLT2D LTR ERVL 6 348 -66 2070 153 21 15 chr11 129698987 129699321 -19084151 + MER2 DNA MER2_type 1 336 -9 315 190 0 0 chr11 129699344 129699402 -19084070 + L1MC4 LINE L1 6645 6702 -1340 474 49 0 0 chr11 129699459 129699520 -19083952 + (CA)n Simple_repeat Simple_repeat 2 62 0 274 129 0 16 chr11 129699520 129699572 -19083900 + MLT2B1 LTR ERVL 349 512 -1 2985 198 50 22 chr11 129699575 129700270 -19083202 + L1M4 LINE L1 3669 4477 -1669 1843 169 10 10 chr11 129700270 129700577 -19082895 + AluJo SINE Alu 1 307 -5 2985 198 50 22 chr11 129700577 129700798 -19082674 + L1M4 LINE L1 4477 4690 -1456 2125 123 7 0 chr11 129700813 129701105 -19082367 + AluSx SINE Alu 1 294 -18 420 223 23 46 chr11 129701113 129701264 -19082208 + AluJ/FLAM SINE Alu 1 75 -227 622 193 0 0 chr11 129701306 129701415 -19082057 - AluJo SINE Alu -86 226 118 477 59 52 0 chr11 129701426 129701508 -19081964 + HERVL LTR ERVL 5421 5496 -158 282 0 0 0 chr11 129701515 129701552 -19081920 - L1PA3 LINE L1 -3 6152 6116 1970 136 3 17 chr11 129701552 129701853 -19081619 - AluJb SINE Alu -15 297 1 328 103 35 0 chr11 129701853 129701911 -19081561 + MER5B DNA MER1_type 114 173 -5 2270 97 0 0 chr11 129702467 129702785 -19080687 - AluSc SINE Alu 0 318 1 1839 163 3 14 chr11 129702840 129703135 -19080337 - AluJo SINE Alu -20 292 1 2112 139 3 0 chr11 129703194 129703488 -19079984 + AluSx SINE Alu 1 295 -17 327 25 0 0 chr11 129704797 129704837 -19078635 + (CA)n Simple_repeat Simple_repeat 2 41 0 351 274 63 0 chr11 129706761 129706856 -19076616 + MER81 DNA DNA 4 104 -10 1887 170 3 0 chr11 129707263 129707557 -19075915 - AluJb SINE Alu -16 296 2 287 260 156 0 chr11 129708450 129708546 -19074926 + L2 LINE L2 3151 3261 -11 2408 87 0 10 chr11 129708700 129709010 -19074462 + AluSg SINE Alu 3 309 -1 189 0 0 0 chr11 129709448 129709469 -19074003 + (GCTG)n Simple_repeat Simple_repeat 1 21 0 398 328 73 42 chr11 129710192 129710769 -19072703 - L2 LINE L2 -1105 2209 1615 243 293 22 72 chr11 129711084 129711239 -19072233 + MIR3 SINE MIR 3 149 -59 2327 106 0 10 chr11 129711239 129711550 -19071922 + AluSx SINE Alu 1 308 -4 243 293 22 72 chr11 129711550 129711575 -19071897 + MIR3 SINE MIR 149 174 -34 1776 153 39 26 chr11 129711621 129711928 -19071544 + AluJo SINE Alu 1 311 -1 233 218 109 0 chr11 129712093 129712148 -19071324 - L2 LINE L2 -3 3310 3250 198 330 183 11 chr11 129712211 129712402 -19071070 + L2 LINE L2 2830 3053 -219 186 43 0 0 chr11 129712704 129712727 -19070745 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1682 141 48 7 chr11 129712730 129713000 -19070472 - AluJb SINE Alu -23 289 9 1046 295 70 68 chr11 129713229 129713940 -19069532 - MER21B LTR ERV1 -149 714 2 216 250 0 19 chr11 129714382 129714434 -19069038 + MER5A DNA MER1_type 8 58 -131 377 209 209 7 chr11 129714607 129714746 -19068726 + MER5A DNA MER1_type 22 188 -1 2461 67 3 0 chr11 129715997 129716294 -19067178 + AluY SINE Alu 4 301 -10 1510 231 43 5 chr11 129716312 129716684 -19066788 - L1ME3A LINE L1 -27 6143 5758 2139 123 0 10 chr11 129717030 129717331 -19066141 + AluSx SINE Alu 13 310 -2 990 179 41 50 chr11 129717847 129718065 -19065407 - MER20 DNA MER1_type -2 217 2 1786 142 3 86 chr11 129719163 129719502 -19063970 - AluJb SINE Alu -1 311 1 703 253 129 33 chr11 129720808 129721140 -19062332 - L3b LINE CR1 -118 1465 1102 371 323 24 24 chr11 129722225 129722352 -19061120 + MIR SINE MIR 1 127 -135 2002 138 0 0 chr11 129722399 129722711 -19060761 - AluSx SINE Alu 0 312 1 2364 104 0 3 chr11 129722748 129723057 -19060415 - AluSx SINE Alu -4 308 1 643 282 75 0 chr11 129723762 129723903 -19059569 - MIR SINE MIR -21 241 77 1863 181 7 3 chr11 129723903 129724212 -19059260 + AluJb SINE Alu 1 310 -2 643 282 75 0 chr11 129724212 129724283 -19059189 - MIR SINE MIR -185 77 13 522 146 104 0 chr11 129727510 129727606 -19055866 + FLAM_A SINE Alu 26 131 -11 380 301 105 7 chr11 129727731 129727874 -19055598 - MIR3 SINE MIR -48 160 4 22 0 0 0 chr11 129727974 129727996 -19055476 + AT_rich Low_complexity Low_complexity 1 22 0 237 65 0 0 chr11 129729587 129729618 -19053854 + (T)n Simple_repeat Simple_repeat 1 31 0 937 258 27 14 chr11 129732270 129732491 -19050981 - MIR SINE MIR -37 225 2 2401 112 0 0 chr11 129735586 129735898 -19047574 - AluSx SINE Alu 0 312 1 2462 83 3 0 chr11 129735909 129736209 -19047263 - AluSp SINE Alu -8 305 5 867 112 15 22 chr11 129736216 129736350 -19047122 - FLAM_C SINE Alu 0 133 1 429 305 57 17 chr11 129736355 129736532 -19046940 - L1M4 LINE L1 -844 5302 5119 2317 87 3 17 chr11 129736535 129736834 -19046638 - AluSc SINE Alu -14 295 1 896 81 81 0 chr11 129736834 129736957 -19046515 - AluSc SINE Alu -176 133 1 594 121 55 0 chr11 129736957 129737048 -19046424 - FLAM_C SINE Alu -8 135 40 2132 125 0 20 chr11 129737060 129737365 -19046107 - AluSx SINE Alu -13 299 1 860 135 14 14 chr11 129737367 129737508 -19045964 - FLAM_C SINE Alu -2 141 1 429 305 57 17 chr11 129737513 129737690 -19045782 - L1M4 LINE L1 -844 5302 5119 2541 70 0 0 chr11 129737693 129737991 -19045481 - AluY SINE Alu -13 298 1 1868 148 59 0 chr11 129738047 129738371 -19045101 - L1MB7 LINE L1 -1 6183 5841 1118 71 0 0 chr11 129738919 129739060 -19044412 + AluY SINE Alu 156 296 -15 2364 110 0 0 chr11 129739133 129739434 -19044038 - AluSx SINE Alu -11 301 1 859 179 6 6 chr11 129739466 129739645 -19043827 + L1 LINE L1 4859 5037 -1109 610 101 146 0 chr11 129739645 129739734 -19043738 - AluSq/x SINE Alu -210 103 2 323 257 81 0 chr11 129739750 129739824 -19043648 - L2 LINE L2 -2127 1187 1108 286 222 162 10 chr11 129740010 129740109 -19043363 - MIR SINE MIR -102 160 47 210 208 21 21 chr11 129740226 129740274 -19043198 - L2 LINE L2 -4 3309 3262 305 308 169 17 chr11 129741112 129741200 -19042272 + L2 LINE L2 3074 3147 -125 1093 212 44 16 chr11 129741200 129741450 -19042022 + MIR SINE MIR 2 258 -4 305 308 169 17 chr11 129741450 129741533 -19041939 + L2 LINE L2 3147 3271 -1 186 300 33 75 chr11 129741540 129741660 -19041812 - MIR SINE MIR -70 192 78 266 277 62 54 chr11 129742179 129742291 -19041181 - MIR SINE MIR -148 114 2 225 108 0 0 chr11 129744885 129744922 -19038550 + (T)n Simple_repeat Simple_repeat 1 37 0 21 0 0 0 chr11 129746820 129746841 -19036631 + AT_rich Low_complexity Low_complexity 1 21 0 2344 90 0 0 chr11 129749859 129750148 -19033324 - AluSg SINE Alu -21 289 1 244 281 47 31 chr11 129751010 129751138 -19032334 + L1ME LINE L1 5772 5901 -220 368 287 52 0 chr11 129751185 129751300 -19032172 - MIR SINE MIR -58 204 84 213 39 0 0 chr11 129751414 129751440 -19032032 + (T)n Simple_repeat Simple_repeat 1 26 0 25 0 0 0 chr11 129751458 129751483 -19031989 + GC_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr11 129751561 129751583 -19031889 + GC_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr11 129751583 129751611 -19031861 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr11 129751721 129751749 -19031723 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr11 129751749 129751775 -19031697 + GC_rich Low_complexity Low_complexity 1 26 0 198 0 0 0 chr11 129751954 129751976 -19031496 + (T)n Simple_repeat Simple_repeat 1 22 0 183 233 33 67 chr11 129752027 129752087 -19031385 - MIR SINE MIR -60 148 91 300 336 110 14 chr11 129752249 129752395 -19031077 + MIR3 SINE MIR 43 202 -6 234 0 0 0 chr11 129752970 129752996 -19030476 + (CA)n Simple_repeat Simple_repeat 2 27 0 2269 105 3 0 chr11 129753130 129753435 -19030037 + AluY SINE Alu 1 306 -5 1109 152 0 0 chr11 129753491 129753655 -19029817 + FAM SINE Alu 1 42 -7 409 302 50 56 chr11 129753822 129754001 -19029471 + L1MC4 LINE L1 7864 8041 -1 193 271 73 62 chr11 129755117 129755213 -19028259 + L2 LINE L2 3133 3229 -43 258 292 106 43 chr11 129756381 129756542 -19026930 + MER5B DNA MER1_type 1 171 -7 1519 101 135 22 chr11 129756767 129757054 -19026418 + AluSp SINE Alu 1 317 0 693 217 46 32 chr11 129757119 129757336 -19026136 - L1MB7 LINE L1 0 6184 5965 199 363 0 24 chr11 129757356 129757499 -19025973 - MIR SINE MIR -54 154 17 25 0 0 0 chr11 129758365 129758390 -19025082 + AT_rich Low_complexity Low_complexity 1 25 0 2169 102 0 11 chr11 129760128 129760411 -19023061 + AluSx SINE Alu 12 291 -21 491 283 87 0 chr11 129760461 129760634 -19022838 + L2 LINE L2 3042 3229 -84 294 271 73 62 chr11 129760726 129760918 -19022554 + L1MC4a LINE L1 5754 5947 -1861 2059 127 24 96 chr11 129761189 129761343 -19022129 - MLT1B LTR MaLR 0 390 227 1760 144 40 4 chr11 129761343 129761620 -19021852 - AluJb SINE Alu -21 291 5 2059 127 24 96 chr11 129761620 129761884 -19021588 - MLT1B LTR MaLR -163 227 2 245 169 286 0 chr11 129763588 129763665 -19019807 - L2 LINE L2 -690 2624 2526 279 246 0 0 chr11 129763666 129763731 -19019741 - LTR33A LTR ERVL 0 523 459 1898 142 10 14 chr11 129763731 129764026 -19019446 + AluSg SINE Alu 1 294 -16 2250 94 10 3 chr11 129764049 129764337 -19019135 + AluSq SINE Alu 1 290 -23 1695 116 0 13 chr11 129764644 129764876 -19018596 - AluSc SINE Alu -80 229 1 2212 130 0 0 chr11 129764895 129765203 -19018269 - AluSx SINE Alu -2 310 3 864 140 0 49 chr11 129765206 129765349 -19018123 - AluJo SINE Alu -176 136 1 2078 144 26 9 chr11 129765369 129765716 -19017756 + MSTC LTR MaLR 1 353 -75 973 99 270 69 chr11 129765716 129765780 -19017692 + L1PA16 LINE L1 5877 5927 -239 1993 151 7 0 chr11 129765780 129766079 -19017393 + AluJb SINE Alu 1 301 -11 973 99 270 69 chr11 129766079 129766247 -19017225 + L1PA16 LINE L1 5927 6156 -10 313 101 72 0 chr11 129766255 129766324 -19017148 + MSTC LTR MaLR 355 428 0 1825 122 6 35 chr11 129766349 129766668 -19016804 - AluY SINE Alu -1 310 1 2339 99 0 3 chr11 129767951 129768245 -19015227 + AluSx SINE Alu 1 293 -19 27 0 0 0 chr11 129768316 129768343 -19015129 + AT_rich Low_complexity Low_complexity 1 27 0 1931 149 0 36 chr11 129768343 129768521 -19014951 - AluJo SINE Alu -21 291 127 2604 47 0 7 chr11 129768521 129768819 -19014653 + AluY SINE Alu 1 296 -15 1931 149 0 36 chr11 129768819 129768942 -19014530 - AluJo SINE Alu -185 127 1 207 69 0 0 chr11 129769279 129769308 -19014164 + (CAT)n Simple_repeat Simple_repeat 2 30 0 2299 97 0 10 chr11 129770626 129770925 -19012547 + AluSg SINE Alu 1 296 -14 2154 118 16 7 chr11 129770945 129771249 -19012223 + AluSx SINE Alu 1 307 -5 288 156 0 0 chr11 129771251 129771296 -19012176 + Alu SINE Alu 1 45 -254 1474 71 0 6 chr11 129771296 129771479 -19011993 - AluSq SINE Alu -131 182 1 258 292 106 43 chr11 129771704 129771865 -19011607 - MER5B DNA MER1_type -7 171 1 202 167 28 0 chr11 129772303 129772339 -19011133 + MIR SINE MIR 37 73 -135 478 125 14 0 chr11 129772442 129772514 -19010958 + AluJ/FLAM SINE Alu 2 74 -238 358 267 46 23 chr11 129773073 129773204 -19010268 + MIR SINE MIR 102 235 -27 968 124 0 0 chr11 129773286 129773415 -19010057 + AluJb SINE Alu 4 132 -180 1810 154 7 10 chr11 129773418 129773716 -19009756 + AluSx SINE Alu 1 297 -15 1967 157 10 0 chr11 129774843 129775136 -19008336 + AluJo SINE Alu 1 296 -16 1453 153 73 59 chr11 129775136 129775422 -19008050 + AluJb SINE Alu 1 291 -21 2206 106 3 7 chr11 129775497 129775799 -19007673 + AluSp SINE Alu 5 305 -8 1040 183 0 0 chr11 129776038 129776224 -19007248 + AluSg/x SINE Alu 119 304 -6 968 290 20 0 chr11 129776274 129776519 -19006953 - MIR SINE MIR -8 254 5 21 0 0 0 chr11 129776587 129776608 -19006864 + AT_rich Low_complexity Low_complexity 1 21 0 737 163 8 8 chr11 129776663 129776786 -19006686 - FLAM_C SINE Alu -18 125 3 1742 160 0 10 chr11 129776807 129777101 -19006371 - AluSc SINE Alu -18 291 1 382 238 317 12 chr11 129777110 129777274 -19006198 + MIR SINE MIR 48 261 -1 249 368 38 0 chr11 129777414 129777520 -19005952 + MIR SINE MIR 34 143 -65 2677 198 65 15 chr11 129777563 129777655 -19005817 - L1MB7 LINE L1 -23 6161 6075 610 222 8 0 chr11 129777655 129777781 -19005691 - FLAM_A SINE Alu -6 127 1 2677 198 65 15 chr11 129777781 129778468 -19005004 - L1MB7 LINE L1 -109 6075 5293 288 112 3 129 chr11 129778488 129778549 -19004923 - L1MB7 LINE L1 -838 5308 5281 2335 84 7 7 chr11 129778549 129778847 -19004625 + AluSx SINE Alu 1 298 -14 288 112 3 129 chr11 129778847 129778878 -19004594 - L1MB7 LINE L1 -865 5281 5248 2054 119 7 17 chr11 129782544 129782846 -19000626 + AluSg SINE Alu 1 299 -11 751 143 0 0 chr11 129782854 129782959 -19000513 + FLAM_C SINE Alu 2 106 -37 1758 97 4 23 chr11 129782989 129783247 -19000225 + L1M1 LINE L1 5321 5573 -732 2132 105 7 10 chr11 129783271 129783565 -18999907 + AluSx SINE Alu 1 293 -19 1964 141 7 0 chr11 129783574 129783873 -18999599 + AluJo SINE Alu 2 302 -10 1936 157 10 0 chr11 129784695 129784988 -18998484 + AluJo SINE Alu 1 296 -16 1258 171 73 63 chr11 129784990 129785276 -18998196 + AluJo SINE Alu 3 291 -21 1931 139 10 3 chr11 129785345 129785647 -18997825 + AluSp SINE Alu 1 304 -9 514 243 105 99 chr11 129785647 129785980 -18997492 - MLT1I LTR MaLR -52 357 23 242 257 95 0 chr11 129786171 129786245 -18997227 - L2 LINE L2 -924 2390 2310 961 212 18 0 chr11 129786314 129786531 -18996941 - MIR SINE MIR -11 251 31 211 170 0 38 chr11 129786582 129786635 -18996837 + GA-rich Low_complexity Low_complexity 1 51 0 277 221 13 26 chr11 129787329 129787406 -18996066 - MIR SINE MIR -30 232 157 184 167 191 0 chr11 129787537 129787579 -18995893 - L2 LINE L2 0 3313 3264 22 0 0 0 chr11 129788268 129788290 -18995182 + AT_rich Low_complexity Low_complexity 1 22 0 239 292 266 0 chr11 129788311 129788465 -18995007 - L1MC4a LINE L1 -1773 6035 5841 240 111 0 0 chr11 129788540 129788576 -18994896 + (T)n Simple_repeat Simple_repeat 1 36 0 264 122 0 0 chr11 129790329 129790370 -18993102 + (A)n Simple_repeat Simple_repeat 1 41 0 1239 111 9 62 chr11 129790915 129791141 -18992331 - AluSx SINE Alu -98 214 1 376 148 43 5 chr11 129791423 129791540 -18991932 + MER30B DNA MER1_type 2 183 -47 2302 105 0 7 chr11 129791582 129791887 -18991585 - AluSx SINE Alu -9 303 1 856 180 27 7 chr11 129791962 129792112 -18991360 - FRAM SINE Alu -26 150 1 2321 87 3 13 chr11 129792147 129792447 -18991025 - AluSx SINE Alu -15 297 1 1662 167 7 20 chr11 129792475 129792768 -18990704 + AluJb SINE Alu 1 289 -23 1835 152 0 40 chr11 129793039 129793163 -18990309 + AluJo SINE Alu 1 128 -184 2563 47 0 10 chr11 129793163 129793462 -18990010 - AluY SINE Alu -15 296 1 1835 152 0 40 chr11 129793462 129793640 -18989832 + AluJo SINE Alu 128 291 -21 27 0 0 0 chr11 129793640 129793667 -18989805 + AT_rich Low_complexity Low_complexity 1 27 0 2350 95 0 3 chr11 129793738 129794032 -18989440 - AluSx SINE Alu -19 293 1 2404 62 0 23 chr11 129795315 129795619 -18987853 + AluY SINE Alu 1 297 -14 539 178 37 0 chr11 129795648 129795783 -18987689 - L1MB7 LINE L1 -1 6183 6044 1188 194 0 4 chr11 129795912 129796149 -18987323 - L1 LINE L1 -1052 5094 4859 2094 147 0 0 chr11 129796181 129796487 -18986985 + AluSx SINE Alu 1 306 -6 875 290 20 0 chr11 129796537 129796782 -18986690 - MIR SINE MIR -8 254 5 21 0 0 0 chr11 129796850 129796871 -18986601 + AT_rich Low_complexity Low_complexity 1 21 0 734 169 0 8 chr11 129796926 129797050 -18986422 - FLAM_C SINE Alu -18 125 3 2133 108 7 7 chr11 129797071 129797366 -18986106 - AluSp SINE Alu -18 295 1 2475 65 3 0 chr11 129797376 129797668 -18985804 - AluSc SINE Alu -16 293 1 254 290 125 34 chr11 129797999 129798237 -18985235 + L2 LINE L2 2734 2993 -279 2481 88 0 0 chr11 129798311 129798617 -18984855 - AluSg SINE Alu -4 306 1 201 74 0 0 chr11 129798894 129798921 -18984551 + (A)n Simple_repeat Simple_repeat 1 27 0 249 57 0 0 chr11 129800583 129800618 -18982854 + (TA)n Simple_repeat Simple_repeat 1 35 0 2590 62 0 0 chr11 129801360 129801668 -18981804 - AluY SINE Alu -3 308 1 1667 138 33 25 chr11 129801668 129801943 -18981529 - AluJo SINE Alu -15 297 21 216 0 0 0 chr11 129802616 129802640 -18980832 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 23 0 0 0 chr11 129803360 129803383 -18980089 + AT_rich Low_complexity Low_complexity 1 23 0 1897 157 3 0 chr11 129803387 129803673 -18979799 + AluSx SINE Alu 1 287 -25 2438 188 126 58 chr11 129804003 129804728 -18978744 + L1MC3 LINE L1 6324 7097 -688 261 235 31 102 chr11 129804728 129804826 -18978646 + MLT1F1 LTR MaLR 35 125 -442 1514 183 67 97 chr11 129804826 129805257 -18978215 + L1MD3 LINE L1 7406 7823 -172 21 0 0 0 chr11 129805363 129805384 -18978088 + AT_rich Low_complexity Low_complexity 1 21 0 2129 109 13 13 chr11 129805725 129806036 -18977436 - AluSx SINE Alu 0 312 2 2182 108 0 0 chr11 129806043 129806329 -18977143 - AluSx SINE Alu -18 294 9 2109 109 10 22 chr11 129806556 129806867 -18976605 + AluJb SINE Alu 6 312 0 2006 104 43 0 chr11 129808432 129808711 -18974761 - AluSx SINE Alu -21 291 1 184 237 0 0 chr11 129808930 129808968 -18974504 - MIR SINE MIR -172 90 53 620 213 0 16 chr11 129809506 129809633 -18973839 - FLAM_A SINE Alu -6 127 3 223 338 175 36 chr11 129809710 129810127 -18973345 - L2 LINE L2 -1857 1457 983 423 92 0 0 chr11 129812984 129813049 -18970423 + (A)n Simple_repeat Simple_repeat 1 65 0 1948 118 9 67 chr11 129813428 129813758 -18969714 - AluSx SINE Alu -1 311 1 376 158 53 5 chr11 129814040 129814156 -18969316 + MER30B DNA MER1_type 2 183 -47 2195 112 0 10 chr11 129814201 129814505 -18968967 - AluSx SINE Alu -11 301 1 955 159 40 28 chr11 129814576 129814752 -18968720 - AluJo SINE Alu -22 290 113 2339 90 3 10 chr11 129814762 129815061 -18968411 - AluSx SINE Alu -15 297 1 1662 167 7 20 chr11 129815089 129815382 -18968090 + AluJb SINE Alu 1 289 -23 2059 136 3 3 chr11 129815654 129815949 -18967523 + AluSx SINE Alu 1 295 -17 1523 128 0 0 chr11 129815951 129816154 -18967318 + AluJb SINE Alu 1 203 -109 2034 92 4 4 chr11 129816154 129816415 -18967057 - AluSx SINE Alu -51 261 1 2459 80 0 0 chr11 129817734 129818035 -18965437 - AluY SINE Alu -10 301 1 2415 80 23 3 chr11 129818041 129818341 -18965131 - AluSx SINE Alu -6 306 1 763 163 7 50 chr11 129818342 129818483 -18964989 - AluSq/x SINE Alu -176 136 2 1718 120 0 0 chr11 129818534 129818767 -18964705 + AluSg/x SINE Alu 65 297 -13 275 274 142 9 chr11 129818808 129818914 -18964558 + L2 LINE L2 3151 3270 -2 395 224 13 0 chr11 129819304 129819380 -18964092 - L2 LINE L2 -1 3271 3195 1436 131 72 0 chr11 129819471 129819693 -18963779 + AluSx SINE Alu 1 238 -74 1816 166 7 16 chr11 129819733 129820040 -18963432 + AluJb SINE Alu 1 304 -8 734 336 93 36 chr11 129820084 129821082 -18962390 - L2 LINE L2 -527 2787 1733 2017 96 0 0 chr11 129821113 129821364 -18962108 + AluSq SINE Alu 45 295 -18 2140 125 10 0 chr11 129821457 129821762 -18961710 + AluSx SINE Alu 1 308 -4 275 167 0 0 chr11 129821878 129821926 -18961546 - L1MC4 LINE L1 -1339 6703 6656 1198 235 153 20 chr11 129822012 129822416 -18961056 + L2 LINE L2 2825 3282 -31 1338 115 0 0 chr11 129822516 129822698 -18960774 - AluSg/x SINE Alu -7 303 122 291 54 0 0 chr11 129822698 129822735 -18960737 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 2067 116 0 27 chr11 129822736 129823030 -18960442 - AluSx SINE Alu -26 286 1 441 272 107 0 chr11 129823035 129823204 -18960268 + MIR SINE MIR 65 251 -11 2499 64 7 0 chr11 129823575 129823870 -18959602 - AluSc SINE Alu -12 297 1 1020 256 166 18 chr11 129823929 129824391 -18959081 - L2 LINE L2 -107 3206 2643 2329 96 7 0 chr11 129824391 129824692 -18958780 + AluSg SINE Alu 1 303 -7 1020 256 166 18 chr11 129824692 129824837 -18958635 - L2 LINE L2 -670 2643 2521 191 190 0 52 chr11 129824901 129824959 -18958513 - L2 LINE L2 -802 2512 2458 1881 104 59 21 chr11 129825118 129825405 -18958067 - AluSx SINE Alu -14 298 1 21 0 0 0 chr11 129825409 129825430 -18958042 + AT_rich Low_complexity Low_complexity 1 21 0 1783 162 3 27 chr11 129825432 129825567 -18957905 + AluSx SINE Alu 1 138 -174 2202 85 11 11 chr11 129825567 129825887 -18957585 + AluSx SINE Alu 1 320 0 1783 162 3 27 chr11 129825887 129826046 -18957426 + AluSx SINE Alu 138 289 -23 205 98 49 0 chr11 129826046 129826087 -18957385 + (TA)n Simple_repeat Simple_repeat 1 43 0 24 0 0 0 chr11 129826087 129826111 -18957361 + AT_rich Low_complexity Low_complexity 1 24 0 2290 81 3 7 chr11 129826111 129826395 -18957077 + AluSx SINE Alu 1 283 -29 181 264 19 0 chr11 129826411 129826464 -18957008 + L2 LINE L2 1767 1820 -1494 29 0 0 0 chr11 129826566 129826595 -18956877 + AT_rich Low_complexity Low_complexity 1 29 0 766 167 0 0 chr11 129826762 129826882 -18956590 - FLAM_A SINE Alu -12 121 2 329 251 93 54 chr11 129827368 129827627 -18955845 - L1ME4a LINE L1 -18 6103 5835 673 152 254 18 chr11 129827633 129827798 -18955674 - MER3 DNA MER1_type 0 209 6 764 111 8 26 chr11 129827827 129827944 -18955528 - FLAM_C SINE Alu -17 116 2 875 204 13 0 chr11 129827972 129828129 -18955343 - AluJb SINE Alu -16 296 138 294 260 108 39 chr11 129828137 129828287 -18955185 - L1ME4a LINE L1 -296 5825 5656 2260 121 0 0 chr11 129828287 129828584 -18954888 - AluSg SINE Alu -13 297 1 294 260 108 39 chr11 129828584 129828637 -18954835 - L1ME4a LINE L1 -465 5656 5608 21 0 0 0 chr11 129828641 129828662 -18954810 + AT_rich Low_complexity Low_complexity 1 21 0 956 231 197 20 chr11 129828754 129829160 -18954312 - HAL1 LINE L1 -309 2198 1721 1199 252 115 26 chr11 129829167 129829706 -18953766 - HAL1 LINE L1 -971 1536 950 295 246 0 0 chr11 129829723 129829788 -18953684 - HAL1 LINE L1 -1618 889 825 622 184 203 0 chr11 129829799 129829957 -18953515 - MER33 DNA MER1_type -134 190 1 204 261 0 0 chr11 129830036 129830082 -18953390 + (TA)n Simple_repeat Simple_repeat 2 47 0 189 0 0 0 chr11 129831985 129832006 -18951466 + (T)n Simple_repeat Simple_repeat 1 21 0 218 326 211 0 chr11 129832850 129832959 -18950513 + MIR SINE MIR 20 132 -76 211 162 270 0 chr11 129833036 129833120 -18950352 - MIR SINE MIR -44 218 106 1814 156 20 7 chr11 129833341 129833643 -18949829 - AluSx SINE Alu -6 306 1 4325 27 0 4 chr11 129833837 129834390 -18949082 + SVA Other Other 913 1463 0 1480 136 97 4 chr11 129834398 129834655 -18948817 + MLT1A1 LTR MaLR 85 365 0 1881 149 10 0 chr11 129834665 129834967 -18948505 - AluSx SINE Alu -7 305 1 395 196 34 155 chr11 129834967 129835252 -18948220 - L1M4 LINE L1 -2802 3344 3095 3096 101 30 0 chr11 129835324 129835759 -18947713 - L1PA13 LINE L1 -7 6156 5709 186 43 0 0 chr11 129835770 129835793 -18947679 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1994 200 87 33 chr11 129835797 129836070 -18947402 - L1M4 LINE L1 -3033 3113 2856 2214 259 49 25 chr11 129836070 129836679 -18946793 - MLT1E2 LTR MaLR 0 626 3 1994 200 87 33 chr11 129836679 129836904 -18946568 - L1M4 LINE L1 -3290 2856 2575 2012 191 21 0 chr11 129836904 129837239 -18946233 + MER2 DNA MER2_type 3 344 0 1994 200 87 33 chr11 129837239 129837338 -18946134 - L1M4 LINE L1 -3571 2575 2483 2122 137 0 0 chr11 129837339 129837639 -18945833 - AluSq SINE Alu -13 300 1 192 253 81 35 chr11 129837857 129837944 -18945528 + MIR SINE MIR 60 150 -112 23 0 0 0 chr11 129837944 129837967 -18945505 + AT_rich Low_complexity Low_complexity 1 23 0 217 302 0 0 chr11 129838028 129838081 -18945391 + MIR SINE MIR 204 256 -6 1419 242 91 64 chr11 129839895 129840361 -18943111 + MLT1F LTR MaLR 1 484 -58 1857 173 10 0 chr11 129840361 129840650 -18942822 - AluJo SINE Alu -20 292 1 1419 242 91 64 chr11 129840650 129840711 -18942761 + MLT1F LTR MaLR 484 542 0 519 17 0 0 chr11 129840774 129840834 -18942638 + (CA)n Simple_repeat Simple_repeat 2 61 0 2216 96 0 19 chr11 129842673 129842985 -18940487 - AluSc SINE Alu -3 306 1 2234 110 0 3 chr11 129843021 129843321 -18940151 - AluJb SINE Alu -13 299 1 1987 130 3 3 chr11 129843443 129843728 -18939744 + AluSq SINE Alu 1 285 -28 1528 183 3 30 chr11 129843886 129844186 -18939286 - AluJo SINE Alu -20 292 1 389 186 65 65 chr11 129844685 129844809 -18938663 + L1ME4a LINE L1 5953 6076 -45 513 355 113 20 chr11 129844827 129845173 -18938299 + L2 LINE L2 2827 3204 -68 2343 87 0 7 chr11 129845296 129845596 -18937876 + AluSc SINE Alu 1 298 -11 1017 217 28 9 chr11 129846281 129846493 -18936979 - MER58A DNA MER1_type 0 224 9 1805 161 0 23 chr11 129846829 129847128 -18936344 - AluJb SINE Alu -18 294 3 1155 159 0 6 chr11 129847953 129848129 -18935343 - FAM SINE Alu 0 175 1 2189 99 18 0 chr11 129848696 129848978 -18934494 - AluSx SINE Alu -25 287 1 233 288 17 0 chr11 129849646 129849705 -18933767 + L2 LINE L2 3247 3306 -7 180 314 44 131 chr11 129849840 129849902 -18933570 - L2 LINE L2 -1 3271 3205 2428 147 44 42 chr11 129849902 129850317 -18933155 + MSTB2 LTR MaLR 1 419 -38 1664 172 20 14 chr11 129850317 129850613 -18932859 - AluJo SINE Alu -14 298 1 2428 147 44 42 chr11 129850613 129850653 -18932819 + MSTB2 LTR MaLR 419 457 0 180 314 44 131 chr11 129850653 129850846 -18932626 - L2 LINE L2 -67 3205 3053 2342 97 3 0 chr11 129850846 129851145 -18932327 - AluY SINE Alu -11 300 1 180 314 44 131 chr11 129851145 129851248 -18932224 - L2 LINE L2 -219 3053 2943 728 280 94 56 chr11 129852832 129853160 -18930312 - L1MC4a LINE L1 -297 5824 5550 2089 72 79 7 chr11 129853160 129853438 -18930034 + AluSc SINE Alu 2 299 -10 728 280 94 56 chr11 129853438 129853712 -18929760 - L1MC4a LINE L1 -571 5550 5288 2220 97 14 0 chr11 129853746 129854035 -18929437 - AluSx SINE Alu -19 293 1 1033 96 0 0 chr11 129854035 129854170 -18929302 - AluSq/x SINE Alu -178 135 1 23 33 0 0 chr11 129854881 129854911 -18928561 + AT_rich Low_complexity Low_complexity 1 30 0 2192 106 3 26 chr11 129857039 129857350 -18926122 + AluSx SINE Alu 1 304 -8 21 0 0 0 chr11 129857385 129857406 -18926066 + AT_rich Low_complexity Low_complexity 1 21 0 1036 92 0 0 chr11 129857563 129857694 -18925778 - AluSq/x SINE Alu -181 131 1 696 282 64 43 chr11 129858022 129858435 -18925037 + MLT1K LTR MaLR 110 588 0 1973 116 0 14 chr11 129858530 129858807 -18924665 + AluSg SINE Alu 1 273 -37 180 0 0 0 chr11 129858811 129858831 -18924641 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 183 133 0 67 chr11 129859294 129859339 -18924133 + L2 LINE L2 1676 1717 -1597 1706 100 52 87 chr11 129859635 129859945 -18923527 + AluSx SINE Alu 2 300 -12 213 121 0 0 chr11 129859946 129859979 -18923493 + (CA)n Simple_repeat Simple_repeat 2 34 0 25 83 0 0 chr11 129860391 129860451 -18923021 + AT_rich Low_complexity Low_complexity 1 60 0 243 214 107 0 chr11 129861836 129861892 -18921580 + MIR SINE MIR 120 181 -81 551 110 0 12 chr11 129861905 129861987 -18921485 + AluSc SINE Alu 2 82 -227 676 201 50 19 chr11 129862043 129862202 -18921270 + L1MB4 LINE L1 5201 5364 -782 1802 131 81 34 chr11 129862223 129862544 -18920928 + MER2 DNA MER2_type 10 345 0 4107 168 27 21 chr11 129862544 129863307 -18920165 + L1MB4 LINE L1 5363 6133 -47 2169 130 0 7 chr11 129863307 129863608 -18919864 + AluSx SINE Alu 1 299 -13 4107 168 27 21 chr11 129863608 129863649 -18919823 + L1MB4 LINE L1 6133 6172 -8 283 294 47 0 chr11 129863676 129863761 -18919711 - L2 LINE L2 -36 3277 3189 351 288 61 43 chr11 129863807 129864210 -18919262 + L1P LINE L1 4902 5306 -840 2292 121 0 3 chr11 129864260 129864567 -18918905 - AluSq SINE Alu -7 306 1 479 264 90 0 chr11 129864576 129864720 -18918752 + L1MC4 LINE L1 5405 5561 -2247 1774 160 3 11 chr11 129864721 129865003 -18918469 + AluJb SINE Alu 1 280 -32 231 324 0 0 chr11 129865003 129865114 -18918358 + (TA)n Simple_repeat Simple_repeat 2 112 0 242 257 29 0 chr11 129865124 129865194 -18918278 - L1MC3 LINE L1 -1140 6645 6574 224 238 0 0 chr11 129865196 129865238 -18918234 + (TATATG)n Simple_repeat Simple_repeat 5 46 0 230 208 0 0 chr11 129865239 129865287 -18918185 + L1MC4 LINE L1 6654 6701 -1341 228 300 0 0 chr11 129865287 129865377 -18918095 + L1MC4 LINE L1 6614 6703 -1339 204 179 0 0 chr11 129865378 129865417 -18918055 + (TA)n Simple_repeat Simple_repeat 1 39 0 266 229 10 0 chr11 129865420 129865525 -18917947 + L1MC4 LINE L1 2006 6983 -1339 248 303 0 0 chr11 129865504 129865593 -18917879 - L1MC4 LINE L1 -1340 6702 6614 * 239 275 0 22 chr11 129865542 129865633 -18917839 + L1MC4 LINE L1 6615 6703 -1339 * 238 183 0 17 chr11 129865652 129865712 -18917760 + L1ME LINE L1 2006 2064 -4362 258 192 0 0 chr11 129865712 129865764 -18917708 + (TA)n Simple_repeat Simple_repeat 1 52 0 1479 193 63 28 chr11 129865902 129866352 -18917120 + L1ME LINE L1 5293 5759 -685 2201 87 0 93 chr11 129866362 129866722 -18916750 + AluSx SINE Alu 1 329 0 2065 88 0 98 chr11 129866822 129867139 -18916333 - AluSx SINE Alu -16 286 1 1507 195 61 28 chr11 129867149 129867600 -18915872 - L1ME LINE L1 -683 5759 5293 258 192 0 0 chr11 129867739 129867791 -18915681 + (TA)n Simple_repeat Simple_repeat 1 52 0 238 183 0 17 chr11 129867791 129867851 -18915621 - L1ME LINE L1 -4362 2064 2006 239 275 0 22 chr11 129867870 129867961 -18915511 - L1MC4 LINE L1 -1339 6703 6615 * 248 303 0 0 chr11 129867910 129867999 -18915473 + L1MC4 LINE L1 6614 6702 -1340 * 266 229 10 0 chr11 129867978 129868083 -18915389 - L1MC4 LINE L1 -1339 6983 2006 204 179 0 0 chr11 129868086 129868125 -18915347 + (TA)n Simple_repeat Simple_repeat 2 40 0 228 300 0 0 chr11 129868126 129868216 -18915256 - L1MC4 LINE L1 -1339 6703 6614 230 208 0 0 chr11 129868216 129868264 -18915208 - L1MC4 LINE L1 -1341 6701 6654 224 238 0 0 chr11 129868265 129868307 -18915165 + (CATATA)n Simple_repeat Simple_repeat 5 46 0 240 165 25 101 chr11 129868309 129868388 -18915084 + L1MC3 LINE L1 6574 6646 -1139 * 244 356 0 0 chr11 129868326 129868416 -18915056 - L1MC4 LINE L1 -1339 6703 6614 1774 160 3 11 chr11 129868452 129868734 -18914738 - AluJb SINE Alu -32 280 1 479 264 90 0 chr11 129868735 129868879 -18914593 - L1MC4 LINE L1 -2247 5561 5405 2154 138 0 3 chr11 129868888 129869193 -18914279 + AluSq SINE Alu 1 304 -9 351 287 60 45 chr11 129869243 129869648 -18913824 - L1MC4 LINE L1 -840 5306 4902 283 294 47 0 chr11 129869694 129869779 -18913693 + L2 LINE L2 3189 3277 -36 264 122 0 0 chr11 129869807 129869848 -18913624 - L1MB4 LINE L1 -8 6172 6132 1895 146 3 10 chr11 129869848 129870149 -18913323 - AluSx SINE Alu -13 299 1 192 253 81 35 chr11 129870367 129870454 -18913018 + MIR SINE MIR 60 150 -112 23 0 0 0 chr11 129870454 129870477 -18912995 + AT_rich Low_complexity Low_complexity 1 23 0 217 302 0 0 chr11 129870538 129870591 -18912881 + MIR SINE MIR 204 256 -6 1419 242 91 64 chr11 129872405 129872871 -18910601 + MLT1F LTR MaLR 1 484 -58 1857 173 10 0 chr11 129872871 129873160 -18910312 - AluJo SINE Alu -20 292 1 1419 242 91 64 chr11 129873160 129873221 -18910251 + MLT1F LTR MaLR 484 542 0 501 17 0 0 chr11 129873284 129873342 -18910130 + (CA)n Simple_repeat Simple_repeat 2 59 0 2271 90 0 19 chr11 129875184 129875496 -18907976 - AluSc SINE Alu -3 306 1 2234 110 0 3 chr11 129875532 129875832 -18907640 - AluJb SINE Alu -13 299 1 1987 130 3 3 chr11 129875954 129876239 -18907233 + AluSq SINE Alu 1 285 -28 1578 192 3 20 chr11 129876397 129876694 -18906778 - AluJo SINE Alu -20 292 1 389 186 65 65 chr11 129877192 129877316 -18906156 + L1ME4a LINE L1 5953 6076 -45 513 355 113 20 chr11 129877334 129877680 -18905792 + L2 LINE L2 2827 3204 -68 2343 87 0 7 chr11 129877803 129878103 -18905369 + AluSc SINE Alu 1 298 -11 1017 217 28 9 chr11 129878788 129879000 -18904472 - MER58A DNA MER1_type 0 224 9 1805 161 0 23 chr11 129879336 129879635 -18903837 - AluJb SINE Alu -18 294 3 1056 176 0 11 chr11 129880460 129880636 -18902836 - FAM SINE Alu -1 174 1 2106 86 4 0 chr11 129880821 129881089 -18902383 - AluSc SINE Alu -40 269 1 1198 194 0 4 chr11 129881093 129881330 -18902142 - L1 LINE L1 -1052 5094 4859 2322 110 0 0 chr11 129881362 129881662 -18901810 + AluSx SINE Alu 1 300 -12 843 135 15 15 chr11 129881843 129881976 -18901496 + AluJo/FLAM SINE Alu 1 133 -169 791 129 15 15 chr11 129881852 129881984 -18901488 + FLAM_C SINE Alu 10 141 -2 1982 131 0 26 chr11 129881986 129882292 -18901180 + AluSx SINE Alu 1 298 -14 2303 80 7 13 chr11 129882405 129882704 -18900768 - AluSg SINE Alu -13 297 1 645 197 66 0 chr11 129882838 129882960 -18900512 + FLAM_C SINE Alu 1 130 -3 604 130 98 16 chr11 129883195 129883214 -18900258 + AluJo/FLAM SINE Alu 1 17 -285 2268 87 0 42 chr11 129883214 129883524 -18899948 + AluSx SINE Alu 1 297 -15 604 130 98 16 chr11 129883524 129883627 -18899845 + AluJo/FLAM SINE Alu 17 133 -169 888 81 81 0 chr11 129883627 129883750 -18899722 + AluSc SINE Alu 1 133 -176 2008 113 0 30 chr11 129883750 129884052 -18899420 + AluSc SINE Alu 1 293 -16 1722 125 24 27 chr11 129884075 129884370 -18899102 + AluSq SINE Alu 1 294 -19 2120 105 7 3 chr11 129886360 129886685 -18896787 + AluSx SINE Alu 1 326 0 2149 108 10 16 chr11 129887992 129888298 -18895174 + AluSx SINE Alu 1 304 -8 2241 105 7 0 chr11 129888332 129888627 -18894845 + AluSq SINE Alu 1 297 -16 2253 108 10 0 chr11 129888630 129888926 -18894546 + AluSx SINE Alu 2 300 -12 2333 103 0 0 chr11 129888932 129889233 -18894239 + AluSp SINE Alu 5 305 -8 2012 99 40 60 chr11 129889341 129889622 -18893850 - MER41B LTR ERV1 -264 371 97 2393 73 10 0 chr11 129889622 129889911 -18893561 + AluSq SINE Alu 1 292 -21 2012 99 40 60 chr11 129889911 129889982 -18893490 - MER41B LTR ERV1 -538 97 26 1935 148 0 13 chr11 129889985 129890283 -18893189 + AluJb SINE Alu 1 294 -18 1939 140 13 7 chr11 129890321 129890629 -18892843 - AluSx SINE Alu -2 310 1 1880 138 3 21 chr11 129890959 129891292 -18892180 + AluSx SINE Alu 1 328 0 738 134 36 0 chr11 129891838 129891950 -18891522 + AluJb SINE Alu 2 117 -195 189 0 0 0 chr11 129891951 129891972 -18891500 + (T)n Simple_repeat Simple_repeat 1 21 0 290 275 78 7 chr11 129892118 129892270 -18891202 - MIR SINE MIR -65 143 31 2250 74 7 52 chr11 129892455 129892764 -18890708 + AluSq SINE Alu 1 295 -18 21 57 0 0 chr11 129892824 129892859 -18890613 + AT_rich Low_complexity Low_complexity 1 35 0 198 0 0 0 chr11 129893048 129893070 -18890402 + (A)n Simple_repeat Simple_repeat 1 22 0 2308 99 3 0 chr11 129894327 129894631 -18888841 - AluSc SINE Alu -4 305 1 2608 44 0 0 chr11 129895478 129895772 -18887700 - AluY SINE Alu -16 295 2 458 241 83 8 chr11 129896033 129896166 -18887306 + L1MA10 LINE L1 6184 6326 -8 2226 113 7 3 chr11 129896408 129896708 -18886764 + AluSx SINE Alu 1 301 -11 2212 109 0 0 chr11 129896709 129896992 -18886480 + AluSq SINE Alu 1 283 -30 194 0 39 0 chr11 129896998 129897024 -18886448 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 550 199 106 163 chr11 129897070 129897159 -18886313 - L1ME1 LINE L1 -28 6138 6046 1913 138 21 0 chr11 129897159 129897442 -18886030 + AluJb SINE Alu 1 289 -23 550 199 106 163 chr11 129897442 129897467 -18886005 - L1ME1 LINE L1 -120 6046 6021 663 154 10 0 chr11 129897467 129897571 -18885901 - U6 snRNA snRNA -2 105 1 550 199 106 163 chr11 129897571 129897737 -18885735 - L1ME1 LINE L1 -145 6021 5873 1439 182 3 62 chr11 129898014 129898321 -18885151 + AluJo SINE Alu 1 289 -23 1048 153 0 34 chr11 129898322 129898499 -18884973 + AluJo/FRAM SINE Alu 134 304 -8 1665 135 0 24 chr11 129899371 129899659 -18883813 + AluSp SINE Alu 41 322 0 839 221 17 0 chr11 129899659 129899831 -18883641 + AluJb SINE Alu 137 311 -1 1822 149 3 7 chr11 129899867 129900149 -18883323 + AluSg SINE Alu 1 281 -29 899 167 0 56 chr11 129900525 129900687 -18882785 - AluJo SINE Alu -159 153 1 405 223 298 0 chr11 129900880 129901001 -18882471 + MER105 DNA DNA 46 202 -2 2231 88 16 10 chr11 129901263 129901570 -18881902 + AluSp SINE Alu 1 309 -4 583 250 59 54 chr11 129901630 129901848 -18881624 + L1MC4a LINE L1 5556 5745 -376 2236 81 41 14 chr11 129901848 129902143 -18881329 + AluY SINE Alu 4 306 -5 583 250 59 54 chr11 129902143 129902208 -18881264 + L1MC4a LINE L1 5745 5808 -313 * 734 214 17 134 chr11 129902201 129902518 -18880954 - L1MC4 LINE L1 0 8042 7690 2264 106 0 10 chr11 129902518 129902830 -18880642 - AluSq SINE Alu -4 309 1 996 188 6 0 chr11 129902832 129903002 -18880470 - FAM SINE Alu -4 171 1 734 214 17 134 chr11 129903002 129903083 -18880389 - L1MC4 LINE L1 -353 7689 7688 3737 148 92 100 chr11 129903085 129904017 -18879455 + MER21A LTR ERV1 1 925 -6 245 214 0 36 chr11 129904034 129904090 -18879382 - L1MC4 LINE L1 -372 7670 7617 180 0 0 0 chr11 129904692 129904712 -18878760 + (T)n Simple_repeat Simple_repeat 1 20 0 1887 123 0 93 chr11 129904865 129905197 -18878275 - AluY SINE Alu -8 303 3 1996 130 33 3 chr11 129905342 129905641 -18877831 + AluSx SINE Alu 1 308 -4 2028 156 3 0 chr11 129905900 129906207 -18877265 + AluSx SINE Alu 1 308 -4 715 214 8 0 chr11 129906478 129906609 -18876863 + FLAM_A SINE Alu 1 132 -1 2397 83 0 10 chr11 129906613 129906927 -18876545 + AluY SINE Alu 1 311 0 1940 146 0 26 chr11 129907959 129908267 -18875205 - AluJb SINE Alu -12 300 1 2321 101 0 0 chr11 129908683 129908980 -18874492 - AluSx SINE Alu -15 297 1 849 112 15 22 chr11 129908985 129909119 -18874353 - FLAM_C SINE Alu 0 133 1 313 311 57 17 chr11 129909124 129909301 -18874171 - L1M4 LINE L1 -844 5302 5119 2477 75 0 0 chr11 129909304 129909599 -18873873 - AluSc SINE Alu -14 295 1 559 138 98 24 chr11 129909599 129909702 -18873770 - AluJo/FLAM SINE Alu -170 132 17 2276 87 0 42 chr11 129909702 129910013 -18873459 - AluSx SINE Alu -14 298 1 559 138 98 24 chr11 129910013 129910032 -18873440 - AluJo/FLAM SINE Alu -285 17 1 645 197 66 0 chr11 129910267 129910389 -18873083 - FLAM_C SINE Alu -3 130 1 2312 80 7 13 chr11 129910523 129910823 -18872649 + AluSg SINE Alu 1 298 -12 1959 97 7 14 chr11 129910893 129911181 -18872291 + AluSx SINE Alu 27 312 0 1958 128 4 7 chr11 129912327 129912633 -18870839 + AluSx SINE Alu 10 314 0 2517 63 0 0 chr11 129913628 129913931 -18869541 - AluY SINE Alu -8 303 1 312 385 9 22 chr11 129914009 129914235 -18869237 + L2 LINE L2 2610 2832 -482 807 142 15 8 chr11 129916984 129917118 -18866354 + MER2 DNA MER2_type 1 135 -210 1464 187 49 25 chr11 129917235 129917519 -18865953 - AluJb SINE Alu -21 291 1 1551 188 7 23 chr11 129917912 129918221 -18865251 - AluJo SINE Alu -4 308 5 3537 160 52 24 chr11 129918334 129919048 -18864424 + L1MB7 LINE L1 5440 6173 -11 277 242 202 0 chr11 129919613 129919712 -18863760 + MIR3 SINE MIR 88 206 -2 199 306 48 0 chr11 129919830 129919892 -18863580 + L2 LINE L2 2428 2492 -822 361 305 81 67 chr11 129920457 129920755 -18862717 - L2 LINE L2 -55 3217 2916 279 264 226 0 chr11 129921263 129921418 -18862054 - MIR SINE MIR -3 259 70 243 267 17 69 chr11 129921844 129921960 -18861512 + MIR3 SINE MIR 93 202 -6 1699 166 57 0 chr11 129922444 129922727 -18860745 - AluJo SINE Alu -13 299 1 459 264 88 74 chr11 129922750 129923046 -18860426 + L1MC4a LINE L1 5724 6023 -98 2321 74 10 10 chr11 129923201 129923500 -18859972 - AluY SINE Alu -12 299 1 581 250 46 7 chr11 129923751 129923903 -18859569 + L1ME3 LINE L1 5925 6082 -80 1582 179 11 11 chr11 129923906 129924168 -18859304 - AluJo SINE Alu -50 262 1 2239 124 0 0 chr11 129928902 129929208 -18854264 - AluSx SINE Alu -2 310 5 2064 116 0 35 chr11 129929697 129930007 -18853465 - AluSx SINE Alu -13 299 1 2010 118 24 3 chr11 129931393 129931681 -18851791 - AluSx SINE Alu -18 294 1 3156 121 25 4 chr11 129932135 129932622 -18850850 + L1MC1 LINE L1 5832 6328 -5 1890 172 0 7 chr11 129933486 129933789 -18849683 + AluJo SINE Alu 1 301 -11 2256 76 7 0 chr11 129933881 129934157 -18849315 + AluSp SINE Alu 1 278 -35 255 0 30 0 chr11 129934157 129934223 -18849249 + AluSp SINE Alu 253 319 0 703 230 86 14 chr11 129934242 129934464 -18849008 - MIR SINE MIR -24 238 1 201 245 0 0 chr11 129935493 129935542 -18847930 - L2 LINE L2 -4 3309 3261 2235 107 3 3 chr11 129935727 129936036 -18847436 + AluSc SINE Alu 1 309 0 1958 128 4 7 chr11 129937182 129937488 -18845984 + AluSx SINE Alu 10 314 0 2517 63 0 0 chr11 129938483 129938786 -18844686 - AluY SINE Alu -8 303 1 299 389 9 22 chr11 129938864 129939090 -18844382 + L2 LINE L2 2610 2832 -482 767 144 30 8 chr11 129941801 129941933 -18841539 + MER2 DNA MER2_type 1 135 -210 189 0 0 0 chr11 129942346 129942367 -18841105 + (A)n Simple_repeat Simple_repeat 1 21 0 1305 212 52 27 chr11 129942431 129942556 -18840916 + MER2 DNA MER2_type 8 128 -217 1634 114 0 42 chr11 129942556 129942820 -18840652 - AluSx SINE Alu -9 303 51 1305 212 52 27 chr11 129942820 129943024 -18840448 + MER2 DNA MER2_type 128 345 0 2293 97 7 0 chr11 129943610 129943910 -18839562 - AluY SINE Alu -9 302 1 1321 188 28 82 chr11 129943983 129944372 -18839100 + L1MC4 LINE L1 7675 8042 0 1914 115 9 79 chr11 129944887 129945217 -18838255 - AluJo SINE Alu -4 308 2 1030 244 68 91 chr11 129945369 129945712 -18837760 - L1ME4a LINE L1 0 6121 5797 2435 58 0 3 chr11 129945712 129946004 -18837468 - AluY SINE Alu -16 295 5 1030 244 68 91 chr11 129946004 129946288 -18837184 - L1ME4a LINE L1 -324 5797 5508 236 210 50 60 chr11 129946389 129946489 -18836983 - L1P LINE L1 -787 5364 5266 1664 170 7 21 chr11 129947764 129948053 -18835419 - AluJb SINE Alu -21 291 7 2376 61 7 0 chr11 129948263 129948557 -18834915 - AluY SINE Alu -15 296 1 2175 131 0 0 chr11 129948559 129948857 -18834615 - AluSx SINE Alu -14 298 1 1720 143 0 73 chr11 129948866 129949180 -18834292 - AluJo SINE Alu -21 291 1 4956 86 7 28 chr11 129950146 129950838 -18832634 + L1MA3 LINE L1 5596 6274 -31 1948 141 3 23 chr11 129950838 129951144 -18832328 + AluJb SINE Alu 1 300 -12 4956 86 7 28 chr11 129951144 129951176 -18832296 + L1MA3 LINE L1 6274 6305 0 25 0 0 0 chr11 129951340 129951365 -18832107 + AT_rich Low_complexity Low_complexity 1 25 0 273 229 0 36 chr11 129951365 129951448 -18832024 - L1MC5 LINE L1 -44 7917 7838 224 128 21 43 chr11 129952362 129952409 -18831063 - L2 LINE L2 0 3313 3268 2036 93 0 0 chr11 129952571 129952850 -18830622 + L1MA2 LINE L1 6026 6304 0 869 164 13 25 chr11 129952883 129953042 -18830430 + FRAM SINE Alu 1 157 -19 232 273 36 0 chr11 129953197 129953252 -18830220 + MER3 DNA MER1_type 32 88 -121 * 642 172 98 128 chr11 129953218 129953422 -18830050 - MER3 DNA MER1_type -7 202 5 22 0 0 0 chr11 129953918 129953940 -18829532 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr11 129953954 129953986 -18829486 + AT_rich Low_complexity Low_complexity 1 32 0 2234 115 3 0 chr11 129953997 129954292 -18829180 + AluSx SINE Alu 1 296 -16 1906 142 88 19 chr11 129954297 129954670 -18828802 + L1MB4 LINE L1 5782 6180 0 273 278 86 33 chr11 129954671 129954822 -18828650 + L2 LINE L2 2444 2602 -712 310 261 108 57 chr11 129954867 129955125 -18828347 + L2 LINE L2 2793 3070 -243 2251 90 45 0 chr11 129955133 129955422 -18828050 + AluSx SINE Alu 1 302 -10 738 240 0 6 chr11 129955424 129955599 -18827873 + AluSg/x SINE Alu 130 303 -9 329 224 41 20 chr11 129955649 129955747 -18827725 - L2 LINE L2 -994 2320 2221 442 209 61 52 chr11 129955781 129955896 -18827576 + L2 LINE L2 3198 3313 0 244 325 91 22 chr11 129955889 129956120 -18827352 - L2 LINE L2 -1139 2175 1929 * 533 188 145 17 chr11 129956127 129956244 -18827228 + FLAM_A SINE Alu 1 132 -1 2327 99 0 3 chr11 129956252 129956555 -18826917 + AluSq SINE Alu 1 302 -11 881 158 60 5 chr11 129956555 129957120 -18826352 + L1MB7 LINE L1 5443 6183 -1 2186 89 0 23 chr11 129957149 129957453 -18826019 - AluY SINE Alu -14 297 1 2350 95 0 3 chr11 129958736 129959030 -18824442 + AluSx SINE Alu 1 293 -19 27 0 0 0 chr11 129959101 129959128 -18824344 + AT_rich Low_complexity Low_complexity 1 27 0 1903 149 0 36 chr11 129959128 129959306 -18824166 - AluJo SINE Alu -21 291 127 2598 47 0 7 chr11 129959306 129959604 -18823868 + AluY SINE Alu 1 296 -15 1903 149 0 36 chr11 129959604 129959727 -18823745 - AluJo SINE Alu -185 127 1 207 69 0 0 chr11 129960064 129960093 -18823379 + (CAT)n Simple_repeat Simple_repeat 2 30 0 2281 97 0 10 chr11 129961411 129961710 -18821762 + AluSg SINE Alu 1 296 -14 2365 106 0 0 chr11 129961730 129962032 -18821440 + AluSx SINE Alu 1 302 -10 566 124 0 0 chr11 129962032 129962121 -18821351 + L1MB4 LINE L1 6092 6180 0 2318 102 3 0 chr11 129962346 129962649 -18820823 - AluSp SINE Alu -9 304 1 2419 91 0 3 chr11 129962652 129962959 -18820513 - AluSp SINE Alu -7 306 1 2211 110 3 3 chr11 129963987 129964279 -18819193 - AluSq SINE Alu -15 298 7 1028 86 7 7 chr11 129964280 129964419 -18819053 - AluSq/x SINE Alu -174 139 1 345 247 31 21 chr11 129964421 129964518 -18818954 - MIR SINE MIR -71 191 94 1367 122 0 20 chr11 129965021 129965217 -18818255 - AluSq SINE Alu -119 194 3 2267 97 0 3 chr11 129965253 129965553 -18817919 + AluSx SINE Alu 3 301 -11 563 241 99 94 chr11 129966112 129966494 -18816978 - MLT1J LTR MaLR -19 492 109 890 100 0 0 chr11 129966941 129967051 -18816421 - AluSq/x SINE Alu -203 110 1 199 231 115 13 chr11 129967577 129967655 -18815817 - MIR SINE MIR -117 145 60 202 128 21 43 chr11 129969091 129969117 -18814355 + (TAA)n Simple_repeat Simple_repeat 2 28 -19 2231 85 3 3 chr11 129969117 129969400 -18814072 + AluSq SINE Alu 1 283 -30 202 128 21 43 chr11 129969400 129969420 -18814052 + (TAA)n Simple_repeat Simple_repeat 28 47 0 289 249 153 34 chr11 129969489 129969698 -18813774 - L2 LINE L2 -232 3081 2848 1930 140 4 0 chr11 129970447 129970726 -18812746 - AluSp SINE Alu -33 280 1 24 0 0 0 chr11 129970726 129970750 -18812722 + AT_rich Low_complexity Low_complexity 1 24 0 205 98 49 0 chr11 129970750 129970791 -18812681 + (TA)n Simple_repeat Simple_repeat 2 44 0 979 180 0 24 chr11 129970791 129970958 -18812514 - AluSg/x SINE Alu -23 289 127 1558 112 0 5 chr11 129971063 129971268 -18812204 - AluSx SINE Alu -108 204 1 319 299 154 0 chr11 129971447 129971564 -18811908 - L2 LINE L2 0 3272 3138 2160 126 0 0 chr11 129971954 129972256 -18811216 + AluSx SINE Alu 1 302 -10 2375 81 0 7 chr11 129972335 129972645 -18810827 + AluSx SINE Alu 1 308 -4 1121 148 0 6 chr11 129972645 129972814 -18810658 + AluSg/x SINE Alu 132 299 -11 329 224 41 20 chr11 129972866 129972964 -18810508 - L2 LINE L2 -994 2320 2221 442 209 61 52 chr11 129972998 129973113 -18810359 + L2 LINE L2 3198 3313 0 267 330 88 21 chr11 129973106 129973345 -18810127 - L2 LINE L2 -1139 2175 1921 * 272 195 0 65 chr11 129973387 129973464 -18810008 + FLAM_A SINE Alu 62 133 0 1958 126 0 7 chr11 129973472 129973749 -18809723 + AluSx SINE Alu 1 275 -37 2314 85 0 3 chr11 129973840 129974133 -18809339 + AluSc SINE Alu 4 295 -14 441 272 107 0 chr11 129974504 129974673 -18808799 - MIR SINE MIR -11 251 65 1902 129 0 30 chr11 129974678 129974973 -18808499 + AluSx SINE Alu 1 286 -26 25 0 0 0 chr11 129974974 129974999 -18808473 + AT_rich Low_complexity Low_complexity 1 25 0 1207 131 6 0 chr11 129975005 129975180 -18808292 + AluSg/x SINE Alu 118 293 -19 27 0 0 0 chr11 129975251 129975278 -18808194 + AT_rich Low_complexity Low_complexity 1 27 0 1903 149 0 36 chr11 129975278 129975456 -18808016 - AluJo SINE Alu -21 291 127 2598 47 0 7 chr11 129975456 129975754 -18807718 + AluY SINE Alu 1 296 -15 1903 149 0 36 chr11 129975754 129975877 -18807595 - AluJo SINE Alu -185 127 1 207 69 0 0 chr11 129976214 129976243 -18807229 + (CAT)n Simple_repeat Simple_repeat 2 30 0 2281 97 0 10 chr11 129977561 129977860 -18805612 + AluSg SINE Alu 1 296 -14 2066 121 16 10 chr11 129977880 129978185 -18805287 + AluSx SINE Alu 1 307 -5 283 156 0 0 chr11 129978187 129978232 -18805240 + AluJo SINE Alu 1 45 -255 1474 71 0 6 chr11 129978232 129978415 -18805057 - AluSq SINE Alu -131 182 1 210 275 113 49 chr11 129978659 129978801 -18804671 - MER5B DNA MER1_type -27 151 1 186 167 28 0 chr11 129979239 129979275 -18804197 + MIR SINE MIR 37 73 -135 1103 153 11 37 chr11 129979378 129979568 -18803904 + AluJo SINE Alu 1 185 -127 288 0 0 0 chr11 129979696 129979728 -18803744 + (A)n Simple_repeat Simple_repeat 1 32 0 38 0 0 0 chr11 129979737 129979775 -18803697 + AT_rich Low_complexity Low_complexity 1 38 0 38 39 0 39 chr11 129979785 129979863 -18803609 + GC_rich Low_complexity Low_complexity 1 75 0 21 0 0 0 chr11 129979900 129979921 -18803551 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr11 129979921 129979944 -18803528 + GC_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chr11 129980069 129980094 -18803378 + (A)n Simple_repeat Simple_repeat 1 25 0 694 274 75 16 chr11 129980268 129980523 -18802949 + LTR16B LTR ERVL 192 461 -3 1063 164 229 0 chr11 129981010 129981211 -18802261 + AluJo SINE Alu 49 295 -17 2392 69 3 3 chr11 129981395 129981684 -18801788 + AluSp SINE Alu 9 297 -16 2403 86 0 0 chr11 129981849 129982151 -18801321 - AluY SINE Alu -9 302 1 1846 140 0 31 chr11 129982426 129982750 -18800722 - AluSx SINE Alu 0 315 1 225 380 57 6 chr11 129983025 129983183 -18800289 + L2 LINE L2 2895 3060 -212 270 294 0 24 chr11 129983745 129983830 -18799642 + CT-rich Low_complexity Low_complexity 1 83 0 327 100 0 0 chr11 129987243 129987293 -18796179 + Alu SINE Alu 253 302 0 1276 44 6 0 chr11 129988446 129988604 -18794868 + L1PA3 LINE L1 5997 6155 0 2305 111 0 0 chr11 129990203 129990501 -18792971 - AluSx SINE Alu -14 298 1 530 222 77 0 chr11 129990566 129990683 -18792789 - FLAM_A SINE Alu -7 126 1 1824 124 60 18 chr11 129990743 129991063 -18792409 - AluSx SINE Alu 0 312 1 712 202 47 0 chr11 129991145 129991274 -18792198 + AluJo SINE Alu 7 141 -171 1466 168 9 0 chr11 129991276 129991508 -18791964 - AluJo SINE Alu -40 272 39 26 50 0 0 chr11 129991510 129991550 -18791922 + AT_rich Low_complexity Low_complexity 1 40 0 185 387 9 0 chr11 129991938 129992044 -18791428 + MIR SINE MIR 21 127 -135 1560 86 18 0 chr11 129992119 129992340 -18791132 - HSMAR2 DNA Mariner -1 1301 1077 806 139 0 8 chr11 129992340 129992462 -18791010 - AluSc SINE Alu -12 297 177 7239 96 30 16 chr11 129992475 129993038 -18790434 - HSMAR2 DNA Mariner -216 1086 499 2101 132 3 13 chr11 129993038 129993342 -18790130 - AluSq SINE Alu -12 301 1 7239 96 30 16 chr11 129993342 129993848 -18789624 - HSMAR2 DNA Mariner -803 499 2 281 241 0 0 chr11 129993873 129993931 -18789541 - MIR SINE MIR -76 132 75 915 113 0 23 chr11 129994338 129994471 -18789001 + FLAM_C SINE Alu 1 130 -3 2476 62 0 13 chr11 129994734 129995043 -18788429 + AluY SINE Alu 1 305 -6 249 33 0 0 chr11 129995249 129995279 -18788193 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1993 151 0 7 chr11 129995342 129995647 -18787825 + AluSx SINE Alu 1 303 -9 1001 181 12 0 chr11 129996765 129996931 -18786541 + FAM SINE Alu 1 168 -7 1709 162 7 10 chr11 129997006 129997303 -18786169 + AluJb SINE Alu 1 296 -16 2003 99 0 89 chr11 129997601 129997925 -18785547 + AluSx SINE Alu 1 295 -17 1930 136 14 20 chr11 129998229 129998524 -18784948 + AluSx SINE Alu 1 293 -19 264 339 165 0 chr11 129998958 129999079 -18784393 + L2 LINE L2 3127 3267 -5 1636 162 16 26 chr11 129999209 129999518 -18783954 + AluJo SINE Alu 1 306 -6 240 299 75 59 chr11 129999754 129999941 -18783531 - L2 LINE L2 -177 3095 2906 2298 106 3 19 chr11 130000025 130000337 -18783135 + AluSg SINE Alu 1 307 -3 2232 113 0 3 chr11 130000958 130001250 -18782222 + AluSg SINE Alu 2 292 -18 735 143 109 0 chr11 130001257 130001376 -18782096 - FLAM_C SINE Alu -10 133 2 617 189 47 16 chr11 130001459 130001586 -18781886 + AluJo SINE Alu 1 131 -171 1722 162 40 13 chr11 130001606 130001909 -18781563 + AluJb SINE Alu 1 311 -1 28 0 0 0 chr11 130001909 130001937 -18781535 + AT_rich Low_complexity Low_complexity 1 28 0 455 181 118 21 chr11 130002250 130002394 -18781078 - L2 LINE L2 0 3313 3156 880 198 13 0 chr11 130002406 130002563 -18780909 + AluJo SINE Alu 137 295 -17 635 185 143 63 chr11 130002679 130002868 -18780604 + MER58 DNA MER1_type 9 212 -2208 364 132 19 0 chr11 130002874 130002927 -18780545 + Tigger5 DNA MER2_type 1 54 -2269 461 202 34 0 chr11 130002933 130003022 -18780450 + Tigger5 DNA MER2_type 2232 2323 0 420 171 0 14 chr11 130003022 130003091 -18780381 + MER58 DNA MER1_type 217 284 -57 2110 260 84 117 chr11 130003121 130004666 -18778806 - L2 LINE L2 -297 3016 1524 2376 94 0 0 chr11 130004666 130004974 -18778498 + AluSg SINE Alu 2 309 -1 2110 260 84 117 chr11 130004974 130005023 -18778449 - L2 LINE L2 -1789 1524 1475 1686 173 14 0 chr11 130005054 130005343 -18778129 - AluJo SINE Alu -19 293 1 877 228 12 6 chr11 130005392 130005563 -18777909 + FAM SINE Alu 1 172 -3 1785 170 6 16 chr11 130005805 130005941 -18777531 + AluJo SINE Alu 1 137 -175 1832 133 0 18 chr11 130005941 130006220 -18777252 + AluSx SINE Alu 35 308 -4 1785 170 6 16 chr11 130006220 130006394 -18777078 + AluJo SINE Alu 137 308 -4 1767 144 3 85 chr11 130007984 130008324 -18775148 - AluJb SINE Alu 0 312 1 703 253 129 33 chr11 130009630 130009962 -18773510 - L3b LINE CR1 -118 1465 1102 371 323 24 24 chr11 130011043 130011170 -18772302 + MIR SINE MIR 1 127 -135 2026 135 0 0 chr11 130011217 130011529 -18771943 - AluSx SINE Alu 0 312 1 2319 104 3 3 chr11 130011566 130011874 -18771598 - AluSx SINE Alu -4 308 1 643 282 75 0 chr11 130012579 130012720 -18770752 - MIR SINE MIR -21 241 77 1863 181 7 3 chr11 130012720 130013029 -18770443 + AluJb SINE Alu 1 310 -2 643 282 75 0 chr11 130013029 130013100 -18770372 - MIR SINE MIR -185 77 13 522 146 104 0 chr11 130016327 130016423 -18767049 + FLAM_A SINE Alu 26 131 -11 380 301 105 7 chr11 130016548 130016691 -18766781 - MIR3 SINE MIR -48 160 4 22 0 0 0 chr11 130016791 130016813 -18766659 + AT_rich Low_complexity Low_complexity 1 22 0 246 62 0 0 chr11 130018405 130018437 -18765035 + (T)n Simple_repeat Simple_repeat 1 32 0 183 100 0 0 chr11 130020881 130020911 -18762561 + (CCG)n Simple_repeat Simple_repeat 1 30 0 42 92 0 0 chr11 130020918 130021037 -18762435 + GC_rich Low_complexity Low_complexity 1 119 0 25 51 0 0 chr11 130021316 130021355 -18762117 + GC_rich Low_complexity Low_complexity 1 39 0 326 23 0 23 chr11 130023102 130023146 -18760326 + (TC)n Simple_repeat Simple_repeat 2 44 0 387 232 309 5 chr11 130023542 130023736 -18759736 - MIR SINE MIR -2 260 8 2359 43 14 3 chr11 130023756 130024038 -18759434 + AluY SINE Alu 19 303 -8 21 0 0 0 chr11 130024087 130024108 -18759364 + AT_rich Low_complexity Low_complexity 1 21 0 2391 71 10 10 chr11 130024162 130024471 -18759001 + AluSx SINE Alu 1 309 -3 2232 100 33 0 chr11 130024481 130024780 -18758692 + AluSg SINE Alu 1 309 -1 1306 265 81 11 chr11 130024877 130025335 -18758137 - L1MC4a LINE L1 -117 6004 5514 1979 148 10 3 chr11 130025335 130025645 -18757827 + AluSx SINE Alu 1 312 0 499 187 120 26 chr11 130025663 130025868 -18757604 + AluJb SINE Alu 26 298 -14 234 0 0 0 chr11 130025877 130025903 -18757569 + (TAAAA)n Simple_repeat Simple_repeat 4 29 0 407 300 30 16 chr11 130026159 130026337 -18757135 + MIR SINE MIR 18 198 -62 25 0 0 0 chr11 130026689 130026714 -18756758 + AT_rich Low_complexity Low_complexity 1 25 0 2270 95 3 3 chr11 130026714 130027008 -18756464 + AluSp SINE Alu 1 294 -19 1731 131 13 67 chr11 130027040 130027209 -18756263 - AluSx SINE Alu -16 296 150 2349 115 0 0 chr11 130027209 130027513 -18755959 - AluSx SINE Alu -8 304 1 1731 131 13 67 chr11 130027513 130027656 -18755816 - AluSx SINE Alu -162 150 1 1718 120 0 0 chr11 130027706 130027939 -18755533 + AluSg/x SINE Alu 65 297 -13 262 283 142 9 chr11 130027980 130028086 -18755386 + L2 LINE L2 3151 3270 -2 395 224 13 0 chr11 130028476 130028552 -18754920 - L2 LINE L2 -1 3271 3195 1436 131 72 0 chr11 130028643 130028865 -18754607 + AluSx SINE Alu 1 238 -74 1873 171 3 13 chr11 130028905 130029214 -18754258 + AluJb SINE Alu 1 306 -6 234 0 0 0 chr11 130029874 130029900 -18753572 + (A)n Simple_repeat Simple_repeat 1 26 0 290 235 88 88 chr11 130029998 130030113 -18753359 + L2 LINE L2 3137 3254 -18 853 156 0 15 chr11 130030113 130030248 -18753224 + FLAM_C SINE Alu 1 133 0 290 235 88 88 chr11 130030248 130030268 -18753204 + L2 LINE L2 3253 3272 0 325 114 35 167 chr11 130031981 130032054 -18751418 - MER53 DNA DNA -79 110 56 2558 35 0 3 chr11 130032054 130032344 -18751128 + AluY SINE Alu 1 289 -22 325 114 35 167 chr11 130032344 130032384 -18751088 - MER53 DNA DNA -133 56 12 1542 158 0 81 chr11 130032594 130032904 -18750568 + AluJb SINE Alu 1 285 -27 206 159 14 43 chr11 130032908 130032938 -18750534 + (TAA)n Simple_repeat Simple_repeat 2 31 -37 2379 70 0 3 chr11 130032938 130033223 -18750249 + AluSg SINE Alu 1 284 -26 206 159 14 43 chr11 130033223 130033261 -18750211 + (TAA)n Simple_repeat Simple_repeat 31 68 0 573 274 54 54 chr11 130033398 130033657 -18749815 - MIR SINE MIR -2 260 2 2040 106 7 20 chr11 130033911 130034213 -18749259 + AluSx SINE Alu 1 298 -14 251 143 102 0 chr11 130034266 130034315 -18749157 - L1MB8 LINE L1 -116 6062 6009 2081 108 38 0 chr11 130034315 130034603 -18748869 - AluSx SINE Alu -13 299 1 824 160 7 20 chr11 130034603 130034753 -18748719 - L1MB8 LINE L1 -396 5784 5637 1858 159 0 13 chr11 130034918 130035096 -18748376 - AluJb SINE Alu -17 295 137 2291 84 3 10 chr11 130035096 130035394 -18748078 - AluSx SINE Alu -16 296 1 1858 159 0 13 chr11 130035394 130035527 -18747945 - AluJb SINE Alu -175 137 4 347 313 30 8 chr11 130035609 130035740 -18747732 - MIR SINE MIR -27 235 102 249 108 0 0 chr11 130036910 130036947 -18746525 + (A)n Simple_repeat Simple_repeat 1 37 0 2019 120 3 0 chr11 130038476 130038792 -18744680 + AluSx SINE Alu 1 317 0 1187 106 12 0 chr11 130039185 130039355 -18744117 - AluSg/x SINE Alu -19 293 122 184 297 144 25 chr11 130041048 130041166 -18742306 + MIR SINE MIR 16 147 -61 2209 63 11 7 chr11 130041923 130042234 -18741238 + AluSp SINE Alu 1 312 0 228 188 78 16 chr11 130042682 130042746 -18740726 - MIR SINE MIR -67 141 74 360 0 0 0 chr11 130045284 130045324 -18738148 + (TG)n Simple_repeat Simple_repeat 1 40 0 2150 96 0 0 chr11 130045324 130045605 -18737867 - AluSx SINE Alu -31 281 1 401 270 42 26 chr11 130045652 130045814 -18737658 - MIR3 SINE MIR -62 146 11 267 152 0 0 chr11 130045975 130046021 -18737451 + T-rich Low_complexity Low_complexity 1 46 0 2141 118 0 25 chr11 130046144 130046465 -18737007 - AluSq SINE Alu 0 313 1 192 77 0 0 chr11 130047787 130047813 -18735659 + (T)n Simple_repeat Simple_repeat 1 26 0 2341 81 3 3 chr11 130047931 130048239 -18735233 - AluSx SINE Alu -4 308 1 1688 110 84 7 chr11 130048239 130048512 -18734960 - AluSx SINE Alu -18 294 1 426 267 113 26 chr11 130048593 130048786 -18734686 - MIR3 SINE MIR -50 212 1 487 200 11 0 chr11 130050573 130050668 -18732804 - MIR SINE MIR -75 133 38 264 167 0 0 chr11 130055520 130055568 -18727904 + (TGG)n Simple_repeat Simple_repeat 3 50 0 210 283 0 50 chr11 130056234 130056333 -18727139 + CT-rich Low_complexity Low_complexity 5 98 0 22 35 0 0 chr11 130056818 130056847 -18726625 + GC_rich Low_complexity Low_complexity 1 29 0 337 275 212 9 chr11 130057340 130057521 -18725951 + MIR SINE MIR 36 262 0 557 348 26 9 chr11 130058280 130058507 -18724965 - MIR SINE MIR -30 232 2 484 325 101 4 chr11 130058841 130059069 -18724403 + MIR SINE MIR 10 259 -3 1936 140 0 13 chr11 130059095 130059403 -18724069 - AluSq SINE Alu -9 304 1 382 316 105 43 chr11 130059612 130060125 -18723347 - L2 LINE L2 -38 3234 2689 201 39 0 0 chr11 130061509 130061535 -18721937 + (TCCC)n Simple_repeat Simple_repeat 3 28 0 194 304 96 52 chr11 130062126 130062241 -18721231 - L2 LINE L2 -5 3267 3148 201 147 0 0 chr11 130063806 130063840 -18719632 + (TTCC)n Simple_repeat Simple_repeat 2 35 0 196 224 0 35 chr11 130063880 130063965 -18719507 + CT-rich Low_complexity Low_complexity 1 82 0 571 303 63 5 chr11 130064889 130065110 -18718362 - MIR SINE MIR -27 235 2 * 637 199 0 60 chr11 130065110 130065249 -18718223 - MIR3 SINE MIR -30 178 49 191 125 25 0 chr11 130065616 130065656 -18717816 + CT-rich Low_complexity Low_complexity 1 41 0 186 362 87 66 chr11 130066053 130066249 -18717223 + L3b LINE CR1 1347 1546 -37 2401 57 0 0 chr11 130067736 130068035 -18715437 + AluY SINE Alu 1 299 -12 1464 132 45 0 chr11 130068399 130068619 -18714853 + MER30 DNA MER1_type 1 230 0 823 120 19 70 chr11 130068714 130068871 -18714601 + LTR39 LTR ERV1 1 149 -634 676 139 101 174 chr11 130068871 130069251 -18714221 + MER4C LTR ERV1 1 195 -270 2240 79 0 7 chr11 130069251 130069555 -18713917 - AluSx SINE Alu -10 302 1 676 139 101 174 chr11 130069555 130069641 -18713831 + MER4C LTR ERV1 195 286 -179 2242 106 0 0 chr11 130069684 130069987 -18713485 - AluSg SINE Alu -7 303 1 2940 78 95 0 chr11 130069991 130070400 -18713072 - LTR7 LTR ERV1 -2 448 1 2306 90 48 13 chr11 130070400 130070779 -18712693 - HERVH LTR ERV1 0 7713 7322 1338 118 20 0 chr11 130070777 130070981 -18712491 - HERVH LTR ERV1 -1894 5819 5612 * 4358 137 0 1 chr11 130070996 130071659 -18711813 - HERVH LTR ERV1 -2564 5149 4488 3387 97 4 8 chr11 130071661 130072165 -18711307 - HERVH LTR ERV1 -3720 3993 3492 789 152 41 0 chr11 130072155 130072300 -18711172 - HERVH LTR ERV1 -4423 3290 3140 * 11598 91 14 7 chr11 130072294 130073970 -18709502 - HERVH LTR ERV1 -4726 2987 1301 8443 38 1 0 chr11 130073970 130074938 -18708534 - LTR5 LTR ERVK 0 969 1 444 74 11 168 chr11 130074938 130075033 -18708439 - SVA Other Other -450 936 857 26949 26 2 0 chr11 130075033 130078304 -18705168 - HERVK LTR ERVK -95 7148 3872 1406 96 68 27 chr11 130078304 130078524 -18704948 - AluSp SINE Alu -84 229 1 293 154 0 0 chr11 130078530 130078582 -18704890 - Alu SINE Alu 0 300 249 1644 175 11 0 chr11 130078682 130078968 -18704504 - AluJb SINE Alu -23 289 1 1939 121 0 46 chr11 130079012 130079319 -18704153 + AluSx SINE Alu 1 293 -19 915 246 73 112 chr11 130079418 130079478 -18703994 - MLT1H LTR MaLR -7 542 481 1802 158 0 7 chr11 130079478 130079801 -18703671 + AluJb SINE Alu 1 321 0 915 246 73 112 chr11 130079801 130080219 -18703253 - MLT1H LTR MaLR -68 481 86 1704 130 101 0 chr11 130080219 130080495 -18702977 - AluSx SINE Alu -8 304 1 915 246 73 112 chr11 130080495 130080578 -18702894 - MLT1H LTR MaLR -463 86 1 206 176 20 0 chr11 130081084 130081135 -18702337 + (CAAA)n Simple_repeat Simple_repeat 1 52 0 752 93 0 0 chr11 130081167 130081264 -18702208 - AluSg/x SINE Alu -18 294 198 1869 132 7 0 chr11 130081287 130081567 -18701905 + AluSx SINE Alu 1 282 -30 361 326 101 13 chr11 130081600 130081773 -18701699 - L1ME LINE L1 -508 5613 5424 2137 101 3 0 chr11 130082259 130082556 -18700916 + AluSx SINE Alu 9 306 -6 1905 102 54 20 chr11 130082556 130082851 -18700621 + AluSp SINE Alu 1 305 -8 1577 167 0 45 chr11 130082913 130083225 -18700247 + AluJo SINE Alu 12 309 -3 1840 125 56 7 chr11 130083349 130083636 -18699836 - AluSx SINE Alu -11 301 1 2119 112 0 7 chr11 130083651 130083946 -18699526 - AluSx SINE Alu -19 293 1 216 0 0 0 chr11 130084283 130084307 -18699165 + (A)n Simple_repeat Simple_repeat 1 24 0 441 214 34 8 chr11 130084487 130084604 -18698868 - MER57A LTR ERV1 -4 399 280 1724 161 0 47 chr11 130084614 130084936 -18698536 - AluJo SINE Alu -3 309 3 287 156 0 16 chr11 130084937 130085001 -18698471 - L1MB5 LINE L1 -36 6138 6076 * 1407 178 28 31 chr11 130084984 130085142 -18698330 - L1M4 LINE L1 -2309 3837 3680 1586 179 13 26 chr11 130085142 130085454 -18698018 - AluJb SINE Alu -4 308 1 1407 178 28 31 chr11 130085454 130085615 -18697857 - L1M4 LINE L1 -2466 3680 3519 1778 167 16 3 chr11 130085675 130085992 -18697480 - MLT2D LTR ERVL -88 326 6 2240 103 0 0 chr11 130085992 130086292 -18697180 - AluSx SINE Alu -12 300 1 1651 97 4 23 chr11 130086316 130086574 -18696898 - L1M1 LINE L1 -732 5573 5321 763 143 0 0 chr11 130086604 130086709 -18696763 - FLAM_C SINE Alu -37 106 2 946 166 0 103 chr11 130086717 130087048 -18696424 - AluYa5 SINE Alu -13 298 2 786 128 47 0 chr11 130087065 130087214 -18696258 - L1MCa LINE L1 -4217 2209 2054 1105 189 0 26 chr11 130087243 130087470 -18696002 + MER46A DNA MER2_type 1 221 -15 4920 153 74 28 chr11 130087479 130087754 -18695718 - L1MCa LINE L1 -4443 1983 1722 1703 156 23 13 chr11 130087754 130088056 -18695416 - AluSx SINE Alu -1 311 7 4920 153 74 28 chr11 130088056 130088934 -18694538 - L1MCa LINE L1 -4704 1722 777 963 179 29 53 chr11 130088944 130089151 -18694321 - L1MCa LINE L1 -6202 224 23 2255 90 13 0 chr11 130089163 130089464 -18694008 - AluSx SINE Alu -7 305 1 1481 207 40 0 chr11 130089471 130089770 -18693702 - AluJo SINE Alu -1 311 1 1764 140 19 19 chr11 130089771 130090079 -18693393 - AluJb SINE Alu 0 312 5 2253 88 0 3 chr11 130090143 130090437 -18693035 - AluSx SINE Alu -19 293 1 1512 243 96 25 chr11 130090440 130090918 -18692554 - L1M4b LINE L1 -5392 1467 956 4459 127 99 139 chr11 130091528 130092825 -18690647 - pTR5 LTR ERV1 -143 2295 276 234 0 0 0 chr11 130093000 130093026 -18690446 + (A)n Simple_repeat Simple_repeat 1 26 0 347 300 45 93 chr11 130094032 130094172 -18689300 - MIR SINE MIR -13 249 125 1740 81 13 8 chr11 130094172 130094407 -18689065 + AluSq SINE Alu 1 236 -77 347 300 45 93 chr11 130094407 130094513 -18688959 - MIR SINE MIR -137 125 15 534 16 0 0 chr11 130095007 130095070 -18688402 + (TG)n Simple_repeat Simple_repeat 1 63 0 1995 146 0 7 chr11 130095735 130096044 -18687428 + AluSx SINE Alu 1 307 -5 449 261 0 17 chr11 130096324 130096443 -18687029 - MIR3 SINE MIR -7 201 85 204 283 0 0 chr11 130096575 130096621 -18686851 - MIR SINE MIR -124 138 93 183 42 0 0 chr11 130097465 130097489 -18685983 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 348 248 129 0 chr11 130097495 130097596 -18685876 - L2 LINE L2 -21 3292 3179 420 289 76 109 chr11 130097889 130097946 -18685526 - MLT1I LTR MaLR -6 403 346 1939 148 3 0 chr11 130097946 130098244 -18685228 + AluSx SINE Alu 1 299 -13 2312 86 0 3 chr11 130098244 130098545 -18684927 + AluSc SINE Alu 1 300 -9 420 289 76 109 chr11 130098545 130098880 -18684592 - MLT1I LTR MaLR -61 348 23 264 257 95 0 chr11 130099074 130099148 -18684324 - L2 LINE L2 -924 2390 2310 1012 228 18 0 chr11 130099206 130099434 -18684038 - MIR SINE MIR 0 262 31 211 170 0 38 chr11 130099485 130099538 -18683934 + GA-rich Low_complexity Low_complexity 1 51 0 294 259 12 24 chr11 130100232 130100317 -18683155 - MIR SINE MIR -30 232 149 196 167 191 0 chr11 130100440 130100482 -18682990 - L2 LINE L2 0 3313 3264 22 0 0 0 chr11 130101171 130101193 -18682279 + AT_rich Low_complexity Low_complexity 1 22 0 1288 237 79 88 chr11 130101214 130101448 -18682024 - L1MC4a LINE L1 -1773 6035 5800 2350 99 0 0 chr11 130101448 130101761 -18681711 - AluSq SINE Alu 0 313 1 1288 237 79 88 chr11 130101761 130102198 -18681274 - L1MC4a LINE L1 -2008 5800 5370 388 317 136 24 chr11 130106716 130107047 -18676425 + MER115 DNA AcHobo 1 368 -325 219 69 0 0 chr11 130110306 130110335 -18673137 + (TG)n Simple_repeat Simple_repeat 2 30 0 2559 214 66 76 chr11 130110491 130111263 -18672209 + MER21-int LTR ERV1 1895 2658 -1533 * 3750 211 56 81 chr11 130111262 130111575 -18671897 + MER21-int LTR ERV1 3025 3344 -847 2137 121 0 0 chr11 130111575 130111872 -18671600 + AluSq SINE Alu 1 297 -16 3750 211 56 81 chr11 130111872 130112106 -18671366 + MER21-int LTR ERV1 3344 3582 -609 2376 66 0 3 chr11 130112106 130112411 -18671061 + AluY SINE Alu 1 304 -7 3750 211 56 81 chr11 130112411 130112704 -18670768 + MER21-int LTR ERV1 3582 3833 -358 1952 131 14 3 chr11 130112704 130113001 -18670471 + AluSg SINE Alu 1 300 -10 3750 211 56 81 chr11 130113001 130113287 -18670185 + MER21-int LTR ERV1 3833 4125 -66 2307 100 3 0 chr11 130113619 130113930 -18669542 - AluSp SINE Alu -1 312 1 1602 164 0 72 chr11 130113932 130114250 -18669222 - AluJb SINE Alu -17 295 1 2084 102 3 7 chr11 130114618 130114913 -18668559 - AluSx SINE Alu -18 294 1 734 183 0 26 chr11 130114963 130115116 -18668356 + L1 LINE L1 3607 3755 -2391 1197 122 50 36 chr11 130115116 130115337 -18668135 + AluJb SINE Alu 89 312 0 1222 131 29 33 chr11 130115477 130115721 -18667751 + L1MCa LINE L1 1741 1983 -4443 1004 196 13 27 chr11 130115731 130115955 -18667517 - MER46A DNA MER2_type -15 221 1 652 156 78 28 chr11 130115987 130116149 -18667323 + L1MCa LINE L1 2057 2230 -4196 2166 109 0 25 chr11 130116149 130116470 -18667002 + AluSq SINE Alu 1 313 0 652 156 78 28 chr11 130116470 130116487 -18666985 + L1MCa LINE L1 2230 2245 -4181 664 89 9 9 chr11 130116658 130116770 -18666702 + L1M1 LINE L1 3029 3140 -4425 2976 233 104 32 chr11 130116841 130117715 -18665757 - MER21B-int LTR ERV1 -739 3452 2516 2496 234 36 36 chr11 130117708 130118459 -18665013 - MER21B-int LTR ERV1 -1487 5271 4522 * 2168 84 3 3 chr11 130118459 130118767 -18664705 - AluSp SINE Alu 0 308 1 2496 234 36 36 chr11 130118767 130118790 -18664682 - MER21B-int LTR ERV1 -2236 4522 1923 1270 212 47 22 chr11 130118866 130119187 -18664285 - MER21B-int LTR ERV1 -3844 347 19 1486 238 46 99 chr11 130119196 130119618 -18663854 - MER21B LTR ERV1 -124 739 359 1998 152 0 3 chr11 130119618 130119928 -18663544 - AluSx SINE Alu -3 309 1 1486 238 46 99 chr11 130119928 130120132 -18663340 - MER21B LTR ERV1 -504 359 146 1290 142 9 27 chr11 130120204 130120411 -18663061 + AluJb SINE Alu 87 291 -21 2287 113 0 0 chr11 130120411 130120721 -18662751 + AluSx SINE Alu 1 310 -2 1290 142 9 27 chr11 130120721 130120732 -18662740 + AluJb SINE Alu 291 301 -11 246 265 3 0 chr11 130120759 130120831 -18662641 - MER77 LTR ERV1 -471 134 22 2533 208 53 21 chr11 130120867 130121369 -18662103 + MER77 LTR ERV1 9 533 -72 2198 103 0 3 chr11 130121369 130121670 -18661802 + AluSc SINE Alu 1 300 -9 2533 208 53 21 chr11 130121670 130121735 -18661737 + MER77 LTR ERV1 533 594 -11 216 380 80 0 chr11 130121814 130122038 -18661434 + L2 LINE L2 2418 2659 -655 * 340 257 149 33 chr11 130122005 130122219 -18661253 + L2 LINE L2 2848 3086 -227 2057 95 3 7 chr11 130122282 130122589 -18660883 - AluSq SINE Alu 0 306 1 214 316 44 53 chr11 130122728 130122842 -18660630 - MIR SINE MIR -74 134 22 987 198 171 0 chr11 130123024 130123276 -18660196 + AluSx SINE Alu 5 299 -3 233 228 0 18 chr11 130123321 130123378 -18660094 + CT-rich Low_complexity Low_complexity 5 60 0 2307 79 0 0 chr11 130124107 130124399 -18659073 - AluSc SINE Alu -12 297 6 2308 88 3 3 chr11 130124674 130124980 -18658492 + AluSx SINE Alu 1 306 -6 369 249 169 11 chr11 130126193 130126382 -18657090 + L2 LINE L2 2863 3081 -232 2145 109 3 3 chr11 130126442 130126754 -18656718 - AluSq SINE Alu -1 312 1 198 267 58 35 chr11 130126893 130126979 -18656493 - MIR SINE MIR -74 134 47 227 307 129 14 chr11 130127217 130127357 -18656115 - MIR3 SINE MIR -31 177 22 217 242 110 11 chr11 130128212 130128307 -18655165 + MIR SINE MIR 58 160 -48 844 100 0 0 chr11 130128819 130128929 -18654543 + AluSq/x SINE Alu 1 110 -202 625 274 76 74 chr11 130129376 130129770 -18653702 + MLT1J LTR MaLR 109 503 -8 2235 94 0 0 chr11 130130318 130130617 -18652855 - AluSx SINE Alu -11 301 3 1250 133 0 20 chr11 130130653 130130849 -18652623 + AluSq SINE Alu 3 194 -119 364 258 31 21 chr11 130131352 130131449 -18652023 + MIR SINE MIR 94 191 -71 979 86 7 7 chr11 130131451 130131590 -18651882 + AluSq/x SINE Alu 1 139 -173 2106 110 3 3 chr11 130131591 130131883 -18651589 + AluSq SINE Alu 7 298 -15 2344 90 0 3 chr11 130132911 130133222 -18650250 + AluSp SINE Alu 1 310 -3 2215 106 3 0 chr11 130133222 130133524 -18649948 + AluSp SINE Alu 1 304 -9 543 141 0 10 chr11 130133747 130133837 -18649635 - L1MB3 LINE L1 -1 6182 6092 2244 109 0 0 chr11 130133837 130134139 -18649333 - AluSx SINE Alu -10 302 1 2190 113 0 0 chr11 130134178 130134479 -18648993 - AluSx SINE Alu -11 301 1 752 93 0 0 chr11 130134502 130134599 -18648873 + AluSg/x SINE Alu 195 291 -18 206 176 20 0 chr11 130134631 130134682 -18648790 + (TTTG)n Simple_repeat Simple_repeat 1 52 0 756 262 121 83 chr11 130135193 130135271 -18648201 + MLT1G1 LTR MaLR 11 85 -510 1396 152 119 4 chr11 130135271 130135548 -18647924 + AluSx SINE Alu 1 309 -3 756 262 121 83 chr11 130135548 130135964 -18647508 + MLT1G1 LTR MaLR 85 532 -63 1801 158 0 7 chr11 130135964 130136287 -18647185 - AluJb SINE Alu 0 321 1 756 262 121 83 chr11 130136287 130136354 -18647118 + MLT1G1 LTR MaLR 532 595 0 2459 68 0 0 chr11 130136427 130136736 -18646736 - AluY SINE Alu -1 310 2 2212 113 0 0 chr11 130136800 130137109 -18646363 - AluSx SINE Alu -3 309 1 685 178 67 15 chr11 130137240 130137375 -18646097 - FLAM_C SINE Alu 0 143 2 278 255 20 71 chr11 130137394 130137492 -18645980 - L2 LINE L2 -15 3298 3206 180 0 0 0 chr11 130137499 130137519 -18645953 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 678 146 10 0 chr11 130137528 130137631 -18645841 + U6 snRNA snRNA 1 104 -3 515 161 0 0 chr11 130137665 130137752 -18645720 - FLAM_A SINE Alu -15 127 41 447 316 57 10 chr11 130137781 130137990 -18645482 + MLT1K LTR MaLR 364 582 -6 2006 102 0 3 chr11 130138082 130138397 -18645075 + AluSc SINE Alu 1 314 0 333 209 15 0 chr11 130138397 130138464 -18645008 - MSTC LTR MaLR -360 68 1 1477 198 104 119 chr11 130138690 130139285 -18644187 - MLT1E1 LTR MaLR -48 606 21 2149 108 0 6 chr11 130139335 130139649 -18643823 - AluSx SINE Alu 0 312 1 381 273 28 83 chr11 130139678 130139894 -18643578 - L1ME LINE L1 -305 5816 5613 2140 81 24 7 chr11 130140044 130140341 -18643131 - AluSx SINE Alu -10 302 1 827 182 18 12 chr11 130140706 130140876 -18642596 - MER69A DNA AcHobo -3 174 4 210 37 0 0 chr11 130141038 130141065 -18642407 + (T)n Simple_repeat Simple_repeat 1 27 0 2165 103 0 13 chr11 130141180 130141491 -18641981 - AluSx SINE Alu -4 308 2 2008 106 17 10 chr11 130141501 130141802 -18641670 - AluSx SINE Alu -9 303 1 5274 80 17 34 chr11 130141802 130142619 -18640853 - L1M1 LINE L1 -4521 3044 2242 2939 204 13 38 chr11 130142619 130143253 -18640219 + MER21B-int LTR ERV1 3516 4133 -58 565 276 11 91 chr11 130143554 130143818 -18639654 + MER21B LTR ERV1 6 248 -615 6731 91 12 19 chr11 130143907 130144992 -18638480 - L1MA3 LINE L1 0 6305 5264 1981 87 60 0 chr11 130144997 130145263 -18638209 - AluSx SINE Alu -30 282 1 2225 101 0 0 chr11 130145399 130145697 -18637775 - AluSg SINE Alu -12 298 1 2852 83 95 0 chr11 130145701 130146110 -18637362 - LTR7 LTR ERV1 -2 448 1 2448 90 48 13 chr11 130146110 130146489 -18636983 - HERVH LTR ERV1 0 7713 7322 1399 118 20 0 chr11 130146487 130146691 -18636781 - HERVH LTR ERV1 -1894 5819 5612 * 4485 140 0 1 chr11 130146706 130147369 -18636103 - HERVH LTR ERV1 -2564 5149 4488 3544 95 4 8 chr11 130147371 130147875 -18635597 - HERVH LTR ERV1 -3720 3993 3492 903 142 20 0 chr11 130147865 130148013 -18635459 - HERVH LTR ERV1 -4423 3290 3140 * 12041 91 14 7 chr11 130148007 130149682 -18633790 - HERVH LTR ERV1 -4726 2987 1301 8382 35 2 0 chr11 130149682 130150649 -18632823 - LTR5 LTR ERVK 0 969 1 432 74 11 168 chr11 130150649 130150744 -18632728 - SVA Other Other -450 936 857 62003 30 3 0 chr11 130150744 130157873 -18625599 - HERVK LTR ERVK -95 7148 1 8343 39 1 0 chr11 130157873 130158841 -18624631 - LTR5 LTR ERVK 0 969 1 8397 88 51 23 chr11 130158841 130160110 -18623362 - HERVH LTR ERV1 -6408 1305 1 2862 88 93 0 chr11 130160112 130160521 -18622951 - LTR7 LTR ERV1 -2 448 2 784 206 13 0 chr11 130160528 130160683 -18622789 + MER4C LTR ERV1 301 457 -8 207 0 0 0 chr11 130160692 130160715 -18622757 + (T)n Simple_repeat Simple_repeat 1 23 0 945 89 0 0 chr11 130160819 130160942 -18622530 - AluSq/x SINE Alu -190 123 1 519 195 0 0 chr11 130160963 130161050 -18622422 + Tigger3(Golem) DNA MER2_type 2 88 -2941 1912 184 112 3 chr11 130161757 130162133 -18621339 + MER47B DNA MER2_type 1 417 -1 2051 115 7 3 chr11 130162208 130162504 -18620968 - AluSg SINE Alu -13 297 1 267 293 125 32 chr11 130162514 130162794 -18620678 + L1ME4a LINE L1 5634 5939 -182 2230 94 0 13 chr11 130163160 130163468 -18620004 - AluSc SINE Alu -4 305 2 471 36 0 0 chr11 130163469 130163525 -18619947 + MER4B LTR ERV1 555 610 0 1414 167 11 30 chr11 130163615 130163885 -18619587 - AluJo SINE Alu -9 303 39 3550 110 52 56 chr11 130163887 130163923 -18619549 + MER41B LTR ERV1 1 36 -599 2138 112 0 3 chr11 130163923 130164228 -18619244 - AluSg SINE Alu -6 304 1 3550 110 52 56 chr11 130164228 130164302 -18619170 + MER41B LTR ERV1 36 109 -526 2201 76 10 3 chr11 130164302 130164592 -18618880 - AluSq SINE Alu -21 292 1 3550 110 52 56 chr11 130164592 130165118 -18618354 + MER41B LTR ERV1 109 635 0 738 106 18 0 chr11 130165118 130165231 -18618241 + AluJb SINE Alu 193 307 -5 24 53 0 0 chr11 130165232 130165270 -18618202 + GC_rich Low_complexity Low_complexity 1 38 0 207 0 0 0 chr11 130165382 130165405 -18618067 + (A)n Simple_repeat Simple_repeat 1 23 0 1089 147 175 28 chr11 130165406 130165658 -18617814 + AluJb SINE Alu 1 289 -13 565 146 80 7 chr11 130165672 130165809 -18617663 - MER69 DNA AcHobo -370 2156 2010 2132 113 3 0 chr11 130165843 130166145 -18617327 - AluSp SINE Alu -10 303 1 792 111 8 17 chr11 130166150 130166267 -18617205 - FLAM_C SINE Alu -14 129 14 997 251 28 39 chr11 130166270 130166553 -18616919 - MER69 DNA AcHobo -1952 574 295 1293 108 138 13 chr11 130166561 130166792 -18616680 + AluSg1 SINE Alu 2 261 -48 216 0 0 0 chr11 130166800 130166824 -18616648 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 446 254 112 35 chr11 130166825 130166994 -18616478 - MER69 DNA AcHobo -2222 304 123 1294 216 23 23 chr11 130167025 130167331 -18616141 + AluJo SINE Alu 1 306 -6 1892 133 3 10 chr11 130167335 130167628 -18615844 + AluSx SINE Alu 1 291 -21 1509 157 68 10 chr11 130167635 130167769 -18615703 + AluSx SINE Alu 1 126 -186 2207 93 10 0 chr11 130167769 130168070 -18615402 + AluSp SINE Alu 1 304 -9 1509 157 68 10 chr11 130168070 130168229 -18615243 + AluSx SINE Alu 126 311 -1 2135 98 3 0 chr11 130168238 130168535 -18614937 + AluSq SINE Alu 5 302 -11 816 223 12 0 chr11 130168535 130168701 -18614771 + LTR39 LTR ERV1 616 783 0 348 22 0 4 chr11 130168795 130168842 -18614630 + MER41B LTR ERV1 45 90 -464 1048 151 0 0 chr11 130168843 130169015 -18614457 + AluSg/x SINE Alu 139 310 -2 1369 95 9 29 chr11 130169061 130169271 -18614201 - MER41B LTR ERV1 -429 206 1 2924 129 15 29 chr11 130169509 130169871 -18613601 + MER41B LTR ERV1 163 518 -117 2125 69 52 0 chr11 130169871 130170162 -18613310 - AluY SINE Alu -5 306 1 2924 129 15 29 chr11 130170162 130170279 -18613193 + MER41B LTR ERV1 518 635 0 849 190 6 40 chr11 130170377 130170530 -18612942 - AluJb SINE Alu -25 287 130 2123 99 0 35 chr11 130170530 130170843 -18612629 - AluSc SINE Alu -7 302 1 1943 117 25 3 chr11 130170843 130171126 -18612346 - AluSg SINE Alu -21 289 1 849 190 6 40 chr11 130171126 130171145 -18612327 - AluJb SINE Alu -180 132 120 2205 112 3 0 chr11 130171325 130171637 -18611835 - AluSq SINE Alu 0 313 1 1876 133 40 0 chr11 130171678 130171978 -18611494 - AluSx SINE Alu 0 312 1 187 176 29 0 chr11 130172011 130172045 -18611427 - MER5A DNA MER1_type 0 189 155 1206 111 6 0 chr11 130172045 130172217 -18611255 + AluSg/x SINE Alu 116 288 -22 23 0 0 0 chr11 130172221 130172244 -18611228 + AT_rich Low_complexity Low_complexity 1 23 0 2263 83 17 0 chr11 130172453 130172755 -18610717 - AluSq SINE Alu -6 307 1 2295 88 0 0 chr11 130173055 130173351 -18610121 + AluSq SINE Alu 5 300 -13 2336 89 0 0 chr11 130173351 130173654 -18609818 + AluSq SINE Alu 1 304 -9 3586 94 6 10 chr11 130173708 130174210 -18609262 + L1PA14 LINE L1 5662 6161 0 2949 196 55 12 chr11 130174210 130174887 -18608585 + L1MC4 LINE L1 6686 7486 -509 388 241 56 2 chr11 130174952 130175071 -18608401 + L1MC4 LINE L1 7284 7474 -402 2148 97 0 7 chr11 130175107 130175406 -18608066 + AluY SINE Alu 7 303 -8 386 173 13 0 chr11 130175453 130175528 -18607944 + L1MB7 LINE L1 6039 6114 -70 1753 136 21 11 chr11 130175534 130175821 -18607651 + AluSx SINE Alu 7 296 -16 2298 89 0 6 chr11 130175831 130176145 -18607327 + AluSq SINE Alu 2 313 0 339 191 143 24 chr11 130176620 130176704 -18606768 - LTR33 LTR ERVL 0 521 428 249 252 46 3 chr11 130176879 130177028 -18606444 - LTR33 LTR ERVL -315 206 10 1271 181 142 0 chr11 130177234 130177488 -18605984 - AluSg SINE Alu -10 290 1 1636 215 20 34 chr11 130177496 130177854 -18605618 + MLT1A1 LTR MaLR 11 363 -2 1349 314 70 13 chr11 130177912 130178072 -18605400 - ERVL LTR ERVL -384 5380 5231 839 255 49 78 chr11 130178072 130178480 -18604992 + MSTD LTR MaLR 1 396 0 1349 314 70 13 chr11 130178480 130178804 -18604668 - ERVL LTR ERVL -533 5231 4849 2957 121 52 4 chr11 130178804 130179268 -18604204 + LTR19A LTR ERV1 1 486 0 1349 314 70 13 chr11 130179268 130179409 -18604063 - ERVL LTR ERVL -915 4849 4718 494 276 35 14 chr11 130179444 130179589 -18603883 - ERVL LTR ERVL -3668 2096 1949 488 178 246 0 chr11 130179592 130179710 -18603762 + MER69 DNA AcHobo 1 147 -2379 2046 117 7 7 chr11 130179720 130180028 -18603444 - AluSp SINE Alu -1 312 5 787 164 119 0 chr11 130180037 130180196 -18603276 - AluJo/FRAM SINE Alu -1 311 134 1923 132 7 3 chr11 130180196 130180499 -18602973 - AluSp SINE Alu -9 304 1 431 270 63 0 chr11 130180574 130180685 -18602787 - MIR SINE MIR -121 141 24 2070 113 0 3 chr11 130180685 130180976 -18602496 - AluSx SINE Alu -22 290 1 752 229 47 67 chr11 130180976 130181213 -18602259 - MER21-int LTR ERV1 -618 3573 3305 2114 121 0 0 chr11 130181213 130181510 -18601962 - AluSq SINE Alu -16 297 1 752 229 47 67 chr11 130181510 130181638 -18601834 - MER21-int LTR ERV1 -886 3305 3176 518 296 0 25 chr11 130181664 130181823 -18601649 - MER21-int LTR ERV1 -1012 3179 3025 * 2476 199 73 55 chr11 130181822 130182455 -18601017 - MER21-int LTR ERV1 -1533 2658 2015 2241 88 0 0 chr11 130182570 130182865 -18600607 - AluY SINE Alu -16 295 1 287 295 121 32 chr11 130182875 130183156 -18600316 + L1ME4a LINE L1 5634 5939 -182 1904 102 0 43 chr11 130183524 130183827 -18599645 - AluY SINE Alu 0 311 22 1912 184 112 3 chr11 130184713 130185089 -18598383 + MER47B DNA MER2_type 1 417 -1 1922 124 7 7 chr11 130185149 130185460 -18598012 - AluSg SINE Alu 0 311 1 320 255 129 78 chr11 130185499 130185754 -18597718 + L2 LINE L2 3033 3300 -13 242 0 0 0 chr11 130185914 130185943 -18597529 + AluSx SINE Alu 1 29 -272 1613 137 6 54 chr11 130186242 130186556 -18596916 + AluSx SINE Alu 14 312 0 2104 102 0 7 chr11 130186630 130186924 -18596548 + AluSc SINE Alu 1 292 -17 260 301 87 48 chr11 130186963 130187066 -18596406 - L3 LINE CR1 -1436 141 35 1744 154 13 7 chr11 130187239 130187538 -18595934 - AluJo SINE Alu -11 301 1 1508 147 45 14 chr11 130187570 130187856 -18595616 + AluSg SINE Alu 12 295 -15 1314 122 168 15 chr11 130188306 130188568 -18594904 - AluSx SINE Alu 0 302 1 1882 129 17 0 chr11 130188571 130188858 -18594614 - AluSx SINE Alu -20 292 1 525 139 0 0 chr11 130188884 130188963 -18594509 + AluJ/FLAM SINE Alu 1 79 -233 313 193 0 91 chr11 130188971 130189059 -18594413 - Charlie8 DNA MER1_type -2290 127 48 258 175 0 0 chr11 130189439 130189479 -18593993 + MER2 DNA MER2_type 2 41 -304 203 239 56 56 chr11 130189500 130189571 -18593901 - MIR SINE MIR -79 183 113 421 209 7 4 chr11 130189593 130189745 -18593727 + MER20 DNA MER1_type 6 214 -5 2279 87 3 13 chr11 130189887 130190185 -18593287 + AluSx SINE Alu 1 295 -17 204 40 0 0 chr11 130190471 130190496 -18592976 + (A)n Simple_repeat Simple_repeat 1 25 0 932 314 49 16 chr11 130190522 130191009 -18592463 - L2 LINE L2 -338 2976 2474 1866 162 7 3 chr11 130191099 130191401 -18592071 + AluSx SINE Alu 1 303 -9 391 297 0 0 chr11 130191413 130191514 -18591958 - L2 LINE L2 -9 3263 3163 2016 96 20 10 chr11 130191934 130192235 -18591237 + AluSg SINE Alu 1 304 -6 203 171 0 0 chr11 130192832 130192873 -18590599 + T-rich Low_complexity Low_complexity 1 41 0 2299 82 3 10 chr11 130193415 130193718 -18589754 + AluSx SINE Alu 2 302 -10 242 164 18 0 chr11 130194238 130194293 -18589179 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 698 113 0 0 chr11 130194325 130194422 -18589050 - AluSg/x SINE Alu -18 294 198 2295 112 0 0 chr11 130194445 130194748 -18588724 + AluSx SINE Alu 1 303 -9 264 218 35 46 chr11 130195584 130195671 -18587801 + LTR33 LTR ERVL 434 519 -2 2309 94 3 7 chr11 130195975 130196274 -18587198 + AluSq SINE Alu 1 298 -15 2245 105 0 3 chr11 130197302 130197597 -18585875 + AluSx SINE Alu 1 294 -18 242 164 18 0 chr11 130197629 130197684 -18585788 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 974 211 66 150 chr11 130198249 130198274 -18585198 + MLT1H LTR MaLR 80 106 -443 1845 122 101 0 chr11 130198274 130198552 -18584920 + AluSx SINE Alu 1 306 -6 974 211 66 150 chr11 130198552 130198970 -18584502 + MLT1H LTR MaLR 106 478 -71 1914 155 0 7 chr11 130198970 130199281 -18584191 - AluJb SINE Alu 0 309 1 974 211 66 150 chr11 130199281 130199348 -18584124 + MLT1H LTR MaLR 478 549 0 2517 78 0 0 chr11 130199421 130199730 -18583742 - AluY SINE Alu -1 310 2 2298 117 0 0 chr11 130199794 130200103 -18583369 - AluSx SINE Alu -3 309 1 658 178 67 15 chr11 130200234 130200369 -18583103 - FLAM_C SINE Alu 0 143 2 261 300 0 64 chr11 130200390 130200500 -18582972 - L2 LINE L2 -19 3294 3192 679 146 10 0 chr11 130200522 130200625 -18582847 + U6 snRNA snRNA 1 104 -3 513 161 0 0 chr11 130200659 130200746 -18582726 - FLAM_A SINE Alu -15 127 41 463 311 57 10 chr11 130200775 130200984 -18582488 + MLT1K LTR MaLR 364 582 -6 2126 102 0 3 chr11 130201076 130201391 -18582081 + AluSc SINE Alu 1 314 0 332 209 15 0 chr11 130201391 130201458 -18582014 - MSTC LTR MaLR -360 68 1 1482 195 104 119 chr11 130201686 130202281 -18581191 - MLT1E1 LTR MaLR -48 606 21 2057 135 0 10 chr11 130202324 130202636 -18580836 - AluSx SINE Alu -3 309 1 357 286 23 96 chr11 130202665 130202885 -18580587 - L1ME LINE L1 -305 5816 5613 2274 78 24 7 chr11 130203035 130203331 -18580141 - AluSx SINE Alu -11 301 1 825 182 18 12 chr11 130203696 130203866 -18579606 - MER69A DNA AcHobo -3 174 4 189 0 0 0 chr11 130204012 130204033 -18579439 + (TC)n Simple_repeat Simple_repeat 2 22 0 216 0 0 0 chr11 130204033 130204057 -18579415 + (T)n Simple_repeat Simple_repeat 1 24 0 207 0 0 0 chr11 130204187 130204210 -18579262 + (A)n Simple_repeat Simple_repeat 1 23 0 584 261 69 78 chr11 130204211 130204694 -18578778 + MER34B LTR ERV1 50 563 -2 1247 273 19 55 chr11 130204694 130205115 -18578357 + MLT2E LTR ERVL 123 528 -100 2095 126 0 13 chr11 130205200 130205501 -18577971 - AluSx SINE Alu -15 297 1 2187 122 0 10 chr11 130205509 130205812 -18577660 - AluSx SINE Alu -12 300 1 2210 117 0 0 chr11 130205824 130206114 -18577358 - AluSc SINE Alu -19 290 1 3198 83 7 0 chr11 130206115 130206538 -18576934 - THE1C-int LTR MaLR -1153 427 2 1977 115 95 14 chr11 130206539 130206886 -18576586 - THE1C LTR MaLR 0 375 1 1115 106 90 17 chr11 130206891 130207120 -18576352 + L1MCa LINE L1 1559 1888 -4538 2038 126 18 0 chr11 130207120 130207405 -18576067 + AluSg SINE Alu 1 290 -20 264 218 35 46 chr11 130207955 130208042 -18575430 + LTR33 LTR ERVL 434 519 -2 2274 106 3 7 chr11 130208346 130208647 -18574825 + AluSq SINE Alu 1 300 -13 4669 246 106 26 chr11 130208716 130208931 -18574541 + ERVL LTR ERVL 1580 1776 -3988 2368 65 0 3 chr11 130208931 130209222 -18574250 - AluSc SINE Alu -19 290 1 4669 246 106 26 chr11 130209222 130210556 -18572916 + ERVL LTR ERVL 1776 3332 -2432 918 108 0 23 chr11 130210580 130210710 -18572762 - FLAM_C SINE Alu -16 127 1 675 268 0 0 chr11 130210712 130210850 -18572622 + ERVL LTR ERVL 3322 3459 -2305 1340 252 79 3 chr11 130210854 130211417 -18572055 + ERVL LTR ERVL 4829 5484 -148 2272 122 0 0 chr11 130211450 130211761 -18571711 + AluSx SINE Alu 1 311 -1 198 0 0 0 chr11 130211957 130211979 -18571493 + (A)n Simple_repeat Simple_repeat 1 22 0 2229 104 0 7 chr11 130212418 130212706 -18570766 + AluSx SINE Alu 1 286 -26 1934 115 58 7 chr11 130212728 130213006 -18570466 + AluSx SINE Alu 1 292 -20 1651 160 0 51 chr11 130213138 130213450 -18570022 - AluJo SINE Alu -5 307 12 2091 102 51 17 chr11 130213512 130213807 -18569665 - AluSp SINE Alu -8 305 1 2310 88 3 0 chr11 130213807 130214104 -18569368 - AluSx SINE Alu -6 306 9 478 292 96 81 chr11 130214490 130214786 -18568686 + L1ME4a LINE L1 5313 5603 -518 2381 88 0 0 chr11 130214786 130215082 -18568390 - AluY SINE Alu -15 296 1 478 292 96 81 chr11 130215082 130215418 -18568054 + L1ME4a LINE L1 5603 5955 -166 2346 112 0 0 chr11 130215742 130216054 -18567418 - AluSx SINE Alu 0 312 1 514 175 0 0 chr11 130216075 130216155 -18567317 + Tigger3(Golem) DNA MER2_type 2 81 -2948 1919 184 112 3 chr11 130216869 130217245 -18566227 + MER47B DNA MER2_type 1 417 -1 2068 127 7 3 chr11 130217305 130217617 -18565855 - AluSx SINE Alu 0 313 1 189 0 0 0 chr11 130217733 130217754 -18565718 + (T)n Simple_repeat Simple_repeat 1 21 0 188 171 0 0 chr11 130217755 130217790 -18565682 - MIR SINE MIR -72 190 156 2111 108 24 0 chr11 130217969 130218279 -18565193 - AluSp SINE Alu 0 313 1 389 270 63 0 chr11 130218354 130218465 -18565007 - MIR SINE MIR -121 141 24 1934 132 0 20 chr11 130218465 130218761 -18564711 - AluSx SINE Alu -22 290 1 2446 76 0 10 chr11 130218776 130219080 -18564392 - AluSg SINE Alu -9 301 1 937 163 12 6 chr11 130219153 130219313 -18564159 + FRAM SINE Alu 1 160 -16 1097 179 63 5 chr11 130220004 130220211 -18563261 + MER46A DNA MER2_type 18 236 0 2147 114 0 0 chr11 130220262 130220543 -18562929 + AluSg SINE Alu 1 281 -29 2083 106 27 13 chr11 130220955 130221256 -18562216 + AluSg SINE Alu 1 305 -5 1525 226 57 3 chr11 130221376 130221690 -18561782 - MER82 DNA MER2_type -2 651 321 2197 138 0 0 chr11 130221729 130222034 -18561438 + AluSq SINE Alu 1 305 -8 230 298 65 40 chr11 130222545 130222669 -18560803 + MIR SINE MIR 67 193 -69 771 173 99 31 chr11 130222751 130222942 -18560530 - MER3 DNA MER1_type -5 204 1 1868 109 15 15 chr11 130223615 130223881 -18559591 - AluSq SINE Alu -47 266 1 1496 172 97 4 chr11 130225197 130225464 -18558008 - AluJo SINE Alu -15 297 6 2000 120 13 20 chr11 130225502 130225801 -18557671 - AluSx SINE Alu -9 303 7 2494 73 0 3 chr11 130225977 130226277 -18557195 + AluSc SINE Alu 1 299 -10 2092 107 0 4 chr11 130226289 130226569 -18556903 + AluSq SINE Alu 6 284 -29 857 152 8 0 chr11 130226675 130226807 -18556665 - FLAM_C SINE Alu 0 133 1 883 136 0 0 chr11 130226998 130227123 -18556349 - AluSq/x SINE Alu -187 125 1 285 29 0 0 chr11 130228528 130228562 -18554910 + (TA)n Simple_repeat Simple_repeat 2 35 0 294 29 0 0 chr11 130230229 130230264 -18553208 + (T)n Simple_repeat Simple_repeat 1 35 0 28 0 0 0 chr11 130230886 130230914 -18552558 + AT_rich Low_complexity Low_complexity 1 28 0 1532 176 154 72 chr11 130232348 130232376 -18551096 + L1M4 LINE L1 4408 4432 -1714 1290 211 81 25 chr11 130232376 130232698 -18550774 - MER2 DNA MER2_type -1 343 4 1532 176 154 72 chr11 130232698 130232904 -18550568 + L1M4 LINE L1 4432 4620 -1526 538 214 62 0 chr11 130232904 130233016 -18550456 + FLAM_A SINE Alu 1 119 -14 1532 176 154 72 chr11 130233016 130233321 -18550151 + L1M4 LINE L1 4620 5008 -1138 1950 168 0 0 chr11 130233321 130233618 -18549854 + AluSx SINE Alu 1 297 -15 1532 176 154 72 chr11 130233618 130233701 -18549771 + L1M4 LINE L1 5008 5083 -1063 974 183 35 117 chr11 130233856 130233958 -18549514 + AluJo SINE Alu 2 111 -191 369 0 0 0 chr11 130233958 130233999 -18549473 + (TG)n Simple_repeat Simple_repeat 2 42 0 974 183 35 117 chr11 130233999 130234061 -18549411 + AluJo SINE Alu 111 177 -125 2126 101 7 19 chr11 130234061 130234195 -18549277 + AluSx SINE Alu 1 135 -177 2462 91 0 0 chr11 130234195 130234503 -18548969 + AluSg SINE Alu 1 308 -2 2126 101 7 19 chr11 130234503 130234676 -18548796 + AluSx SINE Alu 135 304 -8 974 183 35 117 chr11 130234676 130234827 -18548645 + AluJo SINE Alu 177 292 -10 264 218 35 46 chr11 130235377 130235464 -18548008 + LTR33 LTR ERVL 434 519 -2 2160 116 3 10 chr11 130235768 130236070 -18547402 + AluSq SINE Alu 1 300 -13 2368 65 0 3 chr11 130236353 130236644 -18546828 - AluSc SINE Alu -19 290 1 2235 221 133 24 chr11 130236644 130237268 -18546204 + ERVL LTR ERVL 1898 2589 -3175 1247 153 5 0 chr11 130237443 130237633 -18545839 - AluJb SINE Alu 0 312 122 29 0 0 0 chr11 130237633 130237662 -18545810 + AT_rich Low_complexity Low_complexity 1 29 0 1750 148 32 14 chr11 130237662 130237825 -18545647 - AluJo SINE Alu -24 288 129 2241 94 0 41 chr11 130237825 130238145 -18545327 - AluSx SINE Alu -5 307 1 2241 119 3 0 chr11 130238146 130238440 -18545032 - AluSq SINE Alu -18 295 1 1750 148 32 14 chr11 130238440 130238557 -18544915 - AluJo SINE Alu -182 130 1 22 0 0 0 chr11 130238744 130238766 -18544706 + AT_rich Low_complexity Low_complexity 1 22 0 2349 62 0 26 chr11 130238781 130239085 -18544387 - AluY SINE Alu -15 296 1 1903 156 0 10 chr11 130239085 130239380 -18544092 - AluJo SINE Alu -20 292 1 230 229 84 24 chr11 130239963 130240046 -18543426 + MIR SINE MIR 102 189 -73 234 0 0 0 chr11 130240051 130240077 -18543395 + (TA)n Simple_repeat Simple_repeat 2 27 0 714 68 126 0 chr11 130240190 130240293 -18543179 - AluSg SINE Alu -193 117 2 583 119 0 0 chr11 130240643 130240727 -18542745 - AluJ/FRAM SINE Alu -12 300 217 778 173 0 8 chr11 130240728 130240855 -18542617 - AluJo/FLAM SINE Alu -185 127 2 2147 118 3 17 chr11 130240888 130241185 -18542287 + AluSx SINE Alu 1 293 -19 2094 114 7 0 chr11 130241232 130241543 -18541929 - AluSg SINE Alu 0 313 1 702 264 108 14 chr11 130241549 130241944 -18541528 + MLT2E LTR ERVL 141 627 -1 731 335 30 22 chr11 130242135 130242502 -18540970 + ERVL-E LTR ERVL 282 651 -5113 608 105 12 12 chr11 130242502 130242588 -18540884 - MER30 DNA MER1_type 0 230 145 1403 257 35 31 chr11 130242690 130243142 -18540330 + HAL1 LINE L1 1395 1848 -659 244 178 0 0 chr11 130243144 130243189 -18540283 - MLT1K LTR MaLR -20 568 524 1912 147 3 28 chr11 130243199 130243302 -18540170 + AluSx SINE Alu 1 105 -207 1891 123 78 28 chr11 130243302 130243659 -18539813 + THE1C LTR MaLR 1 375 0 1912 147 3 28 chr11 130243659 130243875 -18539597 + AluSx SINE Alu 105 312 0 234 305 136 0 chr11 130244627 130244745 -18538727 - MIR SINE MIR -81 181 48 1111 157 92 0 chr11 130244753 130244970 -18538502 + L1MB8 LINE L1 5489 5725 -453 2039 153 67 12 chr11 130245200 130245619 -18537853 + L1MB8 LINE L1 5732 6173 -5 346 266 46 9 chr11 130245979 130246088 -18537384 + LTR67 LTR ERVL 428 540 -17 2279 71 0 11 chr11 130246249 130246557 -18536915 + AluY SINE Alu 1 305 0 581 235 0 0 chr11 130246670 130246785 -18536687 + FLAM_C SINE Alu 2 116 -27 1296 176 180 0 chr11 130247429 130247685 -18535787 - AluJo SINE Alu 0 302 1 566 84 0 93 chr11 130247943 130247993 -18535479 + L1PB1 LINE L1 6053 6089 -62 2087 128 0 3 chr11 130247993 130248289 -18535183 + AluSx SINE Alu 1 295 -17 566 84 0 93 chr11 130248289 130248345 -18535127 + L1PB1 LINE L1 6089 6149 -2 208 272 88 44 chr11 130248575 130248689 -18534783 - MIR SINE MIR -46 216 98 1239 214 14 54 chr11 130248809 130249103 -18534369 + AluJo SINE Alu 1 282 -30 508 246 144 31 chr11 130249172 130249367 -18534105 - MIR SINE MIR -3 259 43 192 313 104 0 chr11 130249433 130249500 -18533972 - L2 LINE L2 -43 3229 3156 2131 131 3 3 chr11 130249513 130249819 -18533653 + AluSc SINE Alu 1 306 -3 1510 234 126 30 chr11 130250345 130250565 -18532907 + L1MC4 LINE L1 6658 6855 -1187 1973 164 3 3 chr11 130250565 130250875 -18532597 + AluSx SINE Alu 1 310 -2 1510 234 126 30 chr11 130250875 130251192 -18532280 + L1MC4 LINE L1 6855 7247 -795 636 162 370 7 chr11 130251297 130251451 -18532021 - MER20 DNA MER1_type -4 215 6 216 235 49 86 chr11 130251464 130251545 -18531927 + MIR SINE MIR 106 183 -79 1197 248 89 75 chr11 130251568 130251859 -18531613 + L1MC4 LINE L1 7261 7546 -496 1540 158 90 7 chr11 130251859 130252137 -18531335 + AluJb SINE Alu 1 301 -11 1197 248 89 75 chr11 130252137 130252499 -18530973 + L1MC4 LINE L1 7546 7923 -119 2075 97 13 13 chr11 130252796 130253094 -18530378 + AluSx SINE Alu 1 298 -14 1688 145 97 24 chr11 130253379 130253669 -18529803 - AluJb SINE Alu -1 311 1 1654 152 13 51 chr11 130253672 130253987 -18529485 - AluSx SINE Alu -9 303 1 23 0 0 0 chr11 130254884 130254907 -18528565 + AT_rich Low_complexity Low_complexity 1 23 0 1669 163 66 26 chr11 130254975 130255324 -18528148 - MER89 LTR ERV1 0 559 197 291 176 135 0 chr11 130255302 130255376 -18528096 - MER89 LTR ERV1 -475 84 1 * 234 0 0 0 chr11 130255846 130255872 -18527600 + (A)n Simple_repeat Simple_repeat 1 26 0 1961 85 105 10 chr11 130255875 130256170 -18527302 - MER4B LTR ERV1 -287 323 1 1455 136 41 0 chr11 130256425 130256646 -18526826 + MER30 DNA MER1_type 1 230 0 858 107 19 75 chr11 130256741 130256899 -18526573 + LTR39 LTR ERV1 1 149 -634 701 124 92 203 chr11 130256899 130257278 -18526194 + MER4C LTR ERV1 1 161 -304 2506 73 0 0 chr11 130257278 130257580 -18525892 - AluSx SINE Alu -10 302 1 701 124 92 203 chr11 130257580 130257716 -18525756 + MER4C LTR ERV1 161 311 -154 2355 101 0 0 chr11 130257719 130258017 -18525455 - AluSg SINE Alu -12 298 1 2880 76 95 0 chr11 130258021 130258430 -18525042 - LTR7 LTR ERV1 -2 448 1 2455 90 48 13 chr11 130258430 130258809 -18524663 - HERVH LTR ERV1 0 7713 7322 1400 118 20 0 chr11 130258807 130259011 -18524461 - HERVH LTR ERV1 -1894 5819 5612 * 4511 137 0 1 chr11 130259026 130259689 -18523783 - HERVH LTR ERV1 -2564 5149 4488 3509 97 4 8 chr11 130259691 130260195 -18523277 - HERVH LTR ERV1 -3720 3993 3492 830 152 41 0 chr11 130260185 130260330 -18523142 - HERVH LTR ERV1 -4423 3290 3140 * 20388 88 30 16 chr11 130260324 130261999 -18521473 - HERVH LTR ERV1 -4726 2987 1250 8760 38 1 0 chr11 130261999 130262967 -18520505 - LTR5 LTR ERVK 0 969 1 20388 88 30 16 chr11 130262967 130264236 -18519236 - HERVH LTR ERV1 -6463 1250 1 2852 88 93 0 chr11 130264238 130264647 -18518825 - LTR7 LTR ERV1 -2 448 2 788 206 13 0 chr11 130264654 130264809 -18518663 + MER4C LTR ERV1 301 457 -8 216 0 0 0 chr11 130264818 130264842 -18518630 + (T)n Simple_repeat Simple_repeat 1 24 0 1429 135 22 4 chr11 130264983 130265213 -18518259 - AluSp SINE Alu -79 234 1 2014 148 0 3 chr11 130265228 130265539 -18517933 - AluY SINE Alu -1 310 1 753 258 115 63 chr11 130265542 130265856 -18517616 - L1ME4a LINE L1 -293 5828 5476 2294 104 0 3 chr11 130265856 130266153 -18517319 - AluSg1 SINE Alu -13 296 1 753 258 115 63 chr11 130266153 130266310 -18517162 - L1ME4a LINE L1 -645 5476 5328 1660 164 11 14 chr11 130266638 130266918 -18516554 + AluJb SINE Alu 1 279 -33 417 20 0 0 chr11 130266918 130266968 -18516504 + (CA)n Simple_repeat Simple_repeat 1 50 0 2282 102 0 3 chr11 130267764 130268059 -18515413 - AluSx SINE Alu -18 294 1 2190 99 0 11 chr11 130268952 130269267 -18514205 + AluSg SINE Alu 1 312 0 25 0 0 0 chr11 130269649 130269674 -18513798 + AT_rich Low_complexity Low_complexity 1 25 0 467 282 88 0 chr11 130269679 130269860 -18513612 + MIR SINE MIR 10 206 -56 1820 143 56 3 chr11 130269943 130270229 -18513243 - AluJb SINE Alu -11 301 1 249 255 226 10 chr11 130270481 130270583 -18512889 - L2 LINE L2 0 3272 3149 232 176 78 0 chr11 130270946 130270997 -18512475 + L1ME3A LINE L1 5565 5619 -551 243 184 11 35 chr11 130271014 130271101 -18512371 + (TTATA)n Simple_repeat Simple_repeat 4 88 0 2180 110 3 0 chr11 130271137 130271428 -18512044 - AluSx SINE Alu -20 292 1 904 207 101 4 chr11 130271428 130271655 -18511817 + L1ME3A LINE L1 5729 5977 -193 1950 118 11 4 chr11 130271657 130271968 -18511504 - AluY SINE Alu 0 313 1 247 213 66 0 chr11 130272177 130272238 -18511234 + L2 LINE L2 3182 3246 -67 327 172 0 0 chr11 130272284 130272342 -18511130 + L2 LINE L2 3250 3307 -6 902 223 25 0 chr11 130272362 130272564 -18510908 + MIR SINE MIR 1 207 -55 653 222 143 64 chr11 130272808 130273074 -18510398 + L1M4 LINE L1 4662 4948 -1198 2331 109 0 0 chr11 130273240 130273543 -18509929 - AluSx SINE Alu -9 303 1 181 209 47 0 chr11 130273544 130273587 -18509885 + MIR SINE MIR 100 144 -118 1640 166 32 11 chr11 130273604 130273887 -18509585 + AluJo SINE Alu 12 300 -12 262 286 51 73 chr11 130274185 130274286 -18509186 + L2 LINE L2 1177 1274 -2040 696 239 6 39 chr11 130274286 130274466 -18509006 + MER5B DNA MER1_type 4 177 -1 262 286 51 73 chr11 130274466 130274542 -18508930 + L2 LINE L2 1274 1350 -1964 24 0 0 0 chr11 130274725 130274749 -18508723 + AT_rich Low_complexity Low_complexity 1 24 0 208 352 120 16 chr11 130275028 130275153 -18508319 + L2 LINE L2 2621 2758 -556 259 211 70 0 chr11 130275323 130275394 -18508078 + L2 LINE L2 3013 3088 -225 356 263 0 0 chr11 130275594 130275670 -18507802 - MER94 DNA DNA -54 80 5 237 65 0 0 chr11 130275755 130275786 -18507686 + (T)n Simple_repeat Simple_repeat 1 31 0 198 0 0 0 chr11 130275955 130275977 -18507495 + (A)n Simple_repeat Simple_repeat 1 22 0 300 232 0 32 chr11 130276009 130276085 -18507387 - MIR SINE MIR -123 85 13 2398 97 0 3 chr11 130276983 130277294 -18506178 - AluSg SINE Alu 0 310 1 2600 58 16 3 chr11 130277678 130277987 -18505485 - AluSq SINE Alu 0 313 1 351 264 39 52 chr11 130278139 130278294 -18505178 - L2 LINE L2 0 3313 3161 192 339 78 37 chr11 130278556 130278774 -18504698 - L2 LINE L2 -454 2860 2634 445 311 106 29 chr11 130278903 130279526 -18503946 - L2 LINE L2 -798 2516 1846 426 218 70 42 chr11 130279549 130279691 -18503781 - MIR SINE MIR 0 262 117 291 103 0 0 chr11 130279746 130279785 -18503687 - U2 snRNA snRNA -149 39 1 981 122 0 0 chr11 130279886 130280017 -18503455 + AluSq/x SINE Alu 5 135 -177 2195 130 0 0 chr11 130280018 130280318 -18503154 + AluSg SINE Alu 1 300 -10 2440 83 7 0 chr11 130280418 130280719 -18502753 - AluSx SINE Alu -9 303 1 261 119 0 0 chr11 130281590 130281632 -18501840 + (T)n Simple_repeat Simple_repeat 1 42 0 189 0 0 0 chr11 130281751 130281772 -18501700 + (A)n Simple_repeat Simple_repeat 1 21 0 1791 129 50 18 chr11 130281864 130282142 -18501330 + AluSx SINE Alu 1 287 -25 2302 105 0 0 chr11 130282147 130282452 -18501020 + AluSx SINE Alu 1 305 -7 1936 114 33 0 chr11 130282511 130282811 -18500661 - AluSq SINE Alu 0 313 5 1444 111 101 94 chr11 130283178 130283348 -18500124 - AluSx SINE Alu -3 309 135 2318 108 0 0 chr11 130283348 130283655 -18499817 - AluSg1 SINE Alu -2 307 1 1444 111 101 94 chr11 130283655 130283791 -18499681 - AluSx SINE Alu -177 135 1 802 144 0 38 chr11 130285339 130285471 -18498001 + FLAM_C SINE Alu 1 127 -6 2059 87 16 68 chr11 130285777 130286087 -18497385 + AluSp SINE Alu 1 294 -19 457 141 0 14 chr11 130286089 130286160 -18497312 + AluS SINE Alu 2 71 -240 347 327 82 9 chr11 130286276 130286542 -18496930 - L2 LINE L2 -335 2978 2694 1815 157 4 0 chr11 130286552 130286833 -18496639 + AluSx SINE Alu 9 290 -22 255 292 28 0 chr11 130286921 130286993 -18496479 + MER99 DNA DNA 29 102 -726 895 158 6 57 chr11 130287059 130287236 -18496236 - AluSg/x SINE Alu -11 299 132 2472 48 3 0 chr11 130287275 130287607 -18495865 + AluY SINE Alu 1 311 0 1188 184 90 4 chr11 130287608 130287853 -18495619 + MER99 DNA DNA 242 507 -321 26 50 0 0 chr11 130287926 130287966 -18495506 + AT_rich Low_complexity Low_complexity 1 40 0 607 26 0 0 chr11 130287966 130288042 -18495430 - L1MA1 LINE L1 0 6302 6227 2427 65 10 3 chr11 130288144 130288450 -18495022 + AluSp SINE Alu 3 310 -3 1810 163 14 0 chr11 130288465 130288766 -18494706 + AluSx SINE Alu 1 305 0 251 225 78 62 chr11 130289427 130289556 -18493916 + L1MC/D LINE L1 5779 5909 -1899 1019 129 12 31 chr11 130290267 130290430 -18493042 + AluSg/x SINE Alu 132 291 -21 2149 131 3 7 chr11 130290570 130290876 -18492596 - AluSq SINE Alu -8 305 1 218 296 56 0 chr11 130292315 130292386 -18491086 + L2 LINE L2 3187 3261 -52 1039 164 30 10 chr11 130292566 130292767 -18490705 - L1M4 LINE L1 -2210 3936 3732 642 280 19 9 chr11 130292782 130292993 -18490479 - L1M4 LINE L1 -2642 3504 3292 1811 176 3 0 chr11 130293038 130293328 -18490144 + AluJo SINE Alu 2 292 -20 1997 89 4 0 chr11 130293349 130293606 -18489866 + AluY SINE Alu 1 258 -53 706 53 11 11 chr11 130293609 130293704 -18489768 + HY3 scRNA scRNA 4 98 -3 180 0 0 0 chr11 130293705 130293725 -18489747 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2265 99 0 10 chr11 130293869 130294183 -18489289 + AluY SINE Alu 1 311 0 1457 127 4 22 chr11 130294195 130294423 -18489049 + AluSx SINE Alu 1 224 -88 1280 148 140 9 chr11 130294603 130294832 -18488640 - AluSx SINE Alu -53 259 1 1990 156 0 58 chr11 130294877 130294965 -18488507 + MER2 DNA MER2_type 1 93 -251 2306 107 3 0 chr11 130294965 130295275 -18488197 - AluSq SINE Alu -2 311 1 1990 156 0 58 chr11 130295275 130295551 -18487921 + MER2 DNA MER2_type 93 344 0 849 175 0 0 chr11 130295727 130295853 -18487619 + FLAM_C SINE Alu 1 126 -17 2071 142 0 3 chr11 130295861 130296156 -18487316 - AluSx SINE Alu -17 295 2 23 33 0 0 chr11 130296156 130296186 -18487286 + AT_rich Low_complexity Low_complexity 1 30 0 2690 169 58 50 chr11 130296200 130296750 -18486722 + L1M4 LINE L1 4749 5306 -840 2165 120 10 0 chr11 130296750 130297058 -18486414 + AluSp SINE Alu 3 313 0 2690 169 58 50 chr11 130297058 130297122 -18486350 + L1M4 LINE L1 5306 5368 -778 469 160 106 8 chr11 130297122 130297221 -18486251 - MLT1D LTR MaLR -13 511 398 335 173 0 0 chr11 130297221 130297273 -18486199 + L1MB7 LINE L1 6012 6063 -121 531 132 0 33 chr11 130297273 130297364 -18486108 - AluJb SINE Alu -176 136 49 233 95 71 24 chr11 130297366 130297408 -18486064 + L1MB8 LINE L1 6075 6118 -60 1502 179 34 34 chr11 130297434 130297770 -18485702 - AluJo SINE Alu 0 312 1 406 156 0 0 chr11 130297774 130297838 -18485634 + L1MB8 LINE L1 6115 6178 0 2218 116 0 6 chr11 130297848 130298159 -18485313 + AluSc SINE Alu 1 309 0 274 292 0 21 chr11 130298201 130298297 -18485175 - MLT1K LTR MaLR -30 558 465 1071 151 36 12 chr11 130298447 130298613 -18484859 + AluJb SINE Alu 1 170 -142 31 44 0 0 chr11 130298643 130298688 -18484784 + AT_rich Low_complexity Low_complexity 1 45 0 655 186 51 0 chr11 130298707 130298825 -18484647 + FLAM_C SINE Alu 2 125 -18 663 96 21 0 chr11 130298837 130298931 -18484541 + AluJb SINE Alu 36 131 -181 2178 142 0 0 chr11 130298967 130299278 -18484194 + AluSx SINE Alu 1 311 -1 2415 87 0 0 chr11 130299437 130299737 -18483735 + AluY SINE Alu 1 300 -11 393 173 13 0 chr11 130299784 130299859 -18483613 + L1MB7 LINE L1 6039 6114 -70 1882 141 21 10 chr11 130299859 130300150 -18483322 + AluSx SINE Alu 1 294 -18 2162 127 0 7 chr11 130300278 130300585 -18482887 - AluSx SINE Alu -7 305 1 743 195 0 0 chr11 130301723 130301846 -18481626 + AluJb SINE Alu 2 124 -188 301 136 45 45 chr11 130302272 130302338 -18481134 + FLAM SINE Alu 67 132 -1 2440 54 0 17 chr11 130302426 130302723 -18480749 - AluY SINE Alu -19 292 1 2176 122 3 7 chr11 130302740 130303043 -18480429 - AluSq SINE Alu -11 302 1 2123 129 26 0 chr11 130303323 130303625 -18479847 + AluSx SINE Alu 1 310 -2 234 305 136 0 chr11 130304380 130304498 -18478974 - MIR SINE MIR -81 181 48 1111 157 92 0 chr11 130304506 130304723 -18478749 + L1MB8 LINE L1 5489 5725 -453 2039 153 67 12 chr11 130304952 130305371 -18478101 + L1MB8 LINE L1 5732 6173 -5 346 266 46 9 chr11 130305730 130305839 -18477633 + LTR67 LTR ERVL 428 540 -17 2293 67 0 11 chr11 130306000 130306308 -18477164 + AluY SINE Alu 1 305 0 1874 129 11 25 chr11 130306561 130306847 -18476625 - AluSq SINE Alu -31 282 1 230 157 0 0 chr11 130306850 130306900 -18476572 + L1P LINE L1 4964 5013 -1133 230 167 0 0 chr11 130306911 130306953 -18476519 + L1MD1 LINE L1 5894 5935 -307 1788 142 32 0 chr11 130306986 130307267 -18476205 + AluJb SINE Alu 1 290 -22 2150 134 0 3 chr11 130307273 130307580 -18475892 - AluSx SINE Alu -6 306 1 322 127 55 0 chr11 130307596 130307651 -18475821 - AluJo SINE Alu -166 136 79 271 189 0 0 chr11 130307713 130307766 -18475706 + L2 LINE L2 3261 3313 0 1930 174 0 0 chr11 130307806 130308116 -18475356 - AluJb SINE Alu 0 312 3 1921 152 10 3 chr11 130308242 130308539 -18474933 + AluJb SINE Alu 1 299 -13 206 119 48 24 chr11 130308633 130308675 -18474797 + CT-rich Low_complexity Low_complexity 5 47 0 1703 183 0 10 chr11 130309416 130309716 -18473756 + AluJb SINE Alu 16 312 0 864 226 116 61 chr11 130310057 130310229 -18473243 + MLT1K LTR MaLR 135 296 -292 1929 140 0 44 chr11 130310229 130310550 -18472922 - AluJb SINE Alu -5 307 1 864 226 116 61 chr11 130310550 130310687 -18472785 + MLT1K LTR MaLR 296 461 -127 236 53 26 0 chr11 130310747 130310785 -18472687 + (TA)n Simple_repeat Simple_repeat 2 40 0 1880 137 3 24 chr11 130310785 130310974 -18472498 - AluSx SINE Alu -25 287 105 1919 118 78 28 chr11 130310974 130311331 -18472141 - THE1C LTR MaLR 0 375 1 1880 137 3 24 chr11 130311331 130311434 -18472038 - AluSx SINE Alu -207 105 1 244 178 0 0 chr11 130311444 130311489 -18471983 + MLT1K LTR MaLR 524 568 -20 2015 257 40 25 chr11 130311491 130312167 -18471305 - HAL1 LINE L1 -659 1848 1163 1434 164 4 36 chr11 130312169 130312450 -18471022 - AluJo SINE Alu -6 306 35 2258 99 3 3 chr11 130312816 130313108 -18470364 - AluSq SINE Alu -15 298 7 1053 79 7 7 chr11 130313109 130313248 -18470224 - AluSq/x SINE Alu -174 139 1 345 247 31 21 chr11 130313250 130313347 -18470125 - MIR SINE MIR -71 191 94 227 62 0 0 chr11 130313815 130313847 -18469625 - AluSq SINE Alu -6 296 265 1355 101 5 5 chr11 130313851 130314039 -18469433 - AluSq SINE Alu -124 189 2 1002 251 28 39 chr11 130314047 130314330 -18469142 + MER69 DNA AcHobo 295 574 -1952 800 103 8 34 chr11 130314333 130314450 -18469022 + FLAM_C SINE Alu 14 127 -16 2252 106 3 7 chr11 130314455 130314757 -18468715 + AluSp SINE Alu 1 301 -12 2306 111 7 0 chr11 130314959 130315265 -18468207 - AluSx SINE Alu -4 308 1 1340 256 71 4 chr11 130315298 130315861 -18467611 - ERVL LTR ERVL -280 5484 4829 675 268 0 0 chr11 130315865 130316003 -18467469 - ERVL LTR ERVL -2305 3459 3322 2111 110 17 7 chr11 130316005 130316305 -18467167 + AluSx SINE Alu 1 303 -9 2335 103 0 10 chr11 130316315 130316625 -18466847 + AluSx SINE Alu 2 308 -4 1885 140 3 32 chr11 130316756 130317070 -18466402 - AluJo SINE Alu -7 305 1 484 230 74 32 chr11 130317071 130317288 -18466184 - HAL1 LINE L1 -1324 1183 958 281 217 96 78 chr11 130317301 130317497 -18465975 - L1MC4a LINE L1 -1 7807 7616 1598 175 31 14 chr11 130317497 130317783 -18465689 - AluJo SINE Alu -21 291 1 281 217 96 78 chr11 130317783 130317854 -18465618 - L1MC4a LINE L1 -192 7616 7548 2095 140 0 7 chr11 130317854 130318162 -18465310 - AluSx SINE Alu 0 312 7 281 217 96 78 chr11 130318162 130319061 -18464411 - L1MC4a LINE L1 -260 7548 6686 3601 94 6 10 chr11 130319061 130319563 -18463909 - L1PA14 LINE L1 0 6161 5662 2410 96 0 0 chr11 130319617 130319920 -18463552 - AluSq SINE Alu -10 303 1 2360 91 0 3 chr11 130319920 130320216 -18463256 - AluSq SINE Alu -13 300 5 2261 87 20 3 chr11 130320516 130320815 -18462657 + AluSq SINE Alu 1 304 -9 700 250 0 6 chr11 130320878 130321058 -18462414 - AluSg/x SINE Alu -13 299 121 2140 100 37 7 chr11 130321169 130321469 -18462003 - AluSx SINE Alu -3 309 1 2450 77 0 0 chr11 130321499 130321796 -18461676 - AluY SINE Alu -14 297 1 1851 154 13 7 chr11 130321828 130322126 -18461346 + AluJo SINE Alu 1 300 -12 201 326 90 34 chr11 130322313 130322402 -18461070 + L3 LINE CR1 48 141 -1436 2292 95 0 7 chr11 130322441 130322737 -18460735 - AluSc SINE Alu -15 294 1 1956 120 6 78 chr11 130322814 130323147 -18460325 - AluSx SINE Alu -3 309 1 1783 178 0 0 chr11 130323191 130323483 -18459989 + AluJb SINE Alu 1 292 -20 547 101 0 13 chr11 130323491 130323570 -18459902 + AluJ/FLAM SINE Alu 2 79 -233 231 222 0 100 chr11 130323578 130323668 -18459804 - Charlie8 DNA MER1_type -2300 117 37 258 175 0 0 chr11 130324048 130324088 -18459384 + MER2 DNA MER2_type 2 41 -304 203 239 56 56 chr11 130324109 130324180 -18459292 - MIR SINE MIR -79 183 113 421 209 7 4 chr11 130324202 130324354 -18459118 + MER20 DNA MER1_type 6 214 -5 2314 88 3 10 chr11 130324496 130324793 -18458679 + AluSx SINE Alu 1 295 -17 1052 8 0 16 chr11 130325077 130325199 -18458273 - AluYa5/8 SINE Alu -191 120 1 228 301 55 55 chr11 130325360 130325559 -18457913 - L2 LINE L2 -13 3300 3102 2044 128 0 3 chr11 130325654 130325944 -18457528 + AluSg SINE Alu 1 289 -21 1550 106 0 0 chr11 130325951 130326150 -18457322 + AluSx SINE Alu 14 212 -100 2130 92 46 3 chr11 130326653 130326936 -18456536 - AluSg SINE Alu -15 295 1 583 119 0 0 chr11 130327279 130327363 -18456109 - AluJ/FRAM SINE Alu -12 300 217 829 173 0 0 chr11 130327364 130327491 -18455981 - AluJo/FLAM SINE Alu -185 127 1 2262 112 0 25 chr11 130327523 130327844 -18455628 + AluSq SINE Alu 1 313 0 877 94 24 8 chr11 130328013 130328140 -18455332 - AluSq/x SINE Alu -183 130 2 2405 96 0 0 chr11 130328162 130328475 -18454997 + AluSq SINE Alu 1 313 0 758 46 85 144 chr11 130328493 130328646 -18454826 - MER30 DNA MER1_type -86 144 1 369 215 21 0 chr11 130328927 130329020 -18454452 - L1MC4 LINE L1 0 8042 7948 2285 97 7 0 chr11 130329126 130329424 -18454048 - AluSq SINE Alu -13 300 1 874 143 0 0 chr11 130329470 130329589 -18453883 + FLAM_C SINE Alu 1 119 -24 186 43 0 0 chr11 130329592 130329615 -18453857 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 416 152 0 0 chr11 130329615 130329681 -18453791 + MER74B LTR ERVL 110 175 -447 2161 102 38 0 chr11 130379690 130379983 -18403489 - AluSx SINE Alu -8 304 1 2342 108 0 0 chr11 130380013 130380309 -18403163 - AluSg SINE Alu -14 296 1 1839 175 0 0 chr11 130380316 130380608 -18402864 - AluJb SINE Alu -20 292 1 1898 120 9 94 chr11 130380652 130380994 -18402478 + AluSq SINE Alu 1 313 0 2265 95 0 10 chr11 130381068 130381364 -18402108 + AluSc SINE Alu 1 293 -16 277 311 78 39 chr11 130381403 130381506 -18401966 - L3 LINE CR1 -1436 141 35 1884 154 13 7 chr11 130381679 130381977 -18401495 - AluJo SINE Alu -12 300 1 959 188 21 73 chr11 130381986 130382009 -18401463 - Charlie1b DNA MER1_type -2389 372 349 2531 72 0 0 chr11 130382009 130382316 -18401156 + AluY SINE Alu 1 307 -4 959 188 21 73 chr11 130382316 130382357 -18401115 - Charlie1b DNA MER1_type -2412 349 307 2016 187 22 3 chr11 130382357 130382715 -18400757 + MLT1A1 LTR MaLR 1 365 0 959 188 21 73 chr11 130382715 130382936 -18400536 - Charlie1b DNA MER1_type -2454 307 101 2045 151 3 3 chr11 130382959 130383264 -18400208 - AluSx SINE Alu -7 305 1 2194 120 0 0 chr11 130383268 130383575 -18399897 - AluSq SINE Alu 0 307 1 2550 58 0 0 chr11 130383603 130383896 -18399576 + AluY SINE Alu 1 293 -18 2077 111 7 0 chr11 130383902 130384181 -18399291 + AluSp SINE Alu 1 281 -32 225 0 0 0 chr11 130384181 130384206 -18399266 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 413 219 12 0 chr11 130384206 130384288 -18399184 - Charlie1b DNA MER1_type -440 83 1 781 268 107 58 chr11 130384299 130384646 -18398826 + L3 LINE CR1 607 970 -607 4002 111 21 53 chr11 130385145 130385419 -18398053 - MER41B LTR ERV1 0 635 354 438 14 28 42 chr11 130385419 130385491 -18397981 + (TTTA)n Simple_repeat Simple_repeat 2 72 0 2356 44 15 0 chr11 130385495 130385769 -18397703 - AluY SINE Alu -33 278 1 4002 111 21 53 chr11 130385769 130385968 -18397504 - MER41B LTR ERV1 -284 351 180 1603 56 127 75 chr11 130385968 130386268 -18397204 - AluSg SINE Alu 0 314 1 4002 111 21 53 chr11 130386268 130386443 -18397029 - MER41B LTR ERV1 -455 180 1 710 286 45 35 chr11 130386486 130386728 -18396744 + MIR SINE MIR 5 258 -4 2202 108 0 7 chr11 130386749 130387046 -18396426 - AluSc SINE Alu -14 295 1 2323 99 0 20 chr11 130387048 130387352 -18396120 - AluSx SINE Alu -14 298 1 376 209 110 0 chr11 130387750 130387840 -18395632 - MER115 DNA AcHobo -30 663 564 467 195 0 0 chr11 130387840 130387922 -18395550 + MER21B LTR ERV1 1 82 -781 940 136 39 13 chr11 130387933 130388087 -18395385 - AluSg/x SINE Alu 0 310 153 1618 112 9 9 chr11 130388087 130388310 -18395162 + AluSq SINE Alu 85 307 -6 248 220 51 0 chr11 130388310 130388369 -18395103 - MER115 DNA AcHobo -159 534 473 275 104 0 62 chr11 130388418 130388466 -18395006 - LTR8 LTR ERV1 0 691 647 710 18 0 100 chr11 130388466 130388576 -18394896 - HUERS-P1 LTR ERV1 -3286 2977 2879 913 135 0 0 chr11 130388613 130388746 -18394726 + FLAM_C SINE Alu 1 133 0 461 274 27 81 chr11 130388746 130389005 -18394467 - L2 LINE L2 -614 2700 2456 2047 103 23 13 chr11 130389184 130389484 -18393988 + AluSx SINE Alu 1 303 -9 30 27 0 0 chr11 130389501 130389538 -18393934 + AT_rich Low_complexity Low_complexity 1 37 0 512 257 128 4 chr11 130389547 130389638 -18393834 - MER112 DNA MER1_type -1 255 177 243 0 0 0 chr11 130389638 130389665 -18393807 + (AATAG)n Simple_repeat Simple_repeat 5 31 0 512 257 128 4 chr11 130389665 130389799 -18393673 - MER112 DNA MER1_type -79 177 2 1658 146 112 0 chr11 130389934 130390194 -18393278 - AluJb SINE Alu -23 289 1 310 298 8 66 chr11 130390205 130390326 -18393146 - L2 LINE L2 -4 3268 3155 565 277 36 12 chr11 130390413 130390579 -18392893 - MIR SINE MIR -5 257 88 812 172 68 52 chr11 130390586 130390778 -18392694 - MLT1B LTR MaLR -4 386 192 206 205 0 0 chr11 130390780 130390819 -18392653 + G-rich Low_complexity Low_complexity 3 41 0 276 85 85 0 chr11 130390819 130390866 -18392606 - MLT1B LTR MaLR -323 51 1 2334 78 0 26 chr11 130390907 130391216 -18392256 - AluY SINE Alu -10 301 1 180 0 0 0 chr11 130391296 130391316 -18392156 + (T)n Simple_repeat Simple_repeat 1 20 0 2493 58 3 3 chr11 130391488 130391781 -18391691 - AluY SINE Alu -18 293 1 1206 45 0 0 chr11 130391781 130391915 -18391557 - AluSc SINE Alu -175 134 1 1939 139 65 34 chr11 130391960 130392313 -18391159 + THE1B LTR MaLR 1 364 0 2086 110 7 0 chr11 130392426 130392718 -18390754 - AluSg SINE Alu -6 304 11 1586 200 11 0 chr11 130392730 130393033 -18390439 - AluJb SINE Alu 0 306 1 1317 198 49 19 chr11 130393060 130393323 -18390149 - REP3 LTR ERV 0 562 292 2870 214 26 85 chr11 130393348 130394378 -18389094 - LTR5 LTR ERVK 0 969 1 1877 102 14 11 chr11 130394389 130394673 -18388799 - AluSg SINE Alu -25 285 1 1328 219 45 7 chr11 130394688 130394957 -18388515 - REP3 LTR ERV -257 305 27 265 241 0 0 chr11 130395016 130395070 -18388402 + L1MC4a LINE L1 6476 6529 -1279 1698 163 7 26 chr11 130395110 130395416 -18388056 + AluJb SINE Alu 1 300 -12 245 259 137 15 chr11 130395420 130395551 -18387921 + L1MC4 LINE L1 7526 7672 -370 314 268 143 12 chr11 130395766 130395934 -18387538 + L1MC4 LINE L1 7853 8042 0 1706 148 115 13 chr11 130396089 130396393 -18387079 - MER1B DNA MER1_type -1 338 4 2042 96 30 20 chr11 130396615 130396917 -18386555 - AluSx SINE Alu -7 305 1 278 250 186 40 chr11 130397992 130398116 -18385356 + L2 LINE L2 2924 3065 -248 182 263 92 92 chr11 130398260 130398336 -18385136 + L2 LINE L2 3145 3220 -52 1201 117 0 0 chr11 130398546 130398709 -18384763 - AluSc SINE Alu -15 294 132 2465 34 0 7 chr11 130398709 130399005 -18384467 - AluYa5 SINE Alu -11 300 7 2268 77 0 31 chr11 130399894 130400217 -18383255 - AluSq SINE Alu 0 313 1 23 0 0 0 chr11 130401114 130401137 -18382335 + AT_rich Low_complexity Low_complexity 1 23 0 1684 163 66 26 chr11 130401205 130401554 -18381918 - MER89 LTR ERV1 0 559 197 295 176 135 0 chr11 130401532 130401606 -18381866 - MER89 LTR ERV1 -475 84 1 * 948 112 0 8 chr11 130402492 130402626 -18380846 - AluSq/x SINE Alu -179 133 1 1882 138 0 10 chr11 130402716 130403013 -18380459 - AluJo SINE Alu -18 294 1 432 237 205 13 chr11 130403318 130403474 -18379998 - MER5A DNA MER1_type -1 188 3 2258 79 0 10 chr11 130403709 130404012 -18379460 + AluSg SINE Alu 1 300 -10 202 61 61 0 chr11 130404032 130404065 -18379407 + (TTTAA)n Simple_repeat Simple_repeat 1 35 0 271 160 40 0 chr11 130404148 130404198 -18379274 + L2 LINE L2 3262 3313 0 * 370 290 97 32 chr11 130404183 130404338 -18379134 - MIR3 SINE MIR -26 182 18 249 273 30 15 chr11 130404357 130404423 -18379049 - MIR3 SINE MIR -2 206 140 * 406 242 75 39 chr11 130404422 130404566 -18378906 - MER5B DNA MER1_type -37 152 1 2492 47 0 3 chr11 130404892 130405190 -18378282 - AluY SINE Alu -14 297 1 578 196 9 9 chr11 130405204 130405316 -18378156 - FLAM_A SINE Alu -21 121 10 2122 114 0 16 chr11 130405334 130405642 -18377830 + AluSx SINE Alu 1 303 -9 1217 118 0 0 chr11 130405642 130405812 -18377660 + AluSq SINE Alu 134 303 -10 520 140 175 9 chr11 130405863 130405977 -18377495 + AluJb SINE Alu 2 134 -178 183 341 122 0 chr11 130406010 130406092 -18377380 + MIR SINE MIR 50 141 -121 837 222 5 58 chr11 130406117 130406244 -18377228 + MIR SINE MIR 5 118 -144 2120 107 3 0 chr11 130406244 130406543 -18376929 - AluSx SINE Alu -12 300 1 837 222 5 58 chr11 130406543 130406622 -18376850 + MIR SINE MIR 118 200 -62 1922 234 99 115 chr11 130406624 130406716 -18376756 + L2 LINE L2 2102 2194 -1119 2054 108 4 0 chr11 130406716 130407029 -18376443 + AluSg1 SINE Alu 1 314 0 1922 234 99 115 chr11 130407029 130407193 -18376279 + L2 LINE L2 2194 2359 -954 1724 146 20 3 chr11 130407193 130407488 -18375984 - AluJo SINE Alu -12 300 1 1922 234 99 115 chr11 130407488 130408169 -18375303 + L2 LINE L2 2359 3050 -263 1820 159 3 0 chr11 130408169 130408458 -18375014 + AluJb SINE Alu 1 290 -22 1922 234 99 115 chr11 130408458 130408583 -18374889 + L2 LINE L2 3050 3176 -137 1734 171 3 3 chr11 130408583 130408888 -18374584 - AluJb SINE Alu -7 305 1 1922 234 99 115 chr11 130408888 130409084 -18374388 + L2 LINE L2 3176 3313 0 1011 113 38 0 chr11 130409206 130409242 -18374230 + MER41B LTR ERV1 470 503 -132 2128 132 0 0 chr11 130409242 130409553 -18373919 - AluSx SINE Alu -1 311 1 1011 113 38 0 chr11 130409553 130409675 -18373797 + MER41B LTR ERV1 503 634 -1 559 141 35 0 chr11 130409676 130409761 -18373711 + MER41B-int LTR ERV1 1 88 -5858 * 6648 94 30 11 chr11 130409756 130410680 -18372792 + MER41-int LTR ERV1 4639 5583 -363 1939 88 4 0 chr11 130410680 130410940 -18372532 - AluSp SINE Alu -52 261 1 6648 94 30 11 chr11 130410940 130410977 -18372495 + MER41-int LTR ERV1 5583 5618 -328 837 91 0 0 chr11 130410977 130411087 -18372385 + FRAM SINE Alu 51 160 -16 2246 107 0 3 chr11 130411276 130411586 -18371886 + AluSx SINE Alu 1 309 -3 947 114 0 0 chr11 130411588 130411719 -18371753 + AluSc SINE Alu 1 131 -178 2687 7 0 0 chr11 130411846 130412146 -18371326 - AluYa5 SINE Alu -11 300 1 517 309 57 84 chr11 130412307 130412601 -18370871 - L2 LINE L2 -13 3300 3000 1990 100 3 34 chr11 130412601 130412923 -18370549 + AluSg SINE Alu 1 313 0 517 309 57 84 chr11 130412923 130412970 -18370502 - L2 LINE L2 -313 3000 2953 2279 93 0 0 chr11 130412970 130413261 -18370211 - AluSg SINE Alu -19 291 1 1945 115 0 0 chr11 130413266 130413536 -18369936 - AluSx SINE Alu -13 299 30 517 309 57 84 chr11 130413536 130413800 -18369672 - L2 LINE L2 -364 2949 2694 1703 157 4 0 chr11 130413810 130414091 -18369381 + AluSx SINE Alu 9 290 -22 246 292 28 0 chr11 130414179 130414251 -18369221 + MER99 DNA DNA 29 102 -726 836 169 6 45 chr11 130414317 130414494 -18368978 - AluSg/x SINE Alu -9 303 134 2342 48 3 0 chr11 130414533 130414869 -18368603 + AluY SINE Alu 1 311 0 1180 184 90 4 chr11 130414870 130415115 -18368357 + MER99 DNA DNA 242 507 -321 26 50 0 0 chr11 130415188 130415228 -18368244 + AT_rich Low_complexity Low_complexity 1 40 0 600 26 0 0 chr11 130415228 130415304 -18368168 - L1MA2 LINE L1 0 6304 6229 2368 62 10 0 chr11 130415406 130415712 -18367760 + AluSp SINE Alu 3 311 -2 1694 163 14 0 chr11 130415727 130416028 -18367444 + AluSx SINE Alu 1 305 0 242 225 78 62 chr11 130416689 130416818 -18366654 + L1MC/D LINE L1 5779 5909 -1899 350 291 252 5 chr11 130417358 130417568 -18365904 - L1MC4 LINE L1 -2 8040 7779 265 102 61 61 chr11 130417570 130417619 -18365853 + AluSg/x SINE Alu 118 166 -134 1891 120 4 4 chr11 130417619 130417894 -18365578 + AluSg SINE Alu 7 281 -29 2369 74 3 0 chr11 130417895 130418194 -18365278 + AluSg SINE Alu 1 300 -10 251 214 18 0 chr11 130418307 130418363 -18365109 + LTR67 LTR ERVL 484 540 -17 2166 67 0 11 chr11 130418524 130418832 -18364640 + AluY SINE Alu 1 305 0 590 209 0 81 chr11 130418944 130419092 -18364380 + FLAM_C SINE Alu 2 137 -6 1322 179 175 0 chr11 130419704 130419961 -18363511 - AluJo SINE Alu 0 302 1 562 84 0 93 chr11 130420220 130420270 -18363202 + L1PB1 LINE L1 6053 6089 -62 1969 128 0 3 chr11 130420270 130420566 -18362906 + AluSx SINE Alu 1 295 -17 562 84 0 93 chr11 130420566 130420622 -18362850 + L1PB1 LINE L1 6089 6149 -2 252 272 88 44 chr11 130420852 130420966 -18362506 - MIR SINE MIR -46 216 98 1291 200 16 66 chr11 130421086 130421391 -18362081 + AluJo SINE Alu 1 290 -12 586 246 138 26 chr11 130421449 130421644 -18361828 - MIR SINE MIR -3 259 43 211 313 104 0 chr11 130421710 130421777 -18361695 - L2 LINE L2 -43 3229 3156 2062 124 3 3 chr11 130421790 130422097 -18361375 + AluSc SINE Alu 1 307 -2 192 182 73 36 chr11 130422503 130422558 -18360914 + L3 LINE CR1 600 656 -921 1506 237 127 26 chr11 130422625 130422845 -18360627 + L1MC4 LINE L1 6658 6854 -1188 1906 162 3 0 chr11 130422845 130423154 -18360318 + AluSx SINE Alu 1 310 -2 1506 237 127 26 chr11 130423154 130423469 -18360003 + L1MC4 LINE L1 6854 7247 -795 194 380 0 25 chr11 130423494 130423573 -18359899 + MIR SINE MIR 27 103 -105 634 162 370 7 chr11 130423574 130423728 -18359744 - MER20 DNA MER1_type -4 215 6 248 235 49 86 chr11 130423741 130423822 -18359650 + MIR SINE MIR 106 183 -79 1171 248 89 75 chr11 130423845 130424136 -18359336 + L1MC4 LINE L1 7261 7546 -496 1471 151 90 11 chr11 130424136 130424415 -18359057 + AluJb SINE Alu 1 301 -11 1171 248 89 75 chr11 130424415 130424777 -18358695 + L1MC4 LINE L1 7546 7923 -119 2072 94 13 10 chr11 130425074 130425382 -18358090 + AluSx SINE Alu 1 309 -3 1480 154 70 44 chr11 130425618 130425791 -18357681 - AluJo SINE Alu -6 306 120 2181 90 10 0 chr11 130425791 130426081 -18357391 + AluSq SINE Alu 1 293 -20 1480 154 70 44 chr11 130426081 130426205 -18357267 - AluJo SINE Alu -192 120 1 653 221 37 6 chr11 130426207 130426370 -18357102 + ERVL LTR ERVL 2543 2710 -3054 318 180 0 0 chr11 130426370 130426431 -18357041 + MLT1F LTR MaLR 243 303 -239 691 243 20 0 chr11 130426435 130426587 -18356885 + FRAM SINE Alu 16 170 -6 3093 229 31 65 chr11 130426590 130426947 -18356525 - ERVL-E LTR ERVL -3208 2556 2188 2413 67 0 0 chr11 130426947 130427246 -18356226 + AluY SINE Alu 2 300 -11 3093 229 31 65 chr11 130427246 130427715 -18355757 - ERVL-E LTR ERVL -3576 2188 1758 2217 88 0 0 chr11 130427725 130428020 -18355452 + AluSg SINE Alu 1 295 -15 1299 148 76 48 chr11 130428107 130428398 -18355074 - AluJo SINE Alu 0 312 14 1111 240 108 37 chr11 130428451 130428885 -18354587 - MER74B LTR ERVL -48 574 110 186 43 0 0 chr11 130428885 130428908 -18354564 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 822 143 0 0 chr11 130428911 130429030 -18354442 - FLAM_C SINE Alu -24 119 1 2155 97 7 0 chr11 130429076 130429374 -18354098 + AluSq SINE Alu 1 300 -13 363 207 23 0 chr11 130429480 130429567 -18353905 + L1MC4 LINE L1 7948 8036 -6 777 324 29 40 chr11 130429797 130429849 -18353623 - ERVL-E LTR ERVL -5068 696 645 1116 58 51 212 chr11 130429849 130430019 -18353453 + MER30 DNA MER1_type 1 197 -33 2214 102 0 0 chr11 130430019 130430332 -18353140 - AluSq SINE Alu 0 313 1 1116 58 51 212 chr11 130430332 130430354 -18353118 + MER30 DNA MER1_type 197 140 -90 2139 101 7 7 chr11 130430354 130430660 -18352812 + AluSx SINE Alu 1 306 -6 1116 58 51 212 chr11 130430660 130430740 -18352732 + MER30 DNA MER1_type 139 230 0 777 324 29 40 chr11 130430740 130431107 -18352365 - ERVL-E LTR ERVL -5119 645 282 717 264 108 14 chr11 130431297 130431692 -18351780 - MLT2E LTR ERVL -1 627 141 1410 94 0 0 chr11 130431698 130431879 -18351593 + AluSg SINE Alu 1 181 -129 203 171 0 0 chr11 130432918 130432959 -18350513 + T-rich Low_complexity Low_complexity 1 41 0 2220 86 0 7 chr11 130433501 130433803 -18349669 + AluSx SINE Alu 2 301 -11 1678 129 50 18 chr11 130433895 130434173 -18349299 + AluSx SINE Alu 1 287 -25 2176 105 0 0 chr11 130434178 130434483 -18348989 + AluSx SINE Alu 1 305 -7 1823 114 33 0 chr11 130434542 130434842 -18348630 - AluSq SINE Alu 0 313 5 1351 115 102 88 chr11 130435209 130435377 -18348095 - AluSx SINE Alu -3 309 134 2285 97 0 0 chr11 130435377 130435686 -18347786 - AluSg1 SINE Alu 0 309 1 1351 115 102 88 chr11 130435686 130435822 -18347650 - AluSx SINE Alu -178 134 1 819 144 0 30 chr11 130437370 130437502 -18345970 + FLAM_C SINE Alu 1 128 -5 1941 87 16 68 chr11 130437808 130438119 -18345353 + AluSp SINE Alu 1 295 -18 2103 123 0 0 chr11 130438119 130438412 -18345060 + AluSg SINE Alu 1 293 -17 1611 141 96 24 chr11 130438750 130439041 -18344431 - AluJb SINE Alu 0 312 1 25 0 0 0 chr11 130439041 130439066 -18344406 + AT_rich Low_complexity Low_complexity 1 25 0 360 59 0 0 chr11 130439181 130439232 -18344240 + (CA)n Simple_repeat Simple_repeat 1 51 0 1577 181 24 7 chr11 130439239 130439532 -18343940 - AluJo SINE Alu -14 298 1 571 79 26 35 chr11 130439817 130439931 -18343541 + (TTTC)n Simple_repeat Simple_repeat 4 116 0 1983 113 13 16 chr11 130439936 130440245 -18343227 - AluSx SINE Alu -4 308 1 309 262 18 118 chr11 130440391 130440612 -18342860 - L2 LINE L2 -16 3297 3099 2428 57 0 3 chr11 130441650 130441950 -18341522 + AluSg SINE Alu 1 299 -11 340 196 270 18 chr11 130442544 130442707 -18340765 + MIR SINE MIR 53 256 -6 181 51 231 0 chr11 130442675 130442714 -18340758 + L2 LINE L2 3262 3309 -4 * 1759 110 92 7 chr11 130444059 130444332 -18339140 - AluSx SINE Alu -16 296 1 51 44 0 11 chr11 130444361 130444429 -18339043 + AT_rich Low_complexity Low_complexity 1 69 -20 2249 85 3 0 chr11 130444429 130444724 -18338748 - AluSp SINE Alu -17 296 1 51 44 0 11 chr11 130444724 130444745 -18338727 + AT_rich Low_complexity Low_complexity 69 89 0 1227 163 4 58 chr11 130444824 130445081 -18338391 + AluJo SINE Alu 1 243 -69 933 146 13 0 chr11 130445131 130445289 -18338183 - AluSc SINE Alu -5 304 145 2097 114 0 25 chr11 130445422 130445738 -18337734 - AluSq SINE Alu -5 308 1 813 175 0 0 chr11 130445771 130445897 -18337575 + AluJo/FLAM SINE Alu 2 127 -185 584 119 0 0 chr11 130445898 130445982 -18337490 + AluJ/FRAM SINE Alu 217 300 -12 2023 91 46 3 chr11 130446325 130446610 -18336862 + AluSg SINE Alu 1 297 -13 1464 106 0 0 chr11 130447112 130447311 -18336161 - AluSx SINE Alu -100 212 14 2029 120 0 0 chr11 130447318 130447609 -18335863 - AluSx SINE Alu -21 291 1 509 145 0 0 chr11 130447638 130447714 -18335758 + AluJ/FLAM SINE Alu 4 79 -233 303 193 0 91 chr11 130447722 130447810 -18335662 - Charlie8 DNA MER1_type -2301 116 37 262 175 0 0 chr11 130448190 130448230 -18335242 + MER2 DNA MER2_type 2 41 -304 230 239 56 56 chr11 130448251 130448322 -18335150 - MIR SINE MIR -79 183 113 421 209 7 4 chr11 130448344 130448496 -18334976 + MER20 DNA MER1_type 6 214 -5 193 380 0 25 chr11 130448498 130448577 -18334895 - MIR SINE MIR -105 103 27 2186 88 3 10 chr11 130448638 130448935 -18334537 + AluSx SINE Alu 1 295 -17 261 83 0 0 chr11 130449103 130449139 -18334333 + (T)n Simple_repeat Simple_repeat 1 36 0 27 29 0 0 chr11 130449161 130449195 -18334277 + GC_rich Low_complexity Low_complexity 1 34 0 2100 131 0 0 chr11 130449296 130449601 -18333871 - AluSg SINE Alu -5 305 1 926 122 0 0 chr11 130449602 130449733 -18333739 - AluSq/x SINE Alu -177 135 5 291 103 0 0 chr11 130449834 130449873 -18333599 + U2 snRNA snRNA 1 39 -149 492 204 78 49 chr11 130449928 130450070 -18333402 + MIR SINE MIR 117 262 0 636 322 119 51 chr11 130450088 130451480 -18331992 + L2 LINE L2 1841 3313 0 2430 68 16 0 chr11 130451632 130451940 -18331532 + AluSq SINE Alu 1 313 0 1073 315 48 20 chr11 130451960 130452461 -18331011 - L2 LINE L2 -338 2976 2462 1751 162 7 3 chr11 130452537 130452839 -18330633 + AluSx SINE Alu 1 303 -9 426 297 0 0 chr11 130452851 130452952 -18330520 - L2 LINE L2 -9 3263 3163 2000 95 7 3 chr11 130453372 130453656 -18329816 + AluSg SINE Alu 1 285 -25 789 149 8 15 chr11 130453807 130453941 -18329531 - FLAM_C SINE Alu 0 133 1 2104 135 0 0 chr11 130453950 130454261 -18329211 - AluSx SINE Alu -1 311 1 2172 96 0 10 chr11 130454273 130454587 -18328885 - AluY SINE Alu 0 311 1 180 0 0 0 chr11 130454731 130454751 -18328721 + (TTG)n Simple_repeat Simple_repeat 2 21 0 705 53 11 11 chr11 130454752 130454847 -18328625 - HY3 scRNA scRNA -3 98 4 1883 89 4 0 chr11 130454850 130455107 -18328365 - AluY SINE Alu -53 258 1 1698 176 3 0 chr11 130455128 130455418 -18328054 - AluJo SINE Alu -20 292 2 624 280 19 9 chr11 130455463 130455674 -18327798 + L1M4 LINE L1 3292 3504 -2642 1041 179 20 0 chr11 130455689 130455890 -18327582 + L1M4 LINE L1 3732 3936 -2210 247 296 56 0 chr11 130456070 130456141 -18327331 - L2 LINE L2 -52 3261 3187 2034 137 3 0 chr11 130457580 130457886 -18325586 + AluSq SINE Alu 1 307 -6 1069 137 0 23 chr11 130458026 130458201 -18325271 - AluSg/x SINE Alu -21 291 121 260 225 88 25 chr11 130458331 130458411 -18325061 - MIR SINE MIR -73 189 105 1798 156 0 10 chr11 130458997 130459292 -18324180 + AluJo SINE Alu 1 292 -20 2256 72 0 16 chr11 130459292 130459596 -18323876 + AluY SINE Alu 1 299 -12 22 0 0 0 chr11 130459608 130459630 -18323842 + AT_rich Low_complexity Low_complexity 1 22 0 1639 148 32 14 chr11 130459817 130459934 -18323538 + AluJo SINE Alu 1 114 -198 2111 119 3 0 chr11 130459934 130460228 -18323244 + AluSq SINE Alu 1 295 -18 2110 94 0 41 chr11 130460229 130460549 -18322923 + AluSx SINE Alu 1 307 -5 1639 148 32 14 chr11 130460549 130460712 -18322760 + AluJo SINE Alu 113 288 -24 29 0 0 0 chr11 130460712 130460741 -18322731 + AT_rich Low_complexity Low_complexity 1 29 0 1202 157 0 0 chr11 130460741 130460932 -18322540 + AluJb SINE Alu 122 312 0 237 65 0 0 chr11 130461123 130461154 -18322318 + (A)n Simple_repeat Simple_repeat 1 31 0 322 260 0 13 chr11 130461240 130461317 -18322155 + MER94 DNA DNA 5 80 -54 259 250 67 29 chr11 130461505 130461609 -18321863 - L2 LINE L2 -215 3098 2991 213 380 179 11 chr11 130461759 130461938 -18321534 - L2 LINE L2 -556 2758 2550 24 0 0 0 chr11 130462163 130462187 -18321285 + AT_rich Low_complexity Low_complexity 1 24 0 327 286 51 73 chr11 130462370 130462446 -18321026 - L2 LINE L2 -1964 1350 1274 701 239 6 39 chr11 130462446 130462626 -18320846 - MER5B DNA MER1_type -1 177 4 327 286 51 73 chr11 130462626 130462727 -18320745 - L2 LINE L2 -2040 1274 1177 193 225 89 194 chr11 130462916 130463026 -18320446 - MIR SINE MIR 0 262 142 1561 163 32 11 chr11 130463026 130463309 -18320163 - AluJo SINE Alu -12 300 12 193 225 89 194 chr11 130463309 130463370 -18320102 - MIR SINE MIR -120 142 124 2207 111 0 0 chr11 130463370 130463676 -18319796 + AluSx SINE Alu 1 306 -6 193 225 89 194 chr11 130463676 130463761 -18319711 - MIR SINE MIR -138 124 32 2271 97 0 3 chr11 130464231 130464542 -18318930 + AluSg SINE Alu 1 310 0 322 232 0 32 chr11 130465444 130465520 -18317952 + MIR SINE MIR 13 85 -123 180 0 0 0 chr11 130465552 130465572 -18317900 + (T)n Simple_repeat Simple_repeat 1 20 0 2385 63 3 3 chr11 130465690 130465993 -18317479 - AluY SINE Alu -8 303 1 762 263 131 69 chr11 130465996 130466311 -18317161 - L1ME4a LINE L1 -293 5828 5463 2175 104 0 3 chr11 130466311 130466609 -18316863 - AluSg1 SINE Alu -12 297 1 762 263 131 69 chr11 130466609 130466795 -18316677 - L1ME4a LINE L1 -658 5463 5290 1679 167 11 0 chr11 130467094 130467370 -18316102 + AluJb SINE Alu 1 279 -33 273 29 0 0 chr11 130467370 130467404 -18316068 + (CA)n Simple_repeat Simple_repeat 1 34 0 2166 101 0 3 chr11 130468199 130468495 -18314977 - AluSx SINE Alu -17 295 1 2065 99 0 11 chr11 130469388 130469703 -18313769 + AluSg SINE Alu 1 312 0 25 0 0 0 chr11 130470085 130470110 -18313362 + AT_rich Low_complexity Low_complexity 1 25 0 540 282 88 0 chr11 130470115 130470296 -18313176 + MIR SINE MIR 10 206 -56 1738 143 52 3 chr11 130470379 130470665 -18312807 - AluJb SINE Alu -12 300 1 287 255 226 10 chr11 130470917 130471019 -18312453 - L2 LINE L2 0 3272 3149 229 176 78 0 chr11 130471382 130471433 -18312039 + L1ME3A LINE L1 5565 5619 -551 204 121 15 30 chr11 130471450 130471516 -18311956 + (TTATA)n Simple_repeat Simple_repeat 4 68 0 2201 102 0 0 chr11 130471562 130471865 -18311607 - AluSx SINE Alu -9 303 1 911 209 87 4 chr11 130471865 130472095 -18311377 + L1ME3A LINE L1 5729 5977 -193 1831 118 11 4 chr11 130472097 130472416 -18311056 - AluY SINE Alu 0 321 1 379 170 0 236 chr11 130472625 130472790 -18310682 + L2 LINE L2 3182 3307 -6 991 228 25 0 chr11 130472810 130473012 -18310460 + MIR SINE MIR 1 207 -55 1003 188 102 105 chr11 130473207 130473553 -18309919 + L1MC/D LINE L1 4615 4961 -1185 1941 124 10 17 chr11 130473553 130473851 -18309621 - AluSq SINE Alu -17 296 1 1003 188 102 105 chr11 130473851 130473904 -18309568 + L1MC/D LINE L1 4961 5013 -1133 226 167 0 0 chr11 130473915 130473957 -18309515 + L1MC/D LINE L1 5894 5935 -307 1674 142 32 0 chr11 130473990 130474271 -18309201 + AluJb SINE Alu 1 290 -22 2025 134 0 3 chr11 130474277 130474584 -18308888 - AluSx SINE Alu -6 306 1 322 127 55 0 chr11 130474600 130474655 -18308817 - AluJo SINE Alu -166 136 79 299 189 0 0 chr11 130474717 130474770 -18308702 + L2 LINE L2 3261 3313 0 1818 174 0 0 chr11 130474810 130475120 -18308352 - AluJb SINE Alu 0 312 3 1794 155 10 3 chr11 130475246 130475543 -18307929 + AluJb SINE Alu 1 299 -13 206 119 48 24 chr11 130475637 130475679 -18307793 + CT-rich Low_complexity Low_complexity 5 47 0 1598 183 0 10 chr11 130476420 130476720 -18306752 + AluJb SINE Alu 16 312 0 878 226 116 61 chr11 130477061 130477233 -18306239 + MLT1K LTR MaLR 135 296 -292 1814 140 0 44 chr11 130477233 130477554 -18305918 - AluJb SINE Alu -5 307 1 878 226 116 61 chr11 130477554 130477691 -18305781 + MLT1K LTR MaLR 296 461 -127 236 53 26 0 chr11 130477751 130477789 -18305683 + (TA)n Simple_repeat Simple_repeat 2 40 0 1825 134 3 20 chr11 130477789 130477977 -18305495 - AluSx SINE Alu -25 287 104 1941 121 79 25 chr11 130477977 130478333 -18305139 - THE1C LTR MaLR 0 375 1 1825 134 3 20 chr11 130478333 130478436 -18305036 - AluSx SINE Alu -208 104 1 242 178 0 0 chr11 130478446 130478491 -18304981 + MLT1K LTR MaLR 524 568 -20 2393 249 36 42 chr11 130478493 130479171 -18304301 - HAL1 LINE L1 -659 1848 1176 1757 143 3 32 chr11 130479171 130479486 -18303986 - AluJo SINE Alu -6 306 1 2393 249 36 42 chr11 130479486 130479704 -18303768 - HAL1 LINE L1 -1331 1176 958 3003 226 78 49 chr11 130479717 130479913 -18303559 - L1MC4 LINE L1 -1 7807 7618 1485 175 31 14 chr11 130479913 130480199 -18303273 - AluJo SINE Alu -21 291 1 3003 226 78 49 chr11 130480199 130480270 -18303202 - L1MC4 LINE L1 -190 7618 7551 1956 143 0 7 chr11 130480270 130480578 -18302894 - AluSx SINE Alu 0 312 7 3003 226 78 49 chr11 130480578 130481474 -18301998 - L1MC4 LINE L1 -257 7551 6599 3586 94 6 10 chr11 130481474 130481976 -18301496 - L1PA14 LINE L1 0 6161 5662 2290 95 0 0 chr11 130482030 130482334 -18301138 - AluSq SINE Alu -9 304 1 2263 92 0 0 chr11 130482334 130482628 -18300844 - AluSq SINE Alu -14 299 5 2266 80 17 0 chr11 130482928 130483228 -18300244 + AluSq SINE Alu 1 305 -8 1989 110 7 3 chr11 130483291 130483583 -18299889 - AluSp SINE Alu -14 299 7 866 155 27 0 chr11 130483909 130484057 -18299415 - AluJo SINE Alu -43 269 118 704 152 0 0 chr11 130484059 130484171 -18299301 - AluSq SINE Alu -10 303 192 306 87 43 0 chr11 130484171 130484217 -18299255 - AluSq SINE Alu -170 133 86 1028 189 0 35 chr11 130484217 130484303 -18299169 - AluJo SINE Alu -92 220 133 2095 105 3 3 chr11 130484303 130484597 -18298875 - AluSg SINE Alu -14 296 3 1028 189 0 35 chr11 130484597 130484738 -18298734 - AluJo SINE Alu -179 133 1 667 204 8 23 chr11 130484742 130484874 -18298598 - FLAM_C SINE Alu -1 132 3 2247 96 0 3 chr11 130484885 130485187 -18298285 - AluSx SINE Alu -11 301 1 382 333 49 14 chr11 130485189 130485384 -18298088 - MIR SINE MIR -38 224 16 228 135 0 0 chr11 130485610 130485647 -18297825 + (CA)n Simple_repeat Simple_repeat 1 37 0 2186 108 3 0 chr11 130485753 130486058 -18297414 - AluSp SINE Alu -7 306 1 530 174 20 10 chr11 130486058 130486156 -18297316 - AluJo SINE Alu -167 145 47 2120 92 0 0 chr11 130486161 130486445 -18297027 - AluSg SINE Alu -14 296 13 504 0 0 0 chr11 130486576 130486632 -18296840 + (TG)n Simple_repeat Simple_repeat 1 56 0 1686 194 0 0 chr11 130486870 130487174 -18296298 + AluJo SINE Alu 1 304 -8 191 163 0 23 chr11 130487182 130487225 -18296247 + GA-rich Low_complexity Low_complexity 2 43 0 271 252 65 72 chr11 130487228 130487367 -18296105 - MER112 DNA MER1_type -104 156 19 264 170 23 93 chr11 130487570 130487928 -18295544 + (TTGTG)n Simple_repeat Simple_repeat 1 332 0 874 192 33 0 chr11 130488226 130488408 -18295064 + MER5A DNA MER1_type 1 188 -1 258 294 54 83 chr11 130489063 130489177 -18294295 + MIR SINE MIR 50 157 -105 2227 82 3 3 chr11 130489177 130489480 -18293992 + AluSx SINE Alu 2 304 -8 258 294 54 83 chr11 130489480 130489569 -18293903 + MIR SINE MIR 157 247 -15 1769 164 24 0 chr11 130490361 130490659 -18292813 - AluJb SINE Alu -7 305 1 2002 143 3 0 chr11 130491003 130491310 -18292162 + AluJb SINE Alu 2 309 -3 2331 86 0 0 chr11 130491830 130492131 -18291341 - AluSc SINE Alu -8 301 1 2081 78 0 0 chr11 130492142 130492410 -18291062 - AluY SINE Alu -43 268 1 397 273 171 32 chr11 130492564 130492751 -18290721 + L3 LINE CR1 592 804 -773 1946 122 49 0 chr11 130492836 130493122 -18290350 - AluJb SINE Alu -12 300 1 807 308 144 49 chr11 130493122 130493648 -18289824 + L3 LINE CR1 1001 1576 -1 2210 111 3 0 chr11 130493991 130494298 -18289174 + AluSp SINE Alu 1 308 -5 1384 83 0 0 chr11 130494298 130494478 -18288994 + AluSp SINE Alu 134 313 0 1516 181 10 58 chr11 130494662 130494831 -18288641 - AluJo SINE Alu -7 295 146 2121 103 0 17 chr11 130494831 130495131 -18288341 - AluSg SINE Alu -15 295 1 1516 181 10 58 chr11 130495131 130495270 -18288202 - AluJo SINE Alu -156 146 2 442 303 141 58 chr11 130495271 130495861 -18287611 - L2 LINE L2 -785 2529 1891 256 321 85 0 chr11 130497195 130497301 -18286171 + MIR SINE MIR 123 237 -25 304 342 148 29 chr11 130498166 130498584 -18284888 + L2 LINE L2 2124 2591 -723 1874 116 22 0 chr11 130498684 130498952 -18284520 + AluSx SINE Alu 1 274 -38 606 259 118 35 chr11 130499022 130499250 -18284222 - MIR SINE MIR -12 250 4 662 314 155 53 chr11 130499381 130499748 -18283724 + L3 LINE CR1 568 896 -681 2208 98 0 13 chr11 130499748 130500053 -18283419 + AluSq SINE Alu 1 301 -12 2359 83 0 6 chr11 130500062 130500376 -18283096 + AluSq SINE Alu 1 312 -1 662 314 155 53 chr11 130500376 130500556 -18282916 + L3 LINE CR1 903 1063 -514 1751 116 8 0 chr11 130500556 130500807 -18282665 + AluSq SINE Alu 54 306 -7 662 314 155 53 chr11 130500807 130501066 -18282406 + L3 LINE CR1 1063 1469 -108 2075 112 20 0 chr11 130501068 130501371 -18282101 + AluSc SINE Alu 1 309 0 1303 179 21 31 chr11 130501469 130501759 -18281713 + AluJb SINE Alu 26 312 0 2206 97 0 10 chr11 130501978 130502286 -18281186 - AluSx SINE Alu -7 305 1 1989 109 57 0 chr11 130502546 130502829 -18280643 - AluSg SINE Alu -10 300 2 2020 108 0 21 chr11 130502916 130503203 -18280269 - AluSc SINE Alu -25 284 4 1095 80 0 0 chr11 130503204 130503341 -18280131 - AluSq/x SINE Alu -176 137 1 236 375 0 0 chr11 130503353 130503441 -18280031 - MIR SINE MIR -68 140 53 288 250 108 75 chr11 130503705 130503825 -18279647 + MIR SINE MIR 17 140 -68 295 258 0 0 chr11 130504189 130504255 -18279217 - MIR SINE MIR -55 153 88 2341 68 0 19 chr11 130504320 130504630 -18278842 + AluY SINE Alu 1 304 -7 1985 124 0 45 chr11 130504648 130504962 -18278510 + AluSg SINE Alu 1 300 -10 2265 87 3 0 chr11 130505031 130505329 -18278143 - AluSq SINE Alu -14 299 1 1642 154 3 14 chr11 130505329 130505605 -18277867 + MER2 DNA MER2_type 71 345 0 811 183 0 0 chr11 130505781 130505912 -18277560 + AluJo/FLAM SINE Alu 1 131 -181 1975 144 0 3 chr11 130505912 130506210 -18277262 - AluSx SINE Alu -14 298 2 23 33 0 0 chr11 130506210 130506240 -18277232 + AT_rich Low_complexity Low_complexity 1 30 0 2469 171 58 52 chr11 130506254 130506804 -18276668 + L1M4 LINE L1 4749 5305 -841 2048 127 10 0 chr11 130506804 130507112 -18276360 + AluSp SINE Alu 3 313 0 2469 171 58 52 chr11 130507112 130507177 -18276295 + L1M4 LINE L1 5305 5368 -778 452 153 118 0 chr11 130507177 130507262 -18276210 - MLT1D LTR MaLR -13 492 398 384 185 0 0 chr11 130507263 130507328 -18276144 + L1MB7 LINE L1 5999 6063 -121 539 132 0 33 chr11 130507328 130507419 -18276053 - AluJb SINE Alu -176 136 49 1435 179 34 34 chr11 130507489 130507825 -18275647 - AluJo SINE Alu 0 312 1 384 156 0 0 chr11 130507829 130507893 -18275579 + L1MB8 LINE L1 6115 6178 0 2125 116 0 6 chr11 130507903 130508214 -18275258 + AluSc SINE Alu 1 309 0 253 292 0 21 chr11 130508256 130508352 -18275120 - MLT1K LTR MaLR -30 558 465 1012 151 36 12 chr11 130508502 130508668 -18274804 + AluJb SINE Alu 1 170 -142 31 44 0 0 chr11 130508698 130508743 -18274729 + AT_rich Low_complexity Low_complexity 1 45 0 671 186 51 0 chr11 130508762 130508880 -18274592 + FLAM_C SINE Alu 2 125 -18 671 113 21 0 chr11 130508889 130508986 -18274486 + AluJb SINE Alu 33 131 -181 2108 138 0 0 chr11 130509022 130509333 -18274139 + AluSx SINE Alu 1 311 -1 2300 89 0 0 chr11 130509492 130509794 -18273678 + AluY SINE Alu 1 302 -9 360 173 13 0 chr11 130509839 130509914 -18273558 + L1MB7 LINE L1 6039 6114 -70 1773 136 21 11 chr11 130509920 130510206 -18273266 + AluSx SINE Alu 7 295 -17 1744 98 4 0 chr11 130510216 130510450 -18273022 + AluSq SINE Alu 2 236 -77 279 295 82 8 chr11 130512442 130512564 -18270908 + MIR SINE MIR 106 236 -26 212 267 0 0 chr11 130512776 130512821 -18270651 + (CATATA)n Simple_repeat Simple_repeat 6 50 0 246 128 0 0 chr11 130512824 130512863 -18270609 + (TG)n Simple_repeat Simple_repeat 1 39 0 380 350 47 0 chr11 130513089 130513270 -18270202 + MIR SINE MIR 16 212 -50 2216 82 7 0 chr11 130513285 130513577 -18269895 + AluSq SINE Alu 1 294 -19 243 0 0 0 chr11 130513631 130513658 -18269814 + (TG)n Simple_repeat Simple_repeat 1 27 0 198 0 0 0 chr11 130513657 130513679 -18269793 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 204 292 0 0 chr11 130513785 130513833 -18269639 - L2 LINE L2 -86 3186 3139 213 121 0 0 chr11 130513897 130513930 -18269542 + (TG)n Simple_repeat Simple_repeat 2 34 0 270 0 0 0 chr11 130516086 130516116 -18267356 + (CCTG)n Simple_repeat Simple_repeat 4 33 0 733 212 0 0 chr11 130521850 130522022 -18261450 + FLAM_C SINE Alu 1 172 0 320 230 27 0 chr11 130522115 130522189 -18261283 - MIR SINE MIR -71 191 116 187 286 32 32 chr11 130522320 130522383 -18261089 - L3 LINE CR1 -99 1478 1416 1719 143 52 0 chr11 130522458 130522744 -18260728 - AluJo SINE Alu -10 302 2 2063 106 0 0 chr11 130522825 130523127 -18260345 - AluSq SINE Alu 0 312 11 2335 90 0 13 chr11 130523135 130523446 -18260026 - AluSx SINE Alu -5 307 1 396 151 139 0 chr11 130523570 130523656 -18259816 + MIR SINE MIR 117 214 -48 2112 110 10 0 chr11 130524205 130524514 -18258958 - AluSx SINE Alu 0 312 1 345 291 74 24 chr11 130524605 130524752 -18258720 - MIR SINE MIR -65 143 17 372 295 155 10 chr11 130524810 130525003 -18258469 + MIR SINE MIR 13 233 -29 2311 74 3 7 chr11 130525822 130526121 -18257351 + AluSx SINE Alu 1 298 -14 327 225 0 81 chr11 130527703 130527863 -18255609 + C-rich Low_complexity Low_complexity 4 150 0 198 0 0 0 chr11 130527966 130527988 -18255484 + (TGG)n Simple_repeat Simple_repeat 2 23 0 387 0 0 0 chr11 130528186 130528229 -18255243 + (CCG)n Simple_repeat Simple_repeat 1 43 0 22 35 0 0 chr11 130528308 130528337 -18255135 + GC_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr11 130529004 130529032 -18254440 + AT_rich Low_complexity Low_complexity 1 28 0 1918 122 31 0 chr11 130530209 130530496 -18252976 - AluSx SINE Alu -16 296 1 424 216 151 113 chr11 130530565 130530688 -18252784 - L2 LINE L2 -5 3308 3191 2226 98 3 0 chr11 130530688 130530985 -18252487 - AluSx SINE Alu -14 298 1 424 216 151 113 chr11 130530985 130530996 -18252476 - L2 LINE L2 -122 3191 3182 2105 103 0 7 chr11 130530996 130531298 -18252174 - AluSq SINE Alu -13 300 1 424 216 151 113 chr11 130531298 130531454 -18252018 - L2 LINE L2 -131 3182 3006 1850 138 13 16 chr11 130533219 130533523 -18249949 + AluJo SINE Alu 1 303 -9 1124 95 19 0 chr11 130533661 130533819 -18249653 - L1PB1 LINE L1 -3 6148 5988 232 380 28 0 chr11 130533826 130533934 -18249538 + MIR SINE MIR 123 233 -29 1619 129 3 66 chr11 130533968 130534255 -18249217 + AluSx SINE Alu 3 271 -41 893 321 72 59 chr11 130534476 130534596 -18248876 - L2 LINE L2 -195 3077 2960 1315 212 3 19 chr11 130534596 130534907 -18248565 - AluSg SINE Alu -4 306 1 893 321 72 59 chr11 130534907 130535379 -18248093 - L2 LINE L2 -312 2960 2496 2370 76 3 0 chr11 130535379 130535683 -18247789 + AluY SINE Alu 1 305 -6 893 321 72 59 chr11 130535683 130535796 -18247676 - L2 LINE L2 -776 2496 2386 1896 135 13 13 chr11 130535796 130536100 -18247372 + AluJb SINE Alu 3 306 -6 2020 113 3 7 chr11 130536107 130536241 -18247231 + AluSx SINE Alu 1 134 -178 2373 79 0 0 chr11 130536241 130536546 -18246926 + AluSg SINE Alu 1 305 -5 2020 113 3 7 chr11 130536546 130536704 -18246768 + AluSx SINE Alu 134 292 -20 893 321 72 59 chr11 130536704 130536716 -18246756 - L2 LINE L2 -891 2381 2371 2079 78 3 65 chr11 130536716 130537038 -18246434 + AluSp SINE Alu 1 302 -11 893 321 72 59 chr11 130537038 130537168 -18246304 - L2 LINE L2 -901 2371 2201 311 319 46 84 chr11 130537173 130537202 -18246270 + L1ME4a LINE L1 5836 5865 -256 2202 110 3 0 chr11 130537202 130537510 -18245962 + AluSp SINE Alu 1 309 -4 311 319 46 84 chr11 130537510 130537743 -18245729 + L1ME4a LINE L1 5865 6088 -33 1434 174 113 7 chr11 130537744 130538026 -18245446 - AluSx SINE Alu 0 312 1 1773 138 16 39 chr11 130538031 130538342 -18245130 - AluSx SINE Alu -6 306 3 180 0 0 0 chr11 130538352 130538372 -18245100 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3955 63 10 8 chr11 130538400 130538906 -18244566 - SVA Other Other 0 1386 880 1927 121 14 4 chr11 130539006 130539287 -18244185 - AluSx SINE Alu -28 284 1 295 298 101 19 chr11 130539308 130539466 -18244006 + L2 LINE L2 3134 3304 -9 1564 134 0 13 chr11 130539471 130539709 -18243763 + AluSx SINE Alu 6 240 -72 1854 164 7 0 chr11 130539888 130540193 -18243279 + AluSx SINE Alu 1 307 -5 1574 90 9 9 chr11 130540448 130540671 -18242801 + AluSq SINE Alu 1 223 -90 301 157 0 20 chr11 130540671 130540726 -18242746 + AluJo/FRAM SINE Alu 200 246 -56 22 0 0 0 chr11 130540745 130540767 -18242705 + AT_rich Low_complexity Low_complexity 1 22 0 1952 112 21 0 chr11 130541310 130541596 -18241876 - AluSx SINE Alu -20 292 1 617 131 224 0 chr11 130541659 130541766 -18241706 + FLAM_C SINE Alu 1 131 -2 2085 90 7 4 chr11 130541829 130542108 -18241364 - AluSx SINE Alu -16 296 17 261 228 0 18 chr11 130542110 130542167 -18241305 - AluJ/FLAM SINE Alu -244 58 3 593 155 21 0 chr11 130542288 130542385 -18241087 - 7SLRNA srpRNA srpRNA -10 310 212 701 97 0 0 chr11 130542406 130542499 -18240973 - HY4 scRNA scRNA 0 93 1 1414 137 9 4 chr11 130542499 130542725 -18240747 - 7SLRNA srpRNA srpRNA -93 227 1 1938 154 3 0 chr11 130542727 130543025 -18240447 - AluSx SINE Alu -13 299 1 25 0 0 0 chr11 130543033 130543058 -18240414 + AT_rich Low_complexity Low_complexity 1 25 0 834 120 8 0 chr11 130543058 130543175 -18240297 - FLAM_C SINE Alu -15 118 1 218 229 0 0 chr11 130543446 130543494 -18239978 + L2 LINE L2 3265 3312 -1 1384 98 7 88 chr11 130543671 130543977 -18239495 + AluY SINE Alu 22 302 -9 2124 110 3 0 chr11 130544232 130544522 -18238950 + AluSg SINE Alu 1 291 -19 5018 51 13 22 chr11 130544554 130545240 -18238232 + SVA Other Other 15 694 -692 279 283 54 11 chr11 130545735 130545827 -18237645 - MIR SINE MIR -62 146 51 392 250 94 89 chr11 130548202 130548273 -18235199 + MER5A DNA MER1_type 9 78 -111 2263 96 0 0 chr11 130548273 130548566 -18234906 + AluSx SINE Alu 5 297 -15 392 250 94 89 chr11 130548566 130548674 -18234798 + MER5A DNA MER1_type 78 189 0 180 0 0 0 chr11 130548980 130549000 -18234472 + (TC)n Simple_repeat Simple_repeat 1 20 0 2026 99 21 0 chr11 130549002 130549285 -18234187 - AluSq SINE Alu -24 289 1 805 168 15 0 chr11 130549289 130549420 -18234052 - FLAM_C SINE Alu 0 133 1 181 330 131 34 chr11 130551762 130551968 -18231504 + L2 LINE L2 3044 3269 -3 402 115 0 0 chr11 130551981 130552042 -18231430 + (GCTG)n Simple_repeat Simple_repeat 4 64 0 211 171 14 71 chr11 130552372 130552442 -18231030 + C-rich Low_complexity Low_complexity 3 68 0 1700 147 0 62 chr11 130552949 130553269 -18230203 + AluSx SINE Alu 1 300 -12 460 295 194 28 chr11 130553565 130553921 -18229551 + L2 LINE L2 2898 3312 -1 364 178 30 0 chr11 130553985 130554086 -18229386 + GA-rich Low_complexity Low_complexity 2 105 0 717 144 54 0 chr11 130554088 130554199 -18229273 + AluJo/FLAM SINE Alu 1 117 -195 1431 194 0 22 chr11 130554202 130554444 -18229028 - AluJo SINE Alu -41 271 34 7356 115 72 47 chr11 130554444 130554573 -18228899 - MER52C LTR ERV1 0 1278 1154 2021 106 7 0 chr11 130554573 130554883 -18228589 - AluSp SINE Alu 0 312 1 7356 115 72 47 chr11 130554883 130555998 -18227474 - MER52C LTR ERV1 -124 1154 1 1431 194 0 22 chr11 130555998 130556028 -18227444 - AluJo SINE Alu -278 34 5 1804 155 44 42 chr11 130556046 130556085 -18227387 - L1MB4 LINE L1 -6 6174 6137 1900 120 23 20 chr11 130556085 130556386 -18227086 + AluSx SINE Alu 1 302 -10 1804 155 44 42 chr11 130556386 130556707 -18226765 - L1MB4 LINE L1 -43 6137 5813 1287 119 6 0 chr11 130556754 130556931 -18226541 - AluSx SINE Alu -133 179 2 1321 194 72 46 chr11 130556935 130557192 -18226280 - L1MD3 LINE L1 -361 5822 5573 1953 128 40 10 chr11 130557192 130557496 -18225976 - AluSq SINE Alu 0 313 1 1321 194 72 46 chr11 130557496 130557667 -18225805 - L1MD3 LINE L1 -610 5573 5323 338 175 261 15 chr11 130557667 130557697 -18225775 - AluJ/FLAM SINE Alu -232 70 49 1686 150 16 38 chr11 130557697 130557827 -18225645 + AluJo SINE Alu 7 138 -174 2323 84 13 0 chr11 130557827 130558135 -18225337 + AluSp SINE Alu 1 312 -1 1686 150 16 38 chr11 130558135 130558317 -18225155 + AluJo SINE Alu 138 312 0 338 175 261 15 chr11 130558317 130558424 -18225048 - AluJ/FLAM SINE Alu -253 49 14 990 118 0 0 chr11 130558449 130558584 -18224888 + AluSx SINE Alu 1 135 -177 2053 107 0 3 chr11 130558619 130558943 -18224529 + AluSx SINE Alu 1 323 0 2157 125 0 0 chr11 130558943 130559256 -18224216 + AluSq SINE Alu 1 313 0 1253 82 0 18 chr11 130559264 130559435 -18224037 + AluSx SINE Alu 118 285 -25 1111 171 0 0 chr11 130559445 130559626 -18223846 + AluY SINE Alu 118 298 -13 1901 137 7 23 chr11 130559664 130559823 -18223649 - AluSx SINE Alu -18 294 141 2255 91 0 0 chr11 130559823 130560119 -18223353 - AluSg SINE Alu -14 296 1 1901 137 7 23 chr11 130560119 130560258 -18223214 - AluSx SINE Alu -171 141 1 403 184 0 0 chr11 130560262 130560338 -18223134 - FLAM_A SINE Alu -4 138 63 23 0 0 0 chr11 130560393 130560416 -18223056 + AT_rich Low_complexity Low_complexity 1 23 0 378 191 45 11 chr11 130560637 130560726 -18222746 + L1MC4 LINE L1 6966 7057 -985 2051 104 7 3 chr11 130560728 130561025 -18222447 + AluSx SINE Alu 1 298 -14 551 182 0 0 chr11 130561038 130561126 -18222346 - AluJo SINE Alu -11 301 214 768 210 0 0 chr11 130561129 130561267 -18222205 - AluJo SINE Alu -171 141 4 1658 195 30 8 chr11 130561280 130561649 -18221823 + L1MC4 LINE L1 7083 7459 -583 404 214 0 0 chr11 130561632 130561721 -18221751 + L1PA14 LINE L1 4236 4324 -1822 * 2335 39 4 0 chr11 130561723 130562044 -18221428 + AluY SINE Alu 1 322 0 276 250 0 0 chr11 130562046 130562106 -18221366 + MER99 DNA DNA 242 301 -527 3621 137 58 98 chr11 130562106 130562333 -18221139 + L1PA14 LINE L1 5101 5335 -826 1920 164 0 3 chr11 130562333 130562645 -18220827 - AluJb SINE Alu -1 311 1 3621 137 58 98 chr11 130562645 130562765 -18220707 + L1PA14 LINE L1 5335 5458 -703 2247 85 7 0 chr11 130562765 130563060 -18220412 - AluSx SINE Alu -15 297 1 3621 137 58 98 chr11 130563060 130563265 -18220207 + L1PA14 LINE L1 5458 5670 -491 1747 109 66 0 chr11 130563265 130563521 -18219951 + AluSq SINE Alu 1 273 -40 3621 137 58 98 chr11 130563521 130564070 -18219402 + L1PA14 LINE L1 5670 6161 0 775 159 45 0 chr11 130564063 130564220 -18219252 + L1MC4 LINE L1 7434 7597 -445 * 1707 151 38 3 chr11 130564223 130564514 -18218958 + AluJb SINE Alu 3 303 -9 605 44 0 67 chr11 130564515 130564605 -18218867 + HY4 scRNA scRNA 1 84 -9 1206 222 36 41 chr11 130564613 130565085 -18218387 + L1MC4 LINE L1 7584 8041 -1 1875 94 8 8 chr11 130565091 130565356 -18218116 - AluSx SINE Alu -47 265 1 21 0 0 0 chr11 130566368 130566389 -18217083 + AT_rich Low_complexity Low_complexity 1 21 0 932 215 6 0 chr11 130566582 130566745 -18216727 - AluJ SINE Alu -1 301 138 1062 220 4 0 chr11 130566749 130566990 -18216482 - AluSp SINE Alu -8 305 64 436 268 7 43 chr11 130566991 130567129 -18216343 - AluJ SINE Alu -175 137 5 39 0 0 0 chr11 130567138 130567177 -18216295 + AT_rich Low_complexity Low_complexity 1 39 0 1214 243 7 7 chr11 130567177 130567473 -18215999 + AluSq SINE Alu 4 299 -4 201 339 64 0 chr11 130567535 130567615 -18215857 + MIR SINE MIR 67 157 -105 1660 150 10 33 chr11 130567615 130567915 -18215557 + AluJb SINE Alu 1 293 -19 201 339 64 0 chr11 130567915 130567943 -18215529 + MIR SINE MIR 157 182 -80 234 0 0 0 chr11 130568390 130568416 -18215056 + (T)n Simple_repeat Simple_repeat 1 26 0 381 290 70 38 chr11 130569032 130569256 -18214216 + MIR SINE MIR 21 262 0 361 141 0 0 chr11 130569526 130569590 -18213882 + AluSc SINE Alu 71 134 -165 2162 106 3 3 chr11 130569590 130569893 -18213579 + AluSx SINE Alu 1 303 -9 1103 134 0 17 chr11 130569926 130570098 -18213374 + AluSg/x SINE Alu 132 300 -10 1076 129 133 57 chr11 130570191 130570470 -18213002 + AluSg SINE Alu 1 300 0 375 286 143 0 chr11 130570669 130570823 -18212649 - MIR3 SINE MIR -3 205 30 235 204 0 0 chr11 130572722 130572766 -18210706 + GA-rich Low_complexity Low_complexity 3 46 0 244 304 62 36 chr11 130573659 130573771 -18209701 - L2 LINE L2 -1 3271 3157 2193 99 17 0 chr11 130573839 130574141 -18209331 - AluSx SINE Alu -5 307 1 859 199 17 11 chr11 130574336 130574512 -18208960 + MIR SINE MIR 84 260 -2 224 298 96 0 chr11 130574510 130574604 -18208868 - L2 LINE L2 -243 3029 2927 * 1616 106 139 16 chr11 130574818 130575121 -18208351 + MER47A DNA MER2_type 27 366 0 229 243 10 48 chr11 130577938 130578041 -18205431 + G-rich Low_complexity Low_complexity 2 100 0 186 43 0 0 chr11 130578042 130578065 -18205407 + (GGGGA)n Simple_repeat Simple_repeat 4 26 0 24 0 0 0 chr11 130578163 130578187 -18205285 + GC_rich Low_complexity Low_complexity 1 24 0 1751 145 13 19 chr11 130579175 130579486 -18203986 - AluJo SINE Alu -1 311 3 227 239 75 15 chr11 130580833 130580900 -18202572 + MIR3 SINE MIR 9 79 -129 413 308 30 47 chr11 130581946 130582115 -18201357 + MIR SINE MIR 49 214 -48 966 214 42 42 chr11 130582129 130582367 -18201105 - MER90 LTR ERV1 0 575 338 2280 71 17 0 chr11 130582369 130582664 -18200808 + AluSx SINE Alu 1 300 -12 1885 152 3 3 chr11 130583406 130583708 -18199764 + AluJb SINE Alu 1 302 -10 2146 117 0 10 chr11 130583731 130584039 -18199433 + AluSx SINE Alu 1 305 -7 2118 102 3 0 chr11 130584603 130584926 -18198546 - AluSp SINE Alu 0 324 1 382 62 0 0 chr11 130585580 130585628 -18197844 + Alu SINE Alu 1 48 -260 180 0 0 0 chr11 130585628 130585648 -18197824 + (G)n Simple_repeat Simple_repeat 1 20 0 2133 99 3 0 chr11 130586134 130586473 -18196999 + AluSp SINE Alu 1 340 0 1824 139 3 41 chr11 130587036 130587353 -18196119 - AluSx SINE Alu -7 305 1 1900 154 3 3 chr11 130587376 130587682 -18195790 - AluJb SINE Alu -6 306 1 2170 98 3 0 chr11 130588424 130588720 -18194752 - AluSx SINE Alu -11 301 5 246 234 16 31 chr11 130588727 130588791 -18194681 - MER5A DNA MER1_type -118 71 9 216 0 0 0 chr11 130589029 130589053 -18194419 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 261 0 0 0 chr11 130589052 130589081 -18194391 + (CA)n Simple_repeat Simple_repeat 1 29 0 2071 122 0 0 chr11 130589134 130589428 -18194044 - AluSx SINE Alu -18 294 1 226 0 59 0 chr11 130589428 130589462 -18194010 + (TTTA)n Simple_repeat Simple_repeat 3 38 0 2052 107 0 3 chr11 130589463 130589752 -18193720 - AluSx SINE Alu -24 288 1 990 118 0 0 chr11 130589787 130589922 -18193550 - AluSq/x SINE Alu -177 135 1 338 197 174 32 chr11 130589947 130590054 -18193418 + AluJ/FLAM SINE Alu 14 46 -256 1686 150 16 38 chr11 130590054 130590236 -18193236 - AluJo SINE Alu 0 312 138 2323 84 13 0 chr11 130590236 130590544 -18192928 - AluSp SINE Alu -1 312 1 1686 150 16 38 chr11 130590544 130590674 -18192798 - AluJo SINE Alu -174 138 7 338 197 174 32 chr11 130590674 130590704 -18192768 + AluJ/FLAM SINE Alu 46 70 -232 1318 191 79 29 chr11 130590704 130590875 -18192597 + L1MC4 LINE L1 5323 5484 -699 1971 133 40 0 chr11 130590875 130591176 -18192296 + AluSq SINE Alu 1 313 0 1318 191 79 29 chr11 130591176 130591436 -18192036 + L1MC4 LINE L1 5484 5822 -361 1287 119 6 0 chr11 130591440 130591617 -18191855 + AluSx SINE Alu 2 179 -133 1631 179 47 9 chr11 130591664 130592005 -18191467 + L1MB4 LINE L1 5813 6166 -14 232 309 0 0 chr11 130596239 130596333 -18187139 + (TG)n Simple_repeat Simple_repeat 2 95 0 2879 36 44 14 chr11 130598477 130598839 -18184633 - SVA Other Other -1013 373 1 2300 99 14 0 chr11 130599426 130599720 -18183752 - AluSx SINE Alu -14 298 1 380 286 25 8 chr11 130599721 130599840 -18183632 - MIR3 SINE MIR -52 156 36 1915 142 55 0 chr11 130600239 130600528 -18182944 - AluSq SINE Alu -8 305 1 270 0 0 0 chr11 130601355 130601385 -18182087 + (T)n Simple_repeat Simple_repeat 1 30 0 71 14 0 72 chr11 130601555 130601694 -18181778 + AT_rich Low_complexity Low_complexity 1 129 0 535 297 0 27 chr11 130601815 130602034 -18181438 + AluYa5 SINE Alu 4 216 -95 689 210 8 0 chr11 130602107 130602231 -18181241 + FLAM_A SINE Alu 1 125 -8 2237 102 0 20 chr11 130602239 130602533 -18180939 + AluSg SINE Alu 1 288 -22 499 215 37 0 chr11 130602553 130602660 -18180812 + MIR SINE MIR 53 163 -99 1424 126 0 20 chr11 130602660 130602858 -18180614 + AluSc SINE Alu 83 276 -33 215 30 0 30 chr11 130602859 130602892 -18180580 + (TAA)n Simple_repeat Simple_repeat 1 32 0 2163 91 0 72 chr11 130602951 130603271 -18180201 + AluSq SINE Alu 1 297 -16 2456 78 7 0 chr11 130603428 130603722 -18179750 + AluSc SINE Alu 1 296 -13 339 282 22 24 chr11 130603758 130603893 -18179579 + FLAM_A SINE Alu 25 124 -9 204 111 0 0 chr11 130604058 130604094 -18179378 + (A)n Simple_repeat Simple_repeat 1 36 0 910 300 3 3 chr11 130604100 130604403 -18179069 + AluSq SINE Alu 1 303 0 2269 99 3 0 chr11 130604969 130605300 -18178172 - AluSp SINE Alu 0 332 1 556 289 16 55 chr11 130605957 130606268 -18177204 + AluSp SINE Alu 1 299 -4 21 0 0 0 chr11 130606579 130606600 -18176872 + GC_rich Low_complexity Low_complexity 1 21 0 213 39 0 0 chr11 130606620 130606646 -18176826 + (A)n Simple_repeat Simple_repeat 1 26 0 1681 144 16 75 chr11 130607060 130607408 -18176064 + AluJb SINE Alu 1 312 0 711 178 39 61 chr11 130608053 130608234 -18175238 - L1MA4 LINE L1 -1 6299 6123 1276 245 3 7 chr11 130608234 130608544 -18174928 + AluSg SINE Alu 1 309 -1 711 178 39 61 chr11 130608544 130608592 -18174880 - L1MA4 LINE L1 -177 6123 6075 2323 89 7 10 chr11 130608695 130608998 -18174474 - AluSq SINE Alu -11 302 1 331 242 40 20 chr11 130608998 130609097 -18174375 - MIR SINE MIR -99 163 63 1912 159 0 27 chr11 130609380 130609681 -18173791 - AluJb SINE Alu -19 293 1 2426 109 0 0 chr11 130609730 130610041 -18173431 + AluSx SINE Alu 1 311 -1 243 0 0 0 chr11 130610071 130610098 -18173374 + (T)n Simple_repeat Simple_repeat 1 27 0 180 0 0 0 chr11 130610321 130610341 -18173131 + (C)n Simple_repeat Simple_repeat 1 20 0 2178 161 26 37 chr11 130610620 130610932 -18172540 + L1MA4 LINE L1 5812 6119 -181 2340 107 3 3 chr11 130610932 130611241 -18172231 - AluSg SINE Alu -1 309 1 2178 161 26 37 chr11 130611241 130611420 -18172052 + L1MA4 LINE L1 6119 6298 -2 22 0 0 0 chr11 130611688 130611710 -18171762 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr11 130611769 130611792 -18171680 + AT_rich Low_complexity Low_complexity 1 23 0 2224 109 3 10 chr11 130612400 130612703 -18170769 - AluSx SINE Alu -7 305 5 1813 159 3 26 chr11 130612803 130613105 -18170367 - AluJb SINE Alu -17 295 1 1052 263 3 14 chr11 130613117 130613414 -18170058 - AluSq SINE Alu -5 298 5 23 0 0 0 chr11 130613486 130613509 -18169963 + AT_rich Low_complexity Low_complexity 1 23 0 277 265 29 0 chr11 130613852 130613920 -18169552 - MER5A DNA MER1_type -76 113 44 321 47 0 0 chr11 130614055 130614098 -18169374 + (T)n Simple_repeat Simple_repeat 1 43 0 23 0 0 0 chr11 130614098 130614121 -18169351 + AT_rich Low_complexity Low_complexity 1 23 0 2356 98 3 0 chr11 130614121 130614416 -18169056 - AluSp SINE Alu -17 296 1 2389 87 3 0 chr11 130614416 130614714 -18168758 - AluSc SINE Alu -9 300 2 787 214 13 6 chr11 130614716 130614904 -18168568 - FRAM SINE Alu 0 166 1 1417 94 0 0 chr11 130614919 130615090 -18168382 - AluSq SINE Alu -142 171 1 198 0 0 0 chr11 130615095 130615117 -18168355 + (T)n Simple_repeat Simple_repeat 1 22 0 198 0 0 0 chr11 130615249 130615271 -18168201 + (T)n Simple_repeat Simple_repeat 1 22 0 35 24 0 0 chr11 130615374 130615416 -18168056 + AT_rich Low_complexity Low_complexity 1 42 0 180 0 0 0 chr11 130615419 130615439 -18168033 + (G)n Simple_repeat Simple_repeat 1 20 0 675 0 0 0 chr11 130615547 130615622 -18167850 + (G)n Simple_repeat Simple_repeat 1 75 0 1716 126 141 0 chr11 130615837 130616106 -18167366 - AluSg SINE Alu -3 307 1 325 294 21 59 chr11 130616206 130616393 -18167079 - AluYa5 SINE Alu -3 298 119 270 0 0 0 chr11 130616393 130616423 -18167049 + (T)n Simple_repeat Simple_repeat 1 30 0 207 0 0 0 chr11 130616449 130616472 -18167000 + (G)n Simple_repeat Simple_repeat 1 23 0 26 0 0 0 chr11 130616570 130616596 -18166876 + AT_rich Low_complexity Low_complexity 1 26 0 26 0 0 0 chr11 130616714 130616740 -18166732 + AT_rich Low_complexity Low_complexity 1 26 0 243 0 0 0 chr11 130618004 130618031 -18165441 + (T)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr11 130618032 130618053 -18165419 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr11 130618200 130618223 -18165249 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr11 130618549 130618570 -18164902 + AT_rich Low_complexity Low_complexity 1 21 0 746 305 13 3 chr11 130618605 130618913 -18164559 + AluSp SINE Alu 2 312 -1 2068 113 45 0 chr11 130618970 130619262 -18164210 + AluJb SINE Alu 1 305 -7 26 30 0 0 chr11 130619539 130619572 -18163900 + AT_rich Low_complexity Low_complexity 1 33 0 36 0 0 0 chr11 130619722 130619758 -18163714 + AT_rich Low_complexity Low_complexity 1 36 0 661 231 35 12 chr11 130619842 130620011 -18163461 + MIR SINE MIR 88 260 -2 215 287 96 0 chr11 130620009 130620103 -18163369 - L2 LINE L2 -243 3029 2927 * 1639 106 139 16 chr11 130620317 130620620 -18162852 + MER47A DNA MER2_type 27 366 0 22 0 0 0 chr11 130621323 130621345 -18162127 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr11 130621619 130621644 -18161828 + AT_rich Low_complexity Low_complexity 1 25 0 2429 102 0 0 chr11 130621731 130622036 -18161436 - AluSx SINE Alu -7 305 1 396 353 8 8 chr11 130622058 130622293 -18161179 - AluSq SINE Alu 0 303 69 2267 87 11 0 chr11 130623599 130623886 -18159586 + AluSg1 SINE Alu 1 290 -19 284 291 82 0 chr11 130623891 130624001 -18159471 + MIR SINE MIR 32 150 -112 696 317 58 4 chr11 130626051 130626294 -18157178 - MIR SINE MIR -4 258 3 306 67 0 0 chr11 130627007 130627052 -18156420 + (TG)n Simple_repeat Simple_repeat 2 46 0 27 29 0 0 chr11 130627911 130627945 -18155527 + GC_rich Low_complexity Low_complexity 1 34 0 2719 48 0 0 chr11 130627997 130628307 -18155165 - AluY SINE Alu -1 310 1 596 210 0 8 chr11 130628320 130628439 -18155033 + MIR SINE MIR 90 207 -55 261 111 0 0 chr11 130628440 130628476 -18154996 + Alu SINE Alu 1 36 -266 484 186 0 0 chr11 130628476 130628562 -18154910 - AluJb SINE Alu -93 219 134 1543 102 5 0 chr11 130628562 130628767 -18154705 - AluSg/x SINE Alu -3 309 104 2346 81 0 17 chr11 130628783 130629078 -18154394 - AluSc SINE Alu -19 290 1 2251 108 0 7 chr11 130629083 130629379 -18154093 - AluSx SINE Alu -15 297 4 744 161 46 120 chr11 130629382 130629561 -18153911 + MLT2D LTR ERVL 214 376 -38 300 27 0 0 chr11 130629561 130629598 -18153874 + (CA)n Simple_repeat Simple_repeat 2 38 0 744 161 46 120 chr11 130629598 130629635 -18153837 + MLT2D LTR ERVL 376 414 0 672 176 16 8 chr11 130630039 130630164 -18153308 + FLAM_A SINE Alu 7 132 -10 300 330 139 17 chr11 130630228 130630516 -18152956 + L2 LINE L2 1692 2014 -1300 1032 189 0 11 chr11 130630525 130630705 -18152767 - FRAM SINE Alu 0 176 1 388 357 196 11 chr11 130630713 130630940 -18152532 + L2 LINE L2 2070 2254 -1018 1674 227 91 39 chr11 130630940 130631009 -18152463 - MLT1F LTR MaLR 0 542 478 2371 114 0 0 chr11 130631009 130631308 -18152164 + AluSx SINE Alu 1 299 -13 1674 227 91 39 chr11 130631308 130631753 -18151719 - MLT1F LTR MaLR -64 478 1 388 357 196 11 chr11 130631753 130631785 -18151687 + L2 LINE L2 2254 2279 -993 2422 100 0 0 chr11 130631785 130632121 -18151351 - AluSx SINE Alu 0 312 1 388 357 196 11 chr11 130632121 130632662 -18150810 + L2 LINE L2 2279 3019 -253 335 283 61 0 chr11 130632669 130632768 -18150704 + L2 LINE L2 3168 3272 0 2179 130 3 3 chr11 130633083 130633384 -18150088 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr11 130633422 130633444 -18150028 + AT_rich Low_complexity Low_complexity 1 22 0 6702 44 33 0 chr11 130633444 130634736 -18148736 - L1PA6 LINE L1 -6 6148 4844 2249 111 3 0 chr11 130634759 130635057 -18148415 - AluSc SINE Alu -10 299 1 646 306 156 57 chr11 130635059 130635320 -18148152 - L3 LINE CR1 -108 1469 1235 1855 112 8 0 chr11 130635320 130635569 -18147903 - AluSq SINE Alu -9 304 54 646 306 156 57 chr11 130635569 130635750 -18147722 - L3 LINE CR1 -342 1235 1073 2544 76 0 6 chr11 130635750 130636065 -18147407 - AluSq SINE Alu 0 313 1 2341 98 0 13 chr11 130636074 130636379 -18147093 - AluSq SINE Alu -12 301 1 646 306 156 57 chr11 130636379 130636746 -18146726 - L3 LINE CR1 -511 1066 568 612 259 118 35 chr11 130636877 130637105 -18146367 + MIR SINE MIR 4 250 -12 2000 116 22 0 chr11 130637175 130637443 -18146029 - AluSx SINE Alu -38 274 1 257 316 158 38 chr11 130637543 130637961 -18145511 - L2 LINE L2 -723 2591 2124 248 321 85 0 chr11 130638826 130638932 -18144540 - MIR SINE MIR -25 237 123 350 291 146 63 chr11 130640267 130640857 -18142615 + L2 LINE L2 1891 2529 -785 662 196 0 29 chr11 130640858 130640996 -18142476 + FLAM_C SINE Alu 2 135 -8 2296 102 0 0 chr11 130640997 130641290 -18142182 + AluSx SINE Alu 1 293 -19 2152 118 7 7 chr11 130641297 130641593 -18141879 + AluSp SINE Alu 2 297 -16 1903 146 0 39 chr11 130641789 130642098 -18141374 - AluJb SINE Alu -15 297 1 555 333 63 31 chr11 130642166 130642421 -18141051 + L2 LINE L2 3010 3272 0 1271 179 122 0 chr11 130642534 130642797 -18140675 - 7SLRNA srpRNA srpRNA -20 300 6 407 277 0 0 chr11 130644409 130644510 -18138962 - MIR SINE MIR -63 145 45 572 129 0 30 chr11 130645187 130645288 -18138184 + FLAM_C SINE Alu 44 141 -2 1126 171 0 16 chr11 130645393 130645408 -18138064 + AluSg/x SINE Alu 121 135 -177 1833 145 0 67 chr11 130645408 130645562 -18137910 + AluSx SINE Alu 1 123 -189 2133 137 0 0 chr11 130645562 130645861 -18137611 + AluSx SINE Alu 1 299 -13 1833 145 0 67 chr11 130645861 130646037 -18137435 + AluSx SINE Alu 123 309 -3 1126 171 0 16 chr11 130646037 130646214 -18137258 + AluSg/x SINE Alu 135 310 -2 2235 92 3 14 chr11 130646579 130646874 -18136598 + AluSx SINE Alu 6 297 -15 1840 155 3 21 chr11 130646886 130647185 -18136287 + AluJb SINE Alu 1 285 -27 181 259 35 17 chr11 130647200 130647258 -18136214 + L2 LINE L2 3185 3243 -29 2105 110 3 10 chr11 130647285 130647585 -18135887 + AluSx SINE Alu 5 302 -10 2215 80 0 17 chr11 130647750 130648050 -18135422 + AluY SINE Alu 2 296 -15 1174 186 18 9 chr11 130648062 130648218 -18135254 - AluJo SINE Alu -20 292 132 270 0 0 0 chr11 130648218 130648248 -18135224 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1174 186 18 9 chr11 130648248 130648311 -18135161 - AluJo SINE Alu -180 132 71 1654 184 3 34 chr11 130648371 130648514 -18134958 + AluJo SINE Alu 1 147 -165 1768 95 4 0 chr11 130648514 130648755 -18134717 + AluSp SINE Alu 64 305 -8 1654 184 3 34 chr11 130648755 130648932 -18134540 + AluJo SINE Alu 147 311 -1 437 311 78 28 chr11 130649707 130649887 -18133585 + MIR SINE MIR 20 208 -54 2531 52 0 0 chr11 130649917 130650222 -18133250 - AluY SINE Alu -4 307 3 606 309 48 0 chr11 130653204 130653372 -18130100 + MER91A DNA MER1_type 21 196 0 813 202 64 21 chr11 130653400 130653588 -18129884 - MIR SINE MIR 0 262 67 1273 116 0 0 chr11 130653657 130653830 -18129642 - AluJb SINE Alu -139 173 1 481 357 13 0 chr11 130653844 130653998 -18129474 + L2 LINE L2 3116 3271 -1 2183 48 33 0 chr11 130655122 130655440 -18128032 - AluY SINE Alu 0 327 1 366 308 75 0 chr11 130655567 130655700 -18127772 - MIR SINE MIR -6 256 114 226 402 19 0 chr11 130655704 130655811 -18127661 + L2 LINE L2 3164 3272 0 300 312 14 51 chr11 130655813 130655951 -18127521 - MIR3 SINE MIR -75 133 1 542 311 132 36 chr11 130656887 130657416 -18126056 - L2 LINE L2 -5 3267 2631 2355 88 0 0 chr11 130657416 130657712 -18125760 + AluSx SINE Alu 3 298 -14 542 311 132 36 chr11 130657712 130657992 -18125480 - L2 LINE L2 -641 2631 2379 319 300 97 66 chr11 130659345 130659572 -18123900 + L2 LINE L2 3027 3260 -12 1200 184 36 16 chr11 130659711 130659961 -18123511 + MIR SINE MIR 8 262 0 266 337 90 30 chr11 130659958 130660258 -18123214 - L2 LINE L2 0 3313 2996 * 313 226 0 0 chr11 130660759 130660821 -18122651 - MIR SINE MIR -71 137 76 476 274 75 3 chr11 130661048 130661204 -18122268 - MIR SINE MIR -51 157 33 334 320 29 40 chr11 130661232 130661407 -18122065 + MIR SINE MIR 33 205 -57 603 263 0 8 chr11 130662222 130662355 -18121117 + MIR3 SINE MIR 15 146 -62 24 67 0 0 chr11 130663537 130663582 -18119890 + GC_rich Low_complexity Low_complexity 1 45 0 21 36 0 0 chr11 130663678 130663706 -18119766 + GC_rich Low_complexity Low_complexity 1 28 0 218 130 22 22 chr11 130663797 130663843 -18119629 + (CGGGG)n Simple_repeat Simple_repeat 2 47 0 26 30 0 0 chr11 130664028 130664061 -18119411 + GC_rich Low_complexity Low_complexity 1 33 0 317 295 45 27 chr11 130665224 130665336 -18118136 - MIR SINE MIR -49 213 100 554 266 12 24 chr11 130665517 130665774 -18117698 - AluSg/x SINE Alu 0 400 146 3625 98 3 51 chr11 130665975 130666038 -18117434 + L1MA4 LINE L1 5520 5584 -716 1889 156 0 7 chr11 130666038 130666333 -18117139 + AluSx SINE Alu 1 293 -19 3625 98 3 51 chr11 130666333 130666591 -18116881 + L1MA4 LINE L1 5584 5853 -447 2146 88 0 33 chr11 130666591 130666898 -18116574 + AluSx SINE Alu 3 299 -13 2289 82 10 3 chr11 130666904 130667210 -18116262 + AluSx SINE Alu 5 312 0 3625 98 3 51 chr11 130667210 130667512 -18115960 + L1MA4 LINE L1 5858 6121 -179 2211 126 0 0 chr11 130667512 130667821 -18115651 - AluSx SINE Alu -1 311 3 204 333 31 79 chr11 130667855 130667970 -18115502 - MIR SINE MIR -29 233 133 1158 83 19 0 chr11 130667970 130668127 -18115345 + L1PB1 LINE L1 5988 6147 -4 204 333 31 79 chr11 130668127 130668239 -18115233 - MIR SINE MIR -129 133 17 1888 138 13 16 chr11 130668263 130668567 -18114905 - AluJo SINE Alu -9 303 1 394 256 77 30 chr11 130670341 130670497 -18112975 + L2 LINE L2 3006 3172 -141 2028 131 10 0 chr11 130670497 130670795 -18112677 + AluSq SINE Alu 1 301 -12 394 256 77 30 chr11 130670795 130670806 -18112666 + L2 LINE L2 3172 3181 -132 1557 108 0 0 chr11 130670806 130671020 -18112452 + AluSq SINE Alu 1 214 -99 603 144 162 9 chr11 130671025 130671171 -18112301 + FRAM SINE Alu 21 183 0 2231 88 0 0 chr11 130671174 130671491 -18111981 + AluSx SINE Alu 1 317 0 896 169 0 0 chr11 130671496 130671638 -18111834 + AluJb SINE Alu 1 142 -170 1535 114 75 0 chr11 130671640 130671868 -18111604 + AluSx SINE Alu 1 245 -67 299 220 0 76 chr11 130671891 130672009 -18111463 + L1ME3 LINE L1 6054 6162 0 180 0 0 0 chr11 130672191 130672211 -18111261 + (T)n Simple_repeat Simple_repeat 1 20 0 231 36 0 0 chr11 130672331 130672359 -18111113 + (A)n Simple_repeat Simple_repeat 1 28 0 746 272 30 10 chr11 130672760 130672962 -18110510 + MIR3 SINE MIR 2 207 -1 682 125 0 0 chr11 130673049 130673153 -18110319 - FLAM_C SINE Alu -4 139 36 333 250 188 0 chr11 130673282 130673378 -18110094 + MER81 DNA DNA 1 114 0 257 368 16 16 chr11 130674131 130674256 -18109216 + MIR3 SINE MIR 35 159 -49 1017 178 23 0 chr11 130675190 130675364 -18108108 - MER45A DNA AcHobo 0 178 1 1110 284 216 25 chr11 130678017 130678703 -18104769 - L3 LINE CR1 0 1577 761 188 269 32 108 chr11 130678739 130678832 -18104640 - L3 LINE CR1 -926 651 566 981 196 0 22 chr11 130680831 130681010 -18102462 + FAM SINE Alu 1 175 0 705 143 107 0 chr11 130681094 130681206 -18102266 - FLAM_C SINE Alu -17 126 3 880 233 0 0 chr11 130681261 130681420 -18102052 - FRAM SINE Alu -6 160 2 2324 92 0 7 chr11 130681504 130681809 -18101663 + AluSq SINE Alu 1 303 -10 264 391 33 24 chr11 130681867 130682079 -18101393 - L2 LINE L2 -555 2759 2546 192 111 0 0 chr11 130686185 130686221 -18097251 + (TA)n Simple_repeat Simple_repeat 1 36 0 2285 109 0 3 chr11 130689510 130689823 -18093649 - AluSx SINE Alu 0 312 1 342 327 31 6 chr11 130690569 130690728 -18092744 + CT-rich Low_complexity Low_complexity 2 164 0 1840 176 0 0 chr11 130691379 130691669 -18091803 - AluJo SINE Alu -22 290 1 2291 75 14 0 chr11 130691710 130692004 -18091468 - AluSp SINE Alu -15 298 1 208 158 13 132 chr11 130692832 130692908 -18090564 + L2 LINE L2 2691 2757 -557 620 184 83 0 chr11 130692965 130693074 -18090398 - FLAM_C SINE Alu -25 118 1 317 326 39 118 chr11 130693310 130693442 -18090030 + L2 LINE L2 2804 2945 -327 1491 133 112 49 chr11 130693442 130693728 -18089744 + AluJo SINE Alu 1 304 -8 317 326 39 118 chr11 130693728 130694104 -18089368 + L2 LINE L2 2945 3272 0 937 168 5 41 chr11 130694221 130694418 -18089054 - AluJo SINE Alu 0 312 123 1877 80 0 0 chr11 130694769 130695006 -18088466 - AluSg/x SINE Alu 0 310 74 837 259 80 13 chr11 130695028 130695045 -18088427 - MIR SINE MIR 0 262 248 2188 108 3 0 chr11 130695045 130695351 -18088121 + AluSx SINE Alu 1 307 -5 837 259 80 13 chr11 130695351 130695572 -18087900 - MIR SINE MIR -14 248 8 1311 177 48 81 chr11 130695597 130695716 -18087756 + AluJb SINE Alu 1 122 -180 1563 121 132 11 chr11 130695716 130695989 -18087483 - AluSg1 SINE Alu -3 306 1 1311 177 48 81 chr11 130695989 130696179 -18087293 + AluJb SINE Alu 122 300 -2 631 287 88 9 chr11 130696325 130696541 -18086931 + MIR SINE MIR 2 234 -28 311 298 219 28 chr11 130698093 130698271 -18085201 - MIR SINE MIR -4 258 47 297 322 0 11 chr11 130700297 130700384 -18083088 + L2 LINE L2 3180 3265 -7 442 234 27 112 chr11 130700392 130700458 -18083014 - MIR3 SINE MIR -1 207 137 2171 114 7 20 chr11 130700458 130700755 -18082717 - AluSg SINE Alu -17 293 1 442 234 27 112 chr11 130700755 130700876 -18082596 - MIR3 SINE MIR -71 137 36 1922 138 55 0 chr11 130701275 130701564 -18081908 - AluSq SINE Alu -8 305 1 1833 136 4 11 chr11 130702508 130702781 -18080691 - AluSx SINE Alu -41 271 1 2002 152 3 3 chr11 130702804 130703106 -18080366 - AluJb SINE Alu -10 302 1 2249 102 17 0 chr11 130703848 130704143 -18079329 - AluSx SINE Alu -12 300 1 2554 56 0 0 chr11 130704265 130704567 -18078905 - AluY SINE Alu -9 302 1 2394 97 3 3 chr11 130705950 130706261 -18077211 - AluSq SINE Alu 0 313 3 194 79 0 26 chr11 130706261 130706299 -18077173 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2053 120 7 3 chr11 130706299 130706582 -18076890 - AluSx SINE Alu -28 284 1 2433 55 7 3 chr11 130706862 130707153 -18076319 + AluY SINE Alu 1 292 -19 539 209 122 0 chr11 130707168 130707283 -18076189 + FLAM_C SINE Alu 5 133 0 956 143 0 0 chr11 130707300 130707433 -18076039 + AluSq/x SINE Alu 1 133 -179 25 0 0 0 chr11 130707557 130707582 -18075890 + AT_rich Low_complexity Low_complexity 1 25 0 189 0 0 0 chr11 130707682 130707703 -18075769 + (C)n Simple_repeat Simple_repeat 1 21 0 207 0 0 0 chr11 130707729 130707752 -18075720 + (A)n Simple_repeat Simple_repeat 1 23 0 347 243 58 0 chr11 130707945 130708025 -18075447 - MIR SINE MIR -70 138 60 2206 109 0 13 chr11 130708924 130709228 -18074244 + AluJb SINE Alu 1 300 -12 2348 103 3 0 chr11 130709601 130709912 -18073560 - AluSx SINE Alu 0 312 1 648 153 0 0 chr11 130710409 130710507 -18072965 + AluJ/FLAM SINE Alu 2 99 -213 276 259 62 0 chr11 130710743 130710824 -18072648 - L2 LINE L2 -1 3312 3227 201 282 128 0 chr11 130710926 130711004 -18072468 - MIR SINE MIR -71 191 104 888 65 0 49 chr11 130711452 130711609 -18071863 - AluSg/x SINE Alu 0 315 165 2029 137 0 17 chr11 130711666 130711966 -18071506 - AluSx SINE Alu -17 295 1 1528 174 66 28 chr11 130712020 130712307 -18071165 - AluJb SINE Alu -4 308 11 1905 122 44 4 chr11 130712342 130712613 -18070859 - AluSx SINE Alu -30 282 1 1766 159 7 26 chr11 130712749 130713057 -18070415 + AluJo SINE Alu 1 302 -10 273 182 74 125 chr11 130713089 130713209 -18070263 - L1ME3A LINE L1 0 6170 6060 2044 132 7 0 chr11 130713209 130713498 -18069974 + AluSx SINE Alu 1 291 -21 273 182 74 125 chr11 130713498 130713553 -18069919 - L1ME3A LINE L1 -110 6060 6004 247 132 0 0 chr11 130713557 130713595 -18069877 + Alu SINE Alu 249 286 -16 1139 230 92 0 chr11 130713605 130713888 -18069584 - L1ME3A LINE L1 -196 5974 5666 1101 155 0 0 chr11 130713888 130714056 -18069416 - AluSg/x SINE Alu -8 304 137 2127 93 48 3 chr11 130714060 130714349 -18069123 - AluSc SINE Alu -7 302 1 2191 121 3 10 chr11 130714850 130715163 -18068309 - AluSx SINE Alu -1 311 1 299 333 39 47 chr11 130715198 130715327 -18068145 + L2 LINE L2 3129 3256 -16 2212 93 21 0 chr11 130715363 130715653 -18067819 + AluSx SINE Alu 3 298 -14 2810 29 46 14 chr11 130716240 130716591 -18066881 + SVA Other Other 7 368 -1018 1126 105 0 7 chr11 130716691 130716844 -18066628 + AluSg/x SINE Alu 145 296 -14 298 146 0 0 chr11 130717098 130717146 -18066326 - HY4 scRNA scRNA 0 93 46 2124 116 32 117 chr11 130717146 130717344 -18066128 + MER4B LTR ERV1 1 214 -552 1849 179 0 13 chr11 130717344 130717657 -18065815 + AluJb SINE Alu 4 312 0 2124 116 32 117 chr11 130717657 130717729 -18065743 + MER4B LTR ERV1 214 291 -475 2393 81 7 7 chr11 130717729 130718037 -18065435 + AluSq SINE Alu 2 309 -4 2124 116 32 117 chr11 130718037 130718299 -18065173 + MER4B LTR ERV1 291 608 -158 2327 87 0 3 chr11 130718299 130718587 -18064885 + AluSq SINE Alu 6 292 -21 2124 116 32 117 chr11 130718587 130718734 -18064738 + MER4B LTR ERV1 608 766 0 370 62 0 0 chr11 130718734 130718782 -18064690 - HY4 scRNA scRNA -44 49 2 996 151 54 0 chr11 130718901 130719067 -18064405 - AluJb SINE Alu -2 310 136 229 125 25 0 chr11 130719075 130719115 -18064357 - Alu SINE Alu -135 173 133 2293 115 0 3 chr11 130719115 130719428 -18064044 - AluSq SINE Alu -1 312 1 1656 143 32 0 chr11 130719430 130719681 -18063791 - AluSx SINE Alu -19 293 35 4002 91 43 0 chr11 130719681 130720210 -18063262 + MER41A LTR ERV1 3 554 0 1099 176 0 0 chr11 130720215 130720385 -18063087 - AluJo SINE Alu -142 170 1 540 101 39 163 chr11 130720429 130720581 -18062891 - LTR23 LTR ERV1 0 437 308 1984 93 50 4 chr11 130720581 130720861 -18062611 - AluSq SINE Alu -8 305 13 540 101 39 163 chr11 130720861 130720886 -18062586 - LTR23 LTR ERV1 -129 308 282 659 155 10 0 chr11 130720889 130720992 -18062480 + FLAM_C SINE Alu 2 105 -38 225 0 0 0 chr11 130721010 130721035 -18062437 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1645 114 33 4 chr11 130721035 130721307 -18062165 - LTR23 LTR ERV1 -157 280 1 2234 101 7 0 chr11 130721405 130721702 -18061770 - AluSx SINE Alu -13 299 1 1689 175 3 10 chr11 130721900 130722203 -18061269 + AluY SINE Alu 1 301 -10 2235 159 71 14 chr11 130722222 130722657 -18060815 + MER21B LTR ERV1 402 861 -2 2540 70 0 10 chr11 130722954 130723267 -18060205 - AluY SINE Alu 0 311 2 2298 120 0 9 chr11 130723305 130723621 -18059851 - AluSq SINE Alu 0 313 1 1273 141 10 26 chr11 130724498 130724690 -18058782 + MER5A DNA MER1_type 1 189 0 446 287 75 23 chr11 130724923 130725097 -18058375 + MIR SINE MIR 3 185 -77 883 127 14 28 chr11 130725150 130725292 -18058180 - FLAM_C SINE Alu -1 142 3 194 212 0 0 chr11 130725387 130725420 -18058052 + L2 LINE L2 3264 3296 -17 786 152 0 0 chr11 130725517 130725629 -18057843 - AluJb SINE Alu -64 248 137 2090 136 23 0 chr11 130725629 130725931 -18057541 - AluSx SINE Alu -3 309 1 2099 117 0 0 chr11 130725966 130726240 -18057232 + AluSx SINE Alu 2 275 -37 903 38 30 8 chr11 130726245 130726376 -18057096 + (GAAA)n Simple_repeat Simple_repeat 4 137 0 454 223 265 18 chr11 130726500 130726666 -18056806 + MIR SINE MIR 7 213 -49 26 30 0 0 chr11 130727826 130727859 -18055613 + GC_rich Low_complexity Low_complexity 1 33 0 199 134 30 119 chr11 130728965 130729032 -18054440 + MIR3 SINE MIR 109 169 -39 2374 70 3 10 chr11 130729534 130729835 -18053637 - AluSq SINE Alu -14 299 1 2192 108 7 3 chr11 130730478 130730773 -18052699 + AluSx SINE Alu 1 296 -16 1514 145 50 50 chr11 130731250 130731532 -18051940 + AluJb SINE Alu 14 295 -17 1425 171 18 33 chr11 130731601 130731876 -18051596 - AluJo SINE Alu -41 271 1 466 300 147 0 chr11 130732779 130732929 -18050543 + MIR3 SINE MIR 23 194 -14 2326 84 7 3 chr11 130732985 130733282 -18050190 - AluSx SINE Alu -14 298 1 989 105 53 11 chr11 130733282 130733472 -18050000 + Tigger7 DNA MER2_type 2236 2433 -54 249 130 65 0 chr11 130733574 130733651 -18049821 + T-rich Low_complexity Low_complexity 4 85 0 1181 111 0 23 chr11 130733659 130733821 -18049651 - AluY SINE Alu -18 293 134 2125 111 0 20 chr11 130733821 130734147 -18049325 - AluSc SINE Alu 0 309 2 819 151 6 24 chr11 130734639 130734805 -18048667 - Tigger2 DNA MER2_type -55 2663 2501 1140 93 0 0 chr11 130734807 130734957 -18048515 - AluSc SINE Alu -4 305 156 910 125 180 5 chr11 130734957 130735157 -18048315 - Tigger2 DNA MER2_type -211 2507 2273 395 147 15 0 chr11 130735147 130735215 -18048257 - Tigger2 DNA MER2_type -2649 69 1 * 231 188 0 0 chr11 130735273 130735321 -18048151 + (TG)n Simple_repeat Simple_repeat 2 49 0 2247 111 0 3 chr11 130735322 130735620 -18047852 - AluSx SINE Alu -15 297 1 1630 198 3 39 chr11 130735625 130735933 -18047539 - AluJb SINE Alu -15 297 1 1255 343 0 78 chr11 130735943 130736132 -18047340 - AluSq SINE Alu -4 309 156 2421 68 0 26 chr11 130736132 130736439 -18047033 - AluSg SINE Alu -11 299 1 1255 343 0 78 chr11 130736439 130736584 -18046888 - AluSq SINE Alu -157 156 1 1802 162 35 0 chr11 130736610 130736900 -18046572 + AluJo SINE Alu 1 300 -12 2211 105 14 0 chr11 130737247 130737541 -18045931 + AluSx SINE Alu 1 298 -14 766 155 9 0 chr11 130737554 130737670 -18045802 + FLAM_C SINE Alu 2 118 -25 1107 134 0 12 chr11 130737768 130737932 -18045540 + AluSg SINE Alu 1 162 -148 776 218 47 18 chr11 130738044 130738214 -18045258 - FRAM SINE Alu -3 173 1 1527 123 0 18 chr11 130738655 130738883 -18044589 + AluSq SINE Alu 90 313 0 691 199 7 43 chr11 130738890 130739031 -18044441 + FAM SINE Alu 1 136 -49 867 103 0 0 chr11 130739140 130739247 -18044225 + AluSg/x SINE Alu 126 232 -78 264 367 43 24 chr11 130739791 130740001 -18043471 + L2 LINE L2 2546 2759 -555 2394 66 3 10 chr11 130740059 130740363 -18043109 - AluY SINE Alu -9 302 1 1206 45 0 0 chr11 130740363 130740497 -18042975 - AluSc SINE Alu -175 134 1 1939 139 65 34 chr11 130740542 130740895 -18042577 + THE1B LTR MaLR 1 364 0 2234 110 7 0 chr11 130741008 130741300 -18042172 - AluSg SINE Alu -6 304 11 1728 200 11 0 chr11 130741312 130741615 -18041857 - AluJb SINE Alu 0 306 1 1225 198 49 19 chr11 130741642 130741905 -18041567 - REP3 LTR ERV 0 562 292 3361 214 26 85 chr11 130741930 130742960 -18040512 - LTR5 LTR ERVK 0 969 1 2022 109 14 10 chr11 130742962 130743255 -18040217 - AluSg SINE Alu -16 294 1 1237 219 45 7 chr11 130743270 130743539 -18039933 - REP3 LTR ERV -257 305 27 250 241 0 0 chr11 130743598 130743652 -18039820 + L1MC4a LINE L1 6476 6529 -1279 1843 163 7 26 chr11 130743692 130743998 -18039474 + AluJb SINE Alu 1 300 -12 342 274 109 45 chr11 130744002 130744203 -18039269 + L1MC4 LINE L1 7526 7739 -303 296 298 131 0 chr11 130744348 130744516 -18038956 + L1MC4 LINE L1 7853 8042 0 1591 148 115 13 chr11 130744671 130744975 -18038497 - MER1B DNA MER1_type -1 338 4 2213 93 30 20 chr11 130745197 130745499 -18037973 - AluSx SINE Alu -7 305 1 275 250 186 40 chr11 130746573 130746697 -18036775 + L2 LINE L2 2924 3065 -248 182 263 92 92 chr11 130746841 130746917 -18036555 + L2 LINE L2 3145 3220 -52 870 215 0 6 chr11 130747126 130747289 -18036183 - AluSc SINE Alu -16 293 132 2619 26 0 13 chr11 130747290 130747593 -18035879 - AluYa5 SINE Alu -12 299 1 287 299 108 19 chr11 130747614 130747771 -18035701 + L2 LINE L2 3134 3304 -9 1654 134 0 13 chr11 130747776 130748014 -18035458 + AluSx SINE Alu 6 240 -72 1963 164 7 0 chr11 130748193 130748498 -18034974 + AluSx SINE Alu 1 307 -5 1666 90 9 9 chr11 130748753 130748976 -18034496 + AluSq SINE Alu 1 223 -90 294 157 0 20 chr11 130748976 130749031 -18034441 + AluJo/FRAM SINE Alu 200 246 -56 22 0 0 0 chr11 130749050 130749072 -18034400 + AT_rich Low_complexity Low_complexity 1 22 0 2064 112 21 0 chr11 130749615 130749901 -18033571 - AluSx SINE Alu -20 292 1 618 131 224 0 chr11 130749964 130750071 -18033401 + FLAM_C SINE Alu 1 131 -2 2564 61 0 0 chr11 130750134 130750429 -18033043 - AluY SINE Alu -16 295 1 365 233 145 25 chr11 130750458 130750506 -18032966 + L1MC5 LINE L1 7734 7775 -186 1857 100 17 0 chr11 130750506 130750746 -18032726 + AluSx SINE Alu 41 284 -28 477 0 0 0 chr11 130750746 130750799 -18032673 + (CA)n Simple_repeat Simple_repeat 2 54 0 365 233 145 25 chr11 130750799 130750908 -18032564 + L1MC5 LINE L1 7774 7911 -50 2246 92 0 0 chr11 130750927 130751211 -18032261 + AluSg SINE Alu 13 296 -14 536 188 20 10 chr11 130751213 130751314 -18032158 + AluJo SINE Alu 44 145 -167 2218 112 3 3 chr11 130751314 130751610 -18031862 + AluSp SINE Alu 1 296 -17 242 241 12 96 chr11 130751885 130751968 -18031504 + L2 LINE L2 3187 3262 -10 1610 91 0 30 chr11 130752084 130752314 -18031158 - AluSg/x SINE Alu -9 301 79 279 70 0 0 chr11 130752314 130752357 -18031115 - Alu SINE Alu -259 43 1 390 313 97 36 chr11 130752435 130752630 -18030842 - L1ME3 LINE L1 -265 5897 5691 651 281 42 89 chr11 130752635 130752879 -18030593 - L2 LINE L2 -1 3312 3058 1887 122 73 0 chr11 130752879 130753166 -18030306 - AluSg SINE Alu -2 308 1 * 2195 122 0 13 chr11 130753166 130753469 -18030003 - AluSx SINE Alu -13 299 1 651 281 42 89 chr11 130753469 130753630 -18029842 - L2 LINE L2 -558 2755 2926 1090 186 104 5 chr11 130753708 130753928 -18029544 - AluJo SINE Alu -22 290 49 2012 218 263 12 chr11 130753933 130753957 -18029515 - L2 LINE L2 -577 2737 2720 765 198 134 0 chr11 130753957 130754114 -18029358 + MER45A DNA AcHobo 1 178 0 2012 218 263 12 chr11 130754114 130754841 -18028631 - L2 LINE L2 -594 2720 1797 806 146 0 156 chr11 130754879 130755084 -18028388 - FRAM SINE Alu -2 174 2 584 213 64 0 chr11 130755089 130755230 -18028242 - L2 LINE L2 -1618 1696 1547 572 289 132 0 chr11 130755251 130755441 -18028031 + L2 LINE L2 924 1138 -2176 594 233 256 8 chr11 130755468 130755674 -18027798 - L2 LINE L2 -2356 958 804 1814 151 13 33 chr11 130755674 130755973 -18027499 - AluJb SINE Alu -19 293 1 594 233 256 8 chr11 130755973 130756028 -18027444 - L2 LINE L2 -2510 804 632 226 259 116 48 chr11 130756280 130756427 -18027045 - L1ME3 LINE L1 -2392 5416 5260 2214 97 3 7 chr11 130756512 130756802 -18026670 - AluSx SINE Alu -22 290 2 2190 99 10 3 chr11 130756810 130757103 -18026369 - AluSq SINE Alu -14 299 5 22 0 0 0 chr11 130757108 130757130 -18026342 + AT_rich Low_complexity Low_complexity 1 22 0 1475 203 163 2 chr11 130757149 130757639 -18025833 + L1ME1 LINE L1 5237 5861 -305 1968 92 57 21 chr11 130757648 130757930 -18025542 + AluSg SINE Alu 1 292 -18 801 161 0 44 chr11 130758497 130758634 -18024838 + FLAM_C SINE Alu 7 137 -6 1662 186 7 0 chr11 130759353 130759627 -18023845 + AluSx SINE Alu 1 276 -36 642 133 125 25 chr11 130759643 130759763 -18023709 + AluJo/FLAM SINE Alu 1 132 -170 484 250 17 17 chr11 130759766 130759882 -18023590 - FLAM_A SINE Alu -26 116 1 1559 163 43 0 chr11 130759993 130760251 -18023221 - AluSx SINE Alu -25 287 19 309 194 173 84 chr11 130760344 130760535 -18022937 + Charlie4 DNA MER1_type 1751 1958 -3 234 0 0 0 chr11 130762024 130762050 -18021422 + (GGA)n Simple_repeat Simple_repeat 1 26 0 2199 65 4 0 chr11 130762825 130763088 -18020384 - AluSx SINE Alu -48 264 1 296 284 20 20 chr11 130763091 130763193 -18020279 + MIR3 SINE MIR 84 185 -23 1616 130 108 4 chr11 130763780 130764049 -18019423 - AluSp SINE Alu -16 297 1 1830 167 10 13 chr11 130764049 130764217 -18019255 - AluJb SINE Alu -14 298 130 1958 138 16 7 chr11 130764217 130764521 -18018951 - AluSx SINE Alu -4 308 2 1830 167 10 13 chr11 130764521 130764651 -18018821 - AluJb SINE Alu -182 130 1 822 180 15 97 chr11 130765037 130765117 -18018355 - MER5A DNA MER1_type 0 189 104 2298 111 0 0 chr11 130765117 130765415 -18018057 - AluSx SINE Alu -14 298 1 822 180 15 97 chr11 130765415 130765540 -18017932 - MER5A DNA MER1_type -85 104 1 236 336 43 47 chr11 130766142 130766353 -18017119 + MIR SINE MIR 42 251 -11 1989 140 0 56 chr11 130767942 130768128 -18015344 - AluSq SINE Alu -9 304 142 2476 56 30 0 chr11 130768128 130768430 -18015042 - AluY SINE Alu 0 311 1 1989 140 0 56 chr11 130768430 130768565 -18014907 - AluSq SINE Alu -171 142 1 2477 130 5 17 chr11 130768565 130768974 -18014498 - Tigger2 DNA MER2_type -1571 1147 744 1825 110 4 4 chr11 130769014 130769259 -18014213 + AluSq SINE Alu 55 299 -14 672 102 0 41 chr11 130769259 130769357 -18014115 - AluJo/FLAM SINE Alu -184 128 35 2827 117 108 147 chr11 130769413 130769884 -18013588 - Tigger2 DNA MER2_type -1959 759 210 867 112 0 0 chr11 130769884 130770000 -18013472 - AluSg/x SINE Alu -18 294 179 2827 117 108 147 chr11 130770000 130770203 -18013269 - Tigger2 DNA MER2_type -2508 210 1 821 184 0 0 chr11 130770262 130770387 -18013085 + FLAM_A SINE Alu 1 125 -8 2141 118 0 7 chr11 130770428 130770724 -18012748 + AluSq SINE Alu 1 294 -19 261 0 0 0 chr11 130770778 130770807 -18012665 + (TG)n Simple_repeat Simple_repeat 1 29 0 216 0 0 0 chr11 130770806 130770830 -18012642 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 287 231 204 9 chr11 130770877 130770985 -18012487 - L2 LINE L2 -5 3267 3139 213 121 0 0 chr11 130771049 130771082 -18012390 + (TG)n Simple_repeat Simple_repeat 2 34 0 364 98 0 16 chr11 130771307 130771368 -18012104 + AluSp/q SINE Alu 242 301 -2 2122 138 10 0 chr11 130771483 130771779 -18011693 - AluSx SINE Alu -11 301 3 2071 116 61 0 chr11 130771886 130772179 -18011293 - AluSp SINE Alu -2 311 1 33 43 0 29 chr11 130772276 130772319 -18011153 + AT_rich Low_complexity Low_complexity 1 44 -23 2271 94 0 7 chr11 130772319 130772649 -18010823 + AluSp SINE Alu 1 328 0 33 43 0 29 chr11 130772649 130772673 -18010799 + AT_rich Low_complexity Low_complexity 44 67 0 1647 120 139 8 chr11 130772706 130772973 -18010499 + AluSg1 SINE Alu 1 302 -7 762 169 0 8 chr11 130772973 130773091 -18010381 - AluJb SINE Alu -194 118 2 338 22 44 0 chr11 130773626 130773671 -18009801 - MER50 LTR ERV1 -189 545 499 833 232 0 12 chr11 130773680 130773848 -18009624 - FRAM SINE Alu 0 166 1 2066 122 0 4 chr11 130773913 130774218 -18009254 - AluSg SINE Alu 0 306 3 1853 132 30 56 chr11 130774220 130774524 -18008948 - AluSx SINE Alu -14 298 3 216 0 0 0 chr11 130774871 130774895 -18008577 + (T)n Simple_repeat Simple_repeat 1 24 0 290 140 20 0 chr11 130775446 130775496 -18007976 + AluSq/x SINE Alu 85 135 -168 1367 141 31 113 chr11 130775496 130775822 -18007650 + AluJb SINE Alu 1 299 -13 2332 78 0 0 chr11 130776318 130776648 -18006824 - AluSc SINE Alu 0 330 1 192 271 85 0 chr11 130777043 130777102 -18006370 - MIR SINE MIR -124 138 75 2051 118 17 0 chr11 130777104 130777391 -18006081 - AluSp SINE Alu -21 292 1 440 279 175 26 chr11 130777458 130777612 -18005860 - MER5A DNA MER1_type 0 189 13 841 157 15 0 chr11 130777768 130777902 -18005570 + FLAM_C SINE Alu 1 136 -7 1304 133 0 0 chr11 130778058 130778239 -18005233 - AluY SINE Alu -6 305 125 2320 92 3 3 chr11 130778243 130778547 -18004925 - AluSx SINE Alu -8 304 1 201 244 0 0 chr11 130778864 130778905 -18004567 - MIR SINE MIR -123 85 45 2253 112 3 0 chr11 130779339 130779642 -18003830 - AluSp SINE Alu -9 304 1 1752 175 11 0 chr11 130779676 130779962 -18003510 + AluJb SINE Alu 10 298 -14 1886 141 7 30 chr11 130779966 130780271 -18003201 + AluSx SINE Alu 1 298 -14 584 108 216 0 chr11 130780370 130780481 -18002991 - L1MC1 LINE L1 -19 6314 6180 1251 185 62 0 chr11 130780490 130780750 -18002722 + L1MC1 LINE L1 6046 6321 -12 1289 162 182 4 chr11 130780754 130781007 -18002465 + AluJo SINE Alu 1 298 -14 587 202 8 23 chr11 130781008 130781137 -18002335 + FLAM_C SINE Alu 1 127 -6 883 155 0 0 chr11 130781152 130781281 -18002191 + AluSg SINE Alu 1 129 -181 203 287 93 19 chr11 130781706 130781734 -18001738 - MIR SINE MIR -80 182 158 1687 161 10 30 chr11 130781734 130782033 -18001439 - AluJb SINE Alu -19 293 1 203 287 93 19 chr11 130782033 130782112 -18001360 - MIR SINE MIR -104 158 67 2516 74 0 3 chr11 130782174 130782473 -18000999 - AluSq SINE Alu -15 298 1 1799 128 102 0 chr11 130782936 130783202 -18000270 - AluSx SINE Alu -19 293 1 1919 149 14 31 chr11 130783477 130783833 -17999639 + MER47A DNA MER2_type 17 366 0 2301 89 3 3 chr11 130783993 130784295 -17999177 - AluSp SINE Alu -11 302 1 1017 208 39 24 chr11 130784565 130784772 -17998700 - AluSg/x SINE Alu -17 293 84 1916 111 0 15 chr11 130784800 130785071 -17998401 + AluSx SINE Alu 33 299 -13 298 146 0 0 chr11 130785324 130785372 -17998100 - HY4 scRNA scRNA 0 93 46 2124 116 32 117 chr11 130785372 130785570 -17997902 + MER4B LTR ERV1 1 214 -552 1849 179 0 13 chr11 130785570 130785883 -17997589 + AluJb SINE Alu 4 312 0 2124 116 32 117 chr11 130785883 130785955 -17997517 + MER4B LTR ERV1 214 291 -475 2393 81 7 7 chr11 130785955 130786263 -17997209 + AluSq SINE Alu 2 309 -4 2124 116 32 117 chr11 130786263 130786525 -17996947 + MER4B LTR ERV1 291 608 -158 2327 87 0 3 chr11 130786525 130786813 -17996659 + AluSq SINE Alu 6 292 -21 2124 116 32 117 chr11 130786813 130786960 -17996512 + MER4B LTR ERV1 608 766 0 370 62 0 0 chr11 130786960 130787008 -17996464 - HY4 scRNA scRNA -44 49 2 996 151 54 0 chr11 130787127 130787293 -17996179 - AluJb SINE Alu -2 310 136 243 104 21 62 chr11 130787301 130787341 -17996131 - Alu SINE Alu -135 173 134 2342 108 0 3 chr11 130787341 130787655 -17995817 - AluSq SINE Alu 0 313 1 2351 104 7 0 chr11 130787686 130787984 -17995488 - AluSx SINE Alu -12 300 1 428 319 77 40 chr11 130788811 130789059 -17994413 + L2 LINE L2 3015 3271 -1 2442 98 0 0 chr11 130789100 130789407 -17994065 - AluSc SINE Alu -2 307 1 183 343 55 0 chr11 130790616 130790689 -17992783 - L3 LINE CR1 -1498 79 3 2344 89 0 0 chr11 130791550 130791855 -17991617 - AluSg SINE Alu 0 305 1 917 197 50 46 chr11 130792788 130793006 -17990466 + MIR SINE MIR 6 224 -38 1914 167 0 16 chr11 130793762 130794079 -17989393 + AluJo SINE Alu 1 312 0 261 320 157 43 chr11 130794557 130794907 -17988565 - L2 LINE L2 -5 3308 2919 271 264 27 45 chr11 130795307 130795387 -17988085 - MER112 DNA MER1_type -1 259 180 2035 63 0 16 chr11 130795387 130795642 -17987830 + AluY SINE Alu 1 251 -60 271 264 27 45 chr11 130795642 130795671 -17987801 - MER112 DNA MER1_type -80 180 152 686 205 8 0 chr11 130795687 130795804 -17987668 + FLAM_A SINE Alu 8 125 -17 2214 109 0 17 chr11 130795812 130796105 -17987367 + AluSg SINE Alu 1 288 -22 591 234 40 95 chr11 130796125 130796232 -17987240 + MIR SINE MIR 53 164 -98 1535 101 0 20 chr11 130796232 130796431 -17987041 + AluSc SINE Alu 83 277 -32 215 30 0 30 chr11 130796431 130796464 -17987008 + (TAA)n Simple_repeat Simple_repeat 1 32 0 591 234 40 95 chr11 130796464 130796523 -17986949 + MIR SINE MIR 163 208 -54 2227 82 0 69 chr11 130796523 130796842 -17986630 + AluSq SINE Alu 1 297 -16 591 234 40 95 chr11 130796842 130796895 -17986577 + MIR SINE MIR 208 262 0 2447 78 7 0 chr11 130796999 130797293 -17986179 + AluSc SINE Alu 1 296 -13 1380 196 29 18 chr11 130797319 130797594 -17985878 + AluJo SINE Alu 11 288 -24 215 245 0 0 chr11 130797622 130797675 -17985797 + A-rich Low_complexity Low_complexity 1 53 0 29 0 0 0 chr11 130797903 130797932 -17985540 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr11 130798066 130798093 -17985379 + AT_rich Low_complexity Low_complexity 1 27 0 344 54 0 54 chr11 130798106 130798162 -17985310 + (A)n Simple_repeat Simple_repeat 1 53 0 235 282 127 35 chr11 130798236 130798378 -17985094 + HAL1b LINE L1 1187 1341 -7 201 74 0 0 chr11 130798521 130798548 -17984924 + (TCC)n Simple_repeat Simple_repeat 1 27 0 313 233 97 10 chr11 130798896 130798999 -17984473 - MIR SINE MIR 0 262 151 410 178 89 69 chr11 130799055 130799156 -17984316 + MIR SINE MIR 50 152 -110 531 263 21 62 chr11 130799168 130799262 -17984210 - MIR SINE MIR -14 248 165 2291 93 7 10 chr11 130799262 130799564 -17983908 - AluSq SINE Alu -12 301 1 531 263 21 62 chr11 130799564 130799663 -17983809 - MIR SINE MIR -97 165 63 1912 159 0 27 chr11 130799946 130800247 -17983225 - AluJb SINE Alu -19 293 1 1534 134 146 8 chr11 130800296 130800580 -17982892 + AluSg1 SINE Alu 1 319 0 28 0 0 0 chr11 130801473 130801501 -17981971 + AT_rich Low_complexity Low_complexity 1 28 0 249 182 0 0 chr11 130801839 130801894 -17981578 + A-rich Low_complexity Low_complexity 1 55 0 239 282 127 35 chr11 130801969 130802111 -17981361 + HAL1b LINE L1 1187 1341 -7 201 74 0 0 chr11 130802253 130802280 -17981192 + (TCC)n Simple_repeat Simple_repeat 1 27 0 363 188 89 69 chr11 130802802 130802903 -17980569 + MIR SINE MIR 50 152 -110 492 263 21 62 chr11 130802915 130803009 -17980463 - MIR SINE MIR -14 248 165 2112 112 7 16 chr11 130803009 130803314 -17980158 - AluSp SINE Alu -11 302 1 492 263 21 62 chr11 130803314 130803413 -17980059 - MIR SINE MIR -97 165 63 1912 159 0 27 chr11 130803696 130803997 -17979475 - AluJb SINE Alu -19 293 1 2322 114 0 0 chr11 130804046 130804344 -17979128 + AluSx SINE Alu 1 298 -14 275 239 257 18 chr11 130804360 130804473 -17978999 + L2 LINE L2 3173 3312 -1 1906 122 54 0 chr11 130804539 130804818 -17978654 + AluJb SINE Alu 1 294 -18 500 191 9 19 chr11 130806638 130806743 -17976729 + FLAM_A SINE Alu 26 129 -13 531 269 168 0 chr11 130807545 130807694 -17975778 - MER5A DNA MER1_type -2 187 14 214 213 27 27 chr11 130807777 130807852 -17975620 + T-rich Low_complexity Low_complexity 1 75 0 2311 99 7 0 chr11 130807864 130808158 -17975314 - AluSp SINE Alu -17 296 1 2389 87 3 0 chr11 130808158 130808456 -17975016 - AluSc SINE Alu -9 300 2 787 214 13 6 chr11 130808458 130808646 -17974826 - FRAM SINE Alu 0 166 1 1374 77 12 6 chr11 130808661 130808831 -17974641 - AluSq SINE Alu -142 171 1 853 192 166 66 chr11 130808838 130809109 -17974363 - AluJo SINE Alu 0 302 5 2449 55 7 3 chr11 130809124 130809415 -17974057 - AluY SINE Alu -19 292 1 2489 77 3 0 chr11 130809692 130809992 -17973480 - AluY SINE Alu -10 301 1 221 229 0 0 chr11 130810120 130810168 -17973304 - L2 LINE L2 -1 3312 3265 789 120 8 0 chr11 130810439 130810556 -17972916 + FLAM_C SINE Alu 1 118 -15 25 0 0 0 chr11 130810556 130810581 -17972891 + AT_rich Low_complexity Low_complexity 1 25 0 2069 147 3 0 chr11 130810589 130810881 -17972591 + AluSx SINE Alu 1 293 -19 1514 137 9 4 chr11 130810889 130811115 -17972357 + 7SLRNA srpRNA srpRNA 1 227 -93 655 97 0 0 chr11 130811115 130811208 -17972264 + HY4 scRNA scRNA 1 93 0 550 155 21 0 chr11 130811229 130811326 -17972146 + 7SLRNA srpRNA srpRNA 212 310 -10 1125 148 8 137 chr11 130811447 130811506 -17971966 + AluJo SINE Alu 3 68 -244 2394 75 0 0 chr11 130811506 130811788 -17971684 + AluSx SINE Alu 17 298 -14 1125 148 8 137 chr11 130811788 130811891 -17971581 + AluJo SINE Alu 68 121 -191 2343 108 3 0 chr11 130811891 130812196 -17971276 + AluSp SINE Alu 1 306 -7 1125 148 8 137 chr11 130812196 130812295 -17971177 + AluJo SINE Alu 121 231 -81 226 203 51 17 chr11 130812295 130812354 -17971118 + AluS SINE Alu 18 78 -225 2350 102 0 0 chr11 130812385 130812678 -17970794 + AluSx SINE Alu 1 293 -19 2152 118 7 7 chr11 130812685 130812981 -17970491 + AluSp SINE Alu 2 297 -16 234 0 0 0 chr11 130812998 130813024 -17970448 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 207 267 0 0 chr11 130813133 130813178 -17970294 + L2 LINE L2 3266 3310 -3 808 211 20 0 chr11 130813227 130813379 -17970093 - AluJb SINE Alu -24 288 134 234 313 119 15 chr11 130813731 130813865 -17969607 + L2 LINE L2 2935 3082 -231 589 302 98 41 chr11 130816305 130816535 -17966937 + L2 LINE L2 2150 2404 -910 1486 150 135 19 chr11 130816535 130816668 -17966804 - AluJo SINE Alu -14 298 182 2372 83 3 3 chr11 130816668 130816968 -17966504 - AluSg SINE Alu -10 300 1 1486 150 135 19 chr11 130816968 130817101 -17966371 - AluJo SINE Alu -130 182 1 589 302 98 41 chr11 130817101 130817185 -17966287 + L2 LINE L2 2404 2482 -832 590 193 9 0 chr11 130817342 130817451 -17966021 - AluJb SINE Alu -22 290 181 2305 103 0 3 chr11 130817574 130817865 -17965607 + AluSx SINE Alu 1 290 -22 229 259 116 48 chr11 130817950 130818097 -17965375 + L1ME3 LINE L1 5260 5416 -2392 530 237 256 8 chr11 130818349 130818404 -17965068 + L2 LINE L2 632 672 -2642 1811 154 13 33 chr11 130818404 130818703 -17964769 + AluJb SINE Alu 1 293 -19 530 237 256 8 chr11 130818703 130818909 -17964563 + L2 LINE L2 672 958 -2356 532 289 132 0 chr11 130818936 130819126 -17964346 - L2 LINE L2 -2176 1138 924 564 214 16 0 chr11 130819162 130819288 -17964184 + L2 LINE L2 1569 1696 -1618 811 146 0 156 chr11 130819293 130819498 -17963974 + FRAM SINE Alu 2 174 -2 1813 230 263 12 chr11 130819536 130820263 -17963209 + L2 LINE L2 1797 2720 -594 704 204 134 0 chr11 130820263 130820420 -17963052 - MER45A DNA AcHobo 0 178 1 1813 230 263 12 chr11 130820420 130820444 -17963028 + L2 LINE L2 2720 2737 -577 1096 186 104 5 chr11 130820449 130820669 -17962803 + AluJo SINE Alu 49 290 -22 577 280 42 91 chr11 130820747 130820908 -17962564 + L2 LINE L2 2926 3093 -220 2193 122 0 13 chr11 130820908 130821211 -17962261 + AluSx SINE Alu 1 299 -13 1943 115 73 0 chr11 130821211 130821498 -17961974 + AluSg SINE Alu 1 308 -2 577 280 42 91 chr11 130821498 130821742 -17961730 + L2 LINE L2 3091 3312 -1 382 318 97 36 chr11 130821747 130821942 -17961530 + L1ME3 LINE L1 5691 5897 -265 1414 120 130 36 chr11 130822020 130822296 -17961176 + AluSg SINE Alu 1 302 -8 237 355 219 0 chr11 130822421 130822576 -17960896 - L2 LINE L2 -7 3306 3118 28 0 0 0 chr11 130823309 130823337 -17960135 + AT_rich Low_complexity Low_complexity 1 28 0 188 35 35 0 chr11 130824230 130824259 -17959213 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1527 134 146 8 chr11 130824261 130824514 -17958958 - AluSg1 SINE Alu -21 288 1 1004 119 0 0 chr11 130824597 130824731 -17958741 + AluSq/x SINE Alu 1 134 -178 2219 106 0 13 chr11 130824733 130825045 -17958427 + AluSg SINE Alu 1 308 -2 1972 123 62 3 chr11 130825074 130825366 -17958106 - AluSx SINE Alu -3 309 1 2249 101 7 0 chr11 130825564 130825861 -17957611 + AluSx SINE Alu 1 299 -13 1581 121 33 7 chr11 130825959 130826232 -17957240 + LTR23 LTR ERV1 1 280 -157 225 0 0 0 chr11 130826232 130826257 -17957215 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 615 155 0 0 chr11 130826281 130826378 -17957094 - AluJ/FLAM SINE Alu -214 98 2 594 98 35 161 chr11 130826381 130826406 -17957066 + LTR23 LTR ERV1 282 309 -128 1990 93 50 4 chr11 130826406 130826686 -17956786 + AluSq SINE Alu 13 305 -8 594 98 35 161 chr11 130826686 130826834 -17956638 + LTR23 LTR ERV1 309 433 -4 840 138 13 26 chr11 130826901 130827053 -17956419 + AluJo SINE Alu 21 170 -142 3789 91 43 0 chr11 130827058 130827587 -17955885 - MER41A LTR ERV1 0 554 3 1661 143 32 0 chr11 130827587 130827838 -17955634 + AluSx SINE Alu 35 293 -19 2205 121 3 3 chr11 130827840 130828153 -17955319 + AluSq SINE Alu 1 313 0 235 125 25 0 chr11 130828153 130828193 -17955279 + Alu SINE Alu 133 173 -135 1001 151 54 0 chr11 130828201 130828367 -17955105 + AluJb SINE Alu 136 310 -2 369 62 0 0 chr11 130828486 130828534 -17954938 + HY4 scRNA scRNA 2 49 -44 1584 149 6 185 chr11 130828534 130828681 -17954791 - MER4E LTR ERV1 0 766 594 2324 90 0 3 chr11 130828681 130828969 -17954503 - AluSq SINE Alu -21 292 6 1584 149 6 185 chr11 130828969 130829252 -17954220 - MER4E LTR ERV1 -172 594 437 2221 87 7 7 chr11 130829252 130829539 -17953933 - AluSq SINE Alu -25 288 2 1584 149 6 185 chr11 130829539 130829611 -17953861 - MER4E LTR ERV1 -329 437 354 1894 163 0 22 chr11 130829611 130829930 -17953542 - AluJb SINE Alu 0 312 1 2367 104 7 0 chr11 130829960 130830259 -17953213 - AluSx SINE Alu -11 301 1 370 319 77 40 chr11 130831086 130831334 -17952138 + L2 LINE L2 3015 3271 -1 2378 108 0 0 chr11 130831375 130831682 -17951790 - AluSc SINE Alu -2 307 1 2360 89 0 0 chr11 130833825 130834130 -17949342 - AluSg SINE Alu 0 305 1 851 197 50 46 chr11 130835066 130835284 -17948188 + MIR SINE MIR 6 224 -38 1910 158 0 10 chr11 130836040 130836337 -17947135 + AluJo SINE Alu 1 294 -18 224 333 83 44 chr11 130836835 130837015 -17946457 - L2 LINE L2 -5 3308 3122 308 243 28 28 chr11 130837585 130837665 -17945807 - MER112 DNA MER1_type -1 259 177 2052 63 0 16 chr11 130837665 130837920 -17945552 + AluY SINE Alu 1 251 -60 308 243 28 28 chr11 130837920 130837946 -17945526 - MER112 DNA MER1_type -82 178 153 672 218 8 0 chr11 130837958 130838082 -17945390 + FLAM_A SINE Alu 1 125 -8 2133 123 0 17 chr11 130838089 130838382 -17945090 + AluSg SINE Alu 1 288 -22 538 239 40 95 chr11 130838402 130838509 -17944963 + MIR SINE MIR 53 164 -98 1541 101 0 20 chr11 130838509 130838708 -17944764 + AluSc SINE Alu 83 277 -32 215 30 0 30 chr11 130838708 130838741 -17944731 + (TAA)n Simple_repeat Simple_repeat 1 32 0 538 239 40 95 chr11 130838741 130838800 -17944672 + MIR SINE MIR 163 208 -54 2223 85 0 69 chr11 130838800 130839119 -17944353 + AluSq SINE Alu 1 297 -16 538 239 40 95 chr11 130839119 130839172 -17944300 + MIR SINE MIR 208 262 0 2548 71 0 0 chr11 130839276 130839572 -17943900 + AluSc SINE Alu 1 296 -13 1317 206 28 21 chr11 130839589 130839875 -17943597 + AluJo SINE Alu 1 288 -14 180 0 0 0 chr11 130839937 130839957 -17943515 + (A)n Simple_repeat Simple_repeat 1 20 0 239 282 127 35 chr11 130840032 130840174 -17943298 + HAL1b LINE L1 1187 1341 -7 201 74 0 0 chr11 130840317 130840344 -17943128 + (TCC)n Simple_repeat Simple_repeat 1 27 0 290 233 97 10 chr11 130840692 130840795 -17942677 - MIR SINE MIR 0 262 151 379 178 89 69 chr11 130840851 130840952 -17942520 + MIR SINE MIR 50 152 -110 498 264 21 57 chr11 130840964 130841057 -17942415 - MIR SINE MIR -14 248 164 2252 99 7 10 chr11 130841057 130841360 -17942112 - AluSq SINE Alu -11 302 1 498 264 21 57 chr11 130841360 130841459 -17942013 - MIR SINE MIR -98 164 63 1933 147 0 27 chr11 130841742 130842041 -17941431 - AluJb SINE Alu -19 293 3 203 274 77 26 chr11 130842069 130842186 -17941286 + MER5A DNA MER1_type 64 186 -3 * 260 319 35 26 chr11 130842090 130842203 -17941269 - MER5A DNA MER1_type -74 115 2 1936 137 47 7 chr11 130842621 130842920 -17940552 + AluJo SINE Alu 1 311 -1 1247 173 25 25 chr11 130842933 130843211 -17940261 - MER90 LTR ERV1 -297 278 1 2507 52 3 58 chr11 130845969 130846298 -17937174 - AluSp SINE Alu -2 311 1 2426 81 10 0 chr11 130846522 130846820 -17936652 + AluSq SINE Alu 1 301 -12 1890 151 13 13 chr11 130846828 130847133 -17936339 + AluJb SINE Alu 6 310 -2 296 312 101 0 chr11 130847642 130847751 -17935721 - MIR SINE MIR -69 139 20 2051 136 7 7 chr11 130847913 130848207 -17935265 - AluJb SINE Alu -18 294 1 1766 176 6 40 chr11 130849802 130849994 -17933478 - AluJo SINE Alu 0 312 134 2504 73 0 10 chr11 130849994 130850307 -17933165 - AluSg SINE Alu 0 310 1 820 165 0 0 chr11 130850310 130850437 -17933035 - AluJo/FLAM SINE Alu -185 127 1 2335 91 3 0 chr11 130851595 130851903 -17931569 + AluSx SINE Alu 3 311 -1 203 322 138 0 chr11 130852022 130852109 -17931363 + L2 LINE L2 3174 3272 0 2074 135 0 0 chr11 130852265 130852561 -17930911 + AluSx SINE Alu 3 298 -14 226 100 60 0 chr11 130853452 130853502 -17929970 + T-rich Low_complexity Low_complexity 5 57 0 2201 112 3 3 chr11 130856493 130856805 -17926667 - AluSq SINE Alu 0 313 2 2364 87 3 0 chr11 130858309 130858621 -17924851 - AluSp SINE Alu 0 313 1 2672 88 3 43 chr11 130858804 130859112 -17924360 + THE1B LTR MaLR 4 296 -68 2058 121 10 0 chr11 130859112 130859402 -17924070 - AluSp SINE Alu -20 293 1 2672 88 3 43 chr11 130859402 130859469 -17924003 + THE1B LTR MaLR 296 364 0 2336 106 0 0 chr11 130860746 130861058 -17922414 - AluSx SINE Alu 0 312 1 342 327 31 6 chr11 130861803 130861962 -17921510 + CT-rich Low_complexity Low_complexity 2 164 0 1795 176 3 0 chr11 130862613 130862902 -17920570 - AluJo SINE Alu -22 290 1 2261 94 3 0 chr11 130862943 130863241 -17920231 - AluSp SINE Alu -14 299 1 208 158 13 132 chr11 130864069 130864145 -17919327 + L2 LINE L2 2691 2757 -557 620 184 83 0 chr11 130864202 130864311 -17919161 - FLAM_C SINE Alu -25 118 1 1419 145 111 48 chr11 130864679 130864968 -17918504 + AluJb SINE Alu 1 307 -5 848 261 88 0 chr11 130864974 130865189 -17918283 - MIR SINE MIR -21 241 8 1290 181 48 81 chr11 130865214 130865333 -17918139 + AluJb SINE Alu 1 122 -180 1541 124 132 11 chr11 130865333 130865606 -17917866 - AluSg1 SINE Alu -3 306 1 1290 181 48 81 chr11 130865606 130865796 -17917676 + AluJb SINE Alu 122 300 -2 529 304 88 14 chr11 130865942 130866159 -17917313 + MIR SINE MIR 2 234 -28 326 302 214 28 chr11 130867708 130867890 -17915582 - MIR SINE MIR 0 262 47 269 333 0 11 chr11 130869912 130869999 -17913473 + L2 LINE L2 3180 3265 -7 457 239 27 92 chr11 130870007 130870069 -17913403 - MIR3 SINE MIR -1 207 143 2062 120 7 20 chr11 130870069 130870370 -17913102 - AluSg SINE Alu -13 297 1 457 239 27 92 chr11 130870370 130870491 -17912981 - MIR3 SINE MIR -65 143 36 1809 142 55 0 chr11 130870890 130871179 -17912293 - AluSq SINE Alu -8 305 1 186 379 0 0 chr11 130871492 130871579 -17911893 + L2 LINE L2 2289 2375 -939 2008 109 0 26 chr11 130872014 130872326 -17911146 - AluJb SINE Alu 0 312 9 474 279 55 3 chr11 130873369 130873541 -17909931 - MIR3 SINE MIR -63 145 2 616 129 0 30 chr11 130874185 130874286 -17909186 + FLAM_C SINE Alu 44 141 -2 1138 152 0 83 chr11 130874406 130874636 -17908836 + AluSx SINE Alu 1 211 -101 35 0 0 0 chr11 130874678 130874713 -17908759 + AT_rich Low_complexity Low_complexity 1 35 0 393 287 75 23 chr11 130874756 130874930 -17908542 - MIR SINE MIR -77 185 3 1273 141 10 26 chr11 130875163 130875355 -17908117 - MER5A DNA MER1_type 0 189 1 2127 131 0 0 chr11 130876232 130876538 -17906934 + AluSx SINE Alu 1 306 -6 1041 185 0 0 chr11 130876539 130876717 -17906755 + AluSg/x SINE Alu 133 310 -2 1755 137 10 20 chr11 130877081 130877381 -17906091 + AluSx SINE Alu 6 302 -10 2169 120 7 3 chr11 130879022 130879331 -17904141 + AluSx SINE Alu 1 310 -2 21 95 0 0 chr11 130881285 130881348 -17902124 + GC_rich Low_complexity Low_complexity 1 63 0 23 33 0 0 chr11 130881525 130881555 -17901917 + GC_rich Low_complexity Low_complexity 1 30 0 184 237 102 17 chr11 130884511 130884570 -17898902 + L3 LINE CR1 569 632 -945 446 336 45 65 chr11 130885385 130885721 -17897751 - L2 LINE L2 -9 3263 2935 26 0 0 0 chr11 130888302 130888328 -17895144 + AT_rich Low_complexity Low_complexity 1 26 0 1760 129 30 48 chr11 130888332 130888627 -17894845 + AluJb SINE Alu 1 290 -22 2153 114 0 0 chr11 130888641 130888938 -17894534 + AluSg SINE Alu 1 297 -13 747 217 30 39 chr11 130891058 130891261 -17892211 + MIR SINE MIR 11 211 -51 554 251 108 12 chr11 130891442 130891609 -17891863 + MIR3 SINE MIR 21 203 -5 2379 126 8 19 chr11 130891754 130892128 -17891344 - L1PB4 LINE L1 -4 6152 5783 245 131 0 82 chr11 130892231 130892292 -17891180 - L1PB4 LINE L1 -367 5789 5734 2250 95 0 0 chr11 130893114 130893410 -17890062 - AluSg SINE Alu -13 297 2 26 0 0 0 chr11 130893501 130893527 -17889945 + AT_rich Low_complexity Low_complexity 1 26 0 210 309 0 0 chr11 130893643 130893698 -17889774 - L2 LINE L2 -6 3307 3253 2184 115 0 0 chr11 130893710 130894022 -17889450 - AluSx SINE Alu 0 312 1 601 357 89 30 chr11 130894215 130894741 -17888731 - L2 LINE L2 -337 2977 2421 262 346 111 21 chr11 130896249 130896492 -17886980 - L2 LINE L2 -17 3255 2991 2218 108 0 16 chr11 130896500 130896816 -17886656 + AluSx SINE Alu 1 311 -1 231 36 0 0 chr11 130897340 130897368 -17886104 + (A)n Simple_repeat Simple_repeat 1 28 0 1166 173 25 25 chr11 130897381 130897659 -17885813 - MER90 LTR ERV1 -297 278 1 2142 107 3 7 chr11 130898945 130899254 -17884218 - AluSx SINE Alu -4 308 1 357 273 91 51 chr11 130899258 130899381 -17884091 - MIR SINE MIR -6 256 122 2244 98 0 0 chr11 130899381 130899676 -17883796 + AluSc SINE Alu 1 295 -14 357 273 91 51 chr11 130899676 130899728 -17883744 - MIR SINE MIR -140 122 74 243 109 78 0 chr11 130900567 130900631 -17882841 + T-rich Low_complexity Low_complexity 1 69 0 206 159 45 0 chr11 130902172 130902216 -17881256 + (CCCCAG)n Simple_repeat Simple_repeat 1 46 0 2373 89 0 3 chr11 130903607 130903920 -17879552 - AluSq SINE Alu 0 313 2 26 0 0 0 chr11 130907979 130908005 -17875467 + AT_rich Low_complexity Low_complexity 1 26 0 1643 133 34 48 chr11 130908009 130908303 -17875169 + AluJb SINE Alu 1 290 -22 2066 95 3 30 chr11 130908317 130908622 -17874850 + AluSg SINE Alu 1 297 -13 2253 85 10 3 chr11 130908624 130908930 -17874542 + AluSx SINE Alu 5 312 0 3055 93 25 37 chr11 130908930 130909232 -17874240 + L1MA4 LINE L1 5823 6118 -182 2128 113 3 7 chr11 130909232 130909542 -17873930 - AluSg SINE Alu -1 309 1 3055 93 25 37 chr11 130909542 130909721 -17873751 + L1MA4 LINE L1 6118 6298 -2 1558 143 16 78 chr11 130910362 130910711 -17872761 - AluJb SINE Alu 0 312 1 213 39 0 0 chr11 130911124 130911150 -17872322 + (T)n Simple_repeat Simple_repeat 1 26 0 1712 129 4 8 chr11 130911250 130911513 -17871959 - AluSq SINE Alu -12 301 40 213 277 0 0 chr11 130912155 130912202 -17871270 + (TGG)n Simple_repeat Simple_repeat 2 48 0 246 261 287 5 chr11 130912202 130912397 -17871075 - MIR SINE MIR -10 252 3 209 228 70 0 chr11 130918118 130918175 -17865297 - L2 LINE L2 -2 3311 3251 2505 46 7 0 chr11 130919487 130919794 -17863678 - AluY SINE Alu -2 309 1 208 253 153 68 chr11 130919835 130919997 -17863475 + MIR SINE MIR 21 197 -11 228 242 158 11 chr11 130920255 130920350 -17863122 + LTR19A LTR ERV1 375 483 -3 2160 91 0 16 chr11 130920468 130920775 -17862697 + AluSx SINE Alu 1 302 -10 4007 35 28 0 chr11 130920799 130921451 -17862021 + L1P2 LINE L1 4844 5506 -648 27 0 0 0 chr11 130921551 130921578 -17861894 + GC_rich Low_complexity Low_complexity 1 27 0 290 188 0 0 chr11 130921607 130921671 -17861801 + L1 LINE L1 3510 3573 -2573 1862 157 3 3 chr11 130921675 130921975 -17861497 + AluSx SINE Alu 1 300 -12 1982 112 7 3 chr11 130921986 130922280 -17861192 + AluSq SINE Alu 1 295 -18 688 132 188 28 chr11 130922281 130922402 -17861070 + AluSg SINE Alu 1 150 -160 2208 88 3 3 chr11 130922402 130922699 -17860773 + AluY SINE Alu 1 297 -14 688 132 188 28 chr11 130922699 130922721 -17860751 + AluSg SINE Alu 150 167 -143 290 133 0 0 chr11 130922755 130922800 -17860672 + LTR38 LTR ERV1 165 209 -347 445 86 43 0 chr11 130922801 130922871 -17860601 + LTR5 LTR ERVK 1 73 -896 911 86 0 0 chr11 130922871 130922987 -17860485 + SVA Other Other 1053 1168 -218 5190 95 6 3 chr11 130922987 130923690 -17859782 + LTR5 LTR ERVK 265 969 0 1435 199 18 14 chr11 130923690 130923971 -17859501 + LTR38 LTR ERV1 205 486 -70 1224 140 102 140 chr11 130923975 130924110 -17859362 + AluSq SINE Alu 1 140 -163 2298 91 3 0 chr11 130924110 130924463 -17859009 + AluSx SINE Alu 1 312 0 1224 140 102 140 chr11 130924463 130924642 -17858830 + AluSq SINE Alu 140 303 0 2240 93 10 0 chr11 130924826 130925127 -17858345 - AluSq SINE Alu -8 305 2 2275 109 3 0 chr11 130925152 130925464 -17858008 - AluSq SINE Alu 0 313 1 2114 137 0 0 chr11 130925464 130925771 -17857701 - AluSx SINE Alu -5 307 1 787 224 26 0 chr11 130925861 130926052 -17857420 - AluJb SINE Alu 0 318 124 937 187 0 35 chr11 130926097 130926268 -17857204 - FRAM SINE Alu 0 166 2 1117 117 0 18 chr11 130926284 130926455 -17857017 - AluSg/x SINE Alu -11 301 134 2108 101 7 3 chr11 130926455 130926753 -17856719 - AluSg SINE Alu -11 299 1 21 0 0 0 chr11 130926762 130926783 -17856689 + AT_rich Low_complexity Low_complexity 1 21 0 1469 166 10 53 chr11 130926783 130926941 -17856531 - AluJo SINE Alu -20 292 152 2231 103 0 0 chr11 130926941 130927253 -17856219 - AluSx SINE Alu 0 312 1 1469 166 10 53 chr11 130927253 130927396 -17856076 - AluJo SINE Alu -160 152 4 1435 190 55 0 chr11 130927445 130927719 -17855753 - AluJo SINE Alu -23 289 1 364 348 34 39 chr11 130927730 130927963 -17855509 - L1M4 LINE L1 -1453 4693 4462 2317 103 0 0 chr11 130927999 130928309 -17855163 - AluSg SINE Alu 0 310 1 737 189 0 8 chr11 130928423 130928540 -17854932 + AluSq/x SINE Alu 3 120 -192 2423 62 10 0 chr11 130928540 130928847 -17854625 + AluY SINE Alu 2 311 0 737 189 0 8 chr11 130928847 130928861 -17854611 + AluSq/x SINE Alu 120 133 -179 789 126 0 0 chr11 130928863 130928974 -17854498 + AluSq SINE Alu 104 214 -99 616 164 148 8 chr11 130928968 130929125 -17854347 + AluJo/FRAM SINE Alu 146 319 0 * 2190 92 0 0 chr11 130929128 130929437 -17854035 + AluSx SINE Alu 1 309 0 765 175 0 28 chr11 130929444 130929587 -17853885 + AluSq/x SINE Alu 3 141 -172 2178 109 0 0 chr11 130929590 130929883 -17853589 + AluSx SINE Alu 1 293 -19 2018 118 7 7 chr11 130929890 130930186 -17853286 + AluSp SINE Alu 2 297 -16 201 39 0 0 chr11 130930203 130930229 -17853243 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 207 267 0 0 chr11 130930338 130930383 -17853089 + L2 LINE L2 3266 3310 -3 825 211 20 0 chr11 130930432 130930584 -17852888 - AluJb SINE Alu -24 288 134 242 313 119 15 chr11 130930936 130931070 -17852402 + L2 LINE L2 2935 3082 -231 496 301 64 32 chr11 130933512 130933731 -17849741 + L2 LINE L2 2150 2375 -939 635 221 8 0 chr11 130933742 130933869 -17849603 - FLAM_A SINE Alu -11 131 4 2338 72 0 7 chr11 130933875 130934179 -17849293 - AluSx SINE Alu -10 302 1 2208 98 0 13 chr11 130934188 130934493 -17848979 - AluSq SINE Alu -12 301 1 544 299 192 12 chr11 130934526 130934860 -17848612 - L3 LINE CR1 -616 961 568 606 259 118 35 chr11 130934991 130935219 -17848253 + MIR SINE MIR 4 250 -12 1874 116 22 0 chr11 130935289 130935557 -17847915 - AluSx SINE Alu -38 274 1 200 353 45 45 chr11 130935657 130935858 -17847614 - L2 LINE L2 -723 2591 2391 248 321 85 0 chr11 130937057 130937163 -17846309 - MIR SINE MIR -25 237 123 434 305 141 58 chr11 130938497 130939087 -17844385 + L2 LINE L2 1891 2529 -785 714 196 0 29 chr11 130939088 130939226 -17844246 + FLAM_C SINE Alu 2 135 -8 1837 123 0 18 chr11 130939227 130939504 -17843968 + AluSg SINE Alu 1 272 -38 3751 24 7 0 chr11 130939604 130940028 -17843444 + SVA Other Other 960 1386 0 2231 82 0 0 chr11 130940308 130940599 -17842873 - AluSq SINE Alu -20 293 3 193 73 73 49 chr11 130940903 130940944 -17842528 + MIR SINE MIR 111 152 -56 1233 157 43 5 chr11 130943353 130943563 -17839909 + MER20 DNA MER1_type 1 218 -1 367 67 0 0 chr11 130944519 130944564 -17838908 - MER4E LTR ERV1 -69 697 653 386 319 163 50 chr11 130944572 130945261 -17838211 + L2 LINE L2 2534 3313 0 833 50 0 0 chr11 130947505 130947606 -17835866 - AluS SINE Alu -212 101 1 2173 106 0 0 chr11 130947941 130948233 -17835239 - AluSg SINE Alu -18 292 1 602 203 7 0 chr11 130948305 130948461 -17835011 + AluJb SINE Alu 154 294 -18 1677 158 14 20 chr11 130948473 130948770 -17834702 + AluJb SINE Alu 9 303 -9 21 0 0 31 chr11 130948854 130948872 -17834600 + AT_rich Low_complexity Low_complexity 1 19 -12 2233 78 3 7 chr11 130948872 130949168 -17834304 + AluY SINE Alu 1 295 -16 21 0 0 31 chr11 130949168 130949181 -17834291 + AT_rich Low_complexity Low_complexity 19 31 0 523 153 24 0 chr11 130949209 130949294 -17834178 - AluJ/FLAM SINE Alu -224 88 2 860 120 0 23 chr11 130949624 130949757 -17833715 - FRAM SINE Alu -12 164 35 261 0 0 0 chr11 130949764 130949793 -17833679 + (T)n Simple_repeat Simple_repeat 1 29 0 751 180 33 44 chr11 130951211 130951394 -17832078 + MIR SINE MIR 11 191 -71 569 256 101 12 chr11 130951595 130951763 -17831709 + MIR3 SINE MIR 21 203 -5 2373 128 8 19 chr11 130951907 130952281 -17831191 - L1PB4 LINE L1 -4 6152 5783 270 101 0 91 chr11 130952384 130952452 -17831020 - L1PB4 LINE L1 -367 5789 5728 2363 86 0 0 chr11 130953267 130953558 -17829914 - AluSx SINE Alu -13 299 9 2092 136 23 0 chr11 130953600 130953902 -17829570 + AluSx SINE Alu 1 309 -3 733 152 0 0 chr11 130953902 130954014 -17829458 + AluJb SINE Alu 137 248 -64 185 212 0 0 chr11 130954111 130954144 -17829328 - L2 LINE L2 -17 3296 3264 865 128 21 28 chr11 130954239 130954380 -17829092 + FLAM_C SINE Alu 3 142 -1 403 287 75 23 chr11 130954433 130954607 -17828865 - MIR SINE MIR -77 185 3 1181 146 10 26 chr11 130954840 130955032 -17828440 - MER5A DNA MER1_type 0 189 1 2334 118 0 6 chr11 130955908 130956223 -17827249 + AluSq SINE Alu 1 313 0 2621 61 0 6 chr11 130956261 130956572 -17826900 + AluY SINE Alu 2 310 -1 44 71 0 24 chr11 130956842 130956968 -17826504 + AT_rich Low_complexity Low_complexity 1 123 0 1304 244 3 3 chr11 130956970 130957281 -17826191 + AluY SINE Alu 1 311 0 2325 156 69 14 chr11 130957579 130958015 -17825457 - MER21B LTR ERV1 -2 861 402 216 0 0 0 chr11 130958034 130958058 -17825414 + (T)n Simple_repeat Simple_repeat 1 24 0 23 0 0 0 chr11 130958076 130958099 -17825373 + GC_rich Low_complexity Low_complexity 1 23 0 1682 188 7 20 chr11 130958275 130958578 -17824894 - AluJo SINE Alu -2 310 12 2099 117 28 3 chr11 130958612 130958894 -17824578 - AluSx SINE Alu -23 289 1 2333 77 21 0 chr11 130961677 130961964 -17821508 + AluSc SINE Alu 1 293 -16 474 220 23 46 chr11 130962690 130962790 -17820682 + MER58C DNA MER1_type 32 128 -2292 2077 85 17 41 chr11 130962790 130963085 -17820387 + AluSx SINE Alu 1 288 -24 474 220 23 46 chr11 130963085 130963157 -17820315 + MER58C DNA MER1_type 128 200 -15 1291 174 62 18 chr11 130964908 130965183 -17818289 + AluJo SINE Alu 1 287 -15 2047 126 13 13 chr11 130965334 130965636 -17817836 - AluSx SINE Alu -10 302 1 1647 139 85 4 chr11 130965941 130966199 -17817273 - AluJb SINE Alu -33 279 1 2093 119 7 3 chr11 130966233 130966528 -17816944 + AluY SINE Alu 1 296 -15 589 108 216 0 chr11 130966624 130966735 -17816737 - L1MC1 LINE L1 -19 6314 6180 1153 184 61 4 chr11 130966744 130967005 -17816467 + L1MC1 LINE L1 6046 6321 -12 201 256 0 0 chr11 130967174 130967217 -17816255 + L2 LINE L2 3268 3310 -3 808 211 20 0 chr11 130967266 130967418 -17816054 - AluJb SINE Alu -24 288 134 234 313 119 15 chr11 130967770 130967904 -17815568 + L2 LINE L2 2935 3082 -231 687 310 94 95 chr11 130970344 130970574 -17812898 + L2 LINE L2 2150 2379 -935 1646 138 123 11 chr11 130970574 130970707 -17812765 - AluJb SINE Alu -14 298 181 2514 73 0 0 chr11 130970707 130971007 -17812465 - AluSg SINE Alu -10 300 1 1646 138 123 11 chr11 130971007 130971141 -17812331 - AluJb SINE Alu -131 181 1 687 310 94 95 chr11 130971141 130971152 -17812320 + L2 LINE L2 2379 2389 -925 2025 130 13 13 chr11 130971152 130971452 -17812020 - AluJb SINE Alu -10 302 3 687 310 94 95 chr11 130971452 130971565 -17811907 + L2 LINE L2 2389 2501 -813 2508 76 3 0 chr11 130971565 130971869 -17811603 - AluY SINE Alu -6 305 1 687 310 94 95 chr11 130971869 130972341 -17811131 + L2 LINE L2 2501 2977 -337 2137 109 7 3 chr11 130972341 130972652 -17810820 + AluSq SINE Alu 1 312 0 1843 143 52 0 chr11 130972733 130973019 -17810453 + AluJo SINE Alu 2 302 -10 183 286 32 32 chr11 130973094 130973157 -17810315 + L3 LINE CR1 1416 1478 -99 318 230 27 0 chr11 130973288 130973362 -17810110 + MIR SINE MIR 116 191 -71 673 212 0 0 chr11 130973455 130973627 -17809845 - FLAM_C SINE Alu 0 172 1 731 137 8 8 chr11 130976306 130976423 -17807049 - FLAM_C SINE Alu -25 118 2 394 237 7 72 chr11 130976428 130976567 -17806905 - FLAM_C SINE Alu -1 132 3 1829 126 7 24 chr11 130976590 130976884 -17806588 - AluSx SINE Alu -23 289 1 180 125 0 31 chr11 130977061 130977093 -17806379 + MIR SINE MIR 39 69 -139 198 0 0 0 chr11 130977123 130977145 -17806327 + (A)n Simple_repeat Simple_repeat 1 22 0 258 245 94 57 chr11 130977201 130977307 -17806165 + L2 LINE L2 3149 3258 -14 959 175 18 6 chr11 130977708 130977874 -17805598 - FRAM SINE Alu -16 160 1 2252 118 3 0 chr11 130977878 130978174 -17805298 - AluSx SINE Alu -15 297 1 1223 131 17 0 chr11 130978330 130978506 -17804966 - AluSg/x SINE Alu -21 291 113 1103 115 0 0 chr11 130979001 130979140 -17804332 - AluSq/x SINE Alu -174 139 1 2076 118 16 16 chr11 130979154 130979458 -17804014 - AluSp SINE Alu -3 310 7 947 155 27 0 chr11 130979784 130979932 -17803540 - AluJo SINE Alu -43 269 118 665 165 0 0 chr11 130979934 130980049 -17803423 - AluSq SINE Alu -10 303 189 270 93 47 0 chr11 130980049 130980092 -17803380 - AluSq SINE Alu -173 130 86 1132 198 0 31 chr11 130980092 130980178 -17803294 - AluJo SINE Alu -92 220 133 1780 180 3 3 chr11 130980178 130980473 -17802999 - AluYa5 SINE Alu -14 297 3 1132 198 0 31 chr11 130980473 130980613 -17802859 - AluJo SINE Alu -179 133 1 639 204 8 23 chr11 130980617 130980749 -17802723 - FLAM_C SINE Alu -1 132 3 2434 100 0 0 chr11 130980760 130981061 -17802411 - AluSx SINE Alu -11 301 1 258 245 94 57 chr11 130981374 130981480 -17801992 + L2 LINE L2 3149 3258 -14 304 273 146 0 chr11 130981853 130981963 -17801509 + MER5A DNA MER1_type 64 189 0 180 0 0 0 chr11 130982268 130982288 -17801184 + (TC)n Simple_repeat Simple_repeat 1 20 0 2189 112 7 0 chr11 130982290 130982577 -17800895 - AluSq SINE Alu -24 289 1 272 203 0 14 chr11 130982577 130982646 -17800826 + MLT1F LTR MaLR 475 542 0 1032 189 0 11 chr11 130982881 130983061 -17800411 + FRAM SINE Alu 1 176 0 300 330 139 17 chr11 130983070 130983358 -17800114 - L2 LINE L2 -1300 2014 1692 672 176 16 8 chr11 130983422 130983547 -17799925 - FLAM_A SINE Alu -10 132 7 723 170 41 119 chr11 130983952 130983990 -17799482 - MLT2D LTR ERVL 0 414 375 300 27 0 0 chr11 130983990 130984027 -17799445 + (TG)n Simple_repeat Simple_repeat 2 38 0 723 170 41 119 chr11 130984027 130984206 -17799266 - MLT2D LTR ERVL -39 375 214 2251 105 0 0 chr11 130984590 130984902 -17798570 + AluSq SINE Alu 1 312 0 1843 143 52 0 chr11 130984981 130985267 -17798205 + AluJo SINE Alu 2 302 -10 183 286 32 32 chr11 130985342 130985405 -17798067 + L3 LINE CR1 1416 1478 -99 318 230 27 0 chr11 130985536 130985610 -17797862 + MIR SINE MIR 116 191 -71 673 212 0 0 chr11 130985703 130985875 -17797597 - FLAM_C SINE Alu 0 172 1 2188 123 0 3 chr11 130988636 130988929 -17794543 - AluSx SINE Alu -20 292 1 268 333 39 47 chr11 130988963 130989092 -17794380 + L2 LINE L2 3129 3256 -16 2313 89 17 0 chr11 130989126 130989419 -17794053 + AluSx SINE Alu 1 298 -14 1277 111 56 59 chr11 130990007 130990313 -17793159 + SVA Other Other 7 311 -1075 311 302 62 54 chr11 130990317 130990754 -17792718 + L2 LINE L2 2593 3078 -194 207 0 0 0 chr11 130990772 130990795 -17792677 + (T)n Simple_repeat Simple_repeat 1 23 0 243 88 0 0 chr11 130990914 130990948 -17792524 + (A)n Simple_repeat Simple_repeat 1 34 0 277 356 17 35 chr11 130990952 130991067 -17792405 + L3 LINE CR1 945 1057 -520 489 221 88 142 chr11 130991094 130991122 -17792350 + L3 LINE CR1 1194 1222 -355 1891 108 8 0 chr11 130991122 130991373 -17792099 + AluSq SINE Alu 54 306 -7 489 221 88 142 chr11 130991373 130991635 -17791837 + L3 LINE CR1 1222 1464 -113 2168 105 20 7 chr11 130991635 130991940 -17791532 + AluSc SINE Alu 1 309 0 489 221 88 142 chr11 130991940 130992001 -17791471 + L3 LINE CR1 1464 1527 -50 1910 154 20 3 chr11 130992001 130992306 -17791166 + AluJb SINE Alu 1 310 -2 285 203 0 0 chr11 130992528 130992587 -17790885 - AluJ/monomer SINE Alu 0 308 250 651 37 0 0 chr11 130992697 130992778 -17790694 - AluY SINE Alu -229 82 2 596 210 0 8 chr11 130992792 130992911 -17790561 + MIR SINE MIR 90 207 -55 298 139 0 0 chr11 130992912 130992955 -17790517 + Alu SINE Alu 1 43 -258 2298 118 0 3 chr11 130993038 130993344 -17790128 - AluSx SINE Alu -3 309 5 242 234 16 31 chr11 130993351 130993415 -17790057 - MER5A DNA MER1_type -118 71 9 518 45 15 0 chr11 131043919 131043985 -17739487 - AluSq/x SINE Alu -181 132 66 866 282 43 17 chr11 131044505 131044806 -17738666 + MER93a LTR ERV1 93 401 -1 1134 199 9 0 chr11 131044806 131045022 -17738450 + MLT1E2 LTR MaLR 354 571 -55 842 138 7 62 chr11 131045022 131045167 -17738305 + FLAM_C SINE Alu 3 139 -4 232 157 39 0 chr11 131045171 131045222 -17738250 + MLT1F LTR MaLR 482 534 -8 611 344 59 22 chr11 131045226 131045549 -17737923 - L2 LINE L2 -2013 1301 967 187 333 94 19 chr11 131045549 131045762 -17737710 - L2 LINE L2 -2579 735 507 744 175 150 38 chr11 131045774 131046014 -17737458 + MLT1C LTR MaLR 47 313 -154 1712 157 34 0 chr11 131046014 131046282 -17737190 - AluJb SINE Alu -35 277 1 2542 63 0 3 chr11 131046288 131046587 -17736885 - AluSc SINE Alu -11 298 1 685 177 32 0 chr11 131048056 131048180 -17735292 + FLAM_A SINE Alu 1 128 -5 2339 105 3 0 chr11 131048296 131048601 -17734871 + AluSx SINE Alu 1 306 -6 581 293 59 12 chr11 131048604 131048857 -17734615 - L2 LINE L2 -832 2482 2218 483 211 0 21 chr11 131048907 131049002 -17734470 - MIR SINE MIR -25 237 145 2211 107 17 0 chr11 131049002 131049293 -17734179 - AluSx SINE Alu -16 296 1 536 199 77 85 chr11 131049293 131049439 -17734033 - HAL1 LINE L1 -224 2283 2138 2185 161 3 19 chr11 131049439 131049805 -17733667 - MLT1A1 LTR MaLR -3 362 3 536 199 77 85 chr11 131049805 131049904 -17733568 - HAL1 LINE L1 -369 2138 2040 23 0 0 0 chr11 131049935 131049958 -17733514 + AT_rich Low_complexity Low_complexity 1 23 0 242 179 15 45 chr11 131049958 131050025 -17733447 - L1MD3 LINE L1 -20 7975 7911 750 161 8 0 chr11 131050039 131050163 -17733309 - L1MD2 LINE L1 -69 6290 6166 624 317 105 30 chr11 131050163 131050609 -17732863 + L2 LINE L2 2512 3110 -203 856 176 0 0 chr11 131050609 131050740 -17732732 - FLAM_C SINE Alu -1 132 2 624 317 105 30 chr11 131050740 131050957 -17732515 + L2 LINE L2 3110 3309 -4 379 217 0 0 chr11 131051255 131051338 -17732134 - L1ME1 LINE L1 -5 6161 6079 351 189 0 27 chr11 131051370 131051444 -17732028 - L1MB2 LINE L1 0 6171 6100 911 109 0 31 chr11 131051444 131051572 -17731900 + AluJb SINE Alu 2 125 -187 1021 153 6 6 chr11 131051572 131051755 -17731717 - L1MB3 LINE L1 -59 6124 5942 284 136 86 49 chr11 131051762 131051843 -17731629 - L1MB2 LINE L1 0 6171 6088 1951 169 13 0 chr11 131051848 131052150 -17731322 - AluJo SINE Alu -6 306 1 667 264 43 19 chr11 131052227 131052435 -17731037 - MLT1J LTR MaLR -106 405 193 340 200 0 27 chr11 131052758 131052833 -17730639 + L2 LINE L2 3240 3312 -1 1795 164 0 19 chr11 131054834 131055144 -17728328 + AluJb SINE Alu 1 304 -8 388 229 38 9 chr11 131056823 131056928 -17726544 - MIR SINE MIR -65 143 36 210 91 0 0 chr11 131057441 131057474 -17725998 + (TGG)n Simple_repeat Simple_repeat 2 34 0 418 232 98 0 chr11 131059121 131059233 -17724239 - MIR SINE MIR -93 169 47 974 203 123 57 chr11 131059873 131060115 -17723357 + Charlie1b DNA MER1_type 4 273 -2488 2286 85 3 0 chr11 131060115 131060409 -17723063 - AluSp SINE Alu -18 295 1 974 203 123 57 chr11 131060409 131060482 -17722990 + Charlie1b DNA MER1_type 273 340 -183 735 157 0 0 chr11 131060482 131060590 -17722882 - FLAM_C SINE Alu -12 131 24 493 149 39 77 chr11 131060595 131060608 -17722864 + Charlie1b DNA MER1_type 318 330 -2431 2171 67 3 7 chr11 131060608 131060891 -17722581 + AluY SINE Alu 1 282 -29 493 149 39 77 chr11 131060891 131061058 -17722414 + Charlie1b DNA MER1_type 330 491 -32 2242 78 0 16 chr11 131061059 131061368 -17722104 + AluY SINE Alu 1 304 -7 2125 112 0 0 chr11 131061380 131061667 -17721805 + AluSx SINE Alu 1 287 -25 2258 64 0 3 chr11 131062486 131062802 -17720670 + AluSc SINE Alu 1 315 0 779 177 0 8 chr11 131062816 131062946 -17720526 + FLAM_A SINE Alu 5 133 0 619 189 8 8 chr11 131062952 131063074 -17720398 - L1MB5 LINE L1 -14 6160 6039 2120 108 7 0 chr11 131063479 131063774 -17719698 - AluSx SINE Alu -15 297 1 195 257 68 14 chr11 131064197 131064271 -17719201 - L2 LINE L2 -556 2758 2681 429 333 51 43 chr11 131064562 131064817 -17718655 - L2 LINE L2 -44 3228 2972 245 139 23 0 chr11 131065350 131065393 -17718079 + L1MC4 LINE L1 5783 5826 -1982 2073 122 26 0 chr11 131065395 131065699 -17717773 + AluSx SINE Alu 1 312 0 400 149 0 79 chr11 131065740 131065854 -17717618 + L1MC4 LINE L1 7015 7119 -923 1584 161 3 49 chr11 131065894 131066198 -17717274 + AluJb SINE Alu 1 290 -22 2144 180 39 86 chr11 131066255 131066423 -17717049 - Zaphod DNA AcHobo -5 4026 3852 2274 105 0 0 chr11 131066423 131066729 -17716743 + AluSx SINE Alu 1 306 -6 2144 180 39 86 chr11 131066729 131067055 -17716417 - Zaphod DNA AcHobo -179 3852 3512 1963 116 7 7 chr11 131067055 131067349 -17716123 - AluSx SINE Alu -18 294 1 1579 155 0 77 chr11 131067350 131067673 -17715799 - AluJb SINE Alu -14 298 1 2144 180 39 86 chr11 131067673 131067690 -17715782 - Zaphod DNA AcHobo -519 3512 3496 2042 91 3 24 chr11 131067690 131067986 -17715486 - AluSx SINE Alu -22 290 1 2144 180 39 86 chr11 131067986 131068166 -17715306 - Zaphod DNA AcHobo -535 3496 3364 1026 182 0 10 chr11 131068166 131068358 -17715114 - AluJo SINE Alu -5 307 118 692 128 68 17 chr11 131068400 131068517 -17714955 - AluSq/x SINE Alu -178 134 12 625 225 96 74 chr11 131068527 131068698 -17714774 - L1MC4a LINE L1 -1521 6287 6104 2262 96 0 3 chr11 131068698 131069001 -17714471 + AluSg SINE Alu 1 302 -8 625 225 96 74 chr11 131069001 131069153 -17714319 - L1MC4a LINE L1 -1704 6104 5957 * 5053 131 23 2 chr11 131069133 131069247 -17714225 + L1MC1 LINE L1 5170 5280 -1053 1645 150 9 75 chr11 131069247 131069375 -17714097 - 7SLRNA srpRNA srpRNA -1 319 184 1938 115 3 16 chr11 131069375 131069688 -17713784 - AluSc SINE Alu 0 309 1 1645 150 9 75 chr11 131069688 131069879 -17713593 - 7SLRNA srpRNA srpRNA -136 184 21 5053 131 23 2 chr11 131069879 131070776 -17712696 + L1MC1 LINE L1 5280 6179 -154 421 258 96 17 chr11 131070778 131070956 -17712516 - Zaphod DNA AcHobo -1077 2954 2763 564 168 18 36 chr11 131070984 131071151 -17712321 + CT-rich Low_complexity Low_complexity 1 164 0 1637 193 13 10 chr11 131071160 131071471 -17712001 - AluJb SINE Alu 0 312 1 1721 202 28 47 chr11 131071473 131071944 -17711528 - Zaphod DNA AcHobo -1272 2759 2298 328 206 147 10 chr11 131071930 131072032 -17711440 - Zaphod DNA AcHobo -3393 638 523 * 264 200 0 0 chr11 131072034 131072089 -17711383 + T-rich Low_complexity Low_complexity 1 55 0 2009 103 7 4 chr11 131072112 131072393 -17711079 + AluSx SINE Alu 7 288 -24 563 272 38 22 chr11 131072395 131072579 -17710893 - Zaphod DNA AcHobo -3799 232 46 303 288 24 16 chr11 131072588 131072713 -17710759 + L1MC4a LINE L1 6056 6181 -1627 336 321 64 43 chr11 131073379 131073519 -17709953 - L2 LINE L2 -955 2359 2217 1895 57 29 4 chr11 131074211 131074457 -17709015 + AluSg SINE Alu 1 252 -58 248 135 0 19 chr11 131075285 131075337 -17708135 + (CCCGA)n Simple_repeat Simple_repeat 3 53 0 270 178 67 31 chr11 131079248 131079320 -17704152 - MER91A DNA MER1_type -12 178 111 1695 182 0 0 chr11 131085853 131086144 -17697328 + AluJo SINE Alu 1 291 -21 1057 154 29 53 chr11 131086409 131086617 -17696855 + MER20 DNA MER1_type 1 203 -16 2126 79 7 14 chr11 131086621 131086911 -17696561 + AluSp SINE Alu 14 301 -12 2343 78 7 3 chr11 131087148 131087457 -17696015 - AluSp SINE Alu -3 310 1 345 265 53 15 chr11 131088426 131088558 -17694914 + MIR3 SINE MIR 66 202 -6 2267 89 3 3 chr11 131088698 131089002 -17694470 - AluSx SINE Alu -8 304 1 507 264 82 6 chr11 131089022 131089181 -17694291 - MIR3 SINE MIR -35 173 3 357 141 115 0 chr11 131089451 131089529 -17693943 + MIR SINE MIR 95 181 -81 1612 192 0 7 chr11 131089553 131089855 -17693617 + AluJb SINE Alu 1 300 -12 315 321 84 42 chr11 131089941 131090178 -17693294 - L1MC/D LINE L1 -1965 5843 5597 2181 96 10 10 chr11 131093975 131094276 -17689196 + AluY SINE Alu 1 301 -10 229 255 0 0 chr11 131094562 131094609 -17688863 + (TG)n Simple_repeat Simple_repeat 1 47 0 258 116 0 0 chr11 131094646 131094689 -17688783 + (TA)n Simple_repeat Simple_repeat 1 43 0 22 0 0 0 chr11 131095116 131095138 -17688334 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr11 131095360 131095383 -17688089 + AT_rich Low_complexity Low_complexity 1 23 0 2171 102 0 3 chr11 131098319 131098613 -17684859 + AluSg1 SINE Alu 1 293 -16 203 227 23 0 chr11 131099835 131099879 -17683593 + L2 LINE L2 3268 3312 -1 208 290 149 19 chr11 131104983 131105090 -17678382 - L2 LINE L2 0 3313 3193 1329 80 49 0 chr11 131105496 131105659 -17677813 + AluSx SINE Alu 3 173 -139 255 314 167 0 chr11 131106744 131106846 -17676626 - MIR SINE MIR -56 152 34 255 77 0 0 chr11 131107234 131107273 -17676199 - MADE1 DNA Mariner 0 80 42 257 316 114 5 chr11 131107300 131107493 -17675979 + L1MC4 LINE L1 7828 8041 -1 1500 164 12 31 chr11 131107544 131107800 -17675672 - AluJb SINE Alu -57 255 5 354 295 157 35 chr11 131107826 131108087 -17675385 + L1ME4a LINE L1 5479 5771 -2037 250 221 25 110 chr11 131108326 131108439 -17675033 + L1ME4a LINE L1 5961 6057 -64 2255 116 7 0 chr11 131108439 131108742 -17674730 - AluSc SINE Alu -4 305 1 250 221 25 110 chr11 131108742 131108791 -17674681 + L1ME4a LINE L1 6057 6109 -12 2123 115 14 0 chr11 131108815 131109103 -17674369 - AluSx SINE Alu -15 297 6 23 0 0 0 chr11 131109107 131109130 -17674342 + AT_rich Low_complexity Low_complexity 1 23 0 259 208 19 0 chr11 131109341 131109394 -17674078 + MSTD LTR MaLR 1 54 -342 809 195 13 0 chr11 131109408 131109562 -17673910 + MSTB2 LTR MaLR 300 455 -2 2284 107 0 10 chr11 131109851 131110149 -17673323 + AluSx SINE Alu 5 299 -13 239 226 0 0 chr11 131110219 131110272 -17673200 + Tigger5 DNA MER2_type 27 79 -2244 261 217 101 0 chr11 131110274 131110343 -17673129 - Tigger5 DNA MER2_type -6 2317 2242 * 390 150 0 0 chr11 131110339 131110399 -17673073 + Tigger5 DNA MER2_type 2264 2323 0 645 167 0 0 chr11 131110414 131110510 -17672962 + AluJo SINE Alu 90 185 -127 393 258 67 88 chr11 131110511 131110535 -17672937 + L1MDa LINE L1 1404 1427 -5113 2506 68 7 7 chr11 131110535 131110845 -17672627 + AluY SINE Alu 1 310 -1 393 258 67 88 chr11 131110845 131111060 -17672412 + L1MDa LINE L1 1427 1638 -4902 2026 145 14 3 chr11 131111102 131111391 -17672081 + AluSx SINE Alu 1 292 -20 1723 196 3 10 chr11 131111536 131111832 -17671640 - AluJb SINE Alu -18 294 1 1718 163 44 14 chr11 131111847 131112141 -17671331 - AluJb SINE Alu -9 303 1 392 236 12 91 chr11 131112141 131112277 -17671195 + L1M1 LINE L1 1494 1729 -4697 1964 102 25 35 chr11 131112277 131112595 -17670877 + AluSx SINE Alu 1 315 0 392 236 12 91 chr11 131112595 131112622 -17670850 + L1M1 LINE L1 1729 1757 -4669 1810 85 136 12 chr11 131112624 131112882 -17670590 - AluSc SINE Alu -19 290 1 1878 168 0 0 chr11 131112909 131113195 -17670277 + AluJb SINE Alu 1 286 -26 1617 190 3 29 chr11 131113204 131113515 -17669957 + AluJo SINE Alu 1 303 -9 603 114 0 88 chr11 131113577 131113691 -17669781 + U6 snRNA snRNA 1 104 -3 838 268 123 32 chr11 131113704 131114361 -17669111 + L1M1 LINE L1 2552 3268 -3158 277 160 0 0 chr11 131114363 131114413 -17669059 + MLT1A2 LTR MaLR 15 64 -310 694 230 52 35 chr11 131114472 131114646 -17668826 - MER8 DNA MER2_type -62 177 1 * 973 220 28 89 chr11 131114646 131114972 -17668500 + MLT1A2 LTR MaLR 69 374 0 322 276 71 16 chr11 131114994 131115121 -17668351 + L1M1 LINE L1 3397 3530 -2896 289 248 112 16 chr11 131115127 131115252 -17668220 + L1ME4a LINE L1 5951 6087 -34 447 282 187 41 chr11 131116080 131116449 -17667023 + L2 LINE L2 2808 3230 -83 2213 113 3 3 chr11 131116946 131117239 -17666233 - AluSq SINE Alu -20 293 1 2074 159 0 0 chr11 131117334 131117642 -17665830 - AluJb SINE Alu -4 308 1 1447 161 136 18 chr11 131118681 131118954 -17664518 + AluJo SINE Alu 1 305 -7 664 120 93 0 chr11 131119097 131119205 -17664267 + FLAM_C SINE Alu 6 123 -20 2670 55 0 0 chr11 131119318 131119626 -17663846 + AluY SINE Alu 1 308 -3 1876 138 7 28 chr11 131122035 131122344 -17661128 - AluJb SINE Alu 0 303 1 387 235 38 68 chr11 131122346 131122478 -17660994 - MIR SINE MIR -59 149 22 2261 185 77 4 chr11 131122596 131123066 -17660406 - LTR53 LTR ERVL 0 519 16 453 269 87 94 chr11 131123516 131123791 -17659681 - L2 LINE L2 -15 3257 2985 269 277 9 27 chr11 131123827 131123939 -17659533 + MLT1E LTR MaLR 29 138 -455 312 194 16 0 chr11 131124201 131124263 -17659209 + MLT1F1 LTR MaLR 2 64 -503 2433 63 0 10 chr11 131124263 131124564 -17658908 + AluY SINE Alu 1 298 -13 1081 224 161 52 chr11 131124608 131125236 -17658236 + HAL1 LINE L1 1517 2212 -295 332 278 150 75 chr11 131125246 131125473 -17657999 + HAL1 LINE L1 2241 2484 -23 1202 226 27 50 chr11 131126398 131126695 -17656777 - AluJo SINE Alu -11 291 2 677 178 25 25 chr11 131126724 131126842 -17656630 - FLAM_C SINE Alu -15 118 1 21 0 0 0 chr11 131126866 131126887 -17656585 + AT_rich Low_complexity Low_complexity 1 21 0 1091 221 20 29 chr11 131127003 131127247 -17656225 + MIR SINE MIR 19 260 -2 389 224 20 0 chr11 131128571 131128669 -17654803 - MER58C DNA MER1_type -4 211 112 324 0 0 0 chr11 131128788 131128824 -17654648 + (TG)n Simple_repeat Simple_repeat 1 36 0 1929 97 4 4 chr11 131128856 131129104 -17654368 - AluSq SINE Alu -65 248 1 2209 140 7 0 chr11 131130179 131130486 -17652986 - AluSx SINE Alu -3 309 1 2262 92 13 13 chr11 131130604 131130908 -17652564 - AluSq SINE Alu -9 304 1 23 0 0 0 chr11 131131962 131131985 -17651487 + AT_rich Low_complexity Low_complexity 1 23 0 1144 200 114 43 chr11 131132362 131132642 -17650830 + AluJb SINE Alu 1 300 -2 643 208 0 25 chr11 131132660 131132780 -17650692 - FLAM_C SINE Alu -25 118 2 1441 200 86 14 chr11 131132810 131133100 -17650372 + AluJo SINE Alu 1 311 -1 372 271 140 50 chr11 131133169 131133422 -17650050 + L1ME LINE L1 5176 5456 -706 289 308 37 2 chr11 131133455 131133653 -17649819 + L1ME LINE L1 5543 5671 -499 2235 100 3 3 chr11 131133653 131133943 -17649529 + AluY SINE Alu 1 290 -21 23 0 0 0 chr11 131134371 131134394 -17649078 + AT_rich Low_complexity Low_complexity 1 23 0 886 134 8 8 chr11 131135194 131135328 -17648144 + AluSq/x SINE Alu 1 134 -179 1691 109 168 0 chr11 131135328 131135584 -17647888 + AluSx SINE Alu 1 299 -13 191 172 0 0 chr11 131135696 131135725 -17647747 + MIR SINE MIR 219 247 -15 1494 140 95 0 chr11 131136091 131136334 -17647138 + AluJo SINE Alu 45 310 -2 255 328 41 13 chr11 131136344 131136470 -17647002 + MIR SINE MIR 35 148 -60 205 299 17 60 chr11 131136846 131136963 -17646509 + L2 LINE L2 2949 3060 -212 187 309 18 0 chr11 131137588 131137643 -17645829 - MER5A DNA MER1_type -132 57 2 2207 118 3 0 chr11 131138377 131138674 -17644798 - AluSx SINE Alu -14 298 1 2424 103 0 3 chr11 131140471 131140783 -17642689 - AluSx SINE Alu -1 311 1 23 33 0 0 chr11 131144267 131144297 -17639175 + GC_rich Low_complexity Low_complexity 1 30 0 644 342 51 26 chr11 131145833 131145943 -17637529 - MIR SINE MIR -6 256 150 2607 74 0 0 chr11 131145943 131146254 -17637218 - AluSx SINE Alu -1 311 1 644 342 51 26 chr11 131146254 131146377 -17637095 - MIR SINE MIR -112 150 17 2280 99 13 7 chr11 131149956 131150258 -17633214 + AluSx SINE Alu 1 304 -8 495 255 166 0 chr11 131150357 131150514 -17632958 - MIR SINE MIR -7 255 73 401 289 127 12 chr11 131151095 131151261 -17632211 - MER5A DNA MER1_type -4 185 1 238 206 27 0 chr11 131151832 131151905 -17631567 + (TCCA)n Simple_repeat Simple_repeat 2 76 0 248 247 146 0 chr11 131154050 131154139 -17629333 - MIR3 SINE MIR -6 202 101 423 308 151 6 chr11 131154499 131154658 -17628814 - MIR3 SINE MIR -16 192 11 640 218 6 73 chr11 131154856 131155048 -17628424 + MIR SINE MIR 51 228 -34 37 69 0 0 chr11 131157033 131157105 -17626367 + AT_rich Low_complexity Low_complexity 1 72 0 473 264 44 33 chr11 131157162 131157344 -17626128 - MIR SINE MIR -42 220 37 315 315 82 14 chr11 131159485 131159631 -17623841 - MIR3 SINE MIR -9 199 44 557 255 115 35 chr11 131159662 131159862 -17623610 + MIR SINE MIR 46 261 -1 2351 59 16 13 chr11 131159971 131160276 -17623196 - AluY SINE Alu -5 306 1 218 294 25 67 chr11 131162411 131162530 -17620942 + L2 LINE L2 1335 1448 -1866 1380 78 50 55 chr11 131162626 131162799 -17620673 - AluSq SINE Alu 0 313 140 2191 103 10 7 chr11 131162799 131163090 -17620382 - AluSx SINE Alu -20 292 1 1380 78 50 55 chr11 131163090 131163135 -17620337 - AluSq SINE Alu -173 140 96 3616 215 130 113 chr11 131163164 131163649 -17619823 - L2 LINE L2 -5 3308 2832 1431 118 85 0 chr11 131163649 131163861 -17619611 + MER30 DNA MER1_type 1 230 0 3616 215 130 113 chr11 131163861 131164126 -17619346 - L2 LINE L2 -481 2832 2573 822 144 0 0 chr11 131164126 131164251 -17619221 + AluSg/x SINE Alu 174 298 -12 3616 215 130 113 chr11 131164251 131165302 -17618170 - L2 LINE L2 -740 2573 1315 900 198 32 21 chr11 131165302 131165364 -17618108 - MER5A DNA MER1_type 0 189 129 1511 140 5 0 chr11 131165364 131165578 -17617894 + AluJo SINE Alu 86 300 -12 900 198 32 21 chr11 131165578 131165702 -17617770 - MER5A DNA MER1_type -60 129 1 3616 215 130 113 chr11 131165702 131165818 -17617654 - L2 LINE L2 -1998 1315 1202 371 331 148 23 chr11 131165852 131166284 -17617188 + L2 LINE L2 1620 2105 -1209 503 291 92 62 chr11 131166296 131166422 -17617050 + MIR SINE MIR 4 125 -137 806 188 0 0 chr11 131166422 131166555 -17616917 + FLAM_A SINE Alu 1 133 0 2419 55 14 3 chr11 131166559 131166850 -17616622 + AluY SINE Alu 1 294 -17 503 291 92 62 chr11 131166850 131166945 -17616527 + MIR SINE MIR 127 237 -25 581 293 59 12 chr11 131166995 131167248 -17616224 + L2 LINE L2 2218 2482 -832 2349 105 3 0 chr11 131167251 131167556 -17615916 - AluSx SINE Alu -6 306 1 711 176 24 0 chr11 131167672 131167797 -17615675 - FLAM_A SINE Alu -5 128 1 2507 63 0 7 chr11 131169266 131169566 -17613906 + AluSc SINE Alu 1 298 -11 1712 157 34 0 chr11 131169572 131169840 -17613632 + AluJb SINE Alu 1 277 -35 744 175 150 38 chr11 131169840 131170080 -17613392 - MLT1C LTR MaLR -154 313 47 187 333 94 19 chr11 131170092 131170305 -17613167 + L2 LINE L2 507 735 -2579 611 344 59 22 chr11 131170305 131170628 -17612844 + L2 LINE L2 967 1301 -2013 232 200 18 0 chr11 131170632 131170687 -17612785 - MLT1E2 LTR MaLR -8 616 561 842 138 7 62 chr11 131170687 131170832 -17612640 - FLAM_C SINE Alu -4 139 3 1134 199 9 0 chr11 131170832 131171048 -17612424 - MLT1E2 LTR MaLR -55 571 354 866 282 43 17 chr11 131171048 131171349 -17612123 - MER93a LTR ERV1 -1 401 93 557 45 0 0 chr11 131171868 131171935 -17611537 + AluSq/x SINE Alu 66 132 -181 5256 180 12 21 chr11 131172048 131172719 -17610753 - L1PB1 LINE L1 0 6151 5475 285 29 0 0 chr11 131172719 131172753 -17610719 + (TTA)n Simple_repeat Simple_repeat 2 35 0 2386 63 7 0 chr11 131172753 131173037 -17610435 - AluY SINE Alu -25 286 1 5256 180 12 21 chr11 131173037 131173611 -17609861 - L1PB1 LINE L1 -674 5477 4918 1953 170 0 0 chr11 131173650 131173939 -17609533 - AluJb SINE Alu -21 291 3 754 213 71 61 chr11 131174078 131174626 -17608846 - MER93a-int LTR ERV1 -203 4733 4110 3155 181 26 11 chr11 131174706 131175235 -17608237 - L1M1 LINE L1 -6928 637 96 189 0 0 0 chr11 131175235 131175256 -17608216 + (TG)n Simple_repeat Simple_repeat 2 22 0 3155 181 26 11 chr11 131175256 131175338 -17608134 - L1M1 LINE L1 -7469 96 17 273 234 68 73 chr11 131175349 131175545 -17607927 - MER31-int LTR ERV1 -2591 2345 2149 1749 176 16 22 chr11 131175545 131175857 -17607615 - AluSx SINE Alu -2 310 1 273 234 68 73 chr11 131175857 131175908 -17607564 - MER31-int LTR ERV1 -2787 2149 2099 1049 178 22 78 chr11 131175917 131176147 -17607325 - AluSg/x SINE Alu -7 305 89 1638 149 4 4 chr11 131176147 131176396 -17607076 - AluJb SINE Alu -3 309 61 1835 177 7 17 chr11 131176415 131176715 -17606757 - AluJb SINE Alu -15 297 1 2943 148 22 25 chr11 131176846 131177306 -17606166 - L1MA5 LINE L1 -2 6298 5839 1835 175 10 3 chr11 131177306 131177609 -17605863 - AluJb SINE Alu -5 307 3 2943 148 22 25 chr11 131177609 131177703 -17605769 - L1MA5 LINE L1 -461 5839 5746 14567 198 38 24 chr11 131177703 131178883 -17604589 + L1M2 LINE L1 1693 2855 -3993 1872 171 0 0 chr11 131178883 131179169 -17604303 + AluJo SINE Alu 1 286 -26 14567 198 38 24 chr11 131179169 131180044 -17603428 + L1M2 LINE L1 2855 3716 -3132 1708 181 17 17 chr11 131180044 131180343 -17603129 + AluJo SINE Alu 1 299 -13 14567 198 38 24 chr11 131180343 131182568 -17600904 + L1M2 LINE L1 3716 6062 -786 198 0 0 0 chr11 131183467 131183489 -17599983 + (T)n Simple_repeat Simple_repeat 1 22 0 193 289 96 0 chr11 131183696 131183748 -17599724 + L2 LINE L2 3172 3228 -44 208 283 0 0 chr11 131184283 131184329 -17599143 + polypyrimidine Low_complexity Low_complexity 3 48 0 2208 106 13 10 chr11 131185406 131185708 -17597764 - AluSq SINE Alu -10 303 1 1974 140 3 10 chr11 131185770 131186063 -17597409 - AluJb SINE Alu -20 292 2 5765 105 11 29 chr11 131186112 131186711 -17596761 + L1MA5A LINE L1 5352 5960 -337 2404 41 4 0 chr11 131186711 131186980 -17596492 + AluY SINE Alu 35 304 -7 5765 105 11 29 chr11 131186980 131187122 -17596350 + L1MA5A LINE L1 5960 6103 -194 2166 128 18 35 chr11 131187122 131187465 -17596007 - MER1B DNA MER1_type 0 337 1 5765 105 11 29 chr11 131187465 131187666 -17595806 + L1MA5A LINE L1 6103 6278 -19 831 169 12 25 chr11 131187671 131187831 -17595641 - AluJo SINE Alu -18 294 137 32 57 0 0 chr11 131187834 131187887 -17595585 + AT_rich Low_complexity Low_complexity 1 53 0 2226 127 3 0 chr11 131188084 131188383 -17595089 - AluJb SINE Alu -12 300 1 350 214 3 23 chr11 131188885 131189035 -17594437 - MLT1E2 LTR MaLR -417 209 97 537 280 198 36 chr11 131189091 131189308 -17594164 + L2 LINE L2 1295 1476 -1838 847 153 0 15 chr11 131189308 131189439 -17594033 - AluJo SINE Alu -169 133 5 537 280 198 36 chr11 131189439 131189742 -17593730 + L2 LINE L2 1476 1899 -1415 1157 213 104 85 chr11 131189745 131190272 -17593200 - MLT1F LTR MaLR -5 537 1 1065 266 126 53 chr11 131190284 131190833 -17592639 + L2 LINE L2 1935 2523 -791 578 179 55 166 chr11 131190881 131191048 -17592424 - HAL1 LINE L1 0 2507 2323 218 79 0 26 chr11 131191048 131191086 -17592386 + (TA)n Simple_repeat Simple_repeat 1 37 0 578 179 55 166 chr11 131191086 131191180 -17592292 - HAL1 LINE L1 -184 2323 2220 2272 113 7 0 chr11 131191180 131191481 -17591991 - AluSq SINE Alu -10 303 1 578 179 55 166 chr11 131191481 131191627 -17591845 - HAL1 LINE L1 -287 2220 2159 2185 161 3 19 chr11 131191627 131191993 -17591479 - MLT1A1 LTR MaLR -3 362 3 578 179 55 166 chr11 131191993 131192070 -17591402 - HAL1 LINE L1 -348 2159 2075 23 0 0 0 chr11 131192123 131192146 -17591326 + AT_rich Low_complexity Low_complexity 1 23 0 242 179 15 45 chr11 131192146 131192213 -17591259 - L1MD3 LINE L1 -20 7975 7911 750 161 8 0 chr11 131192227 131192351 -17591121 - L1MD2 LINE L1 -69 6290 6166 624 317 103 30 chr11 131192351 131192798 -17590674 + L2 LINE L2 2512 3109 -204 856 176 0 0 chr11 131192798 131192929 -17590543 - FLAM_C SINE Alu -1 132 2 624 317 103 30 chr11 131192929 131193146 -17590326 + L2 LINE L2 3109 3309 -4 379 217 0 0 chr11 131193445 131193528 -17589944 - L1ME1 LINE L1 -5 6161 6079 367 176 0 27 chr11 131193560 131193634 -17589838 - L1MB2 LINE L1 0 6171 6100 911 109 0 31 chr11 131193634 131193762 -17589710 + AluJb SINE Alu 2 125 -187 1014 160 6 6 chr11 131193762 131193957 -17589515 - L1MB3 LINE L1 -59 6124 5930 284 136 86 49 chr11 131193954 131194035 -17589437 - L1MB2 LINE L1 0 6171 6088 * 1957 166 13 0 chr11 131194040 131194341 -17589131 - AluJo SINE Alu -7 305 1 1294 268 38 15 chr11 131194418 131194814 -17588658 - MLT1J LTR MaLR -106 405 1 207 290 234 0 chr11 131194859 131194966 -17588506 + L2 LINE L2 3141 3272 0 640 234 0 8 chr11 131195002 131195130 -17588342 - FLAM_A SINE Alu -2 131 5 2107 98 10 55 chr11 131195142 131195449 -17588023 - AluSx SINE Alu -15 297 5 224 350 154 0 chr11 131195473 131195693 -17587779 - L3 LINE CR1 -13 1564 1311 2108 99 64 0 chr11 131196507 131196790 -17586682 - AluSx SINE Alu -7 305 5 183 227 23 23 chr11 131200703 131200747 -17582725 + MER5A DNA MER1_type 111 154 -35 203 195 117 26 chr11 131201207 131201284 -17582188 + MIR SINE MIR 71 154 -108 634 188 11 83 chr11 131201325 131201506 -17581966 - L1MB2 LINE L1 -4 6167 6000 223 226 17 157 chr11 131201506 131201621 -17581851 + L2 LINE L2 3215 3313 0 1920 138 3 28 chr11 131205636 131205946 -17577526 - AluJb SINE Alu 0 303 1 387 235 38 68 chr11 131205948 131206080 -17577392 - MIR SINE MIR -59 149 22 2261 185 77 4 chr11 131206198 131206668 -17576804 - LTR53 LTR ERVL 0 519 16 453 269 87 94 chr11 131207118 131207393 -17576079 - L2 LINE L2 -15 3257 2985 293 277 9 27 chr11 131207429 131207541 -17575931 + MLT1E LTR MaLR 29 138 -455 950 232 38 65 chr11 131207803 131207865 -17575607 + MLT1G LTR MaLR 2 64 -526 2371 63 0 3 chr11 131207865 131208164 -17575308 + AluY SINE Alu 1 298 -13 950 232 38 65 chr11 131208164 131208364 -17575108 + MLT1G LTR MaLR 64 257 -333 1638 142 59 31 chr11 131208824 131209112 -17574360 + AluJb SINE Alu 2 297 -15 277 364 39 0 chr11 131209175 131209304 -17574168 + MLT1-int LTR MaLR 766 899 -472 528 270 92 63 chr11 131209468 131209816 -17573656 + MLT1-int LTR MaLR 1014 1371 0 369 252 225 8 chr11 131210066 131210243 -17573229 + MLT1H LTR MaLR 341 545 -4 2039 134 0 13 chr11 131210518 131210832 -17572640 + AluSx SINE Alu 1 310 -2 338 279 39 19 chr11 131210977 131211081 -17572391 + L2 LINE L2 3204 3309 -4 233 284 261 23 chr11 131211219 131211876 -17571596 - L2 LINE L2 -655 2659 1809 2032 188 118 4 chr11 131211876 131212377 -17571095 - MER74A LTR ERVL 0 558 1 233 284 261 23 chr11 131212377 131212450 -17571022 - L2 LINE L2 -1505 1809 1755 230 289 0 0 chr11 131213351 131213403 -17570069 + (CGTG)n Simple_repeat Simple_repeat 1 52 0 465 303 25 46 chr11 131213542 131213780 -17569692 + L2 LINE L2 2432 2664 -650 796 287 31 11 chr11 131214036 131214322 -17569150 - L1MC4a LINE L1 -1884 5924 5633 387 0 0 0 chr11 131214332 131214375 -17569097 + (TTA)n Simple_repeat Simple_repeat 1 43 0 1503 168 11 8 chr11 131214380 131214648 -17568824 - AluJo SINE Alu -43 269 1 27 49 0 0 chr11 131214656 131214697 -17568775 + AT_rich Low_complexity Low_complexity 1 41 0 359 275 227 32 chr11 131214721 131214968 -17568504 + L2 LINE L2 2235 2529 -785 442 269 131 19 chr11 131215142 131215302 -17568170 - MIR SINE MIR -21 241 64 285 321 209 19 chr11 131215331 131215599 -17567873 + L2 LINE L2 2622 2940 -374 1021 157 43 22 chr11 131215670 131215855 -17567617 + MER20 DNA MER1_type 31 219 0 230 267 17 17 chr11 131215902 131215962 -17567510 + L2 LINE L2 3010 3069 -244 1752 159 0 0 chr11 131216158 131216428 -17567044 + Tigger3(Golem) DNA MER2_type 2768 3037 0 250 224 0 0 chr11 131217074 131217132 -17566340 - MER96B DNA MER1_type? -1 416 359 1455 175 58 117 chr11 131217132 131217375 -17566097 - MLT1A2 LTR MaLR 0 374 161 5129 58 18 21 chr11 131217375 131217857 -17565615 - L1PA8 LINE L1 -1 6171 5690 2213 92 3 0 chr11 131217857 131218152 -17565320 - AluSp SINE Alu -17 296 1 5129 58 18 21 chr11 131218152 131218337 -17565135 - L1PA8 LINE L1 -482 5690 5506 1455 175 58 117 chr11 131218337 131218487 -17564985 - MLT1A2 LTR MaLR -213 161 4 278 209 146 9 chr11 131218494 131218565 -17564907 + MER96B DNA MER1_type? 55 115 -302 1893 138 0 23 chr11 131218565 131218870 -17564602 - AluSx SINE Alu -9 303 6 278 209 146 9 chr11 131218870 131218908 -17564564 + MER96B DNA MER1_type? 115 179 -238 411 276 35 44 chr11 131219032 131219235 -17564237 - L1ME3A LINE L1 -7 6163 5963 622 127 143 0 chr11 131219243 131219369 -17564103 - L1MB5 LINE L1 0 6174 6031 25 0 0 0 chr11 131219369 131219394 -17564078 + AT_rich Low_complexity Low_complexity 1 25 0 3253 153 8 150 chr11 131219419 131219435 -17564037 - L1MB4 LINE L1 -122 6058 6041 2092 117 0 0 chr11 131219435 131219726 -17563746 - AluSx SINE Alu -21 291 1 3253 153 8 150 chr11 131219726 131220138 -17563334 - L1MB4 LINE L1 -139 6041 5572 2103 121 3 10 chr11 131220138 131220451 -17563021 + AluSx SINE Alu 1 311 -1 3253 153 8 150 chr11 131220451 131220652 -17562820 - L1MB4 LINE L1 -608 5572 5588 2179 80 13 0 chr11 131220652 131220953 -17562519 - AluY SINE Alu -6 305 1 3253 153 8 150 chr11 131220953 131221292 -17562180 - L1MB4 LINE L1 -591 5589 5203 1643 184 7 91 chr11 131221293 131221540 -17561932 - MLT1A2 LTR MaLR 0 374 173 2322 135 23 61 chr11 131221540 131221604 -17561868 - MSTB LTR MaLR 0 426 361 1926 103 4 0 chr11 131221604 131221865 -17561607 + AluSx SINE Alu 1 262 -50 2322 135 23 61 chr11 131221865 131222243 -17561229 - MSTB LTR MaLR -65 361 1 1643 184 7 91 chr11 131222243 131222403 -17561069 - MLT1A2 LTR MaLR -201 173 1 6047 101 39 17 chr11 131222451 131223393 -17560079 - L1MA3 LINE L1 -5 6300 5338 1830 217 38 34 chr11 131223385 131223871 -17559601 - L1MB4 LINE L1 -946 5200 4715 * 435 241 17 0 chr11 131223871 131223987 -17559485 - L1ME3A LINE L1 -195 5975 4670 1784 209 19 12 chr11 131224292 131224704 -17558768 - L1MC4 LINE L1 -478 7564 7150 3289 144 8 2 chr11 131225914 131226447 -17557025 + L1MC1 LINE L1 5785 6320 -13 536 222 93 19 chr11 131227025 131227187 -17556285 - MIR SINE MIR -58 204 31 1634 153 0 117 chr11 131228824 131229157 -17554315 + AluJb SINE Alu 2 295 -7 22 0 0 0 chr11 131229190 131229212 -17554260 + AT_rich Low_complexity Low_complexity 1 22 0 1591 187 24 3 chr11 131229217 131229506 -17553966 - AluJo SINE Alu -16 296 2 2003 122 79 48 chr11 131229638 131230016 -17553456 + MLT1B LTR MaLR 1 390 0 1297 281 62 27 chr11 131230016 131230500 -17552972 - MLT1J LTR MaLR -7 504 4 2046 95 37 0 chr11 131231284 131231578 -17551894 - AluSx SINE Alu -7 305 1 189 296 37 0 chr11 131231780 131231834 -17551638 - L2 LINE L2 -561 2753 2698 855 159 0 0 chr11 131232169 131232301 -17551171 + FLAM_C SINE Alu 1 132 -1 407 216 0 34 chr11 131232607 131232695 -17550777 + L2 LINE L2 3187 3271 -1 435 206 103 43 chr11 131232891 131233075 -17550397 - MER112 DNA MER1_type -52 208 14 201 74 0 0 chr11 131233932 131233959 -17549513 + (CCAA)n Simple_repeat Simple_repeat 2 28 0 295 310 107 11 chr11 131234301 131234488 -17548984 + L1MEd LINE L1 612 816 -5303 1773 157 4 0 chr11 131234510 131234791 -17548681 + MER7A DNA MER2_type 66 345 -1 1407 281 115 40 chr11 131234806 131235170 -17548302 + L1M4 LINE L1 2853 3188 -2958 2038 131 7 0 chr11 131235170 131235475 -17547997 + AluSg SINE Alu 1 307 -3 1407 281 115 40 chr11 131235475 131235788 -17547684 + L1M4 LINE L1 3188 3476 -2670 5205 68 28 6 chr11 131235788 131236479 -17546993 - L1PA10 LINE L1 -11 6157 5452 1407 281 115 40 chr11 131236479 131237010 -17546462 + L1M4 LINE L1 3476 3965 -2181 369 0 0 0 chr11 131237010 131237051 -17546421 + (CA)n Simple_repeat Simple_repeat 1 41 0 1407 281 115 40 chr11 131237051 131237330 -17546142 + L1M4 LINE L1 3965 4455 -1691 732 249 69 29 chr11 131237329 131237574 -17545898 + L1ME1 LINE L1 5907 6161 -5 * 368 316 77 37 chr11 131237578 131237621 -17545851 + L1PA13 LINE L1 5648 5688 -475 1939 106 41 7 chr11 131237621 131237914 -17545558 + AluSp SINE Alu 1 303 -10 368 316 77 37 chr11 131237914 131238142 -17545330 + L1PA13 LINE L1 5688 5930 -233 * 2542 146 73 9 chr11 131237917 131238383 -17545089 + L1MB3 LINE L1 5688 6183 0 330 237 50 0 chr11 131238357 131238546 -17544926 + L1M4 LINE L1 5127 5331 -816 * 2361 54 7 3 chr11 131238546 131238842 -17544630 + AluY SINE Alu 13 309 -2 2648 129 30 2 chr11 131238857 131239260 -17544212 - LTR39 LTR ERV1 -369 414 1 324 286 20 10 chr11 131239264 131239362 -17544110 + MIR SINE MIR 150 248 -14 2114 126 26 43 chr11 131240826 131241175 -17542297 + MER2 DNA MER2_type 2 344 0 2107 111 0 3 chr11 131242083 131242381 -17541091 - AluSq SINE Alu -12 301 5 887 151 0 7 chr11 131242385 131242531 -17540941 - AluSg/x SINE Alu -11 299 155 17104 136 19 12 chr11 131242531 131242615 -17540857 - L1MA3 LINE L1 -477 7247 7165 2315 129 30 30 chr11 131242615 131242979 -17540493 + THE1B LTR MaLR 1 364 0 17104 136 19 12 chr11 131242979 131249000 -17534472 - L1MA3 LINE L1 -559 7165 1106 753 81 54 0 chr11 131249010 131249121 -17534351 - L1MA3 LINE L1 -7434 131 15 1697 180 0 19 chr11 131249130 131249441 -17534031 - AluJb SINE Alu -5 307 3 199 286 26 13 chr11 131249857 131249934 -17533538 - L2 LINE L2 -39 3274 3197 181 74 0 0 chr11 131250253 131250280 -17533192 - L2 LINE L2 -320 2952 2926 443 132 0 53 chr11 131251944 131252020 -17531452 + MLT1B LTR MaLR 6 77 -313 2373 141 52 10 chr11 131252020 131252424 -17531048 - Tigger2a DNA MER2_type 0 434 14 1375 185 35 18 chr11 131252434 131252720 -17530752 + MLT1B LTR MaLR 73 363 -27 336 230 97 35 chr11 131252720 131252833 -17530639 - MIR3 SINE MIR -25 183 64 215 211 0 0 chr11 131253015 131253053 -17530419 + (CGTG)n Simple_repeat Simple_repeat 4 41 0 1522 164 4 15 chr11 131253160 131253423 -17530049 + AluJb SINE Alu 10 269 -43 282 354 134 0 chr11 131253724 131253888 -17529584 - L2 LINE L2 -1020 2294 2109 274 225 238 0 chr11 131253905 131253985 -17529487 + MIR SINE MIR 106 204 -58 1605 201 34 3 chr11 131254008 131254306 -17529166 - MER7A DNA MER2_type 0 346 42 207 244 378 0 chr11 131254421 131254511 -17528961 - L3 LINE CR1 -561 1016 893 229 159 175 0 chr11 131255431 131255494 -17527978 + MLT1H LTR MaLR 373 446 -103 895 220 5 21 chr11 131255683 131255874 -17527598 - MER3 DNA MER1_type -19 190 3 866 193 11 8 chr11 131256003 131256473 -17526999 + (TGGA)n Simple_repeat Simple_repeat 1 471 0 264 242 88 0 chr11 131257224 131257315 -17526157 - L2 LINE L2 -5 3267 3169 357 282 91 91 chr11 131257434 131257654 -17525818 + MIR SINE MIR 29 248 -14 212 0 36 0 chr11 131257998 131258026 -17525446 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 880 179 0 0 chr11 131258028 131258173 -17525299 - FRAM SINE Alu -31 145 1 762 287 54 68 chr11 131258330 131258808 -17524664 - L1MC4a LINE L1 -108 6013 5542 669 289 93 0 chr11 131258964 131259210 -17524262 + L2 LINE L2 1235 1503 -1811 3341 183 70 21 chr11 131259244 131259955 -17523517 - L1MB7 LINE L1 0 6184 5439 2547 274 157 12 chr11 131259975 131261505 -17521967 + L2 LINE L2 1573 3311 -2 291 287 139 0 chr11 131262052 131262167 -17521305 + MIR SINE MIR 59 189 -73 222 378 15 22 chr11 131262308 131262443 -17521029 - L2 LINE L2 -1 3271 3138 269 277 6 5 chr11 131264724 131264910 -17518562 + (TG)n Simple_repeat Simple_repeat 1 186 0 211 298 24 0 chr11 131265223 131265307 -17518165 + L2 LINE L2 2467 2552 -762 454 282 70 33 chr11 131265591 131265804 -17517668 + L2 LINE L2 3077 3297 -16 231 114 0 0 chr11 131265812 131265847 -17517625 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 314 244 17 84 chr11 131265954 131266073 -17517399 - L2 LINE L2 -1 3312 3202 552 288 38 0 chr11 131267429 131267589 -17515883 + MIR SINE MIR 73 238 -24 2238 130 35 22 chr11 131267791 131268161 -17515311 - THE1C LTR MaLR 0 375 1 416 327 43 0 chr11 131268254 131268416 -17515056 + MIR SINE MIR 80 248 -14 180 294 147 29 chr11 131268425 131268527 -17514945 - MIR SINE MIR -40 222 109 230 243 14 14 chr11 131269906 131269980 -17513492 + (CCAA)n Simple_repeat Simple_repeat 1 74 0 361 303 0 0 chr11 131270014 131270136 -17513336 + (CCAA)n Simple_repeat Simple_repeat 3 124 0 431 143 11 44 chr11 131270149 131270240 -17513232 - LTR41 LTR ERVL -12 761 674 342 276 11 129 chr11 131270666 131270938 -17512534 - LTR41 LTR ERVL -70 703 464 623 279 0 16 chr11 131270977 131271160 -17512312 - LTR41 LTR ERVL -593 180 1 227 310 10 0 chr11 131271176 131271276 -17512196 + (CCAA)n Simple_repeat Simple_repeat 4 104 0 216 205 103 39 chr11 131271343 131271421 -17512051 - L2 LINE L2 -37 3276 3194 499 288 94 9 chr11 131273083 131273295 -17510177 + MIR SINE MIR 26 255 -7 188 331 11 15 chr11 131274888 131274983 -17508489 - MIR SINE MIR -85 123 28 212 315 153 9 chr11 131275833 131275944 -17507528 + MIR SINE MIR 20 146 -62 1166 168 22 0 chr11 131276310 131276495 -17506977 - MER5A DNA MER1_type 0 189 1 598 259 81 25 chr11 131277862 131278059 -17505413 + MIR SINE MIR 40 247 -15 245 254 0 42 chr11 131280059 131280130 -17503342 - MIR SINE MIR 0 262 195 866 180 12 41 chr11 131280131 131280303 -17503169 + AluJb SINE Alu 135 301 -11 192 320 62 39 chr11 131280331 131280365 -17503107 - MIR SINE MIR -119 143 111 2206 137 34 14 chr11 131280365 131280722 -17502750 + THE1B LTR MaLR 1 364 0 192 320 62 39 chr11 131280722 131280815 -17502657 - MIR SINE MIR -151 111 13 398 269 21 52 chr11 131280927 131281130 -17502342 + MIR SINE MIR 17 212 -50 1786 147 0 45 chr11 131281285 131281598 -17501874 + AluJo SINE Alu 6 304 -8 227 200 0 0 chr11 131281971 131282016 -17501456 + (CA)n Simple_repeat Simple_repeat 1 45 0 188 268 171 12 chr11 131282216 131282298 -17501174 - MIR SINE MIR -94 114 20 1550 215 24 77 chr11 131283287 131283432 -17500040 - MLT1H LTR MaLR -106 443 292 2434 158 63 0 chr11 131283432 131283830 -17499642 + MSTB LTR MaLR 4 426 0 1550 215 24 77 chr11 131283830 131284150 -17499322 - MLT1H LTR MaLR -257 292 3 319 273 0 23 chr11 131284324 131284412 -17499060 + MIR3 SINE MIR 78 163 -45 935 211 0 0 chr11 131284682 131284848 -17498624 + AluJb SINE Alu 85 250 -62 287 289 116 58 chr11 131285158 131285331 -17498141 - MIR SINE MIR -6 256 74 237 347 25 16 chr11 131285471 131285592 -17497880 + L3b LINE CR1 1293 1414 -169 589 162 0 60 chr11 131285615 131285732 -17497740 + FLAM_C SINE Alu 34 143 0 444 231 300 0 chr11 131285745 131285905 -17497567 - MIR SINE MIR -21 241 34 960 174 111 0 chr11 131286811 131286983 -17496489 - MER21B LTR ERV1 -364 499 309 374 40 27 40 chr11 131286985 131287060 -17496412 + (TTTA)n Simple_repeat Simple_repeat 3 76 0 8715 34 7 219 chr11 131287060 131288774 -17494698 - SVA Other Other -23 1363 14 369 0 0 0 chr11 131288828 131288869 -17494603 + (TG)n Simple_repeat Simple_repeat 1 41 0 1518 164 51 7 chr11 131288941 131289216 -17494256 + AluJo SINE Alu 1 287 -25 2035 173 25 6 chr11 131289350 131289708 -17493764 + MLT1A1 LTR MaLR 1 365 0 1145 311 31 47 chr11 131289711 131290265 -17493207 - LTR67 LTR ERVL -10 547 3 294 264 36 36 chr11 131290281 131290391 -17493081 + L2 LINE L2 3163 3272 0 330 234 115 78 chr11 131290711 131290903 -17492569 + MLT1L LTR MaLR 18 216 -399 381 93 0 0 chr11 131291059 131291113 -17492359 + (CA)n Simple_repeat Simple_repeat 2 55 0 360 318 57 57 chr11 131292362 131292695 -17490777 - L2 LINE L2 -20 3252 2920 261 278 31 41 chr11 131293335 131293432 -17490040 - MIR SINE MIR -74 188 93 291 268 12 24 chr11 131293886 131293968 -17489504 + MIR SINE MIR 52 132 -76 457 280 51 79 chr11 131294240 131294454 -17489018 + MIR SINE MIR 36 243 -19 192 278 19 0 chr11 131294801 131294855 -17488617 - L2 LINE L2 -5 3308 3254 310 311 52 15 chr11 131295052 131295187 -17488285 + MIR3 SINE MIR 63 202 -6 187 162 0 0 chr11 131295209 131295246 -17488226 - L3b LINE CR1 -217 1366 1330 2164 129 0 0 chr11 131295343 131295654 -17487818 - AluSx SINE Alu -1 311 1 257 368 86 19 chr11 131296750 131296959 -17486513 - MIR SINE MIR -6 256 34 696 326 82 3 chr11 131297070 131297374 -17486098 - MARNA DNA Mariner -15 571 244 2278 92 3 0 chr11 131297773 131298066 -17485406 - AluSp SINE Alu -19 294 1 442 271 70 35 chr11 131298525 131298724 -17484748 + MIR SINE MIR 36 250 -12 202 205 0 0 chr11 131298791 131298830 -17484642 + G-rich Low_complexity Low_complexity 3 41 0 360 0 0 0 chr11 131299089 131299129 -17484343 + (TG)n Simple_repeat Simple_repeat 1 40 0 237 336 22 22 chr11 131301387 131301521 -17481951 - MIR SINE MIR -44 218 85 2076 131 0 0 chr11 131302824 131303122 -17480350 - AluSx SINE Alu -14 298 1 366 61 0 0 chr11 131303753 131303802 -17479670 + (TG)n Simple_repeat Simple_repeat 2 50 0 650 264 33 6 chr11 131304923 131305105 -17478367 + L2 LINE L2 2256 2442 -872 1322 157 38 6 chr11 131305114 131305523 -17477949 - LTR54 LTR ERV1 -28 482 1 828 245 192 27 chr11 131305568 131306211 -17477261 + L2 LINE L2 2525 3276 -37 1860 116 18 4 chr11 131306311 131306587 -17476885 + AluSx SINE Alu 30 309 -3 349 246 158 31 chr11 131306694 131306969 -17476503 + LTR33 LTR ERVL 172 521 0 2257 82 7 0 chr11 131308372 131308665 -17474807 + AluSx SINE Alu 1 295 -17 1204 231 100 31 chr11 131309175 131309525 -17473947 + MLT1A2 LTR MaLR 1 374 0 985 192 0 22 chr11 131310372 131310554 -17472918 + AluJb SINE Alu 131 308 -4 417 301 106 59 chr11 131310904 131311140 -17472332 - L2 LINE L2 -73 3199 2953 419 247 93 33 chr11 131311908 131312058 -17471414 + MIR SINE MIR 14 172 -90 3515 139 13 0 chr11 131312869 131313393 -17470079 + LTR26B LTR ERV1 1 531 0 247 133 17 50 chr11 131314725 131314785 -17468687 + MLT1K LTR MaLR 510 567 -21 500 252 26 0 chr11 131315181 131315296 -17468176 + MIR SINE MIR 29 146 -62 192 336 19 39 chr11 131315533 131315637 -17467835 + L2 LINE L2 3181 3282 -31 405 239 69 23 chr11 131316481 131316611 -17466861 - MER91C DNA MER1_type 0 140 5 400 319 226 1 chr11 131316725 131316930 -17466542 + MIR SINE MIR 3 251 -11 189 0 0 0 chr11 131317064 131317085 -17466387 + (TA)n Simple_repeat Simple_repeat 2 22 0 2287 108 0 0 chr11 131317085 131317380 -17466092 - AluSg SINE Alu -15 295 1 2029 115 163 21 chr11 131318100 131318474 -17464998 - MSTA LTR MaLR 0 428 2 1725 181 15 0 chr11 131318484 131318754 -17464718 - AluJo SINE Alu -38 274 1 534 327 30 18 chr11 131318834 131319002 -17464470 + MIR SINE MIR 23 192 -70 1880 174 0 13 chr11 131320411 131320710 -17462762 - AluJo SINE Alu -17 295 1 2030 200 67 10 chr11 131320710 131321115 -17462357 + MSTB1 LTR MaLR 5 432 0 722 157 7 21 chr11 131321124 131321264 -17462208 + MLT1B LTR MaLR 1 138 -236 434 182 45 0 chr11 131321293 131321381 -17462091 + LOR1a LTR ERV1 79 170 -327 2032 152 17 0 chr11 131321386 131321688 -17461784 + AluJo SINE Alu 6 312 0 995 104 0 0 chr11 131321819 131321953 -17461519 - FLAM_C SINE Alu 0 143 10 1357 210 31 28 chr11 131322031 131322454 -17461018 - L1MEc LINE L1 -5327 1069 646 431 272 196 29 chr11 131322600 131322876 -17460596 - L1MEc LINE L1 -5963 433 112 2321 123 7 0 chr11 131322885 131323195 -17460277 - AluSx SINE Alu 0 312 1 291 54 0 0 chr11 131323392 131323429 -17460043 + (A)n Simple_repeat Simple_repeat 1 37 0 413 148 21 12 chr11 131323442 131323545 -17459927 + LOR1a LTR ERV1 167 308 -189 * 865 193 41 19 chr11 131323530 131323790 -17459682 + LOR1a LTR ERV1 182 488 -9 836 178 26 112 chr11 131323793 131324062 -17459410 + MLT1B LTR MaLR 120 386 0 210 215 83 0 chr11 131324502 131324623 -17458849 + (CAGCC)n Simple_repeat Simple_repeat 5 135 0 453 340 47 33 chr11 131325204 131325419 -17458053 + MIR SINE MIR 10 227 -35 503 280 30 116 chr11 131325522 131325851 -17457621 - L2 LINE L2 -171 3142 2842 199 275 25 50 chr11 131325860 131325940 -17457532 + L2 LINE L2 3189 3266 -6 1631 172 22 50 chr11 131326137 131326281 -17457191 + AluJb SINE Alu 1 148 -164 2105 129 7 0 chr11 131326281 131326575 -17456897 + AluSx SINE Alu 10 305 -7 1631 172 22 50 chr11 131326575 131326750 -17456722 + AluJb SINE Alu 148 311 -1 428 271 75 87 chr11 131326761 131327031 -17456441 + L1ME3A LINE L1 1446 1708 -4832 5423 154 47 12 chr11 131327032 131327502 -17455970 - L1MC1 LINE L1 -1 6332 5880 1797 143 44 0 chr11 131327502 131327775 -17455697 - AluSq SINE Alu -12 301 17 5423 154 47 12 chr11 131327775 131328434 -17455038 - L1MC1 LINE L1 -453 5880 5166 588 215 33 8 chr11 131328434 131328555 -17454917 - FLAM_A SINE Alu -8 134 11 2060 125 32 0 chr11 131328585 131328864 -17454608 - AluSx SINE Alu -24 288 1 2833 222 49 14 chr11 131328865 131329681 -17453791 - L1MC1 LINE L1 -979 5167 4323 273 261 0 0 chr11 131329825 131329890 -17453582 + MER52A LTR ERV1 1 65 -1690 7566 206 56 5 chr11 131330399 131331908 -17451564 + MER52A LTR ERV1 204 1755 0 811 193 27 0 chr11 131332006 131332156 -17451316 + FRAM SINE Alu 12 165 -11 2357 99 3 0 chr11 131332212 131332538 -17450934 + AluSp SINE Alu 1 313 0 369 298 85 49 chr11 131332654 131333368 -17450104 + L1ME3A LINE L1 3221 3960 -2580 303 169 0 0 chr11 131333375 131333434 -17450038 + L1MA10 LINE L1 6266 6324 -10 207 0 0 0 chr11 131333601 131333624 -17449848 + (T)n Simple_repeat Simple_repeat 1 23 0 2455 68 7 19 chr11 131333767 131334076 -17449396 - AluSq SINE Alu -8 305 1 845 249 71 38 chr11 131334162 131334527 -17448945 + L1ME3 LINE L1 5786 6162 0 694 291 29 84 chr11 131334543 131334618 -17448854 + L1ME3A LINE L1 4196 4274 -2266 861 264 28 5 chr11 131334618 131334834 -17448638 - MER58A DNA MER1_type 0 224 4 694 291 29 84 chr11 131334834 131335150 -17448322 + L1ME3A LINE L1 4274 4551 -1989 1854 159 0 24 chr11 131335150 131335440 -17448032 + AluJb SINE Alu 2 284 -28 694 291 29 84 chr11 131335440 131335594 -17447878 + L1ME3A LINE L1 4551 4712 -1828 758 194 0 15 chr11 131335651 131335785 -17447687 - FLAM_C SINE Alu 0 133 2 587 222 65 0 chr11 131335786 131335971 -17447501 - MER69 DNA AcHobo -6 2520 2324 1202 266 10 60 chr11 131335990 131336389 -17447083 - MER69 DNA AcHobo -2084 442 64 314 291 44 84 chr11 131336407 131337108 -17446364 + L1ME3A LINE L1 4781 5453 -1087 1898 156 6 19 chr11 131337115 131337430 -17446042 + AluJb SINE Alu 1 311 -1 338 288 103 49 chr11 131337619 131337666 -17445806 + L1ME3A LINE L1 5566 5609 -949 2112 106 0 40 chr11 131337666 131337967 -17445505 - AluSx SINE Alu -23 289 1 338 288 103 49 chr11 131337967 131338187 -17445285 + L1ME3A LINE L1 5609 5844 -714 1019 77 23 0 chr11 131338188 131338318 -17445154 + AluSp SINE Alu 1 133 -180 314 341 49 30 chr11 131338324 131338488 -17444984 + L1ME3A LINE L1 5831 5997 -2205 717 82 0 0 chr11 131338488 131338585 -17444887 + AluSg/x SINE Alu 205 301 -9 271 285 67 28 chr11 131338728 131338907 -17444565 + L1ME3A LINE L1 6155 6340 -224 1871 81 0 0 chr11 131339573 131339795 -17443677 + AluSq SINE Alu 1 222 -91 284 298 132 0 chr11 131339917 131340031 -17443441 + MIR SINE MIR 22 150 -112 395 283 67 95 chr11 131340422 131340828 -17442644 - L2 LINE L2 -6 3307 2915 4239 116 5 37 chr11 131340828 131341483 -17441989 + MER51A LTR ERV1 1 634 0 395 283 67 95 chr11 131341483 131341700 -17441772 - L2 LINE L2 -398 2915 2693 882 233 95 65 chr11 131341708 131341895 -17441577 + L1MC5 LINE L1 7367 7547 -414 2130 124 0 0 chr11 131341895 131342205 -17441267 - AluSx SINE Alu 0 310 1 882 233 95 65 chr11 131342205 131342522 -17440950 + L1MC5 LINE L1 7547 7887 -74 180 77 0 0 chr11 131342535 131342561 -17440911 + (A)n Simple_repeat Simple_repeat 1 26 0 332 285 123 45 chr11 131342812 131342933 -17440539 + MIR SINE MIR 34 175 -87 2378 125 22 8 chr11 131342933 131343292 -17440180 - THE1B LTR MaLR 0 364 1 332 285 123 45 chr11 131343292 131343349 -17440123 + MIR SINE MIR 175 226 -36 381 22 0 0 chr11 131343530 131343576 -17439896 + (CA)n Simple_repeat Simple_repeat 1 46 0 785 127 30 0 chr11 131344847 131344981 -17438491 + LTR49 LTR ERV1 26 163 -432 716 162 16 49 chr11 131344984 131345172 -17438300 + LTR29 LTR ERV1 448 653 0 356 220 0 9 chr11 131345589 131345698 -17437774 + CT-rich Low_complexity Low_complexity 1 108 0 189 0 0 0 chr11 131345700 131345721 -17437751 + (TCCCC)n Simple_repeat Simple_repeat 5 25 0 698 33 0 11 chr11 131345721 131345811 -17437661 + (TTTC)n Simple_repeat Simple_repeat 4 92 0 1534 166 0 4 chr11 131345832 131346061 -17437411 - AluJo SINE Alu -84 228 1 17763 165 16 7 chr11 131346061 131350362 -17433110 + L1PA13 LINE L1 1832 6156 -7 270 155 6 49 chr11 131350362 131350448 -17433024 - LTR49 LTR ERV1 -554 41 1 * 344 222 37 0 chr11 131350448 131350497 -17432975 - MLT1C LTR MaLR -410 57 6 359 240 71 107 chr11 131350532 131350728 -17432744 + MIR SINE MIR 2 190 -72 984 203 76 17 chr11 131350733 131351074 -17432398 + MSTD LTR MaLR 5 396 0 525 240 150 1 chr11 131351128 131351295 -17432177 + MIR SINE MIR 51 242 -20 360 0 0 0 chr11 131351398 131351438 -17432034 + (TG)n Simple_repeat Simple_repeat 1 40 0 2108 117 3 7 chr11 131351439 131351721 -17431751 - AluSx SINE Alu -30 282 2 353 285 89 0 chr11 131352457 131352615 -17430857 + MARNA DNA Mariner 145 316 -270 242 330 9 9 chr11 131352654 131352766 -17430706 - MARNA DNA Mariner -188 398 287 394 241 76 106 chr11 131352952 131353188 -17430284 + LTR16C LTR ERVL 263 491 0 1543 116 40 116 chr11 131353332 131353401 -17430071 - L1MB7 LINE L1 0 6184 6111 873 159 8 0 chr11 131353401 131353533 -17429939 + FLAM_C SINE Alu 1 133 0 1543 116 40 116 chr11 131353533 131353859 -17429613 - L1MB7 LINE L1 -73 6111 5819 1059 157 6 6 chr11 131353860 131354026 -17429446 - FRAM SINE Alu -12 164 1 26 30 0 0 chr11 131354026 131354059 -17429413 + AT_rich Low_complexity Low_complexity 1 33 0 905 110 0 0 chr11 131354059 131354177 -17429295 - FLAM_C SINE Alu -9 134 17 515 262 86 19 chr11 131354178 131354445 -17429027 - L1PB4 LINE L1 -330 5826 5542 988 249 151 68 chr11 131354546 131354917 -17428555 - L1MC4a LINE L1 -1835 5973 5634 897 147 0 0 chr11 131354917 131355046 -17428426 + FLAM_C SINE Alu 5 133 0 988 249 151 68 chr11 131355046 131355338 -17428134 - L1MC4a LINE L1 -2174 5634 5255 953 257 38 52 chr11 131355443 131355789 -17427683 + MLT1I LTR MaLR 66 406 -3 2121 108 0 33 chr11 131355926 131356233 -17427239 + AluSq SINE Alu 2 298 -15 495 33 0 0 chr11 131356348 131356409 -17427063 + (TGGA)n Simple_repeat Simple_repeat 1 61 0 448 326 43 0 chr11 131356416 131356600 -17426872 - L3 LINE CR1 -649 928 737 344 216 15 194 chr11 131356643 131356916 -17426556 + MIR SINE MIR 20 243 -19 605 230 311 39 chr11 131358601 131358969 -17424503 + L2 LINE L2 2606 3066 -247 341 339 77 56 chr11 131359105 131359858 -17423614 - L2 LINE L2 -1232 2082 1314 543 359 99 0 chr11 131359885 131360158 -17423314 + L3 LINE CR1 1273 1572 -5 630 179 9 9 chr11 131360571 131360683 -17422789 + AluSp/q SINE Alu 164 275 -38 883 257 56 65 chr11 131360992 131361330 -17422142 - MLT1J LTR MaLR -79 432 98 1286 160 5 5 chr11 131361960 131362179 -17421293 - AluJo SINE Alu -93 219 1 1401 87 34 0 chr11 131362845 131363052 -17420420 - MER34B LTR ERV1 0 565 352 756 128 0 0 chr11 131363055 131363164 -17420308 - AluSg/x SINE Alu -12 300 192 338 273 70 39 chr11 131363776 131363904 -17419568 - MIR3 SINE MIR -71 137 6 191 200 167 0 chr11 131363940 131364000 -17419472 + MIR SINE MIR 77 146 -116 352 299 90 51 chr11 131364389 131364566 -17418906 + MIR3 SINE MIR 21 204 -4 416 282 13 72 chr11 131365125 131365306 -17418166 + MIR SINE MIR 49 217 -45 193 276 118 26 chr11 131365384 131365460 -17418012 - MIR SINE MIR -78 184 102 904 156 54 0 chr11 131365565 131365732 -17417740 - MER34B LTR ERV1 -386 179 4 215 301 55 0 chr11 131365821 131365894 -17417578 - L2 LINE L2 -5 3308 3232 484 247 44 38 chr11 131365940 131366098 -17417374 + MIR SINE MIR 4 162 -100 1264 219 41 34 chr11 131366098 131366418 -17417054 - MLT1C LTR MaLR 0 467 146 1944 92 0 8 chr11 131366478 131366738 -17416734 - AluSq SINE Alu -45 268 11 678 149 92 7 chr11 131366752 131366893 -17416579 - MLT1C LTR MaLR -314 153 1 475 240 10 0 chr11 131366893 131366997 -17416475 + MIR SINE MIR 158 262 0 1020 306 128 11 chr11 131367066 131367432 -17416040 - MLT1K LTR MaLR -121 467 59 286 203 0 58 chr11 131367498 131367567 -17415905 + L2 LINE L2 3208 3272 0 1967 140 13 0 chr11 131367610 131367918 -17415554 + AluSx SINE Alu 1 312 0 369 321 44 7 chr11 131367964 131368101 -17415371 - MIR SINE MIR -119 143 2 292 209 9 86 chr11 131368394 131368499 -17414973 - L1ME LINE L1 -290 5872 5776 717 104 191 0 chr11 131368499 131368614 -17414858 - FRAM SINE Alu -19 157 21 732 200 30 0 chr11 131368615 131368780 -17414692 - L1ME LINE L1 -375 5787 5618 304 254 127 9 chr11 131369215 131369325 -17414147 + L2 LINE L2 3191 3313 0 322 297 58 29 chr11 131369547 131369685 -17413787 - MIR SINE MIR -70 192 51 2028 117 21 0 chr11 131370065 131370356 -17413116 + AluSx SINE Alu 7 303 -9 236 284 126 0 chr11 131370928 131371023 -17412449 + MIR3 SINE MIR 58 164 -44 373 273 33 16 chr11 131371438 131371559 -17411913 - L2 LINE L2 -18 3295 3173 538 255 170 24 chr11 131371766 131371978 -17411494 - MIR SINE MIR -3 259 17 263 355 28 0 chr11 131372206 131372313 -17411159 + L3b LINE CR1 1326 1435 -148 2250 98 0 7 chr11 131373562 131373869 -17409603 + AluSc SINE Alu 1 305 -4 2031 127 0 7 chr11 131373869 131374168 -17409304 + AluSx SINE Alu 1 297 -15 2837 87 92 5 chr11 131374356 131374768 -17408704 - LTR7 LTR ERV1 -2 448 1 672 269 83 14 chr11 131375106 131375322 -17408150 + MIR SINE MIR 9 239 -23 236 321 107 0 chr11 131375418 131375502 -17407970 + MIR3 SINE MIR 114 206 -2 353 244 31 0 chr11 131376398 131376504 -17406968 - MIR SINE MIR -92 116 7 1126 265 163 20 chr11 131377004 131377570 -17405902 + L1ME3A LINE L1 5342 5994 -176 577 309 129 5 chr11 131377868 131378078 -17405394 + MIR SINE MIR 20 255 -7 286 263 58 89 chr11 131378336 131378526 -17404946 - MIR SINE MIR -50 212 29 312 312 135 0 chr11 131378663 131378804 -17404668 + MIR SINE MIR 63 222 -40 305 373 17 0 chr11 131378813 131378931 -17404541 + L2 LINE L2 3153 3272 0 357 253 100 53 chr11 131380652 131380822 -17402650 + MIR SINE MIR 16 193 -69 191 171 0 0 chr11 131381261 131381296 -17402176 + L2 LINE L2 3025 3059 -213 205 182 0 0 chr11 131381339 131381383 -17402089 + A-rich Low_complexity Low_complexity 5 48 0 787 147 14 35 chr11 131381883 131382026 -17401446 - AluJo SINE Alu -172 140 1 199 333 219 8 chr11 131382791 131382914 -17400558 + MIR3 SINE MIR 5 153 -55 582 15 0 0 chr11 131383712 131383779 -17399693 + (CAATT)n Simple_repeat Simple_repeat 5 71 0 1915 238 57 100 chr11 131383779 131384501 -17398971 - MER21B LTR ERV1 -160 703 13 232 303 233 38 chr11 131384527 131384814 -17398658 + L3 LINE CR1 1131 1473 -104 * 393 306 9 0 chr11 131384809 131384920 -17398552 + L2 LINE L2 3194 3305 -8 418 207 54 9 chr11 131385141 131385252 -17398220 + HAL1 LINE L1 4 119 -2388 403 234 56 0 chr11 131385268 131385375 -17398097 + HAL1 LINE L1 1 113 -2394 2639 145 10 77 chr11 131385380 131385801 -17397671 + MER41B LTR ERV1 100 318 -160 2321 86 0 0 chr11 131385801 131386105 -17397367 - AluSx SINE Alu -8 304 1 2639 145 10 77 chr11 131386105 131386245 -17397227 + MER41B LTR ERV1 318 466 -12 469 278 63 45 chr11 131386251 131386474 -17396998 + HAL1 LINE L1 115 341 -2166 1957 136 0 0 chr11 131386480 131386760 -17396712 + AluSx SINE Alu 1 280 -32 189 0 0 0 chr11 131386760 131386781 -17396691 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 768 226 49 47 chr11 131386783 131387123 -17396349 - MSTC LTR MaLR -35 389 1 334 214 0 21 chr11 131387124 131387196 -17396276 + AluJo SINE Alu 1 50 -251 * 488 110 0 0 chr11 131387182 131387255 -17396217 + THE1C LTR MaLR 101 173 -202 1280 171 7 60 chr11 131387270 131387338 -17396134 + AluJo SINE Alu 49 119 -193 2241 117 0 0 chr11 131387338 131387647 -17395825 - AluSg SINE Alu 0 310 2 1280 171 7 60 chr11 131387647 131387847 -17395625 + AluJo SINE Alu 119 303 -9 453 235 81 34 chr11 131387847 131387996 -17395476 + HAL1 LINE L1 398 553 -1954 313 240 42 21 chr11 131388001 131388097 -17395375 - MER34 LTR ERV1 -5 537 440 377 203 0 27 chr11 131388428 131388502 -17394970 + HAL1 LINE L1 603 674 -1833 320 277 53 11 chr11 131388605 131388699 -17394773 - L3 LINE CR1 -64 1513 1416 1218 153 27 9 chr11 131388720 131388943 -17394529 - AluJo SINE Alu -1 311 85 794 291 56 26 chr11 131388976 131389282 -17394190 + MLT1L LTR MaLR 139 453 -162 499 314 214 31 chr11 131389402 131389630 -17393842 - L3 LINE CR1 -627 950 765 2203 93 0 26 chr11 131389630 131389942 -17393530 - AluSx SINE Alu -8 304 1 499 314 214 31 chr11 131389942 131390203 -17393269 - L3 LINE CR1 -812 765 371 2089 128 0 0 chr11 131390709 131391007 -17392465 - AluSx SINE Alu -14 298 1 321 204 26 15 chr11 131392362 131392456 -17391016 - MIR SINE MIR -88 120 25 558 282 50 25 chr11 131393285 131393487 -17389985 - MER3 DNA MER1_type -2 207 1 200 302 129 0 chr11 131393764 131393880 -17389592 + MIR3 SINE MIR 9 139 -69 262 217 50 0 chr11 131394095 131394155 -17389317 - MIR SINE MIR -60 148 86 419 331 34 0 chr11 131394610 131394785 -17388687 - MIR SINE MIR -13 249 69 215 261 0 15 chr11 131395041 131395106 -17388366 + G-rich Low_complexity Low_complexity 3 66 0 3022 152 76 11 chr11 131395598 131396139 -17387333 + LTR26E LTR ERV1 1 576 -46 2143 193 59 130 chr11 131396146 131396436 -17387036 + LTR8A LTR ERV1 1 310 -417 2068 105 3 29 chr11 131396436 131396742 -17386730 + AluSg SINE Alu 1 298 -12 2143 193 59 130 chr11 131396742 131397234 -17386238 + LTR8A LTR ERV1 310 727 0 251 209 0 0 chr11 131397237 131397280 -17386192 + LTR26B LTR ERV1 489 531 0 742 156 6 23 chr11 131397512 131397685 -17385787 + CT-rich Low_complexity Low_complexity 2 171 0 1037 141 21 0 chr11 131397823 131398014 -17385458 - LTR23 LTR ERV1 -10 427 233 1006 180 0 71 chr11 131398015 131398075 -17385397 + AluJo SINE Alu 90 153 -159 1700 184 0 3 chr11 131398075 131398369 -17385103 + AluSx SINE Alu 1 293 -19 1006 180 0 71 chr11 131398369 131398547 -17384925 + AluJo SINE Alu 153 311 -1 1117 153 52 31 chr11 131398548 131398777 -17384695 - LTR23 LTR ERV1 -203 234 1 3658 104 16 7 chr11 131398930 131399486 -17383986 - MER34C LTR ERV1 0 585 25 2252 77 0 3 chr11 131399646 131399933 -17383539 - AluSc SINE Alu -19 290 5 2165 115 0 0 chr11 131400396 131400691 -17382781 + AluSx SINE Alu 1 295 -17 331 204 23 57 chr11 131403620 131403708 -17379764 + MSTD LTR MaLR 1 85 -311 1431 166 3 74 chr11 131403708 131404020 -17379452 + AluJo SINE Alu 10 300 -12 2107 142 0 0 chr11 131404020 131404330 -17379142 + AluSg SINE Alu 1 310 0 1431 166 3 74 chr11 131404330 131404343 -17379129 + AluJo SINE Alu 300 312 0 535 242 93 43 chr11 131404348 131404509 -17378963 + MSTD LTR MaLR 70 238 -158 * 932 195 25 20 chr11 131404507 131404707 -17378765 + MSTD LTR MaLR 194 394 -2 2236 102 3 6 chr11 131404985 131405298 -17378174 + AluSx SINE Alu 1 312 0 1269 111 0 0 chr11 131405298 131405479 -17377993 + AluSg/x SINE Alu 129 309 -1 232 297 168 0 chr11 131407630 131407731 -17375741 + L2 LINE L2 3147 3264 -8 613 129 0 0 chr11 131407825 131407910 -17375562 + AluS SINE Alu 7 91 -221 290 298 255 0 chr11 131407971 131408112 -17375360 - MIR3 SINE MIR -16 192 16 208 333 11 23 chr11 131408761 131408848 -17374624 - MIR3 SINE MIR -37 171 86 270 276 110 39 chr11 131408870 131408997 -17374475 + MIR SINE MIR 26 161 -101 391 217 43 35 chr11 131409287 131409402 -17374070 + MIR3 SINE MIR 70 185 -23 2254 98 10 0 chr11 131410062 131410367 -17373105 - AluSp SINE Alu -5 308 1 503 380 58 0 chr11 131410922 131411196 -17372276 + ERVL LTR ERVL 3 292 -4704 870 294 23 13 chr11 131411555 131411865 -17371607 + ERVL LTR ERVL 742 1054 -3942 837 234 47 23 chr11 131411938 131412150 -17371322 + ERVL LTR ERVL 2201 2422 -2574 1666 176 118 12 chr11 131412150 131412480 -17370992 + MLT1A1 LTR MaLR 1 365 0 837 234 47 23 chr11 131412480 131412524 -17370948 + ERVL LTR ERVL 2422 2463 -2533 2144 137 0 6 chr11 131412684 131412998 -17370474 + AluSx SINE Alu 1 312 0 260 266 32 24 chr11 131413037 131413241 -17370231 + ERVL LTR ERVL 4799 5053 -711 934 299 71 2 chr11 131413640 131414035 -17369437 + LTR16B LTR ERVL 37 458 -6 461 293 88 19 chr11 131415769 131415851 -17367621 + MIR SINE MIR 17 92 -170 2167 187 20 18 chr11 131415851 131416246 -17367226 + MSTD LTR MaLR 1 396 0 461 293 88 19 chr11 131416246 131416378 -17367094 + MIR SINE MIR 92 246 -16 214 286 36 0 chr11 131417577 131417633 -17365839 + L2 LINE L2 3255 3312 -1 526 251 82 20 chr11 131418282 131418477 -17364995 - MER96B DNA MER1_type? -36 381 175 344 59 20 0 chr11 131419760 131419811 -17363661 + (CTCA)n Simple_repeat Simple_repeat 3 54 0 793 112 9 0 chr11 131419972 131420079 -17363393 - AluJb SINE Alu -204 108 1 291 310 0 0 chr11 131420079 131420150 -17363322 + L2 LINE L2 2686 2756 -558 468 286 187 18 chr11 131420229 131420462 -17363010 + L2 LINE L2 2871 3063 -209 2455 57 0 25 chr11 131420462 131420780 -17362692 - AluY SINE Alu -1 310 1 468 286 187 18 chr11 131420780 131420889 -17362583 + L2 LINE L2 3063 3271 -1 2127 130 20 29 chr11 131421382 131421729 -17361743 + MER2 DNA MER2_type 1 344 0 434 322 58 35 chr11 131422047 131422221 -17361251 - MIR SINE MIR -34 228 51 193 238 0 0 chr11 131422884 131422926 -17360546 + MIR SINE MIR 109 150 -112 218 292 15 15 chr11 131423261 131423326 -17360146 - L2 LINE L2 -2 3270 3206 260 254 0 0 chr11 131425061 131425124 -17358348 + MIR SINE MIR 200 262 0 334 317 62 8 chr11 131425286 131425457 -17358015 - MIR SINE MIR -45 217 26 445 282 129 24 chr11 131425534 131425704 -17357768 + MIR SINE MIR 69 256 -6 540 0 0 0 chr11 131425911 131425971 -17357501 + (TG)n Simple_repeat Simple_repeat 1 60 0 189 221 279 0 chr11 131426458 131426526 -17356946 + MIR SINE MIR 63 149 -113 2313 97 0 3 chr11 131426528 131426838 -17356634 + AluSx SINE Alu 1 309 -3 498 136 18 18 chr11 131426921 131427031 -17356441 + (TGG)n Simple_repeat Simple_repeat 2 111 0 439 349 129 0 chr11 131427168 131427377 -17356095 + L3 LINE CR1 1217 1452 -125 1695 188 10 10 chr11 131427438 131427747 -17355725 - AluJo SINE Alu -3 309 1 202 250 21 0 chr11 131427796 131427844 -17355628 - L2 LINE L2 -20 3293 3245 645 110 10 0 chr11 131427862 131427962 -17355510 + U6 snRNA snRNA 1 101 -6 440 191 55 158 chr11 131428824 131428885 -17354587 - MER5B DNA MER1_type -6 172 106 2120 128 0 3 chr11 131428885 131429183 -17354289 + AluSc SINE Alu 1 297 -12 440 191 55 158 chr11 131429183 131429194 -17354278 - MER5B DNA MER1_type -72 106 95 1584 133 110 4 chr11 131429194 131429290 -17354182 + AluJo SINE Alu 14 98 -214 360 0 0 0 chr11 131429290 131429330 -17354142 + (TAA)n Simple_repeat Simple_repeat 2 41 0 1584 133 110 4 chr11 131429330 131429497 -17353975 + AluJo SINE Alu 98 305 -7 440 191 55 158 chr11 131429497 131429606 -17353866 - MER5B DNA MER1_type -83 95 9 222 302 23 12 chr11 131430127 131430213 -17353259 + L2 LINE L2 2967 3053 -219 205 260 13 39 chr11 131430438 131430515 -17352957 + MIR3 SINE MIR 93 167 -41 241 320 26 0 chr11 131430552 131430630 -17352842 + L2 LINE L2 2954 3033 -239 223 294 0 0 chr11 131433379 131433430 -17350042 + (CGTG)n Simple_repeat Simple_repeat 1 51 0 186 43 0 0 chr11 131434572 131434595 -17348877 + (GGGGA)n Simple_repeat Simple_repeat 2 24 0 225 0 0 0 chr11 131436532 131436557 -17346915 + (TCC)n Simple_repeat Simple_repeat 2 26 0 338 220 50 40 chr11 131437223 131437323 -17346149 - MIR SINE MIR -82 180 80 185 358 54 14 chr11 131440046 131440194 -17343278 + L2 LINE L2 2886 3039 -233 539 101 0 13 chr11 131440459 131440538 -17342934 + Alu SINE Alu 220 297 -12 789 279 94 42 chr11 131440538 131441074 -17342398 + L2 LINE L2 2534 3154 -159 2303 81 3 3 chr11 131441074 131441371 -17342101 - AluSx SINE Alu -15 297 1 789 279 94 42 chr11 131441371 131441540 -17341932 + L2 LINE L2 3154 3313 0 2172 102 27 0 chr11 131441756 131442051 -17341421 - AluSx SINE Alu -9 303 1 403 227 35 48 chr11 131444616 131444779 -17338693 - MIR SINE MIR -62 146 18 283 306 81 24 chr11 131445501 131445625 -17337847 - MIR SINE MIR -2 260 130 204 313 170 9 chr11 131446660 131446772 -17336700 - MIR SINE MIR -63 145 16 351 246 8 103 chr11 131446805 131446838 -17336634 + MER5A DNA MER1_type 44 79 -110 2284 108 0 0 chr11 131446838 131447143 -17336329 + AluSg SINE Alu 1 305 -5 351 246 8 103 chr11 131447143 131447235 -17336237 + MER5A DNA MER1_type 79 157 -32 299 295 13 56 chr11 131448442 131448623 -17334849 + GA-rich Low_complexity Low_complexity 5 292 0 347 252 29 29 chr11 131449995 131450098 -17333374 - HAL1b LINE L1 -2 1346 1244 297 339 0 40 chr11 131450305 131450429 -17333043 + MIR SINE MIR 89 207 -55 197 382 91 9 chr11 131450853 131450963 -17332509 - L2 LINE L2 -3 3310 3192 743 274 155 14 chr11 131450972 131451268 -17332204 + L2 LINE L2 2923 3260 -12 237 312 161 0 chr11 131451771 131451864 -17331608 + L2 LINE L2 3202 3309 -4 373 335 25 6 chr11 131452094 131452252 -17331220 + MIR3 SINE MIR 37 197 -11 184 366 40 40 chr11 131453977 131454078 -17329394 - L3b LINE CR1 -163 1420 1320 24 53 0 0 chr11 131459142 131459180 -17324292 + GC_rich Low_complexity Low_complexity 1 38 0 21 89 0 0 chr11 131459306 131459362 -17324110 + GC_rich Low_complexity Low_complexity 1 56 0 25 65 0 0 chr11 131459453 131459499 -17323973 + GC_rich Low_complexity Low_complexity 1 46 0 219 233 14 27 chr11 131459926 131459999 -17323473 + G-rich Low_complexity Low_complexity 5 76 0 305 293 107 21 chr11 131460018 131460158 -17323314 - MIR3 SINE MIR -17 191 40 273 334 51 86 chr11 131460894 131461325 -17322147 - L2 LINE L2 -7 3265 2850 550 0 0 0 chr11 131461588 131461649 -17321823 + (TTTTA)n Simple_repeat Simple_repeat 4 80 0 2135 99 0 0 chr11 131461649 131461931 -17321541 - AluSx SINE Alu -1 342 1 314 279 47 74 chr11 131462102 131462317 -17321155 - L2 LINE L2 -220 3052 2844 401 303 7 35 chr11 131462429 131462574 -17320898 + MIR SINE MIR 116 256 -6 272 293 0 0 chr11 131462635 131462693 -17320779 - L2 LINE L2 -5 3267 3210 279 0 0 0 chr11 131463402 131463433 -17320039 + (TG)n Simple_repeat Simple_repeat 1 31 0 229 334 113 45 chr11 131466135 131466470 -17317002 + L2 LINE L2 2517 2874 -440 750 256 50 16 chr11 131467867 131468109 -17315363 + MIR SINE MIR 13 262 0 702 197 96 5 chr11 131468240 131468428 -17315044 - MER20 DNA MER1_type -14 205 1 27 0 0 0 chr11 131470142 131470169 -17313303 + AT_rich Low_complexity Low_complexity 1 27 0 308 333 31 16 chr11 131471469 131471598 -17311874 + MIR SINE MIR 51 181 -81 183 42 0 0 chr11 131472236 131472260 -17311212 + (TG)n Simple_repeat Simple_repeat 1 24 0 703 278 117 0 chr11 131472437 131472660 -17310812 - MIR SINE MIR 0 262 14 248 303 97 71 chr11 131472991 131473146 -17310326 + MIR SINE MIR 33 191 -71 227 294 55 46 chr11 131473931 131474040 -17309432 - MIR3 SINE MIR -41 167 60 266 279 85 0 chr11 131474908 131475047 -17308425 - MIR SINE MIR -51 157 11 182 403 0 0 chr11 131475300 131475377 -17308095 + L2 LINE L2 3191 3267 -5 227 433 16 0 chr11 131475726 131475853 -17307619 - MIR SINE MIR -63 145 17 671 191 53 15 chr11 131475935 131476066 -17307406 - AluJb SINE Alu -176 136 1 438 319 88 19 chr11 131477362 131477574 -17305898 - MIR SINE MIR -7 255 19 347 370 17 42 chr11 131478111 131478349 -17305123 - L3b LINE CR1 -59 1524 1293 420 240 137 19 chr11 131478395 131478607 -17304865 + MIR SINE MIR 8 242 -20 290 341 75 28 chr11 131479233 131479447 -17304025 + L2 LINE L2 2752 2975 -339 322 96 37 162 chr11 131479782 131479918 -17303554 - L1MA4 LINE L1 0 6300 6182 264 77 0 0 chr11 131480281 131480320 -17303152 + (CAGAGA)n Simple_repeat Simple_repeat 4 42 0 1787 148 38 3 chr11 131480577 131480868 -17302604 + L1MB7 LINE L1 5869 6169 -15 336 320 110 67 chr11 131482443 131482862 -17300610 - L2 LINE L2 -2 3270 2834 2315 101 0 0 chr11 131483186 131483482 -17299990 + AluSx SINE Alu 1 296 -16 210 354 0 0 chr11 131483536 131483601 -17299871 - L2 LINE L2 -3 3269 3205 348 203 14 0 chr11 131483913 131483982 -17299490 + MER20 DNA MER1_type 7 76 -143 188 346 0 0 chr11 131484345 131484423 -17299049 + L2 LINE L2 2982 3059 -213 263 213 0 0 chr11 131484966 131485013 -17298459 + L2 LINE L2 3261 3307 -6 390 281 117 18 chr11 131487142 131487313 -17296159 + L3 LINE CR1 1387 1574 -3 2285 106 0 0 chr11 131487428 131487731 -17295741 - AluSq SINE Alu -8 305 3 227 149 0 21 chr11 131488918 131488965 -17294507 + (CACG)n Simple_repeat Simple_repeat 3 48 0 1937 136 90 3 chr11 131490904 131491236 -17292236 - MER46B DNA MER2_type 0 236 1 1023 206 21 16 chr11 131491476 131491719 -17291753 + MIR SINE MIR 19 262 0 233 163 0 0 chr11 131492043 131492092 -17291380 - L2 LINE L2 -318 2954 2906 279 325 85 18 chr11 131494174 131494358 -17289114 + MIR SINE MIR 30 220 -42 355 250 50 62 chr11 131494940 131495048 -17288424 - MIR SINE MIR -31 231 124 1924 100 7 11 chr11 131495048 131495318 -17288154 + AluSc SINE Alu 36 304 -5 355 250 50 62 chr11 131495318 131495369 -17288103 - MIR SINE MIR -138 124 74 561 191 79 21 chr11 131495496 131495685 -17287787 + HAL1 LINE L1 937 1136 -1371 2257 131 88 11 chr11 131495743 131496177 -17287295 - MER39B LTR ERV1 -186 467 1 743 186 174 46 chr11 131496177 131496196 -17287276 + HAL1 LINE L1 1132 1147 -1360 2281 108 26 62 chr11 131496196 131496542 -17286930 + THE1C LTR MaLR 1 333 -42 2088 132 7 0 chr11 131496542 131496846 -17286626 - AluSx SINE Alu -6 306 1 2281 108 26 62 chr11 131496846 131496888 -17286584 + THE1C LTR MaLR 333 375 0 743 186 174 46 chr11 131496888 131497195 -17286277 + HAL1 LINE L1 1147 1500 -1007 619 255 63 79 chr11 131497201 131497271 -17286201 + HAL1 LINE L1 2133 2203 -304 405 0 0 0 chr11 131497271 131497316 -17286156 + (TG)n Simple_repeat Simple_repeat 1 45 0 619 255 63 79 chr11 131497316 131497626 -17285846 + HAL1 LINE L1 2203 2507 0 239 180 131 16 chr11 131498555 131498616 -17284856 - MIR SINE MIR -113 149 82 376 275 208 10 chr11 131498855 131499062 -17284410 - MIR SINE MIR -13 249 2 2209 102 0 3 chr11 131499128 131499423 -17284049 - AluSc SINE Alu -15 294 1 318 296 17 22 chr11 131499823 131500002 -17283470 + (TG)n Simple_repeat Simple_repeat 2 179 0 250 239 15 45 chr11 131501097 131501164 -17282308 + MIR SINE MIR 90 154 -108 620 237 40 0 chr11 131501397 131501549 -17281923 - L2 LINE L2 0 3313 3156 232 333 0 0 chr11 131501732 131501798 -17281674 - MIR SINE MIR 0 262 197 262 315 126 16 chr11 131501957 131502084 -17281388 + MIR SINE MIR 122 262 0 282 172 179 67 chr11 131502281 131502415 -17281057 - MER92B LTR ERV1 0 636 488 1853 168 3 19 chr11 131502448 131502764 -17280708 - AluSx SINE Alu -1 311 1 180 0 0 0 chr11 131502764 131502784 -17280688 + (TTA)n Simple_repeat Simple_repeat 1 20 0 1071 222 174 31 chr11 131504566 131504980 -17278492 - MER92B LTR ERV1 -163 473 1 1249 135 0 112 chr11 131506280 131506576 -17276896 + AluJo SINE Alu 50 312 0 476 258 75 55 chr11 131506742 131507176 -17276296 - LTR48B LTR ERV1 -11 633 173 264 277 0 85 chr11 131507194 131507288 -17276184 - MER34 LTR ERV1 -454 88 3 249 143 0 0 chr11 131507771 131507813 -17275659 + L2 LINE L2 3217 3258 -14 328 256 124 8 chr11 131508405 131508526 -17274946 - MIR SINE MIR 0 262 128 221 308 39 0 chr11 131508845 131508923 -17274549 + L2 LINE L2 3233 3313 0 772 155 17 0 chr11 131509471 131509633 -17273839 - FLAM_A SINE Alu 0 164 1 1704 115 36 97 chr11 131509660 131509990 -17273482 - AluSg SINE Alu 0 310 1 1804 180 0 3 chr11 131510122 131510427 -17273045 - AluJo SINE Alu -8 304 1 236 299 0 0 chr11 131510429 131510506 -17272966 - MER96B DNA MER1_type? -337 80 4 368 271 52 0 chr11 131510580 131510676 -17272796 - MER91A DNA MER1_type -95 101 1 1679 133 12 0 chr11 131510828 131511068 -17272404 - AluSx SINE Alu -69 243 1 229 193 0 0 chr11 131511069 131511126 -17272346 - L1M4 LINE L1 -836 5310 5254 197 339 34 42 chr11 131511134 131511252 -17272220 + L2 LINE L2 2745 2861 -453 838 150 0 0 chr11 131511415 131511548 -17271924 + FLAM_C SINE Alu 1 133 0 30 0 0 0 chr11 131511548 131511578 -17271894 + AT_rich Low_complexity Low_complexity 1 30 0 226 350 57 32 chr11 131511728 131511851 -17271621 - L3 LINE CR1 -12 1565 1440 413 324 156 0 chr11 131512073 131512252 -17271220 - L3 LINE CR1 -189 1388 1182 2014 127 48 61 chr11 131512334 131512713 -17270759 + THE1C LTR MaLR 1 374 -1 1896 202 50 11 chr11 131512995 131513431 -17270041 - MLT1C LTR MaLR -6 461 9 181 306 0 48 chr11 131513438 131513500 -17269972 - L2 LINE L2 -87 3185 3127 320 366 78 3 chr11 131513626 131513935 -17269537 - L2 LINE L2 -386 2928 2597 401 161 47 114 chr11 131514789 131514938 -17268534 + LTR37A LTR ERV1 1 139 -287 2049 127 3 16 chr11 131564985 131565301 -17218171 - AluSx SINE Alu 0 312 1 2095 55 0 0 chr11 131566455 131566712 -17216760 - AluY SINE Alu -54 257 1 271 263 73 22 chr11 131566871 131567008 -17216464 + Charlie7 DNA MER1_type 33 176 -2436 359 283 0 0 chr11 131567063 131567162 -17216310 + Charlie7 DNA MER1_type 297 395 -2217 322 318 46 53 chr11 131567179 131567330 -17216142 + L1MEd LINE L1 23 172 -5947 570 363 136 11 chr11 131567597 131567966 -17215506 + L1M4 LINE L1 4732 5146 -1000 2159 113 0 0 chr11 131568097 131568388 -17215084 - AluSx SINE Alu -15 297 7 249 109 0 0 chr11 131568823 131568869 -17214603 + (GA)n Simple_repeat Simple_repeat 2 47 0 1150 205 149 28 chr11 131570034 131570356 -17213116 - MLT1A1 LTR MaLR -2 363 3 2305 198 125 8 chr11 131570736 131571241 -17212231 + MLT1F1 LTR MaLR 1 564 -3 352 276 82 42 chr11 131571677 131571916 -17211556 + MIR SINE MIR 2 251 -11 418 268 102 32 chr11 131571967 131572124 -17211348 - MIR SINE MIR -8 254 87 1620 117 147 8 chr11 131572448 131572714 -17210758 + AluSx SINE Alu 1 303 -9 535 229 134 3 chr11 131572824 131573008 -17210464 + L1ME2 LINE L1 5966 6178 0 230 388 44 6 chr11 131573148 131573308 -17210164 - L2 LINE L2 -604 2710 2545 353 291 73 26 chr11 131573574 131573725 -17209747 + MIR SINE MIR 28 185 -77 1734 82 0 47 chr11 131574624 131574879 -17208593 - AluSq SINE Alu -13 300 58 198 316 51 0 chr11 131574879 131574958 -17208514 - MIR SINE MIR -121 141 59 214 245 0 0 chr11 131578356 131578409 -17205063 + GA-rich Low_complexity Low_complexity 1 53 0 2219 98 7 0 chr11 131579145 131579442 -17204030 + AluSg SINE Alu 1 299 -11 270 254 102 42 chr11 131579579 131579697 -17203775 - L2 LINE L2 0 3313 3189 304 264 66 16 chr11 131579697 131579824 -17203648 - MIR SINE MIR -60 148 36 254 250 23 23 chr11 131579810 131579898 -17203574 + MIR3 SINE MIR 109 196 -12 * 475 311 78 6 chr11 131581737 131581917 -17201555 + MER91A DNA MER1_type 1 193 -3 298 343 20 20 chr11 131581981 131582127 -17201345 + MIR SINE MIR 75 220 -42 315 314 21 14 chr11 131583834 131583974 -17199498 + CT-rich Low_complexity Low_complexity 3 143 0 1184 245 135 58 chr11 131584764 131585299 -17198173 + MLT1K LTR MaLR 13 588 0 556 265 80 10 chr11 131585555 131585888 -17197584 + LTR33 LTR ERVL 2 380 -141 212 256 0 0 chr11 131586327 131586370 -17197102 + L2 LINE L2 3248 3290 -23 383 341 0 0 chr11 131586454 131586580 -17196892 + L2 LINE L2 2930 3055 -217 213 309 25 25 chr11 131588495 131588576 -17194896 + MER5B DNA MER1_type 74 154 -24 369 0 0 0 chr11 131588950 131588991 -17194481 + (GGA)n Simple_repeat Simple_repeat 1 41 0 288 211 0 0 chr11 131589150 131589207 -17194265 + MIR SINE MIR 98 154 -108 2029 126 0 0 chr11 131589217 131589510 -17193962 + AluSx SINE Alu 2 294 -18 369 305 132 10 chr11 131589673 131589838 -17193634 + MIR SINE MIR 14 192 -62 330 279 115 0 chr11 131589941 131590045 -17193427 + MIR SINE MIR 73 188 -74 334 250 12 24 chr11 131591343 131591427 -17192045 + MIR SINE MIR 41 123 -85 277 240 209 15 chr11 131591947 131592082 -17191390 - MIR3 SINE MIR -14 194 20 379 307 145 22 chr11 131592749 131592977 -17190495 + MIR SINE MIR 7 262 0 203 179 0 119 chr11 131592992 131593059 -17190413 - MIR SINE MIR -58 150 107 183 162 0 0 chr11 131593454 131593491 -17189981 + (TG)n Simple_repeat Simple_repeat 1 37 0 200 215 65 97 chr11 131593531 131593624 -17189848 + MIR SINE MIR 10 99 -163 231 305 86 16 chr11 131593962 131594090 -17189382 + MIR SINE MIR 71 207 -55 210 333 12 0 chr11 131594133 131594217 -17189255 + MIR SINE MIR 164 248 -14 202 235 176 20 chr11 131594722 131594824 -17188648 + MIR SINE MIR 33 150 -58 650 255 129 36 chr11 131595867 131596145 -17187327 + LTR16A1 LTR ERVL 147 450 -7 353 262 65 0 chr11 131596153 131596260 -17187212 + MIR SINE MIR 79 192 -70 2484 180 58 12 chr11 131596298 131596781 -17186691 - MLT1D LTR MaLR 0 505 1 194 300 117 33 chr11 131597536 131597716 -17185756 + L2 LINE L2 3056 3250 -22 279 344 24 8 chr11 131597908 131598033 -17185439 + MIR SINE MIR 18 144 -64 876 152 111 6 chr11 131598048 131598219 -17185253 - MER5A DNA MER1_type 0 189 1 272 298 61 46 chr11 131598226 131598357 -17185115 - MER5A DNA MER1_type -21 168 36 225 264 95 81 chr11 131598228 131598376 -17185096 + MER5A DNA MER1_type 35 184 -5 * 607 263 6 6 chr11 131598425 131598438 -17185034 - L1MA10 LINE L1 0 6334 6322 527 293 6 17 chr11 131598438 131598619 -17184853 - L1ME1 LINE L1 -4 6162 5984 256 280 0 80 chr11 131599090 131599190 -17184282 - L2 LINE L2 -10 3262 3171 327 179 0 0 chr11 131599627 131599694 -17183778 + (TG)n Simple_repeat Simple_repeat 1 67 0 258 248 70 93 chr11 131599720 131599849 -17183623 - L2 LINE L2 0 3313 3188 242 263 51 131 chr11 131600061 131600236 -17183236 + MER5A DNA MER1_type 1 161 -28 1864 218 74 18 chr11 131600248 131600799 -17182673 - L1ME3A LINE L1 -7 6163 5582 1958 240 44 23 chr11 131600799 131601353 -17182119 + MLT1F1 LTR MaLR 1 567 0 1004 128 19 13 chr11 131601364 131601520 -17181952 - AluJo SINE Alu -15 297 141 399 71 0 0 chr11 131601523 131601579 -17181893 - L1PA6 LINE L1 0 6154 6099 1399 29 0 0 chr11 131601579 131601753 -17181719 + L1P LINE L1 4922 5095 -1051 821 147 7 22 chr11 131601753 131601889 -17181583 - AluJo SINE Alu -178 134 1 998 253 43 9 chr11 131601892 131602256 -17181216 - L1ME3A LINE L1 -581 5581 5208 2372 247 46 56 chr11 131602312 131602465 -17181007 - L1MC4 LINE L1 -3 8039 7886 252 0 0 0 chr11 131602465 131602493 -17180979 + (CA)n Simple_repeat Simple_repeat 2 29 0 2372 247 46 56 chr11 131602493 131603291 -17180181 - L1MC4 LINE L1 -156 7886 7097 312 323 60 36 chr11 131603289 131603537 -17179935 - L1ME3A LINE L1 -969 5177 4924 * 348 321 140 14 chr11 131603695 131603916 -17179556 - L1MC4a LINE L1 -1785 6023 5775 321 314 43 7 chr11 131604110 131604241 -17179231 - MIR3 SINE MIR -88 120 15 188 132 0 26 chr11 131604379 131604417 -17179055 - L3 LINE CR1 -123 1454 1418 650 283 75 57 chr11 131605159 131605424 -17178048 + L1ME4a LINE L1 5330 5599 -522 464 317 97 39 chr11 131605424 131605580 -17177892 - L2 LINE L2 -34 3279 3134 1783 148 58 0 chr11 131605580 131605858 -17177614 + AluSx SINE Alu 1 294 -18 464 317 97 39 chr11 131605858 131605889 -17177583 - L2 LINE L2 -179 3134 3106 405 0 0 0 chr11 131605889 131605934 -17177538 + (CA)n Simple_repeat Simple_repeat 1 45 0 464 317 97 39 chr11 131605934 131606158 -17177314 - L2 LINE L2 -207 3106 2843 515 122 70 9 chr11 131606287 131606402 -17177070 - L1MB1 LINE L1 -3 6165 6044 1166 91 0 40 chr11 131606402 131606575 -17176897 - L1PA10 LINE L1 -1 6167 6000 1388 186 16 4 chr11 131606575 131606828 -17176644 - AluJb SINE Alu -17 295 40 647 313 31 8 chr11 131606973 131607229 -17176243 + L1ME4a LINE L1 5654 5915 -206 303 267 158 17 chr11 131607261 131607381 -17176091 + L1ME4a LINE L1 5982 6118 -3 940 126 15 0 chr11 131607395 131607530 -17175942 + AluSg/x SINE Alu 156 292 -20 260 242 0 0 chr11 131607959 131608021 -17175451 + MIR SINE MIR 22 83 -179 201 88 73 15 chr11 131608071 131608139 -17175333 + (TA)n Simple_repeat Simple_repeat 2 73 0 291 297 285 25 chr11 131609321 131609644 -17173828 + L2 LINE L2 2401 2807 -507 352 231 87 58 chr11 131609661 131609765 -17173707 + L1ME LINE L1 5410 5516 -605 509 259 93 0 chr11 131609787 131609992 -17173480 - L2 LINE L2 -1188 2126 1903 513 266 0 0 chr11 131610065 131610219 -17173253 + (TG)n Simple_repeat Simple_repeat 2 155 0 396 55 0 0 chr11 131610683 131610738 -17172734 + (TG)n Simple_repeat Simple_repeat 2 56 0 184 256 40 96 chr11 131610915 131611040 -17172432 + L2 LINE L2 2971 3088 -184 210 281 85 12 chr11 131611110 131611192 -17172280 + MIR3 SINE MIR 104 191 -17 567 236 39 20 chr11 131611246 131611442 -17172030 - MIR SINE MIR -25 237 39 534 251 80 106 chr11 131611633 131611983 -17171489 - MER102b DNA MER1_type 0 341 1 772 298 34 45 chr11 131612388 131612882 -17170590 + L1MEd LINE L1 692 1180 -4939 214 262 0 16 chr11 131613095 131613156 -17170316 + (TTCA)n Simple_repeat Simple_repeat 1 60 0 814 172 0 15 chr11 131613231 131613365 -17170107 - FLAM_A SINE Alu 0 133 2 249 305 45 73 chr11 131614041 131614218 -17169254 - MIR3 SINE MIR -34 174 3 237 295 16 41 chr11 131615524 131615646 -17167826 + GA-rich Low_complexity Low_complexity 1 119 0 272 274 0 36 chr11 131615910 131615994 -17167478 + MLT1K LTR MaLR 162 242 -346 * 674 355 21 39 chr11 131615961 131616392 -17167080 + MLT1K LTR MaLR 142 564 -24 579 113 28 9 chr11 131617674 131617780 -17165692 - MSTB LTR MaLR 0 426 319 229 376 0 32 chr11 131618741 131618866 -17164606 - L2 LINE L2 -195 3077 2957 686 224 0 7 chr11 131619977 131620129 -17163343 - MER53 DNA DNA -17 172 22 333 370 84 19 chr11 131620482 131620869 -17162603 + L2 LINE L2 2651 3059 -213 292 321 63 44 chr11 131621170 131621329 -17162143 + L2 LINE L2 3106 3267 -5 492 243 59 151 chr11 131621407 131621712 -17161760 + L2 LINE L2 2995 3271 -1 181 398 32 21 chr11 131622368 131622461 -17161011 - L3 LINE CR1 -7 1570 1477 279 339 134 0 chr11 131622512 131622698 -17160774 - L3 LINE CR1 -107 1470 1260 2915 47 3 0 chr11 131623473 131623857 -17159615 - L1P LINE L1 -1127 5019 4635 2288 103 0 0 chr11 131623857 131624153 -17159319 + L1PA6 LINE L1 5853 6154 0 582 316 38 19 chr11 131624157 131624369 -17159103 + L3 LINE CR1 260 475 -1102 1376 272 77 15 chr11 131624369 131624847 -17158625 + L3 LINE CR1 857 1364 -213 410 323 0 8 chr11 131625109 131625236 -17158236 + MIR SINE MIR 16 141 -67 1711 144 61 13 chr11 131625503 131625816 -17157656 - MLT1A1 LTR MaLR -37 328 1 204 217 24 24 chr11 131626263 131626346 -17157126 + CT-rich Low_complexity Low_complexity 6 88 0 234 0 0 0 chr11 131627566 131627592 -17155880 + (T)n Simple_repeat Simple_repeat 1 26 0 603 247 0 32 chr11 131627598 131627756 -17155716 - MIR SINE MIR -65 197 45 231 337 11 11 chr11 131628061 131628156 -17155316 + L2 LINE L2 2992 3086 -186 232 338 14 43 chr11 131628324 131628463 -17155009 + MIR SINE MIR 23 150 -58 361 325 72 18 chr11 131628481 131628647 -17154825 + MER5B DNA MER1_type 1 175 -3 185 318 35 12 chr11 131628671 131628756 -17154716 - MIR SINE MIR -6 256 170 575 286 50 98 chr11 131628769 131629126 -17154346 - LTR16A LTR ERVL -6 444 105 203 377 113 0 chr11 131629227 131629333 -17154139 - MIR SINE MIR -125 137 20 357 43 0 0 chr11 131629415 131629462 -17154010 + (CA)n Simple_repeat Simple_repeat 1 47 0 308 283 94 7 chr11 131630285 131630423 -17153049 + L2 LINE L2 3164 3313 0 239 120 0 40 chr11 131630427 131630477 -17152995 + (TTCA)n Simple_repeat Simple_repeat 4 51 0 232 368 11 0 chr11 131633150 131633237 -17150235 - MIR3 SINE MIR -108 100 13 1768 172 72 12 chr11 131633314 131633674 -17149798 - MLT1A2 LTR MaLR 0 511 2 226 246 88 0 chr11 131633820 131633877 -17149595 - L2 LINE L2 -1 3271 3210 2306 87 3 10 chr11 131635416 131635728 -17147744 + AluSg SINE Alu 1 310 0 2462 11 11 0 chr11 131635748 131636029 -17147443 + AluYa5 SINE Alu 28 311 0 294 234 132 66 chr11 131636985 131637152 -17146320 - L1MB2 LINE L1 -163 6008 5831 682 270 50 9 chr11 131637552 131637774 -17145698 - MIR SINE MIR -10 252 22 513 286 96 0 chr11 131637788 131637966 -17145506 + MER117 DNA MER1_type 3 197 0 258 193 0 0 chr11 131638311 131638368 -17145104 + CT-rich Low_complexity Low_complexity 4 60 0 1172 175 18 5 chr11 131638373 131638596 -17144876 - AluJb SINE Alu -1 311 86 196 328 155 30 chr11 131638596 131638867 -17144605 + L2 LINE L2 2644 2948 -366 288 342 108 0 chr11 131638959 131639070 -17144402 + L2 LINE L2 3150 3272 0 771 195 0 0 chr11 131639140 131639263 -17144209 + FLAM_C SINE Alu 1 123 -10 1607 159 3 31 chr11 131639281 131639571 -17143901 + AluJo SINE Alu 1 282 -30 450 0 0 0 chr11 131639594 131639644 -17143828 + (TG)n Simple_repeat Simple_repeat 1 50 0 1064 156 0 11 chr11 131640457 131640636 -17142836 - AluJb SINE Alu 0 312 136 2251 198 97 12 chr11 131642866 131643362 -17140110 - MLT1F LTR MaLR -2 540 3 445 284 83 12 chr11 131643437 131643606 -17139866 + MIR SINE MIR 12 192 -70 350 245 7 110 chr11 131644668 131644823 -17138649 - L2 LINE L2 -218 3054 2916 238 302 0 10 chr11 131645465 131645561 -17137911 + GA-rich Low_complexity Low_complexity 1 95 0 688 274 99 9 chr11 131646977 131647200 -17136272 - MIR SINE MIR -17 245 3 585 323 144 9 chr11 131648310 131648657 -17134815 + L2 LINE L2 2911 3304 -9 311 277 109 17 chr11 131648819 131648938 -17134534 + L1ME LINE L1 5708 5837 -284 2382 71 0 3 chr11 131649431 131649739 -17133733 + AluY SINE Alu 1 307 -4 23 33 0 0 chr11 131649861 131649891 -17133581 + AT_rich Low_complexity Low_complexity 1 30 0 310 279 15 29 chr11 131649980 131650116 -17133356 + GA-rich Low_complexity Low_complexity 4 137 0 188 257 257 20 chr11 131650192 131650293 -17133179 - L2 LINE L2 -7 3265 3141 673 308 46 17 chr11 131651529 131651766 -17131706 + MIR SINE MIR 8 251 -11 2456 66 0 3 chr11 131653134 131653439 -17130033 - AluSc SINE Alu -5 304 1 260 282 0 24 chr11 131653439 131653515 -17129957 + L2 LINE L2 2989 3064 -208 195 280 20 0 chr11 131653774 131653824 -17129648 + L2 LINE L2 3171 3221 -51 505 182 20 9 chr11 131654131 131654244 -17129228 - L1MB1 LINE L1 -374 5794 5695 * 1792 191 13 24 chr11 131654231 131654613 -17128859 + L1MB1 LINE L1 5790 6167 -1 299 309 70 56 chr11 131654708 131654966 -17128506 + MIR SINE MIR 1 262 0 1009 266 153 40 chr11 131655105 131655557 -17127915 - MLT1J LTR MaLR -4 507 5 539 295 20 0 chr11 131656014 131656163 -17127309 - MIR SINE MIR -108 154 3 1005 342 70 25 chr11 131656583 131657500 -17125972 + L2 LINE L2 1568 2525 -789 1432 262 154 34 chr11 131657649 131658642 -17124830 - L2 LINE L2 0 3313 2242 296 225 11 22 chr11 131659066 131659155 -17124317 + L2 LINE L2 3158 3245 -68 435 335 163 29 chr11 131659358 131659770 -17123702 + L2 LINE L2 2804 3270 -2 301 261 14 0 chr11 131662805 131662874 -17120598 + L2 LINE L2 3244 3313 0 452 0 0 33 chr11 131665543 131665604 -17117868 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 2187 95 7 3 chr11 131665604 131665888 -17117584 - AluSp SINE Alu -28 285 1 1908 163 39 11 chr11 131666007 131666362 -17117110 - MLT1A1 LTR MaLR 0 365 1 469 287 39 55 chr11 131667779 131667960 -17115512 - MIR SINE MIR -71 191 14 270 321 103 52 chr11 131668308 131668754 -17114718 - L1MC4a LINE L1 -1834 5974 5506 320 259 153 44 chr11 131668863 131669047 -17114425 - L1MC4a LINE L1 -758 5388 5225 207 0 0 0 chr11 131669047 131669070 -17114402 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 320 259 153 44 chr11 131669070 131669298 -17114174 - L1MC4a LINE L1 -921 5225 4931 435 296 161 34 chr11 131669980 131670874 -17112598 - L1MC4a LINE L1 -1334 4812 3805 1010 263 169 15 chr11 131671134 131671677 -17111795 + L2 LINE L2 2046 2672 -642 342 296 116 26 chr11 131671693 131671862 -17111610 + L2 LINE L2 2843 3040 -273 1839 131 51 4 chr11 131671862 131672137 -17111335 + AluJo SINE Alu 19 306 -6 342 296 116 26 chr11 131672137 131672200 -17111272 + L2 LINE L2 3040 3096 -217 237 218 115 0 chr11 131672205 131672292 -17111180 + LTR33 LTR ERVL 257 353 -168 612 253 47 21 chr11 131672325 131672515 -17110957 + L2 LINE L2 3118 3312 -1 302 256 41 0 chr11 131672646 131672740 -17110732 - MIR SINE MIR -71 137 52 1011 296 60 26 chr11 131672984 131673481 -17109991 + LTR33 LTR ERVL 3 516 -5 255 382 37 16 chr11 131674383 131674574 -17108898 - MIR SINE MIR -34 228 34 220 337 10 20 chr11 131675593 131675694 -17107778 + MIR3 SINE MIR 109 208 0 226 299 31 0 chr11 131675741 131675838 -17107634 - MIR SINE MIR -62 146 47 401 260 73 24 chr11 131676057 131676180 -17107292 + L2 LINE L2 3183 3311 -2 876 242 103 56 chr11 131678702 131679098 -17104374 + LTR16A1 LTR ERVL 13 427 -30 350 248 185 6 chr11 131679946 131680103 -17103369 + MIR SINE MIR 78 262 0 726 259 78 5 chr11 131680277 131680470 -17103002 - MIR SINE MIR -2 260 54 235 173 13 67 chr11 131681031 131681106 -17102366 + MIR SINE MIR 83 153 -55 2071 145 0 13 chr11 131681220 131681523 -17101949 - AluSx SINE Alu -13 299 1 600 193 17 85 chr11 131682650 131682826 -17100646 - MER5B DNA MER1_type -10 168 5 574 226 146 35 chr11 131683169 131683368 -17100104 - L1MD2 LINE L1 -10 7985 6172 197 332 117 57 chr11 131683369 131683408 -17100064 - L2 LINE L2 0 3272 3237 458 273 5 93 chr11 131683408 131683613 -17099859 + MER5A DNA MER1_type 2 188 -1 197 332 117 57 chr11 131683613 131683838 -17099634 - L2 LINE L2 -35 3237 2992 254 220 34 0 chr11 131683981 131684040 -17099432 - MER5B DNA MER1_type -117 61 1 231 160 0 40 chr11 131684090 131684140 -17099332 + L2 LINE L2 3261 3308 -5 207 295 92 69 chr11 131684931 131685104 -17098368 + MER5A DNA MER1_type 10 186 -3 233 272 62 0 chr11 131685273 131685354 -17098118 + MIR SINE MIR 103 188 -74 1944 66 12 0 chr11 131686520 131686778 -17096694 + L1PA8 LINE L1 5911 6171 -1 276 346 30 0 chr11 131688059 131688160 -17095312 - MIR SINE MIR -78 184 81 180 111 0 0 chr11 131688661 131688688 -17094784 + (TGG)n Simple_repeat Simple_repeat 2 28 0 345 338 18 18 chr11 131689043 131689271 -17094201 + L2 LINE L2 2944 3171 -101 562 274 107 47 chr11 131689395 131689629 -17093843 - MIR SINE MIR 0 262 15 2442 142 102 83 chr11 131689632 131689691 -17093781 - MLT2B3 LTR ERVL -2 552 496 2637 82 3 3 chr11 131689691 131690045 -17093427 - THE1A LTR MaLR -1 354 1 2442 142 102 83 chr11 131690045 131690527 -17092945 - MLT2B3 LTR ERVL -58 496 1 871 277 95 36 chr11 131691599 131692041 -17091431 + LTR33 LTR ERVL 1 519 -2 187 349 130 38 chr11 131693729 131694044 -17089428 - L2 LINE L2 -5 3267 2924 320 378 57 10 chr11 131694106 131694315 -17089157 - L2 LINE L2 -495 2819 2601 208 234 0 65 chr11 131695228 131695305 -17088167 + G-rich Low_complexity Low_complexity 3 74 0 296 97 42 28 chr11 131698523 131698595 -17084877 + (TAGA)n Simple_repeat Simple_repeat 1 73 0 262 316 52 17 chr11 131698629 131698803 -17084669 - L1MD2 LINE L1 -1921 5887 5708 699 159 8 30 chr11 131699571 131699703 -17083769 + FLAM_C SINE Alu 5 133 -10 560 244 214 10 chr11 131699945 131700146 -17083326 + MIR SINE MIR 19 260 -2 1142 246 92 42 chr11 131700317 131700772 -17082700 + MLT1H LTR MaLR 72 549 0 764 246 59 34 chr11 131701660 131701896 -17081576 - MIR SINE MIR -15 247 6 1407 140 36 72 chr11 131702005 131702095 -17081377 + AluJo SINE Alu 21 113 -199 2589 101 3 6 chr11 131702095 131702460 -17081012 - THE1B LTR MaLR 0 364 1 1407 140 36 72 chr11 131702460 131702648 -17080824 + AluJo SINE Alu 113 289 -23 1045 112 0 37 chr11 131702656 131702817 -17080655 + AluSg/x SINE Alu 155 309 0 411 321 67 0 chr11 131702894 131703028 -17080444 + L3 LINE CR1 243 385 -1192 771 286 44 4 chr11 131703233 131703460 -17080012 + MLT1L LTR MaLR 380 615 0 382 289 50 8 chr11 131703460 131703581 -17079891 + L3 LINE CR1 406 531 -1046 322 295 16 16 chr11 131704283 131704405 -17079067 + L3 LINE CR1 668 789 -788 1042 178 0 22 chr11 131704464 131704649 -17078823 + AluJo SINE Alu 87 267 -45 348 245 49 0 chr11 131704672 131704774 -17078698 + L3 LINE CR1 934 1040 -537 321 264 7 90 chr11 131704793 131704948 -17078524 + L3 LINE CR1 1256 1397 -180 273 301 289 0 chr11 131704998 131705154 -17078318 + MIR SINE MIR 47 247 -15 408 286 54 30 chr11 131705176 131705344 -17078128 + L3 LINE CR1 1401 1572 -5 398 228 134 1 chr11 131706398 131706541 -17076931 - MIR SINE MIR -60 148 4 4301 264 115 13 chr11 131708760 131710466 -17073006 + L2 LINE L2 444 2323 -991 238 308 115 0 chr11 131711098 131711202 -17072270 + MLT1J LTR MaLR 287 402 -109 209 317 0 0 chr11 131711692 131711752 -17071720 + L2 LINE L2 3207 3266 -6 225 143 24 0 chr11 131712575 131712617 -17070855 - Charlie8 DNA MER1_type -1000 1417 1375 462 306 91 41 chr11 131712672 131712992 -17070480 - LTR16C LTR ERVL 0 491 156 754 209 0 0 chr11 131713503 131713637 -17069835 - FRAM SINE Alu -17 159 26 4951 320 70 47 chr11 131713692 131713840 -17069632 - HERVL LTR ERVL -314 5340 5197 1926 100 0 12 chr11 131713840 131714110 -17069362 - AluSc SINE Alu 0 309 37 4951 320 70 47 chr11 131714110 131717446 -17066026 - HERVL LTR ERVL -457 5197 1727 689 322 52 26 chr11 131717614 131717829 -17065643 - HERVL LTR ERVL -3551 1445 1214 1577 194 132 28 chr11 131717829 131718252 -17065220 - MLT1C LTR MaLR 0 467 1 689 322 52 26 chr11 131718252 131718421 -17065051 - HERVL LTR ERVL -3782 1214 1051 335 201 316 54 chr11 131719337 131719585 -17063887 - Charlie8 DNA MER1_type -2137 280 1 530 308 83 61 chr11 131721161 131721772 -17061700 + L2 LINE L2 2650 3272 0 314 234 31 0 chr11 131722764 131722828 -17060644 - L2 LINE L2 0 3272 3207 980 274 54 0 chr11 131723876 131724117 -17059355 - MIR SINE MIR 0 262 9 647 313 94 0 chr11 131724296 131724520 -17058952 + MIR SINE MIR 1 245 -17 606 252 53 7 chr11 131725220 131725371 -17058101 + MIR SINE MIR 28 185 -77 290 191 11 56 chr11 131725371 131725460 -17058012 + CT-rich Low_complexity Low_complexity 2 86 0 1574 86 14 5 chr11 131725568 131725788 -17057684 + HERVK LTR ERVK 7017 7238 -5 4995 151 20 5 chr11 131725791 131726590 -17056882 + LTR5 LTR ERVK 1 811 -158 263 179 26 39 chr11 131726690 131726768 -17056704 + CT-rich Low_complexity Low_complexity 3 79 0 301 164 11 66 chr11 131726784 131726967 -17056505 + CT-rich Low_complexity Low_complexity 1 173 0 306 266 184 0 chr11 131727197 131727306 -17056166 - MIR SINE MIR -62 146 18 397 244 126 30 chr11 131727719 131727854 -17055618 - MIR SINE MIR -95 167 20 734 260 89 83 chr11 131728081 131728553 -17054919 + MLT1H1 LTR MaLR 39 511 -44 297 341 40 16 chr11 131728766 131728892 -17054580 + MIR3 SINE MIR 48 176 -32 332 276 88 0 chr11 131730180 131730293 -17053179 - MIR SINE MIR -65 143 46 603 286 55 0 chr11 131731266 131731448 -17052024 + MIR SINE MIR 71 262 0 213 260 0 0 chr11 131731598 131731648 -17051824 - L2 LINE L2 -71 3242 3193 439 276 60 0 chr11 131731956 131732090 -17051382 + MER5B DNA MER1_type 1 142 -36 184 366 42 0 chr11 131732179 131732250 -17051222 + MIR SINE MIR 118 191 -71 645 153 0 0 chr11 131733106 131733230 -17050242 + G-rich Low_complexity Low_complexity 3 126 0 345 241 19 28 chr11 131733241 131733349 -17050123 - MER112 DNA MER1_type -118 142 36 2350 102 0 3 chr11 131733659 131733962 -17049510 - AluSg SINE Alu -8 302 1 358 318 89 77 chr11 131735032 131735369 -17048103 - L2 LINE L2 -5 3267 2927 461 265 133 0 chr11 131735403 131735554 -17047918 - MIR SINE MIR 0 262 92 189 147 0 0 chr11 131735582 131735616 -17047856 + (TTA)n Simple_repeat Simple_repeat 1 34 0 185 361 16 0 chr11 131735684 131735745 -17047727 - MIR SINE MIR -170 92 31 375 287 43 53 chr11 131735859 131736068 -17047404 - L2 LINE L2 -557 2757 2551 631 297 43 11 chr11 131737306 131737491 -17045981 - MER91A DNA MER1_type -3 193 3 21 36 0 0 chr11 131737585 131737613 -17045859 + AT_rich Low_complexity Low_complexity 1 28 0 293 279 28 14 chr11 131737787 131737910 -17045562 - MIR SINE MIR -107 101 16 435 163 1 3 chr11 131737977 131738053 -17045419 + MLT1H LTR MaLR 34 151 -398 361 259 177 32 chr11 131738246 131738467 -17045005 + MLT1H LTR MaLR 108 359 -196 2508 66 0 3 chr11 131740161 131740465 -17043007 + AluY SINE Alu 1 303 -8 24 0 0 0 chr11 131740521 131740545 -17042927 + AT_rich Low_complexity Low_complexity 1 24 0 487 274 25 66 chr11 131740707 131740904 -17042568 + HAL1 LINE L1 1 189 -2318 1497 286 83 56 chr11 131741112 131742051 -17041421 + L1MC4a LINE L1 412 1324 -5218 1232 193 8 21 chr11 131742051 131742290 -17041182 - MER8 DNA MER2_type -2 237 2 1497 286 83 56 chr11 131742290 131742790 -17040682 + L1MC4a LINE L1 1324 1791 -4751 1880 123 0 63 chr11 131742790 131743110 -17040362 - AluSx SINE Alu 0 301 1 1497 286 83 56 chr11 131743110 131743185 -17040287 + L1MC4a LINE L1 1791 1862 -4680 2114 141 3 3 chr11 131743262 131743560 -17039912 + AluSx SINE Alu 1 298 -14 180 0 0 0 chr11 131743624 131743644 -17039828 + (CTA)n Simple_repeat Simple_repeat 1 20 0 496 304 76 55 chr11 131743670 131743940 -17039532 + L1MC4a LINE L1 2204 2523 -4054 1615 200 144 72 chr11 131743940 131744495 -17038977 + MLT1G1 LTR MaLR 1 595 0 496 304 76 55 chr11 131744495 131744605 -17038867 + L1MC4a LINE L1 2523 2629 -3948 842 119 13 53 chr11 131744639 131744790 -17038682 + AluSg/x SINE Alu 168 312 0 2525 154 0 28 chr11 131744943 131745379 -17038093 - Tigger2a DNA MER2_type 0 434 11 1304 306 69 20 chr11 131745387 131746034 -17037438 + L1MC4a LINE L1 2838 3555 -2985 1707 194 17 0 chr11 131746034 131746328 -17037144 + AluJo SINE Alu 1 299 -13 1304 306 69 20 chr11 131746328 131746697 -17036775 + L1MC4a LINE L1 3555 3904 -2636 461 178 271 8 chr11 131746809 131746927 -17036545 - MER5A DNA MER1_type 0 189 41 470 335 87 9 chr11 131746930 131747392 -17036080 + L1MC4a LINE L1 5662 6159 -397 369 264 112 74 chr11 131747394 131747652 -17035820 + L1MC4a LINE L1 6187 6454 -1748 1451 89 110 8 chr11 131747709 131747946 -17035526 + L1PA13 LINE L1 5903 6163 0 33 25 0 0 chr11 131748074 131748114 -17035358 + AT_rich Low_complexity Low_complexity 1 40 0 483 249 81 87 chr11 131748488 131748994 -17034478 + HAL1 LINE L1 701 1203 -1304 859 278 86 43 chr11 131749025 131749562 -17033910 + HAL1 LINE L1 1404 1963 -544 643 263 70 32 chr11 131749738 131750023 -17033449 + HAL1 LINE L1 2186 2481 -26 228 365 19 0 chr11 131750054 131750161 -17033311 - L2 LINE L2 -498 2816 2708 198 0 0 0 chr11 131750438 131750460 -17033012 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 877 332 64 30 chr11 131750526 131750966 -17032506 - L3 LINE CR1 -548 1029 575 451 184 11 0 chr11 131751008 131751095 -17032377 + MER117 DNA MER1_type 50 137 -60 683 336 45 14 chr11 131751137 131751429 -17032043 - L3 LINE CR1 -982 595 295 508 268 196 12 chr11 131751620 131751941 -17031531 - L1ME4a LINE L1 -11 6110 5731 241 178 22 0 chr11 131752000 131752045 -17031427 - L2 LINE L2 -36 3236 3191 448 290 19 45 chr11 131752200 131752355 -17031117 + MIR SINE MIR 38 188 -74 306 115 0 0 chr11 131752661 131752713 -17030759 + (CA)n Simple_repeat Simple_repeat 2 53 0 418 242 52 72 chr11 131752752 131752905 -17030567 - MIR SINE MIR -52 210 61 211 345 69 0 chr11 131753734 131753821 -17029651 + MIR SINE MIR 47 139 -123 307 301 19 19 chr11 131754774 131754877 -17028595 - MIR SINE MIR -63 145 43 516 150 0 0 chr11 131755686 131755766 -17027706 - MADE1 DNA Mariner 0 80 1 1220 231 46 173 chr11 131755923 131756120 -17027352 - L2 LINE L2 0 3313 3093 2264 140 119 8 chr11 131756120 131756505 -17026967 + MSTA LTR MaLR 1 428 0 1220 231 46 173 chr11 131756505 131757495 -17025977 - L2 LINE L2 -220 3093 2263 30 27 0 0 chr11 131757496 131757533 -17025939 + AT_rich Low_complexity Low_complexity 1 37 0 904 82 47 0 chr11 131757584 131757754 -17025718 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 234 239 15 15 chr11 131758443 131758510 -17024962 + LTR67 LTR ERVL 451 517 -40 2315 98 0 3 chr11 131758511 131758817 -17024655 - AluSq SINE Alu -8 305 1 266 295 166 22 chr11 131758849 131758988 -17024484 + MIR SINE MIR 86 244 -18 302 149 32 106 chr11 131760300 131760394 -17023078 + MIR SINE MIR 126 212 -50 295 296 88 44 chr11 131760472 131760568 -17022904 + MIR SINE MIR 47 154 -108 1830 195 5 29 chr11 131760568 131760942 -17022530 + MLT1A1 LTR MaLR 1 365 0 295 296 88 44 chr11 131760942 131761004 -17022468 + MIR SINE MIR 154 212 -50 1933 165 73 28 chr11 131761465 131761820 -17021652 - L1PB4 LINE L1 -1 6155 5776 429 20 0 0 chr11 131761820 131761870 -17021602 + (CA)n Simple_repeat Simple_repeat 2 51 0 1933 165 73 28 chr11 131761870 131761939 -17021533 - L1PB4 LINE L1 -380 5776 5712 1921 153 0 43 chr11 131762008 131762334 -17021138 + AluJb SINE Alu 1 312 0 366 289 126 0 chr11 131763565 131763700 -17019772 - MIR SINE MIR -48 214 63 385 267 54 7 chr11 131763707 131763852 -17019620 + MER5A DNA MER1_type 23 166 -12 874 245 34 60 chr11 131764792 131765061 -17018411 + MIR SINE MIR 1 262 0 1517 179 135 6 chr11 131765187 131765505 -17017967 - MLT1A1 LTR MaLR 0 365 7 217 304 123 65 chr11 131765679 131766133 -17017339 - L2 LINE L2 -259 3054 2571 237 325 53 13 chr11 131766617 131766728 -17016744 - MIR SINE MIR -62 146 41 180 111 0 0 chr11 131767702 131767729 -17015743 + (CTCA)n Simple_repeat Simple_repeat 1 27 0 420 277 85 0 chr11 131767747 131767841 -17015631 - L2 LINE L2 -21 3251 3150 261 284 61 43 chr11 131768214 131768436 -17015036 + MIR SINE MIR 18 241 -21 255 320 27 4 chr11 131768409 131768584 -17014888 - MIR SINE MIR 0 262 29 * 189 360 24 48 chr11 131769538 131769663 -17013809 + MIR3 SINE MIR 8 129 -79 212 405 33 8 chr11 131769793 131769914 -17013558 + L3b LINE CR1 1377 1500 -83 368 153 68 93 chr11 131770803 131770921 -17012551 + MIR SINE MIR 43 157 -105 456 347 9 27 chr11 131773132 131773351 -17010121 - MIR SINE MIR -2 260 46 219 143 29 14 chr11 131773385 131773455 -17010017 + CT-rich Low_complexity Low_complexity 1 71 0 375 258 8 62 chr11 131773607 131773735 -17009737 + MER5B DNA MER1_type 38 158 -20 2586 133 9 21 chr11 131774693 131775130 -17008342 - Tigger2a DNA MER2_type -2 432 1 1670 173 42 24 chr11 131775374 131775663 -17007809 + AluJo SINE Alu 1 294 -18 224 305 212 0 chr11 131775881 131775999 -17007473 + MIR SINE MIR 16 158 -104 235 317 89 0 chr11 131776126 131776227 -17007245 + MIR SINE MIR 47 156 -106 3292 139 77 9 chr11 131776441 131777023 -17006449 - LTR26E LTR ERV1 0 622 1 384 256 73 29 chr11 131778584 131778721 -17004751 + MIR SINE MIR 114 256 -6 446 274 0 18 chr11 131778928 131779041 -17004431 + L2 LINE L2 3160 3270 -2 283 308 39 0 chr11 131780081 131780185 -17003287 + L2 LINE L2 3136 3243 -29 451 283 35 25 chr11 131783345 131783545 -16999927 + MIR SINE MIR 42 243 -19 189 178 89 0 chr11 131784177 131784222 -16999250 + L2 LINE L2 3246 3294 -19 479 130 0 13 chr11 131784223 131784300 -16999172 + AluSg/x SINE Alu 219 294 -16 754 177 44 61 chr11 131785684 131785865 -16997607 + MER5B DNA MER1_type 1 178 0 290 262 39 39 chr11 131786110 131786213 -16997259 - MIR3 SINE MIR -20 188 86 338 321 43 31 chr11 131786417 131786579 -16996893 + MIR SINE MIR 48 211 -51 2028 145 126 3 chr11 131786759 131787139 -16996333 - MSTA LTR MaLR -1 427 1 2344 113 3 0 chr11 131787325 131787634 -16995838 - AluSq SINE Alu -3 310 1 286 239 214 17 chr11 131787665 131787782 -16995690 - L2 LINE L2 -6 3307 3168 1889 165 6 55 chr11 131787811 131788175 -16995297 + MLT1A1 LTR MaLR 17 362 -3 2931 169 14 26 chr11 131788179 131788747 -16994725 + MLT1A1-int LTR MaLR 2 562 -1173 1612 214 65 25 chr11 131788752 131789149 -16994323 + LTR40a LTR ERVL 107 519 0 385 321 71 0 chr11 131791481 131791621 -16991851 - L2 LINE L2 -16 3297 3148 862 124 0 8 chr11 131791722 131791851 -16991621 + FLAM_C SINE Alu 2 129 -4 374 330 84 43 chr11 131792025 131792371 -16991101 - L2 LINE L2 -639 2675 2316 1798 199 31 81 chr11 131792426 131793005 -16990467 - L1ME1 LINE L1 -4 6162 5613 1400 254 95 73 chr11 131793026 131793724 -16989748 - MER21B LTR ERV1 -150 713 1 401 274 62 9 chr11 131794097 131794210 -16989262 - MLT1K LTR MaLR -329 259 141 331 232 121 20 chr11 131794341 131794440 -16989032 - MIR SINE MIR -50 212 104 275 286 186 35 chr11 131794571 131794661 -16988811 - L2 LINE L2 -80 3233 3158 2076 136 123 8 chr11 131794661 131795043 -16988429 - MSTB LTR MaLR 0 426 1 275 286 186 35 chr11 131795043 131795151 -16988321 - L2 LINE L2 -155 3158 3005 915 254 54 76 chr11 131796151 131796187 -16987285 - MER39 LTR ERV1 -2 662 627 2010 118 56 31 chr11 131796187 131796542 -16986930 + THE1B LTR MaLR 1 364 0 915 254 54 76 chr11 131796542 131797047 -16986425 - MER39 LTR ERV1 -37 627 6 262 363 42 55 chr11 131797070 131797379 -16986093 + L2 LINE L2 2966 3270 -2 842 155 14 14 chr11 131798869 131799017 -16984455 + BC200 scRNA scRNA 10 157 -43 364 366 28 5 chr11 131799703 131799919 -16983553 + L3 LINE CR1 1155 1375 -202 445 244 113 19 chr11 131801377 131801537 -16981935 + MER96 DNA MER1_type 1 175 0 255 345 81 0 chr11 131801591 131801739 -16981733 - MIR SINE MIR -62 200 41 805 277 66 11 chr11 131803337 131803608 -16979864 - L3b LINE CR1 -192 1391 1106 243 287 0 70 chr11 131803705 131803759 -16979713 - MIR SINE MIR -105 157 114 917 169 30 82 chr11 131803759 131803990 -16979482 - MER20 DNA MER1_type 0 219 1 243 287 0 70 chr11 131803990 131804050 -16979422 - MIR SINE MIR -148 114 51 193 263 0 0 chr11 131805055 131805112 -16978360 - L2 LINE L2 0 3313 3257 255 222 0 0 chr11 131805125 131805170 -16978302 + L2 LINE L2 3237 3281 -32 180 304 71 18 chr11 131805377 131805489 -16977983 + L2 LINE L2 3158 3275 -38 423 290 0 0 chr11 131805517 131805624 -16977848 - MIR SINE MIR 0 262 156 595 281 28 46 chr11 131805728 131805945 -16977527 + MIR SINE MIR 16 228 -34 195 129 0 0 chr11 131805975 131806006 -16977466 + (TTG)n Simple_repeat Simple_repeat 3 33 0 436 181 127 7 chr11 131807371 131807513 -16975959 - MIR SINE MIR -61 147 34 3075 195 31 58 chr11 131808506 131809336 -16974136 + L1ME1 LINE L1 5351 6158 -8 258 32 0 0 chr11 131809481 131809512 -16973960 + (CA)n Simple_repeat Simple_repeat 2 32 0 842 233 40 92 chr11 131809953 131810279 -16973193 - MER102b DNA MER1_type -2 339 31 345 305 29 0 chr11 131810357 131810462 -16973010 - L3 LINE CR1 -34 1543 1436 310 332 45 58 chr11 131810480 131810703 -16972769 + L2 LINE L2 2965 3184 -88 266 297 143 24 chr11 131810745 131810954 -16972518 - MLT1K LTR MaLR -15 573 340 374 298 46 7 chr11 131810976 131811127 -16972345 - MIR SINE MIR -101 161 5 551 77 13 0 chr11 131811210 131811288 -16972184 + MADE1 DNA Mariner 1 79 -1 885 290 134 26 chr11 131812387 131812894 -16970578 - MLT1K LTR MaLR -17 571 10 1738 161 20 33 chr11 131813526 131813830 -16969642 + AluJo SINE Alu 1 300 -12 740 255 4 75 chr11 131813879 131814157 -16969315 - LTR16A1 LTR ERVL -3 454 197 4218 164 121 60 chr11 131814266 131815585 -16967887 + pTR5 LTR ERV1 742 2438 0 517 254 85 15 chr11 131816490 131816691 -16966781 - MIR SINE MIR -47 215 1 269 284 63 0 chr11 131816992 131817087 -16966385 - MER96 DNA MER1_type? -74 101 1 2143 113 36 70 chr11 131818381 131818769 -16964703 - THE1C LTR MaLR 0 375 1 23 0 0 0 chr11 131819501 131819524 -16963948 + AT_rich Low_complexity Low_complexity 1 23 0 828 193 47 6 chr11 131819781 131819952 -16963520 + MIR SINE MIR 50 227 -35 180 250 28 69 chr11 131821032 131821104 -16962368 + L2 LINE L2 3156 3224 -89 186 43 0 0 chr11 131821461 131821484 -16961988 + (CACCC)n Simple_repeat Simple_repeat 4 26 0 2238 78 7 7 chr11 131821934 131822218 -16961254 + AluY SINE Alu 23 306 -5 229 296 160 30 chr11 131822707 131822876 -16960596 - MIR3 SINE MIR -11 197 7 302 279 97 45 chr11 131823041 131823195 -16960277 + L2 LINE L2 3101 3262 -10 247 323 108 8 chr11 131824388 131824540 -16958932 - MIR SINE MIR -60 148 10 1000 261 90 47 chr11 131824820 131825447 -16958025 - L1MC4 LINE L1 -20 8022 7292 1593 189 145 43 chr11 131825453 131825945 -16957527 + MLT1F1 LTR MaLR 1 548 -19 648 180 31 16 chr11 131825947 131826074 -16957398 + MLT1A2 LTR MaLR 2 130 -244 2195 170 30 7 chr11 131826074 131826479 -16956993 + MSTB1 LTR MaLR 1 414 -18 405 0 0 0 chr11 131826503 131826548 -16956924 + (TC)n Simple_repeat Simple_repeat 2 46 0 879 193 17 6 chr11 131826552 131826728 -16956744 + MLT1A2 LTR MaLR 193 370 -4 650 300 58 18 chr11 131826759 131827218 -16956254 - L1MC4 LINE L1 -584 7458 6977 372 195 57 57 chr11 131827224 131827383 -16956089 - L1MC4 LINE L1 -934 7108 6950 2095 145 35 46 chr11 131829140 131829534 -16953938 + MLT1B LTR MaLR 1 390 0 4999 160 22 11 chr11 131829623 131830997 -16952475 + L1MB8 LINE L1 4780 6177 -1 823 162 7 7 chr11 131830990 131831138 -16952334 + L1MC2 LINE L1 1 148 -6392 * 2443 172 29 10 chr11 131831139 131831557 -16951915 - MSTB LTR MaLR 0 426 1 8631 180 22 4 chr11 131831571 131833179 -16950293 - MSTB-int LTR MaLR -14 1637 2 2689 146 17 9 chr11 131833183 131833602 -16949870 - MSTB LTR MaLR -4 422 1 6187 185 100 41 chr11 131833618 131835509 -16947963 + L1MC2 LINE L1 156 2255 -4285 3594 244 38 72 chr11 131835512 131835836 -16947636 + L1MC2 LINE L1 3039 3373 -3167 1577 169 4 0 chr11 131835836 131836078 -16947394 - AluJb SINE Alu -69 243 1 3594 244 38 72 chr11 131836078 131836790 -16946682 + L1MC2 LINE L1 3373 4013 -2527 2456 109 0 0 chr11 131836790 131837102 -16946370 - AluSx SINE Alu 0 312 1 3594 244 38 72 chr11 131837102 131837530 -16945942 + L1MC2 LINE L1 4013 4454 -2086 1911 166 80 77 chr11 131837560 131839427 -16944045 + L1MC2 LINE L1 4758 6716 -22 2337 111 0 0 chr11 131839427 131839725 -16943747 - AluSx SINE Alu -14 298 1 1911 166 80 77 chr11 131839725 131839748 -16943724 + L1MC2 LINE L1 6716 6737 -1 195 148 33 16 chr11 131839837 131839898 -16943574 + (TA)n Simple_repeat Simple_repeat 2 63 0 219 114 0 0 chr11 131839899 131839934 -16943538 + (GA)n Simple_repeat Simple_repeat 2 36 0 668 240 134 60 chr11 131840182 131840548 -16942924 - MLT1J1 LTR MaLR -2 444 52 539 287 138 15 chr11 131841253 131841672 -16941800 - MLT1J LTR MaLR -16 495 1 386 178 122 9 chr11 131841765 131841872 -16941600 - Charlie7 DNA MER1_type -2455 157 39 558 292 133 26 chr11 131841882 131842228 -16941244 - L2 LINE L2 -1053 2261 1879 228 241 149 11 chr11 131842516 131842603 -16940869 - L2 LINE L2 -849 2465 2367 221 313 83 0 chr11 131843881 131843977 -16939495 - L2 LINE L2 -254 3018 2915 341 331 82 16 chr11 131844023 131844207 -16939265 - L2 LINE L2 -424 2890 2695 222 276 26 0 chr11 131845039 131845115 -16938357 + MIR3 SINE MIR 110 187 -21 297 254 15 0 chr11 131845789 131845856 -16937616 - MIR SINE MIR -111 151 84 332 341 100 27 chr11 131845892 131846153 -16937319 - L2 LINE L2 -1 3271 2992 2739 166 114 30 chr11 131847678 131847945 -16935527 - MER67C LTR ERV1 0 710 467 605 289 117 39 chr11 131847945 131848356 -16935116 - MER65A LTR ERV1 -2 443 1 2739 166 114 30 chr11 131848356 131848743 -16934729 - MER67C LTR ERV1 -243 467 1 399 268 134 0 chr11 131848805 131848947 -16934525 + MIR SINE MIR 47 207 -55 1854 132 0 72 chr11 131849007 131849325 -16934147 + AluJb SINE Alu 1 295 -17 248 326 70 0 chr11 131851553 131851639 -16931833 + L2 LINE L2 3184 3275 -38 241 272 11 33 chr11 131852373 131852465 -16931007 + MIR SINE MIR 42 131 -77 786 214 21 21 chr11 131852741 131852928 -16930544 + MLT1A2 LTR MaLR 1 187 -187 1275 259 78 40 chr11 131852967 131853466 -16930006 - MER21B LTR ERV1 -111 752 235 401 181 14 0 chr11 131853466 131853538 -16929934 - MER21B LTR ERV1 -748 115 43 399 252 43 17 chr11 131854694 131854835 -16928637 + MIR SINE MIR 23 164 -63 219 400 56 0 chr11 131854931 131855056 -16928416 - L3b LINE CR1 -114 1469 1338 320 315 47 13 chr11 131857085 131857234 -16926238 - MER5A DNA MER1_type 0 189 36 * 388 288 72 14 chr11 131857114 131857253 -16926219 + MER5A DNA MER1_type 43 189 0 180 0 0 0 chr11 131857365 131857385 -16926087 + (A)n Simple_repeat Simple_repeat 1 20 0 1174 223 80 52 chr11 131857564 131858035 -16925437 + MLT1J LTR MaLR 1 505 -6 558 231 35 35 chr11 131858224 131858423 -16925049 - MER97c DNA MER1_type? 0 1090 892 493 228 6 48 chr11 131858458 131858625 -16924847 - MER97b DNA MER1_type? -194 859 700 2498 205 31 82 chr11 131858642 131858816 -16924656 - MER97c DNA MER1_type? -349 741 560 2315 129 0 0 chr11 131858816 131859127 -16924345 + AluSx SINE Alu 1 311 -1 2498 205 31 82 chr11 131859127 131859439 -16924033 - MER97c DNA MER1_type? -530 560 307 1921 160 16 3 chr11 131859439 131859745 -16923727 + AluJb SINE Alu 1 310 -2 2498 205 31 82 chr11 131859745 131860034 -16923438 - MER97c DNA MER1_type? -783 307 5 915 203 96 37 chr11 131861369 131861640 -16921832 - L2 LINE L2 -1 3312 3026 1789 146 10 32 chr11 131862136 131862444 -16921028 - AluJo SINE Alu -11 301 1 2806 245 80 57 chr11 131863566 131864013 -16919459 + L1MC4a LINE L1 5741 6176 -1632 1424 155 6 149 chr11 131864013 131864361 -16919111 - AluSx SINE Alu -14 298 1 2806 245 80 57 chr11 131864361 131865137 -16918335 + L1MC4a LINE L1 6176 6992 -816 576 118 17 8 chr11 131865145 131865264 -16918208 + (TAGA)n Simple_repeat Simple_repeat 1 120 0 339 85 0 0 chr11 131865264 131865311 -16918161 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 225 189 67 78 chr11 131865316 131865406 -16918066 + L1MC4 LINE L1 7074 7162 -880 866 231 75 114 chr11 131865411 131866000 -16917472 + L1MC4 LINE L1 7476 8041 -1 420 261 24 91 chr11 131866067 131866232 -16917240 - MIR SINE MIR -74 188 35 387 0 0 0 chr11 131866329 131866372 -16917100 + (CA)n Simple_repeat Simple_repeat 2 44 0 2001 120 0 34 chr11 131866382 131866674 -16916798 - AluSx SINE Alu -30 282 1 210 276 116 97 chr11 131866700 131866968 -16916504 + L2 LINE L2 2998 3270 -2 906 285 125 11 chr11 131868854 131869440 -16914032 + L2 LINE L2 2669 3312 -1 21 0 0 0 chr11 131875334 131875355 -16908117 + AT_rich Low_complexity Low_complexity 1 21 0 377 288 68 8 chr11 131875980 131876140 -16907332 - MIR SINE MIR -54 208 21 2054 108 3 7 chr11 131876369 131876656 -16906816 + AluSq SINE Alu 1 286 -27 405 39 0 0 chr11 131876656 131876707 -16906765 + (TG)n Simple_repeat Simple_repeat 2 52 0 739 290 19 14 chr11 131877813 131878020 -16905452 - MIR SINE MIR -20 242 35 558 261 12 43 chr11 131878027 131878188 -16905284 + L2 LINE L2 3158 3313 0 183 263 75 38 chr11 131879164 131879244 -16904228 - MIR SINE MIR -63 199 117 1115 215 42 99 chr11 131879437 131879869 -16903603 + MLT2D LTR ERVL 8 414 0 1015 258 154 43 chr11 131880016 131880547 -16902925 - L2 LINE L2 -3 3310 2710 1920 125 14 0 chr11 131880547 131880855 -16902617 - AluY SINE Alu 0 312 1 1015 258 154 43 chr11 131880855 131880883 -16902589 - L2 LINE L2 -603 2710 2687 851 177 0 70 chr11 131880888 131881074 -16902398 + FRAM SINE Alu 4 176 0 455 279 16 8 chr11 131881074 131881203 -16902269 - L2 LINE L2 -616 2698 2569 4346 186 50 24 chr11 131881530 131881839 -16901633 + MER63C DNA MER1_type 1 301 -759 2099 105 6 38 chr11 131881839 131882154 -16901318 + AluSq SINE Alu 1 305 -8 4346 186 50 24 chr11 131882154 131882336 -16901136 + MER63C DNA MER1_type 301 477 -583 2230 114 3 0 chr11 131882336 131882643 -16900829 - AluSx SINE Alu -4 308 1 4346 186 50 24 chr11 131882643 131883055 -16900417 + MER63C DNA MER1_type 477 928 -2 242 263 66 0 chr11 131883099 131883175 -16900297 - MIR3 SINE MIR -38 170 90 238 280 0 23 chr11 131884073 131884171 -16899301 + MIR SINE MIR 62 154 -63 212 364 20 10 chr11 131884533 131884632 -16898840 + MIR SINE MIR 30 129 -79 307 325 61 69 chr11 131885305 131885536 -16897936 - MIR SINE MIR -2 260 32 303 348 13 39 chr11 131885660 131885815 -16897657 + MIR SINE MIR 112 262 0 277 315 74 60 chr11 131887233 131887382 -16896090 + MIR SINE MIR 62 212 -50 628 212 8 8 chr11 131888167 131888285 -16895187 - FLAM_A SINE Alu -18 124 7 4242 170 13 29 chr11 131888319 131888638 -16894834 - L1MB7 LINE L1 -9 6175 5852 1104 168 12 0 chr11 131888638 131888811 -16894661 - FAM SINE Alu 0 175 1 4242 170 13 29 chr11 131888811 131889428 -16894044 - L1MB7 LINE L1 -332 5852 5254 384 262 83 55 chr11 131889654 131889799 -16893673 - MIR SINE MIR -85 177 29 485 319 0 32 chr11 131889841 131889998 -16893474 - L3 LINE CR1 -120 1457 1306 360 278 10 10 chr11 131890925 131891022 -16892450 + MIR SINE MIR 95 191 -71 2315 80 10 0 chr11 131891022 131891323 -16892149 + AluSc SINE Alu 1 304 -5 1550 149 100 6 chr11 131891341 131891670 -16891802 + L1MD1 LINE L1 5883 6242 0 225 94 0 0 chr11 131891899 131891931 -16891541 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 253 304 33 0 chr11 131892583 131892675 -16890797 + L2 LINE L2 2966 3060 -212 368 343 200 7 chr11 131892910 131893190 -16890282 - L1MC4a LINE L1 -1644 6164 5831 462 273 70 0 chr11 131893874 131894017 -16889455 - MIR SINE MIR -13 249 97 326 326 0 0 chr11 131896510 131896602 -16886870 - MIR SINE MIR -138 124 33 228 225 225 12 chr11 131896756 131896836 -16886636 - L2 LINE L2 -30 3242 3146 593 280 37 11 chr11 131897100 131897289 -16886183 - MIR3 SINE MIR -11 197 4 229 286 48 0 chr11 131898158 131898242 -16885230 + CT-rich Low_complexity Low_complexity 1 88 0 210 73 0 98 chr11 131898546 131898587 -16884885 + L2 LINE L2 3027 3063 -209 868 293 4 39 chr11 131900652 131900908 -16882564 - MIR SINE MIR -4 258 12 356 259 176 0 chr11 131901483 131901614 -16881858 - MIR3 SINE MIR -22 186 33 367 310 92 23 chr11 131901815 131901989 -16881483 - MIR3 SINE MIR -11 197 12 258 353 88 0 chr11 131902532 131902668 -16880804 - MIR3 SINE MIR -18 190 43 232 161 0 12 chr11 131902954 131903008 -16880464 - MIR SINE MIR -63 145 93 586 308 111 44 chr11 131906344 131906911 -16876561 + L2 LINE L2 2682 3272 0 258 277 118 67 chr11 131907393 131907512 -16875960 - L2 LINE L2 -6 3307 3183 342 67 0 0 chr11 131908200 131908245 -16875227 + (CA)n Simple_repeat Simple_repeat 1 45 0 248 321 24 0 chr11 131908663 131908747 -16874725 + MER94 DNA DNA 14 99 -35 192 247 41 113 chr11 131909415 131909512 -16873960 - MIR3 SINE MIR -2 206 117 399 21 0 0 chr11 131909973 131910021 -16873451 + (TG)n Simple_repeat Simple_repeat 1 48 0 434 260 16 0 chr11 131910590 131910713 -16872759 + MER94 DNA DNA 8 132 -2 409 310 146 14 chr11 131911168 131911381 -16872091 - MIR SINE MIR -9 253 13 394 316 166 6 chr11 131912273 131912481 -16870991 + MIR SINE MIR 20 260 -2 223 301 24 106 chr11 131913848 131913971 -16869501 + MIR3 SINE MIR 96 208 0 1992 115 51 14 chr11 131914103 131914399 -16869073 - AluSx SINE Alu -5 307 1 375 292 64 121 chr11 131914420 131914810 -16868662 + L2 LINE L2 2905 3272 0 452 175 10 0 chr11 131915026 131915123 -16868349 + (TGGA)n Simple_repeat Simple_repeat 1 98 0 310 309 12 0 chr11 131916477 131916558 -16866914 - L2 LINE L2 -5 3308 3227 240 35 0 0 chr11 131916730 131916759 -16866713 + (CAGCC)n Simple_repeat Simple_repeat 5 33 0 347 359 32 6 chr11 131918409 131918565 -16864907 + MIR SINE MIR 97 256 -6 456 335 130 5 chr11 131919721 131919921 -16863551 - MIR SINE MIR -15 247 23 210 262 179 0 chr11 131920908 131920960 -16862512 + MIR3 SINE MIR 103 169 -39 283 235 37 140 chr11 131920960 131921096 -16862376 - MER5A DNA MER1_type -3 175 1 184 190 86 52 chr11 131921096 131921130 -16862342 + L3 LINE CR1 1523 1558 -19 269 275 38 0 chr11 131921162 131921242 -16862230 + MIR SINE MIR 56 138 -124 235 267 33 0 chr11 131922666 131922726 -16860746 + MIR SINE MIR 88 149 -59 312 314 80 75 chr11 131923184 131923372 -16860100 - MIR3 SINE MIR -15 193 5 1456 128 47 0 chr11 131924031 131924265 -16859207 - Tigger5 DNA MER2_type 0 2323 2079 238 206 254 0 chr11 131924256 131924319 -16859153 - Tigger5 DNA MER2_type -2244 79 1 * 351 113 0 0 chr11 131924662 131924715 -16858757 + (GAA)n Simple_repeat Simple_repeat 2 54 0 208 362 11 11 chr11 131924763 131924857 -16858615 + MIR SINE MIR 50 143 -65 335 103 0 17 chr11 131926004 131926062 -16857410 + (GGA)n Simple_repeat Simple_repeat 2 58 0 416 236 172 40 chr11 131926509 131926683 -16856789 - MIR SINE MIR -16 246 50 457 176 11 58 chr11 131928021 131928209 -16855263 + (TGGA)n Simple_repeat Simple_repeat 1 179 0 220 324 28 0 chr11 131928230 131928301 -16855171 + (TGGA)n Simple_repeat Simple_repeat 1 73 0 258 286 36 12 chr11 131928305 131928389 -16855083 + GA-rich Low_complexity Low_complexity 4 89 0 548 234 205 0 chr11 131928426 131928597 -16854875 + MER63A DNA MER1_type 5 210 0 390 303 63 21 chr11 131928843 131928985 -16854487 - L2 LINE L2 0 3272 3125 426 372 58 31 chr11 131930217 131930440 -16853032 - L3b LINE CR1 -7 1576 1348 2000 118 20 13 chr11 131930562 131930868 -16852604 - AluSx SINE Alu 0 312 5 306 329 157 14 chr11 131931010 131931220 -16852252 + L3b LINE CR1 1320 1559 -24 1809 189 39 41 chr11 131931372 131931832 -16851640 + LTR2B LTR ERV1 32 490 0 1749 183 94 24 chr11 131932099 131932470 -16851002 + MLT2C1 LTR ERVL 1 397 0 524 306 59 14 chr11 131932558 131932777 -16850695 + MIR SINE MIR 34 262 0 255 174 0 0 chr11 131932926 131932972 -16850500 + MIR3 SINE MIR 162 207 -1 691 270 54 42 chr11 131932979 131933220 -16850252 + L3b LINE CR1 1125 1368 -215 184 161 0 0 chr11 131933796 131933827 -16849645 - L2 LINE L2 -20 3293 3263 383 250 181 9 chr11 131933856 131933972 -16849500 - MIR3 SINE MIR -65 143 8 316 281 88 9 chr11 131933962 131934076 -16849396 - MIR SINE MIR -80 182 60 * 822 280 23 19 chr11 131934259 131934520 -16848952 - MIR SINE MIR 0 262 1 289 292 120 108 chr11 131935320 131935570 -16847902 + L2 LINE L2 3012 3264 -8 299 252 30 23 chr11 131936398 131936529 -16846943 - L1MC5 LINE L1 -36 7925 7794 2601 227 29 9 chr11 131936707 131937355 -16846117 - L1ME2 LINE L1 -187 5977 5317 977 164 38 0 chr11 131937359 131937518 -16845954 + AluJb SINE Alu 134 298 -14 596 224 26 0 chr11 131937522 131937674 -16845798 - L1ME2 LINE L1 -816 5330 5175 255 154 0 11 chr11 131937684 131937738 -16845734 + Alu SINE Alu 1 40 -262 12081 91 1 1 chr11 131937738 131939498 -16843974 - L1P LINE L1 -2677 3469 1710 4803 213 32 48 chr11 131939485 131939907 -16843565 - L1ME LINE L1 -587 5648 5221 * 2210 113 0 31 chr11 131939907 131940225 -16843247 + AluSx SINE Alu 1 308 -4 4803 213 32 48 chr11 131940225 131941074 -16842398 - L1ME LINE L1 -1014 5221 4411 1570 206 0 29 chr11 131941074 131941385 -16842087 + AluJo SINE Alu 1 302 -10 4803 213 32 48 chr11 131941385 131941861 -16841611 - L1ME LINE L1 -1824 4411 3929 2434 152 71 18 chr11 131941863 131942311 -16841161 - MLT1D LTR MaLR -3 502 31 1783 134 40 16 chr11 131942345 131942666 -16840806 - L1MB2 LINE L1 -2 6169 5841 3555 121 3 28 chr11 131942683 131943252 -16840220 + L1PB2 LINE L1 5597 6151 0 491 202 0 9 chr11 131943282 131943396 -16840076 - L1ME LINE L1 -2300 3915 3803 1287 225 71 23 chr11 131943475 131943870 -16839602 - MER63B DNA MER1_type -18 418 5 1333 257 37 42 chr11 131943874 131944222 -16839250 - L1ME LINE L1 -2593 3622 3277 1879 169 184 63 chr11 131944222 131944685 -16838787 + LTR53 LTR ERVL 1 519 0 1333 257 37 42 chr11 131944685 131944931 -16838541 - L1ME LINE L1 -2938 3277 3031 420 221 0 21 chr11 131945380 131945475 -16837997 - THE1C LTR MaLR -83 292 200 3569 241 61 58 chr11 131945489 131946508 -16836964 - L1MEc LINE L1 -3201 3014 1999 1711 199 30 0 chr11 131946508 131946839 -16836633 - MER58B DNA MER1_type 0 341 1 3569 241 61 58 chr11 131946839 131947347 -16836125 - L1MEc LINE L1 -4216 1999 1494 226 190 69 0 chr11 131947347 131947405 -16836067 - Alu SINE Alu -1 301 240 3569 241 61 58 chr11 131947405 131948406 -16835066 - L1MEc LINE L1 -4721 1494 485 237 143 0 0 chr11 131948413 131948462 -16835010 - L1PB3 LINE L1 -2 6152 6104 * 858 144 0 7 chr11 131948450 131948589 -16834883 + L1PB3 LINE L1 5965 6102 -52 1319 243 56 20 chr11 131948594 131949038 -16834434 - L1MEc LINE L1 -5905 491 32 * 3908 245 72 12 chr11 131949031 131950381 -16833091 - L1M4 LINE L1 -964 5116 3686 287 144 125 29 chr11 131950377 131950481 -16832991 + L1M4 LINE L1 2856 2969 -3177 * 2877 258 54 67 chr11 131950488 131951065 -16832407 - L1ME LINE L1 -3303 2777 2194 2044 138 14 89 chr11 131951065 131951131 -16832341 - MLT2C1 LTR ERVL -3 394 325 411 21 0 0 chr11 131951131 131951179 -16832293 + (TG)n Simple_repeat Simple_repeat 2 49 0 2044 138 14 89 chr11 131951179 131951538 -16831934 - MLT2C1 LTR ERVL -72 325 1 2877 258 54 67 chr11 131951538 131951832 -16831640 - L1ME LINE L1 -3886 2194 1898 2398 97 0 7 chr11 131951832 131952141 -16831331 + AluSg1 SINE Alu 1 307 -2 2877 258 54 67 chr11 131952141 131953517 -16829955 - L1ME LINE L1 -4182 1898 564 4404 69 2 0 chr11 131953517 131954081 -16829391 - L1PA14 LINE L1 0 6161 5597 2877 258 54 67 chr11 131954081 131954585 -16828887 - L1ME LINE L1 -5516 564 55 328 207 58 11 chr11 131954660 131954747 -16828725 - MIR SINE MIR -98 164 74 213 303 77 39 chr11 131955096 131955251 -16828221 + MIR SINE MIR 28 188 -74 241 317 83 29 chr11 131956501 131956741 -16826731 + L2 LINE L2 2589 2841 -473 290 256 58 0 chr11 131957493 131957579 -16825893 + L2 LINE L2 3203 3293 -20 245 331 58 36 chr11 131957600 131957739 -16825733 - MIR SINE MIR -68 194 53 823 219 30 0 chr11 131958434 131958603 -16824869 + MIR SINE MIR 11 184 -78 227 345 50 36 chr11 131959068 131959207 -16824265 + MIR3 SINE MIR 9 149 -59 893 135 8 8 chr11 131959209 131959342 -16824130 + AluJb SINE Alu 1 133 -179 228 100 0 0 chr11 131959346 131959386 -16824086 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 855 136 8 0 chr11 131959391 131959516 -16823956 + FLAM_A SINE Alu 1 126 -7 249 206 44 59 chr11 131959826 131959894 -16823578 + MIR SINE MIR 47 113 -149 482 282 160 11 chr11 131959903 131960091 -16823381 - MIR SINE MIR -8 254 39 228 286 57 100 chr11 131960805 131960945 -16822527 - MIR3 SINE MIR -40 168 35 183 348 65 22 chr11 131961648 131961740 -16821732 - MIR3 SINE MIR -111 97 2 798 246 81 52 chr11 131962257 131962602 -16820870 + L1MC4a LINE L1 5581 5935 -1873 207 100 0 0 chr11 131964051 131964081 -16819391 + (TGGA)n Simple_repeat Simple_repeat 3 32 0 208 273 0 18 chr11 131964145 131964200 -16819272 + L3 LINE CR1 1504 1557 -20 332 339 80 36 chr11 131965370 131965562 -16817910 - MIR SINE MIR -56 206 6 960 91 5 38 chr11 131965770 131965801 -16817671 + (GGAA)n Simple_repeat Simple_repeat 1 210 0 960 91 5 38 chr11 131965801 131965987 -16817485 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 209 180 20 0 chr11 131966061 131966111 -16817361 + (CA)n Simple_repeat Simple_repeat 1 51 0 395 312 36 14 chr11 131966136 131966274 -16817198 + MIR SINE MIR 23 163 -99 182 246 88 0 chr11 131967505 131967562 -16815910 + MIR SINE MIR 70 131 -131 251 356 0 11 chr11 131967675 131967762 -16815710 - MIR SINE MIR -78 130 45 2056 90 72 7 chr11 131967831 131968109 -16815363 - AluSp SINE Alu -17 296 1 186 315 18 63 chr11 131969007 131969118 -16814354 - MIR SINE MIR -69 139 34 262 218 11 40 chr11 131970577 131970751 -16812721 + GA-rich Low_complexity Low_complexity 3 171 0 402 340 31 13 chr11 131971258 131971417 -16812055 + L2 LINE L2 3109 3270 -2 354 232 103 129 chr11 131971520 131971794 -16811678 + L2 LINE L2 3004 3271 -1 1234 106 0 0 chr11 131972056 131972217 -16811255 + AluSq SINE Alu 1 161 -152 189 74 0 0 chr11 131973409 131973436 -16810036 + (TCCCC)n Simple_repeat Simple_repeat 1 27 0 236 369 125 19 chr11 131973625 131973785 -16809687 - MIR SINE MIR -13 249 73 3313 175 52 10 chr11 131975618 131976236 -16807236 - LTR48B LTR ERV1 0 644 1 399 331 35 58 chr11 131976863 131977174 -16806298 - L2 LINE L2 -3 3269 2966 773 171 131 17 chr11 131977200 131977375 -16806097 - MER1B DNA MER1_type -11 328 134 324 219 122 79 chr11 131977413 131977577 -16805895 + L2 LINE L2 3104 3274 -39 281 197 14 0 chr11 131977584 131977655 -16805817 + GA-rich Low_complexity Low_complexity 4 75 0 520 294 17 76 chr11 131978679 131978888 -16804584 + MIR SINE MIR 4 196 -58 282 354 28 28 chr11 131979034 131979178 -16804294 + MIR3 SINE MIR 48 191 -17 333 285 162 39 chr11 131979522 131979701 -16803771 - L2 LINE L2 -6 3266 3066 2417 70 0 6 chr11 131980271 131980583 -16802889 + AluY SINE Alu 1 310 -1 221 301 199 20 chr11 131981652 131981798 -16801674 + MIR SINE MIR 21 192 -70 602 242 103 40 chr11 131981869 131982121 -16801351 - LTR16A LTR ERVL -6 444 177 254 219 73 0 chr11 131982299 131982381 -16801091 - LTR16A1 LTR ERVL -310 147 60 223 331 39 39 chr11 131982505 131982612 -16800860 + MIR SINE MIR 16 125 -83 1794 150 6 48 chr11 131982612 131982925 -16800547 - AluJb SINE Alu -12 300 1 223 331 39 39 chr11 131982925 131982947 -16800525 + MIR SINE MIR 124 145 -63 336 290 11 11 chr11 131983858 131983951 -16799521 - MER5A DNA MER1_type 0 189 97 637 205 106 19 chr11 131984132 131984293 -16799179 + MER5A DNA MER1_type 7 181 -8 335 320 40 33 chr11 131984887 131985037 -16798435 - MIR SINE MIR -78 184 34 829 251 5 36 chr11 131986153 131986348 -16797124 + AluJo SINE Alu 112 300 -12 459 284 66 35 chr11 131986544 131986741 -16796731 - MIR SINE MIR -51 211 9 186 43 0 0 chr11 131987055 131987078 -16796394 + (CCCTG)n Simple_repeat Simple_repeat 3 25 0 586 271 79 0 chr11 131987299 131987476 -16795996 + MIR SINE MIR 20 210 -52 191 263 276 13 chr11 131988087 131988163 -16795309 + MER5A DNA MER1_type 51 146 -43 2149 114 3 0 chr11 131988958 131989257 -16794215 + AluSx SINE Alu 1 300 -12 385 282 53 64 chr11 131989282 131989470 -16794002 - MIR SINE MIR -38 224 39 21 36 0 0 chr11 131989886 131989914 -16793558 + AT_rich Low_complexity Low_complexity 1 28 0 225 286 24 24 chr11 131989938 131990022 -16793450 + MIR SINE MIR 124 207 -55 2340 91 0 0 chr11 131990535 131990833 -16792639 + AluSg SINE Alu 1 298 -12 1216 209 67 6 chr11 131991024 131991340 -16792132 + L1MC1 LINE L1 5999 6333 0 2597 45 0 0 chr11 131991854 131992164 -16791308 + AluY SINE Alu 1 310 -1 206 206 186 31 chr11 131992508 131992605 -16790867 + L2 LINE L2 3151 3262 -10 468 314 197 35 chr11 131992897 131993672 -16789800 + L2 LINE L2 2382 3272 0 2068 139 0 0 chr11 131993749 131994050 -16789422 - AluSg SINE Alu -9 301 1 2201 97 13 0 chr11 131995046 131995354 -16788118 - AluSx SINE Alu 0 312 1 418 287 49 14 chr11 131995483 131995626 -16787846 - MIR SINE MIR -1 261 114 371 310 56 56 chr11 131995722 131995954 -16787518 + L3b LINE CR1 1311 1542 -41 811 279 17 21 chr11 131996078 131996311 -16787161 + MIR SINE MIR 14 245 -17 2042 102 3 11 chr11 131997098 131997424 -16786048 - AluSx SINE Alu 0 324 1 301 272 79 9 chr11 131997479 131997593 -16785879 + MER5A DNA MER1_type 40 161 -28 213 308 83 23 chr11 131997482 131997615 -16785857 - MER5B DNA MER1_type -31 147 7 * 193 354 94 0 chr11 131997927 131998023 -16785449 - MIR SINE MIR -70 138 34 616 296 70 13 chr11 132002120 132002350 -16781122 - MIR SINE MIR -12 250 8 206 365 85 40 chr11 132002607 132002807 -16780665 + L3b LINE CR1 1291 1499 -84 29 78 0 0 chr11 132003015 132003079 -16780393 + GC_rich Low_complexity Low_complexity 1 64 0 30 59 0 0 chr11 132003206 132003257 -16780215 + GC_rich Low_complexity Low_complexity 1 51 0 204 135 0 0 chr11 132003292 132003329 -16780143 + (CTG)n Simple_repeat Simple_repeat 1 37 0 223 303 101 37 chr11 132003851 132003960 -16779512 + MIR3 SINE MIR 78 193 -15 180 0 0 0 chr11 132004222 132004242 -16779230 + (TGGG)n Simple_repeat Simple_repeat 3 22 0 1240 202 23 12 chr11 132005765 132006022 -16777450 + AluJo SINE Alu 1 260 -52 538 258 23 0 chr11 132006135 132006263 -16777209 + MIR SINE MIR 39 169 -93 763 164 5 145 chr11 132006899 132007060 -16776412 + MER5B DNA MER1_type 1 128 -50 1759 95 0 40 chr11 132007060 132007312 -16776160 + AluSg SINE Alu 24 265 -45 763 164 5 145 chr11 132007312 132007357 -16776115 + MER5B DNA MER1_type 128 178 0 2252 119 0 0 chr11 132009270 132009572 -16773900 + AluSx SINE Alu 1 302 -10 386 247 24 0 chr11 132009615 132009700 -16773772 + MIR SINE MIR 67 153 -109 316 260 41 71 chr11 132011284 132011453 -16772019 - MLT1J LTR MaLR 0 511 348 315 234 234 22 chr11 132011648 132011785 -16771687 + MIR3 SINE MIR 16 181 -27 227 321 104 83 chr11 132012353 132012727 -16770745 - L2 LINE L2 -1 3271 2890 770 282 5 10 chr11 132013442 132013637 -16769835 - MIR SINE MIR -66 196 3 2212 103 7 0 chr11 132014219 132014521 -16768951 + AluSx SINE Alu 1 304 -8 2227 90 0 0 chr11 132014575 132014886 -16768586 + AluSc SINE Alu 1 309 0 290 342 0 50 chr11 132015053 132015173 -16768299 + MIR3 SINE MIR 51 164 -44 354 270 201 25 chr11 132015193 132015352 -16768120 + MIR SINE MIR 15 201 -61 301 235 37 12 chr11 132016326 132016407 -16767065 - MIR SINE MIR -67 195 113 349 298 255 0 chr11 132018090 132018251 -16765221 + MIR SINE MIR 16 217 -45 430 311 189 17 chr11 132019071 132019373 -16764099 - L2 LINE L2 -1 3271 2918 2038 133 10 0 chr11 132020033 132020326 -16763146 - AluSq SINE Alu -17 296 1 222 162 0 0 chr11 132020326 132020363 -16763109 + L2 LINE L2 3022 3058 -214 272 314 144 0 chr11 132020452 132020570 -16762902 + MIR SINE MIR 84 218 -44 249 33 0 0 chr11 132020760 132020790 -16762682 + (TCCC)n Simple_repeat Simple_repeat 4 33 0 451 278 151 7 chr11 132022148 132022318 -16761154 + MIR SINE MIR 23 218 -44 249 178 22 0 chr11 132023460 132023505 -16759967 - MER5A DNA MER1_type -10 179 134 186 299 45 15 chr11 132024437 132024504 -16758968 + MIR3 SINE MIR 134 202 -6 2046 101 4 0 chr11 132024628 132024906 -16758566 + AluSx SINE Alu 23 301 -11 279 276 81 66 chr11 132024911 132025037 -16758435 - L1ME LINE L1 -484 5637 5507 2527 184 22 13 chr11 132025037 132025494 -16757978 - MLT2C2 LTR ERVL -1 463 3 279 276 81 66 chr11 132025494 132025519 -16757953 - L1ME LINE L1 -614 5507 5484 258 234 223 37 chr11 132025779 132025967 -16757505 + LTR33 LTR ERVL 297 519 -2 191 304 82 25 chr11 132026392 132026550 -16756922 + L2 LINE L2 1604 1770 -1544 190 290 178 0 chr11 132028838 132028945 -16754527 + MIR3 SINE MIR 59 184 -24 570 323 96 0 chr11 132028994 132029214 -16754258 + MIR SINE MIR 16 256 -6 268 302 66 19 chr11 132029418 132029524 -16753948 - MIR3 SINE MIR 0 208 98 2283 93 3 0 chr11 132029900 132030211 -16753261 + AluSp SINE Alu 2 313 0 2202 99 17 0 chr11 132030495 132030797 -16752675 + AluSc SINE Alu 1 307 -2 235 0 28 28 chr11 132030897 132030933 -16752539 + (CA)n Simple_repeat Simple_repeat 1 36 0 1777 106 0 40 chr11 132030966 132031240 -16752232 - AluSx SINE Alu -49 263 1 245 207 230 0 chr11 132031447 132031534 -16751938 + L2 LINE L2 3164 3270 -2 888 296 122 10 chr11 132033420 132034007 -16749465 + L2 LINE L2 2669 3312 -1 21 0 0 0 chr11 132037614 132037635 -16745837 + AT_rich Low_complexity Low_complexity 1 21 0 355 288 68 8 chr11 132038260 132038420 -16745052 - MIR SINE MIR -54 208 21 2027 108 3 7 chr11 132038649 132038936 -16744536 + AluSq SINE Alu 1 286 -27 441 36 0 0 chr11 132038936 132038991 -16744481 + (TG)n Simple_repeat Simple_repeat 2 56 0 731 290 19 14 chr11 132040099 132040306 -16743166 - MIR SINE MIR -20 242 35 551 255 12 43 chr11 132040313 132040474 -16742998 + L2 LINE L2 3158 3313 0 1355 214 41 98 chr11 132041717 132042156 -16741316 + MLT2D LTR ERVL 1 414 0 982 256 154 43 chr11 132042303 132042834 -16740638 - L2 LINE L2 -3 3310 2710 1889 125 14 0 chr11 132042834 132043142 -16740330 - AluY SINE Alu 0 312 1 982 256 154 43 chr11 132043142 132043170 -16740302 - L2 LINE L2 -603 2710 2687 805 183 0 70 chr11 132043175 132043361 -16740111 + FRAM SINE Alu 4 176 0 438 279 16 8 chr11 132043361 132043490 -16739982 - L2 LINE L2 -616 2698 2569 1124 175 92 0 chr11 132043817 132044045 -16739427 + MER63 DNA MER1_type 1 249 -812 2287 97 0 31 chr11 132094732 132095051 -16688421 + AluSg SINE Alu 1 309 -1 2270 101 3 35 chr11 132095061 132095379 -16688093 + AluSc SINE Alu 2 309 0 2228 122 0 3 chr11 132095996 132096291 -16687181 - AluSx SINE Alu -18 294 1 432 244 105 35 chr11 132096754 132096983 -16686489 + L1MC4 LINE L1 7652 7896 -146 319 343 45 8 chr11 132096984 132097118 -16686354 - MIR3 SINE MIR -19 189 51 323 257 113 40 chr11 132097382 132097601 -16685871 + MIR SINE MIR 12 259 -3 985 223 39 10 chr11 132097730 132098040 -16685432 + L1P LINE L1 4230 4548 -1598 270 0 0 0 chr11 132098949 132098979 -16684493 + (CA)n Simple_repeat Simple_repeat 2 31 0 598 291 70 13 chr11 132103164 132103394 -16680078 - MIR SINE MIR -12 250 8 21 0 0 0 chr11 132104866 132104887 -16678585 + AT_rich Low_complexity Low_complexity 1 21 0 412 162 0 0 chr11 132105827 132105895 -16677577 + FRAM/FAM SINE Alu 19 86 -89 219 300 0 0 chr11 132107006 132107056 -16676416 + MIR SINE MIR 69 118 -90 454 272 141 11 chr11 132107078 132107269 -16676203 + MIR SINE MIR 20 235 -27 1035 118 13 0 chr11 132108162 132108315 -16675157 - FRAM SINE Alu -20 156 2 516 269 86 20 chr11 132108567 132108764 -16674708 - MIR SINE MIR -37 225 16 286 263 42 25 chr11 132108753 132108871 -16674601 + MIR3 SINE MIR 52 171 -37 * 185 184 0 82 chr11 132109152 132109201 -16674271 - L2 LINE L2 -85 3228 3184 382 250 90 70 chr11 132109246 132109402 -16674070 - MIR SINE MIR -44 218 60 2435 78 0 3 chr11 132109503 132109797 -16673675 + AluSx SINE Alu 3 295 -17 1694 183 0 21 chr11 132109797 132110081 -16673391 - AluJo SINE Alu -34 278 1 186 43 0 0 chr11 132110126 132110149 -16673323 + (CA)n Simple_repeat Simple_repeat 1 23 0 381 285 15 15 chr11 132110602 132110732 -16672740 - AluSp/q SINE Alu 0 303 174 2299 94 7 3 chr11 132110832 132111120 -16672352 - AluSg SINE Alu -21 289 1 369 192 0 0 chr11 132111149 132111227 -16672245 - L3b LINE CR1 -190 1393 1316 2380 105 0 3 chr11 132111228 132111534 -16671938 - AluSx SINE Alu -7 305 1 259 148 164 0 chr11 132112091 132112152 -16671320 - MER5C DNA MER1_type 0 324 254 2441 92 3 0 chr11 132112282 132112585 -16670887 - AluSx SINE Alu -8 304 1 193 320 64 0 chr11 132112585 132112663 -16670809 - MER5C DNA MER1_type -215 109 27 320 359 60 0 chr11 132114976 132115143 -16668329 + MIR3 SINE MIR 29 205 -3 671 216 72 12 chr11 132115254 132115421 -16668051 + MIR SINE MIR 86 262 0 888 276 16 12 chr11 132115893 132116147 -16667325 + MIR SINE MIR 6 260 -2 293 309 12 0 chr11 132116205 132116289 -16667183 - MIR3 SINE MIR -48 160 76 375 295 31 16 chr11 132116891 132117020 -16666452 + MIR SINE MIR 12 142 -120 340 350 25 6 chr11 132117414 132117577 -16665895 + MIR3 SINE MIR 33 198 -10 196 250 0 0 chr11 132118309 132118353 -16665119 - MIR3 SINE MIR -12 196 153 1691 190 7 3 chr11 132119818 132120107 -16663365 + AluJb SINE Alu 7 296 -16 333 0 0 0 chr11 132120188 132120225 -16663247 + (TG)n Simple_repeat Simple_repeat 2 38 0 180 0 0 0 chr11 132120225 132120245 -16663227 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 284 198 11 66 chr11 132120283 132120374 -16663098 + MIR SINE MIR 74 159 -103 510 286 95 71 chr11 132120806 132121100 -16662372 - L3 LINE CR1 -1 1576 1276 197 300 38 12 chr11 132121130 132121210 -16662262 - MIR SINE MIR -7 255 174 327 207 92 26 chr11 132121210 132121358 -16662114 - L1MC5 LINE L1 -1 8041 7806 243 317 28 0 chr11 132121467 132121612 -16661860 - L1MC5 LINE L1 -169 7792 7644 305 107 0 179 chr11 132121919 132121969 -16661503 - L1MB2 LINE L1 -1 6170 6113 394 45 0 45 chr11 132121969 132122036 -16661436 + (TTTA)n Simple_repeat Simple_repeat 2 65 0 2144 121 0 0 chr11 132122036 132122317 -16661155 - AluSg SINE Alu -29 281 1 305 107 0 179 chr11 132122317 132122349 -16661123 - L1MB2 LINE L1 -56 6115 6102 658 272 16 37 chr11 132122351 132122594 -16660878 - L3 LINE CR1 -702 875 638 251 339 25 33 chr11 132122980 132123101 -16660371 - L2 LINE L2 -48 3265 3146 1423 165 129 0 chr11 132123116 132123215 -16660257 + AluJb SINE Alu 1 86 -226 393 22 0 0 chr11 132123215 132123261 -16660211 + (CA)n Simple_repeat Simple_repeat 1 46 0 1423 165 129 0 chr11 132123261 132123409 -16660063 + AluJb SINE Alu 86 280 -32 375 260 81 16 chr11 132123464 132123587 -16659885 - L2 LINE L2 -222 3050 2920 314 314 46 27 chr11 132123663 132123851 -16659621 - MIR3 SINE MIR -66 196 4 1717 292 161 11 chr11 132124837 132125987 -16657485 + L2 LINE L2 1984 3313 0 1971 115 61 4 chr11 132126161 132126440 -16657032 - AluSx SINE Alu -17 295 1 233 140 53 18 chr11 132126809 132126866 -16656606 + (TATATG)n Simple_repeat Simple_repeat 1 59 0 369 227 69 89 chr11 132127014 132127217 -16656255 + L1ME4a LINE L1 5711 5909 -212 28 48 0 0 chr11 132127243 132127285 -16656187 + AT_rich Low_complexity Low_complexity 1 42 0 1983 149 3 7 chr11 132127344 132127670 -16655802 - AluJb SINE Alu 0 312 1 449 265 10 0 chr11 132129104 132129206 -16654266 + MIR SINE MIR 40 142 -66 251 261 130 0 chr11 132129243 132129312 -16654160 - L2 LINE L2 -46 3226 3149 275 265 53 68 chr11 132129442 132129574 -16653898 - L2 LINE L2 -195 3077 2948 1967 157 0 3 chr11 132129729 132130022 -16653450 - AluJb SINE Alu -20 292 1 467 311 115 44 chr11 132130159 132130455 -16653017 + L3b LINE CR1 1261 1577 -6 529 216 25 145 chr11 132131115 132131356 -16652116 - MIR SINE MIR -25 237 26 391 300 50 7 chr11 132131855 132131995 -16651477 + MIR3 SINE MIR 30 175 -33 2244 127 0 6 chr11 132132762 132133076 -16650396 + AluSx SINE Alu 1 312 0 686 117 9 0 chr11 132133076 132133187 -16650285 + (GGAA)n Simple_repeat Simple_repeat 1 112 0 864 272 53 9 chr11 132133192 132133420 -16650052 + MIR SINE MIR 25 262 0 280 333 136 51 chr11 132133427 132134228 -16649244 - L2 LINE L2 -743 2571 1703 211 167 24 0 chr11 132135313 132135355 -16648117 - L2 LINE L2 -89 3183 3141 1073 91 0 0 chr11 132135894 132136026 -16647446 + AluSx SINE Alu 1 132 -181 280 136 11 57 chr11 132136057 132136145 -16647327 + A-rich Low_complexity Low_complexity 5 88 0 1473 89 0 16 chr11 132136149 132136340 -16647132 + AluSx SINE Alu 116 303 -9 1412 269 94 33 chr11 132136432 132136522 -16646950 - MER20B DNA MER1_type -5 778 695 2058 133 6 19 chr11 132136522 132136838 -16646634 + AluSx SINE Alu 1 312 0 1412 269 94 33 chr11 132136838 132137443 -16646029 - MER20B DNA MER1_type -88 695 6 187 267 0 133 chr11 132137569 132137629 -16645843 - L2 LINE L2 -88 3184 3133 1309 74 17 0 chr11 132137776 132137951 -16645521 + L1PA7 LINE L1 5976 6153 -1 506 296 143 16 chr11 132138001 132138232 -16645240 - MIR SINE MIR -1 261 4 614 285 13 6 chr11 132138287 132138445 -16645027 + MIR SINE MIR 104 262 0 568 296 31 0 chr11 132139243 132139402 -16644070 - MIR SINE MIR -13 249 86 637 174 28 35 chr11 132139426 132139570 -16643902 - MIR SINE MIR -32 230 88 299 96 19 0 chr11 132139625 132139677 -16643795 + (GA)n Simple_repeat Simple_repeat 1 53 0 243 251 205 0 chr11 132140313 132140419 -16643053 - MIR SINE MIR -61 147 57 614 290 87 9 chr11 132140769 132141000 -16642472 + MIR SINE MIR 14 262 0 2114 140 13 0 chr11 132141402 132141709 -16641763 + AluSx SINE Alu 1 311 -1 432 0 0 0 chr11 132142801 132142849 -16640623 + (TG)n Simple_repeat Simple_repeat 2 49 0 1856 106 0 8 chr11 132142972 132143217 -16640255 + AluSx SINE Alu 49 291 -21 290 273 101 0 chr11 132144442 132144541 -16638931 - L3 LINE CR1 -300 1277 1169 459 331 49 79 chr11 132144637 132144911 -16638561 - L1MC4a LINE L1 -1755 6053 5791 2145 120 0 7 chr11 132144911 132145212 -16638260 - AluSx SINE Alu -13 299 1 459 331 49 79 chr11 132145212 132145306 -16638166 - L1MC4a LINE L1 -2017 5791 5696 221 377 0 69 chr11 132145325 132145455 -16638017 - L3 LINE CR1 -429 1148 1028 216 284 52 60 chr11 132145489 132145605 -16637867 - L2 LINE L2 -18 3295 3181 * 949 307 186 29 chr11 132145604 132146190 -16637282 - L3 LINE CR1 -552 1025 348 354 245 85 58 chr11 132146222 132146424 -16637048 + MIR SINE MIR 37 238 -24 210 294 60 13 chr11 132146556 132146651 -16636821 - MIR SINE MIR -39 169 62 372 130 0 0 chr11 132147116 132147185 -16636287 + (A)n Simple_repeat Simple_repeat 1 69 0 277 282 78 10 chr11 132147494 132147597 -16635875 + MIR SINE MIR 20 129 -79 306 317 24 0 chr11 132147801 132147924 -16635548 + (TA)n Simple_repeat Simple_repeat 1 126 0 279 298 100 118 chr11 132148707 132149036 -16634436 + L2 LINE L2 2949 3271 -1 493 299 29 29 chr11 132149526 132149733 -16633739 + MIR SINE MIR 6 212 -50 213 300 0 0 chr11 132149826 132149876 -16633596 + (TG)n Simple_repeat Simple_repeat 2 51 0 392 259 61 117 chr11 132150312 132150509 -16632963 + MIR3 SINE MIR 2 187 -21 479 304 0 9 chr11 132150643 132150755 -16632717 + MIR SINE MIR 34 144 -118 2479 97 0 0 chr11 132150824 132151134 -16632338 - AluY SINE Alu -1 310 1 281 333 13 50 chr11 132151147 132151306 -16632166 - MIR3 SINE MIR -40 168 16 221 28 83 0 chr11 132151377 132151413 -16632059 + A-rich Low_complexity Low_complexity 2 40 0 204 352 28 19 chr11 132152917 132153025 -16630447 + MIR SINE MIR 17 125 -83 29 0 0 0 chr11 132153972 132154001 -16629471 + AT_rich Low_complexity Low_complexity 1 29 0 301 311 0 39 chr11 132155114 132155217 -16628255 - MIR SINE MIR -64 144 46 3477 96 22 2 chr11 132155426 132155918 -16627554 - L1PA13 LINE L1 -3 6160 5659 1463 145 0 31 chr11 132156804 132157032 -16626440 - AluJo SINE Alu -19 293 73 221 291 35 23 chr11 132158327 132158413 -16625059 - L2 LINE L2 -85 3187 3101 319 245 147 0 chr11 132159285 132159387 -16624085 - MIR SINE MIR -3 259 143 2273 121 0 0 chr11 132159508 132159806 -16623666 + AluSx SINE Alu 1 298 -14 584 255 23 16 chr11 132160150 132160327 -16623145 + MIR SINE MIR 29 206 -56 184 296 0 0 chr11 132160352 132160396 -16623076 - MIR SINE MIR -135 73 30 625 330 16 5 chr11 132161908 132162102 -16621370 - MER91A DNA MER1_type 0 196 1 192 171 38 162 chr11 132162301 132162406 -16621066 - MIR3 SINE MIR -7 201 110 * 272 344 100 20 chr11 132162389 132162639 -16620833 - L2 LINE L2 -661 2653 2384 2083 156 10 0 chr11 132163078 132163386 -16620086 + AluJb SINE Alu 1 311 -1 300 27 0 0 chr11 132163969 132164006 -16619466 + (A)n Simple_repeat Simple_repeat 1 37 0 21 36 0 0 chr11 132164017 132164045 -16619427 + GC_rich Low_complexity Low_complexity 1 28 0 182 290 16 0 chr11 132164970 132165032 -16618440 - MER5C DNA MER1_type -30 294 232 271 178 22 0 chr11 132165350 132165395 -16618077 - MER5A DNA MER1_type -10 179 134 222 271 260 0 chr11 132166286 132166382 -16617090 + MIR3 SINE MIR 82 202 -6 2158 101 4 0 chr11 132166506 132166784 -16616688 + AluSx SINE Alu 23 301 -11 243 254 59 63 chr11 132166789 132166915 -16616557 - L1ME LINE L1 -484 5637 5505 2444 184 22 13 chr11 132166915 132167372 -16616100 - MLT2C2 LTR ERVL -1 463 3 243 254 59 63 chr11 132167372 132167396 -16616076 - L1ME LINE L1 -616 5505 5482 187 300 146 0 chr11 132170719 132170829 -16612643 + MIR3 SINE MIR 59 184 -24 593 309 100 5 chr11 132170878 132171098 -16612374 + MIR SINE MIR 16 256 -6 282 302 66 19 chr11 132171302 132171408 -16612064 - MIR3 SINE MIR 0 208 98 2405 91 3 0 chr11 132171784 132172093 -16611379 + AluSp SINE Alu 2 311 -2 232 220 20 0 chr11 132172226 132172276 -16611196 - L2 LINE L2 -16 3256 3206 2299 103 17 0 chr11 132172379 132172680 -16610792 + AluSc SINE Alu 1 306 -3 338 238 0 25 chr11 132172780 132172860 -16610612 - L1MC4 LINE L1 -1351 6691 6614 272 232 85 24 chr11 132173545 132173627 -16609845 - L2 LINE L2 -1 3271 3185 2327 85 0 0 chr11 132174792 132175073 -16608399 + AluSg SINE Alu 1 281 -29 262 0 0 0 chr11 132175073 132175102 -16608370 + (CAA)n Simple_repeat Simple_repeat 2 180 0 3177 184 16 4 chr11 132175961 132176516 -16606956 + MER68 LTR ERV1 1 562 0 21 0 0 0 chr11 132178295 132178316 -16605156 + AT_rich Low_complexity Low_complexity 1 21 0 843 159 88 22 chr11 132178324 132178506 -16604966 + MLT1B LTR MaLR 2 195 -195 267 31 0 0 chr11 132178506 132178538 -16604934 + (CA)n Simple_repeat Simple_repeat 1 32 0 250 143 122 0 chr11 132178538 132178587 -16604885 + MLT1B LTR MaLR 150 204 -263 233 191 128 0 chr11 132178612 132178659 -16604813 + MLT1B LTR MaLR 143 195 -195 273 57 0 0 chr11 132178664 132178699 -16604773 + (CA)n Simple_repeat Simple_repeat 2 36 0 233 191 128 0 chr11 132178699 132178746 -16604726 + MLT1B LTR MaLR 143 195 -195 207 139 0 0 chr11 132178746 132178782 -16604690 + (CA)n Simple_repeat Simple_repeat 1 36 0 268 149 128 0 chr11 132178782 132178829 -16604643 + MLT1B LTR MaLR 143 195 -195 327 85 0 0 chr11 132178829 132178876 -16604596 + (CA)n Simple_repeat Simple_repeat 1 47 0 336 127 0 0 chr11 132178906 132178961 -16604511 + (CA)n Simple_repeat Simple_repeat 2 56 0 233 191 128 0 chr11 132178961 132179008 -16604464 + MLT1B LTR MaLR 143 195 -195 189 107 0 0 chr11 132179008 132179036 -16604436 + (CA)n Simple_repeat Simple_repeat 1 28 0 233 191 128 0 chr11 132179036 132179083 -16604389 + MLT1B LTR MaLR 143 195 -195 180 111 0 0 chr11 132179091 132179118 -16604354 + (CA)n Simple_repeat Simple_repeat 2 28 0 294 29 0 0 chr11 132179166 132179201 -16604271 + (CA)n Simple_repeat Simple_repeat 2 36 0 291 93 0 0 chr11 132179242 132179285 -16604187 + (CA)n Simple_repeat Simple_repeat 1 43 0 1199 164 14 0 chr11 132179352 132179559 -16603913 + MLT1B LTR MaLR 181 390 0 2351 66 24 7 chr11 132179583 132179872 -16603600 + AluY SINE Alu 1 294 -17 255 253 11 69 chr11 132181654 132181741 -16601731 + MIR SINE MIR 45 126 -82 206 180 40 0 chr11 132181761 132181811 -16601661 + GA-rich Low_complexity Low_complexity 3 54 0 252 0 0 0 chr11 132182407 132182435 -16601037 + (A)n Simple_repeat Simple_repeat 1 28 0 1106 151 23 50 chr11 132183874 132184092 -16599380 - MER20 DNA MER1_type -2 217 6 180 297 94 31 chr11 132184338 132184466 -16599006 - L3 LINE CR1 -12 1565 1430 2519 83 0 3 chr11 132186119 132186432 -16597040 + AluSx SINE Alu 1 312 0 302 0 0 85 chr11 132186546 132186593 -16596879 + (C)n Simple_repeat Simple_repeat 1 43 0 330 26 0 0 chr11 132186593 132186632 -16596840 + (A)n Simple_repeat Simple_repeat 1 39 0 716 269 56 0 chr11 132186759 132186975 -16596497 - MIR SINE MIR -4 258 31 1712 259 134 11 chr11 132187319 132188174 -16595298 - L2 LINE L2 -121 3192 2235 588 304 113 50 chr11 132188406 132189595 -16593877 - L2 LINE L2 -1 3271 2021 182 248 148 126 chr11 132189611 132189767 -16593705 - L2 LINE L2 -172 3100 2936 2417 98 3 0 chr11 132189767 132190074 -16593398 - AluSq SINE Alu -5 308 1 182 248 148 126 chr11 132190074 132190147 -16593325 - L2 LINE L2 -336 2936 2866 249 304 107 101 chr11 132190274 132190768 -16592704 - L2 LINE L2 -2 3270 2776 494 322 13 0 chr11 132190932 132191081 -16592391 - L2 LINE L2 -5 3267 3117 2228 112 0 0 chr11 132191383 132191692 -16591780 + AluSx SINE Alu 1 309 0 471 327 65 32 chr11 132192102 132192350 -16591122 - MIR SINE MIR -6 256 1 217 316 26 0 chr11 132192373 132192449 -16591023 + L3 LINE CR1 1499 1576 -1 255 253 13 13 chr11 132192586 132192665 -16590807 - MLT1L LTR MaLR -536 79 1 226 264 0 0 chr11 132193218 132193271 -16590201 + MER103 DNA DNA 2 54 -112 354 300 0 0 chr11 132193430 132193520 -16589952 - MER94 DNA DNA -1 133 44 180 0 0 0 chr11 132193520 132193540 -16589932 + (T)n Simple_repeat Simple_repeat 1 20 0 565 209 44 25 chr11 132193928 132194086 -16589386 + MIR SINE MIR 89 249 -13 184 281 188 42 chr11 132194345 132194441 -16589031 + L2 LINE L2 3160 3269 -3 249 303 113 14 chr11 132194508 132194650 -16588822 - MER5A DNA MER1_type -33 156 1 468 226 128 5 chr11 132194771 132194921 -16588551 + MER5A DNA MER1_type 4 176 -13 715 228 62 0 chr11 132194922 132195084 -16588388 + MER5B DNA MER1_type 3 174 -4 221 265 0 15 chr11 132195621 132195689 -16587783 - MIR SINE MIR 0 262 196 350 207 23 0 chr11 132195689 132195776 -16587696 + (CATATA)n Simple_repeat Simple_repeat 4 92 0 699 247 22 6 chr11 132195780 132195958 -16587514 - MIR SINE MIR -58 204 24 2658 140 60 9 chr11 132195959 132196394 -16587078 + LTR32 LTR ERVL 15 471 0 216 237 102 0 chr11 132196531 132196590 -16586882 - L2 LINE L2 -8 3264 3200 2343 78 0 3 chr11 132196858 132197154 -16586318 + AluY SINE Alu 1 295 -16 624 111 0 0 chr11 132197970 132198060 -16585412 - AluY SINE Alu -8 303 214 2482 85 0 3 chr11 132198205 132198512 -16584960 - AluSp SINE Alu -7 306 1 328 321 12 48 chr11 132198606 132198757 -16584715 - MIR3 SINE MIR -41 167 21 1941 157 13 3 chr11 132198757 132199062 -16584410 - AluJb SINE Alu -2 310 3 328 321 12 48 chr11 132199062 132199078 -16584394 - MIR3 SINE MIR -187 21 6 1013 168 22 22 chr11 132200453 132200638 -16582834 - L1MB7 LINE L1 -2 6182 5998 255 61 0 0 chr11 132201767 132201800 -16581672 + (T)n Simple_repeat Simple_repeat 1 33 0 2214 93 16 19 chr11 132201983 132202294 -16581178 - AluSg SINE Alu 0 310 1 402 209 12 0 chr11 132202888 132202973 -16580499 + FRAM/FAM SINE Alu 1 69 -97 272 239 22 22 chr11 132203352 132203444 -16580028 + MIR SINE MIR 53 144 -118 320 250 21 10 chr11 132203692 132203788 -16579684 - MIR SINE MIR -91 117 21 358 240 35 99 chr11 132204080 132204251 -16579221 - MIR SINE MIR -1 261 102 249 33 0 0 chr11 132204257 132204287 -16579185 + (T)n Simple_repeat Simple_repeat 1 30 0 26 18 0 71 chr11 132204308 132204364 -16579108 + GC_rich Low_complexity Low_complexity 1 52 0 234 91 0 0 chr11 132206552 132206585 -16576887 + (T)n Simple_repeat Simple_repeat 1 33 0 2231 80 28 0 chr11 132208631 132208917 -16574555 - AluSx SINE Alu -16 296 3 239 292 15 0 chr11 132209613 132209678 -16573794 - MIR SINE MIR -169 93 28 189 309 36 27 chr11 132209811 132209921 -16573551 - L3b LINE CR1 -110 1473 1363 2407 103 0 3 chr11 132211544 132211856 -16571616 + AluSx SINE Alu 1 311 -1 1580 46 0 16 chr11 132212626 132212820 -16570652 - MER107 DNA MER1_type 0 197 7 2517 60 3 0 chr11 132212983 132213283 -16570189 + AluY SINE Alu 1 301 -10 24 0 0 0 chr11 132213464 132213488 -16569984 + AT_rich Low_complexity Low_complexity 1 24 0 1092 260 30 33 chr11 132213771 132214106 -16569366 - MLT1I LTR MaLR -17 392 59 556 283 68 14 chr11 132214261 132214480 -16568992 - L1MC5 LINE L1 -30 7931 7701 728 178 0 7 chr11 132214675 132214827 -16568645 + CT-rich Low_complexity Low_complexity 4 154 0 336 24 0 0 chr11 132214828 132214869 -16568603 + (TG)n Simple_repeat Simple_repeat 2 42 0 28 0 0 0 chr11 132215822 132215850 -16567622 + AT_rich Low_complexity Low_complexity 1 28 0 1806 132 85 47 chr11 132215952 132216121 -16567351 + MER46B DNA MER2_type 3 68 -2663 2234 112 3 0 chr11 132216121 132216424 -16567048 + AluSp SINE Alu 1 304 -9 1806 132 85 47 chr11 132216424 132216596 -16566876 + MER46B DNA MER2_type 68 232 -4 183 80 0 0 chr11 132217001 132217026 -16566446 + (TG)n Simple_repeat Simple_repeat 2 26 0 457 194 127 80 chr11 132217072 132217310 -16566162 + MIR SINE MIR 15 262 0 2459 75 0 0 chr11 132217798 132218091 -16565381 + AluY SINE Alu 4 296 -15 2221 70 28 7 chr11 132218629 132218913 -16564559 + AluY SINE Alu 1 290 -21 382 229 218 12 chr11 132219236 132219406 -16564066 + L1MEc LINE L1 1261 1465 -4931 2002 93 0 0 chr11 132219513 132219770 -16563702 - AluSq SINE Alu -56 257 1 434 319 71 0 chr11 132219777 132219959 -16563513 - MIR SINE MIR -11 251 57 192 306 78 63 chr11 132221485 132221691 -16561781 - L3 LINE CR1 -24 1553 1345 292 353 59 32 chr11 132223373 132223560 -16559912 - MIR SINE MIR -24 238 47 940 154 6 25 chr11 132223567 132223729 -16559743 + FRAM SINE Alu 8 166 -10 226 218 18 0 chr11 132224043 132224098 -16559374 - MER116 DNA Mariner -23 57 2 1900 141 10 16 chr11 132224214 132224518 -16558954 - AluSx SINE Alu -10 302 1 275 282 309 0 chr11 132224829 132224978 -16558494 - MIR SINE MIR -11 251 57 188 35 35 0 chr11 132225016 132225045 -16558427 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1587 111 131 12 chr11 132225049 132225293 -16558179 - AluSg SINE Alu -37 273 1 617 315 77 73 chr11 132225296 132225580 -16557892 - L2 LINE L2 -30 3242 2961 1936 158 0 0 chr11 132225580 132225864 -16557608 - AluSx SINE Alu -23 289 6 617 315 77 73 chr11 132225864 132226227 -16557245 - L2 LINE L2 -311 2961 2595 1985 214 65 52 chr11 132226524 132226570 -16556902 - MLT1F LTR MaLR -1 541 497 1093 159 24 19 chr11 132226570 132226777 -16556695 - MER3 DNA MER1_type -1 208 1 1985 214 65 52 chr11 132226777 132227230 -16556242 - MLT1F LTR MaLR -45 497 32 1614 164 10 64 chr11 132227230 132227541 -16555931 - AluJb SINE Alu -18 294 1 1985 214 65 52 chr11 132227541 132227574 -16555898 - MLT1F LTR MaLR -510 32 1 394 239 41 87 chr11 132228287 132228393 -16555079 + MER113 DNA MER1_type? 4 96 -425 1994 147 3 3 chr11 132228393 132228692 -16554780 - AluJb SINE Alu -13 299 1 394 239 41 87 chr11 132228692 132228803 -16554669 + MER113 DNA MER1_type? 96 211 -310 1810 115 112 29 chr11 132229167 132229479 -16553993 + MER1B DNA MER1_type 1 338 -1 2536 68 0 0 chr11 132230818 132231126 -16552346 + AluY SINE Alu 1 308 -3 25 0 0 0 chr11 132231425 132231450 -16552022 + AT_rich Low_complexity Low_complexity 1 25 0 518 194 176 12 chr11 132231471 132231641 -16551831 - MER113 DNA MER1_type? -320 201 4 609 243 103 0 chr11 132231971 132232107 -16551365 - FRAM SINE Alu -16 150 1 442 298 13 0 chr11 132232321 132232472 -16551000 + L1ME4a LINE L1 5503 5655 -466 230 278 144 23 chr11 132232615 132232816 -16550656 + L1ME4a LINE L1 5757 5999 -122 1251 201 119 11 chr11 132232816 132233085 -16550387 - AluSg SINE Alu -11 299 2 230 278 144 23 chr11 132233085 132233146 -16550326 + L1ME4a LINE L1 5999 6051 -70 211 323 16 0 chr11 132233419 132233481 -16549991 - L2 LINE L2 -809 2505 2443 1737 186 10 0 chr11 132233975 132234266 -16549206 + AluJo SINE Alu 1 294 -18 813 115 0 0 chr11 132234334 132234447 -16549025 - FLAM_C SINE Alu -20 123 11 2271 107 0 3 chr11 132234732 132235030 -16548442 + AluSx SINE Alu 1 297 -15 273 57 0 0 chr11 132235346 132235381 -16548091 + (T)n Simple_repeat Simple_repeat 1 35 0 27 29 0 0 chr11 132235381 132235415 -16548057 + GC_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr11 132235565 132235587 -16547885 + AT_rich Low_complexity Low_complexity 1 22 0 2558 75 0 0 chr11 132235602 132235910 -16547562 - AluSg SINE Alu -2 308 1 1763 180 0 31 chr11 132235935 132236252 -16547220 + AluJb SINE Alu 1 307 -5 581 185 0 9 chr11 132236334 132236442 -16547030 - AluJ SINE Alu -23 289 183 1122 155 0 11 chr11 132236508 132236689 -16546783 - AluJ SINE Alu -133 179 1 338 314 57 29 chr11 132236730 132236905 -16546567 - MIR SINE MIR -34 228 49 27 0 0 0 chr11 132236958 132236985 -16546487 + AT_rich Low_complexity Low_complexity 1 27 0 1185 107 37 0 chr11 132236985 132237172 -16546300 - L1PA13 LINE L1 -5 6158 5965 2171 135 0 0 chr11 132237364 132237675 -16545797 - AluSx SINE Alu -1 311 1 25 95 0 0 chr11 132238339 132238413 -16545059 + AT_rich Low_complexity Low_complexity 1 74 0 912 296 73 25 chr11 132238413 132238985 -16544487 - L1M4 LINE L1 -1166 4980 4381 300 348 18 0 chr11 132238994 132239106 -16544366 + CT-rich Low_complexity Low_complexity 4 117 0 297 359 47 36 chr11 132239152 132239323 -16544149 + MIR SINE MIR 3 172 -63 2256 85 7 0 chr11 132239453 132239747 -16543725 + AluSp SINE Alu 1 296 -17 363 310 35 49 chr11 132240963 132241105 -16542367 + MIR SINE MIR 46 185 -77 572 149 43 0 chr11 132241695 132241789 -16541683 + L2 LINE L2 3215 3312 -1 2365 80 3 0 chr11 132242053 132242353 -16541119 - AluSp SINE Alu -12 301 1 27 49 0 0 chr11 132242963 132243004 -16540468 + AT_rich Low_complexity Low_complexity 1 41 0 2588 173 64 13 chr11 132243807 132244356 -16539116 - L1MC3 LINE L1 0 7785 7209 4542 190 101 68 chr11 132244719 132244760 -16538712 - L1ME1 LINE L1 -10 6156 6118 3972 119 34 0 chr11 132244760 132245384 -16538088 - L1MA3 LINE L1 -3 6302 5658 4542 190 101 68 chr11 132245384 132245595 -16537877 - L1ME1 LINE L1 -48 6118 5915 1395 171 59 31 chr11 132245595 132245881 -16537591 - AluJo SINE Alu -18 294 1 4542 190 101 68 chr11 132245881 132246179 -16537293 - L1ME1 LINE L1 -251 5915 5628 799 143 15 15 chr11 132246179 132246312 -16537160 - FLAM_C SINE Alu 0 133 1 4542 190 101 68 chr11 132246312 132248356 -16535116 - L1ME1 LINE L1 -538 5628 3480 273 233 41 27 chr11 132248355 132248428 -16535044 - L1ME3A LINE L1 -168 6002 5929 * 6001 217 114 67 chr11 132248411 132248930 -16534542 - L1MC3 LINE L1 -10 7775 7282 269 318 0 0 chr11 132248930 132248993 -16534479 - MLT1F1 LTR MaLR -438 129 67 6001 217 114 67 chr11 132248993 132250493 -16532979 - L1MC3 LINE L1 -503 7282 5595 686 284 30 11 chr11 132250490 132250758 -16532714 - L1ME3A LINE L1 -223 5947 5675 * 350 274 170 14 chr11 132250795 132251007 -16532465 - L1ME3A LINE L1 -566 5604 5360 245 347 27 41 chr11 132251056 132251102 -16532370 - L2 LINE L2 -2881 433 388 2356 71 3 0 chr11 132251102 132251398 -16532074 + AluY SINE Alu 1 297 -14 245 347 27 41 chr11 132251398 132251509 -16531963 - L2 LINE L2 -2926 388 277 3291 122 26 39 chr11 132251509 132252043 -16531429 - MER1A DNA MER1_type 0 527 1 245 347 27 41 chr11 132252043 132252103 -16531369 - L2 LINE L2 -3037 277 218 207 241 86 0 chr11 132254932 132254990 -16528482 - MIR SINE MIR -30 232 170 323 333 105 0 chr11 132255053 132255167 -16528305 - MIR SINE MIR -109 153 28 230 257 248 20 chr11 132255248 132255349 -16528123 + MIR3 SINE MIR 42 165 -43 266 216 14 40 chr11 132255600 132255674 -16527798 + L2 LINE L2 3242 3313 0 3112 193 63 77 chr11 132256171 132257094 -16526378 - L1ME1 LINE L1 -4 6162 5227 188 33 0 33 chr11 132257094 132257124 -16526348 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2001 125 0 28 chr11 132257126 132257415 -16526057 - AluSq SINE Alu -32 281 1 3112 193 63 77 chr11 132257415 132257707 -16525765 - L1ME1 LINE L1 -940 5226 4980 1305 91 2 0 chr11 132257710 132258258 -16525214 - L1MA2 LINE L1 0 6304 5670 648 311 44 24 chr11 132258999 132259250 -16524222 + MIR SINE MIR 7 262 0 810 300 118 38 chr11 132260240 132260748 -16522724 + L2 LINE L2 2736 3286 -27 551 262 49 11 chr11 132260748 132260931 -16522541 - MLT1L LTR MaLR 0 615 426 194 398 39 16 chr11 132261331 132261459 -16522013 - L2 LINE L2 -4 3309 3179 3923 240 51 20 chr11 132261509 132262467 -16521005 + L1MEc LINE L1 2170 3097 -3118 1589 151 92 0 chr11 132262467 132262739 -16520733 - AluJo SINE Alu -15 297 1 3923 240 51 20 chr11 132262739 132263019 -16520453 + L1MEc LINE L1 3097 3410 -2805 2080 137 3 0 chr11 132263019 132263325 -16520147 + AluSx SINE Alu 1 307 -5 3923 240 51 20 chr11 132263325 132263382 -16520090 + L1MEc LINE L1 3410 3464 -2751 215 255 43 11 chr11 132263410 132263504 -16519968 + (TA)n Simple_repeat Simple_repeat 1 97 0 348 197 0 0 chr11 132263504 132263570 -16519902 + L1MEc LINE L1 3860 3925 -2290 * 2519 191 104 21 chr11 132263562 132263751 -16519721 + L1MC3 LINE L1 6422 6594 -1191 2712 71 8 14 chr11 132263751 132264117 -16519355 - THE1B LTR MaLR 0 364 1 2519 191 104 21 chr11 132264117 132264554 -16518918 + L1MC3 LINE L1 6594 7100 -685 297 163 88 38 chr11 132264559 132264639 -16518833 + MLT1F1 LTR MaLR 43 126 -441 830 175 52 0 chr11 132264639 132264793 -16518679 + L1MD3 LINE L1 7405 7566 -429 * 921 189 177 4 chr11 132264786 132265029 -16518443 + L1M4 LINE L1 4822 5106 -1040 368 219 83 10 chr11 132265032 132265128 -16518344 - MLT1C LTR MaLR -364 103 1 225 336 74 0 chr11 132265724 132265846 -16517626 + L1ME4a LINE L1 5687 5817 -1991 308 219 129 65 chr11 132266086 132266241 -16517231 + L1ME4a LINE L1 5901 6065 -56 2023 145 0 19 chr11 132267278 132267596 -16515876 + AluJo SINE Alu 1 312 0 21 57 0 0 chr11 132268384 132268419 -16515053 + AT_rich Low_complexity Low_complexity 1 35 0 402 285 128 34 chr11 132270216 132270395 -16513077 - MIR SINE MIR -19 243 48 2212 121 0 0 chr11 132271470 132271776 -16511696 + AluSx SINE Alu 1 306 -6 184 387 32 0 chr11 132272378 132272471 -16511001 + L2 LINE L2 2212 2307 -1007 224 196 0 39 chr11 132272586 132272637 -16510835 + (CATATA)n Simple_repeat Simple_repeat 5 53 0 273 266 140 49 chr11 132273944 132274087 -16509385 + MIR SINE MIR 94 249 -13 2309 74 0 0 chr11 132274796 132275103 -16508369 - AluY SINE Alu 0 307 1 24 0 0 0 chr11 132276883 132276907 -16506565 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr11 132276963 132276993 -16506479 + AT_rich Low_complexity Low_complexity 1 30 0 215 225 0 0 chr11 132277748 132277788 -16505684 + CT-rich Low_complexity Low_complexity 4 43 0 225 0 0 0 chr11 132279827 132279852 -16503620 + (T)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr11 132279863 132279886 -16503586 + GC_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr11 132279905 132279932 -16503540 + GC_rich Low_complexity Low_complexity 1 27 0 410 221 28 94 chr11 132280770 132280951 -16502521 - MER112 DNA MER1_type -1 259 91 476 144 0 63 chr11 132281093 132281238 -16502234 - AluSg/x SINE Alu 0 343 206 210 304 54 62 chr11 132281406 132281518 -16501954 + L2 LINE L2 3112 3222 -50 598 216 101 0 chr11 132281722 132281870 -16501602 - MIR SINE MIR -37 225 63 1565 150 205 22 chr11 132281903 132282264 -16501208 - MSTA LTR MaLR -1 427 1 24 0 0 0 chr11 132285138 132285162 -16498310 + AT_rich Low_complexity Low_complexity 1 24 0 1208 156 0 47 chr11 132285166 132285378 -16498094 - AluJ SINE Alu -5 307 106 599 160 123 0 chr11 132285424 132285530 -16497942 - AluJ SINE Alu -193 119 1 22 35 0 0 chr11 132285733 132285762 -16497710 + AT_rich Low_complexity Low_complexity 1 29 0 887 252 24 9 chr11 132285909 132286119 -16497353 - MLT1B LTR MaLR 0 390 178 282 340 68 10 chr11 132286787 132286890 -16496582 + L2 LINE L2 2933 3041 -231 206 343 15 0 chr11 132286959 132287026 -16496446 + L2 LINE L2 3203 3270 -2 364 305 55 23 chr11 132288039 132288167 -16495305 - L2 LINE L2 0 3272 3141 741 177 0 0 chr11 132288348 132288472 -16495000 - AluJ SINE Alu -185 127 4 303 348 36 76 chr11 132289832 132290082 -16493390 - L2 LINE L2 -1 3271 3032 1963 76 16 4 chr11 132290247 132290496 -16492976 - AluSc SINE Alu -20 289 38 1731 124 79 38 chr11 132291089 132291379 -16492093 - AluSx SINE Alu -10 302 1 2795 208 98 37 chr11 132291647 132292545 -16490927 - L1ME2 LINE L1 -9 6155 5202 1883 79 65 18 chr11 132292545 132292823 -16490649 - AluY SINE Alu 0 311 21 2795 208 98 37 chr11 132292823 132292920 -16490552 - L1ME2 LINE L1 -962 5202 5112 227 217 0 0 chr11 132292972 132293018 -16490454 + T-rich Low_complexity Low_complexity 1 46 0 271 262 115 8 chr11 132293020 132293142 -16490330 - L1ME2 LINE L1 -1067 5079 4945 212 137 0 59 chr11 132293193 132293244 -16490228 + (TATATG)n Simple_repeat Simple_repeat 6 53 0 570 227 28 85 chr11 132294873 132295013 -16488459 - MIR SINE MIR -96 166 36 2138 82 0 0 chr11 132295013 132295282 -16488190 - AluSc SINE Alu -4 305 37 570 227 28 85 chr11 132295282 132295317 -16488155 - MIR SINE MIR -226 36 1 1772 152 47 50 chr11 132295736 132295869 -16487603 + MER46B DNA MER2_type 1 9 -2722 931 193 12 0 chr11 132295869 132296040 -16487432 + FAM SINE Alu 2 174 -1 1772 152 47 50 chr11 132296040 132296268 -16487204 + MER46B DNA MER2_type 9 236 0 506 300 55 35 chr11 132296621 132297018 -16486454 + L1ME LINE L1 5271 5675 -446 33 0 0 0 chr11 132297552 132297585 -16485887 + AT_rich Low_complexity Low_complexity 1 33 0 918 207 77 5 chr11 132298049 132298257 -16485215 - MER58A DNA MER1_type -1 223 1 192 288 34 17 chr11 132298439 132298498 -16484974 - MIR3 SINE MIR -24 184 125 185 200 0 86 chr11 132298692 132298762 -16484710 + MIR SINE MIR 86 149 -59 839 235 223 0 chr11 132298932 132299179 -16484293 - AluJo SINE Alu 0 302 1 2240 113 0 3 chr11 132300449 132300760 -16482712 - AluSg SINE Alu 0 310 1 1243 181 121 11 chr11 132301005 132301270 -16482202 + AluSg SINE Alu 1 294 -16 439 292 31 15 chr11 132302092 132302222 -16481250 + L2 LINE L2 3176 3307 -6 25 0 0 0 chr11 132303696 132303721 -16479751 + AT_rich Low_complexity Low_complexity 1 25 0 535 284 40 59 chr11 132303796 132304018 -16479454 - MIR SINE MIR -37 225 8 205 287 0 168 chr11 132304286 132304411 -16479061 - MIR3 SINE MIR -31 177 73 2206 98 0 0 chr11 132304592 132304877 -16478595 + AluSx SINE Alu 1 285 -27 29 28 0 0 chr11 132305035 132305071 -16478401 + AT_rich Low_complexity Low_complexity 1 36 0 314 283 193 0 chr11 132306197 132306363 -16477109 - MER112 DNA MER1_type -40 220 23 216 0 0 0 chr11 132306495 132306519 -16476953 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 510 277 79 6 chr11 132306602 132306779 -16476693 - MIR SINE MIR -2 260 71 205 379 43 26 chr11 132307045 132307161 -16476311 + L2 LINE L2 3126 3243 -29 2065 109 0 14 chr11 132307258 132307543 -16475929 + AluSg SINE Alu 1 281 -29 483 250 76 6 chr11 132307801 132307947 -16475525 - MIR SINE MIR -1 261 105 317 214 133 20 chr11 132308002 132308100 -16475372 - Tigger8 DNA MER2_type -228 438 330 549 205 107 70 chr11 132308668 132308995 -16474477 - L1MC5 LINE L1 -367 7594 7256 2441 73 0 7 chr11 132309097 132309400 -16474072 - AluY SINE Alu -10 301 1 807 241 92 72 chr11 132309404 132309893 -16473579 - L1MC5 LINE L1 -720 7241 6743 1546 135 73 0 chr11 132310123 132310382 -16473090 - MER2 DNA MER2_type -6 339 62 32 43 0 0 chr11 132311051 132311097 -16472375 + AT_rich Low_complexity Low_complexity 1 46 0 2387 148 60 7 chr11 132311181 132311612 -16471860 - L1MB3 LINE L1 -26 6157 5704 945 112 15 0 chr11 132311893 132312027 -16471445 - AluSq/x SINE Alu -177 136 1 506 321 48 24 chr11 132312371 132312409 -16471063 + Tigger8 DNA MER2_type 5 41 -625 381 86 0 0 chr11 132312409 132312467 -16471005 + (TATG)n Simple_repeat Simple_repeat 1 58 0 1406 201 45 4 chr11 132312467 132312736 -16470736 - AluJo SINE Alu -31 281 2 506 321 48 24 chr11 132312736 132312932 -16470540 + Tigger8 DNA MER2_type 41 251 -415 700 192 166 31 chr11 132312932 132313125 -16470347 + MER20 DNA MER1_type 1 219 0 506 321 48 24 chr11 132313125 132313178 -16470294 + Tigger8 DNA MER2_type 251 301 -365 2249 212 72 36 chr11 132314081 132314794 -16468678 - L1M4 LINE L1 -1786 4360 3623 411 73 0 0 chr11 132316012 132316067 -16467405 + (CA)n Simple_repeat Simple_repeat 2 56 0 1403 256 66 47 chr11 132316339 132316606 -16466866 + L2 LINE L2 1245 1505 -1809 2039 141 7 0 chr11 132316606 132316904 -16466568 - AluJb SINE Alu -12 300 1 1403 256 66 47 chr11 132316904 132317151 -16466321 + L2 LINE L2 1505 1769 -1545 531 219 168 59 chr11 132317193 132317295 -16466177 + L2 LINE L2 3046 3135 -178 1243 214 92 9 chr11 132317295 132317612 -16465860 - MER2 DNA MER2_type 0 344 2 531 219 168 59 chr11 132317612 132317747 -16465725 + L2 LINE L2 3135 3309 -4 22 0 0 0 chr11 132317786 132317808 -16465664 + AT_rich Low_complexity Low_complexity 1 22 0 2096 127 3 3 chr11 132319204 132319495 -16463977 + AluSq SINE Alu 1 291 -22 2196 67 11 11 chr11 132319504 132319826 -16463646 + AluY SINE Alu 1 322 0 1965 126 11 0 chr11 132321124 132321410 -16462062 + AluSx SINE Alu 1 289 -23 22 35 0 0 chr11 132321431 132321460 -16462012 + AT_rich Low_complexity Low_complexity 1 29 0 211 373 0 0 chr11 132322062 132322121 -16461351 - L2 LINE L2 -86 3186 3128 303 236 260 8 chr11 132322293 132322416 -16461056 + L2 LINE L2 3160 3313 0 2189 112 3 10 chr11 132323006 132323319 -16460153 + AluY SINE Alu 1 311 0 1689 187 10 10 chr11 132323676 132323981 -16459491 + AluJb SINE Alu 1 305 -7 515 291 108 34 chr11 132324088 132324383 -16459089 - L2 LINE L2 -2968 346 30 377 329 6 18 chr11 132324455 132324619 -16458853 + CT-rich Low_complexity Low_complexity 1 162 0 2366 98 0 0 chr11 132324757 132325064 -16458408 - AluSg SINE Alu -3 307 1 192 286 170 33 chr11 132325485 132325667 -16457805 - L2 LINE L2 -2 3311 3105 570 349 102 36 chr11 132325998 132326302 -16457170 - L2 LINE L2 -2475 839 485 2267 105 0 13 chr11 132326302 132326616 -16456856 + AluSx SINE Alu 1 310 -2 570 349 102 36 chr11 132326616 132326832 -16456640 - L2 LINE L2 -2829 485 285 1520 208 10 3 chr11 132327026 132327314 -16456158 + AluJb SINE Alu 1 290 -22 2402 215 87 4 chr11 132328086 132328602 -16454870 - MLT1F1 LTR MaLR -8 559 1 1558 286 132 17 chr11 132328642 132329330 -16454142 + HAL1 LINE L1 1120 1886 -621 854 231 10 29 chr11 132330299 132330507 -16452965 + AluJo SINE Alu 1 204 -108 692 197 0 61 chr11 132330931 132331087 -16452385 + FLAM_A SINE Alu 1 148 0 24 0 0 0 chr11 132331163 132331187 -16452285 + AT_rich Low_complexity Low_complexity 1 24 0 213 298 130 15 chr11 132332050 132332183 -16451289 - MIR SINE MIR 0 208 71 22 0 0 0 chr11 132332649 132332671 -16450801 + AT_rich Low_complexity Low_complexity 1 22 0 2106 105 10 14 chr11 132333301 132333597 -16449875 - AluSx SINE Alu -17 295 1 10474 126 94 9 chr11 132334477 132336186 -16447286 - Tigger1 DNA MER2_type -563 1855 1 2547 172 19 10 chr11 132336387 132336800 -16446672 + MER47B DNA MER2_type 1 417 -1 2524 73 3 6 chr11 132336831 132337144 -16446328 + AluSp SINE Alu 1 312 -1 2139 123 7 10 chr11 132337884 132338186 -16445286 + AluSx SINE Alu 1 301 -11 2092 136 13 3 chr11 132338312 132338621 -16444851 + AluSx SINE Alu 1 312 0 2133 107 17 3 chr11 132339061 132339350 -16444122 - AluSx SINE Alu -19 293 1 348 289 48 0 chr11 132339602 132339685 -16443787 + MER58A DNA MER1_type 2 88 -19 * 1307 220 188 79 chr11 132339673 132340231 -16443241 - MLT1E1 LTR MaLR -35 619 1 613 167 10 0 chr11 132340254 132340356 -16443116 + MER58A DNA MER1_type 122 224 0 1712 181 26 0 chr11 132341018 132341322 -16442150 - AluJo SINE Alu 0 312 1 819 276 33 0 chr11 132341407 132341588 -16441884 + MER58A DNA MER1_type 11 197 -27 2233 94 0 7 chr11 132342016 132342338 -16441134 - AluSx SINE Alu 0 320 1 201 276 48 133 chr11 132342483 132342588 -16440884 - MER91C DNA MER1_type -14 126 31 680 335 134 29 chr11 132343207 132344202 -16439270 - L2 LINE L2 -5 3308 2189 448 295 26 74 chr11 132344219 132344409 -16439063 + L1ME2 LINE L1 5477 5657 -2151 527 264 115 0 chr11 132344418 132344566 -16438906 + MER58A DNA MER1_type 60 224 0 2159 198 34 24 chr11 132344719 132345215 -16438257 + L1ME2 LINE L1 5663 6163 -1 233 245 61 107 chr11 132345232 132345428 -16438044 + L1MC4 LINE L1 7839 8025 -17 688 287 50 23 chr11 132345444 132345702 -16437770 + L1MC4a LINE L1 5602 5866 -1942 231 203 16 31 chr11 132345842 132345906 -16437566 + (CATA)n Simple_repeat Simple_repeat 2 64 0 407 277 85 58 chr11 132346119 132346249 -16437223 - L2 LINE L2 -1230 2084 1946 2381 78 0 3 chr11 132346249 132346543 -16436929 - AluY SINE Alu -18 293 1 407 277 85 58 chr11 132346543 132346600 -16436872 - L2 LINE L2 -1368 1946 1892 26 0 0 0 chr11 132346734 132346760 -16436712 + AT_rich Low_complexity Low_complexity 1 26 0 26 0 0 0 chr11 132346965 132346991 -16436481 + AT_rich Low_complexity Low_complexity 1 26 0 1465 206 25 0 chr11 132347002 132347284 -16436188 - AluJo SINE Alu -23 289 1 746 196 118 9 chr11 132348503 132348537 -16434935 - MER5C DNA MER1_type 0 324 295 1049 199 0 0 chr11 132348537 132348708 -16434764 - FAM SINE Alu -4 171 1 746 196 118 9 chr11 132348708 132348902 -16434570 - MER5C DNA MER1_type -29 295 71 1932 147 0 10 chr11 132349655 132349961 -16433511 - AluJb SINE Alu -9 303 1 399 281 62 0 chr11 132350083 132350211 -16433261 - L1ME3 LINE L1 -24 6138 6003 351 0 0 0 chr11 132350670 132350709 -16432763 + (TTG)n Simple_repeat Simple_repeat 1 39 0 2191 110 16 7 chr11 132351169 132351478 -16431994 + AluSp SINE Alu 1 312 -1 182 231 0 77 chr11 132351543 132351608 -16431864 - L2 LINE L2 -4 3268 3209 239 302 132 39 chr11 132352625 132352830 -16430642 - L2 LINE L2 -943 2371 2148 180 0 0 0 chr11 132354107 132354127 -16429345 + (TG)n Simple_repeat Simple_repeat 2 21 0 852 258 166 52 chr11 132354146 132354604 -16428868 - L2 LINE L2 0 3313 2804 2559 71 3 0 chr11 132355334 132355644 -16427828 - AluY SINE Alu 0 311 1 2171 82 3 3 chr11 132356049 132356331 -16427141 + AluY SINE Alu 1 282 -29 2136 82 0 4 chr11 132356351 132356619 -16426853 + AluY SINE Alu 1 267 -44 2666 32 0 7 chr11 132356723 132357033 -16426439 - AluY SINE Alu -3 308 1 525 233 265 5 chr11 132358323 132358538 -16424934 - L2 LINE L2 -586 2728 2458 2398 83 3 3 chr11 132359909 132360221 -16423251 + AluSx SINE Alu 1 312 0 240 188 0 0 chr11 132360670 132360718 -16422754 + (TGGG)n Simple_repeat Simple_repeat 2 49 0 251 313 163 30 chr11 132361266 132361707 -16421765 + L2 LINE L2 1814 2313 -1001 2066 133 0 0 chr11 132361741 132362049 -16421423 - AluY SINE Alu -3 308 1 2439 68 3 0 chr11 132362455 132362751 -16420721 + AluY SINE Alu 1 297 -14 620 193 9 0 chr11 132362995 132363104 -16420368 - Tigger3(Golem) DNA MER2_type 0 3029 2920 189 0 0 0 chr11 132363247 132363268 -16420204 + (T)n Simple_repeat Simple_repeat 1 21 0 687 182 0 0 chr11 132363531 132363641 -16419831 - Tigger3(Golem) DNA MER2_type -1 3028 2919 1388 152 18 97 chr11 132363784 132364114 -16419358 - AluJb SINE Alu -8 304 1 2404 63 0 0 chr11 132364152 132364439 -16419033 - AluY SINE Alu -24 287 1 1158 73 0 0 chr11 132364439 132364576 -16418896 - AluSq/x SINE Alu -171 141 5 306 197 152 0 chr11 132364579 132364645 -16418827 - Tigger3(Golem) DNA MER2_type -2952 77 2 516 108 36 0 chr11 132369768 132369851 -16413621 - L1MB8 LINE L1 0 6178 6093 381 153 0 0 chr11 132369856 132369928 -16413544 - L1MB3 LINE L1 -2 6181 6110 225 196 0 0 chr11 132370320 132370366 -16413106 + (TA)n Simple_repeat Simple_repeat 2 47 0 1630 163 28 14 chr11 132371136 132371448 -16412024 - AluJb SINE Alu 0 312 1 1045 153 116 43 chr11 132371448 132371749 -16411723 - Charlie1a DNA MER1_type -26 1429 1107 864 102 0 0 chr11 132371749 132371867 -16411605 - AluSx SINE Alu -11 301 184 449 139 14 14 chr11 132371873 132371945 -16411527 - AluSx SINE Alu -196 116 45 4350 181 87 31 chr11 132371945 132372574 -16410898 - Charlie1a DNA MER1_type -1646 1115 410 2233 87 3 3 chr11 132372574 132372860 -16410612 + AluSc SINE Alu 5 290 -19 4350 181 87 31 chr11 132372860 132373220 -16410252 - Charlie1a DNA MER1_type -2351 410 71 287 40 0 60 chr11 132373229 132373279 -16410193 + (T)n Simple_repeat Simple_repeat 1 47 0 1650 149 7 42 chr11 132373642 132373931 -16409541 - AluJo SINE Alu -33 279 1 379 200 147 0 chr11 132373931 132374006 -16409466 - Charlie1a DNA MER1_type -1369 86 1 546 263 119 0 chr11 132374008 132374168 -16409304 + MIR SINE MIR 14 192 -70 2480 65 3 0 chr11 132374232 132374538 -16408934 - AluY SINE Alu -4 307 1 1748 180 10 0 chr11 132374689 132374984 -16408488 - AluJo SINE Alu -14 298 1 403 295 30 12 chr11 132375620 132375770 -16407702 + MIR3 SINE MIR 39 187 -21 962 188 0 3 chr11 132375883 132376113 -16407359 - AluJb SINE Alu -4 308 1 309 151 0 0 chr11 132376815 132376868 -16406604 + C-rich Low_complexity Low_complexity 5 57 0 2008 124 0 7 chr11 132376868 132377150 -16406322 - AluSx SINE Alu -32 280 1 2062 93 4 4 chr11 132377924 132378254 -16405218 + AluSc SINE Alu 1 330 0 1559 141 31 28 chr11 132378259 132378514 -16404958 + AluJb SINE Alu 1 256 -56 416 290 168 14 chr11 132378542 132378756 -16404716 - MIR SINE MIR 0 262 16 1629 199 45 36 chr11 132379414 132379856 -16403616 + L1MB7 LINE L1 5714 6159 -25 544 251 154 18 chr11 132380038 132380265 -16403207 + MIR SINE MIR 5 262 0 2183 146 0 0 chr11 132380334 132380636 -16402836 - AluSx SINE Alu -10 302 1 2279 114 3 0 chr11 132381239 132381546 -16401926 - AluSx SINE Alu -4 308 1 1823 183 0 3 chr11 132383220 132383531 -16399941 + AluJo SINE Alu 1 310 -2 2235 127 0 0 chr11 132383698 132384005 -16399467 + AluSx SINE Alu 1 307 -5 2274 81 7 14 chr11 132384672 132384968 -16398504 - AluSx SINE Alu -18 294 1 716 245 245 48 chr11 132385481 132385682 -16397790 - L3 LINE CR1 0 1577 1417 2406 82 7 0 chr11 132385682 132385974 -16397498 - AluSx SINE Alu -18 294 1 716 245 245 48 chr11 132385974 132386082 -16397390 - L3 LINE CR1 -160 1417 1207 191 233 0 14 chr11 132386578 132386651 -16396821 + (TA)n Simple_repeat Simple_repeat 2 73 0 223 163 82 0 chr11 132388548 132388597 -16394875 - L2 LINE L2 -1 3271 3219 2210 92 31 3 chr11 132388608 132388902 -16394570 - AluSp SINE Alu -11 302 1 342 354 61 25 chr11 132389338 132389458 -16394014 - L2 LINE L2 -417 2897 2783 2274 71 3 24 chr11 132389458 132389755 -16393717 + AluSc SINE Alu 1 291 -18 342 354 61 25 chr11 132389755 132389911 -16393561 - L2 LINE L2 -531 2783 2611 366 276 19 9 chr11 132390927 132391032 -16392440 - MIR3 SINE MIR -18 190 85 197 248 124 66 chr11 132391203 132391324 -16392148 + MIR SINE MIR 129 256 -6 294 325 8 0 chr11 132391799 132391916 -16391556 + MIR SINE MIR 28 145 -63 257 237 161 11 chr11 132393846 132393939 -16389533 - MIR SINE MIR -79 183 77 421 220 73 18 chr11 132394763 132394872 -16388600 + MIR SINE MIR 32 146 -62 290 180 33 0 chr11 132394873 132394934 -16388538 + MIR SINE MIR 111 173 -89 215 360 79 22 chr11 132396126 132396354 -16387118 - L2 LINE L2 -706 2608 2368 267 253 169 0 chr11 132396659 132396742 -16386730 + L2 LINE L2 3204 3300 -13 327 261 80 42 chr11 132397957 132398132 -16385340 - MIR3 SINE MIR -49 159 19 1862 120 31 21 chr11 132398136 132398427 -16385045 - AluSx SINE Alu -18 294 1 768 246 64 23 chr11 132398680 132398768 -16384704 - MIR SINE MIR 0 262 179 2050 144 31 3 chr11 132398768 132399123 -16384349 + MLT1A1 LTR MaLR 1 365 0 768 246 64 23 chr11 132399123 132399254 -16384218 - MIR SINE MIR -83 179 34 2319 92 0 43 chr11 132399378 132399704 -16383768 - AluSx SINE Alu 0 312 1 1596 175 63 7 chr11 132400575 132400883 -16382589 - AluJb SINE Alu 0 312 1 212 318 23 11 chr11 132401032 132401120 -16382352 - MIR SINE MIR -103 105 17 857 226 53 5 chr11 132401437 132401645 -16381827 - MIR SINE MIR -6 256 39 2427 89 3 0 chr11 132401828 132402132 -16381340 - AluSx SINE Alu -7 305 1 181 213 64 0 chr11 132402384 132402431 -16381041 - L2 LINE L2 0 3272 3223 255 324 29 0 chr11 132403069 132403171 -16380301 - MIR SINE MIR -79 183 79 2354 96 3 3 chr11 132403435 132403736 -16379736 - AluSc SINE Alu -8 301 1 371 322 66 0 chr11 132404728 132404849 -16378623 - MIR3 SINE MIR -48 160 32 458 254 55 18 chr11 132405333 132405498 -16377974 + MIR SINE MIR 42 212 -50 864 198 147 25 chr11 132405519 132405711 -16377761 + L1ME3A LINE L1 5899 6127 -43 1330 164 74 57 chr11 132405711 132406009 -16377463 - AluJb SINE Alu -9 303 1 864 198 147 25 chr11 132406009 132406054 -16377418 + L1ME3A LINE L1 6127 6165 -5 2035 129 3 54 chr11 132406062 132406379 -16377093 + AluSq SINE Alu 1 301 -12 327 179 81 89 chr11 132406514 132406637 -16376835 - MIR SINE MIR -46 162 41 1636 164 39 43 chr11 132407483 132407788 -16375684 - AluJb SINE Alu -8 304 1 1115 90 0 0 chr11 132407788 132407922 -16375550 - AluY SINE Alu -177 134 1 2251 107 5 60 chr11 132408052 132408437 -16375035 - THE1B LTR MaLR 0 364 1 323 300 74 60 chr11 132408491 132408841 -16374631 + L2 LINE L2 2913 3267 -5 575 277 26 13 chr11 132409315 132409470 -16374002 - MIR SINE MIR -50 212 56 283 219 34 0 chr11 132410457 132410535 -16372937 + MIR SINE MIR 72 147 -61 256 239 0 28 chr11 132410599 132410670 -16372802 - L3 LINE CR1 -304 1273 1205 271 209 104 75 chr11 132410931 132411065 -16372407 - MIR SINE MIR -46 216 79 2356 113 0 0 chr11 132411077 132411387 -16372085 - AluSx SINE Alu -2 310 1 234 300 16 123 chr11 132412481 132412734 -16370738 - L2 LINE L2 -108 3164 2939 359 316 14 29 chr11 132412815 132412954 -16370518 - MIR SINE MIR -13 249 113 456 328 141 45 chr11 132413040 132413107 -16370365 - L2 LINE L2 -476 2838 2779 2275 122 3 0 chr11 132413107 132413410 -16370062 + AluSx SINE Alu 1 304 -8 456 328 141 45 chr11 132413410 132414208 -16369264 - L2 LINE L2 -535 2779 1890 493 225 27 0 chr11 132414393 132414504 -16368968 + MER81 DNA DNA 1 114 0 898 201 76 5 chr11 132414527 132414711 -16368761 + MER63A DNA MER1_type 10 206 -4 189 107 0 0 chr11 132414893 132414921 -16368551 + (GGGA)n Simple_repeat Simple_repeat 3 30 0 276 250 0 0 chr11 132415149 132415205 -16368267 + MIR SINE MIR 158 213 -49 506 323 77 113 chr11 132415583 132416385 -16367087 + L3 LINE CR1 117 889 -688 2245 115 23 0 chr11 132419849 132420154 -16363318 + AluSx SINE Alu 1 312 0 743 213 63 11 chr11 132420323 132420497 -16362975 + AluJb SINE Alu 119 301 -11 227 326 109 84 chr11 132420620 132420905 -16362567 + L2 LINE L2 2904 3195 -77 1822 166 24 7 chr11 132421009 132421299 -16362173 - AluJb SINE Alu -17 295 1 4536 166 23 14 chr11 132421317 132422350 -16361122 + L1M2 LINE L1 4497 5532 -745 301 346 28 0 chr11 132422461 132422568 -16360904 - MIR SINE MIR -78 184 75 433 114 53 0 chr11 132422569 132422635 -16360837 + L1PA14 LINE L1 5518 5596 -572 907 113 60 0 chr11 132422635 132422782 -16360690 + L1PA14 LINE L1 6001 6159 -2 433 114 53 0 chr11 132422782 132422805 -16360667 + L1PA14 LINE L1 5596 5616 -552 2171 92 20 14 chr11 132422805 132423099 -16360373 + AluSx SINE Alu 1 296 -16 3504 174 41 18 chr11 132423104 132423835 -16359637 + L1MA10 LINE L1 5586 6333 -1 2183 107 0 0 chr11 132423840 132424121 -16359351 - AluSx SINE Alu -11 301 21 294 322 44 8 chr11 132424476 132424604 -16358868 - MIR SINE MIR -54 154 48 290 274 103 26 chr11 132424844 132424961 -16358511 - L1ME4a LINE L1 -1 6120 5995 429 301 55 7 chr11 132425024 132425170 -16358302 - MIR SINE MIR -96 166 14 183 265 20 0 chr11 132428276 132428325 -16355147 - MIR SINE MIR -58 150 101 2180 115 0 30 chr11 132428612 132428916 -16354556 - AluSg SINE Alu -15 295 1 278 136 0 34 chr11 132429431 132429490 -16353982 + MLT1K LTR MaLR 508 564 -24 574 295 25 20 chr11 132429491 132429691 -16353781 - L2 LINE L2 -537 2777 2577 940 204 6 3 chr11 132429692 132429917 -16353555 - AluJb SINE Alu -25 287 2 231 36 0 0 chr11 132430283 132430311 -16353161 + (A)n Simple_repeat Simple_repeat 1 28 0 749 254 99 0 chr11 132430337 132430538 -16352934 + MIR SINE MIR 36 256 -6 2291 79 0 10 chr11 132430571 132430855 -16352617 + AluSc SINE Alu 1 282 -22 186 71 0 0 chr11 132430855 132430883 -16352589 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 2213 96 10 10 chr11 132432324 132432617 -16350855 - AluSx SINE Alu -19 293 1 791 224 102 5 chr11 132432861 132433081 -16350391 + MIR SINE MIR 19 255 -7 498 281 168 15 chr11 132434362 132434565 -16348907 - MIR SINE MIR -24 238 5 312 281 196 53 chr11 132434591 132434933 -16348539 - L2 LINE L2 -75 3197 2807 225 228 44 66 chr11 132435012 132435148 -16348324 - L2 LINE L2 -719 2595 2463 2719 32 0 7 chr11 132436926 132437236 -16346236 - AluY SINE Alu -3 308 1 488 227 259 5 chr11 132438526 132438746 -16344726 - L2 LINE L2 -586 2728 2453 2463 96 0 0 chr11 132440112 132440424 -16343048 + AluSx SINE Alu 1 312 0 240 188 0 0 chr11 132440873 132440921 -16342551 + (TGGG)n Simple_repeat Simple_repeat 2 49 0 264 332 168 13 chr11 132441469 132441849 -16341623 + L2 LINE L2 1814 2252 -1062 554 291 14 36 chr11 132441893 132441944 -16341528 + L2 LINE L2 1038 1089 -2225 2460 91 0 0 chr11 132441944 132442253 -16341219 - AluSx SINE Alu -3 309 1 554 291 14 36 chr11 132442253 132442421 -16341051 + L2 LINE L2 1089 1252 -2062 4163 141 89 58 chr11 132442565 132443161 -16340311 - MER21A LTR ERV1 -3 928 352 279 0 0 0 chr11 132443161 132443192 -16340280 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2005 143 0 0 chr11 132443193 132443472 -16340000 - AluSx SINE Alu -33 279 1 4163 141 89 58 chr11 132443472 132443760 -16339712 - MER21A LTR ERV1 -578 353 14 870 303 138 24 chr11 132443761 132444590 -16338882 + L2 LINE L2 1414 2336 -978 2526 64 0 0 chr11 132444698 132444996 -16338476 - AluY SINE Alu 0 311 14 360 320 65 30 chr11 132445366 132445566 -16337906 - MIR SINE MIR -8 254 48 1993 122 17 24 chr11 132445697 132445993 -16337479 - AluSx SINE Alu -18 294 1 416 238 47 76 chr11 132449213 132449385 -16334087 - MIR3 SINE MIR -21 187 21 239 209 0 0 chr11 132449749 132449792 -16333680 + CT-rich Low_complexity Low_complexity 1 43 0 256 125 83 0 chr11 132450316 132450364 -16333108 - L2 LINE L2 0 3313 3262 352 279 174 0 chr11 132450380 132450541 -16332931 - MIR SINE MIR 0 262 74 466 192 75 8 chr11 132451423 132451543 -16331929 + L2 LINE L2 3141 3268 -4 186 313 48 24 chr11 132451961 132452044 -16331428 - MIR3 SINE MIR -27 181 97 285 330 249 0 chr11 132452906 132453103 -16330369 + L3 LINE CR1 1332 1577 0 928 145 0 0 chr11 132453914 132454045 -16329427 + FRAM SINE Alu 17 147 -29 304 279 0 23 chr11 132454045 132454131 -16329341 + L1MC4 LINE L1 6617 6700 -1342 240 259 0 0 chr11 132454131 132454212 -16329260 + (TAGG)n Simple_repeat Simple_repeat 3 83 0 181 57 57 0 chr11 132454214 132454249 -16329223 + GA-rich Low_complexity Low_complexity 1 37 0 309 291 61 34 chr11 132454249 132454397 -16329075 + L1MCa LINE L1 2226 2377 -4049 867 269 40 0 chr11 132454696 132454919 -16328553 + MIR SINE MIR 20 251 -11 3817 243 71 21 chr11 132455345 132456592 -16326880 + L2 LINE L2 1706 3015 -298 6700 72 9 4 chr11 132456664 132458097 -16325375 - L1PA7 LINE L1 0 6154 4634 2246 122 7 0 chr11 132458097 132458401 -16325071 + AluSq SINE Alu 1 306 -7 6700 72 9 4 chr11 132458401 132459022 -16324450 - L1PA7 LINE L1 -1520 4634 4018 583 239 148 19 chr11 132459039 132459248 -16324224 + L2 LINE L2 3078 3313 0 546 350 62 26 chr11 132459860 132460200 -16323272 - L3 LINE CR1 -152 1425 1074 367 291 161 5 chr11 132461331 132461530 -16321942 + MIR SINE MIR 33 262 0 21 0 0 0 chr11 132461530 132461551 -16321921 + AT_rich Low_complexity Low_complexity 1 21 0 589 210 134 0 chr11 132461647 132461804 -16321668 + MIR SINE MIR 84 261 -1 1560 236 135 58 chr11 132461833 132462317 -16321155 - MLT1E2 LTR MaLR -5 619 72 2788 131 20 9 chr11 132462317 132462769 -16320703 - MSTB2 LTR MaLR 0 457 1 1560 236 135 58 chr11 132462769 132462847 -16320625 - MLT1E2 LTR MaLR -552 72 1 410 304 168 5 chr11 132463820 132464034 -16319438 - MIR SINE MIR -11 251 3 2297 122 0 3 chr11 132464582 132464893 -16318579 - AluSg SINE Alu 0 310 1 227 27 0 54 chr11 132464897 132464934 -16318538 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 332 211 256 15 chr11 132465050 132465183 -16318289 - MIR SINE MIR -1 261 97 332 279 90 96 chr11 132465884 132466045 -16317427 + L2 LINE L2 2896 3056 -216 2079 138 0 17 chr11 132466045 132466343 -16317129 - AluSx SINE Alu -19 293 1 332 279 90 96 chr11 132466343 132466557 -16316915 + L2 LINE L2 3056 3269 -3 182 242 263 20 chr11 132467266 132467365 -16316107 + MIR3 SINE MIR 82 204 -4 195 395 136 0 chr11 132468794 132468941 -16314531 + L2 LINE L2 2887 3053 -219 823 304 133 15 chr11 132469110 132469591 -16313881 - L2 LINE L2 -643 2671 2134 1925 172 7 0 chr11 132469998 132470301 -16313171 + AluJo SINE Alu 1 305 -7 2339 46 46 0 chr11 132470672 132470952 -16312520 - AluY SINE Alu -18 293 1 469 252 166 7 chr11 132471184 132471335 -16312137 + MER5A DNA MER1_type 12 186 -3 292 277 12 36 chr11 132471394 132471477 -16311995 - MER5A DNA MER1_type -68 121 41 345 280 134 0 chr11 132471958 132472115 -16311357 + MIR SINE MIR 79 256 -6 337 325 19 28 chr11 132473068 132473273 -16310199 - MIR3 SINE MIR -57 205 2 588 312 64 47 chr11 132473273 132473616 -16309856 - L1ME LINE L1 -5166 953 605 253 271 51 0 chr11 132474178 132474291 -16309181 - L1ME LINE L1 -5960 159 48 225 330 68 10 chr11 132474890 132474993 -16308479 - L2 LINE L2 -49 3223 3115 325 299 52 104 chr11 132475422 132475903 -16307569 + L2 LINE L2 2817 3272 0 239 398 39 31 chr11 132476785 132477041 -16306431 - L3 LINE CR1 -270 1307 1050 532 329 29 9 chr11 132477291 132477501 -16305971 - MIR SINE MIR -6 256 43 194 301 86 71 chr11 132478312 132478581 -16304891 - L2 LINE L2 -50 3222 2950 2258 113 0 0 chr11 132478694 132478987 -16304485 - AluSq SINE Alu -20 293 1 2212 133 3 0 chr11 132479050 132479359 -16304113 - AluSx SINE Alu -2 310 1 185 182 0 0 chr11 132479416 132479449 -16304023 - L2 LINE L2 -672 2642 2610 192 77 0 0 chr11 132479451 132479477 -16303995 + (TCCA)n Simple_repeat Simple_repeat 3 28 0 336 275 33 0 chr11 132479487 132479578 -16303894 - L2 LINE L2 -9 3263 3170 227 314 89 8 chr11 132479661 132479785 -16303687 - L2 LINE L2 -781 2533 2400 357 323 104 0 chr11 132480045 132480185 -16303287 - L2 LINE L2 -982 2332 2176 323 349 24 35 chr11 132480185 132480354 -16303118 + MIR3 SINE MIR 3 169 -39 190 261 0 0 chr11 132482362 132482408 -16301064 - L2 LINE L2 -219 3053 3008 2230 119 3 0 chr11 132483289 132483582 -16299890 + AluSx SINE Alu 1 294 -18 504 249 113 5 chr11 132484039 132484260 -16299212 - MER20B DNA MER1_type -6 777 533 334 262 49 8 chr11 132484338 132484460 -16299012 + MIR SINE MIR 66 192 -70 1011 280 113 42 chr11 132485357 132485487 -16297985 - L2 LINE L2 -1 3312 3193 447 19 0 0 chr11 132485487 132485539 -16297933 + (TG)n Simple_repeat Simple_repeat 2 53 0 1011 280 113 42 chr11 132485539 132485967 -16297505 - L2 LINE L2 -120 3193 2701 470 256 44 19 chr11 132485970 132486130 -16297342 - L1MA9 LINE L1 -30 6282 6119 305 276 0 0 chr11 132486142 132486218 -16297254 + Tigger3(Golem) DNA MER2_type 2 77 -2952 438 201 15 118 chr11 132486221 132486425 -16297047 - AluSq SINE Alu -11 302 120 326 288 33 46 chr11 132486455 132486695 -16296777 - AluSg SINE Alu -29 271 35 785 241 6 0 chr11 132486822 132486996 -16296476 - FAM SINE Alu 0 175 1 1854 169 7 10 chr11 132486996 132487303 -16296169 - AluJo SINE Alu -6 306 1 369 294 97 63 chr11 132487699 132487743 -16295729 - L3b LINE CR1 -88 1495 1454 1840 170 7 0 chr11 132487743 132488056 -16295416 + AluJo SINE Alu 1 315 0 369 294 97 63 chr11 132488056 132488222 -16295250 - L3b LINE CR1 -129 1454 1270 2087 148 0 0 chr11 132488222 132488533 -16294939 - AluSx SINE Alu 0 311 1 369 294 97 63 chr11 132488533 132488588 -16294884 - L3b LINE CR1 -313 1270 1218 341 301 87 35 chr11 132489192 132489365 -16294107 - MIR SINE MIR -2 260 79 1440 257 108 45 chr11 132490075 132490299 -16293173 - HAL1 LINE L1 -16 2491 2283 1660 150 18 25 chr11 132490299 132490585 -16292887 - AluJb SINE Alu -12 300 17 1440 257 108 45 chr11 132490585 132491120 -16292352 - HAL1 LINE L1 -224 2283 1684 254 293 0 0 chr11 132491224 132491306 -16292166 - HAL1 LINE L1 -716 1791 1710 227 318 0 0 chr11 132491361 132491424 -16292048 - MIR SINE MIR -127 81 19 1394 192 29 56 chr11 132491797 132492172 -16291300 - MLT1A1 LTR MaLR 0 365 1 245 29 0 29 chr11 132492817 132492852 -16290620 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 384 310 42 0 chr11 132494185 132494327 -16289145 - MIR SINE MIR 0 262 115 * 424 310 203 12 chr11 132494326 132494568 -16288904 + L2 LINE L2 2985 3272 0 192 200 0 0 chr11 132494701 132494736 -16288736 - L2 LINE L2 -9 3304 3270 847 210 25 0 chr11 132495662 132495819 -16287653 + FRAM SINE Alu 1 161 -15 186 167 0 0 chr11 132497896 132497932 -16285540 + (TG)n Simple_repeat Simple_repeat 1 36 0 207 269 0 0 chr11 132498445 132498497 -16284975 + L2 LINE L2 3213 3264 -8 182 250 0 0 chr11 132498735 132498775 -16284697 + MIR SINE MIR 45 84 -178 333 191 16 0 chr11 132498932 132498995 -16284477 - L2 LINE L2 -19 3294 3231 432 248 159 35 chr11 132499177 132499548 -16283924 - L2 LINE L2 -312 3001 2563 2155 180 82 7 chr11 132499591 132500040 -16283432 - L1ME1 LINE L1 -3 6163 5681 2033 121 33 0 chr11 132500042 132500412 -16283060 - AluSx SINE Alu 0 379 1 975 189 0 0 chr11 132500415 132500579 -16282893 - FRAM SINE Alu -13 163 1 1459 194 65 22 chr11 132500579 132501068 -16282404 - L1ME1 LINE L1 -475 5691 5189 2147 136 11 3 chr11 132501244 132501597 -16281875 - L1MB2 LINE L1 -2 6169 5814 2568 65 0 3 chr11 132501646 132501952 -16281520 - AluY SINE Alu -6 305 1 269 151 19 0 chr11 132502107 132502160 -16281312 + (TA)n Simple_repeat Simple_repeat 1 54 0 5703 82 14 0 chr11 132502161 132503385 -16280087 - L1PA15 LINE L1 -13 6152 4964 5739 163 75 10 chr11 132503392 132504132 -16279340 - L1PA15 LINE L1 -1328 4818 3974 2296 126 81 2 chr11 132504132 132504343 -16279129 - MSTA LTR MaLR 0 428 235 189 74 0 0 chr11 132504343 132504370 -16279102 + (CAGAGA)n Simple_repeat Simple_repeat 3 29 0 2296 126 81 2 chr11 132504370 132504555 -16278917 - MSTA LTR MaLR -193 235 1 5739 163 75 10 chr11 132504555 132504977 -16278495 - L1PA15 LINE L1 -2172 3974 3581 1100 144 0 0 chr11 132504974 132505155 -16278317 - L1MB2 LINE L1 -340 5831 5651 * 186 43 0 0 chr11 132505167 132505190 -16278282 + (TC)n Simple_repeat Simple_repeat 2 24 0 1049 152 6 0 chr11 132505190 132505354 -16278118 - AluSg/x SINE Alu -7 305 141 797 178 192 64 chr11 132505359 132505640 -16277832 - L1ME1 LINE L1 -945 5201 4885 629 295 98 7 chr11 132505640 132505935 -16277537 - L2 LINE L2 -775 2539 2218 273 322 59 8 chr11 132506023 132506262 -16277210 - L2 LINE L2 -213 3059 2809 367 264 269 6 chr11 132507218 132507385 -16276087 + MIR SINE MIR 21 231 -31 874 209 5 26 chr11 132508540 132508731 -16274741 - MER20 DNA MER1_type -27 192 6 457 149 0 69 chr11 132509032 132509119 -16274353 - MER5A DNA MER1_type -108 81 1 251 218 218 18 chr11 132509726 132509836 -16273636 - MIR3 SINE MIR -11 197 66 202 280 0 40 chr11 132509996 132510096 -16273376 + (CCCTAA)n Simple_repeat Simple_repeat 5 100 0 259 293 37 0 chr11 132510363 132510445 -16273027 + L2 LINE L2 3229 3313 0 293 321 107 7 chr11 132510611 132510751 -16272721 - MIR SINE MIR -12 250 97 1813 307 135 32 chr11 132512397 132512746 -16270726 + L2 LINE L2 1265 1577 -1737 2244 104 7 3 chr11 132512746 132513045 -16270427 + AluSx SINE Alu 1 300 -12 1813 307 135 32 chr11 132513045 132514042 -16269430 + L2 LINE L2 1577 2470 -844 1722 162 22 18 chr11 132514042 132514320 -16269152 + AluJb SINE Alu 2 280 -32 239 0 32 0 chr11 132514320 132514351 -16269121 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 1813 307 135 32 chr11 132514351 132514450 -16269022 + L2 LINE L2 2469 2861 -453 332 206 0 27 chr11 132514455 132514528 -16268944 + MLT1L LTR MaLR 18 88 -527 226 316 13 0 chr11 132514909 132514985 -16268487 + MLT1L LTR MaLR 532 608 -7 446 317 229 0 chr11 132514991 132515363 -16268109 + L2 LINE L2 2851 3307 -6 368 322 199 16 chr11 132515386 132515684 -16267788 + L2 LINE L2 2824 3206 -66 2240 124 3 0 chr11 132515684 132515991 -16267481 - AluSx SINE Alu -4 308 1 368 322 199 16 chr11 132515991 132516068 -16267404 + L2 LINE L2 3206 3268 -4 278 310 99 35 chr11 132516062 132516204 -16267268 - L2 LINE L2 0 3313 3163 * 2375 100 0 0 chr11 132516569 132516870 -16266602 - AluSx SINE Alu -11 301 1 243 267 237 0 chr11 132517076 132517211 -16266261 + MIR SINE MIR 44 210 -52 574 299 103 0 chr11 132518035 132518249 -16265223 - MIR SINE MIR -7 255 20 278 333 171 0 chr11 132518348 132518471 -16265001 - MLT1H LTR MaLR 0 549 406 460 308 6 13 chr11 132518711 132518867 -16264605 - MLT1H LTR MaLR -376 173 19 1866 145 35 3 chr11 132520627 132520916 -16262556 + AluJb SINE Alu 1 298 -14 2351 106 0 0 chr11 132520970 132521271 -16262201 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr11 132521494 132521515 -16261957 + AT_rich Low_complexity Low_complexity 1 21 0 295 292 45 0 chr11 132522333 132522422 -16261050 - MIR SINE MIR -80 182 90 2058 147 0 0 chr11 132522564 132522849 -16260623 - AluJo SINE Alu -27 285 1 667 212 15 0 chr11 132523145 132523282 -16260190 - MER63A DNA MER1_type -27 183 45 684 183 56 0 chr11 132523591 132523733 -16259739 + MER20 DNA MER1_type 36 185 -34 2702 42 0 6 chr11 132523735 132524046 -16259426 + AluY SINE Alu 1 309 -2 2252 88 47 0 chr11 132524191 132524488 -16258984 - AluSx SINE Alu -1 311 1 484 263 0 8 chr11 132524579 132524697 -16258775 + MIR3 SINE MIR 61 177 -31 301 294 28 9 chr11 132525612 132525721 -16257751 - MIR3 SINE MIR 0 208 98 425 306 53 0 chr11 132525902 132526052 -16257420 + MIR SINE MIR 29 186 -62 250 316 61 56 chr11 132526250 132526446 -16257026 + L2 LINE L2 2990 3186 -86 274 328 55 8 chr11 132527812 132527940 -16255532 + MIR SINE MIR 21 154 -108 198 203 0 68 chr11 132527989 132528048 -16255424 - MIR3 SINE MIR -144 64 10 306 253 44 0 chr11 132528280 132528371 -16255101 + L3 LINE CR1 1483 1577 0 255 225 11 56 chr11 132528834 132528923 -16254549 - LTR16C LTR ERVL -12 479 395 358 168 253 0 chr11 132528954 132529049 -16254423 - LTR16C LTR ERVL -87 404 286 2481 68 0 3 chr11 132529393 132529718 -16253754 + AluY SINE Alu 1 311 0 408 321 74 5 chr11 132529733 132529923 -16253549 - MIR SINE MIR -12 250 48 326 229 222 7 chr11 132530472 132530616 -16252856 + MIR3 SINE MIR 23 197 -11 397 264 18 9 chr11 132531872 132531982 -16251490 + L2 LINE L2 3198 3308 -5 277 30 0 0 chr11 132532025 132532058 -16251414 + (TTTTA)n Simple_repeat Simple_repeat 3 110 0 1048 219 0 0 chr11 132532058 132532246 -16251226 - AluJ SINE Alu -1 329 110 1855 147 108 6 chr11 132532255 132532588 -16250884 + MSTA LTR MaLR 60 426 -2 8787 171 36 4 chr11 132532590 132534190 -16249282 + MSTA-int LTR MaLR 1 1651 0 2161 129 99 0 chr11 132534190 132534555 -16248917 + MSTA LTR MaLR 1 401 -27 286 79 0 0 chr11 132535154 132535192 -16248280 + MSTA LTR MaLR 387 424 -4 799 136 0 0 chr11 132535192 132535310 -16248162 - AluJ SINE Alu -184 118 1 27 0 0 0 chr11 132535359 132535386 -16248086 + AT_rich Low_complexity Low_complexity 1 27 0 747 279 56 13 chr11 132535482 132535715 -16247757 - MIR SINE MIR -9 253 11 375 303 97 0 chr11 132536305 132536460 -16247012 + MIR3 SINE MIR 31 200 -8 2355 110 0 0 chr11 132536566 132536876 -16246596 - AluSx SINE Alu -2 310 1 779 250 11 0 chr11 132536934 132537110 -16246362 - MIR SINE MIR -72 190 13 824 235 83 14 chr11 132537281 132537688 -16245784 - MLT1C LTR MaLR 0 467 1 601 266 62 69 chr11 132537690 132537820 -16245652 - L1MC4 LINE L1 -980 7062 6933 1724 122 63 28 chr11 132537820 132538107 -16245365 - AluJo SINE Alu -15 297 1 601 266 62 69 chr11 132538107 132538251 -16245221 - L1MC4 LINE L1 -1109 6933 6790 491 204 35 9 chr11 132538251 132538364 -16245108 + MER112 DNA MER1_type 139 254 -6 342 139 13 25 chr11 132538599 132538678 -16244794 + CT-rich Low_complexity Low_complexity 1 78 0 1982 100 38 0 chr11 132539676 132539937 -16243535 + AluSx SINE Alu 1 271 -41 206 225 0 0 chr11 132539962 132540002 -16243470 + GA-rich Low_complexity Low_complexity 3 42 0 336 244 119 25 chr11 132542019 132542179 -16241293 + MIR3 SINE MIR 17 191 -17 302 318 212 0 chr11 132542541 132542711 -16240761 + MIR SINE MIR 11 216 -46 228 287 123 25 chr11 132543553 132543675 -16239797 - L2 LINE L2 -1 3312 3179 591 259 31 0 chr11 132543901 132544063 -16239409 + MIR SINE MIR 48 214 -48 260 289 48 0 chr11 132545521 132545604 -16237868 + MIR3 SINE MIR 90 176 -32 448 307 127 0 chr11 132545659 132545848 -16237624 + MIR SINE MIR 47 259 -3 348 259 191 8 chr11 132545958 132546089 -16237383 - MER5A DNA MER1_type -31 158 4 289 328 104 8 chr11 132546574 132546708 -16236764 + MIR SINE MIR 16 162 -100 1494 203 47 6 chr11 132546708 132547029 -16236443 + MLT1A1 LTR MaLR 1 334 -31 256 244 97 51 chr11 132547605 132547755 -16235717 - MIR SINE MIR -42 166 21 559 286 78 26 chr11 132548639 132548870 -16234602 + MIR SINE MIR 8 250 -12 185 365 0 0 chr11 132548997 132549060 -16234412 - MIR SINE MIR -110 98 36 1283 245 111 18 chr11 132550466 132550907 -16232565 - L1ME3A LINE L1 -8 6162 5681 228 284 30 0 chr11 132551044 132551111 -16232361 + L2 LINE L2 3244 3312 -1 2342 99 0 0 chr11 132551234 132551528 -16231944 + AluSg SINE Alu 1 294 -16 261 216 34 23 chr11 132551744 132551832 -16231640 + GA-rich Low_complexity Low_complexity 2 90 0 2094 135 0 0 chr11 132552553 132552855 -16230617 - AluSx SINE Alu 0 302 1 814 191 64 97 chr11 132552864 132553131 -16230341 - MIR SINE MIR -2 260 3 2563 71 10 0 chr11 132553144 132553452 -16230020 - AluY SINE Alu 0 311 1 2076 109 14 3 chr11 132553606 132553900 -16229572 + AluSq SINE Alu 17 313 0 636 351 61 13 chr11 132554188 132554581 -16228891 + L2 LINE L2 2383 2794 -520 862 117 0 0 chr11 132554718 132554846 -16228626 - MER41A LTR ERV1 0 554 427 23 0 0 0 chr11 132555143 132555166 -16228306 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr11 132555189 132555210 -16228262 + AT_rich Low_complexity Low_complexity 1 21 0 2264 112 0 10 chr11 132555383 132555687 -16227785 - AluSx SINE Alu -11 301 1 3460 107 18 21 chr11 132556020 132556579 -16226893 - MER41B LTR ERV1 -77 558 2 202 288 106 0 chr11 132556583 132556649 -16226823 + L2 LINE L2 2988 3060 -253 273 335 39 71 chr11 132557131 132557313 -16226159 + MIR3 SINE MIR 18 193 -15 833 254 128 59 chr11 132557781 132558186 -16225286 - L2 LINE L2 -4 3309 2877 431 323 50 15 chr11 132558380 132558578 -16224894 + MIR SINE MIR 52 256 -6 265 257 29 0 chr11 132558600 132558670 -16224802 + MIR SINE MIR 89 160 -102 306 0 0 0 chr11 132558766 132558800 -16224672 + (TG)n Simple_repeat Simple_repeat 1 34 0 299 25 25 0 chr11 132558799 132558839 -16224633 + (GA)n Simple_repeat Simple_repeat 1 41 0 * 22 0 0 0 chr11 132558889 132558911 -16224561 + AT_rich Low_complexity Low_complexity 1 22 0 284 167 0 0 chr11 132558951 132558999 -16224473 + L2 LINE L2 3224 3271 -1 710 197 99 10 chr11 132559100 132559297 -16224175 - MIR SINE MIR -11 251 40 439 62 0 0 chr11 132559597 132559661 -16223811 + L1PA5 LINE L1 6091 6154 0 396 219 12 24 chr11 132559747 132559916 -16223556 + (TATG)n Simple_repeat Simple_repeat 1 167 0 491 326 86 20 chr11 132560950 132561195 -16222277 - MIR SINE MIR 0 262 2 196 273 18 82 chr11 132561363 132561473 -16221999 - MIR SINE MIR -2 260 158 474 279 66 30 chr11 132561616 132561813 -16221659 - MIR SINE MIR -56 206 3 293 384 63 10 chr11 132562129 132562335 -16221137 + L2 LINE L2 2693 2909 -405 222 312 32 0 chr11 132563430 132563523 -16219949 - MIR SINE MIR -111 151 56 270 56 0 0 chr11 132563562 132563598 -16219874 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 339 339 120 53 chr11 132565148 132565505 -16217967 + L2 LINE L2 2887 3267 -5 391 282 0 30 chr11 132565616 132565747 -16217725 - MIR SINE MIR -56 206 80 244 265 108 20 chr11 132566041 132566143 -16217329 - MIR SINE MIR -111 151 41 451 271 104 52 chr11 132566769 132566961 -16216511 + MIR SINE MIR 60 261 -1 435 208 10 20 chr11 132566974 132567075 -16216397 - MIR3 SINE MIR -3 205 106 189 94 0 0 chr11 132567836 132567868 -16215604 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 332 274 95 0 chr11 132567872 132567967 -16215505 - L2 LINE L2 -16 3297 3194 420 271 39 8 chr11 132568425 132568554 -16214918 - L2 LINE L2 -1 3271 3139 459 274 68 14 chr11 132568959 132569105 -16214367 + MIR SINE MIR 45 198 -64 2092 117 3 0 chr11 132569106 132569417 -16214055 - AluSx SINE Alu 0 312 1 562 279 112 0 chr11 132569425 132569604 -16213868 - MIR SINE MIR -15 247 49 296 212 15 15 chr11 132569819 132569885 -16213587 - L2 LINE L2 0 3313 3248 707 314 96 38 chr11 132570147 132570749 -16212723 - L2 LINE L2 -465 2849 2213 332 299 38 3 chr11 132570998 132571123 -16212349 + MIR SINE MIR 12 139 -69 2243 95 25 0 chr11 132571333 132571617 -16211855 + AluSx SINE Alu 1 291 -21 500 229 34 51 chr11 132571887 132572062 -16211410 - L2 LINE L2 0 3313 3142 367 241 139 0 chr11 132572235 132572343 -16211129 - L2 LINE L2 -1 3312 3190 2467 217 64 92 chr11 132572573 132573463 -16210009 - L1ME3A LINE L1 -6 6164 5300 333 0 0 0 chr11 132573482 132573519 -16209953 + (T)n Simple_repeat Simple_repeat 1 37 0 400 202 32 11 chr11 132573653 132573747 -16209725 + MER20 DNA MER1_type 123 218 -1 245 275 24 174 chr11 132574172 132574310 -16209162 - MER5B DNA MER1_type -2 176 78 1494 176 109 0 chr11 132574310 132574566 -16208906 - AluJo SINE Alu -27 285 2 245 275 24 174 chr11 132574566 132574634 -16208838 - MER5B DNA MER1_type -100 78 1 319 222 37 0 chr11 132574827 132574908 -16208564 + MIR SINE MIR 106 189 -73 189 383 56 9 chr11 132575042 132575149 -16208323 - L2 LINE L2 -32 3240 3129 240 276 0 0 chr11 132576000 132576058 -16207414 - L2 LINE L2 -11 3302 3245 245 296 0 12 chr11 132576502 132576583 -16206889 - L2 LINE L2 -639 2675 2596 321 277 71 9 chr11 132576663 132576775 -16206697 - LTR16C LTR ERVL -3 488 370 551 341 77 26 chr11 132576903 132577510 -16205962 - L2 LINE L2 -829 2485 1848 195 333 53 8 chr11 132577523 132577655 -16205817 - L2 LINE L2 -570 2744 2607 478 195 0 0 chr11 132577688 132577770 -16205702 + FLAM SINE Alu 52 133 -10 493 210 0 72 chr11 132578711 132578849 -16204623 - FLAM_A SINE Alu -5 128 1 234 0 0 0 chr11 132578949 132578975 -16204497 + (T)n Simple_repeat Simple_repeat 1 26 0 352 281 0 104 chr11 132580189 132580353 -16203119 - MIR3 SINE MIR -24 184 38 200 276 253 0 chr11 132580566 132580653 -16202819 + L3 LINE CR1 507 615 -962 1861 91 3 59 chr11 132580655 132580942 -16202530 - AluSc SINE Alu 0 309 39 216 0 0 0 chr11 132580942 132580966 -16202506 + (T)n Simple_repeat Simple_repeat 1 24 0 2460 79 0 25 chr11 132632163 132632505 -16150967 - AluSc SINE Alu 0 334 1 271 256 51 51 chr11 132632782 132632919 -16150553 - MLT1J LTR MaLR -339 172 36 252 303 113 51 chr11 132633764 132633959 -16149513 + L2 LINE L2 2539 2745 -569 223 384 199 0 chr11 132634461 132634607 -16148865 + L2 LINE L2 3097 3271 -1 187 308 113 42 chr11 132634794 132634996 -16148476 - L2 LINE L2 -272 3000 2791 191 310 186 38 chr11 132635007 132635426 -16148046 - L2 LINE L2 -629 2685 2205 2135 189 52 10 chr11 132635566 132636227 -16147245 - L1MC/D LINE L1 -743 5403 4831 246 264 50 50 chr11 132636439 132636560 -16146912 - L2 LINE L2 -197 3075 2955 267 31 0 0 chr11 132636572 132636604 -16146868 + (TG)n Simple_repeat Simple_repeat 2 33 0 460 276 172 79 chr11 132636635 132637683 -16145789 - L2 LINE L2 -458 2856 1712 1753 202 41 14 chr11 132638738 132639105 -16144367 + MLT1B LTR MaLR 3 379 -11 303 290 149 104 chr11 132639855 132640076 -16143396 - L2 LINE L2 0 3272 3042 1463 173 109 13 chr11 132640113 132640352 -16143120 + MER2 DNA MER2_type 1 278 -66 2264 85 0 19 chr11 132640352 132640669 -16142803 - AluY SINE Alu 0 311 1 1463 173 109 13 chr11 132640669 132640742 -16142730 + MER2 DNA MER2_type 278 343 -1 883 222 29 14 chr11 132642289 132642496 -16140976 - MLT1A2 LTR MaLR -10 364 155 1890 116 36 20 chr11 132642694 132642997 -16140475 - AluSq SINE Alu 0 313 6 202 27 0 54 chr11 132642999 132643036 -16140436 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1807 108 7 18 chr11 132643036 132643313 -16140159 - AluSx SINE Alu -29 283 10 600 211 84 7 chr11 132643317 132643459 -16140013 - MLT1A2 LTR MaLR -219 171 19 471 266 69 23 chr11 132644059 132644232 -16139240 + MIR SINE MIR 15 195 -67 2008 130 0 19 chr11 132644378 132644694 -16138778 - AluSp SINE Alu -3 310 1 2244 152 64 56 chr11 132645469 132645774 -16137698 - L1MB8 LINE L1 -5 6173 5861 2002 117 7 3 chr11 132645774 132646065 -16137407 - AluSx SINE Alu -20 292 1 2244 152 64 56 chr11 132646065 132646274 -16137198 - L1MB8 LINE L1 -317 5861 5655 266 279 178 31 chr11 132646307 132646436 -16137036 - MIR SINE MIR -4 258 111 401 273 48 30 chr11 132646595 132646760 -16136712 - MIR SINE MIR -57 205 38 264 137 0 0 chr11 132647621 132647672 -16135800 + (TTCA)n Simple_repeat Simple_repeat 4 54 0 312 216 37 187 chr11 132647788 132647973 -16135499 + MIR SINE MIR 17 151 -111 2182 112 0 0 chr11 132647973 132648277 -16135195 - AluSx SINE Alu -8 304 1 312 216 37 187 chr11 132648277 132648359 -16135113 + MIR SINE MIR 151 244 -18 406 252 245 5 chr11 132648362 132648544 -16134928 - MIR SINE MIR -11 251 27 335 296 16 56 chr11 132649121 132649246 -16134226 - L2 LINE L2 -1 3312 3193 376 257 106 9 chr11 132649547 132649660 -16133812 - L2 LINE L2 0 3313 3190 732 297 11 0 chr11 132650446 132650621 -16132851 + MIR SINE MIR 4 180 -82 393 143 0 0 chr11 132652335 132652391 -16131081 - MIR3 SINE MIR -38 170 115 251 258 152 37 chr11 132652471 132652715 -16130757 - L2 LINE L2 -161 3111 2840 515 221 168 13 chr11 132652729 132652878 -16130594 + MIR SINE MIR 21 192 -70 180 263 275 0 chr11 132652916 132652996 -16130476 + MIR SINE MIR 149 250 -12 291 279 208 52 chr11 132654110 132654264 -16129208 - L2 LINE L2 -1 3271 3094 1908 147 3 3 chr11 132654323 132654629 -16128843 + AluJo SINE Alu 1 306 -6 456 213 98 33 chr11 132654719 132654841 -16128631 - MER46C DNA MER2_type -207 131 2 203 277 21 32 chr11 132654994 132655088 -16128384 - L2 LINE L2 -212 3060 2968 295 155 17 0 chr11 132655097 132655155 -16128317 - Charlie4a DNA MER1_type -37 471 413 1738 169 82 23 chr11 132655201 132655592 -16127880 - Charlie4a DNA MER1_type -94 414 1 470 281 60 24 chr11 132655967 132656134 -16127338 + MIR SINE MIR 79 251 -11 309 283 39 22 chr11 132656216 132656396 -16127076 - L1ME4a LINE L1 -213 5908 5726 276 337 43 11 chr11 132656428 132656520 -16126952 - L2 LINE L2 -9 3304 3210 692 270 11 17 chr11 132656812 132656986 -16126486 + MIR SINE MIR 3 175 -87 824 224 99 5 chr11 132657062 132657254 -16126218 - MIR SINE MIR -34 228 19 464 279 15 47 chr11 132657717 132657929 -16125543 + MIR3 SINE MIR 8 214 -48 356 278 22 83 chr11 132658611 132658791 -16124681 - L2 LINE L2 -3 3310 3142 2035 91 21 17 chr11 132658861 132659148 -16124324 + AluSx SINE Alu 5 292 -20 211 298 20 40 chr11 132659347 132659498 -16123974 + CT-rich Low_complexity Low_complexity 2 149 0 293 299 118 24 chr11 132660658 132660785 -16122687 - MIR3 SINE MIR -53 155 17 531 327 55 52 chr11 132661209 132661812 -16121660 - L2 LINE L2 0 3272 2649 209 339 8 63 chr11 132661812 132661939 -16121533 - L2 LINE L2 -958 2356 2237 997 141 12 6 chr11 132663076 132663239 -16120233 - AluSg/x SINE Alu -32 280 117 217 282 52 5 chr11 132664337 132664427 -16119045 + MIR SINE MIR 76 165 -60 355 291 53 33 chr11 132665075 132665226 -16118246 + L3b LINE CR1 1224 1377 -206 227 380 0 0 chr11 132665668 132665739 -16117733 + L3b LINE CR1 1380 1450 -133 453 289 61 28 chr11 132666136 132666316 -16117156 + MIR SINE MIR 15 200 -62 488 45 15 0 chr11 132667725 132667792 -16115680 + (TTCA)n Simple_repeat Simple_repeat 1 68 0 2548 166 88 8 chr11 132668165 132668653 -16114819 - MER74A LTR ERVL -30 528 2 517 296 150 0 chr11 132668679 132668892 -16114580 - MIR SINE MIR -10 252 8 21 0 0 0 chr11 132668965 132668986 -16114486 + AT_rich Low_complexity Low_complexity 1 21 0 1987 86 45 24 chr11 132669106 132669396 -16114076 + AluSx SINE Alu 1 296 -16 285 298 0 9 chr11 132669934 132670048 -16113424 - HAL1b LINE L1 -710 638 526 219 271 0 0 chr11 132670218 132670266 -16113206 + MIR SINE MIR 58 105 -103 294 266 11 43 chr11 132670291 132670385 -16113087 - MIR SINE MIR -75 133 43 324 218 24 40 chr11 132670565 132670585 -16112887 - L1MA10 LINE L1 0 6334 6315 1568 202 44 0 chr11 132670585 132670902 -16112570 - L1ME1 LINE L1 -8 6158 5828 956 181 0 11 chr11 132670906 132671083 -16112389 - FRAM SINE Alu -1 175 1 618 229 0 0 chr11 132671086 132671208 -16112264 - L1ME1 LINE L1 -347 5819 5698 2609 224 42 28 chr11 132671227 132671967 -16111505 + MER20B DNA MER1_type 34 783 0 2437 173 36 5 chr11 132672107 132672553 -16110919 - LOR1b LTR ERV1 0 461 2 1564 282 99 45 chr11 132672770 132673559 -16109913 - L2 LINE L2 -251 3062 2222 309 281 81 75 chr11 132674476 132674636 -16108836 + L1MDa LINE L1 1239 1399 -5141 695 324 45 35 chr11 132674644 132675215 -16108257 + HAL1b LINE L1 62 638 -710 16107 137 33 18 chr11 132675386 132676847 -16106625 - L1MA2 LINE L1 0 7723 6286 1701 180 0 10 chr11 132676847 132677147 -16106325 + AluJb SINE Alu 5 301 -11 16107 137 33 18 chr11 132677147 132678885 -16104587 - L1MA2 LINE L1 -1437 6286 4577 1920 123 7 10 chr11 132678885 132679201 -16104271 - AluSg SINE Alu 0 315 1 16107 137 33 18 chr11 132679201 132680507 -16102965 - L1MA2 LINE L1 -3146 4577 3293 2229 100 0 7 chr11 132680507 132680808 -16102664 - AluSg SINE Alu -11 299 1 16107 137 33 18 chr11 132680808 132683272 -16100200 - L1MA2 LINE L1 -4430 3293 533 198 0 0 0 chr11 132683533 132683555 -16099917 + (TC)n Simple_repeat Simple_repeat 1 22 0 1756 209 147 78 chr11 132683573 132684410 -16099062 + L1MC5 LINE L1 6633 7527 -434 518 255 38 52 chr11 132684500 132684712 -16098760 + L1ME3A LINE L1 5962 6170 0 875 268 101 31 chr11 132684728 132685172 -16098300 - L2 LINE L2 -1082 2232 1758 383 296 74 0 chr11 132685980 132686088 -16097384 + MIR SINE MIR 117 232 -30 519 239 166 31 chr11 132687873 132688036 -16095436 - MIR SINE MIR -17 245 61 213 39 0 0 chr11 132688044 132688070 -16095402 + (T)n Simple_repeat Simple_repeat 1 26 0 2293 79 7 7 chr11 132688197 132688502 -16094970 - AluSc SINE Alu -4 305 1 258 389 69 0 chr11 132688791 132688922 -16094550 - L2 LINE L2 -86 3186 3047 998 80 90 37 chr11 132688943 132688990 -16094482 + L1PA14 LINE L1 5271 5314 -847 2145 114 0 0 chr11 132688990 132689288 -16094184 + AluSx SINE Alu 3 300 -12 998 80 90 37 chr11 132689288 132689428 -16094044 + L1PA14 LINE L1 5314 5468 -693 356 115 0 0 chr11 132689428 132689505 -16093967 - Alu SINE Alu 0 313 237 4985 98 1 20 chr11 132689507 132689875 -16093597 + L1PA14 LINE L1 5461 5811 -350 2231 96 3 0 chr11 132689875 132690177 -16093295 + AluSg SINE Alu 1 303 -7 4985 98 1 20 chr11 132690177 132690522 -16092950 + L1PA14 LINE L1 5811 6161 0 225 132 0 0 chr11 132690559 132690602 -16092870 + MIR SINE MIR 42 83 -179 352 302 31 0 chr11 132690686 132690782 -16092690 + MIR SINE MIR 66 164 -98 414 256 184 8 chr11 132692316 132692550 -16090922 - L1ME4a LINE L1 -249 5872 5598 280 287 198 12 chr11 132692898 132693065 -16090407 + MIR SINE MIR 58 255 -7 223 329 0 0 chr11 132693192 132693262 -16090210 + MIR SINE MIR 79 148 -60 213 146 0 24 chr11 132693336 132693377 -16090095 + (TAGG)n Simple_repeat Simple_repeat 2 41 0 245 291 13 25 chr11 132693828 132693907 -16089565 + MIR SINE MIR 43 120 -88 690 242 38 0 chr11 132696935 132697092 -16086380 - MIR3 SINE MIR -17 191 29 207 0 0 0 chr11 132697275 132697298 -16086174 + (T)n Simple_repeat Simple_repeat 1 23 0 400 266 7 84 chr11 132697578 132697681 -16085791 + MIR SINE MIR 3 92 -170 1839 132 0 36 chr11 132697681 132697985 -16085487 - AluSx SINE Alu -19 293 1 400 266 7 84 chr11 132697985 132698035 -16085437 + MIR SINE MIR 92 144 -118 412 298 135 24 chr11 132698077 132698285 -16085187 - MIR SINE MIR -1 261 31 22 0 0 0 chr11 132698750 132698772 -16084700 + AT_rich Low_complexity Low_complexity 1 22 0 414 0 0 0 chr11 132700614 132700660 -16082812 + (TG)n Simple_repeat Simple_repeat 1 46 0 340 266 73 20 chr11 132700710 132700819 -16082653 + MIR SINE MIR 39 150 -66 189 273 39 78 chr11 132700927 132701004 -16082468 - L2 LINE L2 -2 3311 3238 3323 173 17 30 chr11 132701092 132701351 -16082121 - L1MB7 LINE L1 0 6184 5923 1771 130 65 0 chr11 132701351 132701628 -16081844 - AluSg SINE Alu -15 295 1 3323 173 17 30 chr11 132701628 132702057 -16081415 - L1MB7 LINE L1 -261 5923 5505 1151 131 31 0 chr11 132702058 132702322 -16081150 - L1MB7 LINE L1 -742 5442 5171 310 290 79 61 chr11 132702428 132702642 -16080830 - L2 LINE L2 -1 3271 3054 1582 139 24 44 chr11 132702650 132702944 -16080528 + AluJb SINE Alu 10 297 -15 242 28 0 28 chr11 132702952 132702988 -16080484 + (TAA)n Simple_repeat Simple_repeat 3 37 0 512 272 51 25 chr11 132703163 132703321 -16080151 - MIR SINE MIR -72 190 29 514 262 44 33 chr11 132704623 132704833 -16078639 + MIR SINE MIR 34 246 -16 288 155 0 52 chr11 132705757 132705815 -16077657 - MER103 DNA DNA -10 156 102 677 260 29 100 chr11 132706191 132706541 -16076931 - L2 LINE L2 -20 3252 2928 404 289 46 66 chr11 132706542 132706739 -16076733 - MLT1L LTR MaLR -3 612 420 238 274 48 24 chr11 132706889 132706973 -16076499 - MLT1K LTR MaLR -346 242 157 186 103 0 0 chr11 132706978 132707007 -16076465 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 295 125 0 0 chr11 132707008 132707048 -16076424 - MLT1L LTR MaLR -429 186 147 531 176 0 0 chr11 132707048 132707133 -16076339 - MER58B DNA MER1_type 0 341 257 21 0 0 0 chr11 132707148 132707169 -16076303 + AT_rich Low_complexity Low_complexity 1 21 0 1460 210 68 79 chr11 132707169 132707673 -16075799 - L1MA9 LINE L1 -38 6274 5777 359 234 26 13 chr11 132707680 132707757 -16075715 - L1MCa LINE L1 -4354 2072 1995 32854 105 9 57 chr11 132707765 132714224 -16069248 - L1PA7 LINE L1 -2 6152 12 9323 180 25 21 chr11 132714236 132716691 -16066781 - L1MA9 LINE L1 -527 5785 3320 1040 174 46 107 chr11 132716697 132716978 -16066494 - MER58B DNA MER1_type -77 264 1 1589 198 86 26 chr11 132717966 132718305 -16065167 + MLT1A1 LTR MaLR 1 359 -6 3836 183 14 22 chr11 132718313 132719049 -16064423 + MLT1A1-int LTR MaLR 2 731 -1004 743 310 98 43 chr11 132719104 132719452 -16064020 + MLT1A1-int LTR MaLR 975 1341 -394 572 265 50 28 chr11 132719499 132719529 -16063943 - MLT1A1 LTR MaLR 0 365 337 197 33 33 0 chr11 132719529 132719559 -16063913 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 572 265 50 28 chr11 132719559 132719709 -16063763 - MLT1A1 LTR MaLR -28 337 181 203 246 0 82 chr11 132719720 132719781 -16063691 - L2 LINE L2 -20 3293 3238 209 232 0 72 chr11 132720005 132720074 -16063398 + GA-rich Low_complexity Low_complexity 1 64 0 218 312 21 32 chr11 132720197 132720290 -16063182 - L2 LINE L2 -3 3269 3178 533 320 95 9 chr11 132720331 132720562 -16062910 - MIR SINE MIR 0 262 12 2294 253 60 29 chr11 132720635 132721391 -16062081 + L1MEd LINE L1 1 779 -5340 191 282 114 46 chr11 132721469 132721600 -16061872 - L2 LINE L2 -183 3089 2950 1981 141 69 37 chr11 132721603 132721638 -16061834 - MLT2D LTR ERVL 0 414 382 180 77 0 0 chr11 132721638 132721664 -16061808 + (TG)n Simple_repeat Simple_repeat 1 26 0 1981 141 69 37 chr11 132721664 132722005 -16061467 - MLT2D LTR ERVL -32 382 26 361 217 85 19 chr11 132722674 132722780 -16060692 + MIR3 SINE MIR 11 123 -85 180 320 67 0 chr11 132723060 132723135 -16060337 - MIR SINE MIR -129 133 54 1546 213 98 40 chr11 132723856 132724354 -16059118 - MLT1F LTR MaLR -10 532 6 235 289 106 19 chr11 132724479 132724583 -16058889 + L2 LINE L2 2772 2884 -430 702 301 45 39 chr11 132724769 132724968 -16058504 - L2 LINE L2 0 3313 3110 2185 110 0 7 chr11 132724968 132725276 -16058196 + AluSx SINE Alu 1 306 -6 702 301 45 39 chr11 132725276 132725431 -16058041 - L2 LINE L2 -203 3110 2957 231 314 57 73 chr11 132725438 132725562 -16057910 + L2 LINE L2 3115 3236 -36 226 260 31 62 chr11 132726901 132726997 -16056475 + MIR SINE MIR 79 171 -91 223 293 53 13 chr11 132727186 132727261 -16056211 + MIR SINE MIR 19 96 -112 266 254 36 64 chr11 132727328 132727438 -16056034 + MIR SINE MIR 106 212 -50 3503 119 80 31 chr11 132727466 132728028 -16055444 - L1MB3 LINE L1 -2 6181 5648 219 103 0 0 chr11 132728028 132728067 -16055405 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2250 73 0 3 chr11 132728069 132728357 -16055115 - AluY SINE Alu -24 287 1 3503 119 80 31 chr11 132728357 132728432 -16055040 - L1MB3 LINE L1 -535 5648 5510 234 265 0 0 chr11 132728432 132728500 -16054972 + T-rich Low_complexity Low_complexity 1 68 0 288 95 0 0 chr11 132728503 132728545 -16054927 - L1MB3 LINE L1 -685 5486 5445 218 208 0 57 chr11 132728609 132728662 -16054810 + MER5A DNA MER1_type 95 144 -45 1661 185 0 3 chr11 132728670 132728967 -16054505 - AluJo SINE Alu -16 296 1 303 167 0 0 chr11 132728970 132729018 -16054454 + MER5A DNA MER1_type 130 177 -12 456 297 162 28 chr11 132729105 132729596 -16053876 + L2 LINE L2 2732 3291 -22 2486 53 0 0 chr11 132729600 132729899 -16053573 - AluY SINE Alu -12 299 1 547 137 34 94 chr11 132730097 132730214 -16053258 + MER20 DNA MER1_type 1 110 -109 513 229 83 73 chr11 132730210 132730402 -16053070 - MLT1A1 LTR MaLR -170 195 2 * 344 207 49 0 chr11 132730403 132730485 -16052987 + MER20 DNA MER1_type 119 204 -15 199 211 14 14 chr11 132730696 132730767 -16052705 + CT-rich Low_complexity Low_complexity 2 72 0 232 282 28 106 chr11 132732122 132732264 -16051208 + L2 LINE L2 3138 3268 -4 1019 193 72 59 chr11 132734174 132734350 -16049122 + MER33 DNA MER1_type 1 173 -2412 1657 167 6 41 chr11 132734350 132734667 -16048805 + AluJb SINE Alu 1 306 -6 1019 193 72 59 chr11 132734667 132734725 -16048747 + MER33 DNA MER1_type 173 229 -2356 2057 99 7 0 chr11 132734725 132735077 -16048395 - AluSx SINE Alu 0 354 1 1019 193 72 59 chr11 132735077 132735146 -16048326 + MER33 DNA MER1_type 229 310 -14 342 67 0 0 chr11 132735150 132735195 -16048277 + (T)n Simple_repeat Simple_repeat 1 45 0 2688 45 0 3 chr11 132935304 132935612 -15847860 - AluY SINE Alu -4 307 1 345 258 61 22 chr11 132935693 132935867 -15847605 + MIR SINE MIR 34 216 -46 646 271 57 24 chr11 132935957 132936167 -15847305 + MIR SINE MIR 43 259 -3 546 325 30 71 chr11 132937231 132937695 -15845777 - L2 LINE L2 -23 3249 2805 1233 183 42 4 chr11 132937774 132938015 -15845457 - MIR SINE MIR -4 258 9 254 299 75 35 chr11 132938063 132938237 -15845235 + L2 LINE L2 1783 1963 -1351 660 246 65 10 chr11 132938353 132938552 -15844920 + MIR SINE MIR 37 246 -16 766 225 120 5 chr11 132938976 132939176 -15844296 + MIR SINE MIR 40 262 0 307 349 9 0 chr11 132939282 132939388 -15844084 - MIR SINE MIR -106 156 50 504 156 0 0 chr11 132940483 132940573 -15842899 + (CA)n Simple_repeat Simple_repeat 2 91 0 501 196 126 21 chr11 132941030 132941173 -15842299 + MIR SINE MIR 32 189 -73 186 400 0 0 chr11 132941211 132941286 -15842186 + L2 LINE L2 2657 2731 -583 2310 93 3 7 chr11 132941303 132941603 -15841869 - AluSx SINE Alu -13 299 1 530 230 158 9 chr11 132941607 132941928 -15841544 - Charlie4a DNA MER1_type -6 502 61 267 103 0 0 chr11 132941928 132941967 -15841505 + (T)n Simple_repeat Simple_repeat 1 39 0 21 57 0 0 chr11 132941985 132942020 -15841452 + GC_rich Low_complexity Low_complexity 1 35 0 193 306 42 14 chr11 132943210 132943282 -15840190 + L2 LINE L2 2702 2775 -539 191 232 0 158 chr11 132944637 132944732 -15838740 + MIR SINE MIR 112 191 -71 203 288 17 0 chr11 132945027 132945086 -15838386 + C-rich Low_complexity Low_complexity 4 63 0 2316 118 3 0 chr11 132945866 132946170 -15837302 - AluSq SINE Alu -8 305 1 2953 206 48 6 chr11 132946546 132947173 -15836299 - MER82 DNA MER2_type 0 653 1 598 285 43 14 chr11 132947438 132947645 -15835827 - L3 LINE CR1 -88 1489 1277 307 232 0 14 chr11 132948049 132948118 -15835354 - L2 LINE L2 -4 3309 3242 362 333 150 11 chr11 132948129 132948396 -15835076 - L2 LINE L2 0 3313 3010 787 267 62 5 chr11 132948770 132948980 -15834492 + MIR SINE MIR 40 261 -1 285 244 11 33 chr11 132949036 132949126 -15834346 - L2 LINE L2 -1 3271 3184 709 211 58 43 chr11 132949175 132949383 -15834089 + MER112 DNA MER1_type 44 254 -6 288 0 0 0 chr11 132950075 132950107 -15833365 + (T)n Simple_repeat Simple_repeat 1 32 0 216 0 0 0 chr11 132950341 132950365 -15833107 + (A)n Simple_repeat Simple_repeat 1 24 0 187 243 0 0 chr11 132950381 132950418 -15833054 + L2 LINE L2 3225 3261 -11 694 286 70 0 chr11 132951431 132951644 -15831828 + MIR SINE MIR 9 236 -26 627 306 55 55 chr11 132952428 132952846 -15830626 - L2 LINE L2 -25 3288 2871 531 267 89 30 chr11 132953482 132953684 -15829788 - MIR SINE MIR -10 252 39 245 355 129 31 chr11 132953726 132954161 -15829311 + L2 LINE L2 2205 2596 -676 921 189 22 0 chr11 132954161 132954346 -15829126 - MER5A DNA MER1_type 0 189 1 245 355 129 31 chr11 132954346 132954680 -15828792 + L2 LINE L2 2596 3047 -225 482 266 112 75 chr11 132954682 132954923 -15828549 + MIR SINE MIR 13 262 0 305 288 144 8 chr11 132955182 132955300 -15828172 - MER91A DNA MER1_type -61 135 2 226 281 70 65 chr11 132956241 132956440 -15827032 + L2 LINE L2 3073 3272 0 189 0 0 0 chr11 132956649 132956670 -15826802 + (A)n Simple_repeat Simple_repeat 1 21 0 2139 138 6 0 chr11 132956679 132956990 -15826482 - AluSq SINE Alu 0 313 1 242 261 92 0 chr11 132957106 132957171 -15826301 - MIR SINE MIR -107 101 31 306 280 74 51 chr11 132957260 132957431 -15826041 - MIR SINE MIR -57 205 35 304 303 0 0 chr11 132957642 132957718 -15825754 + MIR SINE MIR 47 122 -140 195 42 0 0 chr11 132957720 132957744 -15825728 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 196 339 118 31 chr11 132957796 132957923 -15825549 + MIR SINE MIR 115 252 -10 476 300 19 43 chr11 132958448 132958658 -15824814 + MIR SINE MIR 1 205 -57 676 298 64 71 chr11 132958669 132958954 -15824518 - L2 LINE L2 -3 3269 2984 661 264 77 5 chr11 132958954 132959162 -15824310 - MER58A DNA MER1_type 0 224 2 676 298 64 71 chr11 132959162 132959584 -15823888 - L2 LINE L2 -288 2984 2556 214 299 58 11 chr11 132959580 132959667 -15823805 - MIR SINE MIR -85 123 33 * 273 352 19 0 chr11 132960549 132960657 -15822815 + MIR SINE MIR 46 155 -107 1024 222 0 10 chr11 132960716 132960919 -15822553 - MER63A DNA MER1_type 0 210 10 310 189 0 0 chr11 132961012 132961065 -15822407 - MER5A DNA MER1_type -74 115 63 269 130 278 0 chr11 132961112 132961166 -15822306 - MER5A DNA MER1_type -113 76 8 544 241 37 37 chr11 132961284 132961446 -15822026 - MIR SINE MIR -51 211 50 350 242 92 33 chr11 132961489 132961609 -15821863 + MER91A DNA MER1_type 70 196 0 474 307 108 9 chr11 132962719 132962931 -15820541 + MIR SINE MIR 20 252 -10 320 251 1 58 chr11 132963323 132963442 -15820030 + MIR SINE MIR 33 146 -62 216 179 0 0 chr11 132964069 132964108 -15819364 + (TATG)n Simple_repeat Simple_repeat 2 40 0 900 157 0 0 chr11 132964120 132964254 -15819218 + FLAM_C SINE Alu 1 134 -9 254 167 0 0 chr11 132964392 132964440 -15819032 + L1MB1 LINE L1 6093 6140 -28 1937 98 113 4 chr11 132964440 132964715 -15818757 + AluSg1 SINE Alu 1 305 -4 2292 119 3 0 chr11 132964853 132965155 -15818317 - AluSx SINE Alu -9 303 1 726 333 80 22 chr11 132965319 132965730 -15817742 + L2 LINE L2 2874 3308 -5 1002 215 0 15 chr11 132965862 132966067 -15817405 + MIR SINE MIR 61 262 0 26 0 0 0 chr11 132966093 132966119 -15817353 + AT_rich Low_complexity Low_complexity 1 26 0 2375 105 3 10 chr11 132966436 132966750 -15816722 - AluSx SINE Alu 0 312 1 534 222 32 104 chr11 132967785 132968006 -15815466 + L1ME3A LINE L1 5954 6158 -12 568 257 62 0 chr11 132968566 132968725 -15814747 + MIR SINE MIR 35 197 -65 2621 49 0 3 chr11 132968727 132969033 -15814439 + AluY SINE Alu 1 305 -6 180 0 0 0 chr11 132969189 132969209 -15814263 + (A)n Simple_repeat Simple_repeat 1 20 0 256 119 0 0 chr11 132969209 132969251 -15814221 + L1MB1 LINE L1 6126 6167 -1 439 198 50 0 chr11 132969346 132969447 -15814025 - MIR SINE MIR -78 184 79 376 226 14 14 chr11 132969529 132969629 -15813843 - MIR SINE MIR -62 146 55 183 42 0 0 chr11 132969639 132969663 -15813809 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 2172 124 7 13 chr11 132970720 132971026 -15812446 + AluSx SINE Alu 1 304 -8 192 315 19 0 chr11 132971352 132971406 -15812066 - L2 LINE L2 -31 3241 3187 759 296 44 28 chr11 132972215 132972603 -15810869 - L2 LINE L2 0 3313 2920 399 293 53 57 chr11 132973161 132973424 -15810048 + L2 LINE L2 2916 3177 -95 224 241 19 0 chr11 132977406 132977460 -15806012 + (TTCA)n Simple_repeat Simple_repeat 2 56 0 464 278 68 12 chr11 132978219 132978381 -15805091 - MIR SINE MIR -44 218 48 434 287 90 0 chr11 132979351 132979473 -15803999 - L2 LINE L2 -3 3269 3137 570 274 11 23 chr11 132979911 132980086 -15803386 - MIR3 SINE MIR -13 195 23 208 368 0 21 chr11 132980089 132980184 -15803288 + MIR SINE MIR 21 113 -149 330 26 0 0 chr11 132980248 132980287 -15803185 + (CA)n Simple_repeat Simple_repeat 2 40 0 249 261 171 51 chr11 132981434 132981610 -15801862 + L3b LINE CR1 1303 1499 -84 1606 196 75 13 chr11 132981697 132982069 -15801403 + MSTD LTR MaLR 1 395 -1 223 311 20 74 chr11 132982636 132982784 -15800688 - L2 LINE L2 -187 3085 2946 2658 36 3 0 chr11 132983062 132983363 -15800109 - AluY SINE Alu -9 302 1 2588 78 0 7 chr11 132983387 132983696 -15799776 + AluSx SINE Alu 1 307 -5 506 304 84 16 chr11 132983913 132984163 -15799309 - L2 LINE L2 -782 2532 2266 301 267 112 47 chr11 132984320 132984552 -15798920 - L2 LINE L2 -1347 1967 1721 489 202 139 46 chr11 132984861 132985034 -15798438 - MIR SINE MIR -49 213 25 217 280 20 0 chr11 132985186 132985236 -15798236 + MIR3 SINE MIR 128 178 -30 21 0 0 0 chr11 132985683 132985704 -15797768 + AT_rich Low_complexity Low_complexity 1 21 0 490 258 239 0 chr11 132986115 132986278 -15797194 - MIR SINE MIR 0 262 61 264 365 47 0 chr11 132986599 132986769 -15796703 - L2 LINE L2 -576 2738 2561 524 288 60 16 chr11 132987596 132987780 -15795692 - MIR SINE MIR -35 227 36 226 329 51 13 chr11 132988270 132988349 -15795123 + L2 LINE L2 3153 3234 -38 2173 125 9 0 chr11 132988380 132988716 -15794756 + MER46B DNA MER2_type 11 224 -12 2493 76 0 3 chr11 132988791 132989094 -15794378 + AluSp SINE Alu 1 302 -11 33 66 0 0 chr11 132989201 132989262 -15794210 + GC_rich Low_complexity Low_complexity 1 61 0 225 0 0 0 chr11 132989281 132989306 -15794166 + (A)n Simple_repeat Simple_repeat 1 25 0 455 263 26 0 chr11 132990201 132990315 -15793157 - MIR3 SINE MIR -4 204 88 2050 88 4 8 chr11 132990378 132990639 -15792833 + AluSx SINE Alu 36 295 -17 186 171 0 0 chr11 132991121 132991162 -15792310 + CT-rich Low_complexity Low_complexity 1 41 0 196 264 0 19 chr11 132991843 132991896 -15791576 - MIR SINE MIR -140 68 17 2340 109 0 3 chr11 132992111 132992413 -15791059 - AluSx SINE Alu -11 301 1 571 298 5 42 chr11 132993866 132994057 -15789415 - MER5A DNA MER1_type -3 186 3 224 295 48 57 chr11 132994085 132994190 -15789282 - MIR SINE MIR -56 152 49 297 273 13 0 chr11 132994227 132994304 -15789168 + L3b LINE CR1 1311 1388 -195 248 288 83 61 chr11 132994531 132994663 -15788809 + MIR3 SINE MIR 41 175 -33 188 388 50 0 chr11 132994668 132994748 -15788724 + L2 LINE L2 3188 3271 -1 2192 114 0 0 chr11 132994774 132995071 -15788401 + AluSg SINE Alu 1 297 -13 381 311 26 36 chr11 132996524 132996545 -15786927 - MIR SINE MIR -63 145 125 2142 186 37 20 chr11 132996545 132997002 -15786470 + MLT1C LTR MaLR 1 465 -2 381 311 26 36 chr11 132997002 132997157 -15786315 - MIR SINE MIR -83 125 2 212 300 7 45 chr11 132997214 132997348 -15786124 - MIR SINE MIR -70 192 36 1587 188 58 17 chr11 132997818 132998180 -15785292 + MLT2C1 LTR ERVL 1 377 -20 396 0 0 0 chr11 132998182 132998226 -15785246 + (CA)n Simple_repeat Simple_repeat 2 45 0 271 226 0 0 chr11 132998385 132998438 -15785034 - L2 LINE L2 -3 3310 3258 393 173 19 10 chr11 132999214 132999318 -15784154 + CT-rich Low_complexity Low_complexity 1 105 0 477 214 294 20 chr11 132999812 133000013 -15783459 + MIR SINE MIR 6 261 -1 779 159 116 0 chr11 133001455 133001593 -15781879 + FRAM SINE Alu 1 154 -12 21 0 0 0 chr11 133001593 133001614 -15781858 + AT_rich Low_complexity Low_complexity 1 21 0 2369 105 0 0 chr11 133002197 133002493 -15780979 + AluSg SINE Alu 1 296 -14 346 316 43 56 chr11 133002748 133002982 -15780490 - MIR SINE MIR 0 262 32 777 286 20 0 chr11 133003908 133004104 -15779368 - MIR SINE MIR -61 201 2 250 274 16 16 chr11 133004889 133004951 -15778521 + MIR SINE MIR 92 153 -55 205 256 61 49 chr11 133006681 133006763 -15776709 - MIR3 SINE MIR -2 206 124 718 283 75 0 chr11 133006794 133007034 -15776438 - Charlie8 DNA MER1_type -2157 260 3 191 255 21 0 chr11 133007051 133007098 -15776374 - MIR SINE MIR -82 126 79 464 279 37 37 chr11 133007274 133007435 -15776037 + MIR SINE MIR 22 182 -80 206 135 0 27 chr11 133008104 133008141 -15775331 + (AGGGGG)n Simple_repeat Simple_repeat 3 38 0 444 19 0 0 chr11 133009858 133009911 -15773561 + (CA)n Simple_repeat Simple_repeat 2 54 0 357 326 90 0 chr11 133010170 133010314 -15773158 + MER5B DNA MER1_type 19 175 -3 559 236 16 8 chr11 133010766 133010889 -15772583 + MER5B DNA MER1_type 7 130 -48 630 263 80 0 chr11 133010962 133011137 -15772335 + MER5A DNA MER1_type 1 189 0 2092 130 0 13 chr11 133011279 133011580 -15771892 - AluJb SINE Alu -15 297 1 252 244 67 118 chr11 133011669 133011788 -15771684 - MIR3 SINE MIR -48 160 48 315 0 0 0 chr11 133012667 133012702 -15770770 + (TG)n Simple_repeat Simple_repeat 2 36 0 229 284 58 65 chr11 133014196 133014351 -15769121 - MIR SINE MIR -61 201 48 945 188 6 11 chr11 133014942 133015118 -15768354 + AluJb SINE Alu 122 296 -16 2264 115 0 0 chr11 133015124 133015419 -15768053 + AluSc SINE Alu 1 295 -14 450 235 78 0 chr11 133015426 133015541 -15767931 + MIR SINE MIR 81 204 -58 347 256 168 31 chr11 133018794 133018985 -15764487 + MIR SINE MIR 13 229 -33 2201 91 4 0 chr11 133019043 133019359 -15764113 - AluSx SINE Alu 0 325 9 440 317 131 9 chr11 133019784 133020005 -15763467 - MIR SINE MIR -13 249 2 182 314 0 0 chr11 133020724 133020775 -15762697 - MIR3 SINE MIR -6 202 152 721 209 146 0 chr11 133020781 133020939 -15762533 + MER5A DNA MER1_type 8 188 -1 2105 128 3 10 chr11 133021450 133021747 -15761725 - AluSx SINE Alu -17 295 1 490 263 191 49 chr11 133022604 133023145 -15760327 + L2 LINE L2 2507 3226 -87 303 170 64 142 chr11 133023291 133023432 -15760040 - MER94 DNA DNA 0 134 5 325 345 30 0 chr11 133023803 133023950 -15759522 + MIR SINE MIR 32 182 -63 234 355 83 0 chr11 133025038 133025159 -15758313 + L2 LINE L2 3181 3311 -2 516 254 40 16 chr11 133026020 133026146 -15757326 + MIR SINE MIR 106 234 -28 310 274 202 0 chr11 133026306 133026430 -15757042 + L2 LINE L2 3123 3271 -1 249 364 68 8 chr11 133026601 133026719 -15756753 - L2 LINE L2 -11 3261 3137 2337 106 0 0 chr11 133028989 133029281 -15754191 - AluSx SINE Alu -18 294 3 743 284 58 12 chr11 133030848 133031097 -15752375 + MIR SINE MIR 4 261 -1 257 346 72 20 chr11 133031118 133031271 -15752201 + MIR SINE MIR 49 209 -53 255 281 0 0 chr11 133031711 133031768 -15751704 + L2 LINE L2 3206 3262 -10 202 344 11 32 chr11 133032336 133032429 -15751043 + L3b LINE CR1 1477 1567 -16 738 314 50 50 chr11 133033187 133033544 -15749928 - L2 LINE L2 -2 3270 2914 532 344 15 15 chr11 133033586 133033845 -15749627 - L2 LINE L2 -584 2730 2472 346 280 181 55 chr11 133033847 133034118 -15749354 - L2 LINE L2 -1201 2113 1809 1911 150 0 13 chr11 133034905 133035212 -15748260 - AluSx SINE Alu -9 303 1 276 264 132 9 chr11 133036337 133036443 -15747029 - L2 LINE L2 -2 3311 3193 630 244 0 32 chr11 133036499 133036655 -15746817 - MER5A DNA MER1_type -28 161 11 181 293 341 0 chr11 133038868 133038950 -15744522 + L2 LINE L2 3144 3253 -19 224 161 11 0 chr11 133039021 133039069 -15744403 - MIR SINE MIR -86 122 73 325 341 59 30 chr11 133039388 133039523 -15743949 + MIR3 SINE MIR 5 143 -65 180 111 0 0 chr11 133039526 133039553 -15743919 + (TAA)n Simple_repeat Simple_repeat 3 29 0 2081 107 0 14 chr11 133039563 133039854 -15743618 + AluSg SINE Alu 1 287 -23 207 0 0 0 chr11 133039858 133039881 -15743591 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 220 280 0 0 chr11 133040289 133040373 -15743099 + CT-rich Low_complexity Low_complexity 1 84 0 234 150 0 0 chr11 133041040 133041080 -15742392 + (TG)n Simple_repeat Simple_repeat 2 41 0 240 313 0 102 chr11 133041127 133041255 -15742217 + MIR3 SINE MIR 1 115 -93 208 167 0 24 chr11 133041507 133041549 -15741923 + (CCA)n Simple_repeat Simple_repeat 2 42 0 207 250 0 31 chr11 133042511 133042575 -15740897 + C-rich Low_complexity Low_complexity 1 62 0 23 0 0 0 chr11 133044518 133044541 -15738931 + AT_rich Low_complexity Low_complexity 1 23 0 195 161 32 16 chr11 133045462 133045524 -15737948 + (TG)n Simple_repeat Simple_repeat 1 63 0 476 121 33 50 chr11 133045571 133045753 -15737719 + (TG)n Simple_repeat Simple_repeat 2 180 0 341 92 53 0 chr11 133045850 133045926 -15737546 + (TG)n Simple_repeat Simple_repeat 2 81 0 200 136 45 15 chr11 133045959 133046025 -15737447 + (TG)n Simple_repeat Simple_repeat 2 69 0 217 138 17 17 chr11 133046085 133046143 -15737329 + (TG)n Simple_repeat Simple_repeat 2 59 0 186 70 23 47 chr11 133046178 133046221 -15737251 + (TG)n Simple_repeat Simple_repeat 2 43 0 289 260 85 81 chr11 133046836 133047082 -15736390 + L2 LINE L2 2814 3060 -212 183 42 0 0 chr11 133047302 133047326 -15736146 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 229 313 125 18 chr11 133048084 133048196 -15735276 - MIR SINE MIR -65 197 74 1931 163 0 3 chr11 133048498 133048799 -15734673 + AluJb SINE Alu 1 300 -12 191 276 123 37 chr11 133049202 133049365 -15734107 + L3 LINE CR1 1213 1389 -188 341 260 190 30 chr11 133049517 133049717 -15733755 - MIR SINE MIR 0 262 31 227 159 48 63 chr11 133050032 133050095 -15733377 - L2 LINE L2 -11 3302 3241 337 184 163 21 chr11 133050213 133050354 -15733118 - L1ME4a LINE L1 -1 6120 5960 2418 72 3 13 chr11 133052603 133052908 -15730564 + AluSp SINE Alu 1 302 -11 449 299 91 10 chr11 133053112 133053309 -15730163 - MIR SINE MIR -22 240 28 906 180 11 26 chr11 133054130 133054319 -15729153 - AluJo SINE Alu -5 307 122 1251 138 0 11 chr11 133054333 133054514 -15728958 + FRAM SINE Alu 1 175 -1 603 281 53 77 chr11 133054666 133055133 -15728339 + L1ME3A LINE L1 5426 5881 -289 479 279 100 15 chr11 133055742 133055960 -15727512 + MIR SINE MIR 26 261 -1 276 185 0 0 chr11 133055980 133056034 -15727438 + GA-rich Low_complexity Low_complexity 2 55 0 2175 125 0 7 chr11 133056042 133056339 -15727133 - AluSq SINE Alu -18 295 1 701 253 25 83 chr11 133058249 133058436 -15725036 + MIR SINE MIR 2 169 -93 1546 171 45 18 chr11 133058436 133058722 -15724750 - AluJo SINE Alu -16 296 3 701 253 25 83 chr11 133058722 133058811 -15724661 + MIR SINE MIR 169 262 0 78 71 0 0 chr11 133058851 133059006 -15724466 + AT_rich Low_complexity Low_complexity 1 155 0 21 36 0 0 chr11 133059056 133059084 -15724388 + AT_rich Low_complexity Low_complexity 1 28 0 312 250 30 0 chr11 133059343 133059443 -15724029 + MER103 DNA DNA 55 157 -9 204 158 0 0 chr11 133059455 133059493 -15723979 + (TG)n Simple_repeat Simple_repeat 2 39 0 3055 80 11 8 chr11 133059799 133060173 -15723299 + THE1C LTR MaLR 1 375 0 1858 300 168 27 chr11 133060530 133061778 -15721694 - L2 LINE L2 -844 2470 1047 245 211 0 19 chr11 133061875 133061927 -15721545 + (CATATA)n Simple_repeat Simple_repeat 3 53 0 377 198 172 9 chr11 133062219 133062335 -15721137 - MIR SINE MIR -2 260 126 1764 200 69 36 chr11 133062517 133063130 -15720342 + L1MB4 LINE L1 1752 2478 -3906 8450 203 37 18 chr11 133063154 133063888 -15719584 + L1MB4 LINE L1 3576 4294 -2116 1610 107 66 119 chr11 133063888 133064207 -15719265 + AluSp SINE Alu 1 302 -11 8450 203 37 18 chr11 133064207 133064536 -15718936 + L1MB4 LINE L1 4294 4615 -1795 2169 113 3 0 chr11 133064536 133064851 -15718621 + AluSq SINE Alu 1 316 0 8450 203 37 18 chr11 133064851 133066053 -15717419 + L1MB4 LINE L1 4615 5881 -529 1199 170 63 124 chr11 133066055 133066449 -15717023 - MLT1A2 LTR MaLR -4 370 1 3033 156 15 13 chr11 133066449 133066635 -15716837 + L1MB4 LINE L1 5876 6060 -356 2259 92 7 0 chr11 133066635 133066928 -15716544 + AluSg SINE Alu 1 295 -15 3033 156 15 13 chr11 133066928 133066956 -15716516 + L1MB4 LINE L1 6060 6086 -330 2325 101 31 62 chr11 133066956 133067342 -15716130 - THE1C LTR MaLR 0 375 2 3033 156 15 13 chr11 133067342 133067665 -15715807 + L1MB4 LINE L1 6086 6415 -1 1224 160 0 10 chr11 133067811 133068011 -15715461 + AluJb SINE Alu 97 294 -18 624 234 116 106 chr11 133068091 133068293 -15715179 + L1ME3A LINE L1 2033 2231 -3984 2387 74 0 0 chr11 133068293 133068589 -15714883 - AluY SINE Alu -15 296 1 624 234 116 106 chr11 133068589 133068670 -15714802 + L1ME3A LINE L1 2231 2310 -3905 2140 113 13 13 chr11 133068670 133068979 -15714493 + AluSc SINE Alu 1 309 0 624 234 116 106 chr11 133068979 133069487 -15713985 + L1ME3A LINE L1 2310 2788 -3427 2612 164 48 17 chr11 133069499 133069961 -15713511 + MER54A LTR ERVL 426 901 0 3691 219 46 12 chr11 133069962 133070944 -15712528 + L1ME3A LINE L1 2945 3959 -2256 382 211 73 8 chr11 133070933 133071056 -15712416 + L1M4c LINE L1 3146 3276 -3106 * 593 188 195 41 chr11 133071102 133071371 -15712101 + Charlie5 DNA MER1_type 12 2624 0 1483 249 107 20 chr11 133071379 133071882 -15711590 + L1ME3A LINE L1 5685 6231 -8 216 0 0 0 chr11 133072249 133072273 -15711199 + (TG)n Simple_repeat Simple_repeat 1 24 0 323 344 104 27 chr11 133072880 133073063 -15710409 + MIR SINE MIR 40 236 -26 270 143 61 0 chr11 133073292 133073341 -15710131 - MER116 DNA Mariner 0 80 29 1750 157 7 11 chr11 133073356 133073642 -15709830 + AluJo SINE Alu 1 285 -27 23 33 0 0 chr11 133073644 133073674 -15709798 + AT_rich Low_complexity Low_complexity 1 30 0 250 277 24 12 chr11 133073762 133073845 -15709627 - L2 LINE L2 -64 3249 3166 201 360 44 64 chr11 133073936 133073959 -15709513 - L2 LINE L2 -419 2895 2873 1385 140 0 23 chr11 133073959 133074173 -15709299 + MER3 DNA MER1_type 1 209 0 201 360 44 64 chr11 133074173 133074341 -15709131 - L2 LINE L2 -441 2873 2703 219 36 0 0 chr11 133074341 133074369 -15709103 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2076 99 0 0 chr11 133074371 133074633 -15708839 - AluSg SINE Alu -33 277 16 201 360 44 64 chr11 133074633 133074687 -15708785 - L2 LINE L2 -612 2702 2651 3594 156 209 129 chr11 133075081 133076370 -15707102 + pTR5 LTR ERV1 745 2438 0 598 254 166 14 chr11 133076956 133077173 -15706299 + MIR SINE MIR 1 250 -12 575 237 18 47 chr11 133077259 133077428 -15706044 - MIR3 SINE MIR -37 171 8 261 0 0 0 chr11 133077827 133077856 -15705616 + (GGCTG)n Simple_repeat Simple_repeat 4 32 0 728 270 88 9 chr11 133078722 133078937 -15704535 + MER112 DNA MER1_type 23 254 -6 25 0 0 0 chr11 133079020 133079045 -15704427 + AT_rich Low_complexity Low_complexity 1 25 0 205 338 58 29 chr11 133080723 133080862 -15702610 + L2 LINE L2 2715 2857 -457 508 266 32 80 chr11 133081164 133081229 -15702243 + MER5A DNA MER1_type 11 78 -111 1553 183 24 3 chr11 133081229 133081542 -15701930 + AluJo SINE Alu 1 319 0 508 266 32 80 chr11 133081542 133081662 -15701810 + MER5A DNA MER1_type 78 189 0 709 229 172 0 chr11 133081767 133081959 -15701513 + MIR SINE MIR 28 252 -10 676 247 141 18 chr11 133082670 133082897 -15700575 - MIR SINE MIR 0 262 8 1180 289 130 21 chr11 133083161 133083962 -15699510 - L2 LINE L2 -1 3312 2420 228 204 0 0 chr11 133084117 133084171 -15699301 - L1ME3A LINE L1 -224 5946 5893 1185 273 52 57 chr11 133084291 133084950 -15698522 - L1ME3A LINE L1 -337 5825 5158 246 62 0 0 chr11 133084951 133084983 -15698489 + (T)n Simple_repeat Simple_repeat 1 32 0 1938 145 26 0 chr11 133085198 133085502 -15697970 - AluJo SINE Alu 0 312 1 364 313 104 12 chr11 133085675 133085838 -15697634 - L1ME3A LINE L1 -1180 4966 4789 3079 223 19 16 chr11 133085862 133086504 -15696968 + MER82 DNA MER2_type 1 644 -9 2909 162 116 0 chr11 133087190 133087769 -15695703 - L1MB3 LINE L1 -9 6174 5529 542 267 78 22 chr11 133087578 133087810 -15695662 - L1PA8A LINE L1 -405 5726 5482 * 774 282 19 38 chr11 133088696 133088962 -15694510 - MIR SINE MIR 0 262 2 287 222 165 34 chr11 133091116 133091292 -15692180 + L1ME4a LINE L1 5793 5991 -130 2185 103 0 13 chr11 133091508 133091808 -15691664 - AluSx SINE Alu -16 296 1 274 341 134 22 chr11 133092302 133092616 -15690856 + L2 LINE L2 1698 2046 -1268 333 332 115 42 chr11 133092751 133093082 -15690390 + L2 LINE L2 2918 3272 0 22 35 0 0 chr11 133094228 133094257 -15689215 + AT_rich Low_complexity Low_complexity 1 29 0 248 303 90 25 chr11 133096333 133096455 -15687017 - MIR SINE MIR -56 206 77 252 258 90 71 chr11 133096580 133096758 -15686714 - MIR SINE MIR -62 146 12 188 379 78 52 chr11 133096789 133096905 -15686567 - L2 LINE L2 -16 3256 3138 182 301 29 78 chr11 133097108 133097314 -15686158 + L2 LINE L2 1633 1828 -1486 638 393 107 14 chr11 133097388 133098077 -15685395 + L2 LINE L2 2218 2970 -344 639 281 100 49 chr11 133098389 133098738 -15684734 - MLT1J LTR MaLR 0 511 145 233 344 0 0 chr11 133099114 133099178 -15684294 + L2 LINE L2 3250 3313 0 744 115 8 25 chr11 133101379 133101501 -15681971 + FLAM_A SINE Alu 20 139 -3 24 77 0 0 chr11 133101776 133101828 -15681644 + AT_rich Low_complexity Low_complexity 1 52 0 340 362 61 41 chr11 133102071 133102317 -15681155 + L2 LINE L2 2596 2846 -468 274 363 48 20 chr11 133102369 133102515 -15680957 + L2 LINE L2 2924 3073 -199 235 328 37 0 chr11 133102730 133102809 -15680663 + MIR SINE MIR 55 144 -69 22 56 0 0 chr11 133103080 133103116 -15680356 + AT_rich Low_complexity Low_complexity 1 36 0 243 383 106 11 chr11 133104350 133104530 -15678942 - L3b LINE CR1 -14 1569 1373 21 0 0 0 chr11 133104872 133104893 -15678579 + AT_rich Low_complexity Low_complexity 1 21 0 209 359 0 39 chr11 133104958 133105061 -15678411 - L3b LINE CR1 -227 1356 1258 392 224 12 0 chr11 133105276 133105361 -15678111 + MIR SINE MIR 119 204 -58 359 262 22 104 chr11 133105497 133105680 -15677792 - MER5B DNA MER1_type -3 175 8 201 330 11 33 chr11 133105769 133105860 -15677612 - L2 LINE L2 -67 3246 3158 * 775 249 90 0 chr11 133105858 133106059 -15677413 - MIR SINE MIR -31 231 13 311 279 140 22 chr11 133106267 133106446 -15677026 + MIR SINE MIR 48 247 -15 583 251 118 6 chr11 133107969 133108166 -15675306 + MIR SINE MIR 44 262 0 316 301 147 32 chr11 133108376 133108532 -15674940 + L2 LINE L2 3098 3271 -1 6429 135 17 39 chr11 133109319 133110503 -15672969 - L1MC1 LINE L1 0 6333 5175 1794 161 68 3 chr11 133111082 133111405 -15672067 - MER2 DNA MER2_type 0 344 1 1423 146 34 31 chr11 133112940 133113263 -15670209 + MER33 DNA MER1_type 1 324 0 517 325 90 43 chr11 133114016 133114392 -15669080 + L3b LINE CR1 1105 1498 -85 263 127 0 36 chr11 133114922 133114977 -15668495 + (CATA)n Simple_repeat Simple_repeat 4 56 0 6420 136 73 7 chr11 133114977 133116132 -15667340 - Tigger3b DNA MER2_type 0 1231 1 330 314 0 16 chr11 133116190 133116314 -15667158 - LTR67 LTR ERVL 0 557 436 442 263 97 0 chr11 133116503 133116617 -15666855 - L2 LINE L2 -1 3312 3188 295 256 175 31 chr11 133117623 133117783 -15665689 - HERVL LTR ERVL -555 4930 4748 345 335 36 30 chr11 133117978 133118145 -15665327 - HERVL LTR ERVL -4011 1643 1476 2390 65 3 10 chr11 133118362 133118669 -15664803 - AluY SINE Alu -6 305 1 356 254 71 63 chr11 133119517 133119643 -15663829 - LTR67 LTR ERVL -1 556 430 232 236 36 0 chr11 133120102 133120157 -15663315 - L2 LINE L2 -3 3310 3254 239 308 66 33 chr11 133121391 133121482 -15661990 - L2 LINE L2 -19 3253 3160 1489 280 59 54 chr11 133121496 133122104 -15661368 + L2 LINE L2 2077 2687 -627 2078 135 0 10 chr11 133122145 133122457 -15661015 + AluSx SINE Alu 1 309 -3 832 249 138 19 chr11 133122466 133122827 -15660645 + L2 LINE L2 2889 3292 -21 2107 116 7 3 chr11 133123052 133123344 -15660128 + AluSx SINE Alu 1 293 -19 6699 52 26 0 chr11 133123531 133124391 -15659081 + L1PA6 LINE L1 5273 6154 0 23 86 0 0 chr11 133125969 133126027 -15657445 + AT_rich Low_complexity Low_complexity 1 58 0 1390 291 153 26 chr11 133126162 133127609 -15655863 - L1M4 LINE L1 -891 5255 3625 975 217 98 0 chr11 133128132 133128376 -15655096 - L1ME1 LINE L1 -5 6161 5894 988 175 11 0 chr11 133128377 133128560 -15654912 - L1MD2 LINE L1 -3 6356 6172 899 228 32 12 chr11 133128663 133128909 -15654563 + L1M4 LINE L1 4710 4960 -1186 229 61 0 0 chr11 133128919 133128952 -15654520 + LTR14B LTR ERVK 4 36 -572 1033 256 40 10 chr11 133128962 133129263 -15654209 - L1M4 LINE L1 -1426 4720 4411 989 148 27 0 chr11 133129263 133129412 -15654060 - Tigger3(Golem) DNA MER2_type 0 3029 2877 7584 237 54 25 chr11 133129412 133131893 -15651579 - L1M4 LINE L1 -1174 4972 2420 315 202 19 13 chr11 133132447 133132566 -15650906 - L1ME1 LINE L1 -302 5868 5748 310 326 109 0 chr11 133133004 133133151 -15650321 + MIR3 SINE MIR 45 207 -1 2178 121 0 7 chr11 133133363 133133660 -15649812 - AluSx SINE Alu -17 295 1 183 339 0 0 chr11 133135576 133135635 -15647837 - L2 LINE L2 -463 2851 2793 1208 190 4 32 chr11 133135639 133135886 -15647586 - MLT1E2 LTR MaLR 0 626 387 674 172 148 0 chr11 133135905 133136033 -15647439 - MLT1E2 LTR MaLR -340 286 140 208 293 0 0 chr11 133136102 133136160 -15647312 - L2 LINE L2 -573 2741 2684 263 360 29 0 chr11 133136214 133136353 -15647119 - LTR67 LTR ERVL -46 511 369 199 322 142 15 chr11 133136823 133137028 -15646444 - L2 LINE L2 -754 2560 2330 352 227 47 55 chr11 133137302 133137393 -15646079 - HAL1b LINE L1 -738 610 519 1653 186 99 14 chr11 133137393 133137758 -15645714 - MSTD LTR MaLR 0 396 1 352 227 47 55 chr11 133137758 133137794 -15645678 - HAL1b LINE L1 -829 519 484 204 135 0 0 chr11 133138455 133138492 -15644980 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 36 44 0 15 chr11 133138544 133138593 -15644879 + AT_rich Low_complexity Low_complexity 1 50 -17 2300 87 0 3 chr11 133138593 133138880 -15644592 - AluSg SINE Alu -23 287 2 36 44 0 15 chr11 133138880 133138898 -15644574 + AT_rich Low_complexity Low_complexity 50 67 0 308 249 47 22 chr11 133138967 133139107 -15644365 - MIR SINE MIR -50 212 75 721 191 15 0 chr11 133139218 133139349 -15644123 - FLAM_C SINE Alu 0 133 1 21 36 0 0 chr11 133139505 133139533 -15643939 + AT_rich Low_complexity Low_complexity 1 28 0 186 43 0 0 chr11 133140730 133140753 -15642719 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 195 42 0 0 chr11 133144194 133144218 -15639254 + (TA)n Simple_repeat Simple_repeat 2 25 0 31 44 0 0 chr11 133144262 133144307 -15639165 + AT_rich Low_complexity Low_complexity 1 45 0 729 245 33 16 chr11 133145157 133145341 -15638131 - MIR SINE MIR -74 188 2 589 359 108 10 chr11 133146499 133146908 -15636564 - LTR16A LTR ERVL 0 450 2 3320 338 67 37 chr11 133147034 133150130 -15633342 - ERVL LTR ERVL -150 5335 2127 3967 284 75 23 chr11 133150529 133150938 -15632534 - ERVL LTR ERVL -3010 1986 1599 2200 92 7 0 chr11 133150938 133151263 -15632209 - AluSx SINE Alu 0 327 1 3967 284 75 23 chr11 133151263 133152314 -15631158 - ERVL LTR ERVL -3397 1599 563 283 205 27 18 chr11 133152354 133152466 -15631006 + (TA)n Simple_repeat Simple_repeat 1 113 0 28 0 0 0 chr11 133157249 133157277 -15626195 + AT_rich Low_complexity Low_complexity 1 28 0 908 208 0 0 chr11 133160364 133160537 -15622935 + MER5A DNA MER1_type 17 189 0 197 187 32 24 chr11 133161824 133161947 -15621525 + (CA)n Simple_repeat Simple_repeat 2 125 0 229 143 16 16 chr11 133162055 133162118 -15621354 + (CA)n Simple_repeat Simple_repeat 2 64 0 394 263 23 6 chr11 133162199 133162370 -15621102 + (CA)n Simple_repeat Simple_repeat 2 175 0 207 260 0 27 chr11 133162381 133162454 -15621018 + (CA)n Simple_repeat Simple_repeat 2 72 0 312 303 71 76 chr11 133164677 133164915 -15618557 - MIR SINE MIR -6 256 20 258 125 0 0 chr11 133168090 133168138 -15615334 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 857 193 3 3 chr11 133168268 133168563 -15614909 + (TCCA)n Simple_repeat Simple_repeat 1 295 0 1662 162 14 37 chr11 133168957 133169274 -15614198 - AluJo SINE Alu 0 312 3 232 167 0 0 chr11 133171155 133171197 -15612275 + L2 LINE L2 3271 3312 -1 751 247 40 14 chr11 133171382 133171605 -15611867 + MIR SINE MIR 28 256 -6 345 24 0 0 chr11 133172313 133172355 -15611117 + (CA)n Simple_repeat Simple_repeat 1 42 0 413 284 167 10 chr11 133174360 133174564 -15608908 + MIR SINE MIR 21 256 -6 2370 153 3 3 chr11 133175446 133175811 -15607661 + MLT1A1 LTR MaLR 1 365 0 380 71 19 2 chr11 133175811 133175868 -15607604 + MLT1A1-int LTR MaLR 1 56 -1315 691 183 0 0 chr11 133175871 133175986 -15607486 + FLAM_C SINE Alu 3 117 -26 204 40 0 0 chr11 133176408 133176433 -15607039 + (A)n Simple_repeat Simple_repeat 1 25 0 1159 137 12 0 chr11 133176435 133176603 -15606869 + AluJb SINE Alu 128 297 -15 662 139 56 0 chr11 133176603 133176711 -15606761 + MLT-int LTR MaLR 51 164 -1571 489 310 41 25 chr11 133177173 133177370 -15606102 + L2 LINE L2 2580 2779 -535 1031 285 72 26 chr11 133177402 133178030 -15605442 + L2 LINE L2 2659 3312 -1 440 316 69 62 chr11 133178042 133178475 -15604997 + L2 LINE L2 2830 3265 -7 655 252 179 0 chr11 133182312 133182530 -15600942 - MIR SINE MIR -3 259 3 342 262 127 0 chr11 133182626 133182752 -15600720 - MIR3 SINE MIR -7 201 60 2380 86 0 0 chr11 133184668 133184969 -15598503 + AluY SINE Alu 1 301 -10 180 0 0 0 chr11 133185115 133185135 -15598337 + (A)n Simple_repeat Simple_repeat 1 20 0 5639 216 66 17 chr11 133185190 133186615 -15596857 - L1MC4 LINE L1 0 8042 6539 2076 108 0 51 chr11 133186615 133186931 -15596541 - AluSg SINE Alu -10 300 1 5639 216 66 17 chr11 133186931 133187012 -15596460 - L1MC4 LINE L1 -1503 6539 6463 2237 245 172 57 chr11 133187014 133188216 -15595256 - L1MC4 LINE L1 0 8042 6703 411 21 0 0 chr11 133188223 133188271 -15595201 + (CA)n Simple_repeat Simple_repeat 1 48 0 2047 104 3 14 chr11 133189877 133190164 -15593308 - AluSx SINE Alu -14 298 15 261 257 71 0 chr11 133190193 133190306 -15593166 - L2 LINE L2 -219 3053 2933 447 262 158 11 chr11 133190679 133190862 -15592610 + MIR SINE MIR 36 245 -17 474 273 0 0 chr11 133190997 133191265 -15592207 + (CA)n Simple_repeat Simple_repeat 1 268 0 451 238 56 21 chr11 133192041 133192184 -15591288 - MIR3 SINE MIR -7 201 54 246 248 119 18 chr11 133192206 133192315 -15591157 + MIR SINE MIR 21 140 -122 2227 119 0 0 chr11 133193327 133193620 -15589852 + AluSg1 SINE Alu 1 293 -16 1848 204 25 34 chr11 133194418 133194889 -15588583 - MLT1C LTR MaLR 0 467 1 379 293 65 78 chr11 133195705 133196012 -15587460 - L2 LINE L2 -49 3223 2921 217 354 149 7 chr11 133196792 133197094 -15586378 + L2 LINE L2 1609 1953 -1361 529 348 49 43 chr11 133197129 133197595 -15585877 + L2 LINE L2 2804 3272 0 234 299 96 34 chr11 133198162 133198339 -15585133 - L2 LINE L2 -561 2753 2566 268 266 79 43 chr11 133198891 133199030 -15584442 - L2 LINE L2 -186 3086 2943 345 298 33 0 chr11 133200193 133200314 -15583158 + MIR SINE MIR 105 229 -33 394 267 0 67 chr11 133200492 133200627 -15582845 + MIR3 SINE MIR 15 140 -68 431 291 194 5 chr11 133200733 133200939 -15582533 - MIR SINE MIR -16 246 2 535 283 30 0 chr11 133202926 133203092 -15580380 - MIR SINE MIR -3 259 89 701 262 28 23 chr11 133203385 133203599 -15579873 - MIR SINE MIR -26 236 22 308 368 68 13 chr11 133204048 133204431 -15579041 + L1MC4a LINE L1 4762 5165 -981 21 36 0 0 chr11 133204464 133204492 -15578980 + AT_rich Low_complexity Low_complexity 1 28 0 2543 73 0 0 chr11 133204563 133204863 -15578609 - AluSc SINE Alu -9 300 1 716 275 238 22 chr11 133204873 133205458 -15578014 + L1MC4a LINE L1 5264 5974 -1834 313 247 22 11 chr11 133205632 133205721 -15577751 + L1ME1 LINE L1 6060 6149 -17 430 266 101 19 chr11 133205869 133206027 -15577445 - MIR SINE MIR -16 246 76 199 318 84 19 chr11 133207859 133207966 -15575506 - L2 LINE L2 -23 3249 3136 292 265 109 12 chr11 133208555 133208757 -15574715 + MIR3 SINE MIR 44 262 0 345 257 54 149 chr11 133210082 133210194 -15573278 - MIR SINE MIR -13 249 128 1553 183 55 11 chr11 133210194 133210342 -15573130 - AluJb SINE Alu -26 286 146 186 43 0 0 chr11 133210342 133210365 -15573107 + (TTA)n Simple_repeat Simple_repeat 2 24 0 2066 134 0 0 chr11 133210365 133210649 -15572823 - AluSx SINE Alu -28 284 1 219 36 0 0 chr11 133210649 133210677 -15572795 + (TTA)n Simple_repeat Simple_repeat 2 29 0 1553 183 55 11 chr11 133210677 133210800 -15572672 - AluJb SINE Alu -165 147 1 345 257 54 149 chr11 133210800 133210928 -15572544 - MIR SINE MIR -134 128 32 1718 156 46 14 chr11 133211329 133211612 -15571860 + AluJo SINE Alu 1 292 -20 923 234 10 0 chr11 133213906 133214098 -15569374 + MER58A DNA MER1_type 30 223 -1 323 316 86 13 chr11 133215205 133215357 -15568115 - MIR3 SINE MIR -8 200 38 2107 41 0 0 chr11 133217352 133217598 -15565874 + L1PA3 LINE L1 5910 6155 0 212 291 0 0 chr11 133217844 133217899 -15565573 - L2 LINE L2 -16 3256 3202 779 167 7 0 chr11 133218162 133218300 -15565172 - L1MA8 LINE L1 -134 6157 6019 190 263 272 18 chr11 133218953 133219067 -15564405 + MIR SINE MIR 58 200 -62 1536 187 18 14 chr11 133221134 133221412 -15562060 + AluJo SINE Alu 1 279 -33 216 0 0 0 chr11 133221417 133221441 -15562031 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1052 195 45 0 chr11 133222343 133222543 -15560929 + MER3 DNA MER1_type 1 209 0 387 206 294 0 chr11 133222992 133223128 -15560344 - MIR SINE MIR -6 256 81 198 0 0 0 chr11 133223418 133223440 -15560032 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 555 191 29 22 chr11 133223550 133223686 -15559786 - L1MB8 LINE L1 -2 6176 6040 8006 149 22 10 chr11 133223722 133224404 -15559068 - L1MA4A LINE L1 -10 7355 6683 401 19 38 0 chr11 133224404 133224457 -15559015 + (TTTTG)n Simple_repeat Simple_repeat 1 55 0 8006 149 22 10 chr11 133224457 133226165 -15557307 - L1MA4A LINE L1 -682 6683 4930 31656 31 5 1 chr11 133226171 133232309 -15551163 - L1PA3 LINE L1 0 6155 7 9617 198 72 25 chr11 133232315 133232501 -15550971 - L1MA4A LINE L1 -2260 4948 4772 405 0 0 0 chr11 133232501 133232546 -15550926 + (TG)n Simple_repeat Simple_repeat 1 45 0 9617 198 72 25 chr11 133232546 133234869 -15548603 - L1MA4A LINE L1 -2436 4772 2561 2133 115 7 3 chr11 133234869 133235155 -15548317 + AluSc SINE Alu 1 287 -22 9617 198 72 25 chr11 133235155 133235433 -15548039 - L1MA4A LINE L1 -4647 2561 2298 2170 112 7 0 chr11 133235433 133235750 -15547722 - AluSp SINE Alu 0 319 1 9617 198 72 25 chr11 133235750 133237607 -15545865 - L1MA4A LINE L1 -4910 2298 66 874 84 0 0 chr11 133237609 133237716 -15545756 + AluSc SINE Alu 181 287 -22 429 111 0 14 chr11 133237717 133237789 -15545683 - L1M2c LINE L1 -4828 1961 1891 1663 178 0 4 chr11 133237796 133238066 -15545406 - AluJo SINE Alu -38 274 6 449 251 115 33 chr11 133238099 133238282 -15545190 - MLT1K LTR MaLR 0 588 391 278 210 62 49 chr11 133238592 133238673 -15544799 - MIR SINE MIR -116 146 65 287 299 112 9 chr11 133240880 133240987 -15542485 - L2 LINE L2 0 3272 3155 1074 135 141 5 chr11 133242199 133242391 -15541081 - MER20 DNA MER1_type -1 218 1 2509 47 0 3 chr11 133243359 133243657 -15539815 - AluY SINE Alu -14 297 1 1982 92 4 0 chr11 133244261 133244510 -15538962 - AluSg SINE Alu -25 285 36 2327 75 0 10 chr11 133246262 133246554 -15536918 - AluY SINE Alu -19 292 4 1740 181 0 10 chr11 133246749 133247047 -15536425 - AluJb SINE Alu -14 298 4 1766 175 0 10 chr11 133247311 133247602 -15535870 + AluJb SINE Alu 1 288 -24 733 252 98 74 chr11 133247609 133247946 -15535526 - MLT1I LTR MaLR -43 366 22 218 373 55 27 chr11 133248042 133248152 -15535320 + MIR SINE MIR 33 145 -63 225 0 0 0 chr11 133251428 133251453 -15532019 + (T)n Simple_repeat Simple_repeat 1 25 0 2609 52 0 3 chr11 133251598 133251904 -15531568 - AluY SINE Alu -6 305 1 2347 113 156 8 chr11 133252549 133252922 -15530550 - MSTA LTR MaLR 0 428 1 683 0 24 0 chr11 133253463 133253545 -15529927 + (GAAA)n Simple_repeat Simple_repeat 1 84 0 363 335 52 7 chr11 133254080 133254235 -15529237 - MIR SINE MIR -15 247 86 1477 180 17 20 chr11 133254438 133254569 -15528903 + AluJo SINE Alu 4 134 -178 2249 87 3 26 chr11 133254569 133254881 -15528591 + AluSc SINE Alu 1 305 -4 1477 180 17 20 chr11 133254881 133255077 -15528395 + AluJo SINE Alu 134 312 0 303 315 0 11 chr11 133255157 133255246 -15528226 + MIR SINE MIR 6 93 -169 1288 308 110 33 chr11 133255246 133256481 -15526991 - L2 LINE L2 0 3313 1990 299 329 39 45 chr11 133256544 133256699 -15526773 + MIR SINE MIR 86 239 -23 1969 85 28 50 chr11 133257480 133257763 -15525709 + AluSx SINE Alu 1 277 -35 244 0 27 27 chr11 133257763 133257800 -15525672 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 26 0 0 0 chr11 133257852 133257878 -15525594 + AT_rich Low_complexity Low_complexity 1 26 0 917 217 0 20 chr11 133258537 133258740 -15524732 + Charlie7 DNA MER1_type 2091 2289 -323 188 262 24 48 chr11 133258821 133258905 -15524567 - MIR SINE MIR 0 262 181 386 294 71 24 chr11 133259074 133259244 -15524228 + MER5A DNA MER1_type 12 189 0 451 198 121 38 chr11 133259261 133259418 -15524054 - Charlie7 DNA MER1_type 0 2612 2443 229 279 65 90 chr11 133259675 133259876 -15523596 - L1ME3A LINE L1 -3 6167 5972 * 3620 276 90 31 chr11 133259854 133262810 -15520662 - L1ME3 LINE L1 -215 5947 2914 2834 3 0 0 chr11 133262972 133263274 -15520198 - AluYa5 SINE Alu -9 302 1 726 251 142 35 chr11 133263277 133263623 -15519849 - Charlie7 DNA MER1_type -2174 438 56 2330 76 3 3 chr11 133264104 133264407 -15519065 + AluY SINE Alu 1 303 -8 1501 112 64 0 chr11 133265116 133265365 -15518107 + L1MA8 LINE L1 5985 6249 -42 849 118 0 0 chr11 133265369 133265479 -15517993 + AluSq/x SINE Alu 37 146 -166 490 330 35 10 chr11 133265491 133265691 -15517781 - MIR SINE MIR -51 211 7 360 0 0 0 chr11 133265751 133265791 -15517681 + (CA)n Simple_repeat Simple_repeat 2 41 0 344 324 79 61 chr11 133266731 133267185 -15516287 + L1M2 LINE L1 3 497 -6341 1810 199 31 70 chr11 133268018 133268560 -15514912 + L1PA16 LINE L1 2144 2664 -3482 2408 172 45 17 chr11 133268587 133268663 -15514809 + L1MA9 LINE L1 5261 5333 -979 6296 92 4 31 chr11 133268663 133269750 -15513722 + L1PB1 LINE L1 4958 6019 -132 2440 69 0 7 chr11 133269750 133270053 -15513419 + AluY SINE Alu 1 301 -10 6296 92 4 31 chr11 133270053 133270182 -15513290 + L1PB1 LINE L1 6019 6150 -1 2408 172 45 17 chr11 133270182 133270672 -15512800 + L1MA9 LINE L1 5333 5796 -516 210 118 0 0 chr11 133270672 133270706 -15512766 + (CA)n Simple_repeat Simple_repeat 1 34 0 2408 172 45 17 chr11 133270706 133270733 -15512739 + L1MA9 LINE L1 5796 5821 -491 710 182 13 32 chr11 133270734 133270888 -15512584 + L1MA9 LINE L1 5986 6136 -176 5407 156 18 15 chr11 133270901 133272569 -15510903 + L1PA16 LINE L1 4482 6162 -4 1219 220 21 52 chr11 133272595 133272948 -15510524 + L1M4c LINE L1 1 325 -6217 2842 199 38 55 chr11 133272948 133273559 -15509913 + L1M4c LINE L1 527 1126 -5416 2349 131 40 3 chr11 133273559 133273910 -15509562 + THE1B LTR MaLR 1 364 0 2842 199 38 55 chr11 133273910 133273991 -15509481 + L1M4c LINE L1 1126 1207 -5335 542 239 109 42 chr11 133274003 133274241 -15509231 - MLT1C LTR MaLR -73 394 141 * 982 161 21 99 chr11 133274236 133274479 -15508993 + MLT1D LTR MaLR 123 346 -159 340 161 97 97 chr11 133275001 133275125 -15508347 - L1MC4 LINE L1 -1 8041 7918 634 153 0 0 chr11 133275519 133275617 -15507855 + AluSg/x SINE Alu 174 271 -39 206 257 69 50 chr11 133275699 133275800 -15507672 - L2 LINE L2 -607 2707 2605 213 314 49 49 chr11 133275870 133275972 -15507500 + L2 LINE L2 3073 3174 -98 252 276 42 136 chr11 133276009 133276295 -15507177 + MIR SINE MIR 3 261 -1 25 0 0 0 chr11 133276303 133276328 -15507144 + AT_rich Low_complexity Low_complexity 1 25 0 2255 273 71 89 chr11 133276784 133278062 -15505410 + L2 LINE L2 545 1795 -1519 1466 148 0 5 chr11 133278062 133278285 -15505187 + AluJb SINE Alu 85 306 -6 2255 273 71 89 chr11 133278285 133278468 -15505004 + L2 LINE L2 1795 1980 -1334 3250 181 55 29 chr11 133278483 133279217 -15504255 - L1ME2 LINE L1 -9 6155 5403 2289 194 56 17 chr11 133279218 133279626 -15503846 - MSTB LTR MaLR -2 424 1 8960 183 21 11 chr11 133279631 133280158 -15503314 - MSTB-int LTR MaLR -5 1646 1126 4232 131 11 19 chr11 133280158 133280798 -15502674 - MER41B LTR ERV1 0 635 1 8960 183 21 11 chr11 133280798 133281900 -15501572 - MSTB-int LTR MaLR -525 1126 1 2295 178 36 14 chr11 133281900 133282315 -15501157 - MSTB LTR MaLR -2 424 1 2002 246 44 5 chr11 133282322 133282907 -15500565 - L1ME2 LINE L1 -745 5401 4794 332 272 73 7 chr11 133283441 133283577 -15499895 + L1ME4a LINE L1 5966 6110 -11 223 308 100 33 chr11 133284668 133284788 -15498684 - L2 LINE L2 -204 3068 2941 351 61 20 0 chr11 133284803 133284852 -15498620 - LTR41 LTR ERVL -719 54 5 2432 183 19 24 chr11 133284956 133285382 -15498090 - MSTB LTR MaLR -2 424 1 315 331 71 27 chr11 133286007 133286191 -15497281 + MIR SINE MIR 45 236 -26 953 168 130 16 chr11 133286195 133286380 -15497092 + AluJo SINE Alu 48 253 -59 228 282 0 24 chr11 133286429 133286514 -15496958 - L1M2 LINE L1 -520 5777 5695 345 226 0 0 chr11 133286901 133286985 -15496487 + (CATATA)n Simple_repeat Simple_repeat 6 89 0 5982 223 101 28 chr11 133287629 133287783 -15495689 - L1M2 LINE L1 -4977 2232 2091 2170 112 7 0 chr11 133287783 133288103 -15495369 - AluSp SINE Alu 0 322 1 5982 223 101 28 chr11 133288103 133289960 -15493512 - L1M2 LINE L1 -5118 2091 66 874 84 0 0 chr11 133289962 133290069 -15493403 + AluSc SINE Alu 181 287 -22 429 111 0 14 chr11 133290070 133290142 -15493330 - L1M2c LINE L1 -4828 1961 1891 1663 178 0 4 chr11 133290149 133290419 -15493053 - AluJo SINE Alu -38 274 6 449 251 115 33 chr11 133290452 133290635 -15492837 - MLT1K LTR MaLR 0 588 391 278 210 62 49 chr11 133290945 133291026 -15492446 - MIR SINE MIR -116 146 65 287 299 112 9 chr11 133294439 133294546 -15488926 - L2 LINE L2 0 3272 3155 623 103 23 0 chr11 133295791 133295878 -15487594 + AluJ/FLAM SINE Alu 4 92 -220 226 265 84 48 chr11 133296651 133296734 -15486738 - MER91B DNA MER1_type -11 179 94 1502 147 62 47 chr11 133296815 133297156 -15486316 + MER4A LTR ERV1 1 346 -318 564 154 194 86 chr11 133297161 133297414 -15486058 + MER4C LTR ERV1 157 445 -20 274 250 19 0 chr11 133297435 133297487 -15485985 - MER91B DNA MER1_type -134 56 4 290 25 0 25 chr11 133297927 133297967 -15485505 + (CA)n Simple_repeat Simple_repeat 2 40 0 493 320 48 26 chr11 133298239 133298511 -15484961 + L1MEd LINE L1 88 365 -5840 357 291 33 46 chr11 133298532 133298683 -15484789 + L1MEd LINE L1 424 572 -5633 834 194 0 26 chr11 133298744 133298899 -15484573 + FRAM SINE Alu 10 160 -16 1909 99 25 179 chr11 133298906 133299309 -15484163 + LTR14B LTR ERVK 3 607 -1 5618 56 11 3 chr11 133299310 133300003 -15483469 + HERVK14 LTR ERVK 1 699 -5246 3205 105 54 0 chr11 133300037 133300485 -15482987 + HERVK14 LTR ERVK 1705 2176 -3769 192 242 0 0 chr11 133301187 133301282 -15482190 + GA-rich Low_complexity Low_complexity 2 96 0 910 77 69 0 chr11 133301507 133301637 -15481835 + HERVK14 LTR ERVK 4279 4417 -1528 * 5950 79 33 8 chr11 133301610 133302459 -15481013 + HERVK14 LTR ERVK 4992 5945 0 308 145 0 32 chr11 133302462 133302524 -15480948 + LTR14B LTR ERVK 1 60 -548 * 2078 99 118 22 chr11 133302521 133302876 -15480596 + LTR14B LTR ERVK 220 608 0 639 285 118 36 chr11 133302901 133303239 -15480233 + L1MEd LINE L1 1263 1661 -4735 5511 151 71 91 chr11 133303239 133304543 -15478929 - MER52C LTR ERV1 0 1278 1 639 285 118 36 chr11 133304543 133304731 -15478741 + L1MEd LINE L1 1661 1832 -4564 845 306 78 14 chr11 133305097 133305735 -15477737 + L1MEd LINE L1 2216 2894 -3321 1019 238 12 40 chr11 133305791 133306043 -15477429 - MIR SINE MIR 0 262 18 240 195 204 44 chr11 133306072 133306185 -15477287 + L1MEd LINE L1 2942 3072 -3143 282 259 82 38 chr11 133306267 133306290 -15477182 + L1MEd LINE L1 3394 3415 -2800 1909 172 3 0 chr11 133306290 133306598 -15476874 + AluSx SINE Alu 1 309 -3 282 259 82 38 chr11 133306598 133306732 -15476740 + L1MEd LINE L1 3415 3558 -2657 2192 113 0 0 chr11 133307482 133307775 -15475697 - AluSg SINE Alu -17 293 1 426 219 70 31 chr11 133308217 133308345 -15475127 - MLT1L LTR MaLR -52 563 431 5834 116 143 42 chr11 133308383 133309533 -15473939 + MER52C LTR ERV1 3 1269 -9 300 135 19 0 chr11 133309539 133309591 -15473881 + MER52C LTR ERV1 1226 1278 0 1987 135 0 10 chr11 133310565 133310868 -15472604 - AluSx SINE Alu -12 300 1 1943 148 3 0 chr11 133311222 133311529 -15471943 - AluSx SINE Alu 0 308 1 201 171 0 0 chr11 133311617 133311652 -15471820 + T-rich Low_complexity Low_complexity 2 36 0 21 36 0 0 chr11 133311918 133311946 -15471526 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr11 133312500 133312525 -15470947 + AT_rich Low_complexity Low_complexity 1 25 0 365 272 89 55 chr11 133313407 133313609 -15469863 - L1MEd LINE L1 -5494 625 417 295 315 37 9 chr11 133313636 133313744 -15469728 - L1MEd LINE L1 -5766 353 243 4195 144 44 40 chr11 133314434 133315183 -15468289 + Tigger1 DNA MER2_type 1 752 -1666 1560 147 21 42 chr11 133315181 133315467 -15468005 + Tigger1 DNA MER2_type 2135 2414 -4 * 2788 110 5 3 chr11 133315472 133315846 -15467626 - THE1C LTR MaLR 0 375 1 1051 210 22 52 chr11 133316406 133316678 -15466794 + AluJb SINE Alu 36 299 -13 2056 252 98 60 chr11 133316698 133317997 -15465475 + L1MEc LINE L1 820 2167 -4229 308 255 30 45 chr11 133318661 133318832 -15464640 + L1MEc LINE L1 2135 2263 -3952 3459 155 26 13 chr11 133318901 133319519 -15463953 + L1MB4 LINE L1 5555 6180 0 394 304 67 43 chr11 133319764 133320093 -15463379 + L2 LINE L2 1776 2112 -1202 466 340 98 51 chr11 133320320 133320893 -15462579 + L2 LINE L2 2188 2787 -527 6789 173 27 9 chr11 133321191 133323200 -15460272 - L1MB7 LINE L1 -16 7128 5083 * 6956 183 40 16 chr11 133323198 133324959 -15458513 - L1MB7 LINE L1 -2509 4597 2792 2060 133 10 0 chr11 133324959 133325260 -15458212 - AluSq SINE Alu -9 304 1 6956 183 40 16 chr11 133325260 133325282 -15458190 - L1MB7 LINE L1 -4314 2792 2772 10518 166 41 20 chr11 133325301 133327226 -15456246 - L1MB7 LINE L1 -4603 2503 196 2859 155 38 8 chr11 133327229 133327701 -15455771 + MER66B LTR ERV1 1 486 0 1030 252 62 12 chr11 133327893 133328218 -15455254 + MER66B-int LTR ERV1 58 398 -6278 955 244 57 28 chr11 133328201 133328484 -15454988 + MER66-int LTR ERV1 271 561 -6115 * 191 187 40 67 chr11 133328484 133328559 -15454913 + L2 LINE L2 2108 2180 -1134 649 160 69 15 chr11 133328559 133328690 -15454782 + MER66-int LTR ERV1 637 774 -5902 719 250 46 28 chr11 133328715 133328931 -15454541 + MER66-int LTR ERV1 885 1104 -5572 490 309 40 0 chr11 133329013 133329139 -15454333 + MER66-int LTR ERV1 2942 3072 -3604 719 271 84 0 chr11 133330352 133330555 -15452917 - MER58A DNA MER1_type 0 224 5 426 285 65 19 chr11 133331745 133332005 -15451467 + L1M4 LINE L1 4891 5162 -984 355 167 29 10 chr11 133332069 133332171 -15451301 + L1M4 LINE L1 5174 5277 -869 21 0 0 0 chr11 133332193 133332214 -15451258 + AT_rich Low_complexity Low_complexity 1 21 0 286 339 55 0 chr11 133332315 133332442 -15451030 + L1MEd LINE L1 537 670 -5449 338 303 103 26 chr11 133333040 133333195 -15450277 + HAL1 LINE L1 2340 2506 -1 1424 258 73 24 chr11 133333521 133334029 -15449443 + L1MEc LINE L1 36 568 -5828 1786 207 11 8 chr11 133334041 133334403 -15449069 - MLT1A1 LTR MaLR -2 363 1 238 204 0 0 chr11 133334415 133334464 -15449008 + MIR SINE MIR 73 121 -141 6847 166 44 26 chr11 133334464 133334816 -15448656 + L1 LINE L1 3115 3459 -2687 2067 128 3 7 chr11 133334816 133335122 -15448350 + AluSq SINE Alu 1 305 -8 6847 166 44 26 chr11 133335122 133335935 -15447537 + L1 LINE L1 3459 4256 -1890 1012 128 11 6 chr11 133335935 133336114 -15447358 + CT-rich Low_complexity Low_complexity 1 180 0 6847 166 44 26 chr11 133336114 133336126 -15447346 + L1 LINE L1 4256 4266 -1880 1778 178 18 0 chr11 133336126 133336412 -15447060 - AluJb SINE Alu -21 291 1 6847 166 44 26 chr11 133336412 133336831 -15446641 + L1 LINE L1 4266 4741 -1405 2921 120 41 28 chr11 133336831 133337366 -15446106 - Tigger3b DNA MER2_type -1 1230 689 2208 119 14 19 chr11 133337397 133337767 -15445705 - L1PB1 LINE L1 -7 6860 6493 255 170 0 0 chr11 133337784 133337831 -15445641 + (TA)n Simple_repeat Simple_repeat 1 47 0 14321 190 22 11 chr11 133337831 133342359 -15441113 - L1PB1 LINE L1 -360 6507 1767 1916 161 7 0 chr11 133342359 133342657 -15440815 - AluSx SINE Alu -1 311 12 14321 190 22 11 chr11 133342657 133343339 -15440133 - L1PB1 LINE L1 -5100 1767 1094 3660 107 5 47 chr11 133343354 133343973 -15439499 + LTR14B LTR ERVK 16 608 0 1553 196 41 3 chr11 133343973 133344336 -15439136 - L1PB1 LINE L1 -5824 1039 663 425 286 12 0 chr11 133344350 133344518 -15438954 - L1PB1 LINE L1 -6593 270 101 824 156 42 0 chr11 133344664 133344856 -15438616 - Tigger3b DNA MER2_type -539 693 494 2682 151 62 2 chr11 133344856 133345327 -15438145 + LTR3b LTR ERVK 1 499 -1 210 227 40 0 chr11 133345394 133345469 -15438003 + (TAAAG)n Simple_repeat Simple_repeat 1 78 0 572 216 111 11 chr11 133345631 133345812 -15437660 + HERVK3 LTR ERVK 68 266 -6977 340 327 0 0 chr11 133345872 133345973 -15437499 + HERVK3 LTR ERVK 580 680 -6563 * 4635 193 40 2 chr11 133345961 133346914 -15436558 + HERVK3 LTR ERVK 1321 2309 -4934 2440 121 10 51 chr11 133346913 133347431 -15436041 + HERVK3 LTR ERVK 2995 5572 -373 * 1146 152 23 18 chr11 133347437 133347472 -15436000 + MER41C-int LTR ERV1 5729 5946 0 1220 71 22 22 chr11 133347472 133347654 -15435818 + HERVK14 LTR ERVK 5578 5759 -186 289 200 0 17 chr11 133347654 133347714 -15435758 + MER41C LTR ERV1 1 59 -495 490 48 0 0 chr11 133347716 133347779 -15435693 + HERVK14 LTR ERVK 5822 5884 -61 2858 136 30 4 chr11 133347797 133348269 -15435203 + LTR3b LTR ERVK 5 488 -12 285 152 0 0 chr11 133348271 133348317 -15435155 + LTR3b LTR ERVK 454 499 -1 2385 120 45 16 chr11 133348318 133348742 -15434730 - Tigger3b DNA MER2_type -733 498 63 2381 173 36 19 chr11 133348771 133348886 -15434586 + L1M2 LINE L1 4739 4851 -1295 2177 127 0 7 chr11 133348886 133349186 -15434286 - AluSx SINE Alu -14 298 1 2381 173 36 19 chr11 133349186 133349602 -15433870 + L1M2 LINE L1 4851 5279 -867 1148 193 32 8 chr11 133349635 133349884 -15433588 - MLT1A1 LTR MaLR -106 259 5 2589 141 10 46 chr11 133349888 133350390 -15433082 + L1M2 LINE L1 5275 5758 -533 5727 118 38 11 chr11 133350780 133351677 -15431795 - MER49 LTR ERV1 0 923 3 2192 149 35 44 chr11 133352014 133352444 -15431028 + MSTB LTR MaLR 1 426 0 768 254 86 21 chr11 133352690 133352970 -15430502 + L2 LINE L2 3016 3313 0 2783 52 5 52 chr11 133353184 133353588 -15429884 + L1PA8 LINE L1 5782 6166 -6 241 368 22 66 chr11 133353978 133354114 -15429358 + L2 LINE L2 3118 3247 -25 29 0 0 0 chr11 133354118 133354147 -15429325 + AT_rich Low_complexity Low_complexity 1 29 0 477 216 96 21 chr11 133354362 133354561 -15428911 + LTR54 LTR ERV1 221 455 -43 524 288 128 19 chr11 133356226 133356453 -15427019 + MIR SINE MIR 19 262 0 704 279 47 26 chr11 133356746 133356979 -15426493 + MIR SINE MIR 25 262 0 4314 90 5 5 chr11 133357501 133358099 -15425373 - MER4A LTR ERV1 -2 598 1 555 331 99 56 chr11 133358117 133358418 -15425054 + L2 LINE L2 2358 2645 -627 743 183 15 0 chr11 133358418 133358549 -15424923 - FLAM_C SINE Alu 0 133 1 555 331 99 56 chr11 133358549 133358965 -15424507 + L2 LINE L2 2645 3089 -183 1000 291 42 24 chr11 133359249 133359630 -15423842 + L1MC4a LINE L1 5260 5647 -2161 247 192 19 0 chr11 133359643 133359695 -15423777 + L1MC4a LINE L1 5697 5749 -2059 252 224 8 104 chr11 133359766 133359891 -15423581 + MER46C DNA MER2_type 1 113 -225 516 325 10 0 chr11 133359975 133360184 -15423288 + Tigger4(Zombi) DNA MER2_type 554 764 -1967 1469 167 65 7 chr11 133360398 133360673 -15422799 - AluJo SINE Alu -21 291 1 229 333 26 26 chr11 133360928 133361084 -15422388 + Tigger4(Zombi) DNA MER2_type 1693 1848 -883 1814 92 121 10 chr11 133361093 133361449 -15422023 - LTR7 LTR ERV1 0 450 1 233 191 44 0 chr11 133361913 133361981 -15421491 + MER46C DNA MER2_type 114 184 -154 1713 184 16 29 chr11 133361988 133362303 -15421169 + AluJb SINE Alu 1 311 -1 4177 222 102 40 chr11 133362466 133364001 -15419471 + L1M4 LINE L1 14 1643 -4899 811 127 51 6 chr11 133364008 133364165 -15419307 + L1MB7 LINE L1 6021 6184 0 312 244 104 15 chr11 133364167 133364368 -15419104 + L1MC4a LINE L1 5812 6030 -1778 839 227 51 14 chr11 133364907 133365123 -15418349 - MER58A DNA MER1_type 0 224 1 402 284 21 50 chr11 133365457 133365598 -15417874 + MIR3 SINE MIR 51 187 -21 321 290 91 39 chr11 133367308 133367572 -15415900 - L1ME4a LINE L1 -195 5926 5645 548 261 123 10 chr11 133367600 133367795 -15415677 - MIR SINE MIR -13 249 33 2077 81 60 3 chr11 133367828 133368113 -15415359 + AluSg SINE Alu 2 302 -8 1171 148 15 5 chr11 133369075 133369278 -15414194 + L1PB4 LINE L1 5945 6149 -7 885 243 112 15 chr11 133371503 133371841 -15411631 - MLT1J2 LTR MaLR -71 379 9 1104 208 57 70 chr11 133372667 133372836 -15410636 + MLT1A1 LTR MaLR 1 171 -194 2487 62 0 13 chr11 133372836 133373140 -15410332 - AluY SINE Alu -11 300 1 1104 208 57 70 chr11 133373140 133373340 -15410132 + MLT1A1 LTR MaLR 171 365 0 253 324 42 63 chr11 133373443 133373585 -15409887 + L2 LINE L2 3134 3272 0 203 293 0 17 chr11 133373600 133373658 -15409814 - L2 LINE L2 -2 3270 3214 195 215 449 9 chr11 133374031 133374138 -15409334 + MIR SINE MIR 20 173 -89 508 152 0 0 chr11 133375055 133375134 -15408338 + AluJ/FRAM SINE Alu 217 295 -17 2813 210 52 33 chr11 133375345 133376407 -15407065 - L1ME2 LINE L1 -16 6148 5070 898 204 84 65 chr11 133376410 133376703 -15406769 - L1ME2 LINE L1 -2621 3525 3239 1959 163 0 22 chr11 133376703 133377022 -15406450 - AluJb SINE Alu 0 312 1 898 204 84 65 chr11 133377022 133377048 -15406424 - L1ME2 LINE L1 -2907 3239 3215 1351 181 42 125 chr11 133377048 133377456 -15406016 + MLT1A2 LTR MaLR 1 374 0 898 204 84 65 chr11 133377456 133377507 -15405965 - L1ME2 LINE L1 -2931 3215 3166 2171 114 3 16 chr11 133377507 133377815 -15405657 - AluSx SINE Alu -8 304 1 898 204 84 65 chr11 133377815 133378064 -15405408 - L1ME2 LINE L1 -2980 3166 2887 1248 286 65 51 chr11 133378064 133378651 -15404821 + MLT2F LTR ERVL 1 595 -68 778 313 61 12 chr11 133378969 133379311 -15404161 + ERVL-F LTR ERVL 318 676 -5088 358 277 82 48 chr11 133379444 133379650 -15403822 - MIR SINE MIR -3 259 47 196 346 56 9 chr11 133379943 133380050 -15403422 - MIR3 SINE MIR -3 205 94 2357 103 6 0 chr11 133380413 133380724 -15402748 + AluSp SINE Alu 1 313 0 512 237 22 22 chr11 133381036 133381175 -15402297 - L2 LINE L2 -221 3092 2954 216 231 46 15 chr11 133381902 133381967 -15401505 - MIR3 SINE MIR -4 204 138 1989 92 113 14 chr11 133382637 133382919 -15400553 + AluSg SINE Alu 1 310 0 260 273 26 0 chr11 133383290 133383367 -15400105 - L2 LINE L2 -3 3310 3232 322 311 71 34 chr11 133383533 133383829 -15399643 - L2 LINE L2 -341 2973 2667 613 316 131 18 chr11 133383839 133384497 -15398975 - L2 LINE L2 -1065 2249 1518 2323 89 0 7 chr11 133384655 133384995 -15398477 - AluSq SINE Alu 0 338 1 891 145 63 0 chr11 133386072 133386231 -15397241 - L1MA10 LINE L1 -3 6331 6163 1152 163 0 0 chr11 133386748 133386926 -15396546 - AluJb SINE Alu 0 312 135 373 309 80 50 chr11 133387708 133388168 -15395304 - L2 LINE L2 -6 3307 2834 401 336 69 9 chr11 133389276 133389508 -15393964 - MIR SINE MIR -16 246 1 255 228 25 13 chr11 133389696 133389775 -15393697 + (TA)n Simple_repeat Simple_repeat 1 80 0 356 247 43 11 chr11 133389815 133389908 -15393564 - MIR SINE MIR -150 112 17 224 364 38 38 chr11 133389974 133390158 -15393314 + L3b LINE CR1 1396 1579 -4 544 318 95 21 chr11 133390588 133391228 -15392244 - L2 LINE L2 -4 3309 2617 829 71 45 27 chr11 133391741 133392141 -15391331 + (CA)n Simple_repeat Simple_repeat 1 407 0 582 323 115 56 chr11 133392375 133393270 -15390202 + L2 LINE L2 1795 2742 -572 2389 89 0 0 chr11 133393277 133393581 -15389891 + AluY SINE Alu 1 304 -7 415 328 120 16 chr11 133394101 133394418 -15389054 + L2 LINE L2 2904 3253 -19 1488 173 0 35 chr11 133394449 133394733 -15388739 + AluJo SINE Alu 15 288 -24 467 280 42 12 chr11 133394798 133394966 -15388506 + MIR SINE MIR 34 206 -56 852 139 15 0 chr11 133395157 133395294 -15388178 + L1MCa LINE L1 2048 2186 -4240 * 1445 227 12 12 chr11 133395274 133395617 -15387855 + L1MC1 LINE L1 5060 5402 -744 1131 184 0 71 chr11 133395617 133395856 -15387616 + AluJo SINE Alu 1 222 -90 201 74 0 0 chr11 133395867 133395894 -15387578 + (A)n Simple_repeat Simple_repeat 1 27 0 5717 147 27 5 chr11 133395894 133396817 -15386655 + L1MC1 LINE L1 5385 6327 -6 246 232 0 0 chr11 133397982 133398038 -15385434 + CT-rich Low_complexity Low_complexity 1 56 0 296 235 204 10 chr11 133398193 133398291 -15385181 - L2 LINE L2 -14 3258 3142 241 263 101 10 chr11 133399185 133399284 -15384188 - L3 LINE CR1 -625 952 845 444 302 99 5 chr11 133399872 133400074 -15383398 - MIR SINE MIR -5 257 37 305 266 63 56 chr11 133402358 133402583 -15380889 + MLT1K LTR MaLR 11 264 -324 405 371 58 27 chr11 133403182 133403476 -15379996 + L3 LINE CR1 31 333 -1244 2206 110 0 13 chr11 133403510 133403811 -15379661 - AluSg SINE Alu -13 297 1 217 280 11 21 chr11 133403817 133403910 -15379562 + L2 LINE L2 2780 2871 -443 1949 162 6 55 chr11 133404127 133404168 -15379304 + L1MB1 LINE L1 5800 5841 -327 2186 108 3 16 chr11 133404168 133404473 -15378999 + AluSx SINE Alu 11 311 -1 1949 162 6 55 chr11 133404473 133404796 -15378676 + L1MB1 LINE L1 5841 6146 -22 1180 165 169 4 chr11 133404924 133405190 -15378282 + MER33 DNA MER1_type 1 310 -14 2351 88 0 3 chr11 133405196 133405504 -15377968 - AluSc SINE Alu -2 307 1 1773 170 10 16 chr11 133405560 133405872 -15377600 - AluJb SINE Alu -1 311 2 225 287 8 124 chr11 133405875 133406004 -15377468 + L2 LINE L2 3200 3313 0 2207 83 20 30 chr11 133406010 133406312 -15377160 - AluY SINE Alu -12 299 1 801 169 25 12 chr11 133406531 133406691 -15376781 - MER104 DNA Tc2 -5 175 14 204 282 28 0 chr11 133407804 133407875 -15375597 - MER5A DNA MER1_type -46 143 71 * 339 302 50 44 chr11 133407862 133408044 -15375428 + L3 LINE CR1 1395 1577 0 3507 144 29 75 chr11 133408973 133409697 -15373775 + LTR8 LTR ERV1 1 691 0 1750 189 59 68 chr11 133410278 133410749 -15372723 + MLT1C LTR MaLR 1 467 0 244 177 81 0 chr11 133411362 133411424 -15372048 - MLT1K LTR MaLR -7 581 515 2237 130 12 15 chr11 133412162 133412500 -15370972 + MER1B DNA MER1_type 1 337 0 510 251 57 17 chr11 133412694 133412869 -15370603 + MIR SINE MIR 49 230 -32 208 139 0 0 chr11 133414716 133414752 -15368720 + (TTA)n Simple_repeat Simple_repeat 3 38 0 443 269 15 78 chr11 133414769 133415037 -15368435 - L1ME4a LINE L1 -23 6098 5848 2250 127 0 0 chr11 133416226 133416533 -15366939 - AluSx SINE Alu -5 307 1 557 276 97 102 chr11 133416770 133417318 -15366154 + MLT1K LTR MaLR 12 556 -32 405 294 63 63 chr11 133417788 133418009 -15365463 + L2 LINE L2 3050 3270 -2 4562 171 43 14 chr11 133418233 133419042 -15364430 + MER21B LTR ERV1 1 833 -30 1913 152 10 3 chr11 133419574 133419871 -15363601 - AluJb SINE Alu -13 299 1 425 299 43 0 chr11 133420723 133420887 -15362585 + MIR SINE MIR 63 233 -29 2134 71 45 4 chr11 133421081 133421391 -15362081 + AluY SINE Alu 1 321 0 317 321 93 12 chr11 133422021 133422183 -15361289 - MER5B DNA MER1_type -3 175 1 408 325 97 4 chr11 133422589 133422817 -15360655 + LTR16B LTR ERVL 45 293 -171 1895 169 3 0 chr11 133422920 133423210 -15360262 - AluJb SINE Alu -21 291 1 23 0 0 0 chr11 133423221 133423244 -15360228 + AT_rich Low_complexity Low_complexity 1 23 0 309 208 0 0 chr11 133426168 133426221 -15357251 + LTR16B LTR ERVL 399 451 -13 495 237 0 0 chr11 133426482 133426575 -15356897 - MIR SINE MIR -112 150 58 270 208 0 0 chr11 133426637 133426685 -15356787 + MIR SINE MIR 2 49 -213 424 299 55 16 chr11 133426764 133426891 -15356581 - L2 LINE L2 -5 3267 3136 256 293 120 23 chr11 133427015 133427148 -15356324 + L2 LINE L2 2939 3084 -188 199 229 28 119 chr11 133427177 133427286 -15356186 + L2 LINE L2 3173 3271 -1 3252 73 27 35 chr11 133427301 133427752 -15355720 - MLT2A2 LTR ERVL -6 447 1 321 326 82 15 chr11 133428543 133428678 -15354794 + MIR SINE MIR 113 256 -6 334 220 12 36 chr11 133429274 133429380 -15354092 + MER5A DNA MER1_type 4 118 -71 619 250 51 97 chr11 133429721 133429944 -15353528 - MIR SINE MIR -49 213 3 398 297 14 36 chr11 133430391 133430529 -15352943 - MER5B DNA MER1_type -2 176 42 269 341 83 37 chr11 133430881 133431098 -15352374 - L3b LINE CR1 -70 1513 1287 1984 150 95 56 chr11 133432346 133432917 -15350555 - MER4A LTR ERV1 -19 446 1 402 79 0 32 chr11 133432932 133432995 -15350477 - MER4A-int LTR ERV1 -6 6592 6532 1439 292 40 58 chr11 133433510 133433753 -15349719 - MER4A-int LTR ERV1 -447 6675 6429 2193 126 126 26 chr11 133433753 133434142 -15349330 - MSTA LTR MaLR 0 428 1 1439 292 40 58 chr11 133434142 133434985 -15348487 - MER4A-int LTR ERV1 -693 6429 5633 327 274 12 67 chr11 133435324 133435488 -15347984 - MER4A-int LTR ERV1 -1784 2863 2709 269 185 19 0 chr11 133436226 133436280 -15347192 - MER4A-int LTR ERV1 -5794 804 750 287 315 28 65 chr11 133436397 133436613 -15346859 - MER4A-int LTR ERV1 -6182 576 369 819 176 34 44 chr11 133436638 133437082 -15346390 - MER4A-int LTR ERV1 -5927 671 109 2164 136 84 54 chr11 133437186 133437754 -15345718 - MER4A LTR ERV1 -20 445 1 1720 162 96 47 chr11 133437956 133438629 -15344843 + LTR48 LTR ERV1 1 707 0 1615 173 51 0 chr11 133438750 133439045 -15344427 + AluJo SINE Alu 1 310 -2 1888 230 69 64 chr11 133439829 133440341 -15343131 + L1MDb LINE L1 794 1302 -5104 2193 124 3 3 chr11 133440341 133440647 -15342825 + AluSx SINE Alu 1 306 -6 1888 230 69 64 chr11 133440647 133440978 -15342494 + L1MDb LINE L1 1302 1609 -4797 192 40 0 0 chr11 133440978 133441003 -15342469 + (GA)n Simple_repeat Simple_repeat 1 25 0 1888 230 69 64 chr11 133441003 133441043 -15342429 + L1MDb LINE L1 1609 1647 -4759 577 250 60 20 chr11 133441015 133441267 -15342205 + L1MDb LINE L1 3382 3643 -2763 * 332 243 19 61 chr11 133441324 133441538 -15341934 + L1MC5 LINE L1 7452 7656 -305 803 165 98 0 chr11 133441540 133441673 -15341799 + AluJo SINE Alu 2 147 -165 1125 173 5 0 chr11 133441676 133441873 -15341599 + L1PBa LINE L1 3 200 -6663 13660 118 90 14 chr11 133441873 133444423 -15339049 + L1PBa LINE L1 634 3410 -3452 2295 113 3 0 chr11 133444423 133444734 -15338738 - AluSx SINE Alu 0 312 1 13660 118 90 14 chr11 133444734 133444973 -15338499 + L1PBa LINE L1 3410 3629 -3233 538 163 23 0 chr11 133445322 133445408 -15338064 - AluJ SINE Alu -30 282 195 762 152 54 0 chr11 133445411 133445523 -15337949 - AluJ SINE Alu -191 121 4 2204 69 52 0 chr11 133445536 133445824 -15337648 - L1PB1 LINE L1 -1 6150 5848 184 314 29 0 chr11 133446000 133446070 -15337402 - L2 LINE L2 -2 3311 3240 185 305 221 26 chr11 133446962 133447116 -15336356 - MER5A DNA MER1_type -5 184 1 1809 135 73 43 chr11 133447193 133447520 -15335952 - MER1B DNA MER1_type 0 337 1 21 0 0 0 chr11 133447755 133447776 -15335696 + AT_rich Low_complexity Low_complexity 1 21 0 1218 185 28 0 chr11 133447776 133447992 -15335480 - AluJo SINE Alu -90 222 1 652 262 15 22 chr11 133448273 133448597 -15334875 + L1MC4a LINE L1 5703 6023 -141 1310 268 107 28 chr11 133449045 133449542 -15333930 + MLT1H LTR MaLR 1 536 -13 3155 141 15 23 chr11 133449637 133449698 -15333774 + MER34 LTR ERV1 29 89 -453 2330 86 3 3 chr11 133449698 133450000 -15333472 + AluSc SINE Alu 1 302 -7 3155 141 15 23 chr11 133450000 133450456 -15333016 + MER34 LTR ERV1 89 542 0 2538 89 0 3 chr11 133450584 133450920 -15332552 + L1PB1 LINE L1 5446 5780 -371 270 0 0 0 chr11 133450922 133450952 -15332520 + (TA)n Simple_repeat Simple_repeat 2 31 0 2255 90 32 6 chr11 133450952 133451263 -15332209 + L1PB1 LINE L1 5832 6150 -1 334 359 41 24 chr11 133451326 133451496 -15331976 - L2 LINE L2 -190 3082 2910 506 189 32 0 chr11 133451564 133451659 -15331813 + MER5A DNA MER1_type 9 106 -83 417 274 53 48 chr11 133452033 133452220 -15331252 + MIR SINE MIR 36 226 -36 2424 83 3 0 chr11 133453756 133454056 -15329416 + AluSp SINE Alu 1 301 -12 183 114 0 0 chr11 133454111 133454146 -15329326 + (T)n Simple_repeat Simple_repeat 1 35 0 2114 86 25 0 chr11 133454200 133454478 -15328994 - AluSg SINE Alu -25 285 1 357 230 95 0 chr11 133454573 133454647 -15328825 + MLT1J LTR MaLR 3 83 -428 1277 192 22 69 chr11 133454661 133454979 -15328493 - MLT1D LTR MaLR -198 307 5 340 248 30 12 chr11 133454982 133455101 -15328371 + MLT1J LTR MaLR 64 169 -281 271 213 149 21 chr11 133455195 133455289 -15328183 + MLT1J LTR MaLR 349 454 -57 566 308 35 15 chr11 133455328 133455526 -15327946 + L3 LINE CR1 396 597 -980 353 318 60 13 chr11 133455541 133455692 -15327780 + L3 LINE CR1 1026 1183 -394 733 141 107 16 chr11 133455905 133456026 -15327446 + FLAM_A SINE Alu 2 133 0 180 0 0 0 chr11 133456860 133456880 -15326592 + (CA)n Simple_repeat Simple_repeat 1 20 0 415 280 62 20 chr11 133457585 133457762 -15325710 - MIR SINE MIR -67 141 1 268 190 0 70 chr11 133458587 133458687 -15324785 + A-rich Low_complexity Low_complexity 2 94 0 687 221 36 71 chr11 133459168 133459448 -15324024 - HAL1 LINE L1 -1 2506 2237 268 232 21 42 chr11 133459668 133459763 -15323709 - HAL1 LINE L1 -404 2103 2011 938 308 62 75 chr11 133459810 133459861 -15323611 + L3 LINE CR1 763 813 -764 585 244 0 24 chr11 133459861 133459984 -15323488 + FLAM_A SINE Alu 2 121 -12 938 308 62 75 chr11 133459984 133460288 -15323184 + L3 LINE CR1 813 1119 -458 1854 166 0 7 chr11 133460288 133460589 -15322883 + AluJb SINE Alu 1 299 -13 938 308 62 75 chr11 133460589 133460630 -15322842 + L3 LINE CR1 1119 1159 -418 1991 110 0 43 chr11 133460630 133460931 -15322541 + AluSc SINE Alu 21 308 -1 938 308 62 75 chr11 133460931 133461172 -15322300 + L3 LINE CR1 1159 1394 -183 531 294 89 6 chr11 133461183 133461363 -15322109 + MLT1J LTR MaLR 1 195 -316 580 349 24 35 chr11 133461767 133462023 -15321449 + L2 LINE L2 2544 2797 -517 2611 209 34 12 chr11 133462023 133462517 -15320955 + MLT1D LTR MaLR 1 505 0 580 349 24 35 chr11 133462517 133462601 -15320871 + L2 LINE L2 2797 2880 -434 2588 87 104 60 chr11 133463024 133463437 -15320035 + MSTB1 LTR MaLR 2 432 0 4307 178 59 42 chr11 133463507 133463770 -15319702 - L1MB8 LINE L1 -5 6173 5916 1735 189 3 3 chr11 133463770 133464072 -15319400 + AluJo SINE Alu 1 302 -10 4307 178 59 42 chr11 133464072 133465048 -15318424 - L1MB8 LINE L1 -262 5916 4885 1367 131 0 36 chr11 133465048 133465269 -15318203 - L1PB2 LINE L1 -2 6149 5937 4307 178 59 42 chr11 133465269 133465742 -15317730 - L1MB8 LINE L1 -1293 4885 4422 398 342 63 8 chr11 133466398 133466635 -15316837 + MIR SINE MIR 1 250 -12 570 326 110 11 chr11 133466644 133467018 -15316454 + L1MEc LINE L1 9 419 -5977 434 294 102 29 chr11 133467334 133467670 -15315802 + L1MEc LINE L1 631 941 -5455 1641 211 71 45 chr11 133467670 133467907 -15315565 + MLT1D LTR MaLR 1 230 -275 1758 192 0 13 chr11 133467907 133468043 -15315429 + AluJb SINE Alu 1 137 -175 2110 124 0 0 chr11 133468043 133468334 -15315138 + AluSx SINE Alu 1 291 -21 1758 192 0 13 chr11 133468334 133468499 -15314973 + AluJb SINE Alu 137 298 -14 1641 211 71 45 chr11 133468499 133468753 -15314719 + MLT1D LTR MaLR 230 505 0 24 0 0 0 chr11 133468835 133468859 -15314613 + AT_rich Low_complexity Low_complexity 1 24 0 722 196 88 50 chr11 133468909 133469149 -15314323 + L1M4 LINE L1 4041 4289 -1857 3556 124 49 36 chr11 133469151 133469738 -15313734 - LTR49 LTR ERV1 0 595 1 3638 120 26 12 chr11 133469738 133470313 -15313159 - LTR49-int LTR ERV1 0 6331 5749 5268 165 15 9 chr11 133470313 133471206 -15312266 + MER4D LTR ERV1 1 898 -5 658 65 0 22 chr11 133471222 133471314 -15312158 - LTR49-int LTR ERV1 -580 5751 5662 289 176 186 49 chr11 133471314 133471416 -15312056 - LTR37A LTR ERV1 -307 119 4 2379 99 0 0 chr11 133471429 133471733 -15311739 - AluSq SINE Alu -9 304 1 9424 123 46 68 chr11 133471733 133473542 -15309930 - LTR49-int LTR ERV1 -774 5557 3789 610 168 11 0 chr11 133473543 133473638 -15309834 + AluJ/FLAM SINE Alu 2 97 -215 2423 117 51 57 chr11 133473638 133473878 -15309594 - LTR49 LTR ERV1 -17 578 341 2294 112 0 0 chr11 133473878 133474181 -15309291 + AluSx SINE Alu 1 303 -9 2423 117 51 57 chr11 133474181 133474411 -15309061 - LTR49 LTR ERV1 -254 341 111 1142 123 0 6 chr11 133474415 133474585 -15308887 - LTR49-int LTR ERV1 -2162 4169 4001 728 69 30 0 chr11 133474587 133474688 -15308784 - LTR49 LTR ERV1 -491 104 1 325 281 174 5 chr11 133474688 133474884 -15308588 + L1M4 LINE L1 4288 4516 -1630 243 294 78 72 chr11 133475065 133475370 -15308102 + L2 LINE L2 2712 3022 -250 2148 130 0 0 chr11 133475544 133475837 -15307635 + AluSx SINE Alu 6 298 -14 472 121 0 0 chr11 133476155 133476221 -15307251 + LTR35 LTR ERV1 1 66 -552 1338 199 23 63 chr11 133476224 133476619 -15306853 - MLT2B3 LTR ERVL -1 553 183 425 113 0 0 chr11 133476622 133476693 -15306779 - Alu SINE Alu -1 311 241 531 233 8 23 chr11 133476805 133476934 -15306538 + LTR35 LTR ERV1 492 618 0 649 234 23 0 chr11 133476940 133477068 -15306404 + MER45A DNA AcHobo 4 134 -44 249 238 127 0 chr11 133477255 133477318 -15306154 - MIR3 SINE MIR -27 181 111 533 254 65 79 chr11 133477672 133477963 -15305509 - L3 LINE CR1 -161 1416 1130 1460 141 14 71 chr11 133478067 133478350 -15305122 + AluJb SINE Alu 24 290 -22 846 143 16 0 chr11 133478761 133478887 -15304585 - FLAM_C SINE Alu -5 128 1 28 0 0 0 chr11 133478895 133478923 -15304549 + AT_rich Low_complexity Low_complexity 1 28 0 2074 110 20 0 chr11 133479023 133479315 -15304157 - AluSx SINE Alu -14 298 1 30 45 0 0 chr11 133479428 133479472 -15304000 + AT_rich Low_complexity Low_complexity 1 44 0 189 282 0 0 chr11 133479709 133479748 -15303724 - L2 LINE L2 -173 3099 3061 261 290 0 14 chr11 133480350 133480419 -15303053 - L2 LINE L2 -4 3309 3242 413 238 23 126 chr11 133480446 133480538 -15302934 - MARNA DNA Mariner -32 554 495 1927 110 64 0 chr11 133480538 133480820 -15302652 - AluSg SINE Alu -10 300 1 413 238 23 126 chr11 133480820 133480941 -15302531 - MARNA DNA Mariner -91 495 363 811 187 75 11 chr11 133480995 133481182 -15302290 + L1ME2 LINE L1 5660 5858 -326 854 170 114 125 chr11 133481193 133481586 -15301886 + MER41B LTR ERV1 100 365 -113 605 250 62 0 chr11 133481637 133481797 -15301675 + MER66A LTR ERV1 299 468 -10 1031 167 31 18 chr11 133481802 133482102 -15301370 + L1ME2 LINE L1 5840 6177 -1 2049 110 0 0 chr11 133482119 133482400 -15301072 + AluSx SINE Alu 13 293 -19 361 226 40 130 chr11 133482409 133482586 -15300886 - MARNA DNA Mariner -350 236 76 4344 127 22 11 chr11 133485087 133485420 -15298052 - L1MB2 LINE L1 0 6171 5843 1695 181 3 0 chr11 133485420 133485718 -15297754 - AluJo SINE Alu -13 299 1 4344 127 22 11 chr11 133485718 133486101 -15297371 - L1MB2 LINE L1 -328 5843 5447 1058 227 72 38 chr11 133486213 133486618 -15296854 + L2 LINE L2 2737 3148 -165 201 132 0 0 chr11 133486656 133486694 -15296778 + (CAAT)n Simple_repeat Simple_repeat 2 39 0 313 319 172 0 chr11 133486889 133487093 -15296379 + L2 LINE L2 2453 2691 -623 2141 169 58 46 chr11 133487096 133487270 -15296202 + MSTB LTR MaLR 7 177 -249 1667 163 7 10 chr11 133487270 133487570 -15295902 + AluJb SINE Alu 3 301 -11 2141 169 58 46 chr11 133487570 133487810 -15295662 + MSTB LTR MaLR 177 426 0 2250 115 8 77 chr11 133487941 133488137 -15295335 - MSTB LTR MaLR -62 364 207 2069 79 0 70 chr11 133488137 133488453 -15295019 - AluSc SINE Alu -15 294 1 2250 115 8 77 chr11 133488453 133488647 -15294825 - MSTB LTR MaLR -219 207 1 265 300 163 21 chr11 133488649 133488839 -15294633 + L2 LINE L2 2849 3065 -248 537 236 71 11 chr11 133488884 133489066 -15294406 - L1ME LINE L1 -336 5785 5593 23 54 0 0 chr11 133489870 133489907 -15293565 + GC_rich Low_complexity Low_complexity 1 37 0 271 221 92 80 chr11 133490007 133490170 -15293302 + L2 LINE L2 3092 3256 -57 213 94 0 0 chr11 133490346 133490378 -15293094 + (TGGA)n Simple_repeat Simple_repeat 3 34 0 194 387 0 11 chr11 133490599 133490692 -15292780 - MIR3 SINE MIR -51 157 66 396 293 24 24 chr11 133491434 133491598 -15291874 + MER117 DNA MER1_type 34 197 0 1557 159 56 36 chr11 133491661 133491963 -15291509 - AluJb SINE Alu -4 308 1 2132 104 3 0 chr11 133493315 133493613 -15289859 - AluSx SINE Alu -12 300 2 696 288 123 51 chr11 133493768 133494181 -15289291 + MLT1K LTR MaLR 146 588 0 1706 180 0 0 chr11 133495095 133495389 -15288083 + AluJo SINE Alu 1 294 -18 285 213 7 167 chr11 133495581 133495659 -15287813 - MIR SINE MIR -1 261 217 2052 95 3 14 chr11 133495659 133495944 -15287528 + AluSq SINE Alu 1 282 -31 285 213 7 167 chr11 133495944 133496015 -15287457 - MIR SINE MIR -45 217 136 878 157 15 6 chr11 133496033 133496278 -15287194 + L1MC/D LINE L1 5184 5431 -743 523 253 110 44 chr11 133496332 133496514 -15286958 - MIR SINE MIR -64 198 5 1956 138 3 16 chr11 133496731 133497061 -15286411 + AluSx SINE Alu 1 326 0 917 271 98 10 chr11 133497189 133497614 -15285858 - LTR33 LTR ERVL -28 493 1 352 246 0 0 chr11 133498736 133498805 -15284667 + MIR SINE MIR 13 81 -181 235 367 106 35 chr11 133499462 133499661 -15283811 + L3b LINE CR1 1345 1557 -26 460 310 10 13 chr11 133499671 133499874 -15283598 + MIR SINE MIR 5 256 -6 247 298 140 0 chr11 133500718 133500832 -15282640 - L3 LINE CR1 -42 1535 1406 22 0 0 0 chr11 133500835 133500857 -15282615 + AT_rich Low_complexity Low_complexity 1 22 0 3092 228 76 24 chr11 133500859 133501287 -15282185 - L1ME2 LINE L1 -13 6151 5746 2166 109 0 0 chr11 133501287 133501591 -15281881 + AluSg SINE Alu 1 304 -6 3092 228 76 24 chr11 133501591 133502026 -15281446 - L1ME2 LINE L1 -418 5746 5244 473 280 101 48 chr11 133502043 133502250 -15281222 + MIR SINE MIR 30 247 -15 302 279 39 48 chr11 133502276 133502380 -15281092 - L3 LINE CR1 -316 1261 1159 3172 136 134 31 chr11 133502605 133502636 -15280836 + MER39 LTR ERV1 1 27 -680 1851 136 0 4 chr11 133502636 133502943 -15280529 + AluSx SINE Alu 5 310 0 3172 136 134 31 chr11 133502943 133503550 -15279922 + MER39 LTR ERV1 27 706 -1 2336 65 0 26 chr11 133503783 133504093 -15279379 + AluY SINE Alu 1 302 -9 905 192 45 5 chr11 133505215 133505413 -15278059 - MER3 DNA MER1_type -1 208 3 247 317 219 30 chr11 133508089 133508423 -15275049 - L2 LINE L2 -10 3262 2866 2129 91 0 0 chr11 133508478 133508764 -15274708 - AluSx SINE Alu -13 299 14 548 138 57 24 chr11 133509508 133509631 -15273841 + MER94 DNA DNA 7 133 -1 207 242 16 16 chr11 133509772 133509834 -15273638 - L3b LINE CR1 -200 1383 1322 337 292 77 23 chr11 133510676 133510806 -15272666 + MIR3 SINE MIR 69 187 -21 21 0 0 0 chr11 133511329 133511350 -15272122 + AT_rich Low_complexity Low_complexity 1 21 0 2411 45 3 0 chr11 133511642 133511929 -15271543 - AluY SINE Alu -23 288 1 315 85 0 0 chr11 133513024 133513071 -15270401 + (TG)n Simple_repeat Simple_repeat 2 48 0 503 269 93 23 chr11 133513249 133513465 -15270007 - MIR SINE MIR 0 262 32 1874 136 6 22 chr11 133515420 133515736 -15267736 + AluSx SINE Alu 1 311 -1 180 269 192 39 chr11 133516048 133516126 -15267346 - L3b LINE CR1 -131 1452 1363 1913 145 0 0 chr11 133516273 133516570 -15266902 - AluJb SINE Alu -12 300 4 312 225 17 150 chr11 133516946 133517119 -15266353 + MIR SINE MIR 46 195 -67 391 283 130 62 chr11 133517635 133517942 -15265530 - L2 LINE L2 0 3272 2945 209 349 53 61 chr11 133518482 133518614 -15264858 - MIR SINE MIR -60 148 18 478 239 82 13 chr11 133518643 133518827 -15264645 - MIR SINE MIR -56 206 12 30 69 0 0 chr11 133519397 133519455 -15264017 + AT_rich Low_complexity Low_complexity 1 58 0 371 149 15 0 chr11 133519605 133519672 -15263800 - L1MA5 LINE L1 -39 6261 6194 222 235 25 17 chr11 133521103 133521222 -15262250 + (CGCGG)n Simple_repeat Simple_repeat 4 123 0 21 0 0 0 chr11 133522097 133522118 -15261354 + AT_rich Low_complexity Low_complexity 1 21 0 337 292 77 23 chr11 133522641 133522771 -15260701 - MIR3 SINE MIR -21 187 69 207 242 16 16 chr11 133523613 133523675 -15259797 + L3b LINE CR1 1322 1383 -200 548 138 57 24 chr11 133523816 133523939 -15259533 - MER94 DNA DNA -1 133 7 2267 91 0 0 chr11 133524684 133524970 -15258502 + AluSx SINE Alu 14 299 -13 259 317 219 30 chr11 133525025 133525359 -15258113 + L2 LINE L2 2866 3262 -10 915 192 45 5 chr11 133528035 133528233 -15255239 + MER3 DNA MER1_type 3 208 -1 2428 80 3 7 chr11 133529355 133529657 -15253815 - AluSg SINE Alu -9 301 1 411 303 0 66 chr11 133530910 133531062 -15252410 - MIR SINE MIR -70 192 51 465 345 67 60 chr11 133531209 133531539 -15251933 + L2 LINE L2 2864 3199 -73 2110 125 0 0 chr11 133531539 133531834 -15251638 - AluJo SINE Alu -4 308 14 465 345 67 60 chr11 133531834 133531906 -15251566 + L2 LINE L2 3199 3269 -3 196 329 51 0 chr11 133532139 133532218 -15251254 + MIR3 SINE MIR 111 193 -15 183 132 53 0 chr11 133533373 133533411 -15250061 + L2 LINE L2 3210 3249 -23 234 299 68 43 chr11 133533858 133533975 -15249497 + L3b LINE CR1 1343 1462 -121 1659 177 36 24 chr11 133533975 133534309 -15249163 - L1MB5 LINE L1 -6 6168 5831 2298 99 0 0 chr11 133534496 133534790 -15248682 - AluY SINE Alu -17 294 1 1930 61 0 0 chr11 133535981 133536210 -15247262 - AluY SINE Alu 0 311 83 2196 120 0 0 chr11 133537392 133537684 -15245788 - AluSx SINE Alu -20 292 1 385 256 102 6 chr11 133538139 133538315 -15245157 - MLT1J1 LTR MaLR -248 198 6 1776 160 0 45 chr11 133539639 133539952 -15243520 - AluJb SINE Alu -13 299 1 867 281 44 17 chr11 133539961 133540412 -15243060 - Charlie8 DNA MER1_type -2199 218 1 991 180 12 0 chr11 133540962 133541134 -15242338 + FRAM SINE Alu 1 174 -2 249 293 6 57 chr11 133541279 133541438 -15242034 - MIR SINE MIR -68 194 46 423 189 211 11 chr11 133541471 133541566 -15241906 - MER81 DNA DNA 0 114 1 1979 93 4 22 chr11 133541676 133541944 -15241528 + AluSp SINE Alu 40 302 -11 2313 119 0 6 chr11 133542574 133542885 -15240587 + AluSx SINE Alu 1 309 -3 429 243 84 9 chr11 133543023 133543130 -15240342 + MIR SINE MIR 22 136 -126 328 258 56 0 chr11 133543173 133543262 -15240210 + MER5A DNA MER1_type 16 109 -80 181 87 0 0 chr11 133543352 133543375 -15240097 + MIR SINE MIR 201 223 -39 1633 169 31 63 chr11 133543938 133544257 -15239215 + AluJb SINE Alu 1 309 -3 280 343 142 39 chr11 133544258 133544462 -15239010 + L3b LINE CR1 1176 1400 -183 313 290 81 40 chr11 133544659 133544783 -15238689 + MIR3 SINE MIR 15 143 -65 259 220 0 0 chr11 133544877 133544927 -15238545 - L2 LINE L2 0 3313 3264 245 175 0 0 chr11 133545066 133545106 -15238366 - MIR3 SINE MIR -3 205 166 230 360 35 0 chr11 133545507 133545593 -15237879 + L2 LINE L2 3174 3262 -10 724 106 0 30 chr11 133545648 133545780 -15237692 + (TCCC)n Simple_repeat Simple_repeat 4 131 0 1750 173 0 0 chr11 133545782 133546054 -15237418 - AluJo SINE Alu -40 272 1 2304 89 7 13 chr11 133546714 133547018 -15236454 + AluSq SINE Alu 5 306 -7 410 272 0 7 chr11 133547605 133547884 -15235588 + (TG)n Simple_repeat Simple_repeat 1 276 0 182 165 0 78 chr11 133547896 133547999 -15235473 + (CGTG)n Simple_repeat Simple_repeat 2 96 0 593 185 92 0 chr11 133549103 133549276 -15234196 + L1MA8 LINE L1 6100 6288 -3 666 206 69 8 chr11 133552237 133552368 -15231104 - FRAM SINE Alu -30 146 8 2144 137 0 3 chr11 133553881 133554180 -15229292 - AluSx SINE Alu -14 298 1 505 272 33 33 chr11 133554519 133554703 -15228769 + MIR SINE MIR 77 260 -2 793 134 0 78 chr11 133555484 133555594 -15227878 + AluJo/FLAM SINE Alu 3 101 -201 2614 71 0 0 chr11 133555594 133555904 -15227568 - AluY SINE Alu -1 310 1 793 134 0 78 chr11 133555904 133555935 -15227537 + AluJo/FLAM SINE Alu 101 133 -169 315 85 0 0 chr11 133556999 133557046 -15226426 + (TG)n Simple_repeat Simple_repeat 2 48 0 508 269 93 23 chr11 133557224 133557440 -15226032 - MIR SINE MIR 0 262 32 2302 124 13 0 chr11 133559395 133559702 -15223770 + AluSx SINE Alu 1 311 -1 2065 144 0 0 chr11 133560239 133560537 -15222935 - AluJb SINE Alu -11 301 4 311 225 17 150 chr11 133560913 133561086 -15222386 + MIR SINE MIR 46 195 -67 406 283 130 62 chr11 133561601 133561908 -15221564 - L2 LINE L2 0 3272 2945 202 349 53 61 chr11 133562448 133562580 -15220892 - MIR SINE MIR -60 148 18 479 239 82 13 chr11 133562609 133562793 -15220679 - MIR SINE MIR -56 206 12 30 69 0 0 chr11 133563363 133563421 -15220051 + AT_rich Low_complexity Low_complexity 1 58 0 323 147 15 15 chr11 133563571 133563639 -15219833 - L1MA5 LINE L1 -39 6261 6194 1725 176 0 0 chr11 133565095 133565367 -15218105 - AluJo SINE Alu -40 272 1 2313 88 7 13 chr11 133566027 133566332 -15217140 + AluSq SINE Alu 5 307 -6 410 276 0 7 chr11 133566919 133567198 -15216274 + (TG)n Simple_repeat Simple_repeat 1 276 0 182 165 0 78 chr11 133567210 133567313 -15216159 + (CGTG)n Simple_repeat Simple_repeat 2 96 0 593 185 92 0 chr11 133568417 133568590 -15214882 + L1MA8 LINE L1 6100 6288 -3 666 206 69 8 chr11 133571282 133571413 -15212059 - FRAM SINE Alu -30 146 8 2144 137 0 3 chr11 133572926 133573225 -15210247 - AluSx SINE Alu -14 298 1 505 272 33 33 chr11 133573564 133573748 -15209724 + MIR SINE MIR 77 260 -2 1828 139 0 50 chr11 133574529 133574639 -15208833 + AluJb SINE Alu 3 117 -195 2502 71 0 0 chr11 133574639 133574948 -15208524 - AluY SINE Alu -1 310 2 1828 139 0 50 chr11 133574948 133575139 -15208333 + AluJb SINE Alu 117 289 -23 2586 155 39 2 chr11 133577382 133577847 -15205625 - L1MB3 LINE L1 -1 6182 5701 2293 113 0 3 chr11 133578629 133578930 -15204542 + AluSx SINE Alu 2 301 -11 186 303 21 49 chr11 133579141 133579283 -15204189 - L2 LINE L2 -212 3060 2923 269 304 27 0 chr11 133579514 133579626 -15203846 - L1MB3 LINE L1 -2084 5724 5610 987 283 143 7 chr11 133579650 133580071 -15203401 + L2 LINE L2 2309 2786 -528 550 216 17 194 chr11 133580057 133580248 -15203224 + L2 LINE L2 2908 2985 -328 * 2255 110 0 0 chr11 133580248 133580548 -15202924 + AluSx SINE Alu 1 300 -12 550 216 17 194 chr11 133580548 133580778 -15202694 + L2 LINE L2 2985 3254 -59 426 231 70 0 chr11 133580794 133580976 -15202496 - L1MB3 LINE L1 -2208 5600 5366 1332 80 0 0 chr11 133580976 133581139 -15202333 - AluSg/x SINE Alu -15 294 132 1670 179 0 3 chr11 133581139 133581424 -15202048 - AluJo SINE Alu -3 309 26 281 234 27 36 chr11 133581450 133581464 -15202008 - L1MB3 LINE L1 -801 5345 5332 2003 120 0 0 chr11 133581464 133581723 -15201749 - AluSq SINE Alu -51 262 4 281 234 27 36 chr11 133581723 133581819 -15201653 - L1MB3 LINE L1 -814 5332 5236 1720 158 13 51 chr11 133583253 133583564 -15199908 - AluJo SINE Alu -12 300 2 255 324 37 42 chr11 133584297 133584513 -15198959 - L2 LINE L2 -223 3049 2835 2272 125 0 0 chr11 133586762 133587058 -15196414 + AluSx SINE Alu 1 296 -16 276 324 49 29 chr11 133587178 133587280 -15196192 + L2 LINE L2 3166 3269 -3 242 293 0 24 chr11 133587528 133587610 -15195862 + MER5A DNA MER1_type 3 82 -107 867 200 12 18 chr11 133588629 133588799 -15194673 + MER58A DNA MER1_type 37 205 -19 21 71 0 0 chr11 133589334 133589376 -15194096 + AT_rich Low_complexity Low_complexity 1 42 0 2381 209 38 16 chr11 133589379 133589643 -15193829 - L1MB7 LINE L1 -11 6173 5916 2715 91 6 3 chr11 133589643 133590004 -15193468 - THE1B LTR MaLR -2 362 1 2381 209 38 16 chr11 133590004 133590293 -15193179 - L1MB7 LINE L1 -268 5916 5608 571 62 0 0 chr11 133590293 133590374 -15193098 - Alu SINE Alu -1 308 228 1146 92 0 92 chr11 133590549 133590745 -15192727 - MSTB LTR MaLR -62 364 189 1010 135 0 35 chr11 133590745 133590915 -15192557 - AluSc SINE Alu -15 294 131 317 237 132 28 chr11 133591022 133591377 -15192095 - L1M4c LINE L1 -3968 2678 2287 5845 229 65 26 chr11 133591388 133592158 -15191314 - L1M4c LINE L1 -4458 2187 1448 305 80 0 20 chr11 133592158 133592208 -15191264 + (TTG)n Simple_repeat Simple_repeat 2 50 0 5845 229 65 26 chr11 133592208 133593125 -15190347 - L1M4c LINE L1 -5197 1448 28 186 71 0 0 chr11 133593696 133593724 -15189748 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2191 111 0 0 chr11 133593726 133594005 -15189467 - AluSc SINE Alu -29 280 2 332 260 143 30 chr11 133594139 133594343 -15189129 + L1MB5 LINE L1 5538 5653 -468 965 267 82 70 chr11 133594492 133594994 -15188478 - MLT1J LTR MaLR -2 509 2 232 246 87 0 chr11 133595248 133595317 -15188155 + MER104 DNA Tc2 61 135 -45 654 247 6 6 chr11 133598621 133598795 -15184677 - MER5B DNA MER1_type -2 176 3 724 285 83 30 chr11 133599382 133599856 -15183616 - L2 LINE L2 -32 3281 2769 2045 120 18 0 chr11 133599856 133600174 -15183298 - AluSx SINE Alu 0 327 5 724 285 83 30 chr11 133600174 133600240 -15183232 - L2 LINE L2 -544 2769 2708 934 280 34 46 chr11 133600343 133600757 -15182715 - L2 LINE L2 -597 2717 2309 404 189 23 68 chr11 133600852 133600984 -15182488 - L1MC4 LINE L1 -981 7061 6936 2219 113 0 3 chr11 133601003 133601295 -15182177 + AluSc SINE Alu 1 291 -18 2007 178 3 21 chr11 133601301 133601678 -15181794 - L1MB5 LINE L1 -8 6166 5797 22 0 0 0 chr11 133601681 133601703 -15181769 + AT_rich Low_complexity Low_complexity 1 22 0 2556 72 3 0 chr11 133603170 133603477 -15179995 - AluSc SINE Alu -1 308 1 834 19 0 39 chr11 133603645 133603748 -15179724 - AluY SINE Alu -17 294 196 1807 133 13 40 chr11 133604201 133604501 -15178971 + AluJb SINE Alu 1 292 -20 1926 151 12 12 chr11 133604501 133604832 -15178640 + L1MB5 LINE L1 5819 6149 -25 385 278 17 0 chr11 133607450 133607565 -15175907 + L2 LINE L2 3193 3309 -4 21 36 0 0 chr11 133607608 133607636 -15175836 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr11 133608954 133608986 -15174486 + AT_rich Low_complexity Low_complexity 1 32 0 310 214 125 101 chr11 133608990 133609158 -15174314 - L1MA10 LINE L1 0 6334 6163 22 35 0 0 chr11 133609158 133609187 -15174285 + AT_rich Low_complexity Low_complexity 1 29 0 335 222 160 49 chr11 133609190 133609226 -15174246 - L1MA10 LINE L1 0 6334 6299 2652 193 91 77 chr11 133609226 133610000 -15173472 - L1ME1 LINE L1 -27 6073 5280 1201 214 87 4 chr11 133610000 133610266 -15173206 + AluJb SINE Alu 1 288 -24 2652 193 91 77 chr11 133610266 133610367 -15173105 - L1ME1 LINE L1 -820 5280 5182 7040 231 70 84 chr11 133610367 133612419 -15171053 - L1ME1 LINE L1 -1174 4906 2826 1764 179 34 0 chr11 133612419 133612715 -15170757 + AluJb SINE Alu 1 306 -6 7040 231 70 84 chr11 133612715 133613460 -15170012 - L1ME1 LINE L1 -3254 2826 2072 2132 128 0 0 chr11 133613460 133613749 -15169723 - AluSx SINE Alu -23 289 1 7040 231 70 84 chr11 133613749 133613814 -15169658 - L1ME1 LINE L1 -4008 2072 2008 499 229 119 0 chr11 133613814 133613932 -15169540 - FLAM_A SINE Alu 0 133 2 7040 231 70 84 chr11 133613932 133615343 -15168129 - L1ME1 LINE L1 -4072 2008 720 2216 118 0 10 chr11 133615343 133615648 -15167824 + AluSx SINE Alu 1 302 -10 7040 231 70 84 chr11 133615648 133616316 -15167156 - L1ME1 LINE L1 -5360 720 44 2163 116 7 0 chr11 133616920 133617212 -15166260 - AluSx SINE Alu -14 298 5 206 61 0 30 chr11 133617380 133617413 -15166059 + (TAA)n Simple_repeat Simple_repeat 1 32 0 483 286 97 7 chr11 133617491 133617645 -15165827 - MIR3 SINE MIR -24 184 17 180 321 0 0 chr11 133619485 133619538 -15163934 - MIR3 SINE MIR -31 177 125 1230 150 129 54 chr11 133620660 133620940 -15162532 - AluJb SINE Alu -1 301 1 216 333 31 44 chr11 133621381 133621609 -15161863 - L2 LINE L2 -453 2861 2637 772 336 66 56 chr11 133621826 133622418 -15161054 - L3 LINE CR1 -44 1533 936 835 212 170 65 chr11 133622423 133622729 -15160743 - L1ME2 LINE L1 0 6164 5827 363 337 243 10 chr11 133622807 133622914 -15160558 - L3 LINE CR1 -697 880 799 2293 102 0 0 chr11 133622914 133623209 -15160263 - AluSg SINE Alu -15 295 1 363 337 243 10 chr11 133623209 133623608 -15159864 - L3 LINE CR1 -778 799 256 252 86 0 0 chr11 133624022 133624057 -15159415 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 1058 105 0 0 chr11 133624627 133624760 -15158712 + AluSq/x SINE Alu 1 133 -180 1757 160 3 29 chr11 133625433 133625739 -15157733 - AluJo SINE Alu -14 298 1 2085 227 134 82 chr11 133626169 133627042 -15156430 - L1MC4 LINE L1 0 8042 7216 215 31 31 0 chr11 133627042 133627074 -15156398 + (TTATA)n Simple_repeat Simple_repeat 4 36 0 2085 227 134 82 chr11 133627074 133627125 -15156347 - L1MC4 LINE L1 -826 7216 7169 2379 77 0 46 chr11 133627125 133627450 -15156022 + AluY SINE Alu 1 310 -1 2085 227 134 82 chr11 133627450 133627725 -15155747 - L1MC4 LINE L1 -873 7169 6779 1202 101 0 13 chr11 133629108 133629267 -15154205 - AluSc SINE Alu -152 157 1 357 303 0 66 chr11 133630518 133630670 -15152802 - MIR SINE MIR -70 192 51 365 347 64 64 chr11 133630817 133631150 -15152322 + L2 LINE L2 2864 3199 -73 2081 123 0 0 chr11 133631150 133631442 -15152030 - AluJo SINE Alu -7 305 14 365 347 64 64 chr11 133631442 133631514 -15151958 + L2 LINE L2 3198 3269 -3 188 241 19 0 chr11 133633465 133633519 -15149953 + L3b LINE CR1 1343 1397 -186 1678 174 36 24 chr11 133633582 133633916 -15149556 - L1MB5 LINE L1 -6 6168 5831 2315 92 0 3 chr11 133634103 133634397 -15149075 - AluSg SINE Alu -17 293 1 1930 57 0 0 chr11 133635588 133635817 -15147655 - AluY SINE Alu 0 311 83 2179 120 0 0 chr11 133636999 133637291 -15146181 - AluSx SINE Alu -20 292 1 409 256 102 6 chr11 133637746 133637922 -15145550 - MLT1J1 LTR MaLR -248 198 6 1741 160 0 45 chr11 133639246 133639559 -15143913 - AluJb SINE Alu -13 299 1 919 292 46 20 chr11 133639568 133640019 -15143453 - Charlie8 DNA MER1_type -1039 1378 1 964 180 12 0 chr11 133640569 133640741 -15142731 + FRAM SINE Alu 1 174 -2 216 282 16 58 chr11 133640886 133641045 -15142427 - MIR SINE MIR -68 194 46 405 189 211 11 chr11 133641078 133641173 -15142299 - MER81 DNA DNA 0 114 1 1990 86 4 22 chr11 133641283 133641550 -15141922 + AluSp SINE Alu 40 301 -12 2287 119 0 6 chr11 133642181 133642492 -15140980 + AluSx SINE Alu 1 309 -3 383 255 0 11 chr11 133642630 133642724 -15140748 + MIR SINE MIR 22 114 -148 285 258 56 0 chr11 133642780 133642869 -15140603 + MER5A DNA MER1_type 16 109 -80 1589 157 32 73 chr11 133643545 133643858 -15139614 + AluJb SINE Alu 1 300 -12 211 348 163 22 chr11 133643892 133644070 -15139402 + L3b LINE CR1 1198 1400 -183 268 290 81 40 chr11 133644267 133644391 -15139081 + MIR3 SINE MIR 15 143 -65 207 257 27 27 chr11 133644405 133644479 -15138993 + (TTCA)n Simple_repeat Simple_repeat 4 77 0 235 220 0 0 chr11 133644485 133644535 -15138937 - L2 LINE L2 0 3313 3264 228 175 0 0 chr11 133644674 133644714 -15138758 - MIR3 SINE MIR -3 205 166 2616 67 0 3 chr11 133645306 133645618 -15137854 - AluY SINE Alu 0 311 1 2189 185 66 21 chr11 133645618 133646045 -15137427 - L1M4 LINE L1 -563 6113 5624 1931 160 3 7 chr11 133646045 133646352 -15137120 - AluJb SINE Alu -6 306 1 2189 185 66 21 chr11 133646352 133646676 -15136796 - L1M4 LINE L1 -1052 5624 5316 1044 192 66 0 chr11 133646677 133646875 -15136597 - AluJo SINE Alu -14 298 88 4375 188 31 49 chr11 133646885 133647314 -15136158 - L1M4 LINE L1 -1312 5332 4897 2413 79 0 0 chr11 133647314 133647605 -15135867 + AluSg SINE Alu 1 291 -19 4375 188 31 49 chr11 133647605 133648286 -15135186 - L1M4 LINE L1 -1747 4897 4241 3619 226 70 35 chr11 133648291 133649470 -15134002 - L1M4 LINE L1 -2633 4011 2765 2193 91 61 55 chr11 133649470 133649832 -15133640 - THE1B LTR MaLR 0 364 1 3619 226 70 35 chr11 133649832 133650328 -15133144 - L1M4 LINE L1 -3879 2765 2287 5845 229 65 26 chr11 133650339 133651109 -15132363 - L1M4 LINE L1 -4458 2187 1448 305 80 0 20 chr11 133651109 133651159 -15132313 + (TTG)n Simple_repeat Simple_repeat 2 50 0 5845 229 65 26 chr11 133651159 133652076 -15131396 - L1M4 LINE L1 -5197 1448 28 186 71 0 0 chr11 133652647 133652675 -15130797 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2191 111 0 0 chr11 133652677 133652956 -15130516 - AluSc SINE Alu -29 280 2 332 260 143 30 chr11 133653090 133653294 -15130178 + L1MB5 LINE L1 5538 5653 -468 965 267 82 70 chr11 133653443 133653945 -15129527 - MLT1J LTR MaLR -2 509 2 232 246 87 0 chr11 133654199 133654268 -15129204 + MER104 DNA Tc2 61 135 -45 654 247 6 6 chr11 133657571 133657745 -15125727 - MER5B DNA MER1_type -2 176 3 724 285 83 30 chr11 133658332 133658806 -15124666 - L2 LINE L2 -32 3281 2769 2045 120 18 0 chr11 133658806 133659124 -15124348 - AluSx SINE Alu 0 327 5 724 285 83 30 chr11 133659124 133659190 -15124282 - L2 LINE L2 -544 2769 2708 934 280 34 46 chr11 133659293 133659707 -15123765 - L2 LINE L2 -597 2717 2309 404 189 23 68 chr11 133659802 133659934 -15123538 - L1MC4 LINE L1 -981 7061 6936 2219 113 0 3 chr11 133659953 133660245 -15123227 + AluSc SINE Alu 1 291 -18 2007 178 3 21 chr11 133660251 133660628 -15122844 - L1MB5 LINE L1 -8 6166 5797 22 0 0 0 chr11 133660631 133660653 -15122819 + AT_rich Low_complexity Low_complexity 1 22 0 2546 78 0 0 chr11 133662120 133662427 -15121045 - AluSc SINE Alu -2 307 1 834 19 0 39 chr11 133662594 133662697 -15120775 - AluY SINE Alu -17 294 196 1836 130 13 40 chr11 133663150 133663450 -15120022 + AluJb SINE Alu 1 292 -20 1926 151 12 12 chr11 133663450 133663781 -15119691 + L1MB5 LINE L1 5819 6149 -25 385 278 17 0 chr11 133666399 133666514 -15116958 + L2 LINE L2 3193 3309 -4 21 36 0 0 chr11 133666557 133666585 -15116887 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr11 133667904 133667936 -15115536 + AT_rich Low_complexity Low_complexity 1 32 0 310 214 125 101 chr11 133667940 133668108 -15115364 - L1MA10 LINE L1 0 6334 6163 22 35 0 0 chr11 133668108 133668137 -15115335 + AT_rich Low_complexity Low_complexity 1 29 0 335 222 160 49 chr11 133668140 133668176 -15115296 - L1MA10 LINE L1 0 6334 6299 2652 193 91 77 chr11 133668176 133668950 -15114522 - L1ME1 LINE L1 -27 6073 5280 1201 214 87 4 chr11 133668950 133669216 -15114256 + AluJb SINE Alu 1 288 -24 2652 193 91 77 chr11 133669216 133669317 -15114155 - L1ME1 LINE L1 -820 5280 5182 6160 229 70 84 chr11 133669317 133671369 -15112103 - L1ME1 LINE L1 -1174 4906 2825 1764 179 34 0 chr11 133671369 133671665 -15111807 + AluJb SINE Alu 1 306 -6 6160 229 70 84 chr11 133671665 133672410 -15111062 - L1ME1 LINE L1 -3255 2825 2070 2109 128 0 0 chr11 133672410 133672699 -15110773 - AluSx SINE Alu -23 289 1 6160 229 70 84 chr11 133672699 133672764 -15110708 - L1ME1 LINE L1 -4010 2070 2006 540 229 119 0 chr11 133672764 133672882 -15110590 - FLAM_A SINE Alu 0 133 2 6160 229 70 84 chr11 133672882 133674293 -15109179 - L1ME1 LINE L1 -4074 2006 720 2201 118 0 10 chr11 133674293 133674598 -15108874 + AluSx SINE Alu 1 302 -10 6160 229 70 84 chr11 133674598 133675266 -15108206 - L1ME1 LINE L1 -5360 720 44 2143 117 7 0 chr11 133675870 133676161 -15107311 - AluSx SINE Alu -15 297 5 206 61 0 30 chr11 133676329 133676362 -15107110 + (TAA)n Simple_repeat Simple_repeat 1 32 0 535 286 97 7 chr11 133676440 133676594 -15106878 - MIR3 SINE MIR -24 184 17 194 321 0 0 chr11 133678434 133678487 -15104985 - MIR3 SINE MIR -31 177 125 1351 143 129 54 chr11 133679609 133679889 -15103583 - AluJb SINE Alu -1 301 1 272 333 31 44 chr11 133680330 133680558 -15102914 - L2 LINE L2 -453 2861 2637 185 320 47 41 chr11 133680596 133680768 -15102704 - L2 LINE L2 -860 2454 2282 919 336 66 56 chr11 133680775 133681367 -15102105 - L3 LINE CR1 -44 1533 936 774 226 170 65 chr11 133681372 133681678 -15101794 - L1ME2 LINE L1 0 6164 5827 486 337 243 10 chr11 133681756 133681863 -15101609 - L3 LINE CR1 -697 880 799 2270 102 0 0 chr11 133681863 133682158 -15101314 - AluSg SINE Alu -15 295 1 486 337 243 10 chr11 133682158 133682557 -15100915 - L3 LINE CR1 -778 799 256 252 86 0 0 chr11 133682971 133683006 -15100466 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 1049 105 0 0 chr11 133683576 133683709 -15099763 + AluSq/x SINE Alu 1 133 -180 1741 160 3 29 chr11 133684383 133684689 -15098783 - AluJo SINE Alu -14 298 1 2148 227 134 82 chr11 133685119 133685992 -15097480 - L1MC4 LINE L1 0 8042 7216 215 31 31 0 chr11 133685992 133686024 -15097448 + (TTATA)n Simple_repeat Simple_repeat 4 36 0 2148 227 134 82 chr11 133686024 133686075 -15097397 - L1MC4 LINE L1 -826 7216 7169 2444 74 0 43 chr11 133686075 133686399 -15097073 + AluY SINE Alu 1 310 -1 2148 227 134 82 chr11 133686399 133686674 -15096798 - L1MC4 LINE L1 -873 7169 6779 260 229 0 0 chr11 133688722 133688770 -15094702 - L2 LINE L2 -12 3301 3254 568 176 91 125 chr11 133689809 133689985 -15093487 - MER58A DNA MER1_type -28 196 27 358 270 197 7 chr11 133690000 133690152 -15093320 - MER5A DNA MER1_type 0 189 9 225 0 0 0 chr11 133690598 133690623 -15092849 + (A)n Simple_repeat Simple_repeat 1 25 0 1744 156 42 0 chr11 133693292 133693581 -15089891 - AluJo SINE Alu -11 301 1 574 266 13 25 chr11 133693879 133694037 -15089435 + MIR SINE MIR 13 168 -94 556 329 152 20 chr11 133694146 133694541 -15088931 + L3 LINE CR1 1130 1576 -1 339 305 0 51 chr11 133694833 133694951 -15088521 - L3 LINE CR1 -11 1566 1455 1465 156 21 126 chr11 133695843 133696176 -15087296 + AluJo SINE Alu 1 298 -4 1687 199 39 34 chr11 133696449 133696830 -15086642 + MLT1B LTR MaLR 8 390 0 475 301 32 13 chr11 133697023 133697179 -15086293 - MIR3 SINE MIR -43 165 7 273 259 59 12 chr11 133697587 133697672 -15085800 + MIR3 SINE MIR 72 160 -48 22 56 0 0 chr11 133698174 133698210 -15085262 + AT_rich Low_complexity Low_complexity 1 36 0 1509 230 75 22 chr11 133698266 133698666 -15084806 - L1ME1 LINE L1 -50 6116 5696 316 301 78 113 chr11 133698775 133699110 -15084362 + L2 LINE L2 2945 3267 -5 391 326 22 0 chr11 133699309 133699447 -15084025 - MIR SINE MIR -3 259 119 1809 166 3 0 chr11 133699646 133699930 -15083542 + AluJb SINE Alu 1 285 -27 237 350 42 0 chr11 133700576 133700696 -15082776 - MIR3 SINE MIR -7 201 77 2001 102 0 98 chr11 133700979 133701314 -15082158 + AluSx SINE Alu 1 302 -10 186 0 88 0 chr11 133703009 133703043 -15080429 + (TATAA)n Simple_repeat Simple_repeat 5 41 0 245 329 42 51 chr11 133703055 133703271 -15080201 - L2 LINE L2 -231 3041 2828 218 328 97 30 chr11 133703411 133703545 -15079927 - L2 LINE L2 -675 2639 2497 1770 150 3 14 chr11 133703709 133703996 -15079476 - L1PA15 LINE L1 -315 5850 5567 401 232 219 26 chr11 133704447 133704598 -15078874 + MER5A DNA MER1_type 10 189 0 297 0 0 0 chr11 133705025 133705058 -15078414 + (A)n Simple_repeat Simple_repeat 1 33 0 388 209 15 134 chr11 133705655 133705789 -15077683 + MER112 DNA MER1_type 6 123 -137 2274 120 0 0 chr11 133706171 133706479 -15076993 - AluSx SINE Alu -4 308 1 242 188 43 43 chr11 133706583 133706652 -15076820 - MIR3 SINE MIR -3 205 137 843 242 95 64 chr11 133706787 133706837 -15076635 - MER113 DNA MER1_type? -52 469 422 1940 156 0 13 chr11 133706837 133707139 -15076333 - AluJb SINE Alu -14 298 1 843 242 95 64 chr11 133707139 133707539 -15075933 - MER113 DNA MER1_type? -99 422 5 405 275 67 29 chr11 133708726 133708898 -15074574 - MIR SINE MIR -52 210 37 219 292 15 0 chr11 133710596 133710675 -15072797 + MIR SINE MIR 61 141 -67 992 173 16 5 chr11 133710707 133710892 -15072580 + MIR SINE MIR 2 188 -74 236 184 20 0 chr11 133711323 133711372 -15072100 - MIR SINE MIR -124 138 89 220 78 0 109 chr11 133713164 133713228 -15070244 + (TTTTA)n Simple_repeat Simple_repeat 4 60 0 272 174 0 0 chr11 133713234 133713280 -15070192 - MADE1 DNA Mariner -34 46 1 180 0 0 0 chr11 133713355 133713375 -15070097 + (CAT)n Simple_repeat Simple_repeat 2 21 0 281 321 102 3 chr11 133713608 133713742 -15069730 + MIR SINE MIR 6 147 -62 340 319 122 4 chr11 133713790 133714028 -15069444 - L2 LINE L2 -50 3263 2998 309 282 189 10 chr11 133715874 133716080 -15067392 - L1ME LINE L1 -301 5820 5578 323 293 98 15 chr11 133717744 133717877 -15065595 + L2 LINE L2 3168 3311 -2 243 280 20 60 chr11 133718389 133718489 -15064983 - MIR SINE MIR -79 183 88 1006 179 0 0 chr11 133719151 133719319 -15064153 + AluJb SINE Alu 133 300 -12 2933 183 14 6 chr11 133719952 133720470 -15063002 + Tigger7 DNA MER2_type 1 522 -1965 305 244 70 12 chr11 133720469 133720555 -15062917 + Tigger7 DNA MER2_type 2396 2486 -1 * 474 316 75 26 chr11 133720586 133720814 -15062658 - MIR SINE MIR -1 261 23 2030 142 3 6 chr11 133720995 133721306 -15062166 - AluSx SINE Alu -2 310 1 263 307 29 58 chr11 133721311 133721552 -15061920 - MARNA DNA Mariner -38 548 315 1590 164 32 18 chr11 133722166 133722482 -15060990 - AluJb SINE Alu 0 320 1 373 238 0 0 chr11 133723888 133723968 -15059504 - HAL1 LINE L1 -945 1562 1483 758 192 0 0 chr11 133723988 133724113 -15059359 - FLAM_A SINE Alu -8 125 1 23 0 0 0 chr11 133725499 133725522 -15057950 + AT_rich Low_complexity Low_complexity 1 23 0 1389 151 93 19 chr11 133725533 133725791 -15057681 - AluJo SINE Alu -30 282 6 229 211 0 0 chr11 133726223 133726275 -15057197 + (TA)n Simple_repeat Simple_repeat 2 53 0 7824 88 6 18 chr11 133726560 133727645 -15055827 + MER11C LTR ERVK 1 1071 0 23 33 0 0 chr11 133728066 133728096 -15055376 + AT_rich Low_complexity Low_complexity 1 30 0 315 299 163 0 chr11 133728603 133728750 -15054722 - L2 LINE L2 0 3272 3102 2287 103 0 3 chr11 133730939 133731240 -15052232 + AluSx SINE Alu 1 300 -12 229 234 125 70 chr11 133731278 133731406 -15052066 - MIR SINE MIR -109 153 19 430 335 0 30 chr11 133732693 133732860 -15050612 - MIR3 SINE MIR -31 177 16 1109 176 53 154 chr11 133733748 133734124 -15049348 - MLT1A2 LTR MaLR -6 368 31 423 134 45 0 chr11 133734159 133734226 -15049246 + MLT1A1 LTR MaLR 270 339 -26 230 192 0 77 chr11 133735263 133735341 -15048131 - MER5C DNA MER1_type -252 72 1 212 258 16 16 chr11 133735749 133735811 -15047661 - L3 LINE CR1 -73 1504 1443 21 57 0 0 chr11 133737299 133737334 -15046138 + AT_rich Low_complexity Low_complexity 1 35 0 641 266 45 55 chr11 133737737 133738155 -15045317 - L1MEd LINE L1 -4862 1257 844 1140 221 3 45 chr11 133738214 133738526 -15044946 - AluJb SINE Alu -3 299 1 2013 125 17 3 chr11 133738540 133738829 -15044643 - AluSx SINE Alu -14 298 6 232 264 142 0 chr11 133740722 133740828 -15042644 + MIR SINE MIR 74 194 -68 1974 153 0 7 chr11 133742213 133742514 -15040958 - AluJb SINE Alu -13 299 1 2053 135 3 0 chr11 133742825 133743114 -15040358 + AluJo SINE Alu 4 293 -19 342 0 0 0 chr11 133743121 133743159 -15040313 + (CA)n Simple_repeat Simple_repeat 2 39 0 742 245 77 120 chr11 133743235 133743835 -15039637 - L1MC4a LINE L1 -1760 6048 5475 763 217 23 6 chr11 133744394 133744569 -15038903 - MER5B DNA MER1_type 0 178 1 794 276 10 0 chr11 133744578 133744770 -15038702 + MER58A DNA MER1_type 1 194 -30 825 225 11 42 chr11 133744785 133744976 -15038496 - MLT2D LTR ERVL -4 410 226 * 897 216 66 33 chr11 133744935 133745227 -15038245 - MLT1B LTR MaLR -83 291 1 425 323 45 9 chr11 133745303 133745526 -15037946 + MIR SINE MIR 32 262 0 213 310 62 44 chr11 133746189 133746269 -15037203 + L2 LINE L2 3199 3283 -30 1969 183 18 25 chr11 133746269 133746662 -15036810 - MLT1B LTR MaLR 0 390 1 213 310 62 44 chr11 133746662 133746694 -15036778 + L2 LINE L2 3283 3313 0 538 170 10 0 chr11 133748028 133748128 -15035344 + MER5A DNA MER1_type 9 109 -80 876 260 68 37 chr11 133750914 133751268 -15032204 - HAL1 LINE L1 -452 2055 1691 4256 263 101 31 chr11 133751330 133753107 -15030365 - HAL1 LINE L1 -606 1901 1 23 54 0 0 chr11 133753195 133753232 -15030240 + AT_rich Low_complexity Low_complexity 1 37 0 201 321 12 24 chr11 133754605 133754689 -15028783 + MER5A DNA MER1_type 39 121 -68 2048 126 7 13 chr11 133755059 133755368 -15028104 - AluSx SINE Alu -3 309 3 180 111 0 0 chr11 133756634 133756661 -15026811 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2367 88 16 0 chr11 133756873 133757179 -15026293 + AluSp SINE Alu 1 311 -2 301 282 24 0 chr11 133757599 133757684 -15025788 + L3 LINE CR1 626 712 -865 196 310 86 17 chr11 133757757 133757873 -15025599 - MIR SINE MIR -31 231 108 210 300 12 12 chr11 133757940 133758020 -15025452 + L3 LINE CR1 773 852 -725 289 344 221 9 chr11 133758160 133758500 -15024972 - L3 LINE CR1 -979 598 187 5324 54 6 10 chr11 133758508 133759197 -15024275 - L1PA2 LINE L1 -2 6153 5468 871 146 23 0 chr11 133759199 133759329 -15024143 - FLAM_A SINE Alu 0 133 1 354 378 7 0 chr11 133759564 133759707 -15023765 + L2 LINE L2 3162 3305 -8 1494 203 54 46 chr11 133760209 133760578 -15022894 - MER87 LTR ERV1 -169 372 1 881 237 90 4 chr11 133760582 133760827 -15022645 - MLT1E2 LTR MaLR -338 288 23 295 315 155 14 chr11 133761393 133761606 -15021866 - MIR SINE MIR 0 262 20 252 0 0 0 chr11 133761954 133761982 -15021490 + (GGCTG)n Simple_repeat Simple_repeat 4 31 0 918 143 0 0 chr11 133762550 133762683 -15020789 - AluSq/x SINE Alu -179 133 1 1595 182 14 17 chr11 133763538 133763835 -15019637 - AluJb SINE Alu -16 296 1 283 289 44 0 chr11 133763994 133764084 -15019388 + MARNA DNA Mariner 478 571 -15 498 250 50 0 chr11 133766344 133766464 -15017008 - MIR SINE MIR -129 133 8 222 262 33 0 chr11 133766550 133766611 -15016861 + L2 LINE L2 3202 3264 -49 307 313 62 19 chr11 133767380 133767540 -15015932 - MIR SINE MIR -3 259 93 275 294 83 9 chr11 133768161 133768270 -15015202 - MIR SINE MIR -142 120 4 2435 100 3 0 chr11 133769471 133769782 -15013690 + AluSx SINE Alu 1 312 0 204 321 0 0 chr11 133770831 133770887 -15012585 + L2 LINE L2 3217 3272 0 383 326 163 5 chr11 133771216 133771412 -15012060 - MIR SINE MIR -17 245 19 508 329 48 26 chr11 133771482 133771710 -15011762 - MIR SINE MIR -13 249 17 231 312 75 0 chr11 133771755 133771848 -15011624 - L1ME4a LINE L1 -2 6119 6020 805 268 154 3 chr11 133771929 133772254 -15011218 - L1ME4a LINE L1 -216 5905 5532 396 355 66 13 chr11 133773393 133773621 -15009851 - MIR SINE MIR -3 259 20 5340 106 17 22 chr11 133774347 133775130 -15008342 - MER4E LTR ERV1 0 779 1 564 264 117 60 chr11 133775428 133775830 -15007642 - MLT1J LTR MaLR -2 509 85 234 219 94 16 chr11 133775837 133775901 -15007571 - MLT1L LTR MaLR -542 73 5 204 285 47 104 chr11 133776079 133776272 -15007200 + L2 LINE L2 3127 3308 -5 738 276 55 41 chr11 133776773 133777117 -15006355 + L1MC4a LINE L1 5627 5975 -1833 347 281 70 47 chr11 133777128 133777299 -15006173 + HAL1b LINE L1 1174 1348 0 832 239 41 18 chr11 133777800 133778018 -15005454 + MER58A DNA MER1_type 1 223 -1 242 373 51 0 chr11 133779608 133779726 -15003746 - MIR SINE MIR -20 242 119 301 282 170 19 chr11 133780937 133781149 -15002323 + L1ME LINE L1 5539 5781 -340 2251 116 19 35 chr11 133781459 133781829 -15001643 - THE1B LTR MaLR 0 364 1 332 267 44 0 chr11 133783153 133783243 -15000229 + MER103 DNA DNA 23 116 -50 1934 128 8 67 chr11 133785852 133786210 -14997262 - MER1B DNA MER1_type 0 337 1 195 139 0 0 chr11 133787293 133787329 -14996143 + (A)n Simple_repeat Simple_repeat 1 36 0 23 54 0 0 chr11 133788810 133788847 -14994625 + AT_rich Low_complexity Low_complexity 1 37 0 204 328 86 17 chr11 133791903 133792019 -14991453 - MIR SINE MIR -67 141 18 183 143 114 0 chr11 133792428 133792463 -14991009 + L2 LINE L2 3274 3312 -1 44 46 0 0 chr11 133793197 133793262 -14990210 + AT_rich Low_complexity Low_complexity 1 65 0 201 321 69 48 chr11 133793262 133793459 -14990013 - MIR SINE MIR -58 204 6 491 269 27 13 chr11 133794434 133794583 -14988889 + MARNA DNA Mariner 315 465 -121 1060 240 47 4 chr11 133794602 133794835 -14988637 - MIR SINE MIR -16 246 4 3655 49 0 7 chr11 133794966 133795417 -14988055 - LTR7 LTR ERV1 -2 448 1 2603 77 48 13 chr11 133795417 133795796 -14987676 - HERVH LTR ERV1 0 7713 7322 1388 139 19 0 chr11 133795794 133796010 -14987462 - HERVH LTR ERV1 -1894 5819 5600 * 8275 116 3 6 chr11 133796011 133797738 -14985734 - HERVH LTR ERV1 -1858 5233 3492 993 127 7 0 chr11 133797728 133797878 -14985594 - HERVH LTR ERV1 -4423 3290 3140 * 16473 98 22 21 chr11 133797857 133800723 -14982749 - HERVH LTR ERV1 -4718 2995 1 3468 71 0 7 chr11 133800725 133801176 -14982296 - LTR7 LTR ERV1 -2 448 1 259 215 141 33 chr11 133801181 133801302 -14982170 - L1ME4a LINE L1 -28 6093 5960 804 115 0 15 chr11 133802158 133802288 -14981184 + AluY SINE Alu 184 311 0 415 318 19 0 chr11 133802545 133802652 -14980820 - L2 LINE L2 -3 3269 3161 1381 153 5 0 chr11 133803702 133803918 -14979554 + AluSx SINE Alu 1 217 -95 23 0 0 0 chr11 133803933 133803956 -14979516 + AT_rich Low_complexity Low_complexity 1 23 0 1501 229 95 22 chr11 133804570 133805010 -14978462 - MLT2B1 LTR ERVL -29 445 1 194 222 302 0 chr11 133805511 133805574 -14977898 + L2 LINE L2 3230 3311 -2 1230 177 131 27 chr11 133805591 133805876 -14977596 - AluJb SINE Alu 0 302 1 681 251 125 86 chr11 133805902 133806391 -14977081 - MLT1J LTR MaLR -3 508 1 296 320 72 36 chr11 133806516 133806698 -14976774 + MIR SINE MIR 22 215 -47 2023 99 41 3 chr11 133806698 133806992 -14976480 - AluSx SINE Alu -7 305 1 296 320 72 36 chr11 133806992 133807031 -14976441 + MIR SINE MIR 215 251 -11 342 337 46 5 chr11 133807319 133807515 -14975957 - L2 LINE L2 -824 2490 2287 625 242 32 32 chr11 133807516 133807702 -14975770 - L2 LINE L2 -1 3312 3127 502 277 107 0 chr11 133808138 133808315 -14975157 + MIR SINE MIR 2 197 -65 2036 175 23 0 chr11 133808928 133809277 -14974195 - MLT1A1 LTR MaLR -8 357 1 242 332 106 44 chr11 133809548 133809822 -14973650 - L2 LINE L2 -18 3254 2964 185 179 26 0 chr11 133810066 133810105 -14973367 - MIR3 SINE MIR -51 157 118 211 200 0 0 chr11 133812601 133812641 -14970831 + L2 LINE L2 3222 3261 -11 195 42 0 0 chr11 133814016 133814040 -14969432 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 301 282 34 51 chr11 133815476 133815593 -14967879 - MER5B DNA MER1_type -60 118 4 214 235 88 98 chr11 133815593 133815683 -14967789 - MIR3 SINE MIR -37 171 83 2179 140 12 3 chr11 133815862 133815939 -14967533 - MER2 DNA MER2_type 0 345 270 300 53 0 0 chr11 133815939 133815977 -14967495 + (TA)n Simple_repeat Simple_repeat 2 39 0 2179 140 12 3 chr11 133815977 133816235 -14967237 - MER2 DNA MER2_type -75 270 7 589 191 26 26 chr11 133816847 133816962 -14966510 + MIR3 SINE MIR 82 196 -12 589 252 207 32 chr11 133817353 133817730 -14965742 + L1MC4 LINE L1 7600 8042 0 1999 93 22 56 chr11 133818522 133818845 -14964627 - AluSx SINE Alu 0 312 1 411 368 36 0 chr11 133819162 133819328 -14964144 + L2 LINE L2 3101 3272 0 244 286 0 0 chr11 133821551 133821607 -14961865 + L2 LINE L2 3215 3270 -2 191 283 111 30 chr11 133821629 133821728 -14961744 - L2 LINE L2 -8 3305 3199 1077 275 109 27 chr11 133822005 133822453 -14961019 - L2 LINE L2 -863 2451 1967 206 377 0 58 chr11 133822487 133822641 -14960831 + L2 LINE L2 3127 3271 -1 381 93 0 0 chr11 133822649 133822703 -14960769 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 242 224 271 0 chr11 133824134 133824219 -14959253 - MIR SINE MIR -67 141 34 2056 122 27 7 chr11 133824909 133825203 -14958269 + AluSx SINE Alu 1 300 -12 461 261 55 24 chr11 133825301 133825466 -14958006 - MLT1I LTR MaLR -6 403 234 452 235 181 69 chr11 133825847 133826051 -14957421 - MIR SINE MIR -17 245 19 201 291 68 34 chr11 133826052 133826169 -14957303 - L2 LINE L2 -484 2830 2710 207 69 0 0 chr11 133827667 133827696 -14955776 + (T)n Simple_repeat Simple_repeat 1 29 0 188 211 18 88 chr11 133828573 133828630 -14954842 - MER5A DNA MER1_type -60 129 77 289 238 48 12 chr11 133831554 133831638 -14951834 + MIR SINE MIR 173 259 -3 603 327 96 28 chr11 133831718 133832281 -14951191 + L2 LINE L2 2013 2613 -701 473 363 93 49 chr11 133832400 133832786 -14950686 + L2 LINE L2 2870 3272 0 299 255 160 0 chr11 133832794 133832888 -14950584 - L3 LINE CR1 -858 719 611 2293 223 23 62 chr11 133832939 133833597 -14949875 - L1ME2 LINE L1 -9 6224 5593 332 232 286 0 chr11 133833825 133833937 -14949535 - L1ME2 LINE L1 -639 5596 5453 198 0 0 0 chr11 133833963 133833985 -14949487 + (TA)n Simple_repeat Simple_repeat 1 22 0 4763 232 43 65 chr11 133834013 133834688 -14948784 - L1ME2 LINE L1 -922 5293 4605 2073 120 0 28 chr11 133834688 133835009 -14948463 + AluSx SINE Alu 1 313 0 4763 232 43 65 chr11 133835009 133836127 -14947345 - L1ME2 LINE L1 -1610 4605 3538 3218 283 63 41 chr11 133836137 133837873 -14945599 - L1ME2 LINE L1 -4573 1823 49 365 349 88 5 chr11 133837994 133838186 -14945286 - L3 LINE CR1 -1171 406 199 489 323 7 90 chr11 133838233 133838512 -14944960 - MIR SINE MIR -4 258 3 1662 102 4 4 chr11 133838652 133838877 -14944595 - AluSg/x SINE Alu -6 304 80 220 274 0 113 chr11 133839361 133839467 -14944005 - L2 LINE L2 -264 3008 2915 1594 154 99 7 chr11 133840091 133840364 -14943108 + AluSx SINE Alu 1 298 -14 223 277 36 48 chr11 133840826 133840909 -14942563 - L2 LINE L2 -19 3294 3213 1235 194 11 11 chr11 133841030 133841303 -14942169 - Charlie5 DNA MER1_type 0 2624 2352 523 209 307 0 chr11 133841301 133841454 -14942018 - Charlie5 DNA MER1_type -2412 200 1 * 434 232 37 18 chr11 133841577 133841717 -14941755 + MIR SINE MIR 115 256 -6 228 253 13 27 chr11 133842387 133842462 -14941010 - MIR SINE MIR -98 164 91 6279 117 7 9 chr11 133843637 133843966 -14939506 - L1PA16 LINE L1 -9 6157 5829 2141 127 3 3 chr11 133843966 133844274 -14939198 - AluSq SINE Alu -5 308 1 6279 117 7 9 chr11 133844274 133845400 -14938072 - L1PA16 LINE L1 -337 5829 4705 721 162 77 63 chr11 133846196 133846489 -14936983 + MER33 DNA MER1_type 1 363 0 2151 134 0 0 chr11 133848043 133848341 -14935131 - AluSx SINE Alu -14 298 1 390 285 75 63 chr11 133848349 133848696 -14934776 - L1ME LINE L1 -297 5824 5474 2072 129 0 3 chr11 133848802 133849123 -14934349 - AluSx SINE Alu 0 320 1 1431 151 65 127 chr11 133849124 133849573 -14933899 - Charlie4a DNA MER1_type -71 437 17 286 257 211 40 chr11 133849611 133849763 -14933709 - MIR3 SINE MIR -14 194 17 950 263 14 0 chr11 133849855 133850072 -14933400 + MER58A DNA MER1_type 5 224 0 362 237 130 68 chr11 133850327 133850395 -14933077 + L2 LINE L2 3126 3188 -125 2572 65 0 0 chr11 133850395 133850701 -14932771 + AluY SINE Alu 1 306 -5 362 237 130 68 chr11 133850701 133850809 -14932663 + L2 LINE L2 3188 3313 0 227 395 44 0 chr11 133850968 133851082 -14932390 + L2 LINE L2 3195 3313 0 1844 160 14 0 chr11 133851221 133851508 -14931964 + AluJb SINE Alu 1 291 -21 1157 129 0 12 chr11 133851508 133851679 -14931793 - L1MA5A LINE L1 -12 6285 6117 216 0 0 0 chr11 133851679 133851703 -14931769 + (TA)n Simple_repeat Simple_repeat 2 25 0 234 0 0 0 chr11 133851703 133851729 -14931743 + (T)n Simple_repeat Simple_repeat 1 26 0 1236 51 0 0 chr11 133851729 133851867 -14931605 - AluSq/x SINE Alu -175 138 1 247 130 109 0 chr11 133851868 133851914 -14931558 - L1MA5A LINE L1 -183 6114 6064 2263 113 0 0 chr11 133852959 133853261 -14930211 - AluSx SINE Alu -10 302 1 2233 94 13 13 chr11 133853276 133853584 -14929888 - AluY SINE Alu -3 308 1 312 27 0 0 chr11 133854928 133854965 -14928507 + (TG)n Simple_repeat Simple_repeat 1 37 0 885 262 16 48 chr11 133855497 133855745 -14927727 + MIR SINE MIR 2 241 -21 317 312 282 6 chr11 133855843 133856013 -14927459 - MIR SINE MIR -2 260 44 2066 100 50 0 chr11 133856016 133856297 -14927175 + AluSx SINE Alu 14 308 -4 294 357 31 0 chr11 133856588 133856717 -14926755 + MIR SINE MIR 107 239 -23 306 292 108 0 chr11 133858037 133858157 -14925315 - MIR SINE MIR -12 250 118 453 282 139 5 chr11 133858345 133858552 -14924920 + MIR SINE MIR 19 252 -10 283 313 47 76 chr11 133858629 133858840 -14924632 + L2 LINE L2 2554 2758 -556 229 326 55 44 chr11 133859036 133859272 -14924200 + L2 LINE L2 2916 3199 -73 810 240 18 0 chr11 133860494 133860665 -14922807 - MER5B DNA MER1_type 0 178 5 230 363 9 18 chr11 133861479 133861592 -14921880 - MIR SINE MIR -78 130 19 254 294 123 55 chr11 133862102 133862248 -14921224 - L2 LINE L2 -4 3268 3113 2157 133 0 3 chr11 133863865 133864167 -14919305 - AluSq SINE Alu -12 301 1 436 309 83 11 chr11 133866087 133866283 -14917189 + MIR SINE MIR 3 212 -50 203 260 13 52 chr11 133866845 133866922 -14916550 + L2 LINE L2 3187 3260 -12 319 217 48 0 chr11 133867189 133867272 -14916200 - L1ME4a LINE L1 0 6121 6035 817 265 62 25 chr11 133867355 133867713 -14915759 - L1ME4a LINE L1 -239 5882 5512 27 62 0 0 chr11 133867796 133867844 -14915628 + AT_rich Low_complexity Low_complexity 1 48 0 41 87 0 0 chr11 133868300 133868404 -14915068 + AT_rich Low_complexity Low_complexity 1 104 0 442 345 20 20 chr11 133868601 133868798 -14914674 - MIR3 SINE MIR -6 202 6 237 301 24 82 chr11 133870434 133870594 -14912878 + L1ME LINE L1 5457 5604 -517 2134 123 3 0 chr11 133870594 133870877 -14912595 + AluSx SINE Alu 1 287 -25 276 53 0 0 chr11 133870877 133870915 -14912557 + (CCAA)n Simple_repeat Simple_repeat 2 39 0 2134 123 3 0 chr11 133870915 133870941 -14912531 + AluSx SINE Alu 287 311 -1 237 301 24 82 chr11 133870941 133870986 -14912486 + L1ME LINE L1 5604 5650 -471 198 398 56 41 chr11 133871265 133871604 -14911868 + L2 LINE L2 2808 3151 -121 772 179 0 0 chr11 133871614 133871737 -14911735 + FLAM_C SINE Alu 1 123 -10 465 193 9 26 chr11 133871846 133871960 -14911512 + MLT1H1 LTR MaLR 32 143 -412 407 247 226 8 chr11 133871969 133872148 -14911324 + MLT1H1 LTR MaLR 74 288 -297 395 78 16 0 chr11 133872169 133872233 -14911239 + (GA)n Simple_repeat Simple_repeat 2 66 0 473 210 215 15 chr11 133872246 133872441 -14911031 + MLT1H1 LTR MaLR 322 555 0 240 209 0 0 chr11 133872445 133872488 -14910984 + L2 LINE L2 3267 3309 -4 550 183 53 0 chr11 133873511 133873642 -14909830 - L1MB4 LINE L1 -3 6177 6040 462 329 44 40 chr11 133873978 133874434 -14909038 + MLT1K LTR MaLR 129 586 -2 273 172 234 0 chr11 133874826 133874890 -14908582 - Tigger5 DNA MER2_type -2244 79 1 864 317 154 12 chr11 133875267 133875690 -14907782 + L3 LINE CR1 995 1477 -100 418 315 0 24 chr11 133876168 133876295 -14907177 - MIR SINE MIR -115 147 24 243 294 35 12 chr11 133876563 133876648 -14906824 + MIR SINE MIR 126 212 -50 348 266 196 14 chr11 133877109 133877252 -14906220 - MER5B DNA MER1_type -3 175 7 1648 299 161 21 chr11 133877329 133878605 -14904867 + L2 LINE L2 1842 3308 -5 279 294 123 44 chr11 133879085 133879313 -14904159 + L1MC/D LINE L1 5575 5820 -1988 309 51 0 0 chr11 133879638 133879677 -14903795 + (GA)n Simple_repeat Simple_repeat 1 39 0 249 284 105 11 chr11 133881363 133881458 -14902014 + L2 LINE L2 3163 3266 -6 578 204 147 32 chr11 133881461 133881618 -14901854 - FRAM SINE Alu -8 168 1 313 279 139 36 chr11 133881694 133881859 -14901613 + MIR SINE MIR 75 256 -6 325 253 13 0 chr11 133883479 133883558 -14899914 - MIR SINE MIR -74 188 109 353 346 11 0 chr11 133884369 133884484 -14898988 + MIR SINE MIR 34 150 -58 1900 200 44 65 chr11 133885207 133885772 -14897700 - L1ME2 LINE L1 -9 6155 5603 2058 205 114 9 chr11 133886774 133887769 -14895703 - L1MD1 LINE L1 -144 6596 5480 226 275 8 8 chr11 133887811 133887931 -14895541 + CT-rich Low_complexity Low_complexity 1 120 0 1292 226 45 37 chr11 133887931 133888396 -14895076 - L1MD1 LINE L1 -1200 5444 4976 423 0 0 0 chr11 133888417 133888464 -14895008 + (TG)n Simple_repeat Simple_repeat 2 48 0 741 140 0 0 chr11 133888475 133888589 -14894883 - AluSc SINE Alu -76 233 120 390 192 165 40 chr11 133888704 133888928 -14894544 - MER113 DNA MER1_type? -146 375 124 879 96 9 0 chr11 133889854 133889969 -14893503 - AluSg SINE Alu -194 116 1 5822 214 71 33 chr11 133889971 133893401 -14890071 - L1MD1 LINE L1 -1662 4982 1427 8431 221 44 33 chr11 133893414 133893775 -14889697 - L1MB3 LINE L1 -2 6417 6061 2259 109 10 0 chr11 133893775 133894078 -14889394 - AluSc SINE Alu -3 306 1 8431 221 44 33 chr11 133894078 133894580 -14888892 - L1MB3 LINE L1 -358 6061 5566 2114 16 0 12 chr11 133894580 133894830 -14888642 - L1PA4 LINE L1 -1 6154 5908 8431 221 44 33 chr11 133894830 133896797 -14886675 - L1MB3 LINE L1 -853 5566 3622 2204 115 0 7 chr11 133896797 133897092 -14886380 - AluSg SINE Alu -17 293 1 8431 221 44 33 chr11 133897092 133897126 -14886346 - L1MB3 LINE L1 -2797 3622 3590 809 145 0 8 chr11 133897126 133897257 -14886215 + FLAM_C SINE Alu 4 133 0 8431 221 44 33 chr11 133897257 133898315 -14885157 - L1MB3 LINE L1 -2829 3590 2439 1112 218 0 0 chr11 133898336 133898576 -14884896 - AluJb SINE Alu 0 323 84 275 221 65 45 chr11 133898615 133898742 -14884730 - L1MD1 LINE L1 -5182 1462 1328 2204 114 0 7 chr11 133898742 133899039 -14884433 + AluY SINE Alu 3 297 -14 275 221 65 45 chr11 133899039 133899110 -14884362 - L1MD1 LINE L1 -5316 1328 1260 * 1628 204 87 15 chr11 133899108 133899510 -14883962 - L1MD1 LINE L1 -6089 555 125 501 298 128 17 chr11 133899678 133899913 -14883559 - MIR SINE MIR 0 262 2 303 307 14 10 chr11 133900111 133900248 -14883224 - MIR SINE MIR -71 137 48 255 362 181 8 chr11 133901329 133901456 -14882016 - MIR3 SINE MIR -38 170 22 296 341 40 40 chr11 133901726 133901852 -14881620 - MIR3 SINE MIR -79 129 4 1834 220 27 2 chr11 133902243 133902693 -14880779 - L1ME1 LINE L1 -180 5986 5526 725 230 10 19 chr11 133902698 133902907 -14880565 + L1ME LINE L1 5312 5518 -648 282 303 0 0 chr11 133903614 133903713 -14879759 - L1MD1 LINE L1 -6390 152 54 1432 171 10 106 chr11 133903835 133904239 -14879233 + MLT1A1 LTR MaLR 1 365 0 7356 211 59 26 chr11 133904239 133905919 -14877553 + MLT1A1-int LTR MaLR 1 1735 0 319 123 0 35 chr11 133905919 133905976 -14877496 + MLT1A1 LTR MaLR 1 55 -373 686 194 8 45 chr11 133905976 133906084 -14877388 + FLAM_A SINE Alu 2 106 -205 2401 113 34 6 chr11 133906084 133906438 -14877034 + THE1B LTR MaLR 1 364 0 686 194 8 45 chr11 133906438 133906463 -14877009 + FLAM_A SINE Alu 106 130 -181 492 205 0 102 chr11 133906471 133906637 -14876835 + MLT1A1 LTR MaLR 47 195 -170 406 203 136 8 chr11 133906693 133906811 -14876661 + MLT1A1 LTR MaLR 185 317 -48 873 298 90 44 chr11 133906983 133908179 -14875293 - L1ME1 LINE L1 -1206 4940 3690 706 193 18 0 chr11 133908263 133908377 -14875095 - FLAM_A SINE Alu -17 116 1 200 300 103 77 chr11 133908538 133908888 -14874584 - L2 LINE L2 -879 2435 2077 642 146 0 10 chr11 133909328 133909431 -14874041 - FLAM_A SINE Alu -22 120 19 259 299 126 0 chr11 133909507 133909594 -14873878 - MIR3 SINE MIR -12 196 99 717 224 145 29 chr11 133910094 133910335 -14873137 - L2 LINE L2 -2 3311 3043 381 253 10 20 chr11 133910336 133910435 -14873037 - LTR16A LTR ERVL 0 450 353 4181 25 0 0 chr11 133910467 133910988 -14872484 - L1PA3 LINE L1 -1382 4764 4244 7828 19 0 0 chr11 133910990 133912381 -14871091 + L1PA3 LINE L1 4765 6155 0 2178 130 6 3 chr11 133912406 133912752 -14870720 + MER47A DNA MER2_type 20 366 0 768 269 95 16 chr11 133912755 133913060 -14870412 - LTR16A LTR ERVL -106 344 16 249 204 0 0 chr11 133913075 133913119 -14870353 - L2 LINE L2 -268 3045 3002 327 185 16 27 chr11 133913129 133913237 -14870235 - MIR SINE MIR -86 122 68 240 339 34 25 chr11 133913845 133913963 -14869509 - MIR SINE MIR -46 216 98 207 365 48 10 chr11 133914129 133914233 -14869239 + MIR3 SINE MIR 95 202 -6 235 305 114 0 chr11 133915878 133915983 -14867489 + MIR SINE MIR 32 148 -114 274 261 11 11 chr11 133916024 133916116 -14867356 + 7SK RNA RNA 8 99 -94 1074 173 14 41 chr11 133916472 133916692 -14866780 - MER20 DNA MER1_type 0 219 6 248 289 82 41 chr11 133916701 133916798 -14866674 + L2 LINE L2 3192 3292 -21 3480 256 61 34 chr11 133917564 133918845 -14864627 + L2 LINE L2 1750 3070 -243 359 261 43 9 chr11 133918889 133919004 -14864468 + L2 LINE L2 3195 3313 0 225 0 0 0 chr11 133919794 133919819 -14863653 + (T)n Simple_repeat Simple_repeat 1 25 0 252 0 0 0 chr11 133920013 133920041 -14863431 + (T)n Simple_repeat Simple_repeat 1 28 0 354 314 88 0 chr11 133920863 133921000 -14862472 - MIR3 SINE MIR -1 207 59 309 238 0 0 chr11 133923357 133923437 -14860035 + (TA)n Simple_repeat Simple_repeat 2 81 0 203 152 0 0 chr11 133923438 133923471 -14860001 + (CA)n Simple_repeat Simple_repeat 1 33 0 216 0 0 0 chr11 133924204 133924228 -14859244 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 984 18 0 0 chr11 133924788 133924902 -14858570 + (TC)n Simple_repeat Simple_repeat 1 114 0 1927 193 14 14 chr11 133926189 133926536 -14856936 + MLT2C1 LTR ERVL 1 347 -50 292 136 0 45 chr11 133926558 133926624 -14856848 + MLT2C1 LTR ERVL 455 517 -3 279 342 84 0 chr11 133927169 133927324 -14856148 + MIR SINE MIR 24 191 -71 1987 163 76 25 chr11 133927382 133927914 -14855558 - MLT2A2 LTR ERVL 0 554 1 2883 280 79 40 chr11 133927983 133928145 -14855327 + L2 LINE L2 1533 1687 -1626 210 37 0 0 chr11 133928145 133928172 -14855300 + (CCAA)n Simple_repeat Simple_repeat 1 27 0 2883 280 79 40 chr11 133928172 133929715 -14853757 + L2 LINE L2 1687 3313 0 204 300 0 14 chr11 133929817 133929887 -14853585 - L3 LINE CR1 -342 1235 1167 306 239 145 17 chr11 133930123 133930240 -14853232 + MIR SINE MIR 120 251 -11 1271 263 103 7 chr11 133930731 133931187 -14852285 - LTR33 LTR ERVL -19 502 3 837 175 170 52 chr11 133931404 133931585 -14851887 + L1ME3 LINE L1 5906 6121 -41 1688 146 101 4 chr11 133931585 133931853 -14851619 - AluJb SINE Alu -16 296 3 837 175 170 52 chr11 133931853 133931900 -14851572 + L1ME3 LINE L1 6121 6161 -1 1973 105 0 0 chr11 133933442 133933700 -14849772 + AluSc SINE Alu 28 285 -24 945 288 70 40 chr11 133933820 133934389 -14849083 - L2 LINE L2 -1 3312 2716 533 186 0 0 chr11 133934392 133934478 -14848994 - Tigger7 DNA MER2_type 0 2491 2406 1358 196 39 8 chr11 133934486 133934741 -14848731 - Tigger7 DNA MER2_type -2224 263 1 1622 255 106 34 chr11 133934745 133935427 -14848045 - L2 LINE L2 -604 2710 1980 1763 186 99 94 chr11 133935483 133936130 -14847342 + MLT1E1 LTR MaLR 1 650 -4 183 186 0 0 chr11 133936164 133936207 -14847265 + GA-rich Low_complexity Low_complexity 1 43 0 217 302 84 16 chr11 133936693 133936822 -14846650 + MIR SINE MIR 16 151 -69 780 306 111 17 chr11 133937802 133937930 -14845542 - L2 LINE L2 -1 3312 3197 180 0 0 0 chr11 133937930 133937950 -14845522 + (TA)n Simple_repeat Simple_repeat 2 21 0 780 306 111 17 chr11 133937950 133938181 -14845291 - L2 LINE L2 -116 3197 2919 240 265 0 0 chr11 133938191 133938259 -14845213 + (TTCA)n Simple_repeat Simple_repeat 1 68 0 1967 137 0 37 chr11 133938441 133938762 -14844710 - AluSx SINE Alu -3 309 1 248 290 213 11 chr11 133938838 133939021 -14844451 + MIR SINE MIR 20 239 -23 274 193 53 0 chr11 133939506 133939563 -14843909 + L2 LINE L2 3254 3313 0 711 88 0 0 chr11 133940089 133940202 -14843270 + (TTCC)n Simple_repeat Simple_repeat 2 114 0 1511 202 14 11 chr11 133940212 133940499 -14842973 - AluJb SINE Alu -24 288 1 21130 96 3 13 chr11 133940555 133944392 -14839080 - L1PA7 LINE L1 0 6469 2665 31 0 0 0 chr11 133944392 133944423 -14839049 + AT_rich Low_complexity Low_complexity 1 31 0 1124 144 4 79 chr11 133944531 133944760 -14838712 - AluY SINE Alu -99 212 1 10099 110 22 16 chr11 133944760 133944803 -14838669 - L1PA7 LINE L1 -3782 2679 2638 216 97 0 0 chr11 133944803 133944834 -14838638 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 10099 110 22 16 chr11 133944834 133946737 -14836735 - L1PA7 LINE L1 -3823 2638 713 886 238 222 37 chr11 133946890 133947349 -14836123 - MLT1H1 LTR MaLR -2 553 10 788 304 81 37 chr11 133947541 133947949 -14835523 + LTR16A LTR ERVL 8 433 -17 317 298 21 14 chr11 133947962 133948103 -14835369 + (CATATA)n Simple_repeat Simple_repeat 2 143 0 258 32 0 0 chr11 133948656 133948687 -14834785 + (TG)n Simple_repeat Simple_repeat 2 32 0 242 87 0 0 chr11 133948687 133948733 -14834739 + LTR66 LTR ERVL 394 439 -171 207 0 0 0 chr11 133948735 133948758 -14834714 + (CA)n Simple_repeat Simple_repeat 2 24 0 363 175 140 49 chr11 133949258 133949401 -14834071 + MLT1K LTR MaLR 429 584 -4 2091 120 7 0 chr11 133950386 133950669 -14832803 + AluSx SINE Alu 1 285 -27 405 0 0 0 chr11 133950676 133950721 -14832751 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 941 182 10 89 chr11 133950783 133950986 -14832486 - MER5A DNA MER1_type -2 187 1 207 0 0 0 chr11 133954789 133954812 -14828660 + (A)n Simple_repeat Simple_repeat 1 23 0 204 348 101 14 chr11 133955221 133955359 -14828113 + MIR3 SINE MIR 20 169 -39 384 175 52 41 chr11 133955702 133955799 -14827673 + MIR SINE MIR 10 107 -155 431 305 95 5 chr11 133955805 133956005 -14827467 - MIR SINE MIR -33 229 12 4512 60 4 0 chr11 133956045 133956595 -14826877 + MER41A LTR ERV1 3 554 0 256 191 0 0 chr11 133958451 133958498 -14824974 + MIR SINE MIR 201 247 -15 1522 203 127 8 chr11 133958756 133959110 -14824362 - MSTD LTR MaLR 0 396 1 264 200 0 0 chr11 133959769 133959839 -14823633 + GA-rich Low_complexity Low_complexity 4 73 0 280 191 22 22 chr11 133960835 133960924 -14822548 + GA-rich Low_complexity Low_complexity 4 92 0 276 304 66 36 chr11 133963191 133963367 -14820105 - MIR SINE MIR -66 142 16 334 349 109 42 chr11 133963465 133963915 -14819557 + L3 LINE CR1 52 531 -1046 195 235 176 12 chr11 133964784 133964869 -14818603 + MIR SINE MIR 43 141 -67 299 163 25 125 chr11 133965713 133965793 -14817679 - L2 LINE L2 0 3272 3201 233 314 0 0 chr11 133967798 133967868 -14815604 + CT-rich Low_complexity Low_complexity 1 70 0 207 69 0 0 chr11 133968097 133968126 -14815346 + (TCCA)n Simple_repeat Simple_repeat 1 29 0 721 244 89 49 chr11 133968611 133968836 -14814636 - MIR SINE MIR -16 246 13 8197 187 18 2 chr11 133969855 133971207 -14812265 - L1PA15 LINE L1 -4 6161 4763 288 0 0 0 chr11 133971207 133971239 -14812233 + (TG)n Simple_repeat Simple_repeat 2 33 0 8197 187 18 2 chr11 133971239 133972282 -14811190 - L1PA15 LINE L1 -1402 4763 3738 2542 60 0 16 chr11 133972464 133972780 -14810692 - AluY SINE Alu 0 311 1 2459 85 0 0 chr11 133975649 133975954 -14807518 + AluSq SINE Alu 9 313 0 385 301 49 31 chr11 133976408 133976571 -14806901 + MIR3 SINE MIR 40 205 -3 2726 218 91 42 chr11 133976746 133977732 -14805740 - L1M4 LINE L1 -1552 4594 3560 271 264 126 34 chr11 133977783 133978022 -14805450 - L1M4 LINE L1 -1983 4163 3903 3418 196 76 22 chr11 133978025 133979452 -14804020 - L1MB7 LINE L1 -9 6175 4677 23 33 0 0 chr11 133980458 133980488 -14802984 + AT_rich Low_complexity Low_complexity 1 30 0 227 54 27 0 chr11 133980505 133980542 -14802930 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 15404 17 4 0 chr11 133980542 133983089 -14800383 - L1HS LINE L1 -12 6143 3586 * 26412 42 39 2 chr11 133983086 133986415 -14797057 + L1HS LINE L1 140 3591 -2555 253 306 46 60 chr11 133986610 133986741 -14796731 + L1MEd LINE L1 643 774 -5431 2057 126 3 32 chr11 133986741 133987050 -14796422 + AluSq SINE Alu 1 300 -13 253 306 46 60 chr11 133987050 133987265 -14796207 + L1MEd LINE L1 774 984 -5221 666 290 47 49 chr11 133987356 133987769 -14795703 + L1MEd LINE L1 1370 1783 -4613 2228 98 14 0 chr11 133987769 133988066 -14795406 + AluSc SINE Alu 1 301 -8 666 290 47 49 chr11 133988066 133988100 -14795372 + L1MEd LINE L1 1783 1816 -4580 1796 93 37 15 chr11 133990078 133990176 -14793296 + AluY SINE Alu 37 131 -180 2246 52 48 14 chr11 133990176 133990466 -14793006 + AluY SINE Alu 1 300 -11 1796 93 37 15 chr11 133990466 133990636 -14792836 + AluY SINE Alu 131 311 0 216 313 92 80 chr11 133990711 133990874 -14792598 - MIR3 SINE MIR -28 180 16 623 293 122 4 chr11 133990976 133991205 -14792267 + MIR SINE MIR 7 262 0 583 291 64 39 chr11 133991606 133991840 -14791632 - MIR SINE MIR -10 252 13 14561 201 28 14 chr11 133992077 133997755 -14785717 + L1MA4 LINE L1 1220 6982 -20 361 301 19 0 chr11 133999113 133999216 -14784256 + MIR3 SINE MIR 75 179 -29 180 176 0 0 chr11 134001503 134001537 -14781935 + T-rich Low_complexity Low_complexity 1 34 0 1979 125 14 4 chr11 134002024 134002365 -14781107 - AluSq SINE Alu 0 344 1 1174 256 57 40 chr11 134003101 134003523 -14779949 - MLT1J LTR MaLR -7 504 33 402 313 127 0 chr11 134003524 134003690 -14779782 + MIR SINE MIR 47 233 -29 215 366 52 13 chr11 134003936 134004089 -14779383 + L2 LINE L2 2495 2653 -661 184 412 32 42 chr11 134004230 134004446 -14779026 + L2 LINE L2 2870 3083 -189 613 320 58 9 chr11 134004863 134005088 -14778384 - MIR SINE MIR -4 258 23 2305 99 0 7 chr11 134005145 134005448 -14778024 + AluSx SINE Alu 1 301 -11 393 321 19 0 chr11 134005962 134006068 -14777404 + MIR SINE MIR 40 147 -61 343 299 41 20 chr11 134006077 134006224 -14777248 + L1ME3A LINE L1 5998 6147 -23 3095 219 86 83 chr11 134006604 134007132 -14776340 - L1MD2 LINE L1 -14 6739 6214 2267 100 0 13 chr11 134007132 134007441 -14776031 - AluSg1 SINE Alu -4 305 1 3095 219 86 83 chr11 134007441 134007971 -14775501 - L1MD2 LINE L1 -539 6214 5687 266 87 22 0 chr11 134007971 134008017 -14775455 + (TA)n Simple_repeat Simple_repeat 2 48 0 3095 219 86 83 chr11 134008017 134008807 -14774665 - L1MD2 LINE L1 -1066 5687 4874 659 249 18 35 chr11 134008807 134008976 -14774496 - MER76 LTR ERV -227 461 296 567 256 0 13 chr11 134008997 134009153 -14774319 - L1MD2 LINE L1 -2309 4231 4078 2690 243 72 32 chr11 134009169 134010341 -14773131 - L1MD2 LINE L1 -2655 3885 2666 1125 200 14 0 chr11 134010350 134010565 -14772907 - AluJo SINE Alu -8 304 87 2973 214 64 71 chr11 134010568 134011736 -14771736 - L1MD2 LINE L1 -3867 2673 1513 369 298 154 49 chr11 134011855 134013233 -14770239 + L1MC/D LINE L1 3622 5144 -1002 1209 232 78 15 chr11 134013237 134013791 -14769681 + L1ME3A LINE L1 5561 6334 0 303 290 65 39 chr11 134013969 134014124 -14769348 + L1MC/D LINE L1 5273 5431 -747 39214 35 2 2 chr11 134014124 134017318 -14766154 + L1PA4 LINE L1 2 3193 -2962 2555 53 0 0 chr11 134017318 134017618 -14765854 + AluY SINE Alu 1 300 -11 39214 35 2 2 chr11 134017618 134020581 -14762891 + L1PA4 LINE L1 3193 6155 0 240 320 47 6 chr11 134020598 134020770 -14762702 + L1MC/D LINE L1 5428 5606 -636 1026 295 41 36 chr11 134020774 134021310 -14762162 - L2 LINE L2 -48 3265 2726 25 31 0 0 chr11 134021745 134021777 -14761695 + AT_rich Low_complexity Low_complexity 1 32 0 233 250 111 62 chr11 134021846 134021990 -14761482 - L1MC5 LINE L1 -29 7932 7782 559 222 123 35 chr11 134022106 134022309 -14761163 - L1ME1 LINE L1 -12 6154 5934 1349 316 54 36 chr11 134022337 134023278 -14760194 - L1MEc LINE L1 -5404 992 35 1108 221 53 66 chr11 134023406 134023813 -14759659 - L1MC5 LINE L1 -172 7789 7387 1800 197 88 28 chr11 134023813 134024244 -14759228 + MSTB2 LTR MaLR 1 457 0 1108 221 53 66 chr11 134024244 134024292 -14759180 - L1MC5 LINE L1 -574 7387 7340 2108 113 34 0 chr11 134024316 134024607 -14758865 - AluSx SINE Alu -9 303 3 1689 158 104 3 chr11 134025339 134025693 -14757779 - Charlie5 DNA MER1_type 0 2623 2234 690 192 0 0 chr11 134025690 134025815 -14757657 - Charlie5 DNA MER1_type -2485 127 3 * 787 231 31 70 chr11 134026554 134026608 -14756864 - MIR SINE MIR -6 256 201 1986 128 0 45 chr11 134026608 134026920 -14756552 - AluSx SINE Alu -2 310 13 787 231 31 70 chr11 134026920 134027094 -14756378 - MIR SINE MIR -61 201 37 232 317 65 32 chr11 134027472 134027595 -14755877 + L2 LINE L2 3134 3260 -12 421 319 71 7 chr11 134027632 134027773 -14755699 + MIR3 SINE MIR 26 175 -33 2242 74 0 58 chr11 134027826 134028160 -14755312 - AluY SINE Alu 0 311 1 209 365 0 17 chr11 134028706 134028821 -14754651 - MIR SINE MIR -65 143 31 541 347 81 61 chr11 134030377 134030449 -14753023 - L2 LINE L2 0 3272 3203 2397 103 0 3 chr11 134030449 134030761 -14752711 + AluSx SINE Alu 1 311 -1 541 347 81 61 chr11 134030761 134031097 -14752375 - L2 LINE L2 -69 3203 2856 570 232 238 5 chr11 134031105 134031290 -14752182 - MIR SINE MIR -17 245 18 2544 58 0 10 chr11 134031366 134031678 -14751794 + AluY SINE Alu 1 309 -2 326 330 0 0 chr11 134032034 134032128 -14751344 - L2 LINE L2 -1 3312 3219 772 219 0 8 chr11 134032327 134032455 -14751017 + FLAM_C SINE Alu 1 127 -6 345 314 40 34 chr11 134033610 134033785 -14749687 - MIR3 SINE MIR -24 184 9 1796 169 19 3 chr11 134033892 134034199 -14749273 - AluJo SINE Alu 0 312 1 1563 206 37 40 chr11 134034856 134035210 -14748262 - MLT1B LTR MaLR -37 353 1 440 178 103 19 chr11 134035844 134035951 -14747521 - MIR SINE MIR -77 185 70 314 127 32 32 chr11 134036890 134036953 -14746519 - MLT2B1 LTR ERVL 0 520 458 436 75 47 28 chr11 134036962 134037069 -14746403 + (TAGA)n Simple_repeat Simple_repeat 4 112 0 1718 212 21 8 chr11 134037073 134037507 -14745965 - MLT2B2 LTR ERVL -20 534 1 1584 181 74 88 chr11 134037695 134038209 -14745263 - MER84 LTR ERV1 0 507 1 194 194 0 0 chr11 134038297 134038328 -14745144 + MER5B DNA MER1_type 38 68 -110 299 341 12 0 chr11 134038625 134038710 -14744762 - MER5A DNA MER1_type -2 187 102 253 341 115 19 chr11 134039935 134040143 -14743329 - MIR SINE MIR 0 262 35 293 232 0 0 chr11 134040273 134040329 -14743143 + Tigger2 DNA MER2_type 11 66 -2652 * 2500 154 13 33 chr11 134040322 134040777 -14742695 + Tigger2 DNA MER2_type 2273 2718 0 914 295 257 21 chr11 134040863 134041147 -14742325 - L3 LINE CR1 -13 1564 1348 180 0 0 0 chr11 134041147 134041167 -14742305 + (CA)n Simple_repeat Simple_repeat 1 20 0 914 295 257 21 chr11 134041167 134041601 -14741871 - L3 LINE CR1 -229 1348 676 270 257 157 0 chr11 134041607 134041747 -14741725 + L1ME4a LINE L1 5856 6017 -104 29 28 0 0 chr11 134041764 134041800 -14741672 + AT_rich Low_complexity Low_complexity 1 36 0 1596 85 90 0 chr11 134043196 134043407 -14740065 - MER30 DNA MER1_type 0 230 1 323 229 0 0 chr11 134043736 134043797 -14739675 + L2 LINE L2 3190 3250 -22 200 205 0 0 chr11 134044147 134044186 -14739286 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 253 339 73 9 chr11 134044352 134044461 -14739011 - L2 LINE L2 -287 2985 2870 301 282 26 0 chr11 134044556 134044634 -14738838 + L2 LINE L2 3234 3313 0 235 227 0 0 chr11 134044634 134044678 -14738794 + (TGAA)n Simple_repeat Simple_repeat 2 45 0 201 280 143 72 chr11 134044697 134045018 -14738454 - L2 LINE L2 -901 2413 2070 364 265 56 112 chr11 134045877 134046073 -14737399 + MIR SINE MIR 13 197 -65 283 343 120 28 chr11 134047583 134047799 -14735673 + MIR SINE MIR 3 238 -24 2341 103 0 3 chr11 134047799 134048109 -14735363 - AluSx SINE Alu -3 309 1 1967 233 101 20 chr11 134048407 134048952 -14734520 - MLT1G1 LTR MaLR 0 595 7 278 252 31 12 chr11 134049361 134049491 -14733981 + MIR SINE MIR 36 219 -43 746 269 72 5 chr11 134050666 134050889 -14732583 - MIR SINE MIR -10 252 15 203 263 124 15 chr11 134051114 134051253 -14732219 + MIR SINE MIR 55 211 -51 388 341 104 9 chr11 134051535 134051755 -14731717 + L3b LINE CR1 1290 1530 -53 197 291 47 102 chr11 134052955 134053082 -14730390 + L3 LINE CR1 1447 1566 -11 1954 117 3 37 chr11 134053463 134053761 -14729711 - AluSx SINE Alu -22 290 3 1892 155 3 3 chr11 134054608 134054905 -14728567 + AluJb SINE Alu 14 310 -2 186 240 0 0 chr11 134054933 134054983 -14728489 + CT-rich Low_complexity Low_complexity 2 51 0 2954 255 156 51 chr11 134054995 134056152 -14727320 - HAL1 LINE L1 -351 2156 763 2516 20 41 3 chr11 134056152 134056447 -14727025 - AluY SINE Alu -5 306 1 2954 255 156 51 chr11 134056447 134056993 -14726479 - HAL1 LINE L1 -1744 763 275 324 0 0 0 chr11 134057132 134057168 -14726304 + (TG)n Simple_repeat Simple_repeat 2 37 0 272 250 24 36 chr11 134057607 134057682 -14725790 - L2 LINE L2 0 3313 3238 822 229 146 104 chr11 134057682 134058251 -14725221 + MLT1G1 LTR MaLR 1 593 -2 622 279 29 41 chr11 134059655 134059739 -14723733 + MIR SINE MIR 22 106 -156 1661 193 41 93 chr11 134059739 134060232 -14723240 - MLT1C LTR MaLR 0 467 1 622 279 29 41 chr11 134060232 134060391 -14723081 + MIR SINE MIR 106 262 0 871 65 0 0 chr11 134060696 134060804 -14722668 - L1P4 LINE L1 -504 5664 5557 1967 88 39 14 chr11 134060804 134061086 -14722386 + L1PA11 LINE L1 5883 6174 0 1609 225 48 69 chr11 134061819 134062340 -14721132 - MLT2B1 LTR ERVL 0 520 11 702 320 40 5 chr11 134062369 134062591 -14720881 + MIR SINE MIR 17 246 -16 2159 109 7 3 chr11 134062758 134063068 -14720404 + AluSq SINE Alu 1 311 0 2015 133 3 3 chr11 134063598 134063891 -14719581 - AluSg SINE Alu -15 295 3 2231 116 10 0 chr11 134064002 134064305 -14719167 - AluSx SINE Alu -6 306 1 3739 13 3 0 chr11 134064625 134065217 -14718255 + L1P1 LINE L1 5111 5704 -451 246 298 74 8 chr11 134065226 134065347 -14718125 + L2 LINE L2 2723 2851 -463 2430 141 3 0 chr11 134065374 134065757 -14717715 + MLT1B LTR MaLR 7 390 0 2188 124 0 3 chr11 134065890 134066196 -14717276 + AluSx SINE Alu 1 305 -7 392 239 134 40 chr11 134066481 134066682 -14716790 + MLT1J LTR MaLR 288 507 -4 298 387 77 12 chr11 134066890 134067101 -14716371 - L2 LINE L2 -322 2991 2769 55 16 0 0 chr11 134069746 134069808 -14713664 + AT_rich Low_complexity Low_complexity 1 62 0 662 311 130 54 chr11 134070248 134070747 -14712725 + L1ME4a LINE L1 2894 3354 -2792 3521 129 6 62 chr11 134070747 134071012 -14712460 + L1PA15 LINE L1 5560 5838 -327 1802 56 0 0 chr11 134071012 134071226 -14712246 + AluY SINE Alu 95 308 -3 3521 129 6 62 chr11 134071226 134071602 -14711870 + L1PA15 LINE L1 5838 6165 0 662 311 130 54 chr11 134071602 134072134 -14711338 + L1ME4a LINE L1 3354 4003 -2143 2203 95 0 0 chr11 134072508 134072825 -14710647 + AluSp SINE Alu 1 317 0 22 0 0 0 chr11 134072871 134072893 -14710579 + AT_rich Low_complexity Low_complexity 1 22 0 626 297 67 6 chr11 134073073 134073403 -14710069 + L1ME4a LINE L1 5521 5870 -251 226 252 70 17 chr11 134073417 134073532 -14709940 + L1ME4a LINE L1 5960 6080 -41 33 56 0 0 chr11 134074180 134074234 -14709238 + AT_rich Low_complexity Low_complexity 1 54 0 210 143 0 0 chr11 134075027 134075062 -14708410 + (TTCC)n Simple_repeat Simple_repeat 2 36 0 206 232 29 14 chr11 134075079 134075148 -14708324 + (TA)n Simple_repeat Simple_repeat 1 70 0 313 243 0 14 chr11 134075151 134075225 -14708247 + L1MCa LINE L1 2006 2078 -4348 1059 262 65 32 chr11 134075626 134076058 -14707414 - MLT1J1 LTR MaLR 0 446 1 2459 95 0 0 chr11 134078663 134078969 -14704503 - AluSg SINE Alu -4 306 1 1261 65 5 65 chr11 134079002 134079188 -14704284 - AluY SINE Alu -1 310 136 251 372 3 0 chr11 134080573 134080694 -14702778 + MIR SINE MIR 64 184 -61 217 308 96 19 chr11 134080936 134081040 -14702432 + MIR SINE MIR 70 181 -81 397 291 217 13 chr11 134081308 134081538 -14701934 + L3 LINE CR1 1275 1551 -26 1606 181 48 24 chr11 134082081 134082417 -14701055 - MER7A DNA MER2_type 0 346 5 465 275 14 7 chr11 134082691 134082829 -14700643 + L2 LINE L2 3172 3310 -3 191 269 45 30 chr11 134083855 134083922 -14699550 - L2 LINE L2 0 3272 3205 23 0 0 0 chr11 134084326 134084349 -14699123 + AT_rich Low_complexity Low_complexity 1 23 0 674 292 19 19 chr11 134084461 134084721 -14698751 + MIR SINE MIR 1 260 -2 244 267 45 109 chr11 134084900 134085147 -14698325 + MIR SINE MIR 32 262 0 260 235 37 37 chr11 134085328 134085409 -14698063 - MIR SINE MIR -64 198 118 1961 165 81 15 chr11 134085694 134086314 -14697158 - MER39 LTR ERV1 0 707 1 262 333 0 0 chr11 134088479 134088554 -14694918 + G-rich Low_complexity Low_complexity 3 77 0 200 342 0 0 chr11 134089059 134089135 -14694337 + GA-rich Low_complexity Low_complexity 4 79 0 204 0 83 0 chr11 134090223 134090259 -14693213 + (TA)n Simple_repeat Simple_repeat 1 39 0 317 313 46 38 chr11 134090323 134090454 -14693018 + MIR3 SINE MIR 38 169 -39 243 250 50 60 chr11 134090519 134090619 -14692853 + MIR SINE MIR 164 262 0 802 279 85 25 chr11 134090647 134091049 -14692423 - MARNA DNA Mariner -72 514 89 278 279 99 72 chr11 134091337 134091448 -14692024 - L2 LINE L2 -86 3186 3073 198 0 0 0 chr11 134091657 134091679 -14691793 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 2092 123 0 59 chr11 134092349 134092707 -14690765 - MER1B DNA MER1_type 0 337 1 46 33 0 0 chr11 134093369 134093429 -14690043 + AT_rich Low_complexity Low_complexity 1 60 0 458 263 90 28 chr11 134093463 134093647 -14689825 - MIR SINE MIR -52 156 12 399 195 0 0 chr11 134093820 134093897 -14689575 + MER116 DNA Mariner 4 80 0 1844 197 33 18 chr11 134094244 134094491 -14688981 + MLT1C LTR MaLR 1 260 -207 2144 149 32 64 chr11 134094491 134094927 -14688545 - MSTA LTR MaLR -4 424 3 1844 197 33 18 chr11 134094927 134095136 -14688336 + MLT1C LTR MaLR 260 464 -3 485 292 88 6 chr11 134095678 134095849 -14687623 - MIR SINE MIR -8 254 70 270 258 32 0 chr11 134096102 134096195 -14687277 + MIR SINE MIR 90 185 -77 322 203 0 0 chr11 134096598 134096662 -14686810 + L1MC4 LINE L1 6635 6698 -1344 312 233 53 0 chr11 134096733 134096866 -14686606 + (TA)n Simple_repeat Simple_repeat 1 140 0 673 256 44 116 chr11 134096984 134097328 -14686144 + L2 LINE L2 2983 3301 -12 571 302 107 32 chr11 134098204 134098701 -14684771 - L1MC4a LINE L1 -1781 6027 5494 1824 166 10 3 chr11 134099060 134099349 -14684123 - AluSx SINE Alu -21 291 1 315 311 131 33 chr11 134099670 134099853 -14683619 - L1ME3A LINE L1 -265 5905 5705 2351 98 0 19 chr11 134099854 134100171 -14683301 + AluSp SINE Alu 1 311 -2 389 304 96 8 chr11 134100245 134100495 -14682977 - L1ME3A LINE L1 -528 5638 5367 210 71 0 0 chr11 134100511 134100539 -14682933 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 1532 108 0 0 chr11 134100541 134100745 -14682727 - AluSq SINE Alu -109 204 1 2288 175 61 13 chr11 134100933 134101405 -14682067 + MLT1F1 LTR MaLR 28 522 -45 2152 123 25 31 chr11 134101405 134101763 -14681709 - MLT1A1 LTR MaLR 0 365 10 238 159 0 0 chr11 134101832 134101876 -14681596 + MLT1F1 LTR MaLR 499 542 0 289 196 57 115 chr11 134101975 134102184 -14681288 - L1M4 LINE L1 -2069 4077 3881 1060 242 0 9 chr11 134102389 134102451 -14681021 - MER58A DNA MER1_type -2199 221 160 2119 117 3 3 chr11 134102451 134102749 -14680723 - AluSq SINE Alu -15 298 1 1060 242 0 9 chr11 134102749 134102909 -14680563 - MER58A DNA MER1_type -2260 160 1 430 242 170 33 chr11 134102923 134103076 -14680396 - MER5A DNA MER1_type -7 182 9 952 300 156 14 chr11 134103176 134103810 -14679662 - L1M4 LINE L1 -2663 3483 2760 466 249 79 117 chr11 134105016 134105281 -14678191 - MIR SINE MIR 0 262 8 412 306 135 36 chr11 134105633 134105728 -14677744 - MLT1J2 LTR MaLR 0 450 366 2354 144 79 9 chr11 134105728 134106159 -14677313 - LOR1b LTR ERV1 0 461 1 412 306 135 36 chr11 134106159 134106455 -14677017 - MLT1J2 LTR MaLR -84 366 20 1141 245 68 65 chr11 134106616 134106818 -14676654 + MLT1F1 LTR MaLR 1 201 -366 2350 112 0 6 chr11 134106818 134107130 -14676342 - AluSg SINE Alu 0 310 1 1141 245 68 65 chr11 134107130 134107416 -14676056 + MLT1F1 LTR MaLR 201 490 -77 964 292 38 36 chr11 134109901 134110350 -14673122 + LTR16B LTR ERVL 3 452 -12 360 224 136 85 chr11 134110663 134110935 -14672537 - MER46C DNA MER2_type -51 287 2 586 285 42 85 chr11 134110951 134111211 -14672261 - MIR SINE MIR -12 250 2 218 250 60 48 chr11 134111327 134111411 -14672061 + MIR SINE MIR 104 188 -74 330 26 0 0 chr11 134111768 134111807 -14671665 + (TC)n Simple_repeat Simple_repeat 1 39 0 303 49 0 0 chr11 134111806 134111847 -14671625 + (CA)n Simple_repeat Simple_repeat 1 41 0 * 388 307 119 11 chr11 134112509 134112685 -14670787 + MIR SINE MIR 67 261 -1 448 282 34 67 chr11 134113403 134113612 -14669860 + MIR SINE MIR 55 256 -6 232 324 0 0 chr11 134113625 134113693 -14669779 + (TAG)n Simple_repeat Simple_repeat 1 68 0 891 212 159 34 chr11 134114012 134114427 -14669045 + MLT1C LTR MaLR 1 467 0 257 246 16 0 chr11 134114896 134114986 -14668486 + (TGAA)n Simple_repeat Simple_repeat 1 91 0 2320 63 0 11 chr11 134115241 134115550 -14667922 + AluY SINE Alu 1 306 0 289 345 125 12 chr11 134115625 134116048 -14667424 - L2 LINE L2 -931 2383 1913 287 272 9 0 chr11 134117280 134117394 -14666078 + (TA)n Simple_repeat Simple_repeat 1 115 0 2441 66 0 13 chr11 134119139 134119444 -14664028 + AluY SINE Alu 1 301 -10 1144 115 150 0 chr11 134119482 134119682 -14663790 + MER30 DNA MER1_type 1 230 0 635 312 41 34 chr11 134119749 134120041 -14663431 - MLT1I LTR MaLR -18 391 98 292 305 137 8 chr11 134120190 134120321 -14663151 + L2 LINE L2 3166 3313 0 311 365 115 4 chr11 134121715 134121975 -14661497 + L2 LINE L2 2100 2388 -926 2360 111 0 0 chr11 134122920 134123226 -14660246 + AluSx SINE Alu 1 306 -6 571 146 0 0 chr11 134123271 134123367 -14660105 + L1MD3 LINE L1 7900 7995 0 209 327 118 0 chr11 134124965 134125075 -14658397 + MIR SINE MIR 82 204 -58 2082 130 0 7 chr11 134127109 134127408 -14656064 - AluSx SINE Alu -15 297 1 201 186 0 47 chr11 134127479 134127522 -14655950 - MER91B DNA MER1_type -129 61 21 1339 249 60 18 chr11 134129345 134129846 -14653626 + L1M4 LINE L1 4483 5004 -1142 198 0 0 0 chr11 134129895 134129917 -14653555 + (A)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr11 134129972 134129993 -14653479 + AT_rich Low_complexity Low_complexity 1 21 0 371 232 37 55 chr11 134130200 134130364 -14653108 + L1ME LINE L1 3075 3235 -2911 403 296 34 10 chr11 134130535 134130741 -14652731 + L1ME LINE L1 3728 3938 -2208 * 688 300 69 46 chr11 134130739 134131129 -14652343 + L1MCc LINE L1 895 1293 -5130 458 220 9 0 chr11 134131131 134131240 -14652232 + L1ME LINE L1 4838 4947 -1199 * 862 206 84 8 chr11 134131234 134131496 -14651976 + L1ME LINE L1 5300 5578 -588 1603 299 11 14 chr11 134131506 134132072 -14651400 + L1M4 LINE L1 8 571 -5971 505 217 0 35 chr11 134132080 134132195 -14651277 + L1M4 LINE L1 709 819 -5723 1189 234 201 9 chr11 134132204 134132628 -14650844 + MLT1D LTR MaLR 1 505 0 1929 213 62 10 chr11 134132629 134133211 -14650261 + L1M4 LINE L1 828 1439 -5103 5513 157 37 31 chr11 134133225 134133448 -14650024 + L1PBa LINE L1 1783 2003 -4859 2188 128 3 0 chr11 134133448 134133753 -14649719 + AluSc SINE Alu 1 306 -3 5513 157 37 31 chr11 134133753 134135353 -14648119 + L1PBa LINE L1 2003 3620 -3242 2247 135 0 0 chr11 134135353 134135665 -14647807 + AluSx SINE Alu 1 312 0 5513 157 37 31 chr11 134135665 134135693 -14647779 + L1PBa LINE L1 3620 3646 -3216 262 333 0 0 chr11 134136294 134136369 -14647103 + C-rich Low_complexity Low_complexity 3 77 0 1961 163 72 12 chr11 134138534 134139154 -14644318 + MER39 LTR ERV1 1 707 0 260 235 37 37 chr11 134139439 134139520 -14643952 + MIR SINE MIR 118 198 -64 244 267 45 109 chr11 134139701 134139948 -14643524 - MIR SINE MIR 0 262 32 674 292 19 19 chr11 134140127 134140387 -14643085 - MIR SINE MIR -2 260 1 23 0 0 0 chr11 134140503 134140526 -14642946 + AT_rich Low_complexity Low_complexity 1 23 0 191 269 45 30 chr11 134140930 134140997 -14642475 + L2 LINE L2 3205 3272 0 465 275 14 7 chr11 134142023 134142161 -14641311 - L2 LINE L2 -3 3310 3172 1589 184 48 24 chr11 134142435 134142771 -14640701 + MER7A DNA MER2_type 5 346 0 397 291 217 13 chr11 134143314 134143544 -14639928 - L3 LINE CR1 -26 1551 1275 217 308 96 19 chr11 134143812 134143916 -14639556 - MIR SINE MIR -81 181 70 251 372 3 0 chr11 134144158 134144279 -14639193 - MIR SINE MIR -61 147 64 1261 65 5 65 chr11 134145664 134145850 -14637622 + AluY SINE Alu 136 310 -1 2358 98 0 0 chr11 134145883 134146178 -14637294 + AluSg SINE Alu 1 295 -15 2162 109 7 3 chr11 134146708 134147018 -14636454 - AluSq SINE Alu 0 311 1 719 320 40 5 chr11 134147185 134147407 -14636065 - MIR SINE MIR -16 246 17 1419 232 46 67 chr11 134147436 134147957 -14635515 + MLT2B1 LTR ERVL 11 520 0 1824 88 39 14 chr11 134148690 134148975 -14634497 - L1PA11 LINE L1 0 6174 5883 780 67 0 0 chr11 134148975 134149080 -14634392 + L1P4 LINE L1 5560 5664 -504 641 279 29 41 chr11 134149385 134149544 -14633928 - MIR SINE MIR 0 262 106 1572 186 36 95 chr11 134149544 134150040 -14633432 + MLT1C LTR MaLR 1 467 0 641 279 29 41 chr11 134150040 134150124 -14633348 - MIR SINE MIR -156 106 22 527 241 133 80 chr11 134151524 134152093 -14631379 - MLT1G LTR MaLR -2 593 1 262 240 27 40 chr11 134152093 134152168 -14631304 + L2 LINE L2 3240 3313 0 288 0 0 0 chr11 134152607 134152639 -14630833 + (CA)n Simple_repeat Simple_repeat 2 33 0 507 289 142 74 chr11 134152778 134153321 -14630151 + HAL1 LINE L1 275 854 -1653 2490 20 40 3 chr11 134153324 134153620 -14629852 + AluY SINE Alu 1 307 -4 189 0 0 0 chr11 134153811 134153832 -14629640 + (A)n Simple_repeat Simple_repeat 1 21 0 1676 210 5 9 chr11 134153832 134154280 -14629192 + L1PB1 LINE L1 2896 3341 -2805 5516 159 14 9 chr11 134154282 134156070 -14627402 + L1PB1 LINE L1 4364 6151 0 1682 256 56 67 chr11 134156097 134156944 -14626528 + L1ME1 LINE L1 1154 2159 -4404 1766 154 51 51 chr11 134156944 134157334 -14626138 - MLT1B LTR MaLR 0 390 1 1682 256 56 67 chr11 134157334 134157729 -14625743 + L1ME1 LINE L1 2159 2557 -4006 29 0 0 0 chr11 134157734 134157763 -14625709 + AT_rich Low_complexity Low_complexity 1 29 0 485 273 119 23 chr11 134158128 134158304 -14625168 - MIR SINE MIR -48 214 22 1089 228 48 0 chr11 134158400 134158711 -14624761 + L1ME1 LINE L1 4486 4811 -1571 473 226 70 51 chr11 134158796 134159104 -14624368 + L1ME1 LINE L1 6067 6528 -42 2718 223 93 6 chr11 134159138 134159940 -14623532 + L1ME1 LINE L1 5526 6397 -5 351 324 81 31 chr11 134159951 134160210 -14623262 + L1MC/D LINE L1 3927 4198 -1948 331 278 86 37 chr11 134160301 134160733 -14622739 + L1MC/D LINE L1 4297 4749 -1397 399 313 65 40 chr11 134160892 134161167 -14622305 + L1MC/D LINE L1 4952 5233 -913 1784 205 107 7 chr11 134161188 134161646 -14621826 + L1MC/D LINE L1 5258 5761 -2047 180 0 0 0 chr11 134161691 134161711 -14621761 + (A)n Simple_repeat Simple_repeat 1 20 0 218 313 15 0 chr11 134162851 134162918 -14620554 - L2 LINE L2 -2 3311 3244 1482 104 35 23 chr11 134163517 134163777 -14619695 + L1MA5 LINE L1 6038 6300 0 834 167 6 0 chr11 134163853 134164021 -14619451 + L1MA4 LINE L1 6090 6258 -42 607 256 84 48 chr11 134164057 134164307 -14619165 + L3 LINE CR1 1215 1473 -104 200 265 88 15 chr11 134164307 134164375 -14619097 - MER5A DNA MER1_type 0 189 117 957 266 87 56 chr11 134164777 134165224 -14618248 - MLT1J LTR MaLR -50 461 1 204 393 49 28 chr11 134165373 134165658 -14617814 - L2 LINE L2 -717 2597 2307 723 108 0 9 chr11 134165699 134165810 -14617662 + L1PB1 LINE L1 6037 6146 -5 1156 88 0 16 chr11 134165815 134165997 -14617475 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 1982 177 103 4 chr11 134166948 134167423 -14616049 - Charlie1b DNA MER1_type 0 523 2 735 299 19 19 chr11 134167464 134167678 -14615794 - MIR SINE MIR -4 258 45 397 242 11 0 chr11 134167800 134167895 -14615577 - MIR SINE MIR -48 214 119 2025 124 0 0 chr11 134167993 134168268 -14615204 + AluSx SINE Alu 1 275 -37 216 0 0 0 chr11 134168268 134168292 -14615180 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 182 36 0 36 chr11 134169331 134169359 -14614113 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 3585 126 40 10 chr11 134169579 134169838 -14613634 + L1MB3 LINE L1 5564 5814 -369 2111 141 0 0 chr11 134169838 134170142 -14613330 + AluSx SINE Alu 1 304 -8 3585 126 40 10 chr11 134170142 134170484 -14612988 + L1MB3 LINE L1 5814 6183 0 1320 198 74 19 chr11 134171217 134171540 -14611932 - MER58B DNA MER1_type 0 341 1 937 289 28 4 chr11 134171644 134171897 -14611575 + MIR SINE MIR 3 261 -1 327 160 350 0 chr11 134171991 134172091 -14611381 + MER39 LTR ERV1 1 135 -572 * 1343 238 28 59 chr11 134172066 134172525 -14610947 + MER39 LTR ERV1 260 704 -3 471 317 5 32 chr11 134172920 134173102 -14610370 + MIR SINE MIR 15 191 -66 2737 129 19 19 chr11 134173940 134174365 -14609107 - MSTC LTR MaLR 0 428 4 454 274 91 41 chr11 134175540 134175737 -14607735 + MIR SINE MIR 40 246 -16 1571 217 71 23 chr11 134175857 134176295 -14607177 - LTR40b LTR ERVL -1 461 3 227 359 52 85 chr11 134177013 134177261 -14606211 - L2 LINE L2 -34 3238 2999 236 388 0 0 chr11 134177274 134177359 -14606113 - MIR SINE MIR -66 142 58 265 184 0 58 chr11 134177693 134177780 -14605692 + GA-rich Low_complexity Low_complexity 6 87 0 2207 101 9 17 chr11 134177789 134178136 -14605336 + L1PA14 LINE L1 5818 6161 0 610 298 152 30 chr11 134179316 134179712 -14603760 - LTR16A LTR ERVL -13 437 1 305 169 0 15 chr11 134181007 134181072 -14602400 + (CATA)n Simple_repeat Simple_repeat 2 65 0 390 289 16 16 chr11 134181211 134181339 -14602133 + MIR SINE MIR 36 163 -99 203 330 28 135 chr11 134182806 134183088 -14600384 - L2 LINE L2 -65 3207 2956 702 290 55 31 chr11 134183451 134183706 -14599766 - MIR SINE MIR 0 262 2 21 71 0 0 chr11 134183826 134183868 -14599604 + AT_rich Low_complexity Low_complexity 1 42 0 222 156 47 16 chr11 134183971 134184035 -14599437 + GA-rich Low_complexity Low_complexity 4 69 0 1491 213 81 15 chr11 134184035 134184501 -14598971 - MER39 LTR ERV1 0 707 1 354 196 28 9 chr11 134184504 134184611 -14598861 + GA-rich Low_complexity Low_complexity 3 111 0 200 374 44 11 chr11 134184613 134184704 -14598768 - MIR SINE MIR -66 142 49 21 0 0 0 chr11 134184767 134184788 -14598684 + AT_rich Low_complexity Low_complexity 1 21 0 1297 193 48 16 chr11 134185372 134185666 -14597806 + MSTB LTR MaLR 113 426 0 11323 57 2 0 chr11 134185669 134187918 -14595554 + L1PA5 LINE L1 3900 6153 -1 191 228 0 70 chr11 134189284 134189341 -14594131 - MIR SINE MIR -5 257 205 316 271 56 19 chr11 134189386 134189493 -14593979 - MER94 DNA DNA 0 134 24 328 354 99 11 chr11 134190129 134190310 -14593162 + MIR SINE MIR 3 199 -63 231 305 0 0 chr11 134190777 134190836 -14592636 + L3 LINE CR1 1052 1110 -467 5487 106 14 17 chr11 134191524 134192474 -14590998 + L1PB1 LINE L1 5200 6146 -5 278 246 16 0 chr11 134192729 134192790 -14590682 - L2 LINE L2 -2 3270 3209 288 305 0 0 chr11 134193071 134193153 -14590319 + L3 LINE CR1 1148 1229 -348 2500 220 55 32 chr11 134194422 134195533 -14587939 + L1MCa LINE L1 973 2299 -4308 426 86 0 0 chr11 134195756 134195814 -14587658 + U6 snRNA snRNA 47 104 -3 268 302 45 89 chr11 134196740 134196919 -14586553 - MIR SINE MIR 0 262 92 2147 128 0 0 chr11 134197056 134197354 -14586118 + AluSg SINE Alu 1 298 -12 204 388 48 0 chr11 134197506 134197609 -14585863 + MIR3 SINE MIR 9 116 -92 344 311 40 0 chr11 134197934 134198082 -14585390 + MER117 DNA MER1_type 5 158 -39 294 306 151 60 chr11 134198099 134198331 -14585141 + MIR SINE MIR 4 256 -6 1054 107 10 10 chr11 134199708 134200018 -14583454 + (GAAA)n Simple_repeat Simple_repeat 1 310 0 214 282 59 0 chr11 134200087 134200172 -14583300 + L2 LINE L2 2296 2385 -929 260 289 30 25 chr11 134201196 134201333 -14582139 - MIR SINE MIR -64 144 56 4430 123 21 48 chr11 134201481 134202331 -14581141 + L1PA13 LINE L1 5336 6162 -1 195 139 0 0 chr11 134202699 134202735 -14580737 + (ATG)n Simple_repeat Simple_repeat 1 36 0 417 273 28 57 chr11 134202944 134202995 -14580477 - MIR3 SINE MIR 0 208 157 515 264 92 11 chr11 134202995 134203169 -14580303 + MER5A DNA MER1_type 2 189 0 417 273 28 57 chr11 134203169 134203293 -14580179 - MIR3 SINE MIR -51 157 38 507 321 66 9 chr11 134203590 134203908 -14579564 + LTR16B LTR ERVL 129 464 0 483 272 78 35 chr11 134204116 134204437 -14579035 + MLT1I LTR MaLR 93 409 0 2596 52 7 0 chr11 134204703 134205008 -14578464 + AluY SINE Alu 1 307 -4 3047 91 23 9 chr11 134205869 134206307 -14577165 + MLT2A1 LTR ERVL 1 444 0 35327 71 11 14 chr11 134206307 134211158 -14572314 + HERVL-A1 LTR ERVL 1 4835 -819 2244 79 7 3 chr11 134411863 134412166 -14371306 - AluSp SINE Alu -9 304 1 2467 62 7 0 chr11 134412176 134412485 -14370987 - AluY SINE Alu 0 311 1 1980 106 35 3 chr11 134412806 134413088 -14370384 - AluSx SINE Alu -21 291 1 456 208 139 0 chr11 134413594 134413695 -14369777 + FLAM_C SINE Alu 3 117 -16 945 183 5 16 chr11 134413788 134413974 -14369498 + AluSq SINE Alu 1 184 -129 2233 84 3 3 chr11 134414139 134414447 -14369025 - AluY SINE Alu -3 308 1 2889 265 181 6 chr11 134414456 134415736 -14367736 - L2 LINE L2 -19 3294 1767 267 233 190 17 chr11 134416029 134416145 -14367327 - MIR3 SINE MIR -48 160 25 * 373 267 145 29 chr11 134416082 134416254 -14367218 + MIR SINE MIR 59 250 -12 1151 172 0 5 chr11 134416254 134416469 -14367003 - AluJb SINE Alu -14 298 85 419 246 126 60 chr11 134416681 134416880 -14366592 - MIR SINE MIR -17 245 34 1898 129 0 52 chr11 134417082 134417408 -14366064 + AluSx SINE Alu 1 309 -3 1121 168 0 15 chr11 134418916 134419118 -14364354 + AluJb SINE Alu 85 283 -29 618 272 88 44 chr11 134419992 134420062 -14363410 - MIR SINE MIR 0 262 197 2496 52 0 0 chr11 134420062 134420371 -14363101 + AluY SINE Alu 1 309 -2 618 272 88 44 chr11 134420371 134420550 -14362922 - MIR SINE MIR -65 197 2 433 266 14 25 chr11 134420626 134420780 -14362692 - MIR SINE MIR -62 146 3 280 255 92 10 chr11 134420957 134421055 -14362417 + L3 LINE CR1 1403 1508 -69 257 295 86 86 chr11 134421055 134421265 -14362207 + LTR67 LTR ERVL 20 229 -328 300 209 146 45 chr11 134421278 134421388 -14362084 + LTR67 LTR ERVL 405 525 -32 277 330 19 29 chr11 134421426 134421529 -14361943 + MER5A DNA MER1_type 16 117 -72 389 48 7 7 chr11 134421544 134421611 -14361861 - AluY SINE Alu -3 298 248 181 210 81 32 chr11 134422031 134422093 -14361379 + MIR SINE MIR 82 146 -62 2600 42 3 0 chr11 134422100 134422409 -14361063 + AluY SINE Alu 1 310 -1 196 318 61 0 chr11 134423524 134423590 -14359882 - MIR SINE MIR -98 164 95 404 314 68 5 chr11 134424757 134424948 -14358524 + MIR SINE MIR 52 254 -8 2129 97 10 0 chr11 134425134 134425432 -14358040 - AluSx SINE Alu -11 301 1 1698 137 18 18 chr11 134426052 134426330 -14357142 - AluJb SINE Alu -22 290 13 22 35 0 0 chr11 134426580 134426609 -14356863 + AT_rich Low_complexity Low_complexity 1 29 0 1979 86 0 77 chr11 134426719 134426875 -14356597 + AluSx SINE Alu 1 121 -191 2367 48 0 0 chr11 134426875 134427205 -14356267 + AluY SINE Alu 1 311 0 1979 86 0 77 chr11 134427205 134427374 -14356098 + AluSx SINE Alu 121 301 -11 976 133 13 0 chr11 134427378 134427528 -14355944 + AluSg/x SINE Alu 122 273 -39 238 153 34 17 chr11 134427528 134427587 -14355885 + GA-rich Low_complexity Low_complexity 1 60 0 2189 106 0 3 chr11 134428652 134428953 -14354519 + AluSx SINE Alu 3 302 -10 377 187 45 108 chr11 134429743 134429932 -14353540 + MIR SINE MIR 14 182 -68 2051 106 26 10 chr11 134429999 134430302 -14353170 + AluSx SINE Alu 1 308 -4 477 301 19 26 chr11 134430441 134430597 -14352875 - L2 LINE L2 0 3313 3159 2189 91 37 0 chr11 134430921 134431219 -14352253 + AluSp SINE Alu 1 309 -4 279 349 126 8 chr11 134431316 134431571 -14351901 + L2 LINE L2 3025 3309 -4 718 210 129 82 chr11 134431815 134432041 -14351431 + L1MC5 LINE L1 7329 7543 -418 306 0 0 0 chr11 134432041 134432075 -14351397 + (CA)n Simple_repeat Simple_repeat 1 34 0 718 210 129 82 chr11 134432075 134432185 -14351287 + L1MC5 LINE L1 7543 7646 -315 2039 106 33 0 chr11 134432185 134432486 -14350986 - AluSx SINE Alu -1 311 1 718 210 129 82 chr11 134432486 134432552 -14350920 + L1MC5 LINE L1 7646 7751 -210 400 86 17 0 chr11 134432562 134432620 -14350852 - Alu SINE Alu -13 299 241 308 254 28 0 chr11 134432736 134432807 -14350665 + MER58B DNA MER1_type 268 340 -1 345 332 95 38 chr11 134432881 134433050 -14350422 - L1M4 LINE L1 -925 5221 5063 928 136 8 0 chr11 134433050 134433182 -14350290 - FLAM_C SINE Alu 0 133 1 345 332 95 38 chr11 134433182 134433328 -14350144 - L1M4 LINE L1 -1083 5063 4888 939 187 0 0 chr11 134433365 134433520 -14349952 + FRAM SINE Alu 1 155 -21 2863 172 83 59 chr11 134433574 134433975 -14349497 - LTR8A LTR ERV1 0 727 300 1951 140 3 0 chr11 134433975 134434268 -14349204 + AluSx SINE Alu 1 294 -18 2863 172 83 59 chr11 134434268 134434576 -14348896 - LTR8A LTR ERV1 -427 300 1 231 271 19 65 chr11 134434807 134434876 -14348596 - MIR SINE MIR -46 216 152 2425 50 0 3 chr11 134434876 134435176 -14348296 - AluY SINE Alu -12 299 1 231 271 19 65 chr11 134435176 134435213 -14348259 - MIR SINE MIR -110 152 115 1184 274 47 87 chr11 134435236 134435890 -14347582 - MER21B LTR ERV1 -186 677 50 284 269 86 0 chr11 134435931 134436024 -14347448 - MIR SINE MIR -136 126 26 2326 56 12 37 chr11 134436027 134436348 -14347124 - AluSq SINE Alu 0 313 1 784 99 0 0 chr11 134436372 134436473 -14346999 - U6 snRNA snRNA 0 107 7 1935 174 146 35 chr11 134437163 134437656 -14345816 + LTR10A LTR ERV1 1 548 -61 25 65 0 0 chr11 134438049 134438095 -14345377 + AT_rich Low_complexity Low_complexity 1 46 0 396 0 0 0 chr11 134438212 134438256 -14345216 + (CA)n Simple_repeat Simple_repeat 1 44 0 262 73 0 49 chr11 134438959 134439000 -14344472 + THE1C LTR MaLR 1 39 -336 7140 71 1 21 chr11 134439048 134440873 -14342599 - L1PA8 LINE L1 0 6172 4369 1995 122 46 32 chr11 134440874 134441219 -14342253 + THE1C LTR MaLR 26 375 0 2208 100 0 7 chr11 134441635 134441936 -14341536 + AluSq SINE Alu 3 301 -12 235 362 34 13 chr11 134441936 134442085 -14341387 - MIR3 SINE MIR -3 205 54 1127 191 39 224 chr11 134442521 134442779 -14340693 - L1ME1 LINE L1 -325 6235 5931 643 202 23 0 chr11 134442779 134442908 -14340564 + AluJo SINE Alu 5 136 -176 1127 191 39 224 chr11 134442908 134443085 -14340387 - L1ME1 LINE L1 -629 5931 5864 2226 100 0 0 chr11 134443085 134443385 -14340087 - AluSx SINE Alu -4 308 9 1127 191 39 224 chr11 134443385 134443640 -14339832 - L1ME1 LINE L1 -696 5864 5564 1024 157 6 6 chr11 134443659 134443825 -14339647 + AluJo SINE Alu 137 302 0 3464 198 55 81 chr11 134443840 134444047 -14339425 - L1ME1 LINE L1 -4287 2253 2042 2008 124 3 13 chr11 134444047 134444362 -14339110 - AluSx SINE Alu 0 312 1 3464 198 55 81 chr11 134444362 134444739 -14338733 - L1ME1 LINE L1 -4498 2042 1657 2262 105 0 3 chr11 134444739 134445052 -14338420 - AluSx SINE Alu 0 312 1 3464 198 55 81 chr11 134445052 134445892 -14337580 - L1ME1 LINE L1 -4883 1657 903 2175 104 16 3 chr11 134446111 134446485 -14336987 + AluSx SINE Alu 1 378 0 272 291 29 29 chr11 134446958 134447061 -14336411 - L1ME1 LINE L1 -6411 129 27 2048 109 27 0 chr11 134447350 134447644 -14335828 + AluSc SINE Alu 1 302 -7 2089 120 3 0 chr11 134447644 134447945 -14335527 + AluSp SINE Alu 1 302 -11 261 0 0 0 chr11 134448050 134448079 -14335393 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 2137 72 38 3 chr11 134448211 134448502 -14334970 + AluSq SINE Alu 1 301 -12 307 269 15 77 chr11 134448694 134448824 -14334648 + L1MCa LINE L1 2250 2371 -4055 257 211 26 0 chr11 134448836 134448912 -14334560 + L1MCa LINE L1 3163 3240 -3186 600 301 98 55 chr11 134448937 134449355 -14334117 + L1MCa LINE L1 3412 3847 -2579 2205 113 3 0 chr11 134449397 134449707 -14333765 + AluSx SINE Alu 1 311 -1 370 193 5 168 chr11 134449707 134449909 -14333563 + HAL1 LINE L1 2339 2507 0 244 402 27 5 chr11 134451210 134451394 -14332078 - MIR SINE MIR -70 192 5 1627 198 45 28 chr11 134451643 134451799 -14331673 + MLT1A1 LTR MaLR 1 153 -212 2283 82 3 3 chr11 134451799 134452102 -14331370 + AluSp SINE Alu 1 303 -10 1627 198 45 28 chr11 134452102 134452304 -14331168 + MLT1A1 LTR MaLR 153 365 0 1708 154 11 3 chr11 134452977 134453262 -14330210 + AluSx SINE Alu 1 287 -25 2178 90 3 0 chr11 134453736 134454024 -14329448 + AluSx SINE Alu 5 293 -19 2240 86 0 3 chr11 134455094 134455397 -14328075 - AluY SINE Alu -9 302 1 218 231 0 0 chr11 134455444 134455483 -14327989 - L2 LINE L2 -9 3263 3225 2188 98 0 3 chr11 134455716 134456013 -14327459 + AluSq SINE Alu 1 296 -17 813 178 7 0 chr11 134456523 134456669 -14326803 + FRAM SINE Alu 1 146 -30 189 0 0 0 chr11 134456673 134456694 -14326778 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 2127 110 0 3 chr11 134457745 134458045 -14325427 + AluSx SINE Alu 1 299 -13 1654 162 3 17 chr11 134458659 134459057 -14324415 + AluJb SINE Alu 1 312 0 216 303 71 20 chr11 134459074 134459173 -14324299 - MIR SINE MIR -79 183 80 1999 120 3 0 chr11 134459395 134459695 -14323777 + AluSq SINE Alu 3 303 -10 497 344 25 22 chr11 134460461 134460704 -14322768 + MIR SINE MIR 1 243 -19 861 128 7 0 chr11 134461088 134461229 -14322243 - AluSp/q SINE Alu -10 303 162 207 150 0 25 chr11 134461229 134461269 -14322203 + MIR SINE MIR 112 150 -112 1684 135 99 0 chr11 134461936 134462218 -14321254 + AluSx SINE Alu 1 310 -2 2143 125 0 0 chr11 134462293 134462605 -14320867 + AluSx SINE Alu 1 312 0 191 36 36 0 chr11 134462934 134462962 -14320510 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 2229 99 0 0 chr11 134463279 134463633 -14319839 + AluSx SINE Alu 1 354 0 189 0 0 0 chr11 134463940 134463961 -14319511 + (TTCC)n Simple_repeat Simple_repeat 1 21 0 910 194 0 0 chr11 134463964 134464124 -14319348 - FAM SINE Alu -20 165 6 789 244 132 15 chr11 134464137 134464477 -14318995 + MER113 DNA MER1_type? 91 470 -51 180 350 12 12 chr11 134464537 134464617 -14318855 + L2 LINE L2 3234 3313 0 2251 97 7 0 chr11 134464644 134464952 -14318520 - AluSx SINE Alu -2 310 1 1158 162 63 153 chr11 134465189 134465684 -14317788 + LTR7 LTR ERV1 1 450 0 285 254 202 0 chr11 134465702 134465816 -14317656 + L2 LINE L2 3172 3308 -5 628 224 145 47 chr11 134466331 134466545 -14316927 - MIR SINE MIR -16 246 12 480 298 70 13 chr11 134467505 134467663 -14315809 + MIR3 SINE MIR 36 202 -6 374 235 0 0 chr11 134468134 134468219 -14315253 - MIR SINE MIR 0 262 178 312 255 0 82 chr11 134468229 134468327 -14315145 + L1MC4 LINE L1 6614 6703 -1339 271 155 0 0 chr11 134468330 134468388 -14315084 + LTR66 LTR ERVL 395 452 -158 * 2923 147 65 18 chr11 134468383 134469059 -14314413 + MER21A LTR ERV1 103 931 0 22 35 0 0 chr11 134469304 134469333 -14314139 + AT_rich Low_complexity Low_complexity 1 29 0 1943 136 0 7 chr11 134469443 134469745 -14313727 + AluSx SINE Alu 1 300 -12 369 272 156 6 chr11 134469866 134470090 -14313382 + L1 LINE L1 4039 4292 -1854 2225 91 0 0 chr11 134470133 134470418 -14313054 + AluSq SINE Alu 1 285 -28 1667 236 47 16 chr11 134470527 134470951 -14312521 - LTR40b LTR ERVL -25 437 1 1989 129 0 26 chr11 134470982 134471293 -14312179 + AluSx SINE Alu 1 303 -9 1926 108 4 0 chr11 134471422 134471701 -14311771 + AluSp SINE Alu 1 280 -33 432 0 0 0 chr11 134471701 134471749 -14311723 + (CA)n Simple_repeat Simple_repeat 1 48 0 2002 127 3 25 chr11 134471757 134472073 -14311399 + AluSx SINE Alu 4 312 0 1940 111 0 17 chr11 134472082 134472389 -14311083 + AluSg SINE Alu 14 310 0 1135 241 66 85 chr11 134472560 134472821 -14310651 - MLT1D LTR MaLR 0 505 240 2159 97 0 0 chr11 134472821 134473110 -14310362 - AluSg SINE Alu -21 289 1 1135 241 66 85 chr11 134473110 134473280 -14310192 - MLT1D LTR MaLR -265 240 83 1919 146 0 10 chr11 134473280 134473588 -14309884 - AluSq SINE Alu -8 305 1 1135 241 66 85 chr11 134473588 134473670 -14309802 - MLT1D LTR MaLR -422 83 1 325 275 18 28 chr11 134473996 134474105 -14309367 + GA-rich Low_complexity Low_complexity 2 109 0 214 296 12 25 chr11 134474106 134474187 -14309285 + L3 LINE CR1 1365 1444 -133 2332 49 0 3 chr11 134475400 134475709 -14307763 - AluY SINE Alu 0 308 1 2097 122 0 0 chr11 134475986 134476282 -14307190 + AluSx SINE Alu 1 296 -16 189 0 0 0 chr11 134476282 134476303 -14307169 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 375 41 0 0 chr11 134476302 134476351 -14307121 + (CA)n Simple_repeat Simple_repeat 2 50 0 2115 125 0 3 chr11 134476361 134476673 -14306799 + AluSx SINE Alu 1 311 -1 1663 132 55 28 chr11 134476694 134476983 -14306489 + AluJb SINE Alu 1 297 -15 851 116 8 0 chr11 134476996 134477117 -14306355 + AluJb SINE Alu 4 125 -187 657 237 30 0 chr11 134477138 134477273 -14306199 + L1MC4a LINE L1 6674 6812 -996 540 290 28 41 chr11 134477306 134477623 -14305849 + L1MC4 LINE L1 7689 8001 -41 1677 169 13 7 chr11 134477725 134478033 -14305439 + AluSx SINE Alu 1 310 -2 1259 179 45 34 chr11 134478162 134478453 -14305019 - AluJb SINE Alu -13 299 6 338 246 174 36 chr11 134478457 134478595 -14304877 + L1MC5 LINE L1 7757 7913 -48 260 286 124 50 chr11 134478938 134479099 -14304373 + MIR SINE MIR 20 192 -70 21 57 0 0 chr11 134479191 134479226 -14304246 + AT_rich Low_complexity Low_complexity 1 35 0 219 69 0 0 chr11 134479707 134479736 -14303736 + (TG)n Simple_repeat Simple_repeat 2 30 0 2309 75 3 0 chr11 134480662 134480956 -14302516 + AluSp SINE Alu 4 298 -15 436 262 49 8 chr11 134480956 134481078 -14302394 + MIR SINE MIR 20 146 -62 1772 193 27 0 chr11 134481185 134481291 -14302181 + MER58B DNA MER1_type 1 103 -2317 2317 96 0 6 chr11 134481291 134481604 -14301868 + AluSx SINE Alu 1 311 -1 1772 193 27 0 chr11 134481604 134481829 -14301643 + MER58B DNA MER1_type 103 341 0 498 293 160 0 chr11 134481844 134481994 -14301478 - MER5A DNA MER1_type -7 182 9 239 258 11 79 chr11 134482445 134482534 -14300938 + L2 LINE L2 3231 3313 0 * 338 333 0 20 chr11 134482526 134482625 -14300847 - MIR3 SINE MIR -102 106 10 776 192 13 13 chr11 134483192 134483343 -14300129 + MLT1A2 LTR MaLR 1 151 -223 1685 137 0 65 chr11 134483343 134483636 -14299836 + AluSx SINE Alu 13 286 -26 427 134 0 0 chr11 134483659 134483726 -14299746 - AluSp/q SINE Alu -19 294 228 328 260 106 19 chr11 134483786 134483890 -14299582 - L2 LINE L2 -26 3246 3134 1878 171 49 0 chr11 134484086 134484414 -14299058 + MER2 DNA MER2_type 1 344 0 1593 136 10 68 chr11 134484704 134484873 -14298599 - AluJb SINE Alu -22 290 146 2025 110 3 7 chr11 134484873 134485164 -14298308 - AluSq SINE Alu -23 290 1 1593 136 10 68 chr11 134485164 134485302 -14298170 - AluJb SINE Alu -166 146 1 263 287 165 24 chr11 134485362 134485526 -14297946 + MIR SINE MIR 32 218 -44 224 283 172 10 chr11 134485795 134485894 -14297578 - MIR SINE MIR -66 142 28 341 209 149 68 chr11 134486276 134486393 -14297079 + MIR SINE MIR 28 161 -101 2193 109 0 0 chr11 134486393 134486697 -14296775 + AluSx SINE Alu 1 304 -8 341 209 149 68 chr11 134486697 134486727 -14296745 + MIR SINE MIR 161 187 -75 2270 77 0 3 chr11 134486741 134487041 -14296431 + AluY SINE Alu 1 299 -12 192 241 103 0 chr11 134487296 134487354 -14296118 + L2 LINE L2 3153 3216 -97 2284 43 0 43 chr11 134487755 134488055 -14295417 - AluY SINE Alu -24 287 1 233 271 79 64 chr11 134488719 134488796 -14294676 - L3 LINE CR1 -195 1382 1301 2006 114 7 20 chr11 134488796 134489094 -14294378 + AluSx SINE Alu 1 294 -18 233 271 79 64 chr11 134489094 134489156 -14294316 - L3 LINE CR1 -276 1301 1241 * 372 326 116 44 chr11 134489149 134489330 -14294142 + L2 LINE L2 3070 3263 -9 990 149 6 12 chr11 134490017 134490178 -14293294 - AluJo SINE Alu -152 160 1 1900 112 0 0 chr11 134490359 134490628 -14292844 + AluSx SINE Alu 1 269 -43 236 30 30 0 chr11 134490637 134490670 -14292802 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 443 305 53 7 chr11 134490808 134490959 -14292513 - MIR SINE MIR -8 254 97 294 115 0 0 chr11 134491221 134491273 -14292199 + (CA)n Simple_repeat Simple_repeat 2 53 0 1062 212 20 25 chr11 134491512 134491757 -14291715 + MIR SINE MIR 15 258 -4 1805 182 115 22 chr11 134491861 134492323 -14291149 + MLT1D LTR MaLR 1 505 0 218 348 98 0 chr11 134492731 134492823 -14290649 - MIR SINE MIR -157 105 5 2083 115 3 7 chr11 134493134 134493439 -14290033 + AluSq SINE Alu 1 304 -9 447 282 47 53 chr11 134493481 134493651 -14289821 + MIR3 SINE MIR 15 183 -25 2207 106 3 10 chr11 134494076 134494387 -14289085 + AluSx SINE Alu 1 309 -3 255 200 17 17 chr11 134494526 134494586 -14288886 + GA-rich Low_complexity Low_complexity 2 61 0 2362 74 0 6 chr11 134494705 134495017 -14288455 + AluSg SINE Alu 1 310 0 1468 159 0 55 chr11 134495928 134496218 -14287254 + AluJo SINE Alu 1 274 -38 1924 58 61 22 chr11 134496225 134496503 -14286969 + AluY SINE Alu 1 289 -22 206 325 12 48 chr11 134496891 134496974 -14286498 - MIR SINE MIR -82 126 47 1684 158 53 26 chr11 134496993 134497296 -14286176 + AluJb SINE Alu 1 311 -1 360 155 0 0 chr11 134497296 134497367 -14286105 + GA-rich Low_complexity Low_complexity 2 72 0 306 345 123 12 chr11 134497770 134497941 -14285531 + MIR3 SINE MIR 17 206 -2 267 268 85 78 chr11 134498394 134498422 -14285050 - MIR SINE MIR -14 248 222 2036 92 39 0 chr11 134498422 134498705 -14284767 - AluSx SINE Alu -18 294 1 267 268 85 78 chr11 134498705 134498829 -14284643 - MIR SINE MIR -40 222 95 1914 114 0 11 chr11 134499047 134499327 -14284145 + AluSx SINE Alu 9 285 -27 25 0 0 0 chr11 134499327 134499352 -14284120 + AT_rich Low_complexity Low_complexity 1 25 0 325 214 186 90 chr11 134499639 134499685 -14283787 + MER5A DNA MER1_type 30 70 -119 1761 142 0 21 chr11 134499685 134500000 -14283472 + AluJo SINE Alu 1 309 0 325 214 186 90 chr11 134500000 134500097 -14283375 + MER5A DNA MER1_type 70 188 -1 2026 121 10 0 chr11 134500263 134500569 -14282903 + AluSq SINE Alu 1 309 -4 580 317 40 5 chr11 134501327 134501526 -14281946 - MIR SINE MIR -1 261 56 896 195 71 19 chr11 134501693 134501903 -14281569 + MER58A DNA MER1_type 3 223 -1 345 325 336 14 chr11 134501974 134502266 -14281206 + L3 LINE CR1 1191 1576 -1 1000 121 0 0 chr11 134502339 134502488 -14280984 + AluSg/x SINE Alu 164 312 0 24 0 0 0 chr11 134502551 134502575 -14280897 + AT_rich Low_complexity Low_complexity 1 24 0 1017 256 90 44 chr11 134502698 134503109 -14280363 + LTR8A LTR ERV1 292 721 -6 279 158 0 0 chr11 134503113 134503151 -14280321 - Alu SINE Alu -264 38 1 3794 148 39 20 chr11 134503301 134503448 -14280024 + L1MA7 LINE L1 5541 5684 -607 1605 169 0 28 chr11 134503448 134503747 -14279725 + AluJo SINE Alu 2 293 -19 252 0 0 0 chr11 134503747 134503775 -14279697 + (CA)n Simple_repeat Simple_repeat 1 28 0 1605 169 0 28 chr11 134503775 134503794 -14279678 + AluJo SINE Alu 293 311 -1 3794 148 39 20 chr11 134503794 134504356 -14279116 + L1MA7 LINE L1 5684 6264 -27 2067 131 0 3 chr11 134504361 134504666 -14278806 + AluSx SINE Alu 2 305 -7 24 32 0 0 chr11 134504692 134504723 -14278749 + AT_rich Low_complexity Low_complexity 1 31 0 658 318 60 50 chr11 134504748 134505132 -14278340 + L1MC/D LINE L1 3553 3940 -2206 1953 135 10 0 chr11 134505132 134505429 -14278043 + AluSx SINE Alu 1 300 -12 236 266 168 9 chr11 134505610 134505723 -14277749 + L1P LINE L1 4099 4229 -1917 2225 91 0 0 chr11 134505817 134506102 -14277370 + AluSq SINE Alu 1 285 -28 1667 236 47 16 chr11 134506211 134506635 -14276837 - LTR40b LTR ERVL -25 437 1 2008 127 0 29 chr11 134506666 134506982 -14276490 + AluSx SINE Alu 1 307 -5 3963 179 39 33 chr11 134507123 134507841 -14275631 + L1MC2 LINE L1 5511 6236 -108 1715 184 3 3 chr11 134507841 134508151 -14275321 + AluJb SINE Alu 1 310 -2 3963 179 39 33 chr11 134508151 134508253 -14275219 + L1MC2 LINE L1 6236 6336 -8 713 326 134 37 chr11 134508260 134508325 -14275147 + L1MC/D LINE L1 4545 4602 -1544 2034 98 4 11 chr11 134508325 134508601 -14274871 + AluSx SINE Alu 1 274 -38 713 326 134 37 chr11 134508601 134509069 -14274403 + L1MC/D LINE L1 4602 5184 -962 28 29 0 0 chr11 134509069 134509104 -14274368 + AT_rich Low_complexity Low_complexity 1 35 0 713 326 134 37 chr11 134509104 134509233 -14274239 + L1MC/D LINE L1 5184 5299 -847 459 289 66 15 chr11 134509363 134509560 -14273912 + L1MC/D LINE L1 5406 5612 -2196 181 156 0 0 chr11 134509560 134509592 -14273880 + MIR SINE MIR 129 160 -102 2054 136 0 14 chr11 134511010 134511304 -14272168 - AluSx SINE Alu -22 290 1 349 257 114 19 chr11 134511304 134511409 -14272063 + L1MC/D LINE L1 5622 5736 -2072 1747 184 4 0 chr11 134511459 134511737 -14271735 + AluSx SINE Alu 1 279 -33 627 159 14 14 chr11 134511739 134511877 -14271595 + GA-rich Low_complexity Low_complexity 2 139 0 186 309 12 25 chr11 134512176 134512257 -14271215 - L2 LINE L2 -189 3083 3004 180 276 210 50 chr11 134512583 134512764 -14270708 - L2 LINE L2 -1 3312 3103 874 169 0 0 chr11 134513622 134513752 -14269720 - FLAM_C SINE Alu -3 130 1 4543 180 10 24 chr11 134515792 134516362 -14267110 + L1MB7 LINE L1 5254 5830 -354 1571 124 4 4 chr11 134516362 134516595 -14266877 - MER46A DNA MER2_type 0 236 4 4543 180 10 24 chr11 134516595 134516917 -14266555 + L1MB7 LINE L1 5830 6135 -49 1662 193 17 0 chr11 134516917 134517217 -14266255 + AluJb SINE Alu 1 305 -7 4543 180 10 24 chr11 134517217 134517255 -14266217 + L1MB7 LINE L1 6135 6172 -12 2401 100 0 3 chr11 134517330 134517640 -14265832 - AluSq SINE Alu -4 309 1 2385 89 10 0 chr11 134518540 134518844 -14264628 + AluSq SINE Alu 1 307 -6 1964 144 23 13 chr11 134518857 134519191 -14264281 + AluSx SINE Alu 5 341 0 314 304 65 0 chr11 134519220 134519358 -14264114 - LTR16B LTR ERVL -157 307 161 2249 99 0 31 chr11 134519758 134520081 -14263391 - AluSq SINE Alu 0 313 1 2324 119 3 0 chr11 134520593 134520905 -14262567 - AluSp SINE Alu 0 313 1 229 431 0 0 chr11 134521285 134521387 -14262085 - MER5A DNA MER1_type -37 152 51 1491 114 0 0 chr11 134521493 134521695 -14261777 - AluSq SINE Alu -111 202 1 1734 186 10 7 chr11 134521737 134522043 -14261429 + AluJo SINE Alu 1 307 -5 186 43 0 0 chr11 134522311 134522334 -14261138 + (CACCAT)n Simple_repeat Simple_repeat 4 26 0 447 297 130 5 chr11 134522369 134522554 -14260918 + MIR SINE MIR 2 209 -53 2171 121 0 0 chr11 134522625 134522937 -14260535 - AluSx SINE Alu 0 312 1 296 335 118 33 chr11 134523771 134523898 -14259574 - L3 LINE CR1 -60 1517 1402 966 101 0 36 chr11 134523898 134524036 -14259436 - FLAM_C SINE Alu 0 133 1 296 335 118 33 chr11 134524036 134524153 -14259319 - L3 LINE CR1 -175 1402 1252 996 207 0 0 chr11 134524183 134524357 -14259115 + FAM SINE Alu 2 175 0 2264 107 7 0 chr11 134524425 134524723 -14258749 - AluSp SINE Alu -13 300 1 479 309 50 33 chr11 134524740 134525147 -14258325 - MLT2E LTR ERVL -248 415 1 378 0 0 0 chr11 134525569 134525611 -14257861 + (TG)n Simple_repeat Simple_repeat 2 43 0 216 128 0 51 chr11 134525813 134525832 -14257640 + (GAAA)n Simple_repeat Simple_repeat 3 21 -18 2312 116 0 0 chr11 134525832 134526143 -14257329 + AluSx SINE Alu 1 311 -1 216 128 0 51 chr11 134526143 134526162 -14257310 + (GAAA)n Simple_repeat Simple_repeat 21 39 0 2023 130 13 13 chr11 134527152 134527459 -14256013 - AluSx SINE Alu -5 307 1 2223 67 3 97 chr11 134527951 134528292 -14255180 - AluSc SINE Alu 0 309 1 2144 120 0 0 chr11 134528401 134528707 -14254765 + AluSx SINE Alu 1 306 0 2316 105 3 0 chr11 134529560 134529856 -14253616 - AluSx SINE Alu -15 297 1 1012 133 124 19 chr11 134529930 134530140 -14253332 - L1MC1 LINE L1 0 6333 6102 2215 101 7 7 chr11 134530141 134530437 -14253035 - AluSx SINE Alu -13 299 4 432 0 0 0 chr11 134530445 134530493 -14252979 + (TG)n Simple_repeat Simple_repeat 1 48 0 2056 108 4 0 chr11 134530493 134530772 -14252700 - AluSp SINE Alu -33 280 1 806 197 0 0 chr11 134530792 134530919 -14252553 - FLAM_C SINE Alu -16 127 1 695 144 0 79 chr11 134530948 134531087 -14252385 + FLAM_C SINE Alu 3 130 -3 1481 171 85 20 chr11 134531110 134531403 -14252069 + AluJo SINE Alu 1 312 0 2333 122 0 0 chr11 134531438 134531750 -14251722 + AluSx SINE Alu 1 312 0 275 293 0 49 chr11 134531867 134531949 -14251523 - MIR3 SINE MIR -27 181 104 2189 111 0 19 chr11 134532115 134532430 -14251042 - AluSg1 SINE Alu 0 309 1 1667 163 11 32 chr11 134532430 134532713 -14250759 - AluJb SINE Alu -15 297 21 2283 108 0 0 chr11 134533113 134533408 -14250064 - AluSc SINE Alu -14 295 1 764 247 98 0 chr11 134533889 134534083 -14249389 + MIR SINE MIR 50 262 0 220 242 100 50 chr11 134534663 134534783 -14248689 - MIR3 SINE MIR -70 138 13 * 658 238 79 20 chr11 134534717 134534919 -14248553 + MIR SINE MIR 49 262 0 247 322 154 13 chr11 134535157 134535306 -14248166 - L3 LINE CR1 -98 1479 1310 253 365 0 0 chr11 134535306 134535380 -14248092 + C-rich Low_complexity Low_complexity 2 75 0 1989 119 29 0 chr11 134537529 134537806 -14245666 - AluSx SINE Alu -7 305 21 2109 125 0 0 chr11 134538154 134538433 -14245039 + AluSx SINE Alu 24 302 -10 897 246 69 9 chr11 134538710 134538942 -14244530 - MIR SINE MIR -2 260 15 333 228 0 13 chr11 134538960 134539039 -14244433 + MIR SINE MIR 180 257 -5 1823 198 104 50 chr11 134539040 134539519 -14243953 - MLT1D LTR MaLR 0 505 1 23 0 0 0 chr11 134540982 134541005 -14242467 + AT_rich Low_complexity Low_complexity 1 23 0 300 243 61 111 chr11 134541876 134542076 -14241396 - MIR SINE MIR -41 221 33 201 39 0 0 chr11 134542097 134542123 -14241349 + (A)n Simple_repeat Simple_repeat 1 26 0 2278 120 3 3 chr11 134542136 134542444 -14241028 - AluSq SINE Alu -5 308 1 794 227 112 55 chr11 134542470 134542654 -14240818 - L1ME1 LINE L1 -5 6161 5989 2457 76 10 13 chr11 134542654 134542968 -14240504 - AluSp SINE Alu 0 313 1 794 227 112 55 chr11 134542968 134543147 -14240325 - L1ME1 LINE L1 -177 5989 5779 2253 115 3 3 chr11 134543210 134543514 -14239958 - AluSx SINE Alu -8 304 1 644 291 30 20 chr11 134544007 134544210 -14239262 + MIR SINE MIR 46 250 -12 485 130 0 0 chr11 134545157 134545226 -14238246 - AluS SINE Alu -22 290 222 2471 84 0 0 chr11 134545543 134545870 -14237602 - AluSx SINE Alu 0 327 1 472 208 139 0 chr11 134546376 134546477 -14236995 + FLAM_C SINE Alu 3 117 -16 2370 103 3 0 chr11 134546570 134546871 -14236601 + AluSx SINE Alu 1 302 -10 2313 104 7 3 chr11 134546871 134547178 -14236294 + AluSg SINE Alu 1 308 -2 2251 103 6 13 chr11 134547196 134547507 -14235965 + AluSg SINE Alu 1 309 -1 623 253 20 60 chr11 134547512 134547761 -14235711 - L1MC5 LINE L1 -47 7914 7676 2022 120 10 47 chr11 134547761 134548062 -14235410 - AluSx SINE Alu -22 290 1 234 250 13 26 chr11 134548488 134548564 -14234908 + CT-rich Low_complexity Low_complexity 2 76 0 780 210 83 0 chr11 134548586 134548743 -14234729 - AluSg/x SINE Alu -10 300 131 216 0 0 0 chr11 134548743 134548767 -14234705 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2152 117 4 0 chr11 134548768 134549049 -14234423 - AluSq SINE Alu -31 282 1 228 235 0 0 chr11 134549998 134550049 -14233423 + (TGAA)n Simple_repeat Simple_repeat 3 53 0 25 0 0 0 chr11 134550125 134550150 -14233322 + AT_rich Low_complexity Low_complexity 1 25 0 788 138 14 58 chr11 134550163 134550301 -14233171 + FLAM_C SINE Alu 2 133 0 721 165 0 9 chr11 134550306 134550421 -14233051 - FLAM_C SINE Alu -18 115 2 270 238 93 40 chr11 134550592 134550743 -14232729 + L2 LINE L2 3008 3166 -147 268 322 57 70 chr11 134550764 134550900 -14232572 - MIR SINE MIR -29 233 100 2546 68 0 10 chr11 134550900 134551211 -14232261 - AluSp SINE Alu -4 309 2 268 322 57 70 chr11 134551211 134551304 -14232168 - MIR SINE MIR -162 100 7 21 0 0 0 chr11 134551344 134551365 -14232107 + AT_rich Low_complexity Low_complexity 1 21 0 1561 178 16 67 chr11 134551395 134551709 -14231763 - AluJb SINE Alu -14 298 1 2466 76 0 0 chr11 134551883 134552187 -14231285 + AluY SINE Alu 1 304 -7 456 254 99 7 chr11 134552387 134552529 -14230943 + MIR SINE MIR 52 206 -56 2423 109 0 0 chr11 134552560 134552871 -14230601 - AluSx SINE Alu -1 311 1 375 257 27 93 chr11 134553021 134553204 -14230268 - MARNA DNA Mariner -3 583 413 1460 115 5 0 chr11 134554101 134554292 -14229180 + AluSx SINE Alu 1 192 -120 926 85 0 0 chr11 134554392 134554510 -14228962 + AluSx SINE Alu 195 312 0 232 258 75 43 chr11 134554868 134554961 -14228511 + MIR3 SINE MIR 78 173 -35 483 178 0 0 chr11 134555118 134555219 -14228253 + CT-rich Low_complexity Low_complexity 4 104 0 22 0 0 0 chr11 134555596 134555618 -14227854 + AT_rich Low_complexity Low_complexity 1 22 0 2230 91 50 3 chr11 134555838 134556136 -14227336 + AluSq SINE Alu 1 312 -1 225 0 0 0 chr11 134556236 134556261 -14227211 + (T)n Simple_repeat Simple_repeat 1 25 0 624 224 45 0 chr11 134556508 134556664 -14226808 + MER5B DNA MER1_type 16 178 0 289 295 115 36 chr11 134557528 134557667 -14225805 + L2 LINE L2 3123 3272 0 270 244 62 81 chr11 134557663 134557732 -14225740 + MIR SINE MIR 56 125 -137 * 2331 94 0 3 chr11 134557732 134558030 -14225442 - AluSq SINE Alu -16 297 1 270 244 62 81 chr11 134558030 134558120 -14225352 + MIR SINE MIR 125 212 -50 2338 80 35 0 chr11 134558465 134558753 -14224719 + AluSx SINE Alu 1 298 -14 1030 228 47 4 chr11 134559338 134559592 -14223880 - L1ME1 LINE L1 -325 5841 5577 653 194 23 0 chr11 134559596 134559725 -14223747 + AluJo SINE Alu 5 136 -176 1160 223 45 65 chr11 134559740 134559902 -14223570 - L1ME1 LINE L1 -586 5580 5416 2324 103 0 0 chr11 134559902 134560202 -14223270 - AluSx SINE Alu -4 308 9 1160 223 45 65 chr11 134560202 134560457 -14223015 - L1ME1 LINE L1 -750 5416 5170 972 166 6 6 chr11 134560476 134560639 -14222833 + AluJo SINE Alu 137 299 -3 1080 209 80 44 chr11 134560802 134560884 -14222588 - MER58 DNA MER1_type -83 258 180 2336 83 0 13 chr11 134560884 134561049 -14222423 - AluY SINE Alu -14 297 136 2478 71 0 0 chr11 134561049 134561345 -14222127 - AluY SINE Alu -15 296 1 2336 83 0 13 chr11 134561345 134561480 -14221992 - AluY SINE Alu -175 136 1 1080 209 80 44 chr11 134561480 134561646 -14221826 - MER58 DNA MER1_type -161 180 1 407 113 0 16 chr11 134561888 134561950 -14221522 + MLT2B3 LTR ERVL 454 514 -40 2404 79 7 3 chr11 134562058 134562362 -14221110 + AluSp SINE Alu 1 305 -8 622 197 17 0 chr11 134562782 134562899 -14220573 + Ricksha DNA DNA 1 119 -3127 6545 139 12 2 chr11 134562903 134563887 -14219585 + Ricksha DNA DNA 243 1236 -2010 432 243 99 45 chr11 134563913 134564115 -14219357 + HsTC2 DNA Tc2 1536 1748 -150 588 230 0 0 chr11 134564188 134564301 -14219171 + AluJb SINE Alu 5 117 -195 35 54 0 0 chr11 134564301 134564357 -14219115 + AT_rich Low_complexity Low_complexity 1 56 0 414 0 0 0 chr11 134564789 134564835 -14218637 + (TG)n Simple_repeat Simple_repeat 2 47 0 207 139 0 0 chr11 134564905 134564941 -14218531 + (TG)n Simple_repeat Simple_repeat 2 37 0 286 158 0 26 chr11 134565322 134565398 -14218074 + (TA)n Simple_repeat Simple_repeat 1 74 0 2230 113 3 3 chr11 134566079 134566381 -14217091 - AluSx SINE Alu -10 302 1 2410 112 0 0 chr11 134566737 134567049 -14216423 - AluSx SINE Alu 0 312 1 1787 116 0 41 chr11 134567787 134568054 -14215418 - AluSx SINE Alu -8 304 49 1463 143 0 0 chr11 134568054 134568263 -14215209 - AluSq SINE Alu -104 209 1 3139 160 12 54 chr11 134568372 134568587 -14214885 - L1PB4 LINE L1 -3 6153 5931 1934 160 3 3 chr11 134568587 134568893 -14214579 - AluJb SINE Alu -6 306 1 3139 160 12 54 chr11 134568893 134569024 -14214448 - L1PB4 LINE L1 -225 5931 5796 2402 72 0 23 chr11 134569024 134569331 -14214141 - AluY SINE Alu -9 302 3 3139 160 12 54 chr11 134569331 134569651 -14213821 - L1PB4 LINE L1 -360 5796 5514 5739 146 9 54 chr11 134569713 134570691 -14212781 - L1MA5A LINE L1 -10 6287 5373 802 98 0 0 chr11 134570691 134570803 -14212669 + L1PB1 LINE L1 6039 6150 -1 5739 146 9 54 chr11 134570803 134571057 -14212415 - L1MA5A LINE L1 -924 5373 5109 31 0 0 0 chr11 134571092 134571123 -14212349 + AT_rich Low_complexity Low_complexity 1 31 0 336 144 41 72 chr11 134571123 134571220 -14212252 - L1MB3 LINE L1 -3 6180 6087 1706 223 32 11 chr11 134571224 134571893 -14211579 - L1MA4 LINE L1 -214 6579 3726 2145 141 0 0 chr11 134571899 134572204 -14211268 - AluSx SINE Alu -7 305 1 2687 160 74 4 chr11 134572241 134572716 -14210756 - L1MA4 LINE L1 -6224 565 58 295 149 21 0 chr11 134572716 134572763 -14210709 - Alu SINE Alu -251 48 1 487 167 10 0 chr11 134572763 134572865 -14210607 - L1 LINE L1 -3060 3728 3626 209 313 61 40 chr11 134572993 134573092 -14210380 - L3 LINE CR1 -1183 394 294 949 102 14 14 chr11 134573106 134573253 -14210219 - L1PB2 LINE L1 0 6151 6005 2300 107 3 3 chr11 134573955 134574265 -14209207 + AluSp SINE Alu 1 310 -3 379 352 5 33 chr11 134574384 134574604 -14208868 + MIR SINE MIR 5 216 -46 557 184 203 57 chr11 134574897 134574989 -14208483 + MER5A DNA MER1_type 6 83 -106 2074 115 35 0 chr11 134574989 134575275 -14208197 - AluSx SINE Alu -16 296 1 557 184 203 57 chr11 134575275 134575340 -14208132 + MER5A DNA MER1_type 83 186 -3 871 136 163 38 chr11 134575422 134575606 -14207866 + L1PA16 LINE L1 5940 6146 -20 34 24 0 0 chr11 134575683 134575724 -14207748 + AT_rich Low_complexity Low_complexity 1 41 0 1335 111 30 21 chr11 134575724 134575958 -14207514 - L1MA6 LINE L1 0 6300 6065 450 140 127 7 chr11 134575965 134576110 -14207362 - L1MA6 LINE L1 -155 6157 6012 616 148 0 0 chr11 134576110 134576211 -14207261 - AluSp/q SINE Alu -5 308 208 582 144 0 39 chr11 134576216 134576320 -14207152 - AluSp/q SINE Alu -8 305 206 637 41 0 0 chr11 134576338 134576411 -14207061 - tRNA-Lys-AAA tRNA tRNA -3 73 1 3677 138 64 48 chr11 134576411 134576665 -14206807 - L1MA6 LINE L1 -265 6035 5786 2296 109 3 0 chr11 134576665 134576967 -14206505 - AluSp SINE Alu -10 303 1 3677 138 64 48 chr11 134576967 134577108 -14206364 - L1MA6 LINE L1 -514 5786 5649 2369 109 0 6 chr11 134577108 134577420 -14206052 + AluSg SINE Alu 1 310 0 3677 138 64 48 chr11 134577420 134577728 -14205744 - L1MA6 LINE L1 -651 5649 5320 1423 196 41 0 chr11 134577730 134577996 -14205476 - AluJb SINE Alu -22 290 14 947 209 55 41 chr11 134578003 134578295 -14205177 - L1MA6 LINE L1 -816 5330 5035 1939 99 0 8 chr11 134578295 134578548 -14204924 - AluSx SINE Alu -4 308 58 4034 80 156 107 chr11 134578551 134579338 -14204134 - LTR12 LTR ERV1 0 826 1 457 246 34 49 chr11 134579418 134579682 -14203790 - pTR5 LTR ERV1 -1410 1028 769 375 206 0 0 chr11 134579699 134579774 -14203698 - AluJ/FLAM SINE Alu -244 58 1 275 219 78 0 chr11 134579809 134579873 -14203599 + AluJ/FRAM SINE Alu 232 300 -2 1375 258 35 5 chr11 134579880 134580279 -14203193 + L1PB1 LINE L1 139 549 -6314 2149 202 24 7 chr11 134580307 134580733 -14202739 + L1PB1 LINE L1 605 1037 -5826 3633 53 0 2 chr11 134580737 134581186 -14202286 - LTR7 LTR ERV1 -2 448 1 29824 167 33 28 chr11 134581186 134589312 -14194160 - HERVH LTR ERV1 0 7713 1 3253 60 2 104 chr11 134589314 134589813 -14193659 - LTR7 LTR ERV1 -2 448 1 14615 201 23 11 chr11 134589828 134594800 -14188672 + L1PB1 LINE L1 1093 6319 -548 2303 116 0 3 chr11 134594800 134595110 -14188362 + AluSg SINE Alu 1 309 -1 14615 201 23 11 chr11 134595110 134595302 -14188170 + L1PB1 LINE L1 6319 6507 -360 2351 120 5 16 chr11 134595360 134595727 -14187745 + L1PB1 LINE L1 6497 6859 -8 2848 178 38 14 chr11 134595759 134596398 -14187074 - L1 LINE L1 -1137 5651 4998 * 4889 227 43 36 chr11 134596376 134597673 -14185799 - L1 LINE L1 -3318 3470 2183 2218 96 41 0 chr11 134597673 134597964 -14185508 - AluY SINE Alu -8 303 1 4889 227 43 36 chr11 134597964 134599063 -14184409 - L1 LINE L1 -4605 2183 1093 2528 140 36 7 chr11 134599063 134599477 -14183995 - MSTA LTR MaLR 0 428 3 9391 161 36 6 chr11 134599480 134601083 -14182389 - MSTA-int LTR MaLR -1 1650 1 2556 137 49 2 chr11 134601083 134601492 -14181980 - MSTA LTR MaLR 0 428 1 4889 227 43 36 chr11 134601492 134602432 -14181040 - L1 LINE L1 -5695 1093 5 313 239 239 0 chr11 134602905 134603018 -14180454 + MER5A DNA MER1_type 44 183 -6 546 288 19 12 chr11 134603379 134603539 -14179933 - MIR SINE MIR -90 172 12 596 227 37 125 chr11 134603824 134603982 -14179490 - L1MC4a LINE L1 -1820 5988 5818 2198 115 6 13 chr11 134603982 134604295 -14179177 - AluSx SINE Alu 0 312 2 596 227 37 125 chr11 134604295 134604519 -14178953 - L1MC4a LINE L1 -1990 5818 5640 2077 145 0 0 chr11 134604656 134604960 -14178512 - AluSx SINE Alu -8 304 1 949 226 93 0 chr11 134605059 134605263 -14178209 + MER58A DNA MER1_type 1 223 -1 638 265 72 109 chr11 134605371 134605899 -14177573 + MLT1G LTR MaLR 2 552 -43 3044 107 0 5 chr11 134605899 134606338 -14177134 - L1PA13 LINE L1 -4 6159 5723 412 298 66 16 chr11 134606419 134606753 -14176719 - L1 LINE L1 -2143 4003 3654 1987 156 0 0 chr11 134606771 134607077 -14176395 - AluSx SINE Alu 0 306 1 530 252 14 0 chr11 134607083 134607226 -14176246 - MER69A DNA AcHobo -13 164 20 1594 201 10 3 chr11 134607275 134607663 -14175809 - L1P LINE L1 -2890 3256 2866 5853 100 18 18 chr11 134607664 134609541 -14173931 + L1PA13 LINE L1 4252 6159 -4 205 288 137 84 chr11 134609700 134609926 -14173546 - L2 LINE L2 -5 3267 3030 318 292 62 48 chr11 134611234 134611443 -14172029 - MIR SINE MIR -31 231 20 23 0 0 0 chr11 134612978 134613001 -14170471 + AT_rich Low_complexity Low_complexity 1 23 0 342 292 49 107 chr11 134613183 134613426 -14170046 + L2 LINE L2 2967 3195 -77 2128 118 3 3 chr11 134613559 134613855 -14169617 - AluSx SINE Alu -16 296 1 363 317 6 43 chr11 134613892 134614053 -14169419 - MIR SINE MIR -42 220 66 254 320 80 48 chr11 134614184 134614309 -14169163 - L2 LINE L2 -1 3271 3143 198 302 336 9 chr11 134615076 134615391 -14168081 + L2 LINE L2 2076 2493 -821 1035 301 66 27 chr11 134615624 134616062 -14167410 + L2 LINE L2 2182 2636 -678 1956 145 17 10 chr11 134616076 134616373 -14167099 - AluJb SINE Alu -13 299 1 1214 186 131 20 chr11 134616433 134616685 -14166787 - AluJo SINE Alu -32 280 1 2178 137 0 6 chr11 134616808 134617122 -14166350 - AluSx SINE Alu 0 312 1 247 295 32 42 chr11 134617270 134617445 -14166027 + L2 LINE L2 2989 3211 -61 1753 203 62 20 chr11 134617504 134617943 -14165529 - LTR2B LTR ERV1 0 490 34 281 370 42 0 chr11 134617972 134618091 -14165381 + L2 LINE L2 2634 2757 -557 445 261 168 19 chr11 134618097 134618282 -14165190 + MLT1K LTR MaLR 85 279 -323 326 286 34 28 chr11 134618311 134618489 -14164983 + MLT1K LTR MaLR 383 561 -27 312 230 138 0 chr11 134618498 134618585 -14164887 - L2 LINE L2 0 3272 3174 2047 125 64 19 chr11 134618586 134618945 -14164527 + THE1C LTR MaLR 1 375 0 268 368 30 46 chr11 134619318 134619622 -14163850 + L2 LINE L2 1051 1349 -1965 206 348 34 11 chr11 134619647 134619736 -14163736 - L2 LINE L2 0 3272 3182 214 290 48 0 chr11 134620024 134620086 -14163386 - L2 LINE L2 -4 3268 3204 801 245 113 43 chr11 134620140 134620467 -14163005 + LTR16C LTR ERVL 52 401 -90 199 369 41 26 chr11 134620523 134620718 -14162754 + L2 LINE L2 1051 1248 -2066 228 249 68 140 chr11 134620787 134621008 -14162464 - L2 LINE L2 -65 3248 3044 584 338 186 40 chr11 134621075 134622163 -14161309 + L2 LINE L2 1983 3272 0 194 304 101 0 chr11 134622721 134622800 -14160672 - MIR SINE MIR -14 248 162 * 483 343 63 48 chr11 134622796 134623175 -14160297 - L2 LINE L2 -358 2956 2572 471 309 37 6 chr11 134623222 134623384 -14160088 + MIR SINE MIR 37 203 -59 1350 209 5 94 chr11 134623384 134623713 -14159759 + MLT1D LTR MaLR 1 283 -222 2139 153 10 25 chr11 134623713 134624111 -14159361 + L1MA3 LINE L1 5914 6305 0 1350 209 5 94 chr11 134624111 134624216 -14159256 + MLT1D LTR MaLR 283 396 -109 489 202 0 0 chr11 134624375 134624474 -14158998 + MLT1D LTR MaLR 528 626 0 372 286 42 0 chr11 134624614 134624733 -14158739 - L2 LINE L2 -955 2359 2236 286 119 0 17 chr11 134625125 134625184 -14158288 - L1MA6 LINE L1 -2 6298 6241 * 705 143 38 0 chr11 134625176 134625309 -14158163 - L1MA5 LINE L1 -126 6174 6037 1757 19 0 0 chr11 134625422 134625637 -14157835 - L1PA2 LINE L1 -101 6054 5840 352 179 0 111 chr11 134625635 134625752 -14157720 - L1MA5 LINE L1 -257 6043 5940 * 4033 118 52 65 chr11 134625959 134626755 -14156717 + LTR1 LTR ERV1 1 785 0 455 319 94 0 chr11 134627129 134627320 -14156152 - MIR SINE MIR -1 261 53 207 182 45 0 chr11 134627498 134627542 -14155930 - L2 LINE L2 0 3313 3268 2194 126 3 0 chr11 134628211 134628512 -14154960 - AluSx SINE Alu -10 302 1 1612 161 11 4 chr11 134629022 134629282 -14154190 - AluJo SINE Alu -28 284 23 314 333 43 7 chr11 134629440 134629578 -14153894 + L2 LINE L2 3171 3313 0 1021 192 11 0 chr11 134629713 134629863 -14153609 + AluJb SINE Alu 129 283 -29 402 39 0 0 chr11 134629863 134629915 -14153557 + (CA)n Simple_repeat Simple_repeat 2 53 0 1021 192 11 0 chr11 134629915 134629946 -14153526 + AluJb SINE Alu 283 312 0 216 318 71 65 chr11 134630042 134630212 -14153260 - L2 LINE L2 -436 2878 2708 315 0 0 0 chr11 134630254 134630289 -14153183 + (T)n Simple_repeat Simple_repeat 1 35 0 200 375 39 0 chr11 134631620 134631724 -14151748 - MIR SINE MIR -44 218 111 344 288 181 19 chr11 134631944 134632104 -14151368 - MIR SINE MIR -45 217 32 216 244 83 59 chr11 134632212 134632300 -14151172 - MIR3 SINE MIR -51 157 68 585 131 0 0 chr11 134632357 134632456 -14151016 + MER53 DNA DNA 91 189 0 24 53 0 0 chr11 134632980 134633018 -14150454 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr11 134633063 134633084 -14150388 + AT_rich Low_complexity Low_complexity 1 21 0 2902 194 42 81 chr11 134633295 134633703 -14149769 + L1MA10 LINE L1 5435 5857 -477 2040 157 21 0 chr11 134633703 134634040 -14149432 - MER7A DNA MER2_type -1 345 4 2902 194 42 81 chr11 134634040 134634410 -14149062 + L1MA10 LINE L1 5857 6174 -160 279 0 0 0 chr11 134634410 134634441 -14149031 + (CA)n Simple_repeat Simple_repeat 1 31 0 2902 194 42 81 chr11 134634441 134634587 -14148885 + L1MA10 LINE L1 6174 6324 -10 218 355 101 26 chr11 134634747 134634760 -14148712 - L2 LINE L2 0 3272 3261 2301 65 0 14 chr11 134634760 134635054 -14148418 - AluY SINE Alu -21 290 1 218 355 101 26 chr11 134635054 134635229 -14148243 - L2 LINE L2 -11 3261 3070 378 151 12 23 chr11 134635229 134635315 -14148157 + L1M3 LINE L1 5574 5658 -513 426 276 112 44 chr11 134636338 134636588 -14146884 - MLT1J2 LTR MaLR -1 449 183 228 158 0 0 chr11 134636579 134636617 -14146855 - MLT1I LTR MaLR -259 150 113 * 256 304 42 68 chr11 134636740 134636931 -14146541 + L3 LINE CR1 1079 1264 -313 576 369 163 17 chr11 134636934 134637933 -14145539 + L2 LINE L2 2109 3262 -10 346 333 157 40 chr11 134637936 134638185 -14145287 + L3 LINE CR1 1265 1542 -35 23 33 0 0 chr11 134638235 134638265 -14145207 + AT_rich Low_complexity Low_complexity 1 30 0 1466 205 3 56 chr11 134638929 134639231 -14144241 - AluJo SINE Alu -5 307 22 4453 63 0 5 chr11 134639955 134640530 -14142942 + L1PA8 LINE L1 5595 6166 -6 304 93 19 0 chr11 134640530 134640579 -14142893 + L1MB4 LINE L1 6126 6180 0 2225 131 37 0 chr11 134640677 134641028 -14142444 + THE1B LTR MaLR 1 364 0 2336 92 13 0 chr11 134641293 134641597 -14141875 - AluSg SINE Alu -2 308 1 409 208 0 0 chr11 134641930 134642002 -14141470 + L2 LINE L2 3201 3272 0 209 330 0 78 chr11 134642640 134642755 -14140717 - L3 LINE CR1 -1 1576 1471 704 219 156 0 chr11 134642993 134643153 -14140319 - MER5A DNA MER1_type -1 188 4 25 65 0 0 chr11 134643325 134643371 -14140101 + AT_rich Low_complexity Low_complexity 1 46 0 30 0 0 0 chr11 134643559 134643589 -14139883 + AT_rich Low_complexity Low_complexity 1 30 0 1828 158 25 3 chr11 134643855 134644140 -14139332 - AluSx SINE Alu -21 291 1 195 324 144 0 chr11 134644193 134644304 -14139168 + L2 LINE L2 3187 3313 0 259 218 25 39 chr11 134645889 134646008 -14137464 + MER5A DNA MER1_type 9 189 0 196 269 6 6 chr11 134646308 134646468 -14137004 + (TAA)n Simple_repeat Simple_repeat 2 161 0 301 240 70 35 chr11 134646597 134646768 -14136704 - L1MEc LINE L1 -4812 1584 1408 826 283 83 29 chr11 134646786 134647119 -14136353 - L1MEc LINE L1 -5067 1329 1016 865 226 103 0 chr11 134647119 134647314 -14136158 + MER58C DNA MER1_type 1 215 0 826 283 83 29 chr11 134647314 134647606 -14135866 - L1MEc LINE L1 -5380 1016 670 567 337 38 34 chr11 134647718 134648187 -14135285 - L1MEc LINE L1 -5883 513 43 572 304 109 5 chr11 134648188 134648408 -14135064 + MIR SINE MIR 20 262 0 618 230 204 5 chr11 134649120 134649311 -14134161 + MIR SINE MIR 21 249 -13 591 246 293 23 chr11 134649499 134650073 -14133399 - LTR50 LTR ERVL -29 766 38 16967 157 25 9 chr11 134650089 134652491 -14130981 - L1MA2 LINE L1 0 7723 5361 2738 108 37 7 chr11 134652491 134652926 -14130546 - L1MA2 LINE L1 -17 6287 5840 16967 157 25 9 chr11 134652926 134657285 -14126187 - L1MA2 LINE L1 -2362 5361 852 300 163 0 0 chr11 134657285 134657334 -14126138 - LTR50 LTR ERVL -746 49 1 434 289 97 64 chr11 134657492 134657865 -14125607 - MLT1K LTR MaLR 0 588 204 329 205 0 12 chr11 134658213 134658296 -14125176 + CT-rich Low_complexity Low_complexity 2 83 0 7941 14 0 1 chr11 134658303 134659983 -14123489 - L1HS LINE L1 0 6155 4477 1570 183 7 51 chr11 134660378 134660700 -14122772 - AluSx SINE Alu 0 309 1 499 172 8 62 chr11 134660776 134660904 -14122568 - MLT2C1 LTR ERVL -1 396 276 360 246 261 0 chr11 134661519 134661657 -14121815 - MER5B DNA MER1_type -4 174 1 245 230 14 27 chr11 134661879 134661953 -14121519 + (CATATA)n Simple_repeat Simple_repeat 5 77 0 926 198 64 134 chr11 134662766 134662879 -14120593 - MER63 DNA MER1_type 0 1060 941 2108 125 0 3 chr11 134662879 134663183 -14120289 + AluSq SINE Alu 1 303 -10 926 198 64 134 chr11 134663183 134663226 -14120246 - MER63 DNA MER1_type -119 941 897 1200 183 0 17 chr11 134663226 134663456 -14120016 - L1PA16 LINE L1 -2 6164 5939 926 198 64 134 chr11 134663456 134663656 -14119816 - MER63 DNA MER1_type -163 897 728 411 277 24 12 chr11 134663927 134664093 -14119379 - MER63 DNA MER1_type -702 228 61 1379 172 8 0 chr11 134664098 134664342 -14119130 + L1PA16 LINE L1 5912 6157 -9 230 172 141 16 chr11 134664704 134664768 -14118704 - MER63 DNA MER1_type -989 72 1 476 354 102 5 chr11 134665974 134666189 -14117283 - MIR SINE MIR -26 236 1 284 285 80 44 chr11 134666189 134666326 -14117146 + MIR SINE MIR 65 206 -56 200 309 0 0 chr11 134666584 134666639 -14116833 + MIR SINE MIR 66 120 -142 439 307 73 13 chr11 134666777 134666927 -14116545 - MIR3 SINE MIR -13 195 37 25 0 0 0 chr11 134667095 134667120 -14116352 + AT_rich Low_complexity Low_complexity 1 25 0 188 320 185 40 chr11 134667519 134668037 -14115435 - L2 LINE L2 -456 2858 2266 550 234 81 36 chr11 134668344 134668572 -14114900 - L1ME3 LINE L1 -67 6095 5863 14295 195 39 34 chr11 134668729 134675632 -14107840 - L1MA4A LINE L1 -20 6985 1 2675 248 54 53 chr11 134675633 134676913 -14106559 - L1MEc LINE L1 -4180 2216 936 448 209 22 15 chr11 134676916 134677050 -14106422 + (TA)n Simple_repeat Simple_repeat 2 136 0 237 166 39 66 chr11 134676983 134677164 -14106308 + (TATAA)n Simple_repeat Simple_repeat 1 176 0 * 195 80 110 18 chr11 134677170 134677333 -14106139 + (TA)n Simple_repeat Simple_repeat 1 178 0 1570 294 75 34 chr11 134677361 134677510 -14105962 - L1MEc LINE L1 -5437 959 818 2166 178 55 13 chr11 134677510 134677981 -14105491 - L1MB2 LINE L1 -2 6169 5679 1570 294 75 34 chr11 134677981 134678599 -14104873 - L1MEc LINE L1 -5578 818 160 390 254 46 8 chr11 134678660 134678790 -14104682 - L1ME3A LINE L1 -264 5906 5772 2745 132 34 30 chr11 134678804 134679055 -14104417 - L1MA4 LINE L1 -1 6299 6050 823 216 0 23 chr11 134679055 134679226 -14104246 - FAM SINE Alu -8 167 1 2745 132 34 30 chr11 134679226 134679503 -14103969 - L1MA4 LINE L1 -250 6050 5769 1068 88 11 28 chr11 134679503 134679527 -14103945 + (TTTC)n Simple_repeat Simple_repeat 1 201 0 1068 88 11 28 chr11 134679527 134679708 -14103764 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 1674 159 22 41 chr11 134679815 134680130 -14103342 - AluJo SINE Alu -3 309 1 2868 164 14 14 chr11 134680135 134680984 -14102488 - L1MA4 LINE L1 -524 5776 4922 * 3594 167 20 0 chr11 134680975 134681668 -14101804 - L1MA4 LINE L1 -1673 4473 3767 389 263 9 9 chr11 134681670 134681810 -14101662 - L1ME3A LINE L1 -391 5771 5643 461 300 100 52 chr11 134682116 134682346 -14101126 + MIR SINE MIR 1 241 -21 185 330 9 28 chr11 134682798 134682904 -14100568 + L2 LINE L2 2943 3046 -226 3340 220 69 17 chr11 134683504 134683942 -14099530 - L1ME1 LINE L1 -4 6162 5748 2408 81 0 0 chr11 134683942 134684237 -14099235 - AluSx SINE Alu -17 295 1 3340 220 69 17 chr11 134684237 134684465 -14099007 - L1ME1 LINE L1 -418 5748 5533 1955 118 11 0 chr11 134684465 134684789 -14098683 + AluSx SINE Alu 1 327 0 3340 220 69 17 chr11 134684789 134685212 -14098260 - L1ME1 LINE L1 -633 5533 5019 28 48 0 0 chr11 134685212 134685254 -14098218 + AT_rich Low_complexity Low_complexity 1 42 0 2078 63 30 43 chr11 134685417 134685717 -14097755 - AluY SINE Alu -15 296 1 2335 234 52 20 chr11 134685730 134686427 -14097045 - L1ME1 LINE L1 -1128 5018 4300 2259 204 15 11 chr11 134686428 134686884 -14096588 - MLT1C LTR MaLR -9 458 1 395 217 11 11 chr11 134686884 134686976 -14096496 - L1ME1 LINE L1 -1840 4306 4215 1371 207 52 8 chr11 134687111 134687478 -14095994 - L1ME3A LINE L1 -745 5401 5019 21 36 0 0 chr11 134687491 134687519 -14095953 + AT_rich Low_complexity Low_complexity 1 28 0 682 236 12 0 chr11 134687748 134687913 -14095559 + MER96B DNA MER1_type? 9 175 -242 2999 53 3 5 chr11 134688165 134688543 -14094929 - L1PA6 LINE L1 0 6154 5778 3255 44 0 5 chr11 134688543 134688950 -14094522 + L1P2 LINE L1 5258 5662 -492 6328 133 1 25 chr11 134689976 134690555 -14092917 + L1PB1 LINE L1 4556 5148 -1003 2258 95 0 0 chr11 134690555 134690867 -14092605 + AluSq SINE Alu 1 312 0 6328 133 1 25 chr11 134690867 134691924 -14091548 + L1PB1 LINE L1 5148 6150 -1 2230 110 3 0 chr11 134691939 134692238 -14091234 + AluSq SINE Alu 1 300 -13 375 348 14 73 chr11 134692520 134692876 -14090596 + L2 LINE L2 2109 2443 -871 289 280 40 0 chr11 134692875 134692950 -14090522 + L2 LINE L2 3236 3313 0 * 525 297 87 34 chr11 134693382 134693777 -14089695 + MIR SINE MIR 17 251 -11 201 171 0 0 chr11 134695118 134695153 -14088319 + T-rich Low_complexity Low_complexity 1 35 0 612 40 0 0 chr11 134695665 134695740 -14087732 + (TATATG)n Simple_repeat Simple_repeat 2 76 0 276 53 0 0 chr11 134696029 134696067 -14087405 + (T)n Simple_repeat Simple_repeat 1 38 0 238 300 200 25 chr11 134697600 134697685 -14085787 - MIR SINE MIR -1 261 192 904 183 25 35 chr11 134697685 134697887 -14085585 - MER105 DNA DNA 0 204 5 238 300 200 25 chr11 134697887 134697961 -14085511 - MIR SINE MIR -70 192 74 1952 100 4 0 chr11 134698081 134698331 -14085141 + AluSx SINE Alu 34 284 -28 255 247 173 70 chr11 134698447 134698690 -14084782 + MARNA DNA Mariner 155 422 -164 447 236 12 85 chr11 134698823 134698850 -14084622 + MIR SINE MIR 89 116 -146 1859 171 3 7 chr11 134698850 134699154 -14084318 - AluJo SINE Alu -5 307 5 447 236 12 85 chr11 134699154 134699291 -14084181 + MIR SINE MIR 116 241 -21 3761 25 0 2 chr11 134699609 134700054 -14083418 - L1PA4 LINE L1 -2 6153 5710 1257 195 30 11 chr11 134700054 134700316 -14083156 - MER58B DNA MER1_type -4 337 71 365 278 58 50 chr11 134700568 134700738 -14082734 + MIR SINE MIR 1 172 -67 3307 116 94 14 chr11 134701201 134701752 -14081720 - LTR49 LTR ERV1 0 595 1 202 56 56 0 chr11 134701856 134701892 -14081580 + GA-rich Low_complexity Low_complexity 1 38 0 29 60 0 0 chr11 134703069 134703119 -14080353 + AT_rich Low_complexity Low_complexity 1 50 0 26 0 0 0 chr11 134703202 134703228 -14080244 + AT_rich Low_complexity Low_complexity 1 26 0 752 204 61 42 chr11 134703327 134703614 -14079858 - MLT1A1 LTR MaLR 0 365 1 1650 269 66 43 chr11 134704269 134704984 -14078488 + MER110-int LTR ERV1 3713 4443 -204 1477 195 87 0 chr11 134704994 134705357 -14078115 - MSTD LTR MaLR 0 396 1 6260 225 45 49 chr11 134705357 134706515 -14076957 - MSTD-int LTR MaLR 0 1735 574 1689 180 17 7 chr11 134706515 134706815 -14076657 - AluJb SINE Alu -9 303 1 6260 225 45 49 chr11 134706815 134707136 -14076336 - MSTD-int LTR MaLR -1161 574 262 517 29 0 0 chr11 134707136 134707204 -14076268 + L1PA4 LINE L1 6088 6155 0 6260 225 45 49 chr11 134707204 134707465 -14076007 - MSTD-int LTR MaLR -1473 262 1 1585 222 62 3 chr11 134707474 134707844 -14075628 - MSTD LTR MaLR -2 394 3 594 247 60 16 chr11 134708075 134708257 -14075215 + MER110 LTR ERV1 3 192 -299 624 181 148 4 chr11 134708263 134708495 -14074977 + L1MB5 LINE L1 5885 6180 0 852 273 83 0 chr11 134708498 134708762 -14074710 + MER110 LTR ERV1 186 471 -20 21 0 0 0 chr11 134708799 134708820 -14074652 + AT_rich Low_complexity Low_complexity 1 21 0 1590 166 35 56 chr11 134709142 134709461 -14074011 + AluJo SINE Alu 1 312 0 360 0 0 0 chr11 134709654 134709694 -14073778 + (TG)n Simple_repeat Simple_repeat 2 41 0 1052 262 146 36 chr11 134709706 134710240 -14073232 - MLT1E LTR MaLR 0 593 1 300 333 89 0 chr11 134710888 134711011 -14072461 - MIR3 SINE MIR -6 202 69 285 75 0 0 chr11 134711203 134711243 -14072229 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 406 333 7 7 chr11 134711244 134711391 -14072081 + MIR3 SINE MIR 60 206 -2 214 197 184 13 chr11 134711419 134711495 -14071977 - MIR SINE MIR -10 252 164 366 303 328 5 chr11 134711521 134711716 -14071756 - MIR SINE MIR -2 260 3 565 225 22 22 chr11 134712884 134713022 -14070450 + MIR3 SINE MIR 23 160 -48 22 0 0 0 chr11 134713242 134713264 -14070208 + AT_rich Low_complexity Low_complexity 1 22 0 555 184 0 0 chr11 134714332 134714430 -14069042 - MLT1G1 LTR MaLR 0 595 498 420 258 172 0 chr11 134714428 134714591 -14068881 - MLT1H1 LTR MaLR -343 212 22 * 276 271 179 13 chr11 134714597 134714748 -14068724 - MIR SINE MIR -48 214 39 284 95 0 0 chr11 134715260 134715302 -14068170 - Alu SINE Alu -9 293 252 2045 139 3 3 chr11 134716041 134716342 -14067130 - AluSx SINE Alu -11 301 1 2111 140 102 79 chr11 134716820 134716993 -14066479 - LTR49 LTR ERV1 -2 593 425 2537 120 5 41 chr11 134716993 134717248 -14066224 + MER57A LTR ERV1 1 237 -166 1975 149 3 0 chr11 134717248 134717536 -14065936 - AluSx SINE Alu -21 291 3 2537 120 5 41 chr11 134717536 134717698 -14065774 + MER57A LTR ERV1 237 403 0 2111 140 102 79 chr11 134717698 134718103 -14065369 - LTR49 LTR ERV1 -170 425 2 8555 173 52 45 chr11 134718105 134718335 -14065137 - LTR49-int LTR ERV1 0 6331 6104 3427 151 30 38 chr11 134718335 134718993 -14064479 - MER39B LTR ERV1 0 653 1 8555 173 52 45 chr11 134718993 134720488 -14062984 - LTR49-int LTR ERV1 -227 6104 3653 2118 119 0 0 chr11 134720488 134720774 -14062698 + AluSx SINE Alu 1 286 -26 8555 173 52 45 chr11 134720774 134721263 -14062209 - LTR49-int LTR ERV1 -2678 3653 3169 367 181 0 117 chr11 134721313 134721501 -14061971 - LTR49-int LTR ERV1 -3656 3102 2937 * 635 197 47 48 chr11 134721477 134721888 -14061584 - LTR49-int LTR ERV1 -2933 2190 1728 391 247 0 10 chr11 134722091 134722188 -14061284 - LTR49-int LTR ERV1 -2991 3340 3245 867 145 23 86 chr11 134722220 134722441 -14061031 - LTR49-int LTR ERV1 -3059 3272 3066 413 249 10 0 chr11 134722530 134722658 -14060814 - LTR49-int LTR ERV1 -3680 1981 1096 720 239 138 17 chr11 134722659 134722898 -14060574 - MER34C LTR ERV1 -158 427 160 380 225 19 19 chr11 134722906 134723039 -14060433 - LTR49-int LTR ERV1 -3673 2658 859 * 472 254 32 0 chr11 134723037 134723163 -14060309 - LTR49-int LTR ERV1 -4289 2042 1913 3233 191 102 120 chr11 134723226 134723976 -14059496 - LTR49-int LTR ERV1 -4426 1905 1143 252 318 0 0 chr11 134723976 134724042 -14059430 - tRNA-Glu-GAG tRNA tRNA 0 75 10 3233 191 102 120 chr11 134724042 134724883 -14058589 - LTR49-int LTR ERV1 -5188 1143 279 977 207 0 6 chr11 134724867 134725046 -14058426 - LTR49-int LTR ERV1 -6153 178 1 * 2479 113 113 82 chr11 134725049 134725626 -14057846 - LTR49 LTR ERV1 0 595 1 2252 167 53 7 chr11 134725792 134726205 -14057267 + MSTB1 LTR MaLR 1 432 0 258 32 0 0 chr11 134728250 134728281 -14055191 + (TG)n Simple_repeat Simple_repeat 1 31 0 2345 267 37 19 chr11 134728362 134729254 -14054218 - L1ME3A LINE L1 -1 6169 5262 2283 79 0 0 chr11 134729317 134729620 -14053852 - AluY SINE Alu 0 303 1 403 253 13 25 chr11 134729625 134729783 -14053689 - AluSq SINE Alu -6 307 152 2354 84 3 6 chr11 134730077 134730388 -14053084 - AluSq SINE Alu -3 310 1 908 283 47 11 chr11 134730388 134730664 -14052808 - L2 LINE L2 -584 2730 2445 11643 184 28 33 chr11 134730669 134730890 -14052582 - L1MA2 LINE L1 0 7723 7502 2058 146 3 0 chr11 134730890 134731191 -14052281 - AluSx SINE Alu -10 302 1 11643 184 28 33 chr11 134731191 134731942 -14051530 - L1MA2 LINE L1 -221 7502 6749 1512 211 18 0 chr11 134731942 134732249 -14051223 + AluJb SINE Alu 1 312 0 11643 184 28 33 chr11 134732249 134736002 -14047470 - L1MA2 LINE L1 -974 6749 3150 43 0 0 0 chr11 134736010 134736053 -14047419 + AT_rich Low_complexity Low_complexity 1 43 0 5339 157 18 11 chr11 134736053 134737601 -14045871 - L1PB1 LINE L1 -8 7562 6009 1399 257 32 2 chr11 134737604 134738067 -14045405 - L1MA2 LINE L1 -6381 1185 709 16487 161 29 19 chr11 134738074 134741213 -14042259 - L1PB1 LINE L1 -4385 3180 12 1702 239 85 47 chr11 134741228 134741548 -14041924 - L2 LINE L2 -893 2421 2068 369 0 0 0 chr11 134741548 134741589 -14041883 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 1702 239 85 47 chr11 134741589 134741846 -14041626 - L2 LINE L2 -1246 2068 1822 3124 198 40 21 chr11 134741846 134742615 -14040857 + L1MB8 LINE L1 5378 6161 -17 2135 297 52 4 chr11 134742633 134743331 -14040141 - L2 LINE L2 -1480 1834 1104 715 288 72 13 chr11 134743332 134743749 -14039723 - LTR16A LTR ERVL -4 453 1 444 320 0 8 chr11 134744473 134744595 -14038877 - L2 LINE L2 -2062 1252 1132 218 337 90 60 chr11 134744617 134744725 -14038747 + L2 LINE L2 2432 2535 -779 2039 131 0 0 chr11 134744725 134745058 -14038414 + AluSx SINE Alu 1 333 0 218 337 90 60 chr11 134745058 134745313 -14038159 + L2 LINE L2 2535 2807 -507 2391 79 3 0 chr11 134745516 134745807 -14037665 - AluSp SINE Alu -21 292 1 383 274 88 0 chr11 134745863 134745976 -14037496 + L2 LINE L2 3191 3313 0 195 139 0 0 chr11 134746794 134746830 -14036642 + (TG)n Simple_repeat Simple_repeat 2 37 0 999 74 17 23 chr11 134747925 134748100 -14035372 + (TTTC)n Simple_repeat Simple_repeat 1 174 0 23 33 0 0 chr11 134748960 134748990 -14034482 + AT_rich Low_complexity Low_complexity 1 30 0 279 54 0 0 chr11 134749908 134749945 -14033527 + (TG)n Simple_repeat Simple_repeat 1 37 0 204 317 56 78 chr11 134750680 134750822 -14032650 - MIR SINE MIR -43 219 81 434 241 135 23 chr11 134751114 134751247 -14032225 + MIR SINE MIR 105 252 -10 2632 40 0 0 chr11 134751681 134751981 -14031491 + AluY SINE Alu 1 300 -11 1984 153 0 0 chr11 134752336 134752630 -14030842 + AluSx SINE Alu 1 294 -18 8170 123 9 5 chr11 134753380 134755371 -14028101 - L1PA11 LINE L1 0 6174 4151 984 343 32 39 chr11 134756559 134756761 -14026711 - HERVL LTR ERVL -398 5366 5164 2200 125 0 10 chr11 134756761 134757072 -14026400 - AluSq SINE Alu -5 308 1 984 343 32 39 chr11 134757072 134757487 -14025985 - HERVL LTR ERVL -600 5164 4753 629 329 35 13 chr11 134757485 134757801 -14025671 - HERVL LTR ERVL -882 4603 4281 * 380 197 71 94 chr11 134757815 134757942 -14025530 + MER5C DNA MER1_type 1 124 -200 1531 148 7 56 chr11 134758048 134758318 -14025154 - AluJb SINE Alu -27 285 29 682 312 94 21 chr11 134758436 134758766 -14024706 - HERVL LTR ERVL -1455 4309 3956 1007 204 120 46 chr11 134758863 134759279 -14024193 + MLT1D LTR MaLR 22 467 0 357 159 0 0 chr11 134759334 134759397 -14024075 + (TA)n Simple_repeat Simple_repeat 2 64 0 647 296 83 0 chr11 134759840 134760070 -14023402 - HERVL LTR ERVL -2349 3305 3057 255 316 34 17 chr11 134760110 134760227 -14023245 - HERVL LTR ERVL -4238 1416 1298 232 212 45 15 chr11 134761947 134762013 -14021459 - L1MC5 LINE L1 -48 7913 7846 5307 146 66 26 chr11 134763542 134764674 -14018798 - L1MA8 LINE L1 0 6291 5116 2218 128 0 0 chr11 134764884 134765182 -14018290 - AluSx SINE Alu -14 298 1 6515 93 13 18 chr11 134765484 134766998 -14016474 + L1PA6 LINE L1 4642 6151 -3 670 213 71 0 chr11 134767134 134767275 -14016197 - MER96 DNA MER1_type? -8 167 17 827 338 115 42 chr11 134767280 134768572 -14014900 + L2 LINE L2 1861 3250 -22 1298 304 22 18 chr11 134769758 134770344 -14013128 - L2 LINE L2 0 3313 2725 204 40 0 0 chr11 134770351 134770376 -14013096 + (T)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr11 134770400 134770423 -14013049 + GC_rich Low_complexity Low_complexity 1 23 0 2598 40 7 0 chr11 134770539 134770841 -14012631 - AluY SINE Alu -7 304 1 2350 30 40 27 chr11 134770851 134771149 -14012323 - AluY SINE Alu -9 302 1 347 199 142 28 chr11 134771156 134771297 -14012175 - L1M4 LINE L1 -948 5198 5042 2878 174 9 4 chr11 134772711 134773166 -14010306 + MSTB2 LTR MaLR 1 457 0 337 234 21 57 chr11 134773409 134773550 -14009922 + L1ME LINE L1 1282 1417 -4967 1136 259 62 3 chr11 134773628 134773968 -14009504 + L1ME LINE L1 5576 5935 -471 2105 105 23 7 chr11 134773971 134774275 -14009197 + AluSg SINE Alu 2 310 0 23 33 0 0 chr11 134774437 134774467 -14009005 + AT_rich Low_complexity Low_complexity 1 30 0 2270 122 0 0 chr11 134774467 134774779 -14008693 - AluSx SINE Alu 0 312 1 471 264 14 40 chr11 134775401 134775549 -14007923 + MIR SINE MIR 4 147 -115 777 75 9 9 chr11 134775568 134775674 -14007798 + L1MB1 LINE L1 6062 6167 -1 1798 134 38 0 chr11 134775822 134776084 -14007388 + AluSx SINE Alu 3 274 -38 4176 163 11 3 chr11 134776396 134777112 -14006360 + L1MB3 LINE L1 5458 6179 -4 334 240 333 0 chr11 134777630 134777801 -14005671 - MIR SINE MIR -6 256 29 379 326 58 41 chr11 134779096 134779268 -14004204 - MIR SINE MIR -59 203 29 288 0 0 0 chr11 134779957 134779989 -14003483 + (TTTTA)n Simple_repeat Simple_repeat 3 34 0 1892 120 0 8 chr11 134779994 134780261 -14003211 - AluSx SINE Alu -47 265 1 358 269 62 69 chr11 134780774 134780875 -14002597 + MIR SINE MIR 53 154 -108 1460 13 0 0 chr11 134780875 134781032 -14002440 + L1PA2 LINE L1 5995 6151 -4 358 269 62 69 chr11 134781032 134781090 -14002382 + MIR SINE MIR 154 211 -51 413 288 38 23 chr11 134781599 134781731 -14001741 + MIR SINE MIR 50 183 -79 2372 162 25 5 chr11 134781936 134782332 -14001140 + L1MB5 LINE L1 5771 6174 0 1630 187 16 16 chr11 134782360 134782670 -14000802 + AluJo SINE Alu 1 310 -2 1340 193 55 16 chr11 134784384 134784695 -13998777 - MER33 DNA MER1_type -1 323 1 8225 69 1 2 chr11 134784717 134786518 -13996954 - L1PA6 LINE L1 -4 6150 4351 193 264 96 64 chr11 134787294 134787419 -13996053 - L2 LINE L2 -13 3300 3172 300 316 37 19 chr11 134788919 134789123 -13994349 + MIR SINE MIR 2 208 -54 2206 111 0 7 chr11 134789519 134789816 -13993656 + AluSx SINE Alu 1 295 -17 2101 114 0 7 chr11 134790473 134790770 -13992702 + AluSg SINE Alu 1 295 -15 246 375 17 0 chr11 134791227 134791347 -13992125 + L2 LINE L2 3173 3294 -19 259 273 0 0 chr11 134792229 134792295 -13991177 + MIR SINE MIR 79 144 -118 2497 56 16 0 chr11 134792403 134792707 -13990765 - AluY SINE Alu -2 309 1 462 55 0 0 chr11 134792711 134792766 -13990706 - L1PA8 LINE L1 -13 6159 6105 237 350 42 0 chr11 134793396 134793516 -13989956 - MIR3 SINE MIR -7 201 77 2001 102 0 98 chr11 134793799 134794134 -13989338 + AluSx SINE Alu 1 302 -10 2071 162 133 16 chr11 134795017 134795400 -13988072 + MSTA LTR MaLR 1 428 0 191 370 14 0 chr11 134795476 134795549 -13987923 + MIR SINE MIR 16 89 -119 625 320 70 57 chr11 134796965 134797337 -13986135 - L2 LINE L2 -9 3263 2887 326 317 126 0 chr11 134797471 134797650 -13985822 - MIR SINE MIR -58 150 6 280 292 34 0 chr11 134797668 134797757 -13985715 - MIR SINE MIR -1 261 170 21 36 0 0 chr11 134798167 134798195 -13985277 + AT_rich Low_complexity Low_complexity 1 28 0 274 279 164 30 chr11 134798731 134798896 -13984576 + MIR SINE MIR 16 202 -60 29 28 0 0 chr11 134799050 134799086 -13984386 + AT_rich Low_complexity Low_complexity 1 36 0 319 230 47 145 chr11 134799188 134799423 -13984049 + L2 LINE L2 3101 3312 -1 180 282 86 51 chr11 134799920 134800037 -13983435 - L2 LINE L2 -10 3262 3142 437 337 28 11 chr11 134800274 134800455 -13983017 - MIR SINE MIR -7 255 72 249 263 50 40 chr11 134801181 134801280 -13982192 - MIR SINE MIR -64 144 45 28 0 0 0 chr11 134801371 134801399 -13982073 + AT_rich Low_complexity Low_complexity 1 28 0 477 0 0 0 chr11 134801806 134801859 -13981613 + (TTTTA)n Simple_repeat Simple_repeat 3 55 0 200 282 39 48 chr11 134802110 134802213 -13981259 + MIR3 SINE MIR 106 207 -1 198 0 0 0 chr11 134802908 134802930 -13980542 + (T)n Simple_repeat Simple_repeat 1 22 0 210 143 0 0 chr11 134804179 134804214 -13979258 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 183 265 0 0 chr11 134804226 134804260 -13979212 + MIR SINE MIR 59 92 -116 373 167 0 22 chr11 134804460 134804550 -13978922 + GA-rich Low_complexity Low_complexity 2 89 0 183 204 0 0 chr11 134804582 134804626 -13978846 + GA-rich Low_complexity Low_complexity 4 47 0 5860 91 10 11 chr11 134805223 134805834 -13977638 + L1PA14 LINE L1 5353 5964 -197 1957 138 16 13 chr11 134805834 134806145 -13977327 + AluSx SINE Alu 1 312 0 5860 91 10 11 chr11 134806145 134806343 -13977129 + L1PA14 LINE L1 5964 6161 0 363 335 61 6 chr11 134806445 134806609 -13976863 + MIR3 SINE MIR 22 194 -14 266 257 188 14 chr11 134806668 134806812 -13976660 - MIR SINE MIR -1 261 93 833 235 76 32 chr11 134806834 134807085 -13976387 - MIR SINE MIR 0 262 1 266 371 70 46 chr11 134808076 134808445 -13975027 + L2 LINE L2 2600 2977 -337 1522 173 45 79 chr11 134808494 134808898 -13974574 - MLT1B LTR MaLR 0 390 1 243 313 0 38 chr11 134810030 134810110 -13973362 + L2 LINE L2 3193 3269 -3 462 203 43 36 chr11 134810771 134810909 -13972563 - MER96B DNA MER1_type? -183 234 96 329 245 42 49 chr11 134810921 134811064 -13972408 - MER96B DNA MER1_type? -274 143 2 3647 132 13 0 chr11 134811451 134811990 -13971482 - L1MC1 LINE L1 -5 6328 5783 243 295 89 27 chr11 134811999 134812111 -13971361 - MIR SINE MIR -65 143 25 806 299 33 8 chr11 134812585 134812829 -13970643 - MIR SINE MIR -1 261 12 420 321 38 8 chr11 134813245 134813376 -13970096 - MIR SINE MIR -108 154 20 1809 166 3 0 chr11 134813954 134814238 -13969234 - AluJb SINE Alu -27 285 1 391 326 22 0 chr11 134814437 134814575 -13968897 + MIR SINE MIR 119 259 -3 390 340 77 66 chr11 134814774 134815622 -13967850 - L2 LINE L2 -5 3267 2409 24 0 0 0 chr11 134816283 134816307 -13967165 + AT_rich Low_complexity Low_complexity 1 24 0 280 306 56 56 chr11 134818023 134818131 -13965341 - L3b LINE CR1 -4 1579 1472 233 304 78 104 chr11 134818312 134818621 -13964851 - L2 LINE L2 0 3272 2972 1955 153 3 0 chr11 134819149 134819449 -13964023 - AluSx SINE Alu -11 301 1 341 229 98 87 chr11 134819536 134819639 -13963833 + L2 LINE L2 3128 3235 -78 1967 154 0 10 chr11 134819639 134819951 -13963521 - AluSx SINE Alu -3 309 1 341 229 98 87 chr11 134819951 134820030 -13963442 + L2 LINE L2 3235 3312 -1 373 269 180 36 chr11 134820541 134820708 -13962764 - MIR SINE MIR -38 224 34 610 303 10 26 chr11 134820791 134820986 -13962486 - MIR SINE MIR -59 203 12 229 354 0 0 chr11 134822436 134822518 -13960954 + (TA)n Simple_repeat Simple_repeat 2 83 0 893 262 111 5 chr11 134822725 134823130 -13960342 + L1ME4a LINE L1 5548 5995 -126 1746 156 42 0 chr11 134823709 134823998 -13959474 - AluJo SINE Alu -11 301 1 951 274 8 16 chr11 134824296 134824548 -13958924 + MIR SINE MIR 13 262 0 1666 166 13 29 chr11 134825469 134825776 -13957696 - AluJo SINE Alu -10 302 1 354 298 245 5 chr11 134825841 134826029 -13957443 - MIR SINE MIR -27 235 3 186 43 0 0 chr11 134830148 134830171 -13953301 + (GA)n Simple_repeat Simple_repeat 2 24 0 185 0 0 118 chr11 134830312 134830346 -13953126 + (A)n Simple_repeat Simple_repeat 1 30 0 189 0 0 0 chr11 134830754 134830775 -13952697 + (T)n Simple_repeat Simple_repeat 1 21 0 33 56 0 0 chr11 134833950 134834004 -13949468 + AT_rich Low_complexity Low_complexity 1 54 0 2073 110 3 14 chr11 134834596 134834878 -13948594 + AluSx SINE Alu 1 279 -33 315 0 0 0 chr11 134834878 134834913 -13948559 + (CAA)n Simple_repeat Simple_repeat 2 36 0 2030 101 80 0 chr11 134836502 134836789 -13946683 - AluSg SINE Alu 0 310 1 304 330 86 50 chr11 134837275 134837496 -13945976 - L2 LINE L2 -35 3237 3009 348 302 25 115 chr11 134837799 134838034 -13945438 - L2 LINE L2 -189 3083 2870 2486 163 57 5 chr11 134838045 134838450 -13945022 + MSTB LTR MaLR 1 426 0 8751 186 29 30 chr11 134838450 134840098 -13943374 + MSTB-int LTR MaLR 1 1646 -5 686 159 9 0 chr11 134840102 134840209 -13943263 + MSTB LTR MaLR 1 108 -318 207 0 0 0 chr11 134840209 134840232 -13943240 + (T)n Simple_repeat Simple_repeat 1 23 0 1712 198 25 18 chr11 134840412 134840942 -13942530 - L1M1 LINE L1 -744 5402 4990 203 261 0 0 chr11 134841505 134841551 -13941921 + (CATA)n Simple_repeat Simple_repeat 2 47 0 901 169 7 0 chr11 134841774 134841922 -13941550 - FAM SINE Alu -36 149 1 21 57 0 0 chr11 134841952 134841987 -13941485 + AT_rich Low_complexity Low_complexity 1 35 0 308 299 109 46 chr11 134842142 134842554 -13940918 - L1ME4a LINE L1 -130 5991 5554 1858 289 31 8 chr11 134842556 134843347 -13940125 - HERVL-C1 LTR ERVL -4741 913 28 296 263 68 34 chr11 134843738 134843856 -13939616 + MER58B DNA MER1_type 220 341 0 479 172 40 30 chr11 134844425 134844524 -13938948 + MIR SINE MIR 40 139 -123 273 57 0 0 chr11 134845844 134845879 -13937593 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 480 208 18 99 chr11 134845985 134846206 -13937266 - L1MC5 LINE L1 -674 7287 7085 433 266 130 31 chr11 134846233 134846737 -13936735 + L1ME3A LINE L1 5596 6161 -9 723 273 96 16 chr11 134847023 134847389 -13936083 + ERVL LTR ERVL 3880 4274 -1490 229 317 60 48 chr11 134847606 134848004 -13935468 + L1 LINE L1 3543 3945 -2201 800 124 0 0 chr11 134848051 134848156 -13935316 + U6 snRNA snRNA 1 105 -2 838 162 0 0 chr11 134848158 134848294 -13935178 + L1P LINE L1 3953 4088 -2058 978 316 73 69 chr11 134848396 134849371 -13934101 - HERVL-C1 LTR ERVL -2652 3112 2134 972 314 41 7 chr11 134849398 134849812 -13933660 - HERVL-C1 LTR ERVL -2966 2030 1603 316 313 121 8 chr11 134850213 134850462 -13933010 - L1ME3A LINE L1 -219 5951 5675 340 330 11 17 chr11 134851421 134851600 -13931872 - L1MC4a LINE L1 -1755 6053 5876 287 254 42 0 chr11 134851694 134851765 -13931707 - 7SLRNA srpRNA srpRNA -13 307 234 546 227 61 119 chr11 134851781 134852059 -13931413 - L1MC4a LINE L1 -2034 5774 5513 441 247 207 6 chr11 134852092 134852266 -13931206 - L2 LINE L2 -1064 2250 2042 257 125 0 0 chr11 134852936 134852976 -13930496 - HERVL-C1 LTR ERVL -5614 40 1 1210 221 14 45 chr11 134852978 134853268 -13930204 - MLT2C1 LTR ERVL -2 395 115 1991 218 78 30 chr11 134854297 134854835 -13928637 - MLT1E3 LTR MaLR -40 584 21 588 264 7 14 chr11 134855061 134855201 -13928271 - MLT1F1 LTR MaLR -8 559 421 488 335 34 3 chr11 134855197 134855490 -13927982 - LTR16B LTR ERVL -56 408 107 * 1951 118 14 3 chr11 134855931 134856220 -13927252 - AluSq SINE Alu -13 300 9 400 250 164 0 chr11 134856302 134856430 -13927042 - L2 LINE L2 -667 2647 2499 1639 159 53 25 chr11 134856510 134856793 -13926679 + AluJb SINE Alu 1 291 -21 299 146 73 0 chr11 134856923 134856978 -13926494 - L1M4 LINE L1 -373 5801 5743 826 259 15 57 chr11 134856978 134857314 -13926158 - L1M4c LINE L1 -4489 1895 1574 1967 199 21 24 chr11 134860120 134860173 -13923299 + MSTB LTR MaLR 51 103 -323 2720 10 0 0 chr11 134860173 134860464 -13923008 - AluY SINE Alu -1 310 20 1967 199 21 24 chr11 134860464 134860787 -13922685 + MSTB LTR MaLR 103 426 0 215 330 239 17 chr11 134861143 134861440 -13922032 - L2 LINE L2 -691 2623 2261 346 269 147 13 chr11 134861749 134861905 -13921567 - MIR SINE MIR -71 191 15 513 299 35 15 chr11 134862073 134862270 -13921202 - MIR3 SINE MIR -1 207 7 273 259 59 12 chr11 134862678 134862763 -13920709 + MIR3 SINE MIR 72 160 -48 22 56 0 0 chr11 134863265 134863301 -13920171 + AT_rich Low_complexity Low_complexity 1 36 0 1701 227 95 20 chr11 134863357 134863811 -13919661 - L1ME1 LINE L1 -50 6116 5629 201 350 51 25 chr11 134865241 134865398 -13918074 + L2 LINE L2 3146 3306 -7 4534 181 44 9 chr11 134866118 134867275 -13916197 - L1MB3 LINE L1 0 6183 4988 437 276 47 24 chr11 134867280 134867407 -13916065 + L2 LINE L2 3138 3267 -5 210 235 25 99 chr11 134867807 134867888 -13915584 + MIR SINE MIR 86 160 -102 228 67 0 0 chr11 134868159 134868189 -13915283 + (TTG)n Simple_repeat Simple_repeat 1 30 0 2034 134 16 7 chr11 134868309 134868614 -13914858 + AluSx SINE Alu 1 308 -4 212 294 78 20 chr11 134868862 134868964 -13914508 + MIR SINE MIR 35 142 -66 326 109 64 0 chr11 134868999 134869109 -13914363 + (TA)n Simple_repeat Simple_repeat 1 117 0 216 192 44 60 chr11 134869163 134869345 -13914127 + (CATAT)n Simple_repeat Simple_repeat 2 180 0 * 290 162 73 15 chr11 134869298 134869434 -13914038 + (TA)n Simple_repeat Simple_repeat 2 145 0 454 362 35 0 chr11 134869471 134869670 -13913802 - MIR SINE MIR -8 254 49 207 259 9 36 chr11 134870832 134870944 -13912528 + (TAG)n Simple_repeat Simple_repeat 1 109 0 273 146 0 0 chr11 134871171 134871219 -13912253 + (TC)n Simple_repeat Simple_repeat 1 48 0 394 281 140 12 chr11 134871583 134871754 -13911718 - MIR SINE MIR -22 240 48 2667 124 60 39 chr11 134872717 134873112 -13910360 - L1MA5A LINE L1 -265 6032 5647 2097 111 7 0 chr11 134873112 134873391 -13910081 + AluSq SINE Alu 2 282 -31 255 31 0 0 chr11 134873394 134873426 -13910046 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2667 124 60 39 chr11 134873426 134873492 -13909980 - L1MA5A LINE L1 -651 5646 5557 1154 165 43 35 chr11 134873492 134873747 -13909725 + L1MA5 LINE L1 6044 6300 0 509 325 64 1 chr11 134873799 134874026 -13909446 - MIR SINE MIR -6 256 20 1435 125 62 36 chr11 134874332 134874556 -13908916 - MER30 DNA MER1_type 0 230 1 307 336 104 27 chr11 134874668 134874888 -13908584 + MIR SINE MIR 20 256 -6 330 229 90 74 chr11 134875510 134875632 -13907840 + MIR SINE MIR 7 130 -132 1286 68 11 0 chr11 134875638 134875815 -13907657 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 2263 64 0 7 chr11 134875821 134876103 -13907369 - AluY SINE Alu -31 280 1 2069 127 3 3 chr11 134876105 134876404 -13907068 - AluSx SINE Alu -13 299 1 1621 154 16 130 chr11 134877832 134878209 -13905263 - MER7A DNA MER2_type -1 345 14 423 0 0 0 chr11 134878220 134878267 -13905205 + (TG)n Simple_repeat Simple_repeat 2 48 0 23 0 0 0 chr11 134878581 134878604 -13904868 + AT_rich Low_complexity Low_complexity 1 23 0 2236 98 27 3 chr11 134879108 134879404 -13904068 + AluSq SINE Alu 1 303 -10 2112 87 0 8 chr11 134879408 134879674 -13903798 + AluY SINE Alu 29 292 -19 394 140 28 19 chr11 134879705 134879812 -13903660 + (TA)n Simple_repeat Simple_repeat 2 109 0 344 293 10 0 chr11 134879824 134879923 -13903549 - MLT1J2 LTR MaLR -286 164 65 2311 106 0 0 chr11 134882769 134883070 -13900402 - AluSg SINE Alu -9 301 1 209 311 0 11 chr11 134883072 134883162 -13900310 + T-rich Low_complexity Low_complexity 5 93 0 186 150 0 0 chr11 134883339 134883379 -13900093 + (TG)n Simple_repeat Simple_repeat 2 41 0 185 261 160 34 chr11 134884143 134884262 -13899210 - MIR SINE MIR -50 212 79 470 333 88 40 chr11 134884371 134884668 -13898804 - L2 LINE L2 0 3272 2962 632 308 72 13 chr11 134885902 134886139 -13897333 + MIR SINE MIR 12 262 0 182 203 219 16 chr11 134886140 134886204 -13897268 - MIR SINE MIR -75 187 111 219 36 0 0 chr11 134887438 134887466 -13896006 + (CA)n Simple_repeat Simple_repeat 2 29 0 619 271 68 5 chr11 134888318 134888527 -13894945 - MIR SINE MIR -6 256 30 326 303 79 24 chr11 134888567 134888732 -13894740 + L3b LINE CR1 1277 1450 -133 184 271 57 14 chr11 134889127 134889197 -13894275 + L2 LINE L2 2931 3003 -269 837 248 53 18 chr11 134889203 134889429 -13894043 + MIR SINE MIR 3 236 -26 210 318 88 73 chr11 134889453 134889645 -13893827 + L2 LINE L2 3004 3198 -74 609 286 40 18 chr11 134890166 134890390 -13893082 + MIR SINE MIR 14 242 -20 289 306 59 19 chr11 134890651 134890784 -13892688 - MIR SINE MIR -64 144 15 665 284 32 97 chr11 134893129 134893439 -13890033 + L2 LINE L2 2520 2809 -505 21 0 0 0 chr11 134894205 134894226 -13889246 + AT_rich Low_complexity Low_complexity 1 21 0 205 152 43 0 chr11 134894288 134894334 -13889138 + T-rich Low_complexity Low_complexity 2 49 0 5438 31 0 0 chr11 134894368 134895244 -13888228 - L1PA3 LINE L1 -526 5629 4754 4933 33 2 2 chr11 134895244 134895796 -13887676 + L1PA3 LINE L1 5604 6155 0 1450 194 3 31 chr11 134895958 134896251 -13887221 - AluJb SINE Alu -17 295 11 1091 199 40 0 chr11 134897184 134897385 -13886087 + MER3 DNA MER1_type 1 209 0 234 250 15 15 chr11 134897448 134897516 -13885956 + (TAAA)n Simple_repeat Simple_repeat 3 70 0 210 208 21 21 chr11 134897518 134897566 -13885906 + MIR SINE MIR 156 203 -59 21 0 0 0 chr11 134898409 134898430 -13885042 + AT_rich Low_complexity Low_complexity 1 21 0 209 308 192 0 chr11 134898536 134898640 -13884832 + L2 LINE L2 3147 3270 -2 318 50 0 0 chr11 134900548 134900588 -13882884 + (CA)n Simple_repeat Simple_repeat 1 40 0 342 333 22 44 chr11 134900912 134901092 -13882380 - MER5A DNA MER1_type 0 189 14 229 355 74 16 chr11 134901121 134901242 -13882230 - L2 LINE L2 0 3272 3145 1971 127 80 44 chr11 134901284 134901646 -13881826 - THE1C LTR MaLR 0 375 1 2135 229 60 30 chr11 134901769 134902029 -13881443 - MER74B LTR ERVL -67 555 304 1912 151 83 81 chr11 134902029 134902460 -13881012 - MSTB1 LTR MaLR 0 432 1 2135 229 60 30 chr11 134902460 134902736 -13880736 - MER74B LTR ERVL -318 304 3 2402 81 0 3 chr11 134903241 134903537 -13879935 - AluY SINE Alu -16 295 1 270 179 0 0 chr11 134903865 134903921 -13879551 + (TG)n Simple_repeat Simple_repeat 2 57 0 196 368 154 0 chr11 134904350 134904486 -13878986 + L3b LINE CR1 1351 1507 -76 2054 123 49 6 chr11 134904767 134905093 -13878379 - MER46B DNA MER2_type 0 236 22 23 68 0 0 chr11 134905166 134905210 -13878262 + AT_rich Low_complexity Low_complexity 1 44 0 2146 132 0 0 chr11 134906670 134906966 -13876506 - AluSx SINE Alu -16 296 1 351 286 27 27 chr11 134906969 134907081 -13876391 - MIR SINE MIR -60 148 37 271 311 17 27 chr11 134907115 134907288 -13876184 + MIR SINE MIR 4 262 0 318 240 165 9 chr11 134907409 134907544 -13875928 - MIR SINE MIR -65 143 38 213 333 32 0 chr11 134908183 134908246 -13875226 - L3b LINE CR1 -88 1495 1431 213 271 51 76 chr11 134908416 134908534 -13874938 - L2 LINE L2 -50 3263 3149 1527 286 42 68 chr11 134908638 134909718 -13873754 + L2 LINE L2 2011 3055 -217 2000 123 49 0 chr11 134910008 134910292 -13873180 + AluSx SINE Alu 1 298 -14 1233 305 68 15 chr11 134911525 134912377 -13871095 + L2 LINE L2 2415 3313 0 377 261 66 76 chr11 134912428 134912639 -13870833 - MIR SINE MIR -53 209 1 343 264 36 64 chr11 134912665 134912775 -13870697 - L2 LINE L2 0 3313 3207 1687 199 39 34 chr11 134912828 134913209 -13870263 - MLT1B LTR MaLR 0 390 8 1551 162 15 123 chr11 134913482 134913816 -13869656 - AluJo SINE Alu -4 298 1 250 234 41 138 chr11 134914506 134914651 -13868821 + MIR3 SINE MIR 46 176 -32 2166 106 0 10 chr11 134915171 134915472 -13868000 - AluSg SINE Alu -12 298 1 240 189 0 0 chr11 134916855 134916929 -13866543 + (TA)n Simple_repeat Simple_repeat 1 74 0 199 320 21 52 chr11 134916929 134917026 -13866446 - MER5B DNA MER1_type -58 120 27 513 239 38 31 chr11 134917850 134918009 -13865463 + MIR SINE MIR 92 251 -11 1872 151 52 3 chr11 134919484 134919775 -13863697 - AluSx SINE Alu -7 305 1 2241 143 47 16 chr11 134919880 134920244 -13863228 - THE1C LTR MaLR 0 375 1 401 232 219 26 chr11 134920437 134920588 -13862884 - MER5A DNA MER1_type 0 189 10 3196 140 4 8 chr11 134921040 134921532 -13861940 + L1PA15 LINE L1 5567 6056 -109 708 153 0 0 chr11 134921536 134921654 -13861818 - L1 LINE L1 -2178 3968 3851 241 100 140 0 chr11 134921654 134921704 -13861768 - MLT2A2 LTR ERVL 0 453 397 224 167 0 19 chr11 134921709 134921763 -13861709 + (TA)n Simple_repeat Simple_repeat 2 54 0 493 170 50 0 chr11 134921763 134921863 -13861609 + L1PA15 LINE L1 6061 6165 0 371 315 56 56 chr11 134922267 134922445 -13861027 + MIR3 SINE MIR 19 196 -12 1793 163 3 17 chr11 134924531 134924819 -13858653 + AluJb SINE Alu 10 293 -19 3082 275 47 27 chr11 134925160 134926227 -13857245 - L2 LINE L2 -503 2811 1724 680 284 84 13 chr11 134926580 134926879 -13856593 - L2 LINE L2 -1604 1710 1391 236 301 14 0 chr11 134927165 134927238 -13856234 + L2 LINE L2 3236 3309 -4 272 27 27 0 chr11 134927240 134927277 -13856195 + (GGAA)n Simple_repeat Simple_repeat 4 41 0 500 302 12 6 chr11 134928850 134929019 -13854453 + L3b LINE CR1 1276 1445 -138 479 284 90 54 chr11 134929101 134929174 -13854298 + MIR SINE MIR 24 93 -169 2195 112 0 3 chr11 134929174 134929468 -13854004 - AluSg SINE Alu -17 293 1 479 284 90 54 chr11 134929468 134929616 -13853856 + MIR SINE MIR 93 253 -9 1822 143 3 29 chr11 134930033 134930341 -13853131 + AluJo SINE Alu 1 300 -12 261 191 262 36 chr11 134930488 134930572 -13852900 + MIR SINE MIR 110 212 -50 768 202 133 27 chr11 134931204 134931392 -13852080 - MER63A DNA MER1_type -2 208 1 608 279 88 9 chr11 134931561 134931787 -13851685 + MIR SINE MIR 18 261 -1 245 189 0 19 chr11 134932258 134932311 -13851161 + GA-rich Low_complexity Low_complexity 2 53 0 282 256 24 12 chr11 134932689 134932771 -13850701 + MER5A DNA MER1_type 21 103 -86 * 301 309 73 8 chr11 134932702 134932825 -13850647 - MER5A DNA MER1_type -22 167 37 208 346 17 62 chr11 134933126 134933305 -13850167 + L2 LINE L2 2871 3041 -231 186 0 88 0 chr11 134933317 134933351 -13850121 + (TTATA)n Simple_repeat Simple_repeat 5 41 0 2331 212 29 87 chr11 134934149 134934510 -13848962 + L1MB8 LINE L1 5524 5827 -351 2023 150 13 0 chr11 134934510 134934817 -13848655 + AluSx SINE Alu 1 311 -1 2331 212 29 87 chr11 134934817 134935149 -13848323 + L1MB8 LINE L1 5827 6177 -1 593 323 57 67 chr11 134936003 134936103 -13847369 - L2 LINE L2 0 3313 3214 2359 92 0 0 chr11 134936103 134936407 -13847065 + AluSc SINE Alu 1 304 -5 593 323 57 67 chr11 134936407 134936742 -13846730 - L2 LINE L2 -99 3214 2882 370 286 54 41 chr11 134936784 134936931 -13846541 + MIR SINE MIR 40 188 -74 216 97 0 0 chr11 134937298 134937329 -13846143 + (TG)n Simple_repeat Simple_repeat 2 32 0 311 335 40 30 chr11 134937494 134937694 -13845778 + MIR SINE MIR 5 206 -56 61 45 0 0 chr11 134939321 134939410 -13844062 + AT_rich Low_complexity Low_complexity 1 89 0 246 244 61 24 chr11 134939734 134939816 -13843656 + LTR50 LTR ERVL 94 178 -617 389 216 31 10 chr11 134940264 134940361 -13843111 - MER53 DNA DNA -74 115 17 * 468 143 24 12 chr11 134940284 134940368 -13843104 + MER53 DNA DNA 105 189 0 2167 121 0 10 chr11 134940428 134940734 -13842738 + AluSg SINE Alu 1 303 -7 198 287 74 83 chr11 134940854 134940962 -13842510 - L2 LINE L2 -218 3054 2948 206 42 0 0 chr11 134940962 134940986 -13842486 + (A)n Simple_repeat Simple_repeat 1 24 0 187 232 179 27 chr11 134942889 134943001 -13840471 + L2 LINE L2 3176 3304 -9 247 274 128 26 chr11 134943192 134943309 -13840163 + L3b LINE CR1 1278 1406 -177 399 287 102 109 chr11 134943365 134943630 -13839842 - L2 LINE L2 0 3272 3010 197 222 0 0 chr11 134944098 134944150 -13839322 - MIR SINE MIR -114 148 98 429 288 53 35 chr11 134944912 134945082 -13838390 - MIR SINE MIR 0 262 90 839 94 0 8 chr11 134946027 134946155 -13837317 + (TTCCC)n Simple_repeat Simple_repeat 3 129 0 2352 90 17 3 chr11 134946496 134946797 -13836675 - AluSx SINE Alu 0 312 1 301 355 38 53 chr11 134947498 134947816 -13835656 - L2 LINE L2 -572 2742 2430 343 305 0 51 chr11 134951889 134952007 -13831465 + L3 LINE CR1 1455 1566 -11 572 333 170 18 chr11 134952299 134952741 -13830731 - L3 LINE CR1 -1 1576 1068 200 73 73 0 chr11 134952998 134953039 -13830433 + T-rich Low_complexity Low_complexity 2 45 0 210 268 113 0 chr11 134953366 134953437 -13830035 - MIR3 SINE MIR -127 81 3 229 315 181 8 chr11 134953805 134953932 -13829540 - MIR SINE MIR -113 149 1 180 0 0 0 chr11 134954229 134954249 -13829223 + (GGA)n Simple_repeat Simple_repeat 2 21 0 405 303 37 43 chr11 134955694 134955856 -13827616 + MIR SINE MIR 35 195 -67 396 0 0 0 chr11 134955984 134956028 -13827444 + (TA)n Simple_repeat Simple_repeat 2 45 0 210 91 0 0 chr11 134956438 134956471 -13827001 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 21 36 0 0 chr11 134957498 134957526 -13825946 + AT_rich Low_complexity Low_complexity 1 28 0 214 167 0 0 chr11 134957776 134957812 -13825660 + (ATG)n Simple_repeat Simple_repeat 1 36 0 904 249 32 0 chr11 134957975 134958192 -13825280 + MER58A DNA MER1_type 1 224 0 5759 53 1 3 chr11 134958344 134959097 -13824375 - L1PA5 LINE L1 0 6154 5403 198 293 61 24 chr11 134959912 134959994 -13823478 - L2 LINE L2 0 3313 3229 302 306 115 33 chr11 134960100 134960436 -13823036 - L2 LINE L2 -210 3062 2706 369 167 0 0 chr11 134961176 134961236 -13822236 - L2 LINE L2 0 3313 3254 185 348 29 0 chr11 134961981 134962050 -13821422 - L3b LINE CR1 -5 1578 1508 2175 96 27 14 chr11 134962347 134962640 -13820832 + AluSg SINE Alu 1 297 -13 255 266 168 18 chr11 134962792 134962905 -13820567 + L2 LINE L2 3142 3271 -1 2111 133 0 0 chr11 134963270 134963556 -13819916 - AluJo SINE Alu -26 286 1 2065 148 7 0 chr11 134963581 134963885 -13819587 - AluSx SINE Alu -6 306 1 264 210 16 0 chr11 134963903 134963965 -13819507 - MLT1K LTR MaLR -4 584 522 181 348 58 14 chr11 134964554 134964692 -13818780 - L2 LINE L2 -1 3312 3169 301 281 151 14 chr11 134965169 134965315 -13818157 + MIR SINE MIR 46 211 -51 25 83 0 0 chr11 134965432 134965492 -13817980 + AT_rich Low_complexity Low_complexity 1 60 0 285 221 70 0 chr11 134966461 134966547 -13816925 - MER103 DNA DNA -2 164 73 193 266 78 102 chr11 134967316 134967572 -13815900 + L2 LINE L2 3030 3279 -34 295 345 28 21 chr11 134967674 134967816 -13815656 + MIR SINE MIR 22 164 -98 711 319 39 4 chr11 134967838 134968070 -13815402 + MIR SINE MIR 13 252 -10 1862 180 15 0 chr11 134969106 134969440 -13814032 - MER2 DNA MER2_type -3 341 3 193 333 27 13 chr11 134969622 134969697 -13813775 - MIR SINE MIR -102 106 31 309 284 0 59 chr11 134970254 134970292 -13813180 + L2 LINE L2 3158 3197 -75 2125 138 3 3 chr11 134970292 134970603 -13812869 + AluSx SINE Alu 2 312 0 309 284 0 59 chr11 134970603 134970666 -13812806 + L2 LINE L2 3197 3253 -19 857 198 10 74 chr11 134971421 134971623 -13811849 - MER5A DNA MER1_type 0 189 1 4085 272 72 43 chr11 134972157 134974025 -13809447 - L2 LINE L2 0 3313 1388 1570 190 53 15 chr11 134974762 134975099 -13808373 - MLT1A1 LTR MaLR -11 354 5 376 293 0 9 chr11 134975180 134975296 -13808176 + MIR SINE MIR 135 249 -13 208 79 53 0 chr11 134975385 134975423 -13808049 + (TG)n Simple_repeat Simple_repeat 1 40 0 362 287 52 9 chr11 134975506 134975621 -13807851 - MIR SINE MIR -24 238 119 374 153 31 20 chr11 134976119 134976217 -13807255 + GA-rich Low_complexity Low_complexity 4 102 0 968 279 12 12 chr11 134978297 134978544 -13804928 + MIR SINE MIR 14 260 -2 264 331 14 62 chr11 134978947 134979079 -13804393 + MIR SINE MIR 28 154 -108 328 248 95 19 chr11 134979079 134979184 -13804288 - MER81 DNA DNA -1 113 1 264 331 14 62 chr11 134979184 134979196 -13804276 + MIR SINE MIR 154 165 -97 300 245 213 0 chr11 134980580 134980674 -13802798 - MIR3 SINE MIR -10 198 85 431 264 93 52 chr11 134982153 134982346 -13801126 + MIR SINE MIR 47 247 -15 2173 160 0 6 chr11 134982532 134982895 -13800577 - L1PB4 LINE L1 -8 6148 5788 27 0 0 0 chr11 134983038 134983065 -13800407 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr11 134983622 134983643 -13799829 + AT_rich Low_complexity Low_complexity 1 21 0 26 64 0 0 chr11 134983670 134983717 -13799755 + AT_rich Low_complexity Low_complexity 1 47 0 216 266 96 43 chr11 134984605 134984699 -13798773 - MIR SINE MIR -128 134 36 4061 37 0 0 chr11 134985612 134986095 -13797377 + L1PA3 LINE L1 5670 6152 -3 1966 136 10 3 chr11 134986233 134986535 -13796937 - AluSc SINE Alu -5 304 1 376 280 27 73 chr11 134986582 134986732 -13796740 + L2 LINE L2 3168 3310 -3 235 317 178 0 chr11 134986844 134986945 -13796527 - L2 LINE L2 -10 3262 3144 280 291 25 0 chr11 134987246 134987325 -13796147 - L2 LINE L2 -4 3309 3229 1451 178 101 21 chr11 134987604 134987941 -13795531 - MLT1A1 LTR MaLR 0 365 2 514 353 30 17 chr11 134988556 134988788 -13794684 - MIR SINE MIR -9 253 19 30 69 0 0 chr11 134989205 134989263 -13794209 + AT_rich Low_complexity Low_complexity 1 58 0 268 282 114 8 chr11 134989520 134989650 -13793822 - MIR3 SINE MIR -14 194 43 1793 193 5 18 chr11 134989677 134990071 -13793401 - L1 LINE L1 -885 5261 4873 517 142 34 153 chr11 134990073 134990249 -13793223 + L1MA9 LINE L1 6118 6272 -40 * 590 103 0 0 chr11 134990231 134990328 -13793144 + L1MA9 LINE L1 6216 6312 0 494 273 22 14 chr11 134990340 134990479 -13792993 - MER5A DNA MER1_type -48 141 2 294 29 0 0 chr11 134990877 134990912 -13792560 + (TA)n Simple_repeat Simple_repeat 1 35 0 262 239 176 70 chr11 134991138 134991280 -13792192 - MIR SINE MIR -97 165 9 261 0 0 0 chr11 134991697 134991726 -13791746 + (A)n Simple_repeat Simple_repeat 1 29 0 184 252 93 75 chr11 134991729 134991836 -13791636 + MIR SINE MIR 109 217 -45 364 321 49 25 chr11 134994338 134994500 -13788972 - MER117 DNA MER1_type 0 197 32 22 35 0 0 chr11 134994509 134994538 -13788934 + AT_rich Low_complexity Low_complexity 1 29 0 189 264 178 35 chr11 134995455 134995629 -13787843 + MIR SINE MIR 56 254 -8 180 0 0 0 chr11 134995932 134995952 -13787520 + (CAA)n Simple_repeat Simple_repeat 2 21 0 494 208 7 0 chr11 134997166 134997310 -13786162 + (CA)n Simple_repeat Simple_repeat 2 146 0 213 39 0 0 chr11 134998231 134998257 -13785215 + (CAG)n Simple_repeat Simple_repeat 2 27 0 2655 95 19 13 chr11 134999304 134999682 -13783790 - MLT2A1 LTR ERVL -64 380 1 1694 216 3 0 chr11 134999695 135000028 -13783444 + L1 LINE L1 3917 4250 -1896 * 4645 198 9 1 chr11 135000027 135001332 -13782140 + L1PA6 LINE L1 4792 6105 -49 7591 203 39 9 chr11 135001435 135003137 -13780335 + L1M4 LINE L1 2161 3912 -2234 2880 109 18 41 chr11 135003137 135003578 -13779894 - MLT2A1 LTR ERVL 0 444 14 632 283 112 27 chr11 135003776 135004221 -13779251 - HAL1 LINE L1 -5 2502 2020 2203 101 0 3 chr11 135004270 135004557 -13778915 - AluSc SINE Alu -23 286 1 2287 95 7 3 chr11 135004557 135004852 -13778620 - AluSg SINE Alu -14 296 1 213 284 0 11 chr11 135004856 135004944 -13778528 + T-rich Low_complexity Low_complexity 4 90 0 884 238 54 27 chr11 135008328 135008622 -13774850 + L1M4 LINE L1 4899 5200 -946 2227 73 7 3 chr11 135008986 135009273 -13774199 - AluSp SINE Alu -25 288 1 204 293 9 38 chr11 135009970 135010063 -13773409 + GA-rich Low_complexity Low_complexity 5 96 -11 2578 50 0 0 chr11 135010063 135010364 -13773108 - AluY SINE Alu -10 301 1 204 293 9 38 chr11 135010364 135010376 -13773096 + GA-rich Low_complexity Low_complexity 96 107 0 367 276 41 59 chr11 135010411 135010581 -13772891 - L1MC4 LINE L1 -65 7977 7811 364 306 0 48 chr11 135010639 135010786 -13772686 - L1ME2 LINE L1 -1 6163 6024 1931 126 0 0 chr11 135010900 135011161 -13772311 + AluSq SINE Alu 1 261 -52 12653 88 2 1 chr11 135011264 135012873 -13770599 + HERVL LTR ERVL 506 2117 -3537 4766 85 5 20 chr11 135012912 135013561 -13769911 + HERVL LTR ERVL 2107 2745 -2909 257 238 173 38 chr11 135013721 135013906 -13769566 + L1MC4 LINE L1 7691 7900 -142 215 170 0 19 chr11 135013933 135013986 -13769486 + (CA)n Simple_repeat Simple_repeat 1 52 0 3717 165 23 9 chr11 135013989 135014781 -13768691 - HUERS-P3 LTR ERV1 -8018 901 17 643 211 12 50 chr11 135014797 135014958 -13768514 - LTR9 LTR ERV1 0 612 458 2232 122 61 19 chr11 135015269 135015629 -13767843 + THE1C LTR MaLR 1 375 0 1073 99 13 0 chr11 135015629 135015781 -13767691 + THE1C-int LTR MaLR 1 154 -1426 1761 90 13 0 chr11 135015783 135016016 -13767456 + THE1C-int LTR MaLR 100 335 -1245 4181 110 54 23 chr11 135016165 135016828 -13766644 + L1MA3 LINE L1 5622 6305 0 1555 228 27 29 chr11 135017975 135018419 -13765053 + L1M4 LINE L1 4905 5347 -799 360 321 76 32 chr11 135018428 135018922 -13764550 + L2 LINE L2 2666 3181 -132 748 125 16 16 chr11 135019031 135019159 -13764313 - LTR22 LTR ERVK -381 128 1 883 203 0 0 chr11 135019208 135019366 -13764106 + FRAM SINE Alu 11 168 -8 24 0 0 0 chr11 135019366 135019390 -13764082 + AT_rich Low_complexity Low_complexity 1 24 0 2386 164 127 37 chr11 135019971 135020586 -13762886 + LTR8A LTR ERV1 1 670 -57 228 154 0 92 chr11 135020702 135020767 -13762705 + L1MCa LINE L1 2006 2064 -4362 354 256 0 0 chr11 135020777 135020898 -13762574 + (TA)n Simple_repeat Simple_repeat 2 122 0 225 173 0 136 chr11 135020898 135020979 -13762493 + L1MCa LINE L1 1995 2064 -4362 357 296 0 0 chr11 135020985 135021317 -13762155 + (TA)n Simple_repeat Simple_repeat 1 332 0 229 274 0 42 chr11 135021342 135021437 -13762035 - L1MC4 LINE L1 -1339 6703 6613 240 139 0 114 chr11 135021346 135021425 -13762047 + L1MCa LINE L1 1995 2064 -4362 216 250 0 0 chr11 135021437 135021501 -13761971 + (TA)n Simple_repeat Simple_repeat 1 64 0 198 0 0 0 chr11 135021530 135021552 -13761920 + (TA)n Simple_repeat Simple_repeat 2 23 0 257 50 0 25 chr11 135021658 135021698 -13761774 + (TA)n Simple_repeat Simple_repeat 2 40 0 2651 86 43 8 chr11 135021698 135022071 -13761401 - MLT2A1 LTR ERVL -58 386 1 44745 69 9 13 chr11 135022071 135027745 -13755727 - HERVL-A1-A1 LTR ERVL 0 5654 1 3276 91 23 9 chr11 135027745 135028183 -13755289 - MLT2A1 LTR ERVL 0 444 1 523 107 25 44 chr11 135029175 135029334 -13754138 + (TA)n Simple_repeat Simple_repeat 2 157 0 223 225 14 14 chr11 135029545 135029616 -13753856 + (TA)n Simple_repeat Simple_repeat 1 71 0 195 388 48 0 chr11 135030129 135030232 -13753240 - MIR3 SINE MIR -92 116 9 2142 128 0 0 chr11 135030384 135030682 -13752790 - AluSg SINE Alu -12 298 1 242 302 45 89 chr11 135030819 135030998 -13752474 + MIR SINE MIR 92 262 0 454 86 0 0 chr11 135031924 135031982 -13751490 - U6 snRNA snRNA -3 104 47 2791 218 55 34 chr11 135032200 135033316 -13750156 - L1MCa LINE L1 -4308 2299 973 234 279 0 47 chr11 135034586 135034672 -13748800 - L3 LINE CR1 -348 1229 1148 274 246 16 0 chr11 135034953 135035014 -13748458 + L2 LINE L2 3209 3270 -2 5926 108 14 17 chr11 135035266 135036219 -13747253 - L1PB1 LINE L1 -2 6149 5200 227 283 0 0 chr11 135036913 135036966 -13746506 - L3 LINE CR1 -473 1104 1052 309 354 99 11 chr11 135037433 135037614 -13745858 - MIR SINE MIR -63 199 3 361 308 46 15 chr11 135038227 135038357 -13745115 + MER94 DNA DNA 1 134 0 190 228 0 70 chr11 135038402 135038459 -13745013 + MIR SINE MIR 205 257 -5 12217 56 6 5 chr11 135039830 135042080 -13741392 - L1PA5 LINE L1 -1 6153 3900 1938 181 79 26 chr11 135042083 135042435 -13741037 - MSTB LTR MaLR 0 426 51 2588 56 7 0 chr11 135042435 135042740 -13740732 - AluY SINE Alu -4 307 1 1938 181 79 26 chr11 135042740 135042768 -13740704 - MSTB LTR MaLR -375 51 26 608 270 78 35 chr11 135043006 135043327 -13740145 - MLT1I LTR MaLR 0 409 93 604 333 87 10 chr11 135043535 135043925 -13739547 - LTR16B LTR ERVL 0 464 45 414 273 28 57 chr11 135044151 135044275 -13739197 + MIR3 SINE MIR 38 157 -51 525 264 92 11 chr11 135044275 135044449 -13739023 - MER5A DNA MER1_type 0 189 2 414 273 28 57 chr11 135044449 135044500 -13738972 + MIR3 SINE MIR 157 208 0 194 299 75 41 chr11 135044740 135044887 -13738585 - MIR SINE MIR -1 261 110 4672 125 21 49 chr11 135045112 135045963 -13737509 - L1PA13 LINE L1 -1 6162 5336 253 289 30 25 chr11 135046111 135046248 -13737224 + MIR SINE MIR 56 190 -64 212 282 59 0 chr11 135047272 135047357 -13736115 - L2 LINE L2 -929 2385 2296 1120 101 6 11 chr11 135047420 135047599 -13735873 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 1176 83 6 11 chr11 135047612 135047793 -13735679 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 648 70 0 0 chr11 135047794 135047880 -13735592 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 724 108 0 9 chr11 135047886 135047997 -13735475 - L1PB1 LINE L1 -5 6146 6037 196 393 49 28 chr11 135048038 135048323 -13735149 + L2 LINE L2 2307 2597 -717 1099 257 94 63 chr11 135048472 135048919 -13734553 + MLT1J LTR MaLR 1 461 -50 198 265 88 15 chr11 135049321 135049389 -13734083 + MER5A DNA MER1_type 117 189 0 611 238 97 52 chr11 135049389 135049637 -13733835 - L3 LINE CR1 -104 1473 1215 928 174 0 0 chr11 135049669 135049841 -13733631 - L1MA4 LINE L1 -39 6261 6090 1508 104 35 23 chr11 135049917 135050177 -13733295 - L1MA5 LINE L1 0 6300 6038 221 313 15 0 chr11 135050776 135050843 -13732629 + L2 LINE L2 3244 3311 -2 1922 205 107 7 chr11 135052047 135052505 -13730967 - L1MC/D LINE L1 -2047 5761 5258 359 302 108 42 chr11 135052689 135053641 -13729831 - L1MC/D LINE L1 -1079 5067 4030 2950 219 96 9 chr11 135053753 135054555 -13728917 - L1ME1 LINE L1 -5 6161 5290 442 158 97 18 chr11 135054589 135054603 -13728869 - L1MA10 LINE L1 -42 6292 6279 549 265 54 71 chr11 135054603 135054897 -13728575 - L1ME1 LINE L1 -47 6617 6329 1163 228 48 0 chr11 135054982 135055293 -13728179 - L1ME1 LINE L1 -1571 5073 4748 486 273 119 23 chr11 135055389 135055565 -13727907 + MIR SINE MIR 22 214 -48 21 0 0 0 chr11 135055930 135055951 -13727521 + AT_rich Low_complexity Low_complexity 1 21 0 1886 257 55 66 chr11 135055951 135056359 -13727113 - L1ME1 LINE L1 -3993 2832 2421 1778 154 51 51 chr11 135056359 135056749 -13726723 + MLT1B LTR MaLR 1 390 0 1886 257 55 66 chr11 135056749 135057596 -13725876 - L1ME1 LINE L1 -4404 2421 1416 5809 159 14 9 chr11 135057623 135059411 -13724061 - L1PB1 LINE L1 0 6867 5080 5892 194 31 50 chr11 135059422 135059985 -13723487 - L1PB1 LINE L1 -2814 4048 3476 2223 131 0 0 chr11 135059985 135060297 -13723175 - AluSx SINE Alu 0 312 1 5892 194 31 50 chr11 135060297 135061897 -13721575 - L1PB1 LINE L1 -3386 3476 2009 2172 131 0 0 chr11 135061897 135062203 -13721269 - AluSc SINE Alu -3 306 1 5892 194 31 50 chr11 135062203 135062436 -13721036 - L1PB1 LINE L1 -4853 2009 1773 2081 213 62 10 chr11 135062440 135063022 -13720450 - L1ME1 LINE L1 -5103 1439 828 1324 234 201 9 chr11 135063023 135063447 -13720025 - MLT1D LTR MaLR 0 505 1 547 218 24 32 chr11 135063447 135063571 -13719901 - L1ME1 LINE L1 -5711 831 709 1772 299 11 14 chr11 135063579 135064145 -13719327 - L1ME1 LINE L1 -5971 571 8 873 225 76 0 chr11 135064155 135064417 -13719055 - L1ME LINE L1 -588 6373 6092 496 246 0 0 chr11 135064411 135064525 -13718947 - L1ME LINE L1 -1199 5742 5629 * 799 300 69 46 chr11 135064523 135064913 -13718559 - L1ME LINE L1 -5130 1293 895 447 296 34 10 chr11 135064911 135065117 -13718355 - L1M4 LINE L1 -2208 3938 3728 * 359 238 37 55 chr11 135065288 135065452 -13718020 - L1M4 LINE L1 -2911 3235 3075 21 0 0 0 chr11 135065659 135065680 -13717792 + AT_rich Low_complexity Low_complexity 1 21 0 1503 246 60 18 chr11 135065801 135066302 -13717170 - L1M4 LINE L1 -1142 5004 4483 2081 129 0 7 chr11 135068239 135068541 -13714931 + AluSx SINE Alu 1 300 -12 180 336 118 0 chr11 135070575 135070685 -13712787 - MIR SINE MIR -58 204 82 599 146 0 0 chr11 135072283 135072379 -13711093 - L1MD3 LINE L1 0 7995 7900 271 148 0 37 chr11 135072556 135072610 -13710862 - L1MC3 LINE L1 -45 7740 7689 2335 106 0 0 chr11 135072663 135072964 -13710508 - AluSx SINE Alu -11 301 1 298 365 115 4 chr11 135073909 135074169 -13709303 - L2 LINE L2 -926 2388 2100 292 305 137 8 chr11 135075563 135075694 -13707778 - L2 LINE L2 0 3313 3166 724 312 41 34 chr11 135075843 135076135 -13707337 + MLT1I LTR MaLR 98 391 -18 1169 110 150 0 chr11 135076202 135076402 -13707070 - MER30 DNA MER1_type 0 230 1 180 0 0 0 chr11 135076440 135076460 -13707012 + (T)n Simple_repeat Simple_repeat 1 20 0 226 239 43 0 chr11 135077982 135078028 -13705444 - L2 LINE L2 -15 3298 3251 443 294 78 22 chr11 135079200 135079380 -13704092 - MIR SINE MIR -72 190 1 844 228 82 5 chr11 135079854 135080060 -13703412 - MER58A DNA MER1_type -1 223 2 5601 239 47 25 chr11 135080192 135081864 -13701608 - L1ME1 LINE L1 -13 6153 4520 1454 224 64 35 chr11 135081864 135082316 -13701156 - MLT1C LTR MaLR -2 465 1 5601 239 47 25 chr11 135082316 135082981 -13700491 - L1ME1 LINE L1 -1646 4520 3749 2435 88 0 0 chr11 135082981 135083288 -13700184 - AluSg SINE Alu -3 307 1 5601 239 47 25 chr11 135083288 135083665 -13699807 - L1ME1 LINE L1 -2417 3749 3382 2207 121 0 3 chr11 135083849 135084205 -13699267 + AluSq SINE Alu 1 355 0 502 356 50 0 chr11 135084586 135084808 -13698664 - MIR SINE MIR -21 241 9 283 127 32 16 chr11 135088405 135088468 -13695004 + (CATATA)n Simple_repeat Simple_repeat 1 64 0 201 241 63 13 chr11 135088484 135088563 -13694909 + (TATATG)n Simple_repeat Simple_repeat 4 86 0 277 323 61 0 chr11 135089010 135089109 -13694363 + MIR SINE MIR 49 153 -109 669 271 73 6 chr11 135089419 135089596 -13693876 - MIR3 SINE MIR 0 208 20 204 219 0 0 chr11 135089924 135089965 -13693507 - MIR SINE MIR -4 258 218 * 251 286 0 0 chr11 135089931 135089987 -13693485 - L2 LINE L2 -17 3255 3200 1886 98 0 4 chr11 135090221 135090543 -13692929 - AluSx SINE Alu 0 358 38 943 172 32 0 chr11 135090835 135090992 -13692480 + FRAM SINE Alu 1 161 -15 459 52 0 0 chr11 135091690 135091748 -13691724 + (TG)n Simple_repeat Simple_repeat 1 58 0 351 44 0 0 chr11 135091747 135091792 -13691680 + (GA)n Simple_repeat Simple_repeat 1 45 0 * 782 146 23 6 chr11 135093466 135093637 -13689835 + CT-rich Low_complexity Low_complexity 4 177 0 378 265 20 0 chr11 135093654 135093756 -13689716 + CT-rich Low_complexity Low_complexity 1 104 0 315 85 0 0 chr11 135093756 135093803 -13689669 + (TTCC)n Simple_repeat Simple_repeat 1 47 0 180 189 233 0 chr11 135094592 135094682 -13688790 + MER5C DNA MER1_type 182 292 -32 22 0 0 0 chr11 135096258 135096280 -13687192 + AT_rich Low_complexity Low_complexity 1 22 0 2352 105 0 9 chr11 135096638 135096953 -13686519 - AluSx SINE Alu 0 312 1 387 0 0 0 chr11 135099035 135099078 -13684394 + (TG)n Simple_repeat Simple_repeat 2 44 0 265 299 15 0 chr11 135100795 135100862 -13682610 - L2 LINE L2 -2 3270 3203 21 0 0 0 chr11 135102094 135102115 -13681357 + AT_rich Low_complexity Low_complexity 1 21 0 1841 122 0 0 chr11 135102866 135103112 -13680360 + AluSg SINE Alu 49 294 -16 253 227 191 18 chr11 135104140 135104250 -13679222 - MLT1H LTR MaLR -16 533 405 247 256 122 11 chr11 135104404 135104494 -13678978 - MLT1I LTR MaLR -233 176 77 180 0 0 0 chr11 135105107 135105127 -13678345 + (TC)n Simple_repeat Simple_repeat 1 20 0 1996 107 0 7 chr11 135106135 135106406 -13677066 + AluSx SINE Alu 42 310 -2 2501 68 0 3 chr11 135107556 135107865 -13675607 - AluY SINE Alu -1 310 3 2433 82 0 19 chr11 135110143 135110462 -13673010 + AluSq SINE Alu 1 313 0 1207 279 59 45 chr11 135110828 135111320 -13672152 + LTR33 LTR ERVL 17 515 -6 289 368 26 34 chr11 135111406 135111523 -13671949 + L2 LINE L2 3134 3249 -23 2198 114 0 0 chr11 135112008 135112307 -13671165 - AluSq SINE Alu -14 299 1 1985 122 31 3 chr11 135113532 135113819 -13669653 - AluSq SINE Alu -18 295 1 1075 80 7 7 chr11 135113943 135114093 -13669379 - L1PB2 LINE L1 -7 6144 5995 2457 126 55 24 chr11 135114756 135115177 -13668295 - Tigger2a DNA MER2_type 0 434 1 1659 191 0 23 chr11 135115288 135115592 -13667880 - AluJo SINE Alu -11 301 5 528 169 57 0 chr11 135115731 135115855 -13667617 - L1MA6 LINE L1 0 6300 6170 21 0 0 0 chr11 135116570 135116591 -13666881 + AT_rich Low_complexity Low_complexity 1 21 0 476 380 123 22 chr11 135117389 135118041 -13665431 - L2 LINE L2 0 3272 2553 2065 201 11 5 chr11 135118776 135119322 -13664150 - MER82 DNA MER2_type 0 653 7 2086 195 79 13 chr11 135119417 135119972 -13663500 - L1MC4a LINE L1 -1 7807 7216 1962 152 8 8 chr11 135120108 135120464 -13663008 - L1MA4 LINE L1 0 6300 5945 196 302 0 16 chr11 135120610 135120673 -13662799 - L2 LINE L2 -219 3053 2992 328 328 67 22 chr11 135120691 135120825 -13662647 - L2 LINE L2 0 3272 3133 1052 304 68 93 chr11 135120908 135121887 -13661585 - L3 LINE CR1 -14 1563 609 2473 51 0 19 chr11 135122623 135122935 -13660537 + AluY SINE Alu 1 306 -5 460 310 59 66 chr11 135122967 135123270 -13660202 - L2 LINE L2 -131 3182 2882 376 286 54 41 chr11 135123312 135123459 -13660013 + MIR SINE MIR 40 188 -74 216 97 0 0 chr11 135123826 135123857 -13659615 + (TG)n Simple_repeat Simple_repeat 2 32 0 320 335 38 34 chr11 135124022 135124231 -13659241 + MIR SINE MIR 5 214 -48 61 45 0 0 chr11 135125849 135125938 -13657534 + AT_rich Low_complexity Low_complexity 1 89 0 352 184 35 11 chr11 135126802 135126889 -13656583 - MER53 DNA DNA -84 105 17 * 422 143 24 12 chr11 135126812 135126896 -13656576 + MER53 DNA DNA 105 189 0 2094 128 3 10 chr11 135126956 135127261 -13656211 + AluSg SINE Alu 1 303 -7 232 250 74 83 chr11 135127381 135127489 -13655983 - L2 LINE L2 -218 3054 2948 2157 92 21 3 chr11 135127598 135127880 -13655592 - AluSx SINE Alu -25 287 1 301 355 38 53 chr11 135128581 135128899 -13654573 - L2 LINE L2 -572 2742 2430 343 305 0 51 chr11 135132972 135133090 -13650382 + L3 LINE CR1 1455 1566 -11 572 333 170 18 chr11 135133382 135133824 -13649648 - L3 LINE CR1 -1 1576 1068 200 73 73 0 chr11 135134081 135134122 -13649350 + T-rich Low_complexity Low_complexity 2 45 0 210 268 113 0 chr11 135134449 135134520 -13648952 - MIR3 SINE MIR -127 81 3 229 315 181 8 chr11 135134888 135135015 -13648457 - MIR SINE MIR -113 149 1 180 0 0 0 chr11 135135312 135135332 -13648140 + (GGA)n Simple_repeat Simple_repeat 2 21 0 297 213 181 7 chr11 135136148 135136303 -13647169 - L1MDb LINE L1 -5037 1181 1000 785 191 0 0 chr11 135136325 135136498 -13646974 - FLAM_C SINE Alu 0 174 2 565 317 89 67 chr11 135136557 135137500 -13645972 - L1MDb LINE L1 -5392 1004 41 185 207 0 0 chr11 135138398 135138427 -13645045 - L2 LINE L2 -39 3233 3205 372 59 0 0 chr11 135139551 135139602 -13643870 + (CA)n Simple_repeat Simple_repeat 2 52 0 23 0 0 0 chr11 135139861 135139884 -13643588 + AT_rich Low_complexity Low_complexity 1 23 0 31 0 0 0 chr11 135140574 135140605 -13642867 + AT_rich Low_complexity Low_complexity 1 31 0 545 250 9 0 chr11 135140673 135140785 -13642687 + MER81 DNA DNA 2 114 0 397 205 19 112 chr11 135140820 135140902 -13642570 - MIR SINE MIR -4 258 197 7374 33 11 0 chr11 135140902 135142537 -13640935 - L1PA4 LINE L1 -6 6149 4507 397 205 19 112 chr11 135142537 135142615 -13640857 - MIR SINE MIR -65 197 113 6396 135 14 9 chr11 135142874 135144393 -13639079 + L1MA2 LINE L1 4481 6012 -292 396 0 0 0 chr11 135144393 135144437 -13639035 + (TG)n Simple_repeat Simple_repeat 2 45 0 6396 135 14 9 chr11 135144437 135144732 -13638740 + L1MA2 LINE L1 6012 6304 0 2487 141 2 5 chr11 135145584 135146003 -13637469 + L1MB3 LINE L1 5759 6176 -7 2239 103 3 3 chr11 135146006 135146316 -13637156 - AluSg SINE Alu 0 310 1 2010 136 3 13 chr11 135146344 135146675 -13636797 + AluSx SINE Alu 1 312 0 281 274 0 12 chr11 135147279 135147363 -13636109 + MIR SINE MIR 31 113 -149 2372 42 3 3 chr11 135147389 135147746 -13635726 + AluY SINE Alu 1 357 0 2799 140 4 2 chr11 135147779 135148244 -13635228 + L1MA8 LINE L1 5535 6000 -291 2343 118 0 3 chr11 135149410 135149724 -13633748 + AluSq SINE Alu 1 313 0 186 226 16 48 chr11 135149873 135149935 -13633537 - MIR3 SINE MIR -7 201 142 579 158 47 0 chr11 135150680 135150807 -13632665 - L1MB3 LINE L1 -1 6182 6050 21 0 0 0 chr11 135150819 135150840 -13632632 + AT_rich Low_complexity Low_complexity 1 21 0 1526 90 0 10 chr11 135150881 135151081 -13632391 - AluSg/x SINE Alu -12 298 101 1251 193 50 92 chr11 135151387 135151766 -13631706 - MLT1A1 LTR MaLR -2 363 1 611 344 83 24 chr11 135151866 135152287 -13631185 - L3 LINE CR1 -58 1519 1074 262 351 54 91 chr11 135153373 135153800 -13629672 + L2 LINE L2 2836 3246 -26 354 273 15 8 chr11 135154380 135154512 -13628960 + (TA)n Simple_repeat Simple_repeat 2 134 0 198 0 0 0 chr11 135155341 135155363 -13628109 + (T)n Simple_repeat Simple_repeat 1 22 0 2052 117 0 46 chr11 135155851 135156175 -13627297 + AluSc SINE Alu 1 309 0 21 0 0 0 chr11 135157078 135157099 -13626373 + AT_rich Low_complexity Low_complexity 1 21 0 200 374 44 11 chr11 135157162 135157253 -13626219 + MIR SINE MIR 49 142 -66 354 196 28 9 chr11 135157255 135157362 -13626110 + CT-rich Low_complexity Low_complexity 3 111 0 1469 198 83 21 chr11 135157365 135157831 -13625641 + MER39 LTR ERV1 1 707 0 226 190 60 10 chr11 135157831 135157931 -13625541 + CT-rich Low_complexity Low_complexity 1 105 0 22 70 0 0 chr11 135157999 135158042 -13625430 + AT_rich Low_complexity Low_complexity 1 43 0 716 286 55 31 chr11 135158163 135158418 -13625054 + MIR SINE MIR 2 262 0 203 330 28 135 chr11 135158785 135159067 -13624405 + L2 LINE L2 2956 3207 -65 390 289 16 16 chr11 135160519 135160647 -13622825 - MIR SINE MIR -99 163 36 320 174 0 14 chr11 135160786 135160855 -13622617 + (TATG)n Simple_repeat Simple_repeat 2 69 0 610 298 152 30 chr11 135162147 135162543 -13620929 + LTR16A LTR ERVL 1 437 -13 2191 100 9 18 chr11 135163729 135164070 -13619402 - L1PA14 LINE L1 -6 6155 5818 312 178 28 47 chr11 135164079 135164186 -13619286 + CT-rich Low_complexity Low_complexity 1 105 0 236 388 0 0 chr11 135164518 135164603 -13618869 + MIR SINE MIR 58 142 -66 224 355 52 85 chr11 135164616 135164864 -13618608 + L2 LINE L2 2999 3238 -34 1593 217 71 21 chr11 135165582 135166019 -13617453 + LTR40b LTR ERVL 3 461 -1 454 274 91 41 chr11 135166139 135166336 -13617136 - MIR SINE MIR -16 246 40 2727 125 21 19 chr11 135167513 135167937 -13615535 + MSTC LTR MaLR 4 428 0 457 324 5 32 chr11 135168775 135168957 -13614515 - MIR SINE MIR -66 142 15 1343 238 28 59 chr11 135169352 135169811 -13613661 - MER39 LTR ERV1 -3 704 260 327 160 350 0 chr11 135169786 135169886 -13613586 - MER39 LTR ERV1 -572 135 1 * 937 289 28 4 chr11 135169980 135170233 -13613239 - MIR SINE MIR -1 261 3 1310 198 74 19 chr11 135170337 135170660 -13612812 + MER58B DNA MER1_type 1 341 0 3585 126 40 10 chr11 135171393 135171735 -13611737 - L1MB3 LINE L1 0 6183 5814 2125 138 0 0 chr11 135171735 135172039 -13611433 - AluSx SINE Alu -8 304 1 3585 126 40 10 chr11 135172039 135172298 -13611174 - L1MB3 LINE L1 -369 5814 5564 182 36 0 36 chr11 135172518 135172546 -13610926 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 216 0 0 0 chr11 135173588 135173612 -13609860 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 2025 124 0 0 chr11 135173612 135173887 -13609585 - AluSx SINE Alu -37 275 1 397 242 11 0 chr11 135173985 135174080 -13609392 + MIR SINE MIR 119 214 -48 735 299 19 19 chr11 135174203 135174417 -13609055 + MIR SINE MIR 45 258 -4 1984 176 101 4 chr11 135174458 135174934 -13608538 + Charlie1b DNA MER1_type 2 523 0 311 108 0 51 chr11 135176498 135176580 -13606892 - MLT2A2 LTR ERVL 0 453 402 198 125 16 31 chr11 135176616 135176680 -13606792 + (TA)n Simple_repeat Simple_repeat 2 64 0 240 170 39 20 chr11 135176718 135176871 -13606601 + (TA)n Simple_repeat Simple_repeat 1 156 0 446 294 78 22 chr11 135178152 135178332 -13605140 - MIR SINE MIR -72 190 1 840 228 82 5 chr11 135178806 135179012 -13604460 - MER58A DNA MER1_type -1 223 2 3215 226 46 17 chr11 135179144 135180818 -13602654 - L1ME1 LINE L1 -13 6153 4436 1412 227 62 35 chr11 135180820 135181273 -13602199 - MLT1C LTR MaLR -2 465 1 2237 264 51 37 chr11 135181276 135181940 -13601532 - L1ME1 LINE L1 -1709 4437 3752 2452 88 0 0 chr11 135181940 135182247 -13601225 - AluSg SINE Alu -3 307 1 2237 264 51 37 chr11 135182247 135182624 -13600848 - L1ME1 LINE L1 -2394 3752 3382 2238 121 0 3 chr11 135182808 135183165 -13600307 + AluSq SINE Alu 1 356 0 481 360 50 0 chr11 135183546 135183768 -13599704 - MIR SINE MIR -21 241 9 283 127 32 16 chr11 135187366 135187429 -13596043 + (CATATA)n Simple_repeat Simple_repeat 1 64 0 201 241 63 13 chr11 135187445 135187524 -13595948 + (TATATG)n Simple_repeat Simple_repeat 4 86 0 270 333 61 0 chr11 135187971 135188070 -13595402 + MIR SINE MIR 49 153 -109 672 271 73 6 chr11 135188380 135188557 -13594915 - MIR3 SINE MIR 0 208 20 204 219 0 0 chr11 135188885 135188926 -13594546 - MIR SINE MIR -4 258 218 * 251 286 0 0 chr11 135188892 135188948 -13594524 - L2 LINE L2 -17 3255 3200 1996 104 0 4 chr11 135189211 135189481 -13593991 - AluSx SINE Alu -6 306 38 949 172 32 0 chr11 135189773 135189930 -13593542 + FRAM SINE Alu 1 161 -15 1700 195 0 0 chr11 135190442 135190734 -13592738 + AluJo SINE Alu 1 292 -20 295 192 27 0 chr11 135191709 135191782 -13591690 + MADE1 DNA Mariner 6 80 0 201 121 0 0 chr11 135192376 135192409 -13591063 + (TC)n Simple_repeat Simple_repeat 2 34 0 314 302 87 32 chr11 135193956 135194082 -13589390 - L2 LINE L2 -19 3253 3121 183 351 0 18 chr11 135194127 135194184 -13589288 + L2 LINE L2 3209 3264 -8 201 121 0 0 chr11 135194232 135194265 -13589207 + (TC)n Simple_repeat Simple_repeat 2 34 0 380 306 189 5 chr11 135194436 135194642 -13588830 + MIR SINE MIR 8 251 -11 258 136 0 0 chr11 135195012 135195056 -13588416 + (TG)n Simple_repeat Simple_repeat 1 44 0 222 222 0 0 chr11 135196312 135196366 -13587106 + T-rich Low_complexity Low_complexity 1 54 0 259 274 51 34 chr11 135197014 135197131 -13586341 - MIR SINE MIR 0 262 144 247 246 0 16 chr11 135197947 135198008 -13585464 + CT-rich Low_complexity Low_complexity 5 64 0 22 0 0 0 chr11 135199680 135199702 -13583770 + AT_rich Low_complexity Low_complexity 1 22 0 182 190 0 35 chr11 135200150 135200208 -13583264 + GA-rich Low_complexity Low_complexity 2 57 0 21 0 0 0 chr11 135205408 135205429 -13578043 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr11 135207664 135207689 -13575783 + AT_rich Low_complexity Low_complexity 1 25 0 259 286 0 0 chr11 135208122 135208192 -13575280 + MIR3 SINE MIR 128 197 -11 550 179 19 13 chr11 135208928 135209084 -13574388 + CT-rich Low_complexity Low_complexity 1 157 0 189 204 204 0 chr11 135209086 135209130 -13574342 - L2 LINE L2 -40 3232 3180 566 182 230 7 chr11 135210659 135210807 -13572665 - MIR SINE MIR 0 262 82 229 357 23 35 chr11 135211153 135211324 -13572148 - MIR3 SINE MIR -33 175 7 368 295 116 78 chr11 135212384 135213058 -13570414 + L2 LINE L2 2439 3086 -186 1030 214 5 0 chr11 135213058 135213264 -13570208 - MER3 DNA MER1_type 0 209 3 368 295 116 78 chr11 135213264 135213316 -13570156 + L2 LINE L2 3086 3135 -137 764 243 15 10 chr11 135213316 135213518 -13569954 - MER105 DNA DNA 0 204 2 368 295 116 78 chr11 135213518 135213578 -13569894 + L2 LINE L2 3135 3268 -4 409 268 11 12 chr11 135213918 135214023 -13569449 - L2 LINE L2 -15 3257 3168 731 211 75 0 chr11 135214068 135214229 -13569243 - MER5B DNA MER1_type -5 173 1 223 339 40 16 chr11 135214351 135214475 -13568997 - MIR3 SINE MIR -81 127 1 393 117 0 0 chr11 135214642 135214702 -13568770 + (TA)n Simple_repeat Simple_repeat 2 61 0 795 261 74 32 chr11 135215120 135215404 -13568068 - L3b LINE CR1 -96 1487 1192 305 48 32 32 chr11 135216257 135216319 -13567153 + (TA)n Simple_repeat Simple_repeat 2 63 0 2121 126 0 7 chr11 135216319 135216613 -13566859 - AluSg SINE Alu -18 292 1 216 0 0 0 chr11 135216689 135216713 -13566759 + (TG)n Simple_repeat Simple_repeat 1 24 0 884 325 57 70 chr11 135217963 135218134 -13565338 - L3 LINE CR1 -33 1544 1372 1419 41 0 0 chr11 135218134 135218355 -13565117 + (TTTC)n Simple_repeat Simple_repeat 1 221 0 1939 107 33 0 chr11 135218357 135218508 -13564964 - AluSx SINE Alu -28 284 119 366 23 0 0 chr11 135218508 135218551 -13564921 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1939 107 33 0 chr11 135218551 135218671 -13564801 - AluSx SINE Alu -193 119 4 884 325 57 70 chr11 135218671 135219184 -13564288 - L3 LINE CR1 -206 1371 864 330 324 61 14 chr11 135219275 135219423 -13564049 - L3 LINE CR1 -1080 497 343 204 40 0 0 chr11 135219457 135219482 -13563990 + (T)n Simple_repeat Simple_repeat 1 25 0 2202 111 3 3 chr11 135220260 135220558 -13562914 - AluSg SINE Alu -12 298 1 693 36 0 0 chr11 135220722 135220806 -13562666 + (GAAA)n Simple_repeat Simple_repeat 1 84 0 728 237 21 11 chr11 135220997 135221183 -13562289 - MER5A DNA MER1_type -1 188 1 277 310 55 35 chr11 135221193 135221338 -13562134 - L3b LINE CR1 -332 1251 1104 2081 122 0 0 chr11 135221816 135222137 -13561335 - AluSx SINE Alu 0 326 6 350 293 200 0 chr11 135222934 135223074 -13560398 - L2 LINE L2 -1 3271 3104 196 143 29 0 chr11 135225450 135225485 -13557987 - MIR3 SINE MIR -27 181 146 365 273 36 133 chr11 135226115 135226393 -13557079 + L2 LINE L2 2991 3241 -31 237 200 36 0 chr11 135226502 135226557 -13556915 + (TTCA)n Simple_repeat Simple_repeat 4 60 0 183 278 125 62 chr11 135226958 135227134 -13556338 - L2 LINE L2 -451 2863 2677 241 198 16 83 chr11 135227392 135227482 -13555990 - MIR SINE MIR -61 147 20 887 276 45 4 chr11 135227552 135227795 -13555677 - MIR SINE MIR -1 261 9 382 311 99 36 chr11 135228343 135228565 -13554907 - MIR SINE MIR 0 262 27 402 307 101 11 chr11 135228566 135228745 -13554727 - L2 LINE L2 -2 3311 3117 252 0 0 0 chr11 135229776 135229804 -13553668 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 378 0 0 0 chr11 135229803 135229845 -13553627 + (CA)n Simple_repeat Simple_repeat 1 42 0 278 215 161 31 chr11 135229909 135230039 -13553433 - MIR SINE MIR -18 244 98 207 0 0 0 chr11 135230879 135230902 -13552570 + (TG)n Simple_repeat Simple_repeat 1 23 0 182 114 0 29 chr11 135230967 135231002 -13552470 + (TTTC)n Simple_repeat Simple_repeat 2 35 0 1356 202 72 54 chr11 135234801 135235247 -13548225 + MLT1C LTR MaLR 14 467 0 2738 82 8 16 chr11 135235392 135235769 -13547703 - THE1C LTR MaLR 0 375 2 369 237 101 36 chr11 135236110 135236249 -13547223 + MIR SINE MIR 1 148 -114 223 257 14 29 chr11 135236307 135236377 -13547095 - MIR3 SINE MIR -11 197 129 22 35 0 0 chr11 135237465 135237494 -13545978 + AT_rich Low_complexity Low_complexity 1 29 0 254 389 53 48 chr11 135237578 135237786 -13545686 + L2 LINE L2 2887 3095 -177 1120 170 5 10 chr11 135237998 135238204 -13545268 - MLT1D LTR MaLR -2 503 299 6119 250 36 17 chr11 135238452 135240820 -13542652 - L1MEc LINE L1 -1736 4479 2104 2464 62 0 13 chr11 135240935 135241240 -13542232 - AluY SINE Alu -10 301 1 287 272 9 0 chr11 135242984 135243098 -13540374 + (TA)n Simple_repeat Simple_repeat 1 115 0 285 340 125 12 chr11 135244330 135244753 -13538719 + L2 LINE L2 1913 2383 -931 2330 59 0 11 chr11 135244828 135245137 -13538335 - AluY SINE Alu 0 306 1 183 80 0 0 chr11 135245421 135245446 -13538026 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 891 212 159 34 chr11 135245951 135246366 -13537106 - MLT1C LTR MaLR 0 467 1 232 324 0 0 chr11 135246686 135246754 -13536718 + (CTA)n Simple_repeat Simple_repeat 1 68 0 436 287 34 67 chr11 135246767 135246976 -13536496 - MIR SINE MIR -6 256 55 410 301 119 11 chr11 135247694 135247870 -13535602 - MIR SINE MIR -1 261 67 390 21 0 0 chr11 135248532 135248579 -13534893 + (TG)n Simple_repeat Simple_repeat 1 47 0 240 35 0 0 chr11 135248578 135248607 -13534865 + (GA)n Simple_repeat Simple_repeat 1 29 0 * 218 250 60 48 chr11 135248964 135249048 -13534424 - MIR SINE MIR -74 188 104 572 289 42 85 chr11 135249164 135249424 -13534048 + MIR SINE MIR 2 250 -12 367 232 125 73 chr11 135249440 135249712 -13533760 + MER46C DNA MER2_type 2 287 -51 966 292 38 36 chr11 135250025 135250474 -13532998 - LTR16B LTR ERVL -12 452 3 1898 151 52 3 chr11 135250988 135251279 -13532193 - AluSx SINE Alu -7 305 1 2088 140 47 16 chr11 135251384 135251748 -13531724 - THE1C LTR MaLR 0 375 1 410 232 219 26 chr11 135251941 135252092 -13531380 - MER5A DNA MER1_type 0 189 10 2959 140 4 8 chr11 135252543 135253035 -13530437 + L1PA15 LINE L1 5567 6056 -109 655 145 0 0 chr11 135253041 135253158 -13530314 - L1 LINE L1 -2180 3966 3850 228 162 14 27 chr11 135253192 135253266 -13530206 + (TA)n Simple_repeat Simple_repeat 1 73 0 439 170 50 0 chr11 135253266 135253366 -13530106 + L1PA15 LINE L1 6061 6165 0 381 315 56 56 chr11 135253770 135253948 -13529524 + MIR3 SINE MIR 19 196 -12 1786 170 3 17 chr11 135256034 135256322 -13527150 + AluJb SINE Alu 10 293 -19 3123 275 47 27 chr11 135256663 135257730 -13525742 - L2 LINE L2 -503 2811 1724 688 284 84 13 chr11 135258083 135258382 -13525090 - L2 LINE L2 -1604 1710 1391 240 301 14 0 chr11 135258668 135258741 -13524731 + L2 LINE L2 3236 3309 -4 272 27 27 0 chr11 135258743 135258780 -13524692 + (GGAA)n Simple_repeat Simple_repeat 4 41 0 520 302 12 6 chr11 135260353 135260522 -13522950 + L3b LINE CR1 1276 1445 -138 493 279 90 54 chr11 135260604 135260677 -13522795 + MIR SINE MIR 24 93 -169 2172 116 0 3 chr11 135260677 135260971 -13522501 - AluSg SINE Alu -17 293 1 493 279 90 54 chr11 135260971 135261119 -13522353 + MIR SINE MIR 93 253 -9 1921 147 0 23 chr11 135261536 135261843 -13521629 + AluJo SINE Alu 1 300 -12 266 191 262 36 chr11 135261990 135262074 -13521398 + MIR SINE MIR 110 212 -50 687 202 133 27 chr11 135262706 135262894 -13520578 - MER63A DNA MER1_type -2 208 1 621 279 88 9 chr11 135263063 135263289 -13520183 + MIR SINE MIR 18 261 -1 245 189 0 19 chr11 135263760 135263813 -13519659 + GA-rich Low_complexity Low_complexity 2 53 0 288 256 24 12 chr11 135264191 135264273 -13519199 + MER5A DNA MER1_type 21 103 -86 * 311 309 73 8 chr11 135264204 135264327 -13519145 - MER5A DNA MER1_type -22 167 37 256 329 42 51 chr11 135264598 135264814 -13518658 + L2 LINE L2 2828 3041 -231 186 0 88 0 chr11 135264826 135264860 -13518612 + (TTATA)n Simple_repeat Simple_repeat 5 41 0 2056 210 29 88 chr11 135265658 135266019 -13517453 + L1MB8 LINE L1 5524 5828 -350 2038 150 13 0 chr11 135266019 135266326 -13517146 + AluSx SINE Alu 1 311 -1 2056 210 29 88 chr11 135266326 135266650 -13516822 + L1MB8 LINE L1 5828 6169 -9 219 310 20 40 chr11 135267512 135267612 -13515860 - L2 LINE L2 0 3313 3216 2199 102 0 13 chr11 135267612 135267893 -13515579 + AluSc SINE Alu 1 279 -30 327 78 0 0 chr11 135267893 135267944 -13515528 + (CAAAC)n Simple_repeat Simple_repeat 3 53 0 2199 102 0 13 chr11 135267944 135267966 -13515506 + AluSc SINE Alu 279 300 -9 251 286 0 0 chr11 135268202 135268258 -13515214 + L2 LINE L2 3200 3255 -17 204 219 0 0 chr11 135268224 135268265 -13515207 + MIR SINE MIR 218 258 -4 * 672 271 73 6 chr11 135268593 135268770 -13514702 + MIR3 SINE MIR 20 208 0 280 323 61 0 chr11 135269080 135269179 -13514293 - MIR SINE MIR -109 153 49 201 241 63 13 chr11 135269626 135269705 -13513767 + (CATATA)n Simple_repeat Simple_repeat 4 86 0 283 127 32 16 chr11 135269721 135269784 -13513688 + (TATATG)n Simple_repeat Simple_repeat 1 64 0 496 356 50 0 chr11 135273382 135273604 -13509868 + MIR SINE MIR 9 241 -21 2237 121 0 3 chr11 135273985 135274341 -13509131 - AluSq SINE Alu 0 355 1 2366 260 49 33 chr11 135274525 135274902 -13508570 + L1ME1 LINE L1 3382 3751 -2395 2452 88 0 0 chr11 135274902 135275209 -13508263 + AluSg SINE Alu 1 307 -3 2366 260 49 33 chr11 135275209 135275870 -13507602 + L1ME1 LINE L1 3751 4437 -1709 1421 227 62 35 chr11 135275873 135276326 -13507146 + MLT1C LTR MaLR 1 465 -2 3245 227 47 15 chr11 135276328 135277998 -13505474 + L1ME1 LINE L1 4436 6153 -13 840 228 82 5 chr11 135278130 135278336 -13505136 + MER58A DNA MER1_type 2 223 -1 446 294 78 22 chr11 135278810 135278990 -13504482 + MIR SINE MIR 1 190 -72 5711 89 21 7 chr11 135280132 135280982 -13502490 - L1PA10 LINE L1 -1 6167 5306 1870 169 0 10 chr11 135281580 135281875 -13501597 - AluJo SINE Alu -20 292 1 1332 127 19 87 chr11 135283279 135283602 -13499870 - AluY SINE Alu -10 301 1 1052 304 68 93 chr11 135284338 135285317 -13498155 + L3 LINE CR1 609 1563 -14 328 328 67 22 chr11 135285400 135285534 -13497938 + L2 LINE L2 3133 3272 0 196 302 0 16 chr11 135285552 135285615 -13497857 + L2 LINE L2 2992 3053 -219 1962 152 8 8 chr11 135285761 135286117 -13497355 + L1MA4 LINE L1 5945 6300 0 2086 195 79 13 chr11 135286253 135286808 -13496664 + L1MC4a LINE L1 7216 7807 -1 2065 201 11 5 chr11 135286903 135287449 -13496023 + MER82 DNA MER2_type 7 653 0 462 370 129 28 chr11 135288184 135288836 -13494636 + L2 LINE L2 2553 3272 0 21 0 0 0 chr11 135289634 135289655 -13493817 + AT_rich Low_complexity Low_complexity 1 21 0 557 168 48 0 chr11 135290369 135290494 -13492978 + L1MA7 LINE L1 6161 6291 0 1613 197 0 26 chr11 135290632 135290937 -13492535 + AluJo SINE Alu 5 301 -11 2457 126 55 24 chr11 135291048 135291469 -13492003 + Tigger2a DNA MER2_type 1 434 0 1075 80 7 7 chr11 135292132 135292282 -13491190 + L1PB2 LINE L1 5995 6144 -7 1985 122 31 3 chr11 135292406 135292693 -13490779 + AluSq SINE Alu 1 295 -18 2189 114 0 0 chr11 135293918 135294217 -13489255 + AluSq SINE Alu 1 299 -14 289 368 26 34 chr11 135294702 135294819 -13488653 - L2 LINE L2 -23 3249 3134 1205 281 59 45 chr11 135294905 135295397 -13488075 - LTR33 LTR ERVL -6 515 17 2433 82 0 19 chr11 135295763 135296082 -13487390 - AluSq SINE Alu 0 313 1 2501 68 0 3 chr11 135298359 135298668 -13484804 + AluY SINE Alu 3 310 -1 2162 91 0 4 chr11 135299818 135300094 -13483378 - AluSx SINE Alu 0 312 38 949 172 32 0 chr11 135300386 135300543 -13482929 + FRAM SINE Alu 1 161 -15 1700 195 0 0 chr11 135301055 135301347 -13482125 + AluJo SINE Alu 1 292 -20 295 192 27 0 chr11 135302322 135302395 -13481077 + MADE1 DNA Mariner 6 80 0 201 121 0 0 chr11 135302989 135303022 -13480450 + (TC)n Simple_repeat Simple_repeat 2 34 0 314 302 87 32 chr11 135304557 135304683 -13478789 - L2 LINE L2 -19 3253 3121 183 351 0 18 chr11 135304728 135304785 -13478687 + L2 LINE L2 3209 3264 -8 201 121 0 0 chr11 135304833 135304866 -13478606 + (TC)n Simple_repeat Simple_repeat 2 34 0 380 306 189 5 chr11 135305037 135305243 -13478229 + MIR SINE MIR 8 251 -11 258 136 0 0 chr11 135305613 135305657 -13477815 + (TG)n Simple_repeat Simple_repeat 1 44 0 222 222 0 0 chr11 135306912 135306966 -13476506 + T-rich Low_complexity Low_complexity 1 54 0 259 274 51 34 chr11 135307614 135307731 -13475741 - MIR SINE MIR 0 262 144 22 0 0 0 chr11 135310286 135310308 -13473164 + AT_rich Low_complexity Low_complexity 1 22 0 182 190 0 35 chr11 135310754 135310812 -13472660 + GA-rich Low_complexity Low_complexity 2 57 0 3652 78 6 0 chr11 135311360 135311870 -13471602 - L1P4 LINE L1 -350 5818 5306 1870 169 0 10 chr11 135312468 135312763 -13470709 - AluJo SINE Alu -20 292 1 2413 47 0 20 chr11 135314167 135314467 -13469005 - AluY SINE Alu -17 294 1 1052 304 68 93 chr11 135315203 135316182 -13467290 + L3 LINE CR1 609 1563 -14 328 328 67 22 chr11 135316265 135316399 -13467073 + L2 LINE L2 3133 3272 0 196 302 0 16 chr11 135316417 135316480 -13466992 + L2 LINE L2 2992 3053 -219 1962 152 8 8 chr11 135316626 135316982 -13466490 + L1MA4 LINE L1 5945 6300 0 2086 195 79 13 chr11 135317118 135317673 -13465799 + L1MC4a LINE L1 7216 7807 -1 2065 201 11 5 chr11 135317768 135318314 -13465158 + MER82 DNA MER2_type 7 653 0 476 380 123 22 chr11 135319049 135319701 -13463771 + L2 LINE L2 2553 3272 0 21 0 0 0 chr11 135320500 135320521 -13462951 + AT_rich Low_complexity Low_complexity 1 21 0 557 168 48 0 chr11 135321230 135321355 -13462117 + L1MA7 LINE L1 6161 6291 0 1653 184 0 26 chr11 135321493 135321798 -13461674 + AluJo SINE Alu 5 301 -11 2457 126 55 24 chr11 135321909 135322330 -13461142 + Tigger2a DNA MER2_type 1 434 0 1075 80 7 7 chr11 135322993 135323143 -13460329 + L1PB2 LINE L1 5995 6144 -7 1985 122 31 3 chr11 135323267 135323554 -13459918 + AluSq SINE Alu 1 295 -18 2198 114 0 0 chr11 135324778 135325077 -13458395 + AluSq SINE Alu 1 299 -14 289 368 26 34 chr11 135325562 135325679 -13457793 - L2 LINE L2 -23 3249 3134 1170 283 59 45 chr11 135325765 135326257 -13457215 - LTR33 LTR ERVL -6 515 17 2433 82 0 19 chr11 135326623 135326942 -13456530 - AluSq SINE Alu 0 313 1 2501 68 0 3 chr11 135329219 135329528 -13453944 + AluY SINE Alu 3 310 -1 2004 107 0 7 chr11 135330678 135330950 -13452522 - AluSx SINE Alu -1 311 42 180 0 0 0 chr11 135331959 135331979 -13451493 + (GA)n Simple_repeat Simple_repeat 1 20 0 247 256 122 11 chr11 135332592 135332682 -13450790 + MLT1I LTR MaLR 77 176 -233 253 227 191 18 chr11 135332836 135332946 -13450526 + MLT1H LTR MaLR 405 533 -16 1375 122 15 0 chr11 135333973 135334170 -13449302 - AluSg/x SINE Alu -16 294 95 26 30 0 0 chr11 135534507 135534540 -13248932 + AT_rich Low_complexity Low_complexity 1 33 0 1726 182 0 7 chr11 135534555 135534852 -13248620 - AluJb SINE Alu -15 297 3 21 0 0 0 chr11 135534981 135535002 -13248470 + AT_rich Low_complexity Low_complexity 1 21 0 407 257 183 17 chr11 135535500 135535675 -13247797 + MIR SINE MIR 59 262 0 233 245 133 31 chr11 135537372 135537470 -13246002 + MER39B LTR ERV1 64 171 -482 363 96 0 0 chr11 135537593 135537645 -13245827 + (CA)n Simple_repeat Simple_repeat 1 52 0 502 209 35 64 chr11 135538142 135538314 -13245158 - L1MC5 LINE L1 -35 7926 7760 186 250 60 12 chr11 135538980 135539064 -13244408 + MIR3 SINE MIR 77 164 -44 2345 103 3 0 chr11 135539201 135539501 -13243971 - AluSx SINE Alu -11 301 1 2182 53 0 15 chr11 135539617 135539881 -13243591 + AluY SINE Alu 39 298 -13 394 214 139 7 chr11 135539967 135540154 -13243318 - MIR SINE MIR -10 252 2 289 276 52 26 chr11 135540293 135540409 -13243063 + MIR SINE MIR 46 164 -98 314 263 0 75 chr11 135541512 135541645 -13241827 - MER5B DNA MER1_type -6 172 50 1477 146 45 0 chr11 135541669 135541937 -13241535 - L1MB3 LINE L1 -7 6176 5897 456 276 26 0 chr11 135542228 135542344 -13241128 + MIR SINE MIR 51 169 -93 240 59 0 0 chr11 135542798 135542832 -13240640 + (CA)n Simple_repeat Simple_repeat 1 34 0 450 0 0 0 chr11 135543431 135543481 -13239991 + (GGA)n Simple_repeat Simple_repeat 3 52 0 262 159 9 75 chr11 135543678 135543785 -13239687 + CT-rich Low_complexity Low_complexity 3 102 0 204 40 0 0 chr11 135544958 135544983 -13238489 + (CAAAC)n Simple_repeat Simple_repeat 2 26 0 2012 123 0 10 chr11 135545024 135545317 -13238155 - AluSx SINE Alu -22 290 1 278 336 39 10 chr11 135546087 135546191 -13237281 + MIR SINE MIR 24 130 -78 369 264 28 9 chr11 135546205 135546311 -13237161 - MER58C DNA MER1_type 0 215 108 2091 72 91 0 chr11 135547114 135547390 -13236082 - AluSp SINE Alu -11 302 2 1337 203 90 0 chr11 135547653 135547919 -13235553 + MER7A DNA MER2_type 2 289 -57 474 283 73 11 chr11 135547965 135548173 -13235299 + MIR SINE MIR 42 261 -1 350 329 18 18 chr11 135549057 135549224 -13234248 - MIR SINE MIR -37 225 59 295 277 94 42 chr11 135549294 135549507 -13233965 + L1ME3A LINE L1 5934 6157 -13 286 279 0 0 chr11 135549539 135549618 -13233854 + (TATATG)n Simple_repeat Simple_repeat 4 82 0 195 358 16 8 chr11 135550910 135551033 -13232439 + MIR SINE MIR 22 145 -63 1837 127 0 14 chr11 135551065 135551349 -13232123 - AluSx SINE Alu -19 293 14 215 31 31 0 chr11 135552534 135552566 -13230906 + (CA)n Simple_repeat Simple_repeat 2 34 0 2469 83 0 6 chr11 135553985 135554298 -13229174 + AluSq SINE Alu 1 311 -2 263 291 114 19 chr11 135555887 135556045 -13227427 + MIR SINE MIR 23 195 -67 182 235 39 0 chr11 135560648 135560699 -13222773 + MIR SINE MIR 94 146 -116 525 335 60 0 chr11 135560711 135560944 -13222528 - MIR SINE MIR -14 248 2 2654 153 18 4 chr11 135561166 135561623 -13221849 - L1MB1 LINE L1 -274 5894 5432 187 319 159 9 chr11 135564245 135564358 -13219114 - L2 LINE L2 0 3313 3184 218 335 126 0 chr11 135564557 135564763 -13218709 - L2 LINE L2 -2494 820 589 24 0 0 0 chr11 135564798 135564822 -13218650 + AT_rich Low_complexity Low_complexity 1 24 0 1589 188 68 70 chr11 135564956 135565018 -13218454 - MLT2D LTR ERVL 0 414 353 2442 135 3 6 chr11 135565018 135565382 -13218090 - THE1B LTR MaLR -1 363 1 1589 188 68 70 chr11 135565382 135565734 -13217738 - MLT2D LTR ERVL -61 353 1 237 238 12 60 chr11 135566165 135566249 -13217223 + MER96 DNA MER1_type? 8 87 -88 18220 169 36 45 chr11 135566416 135573288 -13210184 + L1PA16 LINE L1 1 6866 -3 204 327 0 0 chr11 135573473 135573525 -13209947 - L2 LINE L2 -14 3258 3207 208 271 39 65 chr11 135574807 135574962 -13208510 + L2 LINE L2 2878 3028 -244 290 194 15 0 chr11 135575185 135575252 -13208220 + GA-rich Low_complexity Low_complexity 1 68 0 212 308 0 15 chr11 135575860 135575925 -13207547 + GA-rich Low_complexity Low_complexity 1 64 0 741 239 153 0 chr11 135576717 135576926 -13206546 - MIR SINE MIR -21 241 1 1478 235 51 12 chr11 135577462 135577892 -13205580 - Zaphod DNA AcHobo 0 4031 3585 * 1982 220 107 70 chr11 135577887 135578036 -13205436 - Zaphod DNA AcHobo -3053 978 836 1246 35 0 0 chr11 135578036 135578206 -13205266 + L1PA5 LINE L1 5999 6168 0 1982 220 107 70 chr11 135578206 135578831 -13204641 - Zaphod DNA AcHobo -3195 836 174 21 36 0 0 chr11 135578965 135578993 -13204479 + AT_rich Low_complexity Low_complexity 1 28 0 208 266 31 0 chr11 135579125 135579189 -13204283 + (TATATG)n Simple_repeat Simple_repeat 5 70 0 245 278 16 56 chr11 135579547 135579673 -13203799 - L1M4c LINE L1 -3902 2482 2362 224 205 0 0 chr11 135579673 135579712 -13203760 + polypurine Low_complexity Low_complexity 3 41 0 319 343 0 7 chr11 135580343 135580483 -13202989 - HAL1 LINE L1 -978 1529 1391 645 275 36 27 chr11 135580498 135580720 -13202752 - MIR SINE MIR -26 236 13 2110 152 33 30 chr11 135580897 135581260 -13202212 - THE1B LTR MaLR 0 364 1 382 282 27 47 chr11 135581332 135581481 -13201991 + L2 LINE L2 3167 3312 -1 2175 120 35 35 chr11 135581615 135581990 -13201482 - THE1C LTR MaLR 0 375 1 2548 245 26 73 chr11 135582082 135582912 -13200560 - MER21B LTR ERV1 -58 805 15 252 184 0 0 chr11 135582912 135582961 -13200511 + (TA)n Simple_repeat Simple_repeat 1 49 0 521 92 0 13 chr11 135582998 135583074 -13200398 - AluJ/FLAM SINE Alu -217 95 21 297 89 0 0 chr11 135584237 135584282 -13199190 + (GA)n Simple_repeat Simple_repeat 2 46 0 2224 116 0 10 chr11 135584283 135584593 -13198879 + AluSx SINE Alu 6 312 0 226 266 38 13 chr11 135585085 135585164 -13198308 + HAL1b LINE L1 501 581 -767 22 0 0 0 chr11 135585524 135585546 -13197926 + AT_rich Low_complexity Low_complexity 1 22 0 2001 147 13 3 chr11 135585632 135585811 -13197661 - AluSx SINE Alu -1 311 126 795 75 0 0 chr11 135585811 135585918 -13197554 + (TTTC)n Simple_repeat Simple_repeat 2 108 0 2001 147 13 3 chr11 135585918 135586045 -13197427 - AluSx SINE Alu -186 126 2 668 211 29 40 chr11 135586086 135586209 -13197263 - MER5B DNA MER1_type -2 176 54 1850 121 26 0 chr11 135586209 135586372 -13197100 - AluSx SINE Alu -14 298 124 334 0 43 0 chr11 135586372 135586418 -13197054 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1850 121 26 0 chr11 135586418 135586526 -13196946 - AluSx SINE Alu -188 124 20 668 211 29 40 chr11 135586526 135586577 -13196895 - MER5B DNA MER1_type -124 54 4 278 300 154 46 chr11 135586584 135586959 -13196513 + L2 LINE L2 1760 2093 -1179 2605 65 0 0 chr11 135586959 135587269 -13196203 - AluY SINE Alu -1 310 1 278 300 154 46 chr11 135587269 135588068 -13195404 + L2 LINE L2 2093 3064 -208 181 319 0 0 chr11 135588193 135588240 -13195232 + L2 LINE L2 3134 3180 -92 2545 107 52 28 chr11 135588298 135588720 -13194752 + MER57B LTR ERV1 3 434 0 323 261 92 7 chr11 135588964 135589106 -13194366 + L1ME4a LINE L1 5966 6119 -2 488 277 205 29 chr11 135589114 135589509 -13193963 - MLT1K LTR MaLR -2 613 104 207 240 96 80 chr11 135589642 135589767 -13193705 + MIR SINE MIR 17 143 -65 399 312 73 10 chr11 135589789 135589994 -13193478 - L2 LINE L2 -1780 1534 1317 245 309 60 12 chr11 135591504 135591588 -13191884 + L2 LINE L2 3102 3189 -83 237 132 0 0 chr11 135592083 135592121 -13191351 + (CATTG)n Simple_repeat Simple_repeat 3 40 0 312 228 205 47 chr11 135592132 135592259 -13191213 + L2 LINE L2 3167 3313 0 22 0 0 0 chr11 135596042 135596064 -13187408 + AT_rich Low_complexity Low_complexity 1 22 0 800 146 97 14 chr11 135596661 135596805 -13186667 - MER20 DNA MER1_type 0 219 64 180 0 0 0 chr11 135597038 135597058 -13186414 + (CA)n Simple_repeat Simple_repeat 1 20 0 516 81 0 70 chr11 135597307 135597393 -13186079 + MADE1 DNA Mariner 1 80 0 23 0 0 0 chr11 135597406 135597429 -13186043 + AT_rich Low_complexity Low_complexity 1 23 0 551 280 58 5 chr11 135597433 135597622 -13185850 + MIR SINE MIR 64 262 0 229 286 158 56 chr11 135597925 135598121 -13185351 - MLT1K LTR MaLR -37 551 336 803 151 0 0 chr11 135600361 135600487 -13182985 + FLAM_C SINE Alu 1 126 -7 468 324 27 14 chr11 135602090 135602312 -13181160 - MIR SINE MIR -36 226 2 1625 232 18 60 chr11 135602774 135603286 -13180186 + L1MD3 LINE L1 4540 5029 -1117 633 165 116 0 chr11 135603287 135603408 -13180064 + AluJb SINE Alu 2 136 -176 1740 233 121 47 chr11 135603408 135604870 -13178602 + L1MD3 LINE L1 5024 6376 -1619 1712 183 47 26 chr11 135604870 135605252 -13178220 + MLT1B LTR MaLR 1 390 0 1740 233 121 47 chr11 135605252 135606057 -13177415 + L1MD3 LINE L1 6376 7120 -875 2359 139 34 3 chr11 135606057 135606410 -13177062 + THE1B LTR MaLR 1 364 0 1740 233 121 47 chr11 135606410 135606809 -13176663 + L1MD3 LINE L1 7120 7952 -43 863 94 0 0 chr11 135607311 135607428 -13176044 + L1PA8 LINE L1 6053 6169 -3 192 254 0 84 chr11 135608356 135608427 -13175045 - MER5B DNA MER1_type -7 171 107 631 65 21 0 chr11 135609555 135609648 -13173824 + (TTTC)n Simple_repeat Simple_repeat 3 97 0 23 0 0 0 chr11 135610318 135610341 -13173131 + AT_rich Low_complexity Low_complexity 1 23 0 249 33 0 0 chr11 135610678 135610708 -13172764 + (TC)n Simple_repeat Simple_repeat 2 31 0 204 167 24 0 chr11 135611149 135611191 -13172281 + A-rich Low_complexity Low_complexity 5 47 0 1884 203 8 15 chr11 135611322 135611712 -13171760 - MLT1B LTR MaLR 0 390 4 208 367 11 0 chr11 135611814 135611904 -13171568 - MIR3 SINE MIR -3 205 115 312 27 0 0 chr11 135612611 135612648 -13170824 + (CA)n Simple_repeat Simple_repeat 2 38 0 261 231 0 87 chr11 135612971 135613075 -13170397 - L2 LINE L2 -59 3254 3160 456 182 0 0 chr11 135613167 135613255 -13170217 + GA-rich Low_complexity Low_complexity 3 90 0 347 177 10 0 chr11 135615226 135615322 -13168150 + CT-rich Low_complexity Low_complexity 2 98 0 366 107 0 0 chr11 135615499 135615555 -13167917 + (CA)n Simple_repeat Simple_repeat 1 56 0 545 221 23 52 chr11 135616052 135616224 -13167248 - L1MC5 LINE L1 -35 7926 7760 186 250 60 12 chr11 135616890 135616974 -13166498 + MIR3 SINE MIR 77 164 -44 2391 90 0 0 chr11 135617111 135617411 -13166061 - AluY SINE Alu -11 300 1 362 273 8 30 chr11 135617542 135617674 -13165798 - MIR SINE MIR -114 148 20 206 245 57 0 chr11 135617701 135617754 -13165718 + L3b LINE CR1 1407 1462 -121 2393 105 0 0 chr11 135618254 135618567 -13164905 + AluSq SINE Alu 1 313 0 498 271 239 4 chr11 135619026 135619273 -13164199 + L2 LINE L2 3009 3313 0 986 195 0 0 chr11 135620571 135620770 -13162702 - FRAM SINE Alu 0 199 1 408 320 28 11 chr11 135620995 135621173 -13162299 - MIR SINE MIR -70 192 12 407 235 90 81 chr11 135623318 135623552 -13159920 - L2 LINE L2 -1 3312 3077 185 239 22 0 chr11 135623638 135623684 -13159788 - L2 LINE L2 -16 3256 3210 279 298 83 50 chr11 135626527 135626708 -13156764 - MIR SINE MIR -56 206 20 184 266 16 16 chr11 135627881 135627945 -13155527 - L2 LINE L2 -219 3053 2990 410 290 59 75 chr11 135628316 135628623 -13154849 + L2 LINE L2 3012 3313 0 603 298 21 16 chr11 135628981 135629172 -13154300 - MIR3 SINE MIR -7 201 10 199 238 218 10 chr11 135629376 135629477 -13153995 - L3 LINE CR1 -212 1365 1244 273 212 153 0 chr11 135629573 135629658 -13153814 + L3b LINE CR1 1294 1391 -192 397 288 106 24 chr11 135630113 135630283 -13153189 - MIR3 SINE MIR -9 199 16 214 255 0 0 chr11 135631704 135631755 -13151717 - MIR SINE MIR -94 114 64 31 26 0 0 chr11 135633431 135633469 -13150003 + AT_rich Low_complexity Low_complexity 1 38 0 344 237 51 40 chr11 135634640 135634817 -13148655 - Charlie7 DNA MER1_type -5 2607 2429 2140 129 50 9 chr11 135635659 135636000 -13147472 - MLT1A1 LTR MaLR -1 364 10 396 350 14 36 chr11 135639675 135639815 -13143657 - MIR3 SINE MIR -41 167 31 220 264 0 57 chr11 135642438 135642491 -13140981 - L2 LINE L2 -81 3191 3142 257 349 71 77 chr11 135642696 135642865 -13140607 - L2 LINE L2 -36 3236 3069 188 159 0 45 chr11 135642921 135642965 -13140507 + L2 LINE L2 3272 3313 0 293 231 66 22 chr11 135643335 135643426 -13140046 - L3 LINE CR1 -280 1297 1203 296 227 165 52 chr11 135644043 135644140 -13139332 - L2 LINE L2 -8 3264 3157 394 308 90 33 chr11 135645000 135645246 -13138226 + MIR SINE MIR 3 261 -1 2212 213 83 11 chr11 135645651 135646214 -13137258 + MER90 LTR ERV1 10 613 -1 987 135 7 0 chr11 135646734 135646882 -13136590 - AluJb SINE Alu -1 311 163 2341 72 0 7 chr11 135646883 135647173 -13136299 + AluY SINE Alu 1 288 -23 783 173 87 29 chr11 135647191 135647364 -13136108 + AluJb SINE Alu 121 303 -9 766 211 154 81 chr11 135649064 135649362 -13134110 + MLT1G1 LTR MaLR 81 400 -195 374 177 114 0 chr11 135649371 135649450 -13134022 + MLT1G1 LTR MaLR 502 589 -1 225 389 56 9 chr11 135649556 135649664 -13133808 - MIR SINE MIR -56 152 40 261 269 143 8 chr11 135649802 135649921 -13133551 - MIR SINE MIR -56 206 72 2316 97 37 0 chr11 135650048 135650347 -13133125 - AluSq SINE Alu -1 312 3 262 213 0 0 chr11 135651833 135651880 -13131592 + MIR SINE MIR 74 120 -142 275 364 9 9 chr11 135652426 135652536 -13130936 + L2 LINE L2 3199 3308 -5 254 178 356 22 chr11 135653957 135654047 -13129425 + MIR SINE MIR 68 187 -75 596 250 8 8 chr11 135654111 135654243 -13129229 + MIR SINE MIR 36 167 -95 404 267 23 0 chr11 135654311 135654397 -13129075 + MIR3 SINE MIR 98 185 -23 1817 161 3 56 chr11 135655282 135655604 -13127868 - AluJo SINE Alu -5 307 3 883 213 0 5 chr11 135656016 135656204 -13127268 + MER3 DNA MER1_type 23 209 0 323 294 0 12 chr11 135656349 135656434 -13127038 - L2 LINE L2 0 3313 3230 2189 126 3 0 chr11 135657291 135657600 -13125872 - AluSx SINE Alu -2 310 1 414 301 79 15 chr11 135659978 135660181 -13123291 - MIR SINE MIR -43 219 4 235 288 246 0 chr11 135660426 135660544 -13122928 + MIR3 SINE MIR 7 153 -55 22 35 0 0 chr11 135661131 135661160 -13122312 + AT_rich Low_complexity Low_complexity 1 29 0 275 364 9 9 chr11 135663740 135663850 -13119622 - L2 LINE L2 -5 3308 3199 262 213 0 0 chr11 135664397 135664444 -13119028 - MIR SINE MIR -142 120 74 2281 97 37 3 chr11 135665929 135666229 -13117243 + AluSq SINE Alu 3 312 -1 261 269 143 8 chr11 135666356 135666475 -13116997 + MIR SINE MIR 72 206 -56 225 389 56 9 chr11 135666613 135666721 -13116751 + MIR SINE MIR 40 152 -56 374 177 114 0 chr11 135666827 135666906 -13116566 - MLT1G1 LTR MaLR -1 589 502 766 211 154 81 chr11 135666915 135667213 -13116259 - MLT1G1 LTR MaLR -195 400 81 1417 183 28 81 chr11 135668914 135669083 -13114389 - AluJb SINE Alu -7 305 159 2426 71 0 10 chr11 135669083 135669378 -13114094 - AluY SINE Alu -2 309 18 1417 183 28 81 chr11 135669378 135669530 -13113942 - AluJb SINE Alu -153 159 1 2036 155 0 0 chr11 135669540 135669843 -13113629 - AluSx SINE Alu -9 303 1 405 264 84 75 chr11 135669843 135670082 -13113390 - MIR SINE MIR -11 251 11 535 278 162 0 chr11 135670160 135670358 -13113114 + MIR SINE MIR 12 241 -21 306 0 0 0 chr11 135671803 135671837 -13111635 + (TG)n Simple_repeat Simple_repeat 1 34 0 2084 144 35 50 chr11 135673706 135674102 -13109370 - MLT1B LTR MaLR 0 390 1 277 244 126 25 chr11 135674140 135674259 -13109213 - MIR SINE MIR -1 261 131 1467 172 64 0 chr11 135674477 135674601 -13108871 - AluJb SINE Alu -46 266 151 642 26 0 0 chr11 135674601 135674677 -13108795 + (TTTC)n Simple_repeat Simple_repeat 4 79 0 1467 172 64 0 chr11 135674677 135674802 -13108670 - AluJb SINE Alu -161 151 1 258 206 73 0 chr11 135675059 135675127 -13108345 - MIR SINE MIR -70 192 120 236 242 0 61 chr11 135675165 135675231 -13108241 + MIR SINE MIR 83 144 -64 196 320 124 49 chr11 135676480 135676705 -13106767 + MIR SINE MIR 20 261 -1 447 354 88 37 chr11 135676897 135677462 -13106010 - L2 LINE L2 -573 2741 2148 320 345 68 17 chr11 135677710 135677887 -13105585 - MIR SINE MIR -44 218 33 2359 112 0 0 chr11 135678076 135678381 -13105091 - AluSg SINE Alu -5 305 1 658 251 145 34 chr11 135678404 135678942 -13104530 + L2 LINE L2 2534 3140 -173 200 250 42 0 chr11 135678961 135679009 -13104463 + L2 LINE L2 3262 3311 -2 1264 143 44 99 chr11 135679940 135680231 -13103241 + MER33 DNA MER1_type 1 272 -2313 2264 102 7 0 chr11 135680231 135680526 -13102946 + AluSq SINE Alu 1 297 -16 1264 143 44 99 chr11 135680526 135680577 -13102895 + MER33 DNA MER1_type 272 324 0 303 189 11 21 chr11 135683316 135683411 -13100061 + (TG)n Simple_repeat Simple_repeat 1 94 0 335 317 18 18 chr11 135683509 135683676 -13099796 + (TG)n Simple_repeat Simple_repeat 1 167 0 242 322 133 23 chr11 135684949 135685143 -13098329 + MIR SINE MIR 41 243 -19 2045 133 10 29 chr11 135685954 135686263 -13097209 + AluSx SINE Alu 1 303 -9 252 267 0 0 chr11 135687277 135687337 -13096135 - MIR SINE MIR 0 262 203 25 0 0 0 chr11 135688196 135688221 -13095251 + AT_rich Low_complexity Low_complexity 1 25 0 407 260 25 5 chr11 135688580 135688695 -13094777 + MIR SINE MIR 50 166 -42 402 21 0 0 chr11 135689580 135689627 -13093845 + (CA)n Simple_repeat Simple_repeat 1 47 0 200 295 103 0 chr11 135691381 135691459 -13092013 + L3 LINE CR1 1341 1426 -151 1829 131 0 3 chr11 135693920 135694202 -13089270 + AluSx SINE Alu 14 294 -18 247 324 75 23 chr11 135694221 135694357 -13089115 - MIR SINE MIR -63 145 22 286 279 0 0 chr11 135695650 135695729 -13087743 + (CATATA)n Simple_repeat Simple_repeat 4 82 0 329 280 89 42 chr11 135695761 135695975 -13087497 - L1ME3A LINE L1 -13 6157 5934 409 358 30 15 chr11 135696011 135696212 -13087260 + MIR SINE MIR 22 225 -37 560 283 73 11 chr11 135697096 135697304 -13086168 - MIR SINE MIR -1 261 42 1293 207 90 0 chr11 135697350 135697616 -13085856 - MER7A DNA MER2_type -57 289 2 1945 79 90 0 chr11 135697879 135698156 -13085316 + AluSp SINE Alu 2 303 -10 367 264 28 9 chr11 135698960 135699066 -13084406 + MER58C DNA MER1_type 108 215 0 312 336 39 10 chr11 135699080 135699184 -13084288 - MIR SINE MIR -78 130 24 1884 126 0 10 chr11 135699953 135700246 -13083226 + AluSx SINE Alu 1 290 -22 204 40 0 0 chr11 135700286 135700311 -13083161 + (GTTTG)n Simple_repeat Simple_repeat 2 26 0 262 159 9 75 chr11 135701457 135701564 -13081908 + GA-rich Low_complexity Low_complexity 3 102 0 450 0 0 0 chr11 135701761 135701811 -13081661 + (TCC)n Simple_repeat Simple_repeat 3 52 0 240 59 0 0 chr11 135702398 135702432 -13081040 + (TG)n Simple_repeat Simple_repeat 1 34 0 505 276 26 0 chr11 135702885 135703001 -13080471 - MIR SINE MIR -93 169 51 180 260 40 0 chr11 135703238 135703288 -13080184 - MER5B DNA MER1_type -8 170 119 1485 142 45 0 chr11 135703292 135703560 -13079912 + L1MB3 LINE L1 5897 6176 -7 364 263 0 75 chr11 135703584 135703717 -13079755 + MER5B DNA MER1_type 50 172 -6 338 276 52 26 chr11 135704820 135704936 -13078536 - MIR SINE MIR -98 164 46 469 214 348 5 chr11 135705075 135705262 -13078210 + MIR SINE MIR 2 252 -10 2081 53 0 15 chr11 135705348 135705613 -13077859 - AluY SINE Alu -12 299 39 2206 106 3 0 chr11 135705729 135706032 -13077440 + AluSx SINE Alu 1 304 -8 219 250 60 12 chr11 135706166 135706250 -13077222 - MIR3 SINE MIR -44 164 77 212 344 112 16 chr11 135706351 135706476 -13076996 - L2 LINE L2 0 3272 3136 577 249 6 40 chr11 135706916 135707089 -13076383 + L1MC5 LINE L1 7760 7926 -35 366 107 0 0 chr11 135707586 135707642 -13075830 + (TG)n Simple_repeat Simple_repeat 1 56 0 347 177 10 0 chr11 135707819 135707915 -13075557 + GA-rich Low_complexity Low_complexity 2 98 0 475 257 183 17 chr11 135709561 135709736 -13073736 - MIR SINE MIR 0 262 59 21 0 0 0 chr11 135710233 135710254 -13073218 + AT_rich Low_complexity Low_complexity 1 21 0 1616 182 0 7 chr11 135710383 135710680 -13072792 + AluJb SINE Alu 3 297 -15 26 30 0 0 chr11 135710695 135710728 -13072744 + AT_rich Low_complexity Low_complexity 1 33 0 1732 181 0 0 chr11 135712340 135712632 -13070840 + AluJb SINE Alu 1 292 -20 2209 75 31 0 chr11 135713106 135713398 -13070074 - AluY SINE Alu -10 301 1 417 253 7 68 chr11 135713529 135713680 -13069792 - MIR SINE MIR -67 141 8 228 245 57 0 chr11 135713688 135713741 -13069731 + L3b LINE CR1 1407 1462 -121 2268 105 0 0 chr11 135714241 135714554 -13068918 + AluSq SINE Alu 1 313 0 598 271 239 4 chr11 135715013 135715260 -13068212 + L2 LINE L2 3009 3313 0 902 199 0 0 chr11 135716558 135716757 -13066715 - FRAM SINE Alu 0 199 1 481 320 28 11 chr11 135716982 135717160 -13066312 - MIR SINE MIR -70 192 12 205 261 43 43 chr11 135717431 135717500 -13065972 - L3 LINE CR1 -2 1575 1507 501 231 90 81 chr11 135719306 135719540 -13063932 - L2 LINE L2 -1 3312 3077 203 239 22 0 chr11 135719626 135719672 -13063800 - L2 LINE L2 -16 3256 3210 355 297 82 51 chr11 135722507 135722702 -13060770 - MIR SINE MIR -50 212 12 207 266 16 16 chr11 135723868 135723932 -13059540 - L2 LINE L2 -219 3053 2990 525 293 59 75 chr11 135724303 135724610 -13058862 + L2 LINE L2 3012 3313 0 669 299 20 15 chr11 135724962 135725159 -13058313 - MIR3 SINE MIR -1 207 10 209 281 172 23 chr11 135725363 135725491 -13057981 - L3 LINE CR1 -212 1365 1219 313 240 120 16 chr11 135725520 135725645 -13057827 + L3b LINE CR1 1254 1391 -192 463 288 106 24 chr11 135726100 135726270 -13057202 - MIR3 SINE MIR -9 199 16 262 221 49 139 chr11 135727624 135727746 -13055726 - MIR3 SINE MIR -39 169 59 26 30 0 0 chr11 135729224 135729257 -13054215 + AT_rich Low_complexity Low_complexity 1 33 0 31 26 0 0 chr11 135729416 135729454 -13054018 + AT_rich Low_complexity Low_complexity 1 38 0 2163 134 49 9 chr11 135730940 135731290 -13052182 - MLT1A1 LTR MaLR -1 364 1 546 16 0 0 chr11 135731344 135731407 -13052065 + (TTTTA)n Simple_repeat Simple_repeat 3 65 0 742 171 0 0 chr11 135731408 135731525 -13051947 - FLAM_C SINE Alu -25 118 2 192 233 0 0 chr11 135732728 135732771 -13050701 + MIR SINE MIR 38 80 -182 198 0 0 0 chr11 135733548 135733570 -13049902 + (CTATT)n Simple_repeat Simple_repeat 1 22 0 1533 276 100 11 chr11 135733663 135734271 -13049201 - L1MC4 LINE L1 -143 7899 7238 1647 225 121 0 chr11 135734274 135734696 -13048776 - L1MC4 LINE L1 -956 7086 6614 4091 131 56 0 chr11 135734697 135735378 -13048094 - Tigger3b DNA MER2_type 0 1231 513 1339 175 52 89 chr11 135735380 135735762 -13047710 - Tigger3b DNA MER2_type -863 368 1 409 293 84 0 chr11 135735811 135736002 -13047470 - L1MC4 LINE L1 -1378 6664 6458 215 204 45 0 chr11 135736420 135736464 -13047008 + GA-rich Low_complexity Low_complexity 1 46 0 318 26 0 0 chr11 135736593 135736632 -13046840 + (CA)n Simple_repeat Simple_repeat 1 39 0 203 327 154 0 chr11 135736963 135737073 -13046399 + L2 LINE L2 3134 3260 -12 1860 114 3 31 chr11 135737934 135738223 -13045249 + AluSx SINE Alu 2 282 -30 712 146 9 0 chr11 135738113 135738223 -13045249 + AluSg/x SINE Alu 170 304 0 184 42 0 0 chr11 135738223 135738247 -13045225 + (TAAAA)n Simple_repeat Simple_repeat 2 180 0 306 272 37 0 chr11 135740039 135740120 -13043352 - MIR SINE MIR -71 191 108 266 242 92 17 chr11 135740350 135740470 -13043002 + L2 LINE L2 3180 3308 -5 680 202 27 60 chr11 135743254 135743437 -13040035 + FRAM SINE Alu 1 176 0 402 290 40 51 chr11 135743577 135743632 -13039840 + MER63A DNA MER1_type 1 55 -1633 2995 75 5 0 chr11 135743632 135744005 -13039467 + THE1C LTR MaLR 1 375 0 402 290 40 51 chr11 135744005 135744125 -13039347 + MER63A DNA MER1_type 55 174 -36 265 285 43 30 chr11 135744904 135745016 -13038456 - MIR SINE MIR -64 144 28 214 237 21 75 chr11 135745261 135745354 -13038118 + MER5A DNA MER1_type 26 113 -76 395 231 48 113 chr11 135745465 135745651 -13037821 + MER5B DNA MER1_type 5 178 0 475 282 63 90 chr11 135745651 135745827 -13037645 + L2 LINE L2 2957 3136 -177 1923 171 10 0 chr11 135745827 135746126 -13037346 - AluJb SINE Alu -5 307 6 475 282 63 90 chr11 135746126 135746141 -13037331 + L2 LINE L2 3136 3150 -163 942 105 8 8 chr11 135746141 135746274 -13037198 - FLAM_C SINE Alu 0 133 1 475 282 63 90 chr11 135746274 135746446 -13037026 + L2 LINE L2 3150 3311 -2 2330 81 0 10 chr11 135746983 135747280 -13036192 + AluSg SINE Alu 1 294 -16 359 318 68 7 chr11 135747453 135747601 -13035871 - MIR SINE MIR -60 202 46 360 253 11 0 chr11 135747693 135747784 -13035688 + MIR SINE MIR 167 258 -4 498 204 111 31 chr11 135747796 135747958 -13035514 + MIR SINE MIR 62 236 -26 263 314 23 12 chr11 135748436 135748522 -13034950 + MIR3 SINE MIR 119 205 -3 600 259 69 69 chr11 135748738 135748970 -13034502 - MIR SINE MIR -6 256 25 370 256 24 67 chr11 135749481 135749645 -13033827 + MIR SINE MIR 20 176 -86 310 255 174 67 chr11 135750593 135751025 -13032447 + L1MC4a LINE L1 5849 6326 -1482 192 250 0 0 chr11 135751293 135751337 -13032135 + L2 LINE L2 3262 3305 -8 296 317 114 0 chr11 135751612 135751735 -13031737 - MIR SINE MIR -56 206 70 209 202 238 36 chr11 135751738 135751822 -13031650 + MIR SINE MIR 6 106 -156 235 233 167 11 chr11 135751831 135751921 -13031551 - L2 LINE L2 -1 3271 3168 294 276 0 19 chr11 135751991 135752096 -13031376 + (TA)n Simple_repeat Simple_repeat 2 104 0 653 321 54 5 chr11 135752431 135752652 -13030820 + MIR SINE MIR 18 249 -13 420 371 0 21 chr11 135757680 135757820 -13025652 - MIR3 SINE MIR -41 167 31 249 309 165 0 chr11 135760400 135760497 -13022975 - L2 LINE L2 -18 3254 3142 265 349 71 77 chr11 135760703 135760872 -13022600 - L2 LINE L2 -36 3236 3069 188 159 0 45 chr11 135760928 135760972 -13022500 + L2 LINE L2 3272 3313 0 258 242 66 22 chr11 135761342 135761433 -13022039 - L3 LINE CR1 -280 1297 1203 329 206 165 52 chr11 135762050 135762147 -13021325 - L2 LINE L2 -8 3264 3157 394 308 90 33 chr11 135763006 135763252 -13020220 + MIR SINE MIR 3 261 -1 2303 211 82 9 chr11 135763657 135764220 -13019252 + MER90 LTR ERV1 10 613 -1 1894 139 0 60 chr11 135764740 135764889 -13018583 - AluJb SINE Alu -1 311 191 2718 46 0 0 chr11 135764889 135765193 -13018279 + AluY SINE Alu 1 304 -7 1894 139 0 60 chr11 135765193 135765374 -13018098 - AluJb SINE Alu -121 191 1 344 281 8 41 chr11 135766036 135766157 -13017315 - MIR SINE MIR -134 128 12 273 309 0 52 chr11 135767261 135767358 -13016114 + L2 LINE L2 3221 3312 -1 290 252 313 0 chr11 135768926 135769073 -13014399 + MIR SINE MIR 52 244 -18 200 250 163 0 chr11 135769983 135770063 -13013409 + MIR SINE MIR 99 191 -71 2240 172 55 18 chr11 135770063 135770557 -13012915 + L1MB7 LINE L1 5661 6172 -12 186 43 0 0 chr11 135770918 135770941 -13012531 + (CCCA)n Simple_repeat Simple_repeat 4 26 0 220 222 189 0 chr11 135771855 135771925 -13011547 + MIR SINE MIR 23 106 -102 198 118 0 0 chr11 135772048 135772082 -13011390 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 268 354 146 6 chr11 135772475 135772653 -13010819 + MIR SINE MIR 48 250 -12 666 299 144 41 chr11 135773535 135774366 -13009106 + L2 LINE L2 2395 3303 -10 183 312 54 32 chr11 135774369 135774462 -13009010 + L2 LINE L2 3134 3228 -44 198 253 0 0 chr11 135774983 135775082 -13008390 + GA-rich Low_complexity Low_complexity 1 99 0 366 279 13 58 chr11 135775535 135775689 -13007783 - MIR SINE MIR -44 218 72 480 300 146 15 chr11 135775959 135776148 -13007324 - MIR SINE MIR -6 256 53 1752 140 21 0 chr11 135776148 135776427 -13007045 - AluJo SINE Alu -25 287 3 480 300 146 15 chr11 135776427 135776471 -13007001 - MIR SINE MIR -209 53 16 219 288 178 37 chr11 135778711 135778874 -13004598 - L3b LINE CR1 -205 1378 1193 315 285 86 53 chr11 135780918 135780958 -13002514 - L1 LINE L1 -2849 3297 3260 2064 131 26 10 chr11 135780958 135781263 -13002209 - AluSx SINE Alu -2 310 1 315 285 86 53 chr11 135781263 135781373 -13002099 - L1 LINE L1 -2886 3260 3142 213 366 140 7 chr11 135781722 135782064 -13001408 + L2 LINE L2 2621 3006 -266 911 111 7 39 chr11 135784552 135784705 -12998767 - Charlie3 DNA MER1_type -4 2706 2559 286 165 9 28 chr11 135784718 135784827 -12998645 + (TTATA)n Simple_repeat Simple_repeat 1 107 0 240 221 11 32 chr11 135784861 135784956 -12998516 + (TTATA)n Simple_repeat Simple_repeat 1 93 0 1084 103 4 8 chr11 135784958 135785220 -12998252 + (TATAA)n Simple_repeat Simple_repeat 1 261 0 227 281 122 50 chr11 135786347 135786486 -12996986 - MIR3 SINE MIR -59 149 1 378 198 111 0 chr11 135787085 135787166 -12996306 - 5S rRNA rRNA -31 90 1 663 290 16 5 chr11 135788050 135788236 -12995236 + MER5A DNA MER1_type 2 189 0 483 219 41 55 chr11 135788282 135788428 -12995044 - MER103 DNA DNA -20 146 3 613 273 78 55 chr11 135788731 135789039 -12994433 + L2 LINE L2 2997 3311 -2 188 329 82 0 chr11 135789109 135789182 -12994290 + MER5B DNA MER1_type 17 95 -83 2227 121 3 0 chr11 135789407 135789714 -12993758 - AluSx SINE Alu 0 312 5 293 123 15 0 chr11 135789863 135789928 -12993544 + T-rich Low_complexity Low_complexity 2 67 0 317 241 248 14 chr11 135791134 135791275 -12992197 + MIR SINE MIR 81 254 -8 194 330 68 0 chr11 135793036 135793124 -12990348 + MIR3 SINE MIR 112 205 -3 333 260 13 0 chr11 135793634 135793711 -12989761 - MER63A DNA MER1_type 0 210 133 594 289 168 0 chr11 135794094 135794302 -12989170 - MIR SINE MIR 0 262 20 252 0 0 0 chr11 135795038 135795066 -12988406 + (A)n Simple_repeat Simple_repeat 1 28 0 305 389 72 0 chr11 135795205 135795344 -12988128 + L2 LINE L2 3123 3271 -1 1322 240 79 12 chr11 135795778 135796120 -12987352 + MLT1A1 LTR MaLR 1 365 0 294 282 27 27 chr11 135797632 135797742 -12985730 + L2 LINE L2 3163 3272 0 545 292 74 7 chr11 135798741 135799025 -12984447 + L1ME4a LINE L1 5810 6112 -9 252 0 0 0 chr11 135799602 135799630 -12983842 + (CA)n Simple_repeat Simple_repeat 2 29 0 436 264 135 18 chr11 135799666 135799829 -12983643 - MIR SINE MIR -72 190 9 459 250 83 15 chr11 135800584 135800716 -12982756 - MIR3 SINE MIR -22 186 46 394 296 67 0 chr11 135801288 135801423 -12982049 + MIR SINE MIR 71 214 -48 310 356 5 69 chr11 135803846 135803981 -12979491 + MIR SINE MIR 72 193 -69 2362 88 7 0 chr11 135803981 135804277 -12979195 + AluSc SINE Alu 1 298 -11 310 356 5 69 chr11 135804277 135804329 -12979143 + MIR SINE MIR 193 247 -15 221 241 25 101 chr11 135804593 135804672 -12978800 - MIR SINE MIR -82 180 108 198 0 0 0 chr11 135804761 135804783 -12978689 + (T)n Simple_repeat Simple_repeat 1 22 0 517 282 92 88 chr11 135805171 135805465 -12978007 + L2 LINE L2 2959 3253 -19 184 139 23 47 chr11 135805432 135805475 -12977997 + MIR SINE MIR 217 258 -4 * 196 220 288 0 chr11 135805472 135805531 -12977941 - L2 LINE L2 -36 3277 3202 2012 108 106 38 chr11 135806188 135806529 -12976943 + THE1B LTR MaLR 1 364 0 2313 156 19 24 chr11 135806552 135806969 -12976503 - MSTB LTR MaLR -4 422 8 27 0 0 0 chr11 135807044 135807071 -12976401 + AT_rich Low_complexity Low_complexity 1 27 0 277 348 0 0 chr11 135807232 135807321 -12976151 - MIR3 SINE MIR -3 205 117 642 189 22 106 chr11 135807759 135807986 -12975486 - MER3 DNA MER1_type -1 208 1 288 240 90 54 chr11 135809815 135809954 -12973518 - MIR SINE MIR -64 144 2 209 273 23 45 chr11 135810397 135810485 -12972987 - MIR SINE MIR -131 131 46 210 323 76 14 chr11 135813900 135814055 -12969417 + MIR3 SINE MIR 5 190 -72 572 214 70 80 chr11 135814827 135815014 -12968458 - MIR3 SINE MIR -7 201 17 2363 102 0 3 chr11 135815121 135815425 -12968047 - AluSc SINE Alu -6 303 1 710 305 98 27 chr11 135815442 135816026 -12967446 - L1MC4a LINE L1 -1922 5886 5262 2135 132 0 19 chr11 135816096 135816414 -12967058 - AluSx SINE Alu 0 312 1 203 180 60 0 chr11 135816796 135816846 -12966626 + (TGAA)n Simple_repeat Simple_repeat 1 53 0 1723 173 7 3 chr11 135818108 135818392 -12965080 - AluJb SINE Alu -17 295 11 205 341 57 0 chr11 135818512 135818597 -12964875 + L2 LINE L2 2952 3041 -231 483 319 39 20 chr11 135818597 135818788 -12964684 + MIR SINE MIR 3 190 -72 198 0 0 0 chr11 135820238 135820260 -12963212 + (TC)n Simple_repeat Simple_repeat 1 22 0 * 294 73 0 0 chr11 135820259 135820300 -12963172 + (CA)n Simple_repeat Simple_repeat 1 41 0 487 378 6 6 chr11 135820361 135820517 -12962955 + MIR3 SINE MIR 16 171 -37 504 318 148 11 chr11 135820977 135821241 -12962231 + L2 LINE L2 3013 3312 -1 186 219 172 16 chr11 135821399 135821463 -12962009 - MIR SINE MIR -62 146 73 462 208 115 15 chr11 135821520 135821650 -12961822 - MIR SINE MIR -98 164 22 191 114 29 0 chr11 135825401 135825436 -12958036 + CT-rich Low_complexity Low_complexity 2 37 0 195 42 0 0 chr11 135828085 135828109 -12955363 + (A)n Simple_repeat Simple_repeat 1 24 0 207 0 0 0 chr11 135828282 135828305 -12955167 + (A)n Simple_repeat Simple_repeat 1 23 0 345 257 0 38 chr11 135829616 135829721 -12953751 + (CGTG)n Simple_repeat Simple_repeat 3 103 0 505 211 121 60 chr11 135831411 135831577 -12951895 - MIR SINE MIR -25 237 62 825 177 110 0 chr11 135831584 135831748 -12951724 - MIR SINE MIR -34 228 47 180 0 0 0 chr11 135832487 135832507 -12950965 + (C)n Simple_repeat Simple_repeat 1 20 0 261 0 0 0 chr11 135832532 135832561 -12950911 + (A)n Simple_repeat Simple_repeat 1 29 0 21 0 0 0 chr11 135832561 135832582 -12950890 + AT_rich Low_complexity Low_complexity 1 21 0 277 313 21 31 chr11 135833553 135833649 -12949823 + MIR SINE MIR 27 121 -87 249 198 33 11 chr11 135834598 135834689 -12948783 + CT-rich Low_complexity Low_complexity 4 96 0 402 21 0 0 chr11 135835075 135835122 -12948350 + (TG)n Simple_repeat Simple_repeat 1 47 0 383 316 16 75 chr11 135836423 135836610 -12946862 + MIR SINE MIR 37 212 -50 191 346 129 41 chr11 135836612 135836907 -12946565 - L2 LINE L2 -3 3310 2990 180 288 25 51 chr11 135837058 135837176 -12946296 - L2 LINE L2 -203 3110 2996 762 313 124 31 chr11 135837199 135837899 -12945573 - L2 LINE L2 -623 2691 1927 295 320 32 82 chr11 135838788 135839007 -12944465 - MIR SINE MIR -30 232 25 393 357 88 35 chr11 135840655 135841028 -12942444 - L2 LINE L2 -9 3263 2871 206 167 24 0 chr11 135843822 135843864 -12939608 + CT-rich Low_complexity Low_complexity 1 43 0 34 0 0 0 chr11 135846109 135846143 -12937329 + AT_rich Low_complexity Low_complexity 1 34 0 961 53 24 29 chr11 135846774 135846944 -12936528 + (TTTC)n Simple_repeat Simple_repeat 3 171 0 226 283 19 0 chr11 135846944 135846997 -12936475 + polypyrimidine Low_complexity Low_complexity 6 59 0 398 276 21 41 chr11 135847263 135847408 -12936064 - MIR SINE MIR -8 254 113 251 164 41 41 chr11 135848197 135848270 -12935202 - L1MD3 LINE L1 -2 7993 7921 585 237 160 0 chr11 135848682 135848838 -12934634 + MER5A DNA MER1_type 9 189 0 210 259 0 0 chr11 135848842 135848900 -12934572 + A-rich Low_complexity Low_complexity 1 58 0 182 214 48 0 chr11 135849357 135849399 -12934073 - L2 LINE L2 -7 3265 3222 370 248 141 34 chr11 135849416 135849650 -12933822 - MIR SINE MIR 0 262 4 234 0 0 0 chr11 135851634 135851660 -12931812 + (T)n Simple_repeat Simple_repeat 1 26 0 207 323 9 91 chr11 135851754 135851990 -12931482 - L2 LINE L2 -2 3311 3019 2055 130 10 0 chr11 135852156 135852456 -12931016 - AluSq SINE Alu -10 303 1 267 298 32 0 chr11 135852916 135853010 -12930462 + L1MC/D LINE L1 5711 5807 -2001 234 274 294 0 chr11 135854139 135854241 -12929231 + MIR3 SINE MIR 25 156 -52 327 254 49 84 chr11 135854279 135854421 -12929051 - L2 LINE L2 -8 3305 3169 423 316 72 72 chr11 135854690 135855149 -12928323 - L2 LINE L2 0 3272 2814 411 259 80 0 chr11 135856249 135856361 -12927111 + L2 LINE L2 3192 3312 -1 2080 133 33 6 chr11 135856407 135856508 -12926964 + MER44D DNA MER2_type 1 98 -2393 180 0 0 0 chr11 135856508 135856528 -12926944 + (GA)n Simple_repeat Simple_repeat 1 20 0 2080 133 33 6 chr11 135856528 135856756 -12926716 + MER44D DNA MER2_type 98 609 0 187 392 81 0 chr11 135858469 135858617 -12924855 + MIR3 SINE MIR 33 192 -16 1704 109 59 0 chr11 135859549 135859787 -12923685 - AluSx SINE Alu -2 310 59 2120 104 7 3 chr11 135859787 135860075 -12923397 - AluSx SINE Alu -23 289 1 25 0 0 0 chr11 135860084 135860109 -12923363 + AT_rich Low_complexity Low_complexity 1 25 0 351 0 0 0 chr11 135860292 135860331 -12923141 + (T)n Simple_repeat Simple_repeat 1 39 0 55 48 0 0 chr11 135860343 135860426 -12923046 + GC_rich Low_complexity Low_complexity 1 83 0 2326 92 7 0 chr11 135860553 135860859 -12922613 - AluSx SINE Alu -4 308 1 199 240 0 20 chr11 135861107 135861157 -12922315 + L2 LINE L2 3265 3313 0 21 0 0 0 chr11 135861289 135861310 -12922162 + AT_rich Low_complexity Low_complexity 1 21 0 473 294 25 25 chr11 135862200 135862360 -12921112 - MIR SINE MIR -85 177 18 811 258 137 36 chr11 135862853 135863210 -12920262 - MLT1I LTR MaLR 0 409 17 206 214 14 100 chr11 135863216 135863286 -12920186 - L2 LINE L2 -50 3222 3159 308 303 63 21 chr11 135863914 135864056 -12919416 - MIR3 SINE MIR -40 168 21 604 264 66 62 chr11 135864942 135865200 -12918272 + MIR SINE MIR 2 260 -2 1260 142 19 0 chr11 135865368 135865579 -12917893 - L1MA4 LINE L1 0 6300 6086 22 0 0 0 chr11 135866367 135866389 -12917083 + AT_rich Low_complexity Low_complexity 1 22 0 233 315 108 13 chr11 135866700 135866895 -12916577 + MIR SINE MIR 1 217 -45 36 0 0 0 chr11 135868317 135868353 -12915119 + AT_rich Low_complexity Low_complexity 1 36 0 22 99 0 0 chr11 135868644 135868715 -12914757 + AT_rich Low_complexity Low_complexity 1 71 0 255 307 168 0 chr11 135868724 135868861 -12914611 - HAL1b LINE L1 -437 911 752 740 312 146 15 chr11 135869316 135869693 -12913779 - HAL1 LINE L1 -718 1789 1463 2795 6 0 25 chr11 135869693 135870012 -12913460 - AluYa5 SINE Alu 0 311 1 740 312 146 15 chr11 135870012 135870285 -12913187 - HAL1 LINE L1 -1044 1463 1054 920 269 88 55 chr11 135870292 135870689 -12912783 - L2 LINE L2 0 3313 2904 310 313 98 0 chr11 135871577 135871689 -12911783 - L3 LINE CR1 -210 1367 1245 419 255 90 95 chr11 135871752 135871952 -12911520 - L3 LINE CR1 -62 1515 1317 2277 101 7 0 chr11 135872695 135873001 -12910471 + AluSp SINE Alu 2 309 -4 180 259 268 36 chr11 135873658 135873770 -12909702 - MIR3 SINE MIR -34 174 37 578 249 79 18 chr11 135873906 135874135 -12909337 + L1ME4a LINE L1 5878 6120 -1 1640 164 54 13 chr11 135874396 135874425 -12909047 - AluJb SINE Alu 0 312 286 231 36 0 0 chr11 135874425 135874453 -12909019 + (TC)n Simple_repeat Simple_repeat 2 29 0 1640 164 54 13 chr11 135874453 135874721 -12908751 - AluJb SINE Alu -26 286 3 590 164 0 16 chr11 135875750 135875878 -12907594 + (TCCA)n Simple_repeat Simple_repeat 3 128 0 410 303 90 41 chr11 135875891 135876158 -12907314 - L2 LINE L2 -4 3309 3030 212 268 93 21 chr11 135876794 135876891 -12906581 + MIR3 SINE MIR 105 208 0 429 283 80 40 chr11 135877593 135877844 -12905628 - MIR SINE MIR -1 261 1 218 271 8 101 chr11 135878086 135878215 -12905257 - L2 LINE L2 -17 3255 3139 4854 197 18 13 chr11 135880342 135881625 -12901847 - L1MB4 LINE L1 0 6180 4894 243 189 0 0 chr11 135882101 135882138 -12901334 + L2 LINE L2 3239 3275 -38 194 367 11 0 chr11 135885076 135885166 -12898306 + MIR SINE MIR 63 153 -109 1236 27 5 38 chr11 135885546 135885677 -12897795 + (TTTC)n Simple_repeat Simple_repeat 1 306 0 1236 27 5 38 chr11 135885677 135885863 -12897609 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 24 32 0 0 chr11 135885984 135886015 -12897457 + GC_rich Low_complexity Low_complexity 1 31 0 333 155 0 0 chr11 135886036 135886094 -12897378 + A-rich Low_complexity Low_complexity 1 58 0 2280 107 0 0 chr11 135887495 135887795 -12895677 - AluSx SINE Alu -12 300 1 588 272 33 13 chr11 135887807 135887975 -12895497 - MIR SINE MIR -62 146 16 252 327 65 0 chr11 135888072 135888179 -12895293 - L2 LINE L2 -3 3310 3197 871 148 109 16 chr11 135888751 135888934 -12894538 - MER96B DNA MER1_type? -209 208 9 233 333 76 8 chr11 135888950 135889082 -12894390 - L2 LINE L2 -726 2588 2448 2280 97 0 26 chr11 135889503 135889814 -12893658 + AluSg SINE Alu 1 303 -7 547 241 95 13 chr11 135890779 135890937 -12892535 + MIR3 SINE MIR 16 186 -22 284 0 0 27 chr11 135892412 135892449 -12891023 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1283 201 11 95 chr11 135892473 135892852 -12890620 + MLT1A1 LTR MaLR 19 365 0 450 280 35 7 chr11 135893738 135893881 -12889591 - MIR SINE MIR -50 212 66 2445 74 0 0 chr11 135893884 135894181 -12889291 + AluY SINE Alu 1 297 -14 2263 119 0 3 chr11 135895005 135895316 -12888156 - AluSx SINE Alu -2 310 1 872 244 39 5 chr11 135896435 135896640 -12886832 - MER20 DNA MER1_type -3 216 5 210 71 0 0 chr11 135896694 135896722 -12886750 + (T)n Simple_repeat Simple_repeat 1 28 0 2489 66 3 19 chr11 135896935 135897252 -12886220 - AluSx SINE Alu 0 312 1 618 173 0 10 chr11 135898267 135898371 -12885101 - FLAM_A SINE Alu -17 125 23 351 311 53 8 chr11 135898390 135898522 -12884950 - MIR SINE MIR -111 151 14 180 97 0 0 chr11 135899973 135900004 -12883468 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 270 0 0 0 chr11 135900307 135900337 -12883135 + (T)n Simple_repeat Simple_repeat 1 30 0 2242 113 0 19 chr11 135901218 135901536 -12881936 - AluSx SINE Alu 0 312 1 2198 48 45 4 chr11 135902141 135902409 -12881063 + AluY SINE Alu 1 279 -32 245 0 0 0 chr11 135902409 135902438 -12881034 + Alu SINE Alu 252 280 -22 344 57 0 0 chr11 135902465 135902518 -12880954 + Alu SINE Alu 249 301 0 24 53 0 0 chr11 135954251 135954289 -12829183 + AT_rich Low_complexity Low_complexity 1 38 0 257 321 95 15 chr11 135954741 135954878 -12828594 + MIR3 SINE MIR 57 204 -4 382 201 63 149 chr11 135956153 135956327 -12827145 + MIR3 SINE MIR 42 200 -8 263 347 85 28 chr11 135959399 135959633 -12823839 + L2 LINE L2 2768 3010 -262 186 43 0 0 chr11 135960093 135960116 -12823356 + (TTC)n Simple_repeat Simple_repeat 2 24 0 182 122 98 0 chr11 135960152 135960193 -12823279 + L2 LINE L2 1684 1728 -1586 297 351 0 45 chr11 135960243 135960397 -12823075 + L2 LINE L2 3167 3313 0 1682 199 58 35 chr11 135961977 135962429 -12821043 + LTR37B LTR ERV1 6 467 -1 296 283 52 52 chr11 135962899 135963072 -12820400 + MER31-int LTR ERV1 1042 1214 -3722 33 25 0 0 chr11 135963158 135963198 -12820274 + AT_rich Low_complexity Low_complexity 1 40 0 200 33 0 33 chr11 135963737 135963767 -12819705 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 714 24 0 0 chr11 135963766 135963850 -12819622 + (GA)n Simple_repeat Simple_repeat 2 85 0 406 282 59 66 chr11 135965066 135965353 -12818119 + MER31-int LTR ERV1 3336 3620 -1316 250 182 0 36 chr11 135965393 135965448 -12818024 - MER58A DNA MER1_type -39 185 133 644 219 0 9 chr11 135965497 135965611 -12817861 - MER58A DNA MER1_type 0 118 6 191 345 72 84 chr11 135966493 135966838 -12816634 + L2 LINE L2 2920 3260 -12 37 52 0 0 chr11 135966854 135966912 -12816560 + AT_rich Low_complexity Low_complexity 1 58 0 1547 258 23 30 chr11 135967364 135967799 -12815673 + MER20B DNA MER1_type 43 474 -309 295 419 31 12 chr11 135967922 135968082 -12815390 + L2 LINE L2 3102 3264 -8 385 338 7 0 chr11 135968101 135968240 -12815232 - L2 LINE L2 -1 3312 3173 1451 217 210 41 chr11 135968370 135968831 -12814641 - MLT1H LTR MaLR 0 549 11 374 285 120 58 chr11 135968840 135969264 -12814208 - L2 LINE L2 -252 3020 2565 533 336 9 44 chr11 135969316 135969545 -12813927 + MIR SINE MIR 41 261 -1 226 360 153 0 chr11 135970935 135971085 -12812387 + MIR SINE MIR 12 184 -78 * 300 283 136 83 chr11 135971056 135971430 -12812042 + L2 LINE L2 2920 3313 0 226 253 67 73 chr11 135971524 135971702 -12811770 + MIR SINE MIR 45 221 -41 327 299 68 6 chr11 135972804 135972927 -12810545 - MIR SINE MIR -63 145 20 379 254 55 18 chr11 135973094 135973204 -12810268 - L2 LINE L2 0 3313 3200 435 152 0 0 chr11 135973498 135973577 -12809895 + (TA)n Simple_repeat Simple_repeat 1 79 0 291 328 24 24 chr11 135974651 135974776 -12808696 + MIR SINE MIR 16 140 -122 241 300 111 0 chr11 135974863 135974953 -12808519 + L2 LINE L2 2702 2801 -513 2174 106 0 7 chr11 135974988 135975302 -12808170 + AluSc SINE Alu 1 309 0 262 255 122 114 chr11 135975451 135975558 -12807914 + L2 LINE L2 3013 3118 -195 7432 54 6 0 chr11 135975558 135976792 -12806680 - L1PA6 LINE L1 0 6154 4899 1940 134 0 17 chr11 135976801 135977091 -12806381 - AluSx SINE Alu -27 285 1 262 255 122 114 chr11 135977091 135977244 -12806228 + L2 LINE L2 3125 3285 -28 3492 83 7 0 chr11 135977370 135977818 -12805654 - L1PA8 LINE L1 0 6172 5722 652 283 28 49 chr11 135979213 135979460 -12804012 + MIR SINE MIR 21 262 0 620 84 0 32 chr11 135979698 135979793 -12803679 - L1PA4 LINE L1 -3 6152 6061 3589 122 13 6 chr11 135981476 135982011 -12801461 + THE1-int LTR MaLR 975 1513 -67 1951 110 17 17 chr11 135982012 135982313 -12801159 + AluSq SINE Alu 1 301 -12 274 174 22 0 chr11 135982314 135982360 -12801112 + L1M4 LINE L1 5432 5478 -700 1457 151 0 0 chr11 135982364 135982576 -12800896 - AluJb SINE Alu -100 212 1 1044 182 6 0 chr11 135982766 135982931 -12800541 + MER1B DNA MER1_type 1 166 -131 552 291 35 30 chr11 135983458 135983661 -12799811 + MIR SINE MIR 13 216 -46 548 307 104 58 chr11 135983980 135984394 -12799078 + L3 LINE CR1 931 1363 -214 287 245 7 151 chr11 135984409 135984548 -12798924 + L2 LINE L2 3195 3313 0 375 368 70 5 chr11 135984555 135984740 -12798732 + L3 LINE CR1 1380 1576 -1 180 0 0 0 chr11 135985158 135985178 -12798294 + (T)n Simple_repeat Simple_repeat 1 20 0 319 403 63 4 chr11 135985651 135985889 -12797583 + MIR SINE MIR 5 256 -6 24 77 0 0 chr11 135985996 135986048 -12797424 + AT_rich Low_complexity Low_complexity 1 52 0 231 292 77 62 chr11 135986422 135986552 -12796920 - MIR SINE MIR -90 172 41 451 237 30 37 chr11 135986696 135986831 -12796641 + MER94 DNA DNA 1 134 0 206 391 18 18 chr11 135987398 135987508 -12795964 + MIR SINE MIR 16 125 -83 222 105 0 0 chr11 135987511 135987549 -12795923 + (TCTCTG)n Simple_repeat Simple_repeat 3 40 0 2415 99 3 0 chr11 135987602 135987914 -12795558 + AluSp SINE Alu 1 313 0 1915 122 79 0 chr11 135987946 135988249 -12795223 - MER7A DNA MER2_type -20 326 2 356 100 50 0 chr11 135988249 135988329 -12795143 + (TA)n Simple_repeat Simple_repeat 2 85 0 2013 164 23 0 chr11 135988348 135988701 -12794771 - L1M4 LINE L1 -409 5769 5409 303 49 0 0 chr11 135989349 135989390 -12794082 + (TG)n Simple_repeat Simple_repeat 1 41 0 1724 243 87 30 chr11 135989806 135990252 -12793220 - MLT2B3 LTR ERVL 0 554 102 206 354 83 28 chr11 135990322 135990466 -12793006 + L2 LINE L2 2936 3087 -226 310 319 88 100 chr11 135990498 135990827 -12792645 - L2 LINE L2 -17 3255 2931 229 271 209 16 chr11 135990986 135991115 -12792357 + L2 LINE L2 3160 3313 0 243 125 0 0 chr11 135992396 135992436 -12791036 + (TG)n Simple_repeat Simple_repeat 1 40 0 234 313 146 7 chr11 135992642 135992786 -12790686 + L2 LINE L2 2888 3051 -221 664 311 45 3 chr11 135994509 135994944 -12788528 + MER115 DNA AcHobo 189 693 0 280 273 52 0 chr11 135995114 135995191 -12788281 - L2 LINE L2 -8 3305 3225 257 315 146 0 chr11 135995479 135995609 -12787863 + MIR SINE MIR 65 213 -49 252 299 31 71 chr11 135997361 135997488 -12785984 + L2 LINE L2 3151 3272 0 297 293 87 40 chr11 135998158 135998308 -12785164 - L2 LINE L2 -1 3312 3156 337 324 135 5 chr11 135998730 135998915 -12784557 + MIR SINE MIR 31 239 -23 318 106 0 0 chr11 135999393 135999440 -12784032 + (TC)n Simple_repeat Simple_repeat 2 48 0 25 0 0 0 chr11 135999524 135999549 -12783923 + AT_rich Low_complexity Low_complexity 1 25 0 193 244 0 0 chr11 136000085 136000126 -12783346 - MER5B DNA MER1_type 0 178 138 365 259 0 37 chr11 136000126 136000234 -12783238 - MER5B DNA MER1_type 0 178 75 2603 93 24 3 chr11 136000797 136001174 -12782298 + MLT2A1 LTR ERVL 1 385 -59 189 0 0 0 chr11 136001174 136001195 -12782277 + (TA)n Simple_repeat Simple_repeat 1 21 0 276 254 169 31 chr11 136001219 136001349 -12782123 - MIR SINE MIR -30 232 85 424 310 17 35 chr11 136001829 136002003 -12781469 - MIR SINE MIR -46 216 46 989 220 23 5 chr11 136002675 136002889 -12780583 - MER20 DNA MER1_type 0 219 2 1334 136 0 0 chr11 136003134 136003355 -12780117 + L1MA2 LINE L1 6083 6303 -1 23 54 0 0 chr11 136003356 136003393 -12780079 + AT_rich Low_complexity Low_complexity 1 37 0 508 278 125 26 chr11 136003408 136003575 -12779897 + HAL1 LINE L1 1112 1261 -1246 1593 170 6 65 chr11 136003575 136003898 -12779574 + AluJo SINE Alu 6 309 -3 508 278 125 26 chr11 136003898 136004274 -12779198 + HAL1 LINE L1 1261 1709 -798 271 349 141 17 chr11 136004346 136004693 -12778779 - MLT1L LTR MaLR -76 539 150 376 256 237 6 chr11 136004781 136004937 -12778535 + HAL1 LINE L1 1707 1898 -609 621 204 93 48 chr11 136005413 136005682 -12777790 + HAL1 LINE L1 2219 2499 -8 24 32 0 0 chr11 136005685 136005716 -12777756 + AT_rich Low_complexity Low_complexity 1 31 0 1522 209 13 54 chr11 136006994 136007381 -12776091 + MLT1A2 LTR MaLR 4 374 0 5429 46 0 0 chr11 136007635 136008336 -12775136 - L1PA5 LINE L1 -854 5292 4592 6764 37 1 42 chr11 136008336 136009217 -12774255 + L1PA5 LINE L1 5302 6147 -7 196 123 0 53 chr11 136009225 136009282 -12774190 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 363 307 30 10 chr11 136009417 136009518 -12773954 + L2 LINE L2 3191 3293 -20 188 309 94 54 chr11 136009592 136009741 -12773731 + MIR SINE MIR 32 186 -76 216 229 84 12 chr11 136009812 136009895 -12773577 - L2 LINE L2 -100 3213 3125 544 317 85 60 chr11 136009902 136010221 -12773251 + L2 LINE L2 2648 2974 -340 521 214 63 32 chr11 136010260 136010386 -12773086 + L2 LINE L2 3182 3311 -2 1985 139 0 0 chr11 136010482 136010755 -12772717 + AluSx SINE Alu 7 279 -33 252 0 0 0 chr11 136010755 136010783 -12772689 + (CA)n Simple_repeat Simple_repeat 1 28 0 206 281 94 31 chr11 136010811 136010907 -12772565 - L3 LINE CR1 -106 1471 1370 4257 171 22 31 chr11 136010913 136011155 -12772317 + L1MB3 LINE L1 5283 5526 -657 1978 141 85 15 chr11 136011155 136011495 -12771977 + THE1B LTR MaLR 1 364 0 4257 171 22 31 chr11 136011495 136012161 -12771311 + L1MB3 LINE L1 5526 6183 0 215 309 128 68 chr11 136012162 136012411 -12771061 - L3 LINE CR1 -207 1370 1107 288 200 10 110 chr11 136012543 136012643 -12770829 + MER103 DNA DNA 44 133 -33 752 247 80 33 chr11 136013089 136013389 -12770083 - MER46C DNA MER2_type 0 338 25 261 318 127 8 chr11 136013814 136013940 -12769532 + MIR3 SINE MIR 34 174 -34 194 347 53 0 chr11 136014769 136014844 -12768628 - MIR SINE MIR -85 123 45 23 68 0 0 chr11 136015726 136015770 -12767702 + AT_rich Low_complexity Low_complexity 1 44 0 2068 146 33 28 chr11 136015789 136016151 -12767321 + THE1B LTR MaLR 1 364 0 593 158 48 20 chr11 136017351 136017497 -12765975 - MER105 DNA DNA -19 185 36 46 19 0 0 chr11 136017503 136017556 -12765916 + AT_rich Low_complexity Low_complexity 1 53 0 945 204 0 6 chr11 136017720 136017892 -12765580 - AluJo SINE Alu -20 292 122 854 211 72 75 chr11 136017921 136018309 -12765163 - MER114 LTR ERV -40 608 222 1302 169 20 93 chr11 136018316 136018617 -12764855 + AluJb SINE Alu 1 279 -33 222 37 0 0 chr11 136018620 136018647 -12764825 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 459 240 105 0 chr11 136018672 136018843 -12764629 - MER114 LTR ERV -459 189 1 639 187 24 8 chr11 136019092 136019215 -12764257 - FLAM_A SINE Alu -8 125 1 22 0 0 0 chr11 136020652 136020674 -12762798 + AT_rich Low_complexity Low_complexity 1 22 0 284 309 119 24 chr11 136020702 136020828 -12762644 + MIR3 SINE MIR 17 154 -54 204 357 38 38 chr11 136022768 136022978 -12760494 - L2 LINE L2 -836 2478 2269 325 255 53 11 chr11 136023075 136023169 -12760303 - L1MEd LINE L1 -6014 105 8 1231 187 0 9 chr11 136023536 136023750 -12759722 + AluJo SINE Alu 1 212 -100 180 0 0 0 chr11 136023752 136023772 -12759700 + (GA)n Simple_repeat Simple_repeat 1 20 0 234 62 0 0 chr11 136025134 136025166 -12758306 + (CA)n Simple_repeat Simple_repeat 1 32 0 204 97 0 0 chr11 136025169 136025200 -12758272 + (CAGAGA)n Simple_repeat Simple_repeat 4 34 0 294 370 39 0 chr11 136025347 136025474 -12757998 - MIR SINE MIR -34 228 97 786 310 17 4 chr11 136025491 136025730 -12757742 + MIR SINE MIR 12 253 -9 207 247 55 41 chr11 136025749 136025822 -12757650 - MIR SINE MIR -169 93 20 245 252 36 99 chr11 136025862 136025973 -12757499 + MIR SINE MIR 86 189 -73 199 241 124 51 chr11 136027866 136028003 -12755469 + L2 LINE L2 3163 3309 -4 298 317 78 14 chr11 136029789 136029931 -12753541 + MIR3 SINE MIR 58 208 0 454 260 79 28 chr11 136030244 136030267 -12753205 + MER58A DNA MER1_type 39 59 -2361 1700 194 58 0 chr11 136030267 136030596 -12752876 + MER7A DNA MER2_type 1 346 0 454 260 79 28 chr11 136030596 136030749 -12752723 + MER58A DNA MER1_type 59 224 0 284 317 78 58 chr11 136030769 136031062 -12752410 - L3 LINE CR1 -28 1549 1251 528 240 152 12 chr11 136031546 136031717 -12751755 + MIR SINE MIR 27 221 -41 2508 149 26 9 chr11 136032684 136033107 -12750365 - MSTB1 LTR MaLR -2 430 1 214 284 14 40 chr11 136034378 136034452 -12749020 - L2 LINE L2 0 3272 3201 457 280 24 0 chr11 136034748 136034873 -12748599 - MER58A DNA MER1_type 0 224 97 293 284 0 14 chr11 136035280 136035354 -12748118 + MIR SINE MIR 17 89 -173 381 244 105 0 chr11 136035370 136035456 -12748016 - MER58A DNA MER1_type -12 95 1 440 340 63 5 chr11 136035795 136036001 -12747471 - LTR33 LTR ERVL 0 521 304 342 282 51 86 chr11 136036337 136036688 -12746784 + MLT1I LTR MaLR 69 407 -2 443 267 107 27 chr11 136037035 136037185 -12746287 + MIR SINE MIR 17 178 -84 2149 120 0 0 chr11 136037209 136037493 -12745979 - AluSq SINE Alu -29 284 1 203 337 24 60 chr11 136037840 136038006 -12745466 + MIR SINE MIR 51 210 -52 2452 54 7 0 chr11 136038766 136039062 -12744410 + AluY SINE Alu 1 298 -13 27 49 0 0 chr11 136040515 136040556 -12742916 + AT_rich Low_complexity Low_complexity 1 41 0 365 342 54 16 chr11 136041837 136042021 -12741451 + L2 LINE L2 2566 2756 -558 797 264 18 76 chr11 136042503 136042779 -12740693 + MIR SINE MIR 3 262 0 26 50 0 0 chr11 136045047 136045087 -12738385 + AT_rich Low_complexity Low_complexity 1 40 0 4838 161 23 46 chr11 136045118 136045317 -12738155 - L1MA9 LINE L1 0 6312 6110 2364 85 3 0 chr11 136045317 136045612 -12737860 + AluSc SINE Alu 1 296 -13 4838 161 23 46 chr11 136045612 136046382 -12737090 - L1MA9 LINE L1 -202 6110 5366 338 320 167 18 chr11 136046584 136046812 -12736660 + MIR SINE MIR 1 262 0 391 323 12 18 chr11 136046863 136047030 -12736442 + MARNA DNA Mariner 286 451 -135 2412 91 3 0 chr11 136047309 136047616 -12735856 + AluSp SINE Alu 1 308 -5 270 330 33 0 chr11 136048073 136048164 -12735308 + MIR SINE MIR 14 107 -155 440 283 29 7 chr11 136048201 136048339 -12735133 + L2 LINE L2 3121 3261 -11 207 369 141 20 chr11 136048394 136048592 -12734880 + L2 LINE L2 2600 2821 -493 333 0 0 0 chr11 136048845 136048882 -12734590 + (TG)n Simple_repeat Simple_repeat 2 38 0 192 40 0 0 chr11 136049053 136049078 -12734394 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 295 280 159 0 chr11 136049525 136049632 -12733840 + MIR3 SINE MIR 84 207 -1 258 424 8 0 chr11 136052692 136052817 -12730655 + L2 LINE L2 3141 3266 -6 37 23 0 0 chr11 136053128 136053172 -12730300 + AT_rich Low_complexity Low_complexity 1 44 0 438 258 119 92 chr11 136053256 136053299 -12730173 + L1ME4a LINE L1 5521 5561 -560 3591 126 11 4 chr11 136053299 136053829 -12729643 - L1PA14 LINE L1 0 6161 5628 438 258 119 92 chr11 136053829 136054196 -12729276 + L1ME4a LINE L1 5561 5942 -179 315 239 138 14 chr11 136054201 136054339 -12729133 + L1ME4a LINE L1 5967 6121 0 748 264 50 41 chr11 136054848 136055068 -12728404 - MIR SINE MIR -27 235 14 517 298 99 15 chr11 136055814 136056086 -12727386 - LTR33 LTR ERVL -226 295 1 1298 99 0 0 chr11 136057863 136058034 -12725438 - AluSg/x SINE Alu -10 302 132 224 345 101 34 chr11 136058183 136058302 -12725170 - MIR SINE MIR -60 148 22 290 307 127 36 chr11 136059658 136059824 -12723648 + MER5A DNA MER1_type 9 189 0 22 0 0 0 chr11 136059896 136059918 -12723554 + AT_rich Low_complexity Low_complexity 1 22 0 2354 88 3 7 chr11 136060042 136060349 -12723123 - AluSp SINE Alu -7 306 1 226 304 40 16 chr11 136060559 136060684 -12722788 + L2 LINE L2 3119 3246 -67 311 268 12 12 chr11 136062557 136062639 -12720833 - MIR SINE MIR -119 143 62 2151 134 3 3 chr11 136063905 136064211 -12719261 + AluSx SINE Alu 1 306 -6 324 294 12 0 chr11 136064321 136064406 -12719066 - MIR3 SINE MIR -21 187 102 206 289 56 67 chr11 136064990 136065080 -12718392 - MER5A DNA MER1_type -40 149 61 481 171 68 117 chr11 136065128 136065242 -12718230 - L1MD3 LINE L1 -5 7990 7891 2997 167 45 8 chr11 136065242 136065769 -12717703 - L1MB3 LINE L1 -7 6176 5630 481 171 68 117 chr11 136065769 136065876 -12717596 - L1MD3 LINE L1 -104 7891 7780 25 0 0 0 chr11 136066226 136066251 -12717221 + AT_rich Low_complexity Low_complexity 1 25 0 2427 93 0 6 chr11 136066673 136066985 -12716487 + AluSg SINE Alu 1 310 0 3947 116 25 0 chr11 136067615 136067821 -12715651 + L1PB1 LINE L1 5574 5773 -378 189 0 0 0 chr11 136067821 136067842 -12715630 + (TG)n Simple_repeat Simple_repeat 2 22 0 3947 116 25 0 chr11 136067842 136068197 -12715275 + L1PB1 LINE L1 5773 6149 -2 1988 143 173 16 chr11 136069930 136070300 -12713172 + MSTA LTR MaLR 1 428 0 9889 124 61 34 chr11 136070302 136071838 -12711634 + MSTA-int LTR MaLR 3 1580 0 1961 158 174 11 chr11 136071838 136072206 -12711266 + MSTA LTR MaLR 1 428 0 1660 192 26 26 chr11 136072375 136072714 -12710758 - MER44D DNA MER2_type 0 609 1 1621 149 36 0 chr11 136072837 136073139 -12710333 - MER33 DNA MER1_type -2 322 10 610 299 49 42 chr11 136073265 136073553 -12709919 - L2 LINE L2 -12 3301 3012 2181 189 29 10 chr11 136075099 136075517 -12707955 - MSTB LTR MaLR 0 426 1 425 284 43 0 chr11 136076586 136076702 -12706770 - L2 LINE L2 0 3313 3193 331 275 0 12 chr11 136077277 136077357 -12706115 + L2 LINE L2 3184 3262 -10 673 262 139 40 chr11 136077636 136077938 -12705534 + MLT1D LTR MaLR 174 505 0 2049 133 3 10 chr11 136078879 136079181 -12704291 - AluSx SINE Alu -12 300 1 200 156 0 0 chr11 136079386 136079418 -12704054 + L2 LINE L2 3189 3220 -93 307 295 23 87 chr11 136079477 136079650 -12703822 + L3 LINE CR1 1408 1569 -8 485 342 84 54 chr11 136079735 136080176 -12703296 + L2 LINE L2 2809 3262 -10 273 57 0 0 chr11 136080317 136080352 -12703120 + (GA)n Simple_repeat Simple_repeat 2 36 0 287 333 119 11 chr11 136081936 136082113 -12701359 - MIR SINE MIR -50 212 17 615 311 106 22 chr11 136082578 136082945 -12700527 - L3 LINE CR1 0 1577 1180 234 62 0 0 chr11 136083452 136083484 -12699988 + (A)n Simple_repeat Simple_repeat 1 32 0 22 35 0 0 chr11 136084513 136084542 -12698930 + AT_rich Low_complexity Low_complexity 1 29 0 285 249 152 37 chr11 136084948 136085165 -12698307 - L1ME4a LINE L1 -162 5959 5718 647 302 47 5 chr11 136086326 136086538 -12696934 + MIR SINE MIR 42 262 0 183 273 91 30 chr11 136088522 136088588 -12694884 - MIR SINE MIR -99 109 40 183 393 35 12 chr11 136089181 136089354 -12694118 - MER5A DNA MER1_type -6 183 7 467 326 73 32 chr11 136089520 136089738 -12693734 + MIR SINE MIR 4 230 -32 266 321 7 73 chr11 136089856 136089993 -12693479 + MIR3 SINE MIR 42 169 -39 248 272 120 0 chr11 136090488 136090580 -12692892 - L2 LINE L2 -23 3290 3188 181 133 0 0 chr11 136091288 136091318 -12692154 + L2 LINE L2 3282 3311 -2 468 324 22 32 chr11 136094422 136094607 -12688865 - MIR3 SINE MIR -9 199 17 300 258 52 58 chr11 136097463 136097618 -12685854 - L2 LINE L2 -55 3258 3105 276 393 15 25 chr11 136097765 136097961 -12685511 - L2 LINE L2 -572 2742 2549 197 331 98 63 chr11 136098324 136098690 -12684782 - L2 LINE L2 -809 2505 2127 243 304 123 58 chr11 136099292 136099535 -12683937 - L2 LINE L2 -71 3242 2984 391 276 71 24 chr11 136099564 136099691 -12683781 - L2 LINE L2 -823 2491 2359 285 51 0 0 chr11 136100335 136100374 -12683098 + (TG)n Simple_repeat Simple_repeat 2 40 0 868 251 17 111 chr11 136100944 136101454 -12682018 - MLT1F1 LTR MaLR -2 565 1 243 397 30 45 chr11 136101735 136101934 -12681538 - L2 LINE L2 -1 3271 3076 623 259 105 5 chr11 136102089 136102296 -12681176 + MIR SINE MIR 34 261 -1 2647 94 24 5 chr11 136103168 136103549 -12679923 - L1PB1 LINE L1 -1 6150 5763 2570 237 9 33 chr11 136103558 136104203 -12679269 + MER82 DNA MER2_type 24 653 0 406 316 62 21 chr11 136104387 136104675 -12678797 + L1MEd LINE L1 1232 1531 -4885 389 296 109 31 chr11 136104707 136104964 -12678508 + L1MEd LINE L1 1420 1696 -4730 256 371 43 9 chr11 136105423 136105539 -12677933 + MIR SINE MIR 23 142 -66 1923 138 0 3 chr11 136105587 136105896 -12677576 + AluSq SINE Alu 1 308 0 322 104 0 0 chr11 136106794 136106842 -12676630 + MER53 DNA DNA 130 177 -12 318 134 45 30 chr11 136106796 136106863 -12676609 - MER53 DNA DNA -121 68 1 * 648 284 68 72 chr11 136107401 136108189 -12675283 + L1MEd LINE L1 773 1561 -4568 376 307 100 33 chr11 136108800 136109070 -12674402 + L1M4 LINE L1 4493 4780 -1366 1062 267 15 33 chr11 136109253 136109643 -12673829 + L1MEd LINE L1 1644 2026 -4581 314 336 73 12 chr11 136109845 136110057 -12673415 - L1ME LINE L1 -675 5489 5291 403 152 13 0 chr11 136110057 136110136 -12673336 + MER116 DNA Mariner 1 80 0 314 336 73 12 chr11 136110136 136110569 -12672903 - L1ME LINE L1 -873 5291 4801 634 197 58 90 chr11 136110906 136111189 -12672283 - MER39 LTR ERV1 -166 541 67 3958 129 2 5 chr11 136111452 136112057 -12671415 + L1PA12 LINE L1 5563 6165 -3 359 215 49 148 chr11 136112108 136112352 -12671120 - MER41B LTR ERV1 -205 430 57 315 344 86 18 chr11 136112526 136112689 -12670783 - MIR3 SINE MIR -23 185 12 1780 166 24 48 chr11 136113010 136113384 -12670088 - MLT1A1 LTR MaLR 0 365 1 390 91 0 0 chr11 136113901 136113956 -12669516 + (CA)n Simple_repeat Simple_repeat 1 55 0 345 300 32 71 chr11 136114018 136114271 -12669201 - L1MC4a LINE L1 -1877 5931 5689 590 144 21 0 chr11 136115060 136115157 -12668315 - L1MC1 LINE L1 -18 6315 6217 639 273 16 49 chr11 136115292 136115596 -12667876 - HAL1 LINE L1 -903 1604 1311 745 263 27 21 chr11 136115606 136115941 -12667531 + L1MB8 LINE L1 3021 3357 -2789 1961 110 14 14 chr11 136115974 136116256 -12667216 - MER1B DNA MER1_type -1 338 57 6475 220 54 11 chr11 136116273 136118608 -12664864 + L1MB8 LINE L1 3385 5829 -355 2117 192 14 33 chr11 136118608 136119029 -12664443 + MER47B DNA MER2_type 1 413 -5 1330 218 45 6 chr11 136119035 136119365 -12664107 + L1MB8 LINE L1 5827 6169 -9 284 309 41 0 chr11 136119410 136119507 -12663965 - L2 LINE L2 -255 3058 2958 302 286 62 30 chr11 136120043 136120270 -12663202 + MLT1K LTR MaLR 359 573 -15 188 245 61 0 chr11 136121311 136121360 -12662112 + L2 LINE L2 3132 3183 -89 264 244 154 0 chr11 136121559 136121637 -12661835 - MIR SINE MIR -72 190 101 29 70 0 0 chr11 136122189 136122246 -12661226 + AT_rich Low_complexity Low_complexity 1 57 0 241 204 20 0 chr11 136122299 136122348 -12661124 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 631 145 8 32 chr11 136122490 136122614 -12660858 - L1MA4 LINE L1 -7 6293 6173 1687 151 27 27 chr11 136122614 136122946 -12660526 + L1MA4 LINE L1 5836 6167 -133 3600 158 132 9 chr11 136124529 136125265 -12658207 + LTR1B LTR ERV1 1 826 0 237 279 0 0 chr11 136127525 136127586 -12655886 - L1P LINE L1 -2481 3665 3605 319 236 55 106 chr11 136127688 136127887 -12655585 - L1ME1 LINE L1 -43 6123 5935 * 807 283 84 29 chr11 136127880 136128717 -12654755 - L1MEc LINE L1 -4471 1925 1043 5380 163 19 24 chr11 136128730 136130013 -12653459 - L1M1 LINE L1 -743 5403 4235 1612 317 27 24 chr11 136130031 136130707 -12652765 - L1MEc LINE L1 -5680 716 39 693 327 142 2 chr11 136130806 136131271 -12652201 - L1MDa LINE L1 -2748 3792 3263 347 306 104 39 chr11 136131461 136131952 -12651520 - L1MDa LINE L1 -4705 1835 1313 * 5014 176 40 19 chr11 136131932 136133011 -12650461 - L1PB4 LINE L1 -1 6155 5100 1326 142 50 0 chr11 136133011 136133230 -12650242 - MER30 DNA MER1_type 0 230 1 5014 176 40 19 chr11 136133230 136133856 -12649616 - L1PB4 LINE L1 -1056 5100 4394 192 77 0 0 chr11 136133856 136133882 -12649590 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 5014 176 40 19 chr11 136133882 136134019 -12649453 - L1PB4 LINE L1 -1762 4394 4261 333 0 0 0 chr11 136134019 136134056 -12649416 + (TG)n Simple_repeat Simple_repeat 1 37 0 231 296 45 15 chr11 136134066 136134198 -12649274 - L2 LINE L2 -359 2955 2820 419 198 12 173 chr11 136134210 136134385 -12649087 - LTR41 LTR ERVL -21 752 625 2185 137 36 17 chr11 136134385 136134742 -12648730 - THE1B LTR MaLR 0 364 1 419 198 12 173 chr11 136134742 136134809 -12648663 - LTR41 LTR ERVL -148 625 549 533 278 25 19 chr11 136134975 136135137 -12648335 + MIR SINE MIR 90 252 -10 244 245 147 56 chr11 136136041 136136184 -12647288 - MIR SINE MIR -3 259 104 249 311 0 0 chr11 136136397 136136458 -12647014 - MIR SINE MIR -155 107 47 672 300 23 35 chr11 136137689 136137949 -12645523 - MIR SINE MIR -4 258 2 180 152 0 0 chr11 136138162 136138195 -12645277 + (TA)n Simple_repeat Simple_repeat 1 33 0 861 243 32 33 chr11 136140122 136140351 -12643121 + MER20 DNA MER1_type 1 215 -4 639 241 53 37 chr11 136140506 136140693 -12642779 - MIR SINE MIR 0 262 73 4584 198 30 5 chr11 136140695 136141620 -12641852 + MER45B DNA AcHobo 1 1040 0 360 250 98 98 chr11 136143127 136143371 -12640101 + MIR SINE MIR 6 249 -13 1606 142 40 46 chr11 136143739 136144042 -12639430 - AluJb SINE Alu -11 301 1 2420 72 0 0 chr11 136144113 136144406 -12639066 - AluY SINE Alu -15 296 4 861 96 59 0 chr11 136144713 136144849 -12638623 - L1MA5A LINE L1 -3 6294 6151 1667 58 0 5 chr11 136145764 136145969 -12637503 - AluY SINE Alu -2 309 106 216 135 0 0 chr11 136147124 136147161 -12636311 + (GA)n Simple_repeat Simple_repeat 2 38 0 231 258 22 11 chr11 136147188 136147277 -12636195 - HAL1 LINE L1 -1420 1087 998 1432 104 5 5 chr11 136147891 136148112 -12635360 - pTR5 LTR ERV1 -2046 392 172 341 194 31 20 chr11 136148115 136148213 -12635259 - LTR30 LTR ERV1 -80 642 544 4576 114 78 70 chr11 136148213 136149337 -12634135 - pTR5 LTR ERV1 -413 2025 741 273 368 14 0 chr11 136149347 136149486 -12633986 - MIR SINE MIR -53 155 11 242 338 12 12 chr11 136149512 136149592 -12633880 - L2 LINE L2 -2 3311 3232 193 261 22 0 chr11 136150764 136150810 -12632662 + MIR SINE MIR 32 78 -130 473 343 9 33 chr11 136150868 136151081 -12632391 - MIR SINE MIR -7 255 48 1311 205 35 51 chr11 136151298 136151678 -12631794 + MLT1A2 LTR MaLR 1 467 0 260 199 116 16 chr11 136151727 136151808 -12631664 - MIR3 SINE MIR -52 156 71 2357 109 0 0 chr11 136152108 136152419 -12631053 - AluSx SINE Alu -1 311 1 243 0 0 0 chr11 136153715 136153742 -12629730 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 267 289 31 21 chr11 136154043 136154140 -12629332 + MIR SINE MIR 127 224 -38 312 306 150 47 chr11 136154187 136154546 -12628926 - L3 LINE CR1 -51 1526 1131 1902 115 63 3 chr11 136154559 136154846 -12628626 - AluSq SINE Alu -5 308 5 558 297 84 76 chr11 136155192 136156586 -12626886 - L1MC3 LINE L1 -252 5895 687 234 0 0 0 chr11 136157236 136157262 -12626210 + (T)n Simple_repeat Simple_repeat 1 26 0 180 0 0 0 chr11 136157289 136157309 -12626163 + (G)n Simple_repeat Simple_repeat 1 20 0 368 306 53 19 chr11 136157995 136158204 -12625268 - LTR33 LTR ERVL -4 517 302 253 221 118 0 chr11 136158371 136158439 -12625033 - LTR33 LTR ERVL -428 93 18 448 330 20 30 chr11 136159062 136159259 -12624213 - MIR SINE MIR -12 250 56 226 314 20 39 chr11 136159670 136159772 -12623700 - MER91 DNA MER1_type -57 139 40 810 155 19 7 chr11 136159772 136159927 -12623545 - MER34C LTR ERV1 -277 308 152 24 53 0 0 chr11 136161014 136161052 -12622420 + AT_rich Low_complexity Low_complexity 1 38 0 1842 136 0 0 chr11 136161056 136161307 -12622165 + AluSx SINE Alu 6 256 -56 22 35 0 0 chr11 136162841 136162870 -12620602 + AT_rich Low_complexity Low_complexity 1 29 0 453 196 9 9 chr11 136164114 136164221 -12619251 + L1 LINE L1 2254 2360 -3786 829 247 46 48 chr11 136164223 136164595 -12618877 - L1M4 LINE L1 -1042 5104 4734 572 284 47 14 chr11 136164581 136164859 -12618613 - L1MDa LINE L1 -2392 3688 3402 * 972 251 5 5 chr11 136164912 136165135 -12618337 + LTR28 LTR ERV1 1 223 -797 497 205 34 42 chr11 136165253 136165479 -12617993 + MER61D LTR ERV1 335 473 -28 566 190 54 135 chr11 136165663 136165934 -12617538 - L1MDa LINE L1 -2756 3324 3069 266 57 0 0 chr11 136165934 136165969 -12617503 + HSMAR1 DNA Mariner 1253 1287 0 566 190 54 135 chr11 136165969 136166222 -12617250 - L1MDa LINE L1 -3011 3069 2797 1670 196 25 30 chr11 136166227 136166594 -12616878 + MLT1A1 LTR MaLR 1 365 0 1786 46 0 5 chr11 136166802 136167018 -12616454 - AluY SINE Alu -78 233 19 1054 265 79 73 chr11 136167018 136167991 -12615481 - L1MDa LINE L1 -4549 1531 553 644 238 52 6 chr11 136168023 136168195 -12615277 - MER58A DNA MER1_type -19 205 26 362 306 181 55 chr11 136168239 136168510 -12614962 - L1MDa LINE L1 -5521 549 245 233 233 14 0 chr11 136168676 136168749 -12614723 - L1MDa LINE L1 -5967 103 30 420 328 75 15 chr11 136168954 136169088 -12614384 - MIR3 SINE MIR -26 182 41 1718 181 7 26 chr11 136169252 136169556 -12613916 + AluJb SINE Alu 2 299 -13 395 261 78 39 chr11 136170410 136170563 -12612909 - MIR SINE MIR -30 232 74 496 257 92 0 chr11 136170598 136170707 -12612765 + MER5B DNA MER1_type 1 119 -59 279 122 0 0 chr11 136170710 136170759 -12612713 + (TATG)n Simple_repeat Simple_repeat 2 50 0 279 211 0 0 chr11 136170766 136170818 -12612654 + MER5B DNA MER1_type 126 177 -1 613 78 0 39 chr11 136171113 136171215 -12612257 - L1PA11 LINE L1 -1 6173 6076 29 47 0 0 chr11 136171340 136171383 -12612089 + AT_rich Low_complexity Low_complexity 1 43 0 214 280 80 70 chr11 136171383 136171483 -12611989 + L2 LINE L2 3176 3276 -37 252 315 65 9 chr11 136171494 136171602 -12611870 + L2 LINE L2 3151 3264 -8 203 321 104 9 chr11 136171859 136171965 -12611507 + MER5B DNA MER1_type 63 178 0 682 175 9 0 chr11 136172448 136172562 -12610910 + FLAM_C SINE Alu 3 117 -16 237 160 60 0 chr11 136173301 136173351 -12610121 + CT-rich Low_complexity Low_complexity 2 54 0 243 266 16 0 chr11 136173991 136174055 -12609417 + CT-rich Low_complexity Low_complexity 2 66 0 350 262 8 25 chr11 136174214 136174336 -12609136 + (TATATG)n Simple_repeat Simple_repeat 6 125 0 425 205 36 0 chr11 136175380 136175463 -12608009 + MER45C DNA AcHobo 2 87 -866 335 263 114 59 chr11 136175696 136175932 -12607540 + MER45C DNA AcHobo 327 575 -378 22 0 0 0 chr11 136176219 136176241 -12607231 + AT_rich Low_complexity Low_complexity 1 22 0 239 389 69 0 chr11 136177057 136177188 -12606284 + L2 LINE L2 3133 3272 0 198 171 0 0 chr11 136177190 136177231 -12606241 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 471 286 6 56 chr11 136177404 136177565 -12605907 - L2 LINE L2 -5 3308 3156 832 319 111 33 chr11 136177587 136178126 -12605346 - L2 LINE L2 -2479 835 255 437 278 154 19 chr11 136178396 136178558 -12604914 + MIR3 SINE MIR 4 187 -21 245 305 213 6 chr11 136178684 136178858 -12604614 + MIR SINE MIR 50 259 -3 252 220 18 28 chr11 136179667 136179776 -12603696 + (CATATA)n Simple_repeat Simple_repeat 2 109 0 221 296 122 20 chr11 136180200 136180298 -12603174 - L2 LINE L2 -1 3312 3205 508 315 20 50 chr11 136180364 136180564 -12602908 + MIR3 SINE MIR 14 207 -1 340 267 48 9 chr11 136181462 136181567 -12601905 - MER5A DNA MER1_type -77 112 4 247 251 171 51 chr11 136181695 136181870 -12601602 - L3b LINE CR1 -208 1375 1180 773 219 24 12 chr11 136182889 136183053 -12600419 - FAM SINE Alu -9 166 1 311 301 36 105 chr11 136183188 136183407 -12600065 + MIR SINE MIR 38 241 -21 280 214 43 43 chr11 136183632 136183702 -12599770 - L2 LINE L2 -17 3255 3186 216 86 0 0 chr11 136184137 136184172 -12599300 + (T)n Simple_repeat Simple_repeat 1 35 0 1144 192 114 52 chr11 136184173 136184516 -12598956 + MLT1A1 LTR MaLR 2 365 0 22 99 0 0 chr11 136184656 136184727 -12598745 + AT_rich Low_complexity Low_complexity 1 71 0 2070 128 3 3 chr11 136184727 136185015 -12598457 - AluSq SINE Alu -22 291 4 190 206 187 56 chr11 136187122 136187229 -12596243 + MIR SINE MIR 126 246 -16 214 378 45 0 chr11 136188098 136188209 -12595263 + MIR SINE MIR 14 129 -133 2289 60 4 0 chr11 136188277 136188599 -12594873 + AluY SINE Alu 1 323 0 22 35 0 0 chr11 136188701 136188730 -12594742 + AT_rich Low_complexity Low_complexity 1 29 0 518 293 58 16 chr11 136189346 136189534 -12593938 + MIR SINE MIR 32 227 -35 25 31 0 0 chr11 136189551 136189583 -12593889 + AT_rich Low_complexity Low_complexity 1 32 0 504 250 115 14 chr11 136190247 136190395 -12593077 - MIR SINE MIR -28 234 72 197 369 28 86 chr11 136190940 136191230 -12592242 + L2 LINE L2 3000 3272 0 2681 32 3 0 chr11 136191314 136191623 -12591849 + AluY SINE Alu 1 310 -1 2531 59 0 0 chr11 136192778 136193081 -12590391 + AluY SINE Alu 1 303 -8 3605 126 0 26 chr11 136193192 136193732 -12589740 + MER1A DNA MER1_type 2 527 0 1395 188 53 16 chr11 136196394 136196697 -12586775 + L1MCa LINE L1 21 334 -6092 592 169 0 73 chr11 136196728 136196864 -12586608 - FLAM_A SINE Alu 0 142 17 7571 224 81 23 chr11 136196873 136201713 -12581759 + L1MCa LINE L1 512 5683 -743 4550 150 7 12 chr11 136201725 136202484 -12580988 + Tigger1 DNA MER2_type 1661 2415 -3 654 258 60 31 chr11 136203034 136203352 -12580120 + L1MC4a LINE L1 6246 6572 -1236 333 261 180 0 chr11 136203500 136203611 -12579861 + MER94 DNA DNA 3 133 -1 244 252 252 0 chr11 136203811 136203938 -12579534 + MIR SINE MIR 104 262 0 186 43 0 0 chr11 136204996 136205019 -12578453 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 21 82 0 0 chr11 136205043 136205092 -12578380 + AT_rich Low_complexity Low_complexity 1 49 0 2037 252 81 96 chr11 136205118 136206698 -12576774 - HAL1 LINE L1 -56 2451 899 2365 57 27 0 chr11 136206698 136206999 -12576473 - AluY SINE Alu -2 309 1 2037 252 81 96 chr11 136206999 136207154 -12576318 - HAL1 LINE L1 -1608 899 743 349 367 49 49 chr11 136207304 136207530 -12575942 - HAL1 LINE L1 -1879 628 403 1746 109 0 0 chr11 136207637 136207875 -12575597 + AluSg/x SINE Alu 65 302 -8 1087 144 62 0 chr11 136207949 136208144 -12575328 - L1PA16 LINE L1 -4 6162 5956 272 105 0 123 chr11 136208146 136208174 -12575298 - MER53 DNA DNA -137 52 33 1177 95 6 0 chr11 136208174 136208342 -12575130 - L1PB1 LINE L1 0 6151 5983 272 105 0 123 chr11 136208342 136208370 -12575102 - MER53 DNA DNA -156 33 3 381 274 82 55 chr11 136208390 136208645 -12574827 - HAL1 LINE L1 -2151 356 95 1029 266 114 83 chr11 136209055 136210131 -12573341 + HAL1 LINE L1 286 1395 -1112 405 229 0 0 chr11 136210133 136210238 -12573234 + (CA)n Simple_repeat Simple_repeat 1 105 0 375 237 139 36 chr11 136210246 136210440 -12573032 + HAL1 LINE L1 1391 1604 -903 182 295 13 13 chr11 136210498 136210576 -12572896 - MER5A DNA MER1_type -103 86 9 306 295 53 66 chr11 136210666 136210968 -12572504 + HAL1 LINE L1 1815 2112 -395 455 282 53 29 chr11 136211092 136211301 -12572171 + HAL1 LINE L1 2290 2503 -4 183 80 0 0 chr11 136212011 136212036 -12571436 + (T)n Simple_repeat Simple_repeat 1 25 0 210 156 0 0 chr11 136212362 136212407 -12571065 + (TTCA)n Simple_repeat Simple_repeat 2 46 0 320 339 16 39 chr11 136212414 136212541 -12570931 - L2 LINE L2 0 3272 3149 298 344 99 0 chr11 136212553 136212704 -12570768 - MER5A DNA MER1_type -23 166 1 772 217 16 48 chr11 136213165 136213354 -12570118 - MER5A DNA MER1_type 0 189 7 231 216 0 20 chr11 136213964 136214015 -12569457 - L1ME LINE L1 -247 5874 5825 329 230 62 106 chr11 136214502 136214615 -12568857 - MER5B DNA MER1_type -1 177 81 549 261 8 8 chr11 136214622 136214752 -12568720 + MER5A DNA MER1_type 19 148 -41 241 200 31 46 chr11 136214746 136214811 -12568661 - MER5A DNA MER1_type -30 159 96 * 1016 175 136 91 chr11 136214941 136215227 -12568245 + AluJo SINE Alu 1 299 -3 427 335 66 10 chr11 136215249 136215446 -12568026 - MIR SINE MIR -39 223 16 306 98 0 0 chr11 136218572 136218623 -12564849 + (A)n Simple_repeat Simple_repeat 1 51 0 3765 223 47 21 chr11 136220468 136221730 -12561742 - L1MB7 LINE L1 -10 6174 4840 4003 146 103 13 chr11 136221730 136222488 -12560984 - LTR1B LTR ERV1 0 826 1 3765 223 47 21 chr11 136222488 136223115 -12560357 - L1MB7 LINE L1 -1344 4840 4231 450 230 32 0 chr11 136223185 136223311 -12560161 - Charlie1a DNA MER1_type -1045 410 281 1070 150 0 0 chr11 136223329 136223489 -12559983 - AluSc SINE Alu -6 303 144 679 263 81 5 chr11 136223542 136223728 -12559744 - Charlie1a DNA MER1_type -1250 205 6 297 378 24 0 chr11 136226945 136227072 -12556400 + L2 LINE L2 3182 3311 -2 22 0 0 0 chr11 136227208 136227230 -12556242 + AT_rich Low_complexity Low_complexity 1 22 0 1869 118 0 83 chr11 136228318 136228631 -12554841 + AluSx SINE Alu 14 300 -12 2106 145 54 106 chr11 136228987 136229298 -12554174 + LTR32 LTR ERVL 15 294 -177 4254 64 0 12 chr11 136229298 136229860 -12553612 - L1PA6 LINE L1 0 6154 5600 2106 145 54 106 chr11 136229860 136230030 -12553442 + LTR32 LTR ERVL 294 471 0 282 73 0 0 chr11 136230239 136230286 -12553186 + (TG)n Simple_repeat Simple_repeat 1 88 0 282 73 0 0 chr11 136230286 136230327 -12553145 + (TG)n Simple_repeat Simple_repeat 2 42 0 23 0 0 0 chr11 136231925 136231948 -12551524 + AT_rich Low_complexity Low_complexity 1 23 0 740 304 108 29 chr11 136232586 136232994 -12550478 + L3 LINE CR1 713 1152 -425 273 206 20 108 chr11 136233739 136233841 -12549631 - MIR SINE MIR -75 187 95 333 281 123 35 chr11 136234519 136234690 -12548782 - MIR3 SINE MIR -10 198 13 26 30 0 0 chr11 136235117 136235150 -12548322 + AT_rich Low_complexity Low_complexity 1 33 0 25086 32 0 3 chr11 136235189 136239019 -12544453 - L1PA3 LINE L1 0 6155 2335 562 66 0 0 chr11 136239088 136239164 -12544308 + L1P LINE L1 3654 3729 -2417 672 299 56 9 chr11 136239663 136239894 -12543578 + MIR SINE MIR 19 260 -2 351 208 54 12 chr11 136240848 136241016 -12542456 + (TA)n Simple_repeat Simple_repeat 1 175 0 1571 195 72 32 chr11 136241019 136241393 -12542079 + MSTD LTR MaLR 7 395 -1 231 114 0 0 chr11 136241393 136241428 -12542044 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 423 0 0 0 chr11 136241433 136241480 -12541992 + (TG)n Simple_repeat Simple_repeat 2 48 0 292 315 0 0 chr11 136241481 136241573 -12541899 + (TA)n Simple_repeat Simple_repeat 1 92 0 283 300 75 55 chr11 136241616 136241816 -12541656 - MLT1J2 LTR MaLR -121 329 126 222 182 68 0 chr11 136243096 136243140 -12540332 - L2 LINE L2 -12 3260 3214 21 0 0 0 chr11 136243460 136243481 -12539991 + AT_rich Low_complexity Low_complexity 1 21 0 229 321 80 0 chr11 136243701 136243813 -12539659 - MIR3 SINE MIR -7 201 81 26 0 0 0 chr11 136244142 136244168 -12539304 + AT_rich Low_complexity Low_complexity 1 26 0 310 184 66 0 chr11 136244169 136244245 -12539227 - L1MA9 LINE L1 -22 6290 6210 183 80 0 0 chr11 136244385 136244410 -12539062 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 3682 186 97 21 chr11 136244614 136245410 -12538062 - MER21B LTR ERV1 -7 856 1 690 331 134 21 chr11 136245443 136246105 -12537367 + L2 LINE L2 883 1619 -1695 348 282 110 62 chr11 136246212 136246244 -12537228 - L2 LINE L2 -576 2738 2709 1944 108 22 60 chr11 136246244 136246558 -12536914 - AluSg SINE Alu -8 302 1 348 282 110 62 chr11 136246558 136246734 -12536738 - L2 LINE L2 -605 2709 2520 1267 242 0 8 chr11 136246759 136247019 -12536453 - AluJo SINE Alu -54 258 1 360 318 111 52 chr11 136247027 136247370 -12536102 - L2 LINE L2 -777 2537 2175 528 301 61 53 chr11 136247830 136248291 -12535181 - L1ME3A LINE L1 -287 5883 5409 * 1176 331 123 18 chr11 136248284 136249387 -12534085 + L2 LINE L2 1826 3057 -256 683 301 70 35 chr11 136250037 136250436 -12533036 - LTR33 LTR ERVL -108 413 1 24 0 0 0 chr11 136250762 136250786 -12532686 + AT_rich Low_complexity Low_complexity 1 24 0 228 67 0 0 chr11 136250824 136250854 -12532618 + (TCTA)n Simple_repeat Simple_repeat 3 32 0 1164 194 16 39 chr11 136250855 136251164 -12532308 - Tigger1 DNA MER2_type -1 2417 2116 * 1235 146 25 46 chr11 136251157 136251396 -12532076 - THE1B LTR MaLR -130 234 1 9882 97 63 3 chr11 136251396 136252887 -12530585 - THE1B-int LTR MaLR 0 1580 1 2070 125 63 26 chr11 136252887 136253238 -12530234 - THE1B LTR MaLR 0 364 1 7351 151 35 23 chr11 136253240 136254615 -12528857 - Tigger1 DNA MER2_type -747 1671 278 4590 91 41 0 chr11 136254615 136255256 -12528216 - PABL_B LTR ERV1 0 667 1 7351 151 35 23 chr11 136255256 136255288 -12528184 - Tigger1 DNA MER2_type -2140 278 248 359 244 112 53 chr11 136255359 136255732 -12527740 - L1 LINE L1 -1637 4509 4080 185 233 48 136 chr11 136255792 136255895 -12527577 - MIR3 SINE MIR -5 203 110 473 161 45 0 chr11 136255914 136256069 -12527403 + (CAGAGA)n Simple_repeat Simple_repeat 2 163 0 333 0 0 0 chr11 136257192 136257229 -12526243 + (T)n Simple_repeat Simple_repeat 1 37 0 2025 152 0 29 chr11 136257524 136257839 -12525633 + AluSx SINE Alu 1 306 -6 820 333 92 4 chr11 136258655 136259120 -12524352 + LTR33 LTR ERVL 3 508 -13 1528 139 4 4 chr11 136259640 136259870 -12523602 + AluSg/x SINE Alu 81 310 -2 252 284 21 50 chr11 136259883 136260024 -12523448 - MER103 DNA DNA -11 155 19 1885 123 0 0 chr11 136260536 136260805 -12522667 + AluSc SINE Alu 1 269 -40 252 0 0 0 chr11 136260814 136260842 -12522630 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 955 124 43 0 chr11 136261368 136261529 -12521943 - L1MB1 LINE L1 -1 6167 6000 242 233 0 17 chr11 136262877 136262937 -12520535 + (CATATA)n Simple_repeat Simple_repeat 6 64 0 1731 140 53 37 chr11 136263508 136264060 -12519412 + MER51A LTR ERV1 1 634 0 4321 102 13 166 chr11 136264061 136265645 -12517827 - pTR5 LTR ERV1 0 2606 1524 287 340 55 35 chr11 136266168 136266368 -12517104 + MIR SINE MIR 2 205 -57 323 278 89 0 chr11 136267375 136267465 -12516007 - MIR SINE MIR -61 201 104 216 0 0 0 chr11 136268451 136268475 -12514997 + (T)n Simple_repeat Simple_repeat 1 24 0 838 201 83 52 chr11 136269977 136270206 -12513266 + MSTB LTR MaLR 1 236 -192 926 166 50 0 chr11 136270269 136270450 -12513022 + MSTB LTR MaLR 237 426 0 782 289 96 19 chr11 136270506 136270870 -12512602 - MLT1I LTR MaLR -3 406 15 24 85 0 0 chr11 136271754 136271813 -12511659 + AT_rich Low_complexity Low_complexity 1 59 0 1854 140 0 47 chr11 136272520 136272841 -12510631 + AluJb SINE Alu 1 306 -6 22 0 0 0 chr11 136272997 136273019 -12510453 + AT_rich Low_complexity Low_complexity 1 22 0 327 271 31 0 chr11 136273061 136273157 -12510315 + MIR SINE MIR 53 151 -111 1337 189 119 57 chr11 136273374 136273745 -12509727 - MSTD LTR MaLR 0 396 3 264 318 65 29 chr11 136274053 136274223 -12509249 - MIR SINE MIR -44 218 43 552 210 55 39 chr11 136274553 136274734 -12508738 - L1MC2 LINE L1 -9 6335 6152 592 186 48 162 chr11 136274757 136275091 -12508381 - L1ME3A LINE L1 0 6170 5875 2586 183 59 5 chr11 136275102 136275664 -12507808 - L1MC1 LINE L1 0 6613 6022 309 244 73 49 chr11 136275931 136276054 -12507418 - L1ME4a LINE L1 -5 6116 5991 13576 190 26 10 chr11 136276055 136280337 -12503135 - L1PB1 LINE L1 0 6867 2471 2220 123 0 3 chr11 136280337 136280645 -12502827 + AluSc SINE Alu 1 307 -2 13576 190 26 10 chr11 136280645 136281744 -12501728 - L1PB1 LINE L1 -4396 2471 1392 2478 205 26 4 chr11 136281814 136282928 -12500544 - L1MC1 LINE L1 -579 6034 4897 10437 130 8 3 chr11 136282936 136285357 -12498115 + L1PA8A LINE L1 3700 6129 -2 751 166 46 116 chr11 136285383 136285624 -12497848 - L1MC1 LINE L1 -5499 927 704 1662 171 43 169 chr11 136285625 136286419 -12497053 - LTR8A LTR ERV1 0 727 34 1568 208 76 0 chr11 136286425 136286767 -12496705 - L1MC1 LINE L1 -5708 718 351 1840 228 2 10 chr11 136286776 136287179 -12496293 - MER54A LTR ERVL -16 885 486 1378 230 35 6 chr11 136287331 136287674 -12495798 - L1MC1 LINE L1 -6071 355 3 * 5540 199 94 34 chr11 136287660 136288510 -12494962 + L1MC3 LINE L1 6022 6820 -965 2284 136 19 16 chr11 136288510 136288884 -12494588 + THE1C LTR MaLR 1 375 0 5540 199 94 34 chr11 136288884 136289689 -12493783 + L1MC3 LINE L1 6820 7775 -10 278 329 0 14 chr11 136290313 136290386 -12493086 - L2 LINE L2 -52 3220 3149 671 85 0 0 chr11 136290752 136290846 -12492626 - AluY SINE Alu -11 300 207 198 167 0 0 chr11 136293832 136293868 -12489604 + (TA)n Simple_repeat Simple_repeat 1 36 0 1851 49 0 5 chr11 136293868 136294091 -12489381 - AluY SINE Alu 0 311 90 342 347 52 26 chr11 136295212 136295405 -12488067 + MIR SINE MIR 18 215 -47 461 251 201 0 chr11 136296580 136296759 -12486713 + MIR SINE MIR 21 235 -27 2237 110 0 0 chr11 136296863 136297163 -12486309 - AluY SINE Alu -11 300 1 195 42 0 0 chr11 136297508 136297532 -12485940 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 287 345 5 0 chr11 136297678 136297878 -12485594 - L1MC/D LINE L1 -1940 5868 5668 253 293 0 0 chr11 136298297 136298355 -12485117 + L2 LINE L2 2702 2759 -555 183 244 37 24 chr11 136298679 136298761 -12484711 + MIR SINE MIR 124 206 -56 1620 135 4 0 chr11 136298857 136299094 -12484378 + AluY SINE Alu 68 305 -6 360 240 0 62 chr11 136299118 136299214 -12484258 + MER58B DNA MER1_type 2 91 -250 809 211 39 104 chr11 136299881 136300161 -12483311 + MER58B DNA MER1_type 80 341 0 237 302 23 0 chr11 136300181 136300267 -12483205 + (TATATG)n Simple_repeat Simple_repeat 6 93 0 1212 61 0 0 chr11 136300443 136300591 -12482881 + AluYa8 SINE Alu 160 307 -3 2382 93 0 3 chr11 136300732 136301042 -12482430 - AluSx SINE Alu -3 309 1 240 354 68 27 chr11 136301132 136301279 -12482193 + MIR3 SINE MIR 35 187 -21 384 278 80 37 chr11 136301321 136301483 -12481989 - L3 LINE CR1 -608 969 801 2254 274 61 6 chr11 136301502 136302600 -12480872 - L1ME3A LINE L1 -8 6162 4998 334 321 9 0 chr11 136302668 136302780 -12480692 - L1MC4 LINE L1 -1316 6726 6614 250 256 70 12 chr11 136302824 136302910 -12480562 - L3 LINE CR1 -809 768 678 33 0 0 0 chr11 136302930 136302963 -12480509 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr11 136304059 136304083 -12479389 + AT_rich Low_complexity Low_complexity 1 24 0 2305 111 3 0 chr11 136304473 136304770 -12478702 - AluSx SINE Alu -14 298 1 3296 135 50 1 chr11 136305174 136305898 -12477574 - L1PA8A LINE L1 -644 5487 4729 4138 88 33 35 chr11 136305898 136306146 -12477326 + L1PA10 LINE L1 5535 5782 -386 2149 102 30 10 chr11 136306146 136306449 -12477023 + AluSc SINE Alu 1 309 0 4138 88 33 35 chr11 136306449 136306832 -12476640 + L1PA10 LINE L1 5782 6166 -2 233 289 10 77 chr11 136307573 136307677 -12475795 - L2 LINE L2 0 3313 3217 345 301 16 16 chr11 136308135 136308258 -12475214 - MIR SINE MIR -58 204 82 2150 94 0 33 chr11 136308262 136308587 -12474885 + AluSx SINE Alu 1 312 0 1626 182 25 0 chr11 136308848 136309134 -12474338 - AluJb SINE Alu -19 293 1 459 0 0 0 chr11 136310294 136310345 -12473127 + (TG)n Simple_repeat Simple_repeat 2 52 0 269 258 11 75 chr11 136311033 136311126 -12472346 + L2 LINE L2 3227 3313 0 1692 208 149 29 chr11 136311222 136311704 -12471768 - MLT1F LTR MaLR -2 540 1 3640 250 53 35 chr11 136311734 136313203 -12470269 + L1MC/D LINE L1 3365 4860 -1286 2095 206 43 40 chr11 136313192 136313745 -12469727 - L1MD1 LINE L1 -8 6234 5680 * 7291 152 78 55 chr11 136313905 136315562 -12467910 + pTR5 LTR ERV1 743 2438 0 498 345 56 53 chr11 136316222 136316544 -12466928 + L3 LINE CR1 1244 1566 -11 670 251 148 59 chr11 136316871 136317297 -12466175 + MLT2C2 LTR ERVL 1 464 0 184 333 16 0 chr11 136317556 136317619 -12465853 - MIR3 SINE MIR -19 189 126 202 353 118 43 chr11 136318512 136318699 -12464773 - MIR SINE MIR -47 215 15 728 264 114 45 chr11 136320979 136321426 -12462046 - MLT1H LTR MaLR 0 549 72 255 61 0 0 chr11 136321527 136321560 -12461912 + (TG)n Simple_repeat Simple_repeat 2 34 0 991 233 19 56 chr11 136322342 136322664 -12460808 - L1MD2 LINE L1 -22 6337 6028 2070 160 26 40 chr11 136322688 136323113 -12460359 - MSTB1 LTR MaLR -13 419 1 2609 121 35 21 chr11 136323514 136323936 -12459536 + MSTA LTR MaLR 1 428 0 2044 106 4 0 chr11 136325501 136325775 -12457697 - AluSx SINE Alu -15 297 23 321 276 159 56 chr11 136326198 136326412 -12457060 + L1MC/D LINE L1 5314 5549 -2259 186 87 65 0 chr11 136326491 136326537 -12456935 + (TA)n Simple_repeat Simple_repeat 1 49 0 33 56 0 0 chr11 136326697 136326751 -12456721 + AT_rich Low_complexity Low_complexity 1 54 0 292 219 19 38 chr11 136327480 136327585 -12455887 + LTR41 LTR ERVL 3 105 -668 291 252 17 42 chr11 136327920 136328039 -12455433 + LTR41 LTR ERVL 649 764 -9 195 231 138 62 chr11 136330036 136330101 -12453371 + L2 LINE L2 3200 3269 -3 540 291 143 22 chr11 136330213 136330443 -12453029 + MIR SINE MIR 3 260 -2 244 0 0 53 chr11 136330590 136330628 -12452844 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2047 92 0 58 chr11 136330635 136330930 -12452542 - AluSx SINE Alu -33 279 2 297 141 35 0 chr11 136333867 136333952 -12449520 + (TA)n Simple_repeat Simple_repeat 2 89 0 302 167 0 15 chr11 136334997 136335063 -12448409 + GA-rich Low_complexity Low_complexity 4 68 0 215 31 31 0 chr11 136335261 136335293 -12448179 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 215 264 0 56 chr11 136335770 136335842 -12447630 - MIR3 SINE MIR 0 208 141 254 292 142 8 chr11 136336056 136336176 -12447296 - MIR SINE MIR -70 192 57 268 323 75 0 chr11 136336325 136336418 -12447054 - L2 LINE L2 -16 3256 3157 984 318 68 6 chr11 136336497 136337007 -12446465 - L2 LINE L2 -124 3189 2640 309 270 196 7 chr11 136337339 136337487 -12445985 + MER5B DNA MER1_type 1 176 -2 21 36 0 0 chr11 136337735 136337763 -12445709 + AT_rich Low_complexity Low_complexity 1 28 0 303 311 65 57 chr11 136338202 136338588 -12444884 - MLT1J2 LTR MaLR -15 435 47 360 176 0 0 chr11 136339440 136339508 -12443964 + (TG)n Simple_repeat Simple_repeat 1 68 0 26 50 0 0 chr11 136339863 136339903 -12443569 + AT_rich Low_complexity Low_complexity 1 40 0 312 245 31 0 chr11 136340202 136340300 -12443172 + (TA)n Simple_repeat Simple_repeat 2 102 0 322 266 0 43 chr11 136340301 136340395 -12443077 - L1MC4 LINE L1 -1340 6702 6613 324 289 0 11 chr11 136340403 136340493 -12442979 - L1MC4 LINE L1 -1339 6703 6615 266 264 0 22 chr11 136340494 136340585 -12442887 + (TA)n Simple_repeat Simple_repeat 1 89 0 233 292 28 28 chr11 136341488 136341560 -12441912 + L2 LINE L2 3230 3301 -12 1213 183 109 93 chr11 136342101 136342561 -12440911 - MLT1C LTR MaLR 0 467 1 5739 87 16 3 chr11 136342628 136343692 -12439780 - L1PA6 LINE L1 0 6154 5025 466 285 92 82 chr11 136343969 136344285 -12439187 - L2 LINE L2 0 3313 2991 2463 104 19 22 chr11 136344285 136344650 -12438822 - THE1B LTR MaLR 0 364 1 466 285 92 82 chr11 136344650 136344747 -12438725 - L2 LINE L2 -322 2991 2896 540 292 88 40 chr11 136346367 136346593 -12436879 - MIR SINE MIR -6 256 20 1976 145 7 0 chr11 136347721 136348010 -12435462 + AluSx SINE Alu 1 291 -21 259 369 27 43 chr11 136348034 136348221 -12435251 + L2 LINE L2 3089 3272 0 191 296 14 56 chr11 136349070 136349141 -12434331 - L2 LINE L2 -2 3270 3203 435 275 174 13 chr11 136349368 136349517 -12433955 - MER5B DNA MER1_type -5 173 1 391 358 102 38 chr11 136350747 136350911 -12432561 - L2 LINE L2 -1 3271 3119 1811 180 0 0 chr11 136350911 136351195 -12432277 + AluSx SINE Alu 1 284 -28 195 42 0 0 chr11 136351195 136351219 -12432253 + (TA)n Simple_repeat Simple_repeat 2 25 0 391 358 102 38 chr11 136351219 136351726 -12431746 - L2 LINE L2 -152 3120 2563 233 337 51 34 chr11 136351745 136351920 -12431552 - L2 LINE L2 -704 2610 2433 205 298 48 19 chr11 136352574 136352678 -12430794 + L2 LINE L2 2433 2539 -775 252 399 13 7 chr11 136352919 136353072 -12430400 - MER5A DNA MER1_type 0 189 36 202 302 65 65 chr11 136352926 136353095 -12430377 + MER5A DNA MER1_type 21 189 0 * 402 159 148 23 chr11 136353416 136353504 -12429968 - MSTC LTR MaLR -329 99 1 978 169 17 0 chr11 136353727 136353905 -12429567 - MER53 DNA DNA -3 186 6 758 181 121 0 chr11 136354466 136354632 -12428840 + MER53 DNA DNA 1 186 -3 287 346 99 37 chr11 136355213 136355375 -12428097 + L3 LINE CR1 1375 1546 -31 238 333 48 40 chr11 136355393 136355490 -12427982 + MIR SINE MIR 23 123 -139 2310 70 3 20 chr11 136355490 136355788 -12427684 - AluY SINE Alu -18 293 1 238 333 48 40 chr11 136355788 136355816 -12427656 + MIR SINE MIR 123 149 -113 2866 13 0 0 chr11 136356332 136356643 -12426829 - AluY SINE Alu 0 311 1 2280 85 3 0 chr11 136358235 136358528 -12424944 - AluY SINE Alu -17 294 1 2538 67 0 10 chr11 136358959 136359272 -12424200 - AluY SINE Alu -1 310 1 189 315 97 37 chr11 136359277 136359493 -12423979 + L2 LINE L2 2672 2900 -414 183 318 127 0 chr11 136359715 136359825 -12423647 + L2 LINE L2 3190 3313 0 196 393 69 7 chr11 136359851 136359996 -12423476 + MIR3 SINE MIR 25 178 -30 953 320 62 44 chr11 136360547 136361157 -12422315 + L2 LINE L2 2284 2904 -410 676 175 9 9 chr11 136361237 136361351 -12422121 - FRAM SINE Alu -55 121 8 539 302 42 109 chr11 136361355 136361806 -12421666 + L2 LINE L2 2891 3311 -2 874 259 110 68 chr11 136362265 136362763 -12420709 - LTR33 LTR ERVL -2 519 1 225 200 0 0 chr11 136362986 136363031 -12420441 + T-rich Low_complexity Low_complexity 1 45 0 294 301 15 29 chr11 136363841 136363977 -12419495 + GA-rich Low_complexity Low_complexity 5 138 0 2023 134 3 3 chr11 136364539 136364831 -12418641 - AluSx SINE Alu -20 292 1 303 28 0 0 chr11 136364924 136364960 -12418512 + (TG)n Simple_repeat Simple_repeat 2 37 0 2310 116 0 0 chr11 136365715 136366017 -12417455 + AluSx SINE Alu 1 302 -10 430 269 111 50 chr11 136366171 136366468 -12417004 + L1ME4a LINE L1 5563 5877 -244 186 103 0 0 chr11 136367018 136367047 -12416425 + (CA)n Simple_repeat Simple_repeat 2 30 0 2257 92 10 7 chr11 136369755 136370049 -12413423 - AluSq SINE Alu -18 295 1 667 274 94 11 chr11 136370178 136370501 -12412971 - MLT1J2 LTR MaLR -7 443 65 272 362 26 33 chr11 136371301 136371453 -12412019 - MIR SINE MIR -57 205 55 182 326 20 0 chr11 136373322 136373371 -12410101 - MIR SINE MIR -129 79 30 192 326 105 11 chr11 136374242 136374337 -12409135 - L2 LINE L2 -183 3089 2986 402 316 29 0 chr11 136375197 136375333 -12408139 + L3b LINE CR1 1252 1391 -192 334 277 71 19 chr11 136376246 136376401 -12407071 + MIR SINE MIR 24 186 -76 227 269 0 0 chr11 136376618 136376670 -12406802 - MIR SINE MIR -64 144 93 290 111 28 28 chr11 136376683 136376755 -12406717 + T-rich Low_complexity Low_complexity 2 73 0 769 145 17 12 chr11 136376762 136376934 -12406538 + CT-rich Low_complexity Low_complexity 4 176 0 1115 174 38 0 chr11 136376962 136377175 -12406297 - L1MA9 LINE L1 -40 6272 6052 1473 201 11 0 chr11 136377293 136377557 -12405915 - AluJb SINE Alu -18 294 28 787 178 40 63 chr11 136378028 136378101 -12405371 + MER5B DNA MER1_type 3 76 -102 645 278 44 0 chr11 136378101 136378281 -12405191 - MER5A DNA MER1_type 0 189 2 787 178 40 63 chr11 136378281 136378381 -12405091 + MER5B DNA MER1_type 76 172 -6 385 328 49 0 chr11 136379019 136379141 -12404331 - MIR SINE MIR -58 204 77 526 292 63 54 chr11 136379579 136380024 -12403448 - L1ME4a LINE L1 -265 5856 5408 396 40 0 0 chr11 136380215 136380265 -12403207 + (TG)n Simple_repeat Simple_repeat 2 51 0 190 304 61 78 chr11 136381420 136381535 -12401937 - MIR SINE MIR -129 133 21 290 286 155 19 chr11 136381538 136381699 -12401773 + MIR SINE MIR 1 183 -79 1769 119 11 15 chr11 136381715 136381976 -12401496 + AluSx SINE Alu 1 260 -52 45491 36 1 3 chr11 136383510 136389667 -12393805 - L1PA4 LINE L1 0 6155 8 3268 227 34 88 chr11 136389672 136390814 -12392658 - L1MCb LINE L1 -4856 1189 110 342 278 23 45 chr11 136391081 136391135 -12392337 + MER103 DNA DNA 1 55 -111 2574 44 10 0 chr11 136391135 136391431 -12392041 - AluY SINE Alu -12 299 1 342 278 23 45 chr11 136391431 136391509 -12391963 + MER103 DNA DNA 55 130 -36 270 328 100 11 chr11 136392528 136392708 -12390764 + MIR SINE MIR 44 239 -23 183 302 0 0 chr11 136392867 136392910 -12390562 + MIR SINE MIR 78 120 -142 2489 68 3 0 chr11 136392910 136393220 -12390252 + AluY SINE Alu 1 311 0 238 287 112 19 chr11 136393283 136393434 -12390038 + MIR SINE MIR 31 192 -65 297 337 21 63 chr11 136394588 136394778 -12388694 - MIR SINE MIR 0 262 81 328 191 15 0 chr11 136395040 136395108 -12388364 + MER116 DNA Mariner 2 70 -10 226 194 0 56 chr11 136395268 136395340 -12388132 + A-rich Low_complexity Low_complexity 5 72 0 198 307 44 70 chr11 136395665 136395779 -12387693 - L2 LINE L2 -8 3264 3154 266 50 25 0 chr11 136396240 136396280 -12387192 + (GA)n Simple_repeat Simple_repeat 2 42 0 884 203 28 60 chr11 136396640 136396857 -12386615 + MER20 DNA MER1_type 7 216 -3 198 118 0 0 chr11 136398120 136398154 -12385318 + (TC)n Simple_repeat Simple_repeat 1 34 0 313 271 103 9 chr11 136398419 136398526 -12384946 + MIR3 SINE MIR 89 205 -3 430 295 66 11 chr11 136399215 136399398 -12384074 - L2 LINE L2 -1 3312 3120 231 376 0 0 chr11 136399563 136399656 -12383816 + MIR3 SINE MIR 103 195 -13 252 377 69 17 chr11 136399699 136399754 -12383718 + L2 LINE L2 1992 2043 -1271 2149 143 0 0 chr11 136399754 136400062 -12383410 - AluSx SINE Alu -4 308 1 252 377 69 17 chr11 136400062 136400295 -12383177 + L2 LINE L2 2043 2295 -1019 2604 264 103 27 chr11 136400715 136403326 -12380146 - L1ME3A LINE L1 0 6239 3351 2040 237 46 28 chr11 136403346 136403887 -12379585 - MLT2B3 LTR ERVL -2 552 2 387 254 114 39 chr11 136403924 136404464 -12379008 - L1M4 LINE L1 -2440 3706 3119 305 331 60 16 chr11 136404469 136404653 -12378819 - L1M4 LINE L1 -3745 2401 2210 250 263 31 31 chr11 136404671 136404831 -12378641 - L1ME3A LINE L1 -4104 2292 2133 2096 184 19 25 chr11 136404952 136405429 -12378043 - L1MB8 LINE L1 0 6989 6516 1949 160 49 30 chr11 136405429 136405955 -12377517 + MLT2A2 LTR ERVL 18 554 0 8045 230 61 24 chr11 136405955 136409013 -12374459 - L1MB8 LINE L1 -461 6534 3356 723 174 66 15 chr11 136409110 136409306 -12374166 + L1MB3 LINE L1 4364 4569 -1577 * 3974 217 36 20 chr11 136409303 136409591 -12373881 + L1MB3 LINE L1 5046 5328 -855 1909 123 40 17 chr11 136409591 136409893 -12373579 + AluSx SINE Alu 4 312 0 3974 217 36 20 chr11 136409893 136410726 -12372746 + L1MB3 LINE L1 5328 6183 0 1327 244 125 51 chr11 136410742 136411020 -12372452 - L1MB8 LINE L1 -4551 2408 2152 3206 77 4 18 chr11 136411020 136411473 -12371999 - L1PA13 LINE L1 -1 6162 5716 1327 244 125 51 chr11 136411473 136412312 -12371160 - L1MB8 LINE L1 -4807 2152 1206 1943 265 132 39 chr11 136412824 136413585 -12369887 - L1MB8 LINE L1 -5923 936 98 2266 105 3 16 chr11 136413585 136413899 -12369573 - AluSq SINE Alu -3 310 1 1943 265 132 39 chr11 136413899 136413923 -12369549 - L1MB8 LINE L1 -6761 98 78 1995 87 0 17 chr11 136413999 136414298 -12369174 + L1P LINE L1 2260 2553 -3593 353 184 101 37 chr11 136414281 136414390 -12369082 - L1MB8 LINE L1 -6733 126 11 * 233 71 0 0 chr11 136414646 136414702 -12368770 + AluSc SINE Alu 255 310 0 409 273 117 24 chr11 136414899 136415233 -12368239 + L1MEc LINE L1 1272 1636 -4760 2379 81 0 3 chr11 136415255 136415551 -12367921 + AluSq SINE Alu 7 301 -12 198 103 0 0 chr11 136415674 136415703 -12367769 + (TC)n Simple_repeat Simple_repeat 2 30 0 267 279 107 26 chr11 136415783 136416016 -12367456 - L1MEd LINE L1 -4875 1244 993 32 57 0 0 chr11 136416057 136416110 -12367362 + AT_rich Low_complexity Low_complexity 1 53 0 31687 76 10 22 chr11 136416159 136416535 -12366937 - L1PA6 LINE L1 -5 6149 5770 2400 67 0 10 chr11 136416535 136416833 -12366639 - AluY SINE Alu -16 295 1 31687 76 10 22 chr11 136416833 136421863 -12361609 - L1PA6 LINE L1 -384 5770 816 28 48 0 0 chr11 136421876 136421918 -12361554 + AT_rich Low_complexity Low_complexity 1 42 0 253 150 120 10 chr11 136421998 136422098 -12361374 - L1MEd LINE L1 -5251 868 758 23 86 0 0 chr11 136422678 136422736 -12360736 + AT_rich Low_complexity Low_complexity 1 58 0 336 278 33 73 chr11 136423069 136423220 -12360252 + MIR SINE MIR 114 258 -4 2368 162 60 20 chr11 136423760 136424210 -12359262 + MER31A LTR ERV1 1 468 -17 823 192 31 55 chr11 136424304 136424920 -12358552 - MER4C LTR ERV1 -2 695 3 2480 308 99 34 chr11 136425821 136427399 -12356073 + L2 LINE L2 1520 3211 -102 21 0 0 0 chr11 136427657 136427678 -12355794 + AT_rich Low_complexity Low_complexity 1 21 0 205 198 86 62 chr11 136428641 136428722 -12354750 + L2 LINE L2 3190 3272 0 25 0 0 0 chr11 136428895 136428920 -12354552 + AT_rich Low_complexity Low_complexity 1 25 0 200 371 42 68 chr11 136428950 136429257 -12354215 - L2 LINE L2 -65 3207 2909 1653 153 77 49 chr11 136430548 136430913 -12352559 + THE1C LTR MaLR 1 375 0 35 41 0 0 chr11 136431218 136431267 -12352205 + AT_rich Low_complexity Low_complexity 1 49 0 699 186 47 23 chr11 136431584 136431756 -12351716 - HERVL LTR ERVL -9 5755 5580 24 53 0 0 chr11 136432303 136432341 -12351131 + AT_rich Low_complexity Low_complexity 1 38 0 244 83 28 0 chr11 136432517 136432553 -12350919 - MLT2B1 LTR ERVL -7 508 472 212 250 0 0 chr11 136432556 136432620 -12350852 + (TA)n Simple_repeat Simple_repeat 1 64 0 270 0 0 0 chr11 136432637 136432667 -12350805 + (CA)n Simple_repeat Simple_repeat 2 31 0 2311 211 40 4 chr11 136432673 136433129 -12350343 - MLT2B1 LTR ERVL -48 472 1 14197 183 25 9 chr11 136433131 136435756 -12347716 - ERVL-B1 LTR ERVL -9 5755 3089 1852 146 32 3 chr11 136435757 136436065 -12347407 + THE1B LTR MaLR 1 317 -47 1468 195 33 0 chr11 136436065 136436544 -12346928 - L1M1 LINE L1 -728 5572 5082 605 309 16 12 chr11 136436544 136436787 -12346685 - HERVL LTR ERVL -5395 259 16 1060 267 101 64 chr11 136437980 136439384 -12344088 + L1MEc LINE L1 1962 3391 -2824 550 213 14 71 chr11 136439395 136439536 -12343936 + MLT1A1 LTR MaLR 227 385 -11 6226 254 71 16 chr11 136439543 136441188 -12342284 + MLT1A2-int LTR MaLR 1 1735 0 667 251 60 121 chr11 136441188 136441586 -12341886 + MLT1A2 LTR MaLR 1 374 0 1073 273 68 39 chr11 136441587 136441844 -12341628 + L1M4 LINE L1 4340 4588 -1558 1777 146 31 14 chr11 136441844 136442131 -12341341 - AluSq SINE Alu -21 292 1 1073 273 68 39 chr11 136442131 136442533 -12340939 + L1M4 LINE L1 4588 5018 -1128 585 321 24 40 chr11 136442592 136442963 -12340509 + L1PA12 LINE L1 7 371 -7210 14970 207 22 60 chr11 136444182 136447727 -12335745 + L1PA12 LINE L1 2403 5726 -1858 2009 141 7 0 chr11 136447727 136448017 -12335455 - AluSg SINE Alu -18 292 1 14970 207 22 60 chr11 136448017 136449082 -12334390 + L1PA12 LINE L1 5726 6830 -754 6405 218 24 87 chr11 136449077 136449566 -12333906 - L1M1 LINE L1 -1920 4226 3708 * 924 200 11 0 chr11 136449566 136449746 -12333726 - AluSg/x SINE Alu 0 312 131 6405 218 24 87 chr11 136449746 136451544 -12331928 - L1M1 LINE L1 -2438 3708 1912 429 53 0 0 chr11 136451545 136451602 -12331870 + L1P LINE L1 1 57 -6089 * 10533 29 0 0 chr11 136451599 136453630 -12329842 + L1PA4 LINE L1 4123 6152 -3 557 143 71 0 chr11 136453656 136453768 -12329704 - L1PA15-16 LINE L1 -4225 2624 2505 314 309 59 15 chr11 136453769 136453905 -12329567 - L1MEd LINE L1 -3561 2568 2427 249 297 45 7 chr11 136454055 136454210 -12329262 - L1MEd LINE L1 -3846 2283 2123 243 320 64 6 chr11 136454585 136454741 -12328731 - HAL1 LINE L1 -940 1567 1403 204 40 0 0 chr11 136454800 136454825 -12328647 + (TTTTTG)n Simple_repeat Simple_repeat 3 27 0 301 275 92 26 chr11 136454916 136455305 -12328167 - L1MEd LINE L1 -5010 1109 695 235 115 96 58 chr11 136455998 136456050 -12327422 - MER110A LTR ERV1 -314 154 101 253 351 61 9 chr11 136456097 136456211 -12327261 + L2 LINE L2 2565 2684 -630 195 214 89 0 chr11 136457483 136457539 -12325933 + MIR SINE MIR 176 236 -26 262 328 227 10 chr11 136459161 136459359 -12324113 + MIR SINE MIR 1 241 -21 2123 193 33 10 chr11 136459628 136460114 -12323358 + L1MB3 LINE L1 5687 6183 0 1797 253 43 21 chr11 136460189 136460283 -12323189 - L1ME1 LINE L1 -5 6161 6071 2128 109 91 18 chr11 136460283 136460622 -12322850 + THE1B LTR MaLR 1 364 0 11349 105 10 0 chr11 136460622 136462187 -12321285 + THE1B-int LTR MaLR 1 1580 0 2144 119 76 17 chr11 136462187 136462531 -12320941 + THE1B LTR MaLR 1 364 0 1797 253 43 21 chr11 136462531 136463054 -12320418 - L1ME1 LINE L1 -94 6072 5528 10368 172 28 10 chr11 136463284 136466184 -12317288 - L1PA13 LINE L1 -5 6158 3224 676 290 19 19 chr11 136466341 136466555 -12316917 + MIR SINE MIR 19 232 -30 905 157 13 25 chr11 136466602 136466761 -12316711 - FRAM SINE Alu -23 153 1 1053 148 0 0 chr11 136467085 136467299 -12316173 + (TA)n Simple_repeat Simple_repeat 1 214 0 429 289 194 15 chr11 136468651 136468852 -12314620 - MIR SINE MIR -12 250 14 237 178 0 0 chr11 136469174 136469219 -12314253 + CT-rich Low_complexity Low_complexity 3 47 0 841 224 4 69 chr11 136469270 136469502 -12313970 + MER20 DNA MER1_type 2 218 -1 425 336 74 41 chr11 136470021 136470387 -12313085 - L2 LINE L2 -688 2626 2249 420 283 80 71 chr11 136472729 136472955 -12310517 + MIR SINE MIR 29 256 -6 2899 176 48 43 chr11 136473579 136474306 -12309166 + L1MB8 LINE L1 5448 6178 0 341 309 48 16 chr11 136475312 136475438 -12308034 - MIR SINE MIR -113 149 20 190 171 0 0 chr11 136475699 136475734 -12307738 + L2 LINE L2 3274 3308 -5 311 286 250 5 chr11 136475787 136475979 -12307493 - MIR SINE MIR -12 250 12 284 292 25 42 chr11 136477370 136477490 -12305982 - L3b LINE CR1 -198 1385 1268 23 33 0 0 chr11 136477741 136477771 -12305701 + AT_rich Low_complexity Low_complexity 1 30 0 345 238 41 8 chr11 136478009 136478131 -12305341 + L1M2 LINE L1 5650 5775 -537 360 0 0 0 chr11 136478442 136478482 -12304990 + (CA)n Simple_repeat Simple_repeat 2 41 0 636 252 121 46 chr11 136478872 136479245 -12304227 + MER93a LTR ERV1 2 402 0 693 261 88 33 chr11 136479303 136479518 -12303954 + MIR SINE MIR 3 229 -33 208 161 0 54 chr11 136479537 136479593 -12303879 + T-rich Low_complexity Low_complexity 1 53 0 258 81 0 0 chr11 136480968 136481005 -12302467 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 2185 94 4 0 chr11 136481010 136481285 -12302187 - AluSp SINE Alu -37 276 1 244 293 40 20 chr11 136481605 136481704 -12301768 - MIR SINE MIR -6 256 156 23 0 0 0 chr11 136481975 136481998 -12301474 + AT_rich Low_complexity Low_complexity 1 23 0 494 296 48 16 chr11 136482844 136483030 -12300442 - MIR SINE MIR 0 262 71 180 240 40 0 chr11 136484051 136484101 -12299371 - MIR SINE MIR -120 142 91 331 268 191 12 chr11 136484336 136484504 -12298968 + LTR16B LTR ERVL 1 198 -266 273 269 0 0 chr11 136484549 136484616 -12298856 + LTR16B LTR ERVL 394 460 -4 388 240 124 39 chr11 136485518 136485647 -12297825 - MIR SINE MIR -110 152 13 282 375 44 6 chr11 136485663 136485983 -12297489 + HAL1 LINE L1 1474 1805 -702 409 235 96 6 chr11 136486211 136486377 -12297095 + HAL1 LINE L1 2115 2295 -212 207 69 0 0 chr11 136486436 136486465 -12297007 + (TG)n Simple_repeat Simple_repeat 2 30 0 296 176 15 0 chr11 136486546 136486614 -12296858 + (CATATA)n Simple_repeat Simple_repeat 2 70 0 303 298 35 45 chr11 136486618 136486816 -12296656 + HAL1 LINE L1 2312 2507 0 24 32 0 0 chr11 136487985 136488016 -12295456 + AT_rich Low_complexity Low_complexity 1 31 0 432 158 0 0 chr11 136488039 136488121 -12295351 + L1MA7 LINE L1 6208 6289 -2 1862 128 21 7 chr11 136491657 136491938 -12291534 + AluSx SINE Alu 1 285 -27 903 45 0 0 chr11 136491938 136492050 -12291422 + (GGAA)n Simple_repeat Simple_repeat 3 114 0 400 246 42 84 chr11 136492882 136493024 -12290448 + L2 LINE L2 3132 3267 -5 674 297 112 18 chr11 136493111 136493782 -12289690 + L2 LINE L2 2596 3313 0 3323 96 11 0 chr11 136494047 136494495 -12288977 - MLT2A2 LTR ERVL 0 453 1 1913 271 68 70 chr11 136494623 136495931 -12287541 + L1MC4 LINE L1 6678 7986 -56 1864 117 12 0 chr11 136495931 136496215 -12287257 - AluSx SINE Alu 0 309 23 1913 271 68 70 chr11 136496215 136496268 -12287204 + L1MC4 LINE L1 7986 8038 -4 2300 114 0 0 chr11 136496278 136496585 -12286887 - AluSx SINE Alu -5 307 1 1003 118 0 0 chr11 136496585 136496720 -12286752 - AluSq/x SINE Alu -177 135 1 269 277 69 46 chr11 136497326 136497456 -12286016 - MIR SINE MIR -42 220 88 2259 117 0 0 chr11 136497604 136497913 -12285559 - AluSg SINE Alu -1 309 1 290 360 50 7 chr11 136498265 136498446 -12285026 - MIR SINE MIR -56 206 20 307 91 0 0 chr11 136498494 136498538 -12284934 + MLT2A1 LTR ERVL 236 279 -165 626 147 0 38 chr11 136498539 136498723 -12284749 + (TTCC)n Simple_repeat Simple_repeat 4 180 0 226 250 44 0 chr11 136498850 136498918 -12284554 + MLT1L LTR MaLR 203 273 -342 204 204 163 0 chr11 136501232 136501281 -12282191 + MIR SINE MIR 100 156 -106 * 216 265 15 15 chr11 136501278 136501346 -12282126 - MIR SINE MIR 0 262 195 2261 162 18 48 chr11 136501480 136501918 -12281554 + MSTB LTR MaLR 2 426 0 507 222 43 0 chr11 136502209 136502326 -12281146 - MIR SINE MIR -26 236 115 3414 197 25 25 chr11 136502685 136503401 -12280071 + MER44D DNA MER2_type 10 597 -8 232 280 60 40 chr11 136503437 136503537 -12279935 + MIR SINE MIR 156 257 -5 1030 281 65 16 chr11 136503547 136503914 -12279558 - LTR16A LTR ERVL -10 440 56 725 298 61 8 chr11 136505603 136505848 -12277624 - MIR SINE MIR -2 260 3 311 172 0 31 chr11 136506451 136506515 -12276957 - MLT2D LTR ERVL 0 414 353 388 125 81 16 chr11 136506517 136506894 -12276578 + (TCTA)n Simple_repeat Simple_repeat 1 401 0 1914 186 11 8 chr11 136506897 136507267 -12276205 - MLT2D LTR ERVL -43 371 1 194 227 30 30 chr11 136508708 136508774 -12274698 + MIR SINE MIR 191 256 -6 209 320 64 0 chr11 136508890 136508968 -12274504 - MIR SINE MIR -109 153 71 201 39 0 0 chr11 136509592 136509618 -12273854 + (TG)n Simple_repeat Simple_repeat 1 26 0 2186 75 0 7 chr11 136509619 136509898 -12273574 - AluY SINE Alu -34 277 1 252 346 80 77 chr11 136511043 136511644 -12271828 + L2 LINE L2 1061 1663 -1651 573 302 54 10 chr11 136511688 136511893 -12271579 + L2 LINE L2 1890 2103 -1211 885 271 40 8 chr11 136511944 136512195 -12271277 - MIR SINE MIR -3 259 1 608 296 78 33 chr11 136512265 136512535 -12270937 + L2 LINE L2 2214 2495 -819 26 30 0 0 chr11 136512576 136512609 -12270863 + AT_rich Low_complexity Low_complexity 1 33 0 360 355 96 0 chr11 136512656 136512853 -12270619 + L2 LINE L2 2863 3078 -194 252 59 0 0 chr11 136513219 136513253 -12270219 + (TG)n Simple_repeat Simple_repeat 2 35 0 254 29 29 0 chr11 136515245 136515280 -12268192 + (TC)n Simple_repeat Simple_repeat 1 36 0 320 350 57 41 chr11 136515799 136515993 -12267479 + MIR SINE MIR 16 212 -50 5845 107 42 0 chr11 136517054 136518333 -12265139 - L1PA11 LINE L1 -1 6488 5200 1017 41 0 0 chr11 136518333 136518454 -12265018 + AluY SINE Alu 189 309 -2 19844 200 19 19 chr11 136518462 136523657 -12259815 - L1PA11 LINE L1 -1254 5207 8 271 350 25 13 chr11 136524655 136524814 -12258658 - MIR SINE MIR -34 228 69 331 217 0 0 chr11 136524815 136524875 -12258597 + L2 LINE L2 3212 3271 -1 2186 207 37 64 chr11 136525320 136526680 -12256792 + L1MC3 LINE L1 723 2137 -4427 5525 219 31 35 chr11 136526703 136530530 -12252942 + L1MC3 LINE L1 2667 5418 -1146 2453 44 0 7 chr11 136530530 136530828 -12252644 + AluY SINE Alu 2 297 -14 5525 219 31 35 chr11 136530828 136531231 -12252241 + L1MC3 LINE L1 5418 5821 -743 987 132 0 16 chr11 136531470 136531652 -12251820 + (TA)n Simple_repeat Simple_repeat 1 179 0 667 299 23 0 chr11 136531742 136531919 -12251553 - MIR SINE MIR -65 197 17 578 272 80 44 chr11 136532291 136532541 -12250931 - MIR SINE MIR 0 262 4 2252 105 3 0 chr11 136533782 136534076 -12249396 - AluSc SINE Alu -14 295 1 384 256 44 7 chr11 136534650 136534787 -12248685 + L1ME3A LINE L1 6020 6161 -9 225 0 0 0 chr11 136535425 136535450 -12248022 + (CA)n Simple_repeat Simple_repeat 2 26 0 393 267 198 11 chr11 136536075 136536262 -12247210 + MIR SINE MIR 41 262 0 435 209 29 9 chr11 136536762 136536867 -12246605 + MLT1B LTR MaLR 21 127 -263 2158 109 16 3 chr11 136536869 136537173 -12246299 + AluSx SINE Alu 1 308 -4 204 40 0 0 chr11 136537314 136537339 -12246133 + (A)n Simple_repeat Simple_repeat 1 25 0 402 115 0 0 chr11 136537473 136537534 -12245938 + (TTCC)n Simple_repeat Simple_repeat 4 64 0 2058 137 0 0 chr11 136537555 136537862 -12245610 - AluY SINE Alu -4 307 1 2013 133 3 13 chr11 136539494 136539796 -12243676 + AluSx SINE Alu 1 299 -13 211 333 0 15 chr11 136539799 136539865 -12243607 - MIR SINE MIR -149 113 49 800 243 0 23 chr11 136540220 136540397 -12243075 - MER5A DNA MER1_type 0 189 17 207 0 0 0 chr11 136540550 136540573 -12242899 + (T)n Simple_repeat Simple_repeat 1 23 0 3576 68 9 57 chr11 136542373 136543180 -12240292 + L1PA8 LINE L1 5229 6155 -17 297 340 93 19 chr11 136544415 136544577 -12238895 + MIR SINE MIR 31 204 -58 206 288 13 174 chr11 136546255 136546491 -12236981 - MIR3 SINE MIR -3 205 8 196 293 216 9 chr11 136546829 136546945 -12236527 + MIR SINE MIR 118 257 -5 2227 114 0 0 chr11 136547123 136547412 -12236060 + AluSp SINE Alu 1 289 -24 593 260 0 6 chr11 136547418 136547599 -12235873 + (TA)n Simple_repeat Simple_repeat 1 180 0 744 187 191 57 chr11 136547988 136548271 -12235201 - MER58B DNA MER1_type -20 321 1 408 67 0 0 chr11 136548877 136548937 -12234535 + (GA)n Simple_repeat Simple_repeat 1 60 0 213 216 20 0 chr11 136549056 136549107 -12234365 + MIR3 SINE MIR 150 201 -7 295 324 35 28 chr11 136550179 136550324 -12233148 + MIR SINE MIR 11 156 -106 420 326 52 26 chr11 136550344 136550577 -12232895 - MLT1L LTR MaLR -18 597 359 368 217 71 12 chr11 136552533 136552632 -12230840 - MLT1I LTR MaLR -8 428 318 198 315 0 27 chr11 136553019 136553092 -12230380 + MIR SINE MIR 160 230 -32 503 313 30 78 chr11 136554939 136555387 -12228085 + HAL1b LINE L1 291 660 -924 2672 225 47 19 chr11 136555407 136555861 -12227611 + L1MC4 LINE L1 7176 7659 -383 2187 111 51 17 chr11 136555861 136556211 -12227261 + THE1B LTR MaLR 1 362 -2 2672 225 47 19 chr11 136556211 136556479 -12226993 + L1MC4 LINE L1 7659 7918 -124 254 250 13 26 chr11 136556479 136556555 -12226917 + (TATATG)n Simple_repeat Simple_repeat 6 80 0 331 234 73 32 chr11 136556561 136556685 -12226787 + L1MC4 LINE L1 7914 8042 0 2171 119 3 0 chr11 136556695 136557006 -12226466 + AluSx SINE Alu 1 312 0 212 295 0 0 chr11 136557187 136557248 -12226224 + (CA)n Simple_repeat Simple_repeat 2 62 0 257 337 0 69 chr11 136557601 136557752 -12225720 + MIR SINE MIR 16 154 -81 1757 209 88 34 chr11 136558195 136558673 -12224799 - MLT1D LTR MaLR -1 504 1 201 313 78 16 chr11 136559240 136559304 -12224168 - L3b LINE CR1 -25 1558 1491 1648 171 26 7 chr11 136559884 136560188 -12223284 - AluSx SINE Alu -2 310 1 520 223 40 121 chr11 136560261 136560534 -12222938 + MER112 DNA MER1_type 5 255 -1 279 97 39 65 chr11 136560556 136560711 -12222761 + (TATAG)n Simple_repeat Simple_repeat 2 152 0 258 287 206 37 chr11 136560727 136560863 -12222609 + MER5A DNA MER1_type 28 186 -3 485 257 109 13 chr11 136560908 136561285 -12222187 - Charlie2 DNA MER1_type -37 2825 2413 25 51 0 0 chr11 136561311 136561350 -12222122 + AT_rich Low_complexity Low_complexity 1 39 0 485 257 28 91 chr11 136561488 136561741 -12221731 - Charlie2 DNA MER1_type -2545 237 1 805 284 19 51 chr11 136563167 136563424 -12220048 - MLT1K LTR MaLR -7 581 333 368 312 64 12 chr11 136563729 136563920 -12219552 + MIR SINE MIR 60 259 -3 379 338 0 30 chr11 136564047 136564180 -12219292 + MIR3 SINE MIR 43 171 -37 213 39 0 0 chr11 136564180 136564206 -12219266 + (TC)n Simple_repeat Simple_repeat 2 27 0 574 302 49 8 chr11 136564259 136564517 -12218955 - MLT1L LTR MaLR -5 610 240 319 267 11 11 chr11 136564628 136564718 -12218754 + MER94 DNA DNA 35 124 -10 * 406 278 146 28 chr11 136564717 136564929 -12218543 - MLT1L LTR MaLR -373 242 6 2348 218 29 22 chr11 136565141 136565686 -12217786 + MLT2B3 LTR ERVL 6 554 0 309 302 42 0 chr11 136566556 136566652 -12216820 + MIR SINE MIR 118 217 -45 21 0 0 0 chr11 136568326 136568347 -12215125 + AT_rich Low_complexity Low_complexity 1 21 0 2437 138 43 10 chr11 136570716 136571130 -12212342 + MSTA LTR MaLR 1 428 0 1808 256 128 83 chr11 136571328 136572330 -12211142 + L1MDa LINE L1 15 1130 -5410 1758 250 23 69 chr11 136572333 136572883 -12210589 - MLT2B3 LTR ERVL 0 554 1 4087 219 60 79 chr11 136572887 136575055 -12208417 + L1MDa LINE L1 1132 3239 -3301 2026 134 3 0 chr11 136575055 136575353 -12208119 + AluSx SINE Alu 1 299 -13 4087 219 60 79 chr11 136575353 136575653 -12207819 + L1MDa LINE L1 3239 3543 -2997 364 201 67 13 chr11 136575692 136575841 -12207631 - L1MCa LINE L1 -2829 3597 3441 5050 233 65 41 chr11 136575979 136576140 -12207332 - L1M4 LINE L1 -822 5324 5168 7546 28 0 2 chr11 136576140 136577348 -12206124 - L1PA3 LINE L1 -1 6154 4942 5050 233 65 41 chr11 136577348 136578615 -12204857 - L1M4 LINE L1 -978 5168 3837 2033 120 7 0 chr11 136578615 136578898 -12204574 - AluSc SINE Alu -24 285 1 5050 233 65 41 chr11 136578898 136579374 -12204098 - L1M4 LINE L1 -2309 3837 3374 4398 218 146 88 chr11 136579388 136581628 -12201844 - L1MCa LINE L1 -4052 2374 4 1009 274 115 52 chr11 136581658 136582115 -12201357 - L1M2 LINE L1 -2216 3999 3572 1651 189 0 3 chr11 136582115 136582400 -12201072 - AluJb SINE Alu -28 284 1 1009 274 115 52 chr11 136582400 136582699 -12200773 - L1M2 LINE L1 -2643 3572 3293 1045 258 122 11 chr11 136582699 136583068 -12200404 + MLT2D LTR ERVL 1 410 -4 1009 274 115 52 chr11 136583068 136583338 -12200134 - L1M2 LINE L1 -2922 3293 2907 431 254 70 11 chr11 136583378 136583563 -12199909 - L1M2 LINE L1 -3669 2546 2351 422 291 81 34 chr11 136583684 136584426 -12199046 - L1M2 LINE L1 -4123 2273 1475 1462 221 28 39 chr11 136584544 136584902 -12198570 + MLT1A1 LTR MaLR 1 354 -11 288 161 18 18 chr11 136585089 136585145 -12198327 + MLT1E2 LTR MaLR 26 81 -545 264 237 32 21 chr11 136585331 136585424 -12198048 - L1MEd LINE L1 -5101 1018 925 249 250 0 0 chr11 136586064 136586120 -12197352 + MLT1E2 LTR MaLR 26 81 -545 352 318 79 92 chr11 136586206 136587058 -12196414 + L1M4 LINE L1 26 866 -5676 201 158 0 0 chr11 136587085 136587123 -12196349 + A-rich Low_complexity Low_complexity 1 38 0 231 359 10 10 chr11 136587424 136587527 -12195945 + L1M4 LINE L1 515 617 -5925 377 280 87 87 chr11 136587537 136587812 -12195660 + L1M4 LINE L1 592 866 -5676 184 75 25 25 chr11 136587839 136587879 -12195593 + (TAAAAA)n Simple_repeat Simple_repeat 1 40 0 237 348 204 38 chr11 136587999 136589527 -12193945 - L2 LINE L2 -366 2948 1167 2489 113 56 52 chr11 136589589 136590015 -12193457 + MSTC LTR MaLR 1 428 0 271 240 20 100 chr11 136590044 136590144 -12193328 + L2 LINE L2 3185 3276 -37 659 322 97 24 chr11 136590401 136590774 -12192698 - MLT1L LTR MaLR -10 605 206 1903 151 0 0 chr11 136591554 136591859 -12191613 + AluSc SINE Alu 5 309 0 2290 138 0 14 chr11 136592240 136592603 -12190869 - MER47A DNA MER2_type -3 363 6 1685 184 9 30 chr11 136593360 136593696 -12189776 - MLT1C LTR MaLR 0 467 139 225 0 0 0 chr11 136593711 136593736 -12189736 + (T)n Simple_repeat Simple_repeat 1 25 0 189 74 0 0 chr11 136593892 136593919 -12189553 + (A)n Simple_repeat Simple_repeat 1 27 0 863 203 0 23 chr11 136594063 136594240 -12189232 + MER5A DNA MER1_type 17 189 0 1109 196 105 92 chr11 136594444 136594902 -12188570 - LTR37B LTR ERV1 -4 464 1 1891 204 79 17 chr11 136594939 136595405 -12188067 - LTR42 LTR ERVL 0 495 1 2168 125 0 6 chr11 136595748 136596060 -12187412 - AluSg SINE Alu 0 310 1 737 186 87 17 chr11 136596405 136596577 -12186895 + Charlie4 DNA MER1_type 21 204 -1757 1004 191 29 0 chr11 136596602 136596806 -12186666 + Charlie4 DNA MER1_type 1752 1961 0 342 0 0 0 chr11 136597001 136597039 -12186433 + (CA)n Simple_repeat Simple_repeat 2 39 0 242 339 0 0 chr11 136597568 136597633 -12185839 + MIR SINE MIR 49 113 -149 726 140 0 0 chr11 136597636 136597743 -12185729 - AluSg/x SINE Alu -14 296 190 658 281 125 48 chr11 136697792 136697855 -12085617 + L2 LINE L2 1648 1705 -1609 2452 78 3 0 chr11 136697855 136698162 -12085310 + AluSq SINE Alu 1 308 -5 658 281 125 48 chr11 136698162 136698617 -12084855 + L2 LINE L2 1705 2206 -1108 589 281 98 33 chr11 136699029 136699449 -12084023 - L1ME3A LINE L1 -337 6069 5623 624 287 41 21 chr11 136699475 136699813 -12083659 - L1ME3A LINE L1 -807 5575 5231 25 0 0 0 chr11 136699817 136699842 -12083630 + AT_rich Low_complexity Low_complexity 1 25 0 357 269 94 17 chr11 136700007 136700241 -12083231 - L1ME3A LINE L1 -1439 4943 4692 260 280 13 13 chr11 136700573 136700648 -12082824 - L1ME3A LINE L1 -2032 4350 4276 491 345 67 38 chr11 136700826 136700953 -12082519 - L1ME3A LINE L1 -2739 3643 3521 2351 161 16 23 chr11 136700953 136701382 -12082090 + MSTB LTR MaLR 1 426 0 491 345 67 38 chr11 136701382 136701836 -12081636 - L1ME3A LINE L1 -2861 3521 3045 240 310 100 25 chr11 136701895 136702095 -12081377 - L1ME3A LINE L1 -3435 2947 2733 316 310 44 23 chr11 136702252 136702468 -12081004 - L1ME3A LINE L1 -3833 2549 2331 316 327 80 0 chr11 136702755 136702954 -12080518 - HAL1 LINE L1 -838 1669 1455 635 304 81 32 chr11 136703138 136703703 -12079769 - L1ME3A LINE L1 -5006 1366 774 272 236 28 0 chr11 136704362 136704434 -12079038 + Charlie7 DNA MER1_type 28 101 -2511 915 257 73 61 chr11 136704549 136705139 -12078333 - L2 LINE L2 -28 3285 2681 552 141 0 0 chr11 136705139 136705224 -12078248 - AluJ/FLAM SINE Alu -227 85 1 211 223 66 141 chr11 136705225 136705281 -12078191 - L2 LINE L2 -624 2690 2646 1963 108 7 52 chr11 136705281 136705588 -12077884 + AluSq SINE Alu 1 293 -20 211 223 66 141 chr11 136705588 136705652 -12077820 - L2 LINE L2 -668 2646 2579 258 322 175 17 chr11 136706220 136706397 -12077075 + MIR SINE MIR 46 250 -12 908 206 65 40 chr11 136706826 136707073 -12076399 + MLT1B LTR MaLR 2 254 -136 1319 279 113 30 chr11 136707283 136707825 -12075647 + ERVL LTR ERVL 2 588 -5176 400 219 0 20 chr11 136707798 136707901 -12075571 + L1MA6 LINE L1 6168 6267 -30 * 4175 234 13 7 chr11 136708009 136708994 -12074478 + ERVL LTR ERVL 583 1622 -4142 405 288 84 51 chr11 136708995 136709008 -12074464 - MIR SINE MIR -13 249 238 4120 133 46 14 chr11 136709008 136709708 -12073764 - MER72 LTR ERV1 0 722 1 405 288 84 51 chr11 136709708 136709909 -12073563 - MIR SINE MIR -24 238 28 424 335 21 37 chr11 136711085 136711276 -12072196 - MER5A DNA MER1_type -1 188 1 351 359 37 69 chr11 136712707 136713272 -12070200 + HAL1 LINE L1 182 724 -1783 207 0 0 0 chr11 136713272 136713295 -12070177 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 351 359 37 69 chr11 136713295 136713397 -12070075 + HAL1 LINE L1 724 828 -1679 222 165 58 0 chr11 136713397 136713500 -12069972 + (TCTA)n Simple_repeat Simple_repeat 3 111 0 343 276 59 79 chr11 136713502 136713705 -12069767 + HAL1 LINE L1 842 1040 -1467 687 271 35 62 chr11 136713761 136714180 -12069292 + L1MEc LINE L1 1237 1641 -4755 2593 78 3 0 chr11 136714180 136714527 -12068945 + L1PA6 LINE L1 5804 6151 -3 687 271 35 62 chr11 136714527 136714623 -12068849 + L1MEc LINE L1 1641 1738 -4658 3243 258 80 85 chr11 136714919 136718406 -12065066 + L1MEc LINE L1 2122 5557 -682 333 0 0 0 chr11 136718406 136718443 -12065029 + (CA)n Simple_repeat Simple_repeat 2 38 0 3243 258 80 85 chr11 136718443 136719110 -12064362 + L1MEc LINE L1 5557 6226 -13 4306 220 28 53 chr11 136719158 136720412 -12063060 + L1MC3 LINE L1 5422 6643 -1142 3841 163 31 16 chr11 136720412 136721165 -12062307 + LTR1B LTR ERV1 1 785 0 2902 220 110 94 chr11 136721165 136721400 -12062072 + L1MC3 LINE L1 6640 6870 -915 209 33 33 0 chr11 136721400 136721430 -12062042 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2902 220 110 94 chr11 136721430 136721653 -12061819 + L1MC3 LINE L1 6870 7088 -697 248 329 13 0 chr11 136721653 136721729 -12061743 + MLT1F1 LTR MaLR 35 111 -456 2902 220 110 94 chr11 136721729 136722290 -12061182 + L1MC3 LINE L1 7088 7753 -32 794 296 145 48 chr11 136722359 136722475 -12060997 + HAL1 LINE L1 1164 1267 -1240 190 28 28 56 chr11 136722475 136722511 -12060961 + (TAA)n Simple_repeat Simple_repeat 2 36 0 794 296 145 48 chr11 136722511 136723350 -12060122 + HAL1 LINE L1 1267 2212 -295 23 0 0 0 chr11 136724836 136724859 -12058613 + AT_rich Low_complexity Low_complexity 1 23 0 345 347 34 16 chr11 136725030 136725158 -12058314 + MIR SINE MIR 19 147 -61 216 274 41 41 chr11 136726166 136726239 -12057233 - L3b LINE CR1 -141 1442 1370 16648 148 38 10 chr11 136726665 136729609 -12053863 + Tigger3(Golem) DNA MER2_type 2 3028 -1 858 97 0 0 chr11 136730049 136730163 -12053309 - AluSg/x SINE Alu -9 301 188 2180 168 64 0 chr11 136730225 136730630 -12052842 + MSTB1 LTR MaLR 1 431 -1 4724 189 34 64 chr11 136730894 136732723 -12050749 + L1MA10 LINE L1 4562 6332 -2 2215 122 0 0 chr11 136733393 136733705 -12049767 + AluSx SINE Alu 1 312 0 565 279 77 65 chr11 136734277 136734707 -12048765 + MLT1J2 LTR MaLR 1 444 -2 226 311 33 0 chr11 136736819 136736880 -12046592 + MIR3 SINE MIR 13 75 -133 422 243 360 0 chr11 136736901 136737090 -12046382 - MIR SINE MIR 0 262 6 409 341 8 0 chr11 136737172 136737298 -12046174 - L2 LINE L2 0 3313 3187 200 260 219 0 chr11 136738539 136738612 -12044860 - MIR3 SINE MIR -12 196 108 2215 104 0 3 chr11 136738655 136738952 -12044520 + AluSx SINE Alu 1 296 -16 198 0 0 0 chr11 136739588 136739610 -12043862 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 470 310 56 35 chr11 136739615 136739847 -12043625 - MLT1K LTR MaLR -32 556 320 401 242 102 102 chr11 136740808 136741072 -12042400 - MLT1L LTR MaLR -322 293 30 180 0 0 0 chr11 136741749 136741769 -12041703 + (ATG)n Simple_repeat Simple_repeat 2 21 0 543 334 26 61 chr11 136742043 136742504 -12040968 - MLT1K LTR MaLR -2 586 142 291 375 23 8 chr11 136743485 136743613 -12039859 + MIR SINE MIR 21 150 -58 210 293 41 65 chr11 136743621 136743744 -12039728 - MER5A DNA MER1_type -27 162 43 23 0 0 0 chr11 136743853 136743876 -12039596 + AT_rich Low_complexity Low_complexity 1 23 0 226 348 43 14 chr11 136744298 136744439 -12039033 - Charlie8 DNA MER1_type -2221 196 52 237 185 43 11 chr11 136746145 136746237 -12037235 + (TA)n Simple_repeat Simple_repeat 2 96 0 307 329 92 30 chr11 136746303 136746598 -12036874 + HAL1 LINE L1 270 582 -1925 305 306 75 0 chr11 136746689 136746823 -12036649 + HAL1 LINE L1 794 937 -1570 466 296 68 68 chr11 136746837 136747708 -12035764 + HAL1 LINE L1 893 1763 -744 540 343 69 28 chr11 136747778 136748384 -12035088 + L1M4 LINE L1 4177 4807 -1339 378 0 0 0 chr11 136748390 136748432 -12035040 + (CA)n Simple_repeat Simple_repeat 1 42 0 10273 205 76 24 chr11 136748514 136750296 -12033176 - L1MC3 LINE L1 -67 7718 6030 3748 115 9 59 chr11 136750296 136750940 -12032532 - LTR9 LTR ERV1 0 612 1 10273 205 76 24 chr11 136750940 136752200 -12031272 - L1MC3 LINE L1 -1755 6030 4328 454 49 65 24 chr11 136752204 136752327 -12031145 + (TA)n Simple_repeat Simple_repeat 2 129 0 616 211 8 4 chr11 136752390 136752557 -12030915 - L1MCb LINE L1 -1868 4696 4527 533 297 127 9 chr11 136752553 136752765 -12030707 - L1MCb LINE L1 -2397 4167 3931 * 206 0 69 0 chr11 136752765 136752794 -12030678 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 858 194 19 57 chr11 136752796 136753007 -12030465 - AluJb SINE Alu -25 287 85 3566 258 58 56 chr11 136753012 136753551 -12029921 - L1MCb LINE L1 -2631 3933 3397 4809 101 0 0 chr11 136753551 136754223 -12029249 - L1PA14 LINE L1 -4 6157 5486 3566 258 58 56 chr11 136754223 136757538 -12025934 - L1MCb LINE L1 -3167 3397 3 236 196 0 20 chr11 136758242 136758293 -12025179 + L1ME LINE L1 339 388 -5682 1315 184 29 97 chr11 136758338 136758719 -12024753 + MLT1A1 LTR MaLR 11 365 0 5371 121 13 30 chr11 136758846 136759960 -12023512 + L1PB1 LINE L1 5044 6147 -4 1002 264 34 34 chr11 136760014 136760511 -12022961 + L1ME LINE L1 497 993 -5077 356 360 0 17 chr11 136761117 136761193 -12022279 - L1M4 LINE L1 -696 5478 5402 4091 187 55 59 chr11 136761193 136761928 -12021544 - Tigger6a DNA MER2_type -514 1083 352 1439 194 49 17 chr11 136761928 136762047 -12021425 + AluJo SINE Alu 1 115 -197 391 53 67 0 chr11 136762047 136762122 -12021350 + (TA)n Simple_repeat Simple_repeat 2 81 0 1439 194 49 17 chr11 136762122 136762290 -12021182 + AluJo SINE Alu 115 297 -15 4091 187 55 59 chr11 136762290 136762641 -12020831 - Tigger6a DNA MER2_type -1245 352 1 356 360 0 17 chr11 136762641 136762774 -12020698 - L1M4 LINE L1 -772 5402 5273 277 258 98 77 chr11 136763592 136763879 -12019593 - L1M4 LINE L1 -1983 4163 3871 247 0 25 50 chr11 136764141 136764181 -12019291 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 335 260 123 27 chr11 136765133 136765279 -12018193 + L2 LINE L2 3154 3313 0 279 236 22 22 chr11 136765994 136766083 -12017389 + (TG)n Simple_repeat Simple_repeat 1 89 0 6449 128 38 30 chr11 136766615 136767238 -12016234 - Tigger3b DNA MER2_type -1804 1224 586 2396 85 0 19 chr11 136767238 136767555 -12015917 - AluY SINE Alu 0 311 1 6449 128 38 30 chr11 136767555 136768146 -12015326 - Tigger3b DNA MER2_type -2442 586 1 330 265 115 70 chr11 136768842 136769092 -12014380 + MIR SINE MIR 4 261 -1 355 302 50 7 chr11 136769795 136769934 -12013538 - MLT1H LTR MaLR -13 536 392 904 81 0 0 chr11 136770371 136770526 -12012946 + AluY SINE Alu 172 326 0 376 265 108 33 chr11 136770635 136770941 -12012531 - L1ME4a LINE L1 -41 6080 5752 191 365 9 19 chr11 136770973 136771080 -12012392 - L2 LINE L2 -8 3305 3200 412 303 100 55 chr11 136771423 136771822 -12011650 - L1ME4a LINE L1 -848 5298 4882 461 325 57 10 chr11 136771983 136772177 -12011295 + MIR SINE MIR 10 212 -50 2101 109 0 11 chr11 136772912 136773027 -12010445 + AluSx SINE Alu 21 136 -176 2472 53 0 3 chr11 136773027 136773326 -12010146 + AluY SINE Alu 1 298 -13 2101 109 0 11 chr11 136773326 136773494 -12009978 + AluSx SINE Alu 136 301 -11 287 351 16 18 chr11 136774682 136774822 -12008650 + MIR SINE MIR 45 184 -60 1661 217 66 3 chr11 136774897 136775275 -12008197 + MER6 DNA MER2_type 2 403 -462 2127 120 0 19 chr11 136775276 136775585 -12007887 + AluSx SINE Alu 1 303 -9 1932 159 17 3 chr11 136775602 136775955 -12007517 + MER6 DNA MER2_type 506 863 -2 306 344 115 10 chr11 136776596 136776788 -12006684 - MIR SINE MIR -2 260 49 196 29 0 57 chr11 136778272 136778307 -12005165 + (TTTTA)n Simple_repeat Simple_repeat 1 33 0 1223 161 13 4 chr11 136778307 136778537 -12004935 - L1PA16 LINE L1 -26 6140 5909 269 310 108 22 chr11 136779090 136779318 -12004154 + MIR SINE MIR 15 256 -6 1777 140 87 3 chr11 136781493 136781779 -12001693 - AluSg SINE Alu 0 310 1 626 223 64 16 chr11 136782374 136782562 -12000910 + MER3 DNA MER1_type 3 199 -10 220 419 7 0 chr11 136782954 136783090 -12000382 - L2 LINE L2 -609 2705 2569 283 271 110 121 chr11 136783445 136783726 -11999746 + L2 LINE L2 2989 3266 -6 1696 153 80 40 chr11 136784550 136784950 -11998522 - MSTC LTR MaLR -2 426 11 194 103 128 103 chr11 136785387 136785465 -11998007 - MIR SINE MIR -135 127 48 368 269 39 31 chr11 136785621 136785751 -11997721 + L2 LINE L2 3182 3312 -1 523 286 48 12 chr11 136787558 136787726 -11995746 + MIR3 SINE MIR 33 206 -2 222 351 122 34 chr11 136789313 136789461 -11994011 - MIR3 SINE MIR -27 181 21 181 345 23 79 chr11 136789939 136790116 -11993356 + L2 LINE L2 2808 2974 -298 1791 187 10 7 chr11 136790403 136790703 -11992769 + AluJo SINE Alu 1 301 -11 1681 146 0 8 chr11 136791861 136792114 -11991358 - AluSg SINE Alu 0 310 60 195 333 11 30 chr11 136792367 136792484 -11990988 - MIR SINE MIR -71 137 22 32 0 0 0 chr11 136793424 136793456 -11990016 + AT_rich Low_complexity Low_complexity 1 32 0 636 309 159 32 chr11 136793770 136794210 -11989262 + L2 LINE L2 2816 3311 -2 2058 112 0 0 chr11 136794394 136794700 -11988772 - AluSc SINE Alu 0 307 2 1127 186 45 4 chr11 136795210 136795457 -11988015 - LTR39 LTR ERV1 0 783 527 * 1403 203 58 53 chr11 136795449 136795844 -11987628 - LTR39 LTR ERV1 -386 397 1 24 0 0 0 chr11 136796219 136796243 -11987229 + AT_rich Low_complexity Low_complexity 1 24 0 345 385 28 75 chr11 136799474 136799835 -11983637 - L2 LINE L2 -21 3251 2908 252 257 38 38 chr11 136799976 136800081 -11983391 - L2 LINE L2 -580 2734 2630 681 296 35 0 chr11 136800120 136800289 -11983183 - MIR SINE MIR -14 248 74 4843 120 9 8 chr11 136800318 136801066 -11982406 - L1PA16 LINE L1 -9 6157 5409 2277 99 0 3 chr11 136801094 136801388 -11982084 - AluSq SINE Alu -20 293 1 1328 214 30 26 chr11 136801419 136801722 -11981750 - AluJb SINE Alu -8 304 1 185 240 20 0 chr11 136802402 136802452 -11981020 + L2 LINE L2 3263 3313 0 2454 68 3 0 chr11 136802636 136802932 -11980540 + AluY SINE Alu 1 297 -14 3097 228 40 20 chr11 136803073 136804420 -11979052 + L1MB7 LINE L1 4807 6181 -3 208 93 23 23 chr11 136805596 136805639 -11977833 + (CAA)n Simple_repeat Simple_repeat 2 44 0 180 219 151 41 chr11 136805940 136806013 -11977459 - L2 LINE L2 -37 3235 3155 212 286 0 0 chr11 136806655 136806711 -11976761 + (TA)n Simple_repeat Simple_repeat 2 57 0 195 42 0 0 chr11 136807102 136807126 -11976346 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 2168 169 49 0 chr11 136808203 136808611 -11974861 + MSTA LTR MaLR 1 428 0 230 254 336 18 chr11 136809453 136809563 -11973909 - MIR SINE MIR -30 232 88 186 259 114 89 chr11 136809890 136810048 -11973424 + MIR3 SINE MIR 23 184 -24 213 121 0 0 chr11 136810529 136810562 -11972910 + (TG)n Simple_repeat Simple_repeat 2 34 0 50 80 0 0 chr11 136811861 136811974 -11971498 + AT_rich Low_complexity Low_complexity 1 113 0 21 0 0 0 chr11 136812015 136812036 -11971436 + AT_rich Low_complexity Low_complexity 1 21 0 262 333 67 27 chr11 136813913 136814063 -11969409 - MIR SINE MIR -90 172 17 433 321 29 22 chr11 136814354 136814491 -11968981 + L2 LINE L2 3134 3271 -1 1647 182 7 7 chr11 136815575 136815866 -11967606 + AluJo SINE Alu 1 291 -21 2113 128 3 23 chr11 136815871 136816177 -11967295 + AluSx SINE Alu 1 300 -12 234 0 0 0 chr11 136818386 136818412 -11965060 + (TC)n Simple_repeat Simple_repeat 2 27 0 376 299 79 59 chr11 136819729 136820224 -11963248 - LTR33 LTR ERVL 0 521 17 318 299 39 0 chr11 136820315 136820442 -11963030 - MER94 DNA DNA 0 134 3 2272 114 3 0 chr11 136820513 136820819 -11962653 + AluSp SINE Alu 1 307 -6 1107 298 68 17 chr11 136820905 136821414 -11962058 + L2 LINE L2 2777 3312 -1 267 321 0 71 chr11 136822384 136822524 -11960948 - MIR SINE MIR -113 149 20 2612 49 0 0 chr11 136823294 136823600 -11959872 + AluY SINE Alu 1 306 -5 263 272 263 0 chr11 136823838 136823952 -11959520 + MER5A DNA MER1_type 46 189 0 468 318 99 9 chr11 136824648 136824871 -11958601 + MIR SINE MIR 20 262 0 182 333 14 14 chr11 136824872 136824941 -11958531 - L2 LINE L2 -1 3312 3244 263 246 0 123 chr11 136825732 136825846 -11957626 + MIR3 SINE MIR 102 201 -7 216 320 46 65 chr11 136826499 136826652 -11956820 - L3 LINE CR1 -20 1557 1408 808 149 54 0 chr11 136826691 136826839 -11956633 + L1MA3 LINE L1 6150 6305 0 21 0 0 0 chr11 136826840 136826861 -11956611 + AT_rich Low_complexity Low_complexity 1 21 0 334 281 58 29 chr11 136827050 136827189 -11956283 + MIR SINE MIR 1 143 -119 201 375 40 32 chr11 136827356 136827607 -11955865 - L3 LINE CR1 -324 1253 1001 1040 138 0 11 chr11 136828759 136829121 -11954351 + (TTCC)n Simple_repeat Simple_repeat 1 538 0 835 167 4 12 chr11 136829124 136829392 -11954080 + CT-rich Low_complexity Low_complexity 1 265 0 2089 90 6 84 chr11 136829459 136829781 -11953691 - AluSq SINE Alu -16 297 1 303 28 0 0 chr11 136829867 136829903 -11953569 + (CA)n Simple_repeat Simple_repeat 2 37 0 195 42 0 0 chr11 136830660 136830684 -11952788 + (TG)n Simple_repeat Simple_repeat 1 24 0 297 89 0 0 chr11 136830684 136830729 -11952743 + (GA)n Simple_repeat Simple_repeat 2 46 0 232 250 0 0 chr11 136830781 136830837 -11952635 - MLT1K LTR MaLR -9 579 524 302 265 108 0 chr11 136831032 136831115 -11952357 - L2 LINE L2 -34 3279 3188 297 0 0 0 chr11 136831138 136831171 -11952301 + (CA)n Simple_repeat Simple_repeat 1 33 0 391 281 52 59 chr11 136832092 136832245 -11951227 + MIR SINE MIR 28 179 -83 1977 147 0 17 chr11 136832688 136832987 -11950485 - AluSg SINE Alu -16 294 1 21 0 0 0 chr11 136832989 136833010 -11950462 + AT_rich Low_complexity Low_complexity 1 21 0 228 322 76 35 chr11 136834805 136834976 -11948496 - MIR SINE MIR -66 196 19 21 36 0 0 chr11 136835315 136835343 -11948129 + AT_rich Low_complexity Low_complexity 1 28 0 375 23 0 0 chr11 136835893 136835937 -11947535 + (TGAA)n Simple_repeat Simple_repeat 2 45 0 217 361 50 8 chr11 136837135 136837254 -11946218 + L2 LINE L2 2930 3053 -219 207 204 41 20 chr11 136837299 136837348 -11946124 - L2 LINE L2 0 3313 3264 358 326 49 46 chr11 136837631 136837916 -11945556 - L2 LINE L2 -430 2884 2599 2104 136 7 0 chr11 136838160 136838470 -11945002 + AluSx SINE Alu 1 312 0 228 263 44 18 chr11 136839295 136839409 -11944063 - MARNA DNA Mariner -59 527 411 642 276 65 9 chr11 136840854 136841068 -11942404 - MIR SINE MIR 0 262 37 1893 109 106 0 chr11 136841662 136841936 -11941536 - AluSq SINE Alu -10 303 1 683 307 79 30 chr11 136842094 136842498 -11940974 + LTR16A LTR ERVL 27 450 0 2321 81 0 19 chr11 136843807 136844117 -11939355 + AluY SINE Alu 3 306 -5 2335 117 0 0 chr11 136844128 136844436 -11939036 + AluSp SINE Alu 1 308 -5 521 238 90 0 chr11 136844501 136844623 -11938849 - MER5A DNA MER1_type -56 133 1 2293 97 0 3 chr11 136844772 136845072 -11938400 + AluSc SINE Alu 1 299 -10 186 103 0 0 chr11 136846637 136846666 -11936806 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 419 306 18 0 chr11 136847094 136847205 -11936267 - MER81 DNA DNA -1 113 1 1773 179 21 6 chr11 136847240 136847580 -11935892 - L1MB7 LINE L1 -9 6175 5831 3694 245 68 22 chr11 136847603 136847766 -11935706 - L1M4 LINE L1 -2443 4201 4047 451 128 26 0 chr11 136847766 136847844 -11935628 - MADE1 DNA Mariner 0 80 1 3694 245 68 22 chr11 136847844 136848910 -11934562 - L1M4 LINE L1 -2597 4047 2887 2480 126 3 3 chr11 136848910 136849274 -11934198 + THE1B LTR MaLR 1 364 0 3694 245 68 22 chr11 136849274 136849568 -11933904 - L1M4 LINE L1 -3757 2887 2608 2510 275 34 35 chr11 136849567 136850440 -11933032 - L1M4 LINE L1 -5655 887 16 * 5124 200 22 3 chr11 136850508 136851828 -11931644 - L1MC1 LINE L1 0 6333 4991 2281 179 19 37 chr11 136851915 136852380 -11931092 - MLT2B2 LTR ERVL -50 465 9 927 142 0 0 chr11 136852439 136852601 -11930871 - L1MC1 LINE L1 -1198 4948 4787 398 304 36 14 chr11 136852680 136852818 -11930654 + L2 LINE L2 3173 3313 0 222 62 0 0 chr11 136853233 136853265 -11930207 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 247 259 82 0 chr11 136855031 136855116 -11928356 + L2 LINE L2 3186 3277 -36 22 56 0 0 chr11 136855256 136855292 -11928180 + AT_rich Low_complexity Low_complexity 1 36 0 295 336 136 14 chr11 136855775 136855995 -11927477 - MIR SINE MIR 0 262 16 285 279 27 36 chr11 136856194 136856332 -11927140 + MIR SINE MIR 6 142 -66 21 36 0 0 chr11 136857015 136857043 -11926429 + AT_rich Low_complexity Low_complexity 1 28 0 188 360 34 22 chr11 136857264 136857353 -11926119 - MIR SINE MIR -15 247 158 480 202 53 0 chr11 136857356 136857450 -11926022 + MER58 DNA MER1_type 1 99 -242 494 151 21 0 chr11 136857462 136857555 -11925917 + MER58 DNA MER1_type 2318 2412 -8 224 411 14 0 chr11 136857625 136857698 -11925774 - MIR SINE MIR -187 75 2 739 188 176 0 chr11 136858447 136858612 -11924860 + AluJb SINE Alu 1 194 -118 281 308 51 15 chr11 136860566 136860701 -11922771 - MIR SINE MIR -104 104 20 1994 309 128 30 chr11 136861112 136862385 -11921087 + L2 LINE L2 1418 2815 -499 405 311 73 78 chr11 136862385 136862755 -11920717 + L2 LINE L2 2934 3301 -12 290 292 0 0 chr11 136863430 136863502 -11919970 + L2 LINE L2 3242 3313 0 2802 61 3 11 chr11 136863877 136864252 -11919220 - L1PA8 LINE L1 0 6172 5801 21 0 0 0 chr11 136864693 136864714 -11918758 + AT_rich Low_complexity Low_complexity 1 21 0 521 32 0 0 chr11 136864717 136864780 -11918692 - AluY SINE Alu -237 73 11 1966 48 0 0 chr11 136864781 136865010 -11918462 + AluY SINE Alu 70 298 -13 2217 125 0 0 chr11 136866690 136866993 -11916479 + AluSc SINE Alu 1 303 -6 2101 109 27 0 chr11 136867721 136868014 -11915458 - AluSx SINE Alu -11 301 1 203 286 13 26 chr11 136869029 136869106 -11914366 + GA-rich Low_complexity Low_complexity 3 78 0 807 151 0 8 chr11 136869382 136869508 -11913964 + FAM SINE Alu 20 144 -41 301 213 11 11 chr11 136869606 136869700 -11913772 + GA-rich Low_complexity Low_complexity 1 94 0 267 31 0 0 chr11 136870178 136870210 -11913262 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 31 82 0 0 chr11 136870562 136870635 -11912837 + AT_rich Low_complexity Low_complexity 1 73 0 462 305 58 70 chr11 136871505 136872006 -11911466 - L1M4 LINE L1 -743 5403 4909 462 163 0 23 chr11 136872040 136872126 -11911346 + FLAM_C SINE Alu 37 120 -23 553 288 53 28 chr11 136872278 136872674 -11910798 - L1M4 LINE L1 -1443 4703 4298 2382 87 148 5 chr11 136872674 136873066 -11910406 + LTR7 LTR ERV1 1 448 -2 25064 96 55 17 chr11 136873068 136876914 -11906558 + HERVH LTR ERV1 1 3993 -3720 4401 139 0 1 chr11 136876916 136877579 -11905893 + HERVH LTR ERV1 4488 5149 -2564 1366 139 19 0 chr11 136877580 136877796 -11905676 + HERVH LTR ERV1 5600 5819 -1894 1573 82 65 0 chr11 136877796 136878027 -11905445 + HERVH LTR ERV1 7324 7569 -144 22 70 0 0 chr11 136878673 136878716 -11904756 + AT_rich Low_complexity Low_complexity 1 43 0 350 338 69 45 chr11 136879392 136879812 -11903660 - HAL1b LINE L1 -821 527 98 505 240 17 51 chr11 136881978 136882153 -11901319 + L1ME3 LINE L1 5718 5886 -276 683 297 79 68 chr11 136883580 136883945 -11899527 + L1MB1 LINE L1 457 1448 -5205 21 71 0 0 chr11 136884057 136884099 -11899373 + AT_rich Low_complexity Low_complexity 1 42 0 2384 256 58 30 chr11 136884198 136884489 -11898983 + L1MB1 LINE L1 2531 2813 -3919 1972 151 7 0 chr11 136884489 136884793 -11898679 - AluJo SINE Alu -6 306 1 2384 256 58 30 chr11 136884793 136885621 -11897851 + L1MB1 LINE L1 2813 3677 -3055 5976 200 18 23 chr11 136885631 136887417 -11896055 + L1MB1 LINE L1 4490 6259 -495 5014 84 22 6 chr11 136887425 136888139 -11895333 - L1PA13 LINE L1 -19 6144 5419 2692 149 35 10 chr11 136888139 136888661 -11894811 + L1MB1 LINE L1 6246 6780 0 2158 108 24 0 chr11 136888744 136889041 -11894431 + AluSp SINE Alu 1 304 -9 203 233 0 0 chr11 136889229 136889272 -11894200 + GA-rich Low_complexity Low_complexity 1 43 0 420 297 80 36 chr11 136889339 136889588 -11893884 - L1M4 LINE L1 -768 5378 5119 186 305 11 53 chr11 136890373 136890468 -11893004 - MIR SINE MIR -79 183 93 911 113 0 0 chr11 136890698 136890831 -11892641 + L1PA11 LINE L1 6041 6173 -1 225 278 19 0 chr11 136890836 136890890 -11892582 + MIR SINE MIR 92 146 -62 425 312 98 10 chr11 136890917 136891122 -11892350 + MIR SINE MIR 34 256 -6 358 275 26 1 chr11 136891422 136891549 -11891923 - L1ME LINE L1 -652 5512 5384 274 221 65 39 chr11 136891559 136891636 -11891836 + L2 LINE L2 3235 3313 0 1462 196 25 22 chr11 136892065 136892382 -11891090 - MER74A LTR ERVL 0 558 241 318 265 53 15 chr11 136892495 136892627 -11890845 + L3 LINE CR1 1275 1411 -166 202 274 20 0 chr11 136893643 136893694 -11889778 + L2 LINE L2 3255 3306 -7 240 35 0 0 chr11 136894933 136894962 -11888510 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 207 250 0 0 chr11 136895024 136895072 -11888400 + (ATG)n Simple_repeat Simple_repeat 3 50 0 190 331 84 28 chr11 136895335 136895513 -11887959 - MIR SINE MIR -53 209 22 199 222 127 48 chr11 136895700 136895763 -11887709 + MIR SINE MIR 117 184 -78 405 102 0 0 chr11 136896669 136896728 -11886744 + (CA)n Simple_repeat Simple_repeat 2 60 0 28 0 0 0 chr11 136898126 136898154 -11885318 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr11 136898228 136898249 -11885223 + AT_rich Low_complexity Low_complexity 1 21 0 2321 266 64 53 chr11 136898396 136899302 -11884170 + L1M4b LINE L1 11 926 -5933 1299 231 42 46 chr11 136899849 136900129 -11883343 + L1M4b LINE L1 1254 1533 -5322 1871 185 0 0 chr11 136900129 136900426 -11883046 + AluJo SINE Alu 1 297 -15 1299 231 42 46 chr11 136900426 136900691 -11882781 + L1M4b LINE L1 1533 1797 -5058 4726 205 49 28 chr11 136900691 136901154 -11882318 + L1MC1 LINE L1 4475 4927 -1406 180 0 0 0 chr11 136901154 136901174 -11882298 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 4726 205 49 28 chr11 136901174 136902530 -11880942 + L1MC1 LINE L1 4927 6333 0 1301 299 30 24 chr11 136902525 136903163 -11880309 + L1M4b LINE L1 1775 2416 -4543 * 21 0 0 0 chr11 136903367 136903388 -11880084 + AT_rich Low_complexity Low_complexity 1 21 0 405 313 42 8 chr11 136903529 136903890 -11879582 + L1M4b LINE L1 2646 3018 -3941 5177 173 31 29 chr11 136903897 136905656 -11877816 + L1MA4A LINE L1 4534 6292 -11 7045 166 35 57 chr11 136905677 136906077 -11877395 + L1PA7 LINE L1 3018 3425 -3540 2478 49 20 0 chr11 136906077 136906381 -11877091 - AluY SINE Alu -1 310 1 7045 166 35 57 chr11 136906381 136909931 -11873541 + L1PA7 LINE L1 3425 6869 -96 553 287 115 15 chr11 136910033 136910294 -11873178 - LTR50 LTR ERVL -208 587 301 35 41 0 0 chr11 136910533 136910582 -11872890 + AT_rich Low_complexity Low_complexity 1 49 0 7242 145 68 0 chr11 136911315 136912616 -11870856 - L1M1 LINE L1 -4656 2909 1521 516 149 65 52 chr11 136913324 136913478 -11869994 + LTR10B LTR ERV1 1 156 -391 1310 176 110 14 chr11 136913639 136914003 -11869469 + LTR10B LTR ERV1 126 524 -23 323 260 77 10 chr11 136914108 136914212 -11869260 - L1MCc LINE L1 -6416 423 313 338 359 93 24 chr11 136914409 136914819 -11868653 - L2 LINE L2 -1197 2117 1680 1122 116 0 0 chr11 136915510 136915665 -11867807 + AluSg/x SINE Alu 154 308 -4 3642 216 14 9 chr11 136915666 136916561 -11866911 + L1PA15-16 LINE L1 2059 2958 -3891 1693 165 75 6 chr11 136916664 136916998 -11866474 + MER41-int LTR ERV1 316 672 -6865 3084 156 66 0 chr11 136917004 136917531 -11865941 + MER41-int LTR ERV1 298 859 -5087 801 160 62 7 chr11 136917514 136917658 -11865814 + MER41-int LTR ERV1 1550 1701 -5836 * 216 0 0 0 chr11 136917658 136917682 -11865790 + (TC)n Simple_repeat Simple_repeat 1 24 0 3216 175 64 24 chr11 136917783 136918314 -11865158 - L1MC3 LINE L1 -58 7727 7154 2140 138 33 28 chr11 136918314 136918676 -11864796 - THE1B LTR MaLR 0 364 1 3216 175 64 24 chr11 136918676 136918925 -11864547 - L1MC3 LINE L1 -631 7154 6916 504 254 23 12 chr11 136919317 136919490 -11863982 - L1MCc LINE L1 -6179 244 70 3968 219 67 46 chr11 136920137 136921228 -11862244 + L1MB8 LINE L1 2367 3492 -2654 2365 57 7 3 chr11 136921228 136921524 -11861948 + AluY SINE Alu 1 297 -14 3968 219 67 46 chr11 136921524 136921741 -11861731 + L1MB8 LINE L1 3492 3703 -2443 2232 72 0 0 chr11 136921841 136922118 -11861354 - AluY SINE Alu -34 277 1 183 275 50 50 chr11 136922610 136922690 -11860782 - MIR SINE MIR -71 191 112 1149 271 78 22 chr11 136923672 136924522 -11858950 - L1ME2 LINE L1 -4 6162 5290 4174 106 56 0 chr11 136924767 136925389 -11858083 + HSMAR1 DNA Mariner 631 1287 0 537 337 216 7 chr11 136925961 136926374 -11857098 - L2 LINE L2 -337 2977 2479 180 417 17 25 chr11 136926637 136926757 -11856715 - MIR SINE MIR -126 136 18 21 57 0 0 chr11 136928945 136928980 -11854492 + AT_rich Low_complexity Low_complexity 1 35 0 794 292 62 68 chr11 136929109 136929622 -11853850 + L1MC3 LINE L1 73 582 -5814 3181 202 83 16 chr11 136929729 136931164 -11852308 + L1MB8 LINE L1 4621 6162 -16 557 206 58 95 chr11 136931167 136931356 -11852116 - MLT1E LTR MaLR -360 182 1 416 339 73 33 chr11 136931357 136931631 -11851841 + L1MC3 LINE L1 4123 4407 -1808 31 76 0 0 chr11 136931678 136931744 -11851728 + AT_rich Low_complexity Low_complexity 1 66 0 2273 98 0 7 chr11 136931747 136932044 -11851428 + AluSx SINE Alu 3 297 -15 374 264 70 103 chr11 136932044 136932385 -11851087 + L1MC3 LINE L1 4833 5162 -1053 475 252 22 7 chr11 136932513 136932680 -11850792 + L1MC3 LINE L1 5389 5518 -721 238 224 45 0 chr11 136932705 136932772 -11850700 + L1MC3 LINE L1 5945 6014 -1840 1171 187 150 0 chr11 136933361 136933655 -11849817 + MER58B DNA MER1_type 1 338 -3 525 293 102 5 chr11 136935302 136935507 -11847965 - MIR SINE MIR -32 230 6 193 366 43 0 chr11 136935912 136936005 -11847467 + L3 LINE CR1 461 557 -1020 298 358 0 0 chr11 136936034 136936129 -11847343 + MIR SINE MIR 47 141 -121 329 289 79 0 chr11 136936871 136936985 -11846487 - MIR SINE MIR -60 202 80 308 349 31 0 chr11 136937051 136937180 -11846292 + L3 LINE CR1 1444 1576 -1 22 35 0 0 chr11 136937693 136937722 -11845750 + AT_rich Low_complexity Low_complexity 1 29 0 334 333 110 37 chr11 136937735 136938089 -11845383 - L2 LINE L2 0 3313 2934 14206 138 14 8 chr11 136938143 136939545 -11843927 - Tigger1 DNA MER2_type 0 2418 995 2464 117 56 17 chr11 136939545 136939956 -11843516 - MSTA LTR MaLR -1 427 1 14206 138 14 8 chr11 136939956 136940957 -11842515 - Tigger1 DNA MER2_type -1423 995 1 242 370 22 0 chr11 136941104 136941196 -11842276 - MER5B DNA MER1_type -77 101 8 376 327 106 24 chr11 136942000 136942208 -11841264 - MIR SINE MIR -3 259 35 2309 85 0 79 chr11 136942357 136942697 -11840775 + AluSp SINE Alu 1 313 0 405 266 12 83 chr11 136942799 136942968 -11840504 - L2 LINE L2 -47 3266 3110 2184 117 0 10 chr11 136943320 136943629 -11839843 + AluSx SINE Alu 1 306 -6 280 247 4 42 chr11 136946085 136946170 -11837302 - MIR SINE MIR -65 143 77 345 208 28 0 chr11 136946230 136946302 -11837170 - MER45 DNA AcHobo -1474 107 34 272 227 30 0 chr11 136946727 136946793 -11836679 + GA-rich Low_complexity Low_complexity 2 69 0 247 300 64 0 chr11 136948348 136948458 -11835014 + L2 LINE L2 3193 3309 -4 279 272 54 33 chr11 136948474 136948566 -11834906 - MIR3 SINE MIR -40 168 75 2047 168 84 12 chr11 136948806 136949234 -11834238 + LOR1b LTR ERV1 1 459 -2 1059 224 31 0 chr11 136950688 136950916 -11832556 + MER46A DNA MER2_type 2 236 0 30 27 0 0 chr11 136951124 136951161 -11832311 + AT_rich Low_complexity Low_complexity 1 37 0 2672 91 14 6 chr11 136951981 136952342 -11831130 + THE1B LTR MaLR 1 364 0 227 133 22 0 chr11 136952452 136952497 -11830975 + (CATA)n Simple_repeat Simple_repeat 4 49 0 259 380 9 35 chr11 136952661 136952774 -11830698 + MIR SINE MIR 5 114 -148 222 156 0 0 chr11 136952836 136952881 -11830591 + (TTA)n Simple_repeat Simple_repeat 1 45 0 184 270 45 90 chr11 136952919 136953119 -11830353 + L2 LINE L2 2553 2743 -571 390 275 102 18 chr11 136953333 136953500 -11829972 - L2 LINE L2 0 3313 3133 290 67 22 0 chr11 136953682 136953727 -11829745 + (TG)n Simple_repeat Simple_repeat 1 46 0 2239 108 3 0 chr11 136954057 136954345 -11829127 - AluSp SINE Alu -14 299 11 364 264 21 118 chr11 136954851 136954995 -11828477 + MIR SINE MIR 45 174 -88 866 226 0 6 chr11 136956250 136956418 -11827054 - AluJ SINE Alu -17 295 129 364 239 23 0 chr11 136956439 136956527 -11826945 - L1MC4 LINE L1 -1339 6703 6614 320 322 0 0 chr11 136956449 136956539 -11826933 + L1MC4 LINE L1 6614 6703 -1339 * 197 196 20 0 chr11 136956539 136956590 -11826882 + (TATG)n Simple_repeat Simple_repeat 2 53 0 345 197 0 0 chr11 136956623 136956699 -11826773 + (TATG)n Simple_repeat Simple_repeat 1 76 0 674 189 0 0 chr11 136956699 136956826 -11826646 - AluJ SINE Alu -183 129 3 1537 170 79 88 chr11 136957470 136957900 -11825572 + MSTB LTR MaLR 1 426 0 194 54 0 54 chr11 136958507 136958544 -11824928 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 427 314 43 16 chr11 136958606 136958794 -11824678 - MIR SINE MIR -5 257 65 687 268 0 0 chr11 136958893 136959050 -11824422 - MER45A DNA AcHobo -1 177 21 2353 56 23 3 chr11 136960431 136960735 -11822737 - AluYb8 SINE Alu -8 310 1 580 304 32 73 chr11 136960956 136961269 -11822203 + L1ME LINE L1 5296 5595 -567 1673 179 17 37 chr11 136961269 136961635 -11821837 + MLT1A1 LTR MaLR 3 363 -2 462 185 63 32 chr11 136961649 136961810 -11821662 + L1ME LINE L1 5662 5822 -344 2846 104 3 6 chr11 136961875 136962240 -11821232 + THE1B LTR MaLR 1 364 0 9327 96 29 121 chr11 136962240 136963980 -11819492 + THE1B-int LTR MaLR 1 1580 0 2069 138 48 38 chr11 136963980 136964351 -11819121 + THE1C LTR MaLR 1 375 0 26 0 0 0 chr11 136964530 136964556 -11818916 + AT_rich Low_complexity Low_complexity 1 26 0 2831 90 6 3 chr11 136965656 136966010 -11817462 + THE1A LTR MaLR 1 355 0 243 0 0 0 chr11 136966209 136966236 -11817236 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 263 371 0 9 chr11 136966348 136966464 -11817008 + L1MDa LINE L1 21 135 -6405 1071 245 29 58 chr11 136967172 136967824 -11815648 + L1MDa LINE L1 898 1533 -4998 2339 30 40 17 chr11 136968358 136968654 -11814818 - AluYa5 SINE Alu -8 303 1 213 179 26 0 chr11 136968813 136968852 -11814620 + MIR3 SINE MIR 150 189 -19 369 342 63 16 chr11 136969058 136969248 -11814224 + MIR3 SINE MIR 7 205 -3 190 338 29 15 chr11 136969541 136969609 -11813863 + L3b LINE CR1 1506 1574 -9 381 300 10 0 chr11 136970292 136970392 -11813080 - MER5A DNA MER1_type -79 110 10 232 315 11 46 chr11 136970455 136970642 -11812830 + MIR SINE MIR 26 262 0 323 289 50 132 chr11 136971858 136972176 -11811296 - L2 LINE L2 0 3272 2981 201 294 15 15 chr11 136973338 136973406 -11810066 + GA-rich Low_complexity Low_complexity 6 73 0 1178 212 5 9 chr11 136974590 136974807 -11808665 + MER20 DNA MER1_type 1 216 -3 288 275 72 90 chr11 136975146 136975368 -11808104 - MIR SINE MIR -13 249 32 1633 242 3 8 chr11 136975792 136976148 -11807324 - MLT1F LTR MaLR -163 379 26 244 204 0 0 chr11 136977521 136977565 -11805907 + Tigger5 DNA MER2_type 93 136 -2187 * 1221 148 89 0 chr11 136977563 136977766 -11805706 + Tigger5 DNA MER2_type 2103 2323 0 395 352 6 0 chr11 136977766 136977925 -11805547 + MIR SINE MIR 101 260 -2 250 258 31 78 chr11 136979070 136979198 -11804274 - MER5A DNA MER1_type -21 168 47 3859 195 104 75 chr11 136979624 136980817 -11802655 + Charlie1a DNA MER1_type 1 1227 -228 269 303 190 31 chr11 136981144 136981339 -11802133 - L3 LINE CR1 -766 811 586 230 71 0 0 chr11 136981383 136981411 -11802061 - Charlie1 DNA MER1_type -837 1924 1897 425 243 56 0 chr11 136981461 136981568 -11801904 - Charlie1 DNA MER1_type -877 1884 1772 1021 127 6 11 chr11 136982544 136982725 -11800747 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 225 0 0 0 chr11 136982736 136982761 -11800711 + (TTCC)n Simple_repeat Simple_repeat 1 25 0 1710 112 15 115 chr11 136982761 136983091 -11800381 - AluSx SINE Alu -15 297 1 2233 176 52 5 chr11 136983198 136983579 -11799893 - MER57A LTR ERV1 -4 399 1 252 231 31 15 chr11 136985050 136985115 -11798357 + CT-rich Low_complexity Low_complexity 3 68 0 894 256 108 7 chr11 136985400 136985677 -11797795 - L1ME1 LINE L1 -5 6161 5857 331 253 0 0 chr11 136985841 136985924 -11797548 - L1MC4 LINE L1 -2190 5852 5770 205 282 241 31 chr11 136986084 136986279 -11797193 - MIR SINE MIR -6 256 21 2449 73 0 26 chr11 136988015 136988328 -11795144 - AluY SINE Alu -6 305 1 381 281 151 36 chr11 136989481 136989673 -11793799 + L2 LINE L2 3095 3308 -5 217 234 0 0 chr11 136990695 136990742 -11792730 + (TGAA)n Simple_repeat Simple_repeat 1 47 0 369 227 21 21 chr11 136990800 136990897 -11792575 - MIR SINE MIR -80 182 86 381 268 34 73 chr11 136991298 136991503 -11791969 - MIR SINE MIR -46 216 20 2702 185 36 57 chr11 136991738 136992409 -11791063 - L1MA9 LINE L1 -774 5372 4716 4809 145 22 70 chr11 136992415 136993402 -11790070 + L1MA9 LINE L1 5373 6312 0 275 180 0 0 chr11 136993992 136994042 -11789430 - L2 LINE L2 0 3313 3264 203 191 0 21 chr11 136994249 136994296 -11789176 + A-rich Low_complexity Low_complexity 3 48 0 286 301 18 61 chr11 136995463 136995626 -11787846 + L3 LINE CR1 1310 1465 -112 403 248 77 0 chr11 136995642 136995759 -11787713 - MER5A DNA MER1_type -63 126 1 452 43 43 0 chr11 136996055 136996124 -11787348 + (TAAAA)n Simple_repeat Simple_repeat 1 72 0 216 338 98 8 chr11 136996288 136996421 -11787051 + L3 LINE CR1 1432 1576 -1 505 207 52 22 chr11 136997770 136997905 -11785567 + MIR SINE MIR 53 191 -71 248 197 131 57 chr11 136998093 136998215 -11785257 - MLT1J LTR MaLR -19 492 362 1850 191 39 22 chr11 136998811 136999167 -11784305 + MLT1A1 LTR MaLR 4 365 0 237 250 18 0 chr11 136999167 136999223 -11784249 - MIR SINE MIR -3 259 203 259 231 100 107 chr11 136999438 136999617 -11783855 + MIR SINE MIR 15 191 -69 215 133 22 0 chr11 136999673 136999718 -11783754 + (CA)n Simple_repeat Simple_repeat 2 47 0 1947 135 11 0 chr11 137000037 137000319 -11783153 - AluSx SINE Alu -27 285 1 760 173 11 78 chr11 137000327 137000518 -11782954 + MER20 DNA MER1_type 38 215 -4 700 306 35 16 chr11 137001152 137001407 -11782065 - MIR SINE MIR 0 262 3 2294 201 28 8 chr11 137002466 137002934 -11780538 + MER31A LTR ERV1 5 481 -4 479 322 19 19 chr11 137003667 137003875 -11779597 - L3 LINE CR1 -156 1421 1214 24 67 0 0 chr11 137004343 137004388 -11779084 + AT_rich Low_complexity Low_complexity 1 45 0 204 304 148 15 chr11 137004389 137004524 -11778948 - MIR SINE MIR 0 262 110 1960 182 22 16 chr11 137006244 137006607 -11776865 - MLT1A1 LTR MaLR 0 365 1 349 315 97 23 chr11 137007677 137007893 -11775579 + MIR SINE MIR 1 232 -30 955 279 85 17 chr11 137008209 137008621 -11774851 - L1ME4a LINE L1 -204 5917 5478 1759 193 0 0 chr11 137008722 137009017 -11774455 - AluJb SINE Alu -15 297 3 206 118 0 0 chr11 137009407 137009441 -11774031 + (T)n Simple_repeat Simple_repeat 1 34 0 270 309 175 10 chr11 137009443 137009540 -11773932 + MER5B DNA MER1_type 12 124 -54 2122 119 20 3 chr11 137009567 137009870 -11773602 + AluSq SINE Alu 3 310 -3 224 200 17 0 chr11 137009928 137009988 -11773484 + GA-rich Low_complexity Low_complexity 4 64 0 234 264 19 0 chr11 137010350 137010403 -11773069 + L2 LINE L2 3251 3304 -9 1103 274 104 61 chr11 137011290 137011848 -11771624 - MLT1E LTR MaLR -5 588 7 7419 130 52 9 chr11 137012002 137013181 -11770291 + Tigger3b DNA MER2_type 2 1230 -1 2078 155 0 0 chr11 137013182 137013486 -11769986 - AluSg SINE Alu -6 304 1 239 310 0 0 chr11 137013530 137013601 -11769871 + GA-rich Low_complexity Low_complexity 4 74 0 189 271 34 0 chr11 137013775 137013834 -11769638 - MIR SINE MIR -1 261 201 371 269 157 8 chr11 137013907 137014041 -11769431 - MIR SINE MIR -73 189 36 306 50 0 0 chr11 137014251 137014291 -11769181 + (GA)n Simple_repeat Simple_repeat 1 40 0 518 261 15 0 chr11 137014652 137014782 -11768690 + MER94 DNA DNA 3 134 0 332 323 99 50 chr11 137014871 137015445 -11768027 - L2 LINE L2 -245 3068 2367 2253 119 3 0 chr11 137015482 137015785 -11767687 + AluSx SINE Alu 1 304 -8 257 267 37 15 chr11 137015834 137015969 -11767503 - LTR67 LTR ERVL -2 555 418 432 321 27 16 chr11 137017000 137017184 -11766288 - MIR SINE MIR -56 206 21 474 287 13 60 chr11 137017330 137017359 -11766113 + MER5A DNA MER1_type 38 67 -122 4991 124 30 26 chr11 137017359 137018403 -11765069 + L1PA16 LINE L1 5110 6157 -9 474 287 13 60 chr11 137018403 137018523 -11764949 + MER5A DNA MER1_type 67 180 -9 270 0 0 0 chr11 137018958 137018988 -11764484 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 200 365 87 26 chr11 137018999 137019114 -11764358 + MIR SINE MIR 31 152 -56 23 68 0 0 chr11 137019607 137019651 -11763821 + AT_rich Low_complexity Low_complexity 1 44 0 282 314 85 43 chr11 137021335 137021523 -11761949 - L2 LINE L2 -557 2757 2562 855 325 106 52 chr11 137022662 137023445 -11760027 + L2 LINE L2 1359 2201 -1113 1061 220 23 0 chr11 137023445 137023663 -11759809 - MER58A DNA MER1_type -1 223 1 855 325 106 52 chr11 137023663 137023813 -11759659 + L2 LINE L2 2201 2342 -972 1336 269 21 62 chr11 137023827 137024385 -11759087 + L2 LINE L2 2764 3296 -17 213 94 19 75 chr11 137024453 137024506 -11758966 + (CAAAAA)n Simple_repeat Simple_repeat 5 54 0 273 339 17 56 chr11 137024533 137024713 -11758759 + L2 LINE L2 2474 2646 -668 456 177 15 46 chr11 137024829 137024959 -11758513 + L1MA2 LINE L1 10 135 -7430 * 3990 186 65 7 chr11 137024955 137025714 -11757758 + L1MA2 LINE L1 1105 1907 -5658 14534 159 16 14 chr11 137025715 137031470 -11752002 + L1MA2 LINE L1 1960 7722 -1 24 0 0 0 chr11 137031470 137031494 -11751978 + AT_rich Low_complexity Low_complexity 1 24 0 482 330 78 62 chr11 137031545 137031892 -11751580 + L2 LINE L2 2842 3197 -75 240 35 0 0 chr11 137031892 137031921 -11751551 + (CA)n Simple_repeat Simple_repeat 1 29 0 482 330 78 62 chr11 137031921 137031973 -11751499 + L2 LINE L2 3197 3247 -25 5603 56 1 0 chr11 137032242 137032943 -11750529 + L1PA5 LINE L1 5451 6152 -2 404 219 118 0 chr11 137033454 137033573 -11749899 - MIR SINE MIR -90 172 40 26 0 0 0 chr11 137033814 137033840 -11749632 + AT_rich Low_complexity Low_complexity 1 26 0 331 368 93 24 chr11 137035020 137035267 -11748205 - L1MC4 LINE L1 -1014 7028 6765 240 277 10 0 chr11 137035446 137035547 -11747925 + MER113 DNA MER1_type? 120 221 -300 5882 171 32 156 chr11 137035620 137037591 -11745881 + MER52A LTR ERV1 1 1726 -29 6119 236 67 22 chr11 137037601 137039470 -11744002 + L1M4b LINE L1 20 1993 -4966 2244 113 0 7 chr11 137039470 137039770 -11743702 + AluSg SINE Alu 1 298 -12 6119 236 67 22 chr11 137039770 137040120 -11743352 + L1M4b LINE L1 1993 2326 -4633 21 57 0 0 chr11 137040193 137040228 -11743244 + AT_rich Low_complexity Low_complexity 1 35 0 27 29 0 0 chr11 137040390 137040424 -11743048 + AT_rich Low_complexity Low_complexity 1 34 0 754 230 33 46 chr11 137040491 137040743 -11742729 + L1M4b LINE L1 3850 4097 -2860 737 127 31 188 chr11 137040743 137040972 -11742500 - 7SK RNA RNA 0 193 1 754 230 33 46 chr11 137040972 137041110 -11742362 + L1M4b LINE L1 4097 4235 -2722 217 315 22 34 chr11 137041136 137041225 -11742247 - L2 LINE L2 -1337 1977 1890 2103 254 43 20 chr11 137041226 137041985 -11741487 + L1M4b LINE L1 4611 5387 -1570 570 187 0 0 chr11 137041987 137042078 -11741394 + AluJb SINE Alu 196 286 -26 378 210 10 10 chr11 137042090 137042190 -11741282 + L1M4b LINE L1 5382 5481 -1476 243 0 0 0 chr11 137042305 137042332 -11741140 + (GA)n Simple_repeat Simple_repeat 1 27 0 845 140 0 182 chr11 137042492 137042728 -11740744 + 7SK RNA RNA 1 193 0 191 281 94 0 chr11 137043176 137043240 -11740232 + L2 LINE L2 3169 3238 -34 279 93 0 0 chr11 137043718 137043761 -11739711 + (CA)n Simple_repeat Simple_repeat 1 43 0 310 253 111 20 chr11 137044666 137044765 -11738707 + L2 LINE L2 3119 3226 -46 262 295 0 13 chr11 137044789 137044867 -11738605 + GA-rich Low_complexity Low_complexity 2 78 0 751 205 105 11 chr11 137045388 137045517 -11737955 + MER3 DNA MER1_type 1 155 -54 207 0 0 0 chr11 137045517 137045540 -11737932 + (TTTTA)n Simple_repeat Simple_repeat 4 26 0 751 205 105 11 chr11 137045540 137045600 -11737872 + MER3 DNA MER1_type 155 208 -1 191 339 34 0 chr11 137046275 137046334 -11737138 - L2 LINE L2 -1 3271 3211 371 307 45 38 chr11 137047886 137048121 -11735351 - MIR SINE MIR -10 252 17 190 375 0 0 chr11 137048938 137049002 -11734470 - L2 LINE L2 -1 3312 3249 2043 141 0 0 chr11 137049020 137049310 -11734162 + AluSx SINE Alu 1 290 -22 436 301 35 7 chr11 137050256 137050410 -11733062 + MIR SINE MIR 35 192 -66 4405 84 0 151 chr11 137051481 137052291 -11731181 - LTR12 LTR ERV1 0 688 1 2103 110 7 13 chr11 137053127 137053428 -11730044 + AluSc SINE Alu 1 299 -10 200 357 116 0 chr11 137053533 137053662 -11729810 - MIR3 SINE MIR -35 173 30 2239 135 5 42 chr11 137053949 137054327 -11729145 - THE1B LTR MaLR 0 364 1 224 270 40 27 chr11 137054354 137054428 -11729044 + L2 LINE L2 3190 3264 -8 382 309 139 0 chr11 137055616 137055781 -11727691 - MIR SINE MIR -44 218 31 2057 123 7 3 chr11 137056139 137056439 -11727033 + AluSx SINE Alu 10 310 -2 351 329 7 7 chr11 137057090 137057233 -11726239 - MIR SINE MIR -3 259 117 1560 324 144 23 chr11 137057331 137058616 -11724856 + L2 LINE L2 1823 3248 -65 216 97 0 0 chr11 137058659 137058690 -11724782 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 217 279 23 101 chr11 137059925 137060054 -11723418 + L3b LINE CR1 1246 1364 -219 1215 243 62 65 chr11 137060926 137061445 -11722027 - MLT1G1 LTR MaLR -68 527 11 231 0 33 0 chr11 137064167 137064197 -11719275 + (TTTA)n Simple_repeat Simple_repeat 2 128 0 2149 99 0 3 chr11 137064197 137064480 -11718992 - AluSc SINE Alu -27 282 1 406 228 145 41 chr11 137064970 137065115 -11718357 - MER5B DNA MER1_type -16 162 3 1566 155 52 0 chr11 137066312 137066564 -11716908 - AluJb SINE Alu -47 265 1 514 176 0 84 chr11 137067283 137067414 -11716058 - Tigger1 DNA MER2_type 0 2418 2299 288 301 117 0 chr11 137067601 137067704 -11715768 + L2 LINE L2 3139 3253 -19 2256 167 12 48 chr11 137067806 137068286 -11715186 - MLT2B2 LTR ERVL 0 515 53 207 262 16 16 chr11 137068432 137068493 -11714979 - L2 LINE L2 -1 3271 3211 547 51 31 20 chr11 137069595 137069693 -11713779 + (TAGA)n Simple_repeat Simple_repeat 2 100 0 205 349 24 0 chr11 137070205 137070288 -11713184 + MIR SINE MIR 57 141 -67 24 53 0 0 chr11 137070390 137070428 -11713044 + AT_rich Low_complexity Low_complexity 1 38 0 331 333 53 6 chr11 137070956 137071127 -11712345 - MIR3 SINE MIR -21 187 9 194 347 32 82 chr11 137071382 137071601 -11711871 - L2 LINE L2 -86 3186 2979 410 305 92 46 chr11 137071813 137072252 -11711220 - L2 LINE L2 -214 3058 2607 1169 292 28 23 chr11 137072260 137072695 -11710777 + LTR16A LTR ERVL 1 437 -13 314 161 49 12 chr11 137072957 137073119 -11710353 + (TA)n Simple_repeat Simple_repeat 1 168 0 236 91 23 0 chr11 137073878 137073922 -11709550 + (TA)n Simple_repeat Simple_repeat 2 46 0 37 0 0 0 chr11 137073922 137073959 -11709513 + AT_rich Low_complexity Low_complexity 1 37 0 336 79 87 8 chr11 137073959 137074086 -11709386 + (TA)n Simple_repeat Simple_repeat 1 137 0 559 301 80 31 chr11 137074086 137074474 -11708998 - L2 LINE L2 -1092 2222 1816 1847 309 63 16 chr11 137075680 137076500 -11706972 + HAL1 LINE L1 11 903 -1604 2267 126 8 3 chr11 137076500 137076858 -11706614 - MER46B DNA MER2_type 0 236 2 1847 309 63 16 chr11 137076858 137077193 -11706279 + HAL1 LINE L1 903 1221 -1286 227 274 0 60 chr11 137077212 137077296 -11706176 - L2 LINE L2 -2354 960 882 218 363 89 13 chr11 137077299 137077536 -11705936 - L2 LINE L2 -1260 2054 1800 352 310 160 5 chr11 137077746 137077959 -11705513 - L2 LINE L2 -1230 2084 1839 4343 142 20 4 chr11 137078509 137079215 -11704257 + LTR62 LTR ERVK 1 717 -2 277 241 131 44 chr11 137079445 137079582 -11703890 - MIR SINE MIR -77 185 37 180 97 0 0 chr11 137080147 137080178 -11703294 + (T)n Simple_repeat Simple_repeat 1 31 0 219 69 0 0 chr11 137080328 137080357 -11703115 + (T)n Simple_repeat Simple_repeat 1 29 0 40871 34 22 1 chr11 137080359 137086387 -11697085 - L1PA3 LINE L1 0 6155 1 967 252 79 99 chr11 137087387 137088185 -11695287 + L1MC5 LINE L1 6645 7426 -535 389 295 27 70 chr11 137088698 137088763 -11694709 + L1MEd LINE L1 642 708 -5497 2476 67 3 0 chr11 137088763 137089060 -11694412 + AluSp SINE Alu 1 298 -15 389 295 27 70 chr11 137089060 137089252 -11694220 + L1MEd LINE L1 708 888 -5317 248 280 70 11 chr11 137090240 137090426 -11693046 + L1MEd LINE L1 2101 2297 -4099 1135 244 103 27 chr11 137090431 137091025 -11692447 + L1MEd LINE L1 2744 3382 -2833 753 291 79 39 chr11 137091498 137092463 -11691009 + L1MEd LINE L1 3491 4493 -1722 * 766 304 107 41 chr11 137092456 137092569 -11690903 + L1ME3A LINE L1 2198 2302 -3844 1722 150 4 18 chr11 137092569 137092875 -11690597 + AluJo SINE Alu 16 317 0 766 304 107 41 chr11 137092875 137095373 -11688099 + L1ME3A LINE L1 2302 4981 -1165 275 216 0 54 chr11 137095406 137095538 -11687934 - AluYb8 SINE Alu 0 329 204 23 33 0 0 chr11 137095621 137095651 -11687821 + AT_rich Low_complexity Low_complexity 1 30 0 29 60 0 0 chr11 137095844 137095894 -11687578 + AT_rich Low_complexity Low_complexity 1 50 0 2928 6 0 0 chr11 137096507 137096825 -11686647 - AluYb8 SINE Alu 0 318 1 355 272 46 18 chr11 137096864 137097159 -11686313 + L1ME3A LINE L1 5188 5487 -683 1655 166 28 21 chr11 137097189 137097473 -11685999 + AluJb SINE Alu 1 286 -26 343 279 99 42 chr11 137097633 137097839 -11685633 + L1ME3A LINE L1 5757 5973 -189 198 191 0 0 chr11 137098087 137098129 -11685343 + GA-rich Low_complexity Low_complexity 3 44 0 609 331 93 25 chr11 137098773 137099301 -11684171 + L1ME4a LINE L1 5308 5871 -250 1242 173 0 107 chr11 137099378 137099650 -11683822 - AluJo SINE Alu -69 243 1 21 0 0 0 chr11 137099666 137099687 -11683785 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr11 137099717 137099747 -11683725 + AT_rich Low_complexity Low_complexity 1 30 0 184 227 45 0 chr11 137100515 137100559 -11682913 - L3b LINE CR1 -266 1317 1272 1298 276 59 49 chr11 137100610 137101223 -11682249 - MER21B LTR ERV1 -149 714 96 184 222 44 0 chr11 137101776 137101821 -11681651 - MER5A DNA MER1_type -77 112 66 732 230 20 0 chr11 137101827 137101975 -11681497 - MER45A DNA AcHobo -9 169 19 253 328 0 0 chr11 137101992 137102053 -11681419 - MER5A DNA MER1_type -120 69 9 21 36 0 0 chr11 137102239 137102267 -11681205 + AT_rich Low_complexity Low_complexity 1 28 0 246 222 16 16 chr11 137103746 137103809 -11679663 + (CA)n Simple_repeat Simple_repeat 2 64 0 695 269 89 8 chr11 137105765 137106125 -11677347 + L1MD2 LINE L1 4185 4573 -1573 2192 224 99 56 chr11 137106139 137106265 -11677207 + L1MD2 LINE L1 5288 5407 -952 2072 104 0 24 chr11 137106265 137106581 -11676891 + AluSg SINE Alu 1 309 0 2192 224 99 56 chr11 137106581 137107260 -11676212 + L1MD2 LINE L1 5407 6129 -230 27 0 0 0 chr11 137107278 137107305 -11676167 + AT_rich Low_complexity Low_complexity 1 27 0 336 309 72 36 chr11 137107424 137107618 -11675854 - MIR SINE MIR -53 209 9 1549 106 5 9 chr11 137107765 137107983 -11675489 - AluSc SINE Alu -9 300 84 239 366 104 35 chr11 137109039 137109463 -11674009 + L2 LINE L2 2597 3051 -221 233 330 34 59 chr11 137109640 137109758 -11673714 + L2 LINE L2 3183 3297 -16 205 234 0 0 chr11 137110497 137110544 -11672928 + MIR3 SINE MIR 113 159 -49 330 320 183 0 chr11 137110545 137110698 -11672774 - MER5A DNA MER1_type 0 189 9 206 255 39 0 chr11 137111845 137111896 -11671576 + MIR SINE MIR 115 167 -95 216 0 0 0 chr11 137112746 137112770 -11670702 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2528 59 0 3 chr11 137112778 137113085 -11670387 + AluY SINE Alu 1 306 -5 245 323 65 39 chr11 137113238 137113393 -11670079 - L2 LINE L2 -240 3032 2874 1336 174 60 62 chr11 137113741 137114806 -11668666 + L1MD2 LINE L1 4978 6044 -315 1198 260 27 19 chr11 137114806 137115175 -11668297 + MLT1A2 LTR MaLR 1 372 -2 1336 174 60 62 chr11 137115175 137115331 -11668141 + L1MD2 LINE L1 6044 6199 -160 2206 107 0 17 chr11 137115331 137115630 -11667842 + AluSx SINE Alu 1 294 -18 1336 174 60 62 chr11 137115630 137115643 -11667829 + L1MD2 LINE L1 6199 6211 -148 402 115 0 0 chr11 137115643 137115704 -11667768 + (CA)n Simple_repeat Simple_repeat 2 62 0 1336 174 60 62 chr11 137115704 137115847 -11667625 + L1MD2 LINE L1 6211 6356 -3 2136 62 0 89 chr11 137116164 137116500 -11666972 - AluY SINE Alu -5 306 1 198 0 0 0 chr11 137116609 137116631 -11666841 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 372 257 33 43 chr11 137116674 137116884 -11666588 - L1MEc LINE L1 -3735 2480 2273 316 270 41 91 chr11 137116944 137117362 -11666110 - L1MEc LINE L1 -4094 2302 1906 265 231 11 33 chr11 137117506 137117597 -11665875 + L1MEd LINE L1 971 1059 -5060 2050 173 3 3 chr11 137118245 137118610 -11664862 - MER47A DNA MER2_type -1 365 1 317 315 67 18 chr11 137118977 137119142 -11664330 - HAL1 LINE L1 -833 1674 1502 207 198 12 37 chr11 137119174 137119255 -11664217 + CT-rich Low_complexity Low_complexity 2 80 0 299 248 43 106 chr11 137119274 137119556 -11663916 - HAL1 LINE L1 -1247 1260 997 769 162 0 29 chr11 137119591 137119727 -11663745 + MLT1F1 LTR MaLR 1 132 -435 280 277 50 50 chr11 137120263 137120382 -11663090 - L2 LINE L2 -37 3276 3158 30 59 0 0 chr11 137120895 137120946 -11662526 + AT_rich Low_complexity Low_complexity 1 51 0 21 57 0 0 chr11 137121110 137121145 -11662327 + AT_rich Low_complexity Low_complexity 1 35 0 2085 233 74 29 chr11 137121736 137122184 -11661288 - L1ME1 LINE L1 -108 6127 5701 2725 136 7 7 chr11 137122184 137122612 -11660860 - MSTA LTR MaLR 0 428 1 2085 233 74 29 chr11 137122612 137123085 -11660387 - L1ME1 LINE L1 -534 5701 5170 663 275 115 20 chr11 137123109 137123309 -11660163 - MER58A DNA MER1_type 0 224 6 3047 245 66 30 chr11 137123316 137123816 -11659656 - L1ME1 LINE L1 -3412 2803 2323 2586 144 26 2 chr11 137123816 137124240 -11659232 - Tigger2a DNA MER2_type 0 434 1 3047 245 66 30 chr11 137124240 137125225 -11658247 - L1ME1 LINE L1 -3892 2323 1297 827 309 59 7 chr11 137125223 137125511 -11657961 - L1ME1 LINE L1 -6057 339 37 * 489 318 41 25 chr11 137125537 137126093 -11657379 - L1M4 LINE L1 -3313 2833 2269 1957 145 51 9 chr11 137126174 137126506 -11656966 - MER7A DNA MER2_type -1 345 2 1073 294 74 16 chr11 137126507 137127058 -11656414 + L1ME LINE L1 4427 5009 -1137 2740 19 0 0 chr11 137127063 137127373 -11656099 - AluYb8 SINE Alu -8 310 1 307 290 36 79 chr11 137127594 137127897 -11655575 + L1ME LINE L1 5296 5585 -577 1781 183 22 35 chr11 137127907 137128273 -11655199 + MLT1A1 LTR MaLR 3 363 -2 511 184 65 33 chr11 137128287 137128444 -11655028 + L1ME LINE L1 5662 5818 -344 2638 104 3 6 chr11 137128513 137128878 -11654594 + THE1B LTR MaLR 1 364 0 9080 97 29 121 chr11 137128878 137130618 -11652854 + THE1B-int LTR MaLR 1 1580 0 1866 138 48 38 chr11 137130618 137130989 -11652483 + THE1C LTR MaLR 1 375 0 26 0 0 0 chr11 137131168 137131194 -11652278 + AT_rich Low_complexity Low_complexity 1 26 0 197 388 24 0 chr11 137131205 137131290 -11652182 - L3 LINE CR1 -246 1331 1245 188 388 51 0 chr11 137131327 137131425 -11652047 - L3 LINE CR1 -9 1568 1466 2632 90 6 3 chr11 137132294 137132648 -11650824 + THE1A LTR MaLR 1 355 0 243 0 0 0 chr11 137132847 137132874 -11650598 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 265 363 0 9 chr11 137132986 137133099 -11650373 + L1MDa LINE L1 21 132 -6408 2046 265 53 56 chr11 137133810 137135071 -11648401 + L1MDa LINE L1 898 2133 -4407 3397 177 57 3 chr11 137135093 137135758 -11647714 + L1 LINE L1 3462 4162 -1984 608 111 30 0 chr11 137135728 137135827 -11647645 + L1 LINE L1 4676 4777 -1369 * 2111 239 108 56 chr11 137135834 137136636 -11646836 + L1ME1 LINE L1 5300 6143 -23 2281 66 21 0 chr11 137139077 137139366 -11644106 - AluY SINE Alu -16 295 1 30 0 0 0 chr11 137141487 137141517 -11641955 + AT_rich Low_complexity Low_complexity 1 30 0 506 301 226 36 chr11 137141902 137142566 -11640906 - L3 LINE CR1 -205 1372 583 232 330 141 22 chr11 137142622 137142807 -11640665 - MIR SINE MIR -36 226 20 219 247 165 24 chr11 137142826 137142911 -11640561 - L3 LINE CR1 -1014 563 467 199 363 72 57 chr11 137142928 137143385 -11640087 - L3 LINE CR1 -1078 499 36 336 188 0 0 chr11 137143686 137143755 -11639717 + G-rich Low_complexity Low_complexity 1 69 0 * 556 62 31 47 chr11 137143752 137143880 -11639592 + (GAAA)n Simple_repeat Simple_repeat 4 129 0 409 319 35 0 chr11 137143996 137144140 -11639332 - L1 LINE L1 -2314 3832 3684 380 300 111 53 chr11 137144617 137145111 -11638361 - L1 LINE L1 -2977 3169 2647 363 261 34 0 chr11 137145216 137145304 -11638168 - L2 LINE L2 0 3313 3223 427 290 43 19 chr11 137146244 137146406 -11637066 + LTR16C LTR ERVL 326 491 0 297 0 0 0 chr11 137146758 137146791 -11636681 + (CA)n Simple_repeat Simple_repeat 2 34 0 239 145 32 65 chr11 137147401 137147463 -11636009 - L1MC4 LINE L1 -1338 6704 6645 202 302 58 12 chr11 137147979 137148065 -11635407 - MIR SINE MIR -168 94 5 299 225 14 0 chr11 137148869 137148940 -11634532 + MIR SINE MIR 63 134 -128 1949 124 3 10 chr11 137149325 137149639 -11633833 - L1PB1 LINE L1 0 6151 5840 271 150 67 0 chr11 137149740 137149800 -11633672 - L1PB1 LINE L1 -287 5864 5801 324 367 9 9 chr11 137149833 137149942 -11633530 - MIR SINE MIR -148 114 6 2143 127 39 30 chr11 137151644 137152005 -11631467 - THE1B LTR MaLR 0 364 1 11312 98 7 13 chr11 137152005 137153406 -11630066 - THE1B-int LTR MaLR 0 1580 188 1753 178 3 3 chr11 137153406 137153709 -11629763 - AluSx SINE Alu -9 303 1 11312 98 7 13 chr11 137153709 137153896 -11629576 - THE1B-int LTR MaLR -1392 188 1 2064 115 40 67 chr11 137153896 137153976 -11629496 - THE1B LTR MaLR 0 364 283 2412 58 0 19 chr11 137153976 137154285 -11629187 + AluY SINE Alu 8 310 -1 2064 115 40 67 chr11 137154285 137154578 -11628894 - THE1B LTR MaLR -81 283 1 357 198 0 0 chr11 137154603 137154689 -11628783 + GA-rich Low_complexity Low_complexity 2 87 0 36 40 0 0 chr11 137154951 137155001 -11628471 + AT_rich Low_complexity Low_complexity 1 50 0 224 410 29 0 chr11 137155555 137155694 -11627778 + L2 LINE L2 716 858 -2456 5755 232 71 50 chr11 137155971 137159448 -11624024 - L1PB4 LINE L1 -10 6146 2595 4035 214 39 30 chr11 137159616 137161831 -11621641 - L1 LINE L1 -2843 4005 1770 413 208 129 112 chr11 137211935 137212113 -11571359 + MER5A DNA MER1_type 9 189 0 3742 194 61 37 chr11 137213442 137214273 -11569199 + MER21B LTR ERV1 12 862 -1 3424 253 98 39 chr11 137214337 137215707 -11567765 + L2 LINE L2 1318 2767 -547 335 308 45 6 chr11 137215710 137215866 -11567606 + MIR SINE MIR 90 251 -11 224 259 37 19 chr11 137216769 137216877 -11566595 + CT-rich Low_complexity Low_complexity 3 112 0 1708 146 4 4 chr11 137216934 137217195 -11566277 - AluSx SINE Alu -18 294 34 198 232 196 45 chr11 137217451 137217563 -11565909 + MIR SINE MIR 63 191 -71 3260 139 19 8 chr11 137217716 137218242 -11565230 - Tigger4(Zombi) DNA MER2_type 0 2731 2200 390 229 0 12 chr11 137218220 137218303 -11565169 - Tigger4(Zombi) DNA MER2_type -2645 86 5 * 246 162 81 81 chr11 137218255 137218329 -11565143 + MER46A DNA MER2_type 95 168 -68 * 25 51 0 0 chr11 137218603 137218642 -11564830 + AT_rich Low_complexity Low_complexity 1 39 0 1559 183 72 11 chr11 137218709 137218988 -11564484 + AluJo SINE Alu 1 296 -16 976 198 12 6 chr11 137222787 137222949 -11560523 - FAM SINE Alu -9 166 4 369 279 104 31 chr11 137223023 137223221 -11560251 - MIR SINE MIR -41 221 16 1151 247 100 33 chr11 137223292 137223681 -11559791 - LTR40b LTR ERVL -47 415 1 231 343 57 19 chr11 137223719 137223824 -11559648 - MIR SINE MIR -152 110 2 2024 129 48 0 chr11 137224018 137224313 -11559159 - AluSc SINE Alu 0 309 1 432 355 70 10 chr11 137224722 137224922 -11558550 + LTR33 LTR ERVL 57 268 -253 207 0 0 0 chr11 137224922 137224945 -11558527 + (T)n Simple_repeat Simple_repeat 1 23 0 2010 141 0 16 chr11 137225062 137225375 -11558097 - AluJo SINE Alu -2 310 3 609 264 118 9 chr11 137225464 137225676 -11557796 + MIR SINE MIR 23 257 -5 243 354 142 37 chr11 137226246 137226647 -11556825 + L2 LINE L2 2453 2895 -419 946 243 240 32 chr11 137226689 137227097 -11556375 + LTR33 LTR ERVL 27 519 -2 400 341 0 15 chr11 137227513 137227648 -11555824 + HERVL LTR ERVL 520 652 -5002 1562 186 7 7 chr11 137227921 137228195 -11555277 + AluJb SINE Alu 6 279 -33 198 0 0 0 chr11 137228199 137228221 -11555251 + (GAAAA)n Simple_repeat Simple_repeat 2 23 0 680 219 85 92 chr11 137228264 137228547 -11554925 + LTR33 LTR ERVL 241 521 0 1015 169 82 53 chr11 137228616 137228859 -11554613 - MER21B LTR ERV1 -19 844 595 833 183 16 0 chr11 137228860 137228986 -11554486 - FLAM_A SINE Alu -14 128 1 2495 199 48 53 chr11 137228986 137229550 -11553922 - MER21B LTR ERV1 -258 605 45 414 230 14 0 chr11 137229551 137229625 -11553847 - MER21B LTR ERV1 -770 93 19 291 228 65 33 chr11 137229623 137229715 -11553757 - MER21B LTR ERV1 -757 106 12 * 798 247 102 0 chr11 137230001 137230236 -11553236 - MIR SINE MIR 0 262 4 2070 122 98 0 chr11 137230260 137230596 -11552876 + L1MB3 LINE L1 5815 6183 0 1355 318 53 47 chr11 137231072 137232075 -11551397 + L2 LINE L2 2148 3161 -152 213 39 0 0 chr11 137232075 137232101 -11551371 + (TTCC)n Simple_repeat Simple_repeat 2 27 0 1355 318 53 47 chr11 137232101 137232248 -11551224 + L2 LINE L2 3161 3306 -7 2201 195 32 4 chr11 137232377 137232839 -11550633 + L1MB7 LINE L1 5709 6183 -1 519 346 77 0 chr11 137233756 137233990 -11549482 + MIR SINE MIR 1 252 -10 632 260 110 9 chr11 137233993 137234312 -11549160 - L1MCa LINE L1 -2537 3889 3539 225 191 0 0 chr11 137234312 137234359 -11549113 + (TA)n Simple_repeat Simple_repeat 1 47 0 301 242 0 63 chr11 137234365 137234460 -11549012 - L1MC4 LINE L1 -1340 6702 6614 * 305 203 0 16 chr11 137234427 137234491 -11548981 - L1MCa LINE L1 -4358 2068 2006 1462 91 18 118 chr11 137234497 137234688 -11548784 + Tigger2 DNA MER2_type 3 212 -2506 6748 79 35 2 chr11 137234688 137235958 -11547514 + L1PA8 LINE L1 4866 6164 -8 1462 91 18 118 chr11 137235958 137236108 -11547364 + Tigger2 DNA MER2_type 212 2579 -139 806 210 115 0 chr11 137236109 137236309 -11547163 - AluJo SINE Alu -8 304 82 786 190 0 7 chr11 137236309 137236451 -11547021 + Tigger2 DNA MER2_type 2577 2717 -1 3876 262 47 38 chr11 137236465 137239459 -11544013 - L1ME LINE L1 -2831 3249 200 318 310 35 26 chr11 137241064 137241177 -11542295 + L2 LINE L2 3141 3254 -18 399 270 13 57 chr11 137241188 137241347 -11542125 + MIR SINE MIR 111 262 0 1777 120 0 0 chr11 137241375 137241617 -11541855 - AluSx SINE Alu -26 286 45 31 0 0 0 chr11 137241872 137241903 -11541569 + AT_rich Low_complexity Low_complexity 1 31 0 235 261 0 14 chr11 137244464 137244533 -11538939 + (TAAA)n Simple_repeat Simple_repeat 4 71 0 802 128 2 4 chr11 137244658 137244798 -11538674 + MSTA LTR MaLR 1 123 -303 6410 188 60 2 chr11 137244798 137245950 -11537522 + MSTA-int LTR MaLR 308 1526 -125 1445 179 88 28 chr11 137246050 137246368 -11537104 + MSTA LTR MaLR 92 428 0 236 186 71 43 chr11 137246448 137246518 -11536954 - MIR SINE MIR -116 92 21 234 244 105 12 chr11 137247662 137247748 -11535724 + L2 LINE L2 3179 3272 0 276 248 233 39 chr11 137248146 137248275 -11535197 - MIR SINE MIR -14 248 95 325 241 0 35 chr11 137248339 137248426 -11535046 - MER4-int LTR ERV1 -5439 1159 1076 593 250 151 16 chr11 137250042 137250234 -11533238 - MIR SINE MIR -31 231 14 611 189 155 0 chr11 137250385 137250533 -11532939 + MER58C DNA MER1_type 42 212 -3 199 121 0 0 chr11 137253120 137253153 -11530319 - L2 LINE L2 -2 3311 3279 311 277 121 28 chr11 137254210 137254351 -11529121 - MIR SINE MIR -61 201 48 259 191 235 52 chr11 137255382 137255497 -11527975 - L2 LINE L2 0 3272 3137 194 298 122 15 chr11 137255509 137255640 -11527832 + MIR SINE MIR 97 241 -21 189 310 35 62 chr11 137255730 137255843 -11527629 + L3b LINE CR1 1408 1517 -66 186 43 0 0 chr11 137256036 137256059 -11527413 + (TC)n Simple_repeat Simple_repeat 2 24 0 183 80 0 0 chr11 137256396 137256421 -11527051 + (CA)n Simple_repeat Simple_repeat 1 25 0 1507 330 48 3 chr11 137256439 137257006 -11526466 - MER115 DNA AcHobo -9 684 93 184 333 14 14 chr11 137257069 137257141 -11526331 + MER5B DNA MER1_type 107 178 0 3199 107 2 5 chr11 137257148 137257610 -11525862 + L1PB2 LINE L1 5712 6172 0 853 257 11 5 chr11 137258877 137259064 -11524408 + MER5A DNA MER1_type 1 188 -1 682 246 11 22 chr11 137259073 137259252 -11524220 + MER5B DNA MER1_type 1 177 -1 1734 148 0 69 chr11 137260403 137260720 -11522752 - AluJb SINE Alu -17 295 1 442 183 226 0 chr11 137261902 137261995 -11521477 - MER81 DNA DNA 0 114 1 460 307 16 31 chr11 137262192 137262384 -11521088 + L2 LINE L2 3124 3312 -1 1599 157 3 44 chr11 137263828 137264121 -11519351 - AluJo SINE Alu -12 300 20 182 36 0 36 chr11 137267275 137267303 -11516169 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 524 288 20 40 chr11 137268059 137268257 -11515215 + MLT1I LTR MaLR 133 326 -83 201 121 0 0 chr11 137268731 137268764 -11514708 + (CACCAT)n Simple_repeat Simple_repeat 5 37 0 2442 192 147 146 chr11 137269812 137270097 -11513375 - L1MC3 LINE L1 -166 7619 7336 2816 105 3 0 chr11 137270097 137270460 -11513012 + THE1B LTR MaLR 1 364 0 2442 192 147 146 chr11 137270460 137270568 -11512904 - L1MC3 LINE L1 -449 7336 7230 448 160 53 0 chr11 137270568 137270643 -11512829 - MLT1F1 LTR MaLR -443 124 46 2442 192 147 146 chr11 137270643 137271379 -11512093 - L1MC3 LINE L1 -555 7230 6414 298 380 93 0 chr11 137271790 137271919 -11511553 + L2 LINE L2 3121 3261 -11 339 289 79 33 chr11 137272795 137272947 -11510525 - MER5B DNA MER1_type -1 177 19 * 367 248 95 66 chr11 137272811 137272948 -11510524 + MER5A DNA MER1_type 31 171 -18 345 203 0 14 chr11 137273103 137273172 -11510300 + MER112 DNA MER1_type 10 77 -183 272 263 12 38 chr11 137273332 137273412 -11510060 + MER112 DNA MER1_type 178 255 -5 258 305 126 0 chr11 137274526 137274621 -11508851 - MIR SINE MIR -106 156 50 254 0 83 0 chr11 137275045 137275081 -11508391 + T-rich Low_complexity Low_complexity 2 40 0 190 348 191 0 chr11 137275634 137275749 -11507723 + MIR3 SINE MIR 5 141 -67 542 264 67 17 chr11 137275776 137275954 -11507518 - MIR SINE MIR 0 262 76 927 227 22 0 chr11 137276183 137276368 -11507104 - MER5A DNA MER1_type 0 189 1 233 333 15 53 chr11 137276439 137276482 -11506990 + MIR SINE MIR 114 157 -105 2129 157 24 9 chr11 137276482 137276820 -11506652 + MER61A LTR ERV1 1 343 0 233 333 15 53 chr11 137276820 137276908 -11506564 + MIR SINE MIR 157 240 -22 932 283 52 32 chr11 137277075 137277482 -11505990 - LTR33 LTR ERVL -3 518 104 377 277 101 0 chr11 137277536 137277655 -11505817 - MIR SINE MIR -117 145 15 21 36 0 0 chr11 137277702 137277730 -11505742 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr11 137277996 137278018 -11505454 + AT_rich Low_complexity Low_complexity 1 22 0 474 254 33 77 chr11 137279047 137279228 -11504244 + MER69A DNA AcHobo 1 173 -4 1483 214 69 6 chr11 137279321 137279653 -11503819 - MLT1A1 LTR MaLR -3 362 10 534 319 75 5 chr11 137279927 137280115 -11503357 + MIR SINE MIR 48 248 -14 276 316 60 8 chr11 137280433 137280550 -11502922 - L2 LINE L2 -9 3304 3182 393 286 32 26 chr11 137280619 137280754 -11502718 + MER103 DNA DNA 12 150 -16 2332 99 0 0 chr11 137280754 137281058 -11502414 - AluSc SINE Alu -5 304 1 393 286 32 26 chr11 137281058 137281076 -11502396 + MER103 DNA DNA 150 166 0 200 331 65 53 chr11 137281560 137281729 -11501743 - L2 LINE L2 -640 2674 2504 3007 183 78 3 chr11 137282513 137282999 -11500473 - MER6 DNA MER2_type 0 865 262 207 0 0 0 chr11 137282999 137283022 -11500450 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 3007 183 78 3 chr11 137283022 137283306 -11500166 - MER6 DNA MER2_type -603 262 1 2111 128 0 28 chr11 137283508 137283828 -11499644 + AluSx SINE Alu 1 311 -1 194 0 39 0 chr11 137288459 137288485 -11494987 + (TAA)n Simple_repeat Simple_repeat 2 28 0 453 310 97 31 chr11 137289329 137289555 -11493917 - MIR SINE MIR -2 260 20 2262 113 0 3 chr11 137289566 137289877 -11493595 - AluSg SINE Alu 0 310 1 263 286 83 0 chr11 137290473 137290557 -11492915 + L1MC4 LINE L1 6613 6703 -1339 356 285 139 28 chr11 137291762 137291906 -11491566 - MIR SINE MIR -43 219 60 288 0 0 0 chr11 137292860 137292892 -11490580 + (TTTTTG)n Simple_repeat Simple_repeat 4 35 0 559 289 32 6 chr11 137292972 137293128 -11490344 - MIR3 SINE MIR -15 193 34 283 266 115 0 chr11 137294708 137294821 -11488651 - L2 LINE L2 -1 3271 3146 907 149 0 15 chr11 137294933 137295067 -11488405 - FLAM_C SINE Alu 0 133 2 3555 117 0 46 chr11 137296112 137296657 -11486815 - MER1A DNA MER1_type -9 520 1 186 268 155 77 chr11 137297416 137297584 -11485888 - MIR3 SINE MIR -25 183 3 484 240 138 92 chr11 137298990 137299207 -11484265 - MIR SINE MIR -1 261 35 276 30 0 0 chr11 137299728 137299761 -11483711 - L1MA9 LINE L1 -4 6308 6276 423 38 0 0 chr11 137299939 137299992 -11483480 + (TGAA)n Simple_repeat Simple_repeat 3 55 0 1745 165 59 17 chr11 137300984 137301122 -11482350 - L1MA9 LINE L1 -4 6308 6177 192 40 0 0 chr11 137301122 137301147 -11482325 + (TG)n Simple_repeat Simple_repeat 1 25 0 1745 165 59 17 chr11 137301147 137301366 -11482106 - L1MA9 LINE L1 -135 6177 5936 1573 206 72 11 chr11 137301372 137301807 -11481665 + MLT2B1 LTR ERVL 9 518 -2 750 223 42 6 chr11 137301990 137302156 -11481316 - MIR SINE MIR -69 193 22 441 0 0 0 chr11 137302530 137302579 -11480893 + (CA)n Simple_repeat Simple_repeat 2 50 0 348 328 181 36 chr11 137303530 137303917 -11479555 - L3 LINE CR1 -165 1412 970 3824 181 15 2 chr11 137304127 137304929 -11478543 - L1MA9 LINE L1 -14 6298 5391 183 80 0 0 chr11 137306030 137306055 -11477417 + (TG)n Simple_repeat Simple_repeat 1 25 0 258 32 0 0 chr11 137306241 137306272 -11477200 + (CA)n Simple_repeat Simple_repeat 1 31 0 227 268 0 14 chr11 137306429 137306500 -11476972 + GA-rich Low_complexity Low_complexity 3 72 0 249 83 0 0 chr11 137307623 137307659 -11475813 + (TG)n Simple_repeat Simple_repeat 1 36 0 376 339 141 38 chr11 137307703 137308594 -11474878 + L2 LINE L2 2078 3066 -206 11141 195 37 15 chr11 137308654 137309334 -11474138 - L1PA16 LINE L1 0 6869 6205 1598 160 7 75 chr11 137309334 137309640 -11473832 - AluJb SINE Alu -27 285 1 11141 195 37 15 chr11 137309640 137312557 -11470915 - L1PA16 LINE L1 -664 6205 3185 2822 83 11 8 chr11 137312557 137312912 -11470560 - L1PB1 LINE L1 -1 6150 5792 213 39 0 0 chr11 137312912 137312938 -11470534 + (TG)n Simple_repeat Simple_repeat 2 27 0 2822 83 11 8 chr11 137312938 137312956 -11470516 - L1PB1 LINE L1 -359 5792 5776 269 250 0 62 chr11 137312968 137313064 -11470408 - L1MC4 LINE L1 -1339 6703 6614 * 307 221 0 21 chr11 137312978 137313073 -11470399 + L1MC4 LINE L1 6614 6706 -1336 * 9311 181 24 15 chr11 137313061 137315646 -11467826 - L1P5 LINE L1 -360 5791 3185 17783 151 43 16 chr11 137315649 137318752 -11464720 - L1PA16 LINE L1 -3663 3186 1 369 0 0 0 chr11 137319434 137319475 -11463997 + (TG)n Simple_repeat Simple_repeat 2 42 0 180 0 0 0 chr11 137319498 137319518 -11463954 + (TGAA)n Simple_repeat Simple_repeat 2 21 0 328 293 152 18 chr11 137320085 137320249 -11463223 - MER5A DNA MER1_type 0 189 4 1869 92 4 4 chr11 137320832 137321092 -11462380 - L1P3 LINE L1 -5277 1184 925 5614 75 1 7 chr11 137321092 137321825 -11461647 + L1PA7 LINE L1 5426 6154 0 192 77 0 0 chr11 137323090 137323116 -11460356 + (CA)n Simple_repeat Simple_repeat 1 26 0 195 42 0 0 chr11 137323493 137323517 -11459955 + (CACCC)n Simple_repeat Simple_repeat 4 27 0 341 295 60 13 chr11 137323829 137323978 -11459494 + MIR SINE MIR 6 161 -101 426 286 124 6 chr11 137326499 137326660 -11456812 + MIR3 SINE MIR 20 199 -9 1708 166 10 10 chr11 137327046 137327342 -11456130 - AluSx SINE Alu -16 296 1 300 261 23 11 chr11 137327512 137327600 -11455872 + MIR SINE MIR 48 136 -126 265 404 59 12 chr11 137330958 137331280 -11452192 + L2 LINE L2 2840 3176 -96 270 301 40 57 chr11 137331535 137331697 -11451775 - MIR SINE MIR -67 141 7 227 242 16 0 chr11 137332001 137332063 -11451409 + MIR3 SINE MIR 125 187 -21 433 196 10 10 chr11 137332984 137333081 -11450391 + MIR SINE MIR 166 262 0 352 291 0 39 chr11 137333084 137333211 -11450261 - L2 LINE L2 0 3313 3192 1578 162 107 6 chr11 137333566 137333871 -11449601 + MLT2A2 LTR ERVL 1 333 -149 834 86 0 0 chr11 137333874 137333979 -11449493 + AluSg/x SINE Alu 199 303 -6 974 166 13 8 chr11 137334014 137334222 -11449250 + MLT2A2 LTR ERVL 302 445 -8 182 250 208 25 chr11 137334519 137334639 -11448833 - L2 LINE L2 0 3313 3172 1994 129 0 10 chr11 137334899 137335194 -11448278 - AluSc SINE Alu -17 292 1 201 338 15 15 chr11 137335317 137335385 -11448087 + L2 LINE L2 3195 3262 -10 212 316 53 0 chr11 137335426 137335521 -11447951 - MIR SINE MIR -3 259 160 285 331 77 0 chr11 137335756 137335886 -11447586 + L2 LINE L2 3161 3300 -13 221 310 28 0 chr11 137336305 137336376 -11447096 - L2 LINE L2 0 3272 3200 679 261 162 40 chr11 137337902 137338327 -11445145 - L1ME4a LINE L1 -2 6119 5643 2336 101 3 0 chr11 137338587 137338884 -11444588 + AluSg SINE Alu 1 298 -12 303 270 54 40 chr11 137340511 137340659 -11442813 + MER5A DNA MER1_type 36 185 -4 347 351 0 0 chr11 137340771 137340882 -11442590 + MIR SINE MIR 36 146 -116 347 352 6 44 chr11 137341137 137341319 -11442153 - MIR SINE MIR 0 262 88 273 278 100 0 chr11 137341320 137341410 -11442062 - MIR SINE MIR -136 126 28 328 113 4 2 chr11 137341637 137341876 -11441596 + AluSg1 SINE Alu 1 297 -3 301 275 92 15 chr11 137342089 137342220 -11441252 - MIR3 SINE MIR -48 160 20 862 127 92 0 chr11 137343458 137343600 -11439872 + L1PB4 LINE L1 6002 6156 0 729 216 15 0 chr11 137343740 137343874 -11439598 - Tigger2 DNA MER2_type -4 2714 2579 598 71 0 0 chr11 137343966 137344051 -11439421 - Tigger2 DNA MER2_type -148 2570 2486 867 249 192 32 chr11 137345335 137345768 -11437704 - L2 LINE L2 0 3313 2812 192 225 0 0 chr11 137346255 137346295 -11437177 - L2 LINE L2 -48 3224 3185 1100 164 38 19 chr11 137346561 137346774 -11436698 + MER20 DNA MER1_type 1 217 -2 220 244 24 114 chr11 137347084 137347207 -11436265 - MIR SINE MIR -65 197 86 435 200 15 15 chr11 137347564 137347694 -11435778 + CT-rich Low_complexity Low_complexity 2 131 0 1027 239 133 28 chr11 137347718 137348108 -11435364 + MLT1J2 LTR MaLR 20 450 0 518 230 178 7 chr11 137349674 137349826 -11433646 - MER5A DNA MER1_type 0 189 12 243 161 18 18 chr11 137349844 137349900 -11433572 + MLT1J2 LTR MaLR 372 427 -23 757 179 0 15 chr11 137350256 137350390 -11433082 + FLAM_C SINE Alu 2 133 0 261 301 30 8 chr11 137350865 137350998 -11432474 + L2 LINE L2 2154 2289 -1025 188 159 0 23 chr11 137351047 137351091 -11432381 + GA-rich Low_complexity Low_complexity 1 43 0 411 21 0 0 chr11 137351397 137351445 -11432027 + (TTA)n Simple_repeat Simple_repeat 1 48 0 525 320 18 60 chr11 137352327 137352552 -11430920 - L2 LINE L2 -410 2904 2700 2163 103 3 3 chr11 137352552 137352843 -11430629 + AluSg SINE Alu 2 292 -18 525 320 18 60 chr11 137352843 137352998 -11430474 - L2 LINE L2 -614 2700 2540 429 239 6 63 chr11 137353177 137353336 -11430136 + MIR SINE MIR 74 223 -39 290 318 179 35 chr11 137354148 137354349 -11429123 + MIR SINE MIR 23 252 -10 1997 138 7 0 chr11 137355135 137355431 -11428041 + AluSx SINE Alu 1 298 -14 201 39 0 0 chr11 137355433 137355459 -11428013 + (TG)n Simple_repeat Simple_repeat 1 26 0 606 212 9 0 chr11 137357283 137357396 -11426076 + MER81 DNA DNA 1 114 0 2271 92 3 7 chr11 137357703 137358006 -11425466 - AluSp SINE Alu -11 302 1 2190 114 0 3 chr11 137358202 137358492 -11424980 + AluSx SINE Alu 3 291 -21 1129 209 84 202 chr11 137358957 137359047 -11424425 - L1MC4 LINE L1 0 8042 7943 282 29 0 0 chr11 137359047 137359082 -11424390 + (TG)n Simple_repeat Simple_repeat 2 36 0 1129 209 84 202 chr11 137359082 137360432 -11423040 - L1MC4 LINE L1 -99 7943 6772 637 289 168 32 chr11 137360457 137360862 -11422610 + L2 LINE L2 2251 2710 -604 1831 199 84 25 chr11 137361065 137361506 -11421966 + MLT1F LTR MaLR 30 496 -46 3178 276 88 33 chr11 137361516 137362890 -11420582 - L1MC4a LINE L1 -1105 6703 5254 2435 85 0 0 chr11 137362987 137363292 -11420180 - AluSq SINE Alu -8 305 1 325 284 21 14 chr11 137363467 137363608 -11419864 - L1MC4a LINE L1 -1120 5026 4885 204 97 0 0 chr11 137363976 137364007 -11419465 + (GA)n Simple_repeat Simple_repeat 1 31 0 326 293 73 0 chr11 137364068 137364218 -11419254 - MIR SINE MIR -49 213 53 219 224 0 41 chr11 137365880 137365929 -11417543 - L2 LINE L2 -10 3262 3216 299 269 160 46 chr11 137365944 137366119 -11417353 - MIR SINE MIR -11 251 57 425 234 22 44 chr11 137367688 137367858 -11415614 + MIR SINE MIR 52 212 -50 655 250 107 13 chr11 137369804 137370028 -11413444 + MIR SINE MIR 13 257 -5 25 0 0 0 chr11 137370034 137370059 -11413413 + AT_rich Low_complexity Low_complexity 1 25 0 875 252 41 0 chr11 137370702 137370939 -11412533 + MLT1G LTR MaLR 9 270 -285 793 323 20 34 chr11 137371002 137371352 -11412120 - L1MC/D LINE L1 -2009 5799 5455 189 179 0 26 chr11 137371943 137371982 -11411490 + MER5A DNA MER1_type 130 167 -22 1051 155 0 35 chr11 137371988 137372162 -11411310 - AluJb SINE Alu -31 281 114 721 232 60 0 chr11 137372165 137372333 -11411139 - MER5A DNA MER1_type -11 178 1 219 214 0 0 chr11 137372346 137372402 -11411070 + MER5A DNA MER1_type 28 83 -106 687 229 6 22 chr11 137372485 137372664 -11410808 - MER5B DNA MER1_type -2 176 1 238 325 151 16 chr11 137372782 137372908 -11410564 - L2 LINE L2 -8 3264 3122 261 247 31 52 chr11 137373064 137373161 -11410311 - L2 LINE L2 0 3272 3178 500 224 190 24 chr11 137373398 137373603 -11409869 + MLT1K LTR MaLR 344 582 -6 242 383 75 42 chr11 137374395 137374755 -11408717 + L2 LINE L2 2896 3267 -5 1530 272 84 23 chr11 137376118 137376687 -11406785 - L1ME3A LINE L1 -31 6139 5536 207 286 176 25 chr11 137376739 137376858 -11406614 - MIR SINE MIR -118 144 8 259 260 252 0 chr11 137377038 137377161 -11406311 + L2 LINE L2 2008 2161 -1153 529 299 19 37 chr11 137377181 137377548 -11405924 + MLT1I LTR MaLR 11 401 -8 1038 287 8 24 chr11 137377559 137377928 -11405544 + L2 LINE L2 2189 2551 -763 405 284 223 5 chr11 137378979 137379176 -11404296 - MIR SINE MIR 0 262 23 360 0 0 0 chr11 137379329 137379369 -11404103 + (CA)n Simple_repeat Simple_repeat 2 41 0 432 300 44 12 chr11 137379997 137380157 -11403315 - MIR3 SINE MIR -12 196 32 349 296 45 74 chr11 137380132 137380375 -11403097 + MIR SINE MIR 21 256 -6 * 21 36 0 0 chr11 137381137 137381165 -11402307 + AT_rich Low_complexity Low_complexity 1 28 0 726 330 39 11 chr11 137381436 137381800 -11401672 - L1ME3A LINE L1 -269 5901 5528 258 309 168 5 chr11 137382162 137382353 -11401119 + MIR SINE MIR 1 222 -40 1286 234 35 48 chr11 137382404 137382798 -11400674 - MLT1B LTR MaLR -1 389 1 973 192 0 67 chr11 137383067 137383291 -11400181 + MER3 DNA MER1_type 1 209 0 1130 108 54 20 chr11 137384575 137384779 -11398693 - L1MA8 LINE L1 0 6291 6081 197 336 26 9 chr11 137385582 137385695 -11397777 + MIR SINE MIR 87 201 -61 1471 122 0 0 chr11 137385718 137385914 -11397558 + AluSq SINE Alu 1 196 -117 333 118 0 0 chr11 137385915 137385966 -11397506 + AluSq SINE Alu 251 301 0 181 388 23 8 chr11 137387964 137388093 -11395379 + MIR SINE MIR 18 148 -60 245 365 38 31 chr11 137388609 137388768 -11394704 - MIR3 SINE MIR -24 184 25 181 318 16 0 chr11 137388777 137388840 -11394632 - MIR3 SINE MIR -132 76 13 633 307 19 84 chr11 137388953 137389419 -11394053 - MLT1J LTR MaLR -75 436 1 266 254 17 0 chr11 137390304 137390363 -11393109 + LTR33 LTR ERVL 30 89 -432 351 302 84 33 chr11 137390389 137390720 -11392752 + LTR33 LTR ERVL 156 519 -2 519 147 26 0 chr11 137391250 137391366 -11392106 + CT-rich Low_complexity Low_complexity 1 119 0 313 320 33 33 chr11 137392637 137392759 -11390713 + L2 LINE L2 3146 3267 -5 182 324 120 9 chr11 137392818 137392926 -11390546 + L2 LINE L2 3143 3262 -10 1818 167 48 17 chr11 137394713 137395066 -11388406 + MLT1A1 LTR MaLR 1 364 -1 488 235 33 66 chr11 137395302 137395457 -11388015 + L1MC5 LINE L1 7722 7872 -89 717 226 73 6 chr11 137395457 137395634 -11387838 - MER5A DNA MER1_type 0 189 1 488 235 33 66 chr11 137395634 137395661 -11387811 + L1MC5 LINE L1 7872 7898 -63 1725 201 40 24 chr11 137396797 137397170 -11386302 + MLT1B LTR MaLR 4 382 -8 24 0 0 0 chr11 137397499 137397523 -11385949 + AT_rich Low_complexity Low_complexity 1 24 0 223 304 78 0 chr11 137398421 137398523 -11384949 - L2 LINE L2 -3 3310 3201 226 200 0 0 chr11 137399658 137399698 -11383774 - LTR11 LTR ERV -605 79 40 1128 283 139 11 chr11 137401084 137401617 -11381855 + L2 LINE L2 2067 2667 -647 2154 114 0 7 chr11 137401647 137401937 -11381535 + AluSx SINE Alu 1 288 -24 444 296 102 24 chr11 137401991 137402197 -11381275 - MIR SINE MIR -21 241 20 1095 320 9 102 chr11 137402832 137403166 -11380306 - AluSq SINE Alu 0 303 1 2154 147 6 0 chr11 137403283 137403596 -11379876 - MER1B DNA MER1_type 0 339 25 1532 152 0 16 chr11 137403597 137403847 -11379625 + AluSx SINE Alu 45 290 -22 288 228 0 0 chr11 137403870 137403927 -11379545 - L2 LINE L2 -548 2766 2710 1134 115 6 24 chr11 137403955 137404120 -11379352 - AluSc SINE Alu -14 295 134 198 0 0 0 chr11 137406235 137406257 -11377215 + (CA)n Simple_repeat Simple_repeat 2 23 0 369 0 0 0 chr11 137406449 137406490 -11376982 + (CA)n Simple_repeat Simple_repeat 1 41 0 210 71 0 0 chr11 137411189 137411217 -11372255 + (CA)n Simple_repeat Simple_repeat 2 29 0 325 273 74 0 chr11 137411703 137411824 -11371648 - L2 LINE L2 -7 3265 3136 263 239 45 34 chr11 137413082 137413170 -11370302 + L3 LINE CR1 1482 1570 -7 207 0 0 0 chr11 137413911 137413934 -11369538 + (TAA)n Simple_repeat Simple_repeat 2 24 0 193 308 0 0 chr11 137414002 137414054 -11369418 + L2 LINE L2 3204 3255 -17 352 296 57 23 chr11 137416602 137416778 -11366694 - MIR SINE MIR -29 233 52 443 263 138 0 chr11 137418315 137418475 -11364997 + MER5A DNA MER1_type 3 184 -5 269 323 23 23 chr11 137420398 137420528 -11362944 - MIR SINE MIR -113 149 20 989 194 15 10 chr11 137421357 137421553 -11361919 + MER105 DNA DNA 6 202 -2 2172 162 106 17 chr11 137421563 137422027 -11361445 - MLT1D LTR MaLR 0 505 1 222 341 76 22 chr11 137425097 137425320 -11358152 + L2 LINE L2 2826 3060 -212 416 298 37 19 chr11 137425662 137425823 -11357649 - MIR SINE MIR -64 198 35 21 36 0 0 chr11 137426121 137426149 -11357323 + AT_rich Low_complexity Low_complexity 1 28 0 325 179 0 0 chr11 137427733 137427789 -11355683 - L2 LINE L2 -1 3312 3257 222 175 0 0 chr11 137427817 137427857 -11355615 + L2 LINE L2 3270 3309 -4 236 350 86 0 chr11 137428581 137428744 -11354728 + MIR SINE MIR 86 262 0 279 355 38 22 chr11 137429217 137429400 -11354072 + L3 LINE CR1 911 1096 -481 181 274 81 0 chr11 137429829 137429891 -11353581 - L2 LINE L2 -84 3188 3122 287 206 45 110 chr11 137431458 137431613 -11351859 - MER5A DNA MER1_type -1 188 44 296 350 42 0 chr11 137431717 137431837 -11351635 + L2 LINE L2 3143 3267 -5 * 317 369 10 15 chr11 137431831 137432029 -11351443 + L3 LINE CR1 1349 1545 -32 401 177 76 0 chr11 137432066 137432145 -11351327 + MER7A DNA MER2_type 1 83 -263 984 123 7 0 chr11 137432147 137432285 -11351187 + AluJb SINE Alu 1 139 -173 965 191 0 71 chr11 137432293 137432323 -11351149 + AluJo SINE Alu 85 116 -196 186 71 0 0 chr11 137432323 137432351 -11351121 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 965 191 0 71 chr11 137432351 137432530 -11350942 + AluJo SINE Alu 116 279 -33 473 106 64 75 chr11 137432537 137432631 -11350841 + MER7A DNA MER2_type 156 248 -88 384 138 0 31 chr11 137432643 137432708 -11350764 + MER7A DNA MER2_type 177 239 -98 1050 159 34 11 chr11 137432717 137432893 -11350579 + MER7A DNA MER2_type 157 336 0 363 252 24 41 chr11 137433259 137433382 -11350090 + L2 LINE L2 3193 3313 0 459 316 87 18 chr11 137433388 137433606 -11349866 - MIR SINE MIR -6 256 24 332 281 10 10 chr11 137433623 137433719 -11349753 - MIR SINE MIR -68 140 45 189 0 0 0 chr11 137434077 137434098 -11349374 + (T)n Simple_repeat Simple_repeat 1 21 0 343 210 260 0 chr11 137434477 137434577 -11348895 - LTR67 LTR ERVL -1 556 431 234 239 60 30 chr11 137434733 137434800 -11348672 - LTR67 LTR ERVL -376 181 113 315 0 0 0 chr11 137434993 137435028 -11348444 + (TC)n Simple_repeat Simple_repeat 2 36 0 524 269 29 6 chr11 137438229 137438400 -11345072 - MIR3 SINE MIR -23 185 11 192 200 0 0 chr11 137438811 137438851 -11344621 + CT-rich Low_complexity Low_complexity 2 41 0 1111 156 71 38 chr11 137439260 137439471 -11344001 - MER20 DNA MER1_type 0 219 2 412 268 127 0 chr11 137440320 137440462 -11343010 - MIR SINE MIR -14 248 89 426 53 0 0 chr11 137443837 137443894 -11339578 + (TG)n Simple_repeat Simple_repeat 2 58 0 15578 132 21 3 chr11 137444072 137446447 -11337025 - Tigger1 DNA MER2_type 0 2418 1 210 37 0 0 chr11 137447104 137447131 -11336341 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 262 336 36 36 chr11 137447517 137447740 -11335732 - L2 LINE L2 -963 2351 2129 198 0 0 0 chr11 137447744 137447766 -11335706 + (CAA)n Simple_repeat Simple_repeat 2 23 0 1380 222 85 91 chr11 137447780 137447813 -11335659 - MLT2B1 LTR ERVL -6 464 432 195 42 0 0 chr11 137447813 137447837 -11335635 + (TG)n Simple_repeat Simple_repeat 1 24 0 1380 222 85 91 chr11 137447837 137447875 -11335597 - MLT2B1 LTR ERVL -38 432 395 259 77 19 19 chr11 137447875 137447927 -11335545 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 1380 222 85 91 chr11 137447927 137448363 -11335109 - MLT2B1 LTR ERVL -75 395 1 187 229 257 0 chr11 137449049 137449119 -11334353 - MIR SINE MIR -10 252 165 221 290 226 0 chr11 137449297 137449390 -11334082 - MIR SINE MIR -65 143 30 22 0 0 0 chr11 137449738 137449760 -11333712 + AT_rich Low_complexity Low_complexity 1 22 0 198 167 0 0 chr11 137451013 137451049 -11332423 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 242 339 195 0 chr11 137452352 137452547 -11330925 + L3 LINE CR1 1331 1563 -14 225 318 0 0 chr11 137453133 137453196 -11330276 + (CA)n Simple_repeat Simple_repeat 1 63 0 5965 51 4 1 chr11 137453703 137454428 -11329044 - L1PA7 LINE L1 -1 6153 5427 2584 76 40 0 chr11 137454428 137454798 -11328674 + L1P LINE L1 4957 5341 -805 2041 126 10 0 chr11 137454798 137455092 -11328380 - AluSx SINE Alu -15 297 1 190 243 81 40 chr11 137455303 137455377 -11328095 - L3b LINE CR1 -6 1577 1501 227 319 44 62 chr11 137455741 137455854 -11327618 - L2 LINE L2 -21 3292 3182 513 197 16 33 chr11 137456040 137456162 -11327310 + MLT1D LTR MaLR 3 122 -383 1986 109 21 21 chr11 137456785 137457104 -11326368 - AluSc SINE Alu 0 309 1 265 317 83 14 chr11 137457759 137457904 -11325568 - L3 LINE CR1 -4 1573 1419 279 279 88 34 chr11 137460164 137460311 -11323161 + MIR SINE MIR 12 166 -96 188 293 8 81 chr11 137460358 137460481 -11322991 + MIR SINE MIR 149 262 0 1224 239 71 55 chr11 137462806 137463288 -11320184 - MER39 LTR ERV1 0 683 1 198 0 0 0 chr11 137464838 137464860 -11318612 + (ATG)n Simple_repeat Simple_repeat 3 24 0 411 296 76 12 chr11 137464874 137465046 -11318426 - MIR SINE MIR -16 246 64 272 333 29 10 chr11 137465116 137465218 -11318254 - MIR SINE MIR -84 124 21 418 231 39 31 chr11 137465679 137465809 -11317663 - MER5A DNA MER1_type -22 167 37 201 147 0 0 chr11 137466370 137466404 -11317068 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 475 277 51 0 chr11 137468690 137468827 -11314645 + MIR SINE MIR 45 188 -74 296 279 79 21 chr11 137469046 137469186 -11314286 - MLT1L LTR MaLR -2 613 466 2414 79 3 0 chr11 137469272 137469575 -11313897 - AluY SINE Alu -7 304 1 1397 228 29 3 chr11 137470262 137470609 -11312863 - L1MB7 LINE L1 -9 6175 5820 1059 87 10 10 chr11 137470788 137470998 -11312474 + (TCTA)n Simple_repeat Simple_repeat 1 210 0 300 319 114 50 chr11 137471063 137471540 -11311932 + L2 LINE L2 1220 1772 -1542 291 54 0 0 chr11 137471540 137471577 -11311895 + (CAA)n Simple_repeat Simple_repeat 1 37 0 300 319 114 50 chr11 137471577 137471913 -11311559 + L2 LINE L2 1772 2085 -1229 1287 35 17 0 chr11 137471917 137472090 -11311382 + (TTC)n Simple_repeat Simple_repeat 1 176 0 246 156 0 0 chr11 137472705 137472750 -11310722 + (CA)n Simple_repeat Simple_repeat 2 46 0 321 282 63 24 chr11 137473224 137473460 -11310012 - L2 LINE L2 0 3313 2578 407 348 77 16 chr11 137473611 137473858 -11309614 - L2 LINE L2 -814 2500 2239 2273 113 3 3 chr11 137473908 137474218 -11309254 + AluSx SINE Alu 1 310 -2 228 182 0 0 chr11 137474228 137474272 -11309200 + A-rich Low_complexity Low_complexity 1 44 0 2950 151 14 6 chr11 137474463 137474967 -11308505 - L1M4 LINE L1 -362 5822 5315 * 5915 144 30 25 chr11 137474959 137475953 -11307519 - L1MC1 LINE L1 0 6333 5333 1941 114 43 23 chr11 137475953 137476252 -11307220 - AluY SINE Alu -6 305 1 5915 144 30 25 chr11 137476252 137476365 -11307107 - L1MC1 LINE L1 -1000 5333 5222 3850 198 58 49 chr11 137476365 137477547 -11305925 - L1M4 LINE L1 -786 5360 4168 201 178 0 0 chr11 137479651 137479696 -11303776 + GA-rich Low_complexity Low_complexity 4 48 0 350 249 114 99 chr11 137479723 137480057 -11303415 - L2 LINE L2 0 3272 2934 219 259 24 0 chr11 137482000 137482085 -11301387 + CT-rich Low_complexity Low_complexity 4 90 0 188 292 0 0 chr11 137483686 137483734 -11299738 - L2 LINE L2 -2 3311 3264 305 172 16 0 chr11 137483737 137483801 -11299671 + (TG)n Simple_repeat Simple_repeat 1 65 0 283 268 202 24 chr11 137484661 137484829 -11298643 - MIR SINE MIR -31 231 34 879 83 0 0 chr11 137485817 137485938 -11297534 + (GAA)n Simple_repeat Simple_repeat 2 122 0 363 328 113 44 chr11 137485942 137486278 -11297194 - L2 LINE L2 -1229 2085 1774 291 54 0 0 chr11 137486278 137486315 -11297157 + (TTG)n Simple_repeat Simple_repeat 1 37 0 363 328 113 44 chr11 137486315 137486774 -11296698 - L2 LINE L2 -1540 1774 1235 1059 116 21 23 chr11 137486850 137487569 -11295903 + (TAGA)n Simple_repeat Simple_repeat 1 717 0 2627 164 78 22 chr11 137487569 137488092 -11295380 - MLT2B3 LTR ERVL -19 534 2 222 323 44 71 chr11 137488216 137488442 -11295030 - L2 LINE L2 -2247 1067 848 300 233 40 139 chr11 137488828 137489030 -11294442 + MIR SINE MIR 69 250 -12 317 194 42 35 chr11 137489930 137490074 -11293398 + (TATAA)n Simple_repeat Simple_repeat 4 148 0 298 243 186 29 chr11 137490209 137490349 -11293123 + MER117 DNA MER1_type 35 196 -1 2613 177 16 2 chr11 137491504 137491995 -11291477 - L1MB4 LINE L1 0 6180 5683 851 229 5 26 chr11 137492520 137492712 -11290760 + MER5A DNA MER1_type 2 189 0 241 324 76 0 chr11 137492722 137492827 -11290645 + MIR SINE MIR 21 133 -75 357 261 35 9 chr11 137492952 137493067 -11290405 - L2 LINE L2 0 3313 3196 560 290 38 26 chr11 137494691 137494966 -11288506 - MLT1I LTR MaLR -50 359 98 186 43 0 0 chr11 137496982 137497005 -11286467 + (T)n Simple_repeat Simple_repeat 1 23 0 2656 43 0 0 chr11 137497148 137497451 -11286021 - AluY SINE Alu -6 305 3 387 330 33 33 chr11 137498424 137498636 -11284836 + MIR SINE MIR 38 249 -13 909 204 105 43 chr11 137500029 137500353 -11283119 - MER2 DNA MER2_type 0 344 1 286 267 145 23 chr11 137500371 137500502 -11282970 + L2 LINE L2 3167 3313 0 978 256 8 8 chr11 137500562 137500804 -11282668 - MIR SINE MIR 0 262 21 1400 248 72 23 chr11 137500920 137501403 -11282069 - L2 LINE L2 0 3313 2807 261 57 0 0 chr11 137504190 137504225 -11279247 + (CAT)n Simple_repeat Simple_repeat 2 36 0 338 272 12 0 chr11 137505038 137505119 -11278353 - L3 LINE CR1 -1 1576 1495 369 276 57 16 chr11 137506466 137506589 -11276883 + L2 LINE L2 3141 3268 -4 1900 110 0 0 chr11 137507905 137508150 -11275322 - AluSg SINE Alu -10 300 56 398 322 22 11 chr11 137510748 137510931 -11272541 - L1MB4 LINE L1 -552 5618 5434 2000 107 53 13 chr11 137513595 137513957 -11269515 - AluSx SINE Alu 0 374 1 332 328 52 0 chr11 137514171 137514305 -11269167 + L2 LINE L2 2920 3060 -212 849 173 20 13 chr11 137514385 137514535 -11268937 - AluJb SINE Alu -26 286 136 404 90 0 30 chr11 137514535 137514602 -11268870 + (TTTC)n Simple_repeat Simple_repeat 2 66 0 847 167 0 0 chr11 137514796 137514976 -11268496 - FLAM_C SINE Alu 0 181 2 359 215 32 21 chr11 137515032 137515125 -11268347 + L2 LINE L2 3145 3238 -34 251 220 20 0 chr11 137516769 137516819 -11266653 + (CA)n Simple_repeat Simple_repeat 2 52 0 208 320 31 21 chr11 137517281 137517378 -11266094 - MIR SINE MIR -83 125 28 1185 224 29 75 chr11 137519945 137520360 -11263112 + L1ME1 LINE L1 5766 6161 -5 235 281 130 62 chr11 137520373 137520519 -11262953 + MIR SINE MIR 37 192 -70 188 417 17 0 chr11 137521380 137521500 -11261972 - MIR SINE MIR -68 140 19 183 162 0 0 chr11 137523819 137523856 -11259616 + (ATG)n Simple_repeat Simple_repeat 2 38 0 477 240 110 13 chr11 137525111 137525267 -11258205 + MER5A DNA MER1_type 11 187 -2 464 328 204 0 chr11 137525338 137525603 -11257869 - L3 LINE CR1 -7 1570 1252 185 310 108 32 chr11 137525869 137526027 -11257445 - L2 LINE L2 -283 2989 2820 1905 149 0 0 chr11 137527555 137527843 -11255629 + AluSx SINE Alu 1 288 -24 322 299 89 20 chr11 137531333 137531500 -11251972 + MIR3 SINE MIR 6 189 -19 200 284 0 114 chr11 137532547 137532568 -11250904 - L2 LINE L2 -4 3309 3287 2065 105 10 7 chr11 137532568 137532864 -11250608 + AluSg SINE Alu 1 297 -13 200 284 0 114 chr11 137532864 137532930 -11250542 - L2 LINE L2 -26 3287 3232 309 109 0 0 chr11 137534246 137534292 -11249180 + (ATTG)n Simple_repeat Simple_repeat 3 48 0 339 325 33 0 chr11 137534481 137534601 -11248871 + MIR3 SINE MIR 81 204 -4 1420 200 100 49 chr11 137536825 137537311 -11246161 - MER66A LTR ERV1 0 478 135 244 258 30 15 chr11 137537506 137537572 -11245900 + L2 LINE L2 3196 3262 -51 296 254 59 68 chr11 137537957 137538075 -11245397 - MIR SINE MIR -67 141 25 225 146 104 21 chr11 137538386 137538434 -11245038 + MER115 DNA AcHobo 199 250 -443 715 255 133 3 chr11 137539916 137540210 -11243262 - LTR16C LTR ERVL 0 491 160 2231 132 6 33 chr11 137540306 137540671 -11242801 + MLT1A1 LTR MaLR 5 359 -6 219 326 63 42 chr11 137541447 137541542 -11241930 - L2 LINE L2 -22 3250 3154 230 290 72 72 chr11 137541607 137541745 -11241727 + MIR SINE MIR 2 139 -123 3649 153 54 60 chr11 137542127 137542900 -11240572 - LTR1 LTR ERV1 0 785 17 415 286 99 12 chr11 137544584 137544745 -11238727 + MIR SINE MIR 46 220 -42 204 194 32 11 chr11 137545144 137545212 -11238260 + MIR SINE MIR 84 152 -110 765 179 0 0 chr11 137545706 137546031 -11237441 + (CA)n Simple_repeat Simple_repeat 1 325 0 193 138 0 0 chr11 137546628 137546657 -11236815 - MIR3 SINE MIR -11 197 169 198 276 0 17 chr11 137547726 137547784 -11235688 - MIR SINE MIR -50 212 156 536 261 126 1 chr11 137547837 137548146 -11235326 + LTR33A LTR ERVL 13 397 -126 307 296 79 93 chr11 137548895 137549250 -11234222 + L2 LINE L2 2923 3272 0 694 278 64 5 chr11 137549958 137550145 -11233327 + MIR SINE MIR 4 201 -61 239 93 23 0 chr11 137550852 137550895 -11232577 + (GA)n Simple_repeat Simple_repeat 1 44 0 436 304 43 16 chr11 137551797 137551981 -11231491 - LTR16A1 LTR ERVL -30 427 239 203 286 91 0 chr11 137552236 137552313 -11231159 + MIR SINE MIR 107 190 -72 2002 66 81 0 chr11 137552506 137552778 -11230694 + AluY SINE Alu 1 294 -17 447 92 0 0 chr11 137552778 137552843 -11230629 + (TA)n Simple_repeat Simple_repeat 1 65 0 360 252 93 36 chr11 137552843 137552975 -11230497 + HAL1b LINE L1 1203 1342 -6 324 283 44 18 chr11 137553205 137553318 -11230154 + MER103 DNA DNA 50 165 -1 2066 136 123 23 chr11 137553856 137554245 -11229227 - MSTA LTR MaLR 0 428 1 252 273 66 16 chr11 137554301 137554422 -11229050 + MIR SINE MIR 11 137 -125 3337 146 59 27 chr11 137554529 137555188 -11228284 + L1MB3 LINE L1 5504 6183 0 344 22 22 0 chr11 137555228 137555273 -11228199 + (CA)n Simple_repeat Simple_repeat 1 46 0 217 287 61 19 chr11 137556559 137556692 -11226780 + MIR SINE MIR 23 158 -66 2300 76 0 7 chr11 137557047 137557351 -11226121 + AluSc SINE Alu 1 302 -7 180 379 32 0 chr11 137559101 137559196 -11224276 + MIR SINE MIR 109 206 -56 3925 119 15 0 chr11 137559882 137560428 -11223044 - MER41A LTR ERV1 0 554 1 12594 101 28 25 chr11 137560428 137562707 -11220765 - MER41A-int LTR ERV1 -2 5944 2848 203 27 0 81 chr11 137562707 137562744 -11220728 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 12594 101 28 25 chr11 137562744 137562885 -11220587 - MER41A-int LTR ERV1 -3098 2848 2709 1604 110 66 18 chr11 137562864 137563235 -11220237 - MER41A-int LTR ERV1 -3115 3671 2733 * 1605 115 0 74 chr11 137563243 137563512 -11219960 - MER41A-int LTR ERV1 -3753 2510 2262 719 116 9 0 chr11 137563518 137563630 -11219842 - MER41A-int LTR ERV1 -3932 2014 1902 5390 142 41 7 chr11 137563632 137565015 -11218457 - MER41A-int LTR ERV1 -4184 3580 1 341 120 360 0 chr11 137565111 137565186 -11218286 - MER41A-int LTR ERV1 -7654 102 1 291 143 351 0 chr11 137565195 137565272 -11218200 - MER41A-int LTR ERV1 -7652 104 1 3758 99 33 15 chr11 137565272 137565815 -11217657 - MER41A LTR ERV1 0 554 2 441 328 30 50 chr11 137566846 137567108 -11216364 + L3b LINE CR1 1184 1440 -143 299 301 173 23 chr11 137567738 137567871 -11215601 - L2 LINE L2 -1 3271 3119 421 276 273 34 chr11 137567954 137568198 -11215274 - L2 LINE L2 -19 3253 3069 2610 209 91 15 chr11 137568198 137568876 -11214596 - MER44D DNA MER2_type 0 605 4 421 276 273 34 chr11 137568876 137568941 -11214531 - L2 LINE L2 -203 3069 1414 463 308 86 24 chr11 137572082 137572321 -11211151 - MIR SINE MIR -7 255 4 194 269 56 150 chr11 137572339 137572499 -11210973 - L2 LINE L2 -1 3312 3168 915 284 100 51 chr11 137573179 137573627 -11209845 - MER77 LTR ERV1 -8 597 128 186 368 38 38 chr11 137573798 137573904 -11209568 + L2 LINE L2 3197 3302 -11 431 111 0 33 chr11 137577947 137578037 -11205435 + (GA)n Simple_repeat Simple_repeat 2 88 0 526 302 34 17 chr11 137578227 137578406 -11205066 - MIR SINE MIR -73 189 8 247 330 57 70 chr11 137579451 137579766 -11203706 + L2 LINE L2 3001 3311 -2 257 300 30 10 chr11 137580602 137580702 -11202770 + MARNA DNA Mariner 47 148 -438 192 283 72 56 chr11 137581007 137581201 -11202271 + MIR SINE MIR 17 214 -48 712 258 90 17 chr11 137581263 137581496 -11201976 - MIR SINE MIR -7 255 6 292 289 101 25 chr11 137581671 137581830 -11201642 - MARNA DNA Mariner -53 533 363 2050 133 0 0 chr11 137581924 137582218 -11201254 + AluSg SINE Alu 1 294 -16 351 323 89 59 chr11 137583078 137583381 -11200091 - L2 LINE L2 0 3272 2961 793 183 0 0 chr11 137583542 137583673 -11199799 + MIR SINE MIR 82 212 -50 2047 180 20 22 chr11 137583682 137584127 -11199345 + Charlie4a DNA MER1_type 31 474 -34 2546 81 25 123 chr11 137584303 137584774 -11198698 + MER4A LTR ERV1 1 425 -239 481 119 75 24 chr11 137584790 137584928 -11198544 + MER4C LTR ERV1 277 448 -17 377 253 111 25 chr11 137584934 137585096 -11198376 + MIR SINE MIR 77 252 -10 1259 256 176 4 chr11 137586375 137586836 -11196636 + MLT1H1 LTR MaLR 2 541 -14 467 294 135 0 chr11 137587141 137587304 -11196168 - MIR SINE MIR -5 257 73 307 264 32 56 chr11 137587313 137587334 -11196138 - MIR SINE MIR -73 189 169 1893 196 35 43 chr11 137587334 137587843 -11195629 - MLT1D LTR MaLR 0 505 1 307 264 32 56 chr11 137587843 137587946 -11195526 - MIR SINE MIR -93 169 68 213 39 0 0 chr11 137588043 137588069 -11195403 + (TA)n Simple_repeat Simple_repeat 1 26 0 320 289 94 38 chr11 137588491 137588650 -11194822 - MIR SINE MIR -74 188 21 449 226 10 20 chr11 137589260 137589362 -11194110 + L2 LINE L2 3211 3311 -2 185 315 56 22 chr11 137589501 137589590 -11193882 + MER5B DNA MER1_type 87 178 0 288 0 0 0 chr11 137590742 137590774 -11192698 + (CA)n Simple_repeat Simple_repeat 2 33 0 189 0 0 0 chr11 137590774 137590795 -11192677 + (CTA)n Simple_repeat Simple_repeat 3 23 0 440 283 140 19 chr11 137590832 137591065 -11192407 - MIR SINE MIR -3 259 3 2340 63 0 7 chr11 137593564 137593867 -11189605 + AluY SINE Alu 1 301 -10 500 311 75 9 chr11 137593869 137594081 -11189391 - MIR SINE MIR -1 261 36 6534 73 27 0 chr11 137594452 137595606 -11187866 - L1PA11 LINE L1 -1 6173 5020 232 317 0 0 chr11 137596828 137596888 -11186584 - L2 LINE L2 -19 3294 3235 1975 153 0 0 chr11 137597511 137597818 -11185654 + AluSq SINE Alu 1 307 -6 389 186 0 47 chr11 137597945 137598031 -11185441 - L2 LINE L2 -35 3278 3197 231 261 0 43 chr11 137601525 137601594 -11181878 + MIR SINE MIR 176 241 -21 243 304 35 35 chr11 137601712 137601827 -11181645 - L2 LINE L2 -283 2989 2875 3126 66 5 0 chr11 137602337 137602730 -11180742 + L1PA8 LINE L1 5776 6170 -2 303 250 113 8 chr11 137602947 137603071 -11180401 - MIR3 SINE MIR -3 205 69 234 280 13 27 chr11 137603618 137603693 -11179779 + CT-rich Low_complexity Low_complexity 3 76 0 182 219 16 0 chr11 137605333 137605397 -11178075 + (CATA)n Simple_repeat Simple_repeat 4 68 0 25 51 0 0 chr11 137605877 137605916 -11177556 + AT_rich Low_complexity Low_complexity 1 39 0 244 329 58 67 chr11 137606035 137606379 -11177093 + L2 LINE L2 2932 3272 0 3253 160 34 14 chr11 137606439 137607028 -11176444 - MER6A DNA MER2_type 0 605 5 830 174 30 18 chr11 137607454 137607621 -11175851 - AluJo SINE Alu -21 291 123 540 317 72 0 chr11 137607623 137607844 -11175628 - MIR SINE MIR -6 256 20 320 203 338 15 chr11 137609336 137609469 -11174003 - MER5B DNA MER1_type -1 177 2 546 240 0 0 chr11 137609907 137610078 -11173394 + (CA)n Simple_repeat Simple_repeat 2 172 0 269 235 0 10 chr11 137610090 137610192 -11173280 + (CA)n Simple_repeat Simple_repeat 1 101 0 257 300 225 8 chr11 137610257 137610377 -11173095 - MIR3 SINE MIR -60 148 3 1349 128 0 24 chr11 137610655 137610866 -11172606 - AluSg/x SINE Alu -21 291 86 3084 168 2 31 chr11 137611139 137611658 -11171814 - MER52A LTR ERV1 0 1755 1252 364 310 223 11 chr11 137612826 137613010 -11170462 - MIR SINE MIR -21 241 19 830 145 0 0 chr11 137613402 137613533 -11169939 + AluJb SINE Alu 179 309 -3 4191 161 41 30 chr11 137614433 137614516 -11168956 - L1MC2 LINE L1 -9 6335 6254 1916 101 0 47 chr11 137614516 137614839 -11168633 + AluSx SINE Alu 1 309 0 4191 161 41 30 chr11 137614839 137615590 -11167882 - L1MC2 LINE L1 -90 6254 5491 491 304 55 17 chr11 137615659 137615840 -11167632 - MIR SINE MIR -57 205 18 25 0 0 0 chr11 137615999 137616024 -11167448 + AT_rich Low_complexity Low_complexity 1 25 0 778 294 124 3 chr11 137617366 137617696 -11165776 - L1ME3A LINE L1 -208 5962 5593 839 286 5 0 chr11 137617700 137617889 -11165583 + MIR SINE MIR 2 191 -71 402 280 89 13 chr11 137617918 137618075 -11165397 - MIR SINE MIR -71 191 23 21 36 0 0 chr11 137619216 137619244 -11164228 + AT_rich Low_complexity Low_complexity 1 28 0 444 318 27 0 chr11 137619669 137619817 -11163655 - MIR SINE MIR -48 214 63 1321 292 111 48 chr11 137620072 137621018 -11162454 - L2 LINE L2 -840 2474 1469 378 283 65 87 chr11 137621001 137621231 -11162241 - L2 LINE L2 -7 3265 3041 * 647 214 244 30 chr11 137622090 137622291 -11161181 + MIR SINE MIR 6 249 -13 829 257 177 16 chr11 137623813 137624264 -11159208 - L1ME4a LINE L1 -32 6089 5566 234 0 0 0 chr11 137624297 137624323 -11159149 + (T)n Simple_repeat Simple_repeat 1 26 0 2201 98 10 3 chr11 137624437 137624744 -11158728 - AluSc SINE Alu 0 309 1 434 309 49 16 chr11 137625572 137625695 -11157777 + MER91A DNA MER1_type 2 128 -68 512 276 49 16 chr11 137625777 137625900 -11157572 + MER91A DNA MER1_type 2 128 -68 5995 145 101 92 chr11 137625933 137626517 -11156955 - L1MC3 LINE L1 -2 7783 7206 379 226 32 21 chr11 137626517 137626610 -11156862 - MLT1F1 LTR MaLR -433 134 41 5995 145 101 92 chr11 137626610 137626847 -11156625 - L1MC3 LINE L1 -579 7206 6973 1879 204 32 28 chr11 137626847 137627312 -11156160 + MLT1C LTR MaLR 1 467 0 5995 145 101 92 chr11 137627312 137627793 -11155679 - L1MC3 LINE L1 -812 6973 6376 328 220 34 41 chr11 137627969 137628078 -11155394 - MLT1I LTR MaLR 0 409 319 250 248 43 60 chr11 137628170 137628287 -11155185 - MLT1J2 LTR MaLR -331 119 5 666 220 165 33 chr11 137628768 137629041 -11154431 + L1ME4a LINE L1 5813 6121 0 393 259 19 17 chr11 137629047 137629189 -11154283 - MIR SINE MIR -29 179 38 198 177 129 65 chr11 137629410 137629472 -11154000 - MIR SINE MIR -81 181 116 271 319 14 14 chr11 137630648 137630720 -11152752 - L2 LINE L2 -1 3271 3200 264 363 99 25 chr11 137630954 137631307 -11152165 - L2 LINE L2 -348 2966 2588 204 297 0 16 chr11 137631339 137631403 -11152069 - MIR SINE MIR -12 250 188 885 302 20 18 chr11 137631608 137631949 -11151523 + L1ME4a LINE L1 5519 5860 -261 433 224 29 92 chr11 137632060 137632332 -11151140 + L1ME4a LINE L1 5866 6120 -1 223 429 57 0 chr11 137632442 137632547 -11150925 - L2 LINE L2 -47 3225 3115 192 319 100 31 chr11 137632863 137633028 -11150444 + L2 LINE L2 2767 2946 -326 792 216 49 0 chr11 137633028 137633190 -11150282 - MER20 DNA MER1_type -3 216 47 275 256 234 7 chr11 137633878 137634022 -11149450 - MIR SINE MIR -65 197 20 267 317 24 0 chr11 137634682 137634764 -11148708 - L2 LINE L2 -16 3297 3214 27 0 0 0 chr11 137636149 137636176 -11147296 + AT_rich Low_complexity Low_complexity 1 27 0 192 380 83 0 chr11 137636524 137636632 -11146840 - L2 LINE L2 -1 3271 3155 258 81 0 0 chr11 137636636 137636673 -11146799 + (CA)n Simple_repeat Simple_repeat 2 38 0 1710 207 39 29 chr11 137636782 137637192 -11146280 - MLT2D LTR ERVL 0 414 1 181 130 0 111 chr11 137637684 137637738 -11145734 + L2 LINE L2 2688 2735 -579 300 333 53 53 chr11 137638654 137638765 -11144707 - L2 LINE L2 -2 3311 3198 503 141 0 0 chr11 137638765 137638843 -11144629 + MADE1 DNA Mariner 1 78 -2 300 333 53 53 chr11 137638843 137638938 -11144534 - L2 LINE L2 -114 3199 3105 441 339 51 51 chr11 137638948 137639202 -11144270 + MIR SINE MIR 3 256 -6 1957 132 0 3 chr11 137639204 137639500 -11143972 + AluSx SINE Alu 1 295 -17 442 300 40 47 chr11 137640440 137640590 -11142882 - MIR SINE MIR -101 161 13 226 352 105 0 chr11 137640623 137640728 -11142744 + L2 LINE L2 3156 3271 -1 211 301 92 43 chr11 137641193 137641356 -11142116 - L2 LINE L2 -212 3060 2890 825 297 42 50 chr11 137641377 137642001 -11141471 + L2 LINE L2 2700 3313 0 1285 83 4 17 chr11 137642001 137642240 -11141232 + (TGGA)n Simple_repeat Simple_repeat 2 237 0 204 259 0 19 chr11 137645063 137645117 -11138355 - MIR SINE MIR -90 172 120 365 321 65 1 chr11 137646587 137646741 -11136731 - MIR SINE MIR -62 146 6 360 318 182 12 chr11 137647059 137647229 -11136243 - MIR3 SINE MIR 0 208 10 632 322 134 11 chr11 137647687 137647970 -11135502 - MLT1J LTR MaLR -193 318 1 342 67 0 0 chr11 137648125 137648170 -11135302 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 1558 151 22 7 chr11 137648173 137648444 -11135028 - AluSx SINE Alu -37 275 1 668 291 40 6 chr11 137649492 137649667 -11133805 - MIR SINE MIR -77 185 5 289 183 14 70 chr11 137650180 137650251 -11133221 + L2 LINE L2 3245 3311 -2 436 189 35 49 chr11 137650769 137650912 -11132560 - Charlie7 DNA MER1_type -1 2611 2471 2017 110 0 24 chr11 137650913 137651203 -11132269 + AluSg SINE Alu 1 283 -27 286 233 68 14 chr11 137651253 137651326 -11132146 - Charlie7 DNA MER1_type -2535 77 1 266 345 42 36 chr11 137652409 137652577 -11130895 - MIR3 SINE MIR 0 208 40 233 73 0 49 chr11 137653008 137653049 -11130423 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 530 66 0 13 chr11 137654441 137654517 -11128955 + (TC)n Simple_repeat Simple_repeat 2 76 0 216 261 0 0 chr11 137654758 137654827 -11128645 + T-rich Low_complexity Low_complexity 1 69 0 21 57 0 0 chr11 137656184 137656219 -11127253 + AT_rich Low_complexity Low_complexity 1 35 0 197 328 95 35 chr11 137656547 137656663 -11126809 - MIR SINE MIR -63 145 23 470 354 66 6 chr11 137658156 137658337 -11125135 - MIR SINE MIR -50 212 21 886 140 0 0 chr11 137658343 137658479 -11124993 + FLAM_C SINE Alu 6 141 -2 495 344 88 7 chr11 137658836 137659109 -11124363 + L3b LINE CR1 1174 1468 -115 279 325 93 16 chr11 137659518 137659644 -11123828 + MIR SINE MIR 38 172 -64 280 316 105 0 chr11 137660084 137660179 -11123293 + MIR SINE MIR 21 125 -83 190 225 0 0 chr11 137660181 137660221 -11123251 - L2 LINE L2 -11 3302 3263 * 335 306 73 50 chr11 137660192 137660411 -11123061 - MIR SINE MIR -16 246 23 196 298 96 21 chr11 137660415 137660509 -11122963 + MIR3 SINE MIR 101 201 -7 262 307 139 0 chr11 137662590 137662691 -11120781 - L2 LINE L2 0 3313 3199 215 317 10 40 chr11 137662979 137663080 -11120392 - MIR SINE MIR -16 246 149 285 345 156 36 chr11 137663567 137663926 -11119546 - L2 LINE L2 -694 2620 2219 327 343 52 52 chr11 137663926 137664139 -11119333 + L2 LINE L2 3025 3237 -35 193 382 71 27 chr11 137664170 137664395 -11119077 - L2 LINE L2 -1134 2180 1946 237 128 0 0 chr11 137664833 137664880 -11118592 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 188 304 80 58 chr11 137665311 137665449 -11118023 + L2 LINE L2 2266 2406 -908 384 327 9 0 chr11 137665456 137665569 -11117903 - L2 LINE L2 -20 3293 3180 198 288 65 65 chr11 137666202 137666355 -11117117 + L2 LINE L2 2897 3049 -223 668 237 76 30 chr11 137666525 137666723 -11116749 - MIR SINE MIR -19 243 37 256 262 0 60 chr11 137666829 137666913 -11116559 + L2 LINE L2 3193 3271 -1 299 309 11 11 chr11 137666916 137667010 -11116462 + MER5A DNA MER1_type 71 164 -25 301 250 16 0 chr11 137667045 137667109 -11116363 - MIR3 SINE MIR -50 158 94 219 36 0 0 chr11 137667158 137667186 -11116286 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 562 296 23 12 chr11 137667653 137667825 -11115647 + MIR3 SINE MIR 19 192 -16 280 281 12 37 chr11 137668414 137668496 -11114976 + MIR SINE MIR 57 136 -72 289 323 94 24 chr11 137668515 137668642 -11114830 + MER5A DNA MER1_type 17 152 -37 204 40 0 0 chr11 137670282 137670307 -11113165 + (TTTC)n Simple_repeat Simple_repeat 4 28 0 294 337 0 20 chr11 137670882 137670980 -11112492 + MIR SINE MIR 68 163 -99 648 268 71 22 chr11 137671167 137671391 -11112081 + MIR SINE MIR 14 248 -14 1710 163 12 21 chr11 137672276 137672613 -11110859 + L1MA3 LINE L1 5970 6303 -2 321 176 0 106 chr11 137673578 137673615 -11109857 + MIR3 SINE MIR 124 149 -59 1096 144 27 40 chr11 137673615 137673837 -11109635 - MER20 DNA MER1_type 0 219 1 321 176 0 106 chr11 137673837 137673884 -11109588 + MIR3 SINE MIR 149 199 -9 573 230 121 41 chr11 137673902 137674130 -11109342 + MIR SINE MIR 18 262 0 186 283 43 0 chr11 137674249 137674295 -11109177 - L2 LINE L2 -12 3301 3254 201 273 30 15 chr11 137675480 137675546 -11107926 + L2 LINE L2 2990 3056 -216 2325 97 13 0 chr11 137675660 137675959 -11107513 - AluSp SINE Alu -10 303 1 272 228 433 0 chr11 137676187 137676314 -11107158 - MER5A DNA MER1_type 0 189 8 296 329 0 0 chr11 137678663 137678739 -11104733 + MIR SINE MIR 24 99 -109 340 329 147 53 chr11 137678898 137679302 -11104170 - L2 LINE L2 -221 3051 2686 2507 71 0 3 chr11 137679302 137679610 -11103862 + AluY SINE Alu 1 307 -4 340 329 147 53 chr11 137679610 137679628 -11103844 - L2 LINE L2 -586 2686 2671 831 186 71 38 chr11 137679628 137679838 -11103634 - MER20 DNA MER1_type 0 219 3 340 329 147 53 chr11 137679838 137680432 -11103040 - L2 LINE L2 -601 2671 1929 306 268 45 9 chr11 137681812 137681924 -11101548 - L2 LINE L2 -24 3248 3133 311 330 29 0 chr11 137682018 137682121 -11101351 - MIR SINE MIR -87 175 70 320 316 79 90 chr11 137683175 137683641 -11099831 - L2 LINE L2 -2 3270 2810 2131 116 0 30 chr11 137683663 137683966 -11099506 + AluSx SINE Alu 1 294 -18 403 212 24 0 chr11 137684439 137684524 -11098948 - MIR3 SINE MIR -52 156 70 237 264 172 0 chr11 137685296 137685383 -11098089 + MIR SINE MIR 53 154 -108 268 292 0 0 chr11 137685387 137685452 -11098020 + L2 LINE L2 3247 3311 -2 211 313 78 16 chr11 137686598 137686726 -11096746 - L2 LINE L2 0 3313 3178 256 296 45 97 chr11 137687134 137687381 -11096091 - L2 LINE L2 -22 3250 3017 199 298 53 0 chr11 137687431 137687488 -11095984 - L2 LINE L2 -221 3051 2992 475 246 111 8 chr11 137687497 137687623 -11095849 - L2 LINE L2 0 3313 3175 1048 226 0 35 chr11 137687653 137687879 -11095593 - MER58A DNA MER1_type -6 218 1 401 295 70 64 chr11 137687879 137688221 -11095251 - L2 LINE L2 -157 3156 2813 433 289 94 60 chr11 137688722 137688788 -11094684 - MIR SINE MIR -22 240 178 2407 96 7 0 chr11 137688788 137689091 -11094381 - AluSp SINE Alu -8 305 1 433 289 94 60 chr11 137689091 137689252 -11094220 - MIR SINE MIR -84 178 3 423 254 25 25 chr11 137689600 137689718 -11093754 - MER94 DNA DNA -1 133 16 684 206 143 21 chr11 137690054 137690243 -11093229 - L2 LINE L2 0 3313 3102 * 2139 270 204 42 chr11 137690242 137691468 -11092004 - L2 LINE L2 -353 2961 1537 226 284 103 17 chr11 137691579 137691695 -11091777 + MIR SINE MIR 85 210 -52 346 323 81 20 chr11 137693864 137694062 -11089410 + MIR SINE MIR 47 256 -6 334 346 16 18 chr11 137694094 137694336 -11089136 + CT-rich Low_complexity Low_complexity 1 241 0 205 262 16 0 chr11 137694617 137694678 -11088794 + CT-rich Low_complexity Low_complexity 4 65 0 1026 208 80 26 chr11 137695508 137695820 -11087652 - LTR16C LTR ERVL -14 477 149 663 231 21 92 chr11 137696021 137696134 -11087338 - MER58A DNA MER1_type -2196 224 135 557 231 103 6 chr11 137696134 137696290 -11087182 + MER96 DNA MER1_type 4 174 -1 663 231 21 92 chr11 137696290 137696414 -11087058 - MER58A DNA MER1_type -2285 135 4 290 249 187 34 chr11 137696416 137696625 -11086847 + L2 LINE L2 2872 3112 -160 270 313 86 52 chr11 137696594 137696862 -11086610 + L2 LINE L2 2368 2644 -670 * 378 286 44 141 chr11 137696908 137697451 -11086021 + L2 LINE L2 2776 3266 -6 198 103 0 0 chr11 137698047 137698076 -11085396 + (CA)n Simple_repeat Simple_repeat 1 29 0 225 221 26 78 chr11 137698550 137698627 -11084845 + MER5A DNA MER1_type 33 105 -84 2108 105 0 17 chr11 137698747 137699043 -11084429 - AluSx SINE Alu -1 311 21 24 53 0 0 chr11 137699448 137699486 -11083986 + AT_rich Low_complexity Low_complexity 1 38 0 342 322 61 53 chr11 137700184 137700429 -11083043 + MIR SINE MIR 1 247 -15 2072 144 63 0 chr11 137700509 137700871 -11082601 - MLT1B LTR MaLR 0 390 6 230 263 95 21 chr11 137701155 137701250 -11082222 + MIR SINE MIR 141 242 -20 244 346 30 61 chr11 137701343 137701574 -11081898 - L2 LINE L2 -707 2607 2384 244 279 39 39 chr11 137702875 137703004 -11080468 + L1P LINE L1 4879 5007 -1139 1506 189 26 42 chr11 137703105 137703411 -11080061 + AluJb SINE Alu 11 311 -1 581 263 125 43 chr11 137703499 137703940 -11079532 + L1MC/D LINE L1 5270 5746 -2062 816 338 66 18 chr11 137704092 137704592 -11078880 - MLT1G1 LTR MaLR 0 595 72 221 182 18 0 chr11 137704633 137704688 -11078784 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 2919 134 5 2 chr11 137704688 137705112 -11078360 - MSTB LTR MaLR -1 425 1 727 274 71 31 chr11 137706708 137706934 -11076538 + MIR SINE MIR 21 255 -7 336 270 45 18 chr11 137707005 137707116 -11076356 + MER91C DNA MER1_type 25 138 -2 533 318 84 21 chr11 137708068 137708307 -11075165 - MIR SINE MIR -6 256 3 316 198 81 72 chr11 137708322 137708433 -11075039 - MIR SINE MIR -97 165 54 315 329 94 27 chr11 137708468 137708617 -11074855 - MIR SINE MIR -77 185 27 561 76 13 0 chr11 137709800 137709879 -11073593 - MADE1 DNA Mariner 0 80 1 1826 186 0 0 chr11 137710133 137710429 -11073043 - AluJo SINE Alu -16 296 1 1039 244 42 0 chr11 137710613 137710924 -11072548 + MER33 DNA MER1_type 1 324 0 240 217 0 33 chr11 137712416 137712476 -11070996 + CT-rich Low_complexity Low_complexity 4 61 0 231 355 66 13 chr11 137712784 137712936 -11070536 - L2 LINE L2 0 3272 3113 * 260 261 46 0 chr11 137712926 137712991 -11070481 - MIR SINE MIR -109 153 86 405 286 186 20 chr11 137713332 137713531 -11069941 - MIR SINE MIR -11 251 20 2241 115 0 10 chr11 137714064 137714369 -11069103 - AluSx SINE Alu -10 302 1 21 0 0 0 chr11 137714466 137714487 -11068985 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr11 137714907 137714934 -11068538 + (T)n Simple_repeat Simple_repeat 1 27 0 369 273 66 50 chr11 137714973 137715094 -11068378 + MIR3 SINE MIR 2 124 -84 823 221 70 19 chr11 137715144 137715357 -11068115 - MER58A DNA MER1_type 0 224 1 225 0 0 0 chr11 137716710 137716735 -11066737 + (TG)n Simple_repeat Simple_repeat 1 25 0 2042 125 3 11 chr11 137716881 137717206 -11066266 - AluSx SINE Alu 0 323 1 1037 186 5 0 chr11 137717304 137717503 -11065969 - MLT1H LTR MaLR -312 237 38 3725 151 13 36 chr11 137717505 137717770 -11065702 - L1MB2 LINE L1 -182 5989 5719 2265 132 0 0 chr11 137717770 137718081 -11065391 - AluSx SINE Alu -1 311 1 3725 151 13 36 chr11 137718081 137718530 -11064942 - L1MB2 LINE L1 -452 5719 5292 1287 281 55 38 chr11 137718772 137719359 -11064113 - L1ME3A LINE L1 -234 5936 5335 233 277 66 7 chr11 137719332 137719469 -11064003 + L1M4 LINE L1 5146 5290 -856 * 377 39 20 0 chr11 137721261 137721312 -11062160 + (TC)n Simple_repeat Simple_repeat 2 53 0 373 299 80 59 chr11 137722508 137722695 -11060777 + L2 LINE L2 3082 3272 0 23 0 0 0 chr11 137722940 137722963 -11060509 + AT_rich Low_complexity Low_complexity 1 23 0 2100 139 3 7 chr11 137723467 137723777 -11059695 + AluSx SINE Alu 3 311 -1 184 302 171 8 chr11 137723882 137724011 -11059461 + L2 LINE L2 3163 3312 -1 26 0 0 0 chr11 137724780 137724806 -11058666 + AT_rich Low_complexity Low_complexity 1 26 0 296 357 0 0 chr11 137725329 137725427 -11058045 + GA-rich Low_complexity Low_complexity 2 99 0 394 310 155 0 chr11 137726716 137726871 -11056601 - MIR SINE MIR -3 259 81 1187 210 0 5 chr11 137727190 137727404 -11056068 + AluJb SINE Alu 3 215 -97 1965 141 36 27 chr11 137727464 137727798 -11055674 + MER1B DNA MER1_type 1 337 0 521 194 28 0 chr11 137727930 137728038 -11055434 - MIR SINE MIR -70 192 82 238 170 0 21 chr11 137728603 137728650 -11054822 - L2 LINE L2 -4 3309 3264 183 80 0 0 chr11 137729921 137729946 -11053526 + (TA)n Simple_repeat Simple_repeat 2 26 0 232 260 20 0 chr11 137730141 137730191 -11053281 - L2 LINE L2 -11 3261 3211 462 267 133 44 chr11 137730739 137730964 -11052508 + MIR SINE MIR 6 250 -12 706 285 91 39 chr11 137730981 137731367 -11052105 - MLT1L LTR MaLR -9 606 201 2437 80 0 0 chr11 137731714 137732025 -11051447 - AluY SINE Alu 0 311 1 374 278 42 47 chr11 137732735 137732926 -11050546 + MIR SINE MIR 34 223 -39 1017 189 42 106 chr11 137732973 137733285 -11050187 + L1MB8 LINE L1 5887 6178 0 1540 165 0 11 chr11 137733292 137733559 -11049913 + AluJo SINE Alu 37 300 -12 610 324 197 28 chr11 137734013 137734662 -11048810 + L2 LINE L2 2093 2851 -463 264 167 0 0 chr11 137735975 137736017 -11047455 + L2 LINE L2 3217 3258 -14 293 303 90 35 chr11 137736237 137736382 -11047090 - MIR3 SINE MIR -2 206 54 1546 131 67 26 chr11 137737681 137737993 -11045479 - L1MC3 LINE L1 -1694 6091 5767 3567 214 103 19 chr11 137738287 137738979 -11044493 - L1MC3 LINE L1 -743 5403 4770 660 229 0 8 chr11 137738979 137739110 -11044362 + FLAM_A SINE Alu 2 131 -2 3567 214 103 19 chr11 137739110 137740122 -11043350 - L1MC3 LINE L1 -1376 4770 3912 1769 291 28 12 chr11 137740122 137740699 -11042773 - L2 LINE L2 -616 2698 2113 677 34 0 11 chr11 137741571 137741660 -11041812 + (GAAA)n Simple_repeat Simple_repeat 1 88 0 1980 176 32 3 chr11 137741929 137742276 -11041196 + MLT1A1 LTR MaLR 9 365 0 257 315 11 11 chr11 137744243 137744335 -11039137 - MER5B DNA MER1_type -1 177 86 705 266 44 20 chr11 137744377 137744580 -11038892 - MIR SINE MIR -42 220 13 2061 168 43 3 chr11 137744594 137744945 -11038527 - MLT1A1 LTR MaLR 0 365 1 2094 83 0 0 chr11 137746884 137747162 -11036310 + AluY SINE Alu 24 301 -10 648 268 71 22 chr11 137747353 137747577 -11035895 + MIR SINE MIR 14 248 -14 1710 163 12 21 chr11 137748462 137748799 -11034673 + L1MA3 LINE L1 5970 6303 -2 321 176 0 106 chr11 137749764 137749801 -11033671 + MIR3 SINE MIR 124 149 -59 1096 144 27 40 chr11 137749801 137750023 -11033449 - MER20 DNA MER1_type 0 219 1 321 176 0 106 chr11 137750023 137750070 -11033402 + MIR3 SINE MIR 149 199 -9 573 230 121 41 chr11 137750088 137750316 -11033156 + MIR SINE MIR 18 262 0 186 283 43 0 chr11 137750435 137750481 -11032991 - L2 LINE L2 -12 3301 3254 201 273 30 15 chr11 137751666 137751732 -11031740 + L2 LINE L2 2990 3056 -216 2176 97 13 0 chr11 137751846 137752145 -11031327 - AluSp SINE Alu -10 303 1 265 228 433 0 chr11 137752373 137752500 -11030972 - MER5A DNA MER1_type 0 189 8 293 329 0 0 chr11 137754851 137754927 -11028545 + MIR SINE MIR 24 99 -109 292 329 147 53 chr11 137755086 137755490 -11027982 - L2 LINE L2 -221 3051 2686 2359 71 0 3 chr11 137755490 137755798 -11027674 + AluY SINE Alu 1 307 -4 292 329 147 53 chr11 137755798 137755816 -11027656 - L2 LINE L2 -586 2686 2671 807 186 71 38 chr11 137755816 137756026 -11027446 - MER20 DNA MER1_type 0 219 3 292 329 147 53 chr11 137756026 137756620 -11026852 - L2 LINE L2 -601 2671 1929 293 268 45 9 chr11 137758000 137758112 -11025360 - L2 LINE L2 -24 3248 3133 324 318 27 0 chr11 137758200 137758310 -11025162 - MIR SINE MIR -80 182 70 298 316 79 90 chr11 137759364 137759830 -11023642 - L2 LINE L2 -2 3270 2810 1859 98 27 82 chr11 137759852 137760180 -11023292 + AluSq SINE Alu 1 310 -3 210 143 0 0 chr11 137760209 137760244 -11023228 + (TG)n Simple_repeat Simple_repeat 1 35 0 189 182 0 0 chr11 137761607 137761640 -11021832 + L2 LINE L2 3271 3303 -10 221 325 152 25 chr11 137761692 137761889 -11021583 - L3b LINE CR1 -146 1437 1216 695 277 84 16 chr11 137762693 137762942 -11020530 + LTR33 LTR ERVL 4 269 -252 381 287 63 7 chr11 137763011 137763154 -11020318 + LTR33 LTR ERVL 371 521 0 184 262 164 33 chr11 137763454 137763515 -11019957 - MIR SINE MIR -107 155 87 324 0 0 0 chr11 137764275 137764311 -11019161 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 465 328 15 44 chr11 137764311 137764515 -11018957 - MIR SINE MIR -27 235 38 402 242 187 40 chr11 137764824 137765022 -11018450 - MIR SINE MIR -1 261 35 945 177 39 6 chr11 137765162 137765343 -11018129 - MER5A DNA MER1_type 0 189 3 180 0 0 0 chr11 137766107 137766127 -11017345 + (GA)n Simple_repeat Simple_repeat 1 20 0 2102 82 0 0 chr11 137766829 137767108 -11016364 + AluY SINE Alu 24 302 -9 186 43 0 0 chr11 137767363 137767386 -11016086 + (A)n Simple_repeat Simple_repeat 1 23 0 1232 184 172 30 chr11 137767535 137767911 -11015561 + MSTD LTR MaLR 1 396 0 781 224 18 12 chr11 137768445 137768615 -11014857 + MER5B DNA MER1_type 8 178 0 370 321 15 8 chr11 137770423 137770554 -11012918 - MER5A DNA MER1_type -3 186 55 267 266 73 18 chr11 137770899 137771008 -11012464 - MIR SINE MIR 0 262 148 363 23 0 0 chr11 137773007 137773051 -11010421 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 1535 209 0 13 chr11 137773203 137773519 -11009953 - AluSx SINE Alu 0 312 1 333 244 75 89 chr11 137773958 137774121 -11009351 - MIR SINE MIR -45 163 4 30 0 0 0 chr11 137775471 137775501 -11007971 + AT_rich Low_complexity Low_complexity 1 30 0 308 278 122 17 chr11 137776779 137776894 -11006578 - MIR SINE MIR -50 212 86 606 311 66 20 chr11 137777624 137777868 -11005604 + MIR SINE MIR 8 262 0 2452 124 6 3 chr11 137779104 137779458 -11004014 + THE1A LTR MaLR 1 355 0 11817 93 17 0 chr11 137779458 137781012 -11002460 + THE1A-int LTR MaLR 1 1580 0 2291 130 6 3 chr11 137781012 137781366 -11002106 + THE1A LTR MaLR 1 355 0 1721 273 71 17 chr11 137781562 137781965 -11001507 - L2 LINE L2 0 3313 2933 2002 137 176 6 chr11 137781965 137782329 -11001143 - MSTA LTR MaLR 0 428 3 1721 273 71 17 chr11 137782329 137782698 -11000774 - L2 LINE L2 -380 2933 2493 265 296 10 51 chr11 137782675 137782773 -11000699 + L2 LINE L2 3215 3308 -5 * 208 219 0 0 chr11 137782906 137782947 -11000525 + L2 LINE L2 3232 3272 0 2387 106 0 0 chr11 137783497 137783798 -10999674 + AluSx SINE Alu 1 301 -11 210 336 86 43 chr11 137784767 137784907 -10998565 - L2 LINE L2 -1 3271 3126 190 341 99 28 chr11 137785628 137785810 -10997662 + L2 LINE L2 583 777 -2537 292 317 132 31 chr11 137786187 137786635 -10996837 + L2 LINE L2 2217 2709 -605 543 327 92 5 chr11 137786978 137787195 -10996277 - MIR SINE MIR -2 260 25 402 21 0 0 chr11 137787241 137787288 -10996184 + (TGGA)n Simple_repeat Simple_repeat 1 47 0 202 320 147 0 chr11 137787353 137787428 -10996044 + L2 LINE L2 3175 3260 -12 1700 229 29 55 chr11 137788949 137789438 -10994034 - L2 LINE L2 -689 2625 2150 194 233 17 0 chr11 137789885 137789945 -10993527 + (TG)n Simple_repeat Simple_repeat 2 62 0 200 247 219 0 chr11 137791265 137791338 -10992134 - L2 LINE L2 0 3272 3184 214 286 207 47 chr11 137791880 137792093 -10991379 + L3b LINE CR1 1322 1568 -15 233 375 0 0 chr11 137792415 137792487 -10990985 + L2 LINE L2 3201 3272 0 344 319 108 34 chr11 137793281 137793510 -10989962 - MIR SINE MIR -15 247 17 479 305 96 5 chr11 137794011 137794198 -10989274 - MIR SINE MIR 0 262 59 276 301 63 43 chr11 137794500 137794669 -10988803 - MIR SINE MIR -62 146 5 1955 181 38 25 chr11 137796520 137796911 -10986561 - MSTB1 LTR MaLR -2 430 67 1042 119 19 0 chr11 137796911 137797070 -10986402 - L1PA8A LINE L1 0 6131 5970 1955 181 38 25 chr11 137797070 137797138 -10986334 - MSTB1 LTR MaLR -365 67 1 2050 122 34 10 chr11 137797168 137797464 -10986008 - AluSx SINE Alu -9 303 1 180 0 0 0 chr11 137797588 137797608 -10985864 + (GA)n Simple_repeat Simple_repeat 1 20 0 828 25 0 34 chr11 137797621 137797739 -10985733 + (GGAA)n Simple_repeat Simple_repeat 3 116 0 532 31 0 62 chr11 137798086 137798182 -10985290 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 180 0 0 0 chr11 137798195 137798215 -10985257 + (TC)n Simple_repeat Simple_repeat 1 20 0 964 177 39 6 chr11 137798979 137799160 -10984312 + MER5A DNA MER1_type 3 189 0 398 242 187 40 chr11 137799300 137799498 -10983974 + MIR SINE MIR 35 261 -1 469 328 15 44 chr11 137799807 137800011 -10983461 + MIR SINE MIR 38 235 -27 324 0 0 0 chr11 137800011 137800047 -10983425 + (TGAA)n Simple_repeat Simple_repeat 2 37 0 343 287 63 7 chr11 137801168 137801311 -10982161 - LTR33 LTR ERVL 0 521 371 622 277 84 16 chr11 137801380 137801629 -10981843 - LTR33 LTR ERVL -252 269 4 223 325 152 25 chr11 137802433 137802630 -10980842 + L3b LINE CR1 1216 1437 -146 188 182 0 0 chr11 137802682 137802715 -10980757 - L2 LINE L2 -10 3303 3271 210 143 0 0 chr11 137804078 137804113 -10979359 + (CA)n Simple_repeat Simple_repeat 1 35 0 2199 84 28 50 chr11 137804142 137804462 -10979010 - AluSq SINE Alu 0 313 1 354 345 26 31 chr11 137805308 137805499 -10977973 - L2 LINE L2 -177 3095 2906 247 303 37 18 chr11 137805866 137805975 -10977497 + MIR3 SINE MIR 6 116 -92 225 0 0 0 chr11 137806811 137806836 -10976636 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 842 252 74 13 chr11 137808133 137808363 -10975109 + MIR SINE MIR 14 257 -5 1391 104 0 0 chr11 137808459 137808641 -10974831 - AluSq SINE Alu -6 307 126 394 288 156 43 chr11 137810766 137811023 -10972449 + L3 LINE CR1 1022 1307 -270 1528 207 53 77 chr11 137811053 137811583 -10971889 - LTR26B LTR ERV1 -12 610 1 1028 291 88 20 chr11 137811654 137812267 -10971205 + L2 LINE L2 2657 3313 0 675 125 0 67 chr11 137812403 137812449 -10971023 - MSTA LTR MaLR 0 428 380 2147 125 0 23 chr11 137812449 137812753 -10970719 + AluSx SINE Alu 11 307 -5 675 125 0 67 chr11 137812753 137812826 -10970646 - MSTA LTR MaLR -48 380 317 273 156 0 0 chr11 137812883 137812928 -10970544 + MSTA LTR MaLR 87 131 -297 1745 126 14 17 chr11 137812966 137813259 -10970213 - MSTA LTR MaLR -135 293 2 899 283 13 9 chr11 137813317 137813547 -10969925 + MIR SINE MIR 20 250 -12 1742 199 0 0 chr11 137814233 137814534 -10968938 + AluJo SINE Alu 1 301 -11 302 327 30 0 chr11 137814535 137814636 -10968836 + MIR SINE MIR 109 212 -50 227 167 0 0 chr11 137815584 137815620 -10967852 - L3 LINE CR1 -96 1481 1446 637 286 61 26 chr11 137815631 137815862 -10967610 + MIR SINE MIR 9 247 -15 299 221 88 0 chr11 137815874 137815942 -10967530 - L2 LINE L2 -11 3261 3188 659 236 35 15 chr11 137816015 137816218 -10967254 - L3 LINE CR1 -178 1399 1193 613 236 22 60 chr11 137816569 137816751 -10966721 - MER5B DNA MER1_type 0 178 4 507 271 33 20 chr11 137816753 137816904 -10966568 - MIR3 SINE MIR -47 161 9 2731 176 65 4 chr11 137818100 137818658 -10964814 + L1MB7 LINE L1 5571 6162 -22 372 248 78 31 chr11 137818957 137819086 -10964386 - L2 LINE L2 -14 3299 3165 483 311 89 13 chr11 137819900 137820125 -10963347 - MIR SINE MIR -9 253 12 1999 142 0 3 chr11 137820788 137821070 -10962402 + AluSx SINE Alu 14 294 -18 722 268 59 29 chr11 137821070 137821309 -10962163 + MIR SINE MIR 17 262 0 514 208 168 7 chr11 137821361 137821510 -10961962 + MER5B DNA MER1_type 2 174 -4 216 97 0 0 chr11 137822606 137822637 -10960835 + (GGGGA)n Simple_repeat Simple_repeat 1 31 0 725 242 143 9 chr11 137824691 137824922 -10958550 - MIR SINE MIR 0 262 1 22 35 0 0 chr11 137824928 137824957 -10958515 + AT_rich Low_complexity Low_complexity 1 29 0 556 284 92 14 chr11 137824971 137825189 -10958283 - MIR SINE MIR -18 244 10 180 340 37 56 chr11 137826186 137826348 -10957124 - MIR SINE MIR -56 206 48 341 333 111 0 chr11 137826640 137826775 -10956697 + MIR SINE MIR 113 262 0 242 343 81 0 chr11 137826985 137827084 -10956388 + L2 LINE L2 3165 3271 -1 294 148 0 0 chr11 137827084 137827138 -10956334 + (GGAA)n Simple_repeat Simple_repeat 4 57 0 575 226 113 0 chr11 137828588 137828721 -10954751 + MIR SINE MIR 59 206 -56 1891 239 71 44 chr11 137830718 137831267 -10952205 - MLT1E LTR MaLR -3 590 27 410 263 10 0 chr11 137832337 137832436 -10951036 - MIR SINE MIR -109 153 54 431 258 87 93 chr11 137832438 137832885 -10950587 - MLT1J LTR MaLR 0 511 1 429 210 50 0 chr11 137834700 137834800 -10948672 + MIR SINE MIR 42 146 -62 318 300 50 0 chr11 137834855 137834935 -10948537 - L2 LINE L2 -3 3310 3227 366 242 49 29 chr11 137835471 137835650 -10947822 + MIR SINE MIR 33 214 -48 195 284 63 42 chr11 137836640 137836735 -10946737 - MIR SINE MIR -96 112 16 272 257 151 59 chr11 137838674 137838826 -10944646 + MIR SINE MIR 20 185 -77 236 379 0 0 chr11 137838942 137839029 -10944443 + MIR SINE MIR 164 250 -12 287 311 152 24 chr11 137839286 137839450 -10944022 + MIR SINE MIR 65 249 -13 185 280 0 0 chr11 137839637 137839687 -10943785 + MIR SINE MIR 84 133 -129 2028 119 0 11 chr11 137839941 137840226 -10943246 - AluJb SINE Alu -30 282 1 666 289 89 8 chr11 137840784 137841019 -10942453 + L3 LINE CR1 931 1184 -393 258 353 29 22 chr11 137841482 137841621 -10941851 + MIR3 SINE MIR 8 147 -61 599 256 26 70 chr11 137842338 137842568 -10940904 - L2 LINE L2 0 3313 3094 492 250 38 57 chr11 137842763 137842975 -10940497 - MIR SINE MIR -40 222 15 496 256 40 2 chr11 137842997 137843163 -10940309 - MIR SINE MIR -63 145 20 657 284 85 66 chr11 137843769 137844206 -10939266 + L2 LINE L2 2824 3268 -4 333 329 65 35 chr11 137844497 137844667 -10938805 + MIR SINE MIR 17 191 -71 2064 121 16 26 chr11 137845630 137845943 -10937529 + AluSq SINE Alu 1 310 -3 2565 54 0 13 chr11 137845945 137846260 -10937212 + AluY SINE Alu 1 311 0 723 315 46 4 chr11 137847396 137847634 -10935838 - MIR SINE MIR -12 250 3 306 223 85 53 chr11 137848188 137848282 -10935190 + MIR SINE MIR 64 160 -102 217 338 0 0 chr11 137848960 137849031 -10934441 - MIR SINE MIR -60 148 78 349 299 82 8 chr11 137849074 137849208 -10934264 + MIR SINE MIR 20 163 -99 932 160 22 39 chr11 137849409 137849640 -10933832 + L1MA8 LINE L1 6065 6291 0 2247 110 3 0 chr11 137849664 137849954 -10933518 + AluSx SINE Alu 1 291 -21 261 375 54 6 chr11 137850945 137851020 -10932452 - L2 LINE L2 -9 3263 3193 2491 75 0 0 chr11 137851020 137851314 -10932158 + AluY SINE Alu 1 294 -17 261 375 54 6 chr11 137851314 137851406 -10932066 - L2 LINE L2 -79 3193 3088 299 311 146 23 chr11 137852084 137852321 -10931151 + MIR SINE MIR 10 259 -3 753 317 80 31 chr11 137852948 137853298 -10930174 + L3 LINE CR1 1200 1566 -11 2155 105 0 54 chr11 137853388 137853703 -10929769 - AluSx SINE Alu -14 298 1 245 326 91 8 chr11 137854175 137854307 -10929165 + MIR SINE MIR 106 248 -14 253 271 0 0 chr11 137854573 137854632 -10928840 - MIR SINE MIR -120 142 84 248 319 77 11 chr11 137854687 137854778 -10928694 + L2 LINE L2 3191 3287 -26 287 0 53 0 chr11 137854780 137854818 -10928654 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 242 269 0 30 chr11 137855084 137855151 -10928321 - L2 LINE L2 -13 3259 3195 22 0 0 0 chr11 137855601 137855623 -10927849 + AT_rich Low_complexity Low_complexity 1 22 0 259 244 12 58 chr11 137856888 137856974 -10926498 + MIR SINE MIR 49 130 -132 184 89 22 44 chr11 137857452 137857497 -10925975 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 443 282 69 9 chr11 137858660 137858802 -10924670 + MIR SINE MIR 1 153 -85 698 293 5 0 chr11 137859476 137859667 -10923805 + MIR SINE MIR 71 262 0 266 338 41 35 chr11 137860103 137860248 -10923224 + MIR SINE MIR 64 209 -53 205 352 0 0 chr11 137862255 137862326 -10921146 + MIR SINE MIR 71 141 -67 417 274 89 50 chr11 137862365 137862544 -10920928 - MIR SINE MIR -13 249 64 446 355 96 7 chr11 137862794 137863087 -10920385 + L2 LINE L2 2582 2900 -414 1483 175 51 87 chr11 137863662 137864051 -10919421 - MLT1B LTR MaLR 0 390 16 251 291 36 91 chr11 137864178 137864343 -10919129 + MIR3 SINE MIR 37 169 -39 359 289 41 8 chr11 137864701 137864822 -10918650 - L2 LINE L2 -1 3271 3147 211 307 20 59 chr11 137867194 137867295 -10916177 + MIR SINE MIR 88 184 -78 519 256 130 40 chr11 137867916 137868139 -10915333 + MIR SINE MIR 15 257 -5 192 77 0 0 chr11 137870869 137870895 -10912577 + (TG)n Simple_repeat Simple_repeat 2 27 0 237 206 7 192 chr11 137871081 137871185 -10912287 - L2 LINE L2 0 3272 3201 2107 114 0 42 chr11 137871185 137871491 -10911981 + AluSx SINE Alu 1 293 -19 237 206 7 192 chr11 137871491 137871532 -10911940 - L2 LINE L2 -71 3201 3154 336 277 77 69 chr11 137871541 137871815 -10911657 + L2 LINE L2 3014 3289 -24 305 299 7 0 chr11 137872213 137872357 -10911115 + (CA)n Simple_repeat Simple_repeat 2 146 0 252 275 127 14 chr11 137872539 137872681 -10910791 - MIR3 SINE MIR -18 190 33 231 284 42 32 chr11 137873622 137873717 -10909755 + MIR3 SINE MIR 81 176 -32 1530 212 42 0 chr11 137874521 137874809 -10908663 - AluJo SINE Alu -12 300 1 900 252 92 61 chr11 137874824 137875126 -10908346 + L2 LINE L2 2470 2761 -511 2374 94 0 3 chr11 137875126 137875423 -10908049 + AluSx SINE Alu 1 296 -16 900 252 92 61 chr11 137875423 137875700 -10907772 + L2 LINE L2 2761 3054 -218 257 307 0 13 chr11 137875869 137875944 -10907528 - LTR28 LTR ERV1 -42 978 905 843 273 148 22 chr11 137876045 137876451 -10907021 - LTR1B LTR ERV1 -328 498 42 182 266 78 0 chr11 137876497 137876561 -10906911 + L2 LINE L2 3184 3252 -20 187 315 0 0 chr11 137876666 137876720 -10906752 - MIR SINE MIR -73 135 82 8144 164 43 16 chr11 137876771 137878293 -10905179 + MER21A-int LTR ERV1 1913 3475 -716 2546 73 3 9 chr11 137878305 137878620 -10904852 + AluSq SINE Alu 1 313 0 234 0 0 0 chr11 137878988 137879014 -10904458 + (A)n Simple_repeat Simple_repeat 1 26 0 3474 173 19 42 chr11 137879014 137879625 -10903847 + MER21A-int LTR ERV1 3470 4063 -128 2394 82 17 0 chr11 137879625 137879918 -10903554 + AluSx SINE Alu 1 298 -14 3474 173 19 42 chr11 137879918 137880045 -10903427 + MER21A-int LTR ERV1 4063 4191 0 2589 150 91 16 chr11 137880099 137880828 -10902644 + MER21A LTR ERV1 23 928 -3 2066 92 0 27 chr11 137880895 137881189 -10902283 - AluSq SINE Alu -10 303 18 228 271 34 0 chr11 137881283 137881342 -10902130 - L3 LINE CR1 -6 1571 1511 327 247 201 32 chr11 137881381 137881535 -10901937 - L2 LINE L2 -2 3270 3091 225 278 0 0 chr11 137881661 137881715 -10901757 - L3 LINE CR1 -108 1469 1416 931 327 65 10 chr11 137882866 137883267 -10900205 - LTR16C LTR ERVL 0 491 69 334 340 47 7 chr11 137883551 137883701 -10899771 - MIR SINE MIR -72 190 35 373 352 19 0 chr11 137884172 137884331 -10899141 + MER103 DNA DNA 4 165 -1 223 167 0 21 chr11 137884390 137884438 -10899034 + MIR SINE MIR 53 99 -109 195 331 50 65 chr11 137884611 137884750 -10898722 + MIR SINE MIR 53 145 -63 370 282 84 8 chr11 137885200 137885331 -10898141 + MIR3 SINE MIR 33 173 -35 233 231 0 0 chr11 137885393 137885445 -10898027 - L2 LINE L2 0 3313 3262 599 290 24 27 chr11 137885455 137885672 -10897800 - MIR SINE MIR -15 247 34 338 0 24 0 chr11 137885918 137885960 -10897512 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 796 97 18 0 chr11 137885968 137886081 -10897391 - FLAM_C SINE Alu -27 116 2 364 264 179 21 chr11 137888048 137888188 -10895284 + MIR SINE MIR 20 181 -81 526 291 28 11 chr11 137889822 137890004 -10893468 + MER5A DNA MER1_type 1 185 -4 290 210 74 25 chr11 137890241 137890322 -10893150 - MIR SINE MIR -120 142 58 243 368 0 0 chr11 137890663 137890750 -10892722 - MIR SINE MIR -78 130 44 187 356 14 0 chr11 137891708 137891781 -10891691 + MIR SINE MIR 186 259 -3 312 321 236 12 chr11 137891781 137892260 -10891212 + L2 LINE L2 2254 2839 -475 470 293 92 11 chr11 137892349 137892523 -10890949 - MIR SINE MIR -37 225 38 514 276 100 0 chr11 137893791 137893961 -10889511 - MIR SINE MIR -56 206 20 1893 144 20 7 chr11 137894624 137894922 -10888550 + AluSx SINE Alu 1 302 -10 237 33 0 0 chr11 137895280 137895310 -10888162 + (CA)n Simple_repeat Simple_repeat 2 31 0 759 105 0 0 chr11 137895442 137895547 -10887925 - AluSg/x SINE Alu -19 291 187 2146 102 0 0 chr11 137895569 137895862 -10887610 - AluSx SINE Alu -19 293 1 231 125 0 0 chr11 137895954 137895994 -10887478 + (CA)n Simple_repeat Simple_repeat 2 41 0 403 274 258 5 chr11 137897692 137897882 -10885590 - MIR SINE MIR -19 243 6 304 259 236 23 chr11 137898278 137898452 -10885020 + MIR SINE MIR 31 241 -21 879 149 0 0 chr11 137898462 137898596 -10884876 + AluJo SINE Alu 1 134 -178 33 85 0 0 chr11 137898626 137898708 -10884764 + AT_rich Low_complexity Low_complexity 1 82 0 2083 113 0 0 chr11 137898890 137899212 -10884260 + AluSq SINE Alu 1 322 0 270 307 117 22 chr11 137899296 137899433 -10884039 + MIR SINE MIR 6 155 -107 211 231 0 19 chr11 137899813 137899865 -10883607 + L2 LINE L2 3262 3312 -1 2106 106 13 0 chr11 137900437 137900739 -10882733 + AluSg SINE Alu 1 306 -4 196 282 107 10 chr11 137900947 137901050 -10882422 + L2 LINE L2 3155 3267 -5 2059 128 3 0 chr11 137901177 137901473 -10881999 + AluSx SINE Alu 1 297 -15 588 106 0 0 chr11 137901941 137902026 -10881446 - AluSg/x SINE Alu -11 298 214 208 168 42 25 chr11 137902728 137902847 -10880625 + CT-rich Low_complexity Low_complexity 4 124 0 411 240 20 4 chr11 137903417 137903544 -10879928 + MIR SINE MIR 20 146 -62 329 269 39 58 chr11 137903737 137903893 -10879579 + MIR SINE MIR 1 153 -109 525 189 21 56 chr11 137903985 137904128 -10879344 + MIR SINE MIR 104 241 -21 704 254 68 68 chr11 137907261 137907509 -10875963 - MIR SINE MIR -6 256 9 855 267 82 23 chr11 137908260 137908563 -10874909 - L3 LINE CR1 -24 1553 1233 188 100 25 0 chr11 137909311 137909351 -10874121 + (TC)n Simple_repeat Simple_repeat 2 42 0 1808 164 3 0 chr11 137909522 137909808 -10873664 + AluJo SINE Alu 1 287 -25 495 0 0 0 chr11 137909834 137909889 -10873583 + (CA)n Simple_repeat Simple_repeat 2 56 0 258 308 47 23 chr11 137912118 137912249 -10871223 - MIR3 SINE MIR -67 141 11 384 263 35 35 chr11 137913685 137913799 -10869673 + MIR3 SINE MIR 57 170 -38 236 204 22 66 chr11 137914151 137914252 -10869220 + MIR SINE MIR 14 107 -102 228 254 28 14 chr11 137914315 137914386 -10869086 + MIR SINE MIR 117 188 -74 459 35 0 0 chr11 137914388 137914445 -10869027 + (TC)n Simple_repeat Simple_repeat 1 57 0 1767 118 90 0 chr11 137914472 137914751 -10868721 - AluSx SINE Alu -5 307 4 576 269 4 96 chr11 137914947 137915207 -10868265 - L2 LINE L2 -4 3309 3074 187 365 37 0 chr11 137915579 137915686 -10867786 - MIR SINE MIR -76 132 22 438 251 115 109 chr11 137915925 137916105 -10867367 + L2 LINE L2 2924 3108 -164 1726 131 0 88 chr11 137916105 137916425 -10867047 - AluJb SINE Alu -20 292 1 438 251 115 109 chr11 137916425 137916575 -10866897 + L2 LINE L2 3108 3256 -16 534 16 0 0 chr11 137916688 137916751 -10866721 + (TTGTG)n Simple_repeat Simple_repeat 3 65 0 871 258 9 26 chr11 137916756 137916989 -10866483 + MIR SINE MIR 9 237 -25 1148 122 0 0 chr11 137920223 137920387 -10863085 - AluSx SINE Alu -12 300 137 261 0 0 0 chr11 137920488 137920517 -10862955 + (CA)n Simple_repeat Simple_repeat 2 30 0 571 192 24 32 chr11 137920968 137921093 -10862379 + FLAM_C SINE Alu 1 124 -19 450 0 0 0 chr11 137921093 137921143 -10862329 + (GGAA)n Simple_repeat Simple_repeat 3 52 0 282 191 0 0 chr11 137921199 137921246 -10862226 + L3 LINE CR1 1426 1472 -105 2130 91 32 19 chr11 137921543 137921851 -10861621 - AluSx SINE Alu 0 312 1 818 76 0 76 chr11 137921852 137922009 -10861463 - AluSx SINE Alu -168 145 1 435 301 77 6 chr11 137922031 137922187 -10861285 - MIR SINE MIR -50 212 46 394 291 71 0 chr11 137923919 137924060 -10859412 + MER5B DNA MER1_type 1 151 -27 2122 91 32 19 chr11 137924537 137924872 -10858600 - AluSx SINE Alu 0 339 1 506 329 42 5 chr11 137925698 137925914 -10857558 - MIR SINE MIR -19 243 20 610 289 75 39 chr11 137926916 137927196 -10856276 - L2 LINE L2 -1 3312 3023 1941 208 60 2 chr11 137927214 137927284 -10856188 - L1MB7 LINE L1 -9 6175 6106 1950 205 64 77 chr11 137927284 137927661 -10855811 - L1MD3 LINE L1 -744 5402 5022 852 173 0 0 chr11 137927661 137927794 -10855678 + AluSq/x SINE Alu 1 133 -179 1950 205 64 77 chr11 137927794 137929002 -10854470 - L1MD3 LINE L1 -1124 5022 4258 2107 112 0 14 chr11 137929002 137929298 -10854174 - AluSq SINE Alu -21 292 1 1950 205 64 77 chr11 137929298 137930098 -10853374 - L1MD3 LINE L1 -1888 4258 3449 664 280 16 18 chr11 137930186 137930443 -10853029 - L2 LINE L2 -559 2755 2437 500 158 53 35 chr11 137930583 137930697 -10852775 - MLT1A1 LTR MaLR 0 374 259 441 214 0 0 chr11 137930700 137930803 -10852669 + GA-rich Low_complexity Low_complexity 1 103 0 516 193 26 104 chr11 137930804 137930996 -10852476 - MLT1A1 LTR MaLR -188 177 1 309 317 58 0 chr11 137930996 137931100 -10852372 - MIR SINE MIR -57 151 42 245 324 106 34 chr11 137932481 137932660 -10850812 + Charlie8 DNA MER1_type 68 259 -2158 274 313 0 0 chr11 137932990 137933054 -10850418 + MIR SINE MIR 20 83 -179 2234 118 0 3 chr11 137933816 137934129 -10849343 - AluSx SINE Alu 0 312 1 497 130 10 40 chr11 137934265 137934365 -10849107 - MER3 DNA MER1_type -19 190 94 341 285 49 35 chr11 137934558 137934702 -10848770 - L2 LINE L2 0 3313 3168 1839 123 49 0 chr11 137935419 137935703 -10847769 - AluSx SINE Alu -14 298 1 412 203 0 0 chr11 137936485 137936559 -10846913 + MIR SINE MIR 73 146 -116 183 400 43 9 chr11 137936628 137936743 -10846729 + L2 LINE L2 3136 3254 -18 276 91 0 0 chr11 137937253 137937297 -10846175 + (TC)n Simple_repeat Simple_repeat 1 44 0 * 294 233 0 0 chr11 137937296 137937476 -10845996 + (CA)n Simple_repeat Simple_repeat 1 180 0 531 274 18 73 chr11 137938108 137938330 -10845142 + MIR SINE MIR 17 224 -38 550 208 18 38 chr11 137938391 137938556 -10844916 - MLT1F LTR MaLR -5 537 413 537 270 116 16 chr11 137938572 137938761 -10844711 - L2 LINE L2 -702 2612 2405 773 234 47 43 chr11 137939947 137940246 -10843226 - MER96B DNA MER1_type? -23 394 95 744 192 11 28 chr11 137940475 137940657 -10842815 + MER96B DNA MER1_type? 239 417 0 189 0 0 0 chr11 137940911 137940932 -10842540 + (T)n Simple_repeat Simple_repeat 1 21 0 2550 62 0 0 chr11 137941101 137941410 -10842062 - AluY SINE Alu -2 309 1 1121 67 0 0 chr11 137941410 137941544 -10841928 - AluY SINE Alu -177 134 1 319 234 106 11 chr11 137942532 137942626 -10840846 - L3b LINE CR1 -203 1380 1278 2295 104 0 0 chr11 137942784 137943093 -10840379 + AluSx SINE Alu 3 311 -1 254 322 54 3 chr11 137943556 137943684 -10839788 - MIR SINE MIR -63 145 32 300 360 112 6 chr11 137944056 137944234 -10839238 - MIR SINE MIR -19 243 47 288 0 0 0 chr11 137944553 137944585 -10838887 + (CA)n Simple_repeat Simple_repeat 1 32 0 204 316 53 11 chr11 137945446 137945541 -10837931 - L2 LINE L2 -19 3294 3196 383 227 113 0 chr11 137946345 137946442 -10837030 - MIR SINE MIR -70 192 85 261 367 54 15 chr11 137948012 137948142 -10835330 + MIR SINE MIR 30 163 -62 445 317 69 29 chr11 137949147 137949393 -10834079 - MIR SINE MIR -2 260 5 2104 111 3 16 chr11 137949667 137949973 -10833499 + AluSq SINE Alu 1 302 -11 376 159 377 7 chr11 137950096 137950234 -10833238 - MER53 DNA DNA 0 189 1 760 254 41 0 chr11 137950241 137950438 -10833034 + MIR SINE MIR 58 262 0 372 349 58 51 chr11 137950654 137950929 -10832543 - L2 LINE L2 -11 3261 2985 1629 244 45 18 chr11 137951334 137951780 -10831692 - MER39 LTR ERV1 0 707 250 248 211 0 35 chr11 137951872 137951929 -10831543 - MLT1G1 LTR MaLR -82 513 459 546 322 14 29 chr11 137952216 137952424 -10831048 - MIR SINE MIR -28 234 30 2347 101 0 0 chr11 137952448 137952754 -10830718 + AluSq SINE Alu 1 306 -7 362 344 159 46 chr11 137952819 137953575 -10829897 - L2 LINE L2 -467 2847 2007 596 228 120 38 chr11 137953583 137953767 -10829705 + L2 LINE L2 3100 3298 -15 548 303 42 0 chr11 137954224 137954389 -10829083 + MIR SINE MIR 21 192 -70 352 345 96 10 chr11 137954452 137954649 -10828823 - MIR SINE MIR -1 261 48 278 323 0 103 chr11 137954855 137955010 -10828462 - L2 LINE L2 -259 3054 2916 425 263 188 0 chr11 137955191 137955324 -10828148 - MER5A DNA MER1_type 0 189 32 317 360 0 0 chr11 137956002 137956091 -10827381 - L1MC4 LINE L1 -1339 6703 6615 336 302 0 9 chr11 137956104 137956221 -10827251 - L1MCa LINE L1 -1339 6983 1995 330 167 0 0 chr11 137956221 137956281 -10827191 + (CA)n Simple_repeat Simple_repeat 1 60 0 226 250 241 35 chr11 137956378 137956494 -10826978 - L2 LINE L2 -4 3309 3170 246 301 139 22 chr11 137956515 137956827 -10826645 - L2 LINE L2 -213 3059 2713 218 292 11 11 chr11 137958167 137958256 -10825216 + CT-rich Low_complexity Low_complexity 1 89 0 261 0 0 0 chr11 137958316 137958345 -10825127 + (TC)n Simple_repeat Simple_repeat 1 29 0 630 131 25 121 chr11 137958441 137958464 -10825008 - MER53 DNA DNA -7 182 158 1942 169 46 9 chr11 137958464 137958812 -10824660 + MLT1A1 LTR MaLR 5 365 0 630 131 25 121 chr11 137958812 137958987 -10824485 - MER53 DNA DNA -31 158 3 396 294 85 0 chr11 137958991 137959144 -10824328 + MER91A DNA MER1_type 1 166 -30 1793 181 132 79 chr11 137959181 137959618 -10823854 + MER74A LTR ERVL 2 474 -84 2103 91 0 40 chr11 137959618 137959973 -10823499 - AluSp SINE Alu 0 343 1 1793 181 132 79 chr11 137959973 137960063 -10823409 + MER74A LTR ERVL 474 558 0 330 341 71 16 chr11 137960121 137960303 -10823169 - MIR3 SINE MIR -10 198 7 370 196 215 0 chr11 137961056 137961163 -10822309 + MIR3 SINE MIR 35 164 -44 210 184 0 0 chr11 137961293 137961331 -10822141 + MIR SINE MIR 85 122 -86 529 286 198 5 chr11 137961832 137962024 -10821448 + MIR SINE MIR 25 253 -9 346 296 87 8 chr11 137962181 137962338 -10821134 + MIR SINE MIR 100 262 0 22 0 0 0 chr11 137963398 137963420 -10820052 + AT_rich Low_complexity Low_complexity 1 22 0 938 220 156 1 chr11 137966164 137966431 -10817041 - MLT1C LTR MaLR -4 463 178 216 204 23 0 chr11 137966431 137966475 -10816997 + CT-rich Low_complexity Low_complexity 5 49 0 554 149 78 125 chr11 137966476 137966489 -10816983 - MLT1C LTR MaLR -285 182 170 1502 172 0 80 chr11 137966489 137966827 -10816645 - AluJo SINE Alu 0 312 2 554 149 78 125 chr11 137966827 137967021 -10816451 - MLT1C LTR MaLR -297 170 5 193 250 52 42 chr11 137967102 137967198 -10816274 + MIR SINE MIR 124 220 -42 459 237 72 48 chr11 137968347 137968370 -10815102 - MIR SINE MIR -56 206 185 2044 143 0 3 chr11 137968370 137968671 -10814801 - AluSx SINE Alu -12 300 1 459 237 72 48 chr11 137968671 137968834 -10814638 - MIR SINE MIR -77 185 10 674 274 103 5 chr11 137970524 137970747 -10812725 + MIR SINE MIR 2 246 -16 248 241 0 0 chr11 137970906 137970960 -10812512 + CT-rich Low_complexity Low_complexity 1 54 0 401 297 0 12 chr11 137973359 137973524 -10809948 + CT-rich Low_complexity Low_complexity 2 164 0 201 74 0 0 chr11 137973524 137973551 -10809921 + (CA)n Simple_repeat Simple_repeat 2 28 0 334 229 43 0 chr11 137973551 137973621 -10809851 - L1MCa LINE L1 -4358 2068 1996 900 181 0 0 chr11 137973628 137973867 -10809605 + (CA)n Simple_repeat Simple_repeat 1 239 0 210 91 0 0 chr11 137974995 137975028 -10808444 + (A)n Simple_repeat Simple_repeat 1 33 0 1616 51 4 60 chr11 137975373 137975608 -10807864 - AluY SINE Alu -89 222 1 242 343 59 0 chr11 137975651 137975753 -10807719 + L2 LINE L2 3159 3266 -6 532 392 42 11 chr11 137976077 137976337 -10807135 + L3b LINE CR1 1306 1573 -10 377 260 0 0 chr11 137976978 137977078 -10806394 + L1MC4 LINE L1 7928 8027 -15 569 228 0 22 chr11 137979616 137979800 -10803672 + (CA)n Simple_repeat Simple_repeat 1 180 0 222 208 0 0 chr11 137979819 137979872 -10803600 + (CA)n Simple_repeat Simple_repeat 2 54 0 575 226 0 11 chr11 137979887 137980068 -10803404 + (CA)n Simple_repeat Simple_repeat 2 180 0 615 263 2 0 chr11 137980085 137980965 -10802507 + (CA)n Simple_repeat Simple_repeat 1 882 0 420 289 0 0 chr11 137980999 137981179 -10802293 + (CA)n Simple_repeat Simple_repeat 1 180 0 205 289 224 59 chr11 137982465 137982523 -10800949 - MIR SINE MIR -43 219 172 984 224 161 42 chr11 137982523 137982853 -10800619 - MLT1A2 LTR MaLR -1 373 5 205 289 224 59 chr11 137982853 137982946 -10800526 - MIR SINE MIR -90 172 43 255 103 0 0 chr11 137983010 137983049 -10800423 + (T)n Simple_repeat Simple_repeat 1 39 0 2271 103 3 0 chr11 137983281 137983583 -10799889 - AluSp SINE Alu -10 303 1 354 335 18 18 chr11 137983721 137983885 -10799587 - MIR SINE MIR -94 168 5 1651 105 150 15 chr11 137984833 137985099 -10798373 - AluSx SINE Alu 0 302 1 24 0 0 0 chr11 137985239 137985263 -10798209 + AT_rich Low_complexity Low_complexity 1 24 0 410 65 16 0 chr11 137987094 137987156 -10796316 + (TG)n Simple_repeat Simple_repeat 2 64 0 1936 117 47 13 chr11 137987160 137987460 -10796012 - AluSg SINE Alu 0 310 1 269 286 36 0 chr11 137988729 137988813 -10794659 + L2 LINE L2 3186 3272 0 2032 133 3 16 chr11 137989600 137989916 -10793556 - AluSx SINE Alu 0 312 1 854 119 0 0 chr11 137989960 137990078 -10793394 + FLAM_C SINE Alu 16 133 -10 1652 125 12 8 chr11 137990097 137990345 -10793127 - AluSx SINE Alu -6 306 58 809 207 124 0 chr11 137990873 137991066 -10792406 + MER20 DNA MER1_type 1 217 -2 412 266 25 13 chr11 137991421 137991579 -10791893 + (TG)n Simple_repeat Simple_repeat 2 161 0 344 259 59 6 chr11 137991599 137991769 -10791703 + (TG)n Simple_repeat Simple_repeat 1 179 0 251 245 21 75 chr11 137991843 137992031 -10791441 + (TATG)n Simple_repeat Simple_repeat 2 179 0 * 360 256 45 23 chr11 137991900 137992076 -10791396 + (TG)n Simple_repeat Simple_repeat 1 180 0 351 279 28 28 chr11 137992156 137992335 -10791137 + (TG)n Simple_repeat Simple_repeat 1 179 0 201 340 58 0 chr11 137995502 137995605 -10787867 - MIR3 SINE MIR -16 192 84 2230 96 0 0 chr11 137996272 137996563 -10786909 + AluSx SINE Alu 4 294 -18 380 282 159 12 chr11 137996620 137996790 -10786682 - MIR SINE MIR -29 233 39 304 254 91 9 chr11 137996858 137996968 -10786504 + MIR3 SINE MIR 7 125 -83 221 254 0 73 chr11 137997594 137997704 -10785768 + C-rich Low_complexity Low_complexity 3 104 0 331 243 191 29 chr11 137998587 137998760 -10784712 + MIR3 SINE MIR 2 202 -6 367 335 52 13 chr11 137998771 137998926 -10784546 - L3 LINE CR1 -269 1308 1148 216 219 0 0 chr11 137998951 137998992 -10784480 + (TA)n Simple_repeat Simple_repeat 2 42 0 1874 137 0 0 chr11 137998995 137999280 -10784192 - AluSx SINE Alu -22 290 6 2161 97 3 13 chr11 137999293 137999593 -10783879 - AluSg SINE Alu -13 297 1 415 228 147 43 chr11 137999593 137999777 -10783695 + L3 LINE CR1 1374 1576 -1 2197 109 7 0 chr11 138000501 138000803 -10782669 + AluSx SINE Alu 1 304 -8 227 317 67 10 chr11 138001052 138001156 -10782316 + L2 LINE L2 2374 2483 -831 341 268 87 29 chr11 138001208 138001346 -10782126 + MIR SINE MIR 109 254 -8 188 293 107 0 chr11 138001376 138001451 -10782021 + L2 LINE L2 3185 3267 -5 598 380 60 27 chr11 138001453 138001935 -10781537 + L2 LINE L2 2465 2962 -352 182 282 26 77 chr11 138002112 138002190 -10781282 + L2 LINE L2 3201 3274 -39 231 191 0 103 chr11 138002920 138002988 -10780484 - L2 LINE L2 -4 3309 3249 369 0 0 0 chr11 138007110 138007151 -10776321 + (CA)n Simple_repeat Simple_repeat 2 42 0 395 301 130 0 chr11 138007645 138007791 -10775681 - MIR SINE MIR -49 213 49 321 26 0 0 chr11 138008495 138008533 -10774939 + (CA)n Simple_repeat Simple_repeat 2 39 0 22 56 0 0 chr11 138008660 138008696 -10774776 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr11 138009033 138009055 -10774417 + AT_rich Low_complexity Low_complexity 1 22 0 249 33 0 0 chr11 138009772 138009802 -10773670 + (T)n Simple_repeat Simple_repeat 1 30 0 256 245 10 61 chr11 138010103 138010201 -10773271 - MIR3 SINE MIR -101 107 15 720 157 76 35 chr11 138013099 138013271 -10770201 + MER3 DNA MER1_type 1 179 -30 940 193 0 28 chr11 138013271 138013447 -10770025 + FAM SINE Alu 1 171 -4 248 200 0 0 chr11 138013457 138013502 -10769970 + MER3 DNA MER1_type 165 209 0 511 241 5 113 chr11 138013555 138013750 -10769722 - MIR SINE MIR 0 262 89 871 88 0 0 chr11 138013858 138013971 -10769501 - AluJb SINE Alu -187 125 13 1538 239 102 29 chr11 138014512 138015105 -10768367 + MLT1E2 LTR MaLR 7 626 0 1968 118 31 3 chr11 138015105 138015393 -10768079 + AluSx SINE Alu 1 296 -16 278 370 100 17 chr11 138015940 138016170 -10767302 - MIR SINE MIR -10 252 4 1744 182 0 13 chr11 138016336 138016638 -10766834 + AluJo SINE Alu 1 298 -14 190 311 48 29 chr11 138021417 138021520 -10761952 - MER5B DNA MER1_type -49 129 25 493 294 56 11 chr11 138022004 138022184 -10761288 + L2 LINE L2 3122 3309 -4 258 324 221 0 chr11 138022284 138022420 -10761052 + MER5A DNA MER1_type 24 189 0 512 249 45 73 chr11 138022433 138022610 -10760862 - MER5B DNA MER1_type -6 172 1 545 229 21 96 chr11 138022907 138023095 -10760377 - MER5B DNA MER1_type -3 175 2 2012 140 13 0 chr11 138024059 138024367 -10759105 - AluSx SINE Alu 0 312 1 823 333 102 65 chr11 138024404 138024956 -10758516 + L2 LINE L2 1492 2022 -1292 1939 120 41 0 chr11 138024956 138025247 -10758225 - AluSx SINE Alu 0 312 10 823 333 102 65 chr11 138025247 138026012 -10757460 + L2 LINE L2 2022 2858 -456 2039 157 112 3 chr11 138026086 138026443 -10757029 + MSTD LTR MaLR 1 396 0 190 214 14 14 chr11 138026489 138026559 -10756913 + GA-rich Low_complexity Low_complexity 1 70 0 1315 244 24 24 chr11 138026574 138026935 -10756537 + MSTD-int LTR MaLR 175 538 -1197 2205 120 0 7 chr11 138026935 138027244 -10756228 + AluSx SINE Alu 1 307 -5 1315 244 24 24 chr11 138027244 138027264 -10756208 + MSTD-int LTR MaLR 537 556 -1179 3950 229 35 88 chr11 138027406 138028726 -10754746 + MSTD-int LTR MaLR 486 1735 0 2077 175 44 23 chr11 138028726 138029114 -10754358 + MSTD LTR MaLR 1 396 0 712 210 34 17 chr11 138029618 138029794 -10753678 - MER20 DNA MER1_type 0 219 41 475 320 76 0 chr11 138029805 138029977 -10753495 - MIR SINE MIR -32 230 46 200 330 171 0 chr11 138030262 138030350 -10753122 - L3 LINE CR1 -541 1036 934 185 339 126 43 chr11 138030451 138030681 -10752791 - L3 LINE CR1 -804 773 525 333 351 59 27 chr11 138030712 138030850 -10752622 + L2 LINE L2 2725 2857 -456 2002 154 45 28 chr11 138030850 138031208 -10752264 - THE1B LTR MaLR 0 364 1 333 351 59 27 chr11 138031208 138031413 -10752059 + L2 LINE L2 2857 3086 -227 386 272 0 19 chr11 138031418 138031521 -10751951 + L2 LINE L2 3213 3313 0 1827 160 27 0 chr11 138031999 138032299 -10751173 + AluJb SINE Alu 1 308 -4 974 163 53 93 chr11 138032688 138032988 -10750484 + MER33 DNA MER1_type 37 324 0 187 289 0 0 chr11 138032988 138033033 -10750439 + MIR3 SINE MIR 153 197 -11 246 348 61 55 chr11 138033041 138033205 -10750267 + MER5B DNA MER1_type 1 165 -13 1096 117 117 17 chr11 138033588 138033767 -10749705 + AluJo SINE Alu 108 304 -8 280 371 86 0 chr11 138033990 138034106 -10749366 + L2 LINE L2 3146 3271 -1 215 252 203 24 chr11 138034613 138034736 -10748736 + MIR SINE MIR 57 201 -61 426 39 0 0 chr11 138034736 138034788 -10748684 + (CA)n Simple_repeat Simple_repeat 2 53 0 2595 176 18 32 chr11 138035495 138036062 -10747410 + L1MB3 LINE L1 5616 6174 -9 324 330 111 20 chr11 138036080 138036529 -10746943 + L1ME3A LINE L1 5296 5875 -295 2344 69 0 39 chr11 138036530 138036836 -10746636 - AluY SINE Alu -17 294 1 1661 154 0 74 chr11 138036857 138037169 -10746303 + AluJo SINE Alu 17 305 -7 2393 83 0 19 chr11 138037654 138037966 -10745506 + AluSq SINE Alu 5 310 -3 252 0 0 0 chr11 138038047 138038075 -10745397 + (A)n Simple_repeat Simple_repeat 1 28 0 2507 96 0 0 chr11 138039085 138039398 -10744074 - AluSq SINE Alu 0 313 1 1984 125 26 26 chr11 138040662 138040975 -10742497 + AluSq SINE Alu 1 313 0 2288 94 13 7 chr11 138041234 138041541 -10741931 - AluSc SINE Alu 0 309 1 675 195 16 0 chr11 138043079 138043306 -10740166 + FLAM_A SINE Alu 4 232 0 189 0 0 0 chr11 138043375 138043396 -10740076 + (T)n Simple_repeat Simple_repeat 1 21 0 234 0 0 0 chr11 138043526 138043552 -10739920 + (TG)n Simple_repeat Simple_repeat 1 26 0 2065 75 4 4 chr11 138043584 138043849 -10739623 - AluSg SINE Alu -45 265 1 279 304 13 0 chr11 138043894 138043973 -10739499 + MIR SINE MIR 56 135 -127 2667 55 0 3 chr11 138044075 138044387 -10739085 - AluY SINE Alu 0 311 1 2187 130 20 0 chr11 138044459 138044751 -10738721 - AluSx SINE Alu -14 298 1 569 291 45 61 chr11 138044757 138044935 -10738537 - L2 LINE L2 -245 3068 2894 2208 113 0 0 chr11 138044935 138045217 -10738255 + AluSx SINE Alu 5 286 -26 569 291 45 61 chr11 138045217 138045285 -10738187 - L2 LINE L2 -419 2894 2826 1035 155 0 7 chr11 138045382 138045537 -10737935 + FRAM SINE Alu 7 160 -16 595 194 89 0 chr11 138045631 138045755 -10737717 - MER3 DNA MER1_type -74 135 1 2346 108 3 0 chr11 138045827 138046124 -10737348 + AluSx SINE Alu 6 303 -9 507 283 64 23 chr11 138046175 138046394 -10737078 + L1ME3 LINE L1 6 233 -5886 2377 104 0 7 chr11 138046524 138046833 -10736639 - AluSx SINE Alu -5 307 1 277 359 23 8 chr11 138046921 138047049 -10736423 + L1ME3 LINE L1 441 570 -5549 229 136 0 45 chr11 138047171 138047215 -10736257 + Alu SINE Alu 1 42 -261 * 355 114 14 0 chr11 138047184 138047250 -10736222 + Alu SINE Alu 239 287 -13 244 258 67 0 chr11 138047252 138047341 -10736131 + L1ME3 LINE L1 3495 3589 -2540 2241 108 24 0 chr11 138047351 138047648 -10735824 + AluY SINE Alu 1 304 -7 242 293 101 0 chr11 138047656 138047765 -10735707 + L1ME3 LINE L1 3994 4118 -2011 669 281 136 41 chr11 138047790 138047838 -10735634 + L1ME3 LINE L1 4182 4224 -1905 1677 166 7 18 chr11 138047838 138048116 -10735356 + AluJb SINE Alu 4 278 -34 669 281 136 41 chr11 138048116 138048920 -10734552 + L1ME3 LINE L1 4224 5115 -1014 2192 114 40 0 chr11 138048929 138049226 -10734246 + AluSq SINE Alu 1 309 -4 418 263 61 33 chr11 138049236 138049449 -10734023 + L1MC5 LINE L1 7713 7931 -30 * 552 299 104 17 chr11 138049447 138049640 -10733832 + L1ME3 LINE L1 5398 5573 -580 2455 95 0 7 chr11 138049640 138049944 -10733528 - AluSx SINE Alu -10 302 1 552 299 104 17 chr11 138049944 138050260 -10733212 + L1ME3 LINE L1 5573 5951 -202 235 302 23 54 chr11 138050309 138050438 -10733034 + L1ME3 LINE L1 5946 6070 -75 2370 101 0 3 chr11 138050471 138050769 -10732703 - AluSc SINE Alu -12 297 1 2234 109 0 10 chr11 138050769 138051063 -10732409 - AluSx SINE Alu -20 292 2 24 0 0 0 chr11 138051070 138051094 -10732378 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr11 138051116 138051138 -10732334 + AT_rich Low_complexity Low_complexity 1 22 0 492 262 131 29 chr11 138052537 138052743 -10730729 - MIR SINE MIR -31 231 5 2468 84 7 0 chr11 138053558 138053854 -10729618 - AluSg SINE Alu -11 299 2 539 292 153 0 chr11 138055614 138055830 -10727642 + MIR SINE MIR 13 261 -1 350 253 63 63 chr11 138055836 138056026 -10727446 + L1ME3 LINE L1 4487 4676 -1470 2296 103 7 3 chr11 138056302 138056603 -10726869 + AluSq SINE Alu 1 302 -11 29 60 0 0 chr11 138056965 138057015 -10726457 + AT_rich Low_complexity Low_complexity 1 50 0 860 106 73 0 chr11 138057703 138057826 -10725646 + AluSq/x SINE Alu 4 135 -177 2140 135 0 0 chr11 138057826 138058129 -10725343 + AluSx SINE Alu 1 303 -9 2483 83 0 3 chr11 138058261 138058561 -10724911 + AluSg SINE Alu 1 299 -11 1084 177 112 12 chr11 138058705 138059118 -10724354 + MLT1D LTR MaLR 1 505 0 2076 135 7 14 chr11 138059504 138059801 -10723671 - AluSx SINE Alu -17 295 1 1730 161 3 53 chr11 138059801 138060123 -10723349 - AluJo SINE Alu -6 306 1 549 279 30 12 chr11 138060151 138060316 -10723156 + L1ME3 LINE L1 5076 5243 -903 2283 96 14 0 chr11 138060319 138060610 -10722862 + AluSg SINE Alu 1 295 -15 212 143 24 0 chr11 138060610 138060652 -10722820 + (TA)n Simple_repeat Simple_repeat 1 43 0 1349 231 126 52 chr11 138060712 138061008 -10722464 + L1ME3 LINE L1 5318 5591 -571 2298 108 0 0 chr11 138061008 138061305 -10722167 - AluSg SINE Alu -13 297 1 1349 231 126 52 chr11 138061305 138061545 -10721927 + L1ME3 LINE L1 5591 5907 -255 2295 102 10 0 chr11 138061545 138061848 -10721624 + AluSq SINE Alu 1 306 -7 1349 231 126 52 chr11 138061848 138061919 -10721553 + L1ME3 LINE L1 5907 5971 -191 21 71 0 0 chr11 138062679 138062721 -10720751 + GC_rich Low_complexity Low_complexity 1 42 0 293 270 36 36 chr11 138063115 138063226 -10720246 - MIR SINE MIR -70 192 82 404 234 171 17 chr11 138063794 138063969 -10719503 + MIR SINE MIR 28 229 -33 476 169 0 0 chr11 138064136 138064213 -10719259 - U13 snRNA snRNA -27 77 1 2239 87 4 0 chr11 138064607 138064884 -10718588 - AluSp SINE Alu -15 298 21 2104 132 3 19 chr11 138065264 138065574 -10717898 - AluJb SINE Alu -4 308 4 390 291 233 23 chr11 138065664 138066344 -10717128 + L2 LINE L2 1867 2752 -562 1835 214 6 3 chr11 138066398 138066762 -10716710 + MLT1A1 LTR MaLR 1 365 0 287 273 39 39 chr11 138066781 138066909 -10716563 + L2 LINE L2 2919 3046 -226 223 324 63 9 chr11 138067039 138067150 -10716322 + L2 LINE L2 3196 3312 -1 2439 105 0 0 chr11 138068971 138069277 -10714195 - AluSq SINE Alu -7 306 1 202 230 11 23 chr11 138069523 138069610 -10713862 + (CACCC)n Simple_repeat Simple_repeat 1 86 0 180 0 0 0 chr11 138069613 138069633 -10713839 + (CA)n Simple_repeat Simple_repeat 2 21 0 247 333 65 5 chr11 138070536 138070811 -10712661 + L2 LINE L2 2725 3017 -296 2225 129 0 7 chr11 138070821 138071130 -10712342 - AluSx SINE Alu -5 307 1 365 282 0 19 chr11 138071212 138071315 -10712157 + L2 LINE L2 3213 3313 0 1595 186 34 35 chr11 138072290 138072585 -10710887 + L1MB3 LINE L1 5569 5822 -361 2369 103 6 0 chr11 138072585 138072896 -10710576 + AluSp SINE Alu 1 313 0 1595 186 34 35 chr11 138072896 138073222 -10710250 + L1MB3 LINE L1 5822 6147 -36 258 240 70 0 chr11 138073289 138073389 -10710083 + L1P5 LINE L1 5328 5434 -717 653 318 50 12 chr11 138073398 138073735 -10709737 + L1ME3A LINE L1 5526 5875 -295 2600 84 0 0 chr11 138073837 138074147 -10709325 + AluSg SINE Alu 1 310 0 24 67 0 0 chr11 138074300 138074345 -10709127 + AT_rich Low_complexity Low_complexity 1 45 0 2010 128 35 3 chr11 138074352 138074642 -10708830 + AluSx SINE Alu 1 299 -13 282 311 113 20 chr11 138074870 138075473 -10707999 + L1ME4a LINE L1 5307 5966 -155 2153 115 3 26 chr11 138075779 138076091 -10707381 + AluSq SINE Alu 7 311 -2 379 291 13 73 chr11 138076299 138076450 -10707022 + MER91A DNA MER1_type 47 188 -8 861 131 25 0 chr11 138076979 138077101 -10706371 - AluSq/x SINE Alu -188 125 1 394 256 118 47 chr11 138077133 138077158 -10706314 - MIR SINE MIR -32 230 208 2235 115 10 0 chr11 138077158 138077454 -10706018 - AluSx SINE Alu -13 299 1 394 256 118 47 chr11 138077454 138077639 -10705833 - MIR SINE MIR -54 208 5 195 279 44 0 chr11 138077651 138077719 -10705753 + MIR SINE MIR 118 188 -74 213 295 22 22 chr11 138080937 138081076 -10702396 + CT-rich Low_complexity Low_complexity 2 140 0 251 300 133 0 chr11 138082400 138082490 -10700982 + MIR3 SINE MIR 81 182 -26 251 209 116 23 chr11 138082536 138082622 -10700850 - MIR SINE MIR -99 163 70 2432 102 0 9 chr11 138082818 138083133 -10700339 + AluSx SINE Alu 1 312 0 2284 120 0 0 chr11 138083137 138083437 -10700035 + AluSx SINE Alu 1 300 -12 353 286 0 22 chr11 138084500 138084591 -10698881 - L2 LINE L2 -2 3311 3223 2285 93 7 0 chr11 138084596 138084906 -10698566 + AluSq SINE Alu 1 312 -1 518 173 0 0 chr11 138084906 138084987 -10698485 + AluJb SINE Alu 85 165 -147 285 98 0 0 chr11 138085552 138085593 -10697879 + (GGGA)n Simple_repeat Simple_repeat 1 41 0 311 276 19 48 chr11 138085692 138085797 -10697675 + MIR SINE MIR 44 145 -63 535 269 137 0 chr11 138085829 138086004 -10697468 + MIR SINE MIR 20 218 -44 272 267 13 0 chr11 138088285 138088360 -10695112 - MIR SINE MIR -3 259 184 189 0 0 0 chr11 138089423 138089444 -10694028 + (CCCCG)n Simple_repeat Simple_repeat 1 21 0 2289 52 0 0 chr11 138090872 138091180 -10692292 - AluSc SINE Alu 0 320 13 215 213 163 0 chr11 138091180 138091260 -10692212 - L2 LINE L2 -9 3304 3212 207 345 60 0 chr11 138091285 138091369 -10692103 - MIR SINE MIR -57 151 63 197 214 0 24 chr11 138091503 138091545 -10691927 + MIR SINE MIR 43 83 -125 216 158 0 0 chr11 138091943 138091981 -10691491 + CT-rich Low_complexity Low_complexity 1 38 0 327 335 110 19 chr11 138091982 138092245 -10691227 - HAL1 LINE L1 -1313 1194 908 2084 110 10 0 chr11 138092987 138093286 -10690186 + AluSx SINE Alu 1 302 -10 1494 160 117 19 chr11 138093349 138093674 -10689798 - MLT1A1 LTR MaLR -8 357 1 272 243 343 0 chr11 138093727 138093867 -10689605 - MIR SINE MIR -10 252 65 2104 132 71 32 chr11 138094120 138094317 -10689155 + L1MA8 LINE L1 5890 6078 -213 1943 114 35 7 chr11 138094317 138094606 -10688866 + AluSx SINE Alu 1 297 -15 2104 132 71 32 chr11 138094606 138094788 -10688684 + L1MA8 LINE L1 6078 6284 -7 337 252 72 9 chr11 138095934 138096045 -10687427 - L2 LINE L2 -2 3311 3194 301 365 35 0 chr11 138096174 138096289 -10687183 - L2 LINE L2 -38 3234 3116 2317 83 7 0 chr11 138097452 138097754 -10685718 + AluSx SINE Alu 1 304 -8 1189 129 59 5 chr11 138097871 138098073 -10685399 - AluSg/x SINE Alu -4 308 96 270 250 20 80 chr11 138100926 138101026 -10682446 - MIR SINE MIR -80 128 35 2260 66 35 0 chr11 138101888 138102176 -10681296 - AluSg SINE Alu -11 299 2 215 255 59 0 chr11 138104144 138104195 -10679277 + L2 LINE L2 3218 3271 -1 1149 128 0 12 chr11 138104479 138104651 -10678821 + AluSg/x SINE Alu 129 298 -14 215 302 81 0 chr11 138108502 138108588 -10674884 + MIR SINE MIR 127 219 -43 1350 92 49 0 chr11 138108840 138109025 -10674447 - AluSg/x SINE Alu -10 300 107 1973 113 40 7 chr11 138109026 138109327 -10674145 - AluSq SINE Alu 0 313 3 180 261 0 22 chr11 138109329 138109375 -10674097 - MIR SINE MIR -112 150 106 279 339 63 8 chr11 138109925 138110052 -10673420 - MIR SINE MIR -26 236 103 296 195 6 127 chr11 138110234 138110332 -10673140 + MIR SINE MIR 6 114 -148 2147 105 0 0 chr11 138110332 138110648 -10672824 + AluSq SINE Alu 1 316 0 296 195 6 127 chr11 138110648 138110713 -10672759 + MIR SINE MIR 114 249 -13 265 350 28 14 chr11 138111059 138111083 -10672389 - MER5B DNA MER1_type -33 145 123 279 0 0 0 chr11 138111083 138111114 -10672358 + (GA)n Simple_repeat Simple_repeat 2 32 0 265 350 28 14 chr11 138111114 138111232 -10672240 - MER5B DNA MER1_type -55 123 1 368 329 139 52 chr11 138111316 138111684 -10671788 + L2 LINE L2 2870 3269 -3 1172 136 0 6 chr11 138111837 138112013 -10671459 + AluSq SINE Alu 1 175 -138 180 0 0 0 chr11 138112194 138112214 -10671258 + (CAA)n Simple_repeat Simple_repeat 2 21 0 443 322 22 63 chr11 138113101 138113371 -10670101 + L2 LINE L2 3042 3300 -13 2415 77 3 0 chr11 138113944 138114254 -10669218 + AluSp SINE Alu 1 311 -2 234 0 0 0 chr11 138114254 138114280 -10669192 + (TA)n Simple_repeat Simple_repeat 2 27 0 872 216 34 93 chr11 138114318 138114586 -10668886 + MIR SINE MIR 2 253 -9 1199 151 42 19 chr11 138114598 138114810 -10668662 - MER20 DNA MER1_type 0 219 3 189 396 11 0 chr11 138115245 138115336 -10668136 - MIR SINE MIR -151 111 20 420 263 112 0 chr11 138115462 138115614 -10667858 + MIR SINE MIR 8 176 -86 870 254 12 25 chr11 138115916 138116160 -10667312 + MIR SINE MIR 2 242 -20 493 309 143 21 chr11 138116764 138117197 -10666275 + L2 LINE L2 2828 3313 0 1355 257 116 26 chr11 138117388 138117933 -10665539 + L1MC4 LINE L1 7199 7792 -250 419 192 64 32 chr11 138117963 138118019 -10665453 + L1MC4 LINE L1 7903 7956 -86 2591 48 0 0 chr11 138118019 138118330 -10665142 - AluY SINE Alu 0 311 1 419 192 64 32 chr11 138118330 138118398 -10665074 + L1MC4 LINE L1 7956 8031 -11 442 216 80 57 chr11 138118454 138118630 -10664842 - MIR SINE MIR -41 221 42 2175 114 0 0 chr11 138118828 138119134 -10664338 - AluSc SINE Alu -3 306 1 932 251 52 102 chr11 138119280 138119754 -10663718 - HAL1 LINE L1 -5 2502 2063 2087 111 3 19 chr11 138119754 138120070 -10663402 - AluSx SINE Alu -1 311 1 932 251 52 102 chr11 138120070 138120196 -10663276 - HAL1 LINE L1 -444 2063 1932 1397 179 6 70 chr11 138120196 138120508 -10662964 + AluJo SINE Alu 1 292 -20 26 50 0 0 chr11 138120748 138120788 -10662684 + AT_rich Low_complexity Low_complexity 1 40 0 2079 118 3 7 chr11 138120839 138121143 -10662329 + AluSx SINE Alu 1 303 -9 1928 123 58 10 chr11 138121149 138121441 -10662031 + AluJb SINE Alu 1 306 -6 2132 256 126 58 chr11 138121730 138121841 -10661631 - HAL1 LINE L1 -793 1714 1612 1575 186 7 10 chr11 138121841 138122131 -10661341 + AluJo SINE Alu 1 289 -23 2132 256 126 58 chr11 138122131 138122166 -10661306 - HAL1 LINE L1 -895 1612 1581 1625 80 0 5 chr11 138122166 138122378 -10661094 + AluSc SINE Alu 88 298 -11 2132 256 126 58 chr11 138122378 138122407 -10661065 - HAL1 LINE L1 -926 1581 1555 2084 135 0 0 chr11 138122407 138122719 -10660753 + AluSx SINE Alu 1 312 0 2132 256 126 58 chr11 138122719 138123700 -10659772 - HAL1 LINE L1 -952 1555 462 1808 156 10 0 chr11 138123700 138124001 -10659471 - AluJb SINE Alu -8 304 1 2132 256 126 58 chr11 138124001 138124105 -10659367 - HAL1 LINE L1 -2045 462 366 1499 185 84 0 chr11 138124167 138124454 -10659018 - AluJo SINE Alu -1 311 1 390 310 120 5 chr11 138124574 138124758 -10658714 + L2 LINE L2 3084 3288 -25 762 133 0 0 chr11 138124789 138124894 -10658578 + AluSq/x SINE Alu 2 106 -207 451 141 0 0 chr11 138124900 138124971 -10658501 + AluS SINE Alu 225 295 -5 560 128 0 21 chr11 138125082 138125176 -10658296 - MIR SINE MIR -136 126 35 745 313 113 36 chr11 138127370 138127717 -10655755 + HAL1 LINE L1 813 1132 -1375 2468 53 0 3 chr11 138127717 138128018 -10655454 + AluY SINE Alu 1 300 -11 2159 93 3 13 chr11 138128018 138128328 -10655144 + AluSx SINE Alu 1 307 -5 745 313 113 36 chr11 138128328 138128531 -10654941 + HAL1 LINE L1 1132 1318 -1189 1370 91 115 14 chr11 138128531 138128740 -10654732 + MER30 DNA MER1_type 1 230 0 745 313 113 36 chr11 138128740 138128861 -10654611 + HAL1 LINE L1 1318 2080 -427 1908 137 14 0 chr11 138128962 138129254 -10654218 + AluSx SINE Alu 1 296 -16 2036 154 0 0 chr11 138129386 138129697 -10653775 - AluJb SINE Alu -1 311 1 1135 140 17 0 chr11 138129709 138129888 -10653584 - L1PA15 LINE L1 0 6165 5984 550 148 0 4 chr11 138129888 138129986 -10653486 - L1PA15 LINE L1 -408 5746 5652 4835 83 20 1 chr11 138129988 138130635 -10652837 - L1PB1 LINE L1 0 6151 5493 1476 108 9 0 chr11 138130635 138130857 -10652615 + L1PA15 LINE L1 5761 5984 -181 525 260 93 31 chr11 138131347 138131605 -10651867 - L1ME3A LINE L1 -219 5951 5678 253 273 29 101 chr11 138132285 138132337 -10651135 - MER112 DNA MER1_type -43 217 163 2094 105 0 34 chr11 138132337 138132660 -10650812 + AluSx SINE Alu 1 312 0 253 273 29 101 chr11 138132660 138132746 -10650726 - MER112 DNA MER1_type -97 163 89 2115 116 0 0 chr11 138132747 138133039 -10650433 + AluSq SINE Alu 1 292 -21 542 325 150 28 chr11 138133232 138133632 -10649840 + L2 LINE L2 2823 3271 -1 269 232 32 74 chr11 138133636 138133731 -10649741 - MIR SINE MIR -165 97 7 216 324 59 0 chr11 138134508 138134576 -10648896 + L2 LINE L2 3164 3235 -37 455 229 8 30 chr11 138134646 138134777 -10648695 - L2 LINE L2 -979 2335 2208 465 269 160 0 chr11 138134787 138134943 -10648529 - MER5A DNA MER1_type 0 189 9 243 269 148 28 chr11 138134959 138135067 -10648405 + MER58C DNA MER1_type 1 121 -94 360 284 43 0 chr11 138135087 138135203 -10648269 + MER58C DNA MER1_type 92 212 -3 1676 156 136 0 chr11 138135340 138135642 -10647830 - MER2 DNA MER2_type 0 344 2 1988 87 59 24 chr11 138135663 138135952 -10647520 + AluSq SINE Alu 1 299 -14 192 277 0 0 chr11 138136708 138136755 -10646717 - L3 LINE CR1 -5 1572 1526 189 74 0 0 chr11 138136979 138137006 -10646466 + (A)n Simple_repeat Simple_repeat 1 27 0 2064 141 0 3 chr11 138137028 138137341 -10646131 + AluSx SINE Alu 1 312 0 240 321 12 0 chr11 138137657 138137741 -10645731 + L1MC/D LINE L1 5786 5870 -1938 1453 201 14 0 chr11 138137970 138138264 -10645208 - AluJb SINE Alu -14 298 1 384 278 13 73 chr11 138138660 138138811 -10644661 + MER91A DNA MER1_type 47 188 -8 223 313 175 14 chr11 138139573 138139790 -10643682 - L2 LINE L2 -343 2971 2720 913 122 0 0 chr11 138139803 138139926 -10643546 - FLAM_C SINE Alu -6 127 5 339 318 101 11 chr11 138139976 138140155 -10643317 - MIR SINE MIR -63 199 5 2300 71 14 0 chr11 138140208 138140505 -10642967 + AluY SINE Alu 1 301 -10 369 273 25 37 chr11 138140513 138140674 -10642798 + MIR SINE MIR 85 243 -19 213 295 22 22 chr11 138144080 138144219 -10639253 + CT-rich Low_complexity Low_complexity 2 140 0 443 341 42 58 chr11 138145016 138145382 -10638090 + MER89-int LTR ERV1 4648 5018 -2519 2117 110 7 3 chr11 138145382 138145682 -10637790 - AluSx SINE Alu -11 301 1 443 341 42 58 chr11 138145682 138145884 -10637588 + MER89-int LTR ERV1 5018 5222 -2315 2155 125 0 0 chr11 138145884 138146197 -10637275 + AluSq SINE Alu 1 313 0 443 341 42 58 chr11 138146197 138146285 -10637187 + MER89-int LTR ERV1 5222 6154 -1383 1883 89 8 0 chr11 138146991 138147248 -10636224 + AluY SINE Alu 37 295 -16 1972 104 34 14 chr11 138147887 138148184 -10635288 + AluSx SINE Alu 1 303 -9 2202 109 0 0 chr11 138148190 138148483 -10634989 + AluSx SINE Alu 1 293 -19 387 303 40 7 chr11 138148598 138148750 -10634722 + MER89-int LTR ERV1 6811 6967 -570 583 317 55 28 chr11 138149062 138149387 -10634085 + MER93a LTR ERV1 66 399 -3 23 0 0 0 chr11 138149393 138149416 -10634056 + AT_rich Low_complexity Low_complexity 1 23 0 198 103 0 0 chr11 138149770 138149799 -10633673 + (A)n Simple_repeat Simple_repeat 1 29 0 812 213 35 6 chr11 138149804 138149978 -10633494 - MER20 DNA MER1_type 0 219 41 470 314 76 0 chr11 138149989 138150161 -10633311 - MIR SINE MIR -32 230 46 290 326 67 8 chr11 138150896 138151171 -10632301 + L2 LINE L2 2725 3017 -296 2119 126 0 7 chr11 138151181 138151490 -10631982 - AluSx SINE Alu -5 307 1 368 282 0 19 chr11 138151572 138151675 -10631797 + L2 LINE L2 3213 3313 0 1607 188 27 49 chr11 138152650 138152945 -10630527 + L1MB3 LINE L1 5569 5815 -368 2235 103 6 0 chr11 138152945 138153256 -10630216 + AluSp SINE Alu 1 313 0 1607 188 27 49 chr11 138153256 138153582 -10629890 + L1MB3 LINE L1 5815 6147 -36 262 240 70 0 chr11 138153649 138153749 -10629723 + L1P5 LINE L1 5328 5434 -717 698 332 42 3 chr11 138153758 138154095 -10629377 + L1ME3A LINE L1 5526 5875 -295 2379 86 0 0 chr11 138154197 138154500 -10628972 + AluSg SINE Alu 1 303 -7 24 67 0 0 chr11 138154640 138154685 -10628787 + AT_rich Low_complexity Low_complexity 1 45 0 1828 136 34 7 chr11 138154692 138154987 -10628485 + AluSx SINE Alu 1 303 -9 313 311 113 20 chr11 138155211 138155814 -10627658 + L1ME4a LINE L1 5307 5966 -155 2034 115 3 26 chr11 138156120 138156432 -10627040 + AluSq SINE Alu 7 311 -2 388 305 7 66 chr11 138156640 138156791 -10626681 + MER91A DNA MER1_type 47 188 -8 733 138 32 24 chr11 138157320 138157443 -10626029 - AluSq/x SINE Alu -188 125 2 406 287 105 24 chr11 138157476 138157499 -10625973 - MIR SINE MIR -32 230 210 2070 121 10 0 chr11 138157499 138157797 -10625675 - AluSx SINE Alu -11 301 1 406 287 105 24 chr11 138157797 138157982 -10625490 - MIR SINE MIR -52 210 5 204 318 23 47 chr11 138157994 138158123 -10625349 + MIR SINE MIR 118 243 -19 213 295 22 22 chr11 138161281 138161420 -10622052 + CT-rich Low_complexity Low_complexity 2 140 0 256 300 133 0 chr11 138162744 138162834 -10620638 + MIR3 SINE MIR 81 182 -26 257 256 93 0 chr11 138162880 138162966 -10620506 - MIR SINE MIR -99 163 70 2219 98 0 13 chr11 138163162 138163469 -10620003 + AluSx SINE Alu 1 303 -9 1189 129 59 5 chr11 138163586 138163788 -10619684 - AluSg/x SINE Alu -4 308 96 270 250 20 80 chr11 138166641 138166741 -10616731 - MIR SINE MIR -80 128 35 2244 69 35 0 chr11 138167603 138167892 -10615580 - AluSg SINE Alu -10 300 2 215 255 59 0 chr11 138169860 138169911 -10613561 + L2 LINE L2 3259 3312 -1 1149 128 0 12 chr11 138170195 138170367 -10613105 + AluSg/x SINE Alu 129 298 -14 215 302 81 0 chr11 138174218 138174304 -10609168 + MIR SINE MIR 127 219 -43 1343 92 49 0 chr11 138174556 138174740 -10608732 - AluSg/x SINE Alu -11 301 109 2007 110 40 7 chr11 138174741 138175042 -10608430 - AluSq SINE Alu 0 313 3 180 261 0 22 chr11 138175044 138175090 -10608382 - MIR SINE MIR -112 150 106 279 339 63 8 chr11 138175640 138175767 -10607705 - MIR SINE MIR -26 236 103 285 201 6 127 chr11 138175949 138176047 -10607425 + MIR SINE MIR 6 114 -148 2186 98 0 0 chr11 138176047 138176363 -10607109 + AluSq SINE Alu 1 316 0 285 201 6 127 chr11 138176363 138176428 -10607044 + MIR SINE MIR 114 249 -13 259 350 28 14 chr11 138176774 138176798 -10606674 - MER5B DNA MER1_type -33 145 123 243 0 0 0 chr11 138176798 138176825 -10606647 + (GA)n Simple_repeat Simple_repeat 2 28 0 259 350 28 14 chr11 138176825 138176943 -10606529 - MER5B DNA MER1_type -55 123 1 354 334 130 47 chr11 138176973 138177395 -10606077 + L2 LINE L2 2813 3269 -3 1172 136 0 6 chr11 138177548 138177724 -10605748 + AluSq SINE Alu 1 175 -138 180 0 0 0 chr11 138177905 138177925 -10605547 + (CAA)n Simple_repeat Simple_repeat 2 21 0 443 322 22 63 chr11 138178812 138179082 -10604390 + L2 LINE L2 3042 3300 -13 2327 80 3 0 chr11 138179655 138179955 -10603517 + AluSp SINE Alu 1 301 -12 1843 129 58 14 chr11 138179964 138180258 -10603214 + AluJb SINE Alu 1 307 -5 2152 255 126 58 chr11 138180546 138180657 -10602815 - HAL1 LINE L1 -793 1714 1612 1575 186 7 10 chr11 138180657 138180947 -10602525 + AluJo SINE Alu 1 289 -23 2152 255 126 58 chr11 138180947 138180982 -10602490 - HAL1 LINE L1 -895 1612 1581 1600 85 0 5 chr11 138180982 138181193 -10602279 + AluSc SINE Alu 88 297 -12 2152 255 126 58 chr11 138181193 138181222 -10602250 - HAL1 LINE L1 -926 1581 1555 2100 132 0 0 chr11 138181222 138181533 -10601939 + AluSx SINE Alu 1 311 -1 2152 255 126 58 chr11 138181533 138182513 -10600959 - HAL1 LINE L1 -952 1555 461 1756 164 10 0 chr11 138182513 138182812 -10600660 - AluJb SINE Alu -10 302 1 2152 255 126 58 chr11 138182812 138182916 -10600556 - HAL1 LINE L1 -2046 461 366 1499 185 84 0 chr11 138182978 138183265 -10600207 - AluJo SINE Alu -1 311 1 390 310 120 5 chr11 138183385 138183569 -10599903 + L2 LINE L2 3084 3288 -25 762 133 0 0 chr11 138183600 138183705 -10599767 + AluSq/x SINE Alu 2 106 -206 446 143 0 0 chr11 138183711 138183781 -10599691 + AluS SINE Alu 225 294 -6 560 128 0 21 chr11 138183892 138183986 -10599486 - MIR SINE MIR -136 126 35 363 297 64 55 chr11 138186180 138186507 -10596965 + HAL1 LINE L1 813 1142 -1365 2632 50 0 3 chr11 138186527 138186829 -10596643 + AluY SINE Alu 1 301 -10 2269 94 3 13 chr11 138186831 138187140 -10596332 + AluSx SINE Alu 1 306 -6 267 286 158 30 chr11 138187140 138187343 -10596129 + HAL1 LINE L1 1705 1933 -574 1351 91 115 14 chr11 138187343 138187552 -10595920 + MER30 DNA MER1_type 1 230 0 2027 137 14 0 chr11 138187774 138188066 -10595406 + AluSx SINE Alu 1 296 -16 2150 158 0 0 chr11 138188198 138188509 -10594963 - AluJb SINE Alu -1 311 1 1108 140 17 0 chr11 138188521 138188700 -10594772 - L1PA15 LINE L1 0 6165 5984 554 154 0 6 chr11 138188700 138188799 -10594673 - L1M3 LINE L1 -419 5746 5652 4779 83 20 1 chr11 138188800 138189447 -10594025 - L1PB1 LINE L1 0 6151 5493 1474 108 9 0 chr11 138189447 138189669 -10593803 + L1PA15 LINE L1 5761 5984 -181 317 322 63 63 chr11 138189883 138190088 -10593384 - L1ME3A LINE L1 -1 6169 5965 492 260 93 31 chr11 138190159 138190417 -10593055 - L1ME3A LINE L1 -219 5951 5678 234 273 29 101 chr11 138191094 138191146 -10592326 - MER112 DNA MER1_type -43 217 163 2217 105 0 34 chr11 138191146 138191469 -10592003 + AluSx SINE Alu 1 312 0 234 273 29 101 chr11 138191469 138191555 -10591917 - MER112 DNA MER1_type -97 163 89 2230 116 0 0 chr11 138191556 138191848 -10591624 + AluSq SINE Alu 1 292 -21 591 320 150 28 chr11 138192041 138192441 -10591031 + L2 LINE L2 2823 3271 -1 285 232 32 74 chr11 138192445 138192540 -10590932 - MIR SINE MIR -165 97 7 227 324 59 0 chr11 138193317 138193385 -10590087 + L2 LINE L2 3164 3235 -37 479 206 23 46 chr11 138193455 138193586 -10589886 - L2 LINE L2 -979 2335 2208 508 264 130 0 chr11 138193596 138193757 -10589715 - MER5A DNA MER1_type 0 189 4 227 269 148 28 chr11 138193768 138193876 -10589596 + MER58 DNA MER1_type 1 121 -2299 352 221 15 17 chr11 138193896 138194012 -10589460 + MER58 DNA MER1_type 92 2417 -3 1669 152 136 0 chr11 138194149 138194451 -10589021 - MER2 DNA MER2_type 0 344 2 2021 88 62 43 chr11 138194472 138194777 -10588695 + AluSq SINE Alu 1 311 -2 201 277 0 0 chr11 138195515 138195562 -10587910 - L3 LINE CR1 -5 1572 1526 207 233 0 0 chr11 138195752 138195795 -10587677 + L2 LINE L2 3179 3221 -92 540 214 203 27 chr11 138195828 138196015 -10587457 + MIR SINE MIR 1 220 -42 2229 84 7 3 chr11 138196078 138196363 -10587109 + AluSg SINE Alu 1 286 -24 2233 133 0 10 chr11 138196429 138196738 -10586734 - AluSx SINE Alu -6 306 1 850 168 78 39 chr11 138196739 138196918 -10586554 - MER20 DNA MER1_type -3 216 31 2267 123 0 0 chr11 138197402 138197695 -10585777 - AluSx SINE Alu -19 293 1 362 236 89 57 chr11 138197807 138197930 -10585542 - MIR SINE MIR -60 148 22 255 46 108 0 chr11 138198000 138198065 -10585407 + (CAAA)n Simple_repeat Simple_repeat 4 75 0 251 136 23 0 chr11 138198065 138198109 -10585363 + Alu SINE Alu 1 45 -255 207 175 175 0 chr11 138198472 138198529 -10584943 + MIR SINE MIR 83 149 -113 2171 76 3 21 chr11 138198640 138198952 -10584520 + AluSx SINE Alu 1 307 0 218 303 101 20 chr11 138199197 138199296 -10584176 + L2 LINE L2 3126 3232 -40 201 74 0 0 chr11 138200704 138200731 -10582741 + (T)n Simple_repeat Simple_repeat 1 27 0 2322 72 10 3 chr11 138200858 138201150 -10582322 + AluSc SINE Alu 1 294 -15 2303 84 0 3 chr11 138201386 138201672 -10581800 + AluY SINE Alu 1 285 -26 1064 156 0 0 chr11 138201837 138201991 -10581481 + FRAM SINE Alu 7 160 -16 584 194 89 0 chr11 138202085 138202209 -10581263 - MER3 DNA MER1_type -74 135 1 2333 108 3 0 chr11 138202281 138202577 -10580895 + AluSx SINE Alu 6 302 -10 28 0 0 0 chr11 138202582 138202610 -10580862 + AT_rich Low_complexity Low_complexity 1 28 0 241 173 19 0 chr11 138202734 138202786 -10580686 + (CA)n Simple_repeat Simple_repeat 1 53 0 567 129 23 0 chr11 138202798 138202930 -10580542 + (CA)n Simple_repeat Simple_repeat 1 135 0 2245 102 14 0 chr11 138204555 138204850 -10578622 - AluSx SINE Alu -13 299 1 422 158 348 61 chr11 138204984 138205148 -10578324 + MIR SINE MIR 8 218 -44 869 188 125 6 chr11 138205273 138205449 -10578023 + MER58A DNA MER1_type 28 224 0 333 256 0 29 chr11 138205449 138205555 -10577917 - MER5A DNA MER1_type -34 145 53 1769 140 72 10 chr11 138206626 138206918 -10576554 + AluJb SINE Alu 1 310 -2 2157 150 0 0 chr11 138206955 138207261 -10576211 + AluSx SINE Alu 1 306 -6 810 282 141 34 chr11 138208038 138208591 -10574881 + L2 LINE L2 2243 2854 -460 437 286 62 0 chr11 138208782 138208894 -10574578 + L2 LINE L2 3154 3272 0 2330 87 24 0 chr11 138209211 138209509 -10573963 - AluSx SINE Alu -7 305 1 293 226 302 0 chr11 138213544 138213650 -10569822 + MIR SINE MIR 73 210 -52 22 56 0 0 chr11 138216249 138216285 -10567187 + AT_rich Low_complexity Low_complexity 1 36 0 1513 139 114 26 chr11 138217240 138217513 -10565959 - AluJo SINE Alu -14 298 2 656 243 119 6 chr11 138218217 138218394 -10565078 - MER3 DNA MER1_type -11 198 2 245 268 161 43 chr11 138218499 138218779 -10564693 + L1ME LINE L1 5545 5857 -264 1921 177 0 3 chr11 138218887 138219198 -10564274 + AluJb SINE Alu 1 310 -2 2351 75 0 0 chr11 138219205 138219484 -10563988 + AluY SINE Alu 6 284 -27 2439 77 0 3 chr11 138219497 138219794 -10563678 + AluSc SINE Alu 3 298 -11 196 182 0 0 chr11 138219939 138219972 -10563500 + L2 LINE L2 3217 3249 -23 1643 163 34 0 chr11 138220821 138221085 -10562387 - AluJo SINE Alu -18 294 22 875 289 159 64 chr11 138221464 138222194 -10561278 - L1ME4a LINE L1 -4 6117 5319 1992 154 16 0 chr11 138222926 138223231 -10560241 - AluSx SINE Alu -2 310 1 2163 108 0 10 chr11 138223236 138223531 -10559941 - AluSx SINE Alu -2 310 19 1726 164 31 10 chr11 138224377 138224669 -10558803 - AluJo SINE Alu -14 298 1 303 297 18 9 chr11 138225592 138225703 -10557769 + MLT1H LTR MaLR 436 547 -2 2172 138 0 0 chr11 138226169 138226467 -10557005 - AluSx SINE Alu -14 298 1 1805 178 11 0 chr11 138226469 138226756 -10556716 - AluJo SINE Alu -22 290 1 216 386 31 31 chr11 138226761 138226924 -10556548 - L2 LINE L2 0 3272 3110 2322 92 0 0 chr11 138226934 138227246 -10556226 + AluSq SINE Alu 2 313 0 1532 102 5 0 chr11 138227251 138227447 -10556025 + AluSp SINE Alu 14 210 -103 247 281 194 36 chr11 138227470 138227666 -10555806 - L2 LINE L2 -139 3174 2948 250 178 68 27 chr11 138228261 138228334 -10555138 + L1ME2 LINE L1 6088 6163 -1 2644 44 0 0 chr11 138228828 138229126 -10554346 + AluY SINE Alu 1 298 -13 424 237 31 0 chr11 138229131 138229228 -10554244 + MIR SINE MIR 142 241 -21 2475 94 0 3 chr11 138229459 138229768 -10553704 - AluSg SINE Alu -2 308 1 682 174 0 25 chr11 138229996 138230117 -10553355 - FLAM_C SINE Alu -14 129 12 967 188 16 0 chr11 138230360 138230546 -10552926 + MSTD LTR MaLR 1 189 -207 2335 65 3 14 chr11 138230549 138230841 -10552631 + AluSc SINE Alu 1 289 -20 1657 180 32 11 chr11 138231087 138231371 -10552101 - AluJo SINE Alu -9 303 14 405 84 56 14 chr11 138231445 138231516 -10551956 - L1MB8 LINE L1 -1 6177 6104 370 286 19 9 chr11 138231957 138232062 -10551410 - L2 LINE L2 -7 3265 3160 272 57 0 0 chr11 138232279 138232314 -10551158 - U2 snRNA snRNA -153 35 1 297 310 42 35 chr11 138232537 138232679 -10550793 - MER5A DNA MER1_type -2 187 45 228 194 15 30 chr11 138233002 138233069 -10550403 + C-rich Low_complexity Low_complexity 4 69 0 192 321 36 0 chr11 138233157 138233213 -10550259 + L2 LINE L2 3206 3263 -9 205 260 104 0 chr11 138233327 138233404 -10550068 + MIR3 SINE MIR 79 163 -45 932 169 7 7 chr11 138233525 138233679 -10549793 + FRAM SINE Alu 2 155 -11 2360 99 0 0 chr11 138235295 138235587 -10547885 + AluSc SINE Alu 6 297 -12 1697 228 30 0 chr11 138238580 138238953 -10544519 + MLT1B LTR MaLR 1 384 -6 360 229 167 35 chr11 138239294 138239438 -10544034 - MIR3 SINE MIR -11 197 35 387 275 41 58 chr11 138239569 138239740 -10543732 + MIR SINE MIR 16 183 -79 3769 169 75 37 chr11 138241914 138242266 -10541206 + L1MB8 LINE L1 4872 5209 -969 2190 110 17 0 chr11 138242266 138242558 -10540914 + AluSq SINE Alu 1 297 -16 3769 169 75 37 chr11 138242558 138243096 -10540376 + L1MB8 LINE L1 5209 5814 -364 2165 134 0 0 chr11 138243096 138243402 -10540070 + AluSx SINE Alu 1 306 -6 3769 169 75 37 chr11 138243402 138243614 -10539858 + L1MB8 LINE L1 5814 6017 -161 2411 93 3 3 chr11 138243963 138244276 -10539196 + AluSq SINE Alu 1 313 0 1289 259 80 86 chr11 138244595 138245285 -10538187 + MER21B LTR ERV1 29 714 -149 210 310 40 10 chr11 138245865 138245965 -10537507 - L2 LINE L2 -999 2315 2213 257 174 0 0 chr11 138246465 138246511 -10536961 + HAL1 LINE L1 2462 2507 0 2415 90 3 0 chr11 138246722 138247021 -10536451 + AluSp SINE Alu 1 300 -13 339 267 121 0 chr11 138247086 138247202 -10536270 + L1MC/D LINE L1 5584 5713 -2095 1143 139 0 0 chr11 138247204 138247376 -10536096 - AluSg/x SINE Alu 0 310 139 354 134 0 0 chr11 138247441 138247508 -10535964 + (TA)n Simple_repeat Simple_repeat 1 67 0 2306 76 3 3 chr11 138247508 138247796 -10535676 - AluSg SINE Alu -16 294 7 1638 183 17 10 chr11 138248074 138248369 -10535103 - AluJb SINE Alu -15 297 1 778 163 7 22 chr11 138248644 138248779 -10534693 + FLAM_C SINE Alu 6 138 -5 356 307 132 21 chr11 138248811 138249000 -10534472 - MIR SINE MIR -7 255 46 487 172 20 0 chr11 138249254 138249353 -10534119 - L1M4 LINE L1 -846 5300 5200 2307 96 3 3 chr11 138249353 138249665 -10533807 - AluSx SINE Alu 0 312 1 1012 182 0 6 chr11 138249668 138249833 -10533639 - FRAM SINE Alu -13 163 1 289 292 8 0 chr11 138249836 138249956 -10533516 - L1M4 LINE L1 -946 5200 5080 * 508 241 23 23 chr11 138249952 138250085 -10533387 - L1M4 LINE L1 -1371 4775 4643 1253 113 12 0 chr11 138250086 138250254 -10533218 - 7SLRNA srpRNA srpRNA -10 310 141 473 126 0 92 chr11 138250258 138250345 -10533127 - FLAM_A SINE Alu -63 79 1 3111 213 63 57 chr11 138250346 138250562 -10532910 - L1M4 LINE L1 -1490 4656 4443 2225 105 3 0 chr11 138250562 138250858 -10532614 - AluSq SINE Alu -16 297 1 3111 213 63 57 chr11 138250858 138251460 -10532012 - L1M4 LINE L1 -1703 4443 3829 2294 112 0 0 chr11 138251460 138251756 -10531716 - AluSx SINE Alu -16 296 1 3111 213 63 57 chr11 138251756 138251891 -10531581 - L1M4 LINE L1 -2317 3829 3696 743 214 0 25 chr11 138251891 138252050 -10531422 - FRAM SINE Alu -11 165 11 559 171 8 8 chr11 138252062 138252179 -10531293 - L1M4 LINE L1 -2451 3695 3579 * 3604 173 61 17 chr11 138252178 138252935 -10530537 - L1MB7 LINE L1 -190 5994 5186 845 142 0 15 chr11 138252935 138253069 -10530403 - FLAM_C SINE Alu 0 133 2 3604 173 61 17 chr11 138253069 138253289 -10530183 - L1MB7 LINE L1 -998 5186 4977 1230 81 19 0 chr11 138253334 138253495 -10529977 - AluSg/x SINE Alu -12 300 137 2016 135 0 4 chr11 138253527 138253808 -10529664 + AluSx SINE Alu 1 280 -32 183 42 0 0 chr11 138253811 138253835 -10529637 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 197 270 119 56 chr11 138255531 138255562 -10527910 - L2 LINE L2 0 3272 3244 1497 108 0 0 chr11 138255562 138255756 -10527716 + AluSx SINE Alu 1 194 -118 197 270 119 56 chr11 138255756 138255850 -10527622 - L2 LINE L2 -28 3244 3139 1530 144 89 55 chr11 138256113 138256404 -10527068 + AluJo SINE Alu 1 301 -11 653 286 82 84 chr11 138256697 138257057 -10526415 + HAL1 LINE L1 435 795 -1712 2023 79 0 0 chr11 138257057 138257297 -10526175 - AluSx SINE Alu -72 240 1 653 286 82 84 chr11 138257297 138257485 -10525987 + HAL1 LINE L1 795 982 -1525 1456 83 0 0 chr11 138257491 138257672 -10525800 - AluSc SINE Alu 0 309 129 183 42 0 0 chr11 138257672 138257696 -10525776 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 189 0 0 0 chr11 138257805 138257826 -10525646 + (A)n Simple_repeat Simple_repeat 1 21 0 2419 81 7 0 chr11 138257826 138258123 -10525349 + AluY SINE Alu 1 299 -12 2316 254 115 62 chr11 138258123 138259222 -10524250 + HAL1 LINE L1 1003 2185 -322 2292 92 0 7 chr11 138259222 138259514 -10523958 + AluSg SINE Alu 1 290 -20 2316 254 115 62 chr11 138259514 138259742 -10523730 + HAL1 LINE L1 2185 2400 -107 1843 171 3 0 chr11 138260942 138261240 -10522232 - AluJb SINE Alu -13 299 1 2291 92 3 32 chr11 138261533 138261847 -10521625 - AluSp SINE Alu -8 305 1 444 221 237 21 chr11 138262496 138262686 -10520786 - MIR SINE MIR -21 241 11 797 103 11 109 chr11 138262687 138262862 -10520610 + MER46A DNA MER2_type 79 236 0 2265 109 0 0 chr11 138265208 138265511 -10517961 + AluSg SINE Alu 1 303 -7 2227 110 0 7 chr11 138266089 138266399 -10517073 + AluSg1 SINE Alu 1 308 -1 2113 124 10 13 chr11 138266449 138266756 -10516716 + AluSx SINE Alu 1 306 -6 1840 171 10 0 chr11 138266851 138267150 -10516322 + AluJb SINE Alu 1 302 -10 2278 108 3 0 chr11 138267587 138267892 -10515580 + AluSx SINE Alu 1 306 -6 1431 154 112 4 chr11 138267982 138268249 -10515223 - AluJb SINE Alu -16 296 1 2101 116 0 4 chr11 138269422 138269698 -10513774 - AluSx SINE Alu -16 296 22 953 265 84 66 chr11 138270628 138270912 -10512560 + L2 LINE L2 2867 3163 -150 1784 172 7 16 chr11 138270912 138271220 -10512252 - AluJb SINE Alu -7 305 1 953 265 84 66 chr11 138271220 138271362 -10512110 + L2 LINE L2 3163 3301 -12 2290 46 53 0 chr11 138271810 138272092 -10511380 - AluY SINE Alu -14 297 1 310 314 109 9 chr11 138272093 138272303 -10511169 + L2 LINE L2 2683 2913 -401 252 343 0 9 chr11 138272497 138272602 -10510870 + L2 LINE L2 3176 3279 -34 380 274 115 51 chr11 138273143 138273300 -10510172 - MIR SINE MIR -21 241 75 228 353 67 0 chr11 138273656 138273806 -10509666 + L2 LINE L2 2102 2261 -1053 2200 120 0 0 chr11 138274215 138274506 -10508966 - AluSx SINE Alu -21 291 1 1691 155 42 14 chr11 138274698 138274982 -10508490 - AluJo SINE Alu -20 292 1 23 33 0 0 chr11 138275539 138275569 -10507903 + AT_rich Low_complexity Low_complexity 1 30 0 1326 128 44 0 chr11 138275845 138276049 -10507423 + AluJo SINE Alu 99 311 -1 884 230 126 53 chr11 138276781 138277138 -10506334 - L2 LINE L2 0 3313 2931 840 216 173 67 chr11 138277215 138277696 -10505776 + HAL1 LINE L1 1221 1752 -755 276 288 96 30 chr11 138277945 138278143 -10505329 + HAL1 LINE L1 2107 2317 -190 3253 182 55 9 chr11 138278144 138278771 -10504701 + MER6 DNA MER2_type -27 795 -70 561 154 203 0 chr11 138278763 138278886 -10504586 + MER6 DNA MER2_type 663 810 -55 * 244 213 57 99 chr11 138278915 138278998 -10504474 + HAL1 LINE L1 2346 2422 -85 2152 133 0 10 chr11 138278998 138279306 -10504166 - AluSx SINE Alu -7 305 1 244 213 57 99 chr11 138279306 138279363 -10504109 + HAL1 LINE L1 2422 2480 -27 1607 148 24 28 chr11 138279375 138279666 -10503806 - AluJo SINE Alu -18 294 5 2453 74 3 0 chr11 138279683 138279982 -10503490 - AluY SINE Alu -11 300 1 269 229 191 38 chr11 138280214 138280319 -10503153 - MIR SINE MIR -66 142 22 423 0 0 0 chr11 138280871 138280918 -10502554 + (A)n Simple_repeat Simple_repeat 1 47 0 189 0 0 0 chr11 138281002 138281023 -10502449 + (A)n Simple_repeat Simple_repeat 1 21 0 472 311 7 23 chr11 138281041 138281343 -10502129 - AluYa5 SINE Alu -13 298 2 378 0 0 0 chr11 138281595 138281637 -10501835 + (A)n Simple_repeat Simple_repeat 1 42 0 429 157 0 0 chr11 138281652 138281722 -10501750 + U4 snRNA snRNA 1 70 -75 180 0 0 0 chr11 138281723 138281743 -10501729 + (A)n Simple_repeat Simple_repeat 1 20 0 2493 53 0 17 chr11 138281761 138282063 -10501409 - AluY SINE Alu -14 297 1 438 69 0 0 chr11 138285573 138285631 -10497841 + (TG)n Simple_repeat Simple_repeat 2 59 0 287 263 68 45 chr11 138285949 138286082 -10497390 - MIR SINE MIR -114 148 13 440 236 189 7 chr11 138286155 138286303 -10497169 - MER5A DNA MER1_type -2 187 13 1876 168 3 0 chr11 138286857 138287148 -10496324 + AluJo SINE Alu 5 296 -16 244 261 14 14 chr11 138287423 138287492 -10495980 + (TATATG)n Simple_repeat Simple_repeat 5 73 0 248 278 0 83 chr11 138287492 138287600 -10495872 - L1MC/D LINE L1 -1902 5906 5808 325 353 93 7 chr11 138287737 138287887 -10495585 - L1MC4a LINE L1 -1894 5914 5752 * 594 260 138 53 chr11 138287861 138288260 -10495212 - L1M2 LINE L1 -559 5753 5307 1666 118 65 99 chr11 138288260 138288582 -10494890 - AluSx SINE Alu -1 311 1 594 260 138 53 chr11 138288582 138288642 -10494830 - L1M2 LINE L1 -1005 5307 5254 216 287 124 31 chr11 138288679 138288808 -10494664 - MER5B DNA MER1_type -34 144 4 461 304 98 5 chr11 138288866 138289050 -10494422 + MIR SINE MIR 49 249 -13 2240 112 0 16 chr11 138289570 138289874 -10493598 - AluSx SINE Alu -13 299 1 2733 144 50 56 chr11 138290862 138291488 -10491984 + L1MB3 LINE L1 5562 6183 0 186 43 0 0 chr11 138291787 138291810 -10491662 + (TC)n Simple_repeat Simple_repeat 2 24 0 756 264 160 11 chr11 138293295 138293564 -10489908 - MER102b DNA MER1_type -32 309 1 1981 129 3 42 chr11 138294225 138294535 -10488937 + AluJb SINE Alu 1 298 -14 2119 127 7 7 chr11 138295467 138295775 -10487697 + AluJb SINE Alu 1 308 -4 293 194 0 133 chr11 138295992 138296090 -10487382 - MLT1B LTR MaLR -305 85 1 485 257 0 9 chr11 138296093 138296206 -10487266 - MER58 DNA MER1_type -2298 122 11 2491 88 3 0 chr11 138296605 138296910 -10486562 - AluSp SINE Alu -7 306 1 239 174 0 0 chr11 138297121 138297167 -10486305 - HAL1 LINE L1 0 2507 2462 212 316 300 16 chr11 138297667 138297917 -10485555 + L2 LINE L2 2213 2533 -781 1253 268 77 83 chr11 138298347 138299037 -10484435 - MER21B LTR ERV1 -149 714 29 2444 93 3 3 chr11 138299356 138299669 -10483803 - AluSq SINE Alu 0 313 1 3562 169 75 37 chr11 138300018 138300230 -10483242 - L1MB8 LINE L1 -161 6017 5814 2203 134 0 0 chr11 138300230 138300536 -10482936 - AluSx SINE Alu -6 306 1 3562 169 75 37 chr11 138300536 138301074 -10482398 - L1MB8 LINE L1 -364 5814 5209 2225 110 17 0 chr11 138301074 138301366 -10482106 - AluSq SINE Alu -16 297 1 3562 169 75 37 chr11 138301366 138301718 -10481754 - L1MB8 LINE L1 -969 5209 4872 420 275 41 58 chr11 138303892 138304063 -10479409 - MIR SINE MIR -79 183 16 376 229 167 35 chr11 138304194 138304338 -10479134 + MIR3 SINE MIR 35 197 -11 183 326 0 0 chr11 138304319 138304362 -10479110 + L3b LINE CR1 1530 1572 -11 * 1728 225 30 0 chr11 138304679 138305052 -10478420 - MLT1B LTR MaLR -6 384 1 206 327 168 0 chr11 138305100 138305207 -10478265 - MIR SINE MIR -14 248 124 2370 99 0 0 chr11 138308045 138308337 -10475135 - AluSc SINE Alu -12 297 6 868 169 7 7 chr11 138309953 138310107 -10473365 - FRAM SINE Alu -11 155 2 189 260 104 0 chr11 138310228 138310305 -10473167 - MIR3 SINE MIR -45 163 79 228 194 15 30 chr11 138310563 138310630 -10472842 + G-rich Low_complexity Low_complexity 4 69 0 360 316 17 8 chr11 138310947 138311089 -10472383 - MER5A DNA MER1_type -33 156 3 272 57 0 0 chr11 138311312 138311347 -10472125 + U2 snRNA snRNA 1 35 -153 347 286 19 9 chr11 138311564 138311669 -10471803 + L2 LINE L2 3160 3265 -7 385 84 56 14 chr11 138312110 138312181 -10471291 + L1MB8 LINE L1 6104 6177 -1 1697 181 31 10 chr11 138312255 138312548 -10470924 + AluJo SINE Alu 14 312 0 1941 126 86 0 chr11 138312569 138312847 -10470625 + AluSx SINE Alu 1 302 -10 201 180 40 0 chr11 138312969 138313019 -10470453 + L3b LINE CR1 1182 1233 -350 326 205 24 110 chr11 138313343 138313401 -10470071 + MER94 DNA DNA 19 63 -71 1732 164 21 14 chr11 138313401 138313706 -10469766 + AluJb SINE Alu 1 307 0 326 205 24 110 chr11 138313706 138313773 -10469699 + MER94 DNA DNA 63 134 0 26 64 0 0 chr11 138314725 138314772 -10468700 + AT_rich Low_complexity Low_complexity 1 47 0 1537 117 45 20 chr11 138315340 138315587 -10467885 - THE1B LTR MaLR -1 363 111 1186 146 14 42 chr11 138315839 138316052 -10467420 - AluJo SINE Alu -6 306 100 465 282 98 0 chr11 138316068 138316231 -10467241 - MIR SINE MIR -14 248 70 2552 89 0 0 chr11 138316732 138317045 -10466427 - AluSp SINE Alu 0 313 1 24 32 0 0 chr11 138317228 138317259 -10466213 + AT_rich Low_complexity Low_complexity 1 31 0 581 141 0 0 chr11 138317277 138317376 -10466096 - AluSg/x SINE Alu -9 303 205 2035 227 50 7 chr11 138317419 138317881 -10465591 + LTR16C LTR ERVL 8 489 -2 2322 106 0 0 chr11 138318964 138319256 -10464216 + AluSc SINE Alu 1 292 -17 231 36 0 0 chr11 138320372 138320400 -10463072 + (TG)n Simple_repeat Simple_repeat 2 29 0 225 119 0 0 chr11 138320401 138320443 -10463029 + (GA)n Simple_repeat Simple_repeat 2 43 0 404 256 50 11 chr11 138321894 138322039 -10461433 + MIR SINE MIR 70 221 -41 881 188 44 6 chr11 138322159 138322340 -10461132 + MER20 DNA MER1_type 32 219 0 1575 155 17 45 chr11 138322480 138322803 -10460669 + AluJo SINE Alu 1 315 0 633 215 49 14 chr11 138323129 138323273 -10460199 - MIR SINE MIR -74 188 40 238 226 97 0 chr11 138324549 138324611 -10458861 - MIR SINE MIR -74 188 121 2388 90 3 3 chr11 138324745 138325056 -10458416 - AluSx SINE Alu -1 311 1 1051 201 127 9 chr11 138325070 138325408 -10458064 - L1M4 LINE L1 -897 5249 4872 420 275 41 58 chr11 138327581 138327752 -10455720 - MIR SINE MIR -79 183 16 376 229 167 35 chr11 138327883 138328027 -10455445 + MIR3 SINE MIR 35 197 -11 183 326 0 0 chr11 138328008 138328051 -10455421 + L3b LINE CR1 1530 1572 -11 * 1728 225 30 0 chr11 138328368 138328741 -10454731 - MLT1B LTR MaLR -6 384 1 206 327 168 0 chr11 138328789 138328896 -10454576 - MIR SINE MIR -14 248 124 2370 99 0 0 chr11 138331734 138332026 -10451446 - AluSc SINE Alu -12 297 6 868 169 7 7 chr11 138333641 138333795 -10449677 - FRAM SINE Alu -11 155 2 189 260 104 0 chr11 138333916 138333993 -10449479 - MIR3 SINE MIR -45 163 79 228 194 15 30 chr11 138334251 138334318 -10449154 + G-rich Low_complexity Low_complexity 4 69 0 360 316 17 8 chr11 138334635 138334777 -10448695 - MER5A DNA MER1_type -33 156 3 272 57 0 0 chr11 138335000 138335035 -10448437 + U2 snRNA snRNA 1 35 -153 347 286 19 9 chr11 138335252 138335357 -10448115 + L2 LINE L2 3160 3265 -7 385 84 56 14 chr11 138335798 138335869 -10447603 + L1MB8 LINE L1 6104 6177 -1 1697 181 31 10 chr11 138335943 138336236 -10447236 + AluJo SINE Alu 14 312 0 1941 126 86 0 chr11 138336257 138336535 -10446937 + AluSx SINE Alu 1 302 -10 201 180 40 0 chr11 138336657 138336707 -10446765 + L3b LINE CR1 1182 1233 -350 326 205 24 110 chr11 138337031 138337089 -10446383 + MER94 DNA DNA 19 63 -71 1732 164 21 14 chr11 138337089 138337394 -10446078 + AluJb SINE Alu 1 307 0 326 205 24 110 chr11 138337394 138337461 -10446011 + MER94 DNA DNA 63 134 0 3689 163 23 22 chr11 138338072 138338433 -10445039 - L1MB8 LINE L1 -1 6177 5818 1538 122 61 113 chr11 138338433 138338762 -10444710 - AluJo SINE Alu 0 312 1 3689 163 23 22 chr11 138338762 138339151 -10444321 - L1MB8 LINE L1 -360 5818 5436 2361 91 3 3 chr11 138339151 138339449 -10444023 - AluSc SINE Alu -11 298 1 3689 163 23 22 chr11 138339449 138339827 -10443645 - L1MB8 LINE L1 -742 5436 5060 204 286 86 0 chr11 138339900 138339970 -10443502 - MER91A DNA MER1_type -3 193 118 2124 136 3 3 chr11 138340515 138340809 -10442663 - AluJb SINE Alu -18 294 1 1795 185 28 0 chr11 138341137 138341423 -10442049 + AluJo SINE Alu 1 294 -18 1478 137 0 0 chr11 138341580 138341792 -10441680 + AluJo SINE Alu 1 212 -100 1028 262 92 64 chr11 138342515 138343018 -10440454 + MLT1F1 LTR MaLR 3 525 -42 2320 106 3 0 chr11 138343018 138343321 -10440151 + AluSq SINE Alu 2 305 -8 1028 262 92 64 chr11 138343321 138343365 -10440107 + MLT1F1 LTR MaLR 525 566 -1 296 328 70 12 chr11 138343827 138343998 -10439474 - MIR3 SINE MIR -14 194 14 222 239 57 57 chr11 138344580 138344668 -10438804 + L2 LINE L2 3000 3087 -185 554 294 25 6 chr11 138344795 138344958 -10438514 - LTR16A LTR ERVL -92 358 193 290 278 87 24 chr11 138345120 138345246 -10438226 - L3 LINE CR1 -313 1264 1131 2867 158 58 12 chr11 138345256 138345825 -10437647 + Tigger3b DNA MER2_type 2 596 -635 1884 162 0 43 chr11 138345839 138346166 -10437306 - AluSq SINE Alu 0 313 1 208 297 60 61 chr11 138346817 138346970 -10436502 - MIR SINE MIR -58 150 16 281 295 41 41 chr11 138347700 138347822 -10435650 - MIR SINE MIR -129 133 12 2339 57 0 53 chr11 138348060 138348361 -10435111 + AluY SINE Alu 1 285 -26 269 208 0 0 chr11 138348386 138348439 -10435033 + MER5B DNA MER1_type 126 178 0 1824 159 6 34 chr11 138348894 138349070 -10434402 - AluJb SINE Alu 0 312 148 270 0 0 0 chr11 138349070 138349100 -10434372 + (TA)n Simple_repeat Simple_repeat 2 31 0 1824 159 6 34 chr11 138349100 138349244 -10434228 - AluJb SINE Alu -164 148 1 2532 84 0 3 chr11 138349255 138349565 -10433907 - AluSg SINE Alu -1 309 1 1559 195 20 13 chr11 138349618 138349920 -10433552 + AluJo SINE Alu 1 304 -8 290 394 75 16 chr11 138350156 138350344 -10433128 - L3b LINE CR1 -11 1572 1374 321 285 44 51 chr11 138350678 138350797 -10432675 + L2 LINE L2 3116 3235 -37 2231 89 46 62 chr11 138350797 138351097 -10432375 + THE1B LTR MaLR 1 295 -69 2125 141 0 6 chr11 138351097 138351409 -10432063 + AluSx SINE Alu 1 310 -2 2231 89 46 62 chr11 138351409 138351478 -10431994 + THE1B LTR MaLR 295 364 0 321 285 44 51 chr11 138351478 138351516 -10431956 + L2 LINE L2 3235 3272 0 244 162 243 27 chr11 138352542 138352616 -10430856 - MIR SINE MIR -10 252 163 207 162 0 0 chr11 138353186 138353223 -10430249 + (CAT)n Simple_repeat Simple_repeat 2 38 0 1550 122 79 73 chr11 138354660 138354963 -10428509 - AluJo SINE Alu -7 305 1 342 287 10 0 chr11 138355176 138355277 -10428195 + MIR SINE MIR 32 133 -75 1820 147 77 0 chr11 138355547 138355832 -10427640 - AluSx SINE Alu -3 309 3 199 311 22 22 chr11 138357025 138357115 -10426357 - MIR SINE MIR -99 109 20 431 237 51 77 chr11 138357394 138357508 -10425964 - MIR SINE MIR -15 247 137 5772 34 4 0 chr11 138357508 138358217 -10425255 + L1PA5 LINE L1 5440 6151 -3 431 237 51 77 chr11 138358217 138358258 -10425214 - MIR SINE MIR -125 137 96 205 113 75 38 chr11 138359292 138359345 -10424127 + (CCCTG)n Simple_repeat Simple_repeat 2 56 0 398 203 61 6 chr11 138360400 138360563 -10422909 + (CA)n Simple_repeat Simple_repeat 1 172 0 225 0 0 0 chr11 138360701 138360726 -10422746 + (CA)n Simple_repeat Simple_repeat 1 25 0 1878 164 44 0 chr11 138362368 138362661 -10420811 + AluSx SINE Alu 1 306 -6 530 241 31 25 chr11 138362678 138362840 -10420632 + MIR SINE MIR 46 208 -54 2042 164 0 0 chr11 138363139 138363449 -10420023 - AluSx SINE Alu 0 312 3 33 0 0 0 chr11 138363501 138363534 -10419938 + AT_rich Low_complexity Low_complexity 1 33 0 259 143 18 54 chr11 138364251 138364307 -10419165 + MIR SINE MIR 110 163 -99 351 231 97 37 chr11 138366142 138366276 -10417196 - MIR3 SINE MIR -12 196 55 1492 295 67 51 chr11 138366624 138367692 -10415780 + L1MEd LINE L1 152 1236 -4883 325 305 61 30 chr11 138368738 138368902 -10414570 + MIR SINE MIR 39 207 -55 215 154 26 0 chr11 138369794 138369833 -10413639 + CT-rich Low_complexity Low_complexity 3 42 0 423 183 126 114 chr11 138370675 138370850 -10412622 - MER69A DNA AcHobo 0 177 1 492 247 38 38 chr11 138370926 138371112 -10412360 - MER5A DNA MER1_type 0 189 4 1581 188 29 16 chr11 138371115 138371423 -10412049 + AluJb SINE Alu 1 312 0 190 306 111 42 chr11 138371451 138371595 -10411877 - MIR3 SINE MIR -52 156 3 532 95 0 32 chr11 138372600 138372695 -10410777 + (GGGA)n Simple_repeat Simple_repeat 4 95 0 232 313 0 12 chr11 138373805 138373885 -10409587 - L2 LINE L2 -9 3263 3185 2296 125 0 0 chr11 138373941 138374245 -10409227 - AluSg SINE Alu -6 304 1 252 293 13 0 chr11 138374253 138374328 -10409144 + MIR SINE MIR 50 125 -83 1512 152 3 76 chr11 138374473 138374573 -10408899 + AluJo SINE Alu 18 124 -188 2283 94 18 0 chr11 138374573 138374859 -10408613 + AluSx SINE Alu 3 293 -19 1512 152 3 76 chr11 138374859 138374887 -10408585 + AluJo SINE Alu 124 152 -160 2378 95 0 0 chr11 138374887 138375181 -10408291 + AluY SINE Alu 1 294 -17 1512 152 3 76 chr11 138375181 138375197 -10408275 + AluJo SINE Alu 152 168 -144 516 32 0 0 chr11 138375197 138375259 -10408213 + (TA)n Simple_repeat Simple_repeat 2 63 0 1512 152 3 76 chr11 138375259 138375402 -10408070 + AluJo SINE Alu 168 286 -26 4021 46 37 7 chr11 138375960 138376499 -10406973 + L1PA8 LINE L1 5618 6172 0 333 317 15 35 chr11 138376619 138376818 -10406654 + MER117 DNA MER1_type 3 197 0 2517 84 0 3 chr11 138377046 138377356 -10406116 - AluY SINE Alu -2 309 1 2003 142 0 19 chr11 138377555 138377873 -10405599 - AluJb SINE Alu 0 312 1 278 304 32 32 chr11 138380852 138380977 -10402495 - MIR SINE MIR -64 144 20 252 340 136 0 chr11 138382709 138382871 -10400601 - MIR SINE MIR 0 262 79 755 267 94 52 chr11 138383072 138383245 -10400227 - MARNA DNA Mariner -42 544 380 2356 94 7 0 chr11 138383245 138383543 -10399929 + AluSp SINE Alu 1 300 -13 755 267 94 52 chr11 138383543 138383699 -10399773 - MARNA DNA Mariner -206 380 201 189 0 0 0 chr11 138384615 138384636 -10398836 + (A)n Simple_repeat Simple_repeat 1 21 0 1909 152 19 32 chr11 138384714 138385029 -10398443 + AluSx SINE Alu 1 311 -1 489 302 69 6 chr11 138386140 138386299 -10397173 - MIR3 SINE MIR -2 206 38 377 290 71 35 chr11 138386492 138386661 -10396811 + MIR SINE MIR 12 186 -76 2266 232 51 21 chr11 138387849 138388422 -10395050 - MLT1E LTR MaLR 0 593 4 222 271 17 0 chr11 138388467 138388526 -10394946 + (TAA)n Simple_repeat Simple_repeat 2 61 0 201 39 0 0 chr11 138388568 138388594 -10394878 + (TA)n Simple_repeat Simple_repeat 2 27 0 183 80 0 0 chr11 138388618 138388643 -10394829 + (CA)n Simple_repeat Simple_repeat 1 25 0 375 88 0 0 chr11 138388671 138388728 -10394744 - AluSq SINE Alu -3 298 242 1611 106 0 5 chr11 138388728 138388935 -10394537 - AluSq SINE Alu -107 206 1 213 185 56 19 chr11 138388949 138389003 -10394469 - MIR SINE MIR -98 164 109 334 259 110 39 chr11 138389782 138389943 -10393529 - MIR SINE MIR -60 202 22 2334 97 0 10 chr11 138390225 138390534 -10392938 - AluSx SINE Alu 0 312 7 568 291 97 21 chr11 138391126 138391363 -10392109 - MIR SINE MIR -4 258 4 279 299 105 4 chr11 138392028 138392178 -10391294 - MIR SINE MIR -61 147 21 2773 107 0 0 chr11 138392470 138392833 -10390639 + THE1B LTR MaLR 2 364 0 599 326 74 0 chr11 138392910 138393125 -10390347 - MIR SINE MIR -6 256 26 2419 99 0 0 chr11 138393356 138393658 -10389814 - AluSx SINE Alu -10 302 1 1995 63 0 0 chr11 138393771 138394010 -10389462 - AluY SINE Alu 0 311 73 720 279 40 5 chr11 138394153 138394354 -10389118 + MIR3 SINE MIR 1 208 0 2294 173 12 2 chr11 138394435 138394863 -10388609 - L1MA8 LINE L1 -10 6281 5850 210 71 0 0 chr11 138395810 138395838 -10387634 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 238 325 146 33 chr11 138395998 138396149 -10387323 - MIR3 SINE MIR -4 204 37 183 275 121 55 chr11 138396472 138396563 -10386909 - MER5A DNA MER1_type -73 116 20 514 298 120 67 chr11 138397397 138397696 -10385776 + L2 LINE L2 1563 1845 -1469 2351 113 3 0 chr11 138397696 138398005 -10385467 + AluSx SINE Alu 1 310 -2 514 298 120 67 chr11 138398005 138398382 -10385090 + L2 LINE L2 1845 2275 -1039 1659 186 31 10 chr11 138398762 138399053 -10384419 - AluJo SINE Alu -2 310 14 405 84 56 14 chr11 138399127 138399198 -10384274 - L1MB8 LINE L1 -1 6177 6104 370 286 19 9 chr11 138399639 138399744 -10383728 - L2 LINE L2 -7 3265 3160 272 57 0 0 chr11 138399961 138399996 -10383476 - U2 snRNA snRNA -153 35 1 383 316 17 8 chr11 138400219 138400361 -10383111 + MER5A DNA MER1_type 3 156 -33 192 321 36 0 chr11 138400774 138400830 -10382642 + L2 LINE L2 3206 3263 -9 205 260 104 0 chr11 138400944 138401021 -10382451 + MIR3 SINE MIR 79 163 -45 932 169 7 7 chr11 138401142 138401296 -10382176 + FRAM SINE Alu 2 155 -11 2360 99 0 0 chr11 138402912 138403204 -10380268 + AluSc SINE Alu 6 297 -12 203 354 197 0 chr11 138406002 138406149 -10377323 + MIR SINE MIR 73 248 -14 1651 228 30 0 chr11 138406197 138406570 -10376902 + MLT1B LTR MaLR 1 384 -6 190 326 0 0 chr11 138406887 138406930 -10376542 - L3b LINE CR1 -11 1572 1530 * 417 229 167 35 chr11 138406911 138407055 -10376417 - MIR3 SINE MIR -11 197 35 457 267 42 78 chr11 138407166 138407357 -10376115 + MIR SINE MIR 10 183 -65 3560 169 77 37 chr11 138409530 138409879 -10373593 + L1MB8 LINE L1 4872 5206 -972 2213 110 17 0 chr11 138409879 138410171 -10373301 + AluSq SINE Alu 1 297 -16 3560 169 77 37 chr11 138410171 138410709 -10372763 + L1MB8 LINE L1 5206 5815 -363 2194 134 0 0 chr11 138410709 138411015 -10372457 + AluSx SINE Alu 1 306 -6 3560 169 77 37 chr11 138411015 138411227 -10372245 + L1MB8 LINE L1 5815 6017 -161 191 354 73 0 chr11 138411233 138411315 -10372157 + L2 LINE L2 2587 2674 -640 2443 93 3 3 chr11 138411576 138411889 -10371583 + AluSq SINE Alu 1 313 0 1133 259 78 84 chr11 138412208 138412898 -10370574 + MER21B LTR ERV1 29 714 -149 213 320 300 16 chr11 138413328 138413578 -10369894 - L2 LINE L2 -781 2533 2213 244 174 0 0 chr11 138414078 138414124 -10369348 + HAL1 LINE L1 2462 2507 0 2183 122 7 0 chr11 138414335 138414630 -10368842 + AluSx SINE Alu 1 297 -15 252 309 126 51 chr11 138414941 138414969 -10368503 + MIR SINE MIR 20 44 -218 2232 118 0 0 chr11 138414969 138415294 -10368178 - AluSx SINE Alu 0 326 2 252 309 126 51 chr11 138415294 138415439 -10368033 + MIR SINE MIR 44 207 -55 470 261 174 29 chr11 138415719 138415926 -10367546 - MIR SINE MIR -14 248 12 1078 149 28 15 chr11 138416254 138416583 -10366889 - MLT2A2 LTR ERVL 0 453 219 3104 233 116 128 chr11 138416636 138417447 -10366025 + HAL1 LINE L1 114 934 -1573 1965 151 14 3 chr11 138417447 138417738 -10365734 + AluJb SINE Alu 1 294 -18 3104 233 116 128 chr11 138417738 138417968 -10365504 + HAL1 LINE L1 934 1165 -1342 1796 182 3 10 chr11 138417968 138418270 -10365202 + AluJo SINE Alu 1 300 -12 3104 233 116 128 chr11 138418270 138418286 -10365186 + HAL1 LINE L1 1165 1180 -1327 905 135 0 30 chr11 138418286 138418419 -10365053 + FLAM_C SINE Alu 1 129 -14 3104 233 116 128 chr11 138418419 138419353 -10364119 + HAL1 LINE L1 1180 2124 -383 2493 50 7 0 chr11 138419353 138419650 -10363822 - AluY SINE Alu -12 299 1 3104 233 116 128 chr11 138419650 138419801 -10363671 + HAL1 LINE L1 2124 2275 -232 1920 103 55 11 chr11 138419801 138420126 -10363346 + AluSx SINE Alu 1 337 0 3104 233 116 128 chr11 138420126 138420267 -10363205 + HAL1 LINE L1 2275 2505 -2 217 211 0 0 chr11 138420283 138420321 -10363151 + polypurine Low_complexity Low_complexity 3 40 0 188 244 171 0 chr11 138420350 138420432 -10363040 + MIR SINE MIR 81 176 -86 2208 103 3 17 chr11 138420921 138421222 -10362250 + AluSx SINE Alu 1 297 -15 190 319 159 49 chr11 138421238 138421401 -10362071 + MIR SINE MIR 20 200 -62 1864 163 7 3 chr11 138421436 138421725 -10361747 + AluJo SINE Alu 1 290 -22 2056 173 88 38 chr11 138421886 138422412 -10361060 - MER92B LTR ERV1 0 636 85 21 36 0 0 chr11 138422652 138422680 -10360792 + AT_rich Low_complexity Low_complexity 1 28 0 1188 146 14 42 chr11 138423162 138423375 -10360097 - AluJo SINE Alu -6 306 100 496 282 98 0 chr11 138423391 138423554 -10359918 - MIR SINE MIR -14 248 70 2542 89 0 0 chr11 138424055 138424368 -10359104 - AluSp SINE Alu 0 313 1 24 32 0 0 chr11 138424551 138424582 -10358890 + AT_rich Low_complexity Low_complexity 1 31 0 617 141 0 0 chr11 138424600 138424699 -10358773 - AluSg/x SINE Alu -9 300 202 1953 227 50 7 chr11 138424742 138425204 -10358268 + LTR16C LTR ERVL 8 489 -2 2182 102 3 10 chr11 138426287 138426581 -10356891 + AluSc SINE Alu 1 292 -17 249 33 0 0 chr11 138427696 138427726 -10355746 + (TG)n Simple_repeat Simple_repeat 2 31 0 225 119 0 0 chr11 138427727 138427769 -10355703 + (GA)n Simple_repeat Simple_repeat 2 43 0 430 236 88 10 chr11 138429220 138429365 -10354107 + MIR SINE MIR 70 221 -41 863 170 50 11 chr11 138429484 138429666 -10353806 + MER20 DNA MER1_type 31 219 0 1583 152 17 45 chr11 138429806 138430129 -10353343 + AluJo SINE Alu 1 315 0 671 215 49 14 chr11 138430455 138430599 -10352873 - MIR SINE MIR -74 188 40 254 189 389 0 chr11 138431847 138431937 -10351535 - MIR SINE MIR -17 245 121 2507 80 0 0 chr11 138432071 138432382 -10351090 - AluSx SINE Alu -1 311 1 997 106 15 0 chr11 138432449 138432581 -10350891 - AluSq/x SINE Alu -163 150 17 1001 116 0 0 chr11 138432581 138432719 -10350753 + AluSg/x SINE Alu 161 298 -14 2349 81 0 10 chr11 138432893 138433190 -10350282 + AluY SINE Alu 1 294 -17 192 244 49 0 chr11 138433332 138433373 -10350099 + MIR SINE MIR 209 251 -11 2311 110 3 3 chr11 138434011 138434321 -10349151 + AluSx SINE Alu 1 310 -2 2167 88 0 70 chr11 138435151 138435479 -10347993 - AluSq SINE Alu -7 306 2 1716 222 43 3 chr11 138435697 138436048 -10347424 - MLT1A1 LTR MaLR 0 365 1 2324 119 3 0 chr11 138436448 138436759 -10346713 - AluSx SINE Alu 0 312 1 756 142 0 85 chr11 138436814 138436955 -10346517 - FLAM_C SINE Alu -2 141 13 451 248 78 50 chr11 138437430 138437536 -10345936 - MIR SINE MIR 0 262 148 2022 164 0 3 chr11 138437536 138437834 -10345638 - AluJo SINE Alu -7 305 9 451 248 78 50 chr11 138437834 138437921 -10345551 - MIR SINE MIR -114 148 65 282 284 86 9 chr11 138437996 138438112 -10345360 - MIR SINE MIR -16 246 122 191 291 8 128 chr11 138438335 138438452 -10345020 - MIR3 SINE MIR -103 105 3 253 262 0 16 chr11 138439885 138439946 -10343526 - L2 LINE L2 -18 3254 3195 1485 182 89 0 chr11 138440064 138440333 -10343139 - AluJb SINE Alu -19 293 1 1230 157 0 0 chr11 138440405 138440583 -10342889 + AluJb SINE Alu 135 312 0 1147 229 110 64 chr11 138440598 138441052 -10342420 - L1MC4a LINE L1 -1815 5993 5519 191 273 36 0 chr11 138441060 138441115 -10342357 - MIR SINE MIR -108 154 98 826 154 0 22 chr11 138441586 138441722 -10341750 - FLAM_C SINE Alu 0 133 1 1727 181 0 3 chr11 138441892 138442191 -10341281 - AluJb SINE Alu -14 298 1 2700 13 0 0 chr11 138442351 138442656 -10340816 - AluYb8 SINE Alu -13 305 1 527 281 57 48 chr11 138444054 138444264 -10339208 + MIR SINE MIR 1 212 -50 430 277 17 0 chr11 138444274 138444393 -10339079 - MIR SINE MIR -2 260 140 245 296 111 0 chr11 138444433 138444514 -10338958 - MIR SINE MIR -119 143 54 2242 87 0 0 chr11 138444564 138444862 -10338610 - AluY SINE Alu -13 298 1 266 324 73 7 chr11 138445662 138445798 -10337674 + L2 LINE L2 2119 2263 -1051 1530 188 33 30 chr11 138445833 138446137 -10337335 - MLT1A1 LTR MaLR 0 365 61 2086 79 3 73 chr11 138447119 138447434 -10336038 + AluSx SINE Alu 1 293 -19 267 161 0 86 chr11 138448154 138448247 -10335225 + (CGGGG)n Simple_repeat Simple_repeat 5 89 0 21 82 0 0 chr11 138448667 138448716 -10334756 + GC_rich Low_complexity Low_complexity 1 49 0 25 0 0 0 chr11 138448908 138448933 -10334539 + GC_rich Low_complexity Low_complexity 1 25 0 506 276 103 11 chr11 138453539 138453724 -10329748 + MIR SINE MIR 61 262 0 848 204 52 90 chr11 138453857 138454215 -10329257 - L1ME3 LINE L1 0 6162 5840 477 346 70 9 chr11 138455315 138455529 -10327943 + L3 LINE CR1 1344 1570 -7 246 271 50 111 chr11 138456402 138456601 -10326871 + L2 LINE L2 2625 2811 -503 519 135 45 0 chr11 138456885 138456974 -10326498 - MER5A DNA MER1_type -83 106 14 26 50 0 0 chr11 138457194 138457234 -10326238 + AT_rich Low_complexity Low_complexity 1 40 0 956 136 101 70 chr11 138458531 138458730 -10324742 + MER2 DNA MER2_type 1 205 -140 2287 103 0 0 chr11 138458731 138459043 -10324429 - AluSx SINE Alu 0 312 1 284 281 12 12 chr11 138459053 138459135 -10324337 + MER2 DNA MER2_type 264 345 0 21 0 0 0 chr11 138459340 138459361 -10324111 + AT_rich Low_complexity Low_complexity 1 21 0 311 0 26 0 chr11 138459454 138459493 -10323979 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 2287 82 13 3 chr11 138459635 138459940 -10323532 + AluSq SINE Alu 1 308 -5 336 24 0 0 chr11 138461047 138461088 -10322384 + (TG)n Simple_repeat Simple_repeat 2 42 0 2132 101 3 0 chr11 138462593 138462880 -10320592 + AluSp SINE Alu 13 300 -13 2084 105 0 20 chr11 138463278 138463582 -10319890 - AluSx SINE Alu -7 305 8 339 311 145 53 chr11 138463781 138464009 -10319463 + MIR SINE MIR 2 250 -12 26 0 0 0 chr11 138465057 138465083 -10318389 + AT_rich Low_complexity Low_complexity 1 26 0 2137 114 3 0 chr11 138465588 138465895 -10317577 - AluSp SINE Alu -5 308 1 27 62 0 0 chr11 138465946 138465994 -10317478 + AT_rich Low_complexity Low_complexity 1 48 0 26 0 0 0 chr11 138466066 138466092 -10317380 + AT_rich Low_complexity Low_complexity 1 26 0 2162 67 0 11 chr11 138466258 138466540 -10316932 + AluSc SINE Alu 1 279 -30 3656 145 47 19 chr11 138466556 138467239 -10316233 - L1MA3 LINE L1 0 6305 5604 357 260 130 0 chr11 138467915 138468038 -10315434 + MIR SINE MIR 47 185 -77 3333 141 103 16 chr11 138468069 138468644 -10314828 - MER51A LTR ERV1 -9 625 1 1834 153 0 6 chr11 138468661 138468974 -10314498 + AluSx SINE Alu 1 311 -1 2319 71 3 0 chr11 138469400 138469694 -10313778 + AluSp SINE Alu 1 295 -18 2264 67 7 10 chr11 138470377 138470675 -10312797 - AluSg SINE Alu -13 297 1 288 0 0 0 chr11 138470737 138470769 -10312703 + (T)n Simple_repeat Simple_repeat 1 32 0 2084 97 7 0 chr11 138470888 138471177 -10312295 - AluSg SINE Alu -19 291 1 647 293 46 100 chr11 138471208 138471889 -10311583 + L2 LINE L2 2600 3252 -20 2059 129 3 3 chr11 138471890 138472193 -10311279 - AluSx SINE Alu -9 303 1 1292 143 10 5 chr11 138472231 138472440 -10311032 - AluSq SINE Alu -25 288 79 599 244 57 43 chr11 138472456 138472665 -10310807 - MIR SINE MIR 0 262 51 2712 125 7 38 chr11 138473476 138473842 -10309630 - L1PB2 LINE L1 -6 6145 5769 2188 104 3 0 chr11 138473842 138474149 -10309323 - AluSp SINE Alu -5 308 1 2712 125 7 38 chr11 138474149 138474200 -10309272 - L1PB2 LINE L1 -382 5769 5740 865 167 0 0 chr11 138474200 138474326 -10309146 - FLAM_C SINE Alu -7 126 1 2712 125 7 38 chr11 138474326 138474356 -10309116 - L1PB2 LINE L1 -411 5740 5711 354 291 177 11 chr11 138474860 138475035 -10308437 - MIR SINE MIR -55 207 4 285 51 0 0 chr11 138476595 138476634 -10306838 + (GA)n Simple_repeat Simple_repeat 1 39 0 205 371 120 0 chr11 138478333 138478500 -10304972 - MIR SINE MIR -20 242 56 1530 182 0 0 chr11 138480956 138481203 -10302269 + MLT1A1 LTR MaLR 1 247 -118 444 290 199 18 chr11 138482572 138482793 -10300679 - MIR SINE MIR 0 262 2 1943 116 9 61 chr11 138482811 138483140 -10300332 - AluSx SINE Alu 0 312 1 1732 166 115 53 chr11 138483148 138483339 -10300133 - Charlie4a DNA MER1_type -1457 504 326 2273 100 3 0 chr11 138483339 138483648 -10299824 + AluSq SINE Alu 2 311 -2 1732 166 115 53 chr11 138483648 138483747 -10299725 - Charlie4a DNA MER1_type -1635 326 235 5401 63 15 1 chr11 138483747 138484431 -10299041 - L1PA7 LINE L1 0 6154 5462 1732 166 115 53 chr11 138484431 138484608 -10298864 - Charlie4a DNA MER1_type -1726 235 7 299 146 0 0 chr11 138484783 138484831 -10298641 + MER53 DNA DNA 3 50 -139 248 219 232 12 chr11 138484797 138484879 -10298593 - MER53 DNA DNA -7 182 83 * 1358 229 149 5 chr11 138484880 138485308 -10298164 - MLT1E2 LTR MaLR 0 626 137 191 357 18 0 chr11 138485612 138485668 -10297804 - L2 LINE L2 -94 3178 3122 1688 166 24 0 chr11 138485690 138485985 -10297487 + AluJb SINE Alu 1 302 -10 291 289 234 5 chr11 138486545 138486742 -10296730 - L2 LINE L2 -391 2923 2682 335 304 78 60 chr11 138487951 138488035 -10295437 + L2 LINE L2 2977 3058 -214 1137 238 104 25 chr11 138488035 138488514 -10294958 - LTR33 LTR ERVL -4 517 1 335 304 78 60 chr11 138488514 138488646 -10294826 + L2 LINE L2 3058 3197 -75 252 347 0 0 chr11 138489241 138489316 -10294156 + L2 LINE L2 2713 2787 -527 220 315 0 0 chr11 138489406 138489460 -10294012 + L2 LINE L2 3010 3063 -250 254 300 150 0 chr11 138489567 138489667 -10293805 + L2 LINE L2 3197 3311 -2 551 242 31 0 chr11 138489977 138490105 -10293367 - MIR SINE MIR -122 140 9 227 340 39 10 chr11 138491409 138491512 -10291960 - MIR SINE MIR -50 212 107 246 277 90 69 chr11 138492065 138492253 -10291219 - MLT1K LTR MaLR -243 345 154 384 319 36 6 chr11 138492370 138492536 -10290936 + L1MC4a LINE L1 5696 5866 -1942 2177 127 3 3 chr11 138492568 138492876 -10290596 + AluSg SINE Alu 3 310 0 252 102 0 20 chr11 138494183 138494232 -10289240 - L1MA7 LINE L1 -1 6290 6243 995 104 7 0 chr11 138494797 138494932 -10288540 + AluSq/x SINE Alu 1 136 -176 2560 69 0 0 chr11 138494932 138495237 -10288235 + AluY SINE Alu 1 305 -6 2647 48 0 0 chr11 138495364 138495675 -10287797 - AluY SINE Alu 0 311 1 428 301 16 0 chr11 138495807 138495930 -10287542 - L2 LINE L2 -1 3312 3188 620 114 34 0 chr11 138495952 138496040 -10287432 - L1MC1 LINE L1 0 6333 6243 186 43 0 0 chr11 138496099 138496122 -10287350 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2354 89 0 0 chr11 138497535 138497839 -10285633 - AluSq SINE Alu -9 304 1 215 231 56 65 chr11 138498624 138498732 -10284740 + L2 LINE L2 3207 3313 0 1946 142 7 10 chr11 138498809 138499112 -10284360 + AluSx SINE Alu 1 302 -10 1796 159 3 7 chr11 138499219 138499509 -10283963 + AluJo SINE Alu 1 289 -23 297 317 164 28 chr11 138499679 138500032 -10283440 - MARNA DNA Mariner -11 575 175 216 205 0 0 chr11 138500127 138500166 -10283306 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 181 360 0 22 chr11 138503003 138503092 -10280380 + L2 LINE L2 2400 2486 -828 1902 132 0 7 chr11 138503203 138503484 -10279988 - AluJo SINE Alu -33 279 1 276 339 216 15 chr11 138503556 138503889 -10279583 + L2 LINE L2 2578 2977 -337 477 298 32 13 chr11 138504921 138505079 -10278393 + L2 LINE L2 3151 3311 -2 795 239 99 104 chr11 138507190 138507462 -10276010 + L1ME4a LINE L1 5561 5833 -288 351 0 0 0 chr11 138507462 138507501 -10275971 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 795 239 99 104 chr11 138507501 138507546 -10275926 + L1ME4a LINE L1 5833 5877 -244 2108 123 10 0 chr11 138507546 138507838 -10275634 + AluSx SINE Alu 1 295 -17 795 239 99 104 chr11 138507838 138508066 -10275406 + L1ME4a LINE L1 5877 6104 -17 21 0 0 0 chr11 138508500 138508521 -10274951 + AT_rich Low_complexity Low_complexity 1 21 0 258 196 0 20 chr11 138510186 138510237 -10273235 + L2 LINE L2 3213 3262 -10 269 275 14 0 chr11 138510699 138510768 -10272704 + L2 LINE L2 3231 3300 -13 357 269 35 28 chr11 138510768 138510913 -10272559 - L1MC/D LINE L1 -2202 5606 5461 2168 292 114 33 chr11 138510966 138511253 -10272219 + L2 LINE L2 1701 1963 -1351 2262 118 0 9 chr11 138511253 138511568 -10271904 - AluSx SINE Alu 0 312 1 2168 292 114 33 chr11 138511568 138512378 -10271094 + L2 LINE L2 1963 2887 -427 589 170 52 37 chr11 138512448 138512583 -10270889 + MIR SINE MIR 126 262 0 281 212 47 24 chr11 138513474 138513559 -10269913 + MIR SINE MIR 32 118 -90 222 118 0 0 chr11 138514353 138514387 -10269085 + (T)n Simple_repeat Simple_repeat 1 34 0 41 21 0 0 chr11 138514392 138514440 -10269032 + GC_rich Low_complexity Low_complexity 1 48 0 1962 155 7 0 chr11 138514635 138514945 -10268527 - AluJb SINE Alu 0 312 1 239 235 37 81 chr11 138515588 138515724 -10267748 + MIR3 SINE MIR 15 144 -64 866 129 7 34 chr11 138516688 138516835 -10266637 - AluJb SINE Alu -2 310 168 655 266 45 90 chr11 138517304 138517661 -10265811 + L2 LINE L2 2973 3313 0 1862 158 0 7 chr11 138517906 138518191 -10265281 + AluJo SINE Alu 10 292 -20 2137 130 0 0 chr11 138518567 138518859 -10264613 + AluSx SINE Alu 1 292 -20 1715 158 54 0 chr11 138520052 138520330 -10263142 + AluJb SINE Alu 1 293 -19 1624 258 83 44 chr11 138521890 138522615 -10260857 - L1MC4a LINE L1 -747 5399 5221 * 2160 282 120 37 chr11 138522614 138524060 -10259412 + L1ME LINE L1 2754 4330 -1816 1957 119 3 33 chr11 138524060 138524363 -10259109 + AluSx SINE Alu 1 294 -18 2160 282 120 37 chr11 138524363 138524416 -10259056 + L1ME LINE L1 4330 4377 -1769 783 290 111 24 chr11 138524527 138525379 -10258093 + L1ME LINE L1 4574 5499 -667 461 284 66 51 chr11 138527122 138527319 -10256153 + MER115 DNA AcHobo 1 200 -493 822 256 23 6 chr11 138527603 138527838 -10255634 + MIR SINE MIR 20 258 -4 191 297 16 0 chr11 138528175 138528239 -10255233 - MIR3 SINE MIR -43 165 101 186 229 62 0 chr11 138528854 138528902 -10254570 + MIR SINE MIR 156 206 -56 492 261 72 0 chr11 138529800 138529938 -10253534 + MIR SINE MIR 100 247 -15 1980 109 0 4 chr11 138530116 138530383 -10253089 - AluJb SINE Alu -46 266 1 1953 153 3 7 chr11 138531428 138531723 -10251749 - AluSx SINE Alu -18 294 1 21 82 0 0 chr11 138532212 138532261 -10251211 + AT_rich Low_complexity Low_complexity 1 49 0 259 280 76 30 chr11 138532325 138532457 -10251015 - MIR SINE MIR -69 193 56 2241 102 0 0 chr11 138532910 138533203 -10250269 - AluY SINE Alu -18 293 1 940 273 127 23 chr11 138533478 138534012 -10249460 - L2 LINE L2 -4 3309 2724 1558 157 19 15 chr11 138535281 138535548 -10247924 + AluJb SINE Alu 34 301 -11 180 315 137 0 chr11 138536153 138536226 -10247246 - L2 LINE L2 -40 3273 3191 1859 156 0 0 chr11 138536241 138536517 -10246955 + AluJo SINE Alu 7 282 -30 186 256 146 12 chr11 138537108 138537190 -10246282 - L2 LINE L2 -898 2416 2324 309 285 67 48 chr11 138537213 138537378 -10246094 - MIR SINE MIR -69 193 26 2550 158 55 0 chr11 138538105 138538509 -10244963 - MSTB LTR MaLR 0 426 1 1524 139 151 16 chr11 138539594 138539845 -10243627 - AluJo SINE Alu -16 286 2 2410 71 0 3 chr11 138540016 138540310 -10243162 - AluSx SINE Alu -11 301 9 341 313 34 6 chr11 138540352 138540528 -10242944 - L1ME4a LINE L1 -249 5872 5692 405 0 0 0 chr11 138540528 138540573 -10242899 + (TG)n Simple_repeat Simple_repeat 2 46 0 295 371 23 0 chr11 138541407 138541539 -10241933 - MER117 DNA MER1_type -57 140 6 215 156 22 0 chr11 138541628 138541673 -10241799 + T-rich Low_complexity Low_complexity 3 48 0 192 368 177 32 chr11 138542612 138542922 -10240550 + L3 LINE CR1 814 1168 -409 261 294 147 43 chr11 138542937 138543121 -10240351 + L2 LINE L2 2761 2963 -351 276 185 0 0 chr11 138543309 138543363 -10240109 + (TG)n Simple_repeat Simple_repeat 1 54 0 217 179 141 26 chr11 138543408 138543486 -10239986 + L2 LINE L2 3180 3266 -47 670 306 219 3 chr11 138543545 138543856 -10239616 + L3 LINE CR1 1197 1574 -3 315 157 0 0 chr11 138544075 138544126 -10239346 + L2 LINE L2 3263 3313 0 645 248 64 50 chr11 138544158 138544376 -10239096 + L1ME3A LINE L1 5943 6163 -7 633 46 0 81 chr11 138544408 138544495 -10238977 + MADE1 DNA Mariner 1 80 0 2121 134 0 0 chr11 138547180 138547479 -10235993 - AluSx SINE Alu -11 301 3 368 161 0 0 chr11 138547682 138547744 -10235728 - FLAM_A SINE Alu 0 133 72 239 265 31 20 chr11 138548111 138548209 -10235263 - MLT1L LTR MaLR -10 605 507 875 122 0 0 chr11 138548232 138548355 -10235117 + AluJb SINE Alu 174 296 -16 187 318 27 81 chr11 138548908 138549056 -10234416 - L2 LINE L2 -1 3312 3173 265 333 43 0 chr11 138549723 138549816 -10233656 - L3 LINE CR1 -17 1560 1464 2324 88 0 3 chr11 138549954 138550250 -10233222 - AluY SINE Alu -16 295 1 5864 65 53 3 chr11 138550290 138551059 -10232413 - L1PA6 LINE L1 -1 6153 5346 500 251 105 49 chr11 138551114 138551254 -10232218 - MIR SINE MIR 0 262 101 2029 132 3 19 chr11 138551254 138551564 -10231908 + AluSx SINE Alu 1 305 -7 500 251 105 49 chr11 138551564 138551670 -10231802 - MIR SINE MIR -161 101 2 2114 127 0 0 chr11 138552019 138552319 -10231153 - AluSx SINE Alu -12 300 1 464 363 28 33 chr11 138554071 138554286 -10229186 - L2 LINE L2 -2 3270 3057 2202 96 36 3 chr11 138554460 138554763 -10228709 + AluSq SINE Alu 1 313 0 267 31 0 0 chr11 138554959 138554991 -10228481 + (A)n Simple_repeat Simple_repeat 1 32 0 522 161 0 0 chr11 138555512 138555605 -10227867 + (TG)n Simple_repeat Simple_repeat 2 94 0 801 228 114 49 chr11 138556233 138556540 -10226932 - MER102a DNA MER1_type -3 327 1 248 308 116 27 chr11 138560029 138560175 -10223297 + MIR3 SINE MIR 30 188 -20 320 93 0 19 chr11 138560309 138560363 -10223109 + (TG)n Simple_repeat Simple_repeat 2 54 0 229 167 146 0 chr11 138561048 138561096 -10222376 - L2 LINE L2 -12 3260 3206 986 159 30 90 chr11 138561175 138561376 -10222096 - MER5A DNA MER1_type 0 189 1 24 0 0 0 chr11 138561521 138561545 -10221927 + AT_rich Low_complexity Low_complexity 1 24 0 262 215 0 92 chr11 138561550 138561615 -10221857 - L2 LINE L2 -5 3267 3209 21 0 0 0 chr11 138561700 138561721 -10221751 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr11 138562324 138562349 -10221123 + AT_rich Low_complexity Low_complexity 1 25 0 198 0 0 0 chr11 138562612 138562634 -10220838 + (A)n Simple_repeat Simple_repeat 1 22 0 2351 78 3 0 chr11 138563511 138563793 -10219679 + AluSp SINE Alu 3 285 -28 962 184 0 18 chr11 138564785 138564953 -10218519 + AluJ SINE Alu 1 165 -147 616 168 84 0 chr11 138565030 138565137 -10218335 + AluJ SINE Alu 161 276 -36 749 299 77 49 chr11 138565561 138566553 -10216919 - L1MDa LINE L1 -4387 2334 1253 2250 79 0 7 chr11 138566654 138566944 -10216528 - AluSp SINE Alu -14 299 12 199 388 38 0 chr11 138567147 138567227 -10216245 + L2 LINE L2 3185 3267 -5 437 249 220 11 chr11 138568226 138568403 -10215069 + L1ME LINE L1 2 215 -5855 1239 245 35 11 chr11 138568504 138568880 -10214592 + L1ME LINE L1 631 1015 -5055 1988 114 48 7 chr11 138571010 138571299 -10212173 - AluSx SINE Alu -11 301 1 243 23 68 0 chr11 138571881 138571925 -10211547 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2511 163 21 6 chr11 138572566 138573104 -10210368 + HUERS-P3 LTR ERV1 487 1115 -7804 919 78 85 20 chr11 138573114 138573267 -10210205 - MSTB2 LTR MaLR -31 426 264 320 191 0 15 chr11 138573776 138573844 -10209628 + L1M4 LINE L1 4280 4346 -1800 22 0 0 0 chr11 138573867 138573889 -10209583 + AT_rich Low_complexity Low_complexity 1 22 0 328 221 0 0 chr11 138573889 138573966 -10209506 + L1M4 LINE L1 5153 5229 -917 56 29 0 0 chr11 138573999 138574069 -10209403 + AT_rich Low_complexity Low_complexity 1 70 0 1189 119 24 0 chr11 138575485 138575653 -10207819 - AluSg/x SINE Alu -12 300 129 2006 108 20 7 chr11 138575710 138576007 -10207465 + AluSx SINE Alu 1 301 -11 2226 98 7 0 chr11 138576493 138576789 -10206683 + AluSq SINE Alu 1 298 -15 496 318 209 21 chr11 138576862 138577132 -10206340 - L2 LINE L2 -261 3052 2834 2334 95 3 3 chr11 138577132 138577436 -10206036 - AluSg SINE Alu -6 304 1 496 318 209 21 chr11 138577436 138577587 -10205885 - L2 LINE L2 -479 2834 2553 207 0 0 0 chr11 138577645 138577668 -10205804 + (A)n Simple_repeat Simple_repeat 1 23 0 1980 145 3 6 chr11 138578231 138578542 -10204930 - AluSx SINE Alu -2 310 1 2256 73 0 0 chr11 138579271 138579574 -10203898 - AluY SINE Alu 0 312 10 2403 77 3 3 chr11 138580212 138580512 -10202960 + AluSg SINE Alu 1 300 -10 2318 82 3 0 chr11 138581389 138581671 -10201801 + AluSp SINE Alu 3 285 -28 962 184 0 18 chr11 138582663 138582831 -10200641 + AluJ SINE Alu 1 165 -147 616 168 84 0 chr11 138582908 138583015 -10200457 + AluJ SINE Alu 161 276 -36 716 287 81 56 chr11 138583439 138584437 -10199035 - L1MDa LINE L1 -4387 2334 1253 2241 80 0 7 chr11 138584538 138584827 -10198645 - AluSp SINE Alu -15 298 12 2084 131 0 13 chr11 138585460 138585766 -10197706 + AluSx SINE Alu 1 302 -10 199 388 38 0 chr11 138586319 138586399 -10197073 + L2 LINE L2 3185 3267 -5 437 249 220 11 chr11 138587398 138587575 -10195897 + L1ME LINE L1 2 215 -5855 1224 247 35 11 chr11 138587676 138588052 -10195420 + L1ME LINE L1 631 1015 -5055 1988 114 48 7 chr11 138590181 138590470 -10193002 - AluSx SINE Alu -11 301 1 243 23 68 0 chr11 138591051 138591095 -10192377 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 21 36 0 0 chr11 138592031 138592059 -10191413 + AT_rich Low_complexity Low_complexity 1 28 0 264 224 0 0 chr11 138592075 138592142 -10191330 + (TA)n Simple_repeat Simple_repeat 1 67 0 347 285 55 13 chr11 138592276 138592471 -10191001 - MIR SINE MIR -7 255 2 185 254 73 0 chr11 138597643 138597698 -10185774 + L2 LINE L2 3208 3266 -6 1282 145 124 14 chr11 138598123 138598413 -10185059 + MER33 DNA MER1_type 3 324 0 256 164 0 82 chr11 138598413 138598467 -10185005 - MIR3 SINE MIR -48 160 110 228 241 0 0 chr11 138598931 138598989 -10184483 + CT-rich Low_complexity Low_complexity 3 60 0 * 235 253 25 0 chr11 138598947 138599026 -10184446 + (TTCA)n Simple_repeat Simple_repeat 4 84 0 222 261 0 62 chr11 138600180 138600245 -10183227 + C-rich Low_complexity Low_complexity 2 62 0 906 219 66 16 chr11 138601431 138601673 -10181799 - MER33 DNA MER1_type -67 257 4 363 179 8 128 chr11 138603288 138603405 -10180067 + MER5A DNA MER1_type 63 165 -24 201 271 29 43 chr11 138603349 138603419 -10180053 - MER5A DNA MER1_type -101 88 20 * 2237 93 7 0 chr11 138603856 138604158 -10179314 + AluSx SINE Alu 1 304 -8 368 302 209 6 chr11 138604164 138604346 -10179126 + L2 LINE L2 2537 2755 -559 230 214 0 0 chr11 138604389 138604431 -10179041 + L2 LINE L2 3224 3265 -7 237 297 44 11 chr11 138604943 138605034 -10178438 - L3 LINE CR1 -2 1575 1482 250 266 53 64 chr11 138605118 138605212 -10178260 + MIR SINE MIR 99 191 -71 263 222 242 10 chr11 138605225 138605324 -10178148 + L1ME3A LINE L1 6012 6133 -37 180 0 0 0 chr11 138605366 138605386 -10178086 + (TTCA)n Simple_repeat Simple_repeat 4 23 0 1563 174 49 88 chr11 138606352 138606783 -10176689 - MLT2D LTR ERVL 0 414 1 211 234 94 0 chr11 138607012 138607076 -10176396 + MIR SINE MIR 74 143 -119 268 313 57 51 chr11 138607760 138607936 -10175536 + MIR SINE MIR 80 256 -6 265 278 105 31 chr11 138607946 138608108 -10175364 - L3 LINE CR1 -200 1377 1204 230 206 44 44 chr11 138608745 138608813 -10174659 - L3 LINE CR1 -774 803 736 394 294 78 33 chr11 138609471 138609624 -10173848 + MIR SINE MIR 4 163 -45 2060 122 0 0 chr11 138609630 138609926 -10173546 + AluSx SINE Alu 1 296 -16 1304 169 60 115 chr11 138610463 138610847 -10172625 - MLT1A1 LTR MaLR -2 363 1 1334 237 171 14 chr11 138611658 138612309 -10171163 - LTR50 LTR ERVL 0 795 14 381 341 77 60 chr11 138612601 138613015 -10170457 + L1 LINE L1 4742 5162 -984 1852 96 0 0 chr11 138613031 138613281 -10170191 + AluSg SINE Alu 58 307 -3 22 0 0 0 chr11 138613282 138613304 -10170168 + GC_rich Low_complexity Low_complexity 1 22 0 192 156 0 0 chr11 138613488 138613520 -10169952 - MIR SINE MIR -8 254 223 24 0 0 0 chr11 138613904 138613928 -10169544 + AT_rich Low_complexity Low_complexity 1 24 0 453 355 113 18 chr11 138614910 138615344 -10168128 + L2 LINE L2 2382 2856 -458 181 386 26 52 chr11 138615382 138615535 -10167937 + L2 LINE L2 2919 3067 -205 322 273 0 2 chr11 138615549 138615686 -10167786 + MER58 DNA MER1_type 57 2420 0 902 137 13 7 chr11 138617472 138617625 -10165847 - AluSg/x SINE Alu -11 299 146 406 270 162 29 chr11 138619667 138619871 -10163601 + L1MC4a LINE L1 4994 5224 -922 709 278 144 41 chr11 138619941 138620531 -10162941 + L1MC4a LINE L1 5283 5933 -1875 1849 113 46 7 chr11 138620828 138621110 -10162362 + AluSx SINE Alu 1 293 -19 1009 212 93 18 chr11 138621221 138621447 -10162025 + MIR SINE MIR 15 257 -5 2479 39 7 3 chr11 138623153 138623463 -10160009 + AluY SINE Alu 1 311 0 1350 144 49 66 chr11 138624737 138625042 -10158430 + AluJo SINE Alu 1 300 -12 31 0 0 0 chr11 138626610 138626641 -10156831 + GC_rich Low_complexity Low_complexity 1 31 0 310 226 47 0 chr11 138626662 138626778 -10156694 + (CCGCT)n Simple_repeat Simple_repeat 1 121 0 1150 124 28 0 chr11 138628746 138628923 -10154549 - AluSg/x SINE Alu -14 298 117 1767 118 17 14 chr11 138628969 138629266 -10154206 + AluSx SINE Alu 1 298 -14 2488 38 0 0 chr11 138629752 138630045 -10153427 + AluY SINE Alu 1 293 -18 439 279 124 26 chr11 138631078 138631311 -10152161 + MIR SINE MIR 2 257 -5 239 289 66 0 chr11 138631313 138631389 -10152083 + MIR SINE MIR 171 251 -11 319 273 58 29 chr11 138631404 138631543 -10151929 - MIR3 SINE MIR -34 174 32 2229 151 47 63 chr11 138632950 138633459 -10150013 + MLT1D LTR MaLR 5 505 0 2232 119 76 17 chr11 138633785 138634129 -10149343 - THE1B LTR MaLR 0 364 1 260 324 7 15 chr11 138634253 138634389 -10149083 - L1P LINE L1 -1135 5011 4877 2226 268 42 42 chr11 138634450 138635170 -10148302 - MER21B LTR ERV1 -51 812 93 422 192 14 0 chr11 138635264 138635337 -10148135 - MER21B LTR ERV1 -774 89 16 2489 144 28 23 chr11 138635337 138635768 -10147704 - Tigger2a DNA MER2_type 0 434 2 2197 71 3 0 chr11 138635857 138636170 -10147302 + AluY SINE Alu 1 314 0 255 212 30 40 chr11 138636176 138636204 -10147268 - L1 LINE L1 -1326 4820 4793 1875 220 6 3 chr11 138636204 138636568 -10146904 + MLT1A1 LTR MaLR 1 365 0 255 212 30 40 chr11 138636568 138636638 -10146834 - L1 LINE L1 -1353 4793 4723 589 207 96 82 chr11 138636911 138637149 -10146323 + LTR33A LTR ERVL 240 484 -39 2883 131 16 47 chr11 138637149 138637285 -10146187 - L1PB3 LINE L1 0 6154 6015 2071 115 13 16 chr11 138637285 138637598 -10145874 - AluSx SINE Alu 0 312 1 2883 131 16 47 chr11 138637598 138637971 -10145501 - L1PB3 LINE L1 -139 6015 5661 589 207 96 82 chr11 138637971 138638012 -10145460 + LTR33A LTR ERVL 484 523 0 498 312 50 32 chr11 138638145 138638363 -10145109 - L1 LINE L1 -1617 4529 4308 18788 175 22 37 chr11 138638372 138641079 -10142393 + L1P3 LINE L1 7 2753 -3708 2416 121 36 8 chr11 138641079 138641443 -10142029 - THE1C LTR MaLR 0 375 2 18788 175 22 37 chr11 138641443 138641771 -10141701 + L1P3 LINE L1 2753 3084 -3377 327 25 0 0 chr11 138641771 138641811 -10141661 + (CA)n Simple_repeat Simple_repeat 2 41 0 18788 175 22 37 chr11 138641811 138643510 -10139962 + L1P3 LINE L1 3084 4684 -1777 5765 88 5 9 chr11 138643479 138644279 -10139193 + L1PA10 LINE L1 5687 6483 0 * 3530 60 35 5 chr11 138644304 138644344 -10139128 - MLT2A1 LTR ERVL 0 444 407 612 40 0 0 chr11 138644344 138644419 -10139053 + (TA)n Simple_repeat Simple_repeat 2 76 0 3530 60 35 5 chr11 138644419 138644809 -10138663 - MLT2A1 LTR ERVL -37 407 1 474 333 30 0 chr11 138644954 138645191 -10138281 - HAL1 LINE L1 -932 1575 1332 4307 127 10 16 chr11 138645217 138645403 -10138069 - L1MA2 LINE L1 0 6304 6118 1848 119 20 34 chr11 138645403 138645697 -10137775 - AluSx SINE Alu -22 290 1 4307 127 10 16 chr11 138645697 138646185 -10137287 - L1MA2 LINE L1 -186 6118 5634 9063 166 30 6 chr11 138646238 138648265 -10135207 - L1P3 LINE L1 -462 5710 3646 1040 166 17 0 chr11 138648266 138648441 -10135031 + AluSg/x SINE Alu 118 295 -17 4999 244 44 56 chr11 138648441 138650681 -10132791 + L1M1 LINE L1 2389 4591 -2974 2287 96 0 0 chr11 138650681 138650982 -10132490 - AluY SINE Alu -10 301 1 4999 244 44 56 chr11 138650982 138651606 -10131866 + L1M1 LINE L1 4591 5221 -2344 * 37453 72 8 4 chr11 138651601 138656473 -10126999 + L1PA5 LINE L1 1 4889 -1257 261 0 0 0 chr11 138656474 138656503 -10126969 + (TCTCCC)n Simple_repeat Simple_repeat 1 29 0 5352 82 26 63 chr11 138656503 138657643 -10125829 + SVA Other Other 57 868 -520 693 23 8 38 chr11 138657667 138657798 -10125674 + SVA Other Other 668 794 -592 5846 67 45 62 chr11 138657811 138658781 -10124691 + SVA Other Other 433 1386 0 7586 54 6 2 chr11 138658781 138660002 -10123470 + L1PA5 LINE L1 4876 6151 -3 3573 169 8 71 chr11 138660002 138660686 -10122786 + L1M1 LINE L1 5201 5828 -1737 2829 16 0 0 chr11 138660686 138660992 -10122480 - AluYa5 SINE Alu -5 306 1 3573 169 8 71 chr11 138660992 138661112 -10122360 + L1M1 LINE L1 5828 5954 -1611 1444 92 5 0 chr11 138661121 138661305 -10122167 + AluSg SINE Alu 1 185 -125 2645 120 0 8 chr11 138661305 138661679 -10121793 - Harlequin LTR ERV1 -3142 3754 3384 * 9614 173 21 34 chr11 138661659 138663391 -10120081 - Harlequin LTR ERV1 -2826 4959 3249 * 11024 181 40 20 chr11 138663389 138665088 -10118384 - Harlequin LTR ERV1 -5256 2529 782 2785 3 0 3 chr11 138665088 138665388 -10118084 + AluYa5 SINE Alu 1 299 -12 11024 181 40 20 chr11 138665388 138665701 -10117771 - Harlequin LTR ERV1 -7003 782 477 1532 186 29 16 chr11 138665696 138666002 -10117470 - Harlequin LTR ERV1 -6331 318 9 * 3186 116 40 69 chr11 138666002 138666580 -10116892 - LTR10A LTR ERV1 -48 561 1 3082 196 2 2 chr11 138666582 138667179 -10116293 + L1M4 LINE L1 3750 4346 -1800 22 0 0 0 chr11 138667202 138667224 -10116248 + AT_rich Low_complexity Low_complexity 1 22 0 341 208 0 0 chr11 138667224 138667301 -10116171 + L1M4 LINE L1 5153 5229 -917 56 29 0 0 chr11 138667334 138667404 -10116068 + AT_rich Low_complexity Low_complexity 1 70 0 2237 222 53 46 chr11 138667478 138668086 -10115386 + LTR9 LTR ERV1 1 612 0 3162 172 28 16 chr11 138668121 138669118 -10114354 + HUERS-P3 LTR ERV1 25 1115 -7804 2319 99 142 11 chr11 138669128 138669502 -10113970 - MSTB2 LTR MaLR -31 426 4 3743 175 120 19 chr11 138669504 138670615 -10112857 + L1MD1 LINE L1 4970 6188 -54 2884 57 0 0 chr11 138670674 138671035 -10112437 + L1PA8 LINE L1 5824 6184 0 1099 166 31 63 chr11 138671093 138671270 -10112202 + MER20 DNA MER1_type 4 174 -45 2459 61 3 0 chr11 138671270 138671551 -10111921 + AluY SINE Alu 1 285 -26 243 79 0 0 chr11 138671551 138671589 -10111883 + (TTAAA)n Simple_repeat Simple_repeat 3 40 0 2459 61 3 0 chr11 138671589 138671602 -10111870 + AluY SINE Alu 285 296 -15 1099 166 31 63 chr11 138671602 138671647 -10111825 + MER20 DNA MER1_type 174 219 0 287 308 108 32 chr11 138672071 138672256 -10111216 - MIR3 SINE MIR -7 201 3 188 35 35 0 chr11 138672317 138672346 -10111126 + (CAT)n Simple_repeat Simple_repeat 1 30 0 303 211 14 14 chr11 138672379 138672450 -10111022 + MER20 DNA MER1_type 4 74 -145 274 338 133 36 chr11 138672668 138673054 -10110418 - L2 LINE L2 -208 3064 2637 199 315 87 0 chr11 138673097 138673189 -10110283 - MIR SINE MIR -1 261 162 4102 185 53 5 chr11 138673222 138673957 -10109515 - MER21B LTR ERV1 -32 831 62 487 174 0 0 chr11 138673979 138674048 -10109424 - AluJb SINE Alu -47 265 197 494 286 14 20 chr11 138674048 138674195 -10109277 - MIR SINE MIR -111 151 6 1573 196 170 5 chr11 138674196 138674619 -10108853 + LTR54B LTR ERV1 4 496 -2 287 325 46 59 chr11 138674845 138674878 -10108594 - L2 LINE L2 -939 2375 2343 2141 76 0 4 chr11 138674878 138675141 -10108331 + AluY SINE Alu 38 299 -12 287 325 46 59 chr11 138675141 138675412 -10108060 - L2 LINE L2 -971 2343 2075 257 308 0 39 chr11 138675478 138675608 -10107864 + L2 LINE L2 2156 2280 -1034 220 360 23 0 chr11 138675638 138675724 -10107748 - MIR SINE MIR -152 110 23 617 320 127 52 chr11 138675724 138676514 -10106958 + L2 LINE L2 2282 3130 -142 1399 200 4 8 chr11 138676514 138676754 -10106718 - MER8 DNA MER2_type 0 239 1 617 320 127 52 chr11 138676754 138676900 -10106572 + L2 LINE L2 3130 3264 -8 2219 80 0 20 chr11 138676914 138677244 -10106228 - AluY SINE Alu 0 311 1 286 339 39 6 chr11 138677247 138677427 -10106045 - L2 LINE L2 -1340 1974 1789 2286 84 0 17 chr11 138677665 138677962 -10105510 + AluSx SINE Alu 1 292 -20 1311 226 68 45 chr11 138678098 138678405 -10105067 + L1MC5 LINE L1 7372 7697 -264 2308 92 0 0 chr11 138678405 138678709 -10104763 + AluY SINE Alu 1 304 -7 1311 226 68 45 chr11 138678709 138678931 -10104541 + L1MC5 LINE L1 7697 7913 -48 2177 125 3 6 chr11 138679247 138679558 -10103914 + AluSx SINE Alu 1 310 -2 3472 125 62 0 chr11 138679743 138680239 -10103233 + MER1A DNA MER1_type 1 527 0 252 0 0 0 chr11 138680650 138680678 -10102794 + (T)n Simple_repeat Simple_repeat 1 28 0 1587 162 10 26 chr11 138682531 138682834 -10100638 + AluJo SINE Alu 1 298 -14 2122 79 3 17 chr11 138683033 138683325 -10100147 - AluSx SINE Alu -24 288 1 477 271 53 49 chr11 138683325 138683572 -10099900 + L1ME LINE L1 5573 5820 -301 229 279 82 61 chr11 138683737 138683884 -10099588 + HAL1b LINE L1 1192 1341 -7 * 260 248 59 126 chr11 138683869 138683976 -10099496 - L1ME LINE L1 -430 5691 5605 2402 77 0 3 chr11 138683976 138684289 -10099183 - AluSx SINE Alu 0 312 1 260 248 59 126 chr11 138684289 138684403 -10099069 - L1ME LINE L1 -516 5605 5485 1802 98 91 28 chr11 138685836 138686121 -10097351 - AluSq SINE Alu -10 303 1 261 0 0 0 chr11 138686174 138686203 -10097269 + (A)n Simple_repeat Simple_repeat 1 29 0 3484 123 62 0 chr11 138686614 138687110 -10096362 - MER1A DNA MER1_type 0 527 1 2177 125 3 6 chr11 138687295 138687606 -10095866 - AluSx SINE Alu -2 310 1 1292 228 68 45 chr11 138687922 138688144 -10095328 - L1MC5 LINE L1 -48 7913 7697 2308 92 0 0 chr11 138688144 138688448 -10095024 - AluY SINE Alu -7 304 1 1292 228 68 45 chr11 138688448 138688755 -10094717 - L1MC5 LINE L1 -264 7697 7372 2286 84 0 17 chr11 138688891 138689188 -10094284 - AluSx SINE Alu -20 292 1 312 333 39 6 chr11 138689427 138689607 -10093865 + L2 LINE L2 1789 1974 -1340 2499 58 0 0 chr11 138689611 138689904 -10093568 + AluY SINE Alu 1 293 -18 410 275 127 26 chr11 138690937 138691166 -10092306 + MIR SINE MIR 2 253 -9 250 286 65 0 chr11 138691167 138691244 -10092228 + MIR SINE MIR 166 247 -15 308 273 58 29 chr11 138691263 138691402 -10092070 - MIR3 SINE MIR -34 174 32 188 67 33 0 chr11 138691838 138691868 -10091604 + (TTATA)n Simple_repeat Simple_repeat 2 32 0 2117 120 0 10 chr11 138691936 138692236 -10091236 - AluSx SINE Alu -15 297 1 502 249 155 26 chr11 138692776 138692969 -10090503 + MIR SINE MIR 37 254 -8 218 315 130 22 chr11 138694132 138694224 -10089248 + MIR SINE MIR 21 122 -86 * 387 248 24 72 chr11 138694214 138694339 -10089133 + MER5A DNA MER1_type 14 136 -46 546 292 56 10 chr11 138694497 138694692 -10088780 - HAL1 LINE L1 -215 2292 2089 1028 182 57 2 chr11 138694697 138694965 -10088507 + MER2 DNA MER2_type 1 339 -6 280 111 0 0 chr11 138695161 138695206 -10088266 + Alu SINE Alu 2 46 -256 425 228 0 0 chr11 138695306 138695398 -10088074 + AluY SINE Alu 208 299 -12 532 267 113 33 chr11 138695442 138695721 -10087751 - HAL1 LINE L1 -625 1882 1557 723 291 29 25 chr11 138695786 138696030 -10087442 - HAL1 LINE L1 -980 1527 1283 812 286 173 19 chr11 138696221 138696759 -10086713 - HAL1 LINE L1 -1454 1053 433 1457 118 0 28 chr11 138696965 138697177 -10086295 - AluSx SINE Alu -17 295 90 558 144 44 0 chr11 138697241 138697331 -10086141 - AluSx SINE Alu -217 95 2 1094 110 92 5 chr11 138697472 138697690 -10085782 - Charlie5 DNA MER1_type -27 2585 2349 860 220 31 55 chr11 138698448 138698703 -10084769 - L1ME3A LINE L1 -3 6167 5919 191 303 193 18 chr11 138699554 138699663 -10083809 - MIR SINE MIR -35 227 100 275 302 41 30 chr11 138699836 138700005 -10083467 + L2 LINE L2 3142 3312 -1 * 316 260 10 118 chr11 138700004 138700090 -10083382 + MIR SINE MIR 57 110 -152 2408 89 0 13 chr11 138700090 138700404 -10083068 - AluSx SINE Alu -2 310 1 316 260 10 118 chr11 138700404 138700521 -10082951 + MIR SINE MIR 110 238 -24 2327 217 140 35 chr11 138701035 138701730 -10081742 - L1ME2 LINE L1 -10 6154 5387 1019 164 90 0 chr11 138702019 138702208 -10081264 + MER3 DNA MER1_type 3 208 -1 2206 106 0 7 chr11 138702380 138702682 -10080790 + AluSx SINE Alu 1 300 -12 366 23 0 0 chr11 138703133 138703176 -10080296 + (CA)n Simple_repeat Simple_repeat 1 43 0 2238 107 0 0 chr11 138703831 138704122 -10079350 + AluSc SINE Alu 1 291 -18 2338 76 3 7 chr11 138706207 138706496 -10076976 + AluSg SINE Alu 1 288 -22 2217 108 0 13 chr11 138708763 138709069 -10074403 - AluSx SINE Alu -10 302 1 315 343 36 24 chr11 138709967 138710133 -10073339 + L3 LINE CR1 1409 1576 -1 244 217 61 35 chr11 138711901 138712016 -10071456 + MIR3 SINE MIR 12 129 -79 3319 107 58 12 chr11 138712270 138712773 -10070699 + MER1A DNA MER1_type 2 527 0 205 247 284 0 chr11 138712784 138712865 -10070607 - MER5A DNA MER1_type -7 182 79 2144 133 0 3 chr11 138713007 138713315 -10070157 + AluSx SINE Alu 1 307 -5 531 197 136 7 chr11 138715401 138715430 -10068042 + MER5A DNA MER1_type 1 25 -164 185 0 40 0 chr11 138715430 138715455 -10068017 + (CAG)n Simple_repeat Simple_repeat 1 26 0 531 197 136 7 chr11 138715455 138715572 -10067900 + MER5A DNA MER1_type 25 166 -23 3926 98 30 0 chr11 138715871 138716409 -10067063 + MER41A LTR ERV1 1 554 0 680 161 303 0 chr11 138716516 138716564 -10066908 + MER3 DNA MER1_type 8 40 -169 1937 172 49 64 chr11 138716564 138716607 -10066865 + LTR40b LTR ERVL 1 43 -419 2174 132 0 0 chr11 138716607 138716903 -10066569 - AluSx SINE Alu -16 296 1 1937 172 49 64 chr11 138716903 138717325 -10066147 + LTR40b LTR ERVL 43 459 -3 680 161 303 0 chr11 138717325 138717431 -10066041 + MER3 DNA MER1_type 40 209 0 343 100 20 0 chr11 138717388 138717438 -10066034 - MER3 DNA MER1_type -119 90 40 * 224 267 95 60 chr11 138717441 138717557 -10065915 + L3 LINE CR1 1456 1575 -2 769 295 115 35 chr11 138718341 138718417 -10065055 - L1MC4a LINE L1 -743 5403 5335 1624 144 22 4 chr11 138718417 138718694 -10064778 - L1MB2 LINE L1 0 6171 5890 769 295 115 35 chr11 138718694 138719299 -10064173 - L1MC4a LINE L1 -811 5335 5175 195 42 0 0 chr11 138719308 138719332 -10064140 + (T)n Simple_repeat Simple_repeat 1 24 0 442 249 155 26 chr11 138720455 138720648 -10062824 - MIR SINE MIR -8 254 37 2479 70 0 3 chr11 138721188 138721487 -10061985 + AluY SINE Alu 1 298 -13 1393 263 181 79 chr11 138721531 138722847 -10060625 - HAL1 LINE L1 -625 1882 433 1424 127 0 28 chr11 138723053 138723265 -10060207 - AluSx SINE Alu -17 295 90 558 144 44 0 chr11 138723329 138723419 -10060053 - AluSx SINE Alu -218 95 2 1094 110 92 5 chr11 138723560 138723778 -10059694 - Charlie5 DNA MER1_type -27 2585 2349 860 220 31 55 chr11 138724536 138724791 -10058681 - L1ME3A LINE L1 -3 6167 5919 191 303 193 18 chr11 138725642 138725751 -10057721 - MIR SINE MIR -35 227 100 259 308 41 30 chr11 138725924 138726093 -10057379 + L2 LINE L2 3142 3312 -1 * 316 260 10 118 chr11 138726092 138726178 -10057294 + MIR SINE MIR 57 110 -152 2422 86 0 13 chr11 138726178 138726492 -10056980 - AluSx SINE Alu -2 310 1 316 260 10 118 chr11 138726492 138726609 -10056863 + MIR SINE MIR 110 238 -24 2335 217 140 35 chr11 138727123 138727818 -10055654 - L1ME2 LINE L1 -10 6154 5387 1019 164 90 0 chr11 138728105 138728294 -10055178 + MER3 DNA MER1_type 3 208 -1 2442 90 0 0 chr11 138728466 138728767 -10054705 + AluSx SINE Alu 1 301 -11 402 21 0 0 chr11 138729218 138729265 -10054207 + (CA)n Simple_repeat Simple_repeat 1 47 0 2214 110 0 0 chr11 138729920 138730211 -10053261 + AluSc SINE Alu 1 291 -18 2308 154 11 0 chr11 138732151 138732527 -10050945 - MSTB-int LTR MaLR -1271 380 1 2535 142 21 50 chr11 138732527 138732964 -10050508 - MSTB LTR MaLR -2 424 1 180 77 0 0 chr11 138732966 138732992 -10050480 + (CA)n Simple_repeat Simple_repeat 1 26 0 767 130 84 15 chr11 138733012 138733143 -10050329 + FRAM SINE Alu 18 157 -19 452 301 132 20 chr11 138733711 138734066 -10049406 + L2 LINE L2 1926 2320 -994 1759 252 121 31 chr11 138734376 138735140 -10048332 + L1MC4a LINE L1 5229 5403 -743 384 321 112 46 chr11 138736394 138736765 -10046707 + L2 LINE L2 2703 3083 -189 306 238 0 0 chr11 138736945 138737008 -10046464 + L1M4 LINE L1 4058 4120 -2026 6222 198 20 22 chr11 138737638 138737739 -10045733 + MSTB-int LTR MaLR 444 544 -1107 2192 95 11 0 chr11 138737739 138738013 -10045459 + AluSc SINE Alu 1 277 -32 216 0 0 0 chr11 138738015 138738039 -10045433 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 6222 198 20 22 chr11 138738039 138739266 -10044206 + MSTB-int LTR MaLR 545 1651 0 2423 179 19 5 chr11 138739266 138739686 -10043786 + MSTB LTR MaLR 1 426 0 2079 151 3 0 chr11 138739904 138740208 -10043264 - AluSq SINE Alu -8 305 1 506 208 77 15 chr11 138740971 138741101 -10042371 - MIR SINE MIR -82 180 43 2086 182 72 27 chr11 138741279 138741762 -10041710 - MLT1D LTR MaLR 0 505 1 254 298 73 33 chr11 138741957 138742108 -10041364 + L2 LINE L2 2934 3090 -182 295 310 62 0 chr11 138742253 138742382 -10041090 + L3 LINE CR1 1326 1462 -115 2210 283 60 11 chr11 138742688 138743555 -10039917 + L1MEc LINE L1 1113 2021 -4375 2247 215 33 39 chr11 138743579 138744123 -10039349 - MER74A LTR ERVL -17 541 1 1372 195 17 32 chr11 138744123 138744471 -10039001 + L1MEc LINE L1 2019 2361 -4035 308 250 60 10 chr11 138744461 138744561 -10038911 - L1MB1 LINE L1 -77 6091 5987 * 218 360 10 20 chr11 138744970 138745070 -10038402 + MIR SINE MIR 2 100 -162 343 157 67 22 chr11 138745103 138745192 -10038280 - L1MC5 LINE L1 -37 7924 7832 240 208 21 0 chr11 138745214 138745262 -10038210 + CT-rich Low_complexity Low_complexity 1 49 0 292 229 38 51 chr11 138745263 138745420 -10038052 - L1MC5 LINE L1 -167 7794 7640 761 184 66 7 chr11 138745426 138745578 -10037894 + MLT1B LTR MaLR 1 161 -229 28469 123 13 53 chr11 138745584 138752032 -10031440 - L1PA8 LINE L1 0 6172 1 547 238 91 0 chr11 138752047 138752190 -10031282 + MIR SINE MIR 106 261 -1 15264 159 22 11 chr11 138752393 138756912 -10026560 + L1MA2 LINE L1 1044 5618 -1947 6930 107 12 2 chr11 138757013 138758274 -10025198 + L1MA2 LINE L1 6451 7723 0 529 331 66 44 chr11 138759118 138759483 -10023989 + L1MEc LINE L1 1878 2250 -4146 1227 257 78 16 chr11 138759487 138760118 -10023354 + L1MEc LINE L1 2231 2900 -3315 393 183 110 0 chr11 138760121 138760203 -10023269 + MSTD LTR MaLR 306 396 0 29 78 0 0 chr11 138760597 138760661 -10022811 + AT_rich Low_complexity Low_complexity 1 64 0 2657 180 19 28 chr11 138760829 138761396 -10022076 - L1M1 LINE L1 -6992 573 12 24 67 0 0 chr11 138761416 138761461 -10022011 + AT_rich Low_complexity Low_complexity 1 45 0 1823 176 11 0 chr11 138761466 138761750 -10021722 + AluJb SINE Alu 1 287 -25 216 0 0 0 chr11 138761752 138761776 -10021696 + (TG)n Simple_repeat Simple_repeat 1 24 0 267 82 213 16 chr11 138761776 138761837 -10021635 - L1PB4 LINE L1 -16 6140 6068 2317 75 54 0 chr11 138762315 138762610 -10020862 - AluY SINE Alu 0 311 1 2951 220 91 66 chr11 138762628 138763808 -10019664 + L1MC4 LINE L1 6691 7899 -143 1209 122 0 6 chr11 138764132 138764296 -10019176 - AluSg/x SINE Alu -25 287 125 307 217 65 7 chr11 138764686 138764824 -10018648 + L1ME LINE L1 713 858 -5212 1411 195 0 4 chr11 138764831 138765103 -10018369 + L1M3e LINE L1 7 277 -6753 2623 251 82 32 chr11 138765153 138767453 -10016019 + L1M3e LINE L1 857 3017 -4089 744 178 56 6 chr11 138767574 138767754 -10015718 - L1MA8 LINE L1 -86 6205 6017 593 334 81 13 chr11 138768038 138768421 -10015051 + L1M3e LINE L1 3701 4109 -2997 6357 175 49 20 chr11 138768423 138770169 -10013303 + L1M1 LINE L1 3411 5211 -2354 2486 108 13 29 chr11 138770172 138770553 -10012919 + THE1C LTR MaLR 1 375 0 6967 120 87 44 chr11 138770553 138771840 -10011632 + THE1C-int LTR MaLR 1 1342 -238 1583 109 7 4 chr11 138771843 138772118 -10011354 + L1MA2 LINE L1 2192 2467 -5098 2031 122 83 13 chr11 138772645 138773030 -10010442 + L1MA2 LINE L1 2433 2844 -4721 * 12508 169 25 17 chr11 138773008 138776669 -10006803 + L1MA2 LINE L1 3884 7577 -146 2325 63 7 13 chr11 138776669 138776970 -10006502 + AluY SINE Alu 1 299 -12 12508 169 25 17 chr11 138776970 138777119 -10006353 + L1MA2 LINE L1 7577 7723 0 1390 204 83 58 chr11 138777247 138777645 -10005827 - MER70B LTR ERVL -13 565 158 1475 153 4 11 chr11 138778846 138779114 -10004358 - L1MA4 LINE L1 -268 6032 5767 1016 116 16 11 chr11 138779114 138779298 -10004174 + L1MA4 LINE L1 6111 6300 0 296 277 48 0 chr11 138780245 138780328 -10003144 - MIR SINE MIR -73 189 103 409 313 35 7 chr11 138781127 138781271 -10002201 - MIR SINE MIR -105 157 10 248 316 90 7 chr11 138781293 138781448 -10002024 - L2 LINE L2 0 3313 3146 547 256 0 0 chr11 138782244 138782373 -10001099 + L1PB4 LINE L1 6024 6152 -4 207 273 279 19 chr11 138782712 138782873 -10000599 + MIR3 SINE MIR 3 205 -3 297 287 0 11 chr11 138783427 138783514 -9999958 - MIR SINE MIR -6 256 171 417 264 34 7 chr11 138783773 138783921 -9999551 + Charlie4 DNA MER1_type 34 185 -1776 18413 45 7 1 chr11 138784338 138787412 -9996060 - L1PA5 LINE L1 -13 6141 3061 7057 41 3 0 chr11 138787412 138788337 -9995135 + L1PA5 LINE L1 2127 3054 -3092 419 267 136 18 chr11 138788338 138788559 -9994913 - L1MC/D LINE L1 -2220 5588 5342 198 263 0 0 chr11 138789145 138789202 -9994270 - L2 LINE L2 -625 2689 2633 503 304 150 15 chr11 138789204 138789477 -9993995 - L2 LINE L2 0 3313 3004 * 699 342 84 25 chr11 138789465 138789868 -9993604 - L2 LINE L2 -439 2875 2449 984 98 33 13 chr11 138789890 138790043 -9993429 + L1PA16 LINE L1 6003 6158 -8 242 197 15 30 chr11 138790881 138790947 -9992525 - LTR49 LTR ERV1 -72 523 459 766 19 19 75 chr11 138792795 138792928 -9990544 + L1PA8 LINE L1 6056 6182 0 6328 191 47 27 chr11 138792934 138793519 -9989953 + L1MC3 LINE L1 5317 5888 -2154 1849 158 5 57 chr11 138793519 138793905 -9989567 - MER47A DNA MER2_type 0 366 1 6328 191 47 27 chr11 138793905 138794969 -9988503 + L1MC3 LINE L1 5888 7097 -945 812 256 71 46 chr11 138795389 138795756 -9987716 + LTR16A1 LTR ERVL 82 457 0 679 313 52 12 chr11 138795756 138796156 -9987316 + HERV16 LTR ERVL 1 416 -4580 897 327 58 7 chr11 138796433 138796885 -9986587 + HERV16 LTR ERVL 730 1204 -3792 286 397 16 0 chr11 138796925 138797119 -9986353 + HERV16 LTR ERVL 1389 1585 -4179 335 155 0 0 chr11 138797286 138797344 -9986128 + HERV16 LTR ERVL 1711 1768 -3228 516 312 22 13 chr11 138797489 138797720 -9985752 + ERVL LTR ERVL 4890 5122 -642 274 273 37 68 chr11 138797742 138797903 -9985569 + ERVL LTR ERVL 5088 5243 -411 1210 271 101 10 chr11 138798103 138798520 -9984952 + LTR16A1 LTR ERVL 3 457 0 385 313 73 17 chr11 138798939 138799172 -9984300 - LTR33 LTR ERVL -275 246 1 2300 44 7 17 chr11 138799577 138799873 -9983599 - AluY SINE Alu -18 293 1 4339 136 16 12 chr11 138800625 138801376 -9982096 + MER4E LTR ERV1 10 763 -3 242 336 10 19 chr11 138802095 138802199 -9981273 - MIR SINE MIR -2 260 158 293 253 0 81 chr11 138802565 138802664 -9980808 + L2 LINE L2 3222 3312 -1 2325 216 157 3 chr11 138805831 138806521 -9976951 + L1M4c LINE L1 1349 2144 -4240 2326 220 66 2 chr11 138806545 138807072 -9976400 + MSTD-int LTR MaLR 1168 1728 -7 1347 239 30 41 chr11 138807079 138807472 -9976000 + MSTD LTR MaLR 1 389 -7 917 235 13 4 chr11 138807472 138807743 -9975729 + L1M4c LINE L1 2329 2604 -3778 1056 135 0 0 chr11 138807760 138807923 -9975549 - L1PB1 LINE L1 -1 6150 5988 28318 122 11 67 chr11 138807938 138813428 -9970044 - L1PB1 LINE L1 -950 5196 12 1262 196 76 3 chr11 138814137 138814519 -9968953 + L1M4c LINE L1 3340 3749 -2633 2228 128 0 0 chr11 138815512 138815824 -9967648 - AluSx SINE Alu 0 312 1 455 250 68 40 chr11 138816305 138816453 -9967019 + MIR SINE MIR 9 160 -102 424 301 129 0 chr11 138816453 138816646 -9966826 + ERVL LTR ERVL 3414 3631 -2133 1140 294 36 18 chr11 138816824 138817266 -9966206 + ERVL LTR ERVL 4320 4769 -885 938 312 57 22 chr11 138817309 138817767 -9965705 + ERVL LTR ERVL 4896 5369 -395 820 219 318 6 chr11 138818123 138818475 -9964997 + LTR50 LTR ERVL 1 462 -333 601 174 0 0 chr11 138818548 138818646 -9964826 - FRAM SINE Alu -25 151 54 275 263 79 9 chr11 138818905 138819019 -9964453 + MIR SINE MIR 140 261 -1 * 423 304 109 0 chr11 138819015 138819153 -9964319 + L2 LINE L2 3116 3268 -4 41 0 0 0 chr11 138819219 138819260 -9964212 + AT_rich Low_complexity Low_complexity 1 41 0 21 36 0 0 chr11 138819925 138819953 -9963519 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr11 138820224 138820245 -9963227 + (TG)n Simple_repeat Simple_repeat 1 21 0 213 196 0 0 chr11 138823969 138824015 -9959457 + (CA)n Simple_repeat Simple_repeat 1 46 0 24 32 0 0 chr11 138825987 138826018 -9957454 + AT_rich Low_complexity Low_complexity 1 31 0 2249 106 0 40 chr11 138826206 138826527 -9956945 - AluSx SINE Alu -4 308 1 381 298 99 8 chr11 138826653 138826895 -9956577 + L1MEc LINE L1 1310 1573 -4823 282 329 55 12 chr11 138827383 138827547 -9955925 - L2 LINE L2 -1339 1975 1805 500 215 31 40 chr11 138827703 138828251 -9955221 - L1MD2 LINE L1 -46 6811 6140 * 969 219 47 17 chr11 138828245 138828542 -9954930 + L1ME1 LINE L1 5857 6162 -4 4939 170 29 24 chr11 138829421 138830960 -9952512 - L1MA7 LINE L1 -2 7310 5767 2184 231 21 24 chr11 138830966 138831713 -9951759 - L1MA7 LINE L1 -4516 2582 1827 5105 212 27 35 chr11 138831717 138833306 -9950166 - L1MD2 LINE L1 -917 5727 4151 1786 141 132 6 chr11 138833306 138833661 -9949811 - MSTA LTR MaLR 0 428 29 1784 258 20 3 chr11 138833673 138834285 -9949187 - L1MD2 LINE L1 -2490 4154 3533 1700 235 14 6 chr11 138834291 138834797 -9948675 + L1M4 LINE L1 1200 1709 -4833 853 273 138 66 chr11 138834798 138835513 -9947959 - L1MD2 LINE L1 -5701 841 75 358 305 104 6 chr11 138835620 138835784 -9947688 - MIR SINE MIR -48 214 35 352 213 218 30 chr11 138838070 138838267 -9945205 + L2 LINE L2 2134 2367 -947 * 367 209 227 0 chr11 138838257 138838367 -9945105 + MIR SINE MIR 125 259 -3 263 250 17 0 chr11 138838583 138838643 -9944829 - L1MA7 LINE L1 -7107 61 1 203 307 40 40 chr11 138839773 138839848 -9943624 + MIR SINE MIR 4 78 -184 625 288 73 13 chr11 138840128 138840361 -9943111 - MIR SINE MIR -11 251 5 417 218 137 24 chr11 138840690 138840814 -9942658 + MIR SINE MIR 17 154 -108 270 113 0 155 chr11 138841251 138841322 -9942150 - MSTC LTR MaLR -6 422 363 1765 166 0 12 chr11 138841383 138841720 -9941752 + L1MC3 LINE L1 7398 7730 -55 1003 188 21 10 chr11 138841738 138841930 -9941542 + AluJb SINE Alu 113 306 -6 545 258 70 5 chr11 138841931 138842144 -9941328 + L1M4 LINE L1 3503 3729 -2417 25 0 0 0 chr11 138842360 138842385 -9941087 + AT_rich Low_complexity Low_complexity 1 25 0 2443 91 0 0 chr11 138842530 138842837 -9940635 - AluSc SINE Alu -2 307 1 28 0 0 0 chr11 138843206 138843234 -9940238 + AT_rich Low_complexity Low_complexity 1 28 0 229 297 40 14 chr11 138843437 138843511 -9939961 - MER2 DNA MER2_type 0 345 270 439 161 65 1 chr11 138843554 138843718 -9939754 - MER2 DNA MER2_type -147 198 1 243 314 81 8 chr11 138844055 138844179 -9939293 - MLT1K LTR MaLR -353 235 103 444 277 8 31 chr11 138845363 138845493 -9937979 + MIR SINE MIR 2 128 -134 586 321 33 8 chr11 138845679 138845919 -9937553 - MIR SINE MIR -12 250 5 363 342 0 13 chr11 138846185 138846337 -9937135 + GA-rich Low_complexity Low_complexity 3 152 0 2583 192 52 19 chr11 138846359 138846980 -9936492 + L1MB8 LINE L1 5537 6177 -1 2070 106 17 14 chr11 138849110 138849402 -9934070 - AluSc SINE Alu -16 293 1 1306 207 26 34 chr11 138851018 138851405 -9932067 + L1M4 LINE L1 4922 5305 -841 45041 40 1 0 chr11 138851411 138857556 -9925916 + L1PA4 LINE L1 3 6154 -1 24 0 0 0 chr11 138857586 138857610 -9925862 + AT_rich Low_complexity Low_complexity 1 24 0 186 43 0 0 chr11 138857927 138857950 -9925522 + (TTTTA)n Simple_repeat Simple_repeat 1 23 0 30234 118 8 13 chr11 138857950 138863795 -9919677 - L1PA8 LINE L1 -24 6463 617 4215 127 34 102 chr11 138863795 138865302 -9918170 + pTR5 LTR ERV1 743 2606 0 3889 141 25 16 chr11 138865302 138865911 -9917561 - L1PA8 LINE L1 -5838 623 10 1002 220 69 20 chr11 138865953 138866258 -9917214 - L1MC3 LINE L1 0 7785 7466 * 3345 113 39 18 chr11 138866255 138867042 -9916430 - L1PBa LINE L1 -5281 1582 636 1085 154 53 0 chr11 138867044 138867232 -9916240 - L1PBa LINE L1 -6665 198 1 3974 152 49 9 chr11 138867246 138867945 -9915527 - L1MB2 LINE L1 -2 6169 5443 2417 179 14 2 chr11 138869397 138869815 -9913657 - MSTB LTR MaLR -3 423 1 252 234 0 0 chr11 138872062 138872109 -9911363 + MER96 DNA MER1_type? 2 48 -127 3407 58 0 0 chr11 138873343 138873771 -9909701 - L1P LINE L1 -1319 4827 4400 526 211 0 18 chr11 138873772 138873881 -9909591 - Tigger6 DNA MER2_type -353 1244 1138 * 1633 210 43 0 chr11 138873872 138874196 -9909276 - Tigger6 DNA MER2_type -1259 338 1 422 341 33 23 chr11 138874817 138875031 -9908441 + MIR SINE MIR 21 236 -26 494 240 10 10 chr11 138876265 138876369 -9907103 - MER81 DNA DNA 0 114 11 2162 95 0 24 chr11 138876485 138876781 -9906691 - AluY SINE Alu -22 289 1 1460 150 49 0 chr11 138876844 138877090 -9906382 - L1MC1 LINE L1 -13 6320 6063 1692 100 8 0 chr11 138877149 138877388 -9906084 - L1PA8 LINE L1 0 6172 5932 30 0 0 0 chr11 138877775 138877805 -9905667 + AT_rich Low_complexity Low_complexity 1 30 0 238 317 14 21 chr11 138877833 138877975 -9905497 + GA-rich Low_complexity Low_complexity 3 143 0 297 334 141 12 chr11 138878103 138878423 -9905049 + L2 LINE L2 1693 2053 -1261 344 195 24 12 chr11 138879544 138879626 -9903846 - MER20 DNA MER1_type -134 85 3 335 305 42 17 chr11 138879868 138879986 -9903486 + MIR SINE MIR 29 149 -113 454 287 56 10 chr11 138880565 138880760 -9902712 - MIR SINE MIR -19 243 40 3696 98 6 8 chr11 138881269 138881781 -9901691 - MER9 LTR ERVK 0 511 1 398 240 125 65 chr11 138881803 138881884 -9901588 - HAL1 LINE L1 -146 2361 2286 2228 108 3 3 chr11 138881884 138882180 -9901292 - AluSp SINE Alu -17 296 1 398 240 125 65 chr11 138882180 138882298 -9901174 - HAL1 LINE L1 -221 2286 2150 488 259 97 40 chr11 138882382 138882568 -9900904 - L2 LINE L2 -134 3179 2974 1176 207 141 47 chr11 138882568 138882994 -9900478 - MER31B LTR ERV1 0 466 1 488 259 97 40 chr11 138882994 138883054 -9900418 - L2 LINE L2 -339 2974 2919 3680 115 43 6 chr11 138883197 138883736 -9899736 - LTR6A LTR ERV1 0 564 6 313 70 0 0 chr11 138884120 138884163 -9899309 - MADE1 DNA Mariner -37 43 1 499 280 71 57 chr11 138884231 138884567 -9898905 - HAL1 LINE L1 -375 2132 1792 1174 216 68 49 chr11 138884567 138885061 -9898411 + MER21B LTR ERV1 1 551 -312 484 244 141 0 chr11 138885330 138885486 -9897986 - MER45A DNA AcHobo 0 178 1 379 209 86 80 chr11 138885647 138885746 -9897726 - L1MC5 LINE L1 -35 7926 7824 2244 127 0 7 chr11 138885746 138886054 -9897418 - AluSq SINE Alu -7 306 1 379 209 86 80 chr11 138886054 138886117 -9897355 - L1MC5 LINE L1 -137 7824 7763 326 319 103 0 chr11 138886576 138886692 -9896780 - L2 LINE L2 -44 3228 3101 2159 135 130 22 chr11 138886692 138887107 -9896365 + LTR46 LTR ERV1 1 460 0 355 145 32 0 chr11 138887363 138887425 -9896047 + LTR33 LTR ERVL 456 519 -2 952 254 69 95 chr11 138887434 138887899 -9895573 - LTR33 LTR ERVL -66 455 3 2466 100 0 0 chr11 138889548 138889859 -9893613 + AluSx SINE Alu 1 311 -1 429 95 0 0 chr11 138890060 138890123 -9893349 + (TA)n Simple_repeat Simple_repeat 2 64 0 288 121 121 15 chr11 138891473 138891539 -9891933 - MER69 DNA AcHobo -19 2507 2435 353 279 0 0 chr11 138891587 138891673 -9891799 - MER69 DNA AcHobo -2439 87 2 340 260 126 8 chr11 138891918 138892045 -9891427 - MIR SINE MIR -108 154 13 2207 132 0 0 chr11 138892895 138893205 -9890267 + AluSq SINE Alu 2 311 -2 274 284 60 0 chr11 138893364 138893431 -9890041 + L2 LINE L2 3201 3271 -1 844 230 11 11 chr11 138893903 138894081 -9889391 + MER5B DNA MER1_type 1 178 0 1893 102 65 4 chr11 138894952 138895227 -9888245 - AluSx SINE Alu -20 292 1 240 324 130 24 chr11 138895270 138895517 -9887955 - L2 LINE L2 -783 2531 2259 2250 98 13 3 chr11 138895603 138895908 -9887564 + AluSg SINE Alu 1 308 -2 189 244 16 98 chr11 138897241 138897364 -9886108 - MIR SINE MIR -44 218 106 325 267 30 10 chr11 138897614 138897715 -9885757 + HAL1 LINE L1 1504 1606 -901 1161 204 188 0 chr11 138897914 138898159 -9885313 + AluJo SINE Alu 2 292 -10 334 265 204 0 chr11 138898180 138898312 -9885160 + L1ME LINE L1 145 303 -5902 620 253 84 48 chr11 138898610 138899270 -9884202 + L1ME LINE L1 671 1347 -4868 2465 74 0 7 chr11 138899282 138899581 -9883891 + AluSg SINE Alu 1 297 -13 412 125 34 91 chr11 138899583 138899671 -9883801 + L1M3 LINE L1 5393 5475 -693 2679 179 3 61 chr11 138899671 138900309 -9883163 + L1P LINE L1 4709 5309 -837 4655 179 91 12 chr11 138900342 138901338 -9882134 + L1MD1 LINE L1 4873 5986 -256 2199 175 16 16 chr11 138901338 138901703 -9881769 + MLT1A1 LTR MaLR 1 365 0 4655 179 91 12 chr11 138901703 138901956 -9881516 + L1MD1 LINE L1 5986 6218 -24 344 250 150 31 chr11 138902083 138902201 -9881271 + L1ME LINE L1 2024 2127 -4269 2030 152 3 0 chr11 138902201 138902511 -9880961 + AluSx SINE Alu 1 311 -1 344 250 150 31 chr11 138902511 138902736 -9880736 + L1ME LINE L1 2127 2414 -3982 2433 69 0 0 chr11 138902736 138903025 -9880447 + AluSp SINE Alu 1 289 -24 344 250 150 31 chr11 138903025 138903040 -9880432 + L1ME LINE L1 2414 2426 -3970 609 269 70 38 chr11 138903080 138903287 -9880185 + L1ME LINE L1 2366 2592 -3623 857 197 0 0 chr11 138903287 138903419 -9880053 + FLAM_A SINE Alu 1 132 -1 609 269 70 38 chr11 138903419 138903582 -9879890 + L1ME LINE L1 2592 2748 -3467 2187 184 78 45 chr11 138903598 138904135 -9879337 + L1MB7 LINE L1 5628 6182 -2 289 197 111 8 chr11 138904241 138904358 -9879114 + L1ME LINE L1 2967 3095 -3120 610 233 96 37 chr11 138904396 138904666 -9878806 + L1MC5 LINE L1 7348 7633 -328 466 243 33 27 chr11 138904661 138904809 -9878663 + L1M4 LINE L1 4867 5013 -1133 * 1833 156 26 3 chr11 138904829 138905131 -9878341 + AluJb SINE Alu 4 312 0 26 0 0 0 chr11 138905142 138905168 -9878304 + AT_rich Low_complexity Low_complexity 1 26 0 236 288 0 0 chr11 138905846 138905912 -9877560 + L2 LINE L2 3247 3312 -1 199 289 211 6 chr11 138906121 138906287 -9877185 + MIR3 SINE MIR 3 202 -6 2381 96 0 0 chr11 138906658 138906961 -9876511 - AluSx SINE Alu -9 303 1 1203 188 76 12 chr11 138907059 138907309 -9876163 - L1M4 LINE L1 -6275 267 2 413 232 30 10 chr11 138907343 138907442 -9876030 - HAL1b LINE L1 -997 351 251 247 289 117 68 chr11 138907505 138907754 -9875718 - MLT1H LTR MaLR -94 455 195 4225 112 65 36 chr11 138908064 138908588 -9874884 - L1MA5A LINE L1 -2 6295 5743 1796 126 56 7 chr11 138908588 138908874 -9874598 - AluJo SINE Alu -12 300 1 4225 112 65 36 chr11 138908874 138909074 -9874398 - L1MA5A LINE L1 -554 5743 5550 1896 114 0 32 chr11 138909423 138909731 -9873741 + AluSg SINE Alu 2 299 -11 2775 214 59 23 chr11 138909733 138910290 -9873182 + L1MB7 LINE L1 391 982 -5560 1798 99 99 31 chr11 138910290 138910582 -9872890 + AluSq SINE Alu 1 312 -1 2775 214 59 23 chr11 138910582 138910752 -9872720 + L1MB7 LINE L1 982 1144 -5398 1872 205 62 6 chr11 138910744 138911212 -9872260 + L1MB7 LINE L1 1435 1928 -4718 * 452 71 0 0 chr11 138911213 138911269 -9872203 - U2 snRNA snRNA -131 57 2 1747 151 7 33 chr11 138911269 138911574 -9871898 - AluJb SINE Alu -15 297 1 376 176 12 0 chr11 138911578 138911663 -9871809 + L1MB7 LINE L1 2740 2825 -3819 1031 207 18 0 chr11 138911665 138911834 -9871638 + FAM SINE Alu 1 172 -3 863 213 77 24 chr11 138911912 138912119 -9871353 + AluJo SINE Alu 1 218 -94 4248 191 77 65 chr11 138912126 138912421 -9871051 + L1MB7 LINE L1 4371 4661 -2021 2234 81 0 7 chr11 138912421 138912716 -9870756 - AluSg SINE Alu -17 293 1 4248 191 77 65 chr11 138912716 138913047 -9870425 + L1MB7 LINE L1 4661 4986 -1696 1791 167 37 28 chr11 138913047 138913400 -9870072 + MER46B DNA MER2_type 2 232 -4 4248 191 77 65 chr11 138913400 138915053 -9868419 + L1MB7 LINE L1 4986 6660 -22 283 188 0 62 chr11 138915069 138915133 -9868339 + HAL1b LINE L1 376 435 -913 869 215 113 72 chr11 138915144 138915614 -9867858 - L1MC4 LINE L1 0 8042 7554 634 259 86 26 chr11 138915629 138915861 -9867611 + HAL1b LINE L1 763 1008 -340 35 41 0 0 chr11 138915878 138915927 -9867545 + AT_rich Low_complexity Low_complexity 1 49 0 1950 132 10 0 chr11 138915988 138916284 -9867188 - AluSx SINE Alu -5 307 9 2394 60 0 45 chr11 138917507 138917821 -9865651 - AluY SINE Alu -11 300 1 24 0 0 0 chr11 138917904 138917928 -9865544 + AT_rich Low_complexity Low_complexity 1 24 0 434 342 131 19 chr11 138918024 138918489 -9864983 + L2 LINE L2 1212 1728 -1586 2721 275 97 45 chr11 138918500 138919843 -9863629 - L2 LINE L2 0 3313 1925 431 138 161 23 chr11 138919843 138919930 -9863542 - Tigger7 DNA MER2_type 0 2487 2389 * 913 233 0 0 chr11 138919928 138920091 -9863381 - Tigger7 DNA MER2_type -284 266 104 495 227 0 0 chr11 138920091 138920179 -9863293 + AluS SINE Alu 2 89 -224 * 817 218 35 18 chr11 138920172 138920342 -9863130 - AluSx SINE Alu -137 175 3 1014 218 127 46 chr11 138920344 138920715 -9862757 + L2 LINE L2 1337 1737 -1577 395 156 0 0 chr11 138920857 138920921 -9862551 + Tigger7 DNA MER2_type 49 112 -621 2488 31 7 3 chr11 138920931 138921223 -9862249 + AluY SINE Alu 1 293 -18 288 0 0 0 chr11 138921326 138921358 -9862114 + (A)n Simple_repeat Simple_repeat 1 32 0 764 160 0 17 chr11 138922129 138922248 -9861224 + AluJb SINE Alu 2 118 -194 2343 93 0 16 chr11 138922267 138922577 -9860895 + AluSq SINE Alu 1 305 -8 2086 114 0 4 chr11 138923015 138923295 -9860177 + AluSg SINE Alu 1 279 -31 2293 90 0 7 chr11 138924186 138924485 -9858987 + AluSc SINE Alu 1 297 -12 187 313 0 0 chr11 138924517 138924581 -9858891 + L3 LINE CR1 1339 1402 -175 497 288 36 0 chr11 138924651 138924790 -9858682 - L2 LINE L2 0 3272 3129 491 256 145 81 chr11 138925192 138925204 -9858268 + L1MEd LINE L1 968 978 -1512 2000 115 20 3 chr11 138925204 138925499 -9857973 + AluJb SINE Alu 1 300 -12 491 256 145 81 chr11 138925499 138926125 -9857347 + L1MEd LINE L1 978 1730 -760 2191 117 3 0 chr11 138926575 138926875 -9856597 - AluSp SINE Alu -12 301 1 1634 162 10 30 chr11 138926877 138927180 -9856292 - AluJo SINE Alu -13 299 3 2354 74 0 7 chr11 138927315 138927613 -9855859 - AluSg SINE Alu -14 296 1 1072 141 12 0 chr11 138927714 138927877 -9855595 - AluSg/x SINE Alu -11 299 135 2392 87 0 0 chr11 138927918 138928217 -9855255 - AluSq SINE Alu -14 299 1 2237 67 14 0 chr11 138928324 138928607 -9854865 - AluSc SINE Alu -22 287 1 340 186 116 12 chr11 138928620 138928706 -9854766 + HAL1b LINE L1 1013 1107 -241 209 308 26 0 chr11 138928733 138928811 -9854661 + MER5A DNA MER1_type 88 167 -22 1380 139 61 61 chr11 138931010 138931305 -9852167 + L1MA5 LINE L1 6004 6298 -2 2421 73 0 13 chr11 138931397 138931698 -9851774 + AluSc SINE Alu 3 299 -10 1326 161 82 34 chr11 138932254 138932521 -9850951 - AluJo SINE Alu -3 309 30 2132 134 0 0 chr11 138933278 138933568 -9849904 + AluSx SINE Alu 1 290 -22 1006 94 0 0 chr11 138934404 138934531 -9848941 + AluJb SINE Alu 7 133 -179 564 253 102 45 chr11 138934901 138935029 -9848443 - MIR SINE MIR -2 260 141 2304 108 0 0 chr11 138935029 138935334 -9848138 + AluSg SINE Alu 3 307 -3 564 253 102 45 chr11 138935334 138935450 -9848022 - MIR SINE MIR -121 141 2 1792 183 7 10 chr11 138935697 138936003 -9847469 - AluJb SINE Alu -7 305 1 238 169 117 26 chr11 138936109 138936186 -9847286 - MIR3 SINE MIR -20 188 105 1857 163 13 0 chr11 138936496 138936803 -9846669 - AluJo SINE Alu -1 311 1 1993 145 10 0 chr11 138936813 138937123 -9846349 - AluSp SINE Alu 0 313 1 2447 83 3 6 chr11 138937132 138937445 -9846027 - AluSp SINE Alu -1 312 1 1816 164 3 7 chr11 138937460 138937758 -9845714 - AluJb SINE Alu -15 297 1 1724 179 10 10 chr11 138937892 138938182 -9845290 - AluJo SINE Alu -22 290 1 2245 114 0 7 chr11 138938434 138938741 -9844731 + AluSq SINE Alu 1 305 -8 2206 123 7 0 chr11 138938884 138939192 -9844280 - AluSg SINE Alu 0 310 1 21 0 0 0 chr11 138939538 138939559 -9843913 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr11 138940427 138940459 -9843013 + AT_rich Low_complexity Low_complexity 1 32 0 1574 156 53 4 chr11 138941925 138942188 -9841284 + AluJb SINE Alu 1 276 -36 192 40 0 0 chr11 138942188 138942213 -9841259 + (TTG)n Simple_repeat Simple_repeat 2 26 0 24 32 0 0 chr11 138942213 138942244 -9841228 + AT_rich Low_complexity Low_complexity 1 31 0 213 406 58 0 chr11 138942245 138942383 -9841089 - L2 LINE L2 -207 3065 2920 788 267 110 4 chr11 138942452 138942688 -9840784 - MIR SINE MIR 0 262 2 29 28 0 0 chr11 138943158 138943194 -9840278 + AT_rich Low_complexity Low_complexity 1 36 0 2502 126 6 6 chr11 138944098 138944464 -9839008 + MER47A DNA MER2_type 1 366 0 871 195 0 56 chr11 138944590 138944785 -9838687 + MER5A DNA MER1_type 6 189 0 2395 66 3 38 chr11 138945403 138945721 -9837751 - AluSp SINE Alu -6 307 1 1988 150 0 7 chr11 138947154 138947460 -9836012 - AluJb SINE Alu -8 304 1 857 263 14 5 chr11 138947533 138947750 -9835722 + AluJo SINE Alu 2 220 -92 259 113 0 75 chr11 138947750 138947803 -9835669 + AluJo SINE Alu 86 134 -168 273 135 0 0 chr11 138947814 138947866 -9835606 + (CA)n Simple_repeat Simple_repeat 1 52 0 760 197 0 8 chr11 138947885 138948007 -9835465 + FLAM_A SINE Alu 1 121 -12 624 207 140 6 chr11 138948263 138948427 -9835045 - L1ME LINE L1 -319 5802 5617 2305 96 7 0 chr11 138948962 138949264 -9834208 - AluSp SINE Alu 0 313 10 620 106 80 9 chr11 138949268 138949381 -9834091 + MER2 DNA MER2_type 112 232 -113 440 217 123 78 chr11 138949413 138949657 -9833815 + MER112 DNA MER1_type 2 256 0 210 71 0 0 chr11 138949881 138949909 -9833563 + (TG)n Simple_repeat Simple_repeat 1 28 0 207 364 121 0 chr11 138950405 138950504 -9832968 - L3 LINE CR1 -26 1551 1441 247 287 70 16 chr11 138950555 138950684 -9832788 - L1ME4a LINE L1 -12 6109 5974 34 0 0 0 chr11 138951920 138951954 -9831518 + AT_rich Low_complexity Low_complexity 1 34 0 1974 125 39 0 chr11 138952091 138952372 -9831100 + AluSx SINE Alu 1 292 -20 346 213 96 81 chr11 138952372 138952508 -9830964 - HAL1 LINE L1 -41 2466 2329 1446 171 100 11 chr11 138952517 138952798 -9830674 - MER2 DNA MER2_type 0 345 40 1965 134 41 7 chr11 138952866 138953158 -9830314 + AluSg SINE Alu 1 302 -8 1736 158 28 75 chr11 138953225 138953585 -9829887 + MER2 DNA MER2_type 2 344 0 1905 160 0 0 chr11 138953788 138954075 -9829397 - AluJb SINE Alu -25 287 1 284 203 159 0 chr11 138954207 138954276 -9829196 + MIR SINE MIR 74 153 -109 1152 200 49 4 chr11 138954293 138954538 -9828934 - MIR SINE MIR -1 261 6 1083 168 78 93 chr11 138954876 138955198 -9828274 - MER33 DNA MER1_type -3 321 5 213 163 0 23 chr11 138955672 138955715 -9827757 + (TAA)n Simple_repeat Simple_repeat 3 44 0 823 231 31 90 chr11 138955718 138955823 -9827649 - MIR SINE MIR -21 241 131 1678 187 3 19 chr11 138955823 138956133 -9827339 - AluJo SINE Alu -7 305 1 2141 102 0 34 chr11 138956141 138956459 -9827013 - AluSx SINE Alu 0 308 1 823 231 31 90 chr11 138956459 138956599 -9826873 - MIR SINE MIR -138 124 1 189 0 0 0 chr11 138957971 138957992 -9825480 + (T)n Simple_repeat Simple_repeat 1 21 0 291 222 16 0 chr11 138958368 138958431 -9825041 + L2 LINE L2 3209 3272 0 877 230 30 10 chr11 138958945 138959145 -9824327 + AluJb SINE Alu 87 290 -22 809 99 0 0 chr11 138959707 138959808 -9823664 + AluJ/FLAM SINE Alu 2 102 -210 1699 251 148 56 chr11 138959827 138959900 -9823572 - HAL1 LINE L1 -1609 898 833 1988 115 34 3 chr11 138959900 138960196 -9823276 + AluSx SINE Alu 1 305 -7 1699 251 148 56 chr11 138960196 138960940 -9822532 - HAL1 LINE L1 -1674 833 6 875 175 0 12 chr11 138961113 138961273 -9822199 + FRAM SINE Alu 2 159 -17 1670 112 116 14 chr11 138961396 138961673 -9821799 - AluSg SINE Alu -5 305 1 191 88 29 0 chr11 138961768 138961802 -9821670 + (TA)n Simple_repeat Simple_repeat 1 35 0 1548 174 46 21 chr11 138961812 138962094 -9821378 - AluJo SINE Alu -13 289 1 492 240 17 86 chr11 138964183 138964358 -9819114 + MIR SINE MIR 8 170 -92 21 82 0 0 chr11 138964946 138964995 -9818477 + AT_rich Low_complexity Low_complexity 1 49 0 30 0 0 0 chr11 138965491 138965521 -9817951 + AT_rich Low_complexity Low_complexity 1 30 0 815 192 40 13 chr11 138965745 138965896 -9817576 + FRAM SINE Alu 1 154 -22 29 70 0 0 chr11 138966592 138966649 -9816823 + AT_rich Low_complexity Low_complexity 1 57 0 1565 189 14 17 chr11 138966835 138967132 -9816340 - AluJo SINE Alu -16 296 1 316 304 105 39 chr11 138967154 138967335 -9816137 + L3 LINE CR1 565 757 -820 244 286 71 12 chr11 138967339 138967423 -9816049 + L2 LINE L2 3195 3283 -30 1905 172 0 0 chr11 138967423 138967719 -9815753 - AluSx SINE Alu -16 296 1 23 54 0 0 chr11 138967787 138967824 -9815648 + AT_rich Low_complexity Low_complexity 1 37 0 541 266 104 27 chr11 138967908 138968167 -9815305 + L1ME3A LINE L1 5684 5962 -208 1659 169 43 30 chr11 138968694 138968996 -9814476 + AluJo SINE Alu 3 308 -4 263 169 42 70 chr11 138969056 138969127 -9814345 - L1ME LINE L1 -326 5795 5727 330 241 150 8 chr11 138969344 138969477 -9813995 - L1ME LINE L1 -402 5719 5568 23 0 0 0 chr11 138970100 138970123 -9813349 + AT_rich Low_complexity Low_complexity 1 23 0 1279 208 13 42 chr11 138970557 138970865 -9812607 - AluJo SINE Alu -13 299 1 811 228 35 20 chr11 138970886 138971088 -9812384 - MLT1A1 LTR MaLR 0 365 161 1886 124 11 4 chr11 138971108 138971374 -9812098 - AluSx SINE Alu -13 299 32 1734 142 7 17 chr11 138971424 138971712 -9811760 - AluJb SINE Alu -4 308 24 615 209 14 27 chr11 138971780 138971928 -9811544 - MLT1A1 LTR MaLR -219 146 1 1936 161 0 3 chr11 138972065 138972364 -9811108 - AluJo SINE Alu -9 303 6 280 119 48 0 chr11 138972852 138972894 -9810578 + LTR23 LTR ERV1 320 363 -74 1834 198 42 6 chr11 138972938 138973271 -9810201 - MER7A DNA MER2_type 0 346 4 451 264 133 55 chr11 138973280 138973677 -9809795 - L1ME4a LINE L1 -158 5963 5536 26 64 0 0 chr11 138973690 138973737 -9809735 + AT_rich Low_complexity Low_complexity 1 47 0 230 286 12 0 chr11 138974006 138974090 -9809382 - L1P LINE L1 -1089 5057 4973 364 371 73 63 chr11 138974736 138975051 -9808421 - L2 LINE L2 -79 3193 2876 * 481 265 0 10 chr11 138975048 138975150 -9808322 + L2 LINE L2 3171 3271 -1 444 342 75 30 chr11 138975151 138975552 -9807920 - L2 LINE L2 -440 2874 2456 2398 264 211 33 chr11 138975652 138976486 -9806986 + L2 LINE L2 320 1004 -2310 1804 142 57 17 chr11 138976486 138976782 -9806690 - AluSx SINE Alu -4 308 1 2398 264 211 33 chr11 138976782 138977165 -9806307 + L2 LINE L2 1004 1754 -1560 395 156 0 0 chr11 138977296 138977360 -9806112 + Tigger7 DNA MER2_type 49 112 -593 2524 34 7 3 chr11 138977370 138977668 -9805804 + AluY SINE Alu 1 299 -12 1315 166 0 9 chr11 138977676 138977893 -9805579 - AluJb SINE Alu -11 301 87 380 135 0 0 chr11 138977893 138977945 -9805527 + AluSg/x SINE Alu 111 162 -138 576 163 11 0 chr11 138977945 138978037 -9805435 - AluJb SINE Alu -218 94 2 913 233 0 0 chr11 138978037 138978200 -9805272 + Tigger7 DNA MER2_type 104 266 -284 431 138 161 23 chr11 138978198 138978285 -9805187 + Tigger7 DNA MER2_type 2489 2587 0 * 2735 274 97 45 chr11 138978285 138979628 -9803844 + L2 LINE L2 1925 3313 0 434 342 131 19 chr11 138979639 138980104 -9803368 - L2 LINE L2 -1586 1728 1212 24 0 0 0 chr11 138980200 138980224 -9803248 + AT_rich Low_complexity Low_complexity 1 24 0 2439 57 0 45 chr11 138980307 138980621 -9802851 + AluY SINE Alu 1 300 -11 1950 132 10 0 chr11 138981844 138982140 -9801332 + AluSx SINE Alu 9 307 -5 35 41 0 0 chr11 138982201 138982250 -9801222 + AT_rich Low_complexity Low_complexity 1 49 0 634 259 86 26 chr11 138982267 138982499 -9800973 - HAL1b LINE L1 -340 1008 763 615 168 95 89 chr11 138982514 138982704 -9800768 + L1MC4 LINE L1 7554 7744 -298 776 197 58 29 chr11 138982710 138982918 -9800554 - L1MC3 LINE L1 -106 7679 7466 * 3306 114 39 19 chr11 138982915 138983703 -9799769 - L1PBa LINE L1 -5281 1582 636 1073 154 53 0 chr11 138983705 138983893 -9799579 - L1PBa LINE L1 -6665 198 1 4178 152 49 9 chr11 138983907 138984606 -9798866 - L1MB2 LINE L1 -2 6169 5443 2568 179 14 2 chr11 138986058 138986476 -9796996 - MSTB LTR MaLR -3 423 1 250 234 0 0 chr11 138988723 138988770 -9794702 + MER96 DNA MER1_type? 2 48 -127 3421 58 0 0 chr11 138990004 138990432 -9793040 - L1P LINE L1 -1319 4827 4400 527 211 0 18 chr11 138990433 138990542 -9792930 - Tigger6 DNA MER2_type -353 1244 1138 * 1645 210 43 0 chr11 138990533 138990857 -9792615 - Tigger6 DNA MER2_type -1259 338 1 201 295 13 26 chr11 138991309 138991387 -9792085 - L3 LINE CR1 -34 1543 1467 480 341 33 23 chr11 138991478 138991692 -9791780 + MIR SINE MIR 21 236 -26 490 240 10 10 chr11 138992926 138993030 -9790442 - MER81 DNA DNA 0 114 11 2135 95 0 24 chr11 138993146 138993442 -9790030 - AluY SINE Alu -22 289 1 1542 146 49 0 chr11 138993505 138993751 -9789721 - L1MC1 LINE L1 -13 6320 6063 1798 96 8 0 chr11 138993810 138994049 -9789423 - L1PA8 LINE L1 0 6172 5932 30 0 0 0 chr11 138994436 138994466 -9789006 + AT_rich Low_complexity Low_complexity 1 30 0 238 317 14 21 chr11 138994494 138994636 -9788836 + GA-rich Low_complexity Low_complexity 3 143 0 374 334 141 12 chr11 138994764 138995084 -9788388 + L2 LINE L2 1693 2053 -1261 368 205 24 0 chr11 138996203 138996286 -9787186 - MER20 DNA MER1_type -134 85 1 372 305 42 17 chr11 138996526 138996644 -9786828 + MIR SINE MIR 29 149 -113 508 287 56 10 chr11 138997223 138997418 -9786054 - MIR SINE MIR -19 243 40 3868 100 6 8 chr11 138997927 138998439 -9785033 - MER9 LTR ERVK 0 511 1 402 240 125 65 chr11 138998461 138998542 -9784930 - HAL1 LINE L1 -146 2361 2286 2191 111 3 3 chr11 138998542 138998839 -9784633 - AluSp SINE Alu -16 297 1 402 240 125 65 chr11 138998839 138998957 -9784515 - HAL1 LINE L1 -221 2286 2150 554 259 97 40 chr11 138999041 138999227 -9784245 - L2 LINE L2 -134 3179 2974 1280 207 141 47 chr11 138999227 138999653 -9783819 - MER31B LTR ERV1 0 466 1 554 259 97 40 chr11 138999653 138999713 -9783759 - L2 LINE L2 -339 2974 2919 3674 115 43 6 chr11 138999856 139000395 -9783077 - LTR6A LTR ERV1 0 564 6 316 70 0 0 chr11 139000779 139000822 -9782650 - MADE1 DNA Mariner -37 43 1 521 280 71 57 chr11 139000890 139001226 -9782246 - HAL1 LINE L1 -375 2132 1792 1176 216 68 49 chr11 139001226 139001720 -9781752 + MER21B LTR ERV1 1 551 -312 474 244 141 0 chr11 139001989 139002145 -9781327 - MER45A DNA AcHobo 0 178 1 313 209 86 80 chr11 139002306 139002405 -9781067 - L1MC5 LINE L1 -35 7926 7824 2251 126 0 7 chr11 139002405 139002714 -9780758 - AluSq SINE Alu -6 307 1 313 209 86 80 chr11 139002714 139002777 -9780695 - L1MC5 LINE L1 -137 7824 7763 369 319 103 0 chr11 139003236 139003352 -9780120 - L2 LINE L2 -44 3228 3101 2120 135 130 22 chr11 139003352 139003767 -9779705 + LTR46 LTR ERV1 1 460 0 329 145 32 0 chr11 139004023 139004085 -9779387 + LTR33 LTR ERVL 456 519 -2 822 254 69 95 chr11 139004094 139004559 -9778913 - LTR33 LTR ERVL -66 455 3 2423 104 0 0 chr11 139006207 139006516 -9776956 + AluSx SINE Alu 1 309 -3 207 219 0 0 chr11 139006707 139006748 -9776724 + (TA)n Simple_repeat Simple_repeat 1 41 0 264 141 31 16 chr11 139008098 139008162 -9775310 - MER69 DNA AcHobo -19 2507 2443 325 279 0 0 chr11 139008212 139008298 -9775174 - MER69 DNA AcHobo -2439 87 2 394 260 126 8 chr11 139008543 139008670 -9774802 - MIR SINE MIR -108 154 13 2208 132 0 0 chr11 139009520 139009830 -9773642 + AluSq SINE Alu 2 311 -2 316 245 50 93 chr11 139009917 139010056 -9773416 + L2 LINE L2 3180 3312 -1 912 230 11 11 chr11 139010527 139010705 -9772767 + MER5B DNA MER1_type 1 178 0 185 329 14 57 chr11 139011080 139011150 -9772322 - L2 LINE L2 -655 2659 2593 181 284 81 27 chr11 139011521 139011576 -9771896 + L2 LINE L2 3190 3251 -21 1898 102 66 0 chr11 139011576 139011850 -9771622 - AluSx SINE Alu -20 292 1 181 284 81 27 chr11 139011850 139011868 -9771604 + L2 LINE L2 3251 3267 -5 317 324 130 24 chr11 139011893 139012140 -9771332 - L2 LINE L2 -783 2531 2259 2243 99 13 0 chr11 139012226 139012528 -9770944 + AluSg SINE Alu 1 306 -4 193 256 153 66 chr11 139012677 139012919 -9770553 - L2 LINE L2 -1514 1800 1538 226 244 16 98 chr11 139013862 139013985 -9769487 - MIR SINE MIR -44 218 106 301 218 39 13 chr11 139014235 139014313 -9769159 + HAL1 LINE L1 1504 1583 -924 1165 204 188 0 chr11 139014535 139014780 -9768692 + AluJo SINE Alu 2 292 -10 309 253 88 0 chr11 139014801 139014892 -9768580 + L1ME LINE L1 10 108 -5962 969 264 89 65 chr11 139015231 139015903 -9767569 + L1ME LINE L1 536 1296 -4965 2486 80 0 6 chr11 139015903 139016215 -9767257 + AluSg SINE Alu 1 310 0 969 264 89 65 chr11 139016215 139016650 -9766822 + L1ME LINE L1 1296 1719 -4542 382 215 123 31 chr11 139016675 139016870 -9766602 + L1ME LINE L1 1775 1987 -4274 1505 189 11 22 chr11 139016870 139017140 -9766332 + AluJo SINE Alu 1 267 -45 34 55 0 0 chr11 139017174 139017229 -9766243 + AT_rich Low_complexity Low_complexity 1 55 0 1204 230 62 25 chr11 139017302 139017702 -9765770 + L1MC4 LINE L1 7437 7851 -191 2250 108 0 7 chr11 139017804 139018100 -9765372 + AluSx SINE Alu 1 294 -18 781 236 141 0 chr11 139018102 139018344 -9765128 + L1 LINE L1 4118 4393 -1753 1814 195 6 3 chr11 139018358 139018717 -9764755 + L1PA16 LINE L1 5793 6152 -14 6509 231 50 58 chr11 139018735 139018755 -9764717 + L1ME LINE L1 2097 2116 -3964 180 0 0 0 chr11 139018755 139018775 -9764697 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6509 231 50 58 chr11 139018775 139021193 -9762279 + L1ME LINE L1 2116 4513 -1567 2348 106 0 3 chr11 139021193 139021495 -9761977 + AluSx SINE Alu 1 301 -11 6509 231 50 58 chr11 139021495 139022195 -9761277 + L1ME LINE L1 4513 5217 -863 21 57 0 0 chr11 139022198 139022233 -9761239 + AT_rich Low_complexity Low_complexity 1 35 0 4219 178 90 13 chr11 139022257 139023255 -9760217 + L1MD1 LINE L1 4873 5986 -256 2023 173 16 16 chr11 139023255 139023619 -9759853 + MLT1A1 LTR MaLR 2 365 0 4219 178 90 13 chr11 139023619 139023872 -9759600 + L1MD1 LINE L1 5986 6218 -24 305 222 107 44 chr11 139023999 139024117 -9759355 + L1ME3 LINE L1 2024 2133 -4263 2059 155 0 0 chr11 139024117 139024427 -9759045 + AluSx SINE Alu 1 310 -2 305 222 107 44 chr11 139024427 139024578 -9758894 + L1ME3 LINE L1 2133 2310 -4086 2421 69 0 0 chr11 139024652 139024941 -9758531 + AluSp SINE Alu 1 289 -24 470 269 70 38 chr11 139024996 139025203 -9758269 + L1ME3 LINE L1 2366 2592 -3623 805 197 0 0 chr11 139025203 139025335 -9758137 + FLAM_A SINE Alu 1 132 -1 470 269 70 38 chr11 139025335 139025498 -9757974 + L1ME3 LINE L1 2592 2748 -3467 1942 184 78 45 chr11 139025514 139026051 -9757421 + L1MB7 LINE L1 5628 6182 -2 239 197 111 8 chr11 139026157 139026274 -9757198 + L1ME3 LINE L1 2967 3095 -3120 488 233 96 37 chr11 139026312 139026582 -9756890 + L1MC5 LINE L1 7348 7633 -328 696 215 108 76 chr11 139026602 139026745 -9756727 + L1ME3 LINE L1 4959 5096 -1119 1848 163 27 0 chr11 139026745 139027046 -9756426 + AluJb SINE Alu 4 312 0 696 215 108 76 chr11 139027046 139027348 -9756124 + L1ME3 LINE L1 5096 5418 -797 330 248 45 76 chr11 139027350 139027438 -9756034 + L1ME3 LINE L1 5457 5539 -2572 1509 154 0 9 chr11 139027438 139027671 -9755801 + AluJb SINE Alu 82 312 0 330 248 45 76 chr11 139027671 139027739 -9755733 + L1ME3 LINE L1 5539 5608 -2503 374 283 148 9 chr11 139027819 139028077 -9755395 + L1ME3 LINE L1 5626 5919 -312 289 60 0 40 chr11 139028488 139028538 -9754934 + (CA)n Simple_repeat Simple_repeat 1 48 0 215 206 127 16 chr11 139028887 139028950 -9754522 - L2 LINE L2 -230 3083 3014 * 423 297 138 0 chr11 139028944 139029089 -9754383 - L2 LINE L2 -905 2409 2245 908 181 0 0 chr11 139029366 139029510 -9753962 - FRAM SINE Alu -21 155 12 189 0 0 0 chr11 139030533 139030554 -9752918 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 26 93 0 0 chr11 139031217 139031292 -9752180 + AT_rich Low_complexity Low_complexity 1 75 0 2241 95 0 10 chr11 139031382 139031676 -9751796 - AluSg SINE Alu -18 292 2 3860 112 65 36 chr11 139032025 139032225 -9751247 + L1MA5A LINE L1 5550 5743 -554 1797 126 56 7 chr11 139032225 139032511 -9750961 + AluJo SINE Alu 1 300 -12 3860 112 65 36 chr11 139032511 139033035 -9750437 + L1MA5A LINE L1 5743 6295 -2 370 232 30 10 chr11 139033657 139033756 -9749716 + HAL1b LINE L1 251 351 -997 3422 219 83 30 chr11 139033790 139034138 -9749334 + L1MB7 LINE L1 2 330 -6212 2363 96 0 0 chr11 139034138 139034439 -9749033 + AluSx SINE Alu 1 301 -11 3422 219 83 30 chr11 139034439 139034998 -9748474 + L1MB7 LINE L1 330 979 -5563 1851 101 101 17 chr11 139034998 139035286 -9748186 + AluSq SINE Alu 1 312 -1 3422 219 83 30 chr11 139035286 139035462 -9748010 + L1MB7 LINE L1 979 1144 -5398 1676 205 62 6 chr11 139035454 139035922 -9747550 + L1MB7 LINE L1 1435 1928 -4718 * 422 71 0 0 chr11 139035923 139035979 -9747493 - U2 snRNA snRNA -131 57 2 1728 150 7 36 chr11 139035979 139036285 -9747187 - AluJb SINE Alu -15 297 1 308 174 12 12 chr11 139036289 139036375 -9747097 + L1MB7 LINE L1 2740 2825 -3819 556 211 0 53 chr11 139036873 139036987 -9746485 + AluJb SINE Alu 111 218 -94 3834 192 78 64 chr11 139036994 139037288 -9746184 + L1MB7 LINE L1 4371 4660 -2022 2250 82 0 3 chr11 139037288 139037582 -9745890 - AluSg SINE Alu -17 293 1 3834 192 78 64 chr11 139037582 139037913 -9745559 + L1MB7 LINE L1 4660 4985 -1697 1621 167 37 28 chr11 139037913 139038266 -9745206 + MER46B DNA MER2_type 2 232 -4 3834 192 78 64 chr11 139038266 139039917 -9743555 + L1MB7 LINE L1 4985 6660 -22 258 188 0 62 chr11 139039933 139039997 -9743475 + HAL1b LINE L1 376 435 -913 760 202 58 47 chr11 139040211 139040469 -9743003 - L1MC4 LINE L1 -222 7820 7560 527 259 63 29 chr11 139040520 139040725 -9742747 + HAL1b LINE L1 797 1008 -340 35 41 0 0 chr11 139040742 139040791 -9742681 + AT_rich Low_complexity Low_complexity 1 49 0 1945 132 10 0 chr11 139040852 139041148 -9742324 - AluSx SINE Alu -5 307 9 2380 64 0 45 chr11 139042371 139042685 -9740787 - AluY SINE Alu -11 300 1 24 0 0 0 chr11 139042768 139042792 -9740680 + AT_rich Low_complexity Low_complexity 1 24 0 476 350 127 15 chr11 139042888 139043353 -9740119 + L2 LINE L2 1212 1728 -1586 2791 275 97 45 chr11 139043364 139044707 -9738765 - L2 LINE L2 0 3313 1925 391 138 161 23 chr11 139044707 139044794 -9738678 - Tigger7 DNA MER2_type 0 2491 2393 * 839 235 0 0 chr11 139044792 139044954 -9738518 - Tigger7 DNA MER2_type -284 266 105 540 161 11 0 chr11 139044954 139045047 -9738425 + AluJb SINE Alu 1 94 -218 356 135 0 0 chr11 139045047 139045099 -9738373 - AluSg/x SINE Alu -138 164 113 1333 166 0 9 chr11 139045099 139045316 -9738156 + AluJb SINE Alu 87 301 -11 2499 33 7 3 chr11 139045324 139045623 -9737849 - AluY SINE Alu -11 300 1 364 156 0 0 chr11 139045633 139045697 -9737775 - Tigger7 DNA MER2_type -2375 112 49 2443 265 211 33 chr11 139045828 139046211 -9737261 - L2 LINE L2 -1560 1754 1441 1835 136 61 17 chr11 139046211 139046506 -9736966 + AluSx SINE Alu 1 308 -4 2443 265 211 33 chr11 139046506 139047340 -9736132 - L2 LINE L2 -1873 1441 320 467 342 75 30 chr11 139047440 139047841 -9735631 + L2 LINE L2 2456 2874 -440 483 265 0 10 chr11 139047842 139047944 -9735528 - L2 LINE L2 -1 3271 3171 393 371 73 63 chr11 139047941 139048256 -9735216 + L2 LINE L2 2876 3193 -79 * 26 64 0 0 chr11 139049255 139049302 -9734170 + AT_rich Low_complexity Low_complexity 1 47 0 287 268 138 50 chr11 139049328 139049712 -9733760 + L1ME4a LINE L1 5546 5963 -158 1678 198 42 6 chr11 139049721 139050054 -9733418 + MER7A DNA MER2_type 4 346 0 260 119 48 0 chr11 139050098 139050140 -9733332 - LTR23 LTR ERV1 -74 363 320 1956 161 0 3 chr11 139050628 139050927 -9732545 + AluJo SINE Alu 6 303 -9 554 207 14 28 chr11 139051064 139051209 -9732263 + MLT1A1 LTR MaLR 1 143 -222 1745 142 7 17 chr11 139051280 139051568 -9731904 + AluJb SINE Alu 24 308 -4 1889 124 11 4 chr11 139051618 139051883 -9731589 + AluSx SINE Alu 32 298 -14 727 228 35 20 chr11 139051903 139052105 -9731367 + MLT1A1 LTR MaLR 161 365 0 1355 209 13 36 chr11 139052126 139052432 -9731040 + AluJo SINE Alu 1 299 -13 23 0 0 0 chr11 139052866 139052889 -9730583 + AT_rich Low_complexity Low_complexity 1 23 0 317 241 150 8 chr11 139053512 139053645 -9729827 + L1ME LINE L1 5568 5719 -402 257 169 42 70 chr11 139053862 139053933 -9729539 + L1ME LINE L1 5727 5795 -326 207 0 0 0 chr11 139053993 139054016 -9729456 + (T)n Simple_repeat Simple_repeat 1 23 0 255 31 0 0 chr11 139054265 139054297 -9729175 + (T)n Simple_repeat Simple_repeat 1 32 0 489 116 0 0 chr11 139055183 139055252 -9728220 + AluJ/FLAM SINE Alu 1 69 -243 1362 83 0 0 chr11 139055254 139055422 -9728050 + AluSg/x SINE Alu 127 294 -16 2308 88 0 10 chr11 139056317 139056611 -9726861 - AluSg SINE Alu -19 291 1 620 266 90 65 chr11 139056622 139057283 -9726189 - L1ME LINE L1 -5000 1261 536 334 265 204 0 chr11 139057581 139057713 -9725759 - L1ME LINE L1 -5902 168 10 1161 204 188 0 chr11 139057734 139057979 -9725493 - AluJo SINE Alu -10 292 2 325 267 30 10 chr11 139058178 139058279 -9725193 - HAL1 LINE L1 -901 1606 1504 231 36 0 0 chr11 139058453 139058481 -9724991 + (A)n Simple_repeat Simple_repeat 1 28 0 2163 116 0 0 chr11 139058903 139059222 -9724250 - AluSq SINE Alu 0 319 1 1680 161 22 7 chr11 139060048 139060321 -9723151 + AluJo SINE Alu 5 281 -31 * 2307 102 7 3 chr11 139060320 139060624 -9722848 - AluSq SINE Alu -8 305 1 21 0 0 0 chr11 139060638 139060659 -9722813 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr11 139060748 139060777 -9722695 + AT_rich Low_complexity Low_complexity 1 29 0 469 181 0 0 chr11 139061170 139061242 -9722230 + FRAM/FAM SINE Alu 1 64 -112 2023 76 73 24 chr11 139061249 139061537 -9721935 + AluSg SINE Alu 9 310 0 216 143 0 0 chr11 139061743 139061785 -9721687 + (A)n Simple_repeat Simple_repeat 1 42 0 374 297 136 7 chr11 139062366 139062521 -9720951 + MIR SINE MIR 10 184 -78 2069 108 14 4 chr11 139062858 139063170 -9720302 + AluSx SINE Alu 1 315 0 1794 144 7 33 chr11 139064157 139064462 -9719010 + AluSx SINE Alu 1 297 -15 1433 171 19 19 chr11 139065017 139065274 -9718198 - AluJo SINE Alu -27 285 29 634 122 71 0 chr11 139065430 139065528 -9717944 - U6 snRNA snRNA -2 105 1 190 400 0 0 chr11 139065892 139065952 -9717520 - L2 LINE L2 -87 3185 3126 1526 116 5 19 chr11 139065980 139066195 -9717277 - AluSg/x SINE Alu -16 296 85 2368 103 7 0 chr11 139066266 139066567 -9716905 + AluSx SINE Alu 2 304 -8 27 62 0 0 chr11 139066571 139066619 -9716853 + AT_rich Low_complexity Low_complexity 1 48 0 198 0 0 0 chr11 139066788 139066810 -9716662 + (A)n Simple_repeat Simple_repeat 1 22 0 452 301 7 0 chr11 139066891 139067027 -9716445 - FRAM SINE Alu -39 137 1 842 129 0 0 chr11 139067287 139067403 -9716069 + AluJb SINE Alu 4 119 -193 950 137 74 0 chr11 139067467 139067642 -9715830 + L1MD3 LINE L1 7798 7985 -10 2296 105 7 3 chr11 139068588 139068893 -9714579 - AluSq SINE Alu -7 306 1 269 226 57 47 chr11 139070186 139070292 -9713180 - MIR SINE MIR -63 145 39 2108 224 36 25 chr11 139070990 139071543 -9711929 - L1M4 LINE L1 -5593 949 391 1649 166 17 17 chr11 139071545 139071847 -9711625 - AluSx SINE Alu -10 302 1 720 160 0 17 chr11 139071866 139071985 -9711487 - AluJb SINE Alu -194 118 2 246 32 0 0 chr11 139072756 139072787 -9710685 + (T)n Simple_repeat Simple_repeat 1 31 0 212 26 0 79 chr11 139072941 139072979 -9710493 + (A)n Simple_repeat Simple_repeat 1 35 0 412 250 41 12 chr11 139072988 139073124 -9710348 - MER110A LTR ERV1 0 468 340 363 232 20 10 chr11 139073156 139073241 -9710231 - MER110A LTR ERV1 -101 367 282 925 114 87 33 chr11 139073241 139073425 -9710047 - LTR48 LTR ERV1 0 787 594 624 200 37 22 chr11 139073426 139073545 -9709927 + FLAM_A SINE Alu 6 129 -182 899 88 96 7 chr11 139073545 139073681 -9709791 + L1PA10 LINE L1 6021 6168 0 624 200 37 22 chr11 139073681 139073696 -9709776 + FLAM_A SINE Alu 129 142 -169 1971 130 117 5 chr11 139073702 139074070 -9709402 - LTR48 LTR ERV1 -178 609 201 1029 148 145 109 chr11 139074064 139074165 -9709307 - LTR48 LTR ERV1 -491 296 200 * 1978 155 3 3 chr11 139074165 139074469 -9709003 + AluSx SINE Alu 1 304 -8 1029 148 145 109 chr11 139074469 139074614 -9708858 - LTR48 LTR ERV1 -587 200 36 1876 141 61 28 chr11 139074614 139074977 -9708495 - THE1C LTR MaLR 0 375 1 1029 148 145 109 chr11 139074977 139075012 -9708460 - LTR48 LTR ERV1 -751 36 4 2262 102 31 0 chr11 139075063 139075357 -9708115 - AluSx SINE Alu -9 303 1 928 170 18 52 chr11 139075379 139075608 -9707864 - L1MB7 LINE L1 0 6184 5964 2294 115 0 6 chr11 139075608 139075921 -9707551 - AluSq SINE Alu -2 311 1 671 191 0 24 chr11 139075925 139076051 -9707421 - FLAM_A SINE Alu -14 128 6 691 152 0 0 chr11 139076051 139076163 -9707309 - L1MB7 LINE L1 -268 5910 5799 480 183 167 16 chr11 139076205 139076331 -9707141 - MER110A LTR ERV1 -267 201 57 696 249 92 11 chr11 139076766 139076951 -9706521 + LTR54 LTR ERV1 1 200 -310 27 0 0 0 chr11 139076951 139076978 -9706494 + AT_rich Low_complexity Low_complexity 1 27 0 2352 93 3 0 chr11 139077061 139077405 -9706067 - AluSp SINE Alu 0 345 1 1305 173 45 11 chr11 139077405 139077534 -9705938 + LTR54 LTR ERV1 238 361 -149 2189 106 0 13 chr11 139077534 139077837 -9705635 - AluY SINE Alu -12 299 1 2009 122 0 17 chr11 139077838 139078134 -9705338 - AluSc SINE Alu -18 291 1 1305 173 45 11 chr11 139078134 139078306 -9705166 + LTR54 LTR ERV1 360 510 0 391 279 0 0 chr11 139078374 139078453 -9705019 - MER21B LTR ERV1 -767 96 18 2089 118 3 23 chr11 139078560 139078864 -9704608 - AluSx SINE Alu -13 299 2 371 127 0 42 chr11 139079252 139079323 -9704149 - L1MB8 LINE L1 -1 6177 6110 703 189 45 0 chr11 139079324 139079456 -9704016 + FLAM_C SINE Alu 2 139 -4 376 194 0 0 chr11 139079458 139079525 -9703947 - L1MB7 LINE L1 -60 6124 6058 434 184 66 66 chr11 139079566 139079661 -9703811 - L1MB8 LINE L1 -115 6063 5966 1513 219 7 7 chr11 139079661 139079967 -9703505 - AluJo SINE Alu -6 306 1 434 184 66 66 chr11 139079967 139080007 -9703465 - L1MB8 LINE L1 -211 5967 5928 2264 174 109 98 chr11 139080009 139080726 -9702746 - LTR8A LTR ERV1 -2 725 1 437 237 147 19 chr11 139080764 139080920 -9702552 + LTR1 LTR ERV1 42 217 -568 369 215 19 56 chr11 139081006 139081113 -9702359 + LTR1B LTR ERV1 406 508 -318 322 224 56 117 chr11 139081131 139081310 -9702162 + LTR28 LTR ERV1 848 1015 -5 1575 156 33 13 chr11 139081334 139081641 -9701831 - L1MB8 LINE L1 -289 5895 5583 1994 161 0 10 chr11 139081641 139081940 -9701532 - AluJb SINE Alu -16 296 1 2314 99 0 7 chr11 139082121 139082447 -9701025 - AluSq SINE Alu 0 313 1 2339 78 3 3 chr11 139084158 139084453 -9699019 - AluSx SINE Alu -17 295 1 497 269 44 62 chr11 139084498 139084725 -9698747 + MIR SINE MIR 28 250 -12 834 83 52 240 chr11 139084839 139084893 -9698579 - L1MB7 LINE L1 0 6184 6122 1546 193 16 39 chr11 139084893 139085199 -9698273 - AluJo SINE Alu -13 299 1 2424 93 3 0 chr11 139085203 139085504 -9697968 - AluSp SINE Alu -11 302 1 834 83 52 240 chr11 139085504 139085732 -9697740 - L1MB7 LINE L1 -65 6119 5951 526 204 164 108 chr11 139085732 139086056 -9697416 + MER4A LTR ERV1 1 342 -322 537 129 276 0 chr11 139086117 139086233 -9697239 + MER4C LTR ERV1 300 447 -18 1060 177 10 5 chr11 139086257 139086455 -9697017 - L1MB7 LINE L1 -248 5936 5738 930 133 61 47 chr11 139086455 139086654 -9696818 - LTR48 LTR ERV1 0 787 400 1970 147 0 32 chr11 139086660 139086973 -9696499 + AluJb SINE Alu 6 308 -4 1425 129 103 55 chr11 139088028 139088323 -9695149 + AluJb SINE Alu 1 308 0 486 152 41 103 chr11 139088376 139088455 -9695017 + MIR SINE MIR 77 145 -117 2450 54 24 0 chr11 139088455 139088751 -9694721 + AluY SINE Alu 2 304 -7 486 152 41 103 chr11 139088751 139088816 -9694656 + MIR SINE MIR 145 212 -50 282 194 31 71 chr11 139088830 139088928 -9694544 - L1MC4 LINE L1 -1334 6708 6615 438 204 0 0 chr11 139089245 139089338 -9694134 + (TA)n Simple_repeat Simple_repeat 1 93 0 587 164 44 104 chr11 139089445 139089628 -9693844 + MIR SINE MIR 79 250 -12 2949 121 17 2 chr11 139089752 139090222 -9693250 - L1MB4 LINE L1 -2 6178 5702 230 94 0 0 chr11 139090261 139090293 -9693179 - L1MB4 LINE L1 -469 5714 5683 1504 203 165 10 chr11 139090420 139090568 -9692904 + MLT1C LTR MaLR 6 130 -337 1822 139 27 30 chr11 139090568 139090869 -9692603 + AluSx SINE Alu 1 300 -12 1504 203 165 10 chr11 139090869 139091120 -9692352 + MLT1C LTR MaLR 130 467 0 2723 173 34 0 chr11 139091121 139091619 -9691853 + MLT1C-int LTR MaLR 2 516 -855 1896 169 22 214 chr11 139091655 139092009 -9691463 + MLT1C-int LTR MaLR 786 1206 -165 869 148 0 15 chr11 139092009 139092144 -9691328 - FLAM_C SINE Alu 0 133 1 1896 169 22 214 chr11 139092144 139092407 -9691065 + MLT1C-int LTR MaLR 1206 1247 -124 2100 129 0 7 chr11 139092407 139092702 -9690770 + AluSx SINE Alu 1 293 -19 1896 169 22 214 chr11 139092702 139092807 -9690665 + MLT1C-int LTR MaLR 1247 1370 -1 636 213 81 0 chr11 139092808 139092968 -9690504 + MLT1C LTR MaLR 1 173 -294 206 301 82 0 chr11 139093024 139093097 -9690375 - L2 LINE L2 -8 3305 3227 1720 164 0 24 chr11 139093285 139093583 -9689889 + AluJb SINE Alu 1 291 -21 1727 173 0 17 chr11 139093588 139093903 -9689569 + AluSx SINE Alu 1 310 0 182 211 0 0 chr11 139094006 139094044 -9689428 + L2 LINE L2 3234 3271 -1 2561 65 0 0 chr11 139094108 139094416 -9689056 + AluY SINE Alu 1 308 -3 685 167 0 0 chr11 139094595 139094715 -9688757 + FLAM_C SINE Alu 24 143 0 207 0 0 0 chr11 139094757 139094780 -9688692 + (CA)n Simple_repeat Simple_repeat 2 24 0 206 247 129 35 chr11 139094907 139094992 -9688480 - L3 LINE CR1 -1 1576 1484 705 185 8 0 chr11 139095673 139095792 -9687680 + FAM SINE Alu 43 162 -23 182 161 0 54 chr11 139095823 139095879 -9687593 + G-rich Low_complexity Low_complexity 1 53 0 844 148 0 47 chr11 139095934 139096083 -9687389 + FLAM_C SINE Alu 1 142 -1 2836 116 56 17 chr11 139097045 139097487 -9685985 + MER31A LTR ERV1 1 463 -22 2649 54 0 6 chr11 139097487 139097800 -9685672 + AluY SINE Alu 1 311 0 2836 116 56 17 chr11 139097800 139097822 -9685650 + MER31A LTR ERV1 463 483 -2 1410 56 0 0 chr11 139099866 139100046 -9683426 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2255 90 0 24 chr11 139100047 139100367 -9683105 - AluSq SINE Alu 0 313 1 1079 166 0 11 chr11 139100425 139100600 -9682872 - FRAM SINE Alu -11 165 1 672 284 89 0 chr11 139100604 139100829 -9682643 - MIR SINE MIR -3 259 15 877 163 0 20 chr11 139100931 139101084 -9682388 - Charlie4 DNA MER1_type 0 1961 1812 1192 169 21 4 chr11 139101144 139101380 -9682092 + MER33 DNA MER1_type 1 230 -94 24 32 0 0 chr11 139101384 139101415 -9682057 + AT_rich Low_complexity Low_complexity 1 31 0 1914 138 38 0 chr11 139102360 139102650 -9680822 + AluSx SINE Alu 3 303 -9 22 35 0 0 chr11 139102685 139102714 -9680758 + AT_rich Low_complexity Low_complexity 1 29 0 789 148 0 33 chr11 139102714 139102836 -9680636 - FLAM_C SINE Alu -15 118 1 932 190 114 25 chr11 139102883 139103120 -9680352 - MER46C DNA MER2_type -1 337 80 189 121 0 0 chr11 139103204 139103237 -9680235 + (TAA)n Simple_repeat Simple_repeat 1 33 0 776 226 78 9 chr11 139103262 139103479 -9679993 - MIR SINE MIR -16 246 15 2059 107 0 4 chr11 139104703 139105013 -9678459 - AluSg SINE Alu 0 309 1 1563 140 126 34 chr11 139105017 139105310 -9678162 - MER44D DNA MER2_type -19 590 1 203 250 194 0 chr11 139105565 139105637 -9677835 + L2 LINE L2 3223 3308 -5 400 267 26 43 chr11 139105947 139106063 -9677409 + MIR SINE MIR 28 141 -67 21 0 0 0 chr11 139106499 139106520 -9676952 + AT_rich Low_complexity Low_complexity 1 21 0 1918 114 0 36 chr11 139107453 139107759 -9675713 - AluSx SINE Alu -17 295 1 1385 87 0 0 chr11 139108714 139108898 -9674574 - AluSp SINE Alu 0 313 130 844 279 76 21 chr11 139109012 139109249 -9674223 + MIR SINE MIR 13 262 0 234 0 0 0 chr11 139110408 139110434 -9673038 + (T)n Simple_repeat Simple_repeat 1 26 0 21 71 0 0 chr11 139110638 139110680 -9672792 + GC_rich Low_complexity Low_complexity 1 42 0 195 42 0 0 chr11 139110686 139110710 -9672762 + (A)n Simple_repeat Simple_repeat 1 24 0 1430 180 142 67 chr11 139110728 139111109 -9672363 - LTR48 LTR ERV1 -307 480 60 1683 194 0 6 chr11 139111109 139111423 -9672049 - AluJb SINE Alu 0 312 1 1430 180 142 67 chr11 139111423 139111486 -9671986 - LTR48 LTR ERV1 -727 60 3 389 132 0 13 chr11 139111488 139111564 -9671908 - L1M4 LINE L1 -443 5741 5667 2069 196 19 27 chr11 139111672 139112136 -9671336 - HERV3 LTR ERV1 -8033 393 1 566 112 84 47 chr11 139112136 139112243 -9671229 - LTR61 LTR ERV1 0 595 485 * 741 103 37 0 chr11 139112210 139112317 -9671155 + LTR61 LTR ERV1 485 595 0 2108 120 7 0 chr11 139112372 139112680 -9670792 - AluSg SINE Alu 0 310 1 2169 116 3 0 chr11 139112859 139113161 -9670311 - AluSq SINE Alu -10 303 1 1761 179 0 7 chr11 139113179 139113481 -9669991 - AluJb SINE Alu -12 300 1 2947 176 76 80 chr11 139113610 139113791 -9669681 + LTR48 LTR ERV1 1 181 -606 2022 123 0 0 chr11 139113791 139114076 -9669396 + AluSq SINE Alu 1 285 -28 222 37 0 0 chr11 139114086 139114113 -9669359 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2025 123 10 0 chr11 139114115 139114417 -9669055 + AluSg SINE Alu 1 305 -5 2947 176 76 80 chr11 139114417 139115011 -9668461 + LTR48 LTR ERV1 191 787 0 815 165 11 43 chr11 139115011 139115199 -9668273 - MER53 DNA DNA -6 183 2 476 317 79 6 chr11 139115540 139115704 -9667768 - MIR3 SINE MIR -6 202 27 2007 134 0 0 chr11 139116370 139116662 -9666810 - AluSx SINE Alu -20 292 1 2007 88 0 0 chr11 139116680 139116941 -9666531 - AluSg SINE Alu -11 299 39 613 221 44 32 chr11 139117213 139117371 -9666101 - Charlie8 DNA MER1_type -2174 243 84 653 176 9 0 chr11 139117618 139117726 -9665746 - FLAM_C SINE Alu -33 110 2 400 311 41 0 chr11 139117741 139117863 -9665609 + L2 LINE L2 3187 3313 0 1499 180 0 34 chr11 139118267 139118583 -9664889 + AluSx SINE Alu 1 306 0 2236 88 3 25 chr11 139118597 139118914 -9664558 + AluSp SINE Alu 1 310 -3 510 248 8 0 chr11 139119113 139119238 -9664234 + MER103 DNA DNA 38 163 -3 273 155 0 0 chr11 139122198 139122256 -9661216 + CT-rich Low_complexity Low_complexity 2 59 0 224 369 0 0 chr11 139122436 139122501 -9660971 + L3 LINE CR1 1410 1474 -103 368 314 120 37 chr11 139122572 139122763 -9660709 - MIR SINE MIR -36 226 20 221 288 14 41 chr11 139124934 139125007 -9658465 - L2 LINE L2 -5 3308 3238 193 234 0 43 chr11 139125116 139125163 -9658309 - MIR SINE MIR -98 164 120 215 241 259 9 chr11 139125341 139125449 -9658023 + L2 LINE L2 3137 3271 -1 205 315 19 0 chr11 139125867 139125921 -9657551 + MIR SINE MIR 54 108 -154 289 327 107 50 chr11 139126499 139126799 -9656673 + L2 LINE L2 2909 3225 -47 258 304 76 0 chr11 139127313 139127392 -9656080 - L3b LINE CR1 -80 1503 1419 203 295 0 0 chr11 139128090 139128170 -9655302 + GA-rich Low_complexity Low_complexity 1 80 0 261 293 70 51 chr11 139128247 139128404 -9655068 + MIR SINE MIR 49 208 -54 304 200 13 27 chr11 139129112 139129187 -9654285 - HsTC2 DNA Tc2 -1811 87 14 408 230 134 82 chr11 139129291 139129620 -9653852 - L1ME3 LINE L1 -40 6126 5778 399 351 7 26 chr11 139129833 139129984 -9653488 + L2 LINE L2 3124 3271 -1 748 218 127 0 chr11 139130256 139130421 -9653051 + MIR SINE MIR 19 204 -58 243 242 0 0 chr11 139130421 139130483 -9652989 + (TATG)n Simple_repeat Simple_repeat 3 64 0 207 167 24 24 chr11 139130503 139130545 -9652927 + MIR SINE MIR 185 226 -36 485 300 35 18 chr11 139131916 139132086 -9651386 - MIR SINE MIR -88 174 2 328 200 0 0 chr11 139132108 139132173 -9651299 - L3 LINE CR1 -349 1228 1164 2318 77 3 0 chr11 139132983 139133280 -9650192 - AluY SINE Alu -13 298 1 24 0 0 0 chr11 139133283 139133307 -9650165 + AT_rich Low_complexity Low_complexity 1 24 0 1758 144 0 18 chr11 139133342 139133626 -9649846 - AluJb SINE Alu -33 279 1 785 122 81 16 chr11 139133645 139133768 -9649704 - FLAM_C SINE Alu -2 131 1 213 94 0 0 chr11 139134052 139134084 -9649388 + (T)n Simple_repeat Simple_repeat 1 32 0 335 358 52 5 chr11 139134228 139134421 -9649051 - MIR SINE MIR -55 207 6 1775 142 31 14 chr11 139134533 139134822 -9648650 + MER2 DNA MER2_type 52 345 0 1763 140 12 43 chr11 139135111 139135433 -9648039 - AluJb SINE Alu 0 312 1 447 113 0 0 chr11 139136037 139136108 -9647364 + (TC)n Simple_repeat Simple_repeat 2 72 0 1159 155 15 10 chr11 139136682 139136882 -9646590 + AluJb SINE Alu 14 214 -98 242 95 24 0 chr11 139137013 139137055 -9646417 + MADE1 DNA Mariner 1 43 -37 2244 93 0 0 chr11 139137057 139137358 -9646114 - AluY SINE Alu -10 301 1 1805 139 0 34 chr11 139137721 139138016 -9645456 - AluJb SINE Alu -21 291 7 1830 191 34 17 chr11 139138237 139138594 -9644878 - MLT1A1 LTR MaLR -2 363 1 2129 112 3 0 chr11 139139659 139139955 -9643517 - AluSx SINE Alu -15 297 1 275 242 12 146 chr11 139140087 139140252 -9643220 - HAL1 LINE L1 -10 2497 2355 1053 247 116 44 chr11 139140285 139140595 -9642877 - MER74B LTR ERVL -125 497 148 1714 159 3 36 chr11 139140595 139140903 -9642569 - AluSx SINE Alu -14 298 1 1053 247 116 44 chr11 139140903 139141005 -9642467 - MER74B LTR ERVL -474 148 55 853 257 123 74 chr11 139141005 139141650 -9641822 - HAL1 LINE L1 -557 1950 1275 503 285 0 0 chr11 139141660 139141811 -9641661 - L1M4 LINE L1 -2229 3917 3767 2729 233 59 26 chr11 139141832 139142362 -9641110 - L1ME2 LINE L1 -8 6156 5645 1822 78 4 0 chr11 139142362 139142606 -9640866 - L1PA13 LINE L1 0 6163 5919 2729 233 59 26 chr11 139142606 139142803 -9640669 - L1ME2 LINE L1 -519 5645 5456 333 0 0 0 chr11 139142803 139142840 -9640632 + (TG)n Simple_repeat Simple_repeat 2 38 0 1729 156 14 0 chr11 139142841 139143124 -9640348 - AluJb SINE Alu -25 287 1 2729 233 59 26 chr11 139143124 139143213 -9640259 - L1ME2 LINE L1 -708 5456 5371 2217 105 0 0 chr11 139143213 139143508 -9639964 - AluSg SINE Alu -15 295 1 2729 233 59 26 chr11 139143508 139143648 -9639824 - L1ME2 LINE L1 -793 5371 5146 1085 173 147 37 chr11 139143648 139143920 -9639552 + AluJo SINE Alu 1 302 0 234 0 0 0 chr11 139144052 139144078 -9639394 + (T)n Simple_repeat Simple_repeat 1 26 0 1940 60 0 0 chr11 139144094 139144329 -9639143 - AluY SINE Alu -76 235 1 3076 166 70 11 chr11 139144441 139144898 -9638574 + LTR28 LTR ERV1 1 430 -590 2237 112 0 3 chr11 139144898 139145211 -9638261 - AluSx SINE Alu 0 312 1 3076 166 70 11 chr11 139145211 139145677 -9637795 + LTR28 LTR ERV1 430 1020 0 880 145 0 0 chr11 139145821 139145952 -9637520 - AluJb SINE Alu -15 297 167 180 111 0 0 chr11 139146156 139146183 -9637289 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 2202 101 0 0 chr11 139146206 139146502 -9636970 + AluSx SINE Alu 11 306 -6 4577 108 64 37 chr11 139146530 139147252 -9636220 + MER4B-int LTR ERV1 4452 5192 -1566 558 161 0 0 chr11 139147253 139147340 -9636132 - AluS SINE Alu -224 88 2 3999 134 28 30 chr11 139147341 139147876 -9635596 - MER57-int LTR ERV1 -2688 4070 3535 2246 100 0 0 chr11 139147876 139148176 -9635296 - AluSg SINE Alu -10 300 1 3999 134 28 30 chr11 139148176 139148281 -9635191 - MER57-int LTR ERV1 -3223 3535 3431 2322 71 0 0 chr11 139148285 139148581 -9634891 - AluY SINE Alu -13 298 3 1833 156 45 20 chr11 139148584 139148981 -9634491 - MER57-int LTR ERV1 -3661 3097 2691 2469 142 16 0 chr11 139148981 139149369 -9634103 - MER57A LTR ERV1 0 403 10 26019 92 47 60 chr11 139149404 139151216 -9632256 - MER57-int LTR ERV1 0 7537 5704 1843 124 10 49 chr11 139151216 139151523 -9631949 + AluSx SINE Alu 1 295 -17 26019 92 47 60 chr11 139151523 139152249 -9631223 - MER57-int LTR ERV1 -1833 5704 4971 1892 146 3 0 chr11 139152249 139152537 -9630935 - AluSx SINE Alu -21 291 3 26019 92 47 60 chr11 139152537 139152742 -9630730 - MER57-int LTR ERV1 -2566 4971 4765 2009 123 0 0 chr11 139152742 139153027 -9630445 - AluSg SINE Alu -25 285 1 26019 92 47 60 chr11 139153027 139153056 -9630416 - MER57-int LTR ERV1 -2772 4765 4737 2090 112 3 0 chr11 139153056 139153352 -9630120 + AluSp SINE Alu 1 297 -16 26019 92 47 60 chr11 139153352 139153830 -9629642 - MER57-int LTR ERV1 -2800 4737 4255 2354 57 0 20 chr11 139153830 139154131 -9629341 - AluY SINE Alu -16 295 1 26019 92 47 60 chr11 139154131 139155211 -9628261 - MER57-int LTR ERV1 -3282 4255 2586 1573 211 48 46 chr11 139155211 139155543 -9627929 + MER50 LTR ERV1 1 336 -398 2114 100 41 3 chr11 139155543 139155833 -9627639 - AluSc SINE Alu -8 301 1 1573 211 48 46 chr11 139155833 139155935 -9627537 + MER50 LTR ERV1 336 436 -298 3757 143 79 2 chr11 139155963 139156531 -9626941 + LTR9 LTR ERV1 1 612 0 10068 139 21 44 chr11 139156536 139156800 -9626672 + HUERS-P3b LTR ERV1 5 274 -8645 2263 101 7 3 chr11 139156800 139157098 -9626374 - AluSx SINE Alu -13 299 1 10068 139 21 44 chr11 139157098 139158520 -9624952 + HUERS-P3b LTR ERV1 274 1652 -7267 6278 97 18 13 chr11 139158517 139159665 -9623807 + HUERS-P3b LTR ERV1 1769 2642 -4776 * 2453 189 30 2 chr11 139159665 139160094 -9623378 - LTR8 LTR ERV1 -250 441 1 20650 97 9 24 chr11 139160094 139161239 -9622233 + HUERS-P3b LTR ERV1 3073 4233 -3185 2276 118 0 3 chr11 139161239 139161552 -9621920 + AluSx SINE Alu 1 312 0 20650 97 9 24 chr11 139161552 139162837 -9620635 + HUERS-P3b LTR ERV1 4233 5454 -1964 2277 110 3 0 chr11 139162837 139163136 -9620336 - AluSp SINE Alu -13 300 1 20650 97 9 24 chr11 139163136 139163705 -9619767 + HUERS-P3b LTR ERV1 5454 6030 -1388 378 136 0 161 chr11 139163705 139163786 -9619686 + LTR9 LTR ERV1 545 612 0 1303 218 23 0 chr11 139163786 139164052 -9619420 + MER50 LTR ERV1 463 734 0 1650 139 15 40 chr11 139164052 139164107 -9619365 - MER57A-int LTR ERV1 -4259 3278 3223 1944 172 0 3 chr11 139164107 139164415 -9619057 - AluSx SINE Alu -5 307 1 1650 139 15 40 chr11 139164415 139164633 -9618839 - MER57A-int LTR ERV1 -4314 3223 3012 12943 163 40 38 chr11 139164633 139166670 -9616802 - MER57A-int LTR ERV1 -3875 2388 357 2123 133 7 0 chr11 139166670 139166972 -9616500 - AluSx SINE Alu -8 304 1 12943 163 40 38 chr11 139166972 139167228 -9616244 - MER57A-int LTR ERV1 -5906 357 498 1804 168 0 19 chr11 139167228 139167569 -9615903 + AluSx SINE Alu 4 312 0 12943 163 40 38 chr11 139167569 139168070 -9615402 - MER57A-int LTR ERV1 -5764 499 1 2359 137 22 51 chr11 139168070 139168485 -9614987 - MER57A LTR ERV1 0 403 1 3694 116 78 8 chr11 139168485 139169178 -9614294 - MER4B-int LTR ERV1 -2823 2192 1968 43968 30 21 2 chr11 139169192 139175223 -9608249 - L1HS LINE L1 0 6155 3 1097 77 69 81 chr11 139175227 139175266 -9608206 - MER4B-int LTR ERV1 -4798 1960 1922 2423 83 0 13 chr11 139175266 139175567 -9607905 + AluY SINE Alu 2 298 -13 1097 77 69 81 chr11 139175567 139175773 -9607699 - MER4B-int LTR ERV1 -4836 1922 1718 4157 142 17 36 chr11 139175808 139176575 -9606897 - MER4D LTR ERV1 -163 665 4 184 271 139 23 chr11 139176583 139176712 -9606760 - L2 LINE L2 -1607 1707 1564 249 340 9 9 chr11 139176756 139176862 -9606610 + MER5A DNA MER1_type 50 155 -34 252 261 126 27 chr11 139177049 139177160 -9606312 + MIR SINE MIR 81 202 -60 1900 243 58 18 chr11 139177167 139177681 -9605791 + L1MEc LINE L1 38 572 -5824 1603 201 4 0 chr11 139177717 139177996 -9605476 - AluJb SINE Alu -31 281 2 246 156 0 0 chr11 139177996 139178041 -9605431 + (TA)n Simple_repeat Simple_repeat 1 45 0 1499 212 55 22 chr11 139178073 139178530 -9604942 + L1MEc LINE L1 597 1068 -5328 264 234 94 16 chr11 139178764 139178892 -9604580 - L1ME3A LINE L1 -230 5940 5803 425 250 18 9 chr11 139179005 139179117 -9604355 - Charlie8 DNA MER1_type -2222 195 83 2159 105 0 24 chr11 139179446 139179740 -9603732 + AluSx SINE Alu 1 287 -25 36 0 0 0 chr11 139179775 139179811 -9603661 + AT_rich Low_complexity Low_complexity 1 36 0 345 285 65 16 chr11 139179906 139180029 -9603443 + MIR SINE MIR 12 140 -122 2015 107 20 34 chr11 139180058 139180192 -9603280 + AluSx SINE Alu 1 135 -177 297 0 0 0 chr11 139180192 139180225 -9603247 + (CA)n Simple_repeat Simple_repeat 2 34 0 2015 107 20 34 chr11 139180225 139180388 -9603084 + AluSx SINE Alu 135 294 -18 1217 63 0 0 chr11 139180391 139180533 -9602939 + AluSq/x SINE Alu 1 142 -170 465 103 0 0 chr11 139180533 139180601 -9602871 + Alu SINE Alu 235 302 -10 1631 210 13 16 chr11 139180610 139180830 -9602642 + L1MB3 LINE L1 4769 4989 -1157 1324 208 38 0 chr11 139180830 139180946 -9602526 + AluJb SINE Alu 1 111 -201 405 0 0 0 chr11 139180946 139180991 -9602481 + (CA)n Simple_repeat Simple_repeat 1 45 0 1324 208 38 0 chr11 139180991 139181163 -9602309 + AluJb SINE Alu 111 300 -12 1631 210 13 16 chr11 139181163 139181314 -9602158 + L1MB3 LINE L1 4989 5139 -1007 1381 83 10 21 chr11 139181316 139181508 -9601964 + AluY SINE Alu 105 294 -17 2832 153 40 46 chr11 139181510 139182191 -9601281 + L1MB3 LINE L1 5134 5807 -373 1722 185 3 13 chr11 139182213 139182526 -9600946 - AluJo SINE Alu -2 310 1 4376 196 28 45 chr11 139182567 139183434 -9600038 - MER21B LTR ERV1 -11 852 1 2068 138 5 60 chr11 139183437 139183553 -9599919 + L1MB3 LINE L1 5808 5929 -254 2453 72 0 0 chr11 139183553 139183845 -9599627 - AluY SINE Alu -19 292 1 2068 138 5 60 chr11 139183845 139184126 -9599346 + L1MB3 LINE L1 5929 6183 0 2232 102 0 0 chr11 139184161 139184454 -9599018 + AluSx SINE Alu 12 304 -8 902 185 13 57 chr11 139184454 139184629 -9598843 - L1MEc LINE L1 -987 5228 5064 2150 146 0 0 chr11 139184629 139184938 -9598534 - AluSx SINE Alu -3 309 1 902 185 13 57 chr11 139184938 139184989 -9598483 - L1MEc LINE L1 -1151 5064 5012 499 214 0 0 chr11 139185012 139185110 -9598362 - FLAM_A SINE Alu -44 98 1 1111 241 16 60 chr11 139185117 139185582 -9597890 - L1MEc LINE L1 -1194 5021 4606 * 4734 245 87 27 chr11 139185568 139187011 -9596461 - L1MEc LINE L1 -2268 3947 2373 288 0 0 0 chr11 139187011 139187043 -9596429 + (TG)n Simple_repeat Simple_repeat 2 33 0 4734 245 87 27 chr11 139187043 139187832 -9595640 - L1MEc LINE L1 -3842 2373 1633 528 264 13 13 chr11 139187817 139187972 -9595500 - L1MEc LINE L1 -6198 198 44 * 540 273 62 117 chr11 139187975 139188455 -9595017 - HAL1 LINE L1 -1238 1269 816 620 201 67 8 chr11 139188462 139188596 -9594876 + FLAM_C SINE Alu 2 143 0 1628 133 3 70 chr11 139188617 139188919 -9594553 + AluJo SINE Alu 20 301 -11 1634 183 11 3 chr11 139188925 139189209 -9594263 + AluJb SINE Alu 9 294 -18 659 285 134 37 chr11 139189330 139189898 -9593574 - HAL1 LINE L1 -1838 669 47 1385 215 0 39 chr11 139189987 139190298 -9593174 + AluJo SINE Alu 1 299 -13 1678 155 50 14 chr11 139190631 139190908 -9592564 - AluJb SINE Alu -25 287 1 1830 127 17 37 chr11 139191139 139191439 -9592033 + AluJo SINE Alu 3 296 -16 1867 144 10 37 chr11 139191977 139192275 -9591197 - AluJb SINE Alu -20 292 3 2150 119 0 55 chr11 139195130 139195457 -9588015 - AluSx SINE Alu -3 309 1 1897 159 0 3 chr11 139195457 139195747 -9587725 - AluJb SINE Alu -12 300 12 191 244 22 0 chr11 139196206 139196251 -9587221 - L2 LINE L2 -5 3308 3263 1891 169 0 0 chr11 139196848 139197150 -9586322 - AluJb SINE Alu -10 302 1 281 247 179 80 chr11 139198302 139198357 -9585115 - MIR SINE MIR 0 262 214 2088 125 3 13 chr11 139198357 139198660 -9584812 - AluSx SINE Alu -12 300 1 281 247 179 80 chr11 139198660 139198766 -9584706 - MIR SINE MIR -48 214 85 792 178 13 121 chr11 139198766 139198859 -9584613 - MER67C LTR ERV1 0 710 609 2126 127 0 7 chr11 139198859 139199166 -9584306 - AluSx SINE Alu -7 305 1 792 178 13 121 chr11 139199166 139199303 -9584169 - MER67C LTR ERV1 -101 609 505 593 226 67 113 chr11 139199310 139199380 -9584092 - MER67C LTR ERV1 -379 331 259 2315 107 3 0 chr11 139199380 139199689 -9583783 - AluSg SINE Alu 0 310 1 593 226 67 113 chr11 139199689 139199963 -9583509 - MER67C LTR ERV1 -451 259 3 266 292 15 0 chr11 139199974 139200039 -9583433 - MIR SINE MIR -180 82 17 1323 116 0 0 chr11 139200662 139200843 -9582629 + L1MA2 LINE L1 6124 6304 0 22 35 0 0 chr11 139200933 139200962 -9582510 + AT_rich Low_complexity Low_complexity 1 29 0 251 234 0 43 chr11 139200980 139201074 -9582398 + L1MC4 LINE L1 6614 6703 -1339 934 105 15 15 chr11 139201092 139201225 -9582247 - AluSq/x SINE Alu -180 133 1 222 37 0 0 chr11 139201288 139201315 -9582157 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1733 147 18 18 chr11 139201318 139201604 -9581868 - AluSq SINE Alu -26 287 2 2161 118 0 0 chr11 139203112 139203400 -9580072 - AluSx SINE Alu -24 288 1 2393 97 0 0 chr11 139203467 139203775 -9579697 - AluSg SINE Alu -2 308 1 270 315 0 22 chr11 139203780 139203872 -9579600 + MER5B DNA MER1_type 4 93 -85 180 0 0 0 chr11 139204559 139204579 -9578893 + (T)n Simple_repeat Simple_repeat 1 20 0 395 321 60 8 chr11 139204865 139204999 -9578473 - L2 LINE L2 -7 3265 3125 391 314 26 32 chr11 139205084 139205240 -9578232 - MIR3 SINE MIR 0 208 54 2473 80 3 0 chr11 139205251 139205550 -9577922 + AluSx SINE Alu 1 300 -12 346 241 190 78 chr11 139207541 139207773 -9575699 - L1ME4a LINE L1 -2 6119 5862 2522 67 0 7 chr11 139208180 139208479 -9574993 + AluSq SINE Alu 1 297 -16 403 251 62 17 chr11 139208805 139208984 -9574488 - L1ME4a LINE L1 -2 6119 5933 304 132 0 0 chr11 139209038 139209131 -9574341 - FLAM_A SINE Alu 0 173 81 * 401 145 0 0 chr11 139209128 139209190 -9574282 - Alu SINE Alu -4 298 237 1730 148 0 25 chr11 139209190 139209473 -9573999 + AluJo SINE Alu 28 303 -9 248 83 0 0 chr11 139209537 139209573 -9573899 - L1PA16 LINE L1 -39 6127 6092 616 192 8 17 chr11 139209573 139209693 -9573779 - AluJb SINE Alu -130 182 64 400 150 0 75 chr11 139209693 139209773 -9573699 - L1PA16 LINE L1 -81 6085 6012 1751 228 42 67 chr11 139210417 139210667 -9572805 - L1MC5 LINE L1 -60 7901 7646 2440 105 0 0 chr11 139210667 139210972 -9572500 - AluSx SINE Alu -7 305 1 1751 228 42 67 chr11 139210972 139211455 -9572017 - L1MC5 LINE L1 -315 7646 7186 183 339 0 0 chr11 139211554 139211619 -9571853 + L3b LINE CR1 1317 1381 -202 1336 140 23 9 chr11 139211621 139211835 -9571637 + AluJo SINE Alu 85 301 -11 212 0 36 0 chr11 139211841 139211869 -9571603 + (CAA)n Simple_repeat Simple_repeat 2 30 0 490 286 81 12 chr11 139212072 139212233 -9571239 - MIR SINE MIR -80 182 11 482 263 110 20 chr11 139213550 139213752 -9569720 - MIR SINE MIR -10 252 32 2216 109 3 0 chr11 139213915 139214208 -9569264 - AluSp SINE Alu -19 294 1 500 237 0 0 chr11 139214837 139214934 -9568538 + MER5A DNA MER1_type 10 106 -83 2459 94 0 3 chr11 139215477 139215784 -9567688 + AluSx SINE Alu 1 306 -6 397 242 76 30 chr11 139217743 139217875 -9565597 + MIR SINE MIR 20 157 -105 2126 120 3 29 chr11 139218118 139218427 -9565045 - AluSq SINE Alu -12 301 1 268 246 0 0 chr11 139218880 139218949 -9564523 + L3 LINE CR1 1281 1349 -228 1934 145 0 47 chr11 139219026 139219343 -9564129 - AluJb SINE Alu -10 302 1 290 368 35 0 chr11 139219572 139219716 -9563756 - MER5B DNA MER1_type -29 149 1 192 314 43 0 chr11 139220010 139220080 -9563392 - MIR3 SINE MIR -11 197 125 2221 114 26 10 chr11 139221030 139221336 -9562136 - AluSx SINE Alu -1 311 1 244 243 72 54 chr11 139221538 139221649 -9561823 - Charlie8 DNA MER1_type -1911 506 394 2097 110 0 0 chr11 139221651 139221923 -9561549 - AluSg SINE Alu 0 310 39 593 230 42 30 chr11 139222195 139222360 -9561112 - Charlie8 DNA MER1_type -2174 243 77 625 176 9 0 chr11 139222600 139222708 -9560764 - FLAM_C SINE Alu -33 110 2 394 303 41 0 chr11 139222723 139222845 -9560627 + L2 LINE L2 3187 3313 0 1625 184 0 34 chr11 139223249 139223565 -9559907 + AluSx SINE Alu 1 306 0 2386 89 3 25 chr11 139223579 139223895 -9559577 + AluSp SINE Alu 1 309 -4 494 248 8 0 chr11 139224094 139224219 -9559253 + MER103 DNA DNA 38 163 -3 246 164 0 0 chr11 139227177 139227232 -9556240 + CT-rich Low_complexity Low_complexity 2 56 0 215 369 0 0 chr11 139227412 139227477 -9555995 + L3 LINE CR1 1410 1474 -103 322 319 120 37 chr11 139227548 139227739 -9555733 - MIR SINE MIR -36 226 20 203 288 14 41 chr11 139229912 139229985 -9553487 - L2 LINE L2 -5 3308 3238 180 267 0 133 chr11 139230051 139230141 -9553331 - MIR SINE MIR -65 197 120 190 250 259 9 chr11 139230319 139230427 -9553045 + L2 LINE L2 3137 3271 -1 192 315 19 0 chr11 139230845 139230899 -9552573 + MIR SINE MIR 54 108 -154 268 337 103 47 chr11 139231478 139231778 -9551694 + L2 LINE L2 2909 3225 -47 245 304 76 0 chr11 139232167 139232246 -9551226 - L3b LINE CR1 -80 1503 1419 203 295 0 0 chr11 139232942 139233022 -9550450 + GA-rich Low_complexity Low_complexity 1 80 0 242 293 70 51 chr11 139233099 139233256 -9550216 + MIR SINE MIR 49 208 -54 310 187 13 27 chr11 139233964 139234039 -9549433 - HsTC2 DNA Tc2 -1811 87 14 380 230 134 82 chr11 139234143 139234472 -9549000 - L1ME3 LINE L1 -40 6126 5778 373 351 7 26 chr11 139234685 139234836 -9548636 + L2 LINE L2 3124 3271 -1 721 222 123 0 chr11 139235102 139235273 -9548199 + MIR SINE MIR 13 204 -58 264 226 0 0 chr11 139235275 139235337 -9548135 + (TATATG)n Simple_repeat Simple_repeat 5 66 0 447 300 35 18 chr11 139236771 139236941 -9546531 - MIR SINE MIR -88 174 2 321 200 0 0 chr11 139236963 139237028 -9546444 - L3 LINE CR1 -349 1228 1164 2448 84 3 0 chr11 139237838 139238135 -9545337 - AluY SINE Alu -13 298 1 25 0 0 0 chr11 139238138 139238163 -9545309 + AT_rich Low_complexity Low_complexity 1 25 0 703 122 0 0 chr11 139238198 139238296 -9545176 - AluJb SINE Alu -33 279 182 214 155 35 35 chr11 139238577 139238635 -9544837 - MER91A DNA MER1_type -109 87 30 1598 201 88 6 chr11 139238765 139239201 -9544271 + L1MB7 LINE L1 5684 6165 -2 573 288 40 0 chr11 139239592 139239769 -9543703 + MIR SINE MIR 46 229 -33 2900 13 0 0 chr11 139240855 139241165 -9542307 - AluYa5 SINE Alu -1 310 1 406 230 18 9 chr11 139241675 139241788 -9541684 + AluSq/x SINE Alu 37 150 -162 363 274 59 7 chr11 139242071 139242206 -9541266 + MIR3 SINE MIR 42 183 -25 282 186 17 0 chr11 139243686 139243745 -9539727 + MER5B DNA MER1_type 7 66 -112 362 209 152 0 chr11 139243771 139243876 -9539596 + MER5B DNA MER1_type 51 171 -7 340 233 190 0 chr11 139244883 139244999 -9538473 - MIR SINE MIR -19 243 106 368 287 80 74 chr11 139245101 139245352 -9538120 + MIR SINE MIR 17 262 0 459 35 0 0 chr11 139245408 139245465 -9538007 + (TC)n Simple_repeat Simple_repeat 1 57 0 203 143 0 48 chr11 139245467 139245509 -9537963 + (TTCTCC)n Simple_repeat Simple_repeat 1 40 0 181 129 32 0 chr11 139246881 139246912 -9536560 - MER5A DNA MER1_type 0 189 158 255 275 233 16 chr11 139248615 139248804 -9534668 + MIR SINE MIR 20 249 -13 208 292 73 96 chr11 139250991 139251210 -9532262 + L2 LINE L2 2604 2817 -497 202 314 0 38 chr11 139251720 139251825 -9531647 + GA-rich Low_complexity Low_complexity 1 101 0 288 53 0 0 chr11 139252436 139252474 -9530998 + (TG)n Simple_repeat Simple_repeat 1 38 0 227 290 196 29 chr11 139253182 139253320 -9530152 - L2 LINE L2 -2 3270 3110 592 273 82 23 chr11 139254109 139254329 -9529143 - MIR SINE MIR -10 252 20 318 35 35 18 chr11 139255277 139255334 -9528138 + (CA)n Simple_repeat Simple_repeat 1 58 0 201 277 0 0 chr11 139257164 139257211 -9526261 + MIR SINE MIR 53 99 -163 233 269 77 19 chr11 139257353 139257457 -9526015 + MIR SINE MIR 79 188 -74 34 24 0 0 chr11 139257585 139257626 -9525846 + AT_rich Low_complexity Low_complexity 1 41 0 632 167 7 51 chr11 139258299 139258437 -9525035 + FLAM_C SINE Alu 2 133 0 256 111 0 0 chr11 139259255 139259291 -9524181 - U2 snRNA snRNA -152 36 1 513 237 36 38 chr11 139259406 139259581 -9523891 + MIR SINE MIR 20 192 -70 377 298 116 0 chr11 139260141 139260262 -9523210 + L2 LINE L2 3137 3271 -1 615 231 61 58 chr11 139260273 139260550 -9522922 - L1ME4a LINE L1 -294 5827 5550 * 4330 164 14 21 chr11 139260545 139260755 -9522717 + L1MD2 LINE L1 4908 5118 -1124 2252 113 0 0 chr11 139260755 139261055 -9522417 + AluSx SINE Alu 1 300 -12 4330 164 14 21 chr11 139261055 139262025 -9521447 + L1MD2 LINE L1 5118 6077 -165 216 0 0 0 chr11 139262025 139262049 -9521423 + (CA)n Simple_repeat Simple_repeat 2 25 0 4330 164 14 21 chr11 139262049 139262202 -9521270 + L1MD2 LINE L1 6077 6230 -12 538 292 55 33 chr11 139262868 139263089 -9520383 - MIR SINE MIR 0 262 27 219 222 93 0 chr11 139263737 139263791 -9519681 - L2 LINE L2 -1 3312 3254 2360 67 19 22 chr11 139263820 139264132 -9519340 - AluY SINE Alu 0 311 1 228 182 0 0 chr11 139264199 139264243 -9519229 + CT-rich Low_complexity Low_complexity 4 47 0 554 304 21 10 chr11 139264631 139264833 -9518639 + MIR SINE MIR 10 212 -50 345 297 86 31 chr11 139265431 139265559 -9517913 + MIR SINE MIR 122 256 -6 271 313 80 0 chr11 139265708 139265820 -9517652 - MIR SINE MIR -50 212 92 423 226 183 7 chr11 139266266 139266403 -9517069 + MIR SINE MIR 28 188 -74 368 302 90 5 chr11 139266404 139266609 -9516863 + MIR SINE MIR 16 237 -25 743 257 54 18 chr11 139266651 139266873 -9516599 + MIR SINE MIR 33 262 0 2063 141 0 0 chr11 139267789 139268096 -9515376 - AluSx SINE Alu 0 307 1 309 308 103 6 chr11 139268996 139269152 -9514320 - MIR SINE MIR -34 228 58 229 325 36 0 chr11 139269355 139269438 -9514034 + MIR3 SINE MIR 104 189 -19 351 0 0 0 chr11 139269933 139269972 -9513500 + (TG)n Simple_repeat Simple_repeat 1 39 0 361 277 15 31 chr11 139270278 139270408 -9513064 + MER5A DNA MER1_type 17 144 -45 285 295 42 11 chr11 139271800 139271895 -9511577 + L2 LINE L2 3175 3272 0 2312 72 10 3 chr11 139271990 139272283 -9511189 - AluY SINE Alu -16 295 1 336 350 0 0 chr11 139272385 139272482 -9510990 + L2 LINE L2 3122 3218 -54 257 0 30 0 chr11 139272721 139272754 -9510718 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1006 228 0 5 chr11 139272845 139273047 -9510425 + MER3 DNA MER1_type 1 201 -8 1814 144 20 27 chr11 139273057 139273356 -9510116 - AluSx SINE Alu -11 301 5 222 191 0 0 chr11 139274337 139274384 -9509088 + (TG)n Simple_repeat Simple_repeat 1 47 0 611 309 58 4 chr11 139274755 139274998 -9508474 - L2 LINE L2 -251 3062 2807 2399 99 0 6 chr11 139277325 139277638 -9505834 + AluSx SINE Alu 1 311 -1 1355 100 12 96 chr11 139278788 139279039 -9504433 - MER30 DNA MER1_type 0 230 1 330 248 197 7 chr11 139279428 139279565 -9503907 + MIR SINE MIR 88 250 -12 23 0 0 0 chr11 139279795 139279818 -9503654 + AT_rich Low_complexity Low_complexity 1 23 0 356 333 34 7 chr11 139279846 139279993 -9503479 + L2 LINE L2 3122 3272 0 360 200 21 0 chr11 139280749 139280844 -9502628 + L1PA14 LINE L1 6065 6161 0 252 330 95 14 chr11 139281041 139281229 -9502243 - MIR3 SINE MIR -39 223 15 216 0 0 0 chr11 139281729 139281753 -9501719 + (CACCC)n Simple_repeat Simple_repeat 4 27 0 272 282 47 0 chr11 139281848 139281933 -9501539 - MIR SINE MIR -12 250 162 589 206 0 22 chr11 139283128 139283264 -9500208 - MIR SINE MIR -28 234 102 222 284 62 0 chr11 139283443 139283524 -9499948 - MIR SINE MIR -101 161 76 452 271 86 0 chr11 139284385 139284525 -9498947 - MER63 DNA MER1_type -281 781 4 404 269 17 25 chr11 139284627 139284746 -9498726 - L2 LINE L2 -44 3228 3111 460 259 191 0 chr11 139286662 139286809 -9496663 - MER5A DNA MER1_type -14 175 1 282 265 10 69 chr11 139286993 139287095 -9496377 + L2 LINE L2 2957 3052 -220 458 303 17 17 chr11 139288128 139288306 -9495166 + MER5A DNA MER1_type 10 187 -2 618 240 240 24 chr11 139289977 139290269 -9493203 + L2 LINE L2 2959 3313 0 264 301 87 20 chr11 139290418 139290577 -9492895 + MIR SINE MIR 6 171 -37 * 1284 321 155 41 chr11 139290554 139291848 -9491624 + L3 LINE CR1 120 1560 -17 792 221 9 72 chr11 139292657 139292879 -9490593 - MER63A DNA MER1_type -1 209 2 360 271 135 8 chr11 139293205 139293355 -9490117 + MIR SINE MIR 15 187 -48 338 109 0 0 chr11 139293480 139293526 -9489946 + Alu SINE Alu 12 57 -251 1912 168 13 7 chr11 139294018 139294327 -9489145 + AluJo SINE Alu 1 311 -1 361 197 28 0 chr11 139294346 139294417 -9489055 - MIR SINE MIR -82 180 108 1118 48 0 0 chr11 139294980 139295127 -9488345 + L1PA5 LINE L1 6007 6153 -1 268 349 71 16 chr11 139295171 139295297 -9488175 + MIR SINE MIR 20 152 -56 281 253 10 40 chr11 139295422 139295521 -9487951 + L2 LINE L2 3169 3264 -49 468 244 109 40 chr11 139295731 139295932 -9487540 + MIR SINE MIR 48 262 0 245 247 59 24 chr11 139296169 139296254 -9487218 + MIR SINE MIR 94 181 -81 1208 84 0 0 chr11 139296514 139296668 -9486804 - AluSp/q SINE Alu -1 312 159 1169 53 0 0 chr11 139296668 139296799 -9486673 + AluSp SINE Alu 3 133 -180 216 313 0 30 chr11 139298619 139298686 -9484786 - MIR SINE MIR -81 181 117 * 343 237 127 42 chr11 139298685 139298803 -9484669 + L2 LINE L2 3145 3272 0 2364 125 0 0 chr11 139301393 139301705 -9481767 - AluSx SINE Alu 0 312 1 192 280 0 0 chr11 139304359 139304409 -9479063 + L2 LINE L2 3256 3305 -8 360 0 0 0 chr11 139306809 139306849 -9476623 + (TG)n Simple_repeat Simple_repeat 1 40 0 210 37 0 0 chr11 139308854 139308881 -9474591 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 581 135 0 10 chr11 139309839 139309943 -9473529 + (TTCC)n Simple_repeat Simple_repeat 1 103 0 324 311 9 9 chr11 139310053 139310159 -9473313 + MIR3 SINE MIR 93 198 -10 228 290 60 60 chr11 139310162 139310262 -9473210 + MIR SINE MIR 25 124 -84 2229 105 13 16 chr11 139315301 139315607 -9467865 - AluSc SINE Alu -4 305 1 2419 99 0 0 chr11 139315614 139315917 -9467555 - AluSg SINE Alu -7 303 1 273 392 58 0 chr11 139316058 139316229 -9467243 - MIR SINE MIR 0 262 82 1836 232 83 16 chr11 139316396 139316904 -9466568 + Tigger8 DNA MER2_type 25 566 -100 314 303 202 0 chr11 139318747 139318866 -9464606 - MIR3 SINE MIR -22 186 44 270 167 0 0 chr11 139318885 139318927 -9464545 - L2 LINE L2 -18 3254 3213 274 285 187 30 chr11 139318927 139319393 -9464079 + HAL1 LINE L1 1231 1769 -738 202 255 35 35 chr11 139319658 139319799 -9463673 + (TATAA)n Simple_repeat Simple_repeat 4 144 0 398 196 36 56 chr11 139319812 139320196 -9463276 + (TTATA)n Simple_repeat Simple_repeat 1 376 0 277 143 125 0 chr11 139320275 139320331 -9463141 + HAL1b LINE L1 835 897 -451 383 303 36 42 chr11 139320546 139320711 -9462761 + L1ME4a LINE L1 5768 5931 -190 1146 136 0 6 chr11 139320854 139321023 -9462449 - FRAM SINE Alu -16 160 1 396 277 8 31 chr11 139321199 139321329 -9462143 - MIR3 SINE MIR 0 208 82 663 283 20 86 chr11 139321635 139321786 -9461686 - MIR SINE MIR -6 256 125 1923 166 0 16 chr11 139321786 139322100 -9461372 + AluJb SINE Alu 3 311 -1 663 283 20 86 chr11 139322100 139322192 -9461280 - MIR SINE MIR -137 125 29 393 22 0 0 chr11 139323106 139323152 -9460320 + (TG)n Simple_repeat Simple_repeat 2 47 0 258 322 11 11 chr11 139324305 139324392 -9459080 + MER5A DNA MER1_type 66 152 -37 258 81 0 0 chr11 139325968 139326005 -9457467 + (TG)n Simple_repeat Simple_repeat 1 37 0 729 267 104 21 chr11 139327471 139327846 -9455626 - L1ME4a LINE L1 -206 5915 5510 330 277 54 54 chr11 139327857 139327987 -9455485 - MIR SINE MIR -113 149 20 456 122 0 0 chr11 139328314 139328396 -9455076 + (TC)n Simple_repeat Simple_repeat 1 82 0 216 380 14 0 chr11 139328396 139328467 -9455005 - L2 LINE L2 -94 3178 3107 209 312 64 47 chr11 139330169 139330403 -9453069 + L2 LINE L2 2720 2957 -357 270 248 147 101 chr11 139330907 139331125 -9452347 + MIR SINE MIR 34 261 -1 345 245 61 41 chr11 139331344 139331442 -9452030 + L2 LINE L2 3121 3220 -52 213 308 46 0 chr11 139332233 139332298 -9451174 + L2 LINE L2 3205 3272 0 340 294 76 8 chr11 139332389 139332508 -9450964 - MIR SINE MIR -71 191 65 189 0 0 0 chr11 139332844 139332865 -9450607 + (CA)n Simple_repeat Simple_repeat 2 22 0 361 216 216 9 chr11 139333567 139333683 -9449789 + MIR3 SINE MIR 28 167 -41 268 241 66 109 chr11 139333799 139333936 -9449536 - MIR SINE MIR -60 202 72 866 190 88 51 chr11 139334609 139334630 -9448842 + MER58A DNA MER1_type 1 20 -2400 1744 200 40 3 chr11 139334630 139334980 -9448492 + MLT1A1 LTR MaLR 3 365 0 866 190 88 51 chr11 139334980 139335106 -9448366 + MER58A DNA MER1_type 20 161 -2259 2233 115 33 0 chr11 139335106 139335437 -9448035 - MER2 DNA MER2_type -2 342 1 866 190 88 51 chr11 139335437 139335504 -9447968 + MER58A DNA MER1_type 161 224 0 248 336 86 8 chr11 139335560 139335688 -9447784 + L2 LINE L2 2923 3060 -212 421 313 0 0 chr11 139335729 139335860 -9447612 + MER94 DNA DNA 1 131 -3 504 295 139 39 chr11 139336631 139337184 -9446288 + L2 LINE L2 2648 3261 -52 6082 126 75 21 chr11 139337200 139337657 -9445815 + Tigger1 DNA MER2_type 1 432 -1986 1766 158 75 36 chr11 139337657 139338018 -9445454 - THE1C LTR MaLR 0 375 1 6082 126 75 21 chr11 139338018 139338301 -9445171 + Tigger1 DNA MER2_type 432 698 -1720 2131 123 0 44 chr11 139338301 139338618 -9444854 + AluSx SINE Alu 1 303 -9 6082 126 75 21 chr11 139338618 139338936 -9444536 + Tigger1 DNA MER2_type 698 1118 -1300 325 308 67 51 chr11 139339221 139339416 -9444056 + MIR3 SINE MIR 5 202 -6 404 277 77 15 chr11 139339504 139339634 -9443838 + MIR SINE MIR 33 170 -92 540 252 116 13 chr11 139339658 139339813 -9443659 + L2 LINE L2 3143 3313 0 225 65 0 0 chr11 139340662 139340693 -9442779 + (TG)n Simple_repeat Simple_repeat 2 32 0 2387 197 16 4 chr11 139341789 139342282 -9441190 - L1MB4 LINE L1 -6 6174 5676 515 309 73 66 chr11 139342567 139342839 -9440633 + L2 LINE L2 2999 3272 0 372 259 130 8 chr11 139342930 139343061 -9440411 + MIR SINE MIR 110 256 -6 1368 239 141 35 chr11 139343068 139343206 -9440266 - L2 LINE L2 -2 3311 3189 2290 118 0 0 chr11 139343206 139343511 -9439961 + AluSc SINE Alu 2 306 -3 1368 239 141 35 chr11 139343511 139344194 -9439278 - L2 LINE L2 -124 3189 2392 270 292 0 0 chr11 139344656 139344721 -9438751 + (CA)n Simple_repeat Simple_repeat 1 65 0 254 337 128 12 chr11 139344732 139344990 -9438482 + L2 LINE L2 2199 2486 -828 223 355 0 0 chr11 139345105 139345181 -9438291 + L2 LINE L2 2686 2761 -553 246 354 71 22 chr11 139345334 139345513 -9437959 - MIR SINE MIR -57 151 9 462 161 0 0 chr11 139346297 139346409 -9437063 + (TG)n Simple_repeat Simple_repeat 2 113 0 208 137 0 59 chr11 139347594 139347645 -9435827 + (TTTC)n Simple_repeat Simple_repeat 1 48 0 195 129 0 0 chr11 139348344 139348375 -9435097 + (TGGA)n Simple_repeat Simple_repeat 2 32 0 1873 119 75 17 chr11 139348465 139348758 -9434714 + AluSq SINE Alu 3 312 -1 227 350 19 10 chr11 139348984 139349087 -9434385 - L2 LINE L2 -94 3219 3116 745 272 256 25 chr11 139349805 139350290 -9433182 - L3 LINE CR1 -7 1570 974 285 29 0 0 chr11 139350292 139350326 -9433146 + (TTTC)n Simple_repeat Simple_repeat 1 34 0 862 151 0 0 chr11 139350428 139350554 -9432918 + AluSg/x SINE Alu 176 301 -9 10385 116 9 9 chr11 139350554 139352164 -9431308 + Tigger1 DNA MER2_type 808 2418 0 247 293 132 9 chr11 139352644 139352750 -9430722 + L2 LINE L2 3185 3303 -10 216 0 0 0 chr11 139353329 139353353 -9430119 + (T)n Simple_repeat Simple_repeat 1 24 0 219 36 0 0 chr11 139353908 139353936 -9429536 + (CAGGG)n Simple_repeat Simple_repeat 3 30 0 265 290 47 19 chr11 139354631 139354738 -9428734 - MIR SINE MIR 0 262 153 743 186 77 22 chr11 139354759 139354942 -9428530 + MER3 DNA MER1_type 1 193 -16 250 325 0 0 chr11 139354996 139355079 -9428393 - MIR SINE MIR -177 85 3 200 297 94 16 chr11 139355198 139355262 -9428210 - L2 LINE L2 -63 3209 3141 280 309 55 110 chr11 139355702 139355993 -9427479 + L2 LINE L2 2912 3186 -86 445 239 78 42 chr11 139356498 139356640 -9426832 - MIR SINE MIR -70 192 46 670 121 30 0 chr11 139356640 139356739 -9426733 - AluSg/x SINE Alu -12 297 196 21 36 0 0 chr11 139356801 139356829 -9426643 + AT_rich Low_complexity Low_complexity 1 28 0 224 237 136 42 chr11 139357222 139357340 -9426132 + L2 LINE L2 3172 3300 -13 416 366 68 36 chr11 139357899 139358140 -9425332 + L3 LINE CR1 31 288 -1289 2410 98 0 0 chr11 139358140 139358446 -9425026 - AluSg SINE Alu -4 306 1 416 366 68 36 chr11 139358446 139358540 -9424932 + L3 LINE CR1 288 377 -1200 195 161 196 36 chr11 139359532 139359588 -9423884 + L2 LINE L2 3208 3272 0 188 88 59 0 chr11 139359593 139359627 -9423845 + (TGGA)n Simple_repeat Simple_repeat 3 38 0 2569 153 19 2 chr11 139359833 139360252 -9423220 - MSTB LTR MaLR 0 426 1 306 297 57 37 chr11 139360391 139360579 -9422893 + MIR SINE MIR 3 191 -62 967 249 100 0 chr11 139361209 139361438 -9422034 - MIR SINE MIR 0 262 11 534 146 0 0 chr11 139361471 139361581 -9421891 + (GA)n Simple_repeat Simple_repeat 2 111 0 252 248 87 81 chr11 139361804 139361965 -9421507 + MIR3 SINE MIR 5 166 -42 22 0 0 0 chr11 139362591 139362613 -9420859 + AT_rich Low_complexity Low_complexity 1 22 0 241 303 65 74 chr11 139362805 139363142 -9420330 - L2 LINE L2 0 3272 2939 398 267 66 42 chr11 139364145 139364341 -9419131 - MIR SINE MIR -56 206 2 192 307 91 11 chr11 139364427 139364515 -9418957 + MIR3 SINE MIR 114 208 0 262 261 51 94 chr11 139365599 139365737 -9417735 - MIR3 SINE MIR -62 146 15 240 35 0 0 chr11 139366076 139366105 -9417367 + (CAGGG)n Simple_repeat Simple_repeat 1 29 0 2508 104 303 135 chr11 139367795 139368611 -9414861 + pTR5 LTR ERV1 1486 2438 0 254 219 125 0 chr11 139369303 139369367 -9414105 + MIR SINE MIR 111 182 -80 197 268 84 14 chr11 139373240 139373311 -9410161 - MIR SINE MIR -152 110 35 431 308 38 49 chr11 139373620 139373730 -9409742 + MIR3 SINE MIR 25 134 -74 2227 141 82 34 chr11 139373730 139374142 -9409330 + MSTB1 LTR MaLR 1 432 0 431 308 38 49 chr11 139374142 139374216 -9409256 + MIR3 SINE MIR 134 207 -1 243 341 103 16 chr11 139375422 139375548 -9407924 - L2 LINE L2 -15 3257 3121 499 245 87 58 chr11 139376424 139376632 -9406840 - MIR SINE MIR -38 224 11 339 78 0 0 chr11 139377103 139377154 -9406318 + (TC)n Simple_repeat Simple_repeat 2 52 0 213 39 0 0 chr11 139377154 139377180 -9406292 + (CA)n Simple_repeat Simple_repeat 1 26 0 195 269 104 0 chr11 139377640 139377707 -9405765 + L2 LINE L2 3173 3246 -26 299 233 70 0 chr11 139377858 139377944 -9405528 + MER96 DNA MER1_type? 84 175 0 2188 225 74 40 chr11 139378508 139379281 -9404191 - L1M4 LINE L1 -1195 4951 4153 281 248 0 9 chr11 139379281 139379390 -9404082 + CT-rich Low_complexity Low_complexity 3 110 0 553 258 12 18 chr11 139379390 139379557 -9403915 - L1M4 LINE L1 -1984 4162 3997 512 242 30 79 chr11 139379726 139380131 -9403341 + L1M4c LINE L1 1287 1671 -4713 466 343 17 21 chr11 139380132 139380365 -9403107 + L1M4c LINE L1 2154 2385 -4178 235 200 8 200 chr11 139380365 139380446 -9403026 + L1M4c LINE L1 2346 2441 -3941 2420 167 29 15 chr11 139380446 139380901 -9402571 + L1PA16 LINE L1 5706 6166 0 235 200 8 200 chr11 139380901 139381084 -9402388 + L1M4c LINE L1 2441 2559 -3823 244 369 146 3 chr11 139383146 139383433 -9400039 - L2 LINE L2 -823 2491 2164 226 316 26 0 chr11 139384182 139384258 -9399214 + MIR3 SINE MIR 129 206 -2 840 244 38 38 chr11 139384987 139385249 -9398223 - MIR SINE MIR 0 262 1 2579 71 3 0 chr11 139386373 139386684 -9396788 - AluSx SINE Alu 0 312 1 225 282 176 84 chr11 139386776 139386907 -9396565 + MIR3 SINE MIR 21 163 -45 345 182 19 188 chr11 139386960 139387114 -9396358 - L2 LINE L2 0 3313 3186 1507 155 53 100 chr11 139387114 139387196 -9396276 + MLT1B LTR MaLR 1 85 -482 2421 95 3 0 chr11 139387196 139387501 -9395971 - AluSq SINE Alu -6 307 2 1507 155 53 100 chr11 139387501 139387826 -9395646 + MLT1B LTR MaLR 85 567 0 224 341 64 51 chr11 139387826 139388122 -9395350 - L2 LINE L2 -160 3112 2813 1082 213 11 82 chr11 139388445 139388674 -9394798 - MIR SINE MIR 0 262 55 1892 147 23 3 chr11 139388674 139388974 -9394498 + AluSg SINE Alu 1 306 -4 1082 213 11 82 chr11 139388974 139389026 -9394446 - MIR SINE MIR -207 55 1 238 236 82 64 chr11 139389041 139389151 -9394321 - MIR3 SINE MIR -93 115 4 2241 69 22 4 chr11 139389333 139389635 -9393837 - AluSc SINE Alu 0 307 1 203 146 24 0 chr11 139389869 139389910 -9393562 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 180 274 29 69 chr11 139389914 139390016 -9393456 - L2 LINE L2 -182 3090 2993 207 250 0 0 chr11 139390368 139390408 -9393064 + polypurine Low_complexity Low_complexity 5 44 0 245 348 28 50 chr11 139391526 139391667 -9391805 + MIR3 SINE MIR 1 138 -70 216 0 0 0 chr11 139392003 139392027 -9391445 + (CAG)n Simple_repeat Simple_repeat 1 24 0 295 255 10 69 chr11 139393687 139393789 -9389683 - MER53 DNA DNA -71 118 23 * 355 182 0 0 chr11 139393735 139393801 -9389671 + MER53 DNA DNA 124 189 0 2036 150 0 0 chr11 139395494 139395780 -9387692 + AluSx SINE Alu 12 297 -15 414 336 78 23 chr11 139396666 139398067 -9385405 + L1ME LINE L1 4338 5824 -340 264 289 79 42 chr11 139398294 139398634 -9384838 + LTR16A1 LTR ERVL 59 455 -2 261 286 73 117 chr11 139399743 139399991 -9383481 - L2 LINE L2 0 3272 3036 781 289 29 14 chr11 139400439 139400716 -9382756 + L3 LINE CR1 1170 1450 -127 7351 38 5 1 chr11 139400722 139401594 -9381878 + L1PA5 LINE L1 5280 6154 0 456 156 42 0 chr11 139401601 139401697 -9381775 + L1MCa LINE L1 137 236 -6190 429 232 11 0 chr11 139401739 139401834 -9381638 + L1MCa LINE L1 234 329 -6097 256 236 36 18 chr11 139401964 139402129 -9381343 + (TATATG)n Simple_repeat Simple_repeat 2 169 0 231 235 78 46 chr11 139402129 139402282 -9381190 + HAL1 LINE L1 2212 2369 -138 245 295 57 25 chr11 139402762 139402884 -9380588 - L2 LINE L2 -1291 2023 1898 626 182 95 40 chr11 139403434 139403579 -9379893 + MER20 DNA MER1_type 2 154 -65 1374 199 11 8 chr11 139403579 139403845 -9379627 + Tigger7 DNA MER2_type 1 267 -466 567 180 0 10 chr11 139403843 139403943 -9379529 + Tigger7 DNA MER2_type 2489 2587 0 * 393 176 0 0 chr11 139403943 139404017 -9379455 + MER20 DNA MER1_type 146 219 0 602 248 119 15 chr11 139404223 139404425 -9379047 - MIR SINE MIR -21 241 19 275 344 54 15 chr11 139406067 139406202 -9377270 - MIR SINE MIR -58 150 28 1983 164 0 0 chr11 139406615 139406919 -9376553 + AluSx SINE Alu 1 304 -8 234 228 25 51 chr11 139407143 139407222 -9376250 + L2 LINE L2 3236 3312 -1 1360 89 0 0 chr11 139407350 139407518 -9375954 + AluSg/x SINE Alu 135 302 -10 308 329 0 0 chr11 139408819 139408901 -9374571 + L3 LINE CR1 324 405 -1172 207 315 116 48 chr11 139408894 139409145 -9374327 + L2 LINE L2 2707 2974 -340 * 2096 126 23 16 chr11 139409189 139409498 -9373974 - AluSx SINE Alu -1 311 1 326 336 43 14 chr11 139409768 139409908 -9373564 + L2 LINE L2 3127 3270 -2 * 1872 306 124 34 chr11 139409900 139410890 -9372582 + L3 LINE CR1 399 1477 -100 486 294 100 85 chr11 139410955 139411465 -9372007 + L2 LINE L2 2725 3248 -24 1336 217 73 40 chr11 139413092 139413615 -9369857 + L2 LINE L2 2708 3312 -1 2306 104 0 0 chr11 139413886 139414225 -9369247 + AluSx SINE Alu 1 312 0 258 327 109 36 chr11 139415689 139415854 -9367618 + MIR3 SINE MIR 32 208 0 1374 196 58 10 chr11 139415883 139416194 -9367278 - MER58B DNA MER1_type -11 330 5 2393 81 10 0 chr11 139416826 139417122 -9366350 - AluSx SINE Alu -13 299 1 198 313 109 16 chr11 139419036 139419164 -9364308 + L2 LINE L2 2880 3019 -253 301 242 0 81 chr11 139422673 139422772 -9360700 + L2 LINE L2 2551 2641 -673 21 0 0 0 chr11 139422801 139422822 -9360650 + AT_rich Low_complexity Low_complexity 1 21 0 552 239 95 17 chr11 139423098 139423369 -9360103 - L1ME3 LINE L1 -208 5962 5678 2244 227 50 17 chr11 139423390 139423989 -9359483 + MER20B DNA MER1_type 1 619 -164 942 278 82 23 chr11 139423990 139424475 -9358997 - L1ME3 LINE L1 -1156 4990 4477 218 172 86 35 chr11 139424896 139424954 -9358518 - MIR3 SINE MIR -38 170 110 602 258 82 94 chr11 139425137 139425467 -9358005 + L2 LINE L2 2947 3272 0 188 254 169 0 chr11 139426716 139426775 -9356697 - MIR SINE MIR -80 182 114 225 250 60 71 chr11 139427072 139427156 -9356316 - L2 LINE L2 -28 3244 3162 302 230 15 37 chr11 139427288 139427397 -9356075 - MER5A DNA MER1_type -80 109 4 724 212 35 12 chr11 139427714 139427884 -9355588 - MER5B DNA MER1_type 0 178 5 723 277 17 11 chr11 139428839 139429016 -9354456 + MIR SINE MIR 1 178 -84 272 150 0 0 chr11 139430093 139430133 -9353339 + MER63 DNA MER1_type 1 40 -170 1738 179 52 0 chr11 139430136 139430465 -9353007 + MER63 DNA MER1_type 717 1062 0 347 210 37 119 chr11 139430539 139430746 -9352726 - MIR SINE MIR -48 214 14 753 275 39 21 chr11 139431941 139432174 -9351298 - MIR SINE MIR -21 241 5 804 195 54 39 chr11 139432881 139432927 -9350545 - MER3 DNA MER1_type 0 209 165 279 0 0 0 chr11 139432927 139432958 -9350514 + (TTTTA)n Simple_repeat Simple_repeat 4 34 0 2067 139 0 0 chr11 139432967 139433255 -9350217 - AluSx SINE Alu -24 288 1 804 195 54 39 chr11 139433255 139433403 -9350069 - MER3 DNA MER1_type -51 158 2 949 183 37 0 chr11 139433520 139433684 -9349788 + MER5A DNA MER1_type 1 170 -19 521 322 51 8 chr11 139433703 139433939 -9349533 - MIR SINE MIR 0 262 17 380 152 258 96 chr11 139434480 139434658 -9348814 - MIR SINE MIR -10 252 46 201 74 0 0 chr11 139436005 139436032 -9347440 + (A)n Simple_repeat Simple_repeat 1 27 0 28 29 0 0 chr11 139436117 139436152 -9347320 + AT_rich Low_complexity Low_complexity 1 35 0 184 232 29 72 chr11 139436660 139436729 -9346743 + MIR3 SINE MIR 118 183 -25 541 214 102 17 chr11 139437213 139437388 -9346084 + MIR3 SINE MIR 25 208 0 4686 289 120 33 chr11 139437724 139437887 -9345585 + L2 LINE L2 322 469 -2844 2055 148 3 10 chr11 139437887 139438190 -9345282 - AluJb SINE Alu -11 301 1 4686 289 120 33 chr11 139438190 139438212 -9345260 + L2 LINE L2 469 488 -2825 1245 191 17 17 chr11 139438212 139438468 -9345004 - L1MA6 LINE L1 -11 6289 6031 656 152 9 0 chr11 139438468 139438573 -9344899 - U6 snRNA snRNA -1 106 1 1245 191 17 17 chr11 139438573 139438609 -9344863 - L1MA6 LINE L1 -268 6032 5997 4686 289 120 33 chr11 139438609 139441153 -9342319 + L2 LINE L2 488 3306 -7 273 311 19 38 chr11 139441273 139441379 -9342093 - L3 LINE CR1 -10 1567 1464 475 318 141 14 chr11 139441840 139442060 -9341412 + MIR SINE MIR 4 251 -11 189 0 0 0 chr11 139442316 139442337 -9341135 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 594 266 84 7 chr11 139442337 139442491 -9340981 - MIR3 SINE MIR -10 198 33 513 326 115 5 chr11 139443595 139443813 -9339659 + MIR SINE MIR 20 261 -1 493 207 0 0 chr11 139446132 139446219 -9337253 + L2 LINE L2 3227 3313 0 428 150 12 0 chr11 139448349 139448429 -9335043 + (CA)n Simple_repeat Simple_repeat 2 82 0 385 164 14 14 chr11 139449827 139449900 -9333572 + MIR SINE MIR 75 147 -61 223 337 79 0 chr11 139450035 139450136 -9333336 - MIR SINE MIR -58 150 42 2326 92 3 0 chr11 139450829 139451122 -9332350 - AluY SINE Alu -17 294 1 273 332 20 47 chr11 139452934 139453084 -9330388 - MIR SINE MIR -59 149 3 258 313 23 8 chr11 139453232 139453360 -9330112 + GA-rich Low_complexity Low_complexity 2 131 0 468 269 48 14 chr11 139455066 139455211 -9328261 - MIR SINE MIR -67 195 46 2308 104 0 22 chr11 139455632 139455948 -9327524 + AluSc SINE Alu 1 309 0 1876 148 16 35 chr11 139455951 139456268 -9327204 + AluJo SINE Alu 1 311 -1 229 211 0 39 chr11 139456734 139456786 -9326686 - MIR3 SINE MIR -2 206 157 234 62 0 0 chr11 139456841 139456873 -9326599 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 517 294 100 39 chr11 139458410 139458641 -9324831 - MIR SINE MIR -5 257 13 420 271 89 59 chr11 139460446 139460649 -9322823 + L2 LINE L2 3104 3312 -1 247 288 0 38 chr11 139460860 139460940 -9322532 - MIR SINE MIR -11 251 175 276 225 56 45 chr11 139460947 139461036 -9322436 + MIR SINE MIR 54 143 -65 353 350 48 0 chr11 139461067 139461170 -9322302 + L2 LINE L2 3150 3257 -15 449 197 69 25 chr11 139461528 139461678 -9321794 - MIR SINE MIR -60 148 32 319 320 130 59 chr11 139462382 139462635 -9320837 - L2 LINE L2 -3 3269 2999 362 250 152 8 chr11 139462793 139462925 -9320547 + MIR SINE MIR 101 251 -11 451 347 77 22 chr11 139463492 139463815 -9319657 + L2 LINE L2 2430 2770 -544 184 339 161 31 chr11 139463895 139464217 -9319255 + L2 LINE L2 2909 3272 0 184 30 61 0 chr11 139464324 139464357 -9319115 + (TA)n Simple_repeat Simple_repeat 2 36 0 300 312 13 65 chr11 139465202 139465356 -9318116 + MIR3 SINE MIR 35 180 -28 233 216 31 62 chr11 139465733 139465830 -9317642 + L1MC5 LINE L1 7833 7926 -35 787 158 0 8 chr11 139465914 139466034 -9317438 + FLAM_A SINE Alu 1 119 -14 1790 135 20 26 chr11 139466034 139466338 -9317134 - AluSp SINE Alu -1 312 11 963 270 80 54 chr11 139466633 139467059 -9316413 - L2 LINE L2 0 3313 2877 305 311 104 22 chr11 139467262 139467397 -9316075 + L2 LINE L2 3127 3272 0 1034 230 84 47 chr11 139467585 139467901 -9315571 + MLT1C LTR MaLR 1 337 -130 2226 135 6 15 chr11 139467901 139468241 -9315231 - MER1B DNA MER1_type 0 337 1 1034 230 84 47 chr11 139468241 139468328 -9315144 + MLT1C LTR MaLR 337 419 -48 252 266 161 16 chr11 139468364 139468488 -9314984 + MIR SINE MIR 114 255 -7 962 228 30 35 chr11 139470842 139471074 -9312398 - MIR SINE MIR -3 259 29 2441 88 7 3 chr11 139471484 139471789 -9311683 - AluSx SINE Alu -6 306 1 2278 188 38 30 chr11 139472315 139472816 -9310656 - MLT1D LTR MaLR 0 505 1 260 265 20 10 chr11 139473231 139473329 -9310143 + L1MC5 LINE L1 7819 7917 -44 364 290 91 44 chr11 139474827 139475027 -9308445 - MIR SINE MIR -12 250 45 322 275 64 9 chr11 139476791 139476900 -9306572 - MIR SINE MIR -64 144 30 237 302 0 0 chr11 139477185 139477248 -9306224 - L3 LINE CR1 -1 1576 1514 617 256 170 27 chr11 139477298 139477521 -9305951 - MIR SINE MIR -3 259 5 225 0 0 0 chr11 139478001 139478026 -9305446 + (A)n Simple_repeat Simple_repeat 1 25 0 364 242 31 43 chr11 139478213 139478374 -9305098 - L1MC5 LINE L1 -295 7666 7508 2169 247 60 47 chr11 139478379 139479206 -9304266 - L1ME3A LINE L1 -5 6165 5328 634 275 124 26 chr11 139479206 139479479 -9303993 - L1ME3A LINE L1 -3561 2585 2286 836 174 25 0 chr11 139479506 139479667 -9303805 - L1MB2 LINE L1 -17 6154 5990 1783 116 39 0 chr11 139479897 139480155 -9303317 - AluSp SINE Alu -45 268 1 21 0 0 0 chr11 139480156 139480177 -9303295 + AT_rich Low_complexity Low_complexity 1 21 0 2054 171 3 12 chr11 139480223 139480569 -9302903 + MER2 DNA MER2_type 1 343 -1 189 143 65 13 chr11 139480846 139480923 -9302549 + (TA)n Simple_repeat Simple_repeat 2 82 0 320 246 14 0 chr11 139480929 139480998 -9302474 + L1MCa LINE L1 1995 2064 -4362 328 139 56 42 chr11 139481006 139481078 -9302394 + L1MCa LINE L1 1992 2064 -4362 286 151 57 0 chr11 139481101 139481154 -9302318 + FLAM_A SINE Alu 54 109 -24 219 152 93 7 chr11 139481203 139481354 -9302118 + (TA)n Simple_repeat Simple_repeat 2 165 0 191 305 127 72 chr11 139481786 139482117 -9301355 - L2 LINE L2 0 3272 2924 188 222 0 0 chr11 139482692 139482737 -9300735 - L2 LINE L2 -303 2969 2925 186 273 0 73 chr11 139482877 139482932 -9300540 + L2 LINE L2 3211 3261 -11 301 261 209 0 chr11 139483240 139483355 -9300117 - MIR SINE MIR -75 187 49 1456 197 116 48 chr11 139483477 139483848 -9299624 + MSTD LTR MaLR 1 396 0 180 0 0 0 chr11 139484023 139484043 -9299429 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 183 241 138 17 chr11 139484113 139484171 -9299301 + MIR3 SINE MIR 114 178 -30 387 309 137 20 chr11 139484457 139484661 -9298811 + MIR SINE MIR 8 235 -27 2498 80 0 0 chr11 139486022 139486324 -9297148 + AluY SINE Alu 1 302 -9 201 260 0 19 chr11 139486426 139486493 -9296979 - L2 LINE L2 -289 2983 2921 238 243 187 75 chr11 139486801 139487015 -9296457 - MIR SINE MIR -2 260 23 215 232 0 71 chr11 139487032 139487088 -9296384 - L2 LINE L2 0 3313 3262 2322 98 7 7 chr11 139488059 139488364 -9295108 - AluSg SINE Alu 0 310 6 194 319 163 24 chr11 139488541 139488707 -9294765 - L2 LINE L2 -213 3059 2871 212 295 0 16 chr11 139489441 139489502 -9293970 + CT-rich Low_complexity Low_complexity 2 61 0 434 321 119 17 chr11 139490885 139491088 -9292384 - MIR SINE MIR -15 247 30 501 283 133 0 chr11 139491426 139491606 -9291866 + MIR SINE MIR 47 250 -12 186 237 0 0 chr11 139492266 139492304 -9291168 + L3 LINE CR1 1533 1570 -7 1471 262 75 39 chr11 139492457 139493015 -9290457 + MLT1G1 LTR MaLR 1 578 -17 184 302 106 38 chr11 139495765 139496000 -9287472 - L2 LINE L2 -214 3058 2808 414 314 41 0 chr11 139496344 139496465 -9287007 + L2 LINE L2 3147 3272 0 396 304 40 80 chr11 139496582 139496806 -9286666 + L3 LINE CR1 575 789 -788 430 319 65 68 chr11 139496986 139497356 -9286116 + L3 LINE CR1 796 1164 -413 788 263 105 4 chr11 139497376 139497604 -9285868 + MIR SINE MIR 8 258 -4 314 263 158 0 chr11 139497692 139497787 -9285685 - L3 LINE CR1 -226 1351 1242 * 658 289 88 17 chr11 139497753 139497992 -9285480 + L3 LINE CR1 1237 1492 -85 627 267 16 27 chr11 139498747 139498934 -9284538 + MIR3 SINE MIR 13 197 -11 362 304 213 14 chr11 139498982 139499189 -9284283 + MIR SINE MIR 1 248 -14 545 291 111 17 chr11 139500409 139500643 -9282829 + Charlie8 DNA MER1_type 1 256 -2161 452 253 12 117 chr11 139501489 139501593 -9281879 - MIR SINE MIR 0 262 149 926 216 9 28 chr11 139501593 139501806 -9281666 - MER3 DNA MER1_type 0 209 1 452 253 12 117 chr11 139501806 139501958 -9281514 - MIR SINE MIR -113 149 33 2573 163 6 27 chr11 139502200 139502685 -9280787 + L1MB3 LINE L1 5643 6117 -66 338 119 0 0 chr11 139502791 139502850 -9280622 + L1MB2 LINE L1 6112 6170 -1 245 295 21 10 chr11 139503408 139503504 -9279968 + MIR3 SINE MIR 62 159 -49 306 292 56 22 chr11 139504442 139504531 -9278941 - MIR3 SINE MIR -27 181 90 416 242 142 8 chr11 139504565 139504685 -9278787 - L2 LINE L2 -1 3271 3136 2069 136 3 3 chr11 139506414 139506708 -9276764 + AluSx SINE Alu 1 294 -18 1108 93 0 8 chr11 139507119 139507357 -9276115 + (CA)n Simple_repeat Simple_repeat 1 235 0 209 233 0 50 chr11 139507742 139507802 -9275670 + MIR SINE MIR 97 153 -55 1786 102 78 4 chr11 139508770 139509025 -9274447 - AluSg SINE Alu -11 299 26 215 274 161 27 chr11 139509357 139509543 -9273929 + L2 LINE L2 2365 2575 -739 1998 239 70 33 chr11 139509741 139510489 -9272983 - L1MC4a LINE L1 -747 5399 5184 2180 123 0 13 chr11 139510490 139510790 -9272682 - AluSq SINE Alu -15 298 3 755 292 55 8 chr11 139510942 139511199 -9272273 + MLT1L LTR MaLR 347 615 0 248 239 68 0 chr11 139511626 139511696 -9271776 + L2 LINE L2 3146 3259 -53 357 285 238 12 chr11 139512011 139512183 -9271289 + MIR SINE MIR 51 261 -1 203 298 107 78 chr11 139512345 139512550 -9270922 - MIR SINE MIR -4 258 48 303 176 0 0 chr11 139512844 139512935 -9270537 + (TG)n Simple_repeat Simple_repeat 2 92 0 200 97 32 0 chr11 139513187 139513218 -9270254 + GA-rich Low_complexity Low_complexity 2 33 0 225 0 0 0 chr11 139514161 139514186 -9269286 + (TTAG)n Simple_repeat Simple_repeat 3 27 0 2252 112 0 0 chr11 139514188 139514473 -9268999 - AluSx SINE Alu -26 286 2 203 200 0 73 chr11 139514485 139514540 -9268932 + MIR SINE MIR 52 102 -160 201 266 81 41 chr11 139514537 139514679 -9268793 - MIR SINE MIR -63 145 1 * 205 269 19 0 chr11 139515140 139515192 -9268280 + GA-rich Low_complexity Low_complexity 5 57 0 467 340 57 10 chr11 139515779 139515988 -9267484 + MIR SINE MIR 23 241 -21 1960 158 3 7 chr11 139516186 139516489 -9266983 + AluJb SINE Alu 1 302 -10 206 333 156 0 chr11 139516573 139516663 -9266809 - MIR SINE MIR -113 149 46 938 69 0 0 chr11 139517380 139517496 -9265976 + AluSg/x SINE Alu 192 307 -5 902 250 57 8 chr11 139518342 139518606 -9264866 + L2 LINE L2 3035 3311 -2 434 297 32 38 chr11 139518851 139519036 -9264436 - MIR SINE MIR -6 256 73 554 216 18 0 chr11 139519209 139519320 -9264152 - MER81 DNA DNA -1 113 1 202 216 0 0 chr11 139520518 139520555 -9262917 + (TG)n Simple_repeat Simple_repeat 2 38 0 362 341 31 22 chr11 139520877 139521106 -9262366 + L2 LINE L2 1746 1976 -1338 355 276 35 24 chr11 139521701 139521871 -9261601 + L2 LINE L2 2918 3089 -183 377 337 130 12 chr11 139522164 139522656 -9260816 + L2 LINE L2 1796 2345 -969 222 222 0 0 chr11 139522693 139522747 -9260725 + GA-rich Low_complexity Low_complexity 4 57 0 347 313 68 60 chr11 139522768 139523136 -9260336 + L2 LINE L2 2376 2746 -568 681 278 11 0 chr11 139523154 139523341 -9260131 - MIR SINE MIR -14 248 60 471 316 86 53 chr11 139523448 139523865 -9259607 + L2 LINE L2 2832 3262 -10 208 370 65 0 chr11 139524836 139524928 -9258544 - L2 LINE L2 -7 3306 3209 355 200 63 0 chr11 139525503 139525598 -9257874 + MER5A DNA MER1_type 9 109 -80 1279 146 77 29 chr11 139526533 139526779 -9256693 + AluJo SINE Alu 1 258 -54 206 286 39 0 chr11 139529134 139529211 -9254261 - L2 LINE L2 -57 3215 3136 398 321 42 45 chr11 139529295 139529628 -9253844 - L2 LINE L2 -623 2691 2360 2102 121 3 10 chr11 139530054 139530375 -9253097 - AluSq SINE Alu 0 319 1 261 291 0 25 chr11 139530773 139530796 -9252676 + GA-rich Low_complexity Low_complexity 3 25 -54 2079 157 0 0 chr11 139530796 139531109 -9252363 + AluSq SINE Alu 1 313 0 261 291 0 25 chr11 139531109 139531164 -9252308 + GA-rich Low_complexity Low_complexity 25 79 0 180 0 0 0 chr11 139532260 139532280 -9251192 + (TTG)n Simple_repeat Simple_repeat 2 21 0 397 165 13 0 chr11 139532871 139532950 -9250522 + MER3 DNA MER1_type 98 130 -79 504 321 26 16 chr11 139533167 139533360 -9250112 - MIR3 SINE MIR -6 202 8 435 38 0 0 chr11 139534012 139534065 -9249407 + (TG)n Simple_repeat Simple_repeat 2 54 0 224 246 16 16 chr11 139534657 139534718 -9248754 + MIR SINE MIR 20 80 -182 666 318 37 16 chr11 139534819 139535064 -9248408 + MIR SINE MIR 13 262 0 274 309 0 12 chr11 139535070 139535154 -9248318 + MIR SINE MIR 168 250 -12 336 297 34 25 chr11 139535969 139536087 -9247385 - MIR SINE MIR -55 207 89 217 282 254 0 chr11 139537240 139537350 -9246122 + MIR SINE MIR 125 262 0 314 301 26 72 chr11 139538642 139538835 -9244637 + MIR3 SINE MIR 9 192 -16 256 354 124 18 chr11 139539386 139539612 -9243860 - L2 LINE L2 -508 2806 2557 539 228 0 39 chr11 139539669 139539720 -9243752 + MER94 DNA DNA 8 59 -75 2281 119 0 0 chr11 139539720 139540022 -9243450 + AluSc SINE Alu 1 302 -7 539 228 0 39 chr11 139540022 139540097 -9243375 + MER94 DNA DNA 59 129 -5 431 309 12 9 chr11 139540429 139540599 -9242873 - L1MCa LINE L1 -1339 6983 1995 434 219 177 43 chr11 139541764 139541928 -9241544 + MIR SINE MIR 71 256 -6 5303 176 38 31 chr11 139542132 139543253 -9240219 + L1MB4 LINE L1 4021 5165 -1015 1913 176 3 3 chr11 139543253 139543560 -9239912 - AluJo SINE Alu -5 307 1 5303 176 38 31 chr11 139543560 139544582 -9238890 + L1MB4 LINE L1 5165 6178 -2 217 277 0 0 chr11 139544867 139544914 -9238558 - L2 LINE L2 -8 3305 3259 197 224 121 0 chr11 139545505 139545563 -9237909 + MIR SINE MIR 32 96 -166 2515 15 0 0 chr11 139546451 139546717 -9236755 + AluYb8 SINE Alu 37 302 -16 244 346 40 20 chr11 139546830 139546931 -9236541 + MIR3 SINE MIR 74 176 -32 416 336 55 14 chr11 139547310 139547527 -9235945 - MIR SINE MIR -30 232 7 246 333 36 27 chr11 139547655 139547766 -9235706 + MER81 DNA DNA 2 113 -1 915 291 29 0 chr11 139548631 139548875 -9234597 + MIR SINE MIR 12 262 0 450 232 90 58 chr11 139549295 139549450 -9234022 + MIR3 SINE MIR 44 203 -5 204 40 0 0 chr11 139549518 139549543 -9233929 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 674 257 125 46 chr11 139549625 139549969 -9233503 - L2 LINE L2 -177 3136 2767 452 318 68 48 chr11 139550334 139550774 -9232698 + L2 LINE L2 2865 3313 0 294 356 112 5 chr11 139550933 139551121 -9232351 - MIR SINE MIR -35 227 20 449 117 26 0 chr11 139551162 139551239 -9232233 + CT-rich Low_complexity Low_complexity 4 82 0 1055 122 6 0 chr11 139551240 139551412 -9232060 + (TTCC)n Simple_repeat Simple_repeat 3 175 0 2251 92 7 0 chr11 139551412 139551695 -9231777 - AluSp SINE Alu -21 292 8 484 237 23 92 chr11 139551698 139551871 -9231601 + MIR3 SINE MIR 48 208 0 180 111 0 0 chr11 139551961 139551988 -9231484 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 471 252 15 23 chr11 139552361 139552492 -9230980 - MIR SINE MIR -102 160 31 540 289 25 79 chr11 139553309 139553624 -9229848 + L2 LINE L2 2972 3269 -3 236 209 55 99 chr11 139554086 139554177 -9229295 - MIR SINE MIR -59 203 117 266 149 30 42 chr11 139554241 139554319 -9229153 + MIR SINE MIR 53 130 -78 516 32 0 0 chr11 139554662 139554724 -9228748 + (TTCC)n Simple_repeat Simple_repeat 2 63 0 273 344 16 8 chr11 139555408 139555536 -9227936 - MIR3 SINE MIR -4 204 76 217 232 22 59 chr11 139556566 139556672 -9226800 + MIR SINE MIR 91 192 -64 563 279 95 34 chr11 139556705 139556945 -9226527 - MIR SINE MIR -7 255 3 585 305 21 5 chr11 139557239 139557426 -9226046 - MIR3 SINE MIR 0 208 19 455 344 97 0 chr11 139558313 139558499 -9224973 - MIR SINE MIR -6 256 53 482 204 7 73 chr11 139558542 139558679 -9224793 + L2 LINE L2 3185 3312 -1 214 311 77 18 chr11 139560304 139560428 -9223044 - MIR SINE MIR -65 143 12 22 80 0 0 chr11 139563325 139563375 -9220097 + GC_rich Low_complexity Low_complexity 1 50 0 209 33 33 0 chr11 139564755 139564785 -9218687 + (CGG)n Simple_repeat Simple_repeat 3 33 0 233 114 43 14 chr11 139564934 139565004 -9218468 + CT-rich Low_complexity Low_complexity 2 73 0 194 0 39 0 chr11 139565089 139565115 -9218357 + (CCG)n Simple_repeat Simple_repeat 2 28 0 267 302 0 0 chr11 139565242 139565328 -9218144 + C-rich Low_complexity Low_complexity 1 86 0 25 51 0 0 chr11 139566798 139566837 -9216635 + AT_rich Low_complexity Low_complexity 1 39 0 190 301 21 84 chr11 139567376 139567519 -9215953 - L2 LINE L2 -1 3312 3179 1469 177 73 57 chr11 139568019 139568403 -9215069 - MLT1B LTR MaLR 0 390 1 270 364 25 16 chr11 139568458 139568579 -9214893 + L2 LINE L2 3151 3272 0 265 338 64 19 chr11 139568614 139568771 -9214701 + L2 LINE L2 2595 2758 -556 207 287 109 20 chr11 139568988 139569089 -9214383 + MER5A DNA MER1_type 47 156 -33 496 265 23 8 chr11 139569397 139569529 -9213943 + MIR SINE MIR 117 250 -12 342 0 0 0 chr11 139570258 139570296 -9213176 + (CA)n Simple_repeat Simple_repeat 1 38 0 1358 174 42 26 chr11 139570611 139570922 -9212550 + MER33 DNA MER1_type 1 316 -8 328 315 9 19 chr11 139571728 139571836 -9211636 - MIR SINE MIR 0 262 156 198 143 0 0 chr11 139571954 139571989 -9211483 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 264 59 0 0 chr11 139572865 139572899 -9210573 + (TG)n Simple_repeat Simple_repeat 1 34 0 294 328 0 0 chr11 139573840 139574017 -9209455 + (CA)n Simple_repeat Simple_repeat 2 178 0 300 328 0 0 chr11 139574096 139574276 -9209196 + (CA)n Simple_repeat Simple_repeat 1 180 0 337 304 2 4 chr11 139574364 139574773 -9208699 + (CA)n Simple_repeat Simple_repeat 1 408 0 244 335 0 0 chr11 139574693 139574872 -9208600 + (CAGA)n Simple_repeat Simple_repeat 1 179 0 * 453 250 23 23 chr11 139575885 139576017 -9207455 - L2 LINE L2 -1 3271 3140 212 346 29 0 chr11 139576052 139576156 -9207316 + L2 LINE L2 3113 3219 -94 535 290 136 9 chr11 139576164 139576385 -9207087 - MIR SINE MIR -6 256 8 288 98 0 0 chr11 139576583 139576624 -9206848 + 5S rRNA rRNA 1 41 -80 1514 185 63 30 chr11 139576782 139577084 -9206388 + AluJo SINE Alu 1 312 0 283 313 9 45 chr11 139577147 139577259 -9206213 + L2 LINE L2 3163 3270 -43 849 259 55 63 chr11 139578313 139578839 -9204633 + HAL1 LINE L1 678 1199 -1308 1114 305 44 32 chr11 139578850 139578983 -9204489 + HAL1 LINE L1 1354 1484 -1023 2595 47 3 3 chr11 139578983 139579280 -9204192 + AluY SINE Alu 1 297 -14 1114 305 44 32 chr11 139579280 139579713 -9203759 + HAL1 LINE L1 1484 1927 -580 772 284 106 24 chr11 139579735 139580161 -9203311 + HAL1 LINE L1 2047 2507 0 602 276 75 49 chr11 139580693 139581001 -9202471 - MLT1I LTR MaLR -8 401 86 237 346 0 0 chr11 139581352 139581430 -9202042 + MIR3 SINE MIR 129 206 -2 188 86 29 0 chr11 139681566 139681601 -9101871 + (TA)n Simple_repeat Simple_repeat 2 37 0 26 0 0 0 chr11 139681615 139681641 -9101831 + AT_rich Low_complexity Low_complexity 1 26 0 486 328 136 34 chr11 139681674 139682228 -9101244 + L1MC4a LINE L1 4626 5250 -896 273 258 122 39 chr11 139682267 139682496 -9100976 + L1MC4a LINE L1 5356 5603 -518 2075 126 18 0 chr11 139682499 139682785 -9100687 + AluSx SINE Alu 1 291 -21 441 180 31 137 chr11 139682812 139682973 -9100499 + MIR SINE MIR 72 215 -47 255 372 0 12 chr11 139682973 139683059 -9100413 + L2 LINE L2 3229 3313 0 573 289 54 36 chr11 139683101 139683390 -9100082 + L1MC4a LINE L1 5614 5896 -1912 753 181 0 9 chr11 139683390 139683506 -9099966 - FLAM_A SINE Alu -18 115 1 573 289 54 36 chr11 139683506 139683536 -9099936 + L1MC4a LINE L1 5896 5924 -1884 1823 177 0 16 chr11 139683536 139683847 -9099625 + AluJb SINE Alu 5 310 -2 573 289 54 36 chr11 139683847 139683913 -9099559 + L1MC4a LINE L1 5924 6007 -1801 1604 201 72 21 chr11 139684144 139684578 -9098894 + MLT1C LTR MaLR 6 382 -8 333 0 0 0 chr11 139685139 139685176 -9098296 + (CA)n Simple_repeat Simple_repeat 2 38 0 183 42 0 0 chr11 139685521 139685545 -9097927 + (CA)n Simple_repeat Simple_repeat 2 25 0 273 98 0 0 chr11 139685771 139685812 -9097660 + (CA)n Simple_repeat Simple_repeat 1 41 0 261 246 62 0 chr11 139687184 139687249 -9096223 - MIR3 SINE MIR -43 165 97 214 128 51 0 chr11 139687583 139687622 -9095850 + C-rich Low_complexity Low_complexity 1 41 0 524 256 144 22 chr11 139691236 139691416 -9092056 - MIR SINE MIR -48 214 13 203 86 0 29 chr11 139692345 139692380 -9091092 + (GAAAA)n Simple_repeat Simple_repeat 4 37 0 343 329 81 17 chr11 139692438 139692672 -9090800 - MIR SINE MIR -2 260 12 519 301 87 16 chr11 139692714 139692897 -9090575 + MIR SINE MIR 66 261 -1 413 145 53 0 chr11 139692916 139692992 -9090480 - MER116 DNA Mariner 0 80 1 221 241 0 37 chr11 139694264 139694318 -9089154 + MIR SINE MIR 93 144 -64 416 245 265 20 chr11 139694375 139694522 -9088950 - MIR SINE MIR -24 238 56 364 243 97 7 chr11 139695646 139695790 -9087682 + L1ME4a LINE L1 5961 6117 -4 403 294 113 6 chr11 139695800 139695960 -9087512 + MIR SINE MIR 13 189 -73 180 0 0 0 chr11 139697065 139697085 -9086387 + (A)n Simple_repeat Simple_repeat 1 20 0 3037 180 62 17 chr11 139697085 139697742 -9085730 - LTR8A LTR ERV1 -40 687 1 2178 193 67 19 chr11 139697742 139698186 -9085286 - L1M4b LINE L1 -6363 496 28 1983 148 24 12 chr11 139698186 139698525 -9084947 + MER61A LTR ERV1 1 343 0 2178 193 67 19 chr11 139698525 139698546 -9084926 - L1M4b LINE L1 -6831 28 9 1002 231 38 83 chr11 139698553 139698925 -9084547 + L2 LINE L2 1759 2113 -1201 2368 141 51 92 chr11 139698948 139699575 -9083897 - MER4B LTR ERV1 -5 774 1 477 211 8 49 chr11 139699594 139699717 -9083755 + LTR38B LTR ERV1 1 118 -492 3263 151 98 48 chr11 139699876 139700560 -9082912 + MER50 LTR ERV1 1 718 -16 1791 229 95 38 chr11 139700561 139701085 -9082387 - MLT2B3 LTR ERVL 0 554 1 10167 91 8 5 chr11 139701085 139702489 -9080983 - HERVL-B3 LTR ERVL 0 5654 4246 1418 244 201 11 chr11 139702489 139702868 -9080604 + L2 LINE L2 2194 2500 -813 2087 131 3 13 chr11 139702868 139703173 -9080299 - AluSx SINE Alu -10 302 1 1418 244 201 11 chr11 139703173 139703482 -9079990 + L2 LINE L2 2500 3037 -276 2558 90 0 0 chr11 139703625 139703937 -9079535 + AluSx SINE Alu 1 312 0 983 150 20 0 chr11 139704093 139704246 -9079226 + AluJo SINE Alu 120 275 -37 1033 305 54 14 chr11 139704490 139704932 -9078540 + HERVL LTR ERVL 2806 3265 -2389 863 255 133 11 chr11 139704938 139705216 -9078256 + LTR16C LTR ERVL 171 482 -9 646 133 26 26 chr11 139705353 139705504 -9077968 + CT-rich Low_complexity Low_complexity 2 152 0 1418 227 10 14 chr11 139705547 139705842 -9077630 - AluJo SINE Alu -18 294 1 3608 167 109 7 chr11 139705934 139706612 -9076860 - MER21B LTR ERV1 -116 747 1 1620 177 72 0 chr11 139706766 139707043 -9076429 - AluJb SINE Alu -14 298 2 651 229 15 0 chr11 139707045 139707176 -9076296 - AluJo SINE Alu -178 134 2 340 335 12 56 chr11 139707182 139707343 -9076129 - MIR SINE MIR -101 161 8 2369 87 3 0 chr11 139708536 139708834 -9074638 - AluSc SINE Alu -10 299 1 1838 147 3 58 chr11 139709173 139709485 -9073987 - AluSx SINE Alu -17 295 1 2601 40 0 7 chr11 139710016 139710320 -9073152 - AluY SINE Alu -5 306 5 288 0 0 0 chr11 139711015 139711047 -9072425 + (CA)n Simple_repeat Simple_repeat 2 33 0 547 238 133 0 chr11 139711235 139711386 -9072086 + MER5A DNA MER1_type 1 171 -18 1144 84 177 44 chr11 139711400 139711603 -9071869 + MER30 DNA MER1_type 1 230 0 2844 189 108 26 chr11 139713484 139714391 -9069081 - L1MC5 LINE L1 -58 7903 6923 320 290 61 8 chr11 139714416 139714547 -9068925 + Charlie8 DNA MER1_type 90 227 -2190 216 250 432 0 chr11 139714630 139714718 -9068754 - MIR3 SINE MIR -48 160 35 434 293 66 55 chr11 139714910 139715166 -9068306 + L2 LINE L2 2621 2879 -435 237 253 24 96 chr11 139715424 139715590 -9067882 + L2 LINE L2 3159 3312 -1 315 177 0 0 chr11 139715822 139715884 -9067588 + (TG)n Simple_repeat Simple_repeat 1 62 0 194 0 39 0 chr11 139715999 139716025 -9067447 + (CA)n Simple_repeat Simple_repeat 2 28 0 359 236 27 73 chr11 139716490 139716600 -9066872 + MIR SINE MIR 40 144 -118 612 250 8 107 chr11 139716628 139716872 -9066600 - MIR SINE MIR -22 240 21 2110 131 0 3 chr11 139716951 139717249 -9066223 - AluSx SINE Alu -15 297 1 475 193 0 0 chr11 139717328 139717411 -9066061 + FLAM_A SINE Alu 2 84 -58 239 273 73 27 chr11 139717771 139717881 -9065591 + MIR SINE MIR 66 180 -82 2083 137 0 22 chr11 139719824 139720137 -9063335 - AluSx SINE Alu -6 306 1 262 303 13 0 chr11 139720264 139720340 -9063132 + L3 LINE CR1 1426 1502 -75 232 195 0 0 chr11 139720778 139720819 -9062653 - L2 LINE L2 -15 3257 3217 330 282 10 10 chr11 139721895 139721998 -9061474 + GA-rich Low_complexity Low_complexity 2 104 0 4291 149 39 24 chr11 139722064 139722181 -9061291 + L1MA4 LINE L1 4588 4702 -1598 1471 187 0 26 chr11 139722181 139722454 -9061018 + AluJo SINE Alu 1 266 -46 4291 149 39 24 chr11 139722454 139723380 -9060092 + L1MA4 LINE L1 4702 5655 -645 192 77 0 0 chr11 139723380 139723406 -9060066 + (TG)n Simple_repeat Simple_repeat 2 27 0 4291 149 39 24 chr11 139723406 139723780 -9059692 + L1MA4 LINE L1 5655 6022 -278 460 126 81 0 chr11 139723794 139723881 -9059591 + L1MB2 LINE L1 6078 6171 0 23 0 0 0 chr11 139723921 139723944 -9059528 + AT_rich Low_complexity Low_complexity 1 23 0 184 184 53 0 chr11 139724035 139724073 -9059399 + L3 LINE CR1 900 939 -638 431 248 9 9 chr11 139724233 139724342 -9059130 + MIR SINE MIR 40 148 -114 1990 118 80 0 chr11 139724360 139724648 -9058824 - AluSx SINE Alu -1 311 1 1403 124 24 23 chr11 139724703 139725153 -9058319 + LTR54 LTR ERV1 1 510 0 333 336 54 57 chr11 139725239 139725572 -9057900 - L2 LINE L2 -16 3256 2925 2030 148 0 0 chr11 139725639 139725936 -9057536 + AluSx SINE Alu 1 297 -15 195 283 0 17 chr11 139726119 139726179 -9057293 + L2 LINE L2 3210 3268 -4 21 0 0 0 chr11 139726414 139726435 -9057037 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr11 139726464 139726493 -9056979 + AT_rich Low_complexity Low_complexity 1 29 0 5768 272 115 31 chr11 139726507 139727388 -9056084 + L2 LINE L2 408 1213 -2100 1751 173 14 3 chr11 139727388 139727672 -9055800 - AluJo SINE Alu -25 287 1 5768 272 115 31 chr11 139727672 139728307 -9055165 + L2 LINE L2 1213 1793 -1520 1832 189 22 8 chr11 139728307 139728667 -9054805 - MLT1A1 LTR MaLR 0 365 1 5768 272 115 31 chr11 139728667 139729813 -9053659 + L2 LINE L2 1793 3295 -18 324 0 0 0 chr11 139729815 139729851 -9053621 + (T)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr11 139730014 139730035 -9053437 + AT_rich Low_complexity Low_complexity 1 21 0 2492 79 0 3 chr11 139730050 139730354 -9053118 - AluSc SINE Alu -6 303 1 225 208 83 0 chr11 139730354 139730402 -9053070 + LTR8A LTR ERV1 676 727 0 3149 199 26 3 chr11 139730404 139730983 -9052489 + L1MB8 LINE L1 495 1086 -5773 3384 211 24 24 chr11 139730990 139731822 -9051650 + L1MB8 LINE L1 4534 5365 -1592 891 191 60 143 chr11 139731823 139732137 -9051335 - MLT1A1 LTR MaLR 0 365 78 686 144 0 110 chr11 139732152 139732226 -9051246 - MER83B LTR ERV1 -13 365 313 2445 88 0 0 chr11 139732226 139732522 -9050950 + AluSg SINE Alu 1 296 -14 686 144 0 110 chr11 139732522 139732593 -9050879 - MER83B LTR ERV1 -65 313 236 509 133 36 12 chr11 139732593 139732676 -9050796 - MER83C-int LTR ERV1 -269 4611 4527 4020 240 55 30 chr11 139732863 139734056 -9049416 - MER83C-int LTR ERV1 -3872 1008 41 2140 137 55 38 chr11 139734066 139734432 -9049040 - MER83C LTR ERV1 0 373 2 1969 123 3 14 chr11 139734442 139734629 -9048843 - AluSx SINE Alu 0 320 136 2347 80 0 7 chr11 139734629 139734946 -9048526 - AluSc SINE Alu 0 309 1 1969 123 3 14 chr11 139734946 139735081 -9048391 - AluSx SINE Alu -184 136 1 2280 113 0 19 chr11 139735096 139735414 -9048058 - AluSq SINE Alu -1 312 1 358 234 13 0 chr11 139735418 139735495 -9047977 - MLT1A1 LTR MaLR -287 78 1 2579 187 43 56 chr11 139735495 139736153 -9047319 + L1MB8 LINE L1 5362 6010 -947 1642 164 36 11 chr11 139736156 139736437 -9047035 + AluJo SINE Alu 1 288 -24 2348 192 18 8 chr11 139736442 139736932 -9046540 + L1MB8 LINE L1 6495 6989 0 2339 88 0 3 chr11 139736952 139737247 -9046225 - AluSx SINE Alu -18 294 1 1721 277 93 18 chr11 139737263 139737917 -9045555 - L2 LINE L2 -1547 1767 1065 727 316 118 14 chr11 139737921 139738276 -9045196 - L2 LINE L2 -2897 417 26 203 304 78 0 chr11 139738322 139738424 -9045048 - MIR SINE MIR -14 248 139 4356 147 107 82 chr11 139738701 139739833 -9043639 - L1MC2 LINE L1 -2 6342 5186 2287 79 0 14 chr11 139739846 139740138 -9043334 + AluSg SINE Alu 1 288 -22 360 0 0 0 chr11 139740145 139740185 -9043287 + (TTA)n Simple_repeat Simple_repeat 2 41 0 762 318 29 6 chr11 139740297 139740608 -9042864 - L1ME4a LINE L1 -296 5825 5508 1653 152 76 4 chr11 139740642 139740918 -9042554 - AluSx SINE Alu -16 296 1 2225 119 3 3 chr11 139741151 139741453 -9042019 - AluSx SINE Alu -10 302 1 3078 212 50 55 chr11 139741641 139742736 -9040736 - L1ME1 LINE L1 -5 6161 5080 1225 191 33 29 chr11 139743318 139743590 -9039882 - L1ME1 LINE L1 -1053 5093 4821 8473 97 51 27 chr11 139743604 139744099 -9039373 - Charlie3 DNA MER1_type -1444 1262 781 1964 135 0 32 chr11 139744099 139744410 -9039062 - AluSx SINE Alu -11 301 1 8473 97 51 27 chr11 139744410 139745146 -9038326 - Charlie3 DNA MER1_type -1925 781 1 2022 268 22 2 chr11 139745146 139745680 -9037792 - L1MEc LINE L1 -5805 591 47 494 315 169 11 chr11 139745691 139746040 -9037432 - L2 LINE L2 -40 3273 2870 1009 268 88 54 chr11 139746108 139746645 -9036827 - MLT1H1 LTR MaLR 0 555 1 1161 150 24 58 chr11 139746697 139746904 -9036568 - AluJb SINE Alu -13 299 100 1185 160 5 0 chr11 139747020 139747207 -9036265 + AluJb SINE Alu 120 307 -5 958 252 65 67 chr11 139747211 139747691 -9035781 + L1M4 LINE L1 4372 4850 -1296 862 107 0 0 chr11 139747695 139747817 -9035655 - AluSp/q SINE Alu -7 306 185 2884 176 0 0 chr11 139747817 139748277 -9035195 + MER52A LTR ERV1 1296 1755 0 2039 114 11 4 chr11 139748366 139748646 -9034826 + AluJb SINE Alu 1 282 -30 333 0 0 0 chr11 139748647 139748684 -9034788 + (CA)n Simple_repeat Simple_repeat 1 37 0 741 217 179 19 chr11 139748840 139749047 -9034425 - MIR SINE MIR -21 241 2 1192 102 36 41 chr11 139749276 139749472 -9034000 + L1PB1 LINE L1 5957 6151 0 2257 76 7 3 chr11 139750748 139751036 -9032436 - AluSp SINE Alu -24 289 1 31 0 0 0 chr11 139752261 139752292 -9031180 + AT_rich Low_complexity Low_complexity 1 31 0 999 147 88 34 chr11 139752325 139752529 -9030943 - AluJo SINE Alu -97 215 1 212 222 99 25 chr11 139753026 139753107 -9030365 + L2 LINE L2 3173 3259 -54 1835 158 0 49 chr11 139753118 139753446 -9030026 - AluJo SINE Alu 0 312 1 1088 155 0 17 chr11 139754038 139754212 -9029260 + FAM SINE Alu 1 171 -4 188 276 52 0 chr11 139754867 139754925 -9028547 - L2 LINE L2 -5 3308 3248 213 39 0 0 chr11 139754947 139754973 -9028499 + (TAAAAA)n Simple_repeat Simple_repeat 1 26 0 1837 167 3 3 chr11 139755470 139755782 -9027690 + AluJb SINE Alu 1 312 0 873 185 24 34 chr11 139756484 139756689 -9026783 + MER3 DNA MER1_type 2 204 -5 1039 192 56 0 chr11 139756944 139757142 -9026330 + MER3 DNA MER1_type 1 209 0 406 188 50 0 chr11 139757155 139757256 -9026216 - Charlie2a DNA MER1_type -4 2858 2753 514 247 238 0 chr11 139757271 139757494 -9025978 - Charlie2a DNA MER1_type -1860 1002 727 334 190 51 13 chr11 139757520 139757599 -9025873 - Charlie2a DNA MER1_type -2458 404 323 410 171 19 57 chr11 139758533 139758638 -9024834 + MER112 DNA MER1_type 17 117 -143 302 214 95 0 chr11 139758638 139758722 -9024750 - MIR SINE MIR -5 257 166 328 221 15 15 chr11 139759591 139759659 -9023813 + MER112 DNA MER1_type 175 242 -18 370 359 185 4 chr11 139759836 139760106 -9023366 - L2 LINE L2 -439 2875 2557 543 233 16 8 chr11 139761558 139761687 -9021785 - L2 LINE L2 0 3313 3184 21 0 0 0 chr11 139761694 139761715 -9021757 + AT_rich Low_complexity Low_complexity 1 21 0 207 340 10 19 chr11 139761924 139762027 -9021445 - L2 LINE L2 -2 3270 3169 1560 142 95 11 chr11 139762551 139762825 -9020647 - AluJb SINE Alu -14 298 2 1570 113 0 18 chr11 139763046 139763267 -9020205 + AluSg/x SINE Alu 77 293 -17 542 231 176 23 chr11 139763518 139763739 -9019733 - MIR SINE MIR 0 262 8 960 144 27 0 chr11 139764382 139764528 -9018944 + FAM SINE Alu 5 154 -31 218 221 15 88 chr11 139764760 139764828 -9018644 + MIR SINE MIR 85 147 -115 207 158 26 13 chr11 139764833 139764909 -9018563 + (TA)n Simple_repeat Simple_repeat 2 78 0 965 297 65 20 chr11 139764913 139765310 -9018162 + LTR16A LTR ERVL 21 435 -15 183 328 0 0 chr11 139765346 139765410 -9018062 + MIR SINE MIR 199 262 0 2003 139 3 0 chr11 139767004 139767313 -9016159 - AluSx SINE Alu -2 310 1 435 242 40 32 chr11 139767882 139768006 -9015466 - L2 LINE L2 -2 3311 3187 359 250 12 0 chr11 139768088 139768172 -9015300 + MIR3 SINE MIR 111 195 -13 1587 153 7 23 chr11 139768176 139768477 -9014995 - AluJo SINE Alu -7 305 10 219 313 37 49 chr11 139768615 139768699 -9014773 - L2 LINE L2 -1329 1985 1902 2382 77 0 0 chr11 139768699 139768999 -9014473 + AluSx SINE Alu 1 300 -12 219 313 37 49 chr11 139768999 139769077 -9014395 - L2 LINE L2 -1412 1902 1825 2278 93 0 0 chr11 139769449 139769751 -9013721 - AluSq SINE Alu -11 302 1 454 322 55 58 chr11 139771435 139771832 -9011640 - L3 LINE CR1 -396 1181 786 2168 77 7 0 chr11 139774053 139774340 -9009132 + AluSp SINE Alu 1 289 -24 240 35 0 0 chr11 139777876 139777905 -9005567 + (T)n Simple_repeat Simple_repeat 1 29 0 25 0 0 0 chr11 139778005 139778030 -9005442 + GC_rich Low_complexity Low_complexity 1 25 0 279 54 0 0 chr11 139778056 139778093 -9005379 + (A)n Simple_repeat Simple_repeat 1 37 0 2393 54 0 7 chr11 139778525 139778870 -9004602 - AluY SINE Alu 0 311 1 970 168 11 27 chr11 139778873 139779058 -9004414 - AluSg/x SINE Alu -5 305 124 558 238 109 25 chr11 139779326 139779570 -9003902 + MER77 LTR ERV1 295 599 -6 1086 251 19 42 chr11 139779797 139780175 -9003297 + L1MC/D LINE L1 5290 5658 -2150 767 198 54 12 chr11 139780228 139780395 -9003077 + MLT1H LTR MaLR 71 244 -305 413 274 39 0 chr11 139780684 139780786 -9002686 + MLT1-int LTR MaLR 440 545 -826 785 173 0 0 chr11 139780895 139781028 -9002444 + FLAM_C SINE Alu 1 133 0 22 0 0 0 chr11 139781038 139781060 -9002412 + GC_rich Low_complexity Low_complexity 1 22 0 405 291 45 45 chr11 139781786 139781965 -9001507 - MER5A DNA MER1_type -4 185 7 268 322 74 0 chr11 139782880 139783001 -9000471 - MIR SINE MIR -71 191 62 270 0 0 0 chr11 139783917 139783947 -8999525 + (A)n Simple_repeat Simple_repeat 1 30 0 207 0 0 0 chr11 139784150 139784173 -8999299 + (A)n Simple_repeat Simple_repeat 1 23 0 801 268 144 40 chr11 139784175 139784571 -8998901 - L3 LINE CR1 -26 1551 1115 412 235 76 22 chr11 139789330 139789509 -8993963 + MIR SINE MIR 3 197 -62 1229 47 0 0 chr11 139789529 139789678 -8993794 + L1PA3 LINE L1 6004 6152 -3 207 0 0 0 chr11 139789681 139789704 -8993768 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 350 275 9 37 chr11 139789710 139789819 -8993653 - MIR SINE MIR -10 252 147 366 296 189 13 chr11 139789831 139790125 -8993347 - L1MC5 LINE L1 -30 8012 7689 345 226 217 9 chr11 139790171 139790286 -8993186 - MIR SINE MIR -115 147 9 301 233 27 0 chr11 139791328 139791401 -8992071 - MER69 DNA AcHobo -2 2524 2450 1615 164 18 7 chr11 139791426 139791712 -8991760 + AluJb SINE Alu 1 289 -23 552 165 21 0 chr11 139792088 139792185 -8991287 - AluS SINE Alu -213 100 2 234 0 0 0 chr11 139796448 139796474 -8986998 + (A)n Simple_repeat Simple_repeat 1 26 0 1641 142 0 62 chr11 139798846 139799170 -8984302 + AluJo SINE Alu 1 304 -8 24 0 0 0 chr11 139799561 139799585 -8983887 + AT_rich Low_complexity Low_complexity 1 24 0 824 143 189 0 chr11 139801121 139801296 -8982176 + MER3 DNA MER1_type 1 208 -1 375 220 143 11 chr11 139802649 139802740 -8980732 + L2 LINE L2 3209 3311 -2 1531 187 44 3 chr11 139803349 139803643 -8979829 - AluJo SINE Alu 0 312 7 1118 132 0 11 chr11 139803664 139803838 -8979634 - AluSg/x SINE Alu -20 292 121 323 185 6 108 chr11 139803891 139804048 -8979424 - AluSg SINE Alu -103 197 57 1041 155 0 36 chr11 139804048 139804242 -8979230 - AluSx SINE Alu -121 191 5 1521 153 96 0 chr11 139804560 139804841 -8978631 + AluSx SINE Alu 1 308 -4 2336 70 0 19 chr11 139805528 139805842 -8977630 + AluY SINE Alu 1 308 -3 216 203 0 17 chr11 139808030 139808089 -8975383 + (CA)n Simple_repeat Simple_repeat 2 59 0 2005 136 19 7 chr11 139809517 139809825 -8973647 - AluSx SINE Alu 0 312 1 417 240 41 68 chr11 139809842 139809988 -8973484 - MIR3 SINE MIR -54 154 13 3632 98 20 104 chr11 139810209 139810872 -8972600 - MER4B LTR ERV1 -2 608 2 375 216 206 10 chr11 139811912 139812106 -8971366 - L1MC5 LINE L1 -36 7925 7694 1380 170 4 26 chr11 139812157 139812427 -8971045 + L1MA9 LINE L1 6049 6312 0 1888 145 16 10 chr11 139812438 139812748 -8970724 + AluJb SINE Alu 1 312 0 323 263 88 0 chr11 139812767 139812847 -8970625 + L2 LINE L2 3227 3313 0 1820 136 30 3 chr11 139814509 139814804 -8968668 - AluSx SINE Alu -9 303 1 295 244 0 49 chr11 139814956 139815038 -8968434 + MLT1L LTR MaLR 3 80 -535 234 346 103 22 chr11 139815080 139815265 -8968207 + MLT1L LTR MaLR 192 391 -224 204 22 156 0 chr11 139815353 139815398 -8968074 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 1858 125 3 55 chr11 139815440 139815752 -8967720 + AluSx SINE Alu 1 296 -16 1849 158 7 0 chr11 139816847 139817150 -8966322 + AluJo SINE Alu 1 305 -7 201 193 0 70 chr11 139817227 139817284 -8966188 - MIR SINE MIR -10 252 200 358 338 50 51 chr11 139817286 139817778 -8965694 - MLT1K LTR MaLR 0 588 57 439 262 19 124 chr11 139817814 139818024 -8965448 - MIR SINE MIR -61 201 14 326 237 29 93 chr11 139818237 139818376 -8965096 - MLT1K LTR MaLR -105 483 354 2051 94 7 7 chr11 139818803 139819080 -8964392 - AluSx SINE Alu -35 277 1 436 141 0 0 chr11 139819099 139819163 -8964309 + L2 LINE L2 3248 3311 -2 660 275 58 24 chr11 139819585 139819876 -8963596 + L3b LINE CR1 1105 1405 -178 393 242 133 121 chr11 139821064 139821394 -8962078 - MLT1J LTR MaLR -177 334 1 220 254 0 63 chr11 139821900 139821963 -8961509 + L2 LINE L2 2907 2965 -307 192 286 94 98 chr11 139822252 139822331 -8961141 - L2 LINE L2 -13 3259 3181 1858 164 3 7 chr11 139822331 139822623 -8960849 + AluJo SINE Alu 1 291 -21 192 286 94 98 chr11 139822623 139822861 -8960611 - L2 LINE L2 -91 3181 2943 393 254 43 29 chr11 139823767 139823905 -8959567 - MIR3 SINE MIR -21 187 48 234 236 112 34 chr11 139824267 139824356 -8959116 - MIR SINE MIR -78 130 35 383 316 103 0 chr11 139824774 139824910 -8958562 + MIR SINE MIR 20 169 -93 221 204 45 0 chr11 139824924 139824968 -8958504 + L2 LINE L2 3256 3301 -12 222 244 205 39 chr11 139825150 139825228 -8958244 + L2 LINE L2 3175 3265 -7 236 100 25 0 chr11 139825707 139825747 -8957725 + (TC)n Simple_repeat Simple_repeat 2 42 0 261 83 0 0 chr11 139825747 139825783 -8957689 + (CA)n Simple_repeat Simple_repeat 1 36 0 879 275 56 50 chr11 139828146 139828364 -8955108 - ERVL LTR ERVL -2586 3178 2956 2332 99 3 6 chr11 139828364 139828677 -8954795 - AluSx SINE Alu 0 312 1 879 275 56 50 chr11 139828677 139828760 -8954712 - ERVL LTR ERVL -2808 2956 2875 816 250 92 79 chr11 139828766 139829287 -8954185 - ERVL LTR ERVL -2914 2740 2156 637 82 10 21 chr11 139829287 139829384 -8954088 - AluY SINE Alu -1 310 215 419 297 162 11 chr11 139829386 139829571 -8953901 - ERVL LTR ERVL -3481 2173 1961 782 321 83 58 chr11 139829576 139830295 -8953177 - ERVL LTR ERVL -3726 1270 534 244 232 0 14 chr11 139830909 139830976 -8952496 - LTR33 LTR ERVL -32 489 424 584 300 177 24 chr11 139830976 139831440 -8952032 + MLT1H LTR MaLR 2 536 -13 1050 216 163 26 chr11 139831519 139831825 -8951647 - LTR33 LTR ERVL -168 353 6 489 190 30 0 chr11 139831830 139831930 -8951542 - HAL1 LINE L1 -856 1651 1549 3587 156 32 32 chr11 139831931 139832086 -8951386 + L1MA8 LINE L1 5627 5781 -510 2268 104 0 3 chr11 139832086 139832384 -8951088 + AluY SINE Alu 1 297 -14 3587 156 32 32 chr11 139832384 139832643 -8950829 + L1MA8 LINE L1 5781 6039 -252 4144 121 5 26 chr11 139832643 139833255 -8950217 + MER7C DNA MER2_type 4 602 0 3587 156 32 32 chr11 139833255 139833348 -8950124 + L1MA8 LINE L1 6039 6131 -160 2064 149 0 13 chr11 139833348 139833664 -8949808 + AluSx SINE Alu 1 312 0 3587 156 32 32 chr11 139833664 139833814 -8949658 + L1MA8 LINE L1 6130 6286 -5 1025 134 15 145 chr11 139833814 139834021 -8949451 + L1MB8 LINE L1 5931 6163 -15 510 17 0 0 chr11 139834021 139834080 -8949392 + (TTTTA)n Simple_repeat Simple_repeat 3 61 0 2277 53 0 14 chr11 139834083 139834364 -8949108 - AluY SINE Alu -34 277 1 1589 117 120 7 chr11 139834366 139834640 -8948832 - AluSg SINE Alu -5 305 1 1025 134 15 145 chr11 139834640 139834694 -8948778 + L1MB8 LINE L1 6105 6164 -14 2117 253 136 95 chr11 139834724 139835138 -8948334 - HAL1 LINE L1 -979 1528 1132 1861 150 34 7 chr11 139835138 139835431 -8948041 - AluSx SINE Alu -11 301 1 2117 253 136 95 chr11 139835431 139835457 -8948015 - HAL1 LINE L1 -1375 1132 1109 2794 175 24 32 chr11 139835457 139836051 -8947421 - L1MB7 LINE L1 -19 6165 5577 2117 253 136 95 chr11 139836051 139836778 -8946694 - HAL1 LINE L1 -1398 1109 287 2093 108 0 10 chr11 139836778 139837066 -8946406 - AluSx SINE Alu 0 312 28 2117 253 136 95 chr11 139837066 139837365 -8946107 - HAL1 LINE L1 -2220 287 1 994 226 208 12 chr11 139837416 139837991 -8945481 - LTR50 LTR ERVL -3 792 3 844 169 0 0 chr11 139838257 139838387 -8945085 - FLAM_C SINE Alu -3 130 1 640 262 82 11 chr11 139838522 139838730 -8944742 - L1MB7 LINE L1 -608 5558 5325 1701 169 10 17 chr11 139838730 139839031 -8944441 - AluJo SINE Alu -13 299 1 640 262 82 11 chr11 139839031 139839089 -8944383 - L1MB7 LINE L1 -841 5325 5273 470 251 6 38 chr11 139839351 139839534 -8943938 - L1MB7 LINE L1 -876 5270 5094 1276 142 9 19 chr11 139839628 139839860 -8943612 - AluJb SINE Alu 0 306 77 988 200 0 41 chr11 139839876 139840071 -8943401 - MER20 DNA MER1_type -31 188 2 261 0 0 0 chr11 139840357 139840386 -8943086 + (TTTTA)n Simple_repeat Simple_repeat 3 31 0 5680 29 0 6 chr11 139840387 139841014 -8942458 - SVA Other Other -2 1384 762 1616 167 35 91 chr11 139841212 139841608 -8941864 - MLT1A2 LTR MaLR 0 374 1 618 306 150 28 chr11 139841787 139842114 -8941358 - LTR16A LTR ERVL -1 449 90 875 99 8 0 chr11 139842409 139842540 -8940932 - L1P LINE L1 -1045 5101 4970 2288 103 0 3 chr11 139842918 139843228 -8940244 - AluSc SINE Alu 0 309 1 383 241 0 9 chr11 139843560 139843651 -8939821 + L1 LINE L1 4403 4494 -1652 1742 144 77 18 chr11 139843651 139843936 -8939536 + AluJb SINE Alu 1 302 -10 5304 117 50 3 chr11 139843936 139844787 -8938685 + L1PA16 LINE L1 5278 6157 -9 195 42 0 0 chr11 139845204 139845228 -8938244 + (TC)n Simple_repeat Simple_repeat 1 24 0 294 108 0 0 chr11 139845273 139845310 -8938162 - tRNA-Tyr-TAC tRNA tRNA -39 37 1 302 337 54 43 chr11 139845590 139845774 -8937698 + MLT1K LTR MaLR 61 246 -342 1262 225 137 6 chr11 139845855 139846387 -8937085 - L2 LINE L2 -56 3257 2648 979 138 191 5 chr11 139846387 139846576 -8936896 + MLT2B2 LTR ERVL 1 224 -291 1942 184 22 30 chr11 139846683 139847047 -8936425 + MLT2B3 LTR ERVL 194 554 0 230 289 93 31 chr11 139848276 139848373 -8935099 + MLT1E2 LTR MaLR 512 614 -12 2113 215 73 18 chr11 139848395 139848958 -8934514 - L2 LINE L2 -688 2626 2033 195 42 0 0 chr11 139849059 139849083 -8934389 + (TG)n Simple_repeat Simple_repeat 1 24 0 203 280 215 0 chr11 139850172 139850279 -8933193 + L3 LINE CR1 1192 1321 -256 1713 82 5 0 chr11 139850430 139850650 -8932822 - AluSg/x SINE Alu -6 306 86 467 278 132 38 chr11 139850650 139850862 -8932610 + L3 LINE CR1 1345 1576 -1 250 203 14 54 chr11 139851815 139851889 -8931583 - L1ME3 LINE L1 -8 6154 6084 354 283 40 67 chr11 139852016 139852313 -8931159 - L1MC4a LINE L1 -1814 5994 5706 686 191 76 8 chr11 139852801 139852932 -8930540 + MER63 DNA MER1_type 1 766 -70 2525 64 0 0 chr11 139852964 139853262 -8930210 - AluY SINE Alu -13 298 1 195 277 248 10 chr11 139854824 139854925 -8928547 - MER5A DNA MER1_type 0 189 65 492 162 95 0 chr11 139854925 139854937 -8928535 - L1MA4A LINE L1 0 6303 6292 13724 175 16 27 chr11 139854937 139855773 -8927699 - L1PB4 LINE L1 -1 7176 6333 1702 134 106 3 chr11 139855773 139856056 -8927416 - AluJb SINE Alu 0 312 1 13724 175 16 27 chr11 139856056 139856644 -8926828 - L1PB4 LINE L1 -844 6333 5740 572 114 0 0 chr11 139856644 139856723 -8926749 - MADE1 DNA Mariner 0 80 2 13724 175 16 27 chr11 139856723 139857248 -8926224 - L1PB4 LINE L1 -1437 5740 5211 1464 222 4 0 chr11 139857248 139857527 -8925945 + AluJo SINE Alu 1 280 -32 13724 175 16 27 chr11 139857527 139859155 -8924317 - L1PB4 LINE L1 -1966 5211 3622 1197 127 47 11 chr11 139859157 139859476 -8923996 - THE1C LTR MaLR 0 375 1 11113 107 45 9 chr11 139859480 139861002 -8922470 - THE1C-int LTR MaLR -4 1576 1 1997 126 35 0 chr11 139861009 139861295 -8922177 + AluSx SINE Alu 1 296 -16 1185 96 55 11 chr11 139861299 139861611 -8921861 - THE1C LTR MaLR 0 375 1 5610 194 25 20 chr11 139861611 139863299 -8920173 - L1PB4 LINE L1 -3543 3624 1930 1051 196 20 0 chr11 139863299 139863498 -8919974 - MER105 DNA DNA -1 203 1 5610 194 25 20 chr11 139863498 139863527 -8919945 - L1PB4 LINE L1 -5237 1930 1903 207 308 77 0 chr11 139863665 139863730 -8919742 - L2 LINE L2 0 3313 3244 67 60 0 0 chr11 139863868 139863984 -8919488 + AT_rich Low_complexity Low_complexity 1 116 0 3334 231 97 101 chr11 139864646 139866406 -8917066 - L1MC5 LINE L1 -30 7931 6166 1073 69 0 0 chr11 139866406 139866536 -8916936 - AluSg/x SINE Alu -15 295 166 3334 231 97 101 chr11 139866536 139866692 -8916780 - L1MC5 LINE L1 -1795 6166 6011 1462 157 23 92 chr11 139866692 139866997 -8916475 + AluJb SINE Alu 2 285 -17 354 23 0 0 chr11 139866998 139867041 -8916431 + (CA)n Simple_repeat Simple_repeat 2 44 0 3334 231 97 101 chr11 139867041 139867085 -8916387 - L1MC5 LINE L1 -1950 6011 5968 774 148 0 59 chr11 139867085 139867220 -8916252 + FLAM_C SINE Alu 1 127 -6 3334 231 97 101 chr11 139867220 139867809 -8915663 - L1MC5 LINE L1 -1993 5968 5255 376 302 74 70 chr11 139867819 139868117 -8915355 - L1MC5 LINE L1 -906 5240 4942 241 374 40 0 chr11 139868192 139868291 -8915181 + L3 LINE CR1 1435 1537 -40 1093 194 5 5 chr11 139868644 139868840 -8914632 - L1PA15 LINE L1 0 6165 5970 859 162 7 0 chr11 139869258 139869394 -8914078 - FAM SINE Alu -48 137 1 682 125 143 0 chr11 139871189 139871301 -8912171 - FLAM_A SINE Alu -5 128 1 1691 173 24 7 chr11 139871448 139871743 -8911729 - AluJo SINE Alu -12 300 1 525 283 119 7 chr11 139871995 139872275 -8911197 - L1ME LINE L1 -559 5603 5294 523 296 43 48 chr11 139872282 139872653 -8910819 - L1ME LINE L1 -877 5269 4901 2243 105 10 0 chr11 139872655 139872951 -8910521 + AluSp SINE Alu 1 299 -14 269 284 77 45 chr11 139876047 139876202 -8907270 - L1ME3A LINE L1 -77 6093 5934 1001 83 0 0 chr11 139876255 139876376 -8907096 + AluSq/x SINE Alu 13 133 -179 2252 88 0 47 chr11 139876380 139876697 -8906775 + AluSg SINE Alu 1 302 -8 377 250 31 31 chr11 139877026 139877154 -8906318 + L2 LINE L2 3186 3313 0 486 312 80 60 chr11 139879210 139879511 -8903961 - L2 LINE L2 -1 3271 2965 695 258 84 11 chr11 139879709 139879899 -8903573 + MIR SINE MIR 29 232 -30 447 318 154 31 chr11 139879953 139880583 -8902889 - L2 LINE L2 -2 3270 2545 217 158 88 53 chr11 139880969 139881026 -8902446 - L2 LINE L2 0 3272 3214 1251 137 0 0 chr11 139882606 139882788 -8900684 - AluSg/x SINE Alu 0 312 131 1533 233 68 44 chr11 139882791 139883290 -8900182 - MLT1E LTR MaLR -2 591 81 2346 83 3 17 chr11 139883921 139884221 -8899251 + AluSc SINE Alu 1 296 -13 180 196 87 0 chr11 139884338 139884384 -8899088 + L2 LINE L2 3263 3312 -1 2181 79 7 0 chr11 139884857 139885160 -8898312 - AluY SINE Alu 0 305 1 2294 102 3 0 chr11 139885298 139885592 -8897880 - AluSq SINE Alu -18 295 1 192 250 0 0 chr11 139886530 139886574 -8896898 + L2 LINE L2 3262 3305 -8 235 234 106 11 chr11 139887925 139888019 -8895453 - MIR SINE MIR -13 249 147 2420 96 0 0 chr11 139888134 139888447 -8895025 - AluSq SINE Alu 0 313 1 1389 144 5 14 chr11 139888805 139889020 -8894452 - AluJo SINE Alu -18 294 82 23 33 0 0 chr11 139889434 139889464 -8894008 + AT_rich Low_complexity Low_complexity 1 30 0 296 47 0 23 chr11 139889624 139889667 -8893805 + (CA)n Simple_repeat Simple_repeat 2 43 0 198 0 0 0 chr11 139890191 139890213 -8893259 + (TG)n Simple_repeat Simple_repeat 1 22 0 201 128 51 0 chr11 139891724 139891763 -8891709 + A-rich Low_complexity Low_complexity 1 41 0 21 36 0 0 chr11 139891771 139891799 -8891673 + AT_rich Low_complexity Low_complexity 1 28 0 904 224 109 72 chr11 139892116 139892245 -8891227 - MER2 DNA MER2_type -2 343 220 2049 118 77 24 chr11 139892245 139892585 -8890887 - MER46B DNA MER2_type 0 236 4 904 224 109 72 chr11 139892585 139892786 -8890686 - MER2 DNA MER2_type -125 220 1 2358 85 10 0 chr11 139892979 139893285 -8890187 + AluY SINE Alu 1 309 -2 2421 88 0 3 chr11 139894249 139894557 -8888915 - AluSg SINE Alu -3 307 1 359 183 37 24 chr11 139894573 139894655 -8888817 - L2 LINE L2 -32 3240 3158 195 42 0 0 chr11 139894672 139894696 -8888776 + (CAAAA)n Simple_repeat Simple_repeat 5 28 0 697 205 19 50 chr11 139895133 139895294 -8888178 - L2 LINE L2 -4 3309 3154 2187 95 10 23 chr11 139895742 139896048 -8887424 - AluSx SINE Alu -10 302 1 1020 223 18 18 chr11 139896050 139896274 -8887198 - MLT1E2 LTR MaLR -398 228 5 214 213 85 0 chr11 139896605 139896652 -8886820 - L2 LINE L2 -50 3263 3213 2390 87 0 7 chr11 139896890 139897188 -8886284 - AluSg SINE Alu -14 296 1 226 257 29 29 chr11 139897238 139897308 -8886164 + L2 LINE L2 3180 3249 -23 2367 106 0 0 chr11 139897652 139897963 -8885509 - AluSq SINE Alu -2 311 1 415 248 161 91 chr11 139899056 139899298 -8884174 - MIR SINE MIR -2 260 2 717 288 28 21 chr11 139899683 139899971 -8883501 + L1ME LINE L1 5501 5790 -331 591 239 175 104 chr11 139900416 139900918 -8882554 - MLT1H LTR MaLR 0 549 12 839 287 40 37 chr11 139901519 139901895 -8881577 - L1ME4a LINE L1 -267 5854 5478 276 280 166 40 chr11 139901899 139902074 -8881398 + L2 LINE L2 2897 3093 -179 227 333 17 67 chr11 139902789 139902853 -8880619 - L2 LINE L2 -15 3298 3241 2257 63 49 0 chr11 139902853 139903138 -8880334 + AluSp SINE Alu 1 299 -14 227 333 17 67 chr11 139903138 139903193 -8880279 - L2 LINE L2 -72 3241 3185 265 318 47 9 chr11 139903302 139903409 -8880063 + MIR SINE MIR 6 116 -146 189 0 0 0 chr11 139904079 139904100 -8879372 + (T)n Simple_repeat Simple_repeat 1 21 0 1204 246 149 31 chr11 139904876 139905298 -8878174 + L2 LINE L2 2505 2976 -338 1428 243 73 60 chr11 139905301 139905836 -8877636 - MLT1E LTR MaLR 0 593 52 672 243 37 28 chr11 139905928 139906142 -8877330 + L2 LINE L2 3098 3313 0 2383 94 0 3 chr11 139906468 139906776 -8876696 - AluSx SINE Alu -5 307 1 385 196 179 12 chr11 139906877 139906988 -8876484 - L1MB5 LINE L1 -7 6167 6032 363 224 115 51 chr11 139907381 139907537 -8875935 - MLT1H LTR MaLR 0 549 384 882 280 26 19 chr11 139907565 139907829 -8875643 - MLT1H LTR MaLR -271 278 13 1197 236 68 75 chr11 139907897 139908448 -8875024 - MLT1H LTR MaLR 0 549 1 577 302 101 34 chr11 139908848 139909226 -8874246 - MLT1I LTR MaLR -6 403 1 188 281 31 31 chr11 139909264 139909328 -8874144 + L2 LINE L2 3209 3272 0 205 220 17 17 chr11 139909434 139909493 -8873979 + CT-rich Low_complexity Low_complexity 1 59 0 25 0 0 0 chr11 139911022 139911047 -8872425 + AT_rich Low_complexity Low_complexity 1 25 0 220 238 0 0 chr11 139911833 139911875 -8871597 - L3 LINE CR1 -12 1565 1524 788 33 0 0 chr11 139911904 139911994 -8871478 - 5S rRNA rRNA -31 90 1 256 248 133 9 chr11 139913501 139913606 -8869866 - L1ME4a LINE L1 -5 6116 5999 601 284 107 19 chr11 139913642 139914069 -8869403 - L1ME4a LINE L1 -207 5914 5441 2130 80 35 3 chr11 139914101 139914390 -8869082 - AluY SINE Alu -13 298 1 2140 150 17 3 chr11 139915564 139915910 -8867562 + MLT1A1 LTR MaLR 1 351 -14 193 253 126 2 chr11 139916504 139916588 -8866884 - MIR SINE MIR -67 141 50 1455 66 0 0 chr11 139919082 139919263 -8864209 - AluY SINE Alu -2 309 129 715 234 100 92 chr11 139919404 139919862 -8863610 - L1MC4a LINE L1 -1946 5862 5401 23 0 0 0 chr11 139919909 139919932 -8863540 + AT_rich Low_complexity Low_complexity 1 23 0 235 320 13 39 chr11 139919956 139920187 -8863285 - L1MC4a LINE L1 -895 5251 5027 261 0 0 0 chr11 139920302 139920331 -8863141 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 270 0 0 0 chr11 139920330 139920360 -8863112 + (TA)n Simple_repeat Simple_repeat 1 30 0 354 235 168 7 chr11 139920478 139920627 -8862845 - L1MC4a LINE L1 -1443 4703 4531 296 306 184 40 chr11 139921136 139921364 -8862108 + MIR SINE MIR 4 262 0 659 203 23 23 chr11 139923678 139923811 -8859661 + MER94 DNA DNA 2 134 0 243 0 0 0 chr11 139924036 139924063 -8859409 + (T)n Simple_repeat Simple_repeat 1 27 0 190 217 83 67 chr11 139924328 139924388 -8859084 + L2 LINE L2 3205 3265 -7 278 261 208 23 chr11 139924756 139924886 -8858586 + MIR SINE MIR 35 188 -74 404 269 225 6 chr11 139924912 139925072 -8858400 - MIR SINE MIR 0 262 68 211 240 180 10 chr11 139925932 139926032 -8857440 - L2 LINE L2 -15 3298 3182 230 195 0 0 chr11 139926059 139926100 -8857372 + L2 LINE L2 3227 3267 -5 343 282 64 14 chr11 139926626 139926846 -8856626 - L1ME4a LINE L1 -160 5961 5731 283 314 98 21 chr11 139927117 139927311 -8856161 - L2 LINE L2 -213 3059 2851 1594 183 33 4 chr11 139929490 139929764 -8853708 + AluJo SINE Alu 1 282 -30 398 221 48 95 chr11 139930181 139930412 -8853060 + L2 LINE L2 3008 3227 -86 362 193 28 21 chr11 139931407 139931552 -8851920 + GA-rich Low_complexity Low_complexity 2 147 0 1648 175 152 76 chr11 139931858 139932292 -8851180 + MLT1C LTR MaLR 1 467 0 2077 113 0 7 chr11 139932387 139932697 -8850775 - AluSx SINE Alu 0 308 1 789 296 0 15 chr11 139932726 139932932 -8850540 - MIR SINE MIR -48 214 12 2341 101 0 0 chr11 139933046 139933344 -8850128 + AluSc SINE Alu 1 298 -11 2424 88 0 3 chr11 139933452 139933759 -8849713 + AluSg SINE Alu 1 306 -4 189 0 0 0 chr11 139933903 139933924 -8849548 + (A)n Simple_repeat Simple_repeat 1 21 0 2112 230 69 76 chr11 139933945 139935236 -8848236 + L1ME3A LINE L1 4847 6136 -34 813 149 0 0 chr11 139935257 139935378 -8848094 - L1PB3 LINE L1 -1 6153 6033 1528 232 170 39 chr11 139935634 139936169 -8847303 - MER115 DNA AcHobo -1 692 88 273 205 241 8 chr11 139936332 139936454 -8847018 - MIR SINE MIR -66 142 43 207 0 0 0 chr11 139937580 139937603 -8845869 + (A)n Simple_repeat Simple_repeat 1 23 0 1289 263 167 47 chr11 139938856 139939659 -8843813 - HAL1 LINE L1 -1606 901 3 306 0 0 0 chr11 139939798 139939832 -8843640 + (A)n Simple_repeat Simple_repeat 1 34 0 3789 252 41 52 chr11 139940005 139940307 -8843165 - L1M4 LINE L1 -1359 4787 4483 2311 96 3 3 chr11 139940307 139940608 -8842864 + AluSq SINE Alu 1 301 -12 3789 252 41 52 chr11 139940608 139940900 -8842572 - L1M4 LINE L1 -1663 4483 4189 414 0 0 0 chr11 139940900 139940946 -8842526 + (TTTC)n Simple_repeat Simple_repeat 4 49 0 3789 252 41 52 chr11 139940946 139941682 -8841790 - L1M4 LINE L1 -1957 4189 3446 2222 118 0 9 chr11 139941682 139941997 -8841475 - AluSx SINE Alu 0 312 1 3789 252 41 52 chr11 139941997 139942038 -8841434 - L1M4 LINE L1 -2700 3446 3406 2114 214 164 0 chr11 139942038 139942525 -8840947 - MLT1F1 LTR MaLR 0 567 1 3789 252 41 52 chr11 139942525 139942614 -8840858 - L1M4 LINE L1 -2740 3406 3340 302 270 76 71 chr11 139942620 139942831 -8840641 - L1MC4 LINE L1 -1 8041 7830 2253 106 0 7 chr11 139942862 139943165 -8840307 - AluSq SINE Alu -12 301 1 605 201 64 3 chr11 139943170 139943326 -8840146 - L1ME2 LINE L1 0 6164 6021 2383 81 0 3 chr11 139943361 139943659 -8839813 - AluSg SINE Alu -13 297 1 304 342 33 33 chr11 139943664 139943997 -8839475 - L1MCc LINE L1 -4924 1499 1167 2248 81 3 3 chr11 139944766 139945083 -8838389 + AluY SINE Alu 1 317 0 283 184 79 13 chr11 139945290 139945366 -8838106 - L1P5 LINE L1 -697 5459 5379 1698 181 60 36 chr11 139945369 139945411 -8838061 - MLT1F1 LTR MaLR -12 555 516 2330 92 0 3 chr11 139945411 139945703 -8837769 + AluSg1 SINE Alu 1 291 -18 1698 181 60 36 chr11 139945703 139946024 -8837448 - MLT1F1 LTR MaLR -51 516 183 185 325 24 24 chr11 139947058 139947141 -8836331 + MIR SINE MIR 124 206 -56 2832 171 67 2 chr11 139948352 139949135 -8834337 + L1MB7 LINE L1 5022 5851 -333 237 33 0 0 chr11 139949315 139949345 -8834127 + (A)n Simple_repeat Simple_repeat 1 30 0 426 313 99 13 chr11 139949411 139949887 -8833585 - L1M4 LINE L1 -1603 4543 4027 6160 131 16 23 chr11 139950062 139950434 -8833038 - L1PB1 LINE L1 0 6151 5778 279 0 0 0 chr11 139950434 139950465 -8833007 + (CA)n Simple_repeat Simple_repeat 2 32 0 6160 131 16 23 chr11 139950465 139951613 -8831859 - L1PB1 LINE L1 -373 5778 4641 841 142 22 30 chr11 139951749 139951883 -8831589 - AluJo SINE Alu -178 134 2 1002 97 0 0 chr11 139952250 139952394 -8831078 + (TA)n Simple_repeat Simple_repeat 2 145 0 240 183 0 33 chr11 139952493 139952553 -8830919 + (TA)n Simple_repeat Simple_repeat 2 59 0 22 0 0 0 chr11 139952971 139952993 -8830479 + AT_rich Low_complexity Low_complexity 1 22 0 272 59 0 0 chr11 139954135 139954169 -8829303 - MLT2C1 LTR ERVL 0 397 364 2064 208 24 7 chr11 139954232 139954650 -8828822 - MLT2C2 LTR ERVL -39 425 1 412 255 51 0 chr11 139954650 139954748 -8828724 - ERVL-C2 LTR ERVL -8 5756 5654 370 313 45 0 chr11 139954748 139954762 -8828710 - Ricksha DNA DNA -1701 345 229 297 331 25 25 chr11 139954841 139954962 -8828510 + L2 LINE L2 2897 3017 -255 279 175 0 0 chr11 139955579 139955636 -8827836 + T-rich Low_complexity Low_complexity 1 57 0 313 294 25 17 chr11 139955859 139955978 -8827494 - LTR67 LTR ERVL -3 554 435 2326 149 24 53 chr11 139956148 139956604 -8826868 - MSTB2 LTR MaLR 0 457 15 190 274 152 49 chr11 139956827 139956991 -8826481 + L2 LINE L2 2975 3155 -158 273 270 56 116 chr11 139957000 139957233 -8826239 - L1MEd LINE L1 -5543 576 358 332 349 57 50 chr11 139957296 139957594 -8825878 - L1MEd LINE L1 -5812 307 8 465 19 0 0 chr11 139957674 139957728 -8825744 + (T)n Simple_repeat Simple_repeat 1 54 0 198 0 0 0 chr11 139957753 139957775 -8825697 + (G)n Simple_repeat Simple_repeat 1 22 0 2495 87 0 0 chr11 139957903 139958236 -8825236 - AluSg1 SINE Alu 0 333 1 21 0 0 0 chr11 139958847 139958868 -8824604 + AT_rich Low_complexity Low_complexity 1 21 0 196 320 39 39 chr11 139959114 139959242 -8824230 + MIR SINE MIR 21 148 -114 378 217 0 0 chr11 139959242 139959311 -8824161 + Tigger2 DNA MER2_type 1 69 -2649 * 2860 132 18 11 chr11 139959296 139959744 -8823728 + Tigger2 DNA MER2_type 2268 2718 0 366 283 147 11 chr11 139959769 139959960 -8823512 + HAL1 LINE L1 493 709 -1798 872 263 16 0 chr11 139960002 139960188 -8823284 + MER5A DNA MER1_type 1 189 0 27 0 0 0 chr11 139960277 139960304 -8823168 + AT_rich Low_complexity Low_complexity 1 27 0 2162 174 17 2 chr11 139961440 139961888 -8821584 + MER89 LTR ERV1 2 555 -4 1991 116 7 0 chr11 139962117 139962419 -8821053 + AluSg1 SINE Alu 1 304 0 1479 262 127 35 chr11 139962445 139963024 -8820448 + MER115 DNA AcHobo 62 4031 0 1769 158 14 4 chr11 139963157 139963435 -8820037 - L1MC1 LINE L1 -5 6328 6048 2407 118 13 8 chr11 139963453 139963826 -8819646 - L1MC1 LINE L1 -247 6086 5712 7049 218 12 40 chr11 139963826 139965711 -8817761 - L1M4 LINE L1 -1603 4543 2713 433 339 89 43 chr11 139965895 139966500 -8816972 - L1ME3 LINE L1 -272 5890 5258 325 263 95 22 chr11 139966764 139966901 -8816571 + MIR SINE MIR 116 262 0 2321 105 7 0 chr11 139967027 139967333 -8816139 + AluSx SINE Alu 1 308 -4 328 102 114 0 chr11 139967530 139967618 -8815854 + GA-rich Low_complexity Low_complexity 3 100 0 1032 210 11 0 chr11 139968952 139969138 -8814334 + MER5A DNA MER1_type 1 188 -1 590 248 8 0 chr11 139969508 139969629 -8813843 - MER5B DNA MER1_type 0 178 57 22 0 0 0 chr11 139969663 139969685 -8813787 + AT_rich Low_complexity Low_complexity 1 22 0 261 259 86 12 chr11 139969977 139970076 -8813396 - MIR SINE MIR -76 132 49 453 300 8 0 chr11 139970241 139970361 -8813111 - MIR3 SINE MIR -78 130 10 32 26 0 0 chr11 139970395 139970434 -8813038 + AT_rich Low_complexity Low_complexity 1 39 0 289 255 186 17 chr11 139970481 139970712 -8812760 - L1ME4a LINE L1 -11 6110 5841 2002 140 39 3 chr11 139970890 139971226 -8812246 + MER46B DNA MER2_type 1 223 -13 1504 234 0 3 chr11 139971575 139971874 -8811598 - AluJo SINE Alu -14 298 1 287 319 25 8 chr11 139972455 139972574 -8810898 + (CACCAT)n Simple_repeat Simple_repeat 6 126 0 1249 201 30 17 chr11 139972921 139973219 -8810253 - L1MD2 LINE L1 -2 6357 6056 1182 195 9 129 chr11 139973223 139973510 -8809962 - L1MC5 LINE L1 -933 7028 6811 3195 126 45 4 chr11 139973510 139974001 -8809471 + MER9 LTR ERVK 1 511 0 1182 195 9 129 chr11 139974001 139974154 -8809318 - L1MC5 LINE L1 -1150 6811 6641 265 230 58 0 chr11 139974198 139974285 -8809187 - HAL1b LINE L1 -997 351 260 22 35 0 0 chr11 139974697 139974726 -8808746 + AT_rich Low_complexity Low_complexity 1 29 0 1223 209 40 26 chr11 139975004 139975419 -8808053 + L1ME2 LINE L1 5160 5579 -585 517 216 6 105 chr11 139975421 139975583 -8807889 + MSTB2 LTR MaLR 15 160 -297 * 734 156 8 79 chr11 139975574 139975744 -8807728 + MSTB2 LTR MaLR 273 457 0 1964 216 19 25 chr11 139975744 139976221 -8807251 + L1ME2 LINE L1 5574 6047 -117 311 275 107 43 chr11 139976285 139976485 -8806987 + L1ME4a LINE L1 5347 5556 -565 2575 174 55 2 chr11 139976488 139976523 -8806949 - LTR42 LTR ERVL 0 495 463 6478 29 1 0 chr11 139976523 139977288 -8806184 + L1PA3 LINE L1 5390 6155 0 2575 174 55 2 chr11 139977288 139977722 -8805750 - LTR42 LTR ERVL -32 463 1 532 261 111 14 chr11 139977787 139978200 -8805272 + L1ME4a LINE L1 5620 6072 -49 846 149 0 15 chr11 139978381 139978515 -8804957 + FLAM_C SINE Alu 1 132 -1 1318 222 0 8 chr11 139978526 139978774 -8804698 + AluJo SINE Alu 12 257 -55 26 50 0 0 chr11 139978795 139978835 -8804637 + AT_rich Low_complexity Low_complexity 1 40 0 537 300 135 56 chr11 139978871 139978949 -8804523 - L2 LINE L2 -870 2444 2374 1759 102 144 18 chr11 139978949 139979282 -8804190 + THE1C LTR MaLR 1 375 0 537 300 135 56 chr11 139979282 139979700 -8803772 - L2 LINE L2 -940 2374 1909 203 305 46 46 chr11 139979705 139979836 -8803636 - MIR SINE MIR -66 196 66 234 314 57 9 chr11 139979877 139979982 -8803490 + L3b LINE CR1 1354 1463 -120 2062 144 0 0 chr11 139980264 139980555 -8802917 - AluSx SINE Alu -20 292 2 459 320 46 11 chr11 139981331 139981506 -8801966 - MIR SINE MIR -78 184 4 211 237 41 82 chr11 139981951 139982048 -8801424 + L2 LINE L2 2596 2688 -626 631 230 77 43 chr11 139982120 139982313 -8801159 - MIR SINE MIR -46 216 14 453 266 47 0 chr11 139982313 139982441 -8801031 + MER94 DNA DNA 1 134 0 631 230 77 43 chr11 139982441 139982456 -8801016 - MIR SINE MIR -248 14 1 14217 43 30 0 chr11 139982608 139982731 -8800741 - L1P LINE L1 -1237 4909 4791 3090 61 0 2 chr11 139982731 139983124 -8800348 + L1PA8 LINE L1 5777 6171 -1 14217 43 30 0 chr11 139983124 139984813 -8798659 - L1P LINE L1 -1355 4791 3042 7640 28 0 0 chr11 139984813 139986308 -8797164 + L1PA3 LINE L1 4690 6184 0 836 239 138 18 chr11 139987482 139987758 -8795714 + L2 LINE L2 3005 3313 0 3122 242 46 23 chr11 139987886 139988486 -8794986 - L1ME2 LINE L1 -300 5864 5279 1585 125 3 66 chr11 139988486 139988773 -8794699 - AluSx SINE Alu 0 312 44 3122 242 46 23 chr11 139988773 139989827 -8793645 - L1ME2 LINE L1 -885 5279 4179 207 0 0 0 chr11 139990037 139990060 -8793412 + (T)n Simple_repeat Simple_repeat 1 23 0 270 0 0 0 chr11 139990203 139990233 -8793239 + (T)n Simple_repeat Simple_repeat 1 30 0 583 267 76 42 chr11 139990368 139991030 -8792442 + L1MC/D LINE L1 4747 5433 -747 571 286 117 38 chr11 139991060 139991427 -8792045 + L1MEc LINE L1 35 430 -5966 * 1137 260 40 31 chr11 139991425 139991954 -8791518 + L1MEc LINE L1 659 1157 -5061 2418 71 0 0 chr11 139991954 139992251 -8791221 + AluY SINE Alu 1 297 -14 974 245 52 75 chr11 139992728 139992756 -8790716 - L1M4c LINE L1 -5675 971 944 2081 179 35 20 chr11 139992756 139993090 -8790382 - L1MB7 LINE L1 -16 6168 5824 2315 103 0 0 chr11 139993090 139993391 -8790081 - AluSg SINE Alu -9 301 1 2081 179 35 20 chr11 139993391 139993514 -8789958 - L1MB7 LINE L1 -360 5824 5704 974 245 52 75 chr11 139993514 139993894 -8789578 - L1M4c LINE L1 -5702 944 350 1954 176 71 46 chr11 139993919 139993954 -8789518 + L1MA9 LINE L1 5748 5781 -531 382 79 32 0 chr11 139993954 139994017 -8789455 + (CA)n Simple_repeat Simple_repeat 2 66 0 1954 176 71 46 chr11 139994017 139994499 -8788973 + L1MA9 LINE L1 5781 6278 -34 716 268 68 39 chr11 139994514 139994705 -8788767 - L1M4c LINE L1 -6219 323 118 189 0 0 0 chr11 139994705 139994726 -8788746 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 716 268 68 39 chr11 139994726 139994844 -8788628 - L1M4c LINE L1 -6424 118 5 490 276 32 13 chr11 139994923 139995079 -8788393 + MIR SINE MIR 33 191 -71 698 207 0 0 chr11 139995255 139995390 -8788082 - AluJb SINE Alu -4 308 174 198 0 0 0 chr11 139995399 139995421 -8788051 + (TAA)n Simple_repeat Simple_repeat 2 23 0 261 130 22 0 chr11 139995482 139995528 -8787944 + MER50 LTR ERV1 499 545 -189 852 238 22 5 chr11 139995622 139995807 -8787665 - MER5A DNA MER1_type -1 188 1 346 238 60 107 chr11 139995821 139995989 -8787483 + MIR SINE MIR 37 196 -66 320 308 151 13 chr11 139996220 139996379 -8787093 - MIR SINE MIR -1 261 81 247 238 0 0 chr11 139996397 139996460 -8787012 - HAL1 LINE L1 -169 2338 2276 496 28 56 0 chr11 139996502 139996574 -8786898 + (TTTTA)n Simple_repeat Simple_repeat 2 77 0 1905 133 4 0 chr11 139996574 139996853 -8786619 - AluSx SINE Alu -32 280 1 534 198 139 122 chr11 139997175 139997463 -8786009 - HAL1 LINE L1 -604 1903 1611 658 164 88 18 chr11 139997581 139997752 -8785720 + MER53 DNA DNA 1 183 -6 591 253 166 40 chr11 139997760 139998187 -8785285 - HAL1 LINE L1 -1030 1477 997 199 246 49 0 chr11 139998366 139998427 -8785045 - L3 LINE CR1 -2 1575 1512 1354 194 38 17 chr11 139998448 139998925 -8784547 - MLT1E LTR MaLR -2 591 11 998 174 87 5 chr11 139998922 139999117 -8784355 - MER20 DNA MER1_type -7 212 2 * 1449 146 7 40 chr11 139999311 139999585 -8783887 - L1MB7 LINE L1 -19 6165 5901 435 199 0 58 chr11 139999630 139999821 -8783651 + (TA)n Simple_repeat Simple_repeat 1 180 0 273 281 0 0 chr11 139999844 139999933 -8783539 + L1MC4 LINE L1 6614 6702 -1340 216 273 0 0 chr11 139999938 140000026 -8783446 + (TA)n Simple_repeat Simple_repeat 2 89 0 876 138 0 15 chr11 140000177 140000423 -8783049 - AluJb SINE Alu 0 312 1 1121 256 27 24 chr11 140000460 140000796 -8782676 - L1M4 LINE L1 -1997 4149 3813 22 0 0 0 chr11 140000804 140000826 -8782646 + AT_rich Low_complexity Low_complexity 1 22 0 1864 301 69 56 chr11 140000910 140002729 -8780743 - L1MEc LINE L1 -4454 1942 100 212 281 12 61 chr11 140002907 140002989 -8780483 + MIR SINE MIR 79 156 -106 288 346 33 26 chr11 140003012 140003165 -8780307 - MER5B DNA MER1_type -24 154 1 266 280 122 13 chr11 140004570 140004763 -8778709 + MIR SINE MIR 5 256 -6 467 352 47 5 chr11 140006411 140006604 -8776868 - MIR3 SINE MIR -6 202 2 25 31 0 0 chr11 140006700 140006732 -8776740 + AT_rich Low_complexity Low_complexity 1 32 0 255 61 0 0 chr11 140007441 140007474 -8775998 + (TG)n Simple_repeat Simple_repeat 1 33 0 417 319 22 10 chr11 140007582 140007761 -8775711 + MIR SINE MIR 15 190 -67 230 276 0 0 chr11 140007840 140007898 -8775574 + MIR SINE MIR 87 144 -64 355 175 0 19 chr11 140008092 140008195 -8775277 + (TCTA)n Simple_repeat Simple_repeat 2 102 0 241 265 60 86 chr11 140009001 140009118 -8774354 + MLT1H LTR MaLR 431 544 -5 382 353 42 33 chr11 140009183 140009424 -8774048 - L1ME4a LINE L1 -202 5902 5660 248 178 0 0 chr11 140009462 140009507 -8773965 - L1ME4a LINE L1 -437 5667 5623 * 286 191 0 36 chr11 140009506 140009590 -8773882 - L1ME4a LINE L1 -3188 2941 2861 244 65 0 0 chr11 140010866 140010897 -8772575 - U2 snRNA snRNA -157 31 1 234 222 153 14 chr11 140010903 140010975 -8772497 + L2 LINE L2 2975 3056 -257 293 307 58 99 chr11 140011074 140011627 -8771845 - L1ME4a LINE L1 -5543 576 47 283 233 204 0 chr11 140014296 140014399 -8769073 + MIR SINE MIR 68 191 -71 257 316 95 11 chr11 140014584 140014679 -8768793 + MER115 DNA AcHobo 59 161 -532 * 1281 214 144 78 chr11 140014677 140015266 -8768206 - MER76 LTR ERV -60 628 1 279 54 0 0 chr11 140015300 140015337 -8768135 + (CCCTAA)n Simple_repeat Simple_repeat 3 39 0 695 210 27 73 chr11 140015337 140015556 -8767916 + MER115 DNA AcHobo 411 619 -74 325 103 52 0 chr11 140015556 140015614 -8767858 - L1MB3 LINE L1 -2 6181 6121 5006 179 25 8 chr11 140015615 140016386 -8767086 - L1 LINE L1 -1470 4676 3881 2071 124 28 0 chr11 140016386 140016676 -8766796 - AluSx SINE Alu -14 298 1 5006 179 25 8 chr11 140016676 140016940 -8766532 - L1 LINE L1 -2265 3881 3623 1871 115 36 0 chr11 140017296 140017549 -8765923 - AluSx SINE Alu -16 296 35 375 350 17 0 chr11 140018186 140018306 -8765166 - MER5B DNA MER1_type -1 177 56 1896 272 71 55 chr11 140019379 140020302 -8763170 + L1MEc LINE L1 92 1011 -5194 2297 109 3 0 chr11 140020302 140020606 -8762866 + AluSp SINE Alu 1 305 -8 1896 272 71 55 chr11 140020606 140020820 -8762652 + L1MEc LINE L1 1011 1220 -4985 * 6326 107 29 12 chr11 140020806 140021890 -8761582 + L1MA1 LINE L1 5201 6302 0 2490 235 54 30 chr11 140021860 140022970 -8760502 + L1ME2 LINE L1 4958 6155 -9 * 25 31 0 0 chr11 140022974 140023006 -8760466 + AT_rich Low_complexity Low_complexity 1 32 0 1121 162 0 0 chr11 140023014 140023218 -8760254 - L1MA6 LINE L1 -12 6288 6085 2507 99 3 5 chr11 140023219 140023603 -8759869 - L1MA6 LINE L1 -360 5940 5558 610 298 116 0 chr11 140023757 140024093 -8759379 + L1ME4a LINE L1 5494 5868 -253 348 177 5 2 chr11 140024144 140024218 -8759254 + L1ME4a LINE L1 1219 6047 -54 508 277 292 7 chr11 140024461 140024872 -8758600 - L2 LINE L2 -876 2438 1911 331 277 71 40 chr11 140025190 140025303 -8758169 - L1MEc LINE L1 -5334 1062 954 2001 106 7 0 chr11 140025303 140025576 -8757896 - AluSc SINE Alu -14 295 21 1566 161 4 8 chr11 140025576 140025830 -8757642 - AluJb SINE Alu -59 253 1 331 277 71 40 chr11 140025830 140025968 -8757504 - L1MEc LINE L1 -5441 955 802 480 100 0 0 chr11 140025977 140026037 -8757435 - FLAM_A SINE Alu -25 117 58 183 333 56 28 chr11 140026053 140026161 -8757311 - MIR SINE MIR -115 147 37 268 333 28 0 chr11 140026181 140026289 -8757183 + L3b LINE CR1 1354 1464 -119 358 373 28 23 chr11 140027432 140027609 -8755863 - MIR SINE MIR -73 189 12 35 88 0 0 chr11 140028207 140028298 -8755174 + AT_rich Low_complexity Low_complexity 1 91 0 444 286 60 24 chr11 140028321 140028489 -8754983 - MIR SINE MIR -71 191 18 292 297 11 0 chr11 140028498 140028589 -8754883 + MER94 DNA DNA 28 119 -15 263 320 60 60 chr11 140028679 140028929 -8754543 - L2 LINE L2 -936 2378 2129 182 324 44 0 chr11 140030337 140030405 -8753067 + MIR SINE MIR 126 196 -66 292 291 106 14 chr11 140030988 140031129 -8752343 + MIR SINE MIR 6 159 -103 386 314 48 37 chr11 140032827 140033015 -8750457 - MIR3 SINE MIR -13 195 6 483 198 38 89 chr11 140033489 140033646 -8749826 + MER33 DNA MER1_type 1 149 -175 927 139 0 14 chr11 140033648 140033792 -8749680 - FLAM_C SINE Alu -1 142 1 547 97 138 0 chr11 140033801 140033946 -8749526 + MER33 DNA MER1_type 152 316 -8 2000 103 0 63 chr11 140034020 140034342 -8749130 - AluSg SINE Alu 0 303 1 1400 247 115 15 chr11 140034830 140035352 -8748120 - L1ME3 LINE L1 -22 6140 5567 615 165 16 24 chr11 140035404 140035531 -8747941 - L1PA15 LINE L1 -2 6163 6038 1359 252 104 3 chr11 140035547 140036151 -8747321 - L1ME3 LINE L1 -921 5225 4561 749 306 87 29 chr11 140036159 140037525 -8745947 - L1MC/D LINE L1 -749 5397 4109 11284 192 52 18 chr11 140037691 140040580 -8742892 + L1PA13 LINE L1 1 3015 -3782 7098 159 139 6 chr11 140040584 140041280 -8742192 + L1PA13 LINE L1 4178 4780 -2017 378 0 0 0 chr11 140041280 140041322 -8742150 + (CA)n Simple_repeat Simple_repeat 2 43 0 7098 159 139 6 chr11 140041322 140042192 -8741280 + L1PA13 LINE L1 4780 5953 -844 * 9489 23 0 0 chr11 140042191 140043350 -8740122 - L1P LINE L1 -1497 4649 3491 2701 10 0 10 chr11 140043351 140043683 -8739789 + L1PA2 LINE L1 5846 6155 0 5733 102 0 2 chr11 140043683 140044536 -8738936 + L1PA13 LINE L1 5956 6806 -8 1240 142 43 30 chr11 140045044 140045277 -8738195 - L1MD1 LINE L1 -2 6240 6005 778 214 6 0 chr11 140045279 140045447 -8738025 + L1MD1 LINE L1 5814 5982 -377 1764 181 23 0 chr11 140046192 140046491 -8736981 - AluJo SINE Alu -6 306 1 267 333 69 13 chr11 140048149 140048308 -8735164 + MER5A DNA MER1_type 19 186 -3 * 658 258 19 19 chr11 140048166 140048325 -8735147 - MER5A DNA MER1_type -30 159 1 425 283 84 11 chr11 140048777 140048968 -8734504 - LTR16C LTR ERVL -215 276 72 2273 82 0 0 chr11 140049620 140049920 -8733552 - AluY SINE Alu 0 300 1 407 250 9 0 chr11 140049920 140050028 -8733444 + LTR33 LTR ERVL 13 121 -400 2344 108 0 0 chr11 140051262 140051568 -8731904 + AluSx SINE Alu 1 306 -6 183 100 0 0 chr11 140051688 140051718 -8731754 + (A)n Simple_repeat Simple_repeat 1 30 0 565 251 120 45 chr11 140052171 140052462 -8731010 + L1ME3 LINE L1 5762 6074 -88 1676 281 93 51 chr11 140052559 140053905 -8729567 + L1ME LINE L1 11 1450 -4778 210 37 0 0 chr11 140053905 140053932 -8729540 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1676 281 93 51 chr11 140053932 140054190 -8729282 + L1ME LINE L1 1450 1696 -4532 706 205 37 0 chr11 140054188 140054349 -8729123 + L1M3 LINE L1 5630 5796 -372 * 442 288 42 74 chr11 140054393 140054678 -8728794 + L1ME LINE L1 1739 2014 -4247 359 333 75 15 chr11 140054681 140054882 -8728590 + HAL1 LINE L1 677 889 -1618 251 257 129 0 chr11 140056028 140056098 -8727374 + MIR SINE MIR 68 146 -116 923 99 0 0 chr11 140056191 140056322 -8727150 + L1PA11 LINE L1 6040 6170 -4 342 0 0 0 chr11 140056349 140056387 -8727085 + (CAAAAA)n Simple_repeat Simple_repeat 4 41 0 184 208 0 83 chr11 140056584 140056632 -8726840 - L2 LINE L2 -11 3302 3259 248 274 0 0 chr11 140056745 140056796 -8726676 - LTR16B LTR ERVL 0 464 414 553 370 26 0 chr11 140056872 140057099 -8726373 - LTR16B LTR ERVL -228 236 4 2761 262 47 24 chr11 140057146 140058828 -8724644 + L1MEc LINE L1 1844 3527 -2688 7747 22 0 0 chr11 140058835 140059804 -8723668 - L1PA3 LINE L1 0 6155 5187 5053 35 0 0 chr11 140059804 140060439 -8723033 + L1PA3 LINE L1 4547 5181 -965 326 232 32 0 chr11 140060448 140060543 -8722929 + L1MEc LINE L1 3537 3634 -2581 275 339 79 8 chr11 140060775 140060902 -8722570 - MIR SINE MIR -108 154 19 452 255 43 21 chr11 140061565 140061706 -8721766 - MIR SINE MIR -105 157 14 38 0 0 0 chr11 140063145 140063183 -8720289 + AT_rich Low_complexity Low_complexity 1 38 0 488 289 64 32 chr11 140063886 140064135 -8719337 + L2 LINE L2 3053 3309 -4 1724 175 148 5 chr11 140064446 140064824 -8718648 - MSTB1 LTR MaLR 0 432 1 287 293 242 6 chr11 140064926 140065083 -8718389 + MIR SINE MIR 3 196 -66 186 216 0 27 chr11 140065135 140065172 -8718300 + MIR SINE MIR 211 246 -16 302 200 15 15 chr11 140066247 140066312 -8717160 + MIR SINE MIR 188 252 -10 321 374 53 26 chr11 140067556 140067746 -8715726 - MIR3 SINE MIR -11 197 3 1579 242 70 72 chr11 140068708 140069172 -8714300 - L1ME3 LINE L1 0 6162 5699 2171 122 0 0 chr11 140069172 140069467 -8714005 - AluSg SINE Alu -15 295 1 1579 242 70 72 chr11 140069467 140069753 -8713719 - L1ME3 LINE L1 -463 5699 5414 1711 97 9 0 chr11 140069753 140069979 -8713493 - AluSg/x SINE Alu -17 293 66 1798 182 4 0 chr11 140069988 140070268 -8713204 - AluJo SINE Alu -31 281 1 1579 242 70 72 chr11 140070268 140070364 -8713108 - L1ME3 LINE L1 -756 5406 5311 2444 74 0 3 chr11 140070364 140070662 -8712810 + AluY SINE Alu 2 298 -13 1579 242 70 72 chr11 140070662 140071096 -8712376 - L1ME3 LINE L1 -851 5311 4862 242 236 0 0 chr11 140071178 140071233 -8712239 - L1ME3 LINE L1 -2017 4129 4075 728 251 32 68 chr11 140071288 140071658 -8711814 - L1M4 LINE L1 -1778 4192 3836 208 178 22 0 chr11 140071880 140071925 -8711547 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 6345 199 132 57 chr11 140072339 140073913 -8709559 + L1MCa LINE L1 49 1826 -4600 186 43 0 0 chr11 140073913 140073936 -8709536 + (CAA)n Simple_repeat Simple_repeat 2 24 0 6345 199 132 57 chr11 140073936 140074495 -8708977 + L1MCa LINE L1 1826 2342 -4084 2603 253 37 31 chr11 140074475 140075399 -8708073 + L1M4 LINE L1 3875 4803 -1343 * 294 377 34 10 chr11 140076368 140076575 -8706897 - LTR16C LTR ERVL -206 285 74 1739 114 8 23 chr11 140076623 140076887 -8706585 + AluSx SINE Alu 1 260 -52 936 299 73 18 chr11 140077017 140077358 -8706114 - L1M4 LINE L1 -5523 368 9 210 118 0 0 chr11 140078916 140078950 -8704522 + (T)n Simple_repeat Simple_repeat 1 34 0 193 376 40 27 chr11 140080101 140080250 -8703222 - MIR3 SINE MIR -40 168 18 1031 279 50 15 chr11 140081870 140082585 -8700887 - L1MC/D LINE L1 -649 5710 4961 1107 140 225 52 chr11 140082585 140082949 -8700523 - MSTC LTR MaLR 0 428 2 1185 240 36 49 chr11 140082949 140083394 -8700078 - L1MC/D LINE L1 -1180 4966 4528 637 189 63 26 chr11 140083484 140083664 -8699808 + L1MB7 LINE L1 5655 5822 -340 635 240 64 37 chr11 140083649 140084165 -8699307 - L1MC/D LINE L1 -1621 4525 3884 * 521 268 13 0 chr11 140084179 140084332 -8699140 + L1MA10 LINE L1 6180 6334 0 498 214 244 0 chr11 140084429 140084597 -8698875 + HAL1b LINE L1 555 763 -585 605 132 0 0 chr11 140085014 140085128 -8698344 + Charlie5 DNA MER1_type 2396 2509 -103 6993 52 5 0 chr11 140085128 140085995 -8697477 - L1PA7 LINE L1 -11 6143 5273 12573 193 48 6 chr11 140086037 140088571 -8694901 - L1MA5 LINE L1 -1 6299 3541 204 40 0 0 chr11 140088571 140088596 -8694876 + (TG)n Simple_repeat Simple_repeat 2 26 0 12573 193 48 6 chr11 140088596 140089973 -8693499 - L1MA5 LINE L1 -2759 3541 2224 12904 136 21 10 chr11 140089973 140091053 -8692419 - Tigger1 DNA MER2_type -318 2100 983 2040 161 0 0 chr11 140091053 140091363 -8692109 - AluSx SINE Alu -2 310 1 12904 136 21 10 chr11 140091363 140092358 -8691114 - Tigger1 DNA MER2_type -1435 983 1 6267 150 66 10 chr11 140092365 140093530 -8689942 + Tigger3b DNA MER2_type 2 1231 0 214 146 18 36 chr11 140093587 140093642 -8689830 + (TATG)n Simple_repeat Simple_repeat 3 56 0 289 370 0 59 chr11 140094395 140094530 -8688942 - L2 LINE L2 -9 3263 3137 1354 142 19 86 chr11 140094557 140094824 -8688648 + AluJb SINE Alu 23 271 -41 420 20 0 0 chr11 140094831 140094880 -8688592 + (CA)n Simple_repeat Simple_repeat 2 50 0 531 261 117 30 chr11 140094938 140095168 -8688304 - MIR SINE MIR -3 259 10 1302 220 82 12 chr11 140095346 140095687 -8687785 + MLT1A1 LTR MaLR 1 365 0 1692 178 0 25 chr11 140095719 140096039 -8687433 + AluJo SINE Alu 1 312 0 210 150 0 0 chr11 140096464 140096504 -8686968 + (TAA)n Simple_repeat Simple_repeat 2 41 0 7597 30 0 0 chr11 140098824 140099951 -8683521 + L1PA4 LINE L1 5029 6155 0 264 331 69 31 chr11 140100105 140100235 -8683237 - MIR3 SINE MIR -69 139 5 616 145 17 8 chr11 140100419 140100536 -8682936 + L1PA8 LINE L1 6054 6171 -1 2065 3 0 0 chr11 140100733 140101030 -8682442 - L1PA2 LINE L1 -4 6151 5717 561 297 93 55 chr11 140101030 140101393 -8682079 - MLT1L LTR MaLR -64 533 108 2562 195 26 30 chr11 140101806 140102580 -8680892 + L1ME3A LINE L1 5174 5938 -240 22 35 0 0 chr11 140104393 140104422 -8679050 + AT_rich Low_complexity Low_complexity 1 29 0 2236 99 3 0 chr11 140104653 140104946 -8678526 - AluSp SINE Alu -19 294 1 2485 201 24 61 chr11 140105683 140106341 -8677131 - LTR27 LTR ERV1 0 636 3 248 196 31 78 chr11 140106811 140106891 -8676581 + MIR SINE MIR 49 124 -84 688 242 57 16 chr11 140107699 140107893 -8675579 - MER51D LTR ERV1 0 657 456 246 239 14 28 chr11 140108404 140108475 -8674997 + GA-rich Low_complexity Low_complexity 3 72 0 550 242 40 124 chr11 140110513 140110786 -8672686 + MIR SINE MIR 5 254 -8 646 236 55 59 chr11 140110824 140111044 -8672428 - MER20 DNA MER1_type 0 219 1 180 361 113 31 chr11 140111074 140111401 -8672071 + L2 LINE L2 2289 2642 -672 275 236 24 115 chr11 140111402 140111610 -8671862 - HAL1 LINE L1 -245 2262 2074 1959 138 0 0 chr11 140111715 140112005 -8671467 - AluSx SINE Alu -9 303 14 349 302 0 0 chr11 140112005 140112111 -8671361 - L1M4 LINE L1 -1329 4817 4712 829 313 43 34 chr11 140112123 140112538 -8670934 - LTR16B LTR ERVL -12 452 34 29 28 0 0 chr11 140112652 140112688 -8670784 + AT_rich Low_complexity Low_complexity 1 36 0 656 227 166 0 chr11 140112715 140112878 -8670594 + AluJo SINE Alu 1 190 -122 544 184 0 0 chr11 140112955 140113042 -8670430 + AluJo SINE Alu 179 265 -47 236 320 19 10 chr11 140115671 140115774 -8667698 + L1ME3A LINE L1 6055 6158 -12 543 243 32 11 chr11 140116946 140117131 -8666341 - L1MD3 LINE L1 -12 7983 7795 387 41 0 0 chr11 140117132 140117181 -8666291 + (TG)n Simple_repeat Simple_repeat 2 50 0 1887 168 0 9 chr11 140117263 140117578 -8665894 - AluJb SINE Alu 0 312 1 580 304 50 8 chr11 140117578 140117838 -8665634 - HAL1 LINE L1 -2132 375 105 32 0 0 0 chr11 140117846 140117878 -8665594 + AT_rich Low_complexity Low_complexity 1 32 0 11683 26 0 0 chr11 140117904 140120051 -8663421 - L1PA3 LINE L1 -3 6152 4006 2277 100 3 0 chr11 140120469 140120768 -8662704 - AluSc SINE Alu -9 300 1 250 367 46 13 chr11 140121452 140121689 -8661783 - LTR33A LTR ERVL 0 523 279 1247 112 61 10 chr11 140122003 140122199 -8661273 + MER30 DNA MER1_type 1 206 -24 1142 277 67 18 chr11 140122213 140122812 -8660660 - L1M4 LINE L1 -797 5349 4722 18561 29 6 1 chr11 140122812 140125940 -8657532 + L1PA3 LINE L1 3039 6185 0 661 333 34 29 chr11 140125962 140126380 -8657092 - LTR16B LTR ERVL -2 462 43 658 227 166 0 chr11 140126564 140126727 -8656745 + AluJo SINE Alu 1 190 -122 714 170 0 0 chr11 140126804 140126916 -8656556 + AluJo SINE Alu 179 290 -22 216 0 0 0 chr11 140126920 140126944 -8656528 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2121 127 7 0 chr11 140129340 140129639 -8653833 - AluSq SINE Alu -12 301 1 318 320 19 10 chr11 140129986 140130089 -8653383 + L1ME3A LINE L1 6055 6158 -12 847 206 62 48 chr11 140131253 140131525 -8651947 - L1MD2 LINE L1 -15 6344 6069 1697 164 79 0 chr11 140131525 140131805 -8651667 - AluJb SINE Alu -10 302 1 1604 147 39 0 chr11 140131847 140132159 -8651313 - L1MA7 LINE L1 -2 6289 5966 1533 152 6 115 chr11 140132160 140132509 -8650963 - AluJo SINE Alu 0 312 2 26 74 0 0 chr11 140132510 140132564 -8650908 + AT_rich Low_complexity Low_complexity 1 54 0 984 217 183 35 chr11 140132700 140132861 -8650611 - MSTD LTR MaLR 0 396 260 264 30 0 0 chr11 140132861 140132894 -8650578 + (GA)n Simple_repeat Simple_repeat 2 34 0 984 217 183 35 chr11 140132894 140133077 -8650395 - MSTD LTR MaLR -136 260 1 10678 42 48 5 chr11 140134477 140135799 -8647673 - SVA Other Other -4 1382 5 639 249 100 54 chr11 140137784 140138025 -8645447 + MIR SINE MIR 5 256 -6 339 25 0 0 chr11 140138438 140138478 -8644994 + (CA)n Simple_repeat Simple_repeat 1 40 0 624 286 30 62 chr11 140138480 140138977 -8644495 - HAL1 LINE L1 -306 2201 1721 825 163 84 0 chr11 140138991 140139169 -8644303 - L1MC2 LINE L1 -18 6326 6134 405 205 77 0 chr11 140139171 140139288 -8644184 - L1MC3 LINE L1 -200 7585 7460 286 329 30 0 chr11 140139269 140139433 -8644039 - HAL1 LINE L1 -773 1734 1566 * 1167 264 69 18 chr11 140139496 140140121 -8643351 - L1M4 LINE L1 -1550 4596 3940 1829 192 118 23 chr11 140140315 140140747 -8642725 + MER66A LTR ERV1 6 478 0 259 309 88 22 chr11 140140925 140141061 -8642411 + MIR SINE MIR 4 148 -114 1338 259 44 41 chr11 140141429 140141996 -8641476 + HAL1 LINE L1 1 569 -1938 237 200 0 0 chr11 140142002 140142052 -8641420 + HAL1 LINE L1 1605 1654 -853 490 305 121 23 chr11 140142075 140142423 -8641049 + MLT1J2 LTR MaLR 10 391 -59 638 260 69 30 chr11 140142456 140142860 -8640612 + HAL1 LINE L1 1943 2362 -145 354 107 0 0 chr11 140143323 140143379 -8640093 + (TA)n Simple_repeat Simple_repeat 2 57 0 237 279 35 0 chr11 140143445 140143531 -8639941 - L1MC4a LINE L1 -1645 6163 6075 3403 113 0 8 chr11 140143614 140144143 -8639329 - Tigger3b DNA MER2_type 0 1232 708 3291 144 23 11 chr11 140144121 140144684 -8638788 - Tigger3b DNA MER2_type -661 570 1 * 231 220 0 0 chr11 140144716 140144766 -8638706 - L1MC4a LINE L1 -1880 5928 5879 329 290 56 19 chr11 140144926 140145088 -8638384 - L1MC4a LINE L1 -1926 5882 5715 259 242 76 0 chr11 140145231 140145297 -8638175 + LTR50 LTR ERVL 48 118 -677 348 275 0 75 chr11 140145983 140146103 -8637369 + L2 LINE L2 3161 3271 -1 275 296 23 34 chr11 140146612 140146700 -8636772 - L3 LINE CR1 -46 1531 1445 291 113 0 0 chr11 140147034 140147087 -8636385 + (A)n Simple_repeat Simple_repeat 1 53 0 349 300 8 0 chr11 140147615 140147735 -8635737 + LTR33 LTR ERVL 1 121 -400 277 282 138 39 chr11 140149075 140149256 -8634216 + L2 LINE L2 2819 3017 -255 1010 114 0 0 chr11 140149801 140149950 -8633522 - L1PA10 LINE L1 -4 6164 6016 577 226 208 15 chr11 140149989 140150254 -8633218 + L1ME3 LINE L1 5751 6066 -96 251 256 60 54 chr11 140150693 140150861 -8632611 - LTR67 LTR ERVL -5 552 384 310 308 96 25 chr11 140151495 140151693 -8631779 + MIR SINE MIR 1 212 -50 250 258 61 0 chr11 140151854 140151920 -8631552 - MIR SINE MIR -98 164 95 474 237 30 0 chr11 140152020 140152155 -8631317 + HAL1 LINE L1 415 553 -1954 1779 133 19 31 chr11 140153371 140153695 -8629777 - L1MC1 LINE L1 0 6333 6014 232 191 0 0 chr11 140153819 140153861 -8629611 - MIR SINE MIR -6 256 215 1546 141 131 0 chr11 140154531 140154829 -8628643 - MER44D DNA MER2_type 0 609 3 191 256 233 0 chr11 140155426 140155512 -8627960 + MIR SINE MIR 97 202 -60 366 335 149 9 chr11 140155869 140156084 -8627388 + MIR SINE MIR 15 259 -3 251 238 12 36 chr11 140156128 140156212 -8627260 - LTR37B LTR ERV1 -54 414 333 284 223 80 36 chr11 140156280 140156392 -8627080 - LTR37B LTR ERV1 -164 304 188 2295 101 0 10 chr11 140158052 140158358 -8625114 - AluSc SINE Alu -1 308 6 753 194 29 40 chr11 140158465 140158498 -8624974 - MER5B DNA MER1_type 0 178 146 4023 85 273 0 chr11 140158498 140159146 -8624326 - LTR12 LTR ERV1 0 826 2 753 194 29 40 chr11 140159146 140159287 -8624185 - MER5B DNA MER1_type -32 146 6 2124 230 40 10 chr11 140159988 140160492 -8622980 - LTR53 LTR ERVL 0 519 1 21 36 0 0 chr11 140160566 140160594 -8622878 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr11 140161538 140161573 -8621899 + AT_rich Low_complexity Low_complexity 1 35 0 253 209 0 72 chr11 140161767 140161906 -8621566 + HAL1 LINE L1 1044 1172 -1335 338 271 51 47 chr11 140162151 140162406 -8621066 + L1MC5 LINE L1 7673 7928 -33 242 282 160 21 chr11 140162496 140162684 -8620788 - L2 LINE L2 -799 2515 2302 30 0 0 0 chr11 140162950 140162980 -8620492 + AT_rich Low_complexity Low_complexity 1 30 0 195 274 32 16 chr11 140163535 140163597 -8619875 - MIR SINE MIR -68 140 78 7601 138 30 4 chr11 140164648 140167074 -8616398 - L1MA5A LINE L1 -3 6936 4448 5955 211 36 36 chr11 140167073 140170289 -8613183 - L1MA5A LINE L1 -2672 4116 898 * 979 234 92 0 chr11 140170297 140170536 -8612936 - L1MA5A LINE L1 -6515 274 14 1435 182 71 7 chr11 140170563 140170722 -8612750 - AluJo SINE Alu -16 296 112 204 40 0 0 chr11 140170722 140170747 -8612725 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1435 182 71 7 chr11 140170747 140170856 -8612616 - AluJo SINE Alu -200 112 11 208 300 193 7 chr11 140171032 140171172 -8612300 - MIR SINE MIR -75 187 22 352 306 20 0 chr11 140171653 140171751 -8611721 + MIR SINE MIR 144 243 -19 201 200 0 0 chr11 140171951 140171986 -8611486 + L3 LINE CR1 1534 1568 -9 200 232 18 18 chr11 140172925 140172981 -8610491 + (CA)n Simple_repeat Simple_repeat 1 56 0 371 268 46 33 chr11 140173727 140173880 -8609592 - MIR SINE MIR -9 253 99 248 294 102 28 chr11 140174288 140174465 -8609007 - LTR16C LTR ERVL -3 488 299 291 287 16 47 chr11 140175468 140175597 -8607875 - MER5A DNA MER1_type -51 138 3 220 263 256 25 chr11 140176209 140176369 -8607103 + MIR SINE MIR 13 209 -53 288 318 49 30 chr11 140178500 140178648 -8604824 - MIR3 SINE MIR -38 170 10 958 171 0 0 chr11 140179093 140179251 -8604221 + AluSg/x SINE Alu 147 304 -8 662 287 51 15 chr11 140179450 140179874 -8603598 + LTR33 LTR ERVL 29 521 0 277 324 49 70 chr11 140180226 140180368 -8603104 + MIR3 SINE MIR 3 141 -67 347 337 8 0 chr11 140180433 140180571 -8602901 + MIR3 SINE MIR 38 177 -31 1317 166 73 131 chr11 140180612 140180791 -8602681 + MLT1A2 LTR MaLR 1 146 -228 411 113 0 0 chr11 140180791 140180853 -8602619 + (CA)n Simple_repeat Simple_repeat 1 62 0 1317 166 73 131 chr11 140180853 140181070 -8602402 + MLT1A2 LTR MaLR 146 374 0 288 227 45 0 chr11 140181536 140181646 -8601826 - L1ME LINE L1 -301 5820 5706 457 278 49 76 chr11 140182272 140182416 -8601056 + L2 LINE L2 3133 3272 0 1704 237 28 8 chr11 140183125 140183597 -8599875 - L1MC4 LINE L1 -720 7322 6842 501 301 127 22 chr11 140184173 140184402 -8599070 - MIR SINE MIR -2 260 8 30 27 0 0 chr11 140184814 140184851 -8598621 + AT_rich Low_complexity Low_complexity 1 37 0 252 226 32 0 chr11 140184922 140184984 -8598488 - L1ME4a LINE L1 -81 6040 5977 1020 90 0 0 chr11 140185044 140185189 -8598283 + (CA)n Simple_repeat Simple_repeat 2 146 0 770 197 0 0 chr11 140185242 140185374 -8598098 - FLAM_C SINE Alu -11 132 1 466 208 26 39 chr11 140186278 140186432 -8597040 - LTR24B LTR ERV1 -7 569 418 372 216 20 20 chr11 140186679 140186781 -8596691 - LTR24B LTR ERV1 -474 102 1 325 331 28 28 chr11 140187797 140187978 -8595494 - LTR67 LTR ERVL -4 553 373 205 182 0 0 chr11 140188313 140188346 -8595126 + L2 LINE L2 3024 3056 -257 234 0 0 0 chr11 140188569 140188595 -8594877 + (CA)n Simple_repeat Simple_repeat 1 26 0 484 283 37 74 chr11 140188666 140189126 -8594346 - L1MEd LINE L1 -5079 1040 598 545 306 56 70 chr11 140189162 140189593 -8593879 - L1MEd LINE L1 -5639 480 56 3284 72 25 0 chr11 140189624 140190057 -8593415 + MLT2A1 LTR ERVL 1 444 0 557 220 0 38 chr11 140190485 140190617 -8592855 - MER6 DNA MER2_type 0 865 739 607 257 29 37 chr11 140190747 140190950 -8592522 - MLT1G1 LTR MaLR -370 206 34 204 294 0 0 chr11 140191245 140191296 -8592176 - MIR SINE MIR -115 147 97 1236 265 63 22 chr11 140191376 140191836 -8591636 - L1ME3A LINE L1 -50 6120 5642 539 229 0 0 chr11 140191836 140191941 -8591531 + MER94 DNA DNA 15 119 -15 387 0 0 0 chr11 140192132 140192175 -8591297 + (TG)n Simple_repeat Simple_repeat 1 43 0 315 130 0 0 chr11 140195373 140195427 -8588045 + (TG)n Simple_repeat Simple_repeat 2 55 0 311 312 71 14 chr11 140196615 140196756 -8586716 + L2 LINE L2 2112 2260 -1054 526 290 106 51 chr11 140197152 140197586 -8585886 - MLT1J LTR MaLR -51 460 3 2486 180 49 8 chr11 140198203 140198691 -8584781 + MLT2B3 LTR ERVL 8 515 -39 228 133 0 22 chr11 140198730 140198775 -8584697 + MLT2B3 LTR ERVL 507 550 -4 619 168 8 25 chr11 140198872 140198991 -8584481 + MER44D DNA MER2_type 613 601 -4 593 194 8 0 chr11 140198998 140199127 -8584345 + L1MA8 LINE L1 6159 6288 -3 856 325 80 49 chr11 140199128 140199615 -8583857 + L1M4 LINE L1 2152 2623 -3523 291 54 0 0 chr11 140199615 140199652 -8583820 + (TG)n Simple_repeat Simple_repeat 2 38 0 856 325 80 49 chr11 140199652 140200419 -8583053 + L1M4 LINE L1 2623 3481 -2665 552 279 67 35 chr11 140200453 140200887 -8582585 + L1M4 LINE L1 3525 3972 -2174 2432 59 0 10 chr11 140200890 140201194 -8582278 + AluY SINE Alu 1 301 -10 25 51 0 0 chr11 140201343 140201382 -8582090 + AT_rich Low_complexity Low_complexity 1 39 0 245 325 70 9 chr11 140201712 140201826 -8581646 - MIR SINE MIR -122 140 20 309 236 189 19 chr11 140202489 140202595 -8580877 - L2 LINE L2 -1 3312 3189 198 0 0 0 chr11 140202881 140202903 -8580569 + (T)n Simple_repeat Simple_repeat 1 22 0 275 296 23 34 chr11 140203423 140203511 -8579961 + L3 LINE CR1 1445 1531 -46 348 275 0 75 chr11 140204020 140204140 -8579332 - L2 LINE L2 -1 3271 3161 259 242 76 0 chr11 140204826 140204892 -8578580 - LTR50 LTR ERVL -677 118 48 329 290 56 19 chr11 140205035 140205197 -8578275 + L1MC4a LINE L1 5715 5882 -1926 231 220 0 0 chr11 140205357 140205407 -8578065 + L1MC4a LINE L1 5879 5928 -1880 3291 144 23 11 chr11 140205439 140206002 -8577470 + Tigger3b DNA MER2_type 1 570 -661 * 3403 113 0 8 chr11 140205980 140206509 -8576963 + Tigger3b DNA MER2_type 708 1232 0 237 279 35 0 chr11 140206592 140206678 -8576794 + L1MC4a LINE L1 6075 6163 -1645 354 107 0 0 chr11 140206744 140206800 -8576672 + (TA)n Simple_repeat Simple_repeat 2 57 0 638 260 69 30 chr11 140207263 140207667 -8575805 - HAL1 LINE L1 -145 2362 1943 490 305 121 23 chr11 140207700 140208048 -8575424 - MLT1J2 LTR MaLR -59 391 10 237 200 0 0 chr11 140208071 140208121 -8575351 - HAL1 LINE L1 -853 1654 1605 1338 259 44 41 chr11 140208127 140208694 -8574778 - HAL1 LINE L1 -1938 569 1 259 309 88 22 chr11 140209062 140209198 -8574274 - MIR SINE MIR -114 148 4 1829 192 118 23 chr11 140209376 140209808 -8573664 - MER66A LTR ERV1 0 478 6 1167 264 69 18 chr11 140210002 140210627 -8572845 + L1M4 LINE L1 3940 4596 -1550 286 329 30 0 chr11 140210690 140210854 -8572618 + HAL1 LINE L1 1566 1734 -773 * 405 205 77 0 chr11 140210835 140210952 -8572520 + L1MC3 LINE L1 7460 7585 -200 825 163 84 0 chr11 140210954 140211132 -8572340 + L1MC2 LINE L1 6134 6326 -18 624 286 30 62 chr11 140211146 140211643 -8571829 + HAL1 LINE L1 1721 2201 -306 357 24 0 0 chr11 140211645 140211687 -8571785 + (TG)n Simple_repeat Simple_repeat 1 42 0 639 249 100 54 chr11 140212100 140212341 -8571131 - MIR SINE MIR -6 256 5 10601 46 48 5 chr11 140214326 140215647 -8567825 + SVA Other Other 5 1381 -5 712 214 91 63 chr11 140217047 140217230 -8566242 + MSTD LTR MaLR 1 177 -219 426 20 0 0 chr11 140217230 140217281 -8566191 + (TC)n Simple_repeat Simple_repeat 2 52 0 712 214 91 63 chr11 140217281 140217442 -8566030 + MSTD LTR MaLR 177 396 0 26 74 0 0 chr11 140217578 140217632 -8565840 + AT_rich Low_complexity Low_complexity 1 54 0 1521 155 6 115 chr11 140217633 140217982 -8565490 + AluJo SINE Alu 2 312 0 1604 147 39 0 chr11 140217983 140218295 -8565177 + L1MA7 LINE L1 5966 6289 -2 1688 165 79 0 chr11 140218337 140218616 -8564856 + AluJb SINE Alu 1 301 -11 847 206 62 48 chr11 140218616 140218888 -8564584 + L1MD2 LINE L1 6069 6344 -15 318 320 19 10 chr11 140220056 140220159 -8563313 - L1ME3A LINE L1 -12 6158 6055 2109 130 7 0 chr11 140220508 140220807 -8562665 + AluSq SINE Alu 1 301 -12 216 0 0 0 chr11 140223203 140223227 -8560245 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 714 170 0 0 chr11 140223231 140223343 -8560129 - AluJo SINE Alu -22 290 179 658 227 166 0 chr11 140223420 140223583 -8559889 - AluJo SINE Alu -122 190 1 661 333 34 29 chr11 140223767 140224185 -8559287 + LTR16B LTR ERVL 43 462 -2 351 0 0 0 chr11 140224207 140224246 -8559226 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 19281 31 6 1 chr11 140224246 140227339 -8556133 - L1PA3 LINE L1 -5 6150 3039 1121 278 69 18 chr11 140227339 140227937 -8555535 + L1M4 LINE L1 4722 5349 -797 1223 117 61 10 chr11 140227951 140228147 -8555325 - MER30 DNA MER1_type -24 206 1 235 371 46 13 chr11 140228461 140228698 -8554774 + LTR33A LTR ERVL 279 523 0 188 363 68 34 chr11 140229264 140229382 -8554090 + MIR SINE MIR 86 211 -51 2286 100 3 0 chr11 140229382 140229681 -8553791 + AluSc SINE Alu 1 300 -9 188 363 68 34 chr11 140229681 140229708 -8553764 + MIR SINE MIR 211 236 -26 11742 25 0 0 chr11 140230099 140232246 -8551226 + L1PA3 LINE L1 4006 6152 -3 32 0 0 0 chr11 140232272 140232304 -8551168 + AT_rich Low_complexity Low_complexity 1 32 0 574 318 42 4 chr11 140232312 140232573 -8550899 + HAL1 LINE L1 105 375 -2132 1855 175 0 10 chr11 140232573 140232887 -8550585 + AluJb SINE Alu 1 311 -1 333 47 0 0 chr11 140232967 140233010 -8550462 + (CA)n Simple_repeat Simple_repeat 2 44 0 543 243 32 11 chr11 140233011 140233196 -8550276 + L1MD3 LINE L1 7795 7983 -12 544 184 0 0 chr11 140237097 140237184 -8546288 - AluJo SINE Alu -47 265 179 642 233 166 0 chr11 140237261 140237424 -8546048 - AluJo SINE Alu -122 190 1 29 28 0 0 chr11 140237451 140237487 -8545985 + AT_rich Low_complexity Low_complexity 1 36 0 854 310 43 34 chr11 140237610 140238026 -8545446 + LTR16B LTR ERVL 43 462 -2 366 293 0 0 chr11 140238028 140238134 -8545338 + L1M4 LINE L1 4712 4817 -1329 1959 138 0 0 chr11 140238134 140238424 -8545048 + AluSx SINE Alu 14 303 -9 248 245 24 115 chr11 140238533 140238741 -8544731 + HAL1 LINE L1 2074 2262 -245 181 361 113 31 chr11 140238742 140239069 -8544403 - L2 LINE L2 -672 2642 2289 646 236 55 59 chr11 140239099 140239319 -8544153 + MER20 DNA MER1_type 1 219 0 550 242 40 124 chr11 140239357 140239630 -8543842 - MIR SINE MIR -8 254 5 246 239 14 28 chr11 140241668 140241739 -8541733 + CT-rich Low_complexity Low_complexity 3 72 0 688 242 57 16 chr11 140242250 140242444 -8541028 + MER51D LTR ERV1 456 657 0 259 181 31 78 chr11 140243252 140243332 -8540140 - MIR SINE MIR -84 124 49 2542 201 25 62 chr11 140243810 140244460 -8539012 + LTR27 LTR ERV1 11 636 0 2236 99 3 0 chr11 140245197 140245490 -8537982 + AluSp SINE Alu 1 294 -19 22 35 0 0 chr11 140245721 140245750 -8537722 + AT_rich Low_complexity Low_complexity 1 29 0 2562 195 26 30 chr11 140247562 140248336 -8535136 - L1MB8 LINE L1 -240 5938 5174 561 297 93 55 chr11 140248749 140249112 -8534360 + MLT1L LTR MaLR 108 533 -64 2051 13 0 0 chr11 140249112 140249468 -8534004 + L1PA2 LINE L1 5717 6210 0 285 431 0 0 chr11 140250272 140250388 -8533084 - L2 LINE L2 -20 3252 3137 367 288 58 22 chr11 140250444 140250583 -8532889 - MIR SINE MIR 0 262 119 231 220 0 0 chr11 140253273 140253332 -8530140 - L1MA4 LINE L1 -7 6293 6235 206 304 24 35 chr11 140253597 140253728 -8529744 - MIR SINE MIR -64 144 20 5267 60 0 0 chr11 140254971 140255638 -8527834 - L1PA7 LINE L1 -6 6148 5482 603 87 10 48 chr11 140255638 140255738 -8527734 + L1PA10 LINE L1 6069 6167 -1 702 278 169 6 chr11 140255738 140256159 -8527313 + L1M4c LINE L1 1450 2238 -4145 460 223 121 23 chr11 140256260 140256574 -8526898 + L1M4c LINE L1 2121 2476 -3908 2997 252 40 30 chr11 140256639 140257794 -8525678 + L1M4c LINE L1 2343 3509 -2873 701 208 27 0 chr11 140257792 140257941 -8525531 - L1 LINE L1 -2455 3515 3363 * 296 337 112 49 chr11 140257937 140258165 -8525307 - L1 LINE L1 -5206 685 170 * 722 162 7 0 chr11 140258196 140258332 -8525140 + CT-rich Low_complexity Low_complexity 3 139 0 922 294 56 42 chr11 140258355 140258760 -8524712 - L1M3de LINE L1 -5202 689 9 192 125 0 0 chr11 140260318 140260350 -8523122 + (T)n Simple_repeat Simple_repeat 1 32 0 199 384 48 14 chr11 140261501 140261647 -8521825 - MIR3 SINE MIR -40 168 18 1031 280 59 15 chr11 140263266 140263981 -8519491 - L1MC/D LINE L1 -649 5710 4961 1107 140 225 52 chr11 140263981 140264345 -8519127 - MSTC LTR MaLR 0 428 2 1167 239 36 56 chr11 140264345 140264793 -8518679 - L1MC/D LINE L1 -1180 4966 4528 637 189 63 26 chr11 140264883 140265063 -8518409 + L1MB7 LINE L1 5655 5822 -340 633 242 62 37 chr11 140265048 140265565 -8517907 - L1MC/D LINE L1 -1621 4525 3884 * 521 268 13 0 chr11 140265579 140265732 -8517740 + L1MA10 LINE L1 6180 6334 0 488 220 244 0 chr11 140265829 140265997 -8517475 + HAL1b LINE L1 555 763 -585 589 149 0 0 chr11 140266414 140266528 -8516944 + Charlie5 DNA MER1_type 2396 2509 -103 6993 52 5 0 chr11 140266528 140267395 -8516077 - L1PA7 LINE L1 -11 6143 5273 12728 194 43 7 chr11 140267437 140271375 -8512097 - L1MA5 LINE L1 -1 6299 2224 13034 133 21 10 chr11 140271375 140272455 -8511017 - Tigger1 DNA MER2_type -318 2100 984 2040 161 0 0 chr11 140272455 140272765 -8510707 - AluSx SINE Alu -2 310 1 13034 133 21 10 chr11 140272765 140273761 -8509711 - Tigger1 DNA MER2_type -1434 984 1 6186 152 69 10 chr11 140273768 140274930 -8508542 + Tigger3b DNA MER2_type 2 1231 0 214 146 18 36 chr11 140274987 140275042 -8508430 + (TATG)n Simple_repeat Simple_repeat 3 56 0 289 370 0 59 chr11 140275795 140275930 -8507542 - L2 LINE L2 -9 3263 3137 1364 142 19 86 chr11 140275957 140276224 -8507248 + AluJb SINE Alu 23 271 -41 456 19 0 0 chr11 140276231 140276284 -8507188 + (CA)n Simple_repeat Simple_repeat 2 54 0 506 265 117 30 chr11 140276342 140276572 -8506900 - MIR SINE MIR -3 259 10 1302 220 82 12 chr11 140276750 140277091 -8506381 + MLT1A1 LTR MaLR 1 365 0 1713 175 0 25 chr11 140277123 140277443 -8506029 + AluJo SINE Alu 1 312 0 210 150 0 0 chr11 140277867 140277907 -8505565 + (TAA)n Simple_repeat Simple_repeat 2 41 0 7581 29 1 0 chr11 140280227 140281353 -8502119 + L1PA4 LINE L1 5029 6155 0 264 331 69 31 chr11 140281508 140281638 -8501834 - MIR3 SINE MIR -69 139 5 596 154 17 8 chr11 140281822 140281939 -8501533 + L1PA8 LINE L1 6054 6171 -1 3689 9 0 12 chr11 140282136 140282566 -8500906 - L1PA2 LINE L1 -3 6152 5728 34 0 0 0 chr11 140282807 140282841 -8500631 + AT_rich Low_complexity Low_complexity 1 34 0 2118 108 41 0 chr11 140284123 140284418 -8499054 - AluSg SINE Alu -3 307 1 26 98 0 0 chr11 140284831 140284913 -8498559 + AT_rich Low_complexity Low_complexity 1 82 0 301 194 224 45 chr11 140285257 140285391 -8498081 + MLT1J1 LTR MaLR 1 158 -288 309 265 26 73 chr11 140285520 140285671 -8497801 + L1ME3A LINE L1 6012 6155 -15 709 290 75 22 chr11 140286039 140286543 -8496929 - L1M4 LINE L1 -2720 3426 2896 3237 208 51 25 chr11 140286576 140287765 -8495707 - L1MB8 LINE L1 -6 6172 4832 1244 132 0 0 chr11 140287878 140288052 -8495420 - AluSg/x SINE Alu -8 304 131 641 172 28 28 chr11 140288805 140288950 -8494522 - L1MA9 LINE L1 -309 6003 5859 1113 160 5 11 chr11 140289361 140289548 -8493924 - MER46A DNA MER2_type 0 236 51 2061 209 12 12 chr11 140289549 140290060 -8493412 - L1 LINE L1 -2940 3206 2696 4246 102 9 12 chr11 140290060 140290513 -8492959 + L1PB1 LINE L1 5508 5968 -183 3858 75 68 4 chr11 140290513 140291058 -8492414 - LTR19B LTR ERV1 0 580 1 4246 102 9 12 chr11 140291058 140291242 -8492230 + L1PB1 LINE L1 5968 6151 0 307 222 0 0 chr11 140291258 140291321 -8492151 - MER46A DNA MER2_type -173 63 1 421 198 0 0 chr11 140291462 140291543 -8491929 - L1P LINE L1 -3229 2917 2837 904 115 34 7 chr11 140291543 140291688 -8491784 + L1PA14 LINE L1 6007 6158 -3 603 320 68 17 chr11 140291908 140292202 -8491270 - MLT1L LTR MaLR -2 613 305 228 67 0 0 chr11 140293035 140293065 -8490407 + (T)n Simple_repeat Simple_repeat 1 30 0 2585 71 17 0 chr11 140293779 140294133 -8489339 + L1PA8 LINE L1 5813 6172 0 258 388 30 15 chr11 140294639 140294773 -8488699 - MIR3 SINE MIR -69 139 4 627 111 25 0 chr11 140295299 140295414 -8488058 - LTR54 LTR ERV1 0 510 369 235 157 325 0 chr11 140295505 140295588 -8487884 + MLT1J1 LTR MaLR 1 110 -336 327 194 30 0 chr11 140295774 140295841 -8487631 + L1ME3A LINE L1 6005 6073 -97 943 83 42 7 chr11 140296213 140296357 -8487115 + L1PA8 LINE L1 6010 6158 -14 1522 131 41 24 chr11 140296603 140296894 -8486578 + LTR60 LTR ERV1 291 586 0 540 155 0 0 chr11 140299543 140299627 -8483845 - AluJ/FLAM SINE Alu -217 95 12 433 353 142 29 chr11 140299640 140300048 -8483424 + L3 LINE CR1 717 1170 -407 545 297 33 33 chr11 140300077 140300289 -8483183 - L2 LINE L2 -2 3311 3100 390 347 19 56 chr11 140300400 140300613 -8482859 + L3 LINE CR1 1369 1573 -4 5350 145 32 78 chr11 140300766 140301224 -8482248 + L1M1 LINE L1 4124 4602 -1609 333 0 0 0 chr11 140301224 140301261 -8482211 + (CA)n Simple_repeat Simple_repeat 2 38 0 5350 145 32 78 chr11 140301261 140302224 -8481248 + L1M1 LINE L1 4602 5468 -743 2136 107 30 0 chr11 140302224 140302523 -8480949 - AluSx SINE Alu -4 308 1 249 360 64 32 chr11 140302583 140302708 -8480764 - MIR3 SINE MIR -66 142 14 187 363 35 9 chr11 140302818 140302931 -8480541 - MIR3 SINE MIR -10 198 83 200 59 29 0 chr11 140302953 140302987 -8480485 + (TA)n Simple_repeat Simple_repeat 1 35 0 2101 120 21 0 chr11 140303641 140303932 -8479540 - AluSx SINE Alu -15 297 1 2027 160 0 0 chr11 140305155 140305634 -8477838 - AluSx SINE Alu 0 479 1 2166 109 0 0 chr11 140305736 140306019 -8477453 + AluSx SINE Alu 29 311 -1 225 333 67 0 chr11 140306454 140306529 -8476943 - MIR SINE MIR -63 145 66 284 282 12 0 chr11 140306620 140306705 -8476767 + MER103 DNA DNA 3 88 -78 401 48 48 0 chr11 140309122 140309184 -8474288 + (GAAAA)n Simple_repeat Simple_repeat 1 65 0 194 0 0 37 chr11 140310569 140310596 -8472876 + (TTTTTA)n Simple_repeat Simple_repeat 2 27 0 32 43 0 0 chr11 140312104 140312150 -8471322 + AT_rich Low_complexity Low_complexity 1 46 0 532 285 50 14 chr11 140312844 140313065 -8470407 - L1ME3 LINE L1 -14 6148 5920 366 292 94 5 chr11 140313062 140313265 -8470207 - L1ME2 LINE L1 -136 6030 5828 * 321 282 24 8 chr11 140313393 140313517 -8469955 + L1ME2 LINE L1 4881 5006 -1140 242 202 40 40 chr11 140313579 140313678 -8469794 + L1ME2 LINE L1 5124 5222 -924 888 275 19 16 chr11 140313814 140314389 -8469083 + L1ME2 LINE L1 5370 6052 -112 511 272 113 8 chr11 140314403 140314658 -8468814 - MER58B DNA MER1_type -16 325 10 399 238 10 0 chr11 140314666 140314767 -8468705 + L1ME2 LINE L1 6046 6147 -17 277 265 27 41 chr11 140314952 140315099 -8468373 + L1M LINE L1 5257 5401 -2407 486 204 121 15 chr11 140315146 140315278 -8468194 + THE1C LTR MaLR 3 148 -227 306 360 90 9 chr11 140365480 140365691 -8417781 + MIR SINE MIR 35 262 0 1200 121 121 62 chr11 140365710 140366000 -8417472 + pTR5 LTR ERV1 1719 2025 -413 278 224 41 31 chr11 140366000 140366098 -8417374 + LTR30 LTR ERV1 544 642 -80 1377 107 49 4 chr11 140366099 140366324 -8417148 + LTR12 LTR ERV1 480 714 0 258 341 11 0 chr11 140366324 140366415 -8417057 + MIR SINE MIR 166 257 -5 1242 223 65 41 chr11 140366989 140367455 -8416017 + MLT2B1 LTR ERVL 1 548 -6 501 329 50 23 chr11 140367474 140367693 -8415779 - MIR SINE MIR -27 235 11 2713 131 4 85 chr11 140367758 140367887 -8415585 - L1PA13 LINE L1 0 6163 6025 3071 105 26 32 chr11 140367887 140368382 -8415090 + LTR22B LTR ERVK 1 492 0 2713 131 4 85 chr11 140368382 140368795 -8414677 - L1PA13 LINE L1 -138 6025 5665 6200 174 6 2 chr11 140368796 140369985 -8413487 + L1P4 LINE L1 3983 5176 -970 204 40 0 0 chr11 140369985 140370010 -8413462 + (TA)n Simple_repeat Simple_repeat 2 26 0 346 226 0 49 chr11 140370022 140370124 -8413348 + L1MC4 LINE L1 6607 6703 -1339 217 281 0 0 chr11 140370125 140370165 -8413307 + (TATATG)n Simple_repeat Simple_repeat 6 48 -14 189 0 0 0 chr11 140370165 140370186 -8413286 + (TC)n Simple_repeat Simple_repeat 2 22 0 217 281 0 0 chr11 140370186 140370202 -8413270 + (TATATG)n Simple_repeat Simple_repeat 47 62 0 288 0 0 0 chr11 140370209 140370241 -8413231 + (TA)n Simple_repeat Simple_repeat 1 32 0 2602 117 29 0 chr11 140370250 140370736 -8412736 + L1P4 LINE L1 5185 5682 -479 25 51 0 0 chr11 140370752 140370791 -8412681 + AT_rich Low_complexity Low_complexity 1 39 0 235 327 50 10 chr11 140371335 140371436 -8412036 - L2 LINE L2 -222 3050 2946 2466 60 0 0 chr11 140371451 140371751 -8411721 + AluY SINE Alu 1 300 -11 24 77 0 0 chr11 140371852 140371904 -8411568 + AT_rich Low_complexity Low_complexity 1 52 0 1880 145 9 3 chr11 140372379 140372710 -8410762 + L1MA5 LINE L1 5968 6300 0 33 43 0 0 chr11 140373056 140373103 -8410369 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr11 140373173 140373195 -8410277 + AT_rich Low_complexity Low_complexity 1 22 0 2171 123 3 0 chr11 140375439 140375739 -8407733 - AluSx SINE Alu -11 301 1 1063 171 137 81 chr11 140376093 140376450 -8407022 - L1MB5 LINE L1 0 6174 5798 216 111 0 0 chr11 140376641 140376677 -8406795 + (TC)n Simple_repeat Simple_repeat 1 36 0 425 286 65 42 chr11 140376697 140376865 -8406607 + MIR SINE MIR 20 191 -71 299 300 42 51 chr11 140378257 140378396 -8405076 + MIR SINE MIR 16 151 -65 1326 151 4 0 chr11 140378502 140378727 -8404745 - L1PB1 LINE L1 0 6151 5926 22 0 0 0 chr11 140378795 140378817 -8404655 + AT_rich Low_complexity Low_complexity 1 22 0 392 297 38 40 chr11 140379141 140379154 -8404318 - MIR SINE MIR 0 262 250 396 40 0 0 chr11 140379154 140379204 -8404268 + (CA)n Simple_repeat Simple_repeat 2 51 0 392 297 38 40 chr11 140379204 140379421 -8404051 - MIR SINE MIR -12 250 31 317 282 224 13 chr11 140380958 140381114 -8402358 - MIR SINE MIR -72 190 2 564 344 82 15 chr11 140381138 140381481 -8401991 + L3 LINE CR1 1211 1576 -1 306 360 90 9 chr11 140381779 140381990 -8401482 - MIR SINE MIR 0 262 35 267 306 159 6 chr11 140382089 140382246 -8401226 - MIR SINE MIR -46 216 36 1967 134 3 0 chr11 140382434 140382717 -8400755 + AluSx SINE Alu 1 284 -28 200 260 0 20 chr11 140383209 140383259 -8400213 + CT-rich Low_complexity Low_complexity 4 52 0 590 198 121 44 chr11 140384286 140384559 -8398913 + L1M1 LINE L1 3316 3609 -3956 30 27 0 0 chr11 140384808 140384845 -8398627 + AT_rich Low_complexity Low_complexity 1 37 0 378 279 58 11 chr11 140385235 140385299 -8398173 + L1MCb LINE L1 1 61 -5984 2021 137 129 5 chr11 140385299 140385680 -8397792 + MSTA LTR MaLR 1 428 0 378 279 58 11 chr11 140385680 140385805 -8397667 + L1MCb LINE L1 61 199 -5846 203 162 0 0 chr11 140385844 140385881 -8397591 + A-rich Low_complexity Low_complexity 2 38 0 1999 274 47 48 chr11 140385898 140386372 -8397100 + L1MCb LINE L1 1457 1930 -4634 2255 110 0 0 chr11 140386372 140386662 -8396810 + AluY SINE Alu 1 290 -21 267 31 0 0 chr11 140386665 140386697 -8396775 + (CA)n Simple_repeat Simple_repeat 2 33 0 1999 274 47 48 chr11 140386697 140387704 -8395768 + L1MCb LINE L1 1932 2920 -3644 220 238 180 49 chr11 140388601 140388723 -8394749 - MER5A DNA MER1_type -6 183 46 394 307 10 0 chr11 140388916 140389017 -8394455 - MIR3 SINE MIR -49 159 58 257 339 24 55 chr11 140391425 140391552 -8391920 - MIR SINE MIR -65 143 21 773 322 191 32 chr11 140391581 140392537 -8390935 - L3 LINE CR1 -214 1363 256 1213 144 42 81 chr11 140392537 140392871 -8390601 - MER33 DNA MER1_type 0 324 4 734 319 13 9 chr11 140393179 140393408 -8390064 + MIR SINE MIR 28 257 -5 411 351 129 36 chr11 140394744 140395350 -8388122 + L2 LINE L2 158 819 -2495 651 244 0 0 chr11 140395385 140395508 -8387964 + FLAM_C SINE Alu 2 124 -9 1389 195 4 23 chr11 140395545 140395801 -8387671 + AluJo SINE Alu 43 293 -19 8421 158 40 10 chr11 140395983 140397013 -8386459 + L1MA8 LINE L1 3644 4641 -1537 300 27 0 0 chr11 140397013 140397050 -8386422 + (CA)n Simple_repeat Simple_repeat 2 38 0 8421 158 40 10 chr11 140397050 140398196 -8385276 + L1MA8 LINE L1 4641 5882 -296 1486 143 0 9 chr11 140398196 140398413 -8385059 + AluJb SINE Alu 86 300 -12 8421 158 40 10 chr11 140398413 140398707 -8384765 + L1MA8 LINE L1 5882 6166 -12 762 84 0 0 chr11 140399473 140399580 -8383892 + (GGAA)n Simple_repeat Simple_repeat 4 110 0 2833 10 0 0 chr11 140400442 140400752 -8382720 + AluYa5 SINE Alu 1 310 -1 2048 152 0 0 chr11 140402169 140402471 -8381001 + AluSx SINE Alu 1 302 -10 671 109 99 0 chr11 140404061 140404162 -8379310 + FLAM_C SINE Alu 1 111 -32 333 0 37 37 chr11 140404163 140404217 -8379255 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 556 360 138 18 chr11 140404732 140405354 -8378118 + L3 LINE CR1 876 1572 -5 296 325 0 0 chr11 140405382 140405465 -8378007 + MIR SINE MIR 40 122 -86 229 273 55 0 chr11 140406179 140406234 -8377238 + L2 LINE L2 3210 3267 -5 3843 162 49 119 chr11 140408260 140409598 -8373874 + MER52A LTR ERV1 58 1630 -64 237 324 96 15 chr11 140411499 140411635 -8371837 - MIR SINE MIR -44 218 72 208 296 0 0 chr11 140411980 140412034 -8371438 - L2 LINE L2 0 3272 3219 2076 113 18 0 chr11 140412399 140412683 -8370789 + AluSc SINE Alu 1 289 -20 355 315 37 19 chr11 140412694 140412856 -8370616 - MIR SINE MIR -13 249 85 4473 196 30 6 chr11 140413671 140414623 -8368849 + L1M4 LINE L1 2 976 -6589 770 246 77 9 chr11 140415454 140415468 -8368004 + L1M4 LINE L1 4199 4211 -3354 2217 165 37 18 chr11 140415468 140415922 -8367550 - L1MA10 LINE L1 -2 6332 5870 770 246 77 9 chr11 140415922 140416362 -8367110 + L1M4 LINE L1 4211 4684 -2881 763 186 5 63 chr11 140416360 140416581 -8366891 + L1MC3 LINE L1 7571 7778 -7 * 3831 101 61 32 chr11 140416992 140417571 -8365901 - LTR1 LTR ERV1 -1 784 180 2013 109 7 7 chr11 140417571 140417865 -8365607 - AluSc SINE Alu -15 294 1 3831 101 61 32 chr11 140417865 140417977 -8365495 - LTR1 LTR ERV1 -605 180 73 776 147 47 12 chr11 140418003 140418173 -8365299 + L1MA10 LINE L1 6148 6323 -11 25 0 0 0 chr11 140418693 140418718 -8364754 + AT_rich Low_complexity Low_complexity 1 25 0 515 147 0 35 chr11 140418842 140418958 -8364514 + LTR1 LTR ERV1 1 112 -673 * 836 136 69 18 chr11 140418933 140419131 -8364341 + Tigger7 DNA MER2_type 2250 2435 -56 1523 222 139 68 chr11 140419142 140419996 -8363476 - LTR1B LTR ERV1 -9 1011 2 343 186 0 0 chr11 140419997 140420056 -8363416 + Tigger7 DNA MER2_type 2428 2486 -1 2623 150 16 14 chr11 140420057 140420638 -8362834 + L1MA9 LINE L1 5669 6312 0 1121 175 133 28 chr11 140420641 140421001 -8362471 + L1MA9 LINE L1 5878 6275 -37 592 290 70 4 chr11 140421109 140421368 -8362104 + L1M4 LINE L1 4797 5072 -1074 21 0 0 0 chr11 140421801 140421822 -8361650 + AT_rich Low_complexity Low_complexity 1 21 0 30 59 0 0 chr11 140422339 140422390 -8361082 + AT_rich Low_complexity Low_complexity 1 51 0 223 391 59 39 chr11 140422639 140422895 -8360577 - L2 LINE L2 -346 2968 2708 245 407 26 21 chr11 140424191 140424380 -8359092 - L2 LINE L2 -188 3084 2895 2496 77 21 45 chr11 140425185 140425562 -8357910 - L1PB1 LINE L1 -1 6150 5783 38 0 0 0 chr11 140425682 140425720 -8357752 + AT_rich Low_complexity Low_complexity 1 38 0 246 62 0 0 chr11 140425777 140425809 -8357663 + (TG)n Simple_repeat Simple_repeat 2 33 0 192 366 0 0 chr11 140425854 140425936 -8357536 - MIR SINE MIR -61 201 120 578 216 138 82 chr11 140427559 140427582 -8355890 + MIR SINE MIR 18 38 -224 3596 118 36 2 chr11 140427582 140428141 -8355331 - LTR19B LTR ERV1 0 580 3 578 216 138 82 chr11 140428141 140428348 -8355124 + MIR SINE MIR 38 261 -1 198 382 108 10 chr11 140428392 140428494 -8354978 + L2 LINE L2 3153 3264 -8 258 105 0 0 chr11 140428576 140428614 -8354858 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 352 270 52 0 chr11 140430573 140430688 -8352784 + MIR SINE MIR 128 248 -14 21 36 0 0 chr11 140431153 140431181 -8352291 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr11 140431838 140431865 -8351607 + AT_rich Low_complexity Low_complexity 1 27 0 191 320 129 54 chr11 140433711 140433858 -8349614 - MIR SINE MIR -45 217 60 223 323 188 0 chr11 140434082 140434178 -8349294 + L2 LINE L2 3195 3308 -5 582 116 12 0 chr11 140434908 140434994 -8348478 + MSTA LTR MaLR 342 428 0 513 182 0 0 chr11 140435003 140435102 -8348370 + GA-rich Low_complexity Low_complexity 1 99 0 815 170 78 156 chr11 140435719 140436142 -8347330 + MLT1B LTR MaLR 1 390 0 471 256 127 32 chr11 140436469 140436785 -8346687 + L1ME LINE L1 3121 3466 -2680 1173 235 133 76 chr11 140436785 140437287 -8346185 - MLT1F LTR MaLR 0 542 12 523 300 71 37 chr11 140437296 140437982 -8345490 + L1ME LINE L1 4882 5597 -565 42 68 0 26 chr11 140438436 140438553 -8344919 + AT_rich Low_complexity Low_complexity 1 114 0 25 0 0 0 chr11 140438593 140438618 -8344854 + AT_rich Low_complexity Low_complexity 1 25 0 287 342 173 15 chr11 140439484 140439826 -8343646 - L3 LINE CR1 -124 1453 1058 272 122 20 0 chr11 140439838 140439887 -8343585 + L2 LINE L2 3264 3313 0 261 170 0 0 chr11 140441448 140441501 -8341971 + (TA)n Simple_repeat Simple_repeat 2 54 0 234 91 0 0 chr11 140441514 140441547 -8341925 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 272 373 22 22 chr11 140442274 140442459 -8341013 + MIR SINE MIR 19 203 -59 22 0 0 0 chr11 140442509 140442531 -8340941 + AT_rich Low_complexity Low_complexity 1 22 0 2108 227 42 4 chr11 140442587 140443128 -8340344 - L1MB7 LINE L1 -9 6175 5614 28 0 0 0 chr11 140443373 140443401 -8340071 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr11 140443547 140443585 -8339887 + AT_rich Low_complexity Low_complexity 1 38 0 258 176 59 20 chr11 140444495 140444597 -8338875 + (TATAA)n Simple_repeat Simple_repeat 5 110 0 184 293 103 0 chr11 140444922 140444980 -8338492 + L2 LINE L2 3205 3268 -4 221 196 71 0 chr11 140445096 140445152 -8338320 + MIR3 SINE MIR 125 184 -24 24 0 0 0 chr11 140445162 140445186 -8338286 + AT_rich Low_complexity Low_complexity 1 24 0 251 183 17 17 chr11 140446595 140446655 -8336817 + L1MCa LINE L1 41 100 -6326 699 59 20 0 chr11 140446656 140446757 -8336715 + MSTA LTR MaLR 1 103 -325 25 0 0 0 chr11 140446857 140446882 -8336590 + GC_rich Low_complexity Low_complexity 1 25 0 240 35 0 0 chr11 140446903 140446932 -8336540 + (A)n Simple_repeat Simple_repeat 1 29 0 445 343 50 4 chr11 140447646 140447877 -8335595 - MIR SINE MIR -2 260 18 313 112 371 22 chr11 140448437 140448526 -8334946 + FLAM_C SINE Alu 1 120 -13 21 0 0 0 chr11 140448595 140448616 -8334856 + AT_rich Low_complexity Low_complexity 1 21 0 486 341 51 9 chr11 140448617 140448834 -8334638 - MIR SINE MIR 0 262 37 2279 257 103 51 chr11 140449403 140450965 -8332507 + L1M4 LINE L1 2838 4481 -1665 1268 234 27 4 chr11 140450976 140451237 -8332235 + Tigger7 DNA MER2_type 1 267 -2220 745 167 22 14 chr11 140451243 140451381 -8332091 + Tigger7 DNA MER2_type 2352 2490 -1 454 321 47 10 chr11 140451389 140451656 -8331816 + L1MC4a LINE L1 6443 6809 -1104 20166 90 15 2 chr11 140451694 140454579 -8328893 + L1P LINE L1 2373 5296 -850 545 192 119 51 chr11 140454728 140454905 -8328567 - MER52A LTR ERV1 -125 1630 1442 1764 254 21 32 chr11 140459995 140460555 -8322917 - L1ME1 LINE L1 -5 6161 5608 * 4174 192 18 7 chr11 140460551 140461375 -8322097 - L1P LINE L1 -1935 4211 3379 953 125 0 13 chr11 140461375 140461527 -8321945 - AluYa5 SINE Alu -1 310 161 1230 289 12 10 chr11 140461532 140462037 -8321435 - L1P LINE L1 -3331 2815 2310 207 0 0 0 chr11 140462037 140462060 -8321412 + (T)n Simple_repeat Simple_repeat 1 23 0 21508 73 4 13 chr11 140462235 140465228 -8318244 + L1P LINE L1 2298 5265 -881 6006 93 20 0 chr11 140465328 140466189 -8317283 - HERVH LTR ERV1 -6043 1670 793 3023 105 4 21 chr11 140466243 140466710 -8316762 - HERVH LTR ERV1 -7254 459 1 2336 92 128 8 chr11 140466712 140467112 -8316360 - LTR7 LTR ERV1 -2 448 1 288 289 13 81 chr11 140467883 140468032 -8315440 - MIR SINE MIR -10 252 114 531 133 296 0 chr11 140468039 140468137 -8315335 + MER41C LTR ERV1 281 407 -147 215 293 40 0 chr11 140468151 140468226 -8315246 - L3 LINE CR1 -166 1411 1334 244 226 0 65 chr11 140468306 140468368 -8315104 - MIR SINE MIR -2 260 203 2627 86 9 0 chr11 140468674 140469022 -8314450 + MER4E LTR ERV1 1 351 -428 2091 90 57 13 chr11 140469032 140469332 -8314140 - THE1B LTR MaLR -51 313 1 399 278 172 20 chr11 140469643 140469794 -8313678 - MER5A DNA MER1_type -7 182 9 1097 281 40 62 chr11 140469808 140470260 -8313212 - MLT1J LTR MaLR -69 442 1 201 305 146 30 chr11 140470327 140470491 -8312981 - MIR SINE MIR 0 262 80 7050 55 17 2 chr11 140470578 140471854 -8311618 - L1PA7 LINE L1 -1 6153 4869 4562 93 15 1 chr11 140471956 140472641 -8310831 - L1P LINE L1 -1200 4946 4253 2692 134 23 18 chr11 140472641 140473075 -8310397 + MER4E LTR ERV1 340 775 -4 245 282 84 14 chr11 140473112 140473183 -8310289 - MIR SINE MIR -151 111 36 4983 162 35 13 chr11 140474836 140474882 -8308590 - Tigger2 DNA MER2_type -1795 923 879 1968 148 0 7 chr11 140474882 140475186 -8308286 - AluSq SINE Alu -6 307 6 4983 162 35 13 chr11 140475186 140476042 -8307430 - Tigger2 DNA MER2_type -1839 879 1 5438 216 108 33 chr11 140476048 140477300 -8306172 + L1MC1 LINE L1 3030 4186 -2147 479 83 0 28 chr11 140477300 140477372 -8306100 - MADE1 DNA Mariner -6 74 5 5438 216 108 33 chr11 140477372 140478681 -8304791 + L1MC1 LINE L1 4186 5855 -478 25 31 0 0 chr11 140479151 140479183 -8304289 + AT_rich Low_complexity Low_complexity 1 32 0 237 65 0 0 chr11 140480457 140480488 -8302984 + (A)n Simple_repeat Simple_repeat 1 31 0 415 258 350 0 chr11 140482739 140482902 -8300570 + MIR SINE MIR 16 235 -27 686 269 56 30 chr11 140482934 140483168 -8300304 - LTR16A LTR ERVL -9 441 202 306 275 0 0 chr11 140483942 140484011 -8299461 - L2 LINE L2 -1385 1929 1861 245 196 39 0 chr11 140484124 140484175 -8299297 - L1MC5 LINE L1 -67 7894 7842 379 306 143 53 chr11 140484293 140484724 -8298748 - L1 LINE L1 -2889 3257 2768 2020 139 0 0 chr11 140484724 140485034 -8298438 + AluSx SINE Alu 2 311 0 379 306 143 53 chr11 140485034 140485124 -8298348 - L1 LINE L1 -3378 2768 2688 285 328 89 38 chr11 140485300 140485849 -8297623 - L1M4 LINE L1 -1779 4367 3791 27 29 0 0 chr11 140486173 140486207 -8297265 + AT_rich Low_complexity Low_complexity 1 34 0 3178 235 25 26 chr11 140486317 140487191 -8296281 - L1ME1 LINE L1 -5 6161 5289 242 122 0 41 chr11 140487312 140487361 -8296111 + (TATG)n Simple_repeat Simple_repeat 4 50 0 333 309 40 6 chr11 140488563 140488738 -8294734 + L1M4 LINE L1 5217 5397 -749 2452 97 0 0 chr11 140488833 140489141 -8294331 + AluSc SINE Alu 1 308 -1 247 353 93 13 chr11 140489439 140489589 -8293883 + MIR3 SINE MIR 46 207 -1 209 394 141 0 chr11 140489905 140490004 -8293468 + L2 LINE L2 3116 3228 -44 24 0 0 0 chr11 140490871 140490895 -8292577 + AT_rich Low_complexity Low_complexity 1 24 0 834 199 0 70 chr11 140490943 140491129 -8292343 + FAM SINE Alu 1 173 -2 2738 169 41 5 chr11 140491438 140492316 -8291156 + L1MC/D LINE L1 4784 5693 -643 3203 148 29 55 chr11 140492848 140492993 -8290479 + L1MA5 LINE L1 5632 5779 -521 219 69 0 0 chr11 140492993 140493022 -8290450 + (TA)n Simple_repeat Simple_repeat 2 30 0 3203 148 29 55 chr11 140493022 140493563 -8289909 + L1MA5 LINE L1 5779 6300 0 197 346 0 37 chr11 140493570 140493651 -8289821 - MIR SINE MIR -73 135 58 1955 164 0 35 chr11 140494205 140494552 -8288920 + MER7A DNA MER2_type 14 346 0 290 290 36 36 chr11 140495071 140495209 -8288263 + MER5A DNA MER1_type 48 185 -4 299 392 39 15 chr11 140495656 140495860 -8287612 + MIR SINE MIR 24 232 -30 306 164 0 0 chr11 140495886 140495941 -8287531 + (TG)n Simple_repeat Simple_repeat 2 56 0 233 306 181 7 chr11 140498913 140499057 -8284415 - MIR SINE MIR -11 251 83 627 154 169 18 chr11 140499193 140499359 -8284113 + MER33 DNA MER1_type 1 183 -101 1748 167 33 12 chr11 140499384 140499714 -8283758 - MER2 DNA MER2_type 0 345 9 392 260 8 8 chr11 140499719 140499846 -8283626 + MER33 DNA MER1_type 198 324 0 415 239 15 8 chr11 140500486 140500592 -8282880 - MER5A DNA MER1_type -80 109 3 2644 108 54 3 chr11 140502128 140502515 -8280957 + MER83 LTR ERV1 1 407 -41 2148 116 7 7 chr11 140503872 140504175 -8279297 + AluSq SINE Alu 3 305 -8 22 0 0 0 chr11 140504277 140504299 -8279173 + AT_rich Low_complexity Low_complexity 1 22 0 622 290 116 88 chr11 140504889 140505686 -8277786 - L2 LINE L2 0 3313 2481 25 51 0 0 chr11 140505690 140505729 -8277743 + AT_rich Low_complexity Low_complexity 1 39 0 15449 152 31 15 chr11 140506626 140514125 -8269347 + L1MA2 LINE L1 16 7723 0 35 0 0 0 chr11 140514221 140514256 -8269216 + AT_rich Low_complexity Low_complexity 1 35 0 604 322 71 26 chr11 140514511 140514974 -8268498 + L1ME3A LINE L1 35 518 -5878 233 280 91 14 chr11 140515302 140515445 -8268027 + L1ME3A LINE L1 3704 3857 -2358 1559 115 46 8 chr11 140515535 140515795 -8267677 - L1PB1 LINE L1 0 6151 5882 753 200 0 15 chr11 140516238 140516373 -8267099 - FLAM_C SINE Alu 0 133 1 198 0 0 0 chr11 140516385 140516407 -8267065 + (T)n Simple_repeat Simple_repeat 1 22 0 7056 54 10 1 chr11 140516793 140518014 -8265458 + L1PA7 LINE L1 4904 6133 -21 574 268 126 28 chr11 140518017 140518280 -8265192 + L1MC4 LINE L1 7694 7995 -47 2133 111 3 7 chr11 140518280 140518577 -8264895 - AluSg SINE Alu -14 296 1 574 268 126 28 chr11 140518577 140518630 -8264842 + L1MC4 LINE L1 7995 8041 -1 1447 269 76 45 chr11 140518650 140519472 -8264000 + L1ME3A LINE L1 4548 5344 -895 2242 84 0 3 chr11 140519472 140519771 -8263701 + AluY SINE Alu 1 298 -13 1447 269 76 45 chr11 140519771 140520464 -8263008 + L1ME3A LINE L1 5344 6231 -8 196 322 46 0 chr11 140523211 140523298 -8260174 + MIR SINE MIR 168 258 -4 188 281 18 18 chr11 140523313 140523370 -8260102 + MIR SINE MIR 90 146 -62 195 246 59 93 chr11 140523381 140523461 -8260011 + MIR SINE MIR 104 180 -82 1571 101 41 0 chr11 140523461 140523680 -8259792 + MER30 DNA MER1_type 3 230 0 195 246 59 93 chr11 140523680 140523717 -8259755 + MIR SINE MIR 180 217 -45 55 29 0 0 chr11 140523756 140523825 -8259647 + AT_rich Low_complexity Low_complexity 1 69 0 620 168 40 0 chr11 140524914 140525039 -8258433 + L1MB3 LINE L1 6041 6170 -13 312 287 124 26 chr11 140525247 140525554 -8257918 - L1ME4a LINE L1 -227 5894 5558 305 325 131 0 chr11 140525598 140525758 -8257714 - L1ME4a LINE L1 -2314 5494 5314 191 325 12 48 chr11 140527399 140527482 -8255990 - L2 LINE L2 -5 3267 3188 330 276 157 0 chr11 140527882 140528016 -8255456 + MIR SINE MIR 99 253 -9 22 0 0 0 chr11 140528234 140528256 -8255216 + AT_rich Low_complexity Low_complexity 1 22 0 232 196 0 20 chr11 140529272 140529323 -8254149 + GA-rich Low_complexity Low_complexity 2 51 0 205 197 91 15 chr11 140530437 140530503 -8252969 + MIR SINE MIR 123 193 -69 328 276 35 0 chr11 140530532 140530619 -8252853 - L1MC4 LINE L1 -1339 6703 6614 287 302 12 0 chr11 140530625 140530711 -8252761 + (TA)n Simple_repeat Simple_repeat 2 88 0 854 260 96 60 chr11 140531133 140531548 -8251924 + MLT1J LTR MaLR 13 442 -69 436 326 110 0 chr11 140532785 140533003 -8250469 + MIR SINE MIR 15 256 -6 435 311 62 16 chr11 140533399 140533592 -8249880 - MIR SINE MIR -56 206 5 32 57 0 0 chr11 140534801 140534854 -8248618 + AT_rich Low_complexity Low_complexity 1 53 0 329 207 35 23 chr11 140535095 140535182 -8248290 - MER94 DNA DNA -29 105 18 268 279 51 0 chr11 140535244 140535323 -8248149 - MIR SINE MIR -74 134 52 32 0 0 0 chr11 140535533 140535565 -8247907 + AT_rich Low_complexity Low_complexity 1 32 0 307 353 137 15 chr11 140536036 140536240 -8247232 - MIR SINE MIR -5 257 29 196 239 22 0 chr11 140536332 140536378 -8247094 - MIR SINE MIR -64 198 152 268 326 70 12 chr11 140537456 140537542 -8245930 - L2 LINE L2 -29 3243 3153 253 281 123 53 chr11 140537575 140537689 -8245783 - L2 LINE L2 0 3272 3151 872 172 43 43 chr11 140538028 140538261 -8245211 + L1MB1 LINE L1 5935 6167 -1 21 36 0 0 chr11 140538261 140538289 -8245183 + AT_rich Low_complexity Low_complexity 1 28 0 420 305 110 35 chr11 140540309 140540509 -8242963 - MIR SINE MIR 0 262 48 1098 218 70 30 chr11 140540695 140541026 -8242446 - MER2 DNA MER2_type 0 344 1 202 376 40 20 chr11 140541067 140541216 -8242256 - MIR3 SINE MIR -55 153 2 492 258 50 25 chr11 140541900 140542020 -8241452 + L2 LINE L2 3150 3272 0 223 239 0 0 chr11 140542299 140542345 -8241127 + (CA)n Simple_repeat Simple_repeat 2 47 0 4081 169 20 30 chr11 140542371 140543253 -8240219 + L1MB2 LINE L1 5289 6162 -9 1661 193 7 10 chr11 140543253 140543548 -8239924 - AluJb SINE Alu -18 294 1 423 284 102 10 chr11 140543749 140543946 -8239526 - MIR SINE MIR 0 262 48 186 279 47 58 chr11 140544665 140544751 -8238721 + L2 LINE L2 2887 2971 -301 319 203 31 102 chr11 140544926 140545054 -8238418 + L2 LINE L2 3120 3238 -75 3180 122 55 43 chr11 140546055 140546214 -8237258 + L1MA8 LINE L1 5660 5816 -475 2289 110 0 3 chr11 140546214 140546523 -8236949 - AluSc SINE Alu -1 308 1 3180 122 55 43 chr11 140546523 140546986 -8236486 + L1MA8 LINE L1 5816 6289 -2 27 0 0 0 chr11 140546988 140547015 -8236457 + AT_rich Low_complexity Low_complexity 1 27 0 2259 96 0 0 chr11 140547160 140547452 -8236020 - AluSq SINE Alu -21 292 1 209 265 0 0 chr11 140547991 140548040 -8235432 + MIR SINE MIR 91 139 -123 23 0 0 0 chr11 140548759 140548782 -8234690 + AT_rich Low_complexity Low_complexity 1 23 0 268 64 43 0 chr11 140548910 140548957 -8234515 + (TC)n Simple_repeat Simple_repeat 1 49 0 249 83 0 0 chr11 140549382 140549418 -8234054 + (GA)n Simple_repeat Simple_repeat 1 36 0 1048 155 50 85 chr11 140550055 140550313 -8233159 + L1PB4 LINE L1 5906 6154 -2 1721 103 66 0 chr11 140551723 140551966 -8231506 - AluSx SINE Alu -53 259 1 485 141 82 0 chr11 140552015 140552280 -8231192 - FRAM SINE Alu 0 335 64 327 256 68 0 chr11 140552406 140552523 -8230949 + L1MCa LINE L1 1991 2115 -4311 28 29 0 0 chr11 140552727 140552762 -8230710 + AT_rich Low_complexity Low_complexity 1 35 0 307 206 0 28 chr11 140553086 140553193 -8230279 + GA-rich Low_complexity Low_complexity 2 105 0 23 0 0 0 chr11 140553621 140553644 -8229828 + AT_rich Low_complexity Low_complexity 1 23 0 272 308 0 15 chr11 140554118 140554183 -8229289 - MIR SINE MIR -129 79 16 27 29 0 0 chr11 140554270 140554304 -8229168 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr11 140554362 140554384 -8229088 + AT_rich Low_complexity Low_complexity 1 22 0 2558 250 53 21 chr11 140554460 140554607 -8228865 - L1MC4 LINE L1 -8 8034 7893 297 0 0 0 chr11 140554607 140554640 -8228832 + (TG)n Simple_repeat Simple_repeat 2 34 0 2558 250 53 21 chr11 140554640 140555413 -8228059 - L1MC4 LINE L1 -149 7893 7084 283 136 0 102 chr11 140555573 140555632 -8227840 + L3 LINE CR1 1524 1576 -1 2439 62 0 3 chr11 140556467 140556775 -8226697 - AluY SINE Alu -4 307 1 257 340 87 0 chr11 140557188 140557291 -8226181 - L2 LINE L2 -6 3307 3196 311 286 65 35 chr11 140559501 140559700 -8223772 + MIR SINE MIR 29 233 -29 201 250 0 23 chr11 140559803 140559847 -8223625 + L2 LINE L2 3251 3293 -20 4036 150 52 38 chr11 140560432 140561253 -8222219 - L1MA7 LINE L1 0 6291 5459 282 106 0 0 chr11 140562294 140562341 -8221131 + (TC)n Simple_repeat Simple_repeat 2 48 0 2251 95 0 0 chr11 140565709 140566005 -8217467 - AluSx SINE Alu -16 296 1 3567 173 53 84 chr11 140566019 140566940 -8216532 + MER21A LTR ERV1 9 901 -30 1255 181 54 4 chr11 140567269 140567630 -8215842 + AluJb SINE Alu 36 409 0 924 204 14 86 chr11 140568197 140568476 -8214996 + MER41C LTR ERV1 1 259 -295 5451 168 48 94 chr11 140568983 140570538 -8212934 + MER52A LTR ERV1 273 1755 0 1278 176 12 4 chr11 140570538 140570787 -8212685 + MER41C LTR ERV1 302 552 -2 841 133 13 26 chr11 140571442 140571593 -8211879 - AluSc SINE Alu -2 307 159 2085 126 0 13 chr11 140572380 140572736 -8210736 + AluSg SINE Alu 1 310 0 462 309 24 42 chr11 140573710 140573878 -8209594 - MIR3 SINE MIR -23 185 21 294 29 0 0 chr11 140573993 140574028 -8209444 + (CA)n Simple_repeat Simple_repeat 1 35 0 26 0 0 0 chr11 140574111 140574137 -8209335 + AT_rich Low_complexity Low_complexity 1 26 0 1752 180 18 0 chr11 140574230 140574513 -8208959 + AluJb SINE Alu 1 288 -24 3886 137 33 75 chr11 140574773 140575592 -8207880 + LTR1 LTR ERV1 1 785 0 286 277 11 11 chr11 140578171 140578265 -8205207 - MLT1I LTR MaLR 0 409 316 259 224 47 65 chr11 140578321 140578428 -8205044 - MLT1J2 LTR MaLR -237 213 109 782 259 0 0 chr11 140579560 140579726 -8203746 + FRAM SINE Alu 1 166 0 357 309 75 8 chr11 140580244 140580496 -8202976 + L1ME4a LINE L1 5552 5820 -301 1855 312 60 24 chr11 140580526 140581196 -8202276 + L1MB8 LINE L1 11 704 -6155 1972 241 70 48 chr11 140581204 140582814 -8200658 + L1MB8 LINE L1 901 2715 -4423 1164 111 12 0 chr11 140582966 140583137 -8200335 + L1PA11 LINE L1 6002 6174 0 9994 232 55 22 chr11 140583200 140583944 -8199528 + L1MB8 LINE L1 2610 3328 -3661 2099 129 0 3 chr11 140583944 140584238 -8199234 + AluSg SINE Alu 1 293 -17 9994 232 55 22 chr11 140584238 140587201 -8196271 + L1MB8 LINE L1 3328 6452 -537 1815 79 0 32 chr11 140587201 140587454 -8196018 + AluY SINE Alu 59 303 -8 9994 232 55 22 chr11 140587454 140588011 -8195461 + L1MB8 LINE L1 6452 6989 0 200 130 22 0 chr11 140588095 140588141 -8195331 + (TA)n Simple_repeat Simple_repeat 1 47 0 358 208 79 10 chr11 140588218 140588319 -8195153 + L1ME4a LINE L1 5976 6083 -38 2178 121 3 6 chr11 140588533 140588846 -8194626 - AluSx SINE Alu 0 312 1 434 311 83 6 chr11 140589052 140589232 -8194240 + MIR SINE MIR 41 234 -28 270 232 33 33 chr11 140590382 140590483 -8192989 + MIR SINE MIR 63 163 -45 24 32 0 0 chr11 140590600 140590631 -8192841 + AT_rich Low_complexity Low_complexity 1 31 0 1531 194 0 75 chr11 140590885 140591220 -8192252 + AluJb SINE Alu 3 312 0 1496 85 22 22 chr11 140592265 140592488 -8190984 - L1PA8A LINE L1 0 6131 5909 221 308 28 28 chr11 140592552 140592659 -8190813 - L2 LINE L2 -589 2725 2619 1172 235 25 42 chr11 140593221 140593621 -8189851 - L1MB7 LINE L1 -9 6175 5783 189 0 0 0 chr11 140594065 140594086 -8189386 + (CA)n Simple_repeat Simple_repeat 2 22 0 2143 121 0 16 chr11 140594508 140594815 -8188657 + AluSx SINE Alu 1 302 -10 548 243 90 11 chr11 140594961 140595138 -8188334 + MIR SINE MIR 66 256 -6 2516 61 0 0 chr11 140595243 140595539 -8187933 + AluY SINE Alu 1 296 -15 958 145 0 13 chr11 140595540 140595692 -8187780 + FAM SINE Alu 1 48 -1 3679 127 22 8 chr11 140596668 140597265 -8186207 + L1PB2 LINE L1 5543 6147 -4 1226 88 22 0 chr11 140597351 140597533 -8185939 + L1MA3 LINE L1 6120 6305 0 2803 161 15 14 chr11 140598215 140598881 -8184591 - L1MA5 LINE L1 -8 6292 5543 306 276 93 29 chr11 140599307 140599553 -8183919 + L1ME3 LINE L1 4752 5013 -1133 28 29 0 0 chr11 140599671 140599706 -8183766 + AT_rich Low_complexity Low_complexity 1 35 0 488 222 37 32 chr11 140599747 140599936 -8183536 + L1ME3 LINE L1 5254 5443 -719 240 314 115 62 chr11 140599972 140600282 -8183190 + L1ME3 LINE L1 5522 5873 -289 440 145 13 0 chr11 140600282 140600358 -8183114 - MADE1 DNA Mariner 0 80 4 240 314 115 62 chr11 140600358 140600579 -8182893 + L1ME3 LINE L1 5873 6081 -81 486 290 85 54 chr11 140600692 140600951 -8182521 + L1ME1 LINE L1 45 311 -6085 2813 252 42 39 chr11 140600965 140602049 -8181423 + L1ME1 LINE L1 3641 4731 -1484 2281 71 7 0 chr11 140602049 140602353 -8181119 - AluY SINE Alu 0 306 1 2813 252 42 39 chr11 140602353 140602392 -8181080 + L1ME1 LINE L1 4731 4768 -1447 1512 158 79 52 chr11 140605055 140605383 -8178089 - MER1B DNA MER1_type 0 337 1 256 284 0 12 chr11 140605574 140605655 -8177817 + (TG)n Simple_repeat Simple_repeat 1 80 0 25 0 0 0 chr11 140605902 140605927 -8177545 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr11 140607684 140607706 -8175766 + AT_rich Low_complexity Low_complexity 1 22 0 21 95 0 0 chr11 140607948 140608011 -8175461 + AT_rich Low_complexity Low_complexity 1 63 0 1069 183 30 26 chr11 140608801 140609031 -8174441 - L1MD2 LINE L1 -24 6335 6105 2064 278 64 16 chr11 140610290 140611606 -8171866 + L1ME1 LINE L1 4855 6230 -5 1485 40 0 0 chr11 140611668 140611843 -8171629 - L1PA5 LINE L1 -151 6003 5829 1165 22 0 0 chr11 140611843 140611977 -8171495 + L1PA5 LINE L1 6008 6142 -12 321 26 0 0 chr11 140611984 140612022 -8171450 + (GA)n Simple_repeat Simple_repeat 2 39 0 321 319 89 66 chr11 140612133 140612662 -8170810 + L1MEc LINE L1 1688 2228 -4168 327 25 0 0 chr11 140612774 140612814 -8170658 + (CA)n Simple_repeat Simple_repeat 2 41 0 319 271 39 0 chr11 140612815 140612944 -8170528 + L1MEc LINE L1 2340 2473 -3742 21 0 0 0 chr11 140613051 140613072 -8170400 + AT_rich Low_complexity Low_complexity 1 21 0 286 243 0 14 chr11 140613072 140613142 -8170330 + L1MCa LINE L1 558 626 -5938 1114 237 50 50 chr11 140613368 140613785 -8169687 + L1MCa LINE L1 572 988 -5057 2878 158 39 1 chr11 140613789 140614488 -8168984 + L1P5 LINE L1 5021 5752 -404 1361 269 121 31 chr11 140615692 140616213 -8167259 - MLT1E LTR MaLR -25 568 1 529 256 0 0 chr11 140616323 140616452 -8167020 + MIR SINE MIR 122 250 -12 1781 155 11 3 chr11 140618763 140619047 -8164425 + AluJb SINE Alu 4 289 -23 24 53 0 0 chr11 140619412 140619450 -8164022 + AT_rich Low_complexity Low_complexity 1 38 0 767 323 52 2 chr11 140619536 140619976 -8163496 - L1M4 LINE L1 -1153 4993 4532 792 180 131 0 chr11 140620088 140620271 -8163201 - MER20 DNA MER1_type 0 219 13 302 272 44 38 chr11 140620360 140620518 -8162954 - L1ME LINE L1 -329 5841 5683 23 0 0 0 chr11 140620839 140620862 -8162610 + AT_rich Low_complexity Low_complexity 1 23 0 549 0 0 0 chr11 140622208 140622269 -8161203 + (TC)n Simple_repeat Simple_repeat 2 62 0 1518 242 143 27 chr11 140622325 140622866 -8160606 - MLT1E LTR MaLR 0 568 1 377 277 15 8 chr11 140622974 140623104 -8160368 + MIR SINE MIR 119 249 -13 1906 139 0 0 chr11 140625381 140625691 -8157781 + AluJb SINE Alu 11 320 0 5429 88 5 3 chr11 140626077 140626841 -8156631 + L1PA7 LINE L1 5389 6154 0 22 35 0 0 chr11 140626841 140626870 -8156602 + AT_rich Low_complexity Low_complexity 1 29 0 984 299 36 17 chr11 140626930 140627405 -8156067 - L1ME LINE L1 -1131 5015 4532 696 204 133 6 chr11 140627516 140627697 -8155775 - MER20 DNA MER1_type -3 216 13 249 198 37 49 chr11 140627787 140627868 -8155604 - L1ME LINE L1 -329 5841 5762 227 291 15 22 chr11 140627938 140628072 -8155400 + (TA)n Simple_repeat Simple_repeat 2 134 0 215 227 0 0 chr11 140629661 140629705 -8153767 + (CA)n Simple_repeat Simple_repeat 1 44 0 907 280 80 26 chr11 140629724 140630255 -8153217 - MLT1E LTR MaLR 0 593 1 1153 75 0 0 chr11 140630449 140630596 -8152876 + L1P LINE L1 83 229 -5917 21 36 0 0 chr11 140633048 140633076 -8150396 + AT_rich Low_complexity Low_complexity 1 28 0 735 294 63 21 chr11 140633322 140633879 -8149593 - L1M4 LINE L1 -1146 5000 4421 602 283 91 0 chr11 140633888 140634075 -8149397 - MER20 DNA MER1_type 0 219 16 402 262 83 18 chr11 140634159 140634327 -8149145 - L1ME3A LINE L1 -333 5837 5659 31 26 0 0 chr11 140634640 140634678 -8148794 + AT_rich Low_complexity Low_complexity 1 38 0 186 43 0 0 chr11 140635567 140635590 -8147882 + (TC)n Simple_repeat Simple_repeat 2 24 0 1131 272 131 35 chr11 140635654 140636195 -8147277 - MLT1E LTR MaLR 0 593 1 443 248 23 30 chr11 140636267 140636400 -8147072 + MIR SINE MIR 119 250 -12 592 62 0 31 chr11 140637531 140637627 -8145845 + (TCTA)n Simple_repeat Simple_repeat 2 94 0 9759 90 20 1 chr11 140638692 140639995 -8143477 + HERVL LTR ERVL 3336 4662 -992 223 122 0 49 chr11 140640160 140640201 -8143271 + (TATG)n Simple_repeat Simple_repeat 2 40 0 714 326 55 14 chr11 140640376 140640720 -8142752 - ERVL LTR ERVL -3336 2428 2071 3509 97 0 12 chr11 140641511 140642029 -8141443 + L1MA1 LINE L1 5687 6198 -104 2279 91 0 0 chr11 140642412 140642699 -8140773 + AluSc SINE Alu 1 287 -22 459 202 0 0 chr11 140644281 140644380 -8139092 + CT-rich Low_complexity Low_complexity 2 100 0 234 250 12 107 chr11 140645581 140645665 -8137807 + MIR SINE MIR 71 146 -62 248 288 59 51 chr11 140647125 140647243 -8136229 - MIR3 SINE MIR -39 169 51 353 253 33 0 chr11 140647919 140648010 -8135462 - MER81 DNA DNA 0 114 21 2282 88 7 0 chr11 140648301 140648596 -8134876 + AluSc SINE Alu 1 297 -12 344 247 13 0 chr11 140648895 140648972 -8134500 - MIR SINE MIR -62 200 123 294 217 0 0 chr11 140649077 140649146 -8134326 + (TGGA)n Simple_repeat Simple_repeat 4 72 0 575 14 0 14 chr11 140649748 140649821 -8133651 + (TAGA)n Simple_repeat Simple_repeat 3 74 0 288 242 84 11 chr11 140651260 140651355 -8132117 - MIR SINE MIR -70 192 91 269 290 70 20 chr11 140653632 140653732 -8129740 + MIR3 SINE MIR 103 207 -1 230 154 0 26 chr11 140653790 140653829 -8129643 + Tigger5 DNA MER2_type 1 38 -2285 1505 161 0 4 chr11 140653835 140654095 -8129377 + Tigger5 DNA MER2_type 2062 2320 -3 207 264 14 135 chr11 140654583 140654731 -8128741 - MIR3 SINE MIR -64 144 15 441 276 158 7 chr11 140654960 140655112 -8128360 + MER5A DNA MER1_type 9 183 -6 27 29 0 0 chr11 140655812 140655846 -8127626 + AT_rich Low_complexity Low_complexity 1 34 0 7607 22 14 0 chr11 140655982 140657015 -8126457 - L1PA3 LINE L1 -2 6153 5115 3251 18 18 0 chr11 140657329 140657710 -8125762 - L1PA3 LINE L1 0 6155 5768 21 57 0 0 chr11 140658168 140658203 -8125269 + AT_rich Low_complexity Low_complexity 1 35 0 225 259 97 12 chr11 140658707 140658819 -8124653 - MIR SINE MIR -69 139 16 1528 214 107 5 chr11 140659017 140659419 -8124053 - L1MB7 LINE L1 -62 6122 5680 776 169 0 15 chr11 140659438 140659568 -8123904 - FLAM_C SINE Alu -15 128 1 445 181 29 29 chr11 140659576 140659681 -8123791 - L1MB7 LINE L1 -497 5687 5583 23567 165 14 29 chr11 140659682 140664819 -8118653 + L1P3 LINE L1 2 5381 -1080 2373 180 245 66 chr11 140664819 140665514 -8117958 + MER52A LTR ERV1 525 1343 -412 2665 167 37 74 chr11 140665622 140666192 -8117280 + MER52A LTR ERV1 1207 1755 0 389 272 74 43 chr11 140668412 140668574 -8114898 + MIR3 SINE MIR 34 200 -8 247 332 109 14 chr11 140669618 140669829 -8113643 - MIR SINE MIR -1 261 31 213 39 0 0 chr11 140671577 140671603 -8111869 + (CA)n Simple_repeat Simple_repeat 2 27 0 1847 226 52 8 chr11 140671689 140672212 -8111260 - L1M4 LINE L1 -2055 4091 3546 28 29 0 0 chr11 140672312 140672347 -8111125 + AT_rich Low_complexity Low_complexity 1 35 0 1128 108 6 17 chr11 140672354 140672530 -8110942 + L1PA15 LINE L1 5729 5902 -263 228 137 0 0 chr11 140672533 140672584 -8110888 + (TA)n Simple_repeat Simple_repeat 1 51 0 1667 123 0 19 chr11 140672634 140672894 -8110578 + L1PA15 LINE L1 5908 6162 -3 535 264 32 36 chr11 140672901 140673121 -8110351 - L1MEc LINE L1 -4547 1849 1631 301 127 32 0 chr11 140673126 140673189 -8110283 - L1MD1 LINE L1 -7 6235 6171 821 244 131 7 chr11 140673189 140673463 -8110009 + L1MA10 LINE L1 96 403 -6627 8358 198 48 32 chr11 140673463 140673771 -8109701 + L1MA10 LINE L1 4070 4372 -2734 1559 201 3 3 chr11 140673771 140674064 -8109408 + AluJb SINE Alu 1 293 -19 8358 198 48 32 chr11 140674064 140675927 -8107545 + L1MA10 LINE L1 4372 6276 -830 7594 41 6 0 chr11 140675968 140677668 -8105804 - L1PA5 LINE L1 -1 6153 4446 9743 44 9 12 chr11 140677668 140678929 -8104543 + L1P LINE L1 1935 3192 -2954 364 215 86 0 chr11 140678927 140679020 -8104452 + L1MA10 LINE L1 6264 6364 -930 * 2846 226 72 51 chr11 140679027 140679856 -8103616 + MER21B LTR ERV1 1 847 -16 334 109 0 0 chr11 140679861 140679907 -8103565 + tRNA-Gln-CAG tRNA tRNA 1 46 -29 4081 183 52 21 chr11 140679933 140680838 -8102634 + L1MA10 LINE L1 6360 7292 -2 409 275 42 6 chr11 140680839 140681006 -8102466 + L1MCa LINE L1 1075 1247 -5179 1845 240 67 20 chr11 140681065 140681906 -8101566 - L1ME LINE L1 -383 5783 4900 1326 234 17 17 chr11 140682019 140682374 -8101098 - L1ME LINE L1 -532 6028 5674 348 226 28 0 chr11 140682371 140682477 -8100995 + L1M4 LINE L1 5177 5285 -861 * 2173 250 97 34 chr11 140682490 140683811 -8099661 - L1MDa LINE L1 -3894 2646 1296 901 196 81 10 chr11 140683992 140684328 -8099144 - L1MD1 LINE L1 -7 6235 5825 22 0 0 0 chr11 140684336 140684358 -8099114 + AT_rich Low_complexity Low_complexity 1 22 0 12836 208 29 11 chr11 140684358 140688119 -8095353 + L1PA15 LINE L1 2012 5837 -328 3542 264 100 21 chr11 140688114 140689285 -8094187 - L1M3c LINE L1 -4878 1263 1 * 6335 89 5 3 chr11 140689379 140690735 -8092737 - L1PA10 LINE L1 -4 6164 4813 13547 150 6 7 chr11 140690737 140693025 -8090447 - L1PA10 LINE L1 -1493 4653 2367 349 157 52 0 chr11 140694620 140694698 -8088774 - MIR SINE MIR -38 170 83 245 204 91 23 chr11 140694813 140694901 -8088571 + L1MC4 LINE L1 6614 6707 -1335 27 29 0 0 chr11 140696708 140696742 -8086730 + AT_rich Low_complexity Low_complexity 1 34 0 308 351 26 19 chr11 140697438 140697592 -8085880 - MER5A DNA MER1_type 0 189 35 1900 121 23 16 chr11 140698109 140698416 -8085056 + AluSc SINE Alu 1 309 0 359 325 193 14 chr11 140698836 140699048 -8084424 + MIR SINE MIR 12 261 -1 185 325 130 24 chr11 140699144 140699267 -8084205 + MIR SINE MIR 26 161 -101 235 363 0 18 chr11 140700814 140700927 -8082545 + MIR SINE MIR 33 143 -119 479 337 78 75 chr11 140702855 140702893 -8080579 - L2 LINE L2 -2 3270 3234 400 325 18 6 chr11 140702893 140703062 -8080410 + MER96 DNA MER1_type 1 171 -4 479 337 78 75 chr11 140703062 140703596 -8079876 - L2 LINE L2 -38 3234 2692 572 287 90 14 chr11 140703706 140703929 -8079543 + MIR SINE MIR 22 261 -1 1615 118 12 97 chr11 140706116 140706455 -8077017 + AluY SINE Alu 1 310 -1 26 0 0 0 chr11 140706728 140706754 -8076718 + AT_rich Low_complexity Low_complexity 1 26 0 333 273 0 0 chr11 140706961 140707027 -8076445 - L2 LINE L2 -1 3271 3206 1825 138 69 36 chr11 140707132 140707495 -8075977 + THE1C LTR MaLR 1 375 0 506 265 22 33 chr11 140707656 140707837 -8075635 + L1MC3 LINE L1 1 179 -6247 * 2306 219 17 16 chr11 140707836 140708416 -8075056 + L1M4 LINE L1 4422 5002 -1144 5342 270 25 11 chr11 140708417 140708721 -8074751 + L1MC3 LINE L1 2813 3111 -3315 1861 167 7 0 chr11 140708721 140709021 -8074451 + AluJo SINE Alu 1 302 -10 5342 270 25 11 chr11 140709021 140710481 -8072991 + L1MC3 LINE L1 3111 4603 -1823 445 284 42 29 chr11 140710634 140710873 -8072599 + MER41E LTR ERV1 166 407 -105 433 297 21 0 chr11 140710888 140711033 -8072439 + L1M4 LINE L1 3914 4061 -2085 283 310 18 35 chr11 140711033 140711146 -8072326 + MER41E LTR ERV1 402 512 0 9885 200 30 22 chr11 140711148 140711187 -8072285 + L1MC3 LINE L1 4619 4656 -3409 1311 231 7 11 chr11 140711187 140711493 -8071979 + AluJb SINE Alu 1 305 0 9885 200 30 22 chr11 140711493 140711611 -8071861 + L1MC3 LINE L1 4656 4772 -3293 360 57 0 0 chr11 140711611 140711664 -8071808 + L1MA3 LINE L1 6246 6298 -7 9885 200 30 22 chr11 140711664 140714461 -8069011 + L1MC3 LINE L1 4772 7594 -471 654 299 76 10 chr11 140714474 140714775 -8068697 + L1M4 LINE L1 3784 4104 -2042 597 228 109 62 chr11 140714780 140715118 -8068354 + L1M4 LINE L1 4156 4509 -1637 24 103 0 0 chr11 140715124 140715211 -8068261 + AT_rich Low_complexity Low_complexity 1 87 0 474 290 65 55 chr11 140715214 140715414 -8068058 - MIR SINE MIR -38 224 23 1367 289 159 19 chr11 140715850 140716387 -8067085 + HAL1 LINE L1 753 1214 -1293 1887 122 0 18 chr11 140716387 140716666 -8066806 + AluSx SINE Alu 3 276 -36 180 0 0 0 chr11 140716669 140716689 -8066783 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1367 289 159 19 chr11 140716689 140717020 -8066452 + HAL1 LINE L1 1215 1747 -760 696 193 0 15 chr11 140717025 140717160 -8066312 + FLAM_A SINE Alu 1 133 0 2229 104 0 0 chr11 140717162 140717460 -8066012 + AluSg SINE Alu 1 298 -12 488 65 22 33 chr11 140717465 140717557 -8065915 + (GAAA)n Simple_repeat Simple_repeat 2 92 0 740 145 38 0 chr11 140717655 140717786 -8065686 + L1MA7 LINE L1 6147 6282 -9 371 277 20 0 chr11 140718756 140718857 -8064615 - L1M4 LINE L1 -2727 3419 3317 434 297 154 46 chr11 140719286 140719629 -8063843 + L1M4 LINE L1 2580 2885 -3261 1751 144 70 0 chr11 140719629 140719914 -8063558 + AluJo SINE Alu 1 305 -7 434 297 154 46 chr11 140719914 140720153 -8063319 + L1M4 LINE L1 2885 3225 -2921 5053 139 16 17 chr11 140720231 140721466 -8062006 + L1MA7 LINE L1 4874 6112 -179 739 201 0 21 chr11 140721545 140721689 -8061783 - MER3 DNA MER1_type -62 147 7 346 298 37 43 chr11 140721993 140722154 -8061318 + MIR SINE MIR 47 206 -56 30 27 0 0 chr11 140722559 140722596 -8060876 + AT_rich Low_complexity Low_complexity 1 37 0 184 355 26 13 chr11 140722800 140722876 -8060596 + MIR SINE MIR 39 115 -147 282 316 110 0 chr11 140722884 140723020 -8060452 + MIR SINE MIR 81 231 -31 259 337 12 0 chr11 140723545 140723628 -8059844 - MIR SINE MIR -75 133 50 237 331 16 0 chr11 140724692 140724816 -8058656 + (TA)n Simple_repeat Simple_repeat 2 127 0 2923 188 12 3 chr11 140725088 140725662 -8057810 - L1 LINE L1 -2192 3954 3376 750 224 13 6 chr11 140725662 140725818 -8057654 - ERVL LTR ERVL -5147 617 461 1675 184 7 0 chr11 140725998 140726280 -8057192 + MER49 LTR ERV1 2 285 -638 1345 149 80 99 chr11 140726310 140726672 -8056800 + MER4D LTR ERV1 549 903 0 653 257 39 19 chr11 140726711 140726968 -8056504 + L1MCc LINE L1 23 284 -6139 2063 227 68 87 chr11 140726973 140728000 -8055472 + L1MCc LINE L1 2859 3825 -3116 2539 55 0 3 chr11 140728000 140728309 -8055163 + AluY SINE Alu 1 308 -3 2063 227 68 87 chr11 140728309 140728473 -8054999 + L1MCc LINE L1 3825 3991 -2950 394 272 129 18 chr11 140728488 140728558 -8054914 + L1MCc LINE L1 1226 1287 -5136 1754 181 7 0 chr11 140728558 140728856 -8054616 + AluJb SINE Alu 1 300 -12 394 272 129 18 chr11 140728856 140729057 -8054415 + L1MCc LINE L1 1287 1527 -4896 397 242 104 11 chr11 140729130 140729312 -8054160 + L1MCc LINE L1 1829 2027 -5095 402 274 159 14 chr11 140729421 140729698 -8053774 + HAL1 LINE L1 2073 2389 -118 302 89 0 71 chr11 140729713 140729769 -8053703 + L1PA10 LINE L1 6117 6168 0 23 0 0 0 chr11 140729883 140729906 -8053566 + AT_rich Low_complexity Low_complexity 1 23 0 1072 245 94 30 chr11 140730106 140730477 -8052995 + MSTD LTR MaLR 2 396 0 204 40 0 0 chr11 140730714 140730739 -8052733 + (A)n Simple_repeat Simple_repeat 1 25 0 506 57 14 0 chr11 140731155 140731225 -8052247 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 180 77 0 0 chr11 140731369 140731395 -8052077 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 1658 170 0 42 chr11 140731838 140732144 -8051328 + AluJb SINE Alu 1 293 -19 691 295 88 4 chr11 140732563 140732790 -8050682 - MIR SINE MIR -16 246 1 444 273 104 19 chr11 140732851 140733005 -8050467 - MIR3 SINE MIR -4 204 38 923 221 34 0 chr11 140733608 140733812 -8049660 - LTR53 LTR ERVL -17 502 292 1795 252 155 18 chr11 140734206 140735008 -8048464 + L1MEc LINE L1 672 1583 -4813 246 176 0 0 chr11 140735057 140735108 -8048364 + (TA)n Simple_repeat Simple_repeat 2 52 0 207 204 0 0 chr11 140735161 140735210 -8048262 + (TA)n Simple_repeat Simple_repeat 2 50 0 5613 132 7 3 chr11 140735445 140736607 -8046865 + L1PA15 LINE L1 5000 6165 0 4351 114 11 39 chr11 140736607 140737293 -8046179 + L1PA16 LINE L1 5474 6155 -11 274 211 42 42 chr11 140737628 140737794 -8045678 + (TATAA)n Simple_repeat Simple_repeat 3 168 0 226 270 0 48 chr11 140737872 140737935 -8045537 - L2 LINE L2 -2921 393 334 465 105 47 0 chr11 140738109 140738195 -8045277 - L1MA3 LINE L1 0 6305 6216 198 0 0 0 chr11 140738264 140738286 -8045186 + (T)n Simple_repeat Simple_repeat 1 22 0 180 0 0 0 chr11 140738632 140738652 -8044820 + (T)n Simple_repeat Simple_repeat 1 20 0 1392 198 0 8 chr11 140739120 140739368 -8044104 - AluJo SINE Alu -25 287 42 324 301 161 36 chr11 140739526 140739805 -8043667 + L3 LINE CR1 1257 1570 -7 254 332 58 26 chr11 140740242 140740406 -8043066 - MIR SINE MIR -57 205 38 280 313 96 0 chr11 140740470 140740585 -8042887 + MIR SINE MIR 137 262 0 188 224 138 0 chr11 140740866 140740924 -8042548 - MIR3 SINE MIR -31 177 112 22 35 0 0 chr11 140740925 140740954 -8042518 + AT_rich Low_complexity Low_complexity 1 29 0 361 306 26 27 chr11 140741171 140741407 -8042065 + L1ME4a LINE L1 5648 5887 -262 204 139 0 28 chr11 140741407 140741443 -8042029 + (GAAAA)n Simple_repeat Simple_repeat 4 38 0 188 299 15 124 chr11 140742524 140742725 -8040747 - MIR3 SINE MIR -13 195 17 1222 83 61 0 chr11 140743791 140743971 -8039501 - L1PA10 LINE L1 -1 6167 5977 732 246 0 0 chr11 140744149 140744291 -8039181 + FRAM SINE Alu 1 142 -34 203 0 37 0 chr11 140744302 140744329 -8039143 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 25 31 0 0 chr11 140744452 140744484 -8038988 + AT_rich Low_complexity Low_complexity 1 32 0 2293 125 0 0 chr11 140744695 140745007 -8038465 + AluSx SINE Alu 1 312 0 25 0 0 0 chr11 140745270 140745295 -8038177 + AT_rich Low_complexity Low_complexity 1 25 0 339 279 162 26 chr11 140745411 140745565 -8037907 + MIR SINE MIR 84 258 -4 1333 316 65 20 chr11 140745751 140746606 -8036866 + L1MEc LINE L1 45 938 -5458 41 0 0 0 chr11 140746640 140746681 -8036791 + AT_rich Low_complexity Low_complexity 1 41 0 330 45 0 0 chr11 140748303 140748347 -8035125 + (CA)n Simple_repeat Simple_repeat 2 45 0 180 0 0 0 chr11 140749390 140749410 -8034062 + (T)n Simple_repeat Simple_repeat 1 20 0 283 294 54 71 chr11 140749766 140749940 -8033532 + MIR3 SINE MIR 21 191 -17 189 302 16 32 chr11 140749940 140750003 -8033469 - MER5A DNA MER1_type 0 189 128 1378 163 0 21 chr11 140750005 140750238 -8033234 + AluJo SINE Alu 85 312 0 270 81 0 0 chr11 140750470 140750507 -8032965 + (A)n Simple_repeat Simple_repeat 1 37 0 242 357 31 0 chr11 140750513 140750611 -8032861 - MER5A DNA MER1_type -77 112 12 4095 153 62 3 chr11 140750909 140751646 -8031826 + LTR39 LTR ERV1 2 782 -1 1024 101 32 0 chr11 140751684 140751842 -8031630 + MER83 LTR ERV1 1 163 -285 259 294 118 48 chr11 140751860 140752047 -8031425 + LTR4 LTR ERV1 1 200 -396 722 261 18 21 chr11 140752235 140752515 -8030957 + LTR4 LTR ERV1 318 596 0 * 1373 167 34 4 chr11 140752515 140752775 -8030697 + MER83 LTR ERV1 181 448 0 214 200 0 0 chr11 140752823 140752863 -8030609 + T-rich Low_complexity Low_complexity 1 40 0 13942 130 9 17 chr11 140753012 140755347 -8028125 - L1P LINE L1 -3825 2321 6 705 188 6 50 chr11 140755347 140755507 -8027965 + L1M2 LINE L1 4024 4176 -1970 * 2617 179 15 84 chr11 140755505 140756291 -8027181 + L1M2 LINE L1 4533 5264 -882 964 152 6 0 chr11 140756292 140756456 -8027016 + L1PB1 LINE L1 1 165 -6698 5641 145 13 13 chr11 140756457 140758101 -8025371 + L1PB1 LINE L1 5231 6867 0 1276 166 27 4 chr11 140758108 140758367 -8025105 + L1M2 LINE L1 5268 5532 -780 4872 163 13 22 chr11 140758503 140759481 -8023991 + L1MA9 LINE L1 5268 6236 -76 1826 106 7 3 chr11 140759516 140759800 -8023672 + L1PB1 LINE L1 5560 5844 -307 411 101 13 13 chr11 140759811 140759890 -8023582 + L1MA9 LINE L1 6234 6312 0 971 176 7 0 chr11 140760218 140760405 -8023067 - AluJo SINE Alu 0 316 129 441 179 0 0 chr11 140760409 140760493 -8022979 + T-rich Low_complexity Low_complexity 1 84 0 2268 114 7 0 chr11 140760597 140760962 -8022510 - AluSg SINE Alu 0 367 1 706 172 16 8 chr11 140760965 140761087 -8022385 - AluJo SINE Alu -179 133 11 2665 69 0 6 chr11 140761225 140761571 -8021901 + L1PA8A LINE L1 5788 6131 0 6515 74 2 9 chr11 140761814 140763019 -8020453 - L1PA8 LINE L1 -8 6164 4950 30 0 0 0 chr11 140763157 140763187 -8020285 + AT_rich Low_complexity Low_complexity 1 30 0 28 0 0 0 chr11 140763268 140763296 -8020176 + AT_rich Low_complexity Low_complexity 1 28 0 777 216 57 10 chr11 140763865 140764073 -8019399 + MLT1D LTR MaLR 318 503 -2 2247 185 42 38 chr11 140764727 140765230 -8018242 - MLT1D LTR MaLR 0 505 1 607 242 110 16 chr11 140765747 140765929 -8017543 + MIR SINE MIR 5 203 -59 241 177 32 16 chr11 140765961 140766023 -8017449 + (TTA)n Simple_repeat Simple_repeat 2 64 0 238 388 20 27 chr11 140766148 140766300 -8017172 - MIR SINE MIR -56 152 1 282 335 68 37 chr11 140767569 140767760 -8015712 + MIR3 SINE MIR 6 202 -6 2289 100 7 0 chr11 140767920 140768221 -8015251 + AluSc SINE Alu 1 303 -6 207 284 16 50 chr11 140769069 140769291 -8014181 - L2 LINE L2 0 3313 3131 317 310 181 7 chr11 140771375 140771530 -8011942 + MIR SINE MIR 71 252 -10 366 297 210 5 chr11 140772488 140772683 -8010789 - L3 LINE CR1 -8 1569 1335 1615 254 21 32 chr11 140773132 140773692 -8009780 - L1ME1 LINE L1 -5 6161 5608 * 3913 192 18 7 chr11 140773688 140774512 -8008960 - L1PA13 LINE L1 -1935 4862 4030 1005 126 0 7 chr11 140774512 140774663 -8008809 - AluYa5 SINE Alu -1 310 161 8413 234 48 23 chr11 140774668 140778042 -8005430 - L1PA13 LINE L1 -3331 3466 1 1350 220 9 3 chr11 140778043 140778371 -8005101 + MSTB LTR MaLR 3 426 0 7132 195 42 12 chr11 140778371 140779904 -8003568 + MSTB-int LTR MaLR 1 1578 -73 2281 275 43 38 chr11 140779908 140780718 -8002754 + L1PA12 LINE L1 7 820 -6761 879 274 105 58 chr11 140780728 140781234 -8002238 + L1PA12 LINE L1 610 1971 -5027 * 4483 227 6 26 chr11 140781229 140782479 -8000993 + L1PA12 LINE L1 1499 3512 -4072 650 174 0 147 chr11 140782485 140782669 -8000803 - L1 LINE L1 -2417 3793 3656 1927 119 70 17 chr11 140782669 140783013 -8000459 - THE1B LTR MaLR 0 364 3 650 174 0 147 chr11 140783013 140783086 -8000386 - L1 LINE L1 -2554 3656 3574 774 285 54 30 chr11 140783168 140783536 -7999936 - L1 LINE L1 -5763 378 2 22 0 0 0 chr11 140784197 140784219 -7999253 + AT_rich Low_complexity Low_complexity 1 22 0 1147 291 51 4 chr11 140785604 140786108 -7997364 - MER90 LTR ERV1 -2 612 6 230 340 43 24 chr11 140787020 140787210 -7996262 - MIR SINE MIR -55 207 17 189 0 0 0 chr11 140787347 140787368 -7996104 + (A)n Simple_repeat Simple_repeat 1 21 0 238 269 121 60 chr11 140788419 140788568 -7994904 + MIR3 SINE MIR 42 199 -9 1200 190 17 0 chr11 140788771 140789008 -7994464 - MSTB LTR MaLR -4 422 182 279 216 86 26 chr11 140789046 140789162 -7994310 + L1M4 LINE L1 3806 3928 -2218 315 308 81 22 chr11 140789165 140789350 -7994122 + L1M4 LINE L1 3932 4127 -2019 23 0 0 0 chr11 140789540 140789563 -7993909 + AT_rich Low_complexity Low_complexity 1 23 0 478 333 40 8 chr11 140789998 140790247 -7993225 + L1M4 LINE L1 4977 5233 -913 422 139 0 0 chr11 140790252 140790324 -7993148 - MER21-int LTR ERV1 -237 3954 3883 342 0 0 0 chr11 140790923 140790961 -7992511 + (TG)n Simple_repeat Simple_repeat 2 39 0 2247 94 152 15 chr11 140791092 140791486 -7991986 - LTR7 LTR ERV1 -2 448 1 2117 117 48 13 chr11 140791486 140791863 -7991609 - HERVH LTR ERV1 0 7713 7324 1273 139 19 0 chr11 140791863 140792079 -7991393 - HERVH LTR ERV1 -1894 5819 5600 3190 152 2 17 chr11 140792080 140792664 -7990808 - HERVH LTR ERV1 -2564 5149 4575 1248 109 0 0 chr11 140792661 140792844 -7990628 - HERVH LTR ERV1 -3043 4670 4488 * 5435 105 6 2 chr11 140792846 140793697 -7989775 - HERVH LTR ERV1 -3720 3993 3140 * 7496 111 3 25 chr11 140793691 140794944 -7988528 - HERVH LTR ERV1 -4726 2987 1763 222 171 0 0 chr11 140795177 140795218 -7988254 + T-rich Low_complexity Low_complexity 1 41 0 1685 131 57 78 chr11 140795298 140795857 -7987615 + MER51A LTR ERV1 1 634 0 1332 183 75 122 chr11 140795947 140796454 -7987018 + MER67D LTR ERV1 4 486 -28 3178 126 29 2 chr11 140796625 140797145 -7986327 + MER39B LTR ERV1 1 534 -119 531 124 21 10 chr11 140797145 140797242 -7986230 + MER4A LTR ERV1 1 98 -566 1794 148 3 22 chr11 140797242 140797594 -7985878 + MER4A LTR ERV1 261 664 0 2418 97 191 8 chr11 140797597 140798217 -7985255 + MER4A-int LTR ERV1 1 805 -5793 330 26 0 0 chr11 140798217 140798256 -7985216 + (CA)n Simple_repeat Simple_repeat 2 40 0 263 120 20 0 chr11 140798351 140798401 -7985071 + MER4A-int LTR ERV1 836 886 -5712 * 997 81 151 0 chr11 140798399 140798584 -7984888 + MER4A-int LTR ERV1 993 1205 -5393 398 110 0 6 chr11 140798684 140798801 -7984671 + MER4A-int LTR ERV1 624 805 -5793 330 26 0 0 chr11 140798801 140798840 -7984632 + (CA)n Simple_repeat Simple_repeat 2 40 0 306 80 20 0 chr11 140798935 140798985 -7984487 + MER4A-int LTR ERV1 836 886 -5712 * 7530 115 64 16 chr11 140798983 140800417 -7983055 + MER4A-int LTR ERV1 993 2495 -4103 1156 163 79 8 chr11 140800417 140800657 -7982815 - LTR8 LTR ERV1 -434 257 1 396 88 0 0 chr11 140800657 140800725 -7982747 + MER4A-int LTR ERV1 1862 1929 -3086 * 2766 144 87 25 chr11 140800723 140801398 -7982074 + MER4A-int LTR ERV1 2948 3664 -2934 15724 95 45 22 chr11 140801398 140804082 -7979390 + MER4A-int LTR ERV1 3849 6596 -2 421 172 32 11 chr11 140804091 140804184 -7979288 + MER4A LTR ERV1 4 98 -566 1634 153 20 22 chr11 140804184 140804530 -7978942 + MER4A LTR ERV1 261 664 0 656 155 78 0 chr11 140804530 140804642 -7978830 + LTR49 LTR ERV1 470 591 -4 332 305 47 30 chr11 140804769 140805130 -7978342 - L1M4 LINE L1 -812 5334 4968 885 169 81 37 chr11 140805182 140805455 -7978017 - LTR54B LTR ERV1 -1 497 213 198 0 0 0 chr11 140806451 140806473 -7976999 + (T)n Simple_repeat Simple_repeat 1 22 0 2178 100 3 7 chr11 140806522 140806812 -7976660 + AluSg SINE Alu 1 289 -21 228 290 9 0 chr11 140806958 140807065 -7976407 - L1MEc LINE L1 -3741 2388 2281 446 290 24 43 chr11 140807083 140807290 -7976182 - L1MEc LINE L1 -4048 2262 2060 180 0 0 0 chr11 140807291 140807311 -7976161 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 282 288 186 9 chr11 140807563 140807886 -7975586 - L1MEc LINE L1 -4681 1629 1250 2061 161 44 26 chr11 140807886 140808543 -7974929 - MER39 LTR ERV1 0 707 1 745 208 115 0 chr11 140808658 140808850 -7974622 + MER58A DNA MER1_type 10 223 -1 681 302 114 62 chr11 140808852 140809892 -7973580 - L1MEc LINE L1 -5017 1102 8 385 314 6 13 chr11 140809898 140810054 -7973418 + L1MC4a LINE L1 5128 5282 -864 1957 138 0 0 chr11 140810070 140810352 -7973120 - AluSx SINE Alu -30 282 1 259 345 34 19 chr11 140810495 140810759 -7972713 + L1MC4a LINE L1 5642 5909 -1899 2031 164 33 43 chr11 140810789 140811211 -7972261 - MER4E LTR ERV1 0 779 362 269 0 0 0 chr11 140811217 140811248 -7972224 + U2 snRNA snRNA 5 35 -153 1206 113 72 5 chr11 140811307 140811502 -7971970 - MER4B LTR ERV1 -402 208 1 1958 112 56 0 chr11 140811785 140812071 -7971401 - AluSx SINE Alu -10 302 1 33 43 0 0 chr11 140812185 140812232 -7971240 + AT_rich Low_complexity Low_complexity 1 47 0 467 138 0 0 chr11 140812606 140812671 -7970801 + AluS SINE Alu 1 65 -248 3232 103 33 6 chr11 140812708 140813191 -7970281 + LOR1a LTR ERV1 2 497 0 2145 120 30 0 chr11 140813969 140814269 -7969203 + AluSq SINE Alu 1 309 -4 345 302 134 20 chr11 140814504 140814653 -7968819 + MIR3 SINE MIR 19 184 -24 2137 125 3 0 chr11 140815662 140815959 -7967513 + AluSx SINE Alu 1 298 -14 24 67 0 0 chr11 140816149 140816194 -7967278 + AT_rich Low_complexity Low_complexity 1 45 0 990 169 121 132 chr11 140816726 140817164 -7966308 + LTR49 LTR ERV1 5 437 -158 294 192 185 46 chr11 140817148 140817278 -7966194 + LTR48 LTR ERV1 607 754 -33 * 2144 122 51 20 chr11 140817716 140818069 -7965403 + THE1B LTR MaLR 1 364 0 750 212 0 0 chr11 140818384 140818516 -7964956 + FLAM_C SINE Alu 1 132 -1 2561 137 60 19 chr11 140818526 140818762 -7964710 + MER39B LTR ERV1 12 237 -416 2173 127 0 3 chr11 140818762 140819062 -7964410 + AluSx SINE Alu 1 299 -13 2561 137 60 19 chr11 140819062 140819294 -7964178 + MER39B LTR ERV1 237 499 -154 824 223 6 0 chr11 140819321 140819478 -7963994 + AluJb SINE Alu 146 303 -9 507 162 128 0 chr11 140819478 140819595 -7963877 + MER39B LTR ERV1 522 653 0 1491 182 18 68 chr11 140819882 140820035 -7963437 + MLT1A1 LTR MaLR 1 160 -205 1387 70 0 10 chr11 140820035 140820235 -7963237 + L1MA5A LINE L1 6094 6291 -6 1491 182 18 68 chr11 140820235 140820465 -7963007 + MLT1A1 LTR MaLR 160 365 0 1996 143 49 22 chr11 140820899 140821264 -7962208 + THE1C LTR MaLR 1 375 0 728 261 54 10 chr11 140821386 140821589 -7961883 + MIR SINE MIR 44 255 -7 3104 168 53 22 chr11 140822112 140822748 -7960724 - MER67C LTR ERV1 -52 658 3 280 327 39 10 chr11 140822771 140822875 -7960597 - MER69 DNA AcHobo -752 474 368 2188 85 154 54 chr11 140823074 140823286 -7960186 - MSTA LTR MaLR 0 428 239 2141 115 7 3 chr11 140823286 140823582 -7959890 - AluSx SINE Alu -15 297 1 2188 85 154 54 chr11 140823582 140823758 -7959714 - MSTA LTR MaLR -189 239 1 2516 68 0 0 chr11 140824521 140824829 -7958643 - AluY SINE Alu -3 308 1 1490 277 74 78 chr11 140825230 140825956 -7957516 + L1MEc LINE L1 73 800 -5596 1777 194 0 3 chr11 140825956 140826250 -7957222 - AluJo SINE Alu -19 293 1 1490 277 74 78 chr11 140826250 140827288 -7956184 + L1MEc LINE L1 800 1830 -4566 248 162 44 0 chr11 140827283 140827351 -7956121 - L1MA10 LINE L1 -2 6332 6262 * 236 282 29 0 chr11 140827481 140827584 -7955888 - L1MEc LINE L1 -4950 1446 1341 * 4141 181 21 76 chr11 140827581 140827796 -7955676 - L1MA10 LINE L1 -70 6264 6039 1181 94 6 0 chr11 140827796 140827955 -7955517 - U1 snRNA snRNA -2 163 4 4141 181 21 76 chr11 140827955 140828808 -7954664 - L1MA10 LINE L1 -295 6039 5254 2500 151 16 39 chr11 140828812 140829248 -7954224 + MSTB LTR MaLR 1 426 0 3355 202 9 0 chr11 140829248 140829936 -7953536 + MSTB-int LTR MaLR 1 694 -957 1844 104 0 0 chr11 140829947 140830187 -7953285 - AluY SINE Alu -71 240 1 1828 141 11 0 chr11 140830193 140830462 -7953010 - AluJo SINE Alu -21 291 20 1628 238 37 10 chr11 140830490 140831006 -7952466 + L1ME1 LINE L1 5282 5811 -353 225 0 0 0 chr11 140831007 140831032 -7952440 + (T)n Simple_repeat Simple_repeat 1 25 0 1559 201 4 0 chr11 140831216 140831495 -7951977 - AluJb SINE Alu -29 283 4 1073 240 16 36 chr11 140831497 140831860 -7951612 + L1ME1 LINE L1 5801 6156 -10 2667 17 0 7 chr11 140832037 140832336 -7951136 - AluYb8 SINE Alu -6 312 16 192 77 0 0 chr11 140833460 140833486 -7949986 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 415 258 350 0 chr11 140834236 140834399 -7949073 + MIR SINE MIR 16 235 -27 607 262 60 30 chr11 140834431 140834664 -7948808 - LTR16A LTR ERVL -9 441 202 766 111 19 43 chr11 140835083 140835245 -7948227 + LTR7 LTR ERV1 293 450 0 342 0 0 0 chr11 140835376 140835414 -7948058 + (CA)n Simple_repeat Simple_repeat 2 39 0 422 139 0 0 chr11 140836014 140836086 -7947386 + MER21-int LTR ERV1 3883 3954 -237 227 229 24 12 chr11 140836091 140836174 -7947298 - L1M4 LINE L1 -913 5233 5150 192 77 0 0 chr11 140836428 140836454 -7947018 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 624 317 73 75 chr11 140836950 140837322 -7946150 - L2 LINE L2 -6 3266 2896 995 206 23 0 chr11 140837327 140837502 -7945970 - MER58A DNA MER1_type 0 224 46 213 274 0 0 chr11 140838252 140838303 -7945169 + (CTG)n Simple_repeat Simple_repeat 1 51 0 333 0 0 0 chr11 140838521 140838558 -7944914 + (CA)n Simple_repeat Simple_repeat 1 37 0 187 300 36 64 chr11 140838686 140838826 -7944646 + L2 LINE L2 2919 3054 -218 681 47 0 0 chr11 140838936 140839021 -7944451 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 210 240 40 0 chr11 140839037 140839087 -7944385 + L2 LINE L2 3254 3305 -8 2053 184 80 32 chr11 140842311 140842785 -7940687 - LOR1a LTR ERV1 0 497 1 3793 93 16 38 chr11 140842987 140843611 -7939861 + MER4B LTR ERV1 1 779 0 28 29 0 0 chr11 140844325 140844360 -7939112 + AT_rich Low_complexity Low_complexity 1 35 0 279 93 0 0 chr11 140844631 140844674 -7938798 + (TG)n Simple_repeat Simple_repeat 1 43 0 6262 107 7 8 chr11 140845452 140846840 -7936632 + L1PA15 LINE L1 4780 6165 0 309 322 50 83 chr11 140847735 140847935 -7935537 + L2 LINE L2 2550 2755 -517 1712 158 0 56 chr11 140847935 140848281 -7935191 - AluJb SINE Alu 0 329 1 309 322 50 83 chr11 140848281 140848506 -7934966 + L2 LINE L2 2755 2960 -312 1080 162 66 170 chr11 140848506 140849024 -7934448 + MER4C LTR ERV1 2 465 0 309 322 50 83 chr11 140849024 140849120 -7934352 + L2 LINE L2 2960 3058 -214 31 26 0 0 chr11 140849200 140849238 -7934234 + AT_rich Low_complexity Low_complexity 1 38 0 287 330 10 0 chr11 140849331 140849434 -7934038 + L2 LINE L2 3167 3270 -2 307 291 104 8 chr11 140849575 140849709 -7933763 + L1MC4a LINE L1 4958 5104 -1042 30 0 0 0 chr11 140849795 140849825 -7933647 + AT_rich Low_complexity Low_complexity 1 30 0 777 314 149 20 chr11 140849941 140850486 -7932986 + L1MC4a LINE L1 5266 5880 -1928 1488 101 5 5 chr11 140850683 140850882 -7932590 + AluSc SINE Alu 1 199 -110 571 169 4 3 chr11 140851005 140851111 -7932361 + MSTA LTR MaLR 258 416 0 467 284 65 65 chr11 140852425 140852780 -7930692 - L2 LINE L2 -26 3287 2933 351 327 78 10 chr11 140852854 140853059 -7930413 - L2 LINE L2 -429 2885 2667 281 299 211 4 chr11 140853555 140853806 -7929666 - L3 LINE CR1 -1 1576 1274 823 352 152 22 chr11 140853881 140853914 -7929558 + L3 LINE CR1 534 561 -1016 2258 124 0 0 chr11 140853914 140854221 -7929251 + AluSq SINE Alu 1 307 -6 823 352 152 22 chr11 140854221 140855001 -7928471 + L3 LINE CR1 561 1480 -97 2263 89 3 0 chr11 140855001 140855325 -7928147 + AluSp SINE Alu 1 325 0 823 352 152 22 chr11 140855325 140855418 -7928054 + L3 LINE CR1 1480 1560 -17 21 0 0 0 chr11 140857743 140857764 -7925708 + AT_rich Low_complexity Low_complexity 1 21 0 202 234 0 0 chr11 140857907 140857954 -7925518 + T-rich Low_complexity Low_complexity 1 47 0 271 304 130 22 chr11 140859055 140859193 -7924279 + MIR3 SINE MIR 32 184 -24 2304 104 3 0 chr11 140859427 140859726 -7923746 + AluSq SINE Alu 2 301 -12 445 269 8 50 chr11 140859728 140859847 -7923625 - MIR3 SINE MIR -82 126 13 484 234 35 7 chr11 140860234 140860379 -7923093 + MIR SINE MIR 114 262 0 8542 123 12 3 chr11 140860399 140861705 -7921767 + L1P LINE L1 4058 5375 -771 2368 86 0 0 chr11 140863570 140863862 -7919610 + AluSg SINE Alu 1 292 -18 411 113 0 0 chr11 140863862 140863924 -7919548 + (TA)n Simple_repeat Simple_repeat 1 62 0 227 152 0 0 chr11 140863925 140863971 -7919501 - LTR66 LTR ERVL -171 439 394 1263 187 26 73 chr11 140863988 140864331 -7919141 - MLT1A2 LTR MaLR -42 332 6 3825 174 30 1 chr11 140864540 140865200 -7918272 + L1MB2 LINE L1 5448 6126 -45 2212 107 0 26 chr11 140865200 140865508 -7917964 + AluSx SINE Alu 1 300 -12 653 191 26 0 chr11 140865518 140865633 -7917839 + FRAM SINE Alu 4 121 -55 198 0 0 0 chr11 140865633 140865655 -7917817 + (A)n Simple_repeat Simple_repeat 1 22 0 274 274 52 21 chr11 140865703 140865843 -7917629 + MIR SINE MIR 45 192 -61 2329 120 0 0 chr11 140866614 140866923 -7916549 + AluSx SINE Alu 1 309 -3 454 286 0 8 chr11 140867456 140867582 -7915890 + L2 LINE L2 3189 3313 0 239 71 24 0 chr11 140868454 140868496 -7914976 + (TG)n Simple_repeat Simple_repeat 1 43 0 1089 216 81 59 chr11 140868578 140868935 -7914537 + MLT1A1 LTR MaLR 1 365 0 380 282 10 0 chr11 140869015 140869118 -7914354 - MER5B DNA MER1_type -74 104 1 946 288 79 65 chr11 140869244 140869849 -7913623 + HAL1 LINE L1 10 623 -1884 189 0 0 0 chr11 140869989 140870010 -7913462 + (A)n Simple_repeat Simple_repeat 1 21 0 840 129 0 0 chr11 140870088 140870204 -7913268 - FLAM_C SINE Alu -27 116 1 1069 70 11 38 chr11 140870902 140871087 -7912385 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2000 149 7 0 chr11 140871103 140871411 -7912061 - AluSx SINE Alu -2 310 1 2375 86 3 10 chr11 140871612 140871915 -7911557 - AluSq SINE Alu -7 306 6 269 357 40 51 chr11 140872156 140872688 -7910784 + L2 LINE L2 2063 2588 -726 282 235 76 76 chr11 140872699 140872831 -7910641 - MER5B DNA MER1_type -12 166 35 576 289 133 0 chr11 140872875 140873055 -7910417 + MER63A DNA MER1_type 7 210 0 219 69 0 0 chr11 140873065 140873094 -7910378 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1637 152 0 8 chr11 140873111 140873375 -7910097 - AluJo SINE Alu -40 272 11 2014 125 0 14 chr11 140874093 140874408 -7909064 + AluSx SINE Alu 1 311 0 2028 29 0 25 chr11 140874500 140874738 -7908734 - SVA Other Other 0 1386 1155 2461 76 0 3 chr11 140875138 140875440 -7908032 + AluY SINE Alu 1 301 -10 2352 93 0 6 chr11 140875499 140875811 -7907661 + AluSq SINE Alu 1 310 -3 1974 158 3 0 chr11 140877851 140878149 -7905323 + AluSq SINE Alu 1 299 -14 1770 192 77 16 chr11 140878836 140879314 -7904158 + MLT2B2 LTR ERVL 1 549 -5 1882 164 7 3 chr11 140879390 140879695 -7903777 + AluJo SINE Alu 1 306 -6 364 327 48 28 chr11 140879716 140879908 -7903564 + MIR3 SINE MIR 8 202 -6 335 299 31 67 chr11 140880207 140880266 -7903206 - MIR3 SINE MIR -5 203 143 1627 146 0 88 chr11 140880266 140880457 -7903015 - AluJb SINE Alu 0 310 157 2314 119 0 0 chr11 140880457 140880768 -7902704 - AluSx SINE Alu -1 311 1 1627 146 0 88 chr11 140880768 140880913 -7902559 - AluJb SINE Alu -153 157 1 335 299 31 67 chr11 140880913 140881045 -7902427 - MIR3 SINE MIR -65 143 17 2111 94 7 18 chr11 140881201 140881518 -7901954 - AluSx SINE Alu 0 314 1 383 282 0 10 chr11 140881521 140881624 -7901848 - L2 LINE L2 -24 3289 3188 278 273 78 16 chr11 140881720 140881848 -7901624 - MIR SINE MIR -125 137 2 706 127 14 99 chr11 140881979 140882121 -7901351 + FLAM_C SINE Alu 1 130 -3 191 330 11 11 chr11 140883180 140883271 -7900201 - MIR SINE MIR -61 201 111 2112 128 7 0 chr11 140883790 140884079 -7899393 + AluSx SINE Alu 2 292 -20 205 197 26 0 chr11 140884080 140884156 -7899316 + (TA)n Simple_repeat Simple_repeat 2 79 0 2290 106 0 0 chr11 140884750 140885042 -7898430 - AluSx SINE Alu -20 292 1 1644 197 0 0 chr11 140885272 140885541 -7897931 + AluJo SINE Alu 1 269 -43 369 248 106 9 chr11 140886907 140887020 -7896452 + L2 LINE L2 3182 3305 -8 739 132 5 132 chr11 140887386 140887606 -7895866 + AluJo SINE Alu 4 195 -117 455 199 246 12 chr11 140887704 140887875 -7895597 + AluJo SINE Alu 90 300 -12 310 254 58 72 chr11 140888107 140888245 -7895227 - L2 LINE L2 0 3313 3178 327 286 176 33 chr11 140888728 140888938 -7894534 - L2 LINE L2 -923 2391 2152 1597 135 135 0 chr11 140888944 140889210 -7894262 + AluSx SINE Alu 1 302 0 229 343 0 0 chr11 140889217 140889287 -7894185 + GA-rich Low_complexity Low_complexity 3 72 0 733 172 0 0 chr11 140889295 140889411 -7894061 + FLAM_C SINE Alu 2 117 -26 370 258 31 62 chr11 140889802 140889930 -7893542 - MIR SINE MIR -116 146 23 240 291 0 0 chr11 140890085 140890140 -7893332 + MIR SINE MIR 43 97 -111 245 81 65 32 chr11 140890478 140890540 -7892932 + CT-rich Low_complexity Low_complexity 2 65 0 794 182 0 0 chr11 140890542 140890674 -7892798 - FLAM_A SINE Alu -1 132 1 279 274 0 14 chr11 140890679 140890752 -7892720 + L2 LINE L2 3234 3305 -8 2092 119 0 0 chr11 140890997 140891300 -7892172 + AluSx SINE Alu 1 303 -9 363 303 62 49 chr11 140891440 140891602 -7891870 + L3b LINE CR1 1288 1451 -132 1952 123 3 16 chr11 140891615 140891931 -7891541 - AluSx SINE Alu 0 312 1 445 231 22 76 chr11 140892359 140892788 -7890684 + MER21B LTR ERV1 6 425 -438 988 163 21 21 chr11 140892788 140892978 -7890494 + MER4D LTR ERV1 1 190 -682 775 189 126 0 chr11 140892979 140893122 -7890350 - AluJb SINE Alu -18 294 134 3701 142 12 59 chr11 140893174 140893584 -7889888 + MER4E LTR ERV1 131 498 -281 2074 96 6 59 chr11 140893584 140893907 -7889565 + AluSg SINE Alu 1 306 -4 3701 142 12 59 chr11 140893907 140894177 -7889295 + MER4E LTR ERV1 498 779 0 1822 159 62 117 chr11 140894177 140894275 -7889197 + MER21B LTR ERV1 422 524 -339 3386 106 81 14 chr11 140894275 140894671 -7888801 + MER41A LTR ERV1 1 442 -112 2048 137 3 0 chr11 140894671 140894977 -7888495 - AluSx SINE Alu -5 307 1 3386 106 81 14 chr11 140894977 140895099 -7888373 + MER41A LTR ERV1 442 554 0 1822 159 62 117 chr11 140895099 140895453 -7888019 + MER21B LTR ERV1 524 849 -14 251 167 0 0 chr11 140895605 140895647 -7887825 + MSTB LTR MaLR 1 42 -384 1565 189 0 44 chr11 140895648 140895965 -7887507 - AluJb SINE Alu -9 303 1 816 139 7 28 chr11 140895965 140896109 -7887363 - AluJo SINE Alu -171 141 1 1829 210 47 18 chr11 140896111 140896323 -7887149 + MSTB LTR MaLR 35 264 -162 2253 115 72 26 chr11 140896323 140896671 -7886801 - THE1B LTR MaLR 0 364 1 1829 210 47 18 chr11 140896671 140896839 -7886633 + MSTB LTR MaLR 264 426 0 2017 116 7 0 chr11 140896942 140897236 -7886236 - AluSx SINE Alu -16 296 1 397 266 164 34 chr11 140899126 140899339 -7884133 + MIR SINE MIR 3 237 -25 3409 28 0 0 chr11 140900312 140900708 -7882764 + L1PA4 LINE L1 5756 6151 -4 1786 166 0 7 chr11 140901224 140901525 -7881947 + AluSg SINE Alu 1 299 -11 2465 175 10 0 chr11 140901531 140901937 -7881535 - L1M1 LINE L1 -6135 1430 1021 1493 224 42 6 chr11 140901909 140902240 -7881232 - L1M1 LINE L1 -7214 351 9 * 575 261 39 22 chr11 140902321 140902501 -7880971 - MER5A DNA MER1_type 0 189 7 1244 180 225 20 chr11 140902672 140903027 -7880445 + MSTC LTR MaLR 1 428 0 1977 101 25 4 chr11 140903649 140903925 -7879547 + AluSx SINE Alu 1 282 -30 22 0 0 0 chr11 140904245 140904267 -7879205 + AT_rich Low_complexity Low_complexity 1 22 0 2071 105 10 3 chr11 140904281 140904576 -7878896 - AluSx SINE Alu -14 298 2 278 272 285 0 chr11 140904585 140904743 -7878729 - MIR SINE MIR -12 250 48 1925 147 0 0 chr11 140904762 140905069 -7878403 - AluSx SINE Alu 0 312 6 212 196 0 18 chr11 140905624 140905680 -7877792 + CT-rich Low_complexity Low_complexity 5 59 0 555 169 18 30 chr11 140905926 140906092 -7877380 + CT-rich Low_complexity Low_complexity 4 167 0 1885 105 6 59 chr11 140906115 140906439 -7877033 - AluSx SINE Alu -5 307 1 1116 164 21 0 chr11 140906468 140906657 -7876815 - AluJo SINE Alu -117 195 3 1395 190 25 85 chr11 140907974 140908337 -7875135 - MER58B DNA MER1_type 0 341 1 24 0 0 0 chr11 140908352 140908376 -7875096 + AT_rich Low_complexity Low_complexity 1 24 0 1857 136 4 0 chr11 140909520 140909800 -7873672 + AluSx SINE Alu 1 281 -31 207 0 0 0 chr11 140909803 140909826 -7873646 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1002 302 104 77 chr11 140910117 140910428 -7873044 + L3 LINE CR1 519 820 -757 2010 126 3 19 chr11 140910428 140910745 -7872727 - AluSx SINE Alu 0 312 1 1002 302 104 77 chr11 140910745 140911134 -7872338 + L3 LINE CR1 820 1249 -328 1744 124 12 0 chr11 140911134 140911383 -7872089 + AluSx SINE Alu 11 262 -50 1002 302 104 77 chr11 140911383 140911539 -7871933 + L3 LINE CR1 1249 1399 -178 1181 169 132 29 chr11 140911553 140911728 -7871744 - Tigger7 DNA MER2_type -2220 267 59 1465 198 17 3 chr11 140911728 140912026 -7871446 - AluJb SINE Alu -2 310 9 1181 169 132 29 chr11 140912026 140912092 -7871380 - Tigger7 DNA MER2_type -2428 59 1 220 260 187 57 chr11 140912098 140912221 -7871251 + L3 LINE CR1 1436 1574 -3 206 328 30 15 chr11 140912430 140912497 -7870975 - L3b LINE CR1 -5 1578 1511 2020 133 7 3 chr11 140914060 140914362 -7869110 - AluSx SINE Alu -9 303 1 199 261 146 46 chr11 140914395 140914525 -7868947 + MIR SINE MIR 99 241 -21 1771 159 3 10 chr11 140914612 140914926 -7868546 + AluSx SINE Alu 1 312 0 1806 156 7 3 chr11 140915134 140915435 -7868037 + AluSx SINE Alu 1 302 -10 420 215 73 78 chr11 140915436 140915627 -7867845 - MIR SINE MIR -14 248 59 362 337 84 6 chr11 140915636 140915802 -7867670 - L2 LINE L2 -224 3048 2870 1939 135 6 6 chr11 140915941 140916253 -7867219 - AluSx SINE Alu 0 312 1 1362 191 106 35 chr11 140916288 140916629 -7866843 - MLT1A1 LTR MaLR 0 365 1 198 296 173 12 chr11 140916806 140916887 -7866585 - L2 LINE L2 -31 3241 3148 364 235 231 29 chr11 140917900 140918138 -7865334 - L2 LINE L2 -1362 1952 1667 183 80 0 0 chr11 140918191 140918216 -7865256 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 793 183 0 0 chr11 140918242 140918368 -7865104 + AluJb SINE Alu 2 127 -185 354 153 17 0 chr11 140918368 140918427 -7865045 + Alu SINE Alu 240 299 -3 636 304 104 47 chr11 140918733 140919137 -7864335 - L2 LINE L2 -528 2786 2360 1131 108 6 0 chr11 140919397 140919554 -7863918 + AluSx SINE Alu 1 158 -154 183 42 0 0 chr11 140921179 140921203 -7862269 + (TC)n Simple_repeat Simple_repeat 2 25 0 318 50 0 0 chr11 140921205 140921245 -7862227 + (CA)n Simple_repeat Simple_repeat 1 40 0 239 330 0 58 chr11 140921318 140921421 -7862051 + L2 LINE L2 3211 3307 -6 658 263 46 42 chr11 140921477 140921694 -7861778 + MIR SINE MIR 22 239 -23 589 297 98 15 chr11 140922254 140922520 -7860952 + L2 LINE L2 3026 3313 0 229 210 138 22 chr11 140923415 140923457 -7860015 - Charlie7 DNA MER1_type -32 2580 2544 366 61 0 0 chr11 140923457 140923506 -7859966 + (CA)n Simple_repeat Simple_repeat 2 50 0 229 210 138 22 chr11 140923506 140923601 -7859871 - Charlie7 DNA MER1_type -68 2544 2427 22 0 0 0 chr11 140923616 140923638 -7859834 + AT_rich Low_complexity Low_complexity 1 22 0 2362 109 58 0 chr11 140923641 140924018 -7859454 - L1MA2 LINE L1 -12 6292 5894 12183 126 49 19 chr11 140924041 140925965 -7857507 - L1M1 LINE L1 -4140 3425 1436 2178 100 3 0 chr11 140925965 140926264 -7857208 + AluSg SINE Alu 1 300 -10 12183 126 49 19 chr11 140926264 140926342 -7857130 - L1M1 LINE L1 -6129 1436 1362 1935 163 34 3 chr11 140926848 140926905 -7856567 - MER47B DNA MER2_type -1905 418 364 2158 103 0 3 chr11 140926905 140927207 -7856265 + AluSx SINE Alu 12 312 0 1935 163 34 3 chr11 140927207 140927474 -7855998 - MER47B DNA MER2_type -1959 364 84 515 276 40 106 chr11 140927890 140927954 -7855518 - MIR SINE MIR -5 257 190 1916 133 3 3 chr11 140927954 140928248 -7855224 - AluSx SINE Alu -18 294 1 515 276 40 106 chr11 140928248 140928458 -7855014 - MIR SINE MIR -72 190 1 2041 136 0 0 chr11 140929082 140929383 -7854089 - AluSx SINE Alu -11 301 1 661 209 0 23 chr11 140929603 140929732 -7853740 - FLAM_C SINE Alu -6 127 2 835 264 19 21 chr11 140929896 140930126 -7853346 - MIR SINE MIR -3 259 33 258 207 0 0 chr11 140930211 140930269 -7853203 + CT-rich Low_complexity Low_complexity 2 59 0 460 275 42 0 chr11 140932339 140932459 -7851013 + MIR SINE MIR 49 173 -89 1389 230 63 29 chr11 140932495 140932873 -7850599 - MSTD LTR MaLR -2 394 4 1893 139 10 0 chr11 140933092 140933386 -7850086 - AluSq SINE Alu -16 297 1 263 135 192 0 chr11 140933610 140933662 -7849810 + MIR3 SINE MIR 113 174 -34 180 125 0 0 chr11 140935464 140935496 -7847976 + (TC)n Simple_repeat Simple_repeat 2 33 0 307 311 131 16 chr11 140936208 140936391 -7847081 + MIR SINE MIR 11 214 -48 554 105 13 0 chr11 140936949 140937025 -7846447 + AluJb SINE Alu 113 189 -123 198 0 0 0 chr11 140937105 140937127 -7846345 + (T)n Simple_repeat Simple_repeat 1 22 0 181 338 108 29 chr11 140937716 140937920 -7845552 - L2 LINE L2 -37 3235 3016 2210 91 14 3 chr11 140938064 140938360 -7845112 + AluSx SINE Alu 1 299 -13 220 291 57 64 chr11 140938718 140938859 -7844613 + L3b LINE CR1 1105 1244 -339 270 234 91 0 chr11 140939859 140939936 -7843536 + MIR SINE MIR 63 146 -116 231 313 12 12 chr11 140940033 140940113 -7843359 + MIR SINE MIR 36 115 -93 21 36 0 0 chr11 140940184 140940212 -7843260 + AT_rich Low_complexity Low_complexity 1 28 0 1641 178 0 45 chr11 140940885 140941070 -7842402 + AluJo SINE Alu 1 168 -144 3275 124 14 68 chr11 140941070 140941098 -7842374 + LTR9 LTR ERV1 1 29 -583 2382 88 3 0 chr11 140941098 140941394 -7842078 + AluSq SINE Alu 5 301 -12 3275 124 14 68 chr11 140941394 140942012 -7841460 + LTR9 LTR ERV1 29 612 0 1641 178 0 45 chr11 140942012 140942135 -7841337 + AluJo SINE Alu 168 295 -17 1616 138 145 7 chr11 140942202 140942471 -7841001 - AluSg1 SINE Alu -2 307 2 241 369 47 7 chr11 140942551 140942700 -7840772 + MER5B DNA MER1_type 24 178 0 469 240 40 56 chr11 140943031 140943156 -7840316 - L2 LINE L2 -3 3310 3188 246 188 25 75 chr11 140943312 140943392 -7840080 + L2 LINE L2 2163 2238 -1076 847 186 116 0 chr11 140943418 140943590 -7839882 - MER3 DNA MER1_type -17 192 1 386 304 89 18 chr11 140943593 140943761 -7839711 + MIR SINE MIR 34 213 -49 1090 106 0 0 chr11 140943814 140943956 -7839516 + AluSg/x SINE Alu 171 312 0 655 237 0 0 chr11 140943976 140944111 -7839361 + FLAM_C SINE Alu 5 139 -4 661 128 34 20 chr11 140944632 140944780 -7838692 + GA-rich Low_complexity Low_complexity 3 152 0 212 269 0 30 chr11 140944833 140944900 -7838572 + L2 LINE L2 2311 2375 -939 620 329 54 18 chr11 140944944 140945336 -7838136 + L2 LINE L2 2486 2891 -423 242 217 17 17 chr11 140945456 140945516 -7837956 + MIR SINE MIR 132 191 -71 1989 145 3 10 chr11 140945641 140945945 -7837527 - AluJb SINE Alu -10 302 1 237 245 0 0 chr11 140946077 140946130 -7837342 + L2 LINE L2 3261 3313 0 2237 109 10 3 chr11 140946295 140946597 -7836875 + AluSc SINE Alu 1 304 -5 358 145 40 0 chr11 140946597 140946673 -7836799 + GA-rich Low_complexity Low_complexity 1 79 0 1475 96 10 5 chr11 140947046 140947244 -7836228 + AluSq SINE Alu 24 222 -91 22 35 0 0 chr11 140947351 140947380 -7836092 + AT_rich Low_complexity Low_complexity 1 29 0 2313 111 0 0 chr11 140947389 140947695 -7835777 - AluSx SINE Alu -6 306 1 351 78 0 0 chr11 140947916 140947967 -7835505 + (CA)n Simple_repeat Simple_repeat 1 51 0 695 186 86 0 chr11 140947991 140948131 -7835341 - FAM SINE Alu -33 152 1 2208 89 0 74 chr11 140948245 140948571 -7834901 - AluSq SINE Alu -11 302 1 2165 135 3 0 chr11 140949070 140949367 -7834105 - AluSx SINE Alu -12 300 3 198 0 0 0 chr11 140949649 140949671 -7833801 + (A)n Simple_repeat Simple_repeat 1 22 0 633 164 20 33 chr11 140949675 140949827 -7833645 + L1MB8 LINE L1 6028 6177 -1 215 161 18 0 chr11 140950188 140950244 -7833228 + (CAAA)n Simple_repeat Simple_repeat 4 60 0 291 336 30 45 chr11 140950653 140950787 -7832685 - MIR3 SINE MIR -62 146 15 2101 145 3 0 chr11 140950806 140951102 -7832370 - AluSx SINE Alu -15 297 1 198 0 0 0 chr11 140951354 140951376 -7832096 + (T)n Simple_repeat Simple_repeat 1 22 0 625 316 119 26 chr11 140951864 140952333 -7831139 - L3 LINE CR1 -9 1568 1056 2374 117 0 0 chr11 140952360 140952667 -7830805 - AluSx SINE Alu -5 307 1 370 280 127 0 chr11 140952744 140952862 -7830610 - MIR SINE MIR -72 190 58 237 299 232 23 chr11 140955132 140955309 -7828163 + MIR SINE MIR 48 261 -1 238 219 21 52 chr11 140955337 140955370 -7828102 + A-rich Low_complexity Low_complexity 4 37 -59 2058 155 0 16 chr11 140955370 140955687 -7827785 + AluJb SINE Alu 1 312 0 238 219 21 52 chr11 140955687 140955749 -7827723 + A-rich Low_complexity Low_complexity 37 96 0 2459 79 3 0 chr11 140956515 140956818 -7826654 - AluY SINE Alu -7 304 1 191 309 124 21 chr11 140956967 140957161 -7826311 + L2 LINE L2 2127 2340 -974 1452 89 5 5 chr11 140957266 140957456 -7826016 - AluY SINE Alu -121 190 1 212 204 41 0 chr11 140957621 140957670 -7825802 + L2 LINE L2 3221 3271 -1 258 382 0 0 chr11 140958416 140958526 -7824946 + MIR SINE MIR 30 139 -69 235 275 58 0 chr11 140960271 140960340 -7823132 - MIR SINE MIR -113 149 77 955 146 157 5 chr11 140960585 140960770 -7822702 + AluJb SINE Alu 86 298 -14 250 282 28 0 chr11 140961259 140961330 -7822142 + GA-rich Low_complexity Low_complexity 5 77 0 1757 159 11 0 chr11 140961417 140961693 -7821779 - AluJo SINE Alu -22 290 12 279 309 91 0 chr11 140961951 140962061 -7821411 - L2 LINE L2 -2 3270 3151 330 334 108 12 chr11 140962087 140962308 -7821164 + MIR SINE MIR 17 261 -1 238 323 196 0 chr11 140963544 140963702 -7819770 + MIR SINE MIR 8 196 -66 236 266 0 53 chr11 140963940 140964034 -7819438 + GA-rich Low_complexity Low_complexity 3 91 0 247 353 57 16 chr11 140965175 140965297 -7818175 - MER91C DNA MER1_type -13 127 1 1961 264 152 26 chr11 140968384 140969290 -7814182 + L2 LINE L2 1939 2958 -356 257 325 73 20 chr11 140969830 140969981 -7813491 - L3 LINE CR1 -37 1540 1382 685 59 0 29 chr11 140970385 140970487 -7812985 + L1PA5 LINE L1 6055 6153 -1 273 29 0 0 chr11 140970524 140970558 -7812914 + (TAA)n Simple_repeat Simple_repeat 1 34 0 303 28 0 0 chr11 140971310 140971346 -7812126 + (CA)n Simple_repeat Simple_repeat 1 36 0 556 114 0 0 chr11 140971460 140971539 -7811933 - AluJ/FRAM SINE Alu -13 299 221 1324 228 144 23 chr11 140971609 140972105 -7811367 + MER74A LTR ERVL 1 622 0 364 278 65 0 chr11 140972780 140972888 -7810584 - L2 LINE L2 -1 3312 3198 2201 118 0 0 chr11 140973089 140973377 -7810095 + AluSx SINE Alu 1 288 -24 977 193 117 0 chr11 140975470 140975667 -7807805 + AluJo SINE Alu 1 220 -92 215 77 0 26 chr11 140976105 140976144 -7807328 + (CAAAAA)n Simple_repeat Simple_repeat 3 40 0 191 308 123 34 chr11 140976165 140976311 -7807161 + L2 LINE L2 218 376 -2938 223 268 195 47 chr11 140976432 140976622 -7806850 - MIR SINE MIR -42 220 3 206 239 87 54 chr11 140977020 140977112 -7806360 - MIR3 SINE MIR -27 181 87 310 290 33 117 chr11 140977196 140977250 -7806222 - MIR3 SINE MIR -3 205 148 2194 75 10 45 chr11 140977250 140977558 -7805914 + AluSp SINE Alu 1 297 -16 310 290 33 117 chr11 140977558 140977717 -7805755 - MIR3 SINE MIR -60 148 10 225 204 129 54 chr11 140979353 140979446 -7804026 - MIR3 SINE MIR -45 163 64 2316 85 0 0 chr11 140979579 140979894 -7803578 - AluSx SINE Alu 0 315 1 26 0 0 0 chr11 140979909 140979935 -7803537 + AT_rich Low_complexity Low_complexity 1 26 0 314 164 16 0 chr11 140980407 140980468 -7803004 - MIR SINE MIR -105 157 96 219 217 0 0 chr11 140982226 140982272 -7801200 + GA-rich Low_complexity Low_complexity 1 46 0 1917 133 36 0 chr11 140983081 140983205 -7800267 + AluSx SINE Alu 1 119 -193 261 0 0 0 chr11 140983205 140983234 -7800238 + (TA)n Simple_repeat Simple_repeat 2 30 0 1917 133 36 0 chr11 140983234 140983388 -7800084 + AluSx SINE Alu 119 289 -23 1510 112 101 112 chr11 140983655 140984013 -7799459 + MER46B DNA MER2_type 1 229 -7 2320 173 39 28 chr11 140988998 140989461 -7794011 - MER67C LTR ERV1 -240 470 3 303 327 39 10 chr11 140989484 140989588 -7793884 - MER69 DNA AcHobo -2052 474 368 2274 84 148 54 chr11 140989787 140990001 -7793471 - MSTA LTR MaLR 0 428 236 1435 176 0 36 chr11 140990001 140990308 -7793164 - AluSx SINE Alu -16 296 1 2274 84 148 54 chr11 140990308 140990484 -7792988 - MSTA LTR MaLR -192 236 1 2212 103 0 10 chr11 140991247 140991558 -7791914 - AluY SINE Alu -3 308 1 3629 160 15 26 chr11 140991559 140992216 -7791256 + L1PA15 LINE L1 5516 6165 0 333 323 48 83 chr11 140993111 140993312 -7790160 + L2 LINE L2 2550 2756 -516 1712 158 0 56 chr11 140993312 140993658 -7789814 - AluJb SINE Alu 0 329 1 333 323 48 83 chr11 140993658 140993883 -7789589 + L2 LINE L2 2756 2960 -312 1019 181 60 164 chr11 140993883 140994401 -7789071 + MER4C LTR ERV1 2 465 0 333 323 48 83 chr11 140994401 140994497 -7788975 + L2 LINE L2 2960 3058 -214 31 26 0 0 chr11 140994577 140994615 -7788857 + AT_rich Low_complexity Low_complexity 1 38 0 287 330 10 0 chr11 140994708 140994811 -7788661 + L2 LINE L2 3167 3270 -2 30 0 0 0 chr11 140995172 140995202 -7788270 + AT_rich Low_complexity Low_complexity 1 30 0 660 296 160 18 chr11 140995311 140995863 -7787609 + L1MC4a LINE L1 5259 5825 -345 2314 95 0 3 chr11 140996060 140996355 -7787117 + AluSc SINE Alu 1 294 -15 2643 148 18 25 chr11 140996373 140996861 -7786611 + MER31A LTR ERV1 1 485 0 567 109 33 0 chr11 140997001 140997093 -7786379 + MLT2B2 LTR ERVL 1 95 -420 1340 81 85 57 chr11 140997093 140997304 -7786168 + AluSg/x SINE Alu 88 304 -6 1867 175 92 11 chr11 140997309 140997658 -7785814 + MLT2B2 LTR ERVL 101 477 -38 544 129 54 0 chr11 140997660 140997753 -7785719 + MER4A LTR ERV1 1 98 -566 526 103 39 44 chr11 140997753 140997912 -7785560 + MER4A LTR ERV1 261 539 -203 258 303 0 0 chr11 140998418 140998517 -7784955 + A-rich Low_complexity Low_complexity 1 99 0 324 176 0 0 chr11 140998893 140998961 -7784511 + (CCGGG)n Simple_repeat Simple_repeat 3 70 0 820 175 88 0 chr11 141000478 141000649 -7782823 - MER5A DNA MER1_type -2 187 2 280 306 41 0 chr11 141000982 141001080 -7782392 + L2 LINE L2 3199 3300 -13 275 273 94 70 chr11 141001332 141001460 -7782012 - L2 LINE L2 -8 3264 3134 1740 183 7 0 chr11 141002118 141002402 -7781070 + AluJb SINE Alu 1 286 -26 492 291 96 9 chr11 141003536 141003766 -7779706 - MIR SINE MIR -3 259 10 412 268 164 57 chr11 141005677 141006154 -7777318 - L2 LINE L2 -7 3265 2735 273 162 0 0 chr11 141006267 141006335 -7777137 + (TCTCTG)n Simple_repeat Simple_repeat 2 69 0 740 212 29 29 chr11 141006691 141006861 -7776611 + AluJo SINE Alu 124 293 -19 355 257 92 75 chr11 141006886 141007178 -7776294 + L1MEd LINE L1 593 889 -5230 211 269 43 32 chr11 141007489 141007582 -7775890 - L2 LINE L2 -718 2596 2503 685 243 16 48 chr11 141008692 141008881 -7774591 - MIR SINE MIR -64 198 16 220 284 184 0 chr11 141013181 141013322 -7770150 + MIR SINE MIR 53 219 -43 23 0 0 0 chr11 141017356 141017379 -7766093 + AT_rich Low_complexity Low_complexity 1 23 0 2403 73 0 3 chr11 141017524 141017826 -7765646 - AluY SINE Alu -10 301 1 306 304 123 27 chr11 141019338 141019417 -7764055 + L1MEd LINE L1 2161 2231 -3898 2196 117 0 3 chr11 141019417 141019717 -7763755 - AluSg SINE Alu -11 299 1 306 304 123 27 chr11 141019717 141020012 -7763460 + L1MEd LINE L1 2231 2571 -3558 450 283 77 31 chr11 141020263 141020616 -7762856 + L1MEc LINE L1 1919 2287 -4109 7216 119 57 4 chr11 141020649 141021818 -7761654 + Tigger3b DNA MER2_type 2 1231 0 195 327 0 0 chr11 141022198 141022253 -7761219 - MIR SINE MIR -63 145 91 2169 99 0 3 chr11 141022412 141022695 -7760777 + AluSq SINE Alu 21 302 -11 251 301 68 45 chr11 141023023 141023156 -7760316 - MLT1H LTR MaLR -391 158 23 227 283 0 0 chr11 141023457 141023517 -7759955 - L2 LINE L2 0 3313 3254 2277 109 0 0 chr11 141024180 141024483 -7758989 + AluSx SINE Alu 1 303 -9 284 149 0 0 chr11 141024588 141024635 -7758837 - L2 LINE L2 -12 3260 3214 1187 278 128 31 chr11 141025779 141026717 -7756755 - L2 LINE L2 -1 3312 2302 6931 66 7 3 chr11 141026722 141027957 -7755515 + L1PA7 LINE L1 4924 6154 0 1617 174 33 16 chr11 141028123 141028427 -7755045 + AluSx SINE Alu 1 309 -3 1135 56 17 22 chr11 141028433 141028612 -7754860 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 487 252 0 71 chr11 141028669 141028824 -7754648 + MIR SINE MIR 12 155 -107 1932 174 0 3 chr11 141029222 141029527 -7753945 - AluJb SINE Alu -8 304 1 24 0 0 0 chr11 141029917 141029941 -7753531 + AT_rich Low_complexity Low_complexity 1 24 0 2321 90 7 3 chr11 141030316 141030616 -7752856 + AluSc SINE Alu 1 301 -8 1279 153 18 31 chr11 141030701 141030923 -7752549 + AluJb SINE Alu 1 219 -93 287 163 0 0 chr11 141030939 141030988 -7752484 + AluSg/x SINE Alu 172 220 -82 287 163 0 0 chr11 141030971 141031020 -7752452 + AluSg/x SINE Alu 172 220 -82 287 163 0 0 chr11 141031003 141031052 -7752420 + AluSp/q SINE Alu 172 220 -83 287 163 0 0 chr11 141031035 141031084 -7752388 + AluSp/q SINE Alu 172 220 -83 287 163 0 0 chr11 141031067 141031116 -7752356 + AluSg/x SINE Alu 170 218 -82 737 158 33 0 chr11 141031135 141031255 -7752217 + AluJb SINE Alu 176 299 -13 1833 158 7 16 chr11 141031472 141031775 -7751697 + AluJb SINE Alu 1 300 -12 22 0 0 0 chr11 141032025 141032047 -7751425 + AT_rich Low_complexity Low_complexity 1 22 0 259 213 33 0 chr11 141032100 141032161 -7751311 + L2 LINE L2 3251 3313 0 2037 243 18 37 chr11 141032857 141033475 -7749997 + L1ME3 LINE L1 5326 5931 -231 1881 149 21 0 chr11 141033475 141033756 -7749716 + AluSx SINE Alu 1 287 -25 622 0 107 23 chr11 141033757 141033888 -7749584 + (TAGA)n Simple_repeat Simple_repeat 1 142 0 949 223 22 13 chr11 141033910 141034134 -7749338 + L1ME3 LINE L1 5922 6147 -15 357 314 77 23 chr11 141034163 141034383 -7749089 - MIR SINE MIR -3 259 28 277 327 0 40 chr11 141034545 141034646 -7748826 - MIR3 SINE MIR -6 202 106 259 221 84 32 chr11 141034710 141034805 -7748667 - MIR SINE MIR -147 115 16 953 129 0 0 chr11 141035279 141035411 -7748061 + FLAM_C SINE Alu 1 132 -11 25 0 0 0 chr11 141035416 141035441 -7748031 + AT_rich Low_complexity Low_complexity 1 25 0 1153 208 141 82 chr11 141036064 141036208 -7747264 - MLT1D LTR MaLR 0 505 371 1593 95 41 0 chr11 141036208 141036429 -7747043 - MER30 DNA MER1_type 0 230 1 1153 208 141 82 chr11 141036429 141036761 -7746711 - MLT1D LTR MaLR -134 371 1 1209 285 94 29 chr11 141036763 141037098 -7746374 + L2 LINE L2 2428 2740 -573 1652 185 17 0 chr11 141037098 141037390 -7746082 + AluJo SINE Alu 1 297 -15 1209 285 94 29 chr11 141037390 141037888 -7745584 + L2 LINE L2 2740 3313 0 27 0 0 0 chr11 141038830 141038857 -7744615 + AT_rich Low_complexity Low_complexity 1 27 0 2176 100 4 0 chr11 141038859 141039139 -7744333 + AluSq SINE Alu 21 301 -12 445 269 8 50 chr11 141039141 141039260 -7744212 - MIR3 SINE MIR -82 126 13 484 234 35 7 chr11 141039647 141039792 -7743680 + MIR SINE MIR 114 262 0 8542 123 12 3 chr11 141039812 141041118 -7742354 + L1P LINE L1 4058 5375 -771 2346 86 0 0 chr11 141042984 141043276 -7740196 + AluSg SINE Alu 1 292 -18 411 113 0 0 chr11 141043276 141043338 -7740134 + (TA)n Simple_repeat Simple_repeat 1 62 0 234 152 0 0 chr11 141043339 141043385 -7740087 - LTR66 LTR ERVL -171 439 394 228 174 0 0 chr11 141043347 141043393 -7740079 + LTR66 LTR ERVL 394 439 -171 * 1255 187 26 73 chr11 141043402 141043745 -7739727 - MLT1A2 LTR MaLR -42 332 6 3857 174 30 1 chr11 141043954 141044614 -7738858 + L1MB2 LINE L1 5448 6126 -45 2277 97 0 26 chr11 141044614 141044922 -7738550 + AluSx SINE Alu 1 300 -12 698 191 26 0 chr11 141044932 141045047 -7738425 + FRAM SINE Alu 4 121 -55 198 0 0 0 chr11 141045047 141045069 -7738403 + (A)n Simple_repeat Simple_repeat 1 22 0 300 274 52 21 chr11 141045117 141045257 -7738215 + MIR SINE MIR 45 192 -61 2306 120 0 0 chr11 141046028 141046336 -7737136 + AluSx SINE Alu 1 308 -4 495 277 0 15 chr11 141046866 141046996 -7736476 + L2 LINE L2 3186 3313 0 239 71 24 0 chr11 141047867 141047909 -7735563 + (TG)n Simple_repeat Simple_repeat 1 43 0 1196 219 81 59 chr11 141047991 141048348 -7735124 + MLT1A1 LTR MaLR 1 365 0 352 308 126 25 chr11 141048372 141048531 -7734941 + MER5B DNA MER1_type 4 178 0 1498 289 101 52 chr11 141048657 141049685 -7733787 + HAL1 LINE L1 10 1087 -1420 673 208 126 156 chr11 141049687 141050257 -7733215 + MLT1H1 LTR MaLR 3 548 0 810 246 23 42 chr11 141050276 141050536 -7732936 + HAL1 LINE L1 1485 1739 -768 982 156 88 10 chr11 141050536 141050728 -7732744 + MER20 DNA MER1_type 7 213 -6 517 248 36 107 chr11 141050793 141051156 -7732316 + HAL1 LINE L1 1815 2151 -356 692 240 107 0 chr11 141051173 141051369 -7732103 - MIR SINE MIR -40 222 6 978 209 36 40 chr11 141051537 141051814 -7731658 + HAL1 LINE L1 2232 2507 0 22 0 0 0 chr11 141051814 141051836 -7731636 + AT_rich Low_complexity Low_complexity 1 22 0 4131 237 78 21 chr11 141052948 141053980 -7729492 + L1MD2 LINE L1 3447 4420 -1939 875 126 0 52 chr11 141053980 141054115 -7729357 + FLAM_C SINE Alu 5 132 -1 4131 237 78 21 chr11 141054115 141054763 -7728709 + L1MD2 LINE L1 4420 5030 -1329 1755 167 10 16 chr11 141054763 141055075 -7728397 + AluJb SINE Alu 1 310 -2 4131 237 78 21 chr11 141055075 141056120 -7727352 + L1MD2 LINE L1 5030 6359 0 23 33 0 0 chr11 141056127 141056157 -7727315 + AT_rich Low_complexity Low_complexity 1 30 0 644 306 18 0 chr11 141057570 141057740 -7725732 - MER63A DNA MER1_type -5 205 33 530 286 45 0 chr11 141057963 141058096 -7725376 + L2 LINE L2 3134 3272 0 235 350 51 0 chr11 141058092 141058229 -7725243 - MIR3 SINE MIR -16 192 49 * 189 0 0 0 chr11 141058522 141058543 -7724929 + (TCCC)n Simple_repeat Simple_repeat 1 21 0 1016 124 6 0 chr11 141058543 141058721 -7724751 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 934 259 0 19 chr11 141059142 141059354 -7724118 - ERVL-E LTR ERVL -3144 2620 2413 463 257 0 0 chr11 141059350 141059455 -7724017 - ERVL-E LTR ERVL -4573 1191 1087 * 643 168 2 87 chr11 141059493 141059628 -7723844 + L1MA9 LINE L1 5931 6020 -148 2313 114 3 0 chr11 141059628 141059936 -7723536 + AluSp SINE Alu 1 309 -4 643 168 2 87 chr11 141059936 141059972 -7723500 + L1MA9 LINE L1 6020 6057 -111 533 168 28 0 chr11 141059975 141060082 -7723390 + L1MA9 LINE L1 6181 6290 -22 21 57 0 0 chr11 141060082 141060117 -7723355 + AT_rich Low_complexity Low_complexity 1 35 0 1381 308 75 41 chr11 141060155 141060420 -7723052 - ERVL-E LTR ERVL -4774 990 735 1988 150 13 13 chr11 141060420 141060727 -7722745 - AluSx SINE Alu -5 307 1 1381 308 75 41 chr11 141060727 141061114 -7722358 - ERVL-E LTR ERVL -5029 735 316 344 208 0 14 chr11 141061384 141061456 -7722016 - MLT2E LTR ERVL -7 621 551 552 116 18 107 chr11 141061456 141061568 -7721904 + FLAM_A SINE Alu 30 131 -11 1308 173 75 31 chr11 141061572 141061827 -7721645 + AluJo SINE Alu 3 268 -44 1906 271 48 22 chr11 141061872 141062408 -7721064 - MLT2E LTR ERVL -60 568 19 188 267 20 89 chr11 141062890 141062991 -7720481 + MIR3 SINE MIR 109 202 -6 1941 143 0 7 chr11 141063042 141063322 -7720150 - AluSx SINE Alu -30 282 5 410 307 76 49 chr11 141063739 141063964 -7719508 + MIR SINE MIR 20 250 -12 503 322 90 40 chr11 141064124 141064503 -7718969 - L2 LINE L2 -5 3308 2911 474 262 243 23 chr11 141064581 141064795 -7718677 - LTR16C LTR ERVL -5 486 226 1026 197 0 10 chr11 141064833 141065031 -7718441 - L1MA6 LINE L1 -24 6276 6081 * 1683 134 36 0 chr11 141065030 141065306 -7718166 + L1MA6 LINE L1 5585 5870 -430 281 280 43 32 chr11 141065328 141065421 -7718051 - LTR16C LTR ERVL -311 180 87 2317 99 0 7 chr11 141065464 141065767 -7717705 + AluSx SINE Alu 1 301 -11 758 190 0 0 chr11 141066131 141066247 -7717225 - FLAM_C SINE Alu -17 116 1 2244 104 7 10 chr11 141066391 141066700 -7716772 - AluSx SINE Alu -4 308 1 1013 95 0 29 chr11 141066710 141066847 -7716625 - FLAM_C SINE Alu 0 133 1 594 325 91 12 chr11 141066871 141067114 -7716358 + MIR SINE MIR 1 262 0 21 57 0 0 chr11 141067145 141067180 -7716292 + AT_rich Low_complexity Low_complexity 1 35 0 857 114 0 16 chr11 141067282 141067405 -7716067 + FLAM_C SINE Alu 11 131 -12 1826 72 149 4 chr11 141067903 141068165 -7715307 + AluY SINE Alu 1 300 -1 34 24 0 0 chr11 141068942 141068983 -7714489 + AT_rich Low_complexity Low_complexity 1 41 0 710 295 5 14 chr11 141069415 141069622 -7713850 + MIR SINE MIR 4 208 -54 23 0 0 0 chr11 141069802 141069825 -7713647 + GC_rich Low_complexity Low_complexity 1 23 0 2195 133 52 17 chr11 141071325 141071687 -7711785 - THE1C LTR MaLR 0 375 1 2542 88 48 26 chr11 141072544 141072896 -7710576 - THE1B LTR MaLR -4 360 1 1855 150 3 23 chr11 141072982 141073282 -7710190 - AluJb SINE Alu -18 294 1 1375 201 0 15 chr11 141074072 141074341 -7709131 - AluJo SINE Alu -3 309 45 221 296 71 51 chr11 141075274 141075372 -7708100 + MIR SINE MIR 63 162 -100 658 273 44 8 chr11 141075397 141075637 -7707835 - MIR SINE MIR -6 256 7 353 200 0 0 chr11 141075946 141076011 -7707461 + L2 LINE L2 3208 3272 0 201 290 0 92 chr11 141076014 141076084 -7707388 + MIR SINE MIR 83 137 -125 2755 17 0 3 chr11 141076084 141076386 -7707086 + AluYa5 SINE Alu 1 301 -10 201 290 0 92 chr11 141076386 141076446 -7707026 + MIR SINE MIR 137 201 -61 2289 137 11 55 chr11 141076451 141076830 -7706642 + THE1B LTR MaLR 1 362 -2 7425 106 16 0 chr11 141076832 141077834 -7705638 + THE1B-int LTR MaLR 1 1018 -562 1041 157 68 0 chr11 141077891 141078082 -7705390 - MER6 DNA MER2_type -168 697 494 4236 75 6 6 chr11 141078106 141078650 -7704822 + THE1B-int LTR MaLR 1037 1580 0 2462 129 14 11 chr11 141078650 141079013 -7704459 + THE1B LTR MaLR 1 364 0 280 313 62 40 chr11 141079381 141079557 -7703915 + MIR SINE MIR 18 197 -65 1749 152 78 35 chr11 141080093 141080441 -7703031 + THE1C LTR MaLR 1 363 -12 186 241 0 19 chr11 141080800 141080854 -7702618 - L2 LINE L2 -4 3268 3216 511 290 57 106 chr11 141081768 141082402 -7701070 - L2 LINE L2 -26 3287 2667 359 299 211 4 chr11 141082898 141083149 -7700323 - L3 LINE CR1 -1 1576 1274 1049 352 152 22 chr11 141083224 141083257 -7700215 + L3 LINE CR1 534 561 -1016 2237 124 0 0 chr11 141083257 141083564 -7699908 + AluSq SINE Alu 1 307 -6 1049 352 152 22 chr11 141083564 141084344 -7699128 + L3 LINE CR1 561 1480 -97 2235 89 3 0 chr11 141084344 141084668 -7698804 + AluSp SINE Alu 1 325 0 1049 352 152 22 chr11 141084668 141084761 -7698711 + L3 LINE CR1 1480 1560 -17 21 0 0 0 chr11 141087085 141087106 -7696366 + AT_rich Low_complexity Low_complexity 1 21 0 202 234 0 0 chr11 141087249 141087296 -7696176 + T-rich Low_complexity Low_complexity 1 47 0 311 304 130 22 chr11 141088397 141088535 -7694937 + MIR3 SINE MIR 32 184 -24 2213 107 7 3 chr11 141088769 141089069 -7694403 + AluSx SINE Alu 2 302 -10 21 0 0 0 chr11 141089263 141089284 -7694188 + AT_rich Low_complexity Low_complexity 1 21 0 218 102 34 68 chr11 141089290 141089349 -7694123 + (CAATA)n Simple_repeat Simple_repeat 4 60 0 807 171 0 0 chr11 141089374 141089491 -7693981 - FLAM_C SINE Alu -25 118 2 24 0 0 0 chr11 141089492 141089516 -7693956 + AT_rich Low_complexity Low_complexity 1 24 0 2257 125 0 0 chr11 141090430 141090847 -7692625 + AluSq SINE Alu 1 417 0 454 218 27 0 chr11 141090861 141090971 -7692501 - MLT1H LTR MaLR -424 125 13 420 280 63 0 chr11 141091145 141091288 -7692184 + L2 LINE L2 1489 1640 -1674 1082 291 107 42 chr11 141091294 141092004 -7691468 + L2 LINE L2 2558 3312 -1 241 296 43 17 chr11 141092031 141092146 -7691326 - MIR SINE MIR -44 218 101 1640 172 20 36 chr11 141092938 141093240 -7690232 - AluJo SINE Alu -15 297 1 841 291 158 17 chr11 141093299 141093705 -7689767 - L3 LINE CR1 -166 1411 949 258 344 66 8 chr11 141094206 141094328 -7689144 + L2 LINE L2 3139 3267 -5 205 342 25 0 chr11 141095092 141095171 -7688301 - MIR SINE MIR -16 246 166 314 367 0 0 chr11 141095539 141095629 -7687843 - L1MC4 LINE L1 -1339 6703 6614 306 0 0 0 chr11 141095633 141095667 -7687805 + (TC)n Simple_repeat Simple_repeat 1 34 0 2019 116 11 0 chr11 141095668 141095944 -7687528 - AluSx SINE Alu -33 279 1 825 279 13 13 chr11 141095996 141096229 -7687243 + MIR SINE MIR 25 257 -5 205 121 0 0 chr11 141096247 141096280 -7687192 - MIR SINE MIR -128 134 102 1042 191 10 5 chr11 141096797 141097001 -7686471 + MER3 DNA MER1_type 5 209 0 380 224 211 6 chr11 141098411 141098567 -7684905 - MER5A DNA MER1_type 0 189 2 264 300 50 0 chr11 141099141 141099241 -7684231 + MIR3 SINE MIR 88 192 -16 233 324 75 83 chr11 141100590 141100756 -7682716 - L2 LINE L2 -1 3271 3105 2356 101 0 3 chr11 141100756 141101062 -7682410 + AluSq SINE Alu 1 305 -8 233 324 75 83 chr11 141101062 141101244 -7682228 - L2 LINE L2 -167 3105 2926 381 305 80 13 chr11 141101293 141101444 -7682028 - L2 LINE L2 -468 2846 2686 239 294 107 53 chr11 141101707 141101897 -7681575 - MIR3 SINE MIR -61 201 1 397 298 46 26 chr11 141102273 141102424 -7681048 - MIR SINE MIR 0 262 109 2301 105 0 10 chr11 141102602 141102906 -7680566 + AluSx SINE Alu 1 301 -11 332 310 97 7 chr11 141102909 141103054 -7680418 - MIR SINE MIR -85 177 20 2458 84 3 0 chr11 141103442 141103752 -7679720 + AluY SINE Alu 1 311 0 671 262 118 40 chr11 141103872 141104517 -7678955 + L1M4 LINE L1 3986 4680 -1466 271 157 19 28 chr11 141104531 141104602 -7678870 - MER58 DNA MER1_type -29 2391 115 2555 71 0 7 chr11 141104721 141105031 -7678441 - AluY SINE Alu -3 308 1 256 302 131 13 chr11 141105251 141105648 -7677824 + L1M4 LINE L1 4945 5388 -758 1942 107 48 4 chr11 141105690 141105962 -7677510 - AluJb SINE Alu -15 297 14 195 42 0 0 chr11 141106597 141106621 -7676851 + (GGCTG)n Simple_repeat Simple_repeat 4 27 0 212 241 0 17 chr11 141106733 141106791 -7676681 + (TCCA)n Simple_repeat Simple_repeat 3 59 0 2287 127 0 0 chr11 141107618 141107926 -7675546 - AluSx SINE Alu -2 310 3 1971 148 7 10 chr11 141108578 141108888 -7674584 - AluJo SINE Alu -3 309 1 332 308 23 30 chr11 141109416 141109549 -7673923 - MIR3 SINE MIR -64 144 13 205 195 0 0 chr11 141110580 141110621 -7672851 + A-rich Low_complexity Low_complexity 1 41 0 2506 81 0 0 chr11 141111739 141112035 -7671437 + AluSq SINE Alu 1 296 -17 1425 184 55 0 chr11 141112046 141112301 -7671171 + AluJb SINE Alu 28 296 -16 211 382 44 0 chr11 141112393 141112461 -7671011 - MIR SINE MIR -166 96 26 216 97 0 0 chr11 141112513 141112544 -7670928 + (TG)n Simple_repeat Simple_repeat 2 32 0 405 0 0 0 chr11 141114452 141114497 -7668975 + (TC)n Simple_repeat Simple_repeat 2 46 0 759 232 12 12 chr11 141114693 141114861 -7668611 - MIR3 SINE MIR -18 190 23 298 85 34 0 chr11 141117725 141117784 -7665688 + (TA)n Simple_repeat Simple_repeat 2 62 0 1855 165 0 14 chr11 141118111 141118402 -7665070 + AluJo SINE Alu 1 287 -25 210 171 0 0 chr11 141118402 141118443 -7665029 + GA-rich Low_complexity Low_complexity 3 43 0 * 799 90 28 14 chr11 141118433 141118578 -7664894 + (GAAA)n Simple_repeat Simple_repeat 4 150 0 705 307 128 34 chr11 141119441 141119910 -7663562 - L3 LINE CR1 -9 1568 1056 2334 115 3 0 chr11 141119937 141120242 -7663230 - AluSx SINE Alu -6 306 1 399 280 127 0 chr11 141120319 141120437 -7663035 - MIR SINE MIR -72 190 58 268 299 232 23 chr11 141122707 141122884 -7660588 + MIR SINE MIR 48 261 -1 234 263 32 0 chr11 141122912 141122945 -7660527 + A-rich Low_complexity Low_complexity 4 34 -67 2034 158 0 16 chr11 141122945 141123262 -7660210 + AluJb SINE Alu 1 312 0 234 263 32 0 chr11 141123262 141123323 -7660149 + A-rich Low_complexity Low_complexity 34 101 0 2411 86 3 0 chr11 141124089 141124392 -7659080 - AluY SINE Alu -7 304 1 202 300 134 27 chr11 141124512 141124735 -7658737 + L2 LINE L2 2094 2340 -974 1485 85 5 0 chr11 141124840 141125029 -7658443 - AluY SINE Alu -121 190 1 251 283 19 66 chr11 141125137 141125243 -7658229 + L2 LINE L2 3171 3271 -1 276 382 0 0 chr11 141125989 141126099 -7657373 + MIR SINE MIR 30 139 -69 249 275 58 0 chr11 141127846 141127915 -7655557 - MIR SINE MIR -113 149 77 952 146 157 5 chr11 141128160 141128345 -7655127 + AluJb SINE Alu 86 298 -14 250 282 28 0 chr11 141128834 141128905 -7654567 + GA-rich Low_complexity Low_complexity 5 77 0 1717 159 11 4 chr11 141128992 141129269 -7654203 - AluJo SINE Alu -22 290 12 324 300 91 0 chr11 141129527 141129637 -7653835 - L2 LINE L2 -2 3270 3151 360 335 132 13 chr11 141129657 141129884 -7653588 + MIR SINE MIR 8 261 -1 265 323 196 0 chr11 141131121 141131279 -7652193 + MIR SINE MIR 8 196 -66 236 266 0 53 chr11 141131517 141131611 -7651861 + GA-rich Low_complexity Low_complexity 3 91 0 270 344 57 16 chr11 141132753 141132875 -7650597 - MER91C DNA MER1_type -13 127 1 2145 266 149 22 chr11 141135962 141136867 -7646605 + L2 LINE L2 1939 2958 -356 279 325 73 20 chr11 141137405 141137556 -7645916 - L3 LINE CR1 -37 1540 1382 721 59 0 29 chr11 141137960 141138062 -7645410 + L1PA5 LINE L1 6055 6153 -1 225 65 0 0 chr11 141138099 141138130 -7645342 + (TAA)n Simple_repeat Simple_repeat 1 31 0 285 29 0 0 chr11 141138882 141138916 -7644556 + (CA)n Simple_repeat Simple_repeat 1 34 0 1232 226 136 24 chr11 141139212 141139695 -7643777 + MER74A LTR ERVL 20 622 0 393 269 74 9 chr11 141140370 141140478 -7642994 - L2 LINE L2 -1 3312 3198 2175 122 0 0 chr11 141140679 141140967 -7642505 + AluSx SINE Alu 1 288 -24 751 150 108 0 chr11 141143072 141143192 -7640280 + FLAM_A SINE Alu 1 133 0 771 186 12 5 chr11 141143552 141144011 -7639461 + (CA)n Simple_repeat Simple_repeat 1 462 0 399 309 135 4 chr11 141147670 141147929 -7635543 - L3b LINE CR1 -179 1404 1112 201 297 0 0 chr11 141150075 141150139 -7633333 - MIR3 SINE MIR -13 195 132 729 206 8 0 chr11 141151632 141151763 -7631709 + FLAM_A SINE Alu 1 132 -1 21 0 0 0 chr11 141153019 141153040 -7630432 + AT_rich Low_complexity Low_complexity 1 21 0 543 313 9 37 chr11 141153333 141153550 -7629922 - MIR SINE MIR 0 262 52 262 304 0 29 chr11 141153938 141154109 -7629363 + (CCCCAG)n Simple_repeat Simple_repeat 5 170 0 213 39 0 0 chr11 141154416 141154442 -7629030 + (TC)n Simple_repeat Simple_repeat 1 26 0 192 318 30 0 chr11 141154923 141154989 -7628483 - MIR SINE MIR -116 146 79 256 318 130 79 chr11 141155002 141155357 -7628115 - L2 LINE L2 -5 3267 2895 313 273 152 0 chr11 141156258 141156357 -7627115 + MIR SINE MIR 139 252 -10 180 108 270 0 chr11 141156325 141156362 -7627110 + L2 LINE L2 3257 3303 -10 * 2244 138 0 0 chr11 141156389 141156701 -7626771 + AluSx SINE Alu 1 312 0 353 271 19 19 chr11 141156860 141156967 -7626505 + MER5A DNA MER1_type 82 188 -1 247 195 218 11 chr11 141157923 141158010 -7625462 - MIR3 SINE MIR -11 197 93 838 311 88 18 chr11 141159851 141160304 -7623168 + L2 LINE L2 2825 3309 -4 2619 62 0 0 chr11 141160320 141160627 -7622845 - AluY SINE Alu -4 307 1 193 404 26 13 chr11 141160639 141160790 -7622682 - L3 LINE CR1 -149 1428 1276 430 260 24 8 chr11 141161350 141161473 -7621999 - L3 LINE CR1 -23 1554 1430 1787 173 3 20 chr11 141161773 141162074 -7621398 + AluJo SINE Alu 1 296 -16 334 246 167 56 chr11 141162406 141162532 -7620940 - L2 LINE L2 0 3272 3133 190 289 67 81 chr11 141162608 141162794 -7620678 + MIR3 SINE MIR 33 220 -39 204 337 155 10 chr11 141163158 141163351 -7620121 - L3b LINE CR1 -1 1582 1362 1234 162 0 87 chr11 141163359 141163612 -7619860 + AluJb SINE Alu 82 312 0 653 255 219 38 chr11 141163763 141164183 -7619289 - L3 LINE CR1 -70 1507 1012 1174 198 58 4 chr11 141164489 141164746 -7618726 + MER58B DNA MER1_type 71 341 0 22 0 0 0 chr11 141164905 141164927 -7618545 + AT_rich Low_complexity Low_complexity 1 22 0 830 120 8 0 chr11 141164927 141165044 -7618428 - FLAM_C SINE Alu -15 118 1 429 20 0 0 chr11 141166376 141166426 -7617046 + (CA)n Simple_repeat Simple_repeat 2 51 0 21 36 0 0 chr11 141166527 141166555 -7616917 + GC_rich Low_complexity Low_complexity 1 28 0 183 186 0 0 chr11 141166771 141166814 -7616658 + CT-rich Low_complexity Low_complexity 2 44 0 329 225 11 22 chr11 141166843 141166932 -7616540 + (CACG)n Simple_repeat Simple_repeat 1 88 0 301 317 192 6 chr11 141167606 141167773 -7615699 - MIR SINE MIR -50 212 15 378 271 53 11 chr11 141167870 141168004 -7615468 - MER5A DNA MER1_type -35 143 14 238 243 119 33 chr11 141168462 141168649 -7614823 + MIR SINE MIR 18 220 -42 2374 110 0 0 chr11 141168819 141169128 -7614344 + AluSx SINE Alu 1 309 -3 335 341 16 31 chr11 141169158 141169287 -7614185 + MIR SINE MIR 17 143 -65 252 289 209 32 chr11 141169345 141169532 -7613940 + MIR SINE MIR 16 235 -27 622 300 31 13 chr11 141169897 141170124 -7613348 - MIR SINE MIR -20 242 12 21 0 0 0 chr11 141170788 141170809 -7612663 + AT_rich Low_complexity Low_complexity 1 21 0 2185 123 3 0 chr11 141171072 141171364 -7612108 + AluSq SINE Alu 1 293 -20 2184 126 3 3 chr11 141171459 141171761 -7611711 + AluSx SINE Alu 3 304 -8 214 242 65 16 chr11 141171815 141171877 -7611595 - MIR SINE MIR -50 212 148 661 235 35 12 chr11 141171892 141172062 -7611410 + LTR41 LTR ERVL 10 183 -590 388 182 81 7 chr11 141172322 141172376 -7611096 + LTR50 LTR ERVL 636 685 -110 1756 154 0 68 chr11 141172376 141172700 -7610772 - AluJo SINE Alu -10 302 1 388 182 81 7 chr11 141172700 141172776 -7610696 + LTR50 LTR ERVL 685 795 0 325 307 182 11 chr11 141172863 141173039 -7610433 - MIR SINE MIR -17 245 40 527 252 172 0 chr11 141173961 141174112 -7609360 + MER5B DNA MER1_type 2 178 0 218 266 0 16 chr11 141174339 141174403 -7609069 - MIR SINE MIR -105 157 95 1853 91 142 14 chr11 141174579 141174854 -7608618 + AluSg SINE Alu 1 310 0 996 311 53 11 chr11 141175763 141176139 -7607333 + LTR16A LTR ERVL 32 423 -27 269 247 0 0 chr11 141176687 141176760 -7606712 + (TG)n Simple_repeat Simple_repeat 1 73 0 339 205 17 103 chr11 141177443 141177560 -7605912 + MIR3 SINE MIR 81 187 -21 2360 82 7 0 chr11 141177573 141177865 -7605607 - AluY SINE Alu -17 294 1 1478 221 4 7 chr11 141178219 141178491 -7604981 + AluJo SINE Alu 1 271 -41 576 77 0 0 chr11 141178740 141178818 -7604654 + (TG)n Simple_repeat Simple_repeat 2 79 0 301 362 163 30 chr11 141179208 141179669 -7603803 + L3 LINE CR1 924 1445 -132 261 326 22 0 chr11 141179925 141180014 -7603458 - L3 LINE CR1 -1 1576 1486 901 250 19 14 chr11 141181412 141181624 -7601848 - MIR SINE MIR -38 224 12 231 243 27 54 chr11 141181650 141181724 -7601748 + MER5B DNA MER1_type 106 177 -1 201 300 308 8 chr11 141181728 141181858 -7601614 - MER5A DNA MER1_type 0 189 21 201 220 266 28 chr11 141182758 141182867 -7600605 + MIR SINE MIR 14 148 -114 901 205 128 0 chr11 141183146 141183341 -7600131 - MER58A DNA MER1_type -4 220 1 2249 99 0 3 chr11 141184166 141184475 -7598997 + AluSq SINE Alu 1 308 0 207 294 59 78 chr11 141184479 141184632 -7598840 + L2 LINE L2 2941 3090 -223 195 218 0 103 chr11 141184928 141185015 -7598457 - MIR SINE MIR -32 230 153 271 306 41 48 chr11 141185519 141185813 -7597659 + L1ME LINE L1 5289 5580 -541 2036 83 4 8 chr11 141185865 141186162 -7597310 + AluSp SINE Alu 22 317 0 22 0 0 0 chr11 141186176 141186198 -7597274 + AT_rich Low_complexity Low_complexity 1 22 0 284 197 183 21 chr11 141186374 141186516 -7596956 + L1ME4a LINE L1 5956 6120 -1 220 313 0 25 chr11 141186646 141186726 -7596746 - L2 LINE L2 -2 3311 3234 1627 198 13 44 chr11 141186739 141187057 -7596415 + AluJb SINE Alu 1 308 -4 1756 176 4 0 chr11 141187498 141187790 -7595682 - AluJo SINE Alu 0 301 9 895 201 0 18 chr11 141187877 141188041 -7595431 - FRAM SINE Alu -16 160 1 1187 175 101 53 chr11 141188061 141188192 -7595280 + L1MB8 LINE L1 5801 5924 -254 1684 160 3 31 chr11 141188192 141188508 -7594964 + AluSx SINE Alu 3 310 0 1187 175 101 53 chr11 141188508 141188730 -7594742 + L1MB8 LINE L1 5924 6172 -6 234 189 158 72 chr11 141190143 141190287 -7593185 - MIR3 SINE MIR -30 178 20 507 242 0 152 chr11 141190556 141190663 -7592809 - MIR SINE MIR -21 241 119 180 0 0 0 chr11 141190663 141190683 -7592789 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 507 242 0 152 chr11 141190683 141190698 -7592774 - MIR SINE MIR -143 119 103 2003 154 0 0 chr11 141190698 141190984 -7592488 - AluSx SINE Alu -24 288 3 507 242 0 152 chr11 141190984 141191071 -7592401 - MIR SINE MIR -159 103 63 523 294 33 27 chr11 141191680 141191864 -7591608 + MIR SINE MIR 8 192 -70 2338 96 3 7 chr11 141192236 141192538 -7590934 - AluSq SINE Alu -12 301 1 2285 161 50 17 chr11 141192683 141193099 -7590373 + Tigger2a DNA MER2_type 5 434 0 544 280 97 11 chr11 141193210 141193385 -7590087 + MIR SINE MIR 12 201 -61 2015 154 0 0 chr11 141193392 141193677 -7589795 + AluSx SINE Alu 1 285 -27 1249 145 0 0 chr11 141193505 141193677 -7589795 + AluSg/x SINE Alu 112 322 0 206 51 51 0 chr11 141193677 141193716 -7589756 + A-rich Low_complexity Low_complexity 2 180 0 2152 98 0 4 chr11 141193848 141194125 -7589347 + AluSp SINE Alu 1 276 -37 1055 238 108 10 chr11 141194187 141194494 -7588978 - MER58B DNA MER1_type -1 340 4 334 338 20 14 chr11 141194659 141194807 -7588665 + MLT1I LTR MaLR 29 177 -232 2462 82 0 7 chr11 141195082 141195388 -7588084 + AluSp SINE Alu 1 304 -9 2403 97 0 10 chr11 141196438 141196749 -7586723 + AluSq SINE Alu 1 308 -5 501 327 43 24 chr11 141198169 141198377 -7585095 + MIR SINE MIR 9 220 -42 367 263 200 19 chr11 141198540 141198700 -7584772 + MIR SINE MIR 74 262 0 2025 132 4 0 chr11 141202485 141202806 -7580666 + AluSx SINE Alu 7 328 0 187 330 82 0 chr11 141202839 141202936 -7580536 + L2 LINE L2 3147 3251 -62 565 274 52 68 chr11 141203631 141203764 -7579708 - MIR SINE MIR -16 246 117 2366 108 0 0 chr11 141203764 141204069 -7579403 - AluSx SINE Alu -7 305 1 565 274 52 68 chr11 141204069 141204183 -7579289 - MIR SINE MIR -145 117 3 2164 129 10 0 chr11 141204500 141204803 -7578669 + AluSx SINE Alu 1 306 -6 702 283 111 21 chr11 141205522 141206215 -7577257 + L1ME3A LINE L1 5088 5842 -328 35 0 0 0 chr11 141206274 141206309 -7577163 + AT_rich Low_complexity Low_complexity 1 35 0 2078 134 6 25 chr11 141206311 141206625 -7576847 - AluJb SINE Alu 0 312 5 254 276 133 19 chr11 141207305 141207410 -7576062 + MIR3 SINE MIR 88 204 -4 506 264 102 35 chr11 141209479 141209676 -7573796 + MIR SINE MIR 9 218 -44 2260 116 0 0 chr11 141209898 141210190 -7573282 + AluSx SINE Alu 1 292 -20 2017 139 0 3 chr11 141211049 141211344 -7572128 + AluSx SINE Alu 1 294 -18 787 167 123 0 chr11 141211616 141211778 -7571694 - MER46A DNA MER2_type -52 184 3 324 348 84 26 chr11 141211781 141212054 -7571418 + L2 LINE L2 2257 2545 -769 610 263 19 38 chr11 141212128 141212288 -7571184 - L2 LINE L2 0 3272 3116 519 309 100 19 chr11 141212595 141212805 -7570667 - MIR SINE MIR -4 258 32 497 363 61 24 chr11 141212817 141213112 -7570360 + L2 LINE L2 2964 3269 -3 1984 145 27 0 chr11 141213168 141213464 -7570008 + AluJo SINE Alu 7 310 -2 999 92 6 18 chr11 141213473 141213637 -7569835 + (GGAA)n Simple_repeat Simple_repeat 3 164 0 241 267 13 13 chr11 141214175 141214250 -7569222 - Charlie4 DNA MER1_type -5 1956 1882 198 0 0 0 chr11 141214391 141214413 -7569059 + (A)n Simple_repeat Simple_repeat 1 22 0 2302 98 0 26 chr11 141214547 141214854 -7568618 - AluSx SINE Alu -13 299 1 3610 174 30 1 chr11 141214854 141215514 -7567958 - L1MB2 LINE L1 -45 6126 5448 1178 189 26 73 chr11 141215723 141216066 -7567406 + MLT1A2 LTR MaLR 6 332 -42 244 258 0 0 chr11 141216086 141216175 -7567297 - L1MC4 LINE L1 -1340 6702 6614 230 267 0 0 chr11 141216097 141216187 -7567285 + L1MC4 LINE L1 6614 6703 -1339 * 2260 89 0 0 chr11 141216204 141216484 -7566988 - AluSg SINE Alu -30 280 1 8075 123 12 3 chr11 141218349 141219655 -7563817 - L1P LINE L1 -771 5375 4058 537 234 35 7 chr11 141219675 141219820 -7563652 - MIR SINE MIR 0 262 114 492 269 8 50 chr11 141220207 141220326 -7563146 + MIR3 SINE MIR 13 126 -82 2062 153 0 0 chr11 141220328 141220628 -7562844 - AluSx SINE Alu -12 300 1 399 280 127 0 chr11 141220705 141220823 -7562649 - MIR SINE MIR -72 190 58 268 299 232 23 chr11 141223093 141223270 -7560202 + MIR SINE MIR 48 261 -1 234 263 32 0 chr11 141223298 141223331 -7560141 + A-rich Low_complexity Low_complexity 4 34 -67 2034 158 0 16 chr11 141223331 141223648 -7559824 + AluJb SINE Alu 1 312 0 234 263 32 0 chr11 141223648 141223709 -7559763 + A-rich Low_complexity Low_complexity 34 101 0 2411 86 3 0 chr11 141224475 141224778 -7558694 - AluY SINE Alu -7 304 1 202 300 134 27 chr11 141224898 141225121 -7558351 + L2 LINE L2 2094 2340 -974 1485 85 5 0 chr11 141225226 141225415 -7558057 - AluY SINE Alu -121 190 1 251 283 19 66 chr11 141225523 141225629 -7557843 + L2 LINE L2 3171 3271 -1 276 382 0 0 chr11 141226375 141226485 -7556987 + MIR SINE MIR 30 139 -69 249 275 58 0 chr11 141228232 141228301 -7555171 - MIR SINE MIR -113 149 77 928 151 157 5 chr11 141228546 141228731 -7554741 + AluJb SINE Alu 86 298 -14 250 282 28 0 chr11 141229220 141229291 -7554181 + GA-rich Low_complexity Low_complexity 5 77 0 1717 159 11 4 chr11 141229378 141229655 -7553817 - AluJo SINE Alu -22 290 12 366 319 62 0 chr11 141229913 141230026 -7553446 - L2 LINE L2 -2 3270 3151 360 335 132 13 chr11 141230046 141230273 -7553199 + MIR SINE MIR 8 261 -1 265 323 196 0 chr11 141231509 141231667 -7551805 + MIR SINE MIR 8 196 -66 236 266 0 53 chr11 141231905 141231999 -7551473 + GA-rich Low_complexity Low_complexity 3 91 0 270 344 57 16 chr11 141233141 141233263 -7550209 - MER91C DNA MER1_type -13 127 1 2182 265 148 22 chr11 141236350 141237256 -7546216 + L2 LINE L2 1939 2958 -356 279 325 73 20 chr11 141237796 141237947 -7545525 - L3 LINE CR1 -37 1540 1382 721 59 0 29 chr11 141238351 141238453 -7545019 + L1PA5 LINE L1 6055 6153 -1 225 65 0 0 chr11 141238490 141238521 -7544951 + (TAA)n Simple_repeat Simple_repeat 1 31 0 285 29 0 0 chr11 141239273 141239307 -7544165 + (CA)n Simple_repeat Simple_repeat 1 34 0 590 114 0 0 chr11 141239421 141239500 -7543972 - AluJ/FRAM SINE Alu -13 299 221 1275 226 144 23 chr11 141239570 141240066 -7543406 + MER74A LTR ERVL 1 622 0 393 269 74 9 chr11 141240741 141240849 -7542623 - L2 LINE L2 -1 3312 3198 2175 122 0 0 chr11 141241050 141241338 -7542134 + AluSx SINE Alu 1 288 -24 254 184 94 1 chr11 141243431 141243675 -7539797 + AluJo SINE Alu 1 298 -4 215 77 0 26 chr11 141244067 141244106 -7539366 + (CAAAAA)n Simple_repeat Simple_repeat 3 40 0 221 294 130 41 chr11 141244127 141244273 -7539199 + L2 LINE L2 218 376 -2938 260 263 195 47 chr11 141244394 141244584 -7538888 - MIR SINE MIR -42 220 3 227 239 87 54 chr11 141244982 141245074 -7538398 - MIR3 SINE MIR -27 181 87 311 290 33 117 chr11 141245158 141245212 -7538260 - MIR3 SINE MIR -3 205 148 2057 75 10 45 chr11 141245212 141245520 -7537952 + AluSp SINE Alu 1 297 -16 311 290 33 117 chr11 141245520 141245679 -7537793 - MIR3 SINE MIR -60 148 10 230 301 75 0 chr11 141247315 141247408 -7536064 - MIR3 SINE MIR -45 163 64 2181 85 0 0 chr11 141247541 141247856 -7535616 - AluSx SINE Alu 0 315 1 26 0 0 0 chr11 141247871 141247897 -7535575 + AT_rich Low_complexity Low_complexity 1 26 0 309 164 16 0 chr11 141248369 141248430 -7535042 - MIR SINE MIR -105 157 96 219 217 0 0 chr11 141250189 141250235 -7533237 + GA-rich Low_complexity Low_complexity 1 46 0 1795 133 36 0 chr11 141251044 141251168 -7532304 + AluSx SINE Alu 1 119 -193 261 0 0 0 chr11 141251168 141251197 -7532275 + (TA)n Simple_repeat Simple_repeat 1 29 0 1795 133 36 0 chr11 141251197 141251351 -7532121 + AluSx SINE Alu 119 289 -23 1493 112 101 112 chr11 141251618 141251976 -7531496 + MER46B DNA MER2_type 1 229 -7 309 160 0 64 chr11 141256389 141256483 -7526989 + C-rich Low_complexity Low_complexity 1 88 0 233 329 0 13 chr11 141257094 141257170 -7526302 + L3 LINE CR1 1499 1573 -4 771 191 9 5 chr11 141257409 141257849 -7525623 + (CA)n Simple_repeat Simple_repeat 1 442 0 314 208 0 14 chr11 141260245 141260317 -7523155 - MIR3 SINE MIR -34 174 104 395 317 135 4 chr11 141261413 141261672 -7521800 - L3b LINE CR1 -179 1404 1112 193 297 0 0 chr11 141263818 141263882 -7519590 - MIR3 SINE MIR -13 195 132 728 206 8 0 chr11 141265377 141265508 -7517964 + FLAM_A SINE Alu 1 132 -1 229 343 144 17 chr11 141266142 141266559 -7516913 + L2 LINE L2 2316 2785 -529 216 0 0 0 chr11 141266757 141266781 -7516691 + (T)n Simple_repeat Simple_repeat 1 24 0 512 327 5 32 chr11 141267078 141267295 -7516177 - MIR SINE MIR 0 262 52 210 307 0 29 chr11 141267683 141267823 -7515649 + (CCCCAG)n Simple_repeat Simple_repeat 5 140 0 213 39 0 0 chr11 141268130 141268156 -7515316 + (TC)n Simple_repeat Simple_repeat 1 26 0 183 318 30 0 chr11 141268637 141268703 -7514769 - MIR SINE MIR -116 146 79 228 364 144 17 chr11 141268716 141269007 -7514465 - L2 LINE L2 -5 3267 2940 285 273 152 0 chr11 141269972 141270071 -7513401 + MIR SINE MIR 139 252 -10 2115 138 0 0 chr11 141270103 141270415 -7513057 + AluSx SINE Alu 1 312 0 334 271 19 19 chr11 141270574 141270681 -7512791 + MER5A DNA MER1_type 82 188 -1 232 204 204 11 chr11 141271636 141271724 -7511748 - MIR3 SINE MIR -11 197 93 792 314 88 18 chr11 141273565 141274018 -7509454 + L2 LINE L2 2825 3309 -4 2490 65 0 0 chr11 141274032 141274341 -7509131 - AluY SINE Alu -2 309 1 187 404 26 13 chr11 141274353 141274504 -7508968 - L3 LINE CR1 -149 1428 1276 421 260 24 8 chr11 141275064 141275187 -7508285 - L3 LINE CR1 -23 1554 1430 1368 224 3 33 chr11 141275487 141275790 -7507682 + AluJo SINE Alu 1 294 -8 309 262 167 56 chr11 141276124 141276250 -7507222 - L2 LINE L2 0 3272 3133 191 373 145 0 chr11 141276876 141277069 -7506403 - L3b LINE CR1 -1 1582 1362 1152 162 0 87 chr11 141277077 141277330 -7506142 + AluJb SINE Alu 82 312 0 584 269 214 33 chr11 141277481 141277901 -7505571 - L3 LINE CR1 -70 1507 1012 1206 198 58 4 chr11 141278207 141278464 -7505008 + MER58B DNA MER1_type 71 341 0 22 0 0 0 chr11 141278623 141278645 -7504827 + AT_rich Low_complexity Low_complexity 1 22 0 822 120 8 0 chr11 141278645 141278762 -7504710 - FLAM_C SINE Alu -15 118 1 468 0 0 0 chr11 141280094 141280146 -7503326 + (CA)n Simple_repeat Simple_repeat 2 53 0 183 186 0 0 chr11 141280500 141280543 -7502929 + CT-rich Low_complexity Low_complexity 2 44 0 329 225 11 22 chr11 141280572 141280661 -7502811 + (CACG)n Simple_repeat Simple_repeat 1 88 0 278 317 192 6 chr11 141281340 141281507 -7501965 - MIR SINE MIR -50 212 15 362 260 39 0 chr11 141281634 141281738 -7501734 - MER5A DNA MER1_type -68 121 14 216 214 58 68 chr11 141282280 141282383 -7501089 + MIR SINE MIR 119 220 -42 1979 130 0 0 chr11 141282553 141282838 -7500634 + AluSx SINE Alu 1 285 -27 204 226 0 0 chr11 141282975 141283037 -7500435 + G-rich Low_complexity Low_complexity 1 62 0 234 136 0 0 chr11 141283153 141283197 -7500275 + (G)n Simple_repeat Simple_repeat 1 44 0 237 288 7 72 chr11 141283211 141283350 -7500122 + G-rich Low_complexity Low_complexity 3 132 0 821 208 7 0 chr11 141283408 141283572 -7499900 + AluJb SINE Alu 137 301 0 1500 201 13 44 chr11 141284013 141284331 -7499141 - AluJb SINE Alu -4 308 1 205 313 0 25 chr11 141284344 141284424 -7499048 + L2 LINE L2 3234 3311 -2 487 229 213 16 chr11 141284554 141284737 -7498735 - L1ME4a LINE L1 -1 6120 5902 207 363 18 18 chr11 141284953 141285124 -7498348 + CT-rich Low_complexity Low_complexity 5 175 0 * 228 368 0 31 chr11 141285032 141285195 -7498277 + C-rich Low_complexity Low_complexity 3 160 0 198 0 0 0 chr11 141286139 141286161 -7497311 + (GAAA)n Simple_repeat Simple_repeat 2 23 0 807 218 6 24 chr11 141286821 141286991 -7496481 - AluJo SINE Alu -137 175 9 826 207 0 18 chr11 141287077 141287241 -7496231 - FRAM SINE Alu -16 160 1 402 209 78 8 chr11 141287262 141287391 -7496081 + L1MB5 LINE L1 5801 5938 -246 259 234 91 0 chr11 141337969 141338046 -7445426 + MIR SINE MIR 63 146 -116 217 313 12 12 chr11 141338143 141338223 -7445249 + MIR SINE MIR 36 115 -93 21 36 0 0 chr11 141338294 141338322 -7445150 + AT_rich Low_complexity Low_complexity 1 28 0 1606 178 0 45 chr11 141338995 141339180 -7444292 + AluJo SINE Alu 1 168 -144 3463 124 14 68 chr11 141339180 141339208 -7444264 + LTR9 LTR ERV1 1 29 -583 2345 88 3 0 chr11 141339208 141339504 -7443968 + AluSq SINE Alu 5 301 -12 3463 124 14 68 chr11 141339504 141340122 -7443350 + LTR9 LTR ERV1 29 612 0 1606 178 0 45 chr11 141340122 141340245 -7443227 + AluJo SINE Alu 168 295 -17 1583 138 145 7 chr11 141340312 141340581 -7442891 - AluSg1 SINE Alu -2 307 2 210 369 47 7 chr11 141340661 141340810 -7442662 + MER5B DNA MER1_type 24 178 0 199 244 71 77 chr11 141340902 141341070 -7442402 + L2 LINE L2 1894 2060 -1254 461 240 40 56 chr11 141341141 141341266 -7442206 - L2 LINE L2 -3 3310 3188 239 188 25 75 chr11 141341422 141341502 -7441970 + L2 LINE L2 2163 2238 -1076 884 186 116 0 chr11 141341528 141341700 -7441772 - MER3 DNA MER1_type -17 192 1 358 304 89 18 chr11 141341703 141341871 -7441601 + MIR SINE MIR 34 213 -49 1092 99 0 0 chr11 141341924 141342066 -7441406 + AluSg/x SINE Alu 169 310 0 702 239 0 0 chr11 141342082 141342220 -7441252 + FLAM_C SINE Alu 2 139 -4 661 128 34 20 chr11 141342741 141342889 -7440583 + GA-rich Low_complexity Low_complexity 3 152 0 194 269 0 30 chr11 141342942 141343009 -7440463 + L2 LINE L2 2311 2375 -939 532 329 54 18 chr11 141343053 141343445 -7440027 + L2 LINE L2 2486 2891 -423 231 217 17 17 chr11 141343565 141343625 -7439847 + MIR SINE MIR 132 191 -71 1952 145 3 10 chr11 141343750 141344054 -7439418 - AluJb SINE Alu -10 302 1 234 196 0 0 chr11 141344186 141344232 -7439240 + L2 LINE L2 3261 3306 -7 2200 109 10 3 chr11 141344404 141344706 -7438766 + AluSc SINE Alu 1 304 -5 358 145 40 0 chr11 141344706 141344782 -7438690 + GA-rich Low_complexity Low_complexity 1 79 0 189 0 0 0 chr11 141345149 141345170 -7438302 + (A)n Simple_repeat Simple_repeat 1 21 0 840 129 0 0 chr11 141345248 141345364 -7438108 - FLAM_C SINE Alu -27 116 1 1069 70 11 38 chr11 141346062 141346247 -7437225 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2000 149 7 0 chr11 141346263 141346571 -7436901 - AluSx SINE Alu -2 310 1 2375 86 3 10 chr11 141346772 141347075 -7436397 - AluSq SINE Alu -7 306 6 432 344 43 54 chr11 141347316 141347872 -7435600 + L2 LINE L2 2063 2612 -702 333 212 91 91 chr11 141347859 141347991 -7435481 - MER5B DNA MER1_type -12 166 35 * 580 289 133 0 chr11 141348035 141348215 -7435257 + MER63A DNA MER1_type 7 210 0 219 69 0 0 chr11 141348225 141348254 -7435218 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1572 152 0 4 chr11 141348271 141348534 -7434938 - AluJo SINE Alu -40 272 11 1897 125 0 14 chr11 141349252 141349567 -7433905 + AluSx SINE Alu 1 311 0 1929 29 0 25 chr11 141349661 141349899 -7433573 - SVA Other Other 0 1386 1155 2310 80 0 3 chr11 141350299 141350601 -7432871 + AluY SINE Alu 1 301 -10 2226 93 0 6 chr11 141350659 141350971 -7432501 + AluSq SINE Alu 1 310 -3 1865 157 3 0 chr11 141353011 141353310 -7430162 + AluSq SINE Alu 1 300 -13 1792 228 50 30 chr11 141353997 141354457 -7429015 + MLT2B2 LTR ERVL 1 469 -46 1769 164 7 3 chr11 141354551 141354856 -7428616 + AluJo SINE Alu 1 306 -6 425 340 58 16 chr11 141354878 141355069 -7428403 + MIR3 SINE MIR 4 202 -6 400 299 31 67 chr11 141355368 141355427 -7428045 - MIR3 SINE MIR -5 203 143 1517 146 0 88 chr11 141355427 141355618 -7427854 - AluJb SINE Alu 0 310 157 2186 119 0 0 chr11 141355618 141355929 -7427543 - AluSx SINE Alu -1 311 1 1517 146 0 88 chr11 141355929 141356074 -7427398 - AluJb SINE Alu -153 157 1 400 299 31 67 chr11 141356074 141356206 -7427266 - MIR3 SINE MIR -65 143 17 1986 94 7 18 chr11 141356362 141356679 -7426793 - AluSx SINE Alu 0 314 1 395 217 33 142 chr11 141356682 141356894 -7426578 - L2 LINE L2 -24 3289 3101 326 266 78 16 chr11 141356881 141357009 -7426463 - MIR SINE MIR -125 137 2 * 712 127 14 99 chr11 141357140 141357282 -7426190 + FLAM_C SINE Alu 1 130 -3 234 330 11 11 chr11 141358341 141358432 -7425040 - MIR SINE MIR -61 201 111 318 266 26 71 chr11 141358922 141358951 -7424521 - L1MC4 LINE L1 -1327 6715 6686 1989 128 7 0 chr11 141358951 141359240 -7424232 + AluSx SINE Alu 2 292 -20 318 266 26 71 chr11 141359240 141359323 -7424149 - L1MC4 LINE L1 -1356 6686 6608 2164 106 0 0 chr11 141359911 141360203 -7423269 - AluSx SINE Alu -20 292 1 1536 197 0 0 chr11 141360433 141360702 -7422770 + AluJo SINE Alu 1 269 -43 224 336 119 8 chr11 141361147 141361281 -7422191 + MIR SINE MIR 53 201 -61 411 242 94 39 chr11 141362053 141362181 -7421291 + L2 LINE L2 3171 3305 -8 1788 154 0 30 chr11 141362547 141362852 -7420620 + AluJo SINE Alu 4 299 -13 353 205 307 16 chr11 141362852 141362979 -7420493 + AluJb SINE Alu 137 300 -2 310 254 58 72 chr11 141363211 141363349 -7420123 - L2 LINE L2 0 3313 3178 327 286 176 33 chr11 141363832 141364042 -7419430 - L2 LINE L2 -923 2391 2152 1597 135 135 0 chr11 141364048 141364314 -7419158 + AluSx SINE Alu 1 302 0 229 343 0 0 chr11 141364321 141364391 -7419081 + GA-rich Low_complexity Low_complexity 3 72 0 733 172 0 0 chr11 141364399 141364515 -7418957 + FLAM_C SINE Alu 2 117 -26 370 258 31 62 chr11 141364906 141365034 -7418438 - MIR SINE MIR -116 146 23 240 291 0 0 chr11 141365189 141365244 -7418228 + MIR SINE MIR 43 97 -111 245 81 65 32 chr11 141365582 141365644 -7417828 + CT-rich Low_complexity Low_complexity 2 65 0 794 182 0 0 chr11 141365646 141365778 -7417694 - FLAM_A SINE Alu -1 132 1 279 274 0 14 chr11 141365783 141365856 -7417616 + L2 LINE L2 3234 3305 -8 2092 119 0 0 chr11 141366101 141366404 -7417068 + AluSx SINE Alu 1 303 -9 363 303 62 49 chr11 141366544 141366706 -7416766 + L3b LINE CR1 1288 1451 -132 1975 121 6 13 chr11 141366719 141367033 -7416439 - AluSx SINE Alu 0 312 1 445 231 22 76 chr11 141367461 141367890 -7415582 + MER21B LTR ERV1 6 425 -438 988 163 21 21 chr11 141367890 141368080 -7415392 + MER4D LTR ERV1 1 190 -682 775 189 126 0 chr11 141368081 141368224 -7415248 - AluJb SINE Alu -18 294 134 3701 142 12 59 chr11 141368276 141368686 -7414786 + MER4E LTR ERV1 131 498 -281 2074 96 6 59 chr11 141368686 141369009 -7414463 + AluSg SINE Alu 1 306 -4 3701 142 12 59 chr11 141369009 141369279 -7414193 + MER4E LTR ERV1 498 779 0 1822 159 62 117 chr11 141369279 141369377 -7414095 + MER21B LTR ERV1 422 524 -339 3386 106 81 14 chr11 141369377 141369773 -7413699 + MER41A LTR ERV1 1 442 -112 2048 137 3 0 chr11 141369773 141370079 -7413393 - AluSx SINE Alu -5 307 1 3386 106 81 14 chr11 141370079 141370201 -7413271 + MER41A LTR ERV1 442 554 0 1822 159 62 117 chr11 141370201 141370555 -7412917 + MER21B LTR ERV1 524 849 -14 251 167 0 0 chr11 141370707 141370749 -7412723 + MSTB LTR MaLR 1 42 -384 1565 189 0 44 chr11 141370750 141371067 -7412405 - AluJb SINE Alu -9 303 1 816 139 7 28 chr11 141371067 141371211 -7412261 - AluJo SINE Alu -171 141 1 1829 210 47 18 chr11 141371213 141371425 -7412047 + MSTB LTR MaLR 35 264 -162 2253 115 72 26 chr11 141371425 141371773 -7411699 - THE1B LTR MaLR 0 364 1 1829 210 47 18 chr11 141371773 141371941 -7411531 + MSTB LTR MaLR 264 426 0 2017 116 7 0 chr11 141372044 141372338 -7411134 - AluSx SINE Alu -16 296 1 397 266 164 34 chr11 141374228 141374441 -7409031 + MIR SINE MIR 3 237 -25 3409 28 0 0 chr11 141375414 141375810 -7407662 + L1PA4 LINE L1 5756 6151 -4 2234 99 0 0 chr11 141376326 141376628 -7406844 + AluSg SINE Alu 1 302 -8 206 328 30 15 chr11 141377498 141377565 -7405907 + L3b LINE CR1 1511 1578 -5 220 260 187 57 chr11 141377774 141377897 -7405575 - L3 LINE CR1 -3 1574 1436 1181 169 132 29 chr11 141377903 141377969 -7405503 + Tigger7 DNA MER2_type 1 59 -2428 1465 198 17 3 chr11 141377969 141378267 -7405205 + AluJb SINE Alu 9 310 -2 1181 169 132 29 chr11 141378267 141378442 -7405030 + Tigger7 DNA MER2_type 59 267 -2220 1002 302 104 77 chr11 141378456 141378612 -7404860 - L3 LINE CR1 -178 1399 1249 1744 124 12 0 chr11 141378612 141378861 -7404611 - AluSx SINE Alu -50 262 11 1002 302 104 77 chr11 141378861 141379250 -7404222 - L3 LINE CR1 -328 1249 820 2010 126 3 19 chr11 141379250 141379567 -7403905 + AluSx SINE Alu 1 312 0 1002 302 104 77 chr11 141379567 141379878 -7403594 - L3 LINE CR1 -757 820 519 207 0 0 0 chr11 141380169 141380192 -7403280 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1857 136 4 0 chr11 141380195 141380475 -7402997 - AluSx SINE Alu -31 281 1 24 0 0 0 chr11 141381619 141381643 -7401829 + AT_rich Low_complexity Low_complexity 1 24 0 1395 190 25 85 chr11 141381658 141382021 -7401451 + MER58B DNA MER1_type 1 341 0 1116 164 21 0 chr11 141383337 141383526 -7399946 + AluJo SINE Alu 3 195 -117 517 147 0 55 chr11 141383526 141383555 -7399917 + (GGAAA)n Simple_repeat Simple_repeat 5 34 -124 1919 99 6 59 chr11 141383555 141383877 -7399595 + AluSx SINE Alu 1 305 -7 517 147 0 55 chr11 141383877 141384010 -7399462 + (GGAAA)n Simple_repeat Simple_repeat 34 158 0 25 0 0 0 chr11 141384110 141384135 -7399337 + GC_rich Low_complexity Low_complexity 1 25 0 198 0 0 0 chr11 141384156 141384178 -7399294 + (A)n Simple_repeat Simple_repeat 1 22 0 675 164 20 33 chr11 141384182 141384334 -7399138 + L1MB8 LINE L1 6028 6177 -1 215 161 18 0 chr11 141384695 141384751 -7398721 + (CAAA)n Simple_repeat Simple_repeat 4 60 0 321 336 30 45 chr11 141385160 141385294 -7398178 - MIR3 SINE MIR -62 146 15 1949 141 3 0 chr11 141385318 141385609 -7397863 - AluSx SINE Alu -20 292 1 183 261 101 29 chr11 141385757 141385826 -7397646 + MIR SINE MIR 2 75 -187 2163 111 0 0 chr11 141385861 141386168 -7397304 - AluSx SINE Alu -5 307 1 351 78 0 0 chr11 141386389 141386440 -7397032 + (CA)n Simple_repeat Simple_repeat 1 51 0 730 186 86 0 chr11 141386464 141386604 -7396868 - FAM SINE Alu -33 152 1 2049 89 0 74 chr11 141386718 141387044 -7396428 - AluSq SINE Alu -11 302 1 2031 129 3 0 chr11 141387543 141387838 -7395634 - AluSx SINE Alu -14 298 3 541 258 36 42 chr11 141388489 141388656 -7394816 + MIR SINE MIR 97 262 0 203 233 0 0 chr11 141388900 141388943 -7394529 + G-rich Low_complexity Low_complexity 3 45 0 260 210 48 16 chr11 141389337 141389399 -7394073 + CT-rich Low_complexity Low_complexity 6 69 0 304 127 48 0 chr11 141389424 141389487 -7393985 + GA-rich Low_complexity Low_complexity 3 68 0 181 338 108 29 chr11 141389876 141390080 -7393392 - L2 LINE L2 -37 3235 3016 2245 92 14 0 chr11 141390224 141390519 -7392953 + AluSx SINE Alu 1 299 -13 220 291 57 64 chr11 141390877 141391018 -7392454 + L3b LINE CR1 1105 1244 -339 189 0 0 0 chr11 141392802 141392823 -7390649 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1725 163 0 3 chr11 141392826 141393109 -7390363 - AluJo SINE Alu -30 282 1 357 239 17 103 chr11 141394634 141394751 -7388721 - MIR SINE MIR -123 139 33 344 302 38 38 chr11 141395611 141395770 -7387702 + L3b LINE CR1 1318 1476 -107 797 299 41 16 chr11 141396785 141397029 -7386443 + MIR SINE MIR 12 261 -1 837 173 0 15 chr11 141397536 141397669 -7385803 - FLAM_C SINE Alu -2 131 1 210 71 0 0 chr11 141397736 141397764 -7385708 + (T)n Simple_repeat Simple_repeat 1 28 0 213 351 27 27 chr11 141397771 141397882 -7385590 - L2 LINE L2 -584 2730 2620 434 352 82 17 chr11 141398072 141398305 -7385167 - MIR SINE MIR -12 250 3 343 311 51 38 chr11 141398309 141398544 -7384928 - L2 LINE L2 -1328 1986 1749 184 292 31 15 chr11 141398551 141398616 -7384856 - L2 LINE L2 -14 3299 3234 326 141 0 16 chr11 141398645 141398709 -7384763 + (GGAGA)n Simple_repeat Simple_repeat 5 67 0 225 0 0 0 chr11 141398751 141398776 -7384696 + (TG)n Simple_repeat Simple_repeat 2 26 0 233 365 41 28 chr11 141399177 141399322 -7384150 - L2 LINE L2 -220 3052 2906 285 56 0 0 chr11 141399322 141399358 -7384114 + U2 snRNA snRNA 1 36 -152 224 224 80 18 chr11 141400454 141400548 -7382924 - MIR SINE MIR -46 162 58 481 244 199 6 chr11 141401123 141401279 -7382193 - MIR SINE MIR -71 191 6 210 231 0 0 chr11 141402228 141402267 -7381205 + polypyrimidine Low_complexity Low_complexity 1 39 0 441 0 0 0 chr11 141402270 141402319 -7381153 + (CA)n Simple_repeat Simple_repeat 1 49 0 1890 152 13 10 chr11 141402359 141402668 -7380804 - AluJo SINE Alu 0 312 3 216 224 0 20 chr11 141402758 141402807 -7380665 + L3 LINE CR1 1519 1566 -11 185 368 60 38 chr11 141403602 141403735 -7379737 - L3b LINE CR1 -35 1548 1413 1024 173 0 23 chr11 141403957 141404130 -7379342 + AluJo SINE Alu 5 173 -139 1455 153 9 0 chr11 141404135 141404363 -7379109 - AluSx SINE Alu -82 230 1 340 224 0 0 chr11 141404365 141404450 -7379022 - L1MA4 LINE L1 -3 6297 6213 2245 120 0 0 chr11 141404624 141404925 -7378547 - AluSg SINE Alu -9 301 1 641 265 81 19 chr11 141405017 141405228 -7378244 + MIR SINE MIR 25 248 -14 2496 84 0 0 chr11 141406617 141406957 -7376515 + AluSc SINE Alu 1 340 0 2034 134 10 7 chr11 141407183 141407489 -7375983 - AluJb SINE Alu -2 310 4 208 313 52 0 chr11 141407518 141407614 -7375858 - L2 LINE L2 -1903 1411 1311 349 333 61 14 chr11 141409187 141409334 -7374138 - MIR3 SINE MIR -32 176 23 2017 151 3 0 chr11 141409710 141410015 -7373457 + AluSx SINE Alu 1 306 -6 691 294 46 13 chr11 141411878 141412116 -7371356 - MIR SINE MIR -14 248 3 810 147 0 23 chr11 141412134 141412263 -7371209 + FLAM_A SINE Alu 6 131 -11 195 80 0 0 chr11 141412722 141412747 -7370725 - L2 LINE L2 -14 3258 3234 337 341 16 8 chr11 141414994 141415117 -7368355 - MIR SINE MIR -119 143 20 372 288 174 0 chr11 141415142 141415274 -7368198 + MIR3 SINE MIR 33 187 -21 242 203 17 17 chr11 141415292 141415351 -7368121 - L1 LINE L1 -891 5255 5197 30 27 0 0 chr11 141415664 141415701 -7367771 + AT_rich Low_complexity Low_complexity 1 37 0 388 301 63 19 chr11 141416048 141416254 -7367218 - L3 LINE CR1 -1 1576 1362 3129 185 46 12 chr11 141416298 141417178 -7366294 - L1MB7 LINE L1 -282 5902 4997 25 0 0 0 chr11 141419043 141419068 -7364404 + AT_rich Low_complexity Low_complexity 1 25 0 498 229 16 8 chr11 141419521 141419643 -7363829 - LTR33 LTR ERVL -7 514 392 671 270 48 13 chr11 141419658 141419888 -7363584 - LTR33 LTR ERVL -235 286 49 279 0 0 0 chr11 141420058 141420089 -7363383 + (TC)n Simple_repeat Simple_repeat 1 31 0 558 299 24 60 chr11 141420147 141420420 -7363052 + MIR SINE MIR 2 262 0 217 330 42 102 chr11 141420427 141420642 -7362830 + L2 LINE L2 1546 1772 -1542 198 71 0 0 chr11 141420642 141420670 -7362802 + (TA)n Simple_repeat Simple_repeat 2 29 0 217 330 42 102 chr11 141420670 141420713 -7362759 + L2 LINE L2 1772 1816 -1498 2262 123 3 0 chr11 141420713 141421022 -7362450 - AluSx SINE Alu -2 310 1 217 330 42 102 chr11 141421022 141421304 -7362168 + L2 LINE L2 1816 2055 -1259 394 271 65 39 chr11 141421384 141421539 -7361933 + L2 LINE L2 3155 3313 0 992 208 82 5 chr11 141421639 141421846 -7361626 - MER58A DNA MER1_type 0 224 2 230 362 96 25 chr11 141422300 141422582 -7360890 + L2 LINE L2 2882 3183 -89 507 264 56 45 chr11 141422883 141423061 -7360411 + MIR SINE MIR 24 203 -59 2237 109 0 35 chr11 141423288 141423600 -7359872 - AluSx SINE Alu -11 301 1 423 98 0 0 chr11 141424681 141424742 -7358730 + (A)n Simple_repeat Simple_repeat 1 61 0 279 292 208 63 chr11 141425010 141425294 -7358178 - L2 LINE L2 -1 3312 2988 437 274 32 8 chr11 141425295 141425419 -7358053 + MIR SINE MIR 129 255 -7 224 54 0 27 chr11 141425438 141425457 -7358015 + (ATG)n Simple_repeat Simple_repeat 1 20 -16 2249 118 0 0 chr11 141425457 141425753 -7357719 + AluSx SINE Alu 1 296 -16 224 54 0 27 chr11 141425753 141425770 -7357702 + (ATG)n Simple_repeat Simple_repeat 20 36 0 2296 102 0 0 chr11 141426722 141427016 -7356456 + AluSq SINE Alu 1 294 -19 321 323 0 0 chr11 141427138 141427237 -7356235 + L1ME LINE L1 5547 5645 -476 570 293 40 55 chr11 141427240 141427493 -7355979 + MIR SINE MIR 14 262 0 235 217 33 0 chr11 141427729 141427789 -7355683 + (TA)n Simple_repeat Simple_repeat 1 62 0 22 56 0 0 chr11 141427841 141427877 -7355595 + AT_rich Low_complexity Low_complexity 1 36 0 1469 149 33 8 chr11 141427896 141428137 -7355335 + AluJb SINE Alu 42 288 -24 246 300 210 0 chr11 141428398 141428498 -7354974 - L2 LINE L2 -14 3299 3179 2523 61 0 0 chr11 141428501 141428797 -7354675 + AluY SINE Alu 2 297 -14 252 252 8 92 chr11 141428934 141429053 -7354419 - MIR3 SINE MIR -93 115 7 351 44 15 59 chr11 141429541 141429609 -7353863 + (TTTTTG)n Simple_repeat Simple_repeat 2 66 0 285 276 112 0 chr11 141430504 141430602 -7352870 - MIR SINE MIR -119 143 35 239 299 68 17 chr11 141431923 141432040 -7351432 + L2 LINE L2 3150 3272 0 402 236 104 9 chr11 141432827 141432933 -7350539 + L2 LINE L2 3198 3313 0 215 309 43 50 chr11 141432931 141433070 -7350402 + L3b LINE CR1 1348 1485 -98 * 384 290 103 19 chr11 141433072 141433227 -7350245 - MIR3 SINE MIR -7 201 34 2242 103 0 0 chr11 141433252 141433544 -7349928 + AluSg SINE Alu 1 292 -18 1319 107 269 8 chr11 141433553 141433787 -7349685 + AluSg1 SINE Alu 1 295 -14 330 229 68 107 chr11 141433801 141434006 -7349466 + MER112 DNA MER1_type 17 213 -47 282 56 0 0 chr11 141434583 141434619 -7348853 + (CA)n Simple_repeat Simple_repeat 1 36 0 207 69 0 0 chr11 141434697 141434726 -7348746 + (TC)n Simple_repeat Simple_repeat 2 30 0 377 291 51 0 chr11 141435178 141435295 -7348177 + MIR3 SINE MIR 34 156 -52 1287 287 36 33 chr11 141435330 141435880 -7347592 + L1MC5 LINE L1 6980 7531 -430 2267 100 0 28 chr11 141435960 141436281 -7347191 + AluSx SINE Alu 1 312 0 2175 104 0 7 chr11 141436311 141436661 -7346811 - AluSq SINE Alu 0 348 1 1152 48 0 14 chr11 141436831 141436976 -7346496 - L1P3 LINE L1 -501 5671 5529 26 0 0 0 chr11 141436977 141437003 -7346469 + AT_rich Low_complexity Low_complexity 1 26 0 463 352 61 5 chr11 141437168 141437381 -7346091 + MIR SINE MIR 36 260 -2 1999 97 0 4 chr11 141437487 141437746 -7345726 + AluSx SINE Alu 1 258 -54 1212 133 4 104 chr11 141437875 141438116 -7345356 - AluJb SINE Alu -9 303 87 596 263 26 0 chr11 141438631 141438787 -7344685 + MIR SINE MIR 78 237 -25 433 364 14 0 chr11 141438793 141438936 -7344536 + MIR SINE MIR 21 165 -97 4950 174 48 42 chr11 141438937 141439011 -7344461 + L1MA10 LINE L1 5166 5238 -1096 1915 183 38 41 chr11 141439011 141439307 -7344165 + MLT1A1 LTR MaLR 1 297 -68 2166 136 0 0 chr11 141439307 141439609 -7343863 - AluSq SINE Alu -11 302 1 1915 183 38 41 chr11 141439609 141439678 -7343794 + MLT1A1 LTR MaLR 297 365 0 4950 174 48 42 chr11 141439678 141439908 -7343564 + L1MA10 LINE L1 5238 5465 -869 1868 118 0 37 chr11 141439908 141440200 -7343272 + AluSx SINE Alu 25 312 0 4950 174 48 42 chr11 141440200 141441052 -7342420 + L1MA10 LINE L1 5465 6327 -7 2809 221 67 46 chr11 141441075 141441286 -7342186 + L1ME1 LINE L1 5350 5555 -779 1003 179 264 48 chr11 141441286 141441638 -7341834 + MSTC LTR MaLR 1 428 0 2809 221 67 46 chr11 141441638 141441995 -7341477 + L1ME1 LINE L1 5555 5903 -431 1786 131 35 25 chr11 141441995 141442277 -7341195 + AluJo SINE Alu 1 285 -27 2809 221 67 46 chr11 141442277 141442349 -7341123 + L1ME1 LINE L1 5903 5972 -362 2049 107 13 23 chr11 141442349 141442682 -7340790 - AluSx SINE Alu 0 312 1 2809 221 67 46 chr11 141442682 141442851 -7340621 + L1ME1 LINE L1 5972 6334 0 194 316 133 0 chr11 141442851 141442949 -7340523 + MIR SINE MIR 152 262 0 2368 115 0 0 chr11 141443228 141443540 -7339932 + AluSq SINE Alu 1 312 -1 252 143 0 0 chr11 141443591 141443633 -7339839 + (GAAAA)n Simple_repeat Simple_repeat 4 45 0 956 237 0 0 chr11 141444018 141444195 -7339277 - MER5B DNA MER1_type 0 178 2 207 0 0 0 chr11 141444322 141444345 -7339127 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1275 195 46 122 chr11 141444726 141445121 -7338351 + MLT1A1 LTR MaLR 1 365 0 225 214 36 0 chr11 141445226 141445282 -7338190 + GA-rich Low_complexity Low_complexity 4 61 0 252 313 80 40 chr11 141445329 141445530 -7337942 - L2 LINE L2 -235 3037 2829 593 256 15 15 chr11 141445596 141445729 -7337743 - MER94 DNA DNA -1 133 1 1642 241 50 61 chr11 141445950 141446490 -7336982 + MLT1F LTR MaLR 1 534 -8 445 289 19 13 chr11 141446559 141446715 -7336757 + MIR3 SINE MIR 52 208 0 491 295 68 21 chr11 141446770 141446960 -7336512 + L3 LINE CR1 613 811 -766 218 289 0 0 chr11 141447115 141447160 -7336312 - L2 LINE L2 -42 3230 3186 259 338 21 7 chr11 141447379 141447524 -7335948 - L2 LINE L2 -1132 2182 2036 1072 316 67 18 chr11 141447527 141448040 -7335432 + L2 LINE L2 2772 3312 -1 2191 100 4 0 chr11 141448048 141448358 -7335114 + AluSx SINE Alu 1 311 0 466 306 98 46 chr11 141448508 141448969 -7334503 - L2 LINE L2 -1833 1481 997 224 200 0 0 chr11 141449600 141449645 -7333827 + L3b LINE CR1 1528 1572 -11 3073 136 11 88 chr11 141449707 141449747 -7333725 - L1MC3 LINE L1 -15 7770 7729 1923 134 0 38 chr11 141449747 141450039 -7333433 + AluSx SINE Alu 1 281 -31 3073 136 11 88 chr11 141450039 141450405 -7333067 - L1MC3 LINE L1 -56 7729 7336 2287 101 0 0 chr11 141450405 141450701 -7332771 - AluY SINE Alu -15 296 1 3073 136 11 88 chr11 141450701 141450868 -7332604 - L1MC3 LINE L1 -449 7336 7247 1494 160 20 105 chr11 141450868 141451086 -7332386 - MLT1A1 LTR MaLR 0 365 194 1912 131 0 34 chr11 141451086 141451413 -7332059 - AluJb SINE Alu 0 317 1 1494 160 20 105 chr11 141451413 141451592 -7331880 - MLT1A1 LTR MaLR -171 194 1 3073 136 11 88 chr11 141451592 141451654 -7331818 - L1MC3 LINE L1 -538 7247 7182 1594 140 50 37 chr11 141451665 141451965 -7331507 - AluSp SINE Alu -9 304 1 2243 84 3 7 chr11 141451966 141452264 -7331208 - AluSx SINE Alu -7 305 9 2321 122 0 0 chr11 141452406 141452718 -7330754 - AluSx SINE Alu 0 312 1 1492 178 63 7 chr11 141452972 141453281 -7330191 + AluJb SINE Alu 1 324 0 241 218 35 69 chr11 141453342 141453429 -7330043 - MIR3 SINE MIR -4 204 121 486 163 44 163 chr11 141453572 141453732 -7329740 + MER103 DNA DNA 2 142 -24 544 286 7 7 chr11 141454157 141454311 -7329161 + MIR SINE MIR 4 157 -105 207 276 0 0 chr11 141454699 141454757 -7328715 - MIR SINE MIR -14 248 191 382 321 27 11 chr11 141455869 141456053 -7327419 - MIR SINE MIR -1 261 75 325 273 9 9 chr11 141456148 141456258 -7327214 - MIR SINE MIR -86 176 67 201 147 0 0 chr11 141456419 141456453 -7327019 + (A)n Simple_repeat Simple_repeat 1 34 0 779 238 30 13 chr11 141456608 141456843 -7326629 - MIR SINE MIR 0 262 24 375 240 5 125 chr11 141457485 141457642 -7325830 + MIR3 SINE MIR 3 133 -75 1933 114 29 63 chr11 141457642 141457822 -7325650 - AluSx SINE Alu -7 305 139 2249 113 0 0 chr11 141457822 141458123 -7325349 - AluY SINE Alu -10 301 1 1933 114 29 63 chr11 141458123 141458258 -7325214 - AluSx SINE Alu -173 139 1 375 240 5 125 chr11 141458258 141458300 -7325172 + MIR3 SINE MIR 133 178 -30 280 336 62 0 chr11 141459534 141459647 -7323825 - MIR SINE MIR -140 122 3 182 389 28 9 chr11 141459894 141460002 -7323470 + L3 LINE CR1 35 144 -1433 366 361 105 21 chr11 141460216 141460261 -7323211 - L2 LINE L2 -1 3312 3272 2167 169 70 7 chr11 141460261 141460664 -7322808 - MSTC LTR MaLR 0 428 1 366 361 105 21 chr11 141460664 141461177 -7322295 - L2 LINE L2 -41 3272 2699 609 176 0 63 chr11 141461196 141461338 -7322134 - FRAM SINE Alu -4 172 40 508 113 113 0 chr11 141461349 141461455 -7322017 - L1MA4 LINE L1 -3 6297 6180 277 250 299 14 chr11 141461460 141461604 -7321868 - L2 LINE L2 -604 2710 2526 830 193 34 28 chr11 141461638 141461814 -7321658 - AluJ SINE Alu -20 292 116 1950 129 33 0 chr11 141461815 141462087 -7321385 - AluSx SINE Alu -29 283 3 193 276 17 17 chr11 141462143 141462201 -7321271 + L3 LINE CR1 583 640 -937 2063 151 20 14 chr11 141462290 141462634 -7320838 - MLT1A1 LTR MaLR -18 347 2 196 250 0 17 chr11 141464112 141464172 -7319300 - L2 LINE L2 -214 3058 3000 2295 88 0 3 chr11 141464249 141464534 -7318938 + AluSq SINE Alu 1 284 -29 811 196 0 0 chr11 141465030 141465163 -7318309 - AluJ SINE Alu -169 133 1 1932 168 89 30 chr11 141465168 141465372 -7318100 - MSTC LTR MaLR 0 428 238 2241 104 152 11 chr11 141465372 141465747 -7317725 - MSTA LTR MaLR 0 428 1 1932 168 89 30 chr11 141465747 141465946 -7317526 - MSTC LTR MaLR -190 238 1 1613 203 3 7 chr11 141465985 141466285 -7317187 + AluJo SINE Alu 1 299 -13 1791 175 25 0 chr11 141466325 141466610 -7316862 - AluJb SINE Alu -19 293 2 760 306 113 34 chr11 141467100 141467746 -7315726 + L1MEd LINE L1 554 1250 -4869 332 201 15 90 chr11 141468524 141468658 -7314814 - L1ME1 LINE L1 -167 5999 5876 5370 133 17 0 chr11 141468694 141469512 -7313960 - L1PA16 LINE L1 0 6166 5335 1766 207 78 40 chr11 141469502 141469987 -7313485 - L1ME1 LINE L1 -269 5897 5387 * 1597 201 7 0 chr11 141469987 141470280 -7313192 - AluJb SINE Alu -17 295 1 1766 207 78 40 chr11 141470280 141470344 -7313128 - L1ME1 LINE L1 -779 5387 5327 996 225 30 124 chr11 141470346 141470772 -7312700 + MLT1B LTR MaLR 1 386 -4 1470 201 44 23 chr11 141470790 141471030 -7312442 - L1ME1 LINE L1 -874 5272 5038 1682 179 25 4 chr11 141471030 141471310 -7312162 - AluJb SINE Alu -26 286 1 1470 201 44 23 chr11 141471310 141472024 -7311448 - L1ME1 LINE L1 -1108 5038 4149 553 253 93 111 chr11 141472260 141472604 -7310868 - MLT1H LTR MaLR -13 536 199 259 239 15 15 chr11 141472656 141472723 -7310749 - MLT1H LTR MaLR -461 88 22 861 266 31 19 chr11 141473028 141473284 -7310188 - MLT1K LTR MaLR 0 588 330 378 225 22 11 chr11 141473273 141473362 -7310110 + Zaphod DNA AcHobo 186 275 -3756 * 2511 152 11 25 chr11 141473368 141473801 -7309671 + LTR3 LTR ERVK 3 429 -3 1567 212 60 89 chr11 141473813 141473993 -7309479 + Zaphod DNA AcHobo 280 464 -3567 1888 151 3 14 chr11 141473993 141474285 -7309187 + AluJb SINE Alu 2 290 -22 1567 212 60 89 chr11 141474285 141474836 -7308636 + Zaphod DNA AcHobo 464 990 -3041 921 185 97 5 chr11 141474853 141475048 -7308424 + MER58A DNA MER1_type 10 222 -2 4978 135 26 31 chr11 141475048 141475215 -7308257 + L1PA16 LINE L1 5314 5480 -686 2209 103 7 17 chr11 141475215 141475516 -7307956 + AluSx SINE Alu 1 298 -14 4978 135 26 31 chr11 141475516 141476153 -7307319 + L1PA16 LINE L1 5480 6115 -51 2414 92 7 0 chr11 141476153 141476457 -7307015 + AluSx SINE Alu 1 306 -6 4978 135 26 31 chr11 141476457 141476509 -7306963 + L1PA16 LINE L1 6115 6166 0 1387 216 82 10 chr11 141476542 141476930 -7306542 + Zaphod DNA AcHobo 3598 4013 -18 308 300 100 0 chr11 141477171 141477261 -7306211 + L3 LINE CR1 1435 1533 -44 270 192 19 0 chr11 141477265 141477317 -7306155 - L2 LINE L2 -6 3266 3214 195 365 26 26 chr11 141478172 141478287 -7305185 - MIR3 SINE MIR -87 121 7 382 303 92 0 chr11 141478415 141478567 -7304905 + MIR SINE MIR 47 212 -50 444 341 28 23 chr11 141479086 141479300 -7304172 - MIR SINE MIR -46 216 2 216 355 123 22 chr11 141479313 141479541 -7303931 - L2 LINE L2 -457 2857 2607 330 295 82 8 chr11 141479684 141479806 -7303666 - MLT1L LTR MaLR -62 553 423 680 243 174 9 chr11 141480172 141480390 -7303082 + Charlie2 DNA MER1_type 64 317 -2465 596 186 71 7 chr11 141480400 141480540 -7302932 + Charlie2 DNA MER1_type 1856 2004 -858 1630 162 61 7 chr11 141480544 141480822 -7302650 + AluJo SINE Alu 5 297 -15 1079 200 147 35 chr11 141480854 141481242 -7302230 + Charlie2 DNA MER1_type 2127 2569 -293 2336 96 3 3 chr11 141481242 141481543 -7301929 - AluSp SINE Alu -12 301 1 1079 200 147 35 chr11 141481543 141481584 -7301888 + Charlie2 DNA MER1_type 2569 2604 -258 661 246 62 36 chr11 141481585 141481780 -7301692 + L1MA9 LINE L1 6061 6260 -52 254 241 137 20 chr11 141481780 141481976 -7301496 + Charlie2 DNA MER1_type 2573 2805 -57 2378 85 0 0 chr11 141481976 141482270 -7301202 + AluY SINE Alu 1 294 -17 254 241 137 20 chr11 141482270 141482322 -7301150 + Charlie2 DNA MER1_type 2805 2850 -12 385 311 168 31 chr11 141482364 141482840 -7300632 - L2 LINE L2 -927 2387 1847 2386 75 0 3 chr11 141485512 141485836 -7297636 - AluY SINE Alu 0 311 2 450 216 0 0 chr11 141486080 141486168 -7297304 + L2 LINE L2 3225 3312 -1 2107 120 17 0 chr11 141486257 141486557 -7296915 + AluSx SINE Alu 3 307 -5 584 318 55 39 chr11 141486968 141487427 -7296045 + L2 LINE L2 2494 2959 -355 2133 137 0 6 chr11 141487483 141487796 -7295676 - AluSx SINE Alu -1 311 1 889 214 168 66 chr11 141487808 141488172 -7295300 + MER57A LTR ERV1 3 403 0 402 242 40 40 chr11 141488349 141488473 -7294999 + L2 LINE L2 3185 3308 -5 961 104 0 0 chr11 141488749 141488874 -7294598 + AluSc SINE Alu 2 126 -183 195 231 0 0 chr11 141489131 141489170 -7294302 + MER5A DNA MER1_type 151 189 0 990 83 8 8 chr11 141489243 141489376 -7294096 - U8 snRNA snRNA 0 136 4 1658 175 8 0 chr11 141490406 141490669 -7292803 - AluSx SINE Alu -26 286 22 7273 169 177 21 chr11 141490669 141492180 -7291292 - MER52A LTR ERV1 -9 1746 1 255 118 0 0 chr11 141492180 141492214 -7291258 - AluSx SINE Alu -267 34 1 1347 179 76 8 chr11 141493031 141493132 -7290340 + AluJo SINE Alu 10 103 -209 210 91 0 0 chr11 141493132 141493165 -7290307 + (CA)n Simple_repeat Simple_repeat 2 34 0 1347 179 76 8 chr11 141493165 141493325 -7290147 + AluJo SINE Alu 103 289 -23 2207 118 0 3 chr11 141494823 141495120 -7288352 + AluSq SINE Alu 1 296 -17 2277 108 0 0 chr11 141495716 141496011 -7287461 - AluSx SINE Alu -16 296 2 613 187 67 0 chr11 141496021 141496155 -7287317 - L1MC5 LINE L1 -60 7901 7759 25 65 0 0 chr11 141496163 141496209 -7287263 + AT_rich Low_complexity Low_complexity 1 46 0 2335 88 0 3 chr11 141496287 141496582 -7286890 + AluSx SINE Alu 2 295 -17 4093 120 56 6 chr11 141496626 141497284 -7286188 + Tigger3b DNA MER2_type 2 692 -539 1223 70 0 19 chr11 141497286 141497442 -7286030 - AluSp/q SINE Alu -3 310 158 1795 184 0 0 chr11 141497486 141497768 -7285704 + AluJb SINE Alu 13 294 -18 2787 136 13 76 chr11 141497768 141498305 -7285167 + Tigger3b DNA MER2_type 729 1231 -1 270 160 200 0 chr11 141498315 141498390 -7285082 - L1MC4 LINE L1 -1339 6703 6614 614 232 60 63 chr11 141498391 141498482 -7284990 - L1MC5 LINE L1 -355 7606 7516 2042 162 3 0 chr11 141498482 141498791 -7284681 - AluSx SINE Alu -2 310 1 614 232 60 63 chr11 141498791 141499018 -7284454 - L1MC5 LINE L1 -445 7516 7289 1336 228 196 16 chr11 141499194 141499637 -7283835 + MLT2F LTR ERVL 1 523 -140 1395 215 86 101 chr11 141499654 141500395 -7283077 - L1MC5 LINE L1 -770 7191 6455 237 211 0 0 chr11 141500399 141500451 -7283021 + (TA)n Simple_repeat Simple_repeat 1 52 0 1711 111 32 79 chr11 141500577 141500785 -7282687 + MSTB1 LTR MaLR 1 190 -242 2080 122 0 6 chr11 141500785 141501097 -7282375 + AluSx SINE Alu 2 311 -1 1711 111 32 79 chr11 141501097 141501203 -7282269 + MSTB1 LTR MaLR 190 300 -132 322 122 0 0 chr11 141501202 141501251 -7282221 + MSTB1 LTR MaLR 251 299 -133 * 971 152 28 17 chr11 141501251 141501429 -7282043 + MSTB1 LTR MaLR 251 430 -2 403 271 61 99 chr11 141501431 141501578 -7281894 - L1MC4a LINE L1 -1370 6438 6287 3614 167 9 68 chr11 141501578 141501982 -7281490 + L1MB1 LINE L1 5435 5772 -396 1635 103 159 0 chr11 141501982 141502234 -7281238 + AluSg SINE Alu 1 292 -8 3614 167 9 68 chr11 141502234 141502608 -7280864 + L1MB1 LINE L1 5772 6167 -1 403 271 61 99 chr11 141502608 141502803 -7280669 - L1MC4a LINE L1 -1521 6287 6109 557 146 34 0 chr11 141502810 141502899 -7280573 + MLT1F1 LTR MaLR 7 98 -469 712 154 0 24 chr11 141502900 141503023 -7280449 - FLAM_C SINE Alu 0 143 24 1981 212 76 20 chr11 141503035 141503484 -7279988 + MLT1F1 LTR MaLR 94 567 0 932 282 76 13 chr11 141503518 141503898 -7279574 - L1MC4a LINE L1 -1769 6039 5636 1642 154 49 0 chr11 141504722 141505007 -7278465 - AluJo SINE Alu -13 299 1 2695 3 0 0 chr11 141505545 141505843 -7277629 - AluYa5 SINE Alu -13 298 1 408 164 151 46 chr11 141506311 141506463 -7277009 - MER34 LTR ERV1 -5 537 370 498 165 0 0 chr11 141506464 141506543 -7276929 + FLAM_A SINE Alu 1 79 -53 208 237 0 0 chr11 141506549 141506587 -7276885 + polypurine Low_complexity Low_complexity 4 41 0 836 133 22 22 chr11 141506587 141506767 -7276705 + GA-rich Low_complexity Low_complexity 1 180 0 629 240 97 101 chr11 141506785 141507189 -7276283 - MER34 LTR ERV1 -162 403 1 287 279 0 0 chr11 141507284 141507345 -7276127 - MIR SINE MIR -63 145 85 1943 129 0 0 chr11 141507351 141507630 -7275842 + AluSg SINE Alu 1 279 -31 5585 60 16 0 chr11 141508966 141509671 -7273801 - L1PA8 LINE L1 0 6172 5457 236 264 46 69 chr11 141509870 141509957 -7273515 + L2 LINE L2 3186 3270 -2 1987 84 0 57 chr11 141510010 141510053 -7273419 + AluY SINE Alu 1 45 -334 3016 208 24 62 chr11 141510053 141511061 -7272411 - LTR5 LTR ERVK 0 969 1 1987 84 0 57 chr11 141511061 141511413 -7272059 + AluY SINE Alu 45 379 0 702 215 0 15 chr11 141512013 141512148 -7271324 + FLAM_C SINE Alu 1 133 0 24 0 0 0 chr11 141512148 141512172 -7271300 + AT_rich Low_complexity Low_complexity 1 24 0 1891 144 3 47 chr11 141512447 141512628 -7270844 + L1MB2 LINE L1 5828 5987 -184 2335 167 43 12 chr11 141512628 141513047 -7270425 + MSTB1 LTR MaLR 1 432 0 1891 144 3 47 chr11 141513047 141513225 -7270247 + L1MB2 LINE L1 5987 6171 0 716 260 0 72 chr11 141513633 141513868 -7269604 - MIR SINE MIR -10 252 35 1497 270 114 34 chr11 141513896 141514328 -7269144 + MER115 DNA AcHobo 1 502 -191 1897 146 7 0 chr11 141514328 141514623 -7268849 - AluSx SINE Alu -15 297 1 1497 270 114 34 chr11 141514623 141514831 -7268641 + MER115 DNA AcHobo 502 692 -1 211 300 100 0 chr11 141514892 141514962 -7268510 - MIR SINE MIR -27 235 159 1429 144 4 12 chr11 141515107 141515350 -7268122 + AluJb SINE Alu 66 306 -6 804 163 0 15 chr11 141515933 141516068 -7267404 + FLAM_C SINE Alu 1 133 0 1514 187 19 13 chr11 141516075 141516385 -7267087 + AluJo SINE Alu 1 312 0 1504 186 20 3 chr11 141517039 141517335 -7266137 + AluJo SINE Alu 1 301 -11 575 283 96 21 chr11 141517554 141517892 -7265580 - LTR16A LTR ERVL -2 455 89 461 239 14 58 chr11 141517978 141518116 -7265356 + L2 LINE L2 3182 3313 0 1230 235 43 118 chr11 141518195 141518428 -7265044 - L1MC4 LINE L1 -196 7846 7597 1797 116 4 0 chr11 141518428 141518686 -7264786 - AluSg SINE Alu -3 307 49 1230 235 43 118 chr11 141518686 141518741 -7264731 - L1MC4 LINE L1 -445 7597 7539 1711 183 0 3 chr11 141518741 141519052 -7264420 + AluJb SINE Alu 1 310 -2 1230 235 43 118 chr11 141519052 141519074 -7264398 - L1MC4 LINE L1 -503 7539 7517 1832 155 7 0 chr11 141519074 141519377 -7264095 - AluSx SINE Alu -7 305 1 1230 235 43 118 chr11 141519377 141519478 -7263994 - L1MC4 LINE L1 -525 7517 7410 1596 168 10 17 chr11 141519478 141519769 -7263703 - AluJo SINE Alu -18 294 6 1230 235 43 118 chr11 141519769 141519958 -7263514 - L1MC4 LINE L1 -632 7410 7288 986 94 14 0 chr11 141519960 141520098 -7263374 - AluSx SINE Alu -159 153 14 2382 55 0 19 chr11 141520203 141520512 -7262960 + AluY SINE Alu 1 303 -8 2023 128 3 0 chr11 141520639 141520936 -7262536 - AluSx SINE Alu -5 307 10 2245 110 0 0 chr11 141521061 141521370 -7262102 - AluSg SINE Alu -1 309 1 622 328 75 65 chr11 141521371 141522125 -7261347 + L2 LINE L2 2465 3231 -41 1794 172 3 0 chr11 141522125 141522422 -7261050 - AluJo SINE Alu -14 298 1 622 328 75 65 chr11 141522422 141522464 -7261008 + L2 LINE L2 3231 3271 -1 2127 125 3 0 chr11 141523792 141524103 -7259369 + AluSx SINE Alu 1 312 0 343 299 90 0 chr11 141524168 141524302 -7259170 + MIR SINE MIR 66 211 -51 2034 86 7 7 chr11 141528228 141528508 -7254964 + AluSq SINE Alu 1 280 -33 873 29 0 0 chr11 141528508 141528612 -7254860 + (GGAA)n Simple_repeat Simple_repeat 1 104 0 21 0 0 0 chr11 141530767 141530788 -7252684 + AT_rich Low_complexity Low_complexity 1 21 0 1994 150 0 0 chr11 141530841 141531147 -7252325 - AluJo SINE Alu -6 306 1 464 250 101 89 chr11 141531214 141531317 -7252155 - MIR SINE MIR -1 261 161 2171 104 3 0 chr11 141531317 141531615 -7251857 + AluSx SINE Alu 1 299 -13 464 250 101 89 chr11 141531615 141531759 -7251713 - MIR SINE MIR -101 161 11 340 287 37 21 chr11 141531928 141532116 -7251356 - L1ME LINE L1 -303 5818 5628 473 314 77 74 chr11 141533245 141533675 -7249797 + L2 LINE L2 2804 3234 -38 347 234 108 18 chr11 141534108 141534215 -7249257 - MLT1L LTR MaLR -460 155 39 1062 243 154 22 chr11 141534215 141534773 -7248699 + LTR50 LTR ERVL 1 737 -58 2053 91 3 7 chr11 141534773 141535058 -7248414 - AluSq SINE Alu -8 305 22 1062 243 154 22 chr11 141535058 141535126 -7248346 + LTR50 LTR ERVL 737 795 0 1929 176 45 15 chr11 141535276 141535721 -7247751 + MER89 LTR ERV1 2 559 0 604 245 39 26 chr11 141535727 141535882 -7247590 - MIR SINE MIR -74 188 32 210 335 100 35 chr11 141535882 141536082 -7247390 + L2 LINE L2 3048 3260 -12 252 0 0 0 chr11 141536082 141536110 -7247362 + (T)n Simple_repeat Simple_repeat 1 28 0 27 0 0 0 chr11 141536130 141536157 -7247315 + GC_rich Low_complexity Low_complexity 1 27 0 315 280 8 53 chr11 141536275 141536407 -7247065 + Alu SINE Alu 176 301 0 24 32 0 0 chr11 141536456 141536487 -7246985 + AT_rich Low_complexity Low_complexity 1 31 0 38 0 0 0 chr11 141536801 141536839 -7246633 + AT_rich Low_complexity Low_complexity 1 38 0 1059 272 54 48 chr11 141536865 141537255 -7246217 - HAL1 LINE L1 -29 2478 2092 183 42 0 0 chr11 141537255 141537279 -7246193 + (CATTT)n Simple_repeat Simple_repeat 2 25 0 2096 120 0 0 chr11 141537279 141537571 -7245901 - AluSx SINE Alu -20 292 1 1059 272 54 48 chr11 141537571 141537701 -7245771 - HAL1 LINE L1 -414 2093 1954 335 303 24 24 chr11 141537800 141537965 -7245507 - L1ME LINE L1 -336 5785 5621 225 0 0 0 chr11 141538912 141538937 -7244535 + (T)n Simple_repeat Simple_repeat 1 25 0 198 0 0 0 chr11 141539083 141539105 -7244367 + (A)n Simple_repeat Simple_repeat 1 22 0 793 283 79 17 chr11 141540025 141540265 -7243207 - MIR SINE MIR -7 255 1 302 115 19 0 chr11 141540305 141540357 -7243115 + CT-rich Low_complexity Low_complexity 1 53 0 1377 61 0 0 chr11 141540357 141540537 -7242935 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1325 137 14 5 chr11 141540539 141540750 -7242722 - AluY SINE Alu -18 293 81 1650 169 26 13 chr11 141540777 141541079 -7242393 - AluJb SINE Alu -6 306 1 184 278 0 0 chr11 141541079 141541133 -7242339 + MIR SINE MIR 64 117 -145 3196 177 52 10 chr11 141541830 141542447 -7241025 - L1MB7 LINE L1 -57 6127 5485 381 234 172 39 chr11 141542623 141542751 -7240721 + MIR SINE MIR 118 262 0 670 293 133 18 chr11 141542839 141543238 -7240234 - L2 LINE L2 -26 3287 2843 488 281 98 45 chr11 141543838 141544084 -7239388 + MIR SINE MIR 3 261 -1 227 100 0 25 chr11 141544088 141544118 -7239354 + (CTA)n Simple_repeat Simple_repeat 3 33 -8 1856 164 0 0 chr11 141544118 141544417 -7239055 - AluSx SINE Alu -13 299 1 227 100 0 25 chr11 141544417 141544426 -7239046 + (CTA)n Simple_repeat Simple_repeat 33 41 0 466 252 49 8 chr11 141544665 141544788 -7238684 - MIR SINE MIR -25 237 110 406 354 62 0 chr11 141545767 141545928 -7237544 - L2 LINE L2 -1 3271 3101 187 305 186 8 chr11 141546056 141546174 -7237298 - L2 LINE L2 -244 3028 2890 2086 125 3 3 chr11 141546187 141546499 -7236973 - AluJo SINE Alu 0 312 1 227 245 32 64 chr11 141546631 141546676 -7236796 - L2 LINE L2 -557 2757 2712 1989 126 14 0 chr11 141546676 141546970 -7236502 - AluSx SINE Alu -14 298 1 227 245 32 64 chr11 141546970 141547018 -7236454 - L2 LINE L2 -602 2712 2667 888 111 8 0 chr11 141547410 141547536 -7235936 + FLAM_C SINE Alu 1 127 -16 26 0 0 0 chr11 141547536 141547562 -7235910 + AT_rich Low_complexity Low_complexity 1 26 0 427 357 129 30 chr11 141547584 141548206 -7235266 - L2 LINE L2 -2290 1024 342 238 344 43 87 chr11 141548551 141548874 -7234598 + L2 LINE L2 2449 2757 -557 2088 108 0 13 chr11 141549329 141549634 -7233838 - AluSq SINE Alu -12 301 1 234 218 115 13 chr11 141549662 141549740 -7233732 + L2 LINE L2 3226 3311 -2 265 40 60 0 chr11 141550539 141550589 -7232883 + (TTTG)n Simple_repeat Simple_repeat 2 180 0 1264 158 54 23 chr11 141550589 141550848 -7232624 - AluJo SINE Alu -27 285 19 234 0 0 0 chr11 141551036 141551062 -7232410 + (T)n Simple_repeat Simple_repeat 1 26 0 285 98 0 0 chr11 141551269 141551310 -7232162 + (T)n Simple_repeat Simple_repeat 1 41 0 416 324 92 0 chr11 141552030 141552215 -7231257 + MIR SINE MIR 49 250 -12 763 128 0 0 chr11 141552419 141552536 -7230936 + AluSg/x SINE Alu 192 308 -2 496 340 20 20 chr11 141552932 141553185 -7230287 + MIR SINE MIR 1 253 -9 749 134 0 0 chr11 141554284 141554403 -7229069 + AluSg/x SINE Alu 192 310 0 330 26 0 0 chr11 141555179 141555218 -7228254 + (CA)n Simple_repeat Simple_repeat 1 39 0 608 209 144 7 chr11 141556155 141556294 -7227178 - MER3 DNA MER1_type -47 162 5 192 171 14 43 chr11 141557016 141557086 -7226386 + CT-rich Low_complexity Low_complexity 3 70 0 433 223 16 16 chr11 141557431 141557552 -7225920 - MIR3 SINE MIR -22 186 66 2048 143 3 0 chr11 141558588 141558888 -7224584 + AluSx SINE Alu 1 301 -11 255 125 0 0 chr11 141559095 141559135 -7224337 + (TTTC)n Simple_repeat Simple_repeat 2 41 0 309 109 0 0 chr11 141559265 141559311 -7224161 + (A)n Simple_repeat Simple_repeat 1 46 0 1895 169 0 19 chr11 141559597 141559904 -7223568 + AluJo SINE Alu 1 301 -11 228 294 0 15 chr11 141560104 141560172 -7223300 - MIR SINE MIR -35 227 161 1869 147 0 38 chr11 141560174 141560493 -7222979 + AluJb SINE Alu 1 307 -5 2124 131 0 3 chr11 141560617 141560914 -7222558 + AluSx SINE Alu 1 296 -16 378 42 0 0 chr11 141561159 141561207 -7222265 + (A)n Simple_repeat Simple_repeat 1 48 0 2243 121 0 3 chr11 141561361 141561668 -7221804 - AluSx SINE Alu -6 306 1 1029 82 15 0 chr11 141561668 141561802 -7221670 - AluSq/x SINE Alu -176 137 2 961 176 0 18 chr11 141562330 141562500 -7220972 + AluJb SINE Alu 142 308 -4 1632 191 0 26 chr11 141562505 141562647 -7220825 + AluSx SINE Alu 3 147 -165 2515 78 3 0 chr11 141562647 141562955 -7220517 + AluSp SINE Alu 1 309 -4 1632 191 0 26 chr11 141562955 141563121 -7220351 + AluSx SINE Alu 147 303 -9 2005 126 3 10 chr11 141563137 141563431 -7220041 + AluSc SINE Alu 6 297 -12 207 0 0 0 chr11 141563581 141563604 -7219868 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 571 246 92 64 chr11 141563983 141564282 -7219190 - MLT1H LTR MaLR -222 327 1 610 277 128 17 chr11 141564320 141564555 -7218917 + MLT1H LTR MaLR 73 333 -216 435 187 121 0 chr11 141564614 141564705 -7218767 + MLT1H LTR MaLR 448 549 -6 1093 166 13 31 chr11 141564927 141565149 -7218323 - L1M3 LINE L1 -584 5587 5363 2205 103 0 3 chr11 141565149 141565440 -7218032 - AluSx SINE Alu -22 290 1 1093 166 13 31 chr11 141565440 141565493 -7217979 - L1M3 LINE L1 -808 5363 5311 1029 119 0 19 chr11 141565487 141565647 -7217825 + L1M2 LINE L1 5517 5673 -618 * 2327 95 17 0 chr11 141566054 141566349 -7217123 + AluSx SINE Alu 1 300 -12 337 331 6 11 chr11 141566351 141566532 -7216940 + AluSq SINE Alu 2 181 -122 1690 141 6 62 chr11 141566637 141566849 -7216623 - AluSx SINE Alu -6 306 116 2352 75 0 13 chr11 141566849 141567155 -7216317 + AluY SINE Alu 2 303 -8 1690 141 6 62 chr11 141567155 141567262 -7216210 - AluSx SINE Alu -196 116 5 2088 111 24 0 chr11 141567300 141567589 -7215883 - AluSp SINE Alu -17 296 1 2190 108 7 3 chr11 141567795 141568090 -7215382 + AluSq SINE Alu 7 302 -11 517 276 60 0 chr11 141568194 141568393 -7215079 + L1ME3A LINE L1 5769 5979 -191 2095 122 3 3 chr11 141568418 141568712 -7214760 - AluSq SINE Alu -19 294 1 244 167 42 0 chr11 141568970 141569018 -7214454 + L2 LINE L2 3211 3260 -12 240 255 94 28 chr11 141569658 141569764 -7213708 + MIR SINE MIR 29 141 -121 2092 109 0 7 chr11 141569810 141570104 -7213368 + AluY SINE Alu 19 310 -1 2042 154 0 0 chr11 141570472 141570777 -7212695 + AluSx SINE Alu 1 305 -7 410 156 73 21 chr11 141571459 141571555 -7211917 - MER5A DNA MER1_type -80 109 9 200 359 41 36 chr11 141571616 141571811 -7211661 + L2 LINE L2 2569 2764 -550 1478 206 0 28 chr11 141572141 141572462 -7211010 - AluJb SINE Alu 0 312 1 778 177 0 21 chr11 141572925 141573066 -7210406 + AluJb SINE Alu 157 294 -18 24 0 0 29 chr11 141573074 141573086 -7210386 + AT_rich Low_complexity Low_complexity 1 12 -22 2082 101 10 17 chr11 141573086 141573383 -7210089 - AluSg SINE Alu -15 295 1 24 0 0 29 chr11 141573383 141573405 -7210067 + AT_rich Low_complexity Low_complexity 12 34 0 2207 104 0 7 chr11 141573425 141573743 -7209729 - AluSp SINE Alu 0 316 1 2178 121 0 3 chr11 141574120 141574425 -7209047 - AluSq SINE Alu -9 304 1 1498 193 143 14 chr11 141574445 141574916 -7208556 + MLT1F LTR MaLR 1 534 -8 1109 211 43 37 chr11 141574918 141575217 -7208255 - L1ME3A LINE L1 -15 6155 5855 1180 230 7 31 chr11 141575363 141575654 -7207818 + AluJo SINE Alu 1 284 -18 286 0 0 181 chr11 141575787 141575859 -7207613 + (A)n Simple_repeat Simple_repeat 1 59 0 29 0 0 0 chr11 141575892 141575921 -7207551 + AT_rich Low_complexity Low_complexity 1 29 0 2246 106 13 3 chr11 141575950 141576251 -7207221 - AluSx SINE Alu -8 304 1 1196 198 9 81 chr11 141576462 141576785 -7206687 - AluY SINE Alu 0 301 2 997 187 163 27 chr11 141576815 141576940 -7206532 + AluJo SINE Alu 1 108 -194 321 26 0 0 chr11 141576940 141576978 -7206494 + (TAA)n Simple_repeat Simple_repeat 2 39 0 997 187 163 27 chr11 141576978 141577109 -7206363 + AluJo SINE Alu 108 292 -10 2310 107 3 0 chr11 141577114 141577413 -7206059 + AluSp SINE Alu 1 300 -13 205 100 0 100 chr11 141577434 141577484 -7205988 + (T)n Simple_repeat Simple_repeat 1 45 0 448 303 35 46 chr11 141577505 141577789 -7205683 + AluSp SINE Alu 21 301 -12 27 14 0 83 chr11 141577855 141577927 -7205545 + AT_rich Low_complexity Low_complexity 1 66 0 423 316 26 5 chr11 141578033 141578223 -7205249 + AluSg/x SINE Alu 94 287 -15 917 192 17 0 chr11 141578223 141578395 -7205077 + AluSg/x SINE Alu 119 293 -17 220 292 31 0 chr11 141578502 141578567 -7204905 + GA-rich Low_complexity Low_complexity 2 68 0 258 330 154 5 chr11 141578575 141578763 -7204709 + L3 LINE CR1 1355 1570 -7 1776 123 36 0 chr11 141578945 141579198 -7204274 - AluSq SINE Alu -51 262 1 459 150 12 0 chr11 141579693 141579773 -7203699 - AluJb SINE Alu -185 127 47 2077 128 3 7 chr11 141580124 141580428 -7203044 - AluSx SINE Alu -5 307 5 234 128 0 0 chr11 141580809 141580848 -7202624 + (T)n Simple_repeat Simple_repeat 1 39 0 180 0 0 0 chr11 141580873 141580893 -7202579 + (G)n Simple_repeat Simple_repeat 1 20 0 27 0 0 0 chr11 141580995 141581022 -7202450 + AT_rich Low_complexity Low_complexity 1 27 0 32 26 0 0 chr11 141581096 141581135 -7202337 + GC_rich Low_complexity Low_complexity 1 39 0 35 0 0 0 chr11 141581184 141581219 -7202253 + AT_rich Low_complexity Low_complexity 1 35 0 565 337 182 19 chr11 141581757 141582335 -7201137 + L3 LINE CR1 665 1336 -241 2137 115 0 0 chr11 141582409 141582696 -7200776 + AluSg SINE Alu 9 295 -15 315 296 24 69 chr11 141583279 141583570 -7199902 + AluSq SINE Alu 26 303 0 25 0 0 0 chr11 141583586 141583611 -7199861 + AT_rich Low_complexity Low_complexity 1 25 0 2387 81 19 10 chr11 141583611 141583920 -7199552 - AluSx SINE Alu 0 312 1 817 179 0 14 chr11 141584062 141584207 -7199265 + FLAM_C SINE Alu 1 143 0 180 0 0 0 chr11 141584212 141584232 -7199240 + (T)n Simple_repeat Simple_repeat 1 20 0 26 0 0 0 chr11 141584378 141584404 -7199068 + AT_rich Low_complexity Low_complexity 1 26 0 210 158 0 0 chr11 141584428 141584466 -7199006 + T-rich Low_complexity Low_complexity 1 38 0 975 194 9 14 chr11 141584611 141584822 -7198650 + AluSg/x SINE Alu 100 309 -1 341 224 34 78 chr11 141585114 141585293 -7198179 + L1M4 LINE L1 4489 4659 -1487 2325 116 0 3 chr11 141585343 141585654 -7197818 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr11 141585682 141585703 -7197769 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr11 141586220 141586245 -7197227 + AT_rich Low_complexity Low_complexity 1 25 0 404 274 0 0 chr11 141586417 141586512 -7196960 + AluSg/x SINE Alu 201 295 -5 950 269 4 8 chr11 141587088 141587356 -7196116 - AluSq SINE Alu -18 295 29 1655 171 51 0 chr11 141587691 141587966 -7195506 + AluSx SINE Alu 6 294 -18 778 287 187 14 chr11 141588101 141588780 -7194692 - L2 LINE L2 -5 3308 2505 382 312 13 60 chr11 141588791 141589105 -7194367 - AluSp SINE Alu 0 303 5 70 0 0 0 chr11 141589110 141589180 -7194292 + AT_rich Low_complexity Low_complexity 1 70 0 23 0 0 0 chr11 141589546 141589569 -7193903 + AT_rich Low_complexity Low_complexity 1 23 0 2200 117 3 3 chr11 141589569 141589877 -7193595 - AluSg SINE Alu 0 310 3 3477 212 72 16 chr11 141589878 141590756 -7192716 - L1MC4a LINE L1 -193 7615 6689 686 195 55 30 chr11 141590756 141590779 -7192693 + AluYa5 SINE Alu 98 119 -192 423 0 0 0 chr11 141590779 141590826 -7192646 + (CA)n Simple_repeat Simple_repeat 2 48 0 686 195 55 30 chr11 141590826 141591002 -7192470 + AluYa5 SINE Alu 119 302 -9 2010 159 0 0 chr11 141591182 141591490 -7191982 - AluSp SINE Alu -5 308 1 2256 109 6 3 chr11 141591894 141592205 -7191267 - AluSq SINE Alu -1 312 1 226 136 23 0 chr11 141592343 141592387 -7191085 + MER112 DNA MER1_type 7 51 -209 1833 121 4 0 chr11 141592391 141592640 -7190832 + AluSx SINE Alu 7 256 -56 544 120 60 0 chr11 141592767 141592867 -7190605 + AluYb8 SINE Alu 3 108 -210 25 0 0 0 chr11 141593119 141593144 -7190328 + AT_rich Low_complexity Low_complexity 1 25 0 646 325 10 10 chr11 141593649 141593944 -7189528 - AluJb SINE Alu -3 299 5 234 62 0 0 chr11 141593957 141593989 -7189483 + (A)n Simple_repeat Simple_repeat 1 32 0 222 118 0 0 chr11 141594012 141594046 -7189426 + (A)n Simple_repeat Simple_repeat 1 34 0 597 207 7 15 chr11 141594238 141594373 -7189099 - AluSq/x SINE Alu -178 135 2 26 50 0 0 chr11 141594595 141594635 -7188837 + AT_rich Low_complexity Low_complexity 1 40 0 2352 95 3 13 chr11 141594845 141595160 -7188312 + AluSx SINE Alu 1 312 0 369 0 0 0 chr11 141595542 141595583 -7187889 + (G)n Simple_repeat Simple_repeat 1 41 0 1232 218 10 35 chr11 141595799 141596111 -7187361 - AluSq SINE Alu -7 306 3 2313 91 0 0 chr11 141596246 141596565 -7186907 + AluSc SINE Alu 3 321 0 2286 102 0 3 chr11 141596591 141596885 -7186587 + AluSx SINE Alu 1 293 -19 629 165 16 0 chr11 141596885 141597012 -7186460 + L1MB8 LINE L1 5363 5491 -800 2322 107 0 3 chr11 141597116 141597416 -7186056 - AluSx SINE Alu -13 299 1 2160 75 46 4 chr11 141597684 141597965 -7185507 + AluY SINE Alu 1 293 -18 717 254 4 89 chr11 141597976 141598212 -7185260 + AluJo SINE Alu 2 217 -95 270 316 10 10 chr11 141598218 141598316 -7185156 + AluJo SINE Alu 104 201 -101 23 0 0 0 chr11 141598428 141598451 -7185021 + GC_rich Low_complexity Low_complexity 1 23 0 270 0 0 0 chr11 141598485 141598515 -7184957 + (A)n Simple_repeat Simple_repeat 1 30 0 283 57 0 132 chr11 141598674 141598727 -7184745 - MER4A LTR ERV1 -537 127 82 2140 117 7 0 chr11 141598727 141599032 -7184440 + AluSx SINE Alu 1 307 0 189 0 0 0 chr11 141599075 141599096 -7184376 + (A)n Simple_repeat Simple_repeat 1 21 0 33 43 0 0 chr11 141599311 141599358 -7184114 + AT_rich Low_complexity Low_complexity 1 47 0 26 0 0 0 chr11 141599407 141599433 -7184039 + AT_rich Low_complexity Low_complexity 1 26 0 1109 229 4 14 chr11 141599843 141600118 -7183354 + AluSx SINE Alu 28 299 -13 1381 159 106 22 chr11 141600118 141600439 -7183033 + L1MB8 LINE L1 5819 6166 -12 1398 184 4 4 chr11 141600581 141600820 -7182652 + AluSx SINE Alu 42 280 -32 1713 140 58 10 chr11 141601324 141601617 -7181855 + AluSx SINE Alu 1 307 -5 32 0 0 0 chr11 141601649 141601681 -7181791 + AT_rich Low_complexity Low_complexity 1 32 0 2143 113 0 0 chr11 141602123 141602432 -7181040 + AluSx SINE Alu 1 309 -3 2228 91 0 0 chr11 141602540 141602836 -7180636 + AluSc SINE Alu 1 296 -13 2259 63 0 54 chr11 141603082 141603397 -7180075 + AluY SINE Alu 1 298 -13 1550 123 11 15 chr11 141603465 141603725 -7179747 + AluSp SINE Alu 3 261 -52 487 219 118 8 chr11 141603838 141603957 -7179515 + AluYa5 SINE Alu 163 294 -17 695 200 8 0 chr11 141603966 141604091 -7179381 + FLAM_C SINE Alu 1 126 -7 1615 169 53 3 chr11 141604121 141604405 -7179067 + AluJb SINE Alu 1 298 -14 658 197 0 24 chr11 141604533 141604660 -7178812 - FLAM_C SINE Alu -5 128 5 543 31 0 0 chr11 141604707 141604772 -7178700 + (TG)n Simple_repeat Simple_repeat 1 65 0 1535 116 34 78 chr11 141604775 141605068 -7178404 - AluSg SINE Alu -30 280 1 717 109 18 0 chr11 141605286 141605441 -7178031 + AluSg/x SINE Alu 197 353 0 180 149 43 85 chr11 141606371 141606418 -7177054 + MIR SINE MIR 86 130 -78 2256 97 0 28 chr11 141606456 141606777 -7176695 - AluSx SINE Alu 0 312 1 291 277 0 0 chr11 141606782 141606847 -7176625 - L2 LINE L2 -16 3256 3192 455 239 77 8 chr11 141606879 141607009 -7176463 - MIR SINE MIR -2 260 122 1893 135 0 23 chr11 141607095 141607399 -7176073 - AluSx SINE Alu -15 297 1 1444 174 4 39 chr11 141607944 141608225 -7175247 - AluSx SINE Alu 0 312 42 1357 159 106 22 chr11 141608365 141608686 -7174786 - L1MB8 LINE L1 -12 6166 5819 2171 103 0 10 chr11 141608686 141608988 -7174484 - AluSx SINE Alu -13 299 1 1034 183 151 7 chr11 141608995 141609347 -7174125 - L1MB8 LINE L1 -607 5577 5176 997 183 52 14 chr11 141609349 141609562 -7173910 + AluJb SINE Alu 90 310 -2 226 133 156 0 chr11 141610000 141610045 -7173427 - L2 LINE L2 0 3313 3262 2250 100 3 0 chr11 141610357 141610667 -7172805 + AluSp SINE Alu 1 311 -2 1578 143 58 10 chr11 141611127 141611420 -7172052 + AluSx SINE Alu 1 307 -5 1112 184 96 43 chr11 141611928 141612210 -7171262 + AluSx SINE Alu 1 297 -5 408 274 27 0 chr11 141612632 141612751 -7170721 + FLAM_A SINE Alu 1 96 -37 1619 151 35 11 chr11 141612811 141613096 -7170376 + AluSp SINE Alu 2 293 -20 405 138 12 38 chr11 141614435 141614515 -7168957 - U14 snRNA snRNA -1 86 9 674 69 0 11 chr11 141615267 141615354 -7168118 - U14 snRNA snRNA -1 86 1 412 136 23 45 chr11 141615693 141615781 -7167691 - U14 snRNA snRNA -1 86 1 211 284 108 49 chr11 141619923 141620025 -7163447 - MIR SINE MIR -63 145 38 269 264 128 8 chr11 141620228 141620353 -7163119 - MIR SINE MIR -50 212 73 416 234 194 8 chr11 141620974 141621098 -7162374 - MIR SINE MIR -1 261 115 1999 93 11 0 chr11 141621146 141621424 -7162048 - AluSx SINE Alu -31 281 1 1805 123 24 14 chr11 141621426 141621719 -7161753 - AluSx SINE Alu -10 302 7 250 119 0 24 chr11 141621787 141621829 -7161643 + FLAM_A SINE Alu 83 123 -10 760 176 0 0 chr11 141621829 141621954 -7161518 + AluJb SINE Alu 183 307 -5 506 301 124 14 chr11 141622402 141622611 -7160861 - MIR SINE MIR -14 248 17 1697 153 0 0 chr11 141622711 141622985 -7160487 + AluJb SINE Alu 23 296 -16 1717 155 10 10 chr11 141623005 141623302 -7160170 - AluSg SINE Alu -13 297 1 201 342 120 0 chr11 141623609 141623726 -7159746 + L2 LINE L2 3141 3271 -1 209 208 0 0 chr11 141623772 141623820 -7159652 + (TTAA)n Simple_repeat Simple_repeat 2 49 0 682 184 8 8 chr11 141623827 141623952 -7159520 - FLAM_C SINE Alu -16 127 3 2348 85 0 0 chr11 141624012 141624319 -7159153 + AluY SINE Alu 1 307 -4 38 85 0 0 chr11 141624337 141624431 -7159041 + AT_rich Low_complexity Low_complexity 1 94 0 628 189 13 20 chr11 141624508 141624661 -7158811 - AluSg/x SINE Alu 0 310 159 198 0 0 0 chr11 141624809 141624831 -7158641 + (A)n Simple_repeat Simple_repeat 1 22 0 443 301 55 23 chr11 141624881 141625137 -7158335 + AluSq SINE Alu 37 300 -3 2008 165 27 19 chr11 141625369 141625666 -7157806 - L1MA7 LINE L1 -2 6289 5996 1905 116 37 3 chr11 141625666 141625960 -7157512 - AluSx SINE Alu -8 304 1 2008 165 27 19 chr11 141625960 141626177 -7157295 - L1MA7 LINE L1 -295 5996 5662 2095 103 0 3 chr11 141626204 141626529 -7156943 - AluSq SINE Alu 0 313 2 2205 95 17 0 chr11 141626530 141626826 -7156646 - AluSx SINE Alu -11 301 1 1023 119 0 19 chr11 141627233 141627393 -7156079 - L1MA7 LINE L1 -618 5673 5517 * 1099 169 14 18 chr11 141627387 141627440 -7156032 + L1M2 LINE L1 5311 5363 -808 2152 95 0 3 chr11 141627440 141627734 -7155738 + AluSx SINE Alu 1 293 -19 1099 169 14 18 chr11 141627734 141627953 -7155519 + L1M2 LINE L1 5363 5587 -584 437 187 121 0 chr11 141628175 141628266 -7155206 - MLT1H LTR MaLR -6 549 448 620 277 128 17 chr11 141628325 141628560 -7154912 - MLT1H LTR MaLR -216 333 73 590 245 92 64 chr11 141628598 141628897 -7154575 + MLT1H LTR MaLR 1 327 -222 207 0 0 0 chr11 141629276 141629299 -7154173 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2006 118 3 3 chr11 141629449 141629746 -7153726 - AluSc SINE Alu -12 297 1 2187 107 3 0 chr11 141629813 141630113 -7153359 - AluSp SINE Alu -12 301 1 1008 187 163 27 chr11 141630118 141630249 -7153223 - AluJo SINE Alu -10 292 180 321 26 0 0 chr11 141630249 141630287 -7153185 + (TTA)n Simple_repeat Simple_repeat 2 39 0 1008 187 163 27 chr11 141630287 141630412 -7153060 - AluJo SINE Alu -122 180 1 2300 43 3 68 chr11 141630442 141630768 -7152704 + AluY SINE Alu 2 306 -5 2117 113 13 0 chr11 141630975 141631275 -7152197 + AluSx SINE Alu 1 304 -8 2010 248 49 25 chr11 141631309 141631979 -7151493 - L1MC4a LINE L1 -1795 6013 5328 458 248 21 41 chr11 141631987 141632132 -7151340 - MIR SINE MIR -55 207 66 2161 117 0 0 chr11 141633362 141633661 -7149811 + AluSx SINE Alu 1 299 -13 291 343 28 0 chr11 141633696 141633804 -7149668 + L3 LINE CR1 193 303 -1274 1640 75 0 5 chr11 141633999 141634212 -7149260 + AluSq SINE Alu 5 216 -97 4198 171 36 13 chr11 141634219 141635006 -7148466 + L1MB8 LINE L1 5374 6178 0 307 312 99 45 chr11 141635045 141635446 -7148026 + L2 LINE L2 2541 2959 -313 1336 161 4 29 chr11 141635581 141635823 -7147649 - AluJb SINE Alu -19 293 58 1161 187 37 14 chr11 141635824 141636038 -7147434 - MIR SINE MIR -36 226 8 245 295 93 29 chr11 141636054 141636193 -7147279 + L2 LINE L2 3132 3279 -34 3709 219 72 31 chr11 141636436 141636617 -7146855 - L1MC4a LINE L1 -16 7792 7620 2096 93 3 3 chr11 141636617 141636906 -7146566 - AluSg SINE Alu -19 291 3 3709 219 72 31 chr11 141636906 141637785 -7145687 - L1MC4a LINE L1 -188 7620 6689 1397 62 57 5 chr11 141637785 141637808 -7145664 + AluY SINE Alu 98 118 -193 441 0 0 0 chr11 141637808 141637857 -7145615 + (CA)n Simple_repeat Simple_repeat 2 50 0 1397 62 57 5 chr11 141637857 141638027 -7145445 + AluY SINE Alu 118 301 -10 529 173 230 14 chr11 141638027 141638166 -7145306 - L1MC4 LINE L1 -1063 6779 6554 417 100 0 0 chr11 141638167 141638227 -7145245 + Alu SINE Alu 2 61 -249 446 163 23 0 chr11 141638328 141638414 -7145058 + Alu SINE Alu 224 311 0 1224 222 84 3 chr11 141638415 141638749 -7144723 - L1MC4a LINE L1 -1213 6595 6235 1575 70 5 0 chr11 141638760 141638961 -7144511 - AluSp SINE Alu -16 297 96 2202 76 3 3 chr11 141639278 141639579 -7143893 - AluSx SINE Alu -11 301 1 430 323 36 52 chr11 141640030 141640222 -7143250 + MIR3 SINE MIR 17 205 -3 21 0 0 0 chr11 141640306 141640327 -7143145 + AT_rich Low_complexity Low_complexity 1 21 0 1506 171 29 41 chr11 141640423 141640738 -7142734 - AluJb SINE Alu -1 311 1 199 316 213 41 chr11 141640836 141641080 -7142392 + L2 LINE L2 3020 3305 -8 189 138 0 0 chr11 141641056 141641085 -7142387 - L2 LINE L2 -6 3307 3279 * 304 241 12 12 chr11 141641176 141641259 -7142213 + L1ME LINE L1 5459 5541 -621 1958 128 0 25 chr11 141641296 141641616 -7141856 - AluSx SINE Alu 0 312 1 2530 196 80 22 chr11 141641625 141642161 -7141311 + MLT1E2 LTR MaLR 60 626 0 1684 180 9 22 chr11 141642161 141642478 -7140994 + MLT1F LTR MaLR 228 540 -2 1997 132 0 7 chr11 141642745 141643055 -7140417 + AluSx SINE Alu 4 311 -1 2085 114 3 0 chr11 141645443 141645741 -7137731 - AluSx SINE Alu -13 299 1 300 270 26 52 chr11 141645755 141645870 -7137602 + L1MC4a LINE L1 6058 6169 -1639 264 350 58 6 chr11 141646724 141646887 -7136585 + MIR SINE MIR 41 212 -50 653 308 38 13 chr11 141647149 141647391 -7136081 - MIR SINE MIR -8 254 9 2274 64 0 0 chr11 141647439 141647719 -7135753 - AluSx SINE Alu -32 280 1 271 366 0 18 chr11 141647807 141647919 -7135553 - L2 LINE L2 -3 3269 3160 238 288 14 0 chr11 141648022 141648095 -7135377 - MIR SINE MIR -3 259 186 * 380 211 197 56 chr11 141648072 141648214 -7135258 + L2 LINE L2 3150 3311 -2 * 426 322 59 7 chr11 141648208 141648360 -7135112 - MIR SINE MIR -68 194 35 2233 104 3 0 chr11 141648619 141648926 -7134546 - AluSp SINE Alu -5 308 1 745 188 5 70 chr11 141649395 141649581 -7133891 + MIR SINE MIR 79 252 -10 289 251 44 128 chr11 141650425 141650642 -7132830 - MIR SINE MIR -6 256 70 2198 108 3 0 chr11 141650642 141650948 -7132524 + AluSq SINE Alu 1 307 -6 289 251 44 128 chr11 141650948 141651013 -7132459 - MIR SINE MIR -192 70 1 2043 147 0 6 chr11 141651849 141652162 -7131310 - AluSx SINE Alu -1 311 1 784 291 33 33 chr11 141652215 141652459 -7131013 + MIR SINE MIR 19 262 0 2156 84 37 3 chr11 141652460 141652757 -7130715 - AluY SINE Alu -4 307 1 32 103 0 0 chr11 141652915 141653031 -7130441 + AT_rich Low_complexity Low_complexity 1 116 0 834 159 30 0 chr11 141653031 141653163 -7130309 - AluJo SINE Alu -176 136 1 23 68 0 0 chr11 141653170 141653214 -7130258 + AT_rich Low_complexity Low_complexity 1 44 0 262 263 293 0 chr11 141653275 141653374 -7130098 - MIR SINE MIR -30 232 105 1796 131 0 70 chr11 141653482 141653670 -7129802 - AluJo SINE Alu -6 306 149 2155 114 0 0 chr11 141653670 141653968 -7129504 - AluSx SINE Alu -14 298 1 1796 131 0 70 chr11 141653968 141654108 -7129364 - AluJo SINE Alu -163 149 1 696 126 0 0 chr11 141654109 141654212 -7129260 - AluSp/q SINE Alu -48 265 163 359 268 49 0 chr11 141654312 141654499 -7128973 + L1ME3A LINE L1 5767 5969 -195 1911 115 0 64 chr11 141654534 141654711 -7128761 - AluSx SINE Alu -19 293 143 2454 64 0 6 chr11 141654711 141655023 -7128449 - AluY SINE Alu 0 311 2 1911 115 0 64 chr11 141655023 141655158 -7128314 - AluSx SINE Alu -169 143 1 319 235 92 0 chr11 141655167 141655265 -7128207 + L1ME3A LINE L1 6052 6158 -12 303 310 83 65 chr11 141655306 141655522 -7127950 - L1MC/D LINE L1 -2252 5556 5337 2029 73 36 11 chr11 141655527 141655825 -7127647 - AluSg SINE Alu 0 305 1 1044 199 81 112 chr11 141656083 141656406 -7127066 - MLT1F1 LTR MaLR -184 383 73 2114 105 7 0 chr11 141656406 141656701 -7126771 - AluSq SINE Alu -11 302 6 1044 199 81 112 chr11 141656701 141656770 -7126702 - MLT1F1 LTR MaLR -494 73 3 2089 105 0 32 chr11 141656944 141657257 -7126215 + AluSg SINE Alu 2 304 -6 516 231 150 89 chr11 141657565 141657669 -7125803 - MIR SINE MIR 0 262 166 1715 166 33 0 chr11 141657669 141657971 -7125501 + AluSx SINE Alu 1 312 0 516 231 150 89 chr11 141657971 141658113 -7125359 - MIR SINE MIR -96 166 1 1811 122 28 3 chr11 141658394 141658681 -7124791 - AluSg SINE Alu -16 294 1 2112 109 13 0 chr11 141658683 141658987 -7124485 - AluSx SINE Alu -4 308 1 198 254 153 0 chr11 141661057 141661116 -7122356 - MIR SINE MIR -117 145 78 512 194 84 159 chr11 141661175 141661324 -7122148 + MER4A LTR ERV1 1 160 -504 2030 113 7 0 chr11 141661324 141661629 -7121843 - AluSx SINE Alu 0 307 1 512 194 84 159 chr11 141661629 141661824 -7121648 + MER4A LTR ERV1 160 320 -344 2087 120 0 13 chr11 141661841 141662157 -7121315 - AluSx SINE Alu 0 312 1 970 82 15 0 chr11 141662157 141662291 -7121181 - AluSq/x SINE Alu -176 137 2 900 176 0 18 chr11 141662819 141662989 -7120483 + AluJb SINE Alu 142 308 -4 1935 137 0 26 chr11 141662994 141663136 -7120336 + AluSx SINE Alu 3 147 -165 2321 88 3 0 chr11 141663136 141663444 -7120028 + AluSp SINE Alu 1 309 -4 1935 137 0 26 chr11 141663444 141663614 -7119858 + AluSx SINE Alu 147 307 -5 2022 115 0 0 chr11 141663621 141663924 -7119548 + AluSc SINE Alu 1 303 0 2329 85 3 0 chr11 141663983 141664290 -7119182 - AluSp SINE Alu -5 308 1 2165 110 7 0 chr11 141664694 141665004 -7118468 - AluSq SINE Alu -1 312 1 325 154 105 167 chr11 141665142 141665196 -7118276 + MER112 DNA MER1_type 7 63 -197 1739 119 0 0 chr11 141665196 141665439 -7118033 + AluSx SINE Alu 14 256 -56 325 154 105 167 chr11 141665439 141665546 -7117926 + MER112 DNA MER1_type 63 158 -102 2432 56 0 37 chr11 141665564 141665886 -7117586 + AluY SINE Alu 1 310 -1 2102 90 38 0 chr11 141665898 141666187 -7117285 + AluSp SINE Alu 1 300 -13 1485 124 120 40 chr11 141666244 141666519 -7116953 + AluSc SINE Alu 1 297 -12 304 269 119 0 chr11 141666584 141666718 -7116754 + MIR SINE MIR 65 214 -48 937 233 34 19 chr11 141666812 141667095 -7116377 - PABL_B LTR ERV1 0 667 368 2026 141 0 0 chr11 141667176 141667481 -7115991 - AluSx SINE Alu -3 309 5 260 320 54 61 chr11 141667483 141667780 -7115692 - PABL_A LTR ERV1 -318 342 48 265 368 65 19 chr11 141668089 141668244 -7115228 + L2 LINE L2 2920 3081 -191 231 61 0 0 chr11 141668349 141668382 -7115090 + (CA)n Simple_repeat Simple_repeat 1 33 0 2255 92 0 0 chr11 141668382 141668676 -7114796 - AluSg SINE Alu -16 294 1 1990 134 0 7 chr11 141668679 141668978 -7114494 - AluSg SINE Alu -13 297 1 2117 114 0 0 chr11 141668988 141669286 -7114186 - AluSg SINE Alu -12 298 1 228 118 29 0 chr11 141669299 141669333 -7114139 - AluSx SINE Alu -16 304 270 1781 119 0 73 chr11 141669447 141669749 -7113723 - AluSx SINE Alu -32 280 1 21 0 0 0 chr11 141669848 141669869 -7113603 + AT_rich Low_complexity Low_complexity 1 21 0 1705 155 20 0 chr11 141670183 141670487 -7112985 - AluJb SINE Alu -2 310 1 664 194 8 16 chr11 141670652 141670776 -7112696 - FLAM_A SINE Alu -10 123 1 692 217 0 0 chr11 141670895 141671015 -7112457 - FLAM_A SINE Alu -13 120 1 421 221 114 30 chr11 141671028 141671159 -7112313 + L2 LINE L2 3172 3313 0 899 235 62 40 chr11 141671353 141671381 -7112091 - MER31B LTR ERV1 0 466 440 1660 119 97 4 chr11 141671381 141671650 -7111822 - AluSx SINE Alu -18 294 1 899 235 62 40 chr11 141671650 141672034 -7111438 - MER31B LTR ERV1 -26 440 7 1849 126 31 0 chr11 141672161 141672455 -7111017 + AluSx SINE Alu 1 303 -9 1024 168 0 0 chr11 141672457 141672624 -7110848 + AluSg/x SINE Alu 134 300 -10 1381 147 11 128 chr11 141672879 141673232 -7110240 - AluJo SINE Alu 0 312 1 1055 181 0 0 chr11 141673239 141673410 -7110062 - FAM SINE Alu -4 171 1 2040 122 30 0 chr11 141673413 141673708 -7109764 - AluSx SINE Alu -7 305 2 2212 105 0 0 chr11 141674314 141674608 -7108864 - AluSq SINE Alu -19 294 1 189 0 0 0 chr11 141674608 141674629 -7108843 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1117 227 3 25 chr11 141674634 141674782 -7108690 - AluJo SINE Alu -30 282 141 2100 72 45 7 chr11 141674782 141675073 -7108399 - AluSg1 SINE Alu -7 302 1 1117 227 3 25 chr11 141675073 141675210 -7108262 - AluJo SINE Alu -171 141 3 184 239 22 22 chr11 141675313 141675359 -7108113 - MIR3 SINE MIR -1 207 162 197 329 61 0 chr11 141675547 141675629 -7107843 + MIR SINE MIR 162 248 -14 361 307 81 54 chr11 141675903 141676169 -7107303 - L2 LINE L2 -578 2736 2458 2097 74 10 42 chr11 141676169 141676478 -7106994 + AluSx SINE Alu 1 299 -13 361 307 81 54 chr11 141676478 141676543 -7106929 - L2 LINE L2 -856 2458 2396 2095 98 14 7 chr11 141677192 141677487 -7105985 - AluSx SINE Alu -15 297 1 1829 130 80 64 chr11 141677690 141677982 -7105490 + LTR8A LTR ERV1 1 302 -425 1849 149 3 3 chr11 141677982 141678277 -7105195 + AluJb SINE Alu 1 295 -17 1829 130 80 64 chr11 141678277 141678360 -7105112 + LTR8A LTR ERV1 302 382 -345 2242 94 0 0 chr11 141678360 141678659 -7104813 - AluSc SINE Alu -10 299 1 1670 124 76 0 chr11 141678662 141678937 -7104535 - AluSx SINE Alu -16 296 1 305 333 108 17 chr11 141678968 141679088 -7104384 + L2 LINE L2 3134 3264 -8 * 307 191 29 76 chr11 141679084 141679189 -7104283 - MIR3 SINE MIR -42 166 67 210 171 0 0 chr11 141679763 141679804 -7103668 + CT-rich Low_complexity Low_complexity 2 42 0 2145 111 0 0 chr11 141679913 141680210 -7103262 - AluSx SINE Alu -15 297 1 1272 123 223 0 chr11 141680210 141680460 -7103012 - AluSx SINE Alu -5 307 1 2048 112 0 10 chr11 141680470 141680766 -7102706 - AluSg SINE Alu -17 293 1 324 253 212 0 chr11 141680905 141681004 -7102468 - MIR3 SINE MIR -26 182 63 249 256 73 61 chr11 141681162 141681244 -7102228 + MIR SINE MIR 65 147 -115 422 113 0 14 chr11 141681425 141681496 -7101976 + (TCCC)n Simple_repeat Simple_repeat 3 72 0 2024 138 3 3 chr11 141681500 141681811 -7101661 - AluSx SINE Alu -1 311 1 2202 94 10 0 chr11 141681890 141682197 -7101275 - AluSx SINE Alu -2 310 1 869 72 43 36 chr11 141682197 141682335 -7101137 - MER30 DNA MER1_type -91 139 1 631 122 20 0 chr11 141682341 141682439 -7101033 + LTR49 LTR ERV1 492 591 -4 387 0 0 0 chr11 141682464 141682507 -7100965 + (TG)n Simple_repeat Simple_repeat 1 43 0 180 368 172 12 chr11 141682572 141682735 -7100737 + MIR SINE MIR 1 189 -73 202 261 0 22 chr11 141682747 141682793 -7100679 + L2 LINE L2 3210 3254 -18 2385 61 0 3 chr11 141682820 141683116 -7100356 + AluY SINE Alu 1 295 -16 541 238 92 12 chr11 141683232 141683427 -7100045 - MIR SINE MIR -58 204 3 1500 201 14 3 chr11 141683603 141683896 -7099576 + AluJo SINE Alu 1 296 -16 253 212 8 16 chr11 141684232 141684327 -7099145 + GA-rich Low_complexity Low_complexity 1 95 -412 1606 183 42 65 chr11 141684327 141684710 -7098762 - MLT1A2 LTR MaLR 0 374 1 253 212 8 16 chr11 141684710 141684744 -7098728 + GA-rich Low_complexity Low_complexity 95 507 0 2254 99 3 3 chr11 141684983 141685295 -7098177 + AluSx SINE Alu 1 312 0 339 338 64 25 chr11 141685588 141685792 -7097680 - L2 LINE L2 -866 2448 2237 553 371 26 4 chr11 141685959 141686188 -7097284 - L3 LINE CR1 -399 1178 945 1318 239 115 14 chr11 141686215 141686633 -7096839 - MLT1C LTR MaLR -4 463 4 226 265 0 41 chr11 141686896 141686994 -7096478 + (TCTCTG)n Simple_repeat Simple_repeat 2 95 0 233 324 0 0 chr11 141686998 141687069 -7096403 + (CA)n Simple_repeat Simple_repeat 1 71 0 2446 59 3 0 chr11 141687397 141687703 -7095769 - AluY SINE Alu -4 307 1 34 0 0 0 chr11 141687709 141687743 -7095729 + AT_rich Low_complexity Low_complexity 1 34 0 198 0 0 0 chr11 141688006 141688028 -7095444 + (CA)n Simple_repeat Simple_repeat 2 23 0 501 317 135 28 chr11 141688060 141688423 -7095049 + L2 LINE L2 2460 2861 -453 1096 146 0 22 chr11 141688429 141688614 -7094858 - AluSg/x SINE Alu 0 312 132 575 318 134 25 chr11 141688673 141688860 -7094612 + L2 LINE L2 2912 3077 -236 1457 136 34 90 chr11 141688860 141689183 -7094289 + AluJb SINE Alu 2 306 -6 575 318 134 25 chr11 141689183 141689354 -7094118 + L2 LINE L2 3077 3309 -4 2265 97 0 7 chr11 141689654 141689964 -7093508 + AluSq SINE Alu 1 308 -5 713 137 29 23 chr11 141689980 141690155 -7093317 + GA-rich Low_complexity Low_complexity 4 179 0 1801 134 16 22 chr11 141691213 141691527 -7091945 + AluJo SINE Alu 1 312 0 2233 100 13 0 chr11 141691584 141691893 -7091579 + AluSp SINE Alu 1 313 0 2308 90 0 3 chr11 141692007 141692319 -7091153 + AluY SINE Alu 1 311 0 1021 177 16 0 chr11 141692595 141692781 -7090691 - MER5A DNA MER1_type 0 189 1 498 242 175 38 chr11 141692859 141693070 -7090402 - MIR SINE MIR 0 262 23 2071 104 0 0 chr11 141693141 141693452 -7090020 - AluSx SINE Alu 0 312 1 195 152 0 0 chr11 141693970 141694016 -7089456 + (TG)n Simple_repeat Simple_repeat 1 46 0 262 363 58 40 chr11 141694409 141694734 -7088738 + L2 LINE L2 2623 2953 -361 192 255 64 0 chr11 141698868 141698915 -7084557 + L2 LINE L2 3264 3313 0 386 291 128 0 chr11 141699035 141699183 -7084289 - MIR SINE MIR -92 170 4 1445 239 86 61 chr11 141699433 141699956 -7083516 + MLT1H LTR MaLR 1 536 -13 768 175 0 29 chr11 141700062 141700199 -7083273 + FLAM_C SINE Alu 2 134 -9 1103 174 14 28 chr11 141700215 141700427 -7083045 - MER20 DNA MER1_type 0 219 11 2307 82 3 13 chr11 141700723 141701039 -7082433 + AluSq SINE Alu 1 313 0 1680 173 7 20 chr11 141701434 141701600 -7081872 - AluJo SINE Alu -15 297 130 426 65 0 0 chr11 141701600 141701662 -7081810 + (TTTA)n Simple_repeat Simple_repeat 3 64 0 1990 124 3 0 chr11 141701662 141701944 -7081528 - AluSp SINE Alu -30 283 1 1680 173 7 20 chr11 141701944 141702077 -7081395 - AluJo SINE Alu -180 132 1 374 323 25 38 chr11 141703695 141703853 -7079619 + MER91A DNA MER1_type 2 157 -39 323 216 31 93 chr11 141703861 141703958 -7079514 - L1MC4 LINE L1 -1339 6703 6613 511 153 12 12 chr11 141703978 141704063 -7079409 - FRAM SINE Alu -27 149 65 307 327 44 9 chr11 141704613 141704743 -7078729 + MIR SINE MIR 3 130 -78 1234 148 53 168 chr11 141704845 141705257 -7078215 - MLT1A1 LTR MaLR 0 365 1 1837 160 0 13 chr11 141705556 141705869 -7077603 + AluJb SINE Alu 2 310 -2 286 260 29 10 chr11 141706427 141706531 -7076941 + CT-rich Low_complexity Low_complexity 2 107 0 1710 164 10 10 chr11 141707001 141707300 -7076172 + AluSx SINE Alu 3 301 -11 192 335 91 17 chr11 141707308 141707538 -7075934 + L2 LINE L2 2714 2960 -354 1792 170 0 10 chr11 141708185 141708496 -7074976 - AluJo SINE Alu 0 312 5 259 305 28 99 chr11 141708566 141708586 -7074886 - MIR3 SINE MIR -42 166 146 1967 118 4 0 chr11 141708586 141708890 -7074582 - AluSx SINE Alu 0 305 1 259 305 28 99 chr11 141708890 141708975 -7074497 - MIR3 SINE MIR -62 146 70 1048 200 137 48 chr11 141708975 141709310 -7074162 - MLT1A1 LTR MaLR 0 365 1 259 305 28 99 chr11 141709310 141709343 -7074129 - MIR3 SINE MIR -138 70 36 495 221 48 35 chr11 141709881 141710026 -7073446 + MIR SINE MIR 46 192 -70 214 255 0 0 chr11 141710247 141710294 -7073178 + L3b LINE CR1 1285 1331 -252 242 296 11 57 chr11 141710327 141710415 -7073057 - L2 LINE L2 0 3313 3230 231 189 0 0 chr11 141710473 141710526 -7072946 + CT-rich Low_complexity Low_complexity 3 55 0 265 264 126 0 chr11 141710747 141710830 -7072642 - MLT1L LTR MaLR -374 241 148 693 216 22 7 chr11 141710830 141710969 -7072503 + Charlie1 DNA MER1_type 1 141 -2620 1274 201 86 49 chr11 141710994 141711446 -7072026 + Charlie1 DNA MER1_type 2267 2735 -26 257 272 87 0 chr11 141711562 141711665 -7071807 + L1ME4a LINE L1 6010 6121 0 21 0 0 0 chr11 141711716 141711737 -7071735 + AT_rich Low_complexity Low_complexity 1 21 0 236 317 142 28 chr11 141711809 141712134 -7071338 - L2 LINE L2 -1526 1788 1427 758 160 0 8 chr11 141712974 141713093 -7070379 - FLAM_C SINE Alu -15 118 1 1011 234 33 41 chr11 141713095 141713496 -7069976 - L1MA4 LINE L1 0 6304 5935 1964 94 0 4 chr11 141714210 141714477 -7068995 - AluSg SINE Alu -6 304 39 282 203 72 0 chr11 141714549 141714618 -7068854 - MIR SINE MIR -70 192 119 2751 124 39 0 chr11 141714650 141715060 -7068412 - MSTC LTR MaLR 0 428 3 2531 87 132 5 chr11 141715105 141715485 -7067987 - MSTA LTR MaLR 0 428 1 183 239 196 65 chr11 141715642 141715734 -7067738 + L2 LINE L2 3166 3269 -3 1952 171 36 11 chr11 141715852 141716208 -7067264 - MLT1A1 LTR MaLR 0 365 1 241 262 52 99 chr11 141716714 141716947 -7066525 - L2 LINE L2 -216 3056 2835 2392 83 3 0 chr11 141717267 141717579 -7065893 + AluSp SINE Alu 1 313 0 418 245 29 152 chr11 141717583 141717787 -7065685 + MIR SINE MIR 81 259 -3 269 296 143 15 chr11 141717873 141718036 -7065436 - MIR SINE MIR -57 205 20 314 0 49 0 chr11 141718268 141718309 -7065163 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 929 83 0 0 chr11 141718309 141718430 -7065042 - AluSq/x SINE Alu -192 121 1 206 217 83 17 chr11 141718527 141718587 -7064885 + L2 LINE L2 3155 3218 -54 4356 115 16 13 chr11 141719102 141719735 -7063737 - MER41B LTR ERV1 0 635 1 191 238 0 0 chr11 141719916 141719958 -7063514 - L3b LINE CR1 -210 1373 1332 180 0 0 0 chr11 141720221 141720241 -7063231 + (GA)n Simple_repeat Simple_repeat 2 21 0 1672 125 0 58 chr11 141720411 141720629 -7062843 - AluSx SINE Alu 0 312 114 2265 69 0 13 chr11 141720629 141720935 -7062537 + AluY SINE Alu 2 303 -8 1672 125 0 58 chr11 141720935 141721011 -7062461 - AluSx SINE Alu -198 114 35 1983 132 0 3 chr11 141721021 141721325 -7062147 - AluSx SINE Alu -9 303 1 2152 105 3 13 chr11 141721793 141722107 -7061365 + AluSx SINE Alu 1 311 -1 462 319 43 53 chr11 141722399 141722628 -7060844 + L1MC4a LINE L1 4489 4719 -1427 2177 119 0 3 chr11 141722628 141722939 -7060533 + AluSx SINE Alu 1 310 -2 462 319 43 53 chr11 141722939 141723382 -7060090 + L1MC4a LINE L1 4719 5154 -992 970 233 96 133 chr11 141723489 141724433 -7059039 + L1MC4a LINE L1 5313 6221 -1587 1439 223 18 79 chr11 141724563 141724940 -7058532 - LTR37B LTR ERV1 -2 466 124 747 205 16 79 chr11 141724940 141725018 -7058454 - MER45A DNA AcHobo -1403 178 97 2070 130 0 3 chr11 141725018 141725326 -7058146 + AluSq SINE Alu 1 307 -6 747 205 16 79 chr11 141725326 141725437 -7058035 - MER45A DNA AcHobo -1484 97 1 1439 223 18 79 chr11 141725437 141725552 -7057920 - LTR37B LTR ERV1 -344 124 4 402 242 15 83 chr11 141725566 141725698 -7057774 + MIR SINE MIR 70 192 -70 2301 53 40 7 chr11 141727170 141727470 -7056002 + AluY SINE Alu 1 310 -1 599 221 0 30 chr11 141727492 141727623 -7055849 + FLAM_C SINE Alu 2 128 -5 237 242 76 102 chr11 141727777 141727934 -7055538 + L1MC5 LINE L1 7763 7915 -46 249 262 135 32 chr11 141728365 141728491 -7054981 + MER5B DNA MER1_type 40 178 0 726 94 0 0 chr11 141728600 141728696 -7054776 - AluS SINE Alu -216 96 1 21 0 0 0 chr11 141728859 141728880 -7054592 + AT_rich Low_complexity Low_complexity 1 21 0 1978 139 7 0 chr11 141729377 141729678 -7053794 - AluSx SINE Alu -4 308 6 255 146 0 21 chr11 141729683 141729731 -7053741 + (GA)n Simple_repeat Simple_repeat 2 48 0 280 191 24 24 chr11 141729736 141729820 -7053652 + GA-rich Low_complexity Low_complexity 1 84 0 365 248 51 34 chr11 141730038 141730155 -7053317 - MIR SINE MIR -63 199 81 186 103 0 0 chr11 141730304 141730333 -7053139 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 258 327 69 0 chr11 141731437 141731538 -7051934 + L3b LINE CR1 1352 1459 -124 336 301 98 74 chr11 141731563 141731766 -7051706 - MIR SINE MIR -48 214 7 3436 166 25 62 chr11 141731852 141731911 -7051561 - L1MB3 LINE L1 -3 6180 6120 1809 121 21 0 chr11 141731911 141732193 -7051279 - AluSg SINE Alu -22 288 1 3436 166 25 62 chr11 141732193 141732739 -7050733 - L1MB3 LINE L1 -63 6120 5604 2318 58 3 3 chr11 141732739 141733032 -7050440 + AluSp SINE Alu 1 293 -20 3436 166 25 62 chr11 141733032 141733149 -7050323 - L1MB3 LINE L1 -579 5604 5484 180 77 0 0 chr11 141733154 141733180 -7050292 + (TA)n Simple_repeat Simple_repeat 1 26 0 2065 125 6 10 chr11 141733269 141733582 -7049890 + AluSx SINE Alu 1 312 0 274 191 11 101 chr11 141734446 141734535 -7048937 - MLT1L LTR MaLR -339 276 196 231 254 0 0 chr11 141734502 141734557 -7048915 - MLT1J1 LTR MaLR -321 125 71 * 252 299 77 50 chr11 141734834 141735055 -7048417 - MIR SINE MIR -34 228 2 417 292 75 12 chr11 141735577 141735738 -7047734 + MIR3 SINE MIR 19 189 -19 526 320 41 6 chr11 141736087 141736259 -7047213 + MIR3 SINE MIR 16 193 -15 335 281 161 30 chr11 141736604 141736650 -7046822 - MIR SINE MIR -9 253 214 2017 109 0 3 chr11 141736650 141736943 -7046529 - AluY SINE Alu -1 310 19 335 281 161 30 chr11 141736943 141737095 -7046377 - MIR SINE MIR -48 214 29 266 167 42 0 chr11 141737735 141737783 -7045689 - L2 LINE L2 -12 3260 3211 2039 117 3 3 chr11 141738041 141738341 -7045131 + AluSq SINE Alu 1 300 -13 355 367 124 6 chr11 141738487 141738664 -7044808 + L2 LINE L2 3073 3270 -2 219 36 0 0 chr11 141738683 141738711 -7044761 + (TGGA)n Simple_repeat Simple_repeat 3 30 0 192 326 0 65 chr11 141738854 141738946 -7044526 + MIR SINE MIR 47 132 -130 295 88 228 0 chr11 141740492 141740549 -7042923 + L1MC4 LINE L1 7957 8026 -16 21 0 0 0 chr11 141740552 141740573 -7042899 + AT_rich Low_complexity Low_complexity 1 21 0 1532 170 89 0 chr11 141740650 141740932 -7042540 + AluJo SINE Alu 1 307 -5 35 24 0 0 chr11 141741060 141741102 -7042370 + AT_rich Low_complexity Low_complexity 1 42 0 212 250 0 19 chr11 141741126 141741178 -7042294 + MIR SINE MIR 84 134 -128 220 346 37 0 chr11 141741365 141741446 -7042026 + L2 LINE L2 3228 3311 -2 275 290 28 19 chr11 141741499 141741606 -7041866 + MIR SINE MIR 44 151 -57 281 204 21 84 chr11 141742466 141742657 -7040815 + GA-rich Low_complexity Low_complexity 1 179 0 224 130 22 0 chr11 141742873 141742919 -7040553 + GA-rich Low_complexity Low_complexity 1 47 0 21 36 0 0 chr11 141743130 141743158 -7040314 + GC_rich Low_complexity Low_complexity 1 28 0 207 304 0 18 chr11 141743831 141743887 -7039585 + polypurine Low_complexity Low_complexity 60 114 0 356 344 51 6 chr11 141744313 141744470 -7039002 + MIR3 SINE MIR 19 182 -26 665 249 5 88 chr11 141744868 141745073 -7038399 - MIR SINE MIR -44 218 31 424 353 15 96 chr11 141746020 141746425 -7037047 + L2 LINE L2 2851 3222 -50 189 327 0 0 chr11 141747017 141747072 -7036400 - MIR3 SINE MIR -6 202 148 385 271 90 33 chr11 141747229 141747351 -7036121 - MIR3 SINE MIR -46 162 34 441 305 89 26 chr11 141747630 141747820 -7035652 + MIR3 SINE MIR 7 208 0 2047 116 23 3 chr11 141748202 141748505 -7034967 - AluSx SINE Alu -3 309 1 537 250 29 72 chr11 141748723 141748931 -7034541 - MIR SINE MIR -51 211 13 510 125 0 0 chr11 141749743 141749823 -7033649 + (GGA)n Simple_repeat Simple_repeat 2 81 0 236 358 44 44 chr11 141750012 141750149 -7033323 - L2 LINE L2 -15 3257 3121 589 301 66 14 chr11 141751003 141751216 -7032256 + MIR SINE MIR 39 262 0 2017 110 7 17 chr11 141751410 141751709 -7031763 + AluSx SINE Alu 1 296 -16 449 293 52 23 chr11 141751935 141752109 -7031363 - MIR SINE MIR -5 257 79 189 0 0 0 chr11 141752822 141752843 -7030629 + (TC)n Simple_repeat Simple_repeat 1 21 0 209 200 0 0 chr11 141753398 141753438 -7030034 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 25 0 0 68 chr11 141753817 141753836 -7029636 + AT_rich Low_complexity Low_complexity 1 20 -21 2021 94 14 3 chr11 141753836 141754122 -7029350 + AluSx SINE Alu 1 289 -23 25 0 0 68 chr11 141754122 141754146 -7029326 + AT_rich Low_complexity Low_complexity 20 41 0 545 277 95 12 chr11 141754156 141754357 -7029115 - MIR SINE MIR -48 214 1 409 219 26 61 chr11 141754549 141754663 -7028809 + MER81 DNA DNA 5 114 0 2133 121 7 0 chr11 141754700 141755005 -7028467 + AluSx SINE Alu 1 307 -5 445 204 0 32 chr11 141755005 141755098 -7028374 + MER5A DNA MER1_type 17 106 -83 582 268 83 53 chr11 141757313 141757615 -7025857 + L2 LINE L2 2834 3144 -169 1721 142 139 6 chr11 141757645 141757962 -7025510 - MLT1A1 LTR MaLR 0 365 7 247 294 33 98 chr11 141757993 141758085 -7025387 + L2 LINE L2 3203 3288 -25 * 401 258 11 11 chr11 141758069 141758158 -7025314 - MIR SINE MIR -143 119 31 352 234 117 0 chr11 141758248 141758325 -7025147 - MER5A DNA MER1_type -83 106 21 385 264 9 27 chr11 141758363 141758473 -7024999 - MIR SINE MIR -80 128 21 426 283 132 15 chr11 141758853 141759058 -7024414 - L3 LINE CR1 -22 1555 1327 803 144 0 8 chr11 141759144 141759269 -7024203 + FLAM_C SINE Alu 1 124 -9 462 263 78 39 chr11 141759269 141759448 -7024024 - MIR SINE MIR -12 250 65 432 240 184 29 chr11 141759602 141759794 -7023678 - MIR SINE MIR 0 262 42 1991 103 3 38 chr11 141760068 141760388 -7023084 + AluSx SINE Alu 3 311 -1 457 181 58 29 chr11 141760391 141760529 -7022943 - L1MA10 LINE L1 -7 6327 6186 236 171 0 0 chr11 141760542 141760577 -7022895 + Alu SINE Alu 1 35 -264 212 364 78 45 chr11 141761086 141761328 -7022144 + L2 LINE L2 3064 3313 0 241 311 40 0 chr11 141762109 141762183 -7021289 - MIR SINE MIR -3 259 183 1062 212 54 47 chr11 141762608 141762709 -7020763 + AluJo SINE Alu 1 100 -212 1724 124 81 73 chr11 141762709 141763081 -7020391 + THE1C LTR MaLR 1 375 0 1062 212 54 47 chr11 141763081 141763276 -7020196 + AluJo SINE Alu 100 299 -13 1759 164 3 28 chr11 141764113 141764431 -7019041 - AluJb SINE Alu -2 310 1 430 229 36 0 chr11 141764485 141764568 -7018904 + MIR SINE MIR 67 152 -110 329 174 58 0 chr11 141764567 141764636 -7018836 - MIR SINE MIR -115 147 75 * 373 284 31 31 chr11 141765281 141765443 -7018029 + L1ME4a LINE L1 5524 5685 -436 1649 178 0 13 chr11 141765445 141765759 -7017713 + AluJb SINE Alu 1 310 -2 1555 103 0 0 chr11 141765820 141766033 -7017439 + AluY SINE Alu 1 213 -98 287 128 0 0 chr11 141766034 141766081 -7017391 + AluY SINE Alu 253 299 -1 636 229 161 35 chr11 141766081 141766391 -7017081 + L1ME4a LINE L1 5759 6107 -14 2171 109 3 3 chr11 141766487 141766798 -7016674 + AluSx SINE Alu 1 311 -1 619 308 36 90 chr11 141766987 141767344 -7016128 + L2 LINE L2 2890 3227 -45 303 331 166 45 chr11 141767349 141767490 -7015982 + L3b LINE CR1 1174 1297 -286 2003 121 0 3 chr11 141767490 141767788 -7015684 + AluSx SINE Alu 1 297 -15 303 331 166 45 chr11 141767788 141767852 -7015620 + L3b LINE CR1 1297 1352 -231 3816 141 74 59 chr11 141767852 141768619 -7014853 + MER4E LTR ERV1 1 779 0 303 331 166 45 chr11 141768619 141768744 -7014728 + L3b LINE CR1 1352 1545 -38 270 0 0 0 chr11 141770244 141770274 -7013198 + (TCTG)n Simple_repeat Simple_repeat 2 31 0 202 259 35 0 chr11 141770430 141770488 -7012984 - L3 LINE CR1 -2 1575 1516 2354 85 0 0 chr11 141770646 141770952 -7012520 + AluY SINE Alu 1 306 -5 286 218 50 69 chr11 141770992 141771093 -7012379 + MIR SINE MIR 88 186 -76 255 316 0 26 chr11 141771098 141771174 -7012298 - MIR SINE MIR 0 262 189 1594 133 8 0 chr11 141771296 141771544 -7011928 - L1MA6 LINE L1 0 6300 6051 250 362 32 10 chr11 141772848 141772969 -7010503 - MIR SINE MIR -75 133 28 1923 154 0 0 chr11 141773627 141773932 -7009540 + AluSx SINE Alu 1 305 -7 183 336 82 33 chr11 141774258 141774380 -7009092 - MIR SINE MIR -100 162 35 451 144 93 21 chr11 141774613 141774710 -7008762 - MER5A DNA MER1_type -77 112 9 284 371 56 37 chr11 141774771 141775094 -7008378 + L2 LINE L2 2569 2897 -417 1703 156 0 28 chr11 141775296 141775617 -7007855 - AluJb SINE Alu 0 312 1 217 162 0 0 chr11 141775906 141775943 -7007529 + L2 LINE L2 3236 3272 0 267 339 23 23 chr11 141776218 141776311 -7007161 + MER5B DNA MER1_type 1 96 -82 512 207 148 35 chr11 141776311 141776480 -7006992 - MER5A DNA MER1_type -1 188 1 267 339 23 23 chr11 141776480 141776516 -7006956 + MER5B DNA MER1_type 95 130 -48 1575 178 3 29 chr11 141776528 141776843 -7006629 - AluJb SINE Alu -2 310 4 2236 98 0 0 chr11 141777236 141777531 -7005941 - AluSx SINE Alu -13 299 5 2243 100 0 3 chr11 141777926 141778235 -7005237 - AluSx SINE Alu -4 308 1 250 152 0 22 chr11 141779223 141779269 -7004203 + L2 LINE L2 3205 3249 -23 580 315 38 25 chr11 141779295 141779533 -7003939 - MIR SINE MIR -4 258 18 1047 98 38 54 chr11 141780482 141780666 -7002806 - AluSq SINE Alu -3 310 130 1923 124 7 0 chr11 141780671 141780954 -7002518 - AluSp SINE Alu -23 290 6 230 325 24 24 chr11 141780958 141781041 -7002431 + MIR3 SINE MIR 119 201 -7 1082 202 34 19 chr11 141781663 141781871 -7001601 - MLT1F LTR MaLR -3 564 354 1324 209 62 78 chr11 141781882 141782255 -7001217 - MLT1A2 LTR MaLR -7 367 1 1588 196 77 10 chr11 141782255 141782567 -7000905 - MLT1F LTR MaLR -209 333 1 245 264 132 38 chr11 141782648 141782754 -7000718 + MIR SINE MIR 77 192 -70 190 203 14 149 chr11 141782899 141782941 -7000531 - MIR3 SINE MIR -1 207 178 1732 167 0 7 chr11 141782941 141783235 -7000237 + AluJo SINE Alu 1 292 -20 190 203 14 149 chr11 141783235 141783266 -7000206 - MIR3 SINE MIR -30 178 144 341 337 0 20 chr11 141783500 141783601 -6999871 - MIR SINE MIR -86 122 24 1770 157 0 10 chr11 141784246 141784558 -6998914 + AluJb SINE Alu 1 309 -3 1000 122 0 0 chr11 141785511 141785650 -6997822 - MLT1B LTR MaLR -12 378 240 2095 92 0 7 chr11 141785654 141785990 -6997482 - AluSc SINE Alu 0 334 1 328 347 18 47 chr11 141786599 141786769 -6996703 + L2 LINE L2 3149 3313 0 1823 135 49 0 chr11 141787229 141787517 -6995955 + AluSx SINE Alu 1 302 -10 1218 56 0 17 chr11 141787588 141787767 -6995705 + (TTCC)n Simple_repeat Simple_repeat 3 178 0 456 77 0 0 chr11 141787767 141787832 -6995640 + (TTTC)n Simple_repeat Simple_repeat 2 66 0 296 24 0 24 chr11 141788001 141788043 -6995429 + (TG)n Simple_repeat Simple_repeat 2 42 0 1885 142 23 0 chr11 141788129 141788464 -6995008 + AluSx SINE Alu 3 344 0 812 277 166 28 chr11 141788523 141788848 -6994624 + MLT1K LTR MaLR 133 502 -86 828 215 17 11 chr11 141788854 141789031 -6994441 - MLT1C LTR MaLR 0 467 290 211 320 20 50 chr11 141789926 141790026 -6993446 + MIR SINE MIR 1 97 -165 * 824 280 62 9 chr11 141790025 141790250 -6993222 - MIR SINE MIR -1 261 25 918 188 12 0 chr11 141790255 141790415 -6993057 + FRAM SINE Alu 1 162 -4 737 326 202 38 chr11 141790459 141790655 -6992817 - L2 LINE L2 0 3272 3110 798 175 0 0 chr11 141790655 141790781 -6992691 + FLAM_C SINE Alu 2 127 -6 737 326 202 38 chr11 141790781 141791670 -6991802 - L2 LINE L2 -162 3110 1983 185 326 147 0 chr11 141791711 141791806 -6991666 + L2 LINE L2 3128 3236 -36 441 255 57 0 chr11 141791820 141791926 -6991546 - MIR SINE MIR 0 262 151 298 191 0 9 chr11 141791936 141791997 -6991475 - Alu SINE Alu -255 45 1 332 258 135 11 chr11 141792090 141792179 -6991293 + MIR SINE MIR 58 157 -105 2083 113 0 6 chr11 141792468 141792779 -6990693 + AluSx SINE Alu 1 309 -3 1398 158 42 7 chr11 141793002 141793286 -6990186 - MER33 DNA MER1_type -11 313 20 2132 91 7 0 chr11 141793563 141793850 -6989622 + AluSp SINE Alu 2 290 -23 229 237 85 0 chr11 141793859 141793918 -6989554 - L2 LINE L2 -14 3299 3236 997 238 60 52 chr11 141793979 141794119 -6989353 - MLT1E LTR MaLR 0 593 449 1910 150 0 17 chr11 141794119 141794419 -6989053 + AluSx SINE Alu 2 296 -16 997 238 60 52 chr11 141794419 141794547 -6988925 - MLT1E LTR MaLR -144 449 323 768 259 70 37 chr11 141794560 141794859 -6988613 - MLT1E LTR MaLR -173 453 103 2707 13 3 0 chr11 141795306 141795614 -6987858 + AluYb8 SINE Alu 1 309 -9 1922 140 7 3 chr11 141795946 141796246 -6987226 + AluJb SINE Alu 1 301 -11 27 29 0 0 chr11 141796459 141796493 -6986979 + AT_rich Low_complexity Low_complexity 1 34 0 899 198 8 122 chr11 141796612 141796710 -6986762 + MER20 DNA MER1_type 1 108 -111 2019 166 47 40 chr11 141796710 141796748 -6986724 - MSTB LTR MaLR 0 426 390 2563 52 0 0 chr11 141796748 141797058 -6986414 + AluY SINE Alu 1 310 -1 2019 166 47 40 chr11 141797058 141797441 -6986031 - MSTB LTR MaLR -36 390 2 899 198 8 122 chr11 141797441 141797589 -6985883 + MER20 DNA MER1_type 108 219 0 1897 107 33 0 chr11 141798347 141798687 -6984785 - AluSg SINE Alu 0 349 1 551 219 86 64 chr11 141798699 141798886 -6984586 - MIR3 SINE MIR -2 206 16 1246 213 29 52 chr11 141799016 141799278 -6984194 - MER58B DNA MER1_type -2079 341 86 2020 118 0 7 chr11 141799278 141799567 -6983905 + AluSx SINE Alu 3 289 -23 1246 213 29 52 chr11 141799567 141799614 -6983858 - MER58B DNA MER1_type -2334 86 39 23 0 0 0 chr11 141800256 141800279 -6983193 + AT_rich Low_complexity Low_complexity 1 23 0 1829 14 0 0 chr11 141800883 141801090 -6982382 + AluY SINE Alu 105 311 0 2089 109 3 3 chr11 141801368 141801671 -6981801 + AluSx SINE Alu 5 307 -5 218 245 0 0 chr11 141801767 141801816 -6981656 + G-rich Low_complexity Low_complexity 1 49 0 2191 111 0 0 chr11 141802956 141803254 -6980218 - AluSx SINE Alu -14 298 1 1999 115 14 17 chr11 141803411 141803707 -6979765 - AluSx SINE Alu -17 295 1 232 91 127 0 chr11 141803808 141803863 -6979609 - MER31A LTR ERV1 0 485 424 1025 205 102 54 chr11 141803868 141803961 -6979511 - MER39 LTR ERV1 0 647 560 2104 98 7 0 chr11 141803961 141804246 -6979226 - AluSx SINE Alu -17 295 9 1025 205 102 54 chr11 141804246 141804632 -6978840 - MER39 LTR ERV1 -87 560 1 1051 257 93 8 chr11 141804636 141804986 -6978486 - MER31B LTR ERV1 -79 406 14 1689 151 43 7 chr11 141805164 141805463 -6978009 + AluSx SINE Alu 1 310 -2 2355 111 0 0 chr11 141805473 141805780 -6977692 + AluSx SINE Alu 1 307 -5 212 255 20 0 chr11 141805969 141806020 -6977452 + MER91A DNA MER1_type 91 142 -54 201 315 135 0 chr11 141806234 141806316 -6977156 - MIR SINE MIR -72 190 97 2399 112 0 0 chr11 141806316 141806629 -6976843 + AluSq SINE Alu 1 313 0 2482 96 0 0 chr11 141807089 141807401 -6976071 + AluSx SINE Alu 1 312 0 298 170 0 0 chr11 141808387 141808434 -6975038 + MIR SINE MIR 36 82 -126 300 84 84 24 chr11 141808504 141808670 -6974802 + (TA)n Simple_repeat Simple_repeat 1 176 0 26 98 0 0 chr11 141808670 141808752 -6974720 + AT_rich Low_complexity Low_complexity 1 82 0 291 137 58 14 chr11 141808753 141808892 -6974580 + (TTATA)n Simple_repeat Simple_repeat 5 149 0 1981 110 14 31 chr11 141808901 141809191 -6974281 - AluSq SINE Alu -28 285 1 577 307 20 10 chr11 141809202 141809404 -6974068 + MIR SINE MIR 18 221 -41 1714 155 65 0 chr11 141809557 141809834 -6973638 - AluJo SINE Alu -15 297 3 1084 206 58 65 chr11 141809996 141810178 -6973294 - L1M4 LINE L1 -2191 3955 3773 2303 90 10 7 chr11 141810178 141810477 -6972995 - AluSx SINE Alu -12 300 1 1084 206 58 65 chr11 141810477 141810691 -6972781 - L1M4 LINE L1 -2373 3773 3562 2384 116 0 0 chr11 141810810 141811121 -6972351 + AluSx SINE Alu 1 311 -1 25 75 0 0 chr11 141811198 141811251 -6972221 + AT_rich Low_complexity Low_complexity 1 53 0 2393 93 0 0 chr11 141811314 141811616 -6971856 - AluY SINE Alu -9 302 1 676 184 8 8 chr11 141811676 141811801 -6971671 + AluJ SINE Alu 3 127 -185 209 208 0 0 chr11 141811808 141811856 -6971616 + (TTAA)n Simple_repeat Simple_repeat 2 49 0 2427 89 0 6 chr11 141812326 141812639 -6970833 + AluSx SINE Alu 1 311 -1 290 44 0 44 chr11 141812647 141812692 -6970780 + (GGGA)n Simple_repeat Simple_repeat 2 44 0 207 0 0 0 chr11 141812823 141812846 -6970626 + (A)n Simple_repeat Simple_repeat 1 23 0 932 158 67 0 chr11 141812862 141813026 -6970446 + AluJ SINE Alu 132 306 -6 277 298 99 41 chr11 141813026 141813197 -6970275 + L2 LINE L2 3129 3309 -4 2393 97 0 7 chr11 141813497 141813807 -6969665 + AluSq SINE Alu 1 308 -5 698 155 19 13 chr11 141813816 141813971 -6969501 + GA-rich Low_complexity Low_complexity 4 159 0 1898 135 16 22 chr11 141815047 141815359 -6968113 + AluJo SINE Alu 1 310 -2 2358 100 13 0 chr11 141815419 141815728 -6967744 + AluSp SINE Alu 1 313 0 2413 96 0 3 chr11 141815842 141816154 -6967318 + AluY SINE Alu 1 311 0 1011 177 16 0 chr11 141816430 141816616 -6966856 - MER5A DNA MER1_type 0 189 1 424 240 181 34 chr11 141816701 141816905 -6966567 - MIR SINE MIR -6 256 23 2195 104 0 0 chr11 141816976 141817287 -6966185 - AluSx SINE Alu 0 312 1 195 152 0 0 chr11 141817805 141817851 -6965621 + (TG)n Simple_repeat Simple_repeat 1 46 0 321 291 128 0 chr11 141822870 141823018 -6960454 - MIR SINE MIR -92 170 4 1405 241 86 61 chr11 141823268 141823791 -6959681 + MLT1H LTR MaLR 1 536 -13 763 175 0 29 chr11 141823897 141824034 -6959438 + FLAM_C SINE Alu 2 134 -9 1097 174 14 28 chr11 141824050 141824262 -6959210 - MER20 DNA MER1_type 0 219 11 2447 82 3 13 chr11 141824558 141824874 -6958598 + AluSq SINE Alu 1 313 0 1793 173 7 20 chr11 141825269 141825435 -6958037 - AluJo SINE Alu -15 297 130 450 0 0 0 chr11 141825435 141825485 -6957987 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 2116 124 3 0 chr11 141825485 141825767 -6957705 - AluSp SINE Alu -30 283 1 1793 173 7 20 chr11 141825767 141825900 -6957572 - AluJo SINE Alu -180 132 1 310 329 25 38 chr11 141827518 141827676 -6955796 + MER91A DNA MER1_type 2 157 -39 381 142 33 17 chr11 141827681 141827801 -6955671 + (TA)n Simple_repeat Simple_repeat 1 122 0 505 153 12 12 chr11 141827801 141827886 -6955586 - FRAM SINE Alu -27 149 65 271 316 51 0 chr11 141828467 141828565 -6954907 + MIR SINE MIR 27 129 -133 1237 148 53 168 chr11 141828667 141829079 -6954393 - MLT1A1 LTR MaLR 0 365 1 1943 160 0 13 chr11 141829378 141829690 -6953782 + AluJb SINE Alu 2 309 -3 286 260 29 10 chr11 141830248 141830352 -6953120 + CT-rich Low_complexity Low_complexity 2 107 0 1823 164 10 10 chr11 141830822 141831121 -6952351 + AluSx SINE Alu 3 301 -11 244 333 39 8 chr11 141831129 141831258 -6952214 + L2 LINE L2 2714 2846 -468 1900 170 0 10 chr11 141832006 141832317 -6951155 - AluJo SINE Alu 0 312 5 2089 114 4 0 chr11 141832407 141832711 -6950761 - AluSx SINE Alu 0 305 1 193 337 22 22 chr11 141832738 141832796 -6950676 - MIR SINE MIR -81 127 67 1064 197 137 48 chr11 141832796 141833131 -6950341 - MLT1A1 LTR MaLR 0 365 1 193 337 22 22 chr11 141833131 141833164 -6950308 - MIR SINE MIR -140 68 36 433 221 48 35 chr11 141833702 141833847 -6949625 + MIR SINE MIR 46 192 -70 197 255 0 0 chr11 141834068 141834115 -6949357 + L3b LINE CR1 1285 1331 -252 207 296 11 57 chr11 141834148 141834236 -6949236 - L2 LINE L2 0 3313 3230 243 189 0 0 chr11 141834294 141834347 -6949125 + CT-rich Low_complexity Low_complexity 3 55 0 264 264 126 0 chr11 141834568 141834651 -6948821 - MLT1L LTR MaLR -374 241 148 692 216 22 7 chr11 141834651 141834790 -6948682 + Charlie1 DNA MER1_type 1 141 -2620 1329 197 86 49 chr11 141834815 141835267 -6948205 + Charlie1 DNA MER1_type 2267 2735 -26 282 262 87 0 chr11 141835383 141835486 -6947986 + L1ME4a LINE L1 6010 6121 0 21 0 0 0 chr11 141835536 141835557 -6947915 + AT_rich Low_complexity Low_complexity 1 21 0 202 264 11 11 chr11 141835923 141836014 -6947458 + CT-rich Low_complexity Low_complexity 1 91 0 1607 201 14 3 chr11 141836353 141836646 -6946826 - AluJo SINE Alu -16 296 1 482 248 78 14 chr11 141836822 141837017 -6946455 + MIR SINE MIR 3 204 -58 1769 59 0 14 chr11 141837133 141837348 -6946124 - AluY SINE Alu -16 295 83 2323 111 0 0 chr11 141837348 141837646 -6945826 - AluSx SINE Alu -14 298 1 1123 117 155 48 chr11 141838365 141838595 -6944877 + AluSx SINE Alu 58 309 0 2317 94 16 3 chr11 141839112 141839419 -6944053 + AluSp SINE Alu 1 311 -2 289 252 55 31 chr11 141839823 141839950 -6943522 - MIR SINE MIR -46 216 87 266 273 91 11 chr11 141840050 141840138 -6943334 - MIR SINE MIR -44 164 69 1518 254 109 46 chr11 141840163 141840703 -6942769 - MER21B LTR ERV1 -149 714 141 420 205 0 0 chr11 141840715 141840798 -6942674 - FLAM_A SINE Alu -59 83 1 286 326 33 0 chr11 141840836 141840928 -6942544 - MER21B LTR ERV1 -752 111 17 3614 113 2 4 chr11 141841350 141841862 -6941610 + MER9 LTR ERVK 1 511 0 1620 153 61 0 chr11 141842161 141842422 -6941050 - AluJb SINE Alu -11 301 25 4313 110 11 11 chr11 141842425 141843051 -6940421 - MER41B LTR ERV1 -9 626 1 325 328 33 8 chr11 141843083 141843205 -6940267 - MIR SINE MIR -116 146 22 2521 59 0 31 chr11 141844199 141844520 -6938952 + AluY SINE Alu 1 311 0 46 62 0 0 chr11 141844628 141844709 -6938763 + AT_rich Low_complexity Low_complexity 1 81 0 1564 169 20 17 chr11 141844709 141845011 -6938461 + AluSp SINE Alu 5 307 -6 1043 144 166 147 chr11 141845130 141845409 -6938063 - MLT1C LTR MaLR -1 466 173 1771 159 3 24 chr11 141845409 141845704 -6937768 - AluJb SINE Alu -23 289 1 1043 144 166 147 chr11 141845704 141845881 -6937591 - MLT1C LTR MaLR -294 173 1 427 259 34 111 chr11 141847091 141847416 -6936056 - L2 LINE L2 -49 3223 2924 2097 130 34 0 chr11 141847704 141847996 -6935476 - AluSx SINE Alu -10 302 1 1064 141 18 6 chr11 141847996 141848151 -6935321 - AluY SINE Alu -21 290 131 2485 61 0 10 chr11 141848151 141848447 -6935025 - AluY SINE Alu -12 299 7 1064 141 18 6 chr11 141848447 141848461 -6935011 - AluY SINE Alu -180 131 119 910 269 93 58 chr11 141848477 141848895 -6934577 + MLT1H1 LTR MaLR 56 495 -60 1816 131 13 49 chr11 141848895 141849200 -6934272 - AluJo SINE Alu -18 294 1 910 269 93 58 chr11 141849200 141849264 -6934208 + MLT1H1 LTR MaLR 495 555 0 1100 188 46 33 chr11 141849292 141849355 -6934117 - L1M4 LINE L1 -1382 4764 4703 2053 146 0 3 chr11 141849355 141849657 -6933815 - AluSx SINE Alu -11 301 1 1100 188 46 33 chr11 141849657 141849896 -6933576 - L1M4 LINE L1 -1443 4703 4458 1747 125 24 61 chr11 141849919 141850253 -6933219 - AluJo SINE Alu 0 323 1 1729 181 0 42 chr11 141850256 141850565 -6932907 - AluJo SINE Alu -16 296 1 226 269 19 0 chr11 141850602 141850654 -6932818 + L2 LINE L2 3246 3298 -15 1358 154 87 15 chr11 141850754 141851020 -6932452 - L1MB2 LINE L1 -4 6167 5883 2418 106 0 0 chr11 141851032 141851335 -6932137 - AluSx SINE Alu -9 303 1 2207 68 50 0 chr11 141851603 141851883 -6931589 + AluY SINE Alu 1 294 -17 691 200 8 0 chr11 141851892 141852017 -6931455 + FLAM_C SINE Alu 1 126 -7 1493 181 52 24 chr11 141852047 141852335 -6931137 + AluJb SINE Alu 1 296 -16 199 286 48 24 chr11 141852552 141852636 -6930836 - L2 LINE L2 -1 3312 3227 2330 83 0 10 chr11 141852655 141852955 -6930517 - AluSg SINE Alu -13 297 1 281 304 54 18 chr11 141853001 141853113 -6930359 + L2 LINE L2 2635 2750 -564 305 346 95 62 chr11 141853334 141853577 -6929895 + L2 LINE L2 3022 3272 0 382 340 56 12 chr11 141853937 141854099 -6929373 - MIR3 SINE MIR -6 202 34 2163 113 3 0 chr11 141854174 141854485 -6928987 + AluSx SINE Alu 1 312 0 2202 72 4 7 chr11 141854624 141854902 -6928570 - AluY SINE Alu -10 301 25 314 318 27 27 chr11 141855037 141855185 -6928287 + L2 LINE L2 2898 3045 -227 376 313 76 11 chr11 141855278 141855495 -6927977 + MIR SINE MIR 9 244 -18 2141 129 0 0 chr11 141855503 141855798 -6927674 - AluSq SINE Alu -18 295 1 287 207 110 12 chr11 141855877 141855959 -6927513 - MIR SINE MIR -76 186 97 863 258 62 27 chr11 141856011 141856267 -6927205 + L1MC/D LINE L1 5524 5788 -2020 2323 103 0 0 chr11 141856527 141856827 -6926645 - AluSg SINE Alu -10 300 1 1287 27 0 0 chr11 141857807 141857954 -6925518 - AluY SINE Alu -12 299 153 2374 81 0 0 chr11 141858123 141858418 -6925054 - AluSc SINE Alu -14 295 1 2075 94 63 7 chr11 141858506 141858792 -6924680 - AluSq SINE Alu -11 302 1 2337 79 27 0 chr11 141859033 141859325 -6924147 - AluY SINE Alu -11 300 1 483 155 0 0 chr11 141859353 141859437 -6924035 + (CCA)n Simple_repeat Simple_repeat 1 84 0 201 74 0 0 chr11 141859435 141859462 -6924010 + (CAG)n Simple_repeat Simple_repeat 1 27 0 * 711 281 34 25 chr11 141859469 141859704 -6923768 - MIR SINE MIR -13 249 13 465 138 0 0 chr11 141859752 141859832 -6923640 + (CAGA)n Simple_repeat Simple_repeat 3 82 0 210 143 0 0 chr11 141859898 141859933 -6923539 + (CA)n Simple_repeat Simple_repeat 2 36 0 209 309 66 52 chr11 141860186 141860322 -6923150 + MIR SINE MIR 21 158 -104 2091 111 0 10 chr11 141860532 141860854 -6922618 + AluSx SINE Alu 1 319 0 28 29 0 0 chr11 141861054 141861089 -6922383 + AT_rich Low_complexity Low_complexity 1 35 0 826 271 54 18 chr11 141861383 141861715 -6921757 - L1MC/D LINE L1 -2199 5609 5266 2045 111 0 4 chr11 141862741 141863042 -6920430 + AluSc SINE Alu 1 300 0 432 219 70 0 chr11 141863044 141863158 -6920314 - MIR SINE MIR -80 182 61 2175 125 6 6 chr11 141864358 141864670 -6918802 - AluSx SINE Alu 0 312 1 972 169 13 93 chr11 141865230 141865467 -6918005 + MER20 DNA MER1_type 2 219 0 269 222 211 0 chr11 141865844 141865934 -6917538 - MIR SINE MIR -83 179 71 1789 124 27 0 chr11 141865999 141866281 -6917191 - AluSx SINE Alu 0 306 18 23 33 0 0 chr11 141866415 141866445 -6917027 + AT_rich Low_complexity Low_complexity 1 30 0 463 227 42 25 chr11 141866550 141866669 -6916803 - L2 LINE L2 -1 3312 3192 2243 108 3 0 chr11 141867620 141867916 -6915556 + AluSx SINE Alu 1 297 -15 2564 136 39 2 chr11 141868458 141868869 -6914603 - MSTA LTR MaLR -2 426 1 2269 119 0 0 chr11 141868874 141869177 -6914295 - AluSg SINE Alu -7 303 1 218 290 73 16 chr11 141869181 141869305 -6914167 + L3 LINE CR1 1247 1377 -200 243 146 0 0 chr11 141869404 141869445 -6914027 + (TG)n Simple_repeat Simple_repeat 2 42 0 587 225 27 64 chr11 141869609 141869796 -6913676 - MIR SINE MIR -8 254 75 2207 109 3 3 chr11 141870157 141870460 -6913012 - AluSq SINE Alu -10 303 1 208 191 0 43 chr11 141871175 141871222 -6912250 + GA-rich Low_complexity Low_complexity 2 46 0 2211 94 3 3 chr11 141871888 141872174 -6911298 - AluSx SINE Alu -26 286 1 1744 166 0 7 chr11 141872644 141872963 -6910509 - AluJo SINE Alu 0 317 1 250 152 43 0 chr11 141873883 141873929 -6909543 + L2 LINE L2 3266 3313 0 1494 113 58 73 chr11 141874054 141874381 -6909091 + MER33 DNA MER1_type 3 324 0 488 68 0 27 chr11 141875980 141876054 -6907418 + (TTTTC)n Simple_repeat Simple_repeat 2 73 0 303 214 0 0 chr11 141876069 141876139 -6907333 + CT-rich Low_complexity Low_complexity 3 72 0 871 158 0 0 chr11 141876144 141876277 -6907195 - FLAM_C SINE Alu 0 133 1 241 183 0 17 chr11 141879979 141880039 -6903433 + G-rich Low_complexity Low_complexity 3 61 0 2634 49 0 0 chr11 141880446 141880754 -6902718 + AluSg SINE Alu 1 308 -2 212 335 28 14 chr11 141883799 141883935 -6899537 - MIR3 SINE MIR -67 141 14 198 0 0 0 chr11 141884373 141884395 -6899077 + (TG)n Simple_repeat Simple_repeat 2 23 0 621 301 88 61 chr11 141885524 141886015 -6897457 + L3 LINE CR1 1074 1577 0 336 261 82 37 chr11 141886265 141886399 -6897073 - MIR3 SINE MIR -19 189 50 205 324 200 5 chr11 141886523 141886708 -6896764 + L3 LINE CR1 1330 1550 -27 244 246 66 0 chr11 141886757 141886818 -6896654 - MIR SINE MIR -69 139 75 2458 69 0 28 chr11 141887082 141887402 -6896070 - AluY SINE Alu 0 311 1 2058 139 0 16 chr11 141887474 141887646 -6895826 - AluSx SINE Alu -7 305 139 1578 118 97 76 chr11 141887646 141887935 -6895537 - AluSx SINE Alu -17 295 1 2058 139 0 16 chr11 141887935 141888072 -6895400 - AluSx SINE Alu -173 139 1 2515 280 38 65 chr11 141888424 141889867 -6893605 - L1MEd LINE L1 -4819 1491 42 263 186 51 0 chr11 141891298 141891357 -6892115 - LTR16A LTR ERVL 0 450 389 804 297 101 12 chr11 141891362 141891699 -6891773 - LTR16A LTR ERVL -32 418 52 2225 96 4 0 chr11 141891796 141892117 -6891355 + AluSq SINE Alu 1 322 0 234 355 68 34 chr11 141892289 141892438 -6891034 - L2 LINE L2 -147 3125 2983 2341 99 0 0 chr11 141892438 141892732 -6890740 + AluSg SINE Alu 1 294 -16 234 355 68 34 chr11 141892732 141893027 -6890445 - L2 LINE L2 -289 2983 2660 2270 117 10 0 chr11 141893461 141893768 -6889704 - AluSx SINE Alu -2 310 1 248 294 98 16 chr11 141894151 141894345 -6889127 + MIR SINE MIR 47 256 -6 1382 118 4 18 chr11 141895739 141895967 -6887505 + L1MB8 LINE L1 5953 6177 -1 2334 100 3 0 chr11 141896956 141897257 -6886215 + AluSx SINE Alu 1 302 -10 230 153 17 102 chr11 141897823 141897882 -6885590 - MLT1L LTR MaLR -226 389 336 1033 102 0 0 chr11 141898271 141898408 -6885064 + AluJb SINE Alu 1 137 -175 23 33 0 0 chr11 141898433 141898463 -6885009 + AT_rich Low_complexity Low_complexity 1 30 0 207 0 0 0 chr11 141898750 141898773 -6884699 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2093 116 0 0 chr11 141898780 141899056 -6884416 - AluSx SINE Alu -36 276 1 582 181 0 107 chr11 141899660 141899809 -6883663 + FLAM_A SINE Alu 1 133 0 561 192 80 16 chr11 141901195 141901320 -6882152 - FLAM_C SINE Alu 0 133 1 240 59 0 0 chr11 141901434 141901468 -6882004 + (CA)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr11 141903273 141903297 -6880175 + AT_rich Low_complexity Low_complexity 1 24 0 2094 144 0 0 chr11 141903587 141903885 -6879587 + AluSx SINE Alu 1 298 -14 1945 119 3 89 chr11 141904955 141905291 -6878181 - AluSx SINE Alu -5 307 1 26 50 0 0 chr11 141905731 141905771 -6877701 + AT_rich Low_complexity Low_complexity 1 40 0 2155 236 87 86 chr11 141910774 141910801 -6872671 + HAL1 LINE L1 1 26 -2481 369 0 0 0 chr11 141910801 141910842 -6872630 + (CA)n Simple_repeat Simple_repeat 2 42 0 2155 236 87 86 chr11 141910842 141911679 -6871793 + HAL1 LINE L1 26 866 -1641 2617 246 122 26 chr11 141911680 141912717 -6870755 + HAL1 LINE L1 1009 2144 -363 2331 88 0 10 chr11 141912722 141913030 -6870442 + AluY SINE Alu 1 305 -6 231 158 0 0 chr11 141913031 141913069 -6870403 + HAL1 LINE L1 2448 2485 -22 2122 120 14 0 chr11 141913489 141913780 -6869692 - AluSx SINE Alu -17 295 1 445 285 72 19 chr11 141914212 141914238 -6869234 + MIR SINE MIR 45 68 -194 2231 82 17 0 chr11 141914238 141914529 -6868943 + AluY SINE Alu 1 296 -15 445 285 72 19 chr11 141914529 141914709 -6868763 + MIR SINE MIR 68 262 0 2103 116 3 7 chr11 141916369 141916662 -6866810 + AluSx SINE Alu 1 292 -20 1751 152 42 3 chr11 141916670 141916953 -6866519 + AluSx SINE Alu 1 294 -18 669 137 0 0 chr11 141917529 141917624 -6865848 - AluSg/x SINE Alu -15 295 201 1957 146 0 23 chr11 141919391 141919699 -6863773 - AluJo SINE Alu -11 301 1 2182 110 10 0 chr11 141920163 141920463 -6863009 - AluSp SINE Alu -5 308 6 2325 60 0 3 chr11 141920595 141920901 -6862571 - AluY SINE Alu 0 305 1 2054 114 50 0 chr11 141921105 141921385 -6862087 + AluSx SINE Alu 1 294 -18 778 288 187 13 chr11 141921520 141922198 -6861274 - L2 LINE L2 -5 3308 2505 2129 102 6 22 chr11 141922203 141922518 -6860954 - AluSq SINE Alu -3 310 1 2090 110 24 0 chr11 141922552 141922842 -6860630 - AluSp SINE Alu -16 297 1 2190 108 7 3 chr11 141923048 141923343 -6860129 + AluSq SINE Alu 7 302 -11 552 271 60 0 chr11 141923447 141923646 -6859826 + L1ME3A LINE L1 5769 5979 -191 2027 115 0 67 chr11 141923671 141923849 -6859623 - AluSx SINE Alu -19 293 143 2583 64 0 10 chr11 141923849 141924162 -6859310 - AluY SINE Alu 0 311 2 2027 115 0 67 chr11 141924162 141924297 -6859175 - AluSx SINE Alu -169 143 1 329 235 92 0 chr11 141924306 141924404 -6859068 + L1ME3A LINE L1 6052 6158 -12 2151 73 36 11 chr11 141924666 141924964 -6858508 - AluSg SINE Alu 0 305 1 1115 193 79 112 chr11 141925222 141925546 -6857926 - MLT1F1 LTR MaLR -184 383 73 2229 105 7 0 chr11 141925546 141925840 -6857632 - AluSq SINE Alu -12 301 6 1115 193 79 112 chr11 141925840 141925909 -6857563 - MLT1F1 LTR MaLR -494 73 3 262 123 130 201 chr11 141926002 141926082 -6857390 - LTR37B LTR ERV1 0 468 403 2212 105 0 32 chr11 141926082 141926395 -6857077 + AluSg SINE Alu 2 304 -6 262 123 130 201 chr11 141926395 141926468 -6857004 - LTR37B LTR ERV1 -65 403 326 415 231 150 89 chr11 141926703 141926807 -6856665 - MIR SINE MIR 0 262 166 1825 166 33 0 chr11 141926807 141927109 -6856363 + AluSx SINE Alu 1 312 0 415 231 150 89 chr11 141927109 141927251 -6856221 - MIR SINE MIR -96 166 1 1919 122 28 3 chr11 141927532 141927818 -6855654 - AluSg SINE Alu -17 293 1 2237 109 13 0 chr11 141927820 141928124 -6855348 - AluSx SINE Alu -4 308 1 479 189 53 0 chr11 141930315 141930410 -6853062 + MER4A LTR ERV1 1 100 -564 2026 132 24 3 chr11 141930468 141930764 -6852708 - AluSx SINE Alu -10 302 1 462 258 26 57 chr11 141930996 141931190 -6852282 - MIR SINE MIR -62 200 13 510 125 0 0 chr11 141932002 141932082 -6851390 + (GGA)n Simple_repeat Simple_repeat 2 81 0 190 358 44 44 chr11 141932271 141932408 -6851064 - L2 LINE L2 -15 3257 3121 1793 184 0 3 chr11 141934020 141934313 -6849159 + AluJb SINE Alu 1 292 -20 472 222 0 0 chr11 141934510 141934600 -6848872 + L2 LINE L2 3223 3312 -1 854 150 0 8 chr11 141934903 141935036 -6848436 + FLAM_C SINE Alu 2 133 0 2075 138 6 3 chr11 141935659 141935970 -6847502 + AluSx SINE Alu 1 312 0 231 229 0 0 chr11 141936374 141936435 -6847037 + GA-rich Low_complexity Low_complexity 4 64 0 730 144 40 16 chr11 141936909 141937034 -6846438 + FLAM_C SINE Alu 3 130 -3 350 231 0 0 chr11 141937115 141937180 -6846292 + HAL1 LINE L1 17 81 -2426 1094 137 38 27 chr11 141937180 141937363 -6846109 + AluJo SINE Alu 1 185 -127 2167 113 0 0 chr11 141937620 141937932 -6845540 + AluSx SINE Alu 1 312 0 473 226 322 38 chr11 141937934 141938071 -6845401 + HAL1 LINE L1 652 749 -1758 2408 73 3 7 chr11 141938071 141938373 -6845099 - AluY SINE Alu -10 301 1 473 226 322 38 chr11 141938373 141938527 -6844945 + HAL1 LINE L1 749 1026 -1481 362 211 89 84 chr11 141938539 141938729 -6844743 - MIR SINE MIR 0 262 72 290 196 65 33 chr11 141938824 141938916 -6844556 + HAL1 LINE L1 1172 1266 -1241 769 189 8 0 chr11 141938946 141939078 -6844394 - AluJo SINE Alu -178 134 2 359 277 99 0 chr11 141939090 141939231 -6844241 + HAL1 LINE L1 1287 1441 -1066 2134 134 0 0 chr11 141939232 141939531 -6843941 + AluSx SINE Alu 2 300 -12 2408 86 3 0 chr11 141939835 141940123 -6843349 + AluSp SINE Alu 1 292 -21 1047 123 0 0 chr11 141940123 141940286 -6843186 + (GA)n Simple_repeat Simple_repeat 2 164 0 2408 86 3 0 chr11 141940286 141940299 -6843173 + AluSp SINE Alu 292 303 -10 2279 109 0 16 chr11 141940783 141941086 -6842386 + AluSx SINE Alu 1 298 -14 2310 119 0 0 chr11 141941491 141941803 -6841669 + AluSx SINE Alu 1 312 0 277 299 123 0 chr11 141941826 141941980 -6841492 + MIR SINE MIR 32 204 -58 1281 95 0 0 chr11 141942093 141942251 -6841221 - AluSq SINE Alu -155 158 1 2178 121 0 3 chr11 141942628 141942933 -6840539 - AluSq SINE Alu -9 304 1 1498 193 143 14 chr11 141942953 141943424 -6840048 + MLT1F LTR MaLR 1 534 -8 1109 211 43 37 chr11 141943426 141943725 -6839747 - L1ME3A LINE L1 -15 6155 5855 1952 128 3 21 chr11 141943871 141944160 -6839312 + AluJo SINE Alu 1 284 -28 566 313 73 20 chr11 141944262 141944508 -6838964 + MIR SINE MIR 2 260 -2 812 154 0 22 chr11 141944613 141944749 -6838723 + FLAM_C SINE Alu 1 133 0 333 68 0 0 chr11 141944749 141944793 -6838679 + (GGGA)n Simple_repeat Simple_repeat 1 44 0 262 276 0 0 chr11 141945990 141946066 -6837406 - L3 LINE CR1 -428 1149 1074 2553 60 0 0 chr11 141946149 141946447 -6837025 + AluY SINE Alu 5 302 -9 2308 100 3 3 chr11 141946580 141946891 -6836581 + AluSq SINE Alu 1 311 -2 459 150 12 0 chr11 141947212 141947292 -6836180 + AluJb SINE Alu 47 127 -185 1776 123 36 0 chr11 141947787 141948040 -6835432 + AluSq SINE Alu 1 262 -51 258 330 154 5 chr11 141948221 141948409 -6835063 - L3 LINE CR1 -7 1570 1355 220 292 31 0 chr11 141948417 141948482 -6834990 + CT-rich Low_complexity Low_complexity 2 68 0 881 195 19 0 chr11 141948589 141948748 -6834724 - AluSg/x SINE Alu -17 295 134 2146 115 0 0 chr11 141948748 141949036 -6834436 - AluSg SINE Alu -14 296 9 565 337 182 19 chr11 141949110 141949688 -6833784 - L3 LINE CR1 -241 1336 665 2507 76 3 19 chr11 141950129 141950446 -6833026 - AluSp SINE Alu -1 312 1 239 197 30 38 chr11 141950517 141950649 -6832823 + CT-rich Low_complexity Low_complexity 2 132 0 347 287 64 32 chr11 141951303 141951460 -6832012 + L1MC4 LINE L1 7792 7953 -89 1506 137 4 59 chr11 141951554 141951687 -6831785 + AluJo SINE Alu 9 123 -189 2183 117 0 7 chr11 141951687 141951985 -6831487 + AluSx SINE Alu 1 296 -16 1506 137 4 59 chr11 141951985 141952107 -6831365 + AluJo SINE Alu 123 250 -62 1941 107 0 8 chr11 141952107 141952369 -6831103 + AluSx SINE Alu 36 295 -17 188 324 15 0 chr11 141952699 141952767 -6830705 + MIR SINE MIR 38 106 -102 2395 86 0 7 chr11 141953019 141953323 -6830149 - AluSx SINE Alu -10 302 1 209 208 0 0 chr11 141953792 141953840 -6829632 + (TTAA)n Simple_repeat Simple_repeat 4 51 0 676 184 8 8 chr11 141953847 141953972 -6829500 - FLAM_C SINE Alu -16 127 3 2393 93 0 0 chr11 141954032 141954334 -6829138 + AluY SINE Alu 1 302 -9 25 75 0 0 chr11 141954397 141954450 -6829022 + AT_rich Low_complexity Low_complexity 1 53 0 2384 116 0 0 chr11 141954527 141954838 -6828634 - AluSx SINE Alu -1 311 1 564 211 87 39 chr11 141954957 141955165 -6828307 + L1M4 LINE L1 3562 3779 -2367 2291 90 10 7 chr11 141955171 141955470 -6828002 + AluSx SINE Alu 1 300 -12 244 272 97 0 chr11 141955535 141955649 -6827823 + MIR SINE MIR 65 189 -73 937 233 34 19 chr11 141955763 141956046 -6827426 - PABL_B LTR ERV1 0 667 368 2136 141 0 0 chr11 141956127 141956432 -6827040 - AluSx SINE Alu -3 309 5 253 320 54 61 chr11 141956434 141956731 -6826741 - PABL_A LTR ERV1 -318 342 48 224 368 65 19 chr11 141957040 141957195 -6826277 + L2 LINE L2 2920 3081 -191 231 61 0 0 chr11 141957300 141957333 -6826139 + (CA)n Simple_repeat Simple_repeat 1 33 0 2325 92 0 7 chr11 141957333 141957628 -6825844 - AluSc SINE Alu -16 293 1 2032 128 3 26 chr11 141957635 141957805 -6825667 - AluSx SINE Alu -5 307 146 2451 88 3 0 chr11 141957805 141958113 -6825359 - AluSp SINE Alu -4 309 1 2032 128 3 26 chr11 141958113 141958248 -6825224 - AluSx SINE Alu -166 146 9 13108 196 112 81 chr11 142158249 142159517 -6623955 + L1P LINE L1 174 1402 -4744 234 330 46 9 chr11 142159517 142159626 -6623846 - MLT1I LTR MaLR -278 131 19 13108 196 112 81 chr11 142159626 142160402 -6623070 + L1P LINE L1 1402 2153 -3993 559 220 0 0 chr11 142160402 142160502 -6622970 - MER58B DNA MER1_type -1 340 241 13108 196 112 81 chr11 142160502 142161994 -6621478 + L1P LINE L1 2153 4033 -2113 231 140 20 40 chr11 142162120 142162170 -6621302 + MSTC LTR MaLR 178 226 -202 676 297 46 39 chr11 142162503 142163037 -6620435 + L1MC/D LINE L1 5114 5642 -758 2592 208 4 28 chr11 142163044 142163582 -6619890 + MLT-int LTR MaLR 138 662 -1073 282 224 0 15 chr11 142163704 142163771 -6619701 + MLT-int LTR MaLR 676 741 -994 1855 186 92 68 chr11 142163858 142164315 -6619157 + MLT1A1-int LTR MaLR 1268 1735 0 1756 196 13 30 chr11 142164315 142164682 -6618790 + MLT1A1 LTR MaLR 1 544 -5 229 241 17 0 chr11 142165743 142165801 -6617671 - MIR SINE MIR -62 146 88 256 213 33 33 chr11 142165804 142165865 -6617607 - 7SK RNA RNA 0 193 133 292 311 37 10 chr11 142166686 142166815 -6616657 + MIR SINE MIR 37 172 -36 1552 123 5 0 chr11 142167074 142167323 -6616149 + AluSg/x SINE Alu 70 310 0 647 202 6 60 chr11 142167735 142167918 -6615554 - MIR SINE MIR -32 230 58 21 0 0 0 chr11 142169487 142169508 -6613964 + AT_rich Low_complexity Low_complexity 1 21 0 1960 113 3 79 chr11 142169542 142169871 -6613601 + AluSx SINE Alu 1 304 -8 460 124 31 8 chr11 142170575 142170704 -6612768 + (TG)n Simple_repeat Simple_repeat 2 133 0 187 296 19 0 chr11 142171616 142171670 -6611802 - MIR SINE MIR -133 75 21 1208 232 129 65 chr11 142171884 142172225 -6611247 - L1ME2 LINE L1 -9 6155 5837 2042 149 10 0 chr11 142172225 142172533 -6610939 - AluSx SINE Alu -1 311 1 1208 232 129 65 chr11 142172533 142172821 -6610651 - L1ME2 LINE L1 -327 5837 5486 5656 197 43 41 chr11 142172891 142175321 -6608151 - L1MB8 LINE L1 -8 6170 3739 2138 89 0 4 chr11 142175479 142175749 -6607723 - AluSg SINE Alu -41 269 1 369 325 76 13 chr11 142177339 142177496 -6605976 + MIR SINE MIR 26 192 -70 22 0 0 0 chr11 142179163 142179185 -6604287 + AT_rich Low_complexity Low_complexity 1 22 0 895 246 19 0 chr11 142180123 142180334 -6603138 + MER20 DNA MER1_type 3 217 -2 315 345 0 62 chr11 142181438 142181583 -6601889 + MIR3 SINE MIR 30 165 -43 356 292 164 10 chr11 142181753 142181948 -6601524 + MIR SINE MIR 37 261 -1 265 271 52 0 chr11 142182224 142182320 -6601152 + MER103 DNA DNA 65 165 -1 223 280 0 133 chr11 142183421 142183564 -6599908 - MIR SINE MIR -74 188 65 784 274 81 62 chr11 142184103 142185174 -6598298 + L1MEd LINE L1 587 1697 -4613 191 100 0 25 chr11 142185847 142185887 -6597585 + (CA)n Simple_repeat Simple_repeat 1 39 0 186 103 0 0 chr11 142187339 142187368 -6596104 + (CAGAGA)n Simple_repeat Simple_repeat 2 30 0 264 368 31 16 chr11 142187684 142187877 -6595595 - MIR SINE MIR -46 216 21 221 297 36 27 chr11 142188681 142188792 -6594680 + MIR SINE MIR 79 190 -72 284 291 19 10 chr11 142190607 142190710 -6592762 + MER5A DNA MER1_type 1 104 -85 10267 26 6 7 chr11 142193685 142195665 -6587807 + L1PA4 LINE L1 4173 6155 0 3560 190 12 29 chr11 142195676 142196404 -6587068 + L1 LINE L1 3530 4245 -1901 28548 47 41 16 chr11 142196504 142200186 -6583286 - L1P LINE L1 -2373 3773 1 216 328 50 35 chr11 142200822 142201023 -6582449 - MIR SINE MIR -12 250 47 5371 35 0 0 chr11 142202357 142202983 -6580489 - L1PA4 LINE L1 -3 6152 5527 569 183 0 0 chr11 142203178 142203282 -6580190 - MIR SINE MIR -78 184 81 1606 178 51 66 chr11 142203441 142203835 -6579637 - MLT1B LTR MaLR -2 388 1 1698 184 3 0 chr11 142205373 142205655 -6577817 - AluJo SINE Alu -21 291 9 303 262 127 16 chr11 142206874 142207000 -6576472 - L2 LINE L2 -7 3306 3167 342 272 0 0 chr11 142207460 142207541 -6575931 + MLT1F LTR MaLR 1 81 -461 1017 215 151 18 chr11 142207579 142207863 -6575609 + MLT1F LTR MaLR 219 540 -2 586 365 87 0 chr11 142208038 142208394 -6575078 + L2 LINE L2 1861 2247 -1067 * 588 255 69 0 chr11 142208393 142208538 -6574934 + MIR SINE MIR 7 161 -101 744 302 57 54 chr11 142208672 142209236 -6574236 + L2 LINE L2 2291 2852 -462 645 188 9 0 chr11 142209233 142209568 -6573904 + (CA)n Simple_repeat Simple_repeat 1 338 0 * 273 29 0 0 chr11 142209814 142209848 -6573624 + (T)n Simple_repeat Simple_repeat 1 34 0 231 114 0 0 chr11 142210049 142210084 -6573388 + (GGGA)n Simple_repeat Simple_repeat 2 36 0 251 263 17 93 chr11 142210973 142211019 -6572453 - MER94 DNA DNA -19 115 67 1849 136 3 45 chr11 142211019 142211327 -6572145 - AluSx SINE Alu -17 295 1 251 263 17 93 chr11 142211327 142211398 -6572074 - MER94 DNA DNA -67 67 7 411 355 41 17 chr11 142212482 142212654 -6570818 + MIR3 SINE MIR 22 197 -11 506 306 38 6 chr11 142213401 142213561 -6569911 + MIR3 SINE MIR 18 182 -26 273 331 16 16 chr11 142214515 142214636 -6568836 + MIR3 SINE MIR 75 195 -13 219 114 0 0 chr11 142214688 142214723 -6568749 + (TG)n Simple_repeat Simple_repeat 2 36 0 773 162 0 11 chr11 142216194 142216373 -6567099 + CT-rich Low_complexity Low_complexity 2 178 0 244 267 33 50 chr11 142216682 142216802 -6566670 + LTR33 LTR ERVL 402 519 -2 635 215 256 0 chr11 142216892 142217064 -6566408 + MER20 DNA MER1_type 1 216 -3 198 345 27 27 chr11 142217100 142217210 -6566262 + L2 LINE L2 3184 3293 -20 342 0 0 0 chr11 142219479 142219517 -6563955 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 219 281 0 35 chr11 142219538 142219595 -6563877 - L2 LINE L2 -84 3188 3134 237 244 89 33 chr11 142220165 142220255 -6563217 - L3b LINE CR1 -199 1384 1290 330 353 72 44 chr11 142220561 142220966 -6562506 - L2 LINE L2 0 3272 2857 308 274 167 18 chr11 142221146 142221314 -6562158 - L2 LINE L2 0 3313 3121 558 261 93 43 chr11 142221566 142221846 -6561626 - L2 LINE L2 -5 3308 3015 2109 210 61 16 chr11 142222218 142222774 -6560698 - Charlie1a DNA MER1_type 0 1455 875 1221 204 15 96 chr11 142222768 142223101 -6560371 + MLT2B1 LTR ERVL 141 446 -74 * 461 173 14 14 chr11 142223127 142223266 -6560206 + (TA)n Simple_repeat Simple_repeat 1 139 0 252 59 0 0 chr11 142223261 142223295 -6560177 + (GA)n Simple_repeat Simple_repeat 2 35 0 * 316 95 0 0 chr11 142223295 142223337 -6560135 + MLT2B1 LTR ERVL 474 515 0 3226 234 37 44 chr11 142223343 142224209 -6559263 - Charlie1a DNA MER1_type -595 860 1 2966 206 84 69 chr11 142224821 142225358 -6558114 + MER21B LTR ERV1 10 566 -297 2900 111 0 5 chr11 142225358 142225735 -6557737 - THE1C LTR MaLR 0 375 1 2966 206 84 69 chr11 142225735 142226027 -6557445 + MER21B LTR ERV1 566 852 -11 377 279 162 19 chr11 142227123 142227277 -6556195 + MER5A DNA MER1_type 14 189 0 212 263 35 97 chr11 142227430 142227544 -6555928 - MER5A DNA MER1_type 0 189 83 425 213 91 46 chr11 142227587 142227767 -6555705 + MIR SINE MIR 33 218 -44 739 290 63 92 chr11 142227778 142228267 -6555205 + L2 LINE L2 2839 3313 0 345 296 129 27 chr11 142228779 142229301 -6554171 - L1ME4a LINE L1 -296 5825 5265 1843 45 60 41 chr11 142229923 142230191 -6553281 + AluY SINE Alu 1 273 -38 26209 35 7 0 chr11 142230291 142234070 -6549402 + L1PA4 LINE L1 2371 6155 0 6518 173 18 47 chr11 142234078 142235449 -6548023 + L1 LINE L1 3526 4855 -1291 1888 131 6 45 chr11 142235449 142235762 -6547710 - AluSx SINE Alu -11 301 1 2284 211 48 38 chr11 142235763 142236515 -6546957 - L1M4c LINE L1 -4545 2020 1041 233 250 0 18 chr11 142236530 142236586 -6546886 - L1M4c LINE L1 -5841 701 647 297 261 56 57 chr11 142236989 142237233 -6546239 - L1M4c LINE L1 -6255 391 1 183 254 91 0 chr11 142237233 142237288 -6546184 + L2 LINE L2 1295 1354 -1960 307 246 0 0 chr11 142237309 142237366 -6546106 - MER5C DNA MER1_type -267 57 1 1825 200 31 17 chr11 142237413 142237773 -6545699 + MLT1A1 LTR MaLR 1 365 0 426 294 42 0 chr11 142237783 142237926 -6545546 + HERVL LTR ERVL 2910 3058 -2596 262 24 71 0 chr11 142237930 142237972 -6545500 + T-rich Low_complexity Low_complexity 2 46 0 486 326 106 9 chr11 142237980 142238207 -6545265 + HERVL LTR ERVL 3136 3384 -2380 393 379 30 0 chr11 142238846 142239078 -6544394 + HERVL LTR ERVL 3784 4022 -1632 1249 324 77 31 chr11 142239383 142240134 -6543338 + HERVL LTR ERVL 4441 5226 -538 1513 302 99 48 chr11 142241072 142241430 -6542042 + L2 LINE L2 1486 1824 -1490 2268 119 0 0 chr11 142241430 142241732 -6541740 + AluSq SINE Alu 2 303 -10 1513 302 99 48 chr11 142241732 142242429 -6541043 + L2 LINE L2 1824 2595 -719 655 269 57 20 chr11 142242448 142242790 -6540682 + L2 LINE L2 2884 3311 -2 324 321 33 61 chr11 142242884 142243096 -6540376 - L1MEd LINE L1 -5319 800 595 1273 238 57 32 chr11 142243786 142244189 -6539283 - MLT1D LTR MaLR -17 488 76 205 248 141 60 chr11 142245895 142246044 -6537428 + L2 LINE L2 3081 3241 -31 469 289 64 40 chr11 142246104 142246353 -6537119 - MIR SINE MIR -6 256 2 246 346 73 22 chr11 142247080 142247216 -6536256 + MIR3 SINE MIR 3 145 -63 207 0 0 0 chr11 142247546 142247569 -6535903 + (CA)n Simple_repeat Simple_repeat 2 24 0 231 114 0 0 chr11 142248042 142248077 -6535395 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 1588 185 55 0 chr11 142249499 142249791 -6533681 - AluJo SINE Alu -4 308 1 209 33 33 0 chr11 142250596 142250626 -6532846 + (TG)n Simple_repeat Simple_repeat 2 32 0 180 268 110 49 chr11 142250662 142250744 -6532728 + L2 LINE L2 3162 3248 -24 504 105 0 0 chr11 142250812 142250888 -6532584 + (TC)n Simple_repeat Simple_repeat 1 76 0 1697 163 20 10 chr11 142250888 142251183 -6532289 - AluSq SINE Alu -15 298 1 305 300 114 7 chr11 142251914 142252054 -6531418 - L2 LINE L2 0 3313 3159 277 365 5 31 chr11 142254131 142254309 -6529163 - MIR SINE MIR -73 135 9 230 328 112 44 chr11 142255076 142255816 -6527656 + L2 LINE L2 2292 3099 -173 329 360 25 19 chr11 142256297 142256458 -6527014 - MIR SINE MIR -76 186 25 294 226 62 48 chr11 142258631 142258736 -6524736 - MIR SINE MIR -70 138 59 180 111 0 0 chr11 142259304 142259331 -6524141 + (GA)n Simple_repeat Simple_repeat 1 27 0 189 74 0 0 chr11 142262521 142262548 -6520924 + (TATG)n Simple_repeat Simple_repeat 2 28 0 294 291 9 9 chr11 142263742 142263852 -6519620 + (TAGA)n Simple_repeat Simple_repeat 1 110 0 253 213 40 0 chr11 142264517 142264592 -6518880 + A-rich Low_complexity Low_complexity 4 81 0 25 51 0 0 chr11 142266416 142266455 -6517017 + AT_rich Low_complexity Low_complexity 1 39 0 200 57 0 57 chr11 142266590 142266625 -6516847 + (TATATG)n Simple_repeat Simple_repeat 6 38 0 659 290 40 18 chr11 142267059 142267283 -6516189 - MIR SINE MIR -22 240 12 196 282 10 68 chr11 142267402 142267505 -6515967 + MIR3 SINE MIR 89 185 -23 2388 85 0 0 chr11 142268609 142268903 -6514569 - AluY SINE Alu -17 294 1 202 310 177 0 chr11 142269593 142269706 -6513766 - L2 LINE L2 -2 3270 3138 186 133 0 0 chr11 142269725 142269755 -6513717 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 374 289 67 33 chr11 142269847 142270027 -6513445 + MIR SINE MIR 11 196 -66 254 132 0 0 chr11 142270894 142270932 -6512540 + MADE1 DNA Mariner 2 39 -41 1949 137 28 0 chr11 142270932 142271216 -6512256 - AluSx SINE Alu -20 292 1 262 243 27 14 chr11 142273427 142273501 -6509971 + L2 LINE L2 3229 3303 -10 504 32 0 0 chr11 142273504 142273566 -6509906 + (TGGA)n Simple_repeat Simple_repeat 3 64 0 372 331 33 7 chr11 142274159 142274310 -6509162 - MER5A DNA MER1_type 0 189 35 382 311 102 6 chr11 142276593 142276770 -6506702 + MIR SINE MIR 54 247 -15 184 265 82 68 chr11 142276885 142277032 -6506440 - MIR3 SINE MIR -1 207 59 333 341 94 0 chr11 142277128 142277266 -6506206 - L2 LINE L2 0 3272 3122 414 308 8 0 chr11 142277298 142277418 -6506054 + L2 LINE L2 3190 3310 -3 1296 215 58 71 chr11 142278053 142278448 -6505024 + MLT1B LTR MaLR 1 390 0 247 309 25 0 chr11 142279015 142279096 -6504376 + MIR SINE MIR 70 152 -110 207 186 0 0 chr11 142281271 142281314 -6502158 + (CA)n Simple_repeat Simple_repeat 2 44 0 329 287 0 0 chr11 142284841 142284942 -6498530 - MER5A DNA MER1_type -80 109 9 254 262 0 36 chr11 142285493 142285577 -6497895 + GA-rich Low_complexity Low_complexity 3 83 0 2872 7 0 3 chr11 142285645 142285954 -6497518 - AluYa5 SINE Alu -3 308 1 2075 130 62 0 chr11 142287074 142287412 -6496060 + THE1B LTR MaLR 2 360 -4 371 293 43 24 chr11 142290049 142290213 -6493259 - MER5B DNA MER1_type -5 173 7 633 166 18 0 chr11 142290851 142291020 -6492452 + (CA)n Simple_repeat Simple_repeat 2 173 0 680 172 6 0 chr11 142291041 142291210 -6492262 + (CA)n Simple_repeat Simple_repeat 1 170 0 799 127 11 22 chr11 142291237 142291418 -6492054 + (CA)n Simple_repeat Simple_repeat 2 180 0 341 340 41 0 chr11 142291598 142291745 -6491727 + L2 LINE L2 3160 3312 -1 219 333 28 14 chr11 142291862 142292003 -6491469 - L2 LINE L2 -954 2360 2218 2160 106 0 20 chr11 142294318 142294621 -6488851 - AluY SINE Alu -14 297 1 261 214 0 0 chr11 142297216 142297272 -6486200 - L2 LINE L2 -2 3311 3256 181 321 0 0 chr11 142297290 142297343 -6486129 - L2 LINE L2 0 3313 3261 382 143 183 48 chr11 142297361 142297487 -6485985 - L2 LINE L2 0 3313 3171 * 1272 263 162 16 chr11 142297486 142297689 -6485783 + L2 LINE L2 2190 2362 -952 297 75 0 0 chr11 142297689 142297729 -6485743 + (CAA)n Simple_repeat Simple_repeat 2 41 0 1272 263 162 16 chr11 142297729 142298167 -6485305 + L2 LINE L2 2362 2925 -389 189 0 0 0 chr11 142298279 142298300 -6485172 + (A)n Simple_repeat Simple_repeat 1 21 0 504 275 0 0 chr11 142298446 142298577 -6484895 + L2 LINE L2 3183 3313 0 * 1252 304 94 15 chr11 142298566 142299389 -6484083 - L2 LINE L2 -133 3180 2254 2128 70 29 4 chr11 142299389 142299661 -6483811 - AluY SINE Alu -2 309 31 1252 304 94 15 chr11 142299661 142299903 -6483569 - L2 LINE L2 -1059 2254 2032 3499 74 0 0 chr11 142300090 142300565 -6482907 + L1PA8 LINE L1 5708 6182 0 2856 159 22 50 chr11 142300565 142301246 -6482226 + Tigger3b DNA MER2_type 38 696 -536 1939 125 215 73 chr11 142301572 142302051 -6481421 + Tigger3b DNA MER2_type 686 1232 0 309 130 13 39 chr11 142303605 142303682 -6479790 + GA-rich Low_complexity Low_complexity 2 76 0 329 277 109 0 chr11 142303695 142303832 -6479640 + MER103 DNA DNA 13 164 -2 2340 234 35 53 chr11 142304214 142304933 -6478539 + L1ME2 LINE L1 5448 6153 -11 212 0 36 0 chr11 142304933 142304961 -6478511 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 180 27 81 0 chr11 142305215 142305252 -6478220 + (TTA)n Simple_repeat Simple_repeat 3 42 0 44260 46 2 1 chr11 142305252 142311379 -6472093 - L1PA3 LINE L1 -18 6137 1 207 0 0 0 chr11 142311381 142311404 -6472068 + (T)n Simple_repeat Simple_repeat 1 23 0 22 0 0 0 chr11 142311408 142311430 -6472042 + AT_rich Low_complexity Low_complexity 1 22 0 449 207 0 0 chr11 142311540 142311627 -6471845 + MLT1C LTR MaLR 372 458 -9 217 315 14 0 chr11 142311833 142311906 -6471566 + GA-rich Low_complexity Low_complexity 3 76 0 2282 118 0 0 chr11 142312552 142312858 -6470614 + AluSc SINE Alu 1 306 -3 24 53 0 0 chr11 142313896 142313934 -6469538 + AT_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr11 142314473 142314502 -6468970 + AT_rich Low_complexity Low_complexity 1 29 0 2262 113 0 0 chr11 142315041 142315343 -6468129 + AluSx SINE Alu 1 302 -10 218 326 23 23 chr11 142315800 142315886 -6467586 + L2 LINE L2 3187 3272 0 348 344 77 60 chr11 142316095 142316988 -6466484 - L2 LINE L2 -219 3053 2146 207 0 0 0 chr11 142317031 142317054 -6466418 + (GA)n Simple_repeat Simple_repeat 2 24 0 226 245 0 0 chr11 142317173 142317226 -6466246 + MLT1G LTR MaLR 32 84 -506 1074 187 134 65 chr11 142317292 142317613 -6465859 + MLT1G LTR MaLR 248 590 0 26 0 0 0 chr11 142317952 142317978 -6465494 + AT_rich Low_complexity Low_complexity 1 26 0 253 254 90 40 chr11 142317993 142318194 -6465278 - L1MC5 LINE L1 -107 7854 7644 1063 257 46 3 chr11 142318538 142318841 -6464631 + L1ME LINE L1 4037 4352 -1794 1510 264 52 56 chr11 142318867 142319419 -6464053 - MER68 LTR ERV1 -2 560 11 3520 156 51 25 chr11 142319419 142320024 -6463448 + L1MA6 LINE L1 5617 6242 -58 809 110 8 0 chr11 142320024 142320151 -6463321 + (TA)n Simple_repeat Simple_repeat 1 128 0 3520 156 51 25 chr11 142320151 142320212 -6463260 + L1MA6 LINE L1 6242 6300 0 1462 239 79 48 chr11 142320257 142321058 -6462414 + L1ME LINE L1 4626 5488 -674 2683 251 42 87 chr11 142321058 142321898 -6461574 + L1M4 LINE L1 2650 3403 -2743 2127 113 3 3 chr11 142321898 142322217 -6461255 - AluSq SINE Alu 0 319 1 2683 251 42 87 chr11 142322217 142322782 -6460690 + L1M4 LINE L1 3403 3992 -2154 1635 55 5 0 chr11 142323102 142323304 -6460168 - MLT2A1 LTR ERVL -241 203 1 44288 76 10 1 chr11 142323304 142328907 -6454565 - HERVL-A1-A1 LTR ERVL 0 5654 1 3325 100 11 2 chr11 142328907 142329347 -6454125 - MLT2A1 LTR ERVL 0 444 1 3489 131 21 7 chr11 142329352 142329909 -6453563 - L1M1 LINE L1 -4217 3348 2784 6705 179 17 3 chr11 142329931 142331046 -6452426 - L1M1 LINE L1 -6425 1140 10 4036 263 45 25 chr11 142331156 142333128 -6450344 + L1M4c LINE L1 2025 4052 -2330 320 172 149 0 chr11 142333254 142333341 -6450131 + L1M4c LINE L1 4061 4160 -2222 16641 95 25 5 chr11 142333369 142336505 -6446967 - L1PA7 LINE L1 -7 6147 2965 1567 185 30 3 chr11 142336505 142336803 -6446669 + L1MB3 LINE L1 5877 6182 -1 529 342 72 0 chr11 142336810 142337047 -6446425 - L2 LINE L2 -2033 1281 1028 431 215 41 126 chr11 142337638 142338177 -6445295 + L1ME LINE L1 2787 3279 -2867 2242 202 49 9 chr11 142338183 142338694 -6444778 - MER44D DNA MER2_type 0 605 2 33 73 0 0 chr11 142339341 142339409 -6444063 + AT_rich Low_complexity Low_complexity 1 68 0 237 94 57 38 chr11 142339414 142339467 -6444005 + L1MC4 LINE L1 6652 6705 -1337 442 316 100 32 chr11 142339483 142340011 -6443461 + L1ME LINE L1 3425 3988 -2158 2228 290 147 17 chr11 142340041 142340978 -6442494 + L2 LINE L2 1531 2589 -725 419 258 118 32 chr11 142340981 142341167 -6442305 + L2 LINE L2 2949 3150 -163 327 253 96 18 chr11 142341168 142341283 -6442189 + MER39 LTR ERV1 1 160 -425 1144 181 149 14 chr11 142341362 142341638 -6441834 + MER39 LTR ERV1 395 707 0 244 277 9 54 chr11 142341644 142341756 -6441716 + L2 LINE L2 3152 3258 -55 237 301 58 0 chr11 142341782 142341885 -6441587 + L1ME LINE L1 4735 4843 -1303 1956 168 0 0 chr11 142341977 142342281 -6441191 + AluJo SINE Alu 3 306 -6 274 296 156 5 chr11 142342452 142342651 -6440821 + L1ME LINE L1 5565 5793 -369 25 65 0 0 chr11 142342668 142342714 -6440758 + AT_rich Low_complexity Low_complexity 1 46 0 573 273 65 93 chr11 142342868 142343311 -6440161 - MLT1H LTR MaLR 0 549 119 426 329 75 13 chr11 142343927 142344155 -6439317 - L3b LINE CR1 -83 1500 1259 331 267 101 36 chr11 142344415 142344648 -6438824 + MIR SINE MIR 3 248 -14 25 65 0 0 chr11 142344795 142344841 -6438631 + AT_rich Low_complexity Low_complexity 1 46 0 261 330 103 10 chr11 142344888 142344985 -6438487 - L2 LINE L2 -25 3247 3142 605 333 151 12 chr11 142345405 142345822 -6437650 - L2 LINE L2 -2583 731 257 419 276 157 44 chr11 142347973 142348267 -6435205 - LTR16A LTR ERVL -44 406 80 2502 183 8 46 chr11 142349013 142349538 -6433934 + MLT1D LTR MaLR 1 505 0 403 273 0 0 chr11 142352834 142352933 -6430539 - MIR SINE MIR -11 251 153 186 344 188 0 chr11 142352976 142353072 -6430400 + L2 LINE L2 3142 3255 -17 2060 121 0 23 chr11 142353120 142353427 -6430045 - AluSg SINE Alu -10 300 1 313 324 57 0 chr11 142353454 142353559 -6429913 + L2 LINE L2 3162 3272 0 208 236 0 36 chr11 142354336 142354391 -6429081 + MIR SINE MIR 93 145 -63 614 259 18 6 chr11 142354574 142354740 -6428732 - LTR33 LTR ERVL -1 520 353 774 335 43 3 chr11 142354858 142355186 -6428286 - LTR33 LTR ERVL -176 345 5 1630 171 4 11 chr11 142355407 142355682 -6427790 - AluJo SINE Alu 0 312 40 24 0 0 0 chr11 142357154 142357178 -6426294 + GC_rich Low_complexity Low_complexity 1 24 0 598 231 47 18 chr11 142358662 142358831 -6424641 - MER104 DNA MER2_type -3 177 4 288 267 167 13 chr11 142358865 142359022 -6424450 + MIR SINE MIR 21 196 -61 252 302 148 41 chr11 142359044 142359335 -6424137 - L2 LINE L2 -609 2705 2384 506 363 51 40 chr11 142359696 142360049 -6423423 + L2 LINE L2 2916 3272 0 347 298 66 33 chr11 142362415 142362596 -6420876 - MIR3 SINE MIR -7 201 15 237 159 0 0 chr11 142363657 142363701 -6419771 + (CA)n Simple_repeat Simple_repeat 2 45 0 183 256 0 0 chr11 142372775 142372818 -6410654 + L2 LINE L2 3228 3270 -2 244 203 16 16 chr11 142373131 142373195 -6410277 - MIR SINE MIR -109 153 90 210 231 19 0 chr11 142373752 142373804 -6409668 + C-rich Low_complexity Low_complexity 5 57 0 208 250 105 16 chr11 142376152 142376276 -6407196 - L3b LINE CR1 -195 1388 1254 368 163 25 0 chr11 142376521 142376601 -6406871 + GA-rich Low_complexity Low_complexity 3 84 0 43353 37 24 3 chr11 142378205 142384233 -6399239 - L1PA4 LINE L1 0 6155 1 8130 64 9 6 chr11 142384222 142385257 -6398215 - L1P LINE L1 -5104 1042 5 * 243 362 16 22 chr11 142386009 142386194 -6397278 - MIR SINE MIR -31 231 48 236 236 11 0 chr11 142389495 142389584 -6393888 + CT-rich Low_complexity Low_complexity 1 90 0 213 189 0 0 chr11 142392943 142392980 -6390492 + MIR SINE MIR 108 144 -118 23 0 0 0 chr11 142393026 142393049 -6390423 + AT_rich Low_complexity Low_complexity 1 23 0 2057 118 0 0 chr11 142394319 142394599 -6388873 - AluSq SINE Alu -12 301 22 289 174 93 70 chr11 142397732 142397818 -6385654 + MER94 DNA DNA 25 112 -22 233 269 0 0 chr11 142397892 142397944 -6385528 + (CA)n Simple_repeat Simple_repeat 2 53 0 219 114 0 0 chr11 142398249 142398284 -6385188 + (CAA)n Simple_repeat Simple_repeat 2 36 0 289 265 48 0 chr11 142400561 142400644 -6382828 + MIR SINE MIR 94 180 -82 1588 196 73 44 chr11 142400914 142401368 -6382104 + MLT1C LTR MaLR 1 467 0 266 368 98 0 chr11 142401538 142401671 -6381801 + MER5A DNA MER1_type 44 189 0 220 284 198 17 chr11 142401671 142401787 -6381685 - MIR3 SINE MIR -48 160 24 205 167 185 93 chr11 142402746 142402854 -6380618 - L3 LINE CR1 -1 1576 1459 2598 98 14 8 chr11 142403144 142403511 -6379961 + THE1C LTR MaLR 7 375 0 437 243 110 0 chr11 142404124 142404269 -6379203 + MIR SINE MIR 102 261 -1 206 105 26 0 chr11 142404616 142404654 -6378818 + (TA)n Simple_repeat Simple_repeat 1 39 0 2296 88 0 3 chr11 142405227 142405536 -6377936 - AluY SINE Alu 0 308 1 27 0 0 0 chr11 142406207 142406234 -6377238 + AT_rich Low_complexity Low_complexity 1 27 0 2391 132 3 0 chr11 142407723 142408080 -6375392 - MER46B DNA MER2_type 0 236 4 988 79 13 0 chr11 142408854 142409006 -6374466 + (TGGA)n Simple_repeat Simple_repeat 1 154 0 430 228 203 0 chr11 142410058 142410181 -6373291 + MER5A DNA MER1_type 26 173 -16 240 255 65 42 chr11 142411781 142411954 -6371518 - MLT1G LTR MaLR 0 556 386 295 299 41 32 chr11 142412041 142412237 -6371235 - MLT1G LTR MaLR -392 198 1 662 254 54 27 chr11 142412633 142412818 -6370654 + MIR SINE MIR 68 257 -5 399 21 0 0 chr11 142412935 142412983 -6370489 + (TG)n Simple_repeat Simple_repeat 1 48 0 270 164 0 0 chr11 142413587 142413642 -6369830 + (CA)n Simple_repeat Simple_repeat 2 56 0 1060 211 68 18 chr11 142415209 142415488 -6367984 - MER58B DNA MER1_type 0 341 49 1851 129 0 15 chr11 142415564 142415828 -6367644 - AluSx SINE Alu -49 263 4 458 269 62 0 chr11 142416310 142416440 -6367032 - MIR SINE MIR -108 154 17 1362 152 80 27 chr11 142417956 142418219 -6365253 - AluJo SINE Alu -30 282 6 364 329 26 7 chr11 142418224 142418376 -6365096 - MIR SINE MIR -19 243 89 452 281 49 49 chr11 142418519 142418683 -6364789 + MIR SINE MIR 48 211 -51 231 349 62 36 chr11 142419260 142419452 -6364020 + MIR SINE MIR 21 217 -45 567 301 38 30 chr11 142419569 142419805 -6363667 + MIR SINE MIR 1 238 -24 994 301 168 42 chr11 142421459 142422354 -6361118 + L2 LINE L2 1694 2700 -614 1170 42 24 0 chr11 142422359 142422525 -6360947 + L1P LINE L1 5254 5423 -731 1829 114 13 36 chr11 142423184 142423490 -6359982 + AluY SINE Alu 1 299 -12 2695 95 8 13 chr11 142424614 142425002 -6358470 + L1PA11 LINE L1 5789 6174 0 566 322 56 38 chr11 142425007 142425376 -6358096 - L2 LINE L2 -176 3137 2765 22 0 0 0 chr11 142425453 142425475 -6357997 + AT_rich Low_complexity Low_complexity 1 22 0 564 302 22 6 chr11 142427151 142427333 -6356139 + MIR SINE MIR 15 199 -63 181 265 20 20 chr11 142427864 142427913 -6355559 - MER5A DNA MER1_type -84 105 57 4492 54 40 0 chr11 142428138 142428713 -6354759 - L1PA8 LINE L1 -5 6167 5570 1592 102 0 4 chr11 142428713 142428959 -6354513 + L1P LINE L1 4901 5145 -1001 287 267 94 52 chr11 142430443 142430634 -6352838 - MIR SINE MIR -1 261 63 412 296 65 25 chr11 142431228 142431427 -6352045 + L1M4 LINE L1 4023 4229 -1917 1079 228 71 80 chr11 142431929 142432465 -6351007 - MLT1F LTR MaLR -1 541 11 436 191 9 38 chr11 142432887 142432992 -6350480 + L1MB3 LINE L1 6081 6182 -1 367 327 104 43 chr11 142433319 142433741 -6349731 + HAL1b LINE L1 67 514 -834 257 329 12 12 chr11 142433807 142433892 -6349580 + L2 LINE L2 3187 3271 -1 22 35 0 0 chr11 142434671 142434700 -6348772 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr11 142435255 142435281 -6348191 + AT_rich Low_complexity Low_complexity 1 26 0 324 343 71 34 chr11 142435429 142435726 -6347746 + L1M4 LINE L1 3821 4128 -2018 3469 238 103 26 chr11 142435742 142436081 -6347391 + L1ME1 LINE L1 3580 3891 -2273 2607 71 20 6 chr11 142436081 142436431 -6347041 + THE1A LTR MaLR 1 355 0 11244 107 7 3 chr11 142436431 142438004 -6345468 + THE1A-int LTR MaLR 1 1579 -1 2399 90 32 9 chr11 142438005 142438350 -6345122 + THE1A LTR MaLR 1 353 -2 3469 238 103 26 chr11 142438350 142440173 -6343299 + L1ME1 LINE L1 3890 5916 -248 270 220 37 18 chr11 142440223 142440332 -6343140 + (TA)n Simple_repeat Simple_repeat 1 111 0 511 287 32 21 chr11 142440332 142440520 -6342952 + L1ME1 LINE L1 5919 6108 -58 373 328 44 97 chr11 142441208 142441550 -6341922 + L2 LINE L2 2948 3271 -1 283 260 0 13 chr11 142444745 142444822 -6338650 - MLT1K LTR MaLR -4 584 509 269 328 75 95 chr11 142445568 142445645 -6337827 + L2 LINE L2 2725 2802 -470 2362 94 9 0 chr11 142445645 142445976 -6337496 - L1PA8 LINE L1 -15 6157 5824 269 328 75 95 chr11 142445976 142446392 -6337080 + L2 LINE L2 2802 3203 -69 231 305 68 34 chr11 142447841 142447959 -6335513 + MIR SINE MIR 21 142 -66 329 231 68 0 chr11 142448119 142448236 -6335236 - L1MD2 LINE L1 -1 6358 6234 267 31 0 0 chr11 142448244 142448276 -6335196 + (TG)n Simple_repeat Simple_repeat 1 32 0 3427 80 23 20 chr11 142448314 142449006 -6334466 - L1PA8 LINE L1 -385 5787 5096 2382 74 109 0 chr11 142449006 142449345 -6334127 + L1PA8 LINE L1 5788 6163 -9 28 0 0 0 chr11 142449345 142449373 -6334099 + AT_rich Low_complexity Low_complexity 1 28 0 1533 233 98 7 chr11 142449398 142449849 -6333623 - L1MD2 LINE L1 -175 6184 5693 259 343 29 0 chr11 142449927 142450032 -6333440 + MIR SINE MIR 136 243 -19 259 384 74 11 chr11 142450163 142450353 -6333119 - MIR SINE MIR -54 208 7 1587 144 114 0 chr11 142450514 142450777 -6332695 - AluSq SINE Alu -20 293 1 1036 40 0 0 chr11 142453269 142453394 -6330078 - L1PA7 LINE L1 0 6154 6030 333 24 0 0 chr11 142453394 142453436 -6330036 + U6 snRNA snRNA 27 68 -39 2513 253 51 18 chr11 142454312 142455236 -6328236 - L1ME2 LINE L1 -8 6156 5205 1823 216 27 2 chr11 142455292 142455694 -6327778 + MLT1C LTR MaLR 27 438 -29 185 353 85 55 chr11 142457141 142457376 -6326096 + L2 LINE L2 2830 3071 -201 605 288 66 33 chr11 142457468 142457711 -6325761 + MIR SINE MIR 6 256 -6 186 103 0 0 chr11 142457716 142457745 -6325727 + (ATG)n Simple_repeat Simple_repeat 3 31 0 4986 196 16 12 chr11 142458140 142458833 -6324639 - L1 LINE L1 -2629 4936 4247 1831 165 10 0 chr11 142458833 142459124 -6324348 - AluSx SINE Alu -16 296 3 4986 196 16 12 chr11 142459124 142460009 -6323463 - L1 LINE L1 -3318 4247 3353 3558 72 0 0 chr11 142460013 142460457 -6323015 - MLT2A1 LTR ERVL 0 444 1 14054 69 24 1 chr11 142460457 142462355 -6321117 - HERVL-A1 LTR ERVL 0 5654 3713 231 359 62 34 chr11 142462972 142463181 -6320291 + MIR SINE MIR 40 254 -8 455 329 163 42 chr11 142463247 142463930 -6319542 + L2 LINE L2 2154 2918 -396 321 282 54 54 chr11 142464116 142464265 -6319207 + L2 LINE L2 3164 3312 -1 249 57 0 0 chr11 142464420 142464455 -6319017 + (TG)n Simple_repeat Simple_repeat 1 35 0 192 40 0 0 chr11 142464454 142464479 -6318993 + (GA)n Simple_repeat Simple_repeat 1 25 0 * 1334 231 6 43 chr11 142465635 142465985 -6317487 - MER58B DNA MER1_type -3 338 2 1552 322 88 68 chr11 142466041 142468374 -6315098 + L2 LINE L2 200 2579 -735 31 68 0 0 chr11 142468416 142468475 -6314997 + AT_rich Low_complexity Low_complexity 1 59 0 338 184 10 107 chr11 142469277 142469380 -6314092 - MER97c DNA MER1_type? -926 164 72 201 116 23 23 chr11 142469633 142469676 -6313796 + A-rich Low_complexity Low_complexity 4 46 0 637 268 140 45 chr11 142470208 142470670 -6312802 + L1MDb LINE L1 787 1299 -5110 2498 83 0 3 chr11 142470670 142470982 -6312490 + AluSq SINE Alu 3 313 0 637 268 140 45 chr11 142470982 142471005 -6312467 + L1MDb LINE L1 1299 1318 -5091 426 174 22 22 chr11 142474894 142474986 -6308486 + MLT1B LTR MaLR 1 92 -298 942 198 38 0 chr11 142475059 142475271 -6308201 + MLT1B LTR MaLR 53 272 -118 3953 72 2 4 chr11 142475377 142475890 -6307582 + L1PA7 LINE L1 5640 6151 -3 381 308 100 47 chr11 142476066 142476475 -6306997 + L2 LINE L2 2881 3311 -2 364 319 102 59 chr11 142477206 142477886 -6305586 + L2 LINE L2 213 921 -2393 393 271 0 38 chr11 142477905 142478038 -6305434 - L2 LINE L2 0 3313 3186 538 327 95 22 chr11 142478072 142478473 -6304999 + L2 LINE L2 2884 3313 0 337 330 110 20 chr11 142479703 142479903 -6303569 + MIR SINE MIR 18 235 -27 568 205 180 19 chr11 142479914 142480075 -6303397 - MER5A DNA MER1_type 0 189 3 209 336 51 22 chr11 142480234 142480371 -6303101 + MIR SINE MIR 122 262 0 251 319 50 0 chr11 142481809 142481928 -6301544 - MIR SINE MIR -6 256 132 224 163 20 0 chr11 142482057 142482106 -6301366 + (TTATA)n Simple_repeat Simple_repeat 3 52 0 494 57 14 0 chr11 142484139 142484181 -6299291 + (CA)n Simple_repeat Simple_repeat 1 113 0 494 57 14 0 chr11 142484181 142484251 -6299221 + (CA)n Simple_repeat Simple_repeat 2 72 0 243 366 45 0 chr11 142484868 142484980 -6298492 - L2 LINE L2 -1 3271 3155 951 283 74 6 chr11 142487746 142488096 -6295376 + LTR16A LTR ERVL 35 408 -42 461 311 144 4 chr11 142488200 142488464 -6295008 + L2 LINE L2 3008 3308 -5 234 275 22 22 chr11 142489589 142489680 -6293792 + L2 LINE L2 2668 2758 -556 1378 195 27 11 chr11 142489877 142490138 -6293334 - AluJb SINE Alu -14 298 34 183 80 0 0 chr11 142491872 142491897 -6291575 + (CA)n Simple_repeat Simple_repeat 1 25 0 411 351 38 78 chr11 142493231 142493576 -6289896 - L2 LINE L2 0 3272 2942 3503 122 11 35 chr11 142493647 142494186 -6289286 - MER1A DNA MER1_type -1 526 1 215 299 80 58 chr11 142494207 142494344 -6289128 - L2 LINE L2 -6 3266 3127 575 293 16 5 chr11 142494664 142494852 -6288620 + MIR SINE MIR 61 250 -12 24 0 0 0 chr11 142495068 142495092 -6288380 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr11 142495827 142495856 -6287616 + AT_rich Low_complexity Low_complexity 1 29 0 433 346 0 0 chr11 142497161 142497268 -6286204 + MER81 DNA DNA 8 114 0 332 244 12 0 chr11 142497268 142497354 -6286118 - MIR SINE MIR -109 153 67 2218 82 3 41 chr11 142497357 142497674 -6285798 - AluY SINE Alu 0 311 7 197 324 96 29 chr11 142498964 142499100 -6284372 - MIR SINE MIR -32 230 86 212 324 0 15 chr11 142502621 142502689 -6280783 + MIR SINE MIR 15 81 -181 346 217 60 0 chr11 142502705 142502788 -6280684 - L1MB4 LINE L1 -2 6178 6091 1281 215 33 15 chr11 142502792 142503066 -6280406 + AluJo SINE Alu 4 282 -30 5282 42 5 5 chr11 142503153 142503790 -6279682 + L1PA5 LINE L1 5517 6153 -1 322 298 225 7 chr11 142503996 142504298 -6279174 + L2 LINE L2 1908 2275 -1039 14512 225 35 22 chr11 142504339 142506168 -6277304 - L1PA16 LINE L1 -1 6816 5012 2219 137 0 0 chr11 142506168 142506475 -6276997 + AluSx SINE Alu 1 307 -5 14512 225 35 22 chr11 142506475 142507119 -6276353 - L1PA16 LINE L1 -1805 5012 4378 207 0 0 0 chr11 142507119 142507142 -6276330 + (TTG)n Simple_repeat Simple_repeat 2 24 0 14512 225 35 22 chr11 142507142 142510080 -6273392 - L1PA16 LINE L1 -2439 4378 1330 437 324 68 59 chr11 142510275 142510555 -6272917 + L2 LINE L2 2633 2909 -404 2153 123 0 3 chr11 142510555 142510855 -6272617 - AluSg SINE Alu -11 299 1 437 324 68 59 chr11 142510855 142511238 -6272234 + L2 LINE L2 2909 3312 -1 206 255 33 111 chr11 142511323 142511476 -6271996 + L2 LINE L2 3161 3301 -12 309 26 0 0 chr11 142511633 142511671 -6271801 + (TG)n Simple_repeat Simple_repeat 2 39 0 34012 46 4 1 chr11 142512796 142518522 -6264950 + L1PA4 LINE L1 131 5870 -285 201 279 66 59 chr11 142518668 142518804 -6264668 + L2 LINE L2 2622 2758 -556 1009 226 96 66 chr11 142520481 142520927 -6262545 - LTR41 LTR ERVL -12 761 201 2725 81 6 0 chr11 142570986 142571344 -6212128 - THE1B-int LTR MaLR -1205 375 16 2176 127 49 26 chr11 142571344 142571691 -6211781 - THE1B LTR MaLR -9 355 1 639 288 79 18 chr11 142572252 142572481 -6210991 - MIR SINE MIR -8 254 12 666 243 19 10 chr11 142572745 142572907 -6210565 - MER5B DNA MER1_type 0 178 24 455 254 79 26 chr11 142573701 142573890 -6209582 + L2 LINE L2 3114 3312 -1 225 309 139 30 chr11 142573926 142574091 -6209381 - MIR SINE MIR -60 202 20 262 253 0 36 chr11 142574141 142574224 -6209248 + GA-rich Low_complexity Low_complexity 4 83 0 216 0 0 0 chr11 142575194 142575218 -6208254 + (T)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr11 142576411 142576432 -6207040 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr11 142576914 142576942 -6206530 + AT_rich Low_complexity Low_complexity 1 28 0 3234 221 96 16 chr11 142580116 142580252 -6203220 - Charlie2a DNA MER1_type -41 2821 2697 243 0 0 0 chr11 142580252 142580279 -6203193 + (TG)n Simple_repeat Simple_repeat 2 28 0 3234 221 96 16 chr11 142580279 142581171 -6202301 - Charlie2a DNA MER1_type -165 2697 1710 494 219 0 39 chr11 142582325 142582453 -6201019 - MIR SINE MIR -32 230 108 532 208 234 13 chr11 142582674 142582828 -6200644 - MER5A DNA MER1_type 0 189 2 428 240 54 8 chr11 142582983 142583112 -6200360 - L2 LINE L2 -4 3309 3175 2261 58 0 0 chr11 142584369 142584643 -6198829 - AluY SINE Alu -3 308 35 180 111 0 0 chr11 142585632 142585659 -6197813 + (TG)n Simple_repeat Simple_repeat 1 27 0 382 336 26 17 chr11 142586484 142586600 -6196872 - L2 LINE L2 -1 3271 3155 2163 134 36 28 chr11 142586691 142587080 -6196392 - MSTB LTR MaLR -34 392 1 234 283 76 11 chr11 142587415 142587507 -6195965 - L2 LINE L2 -601 2713 2616 202 277 0 0 chr11 142587777 142587824 -6195648 - L2 LINE L2 0 3313 3267 210 203 119 0 chr11 142587866 142587925 -6195547 - MER5A DNA MER1_type -86 103 38 486 362 179 3 chr11 142588013 142588649 -6194823 - L2 LINE L2 -1636 1678 931 333 323 26 73 chr11 142588920 142589112 -6194360 + MIR SINE MIR 63 245 -17 25 0 0 0 chr11 142590735 142590760 -6192712 + AT_rich Low_complexity Low_complexity 1 25 0 185 333 42 42 chr11 142591180 142591345 -6192127 + MIR SINE MIR 97 261 -1 275 297 0 0 chr11 142592349 142592413 -6191059 + A-rich Low_complexity Low_complexity 1 64 0 201 121 0 0 chr11 142593836 142593869 -6189603 + (ATG)n Simple_repeat Simple_repeat 1 33 0 415 323 81 14 chr11 142595294 142595517 -6187955 - L3 LINE CR1 -160 1417 1180 294 29 0 0 chr11 142595690 142595697 -6187775 + (TG)n Simple_repeat Simple_repeat 1 42 0 294 29 0 0 chr11 142595697 142595732 -6187740 + (TG)n Simple_repeat Simple_repeat 2 36 0 4882 223 31 19 chr11 142595948 142597318 -6186154 + L1MB8 LINE L1 4103 5486 -692 219 204 0 0 chr11 142597318 142597372 -6186100 + A-rich Low_complexity Low_complexity 1 54 0 5864 211 32 15 chr11 142597380 142599598 -6183874 + L1MC1 LINE L1 4074 6327 -6 3235 199 20 21 chr11 142599622 142600330 -6183142 + L1MB8 LINE L1 5472 6178 0 1988 222 80 82 chr11 142601700 142602224 -6181248 + LTR1B LTR ERV1 1 524 -302 2465 48 3 3 chr11 142602224 142602517 -6180955 + AluY SINE Alu 1 293 -18 1988 222 80 82 chr11 142602517 142602820 -6180652 + LTR1B LTR ERV1 524 826 0 1345 176 157 4 chr11 142603682 142603943 -6179529 + AluJo SINE Alu 1 301 -11 306 383 0 8 chr11 142604000 142604128 -6179344 + MIR SINE MIR 20 146 -62 350 267 95 0 chr11 142604365 142604470 -6179002 + MIR3 SINE MIR 88 202 -6 367 258 168 15 chr11 142604789 142604974 -6178498 - MIR SINE MIR -30 232 25 24 0 0 0 chr11 142605149 142605173 -6178299 + AT_rich Low_complexity Low_complexity 1 24 0 396 272 18 83 chr11 142605180 142605349 -6178123 - L2 LINE L2 0 3313 3156 1438 97 0 15 chr11 142607992 142608187 -6175285 - AluSg/x SINE Alu -7 302 111 673 244 72 5 chr11 142609021 142609214 -6174258 + MER3 DNA MER1_type 3 208 -1 411 339 131 25 chr11 142610286 142610852 -6172620 - L2 LINE L2 -822 2492 1867 186 327 109 15 chr11 142611457 142611659 -6171813 - L2 LINE L2 -1936 1378 1158 621 326 25 0 chr11 142611937 142612133 -6171339 + MIR SINE MIR 54 254 -8 1796 268 50 13 chr11 142612183 142612706 -6170766 + MLT1F LTR MaLR 1 542 0 558 321 82 0 chr11 142612876 142613144 -6170328 + MLT1F-int LTR MaLR 308 597 -774 2339 83 10 0 chr11 142613477 142613766 -6169706 - AluY SINE Alu -19 292 1 324 301 5 106 chr11 142613954 142614153 -6169319 + MLT1F-int LTR MaLR 961 1139 -232 347 301 91 14 chr11 142614287 142614430 -6169042 + MLT1F-int LTR MaLR 1218 1371 0 1750 264 85 18 chr11 142614430 142614938 -6168534 + MLT1F LTR MaLR 1 542 0 780 234 141 103 chr11 142616882 142617415 -6166057 + MER34B LTR ERV1 8 560 -5 214 301 13 124 chr11 142618238 142618391 -6165081 + L2 LINE L2 3134 3269 -3 276 358 55 0 chr11 142618831 142618940 -6164532 - L2 LINE L2 -1 3312 3198 218 264 88 11 chr11 142619464 142619555 -6163917 + MIR SINE MIR 126 223 -39 2340 95 0 13 chr11 142619728 142620043 -6163429 + AluSp SINE Alu 1 311 -2 1181 241 64 118 chr11 142620215 142620623 -6162849 + MLT1A2 LTR MaLR 8 390 0 25 31 0 0 chr11 142620656 142620688 -6162784 + AT_rich Low_complexity Low_complexity 1 32 0 239 61 0 0 chr11 142620688 142620721 -6162751 + L1PA2 LINE L1 6115 6147 -8 312 183 70 9 chr11 142620721 142620836 -6162636 + (TA)n Simple_repeat Simple_repeat 1 122 0 182 212 0 0 chr11 142622181 142622214 -6161258 + MIR SINE MIR 87 119 -143 339 85 0 0 chr11 142623547 142623594 -6159878 + (GAAA)n Simple_repeat Simple_repeat 2 48 0 194 0 39 0 chr11 142624275 142624301 -6159171 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 187 250 125 14 chr11 142624456 142624528 -6158944 - MIR SINE MIR -95 113 34 548 254 71 50 chr11 142624825 142625031 -6158441 + MIR SINE MIR 3 210 -52 483 98 12 85 chr11 142625823 142625905 -6157567 - FLAM_A SINE Alu -24 118 43 365 349 38 0 chr11 142626307 142626439 -6157033 - L2 LINE L2 -2 3270 3134 1698 274 78 67 chr11 142626481 142626939 -6156533 - L2 LINE L2 -341 2973 2522 1526 210 50 36 chr11 142626939 142627296 -6156176 + MLT1A1 LTR MaLR 4 365 0 1698 274 78 67 chr11 142627296 142627810 -6155662 - L2 LINE L2 -792 2522 1990 284 24 0 48 chr11 142627835 142627877 -6155595 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 1368 106 17 0 chr11 142627884 142628064 -6155408 - AluSq SINE Alu -30 283 101 486 136 0 0 chr11 142628064 142628130 -6155342 + AluS SINE Alu 31 96 -217 242 303 40 0 chr11 142628197 142628273 -6155199 + MLT1A2 LTR MaLR 1 79 -295 343 292 212 17 chr11 142628296 142628584 -6154888 - L2 LINE L2 -1635 1679 1336 345 121 17 0 chr11 142628776 142628834 -6154638 - Alu SINE Alu -7 295 237 643 234 80 21 chr11 142629547 142629735 -6153737 - MIR SINE MIR -50 212 14 217 254 0 0 chr11 142630234 142630289 -6153183 + A-rich Low_complexity Low_complexity 1 55 0 363 289 82 7 chr11 142630845 142630980 -6152492 + L2 LINE L2 2511 2655 -659 23 33 0 0 chr11 142631256 142631286 -6152186 + AT_rich Low_complexity Low_complexity 1 30 0 189 102 82 0 chr11 142631543 142631592 -6151880 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 2144 132 59 34 chr11 142632205 142632560 -6150912 + THE1B LTR MaLR 1 364 0 434 147 40 0 chr11 142633064 142633139 -6150333 - MER116 DNA Mariner -2 78 1 309 298 36 47 chr11 142633207 142633486 -6149986 - L1MC5 LINE L1 -169 7792 7517 31959 111 8 59 chr11 142634762 142641249 -6142223 - L1PA7 LINE L1 0 6154 12 425 260 44 84 chr11 142641249 142641476 -6141996 - MIR SINE MIR -36 226 9 475 333 89 0 chr11 142642402 142642615 -6140857 + MIR SINE MIR 12 243 -19 2567 242 65 19 chr11 142643745 142644496 -6138976 + L1MC4 LINE L1 6730 7515 -527 866 168 46 20 chr11 142644497 142644693 -6138779 - MLT1A1 LTR MaLR -164 201 1 726 221 91 82 chr11 142644730 142645010 -6138462 + L1MC4 LINE L1 7623 7910 -132 183 80 0 0 chr11 142645010 142645035 -6138437 + (TCTA)n Simple_repeat Simple_repeat 2 26 0 726 221 91 82 chr11 142645035 142645170 -6138302 + L1MC4 LINE L1 7910 8042 0 310 277 54 9 chr11 142645305 142645417 -6138055 - MIR SINE MIR -104 158 42 920 84 0 15 chr11 142647207 142647338 -6136134 - AluY SINE Alu -1 310 182 487 244 17 25 chr11 142648134 142648253 -6135219 - L2 LINE L2 -10 3303 3186 201 269 0 0 chr11 142648344 142648422 -6135050 + GA-rich Low_complexity Low_complexity 3 80 0 1887 142 10 3 chr11 142653916 142654212 -6129260 - AluSx SINE Alu -14 298 1 245 178 155 93 chr11 142654299 142654354 -6129118 - MIR SINE MIR -83 179 129 2585 163 29 7 chr11 142654354 142654771 -6128701 + MSTB LTR MaLR 1 426 0 245 178 155 93 chr11 142654771 142654844 -6128628 - MIR SINE MIR -133 129 43 207 311 68 39 chr11 142655054 142655157 -6128315 + L2 LINE L2 3183 3288 -25 217 183 17 33 chr11 142655679 142655739 -6127733 + GA-rich Low_complexity Low_complexity 4 62 0 214 322 0 0 chr11 142656715 142656774 -6126698 - MIR SINE MIR -120 142 84 204 40 0 0 chr11 142656940 142656965 -6126507 + (T)n Simple_repeat Simple_repeat 1 25 0 1756 117 4 0 chr11 142657086 142657333 -6126139 - AluSq SINE Alu -65 248 1 27 29 0 0 chr11 142658831 142658865 -6124607 + AT_rich Low_complexity Low_complexity 1 34 0 1125 255 106 67 chr11 142659183 142659639 -6123833 + MLT2B1 LTR ERVL 4 482 -38 297 109 0 0 chr11 142659639 142659685 -6123787 + (CA)n Simple_repeat Simple_repeat 2 47 0 1125 255 106 67 chr11 142659685 142659718 -6123754 + MLT2B1 LTR ERVL 482 512 -8 272 305 78 60 chr11 142660629 142660796 -6122676 + MIR3 SINE MIR 14 183 -25 2309 21 0 32 chr11 142660990 142661273 -6122199 + AluYb8 SINE Alu 39 312 -6 198 167 0 0 chr11 142661373 142661409 -6122063 + A-rich Low_complexity Low_complexity 1 36 0 203 332 77 47 chr11 142661607 142661842 -6121630 + L2 LINE L2 2565 2806 -508 243 0 0 0 chr11 142662215 142662242 -6121230 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr11 142662330 142662351 -6121121 + AT_rich Low_complexity Low_complexity 1 21 0 533 236 78 16 chr11 142664355 142664546 -6118926 + MER69 DNA AcHobo 5 207 -2319 294 327 9 0 chr11 142664831 142664941 -6118531 + MER69 DNA AcHobo 591 701 -525 * 452 194 167 35 chr11 142664932 142665076 -6118396 + MER69 DNA AcHobo 2364 2526 0 770 280 141 47 chr11 142665697 142666437 -6117035 - L1ME4a LINE L1 -4 6117 5309 798 92 23 0 chr11 142666860 142666990 -6116482 + (TAGA)n Simple_repeat Simple_repeat 1 133 0 347 293 62 58 chr11 142667439 142667526 -6115946 - MIR SINE MIR -53 209 124 1018 226 135 38 chr11 142667526 142667867 -6115605 - MLT1A2 LTR MaLR 0 374 1 347 293 62 58 chr11 142667867 142667987 -6115485 - MIR SINE MIR -138 124 1 326 389 35 0 chr11 142667992 142668105 -6115367 + L2 LINE L2 3156 3272 0 352 350 65 36 chr11 142669231 142669537 -6113935 - L1ME4a LINE L1 -229 5892 5578 275 263 34 42 chr11 142671531 142671649 -6111823 + (CATATA)n Simple_repeat Simple_repeat 2 118 0 183 184 0 0 chr11 142671658 142671696 -6111776 + (CA)n Simple_repeat Simple_repeat 1 38 0 246 342 43 0 chr11 142671749 142671866 -6111606 + MIR SINE MIR 67 188 -74 1844 150 35 41 chr11 142672457 142672771 -6110701 - AluSx SINE Alu 0 312 1 225 260 14 27 chr11 142673194 142673267 -6110205 + MER5B DNA MER1_type 106 177 -1 291 283 11 0 chr11 142673427 142673519 -6109953 + L1MC4a LINE L1 7116 7208 -600 448 231 33 0 chr11 142673536 142673657 -6109815 + MLT1F1 LTR MaLR 1 125 -442 1435 177 90 7 chr11 142673657 142674069 -6109403 + L1MD3 LINE L1 7404 7985 -10 269 352 129 47 chr11 142675092 142675558 -6107914 - L3 LINE CR1 -2 1575 1072 228 235 20 0 chr11 142675894 142675945 -6107527 + L2 LINE L2 3251 3302 -11 2111 151 37 46 chr11 142677194 142677235 -6106237 - MSTA LTR MaLR 0 428 388 2224 109 7 0 chr11 142677235 142677528 -6105944 + AluSg SINE Alu 1 295 -15 2111 151 37 46 chr11 142677528 142677722 -6105750 - MSTA LTR MaLR -40 388 196 1741 174 3 7 chr11 142677722 142678032 -6105440 - AluJb SINE Alu -3 309 1 2111 151 37 46 chr11 142678032 142678227 -6105245 - MSTA LTR MaLR -232 196 1 9980 218 88 27 chr11 142679176 142679926 -6103546 + L1MA9 LINE L1 1235 1937 -5335 1835 184 36 6 chr11 142679926 142680263 -6103209 + MER7A DNA MER2_type 2 346 0 9980 218 88 27 chr11 142680263 142681542 -6101930 + L1MA9 LINE L1 1937 3136 -4136 270 0 0 0 chr11 142681542 142681572 -6101900 + (CA)n Simple_repeat Simple_repeat 1 30 0 9980 218 88 27 chr11 142681572 142681941 -6101531 + L1MA9 LINE L1 3136 3481 -3791 2112 139 58 6 chr11 142681941 142682287 -6101185 + THE1B LTR MaLR 1 364 0 9980 218 88 27 chr11 142682287 142685205 -6098267 + L1MA9 LINE L1 3481 6672 -600 1359 191 83 14 chr11 142685205 142685306 -6098166 + AluJb SINE Alu 1 94 -218 437 39 26 26 chr11 142685306 142685384 -6098088 + (TAAA)n Simple_repeat Simple_repeat 3 80 0 1359 191 83 14 chr11 142685384 142685560 -6097912 + AluJb SINE Alu 94 297 -15 9980 218 88 27 chr11 142685560 142686200 -6097272 + L1MA9 LINE L1 6672 7271 -1 237 301 169 5 chr11 142686331 142686550 -6096922 - HAL1 LINE L1 -1048 1459 1205 25 51 0 0 chr11 142686716 142686755 -6096717 + AT_rich Low_complexity Low_complexity 1 39 0 198 0 0 0 chr11 142687201 142687223 -6096249 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 343 186 62 149 chr11 142687477 142687638 -6095834 - HAL1 LINE L1 -2329 178 32 329 260 67 27 chr11 142688570 142688720 -6094752 - MLT1J LTR MaLR -344 167 12 239 324 0 14 chr11 142688737 142688811 -6094661 + L2 LINE L2 3231 3303 -10 2195 94 16 13 chr11 142688826 142689134 -6094338 + AluSc SINE Alu 1 309 0 180 0 0 0 chr11 142689355 142689375 -6094097 + (C)n Simple_repeat Simple_repeat 1 20 0 333 0 0 0 chr11 142689402 142689439 -6094033 + (A)n Simple_repeat Simple_repeat 1 37 0 230 300 75 0 chr11 142689462 142689542 -6093930 - MIR SINE MIR -63 145 60 383 311 28 0 chr11 142690877 142690983 -6092489 - L2 LINE L2 -6 3266 3158 374 242 21 0 chr11 142692470 142692565 -6090907 + MIR SINE MIR 112 208 -54 769 220 28 22 chr11 142693191 142693373 -6090099 + MER5A DNA MER1_type 3 185 -4 676 215 23 0 chr11 142693380 142693510 -6089962 + FLAM_A SINE Alu 1 133 0 2185 224 35 20 chr11 142694311 142694835 -6088637 + MER89 LTR ERV1 8 542 -17 2405 154 28 21 chr11 142694835 142695257 -6088215 + MSTB LTR MaLR 2 426 0 2185 224 35 20 chr11 142695257 142695276 -6088196 + MER89 LTR ERV1 542 559 0 406 309 106 5 chr11 142695476 142695683 -6087789 - MIR SINE MIR -25 237 10 233 289 7 86 chr11 142695939 142696091 -6087381 + MER5B DNA MER1_type 20 159 -19 21 0 0 0 chr11 142696165 142696186 -6087286 + AT_rich Low_complexity Low_complexity 1 21 0 787 233 34 0 chr11 142697237 142697413 -6086059 - MER5A DNA MER1_type -7 182 1 323 296 84 35 chr11 142697724 142697866 -6085606 + MIR SINE MIR 93 241 -21 1013 321 82 45 chr11 142697934 142698149 -6085323 + L2 LINE L2 2076 2281 -1033 2382 84 0 0 chr11 142698149 142698448 -6085024 - AluSc SINE Alu -10 299 1 1013 321 82 45 chr11 142698448 142698839 -6084633 + L2 LINE L2 2281 2705 -609 652 277 84 13 chr11 142698885 142699121 -6084351 - MIR SINE MIR -8 254 2 300 357 82 13 chr11 142699128 142699564 -6083908 + L2 LINE L2 2715 3244 -69 1279 118 19 5 chr11 142700288 142700500 -6082972 + L1MA4 LINE L1 5571 5785 -515 1209 200 18 7 chr11 142700500 142700777 -6082695 + L1MA4 LINE L1 6012 6294 -6 293 175 32 0 chr11 142701554 142701617 -6081855 + LTR51 LTR ERV1 1 65 -606 24 0 0 0 chr11 142702433 142702457 -6081015 + AT_rich Low_complexity Low_complexity 1 24 0 208 318 125 0 chr11 142703992 142704080 -6079392 - L2 LINE L2 -14 3258 3160 248 175 0 50 chr11 142704443 142704523 -6078949 + (TA)n Simple_repeat Simple_repeat 2 77 0 2269 185 47 72 chr11 142704674 142705274 -6078198 + LTR8A LTR ERV1 143 727 0 233 252 76 92 chr11 142706844 142706975 -6076497 - L2 LINE L2 -7 3306 3178 317 271 42 59 chr11 142708984 142709102 -6074370 - MIR SINE MIR -88 174 59 1240 140 11 0 chr11 142709384 142709570 -6073902 + AluSg/x SINE Alu 107 294 -18 358 98 20 0 chr11 142710484 142710535 -6072937 + AluSq SINE Alu 107 158 -145 1021 222 0 0 chr11 142711992 142712195 -6071277 - MER3 DNA MER1_type -6 203 1 932 102 0 0 chr11 142712358 142712495 -6070977 + L1PB1 LINE L1 5991 6127 -24 427 117 0 0 chr11 142712495 142712568 -6070904 + L1PB1 LINE L1 6073 6149 -2 409 360 112 24 chr11 142712616 142713285 -6070187 - L2 LINE L2 -467 2847 2120 255 287 29 11 chr11 142713517 142713625 -6069847 + MIR SINE MIR 96 205 -57 2280 167 16 25 chr11 142713644 142714081 -6069391 - Tigger2a DNA MER2_type -1 433 1 744 128 128 32 chr11 142714804 142714960 -6068512 - AluY SINE Alu -14 297 127 317 179 12 0 chr11 142715387 142715471 -6068001 + (TG)n Simple_repeat Simple_repeat 2 86 0 325 287 9 9 chr11 142715949 142716057 -6067415 + (TA)n Simple_repeat Simple_repeat 2 109 0 234 136 0 0 chr11 142716196 142716240 -6067232 + (CA)n Simple_repeat Simple_repeat 1 44 0 238 272 99 0 chr11 142716686 142716767 -6066705 - MIR3 SINE MIR -12 196 108 239 130 19 0 chr11 142716858 142716912 -6066560 + (CA)n Simple_repeat Simple_repeat 2 56 0 252 298 40 53 chr11 142717540 142717691 -6065781 + MIR SINE MIR 64 212 -50 257 267 13 27 chr11 142717785 142717860 -6065612 + MIR3 SINE MIR 81 154 -54 318 26 0 0 chr11 142718628 142718667 -6064805 + (CA)n Simple_repeat Simple_repeat 2 40 0 386 276 33 39 chr11 142718746 142718927 -6064545 + MIR SINE MIR 9 188 -74 310 246 0 0 chr11 142719175 142719236 -6064236 - L2 LINE L2 -6 3266 3206 289 340 65 40 chr11 142721240 142721564 -6061908 + L2 LINE L2 1859 2190 -1124 436 143 0 6 chr11 142721806 142721924 -6061548 + MER53 DNA DNA 1 187 -2 393 343 43 72 chr11 142722467 142722744 -6060728 + L2 LINE L2 2991 3259 -13 231 297 142 92 chr11 142722951 142723254 -6060218 - L2 LINE L2 0 3272 2955 321 26 0 0 chr11 142723767 142723805 -6059667 + (TC)n Simple_repeat Simple_repeat 1 38 0 226 184 26 0 chr11 142723814 142723890 -6059582 + (TA)n Simple_repeat Simple_repeat 1 78 0 249 357 62 18 chr11 142724355 142724467 -6059005 - L2 LINE L2 -19 3253 3137 1377 180 27 16 chr11 142725367 142725623 -6057849 + MER74A LTR ERVL 15 273 -285 2543 89 40 6 chr11 142725625 142725975 -6057497 + THE1C LTR MaLR 14 375 0 952 271 50 7 chr11 142725975 142726268 -6057204 + MER74B LTR ERVL 317 622 0 369 314 109 18 chr11 142726929 142727203 -6056269 + L1ME LINE L1 5431 5729 -392 1273 114 0 0 chr11 142727233 142727399 -6056073 + AluSc SINE Alu 1 166 -143 225 0 0 0 chr11 142727482 142727507 -6055965 + (TG)n Simple_repeat Simple_repeat 2 26 0 1840 233 63 80 chr11 142727534 142728260 -6055212 + L1ME2 LINE L1 5442 6155 -9 267 31 0 0 chr11 142728300 142728332 -6055140 + (TA)n Simple_repeat Simple_repeat 2 33 0 225 94 0 0 chr11 142728387 142728419 -6055053 + (TA)n Simple_repeat Simple_repeat 2 33 0 1524 42 0 21 chr11 142728419 142728609 -6054863 - AluY SINE Alu -16 295 110 198 0 0 0 chr11 142729090 142729112 -6054360 + (A)n Simple_repeat Simple_repeat 1 22 0 198 0 0 0 chr11 142729197 142729219 -6054253 + (T)n Simple_repeat Simple_repeat 1 22 0 207 0 0 0 chr11 142729335 142729358 -6054114 + (T)n Simple_repeat Simple_repeat 1 23 0 313 316 24 48 chr11 142729462 142729630 -6053842 - MIR SINE MIR -66 196 33 1112 87 0 0 chr11 142730307 142730445 -6053027 - AluSg/x SINE Alu -21 291 154 523 253 156 33 chr11 142730937 142731238 -6052234 - MLT1L LTR MaLR -41 574 237 2162 130 49 26 chr11 142732957 142733304 -6050168 + THE1B LTR MaLR 1 355 -9 10756 89 30 60 chr11 142733304 142733658 -6049814 + THE1B-int LTR MaLR 16 379 -1201 610 60 24 0 chr11 142733658 142733741 -6049731 - Alu SINE Alu -4 305 221 10756 89 30 60 chr11 142733741 142734915 -6048557 + THE1B-int LTR MaLR 379 1579 -1 1080 94 94 0 chr11 142734926 142735086 -6048386 + THE1B LTR MaLR 1 175 -189 350 318 150 30 chr11 142735902 142736135 -6047337 - MIR SINE MIR 0 262 2 2476 83 0 0 chr11 142737209 142737509 -6045963 + AluY SINE Alu 1 300 -11 1937 266 84 8 chr11 142738758 142739416 -6044056 + L1ME3 LINE L1 5450 6157 -5 353 343 49 14 chr11 142740489 142740632 -6042840 + MIR3 SINE MIR 16 163 -45 314 358 73 6 chr11 142742743 142742908 -6040564 + MIR SINE MIR 56 231 -31 2166 113 0 31 chr11 142742955 142743274 -6040198 + AluSc SINE Alu 1 309 0 230 305 94 47 chr11 142743415 142743543 -6039929 + L2 LINE L2 3180 3313 0 351 333 67 7 chr11 142745291 142745441 -6038031 + MIR SINE MIR 5 163 -99 1578 210 63 5 chr11 142745465 142745832 -6037640 + L1MA4 LINE L1 5912 6299 -1 446 341 44 51 chr11 142746582 142746855 -6036617 + L2 LINE L2 2532 2802 -512 203 384 113 6 chr11 142746914 142747073 -6036399 - MIR SINE MIR -85 177 2 322 294 47 131 chr11 142747216 142747559 -6035913 + L2 LINE L2 2932 3245 -27 259 283 131 58 chr11 142748965 142749308 -6034164 + L2 LINE L2 2945 3312 -1 437 196 141 0 chr11 142749495 142749587 -6033885 + MER81 DNA DNA 10 114 0 300 237 64 77 chr11 142749711 142749867 -6033605 + L3b LINE CR1 1240 1393 -190 218 331 68 23 chr11 142751992 142752125 -6031347 - MIR3 SINE MIR -2 206 68 385 346 15 0 chr11 142752981 142753111 -6030361 + MIR SINE MIR 64 195 -67 1064 184 45 0 chr11 142753215 142753416 -6030056 - MER2 DNA MER2_type -135 210 1 199 242 113 0 chr11 142753416 142753478 -6029994 + MIR SINE MIR 194 262 0 699 192 46 0 chr11 142754002 142754132 -6029340 - LTR8 LTR ERV1 -555 136 1 321 308 26 0 chr11 142754142 142754259 -6029213 + MIR3 SINE MIR 82 201 -7 213 357 0 0 chr11 142754388 142754458 -6029014 - L2 LINE L2 -8 3264 3195 262 321 107 24 chr11 142755061 142755229 -6028243 + L2 LINE L2 2299 2480 -834 1605 215 36 36 chr11 142755243 142755633 -6027839 - MLT1B LTR MaLR 0 390 1 414 272 52 22 chr11 142755675 142755811 -6027661 - MLT1J1 LTR MaLR -50 396 257 180 279 60 139 chr11 142755972 142755983 -6027489 + L2 LINE L2 2526 2536 -778 1463 113 10 0 chr11 142755983 142756186 -6027286 + AluSg/x SINE Alu 90 294 -18 180 279 60 139 chr11 142756186 142756330 -6027142 + L2 LINE L2 2536 2690 -624 919 196 25 15 chr11 142756330 142756534 -6026938 - L1MB3 LINE L1 -4 6179 5974 180 279 60 139 chr11 142756534 142756606 -6026866 + L2 LINE L2 2690 2766 -548 336 83 0 0 chr11 142756606 142756654 -6026818 + (CA)n Simple_repeat Simple_repeat 2 49 0 180 279 60 139 chr11 142756654 142756840 -6026632 + L2 LINE L2 2766 2908 -406 432 354 15 8 chr11 142756980 142757110 -6026362 + L2 LINE L2 3137 3267 -5 1887 105 3 51 chr11 142757212 142757525 -6025947 + AluY SINE Alu 1 298 -13 1599 185 120 3 chr11 142757629 142758010 -6025462 + LTR51 LTR ERV1 149 671 0 200 209 0 0 chr11 142758317 142758360 -6025112 + T-rich Low_complexity Low_complexity 2 44 0 277 187 77 184 chr11 142759568 142759894 -6023578 + MLT1F-int LTR MaLR 1074 1364 -7 883 243 19 10 chr11 142759901 142760107 -6023365 + MLT1F LTR MaLR 1 208 -334 495 90 0 64 chr11 142760107 142760185 -6023287 + MER31B LTR ERV1 1 73 -393 689 150 8 0 chr11 142760267 142760387 -6023085 - L1MC1 LINE L1 -428 5905 5785 812 111 0 0 chr11 142860393 142860501 -5922971 - FLAM_C SINE Alu -35 108 1 259 362 75 17 chr11 142860758 142860821 -5922651 + MIR SINE MIR 1 59 -203 829 174 0 0 chr11 142860821 142860953 -5922519 + FLAM_C SINE Alu 1 132 -1 259 362 75 17 chr11 142860953 142861063 -5922409 + MIR SINE MIR 59 184 -78 602 170 15 44 chr11 142861246 142861381 -5922091 - FLAM_C SINE Alu -7 136 6 21 36 0 0 chr11 142861631 142861659 -5921813 + GC_rich Low_complexity Low_complexity 1 28 0 196 269 167 51 chr11 142861906 142862062 -5921410 + MIR3 SINE MIR 21 194 -14 450 264 54 14 chr11 142862062 142862210 -5921262 + MIR SINE MIR 90 243 -19 186 284 14 40 chr11 142863588 142863662 -5919810 - L2 LINE L2 -2810 504 433 193 273 0 0 chr11 142864401 142864445 -5919027 + MIR3 SINE MIR 111 154 -54 866 222 5 10 chr11 142866247 142866441 -5917031 - MER41D LTR ERV1 0 557 365 2163 105 16 0 chr11 142866775 142867080 -5916392 + AluSx SINE Alu 1 310 -2 183 80 0 0 chr11 142868232 142868257 -5915215 + (GAA)n Simple_repeat Simple_repeat 2 26 0 3719 134 32 51 chr11 142868819 142868878 -5914594 - L1MA2 LINE L1 -107 6197 6138 2139 63 35 14 chr11 142868878 142869185 -5914287 - AluY SINE Alu 0 313 1 2049 112 7 3 chr11 142869188 142869483 -5913989 - AluSg SINE Alu -14 296 1 3719 134 32 51 chr11 142869483 142869566 -5913906 - L1MA2 LINE L1 -168 6136 6053 288 0 0 0 chr11 142869566 142869598 -5913874 + (TG)n Simple_repeat Simple_repeat 1 32 0 3719 134 32 51 chr11 142869598 142869813 -5913659 - L1MA2 LINE L1 -251 6053 5835 239 0 32 0 chr11 142869813 142869844 -5913628 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 2142 91 0 0 chr11 142869848 142870124 -5913348 - AluSx SINE Alu -36 276 1 3719 134 32 51 chr11 142870124 142870512 -5912960 - L1MA2 LINE L1 -472 5832 5438 2087 125 0 0 chr11 142870512 142870809 -5912663 + AluSx SINE Alu 1 297 -15 3719 134 32 51 chr11 142870809 142870846 -5912626 - L1MA2 LINE L1 -866 5438 5402 2309 93 0 10 chr11 142870846 142871159 -5912313 - AluY SINE Alu -1 310 1 2159 121 0 0 chr11 142871161 142871459 -5912013 - AluSq SINE Alu -15 298 1 3719 134 32 51 chr11 142871459 142871728 -5911744 - L1MA2 LINE L1 -903 5401 5169 2137 128 0 3 chr11 142871728 142872041 -5911431 - AluSp SINE Alu -1 312 1 3719 134 32 51 chr11 142872041 142872275 -5911197 - L1MA2 LINE L1 -1135 5169 4932 1547 154 20 45 chr11 142872284 142872576 -5910896 - AluJo SINE Alu -27 285 1 209 222 272 0 chr11 142873086 142873167 -5910305 + L2 LINE L2 3199 3301 -12 2020 120 3 7 chr11 142873194 142873495 -5909977 + AluSx SINE Alu 1 300 -12 300 308 70 23 chr11 142873517 142873731 -5909741 - L2 LINE L2 -412 2902 2679 2319 82 0 3 chr11 142874052 142874355 -5909117 + AluSq SINE Alu 1 302 -11 2389 75 3 0 chr11 142874355 142874661 -5908811 + AluY SINE Alu 1 307 -4 261 238 59 40 chr11 142874782 142874853 -5908619 + MIR3 SINE MIR 71 146 -62 1791 174 3 0 chr11 142874853 142875151 -5908321 + AluJb SINE Alu 1 299 -13 261 238 59 40 chr11 142875151 142875180 -5908292 + MIR3 SINE MIR 146 173 -35 1900 101 52 7 chr11 142875370 142875656 -5907816 + AluSx SINE Alu 3 301 -11 289 218 11 23 chr11 142875662 142875749 -5907723 - MIR SINE MIR -62 146 61 1292 122 0 0 chr11 142875936 142876124 -5907348 + AluSg/x SINE Alu 121 308 -2 1056 267 39 19 chr11 142876166 142876529 -5906943 - L2 LINE L2 -6 3266 2897 1831 134 35 7 chr11 142876700 142876990 -5906482 - AluSx SINE Alu -14 298 1 1128 145 58 70 chr11 142877006 142877090 -5906382 + AluSx SINE Alu 64 148 -164 1804 112 60 4 chr11 142877090 142877351 -5906121 + AluSx SINE Alu 11 287 -20 216 0 0 0 chr11 142877351 142877375 -5906097 + (CAAT)n Simple_repeat Simple_repeat 1 24 0 1128 145 58 70 chr11 142877380 142877537 -5905935 + AluSx SINE Alu 148 302 -10 2099 107 3 0 chr11 142877540 142877861 -5905611 + AluSq SINE Alu 1 313 0 252 274 0 0 chr11 142878306 142878390 -5905082 - MIR SINE MIR -132 130 47 675 112 25 19 chr11 142878802 142879179 -5904293 + MSR1 Satellite Satellite 1 379 -18 190 160 0 53 chr11 142879485 142879579 -5903893 + CT-rich Low_complexity Low_complexity 1 89 0 1047 123 0 7 chr11 142879767 142879922 -5903550 - AluSq SINE Alu -159 154 1 261 0 0 0 chr11 142880039 142880068 -5903404 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 1101 112 31 0 chr11 142880471 142880632 -5902840 - AluSg/x SINE Alu -13 299 134 2316 84 3 0 chr11 142880632 142880931 -5902541 - AluSx SINE Alu -12 300 1 1002 235 85 33 chr11 142880996 142881488 -5901984 + L2 LINE L2 2528 3070 -243 1947 67 60 4 chr11 142881488 142881784 -5901688 + AluSx SINE Alu 1 311 0 1002 235 85 33 chr11 142881784 142881846 -5901626 + L2 LINE L2 3070 3127 -186 440 330 9 45 chr11 142881846 142882070 -5901402 - Charlie8 DNA MER1_type -2201 216 1 231 314 0 23 chr11 142882070 142882156 -5901316 - MIR3 SINE MIR -37 171 88 666 237 27 102 chr11 142883215 142883510 -5899962 - L2 LINE L2 0 3272 3000 502 286 65 25 chr11 142883510 142883906 -5899566 - L1P5 LINE L1 -679 5477 5060 1855 78 23 78 chr11 142883909 142884216 -5899256 - AluSq SINE Alu -1 312 23 1931 114 66 0 chr11 142884379 142884668 -5898804 - AluSq SINE Alu -5 308 1 310 359 56 0 chr11 142884715 142884857 -5898615 - L1M4 LINE L1 -1214 4932 4783 2230 92 0 23 chr11 142884962 142885099 -5898373 + AluSp SINE Alu 3 142 -171 2348 86 0 0 chr11 142885099 142885400 -5898072 + AluSg SINE Alu 3 303 -7 2230 92 0 23 chr11 142885400 142885566 -5897906 + AluSp SINE Alu 142 299 -14 1775 176 0 3 chr11 142885675 142885981 -5897491 + AluSq SINE Alu 1 305 -8 887 172 43 0 chr11 142885986 142886189 -5897283 + AluJb SINE Alu 142 312 0 2158 90 3 22 chr11 142886325 142886637 -5896835 + AluSg1 SINE Alu 1 306 -3 1808 128 9 55 chr11 142887068 142887395 -5896077 - AluJb SINE Alu 0 312 1 2169 110 7 0 chr11 142888174 142888484 -5894988 + AluSq SINE Alu 1 312 -1 2189 85 3 0 chr11 142888767 142889078 -5894394 - AluSx SINE Alu 0 312 1 311 313 96 0 chr11 142889108 142889223 -5894249 + L2 LINE L2 3146 3271 -1 285 284 112 78 chr11 142889259 142889491 -5893981 - MIR SINE MIR -1 261 22 254 302 12 23 chr11 142889539 142889625 -5893847 + Charlie1 DNA MER1_type 2 86 -2675 1807 119 35 14 chr11 142889625 142889910 -5893562 + AluSx SINE Alu 1 291 -21 1250 122 5 11 chr11 142889972 142890160 -5893312 - AluSc SINE Alu -35 274 88 1242 163 12 80 chr11 142890171 142890296 -5893176 + Charlie1 DNA MER1_type 2408 2540 -221 1409 195 0 46 chr11 142890296 142890391 -5893081 + AluJo SINE Alu 1 99 -213 2212 95 7 0 chr11 142890391 142890686 -5892786 + AluSp SINE Alu 1 297 -16 1409 195 0 46 chr11 142890686 142890893 -5892579 + AluJo SINE Alu 99 289 -23 1242 163 12 80 chr11 142890893 142890962 -5892510 + Charlie1 DNA MER1_type 2540 2612 -149 2172 96 3 3 chr11 142890962 142891264 -5892208 - AluSg SINE Alu -8 302 1 1242 163 12 80 chr11 142891264 142891278 -5892194 + Charlie1 DNA MER1_type 2612 2625 -136 566 204 74 9 chr11 142891278 142891429 -5892043 - FLAM_A SINE Alu 0 158 1 1242 163 12 80 chr11 142891429 142891542 -5891930 + Charlie1 DNA MER1_type 2625 2710 -51 1146 142 19 24 chr11 142891544 142891749 -5891723 - AluJo SINE Alu -21 291 88 2069 74 3 47 chr11 142891779 142892096 -5891376 + AluSp SINE Alu 1 304 0 2048 128 0 13 chr11 142892102 142892238 -5891234 + AluSx SINE Alu 1 137 -175 2144 112 0 0 chr11 142892238 142892533 -5890939 + AluSx SINE Alu 1 295 -17 2048 128 0 13 chr11 142892533 142892702 -5890770 + AluSx SINE Alu 137 302 -10 2051 89 12 55 chr11 142892845 142893171 -5890301 + AluSx SINE Alu 1 312 0 1618 157 0 37 chr11 142893205 142893504 -5889968 + AluJb SINE Alu 13 300 -12 2045 119 0 44 chr11 142893572 142893757 -5889715 - AluSg SINE Alu -4 306 139 2192 106 0 22 chr11 142893757 142894077 -5889395 - AluSp SINE Alu 0 313 1 2045 119 0 44 chr11 142894077 142894211 -5889261 - AluSg SINE Alu -171 139 1 427 326 8 0 chr11 142894278 142894410 -5889062 - MIR SINE MIR -79 183 51 1503 155 43 14 chr11 142894463 142894740 -5888732 - AluJo SINE Alu -14 298 14 2013 118 0 17 chr11 142894765 142895061 -5888411 - AluSx SINE Alu -21 291 1 289 301 36 0 chr11 142895158 142895241 -5888231 + MIR3 SINE MIR 106 191 -17 285 206 0 15 chr11 142895271 142895339 -5888133 - MLT1D LTR MaLR 0 505 439 2263 80 10 0 chr11 142895340 142895639 -5887833 + AluY SINE Alu 1 302 -9 592 146 0 131 chr11 142895642 142895772 -5887700 - AluJo/FLAM SINE Alu -189 123 11 584 250 0 0 chr11 142895805 142895917 -5887555 + FLAM_A SINE Alu 1 112 -30 1998 128 7 3 chr11 142895962 142896260 -5887212 + AluSx SINE Alu 1 299 -13 2928 156 12 30 chr11 142896289 142896854 -5886618 + L1MA7 LINE L1 5594 6148 -143 22 0 0 0 chr11 142896861 142896883 -5886589 + AT_rich Low_complexity Low_complexity 1 22 0 2053 101 3 10 chr11 142896904 142897201 -5886271 - AluY SINE Alu -16 295 1 814 172 0 0 chr11 142897225 142897359 -5886113 - AluJo SINE Alu -178 134 1 364 138 0 38 chr11 142897361 142897441 -5886031 - L1M3 LINE L1 -660 5674 5598 1021 171 11 5 chr11 142897444 142897631 -5885841 - AluSg/x SINE Alu -2 308 121 346 162 0 0 chr11 142897632 142897700 -5885772 - AluSp/q SINE Alu -2 301 234 231 184 20 0 chr11 142997964 142998013 -5785459 - MLT2C2 LTR ERVL -5 459 410 257 242 0 0 chr11 142998036 142998102 -5785370 + (TA)n Simple_repeat Simple_repeat 2 67 0 14067 120 18 1 chr11 142998110 143000117 -5783355 + Tigger1 DNA MER2_type 1 2041 -377 260 310 11 0 chr11 143001124 143001211 -5782261 + CT-rich Low_complexity Low_complexity 2 89 0 306 290 11 0 chr11 143002205 143002298 -5781174 + MIR3 SINE MIR 88 181 -27 300 267 0 86 chr11 143002582 143002698 -5780774 + L2 LINE L2 3208 3313 0 2298 81 3 7 chr11 143003876 143004174 -5779298 + AluSg SINE Alu 1 297 -13 180 0 0 0 chr11 143004318 143004338 -5779134 + (TTA)n Simple_repeat Simple_repeat 1 20 0 494 309 52 33 chr11 143004915 143005125 -5778347 + MIR SINE MIR 3 216 -46 318 297 109 0 chr11 143005388 143005516 -5777956 - MIR SINE MIR -97 165 24 279 336 25 49 chr11 143005656 143005778 -5777694 + MIR SINE MIR 27 145 -63 4065 237 70 55 chr11 143005842 143006095 -5777377 - L1MEc LINE L1 -2550 4094 3846 2012 139 7 0 chr11 143006095 143006397 -5777075 - AluSc SINE Alu -5 304 1 4065 237 70 55 chr11 143006397 143008095 -5775377 - L1MEc LINE L1 -2798 3846 2167 493 257 48 41 chr11 143008121 143008450 -5775022 - L1M4c LINE L1 -4303 2368 1905 254 188 0 58 chr11 143008448 143008517 -5774955 - L1MC1 LINE L1 0 6333 6269 * 673 193 8 0 chr11 143008533 143008652 -5774820 - L1MC1 LINE L1 -140 6193 6074 1115 238 36 74 chr11 143008658 143008800 -5774672 - L1M4 LINE L1 -1701 4445 4299 2199 143 30 108 chr11 143008800 143009262 -5774210 - MSTC LTR MaLR -2 426 1 1115 238 36 74 chr11 143009262 143009539 -5773933 - L1M4 LINE L1 -1847 4299 4042 764 125 268 18 chr11 143009570 143009738 -5773734 - L1PB1 LINE L1 -1 6150 5941 * 1839 255 85 27 chr11 143009731 143010656 -5772816 - L1M4c LINE L1 -4731 1915 942 182 273 0 0 chr11 143011803 143011847 -5771625 + L2 LINE L2 3261 3304 -9 538 297 78 117 chr11 143013855 143014963 -5768509 + L2 LINE L2 835 1898 -1416 2762 43 9 0 chr11 143014964 143015290 -5768182 + L1P3 LINE L1 5388 5716 -438 384 332 113 8 chr11 143015332 143015579 -5767893 + L2 LINE L2 1990 2262 -1052 705 290 109 25 chr11 143015624 143015990 -5767482 - L2 LINE L2 0 3313 2917 441 0 0 0 chr11 143016096 143016145 -5767327 + (A)n Simple_repeat Simple_repeat 1 49 0 377 271 100 24 chr11 143016568 143016738 -5766734 + Tigger8 DNA MER2_type 455 637 -29 2217 191 79 18 chr11 143018474 143019017 -5764455 - Charlie1a DNA MER1_type 0 1455 880 315 133 17 0 chr11 143019017 143019077 -5764395 + L1MD3 LINE L1 7927 7987 -8 * 1139 186 37 16 chr11 143019074 143019316 -5764156 + L1MB7 LINE L1 5315 5561 -613 4122 156 23 6 chr11 143019319 143020018 -5763454 - MER50 LTR ERV1 -23 711 1 228 176 0 0 chr11 143020018 143020052 -5763420 + L1MB7 LINE L1 5560 5593 -571 1096 198 35 13 chr11 143020554 143020786 -5762686 - MLT1F1 LTR MaLR 0 567 331 2060 199 53 72 chr11 143020786 143020864 -5762608 + L1MB7 LINE L1 5593 5671 -513 2095 210 106 77 chr11 143020864 143021570 -5761902 - LTR8A LTR ERV1 0 727 1 2060 199 53 72 chr11 143021570 143021731 -5761741 + L1MB7 LINE L1 5671 5834 -350 3451 213 48 55 chr11 143021731 143022597 -5760875 + MER21B LTR ERV1 1 860 -3 2060 199 53 72 chr11 143022597 143022925 -5760547 + L1MB7 LINE L1 5834 6150 -34 2129 183 53 13 chr11 143022932 143023386 -5760086 - Charlie1a DNA MER1_type -564 891 420 671 164 76 58 chr11 143023391 143023562 -5759910 - MER58C DNA MER1_type -5 210 37 547 247 53 7 chr11 143023579 143023729 -5759743 - Charlie1a DNA MER1_type -1041 414 258 1032 225 56 24 chr11 143023774 143024023 -5759449 - Charlie1a DNA MER1_type -1198 257 1 1398 197 92 16 chr11 143024024 143024489 -5758983 - MER34 LTR ERV1 0 542 1 548 211 72 20 chr11 143024599 143024751 -5758721 + MIR SINE MIR 77 236 -26 1751 215 34 5 chr11 143025036 143025417 -5758055 - Charlie4a DNA MER1_type -101 407 16 270 0 0 0 chr11 143025846 143025876 -5757596 + (CA)n Simple_repeat Simple_repeat 2 31 0 719 255 61 8 chr11 143026608 143026855 -5756617 - MLT1D LTR MaLR 0 505 246 864 322 35 24 chr11 143027287 143027660 -5755812 + L2 LINE L2 2935 3311 -2 286 229 33 0 chr11 143027751 143027812 -5755660 + MIR SINE MIR 84 146 -116 309 341 52 29 chr11 143028101 143028274 -5755198 - MIR SINE MIR -50 212 36 274 256 248 16 chr11 143030096 143030225 -5753247 + L3 LINE CR1 1301 1459 -118 220 297 0 47 chr11 143030262 143030326 -5753146 + L2 LINE L2 3206 3266 -6 208 167 24 0 chr11 143031200 143031242 -5752230 + GA-rich Low_complexity Low_complexity 1 43 0 210 37 0 0 chr11 143032005 143032032 -5751440 + (CAAAAA)n Simple_repeat Simple_repeat 3 29 0 822 265 15 5 chr11 143032182 143032378 -5751094 + MER58A DNA MER1_type 16 213 -11 217 287 140 70 chr11 143032382 143032525 -5750947 + L2 LINE L2 2578 2730 -584 2530 83 50 42 chr11 143032734 143033095 -5750377 - THE1B LTR MaLR 0 364 1 235 260 13 65 chr11 143033346 143033423 -5750049 - L2 LINE L2 0 3313 3241 2137 86 0 28 chr11 143033627 143033918 -5749554 + AluSp SINE Alu 27 309 -4 1920 125 73 0 chr11 143035111 143035400 -5748072 - AluSg SINE Alu 0 310 1 457 276 99 6 chr11 143035861 143036042 -5747430 - MIR SINE MIR -2 260 63 760 289 42 56 chr11 143036425 143036782 -5746690 - Tigger8 DNA MER2_type -307 359 8 289 308 57 44 chr11 143037576 143037735 -5745737 - MIR SINE MIR -6 256 96 292 329 82 14 chr11 143037851 143037997 -5745475 + MIR SINE MIR 36 191 -71 201 308 0 0 chr11 143037998 143038063 -5745409 + (CATATA)n Simple_repeat Simple_repeat 5 69 0 2442 81 3 0 chr11 143038141 143038449 -5745023 + AluY SINE Alu 1 309 -2 233 321 53 59 chr11 143039002 143039189 -5744283 - MIR3 SINE MIR -7 201 16 3089 167 55 37 chr11 143040013 143040516 -5742956 + MER39B LTR ERV1 1 519 -134 2241 119 0 0 chr11 143040516 143040826 -5742646 - AluSx SINE Alu -2 310 1 3089 167 55 37 chr11 143040826 143040944 -5742528 + MER39B LTR ERV1 519 633 -20 424 309 28 7 chr11 143040953 143041094 -5742378 + MIR3 SINE MIR 37 173 -51 213 300 0 0 chr11 143041456 143041506 -5741966 - L2 LINE L2 -21 3251 3202 198 191 0 0 chr11 143041760 143041802 -5741670 + (CA)n Simple_repeat Simple_repeat 1 42 0 267 333 0 21 chr11 143043333 143043429 -5740043 - MIR3 SINE MIR -34 174 81 253 273 74 3 chr11 143044717 143044811 -5738661 - MIR SINE MIR -63 145 54 243 0 0 0 chr11 143044884 143044911 -5738561 + (T)n Simple_repeat Simple_repeat 1 27 0 219 329 37 0 chr11 143046684 143046766 -5736706 - MIR SINE MIR -88 174 90 24 24 0 24 chr11 143046896 143046907 -5736565 + AT_rich Low_complexity Low_complexity 1 11 -30 4295 156 20 67 chr11 143046907 143047785 -5735687 + L1MA8 LINE L1 5449 6285 -6 24 24 0 24 chr11 143047785 143047815 -5735657 + AT_rich Low_complexity Low_complexity 11 41 0 976 171 94 5 chr11 143047817 143047873 -5735599 - MER2 DNA MER2_type 0 345 295 539 140 11 0 chr11 143047873 143047966 -5735506 + L1MA4A LINE L1 6205 6298 -5 976 171 94 5 chr11 143047966 143048170 -5735302 - MER2 DNA MER2_type -50 295 14 189 239 0 0 chr11 143048725 143048771 -5734701 + MIR SINE MIR 212 257 -5 261 297 58 29 chr11 143049145 143049283 -5734189 - MIR SINE MIR -89 173 32 454 101 13 13 chr11 143050983 143051062 -5732410 + (TTCC)n Simple_repeat Simple_repeat 4 82 0 292 192 90 51 chr11 143051843 143051921 -5731551 + MIR SINE MIR 71 151 -111 231 317 0 0 chr11 143051990 143052050 -5731422 + (TCCA)n Simple_repeat Simple_repeat 1 60 0 1127 99 12 6 chr11 143052051 143052212 -5731260 - AluSp SINE Alu -13 300 139 929 96 22 7 chr11 143052312 143052448 -5731024 - AluSp SINE Alu -175 138 1 248 356 30 23 chr11 143054103 143054235 -5729237 + MIR SINE MIR 48 180 -82 1647 113 0 9 chr11 143054650 143054879 -5728593 + AluSc SINE Alu 66 292 -17 1134 206 73 105 chr11 143054916 143055311 -5728161 + MLT2B1 LTR ERVL 1 474 -41 214 195 0 0 chr11 143055316 143055357 -5728115 + (TA)n Simple_repeat Simple_repeat 1 41 0 239 53 0 26 chr11 143055389 143055427 -5728045 + (TCTA)n Simple_repeat Simple_repeat 4 40 0 243 196 59 0 chr11 143055861 143055912 -5727560 - L2 LINE L2 -8 3305 3252 48 18 0 0 chr11 143056876 143056931 -5726541 + AT_rich Low_complexity Low_complexity 1 55 0 263 252 146 10 chr11 143057933 143058036 -5725436 - LTR16A LTR ERVL 0 450 334 30 27 0 0 chr11 143058293 143058330 -5725142 + AT_rich Low_complexity Low_complexity 1 37 0 180 373 24 32 chr11 143059491 143059617 -5723855 - L2 LINE L2 -216 3056 2932 249 310 102 43 chr11 143060411 143060598 -5722874 - MIR SINE MIR -56 206 9 243 314 68 94 chr11 143060602 143060701 -5722771 - L2 LINE L2 -932 2382 2282 270 204 0 0 chr11 143060701 143060755 -5722717 - MIR3 SINE MIR -2 206 153 243 314 68 94 chr11 143060755 143061061 -5722411 - L2 LINE L2 -1032 2282 1936 23 0 0 0 chr11 143062298 143062321 -5721151 + AT_rich Low_complexity Low_complexity 1 23 0 310 254 41 11 chr11 143062647 143062834 -5720638 - L1MC4a LINE L1 -306 5815 5746 26 30 0 0 chr11 143062881 143062914 -5720558 + AT_rich Low_complexity Low_complexity 1 33 0 956 263 159 27 chr11 143062926 143063485 -5719987 - MLT1G LTR MaLR -3 587 1 231 293 43 35 chr11 143063635 143063751 -5719721 + MIR3 SINE MIR 89 205 -3 1628 186 112 0 chr11 143063763 143064075 -5719397 + MER7A DNA MER2_type 2 346 0 186 43 0 0 chr11 143065541 143065564 -5717908 + (A)n Simple_repeat Simple_repeat 1 23 0 238 146 36 73 chr11 143066484 143066539 -5716933 + L2 LINE L2 3215 3267 -5 2504 62 0 34 chr11 143067247 143067569 -5715903 + AluY SINE Alu 1 311 0 542 276 0 0 chr11 143068268 143068391 -5715081 + L2 LINE L2 3190 3312 -1 2076 102 18 3 chr11 143069169 143069452 -5714020 + AluSq SINE Alu 1 287 -26 509 94 0 0 chr11 143069877 143069961 -5713511 + AluSg/x SINE Alu 215 298 0 267 325 118 44 chr11 143070682 143071140 -5712332 + L2 LINE L2 1717 2208 -1106 2204 180 108 44 chr11 143071188 143071709 -5711763 + MLT2B3 LTR ERVL 1 554 0 4719 217 37 9 chr11 143071709 143073177 -5710295 + HERVL-B3 LTR ERVL 1 1579 -4185 * 18960 155 40 8 chr11 143073174 143076294 -5707178 + HERVL-B3 LTR ERVL 2546 5764 0 2602 174 44 32 chr11 143076294 143076668 -5706804 + Ricksha DNA DNA 339 718 -1328 328 262 14 41 chr11 143076546 143076691 -5706781 + MLT2D LTR ERVL 313 453 -100 * 395 172 129 11 chr11 143076691 143076784 -5706688 + MLT2D LTR ERVL 311 414 0 329 383 72 3 chr11 143076906 143077196 -5706276 + L2 LINE L2 2398 2707 -607 1879 119 48 7 chr11 143077588 143077857 -5705615 + AluSg SINE Alu 1 280 -30 253 0 54 0 chr11 143077862 143077899 -5705573 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 3117 149 175 10 chr11 143079261 143079937 -5703535 + LTR48 LTR ERV1 1 787 0 1196 84 0 36 chr11 143080088 143080255 -5703217 + MER4B LTR ERV1 1 161 -449 400 169 0 0 chr11 143080258 143080358 -5703114 + FLAM SINE Alu 68 124 -9 2266 90 10 3 chr11 143080995 143081285 -5702187 - AluSq SINE Alu -21 292 1 416 280 181 26 chr11 143081468 143081661 -5701811 + MIR SINE MIR 28 250 -12 2311 108 0 0 chr11 143083115 143083412 -5700060 + AluSc SINE Alu 13 309 0 223 250 0 0 chr11 143084040 143084084 -5699388 + (CA)n Simple_repeat Simple_repeat 1 44 0 288 344 32 0 chr11 143084084 143084177 -5699295 + MIR SINE MIR 27 122 -86 318 333 46 7 chr11 143086694 143086847 -5696625 - MIR3 SINE MIR -14 194 36 527 251 151 39 chr11 143091543 143091978 -5691494 - L1ME LINE L1 -527 5594 5111 22 70 0 0 chr11 143094097 143094140 -5689332 + AT_rich Low_complexity Low_complexity 1 43 0 716 203 34 108 chr11 143094208 143094503 -5688969 - L1ME3 LINE L1 -4 6158 5886 634 216 111 6 chr11 143095257 143095428 -5688044 + MER5A DNA MER1_type 1 189 0 270 316 73 15 chr11 143095695 143095831 -5687641 + L2 LINE L2 3168 3311 -2 1276 202 10 20 chr11 143095860 143096157 -5687315 + L1MB8 LINE L1 5873 6166 -12 365 212 0 0 chr11 143097713 143097779 -5685693 + MLT1L LTR MaLR 328 393 -222 2437 76 0 0 chr11 143097879 143098169 -5685303 - AluSg SINE Alu -20 290 1 1234 184 70 70 chr11 143098782 143099105 -5684367 + AluJb SINE Alu 1 323 0 206 295 16 0 chr11 143099298 143099359 -5684113 - MER5A DNA MER1_type -74 115 54 198 290 30 30 chr11 143099452 143099552 -5683920 - L2 LINE L2 -238 3034 2935 2401 94 3 0 chr11 143099746 143100053 -5683419 - AluSp SINE Alu -5 308 1 231 36 0 0 chr11 143100118 143100146 -5683326 + (TG)n Simple_repeat Simple_repeat 1 28 0 530 230 0 44 chr11 143100297 143100432 -5683040 - FLAM_C SINE Alu -14 129 1 3550 197 27 25 chr11 143100432 143101308 -5682164 - L1MCa LINE L1 -4669 1938 832 1608 254 94 35 chr11 143101305 143101868 -5681604 - L1MCa LINE L1 -5814 612 17 * 802 305 52 25 chr11 143101876 143102276 -5681196 + L2 LINE L2 2830 3240 -73 9523 216 81 34 chr11 143102439 143105586 -5677886 + L1MB3 LINE L1 538 3536 -2883 180 0 0 0 chr11 143105586 143105606 -5677866 + (CAA)n Simple_repeat Simple_repeat 2 21 0 9523 216 81 34 chr11 143105606 143106072 -5677400 + L1MB3 LINE L1 3536 3979 -2440 1680 192 0 32 chr11 143106072 143106380 -5677092 + AluJb SINE Alu 1 298 -14 9523 216 81 34 chr11 143106380 143108325 -5675147 + L1MB3 LINE L1 3979 6416 -3 441 293 30 0 chr11 143108326 143108459 -5675013 + L1ME1 LINE L1 6012 6148 -18 257 0 30 0 chr11 143108671 143108704 -5674768 + (TA)n Simple_repeat Simple_repeat 1 34 0 541 312 24 20 chr11 143108738 143108985 -5674487 - MIR SINE MIR -2 260 13 224 111 22 0 chr11 143109611 143109656 -5673816 + GA-rich Low_complexity Low_complexity 1 46 0 207 324 59 0 chr11 143109668 143109736 -5673736 - L2 LINE L2 0 3272 3201 2187 117 3 0 chr11 143110877 143111176 -5672296 + AluSp SINE Alu 1 300 -13 200 352 179 0 chr11 143112340 143112502 -5670970 + MIR SINE MIR 48 238 -24 799 35 50 7 chr11 143113515 143113656 -5669816 + (TG)n Simple_repeat Simple_repeat 1 147 0 290 247 103 62 chr11 143114862 143115008 -5668464 - MER5B DNA MER1_type 0 178 27 208 132 0 38 chr11 143120658 143120711 -5662761 + (AGGGGG)n Simple_repeat Simple_repeat 6 56 0 6770 146 54 7 chr11 143121642 143122258 -5661214 - Tigger3b DNA MER2_type -1798 1230 645 2592 60 0 0 chr11 143122258 143122559 -5660913 - AluY SINE Alu -10 301 1 6770 146 54 7 chr11 143122559 143123102 -5660370 - Tigger3b DNA MER2_type -2383 645 16 1148 165 21 0 chr11 143124283 143124477 -5658995 - MER46A DNA MER2_type -6 230 33 2526 211 19 33 chr11 143124597 143125176 -5658296 - MER74B LTR ERVL -2 620 50 316 313 105 54 chr11 143126171 143126465 -5657007 - L2 LINE L2 0 3313 3005 364 303 139 42 chr11 143126565 143127070 -5656402 - L2 LINE L2 -509 2805 2252 195 359 23 8 chr11 143127557 143127685 -5655787 + MIR SINE MIR 52 181 -81 1066 261 58 15 chr11 143127689 143128034 -5655438 - MLT1A2 LTR MaLR 0 374 11 246 316 0 0 chr11 143128047 143128126 -5655346 + MIR SINE MIR 184 262 0 220 244 37 37 chr11 143129134 143129216 -5654256 + MIR SINE MIR 36 117 -145 312 297 55 16 chr11 143129625 143129753 -5653719 + L2 LINE L2 3180 3312 -1 307 130 0 0 chr11 143129963 143130009 -5653463 + MARNA DNA Mariner 199 244 -342 229 26 26 26 chr11 143130606 143130645 -5652827 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 227 289 183 10 chr11 143130655 143130759 -5652713 - L2 LINE L2 -13 3300 3179 393 380 63 22 chr11 143131057 143131518 -5651954 - L2 LINE L2 -964 2350 1871 185 342 0 0 chr11 143131929 143132005 -5651467 - MIR SINE MIR -36 226 151 2253 107 0 3 chr11 143132080 143132380 -5651092 + AluSg SINE Alu 1 299 -11 356 244 0 0 chr11 143132409 143132487 -5650985 + L2 LINE L2 3234 3311 -2 1732 194 0 0 chr11 143133327 143133611 -5649861 + AluJo SINE Alu 1 284 -28 1284 73 12 0 chr11 143133992 143134156 -5649316 - AluY SINE Alu -102 209 44 225 314 106 29 chr11 143136324 143136531 -5646941 - L2 LINE L2 -465 2849 2627 1274 263 117 69 chr11 143136786 143137804 -5645668 + L2 LINE L2 2130 3196 -117 1268 187 229 3 chr11 143139000 143139284 -5644188 - MER7A DNA MER2_type 0 346 1 204 296 56 0 chr11 143139969 143140040 -5643432 - MIR SINE MIR -26 236 162 290 269 48 29 chr11 143140739 143140843 -5642629 + MIR3 SINE MIR 90 195 -13 249 289 21 0 chr11 143143165 143143262 -5640210 + L2 LINE L2 1810 1908 -1406 1807 218 113 89 chr11 143143262 143143901 -5639571 - MLT1E1 LTR MaLR 0 654 1 235 161 16 81 chr11 143144660 143144722 -5638750 + L2 LINE L2 3251 3308 -5 269 321 89 43 chr11 143145458 143145782 -5637690 - L2 LINE L2 -338 2976 2638 568 276 142 40 chr11 143146941 143147566 -5635906 + L1ME3A LINE L1 5236 5951 -213 414 0 0 0 chr11 143147731 143147777 -5635695 + (TG)n Simple_repeat Simple_repeat 2 47 0 23 0 0 0 chr11 143147816 143147839 -5635633 + AT_rich Low_complexity Low_complexity 1 23 0 317 287 0 19 chr11 143148876 143148984 -5634488 + MIR SINE MIR 78 183 -79 24 53 0 0 chr11 143149713 143149751 -5633721 + AT_rich Low_complexity Low_complexity 1 38 0 238 310 0 20 chr11 143150388 143150488 -5632984 + (CATATA)n Simple_repeat Simple_repeat 4 101 0 360 264 64 81 chr11 143150594 143150829 -5632643 - L2 LINE L2 -3 3310 3080 290 242 81 32 chr11 143152821 143152945 -5630527 - L2 LINE L2 -26 3287 3158 433 304 41 21 chr11 143152995 143153198 -5630274 - MIR SINE MIR -53 209 5 330 206 0 0 chr11 143153573 143153646 -5629826 + CT-rich Low_complexity Low_complexity 3 75 0 1907 97 63 60 chr11 143154467 143154766 -5628706 + AluSx SINE Alu 1 300 -12 1766 180 61 9 chr11 143156738 143157083 -5626389 + MLT1A1 LTR MaLR 3 365 0 246 279 0 0 chr11 143157105 143157166 -5626306 - MIR3 SINE MIR -35 173 113 887 126 0 15 chr11 143158177 143158304 -5625168 - AluSg/x SINE Alu -6 306 180 1728 117 0 0 chr11 143158304 143158535 -5624937 - AluSp SINE Alu -78 235 5 2274 184 19 9 chr11 143158863 143159291 -5624181 + MSTB LTR MaLR 1 426 0 227 306 0 0 chr11 143159382 143159444 -5624028 + (CA)n Simple_repeat Simple_repeat 2 63 0 191 36 36 0 chr11 143160228 143160256 -5623216 + (TAAAAA)n Simple_repeat Simple_repeat 1 29 0 256 263 20 99 chr11 143160550 143160702 -5622770 + MIR SINE MIR 48 187 -75 196 125 0 42 chr11 143160842 143160890 -5622582 + (GGAGAA)n Simple_repeat Simple_repeat 1 46 0 1451 217 89 27 chr11 143161280 143161727 -5621745 - MLT1D LTR MaLR 0 505 31 23 0 0 0 chr11 143162428 143162451 -5621021 + AT_rich Low_complexity Low_complexity 1 23 0 358 300 136 0 chr11 143164012 143164152 -5619320 + MLT1J LTR MaLR 109 267 -244 1777 141 88 16 chr11 143164239 143164559 -5618913 + MER61A LTR ERV1 1 343 0 920 309 50 31 chr11 143166581 143167002 -5616470 + LTR16A LTR ERVL 16 444 -6 372 297 50 22 chr11 143167373 143167682 -5615790 + L3 LINE CR1 669 1057 -520 2004 151 39 15 chr11 143167689 143168020 -5615452 - MER1B DNA MER1_type 0 339 1 269 289 13 0 chr11 143168050 143168126 -5615346 + L3 LINE CR1 1118 1194 -383 944 349 116 37 chr11 143168590 143169618 -5613854 + L3 LINE CR1 469 1577 0 249 280 13 28 chr11 143169644 143169825 -5613647 + L3 LINE CR1 1347 1567 -10 206 245 170 0 chr11 143169839 143169933 -5613539 + MIR SINE MIR 31 140 -68 505 323 8 0 chr11 143170038 143170171 -5613301 - MER58A DNA MER1_type 0 134 1 1010 226 0 35 chr11 143170180 143170406 -5613066 + MER20 DNA MER1_type 2 219 0 2416 76 20 0 chr11 143170719 143171021 -5612451 + AluSp SINE Alu 1 308 -5 234 321 94 0 chr11 143171152 143171258 -5612214 - MIR3 SINE MIR -41 167 52 3450 139 12 19 chr11 143171972 143172539 -5610933 + MER34B LTR ERV1 2 564 -1 259 237 101 59 chr11 143173033 143173202 -5610270 + L1ME3A LINE L1 5740 5915 -255 254 246 0 0 chr11 143173275 143173340 -5610132 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 1269 73 0 0 chr11 143173446 143173624 -5609848 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 838 224 57 0 chr11 143174230 143174422 -5609050 - MLT1E2 LTR MaLR 0 626 424 604 172 4 11 chr11 143374460 143374729 -5408743 + (TG)n Simple_repeat Simple_repeat 1 266 0 707 220 25 13 chr11 143374934 143375093 -5408379 + MLT1I LTR MaLR 20 180 -229 3354 96 8 8 chr11 143375096 143375574 -5407898 + L1MA8 LINE L1 5532 6009 -282 799 357 16 0 chr11 143375812 143376061 -5407411 - MIR SINE MIR -5 257 5 239 314 274 8 chr11 143376681 143377079 -5406393 + L2 LINE L2 2255 2758 -556 2379 77 0 32 chr11 143377254 143377566 -5405906 - AluSc SINE Alu -2 307 6 2144 154 0 0 chr11 143377876 143378206 -5405266 + HERVH LTR ERV1 4820 5149 -2564 1326 157 19 0 chr11 143378207 143378423 -5405049 + HERVH LTR ERV1 5600 5819 -1894 * 2470 94 52 13 chr11 143378416 143378800 -5404672 + HERVH LTR ERV1 7315 7713 0 2931 68 131 0 chr11 143378800 143379196 -5404276 + LTR7 LTR ERV1 1 448 -2 435 248 38 15 chr11 143379639 143379772 -5403700 - L1M4 LINE L1 -979 5167 5032 651 197 255 11 chr11 143379779 143380044 -5403428 + L1ME LINE L1 5204 5440 -726 188 0 74 0 chr11 143380088 143380115 -5403357 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1766 230 144 6 chr11 143380118 143380631 -5402841 - L1MD3 LINE L1 -11 7984 7401 212 190 17 35 chr11 143381005 143381063 -5402409 + T-rich Low_complexity Low_complexity 3 59 0 1373 172 0 9 chr11 143383104 143383325 -5400147 + AluJo SINE Alu 7 225 -87 843 104 11 44 chr11 143383371 143383553 -5399919 + (GGGAA)n Simple_repeat Simple_repeat 1 176 0 707 107 11 59 chr11 143383567 143383754 -5399718 + (GGGAA)n Simple_repeat Simple_repeat 3 180 0 2126 220 53 34 chr11 143383911 143384850 -5398622 - L1MDa LINE L1 -2224 4316 225 9885 113 23 99 chr11 143384857 143385798 -5397674 - Tigger1 DNA MER2_type 0 2418 1526 1006 158 0 0 chr11 143385798 143385944 -5397528 - AluSc SINE Alu -26 283 138 9885 113 23 99 chr11 143385944 143386680 -5396792 - Tigger1 DNA MER2_type -892 1526 735 900 194 54 0 chr11 143386675 143386687 -5396785 - Tigger1 DNA MER2_type -2222 196 186 * 300 53 0 0 chr11 143386687 143386725 -5396747 + (TAA)n Simple_repeat Simple_repeat 2 39 0 900 194 54 0 chr11 143386725 143386898 -5396574 - Tigger1 DNA MER2_type -2232 186 1 588 229 28 14 chr11 143386898 143387042 -5396430 - L1MDa LINE L1 -6321 219 74 1035 183 71 0 chr11 143387143 143387340 -5396132 - MER2 DNA MER2_type -134 211 1 403 182 13 26 chr11 143387340 143387417 -5396055 - L1MDa LINE L1 -6464 76 1 * 466 210 30 85 chr11 143387396 143387665 -5395807 - L1MDa LINE L1 -3890 2650 2433 1998 274 58 34 chr11 143387667 143388541 -5394931 - L1MDa LINE L1 -4363 2033 1139 643 222 117 19 chr11 143389573 143389735 -5393737 - MER5B DNA MER1_type 0 178 1 1071 267 122 17 chr11 143390710 143391246 -5392226 + L1ME4a LINE L1 5472 6052 -69 21 0 0 0 chr11 143391291 143391312 -5392160 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr11 143392380 143392401 -5391071 + AT_rich Low_complexity Low_complexity 1 21 0 875 194 82 5 chr11 143393765 143393961 -5389511 + MER20 DNA MER1_type 1 211 -8 587 246 81 38 chr11 143394732 143395154 -5388318 - MLT1D LTR MaLR -7 498 1 1064 259 0 0 chr11 143395166 143395398 -5388074 + MIR SINE MIR 31 262 0 3745 199 23 39 chr11 143395552 143396675 -5386797 + L1MB3 LINE L1 4504 5603 -580 928 161 28 6 chr11 143396678 143396858 -5386614 + L1MB3 LINE L1 6000 6183 0 33 73 0 0 chr11 143397042 143397110 -5386362 + AT_rich Low_complexity Low_complexity 1 68 0 500 272 52 26 chr11 143397608 143397799 -5385673 + MIR SINE MIR 48 243 -19 2626 145 67 0 chr11 143398652 143399053 -5384419 - MSTC LTR MaLR 0 428 1 839 275 130 43 chr11 143399558 143399995 -5383477 - L2 LINE L2 0 3313 2839 631 299 49 63 chr11 143400276 143400707 -5382765 + MLT1K LTR MaLR 164 588 0 346 235 232 11 chr11 143400716 143400912 -5382560 + MIR SINE MIR 21 251 -11 196 324 28 19 chr11 143400926 143401034 -5382438 - MIR SINE MIR -106 156 48 257 364 8 8 chr11 143401850 143401968 -5381504 + L2 LINE L2 2718 2835 -479 671 271 120 49 chr11 143402536 143402886 -5380586 + L2 LINE L2 2600 2974 -340 214 236 14 42 chr11 143403447 143403519 -5379953 + L2 LINE L2 3142 3211 -61 348 286 8 60 chr11 143406172 143406305 -5377167 - MIR3 SINE MIR -6 202 77 22 0 0 0 chr11 143406326 143406348 -5377124 + AT_rich Low_complexity Low_complexity 1 22 0 399 259 114 36 chr11 143406484 143406650 -5376822 - HAL1 LINE L1 -585 1922 1744 1245 285 86 35 chr11 143406661 143407306 -5376166 - HAL1 LINE L1 -969 1538 851 2252 201 15 8 chr11 143407306 143407699 -5375773 - MSTD LTR MaLR 0 396 1 1245 285 86 35 chr11 143407699 143407773 -5375699 - HAL1 LINE L1 -1656 851 782 503 298 91 1 chr11 143407785 143408114 -5375358 + MLT1I LTR MaLR 3 407 -2 1246 156 11 3 chr11 143408280 143408597 -5374875 - MSTB LTR MaLR -12 420 7 1412 207 240 16 chr11 143408619 143409006 -5374466 + MLT2B1 LTR ERVL 1 493 -27 191 35 0 35 chr11 143409006 143409035 -5374437 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1412 207 240 16 chr11 143409035 143409072 -5374400 + MLT2B1 LTR ERVL 493 520 0 4411 47 14 0 chr11 143409561 143410074 -5373398 + L1PA5 LINE L1 5623 6142 -12 704 204 6 2 chr11 143410712 143411193 -5372279 + (TG)n Simple_repeat Simple_repeat 1 483 0 4132 251 63 12 chr11 143411459 143412790 -5370682 - L1M4 LINE L1 -2455 3691 2288 2003 199 105 38 chr11 143412790 143413168 -5370304 + MER68 LTR ERV1 1 425 -137 2123 103 0 47 chr11 143413168 143413468 -5370004 - AluSg1 SINE Alu -19 290 5 2003 199 105 38 chr11 143413468 143413612 -5369860 + MER68 LTR ERV1 425 558 -4 4132 251 63 12 chr11 143413612 143413637 -5369835 - L1M4 LINE L1 -3858 2288 2266 10089 212 61 38 chr11 143413668 143413771 -5369701 - L1MD1 LINE L1 -2 6634 6535 2366 134 132 5 chr11 143413771 143414151 -5369321 - MSTA LTR MaLR 0 428 1 10089 212 61 38 chr11 143414151 143416294 -5367178 - L1MD1 LINE L1 -101 6535 4442 3544 154 31 18 chr11 143416294 143416911 -5366561 - L1MC1 LINE L1 0 6333 5709 10089 212 61 38 chr11 143416911 143418880 -5364592 - L1MD1 LINE L1 -2194 4442 2286 528 138 0 11 chr11 143418880 143418974 -5364498 - L1MA4 LINE L1 -5 6295 6203 10089 212 61 38 chr11 143418974 143419716 -5363756 - L1MD1 LINE L1 -4350 2286 1562 875 165 19 62 chr11 143419689 143419765 -5363707 - L1MD1 LINE L1 -5212 1331 1253 * 1803 181 40 8 chr11 143419765 143420119 -5363353 - L1MA4 LINE L1 -1 6299 5935 875 165 19 62 chr11 143420119 143420292 -5363180 - L1MD1 LINE L1 -5290 1253 1066 10790 25 1 2 chr11 143420298 143422267 -5361205 - L1PA3 LINE L1 -4 6151 4183 422 287 89 55 chr11 143422832 143423034 -5360438 + MIR SINE MIR 5 213 -49 307 255 78 69 chr11 143423531 143423633 -5359839 + MER5B DNA MER1_type 72 174 -4 313 309 58 22 chr11 143424799 143424938 -5358534 + MER5B DNA MER1_type 35 178 0 274 282 127 49 chr11 143425673 143425815 -5357657 + L2 LINE L2 3117 3269 -3 265 378 9 0 chr11 143426358 143426469 -5357003 + MIR SINE MIR 10 121 -141 1043 244 97 25 chr11 143426807 143427242 -5356230 - MLT1C LTR MaLR 0 467 2 266 287 266 0 chr11 143427424 143427567 -5355905 + MIR SINE MIR 70 250 -12 6374 102 234 88 chr11 143427605 143429085 -5354387 - pTR5 LTR ERV1 0 2438 743 825 89 0 68 chr11 143430253 143430554 -5352918 + (GGGAA)n Simple_repeat Simple_repeat 1 280 0 215 348 22 0 chr11 143430790 143430879 -5352593 - MIR SINE MIR -108 154 64 731 251 112 0 chr11 143430915 143431130 -5352342 + MIR SINE MIR 24 262 0 5088 282 124 22 chr11 143431136 143434033 -5349439 + L2 LINE L2 116 3311 -2 357 24 0 0 chr11 143434090 143434132 -5349340 + (CA)n Simple_repeat Simple_repeat 2 43 0 198 316 165 24 chr11 143434340 143434679 -5348793 + L2 LINE L2 2836 3222 -91 247 351 119 20 chr11 143435564 143435715 -5347757 + MIR3 SINE MIR 19 184 -24 282 305 21 50 chr11 143436489 143436630 -5346842 + MIR SINE MIR 17 153 -55 208 320 70 10 chr11 143436664 143436764 -5346708 - MER5A DNA MER1_type -27 162 57 207 277 154 39 chr11 143436668 143436798 -5346674 + MER5A DNA MER1_type 43 187 -2 * 223 250 42 14 chr11 143439080 143439152 -5344320 + MIR SINE MIR 93 166 -96 196 385 0 0 chr11 143439708 143439773 -5343699 - MIR3 SINE MIR 0 208 144 394 289 39 106 chr11 143439951 143440235 -5343237 - L2 LINE L2 0 3272 3008 1473 205 57 23 chr11 143440411 143440762 -5342710 - MLT1A1 LTR MaLR -2 363 1 189 292 21 0 chr11 143441209 143441257 -5342215 - L2 LINE L2 -216 3056 3008 1522 180 29 73 chr11 143441411 143441794 -5341678 + L1MB5 LINE L1 5767 6132 -42 314 369 39 8 chr11 143441930 143442060 -5341412 + L2 LINE L2 3117 3250 -22 252 0 0 0 chr11 143442070 143442098 -5341374 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 274 272 26 79 chr11 143442848 143442962 -5340510 + MIR3 SINE MIR 94 201 -7 244 256 122 0 chr11 143444102 143444192 -5339280 + MIR SINE MIR 151 251 -11 207 250 0 0 chr11 143445126 143445178 -5338294 + C-rich Low_complexity Low_complexity 5 56 0 350 364 30 0 chr11 143446444 143446609 -5336863 + L3b LINE CR1 1103 1272 -311 198 409 44 18 chr11 143447115 143447340 -5336132 - L2 LINE L2 -856 2458 2228 420 20 0 0 chr11 143447341 143447390 -5336082 + (TA)n Simple_repeat Simple_repeat 1 49 0 33025 41 33 1 chr11 143447547 143451577 -5331895 + L1P LINE L1 3 4160 -1986 1396 183 44 15 chr11 143451683 143451957 -5331515 + AluJo SINE Alu 1 282 -30 246 261 108 62 chr11 143453393 143453523 -5329949 - MIR SINE MIR -118 144 9 501 298 130 93 chr11 143454214 143454653 -5328819 + MLT1K LTR MaLR 55 509 -79 436 208 0 58 chr11 143454697 143454817 -5328655 + MIR SINE MIR 149 261 -1 492 259 28 142 chr11 143455074 143455356 -5328116 + MIR SINE MIR 8 257 -5 248 351 38 0 chr11 143455573 143455704 -5327768 - MIR3 SINE MIR -64 144 9 181 186 0 23 chr11 143455783 143455826 -5327646 - L2 LINE L2 -1 3312 3271 741 178 0 0 chr11 143456072 143456229 -5327243 + (TGGA)n Simple_repeat Simple_repeat 4 160 0 306 232 12 12 chr11 143456340 143456422 -5327050 - MIR3 SINE MIR -5 203 122 2470 24 3 3 chr11 143456996 143457288 -5326184 - L1PA4 LINE L1 0 6155 5864 1220 29 0 0 chr11 143457288 143457428 -5326044 + L1PA5 LINE L1 5762 5901 -253 277 243 84 56 chr11 143459636 143459743 -5323729 + L2 LINE L2 3202 3311 -2 1550 172 26 36 chr11 143461693 143461904 -5321568 - MLT1A1 LTR MaLR -5 360 151 2233 93 10 0 chr11 143461904 143462205 -5321267 - AluSq SINE Alu -9 304 1 1550 172 26 36 chr11 143462205 143462301 -5321171 - MLT1A1 LTR MaLR -214 151 56 1039 212 75 86 chr11 143462889 143463248 -5320224 - MLT2D LTR ERVL -40 374 20 249 350 25 0 chr11 143463438 143463518 -5319954 - MIR SINE MIR -142 120 39 193 264 46 115 chr11 143464604 143464691 -5318781 + MIR SINE MIR 3 83 -179 235 283 174 0 chr11 143465150 143465242 -5318230 + MIR SINE MIR 58 165 -97 275 0 29 0 chr11 143466321 143466356 -5317116 + (TG)n Simple_repeat Simple_repeat 2 37 0 9424 212 66 28 chr11 143466360 143469177 -5314295 - L1MB7 LINE L1 -8 6176 3190 2709 10 0 0 chr11 143469177 143469480 -5313992 + AluYa5 SINE Alu 2 304 -7 9424 212 66 28 chr11 143469480 143470247 -5313225 - L1MB7 LINE L1 -2994 3190 2454 591 325 0 64 chr11 143470475 143470678 -5312794 - MIR3 SINE MIR -13 195 6 189 121 0 0 chr11 143470820 143470853 -5312619 + (TATATG)n Simple_repeat Simple_repeat 6 38 0 204 241 51 25 chr11 143470876 143470955 -5312517 - MER5A DNA MER1_type -77 112 32 1076 249 4 0 chr11 143472066 143472307 -5311165 - MER58 DNA MER1_type -99 242 1 26 0 0 0 chr11 143472745 143472771 -5310701 + AT_rich Low_complexity Low_complexity 1 26 0 687 240 12 61 chr11 143472772 143473018 -5310454 - L1MA9 LINE L1 -39 6273 6040 306 239 54 83 chr11 143473103 143473308 -5310164 - L1MC4a LINE L1 -1911 5897 5699 263 344 16 16 chr11 143473327 143473449 -5310023 - L1MC4a LINE L1 -2178 5630 5509 225 0 0 0 chr11 143473457 143473482 -5309990 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 353 280 68 56 chr11 143473511 143473843 -5309629 - L1MC4a LINE L1 -742 5422 5088 462 300 19 57 chr11 143473850 143474060 -5309412 + L1M4 LINE L1 5140 5341 -805 1426 273 117 23 chr11 143474168 143474810 -5308662 - L1MCc LINE L1 -4887 1536 835 557 307 94 0 chr11 143476698 143476942 -5306530 + L1M4 LINE L1 2355 2621 -3525 1318 215 61 48 chr11 143477188 143477529 -5305943 - L1MC4a LINE L1 -1153 4993 4645 2192 109 3 16 chr11 143477529 143477833 -5305639 + AluSx SINE Alu 1 300 -12 1318 215 61 48 chr11 143477833 143477867 -5305605 - L1MC4a LINE L1 -1501 4645 4613 196 348 71 54 chr11 143477963 143478259 -5305213 - L3 LINE CR1 -665 912 612 272 239 42 132 chr11 143479206 143479373 -5304099 + MLT1K LTR MaLR 20 171 -417 715 160 0 0 chr11 143481794 143481900 -5301572 + FLAM_C SINE Alu 2 107 -36 220 229 0 0 chr11 143481960 143482008 -5301464 + A-rich Low_complexity Low_complexity 1 48 0 240 111 0 0 chr11 143482030 143482066 -5301406 + (A)n Simple_repeat Simple_repeat 1 36 0 209 302 0 16 chr11 143482524 143482587 -5300885 + GA-rich Low_complexity Low_complexity 3 64 0 1793 178 8 65 chr11 143483463 143483846 -5299626 + MLT1A1 LTR MaLR 1 361 -4 269 271 114 7 chr11 143484158 143484298 -5299174 + MIR SINE MIR 95 249 -13 350 270 14 34 chr11 143484958 143485106 -5298366 + GA-rich Low_complexity Low_complexity 2 146 0 274 156 31 0 chr11 143485126 143485190 -5298282 + GA-rich Low_complexity Low_complexity 1 66 0 509 70 127 0 chr11 143485967 143486038 -5297434 + MADE1 DNA Mariner 1 80 0 206 234 21 0 chr11 143486626 143486673 -5296799 + GA-rich Low_complexity Low_complexity 5 52 0 3713 250 22 34 chr11 143487774 143488345 -5295127 - MSTD-int LTR MaLR -778 957 401 1935 133 4 4 chr11 143488345 143488616 -5294856 + AluJb SINE Alu 3 273 -39 3713 250 22 34 chr11 143488616 143489012 -5294460 - MSTD-int LTR MaLR -1334 401 2 1608 217 90 6 chr11 143489019 143489365 -5294107 - MSTD LTR MaLR -5 391 17 1829 159 53 58 chr11 143489374 143489771 -5293701 + MSTD LTR MaLR 1 395 -1 1473 197 40 33 chr11 143490121 143490420 -5293052 - AluJb SINE Alu -10 302 2 221 56 0 28 chr11 143490691 143490727 -5292745 + (GA)n Simple_repeat Simple_repeat 2 36 0 313 300 35 66 chr11 143490919 143491146 -5292326 + HAL1 LINE L1 1 220 -2287 330 195 0 0 chr11 143491149 143491231 -5292241 + (TG)n Simple_repeat Simple_repeat 1 82 0 429 272 83 43 chr11 143491309 143491675 -5291797 + HAL1 LINE L1 350 775 -1732 666 332 8 16 chr11 143491676 143491926 -5291546 - MLT1I LTR MaLR -2 407 160 487 136 0 0 chr11 143491940 143492021 -5291451 - L1MA8 LINE L1 -1 6290 6210 461 306 133 32 chr11 143492122 143492580 -5290892 + L1M1 LINE L1 5283 5782 -520 291 299 123 49 chr11 143493113 143493984 -5289488 - L1M4 LINE L1 -1337 4809 3875 273 255 41 10 chr11 143493988 143494086 -5289386 - MIR SINE MIR -74 188 88 529 310 0 0 chr11 143495336 143495510 -5287962 - MIR SINE MIR -25 237 64 656 256 89 5 chr11 143495529 143495732 -5287740 - MIR SINE MIR -12 250 31 2403 87 152 8 chr11 143495936 143495982 -5287490 - MLT2A1 LTR ERVL 0 444 406 387 0 0 0 chr11 143495982 143496025 -5287447 + (TG)n Simple_repeat Simple_repeat 2 44 0 2403 87 152 8 chr11 143496025 143496359 -5287113 - MLT2A1 LTR ERVL -38 406 9 185 258 61 68 chr11 143500029 143500161 -5283311 + L2 LINE L2 2703 2833 -481 363 340 64 0 chr11 143500244 143500400 -5283072 - L2 LINE L2 -3 3269 3104 438 20 0 0 chr11 143501044 143501095 -5282377 + (TG)n Simple_repeat Simple_repeat 1 51 0 288 102 0 0 chr11 143501095 143501144 -5282328 + (GA)n Simple_repeat Simple_repeat 2 50 0 2192 103 0 10 chr11 143501223 143501515 -5281957 + AluSc SINE Alu 2 290 -19 905 318 80 11 chr11 143501745 143502208 -5281264 - L2 LINE L2 -1027 2287 1793 7751 20 10 0 chr11 143502744 143503697 -5279775 - L1PA4 LINE L1 0 6155 5200 796 170 0 21 chr11 143504732 143504873 -5278599 + MER45A DNA AcHobo 40 177 -1 2728 52 0 0 chr11 143506192 143506502 -5276970 + AluY SINE Alu 2 311 0 790 268 34 0 chr11 143507423 143507632 -5275840 + MIR SINE MIR 21 236 -26 465 302 131 50 chr11 143508030 143508463 -5275009 + L1ME3A LINE L1 4157 4553 -1593 1757 164 0 17 chr11 143508463 143508755 -5274717 - AluJb SINE Alu -23 289 3 465 302 131 50 chr11 143508755 143509467 -5274005 + L1ME3A LINE L1 4553 5395 -751 413 324 144 22 chr11 143509515 143509889 -5273583 + L1ME3A LINE L1 5469 5886 -284 2324 88 0 0 chr11 143510896 143511225 -5272247 + AluSc SINE Alu 1 329 0 189 74 0 0 chr11 143511513 143511540 -5271932 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 186 213 85 0 chr11 143511545 143511592 -5271880 - L2 LINE L2 -2 3270 3220 239 288 12 0 chr11 143511958 143512038 -5271434 - MIR SINE MIR -26 236 156 355 306 0 0 chr11 143512179 143512277 -5271195 - MIR SINE MIR -106 156 59 240 342 178 0 chr11 143513780 143513932 -5269540 + L2 LINE L2 2561 2739 -575 241 239 30 0 chr11 143513956 143514023 -5269449 + MIR SINE MIR 84 152 -110 300 324 104 42 chr11 143514091 143514350 -5269122 + L2 LINE L2 2963 3237 -35 517 188 119 19 chr11 143514731 143514891 -5268581 + MER5B DNA MER1_type 3 178 0 273 233 14 0 chr11 143516977 143517050 -5266422 + (TCTCTG)n Simple_repeat Simple_repeat 5 78 0 241 289 168 48 chr11 143517459 143517667 -5265805 - MIR SINE MIR -18 244 12 636 248 13 26 chr11 143517698 143517924 -5265548 - MIR SINE MIR -37 225 3 986 157 18 0 chr11 143518351 143518695 -5264777 + (TCCA)n Simple_repeat Simple_repeat 1 350 0 409 231 0 83 chr11 143519521 143519690 -5263782 - L2 LINE L2 -31 3282 3128 1409 166 47 119 chr11 143519691 143520094 -5263378 - MLT1A2 LTR MaLR 0 374 1 276 274 18 26 chr11 143521256 143521369 -5262103 + MER5A DNA MER1_type 50 161 -28 278 296 56 14 chr11 143521384 143521526 -5261946 - MER5B DNA MER1_type -2 176 29 1101 65 0 0 chr11 143523772 143523910 -5259562 + AluSg/x SINE Alu 175 312 0 1922 166 46 64 chr11 143525149 143525535 -5257937 + L1PA16 LINE L1 5725 6104 -62 1732 139 38 0 chr11 143525535 143525802 -5257670 + AluSq SINE Alu 34 310 -3 1922 166 46 64 chr11 143525802 143525850 -5257622 + L1PA16 LINE L1 6104 6151 -15 213 156 22 22 chr11 143526235 143526280 -5257192 + CT-rich Low_complexity Low_complexity 3 47 0 495 242 118 24 chr11 143526629 143526840 -5256632 - LTR16A LTR ERVL -13 437 207 334 251 42 93 chr11 143528036 143528251 -5255221 + MIR SINE MIR 3 206 -56 2059 116 61 3 chr11 143528563 143528857 -5254615 - AluSp SINE Alu -2 311 1 2291 78 7 42 chr11 143529395 143529703 -5253769 + AluY SINE Alu 6 302 -9 7911 20 0 0 chr11 143530129 143531306 -5252166 - L1PA2 LINE L1 -3 6152 4976 705 217 100 21 chr11 143631432 143631672 -5151800 + L1ME3A LINE L1 5686 5944 -226 369 283 64 58 chr11 143631759 143631932 -5151540 + L1ME3A LINE L1 5968 6141 -29 2325 213 31 53 chr11 143632669 143633307 -5150165 - MLT1E3 LTR MaLR 0 624 1 362 228 63 13 chr11 143633581 143633660 -5149812 - L2 LINE L2 0 3313 3231 1011 269 141 57 chr11 143634074 143634895 -5148577 - L2 LINE L2 0 3313 2396 236 336 61 15 chr11 143634993 143635124 -5148348 - L2 LINE L2 -836 2478 2342 366 244 104 24 chr11 143635356 143635520 -5147952 + LTR16A1 LTR ERVL 174 350 -107 4178 150 86 14 chr11 143635527 143636309 -5147163 + Ricksha DNA DNA 8 845 -1201 510 108 0 0 chr11 143636309 143636392 -5147080 + (TC)n Simple_repeat Simple_repeat 1 83 0 612 140 20 0 chr11 143636407 143636507 -5146965 + Ricksha DNA DNA 847 948 -1098 345 230 130 0 chr11 143636507 143636607 -5146865 + LTR16A1 LTR ERVL 341 453 -4 488 211 26 18 chr11 143636698 143636812 -5146660 - MIR SINE MIR 0 262 148 962 248 82 19 chr11 143636818 143637239 -5146233 - MLT1C LTR MaLR 0 467 16 467 327 77 32 chr11 143637260 143637564 -5145908 + L1MEc LINE L1 2186 2457 -3758 781 302 67 18 chr11 143637570 143637898 -5145574 - MLT1I LTR MaLR -1 408 65 345 338 39 13 chr11 143637950 143638104 -5145368 + L1MEc LINE L1 2460 2617 -3598 1841 157 15 51 chr11 143638140 143638534 -5144938 + L1MB1 LINE L1 5760 6139 -50 256 265 15 0 chr11 143638596 143638664 -5144808 - MLT2B3 LTR ERVL -471 83 15 548 200 11 69 chr11 143638719 143638894 -5144578 + L1MA10 LINE L1 6169 6333 -1 363 338 130 10 chr11 143638900 143639107 -5144365 + L1MEc LINE L1 2673 2904 -3311 249 33 0 0 chr11 143639151 143639181 -5144291 + (T)n Simple_repeat Simple_repeat 1 30 0 23 0 0 0 chr11 143639202 143639225 -5144247 + GC_rich Low_complexity Low_complexity 1 23 0 232 275 66 22 chr11 143639503 143639594 -5143878 + L2 LINE L2 3177 3271 -1 461 304 24 0 chr11 143639941 143640066 -5143406 + MIR SINE MIR 2 129 -133 242 310 108 13 chr11 143641897 143642082 -5141390 + MIR SINE MIR 20 226 -36 190 284 99 12 chr11 143642153 143642234 -5141238 + MIR SINE MIR 94 181 -81 287 160 20 0 chr11 143642428 143642478 -5140994 + L2 LINE L2 3262 3312 -1 299 273 182 26 chr11 143642484 143642638 -5140834 + MIR SINE MIR 76 253 -9 299 202 11 22 chr11 143643645 143643734 -5139738 + CT-rich Low_complexity Low_complexity 2 89 0 532 162 0 15 chr11 143644052 143644188 -5139284 + CT-rich Low_complexity Low_complexity 2 135 0 185 300 0 71 chr11 143644626 143644696 -5138776 + MIR SINE MIR 59 123 -85 797 290 94 20 chr11 143644746 143645149 -5138323 - L2 LINE L2 -46 3267 2835 211 273 104 52 chr11 143645358 143645435 -5138037 + MIR SINE MIR 111 191 -71 346 266 0 11 chr11 143645586 143645680 -5137792 - MIR SINE MIR -60 202 110 21 0 0 0 chr11 143647686 143647707 -5135765 + GC_rich Low_complexity Low_complexity 1 21 0 223 246 0 18 chr11 143647809 143647866 -5135606 + MIR SINE MIR 100 155 -107 344 103 17 0 chr11 143648168 143648226 -5135246 + (GGAA)n Simple_repeat Simple_repeat 2 60 0 289 287 65 9 chr11 143648658 143648766 -5134706 + MIR SINE MIR 36 149 -59 188 299 104 13 chr11 143649317 143649394 -5134078 - MIR SINE MIR -92 116 33 1236 144 24 0 chr11 143649468 143649676 -5133796 + MER2 DNA MER2_type 1 213 -132 317 277 0 0 chr11 143649715 143649780 -5133692 + MER2 DNA MER2_type 280 344 -1 317 341 103 38 chr11 143649810 143650177 -5133295 - MLT1J2 LTR MaLR -44 406 16 2316 184 15 19 chr11 143650873 143651336 -5132136 - MLT1C LTR MaLR -2 465 5 202 229 0 0 chr11 143651538 143651573 -5131899 - L2 LINE L2 -18 3254 3220 490 296 96 47 chr11 143651650 143651951 -5131521 + L2 LINE L2 2953 3268 -45 595 267 45 30 chr11 143652101 143652303 -5131169 + MIR SINE MIR 52 256 -6 1447 232 125 22 chr11 143654713 143655170 -5128302 - MLT1D LTR MaLR 0 505 2 539 224 168 6 chr11 143655338 143655499 -5127973 + MLT1J2 LTR MaLR 13 199 -251 912 248 125 26 chr11 143656079 143656549 -5126923 - MLT1G LTR MaLR 0 590 1 251 301 85 39 chr11 143656949 143657102 -5126370 + MLT1J2 LTR MaLR 224 383 -67 507 239 189 29 chr11 143657643 143657881 -5125591 + L1ME4a LINE L1 5845 6120 -1 5402 114 13 5 chr11 143657892 143658734 -5124738 - L1PA16 LINE L1 -16 6150 5302 1283 195 11 4 chr11 143658751 143659018 -5124454 - AluSg SINE Alu -4 306 38 260 336 112 22 chr11 143660666 143660800 -5122672 - MIR SINE MIR -49 159 14 181 368 59 0 chr11 143662501 143662569 -5120903 - L2 LINE L2 -63 3209 3138 276 254 32 0 chr11 143662612 143662675 -5120797 + L3b LINE CR1 1517 1581 -2 243 323 157 10 chr11 143662997 143663195 -5120277 - L2 LINE L2 -400 2914 2688 * 251 290 71 49 chr11 143663176 143663359 -5120113 + L2 LINE L2 3016 3202 -111 238 316 10 0 chr11 143664639 143664737 -5118735 - L1MC4 LINE L1 -5 8037 7939 994 289 76 47 chr11 143664869 143665003 -5118469 - L1ME3A LINE L1 -209 5944 5815 2399 95 0 10 chr11 143665003 143665307 -5118165 - AluSx SINE Alu -11 301 1 994 289 76 47 chr11 143665307 143667031 -5116441 - L1ME3A LINE L1 -338 5815 2929 2485 55 3 0 chr11 143667104 143667395 -5116077 + AluY SINE Alu 1 292 -19 246 89 36 18 chr11 143667496 143667552 -5115920 + (TG)n Simple_repeat Simple_repeat 1 57 0 692 36 83 12 chr11 143667565 143667733 -5115739 + (TG)n Simple_repeat Simple_repeat 1 180 0 207 271 0 0 chr11 143672095 143672165 -5111307 + (TG)n Simple_repeat Simple_repeat 1 70 0 528 334 41 57 chr11 143673233 143673550 -5109922 - L2 LINE L2 -1 3312 3001 235 228 0 35 chr11 143674712 143674769 -5108703 + CT-rich Low_complexity Low_complexity 1 55 0 2550 42 0 23 chr11 143675498 143675807 -5107665 + AluY SINE Alu 1 302 -9 1160 293 155 27 chr11 143676711 143677575 -5105897 - L2 LINE L2 -199 3114 2144 303 236 181 16 chr11 143677603 143677730 -5105742 - L2 LINE L2 -1408 1906 1759 802 284 84 54 chr11 143677814 143678240 -5105232 + LTR16A1 LTR ERVL 18 456 -1 1751 328 51 38 chr11 143678256 143679544 -5103928 + HERV16 LTR ERVL 37 1341 -3655 279 317 92 18 chr11 143679732 143679896 -5103576 + L1M4 LINE L1 4182 4357 -1789 522 229 139 18 chr11 143680238 143680404 -5103068 - L1ME3A LINE L1 -5918 201 16 799 291 107 9 chr11 143682407 143682826 -5100646 - LTR33 LTR ERVL -61 460 1 346 315 239 20 chr11 143683105 143683461 -5100011 + MLT1H LTR MaLR 13 446 -103 296 258 44 33 chr11 143683627 143683809 -5099663 + L1M4 LINE L1 4982 5165 -981 26667 122 15 76 chr11 143683809 143687186 -5096286 + L1PA3 LINE L1 3 2989 -3157 22039 26 0 1 chr11 143687186 143690441 -5093031 + L1PA3 LINE L1 2923 6176 0 26667 122 15 76 chr11 143690441 143691978 -5091494 + L1PA3 LINE L1 2989 4618 -1528 479 231 112 30 chr11 143691979 143692113 -5091359 - MLT1F LTR MaLR -258 284 140 198 0 0 0 chr11 143692116 143692138 -5091334 + (CA)n Simple_repeat Simple_repeat 2 23 0 1886 155 53 0 chr11 143692138 143692461 -5091011 - MER2 DNA MER2_type -5 340 1 3153 251 71 38 chr11 143692472 143693053 -5090419 + L1M4 LINE L1 3792 4353 -1793 1610 181 29 0 chr11 143693053 143693329 -5090143 + AluJo SINE Alu 1 284 -28 309 26 0 0 chr11 143693329 143693367 -5090105 + (CA)n Simple_repeat Simple_repeat 2 39 0 3153 251 71 38 chr11 143693367 143694100 -5089372 + L1M4 LINE L1 4352 5150 -996 12155 169 15 12 chr11 143694104 143696170 -5087302 - ERVL-C1 LTR ERVL -538 5226 3154 8548 234 34 14 chr11 143696162 143697497 -5085975 - ERVL-C1 LTR ERVL -3141 2623 1116 * 2161 133 45 30 chr11 143697497 143697829 -5085643 - MER1B DNA MER1_type 0 337 1 8548 234 34 14 chr11 143697829 143698451 -5085021 - ERVL-C1 LTR ERVL -4648 1116 508 1812 220 6 11 chr11 143698465 143698824 -5084648 + MLT1A1 LTR MaLR 1 357 -8 1475 244 59 18 chr11 143698832 143699106 -5084366 - ERVL-C1 LTR ERVL -5224 540 279 2001 162 38 29 chr11 143699106 143699385 -5084087 - MER7A DNA MER2_type -2692 346 64 1624 183 56 0 chr11 143699385 143699499 -5083973 + AluJo SINE Alu 1 107 -205 183 42 0 0 chr11 143699499 143699523 -5083949 + (CAA)n Simple_repeat Simple_repeat 1 24 0 1624 183 56 0 chr11 143699523 143699692 -5083780 + AluJo SINE Alu 107 300 -12 2001 162 38 29 chr11 143699692 143699757 -5083715 - MER7A DNA MER2_type -2974 64 1 1475 244 59 18 chr11 143699757 143699962 -5083510 - ERVL-C1 LTR ERVL -5485 279 4 1638 208 21 21 chr11 143700149 143700481 -5082991 - MLT2C1 LTR ERVL -40 357 26 822 304 26 20 chr11 143700501 143700853 -5082619 + L1MEc LINE L1 1465 1818 -4578 * 8463 216 30 40 chr11 143700836 143702402 -5081070 + L1MEc LINE L1 2627 4207 -2008 1903 145 0 0 chr11 143702402 143702722 -5080750 + AluSx SINE Alu 1 320 0 8463 216 30 40 chr11 143702722 143703075 -5080397 + L1MEc LINE L1 4207 4524 -1691 2786 141 21 2 chr11 143703075 143703495 -5079977 + MSTA LTR MaLR 1 428 0 8463 216 30 40 chr11 143703495 143703839 -5079633 + L1MEc LINE L1 4524 4870 -1345 1798 122 11 19 chr11 143705525 143705796 -5077676 - AluSq SINE Alu -44 269 1 4391 200 15 44 chr11 143705996 143706849 -5076623 + L1MB3 LINE L1 4852 5648 -604 1829 143 0 28 chr11 143706849 143707135 -5076337 + AluJo SINE Alu 3 280 -32 4391 200 15 44 chr11 143707135 143707722 -5075750 + L1MB3 LINE L1 5648 6250 -2 2381 250 68 20 chr11 143707784 143708860 -5074612 + L1MEc LINE L1 1868 2941 -3274 475 206 53 38 chr11 143708910 143709041 -5074431 + L1M4 LINE L1 4982 5114 -1032 3484 157 78 9 chr11 143709068 143709700 -5073772 + MER44D DNA MER2_type 59 605 0 1036 242 77 48 chr11 143709701 143710205 -5073267 + L1MEc LINE L1 2943 3461 -2754 * 2360 210 82 35 chr11 143710204 143710943 -5072529 + L1MB7 LINE L1 4568 5341 -805 341 182 45 10 chr11 143710956 143711248 -5072224 + (TA)n Simple_repeat Simple_repeat 1 302 0 711 216 87 14 chr11 143711292 143711500 -5071972 + L1MB7 LINE L1 5378 5600 -566 * 6987 190 43 24 chr11 143711494 143714077 -5069395 + L1MB7 LINE L1 3610 6244 -9 258 184 154 39 chr11 143714079 143714195 -5069277 + L1MB7 LINE L1 5590 5712 -459 * 15508 191 37 21 chr11 143714194 143716190 -5067282 + L1PB1 LINE L1 6 1970 -4897 1943 140 10 13 chr11 143716190 143716326 -5067146 + AluSx SINE Alu 1 136 -176 233 57 29 0 chr11 143716326 143716361 -5067111 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1943 140 10 13 chr11 143716361 143716531 -5066941 + AluSx SINE Alu 136 306 -6 15508 191 37 21 chr11 143716531 143721120 -5062352 + L1PB1 LINE L1 1970 6866 -1 1711 199 61 42 chr11 143721144 143721617 -5061855 + L1MB7 LINE L1 5691 6172 -12 1447 272 27 9 chr11 143721621 143722212 -5061260 + L1MC4a LINE L1 5152 5750 -412 272 257 119 10 chr11 143722215 143722260 -5061212 + L1ME3 LINE L1 6037 6076 -86 393 22 0 0 chr11 143722260 143722306 -5061166 + (TG)n Simple_repeat Simple_repeat 2 47 0 272 257 119 10 chr11 143722306 143722361 -5061111 + L1ME3 LINE L1 6076 6148 -14 270 252 183 43 chr11 143722372 143722602 -5060870 + L1MC4a LINE L1 5939 6200 -1608 260 170 19 19 chr11 143722658 143722711 -5060761 + MLT1J1 LTR MaLR 67 119 -327 261 325 56 0 chr11 143723096 143723222 -5060250 - MIR3 SINE MIR -14 194 62 2216 101 56 0 chr11 143723223 143723753 -5059719 - MER51A LTR ERV1 0 634 3 430 207 200 27 chr11 143723775 143723925 -5059547 - MER66B LTR ERV1 -53 433 258 310 287 50 0 chr11 143727767 143727868 -5055604 - MER5A DNA MER1_type -75 114 9 302 318 53 8 chr11 143728164 143728296 -5055176 - MIR SINE MIR -7 255 118 318 216 178 21 chr11 143728302 143728442 -5055030 + MIR SINE MIR 33 206 -56 3690 193 62 51 chr11 143729130 143729531 -5053941 - L1MCb LINE L1 -4579 2166 1771 213 39 0 0 chr11 143729531 143729557 -5053915 + (TTA)n Simple_repeat Simple_repeat 2 27 0 3690 193 62 51 chr11 143729557 143729833 -5053639 - L1MCb LINE L1 -4974 1771 1499 7639 32 0 0 chr11 143729833 143731118 -5052354 - L1PA4 LINE L1 0 6155 4870 3690 193 62 51 chr11 143731118 143732403 -5051069 - L1MCb LINE L1 -5246 1499 1 442 298 164 0 chr11 143732451 143732676 -5050796 - MIR SINE MIR 0 262 1 325 278 0 44 chr11 143732693 143732783 -5050689 - L2 LINE L2 -58 3255 3170 587 264 47 59 chr11 143732857 143733030 -5050442 - MIR SINE MIR -21 187 13 185 274 84 56 chr11 143733243 143733422 -5050050 - L2 LINE L2 -262 3010 2827 223 254 218 0 chr11 143733672 143733782 -5049690 - L2 LINE L2 -878 2436 2303 331 298 102 96 chr11 143734341 143734781 -5048691 - L2 LINE L2 -4 3268 2826 241 100 89 0 chr11 143735461 143735551 -5047921 + (CA)n Simple_repeat Simple_repeat 2 99 0 657 83 74 15 chr11 143735564 143735904 -5047568 + (CA)n Simple_repeat Simple_repeat 1 360 0 302 165 0 139 chr11 143741896 143741975 -5041497 - L1MC4 LINE L1 -1339 6703 6636 293 263 13 13 chr11 143742868 143742944 -5040528 - L2 LINE L2 -6 3307 3232 990 368 52 31 chr11 143743242 143744052 -5039420 - L2 LINE L2 -270 3043 2211 211 245 20 0 chr11 143744250 143744299 -5039173 + MIR SINE MIR 110 159 -103 489 287 105 6 chr11 143747436 143747617 -5035855 - MIR SINE MIR -8 254 56 1641 136 19 8 chr11 143748586 143748843 -5034629 - AluJb SINE Alu -8 304 45 182 284 45 15 chr11 143751615 143751682 -5031790 + L2 LINE L2 3245 3313 0 3502 167 17 17 chr11 143752965 143754186 -5029286 - L1PB1 LINE L1 -325 5826 4613 8970 90 3 1 chr11 143754312 143755614 -5027858 + L1P LINE L1 1653 2956 -3190 5188 89 14 22 chr11 143755760 143756813 -5026659 - L1P3 LINE L1 -552 5620 4579 397 113 100 12 chr11 143756954 143757034 -5026438 - MER4B LTR ERV1 -523 87 1 2451 267 105 35 chr11 143757034 143757986 -5025486 - ERVL LTR ERVL -933 4831 3813 396 0 0 0 chr11 143758575 143758619 -5024853 + (TG)n Simple_repeat Simple_repeat 2 45 0 215 313 82 41 chr11 143758983 143759130 -5024342 - MIR SINE MIR -14 248 96 2937 204 35 12 chr11 143759697 143760768 -5022704 - HERVE LTR ERV1 -4940 2873 1700 232 295 16 33 chr11 143761757 143761879 -5021593 + CT-rich Low_complexity Low_complexity 6 125 0 1852 160 0 14 chr11 143762551 143762845 -5020627 + AluJb SINE Alu 1 290 -22 876 290 98 16 chr11 143763163 143763539 -5019933 + MLT1I LTR MaLR 1 407 -2 2733 91 7 27 chr11 143763942 143764351 -5019121 - L1P3 LINE L1 -5690 771 371 448 280 83 21 chr11 143764333 143764526 -5018946 - L1ME LINE L1 -5608 462 258 * 1826 168 0 13 chr11 143764541 143764839 -5018633 - AluSg SINE Alu -16 294 1 1152 109 45 23 chr11 143764844 143765064 -5018408 + L1M1 LINE L1 3132 3356 -4209 21 57 0 0 chr11 143765443 143765478 -5017994 + AT_rich Low_complexity Low_complexity 1 35 0 1656 143 118 4 chr11 143765481 143765760 -5017712 + AluSx SINE Alu 1 311 -1 339 349 11 48 chr11 143766089 143766278 -5017194 - MER5A DNA MER1_type -6 183 2 285 235 29 0 chr11 143766429 143766497 -5016975 - Charlie8 DNA MER1_type -1000 1417 1348 5420 177 8 60 chr11 143766690 143768053 -5015419 - L1M1 LINE L1 -743 5403 4105 498 294 99 6 chr11 143768055 143768368 -5015104 + L1 LINE L1 2767 3108 -3038 353 375 52 17 chr11 143770728 143771019 -5012453 - L1M3b LINE L1 -5771 510 210 942 243 10 0 chr11 143771234 143771440 -5012032 + Harlequin LTR ERV1 177 384 -6512 427 145 8 18 chr11 143771527 143771654 -5011818 + Harlequin LTR ERV1 525 683 -6213 1606 206 14 0 chr11 143772101 143772397 -5011075 + Harlequin LTR ERV1 665 964 -6849 1538 197 0 14 chr11 143772546 143772825 -5010647 + AluSc SINE Alu 14 288 -21 247 163 0 0 chr11 143772908 143772951 -5010521 - L1M3de LINE L1 -5898 755 713 1381 244 35 45 chr11 143773028 143773454 -5010018 - MSTB LTR MaLR -4 422 1 781 142 0 15 chr11 143775642 143775776 -5007696 + FLAM_C SINE Alu 2 133 0 466 288 50 0 chr11 143777120 143777259 -5006213 + L2 LINE L2 33 178 -3136 575 298 19 37 chr11 143777320 143777535 -5005937 + L2 LINE L2 3103 3313 0 256 281 15 32 chr11 143777779 143777914 -5005558 + MLT1J1 LTR MaLR 70 201 -208 239 304 98 29 chr11 143778437 143778539 -5004933 - L2 LINE L2 -2 3311 3203 436 269 188 12 chr11 143778773 143778933 -5004539 - MIR SINE MIR -59 203 16 2436 218 63 9 chr11 143779243 143779811 -5003661 - MER90 LTR ERV1 -15 599 1 301 307 95 91 chr11 143779841 143780105 -5003367 - L2 LINE L2 -69 3244 2980 383 224 0 0 chr11 143780941 143781008 -5002464 + L1MC4 LINE L1 6610 6676 -1366 1167 151 51 203 chr11 143781008 143781539 -5001933 + LTR1 LTR ERV1 2 451 -334 207 265 88 59 chr11 143782015 143782117 -5001355 - L2 LINE L2 -8 3264 3160 243 346 126 9 chr11 143782173 143782404 -5001068 + L2 LINE L2 2556 2813 -501 1795 192 16 19 chr11 143783055 143783117 -5000355 - MLT1A1 LTR MaLR 0 365 304 583 88 0 0 chr11 143783117 143783197 -5000275 + MADE1 DNA Mariner 1 80 0 1795 192 16 19 chr11 143783197 143783498 -4999974 - MLT1A1 LTR MaLR -61 304 3 304 304 188 0 chr11 143784142 143784254 -4999218 + MIR3 SINE MIR 67 199 -9 360 284 45 75 chr11 143784294 143784586 -4998886 + L1ME LINE L1 21 303 -5767 289 284 111 37 chr11 143785270 143785432 -4998040 + L2 LINE L2 3122 3295 -18 2257 106 0 0 chr11 143785437 143785730 -4997742 + AluSq SINE Alu 16 308 -5 1967 157 56 17 chr11 143785732 143786197 -4997275 - MLT2A2 LTR ERVL -66 488 1 258 290 245 14 chr11 143786405 143786691 -4996781 - MLT1J LTR MaLR -50 461 110 291 222 28 0 chr11 143786761 143786833 -4996639 - MLT1L LTR MaLR -537 78 5 246 305 42 42 chr11 143787062 143787180 -4996292 - MER5A DNA MER1_type -37 152 35 932 256 10 55 chr11 143790447 143790759 -4992713 - ERVL LTR ERVL -3322 2442 2145 1723 304 38 18 chr11 143790948 143791504 -4991968 - MLT2E LTR ERVL -59 569 3 1543 324 65 48 chr11 143791548 143792038 -4991434 - L2 LINE L2 -1216 2098 1585 873 149 0 0 chr11 143792038 143792192 -4991280 - L1MA4 LINE L1 -2 6298 6145 1543 324 65 48 chr11 143792192 143792556 -4990916 - L2 LINE L2 -1729 1585 1229 1643 210 5 22 chr11 143792562 143792829 -4990643 + L1 LINE L1 4020 4279 -1867 2193 134 0 0 chr11 143792829 143793128 -4990344 + AluSq SINE Alu 1 299 -14 1643 210 5 22 chr11 143793128 143793260 -4990212 + L1 LINE L1 4279 4412 -1734 4519 246 65 12 chr11 143793441 143794333 -4989139 - L1M4 LINE L1 -1198 4772 3761 2043 195 29 0 chr11 143794333 143794712 -4988760 - MLT1B LTR MaLR 0 390 1 4519 246 65 12 chr11 143794712 143795382 -4988090 - L1M4 LINE L1 -2209 3761 3128 3795 281 29 37 chr11 143795568 143797345 -4986127 + L1P LINE L1 1473 3236 -2910 283 133 0 0 chr11 143797554 143797599 -4985873 - THE1C LTR MaLR -330 45 1 636 278 88 80 chr11 143797847 143798498 -4984974 - L1M4 LINE L1 -5235 656 1 216 0 0 0 chr11 143798546 143798570 -4984902 + (ATG)n Simple_repeat Simple_repeat 2 25 0 251 294 15 0 chr11 143798570 143798638 -4984834 - MIR SINE MIR -123 139 71 324 0 0 0 chr11 143798703 143798739 -4984733 + (TG)n Simple_repeat Simple_repeat 2 37 0 1010 201 54 0 chr11 143799050 143799254 -4984218 + MER20 DNA MER1_type 5 219 0 366 277 80 72 chr11 143800715 143801105 -4982367 + SST1 Satellite centromeric 209 601 -962 215 24 0 98 chr11 143802020 143802061 -4981411 + (TG)n Simple_repeat Simple_repeat 1 37 0 289 291 69 57 chr11 143803259 143803506 -4979966 + SST1 Satellite centromeric 352 601 -962 260 326 54 42 chr11 143804452 143804878 -4978594 + SST1 Satellite centromeric 94 524 -1039 211 270 22 0 chr11 143805833 143805922 -4977550 + (TG)n Simple_repeat Simple_repeat 2 92 0 1004 94 0 0 chr11 143809946 143810073 -4973399 - FLAM_C SINE Alu -6 127 1 180 333 89 16 chr11 143811472 143811595 -4971877 - MIR3 SINE MIR -63 145 14 236 279 131 8 chr11 143811766 143811888 -4971584 - MIR3 SINE MIR -23 185 49 701 190 28 0 chr11 143813419 143813561 -4969911 + MER63A DNA MER1_type 64 209 -1 1323 173 47 7 chr11 143817361 143817639 -4965833 + L1MA3 LINE L1 6017 6305 0 212 265 36 36 chr11 143818566 143818649 -4964823 + MIR SINE MIR 7 89 -173 588 157 13 7 chr11 143820612 143820765 -4962707 + (CAGA)n Simple_repeat Simple_repeat 1 154 0 393 154 29 15 chr11 143820786 143820922 -4962550 + (CAGA)n Simple_repeat Simple_repeat 1 138 0 216 178 44 22 chr11 143820980 143821115 -4962357 + (CAGA)n Simple_repeat Simple_repeat 1 138 0 1675 190 0 7 chr11 143821610 143821894 -4961578 + AluJo SINE Alu 1 282 -30 215 284 181 32 chr11 143826936 143827091 -4956381 + MIR SINE MIR 33 210 -52 893 318 100 18 chr11 143827205 143827674 -4955798 + L2 LINE L2 2798 3312 -1 229 290 11 44 chr11 143828330 143828513 -4954959 + (CACG)n Simple_repeat Simple_repeat 3 179 0 288 313 42 36 chr11 143829897 143830063 -4953409 + L2 LINE L2 2885 3051 -221 189 246 213 0 chr11 143830152 143830213 -4953259 + L2 LINE L2 3238 3311 -2 385 271 140 32 chr11 143830338 143830561 -4952911 - MIR SINE MIR -1 261 14 191 365 0 0 chr11 143831339 143831402 -4952070 + L2 LINE L2 3236 3298 -15 245 416 0 9 chr11 143831812 143831925 -4951547 + L2 LINE L2 3157 3268 -4 201 161 0 0 chr11 143834624 143834655 -4948817 + polypurine Low_complexity Low_complexity 1 31 0 288 0 0 0 chr11 143835854 143835886 -4947586 + (TC)n Simple_repeat Simple_repeat 1 32 0 294 192 0 31 chr11 143835899 143836029 -4947443 + (TCTG)n Simple_repeat Simple_repeat 3 128 0 296 259 14 29 chr11 143836049 143836188 -4947284 + (TCTCTG)n Simple_repeat Simple_repeat 4 140 0 405 39 0 0 chr11 143836195 143836246 -4947226 + (TG)n Simple_repeat Simple_repeat 2 52 0 387 0 0 0 chr11 143836763 143836806 -4946666 + (TG)n Simple_repeat Simple_repeat 2 44 0 192 152 0 0 chr11 143837456 143837489 -4945983 + (CA)n Simple_repeat Simple_repeat 1 33 0 223 341 0 0 chr11 143837831 143837922 -4945550 + G-rich Low_complexity Low_complexity 2 92 0 225 0 0 0 chr11 143839008 143839033 -4944439 + (TCC)n Simple_repeat Simple_repeat 2 26 0 258 390 11 33 chr11 143840666 143840848 -4942624 + (CACG)n Simple_repeat Simple_repeat 1 178 0 * 366 287 61 18 chr11 143840731 143840895 -4942577 + (CATG)n Simple_repeat Simple_repeat 1 171 0 * 416 399 6 0 chr11 143840779 143840957 -4942515 + (CA)n Simple_repeat Simple_repeat 1 179 0 584 329 76 4 chr11 143842663 143842900 -4940572 - MIR SINE MIR 0 262 9 277 373 209 13 chr11 143842916 143843222 -4940250 - L3b LINE CR1 -24 1559 1194 721 276 66 70 chr11 143844135 143844939 -4938533 - L1MEc LINE L1 -4247 2149 1349 926 173 4 80 chr11 143844963 143845189 -4938283 - AluJb SINE Alu -24 288 80 511 152 59 17 chr11 143845349 143845485 -4937987 + L1ME LINE L1 5292 5444 -720 2129 83 45 0 chr11 143845485 143845773 -4937699 + AluY SINE Alu 1 301 -10 2121 120 3 0 chr11 143845783 143846091 -4937381 + AluSg SINE Alu 1 309 -1 1884 123 0 0 chr11 143846439 143846707 -4936765 + AluSx SINE Alu 1 268 -44 260 313 72 46 chr11 143846711 143846973 -4936499 + L1MEd LINE L1 480 748 -5371 645 340 99 34 chr11 143847123 143847451 -4936021 + L1MEd LINE L1 737 1103 -5016 2044 121 0 10 chr11 143847451 143847748 -4935724 + AluSx SINE Alu 1 294 -18 645 340 99 34 chr11 143847748 143847863 -4935609 + L1MEd LINE L1 1103 1209 -4910 243 125 0 0 chr11 143849668 143849708 -4933764 + (CA)n Simple_repeat Simple_repeat 2 41 0 841 161 62 0 chr11 143850044 143850205 -4933267 + FRAM SINE Alu 3 173 -3 1795 243 133 30 chr11 143851140 143851603 -4931869 - MLT1G1 LTR MaLR 0 595 68 2292 96 0 0 chr11 143851603 143851896 -4931576 - AluSg SINE Alu -17 293 1 1795 243 133 30 chr11 143851896 143851968 -4931504 - MLT1G1 LTR MaLR -527 68 5 1807 194 118 69 chr11 143852033 143852523 -4930949 - MLT2B2 LTR ERVL -1 514 1 1580 184 10 24 chr11 143853054 143853347 -4930125 + AluJo SINE Alu 1 289 -23 2274 97 0 3 chr11 143855022 143855331 -4928141 + AluSq SINE Alu 6 313 0 223 226 0 48 chr11 143856217 143856279 -4927193 + CT-rich Low_complexity Low_complexity 2 60 0 356 281 31 16 chr11 143856393 143856521 -4926951 + MIR3 SINE MIR 3 132 -76 258 367 109 0 chr11 143856555 143856683 -4926789 - L2 LINE L2 -12 3260 3119 198 191 0 0 chr11 143858840 143858887 -4924585 + (CGTG)n Simple_repeat Simple_repeat 1 47 0 300 333 26 9 chr11 143859607 143859721 -4923751 + MIR SINE MIR 138 253 -9 311 265 75 26 chr11 143859827 143859965 -4923507 + MIR SINE MIR 30 168 -78 * 674 299 98 0 chr11 143859948 143860182 -4923290 - MIR SINE MIR 0 262 6 287 246 26 97 chr11 143861694 143861808 -4921664 + MER5A DNA MER1_type 19 124 -65 294 318 34 40 chr11 143861987 143862135 -4921337 + MIR SINE MIR 46 192 -70 202 336 79 66 chr11 143863534 143863775 -4919697 - L3 LINE CR1 -1 1576 1333 249 241 0 17 chr11 143865113 143865171 -4918301 - L2 LINE L2 -5 3267 3211 258 167 0 0 chr11 143865581 143865641 -4917831 + (CA)n Simple_repeat Simple_repeat 2 61 0 852 264 96 22 chr11 143865658 143866075 -4917397 - LTR16A1 LTR ERVL 0 457 10 1257 197 63 146 chr11 143869813 143870381 -4913091 + MLT1F LTR MaLR 22 542 0 295 246 14 0 chr11 143870381 143870450 -4913022 + L2 LINE L2 3203 3272 0 569 282 126 23 chr11 143870894 143870928 -4912544 - L2 LINE L2 0 3313 3284 2380 170 25 7 chr11 143870928 143871333 -4912139 - MLT2D LTR ERVL -2 412 1 569 282 126 23 chr11 143871333 143871646 -4911826 - L2 LINE L2 -29 3284 2930 352 339 73 52 chr11 143872617 143872865 -4910607 - L2 LINE L2 0 3272 3020 784 264 72 60 chr11 143874272 143874606 -4908866 - L1MD2 LINE L1 -250 6109 5772 249 338 58 50 chr11 143874698 143875074 -4908398 - L2 LINE L2 -2 3311 2933 193 281 207 0 chr11 143876786 143876868 -4906604 - MIR SINE MIR -74 188 90 236 326 11 11 chr11 143877801 143877893 -4905579 + MIR3 SINE MIR 67 158 -50 313 121 15 15 chr11 143878101 143878167 -4905305 + GA-rich Low_complexity Low_complexity 3 68 0 217 372 98 6 chr11 143880428 143880592 -4902880 + MIR SINE MIR 84 262 0 1380 223 100 32 chr11 143880754 143881172 -4902300 + MLT2B1 LTR ERVL 1 519 -35 339 89 0 0 chr11 143881172 143881228 -4902244 + (CA)n Simple_repeat Simple_repeat 2 57 0 1380 223 100 32 chr11 143881228 143881267 -4902205 + MLT2B1 LTR ERVL 519 554 0 377 372 56 29 chr11 143881492 143881866 -4901606 + L2 LINE L2 2869 3252 -61 217 289 13 26 chr11 143881890 143881966 -4901506 - L2 LINE L2 -9 3263 3189 1330 158 12 35 chr11 143882688 143882942 -4900530 + L1PA11 LINE L1 5927 6174 0 2571 51 0 0 chr11 143883668 143883979 -4899493 + L1PA5 LINE L1 5841 6151 -3 186 179 51 0 chr11 143884489 143884528 -4898944 + MIR SINE MIR 57 97 -111 680 247 98 21 chr11 143884563 143884720 -4898752 + MER3 DNA MER1_type 1 177 -32 1969 122 37 0 chr11 143884720 143885014 -4898458 + AluSx SINE Alu 1 305 -7 680 247 98 21 chr11 143885014 143885050 -4898422 + MER3 DNA MER1_type 177 209 0 208 164 109 55 chr11 143885583 143885638 -4897834 + MIR SINE MIR 107 164 -98 232 157 39 0 chr11 143885675 143885726 -4897746 + (TAGA)n Simple_repeat Simple_repeat 4 56 0 1786 203 18 72 chr11 143885730 143886121 -4897351 - MLT2D LTR ERVL -40 480 4 3076 151 31 14 chr11 143886204 143886787 -4896685 + L1MA8 LINE L1 5357 5949 -342 1920 137 30 0 chr11 143886787 143887086 -4896386 + AluJo SINE Alu 1 308 -4 303 328 47 16 chr11 143887444 143887572 -4895900 - MIR SINE MIR -47 215 84 701 81 0 0 chr11 143887909 143887996 -4895476 - AluJ/FLAM SINE Alu -215 97 11 614 332 194 18 chr11 143888008 143888234 -4895238 + L2 LINE L2 2852 3037 -276 300 111 0 0 chr11 143888234 143888279 -4895193 + (CA)n Simple_repeat Simple_repeat 1 45 0 614 332 194 18 chr11 143888279 143888444 -4895028 + L2 LINE L2 3037 3312 -1 1939 116 53 0 chr11 143889510 143889794 -4893678 - AluSq SINE Alu -6 307 9 445 242 67 0 chr11 143890152 143890272 -4893200 + MIR SINE MIR 16 143 -65 515 221 19 0 chr11 143891031 143891135 -4892337 + MER81 DNA DNA 1 106 -8 471 194 61 0 chr11 143891173 143891271 -4892201 + MER81 DNA DNA 3 106 -8 471 194 61 0 chr11 143891309 143891407 -4892065 + MER81 DNA DNA 3 106 -8 471 194 61 0 chr11 143891445 143891543 -4891929 + MER81 DNA DNA 3 106 -8 471 194 61 0 chr11 143891581 143891679 -4891793 + MER81 DNA DNA 3 106 -8 471 194 61 0 chr11 143891717 143891815 -4891657 + MER81 DNA DNA 3 106 -8 486 263 65 43 chr11 143892036 143892222 -4891250 + MIR SINE MIR 70 259 -3 208 255 43 121 chr11 143892226 143892367 -4891105 - MIR SINE MIR -26 236 107 248 279 66 76 chr11 143892755 143892952 -4890520 + L2 LINE L2 3009 3203 -69 4085 135 125 119 chr11 143893024 143894382 -4889090 - pTR5 LTR ERV1 -2 2436 75 299 344 88 0 chr11 143894525 143894650 -4888822 + L2 LINE L2 3178 3313 0 304 253 25 0 chr11 143894950 143895029 -4888443 + MIR SINE MIR 108 188 -74 22 0 0 0 chr11 143895267 143895289 -4888183 + AT_rich Low_complexity Low_complexity 1 22 0 254 377 45 7 chr11 143896218 143896372 -4887100 + MIR3 SINE MIR 38 197 -11 221 355 66 16 chr11 143896443 143896564 -4886908 + MIR SINE MIR 86 212 -50 306 0 0 0 chr11 143896599 143896633 -4886839 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2107 96 0 0 chr11 143896636 143896916 -4886556 - AluSx SINE Alu -32 280 1 1258 175 79 12 chr11 143897329 143897569 -4885903 - AluJo SINE Alu -56 256 1 181 293 35 0 chr11 143897689 143897747 -4885725 - L2 LINE L2 -22 3250 3191 1889 151 0 0 chr11 143897747 143898066 -4885406 - AluSx SINE Alu 0 312 1 2305 218 48 13 chr11 143898192 143898715 -4884757 - MLT1F LTR MaLR -1 541 1 1768 173 0 3 chr11 143898731 143899026 -4884446 + AluJo SINE Alu 1 294 -18 22 0 0 0 chr11 143899026 143899048 -4884424 + AT_rich Low_complexity Low_complexity 1 22 0 303 177 0 0 chr11 143900325 143900387 -4883085 + (CA)n Simple_repeat Simple_repeat 2 63 0 1708 267 42 59 chr11 143900452 143900648 -4882824 + L1ME3A LINE L1 5296 5494 -676 1578 123 135 8 chr11 143900648 143900908 -4882564 + AluSg1 SINE Alu 10 302 -7 1708 267 42 59 chr11 143900908 143901405 -4882067 + L1ME3A LINE L1 5494 5977 -193 321 260 45 62 chr11 143901458 143901635 -4881837 + L1ME3A LINE L1 5989 6162 -8 1630 162 20 20 chr11 143901643 143901940 -4881532 + AluJo SINE Alu 1 297 -15 211 333 83 8 chr11 143902053 143902185 -4881287 + MIR SINE MIR 88 229 -33 357 109 0 0 chr11 143902223 143902278 -4881194 + (TGG)n Simple_repeat Simple_repeat 1 55 0 965 260 127 53 chr11 143902353 143902826 -4880646 - MLT1G1 LTR MaLR 0 595 88 359 235 252 0 chr11 143902891 143903006 -4880466 + MIR SINE MIR 2 145 -117 308 395 43 9 chr11 143903277 143903487 -4879985 + MIR SINE MIR 46 262 0 200 231 0 58 chr11 143903655 143903707 -4879765 - L2 LINE L2 0 3313 3265 23 0 0 0 chr11 143904957 143904980 -4878492 + AT_rich Low_complexity Low_complexity 1 23 0 1925 148 0 0 chr11 143904989 143905280 -4878192 + AluJo SINE Alu 1 291 -21 260 238 0 0 chr11 143905584 143905647 -4877825 + L1MA7 LINE L1 5994 6056 -235 776 215 45 18 chr11 143905649 143905787 -4877685 + L1MA8 LINE L1 6089 6238 -74 1603 128 117 15 chr11 143905787 143906061 -4877411 + AluSg SINE Alu 1 302 -8 776 215 45 18 chr11 143906061 143906139 -4877333 + L1MA8 LINE L1 6238 6312 0 960 81 110 0 chr11 143906205 143906341 -4877131 - AluSp SINE Alu -162 151 1 349 230 62 35 chr11 143907448 143907561 -4875911 + MIR3 SINE MIR 86 201 -7 372 299 58 29 chr11 143909263 143909400 -4874072 + MIR SINE MIR 14 154 -108 1141 144 0 0 chr11 143910125 143910299 -4873173 - FRAM SINE Alu -3 173 1 214 274 14 14 chr11 143910381 143910454 -4873018 - MIR SINE MIR -109 153 81 318 299 158 0 chr11 143911026 143911153 -4872319 - MIR3 SINE MIR -24 184 38 237 368 88 0 chr11 143912280 143912394 -4871078 + MIR SINE MIR 16 139 -69 2186 113 3 0 chr11 143912904 143913214 -4870258 + AluSp SINE Alu 1 311 -2 456 19 0 0 chr11 143914504 143914557 -4868915 + (TG)n Simple_repeat Simple_repeat 2 54 0 194 258 183 21 chr11 143914781 143914874 -4868598 - MIR SINE MIR -36 226 119 2107 122 3 0 chr11 143915014 143915318 -4868154 + AluSx SINE Alu 1 305 -7 184 287 46 113 chr11 143916363 143916558 -4866914 - MIR SINE MIR -17 245 64 293 341 0 47 chr11 143916676 143916805 -4866667 - MIR SINE MIR -23 239 117 262 401 6 29 chr11 143916891 143917063 -4866409 + MIR SINE MIR 63 230 -32 409 269 57 28 chr11 143918608 143918749 -4864723 - MIR SINE MIR -111 151 7 374 323 85 7 chr11 143919167 143919389 -4864083 - MIR SINE MIR 0 262 24 463 263 11 75 chr11 143920031 143920217 -4863255 + MIR3 SINE MIR 30 203 -5 194 296 153 0 chr11 143920476 143920574 -4862898 - L2 LINE L2 -2 3311 3199 478 285 22 14 chr11 143921199 143921380 -4862092 - MIR SINE MIR -50 212 34 227 180 40 0 chr11 143926404 143926454 -4857018 - MIR SINE MIR -95 167 116 2315 95 3 0 chr11 143927052 143927348 -4856124 + AluSq SINE Alu 1 297 -16 240 176 0 0 chr11 143928003 143928071 -4855401 + CT-rich Low_complexity Low_complexity 1 68 0 325 237 31 0 chr11 143928500 143928597 -4854875 - MIR3 SINE MIR -22 186 87 293 293 26 35 chr11 143929124 143929240 -4854232 + L2 LINE L2 3191 3305 -8 2510 32 0 0 chr11 143929353 143929666 -4853806 - AluY SINE Alu 0 313 1 194 322 25 50 chr11 143930499 143930620 -4852852 - MIR SINE MIR -70 192 75 * 443 278 237 0 chr11 143930616 143930814 -4852658 - MIR SINE MIR -3 259 15 187 224 15 15 chr11 143931321 143931388 -4852084 + GA-rich Low_complexity Low_complexity 2 68 0 276 279 117 9 chr11 143933384 143933495 -4849977 + MER91A DNA MER1_type 22 144 -52 410 256 64 0 chr11 143934149 143934274 -4849198 + MIR SINE MIR 130 262 0 790 176 51 37 chr11 143934295 143934511 -4848961 + MER20 DNA MER1_type 1 219 0 294 213 113 0 chr11 143935651 143935731 -4847741 + MER117 DNA MER1_type 37 125 -72 200 254 0 18 chr11 143935819 143935874 -4847598 + MIR3 SINE MIR 153 206 -2 221 243 114 0 chr11 143937550 143937620 -4845852 - L3b LINE CR1 -190 1393 1316 194 261 0 0 chr11 143938977 143939023 -4844449 - MIR3 SINE MIR -6 202 157 246 169 51 0 chr11 143939331 143939449 -4844023 + (TA)n Simple_repeat Simple_repeat 1 124 0 1922 135 51 0 chr11 143939449 143939723 -4843749 - AluSx SINE Alu -24 288 1 541 165 70 0 chr11 143939924 143940039 -4843433 + L1MA4 LINE L1 6152 6274 -26 1787 164 7 3 chr11 143940644 143940930 -4842542 + AluJo SINE Alu 1 287 -25 1831 134 4 18 chr11 143941207 143941484 -4841988 + AluJb SINE Alu 21 293 -19 432 77 0 0 chr11 143941960 143942025 -4841447 + (CGTG)n Simple_repeat Simple_repeat 3 67 0 648 120 16 56 chr11 143942199 143942324 -4841148 - FLAM_C SINE Alu -1 142 23 1757 138 48 41 chr11 143942624 143942915 -4840557 + AluJb SINE Alu 1 293 -19 2236 97 3 7 chr11 143942917 143943225 -4840247 + AluY SINE Alu 1 307 -4 3750 101 20 0 chr11 143943299 143943842 -4839630 - MER41A LTR ERV1 0 554 1 2195 101 25 0 chr11 143945090 143945376 -4838096 + AluSq SINE Alu 2 294 -19 1747 204 3 0 chr11 143945383 143945692 -4837780 + AluJo SINE Alu 1 310 -2 361 272 147 18 chr11 143945959 143946183 -4837289 - LTR16A1 LTR ERVL 0 457 205 1139 82 0 0 chr11 143946313 143946448 -4837024 + AluSq/x SINE Alu 1 135 -178 2045 145 0 0 chr11 143946448 143946786 -4836686 + AluSg SINE Alu 1 310 0 180 293 35 0 chr11 143946786 143946844 -4836628 + L2 LINE L2 3191 3250 -22 1385 171 79 12 chr11 143946964 143947204 -4836268 + AluJo SINE Alu 1 256 -56 2238 96 0 0 chr11 143947617 143947897 -4835575 + AluSx SINE Alu 1 280 -32 378 0 0 0 chr11 143947900 143947942 -4835530 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 213 331 74 25 chr11 143947977 143948098 -4835374 - MIR SINE MIR -50 212 86 240 357 52 13 chr11 143948169 143948323 -4835149 - MIR3 SINE MIR -11 197 38 2153 123 0 10 chr11 143948993 143949294 -4834178 - AluSx SINE Alu -14 298 1 452 341 74 16 chr11 143949299 143949622 -4833850 - L1MEd LINE L1 -5041 1078 737 347 303 67 67 chr11 143949772 143950038 -4833434 - L1MEd LINE L1 -5371 748 480 1838 122 51 0 chr11 143950038 143950293 -4833179 - AluSx SINE Alu -44 268 1 347 303 67 67 chr11 143950293 143950353 -4833119 - L1MEd LINE L1 -5638 481 422 274 61 41 20 chr11 143950759 143950808 -4832664 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 1269 145 168 63 chr11 143951193 143951243 -4832229 - MER83 LTR ERV1 -8 440 397 2343 120 3 0 chr11 143951243 143951552 -4831920 + AluSp SINE Alu 1 310 -3 1269 145 168 63 chr11 143951552 143951852 -4831620 - MER83 LTR ERV1 -51 397 53 702 122 0 35 chr11 143951853 143951968 -4831504 - MER83 LTR ERV1 -337 111 1 520 308 77 25 chr11 143952259 143952778 -4830694 + L1M4 LINE L1 2495 3040 -3106 3664 96 23 61 chr11 143953009 143953704 -4829768 + MER4A LTR ERV1 1 779 0 245 340 54 7 chr11 143953704 143953851 -4829621 - L2 LINE L2 -283 2989 2836 1504 163 61 28 chr11 143953916 143954242 -4829230 + MER1B DNA MER1_type 1 337 0 230 192 0 19 chr11 143954336 143954388 -4829084 - L2 LINE L2 0 3313 3263 184 281 11 67 chr11 143954413 143954502 -4828970 - L2 LINE L2 -665 2649 2566 2546 58 0 0 chr11 143954931 143955226 -4828246 - AluY SINE Alu -16 295 1 306 0 0 0 chr11 143956393 143956427 -4827045 + (CA)n Simple_repeat Simple_repeat 2 35 0 2050 137 21 77 chr11 143956992 143957156 -4826316 - MER4B LTR ERV1 -135 475 303 1758 160 13 35 chr11 143957156 143957468 -4826004 + AluJb SINE Alu 6 310 -2 2050 137 21 77 chr11 143957468 143957603 -4825869 - MER4B LTR ERV1 -307 303 211 2107 136 3 3 chr11 143957603 143957904 -4825568 - AluSx SINE Alu -11 301 1 2050 137 21 77 chr11 143957904 143958085 -4825387 - MER4B LTR ERV1 -399 211 21 2220 100 0 17 chr11 143958086 143958387 -4825085 - AluSx SINE Alu -16 296 1 2346 116 0 0 chr11 143958552 143958855 -4824617 - AluSx SINE Alu -9 303 1 2335 104 0 3 chr11 143959192 143959490 -4823982 + AluSp SINE Alu 1 297 -16 214 182 0 0 chr11 143960399 143960443 -4823029 + T-rich Low_complexity Low_complexity 2 45 0 195 271 0 0 chr11 143960694 143960742 -4822730 - L2 LINE L2 -32 3281 3234 2033 124 60 26 chr11 143960814 143961162 -4822310 + THE1B LTR MaLR 1 360 -4 11198 75 2 55 chr11 143961166 143962834 -4820638 + THE1B-int LTR MaLR 1 1580 0 1974 147 51 20 chr11 143962834 143963187 -4820285 + THE1B LTR MaLR 1 364 0 215 227 0 0 chr11 143963719 143963763 -4819709 + CT-rich Low_complexity Low_complexity 1 44 0 268 224 53 13 chr11 143964946 143965022 -4818450 + MIR SINE MIR 184 262 0 1263 256 106 15 chr11 143965123 143965530 -4817942 + MER69 DNA AcHobo 1 444 -2082 1304 206 212 8 chr11 143965559 143966036 -4817436 + MER69 DNA AcHobo 1906 2479 -47 199 418 35 6 chr11 143966423 143966593 -4816879 + MIR SINE MIR 32 206 -56 1643 178 44 4 chr11 143967238 143967542 -4815930 - AluJo SINE Alu 0 315 1 195 42 0 0 chr11 143967646 143967670 -4815802 + (CA)n Simple_repeat Simple_repeat 2 25 0 192 346 37 0 chr11 143968123 143968204 -4815268 + MIR SINE MIR 56 139 -123 865 199 90 0 chr11 143968279 143968480 -4814992 - MER20 DNA MER1_type 0 219 1 206 396 11 0 chr11 143968501 143968592 -4814880 - MIR SINE MIR -77 131 40 34 0 0 0 chr11 143968830 143968864 -4814608 + AT_rich Low_complexity Low_complexity 1 34 0 1168 110 0 0 chr11 143969233 143969387 -4814085 - AluSg/x SINE Alu -16 294 141 7216 29 11 0 chr11 143969750 143970868 -4812604 - L1PA4 LINE L1 0 6155 5031 300 100 0 20 chr11 143971600 143971650 -4811822 + FLAM SINE Alu 83 131 -2 2168 98 0 14 chr11 143971654 143971939 -4811533 + AluY SINE Alu 1 281 -30 396 59 0 0 chr11 143971939 143971990 -4811482 + (TAGA)n Simple_repeat Simple_repeat 1 51 0 631 138 0 0 chr11 143971996 143972090 -4811382 + FRAM SINE Alu 65 158 -18 228 382 85 9 chr11 143972586 143972798 -4810674 + L2 LINE L2 2826 3053 -219 188 285 32 0 chr11 143972800 143972863 -4810609 + L2 LINE L2 2996 3061 -219 188 300 0 33 chr11 143972872 143972932 -4810540 + L2 LINE L2 3009 3066 -247 183 328 0 0 chr11 143973298 143973356 -4810116 + L2 LINE L2 2996 3053 -219 189 281 0 35 chr11 143973370 143973427 -4810045 + L2 LINE L2 3009 3063 -250 192 274 39 0 chr11 143973516 143973567 -4809905 + L2 LINE L2 3009 3061 -252 180 328 0 0 chr11 143973804 143973862 -4809610 + L2 LINE L2 2996 3053 -219 363 235 160 82 chr11 143974142 143974423 -4809049 + L2 LINE L2 3009 3311 -2 1868 129 7 17 chr11 143974854 143975148 -4808324 + AluSc SINE Alu 1 291 -18 1830 142 44 7 chr11 143975479 143975774 -4807698 - AluSx SINE Alu -6 306 1 198 71 0 0 chr11 143977359 143977387 -4806085 + (TA)n Simple_repeat Simple_repeat 1 28 0 1867 172 0 7 chr11 143978428 143978725 -4804747 + AluJb SINE Alu 6 300 -12 2228 81 0 14 chr11 143979097 143979411 -4804061 - AluSg SINE Alu 0 310 1 200 243 90 72 chr11 143980013 143980124 -4803348 + L2 LINE L2 3106 3218 -54 519 301 114 9 chr11 143980156 143980375 -4803097 - MIR SINE MIR -19 243 2 263 235 29 0 chr11 143981234 143981302 -4802170 - MIR SINE MIR -8 254 185 1398 189 54 0 chr11 143981305 143981565 -4801907 + AluJo SINE Alu 15 288 -24 350 267 133 0 chr11 143981566 143981701 -4801771 - MIR SINE MIR -62 200 48 36644 47 9 1 chr11 143981702 143986991 -4796481 + L1PA5 LINE L1 821 6143 -11 400 252 44 30 chr11 143987010 143987145 -4796327 + L1ME1 LINE L1 2920 3056 -3090 1131 209 5 0 chr11 143987174 143987394 -4796078 + AluJo SINE Alu 87 307 -5 2765 196 61 110 chr11 143987400 143988479 -4794993 + L1ME1 LINE L1 3073 4088 -2058 2060 121 0 17 chr11 143988479 143988769 -4794703 - AluSx SINE Alu -27 285 1 2765 196 61 110 chr11 143988769 143988896 -4794576 + L1ME1 LINE L1 4088 4220 -1926 729 192 6 110 chr11 143988908 143989037 -4794435 + MER58A DNA MER1_type 1 107 -234 3111 108 26 2 chr11 143989037 143989491 -4793981 - MER4C LTR ERV1 0 465 1 729 192 6 110 chr11 143989491 143989543 -4793929 + MER58A DNA MER1_type 107 163 -61 2382 199 53 93 chr11 143989544 143990371 -4793101 + L1ME1 LINE L1 5365 6158 -8 2006 73 8 4 chr11 143990644 143990903 -4792569 - AluY SINE Alu -12 299 40 2108 128 0 3 chr11 143991591 143991888 -4791584 - AluSx SINE Alu -16 296 1 480 268 110 31 chr11 143992055 143992283 -4791189 - MIR SINE MIR -8 254 9 22 0 0 0 chr11 143992598 143992620 -4790852 + AT_rich Low_complexity Low_complexity 1 22 0 2131 94 0 0 chr11 143992640 143992907 -4790565 + AluSq SINE Alu 34 300 -13 1319 123 98 16 chr11 143992922 143993136 -4790336 + L1P4 LINE L1 5254 5492 -674 2312 107 3 0 chr11 143993136 143993436 -4790036 + AluSx SINE Alu 1 301 -11 1319 123 98 16 chr11 143993436 143993465 -4790007 + L1P4 LINE L1 5492 5517 -649 533 155 58 19 chr11 143993465 143993568 -4789904 + FLAM_A SINE Alu 32 138 -4 700 271 87 59 chr11 143993613 143993816 -4789656 + L1MEd LINE L1 633 829 -5290 2438 90 3 0 chr11 143993816 143994128 -4789344 + AluSp SINE Alu 1 313 0 700 271 87 59 chr11 143994128 143994532 -4788940 + L1MEd LINE L1 829 1257 -4862 732 218 0 27 chr11 143994552 143994699 -4788773 + AluJo SINE Alu 5 147 -165 280 241 36 12 chr11 143994699 143994782 -4788690 + MLT1A2 LTR MaLR 289 373 -1 185 200 0 0 chr11 143995529 143995569 -4787903 + MIR SINE MIR 217 256 -6 253 147 59 44 chr11 143996145 143996213 -4787259 - L1ME4a LINE L1 -206 5915 5847 298 293 13 0 chr11 143996623 143996698 -4786774 + L2 LINE L2 3227 3302 -11 1975 119 31 7 chr11 143997347 143997633 -4785839 - AluSc SINE Alu -16 293 1 1906 109 63 14 chr11 143997662 143997947 -4785525 + AluSx SINE Alu 1 299 -13 484 290 26 0 chr11 143998960 143999115 -4784357 + MIR SINE MIR 103 261 -1 232 250 57 23 chr11 144000089 144000177 -4783295 + MIR SINE MIR 132 222 -40 1353 123 5 14 chr11 144000901 144001120 -4782352 + AluSg/x SINE Alu 83 299 -13 2444 80 6 3 chr11 144001478 144001789 -4781683 + AluSx SINE Alu 1 312 0 230 305 17 8 chr11 144002297 144002415 -4781057 - HAL1 LINE L1 -876 1631 1513 2342 86 0 3 chr11 144002604 144002905 -4780567 + AluY SINE Alu 1 300 -11 335 226 124 60 chr11 144002916 144003034 -4780438 - L1MEd LINE L1 -4903 1216 1107 2139 123 0 10 chr11 144003034 144003336 -4780136 - AluSx SINE Alu -13 299 1 335 226 124 60 chr11 144003336 144003451 -4780021 - L1MEd LINE L1 -5012 1107 968 322 303 67 67 chr11 144003814 144004080 -4779392 - L1MEd LINE L1 -5371 748 480 1813 122 51 0 chr11 144004080 144004335 -4779137 - AluSx SINE Alu -44 268 1 322 303 67 67 chr11 144004335 144004395 -4779077 - L1MEd LINE L1 -5638 481 422 274 61 41 20 chr11 144004800 144004849 -4778623 + (CAAAA)n Simple_repeat Simple_repeat 2 51 0 1365 111 126 184 chr11 144005233 144005283 -4778189 - MER83 LTR ERV1 -8 440 389 2304 120 3 0 chr11 144005283 144005592 -4777880 + AluSp SINE Alu 1 310 -3 1365 111 126 184 chr11 144005592 144006008 -4777464 - MER83 LTR ERV1 -59 389 1 552 284 89 34 chr11 144006322 144006818 -4776654 + L1M4 LINE L1 2518 3040 -3106 3864 96 23 61 chr11 144007049 144007744 -4775728 + MER4A LTR ERV1 1 779 0 210 340 54 7 chr11 144007744 144007891 -4775581 - L2 LINE L2 -283 2989 2836 1558 156 61 28 chr11 144007956 144008282 -4775190 + MER1B DNA MER1_type 1 337 0 218 192 0 19 chr11 144008376 144008428 -4775044 - L2 LINE L2 0 3313 3263 2520 58 0 0 chr11 144008971 144009266 -4774206 - AluY SINE Alu -16 295 1 231 36 0 0 chr11 144010435 144010463 -4773009 + (CA)n Simple_repeat Simple_repeat 2 29 0 2071 114 23 123 chr11 144011027 144011195 -4772277 - MER4B LTR ERV1 -130 534 351 1700 160 13 35 chr11 144011195 144011507 -4771965 + AluJb SINE Alu 6 310 -2 2071 114 23 123 chr11 144011507 144011655 -4771817 - MER4B LTR ERV1 -313 351 190 1784 144 14 11 chr11 144011655 144011940 -4771532 - AluSx SINE Alu -26 286 1 2071 114 23 123 chr11 144011940 144012123 -4771349 - MER4B LTR ERV1 -474 190 31 2360 95 0 0 chr11 144012123 144012417 -4771055 - AluSg SINE Alu -16 294 1 2071 114 23 123 chr11 144012417 144012446 -4771026 - MER4B LTR ERV1 -633 31 1 2122 131 0 3 chr11 144017059 144017356 -4766116 + AluSx SINE Alu 1 296 -16 1637 124 56 109 chr11 144018079 144018475 -4764997 + THE1C LTR MaLR 1 375 0 1366 160 15 77 chr11 144018541 144018765 -4764707 - MLT1B LTR MaLR 0 390 191 2314 88 17 0 chr11 144018765 144019059 -4764413 - AluY SINE Alu -12 299 1 1366 160 15 77 chr11 144019059 144019159 -4764313 - MLT1B LTR MaLR -199 191 86 2086 119 3 3 chr11 144019363 144019656 -4763816 + AluSx SINE Alu 1 293 -19 4294 243 76 37 chr11 144020119 144021143 -4762329 + L1M4 LINE L1 2 984 -5662 189 74 0 0 chr11 144021143 144021170 -4762302 + (CAA)n Simple_repeat Simple_repeat 1 27 0 4294 243 76 37 chr11 144021170 144022199 -4761273 + L1M4 LINE L1 984 2136 -4510 2799 186 25 16 chr11 144022219 144022768 -4760704 - L1MCa LINE L1 -5852 574 21 2059 218 52 14 chr11 144022767 144023272 -4760200 - L1 LINE L1 -1827 4319 3796 * 3919 146 81 22 chr11 144023277 144024063 -4759409 + L1MCa LINE L1 587 1419 -5007 249 83 0 0 chr11 144025829 144025865 -4757607 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 279 0 0 0 chr11 144027215 144027246 -4756226 + (TG)n Simple_repeat Simple_repeat 1 31 0 1399 230 31 12 chr11 144029285 144029611 -4753861 + MLT2D LTR ERVL 82 413 -1 1215 139 189 42 chr11 144029843 144030102 -4753370 + AluSg SINE Alu 2 298 -2 552 168 7 112 chr11 144031638 144031677 -4751795 - L1M4 LINE L1 -1939 4207 4166 2154 106 20 7 chr11 144031677 144031838 -4751634 - AluSq SINE Alu -17 296 128 198 0 0 0 chr11 144031838 144031860 -4751612 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 2154 106 20 7 chr11 144031860 144031990 -4751482 - AluSq SINE Alu -185 128 1 552 168 7 112 chr11 144031990 144032093 -4751379 - L1M4 LINE L1 -1980 4166 4080 3158 194 143 104 chr11 144032093 144032879 -4750593 + L1MD3 LINE L1 6451 7205 -790 538 213 0 0 chr11 144032879 144032973 -4750499 + MLT1F1 LTR MaLR 1 94 -473 3158 194 143 104 chr11 144032973 144033152 -4750320 + L1MD3 LINE L1 7205 7376 -619 1781 171 17 7 chr11 144033152 144033450 -4750022 - AluJo SINE Alu -11 301 1 3158 194 143 104 chr11 144033450 144033564 -4749908 + L1MD3 LINE L1 7376 7670 -325 2726 195 95 45 chr11 144033563 144034497 -4748975 + L1MCa LINE L1 2301 3211 -3215 * 7501 37 9 0 chr11 144034497 144035867 -4747605 + L1PA5 LINE L1 4767 6154 0 253 266 38 13 chr11 144035933 144036012 -4747460 - L2 LINE L2 -4 3268 3188 480 268 110 31 chr11 144036285 144036513 -4746959 + MIR SINE MIR 9 254 -8 2108 128 0 3 chr11 144036680 144036977 -4746495 + AluSx SINE Alu 1 296 -16 1925 78 16 8 chr11 144037665 144037922 -4745550 + AluY SINE Alu 40 298 -13 2627 59 0 0 chr11 144038668 144038973 -4744499 + AluY SINE Alu 1 305 -6 246 274 16 0 chr11 144041173 144041235 -4742237 + L3 LINE CR1 503 565 -1012 1525 106 173 16 chr11 144041992 144042247 -4741225 - AluSg1 SINE Alu -14 295 1 315 242 10 30 chr11 144042741 144042840 -4740632 - L1MC5 LINE L1 -38 7923 7827 593 120 53 8 chr11 144043639 144043772 -4739700 + L1MCa LINE L1 1398 1536 -4890 2534 189 47 38 chr11 144043782 144044687 -4738785 - L1M4 LINE L1 -549 5625 4727 187 200 0 25 chr11 144044732 144044772 -4738700 + L2 LINE L2 3191 3229 -84 1176 110 43 0 chr11 144044774 144044937 -4738535 - AluSg/x SINE Alu -10 302 133 184 258 31 72 chr11 144044942 144045025 -4738447 + L2 LINE L2 3221 3301 -12 2222 110 7 3 chr11 144045025 144045324 -4738148 + AluSq SINE Alu 1 300 -13 184 258 31 72 chr11 144045324 144045337 -4738135 + L2 LINE L2 3301 3313 0 2627 59 0 0 chr11 144046074 144046379 -4737093 + AluY SINE Alu 1 305 -6 246 274 16 0 chr11 144049382 144049444 -4734028 + L3 LINE CR1 503 565 -1012 1525 106 173 16 chr11 144050200 144050455 -4733017 - AluSg1 SINE Alu -14 295 1 315 242 10 30 chr11 144050949 144051048 -4732424 - L1MC5 LINE L1 -38 7923 7827 3764 169 113 40 chr11 144052669 144053451 -4730021 - L1MB7 LINE L1 -16 6168 5247 721 218 0 0 chr11 144053451 144053575 -4729897 - FLAM_A SINE Alu -6 127 4 3764 169 113 40 chr11 144053575 144053949 -4729523 - L1MB7 LINE L1 -937 5247 4902 728 215 130 56 chr11 144055156 144055547 -4727925 + L1MC5 LINE L1 7410 7829 -132 1669 151 14 11 chr11 144056639 144056917 -4726555 - AluJo SINE Alu -33 279 1 2331 103 3 0 chr11 144057224 144057534 -4725938 + AluSx SINE Alu 2 312 0 249 83 0 0 chr11 144059504 144059540 -4723932 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 279 0 0 0 chr11 144060889 144060920 -4722552 + (TG)n Simple_repeat Simple_repeat 1 31 0 1424 227 31 12 chr11 144062963 144063289 -4720183 + MLT2D LTR ERVL 82 413 -1 1276 136 190 39 chr11 144063521 144063779 -4719693 + AluSg SINE Alu 2 298 -2 569 167 0 111 chr11 144065314 144065353 -4718119 - L1MB7 LINE L1 -1939 4207 4165 2139 112 20 7 chr11 144065353 144065517 -4717955 - AluSq SINE Alu -14 299 128 198 0 0 0 chr11 144065517 144065539 -4717933 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 2139 112 20 7 chr11 144065539 144065669 -4717803 - AluSq SINE Alu -185 128 1 569 167 0 111 chr11 144065669 144065773 -4717699 - L1MB7 LINE L1 -1981 4165 4080 3082 194 145 106 chr11 144065773 144066559 -4716913 + L1MD3 LINE L1 6451 7205 -790 538 213 0 0 chr11 144066559 144066653 -4716819 + MLT1F1 LTR MaLR 1 94 -473 3082 194 145 106 chr11 144066653 144066832 -4716640 + L1MD3 LINE L1 7205 7376 -619 1780 171 17 7 chr11 144066832 144067130 -4716342 - AluJo SINE Alu -11 301 1 3082 194 145 106 chr11 144067130 144067244 -4716228 + L1MD3 LINE L1 7376 7670 -325 2731 192 94 48 chr11 144067243 144068180 -4715292 + L1MEc LINE L1 2090 3000 -3215 * 7524 36 9 0 chr11 144068180 144069550 -4713922 + L1PA5 LINE L1 4767 6154 0 239 279 38 13 chr11 144069617 144069696 -4713776 - L2 LINE L2 -4 3268 3188 480 268 110 31 chr11 144069969 144070197 -4713275 + MIR SINE MIR 9 254 -8 2108 128 0 3 chr11 144070364 144070661 -4712811 + AluSx SINE Alu 1 296 -16 2059 62 8 4 chr11 144071349 144071608 -4711864 + AluY SINE Alu 40 299 -12 2400 200 53 90 chr11 144071881 144072705 -4710767 - L1ME1 LINE L1 -8 6227 5434 721 192 6 110 chr11 144072706 144072758 -4710714 - MER58A DNA MER1_type -178 163 107 3097 108 26 2 chr11 144072758 144073212 -4710260 + MER4C LTR ERV1 1 465 0 721 192 6 110 chr11 144073212 144073341 -4710131 - MER58A DNA MER1_type -234 107 1 2707 195 62 111 chr11 144073353 144073480 -4709992 - L1ME1 LINE L1 -1926 4289 4157 1936 121 0 17 chr11 144073480 144073770 -4709702 + AluSx SINE Alu 1 285 -27 2707 195 62 111 chr11 144073770 144074849 -4708623 - L1ME1 LINE L1 -2058 4157 3142 1061 209 5 0 chr11 144074855 144075075 -4708397 - AluJo SINE Alu -5 307 87 2908 194 88 66 chr11 144075075 144075261 -4708211 - L1ME1 LINE L1 -3058 3157 2977 7471 37 18 2 chr11 144075261 144076623 -4706849 - L1PA5 LINE L1 -14 6140 4767 2908 194 88 66 chr11 144076623 144077557 -4705915 - L1ME1 LINE L1 -3238 2977 2090 1503 171 181 157 chr11 144077556 144077670 -4705802 - L1MD3 LINE L1 -325 7670 7560 * 1658 171 17 7 chr11 144077670 144077968 -4705504 + AluJo SINE Alu 1 301 -11 1503 171 181 157 chr11 144077968 144078147 -4705325 - L1MD3 LINE L1 -435 7560 7387 537 213 0 0 chr11 144078147 144078241 -4705231 - MLT1F1 LTR MaLR -473 94 1 1503 171 181 157 chr11 144078241 144078590 -4704882 - L1MD3 LINE L1 -608 7387 6917 637 253 72 13 chr11 144078611 144078848 -4704624 - L1M4 LINE L1 -3124 3022 2772 2249 76 3 0 chr11 144078968 144079259 -4704213 - AluY SINE Alu -19 292 1 324 0 0 0 chr11 144080429 144080465 -4703007 + (CA)n Simple_repeat Simple_repeat 2 37 0 529 254 104 21 chr11 144085488 144085681 -4697791 + MIR SINE MIR 46 254 -8 4160 148 39 7 chr11 144090021 144090772 -4692700 - L1MA4 LINE L1 -14 6286 5512 576 106 0 0 chr11 144091600 144091685 -4691787 + L1PA12 LINE L1 6083 6167 -1 268 237 103 21 chr11 144094202 144094299 -4689173 - L2 LINE L2 0 3313 3209 260 252 139 33 chr11 144094678 144094829 -4688643 - L1ME1 LINE L1 -7 6159 5993 2135 99 0 7 chr11 144094886 144095190 -4688282 + AluY SINE Alu 1 302 -9 1349 84 0 0 chr11 144095191 144095370 -4688102 + AluY SINE Alu 133 311 0 973 163 261 0 chr11 144104227 144104472 -4679000 + AluJb SINE Alu 1 309 -3 1361 78 0 0 chr11 144105278 144105458 -4678014 + AluSg/x SINE Alu 131 310 -2 1692 162 31 3 chr11 144105586 144105876 -4677596 + AluJo SINE Alu 9 306 -6 1790 193 77 3 chr11 144105937 144105954 -4677518 + L1MA5 LINE L1 5883 5897 -403 219 69 0 0 chr11 144105954 144105983 -4677489 + (CATATA)n Simple_repeat Simple_repeat 4 32 0 1790 193 77 3 chr11 144105983 144106354 -4677118 + L1MA5 LINE L1 5897 6300 0 213 326 102 10 chr11 144108319 144108417 -4675055 - MIR SINE MIR -62 146 40 279 0 0 0 chr11 144109352 144109383 -4674089 + (TTTC)n Simple_repeat Simple_repeat 3 33 0 187 360 0 0 chr11 144109685 144109735 -4673737 + L2 LINE L2 3193 3242 -30 485 288 0 8 chr11 144110599 144110724 -4672748 + MER94 DNA DNA 1 124 -10 259 266 121 50 chr11 144110726 144111049 -4672423 - L1ME4a LINE L1 -88 6033 5688 920 308 152 21 chr11 144113673 144114244 -4669228 - L3 LINE CR1 -59 1518 873 259 254 17 0 chr11 144114651 144114710 -4668762 + MIR SINE MIR 38 97 -111 2116 96 4 0 chr11 144114777 144115057 -4668415 + AluSx SINE Alu 18 298 -14 360 0 0 0 chr11 144116282 144116322 -4667150 + (CA)n Simple_repeat Simple_repeat 2 41 0 1223 35 0 0 chr11 144117378 144117521 -4665951 - AluY SINE Alu -11 300 158 1471 168 3 56 chr11 144117681 144117984 -4665488 - AluJo SINE Alu -25 287 1 29 70 0 0 chr11 144118414 144118471 -4665001 + AT_rich Low_complexity Low_complexity 1 57 0 294 312 113 27 chr11 144119184 144119370 -4664102 + L2 LINE L2 3070 3271 -1 1299 168 105 32 chr11 144119435 144119504 -4663968 + MLT1B LTR MaLR 85 147 -243 6045 79 37 16 chr11 144119504 144120313 -4663159 + LTR12 LTR ERV1 1 826 0 1299 168 105 32 chr11 144120313 144120528 -4662944 + MLT1B LTR MaLR 147 390 0 234 257 86 9 chr11 144120642 144120747 -4662725 - L1M4c LINE L1 -2828 3554 3442 534 252 113 26 chr11 144120815 144121045 -4662427 - L1M4c LINE L1 -3058 3324 3075 282 219 108 61 chr11 144121221 144121601 -4661871 - L1M4c LINE L1 -3714 2668 2271 1665 160 38 0 chr11 144121963 144122226 -4661246 - AluJb SINE Alu -17 295 23 325 185 109 11 chr11 144122889 144122981 -4660491 + L1ME3A LINE L1 6065 6165 -5 1499 147 159 34 chr11 144123210 144123530 -4659942 - MER46B DNA MER2_type -1 235 1 243 241 63 13 chr11 144123547 144123626 -4659846 - MIR3 SINE MIR -41 167 85 2108 128 0 3 chr11 144124942 144125230 -4658242 + AluSx SINE Alu 1 287 -25 201 282 39 13 chr11 144126491 144126569 -4656903 + MIR SINE MIR 148 227 -35 1653 168 17 27 chr11 144126578 144126870 -4656602 - AluJo SINE Alu -23 289 1 642 177 152 25 chr11 144126874 144127072 -4656400 - Charlie1b DNA MER1_type -28 495 273 671 213 8 0 chr11 144127072 144127199 -4656273 + FLAM_A SINE Alu 1 128 -14 735 169 150 115 chr11 144127199 144127459 -4656013 - Charlie1b DNA MER1_type -253 270 2 2644 207 56 67 chr11 144127481 144127833 -4655639 + L1MB7 LINE L1 3154 3508 -2638 2252 112 3 6 chr11 144127833 144128147 -4655325 + AluSq SINE Alu 1 313 0 2644 207 56 67 chr11 144128147 144128375 -4655097 + L1MB7 LINE L1 3508 3737 -2409 2176 156 71 29 chr11 144128375 144128745 -4654727 + MSTA LTR MaLR 2 392 -36 2337 119 0 0 chr11 144128745 144129048 -4654424 - AluSx SINE Alu -9 303 1 2176 156 71 29 chr11 144129048 144129087 -4654385 + MSTA LTR MaLR 392 428 0 2644 207 56 67 chr11 144129087 144129480 -4653992 + L1MB7 LINE L1 3737 4118 -2028 2832 124 36 13 chr11 144129492 144130080 -4653392 + MER4B LTR ERV1 1 779 0 2138 208 52 24 chr11 144130083 144130666 -4652806 + L1MB7 LINE L1 4147 4745 -1401 975 250 66 0 chr11 144130915 144131143 -4652329 + Tigger5 DNA MER2_type 28 270 -2053 452 235 210 6 chr11 144131139 144131301 -4652171 + MER34B LTR ERV1 370 564 -1 * 4466 181 40 28 chr11 144131302 144132497 -4650975 + L1MB7 LINE L1 4743 5958 -226 2181 81 10 13 chr11 144132497 144132795 -4650677 - AluSc SINE Alu -12 297 1 4466 181 40 28 chr11 144132795 144133008 -4650464 + L1MB7 LINE L1 5958 6167 -17 1817 132 26 43 chr11 144133856 144134160 -4649312 - AluJo SINE Alu -13 299 1 256 94 109 16 chr11 144135934 144135998 -4647474 + L1MC5 LINE L1 7584 7653 -308 340 214 137 95 chr11 144136001 144136169 -4647303 + L1MC5 LINE L1 7742 7916 -45 183 42 0 0 chr11 144136289 144136313 -4647159 + (CA)n Simple_repeat Simple_repeat 1 24 0 2199 81 17 7 chr11 144136850 144137148 -4646324 - AluSq SINE Alu -12 301 1 193 279 0 73 chr11 144138644 144138712 -4644760 - L2 LINE L2 0 3272 3210 26 30 0 0 chr11 144138736 144138769 -4644703 + AT_rich Low_complexity Low_complexity 1 33 0 2370 83 10 3 chr11 144138937 144139239 -4644233 + AluSc SINE Alu 1 304 -5 275 328 40 34 chr11 144139418 144139595 -4643877 - MIR SINE MIR -37 225 48 199 333 62 0 chr11 144141067 144141163 -4642309 + MIR3 SINE MIR 85 186 -22 2084 133 17 3 chr11 144141248 144141550 -4641922 + AluSx SINE Alu 1 306 -6 766 327 97 32 chr11 144142115 144142834 -4640638 + L1MEc LINE L1 32 797 -5599 890 171 0 0 chr11 144142836 144142965 -4640507 + FLAM_C SINE Alu 1 129 -14 776 263 161 21 chr11 144142983 144143698 -4639774 + L1MEc LINE L1 789 1751 -4645 315 0 0 0 chr11 144143846 144143881 -4639591 + (TG)n Simple_repeat Simple_repeat 2 36 0 1567 127 51 44 chr11 144143887 144144162 -4639310 - AluSx SINE Alu -35 277 1 6214 241 140 19 chr11 144144165 144144516 -4638956 + L1MEc LINE L1 1962 2269 -3946 1472 147 53 91 chr11 144144516 144144798 -4638674 + AluJo SINE Alu 1 271 -41 2108 116 14 7 chr11 144144798 144145090 -4638382 - AluSx SINE Alu -18 294 1 1472 147 53 91 chr11 144145090 144145126 -4638346 + AluJo SINE Alu 271 307 -5 6214 241 140 19 chr11 144145126 144147333 -4636139 + L1MEc LINE L1 2269 4769 -1446 1934 151 3 3 chr11 144149291 144149583 -4633889 + AluJo SINE Alu 3 294 -18 244 345 109 9 chr11 144149907 144150127 -4633345 + L2 LINE L2 2259 2500 -814 315 237 13 13 chr11 144150413 144150489 -4632983 + MIR SINE MIR 157 232 -30 25 0 0 0 chr11 144151157 144151182 -4632290 + AT_rich Low_complexity Low_complexity 1 25 0 2321 85 7 7 chr11 144151272 144151565 -4631907 - AluSg1 SINE Alu -16 293 1 826 181 0 0 chr11 144151659 144151792 -4631680 - FLAM_C SINE Alu 0 133 1 1145 76 45 0 chr11 144152853 144153010 -4630462 - L1PA7 LINE L1 0 6154 5991 386 125 56 0 chr11 144153565 144153637 -4629835 + MER21B LTR ERV1 787 862 -1 421 262 48 36 chr11 144154367 144154535 -4628937 - MIR SINE MIR -73 189 20 23 68 0 0 chr11 144155221 144155265 -4628207 + GC_rich Low_complexity Low_complexity 1 44 0 1662 161 19 41 chr11 144157590 144157907 -4625565 + AluJo SINE Alu 2 311 -1 643 229 53 0 chr11 144158553 144158684 -4624788 - MER20 DNA MER1_type -77 142 5 262 325 144 56 chr11 144160449 144160487 -4622985 + L2 LINE L2 2171 2204 -1110 1752 160 26 23 chr11 144160487 144160793 -4622679 - AluJo SINE Alu -5 307 1 262 325 144 56 chr11 144160793 144161401 -4622071 + L2 LINE L2 2204 2874 -440 472 254 108 97 chr11 144161482 144161770 -4621702 + L2 LINE L2 2978 3268 -4 211 128 0 26 chr11 144161806 144161845 -4621627 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 2291 105 0 0 chr11 144163039 144163333 -4620139 - AluSg SINE Alu -16 294 1 2337 89 0 10 chr11 144164909 144165212 -4618260 + AluY SINE Alu 1 300 -11 645 250 50 0 chr11 144165440 144165620 -4617852 + MER5A DNA MER1_type 1 189 0 317 315 7 28 chr11 144165699 144165842 -4617630 - MIR SINE MIR -7 255 116 304 282 75 27 chr11 144165823 144166010 -4617462 + MIR3 SINE MIR 12 198 -53 * 1434 216 118 0 chr11 144166647 144166994 -4616478 + MER63B DNA MER1_type 3 390 -46 200 219 158 53 chr11 144167021 144167135 -4616337 + MIR3 SINE MIR 31 156 -52 479 147 295 0 chr11 144167534 144167629 -4615843 + FLAM_C SINE Alu 9 131 -12 22 35 0 0 chr11 144167629 144167658 -4615814 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr11 144167781 144167803 -4615669 + AT_rich Low_complexity Low_complexity 1 22 0 3481 156 18 10 chr11 144167854 144168462 -4615010 + L1MB3 LINE L1 5571 6183 0 220 247 0 72 chr11 144169191 144169288 -4614184 - L2 LINE L2 -1373 1941 1852 399 226 75 42 chr11 144169531 144169680 -4613792 + MER5B DNA MER1_type 23 162 -16 2620 52 0 0 chr11 144170055 144170365 -4613107 - AluY SINE Alu -1 310 1 28 71 0 0 chr11 144170419 144170475 -4612997 + AT_rich Low_complexity Low_complexity 1 56 0 303 198 324 0 chr11 144170804 144170915 -4612557 + L2 LINE L2 3122 3268 -4 1165 219 70 4 chr11 144172110 144172238 -4611234 - AluJb SINE Alu -54 258 140 477 62 0 0 chr11 144172238 144172303 -4611169 + (TG)n Simple_repeat Simple_repeat 2 66 0 1165 219 70 4 chr11 144172303 144172416 -4611056 - AluJb SINE Alu -172 140 1 300 306 74 0 chr11 144173278 144173386 -4610086 + MIR3 SINE MIR 45 160 -48 214 349 62 62 chr11 144173723 144173915 -4609557 + MIR3 SINE MIR 6 197 -11 424 313 39 22 chr11 144175812 144175991 -4607481 - MIR3 SINE MIR -18 190 9 212 300 160 10 chr11 144180066 144180166 -4603306 - L2 LINE L2 -2 3311 3197 * 316 210 25 49 chr11 144180147 144180228 -4603244 - MIR SINE MIR -59 149 71 880 234 67 5 chr11 144182215 144182424 -4601048 + MER58A DNA MER1_type 3 224 0 356 225 188 31 chr11 144182827 144182987 -4600485 + MIR SINE MIR 2 186 -76 331 210 110 20 chr11 144183111 144183211 -4600261 + MIR SINE MIR 154 262 0 194 257 54 14 chr11 144183211 144183285 -4600187 + L2 LINE L2 2837 2913 -400 209 258 16 32 chr11 144183347 144183409 -4600063 + L2 LINE L2 3245 3305 -8 212 301 32 65 chr11 144183506 144183599 -4599873 - MIR SINE MIR -165 97 8 199 274 0 32 chr11 144183922 144183984 -4599488 + L2 LINE L2 3000 3059 -213 29 0 0 0 chr11 144185963 144185992 -4597480 + AT_rich Low_complexity Low_complexity 1 29 0 2160 120 7 3 chr11 144186611 144186910 -4596562 - AluSx SINE Alu -12 300 1 225 323 57 32 chr11 144187175 144187299 -4596173 - MIR SINE MIR -116 146 20 2338 115 0 3 chr11 144187376 144187681 -4595791 - AluSx SINE Alu -8 304 1 2392 82 3 0 chr11 144188866 144189170 -4594302 + AluY SINE Alu 1 305 -6 2259 112 0 7 chr11 144189320 144189624 -4593848 - AluSg SINE Alu -8 302 1 207 304 9 35 chr11 144189859 144189974 -4593498 + CT-rich Low_complexity Low_complexity 2 113 0 802 251 22 0 chr11 144194814 144194993 -4588479 - MER5A DNA MER1_type -6 183 1 1916 149 10 3 chr11 144195536 144195832 -4587640 + AluSx SINE Alu 1 298 -14 1131 123 25 0 chr11 144195848 144196011 -4587461 + AluSg/x SINE Alu 140 306 -6 442 263 188 11 chr11 144196011 144196197 -4587275 - L1ME4a LINE L1 -86 6035 5817 2325 119 0 0 chr11 144197438 144197750 -4585722 - AluSx SINE Alu 0 312 1 911 207 0 6 chr11 144198100 144198264 -4585208 + FRAM SINE Alu 1 163 -13 198 0 0 0 chr11 144199297 144199319 -4584153 + (CA)n Simple_repeat Simple_repeat 1 22 0 233 261 0 72 chr11 144199575 144199644 -4583828 + MIR SINE MIR 28 91 -171 2300 153 58 7 chr11 144199644 144200076 -4583396 - LOR1b LTR ERV1 0 461 8 322 285 83 7 chr11 144200090 144200234 -4583238 + MIR SINE MIR 87 241 -21 253 267 0 13 chr11 144200367 144200442 -4583030 + MLT1I LTR MaLR 3 76 -333 * 416 175 12 205 chr11 144200436 144200530 -4582942 - MER69 DNA AcHobo -2384 142 94 1976 146 0 7 chr11 144200530 144200817 -4582655 + AluJo SINE Alu 18 302 -10 416 175 12 205 chr11 144200817 144200893 -4582579 - MER69 DNA AcHobo -2432 94 5 2366 90 0 0 chr11 144200925 144201214 -4582258 - AluSc SINE Alu -20 289 1 232 209 179 15 chr11 144202479 144202546 -4580926 + L2 LINE L2 3194 3271 -1 2376 102 0 6 chr11 144202648 144202961 -4580511 + AluSx SINE Alu 1 311 -1 386 264 59 0 chr11 144202981 144203147 -4580325 + L1MD2 LINE L1 5874 6057 -185 1059 175 6 0 chr11 144203569 144203735 -4579737 + AluJb SINE Alu 1 167 -145 296 95 0 0 chr11 144203735 144203777 -4579695 - Alu SINE Alu -266 42 1 587 273 98 31 chr11 144204066 144204260 -4579212 + MIR SINE MIR 53 259 -3 30 27 0 0 chr11 144205665 144205702 -4577770 + AT_rich Low_complexity Low_complexity 1 37 0 1972 276 32 17 chr11 144206128 144206845 -4576627 + L1M4 LINE L1 3982 4709 -1437 22 70 0 0 chr11 144208322 144208365 -4575107 + GC_rich Low_complexity Low_complexity 1 43 0 1386 160 0 30 chr11 144209764 144210001 -4573471 - AluJb SINE Alu -19 293 64 424 278 31 12 chr11 144210095 144210257 -4573215 - LTR41 LTR ERVL -598 175 11 1395 326 63 73 chr11 144210276 144210832 -4572640 - L1M4 LINE L1 -2192 3954 3394 2477 84 3 0 chr11 144210832 144211143 -4572329 - AluSx SINE Alu 0 312 1 1395 326 63 73 chr11 144211143 144211645 -4571827 - L1M4 LINE L1 -2752 3394 2914 216 0 0 0 chr11 144211645 144211669 -4571803 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1395 326 63 73 chr11 144211669 144212132 -4571340 - L1M4 LINE L1 -3232 2914 2448 2377 84 0 3 chr11 144214544 144214840 -4568632 - AluSq SINE Alu -18 295 1 300 218 129 123 chr11 144215854 144215924 -4567548 - L1MC/D LINE L1 -1986 5822 5754 2048 152 3 7 chr11 144215924 144216234 -4567238 + AluSx SINE Alu 3 311 -1 300 218 129 123 chr11 144216234 144216333 -4567139 - L1MC/D LINE L1 -2054 5754 5652 189 0 0 0 chr11 144216401 144216422 -4567050 + (T)n Simple_repeat Simple_repeat 1 21 0 2335 43 11 0 chr11 144216603 144216879 -4566593 - AluY SINE Alu -32 279 1 1910 135 17 10 chr11 144216905 144217202 -4566270 + AluSq SINE Alu 1 299 -14 2429 84 0 0 chr11 144218233 144218531 -4564941 - AluY SINE Alu -9 302 5 1812 140 49 0 chr11 144218811 144219097 -4564375 + AluJo SINE Alu 1 300 -12 2272 128 0 0 chr11 144219211 144219516 -4563956 - AluSx SINE Alu -7 305 1 2542 55 0 3 chr11 144219801 144220112 -4563360 + AluY SINE Alu 1 310 -1 2393 64 0 3 chr11 144220185 144220482 -4562990 + AluY SINE Alu 1 296 -15 22 35 0 0 chr11 144220740 144220769 -4562703 + AT_rich Low_complexity Low_complexity 1 29 0 2317 144 16 128 chr11 144222307 144222793 -4560679 - Tigger2 DNA MER2_type -2 2716 1 2152 125 3 25 chr11 144223597 144223916 -4559556 + AluSx SINE Alu 1 312 0 1470 219 14 38 chr11 144224451 144224580 -4558892 + MER2 DNA MER2_type 2 132 -212 1561 149 137 0 chr11 144224580 144224842 -4558630 - AluSx SINE Alu -14 298 1 1470 219 14 38 chr11 144224842 144224998 -4558474 + MER2 DNA MER2_type 132 280 -64 1820 166 0 19 chr11 144224998 144225312 -4558160 + AluJo SINE Alu 1 308 -4 1470 219 14 38 chr11 144225312 144225372 -4558100 + MER2 DNA MER2_type 280 340 -4 2332 96 0 22 chr11 144227325 144227638 -4555834 - AluSq SINE Alu -5 308 3 923 261 129 18 chr11 144227781 144228114 -4555358 - L1MB8 LINE L1 -3 6244 5875 4264 270 52 30 chr11 144228168 144229354 -4554118 - L1MB8 LINE L1 -2262 3953 2747 6821 13 1 0 chr11 144229354 144230152 -4553320 + L1PA3 LINE L1 5382 6180 0 4264 270 52 30 chr11 144230152 144230821 -4552651 - L1MB8 LINE L1 -3468 2747 2094 2475 87 3 0 chr11 144230866 144231175 -4552297 + AluSx SINE Alu 1 310 -2 31 0 0 0 chr11 144231184 144231215 -4552257 + AT_rich Low_complexity Low_complexity 1 31 0 817 211 92 9 chr11 144231284 144231512 -4551960 - L1MCc LINE L1 -4832 2109 1863 * 1170 219 10 24 chr11 144231507 144231758 -4551714 + L1M4 LINE L1 3540 3788 -2358 2776 82 3 0 chr11 144231758 144232112 -4551360 + THE1A LTR MaLR 1 355 0 1170 219 10 24 chr11 144232112 144232157 -4551315 + L1M4 LINE L1 3788 3832 -2314 * 1616 240 83 18 chr11 144232155 144233115 -4550357 - L1MCc LINE L1 -4888 1535 815 1788 132 5 18 chr11 144233345 144233622 -4549850 - MLT1B LTR MaLR 0 390 128 2574 47 0 7 chr11 144233622 144233921 -4549551 - AluY SINE Alu -14 297 1 1788 132 5 18 chr11 144233921 144233944 -4549528 - MLT1B LTR MaLR -262 128 106 1255 208 20 37 chr11 144233939 144234233 -4549239 - MLT1B LTR MaLR -101 289 1 * 336 283 76 37 chr11 144234245 144234580 -4548892 - L1MCc LINE L1 -5669 753 63 417 274 115 29 chr11 144234624 144235040 -4548432 - L1MEd LINE L1 -2697 3432 2981 314 204 153 22 chr11 144235107 144235244 -4548228 - L1MEd LINE L1 -3236 2893 2739 600 295 81 39 chr11 144235256 144236028 -4547444 - L1MC4 LINE L1 -831 7062 6161 * 641 265 65 76 chr11 144236018 144236664 -4546808 - L1MEd LINE L1 -3398 2731 2093 231 273 30 10 chr11 144237481 144237580 -4545892 - L1MEd LINE L1 -5041 1078 978 22 35 0 0 chr11 144237685 144237714 -4545758 + AT_rich Low_complexity Low_complexity 1 29 0 1264 279 146 38 chr11 144238866 144239850 -4543622 + HAL1 LINE L1 810 1900 -607 213 333 58 37 chr11 144240619 144240862 -4542610 - L2 LINE L2 -43 3270 3023 447 306 96 20 chr11 144240963 144241162 -4542310 + MIR SINE MIR 15 228 -34 662 117 8 0 chr11 144241360 144241480 -4541992 + (CCA)n Simple_repeat Simple_repeat 1 121 0 442 286 28 39 chr11 144241501 144241679 -4541793 - MIR SINE MIR -30 232 57 735 210 87 10 chr11 144242111 144242306 -4541166 + MER6B DNA MER2_type 1 210 0 1564 90 80 0 chr11 144242900 144243112 -4540360 + MER30 DNA MER1_type 2 230 0 232 287 116 44 chr11 144243571 144243752 -4539720 + MIR SINE MIR 53 246 -16 1853 145 3 3 chr11 144244586 144244876 -4538596 - AluJo SINE Alu -18 294 5 718 266 75 12 chr11 144247794 144248046 -4535426 - L1ME3A LINE L1 -173 6233 5966 694 298 109 16 chr11 144248104 144248751 -4534721 - L1ME3A LINE L1 -2469 3913 3197 856 216 96 14 chr11 144248760 144248978 -4534494 - L1MB5 LINE L1 -9 6165 5930 1290 200 31 14 chr11 144249866 144250156 -4533316 - L1ME3A LINE L1 -4573 1811 1517 913 266 61 20 chr11 144250153 144250911 -4532561 - L1MEc LINE L1 -3167 3048 2272 * 2386 88 0 0 chr11 144251741 144252038 -4531434 - AluY SINE Alu -14 297 1 263 28 28 0 chr11 144252468 144252504 -4530968 + (TC)n Simple_repeat Simple_repeat 2 38 0 * 399 127 0 0 chr11 144252503 144252566 -4530906 + (TG)n Simple_repeat Simple_repeat 2 64 0 201 147 28 0 chr11 144253295 144253335 -4530137 - MIR SINE MIR -65 143 107 264 253 43 44 chr11 144253437 144253603 -4529869 + L1MDa LINE L1 1841 2001 -900 513 232 179 0 chr11 144253612 144253780 -4529692 - MER105 DNA DNA 0 204 7 647 283 73 40 chr11 144254137 144254220 -4529252 + L1MDa LINE L1 2441 2520 -4020 4142 45 0 0 chr11 144254220 144254713 -4528759 + L1PA5 LINE L1 5659 6151 -3 647 283 73 40 chr11 144254713 144255134 -4528338 + L1MDa LINE L1 2520 2918 -3622 4152 165 12 31 chr11 144255177 144255946 -4527526 - L1MB7 LINE L1 -20 6164 5411 935 132 0 0 chr11 144256023 144256152 -4527320 + AluSx SINE Alu 1 129 -183 327 49 0 0 chr11 144256164 144256205 -4527267 + (CA)n Simple_repeat Simple_repeat 1 41 0 1260 74 6 0 chr11 144256205 144256367 -4527105 + AluSx SINE Alu 130 292 -18 37 90 0 0 chr11 144257658 144257758 -4525714 + AT_rich Low_complexity Low_complexity 1 100 0 1612 155 8 0 chr11 144258030 144258281 -4525191 + MER2 DNA MER2_type 1 253 -92 1607 104 0 63 chr11 144258308 144258482 -4524990 - L1MA3 LINE L1 -1 6304 6151 2078 85 33 0 chr11 144258482 144258752 -4524720 - AluSg SINE Alu -31 279 1 1607 104 0 63 chr11 144258752 144258847 -4524625 - L1MA3 LINE L1 -154 6151 6052 459 118 26 0 chr11 144258858 144258934 -4524538 - L1MA3 LINE L1 -222 6083 6006 418 194 0 0 chr11 144258941 144259013 -4524459 + MER2 DNA MER2_type 267 338 -7 1295 251 212 51 chr11 144259140 144259384 -4524088 + L2 LINE L2 1514 1717 -1596 2321 114 0 0 chr11 144259384 144259691 -4523781 - AluSq SINE Alu -6 307 1 1295 251 212 51 chr11 144259691 144260748 -4522724 + L2 LINE L2 1717 3052 -261 769 120 0 0 chr11 144260795 144260903 -4522569 - AluSx SINE Alu -11 299 192 1095 113 0 0 chr11 144260904 144261045 -4522427 - AluSx SINE Alu -172 141 1 277 330 24 63 chr11 144261047 144261253 -4522219 + L2 LINE L2 3103 3300 -13 225 356 48 0 chr11 144261724 144261828 -4521644 - L3 LINE CR1 -1058 519 411 180 0 0 0 chr11 144262386 144262406 -4521066 + (T)n Simple_repeat Simple_repeat 1 20 0 24 0 0 0 chr11 144264064 144264088 -4519384 + AT_rich Low_complexity Low_complexity 1 24 0 412 235 32 70 chr11 144264103 144264441 -4519031 - L1MC3 LINE L1 -45 6121 5826 459 216 226 35 chr11 144266032 144266231 -4517241 - L1MC3 LINE L1 -1997 5811 5575 236 259 0 17 chr11 144269375 144269433 -4514039 - MER5A DNA MER1_type -80 109 53 195 129 0 0 chr11 144269892 144269923 -4513549 + (TG)n Simple_repeat Simple_repeat 2 32 0 1195 194 153 3 chr11 144270273 144270567 -4512905 - MER58B DNA MER1_type -3 338 1 190 359 14 24 chr11 144270895 144271064 -4512408 - MIR SINE MIR -63 145 18 2143 120 0 0 chr11 144372707 144373007 -4410465 + AluSx SINE Alu 1 300 -12 1676 140 49 0 chr11 144373126 144373412 -4410060 - AluJo SINE Alu -12 300 1 2276 84 0 0 chr11 144373692 144373989 -4409483 + AluY SINE Alu 5 301 -10 436 293 47 9 chr11 144374251 144374357 -4409115 + L2 LINE L2 3159 3268 -4 322 247 0 0 chr11 144374372 144374445 -4409027 - L1ME LINE L1 -370 5751 5679 327 303 110 63 chr11 144374453 144374753 -4408719 - L1ME LINE L1 -484 5637 5324 2063 151 70 22 chr11 144374763 144375175 -4408297 - MSTB1 LTR MaLR 0 432 1 945 66 0 84 chr11 144375330 144375497 -4407975 + L1P LINE L1 5256 5408 -757 308 360 41 41 chr11 144375769 144376011 -4407461 - L1ME LINE L1 -1373 4773 4532 279 296 25 0 chr11 144376415 144376496 -4406976 + MIR3 SINE MIR 104 186 -22 396 306 224 7 chr11 144377115 144377310 -4406162 + MIR SINE MIR 19 256 -6 190 303 135 0 chr11 144377378 144377467 -4406005 + MIR SINE MIR 54 154 -108 288 254 191 37 chr11 144378025 144378214 -4405258 + L2 LINE L2 3030 3247 -25 357 292 15 39 chr11 144380010 144380140 -4403332 - MIR3 SINE MIR -9 199 73 293 277 79 10 chr11 144381334 144381435 -4402037 + MER5A DNA MER1_type 63 170 -19 258 280 40 10 chr11 144381715 144381815 -4401657 - MLT1H LTR MaLR -339 210 108 472 301 36 17 chr11 144383104 144383403 -4400069 - L1MEd LINE L1 -1154 1336 948 385 261 176 21 chr11 144383839 144384027 -4399445 + L2 LINE L2 2282 2498 -816 452 230 0 0 chr11 144384167 144384254 -4399218 - L2 LINE L2 0 3313 3227 381 296 41 65 chr11 144384689 144384858 -4398614 + MIR3 SINE MIR 39 203 -5 279 284 0 12 chr11 144384975 144385056 -4398416 + MER5A DNA MER1_type 4 83 -106 667 288 48 22 chr11 144385159 144385388 -4398084 + L3 LINE CR1 1340 1574 -3 268 345 14 20 chr11 144386332 144386480 -4396992 + G-rich Low_complexity Low_complexity 6 152 0 * 434 267 0 92 chr11 144386397 144386592 -4396880 + (ATGGTG)n Simple_repeat Simple_repeat 4 180 0 190 302 19 0 chr11 144387690 144387743 -4395729 + L2 LINE L2 3218 3271 -1 342 0 0 0 chr11 144387861 144387899 -4395573 + (TC)n Simple_repeat Simple_repeat 2 39 0 342 0 0 0 chr11 144387898 144387936 -4395536 + (TG)n Simple_repeat Simple_repeat 1 38 0 290 344 114 0 chr11 144387952 144388083 -4395389 - MER117 DNA MER1_type -49 148 3 263 250 53 0 chr11 144389674 144389750 -4393722 + L2 LINE L2 3193 3272 0 464 305 31 0 chr11 144390340 144390468 -4393004 + MIR SINE MIR 22 153 -109 374 272 12 0 chr11 144390601 144390682 -4392790 + L2 LINE L2 3190 3271 -1 245 357 6 22 chr11 144392354 144392536 -4390936 + (TG)n Simple_repeat Simple_repeat 2 180 0 256 320 30 10 chr11 144392951 144393051 -4390421 + MIR3 SINE MIR 106 207 -1 259 282 27 36 chr11 144393316 144393426 -4390046 + L3b LINE CR1 1305 1413 -170 2242 43 4 4 chr11 144394864 144395140 -4388332 + AluY SINE Alu 29 304 -7 268 358 46 0 chr11 144395700 144395809 -4387663 + L3 LINE CR1 411 524 -1053 345 330 24 63 chr11 144396275 144396481 -4386991 - L2 LINE L2 -13 3300 3103 780 116 0 2 chr11 144396483 144396735 -4386737 + AluSx SINE Alu 1 301 -9 1736 252 218 51 chr11 144396737 144397839 -4385633 - L2 LINE L2 -200 3113 1716 2193 114 0 0 chr11 144397839 144398146 -4385326 + AluSq SINE Alu 1 307 -6 1736 252 218 51 chr11 144398146 144398390 -4385082 - L2 LINE L2 -1597 1716 1514 413 194 0 0 chr11 144398517 144398589 -4384883 - MER2 DNA MER2_type -7 338 267 454 118 26 0 chr11 144398596 144398672 -4384800 + L1MA3 LINE L1 6006 6083 -222 1586 104 0 63 chr11 144398683 144398778 -4384694 + L1MA3 LINE L1 6052 6151 -154 1955 85 33 0 chr11 144398778 144399048 -4384424 + AluSg SINE Alu 1 279 -31 1586 104 0 63 chr11 144399048 144399222 -4384250 + L1MA3 LINE L1 6151 6304 -1 1607 155 8 0 chr11 144399249 144399500 -4383972 - MER2 DNA MER2_type -92 253 1 37 90 0 0 chr11 144399772 144399872 -4383600 + AT_rich Low_complexity Low_complexity 1 100 0 1519 115 24 141 chr11 144401163 144401503 -4381969 - AluYb8 SINE Alu -8 300 1 4126 165 12 31 chr11 144401580 144402349 -4381123 + L1MB7 LINE L1 5411 6164 -20 619 287 70 39 chr11 144402392 144402814 -4380658 - L1MEc LINE L1 -3622 2593 2195 4125 47 0 0 chr11 144402814 144403308 -4380164 - L1PA5 LINE L1 -2 6152 5659 619 287 70 39 chr11 144403308 144403391 -4380081 - L1MEc LINE L1 -4020 2195 2116 537 237 172 0 chr11 144403748 144403917 -4379555 + MER105 DNA DNA 7 204 0 260 237 45 48 chr11 144403931 144404093 -4379379 - L1MEc LINE L1 -900 1676 1580 216 166 129 0 chr11 144404195 144404263 -4379209 + MIR SINE MIR 107 143 -65 381 131 0 0 chr11 144404964 144405025 -4378447 + (CA)n Simple_repeat Simple_repeat 2 62 0 245 29 29 0 chr11 144405024 144405058 -4378414 + (GA)n Simple_repeat Simple_repeat 2 36 0 * 389 323 56 6 chr11 144405273 144405434 -4378038 - L1ME4a LINE L1 -275 5846 5678 2255 88 0 0 chr11 144405488 144405785 -4377687 + AluY SINE Alu 1 297 -14 867 274 56 14 chr11 144406615 144407373 -4376099 + L1MEc LINE L1 2272 3048 -3167 * 1279 200 31 14 chr11 144407370 144407660 -4375812 + L1ME3A LINE L1 1517 1811 -4573 851 216 96 14 chr11 144408548 144408766 -4374706 + L1MB5 LINE L1 5930 6165 -9 656 301 109 16 chr11 144408775 144409422 -4374050 + L1ME3A LINE L1 3197 3913 -2469 706 266 75 12 chr11 144409480 144409732 -4373740 + L1ME3A LINE L1 5966 6233 -173 330 257 71 53 chr11 144409742 144409855 -4373617 + L1ME3A LINE L1 6288 6402 -4 195 349 127 24 chr11 144410548 144410674 -4372798 + MIR3 SINE MIR 37 175 -33 1748 153 3 3 chr11 144412650 144412951 -4370521 + AluJo SINE Alu 5 305 -7 321 282 116 44 chr11 144413774 144413955 -4369517 - MIR SINE MIR -16 246 53 1563 90 80 0 chr11 144414414 144414626 -4368846 - MER30 DNA MER1_type 0 230 2 717 210 87 10 chr11 144415220 144415415 -4368057 - MER6B DNA MER2_type 0 210 1 515 301 28 37 chr11 144415799 144416025 -4367447 + MIR SINE MIR 10 232 -30 1256 143 0 9 chr11 144416052 144416501 -4366971 + (TGG)n Simple_repeat Simple_repeat 1 445 0 526 306 96 20 chr11 144416667 144416866 -4366606 - MIR SINE MIR -34 228 15 322 343 59 42 chr11 144416967 144417253 -4366219 + L2 LINE L2 3023 3313 0 1212 279 146 38 chr11 144417979 144418963 -4364509 - HAL1 LINE L1 -607 1900 810 22 35 0 0 chr11 144420118 144420147 -4363325 + AT_rich Low_complexity Low_complexity 1 29 0 226 273 30 10 chr11 144420252 144420351 -4363121 + L1MEd LINE L1 1231 1331 -5041 362 313 198 10 chr11 144420388 144420580 -4362892 + L1MEd LINE L1 1265 1492 -4892 589 279 59 70 chr11 144421168 144421814 -4361658 + L1MEd LINE L1 2346 2984 -3398 535 321 75 30 chr11 144421800 144422610 -4360862 + L1MC4 LINE L1 6157 6977 -831 * 242 280 110 5 chr11 144422585 144422785 -4360687 + L1MEd LINE L1 2988 3208 -3174 * 378 300 102 17 chr11 144422788 144423208 -4360264 + L1MEd LINE L1 3230 3685 -2697 373 315 60 19 chr11 144423205 144423587 -4359885 + L1MCa LINE L1 52 753 -5669 * 1274 208 20 37 chr11 144423599 144423893 -4359579 + MLT1B LTR MaLR 1 289 -101 * 1736 134 5 17 chr11 144423888 144423911 -4359561 + MLT1B LTR MaLR 106 128 -262 2426 50 0 7 chr11 144423911 144424211 -4359261 + AluY SINE Alu 1 298 -13 1736 134 5 17 chr11 144424211 144424488 -4358984 + MLT1B LTR MaLR 128 390 0 1550 253 76 15 chr11 144424718 144425678 -4357794 + L1MCa LINE L1 815 1857 -4888 1087 219 10 24 chr11 144425676 144425721 -4357751 - L1M4 LINE L1 -2314 3832 3788 * 2802 82 3 0 chr11 144425721 144426075 -4357397 - THE1A LTR MaLR 0 355 1 1087 219 10 24 chr11 144426075 144426326 -4357146 - L1M4 LINE L1 -2358 3788 3540 741 247 81 4 chr11 144426321 144426568 -4356904 + L1MCa LINE L1 1863 2128 -4813 * 32 0 0 0 chr11 144426618 144426650 -4356822 + AT_rich Low_complexity Low_complexity 1 32 0 2364 90 3 0 chr11 144426657 144426968 -4356504 - AluSx SINE Alu 0 312 1 990 301 74 15 chr11 144426969 144427663 -4355809 + L1MCa LINE L1 2773 3488 -3453 6393 19 1 3 chr11 144427663 144428474 -4354998 - L1PA3 LINE L1 0 6155 5382 3301 259 38 20 chr11 144428473 144429660 -4353812 + L1MCa LINE L1 3472 4679 -2262 * 947 264 129 18 chr11 144429714 144430047 -4353425 + L1MB8 LINE L1 5806 6175 -3 2229 102 0 13 chr11 144430190 144430503 -4352969 + AluSq SINE Alu 3 311 -2 1537 222 14 38 chr11 144432489 144432549 -4350923 - MER2 DNA MER2_type -4 340 280 1728 175 0 13 chr11 144432549 144432863 -4350609 - AluJo SINE Alu -2 310 1 1537 222 14 38 chr11 144432863 144433019 -4350453 - MER2 DNA MER2_type -64 280 132 1494 144 137 0 chr11 144433019 144433282 -4350190 + AluSx SINE Alu 1 299 -13 1537 222 14 38 chr11 144433282 144433411 -4350061 - MER2 DNA MER2_type -212 132 2 2035 138 0 22 chr11 144433948 144434267 -4349205 - AluSx SINE Alu 0 312 1 2228 146 16 128 chr11 144435071 144435557 -4347915 + Tigger2 DNA MER2_type 1 2716 -2 22 35 0 0 chr11 144437095 144437124 -4346348 + AT_rich Low_complexity Low_complexity 1 29 0 2283 64 0 3 chr11 144437382 144437679 -4345793 - AluY SINE Alu -15 296 1 211 93 47 0 chr11 144438063 144438106 -4345366 + G-rich Low_complexity Low_complexity 3 47 0 232 151 0 27 chr11 144438202 144438275 -4345197 + C-rich Low_complexity Low_complexity 2 72 0 203 152 65 0 chr11 144438339 144438385 -4345087 + (CGGGG)n Simple_repeat Simple_repeat 2 50 0 30 0 0 0 chr11 144438565 144438595 -4344877 + GC_rich Low_complexity Low_complexity 1 30 0 315 0 0 0 chr11 144438657 144438692 -4344780 + (TG)n Simple_repeat Simple_repeat 1 35 0 21 36 0 0 chr11 144441276 144441304 -4342168 + AT_rich Low_complexity Low_complexity 1 28 0 205 314 0 29 chr11 144442551 144442621 -4340851 - L2 LINE L2 0 3272 3205 690 197 0 0 chr11 144443313 144443435 -4340037 - MER3 DNA MER1_type -82 127 6 653 234 137 0 chr11 144443583 144443758 -4339714 + MIR SINE MIR 7 205 -57 187 291 163 0 chr11 144444346 144444432 -4339040 + MIR SINE MIR 48 147 -61 199 277 0 0 chr11 144444649 144444696 -4338776 - MIR3 SINE MIR -50 158 112 853 176 0 35 chr11 144445974 144446144 -4337328 - L1MB2 LINE L1 -3 6168 6005 2396 49 0 0 chr11 144446144 144446410 -4337062 + L1PA4 LINE L1 5857 6140 -15 426 20 0 0 chr11 144446410 144446461 -4337011 + (TA)n Simple_repeat Simple_repeat 2 52 0 1431 178 17 11 chr11 144446467 144446774 -4336698 - L1MB3 LINE L1 -148 6035 5727 2138 117 0 0 chr11 144447516 144447814 -4335658 - AluSx SINE Alu -14 298 1 5223 157 36 8 chr11 144448696 144449898 -4333574 - L1PA16 LINE L1 -2 6164 4927 322 275 191 0 chr11 144449956 144450087 -4333385 - MIR SINE MIR -1 261 106 315 254 84 70 chr11 144451812 144451954 -4331518 + MIR SINE MIR 69 212 -50 301 237 114 15 chr11 144453772 144453903 -4329569 - MIR SINE MIR -14 248 105 1503 265 149 8 chr11 144454160 144454669 -4328803 + MLT1E LTR MaLR 1 581 -12 340 326 35 20 chr11 144456000 144456160 -4327312 + MIR SINE MIR 9 167 -62 243 307 10 50 chr11 144457432 144457533 -4325939 + L2 LINE L2 3176 3272 0 1603 173 10 14 chr11 144457779 144458068 -4325404 + AluJo SINE Alu 6 293 -19 465 316 77 0 chr11 144459646 144459814 -4323658 + MIR SINE MIR 34 214 -48 4507 145 40 4 chr11 144461245 144461969 -4321503 + L1PA16 LINE L1 5408 6157 -9 671 330 47 0 chr11 144462051 144462287 -4321185 - MIR SINE MIR -14 248 2 1509 232 34 88 chr11 144463094 144463651 -4319821 - MER74A LTR ERVL -31 527 1 190 402 0 0 chr11 144463873 144463960 -4319512 - MIR3 SINE MIR -115 93 7 622 250 56 22 chr11 144465253 144465433 -4318039 - MIR SINE MIR -32 230 45 226 341 104 6 chr11 144465616 144465789 -4317683 + L3 LINE CR1 775 964 -613 200 280 174 43 chr11 144465895 144466102 -4317370 + L3 LINE CR1 1129 1362 -215 222 333 0 0 chr11 144467991 144468138 -4315334 + (CA)n Simple_repeat Simple_repeat 1 147 0 291 241 211 23 chr11 144468960 144469093 -4314379 + MIR SINE MIR 4 161 -101 21 0 0 0 chr11 144471645 144471666 -4311806 + AT_rich Low_complexity Low_complexity 1 21 0 448 354 102 11 chr11 144471979 144472253 -4311219 - L2 LINE L2 0 3313 3015 737 322 172 12 chr11 144472441 144473047 -4310425 - L2 LINE L2 -547 2767 2065 1159 89 0 0 chr11 144477969 144478127 -4305345 + AluY SINE Alu 139 296 -15 485 130 0 0 chr11 144480901 144480970 -4302502 + AluJ/FLAM SINE Alu 2 70 -242 478 100 0 0 chr11 144480966 144481026 -4302446 + AluJ/FLAM SINE Alu 7 66 -246 * 1776 141 0 20 chr11 144481026 144481324 -4302148 + AluJo SINE Alu 7 298 -14 358 295 186 27 chr11 144482274 144482457 -4301015 + L1ME LINE L1 5320 5531 -590 244 228 13 25 chr11 144482891 144482970 -4300502 + L1ME4a LINE L1 6041 6118 -3 192 247 65 39 chr11 144483316 144483393 -4300079 + L2 LINE L2 2110 2188 -1126 300 284 0 23 chr11 144484517 144484605 -4298867 + MIR SINE MIR 163 248 -14 651 151 38 88 chr11 144484897 144485056 -4298416 - MIR SINE MIR -32 230 80 1931 153 0 10 chr11 144486334 144486641 -4296831 + AluSx SINE Alu 1 304 -8 267 188 10 109 chr11 144487200 144487301 -4296171 - MIR SINE MIR -82 126 36 219 222 0 0 chr11 144487632 144487677 -4295795 + (CCCCAG)n Simple_repeat Simple_repeat 4 48 0 379 281 208 16 chr11 144488212 144488404 -4295068 + HAL1 LINE L1 954 1182 -1325 1060 131 12 0 chr11 144489179 144489339 -4294133 - AluSq SINE Alu -19 294 133 2183 80 13 0 chr11 144489340 144489641 -4293831 - AluY SINE Alu -6 305 1 433 309 85 0 chr11 144489689 144489854 -4293618 + HAL1 LINE L1 2329 2507 0 577 329 168 6 chr11 144490628 144491115 -4292357 - L2 LINE L2 -369 2945 2380 270 335 117 16 chr11 144493430 144493618 -4289854 - MIR SINE MIR -13 249 43 504 265 179 0 chr11 144493665 144493816 -4289656 - MER5B DNA MER1_type 0 178 1 6646 219 64 49 chr11 144495047 144497088 -4286384 + L1MB3 LINE L1 777 2787 -3595 2000 123 0 20 chr11 144497088 144497388 -4286084 - AluSx SINE Alu -18 294 1 6646 219 64 49 chr11 144497388 144497567 -4285905 + L1MB3 LINE L1 2787 2962 -3420 2151 109 0 0 chr11 144497567 144497870 -4285602 + AluSq SINE Alu 1 303 -10 6646 219 64 49 chr11 144497870 144498870 -4284602 + L1MB3 LINE L1 2962 4120 -2262 2155 125 3 0 chr11 144498870 144499182 -4284290 + AluSq SINE Alu 1 313 0 6646 219 64 49 chr11 144499182 144499803 -4283669 + L1MB3 LINE L1 4120 4731 -1651 4692 190 14 8 chr11 144499794 144500672 -4282800 + L1M1 LINE L1 11 893 -6672 * 3898 182 48 1 chr11 144500685 144501470 -4282002 + L1MB3 LINE L1 5490 6311 -108 1650 213 15 6 chr11 144501480 144501813 -4281659 + MLT1A1 LTR MaLR 19 354 -11 636 204 0 0 chr11 144501820 144501933 -4281539 + L1MB3 LINE L1 6307 6419 0 25 31 0 0 chr11 144501948 144501980 -4281492 + AT_rich Low_complexity Low_complexity 1 32 0 929 158 57 17 chr11 144502159 144502336 -4281136 + MER53 DNA DNA 2 185 -4 21 0 0 0 chr11 144502484 144502505 -4280967 + AT_rich Low_complexity Low_complexity 1 21 0 2289 86 0 0 chr11 144504746 144505038 -4278434 + AluSg SINE Alu 1 292 -18 535 347 45 4 chr11 144506821 144507089 -4276383 + MARNA DNA Mariner 122 400 -186 30 0 0 0 chr11 144508059 144508089 -4275383 + GC_rich Low_complexity Low_complexity 1 30 0 279 353 14 24 chr11 144509062 144509231 -4274241 + MIR SINE MIR 18 184 -63 1168 197 153 3 chr11 144509559 144509853 -4273619 + MER58B DNA MER1_type 1 338 -3 195 129 0 0 chr11 144510203 144510234 -4273238 + (CA)n Simple_repeat Simple_repeat 2 32 0 238 259 0 17 chr11 144510693 144510751 -4272721 + MER5A DNA MER1_type 53 109 -80 399 216 226 35 chr11 144513896 144514095 -4269377 + L1ME1 LINE L1 5575 5811 -1997 777 248 26 62 chr11 144515686 144515993 -4267479 + L1ME1 LINE L1 5826 6121 -45 24 0 0 0 chr11 144516039 144516063 -4267409 + AT_rich Low_complexity Low_complexity 1 24 0 21 71 0 0 chr11 144518505 144518547 -4264925 + GC_rich Low_complexity Low_complexity 1 42 0 183 117 26 65 chr11 144518631 144518708 -4264764 + (CGGGG)n Simple_repeat Simple_repeat 1 74 0 228 204 11 57 chr11 144518728 144518816 -4264656 + G-rich Low_complexity Low_complexity 5 88 0 2026 102 14 3 chr11 144520286 144520571 -4262901 - AluSx SINE Alu -14 298 11 199 276 86 46 chr11 144720809 144720983 -4062489 - L2 LINE L2 -58 3255 3075 2104 145 0 7 chr11 144722647 144722957 -4060515 - AluSx SINE Alu -4 308 1 366 262 58 58 chr11 144723148 144723320 -4060152 - MIR SINE MIR -78 184 13 21 36 0 0 chr11 144724194 144724222 -4059250 + AT_rich Low_complexity Low_complexity 1 28 0 389 282 25 55 chr11 144725332 144725495 -4057977 + MIR SINE MIR 86 243 -19 287 234 85 43 chr11 144728078 144728172 -4055300 - MIR3 SINE MIR -53 155 58 852 172 23 23 chr11 144728302 144728476 -4054996 + L1MB7 LINE L1 5992 6165 -19 374 263 48 66 chr11 144729094 144729322 -4054150 - LTR16C LTR ERVL -31 460 237 301 371 0 0 chr11 144729750 144729855 -4053617 + L2 LINE L2 3149 3253 -19 303 345 62 16 chr11 144729997 144730191 -4053281 - MIR SINE MIR -48 214 12 279 307 0 45 chr11 144730209 144730297 -4053175 - L3 LINE CR1 -102 1475 1392 216 346 12 0 chr11 144730458 144730539 -4052933 + L3 LINE CR1 1487 1568 -9 22 35 0 0 chr11 144732275 144732304 -4051168 + AT_rich Low_complexity Low_complexity 1 29 0 270 95 0 0 chr11 144732878 144732920 -4050552 + (CAT)n Simple_repeat Simple_repeat 1 42 0 369 310 47 38 chr11 144733586 144734012 -4049460 + L1M4 LINE L1 4945 5374 -772 279 313 21 0 chr11 144736472 144736568 -4046904 - MER5A DNA MER1_type -83 106 9 192 387 45 0 chr11 144737535 144737646 -4045826 + L2 LINE L2 3140 3255 -17 185 147 44 29 chr11 144738549 144738617 -4044855 + C-rich Low_complexity Low_complexity 2 70 0 250 150 33 42 chr11 144738813 144738933 -4044539 + CT-rich Low_complexity Low_complexity 2 120 0 * 570 135 24 29 chr11 144738923 144739093 -4044379 + C-rich Low_complexity Low_complexity 3 171 0 25 75 0 0 chr11 144739281 144739334 -4044138 + GC_rich Low_complexity Low_complexity 1 53 0 310 73 18 18 chr11 144739624 144739679 -4043793 + (CA)n Simple_repeat Simple_repeat 1 55 0 332 296 87 0 chr11 144740657 144740772 -4042700 - MIR SINE MIR -110 152 28 187 358 25 0 chr11 144741883 144741964 -4041508 + L2 LINE L2 3109 3191 -81 298 343 0 10 chr11 144742456 144742558 -4040914 - L3b LINE CR1 -211 1372 1272 498 167 8 75 chr11 144743053 144743173 -4040299 - L1MA9 LINE L1 -21 6291 6180 1461 160 30 4 chr11 144743175 144743437 -4040035 - L1MA9 LINE L1 -231 6081 5813 500 276 26 0 chr11 144743532 144743684 -4039788 - MIR3 SINE MIR 0 208 53 1220 171 14 0 chr11 144743803 144744019 -4039453 - L1PA16 LINE L1 -9 6157 5939 444 285 15 15 chr11 144746372 144746509 -4036963 - L2 LINE L2 -4 3309 3173 498 245 127 17 chr11 144746533 144746778 -4036694 + MER31B LTR ERV1 3 355 -111 7724 210 49 31 chr11 144746778 144748458 -4035014 + MLT1A1-int LTR MaLR 25 1735 0 1422 193 40 82 chr11 144748461 144748839 -4034633 + MLT1A1 LTR MaLR 4 365 0 2313 88 7 16 chr11 144748957 144749263 -4034209 + AluSg SINE Alu 1 303 -7 260 91 23 0 chr11 144749341 144749385 -4034087 + (GA)n Simple_repeat Simple_repeat 1 45 0 21 0 0 0 chr11 144749572 144749593 -4033879 + AT_rich Low_complexity Low_complexity 1 21 0 1297 120 14 5 chr11 144749593 144749802 -4033670 - L1PB1 LINE L1 0 6151 5941 1310 71 0 44 chr11 144749802 144749984 -4033488 - L1PA8 LINE L1 0 6172 5998 21 36 0 0 chr11 144752168 144752196 -4031276 + AT_rich Low_complexity Low_complexity 1 28 0 216 0 0 0 chr11 144752266 144752290 -4031182 + (T)n Simple_repeat Simple_repeat 1 24 0 7470 223 59 38 chr11 144752644 144753117 -4030355 + L1MC3 LINE L1 1407 1869 -4346 189 74 0 0 chr11 144753117 144753144 -4030328 + (TG)n Simple_repeat Simple_repeat 2 28 0 7470 223 59 38 chr11 144753144 144755194 -4028278 + L1MC3 LINE L1 1869 3912 -2303 2398 88 0 0 chr11 144755194 144755491 -4027981 - AluY SINE Alu -10 301 5 7470 223 59 38 chr11 144755491 144756207 -4027265 + L1MC3 LINE L1 3912 4612 -1603 1657 128 13 3 chr11 144756208 144756236 -4027236 - L1P4 LINE L1 -649 5516 5490 2196 94 6 73 chr11 144756236 144756564 -4026908 - AluY SINE Alu -5 306 1 1657 128 13 3 chr11 144756564 144756906 -4026566 - L1P4 LINE L1 -675 5490 5142 2386 168 10 2 chr11 144756906 144757318 -4026154 + L1PA15 LINE L1 5747 6165 0 2733 221 16 44 chr11 144757323 144757891 -4025581 + L1MC3 LINE L1 4602 5142 -1073 2344 104 3 0 chr11 144757891 144758200 -4025272 - AluSg SINE Alu 0 310 1 2733 221 16 44 chr11 144758200 144758445 -4025027 + L1MC3 LINE L1 5142 5392 -823 4683 155 45 30 chr11 144758455 144759347 -4024125 + L1MC3 LINE L1 5468 7821 -33 2243 100 3 10 chr11 144759444 144759755 -4023717 + AluY SINE Alu 1 309 -2 185 343 112 0 chr11 144762522 144762665 -4020807 - L2 LINE L2 -740 2574 2416 2313 106 3 3 chr11 144762677 144762988 -4020484 + AluSx SINE Alu 1 311 -1 243 61 0 0 chr11 144765560 144765593 -4017879 + (CA)n Simple_repeat Simple_repeat 2 34 0 1964 163 16 99 chr11 144766134 144766587 -4016885 - LTR12 LTR ERV1 -234 480 66 262 250 0 0 chr11 144766596 144766648 -4016824 - LTR30 LTR ERV1 -670 52 1 694 298 23 5 chr11 144766923 144767138 -4016334 + MER20 DNA MER1_type 1 219 0 592 222 21 39 chr11 144767811 144768030 -4015442 + MIR SINE MIR 10 219 -43 297 109 0 0 chr11 144769269 144769315 -4014157 + (A)n Simple_repeat Simple_repeat 1 46 0 773 273 168 24 chr11 144771221 144771595 -4011877 + L2 LINE L2 2347 2774 -540 323 359 8 8 chr11 144771639 144771770 -4011702 + L2 LINE L2 3182 3312 -1 3675 207 45 87 chr11 144772719 144772975 -4010497 - L1MC4 LINE L1 -2 8040 7775 2135 113 0 0 chr11 144772975 144773259 -4010213 - AluSg1 SINE Alu -25 284 1 3675 207 45 87 chr11 144773259 144774277 -4009195 - L1MC4 LINE L1 -267 7775 6820 203 156 0 0 chr11 144774491 144774523 -4008949 + CT-rich Low_complexity Low_complexity 1 32 0 210 278 0 0 chr11 144777161 144777215 -4006257 + (TA)n Simple_repeat Simple_repeat 2 55 0 201 121 0 0 chr11 144777215 144777248 -4006224 + (CA)n Simple_repeat Simple_repeat 2 34 0 188 228 239 11 chr11 144777310 144777402 -4006070 - L2 LINE L2 -2 3311 3199 409 372 43 0 chr11 144777420 144777654 -4005818 - MIR SINE MIR -1 261 18 1928 150 14 0 chr11 144777925 144778212 -4005260 - AluSx SINE Alu -21 291 1 217 284 53 11 chr11 144779191 144779286 -4004186 + MIR3 SINE MIR 4 102 -106 312 73 109 0 chr11 144782511 144782566 -4000906 - MLT2B1 LTR ERVL 0 520 460 758 135 0 51 chr11 144782566 144782881 -4000591 + (TA)n Simple_repeat Simple_repeat 1 298 0 258 267 11 11 chr11 144782885 144782975 -4000497 + L1MC4 LINE L1 6614 6703 -1339 * 261 217 72 0 chr11 144782959 144783042 -4000430 + L1MC4 LINE L1 6614 6702 -1340 1797 196 169 7 chr11 144783049 144783061 -4000411 - MLT2B1 LTR ERVL -40 480 471 213 39 0 0 chr11 144783061 144783087 -4000385 + (CA)n Simple_repeat Simple_repeat 1 26 0 1797 196 169 7 chr11 144783087 144783487 -3999985 - MLT2B1 LTR ERVL -49 471 1 200 171 0 0 chr11 144783723 144783758 -3999714 - MIR SINE MIR -150 112 78 186 269 11 65 chr11 144784231 144784324 -3999148 + MIR SINE MIR 106 193 -69 1790 168 3 7 chr11 144784341 144784638 -3998834 + AluJb SINE Alu 1 296 -16 288 271 90 15 chr11 144784639 144784772 -3998700 - L2 LINE L2 -2 3311 3169 3172 267 85 30 chr11 144785868 144786612 -3996860 + L1MC/D LINE L1 36 873 -5523 1520 213 6 22 chr11 144786612 144786927 -3996545 + AluJo SINE Alu 1 310 -2 3172 267 85 30 chr11 144786927 144787399 -3996073 + L1MC/D LINE L1 873 1318 -5078 504 213 67 6 chr11 144787399 144787563 -3995909 + L1MC/D LINE L1 4448 4621 -1594 1263 234 19 12 chr11 144787582 144787902 -3995570 + L1MC/D LINE L1 4707 5028 -1187 1633 202 13 34 chr11 144787950 144788294 -3995178 + MLT1A1 LTR MaLR 28 396 0 328 198 0 0 chr11 144788314 144788395 -3995077 + L1MC/D LINE L1 5050 5130 -1085 1686 173 6 3 chr11 144788401 144788713 -3994759 + L1MC/D LINE L1 5457 5769 -2295 2649 219 111 6 chr11 144788805 144789835 -3993637 + L1ME1 LINE L1 4841 5980 -186 247 261 0 15 chr11 144793615 144793680 -3989792 + GA-rich Low_complexity Low_complexity 1 64 0 414 0 0 0 chr11 144793818 144793864 -3989608 + (TG)n Simple_repeat Simple_repeat 2 47 0 1707 169 140 36 chr11 144794951 144795365 -3988107 + MSTB2 LTR MaLR 1 457 0 182 281 35 0 chr11 144795486 144795543 -3987929 + MIR SINE MIR 86 144 -118 752 280 57 0 chr11 144796272 144796483 -3986989 - MIR SINE MIR -8 254 32 2264 92 0 0 chr11 144796892 144797214 -3986258 + AluSx SINE Alu 1 322 0 2206 94 14 11 chr11 144797220 144797530 -3985942 + AluSq SINE Alu 1 311 0 217 0 0 0 chr11 144797506 144797710 -3985762 + (TAA)n Simple_repeat Simple_repeat 1 204 0 585 164 0 0 chr11 144797735 144797894 -3985578 + (CGA)n Simple_repeat Simple_repeat 2 160 0 888 61 0 0 chr11 144797894 144798009 -3985463 + (GGAGAA)n Simple_repeat Simple_repeat 4 118 0 196 298 132 8 chr11 144799440 144799561 -3983911 + L2 LINE L2 3173 3308 -5 298 308 77 0 chr11 144800110 144800253 -3983219 + MLT1J1 LTR MaLR 7 160 -286 377 228 123 57 chr11 144800259 144800470 -3983002 + MLT1J2 LTR MaLR 193 417 -33 2374 98 7 0 chr11 144803207 144803512 -3979960 - AluSq SINE Alu -6 307 1 1074 79 0 21 chr11 144803518 144803658 -3979814 - AluSq/x SINE Alu -174 139 3 211 325 35 9 chr11 144804444 144804558 -3978914 + MIR SINE MIR 132 248 -14 559 298 34 0 chr11 144807132 144807340 -3976132 - MIR SINE MIR -8 254 40 2316 86 0 0 chr11 144807892 144808193 -3975279 + AluSg SINE Alu 1 301 0 21 0 0 0 chr11 144811116 144811137 -3972335 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr11 144811448 144811473 -3971999 + AT_rich Low_complexity Low_complexity 1 25 0 398 320 123 22 chr11 144812119 144812849 -3970623 + L2 LINE L2 1755 2558 -756 2337 75 0 0 chr11 144815316 144815670 -3967802 + AluSc SINE Alu 1 354 0 422 267 107 27 chr11 144816344 144816494 -3966978 - MLT1I LTR MaLR -150 259 98 225 0 0 0 chr11 144818887 144818912 -3964560 + (T)n Simple_repeat Simple_repeat 1 25 0 208 279 25 131 chr11 144821132 144821254 -3962218 + MIR SINE MIR 85 193 -69 * 225 218 55 0 chr11 144821244 144821299 -3962173 + L2 LINE L2 3215 3272 0 189 287 167 0 chr11 144821470 144821578 -3961894 + MIR SINE MIR 127 252 -10 809 304 20 4 chr11 144823140 144823393 -3960079 - MIR SINE MIR 0 262 6 223 122 41 0 chr11 144824134 144824183 -3959289 + (TTA)n Simple_repeat Simple_repeat 2 52 0 2239 114 3 3 chr11 144825747 144826053 -3957419 + AluSx SINE Alu 1 306 -6 603 305 0 0 chr11 144826064 144826218 -3957254 - MIR SINE MIR -106 156 3 21 36 0 0 chr11 144826737 144826765 -3956707 + AT_rich Low_complexity Low_complexity 1 28 0 214 205 0 0 chr11 144827021 144827060 -3956412 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 2275 75 0 33 chr11 144827097 144827404 -3956068 + AluY SINE Alu 3 299 -12 293 229 14 17 chr11 144827490 144827636 -3955836 + MER53 DNA DNA 7 189 0 602 323 58 56 chr11 144829054 144829485 -3953987 - L2 LINE L2 0 3272 2841 336 344 52 13 chr11 144829560 144829714 -3953758 - L2 LINE L2 -922 2392 2233 244 370 9 0 chr11 144829712 144829820 -3953652 - MIR SINE MIR -3 259 151 * 229 250 272 0 chr11 144831410 144831546 -3951926 + L1ME LINE L1 5712 5884 -237 1276 193 4 13 chr11 144831741 144831974 -3951498 + AluJo SINE Alu 22 252 -60 280 270 98 43 chr11 144832872 144833035 -3950437 + MER5B DNA MER1_type 7 178 0 253 248 8 111 chr11 144833079 144833196 -3950276 + L3 LINE CR1 1331 1435 -142 2344 89 118 79 chr11 144833305 144833711 -3949761 + MSTA LTR MaLR 3 424 -4 223 302 240 0 chr11 144834135 144834231 -3949241 + L3 LINE CR1 1454 1572 -5 213 94 0 0 chr11 144835340 144835372 -3948100 + (TA)n Simple_repeat Simple_repeat 2 33 0 29 0 0 0 chr11 144836122 144836151 -3947321 + AT_rich Low_complexity Low_complexity 1 29 0 1280 181 108 122 chr11 144837776 144838370 -3945102 + L1MD1 LINE L1 5656 6242 0 187 354 37 37 chr11 144841073 144841155 -3942317 - L2 LINE L2 0 3272 3191 506 303 27 32 chr11 144842970 144843155 -3940317 + MARNA DNA Mariner 241 424 -162 479 282 87 76 chr11 144843532 144844115 -3939357 - L2 LINE L2 0 3313 2576 304 395 24 0 chr11 144844771 144844895 -3938577 - MIR3 SINE MIR -81 127 1 247 261 35 118 chr11 144845813 144846100 -3937372 + L2 LINE L2 2276 2538 -776 188 200 20 0 chr11 144847304 144847354 -3936118 + CT-rich Low_complexity Low_complexity 1 51 0 3732 218 30 20 chr11 144847354 144848252 -3935220 - L1MB8 LINE L1 0 6178 5272 363 23 0 0 chr11 144848393 144848437 -3935035 + (TG)n Simple_repeat Simple_repeat 1 44 0 1705 129 94 0 chr11 144848437 144848693 -3934779 - AluSq SINE Alu -33 280 1 315 250 15 91 chr11 144849515 144849647 -3933825 + MIR SINE MIR 66 187 -75 240 86 0 0 chr11 144849755 144849790 -3933682 + (TTTTC)n Simple_repeat Simple_repeat 1 35 0 23 33 0 0 chr11 144850582 144850612 -3932860 + AT_rich Low_complexity Low_complexity 1 30 0 188 0 0 69 chr11 144851072 144851101 -3932371 + (TTCCC)n Simple_repeat Simple_repeat 1 27 0 2289 102 3 3 chr11 144851105 144851409 -3932063 - AluSp SINE Alu -9 304 1 249 339 138 0 chr11 144851646 144851864 -3931608 + L2 LINE L2 2808 3055 -217 441 271 23 16 chr11 144852631 144852760 -3930712 + L2 LINE L2 3182 3311 -2 196 257 60 138 chr11 144855141 144855359 -3928113 + L3 LINE CR1 868 1068 -509 232 389 56 16 chr11 144855431 144855806 -3927666 + L3 LINE CR1 1184 1573 -4 21 71 0 0 chr11 144856260 144856302 -3927170 + AT_rich Low_complexity Low_complexity 1 42 0 268 355 50 8 chr11 144856713 144856834 -3926638 + L2 LINE L2 3147 3272 0 3642 161 9 0 chr11 144857632 144858199 -3925273 + L1PA15 LINE L1 5594 6165 0 569 289 93 48 chr11 144858793 144859105 -3924367 - L2 LINE L2 0 3313 2988 257 345 27 0 chr11 144859207 144859317 -3924155 + MIR3 SINE MIR 66 178 -30 334 276 32 96 chr11 144859939 144860095 -3923377 - MIR SINE MIR -98 164 19 275 246 64 36 chr11 144860065 144860175 -3923297 + MIR SINE MIR 48 160 -102 * 2516 74 0 3 chr11 144860676 144860988 -3922484 + AluY SINE Alu 1 311 0 522 91 0 0 chr11 144861750 144861827 -3921645 + (TA)n Simple_repeat Simple_repeat 1 77 0 3289 219 70 10 chr11 144861827 144862618 -3920854 + MER21B LTR ERV1 25 862 -1 286 353 99 20 chr11 144862799 144863000 -3920472 + MIR SINE MIR 46 262 0 259 347 8 25 chr11 144862999 144863120 -3920352 + MIR SINE MIR 132 250 -12 * 342 327 67 7 chr11 144863231 144863381 -3920091 + MIR3 SINE MIR 50 208 0 2349 53 12 53 chr11 144863905 144864226 -3919246 + AluY SINE Alu 1 308 -3 186 175 75 0 chr11 144864498 144864538 -3918934 + L3b LINE CR1 1531 1573 -10 337 338 84 87 chr11 144864778 144865136 -3918336 + L2 LINE L2 2883 3239 -33 420 386 13 7 chr11 144866054 144866207 -3917265 + L2 LINE L2 3117 3270 -2 283 326 76 28 chr11 144866466 144866610 -3916862 + L2 LINE L2 3122 3272 0 704 272 104 49 chr11 144869163 144869642 -3913830 + L2 LINE L2 2780 3270 -43 184 231 46 46 chr11 144869951 144870016 -3913456 + MIR SINE MIR 71 135 -73 184 179 0 26 chr11 144869988 144870027 -3913445 + MIR SINE MIR 107 144 -118 216 130 0 0 chr11 144872088 144872134 -3911338 + (GA)n Simple_repeat Simple_repeat 2 47 0 279 330 231 0 chr11 144872981 144873163 -3910309 - L3 LINE CR1 -15 1562 1339 330 344 66 33 chr11 144873447 144873659 -3909813 - MIR SINE MIR -43 219 1 281 310 7 26 chr11 144873671 144873826 -3909646 + (TATATG)n Simple_repeat Simple_repeat 2 153 0 * 360 273 16 0 chr11 144873725 144873853 -3909619 + (TA)n Simple_repeat Simple_repeat 2 131 0 1565 186 29 16 chr11 144874668 144874975 -3908497 + AluJo SINE Alu 1 311 -1 859 205 11 21 chr11 144876205 144876395 -3907077 + MER3 DNA MER1_type 8 195 -14 675 269 16 21 chr11 144876399 144876585 -3906887 - MER5A DNA MER1_type 0 189 5 871 225 28 41 chr11 144876615 144876833 -3906639 + MER20 DNA MER1_type 1 215 -4 243 289 92 13 chr11 144878258 144878410 -3905062 + MIR SINE MIR 71 234 -28 277 339 8 0 chr11 144879212 144879330 -3904142 - L2 LINE L2 -704 2610 2492 263 28 28 0 chr11 144880599 144880635 -3902837 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 370 345 49 25 chr11 144882253 144882456 -3901016 + MIR SINE MIR 44 251 -11 196 252 50 92 chr11 144882486 144882605 -3900867 - MIR3 SINE MIR -22 186 73 704 260 34 10 chr11 144882761 144882965 -3900507 - MIR SINE MIR -1 261 53 246 313 43 52 chr11 144885222 144885337 -3898135 - MIR SINE MIR -79 129 16 721 168 122 0 chr11 144886226 144886357 -3897115 + Tigger7 DNA MER2_type 258 404 -2083 477 156 83 0 chr11 144886467 144886563 -3896909 + Tigger7 DNA MER2_type 410 513 -1974 * 511 204 0 62 chr11 144886546 144886659 -3896813 + Tigger7 DNA MER2_type 2382 2487 0 338 251 256 0 chr11 144888526 144888725 -3894747 + MIR SINE MIR 13 262 0 770 248 53 84 chr11 144890151 144890510 -3892962 + MER34 LTR ERV1 4 351 -191 741 226 25 62 chr11 144890483 144890757 -3892715 + MER34 LTR ERV1 279 542 0 * 180 94 57 19 chr11 144891114 144891167 -3892305 + A-rich Low_complexity Low_complexity 2 56 0 549 256 37 21 chr11 144891480 144891671 -3891801 - L3b LINE CR1 -255 1328 1135 243 306 0 24 chr11 144892302 144892387 -3891085 + GA-rich Low_complexity Low_complexity 2 84 0 185 167 0 0 chr11 144892749 144892785 -3890687 + MIR3 SINE MIR 125 160 -48 2773 199 24 4 chr11 144892821 144893354 -3890118 - MER44D DNA MER2_type -6 599 1 4879 59 3 0 chr11 144893370 144893959 -3889513 + LTR10C LTR ERV1 1 591 0 394 353 44 8 chr11 144894809 144895061 -3888411 - MIR SINE MIR -1 261 1 964 216 42 69 chr11 144895130 144895463 -3888009 + MER33 DNA MER1_type 1 324 0 207 0 0 0 chr11 144897104 144897127 -3886345 + (A)n Simple_repeat Simple_repeat 1 23 0 180 296 0 0 chr11 144898028 144898082 -3885390 + L2 LINE L2 3028 3081 -191 213 343 27 0 chr11 144898513 144898586 -3884886 - L3 LINE CR1 -6 1571 1497 185 343 0 19 chr11 144899134 144899239 -3884233 - MIR SINE MIR -72 136 34 1462 200 35 60 chr11 144899250 144899650 -3883822 - MLT1B LTR MaLR 0 390 1 523 267 28 64 chr11 144900616 144900991 -3882481 - LTR16C LTR ERVL 0 491 69 488 323 31 35 chr11 144901023 144901283 -3882189 + MIR SINE MIR 2 260 -2 2019 145 117 28 chr11 144901401 144901793 -3881679 + MSTA LTR MaLR 2 428 0 3408 55 26 11 chr11 144902580 144903032 -3880440 + L1PA8 LINE L1 5714 6172 0 243 365 83 7 chr11 144904209 144904354 -3879118 - L2 LINE L2 0 3272 3117 1931 132 7 24 chr11 144904403 144904800 -3878672 - AluSx SINE Alu 0 392 1 2232 153 41 19 chr11 144905988 144906407 -3877065 - MSTB1 LTR MaLR -4 428 1 362 123 31 0 chr11 144907199 144907264 -3876208 + HAL1 LINE L1 1580 1646 -861 993 117 6 11 chr11 144907287 144907467 -3876005 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 22 0 0 0 chr11 144909004 144909026 -3874446 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr11 144909086 144909109 -3874363 + (CATA)n Simple_repeat Simple_repeat 2 24 0 2294 112 0 0 chr11 144909757 144910062 -3873410 + AluSg SINE Alu 1 305 -5 2050 139 4 0 chr11 144910199 144910500 -3872972 - AluSx SINE Alu 0 302 1 518 75 0 57 chr11 144910705 144910811 -3872661 + (TTCCC)n Simple_repeat Simple_repeat 3 102 0 220 295 66 25 chr11 144911040 144911162 -3872310 - L2 LINE L2 -219 3053 2927 247 196 181 51 chr11 144912486 144912624 -3870848 + L1M3 LINE L1 5275 5430 -904 228 238 76 54 chr11 144912709 144912894 -3870578 - L1ME4a LINE L1 -182 5939 5751 645 232 81 11 chr11 144913082 144913267 -3870205 + MIR SINE MIR 8 205 -57 362 234 28 65 chr11 144913830 144913937 -3869535 + MER63 DNA MER1_type 647 749 -311 260 260 13 13 chr11 144913942 144914019 -3869453 + MER63 DNA MER1_type 986 1062 0 192 204 114 0 chr11 144914493 144914537 -3868935 - MIR SINE MIR -141 67 19 221 196 18 36 chr11 144914641 144914697 -3868775 - L2 LINE L2 0 3313 3259 235 324 0 0 chr11 144915998 144916066 -3867406 - MIR SINE MIR -59 149 82 436 274 33 74 chr11 144916127 144916342 -3867130 - MIR SINE MIR -45 217 12 667 285 177 17 chr11 144916705 144917440 -3866032 - L2 LINE L2 0 3313 2460 188 32 97 0 chr11 144917553 144917584 -3865888 + (TTAAA)n Simple_repeat Simple_repeat 3 36 0 187 276 92 40 chr11 144918514 144918590 -3864882 + L2 LINE L2 3229 3308 -5 741 164 7 27 chr11 144918956 144919102 -3864370 - L1MA8 LINE L1 -6 6285 6143 249 322 49 21 chr11 144919103 144919246 -3864226 + MIR SINE MIR 116 262 0 333 332 16 47 chr11 144919936 144920126 -3863346 + MIR SINE MIR 24 207 -55 1699 163 51 70 chr11 144920143 144920498 -3862974 + MER7A DNA MER2_type 1 346 0 387 352 57 52 chr11 144923104 144923527 -3859945 + L2 LINE L2 2842 3266 -6 194 274 32 16 chr11 144923535 144923597 -3859875 - L2 LINE L2 -86 3227 3165 343 304 20 10 chr11 144924018 144924120 -3859352 + MIR SINE MIR 20 122 -140 604 302 26 5 chr11 144924218 144924407 -3859065 + MIR SINE MIR 59 251 -11 2918 88 6 0 chr11 144924516 144924878 -3858594 + THE1B LTR MaLR 1 364 0 180 0 0 0 chr11 144926169 144926189 -3857283 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 320 259 12 0 chr11 144927266 144927347 -3856125 + MIR3 SINE MIR 125 206 -2 508 304 91 35 chr11 144927934 144928164 -3855308 + MIR SINE MIR 7 249 -13 369 301 68 8 chr11 144928406 144928539 -3854933 - MIR SINE MIR -12 250 110 240 375 54 0 chr11 144928710 144928822 -3854650 - L2 LINE L2 -4 3268 3151 279 256 12 0 chr11 144930863 144930949 -3852523 + (TA)n Simple_repeat Simple_repeat 1 87 0 1265 269 51 35 chr11 144931064 144931517 -3851955 + MLT1C LTR MaLR 1 460 -7 29 28 0 0 chr11 144932557 144932593 -3850879 + GC_rich Low_complexity Low_complexity 1 36 0 243 0 0 0 chr11 144932599 144932626 -3850846 + (A)n Simple_repeat Simple_repeat 1 27 0 204 125 0 0 chr11 144932916 144932948 -3850524 + (A)n Simple_repeat Simple_repeat 1 32 0 2021 155 3 0 chr11 144933878 144934175 -3849297 + AluSq SINE Alu 1 298 -15 352 318 93 27 chr11 144934247 144934633 -3848839 - L2 LINE L2 -8 3305 2820 2100 72 61 4 chr11 144934718 144934996 -3848476 + L1PA8 LINE L1 5870 6163 -9 2080 133 3 0 chr11 144935277 144935571 -3847901 + AluSx SINE Alu 1 295 -17 280 299 36 22 chr11 144935612 144935749 -3847723 - MER104 DNA Tc2 -41 139 1 447 228 90 21 chr11 144936275 144936420 -3847052 - MIR SINE MIR -14 248 94 1992 191 16 12 chr11 144936567 144937022 -3846450 + MER31A LTR ERV1 4 465 -1 2141 114 34 0 chr11 144937116 144937414 -3846058 + AluSx SINE Alu 1 308 -4 420 322 52 34 chr11 144938694 144938927 -3844545 + MIR SINE MIR 25 261 -1 22 0 0 0 chr11 144939010 144939032 -3844440 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr11 144939685 144939708 -3843764 + (A)n Simple_repeat Simple_repeat 1 23 0 244 111 0 0 chr11 144941234 144941270 -3842202 + MIR SINE MIR 47 82 -180 333 0 0 0 chr11 144943987 144944024 -3839448 + (CA)n Simple_repeat Simple_repeat 2 38 0 271 208 0 0 chr11 144944853 144944901 -3838571 + LTR37A LTR ERV1 18 65 -361 483 131 81 30 chr11 144944911 144945010 -3838462 - MER41B LTR ERV1 -88 547 444 * 1544 202 28 11 chr11 144945000 144945362 -3838110 + LTR37A LTR ERV1 59 426 0 312 291 0 0 chr11 144947269 144947410 -3836062 + CT-rich Low_complexity Low_complexity 3 143 0 215 351 9 0 chr11 144947555 144947669 -3835803 + GA-rich Low_complexity Low_complexity 2 116 0 210 313 0 0 chr11 144947706 144947786 -3835686 + MIR SINE MIR 183 262 0 229 289 48 48 chr11 144949288 144949371 -3834101 - L2 LINE L2 -49 3223 3141 1469 234 96 40 chr11 144949910 144950388 -3833084 + MLT1D LTR MaLR 1 505 0 362 253 33 0 chr11 144950420 144950511 -3832961 - MER94 DNA DNA -40 94 1 2013 125 70 25 chr11 144951454 144951813 -3831659 + THE1C LTR MaLR 1 375 0 235 347 0 0 chr11 144953724 144953799 -3829673 - MIR SINE MIR -80 182 108 216 359 58 0 chr11 144954460 144954563 -3828909 + MIR SINE MIR 153 261 -1 232 333 100 25 chr11 144956117 144956237 -3827235 - L3b LINE CR1 -209 1374 1246 221 395 48 30 chr11 144956546 144956713 -3826759 - MIR3 SINE MIR -23 185 16 308 388 39 11 chr11 144957326 144957504 -3825968 - L2 LINE L2 -483 2831 2649 3929 219 60 83 chr11 144957582 144959032 -3824440 + L1MC4a LINE L1 6339 7755 -53 584 301 34 19 chr11 144959174 144959440 -3824032 - L2 LINE L2 -909 2405 2136 274 280 93 19 chr11 144962126 144962233 -3821239 + MIR SINE MIR 98 212 -50 537 286 41 36 chr11 144962376 144962572 -3820900 + L2 LINE L2 3117 3313 0 1969 229 51 22 chr11 144962707 144963196 -3820276 + MLT1D LTR MaLR 3 505 0 2684 29 10 0 chr11 144963262 144963569 -3819903 + AluY SINE Alu 1 310 -1 347 281 13 59 chr11 144964304 144964457 -3819015 - MER5B DNA MER1_type -6 172 27 271 320 0 0 chr11 144964724 144964799 -3818673 + L2 LINE L2 3238 3312 -1 288 201 45 22 chr11 144966704 144966838 -3816634 + (TA)n Simple_repeat Simple_repeat 2 138 0 248 257 30 30 chr11 144967375 144967476 -3815996 + L1MC4 LINE L1 6609 6709 -1333 208 125 18 18 chr11 144968140 144968196 -3815276 + (TG)n Simple_repeat Simple_repeat 2 57 0 1053 213 57 16 chr11 144968301 144968545 -3814927 + L1MC3 LINE L1 6458 6711 -1074 1549 160 23 0 chr11 144968554 144968816 -3814656 + L1MC3 LINE L1 6996 7263 -522 1363 111 6 0 chr11 144968816 144968996 -3814476 + AluSp SINE Alu 111 291 -22 379 304 138 34 chr11 144969019 144969340 -3814132 - L2 LINE L2 -12 3260 2910 1943 146 10 0 chr11 144970189 144970490 -3812982 + AluSx SINE Alu 1 304 -8 560 282 132 53 chr11 144970490 144970809 -3812663 - L2 LINE L2 -94 3219 2876 261 157 11 22 chr11 144970934 144971023 -3812449 + (TG)n Simple_repeat Simple_repeat 1 88 0 1628 154 3 56 chr11 144971697 144972021 -3811451 - AluJo SINE Alu -3 309 3 253 59 0 0 chr11 144972354 144972388 -3811084 + (TTTTG)n Simple_repeat Simple_repeat 1 50 0 677 188 8 0 chr11 144972388 144972506 -3810966 - FLAM_C SINE Alu -1 152 1 490 179 0 0 chr11 144972809 144972893 -3810579 - MLT1F1 LTR MaLR -465 102 19 824 148 0 8 chr11 144973155 144973283 -3810189 + FLAM_C SINE Alu 6 132 -11 181 241 127 51 chr11 144973446 144973525 -3809947 - L2 LINE L2 -33 3280 3196 248 157 229 29 chr11 144973566 144973636 -3809836 - MLT1E LTR MaLR -509 84 1 227 346 166 23 chr11 144973636 144973853 -3809619 + L3 LINE CR1 533 780 -797 368 206 47 0 chr11 144976716 144976823 -3806649 - Charlie5 DNA MER1_type -56 2556 2445 833 161 0 0 chr11 144976845 144976975 -3806497 - FLAM_C SINE Alu 0 143 14 514 209 5 171 chr11 144978156 144978367 -3805105 + MER5B DNA MER1_type 3 178 0 2773 22 0 0 chr11 144978890 144979201 -3804271 + AluYa5 SINE Alu 1 311 0 342 286 44 22 chr11 144979551 144979642 -3803830 + L2 LINE L2 3168 3260 -12 241 214 103 103 chr11 144980496 144980622 -3802850 + L2 LINE L2 1917 2042 -1272 282 219 0 0 chr11 144981539 144981603 -3801869 + (TATATG)n Simple_repeat Simple_repeat 4 67 0 201 125 50 0 chr11 144981629 144981669 -3801803 + (TA)n Simple_repeat Simple_repeat 1 42 0 483 256 31 31 chr11 144981697 144981871 -3801601 - MIR SINE MIR -62 146 6 492 285 17 39 chr11 144982685 144982864 -3800608 - MIR SINE MIR -75 187 13 23 0 0 0 chr11 144983687 144983710 -3799762 + AT_rich Low_complexity Low_complexity 1 23 0 197 333 121 30 chr11 144983887 144983986 -3799486 - L2 LINE L2 -12 3260 3153 2343 152 101 3 chr11 144985046 144985434 -3798038 + MSTB LTR MaLR 1 426 0 6454 214 45 50 chr11 144985439 144987024 -3796448 + MSTB-int LTR MaLR 5 1580 0 814 226 0 0 chr11 144987024 144987170 -3796302 + MSTB LTR MaLR 1 146 -280 290 290 80 26 chr11 144987494 144987672 -3795800 + L1 LINE L1 3605 3789 -2357 312 365 33 35 chr11 144988158 144988610 -3794862 + L1 LINE L1 4406 4856 -1290 3019 288 90 20 chr11 144988610 144989905 -3793567 - L2 LINE L2 -189 3124 1735 21 0 0 0 chr11 144990006 144990027 -3793445 + AT_rich Low_complexity Low_complexity 1 21 0 223 246 203 8 chr11 144990645 144990763 -3792709 + MIR SINE MIR 119 259 -3 2245 105 3 0 chr11 144991016 144991322 -3792150 - AluSp SINE Alu -6 307 1 392 296 91 35 chr11 144992525 144992724 -3790748 + MIR SINE MIR 1 210 -52 2403 50 27 0 chr11 144994018 144994144 -3789328 + AluY SINE Alu 2 123 -188 197 0 71 0 chr11 144994144 144994172 -3789300 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 2403 50 27 0 chr11 144994172 144994342 -3789130 + AluY SINE Alu 123 306 -5 207 0 0 0 chr11 144994547 144994570 -3788902 + (A)n Simple_repeat Simple_repeat 1 23 0 758 306 97 31 chr11 144996448 144996902 -3786570 - LTR33 LTR ERVL -6 515 32 2148 40 0 4 chr11 144997667 144997947 -3785525 + L1PA2 LINE L1 5909 6155 0 188 292 177 0 chr11 144999490 144999550 -3783922 - MER5A DNA MER1_type 0 189 141 2327 75 0 3 chr11 144999550 144999845 -3783627 + AluY SINE Alu 1 294 -17 188 292 177 0 chr11 144999845 144999880 -3783592 - MER5A DNA MER1_type -48 141 77 1617 276 114 18 chr11 145000007 145000576 -3782896 + MLT1E2 LTR MaLR 3 626 0 212 352 23 62 chr11 145000620 145000748 -3782724 + L2 LINE L2 2630 2752 -562 236 330 122 48 chr11 145000809 145001103 -3782369 + L2 LINE L2 2951 3266 -6 1817 211 129 67 chr11 145001123 145001706 -3781766 + MER21B LTR ERV1 11 629 -234 458 276 24 16 chr11 145001758 145001885 -3781587 - MIR SINE MIR -79 183 56 270 0 0 0 chr11 145001886 145001916 -3781556 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1999 56 0 0 chr11 145001916 145002149 -3781323 - L1PA4 LINE L1 -10 6145 5913 3119 168 46 82 chr11 145002934 145003654 -3779818 + LTR8A LTR ERV1 34 727 0 3933 199 63 32 chr11 145003769 145004670 -3778802 - MER63C DNA MER1_type -1 929 1 782 195 30 18 chr11 145006208 145006372 -3777100 + MLT1G LTR MaLR 416 581 -9 1120 68 0 14 chr11 145006388 145006535 -3776937 - L1PA7 LINE L1 0 6154 6010 852 177 57 19 chr11 145006750 145006908 -3776564 - FRAM SINE Alu -18 158 1 26 74 0 0 chr11 145006990 145007044 -3776428 + AT_rich Low_complexity Low_complexity 1 54 0 292 290 43 32 chr11 145007093 145007186 -3776286 - MIR SINE MIR -62 146 53 2363 184 47 2 chr11 145007919 145008327 -3775145 + MSTB LTR MaLR 1 426 0 234 243 57 0 chr11 145008629 145008699 -3774773 - L1ME4a LINE L1 -74 6047 5974 534 291 88 31 chr11 145008706 145009025 -3774447 - L1ME4a LINE L1 -210 5911 5575 1099 220 104 75 chr11 145009137 145009621 -3773851 + MER110A LTR ERV1 1 476 -8 186 294 152 0 chr11 145009661 145009753 -3773719 - MIR SINE MIR -9 253 148 244 156 0 22 chr11 145011693 145011738 -3771734 - L1ME LINE L1 -201 5920 5877 1499 171 62 0 chr11 145011853 145012110 -3771362 + L1PA15 LINE L1 5893 6165 0 910 143 23 0 chr11 145012276 145012409 -3771063 - AluJo SINE Alu -54 258 123 319 226 237 34 chr11 145012409 145012586 -3770886 - L1MEd LINE L1 -4863 1256 1044 379 331 81 0 chr11 145012593 145012717 -3770755 + MER119 DNA MER1_type 1 134 -449 * 599 194 7 69 chr11 145012709 145012853 -3770619 + MER119 DNA MER1_type 448 582 -1 339 273 38 8 chr11 145012872 145013004 -3770468 - L1MEd LINE L1 -5088 1031 896 1045 0 0 0 chr11 145013016 145013129 -3770343 + AluYa5/8 SINE Alu 187 299 -11 548 304 137 55 chr11 145013203 145013967 -3769505 - L1MEd LINE L1 -5282 837 11 511 230 88 25 chr11 145016082 145016257 -3767215 + MIR SINE MIR 20 206 -56 491 172 40 20 chr11 145016379 145016478 -3766994 - U13 snRNA snRNA 0 104 4 249 359 0 0 chr11 145017064 145017181 -3766291 + C-rich Low_complexity Low_complexity 4 120 0 293 277 30 0 chr11 145017299 145017400 -3766072 + HAL1 LINE L1 1572 1675 -832 203 103 26 0 chr11 145017822 145017861 -3765611 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 2482 247 43 19 chr11 145018072 145018719 -3764753 + MER21B LTR ERV1 78 740 -123 2516 68 0 0 chr11 145018897 145019208 -3764264 - AluY SINE Alu 0 311 1 458 308 21 36 chr11 145019259 145019538 -3763934 + L1ME LINE L1 3729 4003 -2143 2340 105 0 13 chr11 145019554 145019867 -3763605 + AluSp SINE Alu 1 309 -4 1797 160 10 10 chr11 145019886 145020193 -3763279 + AluSq SINE Alu 1 307 -6 22 0 0 0 chr11 145020202 145020224 -3763248 + AT_rich Low_complexity Low_complexity 1 22 0 243 61 0 0 chr11 145020225 145020258 -3763214 + (TG)n Simple_repeat Simple_repeat 2 34 0 197 32 0 32 chr11 145020258 145020289 -3763183 + (TA)n Simple_repeat Simple_repeat 2 31 0 329 310 43 71 chr11 145020332 145020613 -3762859 + L1ME LINE L1 4111 4383 -1763 352 272 92 79 chr11 145020647 145021015 -3762457 + L1ME LINE L1 4643 5015 -1131 514 322 83 8 chr11 145021430 145021672 -3761800 - MIR SINE MIR 0 262 3 346 259 76 60 chr11 145021686 145021871 -3761601 + L1ME LINE L1 5445 5632 -489 709 212 0 0 chr11 145221933 145222065 -3561407 - AluJo/FLAM SINE Alu -169 133 2 2047 155 0 0 chr11 145222076 145222379 -3561093 - AluSx SINE Alu -9 303 1 357 264 84 75 chr11 145222379 145222618 -3560854 - MIR SINE MIR -11 251 11 488 283 162 0 chr11 145222696 145222894 -3560578 + MIR SINE MIR 12 241 -21 306 0 0 0 chr11 145224339 145224373 -3559099 + (TG)n Simple_repeat Simple_repeat 1 34 0 1955 144 35 50 chr11 145226242 145226638 -3556834 - MLT1B LTR MaLR 0 390 1 259 244 126 25 chr11 145226676 145226795 -3556677 - MIR SINE MIR -1 261 131 1478 172 64 0 chr11 145227013 145227137 -3556335 - AluJb SINE Alu -46 266 151 642 26 0 0 chr11 145227137 145227213 -3556259 + (TTTC)n Simple_repeat Simple_repeat 4 79 0 1478 172 64 0 chr11 145227213 145227338 -3556134 - AluJb SINE Alu -161 151 1 241 206 73 0 chr11 145227595 145227663 -3555809 - MIR SINE MIR -70 192 120 222 242 0 61 chr11 145227701 145227767 -3555705 + MIR SINE MIR 83 144 -64 356 365 83 32 chr11 145229433 145229998 -3553474 - L2 LINE L2 -573 2741 2148 318 339 68 17 chr11 145230246 145230423 -3553049 - MIR SINE MIR -44 218 33 2355 110 0 0 chr11 145230612 145230913 -3552559 - AluSg SINE Alu -9 301 1 570 269 129 36 chr11 145230936 145231541 -3551931 + L2 LINE L2 2534 3270 -2 1175 149 44 99 chr11 145232472 145232763 -3550709 + MER33 DNA MER1_type 1 272 -2313 2286 99 7 0 chr11 145232763 145233057 -3550415 + AluSq SINE Alu 1 296 -17 1175 149 44 99 chr11 145233057 145233108 -3550364 + MER33 DNA MER1_type 272 324 0 303 189 11 21 chr11 145235847 145235942 -3547530 + (TG)n Simple_repeat Simple_repeat 1 94 0 335 317 18 18 chr11 145236040 145236207 -3547265 + (TG)n Simple_repeat Simple_repeat 1 167 0 240 319 130 23 chr11 145237480 145237678 -3545794 + MIR SINE MIR 41 247 -15 1973 140 10 29 chr11 145238485 145238793 -3544679 + AluSx SINE Alu 1 302 -10 191 299 0 103 chr11 145240395 145240431 -3543041 - MIR SINE MIR -85 123 85 621 224 89 34 chr11 145240431 145240610 -3542862 - MER5A DNA MER1_type 0 189 1 191 299 0 103 chr11 145240610 145240690 -3542782 - MIR SINE MIR -123 85 19 211 241 37 0 chr11 145240952 145241006 -3542466 - L2 LINE L2 -17 3255 3200 452 188 47 16 chr11 145241456 145241584 -3541888 - LTR41 LTR ERVL -641 132 1 261 308 71 30 chr11 145241650 145241819 -3541653 - L2 LINE L2 -181 3091 2916 403 228 129 102 chr11 145242328 145242692 -3540780 - MLT1A2 LTR MaLR 0 374 1 189 0 0 0 chr11 145246253 145246274 -3537198 + (A)n Simple_repeat Simple_repeat 1 21 0 231 329 0 0 chr11 145247295 145247374 -3536098 - MIR SINE MIR 0 262 184 25 0 0 0 chr11 145248214 145248239 -3535233 + AT_rich Low_complexity Low_complexity 1 25 0 384 260 25 5 chr11 145248598 145248713 -3534759 + MIR SINE MIR 50 166 -42 456 19 0 0 chr11 145249598 145249651 -3533821 + (CA)n Simple_repeat Simple_repeat 1 53 0 196 295 103 0 chr11 145251405 145251483 -3531989 + L3 LINE CR1 1341 1426 -151 2010 128 0 3 chr11 145253945 145254227 -3529245 + AluSx SINE Alu 14 294 -18 236 329 7 11 chr11 145254246 145254382 -3529090 - MIR SINE MIR -63 145 22 286 279 0 0 chr11 145255674 145255753 -3527719 + (CATATA)n Simple_repeat Simple_repeat 4 82 0 332 285 89 42 chr11 145255785 145255999 -3527473 - L1ME3A LINE L1 -13 6157 5934 397 333 19 13 chr11 145256077 145256236 -3527236 + MIR SINE MIR 66 225 -37 522 283 73 11 chr11 145257120 145257328 -3526144 - MIR SINE MIR -1 261 42 1276 203 90 0 chr11 145257374 145257640 -3525832 - MER7A DNA MER2_type -57 289 2 2115 72 91 0 chr11 145257903 145258179 -3525293 + AluSp SINE Alu 2 302 -11 353 264 28 9 chr11 145258983 145259089 -3524383 + MER58C DNA MER1_type 108 215 0 278 336 39 10 chr11 145259103 145259207 -3524265 - MIR SINE MIR -78 130 24 2050 123 0 10 chr11 145259977 145260270 -3523202 + AluSx SINE Alu 1 290 -22 204 40 0 0 chr11 145260310 145260335 -3523137 + (GTTTG)n Simple_repeat Simple_repeat 2 26 0 262 159 9 75 chr11 145261481 145261588 -3521884 + GA-rich Low_complexity Low_complexity 3 102 0 450 0 0 0 chr11 145261785 145261835 -3521637 + (TCC)n Simple_repeat Simple_repeat 3 52 0 240 59 0 0 chr11 145262434 145262468 -3521004 + (TG)n Simple_repeat Simple_repeat 1 34 0 475 276 26 0 chr11 145262921 145263037 -3520435 - MIR SINE MIR -93 169 51 1387 146 45 0 chr11 145263328 145263596 -3519876 + L1MB3 LINE L1 5897 6176 -7 341 263 0 75 chr11 145263620 145263753 -3519719 + MER5B DNA MER1_type 50 172 -6 317 276 52 26 chr11 145264856 145264972 -3518500 - MIR SINE MIR -98 164 46 414 214 348 5 chr11 145265111 145265298 -3518174 + MIR SINE MIR 2 252 -10 2203 53 0 19 chr11 145265384 145265649 -3517823 - AluY SINE Alu -13 298 39 2370 106 3 0 chr11 145265765 145266068 -3517404 + AluSx SINE Alu 1 304 -8 210 250 60 12 chr11 145266202 145266286 -3517186 - MIR3 SINE MIR -44 164 77 183 383 62 0 chr11 145266384 145266512 -3516960 - L2 LINE L2 -1 3271 3136 569 249 6 40 chr11 145266952 145267125 -3516347 + L1MC5 LINE L1 7760 7926 -35 366 107 0 0 chr11 145267622 145267678 -3515794 + (TG)n Simple_repeat Simple_repeat 1 56 0 347 177 10 0 chr11 145267855 145267951 -3515521 + GA-rich Low_complexity Low_complexity 2 98 0 430 257 183 17 chr11 145269597 145269772 -3513700 - MIR SINE MIR 0 262 59 21 0 0 0 chr11 145270269 145270290 -3513182 + AT_rich Low_complexity Low_complexity 1 21 0 1771 183 0 7 chr11 145270419 145270719 -3512753 + AluJb SINE Alu 3 300 -12 26 30 0 0 chr11 145270731 145270764 -3512708 + AT_rich Low_complexity Low_complexity 1 33 0 1885 181 0 0 chr11 145272376 145272668 -3510804 + AluJb SINE Alu 1 292 -20 2351 76 31 0 chr11 145273142 145273433 -3510039 - AluY SINE Alu -11 300 1 422 253 7 68 chr11 145273564 145273715 -3509757 - MIR SINE MIR -67 141 8 224 245 57 0 chr11 145273723 145273776 -3509696 + L3b LINE CR1 1407 1462 -121 2423 105 0 0 chr11 145274276 145274589 -3508883 + AluSq SINE Alu 1 313 0 596 271 239 4 chr11 145275048 145275295 -3508177 + L2 LINE L2 3009 3313 0 1013 195 0 0 chr11 145276593 145276792 -3506680 - FRAM SINE Alu 0 199 1 489 320 28 11 chr11 145277017 145277195 -3506277 - MIR SINE MIR -70 192 12 210 261 43 43 chr11 145277466 145277535 -3505937 - L3 LINE CR1 -2 1575 1507 495 232 90 77 chr11 145279341 145279574 -3503898 - L2 LINE L2 -1 3312 3077 207 239 22 0 chr11 145279661 145279707 -3503765 - L2 LINE L2 -16 3256 3210 353 297 82 51 chr11 145282542 145282737 -3500735 - MIR SINE MIR -50 212 12 210 266 16 16 chr11 145283903 145283967 -3499505 - L2 LINE L2 -219 3053 2990 521 293 59 75 chr11 145284338 145284645 -3498827 + L2 LINE L2 3012 3313 0 666 299 20 15 chr11 145284997 145285194 -3498278 - MIR3 SINE MIR -1 207 10 216 281 172 23 chr11 145285398 145285526 -3497946 - L3 LINE CR1 -212 1365 1219 316 240 120 16 chr11 145285555 145285680 -3497792 + L3b LINE CR1 1254 1391 -192 462 288 106 24 chr11 145286134 145286304 -3497168 - MIR3 SINE MIR -9 199 16 266 221 49 139 chr11 145287658 145287780 -3495692 - MIR3 SINE MIR -39 169 59 26 30 0 0 chr11 145289258 145289291 -3494181 + AT_rich Low_complexity Low_complexity 1 33 0 31 26 0 0 chr11 145289450 145289488 -3493984 + AT_rich Low_complexity Low_complexity 1 38 0 2184 131 49 9 chr11 145290974 145291324 -3492148 - MLT1A1 LTR MaLR -1 364 1 681 13 0 0 chr11 145291378 145291456 -3492016 + (TTTTA)n Simple_repeat Simple_repeat 3 80 0 763 171 0 0 chr11 145291457 145291574 -3491898 - FLAM_C SINE Alu -25 118 2 196 233 0 0 chr11 145292777 145292820 -3490652 + MIR SINE MIR 38 80 -182 198 0 0 0 chr11 145293597 145293619 -3489853 + (CTATT)n Simple_repeat Simple_repeat 1 22 0 1433 276 100 11 chr11 145293712 145294320 -3489152 - L1MC4 LINE L1 -143 7899 7238 1548 225 121 0 chr11 145294323 145294745 -3488727 - L1MC4 LINE L1 -956 7086 6614 3898 131 56 0 chr11 145294746 145295427 -3488045 - Tigger3b DNA MER2_type 0 1231 513 1253 175 52 89 chr11 145295429 145295811 -3487661 - Tigger3b DNA MER2_type -863 368 1 380 293 84 0 chr11 145295860 145296051 -3487421 - L1MC4 LINE L1 -1378 6664 6458 215 204 45 0 chr11 145296469 145296513 -3486959 + GA-rich Low_complexity Low_complexity 1 46 0 354 23 0 0 chr11 145296642 145296685 -3486787 + (CA)n Simple_repeat Simple_repeat 1 43 0 202 327 154 0 chr11 145297016 145297126 -3486346 + L2 LINE L2 3134 3260 -12 2002 118 3 30 chr11 145297987 145298306 -3485166 + AluSx SINE Alu 2 312 0 306 272 37 0 chr11 145300092 145300173 -3483299 - MIR SINE MIR -71 191 108 266 242 92 17 chr11 145300403 145300523 -3482949 + L2 LINE L2 3180 3308 -5 387 0 0 0 chr11 145301014 145301057 -3482415 + (CA)n Simple_repeat Simple_repeat 2 44 0 315 0 0 0 chr11 145301056 145301091 -3482381 + (GA)n Simple_repeat Simple_repeat 2 36 0 * 397 254 196 0 chr11 145302195 145302333 -3481139 - MIR SINE MIR -74 188 24 192 298 221 0 chr11 145302407 145302511 -3480961 - MIR SINE MIR -8 254 128 644 160 0 0 chr11 145302967 145303073 -3480399 + FLAM_A SINE Alu 37 142 0 222 305 24 0 chr11 145305674 145305756 -3477716 + CT-rich Low_complexity Low_complexity 2 85 0 4180 185 30 58 chr11 145305828 145306708 -3476764 - L1MD1 LINE L1 0 6242 5432 2487 99 0 0 chr11 145306708 145307012 -3476460 - AluSx SINE Alu -8 304 1 4180 185 30 58 chr11 145307012 145307966 -3475506 - L1MD1 LINE L1 -810 5432 4453 410 287 180 0 chr11 145307976 145308126 -3475346 + MIR SINE MIR 64 240 -22 1807 132 28 21 chr11 145308285 145308594 -3474878 - AluSx SINE Alu 0 312 1 774 254 95 30 chr11 145308712 145308959 -3474513 + MIR SINE MIR 4 262 0 637 332 29 5 chr11 145310780 145310988 -3472484 + MIR SINE MIR 7 219 -43 795 266 107 49 chr11 145312463 145312965 -3470507 + Charlie8 DNA MER1_type 1 520 -1897 472 282 141 15 chr11 145313597 145313803 -3469669 + MIR SINE MIR 31 262 0 180 266 31 0 chr11 145314072 145314136 -3469336 + MER5B DNA MER1_type 106 171 -7 296 220 70 30 chr11 145314140 145314240 -3469232 + MER5A DNA MER1_type 3 106 -83 182 388 15 0 chr11 145314315 145314382 -3469090 + L2 LINE L2 3203 3270 -2 265 248 110 18 chr11 145314803 145314912 -3468560 + MIR SINE MIR 32 150 -112 482 287 164 5 chr11 145315086 145315281 -3468191 - MIR SINE MIR -20 242 17 2454 216 61 7 chr11 145315305 145315893 -3467579 - MLT1E3 LTR MaLR 0 624 5 420 285 8 8 chr11 145316778 145316901 -3466571 + L2 LINE L2 3191 3313 0 211 304 33 11 chr11 145317072 145317164 -3466308 + MIR SINE MIR 57 150 -112 184 308 10 58 chr11 145317298 145317402 -3466070 - MIR SINE MIR -111 151 53 1814 217 81 28 chr11 145318259 145318729 -3464743 - LTR42 LTR ERVL 0 495 1 467 257 49 14 chr11 145318988 145319132 -3464340 + MIR SINE MIR 114 262 0 196 259 12 74 chr11 145319333 145319414 -3464058 + MER5A DNA MER1_type 98 173 -16 247 268 89 27 chr11 145319515 145319627 -3463845 + MIR SINE MIR 19 137 -71 484 267 21 75 chr11 145319629 145319816 -3463656 - L2 LINE L2 0 3313 3137 437 254 25 42 chr11 145319994 145320112 -3463360 - L2 LINE L2 0 3272 3157 415 298 40 85 chr11 145321357 145321472 -3462000 - MIR SINE MIR -3 259 159 2300 110 0 0 chr11 145321472 145321780 -3461692 - AluSg SINE Alu -2 308 1 415 298 40 85 chr11 145321780 145321912 -3461560 - MIR SINE MIR -103 159 23 261 267 13 0 chr11 145321965 145322040 -3461432 + MER103 DNA DNA 1 76 -90 205 280 0 0 chr11 145322514 145322564 -3460908 + CT-rich Low_complexity Low_complexity 3 52 0 246 297 237 17 chr11 145323541 145323659 -3459813 + MIR SINE MIR 45 188 -74 195 100 0 0 chr11 145324340 145324370 -3459102 + (TG)n Simple_repeat Simple_repeat 1 30 0 354 278 122 0 chr11 145324617 145324732 -3458740 + L2 LINE L2 3144 3272 0 492 111 0 0 chr11 145324742 145324823 -3458649 + (TGGA)n Simple_repeat Simple_repeat 4 84 0 842 161 6 0 chr11 145324839 145325013 -3458459 + (TGGA)n Simple_repeat Simple_repeat 1 175 0 453 66 0 0 chr11 145325050 145325111 -3458361 + (TGGA)n Simple_repeat Simple_repeat 1 61 0 1224 89 0 0 chr11 145325154 145325334 -3458138 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 414 0 0 0 chr11 145326554 145326600 -3456872 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 2487 78 0 0 chr11 145326737 145327032 -3456440 + AluY SINE Alu 1 295 -16 1125 132 0 18 chr11 145328636 145328803 -3454669 - AluSg/x SINE Alu -18 294 131 221 291 13 25 chr11 145329610 145329689 -3453783 - MIR SINE MIR -122 140 63 2502 71 0 7 chr11 145331222 145331530 -3451942 + AluY SINE Alu 1 306 -5 2364 110 0 3 chr11 145332006 145332314 -3451158 - AluSx SINE Alu -5 307 1 448 297 116 46 chr11 145332936 145333020 -3450452 - L2 LINE L2 0 3313 3236 1708 188 30 22 chr11 145333020 145333382 -3450090 - MLT1A1 LTR MaLR 0 365 1 448 297 116 46 chr11 145333382 145333728 -3449744 - L2 LINE L2 -77 3236 2853 2270 105 13 3 chr11 145334605 145334911 -3448561 + AluSc SINE Alu 1 309 0 337 296 87 0 chr11 145335058 145335173 -3448299 - L2 LINE L2 -7 3265 3141 308 310 104 70 chr11 145335990 145336490 -3446982 - L2 LINE L2 -704 2610 2094 225 0 0 0 chr11 145337948 145337973 -3445499 + (T)n Simple_repeat Simple_repeat 1 25 0 461 113 34 45 chr11 145338084 145338261 -3445211 + (TTATA)n Simple_repeat Simple_repeat 3 177 0 2542 122 13 10 chr11 145338297 145338692 -3444780 - MER1A DNA MER1_type -99 430 35 1152 191 75 66 chr11 145339440 145339802 -3443670 + MLT1A1 LTR MaLR 1 365 0 641 264 84 10 chr11 145340224 145340523 -3442949 + LTR16B LTR ERVL 138 458 -6 264 234 13 13 chr11 145341567 145341644 -3441828 + HAL1 LINE L1 294 370 -2137 1047 296 177 13 chr11 145341647 145342347 -3441125 + HAL1 LINE L1 424 1238 -1269 286 299 125 0 chr11 145342375 145342519 -3440953 + LTR16B LTR ERVL 56 217 -247 272 295 90 6 chr11 145342550 145342716 -3440756 + LTR16B LTR ERVL 284 463 -1 1889 266 111 33 chr11 145342720 145343618 -3439854 + HAL1 LINE L1 1237 2204 -303 273 320 39 39 chr11 145344905 145345058 -3438414 - L2 LINE L2 -1 3312 3160 221 234 0 0 chr11 145346536 145346583 -3436889 - L3 LINE CR1 -1 1576 1530 234 366 49 14 chr11 145346634 145346776 -3436696 - L3 LINE CR1 -451 1126 980 809 92 15 61 chr11 145346842 145346973 -3436499 + AluSp/q SINE Alu 174 298 -15 187 306 87 83 chr11 145347614 145347856 -3435616 + L2 LINE L2 3030 3272 0 298 351 61 12 chr11 145349185 145349350 -3434122 + MIR SINE MIR 12 184 -78 605 321 54 5 chr11 145350707 145350928 -3432544 - MIR SINE MIR -13 249 18 282 260 0 29 chr11 145351263 145351367 -3432105 + (TA)n Simple_repeat Simple_repeat 2 102 0 208 233 167 11 chr11 145351437 145351527 -3431945 + L2 LINE L2 3168 3271 -1 185 202 238 36 chr11 145351536 145351620 -3431852 - MIR SINE MIR -156 106 6 290 309 114 0 chr11 145351623 145351746 -3431726 + MIR SINE MIR 70 206 -56 185 250 0 0 chr11 145352023 145352067 -3431405 - L2 LINE L2 -8 3305 3262 332 278 164 58 chr11 145352334 145352766 -3430706 - L1MC4a LINE L1 -1482 6326 5849 344 257 29 37 chr11 145353742 145353878 -3429594 - MIR SINE MIR -108 154 20 549 259 69 69 chr11 145354386 145354618 -3428854 + MIR SINE MIR 25 256 -6 242 349 12 0 chr11 145354834 145354920 -3428552 - MIR3 SINE MIR -3 205 119 457 204 111 31 chr11 145355398 145355560 -3427912 - MIR SINE MIR -26 236 62 341 253 11 0 chr11 145355572 145355663 -3427809 - MIR SINE MIR -4 258 167 348 311 68 7 chr11 145355755 145355903 -3427569 + MIR SINE MIR 46 202 -60 2429 74 0 7 chr11 145356076 145356373 -3427099 - AluSg SINE Alu -15 295 1 430 277 67 83 chr11 145356910 145357078 -3426394 - L2 LINE L2 -2 3311 3142 916 99 8 0 chr11 145357078 145357209 -3426263 + FLAM_C SINE Alu 1 132 -1 430 277 67 83 chr11 145357209 145357224 -3426248 - L2 LINE L2 -171 3142 3128 1847 179 14 0 chr11 145357224 145357521 -3425951 + AluJb SINE Alu 6 306 -6 430 277 67 83 chr11 145357521 145357697 -3425775 - L2 LINE L2 -185 3128 2957 362 241 24 108 chr11 145357697 145357863 -3425609 - MER5B DNA MER1_type 0 178 27 187 235 24 71 chr11 145358003 145358088 -3425384 - MER5A DNA MER1_type -83 106 26 248 285 43 30 chr11 145358333 145358445 -3425027 + MIR SINE MIR 28 144 -64 434 290 40 51 chr11 145359223 145359343 -3424129 - MER63A DNA MER1_type -1514 174 55 2833 75 5 0 chr11 145359343 145359716 -3423756 - THE1C LTR MaLR 0 375 1 434 290 40 51 chr11 145359716 145359771 -3423701 - MER63A DNA MER1_type -1633 55 1 626 229 16 49 chr11 145359911 145360094 -3423378 - FRAM SINE Alu 0 176 1 202 211 193 0 chr11 145361369 145361426 -3422046 + MIR SINE MIR 23 90 -172 198 118 0 0 chr11 145361562 145361596 -3421876 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 245 354 146 6 chr11 145361989 145362167 -3421305 + MIR SINE MIR 48 250 -12 566 298 144 41 chr11 145363048 145363879 -3419593 + L2 LINE L2 2395 3303 -10 231 242 0 0 chr11 145364496 145364595 -3418877 + GA-rich Low_complexity Low_complexity 1 99 0 356 279 13 58 chr11 145365048 145365202 -3418270 - MIR SINE MIR -44 218 72 452 329 26 0 chr11 145365472 145365627 -3417845 - MIR SINE MIR -6 256 98 1775 140 21 0 chr11 145365661 145365940 -3417532 - AluJo SINE Alu -25 287 3 278 278 42 0 chr11 145366522 145366594 -3416878 + MIR SINE MIR 117 191 -71 185 290 185 37 chr11 145368222 145368384 -3415088 - L3b LINE CR1 -205 1378 1193 315 122 0 0 chr11 145370439 145370488 -3412984 + (T)n Simple_repeat Simple_repeat 1 49 0 5257 256 131 30 chr11 145371842 145373620 -3409852 + HAL1 LINE L1 1 2059 -448 2082 139 0 32 chr11 145373620 145373929 -3409543 + AluSx SINE Alu 1 299 -13 5257 256 131 30 chr11 145373929 145374419 -3409053 + HAL1 LINE L1 2059 2498 -9 2397 52 21 3 chr11 145374425 145374711 -3408761 - AluSc SINE Alu -18 291 1 397 260 178 20 chr11 145376367 145376513 -3406959 - MER5A DNA MER1_type -7 182 14 521 256 133 0 chr11 145376617 145376797 -3406675 - MER3 DNA MER1_type -5 204 1 197 286 0 0 chr11 145376844 145376893 -3406579 + L2 LINE L2 3145 3193 -79 534 229 0 49 chr11 145376929 145377051 -3406421 - L2 LINE L2 -1 3271 3156 1687 180 97 48 chr11 145377254 145377504 -3405968 - MLT1B LTR MaLR 0 390 115 1993 115 49 0 chr11 145377504 145377790 -3405682 - AluSx SINE Alu -12 300 1 1687 180 97 48 chr11 145377790 145377911 -3405561 - MLT1B LTR MaLR -275 115 1 348 335 97 10 chr11 145377912 145378118 -3405354 + MIR SINE MIR 18 241 -21 204 67 0 0 chr11 145378652 145378682 -3404790 + (TG)n Simple_repeat Simple_repeat 2 31 0 275 364 9 9 chr11 145381593 145381703 -3401769 - L2 LINE L2 -5 3308 3199 262 213 0 0 chr11 145382249 145382296 -3401176 - MIR SINE MIR -142 120 74 2316 97 37 0 chr11 145383781 145384080 -3399392 + AluSq SINE Alu 3 312 -1 261 269 143 8 chr11 145384207 145384326 -3399146 + MIR SINE MIR 72 206 -56 225 389 56 9 chr11 145384464 145384572 -3398900 + MIR SINE MIR 40 152 -56 374 177 114 0 chr11 145384678 145384757 -3398715 - MLT1G1 LTR MaLR -1 589 502 766 211 154 81 chr11 145384766 145385064 -3398408 - MLT1G1 LTR MaLR -195 400 81 871 171 51 19 chr11 145386765 145386923 -3396549 - AluJb SINE Alu -9 303 141 2292 70 0 20 chr11 145386932 145387230 -3396242 - AluY SINE Alu -2 309 18 396 350 14 36 chr11 145391887 145392027 -3391445 - MIR3 SINE MIR -41 167 31 220 264 0 57 chr11 145394650 145394703 -3388769 - L2 LINE L2 -81 3191 3142 257 349 71 77 chr11 145394908 145395077 -3388395 - L2 LINE L2 -36 3236 3069 188 159 0 45 chr11 145395133 145395177 -3388295 + L2 LINE L2 3272 3313 0 293 231 66 22 chr11 145395547 145395638 -3387834 - L3 LINE CR1 -280 1297 1203 296 227 165 52 chr11 145396255 145396352 -3387120 - L2 LINE L2 -8 3264 3157 394 308 90 33 chr11 145397212 145397458 -3386014 + MIR SINE MIR 3 261 -1 2303 211 82 9 chr11 145397863 145398426 -3385046 + MER90 LTR ERV1 10 613 -1 987 135 7 0 chr11 145398946 145399094 -3384378 - AluJ SINE Alu -1 311 163 2718 46 0 0 chr11 145399095 145399399 -3384073 + AluY SINE Alu 1 304 -7 1050 159 0 44 chr11 145399552 145399734 -3383738 - AluJ SINE Alu -138 174 1 344 281 8 41 chr11 145400396 145400517 -3382955 - MIR SINE MIR -134 128 12 273 309 0 52 chr11 145401621 145401718 -3381754 + L2 LINE L2 3221 3312 -1 290 252 313 0 chr11 145403288 145403435 -3380037 + MIR SINE MIR 52 244 -18 254 273 141 8 chr11 145404346 145404424 -3379048 + MIR SINE MIR 99 165 -97 2325 156 65 22 chr11 145404424 145404919 -3378553 + L1MB8 LINE L1 5654 6169 -9 254 273 141 8 chr11 145404919 145404961 -3378511 + MIR SINE MIR 165 235 -27 2113 127 26 10 chr11 145405602 145405909 -3377563 - AluSx SINE Alu 0 312 1 241 377 140 7 chr11 145406369 145406711 -3376761 + L2 LINE L2 2621 3006 -266 894 118 7 39 chr11 145409201 145409354 -3374118 - Charlie3 DNA MER1_type -4 2706 2559 286 165 9 28 chr11 145409367 145409476 -3373996 + (TTATA)n Simple_repeat Simple_repeat 1 107 0 643 237 7 0 chr11 145409681 145409820 -3373652 + MLT1A2 LTR MaLR 235 374 0 708 224 5 52 chr11 145410068 145410260 -3373212 - MER53 DNA DNA 0 189 7 183 292 28 14 chr11 145410458 145410530 -3372942 + MIR3 SINE MIR 120 192 -16 214 240 19 106 chr11 145410607 145410659 -3372813 - MER5A DNA MER1_type -87 102 62 1863 101 116 8 chr11 145410659 145410926 -3372546 + AluSg SINE Alu 1 296 -14 214 240 19 106 chr11 145410926 145410977 -3372495 - MER5A DNA MER1_type -127 62 8 728 259 39 8 chr11 145411907 145412162 -3371310 + LTR16B LTR ERVL 190 452 -12 774 283 71 33 chr11 145412682 145413046 -3370426 - LTR16C LTR ERVL -2 489 112 635 95 0 0 chr11 145413502 145413597 -3369875 - AluSg/x SINE Alu -2 310 216 274 217 43 0 chr11 145413808 145413877 -3369595 - HsTC2 DNA Tc2 -2 1896 1825 774 265 65 29 chr11 145413945 145414190 -3369282 - MIR SINE MIR 0 262 9 630 126 0 0 chr11 145414975 145415062 -3368410 - AluS SINE Alu -225 88 2 264 125 0 0 chr11 145415088 145415128 -3368344 - MADE1 DNA Mariner -35 45 6 342 352 42 7 chr11 145415778 145415920 -3367552 + MER5A DNA MER1_type 3 149 -40 312 339 111 38 chr11 145416123 145416412 -3367060 - L2 LINE L2 -912 2402 2093 2033 136 0 17 chr11 145416548 145416843 -3366629 + AluSx SINE Alu 1 290 -22 3806 111 15 8 chr11 145417350 145417873 -3365599 - MER1A DNA MER1_type 0 527 1 736 318 24 8 chr11 145417879 145418134 -3365338 - MIR SINE MIR 0 262 4 532 318 67 55 chr11 145419526 145419777 -3363695 + L1MEd LINE L1 569 816 -5303 2266 114 0 7 chr11 145419777 145420085 -3363387 + AluSq SINE Alu 1 306 -7 532 318 67 55 chr11 145420085 145420217 -3363255 + L1MEd LINE L1 816 945 -5174 2174 88 29 0 chr11 145420217 145420491 -3362981 + AluSc SINE Alu 1 282 -27 532 318 67 55 chr11 145420491 145420592 -3362880 + L1MEd LINE L1 945 1063 -5056 1036 243 114 37 chr11 145420592 145420995 -3362477 + MER57B LTR ERV1 1 434 0 532 318 67 55 chr11 145420995 145421017 -3362455 + L1MEd LINE L1 1063 1083 -5036 680 202 27 60 chr11 145422475 145422658 -3360814 + FRAM SINE Alu 1 176 0 2157 86 0 11 chr11 145424019 145424297 -3359175 + AluSx SINE Alu 1 275 -37 328 338 45 8 chr11 145474598 145474731 -3308741 + MER5A DNA MER1_type 3 140 -49 297 339 111 38 chr11 145474943 145475232 -3308240 - L2 LINE L2 -912 2402 2093 1890 136 0 17 chr11 145475368 145475663 -3307809 + AluSx SINE Alu 1 290 -22 3763 111 15 8 chr11 145476170 145476693 -3306779 - MER1A DNA MER1_type 0 527 1 728 318 24 8 chr11 145476699 145476954 -3306518 - MIR SINE MIR 0 262 4 468 278 69 85 chr11 145478367 145478602 -3304870 + L1ME4a LINE L1 587 824 -5486 2223 114 0 7 chr11 145478602 145478910 -3304562 + AluSq SINE Alu 1 306 -7 468 278 69 85 chr11 145478910 145479042 -3304430 + L1ME4a LINE L1 824 957 -5353 2127 88 29 0 chr11 145479042 145479316 -3304156 + AluSc SINE Alu 1 282 -27 468 278 69 85 chr11 145479316 145479417 -3304055 + L1ME4a LINE L1 957 1058 -5252 940 243 114 37 chr11 145479417 145479820 -3303652 + MER57B LTR ERV1 1 434 0 468 278 69 85 chr11 145479820 145480298 -3303174 + L1ME4a LINE L1 1058 1542 -4768 1869 142 25 0 chr11 145480298 145480573 -3302899 + AluSx SINE Alu 1 282 -30 281 26 0 26 chr11 145480577 145480616 -3302856 + (TAAAA)n Simple_repeat Simple_repeat 3 40 0 468 278 69 85 chr11 145480616 145480723 -3302749 + L1ME4a LINE L1 1545 1669 -4641 392 237 17 8 chr11 145480744 145480862 -3302610 + L1ME4a LINE L1 5105 5223 -906 29 0 0 0 chr11 145481412 145481441 -3302031 + AT_rich Low_complexity Low_complexity 1 29 0 1652 189 88 53 chr11 145481964 145482451 -3301021 - MLT1D LTR MaLR 0 505 2 407 194 10 0 chr11 145482503 145482606 -3300866 + (TG)n Simple_repeat Simple_repeat 1 104 0 509 240 7 0 chr11 145482626 145482780 -3300692 + (TG)n Simple_repeat Simple_repeat 1 155 0 1658 236 142 43 chr11 145482802 145483788 -3299684 + HAL1 LINE L1 826 1909 -598 705 224 80 64 chr11 145483921 145484233 -3299239 + HAL1 LINE L1 2181 2497 -10 314 281 34 41 chr11 145484354 145484500 -3298972 - MIR SINE MIR -41 221 77 194 394 14 0 chr11 145484543 145484614 -3298858 - MIR SINE MIR -118 90 19 2107 133 3 0 chr11 145484638 145484946 -3298526 - AluSq SINE Alu -4 309 1 208 217 132 70 chr11 145485313 145485442 -3298030 - MER5B DNA MER1_type 0 178 42 288 0 0 0 chr11 145485711 145485743 -3297729 + (A)n Simple_repeat Simple_repeat 1 32 0 216 0 0 0 chr11 145485863 145485887 -3297585 + (A)n Simple_repeat Simple_repeat 1 24 0 354 279 140 17 chr11 145486036 145486215 -3297257 - MIR SINE MIR -38 224 24 2274 33 0 0 chr11 145486354 145486624 -3296848 + L1PA5 LINE L1 5883 6152 -2 500 300 101 65 chr11 145486746 145487061 -3296411 + L1ME4a LINE L1 5395 5734 -370 1990 154 0 3 chr11 145487061 145487367 -3296105 + AluJb SINE Alu 1 305 -7 500 300 101 65 chr11 145487367 145487528 -3295944 + L1ME4a LINE L1 5734 5888 -216 252 296 159 0 chr11 145487804 145487892 -3295580 - L2 LINE L2 -21 3292 3191 453 229 0 10 chr11 145487904 145488000 -3295472 + Tigger5 DNA MER2_type 1 95 -2228 2152 101 11 0 chr11 145488000 145488287 -3295185 - AluSx SINE Alu -22 290 1 248 288 45 0 chr11 145488657 145488723 -3294749 - L2 LINE L2 0 3272 3204 378 158 0 0 chr11 145488737 145488786 -3294686 + (TA)n Simple_repeat Simple_repeat 2 53 -24 375 23 0 0 chr11 145488786 145488830 -3294642 + (TG)n Simple_repeat Simple_repeat 2 45 0 378 158 0 0 chr11 145488830 145488856 -3294616 + (TA)n Simple_repeat Simple_repeat 52 77 0 630 264 74 23 chr11 145492255 145492471 -3291001 - MIR SINE MIR -16 246 20 375 23 0 0 chr11 145492487 145492531 -3290941 + (CA)n Simple_repeat Simple_repeat 1 44 0 3079 51 3 5 chr11 145492537 145492926 -3290546 - L1PA7 LINE L1 -6 6148 5761 201 367 83 71 chr11 145493136 145493376 -3290096 + L2 LINE L2 2992 3234 -38 180 111 0 0 chr11 145494885 145494912 -3288560 + (CTCA)n Simple_repeat Simple_repeat 1 27 0 200 312 97 11 chr11 145494912 145495005 -3288467 - L2 LINE L2 -10 3303 3203 213 39 0 0 chr11 145495394 145495420 -3288052 + (CCA)n Simple_repeat Simple_repeat 1 26 0 2102 97 0 35 chr11 145495465 145495755 -3287717 + AluSq SINE Alu 1 280 -33 180 0 0 0 chr11 145495757 145495777 -3287695 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 25 0 0 0 chr11 145496186 145496211 -3287261 + AT_rich Low_complexity Low_complexity 1 25 0 659 130 30 0 chr11 145496211 145496311 -3287161 - U6 snRNA snRNA -4 103 1 23 92 0 0 chr11 145496483 145496548 -3286924 + AT_rich Low_complexity Low_complexity 1 65 0 1134 172 0 11 chr11 145496667 145496853 -3286619 - AluJb SINE Alu -17 295 112 2320 112 0 0 chr11 145497122 145497425 -3286047 - AluSq SINE Alu -10 303 1 630 167 0 0 chr11 145497487 145497589 -3285883 - AluJb SINE Alu -210 102 1 1522 205 7 17 chr11 145498178 145498480 -3284992 - AluJo SINE Alu -13 299 1 2039 143 0 0 chr11 145498531 145498818 -3284654 + AluJb SINE Alu 5 291 -21 314 340 25 56 chr11 145499065 145499262 -3284210 - L1ME LINE L1 -626 5495 5305 1618 193 17 7 chr11 145499757 145500047 -3283425 - AluJb SINE Alu -17 295 3 956 120 71 66 chr11 145500698 145500881 -3282591 + AluJo SINE Alu 113 296 -16 6081 131 23 32 chr11 145501637 145502718 -3280754 + MER11C LTR ERVK 1 1071 0 6290 115 29 7 chr11 145503458 145504553 -3278919 - L1MA2 LINE L1 -4 6300 5184 270 0 0 0 chr11 145504727 145504757 -3278715 + (A)n Simple_repeat Simple_repeat 1 30 0 280 247 227 32 chr11 145505198 145505445 -3278027 - L2 LINE L2 -99 3214 2920 205 313 87 0 chr11 145505650 145505765 -3277707 - L3 LINE CR1 -6 1571 1447 181 253 21 95 chr11 145505780 145505875 -3277597 - L3 LINE CR1 -277 1300 1213 371 255 223 25 chr11 145507121 145507278 -3276194 - MIR SINE MIR -24 238 51 770 297 200 10 chr11 145507306 145507696 -3275776 - L2 LINE L2 -2 3311 2848 339 148 45 34 chr11 145508382 145508470 -3275002 + MLT1I LTR MaLR 318 406 -3 540 296 78 41 chr11 145508574 145508817 -3274655 + MIR SINE MIR 1 252 -10 2038 154 0 0 chr11 145508927 145509226 -3274246 + AluSx SINE Alu 1 299 -13 333 217 122 9 chr11 145509901 145510016 -3273456 - MIR SINE MIR -10 252 125 349 286 194 34 chr11 145510128 145510303 -3273169 + MIR SINE MIR 36 238 -24 2186 112 13 0 chr11 145510472 145510776 -3272696 - AluSx SINE Alu -4 308 1 368 251 90 54 chr11 145511169 145511336 -3272136 + MER5A DNA MER1_type 16 188 -1 21 0 0 0 chr11 145513702 145513723 -3269749 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr11 145516248 145516269 -3267203 + (T)n Simple_repeat Simple_repeat 1 21 0 237 241 50 38 chr11 145520347 145520434 -3263038 - MIR SINE MIR -92 116 59 280 333 22 0 chr11 145523582 145523672 -3259800 + MIR SINE MIR 36 127 -81 1704 136 3 94 chr11 145524089 145524398 -3259074 + AluSx SINE Alu 1 281 -31 216 0 0 0 chr11 145524401 145524425 -3259047 + (TA)n Simple_repeat Simple_repeat 2 25 0 928 244 130 9 chr11 145525280 145525595 -3257877 + MLT1C LTR MaLR 115 467 0 191 341 89 16 chr11 145525635 145525881 -3257591 + L2 LINE L2 1939 2202 -1112 1666 182 10 7 chr11 145526000 145526174 -3257298 - AluJo SINE Alu -15 297 120 396 0 0 0 chr11 145526174 145526218 -3257254 + (TTA)n Simple_repeat Simple_repeat 2 45 0 1666 182 10 7 chr11 145526218 145526339 -3257133 - AluJo SINE Alu -192 120 1 699 264 65 16 chr11 145527639 145527885 -3255587 - MIR SINE MIR 0 262 5 205 122 0 24 chr11 145528219 145528260 -3255212 - MIR3 SINE MIR -6 202 163 789 194 0 54 chr11 145528271 145528457 -3255015 - MER5A DNA MER1_type 0 189 14 186 103 0 0 chr11 145529133 145529162 -3254310 + (TCTA)n Simple_repeat Simple_repeat 2 30 0 318 26 0 0 chr11 145530792 145530831 -3252641 + (TG)n Simple_repeat Simple_repeat 1 39 0 2079 139 0 13 chr11 145530922 145531232 -3252240 + AluJb SINE Alu 1 306 -6 2654 33 3 0 chr11 145531405 145531712 -3251760 - AluY SINE Alu -3 308 1 21 36 0 0 chr11 145532165 145532193 -3251279 + AT_rich Low_complexity Low_complexity 1 28 0 386 325 41 12 chr11 145532294 145532463 -3251009 + L2 LINE L2 2881 3054 -218 1233 262 89 48 chr11 145533301 145534085 -3249387 - L2 LINE L2 0 3313 2503 2433 31 42 0 chr11 145534117 145534404 -3249068 - AluY SINE Alu -12 299 1 22094 163 35 32 chr11 145534404 145539937 -3243535 - L1 LINE L1 -2202 5363 11 440 307 0 9 chr11 145540143 145540257 -3243215 + MER81 DNA DNA 2 114 0 246 233 68 14 chr11 145540348 145540421 -3243051 + MIR SINE MIR 65 141 -121 333 323 55 37 chr11 145540620 145540948 -3242524 - L1M4 LINE L1 -1488 4658 4325 5629 115 49 1 chr11 145540948 145542256 -3241216 - L1PA11 LINE L1 -1 6173 4809 464 297 72 72 chr11 145542607 145542755 -3240717 - L2 LINE L2 -2 3311 3164 535 226 130 13 chr11 145542755 145542985 -3240487 - MIR SINE MIR -4 258 2 464 297 72 72 chr11 145542985 145543156 -3240316 - L2 LINE L2 -148 3165 2992 836 206 130 111 chr11 145543306 145543738 -3239734 + L1MC4a LINE L1 5736 6175 -1633 520 283 163 16 chr11 145543859 145544318 -3239154 + L1MC4 LINE L1 6461 7068 -974 23 0 0 0 chr11 145545648 145545671 -3237801 + AT_rich Low_complexity Low_complexity 1 23 0 215 378 44 15 chr11 145546370 145546505 -3236967 + L3 LINE CR1 1436 1574 -3 269 286 0 12 chr11 145547011 145547095 -3236377 - L1MC4 LINE L1 -26 8016 7934 344 288 126 31 chr11 145547267 145547649 -3235823 - L1ME3A LINE L1 -223 5947 5530 406 236 53 26 chr11 145547701 145547940 -3235532 - L1P1 LINE L1 -703 5452 5197 782 253 90 35 chr11 145548222 145548657 -3234815 - L1ME3A LINE L1 -1365 4781 4323 716 280 70 21 chr11 145548657 145548793 -3234679 + MIR SINE MIR 8 163 -99 2177 102 23 3 chr11 145548793 145549097 -3234375 + AluSg SINE Alu 1 310 0 716 280 70 21 chr11 145549097 145549203 -3234269 + MIR SINE MIR 163 262 0 402 285 190 11 chr11 145549203 145549582 -3233890 - L1ME3A LINE L1 -1825 4321 3875 23 0 0 0 chr11 145549640 145549663 -3233809 + AT_rich Low_complexity Low_complexity 1 23 0 360 78 0 0 chr11 145549663 145549714 -3233758 - L1PA7 LINE L1 -3 6151 6101 275 131 98 16 chr11 145550947 145551008 -3232464 - MIR SINE MIR -15 247 182 317 350 28 21 chr11 145551496 145551639 -3231833 + MIR3 SINE MIR 20 163 -45 25 0 0 0 chr11 145551912 145551937 -3231535 + AT_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr11 145553337 145553369 -3230103 + AT_rich Low_complexity Low_complexity 1 32 0 258 336 98 47 chr11 145553444 145553658 -3229814 + L3b LINE CR1 1267 1491 -92 371 329 59 29 chr11 145554066 145554236 -3229236 + MIR SINE MIR 17 191 -71 648 209 124 6 chr11 145556711 145556888 -3226584 - MIR SINE MIR -21 241 44 285 245 20 39 chr11 145557234 145557336 -3226136 + GA-rich Low_complexity Low_complexity 2 101 0 280 217 33 40 chr11 145557424 145557576 -3225896 + (TTATA)n Simple_repeat Simple_repeat 5 155 0 675 206 53 11 chr11 145557728 145557917 -3225555 + L1MD3 LINE L1 7788 7984 -11 1966 128 7 26 chr11 145558133 145558437 -3225035 + AluSg SINE Alu 1 298 -12 2387 84 0 0 chr11 145558437 145558736 -3224736 + AluY SINE Alu 1 299 -12 1233 262 89 48 chr11 145558768 145559552 -3223920 + L2 LINE L2 2503 3313 0 386 325 41 12 chr11 145560390 145560559 -3222913 - L2 LINE L2 -218 3054 2881 21 36 0 0 chr11 145560660 145560688 -3222784 + AT_rich Low_complexity Low_complexity 1 28 0 2637 33 3 0 chr11 145561141 145561446 -3222026 + AluY SINE Alu 1 306 -5 591 134 9 18 chr11 145562078 145562190 -3221282 + HY1 scRNA scRNA 1 111 -1 2273 150 72 5 chr11 145562359 145562760 -3220712 + MSTA LTR MaLR 1 428 0 238 281 116 33 chr11 145562960 145563081 -3220391 - MIR SINE MIR -62 146 16 2185 179 110 75 chr11 145563258 145563966 -3219506 + LTR1B LTR ERV1 1 733 -93 23 0 0 0 chr11 145564010 145564033 -3219439 + AT_rich Low_complexity Low_complexity 1 23 0 228 298 50 33 chr11 145564150 145564271 -3219201 - L1MC/D LINE L1 -1909 5899 5777 447 131 31 9 chr11 145564359 145564467 -3219005 + L1M LINE L1 5295 5404 -774 986 300 80 39 chr11 145564468 145565119 -3218353 - L1ME3A LINE L1 -86 6018 5340 1391 265 83 17 chr11 145565122 145565722 -3217750 - L1ME3A LINE L1 -887 5193 4554 229 233 33 44 chr11 145565914 145566004 -3217468 - L1ME3A LINE L1 -5937 133 45 230 324 14 0 chr11 145566061 145566135 -3217337 + CT-rich Low_complexity Low_complexity 5 79 0 298 245 60 52 chr11 145566139 145566388 -3217084 + L1MCa LINE L1 956 1206 -5220 461 104 26 0 chr11 145566388 145566465 -3217007 + Alu SINE Alu 232 310 -2 388 266 174 34 chr11 145566466 145566673 -3216799 + L1MCa LINE L1 1176 1411 -5015 203 0 37 0 chr11 145566788 145566815 -3216657 + (TC)n Simple_repeat Simple_repeat 2 29 0 2104 113 20 0 chr11 145567185 145567478 -3215994 + AluSx SINE Alu 1 299 -13 2587 67 0 3 chr11 145567716 145568030 -3215442 + AluSp SINE Alu 1 313 0 234 91 0 0 chr11 145568221 145568254 -3215218 + (A)n Simple_repeat Simple_repeat 1 33 0 4836 194 65 44 chr11 145568466 145569056 -3214416 + L1MB8 LINE L1 3883 4459 -1719 1564 193 16 10 chr11 145569056 145569362 -3214110 + AluJo SINE Alu 3 310 -2 4836 194 65 44 chr11 145569362 145569662 -3213810 + L1MB8 LINE L1 4459 4751 -1427 2289 108 0 0 chr11 145569662 145569959 -3213513 + AluSg SINE Alu 3 299 -11 4836 194 65 44 chr11 145569959 145570483 -3212989 + L1MB8 LINE L1 4751 5262 -916 1564 186 0 4 chr11 145570483 145570757 -3212715 + AluJo SINE Alu 40 312 0 4836 194 65 44 chr11 145570757 145571562 -3211910 + L1MB8 LINE L1 5262 6169 -9 22 0 0 0 chr11 145573163 145573185 -3210287 + AT_rich Low_complexity Low_complexity 1 22 0 1210 176 0 5 chr11 145573986 145574191 -3209281 - AluJb SINE Alu -10 302 99 2223 112 0 10 chr11 145575210 145575522 -3207950 - AluSp SINE Alu 0 313 5 629 241 89 6 chr11 145575931 145576089 -3207383 + MIR SINE MIR 45 215 -47 894 62 86 0 chr11 145576204 145576332 -3207140 + MER85 DNA T2_type 1 139 0 427 269 30 22 chr11 145576539 145576673 -3206799 + MIR SINE MIR 46 180 -82 1670 203 72 5 chr11 145577857 145578232 -3205240 + MER63B DNA MER1_type 4 403 -33 2442 56 0 20 chr11 145578668 145578972 -3204500 + AluY SINE Alu 1 298 -13 356 317 149 9 chr11 145580022 145580243 -3203229 - L2 LINE L2 -1020 2294 2043 187 328 116 37 chr11 145580787 145581055 -3202417 - L2 LINE L2 -427 2887 2599 1681 235 90 25 chr11 145581212 145581732 -3201740 - L1ME1 LINE L1 -10 6156 5603 498 202 135 47 chr11 145581732 145581925 -3201547 - MER6B DNA MER2_type 0 210 1 1007 194 130 32 chr11 145581927 145582202 -3201270 - L1ME1 LINE L1 -564 5602 5275 746 205 0 0 chr11 145582202 145582329 -3201143 - FLAM_A SINE Alu -4 129 3 1007 194 130 32 chr11 145582329 145582460 -3201012 - L1ME1 LINE L1 -891 5275 5158 6917 51 11 1 chr11 145582481 145583339 -3200133 - L1PA7 LINE L1 -11 6143 5278 656 198 70 16 chr11 145583313 145583500 -3199972 - L1ME1 LINE L1 -948 5198 5002 * 2528 78 0 0 chr11 145583501 145583810 -3199662 + AluSc SINE Alu 1 309 0 618 167 0 0 chr11 145584143 145584245 -3199227 + AluJb SINE Alu 1 102 -210 2290 112 0 0 chr11 145584307 145584610 -3198862 + AluSq SINE Alu 1 303 -10 1089 177 0 11 chr11 145584879 145585065 -3198407 + AluJb SINE Alu 112 295 -17 23 92 0 0 chr11 145585184 145585249 -3198223 + AT_rich Low_complexity Low_complexity 1 65 0 660 130 30 0 chr11 145585422 145585522 -3197950 + U6 snRNA snRNA 1 103 -4 25 0 0 0 chr11 145585522 145585547 -3197925 + AT_rich Low_complexity Low_complexity 1 25 0 2042 103 40 30 chr11 145585956 145586256 -3197216 - AluSq SINE Alu -10 303 1 3084 224 36 44 chr11 145586256 145586658 -3196814 - L1ME1 LINE L1 -1388 4758 4355 1544 190 17 24 chr11 145586658 145586948 -3196524 + AluJo SINE Alu 7 294 -18 3084 224 36 44 chr11 145586948 145587506 -3195966 - L1ME1 LINE L1 -1791 4355 3805 53 30 0 0 chr11 145587634 145587701 -3195771 + GC_rich Low_complexity Low_complexity 1 67 0 225 0 0 0 chr11 145587714 145587739 -3195733 + (A)n Simple_repeat Simple_repeat 1 25 0 2132 218 75 32 chr11 145587740 145588423 -3195049 - L1M4 LINE L1 -1054 5092 4381 611 189 66 78 chr11 145588487 145588730 -3194742 + MER20B DNA MER1_type 544 783 0 599 39 0 0 chr11 145588772 145588849 -3194623 + L1PA5 LINE L1 6078 6154 0 199 332 48 59 chr11 145589064 145589251 -3194221 + MIR3 SINE MIR 16 200 -8 481 255 133 5 chr11 145589313 145589509 -3193963 + MIR SINE MIR 39 259 -3 341 255 43 21 chr11 145590131 145590225 -3193247 - MER5A DNA MER1_type 0 189 94 265 311 113 9 chr11 145590789 145590895 -3192577 + MER5A DNA MER1_type 73 189 0 3725 166 42 10 chr11 145591002 145591721 -3191751 + L1MC2 LINE L1 5454 6195 -149 378 213 81 37 chr11 145591906 145592042 -3191430 + L1MC2 LINE L1 6194 6335 -9 1278 212 0 0 chr11 145592074 145592305 -3191167 - AluJb SINE Alu -81 231 1 1812 159 47 52 chr11 145593221 145593304 -3190168 + MLT1B LTR MaLR 1 83 -307 933 204 83 43 chr11 145593304 145593534 -3189938 + MER8 DNA MER2_type 1 239 0 1812 159 47 52 chr11 145593534 145593833 -3189639 + MLT1B LTR MaLR 83 381 -9 306 0 0 0 chr11 145593946 145593980 -3189492 + (CA)n Simple_repeat Simple_repeat 2 35 0 313 316 102 15 chr11 145594937 145595133 -3188339 + MIR SINE MIR 34 246 -16 2322 113 0 0 chr11 145595254 145595556 -3187916 - AluSg SINE Alu -8 302 1 326 348 43 0 chr11 145595982 145596095 -3187377 - MIR3 SINE MIR -9 199 77 368 86 0 17 chr11 145596095 145596153 -3187319 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 326 348 43 0 chr11 145596153 145596180 -3187292 - MIR3 SINE MIR -131 77 53 678 232 96 56 chr11 145596526 145596776 -3186696 - MIR SINE MIR -2 260 1 38 68 0 0 chr11 145596776 145596849 -3186623 + AT_rich Low_complexity Low_complexity 1 73 0 1078 141 33 5 chr11 145597080 145597264 -3186208 - Tigger7 DNA MER2_type -1 2586 2398 * 1866 154 46 3 chr11 145597260 145597565 -3185907 - Tigger7 DNA MER2_type -415 318 1 351 154 77 0 chr11 145598510 145598575 -3184897 - MIR SINE MIR -11 251 182 27 62 0 0 chr11 145598724 145598772 -3184700 + AT_rich Low_complexity Low_complexity 1 48 0 185 303 0 61 chr11 145599387 145599453 -3184019 - L2 LINE L2 -213 3059 2998 260 344 70 0 chr11 145599864 145600021 -3183451 - MIR SINE MIR 0 262 95 360 293 77 85 chr11 145601397 145601759 -3181713 - L1MEd LINE L1 -1152 1338 893 228 232 18 0 chr11 145601764 145601820 -3181652 - HAL1 LINE L1 -1493 1014 958 227 167 0 0 chr11 145603716 145603752 -3179720 - U2 snRNA snRNA -152 36 1 456 251 108 36 chr11 145604206 145604460 -3179012 - L1ME LINE L1 -593 5577 5311 296 227 68 11 chr11 145605015 145605103 -3178369 + MIR SINE MIR 170 262 0 475 248 93 31 chr11 145605863 145606024 -3177448 + MIR SINE MIR 92 262 0 414 243 10 0 chr11 145606339 145606442 -3177030 + L1MD3 LINE L1 7882 7985 -10 231 283 91 10 chr11 145606561 145606660 -3176812 - L1ME LINE L1 -668 5453 5347 4207 161 40 16 chr11 145606938 145607833 -3175639 + L1MA7 LINE L1 5138 6056 -235 22 0 0 0 chr11 145607935 145607957 -3175515 + AT_rich Low_complexity Low_complexity 1 22 0 9512 187 80 50 chr11 145608137 145610217 -3173255 + L1MC1 LINE L1 20 2037 -4389 2249 98 3 0 chr11 145610217 145610513 -3172959 - AluY SINE Alu -14 297 1 9512 187 80 50 chr11 145610513 145610597 -3172875 + L1MC1 LINE L1 2037 2117 -4309 927 124 43 32 chr11 145610597 145610783 -3172689 + L1MA9 LINE L1 6125 6312 0 9512 187 80 50 chr11 145610783 145611537 -3171935 + L1MC1 LINE L1 2117 3039 -3387 3934 133 18 3 chr11 145611537 145612161 -3171311 + MER41B LTR ERV1 1 633 -2 9512 187 80 50 chr11 145612161 145612453 -3171019 + L1MC1 LINE L1 3039 3321 -3105 17818 149 41 12 chr11 145612455 145614225 -3169247 + L1PB1 LINE L1 1 1717 -5150 2196 111 0 0 chr11 145614225 145614514 -3168958 - AluSx SINE Alu -23 289 1 17818 149 41 12 chr11 145614514 145618604 -3164868 + L1PB1 LINE L1 1717 6082 -785 288 0 0 0 chr11 145618604 145618636 -3164836 + (CAA)n Simple_repeat Simple_repeat 2 33 0 17818 149 41 12 chr11 145618636 145619445 -3164027 + L1PB1 LINE L1 6082 6866 -1 7597 194 33 29 chr11 145619438 145620741 -3162731 + L1MC1 LINE L1 3307 4604 -2009 * 1564 191 17 23 chr11 145620741 145621040 -3162432 - AluJo SINE Alu -9 303 7 7597 194 33 29 chr11 145621040 145621442 -3162030 + L1MC1 LINE L1 4604 5003 -1610 2017 89 37 4 chr11 145621442 145621760 -3161712 + AluY SINE Alu 1 327 0 7597 194 33 29 chr11 145621760 145622262 -3161210 + L1MC1 LINE L1 5003 5502 -1111 2615 37 0 0 chr11 145622262 145622558 -3160914 + AluY SINE Alu 1 296 -15 7597 194 33 29 chr11 145622558 145623628 -3159844 + L1MC1 LINE L1 5502 6600 -13 2108 108 4 0 chr11 145624019 145624296 -3159176 + AluSg SINE Alu 1 278 -32 189 0 0 0 chr11 145624296 145624317 -3159155 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 1383 150 185 0 chr11 145624481 145624735 -3158737 + AluJb SINE Alu 2 302 0 568 343 110 25 chr11 145624887 145625568 -3157904 - L2 LINE L2 0 3272 2534 327 362 50 20 chr11 145625702 145625901 -3157571 + MIR SINE MIR 51 255 -7 24 0 0 0 chr11 145626559 145626583 -3156889 + AT_rich Low_complexity Low_complexity 1 24 0 423 332 70 16 chr11 145627428 145627615 -3155857 + MIR3 SINE MIR 6 202 -6 1909 91 42 0 chr11 145629804 145630091 -3153381 + L1MA2 LINE L1 6002 6300 -4 704 272 5 37 chr11 145630153 145630344 -3153128 + Charlie8 DNA MER1_type 84 268 -2149 271 252 153 23 chr11 145630554 145630685 -3152787 + MIR SINE MIR 104 251 -11 345 328 62 13 chr11 145631717 145632025 -3151447 + L1MCc LINE L1 1187 1509 -4914 10985 155 30 92 chr11 145632026 145632906 -3150566 + L1M4c LINE L1 16 949 -5433 664 153 36 0 chr11 145632906 145633017 -3150455 + FLAM_C SINE Alu 8 122 -21 10985 155 30 92 chr11 145633017 145634123 -3149349 + L1M4c LINE L1 949 2123 -4259 2192 75 0 4 chr11 145634123 145634401 -3149071 - AluY SINE Alu 0 311 35 10985 155 30 92 chr11 145634401 145634919 -3148553 + L1M4c LINE L1 2123 2446 -3936 1534 184 74 9 chr11 145634919 145635245 -3148227 + MER7A DNA MER2_type 1 345 -1 10985 155 30 92 chr11 145635245 145635461 -3148011 + L1M4c LINE L1 2446 2674 -3708 10659 197 72 22 chr11 145635480 145638910 -3144562 + L1MB3 LINE L1 1 6598 -236 1051 291 58 18 chr11 145638995 145639705 -3143767 + L1MCc LINE L1 1807 2544 -4578 419 320 56 21 chr11 145639705 145639980 -3143492 + L1MDa LINE L1 1824 2161 -740 212 250 0 0 chr11 145640364 145640412 -3143060 + A-rich Low_complexity Low_complexity 2 49 0 3498 239 70 36 chr11 145640428 145641721 -3141751 + L1M4 LINE L1 6 1254 -5390 4188 145 1 10 chr11 145641721 145642412 -3141060 + L1PA16 LINE L1 5480 6164 -2 3498 239 70 36 chr11 145642412 145643301 -3140171 + L1M4 LINE L1 1254 2112 -4532 2318 98 3 0 chr11 145643301 145643606 -3139866 + AluSp SINE Alu 1 306 -7 3498 239 70 36 chr11 145643606 145644283 -3139189 + L1M4 LINE L1 2112 3071 -3573 647 224 105 0 chr11 145644286 145644505 -3138967 - L1M4 LINE L1 -751 5395 5154 * 9635 167 37 24 chr11 145644495 145647458 -3136014 - L1MA4A LINE L1 -4 7001 4005 1567 154 4 32 chr11 145647459 145647738 -3135734 - AluSx SINE Alu -2 310 40 1702 105 26 0 chr11 145647738 145647965 -3135507 + AluSx SINE Alu 62 296 -16 1513 147 43 18 chr11 145647986 145648265 -3135207 - L1MA4A LINE L1 -4463 2386 2101 6667 137 45 28 chr11 145648265 145649429 -3134043 - Tigger2 DNA MER2_type -1534 1184 1 207 218 18 36 chr11 145649847 145649902 -3133570 + L2 LINE L2 2715 2768 -546 298 73 0 0 chr11 145649911 145649952 -3133520 + L1PA10 LINE L1 5911 5951 -217 367 188 0 0 chr11 145651888 145651952 -3131520 + LTR40b LTR ERVL 398 461 -1 414 259 15 46 chr11 145652606 145652737 -3130735 - MIR SINE MIR -52 210 84 321 327 216 10 chr11 145652897 145653096 -3130376 + MIR SINE MIR 23 262 0 328 326 30 56 chr11 145654186 145654453 -3129019 + L1M4 LINE L1 3839 4098 -2546 2032 268 149 10 chr11 145655244 145656152 -3127320 - L2 LINE L2 -2 3311 2256 312 333 8 23 chr11 145657062 145657194 -3126278 - LTR33 LTR ERVL -363 158 29 21 0 0 0 chr11 145657665 145657686 -3125786 + AT_rich Low_complexity Low_complexity 1 21 0 304 370 48 14 chr11 145657698 145657844 -3125628 - MIR3 SINE MIR -42 166 16 301 235 76 23 chr11 145658709 145658841 -3124631 + L1M4 LINE L1 5127 5265 -1379 2017 154 42 8 chr11 145659759 145660114 -3123358 - MER46B DNA MER2_type 0 231 1 1092 193 38 124 chr11 145661464 145661884 -3121588 + Looper DNA T2_type 2 385 -1173 642 244 104 12 chr11 145661885 145662049 -3121423 - MER58A DNA MER1_type -1 223 45 2145 205 79 23 chr11 145662080 145662636 -3120836 + Looper DNA T2_type 379 965 -593 620 164 132 13 chr11 145662630 145662782 -3120690 + Looper DNA T2_type 1385 1554 -4 * 268 323 11 0 chr11 145663130 145663223 -3120249 + L2 LINE L2 3179 3272 0 222 37 0 0 chr11 145664291 145664318 -3119154 + (CCCCCT)n Simple_repeat Simple_repeat 3 29 0 4981 85 22 20 chr11 145664318 145665386 -3118086 + SVA Other Other 60 1004 -382 341 330 4 27 chr11 145665404 145665559 -3117913 - L1M3 LINE L1 -527 5594 5453 576 259 65 58 chr11 145665768 145666062 -3117410 + L1ME3 LINE L1 4704 4999 -1147 1370 261 142 45 chr11 145666199 145667026 -3116446 + L1ME3 LINE L1 5255 6161 -1 241 271 12 12 chr11 145667135 145667220 -3116252 + L1MC4a LINE L1 3593 3677 -2469 904 144 144 0 chr11 145667289 145667456 -3116016 - MSTA LTR MaLR -237 191 1 1122 53 13 7 chr11 145667650 145667800 -3115672 - L1PA10 LINE L1 -3 6165 6015 1588 186 30 3 chr11 145667913 145668209 -3115263 + AluJo SINE Alu 1 304 -8 626 277 59 43 chr11 145668238 145668661 -3114811 + L1ME3 LINE L1 467 896 -5174 910 160 111 24 chr11 145668662 145668882 -3114590 - MSTA LTR MaLR -14 414 197 1728 263 68 34 chr11 145668882 145669784 -3113688 + L1ME3 LINE L1 931 1862 -4218 501 249 100 46 chr11 145669854 145670135 -3113337 + L1ME3 LINE L1 3809 4104 -1976 1983 267 74 46 chr11 145670147 145670364 -3113108 + L1ME3 LINE L1 4170 4379 -1721 1806 164 39 22 chr11 145670364 145670723 -3112749 + MLT1A1 LTR MaLR 1 365 0 1983 267 74 46 chr11 145670723 145671202 -3112270 + L1ME3 LINE L1 4379 4843 -1257 2487 66 0 0 chr11 145671202 145671507 -3111965 + AluY SINE Alu 1 305 -6 1983 267 74 46 chr11 145671507 145671991 -3111481 + L1ME3 LINE L1 4843 5386 -714 501 280 16 16 chr11 145672035 145672221 -3111251 + L1ME3 LINE L1 5904 6089 -7 495 283 72 18 chr11 145672246 145672525 -3110947 + L1MC4a LINE L1 3663 3956 -2190 988 236 67 41 chr11 145672633 145673022 -3110450 + L1MC4a LINE L1 5655 6053 -1755 207 0 0 0 chr11 145673088 145673111 -3110361 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 1109 336 84 30 chr11 145673504 145674171 -3109301 + L3 LINE CR1 420 1122 -455 194 279 269 0 chr11 145674557 145674661 -3108811 - MIR3 SINE MIR -22 186 55 2358 85 35 41 chr11 145675178 145675544 -3107928 + THE1B LTR MaLR 1 364 0 1932 206 119 43 chr11 145675603 145676182 -3107290 + MLT1E3 LTR MaLR 1 623 -1 2665 66 0 3 chr11 145677001 145677348 -3106124 + L1PA6 LINE L1 5809 6154 0 268 100 100 0 chr11 145677354 145677404 -3106068 + L1MB2 LINE L1 6115 6169 -2 222 250 0 36 chr11 145677544 145677600 -3105872 + GA-rich Low_complexity Low_complexity 3 56 0 605 241 21 78 chr11 145677866 145678057 -3105415 - LTR33A LTR ERVL -319 204 25 477 0 0 0 chr11 145678785 145678838 -3104634 + (TA)n Simple_repeat Simple_repeat 2 54 0 2932 199 68 27 chr11 145679038 145679741 -3103731 + MER44D DNA MER2_type 2 605 0 26 50 0 0 chr11 145681055 145681095 -3102377 + AT_rich Low_complexity Low_complexity 1 40 0 198 0 0 0 chr11 145681138 145681160 -3102312 + (TA)n Simple_repeat Simple_repeat 1 22 0 1786 191 6 30 chr11 145681360 145681695 -3101777 + Tigger7 DNA MER2_type 2 328 -2159 974 244 49 10 chr11 145682579 145682784 -3100688 + Tigger7 DNA MER2_type 24 236 -469 248 114 0 0 chr11 145682780 145682815 -3100657 + Tigger7 DNA MER2_type 2498 2532 -55 * 795 205 113 64 chr11 145683869 145684196 -3099276 + LTR37A LTR ERV1 84 426 0 14238 178 30 23 chr11 145684419 145691220 -3092252 + L1PB2 LINE L1 6 6862 -5 3578 215 43 14 chr11 145691269 145692112 -3091360 + Cheshire DNA MER1_type 32 898 -1522 29811 109 16 72 chr11 145692120 145698643 -3084829 + L1PA7 LINE L1 12 6151 -3 1774 163 19 3 chr11 145698679 145698999 -3084473 + Cheshire DNA MER1_type 882 1206 -1214 3268 184 41 13 chr11 145699007 145699718 -3083754 + Cheshire DNA MER1_type 1525 2255 -165 1188 299 91 32 chr11 145699718 145700443 -3083029 + L2 LINE L2 2322 3083 -230 291 289 0 0 chr11 145700472 145700548 -3082924 + L2 LINE L2 3237 3312 -1 183 80 0 0 chr11 145700606 145700631 -3082841 + (TA)n Simple_repeat Simple_repeat 1 25 0 427 382 56 37 chr11 145701157 145701618 -3081854 + L1ME LINE L1 865 1334 -5597 226 284 57 14 chr11 145701885 145702026 -3081446 + L1ME LINE L1 1298 1444 -4979 557 306 63 15 chr11 145702039 145702307 -3081165 + L1ME3 LINE L1 25 305 -6118 566 285 71 57 chr11 145702318 145703138 -3080334 + L1ME3 LINE L1 1679 2509 -4613 328 284 23 35 chr11 145703287 145703544 -3079928 + L1ME3 LINE L1 2724 2977 -4145 2914 204 25 20 chr11 145703564 145704217 -3079255 + L1MB7 LINE L1 5500 6155 -29 3009 253 77 46 chr11 145704229 145704300 -3079172 + L1ME3 LINE L1 2943 3010 -3931 1520 223 0 3 chr11 145704300 145704592 -3078880 + AluJb SINE Alu 2 292 -20 3009 253 77 46 chr11 145704592 145705686 -3077786 + L1ME3 LINE L1 3010 4179 -2762 2470 69 0 3 chr11 145705686 145705990 -3077482 + AluY SINE Alu 1 303 -8 3009 253 77 46 chr11 145705990 145706517 -3076955 + L1ME3 LINE L1 4179 4688 -2253 9872 120 4 1 chr11 145706527 145708785 -3074687 - L1PA8A LINE L1 -2 6129 3870 7115 142 34 22 chr11 145708788 145709368 -3074104 + L1P LINE L1 2648 3220 -2926 243 0 0 0 chr11 145709368 145709395 -3074077 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 7115 142 34 22 chr11 145709395 145710269 -3073203 + L1P LINE L1 3220 4192 -1954 * 42561 36 21 2 chr11 145710266 145716297 -3067175 + L1PA3 LINE L1 5 6154 -1 281 221 130 39 chr11 145716294 145716448 -3067024 + L1ME3 LINE L1 4970 5137 -1804 * 1243 204 108 3 chr11 145716506 145716840 -3066632 + L1ME3 LINE L1 6581 6949 -8 23 0 0 0 chr11 145716881 145716904 -3066568 + AT_rich Low_complexity Low_complexity 1 23 0 434 220 34 0 chr11 145717204 145717322 -3066150 + LTR37B LTR ERV1 347 468 0 343 242 0 74 chr11 145717846 145717995 -3065477 + MER31-int LTR ERV1 1164 1301 -3635 734 244 62 35 chr11 145718369 145718627 -3064845 - L1MC4a LINE L1 -1904 5904 5640 24 0 0 0 chr11 145718635 145718659 -3064813 + AT_rich Low_complexity Low_complexity 1 24 0 257 186 43 14 chr11 145718659 145718729 -3064743 - L1MC4a LINE L1 -2482 5326 5255 1819 169 0 13 chr11 145718987 145719288 -3064184 - AluJo SINE Alu -15 297 1 347 250 61 27 chr11 145719298 145719446 -3064026 - L1 LINE L1 -1112 5034 4882 438 320 115 48 chr11 145719491 145719955 -3063517 - L1 LINE L1 -1309 4837 4342 331 310 54 81 chr11 145720846 145721181 -3062291 + HAL1 LINE L1 1178 1503 -1004 5207 37 2 0 chr11 145721332 145721955 -3061517 + L1PA4 LINE L1 5532 6155 0 29 47 0 0 chr11 145722358 145722401 -3061071 + AT_rich Low_complexity Low_complexity 1 43 0 7357 93 7 23 chr11 145722885 145724040 -3059432 + L1MA2 LINE L1 5160 6304 0 24 0 0 0 chr11 145724040 145724064 -3059408 + AT_rich Low_complexity Low_complexity 1 24 0 2275 115 0 13 chr11 145724283 145724596 -3058876 - AluSx SINE Alu -3 309 1 268 319 77 66 chr11 145725587 145725769 -3057703 + MIR SINE MIR 48 231 -31 22 35 0 0 chr11 145727297 145727326 -3056146 + AT_rich Low_complexity Low_complexity 1 29 0 240 35 0 0 chr11 145728007 145728036 -3055436 + (CA)n Simple_repeat Simple_repeat 1 29 0 1714 187 3 10 chr11 145729526 145729826 -3053646 + AluJo SINE Alu 1 298 -14 569 24 123 0 chr11 145729861 145730114 -3053358 + (TA)n Simple_repeat Simple_repeat 1 283 0 743 302 83 50 chr11 145730232 145730871 -3052601 + L1MC4a LINE L1 5255 5914 -1894 836 63 0 27 chr11 145731011 145731122 -3052350 + AluSp/q SINE Alu 197 304 -9 190 0 0 0 chr11 145731307 145731328 -3052144 + (TTTTG)n Simple_repeat Simple_repeat 3 140 0 1971 121 7 40 chr11 145731328 145731627 -3051845 - AluSx SINE Alu -1 309 1 1167 81 7 0 chr11 145731843 145731992 -3051480 - AluSq SINE Alu -118 195 46 593 103 0 0 chr11 145731993 145732080 -3051392 + AluSp/q SINE Alu 215 301 -12 360 287 88 44 chr11 145732572 145732589 -3050883 - MIR SINE MIR 0 262 247 1784 161 17 32 chr11 145732589 145732937 -3050535 - MER2 DNA MER2_type -1 343 1 360 287 88 44 chr11 145732937 145733100 -3050372 - MIR SINE MIR -15 247 74 1972 142 3 0 chr11 145733123 145733419 -3050053 + AluSx SINE Alu 1 297 -15 218 217 159 14 chr11 145733771 145733840 -3049632 + L2 LINE L2 3186 3264 -8 24 0 0 0 chr11 145733880 145733904 -3049568 + AT_rich Low_complexity Low_complexity 1 24 0 363 330 80 45 chr11 145734638 145734709 -3048763 + MIR SINE MIR 30 97 -165 2234 132 11 30 chr11 145734709 145735080 -3048392 + THE1B LTR MaLR 1 364 0 11738 86 11 1 chr11 145735080 145736644 -3046828 + THE1B-int LTR MaLR 1 1580 0 2106 141 33 30 chr11 145736644 145737007 -3046465 + THE1B LTR MaLR 1 364 0 363 330 80 45 chr11 145737007 145737157 -3046315 + MIR SINE MIR 96 261 -1 22 0 0 0 chr11 145737268 145737290 -3046182 + AT_rich Low_complexity Low_complexity 1 22 0 1756 174 0 7 chr11 145738046 145738328 -3045144 + AluJo SINE Alu 1 280 -32 225 0 0 0 chr11 145738328 145738353 -3045119 + (TCTG)n Simple_repeat Simple_repeat 4 28 0 411 202 0 0 chr11 145738358 145738452 -3045020 + (TA)n Simple_repeat Simple_repeat 1 94 0 188 35 35 0 chr11 145739240 145739269 -3044203 + (GAAAA)n Simple_repeat Simple_repeat 1 30 0 568 100 38 0 chr11 145739313 145739393 -3044079 + U6 snRNA snRNA 1 83 -24 1425 155 44 71 chr11 145739956 145740252 -3043220 + AluJo SINE Alu 1 288 -24 296 185 25 8 chr11 145740256 145740375 -3043097 + (TA)n Simple_repeat Simple_repeat 1 121 0 28 0 0 0 chr11 145740380 145740408 -3043064 + AT_rich Low_complexity Low_complexity 1 28 0 387 286 116 0 chr11 145741835 145741982 -3041490 + MIR SINE MIR 28 191 -71 982 220 87 66 chr11 145742246 145742576 -3040896 - L1MC5 LINE L1 -36 7925 7577 1610 197 0 3 chr11 145742576 145742860 -3040612 - AluJo SINE Alu -29 283 1 982 220 87 66 chr11 145742860 145743093 -3040379 - L1MC5 LINE L1 -384 7577 7350 6860 56 38 24 chr11 145743102 145744047 -3039425 - L1PA7 LINE L1 0 6154 5191 456 88 0 0 chr11 145745005 145745073 -3038399 - AluSp/q SINE Alu -5 308 241 239 247 21 21 chr11 145745739 145745836 -3037636 + A-rich Low_complexity Low_complexity 4 100 0 285 197 167 106 chr11 145746697 145746829 -3036643 - MIR SINE MIR -56 206 67 190 284 274 0 chr11 145746976 145747071 -3036401 - MIR SINE MIR -136 126 6 212 318 78 23 chr11 145747958 145748087 -3035385 + MER5A DNA MER1_type 27 162 -27 1925 167 3 3 chr11 145748220 145748526 -3034946 + AluJb SINE Alu 1 306 -6 436 153 24 0 chr11 145749112 145749197 -3034275 + L1MA2 LINE L1 6209 6295 -9 21 36 0 0 chr11 145749929 145749957 -3033515 + AT_rich Low_complexity Low_complexity 1 28 0 34 0 0 0 chr11 145750234 145750268 -3033204 + AT_rich Low_complexity Low_complexity 1 34 0 2113 194 7 7 chr11 145750339 145750766 -3032706 + L1MC3 LINE L1 7344 7770 -15 389 293 56 56 chr11 145750768 145751000 -3032472 - MLT1K LTR MaLR -15 573 342 2489 70 0 0 chr11 145801211 145801512 -2981960 - AluY SINE Alu -10 301 1 299 276 8 73 chr11 145801547 145801601 -2981871 - L3 LINE CR1 -160 1417 1361 3508 131 54 8 chr11 145801601 145802105 -2981367 - MER1A DNA MER1_type 0 527 1 299 276 8 73 chr11 145802105 145802173 -2981299 - L3 LINE CR1 -216 1361 1303 181 253 67 27 chr11 145802361 145802436 -2981036 - L3 LINE CR1 -338 1239 1162 1472 199 13 3 chr11 145802449 145802750 -2980722 - L1MA7 LINE L1 -6 6285 5982 2019 105 60 84 chr11 145802848 145803229 -2980243 - THE1C LTR MaLR 0 375 4 21 0 0 0 chr11 145803775 145803796 -2979676 + AT_rich Low_complexity Low_complexity 1 21 0 11313 94 10 1 chr11 145805750 145807265 -2976207 - L1P3 LINE L1 -4926 1535 8 307 225 219 45 chr11 145807276 145807454 -2976018 - L1MC5 LINE L1 -645 7316 7108 28108 108 4 1 chr11 145807554 145811623 -2971849 - L1P LINE L1 -848 5298 1217 311 255 12 87 chr11 145811730 145811947 -2971525 + MLT1H LTR MaLR 196 515 -34 1163 261 128 26 chr11 145812021 145812512 -2970960 + MLT1H1 LTR MaLR 15 555 0 1871 321 86 18 chr11 145812512 145813591 -2969881 - MERVL LTR ERVL -1980 3505 2353 2189 126 0 3 chr11 145813667 145813977 -2969495 + AluSc SINE Alu 1 309 0 3580 224 68 26 chr11 145814950 145815886 -2967586 + L1MC4 LINE L1 6491 7466 -576 295 173 39 0 chr11 145816083 145816135 -2967337 - Ricksha DNA DNA -2341 905 852 723 277 0 5 chr11 145816136 145816320 -2967152 - MLT2B2 LTR ERVL -20 495 313 1186 241 50 66 chr11 145816460 145816650 -2966822 + L1MC5 LINE L1 6990 7181 -780 2017 133 0 13 chr11 145816650 145816958 -2966514 + AluJb SINE Alu 5 308 -4 1186 241 50 66 chr11 145816958 145817224 -2966248 + L1MC5 LINE L1 7181 7439 -522 323 222 32 0 chr11 145817225 145817288 -2966184 - MERVL LTR ERVL -3533 2231 2167 1606 169 29 111 chr11 145817296 145817675 -2965797 - Tigger3(Golem) DNA MER2_type -1 3028 1 1016 365 56 23 chr11 145817677 145818411 -2965061 - MERVL LTR ERVL -3601 2163 1406 342 246 44 0 chr11 145818435 145818452 -2965020 - L1MA10 LINE L1 0 6334 6318 3281 157 33 60 chr11 145818452 145819389 -2964083 - L1MB7 LINE L1 -9 6155 5272 609 111 67 0 chr11 145819490 145819580 -2963892 + FRAM SINE Alu 74 169 -7 1834 145 42 3 chr11 145820582 145820871 -2962601 + AluSx SINE Alu 1 300 -12 300 111 0 0 chr11 145820871 145820916 -2962556 + (GGAA)n Simple_repeat Simple_repeat 1 45 0 498 297 128 14 chr11 145821197 145821557 -2961915 + L1ME2 LINE L1 5529 5929 -235 226 312 39 0 chr11 145821835 145821912 -2961560 + MIR SINE MIR 122 201 -61 275 340 68 0 chr11 145822963 145823066 -2960406 - MIR3 SINE MIR -23 185 76 208 382 0 0 chr11 145823070 145823138 -2960334 - L2 LINE L2 -5 3267 3200 724 291 27 27 chr11 145823158 145823416 -2960056 + MIR SINE MIR 3 260 -2 226 213 0 93 chr11 145823578 145823653 -2959819 + L2 LINE L2 3183 3250 -22 216 0 0 0 chr11 145823657 145823681 -2959791 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 2431 82 0 0 chr11 145823757 145824061 -2959411 + AluY SINE Alu 1 304 -7 614 258 64 81 chr11 145824687 145824985 -2958487 + MLT1J LTR MaLR 215 507 -4 2160 98 17 10 chr11 145825386 145825682 -2957790 + AluSg SINE Alu 1 298 -12 455 230 63 70 chr11 145825686 145825755 -2957717 + L1ME4a LINE L1 5824 5892 -229 1756 127 27 57 chr11 145825755 145826054 -2957418 + AluJo SINE Alu 1 290 -22 455 230 63 70 chr11 145826054 145826271 -2957201 + L1ME4a LINE L1 5892 6108 -13 411 221 105 81 chr11 145826354 145826526 -2956946 - MLT1J2 LTR MaLR -1 449 274 2171 117 3 0 chr11 145826789 145827089 -2956383 - AluSq SINE Alu -12 301 1 299 342 42 0 chr11 145828142 145828262 -2955210 - L2 LINE L2 -10 3303 3179 2094 136 3 0 chr11 145828388 145828698 -2954774 + AluSx SINE Alu 1 311 -1 21 0 0 0 chr11 145828698 145828719 -2954753 + AT_rich Low_complexity Low_complexity 1 21 0 205 237 72 52 chr11 145828815 145828912 -2954560 + MIR SINE MIR 21 119 -89 192 349 0 36 chr11 145829388 145829471 -2954001 - L2 LINE L2 -115 3157 3078 570 218 67 0 chr11 145830039 145830209 -2953263 + MIR SINE MIR 69 252 -10 183 100 0 0 chr11 145830216 145830246 -2953226 + (TTA)n Simple_repeat Simple_repeat 1 30 0 349 225 194 0 chr11 145830757 145830886 -2952586 + MIR3 SINE MIR 39 192 -16 2162 165 94 30 chr11 145831791 145832886 -2950586 + L1MB7 LINE L1 4966 6173 -11 2418 140 23 48 chr11 145833994 145834239 -2949233 - MSTB LTR MaLR 0 426 195 1929 66 70 0 chr11 145834239 145834482 -2948990 - AluY SINE Alu -12 299 40 2418 140 23 48 chr11 145834482 145834673 -2948799 - MSTB LTR MaLR -231 195 1 386 266 11 11 chr11 145834997 145835091 -2948381 - MER96 DNA MER1_type? 0 175 82 269 59 0 0 chr11 145835313 145835347 -2948125 + AluSq SINE Alu 1 34 -268 5851 79 35 30 chr11 145835347 145836169 -2947303 + LTR12 LTR ERV1 1 826 0 2056 90 0 8 chr11 145836169 145836437 -2947035 + AluSq SINE Alu 31 296 -17 232 146 0 0 chr11 145837159 145837200 -2946272 - L2 LINE L2 -8 3305 3265 386 194 0 29 chr11 145839313 145839416 -2944056 + C-rich Low_complexity Low_complexity 6 105 0 193 259 86 74 chr11 145839557 145839638 -2943834 - MIR SINE MIR -61 147 66 2047 128 31 0 chr11 145839859 145840147 -2943325 - AluSx SINE Alu -6 306 10 244 291 41 87 chr11 145840725 145840897 -2942575 - L2 LINE L2 -190 3082 2919 290 259 44 74 chr11 145841224 145841359 -2942113 - MIR3 SINE MIR -35 173 43 2131 179 21 0 chr11 145841359 145841738 -2941734 + MLT1B LTR MaLR 4 390 0 191 133 0 50 chr11 145842124 145842184 -2941288 + (T)n Simple_repeat Simple_repeat 1 57 0 875 208 72 34 chr11 145842879 145843144 -2940328 - ORSL DNA AcHobo 0 275 1 760 164 0 0 chr11 145843194 145843310 -2940162 + FLAM_C SINE Alu 2 117 -26 233 118 20 0 chr11 145843316 145843367 -2940105 + (TA)n Simple_repeat Simple_repeat 2 53 0 1270 228 18 4 chr11 145843379 145843507 -2939965 + AluJb SINE Alu 1 126 -186 201 39 0 0 chr11 145843507 145843533 -2939939 + (TA)n Simple_repeat Simple_repeat 2 27 0 1270 228 18 4 chr11 145843533 145843676 -2939796 + AluJb SINE Alu 126 276 -36 275 0 29 0 chr11 145843682 145843717 -2939755 + (CAAA)n Simple_repeat Simple_repeat 3 38 0 2158 143 0 0 chr11 145843999 145844306 -2939166 + AluSx SINE Alu 1 307 -5 1115 156 108 3 chr11 145844539 145844881 -2938591 - L1M4 LINE L1 -710 5537 5139 566 54 40 0 chr11 145844881 145844955 -2938517 + MSTD LTR MaLR 1 77 -319 754 201 11 14 chr11 145844982 145845164 -2938308 - L1MDa LINE L1 -3806 2409 2231 2972 64 10 1 chr11 145845164 145845831 -2937641 - L1PA8 LINE L1 0 6172 5350 424 210 6 30 chr11 145845811 145845997 -2937475 - L1MDa LINE L1 -3953 2262 2125 * 1579 195 22 38 chr11 145846040 145846360 -2937112 + Tigger7 DNA MER2_type 2 326 -2165 2312 79 33 0 chr11 145846360 145846663 -2936809 + AluSq SINE Alu 1 313 0 1579 195 22 38 chr11 145846663 145846696 -2936776 + Tigger7 DNA MER2_type 326 2490 -1 396 246 115 21 chr11 145846701 145846892 -2936580 - L1MDa LINE L1 -4320 2076 1868 28 48 0 0 chr11 145847082 145847124 -2936348 + AT_rich Low_complexity Low_complexity 1 42 0 401 289 36 53 chr11 145847216 145847422 -2936050 - MER21B LTR ERV1 -52 811 640 1011 133 24 99 chr11 145847435 145847580 -2935892 + MER2 DNA MER2_type 17 171 -174 2095 109 4 0 chr11 145847580 145847854 -2935618 + AluSx SINE Alu 1 275 -37 216 0 0 0 chr11 145847859 145847883 -2935589 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1011 133 24 99 chr11 145847883 145847942 -2935530 + MER2 DNA MER2_type 175 211 -134 195 188 0 0 chr11 145847971 145848019 -2935453 + T-rich Low_complexity Low_complexity 1 48 0 1202 217 20 53 chr11 145848105 145848409 -2935063 - MER21B LTR ERV1 -265 598 305 509 61 0 0 chr11 145848411 145848477 -2934995 - AluSp/q SINE Alu -21 292 227 336 372 50 12 chr11 145848491 145848733 -2934739 + ERVL LTR ERVL 1018 1268 -4496 241 242 48 0 chr11 145848765 145848827 -2934645 - MER5A DNA MER1_type -76 113 49 1314 175 49 12 chr11 145849026 145849308 -2934164 + MER61C LTR ERV1 1 381 -53 24 0 0 0 chr11 145849308 145849332 -2934140 + AT_rich Low_complexity Low_complexity 1 24 0 1283 14 0 0 chr11 145849334 145849478 -2933994 - L1PA3 LINE L1 0 6155 6012 1561 191 12 41 chr11 145849591 145849936 -2933536 - L1M4 LINE L1 -558 5616 5282 23 0 0 53 chr11 145850228 145850249 -2933223 + AT_rich Low_complexity Low_complexity 1 21 -15 2258 83 0 10 chr11 145850249 145850537 -2932935 - AluSc SINE Alu -24 285 1 23 0 0 53 chr11 145850537 145850553 -2932919 + AT_rich Low_complexity Low_complexity 21 36 0 2439 128 49 20 chr11 145850560 145851006 -2932466 - L1MA7 LINE L1 -1 6290 5832 582 236 55 90 chr11 145851030 145851373 -2932099 - L1MEc LINE L1 -4771 1625 1295 783 344 67 5 chr11 145851845 145852232 -2931240 + L2 LINE L2 2039 2449 -865 307 116 58 58 chr11 145852300 145852369 -2931103 - L1MB8 LINE L1 -3 6175 6107 4597 182 25 9 chr11 145852407 145853309 -2930163 - L1MB4 LINE L1 -6 6174 5258 2460 87 0 0 chr11 145853479 145853778 -2929694 - AluSq SINE Alu -14 299 1 735 305 98 35 chr11 145853778 145854398 -2929074 + L2 LINE L2 2616 3268 -4 285 274 81 81 chr11 145856229 145856426 -2927046 + MIR SINE MIR 10 206 -56 25 75 0 0 chr11 145856477 145856530 -2926942 + AT_rich Low_complexity Low_complexity 1 53 0 283 175 0 0 chr11 145856605 145856645 -2926827 + Alu SINE Alu 1 40 -261 1503 112 0 24 chr11 145856748 145856954 -2926518 - AluSg SINE Alu -109 201 1 2978 196 67 42 chr11 145856964 145857307 -2926165 - L1MB4 LINE L1 -874 5272 4939 1757 166 7 39 chr11 145857307 145857614 -2925858 - AluJo SINE Alu -15 297 1 2978 196 67 42 chr11 145857614 145858042 -2925430 - L1MB4 LINE L1 -1207 4939 4481 1131 174 0 0 chr11 145858044 145858222 -2925250 - AluSg/x SINE Alu -2 308 131 1779 153 19 48 chr11 145858281 145858594 -2924878 - AluJb SINE Alu -3 309 6 691 88 71 26 chr11 145858597 145858710 -2924762 - MER61B LTR ERV1 0 425 308 43037 36 25 2 chr11 145858710 145864231 -2919241 + L1P1 LINE L1 31 5686 -469 212 271 0 17 chr11 145866608 145866667 -2916805 + T-rich Low_complexity Low_complexity 2 59 0 185 97 0 32 chr11 145867733 145867764 -2915708 - MIR SINE MIR -142 66 37 2304 95 0 0 chr11 145868260 145868556 -2914916 + AluSg SINE Alu 2 297 -13 458 265 152 48 chr11 145869845 145870154 -2913318 - L2 LINE L2 0 3272 2932 215 207 69 0 chr11 145870170 145870228 -2913244 - MIR SINE MIR -88 174 113 307 284 17 51 chr11 145870660 145870836 -2912636 + GA-rich Low_complexity Low_complexity 5 174 0 2141 89 3 3 chr11 145871603 145871885 -2911587 + AluSg SINE Alu 16 297 -13 1446 116 15 143 chr11 145872277 145872606 -2910866 - AluJo SINE Alu -14 288 2 21 36 0 0 chr11 145873258 145873286 -2910186 + GC_rich Low_complexity Low_complexity 1 28 0 25 75 0 0 chr11 145873473 145873526 -2909946 + GC_rich Low_complexity Low_complexity 1 53 0 291 114 0 0 chr11 145876075 145876119 -2907353 + (T)n Simple_repeat Simple_repeat 1 44 0 1960 95 0 0 chr11 145878115 145878356 -2905116 - AluSg SINE Alu -66 244 4 198 0 0 0 chr11 145878660 145878682 -2904790 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 209 191 43 0 chr11 145879065 145879112 -2904360 + GA-rich Low_complexity Low_complexity 2 50 0 2313 116 0 0 chr11 145879453 145879763 -2903709 - AluSx SINE Alu -2 310 1 2080 122 40 0 chr11 145881148 145881444 -2902028 - AluSg SINE Alu -2 308 1 218 327 170 0 chr11 145882086 145882239 -2901233 - MIR SINE MIR 0 262 84 1379 287 59 18 chr11 145882271 145882881 -2900591 + L1ME2 LINE L1 5318 5952 -212 292 251 2 34 chr11 145882983 145883108 -2900364 + L1MC5 LINE L1 7844 8038 -4 225 0 0 0 chr11 145883583 145883608 -2899864 + (TG)n Simple_repeat Simple_repeat 2 26 0 242 360 0 11 chr11 145884161 145884250 -2899222 - MER5B DNA MER1_type -88 90 3 723 220 69 12 chr11 145884348 145884521 -2898951 + MIR SINE MIR 32 214 -48 659 249 50 6 chr11 145884525 145884706 -2898766 + MIR SINE MIR 74 262 0 1332 240 23 3 chr11 145886664 145886972 -2896500 + MER58B DNA MER1_type 27 340 -1 245 326 101 0 chr11 145887122 145887211 -2896261 - MIR3 SINE MIR -15 193 96 497 263 30 40 chr11 145887337 145887535 -2895937 - MER117 DNA MER1_type 0 197 2 537 300 17 22 chr11 145887572 145887752 -2895720 + MIR3 SINE MIR 22 200 -8 1517 155 47 44 chr11 145889212 145889509 -2893963 + AluJo SINE Alu 1 298 -14 2283 93 0 0 chr11 145889510 145889811 -2893661 + AluSg1 SINE Alu 1 301 -8 207 225 42 56 chr11 145890311 145890382 -2893090 - L2 LINE L2 -248 3065 2996 509 318 87 32 chr11 145890557 145890746 -2892726 - L2 LINE L2 -575 2739 2562 1723 43 0 5 chr11 145890746 145890955 -2892517 - L1PA7 LINE L1 0 6154 5947 509 318 87 32 chr11 145890955 145891177 -2892295 - L2 LINE L2 -752 2562 2305 554 236 18 0 chr11 145892799 145892909 -2890563 - MER58A DNA MER1_type 0 224 113 1959 127 7 3 chr11 145892910 145893217 -2890255 - AluSx SINE Alu -4 308 1 323 157 0 0 chr11 145893217 145893268 -2890204 - MER58A DNA MER1_type -30 77 27 366 300 62 5 chr11 145893276 145893428 -2890044 + MIR SINE MIR 93 254 -8 27 29 0 0 chr11 145893562 145893596 -2889876 + AT_rich Low_complexity Low_complexity 1 34 0 1003 52 8 15 chr11 145894648 145894782 -2888690 - L1PA7 LINE L1 -6 6148 6016 516 295 29 0 chr11 145894918 145895091 -2888381 - MER5A DNA MER1_type 0 189 12 195 306 12 24 chr11 145895566 145895651 -2887821 - L2 LINE L2 -158 3114 3031 548 307 53 22 chr11 145895701 145895929 -2887543 - MIR SINE MIR -25 237 3 291 165 110 44 chr11 145895969 145896060 -2887412 - L1ME4a LINE L1 -2 6119 6023 504 289 73 32 chr11 145896145 145896488 -2886984 - L1ME4a LINE L1 -238 5883 5527 183 42 0 0 chr11 145897744 145897768 -2885704 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 805 109 86 0 chr11 145897781 145897909 -2885563 - MER85 DNA T2_type 0 139 1 25 0 0 0 chr11 145897955 145897980 -2885492 + AT_rich Low_complexity Low_complexity 1 25 0 330 258 245 12 chr11 145898278 145898350 -2885122 - L1MC4a LINE L1 -1631 6177 6123 2207 81 3 0 chr11 145898350 145898671 -2884801 + AluSp SINE Alu 1 322 0 330 258 245 12 chr11 145898671 145898760 -2884712 - L1MC4a LINE L1 -1685 6123 5977 1370 100 9 14 chr11 145899693 145899913 -2883559 - L1PA13 LINE L1 -7 6156 5938 2243 102 57 6 chr11 145900214 145900568 -2882904 - L1MA8 LINE L1 -3 6288 5917 2457 71 0 12 chr11 145900568 145900891 -2882581 + L1PA12 LINE L1 5740 6058 -110 1671 137 29 11 chr11 145900991 145901268 -2882204 - L1MA8 LINE L1 -423 5868 5587 191 299 51 66 chr11 145901836 145901973 -2881499 - MIR SINE MIR -111 151 17 2295 75 7 0 chr11 145902231 145902523 -2880949 - AluSx SINE Alu -18 294 1 200 273 0 18 chr11 145903893 145903948 -2879524 - L2 LINE L2 -3 3310 3257 746 211 13 7 chr11 145905284 145905436 -2878036 + AluJb SINE Alu 142 294 -18 501 330 11 22 chr11 145905463 145905642 -2877830 - MIR SINE MIR -14 248 72 7205 153 46 34 chr11 145907576 145908560 -2874912 - L1 LINE L1 -1423 4723 3713 2767 7 0 0 chr11 145908560 145908866 -2874606 - AluYa5 SINE Alu -5 306 1 7205 153 46 34 chr11 145908866 145909383 -2874089 - L1 LINE L1 -2433 3713 3204 6051 139 32 6 chr11 145909378 145910960 -2872512 + L1MA4A LINE L1 4681 6298 -5 * 350 245 90 45 chr11 145911144 145911299 -2872173 - L1MC5 LINE L1 -425 7536 7375 2266 105 3 0 chr11 145912087 145912392 -2871080 - AluSx SINE Alu -6 306 1 369 308 41 0 chr11 145913550 145913696 -2869776 + MER103 DNA DNA 2 153 -13 565 167 105 18 chr11 145913712 145913826 -2869646 - FLAM_A SINE Alu -9 124 1 715 289 24 19 chr11 145914146 145914357 -2869115 - MIR SINE MIR -19 243 32 861 122 7 41 chr11 145914747 145914894 -2868578 + FLAM_C SINE Alu 1 142 -1 374 222 11 56 chr11 145914895 145914985 -2868487 - MIR SINE MIR -91 171 86 241 387 60 4 chr11 145915133 145915368 -2868104 - L2 LINE L2 -637 2677 2430 245 353 33 8 chr11 145915822 145915944 -2867528 - MIR3 SINE MIR -2 206 82 401 211 11 11 chr11 145916392 145916482 -2866990 - MIR SINE MIR -110 152 63 460 244 0 0 chr11 145916661 145916751 -2866721 - MIR3 SINE MIR -34 174 85 585 275 89 34 chr11 145918442 145918678 -2864794 + MIR SINE MIR 3 251 -11 785 185 119 0 chr11 145918905 145919056 -2864416 - FAM SINE Alu -6 169 1 1266 226 85 15 chr11 145919263 145919604 -2863868 - MLT1A1 LTR MaLR 0 365 1 561 265 8 0 chr11 145919834 145919966 -2863506 - MIR SINE MIR -10 252 120 348 362 58 5 chr11 145919975 145920026 -2863446 - MIR SINE MIR -1 261 214 2341 63 3 7 chr11 145920026 145920326 -2863146 - AluY SINE Alu -12 299 1 348 362 58 5 chr11 145920326 145920462 -2863010 - MIR SINE MIR -48 214 64 415 120 0 54 chr11 145922687 145922779 -2860693 + (AGGGGG)n Simple_repeat Simple_repeat 5 91 0 224 348 37 22 chr11 145923027 145923162 -2860310 + L2 LINE L2 3171 3307 -6 2866 139 36 9 chr11 145923167 145923614 -2859858 + MER66B LTR ERV1 28 486 0 2398 71 0 0 chr11 145923678 145923986 -2859486 - AluY SINE Alu -3 308 1 525 232 9 9 chr11 145924128 145924240 -2859232 - MER5B DNA MER1_type -3 175 64 2469 66 0 0 chr11 145924582 145924887 -2858585 - AluY SINE Alu -6 305 1 1020 220 50 67 chr11 145925408 145925827 -2857645 + HAL1 LINE L1 780 1191 -1316 269 256 146 85 chr11 145925852 145926016 -2857456 - MIR SINE MIR -36 226 53 301 210 42 76 chr11 145926182 145926301 -2857171 + HAL1 LINE L1 1361 1475 -1032 444 255 133 62 chr11 145927110 145927463 -2856009 - L2 LINE L2 -72 3241 2864 233 292 55 151 chr11 145927815 145927939 -2855533 + L2 LINE L2 2886 3020 -252 644 119 127 0 chr11 145927939 145928057 -2855415 - FLAM_C SINE Alu 0 133 1 233 292 55 151 chr11 145928057 145928350 -2855122 + L2 LINE L2 3020 3263 -9 235 385 100 0 chr11 145928477 145928607 -2854865 + L3 LINE CR1 1056 1198 -379 209 296 122 20 chr11 145928610 145928708 -2854764 + L2 LINE L2 3158 3265 -7 252 260 45 84 chr11 145928757 145928911 -2854561 + L3 LINE CR1 1429 1576 -1 183 42 0 0 chr11 145929157 145929181 -2854291 + (CAT)n Simple_repeat Simple_repeat 3 26 0 262 277 84 34 chr11 145929404 145929523 -2853949 + L2 LINE L2 3086 3210 -62 379 308 35 66 chr11 145929540 145929738 -2853734 + MIR SINE MIR 1 192 -70 268 302 141 61 chr11 145929843 145930220 -2853252 - L2 LINE L2 0 3313 2907 1229 154 0 24 chr11 145932037 145932245 -2851227 + AluJo SINE Alu 87 289 -23 259 271 23 93 chr11 145933084 145933213 -2850259 + L2 LINE L2 3192 3311 -2 264 275 53 61 chr11 145933367 145933498 -2849974 - MIR SINE MIR -51 211 82 330 314 65 24 chr11 145933585 145933754 -2849718 - MIR SINE MIR -56 206 31 2093 125 0 0 chr11 145934007 145934303 -2849169 - AluSx SINE Alu -16 296 1 26 30 0 0 chr11 145934519 145934552 -2848920 + AT_rich Low_complexity Low_complexity 1 33 0 339 269 0 0 chr11 145934905 145934972 -2848500 - MER5A DNA MER1_type -120 69 3 276 298 138 14 chr11 145934977 145935172 -2848300 + L2 LINE L2 1925 2149 -1165 475 304 125 5 chr11 145935176 145935360 -2848112 + L2 LINE L2 2569 2774 -540 374 318 55 115 chr11 145935397 145935815 -2847657 + L2 LINE L2 2865 3257 -15 600 225 0 62 chr11 145935933 145935963 -2847509 + FLAM_A SINE Alu 1 31 -280 3035 151 8 45 chr11 145935963 145936468 -2847004 + MER66B LTR ERV1 1 486 0 600 225 0 62 chr11 145936468 145936566 -2846906 + FLAM_A SINE Alu 31 121 -190 237 83 0 0 chr11 145936566 145936602 -2846870 + (GA)n Simple_repeat Simple_repeat 1 36 0 222 347 90 80 chr11 145938098 145938386 -2845086 + L2 LINE L2 2977 3267 -5 1868 153 20 3 chr11 145938672 145938966 -2844506 - AluJo SINE Alu -13 299 1 241 247 91 0 chr11 145940116 145940193 -2843279 - MIR SINE MIR -156 106 23 27 0 0 0 chr11 145940809 145940836 -2842636 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr11 145940852 145940874 -2842598 + AT_rich Low_complexity Low_complexity 1 22 0 42 20 0 0 chr11 145941284 145941333 -2842139 + AT_rich Low_complexity Low_complexity 1 49 0 634 224 160 13 chr11 145941624 145941861 -2841611 + L1ME3A LINE L1 5678 5949 -221 816 191 15 0 chr11 145942021 145942152 -2841320 - FLAM_C SINE Alu -10 133 1 25 0 0 0 chr11 145942251 145942276 -2841196 + AT_rich Low_complexity Low_complexity 1 25 0 34 0 0 0 chr11 145942540 145942574 -2840898 + AT_rich Low_complexity Low_complexity 1 34 0 1316 214 135 0 chr11 145942715 145942981 -2840491 - AluJo SINE Alu 0 302 1 484 202 17 42 chr11 145942986 145943059 -2840413 + MIR SINE MIR 120 190 -72 1867 159 7 3 chr11 145943059 145943367 -2840105 + AluSx SINE Alu 1 309 -3 484 202 17 42 chr11 145943367 145943412 -2840060 + MIR SINE MIR 190 235 -27 605 307 40 13 chr11 145944273 145944498 -2838974 - MIR SINE MIR -27 235 5 2365 47 7 17 chr11 145944914 145945210 -2838262 + AluY SINE Alu 1 293 -18 29 90 0 0 chr11 145946138 145946216 -2837256 + AT_rich Low_complexity Low_complexity 1 78 0 2428 84 0 0 chr11 145948025 145948333 -2835139 - AluY SINE Alu -3 308 1 3566 168 20 0 chr11 145950000 145950589 -2832883 + MER6A DNA MER2_type 1 601 -4 2091 114 0 17 chr11 145950920 145951218 -2832254 - AluSx SINE Alu -19 293 1 263 255 64 21 chr11 145952027 145952121 -2831351 - MIR3 SINE MIR -1 207 110 630 222 8 0 chr11 145953193 145953310 -2830162 - FLAM_C SINE Alu -24 119 2 1862 176 0 3 chr11 145953425 145953731 -2829741 - AluJo SINE Alu -7 305 1 2090 143 3 0 chr11 145953828 145954135 -2829337 - AluSq SINE Alu -5 308 1 2271 104 0 0 chr11 145954250 145954547 -2828925 - AluSg SINE Alu -13 297 1 2078 122 35 0 chr11 145954993 145955280 -2828192 - AluSg SINE Alu -13 297 1 308 314 109 0 chr11 145956156 145956293 -2827179 - MIR SINE MIR -78 184 33 2301 105 0 13 chr11 145957503 145957809 -2825663 - AluSx SINE Alu -10 302 1 346 319 60 0 chr11 145958299 145958415 -2825057 - MIR SINE MIR -48 214 92 1914 153 24 0 chr11 145960382 145960670 -2822802 + AluJo SINE Alu 1 295 -17 315 292 60 18 chr11 145960702 145960870 -2822602 + L1M4 LINE L1 4674 4848 -1298 3076 213 51 47 chr11 145961669 145961988 -2821484 - L1ME1 LINE L1 -17 6149 5833 1794 143 4 0 chr11 145961988 145962260 -2821212 - AluSx SINE Alu -6 306 34 3076 213 51 47 chr11 145962260 145963196 -2820276 - L1ME1 LINE L1 -333 5833 4891 26 30 0 0 chr11 145963196 145963229 -2820243 + AT_rich Low_complexity Low_complexity 1 33 0 1866 116 4 0 chr11 145963244 145963494 -2819978 - AluSx SINE Alu -61 251 1 23 0 0 0 chr11 145963896 145963919 -2819553 + AT_rich Low_complexity Low_complexity 1 23 0 1701 267 128 25 chr11 145963988 145965125 -2818347 + L2 LINE L2 2041 3310 -3 549 176 0 20 chr11 145965417 145965507 -2817965 + AluSg/x SINE Alu 199 288 -22 7080 54 2 0 chr11 145965507 145966342 -2817130 + L1PA7 LINE L1 5317 6153 -1 549 176 0 20 chr11 145966342 145966353 -2817119 + AluSg/x SINE Alu 288 298 -12 271 301 14 0 chr11 145966526 145966599 -2816873 - L2 LINE L2 -63 3209 3136 288 299 10 41 chr11 145967316 145967413 -2816059 - MIR3 SINE MIR -17 191 98 402 239 0 0 chr11 145968170 145968262 -2815210 - MIR3 SINE MIR -1 207 116 893 90 0 25 chr11 145968421 145968543 -2814929 - AluSg/x SINE Alu -117 195 77 1108 296 121 46 chr11 145968696 145969955 -2813517 - L1M4 LINE L1 -1088 5058 3896 2041 122 7 7 chr11 145969955 145970251 -2813221 - AluSx SINE Alu -16 296 1 1108 296 121 46 chr11 145970251 145971135 -2812337 - L1M4 LINE L1 -2250 3896 2643 2368 114 19 114 chr11 145971287 145971718 -2811754 + MLT1B LTR MaLR 1 390 0 214 156 31 0 chr11 145971969 145972033 -2811439 + (TA)n Simple_repeat Simple_repeat 2 67 0 736 131 25 8 chr11 146022601 146022723 -2760749 + L1MC1 LINE L1 6201 6324 -9 976 214 92 7 chr11 146022761 146023032 -2760440 + MLT1C LTR MaLR 174 467 0 417 255 118 13 chr11 146023065 146023218 -2760254 + LTR16A LTR ERVL 233 401 -49 338 350 34 0 chr11 146023287 146023404 -2760068 + L2 LINE L2 3192 3312 -1 672 124 0 0 chr11 146023498 146023603 -2759869 + (GGAA)n Simple_repeat Simple_repeat 2 106 0 4571 91 18 0 chr11 146023707 146024310 -2759162 + L1PA10 LINE L1 5555 6168 0 5280 137 17 2 chr11 146024310 146025617 -2757855 + L1P4 LINE L1 4411 5736 -427 1937 196 22 55 chr11 146025729 146026276 -2757196 - L1MDa LINE L1 -4816 1724 1196 250 130 0 0 chr11 146026296 146026342 -2757130 - L1PA2 LINE L1 -2 6153 6108 25 0 0 0 chr11 146026570 146026595 -2756877 + AT_rich Low_complexity Low_complexity 1 25 0 2751 234 82 45 chr11 146026687 146027416 -2756056 - L1MDa LINE L1 -5334 1206 352 282 29 0 0 chr11 146027416 146027451 -2756021 + (TG)n Simple_repeat Simple_repeat 2 36 0 2751 234 82 45 chr11 146027451 146027817 -2755655 - L1MDa LINE L1 -6188 352 1 2985 123 22 34 chr11 146027820 146028324 -2755148 - L1MA7 LINE L1 0 6291 5794 815 196 78 102 chr11 146029623 146029721 -2753751 + MIR SINE MIR 13 112 -150 2136 90 0 14 chr11 146029721 146030000 -2753472 - AluSg SINE Alu -14 296 22 1798 70 9 22 chr11 146030000 146030229 -2753243 - AluSq SINE Alu -66 247 21 1762 74 9 26 chr11 146030229 146030457 -2753015 - AluSq SINE Alu -66 247 22 1946 68 8 28 chr11 146030457 146030708 -2752764 - AluSq SINE Alu -66 247 1 815 196 78 102 chr11 146030708 146030861 -2752611 + MIR SINE MIR 108 261 -1 461 261 46 26 chr11 146031020 146031173 -2752299 + MER5B DNA MER1_type 21 176 -2 443 238 131 54 chr11 146031191 146031359 -2752113 + MER5A DNA MER1_type 9 189 0 204 277 0 21 chr11 146031359 146031394 -2752078 + MIR3 SINE MIR 154 187 -21 1814 151 23 40 chr11 146032286 146032636 -2750836 - L1MB3 LINE L1 -20 6163 5820 420 55 0 0 chr11 146032900 146032955 -2750517 + (TG)n Simple_repeat Simple_repeat 2 56 0 366 281 156 16 chr11 146033257 146033385 -2750087 - MIR3 SINE MIR -28 180 35 277 204 0 0 chr11 146035484 146035528 -2747944 - L2 LINE L2 -8 3264 3221 1073 312 70 18 chr11 146035758 146036316 -2747156 + HAL1b LINE L1 53 639 -709 2147 219 104 33 chr11 146036605 146037387 -2746085 + L1MC5 LINE L1 6547 7395 -566 308 167 167 111 chr11 146037397 146037613 -2745859 + L1MC5 LINE L1 7450 7677 -284 912 240 10 5 chr11 146037640 146037840 -2745632 + L1MC5 LINE L1 6625 6825 -1136 436 299 37 12 chr11 146037838 146038002 -2745470 + L1MC5 LINE L1 7739 7906 -55 * 425 288 28 53 chr11 146038408 146038593 -2744879 - MIR SINE MIR -50 212 30 2601 50 0 0 chr11 146040135 146040434 -2743038 + AluY SINE Alu 3 301 -10 4260 183 13 1 chr11 146040436 146041148 -2742324 - MER44D DNA MER2_type 0 605 14 22 0 0 0 chr11 146041181 146041203 -2742269 + AT_rich Low_complexity Low_complexity 1 22 0 450 276 53 0 chr11 146041720 146041872 -2741600 - MIR3 SINE MIR -4 204 45 466 268 45 67 chr11 146041929 146042064 -2741408 - MIR SINE MIR -42 220 90 1925 164 70 3 chr11 146042064 146042406 -2741066 - MLT1A1 LTR MaLR 0 365 1 466 268 45 67 chr11 146042406 146042494 -2740978 - MIR SINE MIR -172 90 2 273 312 126 22 chr11 146044308 146044539 -2738933 + L2 LINE L2 2578 2832 -482 199 197 45 45 chr11 146045702 146045768 -2737704 + L3 LINE CR1 1508 1573 -4 218 309 41 49 chr11 146045952 146046075 -2737397 - MIR SINE MIR -128 134 13 * 328 239 0 0 chr11 146046062 146046133 -2737339 - MIR3 SINE MIR -51 157 87 377 295 0 9 chr11 146046775 146046880 -2736592 - MIR SINE MIR -80 128 25 420 321 0 0 chr11 146047324 146047436 -2736036 - L2 LINE L2 -1 3271 3160 1171 260 72 120 chr11 146047513 146048868 -2734604 + L1MEd LINE L1 67 1387 -4877 481 219 186 11 chr11 146049580 146049763 -2733709 - MIR SINE MIR 0 262 48 182 225 183 50 chr11 146051174 146051294 -2732178 - L2 LINE L2 -2414 900 765 505 269 87 29 chr11 146051648 146051923 -2731549 + L2 LINE L2 2398 2688 -626 2774 65 8 3 chr11 146051926 146052279 -2731193 - THE1A LTR MaLR 0 355 1 11985 95 1 2 chr11 146052279 146053861 -2729611 - THE1A-int LTR MaLR 0 1580 1 2283 95 92 3 chr11 146053861 146054187 -2729285 - THE1A LTR MaLR 0 355 1 2159 132 0 7 chr11 146054301 146054596 -2728876 + AluSx SINE Alu 5 297 -15 211 285 135 31 chr11 146054605 146054798 -2728674 + L2 LINE L2 2763 2975 -339 238 238 95 38 chr11 146054858 146054963 -2728509 + L2 LINE L2 3118 3228 -85 449 301 55 0 chr11 146055039 146055185 -2728287 + LTR16A LTR ERVL 26 179 -271 415 289 42 58 chr11 146055208 146055313 -2728159 + MLT1D LTR MaLR 5 107 -398 2650 127 20 5 chr11 146055313 146055716 -2727756 - L1PA15 LINE L1 0 6165 5757 415 289 42 58 chr11 146055716 146055800 -2727672 + MLT1D LTR MaLR 107 191 -314 715 167 29 7 chr11 146055812 146055950 -2727522 + L1MC1 LINE L1 6069 6209 -124 369 93 0 0 chr11 146056058 146056112 -2727360 + (GGGA)n Simple_repeat Simple_repeat 4 57 0 501 256 26 26 chr11 146056470 146056626 -2726846 - MIR3 SINE MIR -11 197 42 277 329 146 12 chr11 146056771 146056935 -2726537 - MIR SINE MIR -62 200 15 437 169 99 99 chr11 146057986 146058105 -2725367 - MER5B DNA MER1_type 0 178 56 2173 109 0 3 chr11 146058105 146058409 -2725063 - AluSx SINE Alu 0 303 1 437 169 99 99 chr11 146058409 146058460 -2725012 - MER5B DNA MER1_type -121 57 7 454 253 25 74 chr11 146058858 146059020 -2724452 - MIR SINE MIR -36 226 73 2441 162 28 26 chr11 146059063 146059256 -2724216 + MSTB LTR MaLR 1 192 -234 2510 91 0 0 chr11 146059256 146059563 -2723909 + AluSc SINE Alu 1 307 -2 2441 162 28 26 chr11 146059563 146059794 -2723678 + MSTB LTR MaLR 192 426 0 3359 200 23 0 chr11 146059794 146060448 -2723024 + MSTB-int LTR MaLR 1 669 -982 633 143 214 3 chr11 146060469 146060596 -2722876 + LTR28 LTR ERV1 1 672 -606 12282 119 13 17 chr11 146060596 146062893 -2720579 + LTR27-int LTR ERV1 2213 5217 0 2184 188 59 19 chr11 146062893 146063395 -2720077 + LTR27 LTR ERV1 3 501 0 4471 194 72 8 chr11 146063395 146064287 -2719185 + MSTB-int LTR MaLR 703 1651 0 2534 178 14 2 chr11 146064287 146064708 -2718764 + MSTB LTR MaLR 1 426 0 1005 200 107 39 chr11 146065313 146065386 -2718086 + MSTD LTR MaLR 2 69 -327 2555 159 12 86 chr11 146065386 146065958 -2717514 - LTR26B LTR ERV1 0 531 2 1005 200 107 39 chr11 146065958 146066221 -2717251 + MSTD LTR MaLR 69 396 0 3614 223 53 55 chr11 146066223 146067237 -2716235 + MSTD-int LTR MaLR 2 1013 -722 236 250 0 0 chr11 146067662 146067714 -2715758 + (CA)n Simple_repeat Simple_repeat 1 52 0 2208 115 3 0 chr11 146068025 146068321 -2715151 + AluSp SINE Alu 1 297 -16 333 278 120 21 chr11 146068371 146068562 -2714910 + LTR40a LTR ERVL 224 433 -86 182 326 0 0 chr11 146068729 146068778 -2714694 - MIR SINE MIR -104 104 56 231 359 65 0 chr11 146069624 146069716 -2713756 - L2 LINE L2 -50 3222 3125 1810 55 0 18 chr11 146069784 146070003 -2713469 + AluY SINE Alu 89 303 -8 180 256 116 12 chr11 146070822 146070908 -2712564 - MIR SINE MIR -84 178 84 1226 199 186 13 chr11 146070913 146071224 -2712248 + MLT1A1 LTR MaLR 1 365 0 520 297 3 0 chr11 146071237 146071534 -2711938 + G-rich Low_complexity Low_complexity 1 298 0 545 285 0 0 chr11 146071571 146071750 -2711722 + G-rich Low_complexity Low_complexity 1 179 0 486 298 0 0 chr11 146071764 146071942 -2711530 + G-rich Low_complexity Low_complexity 2 179 0 467 307 0 0 chr11 146071979 146072158 -2711314 + G-rich Low_complexity Low_complexity 1 179 0 521 68 14 0 chr11 146072467 146072541 -2710931 + (TG)n Simple_repeat Simple_repeat 1 75 0 366 245 63 49 chr11 146072551 146072628 -2710844 - MER103 DNA DNA -16 150 69 2368 94 0 0 chr11 146072628 146072925 -2710547 + AluSc SINE Alu 12 308 -1 366 245 63 49 chr11 146072925 146072990 -2710482 - MER103 DNA DNA -97 69 6 3277 188 91 39 chr11 146073561 146074004 -2709468 - L1MB8 LINE L1 -1 6177 5676 2243 118 3 0 chr11 146074004 146074301 -2709171 - AluSx SINE Alu -14 298 1 3277 188 91 39 chr11 146074301 146074624 -2708848 - L1MB8 LINE L1 -502 5676 5371 588 302 122 19 chr11 146075541 146075862 -2707610 + L3 LINE CR1 1213 1566 -11 2144 234 31 2 chr11 146076062 146076506 -2706966 + MSTD-int LTR MaLR 1279 1735 0 1094 184 104 23 chr11 146076506 146076828 -2706644 + MSTD LTR MaLR 1 383 0 394 247 94 69 chr11 146077190 146077714 -2705758 + L1MEc LINE L1 789 1303 -4902 885 352 62 34 chr11 146077741 146078309 -2705163 + L1PA16 LINE L1 788 1371 -6203 275 280 161 28 chr11 146078337 146078480 -2704992 + L1PA16 LINE L1 2145 2306 -5268 14647 214 31 13 chr11 146079141 146079255 -2704217 + L1PA16 LINE L1 2189 2299 -5305 267 31 0 0 chr11 146079255 146079287 -2704185 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 14647 214 31 13 chr11 146079287 146084000 -2699472 + L1PA16 LINE L1 2299 7088 -516 378 75 8 0 chr11 146084000 146084057 -2699415 - MLT2A1 LTR ERVL 0 444 397 237 192 0 109 chr11 146084131 146084324 -2699148 + (CTATT)n Simple_repeat Simple_repeat 2 173 0 237 192 0 109 chr11 146084335 146084528 -2698944 + (CTATT)n Simple_repeat Simple_repeat 2 173 0 237 192 0 109 chr11 146084539 146084732 -2698740 + (CTATT)n Simple_repeat Simple_repeat 2 173 0 237 192 0 109 chr11 146084743 146084936 -2698536 + (CTATT)n Simple_repeat Simple_repeat 2 173 0 380 84 0 141 chr11 146084981 146085390 -2698082 + (CTATT)n Simple_repeat Simple_repeat 1 351 0 3137 73 13 0 chr11 146085409 146085806 -2697666 - MLT2A1 LTR ERVL -42 402 1 3007 147 36 0 chr11 146085806 146086308 -2697164 + L1PA16 LINE L1 7084 7603 -1 506 245 117 95 chr11 146086309 146087298 -2696174 + L1ME3A LINE L1 1383 2351 -3864 * 1989 239 84 3 chr11 146087285 146088010 -2695462 + L1ME3A LINE L1 2600 3383 -2832 1347 168 71 11 chr11 146088059 146088339 -2695133 + AluJb SINE Alu 1 297 -15 956 177 26 30 chr11 146088422 146088654 -2694818 - MER106A DNA MER1_type 0 236 6 2726 219 54 70 chr11 146088657 146089682 -2693790 + L1ME3A LINE L1 5210 6234 -5 339 202 240 10 chr11 146089791 146089895 -2693577 + MIR SINE MIR 16 143 -65 307 265 128 20 chr11 146090042 146090144 -2693328 - L1ME3A LINE L1 -121 6049 5937 2134 222 92 4 chr11 146090531 146090717 -2692755 + L1MC4 LINE L1 6459 6627 -1415 234 0 0 0 chr11 146090717 146090743 -2692729 + (TG)n Simple_repeat Simple_repeat 2 27 0 2134 222 92 4 chr11 146090743 146091069 -2692403 + L1MC4 LINE L1 6627 7016 -1026 2903 164 123 27 chr11 146091073 146091672 -2691800 + MER39 LTR ERV1 6 707 0 1966 240 60 27 chr11 146091752 146092421 -2691051 + L1MC4 LINE L1 7160 7858 -6 231 182 68 0 chr11 146092600 146092644 -2690828 - L2 LINE L2 -75 3238 3192 225 403 55 17 chr11 146092691 146092872 -2690600 + MIR SINE MIR 20 207 -55 3003 61 10 13 chr11 146093482 146093876 -2689596 - L1PA6 LINE L1 -1 6153 5761 460 325 57 0 chr11 146094919 146095113 -2688359 + MIR SINE MIR 14 218 -44 303 207 119 132 chr11 146095116 146095367 -2688105 - MER74C LTR ERVL -14 608 303 * 797 173 122 3 chr11 146095347 146095526 -2687946 - MER74C LTR ERVL -273 187 6 1861 197 57 39 chr11 146095697 146095945 -2687527 - MLT1D LTR MaLR 0 505 263 2435 75 0 0 chr11 146095945 146096253 -2687219 - AluSc SINE Alu -1 308 1 1861 197 57 39 chr11 146096253 146096497 -2686975 - MLT1D LTR MaLR -242 263 4 198 213 43 0 chr11 146096943 146096990 -2686482 + L2 LINE L2 3133 3181 -91 263 269 0 30 chr11 146097405 146097472 -2686000 - MIR SINE MIR -6 256 192 190 224 20 61 chr11 146097636 146097685 -2685787 - L2 LINE L2 -80 3233 3187 438 196 88 0 chr11 146098061 146098163 -2685309 - MIR3 SINE MIR -7 201 91 545 293 73 39 chr11 146098195 146098427 -2685045 - MIR SINE MIR -3 259 20 670 261 92 5 chr11 146098439 146098646 -2684826 + MIR SINE MIR 28 252 -10 222 387 11 0 chr11 146099524 146099617 -2683855 - MIR SINE MIR -8 254 161 226 312 46 18 chr11 146099630 146099739 -2683733 + MIR SINE MIR 33 144 -64 280 237 13 13 chr11 146100039 146100115 -2683357 + MIR3 SINE MIR 111 186 -22 449 305 42 0 chr11 146100940 146101058 -2682414 + MIR SINE MIR 26 148 -114 272 27 27 0 chr11 146101187 146101224 -2682248 + (CAT)n Simple_repeat Simple_repeat 3 40 0 310 241 12 36 chr11 146101285 146101368 -2682104 + MER103 DNA DNA 3 83 -83 318 233 113 90 chr11 146103365 146103498 -2679974 + MIR SINE MIR 20 155 -107 483 241 103 14 chr11 146104166 146104311 -2679161 - MIR SINE MIR -71 191 34 260 213 0 21 chr11 146104446 146104482 -2678990 + AluJ/monomer SINE Alu 1 37 -264 2032 122 0 13 chr11 146104482 146104786 -2678686 + AluSx SINE Alu 1 300 -12 287 274 0 16 chr11 146104942 146105004 -2678468 + MIR SINE MIR 6 66 -196 313 301 18 16 chr11 146105031 146105257 -2678215 + L1ME3 LINE L1 4936 5164 -982 14189 162 27 20 chr11 146105269 146108966 -2674506 + L1PA8 LINE L1 3 3785 -2676 414 147 0 0 chr11 146108957 146109025 -2674447 + L1PA8 LINE L1 4263 4330 -2131 * 6657 78 25 0 chr11 146109025 146110497 -2672975 + L1PA8 LINE L1 5001 6487 0 1022 282 89 37 chr11 146110512 146111244 -2672228 + L1ME3 LINE L1 5187 5951 -211 1482 126 82 11 chr11 146111729 146111999 -2671473 - L1MB8 LINE L1 0 6178 5890 373 302 43 9 chr11 146112228 146112344 -2671128 - MIR SINE MIR -142 120 1 180 231 77 0 chr11 146113920 146113959 -2669513 + L2 LINE L2 3189 3230 -83 495 299 71 27 chr11 146114193 146114377 -2669095 - MIR SINE MIR -43 219 28 691 236 207 5 chr11 146115271 146115479 -2667993 + L2 LINE L2 1745 1994 -1320 459 240 20 10 chr11 146115484 146115584 -2667888 + L2 LINE L2 3209 3309 -4 302 294 113 31 chr11 146115590 146115750 -2667722 - L2 LINE L2 -229 3043 2871 366 333 48 37 chr11 146116796 146116985 -2666487 - MIR3 SINE MIR -1 207 17 331 222 32 0 chr11 146118267 146118330 -2665142 + MIR SINE MIR 90 154 -108 1519 131 97 21 chr11 146118444 146118734 -2664738 - AluSx SINE Alu 0 312 1 330 61 0 0 chr11 146120221 146120270 -2663202 - L1PA6 LINE L1 -1 6153 6105 1680 158 0 7 chr11 146120547 146120826 -2662646 + AluJb SINE Alu 1 277 -35 203 307 13 27 chr11 146120917 146120992 -2662480 - MIR SINE MIR 0 262 189 343 314 57 14 chr11 146121400 146121540 -2661932 + MIR SINE MIR 47 192 -70 288 320 8 24 chr11 146122320 146122445 -2661027 - MIR SINE MIR -50 212 90 445 259 228 37 chr11 146122633 146122822 -2660650 + MIR SINE MIR 38 262 0 257 328 78 17 chr11 146123858 146124038 -2659434 - L2 LINE L2 -220 3052 2862 260 293 73 0 chr11 146124172 146124254 -2659218 + MIR SINE MIR 109 196 -66 222 347 0 0 chr11 146125577 146125652 -2657820 + (CGTG)n Simple_repeat Simple_repeat 1 75 0 490 238 49 8 chr11 146125722 146125844 -2657628 + L2 LINE L2 3186 3312 -1 267 297 156 16 chr11 146126202 146126330 -2657142 + MIR SINE MIR 111 256 -6 250 276 0 0 chr11 146127462 146127538 -2655934 + CT-rich Low_complexity Low_complexity 1 76 0 224 187 40 93 chr11 146127718 146127793 -2655679 - MIR SINE MIR -96 166 96 1054 196 0 0 chr11 146128235 146128424 -2655048 + MER5A DNA MER1_type 1 189 0 256 326 94 43 chr11 146128432 146128708 -2654764 + L2 LINE L2 2804 3093 -179 210 320 0 53 chr11 146128789 146128864 -2654608 + L2 LINE L2 3243 3313 0 1776 163 54 3 chr11 146128883 146129196 -2654276 + MER2 DNA MER2_type 1 329 -16 239 263 182 0 chr11 146129850 146129949 -2653523 - L2 LINE L2 -13 3300 3184 362 291 69 82 chr11 146130487 146130793 -2652679 + L2 LINE L2 1626 1927 -1387 242 280 40 0 chr11 146130797 146130872 -2652600 - L2 LINE L2 0 3272 3195 363 329 71 0 chr11 146130922 146131077 -2652395 + L2 LINE L2 1957 2122 -1192 212 301 153 52 chr11 146131108 146131337 -2652135 + L2 LINE L2 2231 2482 -832 5514 170 60 21 chr11 146131527 146132653 -2650819 + Charlie1a DNA MER1_type 1 1169 -286 648 231 35 15 chr11 146132679 146132882 -2650590 + Charlie1a DNA MER1_type 1249 1455 0 616 324 69 13 chr11 146133276 146134051 -2649421 - L1ME LINE L1 -420 5725 4905 235 246 62 88 chr11 146134110 146134415 -2649057 - L1ME LINE L1 -3174 2955 2659 15787 117 29 5 chr11 146134767 146137127 -2646345 - Tigger1 DNA MER2_type 0 2418 1 1558 329 76 25 chr11 146137127 146137379 -2646093 - ERVL LTR ERVL -1820 3834 3596 2080 113 0 7 chr11 146137379 146137680 -2645792 + AluSx SINE Alu 1 299 -13 1558 329 76 25 chr11 146137680 146138326 -2645146 - ERVL LTR ERVL -2058 3596 2890 1638 347 49 22 chr11 146138458 146139351 -2644121 - ERVL LTR ERVL -2986 2514 1594 2045 154 25 8 chr11 146139351 146139708 -2643764 - MLT1A1 LTR MaLR -2 363 1 1638 347 49 22 chr11 146139708 146140057 -2643415 - ERVL LTR ERVL -3906 1594 1256 291 281 211 0 chr11 146140099 146140213 -2643259 + MER5A DNA MER1_type 52 189 0 2293 72 10 23 chr11 146140741 146141048 -2642424 + AluY SINE Alu 1 303 -8 261 330 34 48 chr11 146141496 146141705 -2641767 - L1ME LINE L1 -5912 207 2 275 351 86 20 chr11 146141739 146141890 -2641582 - L2 LINE L2 0 3272 3112 2577 219 34 7 chr11 146142021 146142636 -2640836 - MER99 DNA DNA -3 825 194 25 0 0 0 chr11 146143003 146143028 -2640444 + AT_rich Low_complexity Low_complexity 1 25 0 371 204 108 0 chr11 146143349 146143442 -2640030 - MER99 DNA DNA -725 103 1 249 417 0 0 chr11 146143461 146143593 -2639879 - L2 LINE L2 -743 2571 2440 285 320 50 46 chr11 146144246 146144465 -2639007 + L2 LINE L2 2657 2876 -438 * 544 268 125 44 chr11 146144461 146144756 -2638716 + L2 LINE L2 2995 3313 0 210 176 66 11 chr11 146144888 146144979 -2638493 + (TA)n Simple_repeat Simple_repeat 1 96 0 28 0 0 0 chr11 146145127 146145155 -2638317 + AT_rich Low_complexity Low_complexity 1 28 0 227 254 0 0 chr11 146145160 146145215 -2638257 - LTR33A LTR ERVL 0 523 469 274 232 107 45 chr11 146147257 146147369 -2636103 + MIR3 SINE MIR 88 206 -2 339 214 95 12 chr11 146148434 146148518 -2634954 - MIR3 SINE MIR -24 184 94 429 20 0 0 chr11 146148930 146148980 -2634492 + (TG)n Simple_repeat Simple_repeat 2 51 0 2203 54 0 0 chr11 146149040 146149300 -2634172 + AluY SINE Alu 35 294 -17 216 326 87 11 chr11 146150427 146150519 -2632953 - L2 LINE L2 -48 3224 3126 360 0 0 0 chr11 146150597 146150637 -2632835 + (CA)n Simple_repeat Simple_repeat 2 41 0 4007 158 42 68 chr11 146151340 146152195 -2631277 + L1MEc LINE L1 34 866 -5560 401 155 0 0 chr11 146152195 146152253 -2631219 - AluJ/F(R)AM SINE Alu -119 193 136 * 670 149 0 19 chr11 146152250 146152357 -2631115 + AluJb SINE Alu 181 285 -27 3004 278 60 20 chr11 146152463 146154028 -2629444 + L1 LINE L1 2425 4052 -2094 5923 132 48 9 chr11 146154030 146155143 -2628329 + L1MC1 LINE L1 5178 6333 0 7225 45 16 1 chr11 146155154 146156583 -2626889 - L1PA5 LINE L1 0 6154 4713 2122 82 0 11 chr11 146156933 146157200 -2626272 + AluY SINE Alu 1 264 -47 247 273 35 42 chr11 146157400 146157543 -2625929 + L1MEc LINE L1 899 1040 -5376 2037 127 0 33 chr11 146157736 146158035 -2625437 + AluSx SINE Alu 1 289 -23 782 280 60 38 chr11 146158120 146158438 -2625034 + L1ME3A LINE L1 5560 5884 -278 449 262 18 143 chr11 146158865 146159144 -2624328 + L1MEc LINE L1 1268 1511 -4905 5669 189 68 4 chr11 146159187 146160282 -2623190 + L1PA13 LINE L1 1 1166 -5621 10249 217 77 8 chr11 146160287 146162748 -2620724 + L1PA13 LINE L1 2434 5064 -1733 6789 189 28 60 chr11 146162751 146164424 -2619048 + L1P4 LINE L1 10 1628 -4833 * 13896 132 15 10 chr11 146164402 146165283 -2618189 + L1P4 LINE L1 3207 4082 -2407 2410 34 41 0 chr11 146165283 146165576 -2617896 + AluY SINE Alu 1 305 -6 13896 132 15 10 chr11 146165576 146167253 -2616219 + L1P4 LINE L1 4082 5776 -713 2264 256 118 24 chr11 146167365 146167855 -2615617 - L1 LINE L1 -2456 3690 3248 3138 109 2 0 chr11 146167855 146168304 -2615168 - L1PA13 LINE L1 -13 6150 5701 2264 256 118 24 chr11 146168304 146168645 -2614827 - L1 LINE L1 -2898 3248 2941 2419 89 0 0 chr11 146168645 146168948 -2614524 + AluSx SINE Alu 2 304 -8 2264 256 118 24 chr11 146168948 146169506 -2613966 - L1 LINE L1 -3205 2941 2169 418 308 15 0 chr11 146169821 146169951 -2613521 + MIR3 SINE MIR 65 196 -12 1034 209 70 0 chr11 146170355 146170657 -2612815 + MER33 DNA MER1_type 2 324 0 228 35 0 0 chr11 146171060 146171089 -2612383 + (CA)n Simple_repeat Simple_repeat 2 30 0 1280 169 134 60 chr11 146171329 146171731 -2611741 + MSTB1 LTR MaLR 1 432 0 453 387 52 11 chr11 146172140 146172409 -2611063 + L2 LINE L2 2571 2850 -464 394 221 116 0 chr11 146172494 146172589 -2610883 - L2 LINE L2 -8 3305 3200 1138 231 27 34 chr11 146172997 146173266 -2610206 + L1MEc LINE L1 2287 2553 -4054 994 211 0 18 chr11 146173266 146173489 -2609983 - L1PA16 LINE L1 -9 6157 5939 1138 231 27 34 chr11 146173489 146173630 -2609842 + L1MEc LINE L1 2553 2694 -3913 427 153 18 42 chr11 146173630 146173921 -2609551 + (TTATA)n Simple_repeat Simple_repeat 1 283 0 244 123 53 35 chr11 146173924 146174094 -2609378 + (TATAA)n Simple_repeat Simple_repeat 2 174 0 23 54 0 0 chr11 146174094 146174131 -2609341 + AT_rich Low_complexity Low_complexity 1 37 0 417 97 98 3 chr11 146174131 146174449 -2609023 + (TA)n Simple_repeat Simple_repeat 1 348 0 545 78 72 6 chr11 146174477 146174644 -2608828 + (TA)n Simple_repeat Simple_repeat 1 178 0 2392 251 71 18 chr11 146174646 146175675 -2607797 + L1MEc LINE L1 2657 3740 -2686 887 135 15 0 chr11 146175696 146175829 -2607643 - FLAM_C SINE Alu 0 143 9 24 0 0 0 chr11 146175838 146175862 -2607610 + AT_rich Low_complexity Low_complexity 1 24 0 555 264 93 25 chr11 146175938 146176218 -2607254 + L1MEc LINE L1 3932 4230 -2196 1725 266 54 27 chr11 146176237 146176790 -2606682 - L2 LINE L2 -430 2884 2317 274 203 62 0 chr11 146176799 146176863 -2606609 + MER21B LTR ERV1 13 80 -783 1602 187 105 18 chr11 146176871 146177272 -2606200 + MER21B LTR ERV1 407 842 -21 364 253 322 0 chr11 146177293 146177467 -2606005 - L2 LINE L2 -983 2331 2102 5086 188 32 17 chr11 146177470 146177981 -2605491 + L1PA15 LINE L1 2097 2599 -3566 1679 201 0 0 chr11 146177981 146178259 -2605213 + AluJb SINE Alu 1 278 -34 1011 105 6 12 chr11 146178259 146178430 -2605042 + (GAAA)n Simple_repeat Simple_repeat 3 172 0 5086 188 32 17 chr11 146178430 146179348 -2604124 + L1PA15 LINE L1 2599 3502 -2663 2302 98 3 0 chr11 146179348 146179643 -2603829 + AluY SINE Alu 1 296 -15 5086 188 32 17 chr11 146179643 146180068 -2603404 + L1PA15 LINE L1 3502 3919 -2246 2201 136 3 0 chr11 146180068 146180376 -2603096 + AluSx SINE Alu 1 309 -3 5086 188 32 17 chr11 146180376 146182356 -2601116 + L1PA15 LINE L1 3919 6162 -3 356 224 217 35 chr11 146182391 146182534 -2600938 - MIR SINE MIR -21 241 73 533 284 91 33 chr11 146183213 146183608 -2599864 + HAL1b LINE L1 254 671 -677 186 43 0 0 chr11 146183652 146183675 -2599797 + (A)n Simple_repeat Simple_repeat 1 23 0 996 229 36 24 chr11 146183712 146184044 -2599428 + MER113 DNA MER1_type? 34 369 -152 1576 193 19 30 chr11 146184138 146184506 -2598966 + MLT1A1 LTR MaLR 1 364 -1 761 240 65 5 chr11 146184629 146184846 -2598626 - MLT1C LTR MaLR 0 467 238 2129 98 3 7 chr11 146185639 146185924 -2597548 + AluSp SINE Alu 15 298 -15 681 294 53 7 chr11 146185968 146186267 -2597205 - L1ME LINE L1 -535 5635 5323 2399 87 3 0 chr11 146186607 146186917 -2596555 - AluY SINE Alu 0 311 1 365 298 76 18 chr11 146187074 146187349 -2596123 + L1ME1 LINE L1 5382 5672 -449 3332 224 51 67 chr11 146187412 146187690 -2595782 + L1MB4 LINE L1 829 1110 -5534 2057 122 0 11 chr11 146187690 146187976 -2595496 + AluSx SINE Alu 6 288 -24 3332 224 51 67 chr11 146187976 146188407 -2595065 + L1MB4 LINE L1 1110 1546 -5098 333 0 0 0 chr11 146188407 146188444 -2595028 + (CA)n Simple_repeat Simple_repeat 2 38 0 3332 224 51 67 chr11 146188444 146189415 -2594057 + L1MB4 LINE L1 1546 5420 -1224 1901 129 0 4 chr11 146189415 146189686 -2593786 + AluSx SINE Alu 36 305 -7 3898 172 25 67 chr11 146190604 146191900 -2591572 + L1MB4 LINE L1 5404 6660 -18 2036 134 34 3 chr11 146191901 146192229 -2591243 + MER2 DNA MER2_type 7 344 -1 24 0 0 0 chr11 146192241 146192265 -2591207 + AT_rich Low_complexity Low_complexity 1 24 0 525 239 81 75 chr11 146192279 146192493 -2590979 + L1ME1 LINE L1 5802 6013 -152 207 0 0 0 chr11 146192493 146192516 -2590956 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 525 239 81 75 chr11 146192516 146192529 -2590943 + L1ME1 LINE L1 6013 6024 -141 2333 101 0 0 chr11 146192529 146192817 -2590655 - AluSg SINE Alu -22 288 1 525 239 81 75 chr11 146192817 146192934 -2590538 + L1ME1 LINE L1 6024 6152 -13 1148 167 22 0 chr11 146193414 146193636 -2589836 - L1MA7 LINE L1 -2 6289 6063 251 342 26 13 chr11 146194215 146194370 -2589102 - MIR3 SINE MIR -22 186 30 572 272 140 58 chr11 146194371 146194909 -2588563 + L2 LINE L2 2733 3311 -2 186 43 0 0 chr11 146195344 146195367 -2588105 + (TTG)n Simple_repeat Simple_repeat 2 24 0 328 374 45 7 chr11 146195470 146195625 -2587847 - MIR SINE MIR -56 206 46 2122 82 0 25 chr11 146195746 146196027 -2587445 + AluSc SINE Alu 1 274 -35 213 39 0 0 chr11 146196030 146196056 -2587416 + (GAAA)n Simple_repeat Simple_repeat 1 26 0 473 200 18 0 chr11 146196063 146196173 -2587299 + G-rich Low_complexity Low_complexity 1 112 0 2579 59 0 3 chr11 146196198 146196505 -2586967 + AluY SINE Alu 1 306 -5 595 260 26 6 chr11 146196694 146196850 -2586622 - MIR SINE MIR -47 215 58 436 290 69 82 chr11 146199431 146199748 -2583724 - L2 LINE L2 -40 3232 2920 195 310 116 9 chr11 146199941 146200173 -2583299 - L2 LINE L2 -609 2705 2449 2220 117 0 7 chr11 146200406 146200705 -2582767 + AluSq SINE Alu 1 297 -16 201 121 0 0 chr11 146200728 146200761 -2582711 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 338 223 205 54 chr11 146202239 146202405 -2581067 + MIR SINE MIR 16 206 -56 192 284 189 40 chr11 146202584 146202732 -2580740 - MIR3 SINE MIR -5 203 34 564 267 181 9 chr11 146202758 146202968 -2580504 - MIR SINE MIR -14 248 3 283 294 0 0 chr11 146203702 146203717 -2579755 + L1MC4 LINE L1 6518 6532 -1510 2143 112 30 0 chr11 146203717 146204012 -2579460 + AluSx SINE Alu 1 304 -8 283 294 0 0 chr11 146204012 146204088 -2579384 + L1MC4 LINE L1 6531 6609 -1433 325 289 185 0 chr11 146204379 146204514 -2578958 + MER5B DNA MER1_type 3 162 -16 408 306 31 21 chr11 146205622 146205795 -2577677 + MIR SINE MIR 37 212 -50 252 0 0 0 chr11 146205992 146206020 -2577452 + (TTAGGG)n Simple_repeat Simple_repeat 2 29 0 3357 246 112 12 chr11 146208235 146209265 -2574207 - L1MC4 LINE L1 -197 7845 6713 423 0 0 0 chr11 146209289 146209336 -2574136 + (CA)n Simple_repeat Simple_repeat 1 47 0 366 216 82 96 chr11 146209338 146209487 -2573985 + L1ME1 LINE L1 5942 6092 -242 2322 92 3 3 chr11 146209487 146209781 -2573691 - AluSx SINE Alu -18 294 1 366 216 82 96 chr11 146209781 146209847 -2573625 + L1ME1 LINE L1 6092 6330 -4 1331 57 109 0 chr11 146210075 146210107 -2573365 - MER107 DNA MER1_type 0 197 170 264 59 0 0 chr11 146210107 146210141 -2573331 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1331 57 109 0 chr11 146210141 146210283 -2573189 - MER107 DNA MER1_type -27 170 4 2178 114 0 0 chr11 146210315 146210620 -2572852 + AluSg SINE Alu 1 305 0 528 221 147 83 chr11 146210809 146211266 -2572206 + L1ME4a LINE L1 5613 6098 -23 639 259 74 43 chr11 146211281 146211605 -2571867 + MER46C DNA MER2_type 1 334 -4 1672 150 59 3 chr11 146211617 146211786 -2571686 - AluJo SINE Alu -10 302 109 262 0 53 0 chr11 146211786 146211824 -2571648 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1672 150 59 3 chr11 146211824 146211940 -2571532 - AluJo SINE Alu -203 109 1 203 156 44 0 chr11 146211970 146212015 -2571457 + GA-rich Low_complexity Low_complexity 2 48 0 994 300 123 8 chr11 146212104 146212614 -2570858 - MER90 LTR ERV1 0 575 7 5188 143 33 7 chr11 146213622 146214509 -2568963 - L1MC2 LINE L1 -7 6337 5428 324 218 115 11 chr11 146214509 146214596 -2568876 + MER63A DNA MER1_type 10 105 0 2588 115 0 7 chr11 146214597 146215006 -2568466 + L1MA9 LINE L1 5545 5950 -362 41540 47 5 1 chr11 146215011 146221126 -2562346 + L1PA4 LINE L1 3 6144 -11 1668 151 36 39 chr11 146221134 146221498 -2561974 + L1MA9 LINE L1 5937 6299 -13 226 167 71 36 chr11 146221498 146221582 -2561890 + L1MA9 LINE L1 6226 6312 0 573 176 25 0 chr11 146221596 146221715 -2561757 + MER63A DNA MER1_type 89 210 0 199 323 58 65 chr11 146222944 146223099 -2560373 + MIR3 SINE MIR 10 163 -45 310 289 124 21 chr11 146223777 146223941 -2559531 - MIR SINE MIR -66 142 3 2200 119 0 22 chr11 146224467 146224787 -2558685 + AluSq SINE Alu 1 313 0 392 299 66 46 chr11 146225438 146225635 -2557837 - L2 LINE L2 0 3313 3113 282 278 113 0 chr11 146225705 146225852 -2557620 - MIR SINE MIR -65 143 20 333 229 57 0 chr11 146227566 146227636 -2555836 - AluSp/q SINE Alu -13 290 217 990 139 0 0 chr11 146227636 146227773 -2555699 - AluJo SINE Alu -175 137 1 321 285 73 0 chr11 146227773 146227910 -2555562 - L1MC/D LINE L1 -2029 5779 5633 318 225 135 0 chr11 146227914 146228003 -2555469 - L1MC/D LINE L1 -2364 5444 5344 349 214 57 0 chr11 146229070 146229140 -2554332 - AluSp/q SINE Alu -13 290 217 990 139 0 0 chr11 146229140 146229277 -2554195 - AluJo SINE Alu -175 137 1 309 274 47 0 chr11 146229277 146229383 -2554089 - L1MC/D LINE L1 -2029 5779 5669 318 225 135 0 chr11 146229417 146229506 -2553966 - L1MC/D LINE L1 -2364 5444 5344 837 133 0 0 chr11 146230260 146230395 -2553077 + (ATG)n Simple_repeat Simple_repeat 2 136 0 362 324 118 7 chr11 146230910 146231046 -2552426 - MIR SINE MIR -78 184 34 356 248 46 9 chr11 146231573 146231682 -2551790 + MER63 DNA MER1_type 1 739 -323 183 293 66 28 chr11 146232010 146232116 -2551356 + L2 LINE L2 2657 2766 -548 435 323 16 0 chr11 146232126 146232253 -2551219 + L2 LINE L2 3181 3309 -4 198 203 0 51 chr11 146233628 146233687 -2549785 + L3 LINE CR1 948 1003 -574 244 345 52 9 chr11 146233705 146233821 -2549651 + L3b LINE CR1 1279 1399 -184 402 321 103 55 chr11 146234331 146234977 -2548495 - L2 LINE L2 -1 3271 2598 433 282 21 14 chr11 146236510 146236652 -2546820 + L2 LINE L2 3171 3313 0 220 325 159 22 chr11 146237704 146237975 -2545497 + L2 LINE L2 2563 2870 -444 329 274 19 28 chr11 146238790 146238896 -2544576 - MIR3 SINE MIR -27 181 77 5882 186 64 14 chr11 146239805 146240007 -2543465 + Charlie1a DNA MER1_type 3 193 -2568 2039 132 139 13 chr11 146240007 146240387 -2543085 + MSTA LTR MaLR 1 428 0 5882 186 64 14 chr11 146240387 146241472 -2542000 + Charlie1a DNA MER1_type 193 1355 -100 219 296 124 52 chr11 146241504 146241737 -2541735 + L2 LINE L2 2705 2954 -360 25 0 0 0 chr11 146242160 146242185 -2541287 + AT_rich Low_complexity Low_complexity 1 25 0 434 325 160 0 chr11 146242747 146242947 -2540525 - Charlie8 DNA MER1_type -2185 232 1 2505 201 23 11 chr11 146243872 146244394 -2539078 + L1MB5 LINE L1 5647 6174 0 741 244 29 0 chr11 146244421 146244626 -2538846 + MIR SINE MIR 42 252 -10 2092 237 108 39 chr11 146245266 146246002 -2537470 - L1MC4a LINE L1 -868 5429 5369 1489 139 8 8 chr11 146246002 146246239 -2537233 - AluSq SINE Alu -22 291 55 2092 237 108 39 chr11 146246239 146246348 -2537124 - L1MC4a LINE L1 -928 5369 5269 2155 116 3 55 chr11 146246380 146246707 -2536765 - AluSg SINE Alu 0 310 1 21 0 0 0 chr11 146246919 146246940 -2536532 + AT_rich Low_complexity Low_complexity 1 21 0 1327 157 5 0 chr11 146248317 146248527 -2534945 + AluSx SINE Alu 2 212 -100 472 51 0 0 chr11 146248527 146248586 -2534886 + AluSq/x SINE Alu 78 136 -176 2442 82 3 0 chr11 146248587 146248893 -2534579 + AluSx SINE Alu 3 309 -3 186 329 118 13 chr11 146249324 146249400 -2534072 + L2 LINE L2 3149 3232 -40 229 247 59 24 chr11 146249435 146249520 -2533952 - Charlie7 DNA MER1_type -7 2605 2518 2131 97 14 0 chr11 146249529 146249808 -2533664 + AluSc SINE Alu 1 283 -26 213 219 0 0 chr11 146249815 146249856 -2533616 + GA-rich Low_complexity Low_complexity 5 45 0 285 206 0 16 chr11 146249912 146249975 -2533497 - Charlie7 DNA MER1_type -2508 104 43 290 313 26 33 chr11 146250836 146250996 -2532476 + MER5B DNA MER1_type 23 169 -9 2160 113 13 7 chr11 146251772 146252074 -2531398 - AluSx SINE Alu -8 304 1 877 175 7 0 chr11 146252074 146252228 -2531244 - L1PA16 LINE L1 -11 6155 6001 204 277 74 61 chr11 146252234 146252382 -2531090 + L2 LINE L2 3159 3308 -5 711 282 65 2 chr11 146252461 146252679 -2530793 - MIR SINE MIR -30 232 4 1032 156 12 0 chr11 146253986 146254153 -2529319 + AluJb SINE Alu 140 308 -4 394 324 123 6 chr11 146255268 146255438 -2528034 + MIR SINE MIR 20 209 -53 189 279 0 0 chr11 146255695 146255738 -2527734 - L2 LINE L2 -8 3264 3222 1284 223 84 49 chr11 146255865 146256220 -2527252 + L1ME2 LINE L1 5710 6084 -80 822 213 43 29 chr11 146256220 146256427 -2527045 - MER63A DNA MER1_type 0 210 1 1284 223 84 49 chr11 146256427 146256501 -2526971 + L1ME2 LINE L1 6084 6154 -10 22 35 0 0 chr11 146256804 146256833 -2526639 + AT_rich Low_complexity Low_complexity 1 29 0 1614 172 57 7 chr11 146256842 146257121 -2526351 + AluJo SINE Alu 1 293 -19 2026 223 81 48 chr11 146257162 146257761 -2525711 - L1MD2 LINE L1 -219 6140 5562 2214 71 0 0 chr11 146257761 146258027 -2525445 + AluY SINE Alu 37 302 -9 14931 87 7 1 chr11 146258034 146260898 -2522574 + L1PA7 LINE L1 3262 6154 0 2026 223 81 48 chr11 146260898 146261831 -2521641 - L1MD2 LINE L1 -802 5557 4454 2466 68 3 0 chr11 146261925 146262220 -2521252 - AluY SINE Alu -15 296 1 2310 133 22 11 chr11 146262221 146262581 -2520891 + MLT2D LTR ERVL 3 366 -48 216 0 0 0 chr11 146262602 146262626 -2520846 + (CA)n Simple_repeat Simple_repeat 2 25 0 283 184 0 0 chr11 146262656 146262705 -2520767 + MLT2D LTR ERVL 464 512 -8 414 267 15 30 chr11 146262707 146262838 -2520634 - L1MD2 LINE L1 -1801 4345 4217 811 217 48 0 chr11 146263299 146263465 -2520007 + FAM SINE Alu 1 174 -1 1762 244 36 33 chr11 146264989 146265509 -2517963 - L1ME3A LINE L1 -23 6147 5626 1924 147 3 25 chr11 146266440 146266759 -2516713 + AluJb SINE Alu 1 312 0 262 378 33 6 chr11 146266778 146266958 -2516514 + MIR SINE MIR 73 257 -5 2506 193 31 4 chr11 146267110 146267633 -2515839 + L1PBa LINE L1 6 542 -6321 4816 159 32 6 chr11 146267694 146269044 -2514428 + L1PBa LINE L1 640 2211 -4652 3538 107 0 30 chr11 146269044 146269520 -2513952 + L1PB1 LINE L1 5632 6092 -59 2413 86 0 3 chr11 146269520 146269823 -2513649 + AluY SINE Alu 1 302 -9 3538 107 0 30 chr11 146269823 146269879 -2513593 + L1PB1 LINE L1 6092 6148 -3 2347 106 0 0 chr11 146269903 146270205 -2513267 + AluSx SINE Alu 1 302 -10 2506 74 3 0 chr11 146270205 146270515 -2512957 + AluY SINE Alu 1 311 0 1545 194 66 31 chr11 146271369 146271822 -2511650 + L1MEc LINE L1 767 1235 -5161 225 313 65 14 chr11 146272072 146272286 -2511186 + L1M4 LINE L1 3792 4016 -2130 2138 246 58 15 chr11 146272287 146273461 -2510011 + L1MEc LINE L1 35 1347 -5049 343 141 14 0 chr11 146273461 146273532 -2509940 - MLT2B1 LTR ERVL 0 520 449 30 27 0 0 chr11 146273533 146273570 -2509902 + AT_rich Low_complexity Low_complexity 1 37 0 731 154 8 54 chr11 146273669 146273799 -2509673 - MLT2B1 LTR ERVL -40 480 357 788 216 57 5 chr11 146273817 146273903 -2509569 - Ricksha DNA DNA -1602 444 349 16306 155 63 24 chr11 146273903 146274105 -2509367 - ERVL LTR ERVL -1 5763 5570 1969 144 0 3 chr11 146274105 146274396 -2509076 + AluJb SINE Alu 3 292 -20 16306 155 63 24 chr11 146274396 146277069 -2506403 - ERVL LTR ERVL -194 5570 2778 308 269 100 0 chr11 146277117 146277247 -2506225 + L1MCa LINE L1 1495 1637 -4905 2224 112 3 13 chr11 146277249 146277554 -2505918 + AluSq SINE Alu 1 302 -11 2843 177 54 24 chr11 146277554 146277714 -2505758 + L1MC1 LINE L1 826 980 -5446 1974 107 46 0 chr11 146277714 146277995 -2505477 + AluSx SINE Alu 1 294 -18 2843 177 54 24 chr11 146277995 146278467 -2505005 + L1MC1 LINE L1 980 1477 -4949 1710 181 43 21 chr11 146278463 146278675 -2504797 - L1 LINE L1 -870 5276 5051 * 1927 156 10 3 chr11 146278675 146278982 -2504490 - AluSx SINE Alu -3 309 1 1710 181 43 21 chr11 146278982 146279144 -2504328 - L1 LINE L1 -1095 5051 4894 6381 199 37 26 chr11 146279144 146279970 -2503502 + L1MC1 LINE L1 3757 4572 -2041 2430 81 7 0 chr11 146279970 146280268 -2503204 - AluSg SINE Alu -10 300 1 6381 199 37 26 chr11 146280268 146282224 -2501248 + L1MC1 LINE L1 4572 6571 -42 304 271 0 25 chr11 146282338 146282460 -2501012 + L1MCa LINE L1 2586 2704 -4121 1117 130 27 11 chr11 146283154 146283339 -2500133 - MER61E LTR ERV1 -43 526 339 238 260 0 20 chr11 146283383 146283433 -2500039 - MER61E LTR ERV1 -404 165 117 234 229 73 94 chr11 146283409 146283505 -2499967 - MER61E LTR ERV1 -379 190 97 * 446 169 26 0 chr11 146283506 146283583 -2499889 - LTR25 LTR ERV1 -438 356 278 3426 215 9 23 chr11 146283794 146284586 -2498886 - MER61E-int LTR ERV1 -2 6994 6214 * 12312 162 47 34 chr11 146284584 146284985 -2498487 - MER61E-int LTR ERV1 -1609 5387 4993 2087 113 58 0 chr11 146284985 146285276 -2498196 - AluSx SINE Alu -4 308 1 12312 162 47 34 chr11 146285276 146286121 -2497351 - MER61E-int LTR ERV1 -2003 4993 4161 6126 47 9 0 chr11 146286121 146286860 -2496612 + L1PA5 LINE L1 5407 6152 -2 12312 162 47 34 chr11 146286860 146288254 -2495218 - MER61E-int LTR ERV1 -2835 4161 2710 2166 135 0 0 chr11 146288267 146288563 -2494909 + AluSx SINE Alu 1 296 -16 865 231 36 4 chr11 146288570 146288818 -2494654 - MER61E-int LTR ERV1 -4569 2522 2169 405 186 98 20 chr11 146288847 146288949 -2494523 - MER61E-int LTR ERV1 -5571 1520 1411 * 2009 235 28 18 chr11 146288942 146289783 -2493689 - LTR25-int LTR ERV1 -5384 1612 707 1885 114 158 9 chr11 146289786 146290103 -2493369 - THE1B LTR MaLR 0 364 1 3316 102 0 30 chr11 146290103 146290572 -2492900 - THE1B-int LTR MaLR 0 1580 1126 684 256 6 0 chr11 146290646 146290826 -2492646 - L1M4 LINE L1 -1545 4601 4421 617 243 30 105 chr11 146290823 146291222 -2492250 - L1MC5 LINE L1 -743 7218 6850 * 314 336 59 0 chr11 146291396 146291515 -2491957 - LTR16C LTR ERVL -197 294 169 216 0 0 0 chr11 146292001 146292025 -2491447 + (T)n Simple_repeat Simple_repeat 1 24 0 31 0 0 0 chr11 146292820 146292851 -2490621 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr11 146293156 146293186 -2490286 + AT_rich Low_complexity Low_complexity 1 30 0 1332 170 0 5 chr11 146293439 146293657 -2489815 - Tigger5 DNA MER2_type 0 2323 2107 1979 137 10 13 chr11 146293727 146294026 -2489446 + AluSx SINE Alu 1 298 -14 2726 241 23 5 chr11 146294168 146294915 -2488557 + L1M4 LINE L1 2627 3390 -2756 1128 188 80 111 chr11 146294915 146295292 -2488180 + MLT1A1 LTR MaLR 1 365 0 2726 241 23 5 chr11 146295292 146295341 -2488131 + L1M4 LINE L1 3390 3437 -2709 2539 138 40 11 chr11 146295376 146295824 -2487648 + L1MB4 LINE L1 5712 6172 -8 1812 145 47 27 chr11 146295921 146296218 -2487254 - AluJo SINE Alu 0 312 10 193 246 33 19 chr11 146296362 146296432 -2487040 - MIR SINE MIR -80 128 52 902 249 90 97 chr11 146297602 146297980 -2485492 - MLT1J LTR MaLR -7 504 125 2006 138 131 18 chr11 146297980 146298363 -2485109 - MSTA LTR MaLR 0 428 3 9486 135 30 33 chr11 146298366 146299949 -2483523 - MSTA-int LTR MaLR 0 1580 3 1958 160 134 11 chr11 146299951 146300332 -2483140 - MSTA LTR MaLR 0 428 1 902 249 90 97 chr11 146300332 146300368 -2483104 - MLT1J LTR MaLR -389 122 86 753 161 0 23 chr11 146301069 146301199 -2482273 + FLAM_C SINE Alu 3 129 -4 16254 194 56 26 chr11 146301209 146305249 -2478223 + L1PB2 LINE L1 1 3918 -2944 2209 114 0 3 chr11 146305249 146305546 -2477926 + AluSq SINE Alu 4 299 -14 1606 141 12 8 chr11 146305556 146305797 -2477675 + AluSg SINE Alu 1 242 -68 4983 58 1 130 chr11 146305799 146306589 -2476883 - LTR12 LTR ERV1 0 688 1 377 103 0 0 chr11 146306589 146306647 -2476825 + AluSg SINE Alu 241 298 -2 16254 194 56 26 chr11 146306647 146306941 -2476531 + L1PB2 LINE L1 3925 4496 -2366 13622 197 40 21 chr11 146306965 146312565 -2470907 + L1PB1 LINE L1 6 5500 -1367 2289 103 3 0 chr11 146312565 146312865 -2470607 + AluSq SINE Alu 1 301 -12 13622 197 40 21 chr11 146312865 146313402 -2470070 + L1PB1 LINE L1 5500 6025 -842 399 113 0 0 chr11 146313402 146313464 -2470008 + (TG)n Simple_repeat Simple_repeat 1 62 0 13622 197 40 21 chr11 146313464 146313814 -2469658 + L1PB1 LINE L1 6025 6867 0 5913 157 22 64 chr11 146313822 146316136 -2467336 + L1PB2 LINE L1 4493 6903 36 2178 93 21 7 chr11 146316136 146316427 -2467045 + AluSc SINE Alu 1 295 -14 186 43 0 0 chr11 146316427 146316450 -2467022 + (TA)n Simple_repeat Simple_repeat 1 23 0 5913 157 22 64 chr11 146316450 146316622 -2466850 + L1PB2 LINE L1 6682 6860 -7 934 196 12 0 chr11 146316626 146316789 -2466683 + AluJb SINE Alu 121 285 -27 2183 112 10 0 chr11 146316896 146317201 -2466271 + AluSp SINE Alu 2 309 -4 3538 124 105 45 chr11 146317994 146319058 -2464414 - LTR12 LTR ERV1 0 2427 1 232 204 74 0 chr11 146319143 146319197 -2464275 + L2 LINE L2 3211 3268 -45 183 42 0 0 chr11 146319240 146319264 -2464208 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 219 146 0 0 chr11 146319699 146319740 -2463732 + (CGGGG)n Simple_repeat Simple_repeat 2 42 0 2655 41 0 25 chr11 146320650 146320966 -2462506 - AluY SINE Alu -3 308 1 298 314 51 0 chr11 146322395 146322513 -2460959 - MIR SINE MIR -109 153 30 201 365 0 29 chr11 146322676 146322780 -2460692 - MIR3 SINE MIR -4 204 104 544 232 47 58 chr11 146323190 146323380 -2460092 - MLT1J LTR MaLR -19 492 305 293 60 60 0 chr11 146323429 146323479 -2459993 + T-rich Low_complexity Low_complexity 5 57 0 204 114 0 29 chr11 146323479 146323514 -2459958 + (TC)n Simple_repeat Simple_repeat 2 35 0 1861 91 8 4 chr11 146323531 146323774 -2459698 - AluSg SINE Alu -66 244 1 23 0 0 0 chr11 146323782 146323805 -2459667 + AT_rich Low_complexity Low_complexity 1 23 0 344 274 28 54 chr11 146323808 146323952 -2459520 - MLT1J LTR MaLR -335 176 68 2334 97 0 7 chr11 146323952 146324261 -2459211 + AluSq SINE Alu 1 307 -6 344 274 28 54 chr11 146324261 146324328 -2459144 - MLT1J LTR MaLR -443 68 1 267 318 19 19 chr11 146324426 146324580 -2458892 - MER5A DNA MER1_type -35 154 1 638 256 91 39 chr11 146324757 146325065 -2458407 - HAL1 LINE L1 -111 2396 2073 249 136 0 0 chr11 146325315 146325359 -2458113 + MER69 DNA AcHobo 2384 2427 -99 481 173 10 48 chr11 146325386 146325490 -2457982 + MER69 DNA AcHobo 2411 2510 -16 1345 223 99 99 chr11 146325499 146326314 -2457158 - HAL1 LINE L1 -845 1662 848 2511 79 0 0 chr11 146326759 146327062 -2456410 - AluSg SINE Alu -7 303 1 306 305 48 0 chr11 146327363 146327468 -2456004 + L2 LINE L2 3153 3262 -10 242 292 177 8 chr11 146328733 146328863 -2454609 - L2 LINE L2 -188 3084 2933 547 253 42 80 chr11 146329213 146329525 -2453947 - L2 LINE L2 -829 2485 2186 453 328 13 6 chr11 146330126 146330192 -2453280 - MIR3 SINE MIR -16 192 128 2545 64 0 0 chr11 146330192 146330503 -2452969 + AluY SINE Alu 1 311 0 453 328 13 6 chr11 146330503 146330607 -2452865 - MIR3 SINE MIR -80 128 20 829 218 0 5 chr11 146330639 146330841 -2452631 - AluY SINE Alu -5 306 106 180 111 0 0 chr11 146330949 146330976 -2452496 + (T)n Simple_repeat Simple_repeat 1 27 0 239 299 0 13 chr11 146330990 146331067 -2452405 + T-rich Low_complexity Low_complexity 5 80 0 2199 76 41 7 chr11 146331302 146331593 -2451879 - AluY SINE Alu -10 301 1 1070 124 43 198 chr11 146331793 146332116 -2451356 - Tigger3(Golem) DNA MER2_type -2 3027 2755 2255 98 7 0 chr11 146332119 146332415 -2451057 + AluSp SINE Alu 1 298 -15 1181 147 0 0 chr11 146332416 146332586 -2450886 + AluSg/x SINE Alu 132 301 -11 502 182 0 0 chr11 146332586 146332663 -2450809 - Tigger3(Golem) DNA MER2_type -2952 77 1 417 277 63 19 chr11 146333641 146333800 -2449672 - MIR SINE MIR -76 186 21 254 309 81 27 chr11 146334188 146334337 -2449135 + L2 LINE L2 2924 3080 -192 2643 136 98 22 chr11 146334506 146334646 -2448826 + L1MB7 LINE L1 4865 4993 -1191 2026 134 14 3 chr11 146334646 146334936 -2448536 + AluSq SINE Alu 1 293 -20 2643 136 98 22 chr11 146334936 146335545 -2447927 + L1MB7 LINE L1 4993 5679 -505 2514 207 112 28 chr11 146335545 146336221 -2447251 - MER44D DNA MER2_type 0 605 1 2643 136 98 22 chr11 146336221 146336384 -2447088 + L1MB7 LINE L1 5679 5828 -356 2405 94 0 3 chr11 146336384 146336693 -2446779 + AluSx SINE Alu 1 308 -4 265 289 22 0 chr11 146336887 146336977 -2446495 - MER20 DNA MER1_type 0 219 128 820 200 51 5 chr11 146336977 146337172 -2446300 - L1MB7 LINE L1 -205 5979 5776 1497 127 71 8 chr11 146337179 146337491 -2445981 - MLT1B LTR MaLR -9 381 1 5213 168 33 158 chr11 146337493 146337834 -2445638 - MLT1B-int LTR MaLR -2 1369 987 2114 126 0 7 chr11 146337834 146338135 -2445337 - AluSq SINE Alu -14 299 1 5213 168 33 158 chr11 146338135 146339130 -2444342 - MLT1B-int LTR MaLR -384 987 -131 2234 129 0 0 chr11 146339130 146339441 -2444031 - AluSx SINE Alu -1 311 1 5213 168 33 158 chr11 146339441 146339523 -2443949 - MLT1B-int LTR MaLR -1502 4294967165 160 2322 88 7 0 chr11 146339523 146339819 -2443653 - AluSx SINE Alu -14 298 1 5213 168 33 158 chr11 146339819 146339963 -2443509 - MLT1B-int LTR MaLR -1210 161 1 2014 165 7 47 chr11 146339963 146340182 -2443290 - MLT1B LTR MaLR 0 390 193 2360 89 0 0 chr11 146340182 146340475 -2442997 - AluSq SINE Alu -20 293 1 2014 165 7 47 chr11 146340475 146340660 -2442812 - MLT1B LTR MaLR -197 193 2 2146 119 3 3 chr11 146340706 146341016 -2442456 - AluSx SINE Alu 0 312 3 1346 200 44 78 chr11 146341234 146341594 -2441878 - L1MB7 LINE L1 -18 6166 5819 2329 92 0 0 chr11 146341594 146341888 -2441584 - AluY SINE Alu -15 296 3 180 0 0 0 chr11 146341892 146341912 -2441560 + (T)n Simple_repeat Simple_repeat 1 20 0 852 254 35 4 chr11 146342221 146342449 -2441023 - MLT-int LTR MaLR -1010 725 491 2173 103 3 6 chr11 146342450 146342762 -2440710 - AluSq SINE Alu 0 313 3 472 51 0 0 chr11 146342763 146342822 -2440650 - AluSq/x SINE Alu -176 136 78 1235 162 5 0 chr11 146342822 146343032 -2440440 - AluSx SINE Alu -100 212 2 21 0 0 0 chr11 146344409 146344430 -2439042 + AT_rich Low_complexity Low_complexity 1 21 0 2285 73 3 13 chr11 146344641 146344954 -2438518 + AluY SINE Alu 1 310 -1 1366 210 69 31 chr11 146345808 146346260 -2437212 + L1MEc LINE L1 767 1235 -5161 452 308 65 14 chr11 146346510 146346724 -2436748 + L1M4 LINE L1 3792 4016 -2130 2148 247 57 14 chr11 146346725 146347899 -2435573 + L1MEc LINE L1 35 1347 -5049 333 141 14 0 chr11 146347899 146347970 -2435502 - MLT2B1 LTR ERVL 0 520 449 30 27 0 0 chr11 146347971 146348008 -2435464 + AT_rich Low_complexity Low_complexity 1 37 0 728 154 8 54 chr11 146348107 146348237 -2435235 - MLT2B1 LTR ERVL -40 480 357 783 216 57 5 chr11 146348255 146348341 -2435131 - Ricksha DNA DNA -1602 444 349 6158 148 57 35 chr11 146348341 146348543 -2434929 - ERVL LTR ERVL -1 5763 5567 1851 144 0 3 chr11 146348543 146348834 -2434638 + AluJb SINE Alu 3 292 -20 6158 148 57 35 chr11 146348834 146349747 -2433725 - ERVL LTR ERVL -197 5567 4623 5883 142 20 10 chr11 146349847 146351068 -2432404 + L1PB2 LINE L1 4739 5947 -204 2044 93 21 7 chr11 146351068 146351358 -2432114 + AluSc SINE Alu 1 294 -15 393 75 0 0 chr11 146351358 146351411 -2432061 + (TA)n Simple_repeat Simple_repeat 2 54 0 5883 142 20 10 chr11 146351411 146351583 -2431889 + L1PB2 LINE L1 5946 6144 -7 870 190 12 0 chr11 146351587 146351750 -2431722 + AluJo SINE Alu 121 285 -27 2043 115 10 0 chr11 146351859 146352164 -2431308 + AluSp SINE Alu 2 309 -4 3581 124 105 45 chr11 146352957 146354021 -2429451 - LTR12 LTR ERV1 0 2427 1 253 204 74 0 chr11 146354106 146354160 -2429312 + L2 LINE L2 3211 3268 -45 183 42 0 0 chr11 146354203 146354227 -2429245 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 252 122 0 0 chr11 146354662 146354703 -2428769 + (CGGGG)n Simple_repeat Simple_repeat 2 42 0 2459 41 3 29 chr11 146355613 146355928 -2427544 - AluY SINE Alu -4 307 1 344 314 51 0 chr11 146357357 146357475 -2425997 - MIR SINE MIR -109 153 30 229 374 0 28 chr11 146357638 146357745 -2425727 - MIR3 SINE MIR -4 204 101 185 135 135 0 chr11 146358065 146358102 -2425370 + L2 LINE L2 3214 3255 -17 548 236 42 58 chr11 146358152 146358343 -2425129 - MLT1J LTR MaLR -19 492 305 293 60 60 0 chr11 146358392 146358442 -2425030 + T-rich Low_complexity Low_complexity 5 57 0 204 114 0 29 chr11 146358442 146358477 -2424995 + (TC)n Simple_repeat Simple_repeat 2 35 0 1891 82 4 0 chr11 146358494 146358737 -2424735 - AluSg SINE Alu -66 244 1 271 250 22 125 chr11 146358763 146358930 -2424542 - MLT1L LTR MaLR -335 176 73 2128 89 0 7 chr11 146358930 146359223 -2424249 + AluSq SINE Alu 17 307 -6 271 250 22 125 chr11 146359223 146359290 -2424182 - MLT1L LTR MaLR -438 73 1 321 318 19 19 chr11 146359388 146359542 -2423930 - MER5A DNA MER1_type -35 154 1 708 250 91 39 chr11 146359719 146360027 -2423445 - HAL1 LINE L1 -111 2396 2073 245 136 0 0 chr11 146360274 146360318 -2423154 + MER69 DNA AcHobo 2384 2427 -99 476 173 10 48 chr11 146360345 146360449 -2423023 + MER69 DNA AcHobo 2411 2510 -16 1376 226 98 98 chr11 146360458 146361273 -2422199 - HAL1 LINE L1 -845 1662 848 2380 79 0 0 chr11 146361717 146362020 -2421452 - AluSg SINE Alu -7 303 1 345 309 45 0 chr11 146362321 146362431 -2421041 + L2 LINE L2 3153 3267 -5 280 292 177 8 chr11 146363691 146363821 -2419651 - L2 LINE L2 -188 3084 2933 649 264 52 77 chr11 146364119 146364483 -2418989 - L2 LINE L2 -774 2540 2186 181 318 15 15 chr11 146365083 146365149 -2418323 - MIR3 SINE MIR -16 192 127 1461 169 7 3 chr11 146365149 146365451 -2418021 + AluY SINE Alu 1 303 -8 310 232 21 53 chr11 146365565 146365660 -2417812 - MIR SINE MIR -94 114 23 2312 58 41 0 chr11 146365693 146365986 -2417486 - AluY SINE Alu -6 305 1 1095 127 40 198 chr11 146366186 146366510 -2416962 - Tigger3(Golem) DNA MER2_type -2 3027 2755 2128 98 7 0 chr11 146366513 146366809 -2416663 + AluSp SINE Alu 1 298 -15 1118 147 0 0 chr11 146366810 146366980 -2416492 + AluSg/x SINE Alu 132 301 -11 502 182 0 0 chr11 146366980 146367057 -2416415 - Tigger3(Golem) DNA MER2_type -2952 77 1 496 284 153 27 chr11 146367988 146368210 -2415262 - MIR SINE MIR -10 252 3 292 316 79 26 chr11 146368582 146368734 -2414738 + L2 LINE L2 2924 3083 -189 3880 152 79 47 chr11 146368900 146369040 -2414432 + L1MB7 LINE L1 4865 4999 -1185 1937 135 14 0 chr11 146369040 146369329 -2414143 + AluSq SINE Alu 1 293 -20 3880 152 79 47 chr11 146369329 146369938 -2413534 + L1MB7 LINE L1 4999 5587 -597 2471 209 112 28 chr11 146369938 146370614 -2412858 - MER44D DNA MER2_type 0 605 1 3880 152 79 47 chr11 146370614 146370777 -2412695 + L1MB7 LINE L1 5587 5743 -441 2184 113 0 0 chr11 146370777 146371078 -2412394 + AluSg SINE Alu 1 301 -9 2128 99 0 0 chr11 146371082 146371376 -2412096 + AluY SINE Alu 3 296 -15 3880 152 79 47 chr11 146371376 146371736 -2411736 + L1MB7 LINE L1 5745 6166 -18 2242 97 7 0 chr11 146371951 146372261 -2411211 + AluSx SINE Alu 1 312 0 2230 159 13 33 chr11 146372307 146372484 -2410988 + MLT1B LTR MaLR 2 181 -209 2232 89 0 0 chr11 146372484 146372777 -2410695 + AluSq SINE Alu 1 293 -20 2230 159 13 33 chr11 146372777 146372996 -2410476 + MLT1B LTR MaLR 181 390 0 5230 169 33 158 chr11 146372996 146373140 -2410332 + MLT1B-int LTR MaLR 1 161 -1210 2291 87 0 0 chr11 146373140 146373438 -2410034 + AluSx SINE Alu 1 298 -14 5230 169 33 158 chr11 146373438 146373520 -2409952 + MLT1B-int LTR MaLR 161 252 -1119 2126 128 0 0 chr11 146373520 146373832 -2409640 + AluSx SINE Alu 1 312 0 5230 169 33 158 chr11 146373832 146374827 -2408645 + MLT1B-int LTR MaLR 252 987 -384 1999 133 0 0 chr11 146374827 146375128 -2408344 + AluSq SINE Alu 1 301 -12 5230 169 33 158 chr11 146375128 146375469 -2408003 + MLT1B-int LTR MaLR 987 1369 -2 1498 127 71 8 chr11 146375471 146375783 -2407689 + MLT1B LTR MaLR 1 381 -9 822 200 51 5 chr11 146375790 146375985 -2407487 + L1MB7 LINE L1 5776 5979 -205 303 278 22 0 chr11 146375985 146376075 -2407397 + MER20 DNA MER1_type 128 219 0 2074 120 0 3 chr11 146376269 146376578 -2406894 - AluSx SINE Alu -4 308 1 1004 112 176 43 chr11 146376578 146376765 -2406707 - AluJb SINE Alu -16 296 85 2168 114 0 0 chr11 146376765 146377073 -2406399 - AluSx SINE Alu -4 308 1 456 262 28 14 chr11 146377208 146377353 -2406119 - MER20 DNA MER1_type 0 219 73 232 152 0 0 chr11 146377452 146377498 -2405974 - Alu SINE Alu 0 303 258 314 301 65 41 chr11 146377500 146377623 -2405849 - L1MC4a LINE L1 -1921 5887 5762 219 167 0 0 chr11 146378105 146378147 -2405325 + GA-rich Low_complexity Low_complexity 3 44 0 1642 142 17 40 chr11 146378524 146378826 -2404646 - AluJb SINE Alu -17 295 1 2095 92 25 7 chr11 146379591 146379875 -2403597 + AluSq SINE Alu 1 289 -24 216 0 0 0 chr11 146379937 146379961 -2403511 + (A)n Simple_repeat Simple_repeat 1 24 0 304 282 64 21 chr11 146379977 146380165 -2403307 + L1M4b LINE L1 59 254 -6605 327 305 103 49 chr11 146380297 146380500 -2402972 + L1M4b LINE L1 1137 1350 -5597 2237 91 0 19 chr11 146380570 146380888 -2402584 - AluSx SINE Alu 0 312 1 1105 253 87 22 chr11 146380888 146381339 -2402133 + L1M4b LINE L1 1513 1992 -4863 3042 183 14 13 chr11 146381339 146381973 -2401499 + L1MA9 LINE L1 4695 5329 -817 1798 103 4 19 chr11 146381973 146382235 -2401237 - AluSx SINE Alu -54 258 1 369 237 79 9 chr11 146382248 146382362 -2401110 - L1MCc LINE L1 -6269 154 33 5665 138 16 37 chr11 146382606 146383395 -2400077 + L1MA9 LINE L1 5317 6081 -231 1595 180 3 7 chr11 146383395 146383684 -2399788 + AluJo SINE Alu 1 288 -24 5665 138 16 37 chr11 146383684 146383912 -2399560 + L1MA9 LINE L1 6081 6312 0 370 247 12 77 chr11 146383906 146384076 -2399396 + L1M4b LINE L1 2445 2603 -4535 * 336 48 0 0 chr11 146384250 146384292 -2399180 + (TG)n Simple_repeat Simple_repeat 1 42 0 285 29 0 0 chr11 146384328 146384362 -2399110 + (TG)n Simple_repeat Simple_repeat 1 34 0 449 268 44 63 chr11 146384368 146384730 -2398742 + L1M4b LINE L1 2690 3044 -4094 314 249 83 122 chr11 146384727 146385176 -2398296 + HAL1 LINE L1 1640 2070 -437 * 1838 136 10 3 chr11 146385176 146385470 -2398002 + AluSx SINE Alu 1 296 -16 314 249 83 122 chr11 146385470 146385513 -2397959 + HAL1 LINE L1 2070 2113 -394 958 291 125 29 chr11 146385513 146386067 -2397405 - L2 LINE L2 0 3313 2706 322 47 0 0 chr11 146386172 146386215 -2397257 + MADE1 DNA Mariner 1 43 -37 443 206 96 37 chr11 146386239 146386375 -2397097 + HAL1 LINE L1 2341 2484 -23 5398 44 48 8 chr11 146386398 146387516 -2395956 - SVA Other Other -955 1385 29 1261 176 164 37 chr11 146387684 146388008 -2395464 - MLT1A1 LTR MaLR 0 365 1 5968 194 132 76 chr11 146388008 146389133 -2394339 - MLT1A1-int LTR MaLR 0 1735 496 2214 95 0 6 chr11 146389133 146389448 -2394024 - AluSq SINE Alu 0 313 1 5968 194 132 76 chr11 146389448 146389972 -2393500 - MLT1A1-int LTR MaLR -1239 496 3 898 184 154 90 chr11 146389973 146390245 -2393227 - MLT1A1 LTR MaLR 0 365 65 2477 74 0 0 chr11 146390245 146390556 -2392916 + AluSx SINE Alu 1 311 -1 898 184 154 90 chr11 146390556 146390626 -2392846 - MLT1A1 LTR MaLR -300 65 1 315 280 118 11 chr11 146390949 146391042 -2392430 - L1M LINE L1 -2432 5376 5274 312 282 68 34 chr11 146392614 146392731 -2390741 - L2 LINE L2 -4 3309 3189 1914 119 17 7 chr11 146395213 146395506 -2387966 - AluSx SINE Alu -14 298 3 2484 63 0 0 chr11 146395553 146395855 -2387617 - AluY SINE Alu -9 302 1 1889 137 7 3 chr11 146395855 146396147 -2387325 - AluSg SINE Alu -17 293 1 604 268 65 6 chr11 146396936 146397104 -2386368 - MIR SINE MIR -22 240 63 276 122 0 0 chr11 146397211 146397252 -2386220 + MADE1 DNA Mariner 1 41 -39 2080 82 4 0 chr11 146398553 146398822 -2384650 + AluY SINE Alu 20 289 -22 187 239 22 0 chr11 146398832 146398878 -2384594 - L2 LINE L2 -5 3308 3262 2238 85 0 7 chr11 146399296 146399591 -2383881 + AluSc SINE Alu 1 293 -16 210 200 14 100 chr11 146399596 146399666 -2383806 - MIR SINE MIR -163 99 36 2107 110 0 13 chr11 146400373 146400681 -2382791 + AluSx SINE Alu 1 304 -8 24 0 0 0 chr11 146401093 146401117 -2382355 + AT_rich Low_complexity Low_complexity 1 24 0 2520 20 0 3 chr11 146401706 146401999 -2381473 - AluY SINE Alu -19 292 1 1939 82 36 7 chr11 146402324 146402603 -2380869 - AluSc SINE Alu -22 287 1 279 0 0 0 chr11 146402607 146402638 -2380834 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 884 193 71 5 chr11 146402643 146402840 -2380632 - MER58A DNA MER1_type -14 210 1 21 36 0 0 chr11 146403264 146403292 -2380180 + AT_rich Low_complexity Low_complexity 1 28 0 309 253 105 0 chr11 146404399 146404494 -2378978 + L2 LINE L2 48 152 -3162 * 316 214 331 40 chr11 146404484 146404732 -2378740 + L2 LINE L2 2984 3303 -10 241 202 273 30 chr11 146405294 146405393 -2378079 + L2 LINE L2 3187 3309 -4 2133 95 31 0 chr11 146406315 146406609 -2376863 - AluSx SINE Alu -9 303 1 429 279 104 54 chr11 146407028 146407326 -2376146 + L1M4 LINE L1 5063 5375 -771 227 128 43 0 chr11 146407326 146407373 -2376099 + L1M1 LINE L1 5383 5431 -869 1900 115 34 3 chr11 146407739 146408034 -2375438 + AluSp SINE Alu 1 304 -9 271 190 135 105 chr11 146409374 146409574 -2373898 - L1MC5 LINE L1 -54 7907 7702 935 150 27 0 chr11 146409574 146409721 -2373751 - FRAM SINE Alu -15 151 1 584 272 86 58 chr11 146409731 146409988 -2373484 + L2 LINE L2 1534 1797 -1517 1052 222 100 44 chr11 146409989 146410309 -2373163 + MER2 DNA MER2_type 2 339 -6 976 309 104 14 chr11 146410487 146411302 -2372170 + L2 LINE L2 2383 3272 -41 417 322 72 7 chr11 146411330 146411482 -2371990 + MIR SINE MIR 100 261 -1 349 301 78 13 chr11 146412279 146412432 -2371040 - MIR SINE MIR -46 216 54 2068 123 7 3 chr11 146414648 146414956 -2368516 - AluSq SINE Alu -4 309 1 1673 187 113 14 chr11 146414995 146415428 -2368044 + Charlie4a DNA MER1_type 30 505 -3 282 261 118 33 chr11 146416896 146417018 -2366454 + MIR SINE MIR 21 153 -109 354 308 103 8 chr11 146417739 146417856 -2365616 - L2 LINE L2 -2 3270 3143 226 233 111 22 chr11 146418275 146418365 -2365107 + MER58B DNA MER1_type 242 339 -2 415 316 124 36 chr11 146418455 146418905 -2364567 + L2 LINE L2 1851 2376 -938 1812 129 7 11 chr11 146418905 146419215 -2364257 + AluSx SINE Alu 1 309 0 415 316 124 36 chr11 146419215 146419398 -2364074 + L2 LINE L2 2376 2541 -773 368 316 66 87 chr11 146419488 146419823 -2363649 + L2 LINE L2 2945 3272 0 866 128 0 0 chr11 146421788 146421913 -2361559 - FRAM SINE Alu -17 159 35 21 0 0 0 chr11 146421919 146421940 -2361532 + AT_rich Low_complexity Low_complexity 1 21 0 272 317 58 0 chr11 146422699 146422803 -2360669 + MIR SINE MIR 3 112 -150 425 124 44 168 chr11 146425092 146425229 -2358243 + MER104 DNA Tc2 5 124 -56 1273 277 51 54 chr11 146426198 146426756 -2356716 + L1MC4 LINE L1 7170 7727 -315 2362 63 0 3 chr11 146426756 146427056 -2356416 + AluY SINE Alu 1 299 -12 1273 277 51 54 chr11 146427056 146427204 -2356268 + L1MC4 LINE L1 7727 7874 -168 279 226 0 16 chr11 146427300 146427362 -2356110 + L1ME3A LINE L1 6015 6075 -95 566 105 0 57 chr11 146427865 146427970 -2355502 - L1MB4 LINE L1 -14 6166 6068 1929 106 62 10 chr11 146427971 146428263 -2355209 - AluSx SINE Alu -5 307 1 321 26 0 0 chr11 146428953 146428991 -2354481 + (TG)n Simple_repeat Simple_repeat 2 39 0 198 281 16 31 chr11 146429139 146429203 -2354269 - L2 LINE L2 -522 2792 2730 271 285 78 55 chr11 146429209 146429390 -2354082 + L2 LINE L2 2277 3272 0 2487 106 19 3 chr11 146431071 146431439 -2352033 - L1PB1 LINE L1 -5 6146 5773 195 209 0 23 chr11 146432129 146432172 -2351300 - MIR SINE MIR -61 147 106 1653 170 13 22 chr11 146432276 146432588 -2350884 + AluJb SINE Alu 1 309 -3 231 273 263 24 chr11 146432661 146432870 -2350602 - MIR SINE MIR 0 262 4 220 381 52 0 chr11 146433354 146433451 -2350021 + MIR3 SINE MIR 97 198 -10 310 298 84 0 chr11 146435210 146435341 -2348131 - MIR SINE MIR -2 260 119 765 137 28 37 chr11 146435857 146436016 -2347456 - L1MC1 LINE L1 -1 6332 6173 2080 70 3 33 chr11 146436016 146436315 -2347157 + AluSc SINE Alu 1 290 -19 765 137 28 37 chr11 146436315 146436711 -2346761 - L1MC1 LINE L1 -160 6173 5698 1810 125 0 14 chr11 146436801 146437081 -2346391 + AluJb SINE Alu 37 312 0 746 173 167 6 chr11 146437081 146437357 -2346115 - L1MCa LINE L1 -4479 1947 1538 6753 154 66 35 chr11 146437369 146437689 -2345783 - L1MCa LINE L1 -5008 1418 1109 2163 125 0 0 chr11 146437689 146438001 -2345471 - AluSx SINE Alu 0 312 1 6753 154 66 35 chr11 146438001 146439036 -2344436 - L1MCa LINE L1 -5317 1109 21 30 0 0 0 chr11 146439091 146439121 -2344351 + AT_rich Low_complexity Low_complexity 1 30 0 333 0 0 0 chr11 146439703 146439740 -2343732 + (GAA)n Simple_repeat Simple_repeat 2 38 0 22 0 0 0 chr11 146442348 146442370 -2341102 + AT_rich Low_complexity Low_complexity 1 22 0 2190 87 0 10 chr11 146442373 146442696 -2340776 + AluSp SINE Alu 1 320 0 234 91 0 0 chr11 146443509 146443542 -2339930 + (A)n Simple_repeat Simple_repeat 1 33 0 655 167 69 23 chr11 146443669 146443843 -2339629 - L1MA9 LINE L1 -86 6226 6045 2235 129 3 0 chr11 146443850 146444153 -2339319 - AluSx SINE Alu -8 304 1 2290 116 0 3 chr11 146444435 146444737 -2338735 + AluSc SINE Alu 1 301 -8 287 318 78 39 chr11 146444769 146444898 -2338574 - L2 LINE L2 -2 3270 3137 2775 206 53 112 chr11 146445551 146446049 -2337423 + L1MC5 LINE L1 6702 7228 -733 2260 119 3 3 chr11 146446049 146446360 -2337112 + AluSx SINE Alu 1 311 -1 2775 206 53 112 chr11 146446360 146446766 -2336706 + L1MC5 LINE L1 7228 7656 -305 2140 128 0 0 chr11 146446766 146447056 -2336416 - AluSg SINE Alu -20 290 1 2775 206 53 112 chr11 146447056 146447161 -2336311 + L1MC5 LINE L1 7656 7766 -195 1872 134 6 41 chr11 146447161 146447475 -2335997 + AluJo SINE Alu 1 303 -9 2775 206 53 112 chr11 146447475 146447543 -2335929 + L1MC5 LINE L1 7766 7836 -125 1454 199 14 18 chr11 146447543 146447829 -2335643 + AluJo SINE Alu 1 285 -27 2775 206 53 112 chr11 146447829 146448036 -2335436 + L1MC5 LINE L1 7836 7913 -48 463 68 0 0 chr11 146448123 146448182 -2335290 - AluSq SINE Alu -14 297 239 1497 110 0 15 chr11 146448184 146448384 -2335088 - AluSq SINE Alu -116 197 1 2466 81 0 0 chr11 146448522 146448820 -2334652 + AluSx SINE Alu 1 298 -14 624 243 147 5 chr11 146449222 146449440 -2334032 + MIR SINE MIR 14 262 0 184 267 67 17 chr11 146449490 146449550 -2333922 + L2 LINE L2 3208 3270 -2 225 0 0 0 chr11 146449889 146449914 -2333558 + (CTG)n Simple_repeat Simple_repeat 3 27 0 2358 91 3 0 chr11 146450134 146450431 -2333041 - AluSp SINE Alu -15 298 1 1887 128 6 78 chr11 146451678 146451825 -2331647 + AluJb SINE Alu 1 157 -155 2483 64 0 3 chr11 146451825 146452123 -2331349 + AluY SINE Alu 1 297 -14 2241 112 0 0 chr11 146452133 146452427 -2331045 + AluSx SINE Alu 1 294 -18 1887 128 6 78 chr11 146452427 146452603 -2330869 + AluJb SINE Alu 166 311 -1 226 288 25 25 chr11 146452923 146453003 -2330469 - Charlie4 DNA MER1_type 0 1961 1882 2265 90 21 3 chr11 146453370 146453658 -2329814 - AluSx SINE Alu -19 293 1 21 36 0 0 chr11 146455327 146455355 -2328117 + AT_rich Low_complexity Low_complexity 1 28 0 2004 103 46 0 chr11 146455721 146456003 -2327469 + AluSx SINE Alu 1 295 -17 2360 98 0 3 chr11 146457204 146457511 -2325961 + AluSq SINE Alu 1 306 -7 183 80 0 0 chr11 146457644 146457669 -2325803 + (A)n Simple_repeat Simple_repeat 1 25 0 2135 112 21 0 chr11 146458445 146458731 -2324741 + AluSx SINE Alu 1 292 -20 202 227 0 0 chr11 146459142 146459186 -2324286 - L2 LINE L2 -3 3310 3267 2226 94 7 0 chr11 146460167 146460453 -2323019 - AluSp SINE Alu -25 288 1 315 286 145 44 chr11 146460695 146460992 -2322480 - L2 LINE L2 -340 2974 2648 856 252 115 14 chr11 146460992 146461527 -2321945 + MLT2E LTR ERVL 2 624 -4 441 0 0 0 chr11 146463001 146463050 -2320422 + (GA)n Simple_repeat Simple_repeat 1 49 0 237 33 0 0 chr11 146465060 146465090 -2318382 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 612 198 77 55 chr11 146465107 146465289 -2318183 + L1MB7 LINE L1 5970 6155 -29 1830 85 152 50 chr11 146466280 146466563 -2316909 + AluSx SINE Alu 1 312 0 980 182 0 6 chr11 146467463 146467628 -2315844 - FRAM SINE Alu -15 161 1 1877 158 0 17 chr11 146467756 146468048 -2315424 - AluJb SINE Alu -24 288 2 375 181 14 0 chr11 146468519 146468591 -2314881 - MIR3 SINE MIR -21 187 115 182 191 24 24 chr11 146469437 146469479 -2313993 + MIR3 SINE MIR 141 182 -26 2341 46 7 7 chr11 146470892 146471222 -2312250 - AluY SINE Alu 0 330 1 1833 150 27 7 chr11 146472119 146472413 -2311059 - AluJb SINE Alu -11 301 2 820 214 35 52 chr11 146472635 146472925 -2310547 - L1MC5 LINE L1 -74 7887 7603 185 231 135 19 chr11 146472950 146473002 -2310470 - L2 LINE L2 -12 3260 3203 1339 261 52 42 chr11 146473150 146473729 -2309743 + L2 LINE L2 761 1345 -1969 475 284 46 76 chr11 146473758 146474061 -2309411 + L2 LINE L2 2566 2859 -455 794 209 23 18 chr11 146474974 146475172 -2308300 + L1ME3A LINE L1 5557 5755 -366 711 267 67 94 chr11 146475182 146475616 -2307856 + MER21B LTR ERV1 24 445 -418 27 92 0 0 chr11 146475620 146475696 -2307776 + AT_rich Low_complexity Low_complexity 1 76 0 2478 74 0 0 chr11 146475729 146476025 -2307447 + AluY SINE Alu 1 296 -15 597 287 55 15 chr11 146476026 146476228 -2307244 + MER21A LTR ERV1 578 787 -144 1694 208 57 5 chr11 146476238 146476627 -2306845 + L1ME3A LINE L1 5751 6159 -11 879 307 162 32 chr11 146477435 146477994 -2305478 + L2 LINE L2 2043 2528 -785 580 167 0 0 chr11 146477994 146478096 -2305376 + L1MA4 LINE L1 6196 6297 -3 879 307 162 32 chr11 146478096 146478594 -2304878 + L2 LINE L2 2528 3232 -81 231 242 47 39 chr11 146478686 146478814 -2304658 - L1ME LINE L1 -281 5840 5712 315 298 81 12 chr11 146478823 146478984 -2304488 + HsTC2 DNA Tc2 10 181 -1717 768 221 102 13 chr11 146479019 146479245 -2304227 + HsTC2 DNA Tc2 500 745 -1153 * 1162 225 108 45 chr11 146479241 146479667 -2303805 + HsTC2 DNA Tc2 1272 1900 0 977 93 22 0 chr11 146479918 146480057 -2303415 - L1PA10 LINE L1 -1 6167 6026 2043 157 14 6 chr11 146480926 146481271 -2302201 + MER47A DNA MER2_type 19 366 0 1556 129 0 0 chr11 146481345 146481554 -2301918 - AluSq SINE Alu -104 209 1 1189 110 23 6 chr11 146482762 146482935 -2300537 + MLT1B LTR MaLR 1 176 -214 925 156 0 0 chr11 146482936 146483071 -2300401 + AluJo SINE Alu 1 135 -177 2270 107 3 0 chr11 146483071 146483369 -2300103 + AluSc SINE Alu 1 299 -10 1264 145 13 31 chr11 146483387 146483615 -2299857 + MLT1B LTR MaLR 162 385 -5 2277 38 41 24 chr11 146483671 146483964 -2299508 + AluY SINE Alu 1 298 -13 229 152 43 0 chr11 146484738 146484784 -2298688 + L1MB8 LINE L1 6125 6172 -6 2005 118 3 47 chr11 146485320 146485641 -2297831 + AluSx SINE Alu 3 309 -3 241 341 45 22 chr11 146486181 146486404 -2297068 + MIR SINE MIR 3 230 -32 1092 218 99 29 chr11 146486898 146487283 -2296189 + LTR52 LTR ERVL 7 418 -3 204 287 38 34 chr11 146487988 146488145 -2295327 - L3 LINE CR1 -237 1340 1145 712 321 25 32 chr11 146488166 146488481 -2294991 - L3 LINE CR1 -563 1014 702 527 280 156 9 chr11 146488566 146488777 -2294695 + MIR SINE MIR 21 262 0 2246 85 0 11 chr11 146489020 146489301 -2294171 + AluSq SINE Alu 1 278 -35 1982 144 17 3 chr11 146489325 146489623 -2293849 + AluJb SINE Alu 1 302 -10 348 219 101 71 chr11 146491628 146491797 -2291675 + L1ME LINE L1 5422 5595 -526 288 111 22 0 chr11 146491854 146491899 -2291573 - L1MC5 LINE L1 -96 7865 7820 1524 152 8 19 chr11 146491933 146492190 -2291282 - AluJb SINE Alu -58 254 1 456 143 76 29 chr11 146492190 146492295 -2291177 - L1MC5 LINE L1 -128 7833 7724 2256 110 0 13 chr11 146492349 146492648 -2290824 - AluSq SINE Alu -18 295 1 2207 88 3 0 chr11 146492662 146492945 -2290527 - AluSx SINE Alu -9 303 20 238 250 179 65 chr11 146493097 146493265 -2290207 + L1ME LINE L1 5602 5788 -333 182 62 31 0 chr11 146493267 146493299 -2290173 + (TA)n Simple_repeat Simple_repeat 2 34 0 28 0 0 0 chr11 146493373 146493401 -2290071 + AT_rich Low_complexity Low_complexity 1 28 0 2266 114 0 7 chr11 146493628 146493934 -2289538 - AluSx SINE Alu -8 304 1 1822 164 49 0 chr11 146494041 146494328 -2289144 - AluJo SINE Alu -11 301 1 22 0 0 0 chr11 146495490 146495512 -2287960 + AT_rich Low_complexity Low_complexity 1 22 0 2081 121 13 0 chr11 146495655 146495961 -2287511 + AluSx SINE Alu 1 310 -2 2218 76 0 3 chr11 146496697 146496986 -2286486 - AluSg1 SINE Alu -21 288 1 235 302 104 10 chr11 146496986 146497082 -2286390 + L2 LINE L2 3209 3313 0 2140 94 0 7 chr11 146497729 146498035 -2285437 + AluSq SINE Alu 1 304 0 203 136 0 68 chr11 146498076 146498120 -2285352 + L2 LINE L2 3232 3272 0 1027 177 111 33 chr11 146499146 146499417 -2284055 - AluJo SINE Alu -10 302 11 22 35 0 0 chr11 146499460 146499489 -2283983 + AT_rich Low_complexity Low_complexity 1 29 0 266 140 55 0 chr11 146499493 146499569 -2283903 + L1MC4 LINE L1 7627 7805 -97 268 309 106 53 chr11 146499641 146499906 -2283566 + MARNA DNA Mariner 294 572 -14 21 36 0 0 chr11 146500490 146500518 -2282954 + AT_rich Low_complexity Low_complexity 1 28 0 274 186 0 0 chr11 146500611 146500654 -2282818 + Alu SINE Alu 1 43 -260 2111 111 0 3 chr11 146500678 146500975 -2282497 - AluSx SINE Alu -16 296 1 675 174 0 0 chr11 146500975 146501084 -2282388 + AluSq/x SINE Alu 27 135 -177 21 0 0 0 chr11 146501084 146501105 -2282367 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr11 146501154 146501186 -2282286 + AT_rich Low_complexity Low_complexity 1 32 0 478 244 43 55 chr11 146501919 146502083 -2281389 + L1ME2 LINE L1 5994 6155 -9 286 158 0 35 chr11 146502154 146502211 -2281261 + L1MB7 LINE L1 6130 6184 0 1788 178 0 0 chr11 146502235 146502544 -2280928 + AluJb SINE Alu 1 309 -3 601 159 37 0 chr11 146502630 146502737 -2280735 + FLAM_A SINE Alu 1 111 -31 845 19 10 0 chr11 146502741 146502844 -2280628 + (GAGAA)n Simple_repeat Simple_repeat 4 107 0 2472 211 35 33 chr11 146502875 146503501 -2279971 - L1MD3 LINE L1 0 8040 7435 241 263 38 25 chr11 146503568 146503648 -2279824 - L2 LINE L2 -46 3226 3146 276 286 125 0 chr11 146503937 146504049 -2279423 - L1MC4a LINE L1 -1882 5926 5801 212 259 241 9 chr11 146504232 146504340 -2279132 + MIR SINE MIR 129 261 -1 658 127 0 75 chr11 146504413 146504662 -2278810 + AluSx SINE Alu 2 312 0 363 204 7 139 chr11 146505053 146505190 -2278282 - L2 LINE L2 -5 3308 3190 318 300 47 63 chr11 146505204 146505350 -2278122 + MIR SINE MIR 1 146 -116 2092 102 0 0 chr11 146505350 146505657 -2277815 + AluSq SINE Alu 1 307 0 318 300 47 63 chr11 146505657 146505699 -2277773 + MIR SINE MIR 146 187 -75 1361 236 191 14 chr11 146505711 146506131 -2277341 + HsTC2 DNA Tc2 4 497 -1401 1839 200 30 43 chr11 146506142 146506497 -2276975 + HsTC2 DNA Tc2 1271 1796 -102 2296 78 3 10 chr11 146506497 146506805 -2276667 + AluSg SINE Alu 1 306 -4 1839 200 30 43 chr11 146506805 146506909 -2276563 + HsTC2 DNA Tc2 1796 1900 2 237 294 118 0 chr11 146507006 146507074 -2276398 - L2 LINE L2 -56 3216 3141 21 0 0 0 chr11 146508543 146508564 -2274908 + AT_rich Low_complexity Low_complexity 1 21 0 405 256 74 25 chr11 146508760 146508881 -2274591 + MIR SINE MIR 31 157 -105 2047 111 0 41 chr11 146508900 146509216 -2274256 + AluSx SINE Alu 1 303 -9 402 167 0 0 chr11 146509576 146509642 -2273830 + L1MB3 LINE L1 5810 5875 -308 549 306 46 15 chr11 146509644 146509840 -2273632 - MIR SINE MIR -59 203 2 2043 117 7 3 chr11 146509934 146510234 -2273238 - AluSq SINE Alu -12 301 1 1619 105 4 9 chr11 146510333 146510561 -2272911 - pTR5 LTR ERV1 -2040 398 172 280 281 31 0 chr11 146510564 146510660 -2272812 - LTR30 LTR ERV1 -80 642 544 5239 126 67 76 chr11 146510660 146511775 -2271697 - pTR5 LTR ERV1 -413 2025 742 731 296 19 0 chr11 146513400 146513616 -2269856 + MIR SINE MIR 33 252 -10 207 167 0 0 chr11 146513690 146513732 -2269740 + A-rich Low_complexity Low_complexity 3 44 0 2124 176 25 31 chr11 146514154 146514532 -2268940 + L1MB3 LINE L1 5741 6117 -66 2160 92 10 3 chr11 146514532 146514826 -2268646 + AluSq SINE Alu 1 296 -17 2124 176 25 31 chr11 146514826 146514891 -2268581 + L1MB3 LINE L1 6117 6181 -2 204 241 37 0 chr11 146515197 146515251 -2268221 + L2 LINE L2 3240 3295 -18 394 252 70 42 chr11 146515794 146515937 -2267535 - MIR SINE MIR -4 258 112 387 0 0 0 chr11 146516643 146516686 -2266786 + (CA)n Simple_repeat Simple_repeat 2 44 0 2097 89 0 0 chr11 146516686 146516967 -2266505 - AluSc SINE Alu -28 281 1 1714 151 0 25 chr11 146517058 146517376 -2266096 + AluJb SINE Alu 1 310 -2 1643 207 29 3 chr11 146519349 146519692 -2263780 + L1MB7 LINE L1 5404 5755 -423 963 137 88 68 chr11 146519760 146519965 -2263507 + MER1B DNA MER1_type 128 336 -3 1392 204 37 58 chr11 146519968 146520247 -2263225 + L1MB7 LINE L1 5750 6020 -164 2257 94 3 0 chr11 146520247 146520554 -2262918 - AluSq SINE Alu -3 310 3 1392 204 37 58 chr11 146520554 146520651 -2262821 + L1MB7 LINE L1 6020 6118 -66 2133 114 0 0 chr11 146520999 146521289 -2262183 + AluSq SINE Alu 1 290 -23 21 0 0 0 chr11 146521290 146521311 -2262161 + AT_rich Low_complexity Low_complexity 1 21 0 1676 169 3 7 chr11 146521361 146521651 -2261821 + AluJb SINE Alu 1 289 -23 219 114 0 0 chr11 146521651 146521686 -2261786 + (TG)n Simple_repeat Simple_repeat 2 36 0 1151 106 0 6 chr11 146521691 146521851 -2261621 - AluSq SINE Alu -55 258 100 369 344 33 27 chr11 146521863 146522046 -2261426 + L1ME4a LINE L1 5933 6116 -5 1606 160 3 33 chr11 146522055 146522355 -2261117 + AluJb SINE Alu 1 291 -21 565 105 12 12 chr11 146522367 146522453 -2261019 - AluSg/x SINE Alu -15 295 210 1517 175 18 4 chr11 146522554 146522834 -2260638 + AluJb SINE Alu 6 289 -23 219 114 0 0 chr11 146522834 146522869 -2260603 + (TG)n Simple_repeat Simple_repeat 2 36 0 1029 101 0 25 chr11 146522874 146523033 -2260439 - AluSq SINE Alu -55 258 104 324 292 44 36 chr11 146523118 146523255 -2260217 + L1ME4a LINE L1 5979 6116 -5 1430 159 4 37 chr11 146523323 146523594 -2259878 + AluJb SINE Alu 30 291 -21 2042 125 0 3 chr11 146523606 146523903 -2259569 - AluSx SINE Alu -16 296 1 2323 70 0 13 chr11 146523911 146524223 -2259249 - AluY SINE Alu -3 308 1 214 310 159 45 chr11 146524545 146525581 -2257891 + L2 LINE L2 1178 3065 -248 303 269 26 13 chr11 146525877 146525955 -2257517 - L1MC4 LINE L1 -1327 6715 6637 1812 147 37 0 chr11 146526135 146526434 -2257038 + AluJb SINE Alu 1 310 -2 276 30 0 0 chr11 146526434 146526467 -2257005 + (TA)n Simple_repeat Simple_repeat 1 33 0 1503 139 66 18 chr11 146527022 146527295 -2256177 - AluSx SINE Alu -21 291 6 250 304 79 75 chr11 146527320 146527560 -2255912 + MIR SINE MIR 21 261 -1 2932 178 10 69 chr11 146527998 146528344 -2255128 + L1MB8 LINE L1 5482 5770 -408 2126 89 7 3 chr11 146528344 146528637 -2254835 + AluY SINE Alu 2 295 -16 2932 178 10 69 chr11 146528637 146528974 -2254498 + L1MB8 LINE L1 5770 6125 -53 945 118 0 0 chr11 146529021 146529156 -2254316 - AluJb SINE Alu -177 135 1 303 211 0 0 chr11 146529162 146529230 -2254242 + L1MB8 LINE L1 6115 6184 0 2402 58 0 0 chr11 146529262 146529553 -2253919 - AluY SINE Alu -20 291 1 745 210 19 6 chr11 146529789 146529946 -2253526 + FRAM SINE Alu 6 164 -12 1818 128 3 73 chr11 146530545 146530691 -2252781 + AluSx SINE Alu 1 113 -199 2252 81 0 3 chr11 146530691 146530987 -2252485 + AluY SINE Alu 5 299 -12 1818 128 3 73 chr11 146530987 146531169 -2252303 + AluSx SINE Alu 113 306 -6 798 113 0 24 chr11 146531270 146531394 -2252078 - FLAM_C SINE Alu -20 123 3 1832 90 57 36 chr11 146532025 146532160 -2251312 + AluSx SINE Alu 1 132 -180 2175 94 3 0 chr11 146532160 146532458 -2251014 + AluSx SINE Alu 1 299 -13 1832 90 57 36 chr11 146532458 146532623 -2250849 + AluSx SINE Alu 132 307 -5 312 271 0 31 chr11 146532919 146533015 -2250457 - MIR SINE MIR 0 262 170 192 346 0 0 chr11 146533369 146533421 -2250051 - L2 LINE L2 -16 3297 3246 513 253 91 17 chr11 146533586 146533987 -2249485 - L1MC/D LINE L1 -694 5665 5023 623 253 129 55 chr11 146534012 146534117 -2249355 - L1MC/D LINE L1 -1283 4863 4767 2376 62 0 0 chr11 146534117 146534407 -2249065 - AluY SINE Alu -21 290 1 623 253 129 55 chr11 146534407 146534681 -2248791 - L1MC/D LINE L1 -1379 4767 4456 2071 90 30 20 chr11 146534812 146535112 -2248360 + AluSg SINE Alu 1 303 -7 750 153 0 16 chr11 146535123 146535247 -2248225 + FLAM_A SINE Alu 8 129 -13 2276 87 0 7 chr11 146535268 146535577 -2247895 - AluY SINE Alu -4 307 1 2191 112 0 0 chr11 146536288 146536600 -2246872 + AluSx SINE Alu 1 312 0 1183 187 180 0 chr11 146536939 146537228 -2246244 + MER58B DNA MER1_type 1 341 0 278 219 102 139 chr11 146537484 146537671 -2245801 - MIR SINE MIR -78 184 5 1815 166 0 3 chr11 146537821 146538129 -2245343 + AluJo SINE Alu 1 307 -5 1007 144 154 25 chr11 146538628 146538913 -2244559 - MER33 DNA MER1_type -2 322 1 1812 158 0 3 chr11 146539444 146539747 -2243725 - AluJb SINE Alu -10 302 1 308 267 127 18 chr11 146540558 146540667 -2242805 + L1ME4a LINE L1 5939 6073 -48 2362 67 3 0 chr11 146540667 146540967 -2242505 - AluSq SINE Alu -12 301 1 308 267 127 18 chr11 146540967 146541022 -2242450 + L1ME4a LINE L1 6073 6121 0 251 155 172 0 chr11 146541371 146541429 -2242043 + L1MB5 LINE L1 6101 6168 -6 1763 129 11 0 chr11 146541449 146541728 -2241744 + AluJb SINE Alu 1 282 -30 22 0 0 0 chr11 146542575 146542597 -2240875 + GC_rich Low_complexity Low_complexity 1 22 0 212 243 0 153 chr11 146544146 146544257 -2239215 + MIR SINE MIR 153 246 -16 2004 104 4 0 chr11 146544389 146544694 -2238778 - AluSx SINE Alu 0 311 6 1807 159 20 0 chr11 146544778 146545079 -2238393 + AluJo SINE Alu 5 311 -1 259 246 82 62 chr11 146545563 146545681 -2237791 - MER5A DNA MER1_type -5 184 43 872 287 104 34 chr11 146545718 146546073 -2237399 - L2 LINE L2 -8 3305 2926 331 255 0 51 chr11 146546106 146546204 -2237268 - L2 LINE L2 0 3313 3221 189 279 19 163 chr11 146546189 146546404 -2237068 - L2 LINE L2 -345 2969 2786 * 1665 304 75 54 chr11 146546489 146547413 -2236059 - L2 LINE L2 -561 2753 1811 525 125 0 0 chr11 146547468 146547548 -2235924 + AluJ/FRAM SINE Alu 219 298 -14 342 133 0 0 chr11 146547552 146547612 -2235860 + L1MC4 LINE L1 7572 7631 -411 2182 99 38 7 chr11 146547618 146547911 -2235561 + AluSx SINE Alu 1 302 -10 1076 260 52 14 chr11 146547911 146548276 -2235196 + MLT1C LTR MaLR 86 464 -3 730 146 36 29 chr11 146548453 146548590 -2234882 + FLAM_C SINE Alu 6 143 0 1110 185 0 5 chr11 146548612 146548796 -2234676 + FRAM SINE Alu 1 175 -1 383 200 0 11 chr11 146548807 146548897 -2234575 + GA-rich Low_complexity Low_complexity 4 92 0 1405 149 104 31 chr11 146549414 146549702 -2233770 + AluJb SINE Alu 1 309 -3 1840 177 3 0 chr11 146550209 146550514 -2232958 + AluSx SINE Alu 1 306 -6 381 162 0 0 chr11 146550520 146550588 -2232884 + GA-rich Low_complexity Low_complexity 3 70 0 364 294 88 41 chr11 146550601 146550635 -2232837 + L1M4 LINE L1 3999 4030 -2116 2397 69 0 3 chr11 146550635 146550938 -2232534 - AluY SINE Alu -9 302 1 364 294 88 41 chr11 146550938 146551097 -2232375 + L1M4 LINE L1 4030 4201 -1945 2116 102 7 33 chr11 146551161 146551464 -2232008 + AluSp SINE Alu 1 295 -18 241 218 0 0 chr11 146551739 146551794 -2231678 + L1MEc LINE L1 1633 1687 -4709 570 179 24 0 chr11 146551900 146552023 -2231449 + L1MB3 LINE L1 6053 6178 -5 2216 107 0 7 chr11 146552031 146552341 -2231131 - AluSx SINE Alu -4 308 1 2205 108 0 17 chr11 146552345 146552642 -2230830 - AluSg SINE Alu -18 292 1 2052 128 0 10 chr11 146552682 146552971 -2230501 + AluSx SINE Alu 5 290 -22 897 217 0 0 chr11 146553373 146553530 -2229942 + FAM SINE Alu 2 158 -17 26 50 0 0 chr11 146553535 146553575 -2229897 + AT_rich Low_complexity Low_complexity 1 40 0 1843 161 3 3 chr11 146553577 146553863 -2229609 + AluSx SINE Alu 1 286 -26 2094 94 33 0 chr11 146553873 146554178 -2229294 + AluSx SINE Alu 1 314 0 318 273 8 39 chr11 146554183 146554311 -2229161 + L1MEc LINE L1 2208 2331 -3884 232 150 0 0 chr11 146554311 146554351 -2229121 + MER4E LTR ERV1 667 706 -73 22 35 0 0 chr11 146554351 146554380 -2229092 + AT_rich Low_complexity Low_complexity 1 29 0 389 239 62 23 chr11 146554390 146554566 -2228906 + L1MEc LINE L1 2323 2505 -3710 421 249 23 57 chr11 146554592 146554769 -2228703 + L1ME1 LINE L1 12 182 -6214 490 247 88 35 chr11 146554894 146555064 -2228408 + L1ME1 LINE L1 258 436 -5960 2362 207 26 66 chr11 146555125 146555230 -2228242 + L1ME1 LINE L1 5402 5510 -725 2119 121 10 0 chr11 146555230 146555527 -2227945 + AluSg SINE Alu 1 300 -10 2362 207 26 66 chr11 146555527 146555800 -2227672 + L1ME1 LINE L1 5510 5792 -443 1715 179 14 4 chr11 146555800 146556079 -2227393 + AluJb SINE Alu 14 295 -17 2362 207 26 66 chr11 146556079 146556161 -2227311 + L1ME1 LINE L1 5792 5876 -359 2022 120 49 63 chr11 146556161 146556528 -2226944 + THE1B LTR MaLR 1 362 -2 2362 207 26 66 chr11 146556528 146556795 -2226677 + L1ME1 LINE L1 5876 6102 -133 2268 106 0 0 chr11 146557029 146557332 -2226140 + AluYa5 SINE Alu 1 303 -8 1639 181 23 23 chr11 146557576 146557879 -2225593 - AluJb SINE Alu -9 303 1 768 167 8 0 chr11 146557879 146557999 -2225473 - AluJo/FLAM SINE Alu -185 127 7 425 308 102 37 chr11 146558003 146558328 -2225144 + L1MC4a LINE L1 5261 5606 -568 347 227 27 0 chr11 146558341 146558416 -2225056 - MER2 DNA MER2_type 0 345 269 21 57 0 0 chr11 146558418 146558453 -2225019 + AT_rich Low_complexity Low_complexity 1 35 0 238 35 0 0 chr11 146558478 146558507 -2224965 + THE1B LTR MaLR 1 29 -335 2356 109 0 0 chr11 146558507 146558809 -2224663 + AluSx SINE Alu 1 302 -10 326 23 0 0 chr11 146558810 146558853 -2224619 - MER2 DNA MER2_type -138 207 165 482 171 320 0 chr11 146558888 146559063 -2224409 - MLT2C1 LTR ERVL -165 232 2 942 129 12 18 chr11 146559071 146559234 -2224238 - MER2 DNA MER2_type -182 163 2 228 305 10 61 chr11 146559390 146559521 -2223951 + L1MC4a LINE L1 5776 5912 -1896 823 190 114 117 chr11 146559521 146559746 -2223726 - MLT2C1 LTR ERVL -3 394 169 2283 48 48 7 chr11 146559746 146560038 -2223434 - AluY SINE Alu -6 305 2 823 190 114 117 chr11 146560038 146560207 -2223265 - MLT2C1 LTR ERVL -228 169 1 228 305 10 61 chr11 146560207 146560253 -2223219 + L1MC4a LINE L1 5912 5945 -1863 213 39 0 0 chr11 146560253 146560279 -2223193 + (TG)n Simple_repeat Simple_repeat 1 26 0 228 305 10 61 chr11 146560279 146560297 -2223175 + L1MC4a LINE L1 5945 5962 -1846 21 0 0 0 chr11 146560443 146560464 -2223008 + AT_rich Low_complexity Low_complexity 1 21 0 1303 251 39 37 chr11 146560660 146561119 -2222353 - MLT1C LTR MaLR -1 466 7 784 121 0 57 chr11 146561192 146561316 -2222156 + AluJo SINE Alu 2 118 -184 2232 73 7 7 chr11 146561348 146561648 -2221824 + AluY SINE Alu 1 300 -11 611 193 0 18 chr11 146561694 146561803 -2221669 + AluJo SINE Alu 1 107 -205 3311 117 143 122 chr11 146561803 146563148 -2220324 + pTR5 LTR ERV1 748 2438 0 887 217 16 5 chr11 146563148 146563332 -2220140 + AluJo SINE Alu 97 282 -30 349 330 20 0 chr11 146563342 146563442 -2220030 + L1M4 LINE L1 4113 4214 -1932 2314 70 7 3 chr11 146564214 146564512 -2218960 - AluY SINE Alu -12 299 1 2171 114 0 7 chr11 146564982 146565281 -2218191 - AluSx SINE Alu -15 297 1 2282 109 0 0 chr11 146565458 146565761 -2217711 - AluSx SINE Alu -9 303 1 2329 102 0 0 chr11 146566162 146566455 -2217017 - AluSg SINE Alu -17 293 1 2137 87 25 0 chr11 146566756 146567033 -2216439 + AluSc SINE Alu 14 297 -12 1906 160 3 0 chr11 146567050 146567350 -2216122 + AluJb SINE Alu 1 301 -11 1522 157 0 79 chr11 146567418 146567723 -2215749 - AluJo SINE Alu -17 295 15 494 259 141 6 chr11 146567742 146567902 -2215570 - MER5A DNA MER1_type -1 188 4 2276 106 0 10 chr11 146568050 146568353 -2215119 - AluSg SINE Alu -10 300 1 2509 71 0 3 chr11 146568589 146568897 -2214575 - AluY SINE Alu -4 307 1 2598 64 0 3 chr11 146568950 146569262 -2214210 - AluY SINE Alu 0 311 1 901 103 0 0 chr11 146569874 146569990 -2213482 + AluSg/x SINE Alu 188 303 -9 2015 119 3 30 chr11 146570065 146570367 -2213105 - AluSx SINE Alu -18 294 1 2442 97 0 0 chr11 146570382 146570692 -2212780 - AluSx SINE Alu -2 310 1 257 182 0 61 chr11 146570692 146570758 -2212714 + MIR SINE MIR 103 164 -98 299 232 0 0 chr11 146570808 146570877 -2212595 + MLT1J LTR MaLR 112 180 -331 332 270 54 18 chr11 146570908 146571019 -2212453 + MLT1J LTR MaLR 257 371 -140 216 111 0 0 chr11 146571236 146571272 -2212200 + (TTA)n Simple_repeat Simple_repeat 2 37 0 1416 169 29 0 chr11 146571670 146571943 -2211529 + L1PB1 LINE L1 1 281 -6582 * 9111 195 19 28 chr11 146571935 146572928 -2210544 + L1PB1 LINE L1 3490 4491 -2376 2168 99 0 7 chr11 146572928 146573221 -2210251 + AluSg SINE Alu 1 291 -19 9111 195 19 28 chr11 146573221 146575420 -2208052 + L1PB1 LINE L1 4491 6650 -217 1055 116 12 0 chr11 146575430 146575594 -2207878 + L1PB1 LINE L1 6702 6867 0 22 94 0 0 chr11 146575632 146575696 -2207776 + AT_rich Low_complexity Low_complexity 1 64 0 1570 159 37 0 chr11 146576224 146576520 -2206952 - MER2 DNA MER2_type -23 322 16 520 267 18 12 chr11 146578581 146578746 -2204726 - MER117 DNA MER1_type -31 166 1 23 0 0 0 chr11 146578839 146578862 -2204610 + AT_rich Low_complexity Low_complexity 1 23 0 207 276 92 46 chr11 146579116 146579203 -2204269 + MER5B DNA MER1_type 14 104 -74 339 25 0 0 chr11 146579230 146579270 -2204202 + (TG)n Simple_repeat Simple_repeat 2 41 0 281 338 0 0 chr11 146580448 146580516 -2202956 - L2 LINE L2 0 3313 3246 219 150 0 0 chr11 146580611 146580651 -2202821 + (T)n Simple_repeat Simple_repeat 1 40 0 322 89 0 127 chr11 146580652 146580731 -2202741 - L1PA10 LINE L1 -1 6167 6099 297 314 12 0 chr11 146581666 146581752 -2201720 - MIR SINE MIR -108 154 68 2633 294 68 20 chr11 146581773 146582705 -2200767 + L2 LINE L2 1388 2363 -951 197 329 71 0 chr11 146582719 146582804 -2200668 + L2 LINE L2 3223 3313 0 330 289 122 37 chr11 146583005 146583275 -2200197 + L2 LINE L2 3021 3313 0 523 203 72 43 chr11 146583539 146583746 -2199726 - MER106B DNA MER1_type -4 1055 20 203 254 146 55 chr11 146584245 146584355 -2199117 - MIR SINE MIR -70 138 19 250 286 31 31 chr11 146585170 146585268 -2198204 + L2 LINE L2 2475 2572 -742 803 186 208 50 chr11 146585311 146585590 -2197882 + MER33 DNA MER1_type 1 323 -1 511 302 196 23 chr11 146585591 146586038 -2197434 + L2 LINE L2 2626 3186 -127 351 0 0 0 chr11 146586038 146586077 -2197395 + (TG)n Simple_repeat Simple_repeat 2 40 0 511 302 196 23 chr11 146586077 146586220 -2197252 + L2 LINE L2 3186 3303 -10 194 362 90 37 chr11 146586235 146586423 -2197049 + L2 LINE L2 2779 2976 -338 294 336 152 9 chr11 146587061 146587272 -2196200 + MIR SINE MIR 1 241 -21 326 284 29 10 chr11 146587495 146587597 -2195875 - MIR3 SINE MIR -22 186 83 332 331 28 11 chr11 146588649 146588830 -2194642 + LTR16B LTR ERVL 134 317 -147 213 275 69 92 chr11 146589875 146590006 -2193466 - MIR SINE MIR -12 250 123 277 355 134 12 chr11 146590463 146590635 -2192837 + MIR SINE MIR 59 251 -11 188 269 13 64 chr11 146591037 146591115 -2192357 - MIR SINE MIR -108 154 81 240 35 0 0 chr11 146591158 146591187 -2192285 + (CA)n Simple_repeat Simple_repeat 1 29 0 242 56 28 0 chr11 146591200 146591236 -2192236 + (TCTA)n Simple_repeat Simple_repeat 1 37 0 330 294 28 56 chr11 146593242 146593456 -2190016 + MLT1K LTR MaLR 381 588 0 422 351 50 10 chr11 146594121 146594323 -2189149 + MIR SINE MIR 3 212 -50 241 399 76 0 chr11 146594396 146594554 -2188918 - MIR3 SINE MIR -17 191 22 992 173 0 0 chr11 146595769 146595925 -2187547 - FRAM SINE Alu -20 156 1 255 267 22 11 chr11 146596256 146596346 -2187126 + MER117 DNA MER1_type 4 94 -103 2487 58 0 0 chr11 146596510 146596805 -2186667 + AluY SINE Alu 1 295 -16 241 302 16 0 chr11 146596970 146597033 -2186439 + L2 LINE L2 2989 3052 -261 524 310 7 0 chr11 146597444 146597599 -2185873 - MIR SINE MIR -23 239 84 1571 174 0 82 chr11 146597990 146598294 -2185178 + AluJo SINE Alu 9 287 -25 683 296 26 55 chr11 146598993 146599617 -2183855 - L1MEd LINE L1 -4970 1149 544 192 286 0 0 chr11 146599914 146599963 -2183509 - L2 LINE L2 -14 3299 3251 392 274 38 9 chr11 146599963 146600069 -2183403 + MER81 DNA DNA 1 109 -5 270 345 143 37 chr11 146600352 146600575 -2182897 - L2 LINE L2 -24 3289 3014 2637 48 0 0 chr11 146600575 146600886 -2182586 + AluY SINE Alu 1 311 0 270 345 143 37 chr11 146600886 146601013 -2182459 - L2 LINE L2 -299 3014 2902 301 333 94 10 chr11 146601044 146601245 -2182227 + L2 LINE L2 2867 3084 -229 455 156 144 0 chr11 146601411 146601501 -2181971 - MER3 DNA MER1_type -104 105 3 273 306 145 16 chr11 146601501 146601687 -2181785 + L2 LINE L2 3099 3308 -5 189 281 0 47 chr11 146602487 146602551 -2180921 - L2 LINE L2 -540 2774 2714 414 0 0 0 chr11 146602675 146602721 -2180751 + (TAA)n Simple_repeat Simple_repeat 2 47 0 482 388 100 14 chr11 146602723 146603314 -2180158 - L2 LINE L2 -462 2852 2211 443 351 29 23 chr11 146603382 146603553 -2179919 - MIR3 SINE MIR -21 187 16 22 0 0 0 chr11 146603553 146603575 -2179897 + AT_rich Low_complexity Low_complexity 1 22 0 34 0 0 0 chr11 146603951 146603985 -2179487 + AT_rich Low_complexity Low_complexity 1 34 0 201 39 0 0 chr11 146604126 146604152 -2179320 + (CA)n Simple_repeat Simple_repeat 2 27 0 921 319 73 28 chr11 146604338 146604802 -2178670 + L2 LINE L2 2829 3313 0 331 292 5 104 chr11 146604998 146605190 -2178282 - MIR SINE MIR -11 251 79 30 45 0 0 chr11 146605682 146605726 -2177746 + AT_rich Low_complexity Low_complexity 1 44 0 32 67 0 0 chr11 146605920 146605980 -2177492 + AT_rich Low_complexity Low_complexity 1 60 0 543 291 78 35 chr11 146606508 146606738 -2176734 + MIR SINE MIR 2 241 -21 30 0 0 0 chr11 146606744 146606774 -2176698 + AT_rich Low_complexity Low_complexity 1 30 0 210 147 0 0 chr11 146606847 146606881 -2176591 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 392 289 78 56 chr11 146607564 146607744 -2175728 + MIR3 SINE MIR 19 202 -6 623 279 85 4 chr11 146608121 146608379 -2175093 + L1M3d LINE L1 3 281 -5610 1453 236 82 11 chr11 146608398 146609007 -2174465 + L1M3d LINE L1 2471 3122 -2848 * 3703 168 15 64 chr11 146609004 146609803 -2173669 - L1MCa LINE L1 -5643 783 24 292 288 63 37 chr11 146609823 146610202 -2173270 + L1ME4a LINE L1 5725 6113 -8 24 0 0 0 chr11 146610608 146610632 -2172840 + AT_rich Low_complexity Low_complexity 1 24 0 666 273 61 15 chr11 146610638 146610836 -2172636 - MIR SINE MIR 0 262 56 287 376 41 48 chr11 146611277 146611548 -2171924 + L2 LINE L2 2917 3185 -87 355 339 73 12 chr11 146612830 146612995 -2170477 - MIR3 SINE MIR -1 207 33 244 378 159 0 chr11 146613914 146614065 -2169407 - L2 LINE L2 -288 3025 2851 7435 40 0 0 chr11 146615360 146616465 -2167007 - L1PA5 LINE L1 -1 6153 5047 326 349 8 8 chr11 146616860 146616986 -2166486 + MER5A DNA MER1_type 1 126 -63 1441 274 49 20 chr11 146617350 146617839 -2165633 - MLT1D LTR MaLR -2 503 1 414 0 0 0 chr11 146618590 146618636 -2164836 + (CA)n Simple_repeat Simple_repeat 1 46 0 274 333 0 0 chr11 146619184 146619274 -2164198 - Charlie8 DNA MER1_type -2141 276 187 404 236 72 65 chr11 146619911 146620258 -2163214 + L1MEc LINE L1 1518 1914 -4807 * 618 221 7 0 chr11 146620257 146620393 -2163079 + L1P3 LINE L1 2 138 -5737 6412 64 11 46 chr11 146620393 146621466 -2162006 + L1PA7 LINE L1 5103 6146 -8 2937 133 39 55 chr11 146621476 146622114 -2161358 + L1PA8 LINE L1 3167 3794 -2352 2693 78 0 15 chr11 146622110 146622665 -2160807 + L1PA8 LINE L1 5084 5632 -499 * 3594 98 0 2 chr11 146622765 146623285 -2160187 + L1PA8 LINE L1 5645 6163 -9 1192 185 18 60 chr11 146623305 146623355 -2160117 - L1PA15-16 LINE L1 -6427 422 371 2858 16 0 0 chr11 146623355 146623673 -2159799 + AluYb8 SINE Alu 1 318 0 1192 185 18 60 chr11 146623673 146624001 -2159471 - L1PA15-16 LINE L1 -6478 371 1 692 228 82 0 chr11 146624155 146624326 -2159146 + MER58C DNA MER1_type 1 185 -30 280 255 32 11 chr11 146624412 146624506 -2158966 + MLT1K LTR MaLR 492 587 -1 274 311 58 10 chr11 146625178 146625281 -2158191 - L2 LINE L2 -1 3312 3205 500 192 0 8 chr11 146625753 146625873 -2157599 + GA-rich Low_complexity Low_complexity 2 120 0 747 93 0 0 chr11 146625873 146625980 -2157492 - L1PA8A LINE L1 -382 5749 5643 255 31 0 0 chr11 146625989 146626021 -2157451 + (GGGA)n Simple_repeat Simple_repeat 2 33 0 797 89 0 0 chr11 146626640 146626752 -2156720 + L1PA5 LINE L1 6035 6146 -8 6272 90 1 17 chr11 146626943 146627707 -2155765 - L1PA8 LINE L1 -13 6159 5385 207 0 0 0 chr11 146627707 146627730 -2155742 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6272 90 1 17 chr11 146627730 146627760 -2155712 - L1PA8 LINE L1 -787 5385 5356 2234 113 3 0 chr11 146627760 146628052 -2155420 - AluSg SINE Alu -17 293 1 6272 90 1 17 chr11 146628052 146628738 -2154734 - L1PA8 LINE L1 -816 5356 4681 3936 207 9 6 chr11 146628739 146629664 -2153808 + L1PA16 LINE L1 423 1239 -5610 * 7329 233 37 37 chr11 146629661 146632395 -2151077 + L1PA16 LINE L1 2700 5434 -1415 1856 191 80 0 chr11 146632395 146632782 -2150690 - MSTB LTR MaLR 0 426 9 4867 191 9 8 chr11 146632793 146634223 -2149249 + L1PA16 LINE L1 5433 6861 -8 * 6167 168 65 41 chr11 146634206 146635213 -2148259 + L1PBa LINE L1 121 1103 -5760 231 114 0 0 chr11 146635213 146635248 -2148224 + (CAA)n Simple_repeat Simple_repeat 2 36 0 6167 168 65 41 chr11 146635248 146637908 -2145564 + L1PBa LINE L1 1103 2971 -3892 2246 92 30 0 chr11 146638263 146638558 -2144914 + AluSg SINE Alu 3 306 -4 829 212 82 42 chr11 146638579 146638885 -2144587 - L1MC4 LINE L1 -37 8005 7688 2026 135 7 0 chr11 146638899 146639212 -2144260 - AluSg SINE Alu 0 315 1 1173 154 34 26 chr11 146640837 146641070 -2142402 - Tigger3(Golem) DNA MER2_type 0 3029 2795 1543 271 93 33 chr11 146641182 146641773 -2141699 + L1ME LINE L1 3884 4438 -1708 2126 120 0 0 chr11 146641773 146642092 -2141380 + AluSx SINE Alu 1 319 0 1543 271 93 33 chr11 146642092 146642584 -2140888 + L1ME LINE L1 4438 5033 -1113 344 159 58 0 chr11 146643437 146643506 -2139966 - Tigger3(Golem) DNA MER2_type -2956 73 1 2190 74 0 3 chr11 146643536 146643863 -2139609 - AluSc SINE Alu 0 326 1 1521 146 127 8 chr11 146643888 146644155 -2139317 - AluJb SINE Alu -3 299 1 283 179 14 107 chr11 146644157 146644297 -2139175 - MER113 DNA MER1_type? -394 127 1 1975 124 4 4 chr11 146644305 146644579 -2138893 + AluSg SINE Alu 10 283 -27 1080 148 18 0 chr11 146645280 146645449 -2138023 - FRAM SINE Alu -7 169 1 226 345 55 36 chr11 146645539 146645649 -2137823 - L2 LINE L2 -4 3268 3157 340 227 148 0 chr11 146645656 146645744 -2137728 - MER5B DNA MER1_type -57 121 21 2269 99 0 7 chr11 146646208 146646510 -2136962 - AluSx SINE Alu -12 300 1 430 254 76 35 chr11 146646858 146647055 -2136417 - MLT1L LTR MaLR -263 352 148 197 254 102 113 chr11 146647312 146647489 -2135983 + L3 LINE CR1 1049 1223 -354 348 219 101 71 chr11 146648550 146648719 -2134753 + L1ME LINE L1 5422 5595 -526 288 111 22 0 chr11 146648776 146648821 -2134651 - L1MC5 LINE L1 -96 7865 7820 1524 152 8 19 chr11 146648855 146649112 -2134360 - AluJb SINE Alu -58 254 1 456 143 76 29 chr11 146649112 146649217 -2134255 - L1MC5 LINE L1 -128 7833 7724 2336 82 7 0 chr11 146649271 146649564 -2133908 - AluSq SINE Alu -18 295 1 251 155 172 0 chr11 146649968 146650026 -2133446 + L1MB5 LINE L1 6101 6168 -6 1876 129 11 0 chr11 146650046 146650325 -2133147 + AluJb SINE Alu 1 282 -30 350 321 42 0 chr11 146650555 146650745 -2132727 - AluSg SINE Alu -101 199 2 2358 88 3 3 chr11 146650802 146651108 -2132364 - AluY SINE Alu -5 306 1 813 130 0 0 chr11 146651720 146651835 -2131637 + AluSg/x SINE Alu 186 300 -10 2126 119 0 26 chr11 146651910 146652212 -2131260 - AluSx SINE Alu -18 294 1 2448 97 0 0 chr11 146652227 146652537 -2130935 - AluSx SINE Alu -2 310 1 238 182 0 61 chr11 146652537 146652603 -2130869 + MIR SINE MIR 103 164 -98 328 239 0 0 chr11 146652651 146652722 -2130750 + MLT1J LTR MaLR 110 180 -331 368 274 53 18 chr11 146652753 146652866 -2130606 + MLT1J LTR MaLR 257 373 -138 216 111 0 0 chr11 146653081 146653117 -2130355 + (TTA)n Simple_repeat Simple_repeat 2 37 0 2010 104 6 89 chr11 146653465 146653792 -2129680 - AluSx SINE Alu -12 300 1 189 319 66 11 chr11 146653874 146653965 -2129507 + MIR3 SINE MIR 105 200 -8 1962 174 0 0 chr11 146654221 146654525 -2128947 - AluJo SINE Alu -8 304 1 218 215 21 43 chr11 146655363 146655456 -2128016 + (CCCCG)n Simple_repeat Simple_repeat 3 93 0 2072 126 10 10 chr11 146655737 146656047 -2127425 - AluSx SINE Alu -2 310 1 455 264 118 83 chr11 146656079 146656704 -2126768 - L1ME4a LINE L1 -153 5968 5322 2323 98 3 13 chr11 146657298 146657605 -2125867 - AluSp SINE Alu -9 304 1 206 238 83 36 chr11 146657831 146657915 -2125557 - L2 LINE L2 -11 3261 3174 1550 152 6 108 chr11 146658172 146658515 -2124957 + AluJb SINE Alu 1 308 -4 2247 98 10 0 chr11 146658874 146659169 -2124303 + AluSx SINE Alu 1 298 -14 2211 104 3 10 chr11 146659533 146659831 -2123641 + AluSx SINE Alu 1 296 -16 1303 98 0 0 chr11 146659832 146659995 -2123477 + AluSp SINE Alu 134 296 -17 331 295 108 7 chr11 146660198 146660337 -2123135 + MIR SINE MIR 10 162 -100 1120 180 45 4 chr11 146660358 146660862 -2122610 + L1MB7 LINE L1 5504 6162 -22 2192 104 3 0 chr11 146660862 146661150 -2122322 + AluSx SINE Alu 2 290 -22 392 281 132 9 chr11 146661262 146661477 -2121995 - L1M4 LINE L1 -2308 3838 3603 2058 114 25 0 chr11 146661481 146661762 -2121710 - AluSx SINE Alu -24 288 1 2370 76 27 3 chr11 146661945 146662246 -2121226 - AluY SINE Alu -3 308 1 343 304 43 43 chr11 146662507 146662645 -2120827 + Tigger8 DNA MER2_type 30 167 -499 2433 92 0 0 chr11 146663437 146663741 -2119731 - AluSq SINE Alu -9 304 1 1704 167 22 19 chr11 146664281 146664592 -2118880 - AluJo SINE Alu 0 312 1 3478 155 58 0 chr11 146664602 146665222 -2118250 - L1MB1 LINE L1 0 6168 5513 2653 37 0 0 chr11 146665222 146665516 -2117956 + AluY SINE Alu 1 294 -17 1472 186 0 3 chr11 146665516 146665801 -2117671 - L1MB1 LINE L1 -2225 3921 3638 3039 168 65 42 chr11 146665804 146666425 -2117047 + L1 LINE L1 2857 3501 -2645 2260 114 0 13 chr11 146666425 146666741 -2116731 + AluSx SINE Alu 1 312 0 3039 168 65 42 chr11 146666741 146666883 -2116589 + L1 LINE L1 3501 3638 -2508 * 4211 175 110 12 chr11 146666858 146668334 -2115138 - L1MB4 LINE L1 -30 6150 4526 230 294 56 89 chr11 146668506 146668686 -2114786 + Charlie8 DNA MER1_type 3 176 -2241 250 152 130 0 chr11 146669839 146669885 -2113587 + PABL_A-int LTR ERV1 1653 1704 -3311 24 32 0 0 chr11 146669924 146669955 -2113517 + AT_rich Low_complexity Low_complexity 1 31 0 260 225 113 0 chr11 146670452 146670523 -2112949 + L2 LINE L2 2567 2645 -669 1810 171 140 38 chr11 146670853 146671275 -2112197 - MLT1C LTR MaLR 0 467 3 6046 79 13 63 chr11 146671504 146672512 -2110960 - SVA Other Other 0 1386 430 5644 73 38 52 chr11 146672565 146673425 -2110047 - SVA Other Other -518 868 21 326 297 235 25 chr11 146673466 146673789 -2109683 + HAL1 LINE L1 89 479 -2028 480 281 141 10 chr11 146673909 146674108 -2109364 + HAL1 LINE L1 793 1017 -1490 288 245 21 165 chr11 146674554 146674636 -2108836 + MIR SINE MIR 46 88 -174 7185 57 95 3 chr11 146674636 146675595 -2107877 - SVA Other Other -339 1047 1 288 245 21 165 chr11 146675595 146675700 -2107772 + MIR SINE MIR 88 206 -56 269 26 0 26 chr11 146675743 146675782 -2107690 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1730 151 7 14 chr11 146675785 146676069 -2107403 - AluSx SINE Alu -30 282 1 21 35 0 35 chr11 146676093 146676109 -2107363 + AT_rich Low_complexity Low_complexity 1 16 -39 2183 128 0 0 chr11 146676109 146676421 -2107051 - AluSx SINE Alu 0 312 1 2249 95 3 3 chr11 146676431 146676725 -2106747 - AluSg SINE Alu -14 296 3 21 35 0 35 chr11 146676725 146676754 -2106718 + AT_rich Low_complexity Low_complexity 25 55 0 208 313 11 50 chr11 146676895 146676924 -2106548 + (CATATA)n Simple_repeat Simple_repeat 2 31 -145 2115 106 0 11 chr11 146676924 146677207 -2106265 + AluSq SINE Alu 1 280 -33 189 0 0 0 chr11 146677208 146677229 -2106243 + (TAAAA)n Simple_repeat Simple_repeat 4 24 0 208 313 11 50 chr11 146677229 146677379 -2106093 + (CATATA)n Simple_repeat Simple_repeat 30 176 0 1385 146 87 66 chr11 146677802 146678089 -2105383 + AluJo SINE Alu 9 301 -11 1965 140 0 7 chr11 146678257 146678536 -2104936 + AluSx SINE Alu 3 279 -33 333 0 0 0 chr11 146678536 146678573 -2104899 + (CAAAA)n Simple_repeat Simple_repeat 1 37 0 198 0 0 0 chr11 146678573 146678595 -2104877 + (CA)n Simple_repeat Simple_repeat 1 22 0 516 167 0 0 chr11 146679181 146679271 -2104201 - MER3 DNA MER1_type 0 209 120 786 170 7 14 chr11 146679273 146679414 -2104058 + FLAM_C SINE Alu 2 141 -2 461 194 32 0 chr11 146679414 146679507 -2103965 - MER3 DNA MER1_type -80 129 34 2208 106 10 0 chr11 146679616 146679908 -2103564 + AluSq SINE Alu 1 295 -18 219 173 0 0 chr11 146679908 146679960 -2103512 + G-rich Low_complexity Low_complexity 4 55 0 216 111 0 0 chr11 146679978 146680014 -2103458 + (GGAGA)n Simple_repeat Simple_repeat 2 37 0 378 313 31 44 chr11 146681633 146681793 -2101679 + MER5A DNA MER1_type 25 182 -7 1842 158 14 30 chr11 146682175 146682472 -2101000 + AluJo SINE Alu 1 292 -20 1029 258 83 45 chr11 146682864 146683379 -2100093 - L1MC4a LINE L1 -1636 6172 5638 1317 212 120 22 chr11 146683780 146684139 -2099333 - MSTD LTR MaLR -2 394 1 1646 156 39 8 chr11 146684243 146684500 -2098972 - AluSx SINE Alu -47 265 1 2271 82 4 0 chr11 146685026 146685331 -2098141 + AluSg SINE Alu 1 306 0 1902 138 43 20 chr11 146686780 146687084 -2096388 - AluJo SINE Alu -1 311 1 221 373 0 0 chr11 146687224 146687316 -2096156 + MIR SINE MIR 33 124 -84 361 118 0 0 chr11 146687317 146687368 -2096104 + AluSg/x SINE Alu 65 115 -185 354 111 0 0 chr11 146687367 146687421 -2096051 - Alu SINE Alu 0 300 247 * 2212 150 14 69 chr11 146687443 146687526 -2095946 + L1MB8 LINE L1 5703 5789 -389 1358 165 173 0 chr11 146687526 146687781 -2095691 + AluJo SINE Alu 1 299 -3 2212 150 14 69 chr11 146687781 146688189 -2095283 + L1MB8 LINE L1 5789 6167 -11 1504 171 74 37 chr11 146688330 146688628 -2094844 - AluJb SINE Alu -3 309 1 372 298 150 35 chr11 146689107 146689453 -2094019 + MLT1K LTR MaLR 195 580 -8 287 203 13 38 chr11 146689491 146689570 -2093902 + MIR SINE MIR 185 261 -1 2273 112 0 10 chr11 146689623 146689926 -2093546 - AluSx SINE Alu -11 301 2 213 39 0 0 chr11 146689934 146689960 -2093512 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 816 186 7 0 chr11 146690001 146690141 -2093331 - AluJo SINE Alu -85 227 87 275 179 90 0 chr11 146690382 146690449 -2093023 - L1ME LINE L1 -420 5701 5629 591 191 23 61 chr11 146691033 146691164 -2092308 - FLAM_A SINE Alu -7 126 1 272 314 114 14 chr11 146691229 146691439 -2092033 + L3 LINE CR1 993 1223 -354 2123 122 7 3 chr11 146691447 146691741 -2091731 + AluSx SINE Alu 1 295 -17 719 109 36 7 chr11 146691744 146691881 -2091591 + GA-rich Low_complexity Low_complexity 4 144 0 1998 114 24 14 chr11 146692370 146692667 -2090805 + AluSq SINE Alu 1 300 -13 410 289 69 31 chr11 146692752 146692911 -2090561 + MER69A DNA AcHobo 1 165 -12 1022 156 6 33 chr11 146693379 146693559 -2089913 + FAM SINE Alu 1 175 0 1952 142 3 17 chr11 146693564 146693912 -2089560 + AluJb SINE Alu 6 312 0 403 272 20 34 chr11 146694142 146694289 -2089183 + MIR SINE MIR 7 151 -111 208 301 182 34 chr11 146694313 146694609 -2088863 + L2 LINE L2 1618 1957 -1357 388 286 75 104 chr11 146695555 146695901 -2087571 - L2 LINE L2 -5 3267 2932 2435 73 0 19 chr11 146696087 146696401 -2087071 - AluY SINE Alu -3 308 1 2040 97 82 0 chr11 146696681 146696960 -2086512 - AluSx SINE Alu -8 304 3 983 201 193 8 chr11 146697060 146697309 -2086163 + AluSg SINE Alu 2 296 -4 194 61 0 30 chr11 146697561 146697594 -2085878 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 2004 102 0 66 chr11 146697596 146697899 -2085573 - AluSx SINE Alu -29 283 1 1250 190 22 123 chr11 146698627 146699043 -2084429 - MLT1A2 LTR MaLR 0 374 1 24 32 0 0 chr11 146701136 146701167 -2082305 + GC_rich Low_complexity Low_complexity 1 31 0 211 211 28 28 chr11 146701650 146701721 -2081751 + G-rich Low_complexity Low_complexity 6 76 0 2438 66 7 7 chr11 146703215 146703517 -2079955 - AluSx SINE Alu -10 302 1 547 147 29 0 chr11 146703645 146703747 -2079725 + MER3 DNA MER1_type 65 122 -87 * 962 155 40 0 chr11 146703746 146703920 -2079552 + MER3 DNA MER1_type 2232 2412 0 248 296 307 0 chr11 146704020 146704209 -2079263 + HAL1 LINE L1 1198 1444 -1063 2175 119 0 10 chr11 146704210 146704520 -2078952 - AluSg SINE Alu -3 307 1 2448 82 3 0 chr11 146704523 146704828 -2078644 - AluSp SINE Alu -7 306 1 1090 110 0 0 chr11 146704828 146704964 -2078508 - AluSq/x SINE Alu -177 136 1 1034 264 191 41 chr11 146705001 146705592 -2077880 + HAL1 LINE L1 1473 1974 -533 1264 201 112 8 chr11 146705592 146705851 -2077621 + AluJo SINE Alu 1 286 -26 1034 264 191 41 chr11 146705851 146706159 -2077313 + HAL1 LINE L1 1974 2507 0 189 250 20 90 chr11 146706359 146706459 -2077013 - L2 LINE L2 -44 3228 3136 1466 205 20 0 chr11 146706911 146707204 -2076268 + AluJo SINE Alu 1 299 -13 1442 196 67 11 chr11 146707879 146708164 -2075308 + AluJb SINE Alu 1 301 -11 2446 75 0 0 chr11 146708585 146708879 -2074593 + AluSc SINE Alu 1 294 -15 194 313 0 0 chr11 146709841 146709908 -2073564 - MIR SINE MIR -126 136 70 301 301 24 16 chr11 146710346 146710469 -2073003 - MIR SINE MIR -22 240 117 662 242 33 6 chr11 146710500 146710682 -2072790 - MIR SINE MIR -20 242 56 2376 64 3 35 chr11 146711639 146711953 -2071519 - AluY SINE Alu -7 304 1 1355 215 10 13 chr11 146712117 146712428 -2071044 - L1MD3 LINE L1 -9 7986 7677 301 239 57 11 chr11 146712461 146712549 -2070923 - L1MC4 LINE L1 -679 7363 7272 2293 97 3 10 chr11 146714674 146714985 -2068487 - AluSx SINE Alu -3 309 1 1614 191 7 14 chr11 146715598 146715892 -2067580 + AluJb SINE Alu 1 292 -20 222 128 0 0 chr11 146716128 146716167 -2067305 + (TC)n Simple_repeat Simple_repeat 2 40 0 2353 86 3 3 chr11 146716169 146716471 -2067001 - AluSp SINE Alu -11 302 1 271 313 99 44 chr11 146716786 146717058 -2066414 + L2 LINE L2 2555 2841 -473 2076 123 0 3 chr11 146717163 146717455 -2066017 - AluSg SINE Alu -19 291 1 259 340 21 10 chr11 146717556 146717653 -2065819 + L2 LINE L2 3159 3256 -16 8695 46 12 0 chr11 146717835 146719675 -2063797 + L1PA5 LINE L1 4289 6153 -1 675 167 33 0 chr11 146720473 146720593 -2062879 - FLAM_C SINE Alu -11 132 9 1348 238 53 6 chr11 146722574 146722893 -2060579 + MER119 DNA MER1_type 2 335 -248 591 209 85 0 chr11 146722931 146723060 -2060412 + MER119 DNA MER1_type 431 570 -13 1011 188 74 108 chr11 146724243 146724666 -2058806 - L1MD3 LINE L1 0 8036 7642 583 81 0 0 chr11 146724727 146724801 -2058671 - U4 snRNA snRNA -71 74 1 434 222 290 13 chr11 146724801 146724957 -2058515 - L1MC4 LINE L1 -364 7631 7388 * 1116 208 26 23 chr11 146724956 146725220 -2058252 - L1MC4 LINE L1 -1031 7011 6747 23 0 0 0 chr11 146725660 146725683 -2057789 + AT_rich Low_complexity Low_complexity 1 23 0 657 112 0 0 chr11 146725683 146725781 -2057691 - L1MA3 LINE L1 0 6305 6208 455 240 86 60 chr11 146726765 146726948 -2056524 - L1ME4a LINE L1 -271 5850 5655 1541 164 66 3 chr11 146726948 146727235 -2056237 - AluSx SINE Alu -5 307 3 455 240 86 60 chr11 146727235 146727284 -2056188 - L1ME4a LINE L1 -466 5655 5609 1995 147 3 3 chr11 146727313 146727605 -2055867 + AluSx SINE Alu 1 292 -20 24 0 0 0 chr11 146727735 146727759 -2055713 + AT_rich Low_complexity Low_complexity 1 24 0 523 89 34 2 chr11 146727910 146728089 -2055383 - AluSg/x SINE Alu -15 295 79 2282 86 0 16 chr11 146728254 146728557 -2054915 + AluY SINE Alu 1 298 -13 458 213 23 0 chr11 146728849 146728968 -2054504 - MIR SINE MIR -40 168 42 260 274 63 40 chr11 146729884 146730059 -2053413 - L1MC5 LINE L1 -51 7910 7732 952 258 227 32 chr11 146730112 146730698 -2052774 - L1MC4 LINE L1 -43 7999 7300 28 61 0 0 chr11 146731888 146731937 -2051535 + AT_rich Low_complexity Low_complexity 1 49 0 303 146 0 0 chr11 146732201 146732256 -2051216 + (GAA)n Simple_repeat Simple_repeat 2 56 0 331 233 0 11 chr11 146732498 146732588 -2050884 - L1MC4 LINE L1 -473 7569 7481 224 208 0 0 chr11 146732816 146732864 -2050608 + GA-rich Low_complexity Low_complexity 1 48 0 313 157 57 14 chr11 146737831 146737901 -2045571 + MER113 DNA MER1_type? 349 421 -100 330 331 55 8 chr11 146737969 146738096 -2045376 - MIR SINE MIR -74 188 56 330 87 0 0 chr11 146739103 146739149 -2044323 - MADE1 DNA Mariner -34 46 1 1942 160 3 0 chr11 146741615 146741915 -2041557 - AluSx SINE Alu -11 301 1 22 0 0 0 chr11 146743121 146743143 -2040329 + AT_rich Low_complexity Low_complexity 1 22 0 1938 169 0 0 chr11 146743641 146743936 -2039536 - AluJb SINE Alu -15 297 3 410 286 178 47 chr11 146744872 146745556 -2037916 - L2 LINE L2 -338 2976 2203 973 222 41 22 chr11 146745563 146745833 -2037639 + L1MA9 LINE L1 6004 6278 -34 215 186 23 0 chr11 146746363 146746406 -2037066 - L2 LINE L2 -19 3294 3251 517 250 61 7 chr11 146746917 146747065 -2036407 - MIR SINE MIR -78 184 29 352 323 90 32 chr11 146748399 146748588 -2034884 - MIR SINE MIR -38 224 25 2023 124 6 41 chr11 146749097 146749412 -2034060 - AluJb SINE Alu -6 306 3 2500 66 0 0 chr11 146751532 146751820 -2031652 - AluY SINE Alu -21 290 3 2051 151 3 6 chr11 146753217 146753529 -2029943 - AluSx SINE Alu -1 311 1 213 239 43 0 chr11 146753565 146753611 -2029861 - L3b LINE CR1 -5 1578 1531 2219 97 30 13 chr11 146756371 146756671 -2026801 - AluSg SINE Alu -5 305 1 2402 90 0 3 chr11 146757875 146758175 -2025297 - AluY SINE Alu -12 299 1 2012 116 34 3 chr11 146758247 146758539 -2024933 - AluSx SINE Alu -11 301 1 304 248 214 0 chr11 146758592 146758802 -2024670 - Charlie7 DNA MER1_type -31 2581 2327 1785 178 126 14 chr11 146758827 146758879 -2024593 - L1MC3 LINE L1 -171 7614 7569 2490 81 3 3 chr11 146758879 146759188 -2024284 - AluSp SINE Alu -4 309 1 1785 178 126 14 chr11 146759188 146759579 -2023893 - L1MC3 LINE L1 -216 7569 7121 392 211 28 9 chr11 146759588 146759697 -2023775 - Charlie7 DNA MER1_type -297 2315 2205 523 167 108 0 chr11 146759699 146759801 -2023671 + L1MA10 LINE L1 6215 6327 -7 1742 140 78 0 chr11 146759810 146759823 -2023649 - AluSx SINE Alu -19 293 282 198 0 0 0 chr11 146759823 146759845 -2023627 + (TG)n Simple_repeat Simple_repeat 1 22 0 1742 140 78 0 chr11 146759845 146760102 -2023370 - AluSx SINE Alu -30 282 2 1054 238 99 14 chr11 146760290 146760652 -2022820 - Charlie7 DNA MER1_type -1659 953 561 1041 269 93 39 chr11 146760956 146761440 -2022032 + LTR67 LTR ERVL 24 533 -24 756 267 127 35 chr11 146761558 146762045 -2021427 + L1MC4a LINE L1 6476 7007 -801 1385 139 0 0 chr11 146762063 146762264 -2021208 + AluSg/x SINE Alu 102 302 -10 1109 255 57 34 chr11 146762269 146762736 -2020736 + L1MC5 LINE L1 7036 7515 -441 2164 114 7 0 chr11 146762736 146763055 -2020417 + AluSx SINE Alu 1 321 0 2359 106 0 3 chr11 146763068 146763379 -2020093 + AluSg SINE Alu 1 310 0 1497 128 6 113 chr11 146763482 146763809 -2019663 + AluJb SINE Alu 5 296 -6 2521 66 0 19 chr11 146763810 146764127 -2019345 + AluY SINE Alu 1 311 0 1476 88 0 5 chr11 146764269 146764461 -2019011 - AluSg/x SINE Alu -5 304 114 2435 82 3 0 chr11 146764604 146764897 -2018575 + AluSp SINE Alu 3 296 -17 355 311 61 53 chr11 146765055 146765319 -2018153 - L2 LINE L2 -648 2666 2401 901 179 6 6 chr11 146765423 146765591 -2017881 - FAM SINE Alu -7 168 1 2314 106 0 22 chr11 146765854 146766174 -2017298 + AluSq SINE Alu 1 313 0 214 371 82 0 chr11 146767190 146767360 -2016112 + MIR SINE MIR 5 188 -74 22 0 0 0 chr11 146767735 146767757 -2015715 + AT_rich Low_complexity Low_complexity 1 22 0 2024 114 25 14 chr11 146767767 146768048 -2015424 - AluSx SINE Alu 0 312 29 199 330 68 0 chr11 146768123 146768211 -2015261 - L2 LINE L2 0 3272 3179 434 244 9 35 chr11 146768306 146768421 -2015051 - MLT1I LTR MaLR -2 407 296 482 274 17 0 chr11 146768533 146768650 -2014822 - MLT1I LTR MaLR -279 130 12 275 284 127 15 chr11 146769046 146769180 -2014292 - L2 LINE L2 -802 2512 2364 311 273 57 0 chr11 146769196 146769284 -2014188 + L2 LINE L2 3210 3302 -11 260 138 31 46 chr11 146769979 146770044 -2013428 + (CGGG)n Simple_repeat Simple_repeat 2 65 0 24 53 0 0 chr11 146770187 146770225 -2013247 + GC_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr11 146770511 146770534 -2012938 + GC_rich Low_complexity Low_complexity 1 23 0 301 284 52 45 chr11 146772917 146773051 -2010421 - L2 LINE L2 0 3272 3138 354 282 53 15 chr11 146773218 146773349 -2010123 + MIR SINE MIR 77 212 -50 663 163 0 44 chr11 146773720 146773855 -2009617 - FLAM_A SINE Alu -1 132 4 2087 142 3 0 chr11 146774729 146775024 -2008448 - AluJb SINE Alu -16 296 1 315 0 0 0 chr11 146775024 146775059 -2008413 + (TTA)n Simple_repeat Simple_repeat 2 36 0 2304 81 7 0 chr11 146775059 146775342 -2008130 - AluSp SINE Alu -28 285 1 555 244 0 0 chr11 146775348 146775467 -2008005 - MIR SINE MIR -108 154 36 194 140 0 40 chr11 146775934 146775984 -2007488 + (ATGGTG)n Simple_repeat Simple_repeat 6 53 0 363 284 179 25 chr11 146776053 146776215 -2007257 - MIR SINE MIR -70 192 6 393 353 86 5 chr11 146776254 146776441 -2007031 + L3 LINE CR1 243 444 -1133 489 336 45 16 chr11 146776692 146776939 -2006533 + L3 LINE CR1 520 773 -804 2282 114 0 0 chr11 146777233 146777523 -2005949 + AluSx SINE Alu 1 290 -22 2163 125 3 3 chr11 146778023 146778319 -2005153 - AluSx SINE Alu -16 296 1 433 315 62 7 chr11 146778319 146778465 -2005007 - L1ME4a LINE L1 -234 5887 5734 381 321 113 41 chr11 146778479 146778868 -2004604 + L3 LINE CR1 975 1391 -186 1455 215 117 52 chr11 146779233 146779397 -2004075 + L1MD2 LINE L1 5769 5921 -438 2462 86 7 0 chr11 146779397 146779699 -2003773 - AluSx SINE Alu -8 304 1 1455 215 117 52 chr11 146779699 146780074 -2003398 + L1MD2 LINE L1 5921 6343 -16 268 173 0 0 chr11 146781198 146781250 -2002222 - L1MA10 LINE L1 -4 6330 6279 444 185 0 12 chr11 146781357 146781438 -2002034 - LTR62 LTR ERVK -451 268 189 479 228 18 0 chr11 146781464 146781578 -2001894 - L1MA10 LINE L1 -51 6283 6168 23 33 0 0 chr11 146781581 146781611 -2001861 + AT_rich Low_complexity Low_complexity 1 30 0 813 198 11 32 chr11 146781641 146781828 -2001644 - L1M3 LINE L1 -366 5802 5620 3799 138 43 45 chr11 146781881 146782405 -2001067 - LTR62 LTR ERVK -1 718 195 1820 141 46 23 chr11 146782405 146782710 -2000762 - AluJo SINE Alu 0 312 1 2617 68 0 0 chr11 146782713 146783021 -2000451 - AluY SINE Alu -3 308 1 3799 138 43 45 chr11 146783021 146783210 -2000262 - LTR62 LTR ERVK -526 193 2 231 136 85 17 chr11 146783368 146783427 -2000045 + MIR SINE MIR 90 152 -110 2309 91 7 0 chr11 146783620 146783916 -1999556 + AluSx SINE Alu 1 298 -14 320 226 95 51 chr11 146784650 146784787 -1998685 - MIR3 SINE MIR -62 146 4 217 49 0 49 chr11 146784796 146784837 -1998635 + (TGGGGG)n Simple_repeat Simple_repeat 1 39 0 2032 126 108 18 chr11 146784856 146785245 -1998227 + LTR62 LTR ERVK 2 425 -294 2406 101 0 13 chr11 146785672 146785988 -1997484 - AluSp SINE Alu -1 312 1 2183 101 4 7 chr11 146785989 146786267 -1997205 - AluSx SINE Alu -35 277 1 2530 84 0 0 chr11 146786681 146786992 -1996480 - AluY SINE Alu 0 311 1 2367 110 0 0 chr11 146787093 146787401 -1996071 - AluY SINE Alu -2 309 2 2311 89 7 0 chr11 146787587 146787880 -1995592 + AluSq SINE Alu 1 295 -18 2841 145 64 2 chr11 146788201 146788699 -1994773 - LTR62 LTR ERVK -4 715 187 426 55 0 0 chr11 146788697 146788752 -1994720 - LTR62 LTR ERVK -664 55 1 * 212 301 24 57 chr11 146789430 146789553 -1993919 + MER5B DNA MER1_type 7 125 -53 312 319 0 0 chr11 146792000 146792091 -1991381 + MIR3 SINE MIR 77 167 -41 198 229 49 16 chr11 146792371 146792432 -1991040 + MIR SINE MIR 32 94 -114 1353 175 27 93 chr11 146792610 146792942 -1990530 - AluJb SINE Alu -2 310 1 2233 111 3 3 chr11 146792957 146793254 -1990218 - AluSx SINE Alu -15 297 1 2431 91 0 10 chr11 146793256 146793564 -1989908 - AluSq SINE Alu -8 305 1 291 295 21 11 chr11 146793625 146793720 -1989752 + HAL1 LINE L1 814 909 -1598 853 122 15 0 chr11 146793732 146793863 -1989609 + FLAM_A SINE Alu 1 133 0 897 219 45 0 chr11 146793866 146794112 -1989360 - L1M4 LINE L1 -1553 4593 4337 * 1158 288 65 17 chr11 146794108 146794583 -1988889 + L1ME1 LINE L1 5664 6161 -5 292 211 48 19 chr11 146794593 146794697 -1988775 + HAL1 LINE L1 1096 1202 -1305 * 313 318 11 37 chr11 146794690 146794879 -1988593 - HAL1 LINE L1 -1055 1452 1269 818 252 280 30 chr11 146795031 146795709 -1987763 + HAL1 LINE L1 456 1303 -1204 1633 178 0 11 chr11 146795709 146795973 -1987499 + AluJo SINE Alu 35 295 -17 1293 256 125 67 chr11 146795983 146796107 -1987365 + HAL1 LINE L1 1429 1544 -963 2317 121 0 0 chr11 146796107 146796412 -1987060 - AluSx SINE Alu -7 305 1 1293 256 125 67 chr11 146796412 146797202 -1986270 + HAL1 LINE L1 1544 2396 -111 1780 203 135 28 chr11 146801291 146801376 -1982096 - MER74A LTR ERVL -1 557 483 1692 134 73 0 chr11 146801376 146801637 -1981835 + AluJb SINE Alu 4 283 -29 1780 203 135 28 chr11 146801637 146801712 -1981760 - MER74A LTR ERVL -75 483 417 2429 96 0 0 chr11 146801712 146802015 -1981457 + AluSx SINE Alu 1 303 -9 1780 203 135 28 chr11 146802015 146802356 -1981116 - MER74A LTR ERVL -141 417 1 334 264 71 52 chr11 146802585 146802699 -1980773 - L1ME4a LINE L1 -4 6117 5998 2293 101 0 10 chr11 146802699 146802996 -1980476 - AluSx SINE Alu -18 294 1 334 264 71 52 chr11 146802996 146803036 -1980436 - L1ME4a LINE L1 -123 5998 5960 991 242 22 5 chr11 146803183 146803406 -1980066 + MIR SINE MIR 2 228 -34 1416 150 83 4 chr11 146803408 146803661 -1979811 - AluJo SINE Alu -19 293 21 2258 92 7 0 chr11 146803781 146804074 -1979398 - AluSx SINE Alu -17 295 1 528 206 0 0 chr11 146805065 146805196 -1978276 + (TG)n Simple_repeat Simple_repeat 1 131 0 1920 169 10 3 chr11 146805269 146805576 -1977896 + AluJo SINE Alu 1 309 -3 223 308 51 28 chr11 146805631 146805778 -1977694 + MIR SINE MIR 38 147 -61 2375 100 0 0 chr11 146805876 146806176 -1977296 + AluSg SINE Alu 1 300 -10 2199 101 0 10 chr11 146806178 146806499 -1976973 + AluSx SINE Alu 1 318 0 189 0 0 0 chr11 146807821 146807842 -1975630 + (CAGGG)n Simple_repeat Simple_repeat 1 21 0 359 314 31 21 chr11 146809378 146809572 -1973900 + MER91A DNA MER1_type 1 196 0 2429 119 57 2 chr11 146810548 146810950 -1972522 - MSTB LTR MaLR 0 426 3 284 259 91 49 chr11 146811054 146811197 -1972275 - MIR SINE MIR -91 171 23 483 326 71 1 chr11 146811208 146811411 -1972061 + MIR SINE MIR 29 243 -19 1673 183 7 4 chr11 146811907 146812180 -1971292 - AluJo SINE Alu -38 274 1 1201 214 49 4 chr11 146812189 146812456 -1971016 - L1MD3 LINE L1 -1063 6932 6654 468 280 115 6 chr11 146813029 146813211 -1970261 + MIR SINE MIR 40 241 -21 2384 94 0 7 chr11 146813949 146814257 -1969215 - AluSq SINE Alu -7 306 1 2196 131 0 7 chr11 146814832 146815129 -1968343 + AluSx SINE Alu 1 295 -17 239 249 65 142 chr11 146815360 146815438 -1968034 - L1MC4 LINE L1 -1 8041 7959 2179 89 3 10 chr11 146815438 146815730 -1967742 - AluSg SINE Alu -20 290 1 239 249 65 142 chr11 146815730 146815912 -1967560 - L1MC4 LINE L1 -83 7959 7801 2228 111 20 0 chr11 146816002 146816299 -1967173 - AluSg SINE Alu -7 303 1 1228 274 99 79 chr11 146816315 146816860 -1966612 - L1MC4 LINE L1 -356 7686 7114 2365 110 0 0 chr11 146816860 146817170 -1966302 - AluSx SINE Alu -2 310 1 1228 274 99 79 chr11 146817170 146817525 -1965947 - L1MC4 LINE L1 -928 7114 6768 2214 140 0 0 chr11 146817574 146817881 -1965591 + AluSx SINE Alu 4 310 -2 2215 99 0 11 chr11 146818093 146818399 -1965073 + AluSg SINE Alu 1 303 0 345 318 46 7 chr11 146819122 146819275 -1964197 + MIR SINE MIR 3 154 -62 1791 132 68 14 chr11 146821173 146821469 -1962003 - AluJo SINE Alu 0 312 1 355 233 60 53 chr11 146822430 146822580 -1960892 + MER5A DNA MER1_type 1 151 -38 267 173 0 0 chr11 146824019 146824071 -1959401 + (TG)n Simple_repeat Simple_repeat 2 53 0 581 225 7 0 chr11 146824249 146824400 -1959072 + (TG)n Simple_repeat Simple_repeat 2 153 0 340 129 14 14 chr11 146824426 146824496 -1958976 + (TG)n Simple_repeat Simple_repeat 2 71 0 368 283 133 33 chr11 146824633 146824813 -1958659 - MIR SINE MIR -44 218 21 1691 146 26 43 chr11 146825007 146825309 -1958163 + AluJo SINE Alu 2 298 -14 2308 120 0 0 chr11 146828481 146828782 -1954690 - AluSx SINE Alu -11 301 1 2790 36 0 0 chr11 146829840 146830148 -1953324 - AluY SINE Alu -3 308 1 2097 83 0 4 chr11 146831957 146832223 -1951249 - AluSq SINE Alu -23 290 26 186 366 69 40 chr11 146833107 146833383 -1950089 - L2 LINE L2 -55 3217 2934 341 256 58 0 chr11 146833776 146833862 -1949610 - MIR SINE MIR -15 247 157 260 357 88 6 chr11 146834009 146834180 -1949292 - L2 LINE L2 -569 2745 2561 2290 100 7 0 chr11 146834706 146835005 -1948467 + AluY SINE Alu 1 301 -10 1711 150 11 38 chr11 146835921 146836208 -1947264 - AluJb SINE Alu -32 280 2 27 0 0 0 chr11 146838286 146838313 -1945159 + AT_rich Low_complexity Low_complexity 1 27 0 198 0 0 0 chr11 146840715 146840737 -1942735 + (T)n Simple_repeat Simple_repeat 1 22 0 189 229 0 0 chr11 146841944 146841992 -1941480 + T-rich Low_complexity Low_complexity 2 49 0 1688 167 3 21 chr11 146843045 146843332 -1940140 + AluJo SINE Alu 25 306 -6 27 29 0 0 chr11 146844202 146844236 -1939236 + AT_rich Low_complexity Low_complexity 1 34 0 344 242 129 48 chr11 146845221 146845345 -1938127 + L1ME4a LINE L1 5982 6115 -6 721 191 0 0 chr11 146845855 146845981 -1937491 + FAM SINE Alu 1 40 -9 1840 97 127 15 chr11 146846020 146846288 -1937184 + AluSg SINE Alu 1 298 -12 239 203 78 0 chr11 146846448 146846512 -1936960 - MIR SINE MIR -99 109 41 226 258 117 50 chr11 146848353 146848473 -1934999 - L1MC4 LINE L1 -1 8041 7914 1083 292 55 42 chr11 146849136 146849680 -1933792 - L2 LINE L2 -498 2816 2266 719 276 96 0 chr11 146849683 146849882 -1933590 - MER58A DNA MER1_type -6 218 1 2553 54 3 0 chr11 146850344 146850642 -1932830 - AluY SINE Alu -12 299 1 366 198 35 60 chr11 146851128 146851244 -1932228 + MER58B DNA MER1_type 223 335 -6 743 233 128 90 chr11 146851266 146851854 -1931618 - L1ME3A LINE L1 -219 5934 5325 334 290 88 9 chr11 146851855 146852072 -1931400 - L1ME3A LINE L1 -834 5295 5062 512 267 53 15 chr11 146852212 146852418 -1931054 - L1ME3A LINE L1 -1301 4828 4615 29 60 0 0 chr11 146852840 146852890 -1930582 + AT_rich Low_complexity Low_complexity 1 50 0 344 261 90 0 chr11 146852890 146853001 -1930471 - L1ME3A LINE L1 -4761 1549 1429 315 257 108 21 chr11 146853096 146853395 -1930077 - L1MDa LINE L1 -4910 1209 871 402 303 73 76 chr11 146853397 146853753 -1929719 - L1MDa LINE L1 -5221 898 544 632 276 11 6 chr11 146853984 146854173 -1929299 - L1ME LINE L1 -512 5650 5462 2527 71 0 0 chr11 146854688 146854998 -1928474 + AluY SINE Alu 1 310 -1 279 203 0 0 chr11 146856563 146856622 -1926850 + (CATATA)n Simple_repeat Simple_repeat 4 62 0 249 250 0 15 chr11 146856959 146857027 -1926445 - MIR SINE MIR -16 246 180 1181 187 172 61 chr11 146857086 146857562 -1925910 + MER90 LTR ERV1 79 607 -7 410 226 30 46 chr11 146857987 146858174 -1925298 + L1MB8 LINE L1 5834 6020 -163 2178 129 3 0 chr11 146858662 146858971 -1924501 + AluSx SINE Alu 1 310 -2 2193 132 0 0 chr11 146859124 146859420 -1924052 + AluSx SINE Alu 1 296 -16 19602 136 23 106 chr11 146859809 146862928 -1920544 + L1PA5 LINE L1 12 3388 -2758 14795 41 1 7 chr11 146862928 146865528 -1917944 + L1PA5 LINE L1 3548 6143 -11 19602 136 23 106 chr11 146865528 146866698 -1916774 + L1PA5 LINE L1 3388 3860 -2286 2167 83 73 7 chr11 146866698 146866986 -1916486 + AluSc SINE Alu 1 307 -2 19602 136 23 106 chr11 146866986 146867515 -1915957 + L1PA5 LINE L1 3860 4431 -1715 251 100 33 17 chr11 146867502 146867562 -1915910 + L1PA8 LINE L1 6112 6172 0 * 1230 219 39 73 chr11 146867573 146868011 -1915461 + MLT1C LTR MaLR 45 467 0 391 207 110 30 chr11 146868366 146868530 -1914942 - MER104 DNA MER2_type 0 180 4 272 268 189 24 chr11 146868855 146868982 -1914490 + MLT1J LTR MaLR 1 148 -363 2252 84 33 0 chr11 146869210 146869542 -1913930 + L1PA7 LINE L1 4316 4658 -1488 5339 82 0 1 chr11 146869546 146870264 -1913208 + L1PA7 LINE L1 5436 6152 -2 211 71 48 0 chr11 146870306 146870348 -1913124 + (TAAA)n Simple_repeat Simple_repeat 1 44 0 247 325 119 87 chr11 146870463 146870890 -1912582 + L2 LINE L2 2831 3271 -1 2152 92 3 0 chr11 146872431 146872739 -1910733 - AluSx SINE Alu 0 309 1 327 302 31 8 chr11 146872784 146872913 -1910559 - MIR SINE MIR -3 259 128 241 211 35 0 chr11 146872996 146873053 -1910419 + GA-rich Low_complexity Low_complexity 4 62 0 1872 152 0 10 chr11 146873077 146873367 -1910105 + AluJb SINE Alu 2 288 -24 849 267 33 17 chr11 146874307 146874547 -1908925 + MIR SINE MIR 13 256 -6 11742 135 20 7 chr11 146875071 146875530 -1907942 + Tigger1 DNA MER2_type 2 454 -1964 1808 122 8 0 chr11 146875530 146875777 -1907695 - AluSx SINE Alu -15 297 49 11742 135 20 7 chr11 146875777 146877266 -1906206 + Tigger1 DNA MER2_type 454 1975 -443 1712 180 7 0 chr11 146877284 146877573 -1905899 + AluJb SINE Alu 1 291 -21 757 99 23 30 chr11 146877580 146877711 -1905761 + Tigger1 DNA MER2_type 813 942 -1476 1455 175 67 42 chr11 146877713 146877998 -1905474 - AluJo SINE Alu -19 293 2 1142 147 15 144 chr11 146877999 146878082 -1905390 + Tigger1 DNA MER2_type 1949 2041 -377 2090 100 13 32 chr11 146878082 146878391 -1905081 + AluSx SINE Alu 1 303 -9 1142 147 15 144 chr11 146878391 146878412 -1905060 + Tigger1 DNA MER2_type 2041 2063 -355 640 160 80 32 chr11 146878412 146878537 -1904935 + FLAM_C SINE Alu 1 131 -2 1142 147 15 144 chr11 146878537 146878758 -1904714 + Tigger1 DNA MER2_type 2063 2233 -185 452 238 139 0 chr11 146878774 146878875 -1904597 + FLAM_A SINE Alu 1 115 -18 2082 113 0 3 chr11 146878877 146879180 -1904292 - AluSx SINE Alu 0 302 1 2118 94 7 0 chr11 146879310 146879585 -1903887 + AluSq SINE Alu 2 278 -35 400 291 115 70 chr11 146879961 146880205 -1903267 + MIR SINE MIR 5 259 -3 190 167 21 83 chr11 146880621 146880669 -1902803 - L2 LINE L2 -966 2348 2304 276 213 254 25 chr11 146880703 146880825 -1902647 - MIR SINE MIR -28 234 85 307 291 24 39 chr11 146881098 146881225 -1902247 - L2 LINE L2 -934 2380 2256 592 198 101 54 chr11 146881580 146881807 -1901665 + L1MC5 LINE L1 6666 6903 -905 7798 206 144 29 chr11 146881807 146882249 -1901223 - L1MB8 LINE L1 -172 6817 6427 2042 119 10 7 chr11 146882249 146882542 -1900930 + AluSx SINE Alu 1 294 -18 7798 206 144 29 chr11 146882542 146883599 -1899873 - L1MB8 LINE L1 -562 6427 5493 1964 156 0 19 chr11 146883599 146883913 -1899559 - AluJb SINE Alu -4 308 1 7798 206 144 29 chr11 146883913 146884054 -1899418 - L1MB8 LINE L1 -1496 5493 5370 1074 173 62 13 chr11 146884054 146884087 -1899385 - MER46A DNA MER2_type -2495 236 206 1857 137 6 60 chr11 146884087 146884402 -1899070 + AluSx SINE Alu 1 298 -14 1074 173 62 13 chr11 146884402 146884593 -1898879 - MER46A DNA MER2_type -2525 206 1 7798 206 144 29 chr11 146884593 146885661 -1897811 - L1MB8 LINE L1 -1619 5370 4427 794 161 0 0 chr11 146885661 146885779 -1897693 - FLAM_C SINE Alu -15 118 1 7798 206 144 29 chr11 146885779 146885938 -1897534 - L1MB8 LINE L1 -2562 4427 4288 2220 108 0 0 chr11 146885938 146886226 -1897246 - AluSc SINE Alu -21 288 1 7798 206 144 29 chr11 146886226 146886245 -1897227 - L1MB8 LINE L1 -2701 4288 4273 2218 118 3 19 chr11 146886245 146886558 -1896914 + AluSq SINE Alu 1 308 -5 7798 206 144 29 chr11 146886558 146886728 -1896744 - L1MB8 LINE L1 -2716 4273 4124 2245 116 13 0 chr11 146886728 146887029 -1896443 - AluSg SINE Alu -5 305 1 7798 206 144 29 chr11 146887029 146887618 -1895854 - L1MB8 LINE L1 -2865 4124 2784 876 259 57 26 chr11 146887987 146888339 -1895133 - L1MEc LINE L1 -4593 1803 1441 1526 159 34 28 chr11 146888425 146888752 -1894720 - MER47A DNA MER2_type -20 346 18 1811 222 43 54 chr11 146888761 146889560 -1893912 - L1MB8 LINE L1 -4557 2321 1152 341 245 101 125 chr11 146889563 146889677 -1893795 - L1MB8 LINE L1 -5768 1091 976 1994 148 0 0 chr11 146889677 146889961 -1893511 + AluSx SINE Alu 1 284 -28 288 0 0 0 chr11 146889961 146889993 -1893479 + (CCAA)n Simple_repeat Simple_repeat 2 33 0 341 245 101 125 chr11 146889993 146890085 -1893387 - L1MB8 LINE L1 -5881 978 889 935 312 67 19 chr11 146890105 146890477 -1892995 - L1MB8 LINE L1 -6052 807 418 330 263 20 45 chr11 146890491 146890689 -1892783 + L1M4 LINE L1 2140 2332 -3814 672 244 83 0 chr11 146890714 146890943 -1892529 + L1M4 LINE L1 2448 2695 -3451 272 194 0 28 chr11 146890944 146891016 -1892456 + L1M4 LINE L1 2783 2852 -3294 551 244 118 19 chr11 146891042 146891313 -1892159 - L1M4 LINE L1 -1868 4278 3981 697 228 41 14 chr11 146891317 146891536 -1891936 + L1M4 LINE L1 2862 3086 -3060 1955 143 14 0 chr11 146891538 146891866 -1891606 + AluJo SINE Alu 1 332 0 2158 74 0 68 chr11 146891879 146892205 -1891267 - AluY SINE Alu -7 304 1 546 183 0 21 chr11 146892264 146892357 -1891115 + FRAM SINE Alu 60 150 -26 1699 182 66 23 chr11 146892432 146892858 -1890614 - L1MB3 LINE L1 -9 6174 5725 694 200 0 23 chr11 146893147 146893277 -1890195 - FLAM_A SINE Alu -6 127 1 609 105 49 84 chr11 146893284 146893336 -1890136 - L1MB3 LINE L1 0 6183 6131 2163 119 3 16 chr11 146893336 146893646 -1889826 - AluSx SINE Alu -6 306 1 609 105 49 84 chr11 146893646 146893736 -1889736 - L1MB3 LINE L1 -52 6131 6046 2254 124 0 13 chr11 146893984 146894299 -1889173 + AluSx SINE Alu 1 311 -1 1017 90 0 8 chr11 146894306 146894440 -1889032 + AluSq/x SINE Alu 1 133 -179 2198 99 3 7 chr11 146894887 146895181 -1888291 + AluSg SINE Alu 1 293 -17 2473 93 0 0 chr11 146895580 146895892 -1887580 - AluSq SINE Alu -1 312 1 22 70 0 0 chr11 146896651 146896694 -1886778 + AT_rich Low_complexity Low_complexity 1 43 0 180 271 85 17 chr11 146897128 146897187 -1886285 + MIR SINE MIR 168 230 -32 225 339 52 43 chr11 146897302 146897532 -1885940 + L2 LINE L2 2269 2500 -814 1365 167 109 91 chr11 146898061 146898391 -1885081 - Charlie1b DNA MER1_type -2238 523 179 2271 116 0 3 chr11 146898391 146898701 -1884771 + AluSx SINE Alu 1 309 -3 1365 167 109 91 chr11 146898701 146898884 -1884588 - Charlie1b DNA MER1_type -2582 179 1 2411 88 3 0 chr11 146898916 146899223 -1884249 + AluSx SINE Alu 1 308 -4 2158 101 13 10 chr11 146899501 146899799 -1883673 + AluSx SINE Alu 1 299 -13 314 232 254 14 chr11 146899996 146900138 -1883334 + MLT1L LTR MaLR 407 582 -33 1192 248 93 20 chr11 146900281 146900732 -1882740 + MLT1D LTR MaLR 22 505 0 209 296 165 0 chr11 146900772 146900887 -1882585 + L2 LINE L2 2529 2662 -652 436 244 35 58 chr11 146900988 146901160 -1882312 - MIR SINE MIR -21 241 74 2293 88 0 23 chr11 146901432 146901737 -1881735 - AluSg SINE Alu -12 298 1 1555 213 126 9 chr11 146902113 146902549 -1880923 - L1ME1 LINE L1 -13 6153 5667 32 0 0 0 chr11 146902810 146902842 -1880630 + AT_rich Low_complexity Low_complexity 1 32 0 1739 171 7 39 chr11 146903480 146903790 -1879682 + AluJb SINE Alu 1 300 -12 1895 127 3 57 chr11 146903798 146904126 -1879346 + AluSq SINE Alu 1 312 0 2124 137 0 10 chr11 146904427 146904741 -1878731 + AluSx SINE Alu 1 311 -1 279 0 0 0 chr11 146904839 146904870 -1878602 + (A)n Simple_repeat Simple_repeat 1 31 0 842 74 107 0 chr11 146904928 146905050 -1878422 + MER85 DNA T2_type 1 135 -4 27 0 0 0 chr11 146907597 146907624 -1875848 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr11 146907656 146907677 -1875795 + AT_rich Low_complexity Low_complexity 1 21 0 1252 192 97 73 chr11 146907760 146908141 -1875331 + MLT1B LTR MaLR 1 390 0 628 196 261 75 chr11 146908152 146908450 -1875022 + L1M4 LINE L1 2155 2396 -3750 1872 166 3 7 chr11 146908450 146908745 -1874727 - AluJb SINE Alu -18 294 1 628 196 261 75 chr11 146908745 146908756 -1874716 + L1M4 LINE L1 2396 2404 -3742 2383 105 0 0 chr11 146908756 146909062 -1874410 - AluSx SINE Alu -5 307 2 628 196 261 75 chr11 146909062 146909110 -1874362 + L1M4 LINE L1 2404 2442 -3704 318 80 0 0 chr11 146909110 146909160 -1874312 + (CA)n Simple_repeat Simple_repeat 1 50 0 628 196 261 75 chr11 146909160 146909187 -1874285 + L1M4 LINE L1 2442 2613 -3533 1250 165 5 9 chr11 146909187 146909399 -1874073 + AluJb SINE Alu 86 296 -16 1107 170 50 35 chr11 146909441 146909700 -1873772 + L1M4 LINE L1 2675 2937 -3209 1216 126 0 6 chr11 146909701 146909875 -1873597 + AluSg/x SINE Alu 130 302 -8 4325 150 11 21 chr11 146909892 146910639 -1872833 + L1MB3 LINE L1 5435 6173 -10 501 203 160 5 chr11 146910652 146910839 -1872633 + L1M4 LINE L1 3047 3262 -2884 592 297 63 106 chr11 146910858 146911633 -1871839 - L2 LINE L2 -1219 2095 1354 1511 205 0 33 chr11 146911672 146911979 -1871493 + AluJb SINE Alu 1 297 -15 1674 169 20 30 chr11 146912067 146912368 -1871104 + AluJo SINE Alu 1 298 -14 629 264 92 17 chr11 146912388 146912627 -1870845 - MIR SINE MIR -4 258 2 1948 121 3 11 chr11 146912992 146913274 -1870198 + AluSx SINE Alu 1 280 -32 2312 88 3 22 chr11 146913654 146913973 -1869499 + AluSp SINE Alu 1 313 0 21 82 0 0 chr11 146914887 146914936 -1868536 + AT_rich Low_complexity Low_complexity 1 49 0 546 107 0 0 chr11 146914940 146915015 -1868457 - U3 snRNA snRNA -142 75 1 5883 153 26 26 chr11 146915088 146916521 -1866951 + L1PB2 LINE L1 4173 5618 -533 2276 95 7 0 chr11 146916521 146916817 -1866655 + AluSp SINE Alu 1 298 -15 5883 153 26 26 chr11 146916817 146917352 -1866120 + L1PB2 LINE L1 5618 6151 0 2316 95 0 3 chr11 146917445 146917741 -1865731 + AluY SINE Alu 3 297 -14 254 243 122 0 chr11 146917896 146917970 -1865502 + MER7A DNA MER2_type 1 81 -265 466 119 0 15 chr11 146917971 146918038 -1865434 - AluSx SINE Alu -25 284 219 561 93 0 0 chr11 146918038 146918113 -1865359 + L1 LINE L1 4710 4784 -1362 1573 132 0 0 chr11 146918113 146918326 -1865146 - AluSx SINE Alu -99 213 1 1792 134 0 0 chr11 146918327 146918588 -1864884 + MER7A DNA MER2_type 68 328 -18 638 285 89 8 chr11 146918690 146918925 -1864547 + MIR SINE MIR 8 261 -1 2856 115 5 16 chr11 146919174 146919609 -1863863 + MER83 LTR ERV1 1 430 -18 2059 88 9 85 chr11 146919894 146920222 -1863250 + AluSx SINE Alu 3 305 -7 655 196 0 19 chr11 146920347 146920454 -1863018 + FLAM_C SINE Alu 14 118 -25 2165 129 13 3 chr11 146920480 146920791 -1862681 + 7SLRNA srpRNA srpRNA 1 314 -6 180 255 0 39 chr11 146920792 146920843 -1862629 - L3 LINE CR1 -212 1365 1317 1141 130 35 0 chr11 146921036 146921205 -1862267 - AluSg/x SINE Alu -5 305 131 1678 255 66 77 chr11 146921228 146921509 -1861963 + L1MC5 LINE L1 6123 6406 -1482 2008 147 0 7 chr11 146921509 146921809 -1861663 - AluJb SINE Alu -14 298 1 1678 255 66 77 chr11 146921809 146922890 -1860582 + L1MC5 LINE L1 6406 7472 -416 527 211 243 54 chr11 146922998 146923278 -1860194 + L1MC4 LINE L1 7619 7951 -91 412 286 101 21 chr11 146923450 146923639 -1859833 + MIR SINE MIR 33 236 -26 324 48 0 0 chr11 146924208 146924250 -1859222 + (TG)n Simple_repeat Simple_repeat 2 43 0 27 0 0 0 chr11 146924250 146924277 -1859195 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr11 146924677 146924700 -1858772 + GC_rich Low_complexity Low_complexity 1 23 0 32 57 0 0 chr11 146924735 146924788 -1858684 + GC_rich Low_complexity Low_complexity 1 53 0 181 104 0 83 chr11 146925078 146925126 -1858346 + (AGGGGG)n Simple_repeat Simple_repeat 3 46 0 207 116 0 47 chr11 146925127 146925170 -1858302 + (CCG)n Simple_repeat Simple_repeat 3 43 0 220 215 31 0 chr11 146925236 146925301 -1858171 + G-rich Low_complexity Low_complexity 5 71 0 4159 147 20 28 chr11 146926997 146927442 -1856030 - L1 LINE L1 -1396 4750 4310 1968 106 25 7 chr11 146927442 146927741 -1855731 + AluSg SINE Alu 2 305 0 4159 147 20 28 chr11 146927741 146928074 -1855398 - L1 LINE L1 -1836 4310 3976 1306 176 153 8 chr11 146928119 146928374 -1855098 - AluJo SINE Alu -10 292 1 376 318 215 19 chr11 146929096 146929417 -1854055 + L2 LINE L2 2465 2848 -466 2520 61 0 6 chr11 146929456 146929767 -1853705 - AluSc SINE Alu 0 309 1 2300 69 3 7 chr11 146929790 146930081 -1853391 - AluY SINE Alu -21 290 1 3084 127 38 4 chr11 146930082 146930561 -1852911 - Tigger1 DNA MER2_type -941 1477 983 * 3391 157 24 6 chr11 146930555 146931104 -1852368 - Tigger1 DNA MER2_type -1858 560 2 282 274 0 0 chr11 146931189 146931251 -1852221 - MLT1K LTR MaLR -326 262 201 1723 72 174 19 chr11 146931274 146931539 -1851933 + AluY SINE Alu 3 308 -3 21 0 0 0 chr11 146932002 146932023 -1851449 + AT_rich Low_complexity Low_complexity 1 21 0 5019 59 3 3 chr11 146932540 146933131 -1850341 - LTR10C LTR ERV1 0 591 1 3090 163 34 10 chr11 146933929 146934437 -1849035 + MLT2B1 LTR ERVL 1 520 0 195 42 0 0 chr11 146934573 146934597 -1848875 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 382 312 51 0 chr11 146934842 146934980 -1848492 + L2 LINE L2 1242 1386 -1928 2036 116 0 4 chr11 146934999 146935276 -1848196 + AluSx SINE Alu 1 276 -36 266 0 0 29 chr11 146935280 146935315 -1848157 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1803 197 18 79 chr11 146935319 146935612 -1847860 - MLT1D LTR MaLR -29 476 167 1849 110 61 4 chr11 146935612 146935904 -1847568 - AluSg SINE Alu 0 307 1 1803 197 18 79 chr11 146935904 146935915 -1847557 - MLT1D LTR MaLR -338 167 157 1725 177 42 30 chr11 146935915 146936276 -1847196 - L1MB8 LINE L1 0 6178 5814 1803 197 18 79 chr11 146936276 146936356 -1847116 - MLT1D LTR MaLR -348 157 126 2247 97 7 0 chr11 146936356 146936646 -1846826 - AluSg SINE Alu -18 292 1 1803 197 18 79 chr11 146936646 146936765 -1846707 - MLT1D LTR MaLR -379 126 1 2485 248 118 98 chr11 146936774 146937275 -1846197 + L2 LINE L2 1390 1879 -1435 850 157 8 15 chr11 146937275 146937409 -1846063 - FLAM_C SINE Alu 0 133 1 2841 160 17 19 chr11 146937411 146937823 -1845649 - L1MB4 LINE L1 -3 6177 5765 2256 108 10 0 chr11 146937823 146938128 -1845344 - AluSc SINE Alu -1 308 1 2841 160 17 19 chr11 146938128 146938235 -1845237 - L1MB4 LINE L1 -415 5765 5659 2485 248 118 98 chr11 146938235 146938830 -1844642 + L2 LINE L2 1879 2523 -791 631 198 0 58 chr11 146938830 146938951 -1844521 + FLAM_A SINE Alu 1 114 -19 2485 248 118 98 chr11 146938951 146939163 -1844309 + L2 LINE L2 2523 2729 -585 1549 198 38 14 chr11 146939580 146939868 -1843604 - AluJb SINE Alu -17 295 1 889 224 129 21 chr11 146940212 146940453 -1843019 - LTR48 LTR ERV1 -510 277 11 589 255 37 64 chr11 146940652 146940840 -1842632 - LTR48-int LTR ERV1 -213 4723 4541 * 3117 136 33 10 chr11 146940825 146941253 -1842219 - LTR49-int LTR ERV1 -524 5807 5363 2098 99 53 0 chr11 146941253 146941537 -1841935 + AluSp SINE Alu 1 299 -14 3117 136 33 10 chr11 146941537 146941629 -1841843 - LTR49-int LTR ERV1 -968 5363 5275 2793 138 18 13 chr11 146941972 146942428 -1841044 - LTR49-int LTR ERV1 -1052 5279 4822 640 250 0 0 chr11 146942435 146942559 -1840913 + FLAM_A SINE Alu 16 139 -3 1490 199 43 42 chr11 146942559 146943132 -1840340 - LTR49-int LTR ERV1 -1526 4805 4108 474 171 48 9 chr11 146943135 146943240 -1840232 - LTR49-int LTR ERV1 -2459 2664 2556 2030 126 0 14 chr11 146943281 146943586 -1839886 - AluSx SINE Alu 0 301 1 5524 134 20 58 chr11 146943619 146944512 -1838960 - L1MA3 LINE L1 0 6305 5455 2024 135 3 19 chr11 146944512 146944823 -1838649 - AluJb SINE Alu -4 308 3 5524 134 20 58 chr11 146944823 146944959 -1838513 - L1MA3 LINE L1 -850 5455 5315 1428 165 14 78 chr11 146944960 146945306 -1838166 - LTR49-int LTR ERV1 -2656 3675 3352 302 217 17 0 chr11 146945358 146945418 -1838054 - LTR49-int LTR ERV1 -2992 3339 3279 * 2046 169 110 145 chr11 146945416 146945480 -1837992 - LTR49-int LTR ERV1 -3217 3114 3049 2321 115 0 0 chr11 146945480 146945792 -1837680 + AluSq SINE Alu 1 312 -1 2046 169 110 145 chr11 146945792 146946543 -1836929 - LTR49-int LTR ERV1 -3282 3049 2327 1832 98 34 15 chr11 146946565 146946831 -1836641 - AluSq SINE Alu -12 301 31 6323 125 184 60 chr11 146946843 146948225 -1835247 - pTR5 LTR ERV1 -143 2295 743 4460 179 25 72 chr11 146948257 146949080 -1834392 - LTR49-int LTR ERV1 -3998 2333 1565 1857 139 10 36 chr11 146949080 146949389 -1834083 - AluJo SINE Alu -2 310 10 4460 179 25 72 chr11 146949389 146949575 -1833897 - LTR49-int LTR ERV1 -4766 1565 1372 516 119 16 198 chr11 146949586 146949712 -1833760 - LTR49-int LTR ERV1 -2939 1941 1288 268 159 23 0 chr11 146949712 146949756 -1833716 - tRNA-Glu-GAG tRNA tRNA -24 51 7 943 169 34 23 chr11 146949825 146950002 -1833470 - AluJb SINE Alu 0 312 134 1180 141 43 26 chr11 146950059 146950293 -1833179 - LTR49-int LTR ERV1 -5172 1159 922 1011 273 106 21 chr11 146951302 146951689 -1831783 + L2 LINE L2 2655 3126 -187 2291 109 0 6 chr11 146951689 146952001 -1831471 - AluSx SINE Alu -1 311 2 1011 273 106 21 chr11 146952001 146952205 -1831267 + L2 LINE L2 3126 3311 -2 625 261 62 74 chr11 146952459 146952642 -1830830 - MIR SINE MIR -1 261 80 2407 68 0 19 chr11 146952642 146952950 -1830522 + AluY SINE Alu 1 302 -9 625 261 62 74 chr11 146952950 146953023 -1830449 - MIR SINE MIR -182 80 8 336 292 14 62 chr11 146953456 146953492 -1829980 + L1MEd LINE L1 333 369 -5836 2234 103 27 0 chr11 146953492 146953784 -1829688 + AluSq SINE Alu 1 300 -13 336 292 14 62 chr11 146953784 146953891 -1829581 + L1MEd LINE L1 369 469 -5736 608 272 78 82 chr11 146954032 146954620 -1828852 + L1MEd LINE L1 682 1267 -4938 2377 103 0 0 chr11 146954653 146954963 -1828509 + AluSq SINE Alu 1 310 -3 324 278 46 37 chr11 146955156 146955372 -1828100 + L1MEd LINE L1 1541 1758 -4638 319 340 19 29 chr11 146955425 146955631 -1827841 - L2 LINE L2 -2409 905 702 650 309 79 83 chr11 146955656 146956008 -1827464 + LTR33 LTR ERVL 28 379 -142 2051 210 58 60 chr11 146956008 146956368 -1827104 + LTR40a LTR ERVL 1 361 -158 2299 107 0 3 chr11 146956368 146956666 -1826806 + AluSx SINE Alu 5 301 -11 2051 210 58 60 chr11 146956666 146956825 -1826647 + LTR40a LTR ERVL 361 519 0 650 309 79 83 chr11 146956825 146956968 -1826504 + LTR33 LTR ERVL 379 521 0 700 75 9 19 chr11 146956997 146957103 -1826369 + MLT2C2 LTR ERVL 1 105 -359 961 195 0 0 chr11 146957105 146957264 -1826208 - FRAM SINE Alu -6 170 12 1524 143 17 75 chr11 146957291 146957417 -1826055 + MLT2C1 LTR ERVL 122 254 -143 1538 171 32 14 chr11 146957417 146957697 -1825775 + AluJo SINE Alu 22 306 -6 1524 143 17 75 chr11 146957697 146957863 -1825609 + MLT2C1 LTR ERVL 254 397 0 246 105 0 0 chr11 146958512 146958550 -1824922 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 185 91 0 30 chr11 146958773 146958806 -1824666 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 189 324 87 59 chr11 146959175 146959288 -1824184 + L2 LINE L2 2230 2338 -976 2056 132 0 0 chr11 146959288 146959622 -1823850 + AluSx SINE Alu 1 334 0 189 324 87 59 chr11 146959622 146959758 -1823714 + L2 LINE L2 2338 2489 -825 1383 168 6 114 chr11 146959783 146959922 -1823550 - AluJo SINE Alu -4 298 214 1746 93 0 0 chr11 146959922 146960148 -1823324 + AluSc SINE Alu 82 307 -2 1383 168 6 114 chr11 146960148 146960342 -1823130 - AluJo SINE Alu -88 214 1 2347 63 0 0 chr11 146960548 146960832 -1822640 - AluY SINE Alu -27 284 1 253 311 63 80 chr11 146960902 146961188 -1822284 + L2 LINE L2 2824 3104 -168 747 202 0 0 chr11 146961414 146961538 -1821934 + FLAM_A SINE Alu 1 124 -9 9189 200 36 49 chr11 146961624 146962342 -1821130 - L1MB4 LINE L1 -14 6166 5440 2391 72 0 0 chr11 146962342 146962635 -1820837 - AluY SINE Alu -18 293 1 9189 200 36 49 chr11 146962635 146962951 -1820521 - L1MB4 LINE L1 -740 5440 5122 2225 131 3 3 chr11 146962951 146963263 -1820209 - AluSx SINE Alu 0 312 1 9189 200 36 49 chr11 146963263 146963407 -1820065 - L1MB4 LINE L1 -1058 5122 4978 1849 149 3 59 chr11 146963407 146963728 -1819744 - AluSx SINE Alu -9 303 1 9189 200 36 49 chr11 146963728 146965433 -1818039 - L1MB4 LINE L1 -1202 4978 3253 2145 130 13 0 chr11 146965433 146965740 -1817732 - AluSq SINE Alu -2 311 1 9189 200 36 49 chr11 146965740 146965781 -1817691 - L1MB4 LINE L1 -2927 3253 3213 1923 131 6 73 chr11 146965781 146966109 -1817363 - AluSx SINE Alu -6 306 1 9189 200 36 49 chr11 146966109 146966381 -1817091 - L1MB4 LINE L1 -2967 3213 3011 2426 88 0 0 chr11 146966381 146966687 -1816785 - AluSc SINE Alu -3 306 1 9189 200 36 49 chr11 146966687 146966967 -1816505 - L1MB4 LINE L1 -3169 3011 2729 621 122 37 0 chr11 146966967 146967049 -1816423 + AluJ/FLAM SINE Alu 10 94 -218 1179 292 111 53 chr11 146967217 146968236 -1815236 - L1MEd LINE L1 -4944 1175 98 224 253 0 67 chr11 146968423 146968498 -1814974 + A-rich Low_complexity Low_complexity 1 70 0 276 157 0 57 chr11 146968512 146968582 -1814890 + A-rich Low_complexity Low_complexity 1 66 0 38 120 0 0 chr11 146968781 146968831 -1814641 + AT_rich Low_complexity Low_complexity 1 50 0 385 95 43 52 chr11 146968847 146969086 -1814386 + T-rich Low_complexity Low_complexity 1 236 0 377 179 5 58 chr11 146969130 146969320 -1814152 + (TTG)n Simple_repeat Simple_repeat 1 180 0 234 170 67 42 chr11 146969323 146969488 -1813984 + (TATAA)n Simple_repeat Simple_repeat 2 170 0 27 0 0 0 chr11 146969771 146969798 -1813674 + AT_rich Low_complexity Low_complexity 1 27 0 222 253 0 0 chr11 146969862 146969961 -1813511 + A-rich Low_complexity Low_complexity 1 99 0 346 314 95 44 chr11 146970236 146970625 -1812847 + L1 LINE L1 2897 3305 -2841 198 103 0 0 chr11 146970689 146970718 -1812754 + (GAAAA)n Simple_repeat Simple_repeat 5 33 0 318 261 15 31 chr11 146970733 146970934 -1812538 + A-rich Low_complexity Low_complexity 1 197 0 28 29 0 0 chr11 146971257 146971292 -1812180 + AT_rich Low_complexity Low_complexity 1 35 0 424 222 0 0 chr11 146971312 146971438 -1812034 + A-rich Low_complexity Low_complexity 1 126 0 212 171 0 0 chr11 146971452 146971493 -1811979 + A-rich Low_complexity Low_complexity 1 41 0 222 284 0 37 chr11 146971563 146971644 -1811828 + C-rich Low_complexity Low_complexity 3 80 0 245 124 35 44 chr11 146971649 146971762 -1811710 + A-rich Low_complexity Low_complexity 2 113 0 242 193 0 60 chr11 146972648 146972731 -1810741 + A-rich Low_complexity Low_complexity 1 78 0 216 0 0 0 chr11 146972785 146972809 -1810663 + (A)n Simple_repeat Simple_repeat 1 24 0 24 0 0 0 chr11 146972809 146972833 -1810639 + AT_rich Low_complexity Low_complexity 1 24 0 379 216 9 26 chr11 146972863 146972979 -1810493 + GA-rich Low_complexity Low_complexity 4 117 0 292 402 0 0 chr11 146972992 146973079 -1810393 + A-rich Low_complexity Low_complexity 1 87 0 893 138 0 0 chr11 146973381 146973504 -1809968 + (C)n Simple_repeat Simple_repeat 1 123 0 255 259 17 0 chr11 146973504 146973562 -1809910 + CT-rich Low_complexity Low_complexity 5 63 0 188 197 0 70 chr11 146973750 146973821 -1809651 + A-rich Low_complexity Low_complexity 1 66 0 205 292 21 0 chr11 146973862 146973910 -1809562 + polypurine Low_complexity Low_complexity 2 50 0 261 139 0 0 chr11 146973911 146973954 -1809518 + (A)n Simple_repeat Simple_repeat 1 43 0 486 80 0 116 chr11 146974011 146974123 -1809349 + (T)n Simple_repeat Simple_repeat 1 99 0 87 11 0 0 chr11 146974123 146974217 -1809255 + AT_rich Low_complexity Low_complexity 1 94 0 188 115 20 81 chr11 146974217 146974365 -1809107 + (TAAA)n Simple_repeat Simple_repeat 3 141 0 316 209 11 53 chr11 146974383 146974570 -1808902 + A-rich Low_complexity Low_complexity 2 180 0 225 250 0 0 chr11 146974631 146974679 -1808793 + T-rich Low_complexity Low_complexity 3 50 0 222 62 0 0 chr11 146974951 146974983 -1808489 + (A)n Simple_repeat Simple_repeat 1 32 0 388 156 0 0 chr11 146975037 146975101 -1808371 + A-rich Low_complexity Low_complexity 1 64 0 23 77 0 0 chr11 146975102 146975141 -1808331 + AT_rich Low_complexity Low_complexity 1 39 0 344 375 0 0 chr11 146975193 146975297 -1808175 + A-rich Low_complexity Low_complexity 1 104 0 267 270 11 22 chr11 146975408 146975497 -1807975 + G-rich Low_complexity Low_complexity 2 89 0 21 80 0 0 chr11 146975497 146975522 -1807950 + GC_rich Low_complexity Low_complexity 1 25 0 268 103 58 35 chr11 146975522 146975609 -1807863 + (CGCGG)n Simple_repeat Simple_repeat 1 89 0 610 311 104 74 chr11 146975609 146976327 -1807145 - L1M2 LINE L1 -5519 1330 591 210 273 0 0 chr11 146977983 146978038 -1805434 + T-rich Low_complexity Low_complexity 1 55 0 21 36 0 0 chr11 146978103 146978131 -1805341 + AT_rich Low_complexity Low_complexity 1 28 0 1192 147 0 0 chr11 146978308 146978498 -1804974 + AluSg/x SINE Alu 121 310 -2 1761 173 0 10 chr11 146978546 146978852 -1804620 + AluJb SINE Alu 1 303 -9 23 54 0 0 chr11 146979891 146979928 -1803544 + AT_rich Low_complexity Low_complexity 1 37 0 31 82 0 0 chr11 146980036 146980085 -1803387 + AT_rich Low_complexity Low_complexity 1 49 0 284 172 0 35 chr11 146980308 146980366 -1803106 + AluY SINE Alu 87 142 -159 272 269 77 0 chr11 146980576 146980654 -1802818 - L2 LINE L2 0 3272 3189 1308 85 0 0 chr11 146980945 146981121 -1802351 + AluY SINE Alu 127 302 -9 233 228 0 0 chr11 146981122 146981179 -1802293 + L1M4 LINE L1 3722 3778 -2368 1247 166 10 0 chr11 146981298 146981497 -1801975 + AluSp SINE Alu 106 306 -7 1212 190 0 14 chr11 146981497 146981708 -1801764 + AluJo SINE Alu 82 289 -23 2611 59 0 0 chr11 146981745 146982049 -1801423 - AluY SINE Alu -7 304 1 1131 153 106 34 chr11 146982104 146982462 -1801010 + MSTB1 LTR MaLR 1 431 -1 2742 217 57 50 chr11 146982469 146983387 -1800085 - L1M4 LINE L1 -3434 3210 2300 2623 187 40 0 chr11 146983387 146983836 -1799636 - MLT1C LTR MaLR 0 467 1 2742 217 57 50 chr11 146983836 146984678 -1798794 - L1M4 LINE L1 -4344 2300 1465 2265 114 3 0 chr11 146984678 146984977 -1798495 - AluSx SINE Alu -12 300 1 2742 217 57 50 chr11 146984977 146985049 -1798423 - L1M4 LINE L1 -5179 1465 1395 1512 177 77 69 chr11 146985049 146985278 -1798194 - MLT1A1 LTR MaLR 0 365 130 2361 96 7 0 chr11 146985278 146985581 -1797891 - AluSp SINE Alu -8 305 1 1512 177 77 69 chr11 146985581 146985713 -1797759 - MLT1A1 LTR MaLR -235 130 1 2742 217 57 50 chr11 146985713 146986183 -1797289 - L1M4 LINE L1 -5249 1395 930 2324 110 0 0 chr11 146986183 146986491 -1796981 - AluY SINE Alu -3 308 1 2742 217 57 50 chr11 146986491 146987056 -1796416 - L1M4 LINE L1 -5714 930 159 2473 78 0 0 chr11 146987056 146987365 -1796107 - AluY SINE Alu -2 309 1 2742 217 57 50 chr11 146987365 146987523 -1795949 - L1M4 LINE L1 -6485 159 4 209 259 52 0 chr11 146988896 146988954 -1794518 + MIR SINE MIR 102 162 -100 945 124 0 16 chr11 146988972 146989101 -1794371 - FLAM_C SINE Alu -6 127 1 588 244 33 9 chr11 146989123 146989336 -1794136 - L1M4 LINE L1 -1052 5094 4877 1080 193 5 9 chr11 146989499 146989712 -1793760 + AluJo SINE Alu 88 299 -13 197 116 0 23 chr11 146989803 146989846 -1793626 + (GAAA)n Simple_repeat Simple_repeat 4 45 0 1874 159 79 70 chr11 146989886 146990083 -1793389 - MER63B DNA MER1_type -630 432 238 2284 107 7 0 chr11 146990083 146990391 -1793081 - AluSx SINE Alu -2 310 1 1874 159 79 70 chr11 146990391 146990621 -1792851 - MER63B DNA MER1_type -824 238 1 763 249 56 13 chr11 146990719 146990951 -1792521 + L1MC4a LINE L1 5350 5586 -590 1518 148 68 4 chr11 146990978 146991269 -1792203 + AluSq SINE Alu 4 311 0 312 234 124 44 chr11 146991283 146991509 -1791963 + L1MC4a LINE L1 5830 6073 -1735 310 224 0 0 chr11 146991636 146991694 -1791778 - L2 LINE L2 -6 3307 3250 505 313 143 20 chr11 146992357 146992657 -1790815 + L2 LINE L2 2974 3310 -3 910 261 133 65 chr11 146994002 146994522 -1788950 - MLT1K LTR MaLR -24 564 10 431 338 96 0 chr11 146994630 146994828 -1788644 - MIR SINE MIR -23 239 23 364 311 27 33 chr11 146994842 146995013 -1788459 - MER5A DNA MER1_type -2 187 7 251 205 26 26 chr11 146995237 146995315 -1788157 + Charlie7 DNA MER1_type 84 161 -2451 2055 97 0 37 chr11 146995317 146995617 -1787855 - AluSc SINE Alu -7 302 14 1632 99 5 0 chr11 146995825 146996038 -1787434 - AluSg/x SINE Alu -2 308 95 2522 84 0 0 chr11 146996267 146996577 -1786895 + AluSx SINE Alu 1 310 -2 2058 85 0 44 chr11 146996785 146997078 -1786394 + AluY SINE Alu 14 293 -18 1580 165 12 0 chr11 146997351 146997600 -1785872 - AluJb SINE Alu -15 297 46 483 285 62 36 chr11 146997869 146998086 -1785386 + L1M4 LINE L1 4655 4884 -1262 2169 127 0 0 chr11 146998086 146998385 -1785087 + AluSg1 SINE Alu 1 299 -10 483 285 62 36 chr11 146998385 146998476 -1784996 + L1M4 LINE L1 4884 4971 -1175 2367 97 0 6 chr11 146998505 146998816 -1784656 + AluSx SINE Alu 1 309 -3 967 215 100 117 chr11 146998905 146999416 -1784056 + L1MC5 LINE L1 6703 7204 -757 1901 162 13 0 chr11 146999416 146999724 -1783748 + AluJb SINE Alu 1 312 0 682 267 43 63 chr11 146999938 147000380 -1783092 + L1MC5 LINE L1 7292 7724 -237 356 310 8 31 chr11 147000390 147000519 -1782953 + MER34 LTR ERV1 1 126 -416 921 138 0 28 chr11 147000531 147000676 -1782796 + FLAM_C SINE Alu 1 141 -2 1262 214 112 14 chr11 147000678 147001034 -1782438 + LTR48B LTR ERV1 170 560 -84 192 40 0 0 chr11 147001096 147001121 -1782351 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2010 112 11 0 chr11 147001123 147001401 -1782071 - AluSx SINE Alu -31 281 1 2366 185 24 28 chr11 147001483 147001948 -1781524 - LTR32 LTR ERVL 0 471 9 4809 147 7 10 chr11 147002001 147002585 -1780887 + MER72 LTR ERV1 1 584 -138 2094 128 0 3 chr11 147002585 147002882 -1780590 - AluSx SINE Alu -15 297 2 4809 147 7 10 chr11 147002882 147003017 -1780455 + MER72 LTR ERV1 584 718 -4 1870 110 4 15 chr11 147004306 147004579 -1778893 + AluSx SINE Alu 7 276 -36 206 61 0 30 chr11 147004584 147004617 -1778855 + (CAA)n Simple_repeat Simple_repeat 1 32 0 235 246 16 0 chr11 147005008 147005069 -1778403 + (TTCA)n Simple_repeat Simple_repeat 1 62 0 1795 112 4 15 chr11 147005102 147005370 -1778102 - MER4E LTR ERV1 -5 774 510 1225 147 0 0 chr11 147005370 147005561 -1777911 + AluJb SINE Alu 118 308 -4 1873 164 0 0 chr11 147006746 147007056 -1776416 + AluJb SINE Alu 1 310 -2 1956 147 3 6 chr11 147007200 147007513 -1775959 - AluJb SINE Alu 0 312 1 215 382 38 23 chr11 147007861 147007992 -1775480 + L2 LINE L2 3140 3272 0 1656 177 0 10 chr11 147008383 147008677 -1774795 - AluJb SINE Alu -20 292 2 2035 130 3 0 chr11 147008904 147009199 -1774273 + AluSx SINE Alu 1 297 -10 261 0 0 0 chr11 147009199 147009228 -1774244 + (CA)n Simple_repeat Simple_repeat 2 30 0 299 305 0 0 chr11 147009237 147009332 -1774140 - MARNA DNA Mariner -370 216 122 216 368 73 0 chr11 147009342 147009478 -1773994 - MIR SINE MIR -12 250 105 498 280 0 21 chr11 147009595 147009738 -1773734 + MER91B DNA MER1_type 26 165 -25 2284 92 7 0 chr11 147009819 147010125 -1773347 - AluSq SINE Alu -5 308 1 2093 125 0 6 chr11 147010171 147010483 -1772989 - AluSg SINE Alu 0 310 1 1143 157 0 49 chr11 147010483 147010706 -1772766 - AluJo SINE Alu -16 296 85 337 216 0 14 chr11 147011102 147011176 -1772296 - L2 LINE L2 -204 3068 2996 275 281 83 16 chr11 147011301 147011422 -1772050 - L2 LINE L2 -508 2806 2678 272 387 0 0 chr11 147012186 147012297 -1771175 + (TG)n Simple_repeat Simple_repeat 1 111 0 1710 138 0 15 chr11 147013210 147013478 -1769994 - AluJb SINE Alu -15 297 34 468 250 175 4 chr11 147015356 147015457 -1768015 - L1MC4a LINE L1 -308 5813 5782 2096 104 0 29 chr11 147015457 147015766 -1767706 - AluSq SINE Alu -13 300 1 468 250 175 4 chr11 147015766 147015908 -1767564 - L1MC4a LINE L1 -339 5782 5666 438 315 41 32 chr11 147016225 147016452 -1767020 - MIR SINE MIR -3 259 19 251 400 21 0 chr11 147017333 147017473 -1765999 - L2 LINE L2 -485 2829 2687 1729 184 18 64 chr11 147017515 147017906 -1765566 + MLT1A2 LTR MaLR 2 374 0 327 370 54 42 chr11 147017912 147018026 -1765446 - L2 LINE L2 -33 3239 3128 1863 116 11 0 chr11 147018026 147018301 -1765171 + AluSq SINE Alu 26 303 -10 327 370 54 42 chr11 147018301 147018594 -1764878 - L2 LINE L2 -144 3128 2827 2369 93 0 0 chr11 147018704 147019014 -1764458 - AluSx SINE Alu -2 310 1 883 188 41 0 chr11 147019223 147019393 -1764079 + FRAM SINE Alu 1 175 -1 1957 259 40 22 chr11 147019482 147020034 -1763438 + MER68 LTR ERV1 1 562 0 187 293 85 18 chr11 147020043 147020207 -1763265 - L2 LINE L2 -1068 2246 2072 225 188 78 16 chr11 147020213 147020277 -1763195 - L2 LINE L2 -1387 1927 1860 2029 103 10 7 chr11 147020554 147020845 -1762627 + AluSq SINE Alu 1 292 -21 253 329 92 48 chr11 147020864 147021071 -1762401 - L2 LINE L2 -193 3079 2864 308 182 0 52 chr11 147021337 147021414 -1762058 + Tigger5 DNA MER2_type 2251 2323 0 333 183 110 12 chr11 147021464 147021546 -1761926 + Tigger5 DNA MER2_type 2234 2323 0 1496 176 60 11 chr11 147022024 147022308 -1761164 - AluJb SINE Alu -13 299 2 813 144 51 103 chr11 147026665 147026802 -1756670 + MER5A DNA MER1_type 5 131 -58 1945 155 0 16 chr11 147026802 147027119 -1756353 - AluJo SINE Alu 0 312 1 813 144 51 103 chr11 147027119 147027176 -1756296 + MER5A DNA MER1_type 131 189 0 2120 124 7 0 chr11 147029505 147029812 -1753660 + AluSx SINE Alu 1 309 -3 234 81 0 0 chr11 147029882 147029919 -1753553 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 517 279 50 15 chr11 147030148 147030368 -1753104 + MIR SINE MIR 33 260 -2 461 255 115 30 chr11 147030646 147030846 -1752626 - MIR SINE MIR -26 236 20 272 348 58 7 chr11 147031767 147031905 -1751567 + L2 LINE L2 2229 2373 -941 226 350 71 0 chr11 147032230 147032370 -1751102 - MER5B DNA MER1_type -4 174 25 427 324 21 14 chr11 147034158 147034303 -1749169 + L2 LINE L2 3168 3313 0 1006 214 43 0 chr11 147034338 147034548 -1748924 + MER20 DNA MER1_type 1 219 0 2016 130 7 0 chr11 147034640 147034933 -1748539 - AluSx SINE Alu -17 295 1 485 285 85 47 chr11 147035029 147035264 -1748208 - L1ME4a LINE L1 -4 6117 5874 1903 136 14 0 chr11 147035282 147035568 -1747904 - AluSx SINE Alu 0 312 23 1738 153 37 3 chr11 147036533 147036833 -1746639 - AluJo SINE Alu -2 310 1 2141 103 0 3 chr11 147037731 147038022 -1745450 - AluSg SINE Alu -20 290 1 1008 118 12 24 chr11 147038023 147038192 -1745280 - AluJb SINE Alu -10 302 136 1901 138 3 0 chr11 147039668 147039975 -1743497 - AluSx SINE Alu 0 308 1 1010 157 13 0 chr11 147039985 147040144 -1743328 - FAM SINE Alu -14 161 1 1372 183 3 64 chr11 147040320 147040631 -1742841 + AluJb SINE Alu 21 312 0 483 318 73 0 chr11 147040825 147041004 -1742468 + MIR SINE MIR 1 192 -70 319 243 90 56 chr11 147041114 147041258 -1742214 - L3b LINE CR1 -158 1425 1277 299 283 132 20 chr11 147041826 147041978 -1741494 - MIR SINE MIR -77 185 17 444 256 58 15 chr11 147041987 147042124 -1741348 - MER3 DNA MER1_type -26 183 41 487 256 131 25 chr11 147042375 147042535 -1740937 - MIR SINE MIR -67 195 19 679 157 122 0 chr11 147044576 147044691 -1738781 + FLAM_C SINE Alu 1 129 -4 283 370 99 0 chr11 147045312 147045474 -1737998 - MIR SINE MIR 0 262 85 236 254 0 123 chr11 147046626 147046748 -1736724 + MIR SINE MIR 23 129 -79 264 258 0 16 chr11 147046888 147046950 -1736522 - MIR3 SINE MIR -44 164 104 2346 81 0 3 chr11 147048009 147048319 -1735153 - AluY SINE Alu -2 309 1 198 0 0 0 chr11 147049871 147049893 -1733579 + (T)n Simple_repeat Simple_repeat 1 22 0 37 43 0 14 chr11 147050599 147050636 -1732836 + GC_rich Low_complexity Low_complexity 1 38 -30 252 59 0 0 chr11 147050636 147050670 -1732802 + (CAG)n Simple_repeat Simple_repeat 1 34 0 37 43 0 14 chr11 147050670 147050701 -1732771 + GC_rich Low_complexity Low_complexity 38 68 0 30 45 0 0 chr11 147050836 147050880 -1732592 + GC_rich Low_complexity Low_complexity 1 44 0 1969 142 0 0 chr11 147052739 147053028 -1730444 - AluSx SINE Alu -18 294 6 2046 110 10 13 chr11 147053245 147053554 -1729918 - AluSq SINE Alu -5 308 1 392 103 0 15 chr11 147053676 147053744 -1729728 + (CCA)n Simple_repeat Simple_repeat 2 68 0 1365 179 129 10 chr11 147054195 147054497 -1728975 + MER58B DNA MER1_type 4 341 0 351 281 16 31 chr11 147054869 147054997 -1728475 - MIR3 SINE MIR -6 202 77 204 213 0 107 chr11 147055099 147055138 -1728334 - MIR SINE MIR -18 244 215 2288 91 28 0 chr11 147055138 147055423 -1728049 - AluSc SINE Alu -16 293 1 204 213 0 107 chr11 147055423 147055458 -1728014 - MIR SINE MIR -47 215 178 661 286 68 5 chr11 147055460 147055666 -1727806 - MIR SINE MIR 0 262 44 2098 109 56 0 chr11 147056247 147056531 -1726941 - AluSg SINE Alu -10 300 1 245 148 66 0 chr11 147057092 147057153 -1726319 + (CTCG)n Simple_repeat Simple_repeat 4 68 0 183 224 61 0 chr11 147057905 147057954 -1725518 + MIR SINE MIR 187 238 -24 202 286 107 54 chr11 147058378 147058490 -1724982 + L3 LINE CR1 1446 1563 -14 23 0 0 0 chr11 147058494 147058517 -1724955 + AT_rich Low_complexity Low_complexity 1 23 0 593 173 0 63 chr11 147058528 147058655 -1724817 - FLAM_A SINE Alu -14 119 1 378 339 63 11 chr11 147058889 147059063 -1724409 - MIR3 SINE MIR -7 201 19 285 118 0 0 chr11 147060254 147060305 -1723167 + (CA)n Simple_repeat Simple_repeat 2 52 0 317 365 68 24 chr11 147060320 147060660 -1722812 - L2 LINE L2 -397 2917 2563 655 141 33 14 chr11 147060875 147061087 -1722385 + CT-rich Low_complexity Low_complexity 1 216 0 2163 127 10 0 chr11 147061093 147061400 -1722072 - AluSx SINE Alu -2 310 1 2481 133 54 2 chr11 147063600 147064006 -1719466 - MSTA LTR MaLR 0 428 2 184 317 28 62 chr11 147064365 147064510 -1718962 + MIR3 SINE MIR 6 145 -63 2598 78 0 0 chr11 147065910 147066218 -1717254 + AluSg SINE Alu 2 309 -1 384 266 32 0 chr11 147066766 147066860 -1716612 + MIR3 SINE MIR 76 172 -36 612 273 89 60 chr11 147067084 147067399 -1716073 - L2 LINE L2 -1 3312 2989 555 266 118 26 chr11 147067783 147068012 -1715460 - MIR SINE MIR -10 252 3 225 342 0 0 chr11 147068293 147068369 -1715103 + MIR SINE MIR 180 255 -7 407 209 146 0 chr11 147069532 147069642 -1713830 + MER63 DNA MER1_type 694 819 -241 305 125 156 0 chr11 147069706 147069770 -1713702 + MER63 DNA MER1_type 843 916 -144 1087 176 32 0 chr11 147069786 147069910 -1713562 + AluJo SINE Alu 1 134 -178 423 0 0 0 chr11 147069910 147069957 -1713515 + (CA)n Simple_repeat Simple_repeat 2 48 0 1087 176 32 0 chr11 147069957 147070020 -1713452 + AluJo SINE Alu 134 194 -118 2048 94 4 0 chr11 147070020 147070276 -1713196 + AluSp SINE Alu 40 296 -17 317 214 0 0 chr11 147070277 147070333 -1713139 + L1MC4 LINE L1 6648 6703 -1339 224 225 0 0 chr11 147070333 147070373 -1713099 + (TATG)n Simple_repeat Simple_repeat 2 41 0 440 189 0 0 chr11 147070373 147070463 -1713009 + MER63 DNA MER1_type 926 1015 -47 2473 84 0 0 chr11 147075126 147075424 -1708048 + AluSc SINE Alu 1 298 -11 304 300 106 38 chr11 147075625 147075862 -1707610 - L1 LINE L1 -2813 3333 3081 1570 167 89 4 chr11 147075868 147076149 -1707323 - AluJo SINE Alu -4 308 4 458 249 71 0 chr11 147076153 147076322 -1707150 - L1M4 LINE L1 -2623 3523 3343 1047 133 14 115 chr11 147076325 147076543 -1706929 - AluJo SINE Alu -116 196 1 345 294 49 49 chr11 147077421 147077605 -1705867 + MIR SINE MIR 7 190 -72 600 256 81 6 chr11 147078493 147078665 -1704807 + MIR SINE MIR 77 261 -1 235 325 38 0 chr11 147079145 147079225 -1704247 + MIR SINE MIR 66 148 -60 2335 91 7 0 chr11 147079376 147079672 -1703800 + AluSx SINE Alu 1 298 -14 816 159 23 0 chr11 147080653 147080785 -1702687 - AluJo SINE Alu -177 135 1 400 319 17 9 chr11 147081054 147081170 -1702302 - MIR SINE MIR -72 136 20 961 107 8 0 chr11 147081450 147081581 -1701891 - AluJ SINE Alu -4 308 177 888 147 0 0 chr11 147081585 147081714 -1701758 + AluJo SINE Alu 84 212 -100 1193 139 0 12 chr11 147081718 147081891 -1701581 - AluJ SINE Alu -141 171 1 276 327 27 0 chr11 147082385 147082495 -1700977 + MIR SINE MIR 123 235 -27 343 247 22 0 chr11 147082522 147082611 -1700861 + MIR SINE MIR 114 204 -58 2347 109 0 0 chr11 147082697 147083001 -1700471 - AluSq SINE Alu -9 304 1 211 266 85 43 chr11 147084249 147084343 -1699129 - L2 LINE L2 -38 3234 3137 248 235 71 51 chr11 147086151 147086249 -1697223 - L2 LINE L2 -31 3241 3142 343 233 78 10 chr11 147086691 147086794 -1696678 + L2 LINE L2 254 363 -2951 3229 268 177 35 chr11 147086823 147087110 -1696362 + L2 LINE L2 784 1029 -2243 2065 164 0 0 chr11 147087110 147087422 -1696050 + AluJb SINE Alu 1 312 0 3229 268 177 35 chr11 147087422 147088285 -1695187 + L2 LINE L2 1029 1768 -1504 2492 93 0 3 chr11 147088285 147088598 -1694874 - AluSq SINE Alu -1 312 1 3229 268 177 35 chr11 147088598 147089545 -1693927 + L2 LINE L2 1768 3261 -11 2386 92 3 10 chr11 147090774 147090909 -1692563 + AluSq SINE Alu 1 135 -178 2650 43 0 0 chr11 147090909 147091213 -1692259 + AluY SINE Alu 1 304 -7 2386 92 3 10 chr11 147091213 147091391 -1692081 + AluSq SINE Alu 135 312 -1 314 183 12 49 chr11 147092239 147092321 -1691151 + Charlie4a DNA MER1_type 40 118 -390 1131 239 56 27 chr11 147092321 147092545 -1690927 + Charlie4a DNA MER1_type 60 276 -1685 804 74 0 0 chr11 147092545 147092653 -1690819 + (TA)n Simple_repeat Simple_repeat 2 109 0 2082 128 0 10 chr11 147092653 147092943 -1690529 - AluSq SINE Alu -25 288 2 1131 239 56 27 chr11 147092943 147093090 -1690382 + Charlie4a DNA MER1_type 275 443 -65 336 83 0 0 chr11 147093967 147094015 -1689457 + (TTCA)n Simple_repeat Simple_repeat 1 48 0 515 316 33 28 chr11 147094077 147094292 -1689180 + MIR SINE MIR 9 224 -38 489 306 53 6 chr11 147094878 147095048 -1688424 - MIR3 SINE MIR -11 197 20 273 29 0 0 chr11 147095108 147095142 -1688330 + (TCC)n Simple_repeat Simple_repeat 2 35 0 413 349 105 0 chr11 147095162 147095371 -1688101 - MIR SINE MIR -25 237 7 375 280 38 8 chr11 147099210 147099342 -1684130 - L2 LINE L2 0 3272 3137 263 274 21 32 chr11 147099926 147100021 -1683451 + MIR3 SINE MIR 109 202 -6 193 264 0 38 chr11 147101741 147101794 -1681678 + L2 LINE L2 3250 3300 -13 277 328 31 31 chr11 147102112 147102307 -1681165 + L2 LINE L2 2485 2679 -635 385 359 34 5 chr11 147102480 147102686 -1680786 - MIR SINE MIR -1 261 50 332 326 111 39 chr11 147102868 147103333 -1680139 - L2 LINE L2 -222 3050 2526 261 335 69 29 chr11 147104425 147104598 -1678874 + MIR3 SINE MIR 24 203 -5 275 286 0 38 chr11 147105142 147105247 -1678225 - MIR SINE MIR -56 206 106 203 217 17 0 chr11 147106743 147106803 -1676669 + GA-rich Low_complexity Low_complexity 3 63 0 373 249 40 51 chr11 147106824 147106913 -1676559 + L1MC4a LINE L1 5747 5835 -1973 2501 128 21 3 chr11 147106913 147107296 -1676176 - MLT1B LTR MaLR 0 390 1 373 249 40 51 chr11 147107296 147107383 -1676089 + L1MC4a LINE L1 5835 5921 -1887 378 274 152 39 chr11 147107595 147107825 -1675647 + MIR SINE MIR 7 262 0 201 288 17 0 chr11 147109264 147109323 -1674149 + MIR SINE MIR 115 174 -88 235 360 92 12 chr11 147111733 147111897 -1671575 - L2 LINE L2 0 3272 3096 235 213 0 0 chr11 147112036 147112083 -1671389 - MIR SINE MIR -108 154 108 7192 131 42 8 chr11 147112208 147113398 -1670074 + Tigger3b DNA MER2_type 1 1231 0 8903 218 51 20 chr11 147113576 147116124 -1667348 - L1MCa LINE L1 -743 5683 3213 2073 108 0 0 chr11 147116124 147116384 -1667088 + AluSx SINE Alu 1 260 -52 282 56 0 0 chr11 147116384 147116420 -1667052 + (CAA)n Simple_repeat Simple_repeat 1 36 0 8903 218 51 20 chr11 147116420 147117175 -1666297 - L1MCa LINE L1 -3213 3213 2482 2137 113 0 39 chr11 147117175 147117486 -1665986 - AluSc SINE Alu -10 299 1 8903 218 51 20 chr11 147117486 147118841 -1664631 - L1MCa LINE L1 -3944 2482 943 6853 131 57 15 chr11 147118841 147119060 -1664412 - HSMAR2 DNA Mariner -1 1301 1093 1955 105 0 4 chr11 147119060 147119327 -1664145 - AluY SINE Alu -13 298 33 6853 131 57 15 chr11 147119327 147119737 -1663735 - HSMAR2 DNA Mariner -209 1093 702 2052 104 14 0 chr11 147119737 147120037 -1663435 - AluSq SINE Alu 0 304 1 6853 131 57 15 chr11 147120037 147120524 -1662948 - HSMAR2 DNA Mariner -600 702 136 1791 147 3 49 chr11 147120680 147120986 -1662486 - AluJb SINE Alu -18 294 3 2414 171 32 19 chr11 147121007 147121470 -1662002 - L1MCa LINE L1 -5472 954 486 400 143 0 112 chr11 147121465 147121563 -1661909 + L1PBb LINE L1 504 590 -5614 * 1427 218 17 10 chr11 147121612 147121906 -1661566 - AluJo SINE Alu -11 301 6 714 194 8 0 chr11 147121922 147122051 -1661421 - FLAM_C SINE Alu -3 130 1 2167 178 39 29 chr11 147122051 147122461 -1661011 - L1MCa LINE L1 -5992 434 21 9735 203 60 36 chr11 147122462 147123966 -1659506 - L1MD1 LINE L1 -350 6286 4821 1900 178 0 3 chr11 147123966 147124270 -1659202 + AluJo SINE Alu 1 303 -9 9735 203 60 36 chr11 147124270 147125176 -1658296 - L1MD1 LINE L1 -1815 4821 3939 2295 104 0 0 chr11 147125176 147125473 -1657999 + AluSg SINE Alu 1 297 -13 9735 203 60 36 chr11 147125473 147126382 -1657090 - L1MD1 LINE L1 -2697 3939 3054 1893 167 0 10 chr11 147126382 147126681 -1656791 - AluJo SINE Alu -16 296 1 9735 203 60 36 chr11 147126681 147128543 -1654929 - L1MD1 LINE L1 -3582 3054 995 1974 139 139 16 chr11 147128555 147128936 -1654536 + MSTA LTR MaLR 1 428 0 10415 125 6 26 chr11 147128938 147130541 -1652931 + MSTA-int LTR MaLR 3 1574 -6 1733 165 122 38 chr11 147130546 147130940 -1652532 + MSTA LTR MaLR 1 427 -1 2899 233 157 7 chr11 147130940 147131041 -1652431 - L1MD1 LINE L1 -5548 992 907 2150 127 26 34 chr11 147131041 147131419 -1652053 + THE1C LTR MaLR 1 375 0 2899 233 157 7 chr11 147131419 147132164 -1651308 - L1MD1 LINE L1 -5633 907 19 29 0 0 0 chr11 147132242 147132271 -1651201 + AT_rich Low_complexity Low_complexity 1 29 0 331 332 91 5 chr11 147132339 147132559 -1650913 - MIR SINE MIR -16 246 8 197 221 95 5 chr11 147133489 147133597 -1649875 + MIR SINE MIR 82 246 -16 297 122 0 0 chr11 147133606 147133647 -1649825 - MLT2B2 LTR ERVL 0 464 424 373 237 0 26 chr11 147133659 147133811 -1649661 + (TA)n Simple_repeat Simple_repeat 1 148 0 274 86 0 86 chr11 147133816 147133886 -1649586 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 341 43 21 0 chr11 147134023 147134070 -1649402 + (TCTA)n Simple_repeat Simple_repeat 4 51 0 1567 199 23 32 chr11 147134116 147134458 -1649014 - MLT2B2 LTR ERVL -176 339 1 778 149 0 109 chr11 147136172 147136264 -1647208 - MER5A DNA MER1_type -34 155 89 2309 97 0 0 chr11 147136264 147136554 -1646918 - AluSc SINE Alu -19 290 1 778 149 0 109 chr11 147136554 147136635 -1646837 - MER5A DNA MER1_type -100 89 1 242 293 56 23 chr11 147137850 147137981 -1645491 - MIR SINE MIR -71 137 5 261 0 0 0 chr11 147138256 147138285 -1645187 + (TG)n Simple_repeat Simple_repeat 2 30 0 269 330 85 21 chr11 147139248 147139436 -1644036 + MIR SINE MIR 46 245 -17 289 224 35 0 chr11 147139831 147139916 -1643556 + MIR SINE MIR 84 171 -91 2040 104 0 0 chr11 147139930 147140200 -1643272 - AluSx SINE Alu -42 270 1 3421 144 63 69 chr11 147140523 147141247 -1642225 + LTR8A LTR ERV1 1 720 -7 233 75 25 0 chr11 147142097 147142137 -1641335 + (TTTTTG)n Simple_repeat Simple_repeat 3 43 0 361 338 76 0 chr11 147143209 147143354 -1640118 - L2 LINE L2 0 3272 3117 338 169 0 14 chr11 147143431 147143502 -1639970 + (TA)n Simple_repeat Simple_repeat 1 70 0 319 115 51 64 chr11 147143514 147143592 -1639880 - LTR66 LTR ERVL -171 439 363 * 2200 118 142 6 chr11 147143556 147143922 -1639550 - MSTA LTR MaLR -12 416 1 287 200 33 0 chr11 147144077 147144137 -1639335 - MIR SINE MIR -181 81 20 740 156 37 37 chr11 147144149 147144284 -1639188 - AluJo SINE Alu -176 136 2 340 203 0 16 chr11 147144366 147144430 -1639042 - MER2 DNA MER2_type -1 344 282 * 502 261 51 0 chr11 147144405 147144543 -1638929 - MER8 DNA MER2_type -60 179 35 185 182 0 0 chr11 147146303 147146336 -1637136 - L3 LINE CR1 -4 1573 1541 343 326 88 70 chr11 147146431 147146716 -1636756 - L2 LINE L2 0 3272 2983 1071 65 0 29 chr11 147146886 147147025 -1636447 + AluSg/x SINE Alu 156 290 -20 216 0 0 0 chr11 147147248 147147272 -1636200 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4004 142 33 9 chr11 147148507 147149199 -1634273 - L1MA10 LINE L1 0 6334 5626 1854 134 13 36 chr11 147152388 147152694 -1630778 + AluJb SINE Alu 1 299 -13 320 177 53 18 chr11 147152943 147153056 -1630416 + (GTGTG)n Simple_repeat Simple_repeat 5 121 0 1513 178 86 55 chr11 147153656 147154038 -1629434 - MSTD LTR MaLR -2 394 1 213 39 0 0 chr11 147154156 147154182 -1629290 + (GA)n Simple_repeat Simple_repeat 2 27 0 716 158 17 0 chr11 147155380 147155500 -1627972 + MSTB LTR MaLR 1 122 -304 471 198 22 0 chr11 147155500 147155591 -1627881 + MSTB LTR MaLR 30 122 -304 2011 172 68 3 chr11 147155591 147155958 -1627514 + MSTB LTR MaLR 30 420 -6 2008 209 15 2 chr11 147158532 147158929 -1624543 + MER57A LTR ERV1 2 403 0 557 262 243 30 chr11 147159009 147159722 -1623750 - L2 LINE L2 -17 3296 2440 6614 86 1 40 chr11 147160093 147161095 -1622377 - L1PA10 LINE L1 -5 6163 5212 2341 93 0 0 chr11 147161095 147161395 -1622077 - AluSx SINE Alu -12 300 1 6614 86 1 40 chr11 147161395 147161844 -1621628 - L1PA10 LINE L1 -956 5212 4747 1285 126 39 4 chr11 147161945 147162175 -1621297 - L1PA10 LINE L1 -2764 3382 3145 5983 157 31 21 chr11 147162184 147163486 -1619986 - L1MC1 LINE L1 -2 6331 5015 1930 137 3 0 chr11 147164509 147164801 -1618671 + AluSx SINE Alu 1 293 -19 1013 268 69 26 chr11 147164801 147165148 -1618324 + MER93b LTR ERV1 12 373 0 194 202 45 169 chr11 147165477 147165566 -1617906 - MER5A DNA MER1_type -75 114 37 27 49 0 0 chr11 147165641 147165682 -1617790 + AT_rich Low_complexity Low_complexity 1 41 0 2310 77 3 0 chr11 147165711 147166008 -1617464 - AluSc SINE Alu -11 298 1 1520 153 3 51 chr11 147166563 147166791 -1616681 - L1MA4A LINE L1 -14 6289 6077 1574 145 37 54 chr11 147166791 147167088 -1616384 - AluJo SINE Alu -18 294 3 1520 153 3 51 chr11 147167088 147167153 -1616319 - L1MA4A LINE L1 -226 6077 6010 460 211 14 49 chr11 147169323 147169465 -1614007 + MER58C DNA MER1_type 79 215 0 312 267 73 33 chr11 147170478 147170628 -1612844 - MIR SINE MIR -105 157 2 299 263 157 7 chr11 147170632 147170774 -1612698 - MIR SINE MIR -3 205 29 342 173 0 0 chr11 147172495 147172570 -1610902 + CT-rich Low_complexity Low_complexity 3 77 0 218 243 136 39 chr11 147173202 147173305 -1610167 - MIR SINE MIR -69 139 27 1014 155 22 47 chr11 147173458 147173690 -1609782 + L1MA9 LINE L1 6060 6285 -27 1743 221 23 3 chr11 147173712 147174056 -1609416 + MLT1A1 LTR MaLR 11 361 -4 493 271 37 42 chr11 147174332 147174546 -1608926 - MIR SINE MIR -7 255 43 516 255 21 41 chr11 147175566 147175711 -1607761 - MIR SINE MIR -5 257 116 274 261 76 0 chr11 147176323 147176442 -1607030 - L2 LINE L2 -721 2593 2466 298 247 0 52 chr11 147176501 147176578 -1606894 + L2 LINE L2 3241 3313 0 190 398 11 0 chr11 147176587 147176680 -1606792 - MIR SINE MIR -75 133 40 399 284 34 23 chr11 147177101 147177243 -1606229 + MIR SINE MIR 40 185 -71 324 307 64 21 chr11 147177549 147177689 -1605783 - MIR SINE MIR -40 222 77 188 253 192 10 chr11 147177785 147177884 -1605588 + L2 LINE L2 3154 3270 -2 2587 143 5 47 chr11 147178314 147178378 -1605094 - Tigger2a DNA MER2_type -2279 429 364 1725 142 7 27 chr11 147178378 147178674 -1604798 - AluJo SINE Alu -22 290 1 2587 143 5 47 chr11 147178674 147179057 -1604415 - Tigger2a DNA MER2_type -2344 364 1 1649 152 102 63 chr11 147179819 147180200 -1603272 + MSTD LTR MaLR 1 396 0 389 320 49 70 chr11 147181004 147181197 -1602275 - LTR16C LTR ERVL -1 490 294 4405 44 13 2 chr11 147181197 147181746 -1601726 + L1PA5 LINE L1 5600 6154 0 389 320 49 70 chr11 147181746 147181768 -1601704 - LTR16C LTR ERVL -197 294 273 243 0 0 0 chr11 147181768 147181795 -1601677 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 389 320 49 70 chr11 147181795 147181862 -1601610 - LTR16C LTR ERVL -218 273 213 496 207 261 43 chr11 147182489 147182677 -1600795 + L2 LINE L2 3084 3312 -1 469 307 101 17 chr11 147184457 147184636 -1598836 + MIR SINE MIR 13 206 -56 342 209 88 68 chr11 147184695 147184843 -1598629 + L1ME4a LINE L1 5966 6116 -5 24 0 0 0 chr11 147184844 147184868 -1598604 + AT_rich Low_complexity Low_complexity 1 24 0 281 246 0 15 chr11 147184947 147185012 -1598460 + MIR SINE MIR 89 152 -110 279 133 0 0 chr11 147185090 147185135 -1598337 + (TA)n Simple_repeat Simple_repeat 2 46 0 358 340 78 13 chr11 147185242 147185395 -1598077 + L2 LINE L2 3109 3271 -1 14160 132 7 19 chr11 147185817 147186232 -1597240 - L1P5 LINE L1 -572 5584 5166 2307 99 0 0 chr11 147186232 147186534 -1596938 - AluSx SINE Alu -10 302 1 14160 132 7 19 chr11 147186534 147188587 -1594885 - L1P5 LINE L1 -990 5166 3145 1348 173 26 34 chr11 147188596 147188862 -1594610 - L1MC1 LINE L1 -2 6331 6068 320 217 65 33 chr11 147189852 147189944 -1593528 + L1P4 LINE L1 5490 5584 -581 454 305 55 25 chr11 147189959 147190195 -1593277 + L1MC4a LINE L1 5633 5875 -1933 365 299 77 115 chr11 147190373 147190764 -1592708 + L2 LINE L2 2896 3271 -1 180 296 0 0 chr11 147190777 147190831 -1592641 - MIR SINE MIR -177 85 32 2284 198 61 12 chr11 147191127 147191621 -1591851 + MER63 DNA MER1_type 504 1021 -40 327 250 125 24 chr11 147191638 147191806 -1591666 - MLT1K LTR MaLR -10 578 394 292 301 122 8 chr11 147191917 147192040 -1591432 - MLT1K LTR MaLR -373 215 79 333 217 43 0 chr11 147192711 147192780 -1590692 + MER5A DNA MER1_type 62 133 -56 401 271 96 50 chr11 147193560 147193778 -1589694 + MIR SINE MIR 20 247 -15 791 264 143 9 chr11 147193997 147194312 -1589160 - L1MEc LINE L1 -6002 394 38 182 336 57 49 chr11 147195500 147195622 -1587850 + L2 LINE L2 2995 3117 -155 765 201 78 6 chr11 147195628 147195807 -1587665 - MER20 DNA MER1_type -27 192 1 285 281 16 0 chr11 147196365 147196429 -1587043 - L2 LINE L2 0 3313 3249 943 155 7 7 chr11 147196658 147196813 -1586659 - MSTB LTR MaLR -271 155 1 2011 119 3 13 chr11 147197273 147197583 -1585889 + AluSx SINE Alu 5 311 -1 205 209 23 0 chr11 147197753 147197796 -1585676 + L3b LINE CR1 1536 1579 -4 504 284 111 72 chr11 147199108 147199577 -1583895 - L1ME3 LINE L1 -3 6167 5681 1353 183 10 7 chr11 147200171 147200461 -1583011 - AluJo SINE Alu -21 291 1 253 329 6 19 chr11 147201032 147201193 -1582279 + CT-rich Low_complexity Low_complexity 1 159 0 13256 82 12 8 chr11 147201610 147203455 -1580017 - HERVH LTR ERV1 -5170 2543 691 643 298 88 15 chr11 147203898 147204237 -1579235 - L1ME4a LINE L1 -237 5884 5521 204 158 0 0 chr11 147204419 147204457 -1579015 + CT-rich Low_complexity Low_complexity 2 39 0 230 234 0 0 chr11 147204739 147204786 -1578686 + L1MC4 LINE L1 6467 6513 -1529 688 199 89 138 chr11 147204793 147204833 -1578639 - MLT2B1 LTR ERVL -1 519 479 760 63 18 0 chr11 147204833 147204944 -1578528 + (TAGA)n Simple_repeat Simple_repeat 3 115 0 688 199 89 138 chr11 147204944 147205185 -1578287 - MLT2B1 LTR ERVL -41 479 146 182 250 0 0 chr11 147206140 147206184 -1577288 - MIR3 SINE MIR -6 202 159 500 216 28 84 chr11 147206649 147206862 -1576610 + AluJb SINE Alu 5 205 -107 1411 124 18 5 chr11 147207330 147207547 -1575925 + HERVH LTR ERV1 5600 5819 -1894 * 2536 71 50 13 chr11 147207545 147207923 -1575549 + HERVH LTR ERV1 7322 7713 0 2077 132 64 43 chr11 147207923 147208362 -1575110 + LTR7 LTR ERV1 1 448 -2 1099 41 0 34 chr11 147208370 147208517 -1574955 + LTR7 LTR ERV1 307 448 -2 186 271 107 49 chr11 147208790 147208912 -1574560 + L2 LINE L2 3138 3266 -6 492 337 36 6 chr11 147211459 147211625 -1571847 + MIR3 SINE MIR 19 189 -19 1966 107 10 7 chr11 147211625 147211916 -1571556 - AluSc SINE Alu -17 292 1 444 188 163 62 chr11 147212297 147212457 -1571015 + MIR3 SINE MIR 23 198 -10 343 249 25 11 chr11 147213080 147213189 -1570283 + MER57A LTR ERV1 296 403 0 185 214 45 169 chr11 147213518 147213607 -1569865 - MER5A DNA MER1_type -75 114 37 25 51 0 0 chr11 147213684 147213723 -1569749 + AT_rich Low_complexity Low_complexity 1 39 0 2256 84 3 0 chr11 147213752 147214049 -1569423 - AluSc SINE Alu -11 298 1 496 115 0 0 chr11 147214604 147214682 -1568790 - L1MA4A LINE L1 -14 6289 6212 207 0 0 0 chr11 147214786 147214809 -1568663 + (TCTA)n Simple_repeat Simple_repeat 2 24 0 371 316 121 10 chr11 147215524 147215730 -1567742 + MIR SINE MIR 2 230 -32 1273 157 9 14 chr11 147216185 147216402 -1567070 - Tigger3(Golem) DNA MER2_type -1 3028 2813 1276 93 19 29 chr11 147216806 147217011 -1566461 - AluSq SINE Alu -110 203 1 394 306 171 24 chr11 147217466 147217636 -1565836 - L3 LINE CR1 -28 1549 1355 1444 178 0 98 chr11 147217737 147217943 -1565529 - AluJo SINE Alu -8 294 130 2126 116 0 3 chr11 147217943 147218245 -1565227 + AluSx SINE Alu 1 301 -11 1444 178 0 98 chr11 147218245 147218364 -1565108 - AluJo SINE Alu -172 130 1 245 338 164 39 chr11 147218422 147218629 -1564843 - L3 LINE CR1 -461 1116 884 646 298 110 4 chr11 147220378 147220606 -1562866 + MIR SINE MIR 4 255 -7 271 286 0 0 chr11 147220730 147220793 -1562679 + L2 LINE L2 3250 3312 -1 259 261 58 0 chr11 147221083 147221152 -1562320 - MER91B DNA MER1_type -117 73 1 476 211 222 56 chr11 147221330 147221510 -1561962 - MER63A DNA MER1_type 0 210 1 198 0 0 0 chr11 147222016 147222038 -1561434 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 243 250 42 14 chr11 147222088 147222160 -1561312 - MIR SINE MIR -50 212 139 187 181 75 117 chr11 147222898 147222992 -1560480 - L2 LINE L2 0 3272 3183 596 239 34 0 chr11 147223059 147223176 -1560296 - L2 LINE L2 0 3313 3193 2415 232 47 20 chr11 147223241 147223905 -1559567 + L1ME3 LINE L1 4164 4845 -1301 640 278 103 31 chr11 147224024 147224344 -1559128 + L1ME3 LINE L1 5557 5899 -263 229 119 24 0 chr11 147224366 147224408 -1559064 - MADE1 DNA Mariner -37 43 1 231 88 0 0 chr11 147226074 147226108 -1557364 + (TCTA)n Simple_repeat Simple_repeat 1 34 0 1335 212 37 19 chr11 147226126 147226904 -1556568 + L1MC4 LINE L1 6676 7615 -427 290 342 40 40 chr11 147226909 147227039 -1556433 + L1MC4 LINE L1 7687 7819 -223 2692 16 3 0 chr11 147227039 147227348 -1556124 + AluY SINE Alu 1 310 -1 290 342 40 40 chr11 147227348 147227416 -1556056 + L1MC4 LINE L1 7818 7885 -157 799 208 20 35 chr11 147228795 147228997 -1554475 + L1ME LINE L1 5405 5603 -563 2090 91 7 10 chr11 147228997 147229293 -1554179 + AluSq SINE Alu 1 295 -18 2035 51 8 0 chr11 147229293 147229546 -1553926 + L1PA4 LINE L1 5900 6154 -1 1350 69 0 32 chr11 147229696 147229885 -1553587 + L1PA6 LINE L1 5972 6154 0 2153 89 10 0 chr11 147231128 147231419 -1552053 - AluSx SINE Alu -8 304 11 626 388 82 22 chr11 147232323 147232859 -1550613 + L2 LINE L2 2185 2752 -562 628 125 11 0 chr11 147232860 147232948 -1550524 + AluSg/x SINE Alu 203 291 -19 241 310 101 31 chr11 147232950 147233079 -1550393 + L2 LINE L2 2743 2880 -434 835 226 137 27 chr11 147233100 147233391 -1550081 + L1PA16 LINE L1 5838 6151 -3 2108 120 3 0 chr11 147233394 147233703 -1549769 + AluSx SINE Alu 1 310 -2 288 109 0 0 chr11 147233705 147233751 -1549721 + L1MB4 LINE L1 6133 6178 -2 1857 105 14 11 chr11 147234367 147234653 -1548819 - AluSx SINE Alu -16 296 10 180 344 166 26 chr11 147234708 147234859 -1548613 + L2 LINE L2 2882 3053 -219 254 225 38 25 chr11 147235729 147235809 -1547663 + MLT1L LTR MaLR 1 81 -534 1145 236 57 0 chr11 147235892 147236172 -1547300 - L1M4 LINE L1 -902 5244 4949 572 165 0 37 chr11 147236173 147236282 -1547190 - AluJb SINE Alu 0 312 208 550 271 35 14 chr11 147237305 147237449 -1546023 - MIR3 SINE MIR -23 185 39 432 338 14 7 chr11 147237482 147237624 -1545848 + MIR SINE MIR 7 149 -113 232 293 26 60 chr11 147237636 147237752 -1545720 - L2 LINE L2 -22 3291 3180 2264 104 0 0 chr11 147238754 147239062 -1544410 - AluSq SINE Alu -5 308 1 208 231 0 0 chr11 147239688 147239727 -1543745 - L2 LINE L2 -12 3260 3222 236 176 73 15 chr11 147239728 147239796 -1543676 - MIR SINE MIR -74 188 117 572 264 110 6 chr11 147241365 147241547 -1541925 + MIR SINE MIR 34 234 -28 423 255 49 0 chr11 147241807 147241909 -1541563 + MIR SINE MIR 86 192 -70 204 214 0 0 chr11 147242338 147242380 -1541092 + CT-rich Low_complexity Low_complexity 1 42 0 287 305 25 42 chr11 147242505 147242623 -1540849 - L2 LINE L2 -1 3312 3197 183 365 71 8 chr11 147242755 147242881 -1540591 + L2 LINE L2 3137 3270 -2 551 270 34 0 chr11 147243306 147243454 -1540018 + MIR3 SINE MIR 30 182 -26 252 236 67 22 chr11 147243733 147243822 -1539650 + MIR SINE MIR 110 202 -60 468 148 0 0 chr11 147243934 147244042 -1539430 + (G)n Simple_repeat Simple_repeat 1 108 0 606 159 0 0 chr11 147244076 147244221 -1539251 + G-rich Low_complexity Low_complexity 1 145 0 1020 111 0 0 chr11 147244222 147244402 -1539070 + (G)n Simple_repeat Simple_repeat 1 180 0 290 301 72 78 chr11 147244503 147244656 -1538816 - MIR SINE MIR -56 152 21 687 251 181 49 chr11 147244742 147245212 -1538260 + MLT1H LTR MaLR 8 539 -10 207 0 0 0 chr11 147245268 147245291 -1538181 + (CA)n Simple_repeat Simple_repeat 1 23 0 2070 79 23 13 chr11 147245843 147246146 -1537326 - AluY SINE Alu -5 306 1 795 234 41 23 chr11 147246487 147246705 -1536767 - MER58A DNA MER1_type 0 224 3 383 263 0 0 chr11 147246843 147246923 -1536549 - MIR3 SINE MIR -48 160 81 248 328 113 0 chr11 147247075 147247201 -1536271 - MIR SINE MIR -63 145 5 376 336 15 8 chr11 147248519 147248650 -1534822 - L2 LINE L2 0 3272 3141 762 232 18 0 chr11 147249078 147249242 -1534230 + L1MEc LINE L1 577 743 -5653 3920 238 67 39 chr11 147249247 147250061 -1533411 + L1MEc LINE L1 1313 2103 -4112 2340 94 0 0 chr11 147250061 147250368 -1533104 + AluY SINE Alu 1 307 -4 3920 238 67 39 chr11 147250368 147251429 -1532043 + L1MEc LINE L1 2103 3133 -3082 2188 105 0 10 chr11 147251429 147251742 -1531730 + AluY SINE Alu 1 310 -1 3920 238 67 39 chr11 147251742 147251888 -1531584 + L1MEc LINE L1 3133 3273 -2942 426 20 0 0 chr11 147251888 147251939 -1531533 + (GA)n Simple_repeat Simple_repeat 2 52 0 3920 238 67 39 chr11 147251939 147252177 -1531295 + L1MEc LINE L1 3273 3592 -2623 1598 153 3 21 chr11 147252178 147252465 -1531007 + AluJo SINE Alu 1 282 -30 222 37 0 0 chr11 147252472 147252499 -1530973 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1444 231 86 20 chr11 147252548 147253046 -1530426 + L1MEc LINE L1 4386 4916 -1299 21 0 0 0 chr11 147253067 147253088 -1530384 + AT_rich Low_complexity Low_complexity 1 21 0 1873 128 3 3 chr11 147253096 147253378 -1530094 - AluSx SINE Alu -30 282 1 3021 175 40 49 chr11 147253390 147254047 -1529425 - L1MC2 LINE L1 -10 6334 5684 1472 216 51 90 chr11 147254052 147254543 -1528929 - L1MCa LINE L1 -5667 759 288 750 287 185 13 chr11 147255027 147255421 -1528051 + LTR16B LTR ERVL 3 464 0 2302 319 74 34 chr11 147255493 147256663 -1526809 + HERV16 LTR ERVL 91 1318 -3678 734 162 87 12 chr11 147256663 147256836 -1526636 + MER53 DNA DNA 3 188 -1 2302 319 74 34 chr11 147256836 147256939 -1526533 + HERV16 LTR ERVL 1318 1415 -3581 5391 154 18 22 chr11 147256956 147257712 -1525760 + L1MA4A LINE L1 4168 4925 -1378 1998 152 7 0 chr11 147257712 147258022 -1525450 - AluSx SINE Alu 0 312 1 5391 154 18 22 chr11 147258022 147259221 -1524251 + L1MA4A LINE L1 4925 6121 -182 566 167 0 0 chr11 147259222 147259318 -1524154 + L1MA4A LINE L1 6184 6279 -24 2045 327 66 42 chr11 147259381 147259677 -1523795 + HERV16 LTR ERVL 1688 1975 -3789 2039 162 124 21 chr11 147259677 147260065 -1523407 + MSTA LTR MaLR 1 428 0 2045 327 66 42 chr11 147260065 147260666 -1522806 + HERV16 LTR ERVL 1975 2560 -3204 1086 163 6 12 chr11 147260666 147260838 -1522634 + FAM SINE Alu 1 171 -4 2045 327 66 42 chr11 147260838 147261730 -1521742 + HERV16 LTR ERVL 2560 3556 -2208 311 54 0 0 chr11 147261747 147261784 -1521688 + MLT1D LTR MaLR 454 490 -15 1001 204 166 48 chr11 147261806 147262120 -1521352 + MLT1G LTR MaLR 240 590 0 386 301 35 23 chr11 147262146 147262319 -1521153 + L1ME4a LINE L1 5715 5889 -232 216 294 99 104 chr11 147263328 147263539 -1519933 - L2 LINE L2 -34 3238 3029 435 318 168 47 chr11 147264548 147264563 -1518909 - L2 LINE L2 -4 3268 3256 15606 155 18 8 chr11 147264563 147267026 -1516446 + Tigger7 DNA MER2_type 2 2487 0 435 318 168 47 chr11 147267026 147267331 -1516141 - L2 LINE L2 -16 3256 2909 2188 235 78 6 chr11 147267491 147268039 -1515433 + MLT1E LTR MaLR 4 591 -2 340 211 14 0 chr11 147268719 147268790 -1514682 - L1ME LINE L1 -467 5654 5583 2394 74 0 16 chr11 147269260 147269656 -1513816 - AluY SINE Alu 0 311 1 247 262 95 36 chr11 147270086 147270170 -1513302 - L2 LINE L2 -2 3311 3223 359 298 16 8 chr11 147270810 147270934 -1512538 - MIR3 SINE MIR -3 205 81 352 306 137 59 chr11 147270968 147271377 -1512095 - L2 LINE L2 -1 3271 2831 4733 181 25 6 chr11 147272851 147274132 -1509340 + L1MB7 LINE L1 4843 6149 -35 281 311 0 0 chr11 147274252 147274313 -1509159 + L2 LINE L2 3212 3272 0 243 216 0 0 chr11 147274546 147274597 -1508875 + L2 LINE L2 3263 3313 0 1671 178 7 14 chr11 147275486 147275778 -1507694 - AluJo SINE Alu -22 290 1 1742 176 7 26 chr11 147275913 147276220 -1507252 - AluJo SINE Alu -11 301 1 799 224 65 15 chr11 147276253 147276454 -1507018 - MIR SINE MIR -50 212 2 1192 156 0 0 chr11 147276556 147276736 -1506736 + AluJb SINE Alu 1 180 -132 2406 72 3 0 chr11 147327320 147327627 -1455845 + AluY SINE Alu 1 308 -3 737 174 0 8 chr11 147327635 147327767 -1455705 + L1 LINE L1 4760 4890 -1256 189 0 0 0 chr11 147327915 147327936 -1455536 + (T)n Simple_repeat Simple_repeat 1 21 0 575 186 50 56 chr11 147327970 147328131 -1455341 - MIR SINE MIR -23 239 80 32 0 0 0 chr11 147328448 147328480 -1454992 + AT_rich Low_complexity Low_complexity 1 32 0 284 319 223 0 chr11 147328669 147328826 -1454646 + MIR3 SINE MIR 14 205 -3 426 306 49 7 chr11 147330332 147330476 -1452996 + MIR SINE MIR 40 189 -73 455 294 70 68 chr11 147330656 147331143 -1452329 + LTR67 LTR ERVL 2 489 -68 312 214 68 17 chr11 147331147 147331264 -1452208 - L1MC4 LINE L1 -4 8038 7916 194 172 31 0 chr11 147331306 147331370 -1452102 + T-rich Low_complexity Low_complexity 3 68 0 380 234 14 64 chr11 147331395 147331536 -1451936 - L1MC5 LINE L1 -178 7783 7650 183 225 71 166 chr11 147332487 147332656 -1450816 - L2 LINE L2 -561 2753 2601 293 154 0 0 chr11 147332880 147332932 -1450540 + MER4-int LTR ERV1 1111 1162 -5436 211 189 0 0 chr11 147332932 147332969 -1450503 + (TG)n Simple_repeat Simple_repeat 1 37 0 1665 150 41 39 chr11 147333408 147333795 -1449677 - L1MB8 LINE L1 0 6178 5791 607 188 68 0 chr11 147334583 147334716 -1448756 - L1MA9 LINE L1 -562 5772 5631 2589 140 49 43 chr11 147334719 147335153 -1448319 + L1MA9 LINE L1 5802 6241 -71 231 36 0 0 chr11 147335153 147335181 -1448291 + (TG)n Simple_repeat Simple_repeat 2 29 0 2589 140 49 43 chr11 147335181 147335252 -1448220 + L1MA9 LINE L1 6241 6310 -2 223 333 121 24 chr11 147335604 147335853 -1447619 - L2 LINE L2 -831 2483 2211 206 345 23 11 chr11 147336329 147336416 -1447056 - L2 LINE L2 -16 3256 3169 299 284 12 29 chr11 147336484 147336592 -1446880 + MER5A DNA MER1_type 49 166 -23 236 365 61 0 chr11 147336494 147336609 -1446863 - MER5A DNA MER1_type -56 133 12 * 186 351 126 40 chr11 147337706 147337880 -1445592 + MIR3 SINE MIR 16 204 -4 415 239 275 7 chr11 147337995 147338133 -1445339 + MER5A DNA MER1_type 9 183 -6 200 347 64 17 chr11 147338235 147338420 -1445052 + L2 LINE L2 2799 2999 -314 252 236 36 0 chr11 147338423 147338478 -1444994 - L2 LINE L2 -2 3311 3255 211 327 128 82 chr11 147338504 147338761 -1444711 + L2 LINE L2 3003 3271 -1 381 257 0 0 chr11 147340075 147340254 -1443218 + (CA)n Simple_repeat Simple_repeat 1 179 0 258 268 0 0 chr11 147340293 147340416 -1443056 + (CA)n Simple_repeat Simple_repeat 2 124 0 239 192 77 64 chr11 147341598 147341676 -1441796 + MIR SINE MIR 169 247 -15 243 0 0 0 chr11 147341684 147341711 -1441761 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 534 284 129 4 chr11 147342337 147342569 -1440903 + MIR SINE MIR 1 261 -1 1834 189 23 40 chr11 147343127 147343524 -1439948 + MLT1B LTR MaLR 1 390 0 1936 137 68 6 chr11 147344735 147345148 -1438324 - MER61D LTR ERV1 0 501 1 422 287 40 40 chr11 147345333 147345507 -1437965 + MIR SINE MIR 30 203 -59 245 210 105 99 chr11 147348205 147348367 -1435105 + MER103 DNA DNA 3 165 -1 289 327 47 25 chr11 147350107 147350268 -1433204 - MIR SINE MIR -65 143 2 184 225 127 70 chr11 147352243 147352314 -1431158 + MIR SINE MIR 44 118 -90 228 277 77 0 chr11 147352378 147352443 -1431029 + MIR3 SINE MIR 111 180 -28 229 339 34 25 chr11 147353181 147353299 -1430173 + MIR SINE MIR 9 127 -81 3441 58 7 7 chr11 147353321 147353768 -1429704 + LTR7 LTR ERV1 2 448 -2 16362 100 32 19 chr11 147353770 147356623 -1426849 + HERVH LTR ERV1 1 2995 -4718 958 140 7 0 chr11 147356602 147356752 -1426720 + HERVH LTR ERV1 3140 3290 -4423 * 3396 109 6 8 chr11 147356742 147357245 -1426227 + HERVH LTR ERV1 3492 3993 -3720 4455 139 3 1 chr11 147357247 147357908 -1425564 + HERVH LTR ERV1 4488 5149 -2564 1424 134 19 0 chr11 147357909 147358125 -1425347 + HERVH LTR ERV1 5600 5819 -1894 * 2494 84 45 13 chr11 147358123 147358503 -1424969 + HERVH LTR ERV1 7322 7713 0 3467 67 0 7 chr11 147358503 147358954 -1424518 + LTR7 LTR ERV1 1 448 -2 248 230 40 80 chr11 147358956 147359029 -1424443 + MIR SINE MIR 166 236 -26 2642 148 29 12 chr11 147359029 147359448 -1424024 - MSTB LTR MaLR 0 426 1 248 230 40 80 chr11 147359448 147359474 -1423998 + MIR SINE MIR 235 261 -1 279 79 0 0 chr11 147359523 147359561 -1423911 + (TA)n Simple_repeat Simple_repeat 1 38 0 478 211 9 0 chr11 147359699 147359808 -1423664 - L1M4 LINE L1 -3115 3529 3420 1863 228 135 35 chr11 147359911 147360514 -1422958 - L1M4 LINE L1 -4846 1696 1002 1975 152 0 3 chr11 147360514 147360811 -1422661 + AluJb SINE Alu 1 296 -16 1863 228 135 35 chr11 147360811 147360954 -1422518 - L1M4 LINE L1 -5540 1002 875 260 300 6 94 chr11 147361018 147361178 -1422294 - L1M4 LINE L1 -5675 867 722 244 325 24 24 chr11 147361567 147361736 -1421736 - L1M4 LINE L1 -6357 185 17 312 27 0 0 chr11 147361950 147361987 -1421485 + (TG)n Simple_repeat Simple_repeat 2 38 0 548 273 47 29 chr11 147362250 147362422 -1421050 + MER5B DNA MER1_type 4 178 0 2505 228 50 34 chr11 147362503 147363047 -1420425 + L1ME1 LINE L1 5096 5630 -554 2432 75 0 13 chr11 147363047 147363355 -1420117 + AluY SINE Alu 1 304 -7 2505 228 50 34 chr11 147363355 147363855 -1419617 + L1ME1 LINE L1 5630 6184 0 277 271 0 0 chr11 147363864 147363934 -1419538 + MIR SINE MIR 180 249 -13 994 256 117 83 chr11 147364615 147365181 -1418291 - MLT1G LTR MaLR -3 587 3 25 31 0 0 chr11 147365836 147365868 -1417604 + AT_rich Low_complexity Low_complexity 1 32 0 693 157 19 0 chr11 147366466 147366574 -1416898 - AluJo/FRAM SINE Alu -24 288 179 1157 179 31 22 chr11 147366576 147366682 -1416790 - AluJo SINE Alu -81 231 127 207 88 0 0 chr11 147366682 147366716 -1416756 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 1157 179 31 22 chr11 147366716 147366838 -1416634 - AluJo SINE Alu -185 127 1 1371 260 94 35 chr11 147367227 147367715 -1415757 + MLT1G1 LTR MaLR 79 595 0 2335 219 58 12 chr11 147367715 147368321 -1415151 + L1ME2 LINE L1 5322 5955 -209 350 233 0 14 chr11 147368322 147368395 -1415077 - MIR SINE MIR -186 76 5 549 193 134 29 chr11 147368600 147368771 -1414701 - L1ME2 LINE L1 -10 6154 5966 * 1882 247 61 57 chr11 147368766 147369775 -1413697 + L1MEc LINE L1 714 1727 -4669 * 2213 239 92 16 chr11 147369774 147370568 -1412904 + L1MEc LINE L1 2234 3087 -3128 220 171 0 0 chr11 147371773 147371808 -1411664 + polypurine Low_complexity Low_complexity 3 37 0 628 256 8 0 chr11 147373032 147373165 -1410307 + MER58B DNA MER1_type 206 339 -2 890 244 51 28 chr11 147373391 147373608 -1409864 - MIR SINE MIR -22 240 19 769 198 62 6 chr11 147374310 147374487 -1408985 + L1MA9 LINE L1 6061 6247 -65 657 75 21 0 chr11 147374587 147374681 -1408791 + HERVH LTR ERV1 2309 2404 -5309 275 301 108 36 chr11 147374739 147374905 -1408567 - L3 LINE CR1 -259 1318 1141 1067 228 120 131 chr11 147375051 147375653 -1407819 + MLT1G LTR MaLR 1 590 0 593 226 84 7 chr11 147375913 147376068 -1407404 + MLT1B LTR MaLR 1 167 -223 1004 183 6 0 chr11 147376150 147376319 -1407153 + MLT1B LTR MaLR 214 383 -7 215 103 26 0 chr11 147376327 147376366 -1407106 + (TA)n Simple_repeat Simple_repeat 1 40 0 183 269 111 65 chr11 147376591 147376699 -1406773 - L3 LINE CR1 -1 1576 1464 257 371 0 0 chr11 147376881 147377005 -1406467 + L1ME LINE L1 5644 5767 -354 349 319 34 0 chr11 147378106 147378225 -1405247 + L3 LINE CR1 812 934 -643 489 191 61 0 chr11 147378226 147378341 -1405131 + L1ME2 LINE L1 6016 6137 -27 644 244 107 12 chr11 147378572 147378740 -1404732 - MER63A DNA MER1_type 0 210 27 1615 105 50 0 chr11 147379604 147379823 -1403649 + MER30 DNA MER1_type 1 230 0 530 261 77 69 chr11 147380051 147380546 -1402926 + L1MEc LINE L1 972 1413 -4983 244 305 0 60 chr11 147380579 147380695 -1402777 + MIR SINE MIR 47 154 -68 728 197 92 0 chr11 147381529 147381681 -1401791 - MLT1B LTR MaLR -7 383 218 399 21 0 0 chr11 147382157 147382205 -1401267 + (CA)n Simple_repeat Simple_repeat 2 49 0 1165 228 26 8 chr11 147385179 147385447 -1398025 - L1MD2 LINE L1 -425 5934 5662 672 189 211 46 chr11 147385463 147385638 -1397834 - MER20 DNA MER1_type -5 214 11 1786 190 76 6 chr11 147385648 147386115 -1397357 - L1MD2 LINE L1 -703 5656 5161 288 0 0 0 chr11 147386115 147386147 -1397325 + (TG)n Simple_repeat Simple_repeat 1 32 0 1929 221 34 18 chr11 147388164 147388858 -1394614 - L1M3c LINE L1 -4748 2350 1629 756 262 24 140 chr11 147388918 147389051 -1394421 - L1M3c LINE L1 -6725 443 296 2038 92 7 33 chr11 147389051 147389354 -1394118 + AluSg SINE Alu 1 295 -15 756 262 24 140 chr11 147389354 147389554 -1393918 - L1M3c LINE L1 -6872 296 74 219 103 0 0 chr11 147389554 147389593 -1393879 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 1932 108 37 0 chr11 147389593 147389861 -1393611 - AluSg SINE Alu -32 278 1 756 262 24 140 chr11 147389861 147390025 -1393447 - L1M3c LINE L1 -7092 76 2 * 1028 209 46 26 chr11 147390009 147390315 -1393157 - L1M4 LINE L1 -3222 2924 2613 458 20 0 0 chr11 147390706 147390755 -1392717 - AluSc SINE Alu -107 202 154 2215 245 38 45 chr11 147391323 147392041 -1391431 + L1ME1 LINE L1 49 761 -5635 1842 252 53 27 chr11 147392024 147393216 -1390256 + L1ME1 LINE L1 3139 4415 -1800 * 479 164 0 19 chr11 147393285 147393389 -1390083 + ERVL LTR ERVL 5456 5557 -207 655 219 30 18 chr11 147393391 147393555 -1389917 + ERVL LTR ERVL 5502 5667 -97 1567 228 22 31 chr11 147393673 147394033 -1389439 + MLT1A2 LTR MaLR 18 374 0 953 198 8 115 chr11 147394040 147394293 -1389179 + MLT2D LTR ERVL 189 414 0 2223 225 79 19 chr11 147394293 147394867 -1388605 + L1ME1 LINE L1 5628 6379 -2 242 281 18 0 chr11 147394879 147394936 -1388536 - L2 LINE L2 -69 3203 3146 311 231 197 41 chr11 147394943 147395090 -1388382 - MIR SINE MIR -8 254 85 183 271 0 0 chr11 147395328 147395398 -1388074 + GA-rich Low_complexity Low_complexity 3 72 0 1717 178 93 9 chr11 147396055 147396398 -1387074 + MLT1A2 LTR MaLR 1 372 -2 402 333 31 19 chr11 147396474 147396636 -1386836 + MIR3 SINE MIR 21 184 -24 6376 127 44 33 chr11 147396756 147398209 -1385263 - L1MA5A LINE L1 0 6297 4827 1110 136 0 71 chr11 147398326 147398524 -1384948 - AluSq SINE Alu -129 184 1 2038 266 63 56 chr11 147398526 147398837 -1384635 - L1MEc LINE L1 -3396 2819 2512 328 116 0 0 chr11 147398837 147398880 -1384592 + tRNA-Ile-ATT tRNA tRNA 1 43 -34 2038 266 63 56 chr11 147398880 147399940 -1383532 - L1MEc LINE L1 -3703 2512 1450 261 0 0 0 chr11 147400040 147400069 -1383403 + (A)n Simple_repeat Simple_repeat 1 29 0 271 183 33 0 chr11 147400390 147400450 -1383022 - Charlie2a DNA MER1_type -1320 1542 1481 644 287 77 31 chr11 147400635 147400896 -1382576 - Charlie2a DNA MER1_type -2477 305 33 459 242 79 36 chr11 147401251 147401416 -1382056 - MIR3 SINE MIR -3 205 34 1406 173 43 133 chr11 147401962 147402361 -1381111 - MLT1A1 LTR MaLR 0 365 3 282 245 69 20 chr11 147402798 147402900 -1380572 + MIR SINE MIR 129 235 -27 25 0 0 0 chr11 147403780 147403805 -1379667 + AT_rich Low_complexity Low_complexity 1 25 0 41 58 0 0 chr11 147404522 147404591 -1378881 + AT_rich Low_complexity Low_complexity 1 69 0 1177 206 7 57 chr11 147405239 147405521 -1377951 - MLT1A1 LTR MaLR -2 363 96 2162 207 44 67 chr11 147405521 147406131 -1377341 - LTR9 LTR ERV1 0 612 17 523 170 11 0 chr11 147406141 147406235 -1377237 - MLT1A1 LTR MaLR -266 99 5 384 40 0 0 chr11 147406686 147406736 -1376736 + (TG)n Simple_repeat Simple_repeat 1 50 0 1063 230 129 35 chr11 147406806 147407241 -1376231 - LTR33A LTR ERVL -44 479 4 2853 166 22 20 chr11 147408120 147408621 -1374851 + MLT2B3 LTR ERVL 1 502 -52 714 69 9 17 chr11 147408621 147408737 -1374735 + (TCTA)n Simple_repeat Simple_repeat 3 117 0 180 0 0 0 chr11 147410343 147410363 -1373109 + (CAAAAA)n Simple_repeat Simple_repeat 2 21 0 791 188 8 118 chr11 147411150 147411395 -1372077 - MER20 DNA MER1_type 0 219 2 197 339 0 15 chr11 147412270 147412335 -1371137 - L2 LINE L2 -19 3253 3190 296 338 42 81 chr11 147412651 147413009 -1370463 - L2 LINE L2 -3 3269 2926 1756 234 31 46 chr11 147413560 147413640 -1369832 - MER110 LTR ERV1 -20 471 391 2330 84 0 7 chr11 147413640 147413938 -1369534 - AluSg SINE Alu -14 296 1 1756 234 31 46 chr11 147413938 147414335 -1369137 - MER110 LTR ERV1 -100 391 1 579 159 79 24 chr11 147414740 147414866 -1368606 + FLAM_C SINE Alu 1 133 0 2868 131 71 60 chr11 147414988 147415552 -1367920 + MER4B LTR ERV1 1 570 -40 2513 83 3 0 chr11 147415659 147415971 -1367501 + AluSp SINE Alu 1 313 0 357 24 0 0 chr11 147416184 147416226 -1367246 + (A)n Simple_repeat Simple_repeat 1 42 0 467 206 10 20 chr11 147416262 147416364 -1367108 + MLT1H LTR MaLR 57 157 -392 189 107 0 0 chr11 147418401 147418429 -1365043 + (A)n Simple_repeat Simple_repeat 1 28 0 803 237 215 43 chr11 147418465 147418883 -1364589 + MLT1H LTR MaLR 57 546 -3 665 273 35 15 chr11 147419153 147419351 -1364121 + MIR SINE MIR 2 203 -59 261 311 135 33 chr11 147420828 147421072 -1362400 + L2 LINE L2 2826 3094 -178 233 245 0 0 chr11 147423457 147423510 -1359962 - L2 LINE L2 -61 3252 3200 506 299 128 35 chr11 147423808 147424152 -1359320 + L3 LINE CR1 1201 1576 -1 629 246 52 39 chr11 147426350 147426576 -1356896 + MIR SINE MIR 28 256 -6 257 254 42 0 chr11 147428093 147428164 -1355308 + L2 LINE L2 3227 3300 -13 338 287 15 37 chr11 147429998 147430134 -1353338 + MIR SINE MIR 47 179 -83 227 293 121 35 chr11 147430430 147430546 -1352926 + L2 LINE L2 3138 3263 -9 411 306 57 57 chr11 147431225 147431490 -1351982 - L2 LINE L2 -183 3089 2825 763 274 46 8 chr11 147431598 147431835 -1351637 - MIR SINE MIR 0 262 17 187 286 0 0 chr11 147432061 147432110 -1351362 - L2 LINE L2 -925 2389 2341 4703 222 49 15 chr11 147432280 147433840 -1349632 - L1M4 LINE L1 -3054 3590 2085 390 21 0 0 chr11 147433840 147433887 -1349585 + (TG)n Simple_repeat Simple_repeat 2 48 0 4703 222 49 15 chr11 147433887 147434490 -1348982 - L1M4 LINE L1 -4559 2085 1504 1700 157 46 23 chr11 147434490 147434795 -1348677 - AluJo SINE Alu 0 312 1 4703 222 49 15 chr11 147434795 147435226 -1348246 - L1M4 LINE L1 -5140 1504 804 252 308 67 17 chr11 147435508 147435628 -1347844 - L1M4 LINE L1 -6315 227 102 267 236 69 0 chr11 147435680 147435752 -1347720 - L1M3d LINE L1 -5814 317 1 246 339 138 25 chr11 147436111 147436350 -1347122 - LTR16C LTR ERVL -2 489 224 419 340 48 5 chr11 147438275 147438481 -1344991 + MIR SINE MIR 44 258 -4 1190 137 28 0 chr11 147438545 147438727 -1344745 + MER58A DNA MER1_type 37 223 -1 2646 185 25 41 chr11 147440091 147440600 -1342872 - MLT2B2 LTR ERVL -14 501 1 2060 138 3 6 chr11 147441270 147441581 -1341891 - AluSg SINE Alu 0 310 1 1048 78 16 0 chr11 147441595 147441724 -1341748 - AluY SINE Alu -180 131 1 278 269 118 25 chr11 147441898 147442017 -1341455 + MIR3 SINE MIR 40 169 -39 634 276 44 10 chr11 147442086 147442315 -1341157 + L1MC4a LINE L1 5718 5956 -165 212 184 0 0 chr11 147442322 147442360 -1341112 + (TA)n Simple_repeat Simple_repeat 2 39 0 278 242 0 0 chr11 147442662 147442728 -1340744 + MIR3 SINE MIR 93 158 -50 267 114 0 0 chr11 147442788 147442832 -1340640 + (CA)n Simple_repeat Simple_repeat 2 45 0 180 244 44 0 chr11 147444413 147444458 -1339014 - L3 LINE CR1 -3 1574 1528 3070 199 37 16 chr11 147444576 147445234 -1338238 + Tigger7 DNA MER2_type 1 2587 0 237 261 14 14 chr11 147445282 147445351 -1338121 - L3 LINE CR1 -237 1340 1272 864 191 36 6 chr11 147445356 147445524 -1337948 - MER45A DNA AcHobo -1 177 5 1101 169 0 93 chr11 147446456 147446692 -1336780 - AluJo SINE Alu -12 300 87 1299 228 40 58 chr11 147446959 147447337 -1336135 + MLT1A2 LTR MaLR 2 372 -2 271 321 50 13 chr11 147447746 147447905 -1335567 - L3 LINE CR1 -474 1103 939 2030 199 153 20 chr11 147448025 147448569 -1334903 + L1MC4a LINE L1 7192 7807 -1 253 221 126 32 chr11 147448573 147448668 -1334804 - L2 LINE L2 -13 3300 3197 204 273 50 111 chr11 147449041 147449239 -1334233 - L2 LINE L2 -553 2761 2576 263 301 15 66 chr11 147449401 147449537 -1333935 - MIR SINE MIR -113 149 21 394 277 36 18 chr11 147451290 147451402 -1332070 + MER81 DNA DNA 1 114 0 11586 58 11 1 chr11 147452527 147454762 -1328710 - L1PA6 LINE L1 -16 6138 3879 363 303 97 22 chr11 147455009 147455194 -1328278 + MIR SINE MIR 1 199 -63 426 325 0 0 chr11 147455331 147455454 -1328018 - MLT1I LTR MaLR -272 137 15 411 279 172 56 chr11 147455858 147456231 -1327241 - L2 LINE L2 0 3313 2898 659 303 40 12 chr11 147456329 147456580 -1326892 + MIR SINE MIR 2 259 -3 1190 227 98 25 chr11 147457175 147457501 -1325971 + MLT1A1 LTR MaLR 6 355 -10 224 277 101 24 chr11 147457822 147457947 -1325525 + MIR SINE MIR 58 202 -60 247 313 52 0 chr11 147460472 147460568 -1322904 + MIR3 SINE MIR 105 205 -3 621 239 124 109 chr11 147460669 147460834 -1322638 - L2 LINE L2 0 3313 3152 2247 125 61 0 chr11 147460834 147461226 -1322246 + L1MA8 LINE L1 5874 6289 -2 621 239 124 109 chr11 147461226 147461462 -1322010 - L2 LINE L2 -161 3152 2906 578 305 61 24 chr11 147463805 147464051 -1319421 - MIR SINE MIR 0 262 8 328 251 11 120 chr11 147464039 147464214 -1319258 + MIR SINE MIR 57 212 -50 * 294 283 76 11 chr11 147464718 147464810 -1318662 - MIR3 SINE MIR -25 183 86 220 309 164 0 chr11 147466003 147466113 -1317359 - L2 LINE L2 -49 3223 3096 184 172 0 0 chr11 147470007 147470036 -1313436 + MER5A DNA MER1_type 78 106 -83 1055 211 43 0 chr11 147470115 147470324 -1313148 + MER58A DNA MER1_type 5 222 -2 653 257 22 27 chr11 147470395 147470541 -1312931 + MIR SINE MIR 2 148 -114 356 62 234 0 chr11 147470541 147470605 -1312867 - MADE1 DNA Mariner 0 80 2 653 257 22 27 chr11 147470605 147470680 -1312792 + MIR SINE MIR 148 222 -40 882 264 152 26 chr11 147470772 147470965 -1312507 + MLT1L LTR MaLR 5 172 -443 1951 142 20 7 chr11 147470965 147471267 -1312205 - AluJo SINE Alu -6 306 1 882 264 152 26 chr11 147471267 147471566 -1311906 + MLT1L LTR MaLR 172 559 -56 3965 146 30 35 chr11 147471735 147472488 -1310984 + L1MB1 LINE L1 5419 6168 0 1965 62 0 0 chr11 147472557 147472800 -1310672 + L1PA5 LINE L1 5910 6152 -2 2027 163 40 14 chr11 147477814 147478164 -1305308 + MLT1A1 LTR MaLR 7 365 0 192 265 0 0 chr11 147478287 147478336 -1305136 - MIR SINE MIR -13 249 201 1346 155 6 65 chr11 147481532 147481854 -1301618 + AluSx SINE Alu 1 303 -9 723 194 124 35 chr11 147482854 147483055 -1300417 - MER20 DNA MER1_type 0 219 1 224 224 52 0 chr11 147483237 147483295 -1300177 + (TATG)n Simple_repeat Simple_repeat 1 61 0 334 253 0 36 chr11 147483305 147483388 -1300084 - MER112 DNA MER1_type -179 81 2 1508 275 131 83 chr11 147484339 147485619 -1297853 - L3 LINE CR1 -1 1576 236 350 332 40 87 chr11 147487075 147487936 -1295536 + L2 LINE L2 2419 3268 -4 2230 109 7 10 chr11 147488801 147489105 -1294367 - AluSx SINE Alu -9 303 1 191 313 39 31 chr11 147489291 147489419 -1294053 + MIR SINE MIR 97 225 -37 219 318 148 0 chr11 147491913 147492001 -1291471 - MIR SINE MIR -142 120 20 398 257 105 0 chr11 147492374 147492479 -1290993 - L2 LINE L2 -1 3271 3156 217 369 48 24 chr11 147493524 147493692 -1289780 + MIR SINE MIR 3 174 -88 255 31 0 0 chr11 147494332 147494364 -1289108 + (CA)n Simple_repeat Simple_repeat 2 33 0 370 333 21 28 chr11 147495908 147496070 -1287402 + MIR SINE MIR 27 190 -61 1202 138 31 26 chr11 147497070 147497265 -1286207 + AluJo SINE Alu 88 283 -29 277 261 134 34 chr11 147497889 147497996 -1285476 - L2 LINE L2 -1 3312 3190 1169 159 0 60 chr11 147497996 147498228 -1285244 - MER20 DNA MER1_type 0 219 2 277 261 134 34 chr11 147498228 147498239 -1285233 - L2 LINE L2 -123 3190 3182 225 299 45 67 chr11 147498840 147498974 -1284498 - L2 LINE L2 -556 2758 2628 311 298 161 29 chr11 147499030 147499235 -1284237 + MIR SINE MIR 20 251 -11 284 125 0 18 chr11 147500613 147500669 -1282803 + (TA)n Simple_repeat Simple_repeat 1 55 0 336 48 0 0 chr11 147500669 147500711 -1282761 + (CA)n Simple_repeat Simple_repeat 2 43 0 185 217 43 72 chr11 147501902 147501971 -1281501 - MIR SINE MIR -56 152 86 207 360 22 11 chr11 147502288 147502377 -1281095 - L2 LINE L2 -923 2391 2302 204 274 48 0 chr11 147503963 147504025 -1279447 + L2 LINE L2 3240 3304 -9 303 309 16 24 chr11 147506043 147506169 -1277303 + L2 LINE L2 3148 3272 0 624 269 43 39 chr11 147507488 147507744 -1275728 + MIR SINE MIR 5 261 -1 2386 97 0 0 chr11 147507869 147508168 -1275304 + AluSx SINE Alu 1 299 -13 264 305 31 31 chr11 147510862 147510990 -1272482 - MER5B DNA MER1_type -50 128 1 227 233 100 100 chr11 147515516 147515606 -1267866 - L2 LINE L2 -44 3228 3139 2118 128 0 16 chr11 147516078 147516384 -1267088 + AluSg SINE Alu 1 301 -9 2380 131 13 40 chr11 147516459 147516833 -1266639 - THE1B LTR MaLR 0 364 1 11724 101 29 3 chr11 147516833 147518373 -1265099 - THE1B-int LTR MaLR 0 1580 1 2244 126 62 39 chr11 147518373 147518729 -1264743 - THE1B LTR MaLR 0 364 1 1621 224 129 22 chr11 147518982 147519245 -1264227 - MLT1D LTR MaLR 0 505 272 1758 70 9 0 chr11 147519245 147519459 -1264013 - AluSc SINE Alu -14 295 80 1621 224 129 22 chr11 147519459 147519651 -1263821 - MLT1D LTR MaLR -233 272 1 243 299 143 53 chr11 147519684 147519910 -1263562 - L2 LINE L2 -2492 822 618 2255 122 140 8 chr11 147519910 147520288 -1263184 + MSTA LTR MaLR 1 428 0 243 299 143 53 chr11 147520288 147520479 -1262993 - L2 LINE L2 -2696 618 367 199 349 15 0 chr11 147520674 147520740 -1262732 - L2 LINE L2 -214 3058 2992 2414 56 7 23 chr11 147520761 147521088 -1262384 + AluSc SINE Alu 1 309 0 1863 150 59 27 chr11 147521150 147521523 -1261949 - MLT1B LTR MaLR -2 388 4 686 333 42 33 chr11 147522056 147522744 -1260728 + L1MEd LINE L1 561 1254 -4865 520 278 127 77 chr11 147522734 147523280 -1260192 + L1M4 LINE L1 3175 3692 -2454 * 1680 177 0 34 chr11 147523280 147523602 -1259870 - AluJo SINE Alu -1 311 1 520 278 127 77 chr11 147523602 147523658 -1259814 + L1M4 LINE L1 3692 3744 -2402 1839 24 0 0 chr11 147523658 147523867 -1259605 + AluY SINE Alu 99 307 -4 520 278 127 77 chr11 147523867 147523908 -1259564 + L1M4 LINE L1 3744 3781 -2365 1485 199 10 3 chr11 147523908 147524209 -1259263 + AluSx SINE Alu 1 303 -9 520 278 127 77 chr11 147524209 147524341 -1259131 + L1M4 LINE L1 3781 3991 -2155 3022 232 72 29 chr11 147524424 147524937 -1258535 - L1ME1 LINE L1 -5 6161 5671 2319 156 6 0 chr11 147524937 147525295 -1258177 + MER46B DNA MER2_type 2 236 0 3022 232 72 29 chr11 147525295 147525771 -1257701 - L1ME1 LINE L1 -495 5671 5133 690 142 16 0 chr11 147525773 147525900 -1257572 - ERVL-C1 LTR ERVL -1793 3971 3843 2450 203 32 24 chr11 147525900 147526403 -1257069 + MLT2B3 LTR ERVL 1 507 -47 320 163 0 0 chr11 147526530 147526579 -1256893 + MLT2B3 LTR ERVL 472 520 0 6777 198 60 32 chr11 147526579 147528388 -1255084 - ERVL-C1 LTR ERVL -1917 3847 1907 4337 226 40 28 chr11 147528368 147529458 -1254014 - ERVL-C1 LTR ERVL -3959 1805 631 * 3106 119 24 60 chr11 147529459 147529963 -1253509 + MER1A DNA MER1_type 44 529 0 465 265 92 118 chr11 147529977 147530399 -1253073 - ERVL-C1 LTR ERVL -5352 412 2 289 91 9 0 chr11 147530400 147530450 -1253022 - MLT2C1 LTR ERVL 0 397 359 1703 217 58 60 chr11 147530473 147530938 -1252534 - MER70B LTR ERVL -103 475 12 216 253 30 10 chr11 147530944 147531043 -1252429 + (TA)n Simple_repeat Simple_repeat 1 101 0 207 169 42 0 chr11 147531061 147531132 -1252340 + (TA)n Simple_repeat Simple_repeat 2 75 0 40 59 0 0 chr11 147531144 147531212 -1252260 + AT_rich Low_complexity Low_complexity 1 68 0 749 185 0 31 chr11 147531240 147531370 -1252102 - AluJb SINE Alu -29 283 158 1845 142 71 19 chr11 147531415 147531739 -1251733 - MLT2C1 LTR ERVL -52 345 5 675 257 82 19 chr11 147531746 147531952 -1251520 - L1MEc LINE L1 -2220 4162 3944 273 29 0 0 chr11 147532001 147532035 -1251437 + (CA)n Simple_repeat Simple_repeat 2 35 0 341 189 27 27 chr11 147532035 147532109 -1251363 - Tigger5 DNA MER2_type -5 2318 2245 2442 72 0 0 chr11 147532109 147532400 -1251072 - AluY SINE Alu -20 291 1 321 231 33 33 chr11 147532400 147532483 -1250989 + Tigger5 DNA MER2_type 2238 2323 0 233 207 0 35 chr11 147532483 147532528 -1250944 - Tigger5 DNA MER2_type -2275 48 6 315 0 0 0 chr11 147532540 147532575 -1250897 + (TG)n Simple_repeat Simple_repeat 2 36 0 387 196 52 10 chr11 147532577 147532674 -1250798 - L1MEc LINE L1 -2448 3934 3834 1908 271 84 35 chr11 147532735 147533918 -1249554 - L1MEc LINE L1 -3959 2604 1210 732 216 72 0 chr11 147533958 147534125 -1249347 - LTR47A LTR ERVL 0 452 274 683 297 135 11 chr11 147534406 147534776 -1248696 - L1MEc LINE L1 -5903 660 245 256 215 92 55 chr11 147535079 147535307 -1248165 - L1M4 LINE L1 -252 5926 5689 558 272 79 13 chr11 147535580 147535758 -1247714 + MLT1J LTR MaLR 10 157 -252 246 256 44 44 chr11 147536764 147536854 -1246618 - MLT1J LTR MaLR -299 212 123 1852 295 95 11 chr11 147537001 147538055 -1245417 + L1M4 LINE L1 4247 5388 -758 200 83 0 28 chr11 147538284 147538320 -1245152 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 36448 34 4 0 chr11 147538320 147543396 -1240076 - L1PA3 LINE L1 -24 6131 1038 1651 247 53 11 chr11 147543520 147544051 -1239421 + L1M4 LINE L1 2162 2714 -3432 201 74 0 0 chr11 147544453 147544480 -1238992 + (TCTCCC)n Simple_repeat Simple_repeat 5 31 0 682 349 57 17 chr11 147545147 147545684 -1237788 + L1ME3A LINE L1 5295 5849 -321 296 238 62 0 chr11 147546119 147546199 -1237273 + Charlie7 DNA MER1_type 89 173 -2439 643 262 110 59 chr11 147547162 147547866 -1235606 + L1ME4a LINE L1 5347 6083 -38 31 0 0 0 chr11 147548204 147548235 -1235237 + AT_rich Low_complexity Low_complexity 1 31 0 391 333 59 23 chr11 147548692 147548995 -1234477 + L2 LINE L2 2441 2754 -560 192 363 199 5 chr11 147549365 147549566 -1233906 + L2 LINE L2 2737 2976 -338 279 147 44 59 chr11 147550128 147550196 -1233276 + MLT1J LTR MaLR 232 298 -213 384 209 306 8 chr11 147550903 147551037 -1232435 - MER3 DNA MER1_type -82 127 1 207 338 0 14 chr11 147551109 147551180 -1232292 + L2 LINE L2 3188 3257 -56 332 304 211 0 chr11 147551651 147551822 -1231650 + L2 LINE L2 2288 2494 -820 234 0 0 0 chr11 147553471 147553497 -1229975 + (A)n Simple_repeat Simple_repeat 1 26 0 34 55 0 0 chr11 147553524 147553579 -1229893 + AT_rich Low_complexity Low_complexity 1 55 0 15991 23 0 0 chr11 147553579 147556082 -1227390 - L1PA3 LINE L1 -18 6137 3624 395 266 39 13 chr11 147556096 147556322 -1227150 + L1ME LINE L1 5561 5858 -312 268 254 42 0 chr11 147556395 147556466 -1227006 - MER5A DNA MER1_type -78 111 38 557 335 0 12 chr11 147556869 147557042 -1226430 - MER5B DNA MER1_type -6 172 2 292 265 50 105 chr11 147557353 147557534 -1225938 + L2 LINE L2 3058 3228 -44 5024 158 26 11 chr11 147557765 147558159 -1225313 - L1MC1 LINE L1 -2 6331 5945 3529 180 8 10 chr11 147558159 147558765 -1224707 + MER6A DNA MER2_type 1 605 0 5024 158 26 11 chr11 147558765 147559208 -1224264 - L1MC1 LINE L1 -388 5945 5481 1036 180 35 28 chr11 147559415 147559736 -1223736 - L1MC1 LINE L1 -743 5403 5169 441 115 0 0 chr11 147560231 147560309 -1223163 + (GA)n Simple_repeat Simple_repeat 1 78 0 743 276 34 78 chr11 147561214 147561482 -1221990 + MIR SINE MIR 7 262 0 1650 190 24 35 chr11 147564193 147564562 -1218910 - MLT1A1 LTR MaLR 0 365 1 230 242 45 15 chr11 147564612 147564678 -1218794 - MIR SINE MIR -18 244 177 612 321 34 10 chr11 147565510 147565719 -1217753 + MIR SINE MIR 48 261 -1 847 147 6 38 chr11 147566405 147566562 -1216910 + L1PA16 LINE L1 5993 6144 -22 312 109 18 0 chr11 147567703 147567758 -1215714 - L1MA10 LINE L1 -3 6331 6276 327 211 14 0 chr11 147567765 147567836 -1215636 - L1MA10 LINE L1 -90 6244 6173 * 4149 214 31 74 chr11 147567831 147568665 -1214807 - L1ME LINE L1 -671 5495 4627 1926 147 14 3 chr11 147568665 147568957 -1214515 - AluSx SINE Alu -17 295 1 4149 214 31 74 chr11 147568957 147569011 -1214461 - L1ME LINE L1 -1539 4627 4572 6312 27 0 1 chr11 147569011 147569748 -1213724 + L1PA3 LINE L1 5420 6155 0 4149 214 31 74 chr11 147569748 147570521 -1212951 - L1ME LINE L1 -1594 4572 3896 1761 161 42 11 chr11 147570521 147570807 -1212665 - AluJb SINE Alu -17 295 1 27 61 0 15 chr11 147570816 147570849 -1212623 + AT_rich Low_complexity Low_complexity 1 33 -32 2530 105 0 13 chr11 147570849 147571222 -1212250 - L1PB1 LINE L1 -2 6865 6498 27 61 0 15 chr11 147571222 147571254 -1212218 + AT_rich Low_complexity Low_complexity 33 65 0 13721 175 58 14 chr11 147571264 147577501 -1205971 - L1PB1 LINE L1 -360 6507 6 5673 158 15 23 chr11 147577509 147579345 -1204127 - L1PA16 LINE L1 -11 6155 4340 1583 127 41 73 chr11 147579345 147579660 -1203812 + AluJo SINE Alu 1 305 -7 5673 158 15 23 chr11 147579660 147579889 -1203583 - L1PA16 LINE L1 -1826 4340 4111 2739 245 77 41 chr11 147579894 147582428 -1201044 - L1MEc LINE L1 -2273 3942 1499 2223 114 7 0 chr11 147582428 147582727 -1200745 - AluSx SINE Alu -11 301 1 2739 245 77 41 chr11 147582727 147582904 -1200568 - L1MEc LINE L1 -4716 1499 1330 297 0 0 0 chr11 147582904 147582937 -1200535 + (CA)n Simple_repeat Simple_repeat 2 34 0 2739 245 77 41 chr11 147582937 147583025 -1200447 - L1MEc LINE L1 -4885 1330 851 * 29027 117 8 59 chr11 147583010 147585188 -1198284 - L1PA7 LINE L1 0 6154 3867 2410 93 0 6 chr11 147585188 147585501 -1197971 + AluY SINE Alu 1 311 0 29027 117 8 59 chr11 147585501 147589802 -1193670 - L1PA7 LINE L1 -2287 3867 12 2443 274 28 17 chr11 147589814 147590623 -1192849 - L1MEc LINE L1 -5527 869 52 422 344 117 64 chr11 147590683 147591043 -1192429 + L2 LINE L2 2894 3272 0 243 0 0 0 chr11 147591169 147591196 -1192276 + (CA)n Simple_repeat Simple_repeat 2 28 0 192 77 0 0 chr11 147591195 147591221 -1192251 + (TA)n Simple_repeat Simple_repeat 2 27 0 * 226 217 22 0 chr11 147591424 147591494 -1191978 + (TG)n Simple_repeat Simple_repeat 1 71 0 329 372 20 0 chr11 147591495 147591643 -1191829 + L2 LINE L2 3163 3313 0 301 323 38 8 chr11 147593158 147593291 -1190181 + L2 LINE L2 2065 2201 -1113 3003 246 117 30 chr11 147593586 147594288 -1189184 + L1M4 LINE L1 -99 719 -5719 2086 228 46 4 chr11 147594288 147594784 -1188688 - LTR53 LTR ERVL 0 519 3 3003 246 117 30 chr11 147594784 147595096 -1188376 + L1M4 LINE L1 719 1003 -5435 392 318 34 30 chr11 147595370 147595712 -1187760 + L1M4 LINE L1 2442 2815 -3906 261 311 20 20 chr11 147595886 147596034 -1187438 + L1M4 LINE L1 4505 4652 -1888 640 326 54 13 chr11 147596133 147596372 -1187100 - MIR SINE MIR -2 260 12 40732 36 22 1 chr11 147596525 147602554 -1180918 + L1PA3 LINE L1 1 6155 0 225 0 0 0 chr11 147602617 147602642 -1180830 + (T)n Simple_repeat Simple_repeat 1 25 0 332 304 211 0 chr11 147604292 147604463 -1179009 - L2 LINE L2 -820 2494 2288 213 338 0 14 chr11 147604934 147605005 -1178467 - L2 LINE L2 -56 3257 3188 316 209 306 8 chr11 147605077 147605211 -1178261 + MER3 DNA MER1_type 1 127 -82 256 147 44 59 chr11 147605918 147605986 -1177486 - MLT1J LTR MaLR -213 298 232 197 368 199 5 chr11 147606548 147606749 -1176723 - L2 LINE L2 -338 2976 2737 409 333 59 23 chr11 147607119 147607422 -1176050 - L2 LINE L2 -560 2754 2441 31 0 0 0 chr11 147607879 147607910 -1175562 + AT_rich Low_complexity Low_complexity 1 31 0 366 273 106 68 chr11 147608248 147608940 -1174532 - L1ME4a LINE L1 -38 6083 5366 266 230 68 0 chr11 147609915 147609989 -1173483 - Charlie7 DNA MER1_type -2439 173 95 491 343 63 13 chr11 147610430 147610967 -1172505 - L1ME3A LINE L1 -321 5918 5364 313 318 124 40 chr11 147611183 147611457 -1172015 - L1ME3A LINE L1 -1098 5117 4821 237 178 0 0 chr11 147611634 147611679 -1171793 + GA-rich Low_complexity Low_complexity 5 49 0 1444 261 53 28 chr11 147612063 147612597 -1170875 - L1MEc LINE L1 -3432 2783 2243 971 228 22 22 chr11 147612597 147612821 -1170651 - MER58A DNA MER1_type 0 224 1 1444 261 53 28 chr11 147612821 147613204 -1170268 - L1MEc LINE L1 -3972 2243 1871 241 209 0 75 chr11 147613207 147613274 -1170198 - MER68 LTR ERV1 -500 62 1 429 264 0 0 chr11 147613331 147613441 -1170031 - MER105 DNA DNA -46 158 49 1256 215 43 24 chr11 147613671 147614116 -1169356 + MLT1D LTR MaLR 3 496 -9 229 254 63 99 chr11 147614410 147614552 -1168920 + MIR SINE MIR 88 224 -38 495 73 0 0 chr11 147614759 147614827 -1168645 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 543 287 93 27 chr11 147615112 147615659 -1167813 - L1MEc LINE L1 -4975 1230 648 351 0 0 0 chr11 147615858 147615897 -1167575 + (T)n Simple_repeat Simple_repeat 1 39 0 22 0 0 0 chr11 147615900 147615922 -1167550 + GC_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr11 147616072 147616101 -1167371 + AT_rich Low_complexity Low_complexity 1 29 0 5531 139 60 5 chr11 147617388 147617859 -1165613 + L1PBa LINE L1 1785 2229 -4634 1957 140 10 13 chr11 147617859 147617995 -1165477 + AluSx SINE Alu 1 136 -176 233 57 29 0 chr11 147617995 147618030 -1165442 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1957 140 10 13 chr11 147618030 147618200 -1165272 + AluSx SINE Alu 136 306 -6 5531 139 60 5 chr11 147618200 147618832 -1164640 + L1PBa LINE L1 2229 2949 -3914 313 121 15 15 chr11 147619764 147619830 -1163642 + CT-rich Low_complexity Low_complexity 3 68 0 215 326 11 11 chr11 147620038 147620130 -1163342 - MIR3 SINE MIR -50 158 67 273 29 0 0 chr11 147620387 147620421 -1163051 + (CA)n Simple_repeat Simple_repeat 2 35 0 312 189 27 27 chr11 147620421 147620495 -1162977 - Tigger5 DNA MER2_type -5 2318 2245 2428 72 0 0 chr11 147620495 147620786 -1162686 - AluY SINE Alu -20 291 1 280 246 29 0 chr11 147620790 147620859 -1162613 + Tigger5 DNA MER2_type 2242 2312 -11 280 214 0 0 chr11 147620856 147620912 -1162560 - Tigger5 DNA MER2_type -2262 61 6 327 49 0 0 chr11 147620915 147620956 -1162516 + (TG)n Simple_repeat Simple_repeat 2 42 0 355 213 53 11 chr11 147620960 147621054 -1162418 - L1MEc LINE L1 -2451 3764 3667 2010 276 89 15 chr11 147621115 147622269 -1161203 - L1MEc LINE L1 -3959 2437 1198 663 216 72 0 chr11 147622313 147622480 -1160992 - LTR47A LTR ERVL 0 452 274 576 304 133 5 chr11 147622761 147623130 -1160342 - L1MEc LINE L1 -5903 493 78 330 296 69 65 chr11 147623404 147623681 -1159791 - L1MB8 LINE L1 -232 5946 5669 492 272 83 12 chr11 147623934 147624103 -1159369 + MLT1J LTR MaLR 10 190 -321 1440 298 94 10 chr11 147625358 147626412 -1157060 + L1ME LINE L1 4247 5388 -758 200 83 0 28 chr11 147626641 147626677 -1156795 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 14370 23 4 0 chr11 147626677 147629172 -1154300 - L1PA3 LINE L1 -24 6131 3624 328 294 46 16 chr11 147629186 147629380 -1154092 + L1ME LINE L1 5561 5760 -402 272 254 42 0 chr11 147629485 147629556 -1153916 - MER5A DNA MER1_type -78 111 38 573 335 0 12 chr11 147629959 147630132 -1153340 - MER5B DNA MER1_type -6 172 2 290 253 50 110 chr11 147630443 147630625 -1152847 + L2 LINE L2 3058 3228 -44 3339 165 27 6 chr11 147630856 147631250 -1152222 - L1MC1 LINE L1 -2 6331 5918 3244 180 8 10 chr11 147631250 147631856 -1151616 + MER6A DNA MER2_type 1 605 0 3339 165 27 6 chr11 147631856 147632084 -1151388 - L1MC1 LINE L1 -415 5918 5696 26 0 0 0 chr11 147632427 147632453 -1151019 + AT_rich Low_complexity Low_complexity 1 26 0 405 0 0 0 chr11 147632691 147632736 -1150736 + (T)n Simple_repeat Simple_repeat 1 45 0 31 0 0 0 chr11 147632910 147632941 -1150531 + AT_rich Low_complexity Low_complexity 1 31 0 1823 174 0 20 chr11 147633236 147633535 -1149937 - 7SLRNA srpRNA srpRNA -27 293 1 2133 115 3 0 chr11 147633566 147633853 -1149619 + AluSx SINE Alu 5 292 -20 308 248 216 16 chr11 147634985 147635110 -1148362 - L3 LINE CR1 -26 1551 1402 22 35 0 0 chr11 147635110 147635139 -1148333 + AT_rich Low_complexity Low_complexity 1 29 0 1716 167 9 28 chr11 147635139 147635457 -1148015 - AluJo SINE Alu 0 312 1 318 284 59 0 chr11 147635457 147635559 -1147913 - L3 LINE CR1 -163 1414 1307 2094 297 96 50 chr11 147635768 147636740 -1146732 + L2 LINE L2 1714 2777 -536 1333 174 38 0 chr11 147636740 147637033 -1146439 + L1MA9 LINE L1 6000 6303 -9 2094 297 96 50 chr11 147637033 147637594 -1145878 + L2 LINE L2 2777 3311 -2 1977 140 13 0 chr11 147637680 147637988 -1145484 - AluJb SINE Alu 0 312 1 234 223 146 15 chr11 147638312 147638442 -1145030 - HAL1b LINE L1 -9 1339 1193 770 259 78 37 chr11 147638646 147639362 -1144110 - L1ME LINE L1 -4996 1074 520 356 303 44 48 chr11 147639563 147639791 -1143681 - L1ME LINE L1 -5604 466 194 1768 168 24 74 chr11 147639791 147640167 -1143305 + MLT2C1 LTR ERVL 1 355 -42 267 31 0 0 chr11 147640167 147640199 -1143273 + (TG)n Simple_repeat Simple_repeat 2 33 0 1768 168 24 74 chr11 147640199 147640240 -1143232 + MLT2C1 LTR ERVL 355 397 0 356 303 44 48 chr11 147640240 147640417 -1143055 - L1ME LINE L1 -5876 194 18 493 314 57 44 chr11 147640424 147640739 -1142733 - L1M4 LINE L1 -2300 3846 3528 387 293 87 36 chr11 147640782 147641335 -1142137 - L1M4 LINE L1 -2903 3243 2663 1571 177 109 53 chr11 147642193 147642588 -1140884 + MER47B DNA MER2_type 2 418 0 8944 199 79 31 chr11 147642591 147645044 -1138428 + L1MDa LINE L1 100 2675 -3865 1905 126 0 3 chr11 147645051 147645361 -1138111 - L1MA5 LINE L1 -347 5953 5645 8612 154 33 9 chr11 147645361 147646902 -1136570 - Tigger2 DNA MER2_type 0 2718 1141 2306 98 3 0 chr11 147646902 147647207 -1136265 - AluSp SINE Alu -7 306 1 2679 241 70 2 chr11 147647209 147648192 -1135280 + L1MDa LINE L1 2691 3740 -2800 6406 146 14 1 chr11 147648192 147649564 -1133908 + L1MA3 LINE L1 4913 6305 0 730 229 31 98 chr11 147649634 147649992 -1133480 + L1MDa LINE L1 3813 4146 -2394 1711 168 25 6 chr11 147649992 147650319 -1133153 + MLT1A1 LTR MaLR 33 365 0 4562 202 35 55 chr11 147650319 147651359 -1132113 + L1MB4 LINE L1 4183 5242 -1332 1845 136 0 0 chr11 147651359 147651617 -1131855 + AluSx SINE Alu 38 295 -17 4562 202 35 55 chr11 147651617 147652646 -1130826 + L1MB4 LINE L1 5242 6199 -375 2267 120 0 0 chr11 147652646 147652946 -1130526 - AluSx SINE Alu -12 300 1 4562 202 35 55 chr11 147652946 147653314 -1130158 + L1MB4 LINE L1 6199 6573 -1 404 300 57 0 chr11 147653464 147653604 -1129868 + L2 LINE L2 3165 3312 -1 1016 233 87 13 chr11 147656505 147656883 -1126589 - MER110A LTR ERV1 0 468 63 695 263 72 0 chr11 147658714 147658918 -1124554 - MIR SINE MIR -21 241 25 255 61 0 0 chr11 147659915 147659948 -1123524 + (TA)n Simple_repeat Simple_repeat 2 34 0 28 0 0 0 chr11 147660204 147660232 -1123240 + AT_rich Low_complexity Low_complexity 1 28 0 201 348 59 42 chr11 147660570 147660688 -1122784 - MIR3 SINE MIR -75 133 14 257 189 19 0 chr11 147660891 147660944 -1122528 - MER63 DNA MER1_type -33 1028 975 422 183 0 0 chr11 147660944 147661015 -1122457 - MER63 DNA MER1_type -313 747 677 575 205 60 36 chr11 147661446 147661612 -1121860 - MIR SINE MIR 0 262 93 767 245 31 10 chr11 147662876 147663068 -1120404 - MIR SINE MIR -10 252 57 347 328 45 15 chr11 147663119 147663155 -1120317 - MIR SINE MIR -112 150 117 2326 243 33 10 chr11 147663155 147663735 -1119737 + MLT1E LTR MaLR 1 593 0 347 328 45 15 chr11 147663735 147663832 -1119640 - MIR SINE MIR -145 117 13 1620 88 0 0 chr11 147664071 147664275 -1119197 - AluSg/x SINE Alu -9 301 98 198 269 103 13 chr11 147664278 147664356 -1119116 - L2 LINE L2 -1884 1430 1346 2264 100 24 0 chr11 147665098 147665389 -1118083 - AluSx SINE Alu -14 298 1 266 245 0 82 chr11 147665432 147665530 -1117942 - L1MC4 LINE L1 -1339 6703 6614 431 129 0 0 chr11 147666435 147666497 -1116975 - MER1B DNA MER1_type 0 333 272 1477 138 0 9 chr11 147666500 147666724 -1116748 - MER1B DNA MER1_type -75 222 1 1607 173 10 13 chr11 147667394 147667700 -1115772 - AluJb SINE Alu -6 306 2 403 325 0 0 chr11 147668082 147668196 -1115276 - MER94 DNA DNA -1 133 20 595 276 31 5 chr11 147669308 147669500 -1113972 - MIR SINE MIR 0 262 66 21 71 0 0 chr11 147669753 147669795 -1113677 + AT_rich Low_complexity Low_complexity 1 42 0 276 278 78 17 chr11 147670266 147670381 -1113091 - MLT1L LTR MaLR -26 589 468 236 278 189 26 chr11 147670418 147670609 -1112863 - MLT1L LTR MaLR -215 400 179 * 6264 174 42 21 chr11 147670608 147671491 -1111981 + Charlie1 DNA MER1_type 1450 2370 -391 195 42 0 0 chr11 147671491 147671515 -1111957 + (TC)n Simple_repeat Simple_repeat 2 25 0 6264 174 42 21 chr11 147671515 147671915 -1111557 + Charlie1 DNA MER1_type 2370 2760 -1 395 195 87 47 chr11 147671916 147672065 -1111407 - MLT1L LTR MaLR -460 155 1 320 172 47 0 chr11 147672280 147672344 -1111128 + AluJ/FLAM SINE Alu 1 67 -235 219 327 45 59 chr11 147672596 147672798 -1110674 + L2 LINE L2 2823 3021 -251 243 0 0 0 chr11 147674331 147674358 -1109114 + (T)n Simple_repeat Simple_repeat 1 27 0 355 258 21 0 chr11 147674820 147674913 -1108559 - MER94 DNA DNA -25 109 15 405 329 99 48 chr11 147676716 147677132 -1106340 - L2 LINE L2 -25 3247 2811 201 404 0 10 chr11 147677790 147677894 -1105578 + L2 LINE L2 2995 3097 -175 405 276 44 110 chr11 147678414 147678642 -1104830 + MLT1J LTR MaLR 106 318 -193 209 259 37 0 chr11 147678858 147678912 -1104560 - L2 LINE L2 -10 3303 3248 217 214 21 159 chr11 147679409 147679520 -1103952 + L2 LINE L2 3145 3270 -2 2817 79 3 11 chr11 147679520 147679898 -1103574 + THE1C LTR MaLR 1 375 0 217 214 21 159 chr11 147679898 147679914 -1103558 + L2 LINE L2 3270 3253 -19 3251 203 33 6 chr11 147679914 147680550 -1102922 - MER82 DNA MER2_type 0 653 1 217 214 21 159 chr11 147680550 147680566 -1102906 + L2 LINE L2 3252 3269 -3 230 270 0 14 chr11 147681683 147681757 -1101715 - L1MC4 LINE L1 -1337 6705 6633 216 189 38 19 chr11 147681784 147681837 -1101635 - L2 LINE L2 -25 3288 3235 2543 48 0 0 chr11 147682162 147682484 -1100988 + AluY SINE Alu 1 322 0 211 237 34 0 chr11 147683244 147683303 -1100169 + L2 LINE L2 2999 3059 -213 687 152 9 0 chr11 147684561 147684666 -1098806 - MSTD LTR MaLR -290 106 1 450 0 0 0 chr11 147684717 147684767 -1098705 + (TA)n Simple_repeat Simple_repeat 2 51 0 212 240 0 20 chr11 147685530 147685580 -1097892 - L2 LINE L2 -15 3257 3209 1816 227 10 24 chr11 147685666 147686084 -1097388 + MLT2D LTR ERVL 3 414 0 2358 73 0 63 chr11 147686337 147686653 -1096819 + AluSc SINE Alu 1 296 -13 380 91 0 0 chr11 147686653 147686708 -1096764 + AluSc SINE Alu 245 299 0 2343 125 28 17 chr11 147687000 147687360 -1096112 - THE1B LTR MaLR 0 364 1 251 314 49 49 chr11 147687361 147687546 -1095926 + L2 LINE L2 2271 2455 -859 485 244 94 6 chr11 147687780 147687986 -1095486 - MLT1F1 LTR MaLR -2 565 304 433 257 59 44 chr11 147687984 147688120 -1095352 - MLT1F1 LTR MaLR -394 148 11 * 271 327 31 12 chr11 147688461 147688623 -1094849 + L2 LINE L2 3149 3313 0 1352 261 80 21 chr11 147688690 147689146 -1094326 - MLT1H1 LTR MaLR -64 491 1 303 345 30 6 chr11 147689217 147689385 -1094087 + L3 LINE CR1 455 626 -951 369 271 88 18 chr11 147689419 147689611 -1093861 + MER20 DNA MER1_type 5 219 0 786 303 232 25 chr11 147689671 147690183 -1093289 + L3 LINE CR1 870 1487 -90 234 0 0 0 chr11 147693125 147693151 -1090321 + (TG)n Simple_repeat Simple_repeat 2 27 0 180 0 0 0 chr11 147693868 147693888 -1089584 + (TC)n Simple_repeat Simple_repeat 1 20 0 481 300 50 0 chr11 147694366 147694546 -1088926 + L2 LINE L2 2218 2406 -908 332 119 17 0 chr11 147695368 147695427 -1088045 + GA-rich Low_complexity Low_complexity 1 60 0 332 271 42 23 chr11 147695873 147696109 -1087363 + LTR16A LTR ERVL 91 372 -78 535 265 119 5 chr11 147696206 147696391 -1087081 + ERVL LTR ERVL 37 242 -4754 388 304 39 33 chr11 147696451 147696632 -1086840 + ERVL LTR ERVL 333 514 -4482 1207 324 79 78 chr11 147696674 147697574 -1085898 + ERVL LTR ERVL 3588 4845 -508 3351 113 58 34 chr11 147698591 147698978 -1084494 - L1PB3 LINE L1 -2 6152 5747 198 0 0 0 chr11 147698978 147699000 -1084472 + (CA)n Simple_repeat Simple_repeat 2 23 0 3351 113 58 34 chr11 147699000 147699167 -1084305 - L1PB3 LINE L1 -407 5747 5585 775 302 9 0 chr11 147700131 147700356 -1083116 - MIR SINE MIR -16 246 20 268 231 87 48 chr11 147701060 147701164 -1082308 + MIR SINE MIR 85 192 -70 580 255 21 27 chr11 147701304 147701492 -1081980 - LTR16C LTR ERVL 0 491 305 353 254 61 79 chr11 147701508 147701673 -1081799 - LTR16C LTR ERVL -329 162 1 256 321 18 91 chr11 147701726 147701891 -1081581 - MER5B DNA MER1_type 0 178 26 750 281 75 27 chr11 147702569 147702985 -1080487 - LTR50 LTR ERVL -111 684 401 347 203 127 23 chr11 147702981 147703181 -1080291 - LTR50 LTR ERVL -519 276 1 * 195 353 89 72 chr11 147703203 147703563 -1079909 + L2 LINE L2 2902 3267 -5 339 299 122 35 chr11 147704152 147704349 -1079123 - MIR SINE MIR -15 247 34 216 374 0 0 chr11 147704681 147704772 -1078700 + MIR3 SINE MIR 100 190 -18 1831 209 72 33 chr11 147705625 147706108 -1077364 - MLT1D LTR MaLR -1 504 3 373 308 0 30 chr11 147706936 147707069 -1076403 - L3 LINE CR1 -6 1571 1443 313 296 184 0 chr11 147707296 147707519 -1075953 - L1ME LINE L1 -5282 788 525 539 210 147 0 chr11 147712354 147712497 -1070975 - MER103 DNA DNA 0 166 3 3137 162 16 12 chr11 147712580 147713093 -1070379 + MLT2B2 LTR ERVL 1 515 0 751 230 52 5 chr11 147714367 147714558 -1068914 + MER3 DNA MER1_type 9 208 -1 369 0 0 0 chr11 147714628 147714669 -1068803 + (TG)n Simple_repeat Simple_repeat 1 41 0 680 153 7 39 chr11 147715467 147715757 -1067715 + CT-rich Low_complexity Low_complexity 1 280 0 180 0 0 0 chr11 147715781 147715801 -1067671 + (TTCC)n Simple_repeat Simple_repeat 3 22 0 488 278 30 73 chr11 147716238 147716472 -1067000 - MIR SINE MIR -12 250 27 215 282 74 80 chr11 147716543 147716706 -1066766 - MIR SINE MIR -50 212 51 299 328 149 5 chr11 147719127 147719328 -1064144 - MIR SINE MIR -12 250 21 611 254 94 60 chr11 147720038 147720607 -1062865 - L2 LINE L2 0 3313 2730 265 274 0 0 chr11 147721467 147721540 -1061932 + T-rich Low_complexity Low_complexity 1 73 0 194 314 43 0 chr11 147721654 147721724 -1061748 + MIR SINE MIR 117 189 -73 309 314 43 28 chr11 147723097 147723358 -1060114 - MLT1I LTR MaLR -3 406 113 189 302 0 0 chr11 147723742 147723805 -1059667 - MIR SINE MIR -32 230 168 275 260 39 39 chr11 147723934 147724038 -1059434 + MIR3 SINE MIR 82 185 -23 367 273 188 23 chr11 147724725 147724901 -1058571 - MIR SINE MIR -15 247 43 278 281 144 20 chr11 147725044 147725190 -1058282 + L2 LINE L2 3109 3272 0 211 273 162 0 chr11 147725398 147725497 -1057975 - L2 LINE L2 -7 3306 3192 2210 144 31 0 chr11 147725925 147726278 -1057194 - THE1B LTR MaLR 0 364 1 1880 180 55 3 chr11 147726705 147727049 -1056423 - MLT1A1 LTR MaLR -3 362 1 2397 114 0 0 chr11 147727164 147727472 -1056000 + AluSx SINE Alu 1 308 -4 213 39 0 0 chr11 147727671 147727697 -1055775 + (A)n Simple_repeat Simple_repeat 1 26 0 508 308 161 43 chr11 147728945 147729318 -1054154 - MLT1J LTR MaLR -74 437 21 24 0 0 0 chr11 147729499 147729523 -1053949 + AT_rich Low_complexity Low_complexity 1 24 0 689 296 79 4 chr11 147729886 147730126 -1053346 - MIR SINE MIR 0 262 5 317 289 12 0 chr11 147730658 147730741 -1052731 - L2 LINE L2 -3 3269 3186 467 259 38 0 chr11 147732069 147732200 -1051272 + MIR SINE MIR 56 191 -71 7027 176 126 28 chr11 147732203 147733714 -1049758 - MER52A LTR ERV1 0 1755 1 251 146 18 0 chr11 147733991 147734046 -1049426 + (TCCA)n Simple_repeat Simple_repeat 3 58 0 306 340 118 27 chr11 147734047 147734344 -1049128 - L2 LINE L2 0 3272 2949 296 330 27 9 chr11 147734424 147734536 -1048936 - MIR SINE MIR -64 144 31 3217 158 81 2 chr11 147734616 147734756 -1048716 - L1MA9 LINE L1 -1 6311 6183 276 30 0 0 chr11 147734756 147734789 -1048683 + (TG)n Simple_repeat Simple_repeat 1 33 0 3217 158 81 2 chr11 147734789 147735257 -1048215 - L1MA9 LINE L1 -129 6183 5655 598 282 28 29 chr11 147736391 147736687 -1046785 - L1MC4a LINE L1 -151 5970 5669 10795 88 6 1 chr11 147736850 147739098 -1044374 + L1PA7 LINE L1 3893 6154 0 241 267 139 0 chr11 147739198 147739284 -1044188 - MIR3 SINE MIR -45 163 66 370 262 74 33 chr11 147739409 147739531 -1043941 + MIR3 SINE MIR 61 187 -21 2202 119 0 0 chr11 147739604 147739898 -1043574 - AluSx SINE Alu -14 298 5 323 98 0 0 chr11 147739898 147739939 -1043533 - Alu SINE Alu -262 41 1 21 71 0 0 chr11 147740377 147740419 -1043053 + AT_rich Low_complexity Low_complexity 1 42 0 401 316 41 12 chr11 147740487 147740658 -1042814 + MIR SINE MIR 14 189 -73 1687 269 125 12 chr11 147741287 147741848 -1041624 - MLT2E LTR ERVL -2 626 3 300 243 56 28 chr11 147741982 147742089 -1041383 - L1ME1 LINE L1 0 6166 6057 3151 252 87 25 chr11 147742094 147742873 -1040599 - L1MEc LINE L1 -1403 4812 4082 2106 142 7 0 chr11 147742873 147743175 -1040297 - AluSx SINE Alu -8 304 1 3151 252 87 25 chr11 147743175 147743908 -1039564 - L1MEc LINE L1 -2133 4082 3207 1024 243 25 51 chr11 147743935 147744024 -1039448 - L1MEc LINE L1 -3129 3086 2996 947 241 91 5 chr11 147744024 147744244 -1039228 + MER8 DNA MER2_type 1 239 0 1024 243 25 51 chr11 147744244 147744624 -1038848 - L1MEc LINE L1 -3219 2996 2629 1478 285 75 21 chr11 147744724 147745525 -1037947 - L1MEc LINE L1 -4018 2378 1535 273 29 0 0 chr11 147745525 147745559 -1037913 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 4010 21 0 0 chr11 147745559 147745982 -1037490 - SVA Other Other -22 1364 942 1745 170 7 16 chr11 147746226 147746532 -1036940 - AluJo SINE Alu -9 303 1 185 353 29 10 chr11 147746598 147746700 -1036772 - L3 LINE CR1 -634 943 840 264 208 0 42 chr11 147746795 147746867 -1036605 - L1ME1 LINE L1 -199 5922 5854 240 213 64 75 chr11 147747483 147747577 -1035895 + MIR SINE MIR 120 212 -50 222 238 16 0 chr11 147747620 147747683 -1035789 - L3 LINE CR1 -849 728 665 1844 148 28 3 chr11 147747733 147748024 -1035448 - AluSx SINE Alu -12 300 3 2280 112 0 19 chr11 147748123 147748437 -1035035 + AluSc SINE Alu 1 308 -1 373 218 121 48 chr11 147749820 147749944 -1033528 - L2 LINE L2 0 3272 3140 189 303 81 0 chr11 147750162 147750261 -1033211 - L2 LINE L2 -251 3021 2915 9496 205 69 15 chr11 147750468 147750749 -1032723 - L1MA4A LINE L1 -1 7004 6740 2099 77 0 35 chr11 147750749 147751060 -1032412 - AluY SINE Alu -11 300 1 9496 205 69 15 chr11 147751060 147754525 -1028947 - L1MA4A LINE L1 -265 6740 2876 749 211 0 7 chr11 147754533 147754680 -1028792 - FRAM SINE Alu -30 146 1 15482 189 10 15 chr11 147754682 147757495 -1025977 - L1MA4A LINE L1 -3956 2893 94 728 130 0 0 chr11 147757563 147757678 -1025794 - L1MA5 LINE L1 -2 6298 6184 232 286 115 81 chr11 147758802 147759036 -1024436 + L2 LINE L2 956 1197 -2117 390 284 120 24 chr11 147759040 147759318 -1024154 - LTR16B LTR ERVL 0 464 104 1223 299 196 35 chr11 147759459 147760205 -1023267 + L2 LINE L2 1214 1839 -1475 1887 177 36 17 chr11 147760205 147760561 -1022911 - MLT1A1 LTR MaLR 0 365 3 1223 299 196 35 chr11 147760561 147761082 -1022390 + L2 LINE L2 1839 2685 -629 1035 290 97 19 chr11 147761133 147761595 -1021877 - MLT1H1 LTR MaLR -25 530 33 1001 244 131 36 chr11 147761616 147762038 -1021434 - MLT1D LTR MaLR -28 460 1 295 341 205 10 chr11 147762127 147762551 -1020921 + L2 LINE L2 2790 3304 -9 292 276 11 0 chr11 147762979 147763066 -1020406 + L2 LINE L2 3226 3313 0 204 234 31 16 chr11 147764522 147764586 -1018886 - MIR SINE MIR -60 148 84 393 22 0 0 chr11 147764833 147764879 -1018593 + (CA)n Simple_repeat Simple_repeat 1 46 0 1271 229 157 14 chr11 147765078 147765519 -1017953 + MLT1D LTR MaLR 1 504 -1 292 363 45 10 chr11 147765622 147765823 -1017649 - MIR SINE MIR -10 252 45 281 291 12 0 chr11 147767160 147767246 -1016226 - L2 LINE L2 0 3313 3227 21 0 0 0 chr11 147767483 147767504 -1015968 + AT_rich Low_complexity Low_complexity 1 21 0 366 325 99 24 chr11 147767615 147767867 -1015605 + L3 LINE CR1 1213 1483 -94 195 42 0 0 chr11 147772238 147772262 -1011210 + (TGG)n Simple_repeat Simple_repeat 1 24 0 184 237 0 0 chr11 147772444 147772482 -1010990 - L2 LINE L2 -559 2755 2718 252 0 0 0 chr11 147772805 147772833 -1010639 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 1920 145 14 3 chr11 147772835 147773118 -1010354 - AluJb SINE Alu -25 287 2 589 368 28 0 chr11 147773149 147773399 -1010073 - MIR SINE MIR -2 260 4 222 232 10 20 chr11 147775370 147775469 -1008003 + CT-rich Low_complexity Low_complexity 2 99 0 21 0 0 0 chr11 147775523 147775544 -1007928 + AT_rich Low_complexity Low_complexity 1 21 0 2273 178 10 0 chr11 147775550 147775949 -1007523 - L1PA16 LINE L1 -7 6159 5757 21 0 0 0 chr11 147776034 147776055 -1007417 + AT_rich Low_complexity Low_complexity 1 21 0 403 313 116 18 chr11 147776293 147776568 -1006904 + L2 LINE L2 2608 2909 -405 234 294 0 28 chr11 147776768 147776877 -1006595 + L2 LINE L2 3144 3249 -64 289 301 186 35 chr11 147777155 147777354 -1006118 + L2 LINE L2 3044 3272 0 225 305 137 0 chr11 147777841 147777936 -1005536 + MIR SINE MIR 68 175 -87 227 267 0 27 chr11 147779066 147779141 -1004331 + GA-rich Low_complexity Low_complexity 2 74 0 4531 148 22 16 chr11 147779751 147780512 -1002960 - LTR39 LTR ERV1 -17 766 1 217 254 197 0 chr11 147780690 147780761 -1002711 + MIR SINE MIR 15 99 -163 2153 133 62 28 chr11 147780834 147781186 -1002286 - THE1B LTR MaLR 0 364 1 402 253 193 7 chr11 147781730 147781880 -1001592 - MER5A DNA MER1_type -3 186 9 189 0 0 0 chr11 147782430 147782451 -1001021 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 1608 183 42 3 chr11 147782711 147783000 -1000472 - AluJo SINE Alu -6 306 7 498 262 35 29 chr11 147783047 147783219 -1000253 - MIR SINE MIR -20 242 70 1033 247 115 56 chr11 147783973 147784434 -999038 + MLT1D LTR MaLR 1 488 -17 2308 192 14 21 chr11 147784794 147785222 -998250 + MSTB LTR MaLR 1 425 -1 181 244 0 0 chr11 147786021 147786066 -997406 + L2 LINE L2 2235 2279 -1035 480 293 28 11 chr11 147786328 147786509 -996963 + MIR SINE MIR 78 261 -1 299 317 44 33 chr11 147786562 147786742 -996730 + L2 LINE L2 2631 2812 -502 412 309 108 33 chr11 147789699 147790032 -993440 + L2 LINE L2 2915 3272 0 282 29 0 0 chr11 147790138 147790173 -993299 + (TG)n Simple_repeat Simple_repeat 2 36 0 524 252 4 0 chr11 147790188 147790419 -993053 + (TA)n Simple_repeat Simple_repeat 1 232 0 258 280 65 52 chr11 147790434 147790606 -992866 - MIR SINE MIR -58 204 16 2733 145 15 51 chr11 147792115 147792312 -991160 - L1MA7 LINE L1 -2 6289 6086 2039 113 0 24 chr11 147792312 147792603 -990869 - AluSg SINE Alu -26 284 1 2733 145 15 51 chr11 147792603 147792935 -990537 - L1MA7 LINE L1 -205 6086 5779 539 238 35 29 chr11 147793236 147793408 -990064 + MER5B DNA MER1_type 3 175 -3 241 241 83 19 chr11 147793446 147793554 -989918 - HAL1 LINE L1 -181 2326 2212 295 78 39 0 chr11 147793560 147793611 -989861 + (TA)n Simple_repeat Simple_repeat 1 53 0 314 216 21 0 chr11 147793672 147793769 -989703 + (TA)n Simple_repeat Simple_repeat 2 100 0 260 253 11 22 chr11 147793999 147794090 -989382 - HAL1 LINE L1 -343 2164 2075 896 275 124 70 chr11 147794345 147795214 -988258 - HAL1 LINE L1 -608 1899 978 198 103 0 0 chr11 147795214 147795243 -988229 + (ATG)n Simple_repeat Simple_repeat 3 31 0 896 275 124 70 chr11 147795243 147795279 -988193 - HAL1 LINE L1 -1529 978 945 246 361 41 0 chr11 147796041 147796163 -987309 - MIR3 SINE MIR -1 207 81 496 318 46 73 chr11 147799673 147800085 -983387 + L2 LINE L2 2226 2626 -688 810 83 7 21 chr11 147800104 147800248 -983224 + (TCTA)n Simple_repeat Simple_repeat 1 142 0 294 244 13 0 chr11 147800396 147800474 -982998 + MER116 DNA Mariner 1 79 -1 614 250 83 40 chr11 147800479 147800788 -982684 - L1MC4a LINE L1 -372 5799 5671 6642 28 0 1 chr11 147800867 147800883 -982589 + L1P1 LINE L1 4603 4618 -1537 5685 37 0 3 chr11 147800883 147801565 -981907 - L1PA2 LINE L1 0 6155 5476 6642 28 0 1 chr11 147801565 147802418 -981054 + L1PA2 LINE L1 4618 5471 -684 270 278 141 61 chr11 147802418 147802616 -980856 + L2 LINE L2 2721 2934 -380 502 265 92 11 chr11 147802696 147802881 -980591 + MER63A DNA MER1_type 1 200 -10 246 62 0 0 chr11 147803056 147803088 -980384 + (CA)n Simple_repeat Simple_repeat 2 33 0 362 306 9 9 chr11 147803095 147803206 -980266 + L2 LINE L2 3199 3309 -4 582 285 75 15 chr11 147803761 147804028 -979444 + L1MC4 LINE L1 7760 8042 0 251 324 0 78 chr11 147804048 147804190 -979282 - MER5B DNA MER1_type -25 153 23 626 251 130 54 chr11 147804192 147804599 -978873 - LTR16A1 LTR ERVL -8 449 12 889 290 118 16 chr11 147805012 147805377 -978095 - LTR16C LTR ERVL 0 491 90 204 297 62 47 chr11 147805452 147805580 -977892 - MIR SINE MIR -114 148 19 216 0 0 0 chr11 147806395 147806419 -977053 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 223 295 0 16 chr11 147806508 147806569 -976903 + L3 LINE CR1 1516 1575 -2 1752 179 12 38 chr11 147806658 147807004 -976468 - MER44D DNA MER2_type -1 608 2 615 272 37 53 chr11 147807227 147807473 -975999 + MIR SINE MIR 9 250 -12 186 133 0 0 chr11 147808302 147808332 -975140 + (GGGA)n Simple_repeat Simple_repeat 1 30 0 227 214 0 0 chr11 147808751 147808793 -974679 + MIR SINE MIR 109 150 -58 352 301 61 6 chr11 147808955 147809118 -974354 - MIR SINE MIR -14 248 77 363 267 156 7 chr11 147809520 147809655 -973817 - MIR SINE MIR -46 216 62 245 248 277 0 chr11 147810183 147810324 -973148 + MER5A DNA MER1_type 10 189 0 476 268 0 0 chr11 147810379 147810491 -972981 + MIR SINE MIR 45 156 -106 377 372 33 0 chr11 147812375 147812555 -970917 - MIR SINE MIR -24 238 53 421 115 106 39 chr11 147812757 147812861 -970611 - MER53 DNA DNA -24 165 55 271 226 0 0 chr11 147813691 147813753 -969719 - MIR SINE MIR -62 146 85 2348 102 3 0 chr11 147815214 147815519 -967953 + AluSg SINE Alu 1 306 -4 1950 138 61 25 chr11 147815521 147815848 -967624 - MLT1A1 LTR MaLR -4 361 23 22 80 0 0 chr11 147816994 147817044 -966428 + AT_rich Low_complexity Low_complexity 1 50 0 423 0 0 0 chr11 147817551 147817598 -965874 + (TG)n Simple_repeat Simple_repeat 2 48 0 196 250 135 0 chr11 147818510 147818562 -964910 - MIR SINE MIR -87 175 117 228 388 69 47 chr11 147821101 147821421 -962051 + L2 LINE L2 2925 3251 -21 360 323 139 20 chr11 147821515 147821716 -961756 - MIR SINE MIR -7 255 31 198 294 0 20 chr11 147822919 147822970 -960502 - L2 LINE L2 -86 3186 3137 197 65 32 0 chr11 147824111 147824142 -959330 + (TATATG)n Simple_repeat Simple_repeat 3 34 0 268 331 74 8 chr11 147827002 147827123 -956349 - MIR SINE MIR -111 151 23 1390 223 7 10 chr11 147827165 147827470 -956002 - L1MB1 LINE L1 -260 5908 5605 547 158 63 28 chr11 147827469 147827675 -955797 + L1MB1 LINE L1 5912 6156 -33 * 223 301 81 41 chr11 147827848 147827971 -955501 - MIR SINE MIR -55 207 80 2922 173 47 0 chr11 147829793 147830364 -953108 - L1MB1 LINE L1 0 6168 5571 22 0 0 0 chr11 147830469 147830491 -952981 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr11 147832969 147832991 -950481 + (TA)n Simple_repeat Simple_repeat 2 23 0 862 211 37 37 chr11 147833026 147833244 -950228 - MER20 DNA MER1_type -1 218 1 195 268 106 18 chr11 147833245 147833391 -950081 - MIR SINE MIR -35 227 16 2118 110 0 3 chr11 147833529 147833853 -949619 - AluSc SINE Alu 0 309 1 604 353 65 52 chr11 147834323 147834993 -948479 + L2 LINE L2 2579 3258 -14 477 225 33 60 chr11 147837007 147837189 -946283 + MIR SINE MIR 14 190 -72 2317 82 0 22 chr11 147837206 147837522 -945950 - AluSc SINE Alu 0 309 1 206 311 61 67 chr11 147837522 147837686 -945786 - L2 LINE L2 -107 3206 3044 4587 137 20 5 chr11 147837695 147838439 -945033 + L1MA3 LINE L1 5545 6299 -6 21 0 0 0 chr11 147838446 147838467 -945005 + AT_rich Low_complexity Low_complexity 1 21 0 34 0 0 0 chr11 147838977 147839011 -944461 + AT_rich Low_complexity Low_complexity 1 34 0 3130 154 20 14 chr11 147840030 147840583 -942889 - L1MC1 LINE L1 -1 6332 5777 894 190 77 5 chr11 147840628 147840823 -942649 - MER3 DNA MER1_type 0 209 1 255 270 36 45 chr11 147840857 147840932 -942540 - MIR SINE MIR -13 249 174 3904 114 11 23 chr11 147840932 147841539 -941933 + MER4A LTR ERV1 1 600 0 255 270 36 45 chr11 147841539 147841574 -941898 - MIR SINE MIR -88 174 140 467 326 29 29 chr11 147841673 147841845 -941627 - MIR3 SINE MIR -9 199 28 219 321 12 49 chr11 147842216 147842297 -941175 - L2 LINE L2 -7 3265 3188 720 290 107 13 chr11 147842927 147843237 -940235 + L2 LINE L2 2624 2962 -352 509 363 34 31 chr11 147843495 147843853 -939619 - MLT1K LTR MaLR -218 370 12 573 243 69 23 chr11 147844894 147845067 -938405 + MIR SINE MIR 72 252 -10 804 298 145 33 chr11 147846072 147846672 -936800 - L2 LINE L2 0 3313 2636 187 0 121 0 chr11 147846672 147846705 -936767 + GA-rich Low_complexity Low_complexity 1 37 0 4315 144 34 78 chr11 147847301 147848224 -935248 - L1MB3 LINE L1 -2 6181 5300 2410 65 0 3 chr11 147849507 147849815 -933657 + AluY SINE Alu 1 307 -4 5211 158 25 14 chr11 147852011 147852915 -930557 + MER49 LTR ERV1 1 914 -9 1856 128 0 4 chr11 147853842 147854115 -929357 + AluSx SINE Alu 1 272 -40 266 258 92 17 chr11 147854671 147854791 -928681 + LTR16A1 LTR ERVL 280 408 -49 188 389 18 18 chr11 147856188 147856301 -927171 - MIR SINE MIR -101 161 49 358 293 157 56 chr11 147856596 147856883 -926589 - MER102b DNA MER1_type -25 316 1 210 118 0 0 chr11 147857270 147857304 -926168 + (A)n Simple_repeat Simple_repeat 1 34 0 232 244 12 61 chr11 147857343 147857425 -926047 + L2 LINE L2 2706 2783 -531 813 261 76 4 chr11 147857536 147857785 -925687 + L2 LINE L2 2393 2659 -655 914 274 121 24 chr11 147857785 147858158 -925314 - MLT1I LTR MaLR 0 409 1 846 261 81 23 chr11 147858158 147858517 -924955 + L2 LINE L2 2656 3033 -280 191 388 41 10 chr11 147858584 147858682 -924790 + MIR SINE MIR 91 191 -71 245 274 0 32 chr11 147858791 147858853 -924619 - L3 LINE CR1 -1 1576 1517 217 104 0 42 chr11 147858885 147858933 -924539 + (CAAAA)n Simple_repeat Simple_repeat 1 46 0 579 190 9 0 chr11 147858989 147859105 -924367 - MER103 DNA DNA -48 118 2 199 326 0 34 chr11 147859176 147859265 -924207 - MIR3 SINE MIR -41 167 82 2395 132 13 21 chr11 147859281 147859659 -923813 - THE1C LTR MaLR 0 375 1 250 303 0 64 chr11 147860555 147860664 -922808 - MIR SINE MIR -65 197 96 1656 127 22 14 chr11 147860670 147860946 -922526 + AluSx SINE Alu 33 310 -2 222 118 0 0 chr11 147861124 147861158 -922314 + (A)n Simple_repeat Simple_repeat 1 34 0 249 294 63 16 chr11 147861591 147861717 -921755 - L1ME4a LINE L1 -3 6118 5987 191 0 0 93 chr11 147862074 147862117 -921355 + (TAA)n Simple_repeat Simple_repeat 3 41 0 216 67 0 0 chr11 147862287 147862317 -921155 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 256 288 36 65 chr11 147862321 147862460 -921012 + L2 LINE L2 3179 3313 0 193 273 0 0 chr11 147864056 147864100 -919372 + L2 LINE L2 3263 3306 -7 193 254 95 0 chr11 147864118 147864181 -919291 - L2 LINE L2 0 3313 3245 327 315 69 46 chr11 147864362 147864492 -918980 - L2 LINE L2 -4 3268 3136 467 283 26 57 chr11 147864608 147864984 -918488 + MLT1I LTR MaLR 63 391 -18 635 303 120 43 chr11 147865259 147865892 -917580 - L2 LINE L2 -419 2895 2214 634 259 82 78 chr11 147866178 147866472 -917000 + L2 LINE L2 3005 3299 -14 222 37 0 0 chr11 147866473 147866500 -916972 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 458 312 190 20 chr11 147866503 147866897 -916575 - L2 LINE L2 -1898 1416 956 350 272 79 9 chr11 147867088 147867202 -916270 + MIR SINE MIR 32 153 -109 1545 101 14 0 chr11 147868033 147868240 -915232 + AluSg SINE Alu 1 210 -100 386 94 38 68 chr11 147870061 147870564 -912908 + (TA)n Simple_repeat Simple_repeat 1 488 0 337 106 33 78 chr11 147870577 147870757 -912715 + (TA)n Simple_repeat Simple_repeat 2 173 0 273 187 64 18 chr11 147870670 147870841 -912631 + (ATATG)n Simple_repeat Simple_repeat 2 180 0 * 300 232 11 53 chr11 147870895 147870990 -912482 + L1MC4 LINE L1 6614 6704 -1338 3566 153 17 29 chr11 147871000 147872088 -911384 - L1P5 LINE L1 -360 5791 4725 297 191 0 0 chr11 147872090 147872158 -911314 - L1 LINE L1 -1479 4667 4600 508 121 22 0 chr11 147872370 147872461 -911011 + (TA)n Simple_repeat Simple_repeat 1 93 0 271 216 46 52 chr11 147872591 147872744 -910728 + (TA)n Simple_repeat Simple_repeat 1 152 0 2585 90 22 6 chr11 147872749 147873115 -910357 + L1PB1 LINE L1 5778 6149 -2 1649 230 70 16 chr11 147873140 147873653 -909819 - Charlie1 DNA MER1_type -44 2717 2177 7006 70 34 0 chr11 147873653 147874832 -908640 - L1PA7 LINE L1 -7 6147 4950 13612 95 8 32 chr11 147874932 147876988 -906484 - HERVH LTR ERV1 -5705 2008 1 2831 99 92 5 chr11 147876990 147877402 -906070 - LTR7 LTR ERV1 -2 448 1 264 287 70 16 chr11 147877492 147877621 -905851 + MER3 DNA MER1_type 38 126 -83 1996 138 20 0 chr11 147877641 147877945 -905527 - AluSx SINE Alu -2 310 1 253 338 69 18 chr11 147878480 147878682 -904790 + MIR SINE MIR 2 206 -56 363 289 87 0 chr11 147879090 147879194 -904278 - L2 LINE L2 -2 3311 3199 723 303 16 72 chr11 147879662 147879982 -903490 + MLT1I LTR MaLR 57 358 -51 240 211 35 0 chr11 147880211 147880268 -903204 - Charlie1 DNA MER1_type 0 2761 2703 390 218 0 0 chr11 147880268 147880346 -903126 - L1 LINE L1 -1800 4346 4269 * 1267 220 8 39 chr11 147880340 147880634 -902838 + L1 LINE L1 4320 4603 -1543 2269 105 0 10 chr11 147880634 147880940 -902532 + AluY SINE Alu 1 303 -8 1267 220 8 39 chr11 147880940 147881004 -902468 + L1 LINE L1 4603 4667 -1479 30402 112 15 10 chr11 147881136 147884118 -899354 - L1P3 LINE L1 -809 5652 2609 201 74 0 0 chr11 147884118 147884145 -899327 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 30402 112 15 10 chr11 147884145 147886027 -897445 - L1P3 LINE L1 -3852 2609 738 4025 198 27 15 chr11 147886027 147886870 -896602 - Charlie1a DNA MER1_type -573 882 30 245 241 19 0 chr11 147886971 147887025 -896447 + MIR SINE MIR 87 141 -67 356 265 55 134 chr11 147887048 147887175 -896297 - L2 LINE L2 0 3313 3178 186 71 0 0 chr11 147887175 147887203 -896269 + (TG)n Simple_repeat Simple_repeat 2 29 0 356 265 55 134 chr11 147887203 147887441 -896031 - L2 LINE L2 -135 3178 2977 561 279 147 10 chr11 147887552 147887756 -895716 - MIR SINE MIR 0 262 31 28 29 0 0 chr11 147887841 147887876 -895596 + AT_rich Low_complexity Low_complexity 1 35 0 2110 101 71 77 chr11 147889223 147889589 -893883 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr11 147889843 147889864 -893608 + AT_rich Low_complexity Low_complexity 1 21 0 182 150 25 0 chr11 147890802 147890842 -892630 + (CA)n Simple_repeat Simple_repeat 2 42 0 2340 83 3 0 chr11 147891838 147892138 -891334 - AluY SINE Alu -10 301 1 380 171 30 4 chr11 147893153 147893239 -890233 + MLT1F1 LTR MaLR 493 567 0 996 246 160 35 chr11 147894368 147894518 -888954 + MLT2B2 LTR ERVL 1 131 -384 2107 175 53 22 chr11 147894518 147894935 -888537 - MSTB1 LTR MaLR 0 432 3 996 246 160 35 chr11 147894935 147895200 -888272 + MLT2B2 LTR ERVL 131 479 -36 432 0 0 0 chr11 147895200 147895248 -888224 + (CA)n Simple_repeat Simple_repeat 2 49 0 996 246 160 35 chr11 147895248 147895282 -888190 + MLT2B2 LTR ERVL 479 507 -8 199 336 38 38 chr11 147897058 147897189 -886283 + L2 LINE L2 1872 2002 -1312 2301 279 61 17 chr11 147897200 147898004 -885468 - L1ME3A LINE L1 -4 6166 5328 2432 271 80 46 chr11 147898083 147899480 -883992 - L1ME3A LINE L1 -807 5339 3895 2388 87 0 7 chr11 147901902 147902211 -881261 - AluY SINE Alu -4 307 1 26 82 0 0 chr11 147902221 147902282 -881190 + AT_rich Low_complexity Low_complexity 1 61 0 258 284 57 0 chr11 147902939 147903027 -880445 - MER5A DNA MER1_type -87 102 10 1040 211 51 13 chr11 147904246 147904483 -878989 - MIR SINE MIR -2 260 15 232 229 0 33 chr11 147906123 147906184 -877288 - MLT1J LTR MaLR -204 307 249 297 291 91 18 chr11 147906429 147906539 -876933 + MIR SINE MIR 66 183 -79 685 270 68 32 chr11 147906776 147907024 -876448 + MIR SINE MIR 1 257 -5 2056 110 6 44 chr11 147907797 147908115 -875357 - AluSx SINE Alu -6 306 1 1153 67 0 0 chr11 147908115 147908250 -875222 - AluSq/x SINE Alu -178 135 1 420 251 183 16 chr11 147908980 147909171 -874301 + MIR SINE MIR 24 246 -16 314 269 67 0 chr11 147909691 147909795 -873677 + MIR SINE MIR 79 189 -73 547 282 49 45 chr11 147911057 147911302 -872170 - MIR SINE MIR -4 258 13 612 276 12 0 chr11 147911505 147911668 -871804 - MER5A DNA MER1_type -21 168 4 336 345 0 0 chr11 147913347 147913434 -870038 + L2 LINE L2 3186 3272 0 262 132 52 0 chr11 147913497 147913547 -869925 + MIR SINE MIR 111 171 -37 332 257 150 18 chr11 147914582 147914695 -868777 + MIR3 SINE MIR 3 130 -78 1896 197 70 8 chr11 147914972 147915343 -868129 + MSTD LTR MaLR 1 394 -2 381 296 45 30 chr11 147915352 147915484 -867988 - MIR SINE MIR -121 141 8 262 313 62 49 chr11 147915856 147916000 -867472 - MIR SINE MIR -6 256 111 204 273 70 84 chr11 147916107 147916250 -867222 + L2 LINE L2 2933 3073 -199 317 271 12 12 chr11 147916357 147916442 -867030 + MER3 DNA MER1_type 3 87 -122 258 288 162 0 chr11 147917892 147918003 -865469 + MIR3 SINE MIR 32 160 -48 264 111 0 22 chr11 147918183 147918228 -865244 + MIR3 SINE MIR 151 194 -14 401 235 48 76 chr11 147918841 147918987 -864485 - L1ME2 LINE L1 0 6334 6031 386 243 36 0 chr11 147919062 147919173 -864299 + L1ME2 LINE L1 6031 6145 -19 205 372 18 18 chr11 147919174 147919287 -864185 - MIR SINE MIR -148 114 2 185 436 103 0 chr11 147919342 147919459 -864013 - MIR3 SINE MIR -49 159 31 393 22 0 0 chr11 147919775 147919821 -863651 + (CA)n Simple_repeat Simple_repeat 2 47 0 2190 119 7 0 chr11 147920696 147920989 -862483 - AluSx SINE Alu -17 295 1 437 339 54 12 chr11 147921711 147921953 -861519 + MIR SINE MIR 11 262 0 316 298 50 0 chr11 147923101 147923242 -860230 - L2 LINE L2 -1 3312 3165 35971 80 9 7 chr11 147925680 147931363 -852109 + L1PA6 LINE L1 459 6154 0 424 258 53 8 chr11 147931524 147931656 -851816 - MIR SINE MIR -120 142 5 22 0 0 0 chr11 147933029 147933051 -850421 + AT_rich Low_complexity Low_complexity 1 22 0 193 363 34 7 chr11 147933347 147933493 -849979 - L2 LINE L2 -213 3059 2910 267 349 87 32 chr11 147933589 147933901 -849571 - L2 LINE L2 -479 2835 2507 599 284 186 21 chr11 147933924 147934705 -848767 + L2 LINE L2 2402 3313 0 306 0 0 0 chr11 147935686 147935720 -847752 + (TG)n Simple_repeat Simple_repeat 1 34 0 1122 215 44 62 chr11 147935808 147936195 -847277 + MER39 LTR ERV1 67 638 -69 209 241 17 0 chr11 147936235 147936293 -847179 + (TA)n Simple_repeat Simple_repeat 2 60 0 349 293 77 1 chr11 147936337 147936491 -846981 + MIR SINE MIR 22 184 -62 623 296 85 41 chr11 147937589 147937954 -845518 + L2 LINE L2 2927 3307 -6 754 261 29 33 chr11 147937959 147938200 -845272 + MIR SINE MIR 13 252 -10 225 277 0 0 chr11 147938276 147938341 -845131 + MIR SINE MIR 198 262 0 194 103 0 26 chr11 147938377 147938416 -845056 + (TTA)n Simple_repeat Simple_repeat 1 38 0 1579 238 3 12 chr11 147939152 147939472 -844000 + L1M2 LINE L1 792 1108 -5741 21 36 0 0 chr11 147939606 147939634 -843838 + GC_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr11 147939653 147939676 -843796 + (A)n Simple_repeat Simple_repeat 1 23 0 192 298 84 11 chr11 147939791 147939969 -843503 + L2 LINE L2 2816 3006 -266 461 238 53 13 chr11 147942270 147942421 -841051 - MLT1J LTR MaLR -354 157 1 2908 258 88 28 chr11 147942753 147944159 -839313 - L1MEc LINE L1 -3873 2523 1033 272 242 16 0 chr11 147944162 147944224 -839248 - MER58 DNA MER1_type 0 2420 2358 344 353 143 10 chr11 147944224 147944524 -838948 - L1MEc LINE L1 -6025 371 32 1984 154 6 10 chr11 147945516 147945827 -837645 - AluJb SINE Alu -2 310 1 370 241 179 53 chr11 147946104 147946311 -837161 + MER5C DNA MER1_type 2 234 -90 521 130 22 0 chr11 147946314 147946406 -837066 + CT-rich Low_complexity Low_complexity 3 96 0 240 255 10 71 chr11 147946436 147946534 -836938 + L1MD1 LINE L1 6139 6230 -12 232 119 0 0 chr11 147946568 147946610 -836862 + MER5C DNA MER1_type 280 321 -3 757 260 136 0 chr11 147946836 147947071 -836401 - MLT1H LTR MaLR -123 426 160 321 181 32 0 chr11 147950041 147950135 -833337 + CT-rich Low_complexity Low_complexity 5 101 0 2102 100 36 7 chr11 147950179 147950458 -833014 - AluSx SINE Alu -25 287 1 472 342 0 5 chr11 147950854 147951038 -832434 - MER5A DNA MER1_type 0 189 7 206 308 0 0 chr11 147951116 147951168 -832304 - L2 LINE L2 -14 3258 3207 306 0 0 0 chr11 147951982 147952016 -831456 + (TG)n Simple_repeat Simple_repeat 1 34 0 180 0 0 0 chr11 147953212 147953232 -830240 + (A)n Simple_repeat Simple_repeat 1 20 0 239 241 12 0 chr11 147953530 147953613 -829859 + (TG)n Simple_repeat Simple_repeat 1 84 0 365 277 94 50 chr11 147954087 147954289 -829183 - MIR SINE MIR -37 225 15 352 262 49 0 chr11 147954681 147954803 -828669 + MIR SINE MIR 135 262 0 2440 84 3 3 chr11 147955023 147955332 -828140 + AluSc SINE Alu 1 309 0 24 0 0 0 chr11 147955501 147955525 -827947 + GC_rich Low_complexity Low_complexity 1 24 0 306 106 0 0 chr11 147955544 147955591 -827881 + (A)n Simple_repeat Simple_repeat 1 47 0 24 0 0 0 chr11 147956203 147956227 -827245 + AT_rich Low_complexity Low_complexity 1 24 0 212 212 274 75 chr11 147956289 147956435 -827037 + MER5B DNA MER1_type 1 175 -3 2360 137 17 3 chr11 147957506 147957863 -825609 + THE1B LTR MaLR 1 362 -2 440 310 52 61 chr11 147957866 147958095 -825377 + MIR SINE MIR 26 252 -10 22 56 0 0 chr11 147959249 147959285 -824187 + AT_rich Low_complexity Low_complexity 1 36 0 211 331 108 29 chr11 147959640 147959779 -823693 - L2 LINE L2 0 3272 3123 21 36 0 0 chr11 147962416 147962444 -821028 + AT_rich Low_complexity Low_complexity 1 28 0 422 248 50 50 chr11 147962794 147962955 -820517 + MIR SINE MIR 28 188 -74 264 257 0 14 chr11 147962945 147963015 -820457 + L2 LINE L2 3193 3261 -52 * 355 337 71 0 chr11 147963685 147963845 -819627 + MIR SINE MIR 45 213 -49 275 246 15 0 chr11 147964944 147965009 -818463 + CT-rich Low_complexity Low_complexity 3 68 0 425 230 10 165 chr11 147965243 147965534 -817938 + MER112 DNA MER1_type 5 250 -10 1846 174 26 23 chr11 147967241 147967591 -815881 - MLT1A1 LTR MaLR -14 351 1 240 188 0 0 chr11 147969974 147970038 -813434 + GA-rich Low_complexity Low_complexity 1 64 0 2430 91 28 22 chr11 147972195 147972591 -810881 - LTR7 LTR ERV1 -8 442 1 2350 111 50 13 chr11 147972591 147972969 -810503 - HERVH LTR ERV1 0 7713 7322 1390 136 18 5 chr11 147972967 147973187 -810285 - HERVH LTR ERV1 -1894 5819 5597 * 4595 131 0 3 chr11 147973177 147973847 -809625 - HERVH LTR ERV1 -2558 5155 4488 3395 113 4 8 chr11 147973849 147974353 -809119 - HERVH LTR ERV1 -3720 3993 3492 866 136 27 0 chr11 147974343 147974490 -808982 - HERVH LTR ERV1 -4423 3290 3140 * 14266 101 7 14 chr11 147974484 147976546 -806926 - HERVH LTR ERV1 -4726 2987 940 200 306 108 25 chr11 147976742 147976899 -806573 - MIR SINE MIR -3 259 90 232 172 16 16 chr11 147977000 147977064 -806408 + CT-rich Low_complexity Low_complexity 1 64 0 349 198 22 0 chr11 147977099 147977190 -806282 + CT-rich Low_complexity Low_complexity 3 95 0 180 280 30 60 chr11 147977605 147977705 -805767 - MIR SINE MIR -93 169 73 2045 122 3 7 chr11 147978191 147978495 -804977 - AluSx SINE Alu -9 303 1 204 40 0 0 chr11 147979626 147979651 -803821 + (T)n Simple_repeat Simple_repeat 1 25 0 708 296 147 46 chr11 148029721 148030727 -752745 + L2 LINE L2 2170 3292 -21 568 204 0 9 chr11 148030992 148031100 -752372 - Tigger7 DNA MER2_type 0 2487 2381 6213 60 14 1 chr11 148031211 148031990 -751482 + L1PA6 LINE L1 5353 6141 -13 540 251 196 68 chr11 148032029 148032412 -751060 + HAL1 LINE L1 1406 1837 -670 765 221 140 47 chr11 148032462 148032645 -750827 + HAL1 LINE L1 2046 2211 -296 2571 54 0 13 chr11 148032645 148032960 -750512 + AluY SINE Alu 1 311 0 765 221 140 47 chr11 148032960 148033098 -750374 + HAL1 LINE L1 2211 2397 -110 2120 176 47 5 chr11 148033201 148033581 -749891 - MSTB LTR MaLR -15 411 16 796 205 16 22 chr11 148033891 148034076 -749396 + MER5A DNA MER1_type 4 187 -2 353 295 72 0 chr11 148034266 148034405 -749067 - MIR SINE MIR -27 235 87 234 91 0 0 chr11 148034827 148034860 -748612 + (GAAAA)n Simple_repeat Simple_repeat 1 33 0 217 211 0 0 chr11 148036865 148036903 -746569 + polypyrimidine Low_complexity Low_complexity 1 38 0 424 241 0 83 chr11 148038005 148038138 -745334 - L2 LINE L2 0 3313 3192 395 260 142 73 chr11 148039552 148039771 -743701 + HAL1 LINE L1 40 273 -2234 441 0 0 0 chr11 148039783 148039832 -743640 + (T)n Simple_repeat Simple_repeat 1 49 0 886 197 16 21 chr11 148039978 148040166 -743306 + MER5A DNA MER1_type 2 188 -1 338 241 109 40 chr11 148040206 148040380 -743092 + HAL1 LINE L1 642 827 -1680 396 268 146 46 chr11 148040391 148040652 -742820 + HAL1 LINE L1 1030 1316 -1191 38317 92 6 8 chr11 148040701 148046023 -737449 + L1P LINE L1 6 5315 -831 224 225 0 0 chr11 148046162 148046202 -737270 + polypyrimidine Low_complexity Low_complexity 4 43 0 2130 117 3 17 chr11 148047251 148047550 -735922 + AluSq SINE Alu 1 295 -18 316 247 0 26 chr11 148047571 148047648 -735824 + MIR SINE MIR 62 136 -72 250 296 0 4 chr11 148048081 148048184 -735288 - MIR SINE MIR -62 146 48 607 285 47 4 chr11 148049167 148049402 -734070 - L1ME4a LINE L1 -225 5896 5652 230 376 43 0 chr11 148049430 148049547 -733925 - MIR SINE MIR -55 153 32 249 358 147 0 chr11 148050119 148050323 -733149 - MIR SINE MIR -13 249 16 262 263 12 12 chr11 148050637 148050717 -732755 + MER116 DNA Mariner 1 80 0 353 307 31 24 chr11 148051141 148051268 -732204 + MIR SINE MIR 15 142 -120 288 0 0 0 chr11 148051683 148051715 -731757 + (CA)n Simple_repeat Simple_repeat 1 32 0 289 292 224 5 chr11 148052048 148052240 -731232 + MIR SINE MIR 15 248 -14 540 0 0 0 chr11 148052503 148052563 -730909 + (TA)n Simple_repeat Simple_repeat 2 61 0 399 332 22 9 chr11 148053556 148053788 -729684 + L3b LINE CR1 1141 1375 -208 2094 311 56 54 chr11 148054034 148055339 -728133 + L2 LINE L2 977 2283 -1031 1845 217 92 29 chr11 148055381 148055902 -727570 + HsTC2 DNA Tc2 33 586 -1312 219 69 0 0 chr11 148056249 148056278 -727194 + (CAG)n Simple_repeat Simple_repeat 1 29 0 3104 133 9 102 chr11 148056321 148056976 -726496 - L1PB4 LINE L1 0 6156 5563 275 301 52 29 chr11 148057327 148057463 -726009 - L2 LINE L2 -963 2351 2213 1273 253 108 42 chr11 148057463 148057997 -725475 + MLT1F1 LTR MaLR 1 567 0 225 0 0 0 chr11 148058106 148058131 -725341 + (A)n Simple_repeat Simple_repeat 1 25 0 221 304 87 55 chr11 148058144 148058489 -724983 - L2 LINE L2 -1218 2096 1741 756 250 60 32 chr11 148059702 148059918 -723554 + MER58A DNA MER1_type 1 222 -2 393 278 15 8 chr11 148063271 148063404 -720068 - MIR3 SINE MIR -29 179 46 268 231 132 77 chr11 148064088 148064270 -719202 - MLT1J2 LTR MaLR -152 298 107 234 370 79 0 chr11 148064618 148064745 -718727 + MER5B DNA MER1_type 1 137 -41 283 298 12 0 chr11 148069372 148069456 -714016 - MIR SINE MIR -89 173 89 1490 151 45 119 chr11 148070981 148071318 -712154 + AluJo SINE Alu 1 312 0 856 108 78 0 chr11 148071548 148071677 -711795 - MER85 DNA T2_type 0 139 1 191 387 0 0 chr11 148071871 148071946 -711526 + L2 LINE L2 2985 3059 -213 432 0 0 0 chr11 148072315 148072363 -711109 + (TG)n Simple_repeat Simple_repeat 2 49 0 359 261 155 50 chr11 148074704 148074865 -708607 + MIR3 SINE MIR 3 180 -28 232 398 0 10 chr11 148076283 148076381 -707091 - MIR3 SINE MIR -102 106 10 788 174 34 7 chr11 148076385 148076534 -706938 + MER5A DNA MER1_type 23 175 -14 899 166 16 21 chr11 148076733 148076920 -706552 + MER53 DNA DNA 2 187 -2 202 211 0 0 chr11 148076950 148076988 -706484 + T-rich Low_complexity Low_complexity 5 42 0 335 316 15 45 chr11 148077693 148077826 -705646 + MIR3 SINE MIR 40 168 -40 224 139 0 0 chr11 148078814 148078850 -704622 - MIR3 SINE MIR -2 206 171 253 273 0 0 chr11 148079816 148079871 -703601 + (TCCA)n Simple_repeat Simple_repeat 3 57 0 279 0 0 0 chr11 148079927 148079958 -703514 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 696 293 105 17 chr11 148080129 148080652 -702820 - L2 LINE L2 -180 3133 2560 1614 224 102 26 chr11 148080837 148081306 -702166 + MLT1D LTR MaLR 1 505 0 246 277 0 31 chr11 148083725 148083790 -699682 - MIR SINE MIR 0 262 200 455 198 0 0 chr11 148083800 148083881 -699591 + MER5A DNA MER1_type 11 91 -98 467 290 72 21 chr11 148083952 148084145 -699327 - MIR SINE MIR -54 208 6 213 132 0 0 chr11 148085351 148085389 -698083 + (T)n Simple_repeat Simple_repeat 1 38 0 1747 84 4 40 chr11 148085389 148085640 -697832 - AluY SINE Alu -69 242 1 2112 124 0 6 chr11 148085640 148085953 -697519 - AluSx SINE Alu 0 312 1 1203 212 138 51 chr11 148086332 148086723 -696749 - MER110A LTR ERV1 0 468 44 653 356 119 9 chr11 148088493 148089046 -694426 + L2 LINE L2 1886 2499 -815 199 385 69 43 chr11 148089158 148089506 -693966 + L2 LINE L2 2916 3272 0 1781 133 0 63 chr11 148089526 148089842 -693630 + AluSx SINE Alu 3 298 -14 214 296 84 0 chr11 148090125 148090196 -693276 + MIR SINE MIR 117 193 -69 180 326 54 78 chr11 148090645 148090774 -692698 + L2 LINE L2 3090 3215 -57 252 188 188 0 chr11 148090819 148090883 -692589 - L2 LINE L2 0 3313 3238 238 363 20 39 chr11 148091199 148091301 -692171 - MIR SINE MIR -84 124 25 303 279 132 41 chr11 148093041 148093238 -690234 - L2 LINE L2 -85 3228 3014 924 162 0 0 chr11 148095295 148095443 -688029 - AluJb SINE Alu -13 299 152 1053 212 71 48 chr11 148095461 148095915 -687557 + MLT1F1 LTR MaLR 56 567 0 526 311 6 6 chr11 148096230 148096391 -687081 - MIR SINE MIR -21 241 81 1843 106 4 0 chr11 148096391 148096647 -686825 + AluY SINE Alu 37 293 -18 25 0 0 0 chr11 148096805 148096830 -686642 + AT_rich Low_complexity Low_complexity 1 25 0 771 245 51 10 chr11 148097169 148097365 -686107 - MIR SINE MIR 0 262 59 581 220 87 58 chr11 148097398 148097571 -685901 - MLT1F1 LTR MaLR -263 304 127 1687 145 109 10 chr11 148100262 148100565 -682907 + MER44D DNA MER2_type 7 609 0 1105 176 10 0 chr11 148102000 148102204 -681268 - MER65C LTR ERV1 0 461 256 786 89 105 0 chr11 148102205 148102329 -681143 + MER85 DNA T2_type 1 137 -2 * 1563 141 11 53 chr11 148102329 148102598 -680874 - MER65C LTR ERV1 -204 257 1 478 264 226 38 chr11 148103232 148103497 -679975 - L2 LINE L2 -2 3311 2997 831 278 179 30 chr11 148103691 148103878 -679594 - L2 LINE L2 -891 2423 2265 1280 250 55 14 chr11 148103878 148104226 -679246 + MLT1A1 LTR MaLR 1 362 -3 831 278 179 30 chr11 148104226 148104531 -678941 - L2 LINE L2 -1049 2265 1858 257 287 0 83 chr11 148104776 148104884 -678588 + L2 LINE L2 3169 3267 -5 634 257 56 0 chr11 148104957 148105136 -678336 - MER5A DNA MER1_type 0 189 1 1029 293 270 25 chr11 148105673 148106607 -676865 + L3 LINE CR1 250 1412 -165 2375 83 0 3 chr11 148106722 148107034 -676438 - AluSx SINE Alu -1 311 1 217 302 139 0 chr11 148107050 148107136 -676336 + L3 LINE CR1 1441 1538 -39 1739 198 29 0 chr11 148107657 148108036 -675436 + L1MA9 LINE L1 5923 6312 0 1815 222 86 21 chr11 148108105 148108583 -674889 + L1ME1 LINE L1 5647 6155 -11 226 253 27 27 chr11 148110692 148110767 -672705 + CT-rich Low_complexity Low_complexity 1 75 0 486 281 73 18 chr11 148112462 148112626 -670846 - MIR SINE MIR -6 256 84 282 274 14 0 chr11 148113123 148113196 -670276 + (CA)n Simple_repeat Simple_repeat 1 74 0 375 232 50 0 chr11 148113790 148113889 -669583 - MER112 DNA MER1_type 0 260 157 236 156 22 0 chr11 148115458 148115503 -667969 - MIR SINE MIR -39 223 178 338 246 16 71 chr11 148115506 148115632 -667840 - MIR SINE MIR -58 204 86 229 234 160 11 chr11 148115687 148115781 -667691 + MIR SINE MIR 19 126 -82 624 289 123 13 chr11 148115800 148116035 -667437 + MIR SINE MIR 2 262 0 190 367 0 13 chr11 148116052 148116131 -667341 + MIR3 SINE MIR 124 201 -7 307 288 96 24 chr11 148117484 148117609 -665863 - L2 LINE L2 -2 3270 3137 273 135 0 0 chr11 148118642 148118694 -664778 + (TG)n Simple_repeat Simple_repeat 2 53 0 378 263 166 29 chr11 148118875 148119050 -664422 - MIR SINE MIR -52 210 12 296 288 0 0 chr11 148119212 148119292 -664180 - MIR SINE MIR 0 262 183 632 316 150 67 chr11 148120001 148121065 -662407 + L2 LINE L2 1572 2724 -590 22 35 0 0 chr11 148121462 148121491 -661981 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr11 148121680 148121700 -661772 + (GGA)n Simple_repeat Simple_repeat 2 21 0 203 125 125 0 chr11 148122092 148122132 -661340 - L2 LINE L2 -7 3306 3262 210 200 0 40 chr11 148122163 148122213 -661259 + L2 LINE L2 3265 3312 -1 294 206 0 0 chr11 148122218 148122286 -661186 + GA-rich Low_complexity Low_complexity 2 69 0 233 284 7 141 chr11 148123422 148123587 -659885 - MIR3 SINE MIR -95 113 4 192 304 87 33 chr11 148124688 148124780 -658692 + L2 LINE L2 3216 3312 -1 216 329 151 48 chr11 148125296 148125442 -658030 - L2 LINE L2 0 3272 3112 246 276 5 146 chr11 148125480 148125679 -657793 - L2 LINE L2 -278 2994 2824 1224 214 59 43 chr11 148126001 148126393 -657079 + MER96B DNA MER1_type? 20 417 0 26 0 0 0 chr11 148127988 148128014 -655458 + AT_rich Low_complexity Low_complexity 1 26 0 246 329 67 34 chr11 148129535 148129684 -653788 - MIR SINE MIR -69 193 40 194 371 0 0 chr11 148130958 148131028 -652444 - L2 LINE L2 -2 3270 3201 288 253 105 32 chr11 148131199 148131294 -652178 + MIR SINE MIR 158 259 -3 382 326 94 0 chr11 148132099 148132285 -651187 + MIR SINE MIR 58 256 -6 208 338 0 0 chr11 148132912 148132989 -650483 + CT-rich Low_complexity Low_complexity 3 79 0 322 301 75 15 chr11 148133555 148133688 -649784 - MIR SINE MIR -87 175 35 341 308 104 45 chr11 148133754 148134062 -649410 - LTR33 LTR ERVL 0 521 196 731 285 97 40 chr11 148134331 148134844 -648628 - MLT1H LTR MaLR -2 588 1 2342 158 48 7 chr11 148136035 148136447 -647025 - MSTB1 LTR MaLR 0 432 4 682 201 81 75 chr11 148136556 148136730 -646742 - MLT1G1 LTR MaLR 0 595 381 1229 297 131 6 chr11 148136814 148137289 -646183 + MER69 DNA AcHobo 41 574 -1952 1583 212 79 2 chr11 148137296 148137740 -645732 + MER69 DNA AcHobo 2029 2506 -20 666 283 62 37 chr11 148138083 148138327 -645145 - MIR SINE MIR 0 262 13 236 351 46 67 chr11 148138319 148138557 -644915 - MIR SINE MIR -2 260 22 * 1467 155 3 71 chr11 148139124 148139434 -644038 + AluJb SINE Alu 1 289 -23 383 275 65 29 chr11 148139778 148139916 -643556 - MIR SINE MIR -42 220 78 180 111 0 0 chr11 148140351 148140378 -643094 + (TTA)n Simple_repeat Simple_repeat 2 28 0 232 345 83 54 chr11 148140385 148140663 -642809 - L2 LINE L2 -2 3270 2985 398 286 18 0 chr11 148140681 148140793 -642679 + MER81 DNA DNA 1 114 0 2070 112 0 3 chr11 148143372 148143677 -639795 - AluSg SINE Alu -6 304 1 264 143 41 0 chr11 148143789 148143838 -639634 + LTR10B LTR ERV1 1 51 -496 2550 126 134 26 chr11 148143860 148144352 -639120 + LTR10A LTR ERV1 1 545 -64 502 322 164 9 chr11 148144371 148144585 -638887 + MIR SINE MIR 16 262 0 219 114 0 0 chr11 148144716 148144751 -638721 + (CA)n Simple_repeat Simple_repeat 2 36 0 299 313 112 4 chr11 148145393 148145552 -637920 + MIR SINE MIR 9 184 -63 613 306 113 20 chr11 148145590 148145943 -637529 + L2 LINE L2 2550 2935 -379 536 270 5 79 chr11 148146534 148146723 -636749 - MIR SINE MIR -10 252 78 258 32 0 0 chr11 148146728 148146759 -636713 + (TA)n Simple_repeat Simple_repeat 2 32 0 3241 39 0 10 chr11 148146759 148147149 -636323 - L1PA5 LINE L1 -4 6150 5765 232 314 7 13 chr11 148147171 148147246 -636226 - MIR SINE MIR -123 85 9 1356 270 144 52 chr11 148147315 148148031 -635441 - L2 LINE L2 -89 3224 2353 240 86 0 0 chr11 148148031 148148066 -635406 + (TG)n Simple_repeat Simple_repeat 1 35 0 1356 270 144 52 chr11 148148066 148148281 -635191 - L2 LINE L2 -960 2353 2159 1113 207 129 36 chr11 148148286 148148619 -634853 + MLT1A1 LTR MaLR 1 364 -1 350 289 32 74 chr11 148148812 148149002 -634470 + L2 LINE L2 3125 3306 -7 770 292 133 71 chr11 148149022 148149698 -633774 - L2 LINE L2 -1358 1956 1224 1601 156 57 14 chr11 148149698 148149981 -633491 - AluJb SINE Alu -13 299 5 770 292 133 71 chr11 148149981 148150089 -633383 - L2 LINE L2 -2090 1224 1124 376 278 112 12 chr11 148151247 148151416 -632056 + MIR SINE MIR 72 257 -5 419 243 10 10 chr11 148151543 148151646 -631826 + MER5A DNA MER1_type 4 106 -83 373 264 88 34 chr11 148151673 148151839 -631633 - MIR3 SINE MIR -26 182 1 423 216 29 20 chr11 148152008 148152113 -631359 + MIR3 SINE MIR 56 161 -47 6080 23 0 0 chr11 148153379 148154085 -629387 - L1PA2 LINE L1 -1138 5008 4303 7776 16 2 0 chr11 148154085 148155236 -628236 + L1PA2 LINE L1 5014 6166 0 183 314 39 39 chr11 148155887 148155989 -627483 - MIR SINE MIR -70 192 91 245 330 22 11 chr11 148156635 148156726 -626746 + MIR SINE MIR 21 112 -150 261 330 102 0 chr11 148157139 148157257 -626215 + MIR3 SINE MIR 49 178 -30 22 35 0 0 chr11 148160209 148160238 -623234 + AT_rich Low_complexity Low_complexity 1 29 0 378 347 83 20 chr11 148160313 148160557 -622915 + MIR SINE MIR 1 262 0 261 259 37 56 chr11 148160586 148160694 -622778 + MER5A DNA MER1_type 34 139 -50 21 0 0 0 chr11 148160715 148160736 -622736 + AT_rich Low_complexity Low_complexity 1 21 0 1560 153 3 44 chr11 148160744 148161066 -622406 - AluJb SINE Alu 0 310 1 1635 161 3 21 chr11 148161102 148161387 -622085 - AluJo SINE Alu -30 282 3 1957 125 24 0 chr11 148162550 148162846 -620626 - AluSq SINE Alu -10 303 1 260 324 27 45 chr11 148164263 148164374 -619098 - L2 LINE L2 -14 3299 3191 307 276 86 17 chr11 148164389 148164505 -618967 - MIR SINE MIR -66 142 19 299 291 44 70 chr11 148166373 148166600 -616872 - MIR SINE MIR 0 262 42 1275 160 22 13 chr11 148166984 148167215 -616257 - MSTB1 LTR MaLR 0 432 200 2032 125 27 0 chr11 148167217 148167514 -615958 + AluSg SINE Alu 1 305 -5 1261 36 0 24 chr11 148167659 148167825 -615647 - AluY SINE Alu 0 311 150 811 186 14 123 chr11 148167825 148168045 -615427 - MSTB1 LTR MaLR -225 201 6 509 300 78 35 chr11 148168840 148169070 -614402 + L3b LINE CR1 1126 1365 -218 571 311 40 34 chr11 148169071 148169248 -614224 + MER5B DNA MER1_type 1 178 0 1980 128 23 3 chr11 148169772 148170078 -613394 + AluSx SINE Alu 1 312 0 858 310 100 32 chr11 148170324 148170763 -612709 - MLT1H1 LTR MaLR -84 471 3 213 214 0 0 chr11 148170865 148170907 -612565 + MIR SINE MIR 123 164 -98 539 306 31 25 chr11 148170914 148171110 -612362 - LTR16A LTR ERVL -6 444 248 327 325 86 0 chr11 148171115 148171266 -612206 + MIR SINE MIR 89 252 -10 354 325 100 16 chr11 148171302 148171551 -611921 - LTR16A LTR ERVL -180 270 1 579 240 32 0 chr11 148171970 148172095 -611377 + MIR SINE MIR 48 176 -86 503 304 67 28 chr11 148172268 148172504 -610968 - MIR SINE MIR -10 252 12 1114 180 57 14 chr11 148174168 148174379 -609093 + MER46A DNA MER2_type 4 223 -13 667 279 5 0 chr11 148174573 148174770 -608702 - MIR SINE MIR 0 262 65 197 339 0 0 chr11 148174938 148175000 -608472 + L2 LINE L2 3208 3269 -3 241 224 15 60 chr11 148175213 148175280 -608192 + L2 LINE L2 3202 3265 -7 287 284 0 0 chr11 148176440 148176507 -606965 + L2 LINE L2 3247 3313 0 201 337 56 11 chr11 148177311 148177400 -606072 - MIR SINE MIR -111 151 59 1571 166 23 66 chr11 148177400 148177702 -605770 - AluJb SINE Alu -19 293 5 244 225 28 14 chr11 148177917 148177988 -605484 - L2 LINE L2 -15 3298 3227 4381 187 27 18 chr11 148178317 148179211 -604261 - L1MB4 LINE L1 -3 6177 5276 26 0 0 0 chr11 148179322 148179348 -604124 + AT_rich Low_complexity Low_complexity 1 26 0 251 175 18 0 chr11 148180611 148180668 -602804 + (CA)n Simple_repeat Simple_repeat 2 59 0 205 258 98 61 chr11 148181459 148181591 -601881 - L2 LINE L2 -23 3290 3154 21 0 0 0 chr11 148183441 148183462 -600010 + AT_rich Low_complexity Low_complexity 1 21 0 434 271 48 7 chr11 148184481 148184668 -598804 - MIR3 SINE MIR -4 204 6 1058 113 65 16 chr11 148184996 148185182 -598290 + L1MA7 LINE L1 6003 6197 -94 1806 159 0 36 chr11 148185182 148185490 -597982 - AluJb SINE Alu -3 309 13 256 303 28 28 chr11 148185854 148185963 -597509 - L2 LINE L2 -286 3027 2919 439 231 19 19 chr11 148186155 148186259 -597213 - MER81 DNA DNA -10 104 1 2135 140 0 7 chr11 148186416 148186724 -596748 - AluSg SINE Alu -4 306 1 23 54 0 0 chr11 148190463 148190500 -592972 + AT_rich Low_complexity Low_complexity 1 37 0 258 248 0 78 chr11 148191527 148191668 -591804 + T-rich Low_complexity Low_complexity 2 131 0 271 299 94 70 chr11 148191772 148192070 -591402 - L2 LINE L2 -3 3269 2965 3259 192 37 16 chr11 148193292 148193994 -589478 - LTR62 LTR ERVK -2 717 1 411 311 71 18 chr11 148194239 148194464 -589008 + MIR SINE MIR 20 256 -6 25 0 0 0 chr11 148194634 148194659 -588813 + AT_rich Low_complexity Low_complexity 1 25 0 186 43 0 0 chr11 148195287 148195310 -588162 + (TGAA)n Simple_repeat Simple_repeat 2 24 0 51 31 0 0 chr11 148195628 148195693 -587779 + AT_rich Low_complexity Low_complexity 1 65 0 262 282 0 0 chr11 148196403 148196474 -586998 - MIR SINE MIR -17 245 175 1392 172 4 37 chr11 148196477 148196592 -586880 + AluJo SINE Alu 54 171 -141 2073 158 119 8 chr11 148196592 148196977 -586495 + MSTA LTR MaLR 1 428 0 1392 172 4 37 chr11 148196977 148197105 -586367 + AluJo SINE Alu 171 289 -23 22 0 0 0 chr11 148197258 148197280 -586192 + AT_rich Low_complexity Low_complexity 1 22 0 624 214 0 0 chr11 148197287 148197413 -586059 - FLAM_A SINE Alu 0 142 17 230 333 73 32 chr11 148197721 148197844 -585628 - MER103 DNA DNA -35 131 4 251 341 0 11 chr11 148198377 148198465 -585007 + GA-rich Low_complexity Low_complexity 2 88 0 464 335 32 12 chr11 148198469 148198717 -584755 + L1ME3A LINE L1 5476 5728 -442 489 0 0 16 chr11 148198720 148198782 -584690 + AluY SINE Alu 239 299 -12 2408 67 3 10 chr11 148198793 148199091 -584381 + AluY SINE Alu 1 296 -15 762 233 40 135 chr11 148199091 148199572 -583900 + L1ME3A LINE L1 5717 6151 -19 217 273 23 57 chr11 148200467 148200555 -582917 + L2 LINE L2 3228 3312 -1 189 0 0 0 chr11 148200779 148200800 -582672 + (CA)n Simple_repeat Simple_repeat 2 22 0 851 230 0 0 chr11 148201275 148201440 -582032 + FRAM SINE Alu 1 165 -1 497 278 8 0 chr11 148202688 148202821 -580651 + MIR SINE MIR 37 170 -92 2277 119 0 0 chr11 148202823 148203125 -580347 - AluSg SINE Alu -8 302 1 213 132 0 0 chr11 148203246 148203284 -580188 + (TG)n Simple_repeat Simple_repeat 2 39 0 293 219 47 0 chr11 148205902 148205966 -577506 - MLT1J LTR MaLR -41 470 404 520 226 197 16 chr11 148206002 148206235 -577237 - MLT1J LTR MaLR -210 301 1 183 284 11 45 chr11 148208060 148208148 -575324 + MIR SINE MIR 103 187 -75 204 323 0 21 chr11 148209283 148209379 -574093 + MIR SINE MIR 58 151 -111 21 0 0 0 chr11 148209471 148209492 -573980 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr11 148209835 148209858 -573614 + (T)n Simple_repeat Simple_repeat 1 23 0 667 243 14 7 chr11 148210589 148210737 -572735 - MLT1A2 LTR MaLR -50 324 176 222 118 0 0 chr11 148210742 148210776 -572696 + (GA)n Simple_repeat Simple_repeat 2 35 0 885 166 4 113 chr11 148210822 148211051 -572421 - L1MA10 LINE L1 -10 6324 6121 291 177 0 0 chr11 148211122 148211184 -572288 + (CA)n Simple_repeat Simple_repeat 2 63 0 303 179 0 0 chr11 148212704 148212771 -570701 + (TG)n Simple_repeat Simple_repeat 1 67 0 1964 132 14 3 chr11 148213508 148213795 -569677 + AluSx SINE Alu 1 290 -22 209 244 0 0 chr11 148214211 148214256 -569216 + L2 LINE L2 3269 3313 0 224 302 83 0 chr11 148214336 148214432 -569040 - MIR SINE MIR -40 222 119 304 330 41 0 chr11 148214669 148214766 -568706 - MIR SINE MIR -114 148 48 874 187 18 116 chr11 148215196 148215428 -568044 - L1MB8 LINE L1 0 6178 5977 2311 104 0 16 chr11 148215428 148215746 -567726 - AluSq SINE Alu 0 313 1 874 187 18 116 chr11 148215746 148215797 -567675 - L1MB8 LINE L1 -201 5977 5923 1670 192 6 16 chr11 148215868 148216181 -567291 - AluJo SINE Alu -2 310 1 279 300 106 19 chr11 148216435 148216595 -566877 - MER5A DNA MER1_type -5 184 11 2109 109 0 0 chr11 148216843 148217126 -566346 + AluSc SINE Alu 1 283 -26 23 33 0 0 chr11 148217130 148217160 -566312 + AT_rich Low_complexity Low_complexity 1 30 0 509 239 128 9 chr11 148217269 148217454 -566018 + MIR SINE MIR 2 183 -62 381 296 53 13 chr11 148217618 148217770 -565702 - MIR SINE MIR -36 226 69 285 311 25 17 chr11 148220657 148220776 -562696 - MIR SINE MIR -74 188 69 288 91 0 0 chr11 148220844 148220888 -562584 + (TG)n Simple_repeat Simple_repeat 2 45 0 430 216 36 9 chr11 148221425 148221536 -561936 - MER103 DNA DNA -17 149 36 628 256 108 0 chr11 148222941 148223164 -560308 + MIR SINE MIR 6 252 -10 567 276 79 14 chr11 148223217 148223431 -560041 + MIR SINE MIR 25 252 -10 21 0 0 0 chr11 148223762 148223783 -559689 + AT_rich Low_complexity Low_complexity 1 21 0 1370 319 73 12 chr11 148223983 148224487 -558985 + L3 LINE CR1 332 866 -711 621 293 29 11 chr11 148224770 148224944 -558528 + MIR SINE MIR 8 184 -78 195 42 0 0 chr11 148225458 148225482 -557990 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 190 260 135 58 chr11 148225786 148225890 -557582 + L3 LINE CR1 1249 1360 -217 950 191 76 20 chr11 148227573 148227967 -555505 - LTR54 LTR ERV1 -1 509 1 181 389 56 0 chr11 148228521 148228647 -554825 + MIR SINE MIR 114 246 -16 234 313 60 27 chr11 148229527 148229677 -553795 - MIR SINE MIR -44 218 64 315 0 0 0 chr11 148230517 148230552 -552920 + (TG)n Simple_repeat Simple_repeat 2 36 0 431 314 48 27 chr11 148230558 148230746 -552726 + MIR3 SINE MIR 10 201 -7 456 268 96 52 chr11 148231970 148232220 -551252 - MIR SINE MIR -1 261 1 301 303 146 17 chr11 148233179 148233357 -550115 - L3b LINE CR1 -207 1376 1176 424 230 80 9 chr11 148233576 148233689 -549783 + MIR SINE MIR 23 143 -65 189 323 16 0 chr11 148233723 148233785 -549687 + L2 LINE L2 3204 3266 -6 353 70 18 0 chr11 148233973 148234030 -549442 + (CA)n Simple_repeat Simple_repeat 2 59 0 510 292 92 27 chr11 148234878 148235063 -548409 - MIR SINE MIR -37 225 29 291 299 96 28 chr11 148235139 148235316 -548156 + L2 LINE L2 3125 3313 0 1378 185 17 34 chr11 148235748 148236040 -547432 - AluJb SINE Alu -22 290 4 463 341 23 0 chr11 148236232 148236405 -547067 + MIR SINE MIR 54 230 -32 803 241 77 0 chr11 148237637 148237844 -545628 - MER58A DNA MER1_type -1 223 1 3483 64 16 0 chr11 148238114 148238551 -544921 - MLT2A1 LTR ERVL 0 444 1 280 303 0 0 chr11 148238626 148238715 -544757 + CT-rich Low_complexity Low_complexity 1 89 0 1990 99 3 7 chr11 148240026 148240436 -543036 - AluSx SINE Alu 0 409 1 513 333 83 19 chr11 148240853 148241117 -542355 - L2 LINE L2 0 3272 2992 303 280 106 23 chr11 148242538 148242670 -540802 + MIR3 SINE MIR 2 144 -64 267 223 41 132 chr11 148243090 148243211 -540261 - L2 LINE L2 0 3272 3163 1464 305 124 14 chr11 148243857 148244577 -538895 + L2 LINE L2 2164 2964 -350 456 245 141 21 chr11 148244577 148244736 -538736 - MER5A DNA MER1_type 0 189 5 2235 218 8 13 chr11 148244800 148245327 -538145 - L1MB8 LINE L1 -9 6169 5646 23 0 0 0 chr11 148246633 148246656 -536816 + AT_rich Low_complexity Low_complexity 1 23 0 3949 226 33 17 chr11 148246722 148247734 -535738 - L1MB8 LINE L1 -1173 4973 3946 331 223 8 146 chr11 148247980 148248027 -535445 + L2 LINE L2 3161 3213 -59 1292 179 22 60 chr11 148248027 148248345 -535127 - AluJb SINE Alu -6 306 1 331 223 8 146 chr11 148248345 148248427 -535045 + L2 LINE L2 3213 3272 0 2130 105 7 0 chr11 148250188 148250484 -532988 + AluSc SINE Alu 1 298 -11 193 258 0 81 chr11 148250832 148250894 -532578 - MIR3 SINE MIR -28 180 124 354 292 28 56 chr11 148251399 148251543 -531929 - MER5B DNA MER1_type -30 148 9 24 0 0 0 chr11 148252204 148252228 -531244 + AT_rich Low_complexity Low_complexity 1 24 0 2418 71 0 0 chr11 148252228 148252538 -530934 - AluSg SINE Alu 0 310 1 847 254 19 9 chr11 148253087 148253311 -530161 + MIR SINE MIR 34 262 0 254 307 0 97 chr11 148253382 148253496 -529976 - MIR SINE MIR -66 142 40 1094 248 64 7 chr11 148253737 148254184 -529288 - L2 LINE L2 -277 3036 2555 1986 122 31 0 chr11 148254346 148254634 -528838 + AluSg SINE Alu 2 298 -12 272 346 96 7 chr11 148256120 148256256 -527216 + L3b LINE CR1 1422 1569 -14 239 162 0 0 chr11 148256976 148257013 -526459 + L2 LINE L2 3266 3302 -11 306 0 0 0 chr11 148257635 148257669 -525803 + (CA)n Simple_repeat Simple_repeat 2 35 0 1918 130 0 13 chr11 148258778 148259077 -524395 + AluSq SINE Alu 1 295 -18 319 323 85 15 chr11 148259092 148259293 -524179 - MIR SINE MIR -20 242 28 247 313 61 7 chr11 148260683 148260830 -522642 + MIR SINE MIR 73 227 -35 1446 262 133 8 chr11 148262088 148262569 -520903 - MLT1F LTR MaLR -1 541 1 344 284 0 0 chr11 148265712 148265800 -517672 + GA-rich Low_complexity Low_complexity 2 89 0 3386 37 17 0 chr11 148266160 148266562 -516910 + L1PA5 LINE L1 5738 6146 -8 215 304 58 0 chr11 148266621 148266690 -516782 - L2 LINE L2 -51 3221 3149 228 35 0 0 chr11 148267775 148267804 -515668 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 552 274 77 0 chr11 148268040 148268208 -515264 - MIR SINE MIR -17 245 65 820 272 15 0 chr11 148269106 148269301 -514171 + MER58A DNA MER1_type 3 200 -24 274 395 46 7 chr11 148270540 148270692 -512780 - MIR SINE MIR -56 206 49 4455 130 29 11 chr11 148270828 148271552 -511920 - L1PA13 LINE L1 -1 6162 5426 262 300 49 31 chr11 148273008 148273166 -510306 - MIR3 SINE MIR -32 176 21 204 40 0 0 chr11 148273605 148273630 -509842 + (CAT)n Simple_repeat Simple_repeat 1 25 0 285 302 84 44 chr11 148274590 148274807 -508665 + MIR SINE MIR 6 225 -37 391 264 32 58 chr11 148277031 148277082 -506390 + MER5A DNA MER1_type 1 52 -137 2434 169 27 0 chr11 148277082 148277491 -505981 + MSTB LTR MaLR 3 422 -4 391 264 32 58 chr11 148277491 148277594 -505878 + MER5A DNA MER1_type 52 151 -38 606 311 6 0 chr11 148277630 148277807 -505665 - MER5B DNA MER1_type 0 178 1 251 270 135 0 chr11 148280276 148280365 -503107 + MER46C DNA MER2_type 2 102 -236 745 180 48 6 chr11 148280878 148281045 -502427 - L1MC1 LINE L1 -7 6326 6153 2085 101 17 7 chr11 148281243 148281539 -501933 + AluSx SINE Alu 1 299 -13 262 320 22 67 chr11 148283338 148283516 -499956 + MIR SINE MIR 69 238 -24 229 381 85 8 chr11 148283837 148283955 -499517 - L2 LINE L2 0 3272 3146 228 130 0 0 chr11 148284514 148284560 -498912 + (CAGAGA)n Simple_repeat Simple_repeat 1 46 0 1242 270 51 20 chr11 148284626 148285115 -498357 - L1ME3A LINE L1 -21 6149 5646 32 26 0 0 chr11 148285118 148285157 -498315 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr11 148286253 148286274 -497198 + AT_rich Low_complexity Low_complexity 1 21 0 1815 164 7 3 chr11 148286588 148286875 -496597 + AluJo SINE Alu 1 288 -24 191 301 161 21 chr11 148287311 148287454 -496018 + MIR SINE MIR 98 260 -2 663 278 124 28 chr11 148288835 148289276 -494196 - MLT1J LTR MaLR 0 511 4 338 303 197 5 chr11 148290105 148290313 -493159 + MIR SINE MIR 3 250 -12 468 232 195 12 chr11 148290490 148290736 -492736 - HAL1b LINE L1 -355 993 703 714 283 54 52 chr11 148290794 148291274 -492198 - HAL1b LINE L1 -778 570 90 2585 41 3 0 chr11 148291712 148292006 -491466 - AluY SINE Alu -11 300 6 316 361 43 57 chr11 148293154 148293384 -490088 + MIR SINE MIR 20 246 -16 886 215 0 0 chr11 148293482 148293654 -489818 + Tigger3(Golem) DNA MER2_type 2 173 -2856 4447 135 50 51 chr11 148293696 148294597 -488875 + Tigger3(Golem) DNA MER2_type 2121 3020 -9 552 296 11 0 chr11 148294815 148294991 -488481 + MER8 DNA MER2_type 2 179 -60 239 267 17 0 chr11 148294969 148295029 -488443 + MER2 DNA MER2_type 285 345 0 * 333 292 54 15 chr11 148295167 148295297 -488175 + MIR SINE MIR 20 154 -108 21 71 0 0 chr11 148296725 148296767 -486705 + AT_rich Low_complexity Low_complexity 1 42 0 2156 110 10 3 chr11 148296786 148297078 -486394 + AluSx SINE Alu 1 294 -18 444 291 89 39 chr11 148299425 148299628 -483844 + MIR SINE MIR 50 262 0 249 84 42 0 chr11 148299781 148299841 -483631 + L1MA3 LINE L1 6241 6305 0 199 281 16 31 chr11 148300505 148300569 -482903 + MIR SINE MIR 88 150 -112 242 277 98 62 chr11 148300908 148301020 -482452 + L2 LINE L2 3155 3270 -2 358 291 108 39 chr11 148301030 148301233 -482239 - MIR SINE MIR -41 221 5 407 335 64 39 chr11 148302906 148303139 -480333 - MIR SINE MIR -14 248 10 336 320 20 0 chr11 148303297 148303397 -480075 + MIR SINE MIR 21 122 -86 26 30 0 0 chr11 148303911 148303944 -479528 + AT_rich Low_complexity Low_complexity 1 33 0 1759 175 115 0 chr11 148304515 148304863 -478609 + MLT1B LTR MaLR 1 388 -2 293 272 136 0 chr11 148304952 148305077 -478395 + MIR SINE MIR 55 196 -66 225 317 75 43 chr11 148306413 148306599 -476873 + L2 LINE L2 2915 3106 -166 310 301 141 6 chr11 148306867 148307023 -476449 - MER5B DNA MER1_type -1 177 1 349 351 58 6 chr11 148307148 148307322 -476150 - MIR SINE MIR -75 187 5 387 0 0 0 chr11 148307397 148307440 -476032 + (TCTA)n Simple_repeat Simple_repeat 2 44 0 189 0 0 0 chr11 148308330 148308351 -475121 + (GA)n Simple_repeat Simple_repeat 2 22 0 332 316 230 5 chr11 148308419 148308615 -474857 + MIR SINE MIR 11 250 -12 504 93 31 21 chr11 148309463 148309560 -473912 + CT-rich Low_complexity Low_complexity 3 100 0 463 317 99 23 chr11 148314603 148314824 -468648 - MIR SINE MIR -5 257 20 556 320 86 0 chr11 148315353 148315575 -467897 + L3 LINE CR1 1215 1455 -122 216 224 0 0 chr11 148315575 148315642 -467830 + (TG)n Simple_repeat Simple_repeat 1 67 0 321 262 39 0 chr11 148316063 148316166 -467306 - L1MC4 LINE L1 -394 7648 7542 186 312 111 21 chr11 148316333 148316552 -466920 + MIR SINE MIR 17 262 0 345 325 141 0 chr11 148316767 148316930 -466542 - MIR SINE MIR -15 247 62 306 273 0 71 chr11 148318569 148318668 -464804 + MER117 DNA MER1_type 65 156 -41 628 247 26 7 chr11 148318845 148318999 -464473 + MER5A DNA MER1_type 33 189 0 336 249 0 0 chr11 148319497 148319990 -463482 + (TG)n Simple_repeat Simple_repeat 1 493 0 366 240 0 0 chr11 148320001 148320391 -463081 + (TG)n Simple_repeat Simple_repeat 1 390 0 463 226 0 27 chr11 148320423 148320945 -462527 + (TG)n Simple_repeat Simple_repeat 1 508 0 407 226 0 11 chr11 148321009 148321190 -462282 + (TG)n Simple_repeat Simple_repeat 2 180 0 276 264 0 0 chr11 148321205 148321379 -462093 + (TG)n Simple_repeat Simple_repeat 1 174 0 579 220 1 8 chr11 148321411 148323053 -460419 + (TG)n Simple_repeat Simple_repeat 1 1630 0 596 180 0 6 chr11 148323102 148323274 -460198 + (TG)n Simple_repeat Simple_repeat 2 172 0 217 206 143 16 chr11 148323600 148323663 -459809 + MIR SINE MIR 117 187 -75 306 223 67 109 chr11 148325341 148325527 -457945 + MIR SINE MIR 31 214 -48 895 261 131 50 chr11 148326780 148327224 -456248 + L2 LINE L2 2829 3308 -5 1530 188 8 0 chr11 148327532 148327798 -455674 - Tigger2 DNA MER2_type 0 2718 2451 561 320 86 0 chr11 148328462 148328684 -454788 + L3 LINE CR1 1215 1455 -122 216 224 0 0 chr11 148328684 148328751 -454721 + (TG)n Simple_repeat Simple_repeat 1 67 0 341 255 39 0 chr11 148329170 148329272 -454200 - L1MC4 LINE L1 -394 7648 7543 345 319 141 0 chr11 148329870 148330033 -453439 - MIR SINE MIR -15 247 62 325 273 0 71 chr11 148331671 148331770 -451702 + MER117 DNA MER1_type 65 156 -41 577 255 33 7 chr11 148331946 148332099 -451373 + MER5A DNA MER1_type 33 189 0 370 235 0 8 chr11 148332597 148332845 -450627 + (TG)n Simple_repeat Simple_repeat 1 245 0 258 258 0 0 chr11 148332856 148333015 -450457 + (TG)n Simple_repeat Simple_repeat 1 159 0 440 208 0 22 chr11 148333041 148333224 -450248 + (TG)n Simple_repeat Simple_repeat 2 180 0 309 257 0 0 chr11 148333291 148333470 -450002 + (TG)n Simple_repeat Simple_repeat 2 180 0 422 224 0 6 chr11 148333531 148333710 -449762 + (TG)n Simple_repeat Simple_repeat 1 178 0 418 191 0 43 chr11 148333780 148333968 -449504 + (TG)n Simple_repeat Simple_repeat 1 180 0 336 219 0 0 chr11 148334016 148334139 -449333 + (TG)n Simple_repeat Simple_repeat 2 124 0 422 239 0 3 chr11 148334172 148334508 -448964 + (TG)n Simple_repeat Simple_repeat 1 334 0 528 226 7 0 chr11 148334557 148334989 -448483 + (TG)n Simple_repeat Simple_repeat 1 435 0 596 174 0 5 chr11 148335010 148335228 -448244 + (TG)n Simple_repeat Simple_repeat 1 216 0 213 206 143 16 chr11 148335554 148335617 -447855 + MIR SINE MIR 117 187 -75 299 215 67 109 chr11 148337295 148337481 -445991 + MIR SINE MIR 31 214 -48 887 264 131 50 chr11 148338733 148339177 -444295 + L2 LINE L2 2829 3308 -5 2271 172 81 2 chr11 148339484 148339807 -443665 - Tigger2 DNA MER2_type 0 2718 2355 186 43 0 0 chr11 148339807 148339830 -443642 + (GGA)n Simple_repeat Simple_repeat 2 24 0 2271 172 81 2 chr11 148339830 148339913 -443559 - Tigger2 DNA MER2_type -363 2355 2280 408 91 18 0 chr11 148339925 148339980 -443492 - Tigger2 DNA MER2_type -2662 56 1 246 217 0 14 chr11 148345023 148345092 -438380 + (CGGGG)n Simple_repeat Simple_repeat 4 71 0 242 131 49 16 chr11 148345830 148345891 -437581 + GA-rich Low_complexity Low_complexity 1 63 0 206 309 81 27 chr11 148347294 148347443 -436029 + MIR SINE MIR 57 213 -49 196 312 39 0 chr11 148347462 148347539 -435933 + MIR SINE MIR 183 262 0 447 196 188 21 chr11 148349018 148349212 -434260 - MIR SINE MIR -17 245 15 383 274 69 17 chr11 148349862 148350037 -433435 + MIR SINE MIR 78 261 -1 264 100 0 0 chr11 148350067 148350107 -433365 + (CA)n Simple_repeat Simple_repeat 1 40 0 458 251 202 25 chr11 148350724 148350967 -432505 - L1MEd LINE L1 -4921 1198 913 597 307 172 44 chr11 148351104 148351667 -431805 - L1MEd LINE L1 -5367 752 118 557 255 14 14 chr11 148351696 148351837 -431635 - MIR SINE MIR -1 261 121 217 309 45 55 chr11 148351931 148352041 -431431 - MIR SINE MIR -74 134 26 419 281 3 38 chr11 148352247 148352425 -431047 + L1ME2 LINE L1 6000 6333 -1 235 280 220 18 chr11 148352577 148352745 -430727 - L2 LINE L2 -21 3292 3091 2553 87 59 6 chr11 148352833 148353189 -430283 - THE1C LTR MaLR 0 375 1 324 0 0 0 chr11 148353205 148353241 -430231 + (TG)n Simple_repeat Simple_repeat 2 37 0 257 343 56 0 chr11 148353631 148353774 -429698 + L2 LINE L2 2149 2299 -1015 376 224 194 0 chr11 148353826 148353924 -429548 - MIR SINE MIR 0 262 146 343 289 128 49 chr11 148353935 148354139 -429333 + L2 LINE L2 2312 2531 -783 480 263 288 0 chr11 148354184 148354344 -429128 + MIR SINE MIR 31 236 -26 565 271 45 2 chr11 148354454 148354635 -428837 + MIR SINE MIR 45 231 -31 706 248 13 0 chr11 148355131 148355284 -428188 - MER45A DNA AcHobo -22 156 2 429 290 61 61 chr11 148355580 148355811 -427661 - MIR SINE MIR -2 260 30 681 342 73 48 chr11 148355850 148356392 -427080 + L1ME4a LINE L1 4473 5039 -1107 1170 190 0 16 chr11 148356392 148356645 -426827 + L1MA6 LINE L1 6045 6293 -7 681 342 73 48 chr11 148356645 148356816 -426656 + L1ME4a LINE L1 5039 5204 -942 1158 228 22 8 chr11 148356822 148357090 -426382 + L1M3e LINE L1 5 276 -6754 3290 251 78 18 chr11 148357100 148360113 -423359 + L1M3e LINE L1 1081 3950 -3156 4301 150 27 33 chr11 148360127 148360974 -422498 - L1MA7 LINE L1 -1 6290 5449 2142 173 47 22 chr11 148360979 148361430 -422042 + L1M3e LINE L1 4879 5340 -1766 456 292 148 50 chr11 148361467 148361963 -421509 + L1ME4a LINE L1 5255 5808 -313 2941 265 77 41 chr11 148361964 148363372 -420100 - L2 LINE L2 -1 3312 1855 311 274 141 7 chr11 148363416 148363551 -419921 + L2 LINE L2 1542 1694 -1620 236 216 0 0 chr11 148363551 148363602 -419870 + L1ME4a LINE L1 5823 5873 -248 777 228 12 12 chr11 148363872 148364039 -419433 + MER5A DNA MER1_type 2 168 -21 7878 21 0 1 chr11 148364295 148365470 -418002 + L1PA3 LINE L1 5031 6204 0 218 250 0 34 chr11 148365663 148365751 -417721 + (TA)n Simple_repeat Simple_repeat 2 86 0 239 303 25 41 chr11 148365752 148365874 -417598 + L1ME4a LINE L1 5983 6102 -19 1324 144 152 4 chr11 148365889 148366146 -417326 - AluJb SINE Alu -17 295 1 241 181 0 28 chr11 148366162 148366234 -417238 + GA-rich Low_complexity Low_complexity 3 72 0 3863 141 93 18 chr11 148366967 148367458 -416014 - MER50 LTR ERV1 -15 719 162 1860 147 0 7 chr11 148367458 148367766 -415706 - AluSx SINE Alu 0 306 1 3863 141 93 18 chr11 148367766 148367942 -415530 - MER50 LTR ERV1 -572 162 1 233 260 0 0 chr11 148368427 148368477 -414995 - MLT1J LTR MaLR -53 458 409 3344 194 37 48 chr11 148368743 148369256 -414216 - L1ME1 LINE L1 -5 6230 5729 1893 195 14 30 chr11 148369256 148369626 -413846 - MLT1A1 LTR MaLR 0 365 2 3344 194 37 48 chr11 148369626 148369959 -413513 - L1ME1 LINE L1 -506 5729 5394 4948 224 39 19 chr11 148369971 148370113 -413359 - L1ME1 LINE L1 -1254 4961 4823 1561 194 14 14 chr11 148370113 148370416 -413056 - AluJo SINE Alu 0 303 1 4948 224 39 19 chr11 148370416 148371662 -411810 - L1ME1 LINE L1 -1392 4823 3544 1799 261 47 22 chr11 148371667 148372215 -411257 - L1ME1 LINE L1 -5715 681 120 1225 200 9 0 chr11 148372251 148372481 -410991 - AluJb SINE Alu -78 234 3 359 161 16 0 chr11 148372523 148372585 -410887 - L1ME1 LINE L1 -6298 98 36 320 359 56 0 chr11 148373430 148373572 -409900 - MIR SINE MIR -17 245 96 184 316 13 86 chr11 148373777 148373929 -409543 - MIR3 SINE MIR -65 143 3 762 321 48 4 chr11 148373994 148374243 -409229 + MIR SINE MIR 2 261 -1 584 318 26 13 chr11 148374562 148374790 -408682 + MIR SINE MIR 23 253 -9 569 273 35 40 chr11 148374790 148374988 -408484 + MIR SINE MIR 3 199 -63 2149 110 10 7 chr11 148374989 148375299 -408173 + AluSp SINE Alu 1 311 -2 199 339 0 0 chr11 148375355 148375420 -408052 + MIR SINE MIR 185 249 -13 221 375 29 0 chr11 148376106 148376210 -407262 - MIR SINE MIR -61 147 41 332 285 26 45 chr11 148376260 148376412 -407060 - MIR SINE MIR -67 141 6 295 143 14 14 chr11 148376786 148376856 -406616 + CT-rich Low_complexity Low_complexity 2 71 0 285 185 0 0 chr11 148377058 148377123 -406349 + (TG)n Simple_repeat Simple_repeat 1 65 0 181 160 20 20 chr11 148377126 148377176 -406296 + GA-rich Low_complexity Low_complexity 1 50 0 709 295 58 38 chr11 148378487 148379096 -404376 - L2 LINE L2 -7 3306 2684 633 230 51 45 chr11 148379103 148379281 -404191 - MER5A DNA MER1_type -3 186 8 1426 191 90 0 chr11 148379991 148380269 -403203 - AluJo SINE Alu -9 303 1 221 379 21 0 chr11 148380832 148380972 -402500 - L2 LINE L2 -541 2773 2631 2439 185 88 9 chr11 148381394 148381859 -401613 - MER21B LTR ERV1 -94 769 268 981 55 86 0 chr11 148381861 148381989 -401483 - MER85 DNA T2_type 0 139 1 * 1583 209 14 7 chr11 148381989 148382258 -401214 - MER21B LTR ERV1 -592 271 1 360 318 131 33 chr11 148382318 148382532 -400940 + MIR SINE MIR 20 254 -8 4184 161 36 31 chr11 148382709 148383514 -399958 - L1MB7 LINE L1 -19 6165 5357 1573 214 3 19 chr11 148383843 148384190 -399282 + AluJo SINE Alu 1 342 0 330 319 76 32 chr11 148385400 148385585 -397887 + MIR SINE MIR 4 196 -66 27 0 0 0 chr11 148386373 148386400 -397072 + AT_rich Low_complexity Low_complexity 1 27 0 351 303 13 0 chr11 148386428 148386580 -396892 - L1ME LINE L1 -313 5808 5655 444 243 51 64 chr11 148386828 148386882 -396590 - L1ME4a LINE L1 -243 5878 5825 669 58 0 0 chr11 148386882 148386968 -396504 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 1938 134 0 34 chr11 148386970 148387268 -396204 - AluSx SINE Alu -24 288 1 444 243 51 64 chr11 148387268 148387445 -396027 - L1ME4a LINE L1 -297 5824 5647 223 250 0 0 chr11 148387819 148387863 -395609 + polypyrimidine Low_complexity Low_complexity 4 47 0 210 287 138 0 chr11 148387877 148387964 -395508 - L2 LINE L2 -3 3269 3171 360 0 0 0 chr11 148389265 148389305 -394167 + (TG)n Simple_repeat Simple_repeat 2 41 0 1610 132 4 0 chr11 148389334 148389562 -393910 - AluSx SINE Alu -83 229 1 327 329 99 12 chr11 148392700 148392861 -390611 + MIR SINE MIR 20 194 -68 264 277 92 28 chr11 148393424 148393565 -389907 + MIR SINE MIR 32 181 -81 371 329 56 35 chr11 148393576 148393807 -389665 + MIR SINE MIR 14 249 -13 223 169 26 52 chr11 148394032 148394109 -389363 + (TCTCTG)n Simple_repeat Simple_repeat 2 76 0 2051 113 4 0 chr11 148394309 148394584 -388888 + AluSg SINE Alu 2 277 -33 414 0 0 0 chr11 148394585 148394631 -388841 + (GA)n Simple_repeat Simple_repeat 1 46 0 312 29 0 0 chr11 148395192 148395227 -388245 + tRNA-Tyr-TAC tRNA tRNA 1 35 -41 3065 107 5 5 chr11 148395227 148395668 -387804 + L1PA13 LINE L1 5723 6163 0 22 35 0 0 chr11 148396120 148396149 -387323 + AT_rich Low_complexity Low_complexity 1 29 0 255 317 73 0 chr11 148397516 148397639 -385833 + MIR SINE MIR 81 212 -50 258 307 62 43 chr11 148398992 148399160 -384312 + MIR SINE MIR 27 192 -61 212 299 80 22 chr11 148401186 148401323 -382149 + L2 LINE L2 2897 3041 -231 456 325 27 0 chr11 148402635 148402839 -380633 + MIR SINE MIR 41 250 -12 2038 138 0 3 chr11 148403008 148403304 -380168 - AluSq SINE Alu 0 313 19 326 339 107 26 chr11 148403902 148404362 -379110 + L2 LINE L2 2394 2890 -424 1887 129 30 0 chr11 148404576 148404695 -378777 + AluSc SINE Alu 1 115 -194 230 0 33 0 chr11 148404695 148404725 -378747 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2421 72 0 13 chr11 148404727 148405033 -378439 + AluY SINE Alu 1 302 -9 1887 129 30 0 chr11 148405033 148405181 -378291 + AluSc SINE Alu 115 279 -30 260 214 29 68 chr11 148405206 148405309 -378163 + L2 LINE L2 3131 3229 -84 793 228 12 6 chr11 148405452 148405623 -377849 + L1ME2 LINE L1 5411 5582 -582 7036 34 2 30 chr11 148405626 148406106 -377366 + L1PA4 LINE L1 5308 5755 -400 7785 24 0 1 chr11 148406106 148407324 -376148 + L1PA3 LINE L1 4935 6152 -3 7036 34 2 30 chr11 148407324 148407715 -375757 + L1PA4 LINE L1 5755 6155 0 2160 223 25 54 chr11 148407722 148407763 -375709 + L1ME2 LINE L1 5570 5611 -723 2246 122 0 0 chr11 148407763 148408059 -375413 + AluSx SINE Alu 1 296 -16 2160 223 25 54 chr11 148408059 148408636 -374836 + L1ME2 LINE L1 5611 6332 -2 887 123 47 18 chr11 148408881 148409051 -374421 - MER53 DNA DNA -12 177 3 202 343 0 14 chr11 148409202 148409275 -374197 + MIR SINE MIR 45 116 -92 726 152 18 0 chr11 148409725 148409837 -373635 + AluJo/FLAM SINE Alu 2 115 -197 546 93 0 0 chr11 148409837 148409912 -373560 + AluSg/x SINE Alu 176 250 -62 1049 193 9 19 chr11 148409912 148410124 -373348 + AluJb SINE Alu 85 294 -18 495 289 116 17 chr11 148410554 148410786 -372686 + LTR33A LTR ERVL 221 475 -48 2104 148 3 0 chr11 148411954 148412312 -371160 - AluSx SINE Alu 0 359 1 221 192 0 39 chr11 148412894 148412946 -370526 + CT-rich Low_complexity Low_complexity 2 51 0 21 36 0 0 chr11 148413089 148413117 -370355 + AT_rich Low_complexity Low_complexity 1 28 0 358 295 94 7 chr11 148414618 148414767 -368705 - MIR SINE MIR -54 208 47 1214 191 2 135 chr11 148414768 148414942 -368530 + MLT1A2 LTR MaLR 2 88 -286 2016 101 3 17 chr11 148414942 148415287 -368185 + AluSp SINE Alu 1 341 0 1214 191 2 135 chr11 148415287 148415541 -367931 + MLT1A2 LTR MaLR 88 374 0 234 0 0 0 chr11 148417129 148417155 -366317 + (T)n Simple_repeat Simple_repeat 1 26 0 263 228 0 25 chr11 148417481 148417560 -365912 + (TAA)n Simple_repeat Simple_repeat 2 78 0 519 263 29 63 chr11 148417918 148418093 -365379 + MIR SINE MIR 21 189 -73 224 344 131 0 chr11 148418300 148418460 -365012 - MIR SINE MIR -19 243 63 376 312 100 40 chr11 148418565 148419188 -364284 + L2 LINE L2 2637 3301 -12 2175 132 112 2 chr11 148419190 148419584 -363888 - LTR23 LTR ERV1 0 437 1 211 222 121 20 chr11 148420591 148420690 -362782 + MIR SINE MIR 94 202 -60 795 182 0 0 chr11 148420694 148420826 -362646 + FLAM_C SINE Alu 1 132 -1 1083 217 78 30 chr11 148420837 148421172 -362300 + MLT1A2 LTR MaLR 1 352 -38 506 246 91 63 chr11 148421182 148421403 -362069 - LTR31 LTR ERV1 -14 589 364 27 29 0 0 chr11 148421439 148421473 -361999 + AT_rich Low_complexity Low_complexity 1 34 0 229 315 47 39 chr11 148421483 148421540 -361932 - LTR31 LTR ERV1 -323 296 241 2385 81 17 0 chr11 148421540 148421836 -361636 - AluSp SINE Alu -12 301 1 229 315 47 39 chr11 148421836 148421905 -361567 - LTR31 LTR ERV1 -378 241 169 251 309 49 24 chr11 148425468 148425591 -357881 - L2 LINE L2 -7 3306 3181 1595 243 189 32 chr11 148425659 148426224 -357248 + MLT1E1 LTR MaLR 1 654 0 1396 205 37 69 chr11 148426445 148426820 -356652 - MLT1A1 LTR MaLR -2 363 1 1292 246 63 104 chr11 148429396 148430014 -353458 + MLT1E LTR MaLR 1 593 0 192 360 0 0 chr11 148430072 148430147 -353325 - L2 LINE L2 0 3313 3239 265 287 40 10 chr11 148430534 148430635 -352837 + MER5A DNA MER1_type 9 112 -77 249 257 57 9 chr11 148431047 148431152 -352320 - L2 LINE L2 -952 2362 2253 304 289 69 69 chr11 148431981 148432140 -351332 + L1MCa LINE L1 1289 1447 -4979 482 278 48 5 chr11 148432250 148432437 -351035 + L1ME1 LINE L1 35 229 -6167 2649 287 53 15 chr11 148432721 148433877 -349595 + L1ME1 LINE L1 3260 4485 -1730 2006 270 56 33 chr11 148434002 148435310 -348162 + L1ME1 LINE L1 4889 6230 -5 29 0 0 0 chr11 148435418 148435447 -348025 + AT_rich Low_complexity Low_complexity 1 29 0 198 71 0 0 chr11 148435553 148435581 -347891 + (TG)n Simple_repeat Simple_repeat 1 28 0 195 186 0 0 chr11 148436953 148436996 -346476 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 649 296 20 10 chr11 148437077 148437280 -346192 + L1ME3A LINE L1 5942 6146 -24 2665 29 3 0 chr11 148438727 148439033 -344439 - AluY SINE Alu -4 307 1 1510 4 8 4 chr11 148439039 148439278 -344194 + (TTC)n Simple_repeat Simple_repeat 1 240 0 183 42 0 0 chr11 148439338 148439362 -344110 + (TTA)n Simple_repeat Simple_repeat 1 24 0 295 247 148 37 chr11 148439482 148439644 -343828 + HAL1 LINE L1 1455 1634 -873 33 25 0 0 chr11 148440234 148440274 -343198 + AT_rich Low_complexity Low_complexity 1 40 0 384 261 58 58 chr11 148440637 148440878 -342594 + L1 LINE L1 3226 3466 -2680 2027 97 7 21 chr11 148441026 148441353 -342119 + AluSc SINE Alu 1 323 0 207 0 0 0 chr11 148443375 148443398 -340074 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 584 259 93 28 chr11 148443760 148443976 -339496 - MER96B DNA MER1_type? -186 231 2 319 273 152 0 chr11 148443976 148444108 -339364 + MIR SINE MIR 111 262 0 797 227 194 45 chr11 148444915 148445426 -338046 - LTR50 LTR ERVL -188 607 21 300 267 0 0 chr11 148447255 148447315 -336157 - L2 LINE L2 -4 3268 3209 247 364 0 11 chr11 148447646 148447734 -335738 + L2 LINE L2 3139 3225 -47 275 411 34 13 chr11 148448591 148448827 -334645 + MIR SINE MIR 14 254 -8 21 0 0 0 chr11 148450778 148450799 -332673 + AT_rich Low_complexity Low_complexity 1 21 0 2062 114 16 29 chr11 148452052 148452359 -331113 - AluSx SINE Alu -9 303 1 238 375 56 39 chr11 148452359 148452767 -330705 + L2 LINE L2 1896 2310 -1004 1070 204 46 117 chr11 148453461 148453854 -329618 + MLT1A1 LTR MaLR 1 365 0 295 308 84 0 chr11 148455155 148455262 -328210 + L2 LINE L2 3156 3271 -1 528 246 29 7 chr11 148455314 148455452 -328020 - MIR3 SINE MIR -45 163 23 300 313 109 56 chr11 148455523 148455881 -327591 - L2 LINE L2 -8 3305 2929 308 269 211 18 chr11 148456223 148456394 -327078 + MIR SINE MIR 49 252 -10 214 267 100 0 chr11 148456455 148456515 -326957 + L2 LINE L2 3236 3301 -12 372 152 0 0 chr11 148460932 148460998 -322474 + CT-rich Low_complexity Low_complexity 2 67 0 185 186 23 47 chr11 148461267 148461310 -322162 - L2 LINE L2 -33 3280 3239 215 323 72 56 chr11 148461419 148461670 -321802 - L2 LINE L2 -192 3080 2826 320 299 137 8 chr11 148462060 148462177 -321295 - L2 LINE L2 -9 3263 3132 561 292 116 13 chr11 148462522 148462755 -320717 + MIR SINE MIR 2 258 -4 23 0 0 0 chr11 148462760 148462783 -320689 + AT_rich Low_complexity Low_complexity 1 23 0 297 329 111 39 chr11 148463555 148463968 -319504 + L2 LINE L2 2429 2871 -443 197 298 107 83 chr11 148465279 148465447 -318025 - MIR3 SINE MIR -11 197 26 216 67 0 0 chr11 148467384 148467414 -316058 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 321 261 61 89 chr11 148467707 148467887 -315585 - MIR3 SINE MIR -19 189 15 536 252 24 36 chr11 148467986 148468162 -315310 - MER5B DNA MER1_type -6 172 3 249 108 0 0 chr11 148468195 148468232 -315240 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 357 294 82 49 chr11 148470207 148470391 -313081 + MIR SINE MIR 40 229 -33 338 173 13 0 chr11 148471685 148471760 -311712 + CT-rich Low_complexity Low_complexity 2 77 0 180 0 0 0 chr11 148472486 148472506 -310966 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 267 343 38 0 chr11 148473077 148473182 -310290 - L2 LINE L2 -10 3262 3154 222 118 0 0 chr11 148473330 148473364 -310108 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 267 312 71 52 chr11 148473528 148473682 -309790 - L2 LINE L2 -261 3011 2855 2611 161 16 18 chr11 148473691 148474133 -309339 - MLT1C LTR MaLR 0 467 27 884 311 141 36 chr11 148474268 148475043 -308429 - L2 LINE L2 -573 2741 1886 211 347 138 4 chr11 148475053 148475278 -308194 - L2 LINE L2 -2702 612 358 213 240 20 0 chr11 148475795 148475845 -307627 - L2 LINE L2 -1 3271 3221 616 274 54 25 chr11 148476756 148476997 -306475 + MIR SINE MIR 15 262 0 427 243 14 14 chr11 148477008 148477292 -306180 + (CACCAT)n Simple_repeat Simple_repeat 1 284 0 264 258 0 0 chr11 148477306 148477403 -306069 + (CCA)n Simple_repeat Simple_repeat 3 99 0 387 149 0 0 chr11 148477692 148477766 -305706 + (TC)n Simple_repeat Simple_repeat 1 74 0 5956 170 20 7 chr11 148477942 148479945 -303527 - L1PA16 LINE L1 -9 6157 4127 222 151 27 55 chr11 148480682 148480755 -302717 + (TA)n Simple_repeat Simple_repeat 2 72 0 337 363 14 7 chr11 148481369 148481515 -301957 + MIR SINE MIR 46 192 -70 180 176 0 0 chr11 148481521 148481555 -301917 + (TATG)n Simple_repeat Simple_repeat 1 34 0 740 267 10 10 chr11 148482064 148482259 -301213 - MIR SINE MIR -3 259 65 247 316 79 0 chr11 148483144 148483258 -300214 - L2 LINE L2 -1 3312 3190 269 268 0 0 chr11 148483262 148483333 -300139 + (CAT)n Simple_repeat Simple_repeat 2 72 0 261 83 0 0 chr11 148483361 148483397 -300075 + (TA)n Simple_repeat Simple_repeat 1 36 0 603 291 11 6 chr11 148483397 148483579 -299893 - MIR SINE MIR -78 184 2 423 296 8 24 chr11 148483715 148483840 -299632 - L2 LINE L2 0 3313 3191 2245 278 84 8 chr11 148484100 148484957 -298515 + L1ME3A LINE L1 5240 6161 -9 21 0 0 0 chr11 148486862 148486883 -296589 + AT_rich Low_complexity Low_complexity 1 21 0 359 283 136 23 chr11 148487176 148487353 -296119 + MIR SINE MIR 49 245 -17 2740 295 126 39 chr11 148487540 148487709 -295763 - L2 LINE L2 0 3313 3160 2405 80 0 3 chr11 148487709 148488008 -295464 - AluSx SINE Alu -14 298 1 2740 295 126 39 chr11 148488008 148489784 -293688 - L2 LINE L2 -153 3160 1210 215 336 142 0 chr11 148489812 148489925 -293547 - L2 LINE L2 -8 3264 3136 400 313 70 93 chr11 148490091 148490198 -293274 - L2 LINE L2 -3 3269 3161 655 196 203 0 chr11 148490198 148490346 -293126 + MER5B DNA MER1_type 1 178 0 400 313 70 93 chr11 148490346 148490679 -292793 - L2 LINE L2 -111 3161 2839 267 296 74 59 chr11 148490741 148490944 -292528 - MER110 LTR ERV1 -6 485 280 2008 138 3 7 chr11 148491486 148491801 -291671 + AluSx SINE Alu 12 312 0 300 266 219 26 chr11 148492220 148492453 -291019 - L1ME LINE L1 -363 5801 5524 * 1340 297 87 39 chr11 148492450 148493972 -289500 - L1P5 LINE L1 -679 5475 3878 331 242 71 0 chr11 148494167 148494266 -289206 + MER5A DNA MER1_type 4 109 -80 21 0 0 0 chr11 148494496 148494517 -288955 + AT_rich Low_complexity Low_complexity 1 21 0 265 329 62 25 chr11 148494530 148494691 -288781 - L1 LINE L1 -2372 3774 3608 614 319 65 29 chr11 148494957 148495339 -288133 - L1 LINE L1 -2848 3298 2903 43 64 0 0 chr11 148496008 148496086 -287386 + AT_rich Low_complexity Low_complexity 1 78 0 207 111 28 0 chr11 148496467 148496503 -286969 + A-rich Low_complexity Low_complexity 4 40 0 230 91 30 0 chr11 148496696 148496729 -286743 - MLT1F LTR MaLR -508 34 1 255 321 12 0 chr11 148497486 148497567 -285905 - MIR SINE MIR -106 102 21 2236 180 70 2 chr11 148497988 148498389 -285083 - MSTA LTR MaLR 0 428 1 1773 31 0 0 chr11 148498517 148498744 -284728 + L1PA4 LINE L1 5942 6168 0 181 323 32 48 chr11 148500004 148500128 -283344 - MIR3 SINE MIR 0 208 87 22 0 0 0 chr11 148500144 148500166 -283306 + AT_rich Low_complexity Low_complexity 1 22 0 369 0 0 0 chr11 148500279 148500320 -283152 + (TG)n Simple_repeat Simple_repeat 1 41 0 1046 161 4 0 chr11 148501493 148501764 -281708 + (TCCA)n Simple_repeat Simple_repeat 1 272 0 210 118 0 0 chr11 148501778 148501812 -281660 + (TCCA)n Simple_repeat Simple_repeat 1 34 0 253 316 13 0 chr11 148501840 148501916 -281556 - L2 LINE L2 -6 3266 3190 4870 125 4 3 chr11 148501977 148502666 -280806 - L1PA11 LINE L1 -1 6173 5484 511 320 117 9 chr11 148503183 148503478 -279994 - L2 LINE L2 -258 3055 2734 399 286 25 0 chr11 148503481 148503600 -279872 + MER94 DNA DNA 2 123 -11 239 347 24 35 chr11 148504257 148504427 -279045 + L2 LINE L2 1698 1865 -1449 284 321 64 9 chr11 148504570 148504679 -278793 + L2 LINE L2 3142 3256 -16 234 267 187 0 chr11 148504704 148504779 -278693 + L2 LINE L2 3224 3312 -1 305 303 115 8 chr11 148505262 148505384 -278088 - L2 LINE L2 0 3313 3179 375 320 20 48 chr11 148505565 148505712 -277760 - MIR3 SINE MIR -46 162 20 300 254 0 0 chr11 148505766 148505837 -277635 - MER103 DNA DNA -76 90 20 234 304 58 61 chr11 148506423 148506785 -276687 + L2 LINE L2 2520 2880 -434 204 277 0 0 chr11 148507038 148507085 -276387 + CT-rich Low_complexity Low_complexity 2 48 0 251 317 125 0 chr11 148507136 148507256 -276216 + L2 LINE L2 3137 3271 -1 324 188 0 0 chr11 148507827 148507896 -275576 + (TCCA)n Simple_repeat Simple_repeat 2 70 0 524 321 23 28 chr11 148508310 148508528 -274944 + MIR SINE MIR 32 248 -14 1872 261 21 21 chr11 148508955 148509483 -273989 - MER68 LTR ERV1 -7 555 28 212 194 0 0 chr11 148510486 148510522 -272950 + A-rich Low_complexity Low_complexity 1 36 0 238 350 37 53 chr11 148510940 148511186 -272286 + L3 LINE CR1 1264 1505 -72 214 289 36 12 chr11 148511658 148511741 -271731 - MIR3 SINE MIR -5 203 119 222 261 0 0 chr11 148512805 148512851 -270621 + polypurine Low_complexity Low_complexity 4 49 0 539 279 78 50 chr11 148513385 148513643 -269829 - L3 LINE CR1 -1 1576 1312 443 304 34 20 chr11 148513878 148514026 -269446 - MIR SINE MIR -87 175 26 210 149 27 14 chr11 148514400 148514474 -268998 + (CA)n Simple_repeat Simple_repeat 1 75 0 288 162 14 49 chr11 148514497 148514639 -268833 + (CA)n Simple_repeat Simple_repeat 1 137 0 322 171 17 45 chr11 148514673 148514849 -268623 + (CA)n Simple_repeat Simple_repeat 1 171 0 353 187 21 41 chr11 148514869 148515268 -268204 + (CA)n Simple_repeat Simple_repeat 1 390 0 222 206 0 0 chr11 148516407 148516480 -266992 + (TG)n Simple_repeat Simple_repeat 2 74 0 509 230 6 0 chr11 148516505 148516683 -266789 + (TG)n Simple_repeat Simple_repeat 2 180 0 209 222 0 56 chr11 148516684 148516756 -266716 + (TATG)n Simple_repeat Simple_repeat 3 70 0 180 216 0 0 chr11 148516771 148516822 -266650 + (TG)n Simple_repeat Simple_repeat 1 51 0 210 247 82 14 chr11 148517189 148517262 -266210 - MIR3 SINE MIR -6 202 125 180 347 94 26 chr11 148517405 148517745 -265727 + L2 LINE L2 2595 2957 -357 385 286 187 15 chr11 148518969 148519172 -264300 - MIR SINE MIR -6 256 19 372 352 62 22 chr11 148519256 148519483 -263989 + MIR SINE MIR 20 255 -7 1823 67 0 0 chr11 148521883 148522107 -261365 - L1PA8 LINE L1 -483 5671 5448 4129 48 2 0 chr11 148522107 148522579 -260893 + L1PA8 LINE L1 5679 6154 -18 374 215 0 32 chr11 148522595 148522688 -260784 - L1MC4 LINE L1 -1339 6703 6614 305 240 0 62 chr11 148522620 148522716 -260756 + L1MC4 LINE L1 6614 6703 -1339 * 309 182 45 0 chr11 148522701 148522767 -260705 - L1MCa LINE L1 -4362 2064 1996 362 24 0 0 chr11 148522810 148522852 -260620 + L1P2 LINE L1 5459 5500 -655 * 1301 60 6 0 chr11 148522848 148523014 -260458 - L1PA8 LINE L1 -152 6020 5854 574 28 73 0 chr11 148523015 148523124 -260348 + (TA)n Simple_repeat Simple_repeat 2 118 0 303 318 45 17 chr11 148524063 148524208 -259264 + MIR SINE MIR 8 151 -63 198 281 53 70 chr11 148524377 148524491 -258981 + L2 LINE L2 3157 3268 -4 2051 141 0 0 chr11 148525916 148526214 -257258 - AluSx SINE Alu -14 298 1 2162 105 16 13 chr11 148527343 148527649 -255823 + AluSx SINE Alu 1 307 -5 423 0 0 0 chr11 148527649 148527696 -255776 + (TA)n Simple_repeat Simple_repeat 2 48 0 774 316 72 18 chr11 148527939 148528442 -255030 - L1MC4 LINE L1 -184 7858 7329 21 82 0 0 chr11 148528691 148528740 -254732 + AT_rich Low_complexity Low_complexity 1 49 0 209 351 27 27 chr11 148529400 148529588 -253884 + L3 LINE CR1 1208 1395 -182 182 310 179 14 chr11 148530378 148530523 -252949 + MIR SINE MIR 13 181 -81 288 0 0 0 chr11 148530532 148530564 -252908 + (CA)n Simple_repeat Simple_repeat 2 33 0 1421 227 64 49 chr11 148531172 148531216 -252256 - MLT2D LTR ERVL -3 411 369 222 118 0 0 chr11 148531216 148531250 -252222 + (TG)n Simple_repeat Simple_repeat 2 35 0 1421 227 64 49 chr11 148531250 148531610 -251862 - MLT2D LTR ERVL -45 369 1 419 307 22 36 chr11 148532585 148532722 -250750 - MIR3 SINE MIR -61 147 13 678 281 58 65 chr11 148533033 148533181 -250291 - MIR SINE MIR 0 262 115 2339 96 3 0 chr11 148533181 148533493 -249979 + AluSp SINE Alu 1 313 0 678 281 58 65 chr11 148533493 148533604 -249868 - MIR SINE MIR -147 115 5 350 268 189 8 chr11 148533892 148534019 -249453 - MIR SINE MIR -1 261 112 342 229 186 17 chr11 148534233 148534351 -249121 - L2 LINE L2 -1 3312 3175 356 274 147 0 chr11 148535930 148536032 -247440 - MIR SINE MIR -12 250 134 1636 131 4 8 chr11 148536094 148536362 -247110 + L1MA9 LINE L1 6046 6312 0 228 390 134 12 chr11 148536719 148536891 -246581 + L2 LINE L2 3067 3259 -13 531 293 37 18 chr11 148536915 148537079 -246393 - MIR SINE MIR -94 168 2 1785 140 0 0 chr11 148537108 148537373 -246099 + AluSx SINE Alu 36 300 -12 23 0 0 0 chr11 148537815 148537838 -245634 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr11 148537959 148537983 -245489 + AT_rich Low_complexity Low_complexity 1 24 0 516 45 0 0 chr11 148539182 148539249 -244223 + (TC)n Simple_repeat Simple_repeat 1 67 0 299 296 15 82 chr11 148540018 148540153 -243319 + MIR3 SINE MIR 58 183 -25 203 363 32 16 chr11 148540463 148540587 -242885 - L2 LINE L2 -1239 2075 1950 376 172 23 0 chr11 148541159 148541246 -242226 + CT-rich Low_complexity Low_complexity 3 91 0 187 228 165 38 chr11 148541258 148541337 -242135 + MIR SINE MIR 119 207 -55 355 308 54 23 chr11 148544506 148544636 -238836 - L2 LINE L2 -9 3304 3171 255 181 28 28 chr11 148544696 148544768 -238704 + (TA)n Simple_repeat Simple_repeat 2 73 0 217 336 37 0 chr11 148544831 148544938 -238534 - L2 LINE L2 -225 3047 2937 200 390 16 16 chr11 148545083 148545206 -238266 - L2 LINE L2 -520 2794 2672 1627 229 54 42 chr11 148545254 148545732 -237740 - MER20B DNA MER1_type -44 739 220 2414 62 0 0 chr11 148545732 148546040 -237432 - AluY SINE Alu -3 308 1 1627 229 54 42 chr11 148546040 148546263 -237209 - MER20B DNA MER1_type -563 220 1 204 313 61 21 chr11 148546488 148546591 -236881 - MIR SINE MIR -63 145 49 313 288 12 0 chr11 148549010 148549090 -234382 - L2 LINE L2 -8 3305 3225 411 325 73 52 chr11 148549232 148549727 -233745 - L2 LINE L2 -339 2975 2471 625 304 57 9 chr11 148550111 148550338 -233134 - MIR SINE MIR -3 259 22 347 275 131 12 chr11 148552717 148552877 -230595 - MIR3 SINE MIR 0 208 30 295 352 38 9 chr11 148553004 148553109 -230363 - MIR SINE MIR -67 141 34 465 305 130 0 chr11 148554151 148554328 -229144 - MIR SINE MIR -35 227 28 302 287 112 58 chr11 148554563 148554786 -228686 + L2 LINE L2 2983 3217 -96 214 330 128 0 chr11 148555110 148555219 -228253 + L2 LINE L2 3148 3270 -2 492 302 44 29 chr11 148555364 148555569 -227903 + MIR3 SINE MIR 1 208 0 31 26 0 0 chr11 148559506 148559544 -223928 + GC_rich Low_complexity Low_complexity 1 38 0 206 195 13 39 chr11 148559783 148559860 -223612 + (CCCCG)n Simple_repeat Simple_repeat 3 77 0 236 271 0 0 chr11 148563324 148563383 -220089 + CT-rich Low_complexity Low_complexity 3 61 0 678 251 4 88 chr11 148563846 148564073 -219399 - MIR SINE MIR -2 260 53 298 272 152 19 chr11 148564125 148564280 -219192 - MIR SINE MIR -42 220 36 2169 117 42 28 chr11 148564650 148565009 -218463 - THE1B LTR MaLR 0 364 1 659 315 138 33 chr11 148565846 148566272 -217200 + L2 LINE L2 2841 3311 -2 544 266 27 61 chr11 148567455 148567685 -215787 - MIR SINE MIR -24 238 15 193 273 18 0 chr11 148568702 148568757 -214715 + MIR SINE MIR 153 208 -54 233 232 14 0 chr11 148568785 148568854 -214618 + (TA)n Simple_repeat Simple_repeat 1 70 0 1818 200 38 60 chr11 148570168 148570637 -212835 + MLT1C LTR MaLR 3 461 -6 23 33 0 0 chr11 148570648 148570678 -212794 + AT_rich Low_complexity Low_complexity 1 30 0 739 325 74 66 chr11 148570873 148571400 -212072 + L2 LINE L2 87 617 -2697 981 314 84 59 chr11 148571535 148572401 -211071 + L2 LINE L2 2420 3312 -1 505 231 168 59 chr11 148572862 148573065 -210407 + MIR SINE MIR 5 229 -33 206 301 71 44 chr11 148573314 148573427 -210045 + MIR SINE MIR 30 145 -63 969 250 66 52 chr11 148573455 148573895 -209577 + MLT1J1 LTR MaLR 1 446 0 1785 156 6 16 chr11 148574430 148574745 -208727 - AluJb SINE Alu 0 312 1 296 211 119 46 chr11 148574926 148575035 -208437 + L2 LINE L2 3197 3313 0 199 273 0 0 chr11 148575064 148575108 -208364 - L2 LINE L2 -22 3250 3207 300 343 131 0 chr11 148575211 148575348 -208124 - MER91A DNA MER1_type -36 160 6 300 196 15 150 chr11 148577035 148577168 -206304 + MIR SINE MIR 72 186 -76 328 292 115 44 chr11 148578123 148578480 -204992 - L2 LINE L2 -125 3188 2734 26 0 0 0 chr11 148578506 148578532 -204940 + AT_rich Low_complexity Low_complexity 1 26 0 28 0 0 0 chr11 148580147 148580175 -203297 + AT_rich Low_complexity Low_complexity 1 28 0 1806 137 32 0 chr11 148580222 148580506 -202966 + AluJb SINE Alu 1 293 -19 411 21 0 0 chr11 148580525 148580573 -202899 + (TG)n Simple_repeat Simple_repeat 2 49 0 240 275 58 43 chr11 148580629 148580698 -202774 - L2 LINE L2 -35 3237 3168 672 273 10 26 chr11 148581127 148581321 -202151 - L2 LINE L2 -1 3312 3122 26 0 0 0 chr11 148582881 148582907 -200565 + AT_rich Low_complexity Low_complexity 1 26 0 315 228 76 11 chr11 148583424 148583516 -199956 + MIR SINE MIR 139 236 -26 207 0 0 0 chr11 148583518 148583541 -199931 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 277 294 221 24 chr11 148583573 148584188 -199284 - L2 LINE L2 -65 3248 2493 1300 107 21 0 chr11 148585517 148585704 -197768 + L1PB3 LINE L1 5962 6152 -2 205 171 0 0 chr11 148585721 148585756 -197716 + (CA)n Simple_repeat Simple_repeat 2 36 0 512 239 164 6 chr11 148585869 148586028 -197444 - MIR SINE MIR -15 247 64 1452 334 73 30 chr11 148587090 148588474 -194998 - L2 LINE L2 -1 3312 1859 258 324 0 11 chr11 148590437 148590528 -192944 + MIR SINE MIR 37 125 -102 345 179 162 17 chr11 148590566 148590683 -192789 + L2 LINE L2 3121 3254 -18 363 265 111 37 chr11 148591254 148591416 -192056 - MLT1J2 LTR MaLR 0 450 277 1914 155 0 0 chr11 148591720 148592016 -191456 + AluSx SINE Alu 1 296 -16 288 246 58 0 chr11 148592457 148592526 -190946 + MER5A DNA MER1_type 115 187 -2 581 381 91 19 chr11 148595722 148596236 -187236 - L1MC4a LINE L1 -1880 5928 5378 242 251 126 71 chr11 148596404 148596587 -186885 + L2 LINE L2 3079 3271 -1 310 343 10 0 chr11 148596895 148596994 -186478 + MIR SINE MIR 162 261 -1 2394 73 0 13 chr11 148597135 148597450 -186022 + AluY SINE Alu 1 311 0 527 254 92 87 chr11 148597661 148597879 -185593 + L2 LINE L2 2925 3147 -166 2329 176 14 40 chr11 148597879 148598379 -185093 - L1MB1 LINE L1 -1 6167 5681 527 254 92 87 chr11 148598379 148598506 -184966 + L2 LINE L2 3147 3272 -41 353 271 121 7 chr11 148599667 148599807 -183665 + MIR SINE MIR 107 262 0 1980 102 0 0 chr11 148600633 148600899 -182573 + AluSg SINE Alu 37 302 -8 185 192 0 39 chr11 148601454 148601506 -181966 + (CATATA)n Simple_repeat Simple_repeat 6 55 0 23 0 0 0 chr11 148602557 148602580 -180892 + AT_rich Low_complexity Low_complexity 1 23 0 908 285 97 34 chr11 148603706 148604376 -179096 - L1ME4a LINE L1 -27 6094 5383 205 350 126 7 chr11 148606050 148606193 -177279 - MIR SINE MIR -62 200 41 23 0 0 0 chr11 148606933 148606956 -176516 + AT_rich Low_complexity Low_complexity 1 23 0 1901 252 16 9 chr11 148607962 148608398 -175074 - LTR40a LTR ERVL -2 517 79 1631 155 0 29 chr11 148608400 148608678 -174794 + AluJo SINE Alu 1 270 -42 971 274 62 8 chr11 148608705 148609091 -174381 - HERVL40 LTR ERVL -31 5499 2692 429 355 15 15 chr11 148608875 148609143 -174329 - MER89-int LTR ERV1 -290 6511 6244 * 2929 281 36 16 chr11 148609649 148610609 -172863 - HERVL40 LTR ERVL -667 4617 2052 1819 271 28 20 chr11 148610608 148611117 -172355 - HERVL40 LTR ERVL -1676 3854 3342 * 531 293 62 46 chr11 148611149 148611372 -172100 - HERVL40 LTR ERVL -4212 1318 1040 1513 223 39 11 chr11 148611372 148611727 -171745 + MLT1A1 LTR MaLR 1 365 0 531 293 62 46 chr11 148611727 148611835 -171637 - HERVL40 LTR ERVL -4490 1040 935 387 315 101 15 chr11 148611875 148612142 -171330 - HERVL40 LTR ERVL -5240 290 1 1511 241 55 35 chr11 148612144 148612604 -170868 - LTR40a LTR ERVL 0 462 6 238 312 52 13 chr11 148612709 148612786 -170686 - L2 LINE L2 -37 3235 3156 549 259 45 33 chr11 148612799 148613006 -170466 - MIR SINE MIR 0 262 16 295 306 45 30 chr11 148613146 148613280 -170192 - L2 LINE L2 -216 3056 2921 41 48 0 0 chr11 148614537 148614599 -168873 + AT_rich Low_complexity Low_complexity 1 62 0 201 329 76 0 chr11 148614639 148614718 -168754 - MIR SINE MIR -62 146 62 334 295 49 25 chr11 148615257 148615379 -168093 - MIR3 SINE MIR -69 139 15 301 132 52 0 chr11 148617160 148617226 -166246 - MLT1E2 LTR MaLR 0 626 557 7613 56 4 7 chr11 148617467 148618428 -165044 - L1P LINE L1 -5186 960 3 742 285 40 10 chr11 148618945 148619145 -164327 - MER58A DNA MER1_type 0 224 19 2134 162 70 15 chr11 148620025 148620427 -163045 - MSTB LTR MaLR -2 424 1 2907 227 92 4 chr11 148620427 148621111 -162361 - MSTB-int LTR MaLR 0 1651 908 225 278 40 17 chr11 148621422 148621598 -161874 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 195 255 163 10 chr11 148622502 148622600 -160872 + MIR SINE MIR 99 211 -51 214 243 0 0 chr11 148623264 148623313 -160159 - MIR SINE MIR -63 145 99 201 400 40 0 chr11 148623404 148623479 -159993 + L2 LINE L2 3107 3184 -88 651 197 7 14 chr11 148623483 148623630 -159842 - L1MD3 LINE L1 -1 7994 7849 679 192 0 25 chr11 148623732 148623852 -159620 - FLAM_C SINE Alu -16 117 1 425 252 93 56 chr11 148624388 148624658 -158814 - L1ME LINE L1 -319 5802 5523 182 303 121 30 chr11 148626068 148626233 -157239 - L2 LINE L2 -38 3275 3096 2057 102 7 0 chr11 148626912 148627196 -156276 - AluSx SINE Alu -20 292 7 694 286 67 35 chr11 148627225 148627568 -155904 - L1MA9 LINE L1 -38 6274 5921 587 121 0 0 chr11 148627579 148627662 -155810 - AluJ/FRAM SINE Alu -14 298 216 224 359 0 0 chr11 148630722 148630786 -152686 - MIR3 SINE MIR -21 187 124 463 323 7 0 chr11 148631357 148631512 -151960 - ERVL LTR ERVL -1832 3932 3777 381 149 7 71 chr11 148631778 148632229 -151243 + (TGAG)n Simple_repeat Simple_repeat 1 422 0 342 313 36 0 chr11 148632335 148632501 -150971 - ERVL LTR ERVL -2342 3312 3141 484 204 45 8 chr11 148634727 148634859 -148613 + MLT1G LTR MaLR 412 548 -42 721 301 102 55 chr11 148635701 148636478 -146994 + L1MEd LINE L1 275 1087 -5032 270 231 19 51 chr11 148638233 148638389 -145083 + (CACCC)n Simple_repeat Simple_repeat 2 152 0 219 103 15 59 chr11 148638391 148638459 -145013 + (CCCCCA)n Simple_repeat Simple_repeat 6 70 0 2195 110 0 7 chr11 148638877 148639167 -144305 + AluSx SINE Alu 1 288 -24 36 0 0 0 chr11 148639178 148639214 -144258 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr11 148641053 148641074 -142398 + AT_rich Low_complexity Low_complexity 1 21 0 255 136 8 64 chr11 148641507 148641632 -141840 + A-rich Low_complexity Low_complexity 3 120 0 261 211 11 21 chr11 148641649 148641744 -141728 + (CAAA)n Simple_repeat Simple_repeat 3 96 0 744 281 101 15 chr11 148642655 148642983 -140489 + MLT1B LTR MaLR 20 375 -15 239 360 0 0 chr11 148643396 148643482 -139990 + L3 LINE CR1 633 718 -859 1591 271 56 16 chr11 148644160 148645246 -138226 + L1ME2 LINE L1 4820 5951 -213 260 239 12 49 chr11 148645322 148645485 -137987 + A-rich Low_complexity Low_complexity 3 159 0 212 182 30 53 chr11 148645468 148645600 -137872 + (CACAA)n Simple_repeat Simple_repeat 4 132 0 * 1168 170 58 23 chr11 148647318 148647330 -136142 + Tigger7 DNA MER2_type 2204 2214 -273 2331 99 3 0 chr11 148647330 148647624 -135848 + AluSx SINE Alu 1 295 -17 1168 170 58 23 chr11 148647624 148647870 -135602 + Tigger7 DNA MER2_type 2214 2471 -16 201 333 50 8 chr11 148649011 148649131 -134341 + MIR SINE MIR 106 230 -32 240 158 0 0 chr11 148649391 148649429 -134043 - MIR SINE MIR -60 148 111 557 204 22 22 chr11 148650751 148650888 -132584 - MSTB LTR MaLR -289 137 1 1692 31 0 0 chr11 148651016 148651241 -132231 + L1PA4 LINE L1 5942 6166 0 1283 266 151 39 chr11 148652288 148653362 -130110 - L2 LINE L2 0 3313 2142 1575 193 24 0 chr11 148655887 148656182 -127290 - AluJb SINE Alu -10 302 1 572 289 102 51 chr11 148657016 148657528 -125944 - L1M4 LINE L1 -382 5796 5259 373 267 38 9 chr11 148657641 148657746 -125726 + MIR SINE MIR 9 116 -146 1275 157 0 42 chr11 148657781 148657837 -125635 + AluJo SINE Alu 86 143 -169 2336 73 13 10 chr11 148657837 148658137 -125335 + AluY SINE Alu 1 301 -10 1275 157 0 42 chr11 148658137 148658288 -125184 + AluJo SINE Alu 143 286 -26 213 65 0 0 chr11 148658288 148658319 -125153 + (CATA)n Simple_repeat Simple_repeat 2 32 0 229 282 14 0 chr11 148658329 148658400 -125072 + MIR SINE MIR 156 227 -35 217 200 22 0 chr11 148658403 148658448 -125024 + (TA)n Simple_repeat Simple_repeat 2 47 0 217 250 29 0 chr11 148659014 148659082 -124390 + (CAAA)n Simple_repeat Simple_repeat 2 71 0 2143 119 10 0 chr11 148659611 148659914 -123558 + AluSx SINE Alu 1 306 -6 2253 179 37 2 chr11 148659944 148660353 -123119 + Tigger2a DNA MER2_type 12 434 0 207 0 0 0 chr11 148660359 148660382 -123090 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 589 313 62 0 chr11 148660678 148660873 -122599 + MIR SINE MIR 23 229 -33 2220 107 3 0 chr11 148661259 148661549 -121923 - AluSc SINE Alu -18 291 1 753 85 0 0 chr11 148662153 148662259 -121213 + (TTCC)n Simple_repeat Simple_repeat 2 107 0 242 328 41 25 chr11 148665041 148665163 -118309 - MIR3 SINE MIR -49 159 36 269 346 90 13 chr11 148666710 148666866 -116606 - L2 LINE L2 0 3272 3105 2213 123 0 3 chr11 148667800 148668110 -115362 + AluSx SINE Alu 1 309 -3 2241 120 0 0 chr11 148669446 148669747 -113725 - AluSx SINE Alu -11 301 1 931 278 61 37 chr11 148669788 148670166 -113306 - MLT1J1 LTR MaLR -59 387 1 23 0 0 0 chr11 148670839 148670862 -112610 + AT_rich Low_complexity Low_complexity 1 23 0 541 325 55 35 chr11 148671470 148671904 -111568 - MLT1J1 LTR MaLR -3 443 1 226 323 54 11 chr11 148671905 148671998 -111474 + MIR SINE MIR 156 252 -10 639 289 36 25 chr11 148672621 148672898 -110574 + L2 LINE L2 3029 3308 -5 397 291 43 8 chr11 148673178 148673295 -110177 - MIR SINE MIR -118 144 24 533 55 14 0 chr11 148673432 148673505 -109967 + (CTATT)n Simple_repeat Simple_repeat 2 75 0 240 351 0 0 chr11 148673901 148673978 -109494 - L2 LINE L2 -2 3270 3194 1893 197 28 3 chr11 148674017 148674373 -109099 - MLT1A1 LTR MaLR 0 365 1 521 294 64 49 chr11 148675683 148676071 -107401 - MLT1I LTR MaLR 0 409 16 239 143 0 18 chr11 148676559 148676615 -106857 + (TG)n Simple_repeat Simple_repeat 2 56 0 187 54 54 0 chr11 148677272 148677309 -106163 + T-rich Low_complexity Low_complexity 2 40 0 257 341 98 0 chr11 148677508 148677631 -105841 - L2 LINE L2 -2 3270 3136 2023 180 42 42 chr11 148678105 148678539 -104933 + Tigger2a DNA MER2_type 1 434 0 280 276 35 65 chr11 148679012 148679182 -104290 - MER5B DNA MER1_type -18 171 1 245 326 159 41 chr11 148679259 148679798 -103674 - L2 LINE L2 -642 2672 2027 2192 121 0 7 chr11 148679798 148680103 -103369 + AluSq SINE Alu 9 311 -2 245 326 159 41 chr11 148680103 148680275 -103197 - L2 LINE L2 -1287 2027 1877 253 325 81 0 chr11 148680786 148680909 -102563 + L2 LINE L2 2228 2360 -954 2506 186 15 7 chr11 148681722 148682179 -101293 - LOR1b LTR ERV1 0 461 1 224 329 68 31 chr11 148682183 148682344 -101128 - L2 LINE L2 -519 2795 2629 431 262 98 0 chr11 148682604 148682786 -100686 - MIR SINE MIR -58 204 1 219 214 18 18 chr11 148683702 148683758 -99714 + T-rich Low_complexity Low_complexity 4 59 0 204 250 39 0 chr11 148683995 148684047 -99425 + C-rich Low_complexity Low_complexity 4 57 0 272 367 92 8 chr11 148686750 148686870 -96602 - L2 LINE L2 -1 3271 3142 186 310 35 35 chr11 148686984 148687071 -96401 - L2 LINE L2 -284 2988 2902 2022 168 112 28 chr11 148687432 148687825 -95647 - MSTB LTR MaLR 0 426 1 300 120 0 0 chr11 148687827 148687877 -95595 + (CA)n Simple_repeat Simple_repeat 1 50 0 189 342 13 25 chr11 148688230 148688309 -95163 - L2 LINE L2 -527 2787 2710 419 263 206 6 chr11 148688784 148688959 -94513 + MIR SINE MIR 45 254 -8 445 165 241 23 chr11 148689254 148689316 -94156 - MER5A DNA MER1_type -21 168 121 1702 185 20 0 chr11 148689316 148689614 -93858 - AluJo SINE Alu -8 304 1 445 165 241 23 chr11 148689614 148689684 -93788 - MER5A DNA MER1_type -68 121 7 390 42 0 0 chr11 148690656 148690704 -92768 + (TC)n Simple_repeat Simple_repeat 1 48 0 344 59 20 0 chr11 148690703 148690754 -92718 + (CA)n Simple_repeat Simple_repeat 1 52 0 * 183 280 47 75 chr11 148691183 148691290 -92182 + MER5B DNA MER1_type 19 122 -56 207 174 87 22 chr11 148691388 148691434 -92038 + MIR SINE MIR 89 137 -71 * 208 291 134 45 chr11 148691429 148691563 -91909 + L2 LINE L2 3125 3270 -2 230 185 19 0 chr11 148691564 148691618 -91854 + (TGAA)n Simple_repeat Simple_repeat 1 55 0 634 271 107 60 chr11 148692925 148693272 -90200 + MLT1I LTR MaLR 47 409 0 279 215 0 0 chr11 148694881 148694946 -88526 + T-rich Low_complexity Low_complexity 1 65 0 565 254 149 15 chr11 148697630 148697831 -85641 - MIR SINE MIR -14 248 21 180 250 71 60 chr11 148698107 148698191 -85281 + L2 LINE L2 3182 3266 -47 209 316 0 0 chr11 148698228 148698285 -85187 + GA-rich Low_complexity Low_complexity 1 57 0 330 345 176 23 chr11 148698990 148699553 -83919 - L2 LINE L2 -911 2403 1755 306 234 0 0 chr11 148699732 148699809 -83663 - L1MB8 LINE L1 -1 6177 6101 5515 150 29 25 chr11 148699812 148700902 -82570 - L1MA4A LINE L1 -5 6298 5212 7508 172 27 6 chr11 148701053 148701944 -81528 - L1 LINE L1 -837 5309 4375 387 0 0 0 chr11 148701944 148701987 -81485 + (TTTTA)n Simple_repeat Simple_repeat 5 47 0 7508 172 27 6 chr11 148701987 148702551 -80921 - L1 LINE L1 -1771 4375 3824 3852 249 70 47 chr11 148702542 148705664 -77808 - L1MB7 LINE L1 -62 6620 3454 * 1143 221 49 113 chr11 148705643 148706150 -77322 - L1MB7 LINE L1 -3490 3154 2747 * 2555 166 29 16 chr11 148706150 148706602 -76870 - L1PA16 LINE L1 -3 6163 5706 1143 221 49 113 chr11 148706602 148706896 -76576 - L1MB7 LINE L1 -3897 2747 2436 1707 259 75 31 chr11 148706917 148707941 -75531 - L1MB7 LINE L1 -4713 1933 885 312 295 16 16 chr11 148708488 148708617 -74855 - L1MB7 LINE L1 -6337 205 77 423 147 0 0 chr11 148710014 148710116 -73356 + (TTG)n Simple_repeat Simple_repeat 1 102 0 2236 92 3 10 chr11 148710123 148710428 -73044 - AluSc SINE Alu -5 304 2 976 223 18 2 chr11 148710630 148710916 -72556 + MER2 DNA MER2_type 8 340 -5 295 265 123 85 chr11 148711204 148711629 -71843 - MLT1I LTR MaLR -7 426 1 736 223 80 6 chr11 148711731 148711906 -71566 + MER5A DNA MER1_type 2 189 0 415 258 8 33 chr11 148711914 148712034 -71438 - MER5B DNA MER1_type 0 178 62 422 313 141 1 chr11 148712230 148712443 -71029 + MIR SINE MIR 18 261 -1 3928 196 57 40 chr11 148713657 148715376 -68096 - L1MCb LINE L1 -4511 2053 365 183 42 0 0 chr11 148715376 148715400 -68072 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3928 196 57 40 chr11 148715400 148715503 -67969 - L1MCb LINE L1 -6199 365 265 2260 51 34 0 chr11 148715503 148715799 -67673 - L1PA4 LINE L1 -2 6153 5848 3928 196 57 40 chr11 148715799 148715829 -67643 - L1MCb LINE L1 -6299 265 46 30 27 0 0 chr11 148716547 148716584 -66888 + AT_rich Low_complexity Low_complexity 1 37 0 664 256 100 69 chr11 148716754 148717114 -66358 - L2 LINE L2 -134 3179 2809 1451 257 85 20 chr11 148717542 148718048 -65424 - L2 LINE L2 -533 2781 2243 211 315 100 60 chr11 148718386 148718834 -64638 + L2 LINE L2 1897 2362 -952 216 293 17 0 chr11 148719207 148719265 -64207 + L2 LINE L2 3245 3303 -10 270 256 33 33 chr11 148720240 148720330 -63142 - MIR3 SINE MIR -11 197 108 248 320 19 10 chr11 148721641 148721744 -61728 + L2 LINE L2 3204 3307 -6 204 40 0 0 chr11 148721947 148721972 -61500 + (TG)n Simple_repeat Simple_repeat 1 25 0 188 253 80 27 chr11 148722845 148722920 -60552 - MIR SINE MIR -149 113 35 403 308 38 49 chr11 148723229 148723339 -60133 + MIR3 SINE MIR 25 134 -74 2318 146 75 27 chr11 148723339 148723751 -59721 + MSTB1 LTR MaLR 1 432 0 403 308 38 49 chr11 148723751 148723825 -59647 + MIR3 SINE MIR 134 207 -1 421 274 7 15 chr11 148724769 148724904 -58568 + MIR SINE MIR 88 221 -41 381 337 53 47 chr11 148725323 148725664 -57808 + L2 LINE L2 2902 3244 -69 516 134 0 24 chr11 148725711 148725793 -57679 - FLAM_A SINE Alu -4 138 59 196 327 26 26 chr11 148726081 148726194 -57278 + MIR SINE MIR 84 196 -66 1690 95 6 117 chr11 148726227 148726544 -56928 - AluSx SINE Alu -19 293 12 548 295 97 23 chr11 148727111 148727328 -56144 + MIR SINE MIR 24 256 -6 186 71 0 0 chr11 148727480 148727508 -55964 + (TG)n Simple_repeat Simple_repeat 1 28 0 339 78 0 0 chr11 148727508 148727559 -55913 + (GA)n Simple_repeat Simple_repeat 2 52 0 470 256 101 12 chr11 148728030 148728198 -55274 + MIR SINE MIR 11 193 -69 238 353 86 17 chr11 148729124 148729240 -54232 + L2 LINE L2 3134 3257 -15 1020 133 0 0 chr11 148730250 148730465 -53007 + (TG)n Simple_repeat Simple_repeat 1 215 0 2248 149 8 3 chr11 148731038 148731406 -52066 + L1P LINE L1 3374 3743 -2403 577 236 58 52 chr11 148732334 148732508 -50964 + MIR SINE MIR 79 253 -9 210 167 0 0 chr11 148732631 148732667 -50805 + A-rich Low_complexity Low_complexity 1 36 0 487 108 45 0 chr11 148733064 148733175 -50297 + (TCTA)n Simple_repeat Simple_repeat 3 118 0 316 311 145 21 chr11 148733192 148733385 -50087 - MIR SINE MIR -16 246 30 252 86 0 0 chr11 148735070 148735105 -48367 + (T)n Simple_repeat Simple_repeat 1 35 0 229 295 53 0 chr11 148736737 148736832 -46640 - L2 LINE L2 -56 3216 3117 219 296 74 0 chr11 148737371 148737452 -46020 + MIR SINE MIR 78 164 -98 740 282 79 0 chr11 148737487 148737689 -45783 - MIR SINE MIR -32 230 13 315 0 0 0 chr11 148739041 148739076 -44396 + (TG)n Simple_repeat Simple_repeat 2 36 0 461 294 30 12 chr11 148739381 148739562 -43910 - MIR SINE MIR -47 215 33 1828 177 10 0 chr11 148740206 148740506 -42966 + AluSx SINE Alu 2 304 -8 180 111 0 0 chr11 148741894 148741921 -41551 + (TG)n Simple_repeat Simple_repeat 1 27 0 360 59 0 0 chr11 148741921 148741972 -41500 + (GA)n Simple_repeat Simple_repeat 2 52 0 230 294 130 33 chr11 148742035 148742219 -41253 + MIR SINE MIR 49 250 -12 247 175 0 0 chr11 148742738 148742778 -40694 + L2 LINE L2 3182 3221 -92 204 167 0 0 chr11 148742821 148742869 -40603 + (TGAA)n Simple_repeat Simple_repeat 3 50 0 1492 269 101 9 chr11 148743126 148743573 -39899 + Tigger8 DNA MER2_type 75 562 -104 306 182 0 0 chr11 148747772 148747838 -35634 + (AATTG)n Simple_repeat Simple_repeat 3 68 0 21 36 0 0 chr11 148748119 148748147 -35325 + AT_rich Low_complexity Low_complexity 1 28 0 1554 221 52 3 chr11 148749236 148749584 -33888 - MLT1A1 LTR MaLR 0 365 1 201 147 0 0 chr11 148750387 148750421 -33051 + (GAAA)n Simple_repeat Simple_repeat 4 37 0 222 37 0 0 chr11 148750570 148750597 -32875 + (TCTA)n Simple_repeat Simple_repeat 3 29 0 1172 243 46 86 chr11 148752721 148753220 -30252 - MLT1D LTR MaLR 0 505 27 1633 164 51 34 chr11 148753229 148753521 -29951 - AluJb SINE Alu -15 297 1 1591 255 35 72 chr11 148753557 148754071 -29401 - MLT1D-int LTR MaLR 0 1371 877 2372 224 41 44 chr11 148754151 148754924 -28548 - MLT1D-int LTR MaLR -484 887 1 1488 223 20 47 chr11 148754924 148755332 -28140 - MLT2C1 LTR ERVL 0 397 1 586 155 21 0 chr11 148760900 148760997 -22475 + L1MB1 LINE L1 5700 5798 -370 1615 139 15 0 chr11 148760997 148761261 -22211 + L1MA5A LINE L1 6017 6287 -10 1733 159 78 0 chr11 148761287 148761608 -21864 + L1MB1 LINE L1 5822 6167 -1 626 249 175 0 chr11 148762464 148762653 -20819 - MER58A DNA MER1_type 0 224 3 247 276 81 63 chr11 148762698 148762872 -20600 - L2 LINE L2 -19 3294 3118 180 361 24 0 chr11 148762988 148763071 -20401 + MIR SINE MIR 110 194 -68 312 338 60 6 chr11 148763787 148763959 -19513 - MIR SINE MIR -63 145 10 623 203 0 8 chr11 148764044 148764167 -19305 - FLAM_C SINE Alu -16 127 6 293 240 27 33 chr11 148764171 148764321 -19151 - Charlie7 DNA MER1_type -37 2575 2427 188 429 0 0 chr11 148765589 148765694 -17778 + MIR SINE MIR 3 107 -155 212 335 135 5 chr11 148765772 148765957 -17515 - L3 LINE CR1 -127 1450 1242 436 316 62 19 chr11 148765986 148766242 -17230 - L3 LINE CR1 -489 1088 822 2459 52 28 0 chr11 148767721 148768009 -15463 + AluY SINE Alu 1 296 -15 500 179 0 0 chr11 148768082 148768160 -15312 + FLAM_A SINE Alu 30 107 -35 248 208 0 14 chr11 148768163 148768235 -15237 + (TA)n Simple_repeat Simple_repeat 1 71 0 966 117 39 0 chr11 148768290 148768444 -15028 - HSMAR2 DNA Mariner -1 1301 1142 2212 161 113 30 chr11 148768444 148768903 -14569 - MER61D LTR ERV1 0 501 5 11562 163 55 20 chr11 148768913 148772313 -11159 - MER61D-int LTR ERV1 0 6929 2108 2465 84 0 0 chr11 148772313 148772612 -10860 + AluY SINE Alu 1 299 -12 11562 163 55 20 chr11 148772612 148772887 -10585 - MER61D-int LTR ERV1 -4821 2108 1844 4653 177 33 40 chr11 148772884 148774336 -9136 - MER61D-int LTR ERV1 -390 4827 266 * 2372 160 111 7 chr11 148774652 148775102 -8370 - MER61D LTR ERV1 0 501 5 7051 132 28 11 chr11 148775112 148776238 -7234 - HSMAR2 DNA Mariner -157 1145 1 739 281 29 0 chr11 148776247 148776457 -7015 - MIR SINE MIR -14 248 33 1602 167 7 61 chr11 148777398 148777692 -5780 + AluSx SINE Alu 21 298 -14 1677 174 3 7 chr11 148777758 148778052 -5420 - AluJo SINE Alu -19 293 1 181 178 137 110 chr11 148778118 148778191 -5281 + L2 LINE L2 3239 3313 0 463 369 125 61 chr11 148778309 148779658 -3814 + L2 LINE L2 1528 2963 -351 196 281 0 16 chr11 148779984 148780048 -3424 - L2 LINE L2 -1 3312 3250 2485 133 25 10 chr11 148780201 148780598 -2874 - MER57A LTR ERV1 0 403 1 186 43 0 0 chr11 148781174 148781197 -2275 + (TG)n Simple_repeat Simple_repeat 1 23 0 227 246 36 55 chr11 148782204 148782314 -1158 + MLT1J2 LTR MaLR 337 444 -6 208 125 0 0 chr11 148783296 148783328 -144 + L2 LINE L2 3263 3294 -19